Sequence	Length	Modifications	Modified sequence	Carbamidomethyl (C) Probabilities	Oxidation (M) Probabilities	Carbamidomethyl (C) Score Diffs	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Carbamidomethyl (C)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	MS/MS scan numbers	MS3 scan numbers	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Carbamidomethyl (C) site IDs	Oxidation (M) site IDs	Taxonomy IDs	Taxonomy names	Mass deficit
AAAAPGPCR	9	Unmodified	_AAAAPGPCR_					0	0	0		ENST00000405692.2_3_7:558637-559858:-|nuORF	ENST00000405692.2_3_7:558637-559858:-|nuORF	ENST00000405692.2_3_7:558637-559858:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.203857421875	2	407.20543	812.396307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.52	1	26.52	26.02	27.02	0								0	0	0	0.28631	1	3283	3283		1.8442	1.1539	1				0	6376	0	0	0	0					-0.017395530114754365
AAAEHPAQV	9	Unmodified	_AAAEHPAQV_					0	0	0		ALMS1|p.S3415P|1|0.56|ENSG00000116127|chr2:73559001-73559001|T/C|missense_variant	ALMS1|p.S3415P|1|0.56|ENSG00000116127|chr2:73559001-73559001|T/C|missense_variant	ALMS1|p.S3415P|1|0.56|ENSG00000116127|chr2:73559001-73559001|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	447.73699951171875	2	447.227417	892.44028	-0.017152	-7.6707E-06	-1.9929	-0.00089128	-2.0101	-0.00089895	447.22647697120055	27.961	0.36366	27.961	27.831	28.194	0					42	19	3	0	0	0	0.25051	1	3754	3754		7.9102	0	1	31209			1	24	1	1	1	1					-0.010242453134765128
AAAEHPAQV	9	Unmodified	_AAAEHPAQV_					0	0	0		ALMS1|p.S3415P|1|0.56|ENSG00000116127|chr2:73559001-73559001|T/C|missense_variant	ALMS1|p.S3415P|1|0.56|ENSG00000116127|chr2:73559001-73559001|T/C|missense_variant	ALMS1|p.S3415P|1|0.56|ENSG00000116127|chr2:73559001-73559001|T/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	447.227417	892.44028	-0.23713	-0.00010605	-1.5572	-0.00069644	-1.7944	-0.00080249	447.226804440306	27.815	0.27057	27.897	27.798	28.069	0.082134	-0.032268	0.0001426	NaN	7.2892	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25033			2	24	1	1							-0.010242453134765128
AAAELEPAL	9	Unmodified	_AAAELEPAL_					0	0	0		nc|ENSG00000168807|Q13425-2|SNTB2;ENSG00000168807|ENST00000336278|SNTB2	nc|ENSG00000168807|Q13425-2|SNTB2	nc|ENSG00000168807|Q13425-2|SNTB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.2338562011719	2	442.739825	883.465098	0.44361	0.0001964	-0.29669	-0.00013135	0.14693	6.505E-05	442.73960761971585	58.012	0.39185	58.012	57.799	58.191	0					23	13	2	0	0	0	0.21603	1	12727	12727		20.454	5.6154	1	141680			3	4308	2	2	2	2					0.018703897692262217
AAAELEPAL	9	Unmodified	_AAAELEPAL_					0	0	0		nc|ENSG00000168807|Q13425-2|SNTB2;ENSG00000168807|ENST00000336278|SNTB2	nc|ENSG00000168807|Q13425-2|SNTB2	nc|ENSG00000168807|Q13425-2|SNTB2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	442.739825	883.465098	0.16535	7.3207E-05	-0.198	-8.7664E-05	-0.032655	-1.4458E-05	442.7398117718276	57.869	0.28276	57.937	57.851	58.134	0.068375	-0.037573	2.7458E-05	NaN	20.454	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87104			4	4308	2	2							0.018703897692262217
AACWNGSFL	9	Unmodified	_AACWNGSFL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7183532714844	2	484.71837	967.422187	-0.059614	-2.8896E-05	0.39122	0.00018963	0.33161	0.00016074	484.71833808837636	89.366	0.97137	89.399	88.823	89.794	0.032257					42	37	2	0	0	0	0.33704	1	22093	22093		1.8442	0	1	72089			5	2923	3	3	3	3					-0.06282703559827496
AACWNGSFL	9	Unmodified	_AACWNGSFL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	484.71837	967.422187	-0.059614	-2.8896E-05	0.39122	0.00018963	0.33161	0.00016074	484.71833808837636	89.366	0.97137	89.399	88.823	89.794	0.032257	0.15611	-4.3615E-05	NaN	1.8442	42	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72089			6	2923	3	3							-0.06282703559827496
AADDTEISF	9	Unmodified	_AADDTEISF_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7135314941406	2	484.714005	967.413456	-0.25351	-0.00012288	-0.78147	-0.00037879	-1.035	-0.00050167	484.7137562554165	59.087	0.5619	59.087	58.846	59.408	0					34	20	2	0	0	0	0.028398	1	13057	13057		52.268	12.311	1	211340			7	2786	4	4	4	4					-0.07155398715315187
AADDTEISF	9	Unmodified	_AADDTEISF_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.21417236328125	2	484.714005	967.413456	-0.070704	-3.4271E-05	-0.94633	-0.0004587	-1.017	-0.00049297	484.71364229617444	58.991	0.49136	59.061	58.863	59.355	0.070477					28	19	2	0	0	0	0.037705	1	12913	12913		46.021	6.0636	1	294320			8	2786	4	4	5	5					-0.07155398715315187
AAEVKGRRSRS	11	Unmodified	_AAEVKGRRSRS_					0	0	0			REV__KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant	REV__KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.8469848632812	2	608.847084	1215.67962	0.52572	0.00032008	0.56583	0.00034451	1.0916	0.00066459	608.8471988019393	88.125	1.03	88.155	87.458	88.488	0.030037					77	37	3	0	0	0	0.40904	1	21810	21810		4.897	3.9347	1	496890	+		9	11128	5	5	6	6					0.08040329637719879
AAEVKHLL	8	Unmodified	_AAEVKHLL_					0	0	0		ENST00000381279.3_1_6:139981105-139981588:+|nuORF	ENST00000381279.3_1_6:139981105-139981588:+|nuORF	ENST00000381279.3_1_6:139981105-139981588:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7661437988281	2	440.766178	879.517802	0.4635	0.0002043	-0.19364	-8.5352E-05	0.26986	0.00011894	440.76596497349374	47.946	0.9325	47.946	47.612	48.544	0					70	31	3	0	0	0	0.4772	1	9635	9635		15.847	2.3393	1	512480			10	6295	6	6	7	7					0.07322392622711504
AAEVKHLL	8	Unmodified	_AAEVKHLL_					0	0	0		ENST00000381279.3_1_6:139981105-139981588:+|nuORF	ENST00000381279.3_1_6:139981105-139981588:+|nuORF	ENST00000381279.3_1_6:139981105-139981588:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7663879394531	2	440.766178	879.517802	0.40671	0.00017927	-0.17122	-7.5468E-05	0.23549	0.0001038	440.76600216068647	47.807	0.80581	47.887	47.636	48.442	0.080032					76	29	4	0	0	0	0.4772	1	9478	9478		15.847	2.3393	1	390260			11	6295	6	6	8	8					0.07322392622711504
AAFDPEGH	8	Unmodified	_AAFDPEGH_					0	0	0		nc|ENSG00000134769|Q9Y4J8-12|DTNA;nc|ENSG00000134769|Q9Y4J8-9|DTNA;nc|ENSG00000134769|Q9Y4J8-7|DTNA;nc|ENSG00000134769|Q9Y4J8-16|DTNA;nc|ENSG00000134769|Q9Y4J8-5|DTNA;nc|ENSG00000134769|Q9Y4J8-4|DTNA;nc|ENSG00000134769|Q9Y4J8-3|DTNA;nc|ENSG00000134769|Q9Y4J8-13|DTNA;nc|ENSG00000134769|Q9Y4J8-2|DTNA;nc|ENSG00000134769|Q9Y4J8-14|DTNA;nc|ENSG00000134769|Q9Y4J8-15|DTNA;nc|ENSG00000134769|Q9Y4J8|DTNA;ENSG00000134769|ENST00000444659|DTNA	nc|ENSG00000134769|Q9Y4J8-12|DTNA	nc|ENSG00000134769|Q9Y4J8-12|DTNA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1990966796875	2	422.185217	842.355882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.8	1	74.8	74.3	75.3	0								0	0	0	0.38822	1	17872	17872		2.3027	1.5091	1				12	2688	7	7	9	9					-0.0716019613022354
AAFGIFFF	8	Unmodified	_AAFGIFFF_					0	0	0			REV__ENSG00000131055|ENST00000376075|COX4I2	REV__ENSG00000131055|ENST00000376075|COX4I2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	460.74212646484375	2	460.239264	918.463976	0.44283	0.00020381	0.59699	0.00027476	1.0398	0.00047857	460.2388116966301	81.028	0.79834	81.051	80.652	81.451	0.023605					70	27	4	0	0	0	0.53257	1	19656	19656		6.3541	0.59368	1	563890	+		13	9077	8	8	10	10					0.001482201909880132
AAGFDEDMVIQ	11	Unmodified	_AAGFDEDMVIQ_					0	0	0		ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF	ENSG00000131023|ENST00000543571|LATS1	ENSG00000131023|ENST00000543571|LATS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.268798828125	2	598.268621	1194.52269	0.72906	0.00043618	-0.37505	-0.00022438	0.35402	0.0002118	598.2685029727933	66.282	0.39505	66.282	66.137	66.532	0					25	14	2	0	0	0	0.35693	1	15309	15309		11.495	0	1	79266			14	2510	9	9	11	11					-0.06679136087495863
AAGKPVKKK	9	Unmodified	_AAGKPVKKK_					0	0	0		tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	463.3089294433594	2	463.810919	925.607286	0.010011	4.6431E-06	-2.3438	-0.0010871	-2.3338	-0.0010824	463.809703768513	112.08	0.42214	112.08	112.01	112.43	0					75	47	2	0	0	0	0.25579	1	28689	28689		4.3292	1.7518	1	970350			15	13550	10	10	12	12					0.14150647302085417
AAGLYLLLGGF	11	Unmodified	_AAGLYLLLGGF_					0	0	0		ENST00000552176.2_17:6916945-6917602:+|nuORF;ENSG00000219200|ENST00000593646|RNASEK;nc|ENSG00000219200|Q6P5S7-2|RNASEK;nc|ENSG00000219200|Q6P5S7|RNASEK	ENST00000552176.2_17:6916945-6917602:+|nuORF	ENST00000552176.2_17:6916945-6917602:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8156127929688	2	547.815867	1093.61718	0.28465	0.00015594	0.15651	8.5736E-05	0.44116	0.00024167	547.8159038770043	102.87	0.67492	102.87	102.69	103.37	0					108	47	4	0	0	0	0.31901	1	26385	26385		15.847	1.9411	1	619340			16	5586	11	11	13	13					0.07411790516812289
AAGLYLLLGGF	11	Unmodified	_AAGLYLLLGGF_					0	0	0		ENST00000552176.2_17:6916945-6917602:+|nuORF;ENSG00000219200|ENST00000593646|RNASEK;nc|ENSG00000219200|Q6P5S7-2|RNASEK;nc|ENSG00000219200|Q6P5S7|RNASEK	ENST00000552176.2_17:6916945-6917602:+|nuORF	ENST00000552176.2_17:6916945-6917602:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.8159790039062	2	547.815867	1093.61718	0.46208	0.00025313	0.060612	3.3204E-05	0.52269	0.00028634	547.815808286614	102.8	0.62079	102.85	102.67	103.29	0.040916					116	53	3	0	0	0	0.36277	1	26315	26315		10.824	0.75	1	641460			17	5586	11	11	14	14					0.07411790516812289
AAGTVVWAAF	10	Unmodified	_AAGTVVWAAF_					0	0	0			REV__ENST00000321147.10_1_15:65808125-65809990:-|nuORF	REV__ENST00000321147.10_1_15:65808125-65809990:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.76153564453125	2	496.763635	991.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.308	1	42.398	41.898	42.898	0.089764								0	0	0	0.2369	1	7862	7862		25.399	2.663	1		+		18	11341	12	12	15	15					0.01662088760087954
AAGVGDMVM	9	2 Oxidation (M)	_AAGVGDM(Oxidation (M))VM(Oxidation (M))_		AAGVGDM(1)VM(1)		AAGVGDM(97)VM(97)	0	0	2		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.6885986328125	2	441.688421	881.362289	0.020917	9.239E-06	0.53179	0.00023489	0.55271	0.00024413	441.6885281619132	31.023	1.8828	31.023	30.665	32.548	0					133	84	3	0	0	0	0.0043406	3	4592	4552;4592;4636		97.075	57.117	1	196350			19	2304	13	13	16;17;18	17		146;147			-0.08313762285376924
AAGVGDMVM	9	2 Oxidation (M)	_AAGVGDM(Oxidation (M))VM(Oxidation (M))_		AAGVGDM(1)VM(1)		AAGVGDM(97)VM(97)	0	0	2		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.6884765625	2	441.688421	881.362289	0.11566	5.1087E-05	-0.74641	-0.00032968	-0.63075	-0.00027859	441.68842125444587	33.76	2.6401	33.76	32.564	35.205	0					200	104	4	0	0	0	0.0043406	5	5366	5315;5366;5415;5454;5509		97.075	62.972	1	160440			20	2304	13	13	19;20;21;22;23	20		146;147			-0.08313762285376924
AAGVGDMVM	9	2 Oxidation (M)	_AAGVGDM(Oxidation (M))VM(Oxidation (M))_		AAGVGDM(1)VM(1)		AAGVGDM(97)VM(97)	0	0	2		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.6885986328125	2	441.688421	881.362289	-0.20132	-8.8919E-05	-0.2564	-0.00011325	-0.45772	-0.00020217	441.6886271267047	30.956	1.3654	31.03	30.635	32	0.073782					172	70	4	0	0	0	0.0043406	3	4492	4394;4450;4492		97.075	57.117	1	188580			21	2304	13	13	24;25;26	26		146;147			-0.08313762285376924
AAGVGDMVM	9	2 Oxidation (M)	_AAGVGDM(Oxidation (M))VM(Oxidation (M))_		AAGVGDM(1)VM(1)		AAGVGDM(97)VM(97)	0	0	2		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.6885986328125	2	441.688421	881.362289	-0.10335	-4.5648E-05	0.52002	0.00022969	0.41667	0.00018404	441.6885400727729	33.628	2.6597	33.703	32.535	35.194	0.074322					172	116	2	0	0	0	0.0043406	4	5242	5195;5242;5285;5329		97.075	57.117	1	136000			22	2304	13	13	27;28;29;30	28		146;147			-0.08313762285376924
AAHEEDLQ	8	Unmodified	_AAHEEDLQ_					0	0	0		nc|ENSG00000058453|Q5TZA2-2|CROCC;CROCC|p.L1854Rfs*2|1|0.12|ENSG00000058453|chr1:16970362-16970375|TGGCTCAGCTGGAA/-|frameshift_variant;ENSG00000058453|ENST00000375541|CROCC;ENST00000477773.1_1_1:17274966-17277650:+|nuORF	nc|ENSG00000058453|Q5TZA2-2|CROCC	nc|ENSG00000058453|Q5TZA2-2|CROCC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.88726806640625	2	456.706514	911.398475	0.13107	5.9863E-05	0.90875	0.00041503	1.0398	0.0004749	456.70628096943926	34.316	0.50352	34.316	34.091	34.595	0					38	19	3	0	0	0	0.3576	1	5514	5514		2.3027	0.24298	1	56156			23	247	14	14	31	31					-0.060768457926542396
AAHLGYSVVAI	11	Unmodified	_AAHLGYSVVAI_					0	0	0		ENST00000487998.5_1_10:92631743-92654759:+|nuORF;ENSG00000148688|ENST00000371703|RPP30;nc|ENSG00000148688|P78346-2|RPP30	ENST00000487998.5_1_10:92631743-92654759:+|nuORF	ENST00000487998.5_1_10:92631743-92654759:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2083129882812	2	550.808574	1099.60259	0.11806	6.503E-05	-0.77828	-0.00042868	-0.66022	-0.00036365	551.3094230634348	43.556	0.28603	43.645	43.481	43.767	0.088924					13	10	2	0	0	0	0.3105	1	8252	8252		5.7319	0	1	36626			24	3373	15	15	32	32					0.05677718368656315
AALALRPM	8	Unmodified	_AALALRPM_					0	0	0			REV__ENSG00000198535|ENST00000355522|C2CD4A	REV__ENSG00000198535|ENST00000355522|C2CD4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.7513427734375	2	421.749473	841.484393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.758	1	72.758	72.258	73.258	0								0	0	0	0.38822	1	17247	17247		2.5775	0.27475	1		+		25	10900	16	16	33	33					0.05731067579142746
AALPLLRDRR	10	Unmodified	_AALPLLRDRR_					0	0	0		ENST00000495794.5_1_5:864585-881375:-|nuORF	ENST00000495794.5_1_5:864585-881375:-|nuORF	ENST00000495794.5_1_5:864585-881375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8671264648438	2	590.867289	1179.72002	0.63021	0.00037237	-0.82814	-0.00048932	-0.19793	-0.00011695	590.8665320429792	98.447	0.6311	98.447	98.155	98.786	0					69	33	3	0	0	0	0.46746	2	25025	25025;25109		1.4819	0	1	353180			26	6835	17	17	34;35	34					0.13735296028107769
AALPLLRDRR	10	Unmodified	_AALPLLRDRR_					0	0	0		ENST00000495794.5_1_5:864585-881375:-|nuORF	ENST00000495794.5_1_5:864585-881375:-|nuORF	ENST00000495794.5_1_5:864585-881375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8671875	2	590.867289	1179.72002	0.66003	0.00038999	-0.83836	-0.00049536	-0.17833	-0.00010537	590.8665500665563	98.344	0.57869	98.385	98.145	98.724	0.041939					72	30	3	0	0	0	0.46746	1	24953	24953		1.4819	0	1	417380			27	6835	17	17	36	36					0.13735296028107769
AALVPFVEQF	10	Unmodified	_AALVPFVEQF_					0	0	0			REV__nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	REV__nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8057861328125	2	560.8055	1119.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.318	1	94.318	93.818	94.818	0								0	0	0	0.30402	1	23817	23817		17.113	0	1		+		28	12841	18	18	37	37					0.04143200137150416
AAPAASIMVA	10	Unmodified	_AAPAASIMVA_					0	0	0		ENSG00000129951|ENST00000520876|PLPPR3;nc|ENSG00000129951|Q6T4P5-2|PLPPR3;nc|ENSG00000129951|Q6T4P5-3|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.2441101074219	2	451.244221	900.473888	0.043239	1.9511E-05	-0.36228	-0.00016348	-0.31904	-0.00014396	451.24399559793375	39.906	0.43066	39.906	39.692	40.123	0					24	14	2	0	0	0	0.46554	1	7271	7271		1.8442	0	1	54027			29	2443	19	19	38	38					0.019670401340704302
AAPPALTPLTF	11	Unmodified	_AAPPALTPLTF_					0	0	0		ENST00000272462.2_1_2:110841994-110842294:-|nuORF	ENST00000272462.2_1_2:110841994-110842294:-|nuORF	ENST00000272462.2_1_2:110841994-110842294:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8156127929688	2	549.813325	1097.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.6	1	104.6	104.1	105.1	0								0	0	0	0.32054	1	26922	26922		7.609	0.88579	1				30	5916	20	20	39	39					0.06719486654151297
AARRFVGP	8	Unmodified	_AARRFVGP_					0	0	0		ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5536804199219	2	437.256311	872.49807	-0.16395	-7.1686E-05	-2.1158	-0.00092514	-2.2797	-0.00099682	437.2552380573185	40.106	0.24463	40.195	40.039	40.284	0.088562					12	9	2	0	0	0	0.3576	1	7168	7168		2.8892	0.31174	1	15437			31	5645	21	21	40	40					0.05672061402606232
AARRFVGP	8	Unmodified	_AARRFVGP_					0	0	0		ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	437.256311	872.49807	-0.022571	-9.8694E-06	-2.7755	-0.0012136	-2.7981	-0.0012235	437.25514494012515	40.218	0.3661	40.218	40.042	40.408	0	0.011603	-0.00033863	NaN	2.8892	13	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20584			32	5645	21	21							0.05672061402606232
AATDEERLI	9	Unmodified	_AATDEERLI_					0	0	0		ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-3|ARHGAP32;ENST00000533509.1_1_11:128855854-128936700:-|nuORF	ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.262451171875	2	509.264196	1016.51384	0.23777	0.00012109	-1.1828	-0.00060233	-0.94499	-0.00048125	509.2634341654627	36.958	0.54752	37.04	36.87	37.418	0.081715					38	20	3	0	0	0	0.12214	1	6244	6244		27.629	1.3607	1	117750			33	48	22	22	41	41					0.006242583383254896
AATEQEISL	9	Unmodified	_AATEQEISL_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2454833984375	2	481.245472	960.476391	-0.080175	-3.8584E-05	0.60462	0.00029097	0.52444	0.00025239	481.2455357733041	52.437	0.59315	52.437	52.219	52.813	0					63	20	4	0	0	0	0.010553	2	11033	11033;11071		65.474	9.9709	1	909490			34	1727	23	23	42;43	42					-0.005428329272717747
AATEQEISL	9	Unmodified	_AATEQEISL_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.24542236328125	2	481.245472	960.476391	0.02033	9.7836E-06	0.44209	0.00021275	0.46242	0.00022254	481.24546976808506	52.398	0.60115	52.466	52.203	52.804	0.067173					70	24	5	0	0	0	0.0085356	3	10912	10868;10912;10955		71.708	13.986	1	762180			35	1727	23	23	44;45;46	45					-0.005428329272717747
AATMKAKTDLK	11	Unmodified	_AATMKAKTDLK_					0	0	0		PRKAR1B|p.V215M|1|0.23|ENSG00000188191|chr7:596211-596211|C/T|missense_variant	PRKAR1B|p.V215M|1|0.23|ENSG00000188191|chr7:596211-596211|C/T|missense_variant	PRKAR1B|p.V215M|1|0.23|ENSG00000188191|chr7:596211-596211|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3346557617188	2	589.334098	1176.65364	0.057618	3.3956E-05	2.0568	0.0012121	2.1144	0.0012461	589.3344391011286	58.542	1.1714	58.542	58.386	59.558	0					82	42	5	0	0	0	0.297	2	13010	13010;13045		18.373	1.2602	1	1006600			36	7676	24	24	47;48	47					0.07238299351183741
AATTVEEIL	9	Unmodified	_AATTVEEIL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7581481933594	2	473.758215	945.501877	0.24258	0.00011492	0.026528	1.2568E-05	0.2691	0.00012749	473.75802511929334	63.749	0.70187	63.749	63.563	64.264	0					49	24	3	0	0	0	0.0076571	2	14539	14492;14539		74.423	8.5609	1	550350			37	3384	25	25	49;50	50					0.026946415951329072
AATTVEEIL	9	Unmodified	_AATTVEEIL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7579345703125	2	473.758215	945.501877	0.14489	6.8644E-05	-0.10396	-4.9252E-05	0.040933	1.9392E-05	473.7580538594486	63.707	0.60941	63.778	63.534	64.143	0.071018					35	20	2	0	0	0	0.004452	3	14318	14309;14318;14372		92.822	17.893	1	648090			38	3384	25	25	51;52;53	52					0.026946415951329072
AATYMQEFLP	10	Unmodified	_AATYMQEFLP_					0	0	0		PHKA1|p.V1211M|1|0.47|ENSG00000067177|chrX:72581043-72581043|C/T|missense_variant	PHKA1|p.V1211M|1|0.47|ENSG00000067177|chrX:72581043-72581043|C/T|missense_variant	PHKA1|p.V1211M|1|0.47|ENSG00000067177|chrX:72581043-72581043|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8136596679688	2	585.778625	1169.5427	0.81281	0.00047613	-3.8247	-0.0022404	-3.0119	-0.0017643	585.7764069441616	92.726	0.27225	92.726	92.579	92.851	0					11	9	2	0	0	0	0.31731	1	23352	23352		6.2058	0.9089	1	86639			39	7667	26	26	54	54					-0.035293403568857684
AAVYVMREL	9	Unmodified	_AAVYVMREL_					0	0	0			REV__nc|ENSG00000070882|Q9H4L5-4|OSBPL3	REV__nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2814331054688	2	526.283877	1050.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.505	1	65.505	65.005	66.005	0								0	0	0	0.22204	1	15039	15039		14.838	4.7643	1		+		40	8154	27	27	55	55					0.02994687088221326
AAWERASGI	9	Unmodified	_AAWERASGI_					0	0	0		ENST00000566559.5_3_16:67572255-67572402:+|nuORF	ENST00000566559.5_3_16:67572255-67572402:+|nuORF	ENST00000566559.5_3_16:67572255-67572402:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.74078369140625	2	480.748516	959.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.096	1	24.096	23.596	24.596	0								0	0	0	0.28073	1	2589	2589		2.9952	0.69251	1				41	7180	28	28	56	56					0.0011173009490903496
AAYAEATSSL	10	Unmodified	_AAYAEATSSL_					0	0	0		sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.236328125	2	492.237647	982.460741	0.22477	0.00011064	-2.2046	-0.0010852	-1.9798	-0.00097455	492.23643074573164	52.478	0.33865	52.478	52.246	52.584	0					26	11	3	0	0	0	0.27354	1	11064	11064		25.399	0.72543	1	131380			42	13389	29	29	57	57					-0.03119119444329499
AAYAEATSSL	10	Unmodified	_AAYAEATSSL_					0	0	0		sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2364501953125	2	492.237647	982.460741	0.29693	0.00014616	-2.0475	-0.0010079	-1.7506	-0.00086169	492.236525454043	52.374	0.45742	52.441	52.267	52.724	0.067173					31	17	2	0	0	0	0.33099	1	10892	10892		19.257	1.1106	1	106340			43	13389	29	29	58	58					-0.03119119444329499
ACAEQAPHF	9	Unmodified	_ACAEQAPHF_					0	0	0		OBSCN-CASZ1|1|fusion;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2156066894531	2	487.213452	972.412351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.738	1	50.738	50.238	51.238	0								0	0	0	0.27427	1	10537	10537		4.3292	1.44	1				44	3557	30	30	59	59					-0.0749589156522461
ACFAWLLGCL	10	Unmodified	_ACFAWLLGCL_					0	0	0			REV__ENST00000487121.1_1_2:47136034-47168791:-|nuORF	REV__ENST00000487121.1_1_2:47136034-47168791:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7702026367188	2	548.769548	1095.52454	0.38478	0.00021116	1.2052	0.00066139	1.59	0.00087255	548.7700204035863	96.124	0.55091	96.124	95.872	96.423	0					93	29	5	0	0	0	0.28703	1	24385	24385		24.674	3.1369	1	773500	+		45	10508	31	31	60	60					-0.019397538125986102
ACFAWLLGCL	10	Unmodified	_ACFAWLLGCL_					0	0	0			REV__ENST00000487121.1_1_2:47136034-47168791:-|nuORF	REV__ENST00000487121.1_1_2:47136034-47168791:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7701416015625	2	548.769548	1095.52454	0.42528	0.00023338	1.2398	0.00068035	1.665	0.00091373	548.7699501873951	96.081	0.48652	96.121	95.876	96.363	0.039772					84	26	5	0	0	0	0.21381	1	24220	24220		32.117	4.4882	1	753490	+		46	10508	31	31	61	61					-0.019397538125986102
ACFKKKKL	8	Unmodified	_ACFKKKKL_					0	0	0		RPL6|p.Y216C|1|0.39|ENSG00000089009|chr12:112405920-112405920|T/C|missense_variant	RPL6|p.Y216C|1|0.39|ENSG00000089009|chr12:112405920-112405920|T/C|missense_variant	RPL6|p.Y216C|1|0.39|ENSG00000089009|chr12:112405920-112405920|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.3027648925781	2	483.301873	964.589193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.01	1	101.06	100.56	101.56	0.042839								0	0	0	0.38822	1	25700	25700		0.79363	0.79363	1				47	13353	32	32	62	62					0.10548189055725743
ACHYLRRRE	9	Unmodified	_ACHYLRRRE_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8780517578125	3	401.876974	1202.60909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.508	1	25.599	25.099	26.099	0.091507								0	0	0	0.29233	1	2866	2866		0.26902	0.033176	1		+		48	11085	33	33	63	63					0.015893330483550017
ACNVPEPEEKF	11	Unmodified	_ACNVPEPEEKF_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2;ENST00000509741.1_1_5:75970496-75973199:+|nuORF	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.7905883789062	2	631.789721	1261.56489	0.076334	4.8227E-05	0.26382	0.00016668	0.34015	0.0002149	631.7899182430167	46.36	0.66803	46.446	45.834	46.502	0.085617					43	24	2	0	0	0	0.40055	1	9069	9069		4.1895	0.59301	1	157410			49	3257	34	34	64	64					-0.05543160679144421
ACPHRYQA	8	Unmodified	_ACPHRYQA_					0	0	0			REV__ENSG00000151748|ENST00000324679|SAV1	REV__ENSG00000151748|ENST00000324679|SAV1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.9112548828125	2	473.221611	944.42867	-0.49549	-0.00023447	-1.3355	-0.00063198	-1.831	-0.00086645	473.2209244436909	23.05	0.070749	23.05	22.993	23.064	0					8	6	2	0	0	0	0.3576	1	2300	2300		0.79363	0.10326	1	9072.3	+		50	9654	35	35	65	65					-0.045767656084763075
ACSALSDHGAL	11	Unmodified	_ACSALSDHGAL_					0	0	0		ENST00000317122.2_1_1:16160974-16161130:-|nuORF	ENST00000317122.2_1_1:16160974-16161130:-|nuORF	ENST00000317122.2_1_1:16160974-16161130:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3036499023438	2	522.742573	1043.47059	0.7237	0.00037831	1.2043	0.00062956	1.928	0.0010079	522.7426115287731	84.327	0.27575	84.327	84.079	84.355	0					23	16	2	0	0	0	0.30289	1	20752	20752		13.042	0.80181	1	623670			51	6021	36	36	66	66					-0.04940254710618319
ADAQKALDT	9	Unmodified	_ADAQKALDT_					0	0	0		ENSG00000254535|ENST00000421491|PABPC4L	ENSG00000254535|ENST00000421491|PABPC4L	ENSG00000254535|ENST00000421491|PABPC4L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.22613525390625	2	466.737814	931.461075	-0.17616	-8.222E-05	-1.17	-0.00054608	-1.3461	-0.0006283	466.737382095898	28.514	0.25589	28.514	28.443	28.699	0					12	9	2	0	0	0	0.25644	1	3890	3890		3.9444	0.66309	1	13349			52	5693	37	37	67	67					-0.0073969972447684995
ADATEAKNK	9	Unmodified	_ADATEAKNK_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;ENST00000495918.1_1_1:183103830-183107010:+|nuORF	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.24322509765625	2	474.243264	946.471974	-0.40122	-0.00019028	0.49181	0.00023324	0.09059	4.2962E-05	474.24336689845586	28.493	0.58641	28.493	28.342	28.929	0					61	30	3	0	0	0	0.098463	2	3877	3834;3877		32.786	10.049	1	209420			53	2751	38	38	68;69	69					-0.0034029735018066276
ADATEAKNK	9	Unmodified	_ADATEAKNK_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;ENST00000495918.1_1_1:183103830-183107010:+|nuORF	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2431335449219	2	474.243264	946.471974	-0.4022	-0.00019074	0.59797	0.00028358	0.19577	9.2841E-05	474.24340926313914	28.421	0.74574	28.503	28.304	29.05	0.082134					86	46	4	0	0	0	0.065576	1	3714	3714		39.95	7.164	1	233820			54	2751	38	38	70	70					-0.0034029735018066276
ADDTERLV	8	Unmodified	_ADDTERLV_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7294006347656	2	459.729989	917.445425	0.054909	2.5243E-05	-0.13899	-6.3897E-05	-0.084079	-3.8654E-05	459.72970830447605	33.43	0.65453	33.43	33.2	33.854	0					46	23	3	0	0	0	0.50159	1	5348	5348		12.532	3.9383	1	119620			55	3051	39	39	71	71					-0.016599862415318967
ADDTERLV	8	Unmodified	_ADDTERLV_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7295227050781	2	459.729989	917.445425	-0.13657	-6.2787E-05	-0.21975	-0.00010103	-0.35633	-0.00016382	459.72979189192773	33.368	0.63548	33.442	33.209	33.845	0.074322					52	25	3	0	0	0	0.50159	1	5185	5185		12.532	0	1	102400			56	3051	39	39	72	72					-0.016599862415318967
ADEGHWTPRG	10	Unmodified	_ADEGHWTPRG_					0	0	0			REV__ENST00000335647.9_1_6:149922841-149924410:-|nuORF	REV__ENST00000335647.9_1_6:149922841-149924410:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2576293945312	2	563.257237	1124.49992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.937	1	31.011	30.511	31.511	0.073782								0	0	0	0.34018	1	4452	4452		0	0	1		+		57	11439	40	40	73	73					-0.05734974370125201
ADFLAEIEAL	10	Unmodified	_ADFLAEIEAL_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.28466796875	2	546.284597	1090.55464	0.53015	0.00028961	-0.22421	-0.00012248	0.30594	0.00016713	546.2843583953245	97.225	0.36772	97.225	97.02	97.387	0					43	16	3	0	0	0	0.11267	2	24734	24678;24734		43.772	18.373	1	442840			58	1272	41	41	74;75	75					0.012985996579345738
ADFLAEIEAL	10	Unmodified	_ADFLAEIEAL_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2847290039062	2	546.284597	1090.55464	0.56088	0.0003064	-0.24714	-0.00013501	0.31375	0.0001714	546.2843226820321	97.175	0.41262	97.216	97.076	97.489	0.040855					47	19	3	0	0	0	0.11267	2	24517	24517;24568		43.772	18.781	1	286210			59	1272	41	41	76;77	76					0.012985996579345738
ADIRGKGF	8	Unmodified	_ADIRGKGF_					0	0	0		nc|ENSG00000169919|P08236-3|GUSB;ENSG00000169919|ENST00000304895|GUSB	nc|ENSG00000169919|P08236-3|GUSB	nc|ENSG00000169919|P08236-3|GUSB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.88519287109375	2	432.240327	862.466101	0.21434	9.2645E-05	1.0557	0.00045631	1.27	0.00054896	432.24064270378153	38.404	0.83117	38.491	38.209	39.04	0.08688					68	30	4	0	0	0	0.3576	1	6768	6768		2.5775	0.51773	1	156140			60	4366	42	42	78	78					0.029366489288122466
ADIRGKGF	8	Unmodified	_ADIRGKGF_					0	0	0		nc|ENSG00000169919|P08236-3|GUSB;ENSG00000169919|ENST00000304895|GUSB	nc|ENSG00000169919|P08236-3|GUSB	nc|ENSG00000169919|P08236-3|GUSB	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	432.240327	862.466101	0.44737	0.00019337	0.75408	0.00032594	1.2014	0.00051931	432.2405259071599	38.509	0.88866	38.509	38.274	39.162	0	0.009172	-8.9371E-05	NaN	2.5775	59	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158370			61	4366	42	42							0.029366489288122466
ADKMDMSL	8	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_		ADKM(1)DM(1)SL		ADKM(77)DM(77)SL	1	0	2		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7043762207031	2	492.704268	983.393983	0.19669	9.691E-05	-0.21724	-0.00010704	-0.020552	-1.0126E-05	492.7042595649889	35.787	0.38234	35.787	35.537	35.919	0					44	14	4	0	0	0	0.021817	1	6021	6021		76.825	40.781	1	452440			62	4933	43	43	79	79		286;287			-0.09837814322099803
ADKMDMSL	8	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_		ADKM(1)DM(1)SL		ADKM(96)DM(96)SL	1	0	2		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.70452880859375	2	492.704268	983.393983	0.22497	0.00011085	0.35664	0.00017572	0.58161	0.00028656	492.70433956424563	36.106	1.2633	36.106	35.892	37.156	0					77	48	2	0	0	0	0.034172	2	6117	6117;6163		96.367	60.322	1	493170			63	4933	43	43	80;81	80		286;287			-0.09837814322099803
ADKMDMSL	8	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_		ADKM(1)DM(1)SL		ADKM(83)DM(83)SL	1	0	2		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.704345703125	2	492.704268	983.393983	0.10927	5.3836E-05	0.027221	1.3412E-05	0.13649	6.7248E-05	492.7041905017584	39.59	4.2655	39.59	37.194	41.459	0					274	153	2	0	0	0	0.015232	9	7160	6924;6973;7020;7066;7112;7160;7207;7249;7296		82.529	48.427	1	366420			64	4933	43	43	82;83;84;85;86;87;88;89;90	87		286;287			-0.09837814322099803
ADKMDMSL	8	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_		ADKM(1)DM(1)SL		ADKM(83)DM(83)SL	1	0	2		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7043762207031	2	492.704268	983.393983	0.19697	9.7049E-05	-0.12361	-6.0901E-05	0.073366	3.6148E-05	492.70424753610024	35.67	0.40732	35.749	35.513	35.92	0.078831					44	14	4	0	0	0	0.015232	2	5846	5846;5892		82.529	49.941	1	399910			65	4933	43	43	91;92	91		286;287			-0.09837814322099803
ADKMDMSL	8	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_		ADKM(1)DM(1)SL		ADKM(86)DM(86)SL	1	0	2		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7044982910156	2	492.704268	983.393983	0.22707	0.00011188	-0.13725	-6.7623E-05	0.089825	4.4257E-05	492.70435410324137	36.011	0.99486	36.092	35.901	36.896	0.081219					91	40	4	0	0	0	0.018358	2	5980	5936;5980		86.332	52.229	1	365320			66	4933	43	43	93;94	94		286;287			-0.09837814322099803
ADKMDMSL	8	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_		ADKM(1)DM(1)SL		ADKM(86)DM(86)SL	1	0	2		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7043151855469	2	492.704268	983.393983	0.18844	9.2845E-05	0.059629	2.9379E-05	0.24807	0.00012222	492.70419764676683	39.406	4.589	39.494	36.903	41.492	0.088562					320	174	3	0	0	0	0.018358	8	6998	6769;6818;6866;6909;6954;6998;7044;7090		86.332	50.288	1	284100			67	4933	43	43	95;96;97;98;99;100;101;102	100		286;287			-0.09837814322099803
ADKMDMSL	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_		ADKM(0.001)DM(0.999)SL		ADKM(-30)DM(30)SL	1	0	1		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.70648193359375	2	484.706811	967.399068	-0.076084	-3.6878E-05	0.18928	9.1744E-05	0.11319	5.4866E-05	484.70674127777806	49.844	0.79067	49.844	49.314	50.105	0					43	27	3	0	0	0	0.033785	2	10259	10182;10259		66.457	41.057	2	148980			68	4933	43	44	103;104	104		286;287			-0.08593510459479603
ADKMDMSL	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_		ADKM(0.021)DM(0.979)SL		ADKM(-17)DM(17)SL	1	0	1		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.70697021484375	2	484.706811	967.399068	-0.085576	-4.1479E-05	-0.13093	-6.3464E-05	-0.21651	-0.00010494	484.70686528180505	52.35	1.8483	52.35	51.386	53.234	0					144	65	4	0	0	0	0.13053	1	11159	11159		49.554	29.101	2	506900			69	4933	43	44	105	105		286;287			-0.08593510459479603
ADKMDMSL	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_		ADKM(0.021)DM(0.979)SL		ADKM(-17)DM(17)SL	1	0	1		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7070007324219	2	484.706811	967.399068	-0.072371	-3.5079E-05	-0.0048471	-2.3494E-06	-0.077218	-3.7428E-05	484.7067195776214	49.679	0.66943	49.752	49.401	50.07	0.073658					43	23	2	0	0	0	0.15771	1	10103	10103		45.7	20.3	2	118510			70	4933	43	44	106	106		286;287			-0.08593510459479603
ADKMDMSL	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_		ADKM(0.345)DM(0.655)SL		ADKM(-2.8)DM(2.8)SL	1	0	1		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7067565917969	2	484.706811	967.399068	0.029767	1.4428E-05	0.20931	0.00010145	0.23907	0.00011588	484.7067902029124	52.333	1.6447	52.4	51.768	53.413	0.067173					132	67	3	0	0	0	0.13561	1	10852	10852		75.761	39.717	2	405210			71	4933	43	44	107	107		286;287			-0.08593510459479603
ADLDVGRIE	9	Unmodified	_ADLDVGRIE_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2588195800781	2	494.258914	986.503274	-0.011214	-5.5425E-06	-0.2043	-0.00010098	-0.21551	-0.00010652	494.2588013736036	29.189	0.78696	29.189	28.971	29.758	0					135	45	4	0	0	0	0.031665	1	4098	4098		49.933	13.427	1	836010	+		72	8932	44	45	108	108					0.009482756839020112
ADLDVGRIE	9	Unmodified	_ADLDVGRIE_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.25885009765625	2	494.258914	986.503274	-0.014379	-7.1069E-06	-0.12313	-6.0856E-05	-0.13751	-6.7963E-05	494.2588339999909	29.079	1.2462	29.157	28.931	30.177	0.078287					172	77	4	0	0	0	0.03472	1	3944	3944		47.749	7.799	1	943520	+		73	8932	44	45	109	109					0.009482756839020112
ADLFLGHIF	9	Unmodified	_ADLFLGHIF_					0	0	0			REV__DNAH7|p.G3932A|1|0.12|ENSG00000118997|chr2:195740839-195740839|C/G|missense_variant	REV__DNAH7|p.G3932A|1|0.12|ENSG00000118997|chr2:195740839-195740839|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7611694335938	2	516.779285	1031.54402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.383	1	64.453	63.953	64.953	0.07019								0	0	0	0.24995	1	14553	14553		9.3474	1.4373	1		+		74	7887	45	46	110	110					0.02950661794170628
ADNLSFAIRVP	11	Unmodified	_ADNLSFAIRVP_					0	0	0			REV__ENSG00000156265|ENST00000399928|MAP3K7CL	REV__ENSG00000156265|ENST00000399928|MAP3K7CL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8282470703125	2	601.830037	1201.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.163	1	19.253	18.753	19.753	0.089705								0	0	0	0.33908	1	1211	1211		1.0715	0.38109	1		+		75	9750	46	47	111	111					0.05276488426079595
ADREELNYWI	10	Unmodified	_ADREELNYWI_					0	0	0		nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;ENSG00000079102|ENST00000436581|RUNX1T1	nc|ENSG00000079102|Q06455-6|RUNX1T1	nc|ENSG00000079102|Q06455-6|RUNX1T1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2152404785156	3	436.878815	1307.61462	0.32111	0.00014028	2.549	0.0011136	2.8701	0.0012539	437.21471385929135	89.648	0.98627	89.648	89.03	90.017	0					53	38	2	0	0	0	0.47119	1	22417	22417		0.77653	0.078866	1	81375			76	877	47	48	112	112					-0.026887096787959308
ADSEGFIPLTF	11	Unmodified	_ADSEGFIPLTF_					0	0	0		nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7955322265625	2	598.795329	1195.5761	0.57655	0.00034524	-0.058361	-3.4946E-05	0.51819	0.00031029	598.7949039063899	85.277	0.70657	85.277	84.898	85.605	0					56	27	3	0	0	0	0.21662	2	21085	21085;21091		27.629	6.0918	1	726180			77	3871	48	49	113;114	113					-0.013860153133464337
ADSEGFIPLTF	11	Unmodified	_ADSEGFIPLTF_					0	0	0		nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.7955932617188	2	598.795329	1195.5761	0.61557	0.0003686	-0.12913	-7.7323E-05	0.48644	0.00029128	598.7951249507101	85.24	0.62635	85.263	85.035	85.661	0.023125					61	25	3	0	0	0	0.173	1	20925	20925		34.402	5.3201	1	691260			78	3871	48	49	115	115					-0.013860153133464337
ADSEGFIPLTF	11	Unmodified	_ADSEGFIPLTF_					0	0	0		nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	598.795329	1195.5761	0.57655	0.00034524	-0.058361	-3.4946E-05	0.51819	0.00031029	598.7949039063899	85.277	0.70657	85.277	84.898	85.605	0	0.0069085	5.6094E-05	NaN	34.402	56	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	726180			79	3871	48	49							-0.013860153133464337
ADSEGFIPLTF	11	Unmodified	_ADSEGFIPLTF_					0	0	0		nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	598.795329	1195.5761	0.61557	0.0003686	-0.12913	-7.7323E-05	0.48644	0.00029128	598.7951249507101	85.24	0.62635	85.263	85.035	85.661	0.023125	-0.0069085	-2.866E-05	NaN	34.402	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691260			80	3871	48	49							-0.013860153133464337
ADSVLSLTF	9	Unmodified	_ADSVLSLTF_					0	0	0		ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7523498535156	2	476.752933	951.491313	-0.013357	-6.3681E-06	-1.4738	-0.00070263	-1.4871	-0.00070899	476.75221301044996	51.818	0.57401	51.885	51.653	52.227	0.067173					33	19	3	0	0	0	0.29105	1	10765	10765		7.9102	1.7044	1	133080			81	3402	49	50	116	116					0.013626589407067513
ADYNSREHG	9	Unmodified	_ADYNSREHG_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000491473.5_1_3:186501384-186502287:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF	nc|ENSG00000156976|Q14240-2|EIF4A2	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7247924804688	2	524.725769	1047.43699	-0.092085	-4.8319E-05	-0.43685	-0.00022923	-0.52893	-0.00027754	524.7255300030876	33.289	2.1938	33.289	32.183	34.377	0					113	89	2	0	0	0	0.32112	1	5243	5243		3.9444	0.3479	1	33781			82	7534	50	51	117	117					-0.08483540158135838
ADYRPTIKEN	10	Unmodified	_ADYRPTIKEN_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.8092651367188	2	603.809302	1205.60405	-0.021076	-1.2726E-05	-0.26649	-0.00016091	-0.28756	-0.00017363	603.8089032357334	45.319	0.43018	45.319	45.1	45.53	0					21	14	2	0	0	0	0.46083	1	8921	8921		2.7352	0	1	59322			83	3496	51	52	118	118					0.009473076667745772
ADYTPLVKVK	10	Unmodified	_ADYTPLVKVK_					0	0	0			REV__nc|ENSG00000136068|O75369-5|FLNB	REV__nc|ENSG00000136068|O75369-5|FLNB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3341064453125	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.307	1	22.409	21.909	22.909	0.10178								0	0	0	0.33984	1	1991	1991		0.40072	0.050084	1		+		84	9236	52	53	119	119					0.0881915819995811
AEAASLLHH	9	Unmodified	_AEAASLLHH_					0	0	0			REV__ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant	REV__ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7483825683594	2	474.748516	947.482479	-0.20152	-9.5673E-05	0.14678	6.9682E-05	-0.054748	-2.5991E-05	474.74851965974545	34.749	0.94373	34.749	34.535	35.479	0					73	34	3	0	0	0	0.14091	1	5697	5697		25.399	4.9457	1	353990	+		85	7707	53	54	120	120					0.00663730094913717
AEAASLLHH	9	Unmodified	_AEAASLLHH_					0	0	0			REV__ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant	REV__ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	474.748516	947.482479	-0.20152	-9.5673E-05	0.14678	6.9682E-05	-0.054748	-2.5991E-05	474.74851965974545	34.749	0.94373	34.749	34.535	35.479	0	-0.0041831	6.7467E-05	NaN	25.399	73	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353990	+		86	7707	53	54							0.00663730094913717
AEAASLLHH	9	Unmodified	_AEAASLLHH_					0	0	0			REV__ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant	REV__ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	474.748516	947.482479	-0.19136	-9.0849E-05	-0.2628	-0.00012476	-0.45416	-0.00021561	474.74853506357226	34.682	0.91312	34.758	34.466	35.379	0.076248	0.0041831	-0.00032142	NaN	25.399	107	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313620	+		87	7707	53	54							0.00663730094913717
AEAHSQSPLA	10	Unmodified	_AEAHSQSPLA_					0	0	0			REV__ENST00000525829.1_1_8:12219536-12219971:+|nuORF	REV__ENST00000525829.1_1_8:12219536-12219971:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7486572265625	2	505.748713	1009.48287	-0.062298	-3.1507E-05	-0.22655	-0.00011458	-0.28885	-0.00014609	505.74862961581636	23.7	1.225	23.799	23.543	24.768	0.099739					290	111	4	0	0	0	0.45443	1	2421	2421		3.9444	1.6417	1	1102500	+		88	12323	54	55	121	121					-0.02148894975903204
AEAIGRRYAY	10	Unmodified	_AEAIGRRYAY_					0	0	0			REV__nc|ENSG00000086205|Q04609-3|FOLH1	REV__nc|ENSG00000086205|Q04609-3|FOLH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.3050537109375	2	585.306729	1168.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.19	1	103.19	102.69	103.69	0								0	0	0	0.33738	1	26516	26516		3.2813	0.28607	1		+		89	8271	55	56	122	122					0.02135048594800537
AEALHAHGY	9	Unmodified	_AEALHAHGY_					0	0	0		nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;ENST00000431225.5_1_10:75551812-75554405:+|nuORF;ZSWIM8|p.P813Lfs*22|1|0.21|ENSG00000214655|chr10:73793708-73793708|C/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.82965087890625	2	484.732866	967.451179	-0.23824	-0.00011549	0.069175	3.3532E-05	-0.16907	-8.1954E-05	484.7330078441386	22.874	0.16149	22.976	22.891	23.052	0.10178					22	13	2	0	0	0	0.25504	1	2143	2143		4.756	0.81161	1	12277			90	7604	56	57	123	123					-0.03384842939203736
AEALPKQSV	9	Unmodified	_AEALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7659606933594	2	471.766374	941.518196	-0.31749	-0.00014978	-0.11347	-5.353E-05	-0.43095	-0.00020331	471.76627122604515	31.456	0.4181	31.456	31.258	31.676	0					40	18	3	0	0	0	0.24683	1	4710	4710		11.495	2.7493	1	85582			91	3261	57	58	124	124					0.04509767551905952
AEALPKQSV	9	Unmodified	_AEALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.766357421875	2	471.766374	941.518196	-0.34355	-0.00016208	-0.15004	-7.0784E-05	-0.49359	-0.00023286	471.7663084472898	31.436	0.41024	31.51	31.323	31.733	0.073782					35	19	2	0	0	0	0.19307	1	4602	4602		19.362	2.249	1	63156			92	3261	57	58	125	125					0.04509767551905952
AEASARPQL	9	Unmodified	_AEASARPQL_					0	0	0			REV__ENSG00000090470|ENST00000204549|PDCD7	REV__ENSG00000090470|ENST00000204549|PDCD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7659606933594	2	471.753798	941.493044	-0.31659	-0.00014935	-0.10414	-4.9128E-05	-0.42073	-0.00019848	471.7537533586882	31.342	0.24753	31.342	31.2	31.447	0					17	11	2	0	0	0	0.32112	1	4710	4710		3.9444	0.3479	1	18096	+		93	8303	58	59	126	126					0.019957127493285043
AEASCCRP	8	Unmodified	_AEASCCRP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4;ENSG00000221880|ENST00000344363|KRTAP1-3;ENSG00000188581|ENST00000306271|KRTAP1-1	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.6734313964844	2	418.673105	835.331658	0.035637	1.492E-05	0.82487	0.00034535	0.8605	0.00036027	418.67339803147235	28.166	0.65227	28.166	27.876	28.529	0					81	35	4	0	0	0	0.53557	1	3787	3787		4.3292	4.3292	1	258870			94	5498	59	60	127	127					-0.0925949587976902
AEASHVSRY	9	Unmodified	_AEASHVSRY_					0	0	0		nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENSG00000176915|ENST00000357997|ANKLE2;ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF	nc|ENSG00000176915|Q86XL3-2|ANKLE2	nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.75048828125	2	510.24888	1018.48321	0.16401	8.3688E-05	-0.11738	-5.9891E-05	0.046637	2.3796E-05	510.2487642482866	18.008	0.16114	18.092	18.022	18.183	0.083694					25	19	2	0	0	0	0.33978	1	963	963		1.4819	0.68827	1	13668			95	4678	60	61	128	128					-0.025294752560398592
AEDKENYKKF	10	Unmodified	_AEDKENYKKF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.54693603515625	3	424.547065	1270.61937	-0.13003	-5.5203E-05	-0.59146	-0.0002511	-0.72149	-0.00030631	424.5469972523126	20.71	0.92644	20.71	20.43	21.357	0					192	101	3	0	0	0	0.29918	1	1662	1662		15.538	5.2232	1	93326			96	1108;897	61	62	129	129					-0.005118255360457624
AEDKENYKKF	10	Unmodified	_AEDKENYKKF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.5470275878906	3	424.547065	1270.61937	-0.063342	-2.6892E-05	-0.42829	-0.00018183	-0.49163	-0.00020872	424.54698937011557	20.581	1.0155	20.681	20.5	21.515	0.099499					194	113	3	0	0	0	0.32016	1	1530	1530		17.863	4.3445	1	113920			97	1108;897	61	62	130	130					-0.005118255360457624
AEDLNTRVAY	10	Unmodified	_AEDLNTRVAY_					0	0	0		ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2877807617188	2	576.288202	1150.56185	-0.46496	-0.00026795	0.010959	6.3158E-06	-0.45401	-0.00026164	576.28809311811	41.264	0.28069	41.264	41.126	41.407	0					15	9	2	0	0	0	0.36848	1	7670	7670		15.248	3.0078	1	55691			98	2703	62	63	131	131					-0.007406677416156526
AEDLNTRVAY	10	Unmodified	_AEDLNTRVAY_					0	0	0		ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2867431640625	2	576.288202	1150.56185	-0.2886	-0.00016632	-0.27695	-0.0001596	-0.56555	-0.00032592	576.2877983863616	41.193	0.36082	41.283	41.067	41.428	0.089645					18	12	3	0	0	0	0.43771	1	7529	7529		7.1017	1.8711	1	35146			99	2703	62	63	132	132					-0.007406677416156526
AEDLVANFF	9	Unmodified	_AEDLVANFF_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2510986328125	2	513.250557	1024.48656	0.52288	0.00026837	-0.67763	-0.00034779	-0.15475	-7.9424E-05	513.25025138728	85.552	0.3053	85.552	85.381	85.686	0					17	14	2	0	0	0	0.098463	1	21146	21146		32.786	10.049	1	74276			100	2530	63	64	133	133					-0.024702252020460946
AEDVFIADF	9	Unmodified	_AEDVFIADF_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7427368164062	2	513.742565	1025.47058	0.15343	7.8824E-05	0.20675	0.00010622	0.36018	0.00018504	513.742570986495	86.517	0.36934	86.517	86.313	86.683	0					28	13	3	0	0	0	0.037705	2	21424	21424;21486		46.021	0	1	214040	+		101	9177	64	65	134;135	134					-0.04113931438951113
AEDVFIADF	9	Unmodified	_AEDVFIADF_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.259765625	2	513.742565	1025.47058	0.15343	7.8824E-05	0.20675	0.00010622	0.36018	0.00018504	513.742570986495	86.517	0.36934	86.517	86.313	86.683	0					28	13	3	0	0	0	0.2229	1	21401	21401		19.257	0	1	214040	+		102	9177	64	65	136	136					-0.04113931438951113
AEELERQGY	9	Unmodified	_AEELERQGY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7593994140625	2	547.759278	1093.504	-0.020121	-1.1021E-05	-0.94459	-0.00051741	-0.96471	-0.00052843	547.7584937126389	31.237	0.56589	31.311	31.091	31.657	0.073782					41	28	2	0	0	0	0.2359	1	4575	4575		14.405	6.2499	1	81063			103	1624	65	66	137	137					-0.03900929667042874
AEESDLSRQY	10	Unmodified	_AEESDLSRQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7752685546875	2	599.272749	1196.53095	-0.073091	-4.3801E-05	0.45365	0.00027186	0.38055	0.00022806	599.2729611052113	33.102	0.34372	33.102	32.905	33.248	0					24	13	2	0	0	0	0.41617	2	5212	5207;5212		10.151	6.2411	1	40197			104	856	66	67	138;139	139					-0.05945865846524612
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.3137817382812	2	615.313689	1228.61282	-0.39503	-0.00024307	0.71022	0.00043701	0.31518	0.00019394	615.3141278980013	73.227	1.2905	73.227	72.94	74.23	0					119	46	5	0	0	0	0.034243	1	17353	17353		107.1	44.527	1	7481500			105	1080	67	68	140	140					0.007662813032311533
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.3138427734375	2	615.313689	1228.61282	-0.20021	-0.00012319	0.42079	0.00025892	0.22058	0.00013573	615.3139461916585	73.138	0.64045	73.19	72.951	73.591	0.052574					90	24	5	0	0	0	0.001814	1	17231	17231		114.5	54.423	1	8065900			106	1080	67	68	141	141					0.007662813032311533
AEFKEAFSLF	10	Unmodified	_AEFKEAFSLF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000556757.5_1_14:90863574-90867886:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.8001708984375	2	594.800414	1187.58628	0.16976	0.00010098	-0.1645	-9.7843E-05	0.0052678	3.1333E-06	594.8004166070765	74.003	0.83311	74.003	73.77	74.604	0					52	30	2	0	0	0	0.038151	2	17610	17610;17656		60.899	32.405	1	924670			107	3189	68	69	142;143	142					-1.4075880926611717E-05
AEFKEAFSLF	10	Unmodified	_AEFKEAFSLF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000556757.5_1_14:90863574-90867886:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.8004150390625	2	594.800414	1187.58628	0.31109	0.00018504	-0.90552	-0.0005386	-0.59443	-0.00035357	594.8000653820744	73.954	0.50853	74.003	73.748	74.257	0.048546					30	18	2	0	0	0	0.038151	1	17454	17454		60.899	25.967	1	738950			108	3189	68	69	144	144					-1.4075880926611717E-05
AEGDLVRLL	9	Unmodified	_AEGDLVRLL_					0	0	0		ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.28802490234375	2	493.287474	984.560395	0.60262	0.00029726	-0.068731	-3.3904E-05	0.53388	0.00026336	493.2875552399124	64.174	0.41029	64.174	63.946	64.356	0					17	13	2	0	0	0	0.081383	1	14631	14631		36.506	14.969	1	89650			109	1192	69	70	145	145					0.06749742960278127
AEGDLVRLL	9	Unmodified	_AEGDLVRLL_					0	0	0		ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.286865234375	2	493.287474	984.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.141	1	64.212	63.712	64.712	0.071014								0	0	0	0.14533	1	14479	14479		26.268	12.362	1				110	1192	69	70	146	146					0.06749742960278127
AEGKKWFYPE	10	Unmodified	_AEGKKWFYPE_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.5555725097656	3	418.876634	1253.60807	0.06874	2.8793E-05	-0.42371	-0.00017748	-0.35498	-0.00014869	418.87633829278377	43.609	0.39014	43.609	43.439	43.829	0					20	14	2	0	0	0	0.31834	1	8430	8430		2.4348	2.2755	1	36534	+		111	9136	70	71	147	147					-0.008586028395257017
AEGKKWFYPE	10	Unmodified	_AEGKKWFYPE_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	418.876634	1253.60807	-0.18533	-7.763E-05	-0.14674	-6.1467E-05	-0.33207	-0.0001391	418.87638323971515	43.491	0.28603	43.58	43.481	43.767	0.088921	-0.014395	0.0001967	NaN	2.4348	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32149	+		112	9136	70	71							-0.008586028395257017
AEGLGTYKL	9	Unmodified	_AEGLGTYKL_					0	0	0			REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2484130859375	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.866	1	33.94	33.44	34.44	0.074322								0	0	0	0.25692	1	5327	5327		7.9102	0.62092	1		+		113	13238	71	72	148	148					0.030063651776117695
AEGTHVIQR	9	Unmodified	_AEGTHVIQR_					0	0	0			REV__ENSG00000170631|ENST00000394909|ZNF16	REV__ENSG00000170631|ENST00000394909|ZNF16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.77276611328125	2	505.772522	1009.53049	-0.36739	-0.00018581	-0.15071	-7.6223E-05	-0.51809	-0.00026204	505.77277892641456	21.558	2.4409	21.558	21.341	23.782	0					622	225	5	0	0	0	0.0040275	2	1886	1886;1921		103.35	21.65	1	5524900	+		114	10221	72	73	149;150	149					0.02610804014943824
AEGTHVIQR	9	Unmodified	_AEGTHVIQR_					0	0	0			REV__ENSG00000170631|ENST00000394909|ZNF16	REV__ENSG00000170631|ENST00000394909|ZNF16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7728271484375	2	505.772522	1009.53049	0.0088497	4.4759E-06	-0.4641	-0.00023473	-0.45525	-0.00023025	505.77265403156616	21.373	2.3248	21.474	21.254	23.579	0.10178					564	229	5	0	0	0	0.0027323	2	1738	1738;1772		111.29	18.796	1	5928000	+		115	10221	72	73	151;152	151					0.02610804014943824
AEHVTFNNPHD	11	Unmodified	_AEHVTFNNPHD_					0	0	0		ENSG00000186009|ENST00000335288|ATP4B	ENSG00000186009|ENST00000335288|ATP4B	ENSG00000186009|ENST00000335288|ATP4B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.3037109375	2	640.786358	1279.55816	0.2559	0.00016398	0.098289	6.2982E-05	0.35419	0.00022696	641.2878286170802	73.64	0.26026	73.693	73.57	73.831	0.052574					11	9	2	0	0	0	0.31086	1	17385	17385		2.4985	0.65425	1	59252			116	5061	73	74	153	153					-0.07043337515483472
AEIDVIFKDF	10	Unmodified	_AEIDVIFKDF_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.34033203125	2	598.813522	1195.61249	0.38032	0.00022774	0.42708	0.00025574	0.8074	0.00048348	598.8135259671308	78.429	0.3031	78.459	78.286	78.589	0.030159					18	10	3	0	0	0	0.31067	1	18796	18796		14.957	9.2253	1	108190			117	13348	74	75	154	154					0.02250861583365804
AEIDVIFKDF	10	Unmodified	_AEIDVIFKDF_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	598.813522	1195.61249	0.26195	0.00015686	0.68333	0.00040919	0.94528	0.00056604	598.8136848899287	78.427	0.29503	78.427	78.272	78.568	0	-0.016319	0.00010587	NaN	17.863	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81074			118	13348	74	75							0.02250861583365804
AEIRSLVTW	9	Unmodified	_AEIRSLVTW_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.3152465820312	2	537.800749	1073.58694	0.35688	0.00019193	-0.47045	-0.00025301	-0.11357	-6.1078E-05	537.8003295627689	61.697	0.68987	61.697	61.595	62.285	0					40	31	2	0	0	0	0.22247	1	13963	13963		20.415	5.5763	1	543190			119	2097;2099	75	76	155	155					0.053094318516286876
AEIVEGENHTY	11	Unmodified	_AEIVEGENHTY_					0	0	0		FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000474358.5_1_X:153580213-153581146:-|nuORF	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.2885131835938	2	631.288399	1260.56225	-0.023902	-1.5089E-05	0.34345	0.00021682	0.31955	0.00020173	631.2885594847114	35.528	0.68438	35.528	35.314	35.999	0					54	25	3	0	0	0	0.11456	4	5960	5916;5960;6010;6055		43.477	34.094	1	238410			120	5255	76	77	156;157;158;159	157					-0.05761292812417196
AEIVEGENHTY	11	Unmodified	_AEIVEGENHTY_					0	0	0		FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000474358.5_1_X:153580213-153581146:-|nuORF	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.2883911132812	2	631.288399	1260.56225	0.14493	9.1491E-05	0.15524	9.8003E-05	0.30017	0.00018949	631.2884366937961	35.459	0.6047	35.537	35.339	35.943	0.078827					54	22	4	0	0	0	0.11456	3	5828	5779;5828;5884		43.477	37.745	1	216820			121	5255	76	77	160;161;162	161					-0.05761292812417196
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000183785|ENST00000330423|TUBA8;TUBA3C|p.V288M|1|0.24|ENSG00000198033|chr13:19177121-19177121|C/T|missense_variant;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;nc|ENSG00000183785|Q9NY65-2|TUBA8	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7713623046875	2	544.772188	1087.52982	-0.23114	-0.00012592	-0.5771	-0.00031439	-0.80824	-0.00044031	544.7716699831237	23.185	0.43512	23.185	23.064	23.499	0					74	41	3	0	0	0	0.28919	1	2343	2343		8.1555	2.4237	1	36200			122	2217	77	78	163	163					-0.010440354247748473
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000183785|ENST00000330423|TUBA8;TUBA3C|p.V288M|1|0.24|ENSG00000198033|chr13:19177121-19177121|C/T|missense_variant;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;nc|ENSG00000183785|Q9NY65-2|TUBA8	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	544.772188	1087.52982	0.041095	2.2387E-05	-0.60441	-0.00032926	-0.56331	-0.00030688	544.7716117341021	22.976	0.35825	23.078	22.973	23.331	0.10178	-0.053617	-1.4048E-05	NaN	8.1555	70	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44236			123	2217	77	78							-0.010440354247748473
AEKEVKGAVY	10	Unmodified	_AEKEVKGAVY_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2980346679688	2	547.298039	1092.58152	0.07126	3.9E-05	0.00097446	5.3332E-07	0.072234	3.9534E-05	547.2980136111821	22.783	0.29609	22.885	22.756	23.052	0.10178					43	27	2	0	0	0	0.44021	1	2107	2107		6.6304	1.7334	1	33332			124	4248	78	79	164	164					0.0389370826915183
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7958374023438	2	525.795132	1049.57571	0.15279	8.0338E-05	0.40176	0.00021124	0.55455	0.00029158	525.795201460877	48.91	0.4862	48.91	48.683	49.169	0					39	16	3	0	0	0	0.0044683	2	9967	9967;10018		92.201	46.179	1	319870			125	1041	79	80	165;166	165					0.05290609757457787
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7954711914062	2	525.795132	1049.57571	-0.0094429	-4.965E-06	0.65126	0.00034243	0.64181	0.00033746	525.7953718806452	48.814	0.44118	48.891	48.691	49.132	0.076607					34	15	3	0	0	0	0.0047918	1	9843	9843		83.278	37.255	1	224600			126	1041	79	80	167	167					0.05290609757457787
AEKSNLLAEL	10	Unmodified	_AEKSNLLAEL_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA	REV__nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.303955078125	2	544.303321	1086.59209	0.41961	0.00022839	3.3818	0.0018407	3.8014	0.0020691	544.8066084072191	100.6	0.28093	100.6	100.46	100.74	0					21	16	2	0	0	0	0.38376	1	25716	25716		13.615	3.4643	1	46145	+		127	9858	80	81	168	168					0.05225690923566617
AELDRQIKSF	10	Unmodified	_AELDRQIKSF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.82763671875	2	603.827495	1205.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.081	1	40.081	39.581	40.581	0								0	0	0	0.3366	1	7318	7318		4.1895	0.59301	1				128	5313	81	82	169	169					0.04584184563464078
AELYKTTQALA	11	Unmodified	_AELYKTTQALA_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5561828613281	3	403.555561	1207.64485	0.064597	2.6068E-05	0.93211	0.00037616	0.99671	0.00040223	403.55578453195534	40.1	0.34225	40.1	39.894	40.237	0					14	11	2	0	0	0	0.40738	1	7325	7325		2.6312	0.72486	1	40835	+		129	10979	82	83	170	170					0.04933648986366279
AENKDEIAL	9	Unmodified	_AENKDEIAL_					0	0	0		XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant;ENSG00000079246|ENST00000392132|XRCC5;ENST00000429133.5_1_2:216974075-216982480:+|nuORF;ENST00000476360.1_1_2:216974075-216981630:+|nuORF	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.24200439453125	2	501.758746	1001.50294	0.2983	0.00014967	-0.66354	-0.00033294	-0.36524	-0.00018326	502.25977409465423	38.739	0.58232	38.826	38.488	39.07	0.08688					48	21	3	0	0	0	0.25052	1	6782	6782		8.7454	0	1	61187			130	879	83	84	171	171					0.002248559640406711
AENMKSSLVCL	11	Unmodified	_AENMKSSLVCL_					0	0	0		ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-4|CCDC66;nc|ENSG00000180376|A2RUB6-2|CCDC66;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66	ENST00000422788.5_1_3:56595403-56599181:+|nuORF	ENST00000422788.5_1_3:56595403-56599181:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7951049804688	2	597.796491	1193.57843	0.30205	0.00018057	-1.6614	-0.00099316	-1.3593	-0.0008126	597.7949342099969	91.989	0.89674	92.025	91.774	92.671	0.03653					93	31	4	0	0	0	0.297	1	23030	23030		18.373	1.2602	1	427120			131	4806	84	85	172	172					-0.010616261715085784
AENNNNMAMLI	11	Unmodified	_AENNNNMAMLI_					0	0	0		ENSG00000126860|ENST00000462804|EVI2A;nc|ENSG00000126860|P22794-2|EVI2A	ENSG00000126860|ENST00000462804|EVI2A	ENSG00000126860|ENST00000462804|EVI2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.7670288085938	2	617.781373	1233.54819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.821	1	44.909	44.409	45.409	0.08754								0	0	0	0.33503	1	8620	8620		2.4985	0.84587	1				132	2351	85	86	173	173					-0.05923984836726959
AENRIFEKNW	10	Unmodified	_AENRIFEKNW_					0	0	0		tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.22357177734375	3	436.222805	1305.64658	0.26849	0.00011712	2.0536	0.00089583	2.3221	0.0010129	436.2237184044166	35.565	0.52	35.565	35.334	35.854	0					29	18	2	0	0	0	0.45773	1	5934	5934		3.3196	0.88486	1	47529			133	13577	86	87	174	174					0.005987027949913681
AENRIFEKNW	10	Unmodified	_AENRIFEKNW_					0	0	0		tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.22442626953125	3	436.222805	1305.64658	0.010582	4.6163E-06	2.164	0.00094401	2.1746	0.00094862	436.22390163385023	35.466	0.59153	35.545	35.252	35.844	0.078827					43	22	3	0	0	0	0.44469	2	5789	5776;5789		5.7834	1.3773	1	61786			134	13577	86	87	175;176	176					0.005987027949913681
AEQESARQL	9	Unmodified	_AEQESARQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.244873046875	2	516.259445	1030.50434	0.048346	2.4959E-05	-0.078774	-4.0668E-05	-0.030428	-1.5709E-05	516.2594256414833	23.182	0.34769	23.284	23.147	23.495	0.10178					59	35	2	0	0	0	0.24942	1	2202	2202		10.151	5.3946	1	39665			135	4738	87	88	177	177					-0.009695099471855428
AEQQLSELQQ	10	Unmodified	_AEQQLSELQQ_					0	0	0			REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A	REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.2926635742188	2	587.290942	1172.56733	0.78144	0.00045893	-2.0659	-0.0012133	-1.2844	-0.00075434	587.2901084857732	71.096	0.57504	71.154	70.967	71.542	0.058578					40	20	3	0	0	0	0.43771	1	16588	16588		7.1017	1.3699	1	128740	+		136	9045	88	89	178	178					-0.012049889498257471
AERFFRKRV	9	Unmodified	_AERFFRKRV_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5561828613281	3	403.57188	1207.69381	0.10578	4.2691E-05	-0.38153	-0.00015398	-0.27575	-0.00011129	403.5717361674616	39.905	0.81333	39.905	39.692	40.505	0					35	28	2	0	0	0	0.25822	1	7325	7325		2.7352	2.7352	1	43221	+		137	9251	89	90	179	179					0.09827026856623888
AERFFRKRV	9	Unmodified	_AERFFRKRV_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.5713806152344	3	403.57188	1207.69381	-0.14558	-5.8753E-05	0.096004	3.8744E-05	-0.049578	-2.0008E-05	403.5719022217772	39.732	0.555	39.821	39.557	40.112	0.088562					33	20	2	0	0	0	0.33028	1	7130	7130		2.7352	1.8708	1	60629	+		138	9251	89	90	180	180					0.09827026856623888
AERFFRKRV	9	Unmodified	_AERFFRKRV_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	403.57188	1207.69381	-0.14558	-5.8753E-05	0.096004	3.8744E-05	-0.049578	-2.0008E-05	403.5719022217772	39.732	0.555	39.821	39.557	40.112	0.088562	-0.042015	0.00046474	NaN	2.7352	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60629	+		139	9251	89	90							0.09827026856623888
AERRSLDFSK	10	Unmodified	_AERRSLDFSK_					0	0	0			REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF	REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.88555908203125	3	403.550921	1207.63093	0.14817	5.9795E-05	0.25423	0.00010259	0.4024	0.00016239	403.5508501493276	33.335	0.68285	33.335	33.2	33.883	0					50	24	3	0	0	0	0.45945	1	5335	5335		1.4551	0	1	61081	+		140	10735	90	91	181	181					0.03542416277923621
AESIVRIDGG	10	Unmodified	_AESIVRIDGG_					0	0	0			REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7637023925781	2	508.772188	1015.52982	-0.27644	-0.00014065	0.085786	4.3646E-05	-0.19066	-9.7001E-05	508.77226112486863	40.953	0.57561	41.042	40.823	41.398	0.089642					46	21	3	0	0	0	0.34138	1	7493	7493		18.146	0	1	158900	+		141	10884	91	92	182	182					0.022679645752418764
AESIVVHTY	9	Unmodified	_AESIVVHTY_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.76373291015625	2	509.763832	1017.51311	-0.47195	-0.00024058	-0.061615	-3.1409E-05	-0.53357	-0.00027199	509.763791999203	41.167	0.67109	41.167	40.938	41.609	0					45	24	3	0	0	0	0.00054058	1	7644	7644		99.799	61.825	1	143160			142	2246	92	93	183	183					0.005054636892737108
AESIVVHTY	9	Unmodified	_AESIVVHTY_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7637023925781	2	509.763832	1017.51311	-0.3014	-0.00015364	-0.22088	-0.0001126	-0.52229	-0.00026624	509.7636787887161	41.091	0.41701	41.181	41.011	41.428	0.089642					33	14	3	0	0	0	0.00054058	1	7493	7493		99.799	61.825	1	123690			143	2246	92	93	184	184					0.005054636892737108
AESSIIHFE	9	Unmodified	_AESSIIHFE_					0	0	0		ENSG00000023445|ENST00000263464|BIRC3	ENSG00000023445|ENST00000263464|BIRC3	ENSG00000023445|ENST00000263464|BIRC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7362060546875	2	516.753464	1031.49238	0.63728	0.00032932	-3.1007	-0.0016023	-2.4634	-0.001273	516.751295882374	54.725	0.52536	54.79	54.563	55.089	0.065128					35	25	2	0	0	0	0.26684	1	11679	11679		10.824	0.64053	1	99589			144	483	93	94	185	185					-0.022111266903721116
AESYRIQTY	9	Unmodified	_AESYRIQTY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7766723632812	2	565.77747	1129.54039	-0.10743	-6.0783E-05	0.69178	0.00039139	0.58435	0.00033061	566.2794438664445	39.745	0.50307	39.745	39.568	40.071	0					28	16	3	0	0	0	0.27266	2	7237	7227;7237		10.151	6.2062	1	48615			145	3029	94	95	186;187	187					-0.019200527703333137
AESYRIQTY	9	Unmodified	_AESYRIQTY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7764892578125	2	565.77747	1129.54039	0.024148	1.3662E-05	-0.31476	-0.00017808	-0.29061	-0.00016442	565.7770971712072	39.674	0.29772	39.762	39.662	39.96	0.088562					15	10	2	0	0	0	0.28919	1	7079	7079		8.1555	3.2585	1	31626			146	3029	94	95	188	188					-0.019200527703333137
AETEADRLI	9	Unmodified	_AETEADRLI_					0	0	0		nc|ENSG00000253117|Q02509-3|OC90	nc|ENSG00000253117|Q02509-3|OC90	nc|ENSG00000253117|Q02509-3|OC90	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.26287841796875	2	509.264196	1016.51384	0.21338	0.00010867	-1.2633	-0.00064335	-1.0499	-0.00053468	509.2632915868475	37.033	0.65947	37.033	36.917	37.577	0					48	25	3	0	0	0	0.25174	1	6399	6399		7.2892	0.56607	1	133990			147	7615	95	96	189	189					0.006242583383254896
AETGKFLDL	9	Unmodified	_AETGKFLDL_					0	0	0			REV__ENST00000445194.2_1_20:29874377-29874470:-|nuORF	REV__ENST00000445194.2_1_20:29874377-29874470:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.25360107421875	2	497.266207	992.517862	-0.18185	-9.0427E-05	-0.41583	-0.00020678	-0.59768	-0.00029721	497.2660107768218	42.851	0.38136	42.851	42.682	43.063	0					18	12	2	0	0	0	0.19398	1	8191	8191		19.257	3.1079	1	62530	+		148	11900	96	97	190	190					0.02130347832053303
AETGQVQKI	9	Unmodified	_AETGQVQKI_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2691345214844	2	487.269281	972.52401	-0.26184	-0.00012759	0.17101	8.3329E-05	-0.090832	-4.426E-05	487.26931290650407	26.596	0.34457	26.683	26.502	26.846	0.0867					61	25	3	0	0	0	0.2546	1	3193	3193		12.241	2.1667	1	59998			149	200;3052	97	98	191	191					0.03664866063570571
AETLAQPLT	9	Unmodified	_AETLAQPLT_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.25848388671875	2	472.258382	942.502212	0.31122	0.00014697	0.13104	6.1883E-05	0.44225	0.00020886	472.25846545647875	55.207	0.48486	55.207	55.04	55.525	0					42	17	3	0	0	0	0.065576	1	11944	11944		39.95	1.7741	1	326040	+		150	10480	98	99	192	192					0.028660613149895653
AETLAQPLT	9	Unmodified	_AETLAQPLT_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2584533691406	2	472.258382	942.502212	0.22593	0.0001067	0.04377	2.0671E-05	0.2697	0.00012737	472.2584211651444	55.163	0.4494	55.228	55.068	55.517	0.065128					37	16	3	0	0	0	0.083124	1	11795	11795		36.127	1.7253	1	237620	+		151	10480	98	99	193	193					0.028660613149895653
AETTTLFQF	9	Unmodified	_AETTTLFQF_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.263427734375	2	529.263665	1056.51278	0.26152	0.00013841	-0.19951	-0.00010559	0.062009	3.2819E-05	529.2634337896945	78.674	0.47827	78.674	78.423	78.901	0					22	16	2	0	0	0	0.03472	1	19052	19052		47.749	21.407	1	132270			152	3892	99	100	194	194					-0.013219560305742561
AETTTLFQF	9	Unmodified	_AETTTLFQF_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2634887695312	2	529.263665	1056.51278	0.39618	0.00020968	-0.60427	-0.00031982	-0.20809	-0.00011013	529.2632627404375	78.547	0.40105	78.577	78.451	78.852	0.030159					19	13	2	0	0	0	0.02293	1	18876	18876		56.177	25.952	1	156720			153	3892	99	100	195	195					-0.013219560305742561
AETVRYSMCT	10	Unmodified	_AETVRYSMCT_					0	0	0		POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant	POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant	POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7574462890625	2	580.757366	1159.50018	0.38318	0.00022254	-0.84756	-0.00049223	-0.46438	-0.00026969	580.7572509560789	38.448	2.8388	38.448	37.897	40.736	0					283	102	6	0	0	0	0.29844	10	6804	6804;6849;6894;6936;6982;7030;7074;7171;7355;7472		22.736	8.2963	1	3114100			154	7673	100	101	196;197;198;199;200;201;202;203;204;205	196					-0.07319058756752383
AETVRYSMCT	10	Unmodified	_AETVRYSMCT_					0	0	0		POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant	POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant	POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7573852539062	2	580.757366	1159.50018	0.52943	0.00030747	-0.92528	-0.00053736	-0.39585	-0.00022989	580.757189397688	38.356	2.6874	38.443	37.935	40.623	0.086884					225	104	5	0	0	0	0.35104	7	6722	6635;6722;6766;6810;6858;6903;6983		17.113	0	1	2799300			155	7673	100	101	206;207;208;209;210;211;212	207					-0.07319058756752383
AEVAAEKSF	9	Unmodified	_AEVAAEKSF_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.2423400878906	2	476.242732	950.470912	-0.36646	-0.00017453	0.30679	0.00014611	-0.059675	-2.842E-05	476.24267482055706	32.538	0.41969	32.538	32.362	32.781	0					45	21	3	0	0	0	0.11936	1	5045	5045		28.234	14.328	1	50395			156	980	101	102	213	213					-0.006305117191004683
AEVAAEKSF	9	Unmodified	_AEVAAEKSF_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2421875	2	476.242732	950.470912	-0.33564	-0.00015985	0.16669	7.9384E-05	-0.16895	-8.0463E-05	476.2426982836171	32.485	0.39766	32.559	32.355	32.752	0.07378					37	22	2	0	0	0	0.17382	1	4902	4902		21.59	12.207	1	51390			157	980	101	102	214	214					-0.006305117191004683
AEVFNYREF	9	Unmodified	_AEVFNYREF_					0	0	0		ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.3372192382812	2	587.780013	1173.54547	0.52663	0.00030954	0.22095	0.00012987	0.74758	0.00043941	587.7797724261784	57.196	0.30815	57.196	57.046	57.354	0					16	10	2	0	0	0	0.24942	1	12530	12530		10.151	3.9448	1	108070			158	4996	102	103	215	215					-0.03435748907713787
AEVFNYREF	9	Unmodified	_AEVFNYREF_					0	0	0		ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.3377685546875	2	587.780013	1173.54547	0.71623	0.00042098	-0.34247	-0.00020129	0.37376	0.00021969	587.7793169251808	57.137	0.28637	57.205	57.068	57.354	0.068375					14	10	2	0	0	0	0.24025	1	12352	12352		16.566	8.9569	1	65484			159	4996	102	103	216	216					-0.03435748907713787
AEVLGLILRY	10	Unmodified	_AEVLGLILRY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8477783203125	2	573.847699	1145.68084	0.31813	0.00018256	0.20899	0.00011993	0.52712	0.00030249	573.8477345027761	76.729	0.31713	76.729	76.55	76.867	0					19	10	2	0	0	0	0.20229	1	18450	18450		33.445	15.072	1	140730			160	5692	103	104	217	217					0.11383150953906807
AEVLGLILRY	10	Unmodified	_AEVLGLILRY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8479614257812	2	573.847699	1145.68084	0.36824	0.00021132	0.19016	0.00010912	0.55841	0.00032044	573.8478610742263	76.699	0.4158	76.738	76.552	76.968	0.03923					19	14	2	0	0	0	0.32016	1	18315	18315		20.415	8.1739	1	152330			161	5692	103	104	218	218					0.11383150953906807
AEWAVRSM	8	Unmodified	_AEWAVRSM_					0	0	0			REV__ENST00000478204.5_1_1:33557816-33585780:+|nuORF	REV__ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2236633300781	2	475.231645	948.448736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.108	1	20.108	19.608	20.608	0								0	0	0	0.38822	1	1520	1520		6.2058	0.44535	1		+		162	9445	104	105	219	219					-0.0275501466849164
AEWEALMISL	10	Unmodified	_AEWEALMISL_					0	0	0			REV__nc|ENSG00000129197|Q86UA6-3|RPAIN	REV__nc|ENSG00000129197|Q86UA6-3|RPAIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7939453125	2	581.794275	1161.574	0.41364	0.00024065	-0.58472	-0.00034019	-0.17108	-9.9534E-05	581.7938459450811	90.482	0.63771	90.482	90.303	90.94	0					39	23	2	0	0	0	0.32016	1	22706	22706		20.415	8.1739	1	130410	+		163	9032	105	106	220	220					-0.000327673227957348
AEWEALMISL	10	Unmodified	_AEWEALMISL_					0	0	0			REV__nc|ENSG00000129197|Q86UA6-3|RPAIN	REV__nc|ENSG00000129197|Q86UA6-3|RPAIN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	581.794275	1161.574	0.23426	0.00013629	-0.38787	-0.00022566	-0.15362	-8.9374E-05	581.7939959785035	90.387	0.42752	90.421	90.28	90.708	0.034065	-0.030647	0.00015517	NaN	20.415	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133740	+		164	9032	105	106							-0.000327673227957348
AEYERQQNL	9	Unmodified	_AEYERQQNL_					0	0	0			REV__ENST00000468892.5_1_3:183907488-183910505:+|nuORF	REV__ENST00000468892.5_1_3:183907488-183910505:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.792236328125	2	575.778002	1149.54145	0.21083	0.00012139	1.7388	0.0010012	1.9496	0.0011225	575.7790149099868	73.625	2.0703	73.625	73.541	75.611	0					129	76	2	0	0	0	0.24767	1	18077	18077		13.042	0.80181	1	1497800	+		165	9863	106	107	221	221					-0.027338384014228723
AEYFELPEL	9	Unmodified	_AEYFELPEL_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.77197265625	2	555.771322	1109.52809	0.73274	0.00040723	0.4955	0.00027538	1.2282	0.00068262	556.2734636378519	92.346	0.53749	92.383	92.048	92.585	0.03653					35	18	3	0	0	0	0.25979	1	23088	23088		11.64	0	1	135170			166	4751	107	108	222	222					-0.02229089233378545
AFAHFAHEKL	10	Unmodified	_AFAHFAHEKL_					0	0	0		sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.806884765625	2	585.806365	1169.59818	0.55957	0.0003278	1.4056	0.00082341	1.9652	0.0011512	585.8071168561805	35.893	1.0061	35.971	35.625	36.631	0.078831					59	39	2	0	0	0	0.45794	1	5908	5908		3.2813	0.28607	1	47374			167	13383	108	109	223	223					0.020162539457487583
AFAREHGLI	9	Unmodified	_AFAREHGLI_					0	0	0		nc|ENSG00000104388|P61019-2|RAB2A;ENSG00000104388|ENST00000262646|RAB2A;ENST00000396696.1_1_8:61504408-61533325:+|nuORF;ENST00000530071.5_1_8:61496609-61533325:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF;nc|ENSG00000129472|Q8WUD1-2|RAB2B;ENST00000429861.5_1_8:61471430-61504606:+|nuORF;ENSG00000129472|ENST00000397762|RAB2B	nc|ENSG00000104388|P61019-2|RAB2A	nc|ENSG00000104388|P61019-2|RAB2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.27923583984375	2	507.279983	1012.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.992	1	85.015	84.515	85.515	0.023125								0	0	0	0.2428	1	20823	20823		10.824	0.64053	1				168	1410	109	110	224	224					0.03964295882940405
AFDASRTSF	9	Unmodified	_AFDASRTSF_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.23779296875	2	501.237981	1000.46141	-0.37094	-0.00018593	0.15829	7.934E-05	-0.21265	-0.00010659	501.2380590419154	42.615	0.78407	42.615	42.365	43.149	0					49	26	3	0	0	0	0.013066	1	8069	8069		63.227	35.599	1	203310			169	1456	110	111	225	225					-0.03880280004614178
AFDASRTSF	9	Unmodified	_AFDASRTSF_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2378234863281	2	501.237981	1000.46141	-0.21389	-0.00010721	0.15383	7.7107E-05	-0.060058	-3.0103E-05	501.23799787052155	42.488	0.43673	42.578	42.401	42.838	0.089767					36	15	3	0	0	0	0.013066	1	7921	7921		63.227	36.344	1	152750			170	1456	110	111	226	226					-0.03880280004614178
AFDLIEHYF	9	Unmodified	_AFDLIEHYF_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7796020507812	2	577.779482	1153.54441	0.31265	0.00018064	-0.03703	-2.1395E-05	0.27562	0.00015925	577.7794193154217	78.2	0.58524	78.2	78.013	78.599	0					52	19	4	0	0	0	0.0064512	3	18943	18893;18943;19002		78.149	47.513	1	641560			171	1826;493	111	112	227;228;229	228					-0.026219632766469658
AFDLIEHYF	9	Unmodified	_AFDLIEHYF_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.795654296875	2	577.779482	1153.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.689	1	78.689	78.189	79.189	0								0	0	0	0.24643	1	19063	19063		10.074	0.6908	1				172	1826;493	111	112	230	230					-0.026219632766469658
AFDLIEHYF	9	Unmodified	_AFDLIEHYF_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7794799804688	2	577.779482	1153.54441	0.53137	0.00030702	-0.092193	-5.3267E-05	0.43918	0.00025375	577.7793864888096	78.209	0.6888	78.24	77.995	78.684	0.030159					53	23	3	0	0	0	0.0032694	2	18735	18735;18792		108	68.047	1	753220			173	1826;493	111	112	231;232	231					-0.026219632766469658
AFDLSQVLF	9	Unmodified	_AFDLSQVLF_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.2767333984375	2	520.276575	1038.5386	0.43379	0.00022569	-0.061325	-3.1906E-05	0.37246	0.00019378	520.2764678097219	96.591	1.0578	96.591	96.38	97.438	0					115	49	4	0	0	0	0.0016252	2	24535	24535;24589		118.07	63.295	1	2964200			174	1337	112	113	233;234	233					0.020869382117098212
AFDLSQVLF	9	Unmodified	_AFDLSQVLF_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2767944335938	2	520.276575	1038.5386	0.40261	0.00020947	0.0012886	6.7041E-07	0.4039	0.00021014	520.2765013871306	96.658	0.67686	96.698	96.398	97.075	0.039772					104	34	4	0	0	0	0.0016252	3	24379	24338;24379;24423		118.07	63.295	1	3844600			175	1337	112	113	235;236;237	236					0.020869382117098212
AFDLSQVLF	9	Unmodified	_AFDLSQVLF_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	520.276575	1038.5386	0.35204	0.00018316	-1.3112	-0.00068218	-0.95915	-0.00049903	520.7776362092778	96.392	0.10428	96.432	96.333	96.437	0.039772	-0.079468	-0.0012945	NaN	118.07	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84464			176	1337	112	113							0.020869382117098212
AFDLTEQRY	9	Unmodified	_AFDLTEQRY_					0	0	0		ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	ENST00000530992.1_1_17:32364642-32365872:-|nuORF	ENST00000530992.1_1_17:32364642-32365872:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7774658203125	2	571.77747	1141.54039	0.15946	9.1175E-05	-0.066902	-3.8253E-05	0.092557	5.2922E-05	571.7773466091143	50.368	0.80595	50.368	50.05	50.856	0					57	28	3	0	0	0	0.0047429	1	10415	10415		83.429	49.027	1	331980			177	3303	113	114	238	238					-0.02472052770326627
AFDLTEQRY	9	Unmodified	_AFDLTEQRY_					0	0	0		ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	ENST00000530992.1_1_17:32364642-32365872:-|nuORF	ENST00000530992.1_1_17:32364642-32365872:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7774047851562	2	571.77747	1141.54039	0.26822	0.00015336	-0.30274	-0.0001731	-0.034517	-1.9736E-05	571.7772046933637	50.271	0.54558	50.344	50.152	50.697	0.07312					41	18	3	0	0	0	0.004443	1	10263	10263		93.166	58.764	1	334430			178	3303	113	114	239	239					-0.02472052770326627
AFDPTSTLL	9	Unmodified	_AFDPTSTLL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7529296875	2	482.752933	963.491313	0.18317	8.8428E-05	0.53552	0.00025852	0.71869	0.00034695	482.7529560126484	74.74	0.4333	74.74	74.527	74.961	0					32	15	3	0	0	0	0.01063	1	17850	17850		65.235	32.93	1	295480			179	4937	114	115	240	240					0.008106589407248066
AFDPTSTLL	9	Unmodified	_AFDPTSTLL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7531433105469	2	482.752933	963.491313	0.13666	6.5972E-05	0.60545	0.00029228	0.74211	0.00035825	482.7529775019019	74.711	0.48767	74.759	74.541	75.028	0.048546					35	17	3	0	0	0	0.031665	1	17666	17666		49.933	24.534	1	188690			180	4937	114	115	241	241					0.008106589407248066
AFDVAEKYL	9	Unmodified	_AFDVAEKYL_					0	0	0		ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENST00000554508.5_1_14:69367621-69387744:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2747802734375	2	528.274032	1054.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.903	1	59.903	59.403	60.403	0								0	0	0	0.099298	1	13327	13327		33.445	15.299	1				181	781	115	116	242	242					0.008426343491009902
AFDVAEKYL	9	Unmodified	_AFDVAEKYL_					0	0	0		ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENST00000554508.5_1_14:69367621-69387744:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.273193359375	2	528.274032	1054.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.933	1	59.933	59.433	60.433	0								0	0	0	0.22927	1	13336	13336		13.615	2.5004	1				182	781	115	116	243	243					0.008426343491009902
AFDVAEREF	9	Unmodified	_AFDVAEREF_					0	0	0		nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2586669921875	2	542.258914	1082.50327	0.22772	0.00012348	0.012594	6.8291E-06	0.24031	0.00013031	542.2588429640673	52.902	0.98393	52.902	52.675	53.659	0					70	38	4	0	0	0	0.0045978	2	11176	11176;11223		87.258	49.284	1	737640			183	2637	116	117	244;245	244					-0.034677243161013394
AFDVAEREF	9	Unmodified	_AFDVAEREF_					0	0	0		nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.259033203125	2	542.258914	1082.50327	0.4371	0.00023702	-0.20412	-0.00011069	0.23298	0.00012633	542.2587664672867	52.884	0.60596	52.949	52.722	53.328	0.06543					66	27	3	0	0	0	0.0034159	2	11060	11016;11060		107.1	61.079	1	688290			184	2637	116	117	246;247	247					-0.034677243161013394
AFEDVAVYF	9	Unmodified	_AFEDVAVYF_					0	0	0		ENSG00000083812|ENST00000196482|ZNF324;nc|ENSG00000240747|C9JBD0-2|KRBOX1;ENST00000463888.1_1_3:42982705-42984136:+|nuORF;ENSG00000240747|ENST00000383748|KRBOX1;ENST00000418093.2_1_3:42980387-43074030:+|nuORF	ENSG00000083812|ENST00000196482|ZNF324	ENSG00000083812|ENST00000196482|ZNF324	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2704467773438	2	530.752933	1059.49131	0.65892	0.00034972	-0.18519	-9.829E-05	0.47373	0.00025143	530.7527529144395	83.908	0.52834	83.908	83.686	84.215	0					34	17	3	0	0	0	0.083504	1	20695	20695		36.044	19.102	1	301210			185	935	117	118	248	248					-0.036053410593012813
AFEDVAVYF	9	Unmodified	_AFEDVAVYF_					0	0	0		ENSG00000083812|ENST00000196482|ZNF324;nc|ENSG00000240747|C9JBD0-2|KRBOX1;ENST00000463888.1_1_3:42982705-42984136:+|nuORF;ENSG00000240747|ENST00000383748|KRBOX1;ENST00000418093.2_1_3:42980387-43074030:+|nuORF	ENSG00000083812|ENST00000196482|ZNF324	ENSG00000083812|ENST00000196482|ZNF324	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2705078125	2	530.752933	1059.49131	0.4018	0.00021326	0.12527	6.6487E-05	0.52707	0.00027974	530.7529111118539	83.886	0.5213	83.908	83.696	84.217	0.021744					39	18	3	0	0	0	0.1182	1	20521	20521		28.487	13.905	1	344780			186	935	117	118	249	249					-0.036053410593012813
AFFIKWRRG	9	Unmodified	_AFFIKWRRG_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2900390625	2	590.840542	1179.66653	0.65779	0.00038865	-3.2327	-0.00191	-2.5749	-0.0015214	590.8384091331868	98.095	0.065948	98.095	98.071	98.137	0					5	3	2	0	0	0	0.25981	1	24974	24974		0.6015	0.076735	1	23860	+		187	10261	118	119	250	250					0.08388543316254982
AFFLFYSE	8	Unmodified	_AFFLFYSE_					0	0	0		ENST00000502313.1_1_5:77940258-77940606:-|nuORF	ENST00000502313.1_1_5:77940258-77940606:-|nuORF	ENST00000502313.1_1_5:77940258-77940606:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7894897460938	2	512.244744	1022.47493	0.3277	0.00016786	-1.517	-0.00077708	-1.1893	-0.00060922	512.243808237802	94.969	0.39539	94.969	94.779	95.175	0					32	16	3	0	0	0	0.35759	1	23990	23990		10.183	0	1	98426			188	6867	119	120	251	251					-0.03540422225387374
AFFTYSTLTEI	11	Unmodified	_AFFTYSTLTEI_					0	0	0		IPO11|p.P360S|1|0.07|ENSG00000086200|chr5:62484066-62484066|C/T|missense_variant	IPO11|p.P360S|1|0.07|ENSG00000086200|chr5:62484066-62484066|C/T|missense_variant	IPO11|p.P360S|1|0.07|ENSG00000086200|chr5:62484066-62484066|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.3263549804688	2	646.824086	1291.63362	0.26851	0.00017368	-1.0267	-0.00066412	-0.75824	-0.00049045	646.8236781722863	81.855	0.31062	81.877	81.708	82.018	0.021866					16	10	2	0	0	0	0.36299	1	19868	19868		10.8	0.64894	1	66323			189	7360	120	121	252	252					-0.0005317310774444195
AFGHSCRIHE	10	Unmodified	_AFGHSCRIHE_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7704467773438	2	578.769457	1155.52436	0.62393	0.00036111	0.93535	0.00054135	1.5593	0.00090247	578.7699285000879	97.065	0.70378	97.105	96.785	97.489	0.040855					72	34	3	0	0	0	0.43972	1	24524	24524		6.7232	0.96273	1	309310	+		190	10914	121	122	253	253					-0.04718037488214577
AFHQQNWS	8	Unmodified	_AFHQQNWS_					0	0	0			REV__ENSG00000155833|ENST00000374798|CYLC2	REV__ENSG00000155833|ENST00000374798|CYLC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7485046386719	2	509.230491	1016.44643	0.2847	0.00014498	-0.75381	-0.00038386	-0.46911	-0.00023888	509.7318957075633	52.515	0.61757	52.582	52.339	52.956	0.067173					49	24	4	0	0	0	0.53817	1	10925	10925		2.5775	0	1	185640	+		191	9737	122	123	254	254					-0.061137270819585865
AFHQQNWS	8	Unmodified	_AFHQQNWS_					0	0	0			REV__ENSG00000155833|ENST00000374798|CYLC2	REV__ENSG00000155833|ENST00000374798|CYLC2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	509.230491	1016.44643	0.15613	7.9506E-05	-0.83208	-0.00042372	-0.67595	-0.00034421	509.73185447607415	52.563	0.4761	52.563	52.337	52.813	0	-0.0093387	-2.8876E-05	NaN	2.5775	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178920	+		192	9737	122	123							-0.061137270819585865
AFHQQNWS	8	Unmodified	_AFHQQNWS_					0	0	0			REV__ENSG00000155833|ENST00000374798|CYLC2	REV__ENSG00000155833|ENST00000374798|CYLC2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.230491	1016.44643	0.2847	0.00014498	-0.75381	-0.00038386	-0.46911	-0.00023888	509.7318957075633	52.515	0.61757	52.582	52.339	52.956	0.067173	0.0093387	5.0842E-05	NaN	2.5775	49	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185640	+		193	9737	122	123							-0.061137270819585865
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8035278320312	2	589.803291	1177.59203	0.33625	0.00019832	-0.17839	-0.00010521	0.15786	9.3108E-05	589.803146280791	53.135	0.83932	53.135	52.921	53.76	0					74	33	3	0	0	0	0.020768	2	11288	11288;11345		57.722	28.64	1	444550			194	3404	123	124	255;256	255					0.010337357142361725
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8034057617188	2	589.803291	1177.59203	0.54694	0.00032259	-0.3267	-0.00019269	0.22024	0.0001299	589.8029799601433	53.079	0.55965	53.145	52.974	53.534	0.06543					69	27	4	0	0	0	0.048027	1	11158	11158		43.772	24.515	1	446160			195	3404	123	124	257	257					0.010337357142361725
AFILGSGLLSF	11	Unmodified	_AFILGSGLLSF_					0	0	0		ENST00000517448.5_1_5:154210261-154230090:-|nuORF;ENST00000423554.5_1_5:154202945-154230090:-|nuORF;nc|ENSG00000170271|Q96IV6-2|FAXDC2;ENSG00000170271|ENST00000326080|FAXDC2	ENST00000517448.5_1_5:154210261-154230090:-|nuORF	ENST00000517448.5_1_5:154210261-154230090:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8223876953125	2	562.82115	1123.62775	0.33024	0.00018586	0.48699	0.00027409	0.81722	0.00045995	562.8214384467869	101.73	0.36787	101.73	101.57	101.94	0					63	28	3	0	0	0	0.040051	1	26057	26057		60.074	41.928	1	164780			196	4381	124	125	258	258					0.07087773171247136
AFILGSGLLSF	11	Unmodified	_AFILGSGLLSF_					0	0	0		ENST00000517448.5_1_5:154210261-154230090:-|nuORF;ENST00000423554.5_1_5:154202945-154230090:-|nuORF;nc|ENSG00000170271|Q96IV6-2|FAXDC2;ENSG00000170271|ENST00000326080|FAXDC2	ENST00000517448.5_1_5:154210261-154230090:-|nuORF	ENST00000517448.5_1_5:154210261-154230090:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.8223876953125	2	562.82115	1123.62775	0.48906	0.00027525	0.29045	0.00016347	0.77951	0.00043872	562.8212799011069	101.7	0.34443	101.74	101.54	101.89	0.042656					61	28	3	0	0	0	0.049709	1	25884	25884		57.722	40.609	1	150870			197	4381	124	125	259	259					0.07087773171247136
AFIQAGIFQEF	11	Unmodified	_AFIQAGIFQEF_					0	0	0		ENSG00000113456|ENST00000382038|RAD1	ENSG00000113456|ENST00000382038|RAD1	ENSG00000113456|ENST00000382038|RAD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.8261108398438	2	635.826963	1269.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.63	1	90.664	90.164	91.164	0.034065								0	0	0	0.28961	1	22537	22537		15.739	10.442	1				198	1802	125	126	260	260					0.015339701945549677
AFIQKSNLI	9	Unmodified	_AFIQKSNLI_					0	0	0		ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant;ENSG00000167635|ENST00000443387|ZNF146	ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant	ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.749267578125	2	517.305667	1032.59678	0.21726	0.00011239	-0.42133	-0.00021796	-0.20407	-0.00010556	517.3052554477504	51.139	0.34513	51.139	50.981	51.327	0					17	11	2	0	0	0	0.23908	1	10657	10657		16.149	3.9084	1	53487			199	4219	126	127	261	261					0.08178619856994374
AFIQKSNLI	9	Unmodified	_AFIQKSNLI_					0	0	0		ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant;ENSG00000167635|ENST00000443387|ZNF146	ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant	ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7892456054688	2	517.305667	1032.59678	0.29369	0.00015193	0.053873	2.7869E-05	0.34756	0.0001798	517.3055525475022	51.064	0.24117	51.134	51.021	51.262	0.069878					11	8	2	0	0	0	0.2094	1	10486	10486		22.736	1.1993	1	60221			200	4219	126	127	262	262					0.08178619856994374
AFKFYKYF	8	Unmodified	_AFKFYKYF_					0	0	0		tr|U7STD1|U7STD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01368PE=4SV=1	tr|U7STD1|U7STD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01368PE=4SV=1	tr|U7STD1|U7STD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01368PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2994995117188	2	557.292028	1112.5695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.41	1	36.492	35.992	36.992	0.081715								0	0	0	0.38822	1	6088	6088		0.69038	0	1				201	13579	127	128	263	263					0.01772136316594697
AFKWFCFL	8	Unmodified	_AFKWFCFL_					0	0	0			REV__ENSG00000135226|ENST00000335568|UGT2B28;REV__ENSG00000213759|ENST00000446444|UGT2B11	REV__ENSG00000135226|ENST00000335568|UGT2B28	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2675170898438	2	531.267499	1060.52044	0.43892	0.00023318	0.12179	6.4702E-05	0.56071	0.00029789	531.2675923783678	96.593	0.44908	96.593	96.423	96.872	0					51	19	4	0	0	0	0.48651	1	24564	24564		14.582	0	1	442300	+		202	9197;10247	128	129	264	264					-0.007394752439950025
AFKWFCFL	8	Unmodified	_AFKWFCFL_					0	0	0			REV__ENSG00000135226|ENST00000335568|UGT2B28;REV__ENSG00000213759|ENST00000446444|UGT2B11	REV__ENSG00000135226|ENST00000335568|UGT2B28	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2676391601562	2	531.267499	1060.52044	0.5327	0.00028301	0.019504	1.0362E-05	0.5522	0.00029337	531.2674934845699	96.658	0.43339	96.698	96.483	96.917	0.039772					49	21	3	0	0	0	0.44023	1	24360	24360		20.871	20.871	1	550240	+		203	9197;10247	128	129	265	265					-0.007394752439950025
AFLCRFIF	8	Unmodified	_AFLCRFIF_					0	0	0		ENST00000474436.1_1_9:35089091-35089349:-|nuORF	ENST00000474436.1_1_9:35089091-35089349:-|nuORF	ENST00000474436.1_1_9:35089091-35089349:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.78851318359375	2	508.772948	1015.53134	0.59645	0.00030346	2.0879	0.0010623	2.6844	0.0013657	508.7740340658083	82.156	0.40943	82.156	81.954	82.364	0					22	14	2	0	0	0	0.52502	1	20152	20152		9.3474	2.6243	1	138890			204	6698	129	130	266	266					0.024199271303018577
AFLEKAADSI	10	Unmodified	_AFLEKAADSI_					0	0	0		ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7720947265625	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.32	1	44.32	43.82	44.82	0								0	0	0	0.3327	1	8598	8598		8.7454	1.4562	1				205	3326	130	131	267	267					0.025740193777892273
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2897033691406	2	499.289485	996.564418	0.64518	0.00032213	-0.10401	-5.1931E-05	0.54117	0.0002702	499.2893918878052	65.017	0.68097	65.017	64.842	65.523	0					44	24	3	0	0	0	0.012041	2	14884	14884;14934		63.961	36.332	1	339100			206	1196	131	132	268;269	268					0.06599832454003263
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.289306640625	2	499.289485	996.564418	0.48871	0.00024401	-0.14085	-7.0323E-05	0.34786	0.00017368	499.2893877326209	65.012	0.55551	65.081	64.84	65.395	0.068909					39	20	3	0	0	0	0.0045417	2	14728	14728;14775		89.401	47.561	1	252320			207	1196	131	132	270;271	270					0.06599832454003263
AFLNDSEWE	9	Unmodified	_AFLNDSEWE_					0	0	0		nc|ENSG00000149305|O95264-2|HTR3B;ENSG00000149305|ENST00000260191|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.269287109375	2	555.740554	1109.46655	0.14222	7.9035E-05	-1.6837	-0.00093567	-1.5414	-0.00085664	556.2427691023754	72.296	0.66427	72.296	71.998	72.662	0					48	22	3	0	0	0	0.20845	1	17183	17183		21.747	7.8406	1	78900			208	3398	132	133	272	272					-0.0838002093266823
AFLNDSEWE	9	Unmodified	_AFLNDSEWE_					0	0	0		nc|ENSG00000149305|O95264-2|HTR3B;ENSG00000149305|ENST00000260191|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2691650390625	2	555.740554	1109.46655	0.40071	0.00022269	-1.9984	-0.0011106	-1.5977	-0.00088792	556.2428766523482	72.331	0.65869	72.386	72.088	72.746	0.055939					46	22	3	0	0	0	0.23598	1	17056	17056		15.847	7.2539	1	79108			209	3398	132	133	273	273					-0.0838002093266823
AFLNKPDKL	9	Unmodified	_AFLNKPDKL_					0	0	0			REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1	REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3040161132812	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.297	1	80.297	79.797	80.797	0								0	0	0	0.25992	1	19554	19554		7.2892	1.0834	1		+		210	13200	133	134	274	274					0.0762661985700106
AFLRLAMM	8	Unmodified	_AFLRLAMM_					0	0	0			REV__ENST00000276410.6_1_8:42611947-42612173:-|nuORF	REV__ENST00000276410.6_1_8:42611947-42612173:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.6910095214844	2	476.758984	951.503414	-0.3447	-0.00016434	-1.5019	-0.00071603	-1.8466	-0.00088037	476.75835939738755	33.033	0.37045	33.033	32.905	33.275	0					27	14	3	0	0	0	0.35713	1	5218	5218		14.582	3.7578	1	31001	+		211	11285	134	135	275	275					0.025722808785644702
AFLRLAMM	8	Unmodified	_AFLRLAMM_					0	0	0			REV__ENST00000276410.6_1_8:42611947-42612173:-|nuORF	REV__ENST00000276410.6_1_8:42611947-42612173:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.6911315917969	2	476.758984	951.503414	-0.31059	-0.00014808	-1.5637	-0.00074551	-1.8743	-0.00089359	476.7583426335039	33.061	0.3466	33.135	32.937	33.284	0.074322					22	13	3	0	0	0	0.35759	1	5064	5064		9.3474	2.6243	1	21605	+		212	11285	134	135	276	276					0.025722808785644702
AFLSSDFLL	9	Unmodified	_AFLSSDFLL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.77093505859375	2	506.771126	1011.5277	0.26095	0.00013224	0.55746	0.0002825	0.81841	0.00041474	506.77135915988976	85.921	0.58445	85.921	85.65	86.235	0					27	23	2	0	0	0	0.25209	2	21255	21255;21309		12.532	0	1	163180			213	406	135	136	277;278	277					0.022395358374410534
AFLSSDFLL	9	Unmodified	_AFLSSDFLL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.771484375	2	506.771126	1011.5277	0.42764	0.00021672	0.13447	6.8148E-05	0.56212	0.00028487	506.7711954834865	85.916	0.65846	85.941	85.599	86.258	0.025169					31	23	2	0	0	0	0.25209	1	21071	21071		12.532	0	1	142470			214	406	135	136	279	279					0.022395358374410534
AFLSSDFLL	9	Unmodified	_AFLSSDFLL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	506.771126	1011.5277	0.26095	0.00013224	0.55746	0.0002825	0.81841	0.00041474	506.77135915988976	85.921	0.58445	85.921	85.65	86.235	0	-0.0099111	0.00018949	NaN	12.532	27	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163180			215	406	135	136							0.022395358374410534
AFLSSDFLL	9	Unmodified	_AFLSSDFLL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	506.771126	1011.5277	0.42764	0.00021672	0.13447	6.8148E-05	0.56212	0.00028487	506.7711954834865	85.916	0.65846	85.941	85.599	86.258	0.025169	0.0099111	-0.00023922	NaN	12.532	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142470			216	406	135	136							0.022395358374410534
AFLVCANDAMR	11	Unmodified	_AFLVCANDAMR_					0	0	0			REV__ENSG00000068697|ENST00000175091|LAPTM4A	REV__ENSG00000068697|ENST00000175091|LAPTM4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.20123291015625	3	404.195093	1209.56345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.048	1	53.113	52.613	53.613	0.06543								0	0	0	0.31442	1	11104	11104		9.7643	0	1		+		217	8131	136	137	280	280					-0.032950732488870926
AFLYNDQLIW	10	Unmodified	_AFLYNDQLIW_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000490178.1_1_7:6854391-6861977:-|nuORF	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8273315429688	2	641.826963	1281.63937	0.24065	0.00015446	0.46723	0.00029988	0.70788	0.00045434	641.8272028699442	90.723	0.47808	90.723	90.523	91.001	0					40	16	3	0	0	0	0.022949	1	22720	22720		65.474	35.633	1	336560			218	2193	137	138	281	281					0.009819701945616544
AFLYNDQLIW	10	Unmodified	_AFLYNDQLIW_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000490178.1_1_7:6854391-6861977:-|nuORF	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8826293945312	2	641.826963	1281.63937	-0.0591	-3.7932E-05	0.86848	0.00055742	0.80938	0.00051948	641.8274541471557	90.684	0.46185	90.72	90.532	90.994	0.035446					49	18	4	0	0	0	0.23005	1	22544	22544		49.527	29.074	1	420090			219	2193	137	138	282	282					0.009819701945616544
AFMEPRYHVRR	11	Unmodified	_AFMEPRYHVRR_					0	0	0		ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2;nc|ENSG00000187537|Q6S5H5-2|POTEG;ENSG00000222036|ENST00000547889|POTEM;ENSG00000187537|ENST00000547848|POTEG;ENSG00000183206|ENST00000358970|POTEC;nc|ENSG00000278522|A0JP26-3|POTEB3;ENSG00000198062|ENST00000343518|POTEH;ENSG00000278522|ENST00000611217|POTEB3;nc|ENSG00000198062|Q6S545-2|POTEH;nc|ENSG00000187537|Q6S5H5-4|POTEG;nc|ENSG00000278522|A0JP26-2|POTEB3	ENSG00000233917|ENST00000439682|POTEB	ENSG00000233917|ENST00000439682|POTEB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.9232177734375	3	487.922584	1460.74592	0.235	0.00011466	2.0253	0.00098819	2.2603	0.0011028	487.9235542443105	73.848	0.3235	73.897	73.719	74.042	0.048546					34	11	4	0	0	0	0.40738	1	17447	17447		2.6312	1.3016	1	255480			220	5615	138	139	283	283					0.033978222080577325
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(100)KGVFTF	0	0	1		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2678833007812	2	532.267696	1062.52084	0.49564	0.00026381	0.29327	0.0001561	0.7889	0.00041991	532.267382715161	63.028	1.3968	63.028	62.575	63.972	0					119	51	4	0	0	0	0.0040275	4	14272	14225;14272;14323;14456		103.35	74.272	1	716020			221	5667	139	140	284;285;286;287	285		320			-0.007921003148112504
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(100)KGVFTF	0	0	1		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2679443359375	2	532.267696	1062.52084	0.44178	0.00023515	0.071936	3.8289E-05	0.51372	0.00027344	532.267786863219	60.846	0.80112	60.846	60.617	61.418	0					58	28	3	0	0	0	6.2294E-05	1	13642	13642		99.755	77.019	1	536330			222	5667	139	140	288	288		320			-0.007921003148112504
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(86)KGVFTF	0	0	1		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.26806640625	2	532.267696	1062.52084	0.53307	0.00028374	0.34586	0.00018409	0.87893	0.00046783	532.2674555300941	62.904	1.4122	62.977	62.503	63.916	0.072701					137	53	4	0	0	0	0.0046402	4	14058	14058;14106;14153;14246		85.642	63.895	1	708490			223	5667	139	140	289;290;291;292	289		320			-0.007921003148112504
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(79)KGVFTF	0	0	1		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2677612304688	2	532.267696	1062.52084	0.37381	0.00019897	0.42884	0.00022826	0.80265	0.00042722	532.2678208410135	60.774	0.66348	60.847	60.605	61.268	0.073421					54	22	4	0	0	0	0.011341	1	13500	13500		78.728	56.981	1	553480			224	5667	139	140	293	293		320			-0.007921003148112504
AFMKGVFTF	9	Unmodified	_AFMKGVFTF_					0	0	0		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2706298828125	2	524.270238	1046.52592	0.50862	0.00026665	0.45462	0.00023834	0.96324	0.000505	524.2704470382504	70.288	0.73849	70.288	70.067	70.806	0					50	27	3	0	0	0	0.017949	1	16474	16474		71.922	57.341	1	321840			225	5667	139	141	294	294					0.004522035478203179
AFMKGVFTF	9	Unmodified	_AFMKGVFTF_					0	0	0		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2703857421875	2	524.270238	1046.52592	0.36538	0.00019156	0.49537	0.00025971	0.86075	0.00045127	524.2702556724682	70.149	0.48973	70.21	70.046	70.536	0.060562					38	19	3	0	0	0	0.0074933	2	16302	16302;16356		74.929	56.794	1	233730			226	5667	139	141	295;296	295					0.004522035478203179
AFMYRTIL	8	Unmodified	_AFMYRTIL_					0	0	0		ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7781982421875	2	507.775688	1013.53682	0.59738	0.00030334	4.0125	0.0020375	4.6099	0.0023408	507.7774790524781	85.051	0.59726	85.051	84.838	85.435	0					30	19	3	0	0	0	0.50159	1	20997	20997		12.532	1.4171	1	114420			227	1729	140	142	297	297					0.03059605922112496
AFPASFSSLHF	11	Unmodified	_AFPASFSSLHF_					0	0	0			REV__ENST00000511472.5_1_5:85913768-85915283:+|nuORF	REV__ENST00000511472.5_1_5:85913768-85915283:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.5354309082031	3	404.201229	1209.58186	0.41612	0.00016819	-0.50111	-0.00020255	-0.084997	-3.4356E-05	404.20087814662804	53.114	0.465	53.114	52.945	53.41	0					40	18	3	0	0	0	0.3332	1	11253	11253		14.218	2.7003	1	175170	+		228	11205	141	143	298	298					-0.014548720110269642
AFPASFSSLHF	11	Unmodified	_AFPASFSSLHF_					0	0	0			REV__ENST00000511472.5_1_5:85913768-85915283:+|nuORF	REV__ENST00000511472.5_1_5:85913768-85915283:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.5354309082031	3	404.201229	1209.58186	0.41612	0.00016819	-0.50111	-0.00020255	-0.084997	-3.4356E-05	404.20087814662804	53.114	0.465	53.114	52.945	53.41	0					40	18	3	0	0	0	0.30961	1	11253	11253		14.218	14.218	1	175170	+		229	11205	141	143	299	299					-0.014548720110269642
AFPEIFYTF	9	Unmodified	_AFPEIFYTF_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7791137695312	2	567.778951	1133.54335	0.43061	0.00024449	-0.26632	-0.00015121	0.1643	9.3283E-05	567.7787537425264	97.003	0.9237	97.003	96.515	97.438	0					134	43	4	0	0	0	0.0042542	4	24652	24607;24652;24694;24744		100.37	66.269	1	1927300			230	5224	142	144	300;301;302;303	301					-0.0180817764553467
AFPEIFYTF	9	Unmodified	_AFPEIFYTF_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7787475585938	2	567.778951	1133.54335	0.52109	0.00029586	-0.51668	-0.00029336	0.0044109	2.5044E-06	567.7791749440844	97.567	0.48604	97.567	97.461	97.947	0					41	20	3	0	0	0	0.15282	1	24787	24787		24.021	9.1823	1	132130			231	5224	142	144	304	304					-0.0180817764553467
AFPEIFYTF	9	Unmodified	_AFPEIFYTF_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7791137695312	2	567.778951	1133.54335	0.4727	0.00026839	-0.37891	-0.00021514	0.093786	5.325E-05	567.7787373797004	97.061	1.446	97.102	96.512	97.957	0.040855					184	71	4	0	0	0	0.0025191	5	24494	24448;24494;24533;24581;24622		112.59	78.491	1	1893100			232	5224	142	144	305;306;307;308;309	306					-0.0180817764553467
AFQLDQHKPFF	11	Unmodified	_AFQLDQHKPFF_					0	0	0			REV__ENST00000466556.5_1_9:131588609-131591411:-|nuORF	REV__ENST00000466556.5_1_9:131588609-131591411:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.9033508300781	3	459.903183	1376.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.947	1	54.012	53.512	54.512	0.065128								0	0	0	0.32333	1	11379	11379		6.6235	0	1		+		233	10927	143	145	310	310					0.014444638344457417
AFRKQNYLEE	10	Unmodified	_AFRKQNYLEE_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.55572509765625	3	433.222693	1296.64625	0.24857	0.00010769	-0.49134	-0.00021286	-0.24277	-0.00010517	433.2224446871911	55.542	0.78935	55.607	55.353	56.142	0.065128					61	28	4	0	0	0	0.3181	1	11951	11951		3.5871	0.95582	1	1336900			234	1579	144	146	311	311					0.009792830751393922
AFRYLAQYY	9	Unmodified	_AFRYLAQYY_					0	0	0		nc|ENSG00000094880|Q9UJX2-3|CDC23;ENSG00000094880|ENST00000394886|CDC23	nc|ENSG00000094880|Q9UJX2-3|CDC23	nc|ENSG00000094880|Q9UJX2-3|CDC23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.287109375	2	597.800749	1193.58694	0.14687	8.7799E-05	-0.20325	-0.0001215	-0.056381	-3.3705E-05	597.8007111171565	53.086	0.27857	53.086	52.975	53.254	0					15	10	2	0	0	0	0.3182	1	11273	11273		4.3292	0.38484	1	59322			235	1088	145	147	312	312					-0.0021056814839539584
AFSPVLLQF	9	Unmodified	_AFSPVLLQF_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.28936767578125	2	511.289485	1020.56442	0.28518	0.00014581	0.22598	0.00011554	0.51117	0.00026136	511.2894882402308	90.613	0.45434	90.613	90.353	90.808	0					28	16	2	0	0	0	0.026209	1	22681	22681		53.833	17.789	1	153060			236	2577	146	148	313	313					0.05495832454005267
AFSPVLLQF	9	Unmodified	_AFSPVLLQF_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2894592285156	2	511.289485	1020.56442	-0.0011613	-5.9376E-07	0.20297	0.00010377	0.2018	0.00010318	511.2894382017118	90.568	0.34712	90.602	90.449	90.796	0.034065					26	14	2	0	0	0	0.031665	2	22506	22506;22553		49.933	9.9757	1	158610			237	2577	146	148	314;315	314					0.05495832454005267
AFSTIFSFF	9	Unmodified	_AFSTIFSFF_					0	0	0		nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1;ENSG00000036565|ENST00000276373|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7653198242188	2	533.765843	1065.51713	0.43019	0.00022962	-0.23	-0.00012276	0.20019	0.00010686	533.7655696606431	100.95	0.36359	100.95	100.76	101.12	0					42	20	3	0	0	0	0.074645	1	25816	25816		37.974	5.6685	1	150820			238	520	147	149	316	316					-0.013004468170038308
AFSTIFSFF	9	Unmodified	_AFSTIFSFF_					0	0	0		nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1;ENSG00000036565|ENST00000276373|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7659912109375	2	533.765843	1065.51713	0.65851	0.00035149	-0.48957	-0.00026131	0.16894	9.0175E-05	533.7654694576217	100.93	0.39528	100.97	100.78	101.18	0.042839					46	25	3	0	0	0	0.14091	1	25639	25639		25.399	4.9457	1	99009			239	520	147	149	317	317					-0.013004468170038308
AFSWPWWY	8	Unmodified	_AFSWPWWY_					0	0	0		ENST00000599659.5_1_19:41725288-41749617:+|nuORF;nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL	ENST00000599659.5_1_19:41725288-41749617:+|nuORF	ENST00000599659.5_1_19:41725288-41749617:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7604370117188	2	571.758352	1141.50215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.099	1	38.185	37.685	38.685	0.086075								0	0	0	0.38822	1	6594	6594		0.79363	0.10326	1				240	4216	148	150	318	318					-0.06293893894348912
AFYHRYYH	8	Unmodified	_AFYHRYYH_					0	0	0		ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7704467773438	2	578.769783	1155.52501	0.54863	0.00031753	0.096486	5.5843E-05	0.64512	0.00037337	578.7697486613932	97.03	0.6936	97.03	96.745	97.438	0					68	33	3	0	0	0	0.53345	2	24682	24682;24730		5.7604	1.4312	1	297180			241	3674	149	151	319;320	319					-0.046528747768888934
AFYHRYYH	8	Unmodified	_AFYHRYYH_					0	0	0		ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7697143554688	2	578.769783	1155.52501	0.62393	0.00036111	0.37215	0.00021539	0.99608	0.0005765	578.7699285000879	97.065	0.70378	97.105	96.785	97.489	0.040855					72	34	3	0	0	0	0.53817	1	24571	24571		2.5775	0.73324	1	309310			242	3674	149	151	321	321					-0.046528747768888934
AFYWWERCN	9	Unmodified	_AFYWWERCN_					0	0	0			REV__VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	REV__VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.7736206054688	2	637.774208	1273.53386	0.2852	0.00018189	-1.0261	-0.00065443	-0.74092	-0.00047254	637.7735843694277	55.747	0.38433	55.812	55.595	55.98	0.065128					17	13	2	0	0	0	0.33978	1	11948	11948		1.4819	0	1	77792	+		243	8043	150	152	322	322					-0.09196269202698204
AFYWWERCN	9	Unmodified	_AFYWWERCN_					0	0	0			REV__VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	REV__VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	637.774208	1273.53386	0.32387	0.00020655	-1.2638	-0.00080603	-0.93994	-0.00059947	637.7735648496956	55.778	0.33963	55.778	55.608	55.948	0	-0.016961	-0.00015654	NaN	1.4819	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72158	+		244	8043	150	152							-0.09196269202698204
AFYWWERCN	9	Unmodified	_AFYWWERCN_					0	0	0			REV__VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	REV__VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	637.774208	1273.53386	0.2852	0.00018189	-1.0261	-0.00065443	-0.74092	-0.00047254	637.7735843694277	55.747	0.38433	55.812	55.595	55.98	0.065128	0.016961	0.00014665	NaN	1.4819	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77792	+		245	8043	150	152							-0.09196269202698204
AGAPLELVL	9	Unmodified	_AGAPLELVL_					0	0	0		ENST00000471461.5_1_7:72717735-72721871:-|nuORF	ENST00000471461.5_1_7:72717735-72721871:-|nuORF	ENST00000471461.5_1_7:72717735-72721871:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.7684020996094	2	441.768386	881.522219	0.43669	0.00019292	0.16557	7.3143E-05	0.60226	0.00026606	441.7685022648654	81.07	1.4037	81.093	80.82	82.223	0.023605					130	49	5	0	0	0	0.25209	1	19743	19743		12.532	0.89125	1	7997400			246	6671	151	153	323	323					0.07671857045602337
AGCPPYAF	8	Unmodified	_AGCPPYAF_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|18|1|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|18|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	413.288330078125	2	413.183632	824.352711	0.77186	0.00031892	-0.55377	-0.00022881	0.21809	9.0112E-05	413.1834247888119	92.65	0.46686	92.65	92.405	92.872	0					33	17	2	0	0	0	0.3576	1	23369	23369		0.79363	0	1	423450	+		247	12669	152	154	324	324					-0.06649162508608697
AGCPPYAF	8	Unmodified	_AGCPPYAF_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|18|1|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|18|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.2883605957031	2	413.183632	824.352711	0.37618	0.00015543	-0.014909	-6.1602E-06	0.36127	0.00014927	413.18364853107846	92.68	0.81929	92.717	92.34	93.159	0.03653					48	30	2	0	0	0	0.3576	1	23233	23233		0.79363	0	1	378890	+		248	12669	152	154	325	325					-0.06649162508608697
AGEPFTEFFSI	11	Unmodified	_AGEPFTEFFSI_					0	0	0		ENST00000568126.5_1_16:19775348-19800271:+|nuORF;ENST00000568300.6_1_16:19775348-19867867:+|nuORF;ENSG00000174628|ENST00000695302|IQCK	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8917541503906	3	415.532645	1243.5761	-0.16868	-7.0092E-05	4.4023	0.0018293	4.2337	0.0017592	415.53454535417535	33.628	0.24979	33.702	33.515	33.765	0.074322					14	9	2	0	0	0	0.31095	1	5214	5214		0.40827	0.17242	1	20371			249	4592	153	155	326	326					-0.03594015313319687
AGFFTYFVIL	10	Unmodified	_AGFFTYFVIL_					0	0	0		ENST00000466526.1_1_1:160147295-160152563:+|nuORF;nc|ENSG00000132681|Q13733-2|ATP1A4;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4	ENST00000466526.1_1_1:160147295-160152563:+|nuORF	ENST00000466526.1_1_1:160147295-160152563:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.302001953125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.212	1	40.212	39.712	40.712	0								0	0	0	0.33892	1	7357	7357		1.4819	0	1				250	2589	154	156	327	327					0.040686746595838486
AGGEDSSTPEW	11	Unmodified	_AGGEDSSTPEW_					0	0	0			REV__ENSG00000148291|ENST00000371964|SURF2	REV__ENSG00000148291|ENST00000371964|SURF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.728515625	2	568.23055	1134.44655	0.12643	7.1843E-05	-1.5617	-0.00088741	-1.4353	-0.00081556	568.2297760015595	89.806	0.81615	89.84	89.09	89.906	0.034065					39	30	2	0	0	0	0.31042	1	22287	22287		6.2058	0.97511	1	161870	+		251	9587	155	157	328	328					-0.11529816663255588
AGGLKKDSLL	10	Unmodified	_AGGLKKDSLL_					0	0	0		nc|ENSG00000157168|Q02297-9|NRG1	nc|ENSG00000157168|Q02297-9|NRG1	nc|ENSG00000157168|Q02297-9|NRG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2431335449219	2	501.303124	1000.5917	0.6112	0.0003064	-0.56511	-0.00028329	0.046085	2.3102E-05	501.3028349995691	54.864	0.40969	54.929	54.714	55.123	0.065128					24	17	2	0	0	0	0.31515	1	11621	11621		14.405	1.3629	1	76248			252	7537	156	158	329	329					0.09142315994370165
AGGSKKHSNH	10	Unmodified	_AGGSKKHSNH_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7611083984375	2	511.759946	1021.50534	0.2729	0.00013966	1.2456	0.00063746	1.5185	0.00077712	511.7606709247615	37.321	0.51897	37.321	37.156	37.675	0					30	18	2	0	0	0	0.45945	1	6516	6516		2.9952	0.41776	1	27939			253	3488	157	159	330	330					-0.004552507876269374
AGHRVAFLFP	10	Unmodified	_AGHRVAFLFP_					0	0	0		ENST00000470935.1_1_1:117603155-117605052:+|nuORF	ENST00000470935.1_1_1:117603155-117605052:+|nuORF	ENST00000470935.1_1_1:117603155-117605052:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2902221679688	2	557.811451	1113.60835	0.1004	5.6003E-05	-1.3695	-0.00076393	-1.2691	-0.00070793	557.810219943552	72.35	0.7816	72.35	72.042	72.824	0					40	26	3	0	0	0	0.31551	1	17234	17234		11.64	3.047	1	161340			254	6664	158	160	331	331					0.056088616709757844
AGIQNEMLQL	10	Unmodified	_AGIQNEMLQL_					0	0	0			REV__ENST00000456008.2_1_10:98917340-98945578:-|nuORF	REV__ENST00000456008.2_1_10:98917340-98945578:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.779296875	2	558.789524	1115.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.908	1	50.978	50.478	51.478	0.069874								0	0	0	0.32245	1	10455	10455		14.838	3.198	1		+		255	10723	159	161	332	332					0.011334643916825371
AGIWGAYLSY	10	Unmodified	_AGIWGAYLSY_					0	0	0			REV__ENST00000489485.5_1_3:170139112-170150541:+|nuORF	REV__ENST00000489485.5_1_3:170139112-170150541:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7833251953125	2	550.7742	1099.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.923	1	41.012	40.512	41.512	0.089645								0	0	0	0.33487	1	7443	7443		6.2058	0.47393	1		+		256	7987	160	162	333	333					-0.011939459310497114
AGKRPWTESPP	11	Unmodified	_AGKRPWTESPP_					0	0	0			REV__ENST00000291906.4_1_9:131482996-131483179:+|nuORF	REV__ENST00000291906.4_1_9:131482996-131483179:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.8222045898438	2	613.319837	1224.62512	-0.53725	-0.0003295	0.44715	0.00027425	-0.090098	-5.5259E-05	613.3199501998025	21.944	0.35438	21.944	21.802	22.157	0					74	33	3	0	0	0	0.41713	1	1973	1973		0.26902	0	1	43326	+		257	11319	161	163	334	334					0.021793177662630114
AGLEGPDVPL	10	Unmodified	_AGLEGPDVPL_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-5|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-5|CCDC33	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.258056640625	2	484.258382	966.502212	0.13325	6.4525E-05	-0.028496	-1.3799E-05	0.10475	5.0726E-05	484.2582245391088	55.841	0.4855	55.841	55.608	56.094	0					29	16	3	0	0	0	0.31456	1	12088	12088		14.838	3.198	1	166350	+		258	12801	162	164	335	335					0.017620613149915698
AGLEGPDVPL	10	Unmodified	_AGLEGPDVPL_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-5|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-5|CCDC33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.25811767578125	2	484.258382	966.502212	0.060452	2.9274E-05	-0.082969	-4.0179E-05	-0.022517	-1.0904E-05	484.25822471211194	55.772	0.33569	55.837	55.674	56.01	0.065128					20	11	2	0	0	0	0.37232	1	11938	11938		14.838	5.4551	1	147540	+		259	12801	162	164	336	336					0.017620613149915698
AGLEGPDVPL	10	Unmodified	_AGLEGPDVPL_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-5|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-5|CCDC33	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	484.258382	966.502212	0.060452	2.9274E-05	-0.082969	-4.0179E-05	-0.022517	-1.0904E-05	484.25822471211194	55.772	0.33569	55.837	55.674	56.01	0.065128	-0.0022718	-2.9138E-05	NaN	14.838	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147540	+		260	12801	162	164							0.017620613149915698
AGLSFTEWL	9	Unmodified	_AGLSFTEWL_					0	0	0			REV__nc|ENSG00000182511|P07332-2|FES	REV__nc|ENSG00000182511|P07332-2|FES	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2607421875	2	512.260925	1022.5073	0.58469	0.00029951	1.0379	0.0005317	1.6226	0.00083121	512.2614396096011	82.33	1.3611	82.33	81.78	83.141	0					78	47	3	0	0	0	0.22344	1	20246	20246		15.847	2.3393	1	263100	+		261	10565	163	165	337	337					-0.0030563482238221695
AGLWEAALYG	10	Unmodified	_AGLWEAALYG_					0	0	0		ENST00000472571.2_1_X:55185560-55187609:-|nuORF;ENST00000332132.8_1_X:55172668-55187609:-|nuORF;ENST00000358460.8_1_X:55172668-55187651:-|nuORF	ENST00000472571.2_1_X:55185560-55187609:-|nuORF	ENST00000472571.2_1_X:55185560-55187609:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2676391601562	2	525.766374	1049.5182	-0.42021	-0.00022093	-0.91333	-0.0004802	-1.3335	-0.00070113	525.7657905299244	16.094	0.25049	16.094	15.951	16.202	0					46	30	2	0	0	0	0.46554	1	648	648		1.8442	1.0506	1	15776			262	6060	164	166	338	338					-0.004582324480907118
AGRHNYIF	8	Unmodified	_AGRHNYIF_					0	0	0		ENSG00000144891|ENST00000349243|AGTR1	ENSG00000144891|ENST00000349243|AGTR1	ENSG00000144891|ENST00000349243|AGTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2506103515625	2	489.251226	976.487899	0.47698	0.00023336	-1.2902	-0.00063124	-0.81323	-0.00039788	489.2505853378313	98.279	0.34331	98.279	98.087	98.431	0					29	17	2	0	0	0	0.45077	1	25033	25033		19.439	0.18201	1	92723			263	3230	165	167	339	339					-0.0012854632262815358
AGSERCLRSYS	11	Unmodified	_AGSERCLRSYS_					0	0	0			REV__ENST00000583383.5_1_17:79981501-79983267:+|nuORF	REV__ENST00000583383.5_1_17:79981501-79983267:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.19671630859375	3	410.19615	1227.56662	0.50027	0.00020521	0.52513	0.00021541	1.0254	0.00042062	410.1960161868966	61.742	0.71989	61.742	61.672	62.392	0					43	29	2	0	0	0	0.28838	1	13870	13870		19.987	5.0297	1	182790	+		264	10183	166	168	340	340					-0.03806106870501935
AGSWIFSHNQR	11	Unmodified	_AGSWIFSHNQR_					0	0	0			REV__nc|ENSG00000051341|O75417-2|POLQ	REV__nc|ENSG00000051341|O75417-2|POLQ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8824462890625	3	434.882782	1301.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.718	1	92.754	92.254	93.254	0.03653								0	0	0	0.33867	1	23170	23170		1.2148	0.51716	1		+		265	8054	167	169	341	341					-0.012230481449705621
AGSWIFSHNQR	11	Unmodified	_AGSWIFSHNQR_					0	0	0			REV__nc|ENSG00000051341|O75417-2|POLQ	REV__nc|ENSG00000051341|O75417-2|POLQ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8823547363281	3	434.882782	1301.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.319	1	98.361	97.861	98.861	0.041931								0	0	0	0.33867	1	24882	24882		1.2148	0.51716	1		+		266	8054	167	169	342	342					-0.012230481449705621
AGTVWLEVL	9	Unmodified	_AGTVWLEVL_					0	0	0		GBA2|p.G490A|1|0.12|ENSG00000070610|chr9:35739741-35739741|C/G|missense_variant	GBA2|p.G490A|1|0.12|ENSG00000070610|chr9:35739741-35739741|C/G|missense_variant	GBA2|p.G490A|1|0.12|ENSG00000070610|chr9:35739741-35739741|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2791748046875	2	494.279118	986.543683	0.36533	0.00018057	0.11588	5.7279E-05	0.48121	0.00023785	494.27913196126735	83.589	0.5869	83.611	83.361	83.948	0.021744					38	20	3	0	0	0	0.30005	1	20429	20429		6.7232	0.36906	1	151340			267	7343	168	170	343	343					0.049872420743326984
AGVWAAQFEVQ	11	Unmodified	_AGVWAAQFEVQ_					0	0	0			REV__ENSG00000147100|ENST00000587091|SLC16A2	REV__ENSG00000147100|ENST00000587091|SLC16A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3375244140625	2	603.301113	1204.58767	0.65584	0.00039567	-2.4096	-0.0014537	-1.7537	-0.001058	603.2997724378986	70.898	0.5537	70.898	70.555	71.109	0					22	18	2	0	0	0	0.30965	1	16596	16596		12.241	2.8575	1	96955	+		268	9558	169	171	344	344					-0.006437734993596678
AGWNAYIDNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGWNAYIDNL_					1	0	0		ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant;CON__P02584	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7774658203125	2	589.77747	1177.54039	0.18097	0.00010673	0.21542	0.00012705	0.39639	0.00023378	589.777492218586	105.29	0.58907	105.29	105.03	105.62	0					162	61	4	0	0	0	2.9717E-05	3	27078	27078;27112;27149		124.95	92.167	1	749000		+	269	1593	170	172	345;346;347	345					-0.041280527703293046
AGWNAYIDNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGWNAYIDNL_					1	0	0		ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant;CON__P02584	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.777587890625	2	589.77747	1177.54039	0.50106	0.00029552	-0.17925	-0.00010572	0.32181	0.0001898	589.7772596158133	105.29	0.53455	105.32	105.04	105.57	0.034004					174	58	4	0	0	0	8.0733E-11	3	26959	26884;26920;26959		162.31	122.36	1	435390		+	270	1593	170	172	348;349;350	350					-0.041280527703293046
AGWRAWGA	8	Unmodified	_AGWRAWGA_					0	0	0		ENST00000438060.5_2_19:38709694-38714578:-|nuORF	ENST00000438060.5_2_19:38709694-38714578:-|nuORF	ENST00000438060.5_2_19:38709694-38714578:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.71923828125	2	437.719562	873.42457	0.018151	7.9452E-06	-0.97292	-0.00042587	-0.95477	-0.00041792	437.7191127124321	86.996	0.2697	87.023	86.882	87.151	0.027573					14	11	2	0	0	0	0.41225	1	21437	21437		24.674	0	1	152490			271	6514	171	173	351	351					-0.017204870398700223
AGYVYISFIT	10	Unmodified	_AGYVYISFIT_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3307495117188	2	567.297507	1132.58046	0.47824	0.0002713	4.1349	0.0023457	4.6131	0.002617	567.2995039949299	85.848	0.74596	85.874	85.418	86.164	0.025169					47	28	2	0	0	0	0.31288	1	21008	21008		6.7232	0	1	197180	+		272	10361	172	174	352	352					0.019474939002293468
AHALTGGLGDF	11	Unmodified	_AHALTGGLGDF_					0	0	0			REV__ENST00000570755.1_1_16:3097544-3105874:+|nuORF	REV__ENST00000570755.1_1_16:3097544-3105874:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.766845703125	2	529.766906	1057.51926	0.31012	0.00016429	-0.37384	-0.00019805	-0.063719	-3.3756E-05	529.7666432997335	51.557	0.84165	51.627	51.336	52.178	0.069874					60	30	3	0	0	0	0.39569	1	10695	10695		5.2969	0.54088	1	164940	+		273	7963	173	175	353	353					-0.007200180791642197
AHASSKELDFS	11	Unmodified	_AHASSKELDFS_					0	0	0		nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.769287109375	2	596.28566	1190.55677	0.13383	7.9798E-05	4.3159	0.0025735	4.4497	0.0026533	596.7901148445227	73.671	0.10314	73.724	73.649	73.752	0.052574					5	3	2	0	0	0	0.39744	1	17373	17373		4.897	0.95262	1	47439			274	4253	174	176	354	354					-0.030889716042338478
AHCVYPYKTD	10	Unmodified	_AHCVYPYKTD_					0	0	0			REV__ENSG00000129187|ENST00000438320|DCTD	REV__ENSG00000129187|ENST00000438320|DCTD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.276611328125	2	598.773874	1195.53319	-0.11252	-6.7374E-05	2.4498	0.0014669	2.3373	0.0013995	598.7752767393062	32.801	0.21294	32.875	32.752	32.965	0.07378					14	9	2	0	0	0	0.46827	1	4994	4994		1.3295	0.25807	1	16262	+		275	9031	175	177	355	355					-0.056751086424128516
AHDNVDRVTI	10	Unmodified	_AHDNVDRVTI_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.294189453125	2	570.293819	1138.57309	-0.1594	-9.0902E-05	0.057511	3.2798E-05	-0.10189	-5.8104E-05	570.2939514522245	30.655	2.3976	30.655	30.404	32.801	0					300	113	5	0	0	0	0.43771	2	4908	4908;5005		7.1017	0	1	1783400	+		276	10072	176	178	356;357	356					0.00934154352535188
AHDNVDRVTI	10	Unmodified	_AHDNVDRVTI_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2940063476562	2	570.293819	1138.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.906	1	32.906	32.406	33.406	0								0	0	0	0.3366	1	5160	5160		4.1895	0	1		+		277	10072	176	178	358	358					0.00934154352535188
AHDNVDRVTI	10	Unmodified	_AHDNVDRVTI_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2942504882812	2	570.293819	1138.57309	-0.10944	-6.2412E-05	0.045494	2.5945E-05	-0.063944	-3.6467E-05	570.2939224304066	30.625	1.6898	30.701	30.386	32.075	0.075403					267	87	5	0	0	0	0.44938	2	4749	4719;4749		4.897	0	1	1654200	+		278	10072	176	178	359;360	360					0.00934154352535188
AHFQGWEFF	9	Unmodified	_AHFQGWEFF_					0	0	0		ENST00000216727.8_1_14:23795141-23795348:+|nuORF	ENST00000216727.8_1_14:23795141-23795348:+|nuORF	ENST00000216727.8_1_14:23795141-23795348:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3567504882812	2	584.764166	1167.51378	0.67644	0.00039556	3.1506	0.0018424	3.8271	0.0022379	584.7659329703296	87.792	0.34512	87.792	87.603	87.948	0					19	11	2	0	0	0	0.25644	1	21866	21866		3.9444	1.3669	1	141290			279	5794	177	179	361	361					-0.06327696871016997
AHFQGWEFF	9	Unmodified	_AHFQGWEFF_					0	0	0		ENST00000216727.8_1_14:23795141-23795348:+|nuORF	ENST00000216727.8_1_14:23795141-23795348:+|nuORF	ENST00000216727.8_1_14:23795141-23795348:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	584.764166	1167.51378	0.60475	0.00035363	2.582	0.0015098	3.1867	0.0018635	584.7655736560421	87.695	0.49977	87.725	87.61	88.11	0.030037	-0.033613	-0.00026786	NaN	3.9444	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93873			280	5794	177	179							-0.06327696871016997
AHFRNLQPGS	10	Unmodified	_AHFRNLQPGS_					0	0	0		ENST00000354249.8_2_16:2030682-2031466:-|nuORF;ENST00000567471.1_1_16:2030682-2034179:-|nuORF	ENST00000354249.8_2_16:2030682-2031466:-|nuORF	ENST00000354249.8_2_16:2030682-2031466:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7771606445312	2	563.791247	1125.56794	0.29756	0.00016776	2.3468	0.0013231	2.6443	0.0014909	563.7924714732471	50.212	0.54403	50.285	50.007	50.551	0.07312					38	18	3	0	0	0	0.43972	1	10243	10243		6.7232	0.99131	1	230630			281	6111	178	180	362	362					0.010178952805517838
AHHMTVELEA	10	Unmodified	_AHHMTVELEA_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-3|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2933959960938	2	569.271498	1136.52844	-0.10232	-5.8249E-05	1.1538	0.00065684	1.0515	0.00059859	569.272031788857	31.463	0.33574	31.536	31.456	31.792	0.073782					33	16	3	0	0	0	0.46656	1	4660	4660		1.6526	1.0511	1	39174	+		282	9139	179	181	363	363					-0.03435992785148301
AHKFYWYK	8	Unmodified	_AHKFYWYK_					0	0	0			REV__ENSG00000165102|ENST00000379644|HGSNAT	REV__ENSG00000165102|ENST00000379644|HGSNAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.81201171875	2	571.792727	1141.5709	0.28795	0.00016465	3.8259	0.0021876	4.1138	0.0023522	571.7944644753625	37.645	0.42807	37.729	37.505	37.933	0.084476					26	13	3	0	0	0	0.53858	1	6423	6423		2.3027	0.65011	1	31451	+		283	10021	180	182	364	364					0.005777704053571142
AHLKRGRH	8	Unmodified	_AHLKRGRH_					0	0	0		ENST00000412341.6_1_1:249150017-249153213:-|nuORF	ENST00000412341.6_1_1:249150017-249153213:-|nuORF	ENST00000412341.6_1_1:249150017-249153213:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7908935546875	2	487.791384	973.568215	0.18303	8.9282E-05	-1.257	-0.00061316	-1.074	-0.00052388	487.7906188742125	76.791	0.81459	76.791	76.298	77.112	0					48	28	2	0	0	0	0.53771	1	18532	18532		2.8892	1.045	1	201430			284	6406	181	183	365	365					0.0803735979108069
AHPFLAGH	8	Unmodified	_AHPFLAGH_					0	0	0		ENST00000397061.3_1_19:33183408-33183504:+|nuORF	ENST00000397061.3_1_19:33183408-33183504:+|nuORF	ENST00000397061.3_1_19:33183408-33183504:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.7527770996094	2	425.221937	848.429321	0.11388	4.8425E-05	-0.37332	-0.00015874	-0.25944	-0.00011032	425.22177811017264	83.619	0.47529	83.641	83.44	83.915	0.021744					21	16	2	0	0	0	0.3576	1	20422	20422		2.8892	0	1	89503			285	6347	182	184	366	366					-0.0009560289711316727
AHWCKSRF	8	Unmodified	_AHWCKSRF_					0	0	0		ENST00000424388.1_1_3:50607184-50608690:+|nuORF	ENST00000424388.1_1_3:50607184-50608690:+|nuORF	ENST00000424388.1_1_3:50607184-50608690:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.2845458984375	2	517.753079	1033.4916	-0.11849	-6.1349E-05	-1.5559	-0.00080556	-1.6744	-0.00086691	517.7521106962174	45.597	0.82821	45.597	45.328	46.156	0					43	28	3	0	0	0	0.3576	1	8966	8966		5.2307	5.2307	1	144520			286	6461	183	185	367	367					-0.02380199820413509
AHWCKSRF	8	Unmodified	_AHWCKSRF_					0	0	0		ENST00000424388.1_1_3:50607184-50608690:+|nuORF	ENST00000424388.1_1_3:50607184-50608690:+|nuORF	ENST00000424388.1_1_3:50607184-50608690:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.2847290039062	2	517.753079	1033.4916	0.064047	3.316E-05	-1.4545	-0.00075305	-1.3904	-0.00071989	517.7523877987124	45.496	0.43884	45.582	45.475	45.914	0.085617					22	16	2	0	0	0	0.3576	1	8822	8822		5.2307	0	1	105860			287	6461	183	185	368	368					-0.02380199820413509
AIAGLAWSKI	10	Unmodified	_AIAGLAWSKI_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7821655273438	2	515.30821	1028.60187	0.40269	0.00020751	-0.2319	-0.0001195	0.1708	8.8013E-05	515.3081583056771	76.512	0.51047	76.512	76.357	76.867	0					24	17	2	0	0	0	0.31585	1	18446	18446		10.824	0	1	278230	+		288	8162	184	186	369	369					0.08870923719587154
AIAGLAWSKI	10	Unmodified	_AIAGLAWSKI_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7821044921875	2	515.30821	1028.60187	0.40694	0.0002097	-0.414	-0.00021334	-0.0070513	-3.6336E-06	515.3081595230616	76.444	0.65324	76.484	76.257	76.911	0.03923					31	23	2	0	0	0	0.31585	1	18230	18230		10.824	0	1	260940	+		289	8162	184	186	370	370					0.08870923719587154
AIAKNHRRAAS	11	Unmodified	_AIAKNHRRAAS_					0	0	0			REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF	REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8564453125	2	597.844345	1193.67414	0.12735	7.6134E-05	-2.9525	-0.0017651	-2.8252	-0.001689	597.8429078359317	89.192	0.26733	89.224	89.088	89.355	0.032265					12	9	2	0	0	0	0.37393	1	22087	22087		9.544	0.79857	1	48160	+		290	8319	185	187	371	371					0.08504650845884498
AIEDEYVQ	8	Unmodified	_AIEDEYVQ_					0	0	0		nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.74810791015625	2	483.724372	965.434192	-0.08343	-4.0357E-05	-1.5983	-0.00077313	-1.6817	-0.00081349	483.7236045871867	49.103	0.3094	49.103	48.973	49.283	0					14	10	2	0	0	0	0.35759	1	10073	10073		13.508	5.5977	1	45379			291	2391	186	188	372	372					-0.049908083356626776
AIEDEYVQ	8	Unmodified	_AIEDEYVQ_					0	0	0		nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7481384277344	2	483.724372	965.434192	-0.16526	-7.9942E-05	-1.1821	-0.0005718	-1.3473	-0.00065174	483.7238222664494	49.09	0.24747	49.167	49.035	49.282	0.076607					10	8	2	0	0	0	0.3576	1	9917	9917		8.5933	0.68312	1	32677			292	2391	186	188	373	373					-0.049908083356626776
AIERTYLS	8	Unmodified	_AIERTYLS_					0	0	0			REV__ENST00000367419.9_1_6:149911990-149912092:+|nuORF	REV__ENST00000367419.9_1_6:149911990-149912092:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1982421875	2	476.758549	951.502546	-0.83009	-0.00039575	-0.18306	-8.7274E-05	-1.0131	-0.00048303	476.7583215234069	41.953	0.50255	41.953	41.745	42.248	0					34	17	3	0	0	0	0.3576	1	7947	7947		2.0598	0	1	78828	+		293	11563	187	189	374	374					0.024854810348415413
AIIIDPNEH	9	Unmodified	_AIIIDPNEH_					0	0	0			REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2695617675781	2	511.269281	1020.52401	0.0074202	3.7937E-06	-0.40289	-0.00020598	-0.39547	-0.00020219	511.2691194176684	23.436	0.31292	23.536	23.402	23.715	0.099739					70	31	3	0	0	0	0.33849	1	2301	2301		1.6526	0	1	29484	+		294	8926	188	190	375	375					0.014568660635632114
AIINDFAKDRF	11	Unmodified	_AIINDFAKDRF_					0	0	0		FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.2378845214844	3	437.234822	1308.68264	-0.088055	-3.8501E-05	0.059453	2.5995E-05	-0.028602	-1.2506E-05	437.2347678521132	45.198	1.2257	45.286	44.879	46.105	0.08754					148	47	5	0	0	0	0.41359	1	8887	8887		1.2148	0.4383	1	455650			295	4077	189	191	376	376					0.04064159971835579
AIKCFHLY	8	Unmodified	_AIKCFHLY_					0	0	0		DPY19L2|p.R190C|1|0.24|ENSG00000177990|chr12:63661364-63661364|G/A|missense_variant	DPY19L2|p.R190C|1|0.24|ENSG00000177990|chr12:63661364-63661364|G/A|missense_variant	DPY19L2|p.R190C|1|0.24|ENSG00000177990|chr12:63661364-63661364|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2569580078125	2	497.762581	993.510608	0.50327	0.00025051	1.6323	0.00081249	2.1355	0.001063	497.76345070577594	55.449	0.36046	55.514	55.314	55.674	0.065128					17	13	3	0	0	0	0.3576	1	11806	11806		5.7604	0	1	79459			296	300	190	192	377	377					0.013593367506246068
AIKKGLFIL	9	Unmodified	_AIKKGLFIL_					0	0	0			REV__ENST00000486155.1_1_6:35928714-35992326:-|nuORF	REV__ENST00000486155.1_1_6:35928714-35992326:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.839111328125	2	501.839146	1001.66374	0.43675	0.00021918	0.0043462	2.1811E-06	0.44109	0.00022136	501.83903369497614	87.733	0.80415	87.733	87.455	88.259	0					60	29	3	0	0	0	0.25209	1	21894	21894		12.532	3.1841	1	282300	+		297	8704	191	193	378	378					0.1629727513875423
AIKRSRSLS	9	Unmodified	_AIKRSRSLS_					0	0	0		ENSG00000144711|ENST00000613206|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1	ENSG00000144711|ENST00000613206|IQSEC1	ENSG00000144711|ENST00000613206|IQSEC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7763366699219	2	509.311815	1016.60908	0.27914	0.00014217	0.21707	0.00011055	0.49621	0.00025273	509.31193423180486	88.956	0.44859	88.988	88.749	89.198	0.032265					27	17	2	0	0	0	0.24263	1	21958	21958		12.532	12.532	1	83087			298	3223	192	194	379	379					0.10143656320042282
AILRQWVP	8	Unmodified	_AILRQWVP_					0	0	0		nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7957763671875	2	491.795269	981.575986	-0.021432	-1.054E-05	1.1134	0.00054756	1.092	0.00053702	491.7956564886552	43.518	0.60598	43.607	43.267	43.873	0.088921					38	21	2	0	0	0	0.53858	1	8239	8239		2.3027	0.24298	1	65242			299	1896	193	195	380	380					0.08446074267988024
AILRQWVP	8	Unmodified	_AILRQWVP_					0	0	0		nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.79583740234375	2	491.795269	981.575986	6.742E-05	3.3157E-08	1.225	0.00060245	1.2251	0.00060249	491.79576877314275	43.904	0.57795	43.993	43.818	44.396	0.088924					35	19	3	0	0	0	0.53858	1	8355	8355		2.3027	0.24298	1	71920			300	1896	193	195	381	381					0.08446074267988024
AIMSSHYELN	10	Unmodified	_AIMSSHYELN_					0	0	0			REV__ENST00000466999.1_1_20:2640164-2640466:-|nuORF	REV__ENST00000466999.1_1_20:2640164-2640466:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7706298828125	2	582.771331	1163.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.165	1	61.238	60.738	61.738	0.073421								0	0	0	0.32595	1	13574	13574		14.405	1.8738	1		+		301	8425	194	196	382	382					-0.047114125050256916
AIPFSFIVF	9	Unmodified	_AIPFSFIVF_					0	0	0			REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.7944946289062	2	520.794404	1039.57425	0.82964	0.00043207	0.19622	0.00010219	1.0259	0.00053426	520.7943573722138	80.774	0.94825	80.774	80.485	81.434	0					58	32	2	0	0	0	0.21398	2	19685	19685;19764		16.942	4.4107	1	224540	+		302	8643	195	197	383;384	383					0.056050204593930175
AIPFSFIVF	9	Unmodified	_AIPFSFIVF_					0	0	0			REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	520.794404	1039.57425	0.82964	0.00043207	0.19622	0.00010219	1.0259	0.00053426	520.7943573722138	80.774	0.94825	80.774	80.485	81.434	0	-0.074646	-0.00033045	NaN	16.942	58	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224540	+		303	8643	195	197							0.056050204593930175
AIPQGIILSLW	11	Unmodified	_AIPQGIILSLW_					0	0	0			REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF	REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8629760742188	2	605.863349	1209.71214	0.84702	0.00051318	0.40582	0.00024587	1.2528	0.00075905	605.8630784673509	96.791	0.19105	96.831	96.726	96.917	0.039772					12	9	2	0	0	0	0.39906	1	24420	24420		4.5289	0.93237	1	85687	+		304	10651	196	198	385	385					0.11567723988014222
AIPVKLVHD	9	Unmodified	_AIPVKLVHD_					0	0	0		ENST00000484023.1_1_3:194151670-194152613:-|nuORF;nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;ATP13A3|p.I1118Kfs*22|1|0.05|ENSG00000133657|chr3:194419928-194419929|-/GCAGCTTTTCT|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ENST00000484023.1_1_3:194151670-194152613:-|nuORF	ENST00000484023.1_1_3:194151670-194152613:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.76171875	2	496.300384	990.586216	0.45083	0.00022375	-0.57687	-0.0002863	-0.12604	-6.2554E-05	496.29992865517573	38.208	0.42764	38.295	38.168	38.595	0.08688					23	15	2	0	0	0	0.25504	1	6715	6715		4.756	1.8668	1	39875			305	68	197	199	386	386					0.09054637202564209
AIRRPEQATRR	11	Unmodified	_AIRRPEQATRR_					0	0	0			REV__ENST00000597578.1_1_16:86524111-86542471:-|nuORF	REV__ENST00000597578.1_1_16:86524111-86542471:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.9325866699219	3	451.932248	1352.77491	0.68319	0.00030876	0.35138	0.0001588	1.0346	0.00046756	451.93230680483066	92.433	1.62	92.433	91.815	93.435	0					189	61	4	0	0	0	0.41047	2	23288	23288;23384		1.9275	0.33522	1	468520	+		306	12614	198	200	387;388	387					0.11263682828712263
AIVDVVANR	9	Unmodified	_AIVDVVANR_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2715148925781	2	478.779816	955.545079	-0.36774	-0.00017607	1.8716	0.00089608	1.5038	0.00072001	478.7808748256207	43.488	0.34104	43.488	43.231	43.572	0					26	11	3	0	0	0	0.080641	1	8362	8362		51.63	28.481	1	155320			307	2903	199	201	389	389					0.0655287616308442
AIVDVVANR	9	Unmodified	_AIVDVVANR_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2714538574219	2	478.779816	955.545079	-0.29939	-0.00014334	0.62189	0.00029775	0.3225	0.00015441	478.7800154112662	43.37	0.28809	43.459	43.267	43.555	0.089176					19	9	3	0	0	0	0.080641	1	8176	8176		51.63	28.894	1	113910			308	2903	199	201	390	390					0.0655287616308442
AIYLIVIGL	9	Unmodified	_AIYLIVIGL_					0	0	0		nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.8178405761719	2	487.817879	973.621205	0.1174	5.727E-05	0.069785	3.4042E-05	0.18719	9.1313E-05	487.81788417645305	102.63	0.53017	102.63	102.18	102.71	0					65	35	2	0	0	0	0.080938	1	26290	26290		45.75	9.2838	1	317720			309	3188	200	202	391	391					0.13333880010509347
AKAFNFIRET	10	Unmodified	_AKAFNFIRET_					0	0	0			REV__tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1	REV__tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8450317382812	2	598.824755	1195.63496	0.59644	0.00035716	3.4681	0.0020768	4.0645	0.0024339	598.8271664262732	85.261	0.44524	85.261	85.014	85.459	0					36	15	4	0	0	0	0.24016	1	21024	21024		29.082	9.8246	1	286030	+		310	13254	201	203	392	392					0.04496505771635384
AKFRKQERA	9	Unmodified	_AKFRKQERA_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000165462|ENST00000298231|PHOX2A	ENSG00000165462|ENST00000298231|PHOX2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330810546875	2	567.330539	1132.64652	0.13865	7.8661E-05	-0.21875	-0.0001241	-0.080096	-4.5441E-05	567.3303349058168	86.524	2.9324	86.524	85.605	88.537	0					378	115	5	0	0	0	0.27332	7	21348	21348;21389;21437;21482;21525;21568;21612		10.074	4.3421	1	7160200			311	1626	202	204	393;394;395;396;397;398;399	393					0.0855074758567298
AKFRKQERA	9	Unmodified	_AKFRKQERA_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000165462|ENST00000298231|PHOX2A	ENSG00000165462|ENST00000298231|PHOX2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.33056640625	2	567.330539	1132.64652	0.2232	0.00012663	-0.32185	-0.0001826	-0.098654	-5.5969E-05	567.330282121425	86.461	2.8884	86.489	85.666	88.554	0.027367					440	114	5	0	0	0	0.27332	7	21190	21098;21190;21237;21283;21326;21409;21453		10.074	4.3421	1	7811600			312	1626	202	204	400;401;402;403;404;405;406	401					0.0855074758567298
AKGRRIPL	8	Unmodified	_AKGRRIPL_					0	0	0		ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.8009948730469	2	455.800886	909.587219	0.063274	2.884E-05	0.006458	2.9436E-06	0.069732	3.1784E-05	455.80081772874945	109.49	0.20348	109.49	109.44	109.64	0					35	17	3	0	0	0	0.53771	1	28182	28182		2.8892	0	1	1618700			313	3614	203	205	407	407					0.12880896362139538
AKHILKLLLL	10	Unmodified	_AKHILKLLLL_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|72|2|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|72|2|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|72|2|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.406005859375	2	581.407727	1160.8009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.7	1	112.7	112.2	113.2	0								0	0	0	0.33892	1	28882	28882		1.4819	1.0236	1				314	7413	204	206	408	408					0.2269318401831697
AKIARKQLSHS	11	Unmodified	_AKIARKQLSHS_					0	0	0		ENST00000559109.2_1_15:31745531-31745762:-|nuORF	ENST00000559109.2_1_15:31745531-31745762:-|nuORF	ENST00000559109.2_1_15:31745531-31745762:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8692626953125	2	619.870028	1237.7255	0.1373	8.5111E-05	-0.7573	-0.00046943	-0.62	-0.00038432	619.8693975449752	92.491	0.62921	92.491	92.164	92.793	0					35	23	2	0	0	0	0.41422	1	23307	23307		1.0715	0.67075	1	92143			315	7143	205	207	409	409					0.11614974819940471
AKKEGKVLFNN	11	Unmodified	_AKKEGKVLFNN_					0	0	0		ENSG00000150540|ENST00000280097|HNMT	ENSG00000150540|ENST00000280097|HNMT	ENSG00000150540|ENST00000280097|HNMT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.2577514648438	2	624.358962	1246.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.701	1	53.766	53.266	54.266	0.06543								0	0	0	0.33908	1	11304	11304		1.0715	0.5467	1				316	3432	206	208	410	410					0.08988750351545605
AKLEEVKKFY	10	Unmodified	_AKLEEVKKFY_					0	0	0			REV__nc|ENSG00000170264|Q3B820|FAM161A	REV__nc|ENSG00000170264|Q3B820|FAM161A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.3009643554688	2	627.858264	1253.70197	0.34068	0.0002139	-3.1616	-0.0019851	-2.8209	-0.0017712	628.3575766349927	69.626	0.2749	69.688	69.581	69.856	0.061699					14	9	2	0	0	0	0.31838	1	16162	16162		1.4819	0.15237	1	84981	+		317	10205	207	209	411	411					0.08527116262757772
AKLKGPKL	8	Unmodified	_AKLKGPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.3138732910156	2	427.794738	853.574923	0.11329	4.8467E-05	1.5062	0.00064435	1.6195	0.00069282	427.79564333899873	112.57	0.18697	112.57	112.51	112.69	0					19	14	2	0	0	0	0.3576	1	28857	28857		0	0	1	345510			318	2279	208	210	412	412					0.14227859899096984
AKLKGPKL	8	Unmodified	_AKLKGPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	427.794738	853.574923	0.12364	5.2891E-05	1.7035	0.00072874	1.8271	0.00078164	427.7955162500704	112.82	0.062302	112.83	112.79	112.85	0.013817	0.12913	0.00010114	NaN	0	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88836			319	2279	208	210							0.14227859899096984
AKLLPLPLA	9	Unmodified	_AKLLPLPLA_					0	0	0		SIM1|p.S31L|1|0.16|ENSG00000112246|chr6:100463377-100463377|G/A|missense_variant	SIM1|p.S31L|1|0.16|ENSG00000112246|chr6:100463377-100463377|G/A|missense_variant	SIM1|p.S31L|1|0.16|ENSG00000112246|chr6:100463377-100463377|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.31646728515625	2	468.318046	934.621539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.51	1	109.51	109.01	110.01	0								0	0	0	0.29233	1	28176	28176		0.6015	0.076735	1				320	13363	209	211	413	413					0.15161299730368683
AKLPLEKPL	9	Unmodified	_AKLPLEKPL_					0	0	0			REV__ENST00000556601.5_1_2:27844560-27844656:+|nuORF	REV__ENST00000556601.5_1_2:27844560-27844656:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.80926513671875	2	504.826235	1007.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.82	1	109.83	109.33	110.33	0.017242								0	0	0	0.26267	1	28084	28084		6.7232	0	1		+		321	12462	210	212	414	414					0.13440380896463466
AKPDLAEPF	9	Unmodified	_AKPDLAEPF_					0	0	0			REV__chr3:48583780-48584035|194|22.73|0.27|6.4|-|1|COL7A1,COL7A1|1	REV__chr3:48583780-48584035|194|22.73|0.27|6.4|-|1|COL7A1,COL7A1|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7544860839844	2	494.260925	986.507297	0.54435	0.00026905	-0.38783	-0.00019169	0.15651	7.7359E-05	494.26056628722995	48.02	0.40844	48.1	47.948	48.357	0.080032					23	14	2	0	0	0	0.29576	1	9619	9619		7.2892	0.56607	1	87906	+		322	7801	211	213	415	415					0.013503651775977232
AKPLIKGK	8	Unmodified	_AKPLIKGK_					0	0	0			REV__ENSG00000155622|ENST00000286049|XAGE2	REV__ENSG00000155622|ENST00000286049|XAGE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.3138122558594	2	427.794738	853.574923	0.11328	4.8458E-05	1.3093	0.00056011	1.4226	0.00060857	427.7953394095593	112.26	0.40845	112.26	112.11	112.52	0					62	45	2	0	0	0	0.3576	1	28778	28778		0.69038	0	1	598410	+		323	9731	212	214	416	416					0.14227859899085615
AKQLREVAER	10	Unmodified	_AKQLREVAER_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8088989257812	2	600.346386	1198.67822	0.49745	0.00029864	-4.2844	-0.0025721	-3.787	-0.0022735	600.3432442847769	62.965	0.33351	62.965	62.809	63.142	0					19	13	2	0	0	0	0.28526	1	14295	14295		27.629	10.516	1	199760	+		324	9977	213	215	417	417					0.0868269554894141
AKRAAWGG	8	Unmodified	_AKRAAWGG_					0	0	0			REV__nc|ENSG00000084110|P42357-3|HAL	REV__nc|ENSG00000084110|P42357-3|HAL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.72723388671875	2	408.727387	815.44022	0.7739	0.00031632	-1.0294	-0.00042075	-0.25552	-0.00010444	408.7270082264172	93.226	0.45599	93.226	93.006	93.462	0					25	17	3	0	0	0	0.54081	1	23495	23495		0.79363	0	1	118380	+		325	8259	214	216	418	418					0.02511799477179011
AKRQSRETL	9	Unmodified	_AKRQSRETL_					0	0	0			REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.80126953125	2	544.812179	1087.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.198	1	19.294	18.794	19.794	0.095232								0	0	0	0.28807	1	1218	1218		1.4819	0.79152	1		+		326	7696	215	217	419	419					0.06950450969088706
AKRRTDLASSR	11	Unmodified	_AKRRTDLASSR_					0	0	0			REV__nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE	REV__nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.860595703125	2	630.860192	1259.70583	0.13976	8.8169E-05	0.867	0.00054695	1.0068	0.00063512	630.860460552371	90.006	1.7085	90.04	89.035	90.744	0.034065					96	67	2	0	0	0	0.40796	1	22203	22203		2.4985	0.84587	1	695210	+		327	8773	216	218	420	420					0.08636598809175666
AKRTYFTVF	9	Unmodified	_AKRTYFTVF_					0	0	0			REV__nc|ENSG00000149187|Q92879-5|CELF1	REV__nc|ENSG00000149187|Q92879-5|CELF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.799560546875	2	566.811116	1131.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.49	1	107.51	107.01	108.01	0.022224								0	0	0	0.2722	1	27539	27539		4.756	0	1		+		328	8044	217	219	421	421					0.04714022231291892
AKRYLRVA	8	Unmodified	_AKRYLRVA_					0	0	0			REV__nc|ENSG00000147162|O15294-2|OGT	REV__nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.8048400878906	2	488.806168	975.597784	-0.16026	-7.8335E-05	-3.5674	-0.0017438	-3.7277	-0.0018221	488.8050057906443	109.47	0.15393	109.47	109.38	109.53	0					26	17	2	0	0	0	0.53817	1	28168	28168		2.5775	0	1	779100	+		329	9562	218	220	422	422					0.1090087901654897
AKTDPPRAI	9	Unmodified	_AKTDPPRAI_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7796325683594	2	484.779816	967.545079	-0.29687	-0.00014392	-0.17553	-8.5094E-05	-0.4724	-0.00022901	484.7796850975178	40.069	0.4481	40.158	39.96	40.408	0.088562					25	16	2	0	0	0	0.30757	1	7189	7189		5.7319	0	1	52773	+		330	9543	219	221	423	423					0.06000876163091107
AKWLIYMYA	9	Unmodified	_AKWLIYMYA_					0	0	0			REV__nc|ENSG00000118432|P21554-2|CNR1	REV__nc|ENSG00000118432|P21554-2|CNR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.8070678710938	2	579.804445	1157.59434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.59	1	105.62	105.12	106.12	0.029739								0	0	0	0.25361	1	27023	27023		8.5933	2.3875	1		+		331	8842	220	222	424	424					0.021844481276957595
ALAAPQQEAL	10	Unmodified	_ALAAPQQEAL_					0	0	0		ENST00000521327.1_1_5:151052612-151066451:-|nuORF;ENSG00000113140|ENST00000231061|SPARC	ENST00000521327.1_1_5:151052612-151066451:-|nuORF	ENST00000521327.1_1_5:151052612-151066451:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2765808105469	2	506.277106	1010.53966	0.4676	0.00023673	-1.5903	-0.00080511	-1.1227	-0.00056838	506.2763994667056	64.562	0.83418	64.562	64.198	65.032	0					50	29	2	0	0	0	0.43214	1	14713	14713		8.1555	1.0538	1	164520			332	1787	221	223	425	425					0.034811525806162535
ALAELIDNS	9	Unmodified	_ALAELIDNS_					0	0	0		SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2349548339844	2	473.248015	944.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.495	1	25.589	25.089	26.089	0.093458								0	0	0	0.28073	1	2862	2862		2.9952	0	1				333	1266	222	224	426	426					0.007014709353370563
ALAISDHFP	9	Unmodified	_ALAISDHFP_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7637939453125	2	485.753267	969.491981	-0.05939	-2.8849E-05	0.45256	0.00021983	0.39317	0.00019098	485.7534598314807	50.984	0.49528	50.984	50.539	51.034	0					33	16	3	0	0	0	0.2796	1	10615	10615		9.3474	9.3474	1	177970			334	4243	223	225	427	427					0.0060149838041070325
ALCCTLHL	8	Unmodified	_ALCCTLHL_					0	0	0		ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2191162109375	2	437.219691	872.42483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.35	1	46.436	45.936	46.936	0.085617								0	0	0	0.36535	1	9083	9083		34.187	0	1				335	4999	224	226	428	428					-0.01648571426540002
ALDLLTEEQI	10	Unmodified	_ALDLLTEEQI_					0	0	0		ENSG00000151014|ENST00000280614|NOCT	ENSG00000151014|ENST00000280614|NOCT	ENSG00000151014|ENST00000280614|NOCT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2297973632812	2	572.808436	1143.60232	0.14312	8.1983E-05	1.1093	0.00063543	1.2525	0.00071742	572.8090744629781	51.281	0.11839	51.281	51.208	51.327	0					5	3	2	0	0	0	0.31456	1	10692	10692		14.838	0	1	25825			336	3443	225	227	429	429					0.03626253858146811
ALDMFQKH	8	Unmodified	_ALDMFQKH_					0	0	0		ENSG00000108839|ENST00000251535|ALOX12	ENSG00000108839|ENST00000251535|ALOX12	ENSG00000108839|ENST00000251535|ALOX12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.752197265625	2	495.247295	988.480036	0.55052	0.00027264	4.4508	0.0022042	5.0013	0.0024769	495.2488549305178	55.859	0.28718	55.859	55.692	55.979	0					18	9	3	0	0	0	0.53557	1	12118	12118		4.3292	0.38484	1	54231			337	1609	226	228	430	430					-0.014664416344089659
ALDQAREIA	9	Unmodified	_ALDQAREIA_					0	0	0			REV__ENSG00000165917|ENST00000298854|RAPSN	REV__ENSG00000165917|ENST00000298854|RAPSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7665100097656	2	493.766906	985.519259	-0.32676	-0.00016134	-0.41027	-0.00020258	-0.73703	-0.00036392	493.76669564393796	41.699	0.42014	41.788	41.573	41.994	0.089767					33	16	3	0	0	0	0.33704	1	7718	7718		1.8442	0	1	117270	+		338	10053	227	229	431	431					0.025919819207956607
ALDREQEKSSD	11	Unmodified	_ALDREQEKSSD_					0	0	0			REV__ENSG00000156575|ENST00000287143|PRG3	REV__ENSG00000156575|ENST00000287143|PRG3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.3030395507812	2	639.302038	1276.58952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.227	1	89.227	88.727	89.727	0								0	0	0	0.33024	1	22267	22267		4.1895	0.90819	1		+		339	9760	228	230	432	432					-0.037708092720322384
ALDRHWHSK	9	Unmodified	_ALDRHWHSK_					0	0	0		ENSG00000107187|ENST00000371748|LHX3;nc|ENSG00000107187|Q9UBR4-2|LHX3	ENSG00000107187|ENST00000371748|LHX3	ENSG00000107187|ENST00000371748|LHX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.2982177734375	2	575.299239	1148.58392	-0.074148	-4.2657E-05	-2.1297	-0.0012252	-2.2039	-0.0012679	575.2980017413968	40.228	0.38187	40.318	40.164	40.546	0.089645					23	14	2	0	0	0	0.33978	1	7234	7234		1.4819	0.28856	1	86866			340	1548	229	231	433	433					0.015576015174701752
ALEEHTYI	8	Unmodified	_ALEEHTYI_					0	0	0			REV__PAX7|p.R247H|1|0.32|ENSG00000009709|chr1:18691907-18691907|G/A|missense_variant	REV__PAX7|p.R247H|1|0.32|ENSG00000009709|chr1:18691907-18691907|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.768798828125	2	488.242732	974.470912	-0.23677	-0.0001156	-3.0137	-0.0014714	-3.2505	-0.001587	488.24311624973734	40.347	0.52797	40.437	40.215	40.743	0.089642					25	19	2	0	0	0	0.3576	1	7217	7217		2.5775	0.27475	1	18155	+		341	12951	230	232	434	434					-0.017345117191098325
ALEESPLTTFT	11	Unmodified	_ALEESPLTTFT_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.8048706054688	2	604.805894	1207.59723	0.60539	0.00036614	-1.9375	-0.0011718	-1.3321	-0.00080569	604.8046914590316	83.255	0.51167	83.276	82.987	83.499	0.021744					33	17	3	0	0	0	0.40693	1	20271	20271		2.7352	0	1	274910	+		342	10530	231	233	435	435					0.0017394999549651402
ALEFGNFQEL	10	Unmodified	_ALEFGNFQEL_					0	0	0			REV__ENST00000397254.2_1_X:43889279-43890164:+|nuORF	REV__ENST00000397254.2_1_X:43889279-43890164:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2881469726562	2	584.287671	1166.56079	0.51089	0.00029851	-0.50484	-0.00029497	0.00605	3.5349E-06	584.2873789274881	60.036	0.6659	60.108	59.911	60.577	0.072338					48	23	3	0	0	0	0.43214	1	13206	13206		8.1555	0.8663	1	419670	+		343	11729	232	234	436	436					-0.015828821105060342
ALELAVHQI	9	Unmodified	_ALELAVHQI_					0	0	0		nc|ENSG00000205810|Q07444-2|KLRC3	nc|ENSG00000205810|Q07444-2|KLRC3	nc|ENSG00000205810|Q07444-2|KLRC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.289794921875	2	497.290017	992.565481	0.27982	0.00013915	-0.079223	-3.9397E-05	0.2006	9.9755E-05	497.2898926150443	36.179	0.51379	36.261	36.023	36.536	0.081711					36	20	2	0	0	0	0.32112	1	6075	6075		3.9444	0	1	57472			344	7592	233	235	437	437					0.06890046822900331
ALFESMRALC	10	Unmodified	_ALFESMRALC_					0	0	0		ENST00000474550.5_1_2:101601378-101601966:+|nuORF	ENST00000474550.5_1_2:101601378-101601966:+|nuORF	ENST00000474550.5_1_2:101601378-101601966:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7810668945312	2	570.780644	1139.54674	0.074802	4.2695E-05	-0.13699	-7.8193E-05	-0.062191	-3.5498E-05	570.7805739151441	35.459	0.61353	35.459	35.062	35.675	0					43	21	3	0	0	0	0.46083	1	5974	5974		2.7352	0.23671	1	82874			345	6700	234	236	438	438					-0.01745574134815797
ALFESMRALC	10	Unmodified	_ALFESMRALC_					0	0	0		ENST00000474550.5_1_2:101601378-101601966:+|nuORF	ENST00000474550.5_1_2:101601378-101601966:+|nuORF	ENST00000474550.5_1_2:101601378-101601966:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7948608398438	2	570.780644	1139.54674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.746	1	35.746	35.246	36.246	0								0	0	0	0.33784	1	6011	6011		2.7352	0.43246	1				346	6700	234	236	439	439					-0.01745574134815797
ALGGLWEPG	9	Unmodified	_ALGGLWEPG_					0	0	0		nc|ENSG00000108823|Q16586-2|SGCA;ENSG00000108823|ENST00000262018|SGCA;ENST00000502555.5_1_17:48244836-48246708:+|nuORF	nc|ENSG00000108823|Q16586-2|SGCA	nc|ENSG00000108823|Q16586-2|SGCA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2343444824219	2	450.23471	898.454868	0.45521	0.00020495	-0.65644	-0.00029555	-0.20123	-9.0601E-05	450.234277393083	76.745	0.64502	76.745	76.467	77.112	0					26	22	2	0	0	0	0.24263	1	18542	18542		12.532	12.532	1	84896			347	1608	235	237	440	440					0.001578268346634104
ALGGLWEPG	9	Unmodified	_ALGGLWEPG_					0	0	0		nc|ENSG00000108823|Q16586-2|SGCA;ENSG00000108823|ENST00000262018|SGCA;ENST00000502555.5_1_17:48244836-48246708:+|nuORF	nc|ENSG00000108823|Q16586-2|SGCA	nc|ENSG00000108823|Q16586-2|SGCA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	450.23471	898.454868	0.2742	0.00012345	-0.66678	-0.00030021	-0.39258	-0.00017675	450.23418177499775	76.725	0.57071	76.764	76.498	77.069	0.03923	0.0094867	-4.2986E-06	NaN	12.532	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68826			348	1608	235	237							0.001578268346634104
ALGKIRCFGF	10	Unmodified	_ALGKIRCFGF_					0	0	0		nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4	nc|ENSG00000144130|Q86YG4|NT5DC4	nc|ENSG00000144130|Q86YG4|NT5DC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3087158203125	2	556.307687	1110.60082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.508	1	84.532	84.032	85.032	0.023125								0	0	0	0.33395	1	20674	20674		7.2892	2.0586	1				349	3198	236	238	441	441					0.04994386079033575
ALHRCLFCPF	10	Unmodified	_ALHRCLFCPF_					0	0	0		ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.8004760742188	2	603.799171	1205.58379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.728	1	84.728	84.228	85.228	0								0	0	0	0.33877	1	20901	20901		1.6526	0	1				350	4107	237	239	442	442					-0.010778577983955984
ALHSLMCFSK	10	Unmodified	_ALHSLMCFSK_					0	0	0			REV__ENSG00000229676|ENST00000456783|ZNF492	REV__ENSG00000229676|ENST00000456783|ZNF492	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2724609375	2	568.783187	1135.55182	-0.37196	-0.00021157	-1.0532	-0.00059904	-1.4252	-0.00081061	568.7824579444846	41.283	0.51398	41.373	41.153	41.667	0.089767					50	19	4	0	0	0	0.46746	1	7625	7625		1.4819	1.4819	1	297280	+		351	10852	238	240	443	443					-0.010532702722002796
ALIAQLTPF	9	Unmodified	_ALIAQLTPF_					0	0	0			REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2889709472656	2	487.289485	972.564418	-0.19604	-9.5527E-05	-0.30351	-0.0001479	-0.49955	-0.00024342	487.2893032406496	58.912	0.87616	58.912	58.682	59.558	0					73	32	3	0	0	0	0.22344	1	13067	13067		15.847	0	1	864850	+		352	8138	239	241	444	444					0.0770383245398989
ALIAQLTPF	9	Unmodified	_ALIAQLTPF_					0	0	0			REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2892761230469	2	487.289485	972.564418	0.024779	1.2074E-05	-0.3198	-0.00015583	-0.29502	-0.00014376	487.28927355000314	58.811	0.89124	58.881	58.627	59.518	0.070477					67	33	3	0	0	0	0.091044	1	12860	12860		34.402	0.29928	1	985720	+		353	8138	239	241	445	445					0.0770383245398989
ALLERQRRRQ	10	Unmodified	_ALLERQRRRQ_					0	0	0			REV__ENSG00000135622|ENST00000357877|SEMA4F	REV__ENSG00000135622|ENST00000357877|SEMA4F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.6009521484375	3	442.600609	1324.78	0.4234	0.0001874	0.89803	0.00039747	1.3214	0.00058487	442.60091325524456	98.386	0.6369	98.428	98.168	98.805	0.041939					85	33	3	0	0	0	0.4676	1	24881	24881		1.4551	0.52958	1	375050	+		354	9211	240	242	446	446					0.13059986691337144
ALLERQRRRQ	10	Unmodified	_ALLERQRRRQ_					0	0	0			REV__ENSG00000135622|ENST00000357877|SEMA4F	REV__ENSG00000135622|ENST00000357877|SEMA4F	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	442.600609	1324.78	0.69195	0.00030626	0.68074	0.0003013	1.3727	0.00060756	442.60079350920125	98.427	0.68469	98.427	98.137	98.822	0	-0.00065829	-9.594E-05	NaN	1.4551	100	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379500	+		355	9211	240	242							0.13059986691337144
ALLIFEPRS	9	Unmodified	_ALLIFEPRS_					0	0	0			REV__nc|ENSG00000170324|Q68DX3-3|FRMPD2	REV__nc|ENSG00000170324|Q68DX3-3|FRMPD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3038330078125	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.38	1	94.38	93.88	94.88	0								0	0	0	0.27613	1	23836	23836		3.9444	0	1		+		356	10208	241	243	447	447					0.0762661985700106
ALLSASFGGFL	11	Unmodified	_ALLSASFGGFL_					0	0	0			REV__ENST00000487651.5_1_7:100457471-100457768:+|nuORF	REV__ENST00000487651.5_1_7:100457471-100457768:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7971801757812	2	541.797675	1081.5808	0.2307	0.00012499	0.22824	0.00012366	0.45894	0.00024865	541.7975393803258	72.71	0.75172	72.766	72.43	73.182	0.055931					52	25	4	0	0	0	0.39569	1	17147	17147		5.2969	0.39987	1	240210	+		357	12130	242	244	448	448					0.043269136200933644
ALLTGSLLIL	10	Unmodified	_ALLTGSLLIL_					0	0	0		tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.3355712890625	2	507.333893	1012.65323	0.23231	0.00011786	2.1222	0.0010767	2.3545	0.0011945	507.8366410497774	109.81	0.11846	109.83	109.76	109.87	0.017235					24	15	2	0	0	0	0.46656	1	28073	28073		1.6526	0.85899	1	1171500			358	13478	243	245	449	449					0.14741247693677906
ALLTRLLPLRR	11	Unmodified	_ALLTRLLPLRR_					0	0	0		nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2970886230469	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.719	1	44.719	44.219	45.219	0								0	0	0	0.34185	1	8717	8717		0.094841	0	1				359	7553	244	246	450	450					0.22417277055819795
ALLTRLLPLRR	11	Unmodified	_ALLTRLLPLRR_					0	0	0		nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2970886230469	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.029	1	45.029	44.529	45.529	0								0	0	0	0.34185	1	8811	8811		0.094841	0	1				360	7553	244	246	451	451					0.22417277055819795
ALLTRLLPLRR	11	Unmodified	_ALLTRLLPLRR_					0	0	0		nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2974548339844	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.769	1	39.857	39.357	40.357	0.088562								0	0	0	0.34185	1	7097	7097		0.094841	0	1				361	7553	244	246	452	452					0.22417277055819795
ALPALLLRRL	10	Unmodified	_ALPALLLRRL_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3868408203125	2	568.387326	1134.7601	0.23811	0.00013534	-0.37854	-0.00021515	-0.14043	-7.9818E-05	568.3869947684638	109.17	0.30081	109.19	109.06	109.36	0.019402					63	40	2	0	0	0	0.46656	1	27909	27909		1.6526	1.1279	1	802350			362	2502	245	247	453	453					0.19810842698711895
ALPALLLRRL	10	Unmodified	_ALPALLLRRL_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.386474609375	2	568.387326	1134.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.45	1	109.47	108.97	109.97	0.019402								0	0	0	0.33877	1	27990	27990		1.6526	0.17072	1				363	2502	245	247	454	454					0.19810842698711895
ALPDQSFLW	9	Unmodified	_ALPDQSFLW_					0	0	0		ENST00000507841.5_1_5:1632852-1634017:-|nuORF;nc|ENSG00000249915|O75340-3|PDCD6;ENST00000507505.5_1_5:1599907-1634017:-|nuORF;ENST00000507290.5_1_5:1632852-1634017:-|nuORF;ENST00000515587.1_1_5:271739-272994:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000507841.5_1_5:1632852-1634017:-|nuORF	ENST00000507841.5_1_5:1632852-1634017:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7738647460938	2	538.7742	1075.53385	0.69948	0.00037686	-0.095532	-5.147E-05	0.60395	0.00032539	538.7737520516318	83.956	0.52834	83.956	83.686	84.215	0					41	17	3	0	0	0	0.0081278	1	20703	20703		72.968	42.331	1	480720			364	5681	246	248	455	455					-0.0008994593106308457
ALPDQSFLW	9	Unmodified	_ALPDQSFLW_					0	0	0		ENST00000507841.5_1_5:1632852-1634017:-|nuORF;nc|ENSG00000249915|O75340-3|PDCD6;ENST00000507505.5_1_5:1599907-1634017:-|nuORF;ENST00000507290.5_1_5:1632852-1634017:-|nuORF;ENST00000515587.1_1_5:271739-272994:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000507841.5_1_5:1632852-1634017:-|nuORF	ENST00000507841.5_1_5:1632852-1634017:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7739868164062	2	538.7742	1075.53385	0.5134	0.00027661	0.052454	2.8261E-05	0.56586	0.00030487	538.7738353433637	83.956	0.5424	83.978	83.723	84.266	0.021744					44	19	3	0	0	0	0.0021834	3	20523	20479;20523;20575		114.65	59.876	1	368950			365	5681	246	248	456;457;458	457					-0.0008994593106308457
ALPEFTSIF	9	Unmodified	_ALPEFTSIF_					0	0	0		PIBF1-KLF5|1|fusion;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	PIBF1-KLF5|1|fusion	PIBF1-KLF5|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.272705078125	2	512.771126	1023.5277	0.18224	9.345E-05	0.13365	6.8532E-05	0.3159	0.00016198	512.7712048166726	89.584	0.18183	89.616	89.542	89.724	0.032265					8	6	2	0	0	0	0.23216	1	22247	22247		14.838	0	1	39960			366	1318	247	249	459	459					0.016875358374363714
ALPFVLLMA	9	Unmodified	_ALPFVLLMA_					0	0	0		ENSG00000147873|ENST00000610521|IFNA5	ENSG00000147873|ENST00000610521|IFNA5	ENSG00000147873|ENST00000610521|IFNA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7906494140625	2	487.790807	973.56706	0.39004	0.00019026	0.18389	8.9699E-05	0.57393	0.00027996	487.79074642799384	81.158	0.47659	81.182	81	81.477	0.023605					25	16	2	0	0	0	0.33356	1	19700	19700		2.3027	0	1	163060			367	3346	248	250	460	460					0.07921964587308139
ALPSKLPTF	9	Unmodified	_ALPSKLPTF_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2892761230469	2	487.289485	972.564418	-0.19604	-9.5527E-05	-0.30351	-0.0001479	-0.49955	-0.00024342	487.2893032406496	58.912	0.87616	58.912	58.682	59.558	0					73	32	3	0	0	0	0.10543	2	13018	13018;13127		31.268	2.7815	1	864850			368	2142	249	251	461;462	461					0.0770383245398989
ALPSQFVVP	9	Unmodified	_ALPSQFVVP_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2731628417969	2	479.273835	956.533118	0.029138	1.3965E-05	-1.0385	-0.00049771	-1.0093	-0.00048374	479.27316712030665	94.513	0.76975	94.551	94.272	95.042	0.038086					66	31	3	0	0	0	0.2796	1	23744	23744		9.3474	0.75416	1	245340			369	3657	250	252	463	463					0.0531125941990922
ALPYFWEHF	9	Unmodified	_ALPYFWEHF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.290283203125	2	605.290017	1208.56548	0.53571	0.00032426	0.13756	8.3261E-05	0.67327	0.00040752	605.2900328636123	78.495	1.5058	78.495	78.176	79.682	0					90	51	2	0	0	0	0.032194	4	19015	18969;19015;19059;19130		64.236	55.491	1	1913700			370	5695	251	253	464;465;466;467	465					-0.03045953177092997
ALPYFWEHF	9	Unmodified	_ALPYFWEHF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.2904052734375	2	605.290017	1208.56548	0.74313	0.00044981	0.81407	0.00049275	1.5572	0.00094256	605.289873378415	78.461	2.1747	78.491	78.051	80.226	0.030159					151	76	3	0	0	0	0.032194	3	18847	18800;18847;18902		64.236	50.33	1	2420100			371	5695	251	253	468;469;470	469					-0.03045953177092997
ALQDSVWGSW	10	Unmodified	_ALQDSVWGSW_					0	0	0		ENST00000371432.7_1_6:45517039-45517156:+|nuORF	ENST00000371432.7_1_6:45517039-45517156:+|nuORF	ENST00000371432.7_1_6:45517039-45517156:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2686157226562	2	574.772188	1147.52982	0.43629	0.00025077	-1.1066	-0.00063605	-0.67031	-0.00038528	574.7706510704309	64.249	0.48597	64.32	64.174	64.66	0.071014					20	17	2	0	0	0	0.31803	1	14547	14547		3.2813	0	1	70636			372	6209	252	254	471	471					-0.03804035424764152
ALQKFYRGEF	10	Unmodified	_ALQKFYRGEF_					0	0	0		nc|ENSG00000152620|Q4G0N4-3|NADK2;nc|ENSG00000152620|Q4G0N4-2|NADK2;ENSG00000152620|ENST00000381937|NADK2	nc|ENSG00000152620|Q4G0N4-3|NADK2	nc|ENSG00000152620|Q4G0N4-3|NADK2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.21685791015625	3	420.224146	1257.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.308	1	46.308	45.808	46.808	0								0	0	0	0.33378	1	9199	9199		7.4771	0.37534	1				373	3501	253	255	472	472					0.032087922887058085
ALQRPILW	8	Unmodified	_ALQRPILW_					0	0	0			REV__ENST00000367145.3_1_1:205633820-205633997:-|nuORF	REV__ENST00000367145.3_1_1:205633820-205633997:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2800598144531	2	498.803094	995.591636	0.19603	9.7778E-05	1.6078	0.00080197	1.8038	0.00089975	498.80374634352347	48.755	0.93506	48.832	48.468	49.404	0.076607					58	32	3	0	0	0	0.3576	1	9740	9740		6.3541	0.59368	1	138520	+		374	11556	254	256	473	473					0.09366360785031702
ALRENILF	8	Unmodified	_ALRENILF_					0	0	0		ENSG00000156110|ENST00000539909|ADK;nc|ENSG00000156110|P55263-3|ADK	ENSG00000156110|ENST00000539909|ADK	ENSG00000156110|ENST00000539909|ADK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.9230041503906	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.474	1	63.545	63.045	64.045	0.071018								0	0	0	0.3836	1	14277	14277		21.747	1.293	1				375	3611	255	257	474	474					0.0666206416847217
ALRRTHCVP	9	Unmodified	_ALRRTHCVP_					0	0	0		ENST00000515578.5_1_4:420284-429666:-|nuORF	ENST00000515578.5_1_4:420284-429666:-|nuORF	ENST00000515578.5_1_4:420284-429666:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7267456054688	2	526.792735	1051.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.762	1	30.762	30.262	31.262	0								0	0	0	0.29233	1	4522	4522		0.6015	0	1				376	6937	256	258	475	475					0.04719447133720678
ALSLQYRYCW	10	Unmodified	_ALSLQYRYCW_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8823547363281	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.79	1	102.83	102.33	103.33	0.040916								0	0	0	0.33952	1	26229	26229		0.77653	0.27058	1				377	4067	257	259	476	476					-0.016068539630396117
ALSSNKLVKF	10	Unmodified	_ALSSNKLVKF_					0	0	0			REV__ENST00000567329.1_1_16:8996189-8998378:-|nuORF	REV__ENST00000567329.1_1_16:8996189-8998378:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.830078125	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.482	1	83.482	82.982	83.982	0								0	0	0	0.33599	1	20523	20523		4.897	0.95262	1		+		378	10738	258	260	477	477					0.10094577919812764
ALSTRLVRSFV	11	Unmodified	_ALSTRLVRSFV_					0	0	0			REV__ENST00000477741.5_1_20:57562773-57565044:+|nuORF	REV__ENST00000477741.5_1_20:57562773-57565044:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8736572265625	2	624.874779	1247.73501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.45	1	103.49	102.99	103.99	0.03791								0	0	0	0.33436	1	26421	26421		2.7352	1.2533	1		+		379	8413	259	261	478	478					0.1210474310544214
ALTDYHLGLRT	11	Unmodified	_ALTDYHLGLRT_					0	0	0			REV__ENST00000556641.5_1_14:99959014-99967243:+|nuORF	REV__ENST00000556641.5_1_14:99959014-99967243:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.341552734375	2	630.340769	1258.66699	0.074556	4.6996E-05	-0.083849	-5.2853E-05	-0.0092925	-5.8574E-06	630.340765158879	46.024	0.41985	46.109	45.885	46.304	0.085617					33	15	3	0	0	0	0.40055	1	8948	8948		4.1895	1.691	1	117230	+		380	8299	260	262	479	479					0.04799873454794579
ALTEVLFHF	9	Unmodified	_ALTEVLFHF_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2681274414062	2	538.792392	1075.57023	0.31375	0.00016905	-0.137	-7.3813E-05	0.17675	9.5233E-05	538.7922908803532	78.495	0.46686	78.495	78.238	78.705	0					21	15	2	0	0	0	0.164	1	19010	19010		30.225	13.283	1	143160			381	3413	261	263	480	480					0.035469309656718906
ALTEVLFHF	9	Unmodified	_ALTEVLFHF_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2371826171875	2	538.792392	1075.57023	0.59357	0.00031981	0.24039	0.00012952	0.83396	0.00044933	538.7925598474818	78.459	0.39836	78.489	78.286	78.684	0.030159					20	13	2	0	0	0	0.091303	1	18808	18808		44.407	21.259	1	120880			382	3413	261	263	481	481					0.035469309656718906
ALTRPIKIEKV	11	Unmodified	_ALTRPIKIEKV_					0	0	0			REV__ENST00000381596.1_1_20:1586507-1600590:-|nuORF	REV__ENST00000381596.1_1_20:1586507-1600590:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8197631835938	2	634.408455	1266.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.199	1	93.236	92.736	93.736	0.037369								0	0	0	0.33873	1	23317	23317		1.1933	0	1		+		383	11674	262	264	482	482					0.1796277331636702
ALTVYFFM	8	Unmodified	_ALTVYFFM_					0	0	0			REV__ENSG00000196944|ENST00000366473|OR2T4	REV__ENSG00000196944|ENST00000366473|OR2T4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.74346923828125	2	496.251514	990.488476	-0.014478	-7.1848E-06	-0.22246	-0.00011039	-0.23693	-0.00011758	496.25133857808567	28.708	0.8386	28.708	28.512	29.351	0					85	45	3	0	0	0	0.53771	1	4002	4002		2.8892	1.2366	1	222230	+		384	10838	263	265	483	483					-0.007148877177883151
ALVIFEMTN	9	Unmodified	_ALVIFEMTN_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.3234252929688	2	519.270435	1036.52632	0.16361	8.4959E-05	1.3971	0.00072545	1.5607	0.00081041	519.2710107761361	73.782	0.51241	73.782	73.464	73.977	0					21	17	2	0	0	0	0.21515	1	17598	17598		13.508	0.97634	1	123670			385	3011	264	266	484	484					0.009515784770428581
ALVIFEMTN	9	Unmodified	_ALVIFEMTN_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.32373046875	2	519.270435	1036.52632	0.33899	0.00017603	2.2429	0.0011647	2.5819	0.0013407	519.2716171997058	73.802	0.39603	73.854	73.57	73.966	0.052567					20	14	2	0	0	0	0.237	1	17388	17388		14.582	2.0501	1	105050			386	3011	264	266	485	485					0.009515784770428581
ALVLYIRK	8	Unmodified	_ALVLYIRK_					0	0	0		ENSG00000088543|ENST00000357203|C3orf18	ENSG00000088543|ENST00000357203|C3orf18	ENSG00000088543|ENST00000357203|C3orf18	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.3189697265625	2	488.32112	974.627687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.09	1	103.13	102.63	103.63	0.040916								0	0	0	0.38822	1	26321	26321		6.3541	3.4649	1				387	1012	265	267	486	486					0.13935817961908015
ALVRLQKKIRP	11	Unmodified	_ALVRLQKKIRP_					0	0	0			REV__nc|ENSG00000270379|A2RTY3-3|HEATR9	REV__nc|ENSG00000270379|A2RTY3-3|HEATR9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2978210449219	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.98	1	115.98	115.48	116.48	0								0	0	0	0.34185	1	29553	29553		0.094841	0.011491	1		+		388	11126	266	268	487	487					0.22417277055842533
ALWKNEGFFL	10	Unmodified	_ALWKNEGFFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.5688171386719	3	408.885241	1223.63389	-0.16873	-6.899E-05	-0.29864	-0.00012211	-0.46737	-0.0001911	408.88524549217146	33.844	0.60126	33.919	33.515	34.116	0.074322					59	25	3	0	0	0	0.31829	1	5248	5248		2.086	0.17963	1	39072			389	733	267	269	488	488					0.031022914027744264
ALYIASGLTGF	11	Unmodified	_ALYIASGLTGF_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2964477539062	2	556.802957	1111.59136	0.65776	0.00036624	0.12821	7.1389E-05	0.78597	0.00043763	556.8028870509914	74.387	0.55959	74.436	74.257	74.816	0.048546					28	19	2	0	0	0	0.31042	1	17645	17645		6.2058	0	1	232320			390	4991	268	270	489	489					0.040028962745282115
ALYIEHSHTH	10	Unmodified	_ALYIEHSHTH_					0	0	0		ENST00000587829.5_1_19:37815142-37838149:+|nuORF	ENST00000587829.5_1_19:37815142-37838149:+|nuORF	ENST00000587829.5_1_19:37815142-37838149:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7989501953125	2	604.296362	1206.57817	0.6419	0.0003879	1.2522	0.00075669	1.8941	0.0011446	604.7985083624347	104.38	0.1385	104.42	104.4	104.54	0.034004					19	11	2	0	0	0	0.44496	1	26700	26700		5.7319	0.43497	1	93802			391	7246	269	271	490	490					-0.016855417848546494
AMAKYMALIK	10	Unmodified	_AMAKYMALIK_					0	0	0		nc|ENSG00000145555|Q9HD67-3|MYO10;ENSG00000145555|ENST00000513610|MYO10	nc|ENSG00000145555|Q9HD67-3|MYO10	nc|ENSG00000145555|Q9HD67-3|MYO10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.308837890625	2	570.319405	1138.62426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.888	1	54.953	54.453	55.453	0.065128								0	0	0	0.33443	1	11667	11667		6.7232	0.96273	1				392	3251	270	272	491	491					0.06049063801356169
AMCHFFFEP	9	Unmodified	_AMCHFFFEP_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7341918945312	2	564.735706	1127.45686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.813	1	29.888	29.388	30.388	0.075403								0	0	0	0.29233	1	4120	4120		0.6015	0.076735	1		+		393	8130	271	273	492	492					-0.10177203743387508
AMCVPSSF	8	Unmodified	_AMCVPSSF_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1873779296875	2	421.182774	840.350996	0.38756	0.00016323	-3.3775	-0.0014225	-2.9899	-0.0012593	421.1789469245037	81.147	0.63177	81.17	80.94	81.571	0.023605					53	22	4	0	0	0	0.44023	1	19641	19641		20.871	6.2895	1	334940	+		394	8777	272	274	493	493					-0.07556539588858868
AMKKGVTVP	9	Unmodified	_AMKKGVTVP_					0	0	0			REV__ENST00000581139.1_1_18:2946096-2946618:-|nuORF	REV__ENST00000581139.1_1_18:2946096-2946618:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7774353027344	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.039	1	77.039	76.539	77.539	0								0	0	0	0.27613	1	18559	18559		3.9444	0.3479	1		+		395	12550	273	275	494	494					0.06923605922122533
AMKRRHFF	8	Unmodified	_AMKRRHFF_					0	0	0			REV__ENST00000609263.1_1_1:165619003-165619255:+|nuORF	REV__ENST00000609263.1_1_1:165619003-165619255:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7985229492188	2	546.79782	1091.58109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.012	1	24.112	23.612	24.612	0.099739								0	0	0	0.38822	1	2443	2443		0.69038	0.088878	1		+		396	12645	274	276	495	495					0.03896054858955722
AMNMLHELQ	9	Unmodified	_AMNMLHELQ_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7571411132812	2	543.757169	1085.49979	-0.0050192	-2.7292E-06	0.18919	0.00010288	0.18418	0.00010015	543.7571261154109	43.252	0.36887	43.342	43.138	43.507	0.089764					25	12	3	0	0	0	0.20358	1	8152	8152		18.146	4.2403	1	129750			397	7607	275	277	496	496					-0.03954433685976255
AMRYKLKKFVN	11	Unmodified	_AMRYKLKKFVN_					0	0	0		sp|P03192|BMRF2_EBVB9ProteinBMRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF2PE=1SV=1	sp|P03192|BMRF2_EBVB9ProteinBMRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF2PE=1SV=1	sp|P03192|BMRF2_EBVB9ProteinBMRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF2PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.60784912109375	3	466.607713	1396.80131	0.32666	0.00015242	0.50262	0.00023453	0.82929	0.00038695	466.6078757902278	92.901	0.71872	92.939	92.671	93.39	0.037369					71	29	3	0	0	0	0.41359	1	23222	23222		1.2148	0.10508	1	276130			398	13382	276	278	497	497					0.11878235675862925
AMSDFSFLRG	10	Unmodified	_AMSDFSFLRG_					0	0	0			REV__ENSG00000050030|ENST00000055682|NEXMIF	REV__ENSG00000050030|ENST00000055682|NEXMIF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7669677734375	2	565.768591	1129.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.303	1	58.303	57.803	58.803	0								0	0	0	0.32902	1	12840	12840		13.042	1.5478	1		+		399	8049	277	279	498	498					-0.036950912968677585
AMSRSASKRR	10	Unmodified	_AMSRSASKRR_					0	0	0		ENSG00000156299|ENST00000541036|TIAM1;ENST00000469412.5_1_21:32585686-32624433:-|nuORF;nc|ENSG00000156299|Q13009-2|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7250366210938	2	575.317106	1148.61966	0.33674	0.00019373	1.4734	0.00084766	1.8101	0.0010414	575.3179194945184	53.515	0.13412	53.515	53.469	53.603	0					6	4	2	0	0	0	0.31691	1	11369	11369		7.2892	0	1	40697			400	3617	278	280	499	499					0.05129315702833992
AMVTAGLCHDI	11	Unmodified	_AMVTAGLCHDI_					0	0	0		ENSG00000133256|ENST00000496514|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B;nc|ENSG00000133256|P35913-3|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2891235351562	2	565.770277	1129.526	0.51865	0.00029344	-1.9691	-0.0011141	-1.4504	-0.00082062	566.2711256445749	97.862	0.13416	97.903	97.848	97.982	0.040848					8	5	2	0	0	0	0.31083	1	24753	24753		2.7352	0.23671	1	31010			401	2622	279	281	500	500					-0.0335816451449773
AMWFRTYM	8	Unmodified	_AMWFRTYM_					0	0	0		ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2509765625	2	553.251523	1104.48849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.822	1	22.822	22.322	23.322	0								0	0	0	0.38822	1	2239	2239		0.79363	0.19213	1				402	4237	280	282	501	501					-0.05957210989436135
ANAYTIPSHF	10	Unmodified	_ANAYTIPSHF_					0	0	0		STPG1|p.D119H|1|0.21|ENSG00000001460|chr1:24379760-24379760|C/G|missense_variant	STPG1|p.D119H|1|0.21|ENSG00000001460|chr1:24379760-24379760|C/G|missense_variant	STPG1|p.D119H|1|0.21|ENSG00000001460|chr1:24379760-24379760|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7656860351562	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.281	1	40.281	39.781	40.781	0								0	0	0	0.3327	1	7378	7378		8.7454	1.6437	1				403	13402	281	283	502	502					-0.020077315621620073
ANDLHLSDV	9	Unmodified	_ANDLHLSDV_					0	0	0		C6|p.K330N|1|0.08|ENSG00000039537|chr5:41176653-41176653|T/G|missense_variant	C6|p.K330N|1|0.08|ENSG00000039537|chr5:41176653-41176653|T/G|missense_variant	C6|p.K330N|1|0.08|ENSG00000039537|chr5:41176653-41176653|T/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.70709228515625	2	492.243264	982.471974	-0.067627	-3.3289E-05	0.19817	9.7549E-05	0.13055	6.426E-05	492.2435797506511	32.64	0.36965	32.64	32.487	32.856	0					24	18	2	0	0	0	0.25174	1	5062	5062		7.2892	0	1	22712			404	97	282	284	503	503					-0.019962973501719716
ANFSPMEDGI	10	Unmodified	_ANFSPMEDGI_					0	0	0		SORCS3|p.I875M|1|0.09|ENSG00000156395|chr10:105217013-105217013|C/G|missense_variant	SORCS3|p.I875M|1|0.09|ENSG00000156395|chr10:105217013-105217013|C/G|missense_variant	SORCS3|p.I875M|1|0.09|ENSG00000156395|chr10:105217013-105217013|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7362060546875	2	540.736957	1079.45936	0.10318	5.5791E-05	-2.5046	-0.0013543	-2.4014	-0.0012985	540.7355332261141	86.671	0.45779	86.671	86.438	86.895	0					26	17	2	0	0	0	0.24016	1	21544	21544		29.082	13.234	1	365220			405	13377	283	285	504	504					-0.0771907680473305
ANITPFPD	8	Unmodified	_ANITPFPD_					0	0	0		ENST00000257868.9_1_12:56143541-56143886:+|nuORF	ENST00000257868.9_1_12:56143541-56143886:+|nuORF	ENST00000257868.9_1_12:56143541-56143886:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.71929931640625	2	437.718893	873.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.077	1	87.077	86.577	87.577	0								0	0	0	0.3858	1	21619	21619		18.135	0	1				406	5852	284	286	505	505					-0.018541659192806037
ANPWDGKSL	9	Unmodified	_ANPWDGKSL_					0	0	0		ENST00000492217.1_1_1:19634582-19638531:-|nuORF;ENSG00000053371|ENST00000235835|AKR7A2	ENST00000492217.1_1_1:19634582-19638531:-|nuORF	ENST00000492217.1_1_1:19634582-19638531:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.24908447265625	2	494.248349	986.482145	0.39828	0.00019685	0.17151	8.4768E-05	0.56979	0.00028162	494.2483909621348	37.469	0.56076	37.469	37.25	37.811	0					30	19	2	0	0	0	0.32375	1	6555	6555		3.5965	0	1	41997			407	594	285	287	506	506					-0.011636896249456186
ANQNMGFVCLL	11	Unmodified	_ANQNMGFVCLL_					0	0	0		ENST00000430767.8_1_17:75211123-75211297:+|nuORF	ENST00000430767.8_1_17:75211123-75211297:+|nuORF	ENST00000430767.8_1_17:75211123-75211297:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.3186645507812	2	605.291376	1208.5682	0.76613	0.00046373	-2.0754	-0.0012562	-1.3092	-0.00079246	605.7926668737883	91.96	0.61601	91.96	91.763	92.379	0					32	22	2	0	0	0	0.3105	1	23086	23086		5.7319	0	1	129800			408	6488	286	288	507	507					-0.02774189106094127
ANQSASYPM	9	Unmodified	_ANQSASYPM_					0	0	0			REV__ENST00000424881.5_3_7:99170993-99171023:+|nuORF	REV__ENST00000424881.5_3_7:99170993-99171023:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2535095214844	2	484.710742	967.406931	-0.62695	-0.00030389	-1.5372	-0.00074512	-2.1642	-0.001049	484.70982885641627	41.893	0.45006	41.983	41.736	42.186	0.089767					35	17	3	0	0	0	0.20194	1	7745	7745		24.021	1.2843	1	154980	+		409	11826	287	289	508	508					-0.07807615147692104
ANRGSSHAH	9	Unmodified	_ANRGSSHAH_					0	0	0			REV__ENST00000523304.1_1_8:67526092-67526455:-|nuORF	REV__ENST00000523304.1_1_8:67526092-67526455:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.722900390625	2	468.723364	935.432175	0.59021	0.00027665	-0.78995	-0.00037027	-0.19974	-9.3623E-05	468.7230404394937	84.163	0.46843	84.163	83.841	84.309	0					50	19	4	0	0	0	0.33849	1	20769	20769		1.6526	0.85899	1	1350400	+		410	12306	288	290	509	509					-0.03812379510259234
ANTLIQQLN	9	Unmodified	_ANTLIQQLN_					0	0	0			REV__ENST00000498612.1_1_19:54622012-54631467:+|nuORF	REV__ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.78253173828125	2	507.782556	1013.55056	0.10882	5.5255E-05	-0.064545	-3.2775E-05	0.044271	2.248E-05	507.7824441969102	39.004	0.60463	39.004	38.802	39.407	0					51	22	3	0	0	0	0.30757	1	7039	7039		5.7319	0.43497	1	209610	+		411	8548	289	291	510	510					0.044325549548943854
ANVFPLNSDF	10	Unmodified	_ANVFPLNSDF_					0	0	0		ENSG00000196437|ENST00000316950|ZNF569	ENSG00000196437|ENST00000316950|ZNF569	ENSG00000196437|ENST00000316950|ZNF569	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7337036132812	2	562.274564	1122.53457	0.24512	0.00013782	-1.6006	-0.00089999	-1.3555	-0.00076217	563.2752495637974	59.922	0.50288	59.995	59.779	60.282	0.072338					36	18	3	0	0	0	0.31712	1	13237	13237		6.7232	0	1	91513			412	5221	290	292	511	511					-0.021791512820072967
ANVFPLNSDF	10	Unmodified	_ANVFPLNSDF_					0	0	0		ENSG00000196437|ENST00000316950|ZNF569	ENSG00000196437|ENST00000316950|ZNF569	ENSG00000196437|ENST00000316950|ZNF569	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.274564	1122.53457	0.45618	0.0002565	-1.2577	-0.00070715	-0.80147	-0.00045065	562.2745994460649	60.052	0.40041	60.052	59.81	60.211	0	0.028741	0.0001506	NaN	6.7232	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74997			413	5221	290	292							-0.021791512820072967
ANWMRYVVI	9	Unmodified	_ANWMRYVVI_					0	0	0		nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11;ENSG00000019485|ENST00000683152|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8429565429688	2	576.305144	1150.59573	0.33415	0.00019257	-1.093	-0.00062991	-0.75885	-0.00043733	576.3044149154827	86.338	0.44749	86.363	86.138	86.586	0.025169					24	16	2	0	0	0	0.25174	1	21218	21218		3.9444	0	1	99965			414	470	291	293	512	512					0.02646082216438117
ANYNVAIIDW	10	Unmodified	_ANYNVAIIDW_					0	0	0			REV__ENSG00000265817|ENST00000481490|FSBP	REV__ENSG00000265817|ENST00000481490|FSBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2908935546875	2	589.795663	1177.57677	0.88369	0.0005212	0.61095	0.00036034	1.4946	0.00088153	589.7950794402947	84.449	0.47088	84.449	84.367	84.838	0					63	30	3	0	0	0	0.19399	1	20807	20807		34.402	5.9072	1	1129500	+		415	11119	292	294	513	513					-0.004911758736170668
APAAAEPKL	9	Unmodified	_APAAAEPKL_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.7799072265625	2	434.25036	866.486168	-0.099414	-4.3171E-05	-0.15055	-6.5378E-05	-0.24997	-0.00010855	434.2501466187146	33.968	0.57826	34.044	33.846	34.425	0.076244					44	23	3	0	0	0	0.16392	1	5347	5347		32.786	7.3864	1	75431			416	5273	293	295	514	514					0.04758399868762808
APAAAEPKL	9	Unmodified	_APAAAEPKL_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	434.25036	866.486168	0.15049	6.5351E-05	-0.42449	-0.00018434	-0.274	-0.00011899	434.25002850509617	34.028	0.51262	34.028	33.883	34.395	0	-0.0082244	-9.1863E-05	NaN	32.786	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92383			417	5273	293	295							0.04758399868762808
APAEDPVFTIL	11	Unmodified	_APAEDPVFTIL_					0	0	0		ENST00000592605.1_1_19:1478547-1479204:-|nuORF;ENSG00000119559|ENST00000585675|C19orf25;ENST00000589421.1_1_19:1478470-1478902:-|nuORF;nc|nan|Q9UFG5-2|C19orf25	ENST00000592605.1_1_19:1478547-1479204:-|nuORF	ENST00000592605.1_1_19:1478547-1479204:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8150024414062	2	586.813522	1171.61249	0.34808	0.00020426	1.2262	0.00071955	1.5743	0.00092381	586.8143045355126	86.411	0.61297	86.411	86.125	86.738	0					62	22	4	0	0	0	0.091297	2	21395	21395;21449		47.594	22.195	1	1019800			418	2074	294	296	515;516	515					0.033548615833979056
APAEDPVFTIL	11	Unmodified	_APAEDPVFTIL_					0	0	0		ENST00000592605.1_1_19:1478547-1479204:-|nuORF;ENSG00000119559|ENST00000585675|C19orf25;ENST00000589421.1_1_19:1478470-1478902:-|nuORF;nc|nan|Q9UFG5-2|C19orf25	ENST00000592605.1_1_19:1478547-1479204:-|nuORF	ENST00000592605.1_1_19:1478547-1479204:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.8148193359375	2	586.813522	1171.61249	0.64928	0.00038101	1.0056	0.00059011	1.6549	0.00097111	586.8141426782914	86.377	0.74533	86.402	86.035	86.78	0.025169					70	30	4	0	0	0	0.091297	2	21231	21231;21274		47.594	23.574	1	1140200			419	2074	294	296	517;518	517					0.033548615833979056
APAPAEKTPV	10	Unmodified	_APAPAEKTPV_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7738952636719	2	490.7742	979.533846	-0.15956	-7.8306E-05	-0.056483	-2.772E-05	-0.21604	-0.00010603	490.7740682082845	28.861	0.44459	28.861	28.676	29.12	0					58	24	3	0	0	0	0.36006	2	3978	3940;3978		16.149	7.4037	1	70318			420	4276	295	297	519;520	520					0.04326054068951635
APAPAEKTPV	10	Unmodified	_APAPAEKTPV_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.774169921875	2	490.7742	979.533846	-0.15041	-7.3815E-05	-0.10224	-5.0175E-05	-0.25264	-0.00012399	490.7740844318593	28.797	0.37261	28.875	28.682	29.054	0.078289					57	23	3	0	0	0	0.35104	2	3834	3799;3834		17.113	7.7298	1	61687			421	4276	295	297	521;522	522					0.04326054068951635
APAPESITL	9	Unmodified	_APAPESITL_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.7475280761719	2	449.74765	897.480748	0.087228	3.923E-05	-0.30788	-0.00013847	-0.22065	-9.9238E-05	449.74737450774694	58.934	0.50163	59.004	58.721	59.222	0.070477					29	19	2	0	0	0	0.23216	1	12910	12910		14.838	4.0143	1	146150			422	133	296	298	523	523					0.027906762862812684
APAPKAYVL	9	Unmodified	_APAPKAYVL_					0	0	0		ENSG00000184207|ENST00000333503|PGP	ENSG00000184207|ENST00000333503|PGP	ENSG00000184207|ENST00000333503|PGP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2760009765625	2	465.276378	928.538203	-0.15331	-7.1332E-05	0.045728	2.1276E-05	-0.10758	-5.0056E-05	465.2761559104394	43.225	0.45831	43.225	43.063	43.521	0					34	15	3	0	0	0	0.18364	1	8279	8279		20.454	2.3186	1	104230			423	4964	297	299	524	524					0.07107563282522733
APAPKAYVL	9	Unmodified	_APAPKAYVL_					0	0	0		ENSG00000184207|ENST00000333503|PGP	ENSG00000184207|ENST00000333503|PGP	ENSG00000184207|ENST00000333503|PGP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	465.276378	928.538203	-0.27752	-0.00012913	0.63374	0.00029487	0.35622	0.00016574	465.27636553419376	43.113	0.38214	43.202	42.98	43.362	0.089767	-0.011232	0.00032297	NaN	20.454	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82827			424	4964	297	299							0.07107563282522733
APDAKSFVL	9	Unmodified	_APDAKSFVL_					0	0	0		ENST00000425542.5_1_22:38072875-38075753:+|nuORF;ENSG00000100097|ENST00000215909|LGALS1	ENST00000425542.5_1_22:38072875-38075753:+|nuORF	ENST00000425542.5_1_22:38072875-38075753:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2623596191406	2	474.263468	946.512382	-0.079103	-3.7516E-05	-0.67246	-0.00031892	-0.75157	-0.00035644	474.26280199796196	52.27	0.98412	52.27	51.937	52.921	0					74	34	4	0	0	0	0.029591	3	11011	10965;11011;11058		51.415	22.334	1	365660			425	1158	298	300	525;526;527	526					0.03698669040238656
APDAKSFVL	9	Unmodified	_APDAKSFVL_					0	0	0		ENST00000425542.5_1_22:38072875-38075753:+|nuORF;ENSG00000100097|ENST00000215909|LGALS1	ENST00000425542.5_1_22:38072875-38075753:+|nuORF	ENST00000425542.5_1_22:38072875-38075753:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2625732421875	2	474.263468	946.512382	-0.014299	-6.7815E-06	-0.47216	-0.00022393	-0.48645	-0.00023071	474.2626987434767	52.233	0.66745	52.3	51.997	52.665	0.067173					72	25	4	0	0	0	0.018465	3	10853	10853;10889;10897		59.368	23.241	1	273900			426	1158	298	300	528;529;530	528					0.03698669040238656
APDAVYTEL	9	Unmodified	_APDAVYTEL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7423095703125	2	489.742565	977.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.877	1	59.877	59.377	60.377	0								0	0	0	0.24643	1	13319	13319		10.074	0.6908	1				427	1032	299	301	531	531					-0.019059314389664905
APDAVYTEL	9	Unmodified	_APDAVYTEL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.74273681640625	2	489.742565	977.470577	0.10478	5.1318E-05	-0.084316	-4.1293E-05	0.020468	1.0024E-05	489.74259128683434	59.821	0.45932	59.894	59.695	60.154	0.072338					24	17	2	0	0	0	0.24021	1	13167	13167		13.906	4.5229	1	67642			428	1032	299	301	532	532					-0.019059314389664905
APDGKSYLL	9	Unmodified	_APDGKSYLL_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2605895996094	2	482.260925	962.507297	-0.46527	-0.00022438	-0.075152	-3.6243E-05	-0.54042	-0.00026062	482.26077658917796	45.53	0.66938	45.53	45.205	45.874	0					53	22	3	0	0	0	0.22083	1	8970	8970		16.149	6.0752	1	166940			429	3526	300	302	533	533					0.02454365177618456
APDGKSYLL	9	Unmodified	_APDGKSYLL_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2608337402344	2	482.260925	962.507297	-0.21342	-0.00010293	0.087306	4.2104E-05	-0.12612	-6.0821E-05	482.26077828556254	45.39	0.54287	45.477	45.211	45.754	0.087543					48	20	3	0	0	0	0.19307	1	8799	8799		19.362	9.288	1	152240			430	3526	300	302	534	534					0.02454365177618456
APDKDYFL	8	Unmodified	_APDKDYFL_					0	0	0		DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant	DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7398681640625	2	484.739825	967.465098	-0.08898	-4.3132E-05	0.53264	0.00025819	0.44366	0.00021506	484.73979504879446	50.636	0.51839	50.636	50.404	50.922	0					26	17	2	0	0	0	0.52476	1	10536	10536		9.3831	0.78985	1	101390			431	305	301	303	535	535					-0.01993610230761078
APDKDYFL	8	Unmodified	_APDKDYFL_					0	0	0		DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant	DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.73974609375	2	484.739825	967.465098	0.024037	1.1652E-05	0.26464	0.00012828	0.28868	0.00013993	484.7397327854881	50.592	0.41024	50.666	50.385	50.795	0.07312					24	14	2	0	0	0	0.49148	2	10346	10336;10346		13.906	2.2658	1	67566			432	305	301	303	536;537	537					-0.01993610230761078
APDKDYFL	8	Unmodified	_APDKDYFL_					0	0	0		DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant	DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.739825	967.465098	-0.08898	-4.3132E-05	0.53264	0.00025819	0.44366	0.00021506	484.73979504879446	50.636	0.51839	50.636	50.404	50.922	0	-0.014831	0.00010485	NaN	13.906	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101390			433	305	301	303							-0.01993610230761078
APEEHPTLL	9	Unmodified	_APEEHPTLL_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ACTC1|p.R97G|1|0.38|ENSG00000159251|chr15:34793410-34793410|G/C|missense_variant	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7639465332031	2	503.763832	1005.51311	-0.32267	-0.00016255	0.43011	0.00021668	0.10744	5.4124E-05	503.7640334539407	42.926	1.2613	42.926	42.626	43.887	0					111	44	4	0	0	0	2.3187E-06	3	8161	8161;8203;8249		156.16	116.21	1	1647400			434	1566	302	304	538;539;540	538					0.010574636892783928
APEEHPTLL	9	Unmodified	_APEEHPTLL_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ACTC1|p.R97G|1|0.38|ENSG00000159251|chr15:34793410-34793410|G/C|missense_variant	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	503.763832	1005.51311	-0.18393	-9.2656E-05	0.46091	0.00023219	0.27698	0.00013953	503.76401795379337	42.833	0.93179	42.923	42.65	43.582	0.089764	-0.0014891	1.1893E-05	NaN	156.16	102	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1410100			435	1566	302	304							0.010574636892783928
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.774658203125	2	502.7742	1003.53385	0.13541	6.8082E-05	-0.06806	-3.4219E-05	0.067351	3.3863E-05	502.77454572204573	46.571	6.0589	46.571	45.902	51.961	0					514	224	6	0	0	0	8.2367E-09	15	9393	9217;9261;9298;9343;9393;9439;9482;9523;9572;9616;9721;9895;9956;10008;10198		161.89	104.42	1	184710000			436	827;5239	303	305	541;542;543;544;545;546;547;548;549;550;551;552;553;554;555	545					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.7745666503906	2	502.7742	1003.53385	0.13828	6.9524E-05	-0.091828	-4.6169E-05	0.046453	2.3355E-05	502.7745383045743	46.467	4.6506	46.553	46.103	50.754	0.085621					466	183	6	0	0	0	4.1078E-06	13	9136	9058;9100;9136;9176;9221;9264;9308;9467;9520;9563;9744;9907;10081		154.46	96.992	1	165640000			437	827;5239	303	305	556;557;558;559;560;561;562;563;564;565;566;567;568	558					0.032220540689422705
APEEKAVTL	9	Unmodified	_APEEKAVTL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2664489746094	2	479.266207	956.517862	-0.063296	-3.0336E-05	0.28289	0.00013558	0.21959	0.00010524	479.266497953535	36.246	0.29287	36.328	36.209	36.502	0.081711					20	11	2	0	0	0	0.29334	1	6048	6048		7.609	1.8771	1	26472			438	5270	304	306	569	569					0.03786347832055981
APEELRAPGS	10	Unmodified	_APEELRAPGS_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2708740234375	2	513.764363	1025.51417	0.21047	0.00010813	1.4562	0.00074815	1.6667	0.00085628	513.7646592291143	46.553	0.64581	46.553	46.321	46.967	0					65	35	2	0	0	0	0.30844	1	9290	9290		19.362	1.2156	1	903040			439	3115	305	307	570	570					0.0024367805817746557
APEELRAPGS	10	Unmodified	_APEELRAPGS_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7651977539062	2	513.764363	1025.51417	0.18945	9.7332E-05	1.7198	0.00088357	1.9093	0.00098091	513.764606157535	46.475	0.63508	46.561	46.304	46.94	0.085617					85	36	3	0	0	0	0.33926	1	9089	9089		18.373	1.2602	1	1084400			440	3115	305	307	571	571					0.0024367805817746557
APEENLLPC	9	Carbamidomethyl (C)	_APEENLLPC(Carbamidomethyl (C))_	APEENLLPC(1)		APEENLLPC(59)		0	1	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.74755859375	2	521.747324	1041.4801	0.17988	9.3852E-05	-0.21573	-0.00011256	-0.035847	-1.8703E-05	521.746967403918	46.557	0.43858	46.557	46.42	46.858	0					38	28	2	0	0	0	0.01943	1	9274	9274		58.679	24.277	1	605040			441	7437	306	308	572	572	14				-0.038984864250551254
APEERPAAL	9	Unmodified	_APEERPAAL_					0	0	0		ENST00000498244.1_1_11:2930522-2930941:+|nuORF;ENSG00000110628|ENST00000649076|SLC22A18	ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENST00000498244.1_1_11:2930522-2930941:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2559814453125	2	477.256174	952.497795	-0.37269	-0.00017787	0.28628	0.00013663	-0.08641	-4.124E-05	477.2562177379356	31.907	0.92529	31.907	31.622	32.548	0					98	37	4	0	0	0	0.005983	3	4858	4817;4858;4904		79.596	31.848	1	547000			442	1673	307	309	573;574;575	574					0.01964596892071313
APEERPAAL	9	Unmodified	_APEERPAAL_					0	0	0		ENST00000498244.1_1_11:2930522-2930941:+|nuORF;ENSG00000110628|ENST00000649076|SLC22A18	ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENST00000498244.1_1_11:2930522-2930941:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2559814453125	2	477.256174	952.497795	-0.34181	-0.00016313	0.13645	6.5124E-05	-0.20535	-9.8006E-05	477.2561867170997	31.838	0.85689	31.912	31.697	32.554	0.07378					103	41	5	0	0	0	0.005983	3	4729	4682;4729;4774		79.596	39.647	1	451940			443	1673	307	309	576;577;578	577					0.01964596892071313
APEFLESLEP	10	Unmodified	_APEFLESLEP_					0	0	0		ENST00000483574.6_1_1:153748462-153750656:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF;nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3	ENST00000483574.6_1_1:153748462-153750656:+|nuORF	ENST00000483574.6_1_1:153748462-153750656:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2808837890625	2	566.282054	1130.54956	-0.11268	-6.3809E-05	-1.2515	-0.00070868	-1.3641	-0.00077249	566.2808081929143	25.764	0.37929	25.856	25.651	26.03	0.091507					51	30	3	0	0	0	0.46746	1	2965	2965		1.4819	0	1	20730			444	3169	308	310	579	579					-0.010497042046836214
APEHKEPTL	9	Unmodified	_APEHKEPTL_					0	0	0		TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant;ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant	TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2688293457031	2	511.269281	1020.52401	-0.23734	-0.00012134	-0.27535	-0.00014078	-0.51269	-0.00026212	511.26921575304175	23.663	0.34651	23.663	23.516	23.862	0					66	30	4	0	0	0	0.32831	1	2462	2462		2.9952	1.151	1	35662			445	4575	309	311	580	580					0.0145686606357458
APELESKESVL	11	Unmodified	_APELESKESVL_					0	0	0		nc|ENSG00000115902|P43007-2|SLC1A4;ENSG00000115902|ENST00000234256|SLC1A4	nc|ENSG00000115902|P43007-2|SLC1A4	nc|ENSG00000115902|P43007-2|SLC1A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3191528320312	2	601.319168	1200.62378	0.024617	1.4803E-05	0.3038	0.00018268	0.32842	0.00019748	601.3193311838241	45.873	0.50902	45.873	45.647	46.156	0					37	17	3	0	0	0	0.11456	1	9067	9067		43.477	30.945	1	176820			446	1927	310	312	581	581					0.03149638886861794
APELESKESVL	11	Unmodified	_APELESKESVL_					0	0	0		nc|ENSG00000115902|P43007-2|SLC1A4;ENSG00000115902|ENST00000234256|SLC1A4	nc|ENSG00000115902|P43007-2|SLC1A4	nc|ENSG00000115902|P43007-2|SLC1A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3192138671875	2	601.319168	1200.62378	0.16679	0.00010029	0.077122	4.6375E-05	0.24391	0.00014667	601.3192509423834	45.747	0.40235	45.832	45.701	46.103	0.085617					38	16	3	0	0	0	0.1845	2	8911	8911;8961		32.616	23.233	1	141780			447	1927	310	312	582;583	582					0.03149638886861794
APEREGSPAL	10	Unmodified	_APEREGSPAL_					0	0	0			REV__ENST00000372491.3_1_9:131940446-131940530:-|nuORF	REV__ENST00000372491.3_1_9:131940446-131940530:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7659912109375	2	513.764363	1025.51417	0.21047	0.00010813	1.4562	0.00074815	1.6667	0.00085628	513.7646592291143	46.553	0.64581	46.553	46.321	46.967	0					65	35	2	0	0	0	0.37637	1	9248	9248		14.405	0.79051	1	903040	+		448	11609	311	313	584	584					0.0024367805817746557
APEREGSPAL	10	Unmodified	_APEREGSPAL_					0	0	0			REV__ENST00000372491.3_1_9:131940446-131940530:-|nuORF	REV__ENST00000372491.3_1_9:131940446-131940530:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7646484375	2	513.764363	1025.51417	0.18945	9.7332E-05	1.7198	0.00088357	1.9093	0.00098091	513.764606157535	46.475	0.63508	46.561	46.304	46.94	0.085617					85	36	3	0	0	0	0.22118	1	9127	9127		31.268	0.6318	1	1084400	+		449	11609	311	313	585	585					0.0024367805817746557
APERTILHTT	10	Unmodified	_APERTILHTT_					0	0	0			REV__ENST00000305963.2_1_X:135044472-135044568:-|nuORF	REV__ENST00000305963.2_1_X:135044472-135044568:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.8143920898438	2	569.814387	1137.61422	0.26495	0.00015097	-0.20659	-0.00011772	0.058365	3.3257E-05	569.814264222997	37.834	0.31365	37.834	37.675	37.988	0					15	10	2	0	0	0	0.46827	1	6637	6637		1.3295	0	1	25166	+		450	11357	312	314	586	586					0.050919153919721793
APFFPDCAL	9	Unmodified	_APFFPDCAL_					0	0	0		ENSG00000182103|ENST00000329203|FAM181B	ENSG00000182103|ENST00000329203|FAM181B	ENSG00000182103|ENST00000329203|FAM181B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.731201171875	2	490.730946	979.447339	0.47358	0.0002324	0.21479	0.0001054	0.68837	0.0003378	490.7309829944281	54.065	0.60994	54.13	53.838	54.448	0.065128					62	22	4	0	0	0	0.045114	1	11428	11428		44.407	1.439	1	1268800			451	4859	313	315	587	587					-0.04320648757277468
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(110)EL	0	0	1		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7695922851562	2	557.267893	1112.52123	0.1445	8.0527E-05	-0.31596	-0.00017607	-0.17146	-9.5547E-05	557.2676848709356	59.082	0.40446	59.082	58.79	59.194	0					35	14	4	0	0	0	0.0022565	2	13052	13052;13099		114.2	73.207	1	1171500			452	1151	314	316	588;589	588		63			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(160)EL	0	0	1		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2677612304688	2	557.267893	1112.52123	0.33898	0.0001889	-0.093458	-5.2081E-05	0.24552	0.00013682	557.2677717057156	59.372	1.4174	59.372	59.17	60.587	0					126	53	4	0	0	0	5.8571E-07	2	13150	13150;13194		157.8	115.7	1	1350000			453	1151	314	316	590;591	590		63			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(150)EL	0	0	1		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2684326171875	2	557.267893	1112.52123	0.47971	0.00026733	0.25241	0.00014066	0.73212	0.00040798	557.2677905639978	61.956	2.268	61.956	61.551	63.819	0					216	92	3	0	0	0	1.3975E-05	8	13972	13881;13928;13972;14019;14074;14118;14169;14215		145.13	103.04	1	1673600			454	1151	314	316	592;593;594;595;596;597;598;599	594		63			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(130)EL	0	0	1		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2681274414062	2	557.267893	1112.52123	0.41493	0.00023123	-0.46024	-0.00025648	-0.04531	-2.525E-05	557.2675208945195	58.986	0.35462	59.056	58.804	59.159	0.070477					34	13	3	0	0	0	0.00041987	2	12900	12900;12943		133.05	98.95	1	829700			455	1151	314	316	600;601	600		63			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(130)EL	0	0	1		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2678833007812	2	557.267893	1112.52123	0.41092	0.00022899	-0.049576	-2.7627E-05	0.36134	0.00020136	557.2678042879813	59.273	1.2361	59.345	59.161	60.397	0.072338					116	47	4	0	0	0	0.00041987	1	12993	12993		133.05	96.546	1	1097200			456	1151	314	316	602	602		63			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(130)EL	0	0	1		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2681884765625	2	557.267893	1112.52123	0.54175	0.0003019	0.19952	0.00011119	0.74127	0.00041308	557.2677823870009	61.759	2.687	61.832	61.545	64.232	0.073421					223	109	4	0	0	0	0.00041987	6	13789	13695;13748;13789;13835;13883;13932		133.05	97.008	1	1493900			457	1151	314	316	603;604;605;606;607;608	605		63			-0.03052725385600752
APFKFDMEL	9	Unmodified	_APFKFDMEL_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2708129882812	2	549.270435	1096.52632	0.55899	0.00030703	0.010397	5.711E-06	0.56938	0.00031275	549.2704599869833	70.725	0.82278	70.725	70.506	71.329	0					64	28	4	0	0	0	0.004443	2	16618	16618;16666		93.166	60.86	1	1222200			458	1151	314	317	609;610	609					-0.01808421522991921
APFKFDMEL	9	Unmodified	_APFKFDMEL_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2706909179688	2	549.270435	1096.52632	0.68925	0.00037859	-0.11007	-6.0457E-05	0.57918	0.00031813	549.2703965306848	70.658	0.90318	70.719	70.477	71.38	0.060562					63	34	3	0	0	0	0.0011184	2	16450	16450;16495		121.53	79.44	1	1420500			459	1151	314	317	611;612	611					-0.01808421522991921
APFQNGYHRL	10	Unmodified	_APFQNGYHRL_					0	0	0			REV__nc|ENSG00000141540|Q9BSA4-2|TTYH2	REV__nc|ENSG00000141540|Q9BSA4-2|TTYH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7958984375	2	601.806897	1201.59924	0.55377	0.00033326	2.0771	0.00125	2.6309	0.0015833	601.8075104101686	92.083	0.57047	92.12	91.859	92.429	0.03653					34	19	3	0	0	0	0.42335	1	22960	22960		9.3831	1.2276	1	227750	+		460	9407	315	318	613	613					0.006504683146431489
APFSISAFSYI	11	Unmodified	_APFSISAFSYI_					0	0	0		nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.795166015625	2	601.808239	1201.60193	0.63663	0.00038313	1.2588	0.00075756	1.8954	0.0011407	601.8075265625049	92.081	0.42258	92.081	91.897	92.32	0					49	15	5	0	0	0	0.35693	1	23119	23119		11.495	2.1116	1	215700			461	1694	316	319	614	614					0.009188789289510169
APFTEGISFVL	11	Unmodified	_APFTEGISFVL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8056030273438	2	590.816064	1179.61758	0.58928	0.00034816	0.0089054	5.2615E-06	0.59819	0.00035342	590.816025224462	92.127	0.4734	92.127	92.014	92.487	0					42	17	3	0	0	0	0.011608	2	23184	23175;23184		103.35	80.617	1	1530600			462	2394	317	320	615;616	616					0.034951654459973724
APFTEGISFVL	11	Unmodified	_APFTEGISFVL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.80517578125	2	590.816064	1179.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.029	1	92.066	91.566	92.566	0.03653								0	0	0	3.231E-07	1	22963	22963		103.35	69.251	1				463	2394	317	320	617	617					0.034951654459973724
APFTEGISFVL	11	Unmodified	_APFTEGISFVL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.809326171875	2	590.816064	1179.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.18	1	92.216	91.716	92.716	0.03653								0	0	0	3.231E-07	1	23008	23008		103.35	76.47	1				464	2394	317	320	618	618					0.034951654459973724
APFTEGISFVL	11	Unmodified	_APFTEGISFVL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.805419921875	2	590.816064	1179.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.205	1	92.241	91.741	92.741	0.03653								0	0	0	1.1378E-06	1	23016	23016		92.653	65.77	1				465	2394	317	320	619	619					0.034951654459973724
APGDLETLP	9	Unmodified	_APGDLETLP_					0	0	0		nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2;ENST00000360222.8_1_19:14857708-14876689:-|nuORF	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.737060546875	2	456.737283	911.460012	0.27897	0.00012742	-0.84835	-0.00038747	-0.56938	-0.00026006	456.7367790584446	51.579	0.7285	51.579	51.208	51.937	0					39	24	2	0	0	0	0.25979	1	10779	10779		11.64	0.81637	1	73028			466	2365	318	321	620	620					0.0007408590662407732
APGDLETLP	9	Unmodified	_APGDLETLP_					0	0	0		nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2;ENST00000360222.8_1_19:14857708-14876689:-|nuORF	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	456.737283	911.460012	0.17896	8.1739E-05	-0.55254	-0.00025236	-0.37357	-0.00017063	456.73679973010604	51.421	0.67995	51.491	51.18	51.86	0.069878	-0.04365	0.00015162	NaN	11.64	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76139			467	2365	318	321							0.0007408590662407732
APGLLSNRHG	10	Unmodified	_APGLLSNRHG_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2524719238281	2	511.280515	1020.54648	-0.078432	-4.0101E-05	4.4297	0.0022648	4.3513	0.0022247	511.785814758605	30.836	0.22755	30.91	30.798	31.026	0.07378					16	10	3	0	0	0	0.46827	1	4403	4403		1.3295	0.25807	1	12656	+		468	7971	319	322	621	621					0.037025102518555286
APGPAPVWAW	10	Unmodified	_APGPAPVWAW_					0	0	0			REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF	REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2727661132812	2	526.271627	1050.5287	-0.30727	-0.00016171	0.15072	7.9318E-05	-0.15656	-8.2391E-05	526.7726759024846	21.559	0.39148	21.559	21.402	21.793	0					85	36	3	0	0	0	0.46554	3	1855	1855;1861;1942		1.8442	0.36234	1	37219	+		469	11279	320	323	622;623;624	622					0.005457949969695619
APGPAPVWAW	10	Unmodified	_APGPAPVWAW_					0	0	0			REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF	REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7725830078125	2	526.271627	1050.5287	-0.016803	-8.8429E-06	-0.051502	-2.7104E-05	-0.068305	-3.5947E-05	526.7725236712669	21.367	0.32342	21.469	21.318	21.642	0.10178					75	31	3	0	0	0	0.45239	2	1753	1718;1753		4.3292	1.0479	1	51219	+		470	11279	320	323	625;626	626					0.005457949969695619
APGSRRWPQ	9	Unmodified	_APGSRRWPQ_					0	0	0		ENST00000474511.1_1_1:16270449-16270866:-|nuORF	ENST00000474511.1_1_1:16270449-16270866:-|nuORF	ENST00000474511.1_1_1:16270449-16270866:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7796020507812	2	527.780682	1053.54681	-0.10013	-5.2849E-05	-1.2189	-0.00064332	-1.3191	-0.00069617	527.779802086982	32.014	0.65545	32.088	31.879	32.534	0.07378					56	30	3	0	0	0	0.33356	1	4813	4813		2.3027	0.24298	1	86244			471	6699	321	324	627	627					0.022179299716981404
APGYHMAK	8	Unmodified	_APGYHMAK_					0	0	0		nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;ENST00000462303.1_1_11:64518773-64519462:-|nuORF;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000068976|P11217-2|PYGM;nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7156677246094	2	437.71563	873.416708	0.3715	0.00016261	-0.93322	-0.00040848	-0.56172	-0.00024587	437.7151183930548	99.699	0.54974	99.742	99.553	100.1	0.042839					55	35	2	0	0	0	0.53423	1	25274	25274		5.2307	0	1	738080			472	1204;739	322	325	628	628					-0.025063823516575212
APHEDTLSL	9	Unmodified	_APHEDTLSL_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.74560546875	2	491.745639	981.476725	-0.30855	-0.00015173	-0.11852	-5.828E-05	-0.42706	-0.00021001	491.7457199319819	42.693	0.9358	42.693	42.423	43.358	0					87	31	4	0	0	0	0.037705	2	8078	8078;8125		46.021	11.919	1	535510			473	2876	323	326	629;630	629					-0.014754132074131121
APHEDTLSL	9	Unmodified	_APHEDTLSL_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7454833984375	2	491.745639	981.476725	-0.19801	-9.7372E-05	0.052587	2.586E-05	-0.14542	-7.1512E-05	491.7456617545611	42.616	0.60773	42.706	42.431	43.039	0.089764					49	22	3	0	0	0	0.024893	2	7968	7924;7968		54.774	27.89	1	430950			474	2876	323	326	631;632	632					-0.014754132074131121
APIAIMLWKIL	11	Unmodified	_APIAIMLWKIL_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8930053710938	2	634.893595	1267.77264	0.22866	0.00014518	-0.62297	-0.00039552	-0.3943	-0.00025034	634.8928431966361	101.42	0.5962	101.42	101.12	101.72	0					84	36	3	0	0	0	0.40738	2	25966	25966;26011		5.7319	4.0792	1	264080	+		475	10313	324	327	633;634	633					0.1494611804669148
APIAIMLWKIL	11	Unmodified	_APIAIMLWKIL_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8934936523438	2	634.893595	1267.77264	0.42067	0.00026708	-0.94753	-0.00060158	-0.52686	-0.0003345	634.8927054282128	101.34	0.66731	101.38	101.1	101.77	0.042656					83	42	3	0	0	0	0.41693	1	25759	25759		1.3295	0.92882	1	252950	+		476	10313	324	327	635	635					0.1494611804669148
APIAIMLWKIL	11	Unmodified	_APIAIMLWKIL_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	634.893595	1267.77264	0.22866	0.00014518	-0.62297	-0.00039552	-0.3943	-0.00025034	634.8928431966361	101.42	0.5962	101.42	101.12	101.72	0	0.02204	0.00027362	NaN	5.7319	84	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264080	+		477	10313	324	327							0.1494611804669148
APIALKRKL	9	Unmodified	_APIALKRKL_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.8492126464844	2	505.347669	1008.68079	-0.1461	-7.3832E-05	1.1394	0.0005758	0.9933	0.00050196	505.34802398416537	113.08	0.33572	113.08	113.02	113.35	0					71	48	3	0	0	0	0.25981	1	29000	29000		0.6015	0.076735	1	148910			478	2032	325	328	636	636					0.17679195744540266
APIQSEPRV	9	Unmodified	_APIQSEPRV_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7773132324219	2	498.777274	995.539994	0.018885	9.4196E-06	0.111	5.5365E-05	0.12989	6.4785E-05	498.77723429868666	33.604	0.83093	33.604	33.35	34.181	0					63	29	3	0	0	0	0.03918	3	5372	5327;5372;5425		45.7	11.298	1	269960			479	5472	326	329	637;638;639	638					0.04204572300477594
APIQSEPRV	9	Unmodified	_APIQSEPRV_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.77734375	2	498.777274	995.539994	0.054711	2.7289E-05	0.10018	4.9969E-05	0.1549	7.7258E-05	498.77723807484136	33.5	0.7688	33.575	33.347	34.116	0.074322					75	31	4	0	0	0	0.048027	3	5241	5197;5241;5289		43.772	14.691	1	255130			480	5472	326	329	640;641;642	641					0.04204572300477594
APIRPDIVNF	10	Unmodified	_APIRPDIVNF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.322021484375	2	571.321848	1140.62914	0.40534	0.00023158	-0.095076	-5.4319E-05	0.31027	0.00017726	571.3217509253059	60.626	0.99294	60.626	60.396	61.389	0					104	35	4	0	0	0	0.086038	2	13517	13517;13599		47.732	26.195	1	1082200			481	4585	327	330	643;644	643					0.0644540725998013
APIRPDIVNF	10	Unmodified	_APIRPDIVNF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.3219604492188	2	571.321848	1140.62914	0.20381	0.00011644	0.21864	0.00012491	0.42245	0.00024135	571.3218569424486	60.531	1.0803	60.604	60.334	61.414	0.073421					77	36	3	0	0	0	0.030989	2	13407	13359;13407		62.869	29.424	1	1287600			482	4585	327	330	645;646	646					0.0644540725998013
APIRRIPERS	10	Unmodified	_APIRRIPERS_					0	0	0			REV__ENST00000434982.2_1_5:55407235-55412649:-|nuORF	REV__ENST00000434982.2_1_5:55407235-55412649:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8561401367188	2	597.856921	1193.69929	-0.093081	-5.5649E-05	-0.42101	-0.0002517	-0.51409	-0.00030735	597.8564079419388	90.383	0.57297	90.418	90.109	90.682	0.034065					46	23	3	0	0	0	0.45945	1	22452	22452		2.9952	1.3426	1	224010	+		483	11459	328	331	647	647					0.11018705648461946
APLAARTRT	9	Unmodified	_APLAARTRT_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7859191894531	2	478.785433	955.556313	-0.1327	-6.3533E-05	0.85365	0.00040871	0.72095	0.00034518	478.7856374932871	86.93	0.69528	86.93	86.738	87.433	0					51	29	2	0	0	0	0.26684	2	21565	21565;21614		10.824	0	1	1004900	+		484	11426	329	332	648;649	648					0.07675698257230579
APLAARTRT	9	Unmodified	_APLAARTRT_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.78509521484375	2	478.785433	955.556313	-0.11962	-5.7274E-05	0.96394	0.00046152	0.84432	0.00040425	478.7855307185559	86.915	0.69317	86.942	86.706	87.399	0.027573					63	30	3	0	0	0	0.26684	2	21400	21400;21448		10.824	0	1	854800	+		485	11426	329	332	650;651	650					0.07675698257230579
APLAARTRT	9	Unmodified	_APLAARTRT_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	478.785433	955.556313	-0.1327	-6.3533E-05	0.85365	0.00040871	0.72095	0.00034518	478.7856374932871	86.93	0.69528	86.93	86.738	87.433	0	-0.006179	-4.3363E-05	NaN	10.824	51	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1004900	+		486	11426	329	332							0.07675698257230579
APLARPKPK	9	Unmodified	_APLARPKPK_					0	0	0			REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.3142395019531	2	489.316369	976.618185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.827	1	89.861	89.361	90.361	0.034065								0	0	0	0.28527	1	22292	22292		2.0598	0	1		+		487	9604	330	333	652	652					0.12894049676367558
APLARPKPK	9	Unmodified	_APLARPKPK_					0	0	0			REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.3145446777344	2	489.316369	976.618185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.99	1	90.024	89.524	90.524	0.034065								0	0	0	0.28527	1	22342	22342		2.0598	1.3694	1		+		488	9604	330	333	653	653					0.12894049676367558
APLCLWYD	8	Unmodified	_APLCLWYD_					0	0	0			REV__nc|ENSG00000198431|Q16881-6|TXNRD1	REV__nc|ENSG00000198431|Q16881-6|TXNRD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7312316894531	2	490.730946	979.447339	0.54615	0.00026801	0.233	0.00011434	0.77915	0.00038235	490.7309779913033	54.107	0.58464	54.107	53.867	54.451	0					62	20	4	0	0	0	0.1928	2	11527	11527;11578		42.968	8.7807	1	1430900	+		489	12871	331	334	654;655	654					-0.043206487572888364
APLCLWYD	8	Unmodified	_APLCLWYD_					0	0	0			REV__nc|ENSG00000198431|Q16881-6|TXNRD1	REV__nc|ENSG00000198431|Q16881-6|TXNRD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7312927246094	2	490.730946	979.447339	0.47358	0.0002324	0.21479	0.0001054	0.68837	0.0003378	490.7309829944281	54.065	0.60994	54.13	53.838	54.448	0.065128					62	22	4	0	0	0	0.11109	1	11387	11387		52.693	18.506	1	1268800	+		490	12871	331	334	656	656					-0.043206487572888364
APLEDEATL	9	Unmodified	_APLEDEATL_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7400207519531	2	479.740022	957.465492	0.30641	0.000147	-0.29978	-0.00014381	0.0066345	3.1828E-06	479.73999041230553	54.099	0.72524	54.099	53.813	54.538	0					93	27	5	0	0	0	2.6167E-05	3	11524	11524;11577;11626		139.54	68.41	1	7040400			491	3419	332	335	657;658;659	657					-0.014942353015612753
APLEDEATL	9	Unmodified	_APLEDEATL_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7401123046875	2	479.740022	957.465492	0.24478	0.00011743	-0.16988	-8.1496E-05	0.074906	3.5935E-05	479.7400085259598	54.064	0.74567	54.129	53.866	54.612	0.065128					97	33	5	0	0	0	1.1119E-05	3	11384	11384;11427;11476		147.83	66.218	1	6292200			492	3419	332	335	660;661;662	660					-0.014942353015612753
APLEPESPT	9	Unmodified	_APLEPESPT_					0	0	0			REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7345275878906	2	470.73474	939.454927	0.25299	0.00011909	-0.52727	-0.0002482	-0.27428	-0.00012911	470.7343460887171	54.106	0.42867	54.171	53.945	54.373	0.065128					40	15	3	0	0	0	0.05573	1	11449	11449		42.095	0	1	189690	+		493	12500	333	336	663	663					-0.017222179560008044
APLEPESPT	9	Unmodified	_APLEPESPT_					0	0	0			REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	470.73474	939.454927	0.40209	0.00018928	-0.37635	-0.00017716	0.025738	1.2116E-05	470.7344547130394	54.132	0.56192	54.132	53.867	54.429	0	-0.01941	6.2967E-05	NaN	42.095	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240750	+		494	12500	333	336							-0.017222179560008044
APLEPESPT	9	Unmodified	_APLEPESPT_					0	0	0			REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	470.73474	939.454927	0.25299	0.00011909	-0.52727	-0.0002482	-0.27428	-0.00012911	470.7343460887171	54.106	0.42867	54.171	53.945	54.373	0.065128	0.01941	-7.9117E-05	NaN	42.095	40	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189690	+		495	12500	333	336							-0.017222179560008044
APLREEAVRLF	11	Unmodified	_APLREEAVRLF_					0	0	0		nc|ENSG00000068137|Q7Z736-4|PLEKHH3;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;ENSG00000068137|ENST00000591022|PLEKHH3	nc|ENSG00000068137|Q7Z736-4|PLEKHH3	nc|ENSG00000068137|Q7Z736-4|PLEKHH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.25115966796875	3	434.250583	1299.72992	0.44975	0.0001953	0.79653	0.00034589	1.2463	0.0005412	434.2508744812427	59.733	0.75836	59.733	59.36	60.119	0					41	29	2	0	0	0	0.3996	1	13200	13200		4.4062	0.28952	1	275390			496	723	334	337	664	664					0.09204439242853368
APLWCSLAI	9	Unmodified	_APLWCSLAI_					0	0	0			REV__ENST00000358600.7_1_19:14492051-14492228:+|nuORF	REV__ENST00000358600.7_1_19:14492051-14492228:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.263427734375	2	487.262413	972.510274	0.039549	1.9271E-05	2.7517	0.0013408	2.7913	0.0013601	487.2637710612666	60.435	0.67167	60.508	60.239	60.91	0.073421					28	23	2	0	0	0	0.25979	1	13378	13378		11.64	2.2572	1	144760	+		497	11520	335	338	665	665					0.022919170307545755
APNECDFCV	9	Unmodified	_APNECDFCV_					0	0	0		ENST00000521314.5_1_16:67198707-67203685:+|nuORF;ENSG00000102878|ENST00000521374|HSF4	ENST00000521314.5_1_16:67198707-67203685:+|nuORF	ENST00000521314.5_1_16:67198707-67203685:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.75909423828125	2	499.191328	996.368103	0.023297	1.163E-05	0.22708	0.00011336	0.25038	0.00012499	499.1913576361878	33.138	1.1517	33.212	32.693	33.845	0.074322					62	48	2	0	0	0	0.25174	1	5063	5063		7.2892	4.9865	1	43036			498	1334	336	339	666	666					-0.13022663773710974
APPQPHHMAQ	10	Unmodified	_APPQPHHMAQ_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3342895507812	2	557.26655	1112.51855	0.56036	0.00031227	2.6017	0.0014498	3.1621	0.0017621	557.2680921679327	60.743	0.76168	60.743	60.456	61.218	0					35	27	2	0	0	0	0.44496	1	13529	13529		5.7319	0.43497	1	122460			499	4729	337	340	667	667					-0.033211359998858825
APPVRPPLA	9	Unmodified	_APPVRPPLA_					0	0	0			REV__ENST00000453407.6_3_6:33289711-33291800:-|nuORF	REV__ENST00000453407.6_3_6:33289711-33291800:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2799377441406	2	459.281995	916.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.725	1	87.755	87.255	88.255	0.030037								0	0	0	0.25692	1	21653	21653		7.9102	0.62092	1		+		500	11937	338	341	668	668					0.08782385376650836
APQAGRPF	8	Unmodified	_APQAGRPF_					0	0	0			REV__nc|ENSG00000132128|Q15345-3|LRRC41	REV__nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.87652587890625	2	422.22722	842.439886	0.49324	0.00020826	1.8913	0.00079856	2.3845	0.0010068	422.2279672559881	53.477	0.38558	53.477	53.273	53.659	0					20	15	2	0	0	0	0.3576	1	11310	11310		2.5775	0.27475	1	77125	+		501	9104	339	342	669	669					0.012363797573129887
APQPTEERL	9	Unmodified	_APQPTEERL_					0	0	0		ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.7720947265625	2	520.772188	1039.52982	-0.098124	-5.11E-05	-0.095503	-4.9736E-05	-0.19363	-0.00010084	520.772200395961	32.005	0.6534	32.005	31.731	32.385	0					69	25	3	0	0	0	0.0045688	2	4876	4876;4920		88.364	42.624	1	1324600			502	964	340	343	670;671	670					0.011639645752211436
APQPTEERL	9	Unmodified	_APQPTEERL_					0	0	0		ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.7720336914062	2	520.772188	1039.52982	-0.10678	-5.5608E-05	-0.025894	-1.3485E-05	-0.13267	-6.9093E-05	520.772219879651	31.947	0.64544	32.021	31.776	32.421	0.073782					81	29	3	0	0	0	0.0045688	1	4744	4744		88.364	42.624	1	1145200			503	964	340	343	672	672					0.011639645752211436
APRTRKTT	8	Unmodified	_APRTRKTT_					0	0	0		nc|ENSG00000159753|Q6F5E8-2|CARMIL2;ENSG00000159753|ENST00000334583|CARMIL2	nc|ENSG00000159753|Q6F5E8-2|CARMIL2	nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7772521972656	2	465.777608	929.540663	0.34572	0.00016103	-0.23161	-0.00010788	0.11412	5.3154E-05	465.77738982535624	76.225	0.86461	76.225	76.11	76.975	0					45	33	2	0	0	0	0.53858	1	18298	18298		2.3027	0	1	612650			504	3740	341	344	673	673					0.07307411740168845
APRYGTVI	8	Unmodified	_APRYGTVI_					0	0	0		BOLL|p.R34C|1|0.23|ENSG00000152430|chr2:197781751-197781751|G/A|missense_variant;ENSG00000152430|ENST00000392296|BOLL;nc|ENSG00000152430|Q8N9W6-4|BOLL;nc|ENSG00000152430|Q8N9W6-3|BOLL;nc|ENSG00000152430|Q8N9W6-2|BOLL	BOLL|p.R34C|1|0.23|ENSG00000152430|chr2:197781751-197781751|G/A|missense_variant	BOLL|p.R34C|1|0.23|ENSG00000152430|chr2:197781751-197781751|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.7504577636719	2	438.750527	875.486502	0.40184	0.00017631	-0.42933	-0.00018837	-0.027499	-1.2065E-05	438.7502950038763	37.18	0.62811	37.18	36.983	37.612	0					47	23	3	0	0	0	0.53202	1	6475	6475		6.7232	0	1	70408			505	91	342	345	674	674					0.04377819588614784
APSIGSRHH	9	Unmodified	_APSIGSRHH_					0	0	0		ENST00000369282.5_1_10:115939048-115947598:+|nuORF	ENST00000369282.5_1_10:115939048-115947598:+|nuORF	ENST00000369282.5_1_10:115939048-115947598:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.25115966796875	2	481.251757	960.488962	-0.44354	-0.00021345	-1.3386	-0.0006442	-1.7821	-0.00085765	481.2510917082623	26.26	0.38261	26.26	26.102	26.485	0					59	32	3	0	0	0	0.33704	1	3198	3198		1.8442	0.51471	1	38297			506	6192	343	346	675	675					0.007136680462735967
APSLQAPAI	9	Unmodified	_APSLQAPAI_					0	0	0			REV__ENST00000529704.5_1_11:67119307-67120167:-|nuORF	REV__ENST00000529704.5_1_11:67119307-67120167:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.88214111328125	2	434.25036	866.486168	0.37168	0.0001614	-0.63523	-0.00027585	-0.26354	-0.00011444	434.2501362821408	54.096	0.36301	54.161	53.922	54.285	0.065132					17	13	2	0	0	0	0.24791	1	11406	11406		6.2058	0	1	37023	+		507	12347	344	347	676	676					0.04758399868740071
APSRNYIYK	9	Unmodified	_APSRNYIYK_					0	0	0			REV__ENST00000453466.1_1_7:102939135-102952715:+|nuORF	REV__ENST00000453466.1_1_7:102939135-102952715:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2970581054688	2	556.298373	1110.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.435	1	14.435	13.935	14.935	0								0	0	0	0.2927	1	372	372		0.52476	0	1		+		508	8556	345	348	677	677					0.031325477088330445
APTTVPTGTL	10	Unmodified	_APTTVPTGTL_					0	0	0			REV__ENSG00000095539|ENST00000210633|SEMA4G	REV__ENSG00000095539|ENST00000210633|SEMA4G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.26593017578125	2	479.266207	956.517862	-0.077857	-3.7314E-05	0.21504	0.00010306	0.13718	6.5746E-05	479.2662070119768	36.35	0.33722	36.35	36.155	36.492	0					23	12	2	0	0	0	0.44496	1	6177	6177		5.7319	0	1	40244	+		509	8343	346	349	678	678					0.03786347832055981
APTWYRRNY	9	Unmodified	_APTWYRRNY_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.8080444335938	2	613.806897	1225.59924	-0.25533	-0.00015672	2.201	0.001351	1.9456	0.0011942	613.8081535125946	34.509	0.30581	34.509	34.395	34.701	0					17	10	2	0	0	0	0.34704	1	5657	5657		0.52476	0.066424	1	33869	+		510	10526	347	350	679	679					-0.004535316853207405
APTWYRRNY	9	Unmodified	_APTWYRRNY_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	613.806897	1225.59924	-0.25533	-0.00015672	2.201	0.001351	1.9456	0.0011942	613.8081535125946	34.509	0.30581	34.509	34.395	34.701	0	-0.021508	0.00048676	NaN	0.52476	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33869	+		511	10526	347	350							-0.004535316853207405
APTWYRRNY	9	Unmodified	_APTWYRRNY_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	613.806897	1225.59924	-0.15506	-9.5177E-05	1.2015	0.00073746	1.0464	0.00064228	613.8074699221055	34.476	0.40955	34.552	34.39	34.799	0.076244	0.021508	-0.00074025	NaN	0.52476	22	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34090	+		512	10526	347	350							-0.004535316853207405
APVETEPKL	9	Unmodified	_APVETEPKL_					0	0	0		ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2740478515625	2	492.274032	982.533512	0.31084	0.00015302	0.84102	0.00041401	1.1519	0.00056703	492.2737722787053	38.618	0.73865	38.618	38.396	39.134	0					86	27	5	0	0	0	0.0089808	2	6895	6845;6895		70.332	30.382	1	481970			513	64	348	351	680;681	681					0.041546343490949766
APVETEPKL	9	Unmodified	_APVETEPKL_					0	0	0		ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2740173339844	2	492.274032	982.533512	0.36754	0.00018093	0.92423	0.00045497	1.2918	0.0006359	492.27379199681343	38.527	0.7447	38.614	38.385	39.13	0.086884					80	27	4	0	0	0	0.005983	2	6738	6693;6738		79.596	31.848	1	356140			514	64	348	351	682;683	683					0.041546343490949766
APVFRDYVF	9	Unmodified	_APVFRDYVF_					0	0	0		ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2901000976562	2	557.290017	1112.56548	0.65879	0.00036714	0.3615	0.00020146	1.0203	0.0005686	557.2895835930738	64.144	0.79406	64.144	63.87	64.664	0					42	27	3	0	0	0	0.038996	1	14610	14610		45.74	26.483	1	309110			515	1085	349	352	684	684					0.013700468228989848
APVFRDYVF	9	Unmodified	_APVFRDYVF_					0	0	0		ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2900390625	2	557.290017	1112.56548	0.66187	0.00036885	-0.185	-0.0001031	0.47686	0.00026575	557.2896269512308	63.998	0.70238	64.069	63.886	64.589	0.071014					38	24	2	0	0	0	0.1646	1	14449	14449		22.658	6.8109	1	329730			516	1085	349	352	685	685					0.013700468228989848
APVLPEPIL	9	Unmodified	_APVLPEPIL_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7920227050781	2	474.791861	947.569169	-0.0056035	-2.6605E-06	0.095417	4.5303E-05	0.089813	4.2643E-05	474.79186186794817	78.715	0.41412	78.715	78.54	78.954	0					24	14	2	0	0	0	0.25979	1	19093	19093		11.64	6.4096	1	166160			517	4078	350	353	686	686					0.09328716596769482
APVLPEPIL	9	Unmodified	_APVLPEPIL_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7921142578125	2	474.791861	947.569169	0.068533	3.2539E-05	0.47329	0.00022471	0.54182	0.00025725	474.7919823688648	78.754	0.39967	78.784	78.536	78.936	0.030159					21	13	2	0	0	0	0.22344	2	18927	18927;18935		15.847	8.558	1	175200			518	4078	350	353	687;688	687					0.09328716596769482
APVYPQIIN	9	Unmodified	_APVYPQIIN_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.78546142578125	2	507.784567	1013.55458	0.3087	0.00015675	1.4721	0.0007475	1.7808	0.00090425	507.78527630782406	101.08	0.51269	101.08	100.91	101.42	0					60	28	3	0	0	0	0.27332	1	25856	25856		10.074	3.3508	1	131490			519	3032	351	354	689	689					0.04834644448612835
APVYPQIIN	9	Unmodified	_APVYPQIIN_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7855529785156	2	507.784567	1013.55458	0.425	0.00021581	1.5842	0.00080442	2.0092	0.0010202	507.78524633422415	100.97	0.20812	101.02	100.88	101.09	0.042839					21	13	2	0	0	0	0.22344	1	25679	25679		15.847	0.5987	1	237270			520	3032	351	354	690	690					0.04834644448612835
APWDHRPP	8	Unmodified	_APWDHRPP_					0	0	0		ENST00000397147.6_1_22:37257112-37260979:+|nuORF	ENST00000397147.6_1_22:37257112-37260979:+|nuORF	ENST00000397147.6_1_22:37257112-37260979:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2427062988281	2	488.243401	974.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.579	1	25.579	25.079	26.079	0								0	0	0	0.38822	1	3014	3014		0.69038	0.088878	1				521	6348	352	355	691	691					-0.016008328396765137
APWGKRGW	8	Unmodified	_APWGKRGW_					0	0	0		ENST00000460725.5_1_2:113955061-113955313:+|nuORF	ENST00000460725.5_1_2:113955061-113955313:+|nuORF	ENST00000460725.5_1_2:113955061-113955313:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2578430175781	2	479.256311	956.49807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.76	1	118.76	118.26	119.26	0								0	0	0	0.38822	1	29990	29990		0.79363	0	1				522	6606	353	356	692	692					0.018080614026075637
APWIPTPLL	9	Unmodified	_APWIPTPLL_					0	0	0			REV__ENST00000569441.5_1_16:733170-733950:-|nuORF	REV__ENST00000569441.5_1_16:733170-733950:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.76385498046875	2	504.299853	1006.58515	-0.22211	-0.00011201	-4.1213	-0.0020784	-4.3434	-0.0021904	504.7993047331624	42.742	0.41489	42.832	42.624	43.039	0.089764					25	15	2	0	0	0	0.2404	1	8053	8053		13.508	0.97634	1	30257	+		523	12515	354	357	693	693					0.08212422833662458
APWLPPPGL	9	Unmodified	_APWLPPPGL_					0	0	0		ENST00000313080.8_1_17:74475239-74475982:-|nuORF	ENST00000313080.8_1_17:74475239-74475982:-|nuORF	ENST00000313080.8_1_17:74475239-74475982:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2620544433594	2	474.271096	946.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.08	1	52.147	51.647	52.647	0.067173								0	0	0	0.18155	1	10810	10810		20.871	11.524	1				524	6008	355	358	694	694					0.052235806280805264
APWTLEKF	8	Unmodified	_APWTLEKF_					0	0	0			REV__ENST00000424697.5_1_7:99667832-99667979:-|nuORF	REV__ENST00000424697.5_1_7:99667832-99667979:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2638244628906	2	496.26601	990.517468	0.020424	1.0136E-05	-2.6446	-0.0013124	-2.6242	-0.0013023	496.2637822301702	39.968	0.43178	39.968	39.748	40.18	0					31	14	3	0	0	0	0.53817	1	7288	7288		2.5775	0.27475	1	65726	+		525	11823	356	359	695	695					0.021829729028468137
APWWVVWL	8	Unmodified	_APWWVVWL_					0	0	0		ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2748413085938	2	528.786913	1055.55927	-0.11132	-5.8867E-05	1.1603	0.00061355	1.049	0.00055469	528.7872535919295	31.928	0.36179	31.928	31.772	32.133	0					24	14	3	0	0	0	0.3576	1	4832	4832		0.79363	0	1	31272			526	3065	357	360	696	696					0.03371573382037241
APYEADAQL	9	Unmodified	_APYEADAQL_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2321472167969	2	489.232364	976.450176	0.10001	4.8929E-05	-0.35458	-0.00017347	-0.25457	-0.00012454	489.23214411998185	49.195	0.42133	49.195	48.973	49.394	0					35	14	3	0	0	0	0.19398	2	10075	10030;10075		19.257	3.8321	1	169300			527	4579	358	361	697;698	698					-0.0389910209877371
APYEADAQL	9	Unmodified	_APYEADAQL_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.23236083984375	2	489.232364	976.450176	-0.0023211	-1.1355E-06	-0.33906	-0.00016588	-0.34138	-0.00016702	489.232277605649	49.075	0.38194	49.151	48.956	49.338	0.076603					29	13	3	0	0	0	0.11547	2	9889	9889;9941		29.082	5.9332	1	170370			528	4579	358	361	699;700	699					-0.0389910209877371
APYFPSAC	8	Unmodified	_APYFPSAC_					0	0	0		ENST00000471209.1_1_1:155580024-155580464:+|nuORF	ENST00000471209.1_1_1:155580024-155580464:+|nuORF	ENST00000471209.1_1_1:155580024-155580464:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	428.18878173828125	2	428.188914	854.363275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.719	1	87.719	87.219	88.219	0								0	0	0	0.38822	1	21816	21816		0.79363	0	1				529	6669	359	362	701	701					-0.0697317985417385
APYHLTTVL	9	Unmodified	_APYHLTTVL_					0	0	0			REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF	REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7857360839844	2	507.784567	1013.55458	0.3087	0.00015675	1.4721	0.0007475	1.7808	0.00090425	507.78527630782406	101.08	0.51269	101.08	100.91	101.42	0					60	28	3	0	0	0	0.26684	1	25912	25912		10.824	3.5347	1	131490	+		530	7687	360	363	702	702					0.04834644448601466
APYHLTTVL	9	Unmodified	_APYHLTTVL_					0	0	0			REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF	REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	507.784567	1013.55458	0.41886	0.00021269	1.2264	0.00062276	1.6453	0.00083545	507.7852572238777	101.16	0.27634	101.2	101.09	101.36	0.042763	0.058526	-0.000178	NaN	10.824	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68837	+		531	7687	360	363							0.04834644448601466
APYHRSHKEF	10	Unmodified	_APYHRSHKEF_					0	0	0		ENST00000376621.7_1_6:30524544-30524637:-|nuORF	ENST00000376621.7_1_6:30524544-30524637:-|nuORF	ENST00000376621.7_1_6:30524544-30524637:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.3173217773438	2	636.317628	1270.6207	0.055926	3.5587E-05	-0.96525	-0.00061421	-0.90933	-0.00057862	636.3171787073612	20.563	0.1974	20.663	20.575	20.773	0.099499					37	22	2	0	0	0	0.47119	1	1532	1532		0	0	1	13237			532	6247	361	364	703	703					-0.00378146656635181
APYPGPVAL	9	Unmodified	_APYPGPVAL_					0	0	0			REV__TLE1|p.G618Efs*69|1|0.37|ENSG00000196781|chr9:81587805-81587805|C/-|frameshift_variant	REV__TLE1|p.G618Efs*69|1|0.37|ENSG00000196781|chr9:81587805-81587805|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.74737548828125	2	442.747453	883.480354	0.6529	0.00028907	-0.405	-0.00017931	0.24789	0.00010975	442.74722079681277	69.483	0.6367	69.483	69.269	69.905	0					43	21	3	0	0	0	0.11964	1	16261	16261		28.173	5.0248	1	209810	+		533	10834	362	365	704	704					0.0339530135709083
APYPGPVAL	9	Unmodified	_APYPGPVAL_					0	0	0			REV__TLE1|p.G618Efs*69|1|0.37|ENSG00000196781|chr9:81587805-81587805|C/-|frameshift_variant	REV__TLE1|p.G618Efs*69|1|0.37|ENSG00000196781|chr9:81587805-81587805|C/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	442.747453	883.480354	0.6529	0.00028907	-0.405	-0.00017931	0.24789	0.00010975	442.74722079681277	69.483	0.6367	69.483	69.269	69.905	0	-0.019286	-0.00024092	NaN	28.173	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209810	+		534	10834	362	365							0.0339530135709083
APYSVDQSL	9	Unmodified	_APYSVDQSL_					0	0	0		ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.240234375	2	490.24019	978.465826	0.14812	7.2614E-05	0.1765	8.6527E-05	0.32462	0.00015914	490.2401770121012	52.92	0.48391	52.92	52.704	53.188	0					40	17	3	0	0	0	0.0097877	2	11188	11188;11236		67.838	22.139	1	299400			535	2269	363	366	705;706	705					-0.024268155817139814
APYSVDQSL	9	Unmodified	_APYSVDQSL_					0	0	0		ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.23974609375	2	490.24019	978.465826	0.28785	0.00014111	-0.24598	-0.00012059	0.041868	2.0525E-05	490.2399801533146	52.865	0.48378	52.93	52.722	53.206	0.06543					47	21	3	0	0	0	0.0081278	2	11035	11035;11078		72.968	31.128	1	264520			536	2269	363	366	707;708	707					-0.024268155817139814
APYTWSYPE	9	Unmodified	_APYTWSYPE_					0	0	0		TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.267822265625	2	557.248015	1112.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.542	1	62.615	62.115	63.115	0.072701								0	0	0	0.25692	1	13993	13993		7.9102	0.62092	1				537	2268	364	367	709	709					-0.07026529064660281
AQAKIYWNL	9	Unmodified	_AQAKIYWNL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8034057617188	2	553.803291	1105.59203	0.076481	4.2355E-05	0.51752	0.0002866	0.594	0.00032896	553.8034054872871	58.488	0.45751	58.488	58.416	58.873	0					22	15	2	0	0	0	0.091044	1	12915	12915		34.402	21.359	1	190480			538	5243	365	368	710	710					0.0434573571421879
AQAKIYWNL	9	Unmodified	_AQAKIYWNL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.803466796875	2	553.803291	1105.59203	0.40688	0.00022533	0.18244	0.00010104	0.58932	0.00032637	553.8034782280333	58.389	0.37266	58.459	58.348	58.721	0.070477					19	12	2	0	0	0	0.017478	1	12745	12745		60.074	34.675	1	229750			539	5243	365	368	711	711					0.0434573571421879
AQARAPPRP	9	Unmodified	_AQARAPPRP_					0	0	0			REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2664489746094	2	482.277775	962.540997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.236	1	51.306	50.806	51.806	0.069874								0	0	0	0.23884	1	10555	10555		11.64	2.2929	1		+		540	7734	366	369	712	712					0.05822831460022826
AQEAAEEPLIE	11	Unmodified	_AQEAAEEPLIE_					0	0	0		ENSG00000074317|ENST00000393693|SNCB	ENSG00000074317|ENST00000393693|SNCB	ENSG00000074317|ENST00000393693|SNCB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.2939453125	2	600.29315	1198.57175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.2	1	115.2	114.7	115.7	0								0	0	0	0.33564	1	29395	29395		2.2828	0.43854	1				541	803	367	370	713	713					-0.019595245269101724
AQEKTNLEI	9	Unmodified	_AQEKTNLEI_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.30322265625	2	523.279846	1044.54514	0.3168	0.00016577	-0.89716	-0.00046947	-0.58036	-0.00030369	523.279430651022	81.78	0.26158	81.802	81.676	81.938	0.021866					17	8	3	0	0	0	0.24438	1	19814	19814		13.615	0	1	125820			542	2383	368	371	714	714					0.024648313724128457
AQFIQQYAKGN	11	Unmodified	_AQFIQQYAKGN_					0	0	0			REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF	REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3271484375	2	634.325119	1266.63569	0.22013	0.00013963	2.9814	0.0018912	3.2015	0.0020308	634.3272683539866	87.615	0.29106	87.645	87.504	87.795	0.030037					14	10	2	0	0	0	0.39569	1	21641	21641		5.2969	0.76802	1	43780	+		543	11631	369	372	715	715					0.013033004206818077
AQFIQQYAKGN	11	Unmodified	_AQFIQQYAKGN_					0	0	0			REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF	REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	634.325119	1266.63569	0.28022	0.00017775	2.2496	0.001427	2.5298	0.0016047	634.3262607053666	87.685	0.23236	87.685	87.476	87.708	0	0.020148	-0.00062618	NaN	5.2969	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56855	+		544	11631	369	372							0.013033004206818077
AQFIQQYAKGN	11	Unmodified	_AQFIQQYAKGN_					0	0	0			REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF	REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	634.325119	1266.63569	0.22013	0.00013963	2.9814	0.0018912	3.2015	0.0020308	634.3272683539866	87.615	0.29106	87.645	87.504	87.795	0.030037	-0.020148	0.00030219	NaN	5.2969	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43780	+		545	11631	369	372							0.013033004206818077
AQIPLVLVL	9	Unmodified	_AQIPLVLVL_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.3235778808594	2	483.323328	964.632104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.341	1	94.341	93.841	94.841	0								0	0	0	0.23884	1	23824	23824		11.64	3.7301	1		+		546	8496	370	373	716	716					0.1483728238479216
AQLDNWSLFD	10	Unmodified	_AQLDNWSLFD_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7687377929688	2	604.782753	1207.55095	0.88315	0.00053411	2.793	0.0016892	3.6761	0.0022233	604.7840435246978	67.787	0.51902	67.851	67.728	68.247	0.063507					25	18	2	0	0	0	0.44496	1	15596	15596		5.7319	1.4026	1	101450	+		547	10615	371	374	717	717					-0.04452070115917195
AQMYFHLFY	9	Unmodified	_AQMYFHLFY_					0	0	0		nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.86859130859375	3	407.191677	1218.5532	-0.16066	-6.5418E-05	2.6346	0.0010728	2.4739	0.0010074	407.52728264641485	33.941	0.11497	34.017	33.925	34.04	0.076248					7	4	2	0	0	0	0.26011	1	5349	5349		0.26902	0	1	3428.4			548	7515	372	375	718	718					-0.04733312911798748
AQPGYGALPP	10	Unmodified	_AQPGYGALPP_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7548522949219	2	485.753267	969.491981	-0.10364	-5.0341E-05	2.9959	0.0014553	2.8923	0.0014049	485.75446015231034	49.273	0.96701	49.35	48.691	49.658	0.076603					55	34	3	0	0	0	0.40987	1	9957	9957		10.824	1.4408	1	166910			549	5718	373	376	719	719					0.006014983804220719
AQQPRGHQR	9	Unmodified	_AQQPRGHQR_					0	0	0		ENST00000479540.5_1_20:62204354-62204564:-|nuORF	ENST00000479540.5_1_20:62204354-62204564:-|nuORF	ENST00000479540.5_1_20:62204354-62204564:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7720336914062	2	539.286663	1076.55877	0.045688	2.4639E-05	1.8179	0.00098037	1.8636	0.001005	539.2876242854654	42.924	0.22225	43.014	42.915	43.138	0.089764					13	8	2	0	0	0	0.25845	1	8061	8061		2.0598	0.21551	1	31569			550	6736	374	377	720	720					0.023555467148980824
AQQPTNLPCM	10	Unmodified	_AQQPTNLPCM_					0	0	0			REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7545776367188	2	551.754627	1101.4947	0.033992	1.8755E-05	-0.36232	-0.00019991	-0.32833	-0.00018116	551.7546742045103	33.261	0.92152	33.261	32.881	33.803	0					71	34	3	0	0	0	0.28643	1	5276	5276		24.021	5.8742	1	163690	+		551	9706	375	378	721	721					-0.05198737548585086
AQQPTNLPCM	10	Unmodified	_AQQPTNLPCM_					0	0	0			REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7548828125	2	551.754627	1101.4947	0.3293	0.00018169	0.63314	0.00034934	0.96243	0.00053103	551.7552048270942	36.895	1.0322	36.895	36.332	37.364	0					83	39	3	0	0	0	0.34138	1	6313	6313		18.146	5.1039	1	84683	+		552	9706	375	378	722	722					-0.05198737548585086
AQQPTNLPCM	10	Unmodified	_AQQPTNLPCM_					0	0	0			REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2704467773438	2	551.754627	1101.4947	0.22067	0.00012175	-0.16246	-8.9636E-05	0.058211	3.2118E-05	551.7547823866541	35.499	1.7376	35.499	34.595	36.332	0					152	65	4	0	0	0	0.29345	1	5937	5937		24.021	5.8742	1	164600	+		553	9706	375	378	723	723					-0.05198737548585086
AQQQGLFME	9	Unmodified	_AQQQGLFME_					0	0	0		ENST00000460369.3_2_1:43417536-43424401:-|nuORF	ENST00000460369.3_2_1:43417536-43424401:-|nuORF	ENST00000460369.3_2_1:43417536-43424401:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2450561523438	2	526.247492	1050.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.474	1	20.474	19.974	20.974	0								0	0	0	0.28724	1	1620	1620		1.6526	0.85899	1				554	6604	376	379	724	724					-0.042790667052031495
AQRREADSR	9	Unmodified	_AQRREADSR_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2718505859375	2	544.78141	1087.54827	0.31739	0.00017291	-1.9989	-0.001089	-1.6816	-0.00091608	544.7800022507076	52.451	0.2198	52.518	52.412	52.632	0.067173					11	7	2	0	0	0	0.19398	1	10929	10929		19.257	6.7254	1	29927	+		555	9208	377	380	725	725					0.007995192697990205
AQRYGPLP	8	Unmodified	_AQRYGPLP_					0	0	0		ENST00000432874.7_2_1:38185627-38187503:-|nuORF	ENST00000432874.7_2_1:38185627-38187503:-|nuORF	ENST00000432874.7_2_1:38185627-38187503:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.73223876953125	2	451.248152	900.481751	0.29672	0.00013389	-0.99162	-0.00044747	-0.69491	-0.00031358	451.2477004130155	36.181	0.46995	36.181	36.022	36.492	0					25	17	2	0	0	0	0.3576	1	6146	6146		4.756	0.42677	1	26423			556	6492	378	381	726	726					0.027529354458465605
AQRYGPLP	8	Unmodified	_AQRYGPLP_					0	0	0		ENST00000432874.7_2_1:38185627-38187503:-|nuORF	ENST00000432874.7_2_1:38185627-38187503:-|nuORF	ENST00000432874.7_2_1:38185627-38187503:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	451.248152	900.481751	0.095248	4.2981E-05	-0.71535	-0.0003228	-0.6201	-0.00027982	451.24773844584956	36.15	0.44554	36.232	35.966	36.412	0.081715	0.025269	0.00017771	NaN	13.508	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25075			557	6492	378	381							0.027529354458465605
AQSPRSASPPG	11	Unmodified	_AQSPRSASPPG_					0	0	0		ENSG00000246922|ENST00000559089|UBAP1L	ENSG00000246922|ENST00000559089|UBAP1L	ENSG00000246922|ENST00000559089|UBAP1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7674560546875	2	527.767437	1053.52032	-0.30294	-0.00015988	0.15893	8.3875E-05	-0.14401	-7.6006E-05	527.7674834723817	21.116	0.43152	21.116	20.933	21.365	0					116	47	3	0	0	0	0.38315	1	1774	1774		8.1555	1.4324	1	69640			558	5670	379	382	727	727					-0.004298037102898888
AQSSRPPSQP	10	Unmodified	_AQSSRPPSQP_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7676391601562	2	527.767437	1053.52032	-0.30294	-0.00015988	0.15893	8.3875E-05	-0.14401	-7.6006E-05	527.7674834723817	21.116	0.43152	21.116	20.933	21.365	0					116	47	3	0	0	0	0.44727	1	1743	1743		5.2969	0	1	69640			559	2986	380	383	728	728					-0.004298037102671515
AQVYLVVIF	9	Unmodified	_AQVYLVVIF_					0	0	0			REV__ENST00000509581.5_1_5:276369-276570:+|nuORF	REV__ENST00000509581.5_1_5:276369-276570:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.3121337890625	2	526.312961	1050.61137	0.10124	5.3285E-05	-0.26557	-0.00013978	-0.16433	-8.649E-05	526.3126764403852	73.739	0.35068	73.739	73.598	73.949	0					18	11	2	0	0	0	0.25979	1	17551	17551		11.64	0.81637	1	96686	+		560	12249	381	384	729	729					0.08808692005140983
AQWPKGIAQI	10	Unmodified	_AQWPKGIAQI_					0	0	0			REV__ENSG00000134438|ENST00000334889|RAX	REV__ENSG00000134438|ENST00000334889|RAX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8134155273438	2	556.316566	1110.61858	0.6893	0.00038347	3.0721	0.001709	3.7614	0.0020925	556.8209881954658	64.722	1.0932	64.79	64.478	65.572	0.068916					117	41	5	0	0	0	0.30541	1	14704	14704		19.257	9.0736	1	1596900	+		561	9176	382	385	730	730					0.0676942460556802
ARAQVWSK	8	Unmodified	_ARAQVWSK_					0	0	0			REV__ENST00000356731.9_1_5:179051335-179051632:-|nuORF	REV__ENST00000356731.9_1_5:179051335-179051632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.26580810546875	2	473.266876	944.519199	-0.35572	-0.00016835	-1.2166	-0.00057576	-1.5723	-0.00074411	473.2661450368689	32.461	0.54128	32.461	32.215	32.756	0					60	25	3	0	0	0	0.53557	1	5073	5073		4.3292	1.0479	1	139500	+		562	11507	383	386	731	731					0.044720267114598755
ARARCALL	8	Unmodified	_ARARCALL_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.25726318359375	2	437.257997	872.501441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.691	1	91.691	91.191	92.191	0								0	0	0	0.38822	1	23019	23019		5.2307	0.47466	1		+		563	10624	384	387	732	732					0.06008988184953523
AREHPFRA	8	Unmodified	_AREHPFRA_					0	0	0			REV__ENST00000445792.7_1_X:305849-322301:-|nuORF	REV__ENST00000445792.7_1_X:305849-322301:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.72747802734375	2	492.262125	982.509697	-0.10872	-5.352E-05	-1.3344	-0.00065687	-1.4431	-0.00071039	492.26158619851816	27.812	0.41071	27.812	27.684	28.095	0					37	24	2	0	0	0	0.3576	1	3736	3736		2.5775	0	1	19064	+		564	11903	385	388	733	733					0.01774258425939479
ARGSLKTF	8	Unmodified	_ARGSLKTF_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.2557678222656	2	440.255977	878.497401	0.65444	0.00028812	-1.8254	-0.00080366	-1.171	-0.00051554	440.2552177129398	70.63	0.49449	70.63	70.418	70.912	0					23	17	2	0	0	0	0.53858	1	16586	16586		2.3027	2.3027	1	74376			565	4525	386	389	734	734					0.05329221962892916
ARHWNLSL	8	Unmodified	_ARHWNLSL_					0	0	0			REV__nc|ENSG00000111341|P08493-2|MGP	REV__nc|ENSG00000111341|P08493-2|MGP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7718200683594	2	498.772326	995.530098	0.76766	0.00038289	-1.3303	-0.00066354	-0.56269	-0.00028065	498.77162909626134	67.31	0.97335	67.375	67.101	68.074	0.065071					73	33	4	0	0	0	0.15358	1	15475	15475		46.021	0.28107	1	1177100	+		566	12774	387	390	735	735					0.03215429085753385
ARIHHFII	8	Unmodified	_ARIHHFII_					0	0	0		ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3;ANO3|p.L330Hfs*14|1|0.16|ENSG00000134343|chr11:26537418-26537419|TT/-|frameshift_variant	ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7841796875	2	503.800886	1005.58722	0.51402	0.00025896	0.90584	0.00045636	1.4199	0.00071533	503.801083718176	97.745	0.67505	97.786	97.755	98.43	0.040855					56	34	2	0	0	0	0.48651	1	24802	24802		14.582	5.2343	1	170860			567	2663	388	391	736	736					0.08464896362136187
ARKLQLIIL	9	Unmodified	_ARKLQLIIL_					0	0	0			REV__nc|ENSG00000120156|Q02763-3|TEK	REV__nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.368896484375	2	534.368601	1066.72265	0.48579	0.00025959	0.32462	0.00017347	0.81041	0.00043306	534.3688064981136	109.28	0.41001	109.3	109.24	109.65	0.019402					65	45	2	0	0	0	0.33704	1	27951	27951		1.8442	1.3195	1	659850	+		568	8871	389	392	737	737					0.19195751433085206
ARLEGRVSL	9	Unmodified	_ARLEGRVSL_					0	0	0		ENST00000537561.5_1_3:131104193-131104271:+|nuORF	ENST00000537561.5_1_3:131104193-131104271:+|nuORF	ENST00000537561.5_1_3:131104193-131104271:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.79901123046875	2	500.79854	999.582528	0.30593	0.00015321	0.2832	0.00014183	0.58913	0.00029504	500.7985902578141	88.894	0.54242	88.894	88.701	89.244	0					54	21	3	0	0	0	0.2546	1	22258	22258		12.241	0.60036	1	476130			569	7047	390	393	738	738					0.08271967428709104
ARMKRGELF	9	Unmodified	_ARMKRGELF_					0	0	0		nc|ENSG00000164776|Q16816-2|PHKG1	nc|ENSG00000164776|Q16816-2|PHKG1	nc|ENSG00000164776|Q16816-2|PHKG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2897338867188	2	554.308218	1106.60188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.05	1	101.05	100.55	101.55	0								0	0	0	0.25361	1	25865	25865		8.5933	0	1				570	7551	391	394	739	739					0.052846004479533804
ARPCMLFD	8	Unmodified	_ARPCMLFD_					0	0	0		nc|ENSG00000006638|P21731-2|TBXA2R	nc|ENSG00000006638|P21731-2|TBXA2R	nc|ENSG00000006638|P21731-2|TBXA2R	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1980895996094	2	476.722598	951.430643	-0.37639	-0.00017943	-0.83492	-0.00039803	-1.2113	-0.00057746	476.7221622394222	31.514	0.57204	31.514	31.133	31.705	0					32	26	2	0	0	0	0.3576	1	4727	4727		2.5775	1.7838	1	17463			571	7442	392	395	740	740					-0.04701472914882743
ARPNLNHI	8	Unmodified	_ARPNLNHI_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.7631530761719	2	467.764501	933.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.874	1	84.898	84.398	85.398	0.023125								0	0	0	0.38822	1	20787	20787		2.3027	0	1		+		572	13180	393	396	741	741					0.045031425686943294
ARRGRGFLV	9	Unmodified	_ARRGRGFLV_					0	0	0		ENST00000219476.7_1_16:2097712-2098647:+|nuORF	ENST00000219476.7_1_16:2097712-2098647:+|nuORF	ENST00000219476.7_1_16:2097712-2098647:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3141479492188	2	516.314692	1030.61483	0.48131	0.00024851	-0.69206	-0.00035732	-0.21075	-0.00010881	516.3141793202999	93.538	0.88896	93.576	93.313	94.202	0.037369					94	40	4	0	0	0	0.29105	1	23379	23379		7.9102	0.62092	1	1708100			573	5797	394	397	742	742					0.10074799622339015
ARRGRGFLV	9	Unmodified	_ARRGRGFLV_					0	0	0		ENST00000219476.7_1_16:2097712-2098647:+|nuORF	ENST00000219476.7_1_16:2097712-2098647:+|nuORF	ENST00000219476.7_1_16:2097712-2098647:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	516.314692	1030.61483	0.57224	0.00029546	-0.84241	-0.00043495	-0.27017	-0.00013949	516.3141469644727	93.572	0.72808	93.572	93.268	93.997	0	-0.0015372	-3.0395E-05	NaN	7.9102	80	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1640000			574	5797	394	397							0.10074799622339015
ARRRLEIEVP	10	Unmodified	_ARRRLEIEVP_					0	0	0		nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2	nc|ENSG00000163082|Q8IWX5-2|SGPP2	nc|ENSG00000163082|Q8IWX5-2|SGPP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8698120117188	2	619.870028	1237.7255	0.20533	0.00012728	-1.0432	-0.00064665	-0.83787	-0.00051937	619.8692634850719	92.452	0.55238	92.488	92.254	92.807	0.03653					33	19	2	0	0	0	0.46746	1	23080	23080		1.4819	0.95714	1	147330			575	3877	395	398	743	743					0.11614974819894996
ARRVNVRKRN	10	Unmodified	_ARRVNVRKRN_					0	0	0		ENST00000464256.1_1_21:34132086-34144033:-|nuORF;nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;nc|ENSG00000159086|Q9Y5B6-4|PAXBP1;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1	ENST00000464256.1_1_21:34132086-34144033:-|nuORF	ENST00000464256.1_1_21:34132086-34144033:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.5976257324219	3	423.597199	1267.76977	0.51761	0.00021926	0.77165	0.00032687	1.2893	0.00054613	423.5973836783912	101.43	0.80391	101.43	101.05	101.86	0					133	52	4	0	0	0	0.46608	1	25981	25981		1.7423	0.14999	1	269680			576	3713	396	399	744	744					0.14659423756802425
ARRVNVRKRN	10	Unmodified	_ARRVNVRKRN_					0	0	0		ENST00000464256.1_1_21:34132086-34144033:-|nuORF;nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;nc|ENSG00000159086|Q9Y5B6-4|PAXBP1;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1	ENST00000464256.1_1_21:34132086-34144033:-|nuORF	ENST00000464256.1_1_21:34132086-34144033:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	423.597199	1267.76977	0.29059	0.00012309	0.9396	0.00039801	1.2302	0.0005211	423.59750110976194	101.36	0.68069	101.4	101.12	101.8	0.042656	-0.01404	7.6078E-05	NaN	1.7423	110	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337580			577	3713	396	399							0.14659423756802425
ARTAYTSAQL	10	Unmodified	_ARTAYTSAQL_					0	0	0		nc|ENSG00000120093|P14651-3|HOXB3;nc|ENSG00000120093|P14651-2|HOXB3;ENSG00000120093|ENST00000498678|HOXB3;ENSG00000105997|ENST00000612286|HOXA3	nc|ENSG00000120093|P14651-3|HOXB3	nc|ENSG00000120093|P14651-3|HOXB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2854614257812	2	541.285463	1080.55637	0.24266	0.00013135	-0.23094	-0.000125	0.011722	6.3452E-06	541.2852313127812	19.429	0.45113	19.525	19.348	19.799	0.095232					109	51	3	0	0	0	0.43214	2	1277	1277;1303		8.1555	0	1	55275			578	1501	397	400	745;746	745					0.01931653466544958
ARVARAMSIP	10	Unmodified	_ARVARAMSIP_					0	0	0		nc|ENSG00000263715|P34998-5|CRHR1;nc|ENSG00000263715|P34998-3|CRHR1;nc|ENSG00000263715|P34998-4|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1	nc|ENSG00000263715|P34998-5|CRHR1	nc|ENSG00000263715|P34998-5|CRHR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7835083007812	2	536.308218	1070.60188	0.88908	0.00047682	-0.98372	-0.00052758	-0.094643	-5.0758E-05	536.307449846191	80.53	0.41452	80.53	80.341	80.756	0					22	14	2	0	0	0	0.31532	1	19627	19627		13.042	0.80181	1	72196			579	2108	398	401	747	747					0.06940600447956058
ARVGKKGKK	9	Unmodified	_ARVGKKGKK_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;ENST00000569645.1_1_16:56485524-56487341:+|nuORF;ENST00000563733.5_1_16:56485524-56492507:+|nuORF;ENST00000568172.1_1_16:56485524-56500079:+|nuORF	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.32745361328125	2	486.327268	970.639983	0.06528	3.1748E-05	-0.21965	-0.00010682	-0.15437	-7.5075E-05	486.32708423780514	109.48	0.43311	109.5	109.21	109.65	0.019402					60	48	2	0	0	0	0.33704	1	27998	27998		1.8442	1.1539	1	1182300			580	992	399	402	748	748					0.15348854424939873
ARVGKKGKK	9	Unmodified	_ARVGKKGKK_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;ENST00000569645.1_1_16:56485524-56487341:+|nuORF;ENST00000563733.5_1_16:56485524-56492507:+|nuORF;ENST00000568172.1_1_16:56485524-56500079:+|nuORF	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	486.327268	970.639983	-0.26588	-0.00012931	0.49432	0.0002404	0.22844	0.0001111	486.32745634513236	109.48	0.20488	109.48	109.33	109.53	0	-0.010487	0.00029197	NaN	1.8442	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1727100			581	992	399	402							0.15348854424939873
ARWEIGKWS	9	Unmodified	_ARWEIGKWS_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7755126953125	2	566.79854	1131.58253	0.26756	0.00015165	0.38622	0.00021891	0.65378	0.00037056	566.798865538875	105.72	0.14037	105.75	105.68	105.82	0.029739					19	14	2	0	0	0	0.25746	1	27053	27053		3.2813	0.97858	1	59354			582	4730	400	403	749	749					0.021999674287144444
ARWIQTVL	8	Unmodified	_ARWIQTVL_					0	0	0		UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7832946777344	2	493.792727	985.5709	0.59614	0.00029437	-1.4719	-0.00072682	-0.87577	-0.00043245	493.7919046953127	85.759	0.41071	85.784	85.572	85.982	0.025169					21	14	2	0	0	0	0.3576	1	20999	20999		2.3027	0	1	146220			583	3732	401	404	750	750					0.07753770405349769
ARWIQTVL	8	Unmodified	_ARWIQTVL_					0	0	0		UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.792727	985.5709	0.48574	0.00023986	-1.4733	-0.0007275	-0.98754	-0.00048764	493.7918442916524	85.776	0.33474	85.776	85.65	85.985	0	-0.0041218	-1.003E-06	NaN	5.2307	15	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74117			584	3732	401	404							0.07753770405349769
ARYSSPRDRP	10	Unmodified	_ARYSSPRDRP_					0	0	0		ENST00000408887.3_1_12:62996462-62996639:-|nuORF	ENST00000408887.3_1_12:62996462-62996639:-|nuORF	ENST00000408887.3_1_12:62996462-62996639:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.278564453125	2	602.81271	1203.61087	0.57745	0.00034809	4.045	0.0024384	4.6224	0.0027864	602.8155217317733	88.458	0.16367	88.458	88.374	88.537	0					7	5	2	0	0	0	0.31731	1	22029	22029		6.2058	0.97511	1	50102			585	6386	402	405	751	751					0.017206653379844283
ASDCPGESTL	10	Unmodified	_ASDCPGESTL_					0	0	0		nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2054138183594	2	490.205489	978.396426	0.091888	4.5044E-05	0.2301	0.00011279	0.32199	0.00015784	490.2054282092848	35.774	0.35136	35.774	35.617	35.969	0					32	13	3	0	0	0	0.34138	2	6000	6000;6050		18.146	3.6593	1	97360			586	7632	403	406	752;753	752					-0.09363642592768429
ASDCPGESTL	10	Unmodified	_ASDCPGESTL_					0	0	0		nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2056884765625	2	490.205489	978.396426	0.12286	6.0227E-05	0.085981	4.2148E-05	0.20884	0.00010238	490.2054389125376	36.153	0.57607	36.153	35.969	36.545	0					43	21	3	0	0	0	0.38912	1	6142	6142		13.042	2.9685	1	96901			587	7632	403	406	754	754					-0.09363642592768429
ASDCPGESTL	10	Unmodified	_ASDCPGESTL_					0	0	0		nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2534484863281	2	490.205489	978.396426	0.1665	8.162E-05	0.13229	6.4851E-05	0.29879	0.00014647	490.2055672581622	38.803	1.2511	38.803	38.156	39.407	0					80	45	2	0	0	0	0.30896	1	7005	7005		18.146	1.2041	1	69528			588	7632	403	406	755	755					-0.09363642592768429
ASDCPGESTL	10	Unmodified	_ASDCPGESTL_					0	0	0		nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.20574951171875	2	490.205489	978.396426	0.10404	5.1001E-05	-0.027832	-1.3644E-05	0.076208	3.7358E-05	490.2054106761711	35.677	0.34782	35.756	35.596	35.943	0.078827					31	12	3	0	0	0	0.29844	1	5858	5858		22.736	7.898	1	80954			589	7632	403	406	756	756					-0.09363642592768429
ASDCPGESTL	10	Unmodified	_ASDCPGESTL_					0	0	0		nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.20550537109375	2	490.205489	978.396426	0.12911	6.3291E-05	0.010825	5.3066E-06	0.13994	6.8598E-05	490.20543884443674	36.053	0.4654	36.134	35.946	36.412	0.081715					33	17	2	0	0	0	0.29844	1	5989	5989		22.736	6.8891	1	88465			590	7632	403	406	757	757					-0.09363642592768429
ASDCPGESTL	10	Unmodified	_ASDCPGESTL_					0	0	0		nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2535400390625	2	490.205489	978.396426	0.22821	0.00011187	-0.19936	-9.7729E-05	0.028848	1.4142E-05	490.20530349271075	38.766	1.1069	38.853	38.385	39.492	0.08688					73	43	2	0	0	0	0.31219	1	6794	6794		17.113	3.2068	1	64719			591	7632	403	406	758	758					-0.09363642592768429
ASGGSWALAGN	11	Unmodified	_ASGGSWALAGN_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.26141357421875	2	495.735606	989.456658	0.28381	0.0001407	-3.2948	-0.0016333	-3.0109	-0.0014926	495.73406984414146	35.783	0.29175	35.862	35.817	36.109	0.078827					15	10	2	0	0	0	0.31023	1	5925	5925		8.1555	1.4324	1	17880			592	5222	404	407	759	759					-0.038491641473797245
ASGGVLGPW	9	Unmodified	_ASGGVLGPW_					0	0	0		ENST00000377294.2_1_6:28219872-28219989:-|nuORF	ENST00000377294.2_1_6:28219872-28219989:-|nuORF	ENST00000377294.2_1_6:28219872-28219989:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.2376403808594	2	422.221603	842.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.606	1	24.606	24.106	25.106	0								0	0	0	0.23884	1	2734	2734		11.64	3.7301	1				593	6255	405	408	760	760					0.001135576631781987
ASGGVLGPW	9	Unmodified	_ASGGVLGPW_					0	0	0		ENST00000377294.2_1_6:28219872-28219989:-|nuORF	ENST00000377294.2_1_6:28219872-28219989:-|nuORF	ENST00000377294.2_1_6:28219872-28219989:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.2377624511719	2	422.221603	842.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.442	1	24.538	24.038	25.038	0.096073								0	0	0	0.23884	1	2561	2561		11.64	6.4096	1				594	6255	405	408	761	761					0.001135576631781987
ASGLEALDSL	10	Unmodified	_ASGLEALDSL_					0	0	0		LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant	LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant	LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2533264160156	2	488.253297	974.492041	0.40191	0.00019624	-0.13583	-6.6321E-05	0.26608	0.00012991	488.2531500170559	64.219	1.1387	64.219	63.998	65.137	0					88	40	4	0	0	0	0.19399	1	14764	14764		34.402	3.1334	1	1463700			595	7415	406	409	762	762					0.0037745358977190335
ASGLEALDSL	10	Unmodified	_ASGLEALDSL_					0	0	0		LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant	LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant	LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.25341796875	2	488.253297	974.492041	0.3047	0.00014877	-0.01467	-7.1627E-06	0.29003	0.00014161	488.25321196683905	64.198	0.79517	64.269	63.999	64.794	0.071022					72	28	4	0	0	0	0.078033	2	14441	14441;14593		49.933	4.2334	1	915160			596	7415	406	409	763;764	763					0.0037745358977190335
ASILDEYENSL	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASILDEYENSL_					1	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.30419921875	2	648.303715	1294.59288	0.023581	1.5288E-05	0.19642	0.00012734	0.22	0.00014262	648.3038664721616	105.7	0.35249	105.7	105.51	105.86	0					57	35	2	0	0	0	0.089332	1	27239	27239		48.073	35.832	1	122230			597	1400	407	410	765	765					-0.042635592180204185
ASILDEYENSL	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASILDEYENSL_					1	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3040161132812	2	648.303715	1294.59288	0.18594	0.00012055	0.062012	4.0202E-05	0.24795	0.00016075	648.3037655551898	105.72	0.32831	105.75	105.53	105.86	0.029739					57	36	2	0	0	0	0.11869	1	27035	27035		42.835	25.722	1	110140			598	1400	407	410	766	766					-0.042635592180204185
ASLEPTATSL	10	Unmodified	_ASLEPTATSL_					0	0	0		ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.26025390625	2	495.261122	988.507691	0.31011	0.00015359	0.20574	0.0001019	0.51586	0.00025549	495.2611361656645	36.01	0.75183	36.01	35.816	36.568	0					74	29	3	0	0	0	0.26541	1	6054	6054		26.268	2.4784	1	502010			599	5717	408	411	767	767					0.0129774010682695
ASLFKNRAAR	10	Unmodified	_ASLFKNRAAR_					0	0	0			REV__ENST00000361171.7_1_9:129265800-129266223:+|nuORF	REV__ENST00000361171.7_1_9:129265800-129266223:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.330078125	2	567.330539	1132.64652	0.2232	0.00012663	-0.32185	-0.0001826	-0.098654	-5.5969E-05	567.330282121425	86.461	2.8884	86.489	85.666	88.554	0.027367					440	114	5	0	0	0	0.44496	1	21715	21715		5.7319	5.7319	1	7811600	+		600	11539	409	412	768	768					0.08550747585650242
ASLGYYLYVI	10	Unmodified	_ASLGYYLYVI_					0	0	0			REV__ELOVL1|p.M178V|1|0.38|ENSG00000066322|chr1:43364410-43364410|T/C|missense_variant	REV__ELOVL1|p.M178V|1|0.38|ENSG00000066322|chr1:43364410-43364410|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3130493164062	2	581.313158	1160.61176	0.51126	0.0002972	-0.371	-0.00021567	0.14026	8.1533E-05	581.3129710202438	96.473	0.53241	96.473	96.318	96.851	0					46	24	3	0	0	0	0.44246	1	24546	24546		6.2058	0.47393	1	475860	+		601	7911	410	413	769	769					0.0378806693433944
ASNDRPSVQF	10	Unmodified	_ASNDRPSVQF_					0	0	0			REV__PTPRG|p.L1089Wfs*4|1|0.19|ENSG00000144724|chr3:62273027-62273027|C/-|frameshift_variant	REV__PTPRG|p.L1089Wfs*4|1|0.19|ENSG00000144724|chr3:62273027-62273027|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7740478515625	2	560.772719	1119.53089	0.70232	0.00039384	3.5792	0.0020071	4.2815	0.002401	560.7745891087824	70.623	0.54439	70.684	70.425	70.969	0.060562					32	17	2	0	0	0	0.17573	1	16480	16480		36.506	0.37917	1	199670	+		602	9502	411	414	770	770					-0.024098210558577193
ASPRPLLNW	9	Unmodified	_ASPRPLLNW_					0	0	0		ENST00000522335.5_1_8:144462155-144464818:+|nuORF;ENSG00000158106|ENST00000289013|RHPN1	ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENST00000522335.5_1_8:144462155-144464818:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7657470703125	2	527.295633	1052.57671	0.34769	0.00018334	-1.5573	-0.00082116	-1.2096	-0.00063783	527.2946851499349	47.243	0.31502	47.327	47.219	47.534	0.083092					15	11	2	0	0	0	0.25921	1	9410	9410		1.4819	0	1	58460			603	3679	412	415	771	771					0.05252868917023079
ASPRPLLNW	9	Unmodified	_ASPRPLLNW_					0	0	0		ENST00000522335.5_1_8:144462155-144464818:+|nuORF;ENSG00000158106|ENST00000289013|RHPN1	ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENST00000522335.5_1_8:144462155-144464818:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.295633	1052.57671	0.41949	0.00022119	-1.6694	-0.00088025	-1.2499	-0.00065906	527.294455298954	47.355	0.33053	47.355	47.2	47.53	0	0.014035	-7.7883E-05	NaN	1.4819	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95151			604	3679	412	415							0.05252868917023079
ASPSLPPAGAI	11	Unmodified	_ASPSLPPAGAI_					0	0	0		nc|ENSG00000104866|O75864-2|PPP1R37;ENST00000540059.1_1_19:45648535-45649727:+|nuORF;ENST00000422370.2_1_19:45648535-45649504:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37	nc|ENSG00000104866|O75864-2|PPP1R37	nc|ENSG00000104866|O75864-2|PPP1R37	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7742614746094	2	490.7742	979.533846	0.14236	6.9867E-05	-0.067494	-3.3124E-05	0.074866	3.6742E-05	490.774166282021	51.585	0.55261	51.585	51.358	51.91	0					39	18	3	0	0	0	0.38315	1	10825	10825		8.1555	0.8663	1	194660			605	1439	413	416	772	772					0.04326054068940266
ASPSSHPSTSF	11	Unmodified	_ASPSSHPSTSF_					0	0	0		nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2530517578125	2	552.751453	1103.48835	0.47273	0.0002613	-1.45	-0.00080149	-0.97727	-0.00054019	553.2528394136849	87.841	1.0541	87.871	87.582	88.636	0.030037					125	39	4	0	0	0	0.1251	1	21678	21678		41.84	1.8823	1	1996300			606	3035	414	417	773	773					-0.05925216184095916
ASQWRRWGT	9	Unmodified	_ASQWRRWGT_					0	0	0			REV__ENST00000514123.5_1_16:69458605-69458701:+|nuORF	REV__ENST00000514123.5_1_16:69458605-69458701:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2908325195312	2	574.291414	1146.56827	-0.05733	-3.2924E-05	-0.42665	-0.00024502	-0.48398	-0.00027795	574.7925307123029	39.896	1.278	39.985	39.788	41.066	0.088562					67	49	2	0	0	0	0.33849	1	7413	7413		1.6526	0.17072	1	39888	+		607	12269	415	418	774	774					0.0008531500041044637
ASRRSADRWD	10	Unmodified	_ASRRSADRWD_					0	0	0			REV__ENST00000413816.6_3_12:129383828-129431963:+|nuORF	REV__ENST00000413816.6_3_12:129383828-129431963:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.2042236328125	3	407.202404	1218.58538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.578	1	82.578	82.078	83.078	0								0	0	0	0.33762	1	20248	20248		1.4551	0	1		+		608	11790	416	419	775	775					-0.015168091844316223
ASRTGSGYL	9	Unmodified	_ASRTGSGYL_					0	0	0		ENST00000373616.9_1_6:36935975-36936125:-|nuORF	ENST00000373616.9_1_6:36935975-36936125:-|nuORF	ENST00000373616.9_1_6:36935975-36936125:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.2322082519531	2	456.232699	910.450845	-0.046256	-2.1104E-05	-0.1419	-6.4738E-05	-0.18815	-8.5841E-05	456.23255139107204	27.128	0.467	27.128	26.986	27.453	0					51	30	2	0	0	0	0.33978	1	3513	3513		1.4819	0.79152	1	66071			609	6227	417	420	776	776					-0.007962626590369837
ASSFVFLNL	9	Unmodified	_ASSFVFLNL_					0	0	0		nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4;ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF	nc|ENSG00000148248|O15260-3|SURF4	nc|ENSG00000148248|O15260-3|SURF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2712707519531	2	499.271293	996.528032	0.2984	0.00014898	0.08696	4.3416E-05	0.38536	0.0001924	499.2712718263881	90.306	0.49004	90.306	90.138	90.628	0					39	19	3	0	0	0	0.10833	2	22636	22586;22636		30.637	6.616	1	344340			610	3354	418	421	777;778	778					0.029629555572796562
ASSFVFLNL	9	Unmodified	_ASSFVFLNL_					0	0	0		nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4;ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF	nc|ENSG00000148248|O15260-3|SURF4	nc|ENSG00000148248|O15260-3|SURF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2715148925781	2	499.271293	996.528032	0.066985	3.3444E-05	0.19235	9.6035E-05	0.25933	0.00012948	499.27138723180923	90.281	0.60094	90.315	90.143	90.744	0.034065					42	24	3	0	0	0	0.031665	2	22428	22428;22481		49.933	11.959	1	359930			611	3354	418	421	779;780	779					0.029629555572796562
ASSKKEVPYQL	11	Unmodified	_ASSKKEVPYQL_					0	0	0			REV__ENST00000491950.5_1_X:123480470-123505238:+|nuORF	REV__ENST00000491950.5_1_X:123480470-123505238:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.5782470703125	3	417.231077	1248.6714	-0.095127	-3.969E-05	1.121	0.00046773	1.0259	0.00042804	417.231585597777	46.203	0.43988	46.289	45.954	46.393	0.085617					25	15	3	0	0	0	0.31096	1	9033	9033		1.4551	0.38366	1	38049	+		612	10619	419	422	781	781					0.05701337877712831
ASSRATYGLMA	11	Unmodified	_ASSRATYGLMA_					0	0	0		ENST00000558532.1_1_15:64067831-64126084:-|nuORF	ENST00000558532.1_1_15:64067831-64126084:-|nuORF	ENST00000558532.1_1_15:64067831-64126084:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.78125	2	564.279323	1126.54409	-0.18264	-0.00010306	-0.14536	-8.2025E-05	-0.32801	-0.00018509	564.2789621227595	27.189	0.26821	27.189	27.016	27.284	0					22	17	2	0	0	0	0.41309	1	3480	3480		1.3295	0.63916	1	11285			613	7141	420	423	782	782					-0.01411706268117996
ASSSEEVEL	9	Unmodified	_ASSSEEVEL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.71929931640625	2	475.719287	949.424021	-0.073217	-3.4831E-05	0.12715	6.0488E-05	0.053933	2.5657E-05	475.7193350790628	52.593	0.35438	52.593	52.458	52.813	0					17	12	2	0	0	0	0.17247	1	11119	11119		21.747	0	1	79036			614	1381	421	424	783	783					-0.052714160608843486
ASSSEEVEL	9	Unmodified	_ASSSEEVEL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	475.719287	949.424021	-0.073217	-3.4831E-05	0.12715	6.0488E-05	0.053933	2.5657E-05	475.7193350790628	52.593	0.35438	52.593	52.458	52.813	0	-0.023291	2.17E-05	NaN	21.747	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79036			615	1381	421	424							-0.052714160608843486
ASTIFNMEL	9	Unmodified	_ASTIFNMEL_					0	0	0		ENST00000519844.1_1_8:101393729-101422965:-|nuORF;ENST00000523870.1_1_8:101393729-101407626:-|nuORF	ENST00000519844.1_1_8:101393729-101422965:-|nuORF	ENST00000519844.1_1_8:101393729-101422965:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2611694335938	2	513.252243	1024.48993	-0.37129	-0.00019057	-0.17664	-9.066E-05	-0.54793	-0.00028123	513.2521211500058	40.997	0.37642	40.997	40.881	41.258	0					17	13	2	0	0	0	0.20358	1	7589	7589		18.146	3.3081	1	49297			616	6949	422	425	784	784					-0.021332984196760663
ASTWWALNLF	10	Unmodified	_ASTWWALNLF_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8090209960938	2	604.808574	1207.60259	0.45827	0.00027716	0.55668	0.00033669	1.0149	0.00061385	604.8087722390891	89.289	0.42629	89.289	89.078	89.505	0					42	16	3	0	0	0	0.36006	1	22288	22288		16.149	3.1066	1	279690	+		617	7956	423	426	785	785					0.007097183686482822
ASTWWALNLF	10	Unmodified	_ASTWWALNLF_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.8087768554688	2	604.808574	1207.60259	0.55729	0.00033706	0.68397	0.00041367	1.2413	0.00075073	604.8086917301902	89.288	0.39181	89.32	89.117	89.509	0.032257					31	14	3	0	0	0	0.25276	1	22112	22112		27.629	9.4825	1	218190	+		618	7956	423	426	786	786					0.007097183686482822
ASTWWALNLF	10	Unmodified	_ASTWWALNLF_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	604.808574	1207.60259	0.45827	0.00027716	0.55668	0.00033669	1.0149	0.00061385	604.8087722390891	89.289	0.42629	89.289	89.078	89.505	0	-0.015585	-4.7699E-05	NaN	27.629	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279690	+		619	7956	423	426							0.007097183686482822
ASVIYGFSLL	10	Unmodified	_ASVIYGFSLL_					0	0	0		ENST00000560079.6_1_15:85345654-85346083:+|nuORF	ENST00000560079.6_1_15:85345654-85346083:+|nuORF	ENST00000560079.6_1_15:85345654-85346083:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.3002319335938	2	535.30005	1068.58555	0.77629	0.00041555	-0.60351	-0.00032306	0.17279	9.2492E-05	535.2997046981211	98.883	0.42891	98.925	98.724	99.153	0.041931					55	27	3	0	0	0	0.35104	1	25035	25035		17.113	3.2068	1	674260			620	7145	424	427	787	787					0.053997977628796434
ASVIYGFSLL	10	Unmodified	_ASVIYGFSLL_					0	0	0		ENST00000560079.6_1_15:85345654-85346083:+|nuORF	ENST00000560079.6_1_15:85345654-85346083:+|nuORF	ENST00000560079.6_1_15:85345654-85346083:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	535.30005	1068.58555	0.58698	0.00031421	-0.6072	-0.00032504	-0.020227	-1.0828E-05	535.2996517012318	98.875	0.43839	98.875	98.701	99.139	0	-0.025088	-2.8921E-06	NaN	17.113	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259760			621	7145	424	427							0.053997977628796434
ASVLFIVDFW	10	Unmodified	_ASVLFIVDFW_					0	0	0			REV__ENSG00000188092|ENST00000314163|GPR89B	REV__ENSG00000188092|ENST00000314163|GPR89B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2894287109375	2	598.82115	1195.62775	0.16524	9.895E-05	0.075219	4.5043E-05	0.24046	0.00014399	598.8210791244682	89.896	0.2185	89.896	89.739	89.958	0					10	8	2	0	0	0	0.31496	1	22436	22436		9.3831	3.6227	1	74428	+		622	8825	425	428	788	788					0.037757731712190434
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|18|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|14|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.28515625	2	486.285266	970.555979	0.069748	3.3917E-05	-0.14859	-7.2259E-05	-0.078845	-3.8341E-05	486.2850941120679	38.571	0.86057	38.571	38.274	39.134	0					73	31	4	0	0	0	0.0010484	2	6850	6850;6896		89.401	56.615	1	301650			623	200;3052	426	429	789;790	789					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|18|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|14|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2852478027344	2	486.285266	970.555979	0.14827	7.2102E-05	-0.17458	-8.4895E-05	-0.026308	-1.2793E-05	486.28511609517506	38.452	0.73175	38.539	38.262	38.994	0.08688					57	26	3	0	0	0	0.0062146	2	6723	6675;6723		79.596	48.328	1	253570			624	200;3052	426	429	791;792	792					0.06952278537380607
ATCPFWFPLL	10	Unmodified	_ATCPFWFPLL_					0	0	0			REV__ENST00000592887.1_1_17:76993904-77002146:-|nuORF	REV__ENST00000592887.1_1_17:76993904-77002146:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8563842773438	2	597.804445	1193.59434	0.19322	0.0001155	-0.083211	-4.9744E-05	0.11	6.5761E-05	597.8047796053121	86.406	0.3051	86.431	86.258	86.563	0.025169					25	11	3	0	0	0	0.31616	1	21229	21229		6.2058	0.9089	1	126280	+		625	12591	427	430	793	793					0.005284481276930819
ATDDPAARF	9	Unmodified	_ATDDPAARF_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7460021972656	2	482.230156	962.445759	-0.098722	-4.7607E-05	0.098551	4.7524E-05	-0.00017025	-8.21E-08	482.2300484302669	36.052	0.40835	36.052	35.944	36.352	0					23	15	2	0	0	0	0.28919	1	6107	6107		8.1555	1.9497	1	33858			626	3085	428	431	794	794					-0.036965665216712296
ATDDPAARF	9	Unmodified	_ATDDPAARF_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	482.230156	962.445759	-0.074472	-3.5913E-05	-0.26517	-0.00012787	-0.33964	-0.00016378	482.2299898920668	36.017	0.33714	36.099	35.946	36.283	0.081715	0.023511	-0.00017947	NaN	8.1555	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23924			627	3085	428	431							-0.036965665216712296
ATDLSSGRLP	10	Unmodified	_ATDLSSGRLP_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.76373291015625	2	508.772188	1015.52982	-0.44715	-0.0002275	0.076879	3.9114E-05	-0.37028	-0.00018839	508.77221106732446	41.045	0.56664	41.045	40.787	41.354	0					48	19	3	0	0	0	0.33099	1	7644	7644		19.257	1.1106	1	198120	+		628	11109	429	432	795	795					0.022679645752418764
ATDSLSTAPI	10	Unmodified	_ATDSLSTAPI_					0	0	0		nc|ENSG00000163564|Q6K0P9-6|PYHIN1;nc|ENSG00000163564|Q6K0P9-5|PYHIN1	nc|ENSG00000163564|Q6K0P9-6|PYHIN1	nc|ENSG00000163564|Q6K0P9-6|PYHIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.25311279296875	2	488.253297	974.492041	-0.27723	-0.00013536	0.1149	5.6101E-05	-0.16233	-7.9257E-05	488.25331703663807	27.918	0.54821	27.918	27.592	28.14	0					83	35	3	0	0	0	0.46656	1	3712	3712		1.6526	1.6526	1	104250			629	7547	430	433	796	796					0.00377453589749166
ATEPHPVL	8	Unmodified	_ATEPHPVL_					0	0	0			REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.8851318359375	2	432.23471	862.454868	0.17094	7.3888E-05	-0.36101	-0.00015604	-0.19007	-8.2153E-05	432.2344195070591	39.501	1.0552	39.501	39.286	40.341	0					72	37	3	0	0	0	0.3576	1	7101	7101		8.5933	0.68312	1	490690	+		630	10039	431	434	797	797					0.018138268346547193
ATEQTRTVNLN	11	Unmodified	_ATEQTRTVNLN_					0	0	0		tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2176208496094	3	416.217719	1245.63133	0.19294	8.0306E-05	-0.42901	-0.00017856	-0.23607	-9.8255E-05	416.21754452953695	34.133	0.84819	34.133	33.906	34.754	0					94	33	4	0	0	0	0.297	1	5494	5494		11.065	0	1	563260			631	13591	432	435	798	798					0.018337912071501705
ATGALAAARH	10	Unmodified	_ATGALAAARH_					0	0	0			REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.7617492675781	2	469.761958	937.509363	-0.070633	-3.3181E-05	-0.01783	-8.3758E-06	-0.088463	-4.1557E-05	469.76173465104927	17.91	0.52935	17.993	17.842	18.371	0.083696					118	64	4	0	0	0	0.17573	1	943	943		36.506	3.7205	1	112520	+		632	11365	433	436	799	799					0.03810838706078812
ATGALAAARH	10	Unmodified	_ATGALAAARH_					0	0	0			REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	469.761958	937.509363	-0.070633	-3.3181E-05	-0.01783	-8.3758E-06	-0.088463	-4.1557E-05	469.76173465104927	17.91	0.52935	17.993	17.842	18.371	0.083696	0.00017016	1.5936E-05	NaN	36.506	118	64	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112520	+		633	11365	433	436							0.03810838706078812
ATLSITCHRS	10	Unmodified	_ATLSITCHRS_					0	0	0		KMT2E|p.L1610Ffs*259|1|0.15|ENSG00000005483|chr7:105112579-105112580|-/T|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E	KMT2E|p.L1610Ffs*259|1|0.15|ENSG00000005483|chr7:105112579-105112580|-/T|frameshift_variant	KMT2E|p.L1610Ffs*259|1|0.15|ENSG00000005483|chr7:105112579-105112580|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7791137695312	2	544.77949	1087.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.056	1	90.056	89.556	90.556	0								0	0	0	0.24021	1	22519	22519		24.991	0	1				634	7378	434	437	800	800					0.00415713451729971
ATPEFVQGKEF	11	Unmodified	_ATPEFVQGKEF_					0	0	0		ENSG00000169783|ENST00000355300|LINGO1;nc|ENSG00000169783|Q96FE5-2|LINGO1	ENSG00000169783|ENST00000355300|LINGO1	ENSG00000169783|ENST00000355300|LINGO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.2936401367188	2	626.814053	1251.61355	0.21899	0.00013726	-2.6226	-0.0016439	-2.4036	-0.0015066	627.3141579586538	49.697	0.22341	49.77	49.594	49.817	0.07312					10	7	2	0	0	0	0.39569	1	10096	10096		5.2969	1.3525	1	61261			635	4357	435	438	801	801					-0.0021892404770369467
ATQVIISTR	9	Unmodified	_ATQVIISTR_					0	0	0		nc|ENSG00000293458|O60774|FMO6P	nc|ENSG00000293458|O60774|FMO6P	nc|ENSG00000293458|O60774|FMO6P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7924499511719	2	494.792924	987.571294	0.25274	0.00012505	0.20555	0.0001017	0.45828	0.00022675	494.79296603991776	35.394	0.48209	35.473	35.279	35.761	0.078827					38	18	3	0	0	0	0.27929	1	5772	5772		9.3831	0	1	73352			636	7639	436	439	802	802					0.07701145334578996
ATQVIISTR	9	Unmodified	_ATQVIISTR_					0	0	0		nc|ENSG00000293458|O60774|FMO6P	nc|ENSG00000293458|O60774|FMO6P	nc|ENSG00000293458|O60774|FMO6P	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	494.792924	987.571294	0.25796	0.00012764	0.079316	3.9245E-05	0.33728	0.00016688	494.7929872363041	35.465	0.58317	35.465	35.289	35.872	0	-0.0039924	-5.4637E-05	NaN	9.3831	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81637			637	7639	436	439							0.07701145334578996
ATRQVSSSL	9	Unmodified	_ATRQVSSSL_					0	0	0			REV__ENST00000609041.1_1_20:60581499-60581991:-|nuORF	REV__ENST00000609041.1_1_20:60581499-60581991:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2236633300781	2	474.759081	947.503609	-0.25183	-0.00011956	-0.0022285	-1.058E-06	-0.25406	-0.00012062	474.75906491756166	22.645	0.25386	22.747	22.628	22.882	0.10178					38	25	2	0	0	0	0.25579	1	2110	2110		4.3292	0.38484	1	27860	+		638	9063	437	440	803	803					0.027756954037613468
AVADGPLDVT	10	Unmodified	_AVADGPLDVT_					0	0	0			REV__nc|ENSG00000117400|P40238-2|MPL	REV__nc|ENSG00000117400|P40238-2|MPL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.24871826171875	2	479.248015	956.481476	-0.069367	-3.3244E-05	0.19517	9.3535E-05	0.1258	6.0291E-05	479.2479426116448	52.944	0.46438	52.944	52.675	53.139	0					35	16	3	0	0	0	0.31747	1	11197	11197		5.7319	2.1354	1	73278	+		639	8826	438	441	804	804					0.0014947093535511158
AVCMNYDQAKI	11	Unmodified	_AVCMNYDQAKI_					0	0	0			REV__ENSG00000153294|ENST00000283303|ADGRF4	REV__ENSG00000153294|ENST00000283303|ADGRF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.18341064453125	3	419.198503	1254.57368	0.44971	0.00018852	-3.148	-0.0013197	-2.6983	-0.0011311	419.1970975273428	80.9	0.25935	80.923	80.741	81	0.023605					10	8	2	0	0	0	0.41405	1	19553	19553		1.1098	0	1	49969	+		640	9692	439	442	805	805					-0.04342510314313586
AVEHEEKHM	9	Unmodified	_AVEHEEKHM_					0	0	0			REV__ENSG00000185885|ENST00000408968|IFITM1	REV__ENSG00000185885|ENST00000408968|IFITM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.734619140625	2	555.255848	1108.49714	0.17887	9.9318E-05	-0.33182	-0.00018425	-0.15295	-8.4929E-05	555.756626665412	25.742	0.2815	25.833	25.735	26.017	0.091507					39	23	2	0	0	0	0.25875	1	2961	2961		1.8442	0.19162	1	25747	+		641	10687	440	443	806	806					-0.05276565819258394
AVFHTVASRT	10	Unmodified	_AVFHTVASRT_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7957153320312	2	544.795998	1087.57744	0.068904	3.7539E-05	-0.74696	-0.00040694	-0.67805	-0.0003694	544.7954044901916	45.353	0.68749	45.44	45.148	45.836	0.08754					51	19	4	0	0	0	0.45794	1	8840	8840		3.2813	0.54611	1	389150			642	481	441	444	807	807					0.03715663566094918
AVGHHISE	8	Unmodified	_AVGHHISE_					0	0	0		ENST00000523504.5_1_8:22880186-22926453:-|nuORF	ENST00000523504.5_1_8:22880186-22926453:-|nuORF	ENST00000523504.5_1_8:22880186-22926453:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.2152404785156	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.333	1	91.369	90.869	91.869	0.035446								0	0	0	0.38822	1	22752	22752		0.79363	0	1				643	6974	442	445	808	808					-0.016205144849436692
AVGNDRDETSF	11	Unmodified	_AVGNDRDETSF_					0	0	0			REV__TNR|p.D1284G|1|0.26|ENSG00000116147|chr1:175324462-175324462|T/C|missense_variant	REV__TNR|p.D1284G|1|0.26|ENSG00000116147|chr1:175324462-175324462|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.18328857421875	3	404.182675	1209.52619	0.18031	7.2877E-05	1.1093	0.00044836	1.2896	0.00052124	404.18312532497936	48.224	0.90928	48.305	47.813	48.722	0.080029					54	31	3	0	0	0	0.40693	1	9686	9686		1.1098	0.038292	1	94860	+		644	13030	443	446	809	809					-0.07018749989288153
AVGSVQPAR	9	Unmodified	_AVGSVQPAR_					0	0	0		ENST00000382948.9_1_18:47802317-47803521:-|nuORF;ENST00000586118.5_1_18:47802317-47803521:-|nuORF	ENST00000382948.9_1_18:47802317-47803521:-|nuORF	ENST00000382948.9_1_18:47802317-47803521:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.751220703125	2	442.751059	883.487565	-0.122	-5.4018E-05	0.51518	0.0002281	0.39318	0.00017408	442.75115245368943	22.56	0.41539	22.56	22.425	22.84	0					52	33	2	0	0	0	0.30397	1	2176	2176		6.2058	2.2614	1	31899			645	6305	444	447	810	810					0.0411603395750717
AVGSVQPAR	9	Unmodified	_AVGSVQPAR_					0	0	0		ENST00000382948.9_1_18:47802317-47803521:-|nuORF;ENST00000586118.5_1_18:47802317-47803521:-|nuORF	ENST00000382948.9_1_18:47802317-47803521:-|nuORF	ENST00000382948.9_1_18:47802317-47803521:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	442.751059	883.487565	-0.080706	-3.5733E-05	0.7407	0.00032795	0.65999	0.00029221	442.75118540432	22.347	0.34128	22.449	22.342	22.683	0.10178	-0.055702	0.00013363	NaN	6.2058	48	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24172			646	6305	444	447							0.0411603395750717
AVIDQGLITR	10	Unmodified	_AVIDQGLITR_					0	0	0		ENSG00000278615|ENST00000524958|C11orf98;ENST00000532786.2_1_11:62430524-62432598:-|nuORF;ENST00000354588.7_1_11:62430524-62435168:-|nuORF	ENSG00000278615|ENST00000524958|C11orf98	ENSG00000278615|ENST00000524958|C11orf98	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3194580078125	2	543.319306	1084.62406	0.21148	0.0001149	-0.84534	-0.00045929	-0.63386	-0.00034439	543.3191448458451	49.185	0.56105	49.185	48.973	49.534	0					34	19	3	0	0	0	0.1025	1	10061	10061		44.945	26.223	1	112020			647	5763	445	448	811	811					0.08513103397376653
AVIDQGLITR	10	Unmodified	_AVIDQGLITR_					0	0	0		ENSG00000278615|ENST00000524958|C11orf98;ENST00000532786.2_1_11:62430524-62432598:-|nuORF;ENST00000354588.7_1_11:62430524-62435168:-|nuORF	ENSG00000278615|ENST00000524958|C11orf98	ENSG00000278615|ENST00000524958|C11orf98	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.3189086914062	2	543.319306	1084.62406	0.1554	8.4434E-05	-0.86359	-0.0004692	-0.70818	-0.00038477	543.3190275504221	49.094	0.38194	49.17	48.956	49.338	0.076603					25	13	3	0	0	0	0.32416	1	9904	9904		19.987	5.7687	1	68238			648	5763	445	448	812	812					0.08513103397376653
AVIEAEHTL	9	Unmodified	_AVIEAEHTL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000436565.2_1_13:77561342-77561690:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7626953125	2	491.763832	981.513111	-0.32387	-0.00015927	-0.68313	-0.00033594	-1.007	-0.00049521	491.7633206378717	40.825	0.39002	40.825	40.656	41.046	0					41	13	4	0	0	0	0.0046499	1	7538	7538		85.272	40.865	1	221040			649	2748	446	449	813	813					0.02161463689287757
AVIEAEHTL	9	Unmodified	_AVIEAEHTL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000436565.2_1_13:77561342-77561690:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7629089355469	2	491.763832	981.513111	-0.19369	-9.5249E-05	-0.70944	-0.00034887	-0.90312	-0.00044412	491.7632947334269	40.712	0.40982	40.802	40.657	41.067	0.089645					38	15	4	0	0	0	0.0046499	1	7380	7380		85.272	40.865	1	167280			650	2748	446	449	814	814					0.02161463689287757
AVKASARKTS	10	Unmodified	_AVKASARKTS_					0	0	0			REV__ENSG00000179813|ENST00000313851|FAM216B	REV__ENSG00000179813|ENST00000313851|FAM216B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8040466308594	2	509.803823	1017.59309	0.53124	0.00027083	-0.055093	-2.8087E-05	0.47615	0.00024274	509.8037313893562	80.9	2.9942	80.923	80.075	83.069	0.023605					311	107	4	0	0	0	0.45945	1	19612	19612		2.9952	2.9952	1	2164500	+		651	10485	447	450	815	815					0.08499950083125896
AVKLYNSGDF	10	Unmodified	_AVKLYNSGDF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2821655273438	2	557.282389	1112.55022	0.62026	0.00034566	-0.3671	-0.00020458	0.25316	0.00014108	557.2821635143218	67.479	0.70966	67.479	67.263	67.973	0					65	27	4	0	0	0	0.44246	1	15777	15777		6.2058	0.47393	1	505260			652	3074	448	451	816	816					-0.001548647649542545
AVKSRRPGPR	10	Unmodified	_AVKSRRPGPR_					0	0	0			REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF	REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.344482421875	2	562.343981	1122.67341	0.76037	0.00042759	0.072372	4.0698E-05	0.83274	0.00046829	562.3438967513465	84.59	1.0665	84.59	84.416	85.482	0					103	48	3	0	0	0	0.45794	3	20864	20864;20949;21104		3.2813	3.2813	1	1138100	+		653	11518	449	452	817;818;819	817					0.11697856196838075
AVKSRRPGPR	10	Unmodified	_AVKSRRPGPR_					0	0	0			REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF	REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.34375	2	562.343981	1122.67341	0.67629	0.00038031	-0.60067	-0.00033778	0.075623	4.2526E-05	562.3434998092586	85.35	1.4351	85.373	84.95	86.385	0.023125					122	54	3	0	0	0	0.45794	1	20915	20915		3.2813	1.6287	1	847350	+		654	11518	449	452	820	820					0.11697856196838075
AVLGRYVP	8	Unmodified	_AVLGRYVP_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.76080322265625	2	437.760895	873.507237	0.65473	0.00028662	-0.62379	-0.00027307	0.030944	1.3546E-05	437.7605264924728	63.836	1.2236	63.836	63.592	64.816	0					100	43	4	0	0	0	0.14683	1	14497	14497		46.921	2.5139	1	845390			655	3075	450	453	821	821					0.06542409968267293
AVMPPDIAAK	10	Unmodified	_AVMPPDIAAK_					0	0	0		HUWE1|p.E3092K|1|0.46|ENSG00000086758|chrX:53551012-53551012|C/T|missense_variant	HUWE1|p.E3092K|1|0.46|ENSG00000086758|chrX:53551012-53551012|C/T|missense_variant	HUWE1|p.E3092K|1|0.46|ENSG00000086758|chrX:53551012-53551012|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7928771972656	2	506.778428	1011.5423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.215	1	49.215	48.715	49.715	0								0	0	0	0.32245	1	10074	10074		14.838	3.198	1				656	7358	451	454	822	822					0.03699284713911766
AVPIFIELL	9	Unmodified	_AVPIFIELL_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.8153381347656	2	507.815336	1013.61612	0.23513	0.0001194	-0.45699	-0.00023207	-0.22186	-0.00011267	507.8151039223928	107.23	0.14149	107.26	107.17	107.32	0.025711					16	13	2	0	0	0	0.25979	1	27474	27474		11.64	0	1	302970			657	1826;493	452	455	823	823					0.10985576147879783
AVPPLHAGL	9	Unmodified	_AVPPLHAGL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.7607727050781	2	437.760895	873.507237	0.65473	0.00028662	-0.62379	-0.00027307	0.030944	1.3546E-05	437.7605264924728	63.836	1.2236	63.836	63.592	64.816	0					100	43	4	0	0	0	0.038949	1	14596	14596		45.75	9.2838	1	845390			658	2387	453	456	824	824					0.06542409968267293
AVPPLHAGL	9	Unmodified	_AVPPLHAGL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7608642578125	2	437.760895	873.507237	0.30174	0.00013209	-0.1615	-7.0698E-05	0.14024	6.1391E-05	437.7607138654721	63.707	1.187	63.778	63.563	64.75	0.071018					82	41	3	0	0	0	0.038949	1	14368	14368		45.75	1.343	1	1212600			659	2387	453	456	825	825					0.06542409968267293
AVQFTNLTM	9	Unmodified	_AVQFTNLTM_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7687377929688	2	512.760235	1023.50592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.761	1	46.761	46.261	47.261	0								0	0	0	0.26267	1	9335	9335		6.7232	1.4925	1				660	3132	454	457	826	826					-0.0048959218280515415
AVRFATPL	8	Unmodified	_AVRFATPL_					0	0	0			REV__nc|ENSG00000104381|Q8TB36-2|GDAP1	REV__nc|ENSG00000104381|Q8TB36-2|GDAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.7608337402344	2	437.760895	873.507237	0.65473	0.00028662	-0.62379	-0.00027307	0.030944	1.3546E-05	437.7605264924728	63.836	1.2236	63.836	63.592	64.816	0					100	43	4	0	0	0	0.23148	1	14545	14545		39.957	1.8061	1	845390	+		661	8507	455	458	827	827					0.06542409968267293
AVRRQLYCR	9	Unmodified	_AVRRQLYCR_					0	0	0			REV__ENST00000258200.7_1_16:67195789-67196759:+|nuORF	REV__ENST00000258200.7_1_16:67195789-67196759:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.823974609375	2	582.824566	1163.63458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.213	1	34.213	33.713	34.713	0								0	0	0	0.2927	1	5549	5549		0.52476	0	1		+		662	11221	456	459	828	828					0.05930807570803154
AVSTVTKTER	10	Unmodified	_AVSTVTKTER_					0	0	0		nc|ENSG00000183963|P53814-2|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000493335.5_1_22:31492537-31494796:+|nuORF;ENST00000460658.5_1_22:31492537-31495228:+|nuORF	nc|ENSG00000183963|P53814-2|SMTN	nc|ENSG00000183963|P53814-2|SMTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.3058471679688	2	546.306395	1090.59824	-0.34399	-0.00018793	-0.16487	-9.0067E-05	-0.50886	-0.00027799	546.306604052257	17.792	0.18689	17.792	17.718	17.905	0					29	21	2	0	0	0	0.46208	1	988	988		2.4985	0.65425	1	12549			663	4953	457	460	829	829					0.056562091550858895
AVSTVTKTER	10	Unmodified	_AVSTVTKTER_					0	0	0		nc|ENSG00000183963|P53814-2|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000493335.5_1_22:31492537-31494796:+|nuORF;ENST00000460658.5_1_22:31492537-31495228:+|nuORF	nc|ENSG00000183963|P53814-2|SMTN	nc|ENSG00000183963|P53814-2|SMTN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3062744140625	2	546.306395	1090.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.697	1	17.781	17.281	18.281	0.083696								0	0	0	0.33805	1	904	904		2.4985	0.65425	1				664	4953	457	460	830	830					0.056562091550858895
AVTSVAKVVR	10	Unmodified	_AVTSVAKVVR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3240356445312	2	515.324391	1028.63423	-0.079377	-4.0905E-05	0.36608	0.00018865	0.2867	0.00014775	515.3242610183346	28.776	0.34482	28.776	28.584	28.929	0					30	17	2	0	0	0	0.43503	1	3946	3946		7.609	5.5492	1	43946			665	4118	458	461	831	831					0.12105711122626417
AVTSVAKVVR	10	Unmodified	_AVTSVAKVVR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3240966796875	2	515.324391	1028.63423	-0.07121	-3.6696E-05	0.19281	9.9362E-05	0.1216	6.2666E-05	515.3243435845528	28.661	0.33295	28.739	28.61	28.943	0.078289					37	20	3	0	0	0	0.44727	1	3788	3788		5.2969	3.4526	1	43319			666	4118	458	461	832	832					0.12105711122626417
AVVGLQKPVKK	11	Unmodified	_AVVGLQKPVKK_					0	0	0			REV__UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant	REV__UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8843994140625	2	583.884616	1165.75468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.23	1	112.25	111.75	112.75	0.014595								0	0	0	0.32586	1	28623	28623		5.7319	2.7366	1		+		667	9785	459	462	833	833					0.1784311911619625
AVYWDELASEV	11	Unmodified	_AVYWDELASEV_					0	0	0		ENSG00000085788|ENST00000397166|DDHD2;ENST00000526370.1_1_8:38089361-38092027:+|nuORF;ENST00000519857.5_1_8:38089361-38095786:+|nuORF	ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.303466796875	2	641.303518	1280.59248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.443	1	18.443	17.943	18.943	0								0	0	0	0.34212	1	1126	1126		0	0	1				668	967	460	463	834	834					-0.03658934147279069
AWAHGRRQGLG	11	Unmodified	_AWAHGRRQGLG_					0	0	0		ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.5508728027344	3	403.551367	1207.63227	-0.21077	-8.5058E-05	-0.67812	-0.00027365	-0.88889	-0.00035871	403.5510224753201	33.288	0.44233	33.363	33.191	33.633	0.074322					30	17	2	0	0	0	0.40578	1	5188	5188		1.2148	0.76031	1	63795			669	2403	461	464	835	835					0.036760951573796774
AWAPKPYHKF	10	Unmodified	_AWAPKPYHKF_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;nc|ENSG00000071054|O95819-6|MAP4K4;CHST10-MAP4K4|4|fusion;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|3|fusion;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.5571594238281	3	415.557348	1243.65021	0.15307	6.361E-05	0.064353	2.6742E-05	0.21743	9.0353E-05	415.55715582699014	33.549	1.7119	33.549	32.856	34.568	0					129	65	3	0	0	0	0.42184	2	5326	5326;5382		9.544	3.3521	1	74081			670	3062;193;3555	462	465	836;837	836					0.038134173594926324
AWAPKPYHKF	10	Unmodified	_AWAPKPYHKF_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;nc|ENSG00000071054|O95819-6|MAP4K4;CHST10-MAP4K4|4|fusion;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|3|fusion;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.55731201171875	3	415.557348	1243.65021	-0.18278	-7.5957E-05	0.34602	0.00014379	0.16324	6.7834E-05	415.557332423983	33.275	1.2739	33.349	33.089	34.363	0.074322					149	51	4	0	0	0	0.35616	3	5171	5129;5171;5303		16.566	10.782	1	322320			671	3062;193;3555	462	465	838;839;840	839					0.038134173594926324
AWCVFFVL	8	Unmodified	_AWCVFFVL_					0	0	0			REV__ENSG00000128285|ENST00000249016|MCHR1	REV__ENSG00000128285|ENST00000249016|MCHR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2550048828125	2	492.754224	983.493896	0.5171	0.0002548	-0.48527	-0.00023912	0.031829	1.5684E-05	492.7543454929162	60.666	1.1487	60.666	60.069	61.218	0					96	41	4	0	0	0	0.51202	1	13629	13629		11.114	0	1	455150	+		672	9013	463	466	841	841					0.0014883586467249188
AWDLFHPSF	9	Unmodified	_AWDLFHPSF_					0	0	0			REV__ENST00000472467.1_1_1:155979333-155981702:-|nuORF	REV__ENST00000472467.1_1_1:155979333-155981702:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8057861328125	2	560.266542	1118.51853	0.49498	0.00027732	1.0499	0.0005882	1.5448	0.00086552	560.2658938021174	94.136	0.54821	94.136	93.997	94.545	0					43	27	3	0	0	0	0.24635	1	23817	23817		10.824	0.75	1	120790	+		673	9941	464	467	842	842					-0.035988127282507776
AWGRWESF	8	Unmodified	_AWGRWESF_					0	0	0			REV__ENST00000461912.1_1_7:56144354-56144429:+|nuORF	REV__ENST00000461912.1_1_7:56144354-56144429:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2586059570312	2	519.743234	1037.47191	0.64657	0.00033605	1.4075	0.00073155	2.0541	0.0010676	519.7439697329135	67.41	1.4919	67.475	67.042	68.534	0.065071					92	53	3	0	0	0	0.48651	1	15638	15638		14.582	0.67564	1	250190	+		674	11966	465	468	843	843					-0.04532252559533845
AWGRWESF	8	Unmodified	_AWGRWESF_					0	0	0			REV__ENST00000461912.1_1_7:56144354-56144429:+|nuORF	REV__ENST00000461912.1_1_7:56144354-56144429:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.802978515625	2	519.743234	1037.47191	0.64657	0.00033605	1.4075	0.00073155	2.0541	0.0010676	519.7439697329135	67.41	1.4919	67.475	67.042	68.534	0.065071					92	53	3	0	0	0	0.35713	1	15738	15738		14.582	2.0501	1	250190	+		675	11966	465	468	844	844					-0.04532252559533845
AWHGLLEL	8	Unmodified	_AWHGLLEL_					0	0	0		ENST00000609898.1_1_10:45454636-45454795:-|nuORF	ENST00000609898.1_1_10:45454636-45454795:-|nuORF	ENST00000609898.1_1_10:45454636-45454795:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.7558898925781	2	469.758352	937.502152	0.09561	4.4914E-05	-4.3488	-0.0020429	-4.2532	-0.001998	469.756113276411	38.159	0.25692	38.246	38.073	38.33	0.08688					15	9	2	0	0	0	0.53817	1	6630	6630		2.5775	0.73324	1	24266			676	7328	466	469	845	845					0.030901061056511026
AWHGQNRS	8	Unmodified	_AWHGQNRS_					0	0	0			REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF	REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2283630371094	2	478.228282	954.442011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.486	1	28.568	28.068	29.068	0.082134								0	0	0	0.38822	1	3727	3727		0.79363	0.10326	1		+		677	8173	467	470	846	846					-0.03703191504860115
AWHRRRQKE	9	Unmodified	_AWHRRRQKE_					0	0	0		ENST00000478590.1_1_15:66206003-66207886:-|nuORF;nc|ENSG00000157890|A6BM72-4|MEGF11;ENST00000490495.5_1_15:66202139-66208942:-|nuORF;nc|ENSG00000157890|A6BM72-2|MEGF11;nc|ENSG00000157890|A6BM72|MEGF11;ENSG00000157890|ENST00000395614|MEGF11	ENST00000478590.1_1_15:66206003-66207886:-|nuORF	ENST00000478590.1_1_15:66206003-66207886:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.9160461425781	3	422.9024	1265.68537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.634	1	88.634	88.134	89.134	0								0	0	0	0.28946	1	22089	22089		1.1933	0.12188	1				678	3671	468	471	847	847					0.06315472940013933
AWIESSVLV	9	Unmodified	_AWIESSVLV_					0	0	0		ENST00000368576.7_1_6:116979985-116981934:-|nuORF	ENST00000368576.7_1_6:116979985-116981934:-|nuORF	ENST00000368576.7_1_6:116979985-116981934:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2767333984375	2	502.276575	1002.5386	0.41758	0.00020974	0.37649	0.0001891	0.79406	0.00039884	502.2766309598898	75.21	0.54297	75.21	74.961	75.504	0					31	20	2	0	0	0	0.17247	1	17987	17987		21.747	0.20967	1	441490			679	6184	469	472	848	848					0.037429382117238674
AWIESSVLV	9	Unmodified	_AWIESSVLV_					0	0	0		ENST00000368576.7_1_6:116979985-116981934:-|nuORF	ENST00000368576.7_1_6:116979985-116981934:-|nuORF	ENST00000368576.7_1_6:116979985-116981934:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2768859863281	2	502.276575	1002.5386	0.35944	0.00018054	0.1404	7.0519E-05	0.49983	0.00025105	502.2765047417179	75.154	0.50278	75.198	74.995	75.497	0.044037					28	17	2	0	0	0	0.17247	1	17835	17835		21.747	0.20967	1	419590			680	6184	469	472	849	849					0.037429382117238674
AWINSSNN	8	Unmodified	_AWINSSNN_					0	0	0			REV__nc|ENSG00000075340|P35612-5|ADD2	REV__nc|ENSG00000075340|P35612-5|ADD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2091064453125	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.14	1	101.14	100.64	101.64	0								0	0	0	0.38822	1	25894	25894		0.79363	0	1		+		681	8195	470	473	850	850					-0.05213122210193433
AWKDFEYAW	9	Unmodified	_AWKDFEYAW_					0	0	0			REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF	REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.2803344726562	2	608.277106	1214.53966	0.62599	0.00038077	4.2686	0.0025965	4.8946	0.0029772	608.2795734540159	55.607	0.51701	55.672	55.463	55.98	0.065128					49	18	4	0	0	0	0.25209	1	11903	11903		12.532	1.0368	1	292990	+		682	9005	471	474	851	851					-0.05902847419383761
AWKVTELKGSP	11	Unmodified	_AWKVTELKGSP_					0	0	0			REV__ENSG00000185052|ENST00000328041|SLC24A3	REV__ENSG00000185052|ENST00000328041|SLC24A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.2803344726562	2	608.340238	1214.66592	0.63024	0.0003834	2.511	0.0015275	3.1412	0.0019109	608.341745872322	55.643	0.30006	55.708	55.595	55.896	0.065128					14	10	2	0	0	0	0.31001	1	11903	11903		9.3831	2.66	1	102210	+		683	10658	472	475	852	852					0.06717659085893501
AWLARGIFQVL	11	Unmodified	_AWLARGIFQVL_					0	0	0		ENST00000526621.5_3_11:57193529-57194929:-|nuORF;ENST00000529112.5_3_11:57193529-57194064:-|nuORF;ENST00000533235.5_2_11:57193529-57194920:-|nuORF;ENST00000533245.5_3_11:57193529-57194590:-|nuORF;ENST00000395123.6_1_11:57193529-57194387:-|nuORF;ENST00000532795.5_3_11:57193529-57194924:-|nuORF;ENST00000395124.5_1_11:57193529-57194590:-|nuORF	ENST00000526621.5_3_11:57193529-57194929:-|nuORF	ENST00000526621.5_3_11:57193529-57194929:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3729248046875	2	637.374415	1272.73428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.44	1	102.44	101.94	102.94	0								0	0	0	0.33436	1	26287	26287		2.7352	0.64919	1				684	6996	473	476	853	853					0.10881948456403734
AWLWKWYLG	9	Unmodified	_AWLWKWYLG_					0	0	0			REV__ENST00000377833.8_1_10:17147498-17151673:-|nuORF	REV__ENST00000377833.8_1_10:17147498-17151673:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.5688171386719	3	408.218443	1221.6335	-0.20721	-8.4586E-05	1.301	0.00053109	1.0938	0.00044651	408.21898397385456	33.209	0.74726	33.283	32.992	33.74	0.074322					36	29	2	0	0	0	0.25952	1	5248	5248		1.1933	0	1	16931	+		685	11654	474	477	854	854					0.031549164735451996
AWMRLFRQI	9	Unmodified	_AWMRLFRQI_					0	0	0			REV__ENST00000489204.1_1_10:134155720-134158159:+|nuORF	REV__ENST00000489204.1_1_10:134155720-134158159:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.2361145019531	3	407.562216	1219.66482	0.58416	0.00023808	-0.57107	-0.00023275	0.013093	5.336E-06	407.8963936791699	61.069	0.52796	61.069	60.861	61.389	0					26	18	3	0	0	0	0.25051	1	13673	13673		4.897	0	1	68011	+		686	9597	475	478	855	855					0.06377166236006815
AWNCGKRWRGS	11	Unmodified	_AWNCGKRWRGS_					0	0	0		ENST00000512559.5_1_5:23980850-23980940:+|nuORF	ENST00000512559.5_1_5:23980850-23980940:+|nuORF	ENST00000512559.5_1_5:23980850-23980940:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2976379394531	3	440.884129	1319.63056	0.16989	7.49E-05	1.8664	0.00082286	2.0363	0.00089776	440.885974090117	37.44	0.12618	37.525	37.472	37.598	0.084476					5	3	2	0	0	0	0.311	1	6406	6406		0.50596	0.23694	1	4775.8			687	6921	476	479	856	856					-0.016472819228965818
AWPFLEPVD	9	Unmodified	_AWPFLEPVD_					0	0	0		ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	ENSG00000171634|ENST00000306378|BPTF	ENSG00000171634|ENST00000306378|BPTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.284912109375	2	537.26875	1072.52295	0.24146	0.00012973	0.53838	0.00028925	0.77984	0.00041898	537.2688138743736	52.138	2.3253	52.138	51.386	53.711	0					199	85	4	0	0	0	0.21398	1	11139	11139		16.942	16.942	1	1307800			688	4453	477	480	857	857					-0.010413483053525852
AWPTSWGWW	9	Unmodified	_AWPTSWGWW_					0	0	0			REV__ENST00000064780.6_1_11:73107380-73107611:+|nuORF	REV__ENST00000064780.6_1_11:73107380-73107611:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7657470703125	2	588.766709	1175.51886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.919	1	22.919	22.419	23.419	0								0	0	0	0.2927	1	2266	2266		0.52476	0	1		+		689	11160	478	481	858	858					-0.061873930083947926
AWRAKFNIL	9	Unmodified	_AWRAKFNIL_					0	0	0		ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26	ENSG00000124215|ENST00000348616|CDH26	ENSG00000124215|ENST00000348616|CDH26	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.28857421875	2	559.827101	1117.63965	0.30807	0.00017247	-1.778	-0.0009954	-1.47	-0.00082293	559.826328426697	103.09	0.13972	103.09	103.03	103.16	0					11	8	2	0	0	0	0.25281	1	26491	26491		6.7232	0	1	54451			690	2248	479	482	859	859					0.08553434705072505
AWRAKFNIL	9	Unmodified	_AWRAKFNIL_					0	0	0		ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26	ENSG00000124215|ENST00000348616|CDH26	ENSG00000124215|ENST00000348616|CDH26	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	559.827101	1117.63965	0.5503	0.00030807	-1.4528	-0.00081329	-0.90245	-0.00050522	559.8264701493644	102.86	0.15099	102.9	102.87	103.02	0.040909	-0.095574	0.00021885	NaN	6.7232	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74733			691	2248	479	482							0.08553434705072505
AWSPPATLFLF	11	Unmodified	_AWSPPATLFLF_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3341674804688	2	625.334424	1248.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.98	1	104.98	104.48	105.48	0								0	0	0	0.32586	1	27031	27031		5.7319	3.4291	1				692	2895	480	483	860	860					0.039914620625495445
AWSPPATLFLF	11	Unmodified	_AWSPPATLFLF_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.8357543945312	2	625.334424	1248.6543	0.28809	0.00018015	-0.64369	-0.00040252	-0.3556	-0.00022237	625.8356035244121	104.86	0.15386	104.9	104.84	104.99	0.034004					24	16	2	0	0	0	0.40693	1	26824	26824		2.7352	0	1	79236			693	2895	480	483	861	861					0.039914620625495445
AWVAMWIDTF	10	Unmodified	_AWVAMWIDTF_					0	0	0			REV__ENSG00000174804|ENST00000531380|FZD4	REV__ENSG00000174804|ENST00000531380|FZD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.29833984375	2	620.296985	1238.57942	0.14113	8.7543E-05	2.1568	0.0013378	2.2979	0.0014254	620.2981376262056	74.135	0.60466	74.184	73.962	74.567	0.048546					46	21	4	0	0	0	0.17902	1	17554	17554		36.127	13.469	1	401790	+		694	10358	481	484	862	862					-0.030330437403563337
AWVCFCPNPF	10	Unmodified	_AWVCFCPNPF_					0	0	0		ENST00000222990.7_1_7:2293201-2294050:-|nuORF	ENST00000222990.7_1_7:2293201-2294050:-|nuORF	ENST00000222990.7_1_7:2293201-2294050:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.802490234375	2	592.256805	1182.49906	0.44793	0.00026529	-1.9018	-0.0011263	-1.4538	-0.00086104	592.2555279609924	75.475	0.4127	75.475	75.199	75.611	0					26	15	2	0	0	0	0.31288	1	18086	18086		15.847	0	1	198280			695	5800	482	485	863	863					-0.08489228335042753
AWVTSTYIQS	10	Unmodified	_AWVTSTYIQS_					0	0	0		ENST00000454715.5_1_3:196065156-196065342:-|nuORF	ENST00000454715.5_1_3:196065156-196065342:-|nuORF	ENST00000454715.5_1_3:196065156-196065342:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.791015625	2	578.287671	1154.56079	0.33651	0.0001946	-0.22833	-0.00013204	0.10817	6.2556E-05	578.2856793396772	37.528	1.3186	37.528	36.983	38.302	0					122	47	3	0	0	0	0.45945	1	6659	6659		2.9952	0	1	163620			696	6581	483	486	864	864					-0.010308821105354582
AWYLTYGSW	9	Unmodified	_AWYLTYGSW_					0	0	0		nc|ENSG00000139914|A5D6W6-2|FITM1;ENSG00000139914|ENST00000267426|FITM1	nc|ENSG00000139914|A5D6W6-2|FITM1	nc|ENSG00000139914|A5D6W6-2|FITM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7647705078125	2	573.766374	1145.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.384	1	59.384	58.884	59.884	0								0	0	0	0.2428	1	13168	13168		10.824	0	1				697	2991	484	487	865	865					-0.04874232448105431
AYADFVVTF	9	Unmodified	_AYADFVVTF_					0	0	0		ENST00000569488.1_1_16:85011531-85024224:-|nuORF;ENSG00000153786|ENST00000313732|ZDHHC7;nc|ENSG00000153786|Q9NXF8-2|ZDHHC7	ENST00000569488.1_1_16:85011531-85024224:-|nuORF	ENST00000569488.1_1_16:85011531-85024224:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7550659179688	2	516.755475	1031.4964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.198	1	84.198	83.698	84.698	0								0	0	0	0.16041	1	20741	20741		24.021	7.0783	1				698	3530	485	488	866	866					-0.018090371966763996
AYADFVVTF	9	Unmodified	_AYADFVVTF_					0	0	0		ENST00000569488.1_1_16:85011531-85024224:-|nuORF;ENSG00000153786|ENST00000313732|ZDHHC7;nc|ENSG00000153786|Q9NXF8-2|ZDHHC7	ENST00000569488.1_1_16:85011531-85024224:-|nuORF	ENST00000569488.1_1_16:85011531-85024224:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7560424804688	2	516.755475	1031.4964	0.42629	0.00022029	0.12858	6.6443E-05	0.55487	0.00028673	517.2565783656972	84.244	0.2585	84.266	84.063	84.321	0.021751					17	9	2	0	0	0	0.14331	1	20581	20581		36.127	12.979	1	223390			699	3530	485	488	867	867					-0.018090371966763996
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.26885986328125	2	489.26875	976.522947	0.26771	0.00013098	0.11367	5.5613E-05	0.38137	0.00018659	489.26872919854713	71.485	0.76366	71.485	71.208	71.972	0					72	26	4	0	0	0	5.0762E-05	3	16859	16811;16859;16904		139.14	60.989	1	2517700			700	5224	486	489	868;869;870	869					0.033746516946507654
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2688293457031	2	489.26875	976.522947	0.2465	0.00012061	0.11431	5.5927E-05	0.36081	0.00017653	489.2687311875137	71.392	0.71233	71.451	71.211	71.924	0.058578					75	25	4	0	0	0	6.2762E-06	3	16677	16635;16677;16727		152.41	63.509	1	2923500			701	5224	486	489	871;872;873	872					0.033746516946507654
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2977905273438	2	525.297507	1048.58046	0.4863	0.00025545	-0.19035	-9.999E-05	0.29595	0.00015546	525.2974374751678	53.96	0.81776	53.96	53.682	54.499	0					107	30	5	0	0	0	8.9172E-06	4	11523	11482;11523;11566;11609		149.91	81.833	1	5959200			702	3637	487	490	874;875;876;877	875					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2974853515625	2	525.297507	1048.58046	0.56378	0.00029615	0.46692	0.00024527	1.0307	0.00054142	525.2978105948832	54.609	0.49508	54.609	54.52	55.015	0					30	21	2	0	0	0	0.098463	1	11742	11742		32.786	11.249	1	136410			703	3637	487	490	878	878					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2980346679688	2	525.297507	1048.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.504	1	54.504	54.004	55.004	0								0	0	0	0.053425	1	11685	11685		47.749	20.12	1				704	3637	487	490	879	879					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2976684570312	2	525.297507	1048.58046	0.3755	0.00019725	-0.080705	-4.2394E-05	0.2948	0.00015486	525.2974514180961	53.924	0.70813	53.989	53.74	54.448	0.065128					95	26	5	0	0	0	0.0010793	4	11373	11329;11373;11416;11469		122.18	63.5	1	5031700			705	3637	487	490	880;881;882;883	881					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2986450195312	2	525.297507	1048.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.585	1	54.65	54.15	55.15	0.065128								0	0	0	0.16903	1	11574	11574		22.736	1.1993	1				706	3637	487	490	884	884					0.05811493900228015
AYAIITALL	9	Unmodified	_AYAIITALL_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7917785644531	2	474.791861	947.569169	0.19325	9.1755E-05	-0.0070192	-3.3327E-06	0.18623	8.8422E-05	474.79176795774265	91.72	0.67865	91.72	91.458	92.136	0					60	25	4	0	0	0	0.0010237	2	23013	23013;23063		123.1	33.669	1	1042000			707	4847	488	491	885;886	885					0.09328716596746744
AYAIITALL	9	Unmodified	_AYAIITALL_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7917175292969	2	474.791861	947.569169	0.016633	7.8972E-06	0.24164	0.00011473	0.25827	0.00012262	474.7918393456675	91.677	0.7524	91.712	91.436	92.188	0.035446					56	26	3	0	0	0	0.0030029	2	22819	22819;22864		109.63	20.202	1	1071100			708	4847	488	491	887;888	887					0.09328716596746744
AYAKFYTLL	9	Unmodified	_AYAKFYTLL_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3035888671875	2	545.302593	1088.59063	0.72525	0.00039548	1.0319	0.00056271	1.7572	0.00095818	545.3030657294066	65.875	1.0759	65.875	65.578	66.654	0					88	39	3	0	0	0	0.0044564	1	15144	15144		92.653	56.609	1	1238500			709	2832	489	492	889	889					0.049881016254630595
AYAKFYTLL	9	Unmodified	_AYAKFYTLL_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3035888671875	2	545.302593	1088.59063	0.55165	0.00030082	1.2885	0.00070264	1.8402	0.0010035	545.3031744163559	65.827	0.98872	65.894	65.615	66.604	0.066872					83	37	3	0	0	0	0.012041	1	15024	15024		63.961	35.474	1	1344300			710	2832	489	492	890	890					0.049881016254630595
AYALLLQHL	9	Unmodified	_AYALLLQHL_					0	0	0		ENST00000489483.5_1_3:48670389-48671049:-|nuORF;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.3082275390625	2	521.30821	1040.60187	0.37411	0.00019503	-0.10416	-5.4298E-05	0.26996	0.00014073	521.3080264928337	67.977	0.94813	67.977	67.669	68.617	0					67	31	3	0	0	0	0.0042188	1	15789	15789		101.72	61.273	1	768850			711	5606	490	493	891	891					0.08318923719616578
AYALLLQHL	9	Unmodified	_AYALLLQHL_					0	0	0		ENST00000489483.5_1_3:48670389-48671049:-|nuORF;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.3082275390625	2	521.30821	1040.60187	0.48079	0.00025064	-0.33896	-0.0001767	0.14183	7.3938E-05	521.30785875209	67.91	0.80581	67.974	67.782	68.588	0.063507					67	29	3	0	0	0	0.0042188	1	15621	15621		101.72	61.273	1	610420			712	5606	490	493	892	892					0.08318923719616578
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7666015625	2	513.766374	1025.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.285	1	73.285	72.785	73.785	0								0	0	0	0.04112	1	17408	17408		51.63	11.391	1				713	4812	491	494	893	893					0.0064576755189591495
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.766357421875	2	513.766374	1025.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.285	1	73.338	72.838	73.838	0.052574								0	0	0	2.1651E-08	1	17254	17254		110.55	58.284	1				714	4812	491	494	894	894					0.0064576755189591495
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.76605224609375	2	482.766178	963.517802	-0.41026	-0.00019806	-0.26162	-0.0001263	-0.67188	-0.00032436	482.7662549551459	44.108	1.1931	44.108	43.748	44.942	0					89	41	3	0	0	0	0.081567	5	8562	8481;8526;8562;8609;8662		36.466	21.884	1	414490			715	2394	492	495	895;896;897;898;899	897					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.25054931640625	2	482.766178	963.517802	-0.26066	-0.00012584	-0.19519	-9.4229E-05	-0.45585	-0.00022007	482.76623459548074	43.969	0.93831	44.058	43.767	44.705	0.088924					69	32	3	0	0	0	0.11964	4	8328	8328;8382;8400;8446		28.173	15.642	1	368110			716	2394	492	495	900;901;902;903	900					0.03458392622712836
AYAPQGWIAFF	11	Unmodified	_AYAPQGWIAFF_					0	0	0		ENST00000461986.5_1_1:78183501-78187881:-|nuORF;nc|ENSG00000077254|Q8TEY7-3|USP33;FUBP1-USP33|5|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|2|fusion	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.8165283203125	2	635.816399	1269.61824	0.47269	0.00030055	-0.16084	-0.00010226	0.31186	0.00019828	635.8162129592324	97.959	0.72999	97.959	97.741	98.471	0					117	38	4	0	0	0	0.0077594	3	24931	24888;24931;24971		88.954	76.713	1	1174400			717	857	493	496	904;905;906	905					-0.005779951143040307
AYAPQGWIAFF	11	Unmodified	_AYAPQGWIAFF_					0	0	0		ENST00000461986.5_1_1:78183501-78187881:-|nuORF;nc|ENSG00000077254|Q8TEY7-3|USP33;FUBP1-USP33|5|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|2|fusion	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.8162231445312	2	635.816399	1269.61824	0.51997	0.0003306	-0.19716	-0.00012536	0.32281	0.00020525	635.8161274527912	97.984	0.67505	98.024	97.755	98.43	0.040855					100	34	4	0	0	0	0.013463	3	24738	24738;24776;24821		71.922	63.767	1	1215600			718	857	493	496	907;908;909	907					-0.005779951143040307
AYAQEIQKL	9	Unmodified	_AYAQEIQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8004760742188	2	532.292756	1062.57096	-0.096514	-5.1374E-05	-0.28961	-0.00015416	-0.38613	-0.00020553	532.2925976075645	43.961	0.37077	43.961	43.719	44.09	0					20	12	2	0	0	0	0.092521	1	8491	8491		49.527	21.033	1	142740			719	4051	494	497	910	910					0.04217725614716983
AYAQEIQKL	9	Unmodified	_AYAQEIQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.80078125	2	532.292756	1062.57096	0.12796	6.8114E-05	-0.37173	-0.00019787	-0.24377	-0.00012975	532.2926733615915	43.808	0.38745	43.897	43.713	44.1	0.088924					22	13	2	0	0	0	0.11848	1	8329	8329		43.982	17.098	1	101590			720	4051	494	497	911	911					0.04217725614716983
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2764282226562	2	541.276909	1080.53927	-0.49286	-0.00026677	-0.12603	-6.8218E-05	-0.61889	-0.00033499	541.2767312667183	42.026	1.5275	42.026	41.8	43.327	0					120	52	4	0	0	0	0.00034446	4	7911	7911;7961;8005;8062		134.3	99.894	1	1004600			721	1737	495	498	912;913;914;915	912					0.0022177765142714634
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2767333984375	2	541.276909	1080.53927	-0.23107	-0.00012507	-0.00010692	-5.7872E-08	-0.23118	-0.00012513	541.2767899898856	41.928	1.1899	42.017	41.79	42.98	0.089764					113	45	5	0	0	0	0.00034446	3	7768	7768;7811;7892		134.3	100.19	1	1200300			722	1737	495	498	916;917;918	916					0.0022177765142714634
AYAVWALLL	9	Unmodified	_AYAVWALLL_					0	0	0		ENST00000564640.5_1_16:771244-771968:+|nuORF;ENST00000566525.5_1_16:770887-771532:+|nuORF;ENSG00000103254|ENST00000569529|ANTKMT	ENST00000564640.5_1_16:771244-771968:+|nuORF	ENST00000564640.5_1_16:771244-771968:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2995910644531	2	510.299853	1018.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.26	1	104.26	103.76	104.76	0								0	0	0	0.28409	1	26822	26822		2.3027	0.24298	1				723	1360	496	499	919	919					0.07660422833657776
AYAYLFKYI	9	Unmodified	_AYAYLFKYI_					0	0	0		nc|ENSG00000104388|P61019-2|RAB2A;ENSG00000104388|ENST00000262646|RAB2A;ENST00000481569.1_1_8:61429766-61471511:+|nuORF	nc|ENSG00000104388|P61019-2|RAB2A	nc|ENSG00000104388|P61019-2|RAB2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7926635742188	2	576.310418	1150.60628	0.15023	8.6581E-05	-1.6	-0.00092212	-1.4498	-0.00083554	576.3092532692907	73.825	0.25879	73.825	73.69	73.949	0					14	8	2	0	0	0	0.13538	1	17580	17580		15.847	0	1	140330			724	1410	497	500	920	920					0.03700388142533484
AYAYLFKYI	9	Unmodified	_AYAYLFKYI_					0	0	0		nc|ENSG00000104388|P61019-2|RAB2A;ENSG00000104388|ENST00000262646|RAB2A;ENST00000481569.1_1_8:61429766-61471511:+|nuORF	nc|ENSG00000104388|P61019-2|RAB2A	nc|ENSG00000104388|P61019-2|RAB2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7926635742188	2	576.310418	1150.60628	0.37708	0.00021732	-1.4696	-0.00084697	-1.0926	-0.00062965	576.3093065065785	73.794	0.26498	73.847	73.701	73.966	0.052567					14	9	2	0	0	0	0.1217	1	17425	17425		23.148	7.3012	1	115150			725	1410	497	500	921	921					0.03700388142533484
AYCVKAQTF	9	Unmodified	_AYCVKAQTF_					0	0	0		ENST00000475972.1_1_3:136705553-136729062:+|nuORF;NR4A1-IL20RB|1|fusion;ENSG00000174564|ENST00000329582|IL20RB	ENST00000475972.1_1_3:136705553-136729062:+|nuORF	ENST00000475972.1_1_3:136705553-136729062:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7542114257812	2	515.754953	1029.49535	-0.5338	-0.00027531	-0.47847	-0.00024677	-1.0123	-0.00052208	515.7546140768443	41.862	0.47916	41.862	41.627	42.106	0					38	16	3	0	0	0	0.064059	1	7852	7852		57.722	36.851	1	93647			726	4589	498	501	922	922					-0.0182157483723131
AYCVKAQTF	9	Unmodified	_AYCVKAQTF_					0	0	0		ENST00000475972.1_1_3:136705553-136729062:+|nuORF;NR4A1-IL20RB|1|fusion;ENSG00000174564|ENST00000329582|IL20RB	ENST00000475972.1_1_3:136705553-136729062:+|nuORF	ENST00000475972.1_1_3:136705553-136729062:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7549438476562	2	515.754953	1029.49535	-0.33636	-0.00017348	-0.49532	-0.00025546	-0.83168	-0.00042895	515.7545351265506	41.809	0.432	41.899	41.687	42.119	0.089764					32	16	3	0	0	0	0.03472	2	7697	7697;7747		47.749	25.012	1	97939			727	4589	498	501	923;924	923					-0.0182157483723131
AYCYENPEIL	10	Unmodified	_AYCYENPEIL_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7752685546875	2	607.773539	1213.53253	0.59933	0.00036426	0.37119	0.0002256	0.97052	0.00058986	607.7732127508918	52.318	0.69371	52.385	52.058	52.752	0.067173					45	26	2	0	0	0	0.33099	1	10869	10869		19.257	1.1106	1	108100			728	5378	499	502	925	925					-0.06569948082119481
AYDFLYNYL	9	Unmodified	_AYDFLYNYL_					0	0	0		ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.2796020507812	2	591.279315	1180.54408	0.35371	0.00020914	0.34036	0.00020125	0.69407	0.00041039	591.2789509149358	90.618	0.39452	90.618	90.439	90.834	0					39	14	3	0	0	0	0.16392	1	22721	22721		32.786	21.145	1	225710			729	1729	500	503	926	926					-0.03897382996478882
AYDLFVLF	8	Unmodified	_AYDLFVLF_					0	0	0			REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7539367675781	2	494.262936	986.51132	0.40889	0.0002021	-3.6048	-0.0017817	-3.1959	-0.0015796	494.2605973981141	48.148	0.48865	48.148	47.911	48.399	0					30	16	3	0	0	0	0.52502	1	9784	9784		9.3474	0	1	77573	+		730	9934	501	504	927	927					0.017524546713275413
AYDPEDDTIL	10	Unmodified	_AYDPEDDTIL_					0	0	0		DIDO1|p.E1431D|1|0.34|ENSG00000101191|chr20:62881663-62881663|C/G|missense_variant	DIDO1|p.E1431D|1|0.34|ENSG00000101191|chr20:62881663-62881663|C/G|missense_variant	DIDO1|p.E1431D|1|0.34|ENSG00000101191|chr20:62881663-62881663|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2576293945312	2	576.258776	1150.503	0.23783	0.00013705	-1.3578	-0.00078243	-1.1199	-0.00064538	576.25790206176	95.598	0.54377	95.598	95.328	95.872	0					60	23	3	0	0	0	0.27354	1	24202	24202		25.399	6.1423	1	2074000			731	279	502	505	928	928					-0.0662318882659747
AYDPEDDTIL	10	Unmodified	_AYDPEDDTIL_					0	0	0		DIDO1|p.E1431D|1|0.34|ENSG00000101191|chr20:62881663-62881663|C/G|missense_variant	DIDO1|p.E1431D|1|0.34|ENSG00000101191|chr20:62881663-62881663|C/G|missense_variant	DIDO1|p.E1431D|1|0.34|ENSG00000101191|chr20:62881663-62881663|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2589111328125	2	576.258776	1150.503	0.24916	0.00014358	-1.292	-0.00074454	-1.0429	-0.00060096	576.2579375287124	95.504	0.61631	95.543	95.308	95.924	0.038864					57	28	3	0	0	0	0.33099	1	24035	24035		19.257	0	1	1569700			732	279	502	505	929	929					-0.0662318882659747
AYDTVRWEF	9	Unmodified	_AYDTVRWEF_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7800903320312	2	593.780013	1185.54547	0.49996	0.00029687	0.068309	4.0561E-05	0.56827	0.00033743	593.7798454170774	63.984	2.1726	63.984	63.707	65.879	0					179	78	5	0	0	0	1.5265E-05	3	14584	14537;14584;14628		143.91	100.14	1	4099300			733	4682	503	506	930;931;932	931					-0.039877489077071004
AYDTVRWEF	9	Unmodified	_AYDTVRWEF_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.7802124023438	2	593.780013	1185.54547	0.38196	0.0002268	0.23917	0.00014201	0.62113	0.00036881	593.7799486287065	63.887	1.4302	63.958	63.706	65.136	0.071014					147	51	4	0	0	0	1.5265E-05	4	14419	14419;14424;14464;14518		143.91	103.96	1	3625400			734	4682	503	506	933;934;935;936	933					-0.039877489077071004
AYDVLFHQW	9	Unmodified	_AYDVLFHQW_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.78369140625	2	589.785099	1177.55564	0.44949	0.0002651	-1.008	-0.00059449	-0.55848	-0.00032938	589.7843553798795	69.457	0.36512	69.52	69.387	69.752	0.062119					18	10	2	0	0	0	0.0081278	1	16100	16100		72.968	49.178	1	201200			735	4788	504	507	937	937					-0.026031411824760653
AYEDRELQVE	10	Unmodified	_AYEDRELQVE_					0	0	0			REV__nc|ENSG00000290359|Q0D2H9|GOLGA8DP	REV__nc|ENSG00000290359|Q0D2H9|GOLGA8DP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.86712646484375	3	417.866575	1250.5779	0.29449	0.00012306	1.3244	0.00055342	1.6189	0.00067648	417.8671164317867	47.459	0.65502	47.542	47.219	47.874	0.083092					61	25	4	0	0	0	0.42901	1	9388	9388		5.0475	0	1	127740	+		736	9696	505	508	938	938					-0.03737006295386891
AYEDWFITL	9	Unmodified	_AYEDWFITL_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2793579101562	2	579.279315	1156.54408	0.45873	0.00026573	-0.18222	-0.00010556	0.2765	0.00016017	579.2790871821348	96.466	0.42651	96.466	96.318	96.745	0					47	19	3	0	0	0	0.091044	2	24477	24477;24523		34.402	25.019	1	479730			737	914	506	509	939;940	939					-0.027933829964695178
AYEDWFITL	9	Unmodified	_AYEDWFITL_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.279296875	2	579.279315	1156.54408	0.53732	0.00031126	0.059406	3.4413E-05	0.59672	0.00034567	579.2791555705437	96.452	0.45783	96.492	96.344	96.802	0.039772					48	23	3	0	0	0	0.074645	2	24297	24297;24354		37.974	28.591	1	293110			738	914	506	509	941;942	941					-0.027933829964695178
AYEGQTALN	9	Unmodified	_AYEGQTALN_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7154235839844	2	483.729989	965.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.58	1	69.58	69.08	70.08	0								0	0	0	0.23884	1	16279	16279		11.64	0.81637	1				739	4228	507	510	943	943					-0.038679862415278876
AYEIIDQFF	9	Unmodified	_AYEIIDQFF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.2794189453125	2	573.279315	1144.54408	0.43442	0.00024905	-0.23729	-0.00013604	0.19713	0.00011301	573.2791778145472	91.708	1.0784	91.708	91.435	92.513	0					138	40	5	0	0	0	0.0022565	4	23021	23021;23061;23109;23156		114.2	70.343	1	5344900			740	5076	508	511	944;945;946;947	944					-0.022413829964762044
AYEIIDQFF	9	Unmodified	_AYEIIDQFF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2794799804688	2	573.279315	1144.54408	0.29681	0.00017016	-0.080578	-4.6194E-05	0.21624	0.00012396	573.2792485359555	91.677	0.99236	91.712	91.436	92.428	0.035446					116	34	5	0	0	0	0.0022565	6	22861	22811;22861;22885;22907;22959;23039		114.2	70.343	1	5022700			741	5076	508	511	948;949;950;951;952;953	949					-0.022413829964762044
AYEISQFII	9	Unmodified	_AYEISQFII_					0	0	0			REV__PPEF1|p.T43I|1|0.68|ENSG00000086717|chrX:18730262-18730262|C/T|missense_variant	REV__PPEF1|p.T43I|1|0.68|ENSG00000086717|chrX:18730262-18730262|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.3075561523438	2	542.289682	1082.56481	0.55528	0.00030113	2.3931	0.0012978	2.9484	0.0015989	542.2894579242981	100.61	0.41763	100.66	100.41	100.83	0.042831					43	23	3	0	0	0	0.14091	1	25575	25575		25.399	2.663	1	59320	+		742	12962	509	512	954	954					0.026832073831883463
AYEKFFLLL	9	Unmodified	_AYEKFFLLL_					0	0	0		ENSG00000198121|ENST00000683809|LPAR1;nc|ENSG00000198121|Q92633-2|LPAR1	ENSG00000198121|ENST00000683809|LPAR1	ENSG00000198121|ENST00000683809|LPAR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3136596679688	2	572.326068	1142.63758	0.46728	0.00026743	-0.081211	-4.6479E-05	0.38606	0.00022095	572.3259281605917	83.356	0.4613	83.356	83.173	83.634	0					32	15	3	0	0	0	0.12214	1	20496	20496		27.629	0.74515	1	105150			743	5348	510	513	955	955					0.07196961176623518
AYELNYSIF	9	Unmodified	_AYELNYSIF_					0	0	0		tr|U7SNA5|U7SNA5_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01768PE=3SV=1	tr|U7SNA5|U7SNA5_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01768PE=3SV=1	tr|U7SNA5|U7SNA5_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01768PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7113647460938	2	560.27149	1118.52843	0.447	0.00025044	-3.5122	-0.0019678	-3.0652	-0.0017173	560.772374216244	91.761	0.60593	91.798	91.499	92.105	0.03653					37	21	3	0	0	0	0.2404	1	22900	22900		13.508	2.684	1	74624			744	13507	511	514	956	956					-0.02609669513526569
AYELTQYYF	9	Unmodified	_AYELTQYYF_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.27734375	2	599.276772	1196.53899	0.31875	0.00019102	0.37097	0.00022232	0.68972	0.00041333	599.2768725435211	77.472	0.84309	77.472	77.254	78.097	0					91	35	4	0	0	0	0.0043591	4	18657	18657;18697;18749;18808		96.367	52.508	1	1721600			745	3965	512	515	957;958;959;960	957					-0.05141686859087713
AYELTQYYF	9	Unmodified	_AYELTQYYF_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2770385742188	2	599.276772	1196.53899	0.3995	0.00023941	0.29556	0.00017713	0.69507	0.00041654	599.2769148945946	77.341	0.64619	77.375	77.263	77.909	0.034485					64	26	3	0	0	0	0.0043591	4	18488	18488;18526;18578;18584		96.367	44.098	1	1828400			746	3965	512	515	961;962;963;964	961					-0.05141686859087713
AYEYTTIRR	9	Unmodified	_AYEYTTIRR_					0	0	0		ENSG00000168263|ENST00000382082|KCNV2	ENSG00000168263|ENST00000382082|KCNV2	ENSG00000168263|ENST00000382082|KCNV2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7888793945312	2	586.806562	1171.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.89	1	66.955	66.455	67.455	0.065071								0	0	0	0.23452	1	15312	15312		12.532	2.4576	1				747	4273	513	516	965	965					0.019636288749325104
AYFDFPELL	9	Unmodified	_AYFDFPELL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.776611328125	2	557.776408	1113.53826	0.69492	0.00038761	-0.37203	-0.00020751	0.32288	0.0001801	557.7763099646329	98.178	1.4042	98.178	97.839	99.244	0					240	85	5	0	0	0	2.1075E-17	2	24958	24958;25000		196.94	145.31	1	10166000			748	4835	514	517	966;967	966					-0.013964815081408233
AYFDFPELL	9	Unmodified	_AYFDFPELL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7767333984375	2	557.776408	1113.53826	0.7589	0.0004233	-0.45767	-0.00025528	0.30123	0.00016802	557.776286317334	98.052	0.95619	98.094	97.802	98.758	0.041931					170	50	5	0	0	0	7.6618E-09	4	24801	24754;24762;24801;24853		162.95	119.18	1	8643300			749	4835	514	517	968;969;970;971	970					-0.013964815081408233
AYFKRYQVKF	10	Unmodified	_AYFKRYQVKF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.5829162597656	3	450.583674	1348.72919	-0.46145	-0.00020792	-0.98734	-0.00044488	-1.4488	-0.0006528	450.58314317599815	41.845	0.77297	41.845	41.65	42.423	0					60	26	3	0	0	0	0.42715	2	7854	7854;7923		8.9762	5.6566	1	101420			750	2180	515	518	972;973	972					0.06877644593782861
AYFKRYQVKF	10	Unmodified	_AYFKRYQVKF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.5830993652344	3	450.583674	1348.72919	-0.50233	-0.00022634	-0.52019	-0.00023439	-1.0225	-0.00046073	450.58330427382407	41.676	0.71403	41.765	41.556	42.27	0.089764					67	28	4	0	0	0	0.35616	1	7684	7684		16.566	10.332	1	188340			751	2180	515	518	974	974					0.06877644593782861
AYFNFPEL	8	Unmodified	_AYFNFPEL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7424621582031	2	500.742368	999.470183	0.21698	0.00010865	-0.0021341	-1.0686E-06	0.21485	0.00010758	500.7424242095931	86.277	0.38831	86.277	86.079	86.467	0					23	14	2	0	0	0	0.39599	1	21354	21354		26.884	14.352	1	129160			752	2860	516	519	975	975					-0.029573063681368694
AYFNFPEL	8	Unmodified	_AYFNFPEL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7425842285156	2	500.742368	999.470183	0.37807	0.00018932	-0.058229	-2.9158E-05	0.31984	0.00016016	500.7423022904201	86.291	0.35889	86.316	86.089	86.447	0.025177					21	12	2	0	0	0	0.12247	1	21203	21203		50.855	32.72	1	133800			753	2860	516	519	976	976					-0.029573063681368694
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2850341796875	2	557.2844	1112.55425	0.37445	0.00020867	-0.024591	-1.3704E-05	0.34986	0.00019497	557.2847677970672	95.583	2.244	95.583	95.194	97.438	0					320	107	5	0	0	0	3.2846000000000005E-19	15	24172	24124;24172;24210;24258;24300;24341;24383;24426;24500;24543;24590;24631;24684;24738;24747		214.14	139.21	1	144940000			754	2860	517	520	977;978;979;980;981;982;983;984;985;986;987;988;989;990;991	978					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7763061523438	2	557.2844	1112.55425	0.71721	0.00039969	-0.49976	-0.00027851	0.21745	0.00012118	557.2838082306001	97.525	0.48604	97.525	97.461	97.947	0					46	22	3	0	0	0	0.028398	2	24916	24868;24916		52.268	29.532	1	94877			755	2860	517	520	992;993	993					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2848510742188	2	557.2844	1112.55425	0.458	0.00025523	-0.17225	-9.5993E-05	0.28574	0.00015924	557.2847559018574	95.492	1.8579	95.531	95.216	97.074	0.038872					191	93	5	0	0	0	2.0801E-17	12	24005	23962;24005;24046;24087;24124;24166;24214;24253;24340;24384;24437;24484		197.17	122.24	1	119220000			756	2860	517	520	994;995;996;997;998;999;1000;1001;1002;1003;1004;1005	995					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2843017578125	2	557.2844	1112.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.791	1	97.832	97.332	98.332	0.040855								0	0	0	0.22204	1	24720	24720		14.838	4.7643	1				757	2860	517	520	1006	1006					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2849731445312	2	557.2844	1112.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.859	1	97.9	97.4	98.4	0.040855								0	0	0	0.24643	1	24741	24741		10.074	2.7847	1				758	2860	517	520	1007	1007					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2867431640625	2	557.2844	1112.55425	0.78103	0.00043526	0.49089	0.00027356	1.2719	0.00070882	557.2846351450581	97.196	0.55547	97.237	97.076	97.632	0.040848					38	26	2	0	0	0	0.2229	1	24546	24546		19.257	2.3147	1	96997			759	2860	517	520	1008	1008					0.002472247287641949
AYFPELIANF	10	Unmodified	_AYFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.803466796875	2	592.802957	1183.59136	0.49746	0.00029489	0.65253	0.00038682	1.15	0.00068172	592.8032660457402	93.757	0.50919	93.757	93.506	94.015	0					71	23	5	0	0	0	3.2609E-11	2	23623	23623;23669		171.09	101.98	1	5758800			760	3992	518	521	1009;1010	1009					0.006908962745228564
AYFPELIANF	10	Unmodified	_AYFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8029174804688	2	592.802957	1183.59136	0.47257	0.00028014	-0.8971	-0.0005318	-0.42453	-0.00025166	592.8024688954877	93.959	0.16631	93.959	93.941	94.107	0					18	10	2	0	0	0	0.001284	1	23710	23710		86.332	34.702	1	1370100			761	3992	518	521	1011	1011					0.006908962745228564
AYFPELIANF	10	Unmodified	_AYFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8037109375	2	592.802957	1183.59136	0.41883	0.00024828	0.38127	0.00022602	0.8001	0.0004743	592.8030553245999	93.801	0.64074	93.838	93.534	94.175	0.037369					90	30	4	0	0	0	3.5955E-23	3	23491	23445;23491;23534		199.75	161.78	1	3951200			762	3992	518	521	1012;1013;1014	1013					0.006908962745228564
AYFQFFEE	8	Unmodified	_AYFQFFEE_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2691040039062	2	540.737283	1079.46001	0.041222	2.229E-05	2.4534	0.0013266	2.4946	0.0013489	540.7385447980854	34.166	0.37143	34.166	33.883	34.254	0					18	13	2	0	0	0	0.3576	1	5463	5463		5.7604	0.52976	1	20859			763	1110	519	522	1015	1015					-0.07653914093384628
AYFTSRDLF	9	Unmodified	_AYFTSRDLF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;LIMK2-ATXN10|2|fusion	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2779541015625	2	560.277106	1118.53966	0.37528	0.00021026	0.84552	0.00047373	1.2208	0.00068399	560.2775248280583	61.786	1.3645	61.786	61.605	62.969	0					141	55	4	0	0	0	0.0028323	1	13880	13880		110.67	62.926	1	3125400			764	7567	520	523	1016	1016					-0.014868474193917791
AYFTSRDLF	9	Unmodified	_AYFTSRDLF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;LIMK2-ATXN10|2|fusion	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2777709960938	2	560.277106	1118.53966	0.42983	0.00024082	0.70038	0.00039241	1.1302	0.00063323	560.2774292857104	61.665	1.1487	61.738	61.569	62.717	0.073418					111	48	3	0	0	0	0.0021834	1	13714	13714		114.65	66.9	1	2893800			765	7567	520	523	1017	1017					-0.014868474193917791
AYFVEYLI	8	Unmodified	_AYFVEYLI_					0	0	0		CON__Q58D62	CON__Q58D62	CON__Q58D62	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8183898925781	2	509.268219	1016.52188	0.4684	0.00023854	-1.0292	-0.00052415	-0.56082	-0.00028561	509.2674990164511	70.6	0.48952	70.6	70.447	70.937	0					27	17	2	0	0	0	0.35042	1	16609	16609		19.439	0	1	101720		+	766	237	521	524	1018	1018					0.014284373257510197
AYFVEYLI	8	Unmodified	_AYFVEYLI_					0	0	0		CON__Q58D62	CON__Q58D62	CON__Q58D62	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.818359375	2	509.268219	1016.52188	0.55302	0.00028164	-0.8519	-0.00043385	-0.29888	-0.00015221	509.2674478642705	70.622	0.48708	70.682	70.425	70.912	0.060562					26	19	2	0	0	0	0.33972	1	16478	16478		26.341	1.6674	1	78782		+	767	237	521	524	1019	1019					0.014284373257510197
AYGASFLSF	9	Unmodified	_AYGASFLSF_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.73468017578125	2	481.734543	961.454533	0.5432	0.00026168	-0.20067	-9.6667E-05	0.34254	0.00016501	481.73433718566866	81.329	0.63195	81.329	81.114	81.746	0					51	21	3	0	0	0	1.1119E-05	3	19849	19849;19898;19952		147.83	72.07	1	711360			768	3734	522	525	1020;1021;1022	1020					-0.02773592885182552
AYGASFLSF	9	Unmodified	_AYGASFLSF_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.73455810546875	2	481.734543	961.454533	0.24014	0.00011568	0.13659	6.5799E-05	0.37673	0.00018148	481.7345054309708	81.319	0.68369	81.341	81.108	81.792	0.021866					59	24	3	0	0	0	4.1078E-06	3	19726	19677;19726;19772		154.46	68.822	1	1342500			769	3734	522	525	1023;1024;1025	1024					-0.02773592885182552
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.77099609375	2	506.771126	1011.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.979	1	87.979	87.479	88.479	0								0	0	0	6.0717E-05	1	21893	21893		92.822	41.967	1				770	1257	523	526	1026	1026					0.022395358374296848
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7710266113281	2	506.771126	1011.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.134	1	88.134	87.634	88.634	0								0	0	0	1.8843E-08	1	21940	21940		112.59	59.018	1				771	1257	523	526	1027	1027					0.022395358374296848
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.77117919921875	2	506.771126	1011.5277	0.26802	0.00013583	-0.21584	-0.00010938	0.052183	2.6445E-05	506.77087363260904	88.122	0.99082	88.152	87.686	88.677	0.030037					63	37	4	0	0	0	0.0042542	2	21732	21732;21783		100.37	48.103	1	1021000			772	1257	523	526	1028;1029	1028					0.022395358374296848
AYGEFLSRL	9	Unmodified	_AYGEFLSRL_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8084716796875	2	528.279649	1054.54475	0.35834	0.0001893	3.2569	0.0017206	3.6152	0.0019099	528.2794891540616	62.31	0.42316	62.31	62.124	62.547	0					29	15	3	0	0	0	0.16392	1	14081	14081		32.786	4.6125	1	152310			773	4068	524	527	1030	1030					0.0196545644323578
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.72149658203125	2	483.721436	965.428318	-0.13132	-6.3522E-05	0.20515	9.9236E-05	0.073833	3.5714E-05	483.72146119013684	73.759	0.37843	73.759	73.598	73.977	0					21	12	2	0	0	0	0.038949	1	17556	17556		45.75	34.11	1	158870			774	2347	525	528	1031	1031					-0.05577862056668437
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.72125244140625	2	483.721436	965.428318	0.086132	4.1664E-05	0.70115	0.00033916	0.78728	0.00038082	483.7214317131283	73.772	0.31584	73.824	73.621	73.937	0.052574					21	11	2	0	0	0	0.081567	1	17372	17372		36.466	17.027	1	130040			775	2347	525	528	1032	1032					-0.05577862056668437
AYGHFSYEF	9	Unmodified	_AYGHFSYEF_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7411499023438	2	560.740357	1119.46616	0.31809	0.00017837	0.9865	0.00055317	1.3046	0.00073154	560.7407556361137	56.322	2.1234	56.322	56.094	58.217	0					171	77	4	0	0	0	5.2351E-13	7	12255	12214;12255;12314;12363;12411;12477;12616		188.08	157.44	1	3857500			776	794	526	529	1033;1034;1035;1036;1037;1038;1039	1034					-0.08879395861845296
AYGHFSYEF	9	Unmodified	_AYGHFSYEF_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7410888671875	2	560.740357	1119.46616	0.31431	0.00017625	1.0537	0.00059086	1.368	0.0007671	560.740811159752	56.258	1.5444	56.325	56.122	57.667	0.066448					149	58	5	0	0	0	3.5265E-09	6	12099	12057;12099;12148;12202;12255;12304		170.55	139.91	1	4145300			777	794	526	529	1040;1041;1042;1043;1044;1045	1041					-0.08879395861845296
AYGITPLFVAA	11	Unmodified	_AYGITPLFVAA_					0	0	0		nc|ENSG00000100628|Q96Q27-1|ASB2;ASB2|p.E527Dfs*39|1|0.1|ENSG00000100628|chr14:93937744-93937744|T/-|frameshift_variant;ENSG00000100628|ENST00000555019|ASB2	nc|ENSG00000100628|Q96Q27-1|ASB2	nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8139038085938	2	561.813325	1121.6121	0.47552	0.00026716	-0.41169	-0.00023129	0.063836	3.5864E-05	561.8130649116819	93.93	0.75568	93.968	93.767	94.523	0.038086					59	35	2	0	0	0	0.37533	1	23666	23666		9.3831	3.6513	1	504270			778	58	527	530	1046	1046					0.056154866542101445
AYGLDFYIL	9	Unmodified	_AYGLDFYIL_					0	0	0		ENST00000481453.5_1_16:418974-419244:-|nuORF;ENST00000461550.5_1_16:418974-420218:-|nuORF;ENST00000483764.5_1_16:418974-420218:-|nuORF;ENSG00000086504|ENST00000199706|MRPL28	ENST00000481453.5_1_16:418974-419244:-|nuORF	ENST00000481453.5_1_16:418974-419244:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.779296875	2	537.778951	1073.54335	0.38131	0.00020506	0.56021	0.00030127	0.94152	0.00050633	537.7791100265426	96.149	0.49727	96.149	95.925	96.423	0					68	26	4	0	0	0	0.054458	1	24359	24359		57.471	23.369	1	1021500			779	977	528	531	1047	1047					0.009518223544773718
AYGLDFYIL	9	Unmodified	_AYGLDFYIL_					0	0	0		ENST00000481453.5_1_16:418974-419244:-|nuORF;ENST00000461550.5_1_16:418974-420218:-|nuORF;ENST00000483764.5_1_16:418974-420218:-|nuORF;ENSG00000086504|ENST00000199706|MRPL28	ENST00000481453.5_1_16:418974-419244:-|nuORF	ENST00000481453.5_1_16:418974-419244:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7793579101562	2	537.778951	1073.54335	0.5431	0.00029207	0.34775	0.00018701	0.89085	0.00047908	537.7790653831512	96.082	0.54568	96.121	95.891	96.437	0.039772					55	29	4	0	0	0	0.043667	1	24231	24231		60.39	28.084	1	1135200			780	977	528	531	1048	1048					0.009518223544773718
AYGLGKGRPI	10	Unmodified	_AYGLGKGRPI_					0	0	0			REV__AFG3L2|p.Q607R|1|0.09|ENSG00000141385|chr18:12340361-12340361|T/C|missense_variant	REV__AFG3L2|p.Q607R|1|0.09|ENSG00000141385|chr18:12340361-12340361|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7542114257812	2	516.303458	1030.59236	-0.53989	-0.00027875	0.0098589	5.0902E-06	-0.53003	-0.00027366	516.8050116423726	41.756	0.28936	41.756	41.594	41.884	0					13	10	2	0	0	0	0.31712	1	7852	7852		6.7232	1.4925	1	26893	+		781	7699	529	532	1049	1049					0.07829155434069435
AYGLVSATF	9	Unmodified	_AYGLVSATF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.7422790527344	2	464.742368	927.470183	0.55913	0.00025985	-0.44057	-0.00020475	0.11856	5.5099E-05	464.7419963248249	70.277	0.55025	70.277	70.067	70.618	0					49	20	3	0	0	0	0.011655	2	16452	16452;16503		64.236	22.397	1	677100			782	3640	530	533	1050;1051	1050					0.00354693631857117
AYGLVSATF	9	Unmodified	_AYGLVSATF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.74237060546875	2	464.742368	927.470183	0.27456	0.0001276	-0.20225	-9.3996E-05	0.072307	3.3604E-05	464.74219511178904	70.182	0.43079	70.242	70.046	70.477	0.060562					30	17	2	0	0	0	0.011655	2	16318	16268;16318		64.236	22.397	1	625760			783	3640	530	533	1052;1053	1053					0.00354693631857117
AYGLVSATF	9	Unmodified	_AYGLVSATF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.7424011230469	2	464.742368	927.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.449	1	70.51	70.01	71.01	0.060562								0	0	0	0.23884	1	16389	16389		11.64	0.81637	1				784	3640	530	533	1054	1054					0.00354693631857117
AYGNVFSAF	9	Unmodified	_AYGNVFSAF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.23223876953125	2	488.232168	974.449782	0.22522	0.00010996	0.029257	1.4284E-05	0.25448	0.00012424	488.23210747554384	76.255	0.77045	76.255	76.097	76.867	0					63	30	3	0	0	0	0.0042692	3	18340	18294;18340;18385		99.799	47.531	1	3237300			785	2705;13768	531	534	1055;1056;1057	1056					-0.03846477027957462
AYGNVFSAF	9	Unmodified	_AYGNVFSAF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.23236083984375	2	488.232168	974.449782	0.22498	0.00010984	0.062279	3.0407E-05	0.28726	0.00014025	488.2321087805537	76.262	0.5396	76.301	76.068	76.608	0.03923					53	23	3	0	0	0	0.0046499	3	18166	18118;18166;18216		85.272	47.298	1	2064500			786	2705;13768	531	534	1058;1059;1060	1059					-0.03846477027957462
AYGSFGAFLF	10	Unmodified	_AYGSFGAFLF_					0	0	0			REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1	REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7839965820312	2	540.263468	1078.51238	0.35478	0.00019168	-1.5782	-0.00085266	-1.2234	-0.00066098	540.2627780899447	56.423	0.80847	56.489	56.161	56.97	0.066448					57	29	4	0	0	0	0.43672	1	12139	12139		7.2892	0	1	135340	+		787	13129	532	535	1061	1061					-0.023733309597673724
AYGSLFNTI	9	Unmodified	_AYGSLFNTI_					0	0	0		nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.253662109375	2	493.2531	984.491647	0.49516	0.00024424	-0.22968	-0.00011329	0.26548	0.00013095	493.25291617616614	74.628	0.65855	74.628	74.4	75.058	0					47	24	3	0	0	0	0.0005281	3	17788	17788;17836;17892		131.27	67.031	1	659390			788	2880	533	536	1062;1063;1064	1062					-0.0012192133942789951
AYGSLFNTI	9	Unmodified	_AYGSLFNTI_					0	0	0		nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.25299072265625	2	493.2531	984.491647	0.46125	0.00022751	-0.26294	-0.0001297	0.19831	9.7815E-05	493.25288924427605	74.566	0.65983	74.614	74.369	75.028	0.048546					48	23	3	0	0	0	0.0005281	2	17678	17630;17678		131.27	67.031	1	526940			789	2880	533	536	1065;1066	1066					-0.0012192133942789951
AYGTVHYF	8	Unmodified	_AYGTVHYF_					0	0	0		ENST00000514938.1_1_22:50943733-50944613:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.74896240234375	2	479.226885	956.439217	-0.0076699	-3.6756E-06	-0.1474	-7.0639E-05	-0.15507	-7.4315E-05	479.2267555427151	46.794	0.45761	46.794	46.686	47.144	0					32	18	2	0	0	0	0.32689	1	9325	9325		34.187	7.8461	1	195050			790	1174	534	537	1067	1067					-0.04074459682385623
AYGTVHYF	8	Unmodified	_AYGTVHYF_					0	0	0		ENST00000514938.1_1_22:50943733-50944613:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.74896240234375	2	479.226885	956.439217	-0.046495	-2.2282E-05	0.21515	0.00010311	0.16866	8.0826E-05	479.2269418091923	46.677	0.38271	46.76	46.65	47.032	0.083096					29	18	3	0	0	0	0.22502	1	9188	9188		56.541	26.316	1	173820			791	1174	534	537	1068	1068					-0.04074459682385623
AYGVPVKPMT	10	Unmodified	_AYGVPVKPMT_					0	0	0		ENST00000507205.5_1_16:89759738-89759876:+|nuORF;ENST00000561477.1_1_16:89758247-89760641:+|nuORF;ENST00000505733.5_1_16:89758861-89762180:+|nuORF;nc|ENSG00000185324|Q15131-4|CDK10;nc|ENSG00000185324|Q15131-3|CDK10;nc|ENSG00000185324|Q15131-2|CDK10;ENSG00000185324|ENST00000353379|CDK10	ENST00000507205.5_1_16:89759738-89759876:+|nuORF	ENST00000507205.5_1_16:89759738-89759876:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.232666015625	2	531.786253	1061.55795	0.57892	0.00030786	-3.3638	-0.0017888	-2.7849	-0.0014809	531.7837414672481	77.962	0.64313	77.996	77.708	78.351	0.034485					42	21	3	0	0	0	0.31771	1	18604	18604		1.8442	0	1	158810			792	5020	535	538	1069	1069					0.029635712309755036
AYGWVSATF	9	Unmodified	_AYGWVSATF_					0	0	0		nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2404479980469	2	501.239993	1000.46543	0.41177	0.00020639	0.052818	2.6475E-05	0.46458	0.00023287	501.2399097450988	75.428	0.42686	75.428	75.225	75.652	0					38	16	3	0	0	0	0.0017019	1	18051	18051		117.6	91.257	1	454690			793	3349	536	539	1070	1070					-0.03478190510918466
AYGWVSATF	9	Unmodified	_AYGWVSATF_					0	0	0		nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2403564453125	2	501.239993	1000.46543	0.3739	0.00018741	0.046104	2.3109E-05	0.42	0.00021052	501.2399366589011	75.36	0.44152	75.404	75.209	75.65	0.044037					30	13	3	0	0	0	0.0043406	1	17888	17888		97.075	73.054	1	588000			794	3349	536	539	1071	1071					-0.03478190510918466
AYHEVPYTTSF	11	Unmodified	_AYHEVPYTTSF_					0	0	0		ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9	ENST00000556170.5_1_14:75553702-75572727:-|nuORF	ENST00000556170.5_1_14:75553702-75572727:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.8717956542969	3	438.871549	1313.59282	0.54851	0.00024072	-0.05434	-2.3848E-05	0.49417	0.00021688	438.87148629360473	74.588	0.56085	74.588	74.4	74.961	0					48	20	3	0	0	0	0.38806	2	17826	17826;17874		7.0371	1.1689	1	447150			795	2077	537	540	1072;1073	1072					-0.05143514427390983
AYHNSPAYL	9	Unmodified	_AYHNSPAYL_					0	0	0		ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF;nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|522|33.96|0.3|6.83|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.2484130859375	2	518.248349	1034.48214	0.27178	0.00014085	-0.10771	-5.5819E-05	0.16407	8.5029E-05	518.2482074341063	37.112	1.2898	37.197	36.97	38.26	0.084476					90	46	4	0	0	0	0.047633	1	6309	6309		43.858	18.459	1	593030			796	155	538	541	1074	1074					-0.03371689624964347
AYHNSPAYL	9	Unmodified	_AYHNSPAYL_					0	0	0		ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF;nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|522|33.96|0.3|6.83|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	518.248349	1034.48214	0.29859	0.00015474	-0.22085	-0.00011446	0.077735	4.0286E-05	518.2481685456639	37.205	1.7727	37.205	36.917	38.69	0	0.0040693	-4.7447E-05	NaN	43.858	123	63	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517210			797	155	538	541							-0.03371689624964347
AYIAIKDVKF	10	Unmodified	_AYIAIKDVKF_					0	0	0		tr|U7ST70|U7ST70_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01242PE=4SV=1	tr|U7ST70|U7ST70_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01242PE=4SV=1	tr|U7ST70|U7ST70_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01242PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2918090820312	2	584.342249	1166.66995	0.15795	9.2296E-05	-0.61833	-0.00036131	-0.46038	-0.00026902	584.3418433838033	72.273	0.24374	72.273	72.137	72.381	0					12	7	2	0	0	0	0.31616	1	17122	17122		10.074	0	1	58096			798	13570	539	542	1075	1075					0.09327748579607942
AYIAIKDVKF	10	Unmodified	_AYIAIKDVKF_					0	0	0		tr|U7ST70|U7ST70_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01242PE=4SV=1	tr|U7ST70|U7ST70_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01242PE=4SV=1	tr|U7ST70|U7ST70_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01242PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8441772460938	2	584.342249	1166.66995	0.46694	0.00027285	-0.24571	-0.00014358	0.22123	0.00012927	584.3416024811501	72.258	0.2784	72.314	72.152	72.43	0.055939					14	9	2	0	0	0	0.40223	1	16940	16940		11.64	3.047	1	67530			799	13570	539	542	1076	1076					0.09327748579607942
AYICMYVSGL	10	Unmodified	_AYICMYVSGL_					0	0	0			REV__ENST00000366645.1_1_1:231471248-231471314:-|nuORF	REV__ENST00000366645.1_1_1:231471248-231471314:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2645874023438	2	560.264296	1118.51404	0.45175	0.0002531	-0.09912	-5.5533E-05	0.35263	0.00019757	560.264372991057	82.16	0.83202	82.181	81.846	82.678	0.021866					102	29	5	0	0	0	0.083805	1	19977	19977		48.346	6.2513	1	2118200	+		800	11550	540	543	1077	1077					-0.04047781257668248
AYIDELWEM	9	Unmodified	_AYIDELWEM_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8140258789062	2	585.262807	1168.51106	0.70581	0.00041308	1.5954	0.00093374	2.3012	0.0013468	585.2639424050744	88.646	0.32477	88.679	88.578	88.903	0.032265					18	13	2	0	0	0	0.16944	1	21948	21948		30.637	16.73	1	42540			801	3194	541	544	1078	1078					-0.06645333110850515
AYIDFENAF	9	Unmodified	_AYIDFENAF_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1;nc|ENSG00000132436|Q6PIW4-2|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3170166015625	2	545.248015	1088.48148	0.62553	0.00034107	3.8464	0.0020973	4.472	0.0024383	545.2480505025958	85.506	0.86163	85.531	85.037	85.899	0.025177					72	34	4	0	0	0	0.1478	1	20972	20972		34.102	1.9855	1	301000			802	2573	542	545	1079	1079					-0.05922529064673654
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(73)NYI	0	0	1		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.7890014648438	2	594.789524	1187.56449	-0.24674	-0.00014676	-0.01516	-9.0173E-06	-0.2619	-0.00015578	594.7894855818753	44.83	1.375	44.83	44.606	45.981	0					115	48	5	0	0	0	0.0081278	2	8734	8734;8781		72.968	47.569	1	531780			803	416	543	546	1080;1081	1080		18			-0.02178535608322818
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(70)NYI	0	0	1		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.7897338867188	2	594.789524	1187.56449	0.15827	9.4136E-05	0.27976	0.0001664	0.43802	0.00026053	594.7896253618194	46.582	2.1781	46.582	45.808	47.986	0					151	88	2	0	0	0	0.0089808	4	9283	9242;9283;9336;9378		70.332	44.933	1	749520			804	416	543	546	1082;1083;1084;1085	1083		18			-0.02178535608322818
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(73)NYI	0	0	1		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.7894897460938	2	594.789524	1187.56449	-0.077234	-4.5938E-05	0.08534	5.0759E-05	0.0081056	4.8211E-06	594.7895170741376	44.767	1.1023	44.854	44.627	45.729	0.08754					70	41	3	0	0	0	0.0081278	1	8600	8600		72.968	47.569	1	472580			805	416	543	546	1086	1086		18			-0.02178535608322818
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(73)NYI	0	0	1		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.291015625	2	594.789524	1187.56449	0.082908	4.9313E-05	0.25913	0.00015413	0.34204	0.00020344	594.7896447384186	46.483	1.6581	46.568	46.032	47.691	0.085617					159	76	3	0	0	0	0.0081278	3	9102	9102;9143;9186		72.968	47.569	1	675930			806	416	543	546	1087;1088;1089	1087		18			-0.02178535608322818
AYIERMNYI	9	Unmodified	_AYIERMNYI_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7921752929688	2	586.792066	1171.56958	0.56404	0.00033098	-0.34607	-0.00020307	0.21797	0.0001279	586.791912110087	53.558	0.42502	53.558	53.335	53.76	0					53	16	4	0	0	0	0.020768	1	11456	11456		57.722	8.1947	1	661560			807	416	543	547	1090	1090					-0.009342317456912497
AYIERMNYI	9	Unmodified	_AYIERMNYI_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7919921875	2	586.792066	1171.56958	0.77163	0.00045279	-0.68272	-0.00040062	0.088909	5.2171E-05	586.7918018072772	53.535	0.40406	53.6	53.385	53.789	0.06543					63	19	5	0	0	0	0.020768	1	11309	11309		57.722	0.47288	1	648870			808	416	543	547	1091	1091					-0.009342317456912497
AYIKGGWIL	9	Unmodified	_AYIKGGWIL_					0	0	0		nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.79779052734375	2	510.797478	1019.5804	0.53795	0.00027478	-0.30948	-0.00015808	0.22847	0.0001167	510.79725920186394	64.571	0.59618	64.571	64.436	65.032	0					27	21	2	0	0	0	0.1182	1	14765	14765		28.487	12.64	1	108050			809	4271	544	548	1092	1092					0.07139538690910285
AYIKGGWIL	9	Unmodified	_AYIKGGWIL_					0	0	0		nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.79730224609375	2	510.797478	1019.5804	0.43534	0.00022237	0.1616	8.2547E-05	0.59694	0.00030492	510.79741189445053	64.498	0.34325	64.567	64.428	64.771	0.068909					19	12	2	0	0	0	0.25174	1	14578	14578		7.2892	2.0586	1	121680			810	4271	544	548	1093	1093					0.07139538690910285
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7948608398438	2	527.794601	1053.57465	0.26051	0.00013749	0.20521	0.00010831	0.46571	0.0002458	527.7946532049931	95.217	0.58626	95.217	94.974	95.56	0					86	25	5	0	0	0	1.3047E-05	3	24107	24062;24107;24157		146.01	71.611	1	2748700			811	931	545	549	1094;1095;1096	1095					0.05000395388583456
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.79443359375	2	527.794601	1053.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.631	1	95.631	95.131	96.131	0								0	0	0	0.078412	1	24216	24216		39.957	16.809	1				812	931	545	549	1097	1097					0.05000395388583456
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7948608398438	2	527.794601	1053.57465	0.17257	9.108E-05	0.29069	0.00015342	0.46326	0.0002445	527.7947009742833	95.239	0.97873	95.278	95.002	95.981	0.038872					101	44	5	0	0	0	8.2367E-09	3	23940	23896;23940;23985		161.89	69.072	1	2925500			813	931	545	549	1098;1099;1100	1099					0.05000395388583456
AYILGRINF	9	Unmodified	_AYILGRINF_					0	0	0		tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8062744140625	2	533.805834	1065.59712	0.60227	0.0003215	0.099477	5.3102E-05	0.70175	0.0003746	533.8058217215031	74.537	0.72131	74.585	74.369	75.09	0.048538					70	25	4	0	0	0	0.017037	2	17623	17623;17671		60.39	8.8995	1	849210			814	13443	546	550	1101;1102	1101					0.06694039576859723
AYINKVEEL	9	Unmodified	_AYINKVEEL_					0	0	0		ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	ENSG00000155368|ENST00000355857|DBI	ENSG00000155368|ENST00000355857|DBI	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7927856445312	2	539.792589	1077.57063	0.4095	0.00022104	-0.5028	-0.00027141	-0.093303	-5.0364E-05	539.7923064167417	47.75	0.66214	47.75	47.53	48.192	0					54	22	3	0	0	0	0.00043425	1	9608	9608		106.94	14.287	1	680930			815	3585	547	551	1103	1103					0.03494305894855643
AYINKVEEL	9	Unmodified	_AYINKVEEL_					0	0	0		ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	ENSG00000155368|ENST00000355857|DBI	ENSG00000155368|ENST00000355857|DBI	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7927856445312	2	539.792589	1077.57063	0.67467	0.00036418	-0.97265	-0.00052503	-0.29797	-0.00016084	539.7921341255724	47.644	0.52962	47.724	47.504	48.034	0.080032					54	20	4	0	0	0	0.003141	1	9450	9450		96.367	13.837	1	524690			816	3585	547	551	1104	1104					0.03494305894855643
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7951354980469	2	510.795466	1019.57638	0.18699	9.5513E-05	-0.40915	-0.00020899	-0.22216	-0.00011348	510.79515998465524	50.011	0.66585	50.011	49.794	50.46	0					59	23	3	0	0	0	0.0022565	2	10332	10286;10332		114.2	58.699	1	731070			817	2927	548	552	1105;1106	1106					0.06737449197191836
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7953186035156	2	510.795466	1019.57638	0.23584	0.00012047	-0.39528	-0.00020191	-0.15944	-8.1442E-05	510.795200563161	49.947	0.70901	50.02	49.791	50.5	0.07312					52	24	3	0	0	0	0.0050339	2	10186	10138;10186		82.529	38.671	1	579970			818	2927	548	552	1107;1108	1108					0.06737449197191836
AYIQEFQEF	9	Unmodified	_AYIQEFQEF_					0	0	0		ENST00000528308.1_1_11:7507082-7509735:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7743530273438	2	587.774396	1173.53424	0.14963	8.7946E-05	0.42259	0.00024839	0.57222	0.00033633	587.7744266312604	72.43	0.43428	72.43	72.228	72.662	0					32	14	3	0	0	0	0.012002	1	17134	17134		80.676	38.364	1	197270			819	4943	549	553	1109	1109					-0.045585710018713144
AYIQEFQEF	9	Unmodified	_AYIQEFQEF_					0	0	0		ENST00000528308.1_1_11:7507082-7509735:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.7737426757812	2	587.774396	1173.53424	0.43105	0.00025336	0.31887	0.00018742	0.74992	0.00044078	587.7741448052965	72.361	0.41929	72.417	72.207	72.627	0.055939					34	14	3	0	0	0	0.024248	1	16952	16952		55.235	19.622	1	341460			820	4943	549	553	1110	1110					-0.045585710018713144
AYIQESATF	9	Unmodified	_AYIQESATF_					0	0	0		ENSG00000116688|ENST00000235329|MFN2;ENST00000497302.1_1_1:12042112-12052340:+|nuORF	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2484130859375	2	515.248015	1028.48148	0.23137	0.00011921	0.4545	0.00023418	0.68587	0.00035339	515.2481650175544	56.71	0.48972	56.71	56.458	56.948	0					36	17	3	0	0	0	0.005983	1	12351	12351		79.596	45.195	1	143200			821	1967	550	554	1111	1111					-0.03162529064661612
AYIQESATF	9	Unmodified	_AYIQESATF_					0	0	0		ENSG00000116688|ENST00000235329|MFN2;ENST00000497302.1_1_1:12042112-12052340:+|nuORF	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2483520507812	2	515.248015	1028.48148	0.32075	0.00016527	0.53922	0.00027783	0.85997	0.0004431	515.2481091963658	56.654	0.39213	56.72	56.522	56.914	0.066452					25	13	3	0	0	0	0.0042703	1	12211	12211		99.755	63.628	1	162890			822	1967	550	554	1112	1112					-0.03162529064661612
AYISLYSYF	9	Unmodified	_AYISLYSYF_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3026123046875	2	563.776408	1125.53826	0.50826	0.00028654	-1.68	-0.00094717	-1.1718	-0.00066063	564.2762547113132	88.03	0.39668	88.03	87.948	88.345	0					18	14	2	0	0	0	0.010722	1	21908	21908		68.081	46.334	1	246020			823	1239	551	555	1113	1113					-0.01948481508156874
AYKDKDISFF	10	Unmodified	_AYKDKDISFF_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.5681457519531	3	411.876523	1232.60774	0.033989	1.3999E-05	0.059194	2.4381E-05	0.093184	3.838E-05	411.87656851458263	49.836	0.4116	49.909	49.686	50.097	0.07312					32	14	3	0	0	0	0.31705	1	10134	10134		8.4443	2.2525	1	123940			824	5630	552	556	1114	1114					0.0007397744061563571
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1;RNF217-TPD52L1|3|fusion;RNF217-TPD52L1|2|fusion;RNF217-TPD52L1|1|fusion	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7986450195312	2	545.798206	1089.58186	0.21336	0.00011645	0.73555	0.00040146	0.9489	0.00051791	545.7984858055739	17.117	0.36641	17.2	17.04	17.406	0.083694					109	45	3	0	0	0	0.22083	2	799	799;804		16.149	6.5031	1	59653			825	1736	553	557	1115;1116	1115					0.04065127988997119
AYKSEVVYF	9	Unmodified	_AYKSEVVYF_					0	0	0		ENST00000377653.2_1_9:39174468-39266986:-|nuORF;ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENST00000377653.2_1_9:39174468-39266986:-|nuORF	ENST00000377653.2_1_9:39174468-39266986:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2820434570312	2	553.281857	1104.54916	0.30302	0.00016766	-0.086379	-4.7792E-05	0.21664	0.00011986	553.281565255349	52.088	0.56568	52.088	51.83	52.396	0					43	19	3	0	0	0	0.048027	1	10944	10944		43.772	24.333	1	180130			826	1534	554	558	1117	1117					0.0010692086611925333
AYKSEVVYF	9	Unmodified	_AYKSEVVYF_					0	0	0		ENST00000377653.2_1_9:39174468-39266986:-|nuORF;ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENST00000377653.2_1_9:39174468-39266986:-|nuORF	ENST00000377653.2_1_9:39174468-39266986:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.282958984375	2	553.281857	1104.54916	0.4592	0.00025407	-0.13486	-7.4617E-05	0.32434	0.00017945	553.2814255838276	52.048	0.52261	52.115	51.89	52.412	0.067173					42	20	3	0	0	0	0.12214	1	10777	10777		27.629	8.1898	1	161230			827	1534	554	558	1118	1118					0.0010692086611925333
AYKYIQELW	9	Unmodified	_AYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.3170776367188	2	607.316232	1212.61791	0.89751	0.00054507	-0.35472	-0.00021543	0.5428	0.00032965	607.3158879969573	65.46	0.70909	65.46	65.253	65.962	0					59	25	3	0	0	0	0.15472	1	15111	15111		24.991	11.948	1	563340			828	4597	555	559	1119	1119					0.020105851658399843
AYKYIQELW	9	Unmodified	_AYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.8180541992188	2	607.316232	1212.61791	0.83129	0.00050486	-0.16387	-9.9518E-05	0.66743	0.00040534	607.3159191781233	65.433	0.71399	65.501	65.286	66	0.0681					59	27	3	0	0	0	0.23211	1	14877	14877		26.268	18.358	1	665750			829	4597	555	559	1120	1120					0.020105851658399843
AYLACLFPRF	10	Unmodified	_AYLACLFPRF_					0	0	0			REV__FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant	REV__FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8172607421875	2	600.815344	1199.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.116	1	99.159	98.659	99.659	0.042839								0	0	0	0.31427	1	25120	25120		15.847	2.8047	1		+		830	8500	556	560	1121	1121					0.024312528762266084
AYLAEPEEW	9	Unmodified	_AYLAEPEEW_					0	0	0			REV__ITSN2|p.R961W|1|0.38|ENSG00000198399|chr2:24257895-24257895|G/A|missense_variant	REV__ITSN2|p.R961W|1|0.38|ENSG00000198399|chr2:24257895-24257895|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8302612304688	2	554.253297	1106.49204	0.82967	0.00045985	-0.091061	-5.0471E-05	0.73861	0.00040938	554.2533521219837	85.513	0.66788	85.538	85.314	85.982	0.025169					53	26	3	0	0	0	0.15192	1	20950	20950		12.532	0	1	339650	+		831	12685	557	561	1122	1122					-0.056945464102454935
AYLALFLKL	9	Unmodified	_AYLALFLKL_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7807006835938	2	526.331153	1050.64775	0.55999	0.00029474	-0.66199	-0.00034842	-0.102	-5.3686E-05	526.3307140708163	83.731	0.44334	83.731	83.519	83.962	0					18	14	3	0	0	0	0.24263	1	20601	20601		12.532	3.1484	1	180160			832	2705	558	562	1123	1123					0.12445568901830484
AYLALFLKL	9	Unmodified	_AYLALFLKL_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.78076171875	2	526.331153	1050.64775	0.17516	9.2192E-05	-0.1706	-8.9794E-05	0.0045546	2.3972E-06	526.3308899735329	83.715	0.27863	83.737	83.56	83.838	0.021744					22	9	3	0	0	0	0.164	1	20426	20426		30.225	17.182	1	230550			833	2705	558	562	1124	1124					0.12445568901830484
AYLAQSPQL	9	Unmodified	_AYLAQSPQL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7668762207031	2	495.766374	989.518196	0.31024	0.00015381	0.21597	0.00010707	0.52622	0.00026088	495.7664349769412	56.689	0.46206	56.689	56.512	56.974	0					30	16	2	0	0	0	0.16392	1	12407	12407		22.736	3.4793	1	230340			834	1926	559	563	1125	1125					0.023017675519099612
AYLAQSPQL	9	Unmodified	_AYLAQSPQL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.76666259765625	2	495.766374	989.518196	0.39113	0.00019391	-0.054153	-2.6847E-05	0.33697	0.00016706	495.76640942589466	56.645	0.44778	56.712	56.522	56.97	0.066452					24	15	2	0	0	0	0.11198	1	12229	12229		29.841	16.798	1	170250			835	1926	559	563	1126	1126					0.023017675519099612
AYLCVQVQIE	10	Unmodified	_AYLCVQVQIE_					0	0	0			REV__nc|ENSG00000105486|P18858-2|LIG1	REV__nc|ENSG00000105486|P18858-2|LIG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2897338867188	2	583.299724	1164.5849	0.52656	0.00030714	-1.7083	-0.00099643	-1.1817	-0.00068929	583.2976831393607	68.995	0.42435	69.057	68.718	69.142	0.062126					30	15	3	0	0	0	0.35264	1	15943	15943		16.942	2.5369	1	245230	+		836	8542	560	564	1127	1127					0.009186350514937658
AYLDALQTL	9	Unmodified	_AYLDALQTL_					0	0	0		ENST00000487070.5_1_2:97281260-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-7|KANSL3;nc|ENSG00000114982|Q9P2N6-8|KANSL3;ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3	ENST00000487070.5_1_2:97281260-97297069:-|nuORF	ENST00000487070.5_1_2:97281260-97297069:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2738952636719	2	504.274032	1006.53351	0.22419	0.00011305	0.35288	0.00017795	0.57708	0.000291	504.2740865340745	77.423	0.32639	77.423	77.28	77.606	0					24	16	2	0	0	0	0.0045224	1	18688	18688		90.135	44.114	1	206130			837	1868	561	565	1128	1128					0.030506343490856125
AYLDALQTL	9	Unmodified	_AYLDALQTL_					0	0	0		ENST00000487070.5_1_2:97281260-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-7|KANSL3;nc|ENSG00000114982|Q9P2N6-8|KANSL3;ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3	ENST00000487070.5_1_2:97281260-97297069:-|nuORF	ENST00000487070.5_1_2:97281260-97297069:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2739562988281	2	504.274032	1006.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.451	1	77.485	76.985	77.985	0.034485								0	0	0	0.0040281	1	18529	18529		76.825	38.649	1				838	1868	561	565	1129	1129					0.030506343490856125
AYLDKISEL	9	Unmodified	_AYLDKISEL_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2874755859375	2	526.28714	1050.55973	-0.12562	-6.611E-05	0.49434	0.00026016	0.36872	0.00019405	526.2874384257005	58.606	0.37224	58.606	58.473	58.846	0					25	12	3	0	0	0	0.12515	1	12938	12938		27.223	5.6863	1	120060			839	3488	562	566	1130	1130					0.03646903520575506
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENST00000513447.1_1_5:54569247-54572159:-|nuORF;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENSG00000067248|ENST00000251636|DHX29	ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENST00000513447.1_1_5:54569247-54572159:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7716064453125	2	534.771657	1067.52876	0.48991	0.00026199	-0.05031	-2.6904E-05	0.4396	0.00023509	534.7714586544901	46.822	0.67546	46.906	46.65	47.325	0.083096					65	29	3	0	0	0	0.0056336	1	9213	9213		80.676	42.5	1	405710			840	712	563	567	1131	1131					-0.0023024979368528875
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENST00000513447.1_1_5:54569247-54572159:-|nuORF;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENSG00000067248|ENST00000251636|DHX29	ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENST00000513447.1_1_5:54569247-54572159:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	534.771657	1067.52876	0.34524	0.00018462	0.033907	1.8133E-05	0.37915	0.00020276	534.7714665277828	46.888	0.63449	46.888	46.686	47.321	0	-0.0085317	4.6453E-05	NaN	80.676	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469030			841	712	563	567							-0.0023024979368528875
AYLDLEATL	9	Unmodified	_AYLDLEATL_					0	0	0		FHOD3-MOCOS|1|fusion;ENST00000589114.5_1_18:33877702-34289359:+|nuORF;nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3	FHOD3-MOCOS|1|fusion	FHOD3-MOCOS|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.24395751953125	2	504.76604	1007.51753	0.33948	0.00017136	0.2766	0.00013962	0.61607	0.00031097	504.7662062865511	74.676	0.52104	74.725	74.45	74.972	0.048546					25	18	2	0	0	0	0.2298	1	17655	17655		16.942	1.0951	1	160820			842	2689	564	568	1132	1132					0.014069281121805943
AYLDLQQI	8	Unmodified	_AYLDLQQI_					0	0	0		ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2604064941406	2	482.260925	962.507297	-0.46527	-0.00022438	-0.075152	-3.6243E-05	-0.54042	-0.00026062	482.26077658917796	45.53	0.66938	45.53	45.205	45.874	0					53	22	3	0	0	0	0.53118	1	8920	8920		7.2892	0.56607	1	166940			843	6508	565	569	1133	1133					0.02454365177618456
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7534790039062	2	540.753464	1079.49238	0.2098	0.00011345	0.1253	6.7759E-05	0.33511	0.00018121	540.7534642091965	46.531	2.0399	46.531	46.184	48.224	0					160	83	3	0	0	0	0.00070411	1	9231	9231		128.37	82.344	1	3859700			844	1710	566	570	1134	1134					-0.0441912669039084
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.753662109375	2	540.753464	1079.49238	0.27899	0.00015086	0.10377	5.6111E-05	0.38276	0.00020698	540.7534707093149	46.428	1.0558	46.514	46.215	47.271	0.085617					132	52	3	0	0	0	2.3187E-06	3	9113	9075;9113;9144		156.16	110.13	1	3348400			845	1710	566	570	1135;1136;1137	1136					-0.0441912669039084
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2717895507812	2	539.271824	1076.5291	0.40769	0.00021986	-0.20623	-0.00011122	0.20146	0.00010864	539.2716901803616	57.195	0.96474	57.195	56.916	57.881	0					101	33	5	0	0	0	1.1935E-05	2	12519	12475;12519		147.06	103.2	1	3147200			846	545	567	571	1138;1139	1139					-0.006108300738333128
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2719116210938	2	539.271824	1076.5291	0.57699	0.00031115	-0.28834	-0.00015549	0.28864	0.00015566	539.2716414825593	57.132	0.83559	57.2	56.916	57.752	0.068375					102	31	5	0	0	0	1.1935E-05	2	12375	12325;12375		147.06	107.1	1	2616100			847	545	567	571	1140;1141	1141					-0.006108300738333128
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2794799804688	2	567.279315	1132.54408	0.46737	0.00026513	0.27618	0.00015667	0.74356	0.0004218	567.2792017084973	55.271	0.62259	55.271	55.04	55.662	0					60	22	3	0	0	0	0.00021732	2	11909	11909;11961		136.39	73.819	1	867140			848	2953	568	572	1142;1143	1142					-0.01689382996482891
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2793579101562	2	567.279315	1132.54408	0.44204	0.00025076	0.11538	6.5453E-05	0.55742	0.00031621	567.2791341325761	55.241	0.64127	55.306	55.089	55.73	0.065132					57	23	3	0	0	0	0.0028522	3	11758	11758;11792;11799		110.55	64.853	1	780000			849	2953	568	572	1144;1145;1146	1144					-0.01689382996482891
AYLEQLESL	9	Unmodified	_AYLEQLESL_					0	0	0		KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2780151367188	2	533.276772	1064.53899	0.42705	0.00022774	1.0932	0.00058296	1.5202	0.00081069	533.2772790777319	74.539	0.45516	74.539	74.341	74.796	0					38	16	3	0	0	0	0.0011184	1	17777	17777		121.53	29.043	1	479680			850	797	569	573	1147	1147					0.009303131409069465
AYLEQLESL	9	Unmodified	_AYLEQLESL_					0	0	0		KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.767822265625	2	533.276772	1064.53899	0.58422	0.00031155	0.84599	0.00045115	1.4302	0.0007627	533.2770517176508	74.497	0.44577	74.546	74.342	74.788	0.048546					39	15	3	0	0	0	0.063168	1	17608	17608		59.368	11.62	1	445680			851	797	569	573	1148	1148					0.009303131409069465
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2899169921875	2	584.289682	1166.56481	0.59583	0.00034814	-0.062473	-3.6502E-05	0.53336	0.00031164	584.2899599318285	67.725	3.1787	67.725	67.213	70.391	0					325	118	5	0	0	0	2.973E-13	16	15853	15665;15669;15714;15761;15802;15853;15902;15944;15990;16029;16168;16216;16268;16323;16350;16359		191.38	121.05	1	37243000			852	3738	570	574	1149;1150;1151;1152;1153;1154;1155;1156;1157;1158;1159;1160;1161;1162;1163;1164	1154					-0.011807926168103222
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2901611328125	2	584.289682	1166.56481	0.89976	0.00052572	-0.39835	-0.00023275	0.50141	0.00029297	584.2897453703822	67.683	3.1924	67.747	67.347	70.539	0.063507					360	120	5	0	0	0	1.0594E-10	17	15636	15497;15550;15593;15636;15679;15723;15767;15810;15857;15986;16037;16084;16138;16168;16185;16272;16315		176.84	106.51	1	44268000			853	3738	570	574	1165;1166;1167;1168;1169;1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180;1181	1168					-0.011807926168103222
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.289794921875	2	584.289682	1166.56481	0.87375	0.00051052	0.23521	0.00013743	1.109	0.00064795	584.2898401276284	70.83	1.2899	70.888	70.39	71.68	0.058586					64	48	3	0	0	0	0.017478	1	16578	16578		60.074	32.445	1	231790			854	3738	570	574	1182	1182					-0.011807926168103222
AYLFLQSTF	9	Unmodified	_AYLFLQSTF_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3173217773438	2	545.2844	1088.55425	0.28986	0.00015806	0.6485	0.00035362	0.93836	0.00051167	545.2846549228931	86.051	0.43444	86.051	85.879	86.313	0					38	16	3	0	0	0	0.089428	1	21319	21319		47.749	28.492	1	199340			855	2350	571	575	1183	1183					0.013512247287508217
AYLFLQSTF	9	Unmodified	_AYLFLQSTF_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3169555664062	2	545.2844	1088.55425	0.43669	0.00023812	0.67517	0.00036816	1.1119	0.00060628	545.2845469207679	86.031	0.48857	86.057	85.899	86.387	0.025169					37	16	3	0	0	0	0.064501	1	21149	21149		39.95	26.044	1	247270			856	2350	571	575	1184	1184					0.013512247287508217
AYLFQLRLF	9	Unmodified	_AYLFQLRLF_					0	0	0		nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	nc|ENSG00000149547|O14681-3|EI24	nc|ENSG00000149547|O14681-3|EI24	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2401123046875	2	585.837134	1169.65972	0.80105	0.00046928	-1.3944	-0.00081689	-0.59335	-0.00034761	585.8361216537012	86.059	0.35913	86.084	85.899	86.258	0.025169					23	12	2	0	0	0	0.25416	1	21099	21099		5.2307	0	1	259400			857	3409	572	576	1185	1185					0.08167185645015707
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7632446289062	2	527.763832	1053.51311	-0.22278	-0.00011757	-0.033544	-1.7703E-05	-0.25632	-0.00013528	527.7636722273417	45.15	0.61794	45.15	44.968	45.586	0					57	21	4	0	0	0	0.0099477	2	8833	8833;8883		67.344	50.402	1	302150			858	1611	573	577	1186;1187	1186					-0.011505363107289668
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7636108398438	2	527.763832	1053.51311	0.0053894	2.8443E-06	-0.021663	-1.1433E-05	-0.016273	-8.5884E-06	527.7637588432777	45.075	0.59252	45.163	44.988	45.581	0.08754					53	22	4	0	0	0	0.021119	1	8683	8683		57.471	38.214	1	280620			859	1611	573	577	1188	1188					-0.011505363107289668
AYLKAIVLF	9	Unmodified	_AYLKAIVLF_					0	0	0		ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000177463|P49116-2|NR2C2	ENST00000552484.1_1_12:95422157-95422295:-|nuORF	ENST00000552484.1_1_12:95422157-95422295:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.32373046875	2	519.323328	1036.6321	0.17861	9.2759E-05	0.034151	1.7736E-05	0.21277	0.00011049	519.3235016937773	73.742	1.4735	73.742	73.487	74.961	0					153	53	5	0	0	0	0.004452	5	17554	17511;17554;17598;17653;17705		92.822	56.87	1	14104000			860	2134	574	578	1189;1190;1191;1192;1193	1190					0.11525282384764068
AYLKAIVLF	9	Unmodified	_AYLKAIVLF_					0	0	0		ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000177463|P49116-2|NR2C2	ENST00000552484.1_1_12:95422157-95422295:-|nuORF	ENST00000552484.1_1_12:95422157-95422295:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.3234252929688	2	519.323328	1036.6321	0.33049	0.00017163	-0.14126	-7.336E-05	0.18923	9.8271E-05	519.3234057704874	73.68	1.3103	73.733	73.482	74.792	0.052574					158	47	5	0	0	0	0.0046476	4	17338	17338;17388;17433;17534		85.357	56.87	1	11129000			861	2134	574	578	1194;1195;1196;1197	1194					0.11525282384764068
AYLKEVEQL	9	Unmodified	_AYLKEVEQL_					0	0	0		ENST00000476672.1_1_3:180675662-180688154:+|nuORF;nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000476672.1_1_3:180675662-180688154:+|nuORF	ENST00000476672.1_1_3:180675662-180688154:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2224731445312	2	546.800414	1091.58628	0.20095	0.00010988	-0.26982	-0.00014754	-0.068872	-3.7659E-05	546.8000603925709	50.986	0.53291	50.986	50.762	51.295	0					25	16	2	0	0	0	0.1076	1	10607	10607		45.74	8.6652	1	180490			862	1844	575	579	1198	1198					0.04414592411899321
AYLKEVEQL	9	Unmodified	_AYLKEVEQL_					0	0	0		ENST00000476672.1_1_3:180675662-180688154:+|nuORF;nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000476672.1_1_3:180675662-180688154:+|nuORF	ENST00000476672.1_1_3:180675662-180688154:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2223510742188	2	546.800414	1091.58628	0.31324	0.00017128	-0.12851	-7.027E-05	0.18473	0.00010101	546.8001807420097	50.926	0.41777	50.996	50.792	51.21	0.069878					33	15	3	0	0	0	0.14884	1	10444	10444		36.506	3.0613	1	179290			863	1844	575	579	1199	1199					0.04414592411899321
AYLKFLDQF	9	Unmodified	_AYLKFLDQF_					0	0	0		nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8060913085938	2	572.8055	1143.59645	0.12146	6.9575E-05	0.86565	0.00049585	0.98711	0.00056542	572.8058728060901	73.756	0.7726	73.756	73.515	74.287	0					75	27	4	0	0	0	7.3095E-13	4	17571	17527;17571;17618;17673		185.05	108.23	1	2087500			864	5876	576	580	1200;1201;1202;1203	1201					0.03039200137118314
AYLKFLDQF	9	Unmodified	_AYLKFLDQF_					0	0	0		nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.805908203125	2	572.8055	1143.59645	0.34022	0.00019488	0.60872	0.00034868	0.94894	0.00054356	572.8057362496764	73.719	0.83179	73.772	73.541	74.373	0.052574					85	30	4	0	0	0	1.8205E-09	2	17404	17357;17404		173.69	113.61	1	1898400			865	5876	576	580	1204;1205	1205					0.03039200137118314
AYLLGCVSHLE	11	Unmodified	_AYLLGCVSHLE_					0	0	0		ENST00000494909.5_1_2:114398284-114398608:+|nuORF	ENST00000494909.5_1_2:114398284-114398608:+|nuORF	ENST00000494909.5_1_2:114398284-114398608:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.788818359375	2	602.805174	1203.59579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.378	1	95.417	94.917	95.917	0.038872								0	0	0	0.30512	1	23982	23982		13.042	0.80181	1				866	6830	577	581	1206	1206					0.002140374257805888
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.8038330078125	2	535.803291	1069.59203	0.80754	0.00043268	0.088403	4.7367E-05	0.89594	0.00048005	535.8031245773326	66.082	0.9277	66.082	65.879	66.807	0					81	34	4	0	0	0	1.1297E-12	2	15212	15212;15256		179.23	74.431	1	1348400			867	709	578	582	1207;1208	1207					0.06001735714221468
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.8037719726562	2	535.803291	1069.59203	0.8278	0.00044354	0.010351	5.5462E-06	0.83815	0.00044908	535.803122155915	66.035	0.77518	66.101	65.895	66.67	0.066872					78	29	4	0	0	0	1.1297E-12	2	15046	15046;15098		179.23	74.431	1	1059900			868	709	578	582	1209;1210	1209					0.06001735714221468
AYLLTLGKF	9	Unmodified	_AYLLTLGKF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.78466796875	2	513.305136	1024.59572	0.54057	0.00027748	-0.45565	-0.00023389	0.084923	4.3592E-05	513.3048218707648	69.332	0.36825	69.332	69.239	69.608	0					20	12	2	0	0	0	0.01961	1	16209	16209		72.968	0	1	200550			869	611	579	583	1211	1211					0.08440405488067881
AYLLTLGKF	9	Unmodified	_AYLLTLGKF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.305908203125	2	513.305136	1024.59572	0.2431	0.00012479	-0.046261	-2.3746E-05	0.19684	0.00010104	513.3051322491848	69.264	0.5712	69.326	69.211	69.782	0.062126					27	20	2	0	0	0	0.029291	1	16050	16050		51.63	0	1	248710			870	611	579	583	1212	1212					0.08440405488067881
AYLLYSLHL	9	Unmodified	_AYLLYSLHL_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8082885742188	2	546.808042	1091.60153	0.43652	0.00023869	0.1099	6.0092E-05	0.54642	0.00029879	546.8081281418863	75.439	0.79943	75.439	75.199	75.998	0					109	42	5	0	0	0	1.1297E-12	5	18039	18039;18085;18123;18172;18214		179.23	128.37	1	10790000			871	762	580	584	1213;1214;1215;1216;1217	1213					0.059395039997752974
AYLLYSLHL	9	Unmodified	_AYLLYSLHL_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8087768554688	2	546.808042	1091.60153	0.38448	0.00021024	0.31718	0.00017344	0.70166	0.00038368	546.8082108871615	76.088	1.1966	76.088	76.007	77.204	0					70	50	2	0	0	0	0.0099477	3	18337	18288;18337;18396		67.344	48.087	1	645030			872	762	580	584	1218;1219;1220	1219					0.059395039997752974
AYLLYSLHL	9	Unmodified	_AYLLYSLHL_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8084716796875	2	546.808042	1091.60153	0.40417	0.000221	0.18445	0.00010086	0.58862	0.00032186	546.8081525684796	75.439	0.91055	75.483	75.19	76.1	0.044037					106	49	5	0	0	0	1.1297E-12	5	17920	17871;17920;17969;18010;18062		179.23	121.76	1	7436800			873	762	580	584	1221;1222;1223;1224;1225	1222					0.059395039997752974
AYLLYSLHL	9	Unmodified	_AYLLYSLHL_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.808349609375	2	546.808042	1091.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.197	1	76.236	75.736	76.736	0.03923								0	0	0	0.03014	1	18144	18144		57.471	35.725	1				874	762	580	584	1226	1226					0.059395039997752974
AYLLYSLHL	9	Unmodified	_AYLLYSLHL_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8085327148438	2	546.808042	1091.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.46	1	76.5	76	77	0.03923								0	0	0	0.064142	1	18225	18225		44.407	22.66	1				875	762	580	584	1227	1227					0.059395039997752974
AYLLYSLHL	9	Unmodified	_AYLLYSLHL_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.807861328125	2	546.808042	1091.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.683	1	76.722	76.222	77.222	0.03923								0	0	0	0.071558	1	18293	18293		42.095	20.348	1				876	762	580	584	1228	1228					0.059395039997752974
AYLPEWKENI	10	Unmodified	_AYLPEWKENI_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.325927734375	2	631.824421	1261.63429	0.26476	0.00016728	0.2112	0.00013344	0.47596	0.00030072	632.3258603652065	60.874	0.35579	60.874	60.779	61.135	0					21	12	2	0	0	0	0.22608	1	13639	13639		30.703	17.661	1	214370			877	5365	581	585	1229	1229					0.01393666331955501
AYLPEWKENI	10	Unmodified	_AYLPEWKENI_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.82421875	2	631.824421	1261.63429	0.23435	0.00014807	-0.43597	-0.00027546	-0.20162	-0.00012739	631.8240904144187	60.805	0.33577	60.879	60.774	61.11	0.073421					21	11	2	0	0	0	0.30966	1	13497	13497		21.537	6.2885	1	196110			878	5365	581	585	1230	1230					0.01393666331955501
AYLPKILQI	9	Unmodified	_AYLPKILQI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.834228515625	2	529.83406	1057.65357	0.43607	0.00023105	0.18752	9.9356E-05	0.62359	0.0003304	529.8340454561276	71.172	0.78178	71.172	70.888	71.669	0					73	26	4	0	0	0	0.0032694	3	16790	16742;16790;16835		108	0	1	1715300			879	2135	582	586	1231;1232;1233	1232					0.12704667413527204
AYLPKILQI	9	Unmodified	_AYLPKILQI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.8341674804688	2	529.83406	1057.65357	0.5486	0.00029067	0.021131	1.1196E-05	0.56973	0.00030186	529.8339688645735	71.09	0.77003	71.149	70.91	71.68	0.058578					75	27	4	0	0	0	0.0042542	3	16601	16555;16601;16653		100.37	0	1	1746600			880	2135	582	586	1234;1235;1236	1235					0.12704667413527204
AYLPVNESF	9	Unmodified	_AYLPVNESF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.2586059570312	2	520.258382	1038.50221	0.40119	0.00020872	-0.10635	-5.5331E-05	0.29484	0.00015339	520.2583590496688	68.115	1.2749	68.115	67.857	69.132	0					112	46	4	0	0	0	1.2541E-09	2	15860	15812;15860		174.73	92.837	1	3032100			881	4222	583	587	1237;1238	1238					-0.015499386850024166
AYLPVNESF	9	Unmodified	_AYLPVNESF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2586059570312	2	520.258382	1038.50221	0.44769	0.00023292	-0.12632	-6.5721E-05	0.32137	0.0001672	520.258341477381	68.108	1.0426	68.172	67.904	68.946	0.063507					118	39	4	0	0	0	8.9867E-09	2	15680	15680;15725		160.52	88.594	1	3114800			882	4222	583	587	1239;1240	1239					-0.015499386850024166
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.303466796875	2	622.303321	1242.59209	0.099245	6.1761E-05	0.33	0.00020536	0.42924	0.00026712	622.3034902431126	83.114	0.67962	83.114	82.9	83.58	0					71	22	4	0	0	0	2.6443E-08	3	20434	20434;20516;20528		159.1	138.69	1	2236600			883	4222	584	588	1241;1242;1243	1241					-0.01950309076460144
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3035888671875	2	622.303321	1242.59209	0.092264	5.7416E-05	0.4211	0.00026205	0.51336	0.00031947	622.30350493615	83.124	0.71168	83.146	82.877	83.589	0.021744					80	24	5	0	0	0	4.8247E-14	2	20263	20263;20308		184.36	162.82	1	1609400			884	4222	584	588	1244;1245	1244					-0.01950309076460144
AYLQLLNLF	9	Unmodified	_AYLQLLNLF_					0	0	0		ENST00000466901.5_1_2:232653280-232656595:+|nuORF;ENSG00000144524|ENST00000350033|COPS7B;nc|ENSG00000144524|Q9H9Q2-3|COPS7B	ENST00000466901.5_1_2:232653280-232656595:+|nuORF	ENST00000466901.5_1_2:232653280-232656595:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8161010742188	2	547.815867	1093.61718	0.28465	0.00015594	0.15651	8.5736E-05	0.44116	0.00024167	547.8159038770043	102.87	0.67492	102.87	102.69	103.37	0					108	47	4	0	0	0	0.0042542	2	26433	26433;26473		100.37	42.65	1	619340			885	3214	585	589	1246;1247	1246					0.07411790516789551
AYLQLLNLF	9	Unmodified	_AYLQLLNLF_					0	0	0		ENST00000466901.5_1_2:232653280-232656595:+|nuORF;ENSG00000144524|ENST00000350033|COPS7B;nc|ENSG00000144524|Q9H9Q2-3|COPS7B	ENST00000466901.5_1_2:232653280-232656595:+|nuORF	ENST00000466901.5_1_2:232653280-232656595:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.8160400390625	2	547.815867	1093.61718	0.46208	0.00025313	0.060612	3.3204E-05	0.52269	0.00028634	547.815808286614	102.8	0.62079	102.85	102.67	103.29	0.040916					116	53	3	0	0	0	0.00087032	3	26235	26197;26235;26275		125.62	49.864	1	641460			886	3214	585	589	1248;1249;1250	1249					0.07411790516789551
AYLSGMLRF	9	Oxidation (M)	_AYLSGM(Oxidation (M))LRF_		AYLSGM(1)LRF		AYLSGM(110)LRF	0	0	1		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2763061523438	2	537.276052	1072.53755	0.49129	0.00026396	0.0052355	2.8129E-06	0.49652	0.00026677	537.2761095703661	60.628	1.2958	60.628	60.152	61.447	0					112	46	3	0	0	0	0.0028323	1	13594	13594		110.67	66.268	1	526510			887	4238	586	590	1251	1251		255			0.004184005711522332
AYLSGMLRF	9	Oxidation (M)	_AYLSGM(Oxidation (M))LRF_		AYLSGM(1)LRF		AYLSGM(83)LRF	0	0	1		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.276123046875	2	537.276052	1072.53755	0.43837	0.00023553	-0.090402	-4.8571E-05	0.34797	0.00018696	537.2759607074631	60.548	1.331	60.622	60.155	61.486	0.073421					110	47	3	0	0	0	0.0050339	2	13363	13363;13416		82.529	49.744	1	501030			888	4238	586	590	1252;1253	1252		255			0.004184005711522332
AYLSGMLRF	9	Unmodified	_AYLSGMLRF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2785034179688	2	529.278595	1056.54264	0.44286	0.00023439	-0.27559	-0.00014587	0.16726	8.8528E-05	529.278322045855	68.604	0.66854	68.604	68.377	69.045	0					46	24	3	0	0	0	0.12752	1	15949	15949		39.95	24.181	1	234410			889	4238	586	591	1254	1254					0.016627044337838015
AYLSGMLRF	9	Unmodified	_AYLSGMLRF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2783203125	2	529.278595	1056.54264	0.37825	0.0002002	0.11437	6.0533E-05	0.49262	0.00026073	529.2785696028643	68.538	0.53844	68.601	68.408	68.946	0.063507					36	20	2	0	0	0	0.0044564	1	15793	15793		92.653	56.526	1	305910			890	4238	586	591	1255	1255					0.016627044337838015
AYLSIWTEL	9	Unmodified	_AYLSIWTEL_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2899169921875	2	548.289682	1094.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.407	1	91.407	90.907	91.907	0								0	0	0	0.035211	1	22932	22932		54.774	34.32	1				891	2520	587	592	1256	1256					0.021312073831722955
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(90)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.267822265625	2	521.267893	1040.52123	-0.29564	-0.00015411	-0.021615	-1.1267E-05	-0.31726	-0.00016538	521.2677951573164	40.638	0.89804	40.638	40.456	41.354	0					49	31	2	0	0	0	0.0045224	1	7485	7485		90.135	48.295	1	269580			892	2273	588	593	1257	1257		138			0.0025927461438186583
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(62)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2673950195312	2	521.267893	1040.52123	-0.19091	-9.9516E-05	2.6794	0.0013967	2.4884	0.0012971	521.2693315037715	43.012	2.2987	43.012	42.03	44.329	0					158	80	3	0	0	0	0.015341	1	8180	8180		61.602	27.2	1	213890			893	2273	588	593	1258	1258		138			0.0025927461438186583
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(72)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.267822265625	2	521.267893	1040.52123	-0.20237	-0.00010549	0.16663	8.6859E-05	-0.035738	-1.8629E-05	521.2679447428305	40.508	0.78202	40.597	40.458	41.24	0.089645					44	30	2	0	0	0	0.0085356	1	7323	7323		71.708	37.306	1	218550			894	2273	588	593	1259	1259		138			0.0025927461438186583
AYLSRRLAYF	10	Unmodified	_AYLSRRLAYF_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-2|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.56787109375	3	420.568024	1258.68224	0.11574	4.8675E-05	0.034211	1.4388E-05	0.14995	6.3063E-05	420.56785872901855	50.788	0.38279	50.858	50.666	51.049	0.069874					34	14	3	0	0	0	0.34403	1	10436	10436		17.863	10.386	1	113320			895	4987;3231	589	594	1260	1260					0.0632478504262508
AYLTELAIF	9	Unmodified	_AYLTELAIF_					0	0	0		ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL	ENSG00000120334|ENST00000682279|CENPL	ENSG00000120334|ENST00000682279|CENPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.3026123046875	2	520.786776	1039.559	0.42307	0.00022033	0.23812	0.00012401	0.66119	0.00034434	520.7867784850114	91.387	0.31499	91.387	91.269	91.584	0					16	11	2	0	0	0	0.1182	1	22945	22945		28.487	5.3384	1	121630			896	2119	590	595	1261	1261					0.040801088714943035
AYLVNTYAL	9	Unmodified	_AYLVNTYAL_					0	0	0		ENST00000534074.5_1_11:47640387-47650630:-|nuORF;ENSG00000109919|ENST00000302503|MTCH2	ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENST00000534074.5_1_11:47640387-47650630:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2765502929688	2	514.276575	1026.5386	0.51266	0.00026365	0.0045604	2.3453E-06	0.51722	0.00026599	514.2764767212784	70.949	0.58895	70.949	70.708	71.297	0					43	20	3	0	0	0	0.0040275	2	16718	16668;16718		103.35	51.453	1	653000			897	1644	591	596	1262;1263	1263					0.026389382117031346
AYLVNTYAL	9	Unmodified	_AYLVNTYAL_					0	0	0		ENST00000534074.5_1_11:47640387-47650630:-|nuORF;ENSG00000109919|ENST00000302503|MTCH2	ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENST00000534074.5_1_11:47640387-47650630:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.276611328125	2	514.276575	1026.5386	0.64684	0.00033265	-0.24502	-0.00012601	0.40182	0.00020665	514.2763019095315	70.855	0.54843	70.914	70.689	71.237	0.058578					43	20	3	0	0	0	0.0021834	3	16537	16488;16537;16598		114.65	53.292	1	359610			898	1644	591	596	1264;1265;1266	1265					0.026389382117031346
AYLVYTDRL	9	Unmodified	_AYLVYTDRL_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.248779296875	2	557.300581	1112.58661	0.32919	0.00018346	0.29648	0.00016523	0.62567	0.00034869	557.3007552806603	56.597	0.34722	56.597	56.43	56.777	0					17	12	2	0	0	0	0.14331	1	12334	12334		36.127	9.7857	1	113630			899	3081	592	597	1267	1267					0.03482012131757983
AYLVYTDRL	9	Unmodified	_AYLVYTDRL_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2489624023438	2	557.300581	1112.58661	0.46091	0.00025687	0.22462	0.00012518	0.68553	0.00038205	557.802031886615	56.504	0.27221	56.571	56.434	56.706	0.066448					11	9	2	0	0	0	0.20972	1	12184	12184		18.373	1.4308	1	92431			900	3081	592	597	1268	1268					0.03482012131757983
AYLVYYNEF	9	Unmodified	_AYLVYYNEF_					0	0	0			REV__ENST00000575310.1_1_17:7324913-7346173:+|nuORF	REV__ENST00000575310.1_1_17:7324913-7346173:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.2787475585938	2	591.279315	1180.54408	0.4528	0.00026773	-0.082527	-4.8796E-05	0.37027	0.00021893	591.2792232922158	67.783	1.074	67.783	67.368	68.442	0					98	39	3	0	0	0	0.11547	1	15699	15699		29.082	2.1979	1	605410	+		901	9871	593	598	1269	1269					-0.03897382996501619
AYLVYYNEF	9	Unmodified	_AYLVYYNEF_					0	0	0			REV__ENST00000575310.1_1_17:7324913-7346173:+|nuORF	REV__ENST00000575310.1_1_17:7324913-7346173:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	591.279315	1180.54408	0.4528	0.00026773	-0.082527	-4.8796E-05	0.37027	0.00021893	591.2792232922158	67.783	1.074	67.783	67.368	68.442	0	-0.0018752	0.000115	NaN	29.082	98	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605410	+		902	9871	593	598							-0.03897382996501619
AYLVYYNEF	9	Unmodified	_AYLVYYNEF_					0	0	0			REV__ENST00000575310.1_1_17:7324913-7346173:+|nuORF	REV__ENST00000575310.1_1_17:7324913-7346173:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	591.279315	1180.54408	0.67976	0.00040193	-0.35708	-0.00021113	0.32268	0.00019079	591.2789845713949	67.723	0.88214	67.786	67.526	68.408	0.063507	0.0018752	-0.00020968	NaN	29.082	75	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600780	+		903	9871	593	598							-0.03897382996501619
AYLYKYFAL	9	Unmodified	_AYLYKYFAL_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	nc|ENSG00000136156|Q9Y287-2|ITM2B;ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.3091430664062	2	576.310418	1150.60628	0.44754	0.00025792	-0.78462	-0.00045218	-0.33708	-0.00019426	576.3092885034365	71.031	0.58673	71.031	70.888	71.474	0					43	19	3	0	0	0	0.0087214	2	16729	16729;16773		71.134	36.732	1	825810			904	7363;2772	594	599	1270;1271	1270					0.037003881425107465
AYLYKYFAL	9	Unmodified	_AYLYKYFAL_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	nc|ENSG00000136156|Q9Y287-2|ITM2B;ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.3087768554688	2	576.310418	1150.60628	0.58065	0.00033464	-1.2306	-0.00070922	-0.64998	-0.00037459	576.30893240823	71.009	0.57845	71.068	70.831	71.41	0.058578					53	20	4	0	0	0	0.011655	2	16543	16543;16584		64.236	41.5	1	914970			905	7363;2772	594	599	1272;1273	1272					0.037003881425107465
AYMAYMICQF	10	Unmodified	_AYMAYMICQF_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.2763061523438	2	620.763606	1239.51266	-0.32768	-0.00020341	0.14171	8.7971E-05	-0.18596	-0.00011544	620.7638098206764	59.098	1.0612	59.098	58.595	59.656	0					73	35	3	0	0	0	0.41688	1	13148	13148		10.074	4.3421	1	432920			906	3265	595	600	1274	1274					-0.09751738618092531
AYMAYMICQF	10	Unmodified	_AYMAYMICQF_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.2769165039062	2	620.763606	1239.51266	-0.083211	-5.1654E-05	-1.0629	-0.00065983	-1.1462	-0.00071149	620.763379397375	59.01	1.2185	59.081	58.691	59.91	0.070477					67	47	3	0	0	0	0.31616	1	12987	12987		10.074	0.6908	1	360110			907	3265	595	600	1275	1275					-0.09751738618092531
AYMAYRVTTK	10	Unmodified	_AYMAYRVTTK_					0	0	0		ENST00000505854.5_1_5:122110798-122139331:+|nuORF;nc|ENSG00000205302|O60749-2|SNX2;ENSG00000205302|ENST00000379516|SNX2	ENST00000505854.5_1_5:122110798-122139331:+|nuORF	ENST00000505854.5_1_5:122110798-122139331:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8779602050781	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.153	1	26.244	25.744	26.744	0.091507								0	0	0	0.33988	1	3050	3050		0.12286	0	1				908	5513	596	601	1276	1276					0.018577436626628696
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(120)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7702026367188	2	571.770603	1141.52665	0.47269	0.00027027	-0.42621	-0.00024369	0.046484	2.6578E-05	571.7702532882294	63.622	2.7331	63.622	62.883	65.616	0					225	100	4	0	0	0	0.0017019	6	14415	14370;14415;14459;14502;14705;14763		117.6	83.197	1	1761700			909	3319	597	602	1277;1278;1279;1280;1281;1282	1278		214			-0.038450018031426225
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(97)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.769287109375	2	571.770603	1141.52665	0.31167	0.00017821	-0.94218	-0.00053871	-0.63051	-0.00036051	571.7698543172537	62.049	1.2062	62.049	61.763	62.969	0					101	45	3	0	0	0	0.00052429	1	13936	13936		97.075	66.85	1	1283300			910	3319	597	602	1283	1283		214			-0.038450018031426225
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(110)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.769775390625	2	571.770603	1141.52665	0.30163	0.00017246	-0.74887	-0.00042818	-0.44724	-0.00025572	571.7699553209297	61.993	1.3247	62.066	61.73	63.054	0.073421					107	53	3	0	0	0	0.0030029	1	13762	13762		109.63	71.478	1	1175300			911	3319	597	602	1284	1284		214			-0.038450018031426225
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(130)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7705688476562	2	571.770603	1141.52665	0.40784	0.00023319	-0.26924	-0.00015394	0.1386	7.9247E-05	571.7703583260103	63.486	1.8363	63.557	63.097	64.934	0.071014					194	68	4	0	0	0	0.00052627	5	14272	14185;14228;14272;14323;14530		131.3	95.254	1	1723700			912	3319	597	602	1285;1286;1287;1288;1289	1287		214			-0.038450018031426225
AYMPHTFFI	9	Unmodified	_AYMPHTFFI_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7730102539062	2	563.773145	1125.53174	0.50285	0.0002835	-1.1647	-0.00065663	-0.66186	-0.00037314	563.7725150535848	69.374	0.82769	69.374	69.191	70.018	0					48	28	2	0	0	0	0.009804	1	16225	16225		77.984	59.849	1	767620			913	3319	597	603	1290	1290					-0.026006979405110542
AYMPHTFFI	9	Unmodified	_AYMPHTFFI_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.773193359375	2	563.773145	1125.53174	0.24519	0.00013823	-1.4318	-0.00080719	-1.1866	-0.00066896	563.772793139514	69.282	0.88004	69.344	69.168	70.048	0.062126					75	33	4	0	0	0	0.0060931	1	16032	16032		85.357	53.24	1	944700			914	3319	597	603	1291	1291					-0.026006979405110542
AYNDNWFITF	10	Unmodified	_AYNDNWFITF_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.792724609375	2	645.793121	1289.57169	0.36763	0.00023741	-1.0561	-0.00068202	-0.68848	-0.00044461	645.7926072703906	94.328	1.4676	94.328	94.023	95.491	0					228	63	6	0	0	0	3.4554E-23	9	23801	23762;23801;23847;23890;23935;23983;24031;24072;24168		200.32	163.81	1	20766000			915	1573	598	604	1292;1293;1294;1295;1296;1297;1298;1299;1300	1293					-0.061514797362633544
AYNDNWFITF	10	Unmodified	_AYNDNWFITF_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.792724609375	2	645.793121	1289.57169	0.22402	0.00014467	-0.94874	-0.00061269	-0.72472	-0.00046802	645.7926961079631	94.291	1.4413	94.329	94.061	95.502	0.038086					201	59	6	0	0	0	6.0273E-43	8	23685	23591;23637;23685;23726;23773;23818;23859;23934		243.33	199.55	1	18679000			916	1573	598	604	1301;1302;1303;1304;1305;1306;1307;1308	1303					-0.061514797362633544
AYNEGIINLL	10	Unmodified	_AYNEGIINLL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.3068237304688	2	560.305864	1118.59717	0.83498	0.00046784	1.1192	0.00062707	1.9541	0.0010949	560.3066540198473	84.434	0.44002	84.434	84.283	84.723	0					58	33	2	0	0	0	0.00091915	2	20786	20786;20830		91.085	25.85	1	2039600			917	7460	599	605	1309;1310	1309					0.04261994786179457
AYNEGIINLL	10	Unmodified	_AYNEGIINLL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.306640625	2	560.305864	1118.59717	0.59165	0.00033151	1.3498	0.00075631	1.9415	0.0010878	560.3070843182168	84.447	0.44803	84.471	84.218	84.666	0.023132					68	34	3	0	0	0	0.00018049	3	20660	20624;20660;20693		100.71	35.474	1	1715900			918	7460	599	605	1311;1312;1313	1312					0.04261994786179457
AYNKLNVFHW	10	Unmodified	_AYNKLNVFHW_					0	0	0		ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENSG00000213614|ENST00000268097|HEXA;ENST00000563762.5_1_15:72640446-72647950:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA	ENST00000568777.5_1_15:72638642-72646100:-|nuORF	ENST00000568777.5_1_15:72638642-72646100:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	431.22418212890625	3	431.224257	1290.65094	0.47097	0.00020309	-0.93946	-0.00040512	-0.46848	-0.00020202	431.22398077150706	57.082	1.2282	57.082	56.6	57.829	0					80	44	3	0	0	0	0.12534	1	12500	12500		42.312	33.868	1	354930			919	5548	600	606	1314	1314					0.017242120085484203
AYNKLNVFHW	10	Unmodified	_AYNKLNVFHW_					0	0	0		ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENSG00000213614|ENST00000268097|HEXA;ENST00000563762.5_1_15:72640446-72647950:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA	ENST00000568777.5_1_15:72638642-72646100:-|nuORF	ENST00000568777.5_1_15:72638642-72646100:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	431.22412109375	3	431.224257	1290.65094	0.24801	0.00010695	-0.43114	-0.00018592	-0.18314	-7.8973E-05	431.2241165969889	56.99	0.75125	57.056	56.853	57.604	0.066452					68	28	3	0	0	0	0.018369	1	12309	12309		69.338	57.163	1	454740			920	5548	600	606	1315	1315					0.017242120085484203
AYNPNTQTF	9	Unmodified	_AYNPNTQTF_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2432250976562	2	528.243264	1054.47197	-0.17539	-9.2649E-05	0.13929	7.3578E-05	-0.036102	-1.9071E-05	528.2435483697919	45.591	0.68069	45.591	45.358	46.039	0					40	23	3	0	0	0	0.0089808	1	8978	8978		70.332	35.4	1	188380			921	4581	601	607	1316	1316					-0.05308297350211433
AYNPNTQTF	9	Unmodified	_AYNPNTQTF_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	528.243264	1054.47197	0.033815	1.7863E-05	0.37414	0.00019764	0.40795	0.0002155	528.2437006113986	45.49	0.61655	45.575	45.319	45.936	0.085621	-0.0079942	0.00014867	NaN	70.332	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167330			922	4581	601	607							-0.05308297350211433
AYNQFINTN	9	Unmodified	_AYNQFINTN_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7586669921875	2	542.756538	1083.49852	0.20227	0.00010978	2.3458	0.0012732	2.5481	0.001383	542.7577116212212	39.029	0.51676	39.029	38.741	39.258	0					30	20	2	0	0	0	0.33849	1	6969	6969		1.6526	0	1	44155	+		923	10349	602	608	1317	1317					-0.03988608458826093
AYPAIRYLL	9	Unmodified	_AYPAIRYLL_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3163452148438	2	540.316035	1078.61752	0.42223	0.00022814	0.25973	0.00014034	0.68196	0.00036847	540.3160819364269	67.914	1.2095	67.914	67.46	68.669	0					106	44	4	0	0	0	0.0076571	2	15790	15744;15790		74.423	54.008	1	630640			924	2588	603	609	1318;1319	1319					0.08135210236650892
AYPAIRYLL	9	Unmodified	_AYPAIRYLL_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3163452148438	2	540.316035	1078.61752	0.7041	0.00038044	-0.10453	-5.6477E-05	0.59957	0.00032396	540.3158346159137	67.913	1.0086	67.976	67.501	68.509	0.063499					91	36	3	0	0	0	0.024893	3	15577	15577;15623;15664		54.774	42.242	1	557930			925	2588	603	609	1320;1321;1322	1320					0.08135210236650892
AYPCGDMNSF	10	Unmodified	_AYPCGDMNSF_					0	0	0		ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7535400390625	2	552.709885	1103.40522	0.63255	0.00034961	-0.36302	-0.00020065	0.26952	0.00014897	552.7096730524652	55.337	0.58047	55.337	55.112	55.692	0					46	20	3	0	0	0	0.31456	1	11911	11911		14.838	2.3067	1	247480			926	4127	604	610	1323	1323					-0.1423499222796636
AYPEYLITF	9	Unmodified	_AYPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7848510742188	2	558.784233	1115.55391	0.46622	0.00026051	0.15303	8.5513E-05	0.61925	0.00034603	558.7845316056369	85.837	0.80143	85.837	85.53	86.331	0					132	32	6	0	0	0	1.7467E-05	4	21225	21180;21225;21272;21317		141.83	93.481	1	19800000			927	4532	605	611	1324;1325;1326;1327	1325					0.0007580500889616815
AYPEYLITF	9	Unmodified	_AYPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7849731445312	2	558.784233	1115.55391	0.6736	0.00037639	-0.18979	-0.00010605	0.4838	0.00027034	558.7844249675372	85.809	1.3451	85.834	85.511	86.856	0.025169					140	53	5	0	0	0	0.0020132	4	21066	21019;21066;21115;21164		115.69	75.735	1	20113000			928	4532	605	611	1328;1329;1330;1331	1329					0.0007580500889616815
AYPEYLITF	9	Unmodified	_AYPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3093872070312	2	558.784233	1115.55391	0.49031	0.00027398	-2.0233	-0.0011306	-1.533	-0.00085661	559.2846969844982	88.86	0.57182	88.893	88.598	89.17	0.032265					30	23	2	0	0	0	0.24635	1	22035	22035		10.824	3.215	1	82930			929	4532	605	611	1332	1332					0.0007580500889616815
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(170)TF	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2579345703125	2	555.257859	1108.50117	0.43536	0.00024174	-0.1785	-9.9116E-05	0.25686	0.00014262	555.2577227439846	46.834	1.6723	46.834	46.607	48.279	0					187	63	5	0	0	0	5.7591E-09	9	9346	9302;9346;9394;9440;9486;9534;9589;9682;9736		166.45	122.37	1	3132200			930	709	606	612	1333;1334;1335;1336;1337;1338;1339;1340;1341	1334		37			-0.04874476325562682
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(170)TF	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2579956054688	2	555.257859	1108.50117	0.34229	0.00019006	-0.19998	-0.00011104	0.14232	7.9022E-05	555.2577439250975	48.931	4.7431	48.931	48.07	52.813	0					397	165	4	0	0	0	4.5562E-09	12	9980	9891;9936;9980;10023;10065;10110;10215;10266;10304;10317;10445;10594		168.66	134.26	1	2687600			931	709	606	612	1342;1343;1344;1345;1346;1347;1348;1349;1350;1351;1352;1353	1344		37			-0.04874476325562682
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(170)TF	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2579956054688	2	555.257859	1108.50117	0.50813	0.00028214	-0.26021	-0.00014448	0.24792	0.00013766	555.2577257891273	46.722	1.6785	46.805	46.599	48.277	0.083092					181	71	5	0	0	0	5.7591E-09	9	9193	9151;9193;9237;9286;9330;9397;9442;9517;9565		166.45	135.81	1	2642900			932	709	606	612	1354;1355;1356;1357;1358;1359;1360;1361;1362	1355		37			-0.04874476325562682
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(180)TF	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2579956054688	2	555.257859	1108.50117	0.39328	0.00021837	-0.16214	-9.0032E-05	0.23114	0.00012834	555.2577697170145	48.777	4.2843	48.854	47.752	52.036	0.076607					341	155	5	0	0	0	9.8596E-13	9	9831	9671;9678;9735;9786;9831;9875;9926;9969;10121		181.33	139.37	1	2024100			933	709	606	612	1363;1364;1365;1366;1367;1368;1369;1370;1371	1367		37			-0.04874476325562682
AYPHNLMTF	9	Unmodified	_AYPHNLMTF_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2603759765625	2	547.260402	1092.50625	0.45448	0.00024872	-0.46531	-0.00025464	-0.010822	-5.9226E-06	547.2599081946839	57.372	1.332	57.372	56.885	58.217	0					97	47	3	0	0	0	0.0042542	2	12571	12529;12571		100.37	42.9	1	600150			934	709	606	613	1372;1373	1373					-0.03630172462931114
AYPHNLMTF	9	Unmodified	_AYPHNLMTF_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.26025390625	2	547.260402	1092.50625	0.439	0.00024024	-0.28047	-0.00015349	0.15852	8.6754E-05	547.2600497865807	57.258	1.1623	57.326	56.972	58.134	0.068375					90	44	3	0	0	0	0.003963	3	12402	12368;12402;12408		103.75	46.277	1	588820			935	709	606	613	1374;1375;1376	1375					-0.03630172462931114
AYPHRLNLF	9	Unmodified	_AYPHRLNLF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.31005859375	2	565.808908	1129.60326	0.1838	0.00010399	-0.14713	-8.3248E-05	0.036666	2.0746E-05	565.808845157486	48.311	0.53381	48.311	48.123	48.656	0					38	17	3	0	0	0	0.12809	2	9800	9800;9874		26.884	16.06	1	161340			936	3880	607	614	1377;1378	1377					0.04364557808344216
AYPPALRE	8	Unmodified	_AYPPALRE_					0	0	0		ENST00000356508.9_1_19:40871466-40872398:+|nuORF;ENST00000598962.5_1_19:40871799-40872398:+|nuORF;ENST00000409419.5_1_19:40854624-40872398:+|nuORF;ENST00000599685.5_1_19:40854530-40872398:+|nuORF;ENST00000596682.5_1_19:40854624-40872398:+|nuORF	ENST00000356508.9_1_19:40871466-40872398:+|nuORF	ENST00000356508.9_1_19:40871466-40872398:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.8741149902344	2	458.747985	915.481417	-0.48564	-0.00022278	-0.62373	-0.00028614	-1.1094	-0.00050892	458.74733630507035	41.693	0.28101	41.693	41.575	41.856	0					14	10	2	0	0	0	0.3576	1	7808	7808		7.9102	0.62092	1	26399			937	6122	608	615	1379	1379					0.020295157259852203
AYPPAPFMHIL	11	Unmodified	_AYPPAPFMHIL_					0	0	0		ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	ENST00000484819.1_1_1:154238957-154241481:+|nuORF	ENST00000484819.1_1_1:154238957-154241481:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.828125	2	628.828452	1255.64235	0.25469	0.00016015	-0.011261	-7.0814E-06	0.24342	0.00015307	628.82819011439	74.58	0.53473	74.58	74.4	74.935	0					32	19	2	0	0	0	0.40315	1	17823	17823		3.5965	0.31518	1	155490			938	3170	609	616	1380	1380					0.024755220477572948
AYPPNGVECY	10	Unmodified	_AYPPNGVECY_					0	0	0		ENSG00000124466|ENST00000244333|LYPD3	ENSG00000124466|ENST00000244333|LYPD3	ENSG00000124466|ENST00000244333|LYPD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.75244140625	2	556.739499	1111.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.587	1	69.649	69.149	70.149	0.062126								0	0	0	0.32902	1	16128	16128		13.042	2.9685	1				939	2255	610	617	1381	1381					-0.0868277294212021
AYPTVKFYF	9	Unmodified	_AYPTVKFYF_					0	0	0		ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2947387695312	2	568.294768	1134.57498	0.3756	0.00021345	-0.20161	-0.00011457	0.17399	9.8877E-05	568.2945388604946	68.463	0.89331	68.463	68.211	69.104	0					78	32	4	0	0	0	0.0093779	1	15930	15930		69.105	42.221	1	848100			940	855	611	618	1382	1382					0.013078151084073397
AYPTVKFYF	9	Unmodified	_AYPTVKFYF_					0	0	0		ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2946166992188	2	568.294768	1134.57498	0.35537	0.00020196	-0.17905	-0.00010175	0.17632	0.0001002	568.2945231192265	68.384	0.83398	68.448	68.221	69.055	0.063507					78	31	4	0	0	0	0.017478	2	15740	15740;15784		60.074	34.675	1	920820			941	855	611	618	1383;1384	1383					0.013078151084073397
AYPVWTAQL	9	Unmodified	_AYPVWTAQL_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.310791015625	2	524.776742	1047.53893	0.43894	0.00023035	0.074179	3.8927E-05	0.51312	0.00026928	524.7768553999653	75.04	0.52946	75.04	74.796	75.326	0					29	19	2	0	0	0	0.16392	1	17969	17969		32.786	19.171	1	292740			942	966	612	619	1385	1385					0.01706357931561797
AYPVWTAQL	9	Unmodified	_AYPVWTAQL_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3110961914062	2	524.776742	1047.53893	0.26858	0.00014095	-0.18717	-9.8224E-05	0.081412	4.2723E-05	524.776970275077	75.084	0.36758	75.128	74.867	75.235	0.044037					20	13	2	0	0	0	0.089428	1	17786	17786		47.749	24.6	1	289210			943	966	612	619	1386	1386					0.01706357931561797
AYPYNFSNL	9	Unmodified	_AYPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7562866210938	2	544.756007	1087.49746	0.5292	0.00028828	0.12694	6.9153E-05	0.65614	0.00035744	544.7559559401152	69.443	0.8278	69.443	69.215	70.043	0					73	28	4	0	0	0	1.2541E-09	2	16250	16250;16305		174.73	117.01	1	1537700			944	4574	613	620	1387;1388	1387					-0.042788228277458984
AYPYNFSNL	9	Unmodified	_AYPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7564086914062	2	544.756007	1087.49746	0.2652	0.00014447	0.39171	0.00021339	0.65691	0.00035786	544.7561066519645	69.341	0.82391	69.404	69.211	70.034	0.062126					80	30	4	0	0	0	4.0719E-13	3	16066	16066;16115;16170		189.78	123.32	1	2043500			945	4574	613	620	1389;1390;1391	1389					-0.042788228277458984
AYQDRLAYL	9	Unmodified	_AYQDRLAYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.790283203125	2	556.790381	1111.56621	0.34027	0.00018946	0.15526	8.6446E-05	0.49553	0.00027591	556.7901919883934	52.954	0.5638	52.954	52.729	53.293	0					65	21	5	0	0	0	0.020768	2	11194	11194;11242		57.722	24.277	1	417440			946	3024	614	621	1392;1393	1392					0.014888414719507637
AYQDRLAYL	9	Unmodified	_AYQDRLAYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7904052734375	2	556.790381	1111.56621	0.59311	0.00033024	-0.38862	-0.00021638	0.2045	0.00011386	556.7900310438043	52.916	0.58142	52.981	52.77	53.351	0.06543					57	26	3	0	0	0	0.048027	2	11046	11046;11093		43.772	16.549	1	385600			947	3024	614	621	1394;1395	1394					0.014888414719507637
AYQFNHHEL	9	Unmodified	_AYQFNHHEL_					0	0	0		ENST00000330514.4_1_17:42883048-42884925:-|nuORF;ENST00000586267.1_1_17:42883048-42906984:-|nuORF;ENST00000590758.3_1_17:42883048-42908178:-|nuORF	ENST00000330514.4_1_17:42883048-42884925:-|nuORF	ENST00000330514.4_1_17:42883048-42884925:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2976684570312	2	579.76998	1157.52541	0.17916	0.00010387	-3.6605	-0.0021222	-3.4813	-0.0020184	579.7680000662283	90.801	0.38501	90.836	90.581	90.966	0.035446					23	15	2	0	0	0	0.24263	1	22550	22550		12.532	4.6214	1	73921			948	6053	615	622	1396	1396					-0.04705499847682404
AYQHAFLYI	9	Unmodified	_AYQHAFLYI_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2907104492188	2	563.290017	1124.56548	0.43058	0.00024254	1.1209	0.00063137	1.5514	0.00087392	563.2904218752066	62.993	0.68811	63.066	62.906	63.594	0.072701					63	28	3	0	0	0	0.22344	1	14133	14133		15.847	4.2069	1	474990			949	5183	616	623	1397	1397					0.008180468229056714
AYQHAFLYIRQ	11	Unmodified	_AYQHAFLYIRQ_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.58209228515625	3	470.582333	1408.72517	0.080637	3.7946E-05	-0.2671	-0.00012569	-0.18646	-8.7747E-05	470.91651923393977	59.514	0.68097	59.514	59.336	60.017	0					39	26	2	0	0	0	0.38613	1	13216	13216		7.4771	1.2427	1	205520			950	5183	617	624	1398	1398					0.037155551000751075
AYQHAFLYIRQ	11	Unmodified	_AYQHAFLYIRQ_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.582275390625	3	470.582333	1408.72517	-0.070469	-3.3161E-05	0.32622	0.00015352	0.25576	0.00012035	470.5824984815566	59.479	0.48446	59.551	59.271	59.756	0.072342					30	18	2	0	0	0	0.38613	1	13047	13047		7.4771	0.85361	1	238360			951	5183	617	624	1399	1399					0.037155551000751075
AYQHFPDKAL	10	Unmodified	_AYQHFPDKAL_					0	0	0		ENST00000503952.5_1_4:128606686-128637588:+|nuORF	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3045654296875	2	595.303655	1188.59276	0.38433	0.00022879	0.77921	0.00046387	1.1635	0.00069266	595.3036472700547	75.176	0.51681	75.176	74.961	75.478	0					33	19	2	0	0	0	0.24525	1	17986	17986		28.495	3.0952	1	388400			952	6879	618	625	1400	1400					0.006005303632946379
AYQHFPDKAL	10	Unmodified	_AYQHFPDKAL_					0	0	0		ENST00000503952.5_1_4:128606686-128637588:+|nuORF	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3043823242188	2	595.303655	1188.59276	0.24495	0.00014582	1.1866	0.00070638	1.4315	0.0008522	595.3042276020079	75.161	0.55831	75.206	74.967	75.525	0.044037					33	19	2	0	0	0	0.12844	1	17814	17814		41.956	9.1699	1	547710			953	6879	618	625	1401	1401					0.006005303632946379
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3145751953125	2	584.313492	1166.61243	0.63232	0.00036947	0.12652	7.393E-05	0.75884	0.0004434	584.3139527634924	75.158	2.3494	75.158	74.854	77.204	0					254	107	4	0	0	0	0.0017019	3	17982	17933;17982;18029		117.6	46.734	1	72487000			954	4948;3024	619	626	1402;1403;1404	1403					0.03578906374059443
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3136596679688	2	584.313492	1166.61243	0.48088	0.00028099	-0.050151	-2.9304E-05	0.43073	0.00025168	584.3133049657775	77.352	1.6214	77.352	77.28	78.901	0					79	61	2	0	0	0	0.12809	1	18938	18938		26.884	8.7487	1	724300			955	4948;3024	619	626	1405	1405					0.03578906374059443
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3137817382812	2	584.313492	1166.61243	0.69735	0.00040747	-0.065881	-3.8495E-05	0.63147	0.00036897	584.313850775965	75.084	1.2475	75.128	74.841	76.089	0.044037					150	61	4	0	0	0	0.0010237	3	17767	17767;17811;17859		123.1	52.232	1	76984000			956	4948;3024	619	626	1406;1407;1408	1406					0.03578906374059443
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	584.313492	1166.61243	0.74547	0.00043559	-0.012424	-7.2597E-06	0.73305	0.00042833	584.3133691159364	77.288	0.75108	77.323	77.275	78.026	0.034485	-0.014545	2.7293E-05	NaN	26.884	40	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	665060			957	4948;3024	619	626							0.03578906374059443
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENST00000600027.5_1_19:49999677-50000944:+|nuORF;ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2954711914062	2	548.295299	1094.57605	-0.12234	-6.7081E-05	-0.08482	-4.6507E-05	-0.20716	-0.00011359	548.2951506339309	44.555	0.57971	44.555	44.329	44.909	0					36	20	2	0	0	0	0.020768	2	8653	8653;8700		57.722	31.454	1	195170			958	7295	620	627	1409;1410	1409					0.032540294773070855
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENST00000600027.5_1_19:49999677-50000944:+|nuORF;ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2964477539062	2	548.295299	1094.57605	0.088136	4.8324E-05	0.13868	7.6037E-05	0.22681	0.00012436	548.295265306536	44.487	0.4916	44.575	44.334	44.825	0.087543					40	17	3	0	0	0	0.023873	2	8493	8493;8543		55.503	28.28	1	153120			959	7295	620	627	1411;1412	1411					0.032540294773070855
AYQLMTDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))TDVF_		AYQLM(1)TDVF		AYQLM(72)TDVF	0	0	1		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2396850585938	2	552.257525	1102.5005	0.56212	0.00031044	-0.04061	-2.2427E-05	0.52151	0.00028801	552.2573812236315	68.686	0.69599	68.686	68.408	69.104	0					56	25	3	0	0	0	0.0084662	4	15967	15967;15987;16032;16083		71.922	31.973	1	502070			960	614	621	628	1413;1414;1415;1416	1413		33			-0.04665315765282685
AYQLMTDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))TDVF_		AYQLM(1)TDVF		AYQLM(82)TDVF	0	0	1		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2581176757812	2	552.257525	1102.5005	0.5802	0.00032042	-0.091264	-5.0401E-05	0.48893	0.00027002	552.2573837077447	70.843	1.3085	70.843	70.418	71.726	0					109	45	3	0	0	0	0.0093433	1	16697	16697		81.89	41.933	1	523630			961	614	621	628	1417	1417		33			-0.04665315765282685
AYQLMTDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))TDVF_		AYQLM(1)TDVF		AYQLM(82)TDVF	0	0	1		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2576904296875	2	552.257525	1102.5005	0.49752	0.00027476	-0.22264	-0.00012296	0.27488	0.0001518	552.2573260686189	68.584	0.64713	68.647	68.407	69.054	0.062439					56	24	3	0	0	0	0.0052407	3	15813	15794;15813;15859		81.89	41.933	1	417010			962	614	621	628	1418;1419;1420	1419		33			-0.04665315765282685
AYQLMTDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))TDVF_		AYQLM(1)TDVF		AYQLM(56)TDVF	0	0	1		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2576904296875	2	552.257525	1102.5005	0.75493	0.00041692	-0.24862	-0.0001373	0.50631	0.00027961	552.2572627020437	70.714	1.013	70.773	70.451	71.464	0.058578					91	38	3	0	0	0	0.02293	1	16536	16536		56.177	21.775	1	474890			963	614	621	628	1421	1421		33			-0.04665315765282685
AYQLMTDVF	9	Unmodified	_AYQLMTDVF_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7940673828125	2	544.260068	1086.50558	0.60466	0.00032909	-0.039873	-2.1701E-05	0.56479	0.00030739	544.260181219941	79.647	0.70346	79.647	79.223	79.926	0					31	20	3	0	0	0	0.15403	1	19368	19368		34.402	5.3201	1	193130			964	614	621	629	1422	1422					-0.034210119026511165
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(100)VDVF	0	0	1		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2683715820312	2	551.267893	1100.52123	0.38175	0.00021045	0.19435	0.00010714	0.5761	0.00031759	551.267997910942	77.886	0.93356	77.886	77.634	78.568	0					75	31	4	0	0	0	0.0042692	2	18810	18810;18854		99.799	59.842	1	1793800			965	2680	622	630	1423;1424	1423		173			-0.025007253856074385
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(150)VDVF	0	0	1		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2682495117188	2	551.267893	1100.52123	0.55643	0.00030674	-0.065088	-3.5881E-05	0.49134	0.00027086	551.2677495338003	79.242	1.6019	79.242	78.568	80.169	0					137	55	4	0	0	0	8.832E-06	2	19233	19183;19233		149.99	110.04	1	1374000			966	2680	622	630	1425;1426	1426		173			-0.025007253856074385
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(100)VDVF	0	0	1		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2682495117188	2	551.267893	1100.52123	0.59678	0.00032899	-0.067415	-3.7164E-05	0.52937	0.00029182	551.2678789640597	77.838	0.91975	77.873	77.649	78.568	0.034485					68	31	4	0	0	0	0.0042692	2	18635	18635;18683		99.799	67.493	1	1649700			967	2680	622	630	1427;1428	1427		173			-0.025007253856074385
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(100)VDVF	0	0	1		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2681274414062	2	551.267893	1100.52123	0.40108	0.0002211	0.081097	4.4706E-05	0.48218	0.00026581	551.267816626225	79.3	1.2639	79.327	78.814	80.078	0.026428					122	44	4	0	0	0	0.0042692	2	19064	19015;19064		99.799	59.842	1	1523600			968	2680	622	630	1429;1430	1430		173			-0.025007253856074385
AYQPDIRWF	9	Unmodified	_AYQPDIRWF_					0	0	0			REV__ENSG00000129654|ENST00000322957|FOXJ1	REV__ENSG00000129654|ENST00000322957|FOXJ1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3004150390625	2	598.298373	1194.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.171	1	99.214	98.714	99.714	0.042839								0	0	0	0.28527	1	25136	25136		2.0598	0.40713	1		+		969	9040	623	631	1431	1431					-0.0073145229116562405
AYQRLREERLQ	11	Unmodified	_AYQRLREERLQ_					0	0	0			REV__nc|ENSG00000104529|P29692-3|EEF1D	REV__nc|ENSG00000104529|P29692-3|EEF1D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.93560791015625	3	487.935546	1460.78481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.938	1	47.021	46.521	47.521	0.083096								0	0	0	0.34068	1	9257	9257		0.50596	0	1		+		970	8509	624	632	1432	1432					0.07284826043473913
AYQYGQFF	8	Unmodified	_AYQYGQFF_					0	0	0			REV__nc|ENSG00000104413|Q6NXG1-3|ESRP1	REV__nc|ENSG00000104413|Q6NXG1-3|ESRP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7730102539062	2	512.232168	1022.44978	0.3805	0.0001949	-2.49	-0.0012755	-2.1095	-0.0010806	512.2311243394425	75.355	0.28034	75.399	75.266	75.546	0.044037					15	9	2	0	0	0	0.35713	1	17874	17874		14.582	4.5078	1	154500	+		971	8508	625	633	1433	1433					-0.060544770279420845
AYRIARREP	9	Unmodified	_AYRIARREP_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.31005859375	2	566.322714	1130.63087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.191	1	48.271	47.771	48.771	0.080029								0	0	0	0.2722	1	9634	9634		4.756	0.42677	1		+		972	10908	626	634	1434	1434					0.07078461068613251
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD	ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENST00000474241.1_1_1:98157206-98165091:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2817077636719	2	492.28166	982.548768	0.50575	0.00024897	-0.10353	-5.0968E-05	0.40222	0.000198	492.2814970152535	60.049	1.2213	60.049	59.81	61.032	0					120	43	4	0	0	0	3.513E-06	4	13398	13354;13398;13441;13495		155.03	96.347	1	1760200			973	5168	627	635	1435;1436;1437;1438	1436					0.05679545936948216
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD	ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENST00000474241.1_1_1:98157206-98165091:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.28179931640625	2	492.28166	982.548768	0.20982	0.00010329	0.25242	0.00012426	0.46224	0.00022755	492.2816282737987	59.965	1.3717	60.037	59.798	61.17	0.072338					117	48	4	0	0	0	0.00081324	4	13224	13182;13224;13269;13318		126.57	67.887	1	1652300			974	5168	627	635	1439;1440;1441;1442	1440					0.05679545936948216
AYSEIAYLF	9	Unmodified	_AYSEIAYLF_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7598876953125	2	538.768583	1075.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.368	1	85.368	84.868	85.868	0								0	0	0	0.15603	1	21095	21095		24.674	7.5873	1				975	2690	628	636	1443	1443					-0.012127680251978745
AYSELLGLE	9	Unmodified	_AYSELLGLE_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant;ENST00000476776.1_1_13:23927912-23929028:-|nuORF	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2576904296875	2	497.758215	993.501877	0.51155	0.00025463	0.071499	3.5589E-05	0.58305	0.00029022	497.75818817666465	64.475	0.39728	64.544	64.374	64.771	0.068916					22	14	2	0	0	0	0.2446	1	14616	14616		11.64	2.2929	1	85395			976	3475	629	637	1444	1444					0.00486641595148285
AYSELLGLE	9	Unmodified	_AYSELLGLE_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant;ENST00000476776.1_1_13:23927912-23929028:-|nuORF	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	497.758215	993.501877	0.63725	0.00031719	-0.53547	-0.00026653	0.10178	5.0662E-05	497.7578006175503	64.676	0.4594	64.676	64.356	64.816	0	0.065855	-0.00022126	NaN	11.64	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87966			977	3475	629	637							0.00486641595148285
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3008422851562	2	578.300916	1154.58728	0.09248	5.3481E-05	-0.54886	-0.0003174	-0.45638	-0.00026392	578.3003623995018	46.239	0.51743	46.239	45.902	46.42	0					26	17	2	0	0	0	0.28472	1	9168	9168		8.7454	3.5147	1	92211			978	937	630	638	1445	1445					0.01616851571452571
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8023681640625	2	578.300916	1154.58728	0.16911	9.7795E-05	-0.98537	-0.00056984	-0.81627	-0.00047205	578.3001150031712	46.163	0.45788	46.248	45.936	46.393	0.085617					30	16	3	0	0	0	0.20162	1	9011	9011		18.373	11.743	1	95638			979	937	630	638	1446	1446					0.01616851571452571
AYSILWDLKF	10	Unmodified	_AYSILWDLKF_					0	0	0		nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4;ENSG00000148248|ENST00000371989|SURF4;ENST00000465565.1_1_9:136230607-136232949:-|nuORF	nc|ENSG00000148248|O15260-3|SURF4	nc|ENSG00000148248|O15260-3|SURF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.3392333984375	2	628.339707	1254.66486	0.52635	0.00033072	-1.3662	-0.00085841	-0.8398	-0.00052768	628.3388280377391	84.98	0.32401	84.98	84.838	85.162	0					21	10	3	0	0	0	0.36848	1	20989	20989		15.248	7.6395	1	232760			980	3354	631	639	1447	1447					0.047714447169710184
AYSILWDLKF	10	Unmodified	_AYSILWDLKF_					0	0	0		nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4;ENSG00000148248|ENST00000371989|SURF4;ENST00000465565.1_1_9:136230607-136232949:-|nuORF	nc|ENSG00000148248|O15260-3|SURF4	nc|ENSG00000148248|O15260-3|SURF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.339111328125	2	628.339707	1254.66486	0.64881	0.00040767	-1.3279	-0.00083438	-0.67911	-0.00042671	628.3389230188708	85.011	0.261	85.034	84.895	85.156	0.023125					19	9	3	0	0	0	0.24525	1	20836	20836		28.495	10.121	1	154210			981	3354	631	639	1448	1448					0.047714447169710184
AYSLFYTAF	9	Unmodified	_AYSLFYTAF_					0	0	0			REV__ENSG00000140107|ENST00000361529|SLC25A47	REV__ENSG00000140107|ENST00000361529|SLC25A47	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.27734375	2	541.7633	1081.51205	-0.31405	-0.00017014	-1.1647	-0.00063098	-1.4787	-0.00080112	541.7626941223886	42.677	0.30694	42.677	42.489	42.796	0					16	10	2	0	0	0	0.25845	1	8062	8062		2.0598	0	1	53202	+		982	9361	632	640	1449	1449					-0.025447506796126618
AYSLFYTAF	9	Unmodified	_AYSLFYTAF_					0	0	0			REV__ENSG00000140107|ENST00000361529|SLC25A47	REV__ENSG00000140107|ENST00000361529|SLC25A47	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	541.7633	1081.51205	-0.10334	-5.5988E-05	-0.17176	-9.3054E-05	-0.2751	-0.00014904	541.7630644578885	42.575	0.2916	42.665	42.547	42.838	0.089764	-0.0060782	0.00057011	NaN	8.5933	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52190	+		983	9361	632	640							-0.025447506796126618
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.2872924804688	2	519.286943	1036.55933	0.53174	0.00027613	0.18299	9.5026E-05	0.71474	0.00037115	519.2869428332559	92.067	0.86143	92.067	91.652	92.513	0					72	25	4	0	0	0	9.8596E-13	1	23145	23145		181.33	123.86	1	1260800			984	3010	633	641	1450	1450					0.042515285913850676
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.2872314453125	2	519.286943	1036.55933	0.39012	0.00020259	0.31901	0.00016566	0.70913	0.00036824	519.287011999778	92.067	0.60001	92.103	91.829	92.429	0.03653					59	20	4	0	0	0	3.2846000000000005E-19	1	22972	22972		214.14	156.67	1	1014200			985	3010	633	641	1451	1451					0.042515285913850676
AYSLRVELQ	9	Unmodified	_AYSLRVELQ_					0	0	0		nc|ENSG00000101280|Q9Y264-2|ANGPT4;ENSG00000101280|ENST00000381922|ANGPT4	nc|ENSG00000101280|Q9Y264-2|ANGPT4	nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8104858398438	2	539.798206	1077.58186	0.25215	0.00013611	0.56229	0.00030352	0.81444	0.00043963	539.798491237443	34.815	0.26405	34.892	34.776	35.04	0.076244					11	9	2	0	0	0	0.27929	2	5602	5602;5650		9.3831	0	1	13791			986	1248	634	642	1452;1453	1452					0.0461712798901317
AYSPRFLYI	9	Unmodified	_AYSPRFLYI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3054809570312	2	565.305667	1128.59678	0.69792	0.00039454	-0.32578	-0.00018417	0.37213	0.00021037	565.3053659378639	66.166	1.3042	66.166	65.909	67.213	0					127	48	4	0	0	0	0.0072241	2	15214	15214;15264		75.761	50.77	1	2305100			987	2549	635	643	1454;1455	1454					0.03762619856979654
AYSPRFLYI	9	Unmodified	_AYSPRFLYI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8868408203125	2	565.305667	1128.59678	0.43384	0.00024525	-0.79807	-0.00045115	-0.36423	-0.0002059	565.3054185814016	67.625	0.51233	67.625	67.213	67.725	0					25	19	2	0	0	0	0.25052	1	15715	15715		8.7454	0.58988	1	93647			988	2549	635	643	1456	1456					0.03762619856979654
AYSPRFLYI	9	Unmodified	_AYSPRFLYI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.305908203125	2	565.305667	1128.59678	0.55718	0.00031497	-0.20658	-0.00011678	0.35059	0.00019819	565.3054607910001	66.148	0.74928	66.215	65.939	66.688	0.066872					85	28	4	0	0	0	0.005983	3	15107	15062;15107;15150		79.596	54.605	1	1877100			989	2549	635	643	1457;1458;1459	1458					0.03762619856979654
AYSRVQYQF	9	Unmodified	_AYSRVQYQF_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2879638671875	2	581.288005	1160.56146	-0.09762	-5.6745E-05	0.31244	0.00018162	0.21482	0.00012487	581.2880018004489	45.377	0.63136	45.377	45.177	45.808	0					43	21	3	0	0	0	0.2359	1	8946	8946		14.405	5.66	1	208990			990	85	636	644	1460	1460					-0.012400426708154555
AYSRVQYQF	9	Unmodified	_AYSRVQYQF_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.287841796875	2	581.288005	1160.56146	0.25471	0.00014806	0.35954	0.000209	0.61425	0.00035706	581.2879653668028	45.266	0.58097	45.354	45.148	45.729	0.08754					41	21	4	0	0	0	0.048027	1	8750	8750		43.772	21.036	1	215450			991	85	636	644	1461	1461					-0.012400426708154555
AYSSISHMAL	10	Unmodified	_AYSSISHMAL_					0	0	0		ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2636108398438	2	540.263142	1078.51173	0.32471	0.00017543	-0.01115	-6.024E-06	0.31356	0.00016941	540.2631829448565	48.063	1.1232	48.063	47.735	48.858	0					60	38	2	0	0	0	0.40987	1	9752	9752		10.824	0.75	1	178080			992	5426	637	645	1462	1462					-0.024384936711157934
AYSSISHMAL	10	Unmodified	_AYSSISHMAL_					0	0	0		ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2633056640625	2	540.263142	1078.51173	0.61888	0.00033436	-0.014431	-7.7963E-06	0.60445	0.00032656	540.263149975481	47.961	0.90915	48.041	47.756	48.665	0.080029					56	31	3	0	0	0	0.40987	1	9529	9529		10.824	0.75	1	116620			993	5426	637	645	1463	1463					-0.024384936711157934
AYSTFPPEGVF	11	Unmodified	_AYSTFPPEGVF_					0	0	0		nc|ENSG00000071967|Q53TN4-3|CYBRD1;ENSG00000071967|ENST00000321348|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.79052734375	2	607.790047	1213.56554	0.49518	0.00030097	0.19487	0.00011844	0.69005	0.00041941	607.7900361744594	87.154	1.0217	87.182	86.882	87.903	0.027573					96	41	3	0	0	0	0.35043	2	21597	21417;21597		12.241	0.74595	1	1011800			994	776	638	646	1464;1465	1465					-0.03269997967754534
AYSTPDKIF	9	Unmodified	_AYSTPDKIF_					0	0	0		nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2551879882812	2	521.266207	1040.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.301	1	45.389	44.889	45.889	0.08754								0	0	0	0.23884	1	8766	8766		11.64	0.81637	1				995	1564	639	647	1466	1466					-0.0007765216796542518
AYSTVPGYYSW	11	Unmodified	_AYSTVPGYYSW_					0	0	0		nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7	nc|ENSG00000165806|P55210-4|CASP7	nc|ENSG00000165806|P55210-4|CASP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.29248046875	2	647.292953	1292.57135	0.20739	0.00013424	-0.33897	-0.00021941	-0.13157	-8.5167E-05	647.2925717079518	71.69	0.84233	71.69	71.474	72.317	0					52	28	4	0	0	0	0.13541	2	16939	16890;16939		40.239	32.329	1	848670			996	4108	640	648	1467;1468	1468					-0.06322899456085906
AYSTVPGYYSW	11	Unmodified	_AYSTVPGYYSW_					0	0	0		nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7	nc|ENSG00000165806|P55210-4|CASP7	nc|ENSG00000165806|P55210-4|CASP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.2936401367188	2	647.292953	1292.57135	0.091383	5.9151E-05	-0.11441	-7.4058E-05	-0.02303	-1.4907E-05	647.292721263536	71.641	0.59553	71.699	71.437	72.033	0.058578					50	21	4	0	0	0	0.16959	4	16725	16706;16725;16768;16778		34.932	27.022	1	633990			997	4108	640	648	1469;1470;1471;1472	1470					-0.06322899456085906
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7565307617188	2	530.756538	1059.49852	0.10299	5.4664E-05	-0.037052	-1.9666E-05	0.06594	3.4998E-05	530.756480997847	35.046	0.68265	35.046	34.854	35.537	0					85	23	4	0	0	0	1.8728E-05	4	5827	5783;5827;5870;5920		140.63	96.775	1	1109500			998	2006	641	649	1473;1474;1475;1476	1474					-0.028846084588622034
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7565307617188	2	530.756538	1059.49852	0.19338	0.00010264	-0.12599	-6.687E-05	0.067386	3.5765E-05	530.7564375297725	35.012	0.68265	35.091	34.857	35.539	0.078827					93	27	4	0	0	0	3.513E-06	3	5683	5643;5683;5731		155.03	101.19	1	947270			999	2006	641	649	1477;1478;1479	1478					-0.028846084588622034
AYSVLFETF	9	Unmodified	_AYSVLFETF_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7870483398438	2	538.768583	1075.52261	0.27324	0.00014721	1.4085	0.00075888	1.6818	0.00090609	538.7694499761042	86.226	0.49687	86.226	86.003	86.5	0					33	18	2	0	0	0	0.011655	1	21399	21399		64.236	9.4628	1	225560			1000	3812	642	650	1480	1480					-0.012127680251978745
AYSVLFETF	9	Unmodified	_AYSVLFETF_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7687377929688	2	538.768583	1075.52261	0.55056	0.00029662	0.93965	0.00050626	1.4902	0.00080288	538.7691266030478	86.246	0.55455	86.271	86.008	86.563	0.025169					32	20	2	0	0	0	0.0076571	1	21209	21209		74.423	40.32	1	249490			1001	3812	642	650	1481	1481					-0.012127680251978745
AYSVLFETF	9	Unmodified	_AYSVLFETF_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7874145507812	2	538.768583	1075.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.518	1	86.546	86.046	87.046	0.027573								0	0	0	0.23884	1	21288	21288		11.64	0.81637	1				1002	3812	642	650	1482	1482					-0.012127680251978745
AYSYFYEAF	9	Unmodified	_AYSYFYEAF_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7511596679688	2	580.75039	1159.48623	0.77942	0.00045265	0.44351	0.00025757	1.2229	0.00071022	580.7505603993808	79.812	0.74513	79.812	79.452	80.197	0					50	25	2	0	0	0	0.24021	1	19429	19429		13.906	0.86358	1	281410			1003	1604	643	651	1483	1483					-0.08713644921908781
AYSYFYEAF	9	Unmodified	_AYSYFYEAF_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7506713867188	2	580.75039	1159.48623	0.60374	0.00035062	0.50172	0.00029137	1.1055	0.000642	580.7506058697824	79.77	0.89198	79.796	79.437	80.329	0.026428					64	31	3	0	0	0	0.19398	1	19272	19272		19.257	6.2145	1	160030			1004	1604	643	651	1484	1484					-0.08713644921908781
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.77105712890625	2	509.77146	1017.52837	-0.057044	-2.908E-05	0.20319	0.00010358	0.14614	7.4499E-05	509.77147187600957	58.525	1.7963	58.525	58.386	60.183	0					141	66	4	0	0	0	3.6101E-09	5	12904	12904;12950;12991;13042;13110		170.4	134.35	1	3791300			1005	2919	644	652	1485;1486;1487;1488;1489	1485					0.0203037527712695
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7714538574219	2	509.77146	1017.52837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.543	1	60.543	60.043	61.043	0								0	0	0	0.23884	1	13522	13522		11.64	0	1				1006	2919	644	652	1490	1490					0.0203037527712695
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7716979980469	2	509.77146	1017.52837	0.18127	9.2405E-05	0.031787	1.6204E-05	0.21306	0.00010861	509.7714187481018	58.438	1.402	58.508	58.291	59.693	0.070477					126	52	4	0	0	0	1.4475E-05	5	12720	12720;12769;12816;12912;12973		144.66	116.17	1	3150700			1007	2919	644	652	1491;1492;1493;1494;1495	1491					0.0203037527712695
AYTSQFVSL	9	Unmodified	_AYTSQFVSL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.25897216796875	2	508.258382	1014.50221	0.59189	0.00030083	-0.80804	-0.00041069	-0.21615	-0.00010986	508.2580194050356	67.032	0.44496	67.032	66.84	67.285	0					23	15	2	0	0	0	0.30757	1	15538	15538		5.7319	1.4026	1	98638			1008	5362	645	653	1496	1496					-0.004459386849816838
AYTSQFVSL	9	Unmodified	_AYTSQFVSL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2580261230469	2	508.258382	1014.50221	0.67382	0.00034248	-0.7258	-0.0003689	-0.051979	-2.6419E-05	508.25786948008704	66.961	0.31331	67.026	66.923	67.236	0.065071					16	10	2	0	0	0	0.2359	1	15348	15348		14.405	2.9107	1	78476			1009	5362	645	653	1497	1497					-0.004459386849816838
AYTTVLQEW	9	Unmodified	_AYTTVLQEW_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7777709960938	2	555.776939	1109.53933	0.19414	0.0001079	1.9266	0.0010708	2.1207	0.0011787	555.7779238331719	73.139	0.3455	73.139	72.909	73.254	0					15	11	2	0	0	0	0.056368	1	17378	17378		41.956	3.78	1	220720			1010	5283	646	654	1498	1498					-0.01106267139243755
AYTTVLQEW	9	Unmodified	_AYTTVLQEW_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7766723632812	2	555.776939	1109.53933	0.40578	0.00022552	1.7502	0.00097273	2.156	0.0011983	555.7776191499427	73.115	0.44122	73.167	72.897	73.338	0.052574					22	15	2	0	0	0	0.0068798	1	17200	17200		76.825	38.649	1	131400			1011	5283	646	654	1499	1499					-0.01106267139243755
AYVDKLEEL	9	Unmodified	_AYVDKLEEL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2845458984375	2	540.284597	1078.55464	0.59429	0.00032109	0.24755	0.00013375	0.84184	0.00045483	540.2844485043054	55.01	0.58442	55.01	54.827	55.411	0					49	21	3	0	0	0	0.026809	1	11878	11878		53.404	22.767	1	475310			1012	2130	647	655	1500	1500					0.01850599657973362
AYVDKLEEL	9	Unmodified	_AYVDKLEEL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2845458984375	2	540.284597	1078.55464	0.69911	0.00037772	0.024396	1.3181E-05	0.7235	0.0003909	540.2843696425978	54.991	0.50542	55.057	54.869	55.374	0.065128					49	20	3	0	0	0	0.029414	1	11682	11682		63.227	36.004	1	352950			1013	2130	647	655	1501	1501					0.01850599657973362
AYVEKVEKL	9	Unmodified	_AYVEKVEKL_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8106689453125	2	539.810782	1077.60701	0.11083	5.9825E-05	-0.20851	-0.00011255	-0.09768	-5.2729E-05	539.8105298231044	34.886	0.65798	34.886	34.676	35.334	0					50	24	3	0	0	0	0.12214	2	5725	5725;5778		27.629	3.6082	1	154200			1014	4125	648	656	1502;1503	1502					0.0713118279156788
AYVEKVEKL	9	Unmodified	_AYVEKVEKL_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8104858398438	2	539.810782	1077.60701	0.24858	0.00013419	-0.45574	-0.00024601	-0.20716	-0.00011183	539.8103603893674	34.777	0.60157	34.853	34.718	35.32	0.076244					45	24	3	0	0	0	0.23908	1	5602	5602		16.149	3.1066	1	114780			1015	4125	648	656	1504	1504					0.0713118279156788
AYVELVHHI	9	Unmodified	_AYVELVHHI_					0	0	0		nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF	nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1	nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.794921875	2	540.795466	1079.57638	-0.14066	-7.6068E-05	-0.3021	-0.00016337	-0.44276	-0.00023944	540.7952059874987	44.665	0.38229	44.665	44.502	44.884	0					22	13	2	0	0	0	0.0088567	1	8693	8693		70.716	47.567	1	80367			1016	1256	649	657	1505	1505					0.03977449197191163
AYVELVHHI	9	Unmodified	_AYVELVHHI_					0	0	0		nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF	nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1	nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7943115234375	2	540.795466	1079.57638	0.14321	7.7446E-05	-0.69272	-0.00037462	-0.54951	-0.00029717	540.7949429055489	44.579	0.28711	44.666	44.538	44.825	0.08754					23	10	3	0	0	0	0.0088567	2	8537	8537;8570		70.716	47.567	1	79947			1017	1256	649	657	1506;1507	1506					0.03977449197191163
AYVEWFNRL	9	Unmodified	_AYVEWFNRL_					0	0	0		nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B;RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3065185546875	2	599.306198	1196.59784	0.52882	0.00031693	0.34294	0.00020553	0.87176	0.00052245	599.3063240938264	69.634	0.59947	69.634	69.443	70.043	0					46	20	3	0	0	0	0.0089808	1	16296	16296		70.332	47.596	1	597530			1018	2928	650	658	1508	1508					0.0074083422589410475
AYVEWFNRL	9	Unmodified	_AYVEWFNRL_					0	0	0		nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B;RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3068237304688	2	599.306198	1196.59784	0.26962	0.00016158	0.73937	0.00044311	1.009	0.0006047	599.3065461701732	69.522	0.58401	69.585	69.358	69.942	0.062126					50	20	3	0	0	0	0.015341	2	16105	16105;16157		61.602	43.816	1	694780			1019	2928	650	658	1509;1510	1509					0.0074083422589410475
AYVGDLQTL	9	Unmodified	_AYVGDLQTL_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.25848388671875	2	490.258382	978.502212	0.47118	0.000231	-0.29173	-0.00014302	0.17945	8.7977E-05	490.25811427244423	64.057	0.44525	64.057	63.819	64.264	0					26	15	3	0	0	0	0.026809	1	14582	14582		53.404	13.165	1	124980			1020	689	651	659	1511	1511					0.012100613149868877
AYVGDLQTL	9	Unmodified	_AYVGDLQTL_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2586669921875	2	490.258382	978.502212	0.37543	0.00018406	-0.39219	-0.00019227	-0.01676	-8.2167E-06	490.2580298632	63.915	0.31583	63.986	63.886	64.202	0.071018					17	10	2	0	0	0	0.056368	1	14432	14432		41.956	12.115	1	150920			1021	689	651	659	1512	1512					0.012100613149868877
AYVGNLPRI	9	Unmodified	_AYVGNLPRI_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.79010009765625	2	501.790184	1001.56581	0.39055	0.00019597	-0.023115	-1.1599E-05	0.36743	0.00018437	501.79008519674915	53.66	1.1947	53.66	53.234	54.429	0					131	45	4	0	0	0	0.015682	2	11543	11497;11543		61.357	39.611	1	1303200			1022	624	652	660	1513;1514	1514					0.06509466542752307
AYVGNLPRI	9	Unmodified	_AYVGNLPRI_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.7903747558594	2	501.790184	1001.56581	0.43743	0.0002195	0.047909	2.404E-05	0.48533	0.00024354	501.79009946724017	53.638	1.1574	53.704	53.291	54.448	0.06543					138	49	4	0	0	0	0.065541	2	11388	11388;11436		39.957	24.11	1	1068300			1023	624	652	660	1515;1516	1515					0.06509466542752307
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(150)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7660522460938	2	560.765852	1119.51715	0.095652	5.3638E-05	-0.073967	-4.1478E-05	0.021685	1.216E-05	560.7658621205977	34.581	0.36381	34.581	34.337	34.701	0					38	13	3	0	0	0	1.3047E-05	2	5668	5626;5668		146.01	109.96	1	1694900			1024	2979	653	661	1517;1518	1518		190			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(150)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7659912109375	2	560.765852	1119.51715	0.13177	7.3893E-05	-0.25118	-0.00014085	-0.11941	-6.696E-05	560.7657578892298	34.842	1.6448	34.842	34.377	36.022	0					164	61	5	0	0	0	1.3047E-05	6	5757	5710;5757;5802;5847;5891;6075		146.01	103.91	1	2144200			1025	2979	653	661	1519;1520;1521;1522;1523;1524	1520		190			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(160)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7659301757812	2	560.765852	1119.51715	0.2621	0.00014698	-0.16862	-9.4554E-05	0.093486	5.2424E-05	560.7656838246629	37.055	6.0194	37.055	35.589	41.609	0					664	222	8	0	0	0	8.2367E-09	18	6388	6125;6171;6301;6343;6388;6432;6480;6527;6579;6622;6665;6711;6757;6806;6951;7051;7653;7659		161.89	117.49	1	1877000			1026	2979	653	661	1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541;1542	1529		190			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(57)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7654418945312	2	560.765852	1119.51715	-0.099666	-5.5889E-05	-0.89429	-0.00050149	-0.99396	-0.00055738	560.7653226978249	44.537	2.0613	44.537	44.359	46.42	0					97	72	2	0	0	0	0.054458	1	8679	8679		57.471	31.203	1	76079			1027	2979	653	661	1543	1543		190			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(57)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8264770507812	2	560.765852	1119.51715	-0.25099	-0.00014075	-0.44602	-0.00025011	-0.69701	-0.00039086	560.7655628769934	42.57	2.8434	42.57	41.575	44.418	0					142	100	2	0	0	0	0.054458	1	7877	7877		57.471	42.633	1	96437			1028	2979	653	661	1544	1544		190			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(150)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7660522460938	2	560.765852	1119.51715	0.18875	0.00010584	-0.22657	-0.00012705	-0.037818	-2.1207E-05	560.7658449103976	34.506	0.38181	34.582	34.336	34.718	0.076244					66	17	5	0	0	0	1.3047E-05	2	5525	5483;5525		146.01	103.91	1	2114300			1029	2979	653	661	1545;1546	1546		190			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(160)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7660522460938	2	560.765852	1119.51715	0.2174	0.00012191	-0.33128	-0.00018577	-0.11388	-6.3861E-05	560.7657477470805	34.773	1.2842	34.849	34.703	35.987	0.076248					158	51	6	0	0	0	8.2367E-09	5	5606	5562;5606;5656;5701;5744		161.89	117.49	1	2388600			1030	2979	653	661	1547;1548;1549;1550;1551	1548		190			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(160)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7660522460938	2	560.765852	1119.51715	0.3487	0.00019554	-0.2114	-0.00011855	0.1373	7.6992E-05	560.7656947452177	36.887	6.8277	36.969	35.684	42.512	0.081711					674	264	7	0	0	0	8.2367E-09	20	6240	5932;6067;6111;6159;6198;6240;6285;6333;6378;6425;6468;6515;6557;6598;6644;6911;6963;7021;7074;7117		161.89	117.49	1	2161500			1031	2979	653	661	1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571	1557		190			-0.03782770088673715
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7681884765625	2	552.768394	1103.52224	-0.052675	-2.9117E-05	-0.14256	-7.8803E-05	-0.19524	-0.00010792	552.7682859269544	44.532	2.1075	44.532	44.243	46.351	0					240	74	6	0	0	0	0.00052627	8	8672	8628;8672;8713;8756;8844;8936;8991;9154		131.3	89.203	1	3061800			1032	2979	653	662	1572;1573;1574;1575;1576;1577;1578;1579	1573					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.76904296875	2	552.768394	1103.52224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.59	1	47.59	47.09	48.09	0								0	0	0	0.18435	1	9585	9585		20.454	7.9221	1				1033	2979	653	662	1580	1580					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7683715820312	2	552.768394	1103.52224	0.20558	0.00011364	-0.20119	-0.00011121	0.0043956	2.4298E-06	552.7682407157781	44.444	2.1151	44.532	44.13	46.245	0.08754					233	79	6	0	0	0	0.00052627	8	8512	8466;8512;8556;8602;8651;8701;8745;8807		131.3	95.254	1	3240400			1034	2979	653	662	1581;1582;1583;1584;1585;1586;1587;1588	1582					-0.025384662260421464
AYVHTMIANT	10	Unmodified	_AYVHTMIANT_					0	0	0		ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7659912109375	2	560.776416	1119.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.057	1	36.139	35.639	36.639	0.081715								0	0	0	0.33341	1	5983	5983		7.9102	0	1				1035	5312	654	663	1589	1589					-0.01670804779791979
AYVKGGLSTF	10	Unmodified	_AYVKGGLSTF_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7818603515625	2	521.782025	1041.5495	0.2423	0.00012643	-0.3337	-0.00017412	-0.091398	-4.769E-05	521.7821140979142	46.91	0.49009	46.994	46.835	47.325	0.083096					23	18	2	0	0	0	0.095597	1	9253	9253		45.74	29.591	1	128010			1036	1770	655	664	1590	1590					0.030383405859765844
AYVKKSATF	9	Unmodified	_AYVKKSATF_					0	0	0			REV__ENST00000560620.1_1_15:44806831-44810879:+|nuORF	REV__ENST00000560620.1_1_15:44806831-44810879:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7664489746094	2	507.784567	1013.55458	0.28026	0.00014231	0.073887	3.7519E-05	0.35415	0.00017983	508.28617397051244	73.623	0.34864	73.676	73.482	73.831	0.052567					21	12	2	0	0	0	0.25051	1	17307	17307		7.9102	3.1541	1	80996	+		1037	9286	656	665	1591	1591					0.04834644448612835
AYVKRKIYEF	10	Unmodified	_AYVKRKIYEF_					0	0	0		nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.58294677734375	3	439.583562	1315.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.773	1	52.84	52.34	53.34	0.067173								0	0	0	0.33952	1	11020	11020		0.77653	0	1				1038	3200	657	666	1592	1592					0.0836222487394025
AYVKSYLL	8	Unmodified	_AYVKSYLL_					0	0	0		ENSG00000147041|ENST00000297875|SYTL5;nc|ENSG00000147041|Q8TDW5-2|SYTL5	ENSG00000147041|ENST00000297875|SYTL5	ENSG00000147041|ENST00000297875|SYTL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7763671875	2	478.776211	955.537869	0.098076	4.6957E-05	0.1644	7.8709E-05	0.26247	0.00012567	478.77619505429016	96.294	0.74661	96.333	96.037	96.784	0.039772					112	39	4	0	0	0	0.50159	1	24313	24313		12.532	3.9383	1	941940			1039	3310	658	667	1593	1593					0.058321435626680795
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8218383789062	2	547.821484	1093.62842	0.40031	0.0002193	0.13493	7.3918E-05	0.53524	0.00029322	547.8215314533234	71.43	1.3752	71.43	71.181	72.556	0					112	47	5	0	0	0	1.7467E-05	4	16852	16806;16852;16893;16944		141.83	97.968	1	5030600			1040	3132	659	668	1594;1595;1596;1597	1595					0.08534612610924341
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.82177734375	2	547.821484	1093.62842	0.42535	0.00023302	0.089559	4.9062E-05	0.51491	0.00028208	547.8214690270896	71.324	1.1871	71.383	70.967	72.154	0.058586					97	42	4	0	0	0	0.00070411	3	16669	16622;16669;16718		128.37	84.507	1	3907900			1041	3132	659	668	1598;1599;1600	1599					0.08534612610924341
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2453002929688	2	547.821484	1093.62842	0.20385	0.00011167	0.50593	0.00027716	0.70979	0.00038884	547.8214465609774	72.296	0.77309	72.352	71.921	72.694	0.055939					36	26	2	0	0	0	0.082308	1	16882	16882		48.346	26.809	1	70884			1042	3132	659	668	1601	1601					0.08534612610924341
AYVNTFHNI	9	Unmodified	_AYVNTFHNI_					0	0	0		ENST00000563874.5_2_16:28488839-28493793:-|nuORF;ENST00000561689.6_2_16:28488839-28493686:-|nuORF;nc|ENSG00000261832|Q13286-6|CLN3;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3	ENST00000563874.5_2_16:28488839-28493793:-|nuORF	ENST00000563874.5_2_16:28488839-28493793:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3007202148438	2	539.769448	1077.52434	0.40571	0.00021899	0.69661	0.00037601	1.1023	0.000595	539.7695798373007	47.155	0.38525	47.155	46.935	47.321	0					19	12	2	0	0	0	0.19376	1	9424	9424		25.399	3.6527	1	107920			1043	5164	660	669	1602	1602					-0.011317142165808036
AYVNTFHNI	9	Unmodified	_AYVNTFHNI_					0	0	0		ENST00000563874.5_2_16:28488839-28493793:-|nuORF;ENST00000561689.6_2_16:28488839-28493686:-|nuORF;nc|ENSG00000261832|Q13286-6|CLN3;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3	ENST00000563874.5_2_16:28488839-28493793:-|nuORF	ENST00000563874.5_2_16:28488839-28493793:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.30078125	2	539.769448	1077.52434	0.47704	0.00025749	-0.29686	-0.00016023	0.18018	9.7258E-05	539.7690808998696	47.03	0.38689	47.113	46.882	47.269	0.083096					22	14	2	0	0	0	0.15911	1	9265	9265		32.305	3.8186	1	74558			1044	5164	660	669	1603	1603					-0.011317142165808036
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7585144042969	2	487.758352	973.502152	0.09681	4.722E-05	0.43305	0.00021122	0.52986	0.00025844	487.7584052991089	58.092	0.36229	58.092	57.855	58.217	0					33	12	3	0	0	0	0.11964	2	12760	12760;12810		28.173	15.642	1	673540			1045	1571	661	670	1604;1605	1604					0.01434106105648425
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7579345703125	2	487.758352	973.502152	-0.10034	-4.8943E-05	-0.34703	-0.00016927	-0.44737	-0.00021821	487.75793585211164	58.373	0.39574	58.373	58.256	58.652	0					22	14	2	0	0	0	0.18003	1	12866	12866		20.871	3.7847	1	129840			1046	1571	661	670	1606	1606					0.01434106105648425
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7585144042969	2	487.758352	973.502152	0.11387	5.5542E-05	0.37564	0.00018322	0.48951	0.00023876	487.75833064393083	57.996	0.69009	58.064	57.869	58.559	0.068375					39	25	3	0	0	0	0.11964	3	12683	12588;12632;12683		28.173	11.231	1	532760			1047	1571	661	670	1607;1608;1609	1609					0.01434106105648425
AYVPLQFLF	9	Unmodified	_AYVPLQFLF_					0	0	0		ENST00000394507.5_2_7:91874335-91874458:-|nuORF;ENST00000340022.6_2_7:91874335-91874845:-|nuORF	ENST00000394507.5_2_7:91874335-91874458:-|nuORF	ENST00000394507.5_2_7:91874335-91874458:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.3052978515625	2	549.305136	1096.59572	0.43636	0.0002397	0.0058199	3.1969E-06	0.44218	0.00024289	549.30482483492	101.03	0.30863	101.03	100.93	101.23	0					24	16	2	0	0	0	0.21398	1	25866	25866		16.942	6.8684	1	49581			1048	6084	662	671	1610	1610					0.05128405488062526
AYVPLQFLF	9	Unmodified	_AYVPLQFLF_					0	0	0		ENST00000394507.5_2_7:91874335-91874458:-|nuORF;ENST00000340022.6_2_7:91874335-91874845:-|nuORF	ENST00000394507.5_2_7:91874335-91874458:-|nuORF	ENST00000394507.5_2_7:91874335-91874458:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3045043945312	2	549.305136	1096.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101	1	101.04	100.54	101.54	0.042839								0	0	0	0.23884	1	25696	25696		11.64	1.5664	1				1049	6084	662	671	1611	1611					0.05128405488062526
AYVRQFLS	8	Unmodified	_AYVRQFLS_					0	0	0			REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7444152832031	2	492.269084	982.523616	-0.2335	-0.00011495	0.18171	8.9448E-05	-0.051798	-2.5498E-05	492.2692765788131	42.92	0.46717	42.92	42.682	43.149	0					23	15	2	0	0	0	0.3576	1	8190	8190		5.7604	0	1	45117	+		1050	13293	663	672	1612	1612					0.03165491134382137
AYVTGNPAR	9	Unmodified	_AYVTGNPAR_					0	0	0		ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF	ENST00000532739.1_1_16:16450692-16458759:+|nuORF	ENST00000532739.1_1_16:16450692-16458759:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2623596191406	2	474.748516	947.482479	-0.080241	-3.8094E-05	-0.68716	-0.00032623	-0.7674	-0.00036432	474.7480688639397	52.24	0.46063	52.24	52.043	52.504	0					26	15	3	0	0	0	0.2491	1	11011	11011		8.5933	0.68312	1	119540			1051	7034	664	673	1613	1613					0.0066373009490234836
AYVTGNPAR	9	Unmodified	_AYVTGNPAR_					0	0	0		ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF	ENST00000532739.1_1_16:16450692-16458759:+|nuORF	ENST00000532739.1_1_16:16450692-16458759:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2626037597656	2	474.748516	947.482479	-0.018535	-8.7993E-06	-0.92909	-0.00044108	-0.94762	-0.00044988	474.74811007283813	52.222	0.32608	52.29	52.112	52.438	0.067169					23	13	2	0	0	0	0.2491	1	10889	10889		8.5933	3.3626	1	94786			1052	7034	664	673	1614	1614					0.0066373009490234836
AYVTHGQEP	9	Unmodified	_AYVTHGQEP_					0	0	0			REV__ENSG00000169418|ENST00000368680|NPR1	REV__ENSG00000169418|ENST00000368680|NPR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.723876953125	2	501.237981	1000.46141	-0.061208	-3.068E-05	1.9398	0.00097231	1.8786	0.00094163	501.2391482907237	31.775	0.19245	31.848	31.733	31.926	0.073782					12	8	2	0	0	0	0.2404	1	4714	4714		13.508	1.8676	1	11873	+		1053	10174	665	674	1615	1615					-0.03880280004614178
AYVTHGQEP	9	Unmodified	_AYVTHGQEP_					0	0	0			REV__ENSG00000169418|ENST00000368680|NPR1	REV__ENSG00000169418|ENST00000368680|NPR1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	501.237981	1000.46141	-0.1149	-5.7591E-05	3.5287	0.0017687	3.4138	0.0017111	501.23935455379365	31.8	0.17204	31.8	31.676	31.848	0	-0.023954	0.00096514	NaN	13.508	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15056	+		1054	10174	665	674							-0.03880280004614178
AYVVFVTTL	9	Unmodified	_AYVVFVTTL_					0	0	0		nc|ENSG00000008869|Q9P2D3-2|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-2|HEATR5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.789306640625	2	506.789318	1011.56408	0.44207	0.00022403	-0.26114	-0.00013234	0.18093	9.1692E-05	506.78912061947415	83.444	0.66808	83.444	83.173	83.841	0					51	22	4	0	0	0	0.073832	2	20490	20490;20544		38.151	15.003	1	668780			1055	402	666	675	1616;1617	1616					0.058764127341419226
AYVVFVTTL	9	Unmodified	_AYVVFVTTL_					0	0	0		nc|ENSG00000008869|Q9P2D3-2|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-2|HEATR5B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.78948974609375	2	506.789318	1011.56408	0.22696	0.00011502	0.1564	7.9263E-05	0.38336	0.00019429	506.7893263988835	83.405	0.64433	83.427	83.194	83.838	0.021744					59	22	4	0	0	0	0.13538	1	20326	20326		28.487	12.64	1	1094700			1056	402	666	675	1618	1618					0.058764127341419226
AYVVKVFSL	9	Unmodified	_AYVVKVFSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1089P|1|0.12|ENSG00000125730|chr19:6693049-6693049|C/G|missense_variant;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.3052978515625	2	513.305136	1024.59572	0.77623	0.00039844	-0.33994	-0.00017449	0.43629	0.00022395	513.3049372041829	66.668	0.73305	66.668	66.48	67.213	0					60	27	3	0	0	0	0.023873	2	15431	15386;15431		55.503	22.717	1	356340			1057	2305	667	676	1619;1620	1620					0.08440405488090619
AYVVKVFSL	9	Unmodified	_AYVVKVFSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1089P|1|0.12|ENSG00000125730|chr19:6693049-6693049|C/G|missense_variant;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.3050537109375	2	513.305136	1024.59572	0.68127	0.0003497	-0.38233	-0.00019625	0.29894	0.00015345	513.3048970102582	66.627	0.62564	66.693	66.558	67.184	0.065071					44	23	3	0	0	0	0.046885	1	15243	15243		63.961	31.175	1	451640			1058	2305	667	676	1621	1621					0.08440405488090619
AYWHHITR	8	Unmodified	_AYWHHITR_					0	0	0		ENSG00000206052|ENST00000382713|DOK6	ENSG00000206052|ENST00000382713|DOK6	ENSG00000206052|ENST00000382713|DOK6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7584838867188	2	542.277775	1082.541	0.14277	7.7423E-05	-1.857	-0.001007	-1.7143	-0.00092961	542.2770240575151	39.2	0.29082	39.2	39.057	39.347	0					14	10	2	0	0	0	0.3576	1	7018	7018		0.79363	0.10326	1	25413			1059	5527	668	677	1622	1622					0.0030283146002147987
AYYDGQYDG	9	Unmodified	_AYYDGQYDG_					0	0	0			REV__ENSG00000089116|ENST00000261731|LHX5	REV__ENSG00000089116|ENST00000261731|LHX5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2029418945312	2	526.203804	1050.39306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.954	1	67.019	66.519	67.519	0.065071								0	0	0	0.27935	1	15331	15331		3.2813	0	1		+		1060	8292	669	678	1623	1623					-0.13012569375132443
AYYEFKKQFF	10	Unmodified	_AYYEFKKQFF_					0	0	0		ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.5646667480469	3	457.564168	1369.67067	0.73655	0.00033702	-0.40256	-0.0001842	0.334	0.00015282	457.5641811191697	54.493	0.36089	54.493	54.192	54.553	0					21	15	2	0	0	0	0.43061	1	11665	11665		8.4443	4.5984	1	175260			1061	652	670	679	1624	1624					0.0006254322863696871
AYYEFKKQFF	10	Unmodified	_AYYEFKKQFF_					0	0	0		ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.56488037109375	3	457.564168	1369.67067	0.46647	0.00021344	-0.38382	-0.00017562	0.082651	3.7818E-05	457.5642798135876	54.391	0.29034	54.456	54.254	54.544	0.065128					24	12	3	0	0	0	0.39723	1	11517	11517		12.175	9.3315	1	208610			1062	652	670	679	1625	1625					0.0006254322863696871
AYYGNINFF	9	Unmodified	_AYYGNINFF_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7581176757812	2	554.758549	1107.50255	0.97742	0.00054223	-0.094871	-5.263E-05	0.88255	0.0004896	554.758133844271	80.274	0.76175	80.274	80.051	80.813	0					72	26	4	0	0	0	4.1078E-06	1	19542	19542		154.46	94.39	1	568990			1063	1203	671	680	1626	1626					-0.04690518965162482
AYYGNINFF	9	Unmodified	_AYYGNINFF_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7587890625	2	554.758549	1107.50255	0.86516	0.00047995	-0.24876	-0.000138	0.6164	0.00034195	554.7582629538712	80.263	0.85918	80.287	79.936	80.795	0.023605					95	30	5	0	0	0	3.5265E-09	1	19372	19372		170.55	130.59	1	436250			1064	1203	671	680	1627	1627					-0.04690518965162482
AYYNVKEI	8	Unmodified	_AYYNVKEI_					0	0	0			REV__tr|U7T1Z3|U7T1Z3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00695PE=4SV=1	REV__tr|U7T1Z3|U7T1Z3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00695PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7726745605469	2	500.260925	998.507297	0.38217	0.00019118	-1.8173	-0.00090912	-1.4351	-0.00071793	500.25992037400647	71.479	0.48683	71.479	71.239	71.726	0					26	16	2	0	0	0	0.35759	1	16802	16802		13.508	0	1	320470	+		1065	13256	672	681	1628	1628					0.007983651776157785
AYYPAQGVQQF	11	Unmodified	_AYYPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.3057861328125	2	636.306395	1270.59824	0.39059	0.00024854	0.16152	0.00010277	0.55211	0.00035131	636.3063710172659	60.254	0.46393	60.254	60.069	60.533	0					34	16	3	0	0	0	0.074726	1	13437	13437		51.63	37.724	1	142780			1066	1862	673	682	1629	1629					-0.02623790844904761
AYYPAQGVQQF	11	Unmodified	_AYYPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.306640625	2	636.306395	1270.59824	0.15309	9.7412E-05	0.26182	0.0001666	0.41491	0.00026401	636.3064954526241	60.157	0.39564	60.23	60.066	60.461	0.072594					28	13	3	0	0	0	0.19318	1	13280	13280		31.268	21.885	1	128610			1067	1862	673	682	1630	1630					-0.02623790844904761
AYYSEVLCF	9	Unmodified	_AYYSEVLCF_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.260009765625	2	547.746793	1093.47903	0.54077	0.0002962	-0.76996	-0.00042174	-0.22919	-0.00012554	547.7465855788167	57.613	0.27893	57.613	57.489	57.768	0					16	9	2	0	0	0	0.237	1	12627	12627		14.582	2.9414	1	71168			1068	3457	674	683	1631	1631					-0.06396700793970922
AYYYRKFF	8	Unmodified	_AYYYRKFF_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;ENSG00000116991|ENST00000674635|SIPA1L2	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3053588867188	2	579.292559	1156.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.83	1	104.83	104.33	105.33	0								0	0	0	0.38822	1	26987	26987		11.114	1.7313	1				1069	5303	675	684	1632	1632					-0.0014564931448148855
CAALWAQPW	9	Unmodified	_CAALWAQPW_					0	0	0		ENST00000448504.6_1_17:66255373-66303138:+|nuORF	ENST00000448504.6_1_17:66255373-66303138:+|nuORF	ENST00000448504.6_1_17:66255373-66303138:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.803955078125	2	523.249837	1044.48512	0.38019	0.00019893	1.1214	0.00058678	1.5016	0.00078571	523.2506112511613	100.97	0.24302	101.02	100.84	101.09	0.042839					24	16	2	0	0	0	0.25875	1	25663	25663		1.8442	0.36234	1	83005			1070	6555	676	685	1633	1633					-0.03534137771816859
CAFAFSAP	8	Unmodified	_CAFAFSAP_					0	0	0		ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.1834716796875	2	407.183632	812.352711	-0.03713	-1.5119E-05	-0.094826	-3.8611E-05	-0.13196	-5.373E-05	407.18349005916247	89.652	0.52187	89.686	89.437	89.959	0.034065					41	19	3	0	0	0	0.54081	1	22241	22241		0.79363	0	1	321000			1071	3100	677	686	1634	1634					-0.06097162508604015
CAFAFSAP	8	Unmodified	_CAFAFSAP_					0	0	0		ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	407.183632	812.352711	0.361	0.00014699	-0.35659	-0.0001452	0.0044119	1.7964E-06	407.1833568636093	89.856	0.57125	89.856	89.445	90.017	0	0.085225	-0.00011554	NaN	0.79363	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214390			1072	3100	677	686							-0.06097162508604015
CAFAFSAP	8	Unmodified	_CAFAFSAP_					0	0	0		ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	407.183632	812.352711	-0.03713	-1.5119E-05	-0.094826	-3.8611E-05	-0.13196	-5.373E-05	407.18349005916247	89.652	0.52187	89.686	89.437	89.959	0.034065	-0.085225	9.7632E-05	NaN	0.79363	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321000			1073	3100	677	686							-0.06097162508604015
CAFCFQMICGS	11	Unmodified	_CAFCFQMICGS_					0	0	0			REV__ENSG00000279761|ENST00000623930|OR5D13	REV__ENSG00000279761|ENST00000623930|OR5D13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1581726074219	3	403.823502	1208.44868	0.72171	0.00029144	0.55299	0.00022331	1.2747	0.00051475	403.82362551864315	55.416	0.4672	55.416	55.112	55.579	0					23	16	2	0	0	0	0.41254	1	11966	11966		1.4551	0.24029	1	76084	+		1074	11150	678	687	1635	1635					-0.14720842046676808
CAFLFGWLL	9	Unmodified	_CAFLFGWLL_					0	0	0			REV__ENSG00000182533|ENST00000343849|CAV3	REV__ENSG00000182533|ENST00000343849|CAV3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7413330078125	2	535.280606	1068.54666	0.53551	0.00028665	-1.1507	-0.00061594	-0.61517	-0.00032929	535.2799629756042	57.923	0.38235	57.991	57.752	58.134	0.068371					26	14	2	0	0	0	0.24749	1	12608	12608		5.2307	0.47466	1	101260	+		1075	10566	679	688	1636	1636					0.015127939274862001
CAKEDITYSG	10	Unmodified	_CAKEDITYSG_					0	0	0		nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7415161132812	2	543.742239	1085.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.919	1	28.919	28.419	29.419	0								0	0	0	0.34018	1	3980	3980		0	0	1				1076	5570	680	689	1637	1637					-0.0693909415035705
CAQRTESS	8	Unmodified	_CAQRTESS_					0	0	0		ENST00000586107.1_1_19:19380531-19384159:-|nuORF	ENST00000586107.1_1_19:19380531-19384159:-|nuORF	ENST00000586107.1_1_19:19380531-19384159:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7991027832031	2	441.192716	880.37088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.64	1	98.682	98.182	99.182	0.041931								0	0	0	0.38822	1	24979	24979		5.2307	2.6532	1				1077	7239	681	690	1638	1638					-0.07409072324549015
CARAFLWQ	8	Unmodified	_CARAFLWQ_					0	0	0			REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF	REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.2485656738281	2	497.750005	993.485456	-0.09395	-4.6764E-05	1.9353	0.00096328	1.8413	0.00091652	497.75105494444017	26.136	0.39579	26.136	25.971	26.366	0					53	32	2	0	0	0	0.54097	1	3141	3141		0.69038	0.088878	1	40275	+		1078	11343	682	691	1639	1639					-0.011547180519414724
CARAFLWQ	8	Unmodified	_CARAFLWQ_					0	0	0			REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF	REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2519226074219	2	497.750005	993.485456	-0.0026315	-1.3098E-06	2.228	0.001109	2.2254	0.0011077	497.75111922981966	25.985	0.31867	26.077	25.94	26.259	0.091507					46	28	2	0	0	0	0.54097	1	2987	2987		0.69038	0.69038	1	37042	+		1079	11343	682	691	1640	1640					-0.011547180519414724
CARRPLHLL	9	Unmodified	_CARRPLHLL_					0	0	0			REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8184814453125	2	539.818753	1077.62295	0.34102	0.00018409	-0.68769	-0.00037123	-0.34667	-0.00018714	539.8182044933305	95.973	0.46381	95.973	95.723	96.187	0					63	23	3	0	0	0	0.17247	2	24302	24302;24344		21.747	9.2151	1	399000	+		1080	11700	683	692	1641;1642	1641					0.0872461054748328
CARRPLHLL	9	Unmodified	_CARRPLHLL_					0	0	0			REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.747802734375	2	539.818753	1077.62295	0.34102	0.00018409	-0.68769	-0.00037123	-0.34667	-0.00018714	539.8182044933305	95.973	0.46381	95.973	95.723	96.187	0					63	23	3	0	0	0	0.23598	1	24272	24272		15.847	15.847	1	399000	+		1081	11700	683	692	1643	1643					0.0872461054748328
CARRPLHLL	9	Unmodified	_CARRPLHLL_					0	0	0			REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8184204101562	2	539.818753	1077.62295	0.45313	0.00024461	-0.95203	-0.00051392	-0.4989	-0.00026932	539.8181121163536	95.893	0.49514	95.931	95.687	96.182	0.038864					44	22	3	0	0	0	0.17247	1	24127	24127		21.747	9.2151	1	315870	+		1082	11700	683	692	1644	1644					0.0872461054748328
CAVHLCALAI	10	Unmodified	_CAVHLCALAI_					0	0	0			REV__nc|ENSG00000112237|P24863-2|CCNC	REV__nc|ENSG00000112237|P24863-2|CCNC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.26666259765625	2	507.267173	1012.51979	0.23059	0.00011697	-0.99689	-0.00050569	-0.7663	-0.00038872	507.2664601122809	38.849	0.46006	38.936	38.717	39.178	0.08688					38	17	3	0	0	0	0.31512	1	6813	6813		12.532	0.3568	1	123610	+		1083	8709	684	693	1645	1645					0.014033620446411987
CAVLEQARSSV	11	Unmodified	_CAVLEQARSSV_					0	0	0			REV__PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant	REV__PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7996215820312	2	581.79788	1161.58121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.168	1	36.168	35.668	36.668	0								0	0	0	0.33908	1	6138	6138		1.0715	0.10919	1		+		1084	10910	685	694	1646	1646					0.006879652776206058
CCCCPTRRME	10	Unmodified	_CCCCPTRRME_					0	0	0		ENST00000481801.5_1_2:134877617-135011878:+|nuORF	ENST00000481801.5_1_2:134877617-135011878:+|nuORF	ENST00000481801.5_1_2:134877617-135011878:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2246704101562	2	601.223799	1200.43304	0.56276	0.00033835	0.48448	0.00029128	1.0472	0.00062963	601.2240115432686	93.507	1.3575	93.545	92.891	94.249	0.037369					160	61	4	0	0	0	0.45945	1	23361	23361		2.9952	2.9952	1	408910			1085	6755	686	695	1647	1647					-0.1591545183537164
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.1494445800781	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.912	1	63.983	63.483	64.483	0.071018								0	0	0	0.38822	1	14409	14409		0	0	1				1086	5498	687	696	1648	1648					-0.24150106180752573
CCHLCHSDDM	10	Unmodified	_CCHLCHSDDM_					0	0	0			REV__nc|ENSG00000099139|Q92824|PCSK5	REV__nc|ENSG00000099139|Q92824|PCSK5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.1905517578125	2	582.190479	1162.3664	0.23352	0.00013595	-0.39078	-0.00022751	-0.15726	-9.1554E-05	582.1901410272989	35.291	0.81353	35.291	34.776	35.589	0					39	28	2	0	0	0	0.47288	2	5762	5762;5883		0.45834	0.057624	1	26204	+		1087	8352	688	697	1649;1650	1649					-0.20828364125645749
CCHLCHSDDM	10	Unmodified	_CCHLCHSDDM_					0	0	0			REV__nc|ENSG00000099139|Q92824|PCSK5	REV__nc|ENSG00000099139|Q92824|PCSK5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.1893310546875	2	582.190479	1162.3664	0.38694	0.00022527	-0.53681	-0.00031253	-0.14987	-8.7253E-05	582.190283006264	37.087	0.9486	37.087	36.751	37.7	0					53	35	2	0	0	0	0.47288	1	6371	6371		0.45834	0.057624	1	33249	+		1088	8352	688	697	1651	1651					-0.20828364125645749
CCHLCHSDDM	10	Unmodified	_CCHLCHSDDM_					0	0	0			REV__nc|ENSG00000099139|Q92824|PCSK5	REV__nc|ENSG00000099139|Q92824|PCSK5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7805786132812	2	582.190479	1162.3664	0.38694	0.00022527	-0.53681	-0.00031253	-0.14987	-8.7253E-05	582.190283006264	37.087	0.9486	37.087	36.751	37.7	0					53	35	2	0	0	0	0.31852	1	6421	6421		0.45834	0	1	33249	+		1089	8352	688	697	1652	1652					-0.20828364125645749
CCHLCHSDDM	10	Unmodified	_CCHLCHSDDM_					0	0	0			REV__nc|ENSG00000099139|Q92824|PCSK5	REV__nc|ENSG00000099139|Q92824|PCSK5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.1903686523438	2	582.190479	1162.3664	0.49751	0.00028965	-0.5242	-0.00030518	-0.026685	-1.5536E-05	582.1901819456815	36.937	0.65417	37.019	36.717	37.371	0.081711					35	25	2	0	0	0	0.47288	1	6194	6194		0.45834	0	1	32375	+		1090	8352	688	697	1653	1653					-0.20828364125645749
CCIIHPESL	9	Unmodified	_CCIIHPESL_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7400207519531	2	507.740988	1013.46742	0.17979	9.1289E-05	-2.3318	-0.0011839	-2.152	-0.0010926	507.7396442834792	46.642	0.31406	46.725	46.65	46.964	0.083096					20	15	2	0	0	0	0.21398	1	9181	9181		16.942	3.0362	1	109000			1091	4582	689	698	1654	1654					-0.03877221088976057
CCPMFYFSII	10	Unmodified	_CCPMFYFSII_					0	0	0			REV__nc|ENSG00000103502|O14735-2|CDIPT	REV__nc|ENSG00000103502|O14735-2|CDIPT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.26904296875	2	612.268524	1222.52249	0.26541	0.0001625	0.80679	0.00049397	1.0722	0.00065647	612.2688110694537	75.9	1.7999	75.944	75.328	77.128	0.044037					186	85	3	0	0	0	0.41688	4	18017	17978;18017;18052;18091		10.074	10.074	1	4638300	+		1092	8482	690	699	1655;1656;1657;1658	1656					-0.07986550612713472
CCPMFYFSII	10	Unmodified	_CCPMFYFSII_					0	0	0			REV__nc|ENSG00000103502|O14735-2|CDIPT	REV__nc|ENSG00000103502|O14735-2|CDIPT	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	612.268524	1222.52249	0.26541	0.0001625	0.80679	0.00049397	1.0722	0.00065647	612.2688110694537	75.9	1.7999	75.944	75.328	77.128	0.044037	0.032797	-3.26E-05	NaN	10.074	186	85	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4638300	+		1093	8482	690	699							-0.07986550612713472
CCPPFPLE	8	Unmodified	_CCPPFPLE_					0	0	0			REV__ENST00000439955.1_1_2:118593974-118594413:+|nuORF	REV__ENST00000439955.1_1_2:118593974-118594413:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2099609375	2	453.198425	904.382296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.61	1	88.61	88.11	89.11	0								0	0	0	0.38822	1	22082	22082		0.79363	0	1		+		1094	11880	691	700	1659	1659					-0.0737196655477419
CCTLITCPTF	10	Unmodified	_CCTLITCPTF_					0	0	0		ENST00000460849.5_1_3:55640917-55717870:-|nuORF	ENST00000460849.5_1_3:55640917-55717870:-|nuORF	ENST00000460849.5_1_3:55640917-55717870:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2423706054688	2	551.242506	1100.47046	0.45596	0.00025134	-0.54883	-0.00030254	-0.092866	-5.1192E-05	551.2420455980001	52.618	0.83841	52.685	52.247	53.085	0.067169					60	34	2	0	0	0	0.33099	1	10959	10959		19.257	2.3147	1	79908			1095	6607	692	701	1660	1660					-0.07575714026461355
CCVHVTHY	8	Unmodified	_CCVHVTHY_					0	0	0			REV__ENST00000468127.1_1_7:137684448-137686451:-|nuORF	REV__ENST00000468127.1_1_7:137684448-137686451:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7503967285156	2	481.204573	960.394592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.96	1	29.039	28.539	29.539	0.078287								0	0	0	0.38822	1	3867	3867		0.79363	0	1		+		1096	12015	693	702	1661	1661					-0.08718930091720267
CCYLSFVGLS	10	Unmodified	_CCYLSFVGLS_					0	0	0			REV__ENST00000358791.9_1_20:49493148-49493457:+|nuORF	REV__ENST00000358791.9_1_20:49493148-49493457:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7576904296875	2	546.248646	1090.48274	0.05056	2.7618E-05	-0.18368	-0.00010034	-0.13312	-7.2719E-05	546.2484593191758	44.892	0.6105	44.98	44.76	45.37	0.08754					36	23	2	0	0	0	0.31616	1	8617	8617		10.074	2.7847	1	72598	+		1097	11523	694	703	1662	1662					-0.05888354291755604
CDDCRNGGTCL	11	Unmodified	_CDDCRNGGTCL_					0	0	0		nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7134399414062	2	578.712633	1155.41071	0.45034	0.00026062	0.79055	0.0004575	1.2409	0.00071812	578.7130907185281	74.515	0.62479	74.515	74.31	74.935	0					38	22	2	0	0	0	0.40796	1	17839	17839		2.4985	0.19575	1	217710			1098	3837	695	704	1663	1663					-0.1607763670776876
CDEVWAQL	8	Unmodified	_CDEVWAQL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7159729003906	2	482.21566	962.416767	-0.37982	-0.00018316	-0.96013	-0.00046299	-1.34	-0.00064615	482.21585514669175	31.566	1.0277	31.566	30.889	31.917	0					98	46	3	0	0	0	0.34837	1	4800	4800		21.747	0	1	128320	+		1099	10273	696	705	1664	1664					-0.06594427142329096
CDEVWAQL	8	Unmodified	_CDEVWAQL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2133483886719	2	482.21566	962.416767	-0.35122	-0.00016936	-2.067	-0.00099673	-2.4182	-0.0011661	482.21487156519714	30.343	0.70761	30.418	30.211	30.919	0.075403					93	43	3	0	0	0	0.4772	1	4301	4301		15.847	0	1	116070	+		1100	10273	696	705	1665	1665					-0.06594427142329096
CDEVWAQL	8	Unmodified	_CDEVWAQL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7158508300781	2	482.21566	962.416767	-0.33619	-0.00016211	-1.1193	-0.00053973	-1.4555	-0.00070185	482.2154730898941	31.474	0.98313	31.548	30.917	31.9	0.07378					88	48	2	0	0	0	0.3576	1	4710	4710		4.3292	0	1	102310	+		1101	10273	696	705	1666	1666					-0.06594427142329096
CDEVWAQL	8	Unmodified	_CDEVWAQL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7158508300781	2	482.21566	962.416767	-0.35122	-0.00016936	-2.067	-0.00099673	-2.4182	-0.0011661	482.21487156519714	30.343	0.70761	30.418	30.211	30.919	0.075403					93	43	3	0	0	0	0.34837	1	4252	4252		21.747	0	1	116070	+		1102	10273	696	705	1667	1667					-0.06594427142329096
CDHDGGPRLFS	11	Unmodified	_CDHDGGPRLFS_					0	0	0			REV__ENST00000466110.5_1_2:74595806-74598423:-|nuORF	REV__ENST00000466110.5_1_2:74595806-74598423:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2633056640625	2	602.264204	1202.51386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.928	1	27.928	27.428	28.428	0								0	0	0	0.34125	1	3688	3688		0.30703	0.30703	1		+		1103	10958	697	706	1668	1668					-0.07930064933293579
CDSGVTCALW	10	Unmodified	_CDSGVTCALW_					0	0	0			REV__tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	REV__tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.70703125	2	527.720252	1053.42595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.099	1	38.099	37.599	38.599	0								0	0	0	0.33738	1	6720	6720		3.2813	1.4371	1		+		1104	13147	698	707	1669	1669					-0.09862401848295121
CDTVTTLRGK	10	Unmodified	_CDTVTTLRGK_					0	0	0			REV__ENST00000305641.6_1_15:43622700-43622757:-|nuORF	REV__ENST00000305641.6_1_15:43622700-43622757:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.75732421875	2	547.287148	1092.55974	0.22464	0.00012294	2.8531	0.0015615	3.0778	0.0016844	547.2884675454428	49.343	0.50183	49.343	49.032	49.534	0					26	17	2	0	0	0	0.31616	1	10143	10143		10.074	5.7447	1	44430	+		1105	11355	699	708	1670	1670					0.01716580248921673
CDTVTTLRGK	10	Unmodified	_CDTVTTLRGK_					0	0	0			REV__ENST00000305641.6_1_15:43622700-43622757:-|nuORF	REV__ENST00000305641.6_1_15:43622700-43622757:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7573852539062	2	547.287148	1092.55974	0.16434	8.9944E-05	3.4023	0.001862	3.5666	0.001952	547.2887500372316	49.237	0.40023	49.314	49.056	49.456	0.076607					20	14	2	0	0	0	0.31616	1	9980	9980		6.2058	0	1	32442	+		1106	11355	699	708	1671	1671					0.01716580248921673
CEEEEDCD	8	Unmodified	_CEEEEDCD_					0	0	0			REV__ENSG00000176635|ENST00000336726|HORMAD2	REV__ENSG00000176635|ENST00000336726|HORMAD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.1327209472656	2	486.133873	970.253192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.314	1	99.357	98.857	99.857	0.042839								0	0	0	0.38822	1	25180	25180		0	0	1		+		1107	10409	700	709	1672	1672					-0.23312437766185212
CEGHNSDF	8	Unmodified	_CEGHNSDF_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3	ENSG00000198626|ENST00000366574|RYR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2153015136719	2	454.663792	907.313031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.747	1	59.747	59.247	60.247	0								0	0	0	0.38822	1	13279	13279		4.756	2.4533	1				1108	5384;5416	701	710	1673	1673					-0.14433334249974905
CEGHNSDF	8	Unmodified	_CEGHNSDF_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3	ENSG00000198626|ENST00000366574|RYR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.662841796875	2	454.663792	907.313031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.34	1	60.34	59.84	60.84	0								0	0	0	0.38822	1	13460	13460		4.756	2.4533	1				1109	5384;5416	701	710	1674	1674					-0.14433334249974905
CELPIPYAF	9	Unmodified	_CELPIPYAF_					0	0	0			REV__ENST00000513912.1_1_5:140073076-140073352:+|nuORF	REV__ENST00000513912.1_1_5:140073076-140073352:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2483520507812	2	526.759704	1051.50485	0.17098	9.0063E-05	1.6572	0.00087292	1.8281	0.00096298	527.2613883169795	49.626	0.9638	49.626	49.004	49.968	0					51	33	2	0	0	0	0.24263	1	10035	10035		12.532	4.6214	1	64305	+		1110	12267	702	711	1675	1675					-0.018838065517229552
CESVHHAEL	9	Unmodified	_CESVHHAEL_					0	0	0			REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7301025390625	2	512.729466	1023.44438	0.47197	0.00024199	0.26665	0.00013672	0.73862	0.00037871	512.7295591433043	74.803	0.60624	74.803	74.452	75.058	0					63	22	4	0	0	0	0.26684	1	17831	17831		10.824	0	1	435520	+		1111	12168	703	712	1676	1676					-0.06640523882072102
CEYKQGKPEQV	11	Unmodified	_CEYKQGKPEQV_					0	0	0			REV__ENST00000511439.5_1_3:133368770-133375581:-|nuORF	REV__ENST00000511439.5_1_3:133368770-133375581:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2573547363281	3	436.879939	1307.61799	0.68887	0.00030095	-0.41828	-0.00018274	0.27059	0.00011821	437.21438660127666	92.269	2.5294	92.269	91.209	93.738	0					130	96	2	0	0	0	0.31097	1	23518	23518		1.2148	0.80657	1	166620	+		1112	9956	704	713	1677	1677					-0.02351782896471377
CFCGYKMYAI	10	Unmodified	_CFCGYKMYAI_					0	0	0			REV__ENSG00000069764|ENST00000438167|PLA2G10	REV__ENSG00000069764|ENST00000438167|PLA2G10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7593994140625	2	599.758323	1197.50209	0.44928	0.00026946	1.5432	0.00092554	1.9925	0.001195	599.7591542481654	55.842	0.59383	55.842	55.441	56.035	0					35	20	2	0	0	0	0.31616	1	12079	12079		10.074	0	1	132260	+		1113	8140	705	714	1678	1678					-0.08875721272511328
CFDIFYSGF	9	Unmodified	_CFDIFYSGF_					0	0	0			REV__ENST00000496334.6_1_2:64083556-64109621:+|nuORF	REV__ENST00000496334.6_1_2:64083556-64109621:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7500610351562	2	549.733686	1097.45282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.472	1	68.536	68.036	69.036	0.063507								0	0	0	0.2722	1	15788	15788		4.756	1.1595	1		+		1114	12184	706	715	1679	1679					-0.09200969965445438
CFGLAMFYLL	10	Unmodified	_CFGLAMFYLL_					0	0	0		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2927856445312	2	589.292856	1176.57116	0.62155	0.00036628	-0.20992	-0.00012371	0.41163	0.00024257	589.2923428908391	69.095	1.2117	69.095	68.749	69.961	0					77	43	3	0	0	0	0.28032	2	16100	16100;16193		24.674	0	1	1220500			1115	1735	707	716	1680;1681	1680					-0.01006313981315543
CFGVGFEP	8	Unmodified	_CFGVGFEP_					0	0	0			REV__ENSG00000188585|ENST00000623247|CLEC20A	REV__ENSG00000188585|ENST00000623247|CLEC20A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	428.1888122558594	2	428.188914	854.363275	0.15111	6.4704E-05	-0.19039	-8.1524E-05	-0.039282	-1.682E-05	428.1887755091135	87.98	1.9293	88.01	87.504	89.433	0.030037					123	74	2	0	0	0	0.54081	1	21757	21757		0.79363	0	1	1018700	+		1116	10773	708	717	1682	1682					-0.06973179854185219
CFIFCWFPN	9	Unmodified	_CFIFCWFPN_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7556762695312	2	588.753898	1175.49324	0.47495	0.00027963	1.4168	0.00083414	1.8917	0.0011138	588.7546140798548	38.1	0.34193	38.1	37.96	38.302	0					16	11	2	0	0	0	0.34646	1	6732	6732		0.6015	0.076735	1	24200			1117	2736	709	718	1683	1683					-0.08748326846671262
CFQYVVLL	8	Unmodified	_CFQYVVLL_					0	0	0			REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|68	REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|68	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7659606933594	2	492.764789	983.515025	0.54636	0.00026923	1.4302	0.00070473	1.9765	0.00097396	492.7652929175571	69.079	0.26363	69.079	68.868	69.132	0					13	9	2	0	0	0	0.45077	1	16116	16116		19.439	4.6007	1	86482	+		1118	7786	710	719	1684	1684					0.022608011735542277
CFRNKFYNI	9	Unmodified	_CFRNKFYNI_					0	0	0			REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.7860107421875	2	602.800226	1203.5859	0.69109	0.00041659	-1.864	-0.0011236	-1.1729	-0.00070705	603.3005236788068	70.228	0.56468	70.228	69.991	70.555	0					31	21	2	0	0	0	0.24021	1	16504	16504		13.906	3.1065	1	205170	+		1119	11432	711	720	1685	1685					-0.007751057889208823
CFRNKFYNI	9	Unmodified	_CFRNKFYNI_					0	0	0			REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.7857055664062	2	602.800226	1203.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.266	1	70.326	69.826	70.826	0.060562								0	0	0	0.22786	1	16334	16334		13.906	1.6654	1		+		1120	11432	711	720	1686	1686					-0.007751057889208823
CFRSSDNMWK	10	Unmodified	_CFRSSDNMWK_					0	0	0			REV__ENST00000300417.10_1_9:130248035-130251759:+|nuORF	REV__ENST00000300417.10_1_9:130248035-130251759:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.18670654296875	3	425.186597	1272.53796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.225	1	69.225	68.725	69.725	0								0	0	0	0.33681	1	16170	16170		1.9064	0.71303	1		+		1121	11342	712	721	1687	1687					-0.08740547771299134
CFSSSREVN	9	Unmodified	_CFSSSREVN_					0	0	0		ENST00000366769.7_1_1:227505320-227505512:-|nuORF	ENST00000366769.7_1_1:227505320-227505512:-|nuORF	ENST00000366769.7_1_1:227505320-227505512:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7379760742188	2	514.726923	1027.43929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.438	1	43.527	43.027	44.027	0.088924								0	0	0	0.25573	1	8204	8204		8.1555	0.8663	1				1122	6170	713	722	1688	1688					-0.07332827744676251
CFWLVLHWQG	10	Unmodified	_CFWLVLHWQG_					0	0	0		ENST00000492568.1_1_1:230398906-230399248:+|nuORF	ENST00000492568.1_1_1:230398906-230399248:+|nuORF	ENST00000492568.1_1_1:230398906-230399248:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.8179321289062	2	644.818418	1287.62228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.525	1	30.525	30.025	31.025	0								0	0	0	0.33979	1	4452	4452		0.45834	0.057624	1				1123	6815	714	723	1689	1689					-0.010022288922527878
CFWSLTLNEVV	11	Unmodified	_CFWSLTLNEVV_					0	0	0			REV__ENST00000399541.6_1_17:6888609-6888696:-|nuORF	REV__ENST00000399541.6_1_17:6888609-6888696:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5552978515625	3	437.553163	1309.63766	-0.23093	-0.00010104	1.0372	0.00045381	0.80624	0.00035277	437.5537750589123	40.24	1.437	40.33	39.858	41.295	0.089645					116	55	3	0	0	0	0.4167	1	7147	7147		0.50596	0	1	133730	+		1124	11748	715	724	1690	1690					-0.004774068857159364
CFYLGYTWL	9	Unmodified	_CFYLGYTWL_					0	0	0			REV__ENSG00000174937|ENST00000641993|OR5M3	REV__ENSG00000174937|ENST00000641993|OR5M3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2721557617188	2	583.272978	1164.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.18	1	102.22	101.72	102.72	0.042656								0	0	0	0.27427	1	26047	26047		4.3292	0.38484	1		+		1125	10364	716	725	1691	1691					-0.04428117660359021
CFYYYFYF	8	Unmodified	_CFYYYFYF_					0	0	0		ENST00000557252.1_1_12:56743718-56743955:-|nuORF	ENST00000557252.1_1_12:56743718-56743955:-|nuORF	ENST00000557252.1_1_12:56743718-56743955:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.83489990234375	3	405.833378	1214.47831	-0.0049936	-2.0266E-06	3.52	0.0014285	3.515	0.0014265	405.83456415733673	60.103	0.28838	60.175	60.044	60.332	0.072338					15	10	2	0	0	0	0.53926	1	13281	13281		1.8442	0.6509	1	70151			1126	7132	717	726	1692	1692					-0.12035495443046784
CGCSPGHF	8	Unmodified	_CGCSPGHF_					0	0	0		ENST00000496064.5_1_1:2488103-2492154:+|nuORF;ENST00000463471.6_1_1:2490981-2492960:+|nuORF;nc|ENSG00000157873|Q92956-2|TNFRSF14;ENST00000475523.5_1_1:2490981-2494709:+|nuORF;ENSG00000157873|ENST00000355716|TNFRSF14	ENST00000496064.5_1_1:2488103-2492154:+|nuORF	ENST00000496064.5_1_1:2488103-2492154:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1494140625	2	404.149266	806.283979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.336	1	35.415	34.915	35.915	0.078827								0	0	0	0.38822	1	5767	5767		0.79363	0.10326	1				1127	3669	718	727	1693	1693					-0.12691150079956515
CGFVGEPF	8	Unmodified	_CGFVGEPF_					0	0	0			REV__ENST00000526770.5_1_11:67378371-67379926:+|nuORF	REV__ENST00000526770.5_1_11:67378371-67379926:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	428.1888122558594	2	428.188914	854.363275	0.44493	0.00019052	-1.6355	-0.0007003	-1.1906	-0.00050978	428.188565280329	87.306	0.57942	87.306	87.024	87.603	0					57	22	4	0	0	0	0.53771	1	21666	21666		2.8892	0.58649	1	1212500	+		1128	12332	719	728	1694	1694					-0.0697317985417385
CGFVGEPF	8	Unmodified	_CGFVGEPF_					0	0	0			REV__ENST00000526770.5_1_11:67378371-67379926:+|nuORF	REV__ENST00000526770.5_1_11:67378371-67379926:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	428.1890563964844	2	428.188914	854.363275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.874	1	87.874	87.374	88.374	0								0	0	0	0.38822	1	21861	21861		2.8892	0.31174	1		+		1129	12332	719	728	1695	1695					-0.0697317985417385
CGIVPQLQN	9	Unmodified	_CGIVPQLQN_					0	0	0		ENSG00000182521|ENST00000247219|TBPL2	ENSG00000182521|ENST00000247219|TBPL2	ENSG00000182521|ENST00000247219|TBPL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.261474609375	2	486.252577	970.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.116	1	38.202	37.702	38.702	0.08688								0	0	0	0.2722	1	6599	6599		4.756	0	1				1130	4880	720	729	1696	1696					0.004175410200105034
CGKKKRQI	8	Unmodified	_CGKKKRQI_					0	0	0		ENST00000519593.1_1_7:27212405-27212492:-|nuORF	ENST00000519593.1_1_7:27212405-27212492:-|nuORF	ENST00000519593.1_1_7:27212405-27212492:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.79180908203125	2	480.792204	959.569854	0.21029	0.00010111	-1.0948	-0.00052638	-0.88452	-0.00042527	480.7916204483838	100.46	0.51212	100.5	100.32	100.83	0.042839					49	28	2	0	0	0	0.53817	1	25628	25628		2.5775	0.27475	1	192320			1131	6947	721	730	1697	1697					0.08845232764815592
CGLLGFVLDLK	11	Unmodified	_CGLLGFVLDLK_					0	0	0		nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3343505859375	2	589.33611	1176.65767	0.057618	3.3956E-05	-1.3562	-0.00079924	-1.2986	-0.00076528	589.3344391011286	58.542	1.1714	58.542	58.386	59.558	0					82	42	5	0	0	0	0.056053	2	12910	12910;12960		56.177	12.319	1	1006600			1132	3646	722	731	1698;1699	1698					0.0764038884490219
CGPRGGHF	8	Unmodified	_CGPRGGHF_					0	0	0		nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF	nc|ENSG00000130731|Q96S19-2|METTL26	nc|ENSG00000130731|Q96S19-2|METTL26	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.5571594238281	2	415.689947	829.365341	-0.15153	-6.2991E-05	2.9508	0.0012266	2.7993	0.0011636	415.6917054796343	33.834	0.096741	33.908	33.826	33.923	0.074322					7	4	2	0	0	0	0.3576	1	5303	5303		0.79363	0.79363	1	4388.8			1133	6559	723	732	1700	1700					-0.056167063257021255
CGRFHPLQF	9	Unmodified	_CGRFHPLQF_					0	0	0			REV__ENST00000416600.6_1_20:3846925-3847768:+|nuORF	REV__ENST00000416600.6_1_20:3846925-3847768:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.239501953125	2	552.774011	1103.53347	0.61471	0.0003398	-0.6595	-0.00036456	-0.044792	-2.476E-05	552.7731372917862	64.008	0.20138	64.079	63.914	64.115	0.071022					8	6	2	0	0	0	0.25579	1	14415	14415		4.3292	0	1	88084	+		1134	11798	724	733	1701	1701					-0.014156441319073565
CGSPHFCG	8	Unmodified	_CGSPHFCG_					0	0	0		ENST00000417775.5_1_1:75198678-75198738:-|nuORF	ENST00000417775.5_1_1:75198678-75198738:-|nuORF	ENST00000417775.5_1_1:75198678-75198738:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.14898681640625	2	404.149266	806.283979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.132	1	40.221	39.721	40.721	0.088562								0	0	0	0.38822	1	7207	7207		0.79363	0	1				1135	6435	725	734	1702	1702					-0.12691150079956515
CGSSKYHL	8	Unmodified	_CGSSKYHL_					0	0	0		ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENST00000471538.1_1_1:16200459-16203174:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	447.7110900878906	2	447.710545	893.406537	0.32936	0.00014746	0.4199	0.00018799	0.74927	0.00033545	447.71067066639847	58.199	0.21786	58.199	57.999	58.217	0					18	7	3	0	0	0	0.43379	1	12805	12805		21.747	3.6117	1	467320			1136	6672	726	735	1703	1703					-0.044429900768932384
CGSSKYHL	8	Unmodified	_CGSSKYHL_					0	0	0		ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENST00000471538.1_1_1:16200459-16203174:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	447.7108459472656	2	447.710545	893.406537	0.17588	7.8744E-05	0.6822	0.00030543	0.85808	0.00038417	447.71076974729937	58.361	0.45158	58.361	58.256	58.708	0					39	16	3	0	0	0	0.43379	1	12854	12854		21.747	3.6117	1	329100			1137	6672	726	735	1704	1704					-0.044429900768932384
CGSSKYHL	8	Unmodified	_CGSSKYHL_					0	0	0		ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENST00000471538.1_1_1:16200459-16203174:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	447.7108459472656	2	447.710545	893.406537	0.1217	5.4487E-05	0.73219	0.00032781	0.85389	0.0003823	447.7108075916821	58.211	0.88773	58.281	57.943	58.83	0.070477					58	31	3	0	0	0	0.37883	2	12679	12627;12679		28.487	5.3384	1	518220			1138	6672	726	735	1705;1706	1706					-0.044429900768932384
CHAQLTGFPTD	11	Unmodified	_CHAQLTGFPTD_					0	0	0			REV__ENST00000586299.1_1_17:76674036-76674234:-|nuORF	REV__ENST00000586299.1_1_17:76674036-76674234:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.271240234375	2	595.268955	1188.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.578	1	96.578	96.078	97.078	0								0	0	0	0.32709	1	24507	24507		5.2969	0.96765	1		+		1139	12562	727	736	1707	1707					-0.06336296647782547
CHASTTGF	8	Unmodified	_CHASTTGF_					0	0	0			REV__chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63	REV__chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.1756896972656	2	412.173795	822.333038	0.66182	0.00027279	3.295	0.0013581	3.9569	0.0016309	412.1755355967205	87.78	1.7918	87.78	87.402	89.194	0					173	69	5	0	0	0	0.53771	3	21804	21804;21899;21947		2.8892	2.0956	1	11374000	+		1140	7800	728	737	1708;1709;1710	1708					-0.08523538519352769
CHASTTGF	8	Unmodified	_CHASTTGF_					0	0	0			REV__chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63	REV__chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	412.173795	822.333038	0.66182	0.00027279	3.295	0.0013581	3.9569	0.0016309	412.1755355967205	87.78	1.7918	87.78	87.402	89.194	0	0.01037	-0.00026269	NaN	2.8892	173	69	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11374000	+		1141	7800	728	737							-0.08523538519352769
CHCLTDFALE	10	Unmodified	_CHCLTDFALE_					0	0	0		ENST00000482831.1_1_2:230450587-230451634:-|nuORF	ENST00000482831.1_1_2:230450587-230451634:-|nuORF	ENST00000482831.1_1_2:230450587-230451634:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8418579101562	2	576.246634	1150.47872	0.62844	0.00036213	-0.038942	-2.244E-05	0.58949	0.00033969	576.747248302213	85.191	0.18385	85.191	85.07	85.254	0					7	5	2	0	0	0	0.31747	1	21033	21033		5.7319	2.1354	1	60664			1142	6762	729	738	1711	1711					-0.09050443785486095
CHDYAFVK	8	Unmodified	_CHDYAFVK_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7268981933594	2	491.726195	981.437837	-0.12861	-6.3241E-05	2.3748	0.0011678	2.2462	0.0011045	491.72725090977826	27.998	0.35641	28.08	27.876	28.232	0.082134					33	21	2	0	0	0	0.53817	1	3612	3612		2.5775	0.51773	1	29077	+		1143	10875	730	739	1712	1712					-0.05362417042783818
CHGLMMLLL	9	Unmodified	_CHGLMMLLL_					0	0	0		ENST00000395246.5_1_5:130728068-130728134:+|nuORF	ENST00000395246.5_1_5:130728068-130728134:+|nuORF	ENST00000395246.5_1_5:130728068-130728134:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7671508789062	2	515.765951	1029.51735	0.57586	0.00029701	2.2911	0.0011816	2.8669	0.0014787	515.7669391921661	88.067	0.60863	88.067	87.708	88.317	0					33	21	2	0	0	0	0.23437	2	21886	21886;21945		14.582	1.0738	1	137900			1144	6333	731	740	1713;1714	1713					0.00377190315361986
CHGLMMLLL	9	Unmodified	_CHGLMMLLL_					0	0	0		ENST00000395246.5_1_5:130728068-130728134:+|nuORF	ENST00000395246.5_1_5:130728068-130728134:+|nuORF	ENST00000395246.5_1_5:130728068-130728134:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7679443359375	2	515.765951	1029.51735	0.34197	0.00017637	2.7374	0.0014119	3.0794	0.0015882	515.7672508715891	87.98	0.6172	88.01	87.686	88.303	0.030037					33	21	2	0	0	0	0.23437	2	21700	21700;21751		14.582	1.0738	1	188610			1145	6333	731	740	1715;1716	1715					0.00377190315361986
CHLKWAPL	8	Unmodified	_CHLKWAPL_					0	0	0			REV__ENST00000578847.5_1_17:73083883-73089702:+|nuORF	REV__ENST00000578847.5_1_17:73083883-73089702:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.57672119140625	2	484.262748	966.510943	0.22323	0.0001081	2.4416	0.0011824	2.6649	0.0012905	484.26398194145924	47.511	0.49749	47.594	47.376	47.874	0.083096					33	19	3	0	0	0	0.3576	1	9372	9372		5.2307	0	1	107070	+		1146	12544	732	741	1717	1717					0.02634756470490629
CHPSRGPF	8	Unmodified	_CHPSRGPF_					0	0	0		nc|ENSG00000119283|Q6ZTA4-2|TRIM67;ENSG00000119283|ENST00000366653|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.71087646484375	2	450.710879	899.407206	0.55882	0.00025187	-1.1094	-0.00050004	-0.55063	-0.00024818	450.71029797129256	85.312	0.74237	85.336	84.919	85.661	0.023132					42	29	2	0	0	0	0.53423	1	20930	20930		5.2307	0.47466	1	82483			1147	2060	733	742	1718	1718					-0.04652150637173236
CICPVNKSL	9	Unmodified	_CICPVNKSL_					0	0	0			REV__ENST00000560936.2_1_15:60688058-60688154:-|nuORF	REV__ENST00000560936.2_1_15:60688058-60688154:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7528991699219	2	488.751356	975.488158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.18	1	102.22	101.72	102.72	0.042656								0	0	0	0.26267	1	26046	26046		6.7232	0.36906	1		+		1148	12482	734	743	1719	1719					-0.0005663070928676461
CIFFHLYL	8	Unmodified	_CIFFHLYL_					0	0	0		ENST00000589314.1_1_18:55268886-55269748:-|nuORF	ENST00000589314.1_1_18:55268886-55269748:-|nuORF	ENST00000589314.1_1_18:55268886-55269748:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7463989257812	2	528.272781	1054.53101	0.67327	0.00035567	2.264	0.001196	2.9373	0.0015517	528.273938182423	80.548	0.44238	80.572	80.299	80.741	0.023605					22	15	2	0	0	0	0.3576	1	19511	19511		6.3541	0	1	157600			1149	7257	735	744	1720	1720					0.005925074104425221
CIFFHLYL	8	Unmodified	_CIFFHLYL_					0	0	0		ENST00000589314.1_1_18:55268886-55269748:-|nuORF	ENST00000589314.1_1_18:55268886-55269748:-|nuORF	ENST00000589314.1_1_18:55268886-55269748:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	528.272781	1054.53101	0.81724	0.00043173	2.2825	0.0012058	3.0998	0.0016375	528.2738486339084	80.559	0.33263	80.559	80.341	80.674	0	-0.0064521	1.0755E-05	NaN	17.087	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77062			1150	7257	735	744							0.005925074104425221
CIHVPRIW	8	Unmodified	_CIHVPRIW_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2824096679688	2	512.281472	1022.54839	0.59451	0.00030456	0.15729	8.0576E-05	0.7518	0.00038513	512.2816151420703	80.889	2.1808	80.912	80.219	82.4	0.023613					122	78	3	0	0	0	0.53771	1	19422	19422		2.8892	2.8892	1	446890			1151	4038	736	745	1721	1721					0.038018477361106306
CIPKLKLLWP	10	Unmodified	_CIPKLKLLWP_					0	0	0		ENST00000396451.4_1_12:10531279-10532321:-|nuORF	ENST00000396451.4_1_12:10531279-10532321:-|nuORF	ENST00000396451.4_1_12:10531279-10532321:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8728637695312	2	605.872662	1209.73077	0.72164	0.00043722	-1.3107	-0.00079412	-0.58907	-0.0003569	605.8718538020954	94.117	0.65237	94.117	93.914	94.566	0					65	34	3	0	0	0	0.47288	1	23721	23721		0.45834	0	1	359110			1152	6343	737	746	1722	1722					0.13429562358192015
CIQIWPSSLIK	11	Unmodified	_CIQIWPSSLIK_					0	0	0			REV__ENSG00000138109|ENST00000260682|CYP2C9	REV__ENSG00000138109|ENST00000260682|CYP2C9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.8622436523438	2	644.360116	1286.70568	0.31655	0.00020397	0.24156	0.00015565	0.55811	0.00035962	644.3600234725468	91.27	0.98215	91.27	90.602	91.584	0					77	35	3	0	0	0	0.39569	1	22840	22840		5.2969	5.2969	1	503460	+		1153	9303	738	747	1723	1723					0.07379462764970413
CIRFLFWF	8	Unmodified	_CIRFLFWF_					0	0	0		ENSG00000114200|ENST00000264381|BCHE	ENSG00000114200|ENST00000264381|BCHE	ENSG00000114200|ENST00000264381|BCHE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2930908203125	2	566.294048	1130.57354	-0.11355	-6.43E-05	-1.0724	-0.00060731	-1.186	-0.00067161	566.2933651922992	31.897	0.2599	31.97	31.792	32.052	0.073782					16	10	2	0	0	0	0.54097	1	4727	4727		0.69038	0	1	29405			1154	1830	739	748	1724	1724					0.013479025386914145
CITSPFRWTF	10	Unmodified	_CITSPFRWTF_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.3056030273438	2	629.307884	1256.60121	0.13629	8.5768E-05	-1.955	-0.0012303	-1.8187	-0.0011445	629.3058222343678	77.672	0.9451	77.672	77.478	78.423	0					115	32	5	0	0	0	0.06541	4	18754	18726;18754;18803;18848		53.404	28.017	1	2793500	+		1155	8209	740	749	1725;1726;1727;1728	1726					-0.01682238991770646
CITSPFRWTF	10	Unmodified	_CITSPFRWTF_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.305908203125	2	629.307884	1256.60121	0.45159	0.00028419	-2.3731	-0.0014934	-1.9215	-0.0012092	629.3056435598432	77.654	1.0133	77.689	77.442	78.456	0.034477					118	34	5	0	0	0	0.06541	4	18575	18575;18620;18681;18729		53.404	24.991	1	2674300	+		1156	8209	740	749	1729;1730;1731;1732	1729					-0.01682238991770646
CIYTFCICQF	10	Unmodified	_CIYTFCICQF_					0	0	0			REV__ENST00000467114.2_1_2:153535806-153549567:-|nuORF	REV__ENST00000467114.2_1_2:153535806-153549567:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.7636108398438	2	620.763606	1239.51266	-0.32768	-0.00020341	0.14171	8.7971E-05	-0.18596	-0.00011544	620.7638098206764	59.098	1.0612	59.098	58.595	59.656	0					73	35	3	0	0	0	0.38104	1	13126	13126		13.906	3.8321	1	432920	+		1157	12005	741	750	1733	1733					-0.09751738618115269
CKKQHQFL	8	Unmodified	_CKKQHQFL_					0	0	0			REV__ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant	REV__ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2756958007812	2	516.276386	1030.53822	0.064408	3.3252E-05	-1.1126	-0.00057442	-1.0482	-0.00054117	516.2756371004511	72.82	0.44447	72.82	72.582	73.027	0					28	15	2	0	0	0	0.49441	1	17246	17246		13.508	0.46542	1	163840	+		1158	8776	742	751	1734	1734					0.024172400108682268
CKKQHQFL	8	Unmodified	_CKKQHQFL_					0	0	0			REV__ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant	REV__ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	516.276386	1030.53822	0.16879	8.7141E-05	-1.8126	-0.0009358	-1.6438	-0.00084866	516.275300880165	72.801	0.57817	72.853	72.458	73.036	0.052574	0.016773	-0.00041959	NaN	13.508	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113430	+		1159	8776	742	751							0.024172400108682268
CKKYYVFL	8	Unmodified	_CKKYYVFL_					0	0	0			REV__ENST00000572607.1_1_17:454958-465900:-|nuORF	REV__ENST00000572607.1_1_17:454958-465900:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2718505859375	2	532.285889	1062.55722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.428	1	75.428	74.928	75.928	0								0	0	0	0.38796	1	18064	18064		14.582	2.0501	1		+		1160	9389	743	752	1735	1735					0.028447765819237247
CKKYYVFL	8	Unmodified	_CKKYYVFL_					0	0	0			REV__ENST00000572607.1_1_17:454958-465900:-|nuORF	REV__ENST00000572607.1_1_17:454958-465900:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2716674804688	2	532.285889	1062.55722	0.51534	0.00027431	1.0544	0.00056126	1.5698	0.00083557	532.2863092289907	74.941	0.62857	74.985	74.812	75.44	0.044037					37	22	3	0	0	0	0.48651	1	17887	17887		14.582	2.0501	1	765250	+		1161	9389	743	752	1736	1736					0.028447765819237247
CKQWTELL	8	Unmodified	_CKQWTELL_					0	0	0			REV__ENST00000508037.1_1_5:111788403-111788643:-|nuORF	REV__ENST00000508037.1_1_5:111788403-111788643:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.281982421875	2	510.762778	1019.511	0.44905	0.00022936	4.351	0.0022224	4.8001	0.0024517	510.76584146539926	77.98	0.29362	78.014	77.822	78.116	0.034485					10	9	2	0	0	0	0.35759	1	18648	18648		9.3474	0	1	53733	+		1162	12238	744	753	1737	1737					0.002027116798217321
CKRCMEPSNE	10	Unmodified	_CKRCMEPSNE_					0	0	0			REV__ENSG00000173535|ENST00000356864|TNFRSF10C	REV__ENSG00000173535|ENST00000356864|TNFRSF10C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2470703125	2	598.746476	1195.4784	0.52288	0.00031308	-1.6416	-0.0009829	-1.1187	-0.00066982	598.7451285803551	70.489	0.37415	70.489	70.243	70.618	0					37	13	4	0	0	0	0.44496	1	16527	16527		5.7319	0.97584	1	356680	+		1163	10322	745	754	1738	1738					-0.1115218677696248
CKRCMEPSNE	10	Unmodified	_CKRCMEPSNE_					0	0	0			REV__ENSG00000173535|ENST00000356864|TNFRSF10C	REV__ENSG00000173535|ENST00000356864|TNFRSF10C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2470703125	2	598.746476	1195.4784	0.52288	0.00031308	-1.6416	-0.0009829	-1.1187	-0.00066982	598.7451285803551	70.489	0.37415	70.489	70.243	70.618	0					37	13	4	0	0	0	0.31747	1	16527	16527		5.7319	0.97584	1	356680	+		1164	10322	745	754	1739	1739					-0.1115218677696248
CKVEFGLDS	9	Unmodified	_CKVEFGLDS_					0	0	0			REV__ENSG00000138794|ENST00000265164|CASP6	REV__ENSG00000138794|ENST00000265164|CASP6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.771728515625	2	499.236593	996.458632	0.48002	0.00023964	-3.8424	-0.0019183	-3.3624	-0.0016786	499.2344832885005	47.396	0.18564	47.479	47.348	47.534	0.083096					10	6	2	0	0	0	0.24791	1	9377	9377		10.074	0.6908	1	32410	+		1165	9328	746	755	1740	1740					-0.0397387145378616
CKYREDYF	8	Unmodified	_CKYREDYF_					0	0	0		ENST00000573441.1_1_17:79096339-79098810:-|nuORF;nc|ENSG00000181409|Q6ZMQ8-3|AATK;ENSG00000181409|ENST00000326724|AATK	ENST00000573441.1_1_17:79096339-79098810:-|nuORF	ENST00000573441.1_1_17:79096339-79098810:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7688598632812	2	562.247492	1122.48043	0.44547	0.00025046	0.063028	3.5437E-05	0.5085	0.0002859	562.247340700275	91.962	0.48058	91.998	91.774	92.254	0.03653					33	16	3	0	0	0	0.51887	1	23012	23012		10.183	0	1	184890			1166	4836	747	756	1741	1741					-0.07591066705231242
CLAVPHVLLW	10	Unmodified	_CLAVPHVLLW_					0	0	0			REV__ENST00000393585.6_1_4:185550570-185552947:-|nuORF	REV__ENST00000393585.6_1_4:185550570-185552947:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7930908203125	2	575.825712	1149.63687	0.26705	0.00015378	0.3725	0.0002145	0.63955	0.00036827	576.3271059607166	78.322	0.47359	78.322	78.125	78.599	0					27	15	3	0	0	0	0.31512	1	18983	18983		12.532	0.89125	1	179650	+		1167	11703	748	757	1742	1742					0.06803843255920583
CLCGKFVL	8	Unmodified	_CLCGKFVL_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.7316589355469	2	441.732435	881.450316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.464	1	73.516	73.016	74.016	0.052574								0	0	0	0.38822	1	17309	17309		9.3474	0	1				1168	2563	749	758	1743	1743					0.004849030958894218
CLCPAATRL	9	Unmodified	_CLCPAATRL_					0	0	0		SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|20|2|sense	SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|20|2|sense	SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|20|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2430419921875	2	474.243698	946.472843	-0.4022	-0.00019074	-0.31759	-0.00015062	-0.71979	-0.00034136	474.24340926313914	28.421	0.74574	28.503	28.304	29.05	0.082134					86	46	4	0	0	0	0.24767	1	3676	3676		13.042	0	1	233820			1169	13407	750	759	1744	1744					-0.0025349750650320857
CLEIKVQF	8	Unmodified	_CLEIKVQF_					0	0	0		ENST00000588967.1_1_19:44332352-44339713:+|nuORF	ENST00000588967.1_1_19:44332352-44339713:+|nuORF	ENST00000588967.1_1_19:44332352-44339713:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2685241699219	2	490.267696	978.520839	0.25939	0.00012717	1.3396	0.00065676	1.599	0.00078393	490.26847266756744	79.403	1.1793	79.429	79.071	80.251	0.026436					67	41	2	0	0	0	0.53345	1	19296	19296		5.7604	0.52976	1	215170			1170	7253	751	760	1745	1745					0.030718996852101554
CLEMNESYVAI	11	Unmodified	_CLEMNESYVAI_					0	0	0			REV__PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant	REV__PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.2859497070312	2	636.285956	1270.55736	-0.11564	-7.3582E-05	0.57556	0.00036622	0.45992	0.00029264	636.2863438990443	72.584	0.65445	72.584	72.348	73.002	0					48	22	3	0	0	0	0.40055	1	17171	17171		4.1895	0.59301	1	273610	+		1171	8581	752	761	1746	1746					-0.06709636271034469
CLEMNESYVAI	11	Unmodified	_CLEMNESYVAI_					0	0	0			REV__PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant	REV__PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.2860717773438	2	636.285956	1270.55736	0.099369	6.3227E-05	0.60083	0.0003823	0.7002	0.00044553	636.2863308058371	72.499	0.63386	72.555	72.321	72.954	0.055939					51	21	3	0	0	0	0.38984	2	17045	17045;17103		6.6304	3.0339	1	297170	+		1172	8581	752	761	1747;1748	1747					-0.06709636271034469
CLFAQYCRS	9	Unmodified	_CLFAQYCRS_					0	0	0			REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7439575195312	2	545.744062	1089.47357	-0.089351	-4.8763E-05	-0.44966	-0.0002454	-0.53901	-0.00029416	545.7439628819862	32.798	0.18668	32.798	32.718	32.905	0					10	7	2	0	0	0	0.33978	1	5139	5139		1.4819	0.28856	1	12701	+		1173	9917	753	762	1749	1749					-0.06758702857450771
CLFCIFLVF	9	Unmodified	_CLFCIFLVF_					0	0	0			REV__ENST00000271332.3_1_1:109817672-109818002:+|nuORF	REV__ENST00000271332.3_1_1:109817672-109818002:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3328247070312	2	552.784667	1103.55478	0.36785	0.00020334	4.3853	0.0024241	4.7532	0.0026275	553.7921724326526	91.177	1.5723	91.213	90.828	92.401	0.035446					118	55	4	0	0	0	0.12341	1	22652	22652		36.466	13.73	1	547040	+		1174	11272	754	763	1750	1750					0.007146048526010418
CLFESFWCRY	10	Unmodified	_CLFESFWCRY_					0	0	0			REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF	REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.8634948730469	3	451.863343	1352.5682	0.48543	0.00021935	-0.5658	-0.00025567	-0.08037	-3.6316E-05	451.8629399207493	68.042	0.15642	68.042	67.914	68.07	0					9	5	3	0	0	0	0.47119	1	15778	15778		0.77653	0	1	35468	+		1175	11504	755	764	1751	1751					-0.09398189106104837
CLFISIACKS	10	Unmodified	_CLFISIACKS_					0	0	0			REV__nc|ENSG00000172340|Q96I99-2|SUCLG2	REV__nc|ENSG00000172340|Q96I99-2|SUCLG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7786865234375	2	542.780113	1083.54567	0.25368	0.00013769	-0.94934	-0.00051528	-0.69566	-0.00037759	542.7793760382298	17.891	0.16188	17.975	17.914	18.076	0.083694					32	19	2	0	0	0	0.44496	1	952	952		5.7319	0.83484	1	18880	+		1176	12844	756	765	1752	1752					0.007242114962537016
CLFLWQGLE	9	Unmodified	_CLFLWQGLE_					0	0	0			REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF	REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7775268554688	2	554.778428	1107.5423	-0.20371	-0.00011301	-0.11055	-6.133E-05	-0.31426	-0.00017434	554.7782646413035	18.34	0.57226	18.34	18.163	18.735	0					195	66	4	0	0	0	0.33704	1	1070	1070		1.8442	0	1	330720	+		1177	12637	757	766	1753	1753					-0.007167152861029535
CLGSVGRGLCL	11	Unmodified	_CLGSVGRGLCL_					0	0	0		ENST00000567589.1_1_16:720997-721204:+|nuORF;ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF	ENST00000567589.1_1_16:720997-721204:+|nuORF	ENST00000567589.1_1_16:720997-721204:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2720336914062	2	539.280812	1076.54707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.373	1	57.373	56.873	57.873	0								0	0	0	0.23525	1	12562	12562		22.736	0	1				1178	7182	758	767	1754	1754					0.01185845585041534
CLHCHYPK	8	Unmodified	_CLHCHYPK_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7293395996094	2	500.728215	999.441877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.91	1	26.91	26.41	27.41	0								0	0	0	0.38822	1	3395	3395		0.79363	0	1		+		1179	8790	759	768	1755	1755					-0.05786650820732575
CLHTFCERCL	10	Unmodified	_CLHTFCERCL_					0	0	0		nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000110171|ENST00000345851|TRIM3;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000110171|O75382-3|TRIM3	nc|ENSG00000110171|O75382-3|TRIM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5141296386719	3	408.848928	1223.52495	0.56369	0.00023046	-0.97397	-0.00039821	-0.41028	-0.00016774	408.84815583065046	76.067	0.040024	76.067	76.041	76.081	0					4	2	2	0	0	0	0.31803	1	18265	18265		1.5923	0	1	444340			1180	1637	760	769	1756	1756					-0.07786702155021885
CLICWDLLSL	10	Unmodified	_CLICWDLLSL_					0	0	0		ENST00000309982.9_2_8:104240418-104240520:+|nuORF	ENST00000309982.9_2_8:104240418-104240520:+|nuORF	ENST00000309982.9_2_8:104240418-104240520:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.318359375	2	589.801045	1177.58754	0.38806	0.00022888	-0.69973	-0.0004127	-0.31167	-0.00018382	589.8007990100402	78.014	0.55412	78.014	77.807	78.361	0					30	18	3	0	0	0	0.31643	1	18876	18876		9.3831	0	1	132870			1181	5996	761	770	1757	1757					0.005847671847959646
CLIMFYFIAL	10	Unmodified	_CLIMFYFIAL_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.3280639648438	2	617.324156	1232.63376	-0.13434	-8.2934E-05	4.1683	0.0025732	4.0339	0.0024902	617.3263974778888	55.977	0.56792	56.043	55.575	56.143	0.065872					30	20	2	0	0	0	0.43343	1	11956	11956		7.9102	1.7044	1	221670			1182	4400	762	771	1758	1758					0.026748320869046438
CLIMMENL	8	Unmodified	_CLIMMENL_					0	0	0		ENST00000525819.1_1_4:102117192-102268666:-|nuORF	ENST00000525819.1_1_4:102117192-102268666:-|nuORF	ENST00000525819.1_1_4:102117192-102268666:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.716064453125	2	483.726492	965.438431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.082	1	68.146	67.646	68.646	0.063507								0	0	0	0.38822	1	15669	15669		5.7604	0.52976	1				1183	6986	763	772	1759	1759					-0.04567081709615195
CLKYMMFLF	9	Unmodified	_CLKYMMFLF_					0	0	0		ENSG00000011105|ENST00000011898|TSPAN9	ENSG00000011105|ENST00000011898|TSPAN9	ENSG00000011105|ENST00000011898|TSPAN9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7888793945312	2	598.289259	1194.56397	0.48433	0.00028977	2.951	0.0017655	3.4353	0.0020553	598.2904196326525	93.743	1.1858	93.743	92.793	93.979	0					90	45	2	0	0	0	0.25979	1	23472	23472		11.64	0.81637	1	2022900			1184	422	764	773	1760	1760					-0.025533698533763527
CLLFLLPRF	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LLFLLPRF_	C(1)LLFLLPRF		C(42)LLFLLPRF		0	1	0		ENST00000568975.5_1_16:68386292-68391124:+|nuORF	ENST00000568975.5_1_16:68386292-68391124:+|nuORF	ENST00000568975.5_1_16:68386292-68391124:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.83935546875	2	589.841362	1177.66817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.245	1	84.267	83.767	84.767	0.021744								0	0	0	0.071558	1	20595	20595		42.095	9.9776	1				1185	7188	765	774	1761	1761	13				0.08644416290007939
CLLMQIMLF	9	Unmodified	_CLLMQIMLF_					0	0	0			REV__PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant	REV__PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2890625	2	556.289259	1110.56397	0.70435	0.00039182	-1.4072	-0.00078284	-0.7029	-0.00039102	556.2885041468255	82.49	0.75426	82.49	82.118	82.872	0					44	26	2	0	0	0	0.28587	1	20255	20255		8.5933	1.304	1	107830	+		1186	12965	766	775	1762	1762					0.013106301466223158
CLLPEDMLLT	10	Unmodified	_CLLPEDMLLT_					0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2910766601562	2	574.290511	1146.56647	0.16034	9.2081E-05	0.37754	0.00021682	0.53788	0.0003089	574.2910473762183	35.506	4.4992	35.585	35.279	39.778	0.078827					435	173	5	0	0	0	0.45794	1	6731	6731		3.2813	0.99853	1	7724500	+		1187	10397	767	776	1763	1763					-0.0009524291474463098
CLLPEDMLLT	10	Unmodified	_CLLPEDMLLT_					0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2919311523438	2	574.290511	1146.56647	-0.05733	-3.2924E-05	1.1461	0.00065818	1.0888	0.00062526	574.7925307123029	39.896	1.278	39.985	39.788	41.066	0.088562					67	49	2	0	0	0	0.44496	1	7141	7141		5.7319	1.203	1	39888	+		1188	10397	767	776	1764	1764					-0.0009524291474463098
CLLSPWQGSW	10	Unmodified	_CLLSPWQGSW_					0	0	0			REV__ENST00000264039.6_1_2:241407346-241407475:+|nuORF	REV__ENST00000264039.6_1_2:241407346-241407475:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7695922851562	2	588.778959	1175.54336	0.68657	0.00040424	4.1005	0.0024143	4.7871	0.0028185	588.7817449320659	55.37	0.40621	55.435	55.268	55.674	0.065128					25	15	2	0	0	0	0.22666	1	11884	11884		30.637	8.8899	1	214450	+		1189	11249	768	777	1765	1765					-0.03738500917165766
CLLSTLQFV	9	Unmodified	_CLLSTLQFV_					0	0	0		ENST00000468090.5_1_21:45180432-45180885:+|nuORF	ENST00000468090.5_1_21:45180432-45180885:+|nuORF	ENST00000468090.5_1_21:45180432-45180885:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2817993164062	2	512.280803	1022.54705	0.82108	0.00042062	1.3227	0.00067759	2.1438	0.0010982	512.2814870615176	80.685	2.1156	80.685	80.197	82.313	0					119	73	3	0	0	0	0.29576	3	19615	19615;19720;19774		7.2892	0	1	177440			1190	6652	769	778	1766;1767;1768	1766					0.03668168856700049
CLLVYLLTF	9	Unmodified	_CLLVYLLTF_					0	0	0		SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense	SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense	SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7913208007812	2	542.809196	1083.60384	0.37394	0.00020298	-2.0478	-0.0011116	-1.6739	-0.0009086	542.8077071430511	82.7	0.82994	82.722	82.27	83.1	0.021751					41	29	2	0	0	0	0.24749	1	19999	19999		9.3474	0	1	192670			1191	13419	770	779	1769	1769					0.06538216413173359
CLPFPFHP	8	Unmodified	_CLPFPFHP_					0	0	0		ENST00000412716.7_1_12:51636673-51636739:+|nuORF	ENST00000412716.7_1_12:51636673-51636739:+|nuORF	ENST00000412716.7_1_12:51636673-51636739:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.23468017578125	2	479.236199	956.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.319	1	25.415	24.915	25.915	0.096073								0	0	0	0.38822	1	2811	2811		0.79363	0	1				1192	6407	771	780	1770	1770					-0.022126213121737237
CLPSPGEVGL	10	Unmodified	_CLPSPGEVGL_					0	0	0			REV__ENST00000570950.1_1_16:2906057-2907066:-|nuORF	REV__ENST00000570950.1_1_16:2906057-2907066:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2475280761719	2	486.24696	970.479368	0.18721	9.1029E-05	0.031101	1.5123E-05	0.21831	0.00010615	486.2469073772172	68.381	1.3436	68.381	67.669	69.012	0					88	50	3	0	0	0	0.41688	1	15776	15776		10.074	0	1	132610	+		1193	12520	772	781	1771	1771					-0.007052810741015492
CLPSSLPPLTP	11	Unmodified	_CLPSSLPPLTP_					0	0	0			REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.287841796875	2	562.804642	1123.59473	0.3257	0.00018331	-0.74775	-0.00042084	-0.42205	-0.00023753	562.8041476024811	37.234	1.2329	37.318	36.637	37.87	0.084476					67	45	2	0	0	0	0.31095	1	6475	6475		1.1933	0.59184	1	44624	+		1194	7921	773	782	1772	1772					0.03787823056882189
CLPWFWWML	9	Unmodified	_CLPWFWWML_					0	0	0			REV__nc|ENSG00000163297|P58335-2|ANTXR2	REV__nc|ENSG00000163297|P58335-2|ANTXR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3031005859375	2	641.301016	1280.58748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.854	1	18.854	18.354	19.354	0								0	0	0	0.29233	1	1221	1221		0.6015	0.14316	1		+		1195	9933	774	783	1773	1773					-0.04159188024550531
CLQSEAVLQRG	11	Unmodified	_CLQSEAVLQRG_					0	0	0		ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8782043457031	3	401.876529	1202.60776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.649	1	27.731	27.231	28.231	0.082134								0	0	0	0.33436	1	3479	3479		1.1098	0.26481	1				1196	3514	775	784	1774	1774					0.014556541689444202
CLRRLVPPGLW	11	Unmodified	_CLRRLVPPGLW_					0	0	0		nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT	nc|ENSG00000164362|O14746-4|TERT	nc|ENSG00000164362|O14746-4|TERT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5915832519531	3	437.256904	1308.74888	0.50799	0.00022212	0.60311	0.00026371	1.1111	0.00048583	437.2571721032109	91.052	1.5415	91.052	90.495	92.037	0					125	56	3	0	0	0	0.41254	1	22801	22801		1.4551	1.4551	1	367590			1197	4006	776	785	1775	1775					0.10685697332928612
CLRSLLQLP	9	Unmodified	_CLRSLLQLP_					0	0	0			REV__nc|ENSG00000076248|P13051-2|UNG	REV__nc|ENSG00000076248|P13051-2|UNG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7946166992188	2	521.807519	1041.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.631	1	92.631	92.131	93.131	0								0	0	0	0.25573	1	23304	23304		8.1555	0.8663	1		+		1198	12754	777	786	1776	1776					0.08134966359216378
CLSLQQDGPVS	11	Unmodified	_CLSLQQDGPVS_					0	0	0			REV__ENST00000475086.5_1_9:4661905-4666534:-|nuORF	REV__ENST00000475086.5_1_9:4661905-4666534:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7781372070312	2	573.776613	1145.53867	0.3578	0.0002053	1.3181	0.00075631	1.6759	0.00096161	573.7777332085888	100.91	0.44938	100.91	100.76	101.21	0					39	25	2	0	0	0	0.40891	1	25871	25871		2.2828	0.22302	1	87849	+		1199	12048	778	787	1777	1777					-0.028274298505948536
CLSLSSHLSW	10	Unmodified	_CLSLSSHLSW_					0	0	0			REV__ENST00000403496.6_1_1:32705729-32705810:-|nuORF	REV__ENST00000403496.6_1_1:32705729-32705810:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.27880859375	2	566.776416	1131.53828	0.43907	0.00024885	0.74261	0.0004209	1.1817	0.00066975	567.2788725034824	67.803	1.407	67.866	67.469	68.876	0.063507					72	51	2	0	0	0	0.38104	1	15559	15559		13.906	1.6654	1	1075800	+		1200	11759	779	788	1778	1778					-0.022228047797852923
CLSLTVLGFA	10	Unmodified	_CLSLTVLGFA_					0	0	0			REV__ENSG00000111850|ENST00000392863|SMIM8	REV__ENSG00000111850|ENST00000392863|SMIM8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.281982421875	2	512.280803	1022.54705	0.82108	0.00042062	1.3227	0.00067759	2.1438	0.0010982	512.2814870615176	80.685	2.1156	80.685	80.197	82.313	0					119	73	3	0	0	0	0.41688	1	19842	19842		10.074	2.7847	1	177440	+		1201	8698	780	789	1779	1779					0.036681688566886805
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7566528320312	2	572.776416	1143.53828	0.25108	0.00014381	-2.391	-0.0013695	-2.1399	-0.0012257	572.7750624543024	56.783	1.1613	56.783	56.328	57.489	0					54	42	2	0	0	0	0.3051	1	12369	12369		17.443	4.4002	1	105230	+		1202	12344	781	790	1780	1780					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3662109375	2	572.776416	1143.53828	0.56645	0.00032445	-2.7542	-0.0015775	-2.1877	-0.0012531	572.7746653634837	54.172	0.44061	54.172	53.931	54.371	0					25	15	2	0	0	0	0.3089	1	11569	11569		17.443	3.5366	1	129030	+		1203	12344	781	790	1781	1781					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.775146484375	2	572.776416	1143.53828	0.51034	0.00029231	-2.8047	-0.0016064	-2.2943	-0.0013141	572.7746822489884	54.121	0.39238	54.186	54.007	54.399	0.065128					30	14	3	0	0	0	0.34492	1	11471	11471		12.873	2.0487	1	147160	+		1204	12344	781	790	1782	1782					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7752685546875	2	572.776416	1143.53828	0.3253	0.00018632	-2.6509	-0.0015184	-2.3256	-0.0013321	572.774999859521	57.66	0.51799	57.728	57.375	57.893	0.068375					36	19	3	0	0	0	0.16959	1	12517	12517		34.932	4.2955	1	195910	+		1205	12344	781	790	1783	1783					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	572.776416	1143.53828	0.25108	0.00014381	-2.391	-0.0013695	-2.1399	-0.0012257	572.7750624543024	56.783	1.1613	56.783	56.328	57.489	0	-0.098169	1.8329E-05	NaN	17.443	54	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105230	+		1206	12344	781	790							-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.776416	1143.53828	0.3594	0.00020585	-2.4741	-0.0014171	-2.1147	-0.0012112	572.7753213565743	56.913	0.66914	56.979	56.683	57.352	0.066452	0.098169	-7.6882E-05	NaN	17.443	29	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98011	+		1207	12344	781	790							-0.027748047797786057
CLVSLCLPHP	10	Unmodified	_CLVSLCLPHP_					0	0	0			REV__ENST00000527372.6_2_17:27400982-27401243:-|nuORF	REV__ENST00000527372.6_2_17:27400982-27401243:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.27978515625	2	541.28028	1080.54601	-0.21172	-0.0001146	-0.29503	-0.00015969	-0.50675	-0.00027429	541.2800857659702	23.142	0.41473	23.142	23.025	23.44	0					73	39	3	0	0	0	0.46746	1	2323	2323		1.4819	0	1	32103	+		1208	12336	782	791	1784	1784					0.008956312161217284
CLWCFFFF	8	Unmodified	_CLWCFFFF_					0	0	0			REV__ENST00000298316.6_1_14:50361063-50361216:+|nuORF	REV__ENST00000298316.6_1_14:50361063-50361216:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3087768554688	2	556.74026	1111.46597	0.53194	0.00029615	0.0091346	5.0856E-06	0.54107	0.00030124	556.7401697292449	82.893	0.82098	82.914	82.678	83.499	0.021744					49	28	3	0	0	0	0.35759	1	20131	20131		11.114	1.767	1	143900	+		1209	11336	783	792	1785	1785					-0.08530810387060228
CLWFFFVF	8	Unmodified	_CLWFFFVF_					0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.771484375	2	554.769874	1107.5252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.303	1	86.328	85.828	86.828	0.025169								0	0	0	0.37709	1	21222	21222		32.454	10.707	1		+		1210	12707	784	793	1786	1786					-0.024265911012207653
CLWFFFVF	8	Unmodified	_CLWFFFVF_					0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7714233398438	2	554.769874	1107.5252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.436	1	86.461	85.961	86.961	0.025169								0	0	0	0.3821	1	21263	21263		24.21	2.4633	1		+		1211	12707	784	793	1787	1787					-0.024265911012207653
CLWFFFVF	8	Unmodified	_CLWFFFVF_					0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7711181640625	2	554.769874	1107.5252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.817	1	86.844	86.344	87.344	0.027573								0	0	0	0.38643	1	21380	21380		17.087	3.5787	1		+		1212	12707	784	793	1788	1788					-0.024265911012207653
CLWPRWRM	8	Unmodified	_CLWPRWRM_					0	0	0		ENST00000459739.5_1_10:79553706-79569486:-|nuORF	ENST00000459739.5_1_10:79553706-79569486:-|nuORF	ENST00000459739.5_1_10:79553706-79569486:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2847290039062	2	574.286231	1146.55791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.042	1	30.118	29.618	30.618	0.075403								0	0	0	0.38822	1	4187	4187		0.79363	0.19213	1				1213	6597	785	794	1789	1789					-0.009507072500355207
CLYDALERQ	9	Unmodified	_CLYDALERQ_					0	0	0			REV__nc|ENSG00000203485|Q27J81-2|INF2	REV__nc|ENSG00000203485|Q27J81-2|INF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2890625	2	555.766049	1109.51754	0.77429	0.00043033	-2.1929	-0.0012187	-1.4186	-0.00078842	555.7646205215074	82.164	0.75455	82.164	81.87	82.625	0					37	26	2	0	0	0	0.24929	1	20255	20255		9.3831	2.66	1	123850	+		1214	10930	786	795	1790	1790					-0.032833951594511745
CLYFLLPSP	9	Unmodified	_CLYFLLPSP_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.778076171875	2	526.777896	1051.54124	-0.23794	-0.00012534	0.061463	3.2378E-05	-0.17648	-9.2965E-05	526.7779557688996	24.758	2.2137	24.758	23.461	25.675	0					347	186	2	0	0	0	0.34646	1	2503	2503		0.6015	0.6015	1	49592	+		1215	9128	787	796	1791	1791					0.017530703450347573
CMFPDIYLF	9	Unmodified	_CMFPDIYLF_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|166|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|166|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|166|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7613525390625	2	574.761389	1147.50822	-0.2529	-0.00014536	-0.065056	-3.7392E-05	-0.31795	-0.00018275	574.7613273643636	23.368	1.0929	23.368	23.15	24.243	0					197	102	4	0	0	0	0.34646	1	2516	2516		0.6015	0	1	121550			1216	7403	788	797	1792	1792					-0.05962879769367646
CMLMLRQK	8	Unmodified	_CMLMLRQK_					0	0	0			REV__ENST00000392011.6_1_2:235963415-235963535:+|nuORF	REV__ENST00000392011.6_1_2:235963415-235963535:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7686462402344	2	511.769025	1021.5235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.162	1	24.261	23.761	24.761	0.099739								0	0	0	0.38822	1	2484	2484		0.79363	0	1		+		1217	11689	789	798	1793	1793					0.013597085468518344
CMYDFDLGKF	10	Unmodified	_CMYDFDLGKF_					0	0	0		ENST00000479971.1_1_12:72291642-72301148:+|nuORF	ENST00000479971.1_1_12:72291642-72301148:+|nuORF	ENST00000479971.1_1_12:72291642-72301148:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.7633056640625	2	619.76466	1237.51477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.1	1	106.1	105.6	106.6	0								0	0	0	0.33984	1	27348	27348		0.40072	0	1				1218	6740	790	799	1794	1794					-0.09448986608640553
CNCSEHIPSTI	11	Unmodified	_CNCSEHIPSTI_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2596435546875	2	602.260273	1202.50599	0.11088	6.6778E-05	0.068871	4.1478E-05	0.17975	0.00010826	602.2602769976752	32.855	0.48126	32.929	32.753	33.234	0.074322					29	20	2	0	0	0	0.40977	1	5008	5008		2.086	0.60411	1	42168			1219	521	791	800	1795	1795					-0.08715960245103815
CNDSNSFHDLD	11	Unmodified	_CNDSNSFHDLD_					0	0	0			REV__ENST00000588984.5_1_19:3751026-3754498:-|nuORF	REV__ENST00000588984.5_1_19:3751026-3754498:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.7373046875	2	633.738216	1265.46188	-0.51833	-0.00032848	-0.41082	-0.00026035	-0.92914	-0.00058883	633.737870919063	42.528	0.23106	42.528	42.423	42.654	0					10	7	2	0	0	0	0.4147	1	8066	8066		0.96228	0.43751	1	32582	+		1220	7976	792	801	1796	1796					-0.16023273137716387
CNLVDQRPQP	10	Unmodified	_CNLVDQRPQP_					0	0	0			REV__ENST00000527069.5_1_11:68312327-68318499:+|nuORF	REV__ENST00000527069.5_1_11:68312327-68318499:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7886962890625	2	585.290222	1168.56589	-0.17067	-9.989E-05	-0.15262	-8.9324E-05	-0.32328	-0.00018921	585.2902877055279	17.055	0.24487	17.055	16.938	17.183	0					48	29	2	0	0	0	0.31838	1	830	830		1.4819	0.28856	1	25018	+		1221	12333	793	802	1797	1797					-0.011649015195644097
CNNDFCRLGCV	11	Unmodified	_CNNDFCRLGCV_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3473510742188	2	622.254468	1242.49438	-0.12828	-7.9824E-05	-1.0301	-0.00064098	-1.1584	-0.00072081	622.2537913000352	90.085	0.41966	90.085	89.908	90.327	0					28	17	2	0	0	0	0.31076	1	22499	22499		3.2813	1.2216	1	659820			1222	4571	794	803	1798	1798					-0.1171648054007619
CNNDQKNYSSF	11	Unmodified	_CNNDQKNYSSF_					0	0	0			REV__ENSG00000197106|ENST00000331565|SLC6A17	REV__ENSG00000197106|ENST00000331565|SLC6A17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.5159606933594	3	440.515548	1318.52481	0.071206	3.1367E-05	0.49339	0.00021735	0.5646	0.00024871	440.51585077108973	33.18	0.5065	33.18	32.985	33.491	0					46	19	3	0	0	0	0.4167	1	5247	5247		0.50596	0.23694	1	60388	+		1223	10842	795	804	1799	1799					-0.12170707349696386
CNPHCPHC	8	Unmodified	_CNPHCPHC_					0	0	0			REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF	REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.6604309082031	2	455.659475	909.304397	0.57926	0.00026394	1.5015	0.00068419	2.0808	0.00094814	455.66004038563733	63.206	0.58919	63.206	62.941	63.531	0					32	22	2	0	0	0	0.54097	2	14259	14259;14399		0.69038	0.69038	1	233080	+		1224	10455	796	805	1800;1801	1800					-0.153883026918038
CNYHLTYT	8	Unmodified	_CNYHLTYT_					0	0	0		ENST00000505615.1_1_5:82849283-82876028:+|nuORF;nc|ENSG00000038427|P13611-4|VCAN;nc|ENSG00000038427|P13611-3|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN	ENST00000505615.1_1_5:82849283-82876028:+|nuORF	ENST00000505615.1_1_5:82849283-82876028:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7044677734375	2	507.72111	1013.42767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.94	1	31.94	31.44	32.44	0								0	0	0	0.38822	1	4873	4873		5.2307	0.90143	1				1225	529	797	806	1802	1802					-0.07851024768035586
CPEELNTRAKK	11	Unmodified	_CPEELNTRAKK_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.8358764648438	2	644.837536	1287.66052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.05	1	101.09	100.59	101.59	0.042839								0	0	0	0.33835	1	25710	25710		1.3295	0	1		+		1226	12853	798	807	1803	1803					0.02819612231769497
CPGWKKAQFI	10	Unmodified	_CPGWKKAQFI_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3126220703125	2	589.312969	1176.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.71	1	103.74	103.24	104.24	0.03791								0	0	0	0.33738	1	26495	26495		3.2813	0	1				1227	4557	799	808	1804	1804					0.030143687334884817
CPMHHQDHKT	10	Unmodified	_CPMHHQDHKT_					0	0	0		nc|ENSG00000158402|P30307-4|CDC25C;nc|ENSG00000158402|P30307-3|CDC25C;nc|ENSG00000158402|P30307-2|CDC25C;ENSG00000158402|ENST00000323760|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.2659301757812	2	617.266224	1232.5179	-0.56068	-0.00034609	-0.4857	-0.00029981	-1.0464	-0.00064589	617.2660104135999	33.407	0.60287	33.407	33.2	33.803	0					51	21	3	0	0	0	0.47345	1	5273	5273		0.35063	0	1	99383			1228	3688	800	809	1805	1805					-0.08906298711258387
CPRDEMDFTS	10	Unmodified	_CPRDEMDFTS_					0	0	0		nc|ENSG00000139865|Q86TZ1-2|TTC6	nc|ENSG00000139865|Q86TZ1-2|TTC6	nc|ENSG00000139865|Q86TZ1-2|TTC6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	400.34991455078125	3	400.826846	1199.45871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.061	1	20.061	19.561	20.561	0								0	0	0	0.33988	1	1506	1506		0.12286	0	1				1229	7511	801	810	1806	1806					-0.13304239516105554
CPSRCHLQLA	10	Unmodified	_CPSRCHLQLA_					0	0	0			REV__ENST00000479288.5_1_7:23145474-23145636:+|nuORF	REV__ENST00000479288.5_1_7:23145474-23145636:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2833251953125	2	564.27606	1126.53757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.366	1	29.366	28.866	29.866	0								0	0	0	0.33984	1	4109	4109		0.40072	0.050084	1		+		1230	12073	802	811	1807	1807					-0.02063922700472176
CPWWLMLPF	9	Unmodified	_CPWWLMLPF_					0	0	0			REV__ENST00000342085.8_1_16:2648895-2649351:+|nuORF	REV__ENST00000342085.8_1_16:2648895-2649351:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7623291015625	2	596.787741	1191.56093	0.27333	0.00016312	-0.71779	-0.00042837	-0.44447	-0.00026525	596.7872795029075	78.047	0.29539	78.08	77.907	78.203	0.03273					14	9	2	0	0	0	0.25809	1	18702	18702		2.3027	0.65011	1	48734	+		1231	11464	803	812	1808	1808					-0.027188769159010917
CPWWLMLPF	9	Unmodified	_CPWWLMLPF_					0	0	0			REV__ENST00000342085.8_1_16:2648895-2649351:+|nuORF	REV__ENST00000342085.8_1_16:2648895-2649351:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	596.787741	1191.56093	0.18121	0.00010815	-1.5604	-0.00093125	-1.3792	-0.0008231	596.7865660754641	77.992	0.27718	77.992	77.899	78.176	0	-0.04386	-0.00079836	NaN	2.3027	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68369	+		1232	11464	803	812							-0.027188769159010917
CQFRSRSTE	9	Unmodified	_CQFRSRSTE_					0	0	0			REV__ENST00000437035.5_1_20:59102446-59102509:+|nuORF	REV__ENST00000437035.5_1_20:59102446-59102509:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2844848632812	2	557.258922	1112.50329	0.64088	0.00035714	3.102	0.0017286	3.7429	0.0020857	557.2577783848413	96.599	0.43414	96.639	96.422	96.857	0.039772					48	22	4	0	0	0	0.25875	1	24384	24384		0.45834	0	1	80192	+		1233	11868	804	813	1809	1809					-0.04846047587739122
CQILIENKI	9	Unmodified	_CQILIENKI_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.8602294921875	2	537.30481	1072.59507	0.48626	0.00026127	-3.2592	-0.0017512	-2.773	-0.0014899	537.3029154422827	55.752	0.3692	55.752	55.579	55.948	0					23	12	2	0	0	0	0.25458	1	12045	12045		5.7319	3.6721	1	148910			1234	2072	805	814	1810	1810					0.06167242776700732
CQRSRPSSDL	10	Unmodified	_CQRSRPSSDL_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.776611328125	2	574.777479	1147.5404	-0.27726	-0.00015936	-0.74435	-0.00042783	-1.0216	-0.0005872	574.7769375683928	22.377	0.25615	22.377	22.246	22.502	0					24	16	2	0	0	0	0.46827	1	2092	2092		1.3295	0.5359	1	15251			1235	1943	806	815	1811	1811					-0.027463760419777827
CRFHNRPNQ	9	Unmodified	_CRFHNRPNQ_					0	0	0			REV__nc|ENSG00000211751|P01850|TRBC1	REV__nc|ENSG00000211751|P01850|TRBC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3155517578125	2	586.280523	1170.54649	0.70175	0.00041142	1.0345	0.00060651	1.7362	0.0010179	586.2807447686321	99.565	0.095734	99.565	99.485	99.581	0					5	4	2	0	0	0	0.25875	1	25406	25406		1.8442	0	1	37723	+		1236	12881	807	816	1812	1812					-0.031958130197836
CRLNELHCIF	10	Unmodified	_CRLNELHCIF_					0	0	0			REV__ENST00000525674.5_1_6:133065623-133070889:-|nuORF	REV__ENST00000525674.5_1_6:133065623-133070889:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3043823242188	2	624.304818	1246.59508	-0.12491	-7.7982E-05	-0.32532	-0.0002031	-0.45023	-0.00028108	624.3045752239295	39.234	0.94282	39.234	38.539	39.482	0					50	35	2	0	0	0	0.46746	1	6986	6986		1.4819	0.15237	1	37479	+		1237	12322	808	817	1813	1813					-0.018350804949477606
CRLSLTKKFV	10	Unmodified	_CRLSLTKKFV_					0	0	0		ENST00000554746.1_1_14:85996623-86087517:+|nuORF	ENST00000554746.1_1_14:85996623-86087517:+|nuORF	ENST00000554746.1_1_14:85996623-86087517:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.856689453125	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.44	1	100.44	99.945	100.94	0								0	0	0	0.33916	1	25682	25682		1.1933	0.66858	1				1238	7118	809	818	1814	1814					0.10634899830370159
CRLSPLEHEL	10	Unmodified	_CRLSPLEHEL_					0	0	0		ENST00000379440.8_2_20:4681148-4681205:+|nuORF	ENST00000379440.8_2_20:4681148-4681205:+|nuORF	ENST00000379440.8_2_20:4681148-4681205:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8060302734375	2	598.808248	1195.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.48	1	105.48	104.98	105.98	0								0	0	0	0.33631	1	27174	27174		4.5289	0.19963	1				1239	6277	810	819	1815	1815					0.011965556572931746
CRPFEENGACK	11	Unmodified	_CRPFEENGACK_					0	0	0		ENSG00000185650|ENST00000439696|ZFP36L1;ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENSG00000185650|ENST00000439696|ZFP36L1	ENSG00000185650|ENST00000439696|ZFP36L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.7754516601562	2	627.273715	1252.53288	0.29341	0.00018405	1.7105	0.001073	2.0039	0.001257	627.2748166405719	99.706	0.43018	99.706	99.485	99.915	0					29	24	2	0	0	0	0.4147	1	25419	25419		0.96228	0.36078	1	475860			1240	5034	811	820	1816	1816					-0.08328851633928025
CRPQCVSVCSE	11	Unmodified	_CRPQCVSVCSE_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7540283203125	2	605.754301	1209.49405	0.59098	0.00035799	2.5113	0.0015212	3.1022	0.0018792	605.7537124351331	56.155	0.77707	56.155	55.948	56.725	0					73	28	4	0	0	0	0.30229	1	12170	12170		19.362	0	1	495180	+		1241	8653	812	821	1817	1817					-0.10231900259964277
CRRGYYFL	8	Unmodified	_CRRGYYFL_					0	0	0			REV__ENST00000258341.4_1_1:183114077-183114230:+|nuORF	REV__ENST00000258341.4_1_1:183114077-183114230:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7739868164062	2	539.268561	1076.52257	0.56699	0.00030576	-3.155	-0.0017014	-2.588	-0.0013956	539.2676375373394	84.233	0.15042	84.254	84.115	84.266	0.021744					6	5	2	0	0	0	0.35759	1	20575	20575		9.3474	0.75416	1	81806	+		1242	11224	813	822	1818	1818					-0.012630465061647556
CRRQVCLEL	9	Unmodified	_CRRQVCLEL_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7931518554688	2	560.291711	1118.56887	0.24904	0.00013954	1.1489	0.00064373	1.398	0.00078327	560.2923157717615	89.972	0.30019	89.972	89.716	90.017	0					19	11	2	0	0	0	0.24021	2	22440	22440;22455		13.906	0	1	135480	+		1243	11448	814	823	1819;1820	1819					0.014326503335951202
CRRQVCLEL	9	Unmodified	_CRRQVCLEL_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2918090820312	2	560.291711	1118.56887	0.24904	0.00013954	1.1489	0.00064373	1.398	0.00078327	560.2923157717615	89.972	0.30019	89.972	89.716	90.017	0					19	11	2	0	0	0	0.2418	1	22455	22455		13.906	0	1	135480	+		1244	11448	814	823	1821	1821					0.014326503335951202
CRRQVCLEL	9	Unmodified	_CRRQVCLEL_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2919921875	2	560.291711	1118.56887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.794	1	89.829	89.329	90.329	0.034065								0	0	0	0.22786	1	22282	22282		13.906	0	1		+		1245	11448	814	823	1822	1822					0.014326503335951202
CRSASSKQWR	10	Unmodified	_CRSASSKQWR_					0	0	0		ENST00000373115.4_1_10:73769153-73769792:+|nuORF	ENST00000373115.4_1_10:73769153-73769792:+|nuORF	ENST00000373115.4_1_10:73769153-73769792:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7392578125	2	604.801288	1207.58802	0.2812	0.00017007	1.916	0.0011588	2.1972	0.0013288	604.8025279346712	34.527	0.6547	34.527	34.377	35.032	0					30	24	2	0	0	0	0.31844	1	5619	5619		1.1933	0.39971	1	54326			1246	6223	815	824	1823	1823					-0.007466770511427967
CRYQREEHI	9	Unmodified	_CRYQREEHI_					0	0	0			REV__MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant	REV__MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.2916259765625	2	617.293296	1232.57204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.361	1	36.361	35.861	36.861	0								0	0	0	0.2927	1	6196	6196		0.52476	0	1		+		1247	8263	816	825	1824	1824					-0.03494383288011704
CSCSETQHEW	10	Unmodified	_CSCSETQHEW_					0	0	0			REV__chr6:113617423-113622885|488|25.57|0.0|21.29|-|0|TE_info:L2c,L2c_dup56548,L2,LINE,donor,+,113622885,113623090|LINC02541,None|4	REV__chr6:113617423-113622885|488|25.57|0.0|21.29|-|0|TE_info:L2c,L2c_dup56548,L2,LINE,donor,+,113622885,113623090|LINC02541,None|4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1996154785156	3	403.814829	1208.42266	-0.18962	-7.6573E-05	2.3993	0.00096886	2.2096	0.00089228	404.149145457412	23.445	0.33962	23.545	23.237	23.577	0.099739					44	33	2	0	0	0	0.31857	1	2226	2226		0.13989	0	1	20844	+		1248	7807	817	826	1825	1825					-0.17321696692943078
CSEDGTDGQP	10	Unmodified	_CSEDGTDGQP_					0	0	0		nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152;nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152	nc|ENSG00000103995|O94986-1|CEP152	nc|ENSG00000103995|O94986-1|CEP152	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.26165771484375	2	504.682378	1007.3502	0.075764	3.8237E-05	2.3031	0.0011623	2.3789	0.0012006	504.68352734682617	36.103	0.23736	36.103	36.022	36.259	0					12	8	2	0	0	0	0.31844	1	6120	6120		1.1933	0	1	12918			1249	1392	818	827	1826	1826					-0.15317707494875776
CSHHDALCT	9	Unmodified	_CSHHDALCT_					0	0	0			REV__ENST00000343898.9_1_11:71711023-71711502:+|nuORF	REV__ENST00000343898.9_1_11:71711023-71711502:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2316589355469	2	493.694569	985.374585	-0.025063	-1.2374E-05	1.1424	0.00056401	1.1174	0.00055164	493.6952563988751	29.524	0.57217	29.602	29.381	29.953	0.078289					75	32	4	0	0	0	0.25875	1	4094	4094		1.8442	1.0506	1	76554	+		1250	11478	819	828	1827	1827					-0.11868725822353099
CSHVEFGMWK	10	Unmodified	_CSHVEFGMWK_					0	0	0		ENSG00000185829|ENST00000336125|ARL17A;ENSG00000228696|ENST00000450673|ARL17B;nc|ENSG00000228696|Q8IVW1-4|ARL17A	ENSG00000185829|ENST00000336125|ARL17A	ENSG00000185829|ENST00000336125|ARL17A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.51483154296875	3	408.516055	1222.52633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.075	1	76.114	75.614	76.614	0.03923								0	0	0	0.33487	1	18106	18106		3.3196	1.5774	1				1251	5048	820	829	1828	1828					-0.07602744794621685
CSLLHEGIIW	10	Unmodified	_CSLLHEGIIW_					0	0	0			REV__ENST00000327492.3_1_22:41830740-41830857:-|nuORF	REV__ENST00000327492.3_1_22:41830740-41830857:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8029174804688	2	585.802434	1169.59032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.189	1	38.275	37.775	38.775	0.08688								0	0	0	0.33877	1	6621	6621		1.6526	0.96225	1		+		1252	11412	821	830	1829	1829					0.012303586339612593
CSNATFFVH	9	Unmodified	_CSNATFFVH_					0	0	0			REV__ENST00000268154.8_1_15:90623238-90623484:+|nuORF	REV__ENST00000268154.8_1_15:90623238-90623484:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2518310546875	2	513.229102	1024.44365	-0.10262	-5.2666E-05	-4.4126	-0.0022647	-4.5152	-0.0023174	513.226702967695	27.598	0.14678	27.681	27.623	27.77	0.083052					10	8	2	0	0	0	0.25875	1	3453	3453		1.8442	0	1	8631	+		1253	11267	822	831	1830	1830					-0.06759318531146619
CSPLEEPMVD	10	Unmodified	_CSPLEEPMVD_					0	0	0		nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.289306640625	2	560.238475	1118.4624	0.34621	0.00019396	-0.6507	-0.00036455	-0.30449	-0.00017059	560.7400473465875	58.248	0.5645	58.318	58.184	58.749	0.070473					24	19	2	0	0	0	0.31616	1	12697	12697		10.074	1.4806	1	84192			1254	3837	823	832	1831	1831					-0.09209569742233725
CSRRPQPD	8	Unmodified	_CSRRPQPD_					0	0	0			REV__PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant	REV__PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2523498535156	2	479.7298	957.445048	-0.61955	-0.00029722	-2.2714	-0.0010897	-2.891	-0.0013869	479.72853070879154	42.612	0.49173	42.612	42.454	42.946	0					25	16	2	0	0	0	0.3576	1	8095	8095		6.7232	0	1	58624	+		1255	10910	824	833	1832	1832					-0.03537684442369482
CSSSCNVGF	9	Unmodified	_CSSSCNVGF_					0	0	0			REV__nc|ENSG00000162591|O75095-2|MEGF6	REV__nc|ENSG00000162591|O75095-2|MEGF6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.1695251464844	2	452.170395	902.326238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.231	1	52.231	51.731	52.731	0								0	0	0	0.29233	1	10991	10991		0.6015	0.076735	1		+		1256	9891	825	834	1833	1833					-0.128832194622305
CSYGCSSC	8	Unmodified	_CSYGCSSC_					0	0	0			REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.1190185546875	2	405.116774	808.218996	0.51245	0.0002076	3.673	0.001488	4.1854	0.0016956	405.1187860729287	88.856	0.57129	88.856	88.648	89.219	0					81	23	4	0	0	0	0.54199	4	22118	22118;22166;22211;22256		0	0	1	1673800	+		1257	12916	826	835	1834;1835;1836;1837	1834					-0.1927851266812013
CSYGCSSC	8	Unmodified	_CSYGCSSC_					0	0	0			REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.1189880371094	2	405.116774	808.218996	0.15376	6.229E-05	4.0414	0.0016372	4.1952	0.0016995	405.1188237202703	107.61	0.30795	107.61	107.32	107.62	0					67	31	4	0	0	0	0.54199	1	27766	27766		0	0	1	1035300	+		1258	12916	826	835	1838	1838					-0.1927851266812013
CSYGCSSC	8	Unmodified	_CSYGCSSC_					0	0	0			REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	405.116774	808.218996	0.51245	0.0002076	3.673	0.001488	4.1854	0.0016956	405.1187860729287	88.856	0.57129	88.856	88.648	89.219	0	0.012649	-0.00094589	NaN	0	81	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1673800	+		1259	12916	826	835							-0.1927851266812013
CSYGCSSC	8	Unmodified	_CSYGCSSC_					0	0	0			REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	405.116774	808.218996	0.15376	6.229E-05	4.0414	0.0016372	4.1952	0.0016995	405.1188237202703	107.61	0.30795	107.61	107.32	107.62	0	-0.0046289	-0.0011127	NaN	0	67	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1035300	+		1260	12916	826	835							-0.1927851266812013
CSYGCSSC	8	Unmodified	_CSYGCSSC_					0	0	0			REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	405.116774	808.218996	0.083103	3.3667E-05	4.9623	0.0020103	5.0454	0.002044	405.1189403256743	88.799	1.3642	88.831	88.621	89.985	0.032257	-0.012649	9.877E-05	NaN	0	150	53	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2091500	+		1261	12916	826	835							-0.1927851266812013
CSYGCSSC	8	Unmodified	_CSYGCSSC_					0	0	0			REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	405.116774	808.218996	0.076253	3.0891E-05	5.5289	0.0022398	5.6051	0.0022707	405.1189629335536	107.6	0.39563	107.62	107.24	107.63	0.022224	0.0046289	9.2462E-05	NaN	0	56	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995020	+		1262	12916	826	835							-0.1927851266812013
CTDCEPMVI	9	Unmodified	_CTDCEPMVI_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000493153.5_1_13:51957718-51957853:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2609558105469	2	505.703214	1009.39187	0.28814	0.00014572	0.87581	0.0004429	1.164	0.00058861	505.703537087339	62.433	0.35039	62.506	62.309	62.659	0.072697					21	11	2	0	0	0	0.25579	1	13959	13959		4.3292	0	1	165170			1263	1329	827	836	1839	1839					-0.11244566331561145
CTEDQLFDLL	10	Unmodified	_CTEDQLFDLL_					0	0	0			REV__ENSG00000170871|ENST00000307659|KIAA0232	REV__ENSG00000170871|ENST00000307659|KIAA0232	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3397216796875	2	598.778822	1195.54309	0.32736	0.00019602	1.0999	0.00065857	1.4272	0.00085459	598.7793539519726	76.525	0.3931	76.525	76.445	76.838	0					16	13	2	0	0	0	0.28526	1	18402	18402		27.629	10.516	1	101720	+		1264	10228	828	837	1840	1840					-0.04685965427688643
CTLLLVSCHMN	11	Unmodified	_CTLLLVSCHMN_					0	0	0			REV__ENSG00000154165|ENST00000284311|GPR15	REV__ENSG00000154165|ENST00000284311|GPR15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.31689453125	2	617.293062	1232.57157	-0.032479	-2.0049E-05	0.8028	0.00049556	0.77032	0.00047551	617.2935103789929	60.379	0.35059	60.379	60.183	60.533	0					14	12	2	0	0	0	0.3104	1	13413	13413		7.1017	0.89594	1	85889	+		1265	9705	829	838	1841	1841					-0.03541262323733463
CTRCCMGH	8	Unmodified	_CTRCCMGH_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.6603698730469	2	455.66116	909.307768	0.61241	0.00027905	-2.1641	-0.00098608	-1.5517	-0.00070703	455.66010418533523	63.766	0.41525	63.766	63.531	63.946	0					27	14	2	0	0	0	0.53858	1	14472	14472		2.3027	1.5091	1	158390			1266	1840	830	839	1842	1842					-0.15051375909433773
CTRCCMGH	8	Unmodified	_CTRCCMGH_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	455.66116	909.307768	0.61241	0.00027905	-2.1641	-0.00098608	-1.5517	-0.00070703	455.66010418533523	63.766	0.41525	63.766	63.531	63.946	0	-0.0057152	-6.7572E-05	NaN	2.3027	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158390			1267	1840	830	839							-0.15051375909433773
CTRCCMGH	8	Unmodified	_CTRCCMGH_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	455.66116	909.307768	0.33664	0.00015339	-2.0516	-0.00093483	-1.715	-0.00078144	455.6601207986586	63.707	0.95814	63.778	63.388	64.346	0.071018	0.0057152	3.4932E-05	NaN	2.3027	48	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544660			1268	1840	830	839							-0.15051375909433773
CTVIYGLHPNW	11	Unmodified	_CTVIYGLHPNW_					0	0	0			REV__CKB|p.L281V|1|0.24|ENSG00000166165|chr14:103520248-103520248|G/C|missense_variant	REV__CKB|p.L281V|1|0.24|ENSG00000166165|chr14:103520248-103520248|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8822937011719	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.232	1	94.271	93.771	94.771	0.038086								0	0	0	0.33867	1	23632	23632		1.2148	0.51716	1		+		1269	7820	831	840	1843	1843					-0.016068539630168743
CVAVWFCRF	9	Unmodified	_CVAVWFCRF_					0	0	0			REV__ENST00000533616.5_1_11:129939734-129939815:+|nuORF	REV__ENST00000533616.5_1_11:129939734-129939815:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2957153320312	2	565.76734	1129.52013	-0.055485	-3.1392E-05	-0.12572	-7.1129E-05	-0.18121	-0.00010252	565.7669301624935	72.134	0.66219	72.134	71.92	72.582	0					29	22	2	0	0	0	0.25504	1	17166	17166		4.756	0	1	124310	+		1270	12367	832	841	1844	1844					-0.03945218235503489
CVCAVGWA	8	Unmodified	_CVCAVGWA_					0	0	0		nc|ENSG00000105664|P49747-2|COMP;CON__ENSEMBL:ENSBTAP00000006074;ENSG00000105664|ENST00000222271|COMP	nc|ENSG00000105664|P49747-2|COMP	nc|ENSG00000105664|P49747-2|COMP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2264404296875	2	404.677659	807.340766	-0.3245	-0.00013132	3.318	0.0013427	2.9935	0.0012114	404.6792296333551	27.686	0.092588	27.768	27.69	27.783	0.082132					6	4	2	0	0	0	0.3576	1	3488	3488		0.79363	0	1	4102.8		+	1271	207	833	842	1845	1845					-0.07061102523448426
CVCVCFRSPF	10	Unmodified	_CVCVCFRSPF_					0	0	0			REV__ENST00000548357.2_2_16:21397180-21397309:+|nuORF	REV__ENST00000548357.2_2_16:21397180-21397309:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2582397460938	2	580.756115	1159.49768	0.49377	0.00028676	2.5371	0.0014735	3.0309	0.0017602	580.7557071628164	91.163	0.81796	91.163	90.834	91.652	0					99	29	4	0	0	0	0.20801	2	22845	22845;22874		32.786	0.4802	1	426980	+		1272	12425	834	843	1846;1847	1846					-0.07569185695433589
CVCVCFRSPF	10	Unmodified	_CVCVCFRSPF_					0	0	0			REV__ENST00000548357.2_2_16:21397180-21397309:+|nuORF	REV__ENST00000548357.2_2_16:21397180-21397309:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.258544921875	2	580.756115	1159.49768	0.36025	0.00020922	3.5372	0.0020543	3.8975	0.0022635	580.7558950493677	91.158	0.96356	91.194	90.729	91.692	0.035446					111	34	5	0	0	0	0.3939	1	22655	22655		12.532	1.7076	1	563700	+		1273	12425	834	843	1848	1848					-0.07569185695433589
CVDMRLLNL	9	Unmodified	_CVDMRLLNL_					0	0	0			REV__ENST00000372725.5_1_10:76585359-76602521:+|nuORF	REV__ENST00000372725.5_1_10:76585359-76602521:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.78271484375	2	538.783187	1075.55182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.035	1	61.108	60.608	61.608	0.073421								0	0	0	0.19239	1	13536	13536		19.257	1.1106	1		+		1274	11611	835	844	1849	1849					0.017067297277890248
CVDWRTPAF	9	Unmodified	_CVDWRTPAF_					0	0	0		ENSG00000184956|ENST00000421673|MUC6	ENSG00000184956|ENST00000421673|MUC6	ENSG00000184956|ENST00000421673|MUC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7581176757812	2	547.758027	1093.5015	0.13283	7.2759E-05	-0.41499	-0.00022732	-0.28216	-0.00015456	547.7576843919584	90.006	1.1374	90.04	89.77	90.907	0.034065					139	46	4	0	0	0	0.24365	1	22505	22505		13.508	4.9146	1	7970500			1275	5000	836	845	1850	1850					-0.04151056605701342
CVHDRAMSF	9	Unmodified	_CVHDRAMSF_					0	0	0			REV__ENST00000257915.9_1_12:51500364-51501019:-|nuORF	REV__ENST00000257915.9_1_12:51500364-51501019:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2354736328125	2	533.233861	1064.45317	0.52201	0.00027835	1.2533	0.00066829	1.7753	0.00094664	533.2344271176127	94.285	0.61876	94.323	94.123	94.742	0.038086					64	24	5	0	0	0	0.33704	1	23711	23711		1.8442	1.0506	1	350120	+		1276	11219	837	846	1851	1851					-0.07647873517248627
CVHDRAMSF	9	Unmodified	_CVHDRAMSF_					0	0	0			REV__ENST00000257915.9_1_12:51500364-51501019:-|nuORF	REV__ENST00000257915.9_1_12:51500364-51501019:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	533.233861	1064.45317	0.52201	0.00027835	1.2533	0.00066829	1.7753	0.00094664	533.2344271176127	94.285	0.61876	94.323	94.123	94.742	0.038086	0.0011947	0.00015547	NaN	1.8442	64	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350120	+		1277	11219	837	846							-0.07647873517248627
CVKKLQGR	8	Unmodified	_CVKKLQGR_					0	0	0		tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1	tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1	tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.2790222167969	2	466.278929	930.543305	0.31228	0.00014561	0.40585	0.00018924	0.71813	0.00033485	466.27910889573354	77.051	0.98986	77.051	76.331	77.32	0					55	38	2	0	0	0	0.53858	1	18631	18631		2.3027	0	1	312140			1278	13742	838	847	1852	1852					0.07525543873487095
CVKRIFMGQ	9	Unmodified	_CVKRIFMGQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2854614257812	2	541.285897	1080.55724	-0.29214	-0.00015813	-0.53295	-0.00028848	-0.82509	-0.00044661	541.2855243325398	19.472	0.45004	19.472	19.314	19.764	0					108	51	3	0	0	0	0.33704	1	1378	1378		1.8442	0	1	56667	+		1279	8487	839	848	1853	1853					0.020184533102565183
CVKRIFMGQ	9	Unmodified	_CVKRIFMGQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	541.285897	1080.55724	-0.29214	-0.00015813	-0.53295	-0.00028848	-0.82509	-0.00044661	541.2855243325398	19.472	0.45004	19.472	19.314	19.764	0	-0.026464	0.00025888	NaN	1.8442	108	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56667	+		1280	8487	839	848							0.020184533102565183
CVLFFTFYF	9	Unmodified	_CVLFFTFYF_					0	0	0			REV__nc|ENSG00000163867|O95789-4|ZMYM6	REV__nc|ENSG00000163867|O95789-4|ZMYM6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2432861328125	2	593.785721	1185.55689	0.28452	0.00016895	-0.34762	-0.00020641	-0.063093	-3.7464E-05	593.7856783433624	86.32	1.0362	86.345	85.82	86.856	0.025169					71	41	2	0	0	0	0.25504	1	21327	21327		4.756	0.42677	1	253910	+		1281	12831	840	849	1854	1854					-0.028466431379683854
CVLGYVAVFD	10	Unmodified	_CVLGYVAVFD_					0	0	0		ENST00000557951.1_1_15:73996325-74000993:+|nuORF	ENST00000557951.1_1_15:73996325-74000993:+|nuORF	ENST00000557951.1_1_15:73996325-74000993:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.781982421875	2	543.270435	1084.52632	0.19005	0.00010325	0.39755	0.00021598	0.5876	0.00031923	543.2704324973952	86.348	0.62766	86.348	85.985	86.613	0					51	23	3	0	0	0	0.31712	1	21466	21466		6.7232	0	1	169670			1282	7139	841	850	1855	1855					-0.012564215229986075
CVNWNRYY	8	Unmodified	_CVNWNRYY_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2706298828125	2	559.247826	1116.4811	0.63857	0.00035712	-4.2283	-0.0023646	-3.5897	-0.0020075	559.246563323288	55.092	0.34203	55.092	54.951	55.293	0					19	12	2	0	0	0	0.3576	1	11912	11912		2.3027	0.24298	1	75030			1283	1189	842	851	1856	1856					-0.07248227265517926
CVPTELSAI	9	Unmodified	_CVPTELSAI_					0	0	0		ENSG00000125378|ENST00000245451|BMP4;ENSG00000125845|ENST00000378827|BMP2	ENSG00000125378|ENST00000245451|BMP4	ENSG00000125378|ENST00000245451|BMP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.25537109375	2	466.741511	931.468469	0.41103	0.00019184	-0.87156	-0.00040679	-0.46053	-0.00021495	466.74108134013943	60.673	1.4027	60.673	60.045	61.447	0					71	50	2	0	0	0	0.25051	1	13713	13713		7.9102	0	1	140810			1284	2290	843	852	1857	1857					-6.8344842247825E-06
CVRAILNFVP	10	Unmodified	_CVRAILNFVP_					0	0	0		ENST00000341567.8_1_7:66418291-66420567:+|nuORF	ENST00000341567.8_1_7:66418291-66420567:+|nuORF	ENST00000341567.8_1_7:66418291-66420567:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8238525390625	2	566.320794	1130.62703	0.43342	0.00024546	0.17279	9.7853E-05	0.60621	0.00034331	566.8233981515507	99.31	0.40701	99.31	99.078	99.485	0					41	26	3	0	0	0	0.41688	1	25341	25341		10.074	1.9184	1	152700			1285	6088	844	853	1858	1858					0.06694655250521464
CVRKVSRI	8	Unmodified	_CVRKVSRI_					0	0	0		ENST00000462302.5_1_X:100871678-100872515:-|nuORF	ENST00000462302.5_1_X:100871678-100872515:-|nuORF	ENST00000462302.5_1_X:100871678-100872515:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2838134765625	2	480.792204	959.569854	0.019665	9.4549E-06	-0.89538	-0.00043049	-0.87572	-0.00042104	480.7917379833291	95.36	0.62544	95.36	94.779	95.405	0					45	26	2	0	0	0	0.3576	1	23975	23975		2.3027	0	1	141020			1286	6618	845	854	1859	1859					0.08845232764815592
CVRKVSRI	8	Unmodified	_CVRKVSRI_					0	0	0		ENST00000462302.5_1_X:100871678-100872515:-|nuORF	ENST00000462302.5_1_X:100871678-100872515:-|nuORF	ENST00000462302.5_1_X:100871678-100872515:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	480.792204	959.569854	-0.056253	-2.7046E-05	-0.65922	-0.00031695	-0.71547	-0.00034399	480.7917438354528	95.247	0.56533	95.286	94.863	95.429	0.038864	-0.037158	0.00014106	NaN	2.3027	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98817			1287	6618	845	854							0.08845232764815592
CVSSFFAISW	10	Unmodified	_CVSSFFAISW_					0	0	0		nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1;ENSG00000134258|ENST00000369458|VTCN1	nc|ENSG00000134258|Q7Z7D3-2|VTCN1	nc|ENSG00000134258|Q7Z7D3-2|VTCN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.763427734375	2	573.76806	1145.52157	0.28501	0.00016353	-4.019	-0.002306	-3.734	-0.0021425	573.7636521447669	56.153	2.6089	56.153	55.608	58.217	0					426	94	8	0	0	0	0.060429	6	12187	12145;12187;12289;12531;12581;12612		54.774	8.7526	1	17838000			1288	2653	846	855	1860;1861;1862;1863;1864;1865	1861					-0.04537305665735403
CVSSFFAISW	10	Unmodified	_CVSSFFAISW_					0	0	0		nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1;ENSG00000134258|ENST00000369458|VTCN1	nc|ENSG00000134258|Q7Z7D3-2|VTCN1	nc|ENSG00000134258|Q7Z7D3-2|VTCN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.763671875	2	573.76806	1145.52157	0.22505	0.00012913	-4.219	-0.0024207	-3.9939	-0.0022916	573.7636467612152	56.096	2.5815	56.162	55.705	58.287	0.066448					399	97	8	0	0	0	0.060429	6	12083	12037;12083;12132;12272;12414;12456		54.774	8.7526	1	17614000			1289	2653	846	855	1866;1867;1868;1869;1870;1871	1867					-0.04537305665735403
CWCHSGLIA	9	Unmodified	_CWCHSGLIA_					0	0	0			REV__ENST00000481773.1_1_3:113933257-113952219:+|nuORF	REV__ENST00000481773.1_1_3:113933257-113952219:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2193908691406	2	495.220223	988.425892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.359	1	23.359	22.859	23.859	0								0	0	0	0.29233	1	2385	2385		0.6015	0	1		+		1290	12093	847	856	1872	1872					-0.06878357057621542
CWCIFTFSF	9	Unmodified	_CWCIFTFSF_					0	0	0			REV__ENST00000248450.8_1_2:219128890-219129148:-|nuORF	REV__ENST00000248450.8_1_2:219128890-219129148:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.2451782226562	2	577.245906	1152.47726	0.34501	0.00019915	-0.62392	-0.00036016	-0.27891	-0.000161	577.2451397260783	96.119	0.37353	96.119	95.925	96.299	0					43	19	3	0	0	0	0.25979	1	24355	24355		11.64	3.4848	1	208610	+		1291	11207	848	857	1873	1873					-0.09288033083589653
CWCIFTFSF	9	Unmodified	_CWCIFTFSF_					0	0	0			REV__ENST00000248450.8_1_2:219128890-219129148:-|nuORF	REV__ENST00000248450.8_1_2:219128890-219129148:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7648315429688	2	577.245906	1152.47726	0.38949	0.00022483	-0.73359	-0.00042346	-0.3441	-0.00019863	577.2451674887753	96.09	0.3465	96.129	95.946	96.293	0.039772					40	17	3	0	0	0	0.17247	2	24209	24194;24209		21.747	6.4982	1	221670	+		1292	11207	848	857	1874;1875	1875					-0.09288033083589653
CWEDERYF	8	Unmodified	_CWEDERYF_					0	0	0			REV__NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	REV__NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2293701171875	2	574.229299	1146.44404	0.65073	0.00037367	-0.056223	-3.2285E-05	0.59451	0.00034139	574.229133958032	79.79	0.55022	79.79	79.59	80.14	0					40	18	3	0	0	0	0.53423	1	19393	19393		5.2307	0.90143	1	363040	+		1293	10982	849	858	1876	1876					-0.12331943601930107
CWLFHQLRHQY	11	Unmodified	_CWLFHQLRHQY_					0	0	0			REV__ENST00000264156.2_1_2:136598161-136598251:-|nuORF	REV__ENST00000264156.2_1_2:136598161-136598251:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.30035400390625	3	510.918951	1529.73502	0.17987	9.1899E-05	-0.031679	-1.6185E-05	0.14819	7.5713E-05	510.9189135861664	59.551	0.63371	59.623	59.52	60.154	0.072338					35	24	2	0	0	0	0.311	1	13079	13079		0.50596	0	1	168520	+		1294	11250	850	859	1877	1877					-0.008655801661916485
CWLPWLSTR	9	Unmodified	_CWLPWLSTR_					0	0	0		ENST00000227638.7_1_11:93913051-93913207:+|nuORF	ENST00000227638.7_1_11:93913051-93913207:+|nuORF	ENST00000227638.7_1_11:93913051-93913207:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2974243164062	2	581.297319	1160.58008	0.17354	0.00010088	-0.88104	-0.00051215	-0.7075	-0.00041127	581.2969218916453	33.012	0.5886	33.087	32.891	33.479	0.074322					49	23	3	0	0	0	0.34646	1	5169	5169		0.6015	0	1	95290			1295	5805	851	860	1878	1878					0.006217956993850748
CWVHLPDR	8	Unmodified	_CWVHLPDR_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|46|1|anti-sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|57|2|anti-sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|46|1|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.253662109375	2	513.252911	1024.49127	-0.096837	-4.9702E-05	0.45811	0.00023512	0.36127	0.00018542	513.2530338412275	27.414	0.46398	27.501	27.323	27.787	0.0867					82	35	3	0	0	0	0.52502	1	3426	3426		9.3474	1.4373	1	363370			1296	13413	852	861	1879	1879					-0.019996195402882222
CWVHLPDR	8	Unmodified	_CWVHLPDR_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|46|1|anti-sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|57|2|anti-sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|46|1|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	513.252911	1024.49127	-0.12441	-6.3854E-05	0.17616	9.0416E-05	0.051751	2.6562E-05	513.2528690228219	27.529	0.47477	27.529	27.344	27.818	0	0.014037	-0.00011305	NaN	9.3474	73	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313210			1297	13413	852	861							-0.019996195402882222
CWVPGQHGVF	10	Unmodified	_CWVPGQHGVF_					0	0	0			REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7	REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7698364257812	2	565.266019	1128.51748	0.52219	0.00029518	2.9407	0.0016623	3.4629	0.0019574	565.7686934477584	98.093	0.28674	98.135	97.983	98.27	0.041939					28	14	3	0	0	0	0.43672	1	24825	24825		7.2892	0.56607	1	46014	+		1298	9092	853	862	1880	1880					-0.041633503687990014
CWYYNSRK	8	Unmodified	_CWYYNSRK_					0	0	0			REV__ENST00000549999.1_1_12:110386574-110386628:-|nuORF	REV__ENST00000549999.1_1_12:110386574-110386628:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8399047851562	2	560.255651	1118.49675	0.32549	0.00018236	-1.2912	-0.00072342	-0.96574	-0.00054106	560.2551844798112	48.261	0.52594	48.261	48.018	48.544	0					24	17	2	0	0	0	0.3576	1	9737	9737		2.3027	0	1	68179	+		1299	12429	854	863	1881	1881					-0.05775940748458197
CWYYNSRK	8	Unmodified	_CWYYNSRK_					0	0	0			REV__ENST00000549999.1_1_12:110386574-110386628:-|nuORF	REV__ENST00000549999.1_1_12:110386574-110386628:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	560.255651	1118.49675	0.52784	0.00029573	-1.6096	-0.00090177	-1.0817	-0.00060604	560.25502972707	48.19	0.56643	48.27	48.004	48.571	0.080029	0.0047519	-0.00010667	NaN	2.3027	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60834	+		1300	12429	854	863							-0.05775940748458197
CYAVRTVP	8	Unmodified	_CYAVRTVP_					0	0	0		ENSG00000151025|ENST00000376351|GPR158	ENSG00000151025|ENST00000376351|GPR158	ENSG00000151025|ENST00000376351|GPR158	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9004211425781	2	454.736563	907.458573	-0.14146	-6.4329E-05	0.34784	0.00015818	0.20638	9.3849E-05	454.736653961122	25.134	0.0718	25.23	25.188	25.259	0.096073					7	5	2	0	0	0	0.3576	1	2765	2765		0.79363	0	1	5615.4			1301	3444	855	864	1882	1882					0.0011417333688541476
CYAYAVVPF	9	Unmodified	_CYAYAVVPF_					0	0	0			REV__ENSG00000116649|ENST00000376957|SRM	REV__ENSG00000116649|ENST00000376957|SRM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7488403320312	2	516.746596	1031.47864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.074	1	70.134	69.634	70.634	0.060562								0	0	0	0.2699	1	16275	16275		5.2307	2.3415	1		+		1302	8812	856	865	1883	1883					-0.0358407572316537
CYFFILQTHH	10	Unmodified	_CYFFILQTHH_					0	0	0			REV__nc|ENSG00000084112|Q8WYL5-2|SSH1	REV__nc|ENSG00000084112|Q8WYL5-2|SSH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.8794860839844	3	436.877981	1307.61211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.057	1	82.079	81.579	82.579	0.021866								0	0	0	0.33952	1	19927	19927		0.77653	0.14971	1		+		1303	12758	857	866	1884	1884					-0.029388366174771363
CYGPHGRQKF	10	Unmodified	_CYGPHGRQKF_					0	0	0		nc|ENSG00000020219|A6NM43|CCT8L1P;ENSG00000198445|ENST00000359963|CCT8L2	nc|ENSG00000020219|A6NM43|CCT8L1P	nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7787475585938	2	596.78765	1191.56075	0.10226	6.103E-05	2.9683	0.0017715	3.0706	0.0018325	596.7898750748608	50.004	0.52937	50.004	49.764	50.294	0					48	18	3	0	0	0	0.41688	1	10392	10392		10.074	2.7847	1	154850			1304	5366	858	867	1885	1885					-0.02737160591527754
CYHCAQKG	8	Unmodified	_CYHCAQKG_					0	0	0		SEC23B-ZCCHC7|1|fusion;ENST00000481507.5_1_9:37326993-37357262:+|nuORF;GLIPR2-ZCCHC7|1|fusion;SEC23B-ZCCHC7|2|fusion;ENSG00000147905|ENST00000336755|ZCCHC7	SEC23B-ZCCHC7|1|fusion	SEC23B-ZCCHC7|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.18890380859375	2	455.188923	908.363292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.507	1	26.599	26.099	27.099	0.091507								0	0	0	0.38822	1	3151	3151		0.79363	0.79363	1				1305	13359	859	868	1886	1886					-0.09455503125809628
CYHVFHLN	8	Unmodified	_CYHVFHLN_					0	0	0		nc|ENSG00000086102|Q12986-3|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;ENSG00000086102|ENST00000379540|NFX1	nc|ENSG00000086102|Q12986-3|NFX1	nc|ENSG00000086102|Q12986-3|NFX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7371215820312	2	516.739637	1031.46472	0.088372	4.5665E-05	-3.5379	-0.0018282	-3.4495	-0.0017825	516.7370485410178	45.78	1.191	45.865	45.235	46.426	0.085617					58	45	2	0	0	0	0.3576	1	8913	8913		2.8892	0.82947	1	94947			1306	974	860	869	1887	1887					-0.049753084316080276
CYKCEYRK	8	Unmodified	_CYKCEYRK_					0	0	0			REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101	REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7520141601562	2	546.751887	1091.48922	-0.11833	-6.47E-05	-0.26405	-0.00014437	-0.38238	-0.00020907	546.7517595203657	27.877	0.66543	27.877	27.684	28.35	0					73	37	3	0	0	0	0.54097	1	3766	3766		0.69038	0.088878	1	62631	+		1307	10544	861	870	1888	1888					-0.0528641634041378
CYKLQFLF	8	Unmodified	_CYKLQFLF_					0	0	0		ENST00000342266.4_1_6:131571499-131571742:+|nuORF	ENST00000342266.4_1_6:131571499-131571742:+|nuORF	ENST00000342266.4_1_6:131571499-131571742:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.277587890625	2	531.278063	1060.54157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.5	1	102.54	102.04	103.04	0.040916								0	0	0	0.38822	1	26142	26142		0.79363	0	1				1308	6089	862	871	1889	1889					0.01372490064863996
CYLLMRQP	8	Unmodified	_CYLLMRQP_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.27294921875	2	512.259348	1022.50414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.497	1	39.586	39.086	40.086	0.088562								0	0	0	0.38822	1	7015	7015		2.3027	0.4585	1				1309	4368	863	872	1890	1890					-0.006209244724004748
CYLTLPLPL	9	Unmodified	_CYLTLPLPL_					0	0	0		nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000485450.5_1_3:49315728-49349110:-|nuORF	nc|ENSG00000114316|Q13107-2|USP4	nc|ENSG00000114316|Q13107-2|USP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7637939453125	2	516.793546	1031.57254	0.098568	5.0939E-05	3.0328	0.0015673	3.1314	0.0016183	516.7948261649941	21.321	0.1882	21.423	21.293	21.481	0.10178					32	18	2	0	0	0	0.25981	1	1727	1727		0.6015	0	1	13002			1310	1835	864	873	1891	1891					0.05801643379095367
CYRLRKVF	8	Unmodified	_CYRLRKVF_					0	0	0			REV__nc|ENSG00000102445|Q9H714-3|RUBCNL	REV__nc|ENSG00000102445|Q9H714-3|RUBCNL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.808837890625	2	542.807854	1083.60115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.03	1	101.03	100.53	101.53	0								0	0	0	0.38822	1	25858	25858		5.2307	1.6342	1		+		1311	8451	865	874	1892	1892					0.06269805798910966
CYRYRRAN	8	Unmodified	_CYRYRRAN_					0	0	0		nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6|SLC45A4	nc|ENSG00000022567|Q5BKX6|SLC45A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2849731445312	2	551.272167	1100.52978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.843	1	39.843	39.343	40.343	0								0	0	0	0.38822	1	7246	7246		5.2307	0.90143	1				1312	480	866	875	1893	1893					-0.01646313905757779
CYRYRRAN	8	Unmodified	_CYRYRRAN_					0	0	0		nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6|SLC45A4	nc|ENSG00000022567|Q5BKX6|SLC45A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2844848632812	2	551.272167	1100.52978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.869	1	39.869	39.369	40.369	0								0	0	0	0.38822	1	7254	7254		8.5933	4.264	1				1313	480	866	875	1894	1894					-0.01646313905757779
CYSFLFVSF	9	Unmodified	_CYSFLFVSF_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|310|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|310|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|310|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7592163085938	2	556.759704	1111.50485	0.5002	0.00027849	-0.77719	-0.00043271	-0.27699	-0.00015422	556.7594031647434	57.976	0.51621	58.045	57.869	58.385	0.068375					43	19	3	0	0	0	0.14091	1	12600	12600		25.399	9.2502	1	217620			1314	7400	867	876	1895	1895					-0.04643806551689522
CYSTPSGCLEL	11	Unmodified	_CYSTPSGCLEL_					0	0	0		ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000162825|P0DPF2|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.75146484375	2	586.75175	1171.48895	-0.038052	-2.2327E-05	-0.36176	-0.00021226	-0.39981	-0.00023459	586.7513075780392	42.974	0.3532	42.974	42.796	43.149	0					20	11	2	0	0	0	0.38315	1	8193	8193		8.1555	1.9497	1	54263			1315	3862	868	877	1896	1896					-0.08993880850903224
CYSTPSGCLEL	11	Unmodified	_CYSTPSGCLEL_					0	0	0		ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000162825|P0DPF2|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	586.75175	1171.48895	0.21955	0.00012882	-0.86591	-0.00050807	-0.64635	-0.00037925	586.7511763266759	42.918	0.43287	43.008	42.754	43.187	0.089764	0.016698	-0.00048253	NaN	8.1555	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45334			1316	3862	868	877							-0.08993880850903224
CYTPAPEE	8	Unmodified	_CYTPAPEE_					0	0	0			REV__ENST00000542400.5_1_12:125432350-125435235:-|nuORF	REV__ENST00000542400.5_1_12:125432350-125435235:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.1886901855469	2	455.186568	908.358584	-0.1964	-8.94E-05	-0.73398	-0.0003341	-0.93038	-0.0004235	455.18865947672066	26.899	0.76802	26.985	26.646	27.414	0.086699					107	55	3	0	0	0	0.54081	1	3368	3368		0.79363	0	1	21725	+		1317	9638	869	878	1897	1897					-0.09926108787601606
CYVLPNEA	8	Unmodified	_CYVLPNEA_					0	0	0			REV__ENSG00000275023|ENST00000621332|MLLT6	REV__ENSG00000275023|ENST00000621332|MLLT6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.7117919921875	2	454.712753	907.410954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.357	1	46.443	45.943	46.943	0.085617								0	0	0	0.38822	1	9085	9085		2.8892	2.0956	1		+		1318	11134	870	879	1898	1898					-0.046455256539843504
CYYEGGMD	8	Unmodified	_CYYEGGMD_					0	0	0			REV__nc|ENSG00000124299|P12955-3|PEPD	REV__nc|ENSG00000124299|P12955-3|PEPD	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.723388671875	2	469.156954	936.299354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.37	1	107.39	106.89	107.89	0.025711								0	0	0	0.38822	1	27505	27505		0.79363	0	1		+		1319	8953	871	880	1899	1899					-0.17134328073416327
DAAAVLVSR	9	Unmodified	_DAAAVLVSR_					0	0	0		nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	nc|ENSG00000141556|Q9BTW9-5|TBCD	nc|ENSG00000141556|Q9BTW9-5|TBCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.2578125	2	451.258717	900.50288	-0.35466	-0.00016005	-1.3433	-0.00060617	-1.698	-0.00076622	451.25787861714736	41.306	0.31363	41.306	41.146	41.459	0					17	10	3	0	0	0	0.20966	1	7710	7710		17.443	3.0373	1	60522			1320	3067	872	881	1900	1900					0.048649007547169276
DAAAVLVSR	9	Unmodified	_DAAAVLVSR_					0	0	0		nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	nc|ENSG00000141556|Q9BTW9-5|TBCD	nc|ENSG00000141556|Q9BTW9-5|TBCD	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	451.258717	900.50288	-0.41701	-0.00018818	-1.0575	-0.00047721	-1.4745	-0.00066539	451.25831080580326	41.274	0.2454	41.364	41.153	41.398	0.089764	0.028633	0.00014231	NaN	17.443	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37373			1321	3067	872	881							0.048649007547169276
DAAEFPNQIP	10	Unmodified	_DAAEFPNQIP_					0	0	0		ENSG00000138400|ENST00000374412|MDH1B	ENSG00000138400|ENST00000374412|MDH1B	ENSG00000138400|ENST00000374412|MDH1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2843017578125	2	551.264196	1100.51384	0.34423	0.00018976	1.3935	0.00076821	1.7378	0.00095797	551.2650770164568	37.153	0.40922	37.153	36.983	37.393	0					19	15	2	0	0	0	0.34138	1	6435	6435		18.146	5.6148	1	31352			1322	2910	873	882	1901	1901					-0.03239741661673179
DAAEIRLVSK	10	Unmodified	_DAAEIRLVSK_					0	0	0		ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENSG00000115053|ENST00000322723|NCL	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.3173828125	2	551.316763	1100.61897	0.35229	0.00019422	-0.12569	-6.9297E-05	0.2266	0.00012493	551.3167827525454	37.179	0.84886	37.179	36.962	37.811	0					73	31	4	0	0	0	0.13921	1	6415	6415		40.714	24.148	1	288020			1323	1871	874	883	1902	1902					0.07268799534745085
DAAEIRLVSK	10	Unmodified	_DAAEIRLVSK_					0	0	0		ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENSG00000115053|ENST00000322723|NCL	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3175659179688	2	551.316763	1100.61897	0.41412	0.00022831	0.056729	3.1276E-05	0.47085	0.00025959	551.3168932426319	37.066	0.74603	37.15	36.97	37.716	0.084476					55	26	3	0	0	0	0.021674	1	6267	6267		66.55	33.105	1	279360			1324	1871	874	883	1903	1903					0.07268799534745085
DAAHPTNVQR	10	Unmodified	_DAAHPTNVQR_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.778076171875	2	554.778336	1107.54212	-0.20371	-0.00011301	0.054312	3.0131E-05	-0.1494	-8.2884E-05	554.7782646413035	18.34	0.57226	18.34	18.163	18.735	0					195	66	4	0	0	0	0.13912	2	1093	1093;1123		40.725	17.989	1	330720			1325	4256	875	884	1904;1905	1904					-0.00734998961729616
DAAHPTNVQRL	11	Unmodified	_DAAHPTNVQRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.88262939453125	3	407.882671	1220.62618	0.069462	2.8332E-05	-0.21175	-8.6369E-05	-0.14229	-5.8036E-05	407.8826081491352	29.762	0.85896	29.762	29.562	30.42	0					102	41	4	0	0	0	0.043734	3	4243	4202;4243;4289		59.177	47.002	1	335850			1326	4256	876	885	1906;1907;1908	1907					0.02469532135182817
DAAHPTNVQRL	11	Unmodified	_DAAHPTNVQRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.8827209472656	3	407.882671	1220.62618	-0.29036	-0.00011843	0.27862	0.00011365	-0.011738	-4.7877E-06	407.88279713358895	29.71	0.6902	29.785	29.59	30.28	0.075403					133	42	5	0	0	0	0.03648	3	4101	4064;4101;4144		60.943	51.7	1	299330			1327	4256	876	885	1909;1910;1911	1910					0.02469532135182817
DAAKDSILR	9	Unmodified	_DAAKDSILR_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7748107910156	2	494.774731	987.534909	-0.0046523	-2.3018E-06	0.31548	0.00015609	0.31083	0.00015379	494.7748269787883	27.992	0.57256	27.992	27.818	28.391	0					87	32	4	0	0	0	0.1019	2	3724	3686;3724		32.037	15.095	1	295690			1328	2398	877	886	1912;1913	1913					0.040642684378553895
DAAKDSILR	9	Unmodified	_DAAKDSILR_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7751159667969	2	494.774731	987.534909	-0.017147	-8.4841E-06	0.45415	0.0002247	0.437	0.00021622	494.7749033314866	27.887	0.59914	27.969	27.769	28.368	0.082132					89	35	4	0	0	0	0.078774	2	3525	3525;3568		37.075	16.66	1	281910			1329	2398	877	886	1914;1915	1914					0.040642684378553895
DAATFSSLR	9	Unmodified	_DAATFSSLR_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;BICD2-IPPK|1|fusion;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2453308105469	2	484.245806	966.47706	-0.4371	-0.00021166	0.069393	3.3603E-05	-0.36771	-0.00017806	484.24577961259143	42.753	0.2651	42.843	42.65	42.915	0.089764					11	9	2	0	0	0	0.26705	1	7998	7998		10.8	2.644	1	25006			1330	88	878	887	1916	1916					-0.0075199348757450934
DAATFSSLR	9	Unmodified	_DAATFSSLR_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;BICD2-IPPK|1|fusion;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.245806	966.47706	-0.5886	-0.00028503	-0.11522	-5.5794E-05	-0.70382	-0.00034082	484.2457995359678	42.801	0.26239	42.801	42.654	42.916	0	-0.021042	-3.6217E-05	NaN	10.8	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44806			1331	88	878	887							-0.0075199348757450934
DADAPDPRL	9	Unmodified	_DADAPDPRL_					0	0	0		nc|ENSG00000134326|Q5EBM0-2|CMPK2;nc|ENSG00000134326|Q5EBM0-3|CMPK2;nc|ENSG00000134326|Q5EBM0-4|CMPK2;ENSG00000134326|ENST00000256722|CMPK2	nc|ENSG00000134326|Q5EBM0-2|CMPK2	nc|ENSG00000134326|Q5EBM0-2|CMPK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.235595703125	2	485.235439	968.456324	-0.36622	-0.0001777	0.5617	0.00027256	0.19548	9.4854E-05	485.23568024517607	39.978	0.68074	39.978	39.661	40.341	0					45	23	3	0	0	0	0.2546	1	7322	7322		12.241	5.5175	1	113390			1332	2662	879	888	1917	1917					-0.029165838672497557
DADAPDPRL	9	Unmodified	_DADAPDPRL_					0	0	0		nc|ENSG00000134326|Q5EBM0-2|CMPK2;nc|ENSG00000134326|Q5EBM0-3|CMPK2;nc|ENSG00000134326|Q5EBM0-4|CMPK2;ENSG00000134326|ENST00000256722|CMPK2	nc|ENSG00000134326|Q5EBM0-2|CMPK2	nc|ENSG00000134326|Q5EBM0-2|CMPK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2353210449219	2	485.235439	968.456324	-0.23287	-0.000113	0.4064	0.0001972	0.17353	8.4204E-05	485.23557263975255	39.923	0.58032	40.011	39.634	40.214	0.088562					43	21	3	0	0	0	0.10543	1	7151	7151		31.268	13.122	1	91413			1333	2662	879	888	1918	1918					-0.029165838672497557
DADARAVAL	9	Unmodified	_DADARAVAL_					0	0	0		ENST00000563741.5_1_16:1828298-1832574:-|nuORF;ENST00000564709.5_1_16:1828298-1831862:-|nuORF;ENST00000565550.1_1_16:1828298-1832508:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3	ENST00000563741.5_1_16:1828298-1832574:-|nuORF	ENST00000563741.5_1_16:1828298-1832574:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.2401123046875	2	451.240524	900.466495	-0.18007	-8.1255E-05	-0.24402	-0.00011011	-0.42409	-0.00019137	451.24026097548216	40.686	0.51175	40.686	40.456	40.967	0					31	17	3	0	0	0	0.22083	1	7481	7481		16.149	2.2431	1	98277			1334	3810	880	889	1919	1919					0.012280238579933211
DADDAVYEL	9	Unmodified	_DADDAVYEL_					0	0	0		nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4;SRSF6|p.R46L|1|1.0|ENSG00000124193|chr20:43458390-43458390|G/T|missense_variant;ENST00000556436.1_1_14:70234873-70235392:+|nuORF;ENST00000605204.1_1_1:29486580-29492463:-|nuORF;nc|ENSG00000100650|Q13243-2|SRSF5;ENST00000554465.5_1_14:70234873-70235638:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5	nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000100650|Q13243-3|SRSF5	nc|ENSG00000124193|Q13247-2|SRSF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2212219238281	2	505.719287	1009.42402	0.53015	0.00026811	-0.57912	-0.00029287	-0.048967	-2.4764E-05	505.71887080418264	67.101	0.52848	67.101	66.9	67.428	0					24	19	2	0	0	0	0.24021	1	15529	15529		13.906	1.6654	1	188760			1335	7494;1214	881	890	1920	1920					-0.08031416060907759
DADEEKASL	9	Unmodified	_DADEEKASL_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2245178222656	2	489.224736	976.43492	-0.21713	-0.00010623	0.2776	0.00013581	0.060471	2.9584E-05	489.2246069909641	29.797	0.62911	29.797	29.488	30.117	0					65	29	3	0	0	0	0.024248	2	4264	4224;4264		55.235	15.285	1	104230			1336	2496	882	891	1921;1922	1922					-0.05424013686615581
DADEEKASL	9	Unmodified	_DADEEKASL_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2245178222656	2	489.224736	976.43492	-0.19867	-9.7193E-05	0.10533	5.1528E-05	-0.093341	-4.5665E-05	489.22470197450565	29.689	0.45113	29.766	29.611	30.062	0.076338					47	26	2	0	0	0	0.02143	2	4108	4067;4108		57.249	22.847	1	81225			1337	2496	882	891	1923;1924	1924					-0.05424013686615581
DADLREQAL	9	Unmodified	_DADLREQAL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7617797851562	2	515.76182	1029.50909	-0.39723	-0.00020488	0.018086	9.328E-06	-0.37915	-0.00019555	515.7619428394185	42.293	1.4106	42.293	42.057	43.467	0					127	48	5	0	0	0	4.1025E-13	3	7994	7951;7994;8041		189.73	93.365	1	3716900			1338	5252	883	892	1925;1926;1927	1926					-0.00448625804438052
DADLREQAL	9	Unmodified	_DADLREQAL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7617797851562	2	515.76182	1029.50909	-0.24128	-0.00012444	0.098927	5.1023E-05	-0.14235	-7.3419E-05	515.7619282163172	42.19	1.1623	42.279	42.048	43.21	0.089764					113	44	5	0	0	0	1.2994E-17	3	7834	7789;7834;7877		203.64	107.27	1	2971600			1339	5252	883	892	1928;1929;1930	1929					-0.00448625804438052
DADLVVFLS	9	Unmodified	_DADLVVFLS_					0	0	0		ENSG00000111331|ENST00000228928|OAS3;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	ENSG00000111331|ENST00000228928|OAS3;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7605285644531	2	489.760758	977.506963	0.077491	3.7952E-05	-1.6755	-0.00082058	-1.598	-0.00078263	489.75980862897467	89.605	0.37254	89.605	89.416	89.788	0					22	13	2	0	0	0	0.24021	1	22386	22386		13.906	3.0821	1	92198			1340	1701;1028	884	893	1931	1931					0.01730945457757116
DADPILISL	9	Unmodified	_DADPILISL_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7687072753906	2	478.768583	955.522613	-0.098145	-4.6989E-05	0.2891	0.00013841	0.19096	9.1424E-05	478.76863410673536	89.552	0.46188	89.585	89.385	89.846	0.032257					36	17	3	0	0	0	0.15403	1	22194	22194		34.402	5.3201	1	302650			1341	4508	885	894	1932	1932					0.04307231974826209
DAEHGAWAL	9	Unmodified	_DAEHGAWAL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2248840332031	2	485.224874	968.435195	0.3476	0.00016866	-0.27093	-0.00013146	0.076672	3.7203E-05	485.2246962128615	54.316	0.61089	54.316	53.841	54.451	0					23	21	2	0	0	0	0.25979	1	11604	11604		11.64	0.81637	1	79253			1342	3661	886	895	1933	1933					-0.050285491760973855
DAEHGAWAL	9	Unmodified	_DAEHGAWAL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	485.224874	968.435195	0.29387	0.00014259	-0.28549	-0.00013853	0.0083779	4.0651E-06	485.224774719595	54.226	0.19453	54.291	54.179	54.373	0.065128	-0.012248	-4.7777E-06	NaN	11.64	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63042			1343	3661	886	895							-0.050285491760973855
DAEPFLVYGIF	11	Unmodified	_DAEPFLVYGIF_					0	0	0		tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.5399169921875	3	424.216657	1269.62814	0.29431	0.00012485	-0.14847	-6.2985E-05	0.14584	6.1869E-05	424.2166116712176	35.505	2.4387	35.505	34.337	36.776	0					172	92	2	0	0	0	0.31092	1	5739	5739		0.50596	0	1	54804			1344	13679	887	896	1934	1934					0.004111481004201778
DAFAYVQER	9	Unmodified	_DAFAYVQER_					0	0	0		ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.76416015625	2	549.764363	1097.51417	0.36818	0.00020241	0.61928	0.00034046	0.98746	0.00054287	549.764177424759	48.086	0.48347	48.086	47.941	48.424	0					27	16	3	0	0	0	0.19713	1	9755	9755		28.234	14.328	1	104490			1345	5356	888	897	1935	1935					-0.030683219418278895
DAFAYVQER	9	Unmodified	_DAFAYVQER_					0	0	0		ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7640991210938	2	549.764363	1097.51417	0.58879	0.0003237	0.18073	9.9361E-05	0.76953	0.00042306	549.7642696774747	47.992	0.4857	48.072	47.871	48.357	0.080029					29	17	3	0	0	0	0.16146	1	9579	9579		35.612	24.498	1	91512			1346	5356	888	897	1936	1936					-0.030683219418278895
DAFKDFVV	8	Unmodified	_DAFKDFVV_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7422180175781	2	470.742368	939.470183	0.44675	0.0002103	-0.76	-0.00035776	-0.31325	-0.00014746	470.74191989091514	65.129	0.75881	65.129	64.945	65.704	0					61	27	4	0	0	0	0.3347	1	14920	14920		32.786	17.947	1	541090			1347	571	889	898	1937	1937					-0.001973063681475651
DAFKDFVV	8	Unmodified	_DAFKDFVV_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7421569824219	2	470.742368	939.470183	0.1932	9.0949E-05	-0.2958	-0.00013925	-0.1026	-4.8296E-05	470.74217105789677	65.164	0.80168	65.233	64.959	65.761	0.068916					68	31	3	0	0	0	0.32361	3	14797	14746;14797;14849		32.786	16.939	1	530900			1348	571	889	898	1938;1939;1940	1939					-0.001973063681475651
DAGIIFVMH	9	Unmodified	_DAGIIFVMH_					0	0	0		ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2419128417969	2	501.757495	1001.50044	0.19211	9.6392E-05	1.862	0.00093429	2.0541	0.0010307	502.25994012563547	38.836	0.5952	38.836	38.567	39.162	0					49	22	3	0	0	0	0.25504	1	6918	6918		4.756	1.1595	1	46505			1349	59	890	899	1941	1941					-0.0002527097459505967
DAGREYSL	8	Unmodified	_DAGREYSL_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.716796875	2	455.716882	909.41921	0.4332	0.00019742	-0.49568	-0.00022589	-0.062476	-2.8472E-05	455.7165969166431	37.979	1.1407	37.979	37.729	38.87	0					85	40	4	0	0	0	0.065403	2	6691	6649;6691		60.074	10.141	1	382780			1350	2867	891	900	1942;1943	1943					-0.03912255412990362
DAGREYSL	8	Unmodified	_DAGREYSL_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.716796875	2	455.716882	909.41921	0.2345	0.00010686	-0.20724	-9.4441E-05	0.02726	1.2423E-05	455.7167153105324	37.885	0.87714	37.97	37.684	38.561	0.08448					64	31	3	0	0	0	0.049934	2	6549	6500;6549		62.573	10.304	1	310400			1351	2867	891	900	1944;1945	1945					-0.03912255412990362
DAHARCPGSGD	11	Unmodified	_DAHARCPGSGD_					0	0	0		ENST00000433972.1_1_3:9885183-9885729:-|nuORF	ENST00000433972.1_1_3:9885183-9885729:-|nuORF	ENST00000433972.1_1_3:9885183-9885729:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2239990234375	2	543.225079	1084.43561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.995	1	19.085	18.585	19.585	0.089705								0	0	0	0.33873	1	1172	1172		1.1933	0.50296	1				1352	6498	892	901	1946	1946					-0.10323497518538716
DAHPETIVL	9	Unmodified	_DAHPETIVL_					0	0	0		SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion;nc|ENSG00000100605|Q13572-2|ITPK1;ENSG00000100605|ENST00000267615|ITPK1	SYNE2-ITPK1|2|fusion	SYNE2-ITPK1|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7640380859375	2	497.763832	993.513111	0.51088	0.0002543	-0.2011	-0.0001001	0.30978	0.0001542	497.76371590046506	53.63	0.65773	53.696	53.482	54.14	0.06543					66	27	4	0	0	0	0.12809	1	11283	11283		26.884	2.2098	1	808100			1353	13422	893	902	1947	1947					0.01609463689283075
DAIARDAEL	9	Unmodified	_DAIARDAEL_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.93536376953125	2	487.251089	972.487624	-0.65394	-0.00031864	-0.30622	-0.00014921	-0.96017	-0.00046784	487.2508791872642	42.239	0.34816	42.239	42.106	42.454	0					25	11	3	0	0	0	0.24025	1	7979	7979		16.566	16.566	1	170560			1354	3536	894	903	1948	1948					0.0002798916684696451
DAIARDAEL	9	Unmodified	_DAIARDAEL_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.9354553222656	2	487.251089	972.487624	-0.4671	-0.0002276	0.015197	7.4049E-06	-0.45191	-0.00022019	487.25113074488087	42.17	0.40165	42.26	42.119	42.52	0.089764					27	14	2	0	0	0	0.22821	1	7827	7827		19.362	1.2156	1	146370			1355	3536	894	903	1949	1949					0.0002798916684696451
DAIEKAVSR	9	Unmodified	_DAIEKAVSR_					0	0	0		nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7745056152344	2	494.774731	987.534909	-0.020977	-1.0379E-05	-0.50785	-0.00025127	-0.52883	-0.00026165	494.7744320623519	27.044	0.59546	27.044	26.834	27.429	0					98	38	4	0	0	0	0.05233	2	3454	3423;3454		42.835	14.341	1	185400			1356	7509	895	904	1950;1951	1951					0.040642684378553895
DAIEKAVSR	9	Unmodified	_DAIEKAVSR_					0	0	0		nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7746276855469	2	494.774731	987.534909	0.0065711	3.2512E-06	-0.33795	-0.00016721	-0.33137	-0.00016396	494.7745480958794	26.913	0.52212	27	26.846	27.368	0.086699					77	37	3	0	0	0	0.09187	1	3274	3274		34.222	11.485	1	151830			1357	7509	895	904	1952	1952					0.040642684378553895
DAIKQNVQH	9	Unmodified	_DAIKQNVQH_					0	0	0			REV__ENSG00000184949|ENST00000535113|FAM227A	REV__ENSG00000184949|ENST00000535113|FAM227A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7776489257812	2	526.777805	1051.54106	-0.23794	-0.00012534	0.23509	0.00012384	-0.0028556	-1.5043E-06	526.7779557688996	24.758	2.2137	24.758	23.461	25.675	0					347	186	2	0	0	0	0.32112	1	2619	2619		3.9444	0	1	49592	+		1358	10647	896	905	1953	1953					0.017347866693853575
DAIKQYMHFR	10	Unmodified	_DAIKQYMHFR_					0	0	0		ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.8895568847656	3	436.888768	1307.64448	0.068969	3.0132E-05	1.5376	0.00067177	1.6066	0.0007019	436.889270439731	33.132	0.70992	33.132	32.781	33.491	0					45	27	3	0	0	0	0.43061	1	5227	5227		8.4443	1.8209	1	68589			1359	5370	897	906	1954	1954					0.002959507855166521
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7457275390625	2	479.745639	957.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.064	1	68.064	67.564	68.564	0								0	0	0	0.0040281	1	15819	15819		76.825	22.992	1				1360	3774	898	907	1955	1955					-0.00371413207437854
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7455139160156	2	479.745639	957.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.208	1	68.208	67.708	68.708	0								0	0	0	2.1651E-08	1	15862	15862		110.55	34.792	1				1361	3774	898	907	1956	1956					-0.00371413207437854
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7461853027344	2	479.745639	957.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.383	1	68.383	67.883	68.883	0								0	0	0	0.24291	1	15915	15915		10.8	1.4521	1				1362	3774	898	907	1957	1957					-0.00371413207437854
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7458190917969	2	479.745639	957.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.03	1	68.094	67.594	68.594	0.063507								0	0	0	0.0018677	1	15655	15655		83.429	31.799	1				1363	3774	898	907	1958	1958					-0.00371413207437854
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7456970214844	2	479.745639	957.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.184	1	68.247	67.747	68.747	0.063507								0	0	0	0.05392	1	15700	15700		47.594	16.326	1				1364	3774	898	907	1959	1959					-0.00371413207437854
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.74554443359375	2	479.745639	957.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.344	1	68.408	67.908	68.908	0.063507								0	0	0	0.25573	1	15749	15749		8.1555	0.24537	1				1365	3774	898	907	1960	1960					-0.00371413207437854
DAINTEFKNTR	11	Unmodified	_DAINTEFKNTR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5238342285156	3	436.889603	1307.64698	0.20129	8.7942E-05	-0.66493	-0.0002905	-0.46364	-0.00020256	436.8892526908614	34.704	0.75433	34.704	34.505	35.259	0					57	27	3	0	0	0	0.30302	1	5696	5696		22.109	15.485	1	103890			1366	494	899	908	1961	1961					0.005460777241751202
DAINTEFKNTR	11	Unmodified	_DAINTEFKNTR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.8894348144531	3	436.889603	1307.64698	-0.16164	-7.0617E-05	0.017809	7.7806E-06	-0.14383	-6.2837E-05	436.88942471531885	33.094	0.64447	33.168	32.803	33.447	0.074322					44	26	3	0	0	0	0.40205	1	5088	5088		3.8459	0.52627	1	43749			1367	494	899	908	1962	1962					0.005460777241751202
DAINTEFKNTR	11	Unmodified	_DAINTEFKNTR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5240173339844	3	436.889603	1307.64698	-0.044895	-1.9614E-05	-0.16282	-7.1133E-05	-0.20771	-9.0748E-05	436.8894736782394	34.635	0.622	34.711	34.518	35.14	0.076248					55	27	3	0	0	0	0.31028	1	5569	5569		10.016	5.8996	1	91862			1368	494	899	908	1963	1963					0.005460777241751202
DAIRDAEIL	9	Unmodified	_DAIRDAEIL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.27471923828125	2	508.274564	1014.53457	0.29897	0.00015196	0.072254	3.6725E-05	0.37122	0.00018868	508.274473731384	56.013	0.94269	56.013	55.782	56.725	0					80	34	5	0	0	0	0.0085356	3	12132	12132;12176;12226		71.708	31.758	1	2132200			1369	2903	900	909	1964;1965;1966	1964					0.027888487179893673
DAIRDAEIL	9	Unmodified	_DAIRDAEIL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.274658203125	2	508.274564	1014.53457	0.22646	0.0001151	0.10965	5.5731E-05	0.33611	0.00017084	508.27452647333513	55.956	0.81165	56.021	55.73	56.542	0.065182					75	30	4	0	0	0	0.0085356	2	11974	11974;12019		71.708	31.758	1	1760400			1370	2903	900	909	1967;1968	1967					0.027888487179893673
DAIYEVVSL	9	Unmodified	_DAIYEVVSL_					0	0	0		nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.76580810546875	2	504.76604	1007.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.182	1	83.182	82.682	83.682	0								0	0	0	0.096229	1	20432	20432		34.402	10.381	1				1371	3482	901	910	1969	1969					0.014069281122033317
DAIYEVVSL	9	Unmodified	_DAIYEVVSL_					0	0	0		nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.766357421875	2	504.76604	1007.51753	0.2267	0.00011443	0.7915	0.00039952	1.0182	0.00051395	504.76597847028074	83.135	0.51004	83.157	82.904	83.414	0.021744					28	13	3	0	0	0	0.091044	1	20253	20253		34.402	10.381	1	129810			1372	3482	901	910	1970	1970					0.014069281122033317
DALPEYSTF	9	Unmodified	_DALPEYSTF_					0	0	0		ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7413940429688	2	521.740022	1041.46549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.773	1	69.773	69.273	70.273	0								0	0	0	0.19239	1	16336	16336		19.257	4.4187	1				1373	1901	902	911	1971	1971					-0.05358235301582681
DALQHSDRL	9	Unmodified	_DALQHSDRL_					0	0	0		KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7677612304688	2	527.767437	1053.52032	0.048178	2.5427E-05	-0.24744	-0.00013059	-0.19926	-0.00010516	527.7672698701886	20.924	0.4243	21.024	20.851	21.275	0.099499					105	47	3	0	0	0	0.33849	1	1597	1597		1.6526	1.6526	1	59272			1374	7373	903	912	1972	1972					-0.004298037102898888
DANGNSFATR	10	Unmodified	_DANGNSFATR_					0	0	0		ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1	ENST00000470671.1_1_X:71475533-71493153:-|nuORF	ENST00000470671.1_1_X:71475533-71493153:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7410888671875	2	526.741419	1051.46829	-0.20925	-0.00011022	-0.20923	-0.00011021	-0.41848	-0.00022043	526.741173026649	25.919	0.40662	25.919	25.771	26.177	0					56	31	2	0	0	0	0.40917	1	3111	3111		10.899	8.0097	1	41482			1375	2440	904	913	1973	1973					-0.055389671240618554
DANGNSFATR	10	Unmodified	_DANGNSFATR_					0	0	0		ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1	ENST00000470671.1_1_X:71475533-71493153:-|nuORF	ENST00000470671.1_1_X:71475533-71493153:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7413330078125	2	526.741419	1051.46829	-0.14577	-7.6781E-05	0.253	0.00013326	0.10723	5.6484E-05	526.7413991112714	25.719	0.40402	25.81	25.664	26.068	0.091507					53	33	2	0	0	0	0.45313	1	2915	2915		4.1895	1.8868	1	35013			1376	2440	904	913	1974	1974					-0.055389671240618554
DANVPQYVI	9	Unmodified	_DANVPQYVI_					0	0	0			REV__nc|ENSG00000001167|P23511-2|NFYA	REV__nc|ENSG00000001167|P23511-2|NFYA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.76397705078125	2	509.763832	1017.51311	0.59555	0.00030359	0.17418	8.8793E-05	0.76973	0.00039238	509.763839445199	54.348	0.98724	54.348	54.098	55.085	0					72	41	3	0	0	0	0.24021	2	11641	11641;11683		13.906	2.2658	1	821570	+		1377	7918	905	914	1975;1976	1975					0.0050546368928507945
DAPLRDPAL	9	Unmodified	_DAPLRDPAL_					0	0	0		ENST00000586443.1_1_17:42429890-42430163:+|nuORF;nc|ENSG00000030582|P28799-3|GRN;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000586443.1_1_17:42429890-42430163:+|nuORF	ENST00000586443.1_1_17:42429890-42430163:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.2638244628906	2	484.263999	966.513445	0.084836	4.1083E-05	-0.18991	-9.1968E-05	-0.10508	-5.0885E-05	484.2638370804732	47.091	0.49362	47.091	46.878	47.372	0					26	16	2	0	0	0	0.22083	1	9470	9470		16.149	4.6544	1	83033			1378	502	906	915	1977	1977					0.028848834091377284
DAPLRDPAL	9	Unmodified	_DAPLRDPAL_					0	0	0		ENST00000586443.1_1_17:42429890-42430163:+|nuORF;nc|ENSG00000030582|P28799-3|GRN;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000586443.1_1_17:42429890-42430163:+|nuORF	ENST00000586443.1_1_17:42429890-42430163:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2638854980469	2	484.263999	966.513445	0.059145	2.8642E-05	0.29065	0.00014075	0.3498	0.00016939	484.2641179003606	47.017	0.46185	47.1	46.835	47.297	0.083096					26	17	2	0	0	0	0.22083	1	9299	9299		16.149	4.6544	1	70587			1379	502	906	915	1978	1978					0.028848834091377284
DAPLRDPAL	9	Unmodified	_DAPLRDPAL_					0	0	0		ENST00000586443.1_1_17:42429890-42430163:+|nuORF;nc|ENSG00000030582|P28799-3|GRN;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000586443.1_1_17:42429890-42430163:+|nuORF	ENST00000586443.1_1_17:42429890-42430163:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.263999	966.513445	0.084836	4.1083E-05	-0.18991	-9.1968E-05	-0.10508	-5.0885E-05	484.2638370804732	47.091	0.49362	47.091	46.878	47.372	0	-0.0044708	-0.00031292	NaN	16.149	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83033			1380	502	906	915							0.028848834091377284
DAPLRDPAL	9	Unmodified	_DAPLRDPAL_					0	0	0		ENST00000586443.1_1_17:42429890-42430163:+|nuORF;nc|ENSG00000030582|P28799-3|GRN;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN	ENST00000586443.1_1_17:42429890-42430163:+|nuORF	ENST00000586443.1_1_17:42429890-42430163:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	484.263999	966.513445	0.059145	2.8642E-05	0.29065	0.00014075	0.3498	0.00016939	484.2641179003606	47.017	0.46185	47.1	46.835	47.297	0.083096	0.0044708	0.00015252	NaN	16.149	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70587			1381	502	906	915							0.028848834091377284
DAQADEAVL	9	Unmodified	_DAQADEAVL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000448361.5_2_10:22605382-22607041:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.221923828125	2	466.221997	930.429441	0.14954	6.972E-05	-0.1982	-9.2406E-05	-0.04866	-2.2686E-05	466.2218079453239	51.189	0.67598	51.189	50.886	51.562	0					50	22	3	0	0	0	0.048027	2	10644	10644;10697		43.772	5.82	1	377890			1382	3366	907	916	1979;1980	1979					-0.03855692478430228
DAQADEAVL	9	Unmodified	_DAQADEAVL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000448361.5_2_10:22605382-22607041:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.22198486328125	2	466.221997	930.429441	0.070009	3.264E-05	0.0085298	3.9768E-06	0.078539	3.6616E-05	466.22185156115506	51.068	0.64804	51.138	50.883	51.531	0.069878					57	25	3	0	0	0	0.034936	2	10494	10494;10539		47.594	9.6204	1	351450			1383	3366	907	916	1981;1982	1981					-0.03855692478430228
DASAEVERL	9	Unmodified	_DASAEVERL_					0	0	0		nc|ENSG00000130303|Q10589-2|BST2;ENSG00000130303|ENST00000252593|BST2	nc|ENSG00000130303|Q10589-2|BST2	nc|ENSG00000130303|Q10589-2|BST2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2481689453125	2	495.248546	988.482539	-0.23922	-0.00011847	0.024196	1.1983E-05	-0.21502	-0.00010649	495.2484358696821	42.52	0.61068	42.52	42.305	42.916	0					58	20	4	0	0	0	0.0016755	2	8044	8044;8093		117.76	68.206	1	447900			1384	2463	908	917	1983;1984	1983					-0.012163146957504978
DASAEVERL	9	Unmodified	_DASAEVERL_					0	0	0		nc|ENSG00000130303|Q10589-2|BST2;ENSG00000130303|ENST00000252593|BST2	nc|ENSG00000130303|Q10589-2|BST2	nc|ENSG00000130303|Q10589-2|BST2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2483825683594	2	495.248546	988.482539	-0.11182	-5.5377E-05	0.05801	2.8729E-05	-0.053806	-2.6648E-05	495.2485224803464	42.441	0.54551	42.531	42.342	42.887	0.089764					48	19	3	0	0	0	0.0034159	3	7928	7879;7928;7978		107.1	59.351	1	355820			1385	2463	908	917	1985;1986;1987	1986					-0.012163146957504978
DASGPDPQL	9	Unmodified	_DASGPDPQL_					0	0	0		ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.208740234375	2	450.208889	898.403226	0.31684	0.00014264	-0.33956	-0.00015287	-0.022716	-1.0227E-05	450.20863879572215	46.636	0.77988	46.636	46.42	47.2	0					90	40	3	0	0	0	1.7686E-17	4	9304	9266;9304;9347;9402		199.75	57.67	1	1758600			1386	916	909	918	1988;1989;1990;1991	1989					-0.050039616499134354
DASGPDPQL	9	Unmodified	_DASGPDPQL_					0	0	0		ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.2088317871094	2	450.208889	898.403226	0.069849	3.1447E-05	-0.087489	-3.9388E-05	-0.01764	-7.9416E-06	450.20873064438194	46.565	0.66859	46.648	46.391	47.06	0.083096					89	38	3	0	0	0	1.3975E-05	3	9148	9111;9148;9194		145.13	32.406	1	1508600			1387	916	909	918	1992;1993;1994	1993					-0.050039616499134354
DASSLEYLF	9	Unmodified	_DASSLEYLF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.748291015625	2	522.747847	1043.48114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.186	1	90.22	89.72	90.72	0.034065								0	0	0	0.14119	1	22403	22403		26.884	9.9414	1				1388	3826	910	919	1995	1995					-0.0388594878454569
DAVGTAVSSR	10	Unmodified	_DAVGTAVSSR_					0	0	0		ENST00000020945.3_2_8:49832997-49833910:-|nuORF	ENST00000020945.3_2_8:49832997-49833910:-|nuORF	ENST00000020945.3_2_8:49832997-49833910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.74847412109375	2	481.748713	961.482873	-0.40754	-0.00019633	0.26533	0.00012782	-0.14221	-6.8512E-05	481.74875510255856	28.32	0.38824	28.32	28.14	28.529	0					32	20	2	0	0	0	0.16475	1	3790	3790		37.771	17.357	1	58568			1389	5777	911	920	1996	1996					0.0005910502410415575
DAVGTAVSSR	10	Unmodified	_DAVGTAVSSR_					0	0	0		ENST00000020945.3_2_8:49832997-49833910:-|nuORF	ENST00000020945.3_2_8:49832997-49833910:-|nuORF	ENST00000020945.3_2_8:49832997-49833910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7484130859375	2	481.748713	961.482873	-0.38573	-0.00018582	0.22647	0.0001091	-0.15926	-7.6722E-05	481.74876899312403	28.228	0.33492	28.31	28.157	28.492	0.082132					28	20	2	0	0	0	0.3186	2	3629	3629;3635		20.581	8.9569	1	55303			1390	5777	911	920	1997;1998	1997					0.0005910502410415575
DAVQREYQL	9	Unmodified	_DAVQREYQL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2816772460938	2	561.28292	1120.55129	-0.067537	-3.7907E-05	-1.3076	-0.00073391	-1.3751	-0.00077182	561.2818328152157	43.517	1.2609	43.517	42.886	44.147	0					87	40	4	0	0	0	0.018907	3	8348	8337;8348;8391		59.052	30.558	1	509910			1391	898	912	921	1999;2000;2001	2000					-0.004166503960504997
DAVQREYQL	9	Unmodified	_DAVQREYQL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.281982421875	2	561.28292	1120.55129	0.075737	4.251E-05	-1.2939	-0.00072622	-1.2181	-0.00068371	561.2817687372473	43.434	0.81036	43.523	43.091	43.901	0.088921					67	28	3	0	0	0	0.018907	2	8198	8175;8198		59.052	29.971	1	379240			1392	898	912	921	2002;2003	2003					-0.004166503960504997
DAYGSELVER	10	Unmodified	_DAYGSELVER_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7736206054688	2	569.772385	1137.53022	-0.0467	-2.6608E-05	1.6443	0.00093689	1.5976	0.00091029	569.7734994817646	43.415	0.48864	43.504	43.329	43.818	0.088924					27	17	2	0	0	0	0.45313	1	8236	8236		4.1895	0.59301	1	73768			1393	3472	913	922	2004	2004					-0.03304660495587086
DCCIPELL	8	Unmodified	_DCCIPELL_					0	0	0			REV__ENSG00000212900|ENST00000391587|KRTAP3-2	REV__ENSG00000212900|ENST00000391587|KRTAP3-2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2090759277344	2	453.208989	904.403426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.44	1	101.49	100.99	101.99	0.042656								0	0	0	0.38822	1	25830	25830		2.5775	0	1		+		1394	10989	914	923	2005	2005					-0.052600012459038226
DCCRTWNW	8	Unmodified	_DCCRTWNW_					0	0	0		ENST00000486279.1_1_10:28283991-28284645:-|nuORF	ENST00000486279.1_1_10:28283991-28284645:-|nuORF	ENST00000486279.1_1_10:28283991-28284645:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2590942382812	2	542.210386	1082.40622	0.22986	0.00012463	1.9178	0.0010398	2.1476	0.0011645	542.2112274832497	53.107	0.33273	53.107	52.921	53.254	0					18	12	2	0	0	0	0.3576	1	11223	11223		5.7604	1.4312	1	100450			1395	6785	915	924	2006	2006					-0.13168733068391703
DCCRTWNW	8	Unmodified	_DCCRTWNW_					0	0	0		ENST00000486279.1_1_10:28283991-28284645:-|nuORF	ENST00000486279.1_1_10:28283991-28284645:-|nuORF	ENST00000486279.1_1_10:28283991-28284645:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.210386	1082.40622	0.45656	0.00024755	1.5793	0.00085634	2.0359	0.0011039	542.2109630786646	53.057	0.29565	53.123	52.974	53.27	0.065426	0.0078558	-0.00016435	NaN	5.7604	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75270			1396	6785	915	924							-0.13168733068391703
DCDSCSSLI	9	Unmodified	_DCDSCSSLI_					0	0	0			REV__ENSG00000131788|ENST00000393045|PIAS3	REV__ENSG00000131788|ENST00000393045|PIAS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.3532409667969	2	471.680793	941.347033	-0.37365	-0.00017624	-2.0608	-0.00097204	-2.4344	-0.0011483	471.6797614353281	44.586	0.55501	44.586	44.387	44.942	0					28	19	2	0	0	0	0.25579	1	8689	8689		4.3292	1.7518	1	71642	+		1397	9096	916	925	2007	2007					-0.12598673873219468
DCDSCSSLI	9	Unmodified	_DCDSCSSLI_					0	0	0			REV__ENSG00000131788|ENST00000393045|PIAS3	REV__ENSG00000131788|ENST00000393045|PIAS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.35382080078125	2	471.680793	941.347033	-0.24999	-0.00011792	-1.9597	-0.00092436	-2.2097	-0.0010423	471.67987611107594	44.546	0.48637	44.633	44.419	44.906	0.087543					26	17	2	0	0	0	0.25579	1	8525	8525		4.3292	0	1	75779	+		1398	9096	916	925	2008	2008					-0.12598673873219468
DCDTDALITF	10	Unmodified	_DCDTDALITF_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.26806640625	2	557.242072	1112.46959	0.56409	0.00031434	-0.29447	-0.00016409	0.26962	0.00015024	557.7434588908837	62.853	0.13087	62.853	62.752	62.883	0					5	4	2	0	0	0	0.31712	1	14215	14215		6.7232	0	1	89164	+		1399	10561	917	926	2009	2009					-0.08214513870166229
DCEMYKHRM	9	Unmodified	_DCEMYKHRM_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.0397338867188	2	606.751561	1211.48857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.421	1	53.487	52.987	53.987	0.06543								0	0	0	0.2927	1	11218	11218		0.52476	0.066424	1				1400	5359	918	927	2010	2010					-0.10871579051763547
DCLYLNVW	8	Unmodified	_DCLYLNVW_					0	0	0		ENSG00000114200|ENST00000264381|BCHE;BCHE|p.E118K|1|0.27|ENSG00000114200|chr3:165830682-165830682|C/T|missense_variant;ENST00000442452.1_1_7:100490234-100491508:-|nuORF;nc|ENSG00000087085|P22303-3|ACHE;nc|ENSG00000087085|P22303-4|ACHE;ENSG00000087085|ENST00000241069|ACHE;nc|ENSG00000087085|P22303-2|ACHE	ENSG00000114200|ENST00000264381|BCHE	ENSG00000114200|ENST00000264381|BCHE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2410888671875	2	513.241678	1024.4688	-0.080744	-4.1441E-05	-0.91684	-0.00047056	-0.99759	-0.000512	513.2412754892783	26.88	0.29027	26.967	26.861	27.152	0.086699					42	20	3	0	0	0	0.54097	1	3290	3290		0.69038	0.088878	1	45262			1401	1830	919	928	2011	2011					-0.04245263728569171
DCRQVDKEI	9	Unmodified	_DCRQVDKEI_					0	0	0			REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2672729492188	2	553.268955	1104.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.439	1	30.439	29.939	30.939	0								0	0	0	0.26267	1	4428	4428		6.7232	0	1		+		1402	10104	920	929	2012	2012					-0.02472296647783878
DCRTAFMA	8	Unmodified	_DCRTAFMA_					0	0	0			REV__BICD2-IPPK|1|fusion	REV__BICD2-IPPK|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2643737792969	2	457.69658	913.378608	0.30157	0.00013803	-3.1571	-0.001445	-2.8556	-0.001307	457.69502171147667	74.713	0.25256	74.761	74.593	74.846	0.048546					16	8	2	0	0	0	0.3576	1	17687	17687		2.8892	0.31174	1	78042	+		1403	7739	921	930	2013	2013					-0.08154636328629294
DCTRLCPAHPE	11	Unmodified	_DCTRLCPAHPE_					0	0	0		ENST00000282908.9_1_4:5469733-5500883:+|nuORF	ENST00000282908.9_1_4:5469733-5500883:+|nuORF	ENST00000282908.9_1_4:5469733-5500883:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2722778320312	2	621.273715	1240.53288	0.058329	3.6238E-05	-1.5729	-0.00097721	-1.5146	-0.00094097	621.2726673886169	62.796	0.39368	62.796	62.631	63.025	0					28	13	3	0	0	0	0.30991	1	14211	14211		10.8	1.4164	1	183320			1404	5934	922	931	2014	2014					-0.07776851633911974
DCYGAVVW	8	Unmodified	_DCYGAVVW_					0	0	0		nc|ENSG00000250878|A6NDL7|METTL21EP	nc|ENSG00000250878|A6NDL7|METTL21EP	nc|ENSG00000250878|A6NDL7|METTL21EP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7162780761719	2	456.699646	911.384739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.283	1	58.283	57.783	58.783	0								0	0	0	0.38822	1	12834	12834		0.79363	0	1				1405	7614	923	932	2015	2015					-0.07449794825447498
DDDDDDDEDAA	11	Unmodified	_DDDDDDDEDAA_					0	0	0			REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF	REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1211242675781	3	404.121586	1209.34293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.742	1	86.769	86.269	87.269	0.027573								0	0	0	0.34083	1	21357	21357		0.45452	0.1855	1		+		1406	11875	924	933	2016	2016					-0.25336813352237186
DDDGELFASM	10	Unmodified	_DDDGELFASM_					0	0	0		nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP;ENST00000569146.1_1_16:81726864-81730296:+|nuORF;ENST00000565680.1_1_16:81725275-81734153:+|nuORF	nc|ENSG00000153815|Q8IY22-2|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.822265625	2	550.216054	1098.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.11	1	115.11	114.61	115.61	0								0	0	0	0.33984	1	29374	29374		0.40072	0.40072	1				1407	3531	925	934	2017	2017					-0.12771677283922145
DDDLLNLIHA	10	Unmodified	_DDDLLNLIHA_					0	0	0		nc|ENSG00000258628|A8MT19|RHPN2P1	nc|ENSG00000258628|A8MT19|RHPN2P1	nc|ENSG00000258628|A8MT19|RHPN2P1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.788330078125	2	569.790578	1137.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.586	1	22.688	22.188	23.188	0.10178								0	0	0	0.33984	1	2065	2065		0.40072	0.40072	1				1408	7622	926	935	2018	2018					0.0033221640117062634
DDDYQDEPG	9	Unmodified	_DDDYQDEPG_					0	0	0			REV__BCOR|p.D1627Y|1|0.21|ENSG00000183337|chrX:40053983-40053983|C/A|missense_variant	REV__BCOR|p.D1627Y|1|0.21|ENSG00000183337|chrX:40053983-40053983|C/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.1848754882812	2	527.185808	1052.35706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.502	1	22.502	22.002	23.002	0								0	0	0	0.2927	1	2150	2150		0.52476	0	1		+		1409	7737	927	936	2019	2019					-0.1670207134266093
DDEDGQDDSDD	11	Unmodified	_DDEDGQDDSDD_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.820556640625	2	613.184191	1224.35383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.874	1	39.963	39.463	40.463	0.088562								0	0	0	0.34136	1	7129	7129		0.26902	0.26902	1		+		1410	8937	928	937	2020	2020					-0.24937410977963737
DDEEQVPF	8	Unmodified	_DDEEQVPF_					0	0	0			REV__nc|ENSG00000138835|P49796-5|RGS3	REV__nc|ENSG00000138835|P49796-5|RGS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7060852050781	2	489.70618	977.397806	0.72827	0.00035664	-1.1215	-0.00054923	-0.39327	-0.00019259	489.7056008031962	81.539	0.55336	81.539	81.317	81.87	0					30	18	2	0	0	0	0.53345	1	19960	19960		5.7604	2.8712	1	220700	+		1411	9331	929	938	2021	2021					-0.0917968523235686
DDELLSRYF	9	Unmodified	_DDELLSRYF_					0	0	0			REV__nc|ENSG00000141736|P04626-5|ERBB2	REV__nc|ENSG00000141736|P04626-5|ERBB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2785034179688	2	579.277303	1156.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.543	1	54.543	54.043	55.043	0								0	0	0	0.25692	1	11697	11697		7.9102	1.5561	1		+		1412	9414	930	939	2022	2022					-0.03195472490187967
DDEWEFEN	8	Unmodified	_DDEWEFEN_					0	0	0			REV__ENST00000560458.5_1_15:59970098-59981480:-|nuORF	REV__ENST00000560458.5_1_15:59970098-59981480:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7269287109375	2	542.198719	1082.38288	-0.10225	-5.5439E-05	1.1527	0.00062498	1.0504	0.00056954	542.1992675967615	29.463	0.37082	29.463	29.32	29.691	0					28	20	2	0	0	0	0.3576	1	4117	4117		0.79363	0.19213	1	41892	+		1413	9365	931	940	2023	2023					-0.15501177100350105
DDLMPINL	8	Oxidation (M)	_DDLM(Oxidation (M))PINL_		DDLM(1)PINL		DDLM(42)PINL	0	0	1		ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7309265136719	2	473.731143	945.447733	0.26629	0.00012615	-0.20463	-9.694E-05	0.061662	2.9211E-05	473.73096163526753	70.214	1.4182	70.214	69.319	70.737	0					93	50	2	0	0	0	0.20402	1	16349	16349		42.095	6.0504	1	501910			1414	5742	932	941	2024	2024		323			-0.027172738280683006
DDMQHGFF	8	Unmodified	_DDMQHGFF_					0	0	0			REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF	REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.6961364746094	2	498.697635	995.380716	0.43514	0.000217	-2.8926	-0.0014425	-2.4575	-0.0012255	498.6960867152116	59.839	0.37169	59.839	59.719	60.091	0					22	13	2	0	0	0	0.53771	1	13325	13325		2.8892	0.82947	1	126170	+		1415	11390	933	942	2025	2025					-0.11715884319164616
DDMQHGFF	8	Unmodified	_DDMQHGFF_					0	0	0			REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF	REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	498.697635	995.380716	0.43514	0.000217	-2.8926	-0.0014425	-2.4575	-0.0012255	498.6960867152116	59.839	0.37169	59.839	59.719	60.091	0	-0.0017723	0.00012474	NaN	2.8892	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126170	+		1416	11390	933	942							-0.11715884319164616
DDMQHGFF	8	Unmodified	_DDMQHGFF_					0	0	0			REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF	REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.697635	995.380716	0.23544	0.00011741	-3.074	-0.001533	-2.8386	-0.0014156	498.69602091179075	59.77	0.35836	59.843	59.735	60.093	0.072338	0.0017723	-5.6192E-05	NaN	2.8892	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95858	+		1417	11390	933	942							-0.11715884319164616
DDNPFFKLEH	10	Unmodified	_DDNPFFKLEH_					0	0	0			REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.860595703125	2	631.296027	1260.5775	0.20499	0.00012941	3.3075	0.002088	3.5125	0.0022174	631.2980804140979	89.444	0.30176	89.476	89.301	89.603	0.032257					17	10	2	0	0	0	0.31821	1	22203	22203		1.1933	0	1	76405	+		1418	9248	934	943	2026	2026					-0.042363812245639565
DDNRRMDY	8	Unmodified	_DDNRRMDY_					0	0	0			REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7269287109375	2	542.727455	1083.44036	-0.10631	-5.7699E-05	-0.34773	-0.00018872	-0.45404	-0.00024642	542.7273490743281	29.379	0.30319	29.379	29.232	29.535	0					23	16	2	0	0	0	0.54081	1	4117	4117		0.79363	0	1	18720	+		1419	8590	935	944	2027	2027					-0.09802613375768487
DDPSFCCDTM	10	Unmodified	_DDPSFCCDTM_					0	0	0			REV__ENST00000511906.5_1_5:37379391-37721408:+|nuORF	REV__ENST00000511906.5_1_5:37379391-37721408:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2793579101562	2	567.182842	1132.35113	0.39394	0.00022344	-2.6868	-0.0015239	-2.2928	-0.0013005	567.1807697079277	64.193	0.086792	64.264	64.202	64.289	0.071014					4	2	2	0	0	0	0.31794	1	14500	14500		3.5965	1.5367	1	33285	+		1420	8245	936	945	2028	2028					-0.20974952441838468
DDPYYGPY	8	Unmodified	_DDPYYGPY_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.3891296386719	2	495.19799	988.381428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.614	1	12.614	12.114	13.114	0								0	0	0	0.38822	1	93	93		0.79363	0	1		+		1421	8791	937	946	2029	2029					-0.1132276639847305
DDQEVFVEVYN	11	Unmodified	_DDQEVFVEVYN_					0	0	0		nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS	nc|ENSG00000135677|P15586-2|GNS	nc|ENSG00000135677|P15586-2|GNS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8807678222656	3	452.869985	1355.58813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.464	1	83.464	82.964	83.964	0								0	0	0	0.34068	1	20518	20518		0.50596	0.09769	1				1422	2742	938	947	2030	2030					-0.07544443360802688
DDQYWLWS	8	Unmodified	_DDQYWLWS_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|214|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|214|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3088989257812	2	556.737814	1111.46108	0.30017	0.00016712	-0.72403	-0.0004031	-0.42386	-0.00023598	556.7373108121277	73.852	0.34721	73.852	73.63	73.977	0					14	11	2	0	0	0	0.3576	1	17514	17514		7.9102	0.62092	1	75072	+		1423	12720	939	948	2031	2031					-0.090196997244675
DDRELWPRKFF	11	Unmodified	_DDRELWPRKFF_					0	0	0		ENST00000472871.1_1_13:95120883-95131509:-|nuORF;ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT	ENST00000472871.1_1_13:95120883-95131509:-|nuORF	ENST00000472871.1_1_13:95120883-95131509:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.1080322265625	3	503.593009	1507.7572	0.29121	0.00014665	-0.15676	-7.8941E-05	0.13446	6.7711E-05	503.5929916859515	94.331	0.59032	94.369	94.101	94.691	0.038086					32	23	2	0	0	0	0.31096	1	23681	23681		1.4551	0	1	62493			1424	888	940	949	2032	2032					0.0236292278318615
DDSCTLAEL	9	Unmodified	_DDSCTLAEL_					0	0	0			REV__ENSG00000072657|ENST00000261180|TRHDE	REV__ENSG00000072657|ENST00000261180|TRHDE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7481384277344	2	483.707865	965.401177	-0.15937	-7.7087E-05	-0.46205	-0.0002235	-0.62142	-0.00030058	483.7076074863455	49.033	0.42153	49.11	49.034	49.456	0.076603					16	15	2	0	0	0	0.2446	1	9917	9917		11.64	0.81637	1	22155	+		1425	8169	941	950	2033	2033					-0.08290758450027624
DEAQSPAP	8	Unmodified	_DEAQSPAP_					0	0	0			REV__ENST00000430767.8_1_17:75212591-75212765:+|nuORF	REV__ENST00000430767.8_1_17:75212591-75212765:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.6824035644531	2	407.682507	813.350462	-0.31756	-0.00012946	0.2733	0.00011142	-0.044263	-1.8045E-05	407.68268021502314	27.961	1.3158	28.044	27.751	29.067	0.082132					193	81	5	0	0	0	0.4433	1	3512	3512		20.454	3.5113	1	1887200	+		1426	11848	942	951	2034	2034					-0.06367919712704406
DEASPQAP	8	Unmodified	_DEASPQAP_					0	0	0			REV__ENST00000437318.5_1_15:20645779-20651177:-|nuORF	REV__ENST00000437318.5_1_15:20645779-20651177:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.6824951171875	2	407.682507	813.350462	-0.31756	-0.00012946	0.2733	0.00011142	-0.044263	-1.8045E-05	407.68268021502314	27.961	1.3158	28.044	27.751	29.067	0.082132					193	81	5	0	0	0	0.37883	1	3640	3640		28.487	0	1	1887200	+		1427	11822	943	952	2035	2035					-0.06367919712704406
DECVPHLIF	9	Unmodified	_DECVPHLIF_					0	0	0			REV__ENST00000526011.2_1_11:122484535-122484616:-|nuORF	REV__ENST00000526011.2_1_11:122484535-122484616:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.253173828125	2	536.760235	1071.50592	0.62403	0.00033495	0.96393	0.0005174	1.588	0.00085235	536.7609525303496	77.004	0.5976	77.039	76.665	77.263	0.034485					33	22	2	0	0	0	0.21398	1	18357	18357		16.942	2.104	1	220890	+		1428	12325	944	953	2036	2036					-0.026975921827897764
DEEDFPNL	8	Unmodified	_DEEDFPNL_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7060546875	2	489.70618	977.397806	0.72827	0.00035664	-1.1215	-0.00054923	-0.39327	-0.00019259	489.7056008031962	81.539	0.55336	81.539	81.317	81.87	0					30	18	2	0	0	0	0.53817	1	19911	19911		2.5775	0	1	220700	+		1429	9083	945	954	2037	2037					-0.0917968523235686
DEEDFPNL	8	Unmodified	_DEEDFPNL_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.70562744140625	2	489.70618	977.397806	0.021623	1.0589E-05	-0.56222	-0.00027532	-0.5406	-0.00026473	489.70584598696354	86.596	0.29919	86.596	86.383	86.683	0					15	10	2	0	0	0	0.53817	1	21480	21480		2.5775	0	1	249760	+		1430	9083	945	954	2038	2038					-0.0917968523235686
DEEDFPNL	8	Unmodified	_DEEDFPNL_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7059326171875	2	489.70618	977.397806	0.37532	0.0001838	-0.86447	-0.00042334	-0.48915	-0.00023954	489.7057566311182	81.584	0.64006	81.606	81.329	81.969	0.021866					37	22	2	0	0	0	0.53817	2	19746	19746;19796		2.5775	0	1	247580	+		1431	9083	945	954	2039;2040	2039					-0.0917968523235686
DEEEMEDLL	9	Unmodified	_DEEEMEDLL_					0	0	0		nc|ENSG00000236320|P0C7P3-2|SLFN14;ENSG00000236320|ENST00000674182|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7952270507812	2	561.728994	1121.44344	0.10725	6.0244E-05	-0.54219	-0.00030456	-0.43494	-0.00024432	561.7285291040051	59.146	0.36792	59.146	59.062	59.43	0					14	13	2	0	0	0	0.25644	1	13096	13096		3.9444	1.3669	1	104360			1432	5631	946	955	2041	2041					-0.11242827832302282
DEEFRHLYA	9	Unmodified	_DEEFRHLYA_					0	0	0		nc|ENSG00000147689|Q86UY5-2|FAM83A;nc|ENSG00000147689|Q86UY5-3|FAM83A;ENSG00000147689|ENST00000690554|FAM83A	nc|ENSG00000147689|Q86UY5-2|FAM83A	nc|ENSG00000147689|Q86UY5-2|FAM83A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2747802734375	2	590.275095	1178.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.519	1	22.62	22.12	23.12	0.10178								0	0	0	0.29233	1	2046	2046		0.6015	0	1				1433	3340	947	956	2042	2042					-0.046489369130767955
DEFASFPHL	9	Unmodified	_DEFASFPHL_					0	0	0		ENSG00000169783|ENST00000355300|LINGO1;nc|ENSG00000169783|Q96FE5-2|LINGO1;LINGO1|p.Q164Rfs*33|1|0.05|ENSG00000169783|chr15:77615418-77615418|A/-|frameshift_variant	ENSG00000169783|ENST00000355300|LINGO1	ENSG00000169783|ENST00000355300|LINGO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.747802734375	2	531.748182	1061.48181	-0.11731	-6.2382E-05	-0.67855	-0.00036082	-0.79587	-0.0004232	531.7477287405421	27.879	0.61014	27.879	27.661	28.271	0					71	33	3	0	0	0	0.3182	1	3713	3713		4.3292	0	1	52930			1434	4357	948	957	2043	2043					-0.046471093448190004
DEFATIQKEL	10	Unmodified	_DEFATIQKEL_					0	0	0			REV__ENST00000451177.1_1_2:233594235-233594304:-|nuORF	REV__ENST00000451177.1_1_2:233594235-233594304:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.856689453125	2	597.306061	1192.59757	0.21076	0.00012589	1.9794	0.0011823	2.1901	0.0013082	597.3073741430073	90.621	0.34043	90.621	90.467	90.808	0					16	12	2	0	0	0	0.31708	1	22707	22707		7.609	1.4032	1	77261	+		1435	11929	949	958	2044	2044					0.008973697153805915
DEFEYCWDTF	10	Unmodified	_DEFEYCWDTF_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.1695556640625	3	452.169266	1353.48597	0.30882	0.00013964	-0.06589	-2.9793E-05	0.24293	0.00010984	452.169279664087	49.208	0.76148	49.208	48.945	49.707	0					94	26	6	0	0	0	0.47161	1	10103	10103		0.69767	0.53834	1	373260			1436	4785	950	959	2045	2045					-0.17663432704102888
DEFEYCWDTF	10	Unmodified	_DEFEYCWDTF_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.1692810058594	3	452.169266	1353.48597	0.2905	0.00013135	-0.0066155	-2.9913E-06	0.28388	0.00012836	452.1693137815217	51.105	1.4535	51.105	50.651	52.104	0					157	49	6	0	0	0	0.47161	2	10670	10670;10722		0.69767	0.53834	1	381000			1437	4785	950	959	2046;2047	2046					-0.17663432704102888
DEFEYCWDTF	10	Unmodified	_DEFEYCWDTF_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.1693115234375	3	452.169266	1353.48597	0.0062609	2.831E-06	0.25466	0.00011515	0.26092	0.00011798	452.1695756511361	49.107	0.55423	49.184	48.93	49.484	0.076607					90	20	7	0	0	0	0.47161	1	9949	9949		0.69767	0.24315	1	264000			1438	4785	950	959	2048	2048					-0.17663432704102888
DEFEYCWDTF	10	Unmodified	_DEFEYCWDTF_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.1694030761719	3	452.169266	1353.48597	0.17581	7.9497E-05	0.16231	7.3391E-05	0.33812	0.00015289	452.1693763749515	51.063	1.5281	51.133	50.766	52.294	0.069878					168	57	6	0	0	0	0.46521	3	10466	10466;10515;10563		1.9064	1.4004	1	326570			1439	4785	950	959	2049;2050;2051	2049					-0.17663432704102888
DEFKRLFAKY	10	Unmodified	_DEFKRLFAKY_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.5711669921875	3	439.571434	1315.69247	0.33154	0.00014574	-0.50891	-0.0002237	-0.17736	-7.7965E-05	439.57126481669735	49.16	0.52978	49.16	49.004	49.534	0					38	18	3	0	0	0	0.37121	1	10068	10068		14.957	0	1	128750			1440	1961	951	960	2052	2052					0.047253479772280116
DEFKRLFAKY	10	Unmodified	_DEFKRLFAKY_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.57135009765625	3	439.571434	1315.69247	-0.023857	-1.0487E-05	-0.14563	-6.4013E-05	-0.16948	-7.45E-05	439.57124860689333	49.116	0.4721	49.192	48.956	49.428	0.076607					39	17	3	0	0	0	0.31602	1	9908	9908		12.175	0	1	142900			1441	1961	951	960	2053	2053					0.047253479772280116
DEFPQQYRS	9	Unmodified	_DEFPQQYRS_					0	0	0			REV__nc|ENSG00000124181|P19174|PLCG1	REV__nc|ENSG00000124181|P19174|PLCG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.266357421875	2	585.264727	1168.5149	0.083576	4.8914E-05	3.246	0.0018998	3.3296	0.0019487	585.2665309810563	29.787	0.29179	29.787	29.666	29.958	0					28	14	3	0	0	0	0.33978	1	4222	4222		1.4819	0.28856	1	32750	+		1442	8948	952	961	2054	2054					-0.06261527292781466
DEFQWLQID	9	Unmodified	_DEFQWLQID_					0	0	0		DCBLD2|p.Y348F|1|0.27|ENSG00000057019|chr3:98819246-98819246|T/A|missense_variant	DCBLD2|p.Y348F|1|0.27|ENSG00000057019|chr3:98819246-98819246|T/A|missense_variant	DCBLD2|p.Y348F|1|0.27|ENSG00000057019|chr3:98819246-98819246|T/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.27685546875	2	597.277303	1192.54005	0.12453	7.4376E-05	-0.5944	-0.00035502	-0.46987	-0.00028064	597.7784446433373	83.269	0.3017	83.291	83.225	83.527	0.021744					17	10	2	0	0	0	0.27266	1	20330	20330		10.151	1.1743	1	83265			1443	266	953	962	2055	2055					-0.04851472490190645
DEFQWLQID	9	Unmodified	_DEFQWLQID_					0	0	0		DCBLD2|p.Y348F|1|0.27|ENSG00000057019|chr3:98819246-98819246|T/A|missense_variant	DCBLD2|p.Y348F|1|0.27|ENSG00000057019|chr3:98819246-98819246|T/A|missense_variant	DCBLD2|p.Y348F|1|0.27|ENSG00000057019|chr3:98819246-98819246|T/A|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	597.277303	1192.54005	0.39224	0.00023428	-1.0814	-0.00064587	-0.68911	-0.00041159	597.2766921329413	83.261	0.34616	83.261	83.079	83.425	0	-0.014787	-0.00044409	NaN	10.151	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78682			1444	266	953	962							-0.04851472490190645
DEFSIFFD	8	Unmodified	_DEFSIFFD_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENST00000483032.1_1_1:155726967-155727102:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7098693847656	2	510.221465	1018.42838	0.0056038	2.8592E-06	-1.6803	-0.0008573	-1.6746	-0.00085444	510.2205657581436	34.292	1.0441	34.292	33.958	35.002	0					46	40	2	0	0	0	0.53026	1	5605	5605		7.9102	2.1783	1	21998			1445	1962	954	963	2056	2056					-0.08009906847325965
DEHAKIELL	9	Unmodified	_DEHAKIELL_					0	0	0			REV__nc|ENSG00000120868|O14727-3|APAF1	REV__nc|ENSG00000120868|O14727-3|APAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2907104492188	2	534.290214	1066.56587	0.48386	0.00025852	1.5635	0.00083535	2.0473	0.0010939	534.290956345686	109.55	0.15781	109.57	109.48	109.64	0.019409					18	15	2	0	0	0	0.32112	1	28037	28037		3.9444	0.3479	1	373560	+		1446	8888	955	964	2057	2057					0.03525421752101465
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.8823547363281	3	416.882559	1247.62585	0.60899	0.00025388	-0.53094	-0.00022134	0.078052	3.2538E-05	416.88224968877535	47.289	0.43966	47.289	47.144	47.583	0					35	14	4	0	0	0	0.2498	1	9490	9490		19.144	11.298	1	179120			1447	1205	956	965	2058	2058					0.011941124153281635
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	416.882559	1247.62585	0.60899	0.00025388	-0.53094	-0.00022134	0.078052	3.2538E-05	416.88224968877535	47.289	0.43966	47.289	47.144	47.583	0	-0.0079468	-0.0003469	NaN	19.144	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179120			1448	1205	956	965							0.011941124153281635
DEIERKFDKW	10	Unmodified	_DEIERKFDKW_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.232177734375	3	455.898098	1364.67246	-0.36455	-0.0001662	-0.51068	-0.00023282	-0.87523	-0.00039902	455.89785139475674	42.203	0.82652	42.203	42.03	42.857	0					59	28	3	0	0	0	0.33205	1	7957	7957		19.144	14.096	1	157040			1449	1479	957	966	2059	2059					0.004715522466085531
DEIERKFDKW	10	Unmodified	_DEIERKFDKW_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.8977966308594	3	455.898098	1364.67246	-0.39526	-0.0001802	-0.12122	-5.5262E-05	-0.51647	-0.00023546	455.8980284502624	42.126	0.55297	42.216	41.994	42.547	0.089764					56	20	4	0	0	0	0.16137	1	7797	7797		38.161	27.095	1	255260			1450	1479	957	966	2060	2060					0.004715522466085531
DEIKQSPDE	9	Unmodified	_DEIKQSPDE_					0	0	0		ENSG00000183775|ENST00000512467|KCTD16	ENSG00000183775|ENST00000512467|KCTD16	ENSG00000183775|ENST00000512467|KCTD16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.801513671875	2	530.743293	1059.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.092	1	98.092	97.592	98.592	0								0	0	0	0.28073	1	24966	24966		2.9952	0.49676	1				1451	4939	958	967	2061	2061					-0.05532342140850233
DEISRSWSRL	10	Unmodified	_DEISRSWSRL_					0	0	0			REV__ENSG00000161791|ENST00000335154|FMNL3	REV__ENSG00000161791|ENST00000335154|FMNL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8824157714844	3	416.882559	1247.62585	0.21702	9.0472E-05	-0.053988	-2.2507E-05	0.16303	6.7965E-05	416.88242955209114	47.222	0.38293	47.305	47.124	47.507	0.083096					33	14	3	0	0	0	0.44727	1	9361	9361		2.8433	0.4085	1	133470	+		1452	9868	959	968	2062	2062					0.011941124153509008
DEKCQKLF	8	Unmodified	_DEKCQKLF_					0	0	0		tr|U7SLT6|U7SLT6_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01887PE=3SV=1	tr|U7SLT6|U7SLT6_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01887PE=3SV=1	tr|U7SLT6|U7SLT6_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01887PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.75225830078125	2	505.75241	1009.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.427	1	96.427	95.927	96.927	0								0	0	0	0.38822	1	24461	24461		11.64	0	1				1453	13497	960	969	2063	2063					-0.014098786998488322
DEKEGRLTYWD	11	Unmodified	_DEKEGRLTYWD_					0	0	0			REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2594299316406	3	471.221129	1410.64156	-0.57193	-0.0002695	0.83136	0.00039175	0.25943	0.00012225	471.2206158358	42.135	0.35866	42.225	42.072	42.431	0.089764					25	13	3	0	0	0	0.311	1	7871	7871		0.50596	0	1	58756	+		1454	13078	961	970	2064	2064					-0.047336458582776686
DELCQFTLRPS	11	Unmodified	_DELCQFTLRPS_					0	0	0			REV__nc|ENSG00000155926|Q13239-2|SLA	REV__nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.8792724609375	3	436.879939	1307.61799	0.74357	0.00032485	-0.63152	-0.0002759	0.11205	4.8952E-05	436.8790599724461	82.288	0.52575	82.288	82.008	82.534	0					28	18	2	0	0	0	0.41359	1	20196	20196		1.2148	0.4383	1	57005	+		1455	9741	962	971	2065	2065					-0.02351782896471377
DELTLPVCCL	10	Unmodified	_DELTLPVCCL_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.26708984375	2	553.267035	1104.51952	0.071014	3.929E-05	0.42022	0.00023249	0.49123	0.00027178	553.2671941370072	27.49	0.62024	27.576	27.491	28.112	0.0867					92	44	3	0	0	0	0.46656	1	3485	3485		1.6526	0.32309	1	74607	+		1456	8487	963	972	2066	2066					-0.02856102465875665
DEMSRTVLF	9	Unmodified	_DEMSRTVLF_					0	0	0			REV__ENSG00000177971|ENST00000403490|IMP3	REV__ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2675170898438	2	549.268424	1096.5223	0.26864	0.00014756	-0.89611	-0.0004922	-0.62746	-0.00034465	549.2674138018266	50.865	5.1143	50.865	46.744	51.858	0					238	178	3	0	0	0	0.30005	1	10534	10534		6.7232	2.7788	1	156660	+		1457	10438	964	973	2067	2067					-0.022105110167103703
DENEFQSLQ	9	Unmodified	_DENEFQSLQ_					0	0	0			REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF	REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2589721679688	2	555.240918	1108.46728	0.5675	0.0003151	-2.2542	-0.0012516	-1.6867	-0.00093654	555.2398099287392	53.71	0.35403	53.71	53.513	53.867	0					27	12	3	0	0	0	0.18479	1	11401	11401		20.454	0	1	106760	+		1458	9320	965	974	2068	2068					-0.08261226283616452
DENEFQSLQ	9	Unmodified	_DENEFQSLQ_					0	0	0			REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF	REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.259033203125	2	555.240918	1108.46728	0.6875	0.00038173	-2.423	-0.0013453	-1.7355	-0.0009636	555.2395629427319	53.654	0.33931	53.719	53.555	53.894	0.06543					25	14	2	0	0	0	0.18364	1	11259	11259		20.454	4.6064	1	109340	+		1459	9320	965	974	2069	2069					-0.08261226283616452
DENWPWWLP	9	Unmodified	_DENWPWWLP_					0	0	0		ENST00000454201.5_1_3:50363554-50364527:-|nuORF	ENST00000454201.5_1_3:50363554-50364527:-|nuORF	ENST00000454201.5_1_3:50363554-50364527:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.7813720703125	2	621.782556	1241.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.59	1	106.62	106.12	107.12	0.025711								0	0	0	0.29233	1	27291	27291		0.6015	0	1				1460	6579	966	975	2070	2070					-0.060554450451036246
DEPEARAAI	9	Unmodified	_DEPEARAAI_					0	0	0		AP1B1|p.M448I|1|0.3|ENSG00000100280|chr22:29349311-29349311|C/T|missense_variant	AP1B1|p.M448I|1|0.3|ENSG00000100280|chr22:29349311-29349311|C/T|missense_variant	AP1B1|p.M448I|1|0.3|ENSG00000100280|chr22:29349311-29349311|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2431640625	2	486.243264	970.471974	-0.33002	-0.00016047	0.16964	8.2484E-05	-0.16039	-7.7986E-05	486.24343552599834	31.247	1.9287	31.247	31.001	32.93	0					201	86	4	0	0	0	0.15282	1	4713	4713		24.021	1.2843	1	1866000			1461	38	967	976	2071	2071					-0.01444297350190027
DEPEESRTL	9	Unmodified	_DEPEESRTL_					0	0	0			REV__nc|ENSG00000167395|O15015-1|ZNF646	REV__nc|ENSG00000167395|O15015-1|ZNF646	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2484130859375	2	538.248743	1074.48293	0.17903	9.636E-05	0.031056	1.6716E-05	0.21008	0.00011308	538.2487118302492	33.346	0.39904	33.42	33.234	33.633	0.074322					30	15	3	0	0	0	0.25921	1	5201	5201		1.4819	0	1	44608	+		1462	10117	968	977	2072	2072					-0.051329397665540455
DEPEESRTL	9	Unmodified	_DEPEESRTL_					0	0	0			REV__nc|ENSG00000167395|O15015-1|ZNF646	REV__nc|ENSG00000167395|O15015-1|ZNF646	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	538.248743	1074.48293	-0.0014335	-7.716E-07	0.098564	5.3052E-05	0.097131	5.2281E-05	538.2486661308469	33.407	0.46462	33.407	33.223	33.688	0	-0.0066059	3.5938E-05	NaN	1.4819	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57367	+		1463	10117	968	977							-0.051329397665540455
DEPGRWYYRR	10	Unmodified	_DEPGRWYYRR_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.895263671875	3	466.56182	1396.66363	-0.51495	-0.00024026	-1.1722	-0.0005469	-1.6871	-0.00078715	466.89550315480244	42.112	0.44427	42.202	42.048	42.492	0.089767					36	16	3	0	0	0	0.44671	1	7813	7813		5.4027	1.2861	1	127160	+		1464	10061	969	978	2073	2073					-0.018833765992212648
DEPHEDVL	8	Unmodified	_DEPHEDVL_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7578430175781	2	477.214172	952.413791	-0.09219	-4.3995E-05	-2.137	-0.0010198	-2.2292	-0.0010638	477.21314932924366	51.129	0.40429	51.129	50.981	51.386	0					22	13	2	0	0	0	0.3576	1	10648	10648		4.756	0.81161	1	59301	+		1465	8217	970	979	2074	2074					-0.06431978995465215
DEQAKSHRDDR	11	Unmodified	_DEQAKSHRDDR_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8810729980469	3	452.879878	1355.6178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.106	1	89.106	88.606	89.606	0								0	0	0	0.34096	1	22231	22231		0.40827	0	1				1466	3554	971	980	2075	2075					-0.045780665720940306
DEREQVVK	8	Unmodified	_DEREQVVK_					0	0	0			REV__nc|ENSG00000136522|Q9HD33-3|MRPL47	REV__nc|ENSG00000136522|Q9HD33-3|MRPL47	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.23779296875	2	501.764363	1001.51417	-0.42879	-0.00021515	-0.12325	-6.1842E-05	-0.55203	-0.00027699	501.7643447117271	42.438	0.40282	42.438	42.333	42.736	0					16	13	2	0	0	0	0.3576	1	8069	8069		8.5933	1.304	1	40814	+		1467	9244	972	981	2076	2076					0.013476780581981984
DERTGSRSR	9	Unmodified	_DERTGSRSR_					0	0	0			REV__ENST00000510379.1_1_4:148653256-148653571:+|nuORF	REV__ENST00000510379.1_1_4:148653256-148653571:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2662963867188	2	532.265593	1062.51663	0.075612	4.0245E-05	0.19671	0.0001047	0.27232	0.00014495	532.2657355943059	34.53	0.58816	34.53	34.356	34.944	0					34	22	2	0	0	0	0.32831	1	5702	5702		2.9952	0.41776	1	59149	+		1468	12253	973	982	2077	2077					-0.012124734841336249
DESGSVDQSPM	11	Unmodified	_DESGSVDQSPM_					0	0	0			REV__ENSG00000010072|ENST00000295050|SPRTN	REV__ENSG00000010072|ENST00000295050|SPRTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2315673828125	2	576.229693	1150.44483	0.18567	0.00010699	1.3042	0.00075154	1.4899	0.00085853	576.2304251102793	50.546	0.60567	50.546	50.376	50.981	0					41	20	3	0	0	0	0.36864	1	10465	10465		10.151	0.76745	1	209690	+		1469	7969	974	983	2078	2078					-0.12437193743539865
DESNVAVTR	9	Unmodified	_DESNVAVTR_					0	0	0		ENST00000533428.2_1_15:97300531-97301611:+|nuORF;nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1	ENST00000533428.2_1_15:97300531-97301611:+|nuORF	ENST00000533428.2_1_15:97300531-97301611:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.74591064453125	2	495.74617	989.477788	0.14183	7.0313E-05	-0.1824	-9.0422E-05	-0.040563	-2.0109E-05	495.7460253630164	22.543	0.39464	22.645	22.508	22.903	0.10178					63	39	2	0	0	0	0.33978	1	2103	2103		1.4819	0	1	63166			1470	2904	975	984	2079	2079					-0.017371988385320947
DESVDYVPM	9	Unmodified	_DESVDYVPM_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7247924804688	2	527.723515	1053.43248	-0.15818	-8.3478E-05	0.18859	9.9523E-05	0.030405	1.6045E-05	527.7236519110553	28.552	0.39699	28.634	28.436	28.833	0.082132					33	20	2	0	0	0	0.33356	1	3732	3732		2.3027	1.5091	1	32616			1471	1814	976	985	2080	2080					-0.09210185415918204
DESVKKIKDVL	11	Unmodified	_DESVKKIKDVL_					0	0	0			REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1	REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3740844726562	2	637.371735	1272.72892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.73	1	101.73	101.23	102.23	0								0	0	0	0.32823	1	26071	26071		4.897	0	1		+		1472	13214	977	986	2081	2081					0.10346180083274703
DETLSGSEL	9	Unmodified	_DETLSGSEL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.71893310546875	2	475.719287	949.424021	-0.36537	-0.00017381	-0.19016	-9.0464E-05	-0.55553	-0.00026428	475.7190935182589	43.525	0.30437	43.525	43.358	43.663	0					18	11	2	0	0	0	0.17247	1	8365	8365		21.747	1.293	1	46377			1473	5216	978	987	2082	2082					-0.052714160608843486
DETLSGSEL	9	Unmodified	_DETLSGSEL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.7193298339844	2	475.719287	949.424021	-0.29984	-0.00014264	-0.16448	-7.8248E-05	-0.46432	-0.00022089	475.71905627566474	43.428	0.35196	43.517	43.361	43.713	0.088924					19	12	2	0	0	0	0.18364	1	8207	8207		20.454	4.6064	1	53510			1474	5216	978	987	2083	2083					-0.052714160608843486
DETLSGSEL	9	Unmodified	_DETLSGSEL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	475.719287	949.424021	-0.28715	-0.0001366	0.42541	0.00020237	0.13826	6.5773E-05	475.7196442182441	43.712	0.35109	43.801	43.713	44.064	0.088924	0.13804	0.00048163	NaN	21.747	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31959			1475	5216	978	987							-0.052714160608843486
DEVPNMSLSL	10	Unmodified	_DEVPNMSLSL_					0	0	0			REV__ENSG00000171487|ENST00000390649|NLRP5	REV__ENSG00000171487|ENST00000390649|NLRP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2677612304688	2	552.765714	1103.51688	0.16819	9.297E-05	0.4447	0.00024582	0.61289	0.00033879	552.7659447762762	33.093	2.1934	33.167	32.422	34.615	0.074322					239	96	3	0	0	0	0.46083	1	5414	5414		2.7352	0	1	187640	+		1476	10258	979	988	2084	2084					-0.030742345991711773
DEVWFVCQLT	10	Unmodified	_DEVWFVCQLT_					0	0	0			REV__nc|ENSG00000205336|Q9Y653-5|ADGRG1	REV__nc|ENSG00000205336|Q9Y653-5|ADGRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.103759765625	2	620.289356	1238.56416	-0.073112	-4.5351E-05	3.759	0.0023317	3.6859	0.0022863	620.2919823268674	58.212	0.18188	58.282	58.184	58.366	0.070477					9	6	2	0	0	0	0.44727	1	12665	12665		5.2969	0.76802	1	65615	+		1477	10973	980	989	2085	2085					-0.04557955328164098
DEVYKGYF	8	Unmodified	_DEVYKGYF_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000450172.5_2_3:46722734-46730936:-|nuORF	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.26519775390625	2	510.737283	1019.46001	0.30692	0.00015676	0.078384	4.0033E-05	0.38531	0.00019679	510.7373068980089	82.457	0.24211	82.479	82.347	82.589	0.021751					11	8	2	0	0	0	0.3576	1	20068	20068		4.3292	0	1	69671			1478	4731	981	990	2086	2086					-0.04893914093383955
DFAETYGY	8	Unmodified	_DFAETYGY_					0	0	0			REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.1965026855469	2	483.19799	964.381428	-0.4348	-0.00021009	-0.31336	-0.00015142	-0.74816	-0.00036151	483.1977528469333	26.735	0.91923	26.735	26.392	27.312	0					141	63	3	0	0	0	0.53817	1	3273	3273		2.5775	0	1	231280	+		1479	7744	982	991	2087	2087					-0.10218766398486423
DFAFSLYKH	9	Unmodified	_DFAFSLYKH_					0	0	0		SERPINA6|p.V44A|1|0.16|ENSG00000170099|chr14:94314518-94314518|A/G|missense_variant;ENSG00000170099|ENST00000341584|SERPINA6	SERPINA6|p.V44A|1|0.16|ENSG00000170099|chr14:94314518-94314518|A/G|missense_variant	SERPINA6|p.V44A|1|0.16|ENSG00000170099|chr14:94314518-94314518|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.278076171875	2	564.279649	1126.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.866	1	26.866	26.366	27.366	0								0	0	0	0.28631	1	3382	3382		1.8442	0.6509	1				1480	4376	983	992	2088	2088					-0.01346543556769575
DFAVFQYEF	9	Unmodified	_DFAVFQYEF_					0	0	0			REV__ENSG00000146530|ENST00000275358|VWDE	REV__ENSG00000146530|ENST00000275358|VWDE	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2822875976562	2	583.263665	1164.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.227	1	93.264	92.764	93.764	0.037369								0	0	0	0.23452	1	23326	23326		12.532	0	1		+		1481	9546	984	993	2089	2089					-0.06289956030582289
DFAVFQYEF	9	Unmodified	_DFAVFQYEF_					0	0	0			REV__ENSG00000146530|ENST00000275358|VWDE	REV__ENSG00000146530|ENST00000275358|VWDE	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2813110351562	2	583.263665	1164.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.326	1	93.364	92.864	93.864	0.037369								0	0	0	0.23452	1	23356	23356		12.532	0	1		+		1482	9546	984	993	2090	2090					-0.06289956030582289
DFDEIRQEI	9	Unmodified	_DFDEIRQEI_					0	0	0		ENST00000551076.5_1_12:32832273-32863873:+|nuORF;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L	ENST00000551076.5_1_12:32832273-32863873:+|nuORF	ENST00000551076.5_1_12:32832273-32863873:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8052978515625	2	582.78021	1163.54587	0.49703	0.00028966	4.3264	0.0025213	4.8234	0.002811	582.7815870411306	73.294	0.84348	73.346	73.093	73.937	0.052574					93	32	5	0	0	0	0.2125	1	17238	17238		17.113	3.498	1	1411600			1483	1001	985	994	2091	2091					-0.029363739785139842
DFDKYIAY	8	Unmodified	_DFDKYIAY_					0	0	0		ENSG00000186280|ENST00000335080|KDM4D	ENSG00000186280|ENST00000335080|KDM4D	ENSG00000186280|ENST00000335080|KDM4D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.7447509765625	2	517.745108	1033.47566	0.30715	0.00015903	-0.89703	-0.00046443	-0.58988	-0.00030541	517.7446481032375	91.642	0.78935	91.678	91.464	92.253	0.035446					48	27	3	0	0	0	0.4433	1	22882	22882		20.454	2.3073	1	292610			1484	5073	986	995	2092	2092					-0.039736275763289086
DFDKYIAY	8	Unmodified	_DFDKYIAY_					0	0	0		ENSG00000186280|ENST00000335080|KDM4D	ENSG00000186280|ENST00000335080|KDM4D	ENSG00000186280|ENST00000335080|KDM4D	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	517.745108	1033.47566	0.49491	0.00025624	-1.5213	-0.00078766	-1.0264	-0.00053142	517.7443876200545	91.686	0.89508	91.686	91.484	92.379	0	0.0040522	-0.00024834	NaN	20.454	55	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415690			1485	5073	986	995							-0.039736275763289086
DFDQLLEAL	9	Unmodified	_DFDQLLEAL_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2688598632812	2	532.268947	1062.52334	0.54991	0.0002927	0.11875	6.3205E-05	0.66866	0.00035591	532.2688937691465	69.46	1.1794	69.46	68.888	70.067	0					98	41	3	0	0	0	0.17428	1	16387	16387		21.537	3.3906	1	377210			1486	1561	987	996	2093	2093					-0.005419733761300449
DFDQLLEAL	9	Unmodified	_DFDQLLEAL_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.26953125	2	532.268947	1062.52334	0.39558	0.00021056	0.099307	5.2858E-05	0.49489	0.00026341	532.268925937415	69.354	1.1845	69.416	68.945	70.13	0.062126					93	45	3	0	0	0	0.11198	3	15989	15989;16080;16229		29.841	7.1043	1	421170			1487	1561	987	996	2094;2095;2096	2094					-0.005419733761300449
DFDRLEHWF	9	Unmodified	_DFDRLEHWF_					0	0	0		tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.19635009765625	3	422.196367	1263.56727	0.63652	0.00026874	-0.83546	-0.00035273	-0.19894	-8.3991E-05	422.19600597858107	63.096	0.73724	63.096	62.912	63.649	0					63	27	3	0	0	0	0.33208	1	14333	14333		2.4985	0.24576	1	752050			1488	13604	988	997	2097	2097					-0.05396944159178929
DFDVAVVTF	9	Unmodified	_DFDVAVVTF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7530212402344	2	506.752933	1011.49131	0.37968	0.0001924	0.0021338	1.0813E-06	0.38181	0.00019348	506.75282622616294	91.695	1.3852	91.695	91.269	92.654	0					114	52	4	0	0	0	6.8107E-09	4	23005	22958;23005;23057;23110		164.52	100.28	1	2472700			1489	4532	989	998	2098;2099;2100;2101	2099					-0.013973410592939217
DFDVAVVTF	9	Unmodified	_DFDVAVVTF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7531433105469	2	506.752933	1011.49131	0.25801	0.00013075	0.19259	9.7597E-05	0.4506	0.00022834	506.7529027015443	91.658	1.4516	91.693	91.384	92.835	0.035446					125	51	5	0	0	0	2.2448E-09	3	22845	22801;22845;22896		172.91	104.83	1	2147500			1490	4532	989	998	2102;2103;2104	2103					-0.013973410592939217
DFDVDSQIR	9	Unmodified	_DFDVDSQIR_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.758544921875	2	547.759278	1093.504	0.34847	0.00019088	-1.3785	-0.0007551	-1.0301	-0.00056423	547.7582290991902	91.62	0.54972	91.655	91.361	91.91	0.035446					74	19	6	0	0	0	0.27929	1	22817	22817		9.3831	0	1	704560			1491	5533	990	999	2105	2105					-0.03900929667065611
DFEIDMYK	8	Unmodified	_DFEIDMYK_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7696533203125	2	530.736425	1059.4583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.288	1	67.288	66.788	67.788	0								0	0	0	0.38822	1	15584	15584		8.5933	0.68312	1		+		1492	10096	991	1000	2106	2106					-0.06905291173666228
DFEKIKNW	8	Unmodified	_DFEKIKNW_					0	0	0		nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7852172851562	2	540.279649	1078.54475	0.265	0.00014317	0.25754	0.00013915	0.52254	0.00028232	540.2796136666368	53.155	1.458	53.155	52.584	54.042	0					174	55	4	0	0	0	0.53345	1	11467	11467		5.7604	0.52976	1	1889800			1493	1175	992	1001	2107	2107					0.00861456443226416
DFESKFTF	8	Unmodified	_DFESKFTF_					0	0	0		ENSG00000122574|ENST00000242140|WIPF3	ENSG00000122574|ENST00000242140|WIPF3	ENSG00000122574|ENST00000242140|WIPF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.737060546875	2	510.737283	1019.46001	0.0027024	1.3802E-06	1.9087	0.00097484	1.9114	0.00097622	510.73709348246166	34.25	0.43583	34.25	33.984	34.42	0					38	16	3	0	0	0	0.3576	1	5540	5540		5.2307	0	1	45036			1494	2188	993	1002	2108	2108					-0.048939140933725866
DFETGLGPWN	10	Unmodified	_DFETGLGPWN_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4;ENST00000485732.5_1_9:139748116-139749417:+|nuORF	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7564697265625	2	568.256371	1134.49819	-0.30033	-0.00017067	-0.39463	-0.00022425	-0.69496	-0.00039492	568.2559945563396	23.099	0.25133	23.099	22.945	23.196	0					38	23	2	0	0	0	0.46746	1	2283	2283		1.4819	0.79152	1	28087			1495	4725	994	1003	2109	2109					-0.06368028178712848
DFETGLGPWN	10	Unmodified	_DFETGLGPWN_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4;ENST00000485732.5_1_9:139748116-139749417:+|nuORF	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.256371	1134.49819	-0.013853	-7.8722E-06	-0.78552	-0.00044637	-0.79937	-0.00045425	568.2557558341698	22.865	0.28061	22.967	22.891	23.171	0.10178	-0.065943	-0.00029866	NaN	1.4819	43	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18424			1496	4725	994	1003							-0.06368028178712848
DFFAYIIF	8	Unmodified	_DFFAYIIF_					0	0	0		ENST00000486047.5_1_9:4605401-4627755:-|nuORF	ENST00000486047.5_1_9:4605401-4627755:-|nuORF	ENST00000486047.5_1_9:4605401-4627755:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7650146484375	2	518.262936	1034.51132	0.37142	0.0001925	0.19845	0.00010285	0.56988	0.00029535	518.2624099810158	75.166	0.60216	75.21	74.967	75.569	0.044037					49	21	3	0	0	0	0.39998	1	17836	17836		26.341	2.1313	1	673820			1497	6781	995	1004	2110	2110					-0.00455545328691187
DFFAYIIF	8	Unmodified	_DFFAYIIF_					0	0	0		ENST00000486047.5_1_9:4605401-4627755:-|nuORF	ENST00000486047.5_1_9:4605401-4627755:-|nuORF	ENST00000486047.5_1_9:4605401-4627755:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	518.262936	1034.51132	0.47987	0.0002487	0.26432	0.00013699	0.7442	0.00038569	518.7649413549306	75.247	0.57082	75.247	74.961	75.532	0	0.018624	3.4903E-05	NaN	26.341	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563380			1498	6781	995	1004							-0.00455545328691187
DFGAAQLDQLM	11	Unmodified	_DFGAAQLDQLM_					0	0	0			REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7684326171875	2	604.784438	1207.55432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.448	1	60.448	59.948	60.948	0								0	0	0	0.3155	1	13493	13493		9.3831	0	1		+		1499	9076	996	1005	2111	2111					-0.04115143333569904
DFGVYSYLF	9	Unmodified	_DFGVYSYLF_					0	0	0		nc|ENSG00000163728|Q96N46-2|TTC14	nc|ENSG00000163728|Q96N46-2|TTC14	nc|ENSG00000163728|Q96N46-2|TTC14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7947998046875	2	555.760758	1109.50696	0.71783	0.00039894	-1.7558	-0.00097581	-1.038	-0.00057687	555.7584759977076	54.092	0.088608	54.092	54.042	54.131	0					4	2	2	0	0	0	0.24263	1	11570	11570		12.532	1.4171	1	25975			1500	7548	997	1006	2112	2112					-0.04341054542260281
DFHLDRLQAF	10	Unmodified	_DFHLDRLQAF_					0	0	0			REV__PWP2-TRAPPC10|1|fusion	REV__PWP2-TRAPPC10|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.8732604980469	3	421.21565	1260.62512	-0.035034	-1.4757E-05	-2.3497	-0.00098973	-2.3847	-0.0010045	421.5494899473325	48.774	0.61745	48.85	48.567	49.185	0.076607					39	21	3	0	0	0	0.46608	1	9782	9782		1.7423	0.28716	1	64963	+		1501	12968	998	1007	2113	2113					0.0052331776628307125
DFHWEPLPE	9	Unmodified	_DFHWEPLPE_					0	0	0		ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2661743164062	2	585.266739	1168.51892	0.25549	0.00014953	-0.25841	-0.00015124	-0.0029221	-1.7102E-06	585.266654360902	29.717	0.3145	29.792	29.673	29.987	0.075403					29	18	2	0	0	0	0.33704	1	4091	4091		1.8442	0	1	24357			1502	2527	999	1008	2114	2114					-0.058594377990630164
DFIAELGLDM	10	Unmodified	_DFIAELGLDM_					0	0	0			REV__ENSG00000171428|ENST00000307719|NAT1	REV__ENSG00000171428|ENST00000307719|NAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7958984375	2	562.270632	1122.52671	0.50218	0.00028236	0.41986	0.00023608	0.92204	0.00051844	562.2707931662588	77.537	0.71593	77.572	77.369	78.085	0.034485					48	24	3	0	0	0	0.31747	1	18710	18710		5.7319	1.7875	1	363690	+		1503	10253	1000	1009	2115	2115					-0.029650465937947956
DFIAELGLDM	10	Unmodified	_DFIAELGLDM_					0	0	0			REV__ENSG00000171428|ENST00000307719|NAT1	REV__ENSG00000171428|ENST00000307719|NAT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.270632	1122.52671	0.31695	0.00017821	0.5949	0.0003345	0.91186	0.00051271	562.2709115190543	77.652	0.64597	77.652	77.338	77.984	0	0.040253	5.073E-05	NaN	12.241	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397540	+		1504	10253	1000	1009							-0.029650465937947956
DFISTLSYI	9	Unmodified	_DFISTLSYI_					0	0	0		ENST00000572638.1_1_17:44625595-44632942:+|nuORF;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A	ENST00000572638.1_1_17:44625595-44632942:+|nuORF	ENST00000572638.1_1_17:44625595-44632942:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7734985351562	2	529.773865	1057.53318	0.47885	0.00025368	-0.59945	-0.00031757	-0.12059	-6.3888E-05	529.7734355266593	67.541	0.32776	67.541	67.397	67.725	0					18	11	2	0	0	0	0.14091	1	15687	15687		25.399	4.9457	1	91497			1505	4671	1001	1010	2116	2116					0.006712146292329635
DFITFKTSFV	10	Unmodified	_DFITFKTSFV_					0	0	0			REV__ENSG00000104804|ENST00000221399|TULP2	REV__ENSG00000104804|ENST00000221399|TULP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3132934570312	2	602.816064	1203.61758	0.42945	0.00025888	2.3019	0.0013876	2.7313	0.0016465	603.3197256168881	78.565	0.72057	78.565	78.125	78.846	0					55	24	3	0	0	0	0.31731	1	19045	19045		6.2058	1.8765	1	212560	+		1506	8512	1002	1011	2117	2117					0.02391165445965271
DFITFKTSFV	10	Unmodified	_DFITFKTSFV_					0	0	0			REV__ENSG00000104804|ENST00000221399|TULP2	REV__ENSG00000104804|ENST00000221399|TULP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8150024414062	2	602.816064	1203.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.176	1	77.211	76.711	77.711	0.034485								0	0	0	0.33487	1	18444	18444		6.2058	2.2614	1		+		1507	8512	1002	1011	2118	2118					0.02391165445965271
DFLGREAMIF	10	Unmodified	_DFLGREAMIF_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7599487304688	2	599.799891	1197.58523	0.20228	0.00012133	-2.0203	-0.0012118	-1.8181	-0.0010905	599.7980436920537	51.887	0.39097	51.887	51.713	52.104	0					21	13	2	0	0	0	0.31731	1	10904	10904		6.2058	0.47393	1	64311			1508	413	1003	1012	2119	2119					-0.005659452286636224
DFLQFAVMF	9	Unmodified	_DFLQFAVMF_					0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2894287109375	2	559.272978	1116.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.114	1	79.141	78.641	79.641	0.026772								0	0	0	0.27427	1	19033	19033		4.3292	0	1		+		1509	7931	1004	1013	2120	2120					-0.0222011766036303
DFNDITNML	9	Unmodified	_DFNDITNML_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7318115234375	2	541.744782	1081.47501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.004	1	26.004	25.504	26.504	0								0	0	0	0.26747	1	3138	3138		5.7319	2.1354	1				1510	5692	1005	1014	2121	2121					-0.06246790287696058
DFNEFLLF	8	Unmodified	_DFNEFLLF_					0	0	0		TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant;ENSG00000159450|ENST00000614923|TCHH	TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7554931640625	2	522.755475	1043.4964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.511	1	65.578	65.078	66.078	0.066872								0	0	0	0.38822	1	14895	14895		13.508	4.7625	1				1511	3731	1006	1015	2122	2122					-0.02361037196669713
DFNHLFAVP	9	Unmodified	_DFNHLFAVP_					0	0	0			REV__nc|ENSG00000168778|Q96GX1-2|TCTN2	REV__nc|ENSG00000168778|Q96GX1-2|TCTN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.236083984375	2	530.266542	1058.51853	0.32849	0.00017419	-2.5841	-0.0013703	-2.2556	-0.0011961	530.2651885437842	37.205	0.25838	37.29	37.162	37.42	0.084476					12	9	2	0	0	0	0.25845	1	6297	6297		2.0598	0.40713	1	32938	+		1512	10157	1007	1016	2123	2123					-0.008388127282387359
DFNHYKME	8	Unmodified	_DFNHYKME_					0	0	0		ENSG00000071205|ENST00000336498|ARHGAP10	ENSG00000071205|ENST00000336498|ARHGAP10	ENSG00000071205|ENST00000336498|ARHGAP10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.23291015625	2	542.231842	1082.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.556	1	28.556	28.056	29.056	0								0	0	0	0.38822	1	3873	3873		4.756	0.81161	1				1513	769	1008	1017	2124	2124					-0.08879639739325285
DFNPLGEGKKW	11	Unmodified	_DFNPLGEGKKW_					0	0	0			REV__ENSG00000090520|ENST00000265028|DNAJB11	REV__ENSG00000090520|ENST00000265028|DNAJB11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	430.8882751464844	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.926	1	56.992	56.492	57.492	0.066452								0	0	0	0.33044	1	12287	12287		4.1166	0.27072	1		+		1514	8304	1009	1018	2125	2125					0.0072018456346540916
DFNPLGEGKKW	11	Unmodified	_DFNPLGEGKKW_					0	0	0			REV__ENSG00000090520|ENST00000265028|DNAJB11	REV__ENSG00000090520|ENST00000265028|DNAJB11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	430.8880615234375	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.083	1	57.151	56.651	57.651	0.068375								0	0	0	0.33044	1	12335	12335		4.1166	0.27072	1		+		1515	8304	1009	1018	2126	2126					0.0072018456346540916
DFNRLREFI	9	Unmodified	_DFNRLREFI_					0	0	0			REV__ENSG00000165434|ENST00000298198|PGM2L1	REV__ENSG00000165434|ENST00000298198|PGM2L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7685546875	2	605.32238	1208.63021	0.86694	0.00052478	1.56	0.00094429	2.4269	0.0014691	605.3233718086169	65.136	0.41618	65.136	64.87	65.286	0					20	14	2	0	0	0	0.21603	1	14900	14900		20.454	2.3073	1	154720	+		1516	10038	1010	1019	2127	2127					0.0342362162889458
DFQKWKLI	8	Unmodified	_DFQKWKLI_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.759521484375	2	539.30821	1076.60187	0.44351	0.00023919	-0.51344	-0.0002769	-0.069922	-3.7709E-05	539.3080354171542	60.987	0.27568	60.987	60.834	61.11	0					12	9	2	0	0	0	0.35759	1	13653	13653		11.64	0	1	92690			1517	4684	1011	1020	2128	2128					0.066629237196139
DFQMRLGSKF	10	Unmodified	_DFQMRLGSKF_					0	0	0		tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.5433349609375	3	410.209619	1227.60703	0.21577	8.8512E-05	2.1602	0.00088613	2.376	0.00097464	410.2111733656702	34.346	1.0376	34.346	33.906	34.944	0					93	40	4	0	0	0	0.44246	1	5467	5467		3.3196	0	1	74739			1518	13657	1012	1021	2129	2129					0.00232859519928752
DFRAIQDL	8	Unmodified	_DFRAIQDL_					0	0	0			REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2687683105469	2	489.256174	976.497795	0.21013	0.00010281	1.5807	0.00077338	1.7909	0.00087618	489.2568293917167	38.643	1.0057	38.73	38.385	39.391	0.08688					58	38	2	0	0	0	0.53118	1	6921	6921		7.2892	1.5288	1	60143	+		1519	13257	1013	1022	2130	2130					0.00860596892096055
DFRDMLVK	8	Unmodified	_DFRDMLVK_					0	0	0			REV__SOS2|p.M175R|1|0.23|ENSG00000100485|chr14:50188687-50188687|A/C|missense_variant	REV__SOS2|p.M175R|1|0.23|ENSG00000100485|chr14:50188687-50188687|A/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2705078125	2	512.268227	1022.5219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.06	1	104.06	103.56	104.56	0								0	0	0	0.38822	1	26765	26765		2.5775	0.27475	1		+		1520	12993	1014	1023	2131	2131					0.011541140541226014
DFSYNLELF	9	Unmodified	_DFSYNLELF_					0	0	0			REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.2800903320312	2	574.268947	1146.52334	0.33626	0.0001931	0.055532	3.1891E-05	0.39179	0.00022499	574.268911365933	90.986	1.3796	90.986	90.708	92.088	0					76	33	3	0	0	0	0.28587	1	22972	22972		8.5933	0.68312	1	3962900	+		1521	9168	1015	1024	2132	2132					-0.04405973376151451
DFTLEEWAL	9	Unmodified	_DFTLEEWAL_					0	0	0		ZNF57|p.T374Nfs*3|1|0.38|ENSG00000171970|chr19:2917739-2917749|TCACTTGGTCC/-|frameshift_variant;ENSG00000172000|ENST00000307635|ZNF556;nc|ENSG00000186300|Q8NEP9-2|ZNF555;ENSG00000171970|ENST00000306908|ZNF57;nc|ENSG00000186300|Q8NEP9-4|ZNF555;ENSG00000186300|ENST00000334241|ZNF555	ZNF57|p.T374Nfs*3|1|0.38|ENSG00000171970|chr19:2917739-2917749|TCACTTGGTCC/-|frameshift_variant	ZNF57|p.T374Nfs*3|1|0.38|ENSG00000171970|chr19:2917739-2917749|TCACTTGGTCC/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7949829101562	2	562.268947	1122.52334	0.53525	0.00030095	3.4326	0.00193	3.9678	0.002231	562.7725598408927	78.222	0.28885	78.252	78.112	78.4	0.030151					11	9	2	0	0	0	0.25281	1	18755	18755		6.7232	0.51738	1	28856			1522	4474	1016	1025	2133	2133					-0.03301973376164824
DFTRLNLL	8	Unmodified	_DFTRLNLL_					0	0	0		ENST00000609706.1_1_22:38244637-38244802:-|nuORF	ENST00000609706.1_1_22:38244637-38244802:-|nuORF	ENST00000609706.1_1_22:38244637-38244802:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7613220214844	2	496.282192	990.549831	-0.41509	-0.000206	-0.14725	-7.3076E-05	-0.56233	-0.00027908	496.28201745662267	42.11	0.63321	42.11	41.856	42.489	0					40	21	3	0	0	0	0.3576	1	8011	8011		7.9102	0	1	83194			1523	7325	1017	1026	2134	2134					0.05417760305840602
DFVASQEKGN	10	Unmodified	_DFVASQEKGN_					0	0	0			REV__FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	REV__FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.75830078125	2	547.759278	1093.504	0.48914	0.00026793	-1.4808	-0.00081113	-0.99167	-0.0005432	547.7582453196023	91.651	0.57885	91.651	91.348	91.927	0					86	21	6	0	0	0	0.39662	1	23023	23023		12.241	2.8575	1	686910	+		1524	8337	1018	1027	2135	2135					-0.03900929667042874
DFVIGTFIPL	10	Unmodified	_DFVIGTFIPL_					0	0	0		SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2	SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant	SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7737426757812	2	561.3157	1120.61685	0.46342	0.00026013	0.011696	6.5652E-06	0.47512	0.00026669	561.3154900968216	100.36	0.35902	100.36	100.21	100.57	0					28	20	2	0	0	0	0.31585	1	25695	25695		10.824	5.0921	1	33861			1525	668	1019	1028	2136	2136					0.06136370796957635
DFVIGTFIPL	10	Unmodified	_DFVIGTFIPL_					0	0	0		SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2	SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant	SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	561.3157	1120.61685	0.57229	0.00032124	-0.47918	-0.00026897	0.093108	5.2263E-05	561.8166721082207	100.6	0.063248	100.64	100.6	100.66	0.042839	0.13995	-0.0004487	NaN	10.824	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27256			1526	668	1019	1028							0.06136370796957635
DFVRMCLT	8	Unmodified	_DFVRMCLT_					0	0	0		nc|ENSG00000176601|Q56UN5-7|MAP3K19;nc|ENSG00000176601|Q56UN5-4|MAP3K19;nc|ENSG00000176601|Q56UN5-5|MAP3K19;nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19	nc|ENSG00000176601|Q56UN5-7|MAP3K19	nc|ENSG00000176601|Q56UN5-7|MAP3K19	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.704345703125	2	492.735706	983.456858	0.23918	0.00011785	-1.0123	-0.00049881	-0.77313	-0.00038095	492.73505233017266	36.284	0.36376	36.284	36.128	36.492	0					23	13	2	0	0	0	0.3576	1	6163	6163		4.756	2.1785	1	36669			1527	4668	1020	1029	2137	2137					-0.03553203743388167
DFWCDVVIADL	11	Unmodified	_DFWCDVVIADL_					0	0	0		SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant;ENSG00000198879|ENST00000397167|SFMBT2	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.8961181640625	2	648.302464	1294.59037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.89	1	105.92	105.42	106.42	0.029739								0	0	0	0.33835	1	27103	27103		1.3295	0	1				1528	5425	1021	1030	2138	2138					-0.04513686156701624
DFWFCFLF	8	Unmodified	_DFWFCFLF_					0	0	0		ENST00000367137.3_1_1:205760066-205760288:-|nuORF	ENST00000367137.3_1_1:205760066-205760288:-|nuORF	ENST00000367137.3_1_1:205760066-205760288:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7493896484375	2	562.749139	1123.48372	0.46995	0.00026447	0.079471	4.4722E-05	0.54942	0.00030919	562.7491858337789	102.37	0.46121	102.41	102.23	102.69	0.040909					70	33	3	0	0	0	0.52502	1	26116	26116		9.3474	0	1	173730			1529	6174	1022	1031	2139	2139					-0.07307771860564571
DFYLYLTI	8	Unmodified	_DFYLYLTI_					0	0	0			REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2734375	2	524.273501	1046.53245	-0.17455	-9.151E-05	-0.51868	-0.00027193	-0.69323	-0.00036344	524.2731656313051	40.132	0.38748	40.132	39.954	40.341	0					22	13	2	0	0	0	0.53858	1	7349	7349		2.3027	0	1	34380	+		1530	13094	1023	1032	2140	2140					0.01104419980174498
DFYLYLTI	8	Unmodified	_DFYLYLTI_					0	0	0			REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	524.273501	1046.53245	-0.17455	-9.151E-05	-0.51868	-0.00027193	-0.69323	-0.00036344	524.2731656313051	40.132	0.38748	40.132	39.954	40.341	0	0.1383	0.00011379	NaN	2.3027	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34380	+		1531	13094	1023	1032							0.01104419980174498
DFYLYLTI	8	Unmodified	_DFYLYLTI_					0	0	0			REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	524.273501	1046.53245	-0.051948	-2.7235E-05	-1.4374	-0.00075359	-1.4893	-0.00078083	524.2732731118119	39.767	0.2646	39.855	39.695	39.96	0.088566	-0.1383	-0.00084953	NaN	2.3027	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31990	+		1532	13094	1023	1032							0.01104419980174498
DFYYMAGNK	9	Unmodified	_DFYYMAGNK_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.771240234375	2	554.742042	1107.46953	0.28246	0.00015669	0.48907	0.00027131	0.77153	0.000428	554.7422253429638	86.466	0.28165	86.466	86.331	86.613	0					13	9	2	0	0	0	0.25051	1	21394	21394		7.9102	0	1	53440			1533	1169	1024	1033	2141	2141					-0.07990469079527429
DGEQDNYSYY	10	Unmodified	_DGEQDNYSYY_					0	0	0		tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.233642578125	2	627.23329	1252.45203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.949	1	36.949	36.449	37.449	0								0	0	0	0.33984	1	6373	6373		0.40072	0	1				1534	13683	1025	1034	2142	2142					-0.16410137871457664
DGEQDNYSYY	10	Unmodified	_DGEQDNYSYY_					0	0	0		tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.233642578125	2	627.23329	1252.45203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.037	1	36.119	35.619	36.619	0.081715								0	0	0	0.33984	1	5977	5977		0.40072	0	1				1535	13683	1025	1034	2143	2143					-0.16410137871457664
DGEQDNYSYY	10	Unmodified	_DGEQDNYSYY_					0	0	0		tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.2334594726562	2	627.23329	1252.45203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.237	1	36.318	35.818	36.818	0.081715								0	0	0	0.33984	1	6037	6037		0.40072	0	1				1536	13683	1025	1034	2144	2144					-0.16410137871457664
DGFPQLFHIE	10	Unmodified	_DGFPQLFHIE_					0	0	0			REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF	REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7791748046875	2	601.795663	1201.57677	0.31126	0.00018732	0.61803	0.00037193	0.9293	0.00055925	601.7952083351838	49.387	0.31091	49.387	49.223	49.534	0					18	10	3	0	0	0	0.41688	1	10146	10146		10.074	0	1	64116	+		1537	9193	1026	1035	2145	2145					-0.015951758736491684
DGINDVHLI	9	Unmodified	_DGINDVHLI_					0	0	0		tr|U7SNM2|U7SNM2_FUSNUMagnesiumtransportproteinCorAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=corAPE=3SV=1	tr|U7SNM2|U7SNM2_FUSNUMagnesiumtransportproteinCorAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=corAPE=3SV=1	tr|U7SNM2|U7SNM2_FUSNUMagnesiumtransportproteinCorAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=corAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.771728515625	2	498.261456	994.50836	0.25527	0.00012719	-0.19535	-9.7337E-05	0.059917	2.9854E-05	498.26361249173414	49.178	0.39506	49.178	48.945	49.34	0					25	13	3	0	0	0	0.26684	1	10024	10024		10.824	1.4765	1	44021			1538	13517	1027	1036	2146	2146					0.01088579546535584
DGPVFSRNPE	10	Unmodified	_DGPVFSRNPE_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2936401367188	2	559.26727	1116.51999	0.38886	0.00021748	-3.3906	-0.0018963	-3.0018	-0.0016788	559.7672841743745	56.166	0.56028	56.166	55.979	56.539	0					55	19	4	0	0	0	0.31565	1	12171	12171		12.241	2.0573	1	546450			1539	3730	1028	1037	2147	2147					-0.0336122343014722
DGQKDAAPRA	10	Unmodified	_DGQKDAAPRA_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.759033203125	2	514.759612	1027.50467	0.25214	0.00012979	-0.32346	-0.00016651	-0.071322	-3.6714E-05	514.7593744563437	16.776	0.25081	16.854	16.743	16.994	0.077806					69	31	3	0	0	0	0.46827	1	714	714		1.3295	0.72803	1	53567			1540	3663	1029	1038	2148	2148					-0.007980902273402535
DGRPELRGPGR	11	Unmodified	_DGRPELRGPGR_					0	0	0		nc|ENSG00000125733|Q15642-5|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;ENSG00000125733|ENST00000313244|TRIP10	nc|ENSG00000125733|Q15642-5|TRIP10	nc|ENSG00000125733|Q15642-5|TRIP10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.894775390625	3	403.886415	1208.63742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.616	1	28.616	28.116	29.116	0								0	0	0	0.33908	1	3891	3891		0.36667	0	1				1541	2307	1030	1039	2149	2149					0.0414435422931092
DGTLPDRFIHF	11	Unmodified	_DGTLPDRFIHF_					0	0	0			REV__nc|ENSG00000100170|P13866-2|SLC5A1	REV__nc|ENSG00000100170|P13866-2|SLC5A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.892333984375	3	439.891055	1316.65134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.768	1	66.768	66.268	67.268	0								0	0	0	0.33521	1	15425	15425		2.4348	0.18206	1		+		1542	8372	1031	1040	2150	2150					0.005675869377455456
DGVLCLADIL	10	Unmodified	_DGVLCLADIL_					0	0	0		nc|ENSG00000188487|Q1MX18-3|INSC;ENST00000447214.6_1_11:15209769-15267583:+|nuORF;nc|ENSG00000188487|Q1MX18-4|INSC;nc|ENSG00000188487|Q1MX18-6|INSC;ENSG00000188487|ENST00000379556|INSC;nc|ENSG00000188487|Q1MX18-5|INSC;nc|ENSG00000188487|Q1MX18|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2754516601562	2	516.275718	1030.53688	0.46336	0.00023922	0.087957	4.541E-05	0.55132	0.00028463	516.2755937352933	74.162	0.76865	74.211	73.988	74.757	0.048546					44	27	2	0	0	0	0.35104	1	17596	17596		17.113	4.5813	1	277290			1543	6549	1032	1041	2151	2151					0.022835611314576454
DGVLCLADIL	10	Unmodified	_DGVLCLADIL_					0	0	0		nc|ENSG00000188487|Q1MX18-3|INSC;ENST00000447214.6_1_11:15209769-15267583:+|nuORF;nc|ENSG00000188487|Q1MX18-4|INSC;nc|ENSG00000188487|Q1MX18-6|INSC;ENSG00000188487|ENST00000379556|INSC;nc|ENSG00000188487|Q1MX18-5|INSC;nc|ENSG00000188487|Q1MX18|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	516.275718	1030.53688	0.35007	0.00018073	0.41252	0.00021297	0.76258	0.0003937	516.2757589166011	74.241	0.6546	74.241	74.006	74.661	0	0.015034	0.00011688	NaN	17.113	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225650			1544	6549	1032	1041							0.022835611314576454
DGYEVENL	8	Unmodified	_DGYEVENL_					0	0	0		nc|ENSG00000185019|O94941-2|UBOX5;ENSG00000185019|ENST00000217173|UBOX5	nc|ENSG00000185019|O94941-2|UBOX5	nc|ENSG00000185019|O94941-2|UBOX5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7070617675781	2	469.708722	937.402892	-0.58004	-0.00027245	-2.4938	-0.0011714	-3.0738	-0.0014438	469.7075303480254	41.208	0.36033	41.208	41.02	41.38	0					18	12	2	0	0	0	0.53614	1	7669	7669		3.9444	1.3669	1	46028			1545	5005	1033	1042	2152	2152					-0.06831381369761402
DGYSIPFEVF	10	Unmodified	_DGYSIPFEVF_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.276123046875	2	587.276772	1172.53899	0.49707	0.00029192	-0.12913	-7.5836E-05	0.36794	0.00021608	587.2766040225295	102.03	0.42574	102.03	101.84	102.26	0					51	30	2	0	0	0	0.38912	1	26170	26170		13.042	0	1	198750			1546	13666	1034	1043	2153	2153					-0.040376868591238235
DGYSVSHQIS	10	Unmodified	_DGYSVSHQIS_					0	0	0		ENST00000493467.5_1_9:135785858-135804259:-|nuORF;nc|ENSG00000165699|Q92574-2|TSC1;ENSG00000165699|ENST00000298552|TSC1	ENST00000493467.5_1_9:135785858-135804259:-|nuORF	ENST00000493467.5_1_9:135785858-135804259:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7514038085938	2	546.751453	1091.48835	-0.094296	-5.1556E-05	0.48562	0.00026551	0.39132	0.00021396	546.751768625601	27.738	0.6722	27.821	27.632	28.304	0.082132					77	39	3	0	0	0	0.4101	1	3480	3480		10.8	2.644	1	73852			1547	4104	1035	1044	2154	2154					-0.05373216184079865
DHDYDTDEPF	10	Unmodified	_DHDYDTDEPF_					0	0	0			REV__ENSG00000142408|ENST00000270458|CACNG8	REV__ENSG00000142408|ENST00000270458|CACNG8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.23291015625	2	627.23329	1252.45203	0.0025969	1.6289E-06	-0.56011	-0.00035132	-0.55751	-0.00034969	627.2334837401567	33.144	1.3133	33.219	32.586	33.9	0.074322					164	57	4	0	0	0	0.47318	1	5253	5253		0.40072	0	1	128580	+		1548	9430	1036	1045	2155	2155					-0.164101378714804
DHILIAFSF	9	Unmodified	_DHILIAFSF_					0	0	0			REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2805786132812	2	531.784567	1061.55458	0.57893	0.00030786	-0.19444	-0.0001034	0.38449	0.00020446	531.7837414672481	77.962	0.64313	77.996	77.708	78.351	0.034485					42	21	3	0	0	0	0.21398	1	18649	18649		16.942	2.3606	1	158810	+		1549	8198	1037	1046	2156	2156					0.026266444486054752
DHIRRTMYW	9	Unmodified	_DHIRRTMYW_					0	0	0		nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2	nc|ENSG00000087303|Q14112-2|NID2	nc|ENSG00000087303|Q14112-2|NID2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.31201171875	2	639.314032	1276.61351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.706	1	56.772	56.272	57.272	0.066452								0	0	0	0.28631	1	12221	12221		1.8442	0.19162	1				1550	996	1038	1047	2157	2157					-0.013732025287026772
DHPNLIQR	8	Unmodified	_DHPNLIQR_					0	0	0		nc|ENSG00000188163|Q6J272-2|CIMIP2A;ENSG00000188163|ENST00000344774|FAM166A	nc|ENSG00000188163|Q6J272-2|CIMIP2A	nc|ENSG00000188163|Q6J272-2|CIMIP2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2539978027344	2	496.76724	991.519927	0.0033477	1.663E-06	1.2427	0.00061733	1.246	0.00061899	496.76699893221416	30.697	0.31046	30.772	30.655	30.966	0.075403					31	17	3	0	0	0	0.3576	1	4374	4374		6.7232	1.9672	1	22773			1551	5143	1039	1048	2158	2158					0.02382821360527032
DHSFWRRQ	8	Unmodified	_DHSFWRRQ_					0	0	0		ENST00000377298.8_1_1:9789586-9789634:-|nuORF	ENST00000377298.8_1_1:9789586-9789634:-|nuORF	ENST00000377298.8_1_1:9789586-9789634:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2752075195312	2	566.275764	1130.53697	0.0029275	1.6578E-06	1.0182	0.0005766	1.0212	0.00057825	566.2760860755637	34.855	0.43023	34.855	34.718	35.148	0					23	15	2	0	0	0	0.54097	1	5790	5790		0.69038	0	1	49300			1552	6256	1040	1049	2159	2159					-0.02307258033670223
DHSVRVLIS	9	Unmodified	_DHSVRVLIS_					0	0	0		ENST00000463900.5_1_2:74756150-74756756:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1	ENST00000463900.5_1_2:74756150-74756756:-|nuORF	ENST00000463900.5_1_2:74756150-74756756:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2902221679688	2	513.290548	1024.56654	-0.0051538	-2.6454E-06	0.054438	2.7943E-05	0.049285	2.5297E-05	513.2904486356914	33.608	1.0173	33.608	33.378	34.395	0					85	38	4	0	0	0	0.15282	1	5340	5340		24.021	4.7636	1	354730			1553	1898	1041	1050	2160	2160					0.05524261191817459
DHSWDYGF	8	Unmodified	_DHSWDYGF_					0	0	0			REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7013549804688	2	513.701232	1025.38791	0.22076	0.0001134	-0.15818	-8.1258E-05	0.062575	3.2145E-05	513.7010040378251	58.654	0.48636	58.725	58.533	59.02	0.070477					24	16	2	0	0	0	0.53771	1	12863	12863		2.8892	0	1	223660	+		1554	12921	1042	1051	2161	2161					-0.12376828447099797
DHWFWPERDWF	11	Unmodified	_DHWFWPERDWF_					0	0	0			REV__TLE6|p.K150R|1|0.17|ENSG00000104953|chr19:2987146-2987146|A/G|missense_variant	REV__TLE6|p.K150R|1|0.17|ENSG00000104953|chr19:2987146-2987146|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2530517578125	3	540.905476	1619.6946	0.60694	0.0003283	-1.0919	-0.00059062	-0.48496	-0.00026232	540.9041202036409	47.547	0.19878	47.63	47.489	47.687	0.082413					11	8	2	0	0	0	0.40824	1	9441	9441		2.4348	1.22	1	50655	+		1555	13028	1043	1052	2162	2162					-0.09046223284985899
DHWLWNDQW	9	Unmodified	_DHWLWNDQW_					0	0	0			REV__ENST00000431490.1_1_3:45201441-45201549:-|nuORF	REV__ENST00000431490.1_1_3:45201441-45201549:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.5312194824219	3	433.856233	1298.54687	0.33687	0.00014615	2.311	0.0010027	2.6479	0.0011488	433.85727587580845	48.817	0.43197	48.817	48.656	49.088	0					21	14	2	0	0	0	0.25974	1	9941	9941		0.96228	0	1	74907	+		1556	11851	1044	1053	2163	2163					-0.09046114818966089
DIASPTFRRY	10	Unmodified	_DIASPTFRRY_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.2156982421875	3	409.21565	1224.62512	-0.13152	-5.382E-05	-0.013623	-5.5748E-06	-0.14514	-5.9395E-05	409.2156717383023	21.752	0.86384	21.853	21.632	22.496	0.10178					247	83	4	0	0	0	0.4676	1	1811	1811		1.4551	0.24029	1	604670			1557	7458	1045	1054	2164	2164					0.021793177662630114
DIAVEIMRSIC	11	Unmodified	_DIAVEIMRSIC_					0	0	0		tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3016967773438	2	625.317591	1248.62063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.082	1	73.082	72.582	73.582	0								0	0	0	0.32709	1	17346	17346		5.2969	0.39987	1				1558	13485	1046	1055	2165	2165					0.0062634923688165145
DIAYLLIYM	9	Unmodified	_DIAYLLIYM_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7456665039062	2	557.796286	1113.57802	0.44501	0.00024822	0.0022066	1.2308E-06	0.44722	0.00024945	557.7963888525237	57.126	0.14103	57.126	57.046	57.187	0					6	4	2	0	0	0	0.2491	1	12493	12493		8.5933	0.68312	1	60348			1559	5277	1047	1056	2166	2166					0.025773221709187055
DICCQHLATL	10	Unmodified	_DICCQHLATL_					0	0	0			REV__ENSG00000101445|ENST00000299824|PPP1R16B	REV__ENSG00000101445|ENST00000299824|PPP1R16B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7627563476562	2	558.762452	1115.51035	0.72652	0.00040595	0.35831	0.00020021	1.0848	0.00060616	558.7625441788833	65.838	1.5756	65.905	65.663	67.238	0.066864					132	59	4	0	0	0	0.19399	1	15010	15010		34.402	3.1334	1	6729600	+		1560	8428	1048	1057	2167	2167					-0.04278451031541408
DICHFLDIE	9	Unmodified	_DICHFLDIE_					0	0	0			REV__nc|ENSG00000110958|Q15185-2|PTGES3	REV__nc|ENSG00000110958|Q15185-2|PTGES3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7577514648438	2	552.755149	1103.49575	0.69866	0.00038619	4.2584	0.0023539	4.9571	0.0027401	552.7569434678895	92.638	0.49969	92.638	92.351	92.851	0					29	18	2	0	0	0	0.18364	1	23320	23320		20.454	0.039092	1	178540	+		1561	8678	1049	1058	2168	2168					-0.051861999080074384
DICHFLDIE	9	Unmodified	_DICHFLDIE_					0	0	0			REV__nc|ENSG00000110958|Q15185-2|PTGES3	REV__nc|ENSG00000110958|Q15185-2|PTGES3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3004150390625	2	552.755149	1103.49575	0.69866	0.00038619	4.2584	0.0023539	4.9571	0.0027401	552.7569434678895	92.638	0.49969	92.638	92.351	92.851	0					29	18	2	0	0	0	0.2229	1	23346	23346		19.257	0	1	178540	+		1562	8678	1049	1058	2169	2169					-0.051861999080074384
DICHFLDIE	9	Unmodified	_DICHFLDIE_					0	0	0			REV__nc|ENSG00000110958|Q15185-2|PTGES3	REV__nc|ENSG00000110958|Q15185-2|PTGES3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7571411132812	2	552.755149	1103.49575	0.74818	0.00041356	3.418	0.0018893	4.1661	0.0023029	552.7567686040949	92.686	0.48894	92.722	92.402	92.891	0.036522					33	17	3	0	0	0	0.10067	2	23136	23119;23136		32.305	10.769	1	193370	+		1563	8678	1049	1058	2170;2171	2171					-0.051861999080074384
DICHFLDIE	9	Unmodified	_DICHFLDIE_					0	0	0			REV__nc|ENSG00000110958|Q15185-2|PTGES3	REV__nc|ENSG00000110958|Q15185-2|PTGES3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.301025390625	2	552.755149	1103.49575	0.74818	0.00041356	3.418	0.0018893	4.1661	0.0023029	552.7567686040949	92.686	0.48894	92.722	92.402	92.891	0.036522					33	17	3	0	0	0	0.19376	1	23169	23169		25.399	8.2864	1	193370	+		1564	8678	1049	1058	2172	2172					-0.051861999080074384
DICISCFVHN	10	Unmodified	_DICISCFVHN_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.2705688476562	2	575.754627	1149.4947	0.16569	9.5399E-05	2.8454	0.0016382	3.011	0.0017336	575.7562681211775	51.163	0.37639	51.163	50.981	51.358	0					30	12	3	0	0	0	0.30149	1	10704	10704		14.838	0	1	108580	+		1565	9667	1050	1059	2173	2173					-0.07406737548581077
DICSICQAEFQ	11	Unmodified	_DICSICQAEFQ_					0	0	0		ENST00000486103.6_1_17:58031378-58035783:-|nuORF;ENSG00000189050|ENST00000305783|RNFT1	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5150451660156	3	419.514379	1255.52131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.183	1	73.236	72.736	73.736	0.052574								0	0	0	0.33835	1	17223	17223		0.45452	0	1				1566	5187	1051	1060	2174	2174					-0.09623093447908104
DIEGPEGKL	9	Unmodified	_DIEGPEGKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2478942871094	2	479.248015	956.481476	-0.40985	-0.00019642	0.11775	5.643E-05	-0.29211	-0.00013999	479.2480048568118	44.184	0.38097	44.184	44.006	44.387	0					19	12	2	0	0	0	0.22083	1	8585	8585		16.149	3.1066	1	70077			1567	2279	1052	1061	2175	2175					0.001494709353323742
DIEINGVF	8	Unmodified	_DIEINGVF_					0	0	0		nc|ENSG00000021461|Q9HB55-6|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43	nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-6|CYP3A43	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.5426330566406	2	453.732	905.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.947	1	57.947	57.447	58.447	0								0	0	0	0.38822	1	12736	12736		5.7604	0.52976	1				1568	7445	1053	1062	2176	2176					-0.007058967477973965
DIELASLLVF	10	Unmodified	_DIELASLLVF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2991943359375	2	560.31844	1118.62233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.96	1	101	100.5	101.5	0.042839								0	0	0	0.33443	1	25684	25684		6.7232	1.4925	1				1569	5330	1054	1063	2177	2177					0.06776049588756905
DIERFCAC	8	Unmodified	_DIERFCAC_					0	0	0		ENST00000598598.5_1_19:39412871-39421400:-|nuORF;ENSG00000104835|ENST00000221431|SARS2;nc|ENSG00000104835|Q9NP81-2|SARS2	ENST00000598598.5_1_19:39412871-39421400:-|nuORF	ENST00000598598.5_1_19:39412871-39421400:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2664794921875	2	478.701863	955.389172	-0.24158	-0.00011565	-0.69405	-0.00033224	-0.93564	-0.00044789	478.7014221908184	34.333	0.35229	34.333	34.153	34.505	0					27	14	3	0	0	0	0.3576	1	5581	5581		5.2307	3.3864	1	33192			1570	1435	1055	1064	2178	2178					-0.0903065367419913
DIERFCAC	8	Unmodified	_DIERFCAC_					0	0	0		ENST00000598598.5_1_19:39412871-39421400:-|nuORF;ENSG00000104835|ENST00000221431|SARS2;nc|ENSG00000104835|Q9NP81-2|SARS2	ENST00000598598.5_1_19:39412871-39421400:-|nuORF	ENST00000598598.5_1_19:39412871-39421400:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2666931152344	2	478.701863	955.389172	-0.21485	-0.00010285	-0.73357	-0.00035116	-0.94842	-0.00045401	478.70137459554496	34.27	0.31667	34.347	34.15	34.466	0.076244					22	12	2	0	0	0	0.3576	1	5448	5448		2.3027	1.5091	1	34827			1571	1435	1055	1064	2179	2179					-0.0903065367419913
DIFDAAFDFL	10	Unmodified	_DIFDAAFDFL_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-2|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-2|SLC45A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.77880859375	2	587.276772	1172.53899	0.49707	0.00029192	-0.12913	-7.5836E-05	0.36794	0.00021608	587.2766040225295	102.03	0.42574	102.03	101.84	102.26	0					51	30	2	0	0	0	0.35104	1	26173	26173		17.113	4.0704	1	198750	+		1572	9984	1056	1065	2180	2180					-0.04037686859101086
DIFDAAFDFL	10	Unmodified	_DIFDAAFDFL_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-2|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-2|SLC45A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.2769775390625	2	587.276772	1172.53899	0.74724	0.00043884	-0.42953	-0.00025226	0.3177	0.00018658	587.2764453065595	101.93	0.47212	101.98	101.82	102.29	0.042656					80	39	3	0	0	0	0.34138	2	25959	25959;25995		18.146	5.1039	1	149700	+		1573	9984	1056	1065	2181;2182	2181					-0.04037686859101086
DIFFFNRN	8	Unmodified	_DIFFFNRN_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.308349609375	2	536.764166	1071.51378	0.70799	0.00038003	-2.79	-0.0014976	-2.082	-0.0011176	537.2654023804807	53.907	0.37675	53.972	53.74	54.117	0.065128					14	13	2	0	0	0	0.35759	1	11340	11340		12.532	3.1484	1	36761			1574	4696	1057	1066	2183	2183					-0.0191169687097954
DIFNFKTF	8	Unmodified	_DIFNFKTF_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant;ENSG00000168356|ENST00000302328|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.277099609375	2	516.263468	1030.51238	0.18745	9.6775E-05	-4.2788	-0.002209	-4.0913	-0.0021122	516.2608375274195	35.655	0.56644	35.655	35.51	36.077	0					42	21	3	0	0	0	0.35759	1	5998	5998		14.838	0	1	85127			1575	4281	1058	1067	2184	2184					-0.0016533095977138146
DIFNTSLVF	9	Unmodified	_DIFNTSLVF_					0	0	0		nc|ENSG00000172548|Q0D2K0-2|NIPAL4;chr5:157463333-157468722|434|15.42|0.87|4.14|+|ENST00000435489|NIPAL4,NIPAL4;ENSG00000172548|ENST00000311946|NIPAL4	nc|ENSG00000172548|Q0D2K0-2|NIPAL4	nc|ENSG00000172548|Q0D2K0-2|NIPAL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2568359375	2	528.274032	1054.53351	0.52495	0.00027732	-0.29309	-0.00015483	0.23186	0.00012249	528.2739517128699	81.158	0.17542	81.182	81.11	81.285	0.023605					6	5	2	0	0	0	0.28587	1	19661	19661		8.5933	1.304	1	46089			1576	169	1059	1068	2185	2185					0.008426343491237276
DIFSESETR	9	Unmodified	_DIFSESETR_					0	0	0		ENST00000481448.5_1_21:35897903-35899047:-|nuORF;nc|ENSG00000159200|P53805-2|RCAN1	ENST00000481448.5_1_21:35897903-35899047:-|nuORF	ENST00000481448.5_1_21:35897903-35899047:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2514038085938	2	542.251286	1082.48802	0.103	5.5852E-05	-0.064203	-3.4814E-05	0.038797	2.1037E-05	542.2510570667866	44.426	0.40025	44.514	44.304	44.705	0.088093					18	13	2	0	0	0	0.2546	1	8504	8504		12.241	3.6474	1	38085			1577	6751	1060	1069	2186	2186					-0.04992635903954579
DIFSEVVGR	9	Unmodified	_DIFSEVVGR_					0	0	0		nc|ENSG00000123064|Q8TDD1-2|DDX54;ENSG00000123064|ENST00000306014|DDX54;ENST00000550016.5_1_12:113600735-113603481:-|nuORF	nc|ENSG00000123064|Q8TDD1-2|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.3183898925781	2	511.269281	1020.52401	0.46704	0.00023878	-1.1359	-0.00058073	-0.66882	-0.00034195	511.2683529615749	67.672	0.44049	67.672	67.285	67.725	0					23	16	2	0	0	0	0.089428	1	15651	15651		47.749	18.667	1	107870			1578	2202	1061	1070	2187	2187					0.014568660635859487
DIFTLCALFF	10	Unmodified	_DIFTLCALFF_					0	0	0			REV__OR4A5|p.S65T|1|0.34|ENSG00000221840|chr11:54707077-54707077|T/A|missense_variant	REV__OR4A5|p.S65T|1|0.34|ENSG00000221840|chr11:54707077-54707077|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2838134765625	2	595.301736	1188.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.17	1	104.21	103.71	104.71	0.03791								0	0	0	0.33443	1	26624	26624		6.7232	2.7788	1		+		1579	12941	1062	1071	2188	2188					0.0021672454518011364
DIFYKAIQK	9	Unmodified	_DIFYKAIQK_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF;ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7940673828125	2	563.318774	1124.623	0.0097882	5.5139E-06	2.6777	0.0015084	2.6875	0.0015139	564.3239206781869	43.745	0.44176	43.834	43.658	44.1	0.088924					56	15	5	0	0	0	0.15403	1	8306	8306		34.402	13.948	1	187000			1580	264	1063	1072	2189	2189					0.0656688902845417
DIHGPDAKL	9	Unmodified	_DIHGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.25640869140625	2	483.256174	964.497795	-0.24135	-0.00011663	0.69407	0.00033541	0.45272	0.00021878	483.2564694697888	34.392	0.62659	34.392	34.091	34.718	0					44	24	2	0	0	0	0.047066	2	5591	5591;5637		43.982	10.537	1	105020			1581	2279	1064	1073	2190;2191	2190					0.01412596892100737
DIHGPDAKL	9	Unmodified	_DIHGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.255859375	2	483.256174	964.497795	-0.19654	-9.498E-05	0.71716	0.00034657	0.52062	0.00025159	483.2565071011067	34.348	0.56844	34.425	34.15	34.718	0.076244					38	24	2	0	0	0	0.18398	2	5446	5446;5489		20.415	8.1739	1	77944			1582	2279	1064	1073	2192;2193	2192					0.01412596892100737
DIHVTCEVL	9	Unmodified	_DIHVTCEVL_					0	0	0			REV__ENST00000463943.1_1_20:49457108-49457342:+|nuORF	REV__ENST00000463943.1_1_20:49457108-49457342:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2772827148438	2	514.757692	1027.50083	0.41204	0.0002121	0.86166	0.00044355	1.2737	0.00065565	514.7580286018034	91.073	0.67288	91.073	90.834	91.507	0					52	23	3	0	0	0	0.22344	1	22865	22865		15.847	0	1	779300	+		1583	11979	1065	1074	2194	2194					-0.01181896045409303
DIHVTCEVL	9	Unmodified	_DIHVTCEVL_					0	0	0			REV__ENST00000463943.1_1_20:49457108-49457342:+|nuORF	REV__ENST00000463943.1_1_20:49457108-49457342:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2772827148438	2	514.757692	1027.50083	0.158	8.1332E-05	1.099	0.00056572	1.257	0.00064705	514.7581401180581	90.996	0.7009	91.032	90.797	91.498	0.035446					62	24	4	0	0	0	0.22344	1	22705	22705		15.847	0	1	849510	+		1584	11979	1065	1074	2195	2195					-0.01181896045409303
DIIEPLLSL	9	Unmodified	_DIIEPLLSL_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-4|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.79949951171875	2	506.799883	1011.58521	0.58839	0.00029819	-0.44143	-0.00022371	0.14696	7.448E-05	506.7995665606422	85.452	0.31616	85.477	85.314	85.631	0.025169					21	13	2	0	0	0	0.27332	1	20988	20988		10.074	0	1	101160			1585	7166	1066	1075	2196	2196					0.07988378043023658
DIISSQQEIN	10	Unmodified	_DIISSQQEIN_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7871704101562	2	573.785492	1145.55643	-0.12605	-7.2327E-05	0.67695	0.00038842	0.5509	0.0003161	573.7857767115835	32.242	0.56441	32.242	32	32.564	0					49	22	3	0	0	0	0.27736	2	4932	4932;5018		24.991	0	1	169000			1586	1219	1067	1076	2197;2198	2197					-0.010523913240831462
DIISSQQEIN	10	Unmodified	_DIISSQQEIN_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.78662109375	2	573.785492	1145.55643	-0.068136	-3.9095E-05	0.61757	0.00035435	0.54944	0.00031526	573.7857995257793	32.181	0.46056	32.254	32.074	32.534	0.073784					60	22	4	0	0	0	0.43503	1	4793	4793		7.609	0	1	122160			1587	1219	1067	1076	2199	2199					-0.010523913240831462
DILADSRHLW	10	Unmodified	_DILADSRHLW_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.21539306640625	3	409.21565	1224.62512	-0.075027	-3.0702E-05	-0.18	-7.366E-05	-0.25503	-0.00010436	409.21555025885135	21.943	1.0142	21.943	21.718	22.732	0					269	88	4	0	0	0	0.46608	1	2064	2064		1.7423	0.52744	1	448380			1588	1894	1068	1077	2200	2200					0.021793177662630114
DILDYYEASL	10	Unmodified	_DILDYYEASL_					0	0	0		nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.28564453125	2	601.284794	1200.55504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.684	1	18.684	18.184	19.184	0								0	0	0	0.33892	1	1180	1180		1.4819	0	1				1589	7503	1069	1078	2201	2201					-0.037220254128669694
DILKYLIKW	9	Unmodified	_DILKYLIKW_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;nc|ENSG00000011114|Q9P203-5|BTBD7;ENSG00000011114|ENST00000334746|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.7976684570312	2	596.360442	1190.70633	0.18154	0.00010826	0.27749	0.00016548	0.45903	0.00027375	596.3605595362646	90.538	0.26855	90.538	90.439	90.708	0					13	9	2	0	0	0	0.25845	1	22678	22678		2.0598	0.21551	1	68476			1590	423	1070	1079	2202	2202					0.11860625476310815
DILYAMYV	8	Unmodified	_DILYAMYV_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.24627685546875	2	494.246429	986.478305	-0.20793	-0.00010277	-0.46667	-0.00023065	-0.6746	-0.00033342	494.2461763539762	19.191	0.47486	19.191	19.025	19.5	0					114	54	3	0	0	0	0.53771	2	1277	1277;1305		2.8892	0.31174	1	64081			1591	4440	1071	1080	2203;2204	2203					-0.015474954430260368
DILYAMYV	8	Unmodified	_DILYAMYV_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2461242675781	2	494.246429	986.478305	0.23218	0.00011476	-0.70401	-0.00034796	-0.47183	-0.0002332	494.2459879024101	19.082	0.28329	19.171	19.051	19.335	0.089705					54	31	2	0	0	0	0.53771	1	1186	1186		2.8892	0.31174	1	37892			1592	4440	1071	1080	2205	2205					-0.015474954430260368
DINDHIPIF	9	Unmodified	_DINDHIPIF_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.8079223632812	2	542.277106	1082.53966	0.38396	0.00020821	0.50529	0.00027401	0.88925	0.00048222	542.2773248128976	82.829	0.53716	82.851	82.563	83.1	0.021744					36	18	3	0	0	0	0.2491	1	20181	20181		4.756	0	1	133530			1593	394	1072	1081	2206	2206					0.0016915258061089844
DINHYTKV	8	Unmodified	_DINHYTKV_					0	0	0		ENST00000495039.1_1_7:92888888-92902105:+|nuORF;nc|ENSG00000004766|Q96JG6-2|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50	ENST00000495039.1_1_7:92888888-92902105:+|nuORF	ENST00000495039.1_1_7:92888888-92902105:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2203369140625	2	495.256174	988.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.187	1	78.187	77.687	78.687	0								0	0	0	0.38822	1	18911	18911		1.8442	0.36234	1				1594	337	1073	1082	2207	2207					0.0030859689210274155
DINPYENDI	9	Unmodified	_DINPYENDI_					0	0	0			REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2943725585938	2	546.745836	1091.47712	0.29739	0.0001626	0.14297	7.8167E-05	0.44036	0.00024077	546.7458400856576	51.625	0.91053	51.695	51.18	52.091	0.069874					48	33	2	0	0	0	0.25376	1	10567	10567		6.2058	0	1	62539	+		1595	13234	1074	1083	2208	2208					-0.06496038278237393
DINQIHRKL	9	Unmodified	_DINQIHRKL_					0	0	0			REV__APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	REV__APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2655029296875	2	568.830372	1135.64619	0.23166	0.00013178	0.58147	0.00033076	0.81313	0.00046253	568.830825366156	58.054	0.21977	58.122	57.941	58.16	0.068375					12	7	2	0	0	0	0.2418	1	12618	12618		9.3831	0	1	220120	+		1596	7715	1075	1084	2209	2209					0.08379327865804953
DIPYIISSF	9	Unmodified	_DIPYIISSF_					0	0	0		LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|23|1|anti-sense	LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|23|1|anti-sense	LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|23|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7662353515625	2	527.776408	1053.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.597	1	53.663	53.163	54.163	0.06543								0	0	0	0.25692	1	11272	11272		7.9102	1.5561	1				1597	7423	1076	1085	2210	2210					0.01363518491848481
DIRDVIKR	8	Unmodified	_DIRDVIKR_					0	0	0			REV__nc|ENSG00000049449|Q15293-2|RCN1	REV__nc|ENSG00000049449|Q15293-2|RCN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2745666503906	2	507.806365	1013.59818	0.090042	4.5724E-05	-0.1576	-8.0029E-05	-0.067556	-3.4305E-05	507.8064227012476	49.259	0.32878	49.335	49.155	49.484	0.076607					17	11	2	0	0	0	0.3576	1	9938	9938		6.2058	0.97511	1	55319	+		1598	12747	1077	1086	2211	2211					0.09192253945752782
DISPPIFRR	9	Unmodified	_DISPPIFRR_					0	0	0		ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA	ENSG00000155926|ENST00000338087|SLA	ENSG00000155926|ENST00000338087|SLA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8143920898438	2	550.81419	1099.61383	0.44892	0.00024727	-0.20626	-0.00011361	0.24266	0.00013366	550.8140764516529	47.757	0.87465	47.757	47.436	48.311	0					65	29	3	0	0	0	0.026209	2	9618	9618;9662		53.833	28.433	1	311390			1599	3601	1078	1087	2212;2213	2212					0.06800540462791105
DISPPIFRR	9	Unmodified	_DISPPIFRR_					0	0	0		ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA	ENSG00000155926|ENST00000338087|SLA	ENSG00000155926|ENST00000338087|SLA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8145141601562	2	550.81419	1099.61383	0.65427	0.00036038	-0.22418	-0.00012348	0.43009	0.0002369	550.8140756622272	47.625	0.63372	47.705	47.428	48.062	0.080029					61	24	3	0	0	0	0.03472	2	9487	9435;9487		47.749	22.837	1	281160			1600	3601	1078	1087	2214;2215	2215					0.06800540462791105
DITFVFYK	8	Unmodified	_DITFVFYK_					0	0	0			REV__tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	REV__tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3146362304688	2	516.773668	1031.53278	0.53556	0.00027676	-0.28259	-0.00014603	0.25297	0.00013073	516.7736181815576	93.163	0.84043	93.2	92.926	93.766	0.037369					61	35	2	0	0	0	0.35759	1	23456	23456		11.64	1.4569	1	380010	+		1601	13066	1079	1088	2216	2216					0.018278397000358382
DIVGDTAPPD	10	Unmodified	_DIVGDTAPPD_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.28961181640625	2	500.235104	998.455655	0.08979	4.4916E-05	0.68754	0.00034393	0.77733	0.00038885	500.2354397047313	45.837	0.5491	45.922	45.638	46.187	0.085617					28	21	2	0	0	0	0.29345	1	8880	8880		8.7454	0	1	66558			1602	1519	1080	1089	2217	2217					-0.0436342330693833
DIVKGDPEL	9	Unmodified	_DIVKGDPEL_					0	0	0		ENSG00000108839|ENST00000251535|ALOX12;MINK1-ALOX12|1|fusion	ENSG00000108839|ENST00000251535|ALOX12	ENSG00000108839|ENST00000251535|ALOX12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2635192871094	2	493.263665	984.512776	0.51255	0.00025282	-0.50112	-0.00024719	0.011423	5.6344E-06	493.2633155083214	47.359	0.56271	47.359	47.144	47.707	0					44	18	3	0	0	0	0.034936	1	9503	9503		47.594	9.4188	1	398480			1603	1609	1081	1090	2218	2218					0.01990043969431099
DIVKGDPEL	9	Unmodified	_DIVKGDPEL_					0	0	0		ENSG00000108839|ENST00000251535|ALOX12;MINK1-ALOX12|1|fusion	ENSG00000108839|ENST00000251535|ALOX12	ENSG00000108839|ENST00000251535|ALOX12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2638244628906	2	493.263665	984.512776	0.46743	0.00023056	-0.08701	-4.2919E-05	0.38042	0.00018765	493.26346519962095	47.234	0.51505	47.317	47.151	47.666	0.083096					42	20	3	0	0	0	0.029591	2	9343	9343;9386		51.415	13.24	1	269900			1604	1609	1081	1090	2219;2220	2219					0.01990043969431099
DIYSHWFD	8	Unmodified	_DIYSHWFD_					0	0	0			REV__ENSG00000086300|ENST00000338523|SNX10	REV__ENSG00000086300|ENST00000338523|SNX10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7467041015625	2	541.732532	1081.45051	-0.14975	-8.1125E-05	-0.49585	-0.00026862	-0.6456	-0.00034974	541.7322392645412	26.06	1.1527	26.06	25.587	26.739	0					126	88	2	0	0	0	0.3576	1	3032	3032		8.5933	8.5933	1	31948	+		1605	8272	1082	1091	2221	2221					-0.08695682378902347
DKDDELSF	8	Unmodified	_DKDDELSF_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7135314941406	2	484.714005	967.413456	-0.25351	-0.00012288	-0.78147	-0.00037879	-1.035	-0.00050167	484.7137562554165	59.087	0.5619	59.087	58.846	59.408	0					34	20	2	0	0	0	0.25696	1	13105	13105		37.974	0	1	211340			1606	2805	1083	1092	2222	2222					-0.07155398715337924
DKDETGAYL	9	Unmodified	_DKDETGAYL_					0	0	0		ENST00000570005.5_1_16:2732549-2747193:+|nuORF;ENSG00000167977|ENST00000301738|KCTD5;ENSG00000180901|ENST00000322444|KCTD2	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.23382568359375	2	506.235104	1010.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.258	1	58.328	57.828	58.828	0.070477								0	0	0	0.25287	1	12692	12692		8.7454	0.15213	1				1607	4246	1084	1093	2223	2223					-0.04915423306954381
DKDQLVLRT	9	Unmodified	_DKDQLVLRT_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.79443359375	2	544.308938	1086.60332	-0.46789	-0.00025468	-0.58487	-0.00031835	-1.0528	-0.00057303	544.3087192323263	41.332	0.34828	41.332	41.172	41.52	0					14	11	2	0	0	0	0.25699	1	7699	7699		3.5965	0.60125	1	25109			1608	3641	1085	1094	2224	2224					0.06348513017701407
DKEMKGWTAK	10	Unmodified	_DKEMKGWTAK_					0	0	0			REV__ENST00000311481.10_1_11:66044719-66044914:+|nuORF	REV__ENST00000311481.10_1_11:66044719-66044914:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7673950195312	2	597.302798	1192.59104	0.082708	4.9402E-05	-2.8914	-0.0017271	-2.8087	-0.0016777	597.3012809569759	39.019	0.34663	39.019	38.89	39.237	0					15	12	2	0	0	0	0.31811	1	6959	6959		2.9952	0.93549	1	25654	+		1609	11374	1086	1095	2225	2225					0.00245153283003674
DKKGSLGH	8	Unmodified	_DKKGSLGH_					0	0	0			REV__ENST00000480100.3_1_9:140000303-140000768:+|nuORF	REV__ENST00000480100.3_1_9:140000303-140000768:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.2192687988281	2	421.229959	840.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.955	1	20.05	19.55	20.55	0.095232								0	0	0	0.38822	1	1390	1390		0.79363	0	1		+		1610	10425	1087	1096	2226	2226					0.018760585491349957
DKKIRRLMFPK	11	Unmodified	_DKKIRRLMFPK_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.9593505859375	3	477.958746	1430.85441	-0.066047	-3.1568E-05	1.1763	0.00056221	1.1102	0.00053064	477.95932004132203	95.401	0.42526	95.44	95.115	95.54	0.038872					30	17	2	0	0	0	0.41713	1	23994	23994		0.40827	0.31342	1	211650	+		1611	9026	1088	1097	2227	2227					0.15621613458483807
DKKIRRLMFPK	11	Unmodified	_DKKIRRLMFPK_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	477.958746	1430.85441	-0.001158	-5.5347E-07	1.1729	0.00056059	1.1717	0.00056004	478.2937679735038	95.355	0.32147	95.355	95.118	95.439	0	-0.042567	-3.9434E-06	NaN	0.40827	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127040	+		1612	9026	1088	1097							0.15621613458483807
DKKIRRLMFPK	11	Unmodified	_DKKIRRLMFPK_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	477.958746	1430.85441	-0.066047	-3.1568E-05	1.1763	0.00056221	1.1102	0.00053064	477.95932004132203	95.401	0.42526	95.44	95.115	95.54	0.038872	0.042567	9.061E-07	NaN	0.40827	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211650	+		1613	9026	1088	1097							0.15621613458483807
DKLDSHQGFVY	11	Unmodified	_DKLDSHQGFVY_					0	0	0		ENST00000466787.1_1_21:40763088-40763391:+|nuORF	ENST00000466787.1_1_21:40763088-40763391:+|nuORF	ENST00000466787.1_1_21:40763088-40763391:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2139587402344	3	436.878815	1307.61462	0.66477	0.00029042	1.8049	0.00078852	2.4697	0.0010789	437.21428438888034	97.062	1.0207	97.062	96.908	97.929	0					69	48	2	0	0	0	0.311	1	24816	24816		0.50596	0.27011	1	97196			1614	6641	1089	1098	2228	2228					-0.026887096787959308
DKRENPLLPE	10	Unmodified	_DKRENPLLPE_					0	0	0		ENST00000532383.5_1_11:10825358-10825926:-|nuORF;EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	ENST00000532383.5_1_11:10825358-10825926:-|nuORF	ENST00000532383.5_1_11:10825358-10825926:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8281860351562	2	605.824952	1209.63535	0.87778	0.00053178	3.798	0.0023009	4.6758	0.0028327	605.8272709477599	97.942	0.33005	97.942	97.741	98.071	0					25	17	2	0	0	0	0.45313	2	24910	24910;24917		4.1895	0.90819	1	61906			1615	315	1090	1099	2229;2230	2229					0.03891880700825823
DKRKQQKCLE	10	Unmodified	_DKRKQQKCLE_					0	0	0			REV__ENSG00000166352|ENST00000334307|IFTAP	REV__ENSG00000166352|ENST00000334307|IFTAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.3436889648438	2	638.345529	1274.6765	0.7116	0.00045425	-2.2569	-0.0014407	-1.5453	-0.0009864	638.8454425206186	84.657	0.30441	84.657	84.561	84.865	0					26	15	2	0	0	0	0.41617	1	20883	20883		10.151	0.76745	1	318390	+		1616	10075	1091	1100	2231	2231					0.05015318468667829
DKWNDKPKNQ	10	Unmodified	_DKWNDKPKNQ_					0	0	0		CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant;ENSG00000198824|ENST00000361283|CHAMP1	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.8033447265625	3	424.882559	1271.62585	0.058016	2.465E-05	-2.6911	-0.0011434	-2.6331	-0.0011188	425.21433310856514	12.149	0.18117	12.211	12.084	12.265	0.061734					32	23	2	0	0	0	0.47119	1	7	7		0.77653	0.54069	1	17961			1617	131	1092	1101	2232	2232					0.0009011241531879932
DLADYFEKF	9	Unmodified	_DLADYFEKF_					0	0	0		tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1	tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1	tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2688598632812	2	574.268947	1146.52334	0.45377	0.00026059	-0.12997	-7.464E-05	0.32379	0.00018595	574.2685185519514	63.056	1.7628	63.056	62.722	64.485	0					156	64	4	0	0	0	0.10833	2	14379	14379;14437		30.637	0	1	908210			1618	13441	1093	1102	2233;2234	2233					-0.04405973376151451
DLADYFEKF	9	Unmodified	_DLADYFEKF_					0	0	0		tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1	tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1	tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2689819335938	2	574.268947	1146.52334	0.39697	0.00022797	-0.10643	-6.1119E-05	0.29054	0.00016685	574.2686568128314	62.942	1.823	63.014	62.659	64.482	0.072701					149	68	3	0	0	0	0.047633	3	14105	14105;14148;14197		43.858	0	1	1023300			1619	13441	1093	1102	2235;2236;2237	2235					-0.04405973376151451
DLAKSHEYQ	9	Unmodified	_DLAKSHEYQ_					0	0	0		chr12:8852012-8852216|134|13.73|0.71|4.27|+|0|A2ML1,None|1;nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1	chr12:8852012-8852216|134|13.73|0.71|4.27|+|0|A2ML1,None|1	chr12:8852012-8852216|134|13.73|0.71|4.27|+|0|A2ML1,None|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2455444335938	2	545.76182	1089.50909	0.19518	0.00010652	-0.28445	-0.00015524	-0.089267	-4.8718E-05	545.7615801873335	39.01	0.96766	39.01	38.514	39.482	0					74	36	3	0	0	0	0.32375	1	6892	6892		3.5965	0	1	108280			1620	152	1094	1103	2238	2238					-0.03208625804450094
DLDCLLQQL	9	Unmodified	_DLDCLLQQL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3181762695312	2	530.7708	1059.52705	0.34618	0.00018374	0.42881	0.0002276	0.77499	0.00041134	530.7710094591736	89.094	0.27322	89.126	88.977	89.25	0.032265					13	10	2	0	0	0	0.19376	1	22080	22080		25.399	0	1	31987			1621	4777	1095	1104	2239	2239					-0.00033626873914727184
DLDDSTDT	8	Unmodified	_DLDDSTDT_					0	0	0			REV__nc|ENSG00000154153|Q9H6L5-2|RETREG1	REV__nc|ENSG00000154153|Q9H6L5-2|RETREG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.79931640625	2	441.17217	880.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.14	1	105.14	104.64	105.64	0								0	0	0	0.38822	1	27075	27075		2.3027	1.5091	1		+		1622	9704	1096	1105	2240	2240					-0.11516554883041863
DLDLEPAEL	9	Unmodified	_DLDLEPAEL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7530212402344	2	507.75313	1013.49171	0.44008	0.00022345	-0.79578	-0.00040406	-0.3557	-0.00018061	507.75273191805155	60.241	0.55229	60.241	60.091	60.643	0					51	19	4	0	0	0	0.18364	1	13468	13468		20.454	0	1	88222	+		1623	9733	1097	1106	2241	2241					-0.014499661300874322
DLDLLPPPPPP	11	Unmodified	_DLDLLPPPPPP_					0	0	0		nc|ENSG00000162458|Q8WUP2-2|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1	nc|ENSG00000162458|Q8WUP2-2|FBLIM1	nc|ENSG00000162458|Q8WUP2-2|FBLIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8226318359375	2	585.823889	1169.63323	0.40295	0.00023606	-3.2622	-0.0019111	-2.8593	-0.001675	586.3236119137399	50.869	0.32747	50.869	50.707	51.034	0					15	10	2	0	0	0	0.29897	1	10585	10585		18.146	1.5805	1	88416			1624	3827	1098	1107	2242	2242					0.05519451963027677
DLDPLTNIT	9	Unmodified	_DLDPLTNIT_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.769287109375	2	501.261122	1000.50769	0.50777	0.00025452	-0.39641	-0.00019871	0.11135	5.5818E-05	501.26090957775887	63.952	0.40477	63.952	63.793	64.198	0					24	14	2	0	0	0	0.24791	1	14618	14618		10.074	0.6908	1	96062			1625	3360	1099	1108	2243	2243					0.007457401067881619
DLDRYAIAL	9	Unmodified	_DLDRYAIAL_					0	0	0			REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2848510742188	2	525.284931	1048.55531	0.16175	8.4967E-05	0.036913	1.939E-05	0.19867	0.00010436	525.2848831061536	50.217	0.63305	50.217	49.906	50.539	0					63	22	4	0	0	0	0.021119	1	10408	10408		57.471	9.1255	1	695660	+		1626	8492	1100	1109	2244	2244					0.032974390976505674
DLEEHWQRH	9	Unmodified	_DLEEHWQRH_					0	0	0		ENST00000492513.5_1_1:93073119-93091404:-|nuORF;nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5	ENST00000492513.5_1_1:93073119-93091404:-|nuORF	ENST00000492513.5_1_1:93073119-93091404:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8423767089844	3	417.195138	1248.56358	-0.27641	-0.00011532	-0.63196	-0.00026365	-0.90836	-0.00037896	417.19479610779547	26.964	0.22092	27.051	26.949	27.17	0.086699					19	14	2	0	0	0	0.25981	1	3264	3264		0.26902	0.033176	1	8641			1627	711	1101	1110	2245	2245					-0.05075613933013301
DLEGHLLAL	9	Unmodified	_DLEGHLLAL_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7742614746094	2	490.7742	979.533846	0.23256	0.00011414	0.079319	3.8927E-05	0.31188	0.00015306	490.7741254830704	51.468	0.42728	51.538	51.405	51.832	0.069874					32	15	3	0	0	0	0.22344	1	10629	10629		15.847	2.8047	1	174640			1628	5451	1102	1111	2246	2246					0.04326054068940266
DLERVLCREG	10	Unmodified	_DLERVLCREG_					0	0	0		ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3221435546875	2	595.303329	1188.59211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.959	1	69.959	69.459	70.459	0								0	0	0	0.3327	1	16393	16393		8.7454	2.0222	1				1629	1769	1103	1112	2247	2247					0.005353676519462169
DLFDFITER	9	Unmodified	_DLFDFITER_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1;ENSG00000198355|ENST00000360612|PIM3	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2879028320312	2	578.287671	1154.56079	0.71318	0.00041242	-0.1483	-8.5758E-05	0.56489	0.00032667	578.2873975966718	84.038	0.63263	84.038	83.658	84.291	0					73	23	5	0	0	0	1.2368E-07	1	20701	20701		148.27	85.695	1	1612600			1630	2836	1104	1113	2248	2248					-0.010308821105354582
DLFDFITER	9	Unmodified	_DLFDFITER_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1;ENSG00000198355|ENST00000360612|PIM3	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2879028320312	2	578.287671	1154.56079	0.44517	0.00025743	0.15665	9.0591E-05	0.60182	0.00034803	578.2876353292955	83.98	0.77444	84.002	83.56	84.334	0.021751					82	28	5	0	0	0	0.00021732	1	20537	20537		136.39	73.819	1	1634300			1631	2836	1104	1113	2249	2249					-0.010308821105354582
DLFSVEDEYAT	11	Unmodified	_DLFSVEDEYAT_					0	0	0			REV__ENSG00000171119|ENST00000303212|NRTN	REV__ENSG00000171119|ENST00000303212|NRTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.783203125	2	644.782615	1287.55068	0.035979	2.3198E-05	0.69598	0.00044876	0.73196	0.00047196	644.7830178411472	89.708	0.51558	89.742	89.544	90.059	0.034065					51	19	4	0	0	0	0.30798	2	22286	22243;22286		17.113	10.483	1	593990	+		1632	10240	1105	1114	2250;2251	2251					-0.08159534626406639
DLFYSFWER	9	Unmodified	_DLFYSFWER_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.795654296875	2	631.795663	1261.57677	0.29469	0.00018618	-0.19932	-0.00012593	0.095361	6.0249E-05	631.7956820375447	82.795	0.36842	82.816	82.648	83.017	0.021751					18	12	2	0	0	0	0.22861	1	20172	20172		15.248	8.1468	1	103400			1633	1357	1106	1115	2252	2252					-0.04355175873615735
DLFYSFWER	9	Unmodified	_DLFYSFWER_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	631.795663	1261.57677	0.31208	0.00019717	-0.099057	-6.2584E-05	0.21302	0.00013459	631.7950860357074	82.735	0.36214	82.735	82.595	82.957	0	-0.040571	7.9234E-05	NaN	15.248	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104420			1634	1357	1106	1115							-0.04355175873615735
DLHFPPGLSF	10	Unmodified	_DLHFPPGLSF_					0	0	0		nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7750854492188	2	565.287474	1128.5604	0.3403	0.00019237	0.53587	0.00030292	0.87617	0.00049529	565.287780130198	75.59	0.49834	75.634	75.44	75.939	0.044037					71	27	4	0	0	0	0.33099	2	17941	17941;17946		19.257	2.1441	1	4909600			1635	358	1107	1116	2253;2254	2253					0.001257429602674165
DLIGCIIGR	9	Unmodified	_DLIGCIIGR_					0	0	0		ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.27154541015625	2	480.27077	958.526987	0.11998	5.7624E-05	0.46255	0.00022215	0.58253	0.00027977	480.27100509719264	74.519	0.56705	74.519	74.287	74.854	0					34	20	2	0	0	0	0.03918	2	17780	17780;17842		45.7	2.0962	1	148070			1636	4929	1108	1117	2255;2256	2255					0.04606417916738792
DLIGCIIGR	9	Unmodified	_DLIGCIIGR_					0	0	0		ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.27099609375	2	480.27077	958.526987	0.14388	6.91E-05	0.38584	0.00018531	0.52972	0.00025441	480.2709082536389	74.449	0.47193	74.498	74.316	74.788	0.048546					28	16	2	0	0	0	0.03918	1	17617	17617		45.7	1.8413	1	133750			1637	4929	1108	1117	2257	2257					0.04606417916738792
DLIGLKKLD	9	Unmodified	_DLIGLKKLD_					0	0	0			REV__ENST00000485761.1_1_1:208057818-208072476:-|nuORF	REV__ENST00000485761.1_1_1:208057818-208072476:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.8125915527344	2	507.813325	1013.6121	-0.63748	-0.00032372	-0.44536	-0.00022616	-1.0828	-0.00054988	507.8131810328275	41.918	0.45137	41.918	41.711	42.162	0					27	15	2	0	0	0	0.28472	1	7879	7879		8.7454	0	1	50873	+		1638	10335	1109	1118	2258	2258					0.10583486654184071
DLIGLKKLD	9	Unmodified	_DLIGLKKLD_					0	0	0			REV__ENST00000485761.1_1_1:208057818-208072476:-|nuORF	REV__ENST00000485761.1_1_1:208057818-208072476:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	507.813325	1013.6121	-0.63748	-0.00032372	-0.44536	-0.00022616	-1.0828	-0.00054988	507.8131810328275	41.918	0.45137	41.918	41.711	42.162	0	-0.00099468	-5.4197E-06	NaN	8.7454	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50873	+		1639	10335	1109	1118							0.10583486654184071
DLIGLKKLD	9	Unmodified	_DLIGLKKLD_					0	0	0			REV__ENST00000485761.1_1_1:208057818-208072476:-|nuORF	REV__ENST00000485761.1_1_1:208057818-208072476:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	507.813325	1013.6121	-0.40549	-0.00020591	-0.43182	-0.00021928	-0.83731	-0.0004252	507.8130746730263	41.83	0.4027	41.92	41.735	42.138	0.089764	0.00099468	8.3281E-06	NaN	8.7454	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26550	+		1640	10335	1109	1118							0.10583486654184071
DLLADMMPN	9	Unmodified	_DLLADMMPN_					0	0	0			REV__tr|U7SFN4|U7SFN4_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02317PE=4SV=1	REV__tr|U7SFN4|U7SFN4_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02317PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.24853515625	2	510.230453	1018.44635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.417	1	75.461	74.961	75.961	0.044037								0	0	0	0.23884	1	17904	17904		11.64	0	1		+		1641	13039	1110	1119	2259	2259					-0.062132311884738556
DLLEMWDE	8	Unmodified	_DLLEMWDE_					0	0	0		ENSG00000106686|ENST00000682582|SPATA6L	ENSG00000106686|ENST00000682582|SPATA6L	ENSG00000106686|ENST00000682582|SPATA6L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7267456054688	2	525.726058	1049.43756	0.41649	0.00021896	-0.040849	-2.1475E-05	0.37564	0.00019748	525.725954363714	91.671	0.41342	91.671	91.484	91.897	0					27	15	2	0	0	0	0.53494	1	23053	23053		4.756	0.81161	1	123000			1642	1533	1111	1120	2260	2260					-0.08517881553325424
DLLFFCVV	8	Unmodified	_DLLFFCVV_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7376708984375	2	478.251514	954.488476	-0.45962	-0.00021981	-0.30903	-0.00014779	-0.76865	-0.00036761	478.2513288704572	25.478	0.36072	25.478	25.226	25.587	0					41	28	2	0	0	0	0.53817	1	2985	2985		2.5775	0.73324	1	15634			1643	4046	1112	1121	2261	2261					0.009411122822029938
DLLGTWVF	8	Unmodified	_DLLGTWVF_					0	0	0		ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC	ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000533865.5_1_11:88068232-88070840:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.75238037109375	2	475.752736	949.490919	-0.16299	-7.7545E-05	0.13314	6.3341E-05	-0.029855	-1.4204E-05	475.7525135872269	104.96	0.38454	104.96	104.74	105.13	0					98	37	3	0	0	0	0.028869	3	27014	26981;27014;27053		70.716	36.528	1	464200			1644	1642	1113	1122	2262;2263;2264	2263					0.014152840115229992
DLLGTWVF	8	Unmodified	_DLLGTWVF_					0	0	0		ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC	ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000533865.5_1_11:88068232-88070840:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.75201416015625	2	475.752736	949.490919	0.057453	2.7333E-05	-0.29958	-0.00014253	-0.24213	-0.00011519	475.7523016193552	104.92	0.48896	104.96	104.74	105.23	0.034004					116	53	3	0	0	0	0.035288	3	26833	26799;26833;26869		97.075	40.533	1	344960			1645	1642	1113	1122	2265;2266;2267	2266					0.014152840115229992
DLLLLKDHPF	10	Unmodified	_DLLLLKDHPF_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.232666015625	3	404.23253	1209.67576	0.54985	0.00022227	-0.39971	-0.00016158	0.15014	6.0691E-05	404.232323390163	62.047	1.1235	62.047	61.846	62.969	0					138	42	5	0	0	0	0.44024	2	13945	13945;14181		6.6235	1.2733	1	2826300	+		1646	10130	1114	1123	2268;2269	2268					0.07930847091279247
DLLLLKDHPF	10	Unmodified	_DLLLLKDHPF_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2326354980469	3	404.23253	1209.67576	0.12274	4.9616E-05	-0.027443	-1.1093E-05	0.095298	3.8523E-05	404.2324705870386	61.997	1.1665	62.07	61.825	62.991	0.073421					124	45	4	0	0	0	0.45351	1	14045	14045		4.1166	0.52957	1	2542400	+		1647	10130	1114	1123	2270	2270					0.07930847091279247
DLLQMLDTL	9	Unmodified	_DLLQMLDTL_					0	0	0		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2803955078125	2	531.281	1060.54745	0.15241	8.0973E-05	-0.23429	-0.00012448	-0.081881	-4.3502E-05	531.2807752412768	45.582	1.6128	45.667	44.781	46.393	0.085617					127	61	3	0	0	0	0.32375	1	8974	8974		3.5965	0.31518	1	230100			1648	4250	1115	1124	2271	2271					0.01959543785869755
DLLVLGHPYI	10	Unmodified	_DLLVLGHPYI_					0	0	0			REV__ENST00000454078.1_1_6:71318605-71318935:-|nuORF	REV__ENST00000454078.1_1_6:71318605-71318935:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.3251342773438	2	570.326599	1138.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.718	1	22.82	22.32	23.32	0.10178								0	0	0	0.33861	1	2099	2099		1.8442	0	1		+		1649	8445	1116	1125	2272	2272					0.07487175545520586
DLMRFRKPWPL	11	Unmodified	_DLMRFRKPWPL_					0	0	0		ENST00000422351.5_1_2:43266302-43266656:-|nuORF	ENST00000422351.5_1_2:43266302-43266656:-|nuORF	ENST00000422351.5_1_2:43266302-43266656:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.9408874511719	3	486.939463	1457.79656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.096	1	47.179	46.679	47.679	0.083096								0	0	0	0.33835	1	9304	9304		1.3296	0.82369	1				1650	6455	1117	1126	2273	2273					0.08597351533103392
DLNGYKNEFF	10	Unmodified	_DLNGYKNEFF_					0	0	0			REV__YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	REV__YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5547180175781	3	416.196144	1245.5666	0.37783	0.00015725	0.81937	0.00034102	1.1972	0.00049827	416.1954852875906	49.581	0.2301	49.581	49.422	49.653	0					9	7	2	0	0	0	0.31837	1	10163	10163		1.9064	1.4519	1	15129	+		1651	9250	1118	1127	2274	2274					-0.04635783598860144
DLPERLTSN	9	Unmodified	_DLPERLTSN_					0	0	0			REV__FAM135B|p.S645N|1|0.18|ENSG00000147724|chr8:138152541-138152541|C/T|missense_variant	REV__FAM135B|p.S645N|1|0.18|ENSG00000147724|chr8:138152541-138152541|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2901611328125	2	522.769645	1043.52474	0.25579	0.00013372	4.0139	0.0020983	4.2696	0.002232	522.7718655535156	52.776	0.26857	52.843	52.665	52.934	0.067173					14	10	2	0	0	0	0.1789	1	10994	10994		29.082	5.061	1	72130	+		1652	12653	1119	1128	2275	2275					0.004716607126283634
DLPGPFGL	8	Unmodified	_DLPGPFGL_					0	0	0			REV__ENST00000356083.7_1_9:116999288-117002548:+|nuORF	REV__ENST00000356083.7_1_9:116999288-117002548:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.20660400390625	2	408.218529	814.422505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.597	1	37.681	37.181	38.181	0.084476								0	0	0	0.38822	1	6444	6444		2.8892	0	1		+		1653	11502	1120	1129	2276	2276					0.007870394316569218
DLPKYNFLL	9	Unmodified	_DLPKYNFLL_					0	0	0			REV__ENSG00000106733|ENST00000361092|NMRK1	REV__ENSG00000106733|ENST00000361092|NMRK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8028564453125	2	561.813325	1121.6121	0.51038	0.00028674	0.30044	0.00016879	0.81081	0.00045553	561.8133708630327	74.945	0.61612	74.945	74.635	75.251	0					33	16	3	0	0	0	0.098463	1	17904	17904		32.786	2.9451	1	549860	+		1654	8579	1121	1130	2277	2277					0.05615486654187407
DLPLLAEVI	9	Unmodified	_DLPLLAEVI_					0	0	0		ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110	ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.79217529296875	2	491.794601	981.574648	0.18867	9.2788E-05	-1.8673	-0.00091833	-1.6786	-0.00082554	491.7934561513431	90	0.61385	90	89.505	90.118	0					40	23	2	0	0	0	0.26684	1	22498	22498		10.824	3.5347	1	301960			1655	1379	1122	1131	2278	2278					0.08312395388554705
DLPNRPETSF	10	Unmodified	_DLPNRPETSF_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.2896118164062	2	588.288202	1174.56185	0.40731	0.00023961	3.9318	0.002313	4.3391	0.0025526	588.2896632995918	78.693	0.44199	78.693	78.512	78.954	0					32	15	4	0	0	0	0.4101	1	19102	19102		10.8	1.2555	1	238600			1656	2894	1123	1132	2279	2279					-0.018446677416250168
DLPNRPETSF	10	Unmodified	_DLPNRPETSF_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	588.288202	1174.56185	0.62947	0.00037031	3.5019	0.0020601	4.1313	0.0024304	588.2900619070715	78.652	0.48481	78.682	78.505	78.99	0.030159	-0.0054979	-9.7582E-05	NaN	10.8	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156800			1657	2894	1123	1132							-0.018446677416250168
DLPVIDILKIE	11	Unmodified	_DLPVIDILKIE_					0	0	0		ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.377685546875	2	634.379029	1266.7435	-0.17226	-0.00010928	-4.2219	-0.0026783	-4.3941	-0.0027875	634.3767816952743	108.4	0.15807	108.4	108.31	108.46	0					47	20	3	0	0	0	0.39569	1	27957	27957		5.2969	0.39987	1	4856500			1658	3972	1124	1133	2280	2280					0.12080252231430677
DLPVIDILKIE	11	Unmodified	_DLPVIDILKIE_					0	0	0		ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.37841796875	2	634.379029	1266.7435	-0.17198	-0.0001091	-2.2847	-0.0014494	-2.4567	-0.0015585	634.3782263015406	108.76	0.30014	108.76	108.7	109	0					78	46	3	0	0	0	0.39569	2	28036	28036;28062		5.2969	0.39987	1	2174800			1659	3972	1124	1133	2281;2282	2281					0.12080252231430677
DLPVIDILKIE	11	Unmodified	_DLPVIDILKIE_					0	0	0		ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3770751953125	2	634.379029	1266.7435	0.24783	0.00015722	-2.1352	-0.0013546	-1.8874	-0.0011973	634.8779158270314	108.53	0.19392	108.55	108.49	108.69	0.019402					52	28	3	0	0	0	0.31057	1	27802	27802		5.2969	0.39987	1	1362600			1660	3972	1124	1133	2283	2283					0.12080252231430677
DLPYEQARL	9	Unmodified	_DLPYEQARL_					0	0	0		ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.787841796875	2	552.787838	1103.56112	0.44818	0.00024775	-0.70268	-0.00038844	-0.2545	-0.00014069	552.7871823877158	47.009	0.41096	47.009	46.789	47.2	0					34	14	3	0	0	0	0.11547	1	9416	9416		29.082	2.8134	1	202820			1661	5792	1125	1134	2284	2284					0.013485376093285595
DLPYEQARL	9	Unmodified	_DLPYEQARL_					0	0	0		ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7882080078125	2	552.787838	1103.56112	0.49199	0.00027196	-0.94479	-0.00052227	-0.4528	-0.0002503	552.7866377446801	46.966	0.69886	47.049	46.835	47.534	0.083096					39	23	4	0	0	0	0.11547	1	9252	9252		29.082	2.8134	1	186930			1662	5792	1125	1134	2285	2285					0.013485376093285595
DLQNTELQR	9	Unmodified	_DLQNTELQR_					0	0	0			REV__ENSG00000196642|ENST00000311502|RABL6	REV__ENSG00000196642|ENST00000311502|RABL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7857055664062	2	558.785827	1115.5571	-0.083431	-4.662E-05	-0.56992	-0.00031847	-0.65335	-0.00036509	558.7855164516214	25.887	0.35504	25.887	25.735	26.09	0					47	26	2	0	0	0	0.30397	1	3077	3077		6.2058	0	1	44611	+		1663	10827	1126	1135	2286	2286					0.0039444811559405935
DLQRPLQSF	9	Unmodified	_DLQRPLQSF_					0	0	0		nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1	nc|ENSG00000048991|Q15032|R3HDM1	nc|ENSG00000048991|Q15032|R3HDM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2798461914062	2	552.29583	1102.57711	0.54985	0.00030368	0.063948	3.5318E-05	0.6138	0.000339	552.2959221149456	55.616	0.26723	55.681	55.548	55.815	0.065128					17	9	3	0	0	0	0.22344	1	11910	11910		15.847	2.3393	1	83474			1664	570	1127	1136	2287	2287					0.029922438462335776
DLRDDPVF	8	Unmodified	_DLRDDPVF_					0	0	0			REV__ENSG00000196642|ENST00000311502|RABL6	REV__ENSG00000196642|ENST00000311502|RABL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7406921386719	2	488.740357	975.46616	0.089028	4.3511E-05	0.17841	8.7198E-05	0.26744	0.00013071	488.7402807730745	49.898	0.55369	49.898	49.653	50.206	0					46	19	3	0	0	0	0.32977	1	10263	10263		32.305	3.2239	1	317420	+		1665	10827	1128	1137	2288	2288					-0.022553958618573233
DLRERQAGVY	10	Unmodified	_DLRERQAGVY_					0	0	0		ENST00000590076.2_1_19:46271073-46274920:+|nuORF	ENST00000590076.2_1_19:46271073-46274920:+|nuORF	ENST00000590076.2_1_19:46271073-46274920:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3001098632812	2	603.814919	1205.61528	0.68353	0.00041272	-1.0191	-0.00061535	-0.33558	-0.00020263	604.3157963691391	69.012	0.17679	69.012	68.868	69.045	0					11	6	2	0	0	0	0.31747	1	16076	16076		5.7319	0	1	71856			1666	7259	1129	1138	2289	2289					0.020701297609093672
DLRVQDTGR	9	Unmodified	_DLRVQDTGR_					0	0	0			REV__nc|ENSG00000170011|Q8NFW9-4|MYRIP	REV__nc|ENSG00000170011|Q8NFW9-4|MYRIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2806396484375	2	530.280712	1058.54687	-0.29957	-0.00015886	0.010112	5.3624E-06	-0.28946	-0.00015349	530.2807523827785	20.144	0.32913	20.144	20.003	20.332	0					60	31	2	0	0	0	0.30397	2	1542	1509;1542		6.2058	0	1	52833	+		1667	10195	1130	1139	2290;2291	2291					0.019938851810593405
DLSFKEQEL	9	Unmodified	_DLSFKEQEL_					0	0	0		nc|ENSG00000091436|Q9NYL2-2|MAP3K20;ENSG00000091436|ENST00000375213|MAP3K20	nc|ENSG00000091436|Q9NYL2-2|MAP3K20	nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2581787109375	2	554.779679	1107.5448	0.47269	0.00026224	-0.98096	-0.00054421	-0.50827	-0.00028198	554.7791771415223	47.904	0.39601	47.904	47.763	48.159	0					23	13	2	0	0	0	0.18759	1	9682	9682		27.629	3.6082	1	117370			1668	1061	1131	1140	2292	2292					-0.00466588347421748
DLSFPWIL	8	Unmodified	_DLSFPWIL_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7868957519531	2	495.768386	989.522219	0.65874	0.00032658	-0.18751	-9.2959E-05	0.47124	0.00023362	495.76822566927444	85.413	0.61611	85.413	85.189	85.806	0					57	26	3	0	0	0	0.48651	1	21100	21100		14.582	2.0501	1	348390			1669	7363	1132	1141	2293	2293					0.027038570456284106
DLSHPQVF	8	Unmodified	_DLSHPQVF_					0	0	0			REV__ENST00000461774.5_1_1:109365950-109373230:-|nuORF	REV__ENST00000461774.5_1_1:109365950-109373230:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.73809814453125	2	471.737617	941.460681	-0.020163	-9.5114E-06	0.27096	0.00012782	0.2508	0.00011831	471.73755534153037	46.774	0.78156	46.857	46.65	47.431	0.083096					67	33	3	0	0	0	0.50815	1	9268	9268		11.64	2.8949	1	295400	+		1670	9896	1133	1142	2294	2294					-0.012390746536652841
DLSTHQPAL	9	Unmodified	_DLSTHQPAL_					0	0	0			REV__nc|ENSG00000133962|Q9H7T0-2|CATSPERB	REV__nc|ENSG00000133962|Q9H7T0-2|CATSPERB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.25396728515625	2	491.253631	980.49271	0.040371	1.9833E-05	0.39614	0.0001946	0.43651	0.00021444	491.2536648499683	45.644	0.42884	45.729	45.525	45.954	0.085617					32	16	3	0	0	0	0.32112	1	8918	8918		3.9444	0.3479	1	90728	+		1671	9158	1134	1143	2295	2295					0.0016829302946916869
DLSVKDEMHTG	11	Unmodified	_DLSVKDEMHTG_					0	0	0			REV__nc|ENSG00000163534|Q96LA6-2|FCRL1	REV__nc|ENSG00000163534|Q96LA6-2|FCRL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7891845703125	2	616.284802	1230.55505	-0.6687	-0.00041211	2.1211	0.0013072	1.4524	0.00089508	616.2860352433848	27.21	0.24633	27.21	27.097	27.344	0					27	15	2	0	0	0	0.41422	1	3507	3507		1.0715	0.5467	1	24062	+		1672	9943	1135	1144	2296	2296					-0.05100348684504752
DLTWPPAI	8	Unmodified	_DLTWPPAI_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7611389160156	2	456.744911	911.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.838	1	49.911	49.411	50.411	0.07312								0	0	0	0.38413	1	10133	10133		20.871	1.4322	1				1673	4749	1136	1145	2297	2297					0.01598997494465948
DLVFWRAKW	9	Unmodified	_DLVFWRAKW_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.9154968261719	3	407.557348	1219.65021	0.010037	4.0906E-06	3.9315	0.0016023	3.9415	0.0016064	407.5588923362069	36.203	0.31802	36.285	36.159	36.477	0.081711					21	12	2	0	0	0	0.2553	1	6081	6081		5.2969	0.39987	1	21398	+		1674	8375	1137	1146	2298	2298					0.049174173595019965
DLVFWRAKW	9	Unmodified	_DLVFWRAKW_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	407.557348	1219.65021	0.38371	0.00015639	2.948	0.0012015	3.3317	0.0013579	407.55840175137774	36.326	0.33218	36.326	36.128	36.46	0	0.020328	-0.00063906	NaN	5.2969	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24572	+		1675	8375	1137	1146							0.049174173595019965
DLVHFDFM	8	Unmodified	_DLVHFDFM_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541566-24543501:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.751220703125	2	512.233853	1022.45315	0.21016	0.00010765	-2.7624	-0.001415	-2.5522	-0.0013073	512.2324728304122	50.105	0.58363	50.105	49.764	50.348	0					36	20	3	0	0	0	0.35042	1	10399	10399		19.439	1.304	1	73695			1676	1635	1138	1147	2299	2299					-0.057175502455947935
DLVLGNVEI	9	Unmodified	_DLVLGNVEI_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.27398681640625	2	486.274032	970.533512	0.16022	7.7909E-05	0.066166	3.2175E-05	0.22638	0.00011008	486.2740198477992	75.16	0.43167	75.204	75.115	75.546	0.044037					25	15	2	0	0	0	0.0569	1	17852	17852		41.84	1.8899	1	624430	+		1677	10530	1139	1148	2300	2300					0.0470663434908829
DLWAAWQE	8	Unmodified	_DLWAAWQE_					0	0	0			REV__nc|ENSG00000080298|P48380-2|RFX3	REV__nc|ENSG00000080298|P48380-2|RFX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2211608886719	2	509.735074	1017.4556	0.2059	0.00010495	1.2643	0.00064446	1.4702	0.00074941	509.73643360360944	36.422	0.54162	36.504	36.312	36.853	0.081711					50	22	4	0	0	0	0.53494	1	6070	6070		4.756	0.42677	1	36575	+		1678	8226	1140	1149	2301	2301					-0.052433785162975255
DLYDAGVKR	9	Unmodified	_DLYDAGVKR_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.232177734375	2	518.774731	1035.53491	-0.078748	-4.0852E-05	-2.8623	-0.0014849	-2.9411	-0.0015257	518.7746294019938	32.021	0.28846	32.021	31.793	32.082	0					21	11	2	0	0	0	0.25281	1	4882	4882		6.7232	1.9672	1	36405			1679	4887	1141	1150	2302	2302					0.018562684378366612
DLYYILFIL	9	Unmodified	_DLYYILFIL_					0	0	0			REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2802734375	2	586.833726	1171.6529	0.8626	0.0005062	-1.4696	-0.00086241	-0.607	-0.00035621	587.3346595096309	99.226	0.068176	99.268	99.225	99.294	0.042839					5	3	2	0	0	0	0.25504	1	25152	25152		4.756	0	1	30942	+		1680	11315	1142	1151	2303	2303					0.07393827973805855
DLYYILFIL	9	Unmodified	_DLYYILFIL_					0	0	0			REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3056640625	2	586.833726	1171.6529	0.53451	0.00031367	0.86401	0.00050703	1.3985	0.0008207	586.8339358792114	87.098	1.3125	87.126	86.882	88.194	0.027573					70	51	2	0	0	0	0.25051	1	21696	21696		7.9102	5.3327	1	302260	+		1681	11315	1142	1151	2304	2304					0.07393827973805855
DLYYILFIL	9	Unmodified	_DLYYILFIL_					0	0	0			REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	586.833726	1171.6529	0.45228	0.00026542	0.62076	0.00036428	1.073	0.0006297	586.8338517317546	87.035	0.79332	87.035	86.915	87.708	0	-0.045305	-0.00011611	NaN	7.9102	53	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259510	+		1682	11315	1142	1151							0.07393827973805855
DMHTEVTTL	9	Oxidation (M)	_DM(Oxidation (M))HTEVTTL_		DM(1)HTEVTTL		DM(82)HTEVTTL	0	0	1		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7423706054688	2	531.742239	1061.46993	0.031596	1.6801E-05	0.21162	0.00011253	0.24321	0.00012933	531.742283345269	39.566	0.94358	39.566	39.237	40.18	0					109	33	5	0	0	0	0.0052407	2	7181	7129;7181		81.89	39.796	1	1626600			1683	7529	1143	1152	2305;2306	2306		334			-0.05835094150302211
DMHTEVTTL	9	Oxidation (M)	_DM(Oxidation (M))HTEVTTL_		DM(1)HTEVTTL		DM(68)HTEVTTL	0	0	1		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.74169921875	2	531.742239	1061.46993	-0.43207	-0.00022975	-0.11908	-6.3319E-05	-0.55114	-0.00029307	531.7421502450123	41.253	3.5394	41.253	40.151	43.691	0					288	126	4	0	0	0	0.0097093	5	7705	7613;7657;7705;7758;7807		68.081	33.978	1	1028100			1684	7529	1143	1152	2307;2308;2309;2310;2311	2309		334			-0.05835094150302211
DMHTEVTTL	9	Oxidation (M)	_DM(Oxidation (M))HTEVTTL_		DM(1)HTEVTTL		DM(72)HTEVTTL	0	0	1		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7423706054688	2	531.742239	1061.46993	0.22406	0.00011914	0.054023	2.8726E-05	0.27809	0.00014787	531.7421884986802	39.456	1.3045	39.545	39.131	40.436	0.088562					128	51	4	0	0	0	0.0084662	1	7012	7012		71.922	29.828	1	1352200			1685	7529	1143	1152	2312	2312		334			-0.05835094150302211
DMHTEVTTL	9	Oxidation (M)	_DM(Oxidation (M))HTEVTTL_		DM(1)HTEVTTL		DM(55)HTEVTTL	0	0	1		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7421875	2	531.742239	1061.46993	-0.19696	-0.00010473	-0.17694	-9.4089E-05	-0.3739	-0.00019882	531.7420843908523	41.165	2.5429	41.255	40.345	42.887	0.089642					239	98	4	0	0	0	0.024893	4	7477	7477;7524;7572;7610		54.774	12.679	1	858420			1686	7529	1143	1152	2313;2314;2315;2316	2313		334			-0.05835094150302211
DMHTEVTTL	9	Unmodified	_DMHTEVTTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7448120117188	2	523.744782	1045.47501	0.2738	0.0001434	-0.18548	-9.7144E-05	0.088318	4.6256E-05	523.7446549091865	48.102	0.69242	48.102	47.852	48.544	0					54	23	4	0	0	0	0.047633	1	9726	9726		43.858	7.7313	1	625370			1687	7529	1143	1153	2317	2317					-0.04590790287670643
DMHTEVTTL	9	Unmodified	_DMHTEVTTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7447509765625	2	523.744782	1045.47501	0.38032	0.00019919	-0.23072	-0.00012084	0.1496	7.8351E-05	523.7445911920582	47.986	0.62907	48.066	47.843	48.472	0.080032					55	22	4	0	0	0	0.028398	1	9569	9569		52.268	16.141	1	583310			1688	7529	1143	1153	2318	2318					-0.04590790287670643
DMKKRFEKQ	9	Unmodified	_DMKKRFEKQ_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-4|KIF27	REV__nc|ENSG00000165115|Q86VH2-4|KIF27	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.19097900390625	3	403.885135	1208.63358	0.043934	1.7744E-05	0.35332	0.0001427	0.39725	0.00016044	404.2194558778498	27.087	0.067589	27.087	27.04	27.108	0					6	4	2	0	0	0	0.25875	1	3435	3435		0.96228	0.18574	1	7450.6	+		1689	10022	1144	1154	2319	2319					0.03760548411264608
DMLVFSLIINT	11	Unmodified	_DMLVFSLIINT_					0	0	0			REV__VPS29|p.P148L|1|0.14|ENSG00000111237|chr12:110492111-110492111|G/A|missense_variant	REV__VPS29|p.P148L|1|0.14|ENSG00000111237|chr12:110492111-110492111|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.360595703125	2	633.344132	1264.67371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.87	1	101.91	101.41	102.41	0.042656								0	0	0	0.31333	1	25953	25953		10.151	1.995	1		+		1690	13330	1145	1155	2320	2320					0.051960502911697404
DMPPLTLEGIQ	11	Unmodified	_DMPPLTLEGIQ_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.2914428710938	2	607.310289	1212.60602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.997	1	92.997	92.497	93.497	0								0	0	0	0.31731	1	23416	23416		8.7454	1.1365	1				1691	338	1146	1156	2321	2321					0.008226003603567733
DMQEYFDF	8	Unmodified	_DMQEYFDF_					0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2957153320312	2	547.710408	1093.40626	0.07813	4.2793E-05	0.57382	0.00031429	0.65195	0.00035708	547.7107579309821	44.69	0.30709	44.778	44.681	44.988	0.08754					16	11	2	0	0	0	0.3576	1	8589	8589		0.6015	0	1	36136	+		1692	9927	1147	1157	2322	2322					-0.13670454587395398
DMQEYFDF	8	Unmodified	_DMQEYFDF_					0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	547.710408	1093.40626	-0.14629	-8.0125E-05	1.1573	0.00063389	1.011	0.00055376	547.711081286738	44.805	0.24369	44.805	44.665	44.909	0	0.013389	0.00029043	NaN	0.6015	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24876	+		1693	9927	1147	1157							-0.13670454587395398
DMRDSRDPMY	10	Unmodified	_DMRDSRDPMY_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.7647094726562	2	643.268629	1284.52271	0.42036	0.00027041	-0.22457	-0.00014446	0.19579	0.00012595	643.2685917807728	69.007	0.63305	69.007	68.558	69.191	0					61	23	3	0	0	0	0.45945	1	16005	16005		2.9952	1.151	1	285610			1694	2239	1148	1158	2323	2323					-0.10817459359145687
DMREFVLLFMV	11	Unmodified	_DMREFVLLFMV_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.24212646484375	3	467.241931	1398.70396	0.57092	0.00026676	-0.56208	-0.00026263	0.0088338	4.1275E-06	467.2416273781669	65.195	0.87994	65.195	64.973	65.853	0					98	31	4	0	0	0	0.40738	1	14925	14925		2.6312	0.19645	1	891460		+	1695	228	1149	1159	2324	2324					0.020560856846941533
DMSEKVFVWN	10	Unmodified	_DMSEKVFVWN_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.7940063476562	2	627.794806	1253.57506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.211	1	50.211	49.711	50.711	0								0	0	0	0.33805	1	10377	10377		2.4985	1.0166	1		+		1696	12847	1150	1160	2325	2325					-0.04158552953867911
DMSRYQHF	8	Unmodified	_DMSRYQHF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2373046875	2	542.237458	1082.46036	0.36057	0.00019551	0.60181	0.00032632	0.96238	0.00052184	542.2375995689363	76.742	0.72817	76.742	76.415	77.144	0					96	25	5	0	0	0	0.53423	1	18429	18429		5.2307	1.2863	1	406150	+		1697	9323	1151	1161	2326	2326					-0.07756817645190495
DMVPMMHLS	9	Unmodified	_DMVPMMHLS_					0	0	0		ENST00000466499.6_1_14:67843246-67847401:+|nuORF	ENST00000466499.6_1_14:67843246-67847401:+|nuORF	ENST00000466499.6_1_14:67843246-67847401:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7360229492188	2	530.734848	1059.45514	0.32748	0.0001738	0.77477	0.0004112	1.1022	0.000585	530.7352833603179	50.021	0.57269	50.094	49.842	50.414	0.07312					32	19	2	0	0	0	0.33704	1	10163	10163		1.8442	1.8442	1	153350			1698	6640	1152	1162	2327	2327					-0.0722058082365038
DMYGPEKFTD	10	Unmodified	_DMYGPEKFTD_					0	0	0		ENST00000569768.1_1_16:20750201-20753061:-|nuORF;ENSG00000066654|ENST00000396083|THUMPD1	ENST00000569768.1_1_16:20750201-20753061:-|nuORF	ENST00000569768.1_1_16:20750201-20753061:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.76171875	2	601.755346	1201.49614	0.5072	0.00030521	1.6027	0.00096444	2.1099	0.0012697	603.2623299129489	101.08	0.22675	101.08	100.95	101.18	0					26	12	4	0	0	0	0.45945	1	25890	25890		2.9952	0.26005	1	80815			1699	702	1153	1163	2328	2328					-0.09654824978815668
DMYGPEKFTD	10	Unmodified	_DMYGPEKFTD_					0	0	0		ENST00000569768.1_1_16:20750201-20753061:-|nuORF;ENSG00000066654|ENST00000396083|THUMPD1	ENST00000569768.1_1_16:20750201-20753061:-|nuORF	ENST00000569768.1_1_16:20750201-20753061:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	601.755346	1201.49614	0.5814	0.00034986	-3.82	-0.0022987	-3.2386	-0.0019489	601.7528087499197	101.07	0.092979	101.11	101.09	101.18	0.042839	0.016925	-0.00096565	NaN	2.9952	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43142			1700	702	1153	1163							-0.09654824978815668
DNADEMIKTL	10	Oxidation (M)	_DNADEM(Oxidation (M))IKTL_		DNADEM(1)IKTL		DNADEM(46)IKTL	0	0	1		tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1	tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1	tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2744140625	2	583.273903	1164.53325	0.47966	0.00027977	0.51964	0.00030309	0.9993	0.00058287	583.274029518042	61.578	1.3866	61.578	61.218	62.605	0					173	63	3	0	0	0	0.095597	1	13836	13836		45.74	7.5643	1	6697000			1701	13531	1154	1164	2329	2329		345			-0.04243153433048974
DNAPEFPF	8	Unmodified	_DNAPEFPF_					0	0	0		nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5;ENSG00000099834|ENST00000397542|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.6935119628906	2	468.708525	935.402498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.483	1	42.573	42.073	43.073	0.089764								0	0	0	0.38822	1	7915	7915		2.3027	0	1				1702	1137	1155	1165	2330	2330					-0.06778756298945154
DNEPYIFKVF	10	Unmodified	_DNEPYIFKVF_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.3167724609375	2	636.318971	1270.62339	-0.40895	-0.00026022	-2.7171	-0.001729	-3.1261	-0.0019892	636.3173075923442	20.686	0.20917	20.686	20.589	20.798	0					26	22	2	0	0	0	0.47119	1	1664	1664		0	0	1	16144			1703	3592	1156	1166	2331	2331					-0.0010973604235005041
DNEYTPFYY	9	Unmodified	_DNEYTPFYY_					0	0	0			REV__ENSG00000198839|ENST00000361822|ZNF277	REV__ENSG00000198839|ENST00000361822|ZNF277	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.5016174316406	3	404.501233	1210.48187	0.0026652	1.0781E-06	0.97773	0.00039549	0.98039	0.00039657	404.5017823177348	46.603	0.18874	46.686	46.666	46.855	0.083096					12	10	2	0	0	0	0.34197	1	9162	9162		1.1933	0	1	83765	+		1704	10918	1157	1167	2332	2332					-0.11495154135445773
DNGHVKLADFG	11	Unmodified	_DNGHVKLADFG_					0	0	0		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	nc|ENSG00000011566|Q8IVH8-3|MAP4K3	nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7909545898438	2	586.78837	1171.56219	0.5329	0.0003127	2.6081	0.0015304	3.141	0.0018431	586.7895189725941	71.795	1.6359	71.851	71.024	72.66	0.055939					95	58	3	0	0	0	0.27921	1	16805	16805		20.415	10.341	1	473550			1705	436	1158	1168	2333	2333					-0.016732480217797274
DNHCGKEQR	9	Unmodified	_DNHCGKEQR_					0	0	0		ENST00000543834.1_12:9095999-9098053:-|nuORF;ENSG00000003056|ENST00000000412|M6PR	ENST00000543834.1_12:9095999-9098053:-|nuORF	ENST00000543834.1_12:9095999-9098053:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.1650390625	2	543.740896	1085.46724	-0.0733	-3.9856E-05	2.1573	0.001173	2.084	0.0011331	543.742108247048	27.56	0.22975	27.646	27.586	27.816	0.0867					22	15	2	0	0	0	0.25996	1	3466	3466		0.45834	0.057624	1	14539			1706	328	1159	1169	2334	2334					-0.07207504764619443
DNLNSSQR	8	Unmodified	_DNLNSSQR_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.582275390625	2	467.222862	932.431172	0.049705	2.3224E-05	1.1619	0.00054286	1.2116	0.00056608	467.2237049947485	56.596	0.31013	56.663	56.543	56.853	0.066452					12	10	2	0	0	0	0.35759	1	12187	12187		10.824	1.4765	1	46565			1707	4396	1160	1170	2335	2335					-0.037746386698017886
DNPSLDSRL	9	Unmodified	_DNPSLDSRL_					0	0	0		tr|U7T4Z4|U7T4Z4_FUSNURiboflavinbiosynthesisproteinRibDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00613PE=3SV=1	tr|U7T4Z4|U7T4Z4_FUSNURiboflavinbiosynthesisproteinRibDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00613PE=3SV=1	tr|U7T4Z4|U7T4Z4_FUSNURiboflavinbiosynthesisproteinRibDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00613PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2743835449219	2	508.753995	1015.49344	-0.17832	-9.0719E-05	0.88478	0.00045013	0.70646	0.00035942	508.75441032154384	29.271	0.30115	29.271	29.155	29.456	0					23	18	2	0	0	0	0.25699	1	4072	4072		3.5965	0	1	27940			1708	13722	1161	1171	2336	2336					-0.0136891232148173
DNVDVVTILM	10	Unmodified	_DNVDVVTILM_					0	0	0			REV__PCDHGA11|p.P363Vfs*30|1|0.07|ENSG00000253873|chr5:141422312-141422313|-/AGTTTGTGAA|frameshift_variant	REV__PCDHGA11|p.P363Vfs*30|1|0.07|ENSG00000253873|chr5:141422312-141422313|-/AGTTTGTGAA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8134155273438	2	559.791732	1117.56891	0.45006	0.00025194	-0.77773	-0.00043537	-0.32767	-0.00018343	559.7910530675267	83.771	0.67677	83.792	83.589	84.266	0.021744					53	24	3	0	0	0	0.40359	1	20444	20444		11.495	1.4208	1	363160	+		1709	11087	1162	1172	2337	2337					0.01482928814607476
DPAALWNEF	9	Unmodified	_DPAALWNEF_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2747802734375	2	531.748182	1061.48181	0.30745	0.00016349	0.59846	0.00031823	0.90591	0.00048172	531.7482357715389	57.007	0.81452	57.007	56.674	57.489	0					48	29	2	0	0	0	0.15911	1	12483	12483		25.399	0	1	202990			1710	3475	1163	1173	2338	2338					-0.046471093448190004
DPAALWNEF	9	Unmodified	_DPAALWNEF_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2747802734375	2	531.748182	1061.48181	0.48419	0.00025747	0.7367	0.00039174	1.2209	0.0006492	531.7483805307029	56.893	0.6902	56.96	56.683	57.373	0.066452					42	25	2	0	0	0	0.18479	1	12315	12315		26.884	3.7352	1	205950			1711	3475	1163	1173	2339	2339					-0.046471093448190004
DPACPEIKIQL	11	Carbamidomethyl (C)	_DPAC(Carbamidomethyl (C))PEIKIQL_	DPAC(1)PEIKIQL		DPAC(44)PEIKIQL		0	1	0		ENST00000471600.6_1_1:21924215-21924573:-|nuORF;ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP	ENST00000471600.6_1_1:21924215-21924573:-|nuORF	ENST00000471600.6_1_1:21924215-21924573:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3370361328125	2	642.336838	1282.65912	0.28555	0.00018342	0.15231	9.7835E-05	0.43786	0.00028125	642.3368627068675	74.411	0.68299	74.411	74.171	74.854	0					74	24	4	0	0	0	0.11265	1	17763	17763		43.772	43.772	1	2085600			1712	848	1164	1174	2340	2340	1				0.029099781429977156
DPAESPAAEL	10	Unmodified	_DPAESPAAEL_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2893371582031	2	500.235104	998.455655	-0.036581	-1.8299E-05	0.13337	6.6717E-05	0.096791	4.8418E-05	500.23536445342154	45.945	0.61953	45.945	45.617	46.237	0					36	21	3	0	0	0	0.30896	1	9088	9088		13.042	2.2185	1	72964	+		1713	9521	1165	1175	2341	2341					-0.043634233069496986
DPAGVHPPR	9	Unmodified	_DPAGVHPPR_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2486877441406	2	473.248683	944.482814	-0.47429	-0.00022446	0.19453	9.2061E-05	-0.27976	-0.0001324	473.24875707587836	24.213	0.76742	24.213	23.681	24.448	0					111	69	2	0	0	0	0.24021	2	2602	2578;2602		13.906	7.1829	1	35055			1714	523	1166	1176	2342;2343	2343					0.008351498147590064
DPAGVHPPR	9	Unmodified	_DPAGVHPPR_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2486572265625	2	473.248683	944.482814	-0.29687	-0.00014049	0.087855	4.1577E-05	-0.20901	-9.8915E-05	473.2487158587527	23.998	0.63424	24.098	23.745	24.379	0.099739					91	60	2	0	0	0	0.27332	2	2410	2410;2445		10.074	6.1295	1	32253			1715	523	1166	1176	2344;2345	2344					0.008351498147590064
DPAKSLTEI	9	Unmodified	_DPAKSLTEI_					0	0	0		ENST00000563629.1_1_16:50783909-50820919:+|nuORF;CYLD|p.E638Rfs*9|1|0.59|ENSG00000083799|chr16:50784411-50784412|-/A|frameshift_variant;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant;nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD	ENST00000563629.1_1_16:50783909-50820919:+|nuORF	ENST00000563629.1_1_16:50783909-50820919:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.26373291015625	2	487.263665	972.512776	0.2784	0.00013565	0.072548	3.535E-05	0.35095	0.000171	487.26356582706586	62.927	0.92719	62.927	62.722	63.649	0					72	34	3	0	0	0	0.091044	1	14326	14326		34.402	2.0962	1	928510			1716	262	1167	1177	2346	2346					0.025420439694244124
DPAPIAELQL	10	Unmodified	_DPAPIAELQL_					0	0	0			REV__ENST00000436990.2_1_22:23654089-23657706:+|nuORF	REV__ENST00000436990.2_1_22:23654089-23657706:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.794677734375	2	533.792589	1065.57063	0.51935	0.00027722	2.8183	0.0015044	3.3377	0.0017816	533.7944845726447	88.235	0.6975	88.235	87.981	88.679	0					36	27	2	0	0	0	0.44496	1	21988	21988		5.7319	0.43497	1	125730	+		1717	10713	1168	1178	2347	2347					0.04046305894848956
DPASVQVRLLW	11	Unmodified	_DPASVQVRLLW_					0	0	0		ENST00000492898.1_1_1:153903201-153905153:-|nuORF;ENSG00000198837|ENST00000361217|DENND4B	ENST00000492898.1_1_1:153903201-153905153:-|nuORF	ENST00000492898.1_1_1:153903201-153905153:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3564453125	2	642.358962	1282.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.313	1	86.338	85.838	86.838	0.025169								0	0	0	0.33281	1	21225	21225		3.2813	0.54611	1				1718	5415	1169	1179	2348	2348					0.07332750351542927
DPDDHYQP	8	Unmodified	_DPDDHYQP_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2317199707031	2	493.696146	985.377739	-0.031015	-1.5312E-05	-1.5718	-0.00077597	-1.6028	-0.00079128	493.6953805051974	29.685	0.46996	29.685	29.471	29.941	0					48	22	3	0	0	0	0.3576	1	4273	4273		2.3027	0.4585	1	64423			1719	3441	1170	1180	2349	2349					-0.11553436172323472
DPDGHEICF	9	Unmodified	_DPDGHEICF_					0	0	0		ENST00000576239.5_1_17:663415-673427:-|nuORF;ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4	ENST00000576239.5_1_17:663415-673427:-|nuORF	ENST00000576239.5_1_17:663415-673427:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.70849609375	2	516.708199	1031.40185	0.47662	0.00024627	-0.14649	-7.5692E-05	0.33013	0.00017058	516.708027101545	53.637	0.80591	53.637	53.433	54.239	0					49	29	2	0	0	0	0.17247	2	11403	11403;11452		21.747	9.2151	1	248300			1720	4225	1171	1181	2350;2351	2350					-0.11259919010308295
DPDGHEICF	9	Unmodified	_DPDGHEICF_					0	0	0		ENST00000576239.5_1_17:663415-673427:-|nuORF;ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4	ENST00000576239.5_1_17:663415-673427:-|nuORF	ENST00000576239.5_1_17:663415-673427:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7084350585938	2	516.708199	1031.40185	0.46798	0.00024181	0.028734	1.4847E-05	0.49671	0.00025665	516.7081132136551	53.627	0.59691	53.693	53.466	54.063	0.06543					56	25	3	0	0	0	0.12809	2	11297	11253;11297		26.884	9.7708	1	219050			1721	4225	1171	1181	2352;2353	2353					-0.11259919010308295
DPDLGESIMK	10	Unmodified	_DPDLGESIMK_					0	0	0			REV__ENST00000541569.5_1_12:102419750-102455740:-|nuORF	REV__ENST00000541569.5_1_12:102419750-102455740:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2669677734375	2	552.765714	1103.51688	0.16819	9.297E-05	0.4447	0.00024582	0.61289	0.00033879	552.7659447762762	33.093	2.1934	33.167	32.422	34.615	0.074322					239	96	3	0	0	0	0.45945	1	5006	5006		2.9952	0	1	187640	+		1722	8887	1172	1182	2354	2354					-0.030742345991711773
DPDMVDVFMDH	11	Unmodified	_DPDMVDVFMDH_					0	0	0		FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant;FLG|p.S2719Rfs*26|1|0.08|ENSG00000143631|chr1:152306729-152306730|-/ACACC|frameshift_variant;FLG|p.Q3155Sfs*61|1|0.08|ENSG00000143631|chr1:152305423-152305423|G/-|frameshift_variant;ENSG00000143631|ENST00000368799|FLG;CON__P20930	FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.8458251953125	3	440.846018	1319.51622	0.32365	0.00014268	-0.73422	-0.00032368	-0.41057	-0.000181	440.84576588599293	52.369	0.5145	52.369	52.19	52.704	0					38	17	3	0	0	0	0.40738	1	11024	11024		2.6312	0.72486	1	127470		+	1723	222	1173	1183	2355	2355					-0.13075397310535664
DPDMVDVFMDH	11	Unmodified	_DPDMVDVFMDH_					0	0	0		FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant;FLG|p.S2719Rfs*26|1|0.08|ENSG00000143631|chr1:152306729-152306730|-/ACACC|frameshift_variant;FLG|p.Q3155Sfs*61|1|0.08|ENSG00000143631|chr1:152305423-152305423|G/-|frameshift_variant;ENSG00000143631|ENST00000368799|FLG;CON__P20930	FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	440.846018	1319.51622	0.15285	6.7381E-05	-0.1742	-7.6793E-05	-0.02135	-9.4121E-06	440.845922518366	52.309	0.40129	52.376	52.203	52.604	0.067169	0.0033652	0.00025469	NaN	2.6312	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114700		+	1724	222	1173	1183							-0.13075397310535664
DPDSHFPAWRE	11	Unmodified	_DPDSHFPAWRE_					0	0	0		nc|ENSG00000122484|Q8IXW5-2|RPAP2;RPAP2|p.N595Mfs*7|1|0.26|ENSG00000122484|chr1:92380814-92380814|A/-|frameshift_variant;ENSG00000122484|ENST00000610020|RPAP2	nc|ENSG00000122484|Q8IXW5-2|RPAP2	nc|ENSG00000122484|Q8IXW5-2|RPAP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.8797302246094	3	452.870431	1355.58946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.503	1	73.556	73.056	74.056	0.052574								0	0	0	0.34096	1	17321	17321		0.40827	0.13925	1				1725	2183	1174	1184	2356	2356					-0.0741076448136937
DPDSKEHSV	9	Unmodified	_DPDSKEHSV_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;nc|ENSG00000116830|Q9UNY4-2|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2303161621094	2	507.230353	1012.44615	-0.45299	-0.00022977	0.093644	4.7499E-05	-0.35935	-0.00018227	507.23036707004053	16.522	0.32715	16.522	16.399	16.726	0					73	41	3	0	0	0	0.28472	1	737	737		8.7454	2.5396	1	38459			1726	1977	1175	1185	2357	2357					-0.05957191592460731
DPDYICFF	8	Unmodified	_DPDYICFF_					0	0	0			REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2120361328125	2	510.212586	1018.41062	-0.252	-0.00012857	-0.86923	-0.00044349	-1.1212	-0.00057207	510.212104585196	40.378	0.81602	40.378	40.151	40.967	0					46	28	4	0	0	0	0.3576	1	7422	7422		5.2307	0	1	116470	+		1727	10702	1176	1186	2358	2358					-0.09784945373837672
DPDYICFF	8	Unmodified	_DPDYICFF_					0	0	0			REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2121276855469	2	510.212586	1018.41062	-0.10708	-5.4635E-05	-1.4123	-0.00072059	-1.5194	-0.00077523	510.21214677276356	40.305	0.84666	40.395	40.164	41.011	0.089642					43	32	3	0	0	0	0.49441	1	7261	7261		13.508	0	1	91973	+		1728	10702	1176	1186	2359	2359					-0.09784945373837672
DPEAFLVQI	9	Unmodified	_DPEAFLVQI_					0	0	0		ENSG00000120334|ENST00000682279|CENPL	ENSG00000120334|ENST00000682279|CENPL	ENSG00000120334|ENST00000682279|CENPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2742309570312	2	516.274032	1030.53351	0.83264	0.00042987	-0.1597	-8.2449E-05	0.67294	0.00034742	516.2738859070846	66.477	0.79236	66.477	66.137	66.929	0					51	30	3	0	0	0	0.24021	1	15408	15408		13.906	1.3745	1	312670			1729	2119	1177	1187	2360	2360					0.01946634349087617
DPEEDAPVL	9	Unmodified	_DPEEDAPVL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.72894287109375	2	492.729655	983.444756	0.013847	6.8227E-06	-0.31095	-0.00015321	-0.2971	-0.00014639	492.7295189960819	58.927	0.56898	58.927	58.708	59.277	0					26	20	2	0	0	0	0.17247	2	13015	13015;13061		21.747	10.106	1	237650			1730	4573	1178	1188	2361;2362	2361					-0.047628256812231484
DPEEDAPVL	9	Unmodified	_DPEEDAPVL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.72930908203125	2	492.729655	983.444756	0.22453	0.00011063	-0.55068	-0.00027134	-0.32614	-0.0001607	492.7293911828959	58.826	0.51006	58.896	58.691	59.201	0.070477					27	19	2	0	0	0	0.22344	1	12868	12868		15.847	15.847	1	205640			1731	4573	1178	1188	2363	2363					-0.047628256812231484
DPEGLSIDNL	10	Unmodified	_DPEGLSIDNL_					0	0	0			REV__ENST00000561659.5_1_16:57508703-57509771:-|nuORF	REV__ENST00000561659.5_1_16:57508703-57509771:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.75146484375	2	536.761486	1071.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.461	1	54.461	53.961	54.961	0								0	0	0	0.29565	1	11672	11672		18.146	0	1		+		1732	8966	1179	1189	2364	2364					-0.024474652441540456
DPEKSDPVI	9	Unmodified	_DPEKSDPVI_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.70013427734375	2	500.253297	998.492041	0.30897	0.00015456	-0.033686	-1.6852E-05	0.27529	0.00013771	500.2532301296085	37.596	0.90746	37.596	37.194	38.101	0					70	31	4	0	0	0	0.18321	1	6580	6580		30.703	13.261	1	265910			1733	1993	1180	1190	2365	2365					-0.007265464102374608
DPEKSDPVI	9	Unmodified	_DPEKSDPVI_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2534484863281	2	500.253297	998.492041	0.32029	0.00016023	0.078705	3.9372E-05	0.399	0.0001996	500.25324888452843	37.488	0.63858	37.573	37.321	37.96	0.084476					48	21	3	0	0	0	0.19307	1	6426	6426		19.362	6.3195	1	205720			1734	1993	1180	1190	2366	2366					-0.007265464102374608
DPENFPFVVL	10	Unmodified	_DPENFPFVVL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8009033203125	2	588.800414	1175.58628	0.44243	0.0002605	-0.027426	-1.6148E-05	0.415	0.00024435	588.8004788689383	102.03	0.49059	102.03	101.85	102.34	0					58	34	2	0	0	0	0.44938	2	26187	26187;26231		4.897	0.70751	1	111410			1735	830	1181	1191	2367;2368	2367					0.005505924119006522
DPENFPFVVL	10	Unmodified	_DPENFPFVVL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7999877929688	2	588.800414	1175.58628	0.66737	0.00039295	-0.59377	-0.00034961	0.073598	4.3334E-05	588.8001356430636	101.97	0.42917	102.02	101.88	102.31	0.042656					61	35	2	0	0	0	0.44938	1	26031	26031		4.897	0.56777	1	79720			1736	830	1181	1191	2369	2369					0.005505924119006522
DPETRRMR	8	Unmodified	_DPETRRMR_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7674560546875	2	530.769457	1059.52436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.723	1	23.723	23.223	24.223	0								0	0	0	0.38822	1	2485	2485		0.79363	0	1				1737	7458	1182	1192	2370	2370					-0.0030203748822259513
DPFMPHLP	8	Unmodified	_DPFMPHLP_					0	0	0			REV__nc|ENSG00000134769|Q9Y4J8-9|DTNA	REV__nc|ENSG00000134769|Q9Y4J8-9|DTNA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2700500488281	2	477.231113	952.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.891	1	49.964	49.464	50.464	0.07312								0	0	0	0.38822	1	10147	10147		2.5775	0	1		+		1738	9186	1183	1193	2371	2371					-0.03045229037422814
DPFPAAIIL	9	Unmodified	_DPFPAAIIL_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.776123046875	2	478.776211	955.537869	0.089621	4.2908E-05	0.18067	8.65E-05	0.27029	0.00012941	478.77617986242217	96.294	0.82213	96.294	96.002	96.824	0					89	38	4	0	0	0	0.092418	2	24400	24400;24438		34.102	20.595	1	997420			1739	4263	1184	1194	2372;2373	2372					0.058321435626680795
DPFPAAIIL	9	Unmodified	_DPFPAAIIL_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.77630615234375	2	478.776211	955.537869	0.098076	4.6957E-05	0.1644	7.8709E-05	0.26247	0.00012567	478.77619505429016	96.294	0.74661	96.333	96.037	96.784	0.039772					112	39	4	0	0	0	0.092418	3	24268	24188;24230;24268		34.102	20.595	1	941940			1740	4263	1184	1194	2374;2375;2376	2376					0.058321435626680795
DPFPLYPGEVL	11	Unmodified	_DPFPLYPGEVL_					0	0	0		ENSG00000013364|ENST00000357402|MVP;ENST00000565830.5_1_16:29841852-29843003:+|nuORF	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.821044921875	2	623.821347	1245.62814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.579	1	94.617	94.117	95.117	0.038086								0	0	0	0.31149	1	23738	23738		10.8	5.9025	1				1741	446	1185	1195	2377	2377					0.01515148100429542
DPGEGRPPI	9	Unmodified	_DPGEGRPPI_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;TICRR|p.M814Ifs*5|1|0.08|ENSG00000140534|chr15:89601849-89601850|-/TACGTAGGTTT|frameshift_variant	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.2403564453125	2	469.240524	936.466495	0.012132	5.6929E-06	-0.11286	-5.296E-05	-0.10073	-4.7267E-05	469.2404032259803	35.605	0.63457	35.605	35.334	35.969	0					39	23	2	0	0	0	0.25458	1	5991	5991		5.7319	2.1354	1	45292			1742	3019	1186	1196	2378	2378					-0.004279761419979877
DPGGGGSP	8	Unmodified	_DPGGGGSP_					0	0	0			REV__ENST00000397323.8_2_8:30242577-30332371:+|nuORF	REV__ENST00000397323.8_2_8:30242577-30332371:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.26904296875	1	643.268195	642.260919	0.63106	0.00040594	-0.067547	-4.3451E-05	0.56351	0.00036249	643.2685064332995	66.924	0.45691	66.924	66.669	67.126	0					22	16	2	0	0	0	0.54081	1	15509	15509		0.79363	0	1	161410	+		1743	11730	1187	1197	2379	2379					-0.07452129601426805
DPGHPDDPL	9	Unmodified	_DPGHPDDPL_					0	0	0		ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7142028808594	2	481.714339	961.414125	-0.099408	-4.7886E-05	1.5738	0.00075815	1.4744	0.00071026	481.71506533799334	39.301	1.1179	39.39	39.019	40.137	0.088562					65	44	3	0	0	0	0.10833	1	6925	6925		30.637	15.798	1	85582			1744	4764	1188	1198	2380	2380					-0.06812559275613239
DPGRDYEL	8	Unmodified	_DPGRDYEL_					0	0	0		ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENSG00000100296|ENST00000490103|THOC5	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7215881347656	2	482.722164	963.429775	-0.84616	-0.00040846	-0.19738	-9.5282E-05	-1.0435	-0.00050374	482.7219906513892	41.697	1.2225	41.697	41.459	42.682	0					125	43	5	0	0	0	0.18137	3	7814	7766;7814;7859		43.858	9.67	1	1282900			1745	1179	1189	1199	2381;2382;2383	2382					-0.05340272758576248
DPGRDYEL	8	Unmodified	_DPGRDYEL_					0	0	0		ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENSG00000100296|ENST00000490103|THOC5	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.72161865234375	2	482.722164	963.429775	-0.66183	-0.00031948	-0.11811	-5.7016E-05	-0.77994	-0.0003765	482.7220475851669	41.646	0.96725	41.736	41.494	42.461	0.089764					100	38	4	0	0	0	0.01727	3	7649	7612;7649;7692		85.642	34.786	1	1012500			1746	1179	1189	1199	2384;2385;2386	2385					-0.05340272758576248
DPGSEETQTL	10	Unmodified	_DPGSEETQTL_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7406616210938	2	538.740751	1075.46695	-0.37426	-0.00020163	0.70514	0.00037989	0.33088	0.00017826	538.7409780321677	42.386	0.84324	42.386	42.131	42.974	0					63	28	3	0	0	0	0.43503	1	8046	8046		7.609	0.50723	1	220430			1747	5695	1190	1200	2387	2387					-0.06776646003459064
DPGSELHTL	9	Unmodified	_DPGSELHTL_					0	0	0		OCEL1|p.Q19H|1|0.18|ENSG00000099330|chr19:17226304-17226304|G/C|missense_variant	OCEL1|p.Q19H|1|0.18|ENSG00000099330|chr19:17226304-17226304|G/C|missense_variant	OCEL1|p.Q19H|1|0.18|ENSG00000099330|chr19:17226304-17226304|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.736572265625	2	484.737814	967.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.87	1	83.87	83.37	84.37	0								0	0	0	0.28631	1	20641	20641		1.8442	0.19162	1				1748	7651	1191	1201	2388	2388					-0.023956997244795275
DPHEREFVI	9	Unmodified	_DPHEREFVI_					0	0	0		nc|ENSG00000066117|Q96GM5-2|SMARCD1;ENSG00000066117|ENST00000394963|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2850341796875	2	571.285463	1140.55637	-0.20396	-0.00011652	-0.044985	-2.5699E-05	-0.24894	-0.00014222	571.2853746916555	44.496	1.0263	44.496	44.212	45.238	0					74	36	3	0	0	0	0.24273	1	8640	8640		13.615	6.5131	1	365950			1749	695	1192	1202	2389	2389					-0.008283465334216089
DPHEREFVI	9	Unmodified	_DPHEREFVI_					0	0	0		nc|ENSG00000066117|Q96GM5-2|SMARCD1;ENSG00000066117|ENST00000394963|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2853393554688	2	571.285463	1140.55637	-0.0048304	-2.7595E-06	-0.13119	-7.4947E-05	-0.13602	-7.7707E-05	571.285285300965	44.42	0.71911	44.508	44.245	44.964	0.088345					59	25	4	0	0	0	0.24273	1	8487	8487		13.615	6.5131	1	338660			1750	695	1192	1202	2390	2390					-0.008283465334216089
DPHNIRIQ	8	Unmodified	_DPHNIRIQ_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.76446533203125	2	496.76724	991.519927	0.15968	7.9323E-05	-3.8269	-0.0019011	-3.6672	-0.0018217	496.7647463324223	21.409	0.090054	21.511	21.481	21.571	0.10178					9	8	2	0	0	0	0.53557	1	1752	1752		4.3292	0	1	27072	+		1751	10060	1193	1203	2391	2391					0.023828213605156634
DPIEMFHSGQ	10	Unmodified	_DPIEMFHSGQ_					0	0	0		ENSG00000105865|ENST00000265720|DUS4L	ENSG00000105865|ENST00000265720|DUS4L	ENSG00000105865|ENST00000265720|DUS4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2711791992188	2	580.755681	1159.49681	-0.29932	-0.00017383	1.9783	0.0011489	1.679	0.00097508	580.7567052431654	41.03	0.75017	41.03	40.656	41.407	0					45	26	2	0	0	0	0.44727	1	7707	7707		5.2969	1.7004	1	69726			1752	1491	1194	1204	2392	2392					-0.07655985539122412
DPIKEPREE	9	Unmodified	_DPIKEPREE_					0	0	0			REV__ENSG00000156831|ENST00000287437|NSMCE2	REV__ENSG00000156831|ENST00000287437|NSMCE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2421875	2	556.782753	1111.55095	0.84391	0.00046987	-2.554	-0.001422	-1.71	-0.00095212	556.7808257812449	54.788	0.46878	54.854	54.693	55.161	0.065128					30	19	2	0	0	0	0.24635	1	11688	11688		6.7232	0.51738	1	53048	+		1753	9765	1195	1205	2393	2393					-0.00036070115902475663
DPILDFNISL	10	Unmodified	_DPILDFNISL_					0	0	0		nc|ENSG00000109062|O14745-2|NHERF1;ENSG00000109062|ENST00000262613|NHERF1	nc|ENSG00000109062|O14745-2|NHERF1	nc|ENSG00000109062|O14745-2|NHERF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8056640625	2	573.805697	1145.59684	0.30347	0.00017414	-0.19098	-0.00010959	0.11249	6.455E-05	573.8054410785999	101.71	0.43034	101.71	101.53	101.96	0					73	32	3	0	0	0	0.18348	1	26091	26091		35.612	11.822	1	266990			1754	1618	1196	1206	2394	2394					0.02986575066347541
DPILDFNISL	10	Unmodified	_DPILDFNISL_					0	0	0		nc|ENSG00000109062|O14745-2|NHERF1;ENSG00000109062|ENST00000262613|NHERF1	nc|ENSG00000109062|O14745-2|NHERF1	nc|ENSG00000109062|O14745-2|NHERF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8056030273438	2	573.805697	1145.59684	0.43181	0.00024778	-0.50307	-0.00028867	-0.071257	-4.0888E-05	573.8052550893017	101.71	0.34635	101.75	101.61	101.95	0.042656					42	30	2	0	0	0	0.21799	1	25897	25897		31.636	15.897	1	329960			1755	1618	1196	1206	2395	2395					0.02986575066347541
DPITLFVAL	9	Unmodified	_DPITLFVAL_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7892761230469	2	494.789318	987.564084	0.25637	0.00012685	0.23953	0.00011852	0.4959	0.00024537	494.7892060308451	104.68	0.4166	104.68	104.53	104.94	0					65	39	2	0	0	0	0.22344	1	26936	26936		15.847	7.2539	1	103760			1756	1035	1197	1207	2396	2396					0.06980412734139918
DPITLFVAL	9	Unmodified	_DPITLFVAL_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.78961181640625	2	494.789318	987.564084	0.45661	0.00022593	0.12136	6.0049E-05	0.57798	0.00028598	494.78917445769434	104.65	0.35648	104.69	104.49	104.84	0.034004					50	37	2	0	0	0	0.092418	1	26768	26768		34.102	20.595	1	138100			1757	1035	1197	1207	2397	2397					0.06980412734139918
DPLGLPTEL	9	Unmodified	_DPLGLPTEL_					0	0	0		ENST00000355086.7_1_12:64238100-64238409:+|nuORF	ENST00000355086.7_1_12:64238100-64238409:+|nuORF	ENST00000355086.7_1_12:64238100-64238409:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7607116699219	2	477.760758	953.506963	0.14702	7.0242E-05	0.20022	9.5656E-05	0.34724	0.0001659	477.7607293337322	102.15	0.83145	102.19	101.98	102.81	0.042656					75	64	2	0	0	0	0.29576	1	26079	26079		7.2892	0.56607	1	189050			1758	6119	1198	1208	2398	2398					0.028349454577551114
DPLGYEIQL	9	Unmodified	_DPLGYEIQL_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2716064453125	2	524.27149	1046.52843	0.65227	0.00034197	-0.03099	-1.6247E-05	0.62128	0.00032572	524.2713787754876	82.031	1.1498	82.031	81.573	82.723	0					51	20	3	0	0	0	0.0022565	2	20078	20078;20120		114.2	68.181	1	1602300			1759	1710	1199	1209	2399;2400	2399					0.007023304865015234
DPLGYEIQL	9	Unmodified	_DPLGYEIQL_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2716064453125	2	524.27149	1046.52843	0.2431	0.00012745	0.37535	0.00019679	0.61845	0.00032424	524.2716124511708	82.028	1.2729	82.05	81.523	82.796	0.021866					49	18	3	0	0	0	0.0042703	2	19914	19914;19961		99.755	53.734	1	1566800			1760	1710	1199	1209	2401;2402	2401					0.007023304865015234
DPLIVRYCK	9	Unmodified	_DPLIVRYCK_					0	0	0		ENST00000338785.7_1_21:38885336-38885855:+|nuORF	ENST00000338785.7_1_21:38885336-38885855:+|nuORF	ENST00000338785.7_1_21:38885336-38885855:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8031616210938	2	553.804977	1105.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.931	1	93.931	93.431	94.431	0								0	0	0	0.23884	1	23699	23699		11.64	0	1				1761	6080	1200	1210	2403	2403					0.04682662496566081
DPLLLLTW	8	Unmodified	_DPLLLLTW_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7829895019531	2	485.784036	969.553519	0.066715	3.2409E-05	-1.7281	-0.0008395	-1.6614	-0.00080709	485.78318042402975	91.681	0.41241	91.716	91.498	91.91	0.035446					25	14	2	0	0	0	0.4772	1	22892	22892		15.847	4.2069	1	196340			1762	7560	1201	1211	2404	2404					0.06752430079700389
DPLWISLI	8	Unmodified	_DPLWISLI_					0	0	0		tr|U7T3M1|U7T3M1_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00350PE=4SV=1	tr|U7T3M1|U7T3M1_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00350PE=4SV=1	tr|U7T3M1|U7T3M1_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00350PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7764587402344	2	478.776211	955.537869	0.089621	4.2908E-05	0.18067	8.65E-05	0.27029	0.00012941	478.77617986242217	96.294	0.82213	96.294	96.002	96.824	0					89	38	4	0	0	0	0.53423	1	24561	24561		5.2307	0.47466	1	997420			1763	13710	1202	1212	2405	2405					0.058321435626680795
DPMMLHVL	8	Unmodified	_DPMMLHVL_					0	0	0			REV__ENSG00000116985|ENST00000372827|BMP8B	REV__ENSG00000116985|ENST00000372827|BMP8B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.72406005859375	2	478.240624	954.466695	-0.22211	-0.00010622	-0.20333	-9.7242E-05	-0.42544	-0.00020346	478.24070071817977	45.328	0.79715	45.416	45.237	46.034	0.087543					40	31	2	0	0	0	0.35759	1	8761	8761		9.3474	0	1	63867	+		1764	8822	1203	1213	2406	2406					-0.012360157380157943
DPMRLQKIRF	10	Unmodified	_DPMRLQKIRF_					0	0	0		nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.5830078125	3	435.248297	1302.72306	0.3522	0.00015329	0.51893	0.00022586	0.87113	0.00037916	435.5827459425961	56.797	0.75869	56.797	56.57	57.329	0					52	27	3	0	0	0	0.44859	1	12372	12372		5.0475	0.93089	1	205810			1765	4561	1204	1214	2407	2407					0.08380803090585687
DPMRLQKIRF	10	Unmodified	_DPMRLQKIRF_					0	0	0		nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2484130859375	3	435.248297	1302.72306	0.16953	7.3788E-05	0.1233	5.3667E-05	0.29283	0.00012746	435.24829675824736	56.69	0.95505	56.757	56.543	57.498	0.066448					69	35	3	0	0	0	0.38466	1	12227	12227		13.519	13.519	1	338640			1766	4561	1204	1214	2408	2408					0.08380803090585687
DPMRLQKIRF	10	Unmodified	_DPMRLQKIRF_					0	0	0		nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	435.248297	1302.72306	0.3522	0.00015329	0.51893	0.00022586	0.87113	0.00037916	435.5827459425961	56.797	0.75869	56.797	56.57	57.329	0	0.020333	0.00041977	NaN	13.519	52	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205810			1767	4561	1204	1214							0.08380803090585687
DPNLEFVAM	9	Oxidation (M)	_DPNLEFVAM(Oxidation (M))_		DPNLEFVAM(1)		DPNLEFVAM(58)	0	0	1		ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2417602539062	2	526.241875	1050.4692	0.36038	0.00018965	0.44379	0.00023354	0.80417	0.00042319	526.2417230709223	68.182	0.67545	68.182	67.882	68.558	0					56	23	3	0	0	0	0.020768	1	15845	15845		57.722	21.678	1	283590			1768	2567	1205	1215	2409	2409		164			-0.05401888799360677
DPNLEFVAM	9	Oxidation (M)	_DPNLEFVAM(Oxidation (M))_		DPNLEFVAM(1)		DPNLEFVAM(46)	0	0	1		ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2420043945312	2	526.241875	1050.4692	0.3909	0.00020571	0.28369	0.00014929	0.67459	0.000355	526.242076103603	71.192	1.0474	71.192	70.763	71.811	0					81	36	3	0	0	0	0.03918	1	16746	16746		45.7	17.213	1	236870			1769	2567	1205	1215	2410	2410		164			-0.05401888799360677
DPNRDGHVSL	10	Unmodified	_DPNRDGHVSL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2702026367188	2	555.270344	1108.52613	0.019009	1.0555E-05	-0.062614	-3.4768E-05	-0.043605	-2.4213E-05	555.2702047375544	29.071	0.77108	29.071	28.881	29.652	0					122	43	4	0	0	0	0.13912	4	4030	3989;4030;4068;4141		40.725	22.352	1	275300			1770	5313	1206	1216	2411;2412;2413;2414	2412					-0.02378705198634634
DPNRDGHVSL	10	Unmodified	_DPNRDGHVSL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2703857421875	2	555.270344	1108.52613	0.13692	7.6028E-05	-0.11057	-6.1397E-05	0.02635	1.4631E-05	555.2702140594994	28.99	0.64825	29.068	28.878	29.527	0.078289					123	43	4	0	0	0	0.16475	2	3876	3876;3913		37.771	37.771	1	281460			1771	5313	1206	1216	2415;2416	2415					-0.02378705198634634
DPPRKLEVT	9	Unmodified	_DPPRKLEVT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.249267578125	2	527.798206	1053.58186	-0.35366	-0.00018666	0.072565	3.8299E-05	-0.28109	-0.00014836	527.7981374215482	41.199	0.44597	41.289	41.067	41.513	0.089645					23	16	2	0	0	0	0.25281	1	7546	7546		6.7232	0.51738	1	100600			1772	3593	1207	1217	2417	2417					0.057211279889770594
DPRCVELTL	9	Unmodified	_DPRCVELTL_					0	0	0		CREG2|p.Q217E|1|0.21|ENSG00000175874|chr2:101355329-101355329|G/C|missense_variant	CREG2|p.Q217E|1|0.21|ENSG00000175874|chr2:101355329-101355329|G/C|missense_variant	CREG2|p.Q217E|1|0.21|ENSG00000175874|chr2:101355329-101355329|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7816772460938	2	523.270967	1044.52738	0.071232	3.7274E-05	-1.0855	-0.000568	-1.0142	-0.00053072	523.2707202486935	91.159	0.44216	91.195	90.994	91.436	0.035446					34	15	3	0	0	0	0.2298	1	22644	22644		11.64	0	1	136620			1773	245	1208	1218	2418	2418					0.006897928459011382
DPRNATSVCI	10	Carbamidomethyl (C)	_DPRNATSVC(Carbamidomethyl (C))I_	DPRNATSVC(1)I		DPRNATSVC(52)I		0	1	0		ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.774169921875	2	566.774405	1131.53426	0.1842	0.0001044	-0.71249	-0.00040382	-0.52829	-0.00029942	566.7741284259689	56.091	2.3418	56.157	55.817	58.158	0.066448					334	88	5	0	0	0	0.071862	3	12032	11991;12032;12076		51.63	51.63	1	86284000			1774	1294	1209	1219	2419;2420;2421	2420	3				-0.02624894273526479
DPSDLFWGPRW	11	Unmodified	_DPSDLFWGPRW_					0	0	0			REV__ENSG00000188389|ENST00000334409|PDCD1	REV__ENSG00000188389|ENST00000334409|PDCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2322692871094	3	459.219172	1374.63569	0.28735	0.00013195	0.96265	0.00044207	1.25	0.00057402	459.5536023976603	50.782	0.17934	50.782	50.707	50.886	0					7	5	2	0	0	0	0.40904	1	10547	10547		2.2527	0.34635	1	29942	+		1775	10769	1210	1220	2422	2422					-0.036646995793034876
DPSEPRTPV	9	Unmodified	_DPSEPRTPV_					0	0	0		nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-3|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE;ENSG00000115020|ENST00000264380|PIKFYVE	nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE	nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.25189208984375	2	499.251089	996.487624	-0.47273	-0.00023601	0.64995	0.00032449	0.17722	8.8476E-05	499.2514162884026	41.472	0.22581	41.472	41.324	41.55	0					12	7	2	0	0	0	0.29576	1	7755	7755		7.2892	0	1	34832			1776	1870	1211	1221	2423	2423					-0.010760108331396623
DPSFDDDWE	9	Unmodified	_DPSFDDDWE_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2026977539062	2	563.204001	1124.39345	-0.2035	-0.00011461	-4.2826	-0.002412	-4.4861	-0.0025266	563.7020416932023	25.342	0.82207	25.342	25.114	25.936	0					104	55	3	0	0	0	0.33704	1	2900	2900		1.8442	0.36234	1	24862	+		1777	10003	1212	1222	2424	2424					-0.16377194445954046
DPSFDDDWE	9	Unmodified	_DPSFDDDWE_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2030639648438	2	563.204001	1124.39345	-0.015958	-8.9878E-06	-4.0459	-0.0022787	-4.0618	-0.0022876	563.7022865764749	25.202	0.53521	25.298	25.097	25.632	0.096073					88	34	3	0	0	0	0.33704	2	2780	2780;2796		1.8442	0.36234	1	17146	+		1778	10003	1212	1222	2425;2426	2425					-0.16377194445954046
DPSLSPGPL	9	Unmodified	_DPSLSPGPL_					0	0	0			REV__ENST00000509591.1_1_5:138725014-138725390:-|nuORF	REV__ENST00000509591.1_1_5:138725014-138725390:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.7320251464844	2	441.732	881.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.605	1	73.605	73.105	74.105	0								0	0	0	0.27427	1	17506	17506		4.3292	0	1		+		1779	12250	1213	1223	2427	2427					0.003981032521778616
DPSNIYNLT	9	Unmodified	_DPSNIYNLT_					0	0	0			REV__ENSG00000097096|ENST00000341460|SYDE2	REV__ENSG00000097096|ENST00000341460|SYDE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7329711914062	2	518.750921	1035.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.119	1	53.185	52.685	53.685	0.06543								0	0	0	0.19984	1	11126	11126		18.146	1.0335	1		+		1780	8351	1214	1224	2428	2428					-0.029034305530103666
DPSTPVHIL	9	Unmodified	_DPSTPVHIL_					0	0	0		ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7674255371094	2	489.766374	977.518196	0.28028	0.00013727	1.5061	0.00073763	1.7864	0.0008749	489.7670768912386	96.274	0.48642	96.274	96.028	96.515	0					38	22	2	0	0	0	0.26684	1	24441	24441		10.824	2.0785	1	198320			1781	3885	1215	1225	2429	2429					0.028537675519032746
DPSTPVHIL	9	Unmodified	_DPSTPVHIL_					0	0	0		ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7670593261719	2	489.766374	977.518196	0.28831	0.00014121	1.3006	0.00063698	1.5889	0.00077818	489.76710471404107	96.287	0.48924	96.326	96.037	96.527	0.039772					44	27	2	0	0	0	0.23216	2	24284	24239;24284		14.838	5.4551	1	190190			1782	3885	1215	1225	2430;2431	2431					0.028537675519032746
DPTDVAALR	9	Unmodified	_DPTDVAALR_					0	0	0		ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2536315917969	2	479.253631	956.49271	-0.62752	-0.00030074	1.4162	0.00067874	0.78872	0.000378	479.2544591875508	42.586	0.69319	42.586	42.305	42.999	0					35	23	2	0	0	0	0.005983	2	8063	8063;8095		79.596	45.195	1	100910			1783	2321	1216	1226	2432;2433	2432					0.012722930294671642
DPTDVAALR	9	Unmodified	_DPTDVAALR_					0	0	0		ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.253173828125	2	479.253631	956.49271	-0.48602	-0.00023293	0.71717	0.00034371	0.23115	0.00011078	479.2538752032653	42.51	0.49619	42.6	42.342	42.838	0.089764					29	17	2	0	0	0	0.032194	2	7916	7916;7965		49.554	32.612	1	68312			1784	2321	1216	1226	2434;2435	2434					0.012722930294671642
DPTFSLMF	8	Unmodified	_DPTFSLMF_					0	0	0		ATAD5|p.G1347D|1|0.12|ENSG00000176208|chr17:30879450-30879450|G/A|missense_variant;ENSG00000176208|ENST00000321990|ATAD5	ATAD5|p.G1347D|1|0.12|ENSG00000176208|chr17:30879450-30879450|G/A|missense_variant	ATAD5|p.G1347D|1|0.12|ENSG00000176208|chr17:30879450-30879450|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2754821777344	2	479.222954	956.431355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.769	1	82.769	82.269	83.269	0								0	0	0	0.38822	1	20306	20306		13.508	4.1604	1				1785	63	1217	1227	2436	2436					-0.04860354994161753
DPTPQHYPS	9	Unmodified	_DPTPQHYPS_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000521361.5_1_6:112040873-112041254:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7372436523438	2	521.235439	1040.45632	-0.14346	-7.4777E-05	0.21607	0.00011262	0.072612	3.7848E-05	521.2354983100134	27.545	0.41165	27.545	27.407	27.818	0					48	35	2	0	0	0	0.33849	1	3580	3580		1.6526	1.6526	1	137400			1786	416	1218	1228	2437	2437					-0.06228583867255111
DPTPQHYPS	9	Unmodified	_DPTPQHYPS_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000521361.5_1_6:112040873-112041254:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	521.235439	1040.45632	-0.14346	-7.4777E-05	0.21607	0.00011262	0.072612	3.7848E-05	521.2354983100134	27.545	0.41165	27.545	27.407	27.818	0	0.020313	0.00023245	NaN	1.6526	48	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137400			1787	416	1218	1228							-0.06228583867255111
DPTPQHYPS	9	Unmodified	_DPTPQHYPS_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000521361.5_1_6:112040873-112041254:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	521.235439	1040.45632	-0.16699	-8.704E-05	-0.18163	-9.467E-05	-0.34861	-0.00018171	521.2352066217353	27.418	0.41056	27.504	27.323	27.734	0.0867	-0.020313	-0.00018214	NaN	1.6526	57	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184700			1788	416	1218	1228							-0.06228583867255111
DPTSSSPCPLL	11	Unmodified	_DPTSSSPCPLL_					0	0	0			REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF	REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7651977539062	2	558.765714	1115.51688	0.76192	0.00042573	-1.158	-0.00064705	-0.39609	-0.00022132	558.7648834081842	79.804	0.51904	79.804	79.59	80.109	0					44	17	4	0	0	0	0.1251	2	19392	19392;19441		41.84	12.758	1	316140	+		1789	12448	1219	1229	2438;2439	2438					-0.036262345991644906
DPTSSSPCPLL	11	Unmodified	_DPTSSSPCPLL_					0	0	0			REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF	REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.76611328125	2	558.765714	1115.51688	0.56869	0.00031776	-1.3478	-0.00075312	-0.77914	-0.00043536	558.764884618845	79.789	0.53128	79.815	79.599	80.131	0.026436					42	18	3	0	0	0	0.21662	1	19226	19226		27.629	8.1898	1	333770	+		1790	12448	1219	1229	2440	2440					-0.036262345991644906
DPTSSSPCPLL	11	Unmodified	_DPTSSSPCPLL_					0	0	0			REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF	REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	558.765714	1115.51688	0.76192	0.00042573	-1.158	-0.00064705	-0.39609	-0.00022132	558.7648834081842	79.804	0.51904	79.804	79.59	80.109	0	-0.0056893	8.6102E-05	NaN	41.84	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316140	+		1791	12448	1219	1229							-0.036262345991644906
DPTSSSPCPLL	11	Unmodified	_DPTSSSPCPLL_					0	0	0			REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF	REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	558.765714	1115.51688	0.56869	0.00031776	-1.3478	-0.00075312	-0.77914	-0.00043536	558.764884618845	79.789	0.53128	79.815	79.599	80.131	0.026436	0.0056893	-0.00012603	NaN	41.84	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333770	+		1792	12448	1219	1229							-0.036262345991644906
DPTVHDDVL	9	Unmodified	_DPTVHDDVL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;chr8:47858980-47859611|272|13.27|0.78|4.09|-|0|None,PRKDC|1	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7427673339844	2	505.743096	1009.47164	-0.28761	-0.00014546	-0.54174	-0.00027398	-0.82935	-0.00041944	505.7429651726924	44.958	0.45788	44.958	44.747	45.205	0					27	16	2	0	0	0	0.29576	1	8773	8773		7.2892	2.0586	1	109380			1793	5692	1220	1230	2441	2441					-0.03271717070037994
DPTVHDDVL	9	Unmodified	_DPTVHDDVL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;chr8:47858980-47859611|272|13.27|0.78|4.09|-|0|None,PRKDC|1	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.74310302734375	2	505.743096	1009.47164	-0.028143	-1.4233E-05	-0.070815	-3.5814E-05	-0.098958	-5.0048E-05	505.7429709380684	44.837	0.39859	44.925	44.783	45.181	0.087543					30	14	3	0	0	0	0.29576	1	8642	8642		7.2892	0.56607	1	74991			1794	5692	1220	1230	2442	2442					-0.03271717070037994
DPVAWLSRLL	10	Unmodified	_DPVAWLSRLL_					0	0	0		ENST00000392470.6_1_3:187003724-187009056:-|nuORF;ENST00000337774.9_2_3:187003724-187009559:-|nuORF;ENST00000392475.2_1_3:187003724-187009559:-|nuORF	ENST00000392470.6_1_3:187003724-187009056:-|nuORF	ENST00000392470.6_1_3:187003724-187009056:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.3118286132812	2	585.337498	1168.66044	0.2432	0.00014235	-0.68292	-0.00039974	-0.43973	-0.00025739	585.3370571340917	46.202	0.31163	46.202	46.039	46.351	0					17	10	2	0	0	0	0.31761	1	9133	9133		5.2969	0	1	51269			1795	6078	1221	1231	2443	2443					0.08285980294067485
DPVAWLSRLL	10	Unmodified	_DPVAWLSRLL_					0	0	0		ENST00000392470.6_1_3:187003724-187009056:-|nuORF;ENST00000337774.9_2_3:187003724-187009559:-|nuORF;ENST00000392475.2_1_3:187003724-187009559:-|nuORF	ENST00000392470.6_1_3:187003724-187009056:-|nuORF	ENST00000392470.6_1_3:187003724-187009056:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	585.337498	1168.66044	0.4278	0.00025041	-0.21235	-0.0001243	0.21544	0.00012611	585.3374741654734	46.041	0.32458	46.126	45.98	46.304	0.085617	-0.037973	0.00025127	NaN	5.2969	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62084			1796	6078	1221	1231							0.08285980294067485
DPVDPEDSVDL	11	Unmodified	_DPVDPEDSVDL_					0	0	0		nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;ENSG00000166049|ENST00000370357|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.7681274414062	2	600.766965	1199.51938	-0.054881	-3.2971E-05	0.65485	0.00039342	0.59997	0.00036044	600.7670580226709	29.656	0.43464	29.656	29.488	29.923	0					53	20	4	0	0	0	0.41369	1	4170	4170		1.1933	0.66858	1	92328			1797	4128	1222	1232	2444	2444					-0.07240107660504691
DPWEPCWPH	9	Unmodified	_DPWEPCWPH_					0	0	0		ENSG00000154274|ENST00000381980|C4orf19	ENSG00000154274|ENST00000381980|C4orf19	ENSG00000154274|ENST00000381980|C4orf19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3143310546875	2	583.739834	1165.46511	0.54512	0.00031821	0.20434	0.00011928	0.74946	0.00043749	583.7398880424802	95.516	0.74981	95.555	95.287	96.036	0.038864					134	35	6	0	0	0	0.3354	1	24002	24002		2.0598	0.86641	1	5349700			1798	3552	1223	1233	2445	2445					-0.11099933502418935
DPYFTPIPVL	10	Unmodified	_DPYFTPIPVL_					0	0	0		ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.8148803710938	2	581.313158	1160.61176	0.51126	0.0002972	-0.371	-0.00021567	0.14026	8.1533E-05	581.3129710202438	96.473	0.53241	96.473	96.318	96.851	0					46	24	3	0	0	0	0.33099	1	24505	24505		19.257	5.3509	1	475860			1799	1383	1224	1234	2446	2446					0.0378806693433944
DPYFTPIPVL	10	Unmodified	_DPYFTPIPVL_					0	0	0		ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3139038085938	2	581.313158	1160.61176	0.61536	0.00035771	-0.22146	-0.00012874	0.3939	0.00022898	581.3129488923388	96.463	0.4786	96.503	96.305	96.784	0.039772					57	25	3	0	0	0	0.33099	1	24294	24294		19.257	0.88389	1	296920			1800	1383	1224	1234	2447	2447					0.0378806693433944
DPYSDDPRL	9	Unmodified	_DPYSDDPRL_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.S495F|1|0.33|ENSG00000073350|chr17:75569228-75569228|C/T|missense_variant;ENSG00000131899|ENST00000316843|LLGL1	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2451171875	2	539.246003	1076.47745	-0.068092	-3.6718E-05	-0.099729	-5.3779E-05	-0.16782	-9.0497E-05	539.245809269626	43.666	0.65064	43.666	43.263	43.913	0					46	23	3	0	0	0	0.2125	1	8401	8401		17.113	17.113	1	79646			1801	795	1225	1235	2448	2448					-0.057726185583760525
DPYSDDPRL	9	Unmodified	_DPYSDDPRL_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.S495F|1|0.33|ENSG00000073350|chr17:75569228-75569228|C/T|missense_variant;ENSG00000131899|ENST00000316843|LLGL1	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2450561523438	2	539.246003	1076.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.55	1	43.639	43.139	44.139	0.088924								0	0	0	0.21325	1	8238	8238		16.149	7.4037	1				1802	795	1225	1235	2449	2449					-0.057726185583760525
DQAKLQGTT	9	Unmodified	_DQAKLQGTT_					0	0	0		MMP28|p.A495G|1|0.2|ENSG00000271447|chr17:35766579-35766579|G/C|missense_variant	MMP28|p.A495G|1|0.2|ENSG00000271447|chr17:35766579-35766579|G/C|missense_variant	MMP28|p.A495G|1|0.2|ENSG00000271447|chr17:35766579-35766579|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.25213623046875	2	481.251089	960.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.502	1	28.502	28.002	29.002	0								0	0	0	0.28631	1	3857	3857		1.8442	0	1				1803	7433	1226	1236	2450	2450					0.005799891668516466
DQARLPPAF	9	Unmodified	_DQARLPPAF_					0	0	0			REV__ENST00000585905.1_1_19:45898523-45909561:-|nuORF	REV__ENST00000585905.1_1_19:45898523-45909561:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7712097167969	2	507.771991	1013.52943	-0.50977	-0.00025885	-0.078074	-3.9644E-05	-0.58785	-0.00029849	507.7717524664613	42.364	0.38286	42.364	42.162	42.545	0					20	12	2	0	0	0	0.30757	1	8017	8017		5.7319	0	1	43634	+		1804	8519	1227	1237	2451	2451					0.023205896460240183
DQDGKGQLN	9	Unmodified	_DQDGKGQLN_					0	0	0			REV__ENSG00000162771|ENST00000294829|GARIN4	REV__ENSG00000162771|ENST00000294829|GARIN4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.9350891113281	2	487.73052	973.446488	-0.59725	-0.0002913	-3.7858	-0.0018464	-4.383	-0.0021377	487.7284894741383	42.369	0.4884	42.369	42.193	42.682	0					19	16	2	0	0	0	0.25052	1	8021	8021		8.7454	0.58988	1	32901	+		1805	9908	1228	1238	2452	2452					-0.04129771872624133
DQDGRYRSL	9	Unmodified	_DQDGRYRSL_					0	0	0			REV__ENST00000599899.5_1_19:6677895-6682275:-|nuORF	REV__ENST00000599899.5_1_19:6677895-6682275:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2703857421875	2	555.270344	1108.52613	0.13692	7.6028E-05	-0.11057	-6.1397E-05	0.02635	1.4631E-05	555.2702140594994	28.99	0.64825	29.068	28.878	29.527	0.078289					123	43	4	0	0	0	0.32831	1	3839	3839		2.9952	2.9952	1	281460	+		1806	12620	1229	1239	2453	2453					-0.02378705198634634
DQGERPPLV	9	Unmodified	_DQGERPPLV_					0	0	0		nc|ENSG00000167077|Q5TIA1-3|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1;MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1	nc|ENSG00000167077|Q5TIA1-3|MEI1	nc|ENSG00000167077|Q5TIA1-3|MEI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7662658691406	2	505.766906	1009.51926	0.2465	0.00012467	-0.25568	-0.00012931	-0.009174	-4.6399E-06	505.7666721182483	37.582	0.72007	37.666	37.445	38.165	0.084476					60	24	4	0	0	0	0.30005	1	6546	6546		6.7232	0	1	317490			1807	4197	1230	1240	2454	2454					0.014879819207976652
DQQFVEFVLP	10	Unmodified	_DQQFVEFVLP_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.311279296875	2	611.311146	1220.60774	0.17972	0.00010986	0.061814	3.7788E-05	0.24153	0.00014765	611.3109548782363	56.237	0.78751	56.304	55.948	56.735	0.066448					76	29	4	0	0	0	0.43214	1	12034	12034		8.1555	0	1	446460	+		1808	10974	1231	1241	2455	2455					0.006259774406316865
DQRYPRNVI	9	Unmodified	_DQRYPRNVI_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2403564453125	2	580.812179	1159.60981	0.33416	0.00019408	-0.63751	-0.00037028	-0.30336	-0.00017619	580.8115453467584	35.489	0.22491	35.568	35.457	35.682	0.078827					12	7	2	0	0	0	0.259	1	5814	5814		1.6526	0.32309	1	21042			1809	606	1232	1242	2456	2456					0.03638450969083351
DQSLVAIPME	10	Unmodified	_DQSLVAIPME_					0	0	0		ENSG00000185863|ENST00000413619|TMEM210	ENSG00000185863|ENST00000413619|TMEM210	ENSG00000185863|ENST00000413619|TMEM210	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2926635742188	2	551.776082	1101.53761	0.50458	0.00027841	3.859	0.0021293	4.3635	0.0024077	551.7779302409948	100.64	0.23392	100.64	100.48	100.72	0					15	13	2	0	0	0	0.41688	1	25729	25729		10.074	2.9722	1	30278			1810	5049	1233	1243	2457	2457					-0.009096442194959309
DQSPPLCQIKP	11	Unmodified	_DQSPPLCQIKP_					0	0	0			REV__ENST00000028008.9_1_6:167343078-167365992:-|nuORF	REV__ENST00000028008.9_1_6:167343078-167365992:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.2263488769531	3	409.213029	1224.61726	0.14344	5.8699E-05	-0.0025859	-1.0582E-06	0.14086	5.7641E-05	409.2130426184503	37.962	1.1162	38.046	37.445	38.561	0.084476					116	39	4	0	0	0	0.39319	1	6609	6609		5.8681	1.6786	1	112420	+		1811	8005	1234	1244	2458	2458					0.013934224544755125
DQSSNYDQSR	10	Unmodified	_DQSSNYDQSR_					0	0	0			REV__SEMA4G|p.G386D|1|0.47|ENSG00000095539|chr10:100980150-100980150|G/A|missense_variant	REV__SEMA4G|p.G386D|1|0.47|ENSG00000095539|chr10:100980150-100980150|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.2523803710938	2	600.249805	1198.48506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.859	1	86.886	86.386	87.386	0.027573								0	0	0	0.33711	1	21393	21393		3.5965	0.60125	1		+		1812	12984	1235	1245	2459	2459					-0.10624511028777306
DQYCKDHF	8	Unmodified	_DQYCKDHF_					0	0	0		NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2167358398438	2	528.216192	1054.41783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.016	1	70.076	69.576	70.576	0.060562								0	0	0	0.38822	1	16257	16257		2.3027	0	1				1813	3363	1236	1246	2460	2460					-0.10720212773435378
DQYFEHVL	8	Unmodified	_DQYFEHVL_					0	0	0			REV__ENSG00000257743|ENST00000477922|MGAM2	REV__ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2962646484375	2	525.748182	1049.48181	0.32234	0.00016947	1.9419	0.0010209	2.2642	0.0011904	525.7491963756837	91.124	0.29343	91.124	90.858	91.152	0					16	9	2	0	0	0	0.3528	1	22822	22822		18.135	0	1	75170	+		1814	11101	1237	1247	2461	2461					-0.04095109344825687
DRDTDYTDW	9	Unmodified	_DRDTDYTDW_					0	0	0			REV__ENSG00000142552|ENST00000270645|RCN3	REV__ENSG00000142552|ENST00000270645|RCN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.2372436523438	2	593.736	1185.45745	0.44477	0.00026408	-1.8408	-0.001093	-1.396	-0.00082887	593.7346623817856	63.047	1.0415	63.047	62.752	63.793	0					69	38	2	0	0	0	0.3354	1	14310	14310		2.0598	0.21551	1	755020	+		1815	9435	1238	1248	2462	2462					-0.12786414289007553
DREYALFSY	9	Unmodified	_DREYALFSY_					0	0	0		ENST00000496611.1_1_7:154002507-154378881:+|nuORF;nc|ENSG00000130226|P42658-2|DPP6;ENSG00000130226|ENST00000377770|DPP6	ENST00000496611.1_1_7:154002507-154378881:+|nuORF	ENST00000496611.1_1_7:154002507-154378881:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2728881835938	2	582.272021	1162.52949	0.65054	0.00037879	0.47768	0.00027814	1.1282	0.00065693	582.2728241919114	102.86	0.64209	102.9	102.63	103.27	0.040909					110	55	3	0	0	0	0.33849	1	26222	26222		1.6526	0	1	90999			1816	2458	1239	1249	2463	2463					-0.04527455144625492
DRFFMWIFF	9	Unmodified	_DRFFMWIFF_					0	0	0		ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.8791198730469	3	436.879322	1307.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.686	1	33.686	33.186	34.186	0								0	0	0	0.29058	1	5392	5392		0.96228	0.18574	1				1817	4578	1240	1250	2464	2464					-0.025367471237814243
DRFFMWIFF	9	Unmodified	_DRFFMWIFF_					0	0	0		ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.879638671875	3	436.879322	1307.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.558	1	81.558	81.058	82.058	0								0	0	0	0.27152	1	19938	19938		4.897	3.4419	1				1818	4578	1240	1250	2465	2465					-0.025367471237814243
DRFFMWIFF	9	Unmodified	_DRFFMWIFF_					0	0	0		ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2572326660156	3	436.879322	1307.61614	0.44178	0.000193	1.223	0.00053432	1.6648	0.00072732	437.21452714185097	90.741	1.0712	90.741	90.138	91.209	0					57	40	2	0	0	0	0.25974	1	22584	22584		0.20686	0.083992	1	167940			1819	4578	1240	1250	2466	2466					-0.025367471237814243
DRFFMWIFF	9	Unmodified	_DRFFMWIFF_					0	0	0		ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.8796691894531	3	436.879322	1307.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.014	1	68.077	67.577	68.577	0.063507								0	0	0	0.29058	1	15650	15650		0.96228	0.18574	1				1820	4578	1240	1250	2467	2467					-0.025367471237814243
DRFFMWIFF	9	Unmodified	_DRFFMWIFF_					0	0	0		ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.87921142578125	3	436.879322	1307.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.208	1	71.267	70.767	71.767	0.058578								0	0	0	0.28314	1	16620	16620		2.4985	0.41248	1				1821	4578	1240	1250	2468	2468					-0.025367471237814243
DRFFMWIFF	9	Unmodified	_DRFFMWIFF_					0	0	0		ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.87969970703125	3	436.879322	1307.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.545	1	80.569	80.069	81.069	0.023605								0	0	0	0.29058	1	19469	19469		0.96228	0.33545	1				1822	4578	1240	1250	2469	2469					-0.025367471237814243
DRGGSPSM	8	Unmodified	_DRGGSPSM_					0	0	0		nc|ENSG00000161180|Q8IYX3-1|CCDC116;nc|ENSG00000161180|Q8IYX3-3|CCDC116;ENSG00000161180|ENST00000292779|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.6768798828125	2	403.676702	805.338851	-0.080697	-3.2576E-05	0.67774	0.00027359	0.59704	0.00024101	403.6770218184842	35.02	0.68404	35.099	34.912	35.596	0.078831					41	27	2	0	0	0	0.53858	1	5666	5666		2.3027	0	1	42275			1823	3792	1241	1251	2470	2470					-0.07160440007692159
DRGLCRDCTF	10	Unmodified	_DRGLCRDCTF_					0	0	0			REV__ENST00000487651.5_1_7:100456676-100456913:+|nuORF	REV__ENST00000487651.5_1_7:100456676-100456913:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2606201171875	2	593.260607	1184.50666	0.34049	0.000202	1.6197	0.00096093	1.9602	0.0011629	593.2605178479683	75.381	0.41052	75.425	75.209	75.619	0.044037					47	14	4	0	0	0	0.34796	1	17879	17879		17.443	2.6044	1	659140	+		1824	12129	1242	1252	2471	2471					-0.07821120805397186
DRKYNGIE	8	Unmodified	_DRKYNGIE_					0	0	0		tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7512512207031	2	497.751256	993.487959	-0.25034	-0.00012461	0.17603	8.762E-05	-0.074306	-3.6986E-05	497.7512842938208	19.05	0.24352	19.05	18.935	19.178	0					46	29	2	0	0	0	0.53926	1	1247	1247		1.8442	0	1	20029			1825	13551	1243	1253	2472	2472					-0.009045911132830042
DRLCPFWK	8	Unmodified	_DRLCPFWK_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7699584960938	2	532.770937	1063.52732	-0.34822	-0.00018552	-1.6737	-0.00089172	-2.022	-0.0010772	532.7699835018258	16.104	0.18923	16.104	16.028	16.218	0					39	22	2	0	0	0	0.53894	1	671	671		2.0598	0.57785	1	29322			1826	4692	1244	1254	2473	2473					-0.0019016236342395132
DRNNEMSGLF	10	Unmodified	_DRNNEMSGLF_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.7642211914062	2	591.764037	1181.51352	0.51491	0.0003047	0.0046236	2.7361E-06	0.51953	0.00030744	592.2655599322969	65.057	0.49297	65.126	64.959	65.452	0.068916					23	18	2	0	0	0	0.4101	1	14786	14786		10.8	0.72558	1	247550	+		1827	8145	1245	1255	2474	2474					-0.06997484653174979
DRNNEMSGLF	10	Unmodified	_DRNNEMSGLF_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	591.764037	1181.51352	0.64356	0.00038084	0.92956	0.00055008	1.5731	0.00093092	591.7642159328227	65.119	0.47492	65.119	64.897	65.372	0	-0.0034585	0.00059762	NaN	10.8	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163270	+		1828	8145	1245	1255							-0.06997484653174979
DRNNEMSGLF	10	Unmodified	_DRNNEMSGLF_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	591.764037	1181.51352	0.51491	0.0003047	0.0046236	2.7361E-06	0.51953	0.00030744	592.2655599322969	65.057	0.49297	65.126	64.959	65.452	0.068916	0.0034585	-0.00049707	NaN	10.8	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247550	+		1829	8145	1245	1255							-0.06997484653174979
DRNPYPRPPV	10	Unmodified	_DRNPYPRPPV_					0	0	0		ENST00000366628.9_1_1:233086394-233086478:+|nuORF	ENST00000366628.9_1_1:233086394-233086478:+|nuORF	ENST00000366628.9_1_1:233086394-233086478:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8206787109375	2	605.820004	1209.62546	0.17248	0.00010449	0.10278	6.2266E-05	0.27526	0.00016676	605.820005476678	31.445	0.74185	31.445	31.215	31.957	0					86	32	4	0	0	0	0.47199	1	4855	4855		1.4819	1.0236	1	110740			1830	6168	1246	1256	2475	2475					0.029027374861243516
DRPARHEL	8	Unmodified	_DRPARHEL_					0	0	0			REV__ENSG00000176407|ENST00000409785|KCMF1	REV__ENSG00000176407|ENST00000409785|KCMF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2650146484375	2	497.264865	992.515176	0.47911	0.00023824	0.33107	0.00016463	0.81018	0.00040287	497.2649291440573	74.725	0.69649	74.773	74.45	75.147	0.048546					37	24	2	0	0	0	0.32174	1	17716	17716		30.225	3.3412	1	615330	+		1831	10403	1247	1257	2476	2476					0.018619372177454352
DRPRATWI	8	Unmodified	_DRPRATWI_					0	0	0		sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7775573730469	2	507.777608	1013.54066	0.59738	0.00030334	0.23148	0.00011754	0.82886	0.00042087	507.7774790524781	85.051	0.59726	85.051	84.838	85.435	0					30	19	3	0	0	0	0.39599	1	21036	21036		26.884	0.54238	1	114420			1832	13392	1248	1258	2477	2477					0.03443411740170177
DRRHFKRMRF	10	Unmodified	_DRRHFKRMRF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.59857177734375	3	483.598323	1447.77314	-0.20462	-9.8955E-05	-0.51845	-0.00025072	-0.72307	-0.00034968	483.5981633161564	45.647	0.36497	45.732	45.549	45.914	0.085617					30	13	3	0	0	0	0.47199	1	8908	8908		0.62683	0.12087	1	53863			1833	4573	1249	1259	2478	2478					0.06716350539113591
DRRRRFAL	8	Unmodified	_DRRRRFAL_					0	0	0			REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF	REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3225708007812	2	545.323048	1088.63154	-0.27763	-0.0001514	-1.1106	-0.00060561	-1.3882	-0.00075701	545.3224199910705	21.203	0.1992	21.203	21.117	21.317	0					31	21	2	0	0	0	0.54097	1	1783	1783		0.69038	0	1	19957	+		1834	8265	1250	1260	2479	2479					0.09077300508306507
DRRRRFAL	8	Unmodified	_DRRRRFAL_					0	0	0			REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF	REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3221435546875	2	545.323048	1088.63154	0.091584	4.9943E-05	-1.3588	-0.00074098	-1.2672	-0.00069104	545.3222696086126	21.025	0.24116	21.124	21.018	21.259	0.099499					32	27	2	0	0	0	0.54097	1	1641	1641		0.69038	0	1	22130	+		1835	8265	1250	1260	2480	2480					0.09077300508306507
DRRRRFAL	8	Unmodified	_DRRRRFAL_					0	0	0			REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF	REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	545.323048	1088.63154	-0.27763	-0.0001514	-1.1106	-0.00060561	-1.3882	-0.00075701	545.3224199910705	21.203	0.1992	21.203	21.117	21.317	0	0.039325	0.0002011	NaN	0.69038	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19957	+		1836	8265	1250	1260							0.09077300508306507
DRRRRFAL	8	Unmodified	_DRRRRFAL_					0	0	0			REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF	REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.323048	1088.63154	0.091584	4.9943E-05	-1.3588	-0.00074098	-1.2672	-0.00069104	545.3222696086126	21.025	0.24116	21.124	21.018	21.259	0.099499	-0.039325	-6.9643E-05	NaN	0.69038	32	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22130	+		1837	8265	1250	1260							0.09077300508306507
DRSNESIKHN	10	Unmodified	_DRSNESIKHN_					0	0	0		ENSG00000140557|ENST00000268164|ST8SIA2	ENSG00000140557|ENST00000268164|ST8SIA2	ENSG00000140557|ENST00000268164|ST8SIA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3094482421875	2	600.291808	1198.56906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.533	1	63.604	63.104	64.104	0.071018								0	0	0	0.32971	1	14295	14295		12.241	1.4167	1				1838	3023	1251	1261	2481	2481					-0.02227935141195303
DRSWFLTI	8	Unmodified	_DRSWFLTI_					0	0	0			REV__ENST00000417073.2_1_17:8079275-8079655:-|nuORF	REV__ENST00000417073.2_1_17:8079275-8079655:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.8030395507812	2	519.274367	1036.53418	0.4447	0.00023092	1.2874	0.0006685	1.7321	0.00089942	519.2749423525152	68.469	0.45876	68.469	68.158	68.617	0					27	15	3	0	0	0	0.34111	1	15903	15903		20.454	0	1	155880	+		1839	10470	1252	1262	2482	2482					0.017374737888076197
DRTKFLAVVM	10	Unmodified	_DRTKFLAVVM_					0	0	0			REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3317260742188	2	590.331359	1178.64816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.07	1	107.09	106.59	107.59	0.025711								0	0	0	0.33762	1	27424	27424		2.9952	0.26005	1		+		1840	11083	1253	1263	2483	2483					0.06598620559361734
DRTKFLAVVM	10	Unmodified	_DRTKFLAVVM_					0	0	0			REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3326416015625	2	590.331359	1178.64816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.28	1	107.3	106.8	107.8	0.025711								0	0	0	0.33528	1	27481	27481		5.7319	1.7875	1		+		1841	11083	1253	1263	2484	2484					0.06598620559361734
DRYPSHFTL	9	Unmodified	_DRYPSHFTL_					0	0	0			REV__ENST00000465679.5_1_10:88718421-88722579:+|nuORF	REV__ENST00000465679.5_1_10:88718421-88722579:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7279052734375	2	568.28018	1134.54581	0.25205	0.00014323	-1.7323	-0.00098441	-1.4802	-0.00084118	568.2790184230937	83.049	0.42634	83.071	82.877	83.304	0.021744					22	14	2	0	0	0	0.24635	1	20284	20284		10.824	0.75	1	104760	+		1842	11991	1254	1264	2485	2485					-0.0160832918786582
DRYSCYQEL	9	Unmodified	_DRYSCYQEL_					0	0	0		ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3432006835938	2	588.753138	1175.49172	0.37123	0.00021856	-1.5552	-0.00091562	-1.184	-0.00069706	588.7524804250545	87.224	0.096207	87.224	87.141	87.237	0					5	3	2	0	0	0	0.20194	1	21650	21650		24.021	9.1823	1	79459			1843	3330	1255	1265	2486	2486					-0.08900289401731243
DRYWVFKDNN	10	Unmodified	_DRYWVFKDNN_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.8807678222656	3	452.882559	1355.62585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.764	1	95.803	95.303	96.303	0.038872								0	0	0	0.33965	1	24101	24101		0.62683	0.12087	1				1844	5383	1256	1266	2487	2487					-0.03773887584657132
DSANDGFVRL	10	Unmodified	_DSANDGFVRL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2672729492188	2	547.26727	1092.51999	0.57816	0.00031641	-0.47008	-0.00025726	0.10808	5.9147E-05	547.2670978526569	55.09	1.2667	55.09	54.827	56.094	0					80	45	2	0	0	0	2.8967E-32	2	11875	11875;11923		224.51	182.67	1	9615300			1845	4358	1257	1267	2488;2489	2488					-0.022572234301151184
DSANDGFVRL	10	Unmodified	_DSANDGFVRL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2677612304688	2	547.26727	1092.51999	0.58973	0.00032274	-0.14447	-7.9065E-05	0.44526	0.00024367	547.2673372351646	55.038	1.1429	55.103	54.779	55.922	0.065128					144	44	5	0	0	0	4.0581E-23	2	11752	11693;11752		197.86	156.02	1	7129300			1846	4358	1257	1267	2490;2491	2491					-0.022572234301151184
DSAPERKSP	9	Unmodified	_DSAPERKSP_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7484436035156	2	493.748713	985.482873	-0.11274	-5.5663E-05	0.11423	5.6403E-05	0.0014979	7.396E-07	493.7485919584465	24.774	0.97437	24.774	24.296	25.271	0					136	75	2	0	0	0	0.33978	1	2779	2779		1.4819	0	1	45125			1847	2591	1258	1268	2492	2492					-0.010448949758938397
DSAPVETPR	9	Unmodified	_DSAPVETPR_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2431945800781	2	486.243264	970.471974	-0.35465	-0.00017245	0.56407	0.00027428	0.20942	0.00010183	486.2434828521825	28.71	0.56513	28.71	28.405	28.971	0					64	27	3	0	0	0	0.056368	1	3920	3920		41.956	12.874	1	151210			1848	1178	1259	1269	2493	2493					-0.014442973502013956
DSAPVETPR	9	Unmodified	_DSAPVETPR_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2433776855469	2	486.243264	970.471974	-0.32483	-0.00015795	0.67395	0.0003277	0.34911	0.00016975	486.2435497557295	28.624	0.56476	28.706	28.399	28.964	0.082132					74	34	3	0	0	0	0.14444	1	3767	3767		24.991	11.085	1	119070			1849	1178	1259	1269	2494	2494					-0.014442973502013956
DSATPSVQARY	11	Unmodified	_DSATPSVQARY_					0	0	0			REV__nc|ENSG00000164530|Q6UXB8-2|PI16	REV__nc|ENSG00000164530|Q6UXB8-2|PI16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8135375976562	2	597.791109	1193.56767	-0.23458	-0.00014023	0.45121	0.00026973	0.21663	0.0001295	597.7914798042639	40.263	0.25183	40.263	40.123	40.375	0					12	8	2	0	0	0	0.31095	1	7356	7356		1.1933	0	1	24870	+		1850	9997	1260	1270	2495	2495					-0.02137569229944347
DSCPIGDQVYR	11	Unmodified	_DSCPIGDQVYR_					0	0	0			REV__ENST00000529267.2_1_14:70712472-70713909:-|nuORF	REV__ENST00000529267.2_1_14:70712472-70713909:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8034057617188	2	626.78497	1251.55539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.303	1	19.303	18.803	19.803	0								0	0	0	0.34125	1	1326	1326		0.30703	0	1		+		1851	9358	1261	1271	2496	2496					-0.06032928964646089
DSEYSKVRL	9	Unmodified	_DSEYSKVRL_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.78759765625	2	548.785296	1095.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.996	1	54.996	54.496	55.496	0								0	0	0	0.15116	1	11836	11836		25.399	4.9457	1				1852	4340	1262	1272	2497	2497					0.012082337467290927
DSFSALQVLLR	11	Unmodified	_DSFSALQVLLR_					0	0	0		ENST00000541916.5_1_13:49649476-49688811:+|nuORF	ENST00000541916.5_1_13:49649476-49688811:+|nuORF	ENST00000541916.5_1_13:49649476-49688811:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.85107421875	2	624.85097	1247.68739	0.17365	0.00010851	0.1879	0.00011741	0.36155	0.00022592	624.8510173565058	82.896	0.35616	82.896	82.723	83.079	0					31	11	4	0	0	0	0.036661	1	20332	20332		60.899	27.454	1	213190			1853	7065	1263	1273	2498	2498					0.07345044114595112
DSFSALQVLLR	11	Unmodified	_DSFSALQVLLR_					0	0	0		ENST00000541916.5_1_13:49649476-49688811:+|nuORF	ENST00000541916.5_1_13:49649476-49688811:+|nuORF	ENST00000541916.5_1_13:49649476-49688811:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8505859375	2	624.85097	1247.68739	0.22267	0.00013914	0.18073	0.00011293	0.4034	0.00025207	624.8510090782291	82.847	0.45891	82.869	82.705	83.164	0.021744					30	15	3	0	0	0	0.067171	2	20157	20157;20203		53.47	26.246	1	272880			1854	7065	1263	1273	2499;2500	2499					0.07345044114595112
DSGDVAALR	9	Unmodified	_DSGDVAALR_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2297668457031	2	452.230156	902.445759	0.074203	3.3557E-05	-0.49546	-0.00022406	-0.42126	-0.00019051	452.22983902553614	33.506	0.7062	33.506	33.2	33.906	0					50	25	3	0	0	0	0.0042703	2	5330	5330;5374		99.755	45.922	1	204780			1855	4299	1264	1274	2501;2502	2501					-0.009365665216705565
DSGDVAALR	9	Unmodified	_DSGDVAALR_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.2297668457031	2	452.230156	902.445759	-0.10179	-4.6031E-05	-0.16916	-7.6501E-05	-0.27095	-0.00012253	452.2299482025872	33.396	0.76385	33.47	33.117	33.881	0.074322					58	31	3	0	0	0	0.0081278	2	5179	5179;5222		72.968	38.566	1	140330			1856	4299	1264	1274	2503;2504	2503					-0.009365665216705565
DSIDLIHGAI	10	Unmodified	_DSIDLIHGAI_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2643432617188	2	527.282389	1052.55022	0.22098	0.00011652	-0.36977	-0.00019497	-0.14878	-7.8451E-05	527.2821506210249	50.97	0.67767	51.039	50.854	51.531	0.069878					57	26	3	0	0	0	0.42335	1	10593	10593		9.3831	1.473	1	349780	+		1857	9922	1265	1275	2505	2505					0.026051352350577872
DSIGSTVSSER	11	Unmodified	_DSIGSTVSSER_					0	0	0		nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1	nc|ENSG00000059728|Q05195-2|MXD1	nc|ENSG00000059728|Q05195-2|MXD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2726440429688	2	569.272749	1136.53095	-0.15931	-9.0692E-05	-0.78867	-0.00044897	-0.94798	-0.00053966	569.2723036948836	31.541	0.34108	31.541	31.412	31.753	0					29	14	3	0	0	0	0.3109	1	4762	4762		2.086	0.60411	1	52858			1858	636	1266	1276	2506	2506					-0.0318586584651257
DSIGSTVSSER	11	Unmodified	_DSIGSTVSSER_					0	0	0		nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1	nc|ENSG00000059728|Q05195-2|MXD1	nc|ENSG00000059728|Q05195-2|MXD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2719116210938	2	569.272749	1136.53095	-0.10232	-5.8249E-05	-1.0441	-0.00059437	-1.1464	-0.00065262	569.272031788857	31.463	0.33574	31.536	31.456	31.792	0.073782					33	16	3	0	0	0	0.40977	1	4638	4638		2.086	0.60411	1	39174			1859	636	1266	1276	2507	2507					-0.0318586584651257
DSILAEKTV	9	Unmodified	_DSILAEKTV_					0	0	0		nc|ENSG00000139364|Q14DG7-3|TMEM132B;nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B	nc|ENSG00000139364|Q14DG7-3|TMEM132B	nc|ENSG00000139364|Q14DG7-3|TMEM132B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2532653808594	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.38	1	65.449	64.949	65.949	0.068916								0	0	0	0.17567	1	14855	14855		21.747	0	1				1860	2968	1267	1277	2508	2508					0.04014330486484141
DSITVPVAR	9	Unmodified	_DSITVPVAR_					0	0	0		nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1	nc|ENSG00000132842|O00203-3|AP3B1	nc|ENSG00000132842|O00203-3|AP3B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2713623046875	2	479.271824	956.529095	-0.42589	-0.00020412	-0.65157	-0.00031228	-1.0775	-0.0005164	479.27132954227716	44.437	0.33683	44.437	44.269	44.606	0					26	11	3	0	0	0	0.03472	1	8631	8631		47.749	0	1	133830			1861	2600	1268	1278	2509	2509					0.049091699261907706
DSITVPVAR	9	Unmodified	_DSITVPVAR_					0	0	0		nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1	nc|ENSG00000132842|O00203-3|AP3B1	nc|ENSG00000132842|O00203-3|AP3B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2718811035156	2	479.271824	956.529095	-0.25841	-0.00012385	-0.55586	-0.00026641	-0.81427	-0.00039025	479.27167899042325	44.339	0.3808	44.428	44.216	44.597	0.088924					31	12	3	0	0	0	0.098463	1	8472	8472		32.786	0	1	81992			1862	2600	1268	1278	2510	2510					0.049091699261907706
DSIVIQQGR	9	Unmodified	_DSIVIQQGR_					0	0	0		nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370|SMARCA1	nc|ENSG00000102038|P28370|SMARCA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2798767089844	2	508.28018	1014.54581	0.04488	2.2812E-05	-0.47665	-0.00024227	-0.43177	-0.00021946	508.27998372685727	35.219	0.47674	35.219	35.002	35.479	0					34	16	3	0	0	0	0.083124	1	5854	5854		36.127	20.28	1	65256			1863	1290	1269	1279	2511	2511					0.03911670812158263
DSIVIQQGR	9	Unmodified	_DSIVIQQGR_					0	0	0		nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370|SMARCA1	nc|ENSG00000102038|P28370|SMARCA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2801818847656	2	508.28018	1014.54581	0.091711	4.6615E-05	-0.38675	-0.00019658	-0.29504	-0.00014996	508.2801209280596	35.137	0.45527	35.216	35.058	35.513	0.078827					29	18	2	0	0	0	0.091044	1	5719	5719		34.402	18.555	1	59437			1864	1290	1269	1279	2512	2512					0.03911670812158263
DSIVRGNTI	9	Unmodified	_DSIVRGNTI_					0	0	0		ENST00000496669.1_1_3:87100344-87100812:-|nuORF;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7669372558594	2	487.766906	973.519259	-0.23518	-0.00011471	0.30941	0.00015092	0.074235	3.6209E-05	487.7669416126753	30.679	0.65135	30.755	30.563	31.214	0.075403					81	36	3	0	0	0	0.12214	1	4364	4364		27.629	0	1	173210			1865	2384	1270	1280	2513	2513					0.0314398192082308
DSKELGKCMV	10	Unmodified	_DSKELGKCMV_					0	0	0			REV__NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	REV__NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2700805664062	2	555.270109	1108.52567	0.13692	7.6028E-05	0.31175	0.00017311	0.44867	0.00024913	555.2702140594994	28.99	0.64825	29.068	28.878	29.527	0.078289					123	43	4	0	0	0	0.46827	1	3968	3968		1.3295	0.13619	1	281460	+		1866	9496	1271	1281	2514	2514					-0.024255842343563927
DSKTKPVY	8	Unmodified	_DSKTKPVY_					0	0	0		tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.253173828125	2	469.2531	936.491647	-0.0040234	-1.888E-06	0.61152	0.00028696	0.60749	0.00028507	469.2534453657542	36.663	0.35937	36.745	36.608	36.967	0.081715					21	14	2	0	0	0	0.53345	1	6170	6170		5.7604	1.4312	1	52677			1867	13566	1272	1282	2515	2515					0.020860786605680914
DSKTKPVY	8	Unmodified	_DSKTKPVY_					0	0	0		tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	469.2531	936.491647	0.09877	4.6348E-05	0.83172	0.00039029	0.93049	0.00043664	469.25350842668837	36.782	0.51811	36.782	36.611	37.129	0	0.018592	0.00014238	NaN	5.7604	28	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43719			1868	13566	1272	1282							0.020860786605680914
DSLFCFLLL	9	Unmodified	_DSLFCFLLL_					0	0	0		SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.783447265625	2	535.783179	1069.5518	0.55415	0.0002969	-0.027251	-1.4601E-05	0.5269	0.0002823	535.7830908324864	99.438	0.69878	99.438	99.044	99.743	0					125	41	4	0	0	0	0.12809	1	25414	25414		26.884	5.137	1	2000200			1869	13356	1273	1283	2516	2516					0.019810529994629178
DSLLVVLDM	9	Unmodified	_DSLLVVLDM_					0	0	0		ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.786865234375	2	502.770268	1003.52598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.107	1	77.107	76.607	77.607	0								0	0	0	0.17567	1	18580	18580		21.747	1.293	1				1870	4610	1274	1284	2517	2517					0.024361587571661403
DSNEDYFT	8	Unmodified	_DSNEDYFT_					0	0	0			REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.6878967285156	2	495.687987	989.361421	0.57735	0.00028619	-0.65459	-0.00032447	-0.077234	-3.8284E-05	495.6875940450526	81.491	0.70866	81.512	81.283	81.992	0.021866					35	25	2	0	0	0	0.54097	1	19786	19786		0.69038	0.69038	1	244570	+		1871	10049	1275	1285	2518	2518					-0.1336856212908515
DSNLKIESME	10	Unmodified	_DSNLKIESME_					0	0	0			REV__nc|ENSG00000069869|P46934-3|NEDD4	REV__nc|ENSG00000069869|P46934-3|NEDD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2740478515625	2	583.273903	1164.53325	0.47966	0.00027977	0.51964	0.00030309	0.9993	0.00058287	583.274029518042	61.578	1.3866	61.578	61.218	62.605	0					173	63	3	0	0	0	0.23357	2	13795	13795;13973		29.841	0	1	6697000	+		1872	12753	1276	1286	2519;2520	2519					-0.04243153433071711
DSNLKIESME	10	Unmodified	_DSNLKIESME_					0	0	0			REV__nc|ENSG00000069869|P46934-3|NEDD4	REV__nc|ENSG00000069869|P46934-3|NEDD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2742309570312	2	583.273903	1164.53325	0.57245	0.0003339	0.31877	0.00018593	0.89122	0.00051983	583.2738880844485	61.494	2.0836	61.568	60.747	62.83	0.073421					223	89	4	0	0	0	0.32016	1	13908	13908		20.415	0	1	5209600	+		1873	12753	1276	1286	2521	2521					-0.04243153433071711
DSNWSWFQL	9	Unmodified	_DSNWSWFQL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.282958984375	2	591.764363	1181.51417	0.39771	0.00023535	-3.0392	-0.0017985	-2.6415	-0.0015632	591.7624992924073	61.337	0.30792	61.337	61.11	61.418	0					16	10	2	0	0	0	0.24791	1	13736	13736		6.2058	0	1	109550			1874	5650	1277	1287	2522	2522					-0.06932321941826558
DSPIMETHPL	10	Unmodified	_DSPIMETHPL_					0	0	0		ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000099715|Q9BZA8|PCDH11Y	ENSG00000099715|ENST00000698851|PCDH11Y	ENSG00000099715|ENST00000698851|PCDH11Y	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2772216796875	2	570.273706	1138.53286	0.26923	0.00015353	-2.4705	-0.0014089	-2.2013	-0.0012553	570.2750137327746	52.47	0.8402	52.538	52.175	53.015	0.067173					76	34	3	0	0	0	0.43972	1	10957	10957		6.7232	0.51738	1	215930			1875	1130	1278	1288	2523	2523					-0.030865283622688366
DSPSPAVTSL	10	Unmodified	_DSPSPAVTSL_					0	0	0			REV__NCAN|p.W1092Cfs*32|1|0.39|ENSG00000130287|chr19:19238277-19238277|G/-|frameshift_variant	REV__NCAN|p.W1092Cfs*32|1|0.39|ENSG00000130287|chr19:19238277-19238277|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2458190917969	2	487.245472	972.476391	-0.012709	-6.1922E-06	-0.29537	-0.00014392	-0.30808	-0.00015011	487.24520757701305	49.459	0.41053	49.536	49.359	49.77	0.076607					20	14	2	0	0	0	0.12944	1	10030	10030		41.84	3.6641	1	67801	+		1876	9052	1279	1289	2524	2524					-0.01094832927265088
DSQPKPDLEN	10	Unmodified	_DSQPKPDLEN_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.76904296875	2	571.769842	1141.52513	0.47778	0.00027318	-1.6842	-0.00096296	-1.2064	-0.00068978	571.7687671172782	99.908	0.51151	99.951	99.845	100.36	0.042839					37	20	3	0	0	0	0.38376	1	25422	25422		13.615	2.7909	1	170620			1877	4581	1280	1290	2525	2525					-0.039969643581798664
DSQPKPDLEN	10	Unmodified	_DSQPKPDLEN_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	571.769842	1141.52513	0.41784	0.00023891	-1.3162	-0.00075256	-0.89834	-0.00051364	571.7690539969004	99.848	0.36197	99.848	99.817	100.18	0	-0.05157	0.00014701	NaN	13.615	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161770			1878	4581	1280	1290							-0.039969643581798664
DSRVFFFLL	9	Unmodified	_DSRVFFFLL_					0	0	0		ENST00000415922.6_1_6:26635247-26635457:-|nuORF	ENST00000415922.6_1_6:26635247-26635457:-|nuORF	ENST00000415922.6_1_6:26635247-26635457:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3131103515625	2	572.313492	1142.61243	0.26319	0.00015063	0.34082	0.00019506	0.60401	0.00034568	572.3135728142885	83.352	1.0803	83.374	83.137	84.217	0.021744					77	38	4	0	0	0	0.092418	1	20398	20398		34.102	5.6156	1	992040			1879	6419	1281	1291	2526	2526					0.0468290637404607
DSSFTIDLFF	10	Unmodified	_DSSFTIDLFF_					0	0	0			REV__ENSG00000170035|ENST00000410062|UBE2E3	REV__ENSG00000170035|ENST00000410062|UBE2E3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.8446655273438	2	596.282054	1190.54956	0.2476	0.00014764	-0.39136	-0.00023336	-0.14375	-8.5717E-05	596.2816294776204	101.95	0.28974	101.99	101.88	102.17	0.042656					40	25	2	0	0	0	0.31616	1	26011	26011		10.074	2.1638	1	51459	+		1880	10197	1282	1292	2527	2527					-0.03809704204672926
DSSFTIDLFF	10	Unmodified	_DSSFTIDLFF_					0	0	0			REV__ENSG00000170035|ENST00000410062|UBE2E3	REV__ENSG00000170035|ENST00000410062|UBE2E3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	596.282054	1190.54956	0.19477	0.00011614	0.83253	0.00049642	1.0273	0.00061256	596.7836220655907	102.18	0.048523	102.18	102.16	102.2	0	0.092777	0.0013975	NaN	10.074	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45517	+		1881	10197	1282	1292							-0.03809704204672926
DSSGLTVHR	9	Unmodified	_DSSGLTVHR_					0	0	0		ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2487487792969	2	486.24888	970.483208	-0.46276	-0.00022502	0.49292	0.00023968	0.030161	1.4666E-05	486.24886077176114	23.168	0.46895	23.168	23.055	23.524	0					80	45	2	0	0	0	0.26104	2	2362	2327;2362		11.495	5.7629	1	45089			1882	5054	1283	1293	2528;2529	2529					-0.003214752560438683
DSSGLTVHR	9	Unmodified	_DSSGLTVHR_					0	0	0		ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2485656738281	2	486.24888	970.483208	-0.19137	-9.3051E-05	-0.00088028	-4.2804E-07	-0.19225	-9.3479E-05	486.24862433889126	22.976	0.38749	23.078	22.935	23.322	0.10178					58	37	2	0	0	0	0.30757	1	2168	2168		5.7319	1.4026	1	34397			1883	5054	1283	1293	2530	2530					-0.003214752560438683
DSSNNVILR	9	Unmodified	_DSSNNVILR_					0	0	0		ENSG00000183682|ENST00000331593|BMP8A;ENSG00000116985|ENST00000372827|BMP8B	ENSG00000183682|ENST00000331593|BMP8A	ENSG00000183682|ENST00000331593|BMP8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2694091796875	2	509.269813	1016.52507	0.18931	9.6411E-05	-0.1771	-9.019E-05	0.012216	6.221E-06	509.2696407967672	36.833	0.37237	36.833	36.611	36.983	0					35	13	3	0	0	0	0.0050339	2	6319	6319;6361		82.529	27.756	1	203970			1884	1982	1284	1294	2531;2532	2531					0.01747080432483017
DSSNNVILR	9	Unmodified	_DSSNNVILR_					0	0	0		ENSG00000183682|ENST00000331593|BMP8A;ENSG00000116985|ENST00000372827|BMP8B	ENSG00000183682|ENST00000331593|BMP8A	ENSG00000183682|ENST00000331593|BMP8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2697448730469	2	509.269813	1016.52507	0.21853	0.00011129	0.048967	2.4938E-05	0.2675	0.00013623	509.2696671216043	36.715	0.38433	36.796	36.583	36.967	0.081711					36	15	3	0	0	0	0.005983	2	6200	6161;6200		79.596	33.575	1	158850			1885	1982	1284	1294	2533;2534	2534					0.01747080432483017
DSSSILADR	9	Unmodified	_DSSSILADR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2397766113281	2	482.240721	962.466889	-0.010037	-4.8403E-06	-0.576	-0.00027777	-0.58604	-0.00028261	482.24042649319887	37.212	0.40417	37.212	37.038	37.442	0					25	15	2	0	0	0	0.19661	1	6439	6439		27.223	11.074	1	73886			1886	1224;1250	1285	1295	2535	2535					-0.01584601212812231
DSSSILADR	9	Unmodified	_DSSSILADR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.24072265625	2	482.240721	962.466889	0.0055208	2.6624E-06	-0.51113	-0.00024649	-0.50561	-0.00024382	482.2405510325956	37.112	0.48869	37.197	37.016	37.505	0.084476					25	17	2	0	0	0	0.20162	1	6289	6289		18.373	9.7798	1	56943			1887	1224;1250	1285	1295	2536	2536					-0.01584601212812231
DSSSYSVPSEG	11	Unmodified	_DSSSYSVPSEG_					0	0	0		ENSG00000136141|ENST00000389797|LRCH1	ENSG00000136141|ENST00000389797|LRCH1	ENSG00000136141|ENST00000389797|LRCH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7318115234375	2	557.730383	1113.44621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.245	1	24.245	23.745	24.745	0								0	0	0	0.33873	1	2630	2630		1.1933	0.59184	1				1888	2770	1286	1296	2537	2537					-0.10597236383136988
DSTFSILQTW	10	Unmodified	_DSTFSILQTW_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8164672851562	2	599.292953	1196.57135	0.57743	0.00034605	0.14744	8.836E-05	0.72487	0.00043441	599.2925839943041	54.952	0.36948	54.952	54.768	55.138	0					27	13	3	0	0	0	0.30478	1	11845	11845		21.59	5.8515	1	190310			1889	13348	1287	1297	2538	2538					-0.019068994560939245
DSTFSILQTW	10	Unmodified	_DSTFSILQTW_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.816650390625	2	599.292953	1196.57135	0.55398	0.000332	0.074037	4.437E-05	0.62802	0.00037637	599.2927270376682	54.909	0.38926	54.974	54.826	55.216	0.065128					25	15	2	0	0	0	0.31575	1	11692	11692		8.9762	3.5735	1	132130			1890	13348	1287	1297	2539	2539					-0.019068994560939245
DSVLPLLTV	9	Unmodified	_DSVLPLLTV_					0	0	0			REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2700500488281	2	478.786776	955.558998	-0.11126	-5.3268E-05	-3.5473	-0.0016984	-3.6586	-0.0017517	478.7850084106973	89.549	0.30062	89.549	89.416	89.716	0					14	10	2	0	0	0	0.26684	1	22367	22367		10.824	0	1	78328	+		1891	12009	1288	1298	2540	2540					0.07944108871527078
DSVLPLLTV	9	Unmodified	_DSVLPLLTV_					0	0	0			REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7687072753906	2	478.786776	955.558998	-0.079689	-3.8154E-05	-2.4104	-0.0011541	-2.4901	-0.0011922	478.78547338142016	89.464	0.37044	89.496	89.33	89.701	0.032257					18	13	2	0	0	0	0.26684	1	22194	22194		10.824	0	1	50893	+		1892	12009	1288	1298	2541	2541					0.07944108871527078
DSVLPLLTV	9	Unmodified	_DSVLPLLTV_					0	0	0			REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	478.786776	955.558998	-0.11126	-5.3268E-05	-3.5473	-0.0016984	-3.6586	-0.0017517	478.7850084106973	89.549	0.30062	89.549	89.416	89.716	0	0.026648	-0.00053703	NaN	10.824	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78328	+		1893	12009	1288	1298							0.07944108871527078
DSVVIVDER	9	Unmodified	_DSVVIVDER_					0	0	0		ENSG00000063978|ENST00000314289|RNF4	ENSG00000063978|ENST00000314289|RNF4	ENSG00000063978|ENST00000314289|RNF4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7623291015625	2	516.272021	1030.52949	-0.29607	-0.00015285	2.7548	0.0014222	2.4587	0.0012694	516.7753378742325	42.041	0.11308	42.131	42.072	42.186	0.089764					6	4	2	0	0	0	0.24533	1	7789	7789		12.241	1.4167	1	64268			1894	662	1289	1299	2542	2542					0.015445448553691676
DSYRYPIRR	9	Unmodified	_DSYRYPIRR_					0	0	0			REV__nc|ENSG00000117650|P51955-3|NEK2	REV__nc|ENSG00000117650|P51955-3|NEK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.05126953125	2	613.325454	1224.63635	0.078234	4.7983E-05	-3.2902	-0.002018	-3.212	-0.00197	613.3235045983416	52.214	0.15557	52.281	52.203	52.358	0.067169					9	6	2	0	0	0	0.259	1	10837	10837		1.6526	0.32309	1	29195	+		1895	8832	1290	1300	2543	2543					0.033021398603978014
DTAAQITQR	9	Unmodified	_DTAAQITQR_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2623596191406	2	502.261988	1002.50942	-0.18217	-9.1498E-05	0.095967	4.8201E-05	-0.086204	-4.3297E-05	502.26246576117194	27.531	3.7109	27.531	27.217	30.928	0					599	213	6	0	0	0	3.5371E-32	5	3559	3524;3559;3595;3633;3671		243.33	132.65	1	48018000			1896	5476	1291	1301	2544;2545;2546;2547;2548	2545					0.008267939154279702
DTAAQITQR	9	Unmodified	_DTAAQITQR_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2473449707031	2	502.261988	1002.50942	-0.14058	-7.0606E-05	-0.039729	-1.9954E-05	-0.1803	-9.056E-05	502.26190023855685	31.557	0.79472	31.557	31.365	32.16	0					48	33	2	0	0	0	0.25259	1	4714	4714		7.609	1.8771	1	24589			1897	5476	1291	1301	2549	2549					0.008267939154279702
DTAAQITQR	9	Unmodified	_DTAAQITQR_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2623596191406	2	502.261988	1002.50942	-0.13394	-6.7271E-05	0.084888	4.2636E-05	-0.049047	-2.4635E-05	502.2624669977315	27.406	2.1701	27.492	27.248	29.418	0.0867					469	145	5	0	0	0	2.4612E-24	5	3399	3360;3399;3434;3477;3514		228.37	126.8	1	40461000			1898	5476	1291	1301	2550;2551;2552;2553;2554	2551					0.008267939154279702
DTAAQNPLR	9	Unmodified	_DTAAQNPLR_					0	0	0			REV__ENST00000571637.1_1_17:3808599-3819210:-|nuORF	REV__ENST00000571637.1_1_17:3808599-3819210:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2577819824219	2	493.256705	984.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.547	1	27.547	27.047	28.047	0								0	0	0	0.065902	1	3579	3579		43.858	3.6191	1		+		1899	12523	1292	1302	2555	2555					0.005988112609884411
DTANDGFVRL	10	Unmodified	_DTANDGFVRL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH1|p.E174Nfs*7|1|0.26|ENSG00000169045|chr5:179619281-179619285|CTTTC/-|frameshift_variant;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.789306640625	2	554.275095	1106.53564	0.55227	0.00030611	-0.42178	-0.00023378	0.13049	7.2326E-05	554.2749189590119	55.792	0.56589	55.792	55.497	56.063	0					36	19	3	0	0	0	0.11403	1	12101	12101		68.76	39.678	1	192480			1900	4322;2354	1293	1303	2556	2556					-0.013369369130941777
DTANDGFVRL	10	Unmodified	_DTANDGFVRL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH1|p.E174Nfs*7|1|0.26|ENSG00000169045|chr5:179619281-179619285|CTTTC/-|frameshift_variant;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7884521484375	2	554.275095	1106.53564	0.53904	0.00029878	-0.58618	-0.0003249	-0.047138	-2.6127E-05	554.2748457025867	55.771	0.41939	55.836	55.646	56.066	0.065128					24	14	2	0	0	0	0.0092335	2	11940	11940;11971		77.049	47.967	1	171610			1901	4322;2354	1293	1303	2557;2558	2557					-0.013369369130941777
DTDNEEEIR	9	Unmodified	_DTDNEEEIR_					0	0	0		ENSG00000178363|ENST00000315238|CALML3	ENSG00000178363|ENST00000315238|CALML3	ENSG00000178363|ENST00000315238|CALML3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2894897460938	2	560.741282	1119.46801	0.074855	4.1975E-05	-1.7692	-0.00099204	-1.6943	-0.00095007	560.7401424688483	58.38	0.42532	58.38	58.256	58.682	0					20	15	2	0	0	0	0.2229	1	12888	12888		19.257	2.1441	1	76451			1902	4741	1294	1304	2559	2559					-0.08694431634557986
DTDYKRWT	8	Unmodified	_DTDYKRWT_					0	0	0			REV__CALB1|p.M104K|1|0.13|ENSG00000104327|chr8:90069158-90069158|A/T|missense_variant	REV__CALB1|p.M104K|1|0.13|ENSG00000104327|chr8:90069158-90069158|A/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7579956054688	2	542.756538	1083.49852	0.41894	0.00022738	1.5644	0.00084911	1.9834	0.0010765	542.7574504018457	38.248	0.61032	38.335	37.904	38.514	0.08688					29	22	2	0	0	0	0.53858	1	6576	6576		2.3027	0	1	31549	+		1903	7748	1295	1305	2560	2560					-0.0398860845884883
DTEKIPPLF	9	Unmodified	_DTEKIPPLF_					0	0	0			REV__ENST00000383168.8_2_18:24436090-24436135:-|nuORF	REV__ENST00000383168.8_2_18:24436090-24436135:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.8150024414062	2	530.289682	1058.56481	0.39701	0.00021053	0.50351	0.000267	0.90052	0.00047754	530.7917721404316	74.526	0.43302	74.526	74.31	74.743	0					24	15	3	0	0	0	0.25281	1	17754	17754		6.7232	1.4925	1	63541	+		1904	11679	1296	1306	2561	2561					0.037872073831977104
DTEKPKKTDV	10	Unmodified	_DTEKPKKTDV_					0	0	0		ENST00000466133.1_1_3:159820071-159820575:+|nuORF	ENST00000466133.1_1_3:159820071-159820575:+|nuORF	ENST00000466133.1_1_3:159820071-159820575:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2406005859375	2	580.81151	1159.60847	0.22594	0.00013123	-0.14268	-8.2871E-05	0.083263	4.836E-05	580.8115328431347	35.534	0.31599	35.534	35.389	35.705	0					14	10	2	0	0	0	0.31844	1	5947	5947		1.1933	0	1	37828			1905	6639	1297	1307	2562	2562					0.03504772089650032
DTFHKNTGIV	10	Unmodified	_DTFHKNTGIV_					0	0	0			REV__tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1	REV__tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7747192382812	2	566.293288	1130.57202	0.14249	8.069E-05	-0.029801	-1.6876E-05	0.11269	6.3813E-05	566.2933861021253	59.068	0.54918	59.139	58.995	59.544	0.070477					35	21	2	0	0	0	0.31643	1	13010	13010		9.3831	1.2276	1	211470	+		1906	13100	1298	1308	2563	2563					0.011959399836086959
DTFRVFFKGS	10	Unmodified	_DTFRVFFKGS_					0	0	0		CON__Q3T052	CON__Q3T052	CON__Q3T052	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778381347656	3	401.876746	1202.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.954	1	24.054	23.554	24.554	0.099739								0	0	0	0.33892	1	2429	2429		0.62683	0	1			+	1907	235	1299	1309	2564	2564					0.01520816880338316
DTGNIGQER	9	Unmodified	_DTGNIGQER_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2357482910156	2	495.23597	988.457387	-0.12073	-5.9791E-05	-0.023289	-1.1533E-05	-0.14402	-7.1325E-05	495.2359279177414	21.954	0.42119	21.954	21.825	22.246	0					67	40	2	0	0	0	0.29334	2	2013	1979;2013		7.609	2.3121	1	53118			1908	1897	1300	1310	2565;2566	2566					-0.037303694983279456
DTGWMYRLI	9	Unmodified	_DTGWMYRLI_					0	0	0			REV__ENSG00000110344|ENST00000252108|UBE4A	REV__ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7872314453125	2	577.786784	1153.55902	0.50711	0.000293	0.1909	0.0001103	0.698	0.0004033	577.7868326424441	60.133	1.1033	60.133	59.867	60.971	0					75	39	3	0	0	0	0.30397	1	13576	13576		6.2058	1.8765	1	518390	+		1909	8665	1301	1311	2567	2567					-0.011622144001421475
DTIEIITDR	9	Unmodified	_DTIEIITDR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.28515625	2	538.285128	1074.5557	0.24585	0.00013234	-0.20156	-0.0001085	0.044287	2.3839E-05	538.2849804368731	52.822	0.98903	52.822	52.555	53.544	0					101	38	5	0	0	0	1.8205E-09	1	11183	11183		173.69	77.575	1	3793600			1910	2187	1302	1312	2568	2568					0.021408140268476927
DTIEIITDR	9	Unmodified	_DTIEIITDR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.28515625	2	538.285128	1074.5557	0.52549	0.00028286	-0.36435	-0.00019612	0.16114	8.6739E-05	538.2848677729792	52.782	0.9533	52.849	52.548	53.502	0.067173					108	42	4	0	0	0	3.2925E-10	1	11039	11039		176.43	83.774	1	3057500			1911	2187	1302	1312	2569	2569					0.021408140268476927
DTIENVKAK	9	Unmodified	_DTIENVKAK_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2820739746094	2	509.282389	1016.55022	-0.30269	-0.00015416	-0.049338	-2.5127E-05	-0.35203	-0.00017928	509.28225908745935	22.093	0.82532	22.093	21.927	22.753	0					173	69	4	0	0	0	0.0068798	3	2039	2007;2039;2073		76.825	31.125	1	290470			1912	3191	1303	1313	2570;2571;2572	2571					0.04261135235049096
DTIENVKAK	9	Unmodified	_DTIENVKAK_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2822570800781	2	509.282389	1016.55022	0.032266	1.6432E-05	-0.27709	-0.00014112	-0.24482	-0.00012468	509.28217806321015	21.92	0.62783	22.021	21.846	22.474	0.10178					159	58	4	0	0	0	0.0040167	3	1890	1858;1890;1923		103.42	40.847	1	260860			1913	3191	1303	1313	2573;2574;2575	2574					0.04261135235049096
DTITETDLR	9	Unmodified	_DTITETDLR_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7423706054688	2	532.266936	1062.51932	-0.014666	-7.8063E-06	-0.2945	-0.00015675	-0.30916	-0.00016456	532.2667133581787	39.763	0.55385	39.763	39.518	40.071	0					43	18	3	0	0	0	0.038134	1	7231	7231		67.838	38.757	1	173650			1914	980	1304	1314	2576	2576					-0.009440628698484943
DTITETDLR	9	Unmodified	_DTITETDLR_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7423095703125	2	532.266936	1062.51932	0.19817	0.00010548	-0.32028	-0.00017048	-0.12211	-6.4995E-05	532.2667159844278	39.709	0.53186	39.798	39.557	40.089	0.088562					41	19	3	0	0	0	0.13369	1	7065	7065		40.239	12.61	1	123510			1915	980	1304	1314	2577	2577					-0.009440628698484943
DTKIILETK	9	Unmodified	_DTKIILETK_					0	0	0		ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.756591796875	2	530.816064	1059.61758	0.16149	8.5719E-05	-0.19695	-0.00010455	-0.035469	-1.8828E-05	530.8158308527089	35.785	0.40443	35.785	35.617	36.022	0					34	15	3	0	0	0	0.24718	1	6022	6022		12.175	5.073	1	73399			1916	3249	1305	1315	2578	2578					0.09015165445998718
DTKIILETK	9	Unmodified	_DTKIILETK_					0	0	0		ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7564086914062	2	530.816064	1059.61758	0.24529	0.0001302	-0.17198	-9.129E-05	0.073307	3.8913E-05	530.8157600918486	35.694	0.45055	35.773	35.596	36.046	0.078827					27	16	3	0	0	0	0.24819	1	5893	5893		10.8	4.0763	1	59005			1917	3249	1305	1315	2579	2579					0.09015165445998718
DTLEGSMAQL	10	Unmodified	_DTLEGSMAQL_					0	0	0		nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7483520507812	2	532.750064	1063.48558	0.21243	0.00011317	-4.4786	-0.002386	-4.2662	-0.0022728	532.7470692012328	51.072	0.74178	51.072	50.707	51.448	0					54	24	3	0	0	0	0.36848	1	10694	10694		15.248	1.3424	1	123760			1918	755	1306	1316	2580	2580					-0.0436280763326522
DTLPKQQEE	9	Unmodified	_DTLPKQQEE_					0	0	0			REV__nc|ENSG00000123908|Q9UKV8-2|AGO2	REV__nc|ENSG00000123908|Q9UKV8-2|AGO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.795166015625	2	544.266936	1086.51932	0.041161	2.2403E-05	-2.1446	-0.0011672	-2.1034	-0.0011448	544.7672792378884	39.904	0.3983	39.993	39.816	40.214	0.088566					23	15	2	0	0	0	0.25281	1	7109	7109		6.7232	0.51738	1	46115	+		1919	8939	1307	1317	2581	2581					-0.020480628698578585
DTNLKLTL	8	Unmodified	_DTNLKLTL_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.26837158203125	2	459.26875	916.522947	-0.082375	-3.7832E-05	-0.06939	-3.1869E-05	-0.15177	-6.9701E-05	459.26880316287185	45.171	0.26037	45.259	45.061	45.321	0.087543					16	9	2	0	0	0	0.53279	1	8723	8723		6.2058	0	1	27579			1920	5217	1308	1318	2582	2582					0.061346516946514384
DTNLKLTL	8	Unmodified	_DTNLKLTL_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	459.26875	916.522947	-0.10635	-4.8842E-05	0.15295	7.0243E-05	0.0466	2.1402E-05	459.2688447639378	45.187	0.28332	45.187	45.075	45.358	0	-0.036121	0.00010866	NaN	6.2058	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21718			1921	5217	1308	1318							0.061346516946514384
DTPMCRIL	8	Unmodified	_DTPMCRIL_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;RICTOR|p.R1613H|1|0.24|ENSG00000164327|chr5:38944521-38944521|C/T|missense_variant	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7361145019531	2	474.735706	947.456858	0.23104	0.00010968	0.72273	0.00034311	0.95377	0.00045279	474.73607525449154	55.219	0.34227	55.284	55.032	55.374	0.065128					20	13	2	0	0	0	0.53118	1	11771	11771		7.2892	0.93513	1	34317			1922	4000	1309	1319	2583	2583					-0.018972037433854894
DTQQHVYSIF	10	Unmodified	_DTQQHVYSIF_					0	0	0			REV__tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	REV__tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.2958374023438	2	619.296027	1236.5775	-0.20167	-0.0001249	-1.8761	-0.0011619	-2.0778	-0.0012868	619.2949245816343	86.174	0.27954	86.174	86.104	86.383	0					17	10	3	0	0	0	0.46827	1	21344	21344		1.3295	0.72803	1	108170	+		1923	13223	1310	1320	2584	2584					-0.0313238122457733
DTQQIYVL	8	Unmodified	_DTQQIYVL_					0	0	0			REV__ENSG00000130706|ENST00000253003|ADRM1	REV__ENSG00000130706|ENST00000253003|ADRM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.79248046875	2	490.258382	978.502212	0.4215	0.00020665	0.10201	5.0011E-05	0.52351	0.00025666	490.2583585588997	68.108	0.48755	68.172	68.045	68.532	0.063507					29	18	2	0	0	0	0.35759	1	15718	15718		10.824	0	1	245550	+		1924	9065	1311	1321	2585	2585					0.012100613150096251
DTRETETVF	9	Unmodified	_DTRETETVF_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C;VCL-SEC24C|1|fusion	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.259765625	2	549.259111	1096.50367	0.0014444	7.9333E-07	0.235	0.00012908	0.23644	0.00012987	549.2594084034057	29.979	0.3383	30.054	29.905	30.243	0.075403					42	20	3	0	0	0	0.33849	1	4156	4156		1.6526	0.17072	1	32224			1925	4683	1312	1322	2586	2586					-0.04072349386888163
DTRFILISL	9	Unmodified	_DTRFILISL_					0	0	0		ENST00000556777.1_1_14:22932002-22932101:-|nuORF	ENST00000556777.1_1_14:22932002-22932101:-|nuORF	ENST00000556777.1_1_14:22932002-22932101:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2788696289062	2	539.318774	1076.623	0.66682	0.00035963	0.46616	0.00025141	1.133	0.00061104	539.3190452682023	67.054	0.79795	67.054	66.871	67.669	0					55	29	3	0	0	0	0.25281	1	15692	15692		6.7232	0	1	373140			1926	7131	1313	1323	2587	2587					0.08774889028495636
DTRFILISL	9	Unmodified	_DTRFILISL_					0	0	0		ENST00000556777.1_1_14:22932002-22932101:-|nuORF	ENST00000556777.1_1_14:22932002-22932101:-|nuORF	ENST00000556777.1_1_14:22932002-22932101:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	539.318774	1076.623	0.87536	0.0004721	0.27331	0.0001474	1.1487	0.0006195	539.3189820756979	67.062	0.76627	67.127	66.9	67.666	0.065071	0.036532	-0.00011389	NaN	6.7232	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354580			1927	7131	1313	1323							0.08774889028495636
DTSESVALRL	10	Unmodified	_DTSESVALRL_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7656860351562	2	545.790578	1089.5666	0.42055	0.00022953	-0.23767	-0.00012972	0.18288	9.9814E-05	545.7904403528862	55.828	0.31675	55.828	55.662	55.979	0					19	10	2	0	0	0	0.30147	1	12092	12092		17.443	0	1	75856			1928	3088	1314	1324	2588	2588					0.0254021640114388
DTSGGTTALR	10	Unmodified	_DTSGGTTALR_					0	0	0		ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7459716796875	2	489.74617	977.477788	-0.28607	-0.0001401	0.15185	7.437E-05	-0.13422	-6.5734E-05	489.7461601481573	24.417	0.51833	24.417	24.252	24.771	0					109	41	3	0	0	0	5.0202E-05	1	2683	2683		110.79	61.238	1	181000			1929	4248	1315	1325	2589	2589					-0.011851988385274126
DTSGGTTALR	10	Unmodified	_DTSGGTTALR_					0	0	0		ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7460632324219	2	489.74617	977.477788	-0.095775	-4.6905E-05	0.045502	2.2284E-05	-0.050273	-2.4621E-05	489.7461123419279	24.202	0.51619	24.301	24.135	24.651	0.099739					127	49	3	0	0	0	0.086038	2	2486	2486;2522		47.732	21.464	1	181000			1930	4248	1315	1325	2590;2591	2590					-0.011851988385274126
DTSPPTLSLTF	11	Unmodified	_DTSPPTLSLTF_					0	0	0			REV__ENST00000598397.1_1_19:49850519-49858643:-|nuORF	REV__ENST00000598397.1_1_19:49850519-49858643:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7996215820312	2	589.800611	1177.58667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.181	1	24.281	23.781	24.781	0.099739								0	0	0	0.33835	1	2489	2489		1.3295	0.72803	1		+		1931	8182	1316	1326	2592	2592					0.004979673410844043
DTSSEITTK	9	Unmodified	_DTSSEITTK_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2400817871094	2	491.240386	980.46622	-0.24516	-0.00012043	-0.17156	-8.4278E-05	-0.41672	-0.00020471	491.2402106472848	23.349	0.39172	23.349	23.205	23.597	0					72	38	3	0	0	0	0.32831	1	2394	2394		2.9952	0	1	37151			1932	5122	1317	1327	2593	2593					-0.024794406525302293
DTSSEITTK	9	Unmodified	_DTSSEITTK_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	491.240386	980.46622	-0.0085786	-4.2141E-06	-0.72736	-0.00035731	-0.73594	-0.00036152	491.23998431847843	23.143	0.30169	23.245	23.113	23.415	0.10178	-0.052131	-0.0003223	NaN	2.9952	44	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22042			1933	5122	1317	1327							-0.024794406525302293
DTTSTGLAQR	10	Unmodified	_DTTSTGLAQR_					0	0	0		nc|ENSG00000180822|Q5JS54-3|PSMG4;ENSG00000180822|ENST00000438998|PSMG4;nc|ENSG00000180822|Q5JS54-2|PSMG4	nc|ENSG00000180822|Q5JS54-3|PSMG4	nc|ENSG00000180822|Q5JS54-3|PSMG4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2647094726562	2	525.264727	1048.5149	-0.22177	-0.00011649	-0.19649	-0.00010321	-0.41826	-0.00021969	525.264616164027	25.72	0.36022	25.72	25.575	25.936	0					57	27	3	0	0	0	0.31773	1	3045	3045		4.897	0	1	39980			1934	4819	1318	1328	2594	2594					-0.0074152729278011975
DTTSTGLAQR	10	Unmodified	_DTTSTGLAQR_					0	0	0		nc|ENSG00000180822|Q5JS54-3|PSMG4;ENSG00000180822|ENST00000438998|PSMG4;nc|ENSG00000180822|Q5JS54-2|PSMG4	nc|ENSG00000180822|Q5JS54-3|PSMG4	nc|ENSG00000180822|Q5JS54-3|PSMG4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.264727	1048.5149	-0.17768	-9.3331E-05	-0.14739	-7.7418E-05	-0.32507	-0.00017075	525.2646830244826	25.546	0.30205	25.638	25.51	25.812	0.091507	-0.041393	3.6845E-05	NaN	4.897	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28855			1935	4819	1318	1328							-0.0074152729278011975
DTTSYLIGR	9	Unmodified	_DTTSYLIGR_					0	0	0		LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.267333984375	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.911	1	47.911	47.411	48.411	0								0	0	0	0.0052898	1	9681	9681		72.968	30.873	1				1936	2215	1319	1329	2595	2595					0.007645622009476938
DTTSYLIGR	9	Unmodified	_DTTSYLIGR_					0	0	0		LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2669067382812	2	513.266739	1024.51892	0.56536	0.00029018	-1.4458	-0.00074207	-0.88042	-0.00045189	513.2667969696065	47.822	0.56312	47.902	47.685	48.248	0.080029					44	20	3	0	0	0	0.017478	1	9521	9521		60.074	24.03	1	139770			1937	2215	1319	1329	2596	2596					0.007645622009476938
DTTVPHQLA	9	Unmodified	_DTTVPHQLA_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-4|GNE	REV__nc|ENSG00000159921|Q9Y223-4|GNE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.75079345703125	2	491.253631	980.49271	-0.050145	-2.4634E-05	-0.90666	-0.0004454	-0.95681	-0.00047003	491.25350062201125	33.04	0.93028	33.115	32.734	33.665	0.074326					88	38	3	0	0	0	0.3182	1	5020	5020		4.3292	0.38484	1	260890	+		1938	9837	1320	1330	2597	2597					0.001682930294578
DTVAQITQR	9	Unmodified	_DTVAQITQR_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2777709960938	2	516.277638	1030.54072	0.16973	8.7628E-05	0.099517	5.1378E-05	0.26925	0.00013901	516.2776223105042	35.453	0.84217	35.453	35.205	36.047	0					79	31	4	0	0	0	1.8365E-14	3	5907	5907;5953;5998		195.45	110.1	1	825250			1939	5489	1321	1331	2598;2599;2600	2598					0.026673669495039576
DTVAQITQR	9	Unmodified	_DTVAQITQR_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2777709960938	2	516.277638	1030.54072	0.17452	9.0102E-05	0.12447	6.4259E-05	0.29899	0.00015436	516.2776237413676	35.374	0.82027	35.452	35.226	36.046	0.078827					78	31	4	0	0	0	1.8728E-05	2	5802	5755;5802		140.63	79.031	1	694730			1940	5489	1321	1331	2601;2602	2602					0.026673669495039576
DTVKIQRR	8	Unmodified	_DTVKIQRR_					0	0	0			REV__ENST00000560518.1_1_15:52473228-52473384:+|nuORF	REV__ENST00000560518.1_1_15:52473228-52473384:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.30389404296875	2	508.30399	1014.59343	-0.14341	-7.2898E-05	0.7143	0.00036308	0.57089	0.00029019	508.30437007435495	28.796	0.37374	28.874	28.722	29.096	0.078289					62	25	3	0	0	0	0.53026	1	3820	3820		7.9102	0	1	72564	+		1941	12475	1322	1332	2603	2603					0.08671369803005291
DTVRLHFTY	9	Unmodified	_DTVRLHFTY_					0	0	0			REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7949829101562	2	576.29583	1150.57711	0.56323	0.00032459	0.34333	0.00019786	0.90656	0.00052245	576.2959844672631	97.583	0.20016	97.583	97.461	97.661	0					12	8	2	0	0	0	0.2446	1	24784	24784		11.64	2.2929	1	145600	+		1942	9271	1323	1333	2604	2604					0.00784243846260324
DTWYLKNTVW	10	Unmodified	_DTWYLKNTVW_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.5545959472656	3	442.555672	1324.64519	0.14084	6.2328E-05	-3.8921	-0.0017225	-3.7513	-0.0016602	442.8879044500846	51.989	0.28915	52.056	51.938	52.227	0.067173					13	9	2	0	0	0	0.46688	1	10812	10812		1.5923	0	1	53535	+		1943	9182	1324	1334	2605	2605					-0.0041493129378977756
DTWYLKNTVW	10	Unmodified	_DTWYLKNTVW_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	442.555672	1324.64519	0.31349	0.00013874	-3.3923	-0.0015013	-3.0788	-0.0013625	442.55424400007837	52.006	0.33527	52.006	51.91	52.246	0	-0.024888	0.00026811	NaN	1.5923	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88776	+		1944	9182	1324	1334							-0.0041493129378977756
DTWYLKNTVW	10	Unmodified	_DTWYLKNTVW_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	442.555672	1324.64519	0.14084	6.2328E-05	-3.8921	-0.0017225	-3.7513	-0.0016602	442.8879044500846	51.989	0.28915	52.056	51.938	52.227	0.067173	0.024888	-0.00039552	NaN	1.5923	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53535	+		1945	9182	1324	1334							-0.0041493129378977756
DTWYMWGN	8	Unmodified	_DTWYMWGN_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1;REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.29833984375	2	536.713285	1071.41202	0.40774	0.00021884	-3.2634	-0.0017515	-2.8557	-0.0015327	536.7114289201746	73.162	0.16314	73.215	73.152	73.315	0.052567					7	5	2	0	0	0	0.3576	1	17214	17214		2.3027	0.4585	1	67159	+		1946	10155;8932	1325	1335	2606	2606					-0.1208331128507325
DTYSWLLKER	10	Unmodified	_DTYSWLLKER_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5628356933594	3	437.562827	1309.66665	0.36287	0.00015878	-0.49337	-0.00021588	-0.1305	-5.7103E-05	437.56260835107247	56.91	0.58611	56.91	56.6	57.187	0					52	21	4	0	0	0	0.43806	1	12400	12400		7.0371	2.6309	1	209920			1947	3660	1326	1336	2607	2607					0.02420453734930561
DTYSWLLKER	10	Unmodified	_DTYSWLLKER_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5630187988281	3	437.562827	1309.66665	0.21097	9.2311E-05	-0.24989	-0.00010934	-0.038926	-1.7033E-05	437.5626956444719	56.802	0.47335	56.868	56.706	57.179	0.066452					28	16	2	0	0	0	0.43144	1	12254	12254		8.2864	4.9668	1	253470			1948	3660	1326	1336	2608	2608					0.02420453734930561
DULGMEEKNI	10	Unmodified	_DULGMEEKNI_					0	0	0		ENSG00000138018|ENST00000260585|SELENOI	ENSG00000138018|ENST00000260585|SELENOI	ENSG00000138018|ENST00000260585|SELENOI	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.2294311523438	2	600.229425	1198.4443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.91	1	27.91	27.41	28.41	0								0	0	0	0.34018	1	3683	3683		0	0	0				1949	2885	1327	1337	2609	2609					-0.14698812227675262
DVAALAEAR	9	Unmodified	_DVAALAEAR_					0	0	0			REV__ENSG00000091010|ENST00000646991|POU4F3	REV__ENSG00000091010|ENST00000646991|POU4F3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.7745056152344	2	458.248349	914.482145	0.33261	0.00015242	-0.35975	-0.00016485	-0.027137	-1.2435E-05	458.2481937196259	36.829	0.37401	36.829	36.636	37.01	0					20	13	2	0	0	0	0.25875	1	6281	6281		1.8442	1.0506	1	31006	+		1950	8315	1328	1338	2610	2610					0.02148310375048368
DVAALAEAR	9	Unmodified	_DVAALAEAR_					0	0	0			REV__ENSG00000091010|ENST00000646991|POU4F3	REV__ENSG00000091010|ENST00000646991|POU4F3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	458.248349	914.482145	0.132	6.049E-05	1.9885	0.00091121	2.1205	0.0009717	458.2482391139355	36.702	0.3245	36.783	36.662	36.987	0.081715	-0.022898	0.0019922	NaN	3.9444	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29632	+		1951	8315	1328	1338							0.02148310375048368
DVAEVDTVR	9	Unmodified	_DVAEVDTVR_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2564392089844	2	502.256371	1002.49819	0.1273	6.3938E-05	0.28739	0.00014434	0.41469	0.00020828	502.2563841678912	35.983	0.79819	35.983	35.791	36.589	0					69	31	4	0	0	0	0.0016755	2	6070	6070;6118		117.76	14.341	1	457260			1952	4738	1329	1339	2611;2612	2611					-0.0029602817870681974
DVAEVDTVR	9	Unmodified	_DVAEVDTVR_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2563781738281	2	502.256371	1002.49819	0.1661	8.3424E-05	0.4329	0.00021742	0.59899	0.00030085	502.256334682686	35.919	0.59592	35.998	35.791	36.387	0.078827					53	22	4	0	0	0	0.0056336	2	5924	5924;5973		80.676	6.4764	1	327880			1953	4738	1329	1339	2613;2614	2613					-0.0029602817870681974
DVAEVDTVRR	10	Unmodified	_DVAEVDTVRR_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.306884765625	2	580.306926	1158.5993	-0.032288	-1.8737E-05	0.041505	2.4086E-05	0.009217	5.3487E-06	580.3070225359908	30.029	0.608	30.029	29.844	30.452	0					58	28	3	0	0	0	0.26541	1	4303	4303		37.075	21.826	1	145120			1954	4738	1330	1340	2615	2615					0.0263442352400034
DVAEVDTVRR	10	Unmodified	_DVAEVDTVRR_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3070678710938	2	580.306926	1158.5993	0.074639	4.3313E-05	0.16596	9.6307E-05	0.2406	0.00013962	580.3070781836403	29.981	0.50382	30.056	29.882	30.386	0.075403					73	31	3	0	0	0	0.25648	2	4192	4154;4192		27.223	16.424	1	124840			1955	4738	1330	1340	2616;2617	2617					0.0263442352400034
DVAFTDPTL	9	Unmodified	_DVAFTDPTL_					0	0	0		ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7424621582031	2	489.742565	977.470577	-0.069672	-3.4122E-05	0.189	9.2562E-05	0.11933	5.8441E-05	489.74254083025124	72.171	0.43653	72.171	71.972	72.409	0					32	14	3	0	0	0	0.0074933	2	17049	17049;17103		74.929	32.834	1	254870			1956	3469	1331	1341	2618;2619	2618					-0.019059314389664905
DVAFTDPTL	9	Unmodified	_DVAFTDPTL_					0	0	0		ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7427978515625	2	489.742565	977.470577	0.073141	3.582E-05	0.37551	0.0001839	0.44865	0.00021972	489.7427245014393	72.113	0.51276	72.169	71.98	72.493	0.055931					34	17	3	0	0	0	0.0046499	2	16878	16878;16935		85.272	39.251	1	192630			1957	3469	1331	1341	2620;2621	2620					-0.019059314389664905
DVAQPDQTR	9	Unmodified	_DVAQPDQTR_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.25146484375	2	515.25162	1028.48869	-0.21376	-0.00011014	0.23824	0.00012275	0.024477	1.2612E-05	515.2516413488929	22.008	0.51277	22.008	21.811	22.324	0					97	47	3	0	0	0	0.22861	2	1986	1986;2034		15.248	7.093	1	51963			1958	1453	1332	1342	2622;2623	2622					-0.024417964642452716
DVAQPDQTR	9	Unmodified	_DVAQPDQTR_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.25146484375	2	515.25162	1028.48869	0.099848	5.1447E-05	-0.014184	-7.3084E-06	0.085664	4.4139E-05	515.2516259366615	21.826	0.3161	21.928	21.751	22.067	0.10178					63	35	2	0	0	0	0.22861	1	1846	1846		15.248	7.093	1	41316			1959	1453	1332	1342	2624	2624					-0.024417964642452716
DVAQPDQTRI	10	Unmodified	_DVAQPDQTRI_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7948608398438	2	571.793652	1141.57275	0.26998	0.00015437	0.98083	0.00056083	1.2508	0.0007152	571.7940794370027	37.771	0.28551	37.771	37.612	37.897	0					18	9	2	0	0	0	0.45133	1	6609	6609		4.5289	0	1	39832			1960	1453	1333	1343	2625	2625					0.0076273463266716135
DVAQVTGALR	10	Unmodified	_DVAQVTGALR_					0	0	0		ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2879638671875	2	515.288005	1028.56146	0.0025413	1.3095E-06	0.14699	7.5743E-05	0.14953	7.7053E-05	515.2879778170426	45.949	0.23058	45.949	45.808	46.039	0					11	7	2	0	0	0	0.27838	1	9099	9099		24.882	9.6331	1	73626			1961	1227	1334	1344	2626	2626					0.04831957329179204
DVAQVTGALR	10	Unmodified	_DVAQVTGALR_					0	0	0		ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	ENSG00000100985|ENST00000372330|MMP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2879028320312	2	515.288005	1028.56146	0.10843	5.5875E-05	1.059	0.00054568	1.1674	0.00060155	515.2882387773845	45.867	0.24477	45.952	45.788	46.032	0.085617					13	9	2	0	0	0	0.32754	1	8947	8947		19.626	9.4754	1	40184			1962	1227	1334	1344	2627	2627					0.04831957329179204
DVAQWLANSR	10	Unmodified	_DVAQWLANSR_					0	0	0			REV__nc|ENSG00000099869|Q6U949|IGF2-AS	REV__nc|ENSG00000099869|Q6U949|IGF2-AS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.306884765625	2	580.296362	1158.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.02	1	30.02	29.52	30.52	0								0	0	0	0.33035	1	4303	4303		11.495	2.1116	1		+		1963	12761	1335	1345	2628	2628					0.005224582151186041
DVASVIVTK	9	Unmodified	_DVASVIVTK_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.27630615234375	2	466.276575	930.538597	-0.22328	-0.00010411	0.18683	8.7116E-05	-0.036441	-1.6991E-05	466.2766660152564	45.307	0.77476	45.307	45.1	45.874	0					38	26	2	0	0	0	0.11816	1	8901	8901		28.495	6.9575	1	108340			1964	1221	1336	1346	2629	2629					0.07054938211729223
DVASVIVTK	9	Unmodified	_DVASVIVTK_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	466.276575	930.538597	-0.16299	-7.5999E-05	0.25059	0.00011684	0.087597	4.0845E-05	466.2768416791397	45.213	0.58283	45.3	45.089	45.671	0.087543	-0.0035097	3.1832E-05	NaN	28.495	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92917			1965	1221	1336	1346							0.07054938211729223
DVASVIVTKL	10	Unmodified	_DVASVIVTKL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.818603515625	2	522.818607	1043.62266	0.37023	0.00019356	-0.20476	-0.00010705	0.16547	8.6509E-05	522.8184415368246	68.111	0.90759	68.111	67.812	68.72	0					79	32	4	0	0	0	0.00070015	3	15854	15804;15854;15905		93.938	32.336	1	1448700			1966	1221	1337	1347	2630;2631;2632	2631					0.10259469308630287
DVASVIVTKL	10	Unmodified	_DVASVIVTKL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.8185424804688	2	522.818607	1043.62266	0.41605	0.00021752	-0.21234	-0.00011101	0.20371	0.0001065	522.818428407082	68.046	0.73653	68.11	67.904	68.64	0.063507					72	27	3	0	0	0	0.00040827	2	15652	15652;15696		97.741	36.139	1	1269100			1967	1221	1337	1347	2633;2634	2633					0.10259469308630287
DVAVVAGGLGR	11	Unmodified	_DVAVVAGGLGR_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.29156494140625	2	507.290548	1012.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.824	1	47.904	47.404	48.404	0.080029								0	0	0	0.15087	1	9523	9523		37.075	24.032	1				1968	771	1338	1348	2635	2635					0.06076261191822141
DVDEIIITV	9	Unmodified	_DVDEIIITV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.77911376953125	2	508.779148	1015.54374	0.21065	0.00010718	-0.059654	-3.0351E-05	0.151	7.6825E-05	508.7789716761207	102.73	0.42229	102.73	102.57	102.99	0					64	27	3	0	0	0	0.24021	1	26430	26430		13.906	0	1	173360	+		1969	9733	1339	1349	2636	2636					0.03659197283661797
DVDEIIITV	9	Unmodified	_DVDEIIITV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7796325683594	2	508.779148	1015.54374	0.38201	0.00019436	-0.0079505	-4.045E-06	0.37406	0.00019031	508.7789827938431	102.66	0.43388	102.7	102.53	102.97	0.040916					70	33	3	0	0	0	0.19398	1	26241	26241		19.257	0	1	162070	+		1970	9733	1339	1349	2637	2637					0.03659197283661797
DVDEPWMGAQL	11	Unmodified	_DVDEPWMGAQL_					0	0	0			REV__CCL1|p.L13Q|1|0.44|ENSG00000108702|chr17:34363124-34363124|A/T|missense_variant	REV__CCL1|p.L13Q|1|0.44|ENSG00000108702|chr17:34363124-34363124|A/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.7804565429688	2	630.781896	1259.54924	-0.57685	-0.00036387	-2.5368	-0.0016002	-3.1136	-0.001964	630.7805372231924	41.11	0.55143	41.11	40.881	41.433	0					44	19	3	0	0	0	0.39158	1	7647	7647		7.609	1.8771	1	78377	+		1971	7751	1340	1350	2638	2638					-0.07015447196158675
DVDVCAQR	8	Unmodified	_DVDVCAQR_					0	0	0			REV__ENSG00000142449|ENST00000600128|FBN3	REV__ENSG00000142449|ENST00000600128|FBN3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2101745605469	2	453.210909	904.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.128	1	73.128	72.628	73.628	0								0	0	0	0.38822	1	17360	17360		2.3027	0	1		+		1972	9432	1341	1351	2639	2639					-0.04876195427846142
DVEIIFNER	9	Unmodified	_DVEIIFNER_					0	0	0		ENST00000491982.1_1_22:36174014-36236265:-|nuORF;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000078328|Q9NWB1-2|RBFOX1;nc|ENSG00000100320|O43251-7|RBFOX2;ENSG00000078328|ENST00000550418|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000167281|A6NFN3|RBFOX3;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;nc|ENSG00000100320|O43251-9|RBFOX2;ENSG00000167281|ENST00000693108|RBFOX3;nc|ENSG00000167281|A6NFN3-2|RBFOX3;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000491982.1_1_22:36174014-36236265:-|nuORF	ENST00000491982.1_1_22:36174014-36236265:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.31298828125	2	567.793121	1133.57169	0.4069	0.00023103	-0.10749	-6.1033E-05	0.2994	0.00017	567.793366344782	60.08	0.46745	60.08	59.867	60.335	0					25	16	2	0	0	0	0.20966	1	13428	13428		17.443	2.861	1	129630			1973	871	1342	1352	2640	2640					0.010245202637634065
DVEIIFNER	9	Unmodified	_DVEIIFNER_					0	0	0		ENST00000491982.1_1_22:36174014-36236265:-|nuORF;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000078328|Q9NWB1-2|RBFOX1;nc|ENSG00000100320|O43251-7|RBFOX2;ENSG00000078328|ENST00000550418|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000167281|A6NFN3|RBFOX3;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;nc|ENSG00000100320|O43251-9|RBFOX2;ENSG00000167281|ENST00000693108|RBFOX3;nc|ENSG00000167281|A6NFN3-2|RBFOX3;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000491982.1_1_22:36174014-36236265:-|nuORF	ENST00000491982.1_1_22:36174014-36236265:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3125610351562	2	567.793121	1133.57169	0.14402	8.1774E-05	0.10111	5.741E-05	0.24513	0.00013918	567.7932593633003	60.024	0.29809	60.096	59.911	60.21	0.072338					19	10	2	0	0	0	0.2359	1	13255	13255		14.405	0	1	103480			1974	871	1342	1352	2641	2641					0.010245202637634065
DVEPCRQLIE	10	Unmodified	_DVEPCRQLIE_					0	0	0			REV__ENSG00000133302|ENST00000265140|SLF1	REV__ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7794189453125	2	601.297713	1200.58087	0.33305	0.00020026	-0.15251	-9.1707E-05	0.18054	0.00010856	601.2976746404818	46.662	1.3451	46.662	46.267	47.612	0					86	59	2	0	0	0	0.44496	1	9557	9557		5.7319	0.83484	1	325500	+		1975	9148	1343	1353	2642	2642					-0.011394544422273611
DVFADEFIF	9	Unmodified	_DVFADEFIF_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7584228515625	2	551.758215	1101.50188	0.3764	0.00020768	0.17279	9.5338E-05	0.54918	0.00030302	551.7582131467755	102.44	0.86592	102.44	102.18	103.04	0					172	59	4	0	0	0	0.0042542	4	26283	26246;26283;26322;26363		100.37	66.269	1	979600			1976	1979	1344	1354	2643;2644;2645;2646	2644					-0.04481358404859748
DVFADEFIF	9	Unmodified	_DVFADEFIF_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7584838867188	2	551.758215	1101.50188	0.57686	0.00031829	0.0080161	4.423E-06	0.58487	0.00032271	551.7581048757651	102.38	0.83275	102.42	102.15	102.98	0.040909					162	61	4	0	0	0	0.0025191	4	26110	26069;26110;26148;26184		112.59	70.499	1	865810			1977	1979	1344	1354	2647;2648;2649;2650	2648					-0.04481358404859748
DVFEQVAEGM	10	Unmodified	_DVFEQVAEGM_					0	0	0			REV__ENST00000464884.1_1_3:155830239-155830734:-|nuORF	REV__ENST00000464884.1_1_3:155830239-155830734:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7474365234375	2	562.750064	1123.48558	0.28626	0.0001611	-1.3519	-0.0007608	-1.0657	-0.0005997	562.749352085126	102.43	0.47693	102.43	102.22	102.69	0					56	31	2	0	0	0	0.43214	1	26242	26242		8.1555	0	1	137330	+		1978	7998	1345	1355	2651	2651					-0.07122807633254524
DVFNSVAFDF	10	Unmodified	_DVFNSVAFDF_					0	0	0			REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7642822265625	2	580.766571	1159.51859	0.4668	0.0002711	-3.8608	-0.0022422	-3.394	-0.0019711	580.7639464870151	94.647	0.60333	94.647	94.371	94.974	0					39	24	2	0	0	0	0.46083	1	23877	23877		2.7352	0.43246	1	90757	+		1979	10186	1346	1356	2652	2652					-0.05478857518892255
DVFPNQPGGKR	11	Unmodified	_DVFPNQPGGKR_					0	0	0		ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3	ENST00000464034.5_1_22:24179058-24179882:-|nuORF	ENST00000464034.5_1_22:24179058-24179882:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5472717285156	3	405.5474	1213.62037	0.084457	3.4251E-05	0.39424	0.00015988	0.4787	0.00019414	405.54741979286194	31.001	0.65499	31.001	30.757	31.412	0					74	31	4	0	0	0	0.35043	2	4575	4575;4623		6.6235	0.75532	1	91962			1980	1144	1347	1357	2653;2654	2653					0.02210433623508834
DVFPNQPGGKR	11	Unmodified	_DVFPNQPGGKR_					0	0	0		ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3	ENST00000464034.5_1_22:24179058-24179882:-|nuORF	ENST00000464034.5_1_22:24179058-24179882:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.54754638671875	3	405.5474	1213.62037	-0.276	-0.00011193	0.77844	0.00031569	0.50244	0.00020376	405.54763826279134	30.981	0.643	31.055	30.813	31.456	0.07378					74	31	3	0	0	0	0.38315	2	4451	4451;4494		4.1166	0.52395	1	87143			1981	1144	1347	1357	2655;2656	2655					0.02210433623508834
DVFRDPALKR	10	Unmodified	_DVFRDPALKR_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2314758300781	3	406.231412	1215.67241	0.24518	9.9602E-05	0.32271	0.0001311	0.5679	0.0002307	406.23157543704593	34.476	1.3307	34.476	34.206	35.537	0					152	50	4	0	0	0	0.33957	2	5634	5590;5634		18.34	14.984	1	499580			1982	2531	1348	1358	2657;2658	2658					0.07319597037235326
DVFRDPALKR	10	Unmodified	_DVFRDPALKR_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.23150634765625	3	406.231412	1215.67241	-0.12458	-5.0609E-05	0.53168	0.00021599	0.4071	0.00016538	406.231529404501	34.397	0.82587	34.473	34.249	35.075	0.076244					103	35	4	0	0	0	0.30431	2	5495	5452;5495		22.109	16.706	1	581350			1983	2531	1348	1358	2659;2660	2660					0.07319597037235326
DVFRFAKNFA	10	Unmodified	_DVFRFAKNFA_					0	0	0		nc|ENSG00000197355|Q3KQV9-2|UAP1L1;ENSG00000197355|ENST00000409858|UAP1L1	nc|ENSG00000197355|Q3KQV9-2|UAP1L1	nc|ENSG00000197355|Q3KQV9-2|UAP1L1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.8180541992188	2	607.819473	1213.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.009	1	31.009	30.509	31.509	0								0	0	0	0.33892	1	4596	4596		1.4819	0.15237	1				1984	5288	1349	1359	2661	2661					0.026125231172272834
DVFVVGTER	9	Unmodified	_DVFVVGTER_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-5|GTF2I;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2691345214844	2	511.269281	1020.52401	0.18248	9.3296E-05	-0.088912	-4.5458E-05	0.093567	4.7838E-05	511.26910586941267	48.93	0.50908	48.93	48.714	49.223	0					38	17	3	0	0	0	0.0085356	3	10000	10000;10010;10055		71.708	37.306	1	232630			1985	4582	1350	1360	2662;2663;2664	2662					0.0145686606357458
DVFVVGTER	9	Unmodified	_DVFVVGTER_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-5|GTF2I;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.26922607421875	2	511.269281	1020.52401	0.099418	5.0829E-05	0.069774	3.5673E-05	0.16919	8.6502E-05	511.26923215017354	48.861	0.46579	48.938	48.719	49.185	0.076607					36	16	3	0	0	0	0.024248	1	9844	9844		55.235	33.698	1	163890			1986	4582	1350	1360	2665	2665					0.0145686606357458
DVFYPGTGR	9	Unmodified	_DVFYPGTGR_					0	0	0		nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.24835205078125	2	506.248349	1010.48214	-0.25966	-0.00013145	1.3395	0.0006781	1.0798	0.00054665	506.24907377391816	44.657	0.49726	44.657	44.387	44.884	0					34	17	3	0	0	0	0.2546	1	8707	8707		12.241	2.8575	1	95126			1987	398	1351	1361	2666	2666					-0.02267689624943614
DVGDEHPVL	9	Unmodified	_DVGDEHPVL_					0	0	0			REV__ENSG00000090432|ENST00000264198|MUL1	REV__ENSG00000090432|ENST00000264198|MUL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7381286621094	2	490.737814	979.461075	0.20958	0.00010285	0.065294	3.2042E-05	0.27488	0.00013489	490.7376304955807	36.871	0.50671	36.953	36.79	37.297	0.081715					30	19	2	0	0	0	0.26684	1	6209	6209		10.824	3.5347	1	82074	+		1988	8302	1352	1362	2667	2667					-0.02947699724472841
DVHAKPVQAI	10	Unmodified	_DVHAKPVQAI_					0	0	0			REV__ENST00000475550.5_1_2:64069329-64114799:+|nuORF	REV__ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.839111328125	2	539.306198	1076.59784	0.4048	0.00021831	-0.64261	-0.00034656	-0.23781	-0.00012825	539.305674781391	49.965	0.28518	50.038	49.896	50.181	0.07312					15	9	2	0	0	0	0.30541	1	10179	10179		19.257	3.1079	1	46455	+		1989	10187	1353	1363	2668	2668					0.06260834225895451
DVHAKPVQAI	10	Unmodified	_DVHAKPVQAI_					0	0	0			REV__ENST00000475550.5_1_2:64069329-64114799:+|nuORF	REV__ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	539.306198	1076.59784	0.24328	0.00013121	0.16471	8.8832E-05	0.408	0.00022004	539.3060545816217	50.019	0.33015	50.019	49.876	50.206	0	-0.0097228	0.00029901	NaN	25.399	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132420	+		1990	10187	1353	1363							0.06260834225895451
DVHEIMAGHD	10	Unmodified	_DVHEIMAGHD_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2439575195312	2	562.24548	1122.47641	0.21444	0.00012057	-2.4711	-0.0013894	-2.2567	-0.0012688	562.2440405892917	49.483	0.82877	49.483	49.195	50.024	0					47	28	3	0	0	0	0.37232	1	10188	10188		14.838	4.0143	1	212400	+		1991	10231	1354	1364	2669	2669					-0.07993156198926954
DVHFDSKVK	9	Unmodified	_DVHFDSKVK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7659912109375	2	537.782556	1073.55056	0.095331	5.1267E-05	-0.67325	-0.00036206	-0.57792	-0.0003108	537.7821013656129	29.077	0.31909	29.155	28.992	29.311	0.078287					29	21	2	0	0	0	0.3354	1	3934	3934		2.0598	0.21551	1	17845			1992	4099	1355	1365	2670	2670					0.016725549548937124
DVHFDSKVK	9	Unmodified	_DVHFDSKVK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	537.782556	1073.55056	-0.079216	-4.2601E-05	-0.14652	-7.8796E-05	-0.22574	-0.0001214	537.7823952245499	29.231	0.41339	29.231	29.009	29.423	0	0.038043	0.00042864	NaN	2.0598	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14847			1993	4099	1355	1365							0.016725549548937124
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2517700195312	2	538.251423	1074.48829	0.24395	0.00013131	-0.070478	-3.7935E-05	0.17347	9.3372E-05	538.2514863389981	49.481	3.481	49.481	49.223	52.704	0					299	121	5	0	0	0	6.8107E-09	7	10160	10116;10160;10204;10256;10310;10409;10717		164.52	130.41	1	8131300			1994	2279	1356	1366	2671;2672;2673;2674;2675;2676;2677	2672					-0.04597171393447752
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.251708984375	2	538.251423	1074.48829	0.35098	0.00018892	-0.16576	-8.9219E-05	0.18523	9.9698E-05	538.2514209187112	49.419	2.9058	49.496	49.216	52.122	0.076603					250	106	5	0	0	0	1.0762E-12	7	10008	9961;10008;10050;10093;10143;10558;10573		180.01	145.91	1	7895700			1995	2279	1356	1366	2678;2679;2680;2681;2682;2683;2684	2679					-0.04597171393447752
DVHGPDWNL	9	Unmodified	_DVHGPDWNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.743408203125	2	526.743431	1051.47231	0.2234	0.00011767	-0.18841	-9.9244E-05	0.034989	1.843E-05	526.7433773224315	58.096	0.38846	58.096	57.829	58.217	0					45	13	5	0	0	0	0.0028323	2	12801	12758;12801		110.67	62.329	1	3116300			1996	2279	1357	1367	2685;2686	2686					-0.051368776303661434
DVHGPDWNL	9	Unmodified	_DVHGPDWNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7435302734375	2	526.743431	1051.47231	-0.014149	-7.4531E-06	0.86915	0.00045782	0.855	0.00045036	526.7434913660796	58.371	0.6465	58.371	58.256	58.903	0					52	23	3	0	0	0	0.020768	2	12862	12862;12979		57.722	28.64	1	437150			1997	2279	1357	1367	2687;2688	2687					-0.051368776303661434
DVHGPDWNL	9	Unmodified	_DVHGPDWNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.74365234375	2	526.743431	1051.47231	0.19795	0.00010427	0.022285	1.1739E-05	0.22024	0.00011601	526.7433745366377	57.996	0.51317	58.065	57.669	58.182	0.068375					47	19	5	0	0	0	0.0034016	1	12590	12590		107.19	74.882	1	2688100			1998	2279	1357	1367	2689	2689					-0.051368776303661434
DVHGPDWNL	9	Unmodified	_DVHGPDWNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7434692382812	2	526.743431	1051.47231	0.14859	7.8269E-05	0.096032	5.0584E-05	0.24462	0.00012885	526.7434271561992	58.221	0.64642	58.291	58.184	58.83	0.070477					54	22	4	0	0	0	0.0046402	2	12686	12686;12746		85.642	53.336	1	886950			1999	2279	1357	1367	2690;2691	2690					-0.051368776303661434
DVHIGLTSDL	10	Unmodified	_DVHIGLTSDL_					0	0	0			REV__ENSG00000100601|ENST00000216489|ALKBH1	REV__ENSG00000100601|ENST00000216489|ALKBH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.7412109375	2	535.279846	1068.54514	0.3727	0.0001995	0.26285	0.0001407	0.63554	0.00034019	535.2797656996836	58.026	0.50671	58.026	57.71	58.217	0					31	17	2	0	0	0	0.31496	1	12775	12775		13.906	2.2658	1	120560	+		2000	8400	1358	1368	2692	2692					0.013608313724262189
DVHKMVVSI	9	Unmodified	_DVHKMVVSI_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.244873046875	2	514.283877	1026.5532	0.6331	0.00032559	-1.145	-0.00058887	-0.51193	-0.00026328	514.7850000474384	54.816	0.39873	54.816	54.587	54.986	0					24	15	3	0	0	0	0.21603	1	11766	11766		20.454	4.6064	1	149570			2001	2707	1359	1369	2693	2693					0.04098687088207953
DVHKMVVSI	9	Unmodified	_DVHKMVVSI_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.244873046875	2	514.283877	1026.5532	0.65212	0.00033538	-0.76415	-0.00039299	-0.11203	-5.7613E-05	514.7850906741623	54.712	0.43825	54.777	54.65	55.089	0.065128					26	19	2	0	0	0	0.20845	1	11666	11666		21.747	9.2151	1	105600			2002	2707	1359	1369	2694	2694					0.04098687088207953
DVHNAEFVL	9	Unmodified	_DVHNAEFVL_					0	0	0		nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.75341796875	2	522.261456	1042.50836	0.32653	0.00017053	-0.09269	-4.8408E-05	0.23384	0.00012212	522.26126566918	47.216	0.64998	47.299	47.06	47.709	0.083096					53	25	3	0	0	0	0.24021	1	9402	9402		13.906	3.8321	1	512240			2003	3652	1360	1370	2695	2695					-0.011194204534831442
DVIDEIISL	9	Unmodified	_DVIDEIISL_					0	0	0		ENST00000481606.1_1_X:48895525-48895760:-|nuORF;ENSG00000068323|ENST00000315869|TFE3	ENST00000481606.1_1_X:48895525-48895760:-|nuORF	ENST00000481606.1_1_X:48895525-48895760:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.779052734375	2	508.779148	1015.54374	0.21065	0.00010718	-0.059654	-3.0351E-05	0.151	7.6825E-05	508.7789716761207	102.73	0.42229	102.73	102.57	102.99	0					64	27	3	0	0	0	0.091044	2	26384	26344;26384		34.402	5.3201	1	173360			2004	726	1361	1371	2696;2697	2697					0.03659197283673166
DVIDEIISL	9	Unmodified	_DVIDEIISL_					0	0	0		ENST00000481606.1_1_X:48895525-48895760:-|nuORF;ENSG00000068323|ENST00000315869|TFE3	ENST00000481606.1_1_X:48895525-48895760:-|nuORF	ENST00000481606.1_1_X:48895525-48895760:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7789611816406	2	508.779148	1015.54374	0.38201	0.00019436	-0.0079505	-4.045E-06	0.37406	0.00019031	508.7789827938431	102.66	0.43388	102.7	102.53	102.97	0.040916					70	33	3	0	0	0	0.01063	2	26200	26200;26248		65.235	6.5562	1	162070			2005	726	1361	1371	2698;2699	2698					0.03659197283673166
DVIGMMPF	8	Unmodified	_DVIGMMPF_					0	0	0			REV__ENSG00000007216|ENST00000314669|SLC13A2	REV__ENSG00000007216|ENST00000314669|SLC13A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.8797912597656	2	455.214075	908.413596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.099	1	75.099	74.599	75.599	0								0	0	0	0.38822	1	17963	17963		2.8892	0	1		+		2006	7954	1362	1372	2700	2700					-0.04427393520666101
DVIIGETLHP	10	Unmodified	_DVIIGETLHP_					0	0	0			REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2855834960938	2	547.298039	1092.58152	0.099861	5.4654E-05	-0.39268	-0.00021492	-0.29282	-0.00016026	547.297726244361	39.763	0.45639	39.852	39.608	40.064	0.088566					21	16	2	0	0	0	0.44246	1	7102	7102		6.2058	0.47393	1	28836	+		2007	8798	1363	1373	2701	2701					0.0389370826915183
DVILECLGF	9	Unmodified	_DVILECLGF_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.25555419921875	2	504.757161	1007.49977	0.40977	0.00020683	0.40326	0.00020355	0.81303	0.00041038	504.75726778684043	71.212	0.41123	71.27	71.026	71.437	0.058578					21	14	2	0	0	0	0.2404	1	16611	16611		13.508	2.3934	1	158600			2008	2897	1364	1374	2702	2702					-0.0036811041431974445
DVILIGTTR	9	Unmodified	_DVILIGTTR_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1;ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENSG00000066629|ENST00000262233|EML1;ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENST00000554111.1_1_14:100376608-100381157:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7664489746094	2	494.295299	986.576045	0.32243	0.00015938	0.090116	4.4544E-05	0.41255	0.00020392	494.29542838773364	53.084	0.31484	53.084	52.898	53.213	0					22	11	3	0	0	0	0.15837	1	11275	11275		34.932	9.9411	1	84738			2009	701;7114	1365	1375	2703	2703					0.08222029477326487
DVILIGTTR	9	Unmodified	_DVILIGTTR_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1;ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENSG00000066629|ENST00000262233|EML1;ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENST00000554111.1_1_14:100376608-100381157:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.76629638671875	2	494.295299	986.576045	0.45783	0.0002263	-0.49279	-0.00024358	-0.034965	-1.7283E-05	494.2950810881251	53.031	0.36097	53.097	52.909	53.27	0.06543					25	16	2	0	0	0	0.16724	1	11109	11109		33.445	7.1768	1	113940			2010	701;7114	1365	1375	2704	2704					0.08222029477326487
DVIPEDHRL	9	Unmodified	_DVIPEDHRL_					0	0	0		ENST00000488537.1_1_1:145440673-145441098:+|nuORF;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENSG00000265972|ENST00000582401|TXNIP	ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENST00000488537.1_1_1:145440673-145441098:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2855834960938	2	547.285463	1092.55637	-0.013249	-7.251E-06	-0.096093	-5.259E-05	-0.10934	-5.9841E-05	547.2852939779822	39.774	0.69253	39.774	39.379	40.071	0					60	24	4	0	0	0	0.21622	1	7259	7259		21.537	7.6309	1	312440			2011	5729	1366	1376	2705	2705					0.01379653466574382
DVIPEDHRL	9	Unmodified	_DVIPEDHRL_					0	0	0		ENST00000488537.1_1_1:145440673-145441098:+|nuORF;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENSG00000265972|ENST00000582401|TXNIP	ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENST00000488537.1_1_1:145440673-145441098:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.28515625	2	547.285463	1092.55637	0.11149	6.1017E-05	-0.22843	-0.00012502	-0.11694	-6.3999E-05	547.2852500683709	39.689	0.67653	39.778	39.341	40.018	0.088566					56	26	3	0	0	0	0.20294	1	7057	7057		24.991	6.8446	1	262800			2012	5729	1366	1376	2706	2706					0.01379653466574382
DVIRPLFGWRR	11	Unmodified	_DVIRPLFGWRR_					0	0	0		ENST00000534938.6_2_14:75179894-75180224:+|nuORF	ENST00000534938.6_2_14:75179894-75180224:+|nuORF	ENST00000534938.6_2_14:75179894-75180224:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7518310546875	3	472.273722	1413.79934	0.32715	0.0001545	-0.29068	-0.00013728	0.036466	1.7222E-05	472.27351610848245	54.849	0.47733	54.914	54.738	55.216	0.065128					32	19	2	0	0	0	0.31089	1	11650	11650		2.6312	0.54523	1	187310			2013	7041	1367	1377	2707	2707					0.10898942982248627
DVISNINITR	10	Unmodified	_DVISNINITR_					0	0	0		ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5	ENST00000491144.5_1_3:183853173-183855624:+|nuORF	ENST00000491144.5_1_3:183853173-183855624:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7958984375	2	572.81967	1143.62479	0.57138	0.0003273	0.24436	0.00013997	0.81573	0.00046727	572.8196062068516	54.659	0.22676	54.659	54.6	54.827	0					12	8	2	0	0	0	0.29071	1	11720	11720		28.234	14.619	1	74267			2014	3237	1368	1378	2708	2708					0.05871898046393653
DVIVTPNIL	9	Unmodified	_DVIVTPNIL_					0	0	0			REV__ENST00000497464.5_1_2:73957656-73964442:-|nuORF	REV__ENST00000497464.5_1_2:73957656-73964442:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2924499511719	2	492.292225	982.569897	0.45427	0.00022363	-0.1119	-5.5086E-05	0.34237	0.00016855	492.29213422023497	81.629	0.51682	81.651	81.421	81.938	0.021866					30	18	2	0	0	0	0.32614	1	19867	19867		3.2813	0.39209	1	76083	+		2015	9484	1369	1379	2709	2709					0.07791511245807214
DVKDLHQD	8	Unmodified	_DVKDLHQD_					0	0	0		ENST00000470960.1_1_12:107262187-107268295:+|nuORF;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B	ENST00000470960.1_1_12:107262187-107268295:+|nuORF	ENST00000470960.1_1_12:107262187-107268295:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2482604980469	2	485.235439	968.456324	-0.36622	-0.0001777	0.5617	0.00027256	0.19548	9.4854E-05	485.23568024517607	39.978	0.68074	39.978	39.661	40.341	0					45	23	3	0	0	0	0.53494	1	7385	7385		4.756	0.42677	1	113390			2016	6666	1370	1380	2710	2710					-0.029165838672497557
DVLENPSKKRP	11	Unmodified	_DVLENPSKKRP_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3602905273438	2	641.859326	1281.7041	-0.11697	-7.5077E-05	-0.041059	-2.6354E-05	-0.15803	-0.00010143	641.8587427259816	114.56	0.28052	114.56	114.42	114.7	0					84	37	4	0	0	0	0.39744	2	29243	29243;29262		4.897	0	1	115710	+		2017	8289	1371	1381	2711;2712	2711					0.07451545000549231
DVLENPSKKRP	11	Unmodified	_DVLENPSKKRP_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8592529296875	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.78	1	106.8	106.3	107.3	0.025711								0	0	0	0.32823	1	27344	27344		4.897	0	1		+		2018	8289	1371	1381	2713	2713					0.07451545000549231
DVLENPSKKRP	11	Unmodified	_DVLENPSKKRP_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8566284179688	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.47	1	108.49	107.99	108.99	0.022224								0	0	0	0.32823	1	27761	27761		4.897	0	1		+		2019	8289	1371	1381	2714	2714					0.07451545000549231
DVLENPSKKRP	11	Unmodified	_DVLENPSKKRP_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	641.859326	1281.7041	-0.11697	-7.5077E-05	-0.041059	-2.6354E-05	-0.15803	-0.00010143	641.8587427259816	114.56	0.28052	114.56	114.42	114.7	0	0.052978	-0.000216	NaN	4.897	84	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115710	+		2020	8289	1371	1381							0.07451545000549231
DVLENPSKKRP	11	Unmodified	_DVLENPSKKRP_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	641.859326	1281.7041	0.19303	0.0001239	0.42414	0.00027224	0.61718	0.00039614	641.8595587517522	114.44	0.037201	114.45	114.43	114.47	0.013336	-0.052978	0.00038119	NaN	4.897	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23689	+		2021	8289	1371	1381							0.07451545000549231
DVLGQQKI	8	Unmodified	_DVLGQQKI_					0	0	0			REV__nc|ENSG00000106070|Q13322-3|GRB10	REV__nc|ENSG00000106070|Q13322-3|GRB10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.7606506347656	2	450.761092	899.507631	0.15294	6.8938E-05	-0.083717	-3.7736E-05	0.069219	3.1201E-05	450.7608420086685	38.942	0.49958	39.029	38.795	39.295	0.08688					25	19	2	0	0	0	0.50159	1	6861	6861		12.532	0	1	30227	+		2022	8566	1372	1382	2715	2715					0.053857848974644185
DVLGQQKI	8	Unmodified	_DVLGQQKI_					0	0	0			REV__nc|ENSG00000106070|Q13322-3|GRB10	REV__nc|ENSG00000106070|Q13322-3|GRB10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	450.761092	899.507631	0.29377	0.00013242	-0.041945	-1.8907E-05	0.25183	0.00011351	450.7607259804264	39.061	1.1871	39.061	38.274	39.461	0	0.016015	2.4152E-05	NaN	12.532	45	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35060	+		2023	8566	1372	1382							0.053857848974644185
DVLNIQGVQR	10	Unmodified	_DVLNIQGVQR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3198852539062	2	571.319837	1140.62512	0.13978	7.9862E-05	-0.23492	-0.00013422	-0.095137	-5.4354E-05	571.3198310490318	51.056	0.32233	51.056	50.886	51.208	0					16	10	2	0	0	0	0.079509	1	10639	10639		49.527	34.279	1	64189			2024	5272	1373	1383	2716	2716					0.06043317766284417
DVLNIQGVQR	10	Unmodified	_DVLNIQGVQR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	571.319837	1140.62512	0.25773	0.00014725	-0.53641	-0.00030646	-0.27868	-0.00015922	571.3198376407628	50.928	0.32647	50.998	50.854	51.18	0.069878	-0.028881	-0.00020637	NaN	49.527	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52381			2025	5272	1373	1383							0.06043317766284417
DVLPRQINL	9	Unmodified	_DVLPRQINL_					0	0	0			REV__nc|ENSG00000135451|Q12815-3|TROAP	REV__nc|ENSG00000135451|Q12815-3|TROAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7407836914062	2	534.314023	1066.61349	0.44271	0.00023654	-3.7987	-0.0020297	-3.356	-0.0017932	534.3123993953325	58.209	0.085361	58.279	58.205	58.291	0.070477					4	2	2	0	0	0	0.25051	1	12660	12660		7.9102	1.187	1	54354	+		2026	7783	1374	1384	2717	2717					0.08285120742925756
DVLQLRAQ	8	Unmodified	_DVLQLRAQ_					0	0	0			REV__nc|ENSG00000125337|Q9UIL4-2|KIF25	REV__nc|ENSG00000125337|Q9UIL4-2|KIF25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.25830078125	2	471.771991	941.529429	-0.27662	-0.0001305	0.37004	0.00017457	0.09342	4.4073E-05	471.7719754082693	33.34	0.50226	33.414	33.262	33.765	0.074322					36	19	2	0	0	0	0.53423	1	5227	5227		5.2307	0	1	83898	+		2027	8970	1375	1385	2718	2718					0.05632589646052111
DVLSLVSHR	9	Unmodified	_DVLSLVSHR_					0	0	0			REV__ENST00000582438.1_1_17:80401329-80402344:-|nuORF	REV__ENST00000582438.1_1_17:80401329-80402344:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2904663085938	2	513.290548	1024.56654	-0.0051538	-2.6454E-06	0.054438	2.7943E-05	0.049285	2.5297E-05	513.2904486356914	33.608	1.0173	33.608	33.378	34.395	0					85	38	4	0	0	0	0.083124	1	5389	5389		36.127	0	1	354730	+		2028	11469	1376	1386	2719	2719					0.05524261191817459
DVLSLVSHR	9	Unmodified	_DVLSLVSHR_					0	0	0			REV__ENST00000582438.1_1_17:80401329-80402344:-|nuORF	REV__ENST00000582438.1_1_17:80401329-80402344:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	513.290548	1024.56654	0.030627	1.572E-05	-0.0034645	-1.7783E-06	0.027162	1.3942E-05	513.2904645037935	33.518	0.90491	33.592	33.401	34.305	0.074322	-0.00812	-2.591E-05	NaN	36.127	79	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329340	+		2029	11469	1376	1386							0.05524261191817459
DVNSFDWLSQL	11	Unmodified	_DVNSFDWLSQL_					0	0	0		DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.877685546875	3	441.878704	1322.61428	0.82924	0.00036642	-1.702	-0.00075208	-0.87276	-0.00038565	441.8778264857069	65.792	0.43938	65.792	65.549	65.988	0					21	15	2	0	0	0	0.37654	1	15120	15120		9.2438	0.26753	1	111560			2030	284	1377	1387	2720	2720					-0.03412129398657271
DVPRAQHF	8	Unmodified	_DVPRAQHF_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2478332519531	2	485.248683	968.482814	-0.32937	-0.00015983	-0.48571	-0.00023569	-0.81508	-0.00039552	485.2485804913031	40.173	0.77229	40.261	40.064	40.836	0.088562					37	29	2	0	0	0	0.53423	1	7245	7245		5.2307	0	1	33606	+		2031	10742	1378	1388	2721	2721					-0.0026885018525035775
DVQGPDWHL	9	Unmodified	_DVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3087158203125	2	533.751256	1065.48796	0.52922	0.00028247	0.37837	0.00020195	0.90759	0.00048443	533.7512366144264	60.371	0.51081	60.371	60.238	60.749	0					36	18	3	0	0	0	0.11557	1	13465	13465		41.84	22.583	1	213760			2032	2279	1379	1389	2722	2722					-0.04216591113299728
DVQGPDWHL	9	Unmodified	_DVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.30859375	2	533.751256	1065.48796	0.39305	0.00020979	0.094327	5.0347E-05	0.48738	0.00026014	533.7511505757504	60.278	0.44616	60.351	60.183	60.629	0.073421					25	15	2	0	0	0	0.15403	1	13317	13317		34.402	15.145	1	163730			2033	2279	1379	1389	2723	2723					-0.04216591113299728
DVSAPSAILR	10	Unmodified	_DVSAPSAILR_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7904052734375	2	514.790381	1027.56621	0.26251	0.00013514	-0.063303	-3.2588E-05	0.19921	0.00010255	514.7903335596865	49.855	0.19806	49.928	49.842	50.04	0.07312					10	6	3	0	0	0	0.40359	1	10154	10154		11.495	2.7493	1	45908			2034	3572	1380	1390	2724	2724					0.05352841471949432
DVSAPSAILR	10	Unmodified	_DVSAPSAILR_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	514.790381	1027.56621	0.24995	0.00012867	-0.15001	-7.7224E-05	0.099938	5.1447E-05	514.7902389525626	49.907	0.23029	49.907	49.794	50.024	0	-0.010725	-3.9261E-05	NaN	11.495	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38988			2035	3572	1380	1390							0.05352841471949432
DVSAYIPTN	9	Unmodified	_DVSAYIPTN_					0	0	0		ENST00000586523.1_1_18:43666964-43667180:-|nuORF;tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1;nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A	ENST00000586523.1_1_18:43666964-43667180:-|nuORF	ENST00000586523.1_1_18:43666964-43667180:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7661437988281	2	490.24019	978.465826	-0.18058	-8.8525E-05	-0.14443	-7.0808E-05	-0.32501	-0.00015933	490.2399793592917	43.918	0.49459	43.918	43.748	44.243	0					23	16	2	0	0	0	0.20845	1	8533	8533		21.747	9.2151	1	65354			2036	3491	1381	1391	2725	2725					-0.0242681558172535
DVSAYIPTN	9	Unmodified	_DVSAYIPTN_					0	0	0		ENST00000586523.1_1_18:43666964-43667180:-|nuORF;tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1;nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A	ENST00000586523.1_1_18:43666964-43667180:-|nuORF	ENST00000586523.1_1_18:43666964-43667180:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	490.24019	978.465826	-0.063693	-3.1225E-05	0.12787	6.2686E-05	0.064174	3.1461E-05	490.2401119424881	43.889	0.27043	43.978	43.793	44.064	0.088924	0.03003	0.00015354	NaN	26.884	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39083			2037	3491	1381	1391							-0.0242681558172535
DVSDSSFPK	9	Unmodified	_DVSDSSFPK_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2304382324219	2	491.229822	980.445091	0.19883	9.7673E-05	0.31519	0.00015483	0.51403	0.00025251	491.2297867139459	36.612	0.40391	36.612	36.429	36.833	0					22	14	2	0	0	0	0.30005	1	6260	6260		6.7232	0.51738	1	42853			2038	574	1382	1392	2726	2726					-0.045914059613664904
DVSDSSFPK	9	Unmodified	_DVSDSSFPK_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	491.229822	980.445091	0.19883	9.7673E-05	0.31519	0.00015483	0.51403	0.00025251	491.2297867139459	36.612	0.40391	36.612	36.429	36.833	0	0.00057655	3.4333E-05	NaN	6.7232	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42853			2039	574	1382	1392							-0.045914059613664904
DVSDSSFPK	9	Unmodified	_DVSDSSFPK_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	491.229822	980.445091	0.19909	9.7797E-05	0.2222	0.00010915	0.42128	0.00020695	491.22973430966084	36.529	0.33165	36.611	36.434	36.765	0.081715	-0.00057655	-5.703E-05	NaN	6.7232	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51286			2040	574	1382	1392							-0.045914059613664904
DVSHPIIYR	9	Unmodified	_DVSHPIIYR_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2982177734375	2	550.298373	1098.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.636	1	36.636	36.136	37.136	0								0	0	0	0.19984	1	6279	6279		18.146	1.9972	1				2041	4320	1383	1393	2727	2727					0.03684547708849095
DVSHPIIYR	9	Unmodified	_DVSHPIIYR_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2986450195312	2	550.298373	1098.58219	0.34509	0.0001899	0.36717	0.00020205	0.71225	0.00039195	550.2986715050882	36.483	0.5302	36.564	36.34	36.87	0.081715					49	22	3	0	0	0	0.19398	1	6100	6100		19.257	4.4187	1	88635			2042	4320	1383	1393	2728	2728					0.03684547708849095
DVSQTTVSR	9	Unmodified	_DVSQTTVSR_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.75384521484375	2	496.753995	991.493438	-0.112	-5.5634E-05	0.040518	2.0128E-05	-0.071478	-3.5507E-05	496.7539003483993	24.209	0.33409	24.209	24.074	24.408	0					53	32	2	0	0	0	0.19307	1	2600	2600		19.362	6.3195	1	34422			2043	5327	1384	1394	2729	2729					-0.0026491232148373456
DVTEYAVQR	9	Unmodified	_DVTEYAVQR_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2716674804688	2	540.769645	1079.52474	0.10417	5.6333E-05	0.94263	0.00050975	1.0468	0.00056608	540.7701573884774	39.383	0.53838	39.383	39.004	39.542	0					29	20	2	0	0	0	0.10543	1	7116	7116		31.268	21.885	1	60909			2044	1160	1385	1395	2730	2730					-0.011843392873743142
DVTEYAVQR	9	Unmodified	_DVTEYAVQR_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.769775390625	2	540.769645	1079.52474	0.2878	0.00015564	0.57452	0.00031068	0.86233	0.00046632	540.7698420106761	39.292	0.40689	39.381	39.201	39.608	0.088562					23	17	2	0	0	0	0.15837	1	6945	6945		34.932	21.89	1	72361			2045	1160	1385	1395	2731	2731					-0.011843392873743142
DVTIATLHR	9	Unmodified	_DVTIATLHR_					0	0	0			REV__ENST00000579253.1_1_17:26967576-26969063:-|nuORF	REV__ENST00000579253.1_1_17:26967576-26969063:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.29052734375	2	513.290548	1024.56654	0.030627	1.572E-05	-0.0034645	-1.7783E-06	0.027162	1.3942E-05	513.2904645037935	33.518	0.90491	33.592	33.401	34.305	0.074322					79	36	4	0	0	0	0.15282	1	5250	5250		24.021	0	1	329340	+		2046	7953	1386	1396	2732	2732					0.055242611917947215
DVTSITNSR	9	Unmodified	_DVTSITNSR_					0	0	0			REV__ENST00000507334.1_1_4:144359455-144361094:+|nuORF	REV__ENST00000507334.1_1_4:144359455-144361094:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7544250488281	2	496.753995	991.493438	0.076064	3.7785E-05	-0.32126	-0.00015959	-0.2452	-0.0001218	496.7539605644494	23.991	0.28834	24.09	23.975	24.263	0.099739					52	27	3	0	0	0	0.30397	1	2424	2424		6.2058	0	1	25786	+		2047	8641	1387	1397	2733	2733					-0.0026491232148373456
DVVQMVAQLV	10	Unmodified	_DVVQMVAQLV_					0	0	0		ENSG00000226174|ENST00000451127|TEX22	ENSG00000226174|ENST00000451127|TEX22	ENSG00000226174|ENST00000451127|TEX22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2681274414062	2	551.302267	1100.58998	0.38072	0.00020989	-0.77036	-0.0004247	-0.38964	-0.00021481	551.3012825266129	79.209	0.23652	79.236	79.126	79.362	0.026436					10	7	2	0	0	0	0.31747	1	19064	19064		5.7319	0.43497	1	99770			2048	5608	1388	1398	2734	2734					0.04370938914121325
DVVSLSSLDLK	11	Unmodified	_DVVSLSSLDLK_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8016967773438	2	588.329536	1174.64452	0.45765	0.00026925	-3.9431	-0.0023198	-3.4854	-0.0020506	588.8293396635216	58.492	0.30387	58.562	58.387	58.691	0.070477					14	9	2	0	0	0	0.29014	1	12730	12730		24.882	5.5196	1	67968			2049	4559	1389	1399	2735	2735					0.06418229266523667
DVWVIHIL	8	Unmodified	_DVWVIHIL_					0	0	0			REV__ENST00000524463.5_1_11:88058155-88058308:-|nuORF	REV__ENST00000524463.5_1_11:88058155-88058308:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.3158264160156	2	497.789653	993.564752	0.59778	0.00029757	-0.49421	-0.00024601	0.10357	5.1555E-05	497.7892983313167	63.911	0.67582	63.911	63.707	64.382	0					37	23	2	0	0	0	0.35759	1	14510	14510		13.508	1.8676	1	210510	+		2050	12316	1390	1400	2736	2736					0.06771252173848552
DVYELFLA	8	Unmodified	_DVYELFLA_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7796325683594	2	485.250026	968.485499	-0.32937	-0.00015983	-3.2527	-0.0015784	-3.582	-0.0017382	485.2485804913031	40.173	0.77229	40.261	40.064	40.836	0.088562					37	29	2	0	0	0	0.3576	1	7189	7189		2.5775	0.27475	1	33606	+		2051	8179	1391	1401	2737	2737					-4.395709652271762E-06
DVYPEIIER	9	Unmodified	_DVYPEIIER_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000102316|Q9UNF1-2|MAGED2	ENSG00000179222|ENST00000326587|MAGED1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2957763671875	2	567.295496	1132.57644	0.39151	0.0002221	0.53885	0.00030569	0.93036	0.00052779	567.2960742607074	55.689	0.51186	55.689	55.467	55.979	0					45	17	4	0	0	0	0.10323	1	12036	12036		40.725	22.579	1	744580			2052	4768;1308	1392	1402	2738	2738					0.015454044065336348
DVYPEIIER	9	Unmodified	_DVYPEIIER_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000102316|Q9UNF1-2|MAGED2	ENSG00000179222|ENST00000326587|MAGED1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2957153320312	2	567.295496	1132.57644	0.32044	0.00018179	0.40772	0.0002313	0.72816	0.00041308	567.2958886786935	55.63	0.51701	55.696	55.463	55.98	0.065128					44	18	3	0	0	0	0.15281	1	11886	11886		37.075	29.164	1	670700			2053	4768;1308	1392	1402	2739	2739					0.015454044065336348
DVYSDLNTQR	10	Unmodified	_DVYSDLNTQR_					0	0	0		ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.788818359375	2	605.788566	1209.56258	0.030605	1.854E-05	0.38076	0.00023066	0.41137	0.0002492	605.7886874765238	42.971	0.41428	42.971	42.764	43.179	0					39	13	4	0	0	0	0.00070094	2	8166	8166;8217		115.06	97.946	1	188450			2054	437	1393	1403	2740;2741	2740					-0.033818730925759155
DVYSDLNTQR	10	Unmodified	_DVYSDLNTQR_					0	0	0		ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7886962890625	2	605.788566	1209.56258	0.24529	0.0001486	0.24004	0.00014541	0.48534	0.00029401	605.7885241709747	42.861	0.43287	42.951	42.754	43.187	0.089764					39	16	3	0	0	0	0.0034575	2	8010	8010;8064		101.54	84.431	1	200460			2055	437	1393	1403	2742;2743	2742					-0.033818730925759155
DWEEKRHFR	9	Unmodified	_DWEEKRHFR_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88214111328125	3	434.882782	1301.62652	0.56089	0.00024392	-1.2641	-0.00054975	-0.70326	-0.00030583	434.88210309348733	60.782	0.86015	60.782	60.558	61.418	0					68	30	4	0	0	0	0.34289	1	13765	13765		1.0715	0.29493	1	173550			2056	458	1394	1404	2744	2744					-0.012230481449705621
DWGDELAAP	9	Unmodified	_DWGDELAAP_					0	0	0			REV__ENST00000582620.5_1_18:72167208-72179735:+|nuORF	REV__ENST00000582620.5_1_18:72167208-72179735:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2447509765625	2	487.216714	972.418876	0.026682	1.3E-05	0.21724	0.00010584	0.24392	0.00011884	487.21485000440066	49.452	0.45025	49.452	49.314	49.764	0					26	15	3	0	0	0	0.25416	1	10183	10183		5.2307	0	1	52582	+		2057	9149	1395	1405	2745	2745					-0.0684367513287043
DWHWFCVWWMH	11	Unmodified	_DWHWFCVWWMH_					0	0	0			REV__ENSG00000182372|ENST00000331222|CLN8	REV__ENSG00000182372|ENST00000331222|CLN8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2206420898438	3	544.893637	1631.65908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.464	1	20.464	19.964	20.964	0								0	0	0	0.34212	1	1617	1617		0	0	1		+		2058	10562	1396	1406	2746	2746					-0.13148300337957153
DWIVRSRPT	9	Unmodified	_DWIVRSRPT_					0	0	0		ENST00000323011.7_1_18:63476946-63481738:+|nuORF	ENST00000323011.7_1_18:63476946-63481738:+|nuORF	ENST00000323011.7_1_18:63476946-63481738:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3077392578125	2	565.309272	1128.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.938	1	16.01	15.51	16.51	0.072399								0	0	0	0.28807	1	579	579		1.4819	0	1				2059	6037	1397	1407	2747	2747					0.04483352457418732
DWLKKRCF	8	Unmodified	_DWLKKRCF_					0	0	0		ENST00000527505.1_1_11:27076962-27137060:+|nuORF;ENSG00000129151|ENST00000263182|BBOX1	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2810668945312	2	548.292037	1094.56952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.05	1	105.08	104.58	105.58	0.034004								0	0	0	0.38822	1	26872	26872		2.8892	0	1				2060	2420	1398	1408	2748	2748					0.026018130449529053
DWLRRMPR	8	Unmodified	_DWLRRMPR_					0	0	0		ENST00000453097.6_1_12:51818574-51818652:+|nuORF	ENST00000453097.6_1_12:51818574-51818652:+|nuORF	ENST00000453097.6_1_12:51818574-51818652:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3072509765625	2	565.30601	1128.59747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.011	1	16.011	15.511	16.511	0								0	0	0	0.38822	1	651	651		0.69038	0.088878	1				2061	6573	1399	1409	2749	2749					0.03831136025041815
DWPNFAVG	8	Unmodified	_DWPNFAVG_					0	0	0			REV__ENST00000547407.5_1_16:711076-715728:+|nuORF	REV__ENST00000547407.5_1_16:711076-715728:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.20965576171875	2	453.211235	904.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.514	1	97.514	97.014	98.014	0								0	0	0	0.38822	1	24789	24789		0.79363	0	1		+		2062	9872	1400	1410	2750	2750					-0.048110327164636146
DWRRSGTTCAR	11	Unmodified	_DWRRSGTTCAR_					0	0	0			REV__ENSG00000213203|ENST00000307194|GIMAP1	REV__ENSG00000213203|ENST00000307194|GIMAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.87939453125	3	436.879044	1307.6153	0.74357	0.00032485	1.4174	0.00061922	2.1609	0.00094407	436.8790599724461	82.288	0.52575	82.288	82.008	82.534	0					28	18	2	0	0	0	0.41731	1	20127	20127		0.36667	0.097654	1	57005	+		2063	10992	1401	1411	2751	2751					-0.026201935107565077
DYAELLQHF	9	Unmodified	_DYAELLQHF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8394165039062	2	568.274564	1134.53457	0.36243	0.00020596	-0.35501	-0.00020175	0.0074185	4.2157E-06	568.2741014411911	74.636	0.59024	74.636	74.37	74.961	0					52	21	4	0	0	0	0.00043425	1	17809	17809		106.94	72.538	1	446640			2064	1346	1402	1412	2752	2752					-0.0273115128200061
DYAELLQHF	9	Unmodified	_DYAELLQHF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8395385742188	2	568.274564	1134.53457	0.36772	0.00020897	-0.52157	-0.00029639	-0.15384	-8.7425E-05	568.274047583538	74.612	0.66881	74.661	74.45	75.119	0.048546					48	23	4	0	0	0	0.003141	1	17653	17653		96.367	58.191	1	425790			2065	1346	1402	1412	2753	2753					-0.0273115128200061
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2271118164062	2	523.227279	1044.44001	0.48318	0.00025281	-0.25855	-0.00013528	0.22463	0.00011753	523.2270286813538	60.253	0.57367	60.253	60.069	60.643	0					43	20	3	0	0	0	0.002259	1	13430	13430		114.19	85.7	1	268820			2066	5070	1403	1413	2754	2754					-0.08043709823982681
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2273559570312	2	523.227279	1044.44001	0.11155	5.8365E-05	-0.049537	-2.5919E-05	0.06201	3.2445E-05	523.2272148915769	60.172	0.50547	60.245	60.045	60.55	0.073124					36	17	3	0	0	0	0.0068798	2	13263	13263;13311		76.825	53.676	1	212840			2067	5070	1403	1413	2755;2756	2755					-0.08043709823982681
DYAIWNTKF	9	Unmodified	_DYAIWNTKF_					0	0	0		ENSG00000181544|ENST00000650831|FANCB;FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant	ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.797119140625	2	579.284931	1156.55531	0.59474	0.00034452	-1.9404	-0.001124	-1.3456	-0.00077949	579.2834650080622	69.902	0.39996	69.902	69.643	70.043	0					27	13	3	0	0	0	0.038996	2	16367	16367;16416		45.74	25.325	1	151280			2068	4840	1404	1414	2757;2758	2757					-0.01670560902334728
DYALLMESTTI	11	Unmodified	_DYALLMESTTI_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.8076171875	2	628.807579	1255.60061	0.393	0.00024712	-1.3007	-0.00081792	-0.90775	-0.0005708	628.80655658468	64.583	0.78391	64.583	64.328	65.112	0					74	28	4	0	0	0	0.35693	1	14780	14780		11.495	0.6952	1	338980			2069	3954	1405	1415	2759	2759					-0.016971232221067112
DYARVPNSNPP	11	Unmodified	_DYARVPNSNPP_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.296875	2	615.299101	1228.58365	0.018571	1.1427E-05	-3.123	-0.0019216	-3.1045	-0.0019102	615.2965968582728	77.094	0.26748	77.128	76.935	77.203	0.034485					17	9	3	0	0	0	0.35043	1	18417	18417		12.241	1.4167	1	260670			2070	1308	1406	1416	2760	2760					-0.021498629930420066
DYATIFNNL	9	Unmodified	_DYATIFNNL_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.76171875	2	535.761289	1069.50803	0.25352	0.00013583	-0.23085	-0.00012368	0.02268	1.2151E-05	535.76154962873	86.34	0.80895	86.34	85.83	86.639	0					79	30	4	0	0	0	8.9172E-06	2	21374	21374;21419		149.91	71.765	1	653930			2071	1855	1407	1417	2761;2762	2761					-0.023948401733377978
DYATIFNNL	9	Unmodified	_DYATIFNNL_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7615356445312	2	535.761289	1069.50803	0.59102	0.00031665	-0.75862	-0.00040644	-0.16759	-8.9789E-05	535.7613205145784	86.322	0.83378	86.347	85.773	86.607	0.025169					76	31	4	0	0	0	1.0594E-10	1	21221	21221		176.84	98.688	1	754110			2072	1855	1407	1417	2763	2763					-0.023948401733377978
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF	nc|ENSG00000167962|Q86UK7-2|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.1924133300781	3	405.192734	1212.55637	0.38384	0.00015553	-0.34884	-0.00014135	0.034999	1.4181E-05	405.19258757798457	52.198	0.62311	52.198	51.961	52.584	0					43	21	3	0	0	0	0.23216	2	10971	10971;11025		10.151	2.5416	1	201130			2073	4241	1408	1418	2764;2765	2764					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF	nc|ENSG00000167962|Q86UK7-2|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.285400390625	2	607.285463	1212.55637	0.44344	0.00026929	1.1642	0.00070697	1.6076	0.00097627	607.2865046948108	52.175	1.1253	52.175	51.91	53.036	0					49	39	2	0	0	0	0.11936	1	10973	10973		28.234	14.328	1	124380			2074	4241	1408	1418	2766	2766					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF	nc|ENSG00000167962|Q86UK7-2|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.1927490234375	3	405.192734	1212.55637	0.063663	2.5796E-05	-0.030377	-1.2308E-05	0.033286	1.3487E-05	405.19269956459686	52.164	0.441	52.231	51.997	52.438	0.067173					42	17	3	0	0	0	0.11547	1	10818	10818		27.223	15.048	1	183460			2075	4241	1408	1418	2767	2767					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF	nc|ENSG00000167962|Q86UK7-2|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2860107421875	2	607.285463	1212.55637	0.62558	0.00037991	0.59629	0.00036212	1.2219	0.00074203	607.2857237027818	52.161	0.41476	52.228	51.997	52.412	0.067169					25	16	2	0	0	0	0.2546	1	10861	10861		12.241	2.8575	1	112720			2076	4241	1408	1418	2768	2768					-0.041403465334497014
DYCLENKTL	9	Carbamidomethyl (C)	_DYC(Carbamidomethyl (C))LENKTL_	DYC(1)LENKTL		DYC(56)LENKTL		0	1	0		ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2716064453125	2	578.271164	1154.52777	0.36185	0.00020925	-1.0242	-0.00059224	-0.66231	-0.000383	578.2706406437791	61.582	0.93063	61.582	61.218	62.149	0					93	46	3	0	0	0	0.023873	2	13799	13799;13840		55.503	19.376	1	2353600			2077	818	1409	1419	2769;2770	2769	0				-0.043308322248776676
DYCLENKTL	9	Carbamidomethyl (C)	_DYC(Carbamidomethyl (C))LENKTL_	DYC(1)LENKTL		DYC(64)LENKTL		0	1	0		ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7728271484375	2	578.271164	1154.52777	0.3749	0.00021679	-0.86086	-0.00049781	-0.48596	-0.00028102	578.2704687542534	61.429	0.6837	61.503	61.327	62.011	0.073421					87	40	3	0	0	0	0.012041	1	13644	13644		63.961	20.102	1	2369100			2078	818	1409	1419	2771	2771	0				-0.043308322248776676
DYCSHLVRVLF	11	Unmodified	_DYCSHLVRVLF_					0	0	0		ENST00000490210.6_1_18:76873315-76936839:+|nuORF	ENST00000490210.6_1_18:76873315-76936839:+|nuORF	ENST00000490210.6_1_18:76873315-76936839:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.23455810546875	3	451.232424	1350.67544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.602	1	64.671	64.171	65.171	0.068916								0	0	0	0.33121	1	14617	14617		3.8459	0.52627	1				2079	6803	1410	1420	2772	2772					0.014131040997654054
DYDAQRPNF	9	Unmodified	_DYDAQRPNF_					0	0	0			REV__ENSG00000186340|ENST00000617924|THBS2	REV__ENSG00000186340|ENST00000617924|THBS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8271484375	2	563.25162	1124.48869	0.20355	0.00011465	-3.3601	-0.0018926	-3.1565	-0.0017779	563.2503251340437	48.594	0.26626	48.594	48.339	48.605	0					10	8	2	0	0	0	0.259	1	9863	9863		1.6526	0.17072	1	42543	+		2080	10701	1411	1421	2773	2773					-0.06857796464237254
DYDAQRPNF	9	Unmodified	_DYDAQRPNF_					0	0	0			REV__ENSG00000186340|ENST00000617924|THBS2	REV__ENSG00000186340|ENST00000617924|THBS2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	563.25162	1124.48869	0.28872	0.00016262	-4.8698	-0.0027429	-4.5811	-0.0025803	563.7501685105304	48.493	0.30822	48.573	48.386	48.694	0.080032	-0.010512	-0.0012463	NaN	1.6526	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38520	+		2081	10701	1411	1421							-0.06857796464237254
DYDDTMYSY	9	Unmodified	_DYDDTMYSY_					0	0	0		ENST00000560385.2_1_15:79528799-79529129:+|nuORF	ENST00000560385.2_1_15:79528799-79529129:+|nuORF	ENST00000560385.2_1_15:79528799-79529129:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3150024414062	2	586.708062	1171.40157	0.846	0.00049635	0.80688	0.0004734	1.6529	0.00096976	586.708654947025	85.158	0.50567	85.158	84.929	85.435	0					34	17	3	0	0	0	0.25051	1	21109	21109		7.9102	3.5809	1	426230			2082	7146	1412	1422	2774	2774					-0.1772738352080978
DYDGYIFIKE	10	Unmodified	_DYDGYIFIKE_					0	0	0			REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.7979125976562	2	631.800611	1261.58667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.628	1	21.73	21.23	22.23	0.10178								0	0	0	0.33984	1	1809	1809		0.40072	0.050084	1		+		2083	13290	1413	1423	2775	2775					-0.033660326589370015
DYDPLVVKL	9	Unmodified	_DYDPLVVKL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2979125976562	2	531.297507	1060.58046	0.55822	0.00029658	-0.41134	-0.00021854	0.14688	7.8039E-05	531.2971209829103	70.285	0.50479	70.285	70.142	70.647	0					40	18	3	0	0	0	0.0072241	2	16491	16491;16542		75.761	50.362	1	417580			2084	2538	1414	1424	2776;2777	2776					0.05259493900234702
DYDPLVVKL	9	Unmodified	_DYDPLVVKL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2980346679688	2	531.297507	1060.58046	0.59233	0.00031471	0.14458	7.6815E-05	0.73691	0.00039152	531.29753437619	70.223	0.56464	70.283	70.148	70.712	0.060562					35	22	2	0	0	0	0.010235	2	16316	16316;16365		66.457	42.436	1	228430			2085	2538	1414	1424	2778;2779	2778					0.05259493900234702
DYEIGQHQL	9	Unmodified	_DYEIGQHQL_					0	0	0			REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335	REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7251586914062	2	551.76182	1101.50909	0.30091	0.00016603	1.9477	0.0010747	2.2486	0.0012407	551.7624151949148	49.982	0.98132	49.982	49.508	50.489	0					53	34	3	0	0	0	0.25699	1	10362	10362		3.5965	0.31518	1	156580	+		2086	10882	1415	1425	2780	2780					-0.0376062580442067
DYEKAYSLQ	9	Unmodified	_DYEKAYSLQ_					0	0	0		nc|ENSG00000101665|O15105-2|SMAD7;ENST00000545051.2_1_18:46447744-46469079:-|nuORF;nc|ENSG00000101665|O15105-3|SMAD7;ENSG00000101665|ENST00000262158|SMAD7	nc|ENSG00000101665|O15105-2|SMAD7	nc|ENSG00000101665|O15105-2|SMAD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7792358398438	2	558.764029	1115.5135	0.27334	0.00015273	-0.058169	-3.2503E-05	0.21517	0.00012023	558.7636945985626	51.1	0.71059	51.1	50.886	51.596	0					42	23	3	0	0	0	0.2229	1	10605	10605		19.257	0	1	150880			2087	1269	1416	1426	2781	2781					-0.03963161381534519
DYEQPTPW	8	Unmodified	_DYEQPTPW_					0	0	0			REV__ENSG00000178764|ENST00000314393|ZHX2	REV__ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.7431640625	2	518.224539	1034.43453	0.0039729	2.0589E-06	-0.14501	-7.5147E-05	-0.14104	-7.3088E-05	518.2242824994439	39.985	0.20665	40.074	39.905	40.112	0.088562					12	7	2	0	0	0	0.3576	1	7172	7172		6.7232	0	1	36387	+		2088	10459	1417	1427	2782	2782					-0.08131388615811375
DYFFKPVLF	9	Unmodified	_DYFFKPVLF_					0	0	0		ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3114013671875	2	588.310418	1174.60628	0.42425	0.00024959	0.90083	0.00052997	1.3251	0.00077956	588.31086630653	86.831	0.49297	86.858	86.63	87.123	0.027573					79	22	4	0	0	0	0.0045534	2	21351	21351;21396		88.954	88.954	1	3877100			2089	6193	1418	1428	2783;2784	2783					0.025963881425013824
DYFFKPVLF	9	Unmodified	_DYFFKPVLF_					0	0	0		ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	588.310418	1174.60628	0.24387	0.00014347	1.0741	0.0006319	1.318	0.00077538	588.3110183409337	86.868	0.66362	86.868	86.5	87.163	0	0.0051494	9.3311E-05	NaN	88.954	87	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4213900			2090	6193	1418	1428							0.025963881425013824
DYFVDFEWP	9	Unmodified	_DYFVDFEWP_					0	0	0			REV__ENSG00000111701|ENST00000229304|APOBEC1	REV__ENSG00000111701|ENST00000229304|APOBEC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.2616577148438	2	609.261122	1216.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.503	1	84.503	84.003	85.003	0								0	0	0	0.28631	1	20831	20831		1.8442	0.19162	1		+		2091	8693	1419	1429	2785	2785					-0.0919025989317106
DYGIVADLF	9	Unmodified	_DYGIVADLF_					0	0	0		ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENSG00000140374|ENST00000557943|ETFA	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7530212402344	2	506.752933	1011.49131	0.49858	0.00025266	0.010147	5.1418E-06	0.50873	0.0002578	506.7527939631154	98.181	0.62512	98.181	97.887	98.512	0					70	33	3	0	0	0	0.0074933	3	24996	24953;24996;25046		74.929	40.827	1	321390			2092	3008	1420	1430	2786;2787;2788	2787					-0.013973410592939217
DYGIVADLF	9	Unmodified	_DYGIVADLF_					0	0	0		ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENSG00000140374|ENST00000557943|ETFA	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.75274658203125	2	506.752933	1011.49131	0.50315	0.00025497	-0.040619	-2.0584E-05	0.46253	0.00023439	506.75269473838085	98.136	0.5153	98.178	97.916	98.431	0.041931					47	26	2	0	0	0	0.01943	2	24846	24796;24846		58.679	24.576	1	327040			2093	3008	1420	1430	2789;2790	2790					-0.013973410592939217
DYGNGFGGF	9	Unmodified	_DYGNGFGGF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.1897277832031	2	467.1905	932.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.973	1	69.973	69.473	70.473	0								0	0	0	0.19239	1	16397	16397		19.257	14.501	1				2094	4717	1421	1431	2791	2791					-0.10244213475789365
DYHCNWCLF	9	Unmodified	_DYHCNWCLF_					0	0	0			REV__ENST00000340700.9_1_14:88693854-88707099:-|nuORF	REV__ENST00000340700.9_1_14:88693854-88707099:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.3498229980469	3	400.824888	1199.45284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.076	1	24.175	23.675	24.675	0.099739								0	0	0	0.29233	1	2462	2462		0.26902	0.1097	1		+		2095	11458	1422	1432	2792	2792					-0.13891293237111313
DYHEHGSLF	9	Unmodified	_DYHEHGSLF_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.757568359375	2	552.740888	1103.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.42	1	83.441	82.941	83.941	0.021744								0	0	0	0.25361	1	20343	20343		8.5933	1.304	1				2096	1537	1423	1433	2793	2793					-0.08037181492954915
DYHSNVLVAN	10	Unmodified	_DYHSNVLVAN_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2786865234375	2	566.275095	1130.53564	0.021252	1.2034E-05	-2.5425	-0.0014397	-2.5212	-0.0014277	567.2776342799755	105.08	0.78152	105.08	104.77	105.55	0					153	79	3	0	0	0	0.44246	1	27004	27004		6.2058	1.3088	1	148420	+		2097	8179	1424	1434	2794	2794					-0.024409369130808045
DYICIDVTP	9	Unmodified	_DYICIDVTP_					0	0	0		ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.3014526367188	2	519.74425	1037.47395	0.40911	0.00021263	1.5563	0.00080886	1.9654	0.0010215	519.7447699071633	63.955	0.6455	64.026	63.643	64.289	0.071018					27	21	2	0	0	0	0.22912	1	14403	14403		13.042	0	1	253600			2098	4587	1425	1435	2795	2795					-0.04329004656574398
DYIDTIWKI	9	Unmodified	_DYIDTIWKI_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8084106445312	2	583.808239	1165.60193	0.87598	0.0005114	-0.053648	-3.132E-05	0.82233	0.00048008	583.8078384845031	81.929	0.96313	81.929	81.632	82.595	0					80	33	4	0	0	0	0.00015475	1	20040	20040		137.42	97.466	1	1270900			2099	3608	1426	1436	2796	2796					0.025748789289536944
DYIDTIWKI	9	Unmodified	_DYIDTIWKI_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8084716796875	2	583.808239	1165.60193	0.66648	0.0003891	0.38626	0.0002255	1.0527	0.0006146	583.8079279809541	81.956	1.1143	81.978	81.475	82.59	0.021866					98	40	3	0	0	0	0.0040167	1	19872	19872		103.42	69.317	1	1238500			2100	3608	1426	1436	2797	2797					0.025748789289536944
DYIIPYQFW	9	Unmodified	_DYIIPYQFW_					0	0	0			REV__ENST00000543465.5_1_12:7077022-7079730:-|nuORF	REV__ENST00000543465.5_1_12:7077022-7079730:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.8018798828125	2	622.802957	1243.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.277	1	97.318	96.818	97.818	0.040855								0	0	0	0.28631	1	24564	24564		1.8442	0.19162	1		+		2101	11015	1427	1437	2798	2798					-0.020691037254891853
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7720947265625	2	577.832049	1153.64954	0.79382	0.0004587	0.66661	0.00038519	1.4604	0.00084388	577.8320458375376	66.232	0.403	66.232	66.077	66.48	0					22	14	3	0	0	0	0.22179	1	15249	15249		21.59	6.7519	1	163230			2102	1956	1428	1438	2799	2799					0.07886577919794036
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7719116210938	2	577.832049	1153.64954	0.66313	0.00038318	0.54488	0.00031485	1.208	0.00069803	577.8320081335635	66.203	0.33648	66.27	66.14	66.476	0.066872					20	12	2	0	0	0	0.24101	1	15081	15081		15.248	4.4246	1	159870			2103	1956	1428	1438	2800	2800					0.07886577919794036
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(100)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.7969970703125	2	579.796817	1157.57908	0.82151	0.00047631	0.045089	2.6142E-05	0.8666	0.00050245	579.7965971414613	66.735	0.91762	66.735	66.48	67.397	0					74	30	3	0	0	0	0.0040167	4	15421	15375;15421;15428;15475		103.42	53.486	1	845340			2104	982	1429	1439	2801;2802;2803;2804	2802		55			0.006595365398197828
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(100)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.7967529296875	2	579.796817	1157.57908	0.60884	0.000353	0.15249	8.8413E-05	0.76133	0.00044142	579.7968420440297	69.944	1.5211	69.944	69.443	70.964	0					138	55	3	0	0	0	0.00052937	1	16317	16317		103.42	61.58	1	763320			2105	982	1429	1439	2805	2805		55			0.006595365398197828
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(110)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7963256835938	2	579.796817	1157.57908	0.82129	0.00047618	0.35088	0.00020344	1.1722	0.00067962	579.796715209605	66.677	1.0281	66.742	66.474	67.502	0.065071					91	37	4	0	0	0	0.0022565	4	15226	15226;15250;15286;15301		114.2	64.269	1	785840			2106	982	1429	1439	2806;2807;2808;2809	2806		55			0.006595365398197828
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(83)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7971801757812	2	579.796817	1157.57908	0.5647	0.00032741	0.14032	8.1357E-05	0.70502	0.00040877	579.7968495091943	69.795	1.5855	69.855	69.472	71.058	0.060562					149	62	3	0	0	0	0.0047429	1	16175	16175		83.429	41.589	1	641620			2107	982	1429	1439	2810	2810		55			0.006595365398197828
DYIRPRFF	8	Unmodified	_DYIRPRFF_					0	0	0		ENSG00000214511|ENST00000695931|HIGD1C	ENSG00000214511|ENST00000695931|HIGD1C	ENSG00000214511|ENST00000695931|HIGD1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2830810546875	2	557.295633	1112.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.748	1	67.812	67.312	68.312	0.063507								0	0	0	0.38822	1	15569	15569		9.3474	1.4373	1				2108	5568	1430	1440	2811	2811					0.024928689170337748
DYISFAFRL	9	Unmodified	_DYISFAFRL_					0	0	0			REV__ENSG00000188386|ENST00000374806|PPP3R2	REV__ENSG00000188386|ENST00000374806|PPP3R2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.279541015625	2	566.295299	1130.57605	0.40786	0.00023097	0.45128	0.00025556	0.85914	0.00048652	566.2955686133532	70.146	1.0841	70.206	69.78	70.864	0.060562					109	44	3	0	0	0	0.24021	1	16363	16363		13.906	0.86358	1	1068500	+		2109	10768	1431	1441	2812	2812					0.015980294773271453
DYISHFLTF	9	Unmodified	_DYISHFLTF_					0	0	0		nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7861328125	2	571.779482	1141.54441	0.54214	0.00030998	0.81208	0.00046433	1.3542	0.00077431	571.7794295125095	92.534	1.168	92.534	92.243	93.411	0					130	44	5	0	0	0	0.23216	1	23351	23351		14.838	0.43289	1	2313600			2110	1859	1432	1442	2813	2813					-0.02069963276630915
DYISHFLTF	9	Unmodified	_DYISHFLTF_					0	0	0		nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	nc|ENSG00000114841|Q9P2D7-6|DNAH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7859497070312	2	571.779482	1141.54441	0.5206	0.00029767	0.92899	0.00053118	1.4496	0.00082884	571.7794647446112	92.497	1.1332	92.534	92.286	93.419	0.03653					127	44	6	0	0	0	0.26684	1	23203	23203		10.824	1.4408	1	3307700			2111	1859	1432	1442	2814	2814					-0.02069963276630915
DYKESFNTI	9	Unmodified	_DYKESFNTI_					0	0	0		ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;C12orf52-GRHL2|1|fusion	ENSG00000134317|ENST00000324907|GRHL1	ENSG00000134317|ENST00000324907|GRHL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.779296875	2	558.764029	1115.5135	0.45804	0.00025594	0.061279	3.4241E-05	0.51932	0.00029018	558.7638143357259	51.002	0.40183	51.072	50.883	51.285	0.069874					27	15	2	0	0	0	0.23347	1	10455	10455		18.373	3.5348	1	165550			2112	2658	1433	1443	2815	2815					-0.03963161381511782
DYKRLFFRF	9	Unmodified	_DYKRLFFRF_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	431.2360534667969	3	431.236385	1290.68733	0.13948	6.0151E-05	-0.47007	-0.00020271	-0.33059	-0.00014256	431.2360442157954	58.904	0.82705	58.904	58.708	59.535	0					80	30	4	0	0	0	0.2359	1	13077	13077		14.405	11.774	1	689510			2113	4254	1434	1444	2816	2816					0.05361088905260658
DYKRLFFRF	9	Unmodified	_DYKRLFFRF_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	431.236328125	3	431.236385	1290.68733	0.04905	2.1152E-05	-0.38572	-0.00016634	-0.33667	-0.00014518	431.23613195597585	58.787	1.2514	58.857	58.627	59.878	0.070477					99	48	4	0	0	0	0.038996	2	12834	12834;12884		45.74	39.11	1	826620			2114	4254	1434	1444	2817;2818	2817					0.05361088905260658
DYLALFLQP	9	Unmodified	_DYLALFLQP_					0	0	0			REV__ENSG00000125508|ENST00000217188|SRMS	REV__ENSG00000125508|ENST00000217188|SRMS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.29248046875	2	540.292225	1078.5699	0.61157	0.00033043	-0.36387	-0.0001966	0.2477	0.00013383	540.2919321351015	92.523	0.60802	92.523	92.32	92.928	0					46	22	3	0	0	0	0.21603	1	23305	23305		20.454	4.6064	1	149190	+		2115	8973	1435	1445	2819	2819					0.03375511245803864
DYLEGREDYD	10	Unmodified	_DYLEGREDYD_					0	0	0			REV__ENSG00000005020|ENST00000345317|SKAP2	REV__ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.2631225585938	2	637.762214	1273.50988	0.46245	0.00029493	0.19809	0.00012633	0.66054	0.00042127	638.2627851927249	98.408	0.83907	98.408	98.116	98.955	0					180	45	6	0	0	0	0.38912	1	25023	25023		13.042	2.9685	1	1075400	+		2116	7932	1436	1446	2820	2820					-0.11593875946027765
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.5447998046875	3	423.544773	1267.61249	0.39847	0.00016877	-0.31526	-0.00013353	0.083211	3.5243E-05	423.54472431497715	56.874	1.0297	56.874	56.512	57.541	0					88	37	4	0	0	0	0.0045417	3	12432	12384;12432;12487		81.915	55.918	1	1203900			2117	4176	1437	1447	2821;2822;2823	2822					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	423.54486083984375	3	423.544773	1267.61249	0.17656	7.4779E-05	-0.14617	-6.1908E-05	0.030388	1.2871E-05	423.5447562884152	56.786	0.74716	56.853	56.626	57.373	0.066452					71	27	4	0	0	0	0.0045417	2	12228	12228;12278		81.915	50.279	1	1205900			2118	4176	1437	1447	2824;2825	2824					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8132934570312	2	634.813522	1267.61249	0.30483	0.00019351	-0.15569	-9.8834E-05	0.14914	9.4678E-05	634.8130974683244	56.786	0.66595	56.853	56.626	57.292	0.066448					37	23	2	0	0	0	0.0093024	3	12236	12236;12289;12305		69.338	45.548	1	551530			2119	4176	1437	1447	2826;2827;2828	2826					-0.010611384166168136
DYLESIVFI	9	Unmodified	_DYLESIVFI_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7899780273438	2	549.789515	1097.56448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.73	1	103.73	103.23	104.23	0								0	0	0	0.18435	1	26670	26670		20.454	3.5113	1				2120	3452	1438	1448	2829	2829					0.019597876633497435
DYLEWPEYF	9	Unmodified	_DYLEWPEYF_					0	0	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.2740478515625	2	631.274229	1260.53391	0.40876	0.00025804	-0.36488	-0.00023034	0.04388	2.77E-05	631.2738723976144	98.424	1.3615	98.424	98.071	99.433	0					261	82	5	0	0	0	0.0020132	4	25077	24995;25035;25077;25117		115.69	94.155	1	6545000			2121	2422	1439	1449	2830;2831;2832;2833	2832					-0.08593990721715272
DYLEWPEYF	9	Unmodified	_DYLEWPEYF_					0	0	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.2741088867188	2	631.274229	1260.53391	0.53951	0.00034058	-0.50348	-0.00031783	0.036033	2.2747E-05	631.2737606921086	98.35	1.4022	98.392	98.089	99.491	0.041931					256	84	5	0	0	0	0.00022088	3	24926	24845;24889;24926		136.33	114.8	1	4331600			2122	2422	1439	1449	2834;2835;2836	2836					-0.08593990721715272
DYLFKVVLI	9	Unmodified	_DYLFKVVLI_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3341064453125	2	555.333893	1108.65323	0.54767	0.00030414	-0.18945	-0.00010521	0.35822	0.00019893	555.3336896521978	88.546	0.82649	88.546	88.317	89.143	0					87	33	4	0	0	0	0.0050339	3	22044	22044;22084;22135		82.529	50.224	1	1168100			2123	1387	1440	1450	2837;2838;2839	2837					0.10325247693663187
DYLFKVVLI	9	Unmodified	_DYLFKVVLI_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.3340454101562	2	555.333893	1108.65323	0.61676	0.00034251	-0.17452	-9.6916E-05	0.44224	0.00024559	555.3336702828874	88.517	0.94465	88.547	88.277	89.222	0.030037					90	38	4	0	0	0	0.0050339	3	21906	21862;21906;21959		82.529	42.572	1	1288800			2124	1387	1440	1450	2840;2841;2842	2841					0.10325247693663187
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.8373413085938	2	640.837331	1279.66011	0.28811	0.00018463	0.47162	0.00030223	0.75973	0.00048686	640.8373110826968	62.228	0.74817	62.228	61.974	62.722	0					79	27	4	0	0	0	0.048027	2	14026	14026;14075		43.772	19.219	1	528000			2125	2861	1441	1451	2843;2844	2843					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.30267333984375	3	427.560646	1279.66011	0.52897	0.00022617	-0.57225	-0.00024467	-0.043278	-1.8504E-05	427.56035004775333	62.232	0.90083	62.232	62.041	62.941	0					87	32	4	0	0	0	0.24819	1	14186	14186		10.8	3.6978	1	570250			2126	2861	1441	1451	2845	2845					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3389282226562	2	640.837331	1279.66011	0.25569	0.00016386	0.41791	0.00026781	0.6736	0.00043167	640.8374388746076	62.181	0.70645	62.255	62.011	62.717	0.073421					64	24	4	0	0	0	0.034936	2	13877	13877;13973		47.594	13.193	1	549960			2127	2861	1441	1451	2846;2847	2846					0.03146560574236901
DYLRWVQTL	9	Unmodified	_DYLRWVQTL_					0	0	0		CON__Q03247;ENSG00000130203|ENST00000252486|APOE	CON__Q03247	CON__Q03247	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8221435546875	2	597.319306	1192.62406	0.28482	0.00017013	0.024443	1.46E-05	0.30926	0.00018473	597.8211557592758	77.673	0.24657	77.707	77.522	77.768	0.034485					11	7	2	0	0	0	0.24942	1	18609	18609		10.151	1.1743	1	155340		+	2128	226	1442	1452	2848	2848					0.03545103397368621
DYLSAMGFVL	10	Unmodified	_DYLSAMGFVL_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2717895507812	2	558.275718	1114.53688	0.42348	0.00023642	-3.1314	-0.0017482	-2.708	-0.0015118	558.2733778172412	61.59	0.18937	61.59	61.525	61.714	0					24	15	2	0	0	0	0.093158	1	13839	13839		46.021	7.8454	1	806310	+		2129	10300	1443	1453	2849	2849					-0.01580438868541023
DYLSAMGFVL	10	Unmodified	_DYLSAMGFVL_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2742309570312	2	558.275718	1114.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.522	1	61.522	61.022	62.022	0								0	0	0	0.10247	1	13821	13821		46.021	7.8454	1		+		2130	10300	1443	1453	2850	2850					-0.01580438868541023
DYLSYHELQ	9	Unmodified	_DYLSYHELQ_					0	0	0		ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2890625	2	584.269478	1166.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.325	1	70.385	69.885	70.885	0.060562								0	0	0	0.21527	1	16352	16352		15.847	1.0089	1				2131	3113	1444	1454	2851	2851					-0.052197590072410094
DYLWQRNLRQF	11	Unmodified	_DYLWQRNLRQF_					0	0	0		nc|ENSG00000102890|Q96BJ8-3|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-2|ELMO3	nc|ENSG00000102890|Q96BJ8-3|ELMO3	nc|ENSG00000102890|Q96BJ8-3|ELMO3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2509155273438	3	513.600275	1537.779	0.42281	0.00021716	0.06918	3.5531E-05	0.49199	0.00025269	513.600174371429	62.477	0.35674	62.477	62.365	62.722	0					25	12	3	0	0	0	0.30953	1	14143	14143		15.538	11.946	1	121040			2132	1335	1445	1455	2852	2852					0.03161727531778524
DYLWQRNLRQF	11	Unmodified	_DYLWQRNLRQF_					0	0	0		nc|ENSG00000102890|Q96BJ8-3|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-2|ELMO3	nc|ENSG00000102890|Q96BJ8-3|ELMO3	nc|ENSG00000102890|Q96BJ8-3|ELMO3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2510375976562	3	513.600275	1537.779	0.37205	0.00019109	-0.38975	-0.00020018	-0.017702	-9.0917E-06	513.6001597461863	62.386	0.32419	62.459	62.335	62.659	0.072701					14	10	2	0	0	0	0.30995	1	13944	13944		12.228	9.9749	1	114980			2133	1335	1445	1455	2853	2853					0.03161727531778524
DYLYFRKLY	9	Unmodified	_DYLYFRKLY_					0	0	0			REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF	REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.5605773925781	3	427.560646	1279.66011	0.52897	0.00022617	-0.57225	-0.00024467	-0.043278	-1.8504E-05	427.56035004775333	62.232	0.90083	62.232	62.041	62.941	0					87	32	4	0	0	0	0.083124	1	14038	14038		33.445	0	1	570250	+		2134	9281	1446	1456	2854	2854					0.03146560574236901
DYLYFRKLY	9	Unmodified	_DYLYFRKLY_					0	0	0			REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF	REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.5604248046875	3	427.560646	1279.66011	0.18081	7.7307E-05	-0.32978	-0.000141	-0.14897	-6.3693E-05	427.5604465559877	62.118	0.92363	62.191	62.011	62.934	0.073418					77	32	4	0	0	0	0.10833	1	13870	13870		34.932	0	1	759920	+		2135	9281	1446	1456	2855	2855					0.03146560574236901
DYLYFRKLY	9	Unmodified	_DYLYFRKLY_					0	0	0			REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF	REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.302734375	3	427.560646	1279.66011	0.18081	7.7307E-05	-0.32978	-0.000141	-0.14897	-6.3693E-05	427.5604465559877	62.118	0.92363	62.191	62.011	62.934	0.073418					77	32	4	0	0	0	0.25259	1	13998	13998		7.609	0	1	759920	+		2136	9281	1446	1456	2856	2856					0.03146560574236901
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(100)KTTSNF	0	0	1		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7422485351562	2	561.742239	1121.46993	0.046542	2.6145E-05	0.30132	0.00016926	0.34786	0.00019541	561.7423012209483	34.133	0.92125	34.133	33.933	34.854	0					81	36	3	0	0	0	0.0042454	1	5518	5518		100.71	84.861	1	238320			2137	4089	1447	1457	2857	2857		248			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(65)KTTSNF	0	0	1		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7421264648438	2	561.742239	1121.46993	0.13415	7.5359E-05	0.1724	9.6842E-05	0.30655	0.0001722	561.742303054514	34.097	0.82795	34.173	33.948	34.776	0.076244					68	35	3	0	0	0	0.01073	1	5377	5377		64.927	54.103	1	199730			2138	4089	1447	1457	2858	2858		248			-0.08595094150291516
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.744873046875	2	553.744782	1105.47501	-0.023685	-1.3116E-05	0.24698	0.00013676	0.22329	0.00012365	553.7450800034603	44.302	0.49036	44.302	44.116	44.606	0					31	16	3	0	0	0	0.031932	1	8600	8600		49.742	39.668	1	98838			2139	4089	1447	1458	2859	2859					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8317260742188	2	553.744782	1105.47501	0.21674	0.00012002	-0.14534	-8.0484E-05	0.071392	3.9533E-05	553.744979881311	44.225	0.34863	44.314	44.132	44.48	0.088924					24	11	3	0	0	0	0.16956	1	8447	8447		34.222	20.714	1	87607			2140	4089	1447	1458	2860	2860					-0.07350790287682685
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		nc|ENSG00000123505|P17707-2|AMD1;ENSG00000123505|ENST00000368885|AMD1	nc|ENSG00000123505|P17707-2|AMD1	nc|ENSG00000123505|P17707-2|AMD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2560424804688	2	570.25584	1138.49713	0.28842	0.00016447	0.013196	7.5249E-06	0.30161	0.000172	570.2558201759643	96.119	1.0195	96.119	95.852	96.872	0					161	50	5	0	0	0	1.5492E-17	2	24376	24333;24376		201.57	201.57	1	4975600			2141	2221	1448	1459	2861;2862	2862					-0.06658242547609916
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		nc|ENSG00000123505|P17707-2|AMD1;ENSG00000123505|ENST00000368885|AMD1	nc|ENSG00000123505|P17707-2|AMD1	nc|ENSG00000123505|P17707-2|AMD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2560424804688	2	570.25584	1138.49713	0.32053	0.00018278	-0.031441	-1.7929E-05	0.28909	0.00016486	570.2557884573521	96.074	1.1624	96.114	95.839	97.001	0.039772					169	61	5	0	0	0	5.7707E-13	1	24170	24170		187.3	151.17	1	4061700			2142	2221	1448	1459	2863	2863					-0.06658242547609916
DYNSQIQQV	9	Unmodified	_DYNSQIQQV_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.75927734375	2	547.759278	1093.504	0.48914	0.00026793	-1.4808	-0.00081113	-0.99167	-0.0005432	547.7582453196023	91.651	0.57885	91.651	91.348	91.927	0					86	21	6	0	0	0	0.28919	1	22974	22974		8.1555	2.4237	1	686910	+		2143	9306	1449	1460	2864	2864					-0.03900929667042874
DYPKFGLLDQD	11	Unmodified	_DYPKFGLLDQD_					0	0	0		ENST00000524263.5_1_8:37968258-37975025:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000524263.5_1_8:37968258-37975025:+|nuORF	ENST00000524263.5_1_8:37968258-37975025:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.52911376953125	3	437.546954	1309.61903	0.45066	0.00019719	-1.36	-0.00059507	-0.90934	-0.00039788	437.5457654594698	37.794	0.079693	37.794	37.758	37.837	0					4	2	2	0	0	0	0.311	1	6632	6632		0.50596	0	1	10407			2144	2438	1450	1461	2865	2865					-0.023392452558937293
DYPRYLFEI	9	Unmodified	_DYPRYLFEI_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.305908203125	2	608.305864	1214.59717	0.732	0.00044528	-0.23675	-0.00014402	0.49525	0.00030126	608.3056143388559	79.572	1.2282	79.572	79.342	80.571	0					90	42	4	0	0	0	0.00648	4	19309	19309;19354;19408;19423		78.06	59.914	1	1446000			2145	380	1451	1462	2866;2867;2868;2869	2866					-0.0015400521381252474
DYPRYLFEI	9	Unmodified	_DYPRYLFEI_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.3060302734375	2	608.305864	1214.59717	0.54776	0.00033321	-0.1513	-9.2034E-05	0.39646	0.00024117	608.3056425179415	79.546	0.71598	79.572	79.362	80.078	0.026436					75	25	5	0	0	0	0.0052326	3	19185	19142;19185;19233		81.915	81.915	1	1494100			2146	380	1451	1462	2870;2871;2872	2871					-0.0015400521381252474
DYPSRWTAI	9	Unmodified	_DYPSRWTAI_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.239990234375	2	554.774731	1107.53491	0.62757	0.00034816	-0.64138	-0.00035582	-0.013811	-7.6618E-06	554.7746529402226	57.761	0.47326	57.761	57.408	57.881	0					26	16	2	0	0	0	0.24791	1	12621	12621		10.074	2.1638	1	55964			2147	5516	1452	1463	2873	2873					-0.014557315621459566
DYRPGACFNII	11	Unmodified	_DYRPGACFNII_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.5412292480469	3	423.541257	1267.60194	0.088737	3.7584E-05	0.48734	0.00020641	0.57608	0.00024399	423.54140767470176	58.637	0.80795	58.637	58.386	59.194	0					54	28	3	0	0	0	0.32422	1	13006	13006		8.7518	0.80638	1	177730			2148	2387	1453	1464	2874	2874					-0.021154443426667058
DYRYRVSW	8	Unmodified	_DYRYRVSW_					0	0	0			REV__ENSG00000149256|ENST00000278550|TENM4	REV__ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2693481445312	2	572.780348	1143.54614	0.34441	0.00019727	-0.98522	-0.00056432	-0.64081	-0.00036704	572.7798020079672	62.307	0.76592	62.307	61.956	62.722	0					83	28	4	0	0	0	0.52502	1	14125	14125		9.3474	2.6243	1	940100	+		2149	9608	1454	1465	2875	2875					-0.01988909468013844
DYSDTHVLAI	10	Unmodified	_DYSDTHVLAI_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2772827148438	2	567.277303	1132.54005	0.15586	8.8415E-05	-0.49591	-0.00028132	-0.34005	-0.0001929	567.2768310764259	58.93	1.1444	59	58.184	59.328	0.070477					79	42	2	0	0	0	0.16299	2	12877	12877;12924		37.974	11.633	1	327860	+		2150	10929	1455	1466	2876;2877	2876					-0.020914724902013404
DYSDTHVLAI	10	Unmodified	_DYSDTHVLAI_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7748413085938	2	567.277303	1132.54005	0.15586	8.8415E-05	-0.49591	-0.00028132	-0.34005	-0.0001929	567.2768310764259	58.93	1.1444	59	58.184	59.328	0.070477					79	42	2	0	0	0	0.30896	1	12893	12893		18.146	5.1039	1	327860	+		2151	10929	1455	1466	2878	2878					-0.020914724902013404
DYSFVPEKY	9	Unmodified	_DYSFVPEKY_					0	0	0		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2686767578125	2	574.268947	1146.52334	0.29851	0.00017142	-0.53887	-0.00030946	-0.24037	-0.00013804	574.268448723481	61.585	1.9484	61.585	60.834	62.783	0					264	83	4	0	0	0	0.091044	1	13827	13827		34.402	4.5611	1	9751300			2152	1406	1456	1467	2879	2879					-0.044059733761287134
DYSKVFNFI	9	Unmodified	_DYSKVFNFI_					0	0	0		tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7858276367188	2	566.787307	1131.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.13	1	114.14	113.64	114.64	0.013336								0	0	0	0.27427	1	29066	29066		4.3292	0.38484	1				2153	13667	1457	1468	2880	2880					-0.00045676759555135504
DYSKWTLEN	9	Unmodified	_DYSKWTLEN_					0	0	0			REV__ENST00000264501.8_2_4:123274113-123274284:+|nuORF	REV__ENST00000264501.8_2_4:123274113-123274284:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7868041992188	2	578.269478	1154.5244	0.41578	0.00024043	1.9564	0.0011313	2.3721	0.0013717	578.7724615390745	62.026	0.19733	62.099	62.011	62.208	0.073421					12	6	3	0	0	0	0.24929	1	13819	13819		9.3831	0	1	93858	+		2154	11253	1458	1469	2881	2881					-0.046677590072249586
DYSKYPFEV	9	Unmodified	_DYSKYPFEV_					0	0	0		ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2688598632812	2	574.268947	1146.52334	0.29851	0.00017142	-0.53887	-0.00030946	-0.24037	-0.00013804	574.268448723481	61.585	1.9484	61.585	60.834	62.783	0					264	83	4	0	0	0	0.14091	1	13948	13948		25.399	0	1	9751300			2155	3694	1459	1470	2882	2882					-0.044059733761287134
DYSKYPFEV	9	Unmodified	_DYSKYPFEV_					0	0	0		ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2684936523438	2	574.268947	1146.52334	0.2824	0.00016218	-0.46959	-0.00026967	-0.18719	-0.0001075	574.268456016587	61.471	1.6382	61.545	61.11	62.748	0.073421					217	73	4	0	0	0	0.11547	2	13712	13712;13837		29.082	0	1	6966000			2156	3694	1459	1470	2883;2884	2883					-0.044059733761287134
DYSLAVCIHI	10	Unmodified	_DYSLAVCIHI_					0	0	0		ARRDC4|p.Y296C|1|0.2|ENSG00000140450|chr15:97969887-97969887|A/G|missense_variant	ARRDC4|p.Y296C|1|0.2|ENSG00000140450|chr15:97969887-97969887|A/G|missense_variant	ARRDC4|p.Y296C|1|0.2|ENSG00000140450|chr15:97969887-97969887|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2789916992188	2	567.286617	1132.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.896	1	70.954	70.454	71.454	0.058578								0	0	0	0.2369	1	16525	16525		25.399	6.1423	1				2157	52	1460	1471	2885	2885					-0.0022963411995533534
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.280029296875	2	567.279315	1132.54408	0.25702	0.0001458	0.042219	2.395E-05	0.29924	0.00016975	567.2797426752816	61.582	2.1938	61.582	60.558	62.752	0					366	78	6	0	0	0	1.2994E-17	8	13849	13769;13811;13849;13894;13943;13985;14029;14071		203.64	161.8	1	332540000		+	2158	214	1461	1472	2886;2887;2888;2889;2890;2891;2892;2893	2888					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2791137695312	2	567.279315	1132.54408	0.42521	0.00024121	-0.29725	-0.00016863	0.12796	7.2588E-05	567.2793992162383	63.047	8.5501	63.047	62.631	71.181	0					767	315	5	0	0	0	0.00648	16	14891	14891;15145;15225;15326;15532;15576;15625;15667;15723;15771;15828;16102;16218;16267;16541;16592		78.06	33.969	1	49290000		+	2159	214	1461	1472	2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909	2894					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2796630859375	2	567.279315	1132.54408	0.089221	5.0613E-05	-1.0145	-0.00057551	-0.92529	-0.0005249	567.2785920452544	71.81	1.9868	71.81	71.158	73.145	0					121	69	2	0	0	0	0.081383	1	16982	16982		36.506	16.053	1	260970		+	2160	214	1461	1472	2910	2910					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2798461914062	2	567.279315	1132.54408	0.24283	0.00013775	0.014743	8.3634E-06	0.25758	0.00014612	567.2797716470394	61.431	2.2781	61.505	60.629	62.907	0.073421					384	89	6	0	0	0	1.2994E-17	7	13735	13608;13648;13689;13735;13778;13818;13865		203.64	159.78	1	301790000		+	2161	214	1461	1472	2911;2912;2913;2914;2915;2916;2917	2914					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2796020507812	2	567.279315	1132.54408	0.37152	0.00021075	-0.1677	-9.5134E-05	0.20382	0.00011562	567.27943925011	62.977	4.7916	63.05	62.687	67.479	0.072701					557	181	5	0	0	0	0.0045978	7	15464	14870;14985;15045;15174;15353;15410;15464		87.258	41.57	1	39302000		+	2162	214	1461	1472	2918;2919;2920;2921;2922;2923;2924	2924					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.27880859375	2	567.279315	1132.54408	0.34389	0.00019508	-0.2742	-0.00015555	0.069697	3.9538E-05	567.2791197725873	69.141	3.4456	69.203	67.468	70.914	0.062126					244	132	3	0	0	0	0.010553	6	15962	15910;15962;16024;16081;16223;16420		65.474	28.967	1	698930		+	2163	214	1461	1472	2925;2926;2927;2928;2929;2930	2926					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2780151367188	2	567.279315	1132.54408	0.35132	0.00019929	-0.94876	-0.00053821	-0.59744	-0.00033892	567.2786021708218	71.143	1.8343	71.202	70.862	72.697	0.058578					111	65	3	0	0	0	0.17428	1	16791	16791		21.537	6.6987	1	331600		+	2164	214	1461	1472	2931	2931					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8055419921875	2	567.279315	1132.54408	0.32828	0.00018623	-1.7659	-0.0010018	-1.4376	-0.00081554	567.2781585228505	76.46	0.81488	76.499	76.231	77.046	0.03923					43	29	2	0	0	0	0.21599	1	18157	18157		22.658	8.0764	1	260290		+	2165	214	1461	1472	2932	2932					-0.016893829964601537
DYSYGFAYI	9	Unmodified	_DYSYGFAYI_					0	0	0		ENSG00000109099|ENST00000312280|PMP22;ENST00000494511.5_1_17:15134236-15168564:-|nuORF;ENST00000395936.5_2_17:15134236-15138539:-|nuORF	ENSG00000109099|ENST00000312280|PMP22	ENSG00000109099|ENST00000312280|PMP22	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7503051757812	2	549.742565	1097.47058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.372	1	62.445	61.945	62.945	0.072701								0	0	0	0.16627	1	13941	13941		23.148	0.41214	1				2166	1622	1462	1473	2933	2933					-0.0742593143893373
DYSYVNDIF	9	Unmodified	_DYSYVNDIF_					0	0	0		SLC7A8|p.K111N|1|0.1|ENSG00000092068|chr14:23166359-23166359|C/G|missense_variant	SLC7A8|p.K111N|1|0.1|ENSG00000092068|chr14:23166359-23166359|C/G|missense_variant	SLC7A8|p.K111N|1|0.1|ENSG00000092068|chr14:23166359-23166359|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8058471679688	2	568.250754	1134.48696	0.35562	0.00020208	2.9751	0.0016906	3.3307	0.0018927	568.2523613430451	76.972	0.36482	77.011	76.758	77.123	0.039001					18	12	2	0	0	0	0.25051	1	18341	18341		7.9102	1.187	1	91355			2167	13369	1463	1474	2934	2934					-0.07490850272847638
DYTIGFGKF	9	Unmodified	_DYTIGFGKF_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.26123046875	2	524.260925	1046.5073	0.43729	0.00022925	-3.463	-0.0018155	-3.0257	-0.0015863	524.7597875575399	68.778	0.72376	68.778	68.408	69.132	0					76	26	4	0	0	0	0.010235	2	16047	16047;16056		66.457	43.308	1	230260			2168	2575	1464	1475	2935;2936	2935					-0.01409634822357475
DYTIGFGKF	9	Unmodified	_DYTIGFGKF_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2611083984375	2	524.260925	1046.5073	0.19338	0.00010138	-3.6522	-0.0019147	-3.4588	-0.0018133	524.7596837716228	68.71	0.62923	68.772	68.452	69.082	0.062126					71	23	4	0	0	0	0.0046402	2	15836	15836;15874		85.642	60.968	1	273230			2169	2575	1464	1475	2937;2938	2937					-0.01409634822357475
DYTKRFATL	9	Unmodified	_DYTKRFATL_					0	0	0			REV__nc|ENSG00000163636|Q15008-3|PSMD6	REV__nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2821655273438	2	557.798206	1113.58186	0.49638	0.00027688	1.361	0.00075918	1.8574	0.0010361	557.7990956575429	67.819	0.17868	67.819	67.794	67.973	0					9	6	2	0	0	0	0.25281	1	15740	15740		6.7232	0.51738	1	87953	+		2170	9949	1465	1476	2939	2939					0.029611279890104925
DYTPYLKFT	9	Unmodified	_DYTPYLKFT_					0	0	0		nc|ENSG00000108309|Q59EK9-2|RUNDC3A;nc|ENSG00000108309|Q59EK9-3|RUNDC3A;ENSG00000108309|ENST00000426726|RUNDC3A;ENST00000593079.1_1_17:42392127-42392978:+|nuORF;ENST00000587483.5_1_17:42391821-42393770:+|nuORF;nc|ENSG00000108309|Q59EK9-4|RUNDC3A;ENST00000590834.5_1_17:42386140-42393891:+|nuORF	nc|ENSG00000108309|Q59EK9-2|RUNDC3A	nc|ENSG00000108309|Q59EK9-2|RUNDC3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2687377929688	2	574.28714	1146.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.389	1	62.461	61.961	62.961	0.072701								0	0	0	0.25287	1	13946	13946		8.7454	1.6437	1				2171	1585	1466	1477	2940	2940					-0.00769096479439213
DYTQTSDPGRH	11	Unmodified	_DYTQTSDPGRH_					0	0	0		ENSG00000137824|ENST00000338376|RMDN3	ENSG00000137824|ENST00000338376|RMDN3	ENSG00000137824|ENST00000338376|RMDN3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.19183349609375	3	426.189941	1275.54799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.905	1	86.905	86.405	87.405	0								0	0	0	0.32962	1	21566	21566		4.4062	1.9077	1				2172	2872	1467	1478	2941	2941					-0.07875945240698456
DYTSSVQGTGL	11	Unmodified	_DYTSSVQGTGL_					0	0	0			REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2656860351562	2	564.264393	1126.51423	0.34339	0.00019376	0.19705	0.00011119	0.54044	0.00030495	564.2643459820431	53.508	0.68103	53.508	53.361	54.042	0					37	25	2	0	0	0	0.2498	1	11376	11376		23.79	2.2528	1	139510	+		2173	11027	1468	1479	2942	2942					-0.04396366732453316
DYTSSVQGTGL	11	Unmodified	_DYTSSVQGTGL_					0	0	0			REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	564.264393	1126.51423	0.43966	0.00024808	0.0075866	4.2808E-06	0.44724	0.00025236	564.2642028586713	53.552	0.54049	53.617	53.432	53.973	0.06543	0.054797	-8.4631E-05	NaN	23.79	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127540	+		2174	11027	1468	1479							-0.04396366732453316
DYTSVMHY	8	Unmodified	_DYTSVMHY_					0	0	0		ENSG00000141434|ENST00000269202|MEP1B	ENSG00000141434|ENST00000269202|MEP1B	ENSG00000141434|ENST00000269202|MEP1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2126770019531	2	508.213117	1014.41168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.703	1	31.777	31.277	32.277	0.073782								0	0	0	0.38822	1	4680	4680		5.7604	0	1				2175	3056	1469	1480	2943	2943					-0.09494731004929235
DYTTCFSSTNF	11	Unmodified	_DYTTCFSSTNF_					0	0	0		TTC3|p.R863T|1|0.17|ENSG00000182670|chr21:37153125-37153125|G/C|missense_variant	TTC3|p.R863T|1|0.17|ENSG00000182670|chr21:37153125-37153125|G/C|missense_variant	TTC3|p.R863T|1|0.17|ENSG00000182670|chr21:37153125-37153125|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.76708984375	2	643.255711	1284.49687	0.45245	0.00029104	-4.1725	-0.002684	-3.7201	-0.0023929	643.2527054356191	98.364	0.33344	98.406	98.27	98.603	0.041939					23	17	2	0	0	0	0.3104	1	24938	24938		7.1017	1.3699	1	73925			2176	13757	1470	1481	2944	2944					-0.13400030329785295
DYTTCFSSTNF	11	Unmodified	_DYTTCFSSTNF_					0	0	0		TTC3|p.R863T|1|0.17|ENSG00000182670|chr21:37153125-37153125|G/C|missense_variant	TTC3|p.R863T|1|0.17|ENSG00000182670|chr21:37153125-37153125|G/C|missense_variant	TTC3|p.R863T|1|0.17|ENSG00000182670|chr21:37153125-37153125|G/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	643.255711	1284.49687	0.49999	0.00032162	-3.9538	-0.0025433	-3.4538	-0.0022217	643.2532103038568	98.422	0.26553	98.422	98.246	98.512	0	0.0081836	0.00013238	NaN	7.1017	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104080			2177	13757	1470	1481							-0.13400030329785295
DYTTWTALL	9	Unmodified	_DYTTWTALL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2716674804688	2	542.27149	1082.52843	0.44147	0.0002394	-0.089376	-4.8466E-05	0.3521	0.00019093	542.2714173761582	96.591	0.58479	96.591	96.38	96.965	0					59	26	3	0	0	0	1.7467E-05	2	24504	24504;24549		141.83	111.6	1	845800			2178	842	1471	1482	2945;2946	2945					-0.009536695135238915
DYTTWTALL	9	Unmodified	_DYTTWTALL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2716064453125	2	542.27149	1082.52843	0.52086	0.00028245	-0.20117	-0.00010909	0.31969	0.00017336	542.2713251558264	96.656	0.50241	96.696	96.437	96.939	0.039772					62	25	3	0	0	0	1.7467E-05	3	24339	24339;24381;24424		141.83	111.6	1	630240			2179	842	1471	1482	2947;2948;2949	2947					-0.009536695135238915
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2852172851562	2	549.284931	1096.55531	0.574	0.00031529	-0.0079132	-4.3466E-06	0.56608	0.00031094	549.2848704862807	69.178	1.1076	69.178	68.911	70.018	0					108	38	4	0	0	0	0.00061878	4	16180	16132;16180;16235;16352		129.77	82.024	1	3425600			2180	1080	1472	1483	2950;2951;2952;2953	2951					0.010894390976773138
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2852783203125	2	549.284931	1096.55531	0.30153	0.00016562	0.26024	0.00014295	0.56177	0.00030857	549.2850670328634	69.144	1.2479	69.206	68.926	70.174	0.062119					111	48	4	0	0	0	0.0028522	5	15998	15954;15998;16044;16088;16141		110.55	62.804	1	2606300			2181	1080	1472	1483	2954;2955;2956;2957;2958	2955					0.010894390976773138
DYVLFDVF	8	Unmodified	_DYVLFDVF_					0	0	0			REV__ENSG00000134184|ENST00000309851|GSTM1	REV__ENSG00000134184|ENST00000309851|GSTM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.27191162109375	2	509.250026	1016.4855	-0.13299	-6.7723E-05	0.1606	8.1783E-05	0.027609	1.406E-05	509.25011885855946	28.907	0.43494	28.985	28.807	29.242	0.078287					44	31	2	0	0	0	0.3576	1	3856	3856		4.756	0.42677	1	31715	+		2182	9163	1473	1484	2959	2959					-0.022084395709498494
DYVRRKFR	8	Unmodified	_DYVRRKFR_					0	0	0		nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.3259887695312	2	570.325257	1138.63596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.604	1	22.706	22.206	23.206	0.10178								0	0	0	0.38822	1	2070	2070		0.69038	0	1				2183	3102	1474	1485	2960	2960					0.07218764931235455
DYVSIINYL	9	Unmodified	_DYVSIINYL_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2874755859375	2	550.28714	1098.55973	0.5789	0.00031856	0.056644	3.1171E-05	0.63555	0.00034973	550.2872159411066	97.168	0.3635	97.168	96.998	97.361	0					29	17	2	0	0	0	0.10543	2	24713	24667;24713		31.268	8.5321	1	113210			2184	5052	1475	1486	2961;2962	2962					0.014389035205795153
DYVSIINYL	9	Unmodified	_DYVSIINYL_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2767333984375	2	550.28714	1098.55973	0.64672	0.00035588	-0.26518	-0.00014592	0.38155	0.00020996	550.2870486192534	97.167	0.382	97.207	97.017	97.399	0.040848					24	17	2	0	0	0	0.023873	3	24519	24512;24519;24558		55.503	21.101	1	83045			2185	5052	1475	1486	2963;2964;2965	2964					0.014389035205795153
DYVVQAAFL	9	Unmodified	_DYVVQAAFL_					0	0	0			REV__ITPR2|p.R2517Q|1|0.24|ENSG00000123104|chr12:26399022-26399022|C/T|missense_variant	REV__ITPR2|p.R2517Q|1|0.24|ENSG00000123104|chr12:26399022-26399022|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2868041992188	2	513.26875	1024.52295	0.21057	0.00010808	-1.6104	-0.00082657	-1.3998	-0.00071849	513.7682123813626	60.068	0.13757	60.141	60.044	60.182	0.072338					5	4	2	0	0	0	0.31136	1	13245	13245		5.2307	0.47466	1	33106	+		2186	12684	1476	1487	2966	2966					0.011666516946661432
DYVVQAAFL	9	Unmodified	_DYVVQAAFL_					0	0	0			REV__ITPR2|p.R2517Q|1|0.24|ENSG00000123104|chr12:26399022-26399022|C/T|missense_variant	REV__ITPR2|p.R2517Q|1|0.24|ENSG00000123104|chr12:26399022-26399022|C/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	513.26875	1024.52295	0.37868	0.00019436	-4.5555	-0.0023382	-4.1768	-0.0021438	513.7675059283567	59.843	0.10952	59.843	59.758	59.867	0	-0.14901	-0.00063289	NaN	5.2307	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76707	+		2187	12684	1476	1487							0.011666516946661432
DYVVQAAFL	9	Unmodified	_DYVVQAAFL_					0	0	0			REV__ITPR2|p.R2517Q|1|0.24|ENSG00000123104|chr12:26399022-26399022|C/T|missense_variant	REV__ITPR2|p.R2517Q|1|0.24|ENSG00000123104|chr12:26399022-26399022|C/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	513.26875	1024.52295	0.21057	0.00010808	-1.6104	-0.00082657	-1.3998	-0.00071849	513.7682123813626	60.068	0.13757	60.141	60.044	60.182	0.072338	0.14901	0.0023903	NaN	5.2307	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33106	+		2188	12684	1476	1487							0.011666516946661432
DYYKWTQYL	9	Unmodified	_DYYKWTQYL_					0	0	0		ENSG00000011376|ENST00000645846|LARS2	ENSG00000011376|ENST00000645846|LARS2	ENSG00000011376|ENST00000645846|LARS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.3037109375	2	640.303321	1278.59209	0.26845	0.00017189	0.27674	0.0001772	0.54518	0.00034908	640.3038030727869	73.671	0.36658	73.724	73.57	73.937	0.052574					23	13	2	0	0	0	0.32831	1	17385	17385		2.9952	0	1	108450			2189	430	1477	1488	2967	2967					-0.03606309076417347
DYYKWTQYL	9	Unmodified	_DYYKWTQYL_					0	0	0		ENSG00000011376|ENST00000645846|LARS2	ENSG00000011376|ENST00000645846|LARS2	ENSG00000011376|ENST00000645846|LARS2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	640.303321	1278.59209	0.046101	2.9519E-05	0.59614	0.00038171	0.64224	0.00041123	640.3038422171797	73.689	0.35068	73.689	73.598	73.949	0	-0.017154	0.00011966	NaN	2.9952	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114780			2190	430	1477	1488							-0.03606309076417347
DYYQTYDR	8	Unmodified	_DYYQTYDR_					0	0	0			REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2390747070312	2	562.238178	1122.4618	0.58127	0.00032681	1.3555	0.00076214	1.9368	0.001089	562.2388073980078	99.414	0.46553	99.456	99.177	99.643	0.042831					56	29	3	0	0	0	0.54081	1	25162	25162		0.79363	0.10326	1	142410	+		2191	9646	1478	1489	2968	2968					-0.09452905075431772
EAAAIIAQR	9	Unmodified	_EAAAIIAQR_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7717590332031	2	471.771991	941.529429	-0.25426	-0.00011995	0.20986	9.9005E-05	-0.044403	-2.0948E-05	471.77199406416076	33.434	0.43956	33.434	33.248	33.688	0					38	15	3	0	0	0	0.047633	1	5324	5324		43.858	7.7313	1	102600			2192	1816	1479	1490	2969	2969					0.05632589646040742
EAAAIIAQR	9	Unmodified	_EAAAIIAQR_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7720642089844	2	471.771991	941.529429	-0.27662	-0.0001305	0.37004	0.00017457	0.09342	4.4073E-05	471.7719754082693	33.34	0.50226	33.414	33.262	33.765	0.074322					36	19	2	0	0	0	0.19398	1	5186	5186		19.257	3.4098	1	83898			2193	1816	1479	1490	2970	2970					0.05632589646040742
EAAATEIRR	9	Unmodified	_EAAATEIRR_					0	0	0		nc|ENSG00000175029|P56545-3|CTBP2;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	nc|ENSG00000175029|P56545-3|CTBP2	nc|ENSG00000175029|P56545-3|CTBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7776184082031	2	508.777805	1015.54106	0.077637	3.95E-05	-0.12655	-6.4387E-05	-0.048915	-2.4887E-05	508.7776478379032	20.27	0.2288	20.369	20.256	20.485	0.099499					39	22	2	0	0	0	0.2125	1	1467	1467		17.113	4.0704	1	38050			2194	7561	1480	1491	2971	2971					0.03390786669388035
EAAEKEQEL	9	Unmodified	_EAAEKEQEL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7531127929688	2	523.753661	1045.49277	-0.23534	-0.00012326	-0.23991	-0.00012565	-0.47525	-0.00024891	523.7533702782478	24.509	0.34667	24.509	24.351	24.698	0					50	27	3	0	0	0	0.32112	1	2728	2728		3.9444	0	1	34676			2195	3845;5545	1481	1492	2972	2972					-0.02815751761181673
EAAEKEQEL	9	Unmodified	_EAAEKEQEL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	523.753661	1045.49277	-0.11342	-5.9404E-05	-0.31002	-0.00016237	-0.42344	-0.00022178	523.7533322304628	24.314	0.31597	24.414	24.263	24.579	0.099739	-0.047567	-4.0044E-05	NaN	3.9444	59	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32874			2196	3845;5545	1481	1492							-0.02815751761181673
EAAEKLKNR	9	Unmodified	_EAAEKLKNR_					0	0	0		ENST00000493076.5_1_22:35806581-35817581:+|nuORF;ENSG00000100297|ENST00000216122|MCM5	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.8013916015625	2	529.80128	1057.58801	0.25152	0.00013326	-0.58072	-0.00030766	-0.32919	-0.00017441	529.8009283839108	15.334	0.19087	15.407	15.325	15.515	0.072399					34	23	2	0	0	0	0.25875	1	474	474		1.8442	1.1539	1	26709			2197	1180	1482	1493	2973	2973					0.06151646220496332
EAAEMEDEA	9	Unmodified	_EAAEMEDEA_					0	0	0		ENST00000461445.5_1_3:38051140-38051556:-|nuORF;ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1	ENST00000461445.5_1_3:38051140-38051556:-|nuORF	ENST00000461445.5_1_3:38051140-38051556:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.25360107421875	2	497.68713	993.359706	-0.12783	-6.362E-05	2.0287	0.0010096	1.9008	0.00094603	497.6880596372786	43.05	0.43899	43.05	42.857	43.296	0					25	14	2	0	0	0	0.24635	1	8191	8191		10.824	3.5347	1	47968			2198	5108	1483	1494	2974	2974					-0.13723939209342007
EAAEVLQNNR	10	Unmodified	_EAAEVLQNNR_					0	0	0		ENSG00000130725|ENST00000253023|UBE2M	ENSG00000130725|ENST00000253023|UBE2M	ENSG00000130725|ENST00000253023|UBE2M	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.2916259765625	2	572.291276	1142.568	-0.12842	-7.3494E-05	0.28406	0.00016256	0.15564	8.9069E-05	572.2912874828808	28.797	0.26472	28.875	28.744	29.008	0.078287					27	17	2	0	0	0	0.45794	1	3808	3808		3.2813	1.7994	1	21977			2199	2489	1484	1495	2975	2975					0.0024185048989693314
EAAEVLQNNR	10	Unmodified	_EAAEVLQNNR_					0	0	0		ENSG00000130725|ENST00000253023|UBE2M	ENSG00000130725|ENST00000253023|UBE2M	ENSG00000130725|ENST00000253023|UBE2M	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	572.291276	1142.568	-0.16572	-9.4839E-05	0.20703	0.00011848	0.041315	2.3644E-05	572.2912008377773	28.88	0.36174	28.88	28.699	29.061	0	0.0023972	-2.9394E-05	NaN	3.2813	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29178			2200	2489	1484	1495							0.0024185048989693314
EAAGEVRAM	9	Oxidation (M)	_EAAGEVRAM(Oxidation (M))_		EAAGEVRAM(1)		EAAGEVRAM(140)	0	0	1		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.22381591796875	2	475.224017	948.43348	-0.56667	-0.0002693	0.1513	7.19E-05	-0.41537	-0.0001974	475.2240555842453	20.412	1.1585	20.412	20.049	21.208	0					255	121	3	0	0	0	0.00015475	4	1555	1555;1590;1622;1649		137.42	48.47	1	782710			2201	5847	1485	1496	2976;2977;2978;2979	2976		324			-0.04279926256356248
EAAGEVRAM	9	Oxidation (M)	_EAAGEVRAM(Oxidation (M))_		EAAGEVRAM(1)		EAAGEVRAM(120)	0	0	1		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.22381591796875	2	475.224017	948.43348	-0.53326	-0.00025342	0.077264	3.6718E-05	-0.45599	-0.0002167	475.2240179951587	21.794	2.7737	21.794	21.19	23.963	0					533	258	4	0	0	0	0.0016252	4	1936	1898;1936;1969;2006		118.07	52.833	1	487320			2202	5847	1485	1496	2980;2981;2982;2983	2981		324			-0.04279926256356248
EAAGEVRAM	9	Oxidation (M)	_EAAGEVRAM(Oxidation (M))_		EAAGEVRAM(1)		EAAGEVRAM(120)	0	0	1		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.22381591796875	2	475.224017	948.43348	-0.17599	-8.3637E-05	-0.24277	-0.00011537	-0.41877	-0.00019901	475.22381936106274	20.285	0.9134	20.385	20.035	20.948	0.099497					182	100	2	0	0	0	0.0016252	2	1477	1443;1477		118.07	43.139	1	386460			2203	5847	1485	1496	2984;2985	2985		324			-0.04279926256356248
EAAGEVRAM	9	Oxidation (M)	_EAAGEVRAM(Oxidation (M))_		EAAGEVRAM(1)		EAAGEVRAM(120)	0	0	1		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2238464355469	2	475.224017	948.43348	-0.22082	-0.00010494	-0.14091	-6.6965E-05	-0.36173	-0.0001719	475.22385224388387	21.518	2.564	21.62	20.801	23.365	0.10178					529	258	3	0	0	0	0.0016252	5	1736	1736;1769;1806;1838;1898		118.07	43.139	1	395230			2204	5847	1485	1496	2986;2987;2988;2989;2990	2986		324			-0.04279926256356248
EAAGEVRAM	9	Unmodified	_EAAGEVRAM_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2262878417969	2	467.226559	932.438566	-0.19213	-8.9768E-05	-0.30045	-0.00014038	-0.49258	-0.00023015	467.226361673441	28.694	1.0982	28.694	28.463	29.562	0					144	59	4	0	0	0	0.0045417	2	3933	3890;3933		89.401	26.828	1	622280			2205	5847	1485	1497	2991;2992	2992					-0.030356223937360483
EAAGEVRAM	9	Unmodified	_EAAGEVRAM_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.226318359375	2	467.226559	932.438566	-0.33275	-0.00015547	-0.079323	-3.7062E-05	-0.41207	-0.00019253	467.2264983647158	28.581	1.1936	28.663	28.436	29.63	0.082134					152	73	4	0	0	0	0.0042703	2	3779	3736;3779		99.755	24.826	1	626490			2206	5847	1485	1497	2993;2994	2994					-0.030356223937360483
EAAGWSARL	9	Unmodified	_EAAGWSARL_					0	0	0		ENST00000510509.1_1_5:41870266-41870568:+|nuORF	ENST00000510509.1_1_5:41870266-41870568:+|nuORF	ENST00000510509.1_1_5:41870266-41870568:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7406311035156	2	480.748516	959.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.219	1	24.219	23.719	24.719	0								0	0	0	0.26517	1	2623	2623		6.2058	0.47393	1				2207	6913	1486	1498	2995	2995					0.0011173009490903496
EAAKPEPVI	9	Unmodified	_EAAKPEPVI_					0	0	0		ENST00000604367.1_1_3:46964817-46965171:-|nuORF;ENST00000603885.5_1_3:46964817-47017956:-|nuORF;SETD2-CCDC12|1|fusion;ENSG00000160799|ENST00000683445|CCDC12;ENST00000488069.5_1_3:46964817-47018222:-|nuORF;SETD2-CCDC12|3|fusion;SETD2-CCDC12|2|fusion;SETD2-CCDC12|4|fusion	ENST00000604367.1_1_3:46964817-46965171:-|nuORF	ENST00000604367.1_1_3:46964817-46965171:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2685852050781	2	477.26875	952.522947	-0.054062	-2.5802E-05	0.12381	5.9091E-05	0.069749	3.3289E-05	477.2687072677358	36.589	0.82497	36.589	36.352	37.177	0					60	31	3	0	0	0	0.24767	2	6235	6235;6284		13.042	3.6593	1	342120			2208	3780	1487	1499	2996;2997	2996					0.04478651694671498
EAAKPEPVI	9	Unmodified	_EAAKPEPVI_					0	0	0		ENST00000604367.1_1_3:46964817-46965171:-|nuORF;ENST00000603885.5_1_3:46964817-47017956:-|nuORF;SETD2-CCDC12|1|fusion;ENSG00000160799|ENST00000683445|CCDC12;ENST00000488069.5_1_3:46964817-47018222:-|nuORF;SETD2-CCDC12|3|fusion;SETD2-CCDC12|2|fusion;SETD2-CCDC12|4|fusion	ENST00000604367.1_1_3:46964817-46965171:-|nuORF	ENST00000604367.1_1_3:46964817-46965171:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2686767578125	2	477.26875	952.522947	-0.051404	-2.4534E-05	0.21171	0.00010104	0.16031	7.651E-05	477.268739189023	36.525	0.64863	36.607	36.365	37.013	0.081711					60	27	4	0	0	0	0.17428	2	6128	6087;6128		21.537	6.6987	1	309970			2209	3780	1487	1499	2998;2999	2999					0.04478651694671498
EAALEVVL	8	Unmodified	_EAALEVVL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.2447509765625	2	422.244744	842.474934	0.23659	9.9901E-05	0.0091646	3.8697E-06	0.24576	0.00010377	422.2446530549988	73.463	0.6274	73.463	73.202	73.829	0					52	22	3	0	0	0	0.033117	3	17441	17441;17484;17535		67.035	7.2401	1	1366700			2210	793	1488	1500	3000;3001;3002	3000					0.047395777746373824
EAALEVVL	8	Unmodified	_EAALEVVL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.2448425292969	2	422.244744	842.474934	0.082265	3.4736E-05	0.21071	8.8971E-05	0.29297	0.00012371	422.2447337806381	73.376	0.65206	73.428	73.178	73.831	0.052574					54	25	3	0	0	0	0.018027	2	17273	17273;17323		86.121	7.6766	1	1593700			2211	793	1488	1500	3003;3004	3003					0.047395777746373824
EAALGPEKK	9	Unmodified	_EAALGPEKK_					0	0	0			REV__nc|ENSG00000182013|Q86V59-2|PNMA8A	REV__nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7662353515625	2	471.766374	941.518196	-0.31749	-0.00014978	-0.11347	-5.353E-05	-0.43095	-0.00020331	471.76627122604515	31.456	0.4181	31.456	31.258	31.676	0					40	18	3	0	0	0	0.28472	1	4754	4754		8.7454	0	1	85582	+		2212	10548	1489	1501	3005	3005					0.04509767551905952
EAALHALVQRT	11	Unmodified	_EAALHALVQRT_					0	0	0		A1CF|p.R21H|1|0.36|ENSG00000148584|chr10:50859879-50859879|C/T|missense_variant	A1CF|p.R21H|1|0.36|ENSG00000148584|chr10:50859879-50859879|C/T|missense_variant	A1CF|p.R21H|1|0.36|ENSG00000148584|chr10:50859879-50859879|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5623474121094	3	403.56305	1207.66732	0.37057	0.00014955	-2.8819	-0.001163	-2.5114	-0.0010135	403.5619113666792	36.092	0.43329	36.092	35.944	36.377	0					20	16	2	0	0	0	0.40693	1	6158	6158		1.1098	0.14748	1	35433			2213	0	1490	1502	3006	3006					0.07179293174635859
EAANYQDTIGR	11	Unmodified	_EAANYQDTIGR_					0	0	0		ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.2941284179688	2	619.294016	1236.57348	-0.44957	-0.00027841	0.71165	0.00044072	0.26208	0.0001623	619.2944304118241	33.948	0.76561	33.948	33.713	34.478	0					71	29	4	0	0	0	0.089332	3	5486	5438;5486;5542		48.073	37.273	1	257240			2214	494	1491	1503	3007;3008;3009	3008					-0.03534470718295779
EAANYQDTIGR	11	Unmodified	_EAANYQDTIGR_					0	0	0		ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.2942504882812	2	619.294016	1236.57348	-0.31217	-0.00019332	0.56519	0.00035002	0.25302	0.00015669	619.2943730303418	33.869	0.66823	33.944	33.74	34.408	0.074322					68	27	4	0	0	0	0.16864	3	5340	5297;5340;5389		35.08	26.924	1	240020			2215	494	1491	1503	3010;3011;3012	3011					-0.03534470718295779
EACPDPESLEF	11	Unmodified	_EACPDPESLEF_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.2603759765625	2	618.758086	1235.50162	0.10362	6.4116E-05	1.7107	0.0010585	1.8143	0.0011226	619.2605088836151	54.933	0.34003	54.933	54.798	55.138	0					20	12	2	0	0	0	0.40578	1	11837	11837		2.9952	0.26005	1	125090			2216	3103	1492	1504	3013	3013					-0.10671146187041813
EACPDPESLEF	11	Unmodified	_EACPDPESLEF_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	618.758086	1235.50162	0.10362	6.4116E-05	1.7107	0.0010585	1.8143	0.0011226	619.2605088836151	54.933	0.34003	54.933	54.798	55.138	0	-0.024774	0.00017695	NaN	2.9952	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125090			2217	3103	1492	1504							-0.10671146187041813
EACPDPESLEF	11	Unmodified	_EACPDPESLEF_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	618.758086	1235.50162	0.21897	0.00013549	1.3036	0.00080664	1.5226	0.00094213	619.2603703584874	54.918	0.33517	54.983	54.826	55.161	0.065128	0.024774	-0.00032678	NaN	2.9952	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112170			2218	3103	1492	1504							-0.10671146187041813
EACRQDLCFC	10	Unmodified	_EACRQDLCFC_					0	0	0		MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant;ENSG00000215182|ENST00000621226|MUC5AC	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2347412109375	2	594.235744	1186.45693	0.43122	0.00025625	-1.5344	-0.0009118	-1.1032	-0.00065555	594.2343906283645	97.055	0.47952	97.096	96.858	97.337	0.040848					46	22	3	0	0	0	0.46554	1	24527	24527		1.8442	0	1	157350			2219	5576	1493	1505	3014	3014					-0.12883571805696192
EACRQDLCFC	10	Unmodified	_EACRQDLCFC_					0	0	0		MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant;ENSG00000215182|ENST00000621226|MUC5AC	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	594.235744	1186.45693	0.44823	0.00026636	-1.5735	-0.00093502	-1.1252	-0.00066866	594.2344826676959	97.114	0.49971	97.114	96.888	97.387	0	0.0090755	-1.7551E-05	NaN	1.8442	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115100			2220	5576	1493	1505							-0.12883571805696192
EACRQDLCFC	10	Unmodified	_EACRQDLCFC_					0	0	0		MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant;ENSG00000215182|ENST00000621226|MUC5AC	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	594.235744	1186.45693	0.43122	0.00025625	-1.5344	-0.0009118	-1.1032	-0.00065555	594.2343906283645	97.055	0.47952	97.096	96.858	97.337	0.040848	-0.0090755	2.8879E-05	NaN	1.8442	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157350			2221	5576	1493	1505							-0.12883571805696192
EADNIASIPLE	11	Unmodified	_EADNIASIPLE_					0	0	0		nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant	nc|ENSG00000198947|P11532-3|DMD	nc|ENSG00000198947|P11532-3|DMD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2952270507812	2	586.295693	1170.57683	0.34017	0.00019944	-0.2484	-0.00014564	0.091766	5.3802E-05	586.2953080688859	104.63	0.45643	104.63	104.42	104.88	0					95	43	3	0	0	0	0.31274	1	26896	26896		16.566	0.71869	1	247040			2222	5434	1494	1506	3015	3015					-0.0016322066430802806
EADPGQYRC	9	Unmodified	_EADPGQYRC_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.71923828125	2	519.719098	1037.42364	-0.12002	-6.2376E-05	0.024947	1.2966E-05	-0.095072	-4.9411E-05	519.7191171711515	28.345	3.4735	28.345	27.527	31.001	0					434	193	5	0	0	0	0.0021834	2	3813	3777;3813		114.65	82.344	1	1019900			2223	4490	1495	1507	3016;3017	3017					-0.09357114261729294
EADPGQYRC	9	Unmodified	_EADPGQYRC_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.7189331054688	2	519.719098	1037.42364	-0.14443	-7.5061E-05	0.15348	7.9767E-05	0.0090546	4.7059E-06	519.7191869865516	28.246	2.9972	28.328	27.495	30.493	0.082134					486	191	5	0	0	0	0.0042703	3	3610	3610;3652;3691		99.755	80.316	1	1040900			2224	4490	1495	1507	3018;3019;3020	3018					-0.09357114261729294
EADPGSAAP	9	Unmodified	_EADPGSAAP_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.6825256347656	2	407.682507	813.350462	0.055337	2.256E-05	-0.17378	-7.0847E-05	-0.11844	-4.8287E-05	407.6824804951645	28.131	1.4768	28.131	27.859	29.335	0					179	80	5	0	0	0	0.0076571	2	3741	3741;3785		74.423	7.0789	1	2276900			2225	4299	1496	1508	3021;3022	3021					-0.06367919712715775
EADPGSAAP	9	Unmodified	_EADPGSAAP_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.68255615234375	2	407.682507	813.350462	-0.31756	-0.00012946	0.2733	0.00011142	-0.044263	-1.8045E-05	407.68268021502314	27.961	1.3158	28.044	27.751	29.067	0.082132					193	81	5	0	0	0	0.0076571	2	3553	3553;3594		74.423	7.0789	1	1887200			2226	4299	1496	1508	3023;3024	3023					-0.06367919712715775
EADPYKAVL	9	Unmodified	_EADPYKAVL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.2664489746094	2	503.266207	1004.51786	0.22349	0.00011247	0.0021323	1.0731E-06	0.22562	0.00011355	503.266293871123	48.126	1.5707	48.126	47.852	49.422	0					107	54	4	0	0	0	0.0040275	1	9771	9771		103.35	48.58	1	3892600			2227	979	1497	1509	3025	3025					0.01578347832048621
EADPYKAVL	9	Unmodified	_EADPYKAVL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.2663879394531	2	503.266207	1004.51786	0.42091	0.00021183	-0.18703	-9.4123E-05	0.23388	0.00011771	503.26617008792584	48.046	1.0327	48.126	47.843	48.876	0.080032					91	35	5	0	0	0	0.0040275	1	9614	9614		103.35	48.58	1	3155600			2228	979	1497	1509	3026	3026					0.01578347832048621
EADRNPPVL	9	Unmodified	_EADRNPPVL_					0	0	0		ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8	ENSG00000167447|ENST00000300917|SMG8	ENSG00000167447|ENST00000300917|SMG8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7667236328125	2	505.766906	1009.51926	0.20925	0.00010583	-0.4462	-0.00022567	-0.23695	-0.00011984	505.76659314697133	37.695	0.83148	37.695	37.442	38.274	0					69	28	4	0	0	0	0.023873	2	6590	6590;6639		55.503	30.103	1	361770			2229	4210	1498	1510	3027;3028	3027					0.014879819208090339
EADRNPPVL	9	Unmodified	_EADRNPPVL_					0	0	0		ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8	ENSG00000167447|ENST00000300917|SMG8	ENSG00000167447|ENST00000300917|SMG8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7668762207031	2	505.766906	1009.51926	0.2465	0.00012467	-0.25568	-0.00012931	-0.009174	-4.6399E-06	505.7666721182483	37.582	0.72007	37.666	37.445	38.165	0.084476					60	24	4	0	0	0	0.03918	2	6427	6427;6477		45.7	22.963	1	317490			2230	4210	1498	1510	3029;3030	3029					0.014879819208090339
EADRTAIHEVM	11	Unmodified	_EADRTAIHEVM_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.3058471679688	2	636.306069	1270.59759	-0.0489	-3.1116E-05	1.0726	0.00068251	1.0237	0.0006514	636.3068493809817	34.815	0.41047	34.815	34.621	35.032	0					28	15	3	0	0	0	0.40891	1	5713	5713		2.2828	0.80087	1	27577			2231	4165	1499	1511	3031	3031					-0.026889535562759193
EADSFFKVL	9	Unmodified	_EADSFFKVL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2742309570312	2	528.274032	1054.53351	0.51294	0.00027097	-0.40524	-0.00021408	0.1077	5.6895E-05	528.27395459751	69.587	0.71057	69.587	69.379	70.09	0					60	24	4	0	0	0	0.020768	2	16316	16262;16316		57.722	25.416	1	530440			2232	3942	1500	1512	3032;3033	3033					0.008426343491237276
EADSFFKVL	9	Unmodified	_EADSFFKVL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2740478515625	2	528.274032	1054.53351	0.27828	0.00014701	-0.53583	-0.00028306	-0.25755	-0.00013606	528.273956920378	69.534	0.57729	69.596	69.42	69.997	0.062126					50	20	3	0	0	0	0.048027	2	16139	16139;16200		43.772	16.889	1	520330			2233	3942	1500	1512	3034;3035	3034					0.008426343491237276
EADYSYWTL	9	Unmodified	_EADYSYWTL_					0	0	0		ENST00000593832.1_1_19:17691448-17692250:+|nuORF;ENSG00000130309|ENST00000252599|COLGALT1;ENST00000486375.1_1_1:183899365-183909857:-|nuORF;ENSG00000198756|ENST00000361927|COLGALT2	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.250732421875	2	574.250754	1146.48696	0.23648	0.0001358	-1.1624	-0.0006675	-0.92591	-0.0005317	574.2499276442683	78.825	0.33048	78.825	78.651	78.982	0					18	11	2	0	0	0	0.10833	1	19105	19105		30.637	15.798	1	101900			2234	2465	1501	1513	3036	3036					-0.08042850272863689
EADYSYWTL	9	Unmodified	_EADYSYWTL_					0	0	0		ENST00000593832.1_1_19:17691448-17692250:+|nuORF;ENSG00000130309|ENST00000252599|COLGALT1;ENST00000486375.1_1_1:183899365-183909857:-|nuORF;ENSG00000198756|ENST00000361927|COLGALT2	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.250754	1146.48696	0.33426	0.00019195	-2.0268	-0.0011639	-1.6925	-0.00097193	574.7510292147726	78.773	0.36667	78.803	78.651	79.018	0.030159	-0.011048	-0.00032201	NaN	30.637	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142780			2235	2465	1501	1513							-0.08042850272863689
EAEMFGWSF	9	Unmodified	_EAEMFGWSF_					0	0	0		ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2;ENST00000498777.5_1_7:56132001-56141950:+|nuORF;ENST00000483327.5_1_7:56132001-56140978:+|nuORF;nc|ENSG00000129103|Q8NBJ7-5|SUMF2;nc|ENSG00000129103|Q8NBJ7-4|SUMF2	ENSG00000129103|ENST00000434526|SUMF2	ENSG00000129103|ENST00000434526|SUMF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.784423828125	2	552.228768	1102.44298	0.48431	0.00026745	0.84329	0.00046569	1.3276	0.00073314	552.2290618989612	91.704	0.59644	91.74	91.531	92.127	0.035851					40	21	3	0	0	0	0.24263	1	22897	22897		12.532	0	1	330920			2236	2419	1502	1514	3037	3037					-0.10414157970831184
EAEPYDTSL	9	Unmodified	_EAEPYDTSL_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7271728515625	2	512.727112	1023.43967	0.19116	9.8015E-05	0.28837	0.00014785	0.47953	0.00024587	512.7271238994381	51.783	0.54577	51.783	51.529	52.075	0					45	18	4	0	0	0	0.0074933	1	10834	10834		74.929	53.182	1	289430			2237	4325	1503	1515	3038	3038					-0.07111129543841344
EAEPYDTSL	9	Unmodified	_EAEPYDTSL_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2930297851562	2	512.727112	1023.43967	0.2829	0.00014505	0.21474	0.0001101	0.49764	0.00025516	512.7271134573598	51.672	0.44436	51.742	51.556	52	0.069874					37	15	3	0	0	0	0.010722	1	10682	10682		78.149	78.149	1	262730			2238	4325	1503	1515	3039	3039					-0.07111129543841344
EAFEFVKQR	9	Unmodified	_EAFEFVKQR_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1;nc|ENSG00000120875|Q13115-2|DUSP4;ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.802734375	2	577.303655	1152.59276	0.27294	0.00015757	-4.1883	-0.0024179	-3.9153	-0.0022603	577.801933287631	39.096	0.43944	39.182	38.994	39.433	0.08688					42	17	3	0	0	0	0.27929	1	6884	6884		9.3831	6.1018	1	73932			2239	2109	1504	1516	3040	3040					0.02256530363274578
EAFLTFLCVM	10	Unmodified	_EAFLTFLCVM_					0	0	0		nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1;ENST00000555210.1_1_15:92669436-92694191:+|nuORF	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3089599609375	2	587.287771	1172.56099	0.78144	0.00045893	3.3337	0.0019579	4.1152	0.0024168	587.2901084857732	71.096	0.57504	71.154	70.967	71.542	0.058578					40	20	3	0	0	0	0.37232	1	16618	16618		14.838	4.0388	1	128740			2240	4663	1505	1517	3041	3041					-0.018389217065532648
EAFPHDSQL	9	Unmodified	_EAFPHDSQL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2427978515625	2	522.243264	1042.47197	-0.55055	-0.00028752	-0.13414	-7.0051E-05	-0.68469	-0.00035757	522.2431334137402	41.99	1.0851	41.99	41.711	42.796	0					78	37	3	0	0	0	0.031665	3	7952	7862;7952;8006		49.933	24.534	1	573500			2241	774	1506	1518	3042;3043;3044	3043					-0.04756297350195382
EAFPHDSQL	9	Unmodified	_EAFPHDSQL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.24267578125	2	522.243264	1042.47197	-0.412	-0.00021516	0.060272	3.1477E-05	-0.35172	-0.00018369	522.243217754176	41.927	0.76011	42.016	41.76	42.52	0.089764					68	28	3	0	0	0	0.07372	2	7715	7715;7803		38.176	22.328	1	489270			2242	774	1506	1518	3045;3046	3045					-0.04756297350195382
EAFQGEQNDF	10	Unmodified	_EAFQGEQNDF_					0	0	0		ENSG00000186230|ENST00000334181|ZNF749	ENSG00000186230|ENST00000334181|ZNF749	ENSG00000186230|ENST00000334181|ZNF749	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.74462890625	2	592.746367	1183.47818	0.69205	0.00041021	-2.0911	-0.0012395	-1.399	-0.00082928	592.7448350939951	79.918	0.80222	79.918	79.511	80.313	0					81	27	5	0	0	0	0.39071	1	19471	19471		12.873	2.722	1	474340			2243	5072	1507	1519	3047	3047					-0.10621823909332306
EAFRYTQLRTL	11	Unmodified	_EAFRYTQLRTL_					0	0	0			REV__BICD2-IPPK|1|fusion	REV__BICD2-IPPK|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.58905029296875	3	466.589376	1396.7463	0.18892	8.8148E-05	-0.3705	-0.00017287	-0.18158	-8.4725E-05	466.58923398963117	53.171	0.48375	53.171	53.006	53.49	0					38	20	3	0	0	0	0.40904	1	11282	11282		2.2527	1.0379	1	198390	+		2244	7739	1508	1520	3048	3048					0.0637952040892742
EAFRYTQLRTL	11	Unmodified	_EAFRYTQLRTL_					0	0	0			REV__BICD2-IPPK|1|fusion	REV__BICD2-IPPK|1|fusion	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	466.589376	1396.7463	0.18892	8.8148E-05	-0.3705	-0.00017287	-0.18158	-8.4725E-05	466.58923398963117	53.171	0.48375	53.171	53.006	53.49	0	-0.016951	-0.00026874	NaN	2.2527	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198390	+		2245	7739	1508	1520							0.0637952040892742
EAFRYTQLRTL	11	Unmodified	_EAFRYTQLRTL_					0	0	0			REV__BICD2-IPPK|1|fusion	REV__BICD2-IPPK|1|fusion	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	466.589376	1396.7463	0.16874	7.8732E-05	-0.050134	-2.3392E-05	0.11861	5.5341E-05	466.5892870231988	53.14	0.35243	53.205	53.033	53.385	0.06543	0.016951	0.00017971	NaN	2.2527	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181140	+		2246	7739	1508	1520							0.0637952040892742
EAFVERDSL	9	Unmodified	_EAFVERDSL_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.263916015625	2	533.264196	1064.51384	-0.15448	-8.2379E-05	-0.0071761	-3.8268E-06	-0.16166	-8.6205E-05	533.2641231775863	44.975	0.5238	44.975	44.747	45.271	0					48	18	4	0	0	0	0.012041	2	8788	8788;8832		63.961	29.559	1	228620			2247	2883	1509	1521	3049;3050	3049					-0.015837416616705013
EAFVERDSL	9	Unmodified	_EAFVERDSL_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2642211914062	2	533.264196	1064.51384	0.20442	0.00010901	-0.24745	-0.00013195	-0.043029	-2.2946E-05	533.2639831121355	44.923	0.56115	45.011	44.76	45.321	0.08754					42	21	3	0	0	0	0.023873	2	8636	8636;8681		55.503	21.101	1	172420			2248	2883	1509	1521	3051;3052	3051					-0.015837416616705013
EAFVWEPAM	9	Oxidation (M)	_EAFVWEPAM(Oxidation (M))_		EAFVWEPAM(1)		EAFVWEPAM(100)	0	0	1		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.244873046875	2	548.244418	1094.47428	0.58387	0.0003201	0.7235	0.00039666	1.3074	0.00071676	548.2444458142598	70.25	0.91873	70.25	69.818	70.737	0					90	33	5	0	0	0	0.0042542	1	16478	16478		100.37	55.964	1	669360			2249	2738	1510	1522	3053	3053		175			-0.0691758493674115
EAFVWEPAM	9	Oxidation (M)	_EAFVWEPAM(Oxidation (M))_		EAFVWEPAM(1)		EAFVWEPAM(89)	0	0	1		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2445068359375	2	548.244418	1094.47428	0.03757	2.0597E-05	0.73358	0.00040218	0.77115	0.00042278	548.2446200492017	72.333	1.2543	72.333	71.948	73.202	0					125	43	5	0	0	0	0.0045547	4	17156	17060;17109;17156;17199		88.904	44.497	1	629070			2250	2738	1510	1522	3054;3055;3056;3057	3056		175			-0.0691758493674115
EAFVWEPAM	9	Oxidation (M)	_EAFVWEPAM(Oxidation (M))_		EAFVWEPAM(1)		EAFVWEPAM(93)	0	0	1		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2446899414062	2	548.244418	1094.47428	0.53893	0.00029547	0.53393	0.00029272	1.0729	0.00058819	548.2446772538657	70.182	0.65637	70.242	70.013	70.67	0.060562					57	27	3	0	0	0	0.004452	1	16299	16299		92.822	39.247	1	553390			2251	2738	1510	1522	3058	3058		175			-0.0691758493674115
EAFVWEPAM	9	Oxidation (M)	_EAFVWEPAM(Oxidation (M))_		EAFVWEPAM(1)		EAFVWEPAM(93)	0	0	1		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2444458007812	2	548.244418	1094.47428	0.21595	0.00011839	0.3092	0.00016952	0.52515	0.00028791	548.2445097163676	72.287	1.2053	72.343	71.95	73.156	0.055931					109	41	4	0	0	0	0.004452	6	16933	16882;16916;16933;16966;16983;17046		92.822	48.415	1	659990			2252	2738	1510	1522	3059;3060;3061;3062;3063;3064	3061		175			-0.0691758493674115
EAFVWEPAM	9	Unmodified	_EAFVWEPAM_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7597045898438	2	540.24696	1078.47937	0.85325	0.00046096	-0.49009	-0.00026477	0.36315	0.00019619	540.2464925905352	80.145	0.49747	80.145	79.958	80.456	0					23	16	2	0	0	0	0.18479	1	19523	19523		26.884	2.8631	1	140160			2253	2738	1510	1523	3065	3065					-0.05673281074132319
EAFVWEPAM	9	Unmodified	_EAFVWEPAM_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.75927734375	2	540.24696	1078.47937	0.68294	0.00036896	-0.87177	-0.00047097	-0.18883	-0.00010201	540.2464469423426	80.087	0.31036	80.114	79.991	80.302	0.026436					16	10	2	0	0	0	0.15911	1	19353	19353		25.399	7.253	1	135230			2254	2738	1510	1523	3066	3066					-0.05673281074132319
EAFWINRRNND	11	Unmodified	_EAFWINRRNND_					0	0	0			REV__nc|ENSG00000124493|Q14833-3|GRM4	REV__nc|ENSG00000124493|Q14833-3|GRM4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2185363769531	3	478.900613	1433.68001	-0.38693	-0.0001853	2.0992	0.0010053	1.7123	0.00082002	478.9016715055043	28.597	0.40308	28.679	28.512	28.915	0.082132					56	23	4	0	0	0	0.311	1	3784	3784		0.50596	0.051438	1	51959	+		2255	8956	1511	1524	3067	3067					-0.019482954330896973
EAFYRQNLPN	10	Unmodified	_EAFYRQNLPN_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3078002929688	2	626.309469	1250.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.573	1	61.573	61.073	62.073	0								0	0	0	0.3332	1	13837	13837		8.1555	1.4324	1				2256	626	1512	1525	3068	3068					-0.010892726133761244
EAGENQKQP	9	Unmodified	_EAGENQKQP_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.738525390625	2	500.738345	999.462138	-0.18848	-9.4377E-05	0.30625	0.00015335	0.11778	5.8976E-05	500.7384615025537	25.465	0.53378	25.465	25.237	25.771	0					84	41	3	0	0	0	0.30397	1	2947	2947		6.2058	0.47393	1	70082			2257	3804	1513	1526	3069	3069					-0.037614853555623995
EAGPSIVHR	9	Unmodified	_EAGPSIVHR_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2616271972656	2	483.261791	964.509028	-0.47258	-0.00022838	0.19376	9.3638E-05	-0.27882	-0.00013474	483.2618838332606	24.979	1.9818	24.979	24.712	26.694	0					333	152	4	0	0	0	0.0046221	6	2839	2803;2839;2875;2908;2942;2999		86.332	51.93	1	1090700			2258	1566	1514	1527	3070;3071;3072;3073;3074;3075	3071					0.025354189862468957
EAGPSIVHR	9	Unmodified	_EAGPSIVHR_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.26171875	2	483.261791	964.509028	-0.30069	-0.00014531	0.15648	7.5622E-05	-0.14421	-6.9689E-05	483.26187415574174	24.843	1.7161	24.939	24.637	26.353	0.096075					322	147	4	0	0	0	0.0042703	5	2662	2626;2662;2698;2733;2770		99.755	47.487	1	1168800			2259	1566	1514	1527	3076;3077;3078;3079;3080	3077					0.025354189862468957
EAGPVEQQL	9	Unmodified	_EAGPVEQQL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2023010253906	2	485.745639	969.476725	-0.43368	-0.00021066	-0.19119	-9.2869E-05	-0.62487	-0.00030353	485.7455887217074	44.874	0.3525	44.874	44.747	45.1	0					23	12	2	0	0	0	0.25458	1	8727	8727		5.7319	1.4026	1	68970			2260	2376	1515	1528	3081	3081					-0.009234132074197987
EAGPVEQQL	9	Unmodified	_EAGPVEQQL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	485.745639	969.476725	-0.20123	-9.7745E-05	-0.13606	-6.6093E-05	-0.33729	-0.00016384	485.7456278738677	44.814	0.3569	44.901	44.76	45.117	0.087543	0.013754	3.6062E-05	NaN	5.7319	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56592			2261	2376	1515	1528							-0.009234132074197987
EAHGSSAETLV	11	Unmodified	_EAHGSSAETLV_					0	0	0			REV__ENST00000523731.5_1_8:95869036-95869093:+|nuORF	REV__ENST00000523731.5_1_8:95869036-95869093:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2902221679688	2	550.76456	1099.51457	0.90438	0.0004981	-0.95818	-0.00052773	-0.053802	-2.9632E-05	550.7631204999869	80.856	0.58929	80.856	80.646	81.235	0					26	19	2	0	0	0	0.31023	1	19837	19837		8.1555	1.4324	1	76386	+		2262	12310	1516	1529	3082	3082					-0.031209470126214
EAHGSSAETLV	11	Unmodified	_EAHGSSAETLV_					0	0	0			REV__ENST00000523731.5_1_8:95869036-95869093:+|nuORF	REV__ENST00000523731.5_1_8:95869036-95869093:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	550.76456	1099.51457	0.75548	0.00041609	-1.3013	-0.00071669	-0.54578	-0.0003006	550.763370464333	80.848	0.53912	80.872	80.625	81.164	0.023613	0.0079042	-0.00015185	NaN	8.1555	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124540	+		2263	12310	1516	1529							-0.031209470126214
EAIAELDTL	9	Unmodified	_EAIAELDTL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ;YWHAZ|p.S207I|1|0.43|ENSG00000164924|chr8:100924013-100924013|C/A|missense_variant;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.75518798828125	2	487.755672	973.496792	0.35746	0.00017436	-0.35951	-0.00017535	-0.0020476	-9.9872E-07	487.7554501011175	69.167	0.46062	69.167	68.983	69.443	0					36	15	3	0	0	0	0.0020132	1	16153	16153		115.69	34.079	1	447950			2264	2657	1517	1530	3083	3083					0.008983377325193942
EAIAELDTL	9	Unmodified	_EAIAELDTL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ;YWHAZ|p.S207I|1|0.43|ENSG00000164924|chr8:100924013-100924013|C/A|missense_variant;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7556457519531	2	487.755672	973.496792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.169	1	69.231	68.731	69.731	0.062126								0	0	0	1.4578E-08	1	16000	16000		115.69	34.079	1				2265	2657	1517	1530	3084	3084					0.008983377325193942
EAIEGTYIDK	10	Unmodified	_EAIEGTYIDK_					0	0	0		ENST00000600027.5_1_19:49999677-50000944:+|nuORF;ENSG00000142534|ENST00000270625|RPS11	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.78515625	2	569.784961	1137.55537	-0.18622	-0.00010611	0.002629	1.498E-06	-0.18359	-0.00010461	569.7849784448377	40.138	0.35653	40.138	39.954	40.31	0					21	12	2	0	0	0	0.44253	1	7324	7324		6.1918	2.2475	1	49938			2266	7295	1518	1531	3085	3085					-0.007906056930096383
EAIKQIEVL	9	Unmodified	_EAIKQIEVL_					0	0	0		nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.8109741210938	2	521.810782	1041.60701	0.41259	0.00021529	0.043744	2.2826E-05	0.45634	0.00023812	521.8107786498106	53.854	0.39626	53.919	53.761	54.158	0.065315					33	14	3	0	0	0	0.026809	1	11344	11344		53.404	0	1	287450			2267	1976	1519	1532	3086	3086					0.08787182791570558
EAILEYIL	8	Unmodified	_EAILEYIL_					0	0	0		ENST00000601340.5_1_19:50061444-50083809:-|nuORF;ENST00000600019.5_1_19:50060962-50063200:-|nuORF;ENST00000599425.5_1_19:50060962-50063306:-|nuORF;ENST00000598820.5_1_19:50061979-50083776:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP	ENST00000601340.5_1_19:50061444-50083809:-|nuORF	ENST00000601340.5_1_19:50061444-50083809:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7815246582031	2	482.273501	962.532449	0.028024	1.3515E-05	0.39919	0.00019252	0.42722	0.00020604	482.2735421388336	91.673	0.33038	91.709	91.498	91.828	0.035446					22	11	3	0	0	0	0.34579	1	22849	22849		23.148	0	1	128390			2268	3110	1520	1533	3087	3087					0.04968419980184535
EAINSDPEL	9	Unmodified	_EAINSDPEL_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2351989746094	2	494.235104	986.455655	0.31584	0.0001561	1.003	0.00049569	1.3188	0.0006518	494.23502389215747	49.282	0.53131	49.282	49.059	49.59	0					32	18	3	0	0	0	0.2359	1	10121	10121		14.405	8.1996	1	74774			2269	4086	1521	1534	3088	3088					-0.03811423306956385
EAINSDPEL	9	Unmodified	_EAINSDPEL_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2349853515625	2	494.235104	986.455655	0.20784	0.00010272	-0.00024121	-1.1921E-07	0.2076	0.0001026	494.23496935893826	49.2	0.29591	49.277	49.132	49.428	0.076603					18	10	2	0	0	0	0.19307	1	9953	9953		19.362	5.4559	1	95897			2270	4086	1521	1534	3089	3089					-0.03811423306956385
EAINVEQAF	9	Unmodified	_EAINVEQAF_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7525634765625	2	510.753464	1019.49238	0.49492	0.00025278	-0.67594	-0.00034524	-0.18102	-9.2456E-05	510.75325114093516	63.901	0.39959	63.901	63.679	64.078	0					23	14	2	0	0	0	0.032232	2	14556	14556;14579		49.527	18.259	1	202060			2271	830	1522	1535	3090;3091	3090					-0.016591266903787982
EAINVEQAF	9	Unmodified	_EAINVEQAF_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7379150390625	2	510.753464	1019.49238	0.43128	0.00022028	-1.8976	-0.0009692	-1.4663	-0.00074893	510.7530510108106	64.321	0.16872	64.392	64.261	64.43	0.071022					6	5	2	0	0	0	0.27929	1	14539	14539		9.3831	0.035688	1	39968			2272	830	1522	1535	3092	3092					-0.016591266903787982
EAINVEQAF	9	Unmodified	_EAINVEQAF_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7533264160156	2	510.753464	1019.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.813	1	63.884	63.384	64.384	0.071018								0	0	0	0.019321	1	14379	14379		63.227	25.052	1				2273	830	1522	1535	3093	3093					-0.016591266903787982
EAINVEQAF	9	Unmodified	_EAINVEQAF_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7381286621094	2	510.753464	1019.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.905	1	63.976	63.476	64.476	0.071018								0	0	0	0.094528	1	14407	14407		34.932	3.6637	1				2274	830	1522	1535	3094	3094					-0.016591266903787982
EAIREHQM	8	Unmodified	_EAIREHQM_					0	0	0		ENST00000395053.7_1_20:62701832-62703530:+|nuORF;ENST00000461072.5_1_20:62701832-62703375:+|nuORF;ENST00000465111.5_1_20:62701563-62703530:+|nuORF;ENST00000477783.5_1_20:62701125-62703530:+|nuORF;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000171703|Q15560-2|TCEA2;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000171703|ENST00000343484|TCEA2;ENSG00000187735|ENST00000521604|TCEA1;ENSG00000204219|ENST00000450454|TCEA3	ENST00000395053.7_1_20:62701832-62703530:+|nuORF	ENST00000395053.7_1_20:62701832-62703530:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.24505615234375	2	507.245283	1012.47601	0.048868	2.4788E-05	-0.43726	-0.0002218	-0.38839	-0.00019701	507.2449686855279	20.683	0.36124	20.783	20.649	21.01	0.099499					80	39	3	0	0	0	0.32977	1	1558	1558		32.305	10.559	1	63164			2275	4455	1523	1536	3095	3095					-0.02972531128114042
EAIYNFEVL	9	Unmodified	_EAIYNFEVL_					0	0	0		ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3;DSC3|p.F243L|1|0.25|ENSG00000134762|chr18:31024395-31024395|G/C|missense_variant	ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.279296875	2	549.279315	1096.54408	0.755	0.0004147	-0.89255	-0.00049026	-0.13755	-7.5556E-05	549.2789974553499	81.946	1.3861	81.946	81.461	82.848	0					82	48	4	0	0	0	0.0068798	1	20049	20049		76.825	4.9025	1	968260			2276	2687	1524	1537	3096	3096					-0.0003338299648021348
EAIYNFEVL	9	Unmodified	_EAIYNFEVL_					0	0	0		ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3;DSC3|p.F243L|1|0.25|ENSG00000134762|chr18:31024395-31024395|G/C|missense_variant	ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.279296875	2	549.279315	1096.54408	0.45195	0.00024825	-0.28364	-0.0001558	0.16832	9.2453E-05	549.2791930584373	81.959	0.7005	81.981	81.676	82.377	0.021866					50	24	3	0	0	0	0.0040167	1	19892	19892		103.42	21.529	1	1098000			2277	2687	1524	1537	3097	3097					-0.0003338299648021348
EAKQVPRSY	9	Unmodified	_EAKQVPRSY_					0	0	0			REV__ENSG00000112309|ENST00000230053|B3GAT2	REV__ENSG00000112309|ENST00000230053|B3GAT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.77197265625	2	539.288005	1076.56146	-0.18044	-9.7307E-05	-0.44465	-0.0002398	-0.62509	-0.0003371	539.287692350161	43.024	0.31855	43.024	42.886	43.205	0					15	10	2	0	0	0	0.25579	1	8215	8215		4.3292	1.334	1	34209	+		2278	8655	1525	1538	3098	3098					0.026239573292059504
EAKVQSCF	8	Unmodified	_EAKVQSCF_					0	0	0			REV__CTNNA3|p.I781F|1|0.26|ENSG00000183230|chr10:65966671-65966671|T/A|missense_variant	REV__CTNNA3|p.I781F|1|0.26|ENSG00000183230|chr10:65966671-65966671|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.8605041503906	2	456.218203	910.421853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.202	1	55.202	54.702	55.702	0								0	0	0	0.38822	1	11899	11899		4.3292	1.7518	1		+		2279	7864	1526	1539	3099	3099					-0.0369412327969485
EALAELEEI	9	Unmodified	_EALAELEEI_					0	0	0			REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7605895996094	2	508.760955	1015.50736	-0.057874	-2.9444E-05	-0.17082	-8.6906E-05	-0.22869	-0.00011635	508.7608285708433	72.544	0.40099	72.544	72.317	72.718	0					27	13	3	0	0	0	0.015682	2	17160	17160;17207		61.357	0	1	157540	+		2280	12964	1527	1540	3100;3101	3100					0.0002232038694955918
EALAELEEI	9	Unmodified	_EALAELEEI_					0	0	0			REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.76080322265625	2	508.760955	1015.50736	0.11431	5.8157E-05	-0.52541	-0.00026731	-0.4111	-0.00020915	508.76082462150714	72.46	0.457	72.516	72.265	72.722	0.055939					21	15	2	0	0	0	0.047633	1	16997	16997		43.858	0	1	160910	+		2281	12964	1527	1540	3102	3102					0.0002232038694955918
EALAYFITV	9	Unmodified	_EALAYFITV_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7786865234375	2	513.778951	1025.54335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.766	1	86.766	86.266	87.266	0								0	0	0	0.090696	1	21523	21523		36.127	5.4905	1				2282	2243	1528	1541	3103	3103					0.031598223544506254
EALEQVHR	8	Unmodified	_EALEQVHR_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2590637207031	2	491.259248	980.503943	-0.22902	-0.00011251	-0.20028	-9.839E-05	-0.4293	-0.0002109	491.2594703993397	23.919	3.2751	23.919	23.657	26.932	0					623	261	5	0	0	0	0.53026	1	2903	2903		7.9102	3.1541	1	3789000	+		2283	8375	1529	1542	3104	3104					0.012911151236153273
EALFRAPR	8	Unmodified	_EALFRAPR_					0	0	0			REV__ENST00000432063.6_1_11:61250210-61254000:+|nuORF	REV__ENST00000432063.6_1_11:61250210-61254000:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7400817871094	2	480.274701	958.534849	0.34577	0.00016607	-2.917	-0.0014009	-2.5712	-0.0012349	480.2732541281022	54.247	0.21597	54.247	54.131	54.347	0					10	7	2	0	0	0	0.35759	1	11626	11626		12.532	0.29089	1	75424	+		2284	11451	1530	1543	3105	3105					0.05392313228514922
EALGPGPPASL	11	Unmodified	_EALGPGPPASL_					0	0	0		ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7712707519531	2	504.771657	1007.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.685	1	54.685	54.185	55.185	0								0	0	0	0.30951	1	11741	11741		11.495	0.67078	1				2285	2682	1531	1544	3106	3106					0.025297502063153843
EALGSGLVSR	10	Unmodified	_EALGSGLVSR_					0	0	0		ENSG00000104823|ENST00000221418|ECH1	ENSG00000104823|ENST00000221418|ECH1	ENSG00000104823|ENST00000221418|ECH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.77471923828125	2	494.774731	987.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.837	1	40.837	40.337	41.337	0								0	0	0	0.33805	1	7544	7544		2.4985	0.19575	1				2286	1432	1532	1545	3107	3107					0.04064268437866758
EALNDYKT	8	Unmodified	_EALNDYKT_					0	0	0		nc|ENSG00000143033|Q9Y483-3|MTF2;nc|ENSG00000143033|Q9Y483-4|MTF2;ENSG00000143033|ENST00000370298|MTF2	nc|ENSG00000143033|Q9Y483-3|MTF2	nc|ENSG00000143033|Q9Y483-3|MTF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2318420410156	2	477.232364	952.450176	-0.34902	-0.00016656	-0.31041	-0.00014814	-0.65943	-0.0003147	477.23199980550726	31.398	0.42944	31.471	31.346	31.776	0.07378					26	20	2	0	0	0	0.53666	2	4592	4592;4668		3.5965	1.5367	1	20880			2287	3129	1533	1546	3108;3109	3108					-0.027951020987757147
EALNDYKT	8	Unmodified	_EALNDYKT_					0	0	0		nc|ENSG00000143033|Q9Y483-3|MTF2;nc|ENSG00000143033|Q9Y483-4|MTF2;ENSG00000143033|ENST00000370298|MTF2	nc|ENSG00000143033|Q9Y483-3|MTF2	nc|ENSG00000143033|Q9Y483-3|MTF2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	477.232364	952.450176	-0.37668	-0.00017976	0.086568	4.1313E-05	-0.29011	-0.00013845	477.23230316775124	31.448	0.34357	31.448	31.305	31.649	0	-0.011461	0.00015224	NaN	3.5965	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27643			2288	3129	1533	1546							-0.027951020987757147
EALNQVTQR	9	Unmodified	_EALNQVTQR_					0	0	0		PRKCD|p.K488Qfs*26|1|0.21|ENSG00000163932|chr3:53188763-53188764|-/T|frameshift_variant;ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD;PRKCD-SLC4A8|1|fusion;PRKCD-SLC4A8|2|fusion	PRKCD|p.K488Qfs*26|1|0.21|ENSG00000163932|chr3:53188763-53188764|-/T|frameshift_variant	PRKCD|p.K488Qfs*26|1|0.21|ENSG00000163932|chr3:53188763-53188764|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7831420898438	2	529.783087	1057.55162	-0.12231	-6.48E-05	0.32575	0.00017258	0.20344	0.00010778	529.7830380946891	29.564	0.24363	29.564	29.423	29.666	0					20	11	3	0	0	0	0.32831	1	4163	4163		2.9952	1.5133	1	21828			2289	3960	1534	1547	3110	3110					0.025147693238068314
EALNQVTQR	9	Unmodified	_EALNQVTQR_					0	0	0		PRKCD|p.K488Qfs*26|1|0.21|ENSG00000163932|chr3:53188763-53188764|-/T|frameshift_variant;ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD;PRKCD-SLC4A8|1|fusion;PRKCD-SLC4A8|2|fusion	PRKCD|p.K488Qfs*26|1|0.21|ENSG00000163932|chr3:53188763-53188764|-/T|frameshift_variant	PRKCD|p.K488Qfs*26|1|0.21|ENSG00000163932|chr3:53188763-53188764|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7825927734375	2	529.783087	1057.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.477	1	29.555	29.055	30.055	0.078287								0	0	0	0.26958	1	4020	4020		5.2969	2.0156	1				2290	3960	1534	1547	3111	3111					0.025147693238068314
EALNVLVNR	9	Unmodified	_EALNVLVNR_					0	0	0		ENSG00000156587|ENST00000287156|UBE2L6;nc|ENSG00000156587|O14933-2|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7670288085938	2	514.298373	1026.58219	0.34372	0.00017678	0.13339	6.8601E-05	0.47711	0.00024538	514.2984420306594	48.11	0.26291	48.11	47.961	48.224	0					11	8	2	0	0	0	0.25644	1	9758	9758		3.9444	1.2092	1	42104			2291	3629	1535	1548	3112	3112					0.06996547708831713
EALPLDHTL	9	Unmodified	_EALPLDHTL_					0	0	0		ENST00000519338.1_1_8:82614932-82615299:-|nuORF;ENST00000519464.5_1_8:82614932-82621025:-|nuORF;nc|ENSG00000104231|Q8TCF1-2|ZFAND1;nc|ENSG00000104231|Q8TCF1-3|ZFAND1;ENSG00000104231|ENST00000220669|ZFAND1	ENST00000519338.1_1_8:82614932-82615299:-|nuORF	ENST00000519338.1_1_8:82614932-82615299:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7726745605469	2	504.771657	1007.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.593	1	54.593	54.093	55.093	0								0	0	0	0.22204	1	11713	11713		14.838	0.93222	1				2292	1405	1536	1549	3113	3113					0.025297502063153843
EALRESWKTK	10	Unmodified	_EALRESWKTK_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.22796630859375	3	416.562938	1246.66699	0.31941	0.00013305	-0.11476	-4.7804E-05	0.20465	8.525E-05	416.5627891041578	39.134	0.67053	39.134	38.763	39.433	0					56	25	3	0	0	0	0.31837	1	7075	7075		1.9064	0	1	118120			2293	4451	1537	1550	3114	3114					0.05351873454787892
EALTAKLVK	9	Unmodified	_EALTAKLVK_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.68621826171875	2	486.808042	971.601532	-0.29144	-0.00014188	0.61108	0.00029748	0.31964	0.0001556	486.80824208989463	32.895	0.3469	32.895	32.756	33.103	0					17	13	2	0	0	0	0.25996	1	5137	5137		0.45834	0	1	22972	+		2294	10615	1538	1551	3115	3115					0.11459503999765275
EALYGYDYF	9	Unmodified	_EALYGYDYF_					0	0	0		nc|ENSG00000137274|Q86WA6-2|BPHL;ENST00000490918.5_1_6:3118974-3138432:+|nuORF;ENSG00000137274|ENST00000380379|BPHL	nc|ENSG00000137274|Q86WA6-2|BPHL	nc|ENSG00000137274|Q86WA6-2|BPHL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8062744140625	2	570.747847	1139.48114	0.66346	0.00037867	-0.24075	-0.00013741	0.4227	0.00024126	570.7477233850642	80.444	0.37999	80.467	80.299	80.679	0.023605					23	13	2	0	0	0	0.20845	1	19456	19456		21.747	10.923	1	134770			2295	2845	1539	1552	3116	3116					-0.08301948784514934
EAMNMYNNNN	10	Unmodified	_EAMNMYNNNN_					0	0	0			REV__TOX3|p.S371Cfs*14|1|0.06|ENSG00000103460|chr16:52439844-52439845|-/CAAACCCAGC|frameshift_variant	REV__TOX3|p.S371Cfs*14|1|0.06|ENSG00000103460|chr16:52439844-52439845|-/CAAACCCAGC|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.4900817871094	3	405.490345	1213.44921	-0.06163	-2.499E-05	-0.4792	-0.00019431	-0.54083	-0.0002193	405.4902138166445	22.275	0.91524	22.275	22.078	22.993	0					196	78	4	0	0	0	0.47318	2	2052	2052;2130		0.13989	0.13989	1	219760	+		2296	8479	1540	1553	3117;3118	3117					-0.14898007801616586
EAMNMYNNNN	10	Unmodified	_EAMNMYNNNN_					0	0	0			REV__TOX3|p.S371Cfs*14|1|0.06|ENSG00000103460|chr16:52439844-52439845|-/CAAACCCAGC|frameshift_variant	REV__TOX3|p.S371Cfs*14|1|0.06|ENSG00000103460|chr16:52439844-52439845|-/CAAACCCAGC|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.4903259277344	3	405.490345	1213.44921	-0.14983	-6.0753E-05	-0.10956	-4.4426E-05	-0.25939	-0.00010518	405.4902992577257	22.111	0.54838	22.213	22.014	22.562	0.10178					105	47	3	0	0	0	0.47318	1	1982	1982		0.13989	0.13989	1	224660	+		2297	8479	1540	1553	3119	3119					-0.14898007801616586
EAMYHTTLL	9	Unmodified	_EAMYHTTLL_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.766357421875	2	539.765517	1077.51648	0.4327	0.00023355	0.43543	0.00023503	0.86812	0.00046858	539.7657620230185	91.143	0.93408	91.143	90.858	91.793	0					65	33	3	0	0	0	0.22344	1	22864	22864		15.847	2.8047	1	574000	+		2298	9394	1541	1554	3120	3120					-0.019176095283455652
EANAVFDIL	9	Unmodified	_EANAVFDIL_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.25836181640625	2	496.258382	990.502212	0.79673	0.00039538	-0.12323	-6.1154E-05	0.6735	0.00033423	496.2580924732908	84.07	0.49368	84.07	83.749	84.242	0					42	16	4	0	0	0	0.026209	2	20684	20684;20735		53.833	17.706	1	497610			2299	5001	1542	1555	3121;3122	3121					0.006580613150163117
EANAVFDIL	9	Unmodified	_EANAVFDIL_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2586364746094	2	496.258382	990.502212	0.46136	0.00022895	0.096725	4.8001E-05	0.55808	0.00027695	496.25831192122246	84.084	0.42928	84.106	83.866	84.295	0.021744					44	15	4	0	0	0	0.026209	2	20519	20519;20563		53.833	17.789	1	452680			2300	5001	1542	1555	3123;3124	3123					0.006580613150163117
EANQAINPK	9	Unmodified	_EANQAINPK_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000581230.5_1_17:62496043-62497015:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF;nc|ENSG00000108654|P17844-2|DDX5;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7591247558594	2	492.759081	983.503609	-0.24077	-0.00011864	0.15728	7.7499E-05	-0.083493	-4.1142E-05	492.7591116469891	20.658	0.54589	20.658	20.495	21.041	0					128	59	3	0	0	0	0.12214	2	1646	1646;1673		27.629	13.723	1	146240			2301	1168;1601	1543	1556	3125;3126	3125					0.011196954037473006
EANQAINPK	9	Unmodified	_EANQAINPK_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000581230.5_1_17:62496043-62497015:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF;nc|ENSG00000108654|P17844-2|DDX5;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7588806152344	2	492.759081	983.503609	0.13305	6.5562E-05	-0.1213	-5.9769E-05	0.011755	5.7923E-06	492.7589560089747	20.539	0.44766	20.638	20.459	20.907	0.099499					118	51	3	0	0	0	0.098463	1	1513	1513		32.786	18.88	1	147010			2302	1168;1601	1543	1556	3127	3127					0.011196954037473006
EANRAELLF	9	Unmodified	_EANRAELLF_					0	0	0			REV__ENSG00000156869|ENST00000646001|FRRS1	REV__ENSG00000156869|ENST00000646001|FRRS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7846069335938	2	531.782556	1061.55056	0.57893	0.00030786	3.5879	0.001908	4.1668	0.0022158	531.7837414672481	77.962	0.64313	77.996	77.708	78.351	0.034485					42	21	3	0	0	0	0.27929	1	18719	18719		9.3831	0.63772	1	158810	+		2303	9767	1544	1557	3128	3128					0.022245549548870258
EANRVQRF	8	Unmodified	_EANRVQRF_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2714538574219	2	510.27269	1018.53083	-0.40713	-0.00020775	-1.1057	-0.00056421	-1.5128	-0.00077196	510.2720466369122	16.086	0.18147	16.086	16.028	16.21	0					32	21	2	0	0	0	0.53817	1	667	667		2.5775	0	1	22465			2304	4803	1545	1558	3129	3129					0.022302237348071685
EAPGEVLSVL	10	Unmodified	_EAPGEVLSVL_					0	0	0		ENST00000262947.7_1_19:4660702-4664947:-|nuORF	ENST00000262947.7_1_19:4660702-4664947:-|nuORF	ENST00000262947.7_1_19:4660702-4664947:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7815246582031	2	507.279315	1012.54408	0.3239	0.00016431	0.13724	6.9621E-05	0.46114	0.00023393	507.2791826067581	75.687	0.55293	75.731	75.412	75.965	0.044037					66	30	3	0	0	0	0.28643	1	18031	18031		24.021	2.4836	1	3016300			2305	5873	1546	1559	3130	3130					0.03830617003529824
EAPHLDPQIF	10	Unmodified	_EAPHLDPQIF_					0	0	0		ENSG00000173581|ENST00000586790|CCDC106;ENST00000586864.1_1_19:56160443-56160725:+|nuORF	ENSG00000173581|ENST00000586790|CCDC106	ENSG00000173581|ENST00000586790|CCDC106	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.7965698242188	2	583.795663	1165.57677	0.46516	0.00027156	0.95329	0.00055652	1.4184	0.00082808	583.7961998934205	102.21	0.64703	102.21	101.98	102.63	0					52	43	2	0	0	0	0.42901	2	26225	26225;26240		8.7454	0.58988	1	448240			2306	4551	1547	1560	3131;3132	3131					0.000608241263535092
EAPRTQRI	8	Unmodified	_EAPRTQRI_					0	0	0		ENST00000504371.1_1_4:87812740-87813393:-|nuORF;ENST00000295898.7_2_4:87812642-87813393:-|nuORF	ENST00000504371.1_1_4:87812740-87813393:-|nuORF	ENST00000504371.1_1_4:87812740-87813393:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.21600341796875	2	485.775065	969.535577	-0.12023	-5.8404E-05	-0.064149	-3.1162E-05	-0.18438	-8.9566E-05	485.7750439408827	20.112	0.22222	20.207	20.095	20.317	0.095232					28	23	2	0	0	0	0.3576	1	1456	1456		0.79363	0	1	17455			2307	5958	1548	1561	3133	3133					0.0495910787755065
EAPSPDEDDC	10	Unmodified	_EAPSPDEDDC_					0	0	0		ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B	ENSG00000160685|ENST00000535420|ZBTB7B	ENSG00000160685|ENST00000535420|ZBTB7B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7718505859375	2	539.187494	1076.36043	0.01993	1.0746E-05	1.365	0.00073599	1.3849	0.00074674	539.1882088807074	42.878	0.63884	42.968	42.598	43.236	0.089764					42	24	2	0	0	0	0.31731	1	7923	7923		6.2058	5.5154	1	88763			2308	3767	1549	1562	3134	3134					-0.17469144560300265
EAQEIVRH	8	Unmodified	_EAQEIVRH_					0	0	0		nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;PARP1-LIN9|1|fusion	nc|ENSG00000183814|Q5TKA1-3|LIN9;PARP1-LIN9|1|fusion	PARP1-LIN9|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2594299316406	2	491.259248	980.503943	-0.22902	-0.00011251	-0.20028	-9.839E-05	-0.4293	-0.0002109	491.2594703993397	23.919	3.2751	23.919	23.657	26.932	0					623	261	5	0	0	0	0.52924	2	3016	2939;3016		8.5933	3.1541	1	3789000			2309	7660;4946	1550	1563	3135;3136	3136					0.012911151236153273
EAQEIVRH	8	Unmodified	_EAQEIVRH_					0	0	0		nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;PARP1-LIN9|1|fusion	nc|ENSG00000183814|Q5TKA1-3|LIN9;PARP1-LIN9|1|fusion	PARP1-LIN9|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2588806152344	2	491.259248	980.503943	-0.024674	-1.2121E-05	-0.2905	-0.00014271	-0.31518	-0.00015483	491.25944100011304	23.734	2.802	23.833	23.526	26.328	0.099739					550	251	5	0	0	0	0.53026	1	2745	2745		7.9102	1.7044	1	4289800			2310	7660;4946	1550	1563	3137	3137					0.012911151236153273
EAQIHFPT	8	Unmodified	_EAQIHFPT_					0	0	0			REV__nc|ENSG00000159228|P16152-2|CBR1	REV__nc|ENSG00000159228|P16152-2|CBR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7535400390625	2	471.737617	941.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.328	1	31.401	30.901	31.901	0.073782								0	0	0	0.38822	1	4569	4569		4.756	0	1		+		2311	9822	1551	1564	3138	3138					-0.012390746536766528
EARAPSLLGTC	11	Unmodified	_EARAPSLLGTC_					0	0	0			REV__ENST00000284110.1_1_17:13505023-13505188:-|nuORF	REV__ENST00000284110.1_1_17:13505023-13505188:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.281982421875	2	559.287148	1116.55974	0.49162	0.00027496	-0.27571	-0.0001542	0.21591	0.00012075	559.2866057123097	52.71	0.44716	52.778	52.548	52.996	0.067169					25	17	2	0	0	0	0.40796	1	11018	11018		2.4985	0.43874	1	94097	+		2312	11303	1552	1565	3139	3139					0.0061258024893504626
EARDRNLQ	8	Unmodified	_EARDRNLQ_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.27789306640625	2	501.259779	1000.50501	0.29328	0.00014701	1.5142	0.00075901	1.8075	0.00090601	501.26179339378774	71.607	0.59428	71.607	71.239	71.834	0					40	20	3	0	0	0	0.50815	1	16897	16897		11.64	0	1	108120			2313	1120	1553	1566	3140	3140					0.004773294925257687
EARIDEIK	8	Unmodified	_EARIDEIK_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1	REV__ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.26922607421875	2	487.269281	972.52401	-0.33971	-0.00016553	-0.017862	-8.7036E-06	-0.35757	-0.00017423	487.2692015541592	26.72	0.31719	26.72	26.54	26.857	0					50	20	3	0	0	0	0.53614	1	3316	3316		3.9444	0	1	56120	+		2314	9781	1554	1567	3141	3141					0.03664866063559202
EARLCRCLLF	10	Unmodified	_EARLCRCLLF_					0	0	0			REV__ENST00000481948.1_1_16:88104968-88110264:+|nuORF	REV__ENST00000481948.1_1_16:88104968-88110264:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3421020507812	2	612.323011	1222.63147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.653	1	71.712	71.212	72.212	0.058578								0	0	0	0.32971	1	16755	16755		12.241	0.74595	1		+		2315	12096	1555	1568	3142	3142					0.029057964017738414
EARPNQHHR	9	Unmodified	_EARPNQHHR_					0	0	0			REV__ENSG00000179094|ENST00000317276|PER1	REV__ENSG00000179094|ENST00000317276|PER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7888793945312	2	572.78957	1143.56459	0.19703	0.00011286	-1.5427	-0.00088365	-1.3457	-0.0007708	572.7886828203121	16.903	0.16353	16.981	16.885	17.049	0.077806					24	20	2	0	0	0	0.33849	1	749	749		1.6526	0.17072	1	15701	+		2316	10473	1556	1569	3143	3143					-0.0014535477343997627
EARPRRRRARR	11	Unmodified	_EARPRRRRARR_					0	0	0		ENST00000591365.1_1_17:43298722-43299568:-|nuORF	ENST00000591365.1_1_17:43298722-43299568:-|nuORF	ENST00000591365.1_1_17:43298722-43299568:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.27716064453125	3	493.969919	1478.88793	0.27103	0.00013388	-1.0868	-0.00053685	-0.81577	-0.00040296	493.9690936996416	36.132	0.51011	36.213	35.902	36.412	0.081711					26	19	2	0	0	0	0.31101	1	6055	6055		0.40827	0.31342	1	17461			2317	7264	1557	1570	3144	3144					0.1676379606528826
EARPRRRRARR	11	Unmodified	_EARPRRRRARR_					0	0	0		ENST00000591365.1_1_17:43298722-43299568:-|nuORF	ENST00000591365.1_1_17:43298722-43299568:-|nuORF	ENST00000591365.1_1_17:43298722-43299568:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	493.969919	1478.88793	0.27943	0.00013803	-1.4534	-0.00071793	-1.174	-0.0005799	493.96885700463133	36.244	0.36355	36.244	35.969	36.332	0	0.015479	-0.00039814	NaN	0.40827	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21748			2318	7264	1557	1570							0.1676379606528826
EASARQGL	8	Unmodified	_EASARQGL_					0	0	0		ENST00000601886.1_1_19:8428195-8428702:+|nuORF;ENST00000597137.5_1_19:8428195-8436046:+|nuORF	ENST00000601886.1_1_19:8428195-8428702:+|nuORF	ENST00000601886.1_1_19:8428195-8428702:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22802734375	2	416.219591	830.42463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.912	1	38.999	38.499	39.499	0.08688								0	0	0	0.38822	1	6838	6838		5.7604	0	1				2319	7286	1558	1571	3145	3145					0.002634681694871688
EASGLFIQL	9	Unmodified	_EASGLFIQL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.26910400390625	2	489.26875	976.522947	0.36311	0.00017766	-0.12878	-6.3009E-05	0.23433	0.00011465	489.2685736641891	83.186	0.70754	83.186	82.9	83.608	0					47	23	4	0	0	0	0.028398	1	20421	20421		52.268	0	1	318910			2320	4775	1559	1572	3146	3146					0.03374651694673503
EASGLFIQL	9	Unmodified	_EASGLFIQL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2689514160156	2	489.26875	976.522947	0.18987	9.2897E-05	0.12078	5.9092E-05	0.31064	0.00015199	489.2687022161957	83.222	0.67564	83.244	82.851	83.527	0.021744					48	23	3	0	0	0	0.015682	1	20241	20241		61.357	0	1	235810			2321	4775	1559	1572	3147	3147					0.03374651694673503
EASGTLAAL	9	Unmodified	_EASGTLAAL_					0	0	0		nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.22796630859375	2	416.724175	831.433798	0.3217	0.00013406	-0.58344	-0.00024313	-0.26174	-0.00010907	416.7239832363643	39.132	0.56318	39.132	38.87	39.433	0					40	20	3	0	0	0	0.24635	1	7075	7075		10.824	3.5347	1	128920			2322	3580	1560	1573	3148	3148					0.011338167351482298
EASKKYDAV	9	Unmodified	_EASKKYDAV_					0	0	0			REV__ENSG00000139547|ENST00000398138|RDH16	REV__ENSG00000139547|ENST00000398138|RDH16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.71746826171875	2	505.761289	1009.50803	-0.41582	-0.00021031	-1.5986	-0.00080853	-2.0145	-0.0010188	506.2612203134791	40.731	0.34438	40.731	40.593	40.938	0					15	11	2	0	0	0	0.33978	1	7551	7551		1.4819	0	1	26306	+		2323	9347	1561	1574	3149	3149					0.0036515982666287528
EASPVEPQL	9	Unmodified	_EASPVEPQL_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2480163574219	2	485.248015	968.481476	-0.022305	-1.0823E-05	0.111	5.3862E-05	0.088693	4.3038E-05	485.2480641958686	53.225	0.68373	53.225	52.975	53.659	0					74	27	4	0	0	0	0.0046402	3	11295	11252;11295;11341		85.642	33.373	1	1382100			2324	5473	1562	1575	3150;3151;3152	3151					-0.004025290646723079
EASPVEPQL	9	Unmodified	_EASPVEPQL_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2480773925781	2	485.248015	968.481476	0.13872	6.7313E-05	0.012829	6.2251E-06	0.15155	7.3539E-05	485.2479916864863	53.164	0.65244	53.23	52.974	53.627	0.06543					83	31	4	0	0	0	0.0072241	3	11141	11102;11141;11182		75.761	31.903	1	1091400			2325	5473	1562	1575	3153;3154;3155	3154					-0.004025290646723079
EASQSKPPK	9	Unmodified	_EASQSKPPK_					0	0	0			REV__ENST00000521361.5_1_6:112040873-112041254:-|nuORF	REV__ENST00000521361.5_1_6:112040873-112041254:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.21600341796875	2	486.261456	970.50836	-0.53275	-0.00025905	0.30693	0.00014925	-0.22582	-0.00010981	486.26154056740546	20.01	0.26097	20.01	19.888	20.149	0					45	26	2	0	0	0	0.25845	1	1515	1515		2.0598	0	1	30455	+		2326	12299	1563	1576	3156	3156					0.02192579546522211
EASQSKPPK	9	Unmodified	_EASQSKPPK_					0	0	0			REV__ENST00000521361.5_1_6:112040873-112041254:-|nuORF	REV__ENST00000521361.5_1_6:112040873-112041254:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2159729003906	2	486.261456	970.50836	-0.092809	-4.513E-05	0.084397	4.1039E-05	-0.0084122	-4.0905E-06	486.2613959127056	19.908	0.24877	20.003	19.88	20.128	0.095232					51	28	2	0	0	0	0.25845	1	1395	1395		2.0598	0	1	24810	+		2327	12299	1563	1576	3157	3157					0.02192579546522211
EASVLHNLK	9	Unmodified	_EASVLHNLK_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7851257324219	2	505.785099	1009.55564	-0.2182	-0.00011036	0.25373	0.00012834	0.035536	1.7973E-05	505.78511820169615	29.849	0.42586	29.849	29.691	30.117	0					38	19	3	0	0	0	0.30005	1	4246	4246		6.7232	1.4925	1	44099			2328	1188	1564	1577	3158	3158					0.05124858817521272
EASVLHNLK	9	Unmodified	_EASVLHNLK_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.78497314453125	2	505.785099	1009.55564	-0.15619	-7.8997E-05	0.42934	0.00021715	0.27315	0.00013816	505.7851482918207	29.755	0.39646	29.831	29.691	30.088	0.075403					45	23	3	0	0	0	0.30397	1	4097	4097		6.2058	0.97511	1	38764			2329	1188	1564	1577	3159	3159					0.05124858817521272
EATTTHPEV	9	Unmodified	_EATTTHPEV_					0	0	0			REV__ENST00000503270.2_3_4:125384624-125384930:-|nuORF	REV__ENST00000503270.2_3_4:125384624-125384930:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7354736328125	2	492.735271	983.45599	-0.011757	-5.7933E-06	-0.35355	-0.00017421	-0.36531	-0.00018	492.7350410531788	25.053	0.35581	25.149	24.938	25.294	0.096073					42	31	2	0	0	0	0.30005	1	2731	2731		6.7232	0	1	25092	+		2330	12208	1565	1578	3160	3160					-0.036400035870883585
EATTTHPEV	9	Unmodified	_EATTTHPEV_					0	0	0			REV__ENST00000503270.2_3_4:125384624-125384930:-|nuORF	REV__ENST00000503270.2_3_4:125384624-125384930:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	492.735271	983.45599	-0.14645	-7.216E-05	-0.36438	-0.00017954	-0.51083	-0.0002517	492.7349887307729	25.195	0.33665	25.195	25.015	25.352	0	0.022884	-6.0011E-06	NaN	6.7232	48	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27070	+		2331	12208	1565	1578							-0.036400035870883585
EAVGGLQTVR	10	Unmodified	_EAVGGLQTVR_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2879638671875	2	515.288005	1028.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.002	1	36.002	35.502	36.502	0								0	0	0	0.30845	1	6088	6088		16.566	4.3252	1				2332	5461	1566	1579	3161	3161					0.04831957329179204
EAVGGLQTVR	10	Unmodified	_EAVGGLQTVR_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2884521484375	2	515.288005	1028.56146	0.21977	0.00011324	0.48098	0.00024785	0.70075	0.00036109	515.2883133273117	35.855	0.41677	35.934	35.761	36.178	0.078831					24	15	3	0	0	0	0.39071	1	5933	5933		12.873	4.9624	1	59050			2333	5461	1566	1579	3162	3162					0.04831957329179204
EAVGVMATR	9	Unmodified	_EAVGVMATR_					0	0	0		ENST00000398559.6_1_3:69101351-69101438:-|nuORF	ENST00000398559.6_1_3:69101351-69101438:-|nuORF	ENST00000398559.6_1_3:69101351-69101438:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.7127685546875	2	467.244752	932.474951	-0.27272	-0.00012743	0.068899	3.2193E-05	-0.20382	-9.5233E-05	467.24474506943113	32.547	0.32267	32.621	32.514	32.837	0.073784					23	18	2	0	0	0	0.25787	1	4958	4958		2.9952	1.151	1	20396			2334	6353	1567	1580	3163	3163					0.006012545029648209
EAVKVEEEL	9	Unmodified	_EAVKVEEEL_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.27392578125	2	523.274229	1044.53391	-0.24162	-0.00012643	-0.18832	-9.8544E-05	-0.42994	-0.00022498	523.2740815026168	42.997	0.59409	42.997	42.796	43.39	0					61	19	4	0	0	0	0.0042703	2	8195	8195;8241		99.755	21.027	1	561060			2335	2883	1568	1581	3164;3165	3164					0.013420092782780557
EAVKVEEEL	9	Unmodified	_EAVKVEEEL_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2739868164062	2	523.274229	1044.53391	-0.20501	-0.00010728	-0.017197	-8.9989E-06	-0.22221	-0.00011628	523.274108968608	42.944	0.48722	43.034	42.812	43.299	0.089764					59	18	4	0	0	0	0.010235	2	8068	8028;8068		66.457	3.8969	1	444790			2336	2883	1568	1581	3166;3167	3167					0.013420092782780557
EAVLIDPVL	9	Unmodified	_EAVLIDPVL_					0	0	0		ENST00000595115.1_1_19:44030583-44031338:-|nuORF;ENSG00000105755|ENST00000292147|ETHE1	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7868957519531	2	484.786776	967.558998	0.54244	0.00026297	-0.2817	-0.00013656	0.26074	0.0001264	484.78662300411855	80.974	0.38921	80.974	80.813	81.202	0					19	12	2	0	0	0	0.22344	1	19756	19756		15.847	1.0089	1	94887			2337	1488	1569	1582	3168	3168					0.07392108871522396
EAVLIDPVL	9	Unmodified	_EAVLIDPVL_					0	0	0		ENST00000595115.1_1_19:44030583-44031338:-|nuORF;ENSG00000105755|ENST00000292147|ETHE1	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7868347167969	2	484.786776	967.558998	0.32887	0.00015943	0.18148	8.7979E-05	0.51035	0.00024741	484.78675560000505	80.921	0.40314	80.944	80.795	81.198	0.023605					22	13	2	0	0	0	0.22344	1	19606	19606		15.847	1.0089	1	106590			2338	1488	1569	1582	3169	3169					0.07392108871522396
EAVNYLLSHPE	11	Unmodified	_EAVNYLLSHPE_					0	0	0		ENSG00000184227|ENST00000311148|ACOT1	ENSG00000184227|ENST00000311148|ACOT1	ENSG00000184227|ENST00000311148|ACOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.54693603515625	3	424.547065	1270.61937	-0.13003	-5.5203E-05	-0.59146	-0.0002511	-0.72149	-0.00030631	424.5469972523126	20.71	0.92644	20.71	20.43	21.357	0					192	101	3	0	0	0	0.40796	1	1694	1694		1.0136	0	1	93326			2339	4965	1570	1583	3170	3170					-0.005118255360457624
EAVSFGDHL	9	Unmodified	_EAVSFGDHL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-3|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2804260253906	2	487.732532	973.45051	0.038638	1.8845E-05	-0.0065372	-3.1884E-06	0.032101	1.5656E-05	487.73252143906285	49.196	0.50686	49.196	48.945	49.452	0					36	17	3	0	0	0	0.25174	1	10020	10020		7.2892	2.0586	1	146540			2340	1389	1571	1584	3171	3171					-0.03727682378894315
EAVVDRGGTR	10	Unmodified	_EAVVDRGGTR_					0	0	0		nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10;ENST00000461456.5_1_2:162565258-162730321:+|nuORF;nc|ENSG00000144290|Q6U841-4|SLC4A10;ENST00000493021.5_1_2:162567177-162757603:+|nuORF	nc|ENSG00000144290|Q6U841-2|SLC4A10	nc|ENSG00000144290|Q6U841-2|SLC4A10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2806396484375	2	530.280712	1058.54687	0.17077	9.0558E-05	-0.31004	-0.00016441	-0.13927	-7.385E-05	530.2804973240821	20.035	0.36584	20.13	20.007	20.373	0.095232					75	39	3	0	0	0	0.41617	1	1428	1428		10.151	1.4052	1	56505			2341	3201	1572	1585	3172	3172					0.01993885181036603
EAVVEYVF	8	Unmodified	_EAVVEYVF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.24237060546875	2	478.242201	954.469849	0.061559	2.944E-05	0.062961	3.0111E-05	0.12452	5.955E-05	478.24210436106335	74.34	0.46317	74.34	74.171	74.635	0					33	16	3	0	0	0	0.14683	1	17731	17731		46.921	6.4723	1	222990			2342	5280	1573	1586	3173	3173					-0.009207260879975365
EAVVEYVF	8	Unmodified	_EAVVEYVF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2419128417969	2	478.242201	954.469849	0.14901	7.1261E-05	-0.063697	-3.0463E-05	0.085309	4.0798E-05	478.2421180097262	74.366	0.43672	74.415	74.156	74.593	0.048546					24	15	2	0	0	0	0.10563	1	17564	17564		53.576	6.6547	1	152500			2343	5280	1573	1586	3174	3174					-0.009207260879975365
EAVVFEAVL	9	Unmodified	_EAVVFEAVL_					0	0	0		nc|ENSG00000184887|Q96KE9-2|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6	nc|ENSG00000184887|Q96KE9-2|BTBD6	nc|ENSG00000184887|Q96KE9-2|BTBD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7711181640625	2	488.771126	975.527698	0.55077	0.0002692	-0.0093158	-4.5533E-06	0.54146	0.00026465	488.7710166981736	82.054	0.61771	82.054	81.836	82.454	0					46	21	3	0	0	0	0.0045547	2	20074	20074;20122		88.904	38.049	1	429090			2344	93	1574	1587	3175;3176	3175					0.038955358374209936
EAVVFEAVL	9	Unmodified	_EAVVFEAVL_					0	0	0		nc|ENSG00000184887|Q96KE9-2|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6	nc|ENSG00000184887|Q96KE9-2|BTBD6	nc|ENSG00000184887|Q96KE9-2|BTBD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7713317871094	2	488.771126	975.527698	0.22509	0.00011002	0.26473	0.00012939	0.48982	0.00023941	488.77116797118924	82.036	0.53088	82.058	81.846	82.377	0.021866					47	18	3	0	0	0	0.0025191	2	19909	19909;19964		112.59	61.738	1	535220			2345	93	1574	1587	3177;3178	3177					0.038955358374209936
ECDLETRKKM	10	Unmodified	_ECDLETRKKM_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;ENSG00000173040|ENST00000344408|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8038940429688	2	626.804848	1251.59514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.93	1	103.96	103.46	104.46	0.03791								0	0	0	0.33892	1	26559	26559		1.4819	0.8804	1				2346	4524	1575	1588	3179	3179					-0.02059125285609298
ECFVKDKLNF	10	Unmodified	_ECFVKDKLNF_					0	0	0			REV__UBE2J2|p.L159Ffs*3|1|0.15|ENSG00000160087|chr1:1256062-1256063|AT/-|frameshift_variant	REV__UBE2J2|p.L159Ffs*3|1|0.15|ENSG00000160087|chr1:1256062-1256063|AT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.274169921875	2	621.812999	1241.61144	0.34768	0.00021619	-3.0322	-0.0018855	-2.6845	-0.0016693	621.810704121632	67.655	0.85802	67.718	67.501	68.359	0.063507					51	30	2	0	0	0	0.31643	1	15565	15565		9.3831	0	1	173140	+		2347	9840	1576	1589	3180	3180					0.00030323942814902693
ECGGWESMACP	11	Unmodified	_ECGGWESMACP_					0	0	0			REV__ENST00000374928.7_1_X:56259132-56259709:+|nuORF	REV__ENST00000374928.7_1_X:56259132-56259709:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.3748168945312	2	585.206652	1168.39875	0.2337	0.00013676	1.9481	0.00114	2.1818	0.0012768	585.2081304898228	28.157	0.32635	28.24	28.05	28.376	0.082134					36	18	3	0	0	0	0.31095	1	3595	3595		1.1933	0.66858	1	45163	+		2348	11630	1577	1590	3181	3181					-0.17871253450994118
ECGGWESMACP	11	Unmodified	_ECGGWESMACP_					0	0	0			REV__ENST00000374928.7_1_X:56259132-56259709:+|nuORF	REV__ENST00000374928.7_1_X:56259132-56259709:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	585.206652	1168.39875	0.068174	3.9896E-05	1.6577	0.00097013	1.7259	0.00101	585.2081020930791	28.216	0.28853	28.216	28.073	28.362	0	-0.011866	-0.00026022	NaN	1.1933	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49789	+		2349	11630	1577	1590							-0.17871253450994118
ECHPKPTQR	9	Unmodified	_ECHPKPTQR_					0	0	0		UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2	UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant	UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2715454101562	2	548.271832	1094.52911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.755	1	14.755	14.255	15.255	0								0	0	0	0.28807	1	430	430		1.4819	0.68827	1				2350	2335	1578	1591	3182	3182					-0.014371533454777818
ECILFPFSF	9	Unmodified	_ECILFPFSF_					0	0	0			REV__ENST00000397381.4_1_19:15947062-15947119:+|nuORF	REV__ENST00000397381.4_1_19:15947062-15947119:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7670288085938	2	551.767529	1101.5205	0.46866	0.00025859	-0.1348	-7.4376E-05	0.33386	0.00018421	551.767466315195	101.12	0.4977	101.12	100.91	101.4	0					41	27	2	0	0	0	0.26684	1	25889	25889		10.824	0	1	71083	+		2351	11731	1579	1592	3183	3183					-0.026195200346592173
ECLEFIAIIYG	11	Unmodified	_ECLEFIAIIYG_					0	0	0		ENSG00000114349|ENST00000232461|GNAT1	ENSG00000114349|ENST00000232461|GNAT1	ENSG00000114349|ENST00000232461|GNAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.57177734375	3	424.21778	1269.63151	0.072682	3.0833E-05	3.9922	0.0016936	4.0649	0.0017244	424.21890686793677	45.838	0.56844	45.838	45.53	46.098	0					41	19	3	0	0	0	0.31076	1	9063	9063		4.4062	1.0865	1	95444			2352	1838	1580	1593	3184	3184					0.007480748827674688
ECLFYPALW	9	Unmodified	_ECLFYPALW_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2896728515625	2	571.272978	1140.5314	0.31101	0.00017767	3.6105	0.0020626	3.9215	0.0022402	571.2745943662427	52.736	0.21611	52.803	52.695	52.911	0.067173					11	8	2	0	0	0	0.2796	1	11037	11037		9.3474	2.0582	1	44105			2353	4080	1581	1594	3185	3185					-0.03324117660372394
ECLNSYESKF	10	Unmodified	_ECLNSYESKF_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.5144958496094	3	407.181506	1218.52269	-0.045354	-1.8467E-05	3.1757	0.0012931	3.1304	0.0012746	407.1832599459199	35.466	0.19677	35.545	35.457	35.653	0.078831					10	6	2	0	0	0	0.31794	1	5820	5820		4.1895	1.1943	1	21705	+		2354	9352	1582	1595	3186	3186					-0.07783136087505227
ECPSECGPQV	10	Unmodified	_ECPSECGPQV_					0	0	0			REV__ENSG00000212901|ENST00000391588|KRTAP3-1	REV__ENSG00000212901|ENST00000391588|KRTAP3-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7523803710938	2	524.707342	1047.40013	-0.16231	-8.5165E-05	-2.0857	-0.0010944	-2.248	-0.0011796	524.7064213034865	29.141	0.5274	29.141	28.823	29.351	0					46	31	2	0	0	0	0.31838	1	4001	4001		1.4819	0.15237	1	24189	+	+	2355	7853	1583	1596	3187	3187					-0.12167296090569835
ECTALVYAL	9	Unmodified	_ECTALVYAL_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7494812011719	2	491.749336	981.484119	0.35689	0.0001755	-0.032605	-1.6033E-05	0.32428	0.00015947	491.74926536111747	75.958	0.77863	75.997	75.86	76.639	0.039238					64	41	2	0	0	0	0.17247	1	18146	18146		21.747	0	1	1825900			2356	7443	1584	1597	3188	3188					-0.007363969313814778
ECWEFYSAI	9	Unmodified	_ECWEFYSAI_					0	0	0		ENST00000374024.3_1_1:27721341-27721638:+|nuORF	ENST00000374024.3_1_1:27721341-27721638:+|nuORF	ENST00000374024.3_1_1:27721341-27721638:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2410888671875	2	574.241875	1146.4692	0.061517	3.5326E-05	-0.41972	-0.00024102	-0.3582	-0.00020569	574.241632424377	39.34	0.49819	39.34	39.162	39.661	0					31	18	3	0	0	0	0.25979	2	7077	7077;7130		11.64	5.9084	1	91678			2357	6230	1585	1598	3189;3190	3189					-0.09817888799352659
ECWEFYSAI	9	Unmodified	_ECWEFYSAI_					0	0	0		ENST00000374024.3_1_1:27721341-27721638:+|nuORF	ENST00000374024.3_1_1:27721341-27721638:+|nuORF	ENST00000374024.3_1_1:27721341-27721638:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2416381835938	2	574.241875	1146.4692	0.17107	9.8233E-05	-0.67772	-0.00038918	-0.50666	-0.00029094	574.2416892609018	39.286	0.35863	39.375	39.154	39.513	0.088562					33	15	3	0	0	0	0.25979	2	6936	6936;6989		11.64	3.7301	1	67763			2358	6230	1585	1598	3191;3192	3191					-0.09817888799352659
EDALYFPVL	9	Unmodified	_EDALYFPVL_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7766723632812	2	533.776408	1065.53826	0.39902	0.00021299	0.64682	0.00034526	1.0458	0.00055825	533.7768061065881	79.163	0.70161	79.163	78.782	79.483	0					39	18	3	0	0	0	0.20367	1	19190	19190		18.135	4.6271	1	324370			2359	4770	1586	1599	3193	3193					0.008115184918551677
EDALYFPVL	9	Unmodified	_EDALYFPVL_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.777099609375	2	533.776408	1065.53826	0.44661	0.00023839	0.60025	0.0003204	1.0469	0.00055879	533.7767850112565	79.104	0.52979	79.132	78.909	79.439	0.027817					34	18	2	0	0	0	0.25209	1	19022	19022		12.532	0.89125	1	316770			2360	4770	1586	1599	3194	3194					0.008115184918551677
EDALYFPVL	9	Unmodified	_EDALYFPVL_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	533.776408	1065.53826	0.44661	0.00023839	0.60025	0.0003204	1.0469	0.00055879	533.7767850112565	79.104	0.52979	79.132	78.909	79.439	0.027817	-0.015819	-2.4818E-05	NaN	18.135	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316770			2361	4770	1586	1599							0.008115184918551677
EDASRWTV	8	Unmodified	_EDASRWTV_					0	0	0			REV__nc|ENSG00000113971|Q7Z494-2|NPHP3	REV__nc|ENSG00000113971|Q7Z494-2|NPHP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.74603271484375	2	482.230156	962.445759	-0.098722	-4.7607E-05	0.098551	4.7524E-05	-0.00017025	-8.21E-08	482.2300484302669	36.052	0.40835	36.052	35.944	36.352	0					23	15	2	0	0	0	0.53614	1	6149	6149		3.9444	0	1	33858	+		2362	8756	1587	1600	3195	3195					-0.03696566521648492
EDCFLVLW	8	Unmodified	_EDCFLVLW_					0	0	0			REV__DYNC1H1-HSP90AA1|1|fusion	REV__DYNC1H1-HSP90AA1|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7894287109375	2	512.744053	1023.47355	0.27276	0.00013986	2.3553	0.0012077	2.6281	0.0013475	512.745560118596	94.865	0.14284	94.904	94.792	94.935	0.038872					7	5	2	0	0	0	0.35759	1	23804	23804		11.114	0.93107	1	35716	+		2363	7902	1588	1601	3196	3196					-0.037243795857989426
EDDDQDQFL	9	Unmodified	_EDDDQDQFL_					0	0	0			REV__nc|ENSG00000183718|Q96A61-2|TRIM52	REV__nc|ENSG00000183718|Q96A61-2|TRIM52	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2479248046875	2	562.722558	1123.43056	0.38127	0.00021455	2.4704	0.0013901	2.8517	0.0016047	562.7238444861358	94.61	0.2963	94.61	94.451	94.747	0					21	12	2	0	0	0	0.25746	1	23887	23887		3.2813	0.97858	1	71799	+		2364	10607	1589	1602	3197	3197					-0.12621522900167292
EDDDQDQFL	9	Unmodified	_EDDDQDQFL_					0	0	0			REV__nc|ENSG00000183718|Q96A61-2|TRIM52	REV__nc|ENSG00000183718|Q96A61-2|TRIM52	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	562.722558	1123.43056	0.35286	0.00019857	1.7545	0.00098731	2.1074	0.0011859	562.7238857675878	94.57	0.3654	94.608	94.426	94.792	0.038086	-0.0013287	-0.00050724	NaN	3.2813	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84138	+		2365	10607	1589	1602							-0.12621522900167292
EDDEDHFPYS	10	Unmodified	_EDDEDHFPYS_					0	0	0		nc|ENSG00000130675|P50219-2|MNX1;ENSG00000130675|ENST00000252971|MNX1	nc|ENSG00000130675|P50219-2|MNX1	nc|ENSG00000130675|P50219-2|MNX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2332153320312	2	627.23329	1252.45203	-0.12974	-8.138E-05	-0.29112	-0.0001826	-0.42087	-0.00026398	627.2335190930465	34.493	2.3072	34.493	33.739	36.047	0					225	87	4	0	0	0	0.46656	1	5552	5552		1.6526	0	1	171510			2366	2479	1590	1603	3198	3198					-0.16410137871457664
EDDLALAAL	9	Unmodified	_EDDLALAAL_					0	0	0			REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF	REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.74249267578125	2	465.742565	929.470577	-0.013957	-6.5004E-06	0.87091	0.00040562	0.85695	0.00039912	465.74281958656996	59.493	0.71699	59.566	59.271	59.988	0.072338					39	27	2	0	0	0	0.22344	1	13139	13139		15.847	0	1	142120	+		2367	12535	1591	1604	3199	3199					0.0030206856106360647
EDDLALAAL	9	Unmodified	_EDDLALAAL_					0	0	0			REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF	REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	465.742565	929.470577	0.24487	0.00011405	0.18115	8.4368E-05	0.42602	0.00019841	465.74252680470784	59.554	0.68438	59.554	59.36	60.045	0	-0.0055764	-0.00026765	NaN	15.847	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193950	+		2368	12535	1591	1604							0.0030206856106360647
EDDLALAAL	9	Unmodified	_EDDLALAAL_					0	0	0			REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF	REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	465.742565	929.470577	-0.013957	-6.5004E-06	0.87091	0.00040562	0.85695	0.00039912	465.74281958656996	59.493	0.71699	59.566	59.271	59.988	0.072338	0.0055764	0.00037485	NaN	15.847	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142120	+		2369	12535	1591	1604							0.0030206856106360647
EDDPAGHH	8	Unmodified	_EDDPAGHH_					0	0	0		nc|ENSG00000100842|O43281-3|EFS;nc|ENSG00000100842|O43281-2|EFS;EFS|p.E544Tfs*14|1|0.19|ENSG00000100842|chr14:23357281-23357282|TC/-|frameshift_variant;ENSG00000100842|ENST00000216733|EFS	nc|ENSG00000100842|O43281-3|EFS	nc|ENSG00000100842|O43281-3|EFS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.1763916015625	2	439.175381	876.336209	0.61415	0.00026972	1.6438	0.00072192	2.2579	0.00099164	439.1759829655801	91.79	0.56258	91.79	91.602	92.164	0					40	20	3	0	0	0	0.53345	1	23067	23067		5.7604	3.1829	1	128870			2370	309	1592	1605	3200	3200					-0.10690572140993027
EDDPAGHH	8	Unmodified	_EDDPAGHH_					0	0	0		nc|ENSG00000100842|O43281-3|EFS;nc|ENSG00000100842|O43281-2|EFS;EFS|p.E544Tfs*14|1|0.19|ENSG00000100842|chr14:23357281-23357282|TC/-|frameshift_variant;ENSG00000100842|ENST00000216733|EFS	nc|ENSG00000100842|O43281-3|EFS	nc|ENSG00000100842|O43281-3|EFS	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	439.175381	876.336209	0.20227	8.8834E-05	1.927	0.00084628	2.1292	0.00093511	439.176158077628	91.729	0.57601	91.766	91.613	92.19	0.03653	-0.012242	7.2852E-05	NaN	5.7604	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178700			2371	309	1592	1605							-0.10690572140993027
EDDSEEEFFD	10	Unmodified	_EDDSEEEFFD_					0	0	0		VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7683715820312	2	631.222588	1260.43062	-0.10967	-6.9228E-05	2.6653	0.0016824	2.5556	0.0016131	631.7257633501408	59.077	0.58471	59.077	58.846	59.43	0					35	21	2	0	0	0	0.31803	1	13071	13071		3.2813	1.4371	1	259460			2372	5332	1593	1606	3201	3201					-0.1891756769082349
EDDSEEEFFD	10	Unmodified	_EDDSEEEFFD_					0	0	0		VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.7686157226562	2	631.222588	1260.43062	0.18963	0.0001197	2.3818	0.0015035	2.5715	0.0016232	631.7256990056866	58.935	0.59597	59.006	58.804	59.4	0.070477					32	23	2	0	0	0	0.31803	1	12885	12885		3.2813	1.7994	1	135730			2373	5332	1593	1606	3202	3202					-0.1891756769082349
EDDWKGSW	8	Unmodified	_EDDWKGSW_					0	0	0		ENST00000264784.7_1_4:9987396-9998539:-|nuORF	ENST00000264784.7_1_4:9987396-9998539:-|nuORF	ENST00000264784.7_1_4:9987396-9998539:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.24658203125	2	511.714339	1021.41412	-0.16184	-8.2816E-05	-0.24765	-0.00012672	-0.40949	-0.00020954	511.7142193059841	26.911	0.18883	26.911	26.797	26.986	0					15	11	2	0	0	0	0.3576	1	3384	3384		1.8442	1.1539	1	12015			2374	5890	1594	1607	3203	3203					-0.09572559275602543
EDEFCKKKI	9	Unmodified	_EDEFCKKKI_					0	0	0			REV__tr|U7SU50|U7SU50_FUSNUYjbRproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01100PE=4SV=1	REV__tr|U7SU50|U7SU50_FUSNUYjbRproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01100PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7760620117188	2	570.291899	1138.56925	-0.061043	-3.4812E-05	2.2872	0.0013044	2.2261	0.0012696	570.7943153082869	33.684	0.96572	33.684	33.328	34.294	0					66	35	3	0	0	0	0.25875	1	5417	5417		1.8442	0.19162	1	37543	+		2375	13185	1595	1608	3204	3204					0.0055034853444340115
EDEFSDEEDF	10	Unmodified	_EDEFSDEEDF_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7264404296875	2	631.222588	1260.43062	0.32894	0.00020764	1.8341	0.0011577	2.163	0.0013654	631.223695202054	63.34	0.53627	63.34	63.142	63.679	0					28	18	2	0	0	0	0.46608	1	14403	14403		1.4819	0.28856	1	88672			2376	713	1596	1609	3205	3205					-0.18917567690846226
EDEFSDEEDF	10	Unmodified	_EDEFSDEEDF_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	631.222588	1260.43062	0.40384	0.00025492	1.8039	0.0011387	2.2077	0.0013936	631.2237735279792	63.18	0.081104	63.253	63.209	63.29	0.072701	-0.04342	-3.0235E-05	NaN	1.4819	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115470			2377	713	1596	1609							-0.18917567690846226
EDEMSMKESN	10	Unmodified	_EDEMSMKESN_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.2298583984375	2	600.231378	1198.4482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.64	1	116.65	116.15	117.15	0.013062								0	0	0	0.33984	1	29571	29571		0.40072	0	1		+		2378	8404	1597	1610	3206	3206					-0.14308266961188565
EDENLCDDPLP	11	Unmodified	_EDENLCDDPLP_					0	0	0		ENST00000584601.5_1_17:37844507-37851286:+|nuORF;ENST00000584014.5_1_17:37844516-37851033:+|nuORF	ENST00000584601.5_1_17:37844507-37851286:+|nuORF	ENST00000584601.5_1_17:37844507-37851286:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8170776367188	2	630.25845	1258.50235	-0.2497	-0.00015738	0.77295	0.00048716	0.52325	0.00032978	630.7605173008533	58.754	0.53898	58.754	58.416	58.955	0					35	18	3	0	0	0	0.31096	1	12892	12892		1.0715	0	1	188260			2379	7232	1598	1611	3207	3207					-0.11656351537953924
EDENRKRSL	9	Unmodified	_EDENRKRSL_					0	0	0			REV__ENST00000480540.1_1_14:59261390-59261744:+|nuORF	REV__ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3262939453125	2	573.796726	1145.5789	0.27512	0.00015786	-1.0181	-0.00058418	-0.74297	-0.00042631	574.297072844266	95.924	0.19891	95.924	95.872	96.07	0					12	12	2	0	0	0	0.25644	1	24325	24325		3.9444	0.66309	1	31817	+		2380	8155	1599	1612	3208	3208					0.011932528641864337
EDERSLPK	8	Unmodified	_EDERSLPK_					0	0	0			REV__nc|ENSG00000030419|Q9UKS7-3|IKZF2	REV__nc|ENSG00000030419|Q9UKS7-3|IKZF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2510681152344	2	487.251089	972.487624	-0.23157	-0.00011283	-0.020574	-1.0025E-05	-0.25214	-0.00012286	487.2510295339257	25.518	0.40487	25.61	25.407	25.812	0.091507					49	33	2	0	0	0	0.53894	1	2880	2880		2.0598	0.21551	1	40433	+		2381	8010	1600	1613	3209	3209					0.0002798916685833319
EDERSQDRGGE	11	Unmodified	_EDERSQDRGGE_					0	0	0			REV__ENST00000486499.1_1_16:31094827-31095232:-|nuORF	REV__ENST00000486499.1_1_16:31094827-31095232:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.2711791992188	2	639.271269	1276.52799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.337	1	34.413	33.913	34.913	0.076244								0	0	0	0.34212	1	5467	5467		0	0	1		+		2382	12123	1601	1614	3210	3210					-0.09921740971367399
EDESEIEEFY	10	Unmodified	_EDESEIEEFY_					0	0	0		nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.2534790039062	2	645.25643	1288.49831	0.43396	0.00028002	-1.2959	-0.00083617	-0.86191	-0.00055615	646.260616459707	98.361	0.5895	98.403	98.168	98.758	0.041931					106	31	4	0	0	0	0.41688	1	24919	24919		10.074	1.3285	1	403690			2383	1111	1602	1615	3211	3211					-0.13440117760023895
EDESEIEEFY	10	Unmodified	_EDESEIEEFY_					0	0	0		nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	645.25643	1288.49831	0.51565	0.00033272	-1.4161	-0.00091374	-0.90045	-0.00058102	645.2526696681305	98.421	0.67015	98.421	98.116	98.786	0	0.0090558	-8.3166E-05	NaN	10.074	109	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451200			2384	1111	1602	1615							-0.13440117760023895
EDESSSIAVL	10	Unmodified	_EDESSSIAVL_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.805419921875	2	525.253494	1048.49243	-0.022722	-1.1935E-05	0.74851	0.00039316	0.72579	0.00038122	525.2537384536517	58.926	1.3726	58.926	58.327	59.7	0					71	50	2	0	0	0	0.31731	1	12900	12900		6.2058	0	1	164740	+		2385	9004	1603	1616	3212	3212					-0.029871714810269623
EDFFLEPE	8	Unmodified	_EDFFLEPE_					0	0	0		EIF2B5|p.H656P|1|0.25|ENSG00000145191|chr3:184144196-184144196|A/C|missense_variant	EIF2B5|p.H656P|1|0.25|ENSG00000145191|chr3:184144196-184144196|A/C|missense_variant	EIF2B5|p.H656P|1|0.25|ENSG00000145191|chr3:184144196-184144196|A/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.241455078125	2	513.226748	1024.43894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.806	1	29.882	29.382	30.382	0.075403								0	0	0	0.38822	1	4118	4118		2.5775	0	1				2386	313	1604	1617	3213	3213					-0.07229924192893122
EDFIETLKSI	10	Unmodified	_EDFIETLKSI_					0	0	0		tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8141479492188	2	597.816261	1193.61797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.282	1	39.371	38.871	39.871	0.088562								0	0	0	0.33784	1	6950	6950		2.7352	0	1				2387	13601	1605	1618	3214	3214					0.02890540375187811
EDFIVWELD	9	Unmodified	_EDFIVWELD_					0	0	0			REV__ENST00000465703.5_1_6:31929724-31930734:+|nuORF	REV__ENST00000465703.5_1_6:31929724-31930734:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.8019409179688	2	583.274229	1164.53391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.45	1	100.5	99.996	101	0.042839								0	0	0	0.27613	1	25529	25529		3.9444	0.3479	1		+		2388	10941	1606	1619	3215	3215					-0.0417799072172329
EDFLGFMNEF	10	Unmodified	_EDFLGFMNEF_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.7677001953125	2	624.765714	1247.51688	0.079782	4.9845E-05	3.1017	0.0019378	3.1815	0.0019877	624.7674456407821	77.108	0.44706	77.108	76.807	77.254	0					58	15	5	0	0	0	0.36006	1	18588	18588		16.149	0.90062	1	754370			2389	5284	1607	1620	3216	3216					-0.09698234599181887
EDFTLQIW	8	Unmodified	_EDFTLQIW_					0	0	0			REV__ENST00000512711.1_1_4:157757122-157795072:-|nuORF	REV__ENST00000512711.1_1_4:157757122-157795072:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3187255859375	2	526.258382	1050.50221	0.34459	0.00018134	-0.12146	-6.3918E-05	0.22313	0.00011743	526.2581286491027	77.696	0.35486	77.731	77.587	77.942	0.034485					15	11	2	0	0	0	0.34111	1	18595	18595		26.884	9.9414	1	51312	+		2390	9519	1608	1621	3217	3217					-0.021019386850184674
EDFVLNKR	8	Unmodified	_EDFVLNKR_					0	0	0		tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7789611816406	2	510.777274	1019.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.787	1	31.86	31.36	32.36	0.073782								0	0	0	0.38822	1	4705	4705		2.3027	0	1				2391	13482	1609	1622	3218	3218					0.031005723004795982
EDGGLSHGLEL	11	Unmodified	_EDGGLSHGLEL_					0	0	0		C2CD3|p.P1350S|1|0.17|ENSG00000168014|chr11:74078670-74078670|G/A|missense_variant	C2CD3|p.P1350S|1|0.17|ENSG00000168014|chr11:74078670-74078670|G/A|missense_variant	C2CD3|p.P1350S|1|0.17|ENSG00000168014|chr11:74078670-74078670|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7710571289062	2	563.772385	1125.53022	0.47842	0.00026972	2.373	0.0013378	2.8514	0.0016075	563.7729819194661	91.959	0.77972	91.959	91.707	92.487	0					39	28	2	0	0	0	0.30229	1	23177	23177		19.362	0.98885	1	309580			2392	95	1610	1623	3219	3219					-0.027526604955710354
EDHANGAR	8	Unmodified	_EDHANGAR_					0	0	0			REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8823547363281	2	435.196648	868.378742	0.73196	0.00031855	-0.22382	-9.7406E-05	0.50814	0.00022114	435.19661436693434	93.111	1.2136	93.111	92.634	93.848	0					60	46	2	0	0	0	0.3576	1	23558	23558		2.3027	2.3027	1	319270	+		2393	8349	1611	1624	3220	3220					-0.06071177012756834
EDHANGAR	8	Unmodified	_EDHANGAR_					0	0	0			REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8824462890625	2	435.196648	868.378742	0.3971	0.00017281	0.53005	0.00023068	0.92715	0.00040349	435.19702014052	92.976	1.0995	93.013	92.155	93.255	0.037369					55	41	2	0	0	0	0.3576	1	23170	23170		2.3027	1.5091	1	198640	+		2394	8349	1611	1624	3221	3221					-0.06071177012756834
EDKLLRIKI	9	Unmodified	_EDKLLRIKI_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2816162109375	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.433	1	32.433	31.933	32.933	0								0	0	0	0.29233	1	5020	5020		0.6015	0	1				2395	2900	1612	1625	3222	3222					0.14910839845219925
EDKNWALA	8	Unmodified	_EDKNWALA_					0	0	0			REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2840881347656	2	473.735074	945.455596	-0.73586	-0.0003486	-0.54217	-0.00025684	-1.278	-0.00060545	473.73489054808607	41.249	0.6413	41.249	40.967	41.609	0					38	23	2	0	0	0	0.35759	1	7643	7643		9.3474	1.4373	1	36659	+		2396	13001	1613	1626	3223	3223					-0.01931378516303539
EDKNWALA	8	Unmodified	_EDKNWALA_					0	0	0			REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2838134765625	2	473.735074	945.455596	-0.59135	-0.00028014	-0.1811	-8.5796E-05	-0.77246	-0.00036594	473.7349257084108	41.125	0.63979	41.215	40.981	41.621	0.089642					31	24	2	0	0	0	0.3576	1	7527	7527		2.5775	0	1	30482	+		2397	13001	1613	1626	3224	3224					-0.01931378516303539
EDLIAYLK	8	Unmodified	_EDLIAYLK_					0	0	0		CON__P62894	CON__P62894	CON__P62894	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7711486816406	2	482.771126	963.527698	0.11385	5.4966E-05	0.072202	3.4857E-05	0.18606	8.9823E-05	482.771059865088	62.424	0.73714	62.424	62.175	62.912	0					58	26	3	0	0	0	0.23148	2	14104	14060;14104		39.957	5.8549	1	632480		+	2398	224	1614	1627	3225;3226	3226					0.044475358374370444
EDLIAYLK	8	Unmodified	_EDLIAYLK_					0	0	0		CON__P62894	CON__P62894	CON__P62894	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7709655761719	2	482.771126	963.527698	0.08098	3.9095E-05	0.099021	4.7804E-05	0.18	8.6899E-05	482.7710765481618	62.282	0.87836	62.355	62.056	62.934	0.073242					58	30	3	0	0	0	0.23148	2	13942	13893;13942		39.957	5.8549	1	576720		+	2399	224	1614	1627	3227;3228	3228					0.044475358374370444
EDLKNAVSVHH	11	Unmodified	_EDLKNAVSVHH_					0	0	0		ENST00000518315.5_1_8:18393255-18632402:-|nuORF;nc|ENSG00000156011|Q9NYI0-3|PSD3;PSD3|p.H1010Lfs*13|1|0.07|ENSG00000156011|chr8:18535863-18535864|-/TGGTCATGGAGCAAAATAGG|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3	ENST00000518315.5_1_8:18393255-18632402:-|nuORF	ENST00000518315.5_1_8:18393255-18632402:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8823547363281	3	416.882559	1247.62585	0.21702	9.0472E-05	-0.053988	-2.2507E-05	0.16303	6.7965E-05	416.88242955209114	47.222	0.38293	47.305	47.124	47.507	0.083096					33	14	3	0	0	0	0.38984	1	9317	9317		3.3557	0	1	133470			2400	3607	1615	1628	3229	3229					0.011941124153281635
EDLLELSHLIW	11	Unmodified	_EDLLELSHLIW_					0	0	0			REV__ENST00000555372.5_1_14:65453620-65488730:+|nuORF	REV__ENST00000555372.5_1_14:65453620-65488730:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.9132385253906	3	456.578365	1366.71327	0.74741	0.00034125	0.25815	0.00011786	1.0056	0.00045912	456.57852815928845	65.193	2.4769	65.193	64.92	67.397	0					258	92	5	0	0	0	0.38613	2	15136	15136;15348		7.4771	1.4164	1	5953400	+		2401	11100	1616	1629	3230;3231	3230					0.0445789356624573
EDMKKPLL	8	Unmodified	_EDMKKPLL_					0	0	0			REV__nc|ENSG00000168710|O43865-2|AHCYL1	REV__nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.68212890625	2	487.272978	972.531403	-0.18072	-8.806E-05	3.6354	0.0017714	3.4547	0.0016834	487.27463179988547	33.981	0.26837	33.981	33.854	34.123	0					13	9	2	0	0	0	0.3576	1	5442	5442		2.5775	1.8871	1	15510	+		2402	9805	1617	1630	3232	3232					0.044038823396363114
EDMLEGHSRE	10	Unmodified	_EDMLEGHSRE_					0	0	0		ENSG00000180787|ENST00000318833|ZFP3	ENSG00000180787|ENST00000318833|ZFP3	ENSG00000180787|ENST00000318833|ZFP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7590942382812	2	601.758952	1201.50335	0.48217	0.00029015	-0.78816	-0.00047428	-0.30599	-0.00018413	601.7585068933812	94.623	0.28108	94.623	94.466	94.747	0					19	11	2	0	0	0	0.44496	1	23930	23930		5.7319	0	1	59336			2403	4816	1618	1631	3233	3233					-0.08934092378399328
EDMLEGHSRE	10	Unmodified	_EDMLEGHSRE_					0	0	0		ENSG00000180787|ENST00000318833|ZFP3	ENSG00000180787|ENST00000318833|ZFP3	ENSG00000180787|ENST00000318833|ZFP3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	601.758952	1201.50335	0.42129	0.00025351	-1.5308	-0.00092119	-1.1095	-0.00066768	601.757996424871	94.615	0.26505	94.653	94.477	94.742	0.038086	0.01524	-0.00025966	NaN	5.7319	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61024			2404	4816	1618	1631							-0.08934092378399328
EDMTPLNL	8	Unmodified	_EDMTPLNL_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2333984375	2	466.723318	931.432083	0.49768	0.00023228	-0.55524	-0.00025914	-0.057558	-2.6864E-05	466.7229735686995	64.266	0.77335	64.266	63.946	64.719	0					39	26	2	0	0	0	0.53118	1	14731	14731		7.2892	2.96	1	85818			2405	433	1619	1632	3234	3234					-0.03637560345111979
EDNGIIKAF	9	Unmodified	_EDNGIIKAF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7103576660156	2	503.763832	1005.51311	0.55254	0.00027835	-0.14665	-7.3877E-05	0.40589	0.00020447	503.76371227575765	54.262	0.35326	54.262	54.098	54.451	0					20	12	2	0	0	0	0.080641	1	11620	11620		51.63	11.68	1	120760			2406	4585	1620	1633	3235	3235					0.010574636892897615
EDNVDPDYW	9	Unmodified	_EDNVDPDYW_					0	0	0		CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.72900390625	2	576.727643	1151.44073	0.40587	0.00023408	0.76925	0.00044365	1.1751	0.00067772	576.7281827031345	47.151	0.40161	47.234	47.06	47.461	0.083096					22	13	2	0	0	0	0.27929	1	9316	9316		9.3831	0.035688	1	67233			2407	132	1621	1634	3236	3236					-0.12892915174938935
EDNVDPDYW	9	Unmodified	_EDNVDPDYW_					0	0	0		CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	576.727643	1151.44073	0.43115	0.00024866	0.27107	0.00015633	0.70222	0.00040499	576.7278060554837	47.293	0.25579	47.293	47.144	47.4	0	0.029351	-0.0002911	NaN	9.3831	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70885			2408	132	1621	1634							-0.12892915174938935
EDPLLTKAW	9	Unmodified	_EDPLLTKAW_					0	0	0		tr|U7T5V6|U7T5V6_FUSNULambdafamilyphageportalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00099PE=4SV=1	tr|U7T5V6|U7T5V6_FUSNULambdafamilyphageportalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00099PE=4SV=1	tr|U7T5V6|U7T5V6_FUSNULambdafamilyphageportalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00099PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.7509765625	2	536.787307	1071.56006	0.73802	0.00039616	3.505	0.0018814	4.243	0.0022776	537.2899898569146	54.076	0.091454	54.141	54.087	54.179	0.065128					5	3	2	0	0	0	0.25281	1	11423	11423		6.7232	0	1	32152			2409	13728	1622	1635	3237	3237					0.027143232404114315
EDQRTVQLL	9	Unmodified	_EDQRTVQLL_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-5|MYH14	REV__nc|ENSG00000105357|Q7Z406-5|MYH14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2844848632812	2	551.29857	1100.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.604	1	39.604	39.104	40.104	0								0	0	0	0.27782	1	7174	7174		3.5965	0.60125	1		+		2410	8537	1623	1636	3238	3238					0.03631922638055585
EDQVMQLE	8	Unmodified	_EDQVMQLE_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-4|FAM184A	REV__nc|ENSG00000111879|Q8NB25-4|FAM184A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2259826660156	2	496.223682	990.432811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.424	1	89.424	88.924	89.924	0								0	0	0	0.38822	1	22327	22327		9.3831	2.0939	1		+		2411	8700	1624	1637	3239	3239					-0.06278765696060873
EDQWKKRYKTF	11	Unmodified	_EDQWKKRYKTF_					0	0	0			REV__ENST00000467870.1_1_14:57445264-57445663:+|nuORF	REV__ENST00000467870.1_1_14:57445264-57445663:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7813415527344	3	510.268414	1527.78341	0.42992	0.00021938	2.7782	0.0014176	3.2082	0.001637	510.60402427296845	68.72	0.29457	68.72	68.558	68.852	0					16	10	2	0	0	0	0.31091	1	16000	16000		2.4348	1.1051	1	88523	+		2412	12012	1625	1638	3240	3240					0.04063191954674039
EDRFETNFLL	10	Unmodified	_EDRFETNFLL_					0	0	0		ENSG00000275572|ENST00000614228|GRIFIN	ENSG00000275572|ENST00000614228|GRIFIN	ENSG00000275572|ENST00000614228|GRIFIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.8172607421875	2	642.31696	1282.61937	0.33845	0.00021739	0.099244	6.3746E-05	0.4377	0.00028114	642.3167690672162	68.272	0.83102	68.272	67.944	68.775	0					66	29	3	0	0	0	0.43214	1	15840	15840		8.1555	0.54658	1	232400			2413	5749	1626	1639	3241	3241					-0.010638255360390758
EDRFETNFLL	10	Unmodified	_EDRFETNFLL_					0	0	0		ENSG00000275572|ENST00000614228|GRIFIN	ENSG00000275572|ENST00000614228|GRIFIN	ENSG00000275572|ENST00000614228|GRIFIN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3170166015625	2	642.31696	1282.61937	0.35596	0.00022864	0.027666	1.777E-05	0.38363	0.00024641	642.3167994060891	68.239	0.83312	68.302	67.961	68.794	0.063507					67	31	3	0	0	0	0.31761	1	15798	15798		5.2969	0	1	235870			2414	5749	1626	1639	3242	3242					-0.010638255360390758
EDRFETNFLL	10	Unmodified	_EDRFETNFLL_					0	0	0		ENSG00000275572|ENST00000614228|GRIFIN	ENSG00000275572|ENST00000614228|GRIFIN	ENSG00000275572|ENST00000614228|GRIFIN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	642.31696	1282.61937	0.33845	0.00021739	0.099244	6.3746E-05	0.4377	0.00028114	642.3167690672162	68.272	0.83102	68.272	67.944	68.775	0	-0.01526	4.7998E-05	NaN	5.2969	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232400			2415	5749	1626	1639							-0.010638255360390758
EDRRTLVL	8	Unmodified	_EDRRTLVL_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2904357910156	2	501.290548	1000.56654	0.30809	0.00015444	0.07228	3.6233E-05	0.38037	0.00019067	501.2904433310158	78.764	2.4673	78.764	77.555	80.022	0					159	85	3	0	0	0	0.53345	2	19223	19223;19274		5.7604	5.7604	1	917630			2416	248	1627	1640	3243;3244	3243					0.06628261191792717
EDSAIYLTF	9	Unmodified	_EDSAIYLTF_					0	0	0			REV__ENSG00000204033|ENST00000372113|LRIT2	REV__ENSG00000204033|ENST00000372113|LRIT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7547607421875	2	529.755672	1057.49679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.666	1	26.752	26.252	27.252	0.0867								0	0	0	0.29525	1	3195	3195		0	0	1		+		2417	10935	1628	1641	3245	3245					-0.029656622675020117
EDSAWLGFT	9	Unmodified	_EDSAWLGFT_					0	0	0		ENST00000357640.8_1_1:111743121-111743307:-|nuORF	ENST00000357640.8_1_1:111743121-111743307:-|nuORF	ENST00000357640.8_1_1:111743121-111743307:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2415771484375	2	513.232364	1024.45018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.156	1	29.234	28.734	29.734	0.078287								0	0	0	0.25992	1	3925	3925		7.2892	1.5574	1				2418	6134	1629	1642	3246	3246					-0.06107102098769701
EDSEGLSGAF	10	Unmodified	_EDSEGLSGAF_					0	0	0			REV__EML4-MTA3|1|fusion	REV__EML4-MTA3|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7363586425781	2	506.216911	1010.41927	0.38248	0.00019362	0.72363	0.00036631	1.1061	0.00055993	506.21705824331775	55.625	0.36903	55.625	55.497	55.866	0					23	12	3	0	0	0	0.31496	1	12040	12040		9.3831	1.7742	1	66736	+		2419	7913	1630	1643	3247	3247					-0.08552300203643881
EDSEIGRGPF	10	Unmodified	_EDSEIGRGPF_					0	0	0		ENST00000552279.1_1_12:58150872-58151028:+|nuORF	ENST00000552279.1_1_12:58150872-58151028:+|nuORF	ENST00000552279.1_1_12:58150872-58151028:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3113403320312	2	553.759278	1105.504	0.3409	0.00018878	0.6986	0.00038685	1.0395	0.00057563	553.7598697516937	59.495	0.26777	59.495	59.36	59.628	0					16	10	2	0	0	0	0.31481	1	13185	13185		15.248	1.3424	1	51761			2420	7106	1631	1644	3248	3248					-0.04452929667036187
EDSYREQV	8	Unmodified	_EDSYREQV_					0	0	0		nc|ENSG00000254893|A6NIZ1|RAP1BL	nc|ENSG00000254893|A6NIZ1|RAP1BL	nc|ENSG00000254893|A6NIZ1|RAP1BL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2413940429688	2	513.230353	1024.44615	-0.11236	-5.7665E-05	-3.8314	-0.0019664	-3.9437	-0.002024	513.2297450095873	28.749	0.065313	28.749	28.718	28.783	0					5	3	2	0	0	0	0.53557	1	3935	3935		4.3292	0	1	6568.8			2421	7619	1632	1645	3249	3249					-0.06509191592465413
EDTLQGFPQVR	11	Unmodified	_EDTLQGFPQVR_					0	0	0			REV__DDR1|p.A842V|1|0.22|ENSG00000204580|chr6:30898961-30898961|C/T|missense_variant	REV__DDR1|p.A842V|1|0.22|ENSG00000204580|chr6:30898961-30898961|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3272094726562	2	645.327859	1288.64116	0.45625	0.00029443	-1.9619	-0.0012661	-1.5057	-0.00097166	645.3264246641438	57.593	0.36008	57.593	57.408	57.768	0					21	12	2	0	0	0	0.41369	1	12675	12675		1.1933	0.66858	1	229230	+		2422	7872	1633	1646	3250	3250					0.00838979212517188
EDTMKLCE	8	Unmodified	_EDTMKLCE_					0	0	0			REV__KIF15|p.R1286K|1|0.24|ENSG00000163808|chr3:44851837-44851837|G/A|missense_variant	REV__KIF15|p.R1286K|1|0.24|ENSG00000163808|chr3:44851837-44851837|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.72265625	2	484.706811	967.399068	-0.085876	-4.1624E-05	-0.20437	-9.9061E-05	-0.29025	-0.00014069	484.70665101183386	49.095	0.42623	49.095	48.888	49.314	0					26	14	2	0	0	0	0.3576	1	9977	9977		0.79363	0	1	135680	+		2423	12688	1634	1647	3251	3251					-0.08593510459479603
EDYCFVPAG	9	Unmodified	_EDYCFVPAG_					0	0	0			REV__nc|ENSG00000196115|Q6NVV9-3|ADAM5	REV__nc|ENSG00000196115|Q6NVV9-3|ADAM5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2907409667969	2	500.707668	999.400783	0.52522	0.00026298	0.63529	0.00031809	1.1605	0.00058108	500.7078461729758	81.329	0.36066	81.351	81.162	81.523	0.021866					21	12	2	0	0	0	0.2491	1	19696	19696		4.756	0	1	128460	+		2424	12866	1635	1648	3252	3252					-0.09894133379202685
EDYHLILQM	9	Unmodified	_EDYHLILQM_					0	0	0			REV__ENST00000528096.1_1_11:67766987-67770655:-|nuORF	REV__ENST00000528096.1_1_11:67766987-67770655:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.303466796875	2	581.284074	1160.5536	0.69984	0.0004068	1.0973	0.00063786	1.7972	0.0010447	581.2846533326699	100.02	0.39586	100.07	99.924	100.32	0.042839					48	20	3	0	0	0	0.27929	1	25435	25435		9.3831	1.2276	1	156660	+		2425	8657	1636	1649	3253	3253					-0.02025937982580217
EDYTLQVNGR	10	Unmodified	_EDYTLQVNGR_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD;PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2899780273438	2	597.791109	1193.56767	0.37285	0.00022288	0.4573	0.00027337	0.83015	0.00049625	598.2924110703004	94.103	1.2715	94.103	93.941	95.212	0					121	59	3	0	0	0	0.31838	1	23912	23912		1.4819	0.15237	1	694960			2426	4451	1637	1650	3254	3254					-0.021375692299670845
EDYTVSWYW	9	Unmodified	_EDYTVSWYW_					0	0	0		ENST00000588393.5_1_19:10742408-10745595:+|nuORF;ENST00000588465.5_1_19:10713206-10745972:+|nuORF;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2	ENST00000588393.5_1_19:10742408-10745595:+|nuORF	ENST00000588393.5_1_19:10742408-10745595:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.7623901367188	2	624.764029	1247.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.05	1	114.06	113.56	114.56	0.013336								0	0	0	0.2927	1	29052	29052		0.52476	0	1				2427	2428	1638	1651	3255	3255					-0.10035161381529178
EEAAFPGRR	9	Unmodified	_EEAAFPGRR_					0	0	0		ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7640380859375	2	516.764697	1031.51484	-0.22944	-0.00011856	-1.0574	-0.00054644	-1.2869	-0.00066501	516.763852842335	21.586	0.41368	21.586	21.431	21.844	0					64	38	2	0	0	0	0.30757	1	1878	1878		5.7319	1.4026	1	63970			2428	5529	1639	1652	3256	3256					0.00034517497897468274
EEAAFPGRR	9	Unmodified	_EEAAFPGRR_					0	0	0		ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	516.764697	1031.51484	-0.22944	-0.00011856	-1.0574	-0.00054644	-1.2869	-0.00066501	516.763852842335	21.586	0.41368	21.586	21.431	21.844	0	0.065406	0.00016164	NaN	5.7319	64	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63970			2429	5529	1639	1652							0.00034517497897468274
EEAAIEENKRN	11	Unmodified	_EEAAIEENKRN_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8822937011719	3	434.880996	1301.62116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.35	1	95.35	94.85	95.85	0								0	0	0	0.33867	1	24132	24132		1.2148	0.4383	1				2430	891	1640	1653	3257	3257					-0.01758816518099593
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8090209960938	2	575.808771	1149.60299	-0.021538	-1.2402E-05	-0.0077796	-4.4796E-06	-0.029317	-1.6881E-05	575.808722405365	33.872	0.4666	33.872	33.656	34.123	0					31	16	3	0	0	0	0.30397	1	5440	5440		6.2058	4.3615	1	51049			2431	3183	1641	1654	3258	3258					0.034170932978668134
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8086547851562	2	575.808771	1149.60299	0.030381	1.7494E-05	0.15319	8.8207E-05	0.18357	0.0001057	575.8088230903955	33.831	0.39146	33.905	33.695	34.086	0.074322					33	17	3	0	0	0	0.28472	1	5314	5314		8.7454	5.4641	1	49110			2432	3183	1641	1654	3259	3259					0.034170932978668134
EEAENTLQSF	10	Unmodified	_EEAENTLQSF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3299560546875	2	584.26185	1166.50915	0.66832	0.00039047	0.4908	0.00028676	1.1591	0.00067723	584.2622874756995	55.562	0.74161	55.562	55.293	56.035	0					61	25	3	0	0	0	0.00088479	1	12053	12053		117.84	72.138	1	1171400			2433	494	1642	1655	3260	3260					-0.06744670595094249
EEAENTLQSF	10	Unmodified	_EEAENTLQSF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.329833984375	2	584.26185	1166.50915	0.721	0.00042125	0.2765	0.00016155	0.9975	0.0005828	584.2621800774508	55.498	0.71737	55.563	55.292	56.01	0.065128					71	26	4	0	0	0	0.00088479	1	11866	11866		107.56	69.589	1	886420			2434	494	1642	1655	3261	3261					-0.06744670595094249
EEAFAIFRKF	10	Unmodified	_EEAFAIFRKF_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.22705078125	3	419.892396	1256.65536	0.58205	0.0002444	-0.66541	-0.0002794	-0.083362	-3.5003E-05	419.8920225171325	62.603	0.52047	62.603	62.392	62.912	0					40	18	3	0	0	0	0.43325	1	14157	14157		7.9454	6.6158	1	202610			2435	200;3052	1643	1656	3262	3262					0.03729676431453299
EEAFAIFRKF	10	Unmodified	_EEAFAIFRKF_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.2268981933594	3	419.892396	1256.65536	0.18915	7.9423E-05	-0.063867	-2.6817E-05	0.12528	5.2605E-05	419.8922341162145	62.494	0.40592	62.567	62.424	62.83	0.072697					34	13	3	0	0	0	0.40917	1	14000	14000		10.899	8.9926	1	356930			2436	200;3052	1643	1656	3263	3263					0.03729676431453299
EEAFMMSFY	9	Unmodified	_EEAFMMSFY_					0	0	0			REV__nc|ENSG00000112365|O43167-2|ZBTB24	REV__nc|ENSG00000112365|O43167-2|ZBTB24	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7333984375	2	577.730286	1153.44602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.486	1	88.516	88.016	89.016	0.030037								0	0	0	0.28631	1	21882	21882		1.8442	0.88196	1		+		2437	8713	1644	1657	3264	3264					-0.12456650908325173
EEALILDNKY	10	Unmodified	_EEALILDNKY_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.314453125	2	604.313886	1206.61322	0.62324	0.00037663	-0.40166	-0.00024273	0.22157	0.0001339	604.3136952696	53.681	0.39796	53.681	53.469	53.867	0					35	14	3	0	0	0	0.00018049	2	11412	11412;11459		100.71	65.777	1	242510			2438	5313	1645	1658	3265;3266	3265					0.018176562324242695
EEALILDNKY	10	Unmodified	_EEALILDNKY_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.3139038085938	2	604.313886	1206.61322	0.73406	0.0004436	-0.24442	-0.0001477	0.48964	0.0002959	604.3136608094505	53.643	0.39426	53.708	53.5	53.894	0.06543					40	17	3	0	0	0	0.018369	2	11271	11271;11319		69.338	40.844	1	215090			2439	5313	1645	1658	3267;3268	3267					0.018176562324242695
EEAQVRKENQW	11	Unmodified	_EEAQVRKENQW_					0	0	0		ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.9004821777344	3	472.90039	1415.67934	-0.4062	-0.00019209	0.010031	4.7436E-06	-0.39617	-0.00018735	472.9004217215521	26.886	0.3781	26.886	26.694	27.072	0					53	26	3	0	0	0	0.41254	1	3390	3390		1.4551	0.67859	1	25206			2440	1807	1646	1659	3269	3269					-0.011871348727936493
EEAQVRKENQW	11	Unmodified	_EEAQVRKENQW_					0	0	0		ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.9002380371094	3	472.90039	1415.67934	-0.3828	-0.00018103	-0.055144	-2.6077E-05	-0.43794	-0.0002071	472.9004497786617	26.781	0.32924	26.868	26.715	27.044	0.0867					52	23	3	0	0	0	0.39523	1	3217	3217		5.4027	4.8968	1	47785			2441	1807	1646	1659	3270	3270					-0.011871348727936493
EEDEDEDYY	9	Unmodified	_EEDEDEDYY_					0	0	0			REV__nc|ENSG00000050405|Q9UHB6-3|LIMA1	REV__nc|ENSG00000050405|Q9UHB6-3|LIMA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.7010498046875	2	603.701488	1205.38842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.151	1	96.191	95.691	96.691	0.039772								0	0	0	0.28527	1	24218	24218		2.0598	0	1		+		2442	8052	1647	1660	3271	3271					-0.2060554309921372
EEDHSEFYLN	10	Unmodified	_EEDHSEFYLN_					0	0	0		PIK3C2G|p.Q386E|1|0.16|ENSG00000139144|chr12:18320980-18320980|C/G|missense_variant	PIK3C2G|p.Q386E|1|0.16|ENSG00000139144|chr12:18320980-18320980|C/G|missense_variant	PIK3C2G|p.Q386E|1|0.16|ENSG00000139144|chr12:18320980-18320980|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.7656860351562	2	641.764757	1281.51496	0.30982	0.00019883	0.46041	0.00029548	0.77024	0.00049431	641.7651040768411	81.798	0.45667	81.82	81.645	82.102	0.021866					33	15	3	0	0	0	0.42335	1	19842	19842		9.3831	3.6513	1	272670			2443	7668	1648	1661	3272	3272					-0.11453572083405561
EEDLSPVPYL	10	Unmodified	_EEDLSPVPYL_					0	0	0		ENST00000452184.2_1_9:66457988-66459870:+|nuORF	ENST00000452184.2_1_9:66457988-66459870:+|nuORF	ENST00000452184.2_1_9:66457988-66459870:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2853393554688	2	581.287337	1160.56012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.37	1	86.37	85.87	86.87	0								0	0	0	0.33487	1	21402	21402		6.2058	0.47393	1				2444	6567	1649	1662	3273	3273					-0.013737215502487743
EEDREIRKL	9	Unmodified	_EEDREIRKL_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.7775268554688	2	594.322576	1186.6306	-0.18156	-0.00010791	-0.017405	-1.0344E-05	-0.19897	-0.00011825	594.322576558978	29.652	0.36334	29.731	29.57	29.933	0.078289					39	20	3	0	0	0	0.23975	1	4072	4072		14.838	3.198	1	47494			2445	3304	1650	1663	3274	3274					0.04474996558087696
EEEDQYWL	8	Unmodified	_EEEDQYWL_					0	0	0		nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5	nc|ENSG00000100150|O75140-6|DEPDC5	nc|ENSG00000100150|O75140-6|DEPDC5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.227783203125	2	556.232561	1110.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.457	1	32.457	31.957	32.957	0								0	0	0	0.38822	1	5027	5027		0.79363	0	1				2446	1164	1651	1664	3275	3275					-0.10023727169573249
EEEESFADDLH	11	Unmodified	_EEEESFADDLH_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.84552001953125	3	440.845728	1319.51536	0.32365	0.00014268	-0.077609	-3.4214E-05	0.24604	0.00010847	440.84576588599293	52.369	0.5145	52.369	52.19	52.704	0					38	17	3	0	0	0	0.41309	1	11083	11083		1.3296	0.70282	1	127470	+		2447	10936	1652	1665	3276	3276					-0.13162197154224486
EEEKHASQMI	10	Unmodified	_EEEKHASQMI_					0	0	0		nc|ENSG00000109762|Q9H3E2-2|SNX25;nc|ENSG00000109762|Q9H3E2|SNX25;ENSG00000109762|ENST00000652585|SNX25	nc|ENSG00000109762|Q9H3E2-2|SNX25	nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.78173828125	2	601.27952	1200.54449	0.66939	0.00040249	1.8381	0.0011052	2.5075	0.0015077	601.280552825855	97.687	0.45599	97.727	97.526	97.982	0.040855					56	22	3	0	0	0	0.37637	1	24655	24655		14.405	0.49933	1	229900			2448	1639	1653	1666	3277	3277					-0.04776331338939599
EEEVKTYF	8	Unmodified	_EEEVKTYF_					0	0	0		UTP20|p.E45K|1|0.27|ENSG00000120800|chr12:101285576-101285576|G/A|missense_variant	UTP20|p.E45K|1|0.27|ENSG00000120800|chr12:101285576-101285576|G/A|missense_variant	UTP20|p.E45K|1|0.27|ENSG00000120800|chr12:101285576-101285576|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.27392578125	2	522.747847	1043.48114	-0.27345	-0.00014295	0.86325	0.00045126	0.5898	0.00030831	523.2512414465264	42.892	0.23433	42.892	42.796	43.03	0					8	7	2	0	0	0	0.35759	1	8195	8195		11.64	4.3511	1	25084			2449	13761	1654	1667	3278	3278					-0.03885948784522952
EEFDFHVRW	9	Unmodified	_EEFDFHVRW_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.19610595703125	3	422.196367	1263.56727	0.63652	0.00026874	-0.83546	-0.00035273	-0.19894	-8.3991E-05	422.19600597858107	63.096	0.73724	63.096	62.912	63.649	0					63	27	3	0	0	0	0.21723	1	14287	14287		16.566	13.246	1	752050			2450	2937	1655	1668	3279	3279					-0.05396944159156192
EEFDFHVRW	9	Unmodified	_EEFDFHVRW_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1962890625	3	422.196367	1263.56727	0.23249	9.8158E-05	-0.29474	-0.00012444	-0.062242	-2.6278E-05	422.196151217967	63.029	0.62413	63.102	62.884	63.508	0.072701					68	26	4	0	0	0	0.30717	3	14114	14114;14160;14224		5.7834	4.4538	1	725990			2451	2937	1655	1668	3280;3281;3282	3280					-0.05396944159156192
EEFELLGKAY	10	Unmodified	_EEFELLGKAY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8026123046875	2	599.803154	1197.59175	0.55501	0.0003329	0.014589	8.7508E-06	0.5696	0.00034165	599.8029946632739	64.083	0.46323	64.083	63.946	64.409	0					38	15	3	0	0	0	0.00099206	2	14620	14620;14630		90.135	63.867	1	352380			2452	4957	1656	1669	3283;3284	3283					0.0008627120373603248
EEFELLGKAY	10	Unmodified	_EEFELLGKAY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8030395507812	2	599.803154	1197.59175	0.44292	0.00026567	0.94599	0.00056741	1.3889	0.00083308	599.803971589648	64.001	0.63279	64.072	63.797	64.43	0.071014					46	21	3	0	0	0	0.00099206	1	14438	14438		90.135	63.867	1	435000			2453	4957	1656	1669	3285	3285					0.0008627120373603248
EEFFQNSKLL	10	Unmodified	_EEFFQNSKLL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8214721679688	2	627.821878	1253.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.53	1	103.57	103.07	104.07	0.03791								0	0	0	0.33892	1	26447	26447		1.4819	0	1				2454	5414	1657	1670	3286	3286					0.012533624693332968
EEFGQAFSF	9	Unmodified	_EEFGQAFSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.232666015625	2	531.232364	1060.45018	0.32595	0.00017316	0.2317	0.00012309	0.55765	0.00029624	531.2324366980662	77.54	1.0229	77.54	77.338	78.361	0					108	37	6	0	0	0	1.5492E-17	4	18714	18668;18714;18764;18813		201.57	119.68	1	3117400			2455	5618	1658	1671	3287;3288;3289;3290	3288					-0.0776310209876101
EEFGQAFSF	9	Unmodified	_EEFGQAFSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2326049804688	2	531.232364	1060.45018	0.52706	0.00027999	0.063995	3.3996E-05	0.59105	0.00031399	531.232322343106	77.479	0.995	77.513	77.326	78.321	0.034485					91	35	4	0	0	0	8.600400000000001E-24	3	18557	18508;18557;18604		216.57	134.68	1	2359000			2456	5618	1658	1671	3291;3292;3293	3292					-0.0776310209876101
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2537841796875	2	545.253631	1088.49271	0.47776	0.0002605	0.16719	9.116E-05	0.64495	0.00035166	545.2536557391794	60.405	1.2058	60.405	60.183	61.389	0					128	43	5	0	0	0	5.7754E-06	1	13484	13484		152.89	120.58	1	1054300			2457	5462	1659	1672	3294	3294					-0.047997069705161266
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.25390625	2	545.253631	1088.49271	0.22356	0.00012189	0.29286	0.00015968	0.51641	0.00028158	545.2537942495328	60.315	1.2624	60.388	60.125	61.388	0.073421					95	43	3	0	0	0	1.8728E-05	3	13334	13291;13334;13381		140.63	108.33	1	950240			2458	5462	1659	1672	3295;3296;3297	3296					-0.047997069705161266
EEFLRQEHF	9	Unmodified	_EEFLRQEHF_					0	0	0		nc|ENSG00000135114|Q15646-3|OASL;ENSG00000135114|ENST00000257570|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF;nc|ENSG00000135114|Q15646-2|OASL	nc|ENSG00000135114|Q15646-3|OASL	nc|ENSG00000135114|Q15646-3|OASL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7662963867188	2	617.796195	1233.57784	-0.61424	-0.00037947	0.13853	8.5581E-05	-0.47571	-0.00029389	617.7961913204418	43.745	0.37234	43.745	43.572	43.945	0					25	13	2	0	0	0	0.25458	1	8403	8403		5.7319	1.7875	1	61894			2459	2714	1660	1673	3298	3298					-0.02960961504709303
EEFLYQIYR	9	Unmodified	_EEFLYQIYR_					0	0	0		ENST00000552283.5_1_12:102468021-102468123:-|nuORF	ENST00000552283.5_1_12:102468021-102468123:-|nuORF	ENST00000552283.5_1_12:102468021-102468123:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.87982177734375	3	420.880156	1259.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.761	1	48.837	48.337	49.337	0.076607								0	0	0	0.2733	1	9807	9807		4.5289	1.2092	1				2460	7108	1661	1674	3299	3299					-0.0007862018510422786
EEFQILANSW	10	Unmodified	_EEFQILANSW_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000102158|Q9H0U3-2|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.798095703125	2	618.798403	1235.58225	0.16742	0.0001036	-0.3051	-0.00018879	-0.13768	-8.5194E-05	618.7980456373509	83.883	0.4466	83.883	83.658	84.105	0					28	14	3	0	0	0	0.28696	1	20653	20653		23.964	8.2255	1	191420			2461	1298	1662	1675	3300	3300					-0.026114970818071015
EEFQILANSW	10	Unmodified	_EEFQILANSW_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000102158|Q9H0U3-2|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.7974243164062	2	618.798403	1235.58225	-0.060192	-3.7247E-05	0.27216	0.00016841	0.21196	0.00013116	618.7984081515594	83.87	0.44774	83.892	83.668	84.115	0.021744					30	15	3	0	0	0	0.29583	1	20490	20490		23.016	8.0585	1	133230			2462	1298	1662	1675	3301	3301					-0.026114970818071015
EEFRKDFI	8	Unmodified	_EEFRKDFI_					0	0	0		ATG4C|p.A334Sfs*7|1|0.07|ENSG00000125703|chr1:62834103-62834104|-/AGTA|frameshift_variant;ENSG00000125703|ENST00000317868|ATG4C	ATG4C|p.A334Sfs*7|1|0.07|ENSG00000125703|chr1:62834103-62834104|-/AGTA|frameshift_variant	ATG4C|p.A334Sfs*7|1|0.07|ENSG00000125703|chr1:62834103-62834104|-/AGTA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2772827148438	2	542.277106	1082.53966	0.077497	4.2025E-05	0.67246	0.00036466	0.74996	0.00040669	542.2773343226398	59.136	0.9742	59.136	58.682	59.656	0					67	36	2	0	0	0	0.50159	1	13030	13030		12.532	0.29089	1	289660			2463	65	1663	1676	3302	3302					0.0016915258061089844
EEGDNEEEEY	10	Unmodified	_EEGDNEEEEY_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000493599.1_1_20:44979035-44979263:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7156372070312	2	621.717669	1241.42079	-0.65338	-0.00040622	-1.055	-0.0006559	-1.7084	-0.0010621	621.7169157873985	21.037	0.26932	21.037	20.888	21.158	0					42	28	2	0	0	0	0.47345	1	1732	1732		0.35063	0.043601	1	16652			2464	889	1664	1677	3303	3303					-0.19026755696222608
EEGQLRSM	8	Unmodified	_EEGQLRSM_					0	0	0			REV__ENST00000454678.6_1_6:30166895-30168914:-|nuORF	REV__ENST00000454678.6_1_6:30166895-30168914:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2234802246094	2	475.224017	948.43348	-0.17599	-8.3637E-05	-0.24277	-0.00011537	-0.41877	-0.00019901	475.22381936106274	20.285	0.9134	20.385	20.035	20.948	0.099497					182	100	2	0	0	0	0.53858	1	1543	1543		2.3027	0	1	386460	+		2465	11941	1665	1678	3304	3304					-0.042799262563676166
EEGQLRSM	8	Unmodified	_EEGQLRSM_					0	0	0			REV__ENST00000454678.6_1_6:30166895-30168914:-|nuORF	REV__ENST00000454678.6_1_6:30166895-30168914:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2232971191406	2	475.224017	948.43348	-0.22082	-0.00010494	-0.14091	-6.6965E-05	-0.36173	-0.0001719	475.22385224388387	21.518	2.564	21.62	20.801	23.365	0.10178					529	258	3	0	0	0	0.53858	1	2147	2147		2.3027	0	1	395230	+		2466	11941	1665	1678	3305	3305					-0.042799262563676166
EEGYNHLECH	10	Unmodified	_EEGYNHLECH_					0	0	0		MPEG1|p.G560Afs*43|1|0.33|ENSG00000197629|chr11:59211187-59211187|C/-|frameshift_variant;ENSG00000197629|ENST00000361050|MPEG1	MPEG1|p.G560Afs*43|1|0.33|ENSG00000197629|chr11:59211187-59211187|C/-|frameshift_variant	MPEG1|p.G560Afs*43|1|0.33|ENSG00000197629|chr11:59211187-59211187|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7433471679688	2	615.745844	1229.47714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.803	1	19.803	19.303	20.303	0								0	0	0	0.34005	1	1442	1442		0	0	1				2467	5310	1666	1679	3306	3306					-0.12842361549883208
EEGYRTRNV	9	Unmodified	_EEGYRTRNV_					0	0	0		ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2781982421875	2	562.278169	1122.54179	-0.012052	-6.7767E-06	0.0077238	4.3429E-06	-0.0043284	-2.4338E-06	562.2780743257362	26.186	0.4169	26.278	26.103	26.52	0.091507					72	36	3	0	0	0	0.33704	1	3063	3063		1.8442	1.8442	1	53823			2468	4841	1667	1680	3307	3307					-0.014584186815909561
EEHASYHLRAH	11	Unmodified	_EEHASYHLRAH_					0	0	0		nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4	nc|ENSG00000179242|P55283-2|CDH4	nc|ENSG00000179242|P55283-2|CDH4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.54888916015625	3	450.549692	1348.62725	-0.13472	-6.0697E-05	-1.6341	-0.00073626	-1.7689	-0.00079696	450.8832294724902	33.051	0.50984	33.126	32.914	33.424	0.074322					44	20	3	0	0	0	0.40824	1	5073	5073		2.4348	0.69251	1	38975			2469	4769	1668	1681	3308	3308					-0.03312253495914774
EEHASYHLRAH	11	Unmodified	_EEHASYHLRAH_					0	0	0		nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4	nc|ENSG00000179242|P55283-2|CDH4	nc|ENSG00000179242|P55283-2|CDH4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	450.549692	1348.62725	-0.13472	-6.0697E-05	-1.6341	-0.00073626	-1.7689	-0.00079696	450.8832294724902	33.051	0.50984	33.126	32.914	33.424	0.074322	0.001539	-1.7792E-05	NaN	2.4348	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38975			2470	4769	1668	1681							-0.03312253495914774
EEHDDGKTN	9	Unmodified	_EEHDDGKTN_					0	0	0			REV__ENST00000519029.1_1_8:67896384-67896720:-|nuORF	REV__ENST00000519029.1_1_8:67896384-67896720:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3035888671875	2	522.715067	1043.41558	0.66516	0.00034769	-2.335	-0.0012206	-1.6699	-0.00087286	522.7137402946199	84.068	0.22314	84.068	83.931	84.154	0					12	7	2	0	0	0	0.25875	1	20702	20702		1.8442	0.36234	1	44859	+		2471	12286	1669	1682	3309	3309					-0.1043896997750835
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2561645507812	2	545.828975	1089.6434	0.58038	0.00031679	-0.18945	-0.00010341	0.39093	0.00021338	545.8288509267175	54.905	0.63627	54.905	54.682	55.318	0					61	23	4	0	0	0	0.017949	1	11830	11830		71.922	31.965	1	611410			2472	494	1670	1683	3310	3310					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.256103515625	2	545.828975	1089.6434	0.60088	0.00032798	-0.10817	-5.9041E-05	0.49271	0.00026894	545.828894396049	54.888	0.57727	54.953	54.758	55.335	0.065128					58	23	3	0	0	0	0.00048792	1	11675	11675		92.653	50.814	1	446990			2473	494	1670	1683	3311	3311					0.10216059688286805
EEIDGYRRFL	10	Unmodified	_EEIDGYRRFL_					0	0	0			REV__RNGTT|p.G235Vfs*7|1|0.13|ENSG00000111880|chr6:88891896-88891896|C/-|frameshift_variant	REV__RNGTT|p.G235Vfs*7|1|0.13|ENSG00000111880|chr6:88891896-88891896|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.2226867675781	3	433.222693	1296.64625	0.24857	0.00010769	-0.49134	-0.00021286	-0.24277	-0.00010517	433.2224446871911	55.542	0.78935	55.607	55.353	56.142	0.065128					61	28	4	0	0	0	0.40917	1	11867	11867		10.899	0.58372	1	1336900	+		2474	8701	1671	1684	3312	3312					0.009792830751393922
EEIDLRSVGW	10	Unmodified	_EEIDLRSVGW_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3041381835938	2	602.303852	1202.59315	0.50334	0.00030316	0.56613	0.00034098	1.0695	0.00064415	602.3040289237407	67.846	0.65495	67.846	67.669	68.324	0					32	24	2	0	0	0	0.0012129	2	15763	15763;15805		87.258	58.177	1	527090			2475	1650	1672	1685	3313;3314	3313					-4.0947075376607245E-05
EEIDLRSVGW	10	Unmodified	_EEIDLRSVGW_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3043212890625	2	602.303852	1202.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.834	1	67.897	67.397	68.397	0.063507								0	0	0	9.4574E-05	1	15595	15595		103.82	54.296	1				2476	1650	1672	1685	3315	3315					-4.0947075376607245E-05
EEIFRFFM	8	Unmodified	_EEIFRFFM_					0	0	0			REV__DENND4A|p.I626F|1|0.25|ENSG00000174485|chr15:65715555-65715555|T/A|missense_variant	REV__DENND4A|p.I626F|1|0.25|ENSG00000174485|chr15:65715555-65715555|T/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2745361328125	2	559.770603	1117.52665	0.22644	0.00012676	-1.8313	-0.0010251	-1.6048	-0.00089833	559.7690662680141	34.619	3.068	34.695	32.893	35.961	0.076244					197	126	2	0	0	0	0.53817	1	5202	5202		2.5775	0.51773	1	233660	+		2477	7876	1673	1686	3316	3316					-0.027410018031332584
EEIHCYEPQL	10	Unmodified	_EEIHCYEPQL_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-12|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.7801513671875	2	630.781896	1259.54924	-0.57685	-0.00036387	-2.5368	-0.0016002	-3.1136	-0.001964	630.7805372231924	41.11	0.55143	41.11	40.881	41.433	0					44	19	3	0	0	0	0.47161	1	7703	7703		0.40072	0.050084	1	78377			2478	2508	1674	1687	3317	3317					-0.07015447196181412
EEIQQRLAQF	10	Unmodified	_EEIQQRLAQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.3311157226562	2	631.330402	1260.64625	0.40362	0.00025482	-0.28657	-0.00018092	0.11704	7.3892E-05	631.3301699028726	54.038	0.4557	54.038	53.867	54.322	0					26	15	3	0	0	0	0.043719	1	11545	11545		59.368	20.754	1	147540			2479	5313	1675	1688	3318	3318					0.02635283075096595
EEIQQRLAQF	10	Unmodified	_EEIQQRLAQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.3302001953125	2	631.330402	1260.64625	0.50631	0.00031965	-0.5261	-0.00033214	-0.019796	-1.2498E-05	631.3299662370615	54.042	0.36967	54.107	53.945	54.314	0.065128					27	13	3	0	0	0	0.086538	1	11405	11405		47.594	19.1	1	135280			2480	5313	1675	1688	3319	3319					0.02635283075096595
EEIREAFRVF	10	Unmodified	_EEIREAFRVF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;CALM1|p.E83K|1|0.59|ENSG00000198668|chr14:90403930-90403930|G/A|missense_variant;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.3400268554688	2	648.340769	1294.66699	0.23394	0.00015168	0.33664	0.00021826	0.57059	0.00036993	648.3407848160905	56.345	0.41013	56.345	56.19	56.6	0					23	14	2	0	0	0	0.21441	1	12235	12235		51.415	36.167	1	237430			2481	3189;4741	1676	1689	3320	3320					0.03143873454769164
EEIREAFRVF	10	Unmodified	_EEIREAFRVF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;CALM1|p.E83K|1|0.59|ENSG00000198668|chr14:90403930-90403930|G/A|missense_variant;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3411254882812	2	648.340769	1294.66699	0.053529	3.4705E-05	0.63133	0.00040932	0.68486	0.00044402	648.3413242648451	56.271	0.2825	56.338	56.212	56.494	0.066448					18	10	2	0	0	0	0.17079	1	12080	12080		37.075	21.826	1	166030			2482	3189;4741	1676	1689	3321	3321					0.03143873454769164
EEKKTMVR	8	Unmodified	_EEKKTMVR_					0	0	0			REV__nc|ENSG00000186635|Q96P48-3|ARAP1	REV__nc|ENSG00000186635|Q96P48-3|ARAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7788391113281	2	510.778959	1019.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.76	1	31.76	31.26	32.26	0								0	0	0	0.38822	1	4819	4819		0.69038	0	1		+		2483	10709	1677	1690	3322	3322					0.03437499082838258
EEKLLKSQRN	10	Unmodified	_EEKLLKSQRN_					0	0	0		nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2432861328125	3	415.570093	1243.68845	0.19202	7.9796E-05	3.3077	0.0013746	3.4998	0.0014544	415.57140890918674	46.065	0.4812	46.065	45.902	46.384	0					24	16	2	0	0	0	0.31811	1	9100	9100		1.4551	0.24029	1	29958			2484	7524	1678	1691	3323	3323					0.07635258483537655
EEKPNNPEF	9	Unmodified	_EEKPNNPEF_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.25390625	2	552.253828	1102.4931	0.0042922	2.3704E-06	0.11569	6.3893E-05	0.11999	6.6263E-05	552.2538717813355	32.51	0.57464	32.51	32.307	32.881	0					63	27	3	0	0	0	0.12214	2	5024	5024;5061		27.629	3.6082	1	195310			2485	2097	1679	1692	3324;3325	3324					-0.05404332041325688
EEKPNNPEF	9	Unmodified	_EEKPNNPEF_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.253662109375	2	552.253828	1102.4931	0.1142	6.3068E-05	-0.10624	-5.8674E-05	0.0079568	4.3941E-06	552.2537496987342	32.45	0.6106	32.524	32.355	32.965	0.07378					73	32	3	0	0	0	0.20358	2	4916	4879;4916		18.146	3.3081	1	136320			2486	2097	1679	1692	3326;3327	3327					-0.05404332041325688
EEKRKSKSKK	10	Unmodified	_EEKRKSKSKK_					0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3717651367188	2	624.375143	1246.73573	-0.073608	-4.5959E-05	-3.7584	-0.0023466	-3.832	-0.0023926	624.3725988913737	103.54	0.28925	103.54	103.43	103.72	0					45	31	2	0	0	0	0.46746	1	26613	26613		1.4819	0.15237	1	140060	+		2487	8691	1680	1693	3328	3328					0.12223537754516656
EEKRPGAI	8	Unmodified	_EEKRPGAI_					0	0	0			REV__ENST00000490549.1_1_10:25883203-25888200:+|nuORF	REV__ENST00000490549.1_1_10:25883203-25888200:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.54864501953125	2	450.250892	898.48723	0.034206	1.5401E-05	0.52253	0.00023527	0.55674	0.00025067	450.2509751481744	32.968	0.30352	32.968	32.826	33.13	0					17	11	2	0	0	0	0.3576	1	5206	5206		7.9102	0	1	25939	+		2488	9640	1681	1694	3329	3329					0.03392614237657199
EELDFQKNI	9	Unmodified	_EELDFQKNI_					0	0	0		nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-5|LMNA	nc|ENSG00000160789|P02545-5|LMNA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2615966796875	2	568.285128	1134.5557	0.11997	6.8175E-05	-1.9074	-0.001084	-1.7875	-0.0010158	568.2843172591602	51.729	0.40781	51.729	51.529	51.937	0					35	13	4	0	0	0	0.13858	1	10833	10833		38.176	10.547	1	142520			2489	3778	1682	1695	3330	3330					-0.006191859731416116
EELDFQKNI	9	Unmodified	_EELDFQKNI_					0	0	0		nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-5|LMNA	nc|ENSG00000160789|P02545-5|LMNA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2844848632812	2	568.285128	1134.5557	0.23064	0.00013107	-1.2021	-0.00068316	-0.9715	-0.00055209	568.2841873814702	51.638	0.3365	51.707	51.556	51.892	0.069878					24	11	3	0	0	0	0.22912	1	10686	10686		13.042	0	1	114300			2490	3778	1682	1695	3331	3331					-0.006191859731416116
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7825927734375	2	601.782418	1201.55028	-0.085864	-5.1672E-05	0.48952	0.00029458	0.40365	0.00024291	601.7826008947233	40.279	0.92359	40.279	40.096	41.02	0					77	32	4	0	0	0	0.0011298	2	7400	7400;7443		121.35	65.843	1	641710			2491	1903	1683	1696	3332;3333	3332					-0.0424290955561446
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7825927734375	2	601.782418	1201.55028	0.064	3.8514E-05	0.33422	0.00020113	0.39822	0.00023964	601.7825582797743	40.198	0.78869	40.287	40.112	40.901	0.089191					76	30	4	0	0	0	0.0039507	2	7249	7249;7295		103.82	61.868	1	576950			2492	1903	1683	1696	3334;3335	3334					-0.0424290955561446
EELGFRPEY	9	Unmodified	_EELGFRPEY_					0	0	0		PARP1-LIN9|1|fusion;ENSG00000143799|ENST00000366794|PARP1	PARP1-LIN9|1|fusion;ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2716064453125	2	570.272021	1138.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.251	1	52.251	51.751	52.751	0								0	0	0	0.21325	1	10997	10997		16.149	8.8599	1				2493	3183;7660	1684	1697	3336	3336					-0.03423455144616128
EELGFRPEY	9	Unmodified	_EELGFRPEY_					0	0	0		PARP1-LIN9|1|fusion;ENSG00000143799|ENST00000366794|PARP1	PARP1-LIN9|1|fusion;ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7724609375	2	570.272021	1138.52949	0.26923	0.00015353	0.48494	0.00027655	0.75417	0.00043008	570.2750137327746	52.47	0.8402	52.538	52.175	53.015	0.067173					76	34	3	0	0	0	0.30397	1	10885	10885		6.2058	0	1	215930			2494	3183;7660	1684	1697	3337	3337					-0.03423455144616128
EELGHTETY	9	Unmodified	_EELGHTETY_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.73779296875	2	539.738011	1077.46147	-0.065627	-3.5421E-05	0.087249	4.7092E-05	0.021623	1.1671E-05	539.7380548432585	32.108	0.39647	32.108	31.937	32.333	0					29	14	4	0	0	0	0.25979	1	4922	4922		11.64	3.047	1	53648			2495	671	1685	1698	3338	3338					-0.07416324795258333
EELGHTETY	9	Unmodified	_EELGHTETY_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.73876953125	2	539.738011	1077.46147	0.087617	4.729E-05	0.25723	0.00013883	0.34484	0.00018612	539.7379927154628	32.047	0.39076	32.12	31.979	32.37	0.07378					33	17	3	0	0	0	0.25979	1	4784	4784		11.64	0	1	50278			2496	671	1685	1698	3339	3339					-0.07416324795258333
EELHLSIF	8	Unmodified	_EELHLSIF_					0	0	0			REV__nc|ENSG00000131584|Q96P50-4|ACAP3	REV__nc|ENSG00000131584|Q96P50-4|ACAP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2610168457031	2	494.260925	986.507297	0.54435	0.00026905	-0.38783	-0.00019169	0.15651	7.7359E-05	494.26056628722995	48.02	0.40844	48.1	47.948	48.357	0.080032					23	14	2	0	0	0	0.3576	1	9586	9586		8.5933	0	1	87906	+		2497	9090	1686	1699	3340	3340					0.013503651776204606
EELKELLPEI	10	Unmodified	_EELKELLPEI_					0	0	0		ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	ENST00000529239.1_1_8:61850552-61850903:-|nuORF	ENST00000529239.1_1_8:61850552-61850903:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7841186523438	2	606.839736	1211.66492	0.23315	0.00014148	3.2244	0.0019567	3.4576	0.0020982	606.8415048766853	58.488	0.34604	58.488	58.416	58.762	0					18	11	2	0	0	0	0.31616	1	12966	12966		10.074	3.3508	1	177110			2498	2595	1687	1700	3341	3341					0.0675539992632821
EELPVLRR	8	Unmodified	_EELPVLRR_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;NSD1|p.K754Nfs*14|1|0.37|ENSG00000165671|chr5:177210658-177210658|A/-|frameshift_variant;NSD1|p.G1095Afs*3|1|0.46|ENSG00000165671|chr5:177211681-177211681|G/-|frameshift_variant;NSD1|p.G1095Kfs*2|1|0.26|ENSG00000165671|chr5:177211682-177211692|GGCCACTTAAC/-|frameshift_variant;NSD1|p.S1086Rfs*6|1|0.82|ENSG00000165671|chr5:177211655-177211661|AGTAAAG/-|frameshift_variant;NSD1|p.D984*|1|0.21|ENSG00000165671|chr5:177211342-177211343|-/G|frameshift_variant;NSD1|p.T922Rfs*6|1|0.44|ENSG00000165671|chr5:177211164-177211164|C/-|frameshift_variant;NSD1|p.L590Ifs*5|1|0.48|ENSG00000165671|chr5:177210166-177210167|TT/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.78497314453125	2	506.300916	1010.58728	-0.15148	-7.6692E-05	-0.73034	-0.00036977	-0.88182	-0.00044647	506.30052063491377	29.808	0.30096	29.884	29.73	30.031	0.075403					29	17	2	0	0	0	0.3576	1	4097	4097		0.79363	0	1	22561			2499	4099	1688	1701	3342	3342					0.08240851571463281
EELSGLDETI	10	Unmodified	_EELSGLDETI_					0	0	0		ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7554931640625	2	553.266601	1104.51865	-0.079557	-4.4016E-05	1.1443	0.0006331	1.0647	0.00058908	553.2676522191151	24.818	4.3	24.818	24.523	28.823	0					763	304	5	0	0	0	0.33099	1	3260	3260		19.257	3.4098	1	9055400			2500	1619	1689	1702	3343	3343					-0.02942902309564488
EELSPKMTL	9	Unmodified	_EELSPKMTL_					0	0	0		nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2603149414062	2	524.273175	1046.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.106	1	40.194	39.694	40.694	0.088562								0	0	0	0.28724	1	7199	7199		1.6526	0.96225	1				2501	385	1690	1703	3344	3344					0.01039257268826077
EELYKRPDE	9	Unmodified	_EELYKRPDE_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7879028320312	2	589.788035	1177.56152	-0.054442	-3.2109E-05	0.45366	0.00026756	0.39922	0.00023546	589.7880995772421	27.031	0.28621	27.031	26.909	27.195	0					46	21	3	0	0	0	0.34704	1	3414	3414		0.52476	0	1	46994			2502	4612	1691	1704	3345	3345					-0.020160874614930435
EEMPISNL	8	Unmodified	_EEMPISNL_					0	0	0		ENSG00000196917|ENST00000432564|HCAR1	ENSG00000196917|ENST00000432564|HCAR1	ENSG00000196917|ENST00000432564|HCAR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2328796386719	2	466.723318	931.432083	0.32716	0.00015269	-0.48307	-0.00022546	-0.15591	-7.2767E-05	466.7230706066378	65.964	1.2597	66.031	65.344	66.604	0.066872					66	48	2	0	0	0	0.35492	1	14951	14951		16.942	3.4344	1	264930			2503	5254	1692	1705	3346	3346					-0.03637560345111979
EENDYINSYF	10	Unmodified	_EENDYINSYF_					0	0	0		ENSG00000113356|ENST00000651687|POLR3G	ENSG00000113356|ENST00000651687|POLR3G	ENSG00000113356|ENST00000651687|POLR3G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.27001953125	2	647.267133	1292.51971	0.014949	9.676E-06	3.3543	0.0021711	3.3693	0.0021808	647.2693350970868	89.817	0.25837	89.851	89.673	89.932	0.034058					17	9	2	0	0	0	0.44938	1	22276	22276		4.897	1.3005	1	109280			2504	1795	1693	1706	3347	3347					-0.11484687940674121
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8372192382812	2	550.837331	1099.66011	-0.15872	-8.743E-05	0.13412	7.388E-05	-0.024598	-1.355E-05	550.8372644117178	23.079	0.58543	23.079	22.922	23.508	0					118	56	3	0	0	0	0.03918	1	2314	2314		45.7	16.618	1	88099			2505	2185	1694	1707	3348	3348					0.11426560574227551
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8372192382812	2	550.837331	1099.66011	0.15961	8.7917E-05	-0.024353	-1.3415E-05	0.13525	7.4502E-05	550.8371900243029	22.853	0.49033	22.955	22.793	23.283	0.10178					106	47	4	0	0	0	0.20358	1	2145	2145		18.146	4.2403	1	116970			2506	2185	1694	1707	3349	3349					0.11426560574227551
EENTNILKF	9	Unmodified	_EENTNILKF_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2871704101562	2	554.287671	1106.56079	0.65677	0.00036404	-0.39636	-0.0002197	0.26041	0.00014434	554.2871638699083	55.388	0.469	55.388	55.166	55.635	0					39	16	3	0	0	0	0.0089808	1	11941	11941		70.332	15.558	1	325780			2507	2916	1695	1708	3350	3350					0.011771178894832701
EENTNILKF	9	Unmodified	_EENTNILKF_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2874145507812	2	554.287671	1106.56079	0.68906	0.00038194	-0.28216	-0.0001564	0.4069	0.00022554	554.2872258493187	55.292	0.40619	55.357	55.189	55.595	0.065128					40	15	3	0	0	0	0.029291	2	11802	11802;11823		51.63	9.6373	1	240630			2508	2916	1695	1708	3351;3352	3351					0.011771178894832701
EEPFFEYEAS	10	Unmodified	_EEPFFEYEAS_					0	0	0			REV__ENST00000472398.5_1_21:38529111-38558109:+|nuORF	REV__ENST00000472398.5_1_21:38529111-38558109:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.7615356445312	2	624.258776	1246.503	0.38467	0.00024013	-0.49342	-0.00030802	-0.10875	-6.7886E-05	624.2581388792698	85.857	0.5632	85.882	85.695	86.258	0.025169					48	20	4	0	0	0	0.42335	1	21177	21177		9.3831	2.66	1	418820	+		2509	10572	1696	1709	3353	3353					-0.11039188826589452
EEPIRIEM	8	Unmodified	_EEPIRIEM_					0	0	0			REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2801818847656	2	508.757692	1015.50083	0.10126	5.1517E-05	-0.30231	-0.0001538	-0.20105	-0.00010228	508.7573874026114	35.19	0.36081	35.269	35.122	35.483	0.078827					26	14	2	0	0	0	0.3576	1	5719	5719		1.8442	0	1	40561	+		2510	13302	1697	1710	3354	3354					-0.0062989604541598965
EEPLVMPVW	9	Unmodified	_EEPLVMPVW_					0	0	0		ENST00000520944.5_1_8:67834940-67837798:-|nuORF	ENST00000520944.5_1_8:67834940-67837798:-|nuORF	ENST00000520944.5_1_8:67834940-67837798:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.278564453125	2	550.27826	1098.54197	-0.29727	-0.00016358	0.043574	2.3978E-05	-0.25369	-0.0001396	550.2783616790274	17.265	0.18475	17.265	17.16	17.345	0					36	22	2	0	0	0	0.34646	1	877	877		0.6015	0	1	22593			2511	6957	1698	1711	3355	3355					-0.0033613500593219214
EEPRLGVL	8	Unmodified	_EEPRLGVL_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;nc|ENSG00000248290|Q16473|TNXA	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.5526123046875	2	456.761092	911.507631	0.022227	1.0153E-05	0.086704	3.9603E-05	0.10893	4.9755E-05	456.7610677579856	32.961	0.34858	32.961	32.781	33.13	0					18	13	2	0	0	0	0.3576	1	5167	5167		2.5775	0	1	10968			2512	4293	1699	1712	3356	3356					0.048337848974938424
EEPSIQHCF	9	Unmodified	_EEPSIQHCF_					0	0	0			REV__DEPDC1B|p.R433H|1|0.19|ENSG00000035499|chr5:60599205-60599205|C/T|missense_variant	REV__DEPDC1B|p.R433H|1|0.19|ENSG00000035499|chr5:60599205-60599205|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.236572265625	2	545.237124	1088.45969	-0.24248	-0.00013221	-0.87145	-0.00047515	-1.1139	-0.00060735	545.2364731022005	42.346	0.30662	42.435	42.291	42.598	0.089764					18	10	2	0	0	0	0.3182	1	7838	7838		4.3292	0	1	73168	+		2513	7878	1700	1713	3357	3357					-0.08099657084881073
EEPSTLAMQL	10	Unmodified	_EEPSTLAMQL_					0	0	0			REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7227172851562	2	559.773539	1117.53253	-0.23385	-0.0001309	-1.1744	-0.00065739	-1.4082	-0.00078829	560.2747979019173	40.738	0.38092	40.738	40.53	40.911	0					18	12	2	0	0	0	0.31794	1	7457	7457		3.5965	0.70727	1	26715	+		2514	8623	1701	1714	3358	3358					-0.02153948082104762
EEPTENPPI	9	Unmodified	_EEPTENPPI_					0	0	0			REV__ENSG00000170881|ENST00000303545|RNF139	REV__ENSG00000170881|ENST00000303545|RNF139	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2411499023438	2	513.242929	1024.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.717	1	23.817	23.317	24.317	0.099739								0	0	0	0.28724	1	2367	2367		1.6526	0.85899	1		+		2515	10229	1702	1715	3359	3359					-0.03995136789922071
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000547000.1_1_12:101462478-101462640:+|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2672729492188	2	553.808239	1105.60193	0.0084637	4.6873E-06	0.52756	0.00029217	0.53602	0.00029685	553.8085604966592	30.465	0.31822	30.465	30.327	30.645	0					30	17	2	0	0	0	0.25699	1	4428	4428		3.5965	1.2938	1	36838			2516	1021	1703	1716	3360	3360					0.05334878928965736
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000547000.1_1_12:101462478-101462640:+|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8087158203125	2	553.808239	1105.60193	0.12303	6.8133E-05	0.20491	0.00011348	0.32793	0.00018161	553.8082350244043	30.441	0.34866	30.516	30.353	30.702	0.075405					39	21	3	0	0	0	0.30397	1	4310	4310		6.2058	4.3615	1	37715			2517	1021	1703	1716	3361	3361					0.05334878928965736
EEPVQLSVL	9	Unmodified	_EEPVQLSVL_					0	0	0			REV__ENSG00000160813|ENST00000292330|PPP1R35	REV__ENSG00000160813|ENST00000292330|PPP1R35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2793273925781	2	507.279315	1012.54408	0.31633	0.00016047	0.12215	6.1966E-05	0.43848	0.00022243	507.2793038882382	75.711	0.51167	75.711	75.425	75.937	0					62	27	3	0	0	0	0.11198	1	18107	18107		29.841	0.759	1	2446900	+		2518	9860	1704	1717	3362	3362					0.03830617003529824
EEQKNLHFF	9	Unmodified	_EEQKNLHFF_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2930297851562	2	596.293288	1190.57202	-0.24586	-0.0001466	-0.041249	-2.4597E-05	-0.28711	-0.0001712	596.2933497064258	44.186	0.29524	44.186	44.063	44.359	0					15	9	2	0	0	0	0.29576	1	8567	8567		7.2892	4.294	1	40526			2519	1885	1705	1718	3363	3363					-0.015640600164033458
EEQKVEVTIA	10	Unmodified	_EEQKVEVTIA_					0	0	0			REV__ENSG00000265817|ENST00000481490|FSBP	REV__ENSG00000265817|ENST00000481490|FSBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.3060913085938	2	573.306061	1144.59757	0.34315	0.00019673	0.55541	0.00031842	0.89856	0.00051515	573.305829236371	38.251	0.36795	38.338	38.168	38.536	0.08688					28	13	3	0	0	0	0.46208	1	6638	6638		2.4985	0	1	50460	+		2520	11119	1706	1719	3364	3364					0.0310536971539932
EEQLMCDEHF	10	Unmodified	_EEQLMCDEHF_					0	0	0			REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.5028381347656	3	427.502251	1279.48492	0.98596	0.0004215	0.78629	0.00033614	1.7723	0.00075764	427.50256554647797	80.181	0.58155	80.181	79.989	80.571	0					41	19	3	0	0	0	0.43972	1	19535	19535		3.5871	1.5031	1	616750	+		2521	10203	1707	1720	3365	3365					-0.14363970344629706
EEQLMCDEHF	10	Unmodified	_EEQLMCDEHF_					0	0	0			REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	427.502251	1279.48492	0.98596	0.0004215	0.78629	0.00033614	1.7723	0.00075764	427.50256554647797	80.181	0.58155	80.181	79.989	80.571	0	0.0017792	-0.00047401	NaN	3.5871	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	616750	+		2522	10203	1707	1720							-0.14363970344629706
EEQLMCDEHF	10	Unmodified	_EEQLMCDEHF_					0	0	0			REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	427.502251	1279.48492	0.43606	0.00018642	1.6181	0.00069172	2.0541	0.00087814	427.50292711970854	80.154	0.49702	80.177	79.988	80.485	0.023613	-0.0017792	0.00059273	NaN	3.5871	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336720	+		2523	10203	1707	1720							-0.14363970344629706
EEQQALQKKL	10	Unmodified	_EEQQALQKKL_					0	0	0		ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	ENSG00000198467|ENST00000645482|TPM2	ENSG00000198467|ENST00000645482|TPM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5626220703125	3	405.562827	1213.66665	0.0397	1.6101E-05	-0.23805	-9.6544E-05	-0.19835	-8.0443E-05	405.56268574862037	26.935	0.55889	26.935	26.753	27.312	0					113	38	4	0	0	0	0.42335	2	3388	3388;3427		5.4027	2.7715	1	173390		+	2524	233	1708	1721	3366;3367	3366					0.06836453734968018
EEQQALQKKL	10	Unmodified	_EEQQALQKKL_					0	0	0		ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	ENSG00000198467|ENST00000645482|TPM2	ENSG00000198467|ENST00000645482|TPM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5627136230469	3	405.562827	1213.66665	-0.297	-0.00012045	0.24083	9.7671E-05	-0.056176	-2.2783E-05	405.5628905883303	26.845	0.52564	26.932	26.722	27.248	0.0867					99	36	5	0	0	0	0.42335	2	3235	3235;3275		5.4027	2.7715	1	173210		+	2525	233	1708	1721	3368;3369	3368					0.06836453734968018
EEQSAIGRT	9	Unmodified	_EEQSAIGRT_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7464294433594	2	495.74617	989.477788	-0.11987	-5.9426E-05	0.029321	1.4536E-05	-0.09055	-4.489E-05	495.7461421623308	22.71	0.54293	22.71	22.579	23.122	0					97	51	3	0	0	0	0.32831	1	2263	2263		2.9952	0.49676	1	53083	+		2526	10025	1709	1722	3370	3370					-0.01737198838520726
EEQSAIGRT	9	Unmodified	_EEQSAIGRT_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7460021972656	2	495.74617	989.477788	0.14183	7.0313E-05	-0.1824	-9.0422E-05	-0.040563	-2.0109E-05	495.7460253630164	22.543	0.39464	22.645	22.508	22.903	0.10178					63	39	2	0	0	0	0.32831	1	2073	2073		2.9952	0.49676	1	63166	+		2527	10025	1709	1722	3371	3371					-0.01737198838520726
EEQSAIGRT	9	Unmodified	_EEQSAIGRT_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	495.74617	989.477788	-0.11987	-5.9426E-05	0.029321	1.4536E-05	-0.09055	-4.489E-05	495.7461421623308	22.71	0.54293	22.71	22.579	23.122	0	0.03268	0.0001187	NaN	2.9952	97	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53083	+		2528	10025	1709	1722							-0.01737198838520726
EEQVARESY	9	Unmodified	_EEQVARESY_					0	0	0		nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7568969726562	2	555.756735	1109.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.584	1	27.671	27.171	28.171	0.0867								0	0	0	0.27782	1	3460	3460		3.5965	1.098	1				2529	725	1710	1723	3372	3372					-0.05145233529651705
EEQVFHFYW	9	Unmodified	_EEQVFHFYW_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.7899780273438	2	642.787838	1283.56112	0.3938	0.00025313	1.6966	0.0010906	2.0904	0.0013437	642.7888521007064	67.578	0.9301	67.578	67.309	68.239	0					42	35	3	0	0	0	0.33356	1	15758	15758		2.3027	0.65011	1	172200			2530	1275	1711	1724	3373	3373					-0.06931462390662091
EERDEKGRC	9	Unmodified	_EERDEKGRC_					0	0	0			REV__tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	REV__tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2533569335938	2	561.253837	1120.49312	0.1029	5.7752E-05	2.3106	0.0012968	2.4135	0.0013546	561.2537544537441	44.112	0.93056	44.201	43.95	44.881	0.088921					57	32	3	0	0	0	0.32831	1	8441	8441		2.9952	0.49676	1	114280	+		2531	13266	1712	1725	3374	3374					-0.06230655312970157
EERDLKERL	9	Unmodified	_EERDLKERL_					0	0	0			REV__ENSG00000081818|ENST00000194152|PCDHB4	REV__ENSG00000081818|ENST00000194152|PCDHB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7775268554688	2	594.322576	1186.6306	-0.17114	-0.00010171	-0.19373	-0.00011514	-0.36487	-0.00021685	594.322391895866	29.671	0.33621	29.671	29.508	29.844	0					32	16	3	0	0	0	0.21603	1	4210	4210		20.454	0	1	40390	+		2532	8241	1713	1726	3375	3375					0.04474996558087696
EERQRFQEE	9	Unmodified	_EERQRFQEE_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.7891845703125	2	625.79164	1249.56873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.983	1	45.07	44.57	45.57	0.08754								0	0	0	0.28631	1	8669	8669		1.8442	0	1				2533	2854	1714	1727	3376	3376					-0.04607354861036583
EERRDKTE	8	Unmodified	_EERRDKTE_					0	0	0			REV__ENST00000600534.1_1_19:59085032-59085281:+|nuORF	REV__ENST00000600534.1_1_19:59085032-59085281:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.762939453125	2	531.762352	1061.51015	0.39117	0.00020801	0.88269	0.00046938	1.2739	0.00067739	531.7625547263391	94.651	0.37086	94.69	94.564	94.934	0.038094					25	14	2	0	0	0	0.50159	1	23779	23779		12.532	0.89125	1	55831	+		2534	12621	1715	1728	3377	3377					-0.01814411435520924
EESDLSRQY	9	Unmodified	_EESDLSRQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7540283203125	2	563.754192	1125.49383	-0.12755	-7.1906E-05	0.17257	9.7289E-05	0.045025	2.5383E-05	563.7542264362321	31.366	0.54365	31.366	31.161	31.705	0					57	24	3	0	0	0	0.065576	2	4715	4673;4715		39.95	39.95	1	132930			2535	856	1716	1729	3378;3379	3379					-0.06389537392283273
EESDLSRQY	9	Unmodified	_EESDLSRQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7540283203125	2	563.754192	1125.49383	-0.052674	-2.9695E-05	0.20751	0.00011698	0.15484	8.729E-05	563.7542412015208	31.314	0.566	31.388	31.226	31.792	0.07378					57	27	3	0	0	0	0.048027	1	4581	4581		43.772	25.626	1	99420			2536	856	1716	1729	3380	3380					-0.06389537392283273
EESFFILKY	9	Unmodified	_EESFFILKY_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.302734375	2	588.30279	1174.59103	0.20005	0.00011769	-1.4661	-0.00086252	-1.2661	-0.00074483	588.3017337001216	73.276	0.76958	73.276	72.718	73.487	0					48	27	2	0	0	0	0.0043658	1	17389	17389		96.111	40.608	1	648820			2537	4977	1717	1730	3381	3381					0.010714765546708804
EESFFILKY	9	Unmodified	_EESFFILKY_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3029174804688	2	588.30279	1174.59103	0.43665	0.00025688	-0.86087	-0.00050645	-0.42422	-0.00024957	588.301855997994	73.15	0.74237	73.203	72.718	73.461	0.052574					46	27	3	0	0	0	0.006264	2	17222	17222;17260		78.728	23.225	1	716160			2538	4977	1717	1730	3382;3383	3382					0.010714765546708804
EESKLDQVL	9	Unmodified	_EESKLDQVL_					0	0	0		nc|ENSG00000119397|Q7Z7A1-4|CNTRL	nc|ENSG00000119397|Q7Z7A1-4|CNTRL	nc|ENSG00000119397|Q7Z7A1-4|CNTRL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7621459960938	2	530.779679	1059.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.559	1	36.559	36.059	37.059	0								0	0	0	0.27427	1	6256	6256		4.3292	0	1				2539	7491	1718	1731	3384	3384					0.01741411652574243
EESPHSCPYC	10	Unmodified	_EESPHSCPYC_					0	0	0			REV__ENST00000433272.6_1_12:59266356-59274151:-|nuORF	REV__ENST00000433272.6_1_12:59266356-59274151:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8086547851562	2	576.210249	1150.40594	0.026748	1.5412E-05	-0.15767	-9.0851E-05	-0.13092	-7.5439E-05	576.2102243536867	33.652	0.31156	33.726	33.611	33.923	0.074322					24	13	2	0	0	0	0.31783	1	5314	5314		3.9444	0	1	23596	+		2540	9339	1719	1732	3385	3385					-0.16324197578887834
EESQPAKKTY	10	Unmodified	_EESQPAKKTY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7955322265625	2	590.79586	1179.57717	0.33797	0.00019967	-0.21477	-0.00012689	0.1232	7.2789E-05	590.7957588620383	16.624	0.15481	16.701	16.627	16.782	0.077806					29	19	2	0	0	0	0.46208	1	692	692		2.4985	1.169	1	12841			2541	5229	1720	1733	3386	3386					-0.005438009444333147
EESSKETKL	9	Unmodified	_EESSKETKL_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7685546875	2	525.769311	1049.52407	0.1362	7.1608E-05	-2.1932	-0.0011531	-2.057	-0.0010815	525.7679913322335	71.631	0.49898	71.69	71.346	71.844	0.058578					31	17	2	0	0	0	0.30397	1	16762	16762		6.2058	1.4498	1	174150	+		2542	8768	1721	1734	3387	3387					0.001288212729150473
EESYVHLD	8	Unmodified	_EESYVHLD_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;ENST00000502925.1_1_4:48549577-48553572:-|nuORF	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7617492675781	2	496.221997	990.429441	0.41225	0.00020457	2.778	0.0013785	3.1903	0.0015831	496.22354989770406	38.699	0.31566	38.786	38.595	38.911	0.08688					18	11	3	0	0	0	0.3576	1	6759	6759		2.5775	0.27475	1	16964			2543	824	1722	1735	3388	3388					-0.06615692478430901
EETCGCRWT	9	Unmodified	_EETCGCRWT_					0	0	0		VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant;ENSG00000110799|ENST00000261405|VWF	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7579956054688	2	542.712959	1083.41136	0.39839	0.00021621	-0.44717	-0.00024269	-0.048777	-2.6472E-05	542.7127159145938	37.779	0.39966	37.864	37.744	38.144	0.084476					16	13	2	0	0	0	0.25875	1	6576	6576		1.8442	0.51471	1	32386			2544	1681	1723	1736	3389	3389					-0.12700473996437722
EETKAVDVFHQ	11	Unmodified	_EETKAVDVFHQ_					0	0	0			REV__ENST00000463212.1_1_1:897013-897649:+|nuORF	REV__ENST00000463212.1_1_1:897013-897649:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8819274902344	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.469	1	51.539	51.039	52.039	0.069874								0	0	0	0.33897	1	10626	10626		1.1098	0.096179	1		+		2545	10754	1724	1737	3390	3390					-0.013567270243811436
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.8861389160156	3	439.88597	1316.63608	-5.4184E-05	-2.3835E-08	0.34403	0.00015134	0.34398	0.00015131	439.8860668551251	28.332	1.393	28.332	28.095	29.488	0					209	76	5	0	0	0	0.088508	3	3819	3778;3819;3915		47.053	37.289	1	811890			2546	5520	1725	1738	3391;3392;3393	3392					-0.009573246500849564
EEVLIPDQKY	10	Unmodified	_EEVLIPDQKY_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.8220825195312	2	617.321711	1232.62887	-0.34288	-0.00021167	0.72979	0.00045051	0.3869	0.00023884	617.3221533214079	51.458	0.38669	51.458	51.295	51.682	0					30	12	3	0	0	0	0.22608	1	10735	10735		30.703	11.341	1	228560			2547	357	1726	1739	3394	3394					0.021859427494746342
EEVPIDNN	8	Unmodified	_EEVPIDNN_					0	0	0			REV__nc|ENSG00000169402|B2RC85-2|RSPH10B2	REV__nc|ENSG00000169402|B2RC85-2|RSPH10B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.232421875	2	465.214172	928.413791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.815	1	56.881	56.381	57.381	0.066452								0	0	0	0.3878	1	12253	12253		14.838	0.25658	1		+		2548	9723	1727	1740	3395	3395					-0.053279789954672196
EEWLPRELW	9	Unmodified	_EEWLPRELW_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8491821289062	2	629.316763	1256.61897	0.28745	0.0001809	0.40808	0.00025681	0.69553	0.00043771	629.3169946503689	75.174	0.26226	75.174	75.09	75.352	0					14	9	2	0	0	0	0.11174	1	18004	18004		43.772	19.752	1	157960			2549	674	1728	1741	3396	3396					0.0009279953474106151
EEWLPRELW	9	Unmodified	_EEWLPRELW_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.317138671875	2	629.316763	1256.61897	0.38598	0.0002429	-0.097836	-6.157E-05	0.28814	0.00018133	629.3164872410977	75.154	0.21436	75.198	75.142	75.357	0.044037					13	7	2	0	0	0	0.065576	1	17837	17837		39.95	20.693	1	282850			2550	674	1728	1741	3397	3397					0.0009279953474106151
EEWLVNYQ	8	Unmodified	_EEWLVNYQ_					0	0	0			REV__nc|ENSG00000125755|Q92797-2|SYMPK	REV__nc|ENSG00000125755|Q92797-2|SYMPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.769775390625	2	540.753464	1079.49238	0.31025	0.00016777	1.0149	0.00054882	1.3252	0.00071658	540.75587791739	39.206	0.12068	39.294	39.244	39.364	0.088562					6	4	2	0	0	0	0.53858	1	6945	6945		2.3027	0	1	15118	+		2551	8977	1729	1742	3398	3398					-0.0441912669039084
EEYAMTVV	8	Unmodified	_EEYAMTVV_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__ENSG00000185313|ENST00000449082|SCN10A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.21844482421875	2	471.217869	940.421184	0.36942	0.00017408	-0.29969	-0.00014122	0.06973	3.2858E-05	471.2176877657837	64.562	0.99456	64.562	64.198	65.192	0					62	35	2	0	0	0	0.52502	3	14699	14699;14747;14819		9.3474	0	1	316400	+		2552	10151;10667	1730	1743	3399;3400;3401	3399					-0.05140962719406161
EEYAMTVV	8	Unmodified	_EEYAMTVV_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__ENSG00000185313|ENST00000449082|SCN10A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2174377441406	2	471.217869	940.421184	0.17615	8.3007E-05	-0.069921	-3.2948E-05	0.10623	5.0059E-05	471.21774873856265	64.475	0.83296	64.544	64.228	65.061	0.068916					48	30	2	0	0	0	0.52502	3	14531	14531;14588;14651		9.3474	0	1	271450	+		2553	10151;10667	1730	1743	3402;3403;3404	3402					-0.05140962719406161
EEYEHRGTPV	10	Unmodified	_EEYEHRGTPV_					0	0	0		KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.1912841796875	3	406.191282	1215.55202	0.0020138	8.1801E-07	-1.0797	-0.00043858	-1.0777	-0.00043776	406.1911409149625	25.268	0.62671	25.268	25.095	25.722	0					93	50	3	0	0	0	0.47199	1	2944	2944		0.62683	0	1	39372			2554	7375	1731	1744	3405	3405					-0.04713855746990703
EEYEHRGTPV	10	Unmodified	_EEYEHRGTPV_					0	0	0		KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	406.191282	1215.55202	0.0020138	8.1801E-07	-1.0797	-0.00043858	-1.0777	-0.00043776	406.1911409149625	25.268	0.62671	25.268	25.095	25.722	0	0.0045532	-0.0013198	NaN	0.62683	93	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39372			2555	7375	1731	1744							-0.04713855746990703
EEYEHRGTPV	10	Unmodified	_EEYEHRGTPV_					0	0	0		KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	406.191282	1215.55202	-0.24302	-9.8714E-05	0.13888	5.6412E-05	-0.10414	-4.2302E-05	406.1912972088278	25.162	0.36294	25.259	25.097	25.459	0.096073	-0.0045532	0.00016514	NaN	0.62683	52	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46022			2556	7375	1731	1744							-0.04713855746990703
EEYKRIGKW	9	Unmodified	_EEYKRIGKW_					0	0	0		tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2671508789062	2	604.824755	1207.63496	0.13882	8.396E-05	2.0941	0.0012665	2.2329	0.0013505	604.8260175852204	40.697	0.41672	40.786	40.594	41.011	0.089642					29	15	3	0	0	0	0.25051	1	7440	7440		7.9102	1.187	1	53255			2557	13460	1732	1745	3406	3406					0.03944505771664808
EEYLGHFEY	9	Unmodified	_EEYLGHFEY_					0	0	0			REV__ENST00000572418.1_1_17:3801110-3806945:-|nuORF	REV__ENST00000572418.1_1_17:3801110-3806945:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2827758789062	2	593.756204	1185.49785	0.29463	0.00017494	2.2946	0.0013624	2.5892	0.0015374	594.2599092762307	57.558	0.27946	57.626	57.5	57.779	0.068375					11	9	2	0	0	0	0.21603	1	12521	12521		20.454	1.1966	1	65690	+		2558	8616	1733	1746	3407	3407					-0.08747447898554128
EEYYRFYTPP	10	Unmodified	_EEYYRFYTPP_					0	0	0		nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.9008483886719	3	455.543432	1363.60847	-0.12883	-5.869E-05	1.0211	0.00046518	0.89231	0.00040649	455.54428640009104	23.344	0.30269	23.344	23.196	23.499	0					44	29	2	0	0	0	0.31857	1	2378	2378		0.13989	0.04505	1	19595			2559	3653	1734	1747	3408	3408					-0.05879227910349982
EEYYRFYTPP	10	Unmodified	_EEYYRFYTPP_					0	0	0		nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	455.543432	1363.60847	-0.082585	-3.7621E-05	-0.39903	-0.00018178	-0.48162	-0.0002194	455.5445516285063	23.303	0.034683	23.405	23.38	23.415	0.10178	0.03046	-0.0018981	NaN	0.13989	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4444.9			2560	3653	1734	1747							-0.05879227910349982
EFAKSIPSF	9	Unmodified	_EFAKSIPSF_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2680053710938	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.519	1	87.549	87.049	88.049	0.029816								0	0	0	0.25992	1	21591	21591		7.2892	2.5332	1				2561	1740	1735	1748	3409	3409					0.011666516946434058
EFAQDDDRL	9	Unmodified	_EFAQDDDRL_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant;CLINT1|p.P474Yfs*4|1|0.41|ENSG00000113282|chr5:157789473-157789477|GGCAA/-|frameshift_variant	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.747802734375	2	554.74891	1107.48327	0.66738	0.00037023	-1.7116	-0.00094949	-1.0442	-0.00057926	554.7475425612257	97.297	0.39919	97.297	97.039	97.438	0					26	17	2	0	0	0	0.33978	1	24761	24761		1.4819	0	1	131460			2562	1792	1736	1749	3410	3410					-0.06617520046734171
EFDAVLADF	9	Unmodified	_EFDAVLADF_					0	0	0		nc|ENSG00000102760|Q9H4X1-2|RGCC;ENSG00000102760|ENST00000379359|RGCC	nc|ENSG00000102760|Q9H4X1-2|RGCC	nc|ENSG00000102760|Q9H4X1-2|RGCC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7427978515625	2	513.742565	1025.47058	0.31274	0.00016067	0.15706	8.0687E-05	0.4698	0.00024136	513.742604857974	86.495	0.42976	86.522	86.26	86.69	0.02758					37	17	3	0	0	0	0.0087214	3	21297	21235;21249;21297		71.134	11.959	1	206710			2563	1326	1737	1750	3411;3412;3413	3413					-0.0411393143897385
EFDFFSPKP	9	Unmodified	_EFDFFSPKP_					0	0	0			REV__ENSG00000230124|ENST00000367595|ACBD6	REV__ENSG00000230124|ENST00000367595|ACBD6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.282470703125	2	557.266207	1112.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.538	1	67.603	67.103	68.103	0.064545								0	0	0	0.097189	1	15505	15505		34.102	1.9855	1		+		2564	11037	1738	1751	3414	3414					-0.03389652167948043
EFDFGLAVEF	10	Unmodified	_EFDFGLAVEF_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.277099609375	2	587.276772	1172.53899	0.49707	0.00029192	-0.12913	-7.5836E-05	0.36794	0.00021608	587.2766040225295	102.03	0.42574	102.03	101.84	102.26	0					51	30	2	0	0	0	0.42901	1	26124	26124		8.7454	0	1	198750			2565	5733	1739	1752	3415	3415					-0.040376868591238235
EFDKIFSI	8	Unmodified	_EFDKIFSI_					0	0	0		tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1	tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1	tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7640686035156	2	499.7633	997.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.867	1	73.867	73.367	74.367	0								0	0	0	0.38822	1	17586	17586		7.9102	0	1				2566	13444	1740	1753	3416	3416					0.013192493203860067
EFEGEQLNLGE	11	Unmodified	_EFEGEQLNLGE_					0	0	0			REV__AHR|p.F117_L118insEILAS|1|0.11|ENSG00000106546|chr7:17322597-17322598|-/TGAAATACTGGCATC|inframe_insertion	REV__AHR|p.F117_L118insEILAS|1|0.11|ENSG00000106546|chr7:17322597-17322598|-/TGAAATACTGGCATC|inframe_insertion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3140869140625	2	632.788232	1263.56191	0.22511	0.00014245	-2.0802	-0.0013163	-1.8551	-0.0011739	633.2901887900288	85.895	0.20235	85.895	85.757	85.959	0					9	7	2	0	0	0	0.31057	1	21264	21264		5.2969	0.96765	1	58200	+		2567	7703	1741	1754	3417	3417					-0.05932712532262485
EFERRNWV	8	Unmodified	_EFERRNWV_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2862548828125	2	568.285797	1134.55704	-0.16322	-9.2754E-05	0.4938	0.00028062	0.33058	0.00018787	568.2860281033439	27.758	0.7066	27.841	27.661	28.368	0.082132					94	41	4	0	0	0	0.54097	1	3602	3602		0.69038	0.088878	1	265120			2568	5454	1742	1755	3418	3418					-0.004855070937082928
EFFHKLSIF	9	Unmodified	_EFFHKLSIF_					0	0	0			REV__ENST00000506936.1_1_4:56768485-56770658:+|nuORF	REV__ENST00000506936.1_1_4:56768485-56770658:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3139038085938	2	584.313492	1166.61243	0.57505	0.00033601	0.45879	0.00026808	1.0338	0.00060409	584.3132695663584	78.839	2.1823	78.839	77.958	80.14	0					96	75	2	0	0	0	0.25376	1	19431	19431		6.2058	0.97511	1	200310	+		2569	12230	1743	1756	3419	3419					0.035789063740367055
EFFKEEQF	8	Unmodified	_EFFKEEQF_					0	0	0		ENST00000452512.6_1_2:200797792-200820219:-|nuORF;ENSG00000162971|ENST00000354611|TYW5;ENST00000441832.1_1_2:200800752-200808538:-|nuORF	ENST00000452512.6_1_2:200797792-200820219:-|nuORF	ENST00000452512.6_1_2:200797792-200820219:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2391357421875	2	552.25584	1102.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.865	1	66.865	66.365	67.365	0								0	0	0	0.38439	1	15455	15455		20.454	0.039092	1				2570	3867	1744	1757	3420	3420					-0.050022425476072385
EFGHWTYE	8	Unmodified	_EFGHWTYE_					0	0	0		nc|ENSG00000155329|Q8TBK6-2|ZCCHC10;ENSG00000155329|ENST00000509437|ZCCHC10	nc|ENSG00000155329|Q8TBK6-2|ZCCHC10	nc|ENSG00000155329|Q8TBK6-2|ZCCHC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7244873046875	2	534.724707	1067.43486	0.13726	7.3395E-05	-0.53554	-0.00028637	-0.39828	-0.00021297	534.7243946727915	26.55	0.77648	26.637	26.43	27.207	0.086699					136	56	4	0	0	0	0.53423	1	3180	3180		5.2307	2.9279	1	306380			2571	3583	1745	1758	3421	3421					-0.09615968895946025
EFGHWTYE	8	Unmodified	_EFGHWTYE_					0	0	0		nc|ENSG00000155329|Q8TBK6-2|ZCCHC10;ENSG00000155329|ENST00000509437|ZCCHC10	nc|ENSG00000155329|Q8TBK6-2|ZCCHC10	nc|ENSG00000155329|Q8TBK6-2|ZCCHC10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	534.724707	1067.43486	-0.10933	-5.8459E-05	-0.33353	-0.00017834	-0.44285	-0.0002368	534.7244877642831	26.641	0.91388	26.641	26.43	27.344	0	0.0020163	9.5913E-05	NaN	5.2307	147	61	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304320			2572	3583	1745	1758							-0.09615968895946025
EFHFWIYHF	9	Unmodified	_EFHFWIYHF_					0	0	0		ENST00000421210.1_2_10:64135465-64135950:+|nuORF	ENST00000421210.1_2_10:64135465-64135950:+|nuORF	ENST00000421210.1_2_10:64135465-64135950:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.8756408691406	3	442.541586	1324.60293	0.62044	0.00027457	-1.7635	-0.00078044	-1.1431	-0.00050587	442.8754033606813	99.434	0.31376	99.434	99.29	99.604	0					44	15	3	0	0	0	0.31086	1	25368	25368		5.2969	0.58097	1	331970			2573	6452	1746	1759	3422	3422					-0.04638861911485037
EFHFWIYHF	9	Unmodified	_EFHFWIYHF_					0	0	0		ENST00000421210.1_2_10:64135465-64135950:+|nuORF	ENST00000421210.1_2_10:64135465-64135950:+|nuORF	ENST00000421210.1_2_10:64135465-64135950:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.54132080078125	3	442.541586	1324.60293	0.39077	0.00017293	-1.3143	-0.00058163	-0.92353	-0.0004087	442.54103414415476	99.422	0.5165	99.465	99.166	99.682	0.042839					75	33	3	0	0	0	0.31086	1	25218	25218		5.2969	0.24936	1	445000			2574	6452	1746	1759	3423	3423					-0.04638861911485037
EFHFWIYHF	9	Unmodified	_EFHFWIYHF_					0	0	0		ENST00000421210.1_2_10:64135465-64135950:+|nuORF	ENST00000421210.1_2_10:64135465-64135950:+|nuORF	ENST00000421210.1_2_10:64135465-64135950:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	442.541586	1324.60293	0.39077	0.00017293	-1.3143	-0.00058163	-0.92353	-0.0004087	442.54103414415476	99.422	0.5165	99.465	99.166	99.682	0.042839	0.015446	0.00019172	NaN	5.2969	75	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445000			2575	6452	1746	1759							-0.04638861911485037
EFHYYKCL	8	Unmodified	_EFHYYKCL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.D503Afs*13|1|0.06|ENSG00000054654|chr14:63978952-63978953|-/CTATGGCTAAAATTATAGTTAA|frameshift_variant;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.75537109375	2	551.754953	1101.49535	0.3293	0.00018169	0.042361	2.3373E-05	0.37166	0.00020506	551.7552048270942	36.895	1.0322	36.895	36.332	37.364	0					83	39	3	0	0	0	0.53858	1	6210	6210		2.3027	0.24298	1	84683			2576	605;13422	1747	1760	3424	3424					-0.05133574837236665
EFKELALGLA	10	Unmodified	_EFKELALGLA_					0	0	0			REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7495727539062	2	545.810782	1089.60701	0.42098	0.00022977	-2.3538	-0.0012847	-1.9329	-0.001055	545.8093557006625	81.767	0.33538	81.789	81.57	81.905	0.021866					21	11	2	0	0	0	0.28526	1	19821	19821		27.629	3.839	1	179150	+		2577	7746	1748	1761	3425	3425					0.0657918279155183
EFLAALYNPF	10	Unmodified	_EFLAALYNPF_					0	0	0		nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-2|TNFAIP8;ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-4|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8240356445312	2	592.802957	1183.59136	0.38126	0.00022601	-0.6065	-0.00035954	-0.22524	-0.00013352	592.8023743314087	76	1.8751	76	75.268	77.144	0					207	89	3	0	0	0	0.39662	1	18556	18556		12.241	1.4411	1	3505900			2578	3263	1749	1762	3426	3426					0.00690896274500119
EFLDYIFDF	9	Unmodified	_EFLDYIFDF_					0	0	0			REV__MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant	REV__MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7684326171875	2	604.779148	1207.54374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.233	1	66.299	65.799	66.799	0.066872								0	0	0	0.25692	1	15115	15115		7.9102	1.187	1		+		2579	9520	1750	1763	3427	3427					-0.051728027163335355
EFLEVSQLSF	10	Unmodified	_EFLEVSQLSF_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-3|PLD2;ENST00000575246.6_1_17:4711576-4721404:+|nuORF	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2880249023438	2	599.803154	1197.59175	0.44439	0.00026654	1.2566	0.00075372	1.701	0.0010203	599.8044154700485	64.41	0.21788	64.479	64.344	64.562	0.068916					9	7	2	0	0	0	0.31803	1	14577	14577		3.2813	0.97858	1	95634			2580	2424	1751	1764	3428	3428					0.0008627120371329511
EFLFGEVAI	9	Unmodified	_EFLFGEVAI_					0	0	0			REV__nc|ENSG00000205060|Q969S0-2|SLC35B4	REV__nc|ENSG00000205060|Q969S0-2|SLC35B4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7890014648438	2	512.771126	1023.5277	0.50092	0.00025686	-0.091665	-4.7003E-05	0.40925	0.00020985	512.7708474829315	93.756	0.97869	93.756	93.548	94.527	0					74	46	3	0	0	0	0.32112	1	23853	23853		3.9444	0.66309	1	1060900	+		2581	10966	1752	1765	3429	3429					0.016875358374250027
EFLGRATYM	9	Unmodified	_EFLGRATYM_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.795166015625	2	544.265684	1086.51682	-0.19109	-0.000104	0.24257	0.00013202	0.051487	2.8023E-05	544.2655990641103	40.356	0.14806	40.356	40.26	40.408	0					5	4	2	0	0	0	0.2094	1	7411	7411		22.736	3.2973	1	11885	+		2582	10747	1753	1766	3430	3430					-0.022981898084935892
EFLGVETLL	9	Unmodified	_EFLGVETLL_					0	0	0		DNAJB2|p.F107Lfs*94|1|0.2|ENSG00000135924|chr2:219282028-219282028|T/-|frameshift_variant	DNAJB2|p.F107Lfs*94|1|0.2|ENSG00000135924|chr2:219282028-219282028|T/-|frameshift_variant	DNAJB2|p.F107Lfs*94|1|0.2|ENSG00000135924|chr2:219282028-219282028|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.76654052734375	2	510.784233	1019.55391	0.70421	0.0003597	-0.3372	-0.00017224	0.36701	0.00018746	510.7841725330021	84.903	0.32837	84.903	84.804	85.132	0					19	11	2	0	0	0	0.25644	1	20929	20929		3.9444	1.0552	1	95259			2583	289	1754	1767	3431	3431					0.04491805008922256
EFLLTHPVL	9	Unmodified	_EFLLTHPVL_					0	0	0		ENST00000536072.6_1_16:67909906-67914140:+|nuORF;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4	ENST00000536072.6_1_16:67909906-67914140:+|nuORF	ENST00000536072.6_1_16:67909906-67914140:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.7764282226562	2	534.808042	1067.60153	0.44426	0.00023759	-0.64627	-0.00034563	-0.20201	-0.00010804	534.8077433639031	59.859	0.70689	59.859	59.656	60.363	0					56	26	3	0	0	0	0.20845	1	13361	13361		15.847	0	1	283350			2584	527	1755	1768	3432	3432					0.07043503999739187
EFLPFHFLL	9	Unmodified	_EFLPFHFLL_					0	0	0		ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.8184814453125	2	581.81841	1161.62227	0.67162	0.00039076	-0.20355	-0.00011843	0.46807	0.00027233	581.8179609087152	93.422	0.61024	93.422	93.268	93.879	0					69	23	6	0	0	0	0.0042952	2	23540	23540;23582		98.807	66.69	1	843430			2585	5610	1756	1769	3433;3434	3433					0.04792094379422451
EFLPFHFLL	9	Unmodified	_EFLPFHFLL_					0	0	0		ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.818359375	2	581.81841	1161.62227	0.69282	0.0004031	-0.65356	-0.00038025	0.039263	2.2844E-05	581.8179243171802	93.438	0.56147	93.475	93.288	93.85	0.037369					62	21	4	0	0	0	0.02242	3	23421	23378;23421;23471		56.541	24.424	1	1090300			2586	5610	1756	1769	3435;3436;3437	3436					0.04792094379422451
EFLRRMGELF	10	Unmodified	_EFLRRMGELF_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.88519287109375	3	433.228902	1296.66488	0.20291	8.7906E-05	1.5628	0.00067704	1.7657	0.00076495	433.22952909024883	38.573	0.55915	38.66	38.435	38.994	0.08688					25	20	2	0	0	0	0.31837	1	6768	6768		1.9064	0.83491	1	32997			2587	4616	1757	1770	3438	3438					0.028411214453399225
EFLRRMGELF	10	Unmodified	_EFLRRMGELF_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	433.228902	1296.66488	0.3971	0.00017204	1.4823	0.00064217	1.8794	0.00081421	433.22966294178394	38.752	0.48948	38.752	38.514	39.004	0	0.045823	-4.6901E-05	NaN	1.9064	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19812			2588	4616	1757	1770							0.028411214453399225
EFLWLVLGW	9	Unmodified	_EFLWLVLGW_					0	0	0			REV__ENST00000217398.3_1_20:32295514-32298573:-|nuORF	REV__ENST00000217398.3_1_20:32295514-32298573:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7581176757812	2	581.81841	1161.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.145	1	94.183	93.683	94.683	0.038086								0	0	0	0.2722	1	23606	23606		4.756	0	1		+		2589	8426	1758	1771	3439	3439					0.04792094379399714
EFMIMTLT	8	Unmodified	_EFMIMTLT_					0	0	0		ENST00000474965.1_1_3:112185046-112188848:-|nuORF	ENST00000474965.1_1_3:112185046-112188848:-|nuORF	ENST00000474965.1_1_3:112185046-112188848:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.24053955078125	2	493.240289	984.466026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.2	1	104.2	103.7	104.7	0								0	0	0	0.38822	1	26805	26805		2.3027	0	1				2590	6702	1759	1772	3440	3440					-0.026828551777043685
EFPFSLINI	9	Unmodified	_EFPFSLINI_					0	0	0		ENST00000320849.8_1_20:34843710-34843899:+|nuORF	ENST00000320849.8_1_20:34843710-34843899:+|nuORF	ENST00000320849.8_1_20:34843710-34843899:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7466430664062	2	540.292225	1078.5699	0.63647	0.00034388	-0.57903	-0.00031285	0.057442	3.1036E-05	540.2920839842186	93.098	0.31261	93.098	92.956	93.268	0					17	11	2	0	0	0	0.24635	1	23461	23461		10.824	3.5347	1	50232			2591	6029	1760	1773	3441	3441					0.03375511245803864
EFQIYSWK	8	Unmodified	_EFQIYSWK_					0	0	0		nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-3|ATP13A4	nc|ENSG00000127249|Q4VNC1-2|ATP13A4	nc|ENSG00000127249|Q4VNC1-2|ATP13A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.774658203125	2	550.7742	1099.53385	0.44417	0.00024464	0.0061369	3.38E-06	0.45031	0.00024802	550.7741407267861	48.382	0.41672	48.462	48.248	48.665	0.080032					25	13	2	0	0	0	0.35121	1	9695	9695		30.637	1.555	1	154200			2592	2359	1761	1774	3442	3442					-0.011939459310497114
EFQKISHMVI	10	Unmodified	_EFQKISHMVI_					0	0	0		nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.2168273925781	3	411.221636	1230.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.6	1	48.6	48.1	49.1	0								0	0	0	0.33136	1	9888	9888		10.315	1.5635	1				2593	5112	1762	1775	3443	3443					0.036983166967957004
EFRDNEAL	8	Unmodified	_EFRDNEAL_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2353515625	2	497.235439	992.456324	0.1944	9.6664E-05	0.42476	0.00021121	0.61916	0.00030787	497.23562470459814	39.259	0.40312	39.259	39.03	39.433	0					26	14	3	0	0	0	0.53026	1	7062	7062		7.9102	0	1	77422	+		2594	9962	1763	1776	3444	3444					-0.04020583867247751
EFRDNEAL	8	Unmodified	_EFRDNEAL_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2353820800781	2	497.235439	992.456324	0.27557	0.00013702	0.40753	0.00020264	0.6831	0.00033966	497.23544726454236	39.167	0.36329	39.255	39.072	39.435	0.088562					24	14	2	0	0	0	0.53026	1	6928	6928		7.9102	0	1	60619	+		2595	9962	1763	1776	3445	3445					-0.04020583867247751
EFRDNEAL	8	Unmodified	_EFRDNEAL_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.781982421875	2	497.235439	992.456324	0.27557	0.00013702	0.40753	0.00020264	0.6831	0.00033966	497.23544726454236	39.167	0.36329	39.255	39.072	39.435	0.088562					24	14	2	0	0	0	0.3576	1	6886	6886		4.3292	0	1	60619	+		2596	9962	1763	1776	3446	3446					-0.04020583867247751
EFSNLFLN	8	Unmodified	_EFSNLFLN_					0	0	0			REV__nc|ENSG00000151687|Q7Z5J8-3|ANKAR	REV__nc|ENSG00000151687|Q7Z5J8-3|ANKAR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7192687988281	2	492.245275	982.475997	0.56176	0.00027652	-0.25901	-0.0001275	0.30275	0.00014903	492.24506039426507	53.978	0.50983	53.978	53.813	54.322	0					29	17	3	0	0	0	0.3576	1	11607	11607		4.3292	0	1	67969	+		2597	12813	1764	1777	3447	3447					-0.015942078564762596
EFSNLFLN	8	Unmodified	_EFSNLFLN_					0	0	0			REV__nc|ENSG00000151687|Q7Z5J8-3|ANKAR	REV__nc|ENSG00000151687|Q7Z5J8-3|ANKAR	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.245275	982.475997	0.50482	0.0002485	-0.70171	-0.00034541	-0.19689	-9.6918E-05	492.2448433568331	53.924	0.31929	53.989	53.838	54.157	0.065128	0.0055358	-0.00017054	NaN	4.3292	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83682	+		2598	12813	1764	1777							-0.015942078564762596
EFSQMLEEF	9	Unmodified	_EFSQMLEEF_					0	0	0		tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7735595703125	2	580.25244	1158.49033	0.56044	0.00032519	-2.4257	-0.0014075	-1.8652	-0.0010823	580.7523424296618	73.887	0.16181	73.935	73.827	73.988	0.048546					10	5	3	0	0	0	0.2418	1	17448	17448		13.906	2.2658	1	189270			2599	13717	1765	1778	3448	3448					-0.08257923490486974
EFSSALFEL	9	Unmodified	_EFSSALFEL_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7583618164062	2	521.758215	1041.50188	0.48362	0.00025234	0.00042406	2.2125E-07	0.48405	0.00025256	521.7580309913886	79.441	0.63312	79.441	79.157	79.79	0					62	21	5	0	0	0	0.011655	2	19313	19262;19313		64.236	9.4628	1	1418700	+		2600	11060	1766	1779	3449;3450	3450					-0.01721358404847706
EFSSALFEL	9	Unmodified	_EFSSALFEL_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3289184570312	2	521.758215	1041.50188	0.48362	0.00025234	0.00042406	2.2125E-07	0.48405	0.00025256	521.7580309913886	79.441	0.63312	79.441	79.157	79.79	0					62	21	5	0	0	0	0.21603	1	19244	19244		20.454	5.6154	1	1418700	+		2601	11060	1766	1779	3451	3451					-0.01721358404847706
EFSSALFEL	9	Unmodified	_EFSSALFEL_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7582397460938	2	521.758215	1041.50188	0.16367	8.5395E-05	0.177	9.2351E-05	0.34067	0.00017775	521.7581649961559	79.402	0.54681	79.429	79.195	79.742	0.026436					69	19	5	0	0	0	0.0053304	2	19137	19090;19137		81.613	13.532	1	1020100	+		2602	11060	1766	1779	3452;3453	3453					-0.01721358404847706
EFTEALRSP	9	Unmodified	_EFTEALRSP_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.72509765625	2	525.266739	1048.51892	-0.21152	-0.00011111	-0.35177	-0.00018478	-0.5633	-0.00029588	525.2664362666101	30.042	0.23939	30.117	29.972	30.211	0.075403					22	14	2	0	0	0	0.25845	1	4212	4212		2.0598	0	1	20437			2603	5605	1767	1780	3454	3454					-0.0033943779906167038
EFTTVLYNF	9	Unmodified	_EFTTVLYNF_					0	0	0		ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63	ENST00000460036.1_1_3:189507541-189590785:+|nuORF	ENST00000460036.1_1_3:189507541-189590785:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7280883789062	2	567.279315	1132.54408	0.58537	0.00033207	-0.66104	-0.00037499	-0.075666	-4.2924E-05	567.2788576720625	84.002	1.1973	84.002	83.079	84.276	0					72	38	3	0	0	0	0.14331	1	20667	20667		36.127	9.2434	1	464380			2604	166	1768	1781	3455	3455					-0.01689382996482891
EFTTVLYNF	9	Unmodified	_EFTTVLYNF_					0	0	0		ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63	ENST00000460036.1_1_3:189507541-189590785:+|nuORF	ENST00000460036.1_1_3:189507541-189590785:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2796020507812	2	567.279315	1132.54408	0.30098	0.00017074	0.059373	3.3681E-05	0.36035	0.00020442	567.2793031119962	84	1.0701	84.022	83.251	84.321	0.021744					74	38	4	0	0	0	0.028398	1	20522	20522		52.268	10.174	1	458890			2605	166	1768	1781	3456	3456					-0.01689382996482891
EFVDYDYV	8	Unmodified	_EFVDYDYV_					0	0	0			REV__tr|U7T5T5|U7T5T5_FUSNUDNApolymeraseIIIdeltaN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00384PE=4SV=1	REV__tr|U7T5T5|U7T5T5_FUSNUDNApolymeraseIIIdeltaN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00384PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7529907226562	2	525.226748	1048.43894	0.16534	8.6841E-05	-0.0054695	-2.8727E-06	0.15987	8.3968E-05	525.226405896614	46.867	0.38876	46.95	46.762	47.151	0.083096					21	14	2	0	0	0	0.35759	1	9256	9256		12.532	0	1	62726	+		2606	13307	1769	1782	3457	3457					-0.08333924192925224
EFVPFLLNF	9	Unmodified	_EFVPFLLNF_					0	0	0		nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3023681640625	2	563.302593	1124.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.13	1	107.13	106.63	107.63	0								0	0	0	0.22204	1	27641	27641		14.838	0.93222	1				2607	3006	1770	1783	3458	3458					0.03332101625483119
EFVPFLLNF	9	Unmodified	_EFVPFLLNF_					0	0	0		nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3023071289062	2	563.302593	1124.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.27	1	107.29	106.79	107.79	0.025711								0	0	0	0.27613	1	27479	27479		3.9444	0.3479	1				2608	3006	1770	1783	3459	3459					0.03332101625483119
EFWRPQKV	8	Unmodified	_EFWRPQKV_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.29541015625	2	545.295633	1088.57671	-0.26275	-0.00014328	0.29949	0.00016331	0.036733	2.003E-05	545.2956856176245	21.721	1.1536	21.721	21.5	22.654	0					314	100	4	0	0	0	0.54097	1	2168	2168		0.69038	0.69038	1	288050	+		2609	9635	1771	1784	3460	3460					0.03596868917043139
EFWTSGCAASF	11	Unmodified	_EFWTSGCAASF_					0	0	0		ENST00000262244.5_1_9:27330036-27330159:-|nuORF	ENST00000262244.5_1_9:27330036-27330159:-|nuORF	ENST00000262244.5_1_9:27330036-27330159:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8055419921875	2	603.250231	1204.48591	0.576	0.00034747	0.65565	0.00039552	1.2316	0.00074299	603.2501344497474	75.634	0.33321	75.634	75.38	75.713	0					21	13	3	0	0	0	0.31001	1	18055	18055		9.3831	0	1	258940			2610	5869	1772	1785	3461	3461					-0.10815387913407903
EFYVREIR	8	Unmodified	_EFYVREIR_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2969360351562	2	556.298373	1110.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.856	1	17.856	17.356	18.356	0								0	0	0	0.38822	1	1004	1004		0.69038	0	1		+		2611	10903	1773	1786	3462	3462					0.031325477088330445
EGAEIRCPD	9	Unmodified	_EGAEIRCPD_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-2|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.23052978515625	2	495.221474	988.428395	0.0052408	2.5954E-06	-0.58769	-0.00029104	-0.58245	-0.00028844	495.2210596047104	27.847	0.72089	27.847	27.603	28.324	0					64	42	2	0	0	0	0.24635	1	3749	3749		10.824	2.2306	1	21794			2612	3946	1774	1787	3463	3463					-0.06628230118985812
EGAGILLTR	9	Unmodified	_EGAGILLTR_					0	0	0		ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2744445800781	2	465.274367	928.53418	-0.16149	-7.5136E-05	-0.27123	-0.00012619	-0.43271	-0.00020133	465.2741464127167	45.59	0.76799	45.59	45.301	46.069	0					45	26	2	0	0	0	0.095436	2	8953	8953;9002		33.445	3.6043	1	359420			2613	2666	1775	1788	3464;3465	3464					0.06705473788804284
EGAGILLTR	9	Unmodified	_EGAGILLTR_					0	0	0		ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.2743835449219	2	465.274367	928.53418	-0.14086	-6.5538E-05	-0.035333	-1.6439E-05	-0.17619	-8.1977E-05	465.2742540213814	45.486	0.58523	45.571	45.299	45.885	0.085621					36	22	2	0	0	0	0.11816	2	8803	8803;8847		28.495	3.0952	1	307990			2614	2666	1775	1788	3466;3467	3466					0.06705473788804284
EGDPKMKL	8	Unmodified	_EGDPKMKL_					0	0	0		nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2	nc|ENSG00000110076|Q9P2S2-2|NRXN2	nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2325439453125	2	459.241678	916.468803	0.021015	9.6508E-06	-0.1559	-7.1594E-05	-0.13488	-6.1944E-05	459.24164586231285	33.025	0.87822	33.025	32.696	33.574	0					42	34	2	0	0	0	0.53423	1	5358	5358		5.2307	5.2307	1	23508			2615	1653	1776	1789	3468	3468					0.0072273627146159924
EGDRQWTLT	9	Unmodified	_EGDRQWTLT_					0	0	0			REV__HLA-F|p.Q245H|1|0.24|ENSG00000204642|chr6:29725155-29725155|G/C|missense_variant	REV__HLA-F|p.Q245H|1|0.24|ENSG00000204642|chr6:29725155-29725155|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2672119140625	2	553.26727	1104.51999	-0.079557	-4.4016E-05	-0.064357	-3.5606E-05	-0.14391	-7.9623E-05	553.2676522191151	24.818	4.3	24.818	24.523	28.823	0					763	304	5	0	0	0	0.27332	1	3180	3180		10.074	0	1	9055400	+		2616	10946	1777	1790	3469	3469					-0.028092234301539065
EGDVELLPSDH	11	Unmodified	_EGDVELLPSDH_					0	0	0		ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF;nc|ENSG00000048028|Q96RU2-3|USP28;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000545608.5_2_11:113688400-113704155:-|nuORF	ENST00000545608.5_2_11:113688400-113704155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.19097900390625	3	404.191059	1209.55135	0.043793	1.7701E-05	0.036332	1.4685E-05	0.080125	3.2386E-05	404.1910674225489	27.051	0.53349	27.051	26.873	27.407	0					88	35	3	0	0	0	0.38806	1	3435	3435		7.0371	1.2537	1	104010			2617	565	1778	1791	3470	3470					-0.045046951867107055
EGDVELLPSDH	11	Unmodified	_EGDVELLPSDH_					0	0	0		ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF;nc|ENSG00000048028|Q96RU2-3|USP28;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000545608.5_2_11:113688400-113704155:-|nuORF	ENST00000545608.5_2_11:113688400-113704155:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	404.191059	1209.55135	-0.30278	-0.00012238	0.35948	0.0001453	0.056699	2.2917E-05	404.19123671632127	26.962	0.43561	27.049	26.875	27.31	0.0867	-0.00084591	0.00025575	NaN	7.0371	89	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96521			2618	565	1778	1791							-0.045046951867107055
EGEKGFDAI	9	Unmodified	_EGEKGFDAI_					0	0	0			REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.232421875	2	483.232364	964.450176	0.016357	7.9041E-06	0.31228	0.0001509	0.32864	0.00015881	483.2324505891253	56.245	0.56341	56.245	56.007	56.57	0					38	20	3	0	0	0	0.03472	1	12243	12243		47.749	3.8904	1	560130	+		2619	13195	1779	1792	3471	3471					-0.03347102098746291
EGHAPAESI	9	Unmodified	_EGHAPAESI_					0	0	0			REV__ENST00000553770.1_1_14:77787419-77791288:+|nuORF	REV__ENST00000553770.1_1_14:77787419-77791288:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.7169189453125	2	455.716882	909.41921	0.4332	0.00019742	-0.49568	-0.00022589	-0.062476	-2.8472E-05	455.7165969166431	37.979	1.1407	37.979	37.729	38.87	0					85	40	4	0	0	0	0.18364	2	6737	6737;6792		20.454	1.1966	1	382780	+		2620	12446	1780	1793	3472;3473	3472					-0.03912255412990362
EGHAPAESI	9	Unmodified	_EGHAPAESI_					0	0	0			REV__ENST00000553770.1_1_14:77787419-77791288:+|nuORF	REV__ENST00000553770.1_1_14:77787419-77791288:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.7166442871094	2	455.716882	909.41921	0.2345	0.00010686	-0.20724	-9.4441E-05	0.02726	1.2423E-05	455.7167153105324	37.885	0.87714	37.97	37.684	38.561	0.08448					64	31	3	0	0	0	0.26684	1	6593	6593		10.824	0.75	1	310400	+		2621	12446	1780	1793	3474	3474					-0.03912255412990362
EGHWSPAPSSR	11	Unmodified	_EGHWSPAPSSR_					0	0	0		nc|ENSG00000131095|P14136-2|GFAP	nc|ENSG00000131095|P14136-2|GFAP	nc|ENSG00000131095|P14136-2|GFAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.14959716796875	3	404.191504	1209.55268	-0.0097572	-3.9438E-06	-1.411	-0.0005703	-1.4207	-0.00057424	404.1909289702221	24.623	0.25685	24.623	24.494	24.751	0					31	18	2	0	0	0	0.31098	1	2729	2729		1.1098	0.41209	1	11014			2622	7501	1781	1794	3475	3475					-0.04371016307300124
EGIPPQQQR	9	Unmodified	_EGIPPQQQR_					0	0	0		ENST00000604306.1_1_14:24684951-24700866:-|nuORF;ENST00000560427.1_1_14:24686335-24687646:-|nuORF;ENST00000527046.5_1_14:24686335-24700866:-|nuORF;ENSG00000129559|ENST00000250495|NEDD8	ENST00000604306.1_1_14:24684951-24700866:-|nuORF	ENST00000604306.1_1_14:24684951-24700866:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7765502929688	2	526.777805	1051.54106	-0.23794	-0.00012534	0.23509	0.00012384	-0.0028556	-1.5043E-06	526.7779557688996	24.758	2.2137	24.758	23.461	25.675	0					347	186	2	0	0	0	0.30005	1	2544	2544		6.7232	0.99131	1	49592			2623	2432	1782	1795	3476	3476					0.0173478666936262
EGKDKHRM	8	Unmodified	_EGKDKHRM_					0	0	0		STRN3|p.N279S|1|0.38|ENSG00000196792|chr14:30936505-30936505|T/C|missense_variant;nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	STRN3|p.N279S|1|0.38|ENSG00000196792|chr14:30936505-30936505|T/C|missense_variant	STRN3|p.N279S|1|0.38|ENSG00000196792|chr14:30936505-30936505|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.753173828125	2	500.753276	999.491998	0.23688	0.00011862	-0.90413	-0.00045275	-0.66725	-0.00033413	500.7528163544198	87.253	1.1234	87.253	86.759	87.883	0					59	45	2	0	0	0	0.53118	1	21721	21721		7.2892	2.5332	1	261780			2624	5248	1783	1796	3477	3477					-0.007768248912157105
EGLEAAERI	9	Unmodified	_EGLEAAERI_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;ENST00000543080.1_1_12:109613818-109617755:+|nuORF	nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2587585449219	2	494.258914	986.503274	-0.014379	-7.1069E-06	-0.12313	-6.0856E-05	-0.13751	-6.7963E-05	494.2588339999909	29.079	1.2462	29.157	28.931	30.177	0.078287					172	77	4	0	0	0	0.2546	1	3865	3865		12.241	0	1	943520			2625	845	1784	1797	3478	3478					0.009482756838906425
EGLVSAQVQL	10	Unmodified	_EGLVSAQVQL_					0	0	0		ENSG00000085741|ENST00000322563|WNT11	ENSG00000085741|ENST00000322563|WNT11	ENSG00000085741|ENST00000322563|WNT11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.291259765625	2	522.290214	1042.56587	0.73722	0.00038504	1.2702	0.00066342	2.0074	0.0010485	522.2907509744982	81.744	0.79066	81.744	81.545	82.336	0					49	27	3	0	0	0	0.11085	1	20000	20000		43.982	0.12355	1	472400			2626	965	1785	1798	3479	3479					0.04629421752088092
EGPTHSTFTF	10	Unmodified	_EGPTHSTFTF_					0	0	0			REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF	REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2566528320312	2	562.256371	1122.49819	0.20706	0.00011642	1.0724	0.00060296	1.2795	0.00071939	562.2564571067053	52.789	0.82945	52.789	52.484	53.314	0					100	31	6	0	0	0	0.01986	1	11174	11174		68.081	5.508	1	482500	+		2627	10644	1786	1799	3480	3480					-0.058160281787195345
EGPTHSTFTF	10	Unmodified	_EGPTHSTFTF_					0	0	0			REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF	REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2562866210938	2	562.256371	1122.49819	0.3909	0.00021979	0.66485	0.00037382	1.0558	0.0005936	562.2563563861265	52.739	0.80525	52.806	52.466	53.272	0.067173					88	33	6	0	0	0	0.078033	1	11003	11003		49.933	8.0934	1	405850	+		2628	10644	1786	1799	3481	3481					-0.058160281787195345
EGPTHSTFTF	10	Unmodified	_EGPTHSTFTF_					0	0	0			REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF	REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	562.256371	1122.49819	0.3909	0.00021979	0.66485	0.00037382	1.0558	0.0005936	562.2563563861265	52.739	0.80525	52.806	52.466	53.272	0.067173	0.0084268	-0.00016679	NaN	68.081	88	33	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405850	+		2629	10644	1786	1799							-0.058160281787195345
EGQKDRNFVV	10	Unmodified	_EGQKDRNFVV_					0	0	0			REV__ENSG00000133657|ENST00000645319|ATP13A3	REV__ENSG00000133657|ENST00000645319|ATP13A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.3074951171875	2	596.309469	1190.60439	0.22983	0.00013705	-3.9865	-0.0023772	-3.7567	-0.0022401	596.3075816628971	73.958	0.83685	74.006	73.587	74.424	0.048546					70	30	3	0	0	0	0.45133	1	17500	17500		4.5289	0	1	628030	+		2630	9153	1787	1800	3482	3482					0.016707273865904426
EGRLRAWH	8	Unmodified	_EGRLRAWH_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7750854492188	2	512.7754	1023.53625	-0.24031	-0.00012323	-1.3808	-0.00070802	-1.6211	-0.00083125	512.7745446218383	22.604	0.26667	22.604	22.44	22.707	0					38	20	2	0	0	0	0.54081	1	2156	2156		0.79363	0	1	21055	+		2631	8369	1788	1801	3483	3483					0.025419473172632934
EGSKKTAK	8	Unmodified	_EGSKKTAK_					0	0	0			REV__ENST00000517746.5_1_8:108264024-108264075:-|nuORF	REV__ENST00000517746.5_1_8:108264024-108264075:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.73089599609375	2	424.745442	847.476331	-0.24946	-0.00010596	-0.40507	-0.00017205	-0.65453	-0.00027801	424.74501154194076	26.584	0.29845	26.671	26.548	26.846	0.0867					32	22	2	0	0	0	0.3576	1	3141	3141		0.79363	0	1	19432	+		2632	12284	1789	1802	3484	3484					0.04649211863363689
EGSNQSDA	8	Unmodified	_EGSNQSDA_					0	0	0			REV__ENST00000492973.1_1_1:186294872-186295316:-|nuORF	REV__ENST00000492973.1_1_1:186294872-186295316:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.14959716796875	2	404.159397	806.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.589	1	24.589	24.089	25.089	0								0	0	0	0.38822	1	2729	2729		0.69038	0	1		+		2633	8039	1790	1803	3485	3485					-0.10665984614809076
EGSPVQQKN	9	Unmodified	_EGSPVQQKN_					0	0	0			REV__PARP1-LIN9|1|fusion	REV__PARP1-LIN9|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7488098144531	2	493.748713	985.482873	-0.11274	-5.5663E-05	0.11423	5.6403E-05	0.0014979	7.396E-07	493.7485919584465	24.774	0.97437	24.774	24.296	25.271	0					136	75	2	0	0	0	0.33704	1	2741	2741		1.8442	0.36234	1	45125	+		2634	9477	1791	1804	3486	3486					-0.010448949759052084
EGVKMNFIDR	10	Unmodified	_EGVKMNFIDR_					0	0	0		ENSG00000123552|ENST00000500704|USP45	ENSG00000123552|ENST00000500704|USP45	ENSG00000123552|ENST00000500704|USP45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.52813720703125	3	403.541257	1207.60194	-0.25384	-0.00010243	0.041318	1.6674E-05	-0.21252	-8.5761E-05	403.5413091992528	42.292	0.41259	42.292	42.162	42.575	0					15	13	2	0	0	0	0.45627	1	8018	8018		1.7423	0	1	32728			2635	2222	1792	1805	3487	3487					0.006445556572771238
EGVKMNFIDR	10	Unmodified	_EGVKMNFIDR_					0	0	0		ENSG00000123552|ENST00000500704|USP45	ENSG00000123552|ENST00000500704|USP45	ENSG00000123552|ENST00000500704|USP45	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.5278015136719	3	403.541257	1207.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.278	1	42.368	41.868	42.868	0.089764								0	0	0	0.33711	1	7853	7853		1.7423	0	1				2636	2222	1792	1805	3488	3488					0.006445556572771238
EGVQKQYYK	9	Unmodified	_EGVQKQYYK_					0	0	0			REV__nc|ENSG00000151466|Q96NL6-3|SCLT1	REV__nc|ENSG00000151466|Q96NL6-3|SCLT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.794921875	2	571.795663	1141.57677	0.28795	0.00016465	-1.3099	-0.00074902	-1.022	-0.00058437	571.7944644753625	37.645	0.42807	37.729	37.505	37.933	0.084476					26	13	3	0	0	0	0.30397	1	6457	6457		6.2058	3.4706	1	31451	+		2637	9647	1793	1806	3489	3489					0.011648241263628734
EGWYSILFTM	10	Unmodified	_EGWYSILFTM_					0	0	0			REV__nc|ENSG00000110719|Q13488-2|TCIRG1	REV__nc|ENSG00000110719|Q13488-2|TCIRG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.1976318359375	3	416.198609	1245.574	-0.37777	-0.00015723	-1.396	-0.00058103	-1.7738	-0.00073826	416.19796474738075	41.595	0.42268	41.595	41.407	41.829	0					32	15	3	0	0	0	0.31803	1	7772	7772		1.5923	0.13716	1	98910	+		2638	8673	1794	1807	3490	3490					-0.03896767322771666
EGWYSILFTM	10	Unmodified	_EGWYSILFTM_					0	0	0			REV__nc|ENSG00000110719|Q13488-2|TCIRG1	REV__nc|ENSG00000110719|Q13488-2|TCIRG1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	416.198609	1245.574	-0.56875	-0.00023671	-1.0238	-0.00042609	-1.5925	-0.0006628	416.198153217651	41.515	0.47029	41.605	41.398	41.869	0.089764	0.0050968	0.00023123	NaN	1.5923	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79621	+		2639	8673	1794	1807							-0.03896767322771666
EHEMFFHL	8	Unmodified	_EHEMFFHL_					0	0	0		chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|15	chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|15	chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2452392578125	2	545.244752	1088.47495	0.26395	0.00014392	1.0351	0.0005644	1.2991	0.00070832	545.245217645744	94.837	0.39666	94.875	94.691	95.088	0.0382					36	16	3	0	0	0	0.53858	1	23861	23861		2.3027	0.65011	1	169380			2640	139	1795	1808	3491	3491					-0.06574745497027834
EHENNTDVL	9	Unmodified	_EHENNTDVL_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.8032836914062	2	535.741085	1069.46762	0.65508	0.00035095	1.3542	0.00072552	2.0093	0.0010765	536.2430605445934	71.297	0.28034	71.356	71.211	71.492	0.058578					13	9	2	0	0	0	0.25051	1	16609	16609		7.9102	2.1497	1	72635			2641	2900	1796	1809	3492	3492					-0.06433806563768485
EHFPRLVTI	9	Unmodified	_EHFPRLVTI_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2852172851562	2	556.316566	1110.61858	0.88345	0.00049148	2.2964	0.0012775	3.1798	0.001769	556.8209273452665	66.05	0.14395	66.05	65.962	66.106	0					6	4	2	0	0	0	0.24929	1	15206	15206		9.3831	0	1	44719	+		2642	9736	1797	1810	3493	3493					0.06769424605590757
EHFQESSL	8	Unmodified	_EHFQESSL_					0	0	0			REV__ENST00000503119.5_1_3:126499264-126676457:+|nuORF	REV__ENST00000503119.5_1_3:126499264-126676457:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7218933105469	2	488.722164	975.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.272	1	34.272	33.772	34.772	0								0	0	0	0.3836	1	5567	5567		21.747	2.3076	1		+		2643	9833	1798	1811	3494	3494					-0.058922727585581924
EHFVEDVT	8	Unmodified	_EHFVEDVT_					0	0	0		nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENSG00000120318|ENST00000239440|ARAP3	nc|ENSG00000120318|Q8WWN8-2|ARAP3	nc|ENSG00000120318|Q8WWN8-2|ARAP3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2422180175781	2	488.224539	974.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.206	1	34.206	33.706	34.706	0								0	0	0	0.38822	1	5547	5547		5.2307	0	1				2644	2117	1799	1812	3495	3495					-0.053713886158107016
EHGPGQHL	8	Unmodified	_EHGPGQHL_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.1867980957031	2	437.711934	873.409314	-0.012377	-5.4175E-06	-0.86267	-0.0003776	-0.87505	-0.00038302	437.7111703495512	39.484	0.33334	39.573	39.455	39.788	0.088562					16	12	2	0	0	0	0.3576	1	6995	6995		2.0598	0.21551	1	20820	+		2645	9591	1800	1813	3496	3496					-0.032453986277232616
EHLLCVRHCV	10	Unmodified	_EHLLCVRHCV_					0	0	0		nc|ENSG00000122735|Q9UI46-2|DNAI1	nc|ENSG00000122735|Q9UI46-2|DNAI1	nc|ENSG00000122735|Q9UI46-2|DNAI1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8074951171875	2	604.804985	1207.59542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.07	1	116.07	115.57	116.57	0								0	0	0	0.33877	1	29575	29575		1.6526	0.17072	1				2646	7493	1801	1814	3497	3497					-7.660775077056314E-05
EHLRKRLML	9	Unmodified	_EHLRKRLML_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3587036132812	2	598.358242	1194.70193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.38	1	100.42	99.924	100.92	0.042839								0	0	0	0.2927	1	25507	25507		0.52476	0	1				2647	7508	1802	1815	3498	3498					0.11236837781757458
EHMGGCHF	8	Unmodified	_EHMGGCHF_					0	0	0		ENST00000494375.2_1_19:42042089-42043170:+|nuORF	ENST00000494375.2_1_19:42042089-42043170:+|nuORF	ENST00000494375.2_1_19:42042089-42043170:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.53997802734375	2	459.173272	916.331992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.865	1	55.93	55.43	56.43	0.065128								0	0	0	0.38822	1	11964	11964		2.8892	0.31174	1				2648	6826	1803	1816	3499	3499					-0.1295207615991103
EHSRFKTDDL	10	Unmodified	_EHSRFKTDDL_					0	0	0			REV__ENST00000548792.1_1_12:120899824-120901956:-|nuORF	REV__ENST00000548792.1_1_12:120899824-120901956:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8067626953125	2	624.304384	1246.59421	-0.12491	-7.7982E-05	0.37017	0.0002311	0.24526	0.00015312	624.3045752239295	39.234	0.94282	39.234	38.539	39.482	0					50	35	2	0	0	0	0.46746	1	7095	7095		1.4819	0.41044	1	37479	+		2649	8696	1804	1817	3500	3500					-0.01921880338613846
EHSVHLIPR	9	Unmodified	_EHSVHLIPR_					0	0	0			REV__nc|ENSG00000135424|Q13683-13|ITGA7	REV__nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.3040161132812	2	544.30399	1086.59343	0.2939	0.00015997	-0.34398	-0.00018723	-0.05008	-2.7259E-05	544.3039458946935	37.456	0.62846	37.456	37.129	37.758	0					39	22	2	0	0	0	0.26684	1	6562	6562		10.824	0.75	1	51572	+		2650	9204	1805	1818	3501	3501					0.053593698029771986
EHWLFHDD	8	Unmodified	_EHWLFHDD_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.734619140625	2	549.735606	1097.45666	-0.055019	-3.0246E-05	-1.7336	-0.000953	-1.7886	-0.00098325	549.7350058604679	30.252	0.7593	30.252	29.721	30.48	0					56	36	3	0	0	0	0.54097	1	4348	4348		0.69038	0.16561	1	28379			2651	5189	1806	1819	3502	3502					-0.08817164147376388
EHYRQPLN	8	Unmodified	_EHYRQPLN_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7647094726562	2	528.764697	1055.51484	-0.043158	-2.282E-05	0.11375	6.0148E-05	0.070595	3.7328E-05	528.7646937791067	25.075	1.1066	25.171	24.928	26.035	0.096075					216	94	4	0	0	0	0.53494	1	2829	2829		4.756	0	1	369930			2652	7459	1807	1820	3503	3503					-0.010694825020891585
EIAEASHIF	9	Unmodified	_EIAEASHIF_					0	0	0			REV__ENST00000567007.5_1_16:67226100-67226544:+|nuORF	REV__ENST00000567007.5_1_16:67226100-67226544:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.757568359375	2	508.756007	1015.49746	0.30379	0.00015455	3.0657	0.0015597	3.3695	0.0017142	509.2586746865693	47.108	0.47446	47.108	46.789	47.263	0					22	16	3	0	0	0	0.29576	1	9447	9447		7.2892	1.5288	1	60854	+		2653	12507	1808	1821	3504	3504					-0.009668228277632807
EIAEASHIF	9	Unmodified	_EIAEASHIF_					0	0	0			REV__ENST00000567007.5_1_16:67226100-67226544:+|nuORF	REV__ENST00000567007.5_1_16:67226100-67226544:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	508.756007	1015.49746	0.30379	0.00015455	3.0657	0.0015597	3.3695	0.0017142	509.2586746865693	47.108	0.47446	47.108	46.789	47.263	0	0.022783	0.00024583	NaN	7.2892	22	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60854	+		2654	12507	1808	1821							-0.009668228277632807
EIAEASHIF	9	Unmodified	_EIAEASHIF_					0	0	0			REV__ENST00000567007.5_1_16:67226100-67226544:+|nuORF	REV__ENST00000567007.5_1_16:67226100-67226544:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	508.756007	1015.49746	0.29169	0.0001484	2.5126	0.0012783	2.8043	0.0014267	508.75748784082214	46.979	0.33163	47.063	46.937	47.269	0.083096	-0.022783	-0.00031692	NaN	7.2892	13	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35471	+		2655	12507	1808	1821							-0.009668228277632807
EIAEAYLGK	9	Unmodified	_EIAEAYLGK_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2655029296875	2	497.266207	992.517862	-0.18185	-9.0427E-05	-0.41583	-0.00020678	-0.59768	-0.00029721	497.2660107768218	42.851	0.38136	42.851	42.682	43.063	0					18	12	2	0	0	0	0.2546	1	8154	8154		12.241	6.0349	1	62530			2656	1646	1809	1822	3505	3505					0.02130347832053303
EIAEAYLGK	9	Unmodified	_EIAEAYLGK_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.25360107421875	2	497.266207	992.517862	-0.072447	-3.6026E-05	-0.32952	-0.00016386	-0.40197	-0.00019989	497.2658627697338	42.842	0.27967	42.932	42.73	43.009	0.089767					20	10	3	0	0	0	0.27929	1	8037	8037		9.3831	0.78985	1	59169			2657	1646	1809	1822	3506	3506					0.02130347832053303
EIAHAYYDM	9	Unmodified	_EIAHAYYDM_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7395629882812	2	556.739499	1111.46445	0.55251	0.0003076	-0.085317	-4.7499E-05	0.46719	0.00026011	556.7389175099191	60.769	1.1417	60.769	60.335	61.477	0					104	40	3	0	0	0	0.22344	2	13695	13590;13695		15.847	5.7733	1	405760			2658	5436	1810	1823	3507;3508	3508					-0.08682772942142947
EIASFDKAKLK	11	Unmodified	_EIASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	417.2431640625	3	417.243206	1248.70779	0.079721	3.3263E-05	-0.23033	-9.6102E-05	-0.15061	-6.2839E-05	417.24308102416506	32.665	1.0196	32.665	32.385	33.404	0					117	45	4	0	0	0	0.26897	1	5084	5084		17.572	7.0444	1	343320			2659	512	1811	1824	3509	3509					0.09338214774402331
EIASFDKAKLK	11	Unmodified	_EIASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.24322509765625	3	417.243206	1248.70779	-0.22731	-9.4842E-05	0.20802	8.6793E-05	-0.01929	-8.0488E-06	417.24327747105195	32.622	1.5668	32.696	31.578	33.145	0.07378					173	75	5	0	0	0	0.26897	2	4935	4935;4975		17.572	9.7259	1	321900			2660	512	1811	1824	3510;3511	3510					0.09338214774402331
EIAYSDVAK	9	Unmodified	_EIAYSDVAK_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.255126953125	2	498.25584	994.497126	0.2487	0.00012392	1.2905	0.00064299	1.5392	0.00076691	498.25585031811653	36.04	0.53207	36.122	35.923	36.455	0.081715					38	20	3	0	0	0	0.29334	1	5970	5970		7.609	2.7119	1	45696			2661	4341	1812	1825	3512	3512					-0.0003424254762194323
EICEFTIEF	9	Unmodified	_EICEFTIEF_					0	0	0			REV__ENST00000511766.2_1_6:119215493-119222091:+|nuORF	REV__ENST00000511766.2_1_6:119215493-119222091:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7571411132812	2	565.757358	1129.50016	0.23437	0.00013259	0.040216	2.2753E-05	0.27458	0.00015535	565.7571262770106	95.111	0.50892	95.111	94.896	95.405	0					51	22	3	0	0	0	0.11022	1	24047	24047		30.225	3.3412	1	159470	+		2662	8699	1813	1826	3513	3513					-0.05940735485091864
EICEFTIEF	9	Unmodified	_EICEFTIEF_					0	0	0			REV__ENST00000511766.2_1_6:119215493-119222091:+|nuORF	REV__ENST00000511766.2_1_6:119215493-119222091:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7572021484375	2	565.757358	1129.50016	0.17999	0.00010183	0.48415	0.00027391	0.66415	0.00037575	565.7573370589886	95.107	0.47227	95.146	94.935	95.407	0.038864					43	19	3	0	0	0	0.1182	1	23877	23877		28.487	6.7402	1	176520	+		2663	8699	1813	1826	3514	3514					-0.05940735485091864
EIEDEEKTI	9	Unmodified	_EIEDEEKTI_					0	0	0		nc|ENSG00000198001|Q9NWZ3-2|IRAK4;ENSG00000198001|ENST00000613694|IRAK4	nc|ENSG00000198001|Q9NWZ3-2|IRAK4	nc|ENSG00000198001|Q9NWZ3-2|IRAK4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2675170898438	2	553.266601	1104.51865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.976	1	29.976	29.476	30.476	0								0	0	0	0.26517	1	4290	4290		6.2058	0.9089	1				2664	5334	1814	1827	3515	3515					-0.02942902309564488
EIEEKNTL	8	Unmodified	_EIEEKNTL_					0	0	0			REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.25323486328125	2	488.253297	974.492041	0.37535	0.00018326	-1.232	-0.00060154	-0.85667	-0.00041827	488.25254488176955	54.039	0.50719	54.104	53.866	54.373	0.065132					27	18	2	0	0	0	0.50815	1	11432	11432		11.64	0.81637	1	97983	+		2665	13059	1815	1828	3516	3516					0.0037745358977190335
EIEGVGAAII	10	Unmodified	_EIEGVGAAII_					0	0	0			REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2739562988281	2	486.274032	970.533512	0.10567	5.1383E-05	-0.019382	-9.425E-06	0.086285	4.1958E-05	486.2739525792687	77.075	0.44107	77.075	76.702	77.144	0					21	15	2	0	0	0	0.38104	1	18583	18583		13.906	0.39817	1	168770	+		2666	11803	1816	1829	3517	3517					0.0470663434908829
EIEGVGAAII	10	Unmodified	_EIEGVGAAII_					0	0	0			REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	486.274032	970.533512	0.10567	5.1383E-05	-0.019382	-9.425E-06	0.086285	4.1958E-05	486.2739525792687	77.075	0.44107	77.075	76.702	77.144	0	0.0078641	2.6601E-05	NaN	13.906	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168770	+		2667	11803	1816	1829							0.0470663434908829
EIEGVGAAII	10	Unmodified	_EIEGVGAAII_					0	0	0			REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	486.274032	970.533512	0.18214	8.8569E-05	-0.10462	-5.0872E-05	0.077522	3.7697E-05	486.27389620365716	77.025	0.26971	77.059	76.848	77.118	0.034477	-0.0078641	-5.6293E-05	NaN	13.906	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122700	+		2668	11803	1816	1829							0.0470663434908829
EIEKERINFSN	11	Unmodified	_EIEKERINFSN_					0	0	0		tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.9033508300781	3	460.236891	1377.68884	0.34759	0.00015997	0.9967	0.00045872	1.3443	0.00061869	460.2376803353002	53.905	0.32601	53.971	53.761	54.087	0.065128					15	11	2	0	0	0	0.31092	1	11379	11379		2.2527	0.79761	1	65088			2669	13481	1817	1830	3518	3518					0.015106334127267473
EIFDMYQNY	9	Unmodified	_EIFDMYQNY_					0	0	0		nc|ENSG00000120662|O75570-2|MTRF1;ENSG00000120662|ENST00000379480|MTRF1;MTRF1|p.S215L|1|0.27|ENSG00000120662|chr13:41252698-41252698|G/A|missense_variant	nc|ENSG00000120662|O75570-2|MTRF1	nc|ENSG00000120662|O75570-2|MTRF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.8904724121094	3	408.174352	1221.50123	0.6558	0.00026768	-1.2387	-0.00050561	-0.58292	-0.00023793	408.1742949574655	57.808	0.33963	57.808	57.541	57.881	0					14	11	2	0	0	0	0.25964	1	12692	12692		1.0715	0.10919	1	42912			2670	2128	1818	1831	3519	3519					-0.10066521116209515
EIFHNLCCRF	10	Unmodified	_EIFHNLCCRF_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3168334960938	2	641.296993	1280.57943	0.34488	0.00022117	3.02	0.0019367	3.3649	0.0021579	641.7998839259209	68.529	0.49016	68.529	68.127	68.617	0					31	16	3	0	0	0	0.44246	1	15950	15950		6.2058	1.3088	1	78739	+		2671	11018	1819	1832	3520	3520					-0.049633670119874296
EIFQNEVAR	9	Unmodified	_EIFQNEVAR_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2848510742188	2	553.285463	1104.55637	-0.11793	-6.5251E-05	-0.22369	-0.00012376	-0.34162	-0.00018902	553.2850863550098	40.459	0.34201	40.459	40.281	40.623	0					13	11	2	0	0	0	0.32614	1	7439	7439		3.2813	0.28607	1	20837			2672	482	1820	1833	3521	3521					0.008276534665810686
EIFRHILQR	9	Unmodified	_EIFRHILQR_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.57177734375	3	404.571768	1210.69348	0.29613	0.00011981	-0.20672	-8.3635E-05	0.089406	3.6171E-05	404.57160203223395	39.227	0.37666	39.227	39.057	39.433	0					18	13	2	0	0	0	0.34289	1	7071	7071		1.0715	0.44464	1	27961			2673	5128	1821	1834	3522	3522					0.09655607136801336
EIGEAHTCE	9	Unmodified	_EIGEAHTCE_					0	0	0		tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1	tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1	tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2486267089844	2	494.705657	987.39676	-0.016219	-8.0237E-06	0.38098	0.00018847	0.36476	0.00018045	494.705717055296	27.324	0.27349	27.324	27.156	27.429	0					26	15	2	0	0	0	0.25875	1	3474	3474		1.8442	0	1	30897			2674	13664	1822	1835	3523	3523					-0.09744222872916453
EIGTNEESEQ	10	Unmodified	_EIGTNEESEQ_					0	0	0			REV__nc|ENSG00000158296|Q8WWT9-2|SLC13A3	REV__nc|ENSG00000158296|Q8WWT9-2|SLC13A3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2615356445312	2	568.241115	1134.46768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.863	1	51.863	51.363	52.363	0								0	0	0	0.33528	1	10879	10879		5.7319	0.43497	1		+		2675	12822	1823	1836	3524	3524					-0.09417851354419327
EIHVSSCSTI	10	Unmodified	_EIHVSSCSTI_					0	0	0		ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2579345703125	2	538.258056	1074.50156	0.21549	0.00011599	-0.38959	-0.0002097	-0.17411	-9.3715E-05	538.257811942649	44.764	0.55616	44.851	44.681	45.237	0.08754					37	20	3	0	0	0	0.44496	1	8643	8643		5.7319	0.43497	1	65029			2676	3270	1824	1837	3525	3525					-0.03271101396353515
EIHYLVYL	8	Unmodified	_EIHYLVYL_					0	0	0			REV__ENST00000529480.1_1_11:57449153-57457721:+|nuORF	REV__ENST00000529480.1_1_11:57449153-57457721:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2680053710938	2	525.286943	1048.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.668	1	92.705	92.205	93.205	0.03653								0	0	0	0.38822	1	23155	23155		2.5775	0.27475	1		+		2677	12346	1825	1838	3526	3526					0.03699528591369017
EIKGFYDPPR	10	Unmodified	_EIKGFYDPPR_					0	0	0		ENST00000490442.5_1_10:70098233-70101119:+|nuORF;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.88043212890625	3	407.880267	1220.61897	0.15126	6.1697E-05	-0.084251	-3.4364E-05	0.067011	2.7332E-05	407.8803539137455	39.802	0.7192	39.802	39.461	40.18	0					59	25	3	0	0	0	0.4676	1	7211	7211		1.4551	0	1	77074			2678	1112	1826	1839	3527	3527					0.01748799534743739
EIKKQLTRRP	10	Unmodified	_EIKKQLTRRP_					0	0	0			REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8929443359375	2	634.893503	1267.77245	0.42067	0.00026708	-0.80348	-0.00051012	-0.38281	-0.00024304	634.8927054282128	101.34	0.66731	101.38	101.1	101.77	0.042656					83	42	3	0	0	0	0.4676	1	25802	25802		2.9952	1.5133	1	252950	+		2679	7744	1827	1840	3528	3528					0.14927834371087556
EIKRSCGGYL	10	Unmodified	_EIKRSCGGYL_					0	0	0			REV__ENST00000498143.5_1_10:75335691-75335772:-|nuORF	REV__ENST00000498143.5_1_10:75335691-75335772:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3089599609375	2	563.289691	1124.56483	0.43058	0.00024254	1.6995	0.00095734	2.1301	0.0011999	563.2904218752066	62.993	0.68811	63.066	62.906	63.594	0.072701					63	28	3	0	0	0	0.34138	1	14184	14184		18.146	1.9972	1	474990	+		2680	12194	1828	1841	3529	3529					0.007528841115572504
EIKRSCGGYL	10	Unmodified	_EIKRSCGGYL_					0	0	0			REV__ENST00000498143.5_1_10:75335691-75335772:-|nuORF	REV__ENST00000498143.5_1_10:75335691-75335772:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	563.289691	1124.56483	0.4619	0.00026018	1.6306	0.00091848	2.0925	0.0011787	563.2902517977793	63.097	0.70614	63.097	62.912	63.618	0	0.015162	-4.439E-05	NaN	18.146	67	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549190	+		2681	12194	1828	1841							0.007528841115572504
EILEWYPVL	9	Unmodified	_EILEWYPVL_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3129272460938	2	581.313158	1160.61176	0.61536	0.00035771	-0.22146	-0.00012874	0.3939	0.00022898	581.3129488923388	96.463	0.4786	96.503	96.305	96.784	0.039772					57	25	3	0	0	0	0.21398	1	24343	24343		16.942	1.6938	1	296920	+		2682	9677	1829	1842	3530	3530					0.0378806693433944
EILLNRISF	9	Unmodified	_EILLNRISF_					0	0	0		ENST00000571688.5_2_16:11642677-11642725:-|nuORF	ENST00000571688.5_2_16:11642677-11642725:-|nuORF	ENST00000571688.5_2_16:11642677-11642725:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7100219726562	2	552.824224	1103.63389	0.62951	0.00034801	-0.94677	-0.00052339	-0.31725	-0.00017539	552.8238287602027	55.418	0.19855	55.418	55.269	55.467	0					9	6	2	0	0	0	0.25051	1	11979	11979		7.9102	0	1	57434			2683	7197	1830	1843	3531	3531					0.08622291402753035
EILRAEELLF	10	Unmodified	_EILRAEELLF_					0	0	0			REV__ENSG00000179104|ENST00000321196|TMTC2	REV__ENSG00000179104|ENST00000321196|TMTC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.56787109375	3	411.567689	1231.68124	0.3852	0.00015853	0.26341	0.00010841	0.6486	0.00026694	411.5678529450948	49.617	3.082	49.617	49.223	52.305	0					311	107	5	0	0	0	0.43573	1	10342	10342		7.4771	7.4771	1	3631300	+		2684	10474	1831	1844	3532	3532					0.07466525883069153
EILSPWTL	8	Unmodified	_EILSPWTL_					0	0	0		nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A	nc|ENSG00000042781|O75445-3|USH2A	nc|ENSG00000042781|O75445-3|USH2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.27752685546875	2	479.765843	957.517133	0.00936	4.4906E-06	-0.41492	-0.00019906	-0.40556	-0.00019457	479.7654139572794	78.313	0.26855	78.313	78.125	78.394	0					15	8	2	0	0	0	0.35759	1	18953	18953		12.532	4.6214	1	68029			2685	546	1832	1845	3533	3533					0.03667553183004202
EILSYITLF	9	Unmodified	_EILSYITLF_					0	0	0			REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8074340820312	2	549.807708	1097.60086	0.46868	0.00025769	-1.1772	-0.00064722	-0.70849	-0.00038953	549.8069302389802	104.18	0.34386	104.22	104.06	104.4	0.037903					44	33	2	0	0	0	0.26684	1	26632	26632		10.824	3.5347	1	116560	+		2686	13193	1833	1846	3534	3534					0.05596664560039244
EINPLLELI	9	Unmodified	_EINPLLELI_					0	0	0			REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.3150634765625	2	527.313158	1052.61176	0.46794	0.00024675	0.10938	5.7677E-05	0.57732	0.00030443	527.3131397525871	93.756	0.57635	93.756	93.573	94.149	0					60	27	3	0	0	0	0.012041	4	23628	23628;23637;23687;23725		63.961	14.406	1	2594900	+		2687	13125	1834	1847	3535;3536;3537;3538	3535					0.08756066934324735
EINPLLELI	9	Unmodified	_EINPLLELI_					0	0	0			REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.3133544921875	2	527.313158	1052.61176	0.36266	0.00019124	0.29787	0.00015707	0.66053	0.00034831	527.3132380550319	93.801	0.66751	93.838	93.581	94.249	0.037369					75	31	4	0	0	0	0.0044564	3	23492	23452;23492;23536		92.653	5.3899	1	1987000	+		2688	13125	1834	1847	3539;3540;3541	3540					0.08756066934324735
EINPLLELI	9	Unmodified	_EINPLLELI_					0	0	0			REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.313158	1052.61176	0.46794	0.00024675	0.10938	5.7677E-05	0.57732	0.00030443	527.3131397525871	93.756	0.57635	93.756	93.573	94.149	0	-0.041019	-9.0971E-05	NaN	92.653	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2594900	+		2689	13125	1834	1847							0.08756066934324735
EINPLLELI	9	Unmodified	_EINPLLELI_					0	0	0			REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	527.313158	1052.61176	0.36266	0.00019124	0.29787	0.00015707	0.66053	0.00034831	527.3132380550319	93.801	0.66751	93.838	93.581	94.249	0.037369	0.041019	0.00010782	NaN	92.653	75	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1987000	+		2690	13125	1834	1847							0.08756066934324735
EINQNVEIQR	10	Unmodified	_EINQNVEIQR_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;BICD2-IPPK|1|fusion	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.825927734375	2	621.825483	1241.63641	-0.25619	-0.00015931	0.077233	4.8026E-05	-0.17896	-0.00011128	621.825606628754	35.326	0.38866	35.326	35.148	35.537	0					23	13	2	0	0	0	0.35616	1	5876	5876		16.566	7.0219	1	48515			2691	88	1835	1848	3542	3542					0.02526095069765688
EINQNVEIQR	10	Unmodified	_EINQNVEIQR_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;BICD2-IPPK|1|fusion	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8255004882812	2	621.825483	1241.63641	-0.094672	-5.8869E-05	-0.21189	-0.00013176	-0.30656	-0.00019063	621.8251955318897	35.249	0.45439	35.328	35.199	35.653	0.078827					24	17	2	0	0	0	0.43771	1	5735	5735		7.1017	2.9122	1	39654			2692	88	1835	1848	3543	3543					0.02526095069765688
EIPAQRFAL	9	Unmodified	_EIPAQRFAL_					0	0	0		ENSG00000188620|ENST00000357878|HMX3	ENSG00000188620|ENST00000357878|HMX3	ENSG00000188620|ENST00000357878|HMX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7955932617188	2	522.795466	1043.57638	0.47252	0.00024703	-0.24561	-0.0001284	0.22691	0.00011863	522.7953392026134	54.996	1.0693	55.061	54.826	55.896	0.065128					123	41	4	0	0	0	0.16036	1	11774	11774		23.148	7.3012	1	4141200			2693	5166	1836	1849	3544	3544					0.056334491971938405
EIPCGDIRL	9	Unmodified	_EIPCGDIRL_					0	0	0		ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4	ENSG00000108576|ENST00000650711|SLC6A4	ENSG00000108576|ENST00000650711|SLC6A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.3003234863281	2	508.265684	1014.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.476	1	66.542	66.042	67.042	0.0653								0	0	0	0.27613	1	15188	15188		3.9444	1.3669	1				2694	1597	1837	1850	3545	3545					0.010138101915003972
EIPRHRHY	8	Unmodified	_EIPRHRHY_					0	0	0			REV__ENSG00000204449|ENST00000448984|TRIM49C	REV__ENSG00000204449|ENST00000448984|TRIM49C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7796630859375	2	554.293956	1106.57336	0.39361	0.00021818	1.4311	0.00079326	1.8247	0.0010114	554.2946829648996	90.458	0.3388	90.458	90.184	90.523	0					20	12	2	0	0	0	0.35759	1	22617	22617		13.508	13.508	1	104950	+		2695	10159	1838	1851	3546	3546					0.02433618863051379
EIQEQLHKQQ	10	Unmodified	_EIQEQLHKQQ_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.6182250976562	2	640.833308	1279.65206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.85	1	64.85	64.35	65.35	0								0	0	0	0.33892	1	14839	14839		1.4819	0	1				2696	5272	1839	1852	3547	3547					0.02342381586800002
EIQIPYVF	8	Unmodified	_EIQIPYVF_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.27545166015625	2	504.773668	1007.53278	0.33222	0.0001677	0.36366	0.00018356	0.69587	0.00035126	504.7737330135363	91.984	0.51357	92.021	91.8	92.314	0.036522					33	17	2	0	0	0	0.50159	1	22983	22983		12.532	0	1	123140			2697	4067	1840	1853	3548	3548					0.02931839700056571
EIQIPYVF	8	Unmodified	_EIQIPYVF_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.773668	1007.53278	0.40423	0.00020404	0.22139	0.00011175	0.62562	0.0003158	504.7736964462047	92.009	0.39788	92.009	91.815	92.213	0	-0.0055536	-5.6683E-05	NaN	12.532	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159160			2698	4067	1840	1853							0.02931839700056571
EIQTGEHW	8	Unmodified	_EIQTGEHW_					0	0	0			REV__nc|ENSG00000185090|Q5VSG8-2|MANEAL	REV__nc|ENSG00000185090|Q5VSG8-2|MANEAL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2323913574219	2	500.230156	998.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.644	1	55.644	55.144	56.144	0								0	0	0	0.38822	1	12033	12033		2.3027	0.24298	1		+		2699	10289	1841	1854	3549	3549					-0.053525665216625384
EISDADTKEVF	11	Unmodified	_EISDADTKEVF_					0	0	0		ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.297119140625	2	627.298433	1252.58231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.176	1	74.176	73.676	74.676	0								0	0	0	0.3362	1	17681	17681		2.086	0	1				2700	4183	1842	1855	3550	3550					-0.033875418724846895
EISHPEHG	8	Unmodified	_EISHPEHG_					0	0	0		ENST00000500626.2_1_1:155619824-155629984:-|nuORF	ENST00000500626.2_1_1:155619824-155629984:-|nuORF	ENST00000500626.2_1_1:155619824-155629984:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2093811035156	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.97	1	96.01	95.51	96.51	0.039772								0	0	0	0.38822	1	24163	24163		2.3027	0.24298	1				2701	6862	1843	1856	3551	3551					-0.05213122210182064
EISLHIVKN	9	Unmodified	_EISLHIVKN_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.8082275390625	2	526.808574	1051.60259	-0.13945	-7.3462E-05	0.047981	2.5277E-05	-0.091466	-4.8185E-05	526.8084662683311	31.028	1.2294	31.028	30.799	32.028	0					117	56	4	0	0	0	0.34704	1	4779	4779		0.52476	0	1	263180			2702	540	1844	1857	3552	3552					0.0788571836869778
EISPKEQL	8	Unmodified	_EISPKEQL_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2583923339844	2	472.258382	942.502212	-0.051321	-2.4237E-05	0.12033	5.6826E-05	0.069007	3.2589E-05	472.2583514896923	51.215	0.99996	51.215	50.886	51.886	0					96	33	4	0	0	0	0.2073	1	10777	10777		41.84	0	1	1070000	+		2703	9557	1845	1858	3553	3553					0.028660613150123027
EISSLADSFQ	10	Unmodified	_EISSLADSFQ_					0	0	0		POU3F4|p.L315F|1|0.52|ENSG00000196767|chrX:83509267-83509267|C/T|missense_variant	POU3F4|p.L315F|1|0.52|ENSG00000196767|chrX:83509267-83509267|C/T|missense_variant	POU3F4|p.L315F|1|0.52|ENSG00000196767|chrX:83509267-83509267|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7472534179688	2	548.761486	1095.50842	0.53575	0.000294	0.97315	0.00053403	1.5089	0.00082802	548.7619251797433	77.943	0.49883	77.978	77.822	78.321	0.034485					22	16	2	0	0	0	0.41688	1	18772	18772		10.074	2.7847	1	177600			2704	7674	1846	1859	3554	3554					-0.03551465244117935
EITDMDTVI	9	Unmodified	_EITDMDTVI_					0	0	0			REV__ENST00000490869.1_1_X:47062096-47065733:+|nuORF	REV__ENST00000490869.1_1_X:47062096-47065733:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7471923828125	2	518.74699	1035.47943	0.15647	8.1167E-05	0.18975	9.8431E-05	0.34622	0.0001796	518.7470137938623	49.372	2.9626	49.449	48.468	51.431	0.076607					245	107	4	0	0	0	0.12809	1	10101	10101		26.884	0	1	1448400	+		2705	9073	1847	1860	3555	3555					-0.03689325864775128
EITGEVHMP	9	Unmodified	_EITGEVHMP_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7425842285156	2	506.742042	1011.46953	0.22525	0.00011414	1.329	0.00067346	1.5543	0.00078761	506.7428718509408	107.49	0.093887	107.51	107.45	107.55	0.022224					10	9	2	0	0	0	0.3354	1	27534	27534		2.0598	1.2661	1	43300			2706	2766	1848	1861	3556	3556					-0.035744690794899725
EITGNTVER	9	Unmodified	_EITGNTVER_					0	0	0		nc|ENSG00000129675|Q15052-2|ARHGEF6;ENSG00000129675|ENST00000250617|ARHGEF6	nc|ENSG00000129675|Q15052-2|ARHGEF6	nc|ENSG00000129675|Q15052-2|ARHGEF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7614440917969	2	509.76182	1017.50909	-0.22407	-0.00011422	-0.15504	-7.9034E-05	-0.37911	-0.00019326	509.7616866742452	25.484	0.37784	25.484	25.311	25.689	0					49	28	2	0	0	0	0.28919	1	2968	2968		8.1555	1.9497	1	54167			2707	2437	1849	1862	3557	3557					0.0010337419556663008
EITGNTVER	9	Unmodified	_EITGNTVER_					0	0	0		nc|ENSG00000129675|Q15052-2|ARHGEF6;ENSG00000129675|ENST00000250617|ARHGEF6	nc|ENSG00000129675|Q15052-2|ARHGEF6	nc|ENSG00000129675|Q15052-2|ARHGEF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.76171875	2	509.76182	1017.50909	-0.068403	-3.4869E-05	-0.3962	-0.00020197	-0.46461	-0.00023684	509.76161082593205	25.316	0.35888	25.412	25.259	25.618	0.096073					61	30	3	0	0	0	0.2359	2	2805	2803;2805		14.405	5.66	1	46443			2708	2437	1849	1862	3558;3559	3559					0.0010337419556663008
EITNRFSQ	8	Unmodified	_EITNRFSQ_					0	0	0			REV__ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant	REV__ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7509765625	2	497.751256	993.487959	-0.065788	-3.2746E-05	1.7032	0.00084776	1.6374	0.00081501	497.7519923718112	27.504	0.66248	27.504	27.156	27.818	0					86	50	2	0	0	0	0.53614	1	3520	3520		3.9444	1.8846	1	135520	+		2709	7723	1850	1863	3560	3560					-0.009045911132830042
EITPPVVLR	9	Unmodified	_EITPPVVLR_					0	0	0		ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	ENST00000434232.1_1_7:36858782-36858980:+|nuORF	ENST00000434232.1_1_7:36858782-36858980:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.3135986328125	2	512.313492	1022.61243	0.63388	0.00032474	-0.35149	-0.00018007	0.28238	0.00014467	512.3133626071602	54.345	0.56847	54.345	53.931	54.499	0					35	21	3	0	0	0	0.091044	1	11612	11612		34.402	19.563	1	173420			2710	4830	1851	1864	3561	3561					0.10202906374047416
EITPPVVLR	9	Unmodified	_EITPPVVLR_					0	0	0		ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	ENST00000434232.1_1_7:36858782-36858980:+|nuORF	ENST00000434232.1_1_7:36858782-36858980:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.3137817382812	2	512.313492	1022.61243	0.55746	0.00028559	-0.11338	-5.8088E-05	0.44407	0.0002275	512.313490127594	54.337	0.41048	54.402	54.087	54.498	0.065128					27	16	2	0	0	0	0.11547	1	11496	11496		29.082	2.1979	1	160110			2711	4830	1851	1864	3562	3562					0.10202906374047416
EIVDRSAPKP	10	Unmodified	_EIVDRSAPKP_					0	0	0		ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A	ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant	ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2783813476562	2	556.308938	1110.60332	0.3956	0.00022007	-2.5145	-0.0013988	-2.1189	-0.0011788	556.3077886627544	86.218	0.57201	86.218	85.985	86.557	0					27	21	2	0	0	0	0.31585	1	21312	21312		10.824	10.824	1	100850			2712	4718	1852	1865	3563	3563					0.0524451301771478
EIVHKYYN	8	Unmodified	_EIVHKYYN_					0	0	0		tr|U7T3B4|U7T3B4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00190PE=4SV=1	tr|U7T3B4|U7T3B4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00190PE=4SV=1	tr|U7T3B4|U7T3B4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00190PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2914428710938	2	533.271824	1064.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.46	1	50.533	50.033	51.033	0.07312								0	0	0	0.38822	1	10320	10320		7.9102	2.6795	1				2713	13703	1853	1866	3564	3564					-0.0005883007379452465
EIVLKIHFE	9	Unmodified	_EIVLKIHFE_					0	0	0		nc|ENSG00000163535|Q562F6-3|SGO2	nc|ENSG00000163535|Q562F6-3|SGO2	nc|ENSG00000163535|Q562F6-3|SGO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.8109130859375	2	564.326599	1126.63865	0.59603	0.00033635	-1.1263	-0.00063563	-0.53032	-0.00029927	564.3256611401935	65.246	0.70143	65.246	64.973	65.675	0					58	25	3	0	0	0	0.23975	1	15013	15013		14.838	3.198	1	256150			2714	7546	1854	1867	3565	3565					0.08039175545513899
EIVWWELF	8	Unmodified	_EIVWWELF_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3052368164062	2	561.286943	1120.55933	0.24877	0.00013963	2.901	0.0016283	3.1498	0.0017679	561.2882799704784	73.084	1.1611	73.137	72.718	73.88	0.052567					79	43	5	0	0	0	0.45077	1	17153	17153		19.439	1.2926	1	613290	+		2715	8473	1855	1868	3566	3566					0.003875285913636617
EIYEYIIFR	9	Unmodified	_EIYEYIIFR_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.2969970703125	2	623.329339	1244.64412	-0.33062	-0.00020608	0.5583	0.000348	0.22768	0.00014192	623.3298059501951	72.353	0.23949	72.353	72.228	72.468	0					16	7	3	0	0	0	0.24929	1	17120	17120		9.3831	0	1	79811			2716	3416	1856	1869	3567	3567					0.03158854337311823
EIYGGSDSRF	10	Unmodified	_EIYGGSDSRF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7593383789062	2	565.759278	1129.504	-0.66622	-0.00037692	-0.95292	-0.00053912	-1.6191	-0.00091604	565.7591413218818	41.776	0.35087	41.776	41.65	42.001	0					21	11	3	0	0	0	0.43771	1	7829	7829		7.1017	4.1065	1	50144			2717	1910	1857	1870	3568	3568					-0.055569296670455515
EIYGGSDSRF	10	Unmodified	_EIYGGSDSRF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7588500976562	2	565.759278	1129.504	-0.44102	-0.00024951	0.061355	3.4712E-05	-0.37966	-0.0002148	565.7592026443856	41.713	0.29702	41.803	41.644	41.941	0.089764					17	11	2	0	0	0	0.43771	1	7672	7672		7.1017	1.8048	1	37823			2718	1910	1857	1870	3569	3569					-0.055569296670455515
EIYRKHSPW	9	Unmodified	_EIYRKHSPW_					0	0	0			REV__nc|ENSG00000178950|O14976-2|GAK	REV__nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8983459472656	3	405.88049	1214.61964	0.072995	2.9627E-05	-3.5555	-0.0014431	-3.4826	-0.0014135	406.21430904213224	52.065	0.7858	52.132	51.938	52.724	0.067173					56	29	3	0	0	0	0.25504	1	10961	10961		2.7352	0.82882	1	145830	+		2719	10465	1858	1871	3570	3570					0.020916389744797925
EIYTKTDSK	9	Unmodified	_EIYTKTDSK_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.77978515625	2	542.779679	1083.5448	-0.33277	-0.00018062	0.34408	0.00018676	0.011305	6.1364E-06	542.7797476103183	18.033	0.2416	18.033	17.905	18.146	0					45	29	2	0	0	0	0.28919	1	1029	1029		8.1555	1.9497	1	17912			2720	4409	1859	1872	3571	3571					0.0063741165256487875
EKCAENPELL	10	Unmodified	_EKCAENPELL_					0	0	0		nc|ENSG00000053524|Q86YR7-2|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.3260498046875	2	573.278989	1144.54342	0.22505	0.00012901	0.41687	0.00023898	0.64191	0.000368	573.2790206190961	95.548	0.59851	95.587	95.239	95.838	0.038864					43	26	2	0	0	0	0.31645	1	24067	24067		10.151	3.7965	1	424580			2721	595	1860	1873	3572	3572					-0.023065457078246254
EKDGERNERL	10	Unmodified	_EKDGERNERL_					0	0	0			REV__ENSG00000262655|ENST00000576479|SPON1	REV__ENSG00000262655|ENST00000576479|SPON1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.220458984375	3	415.877586	1244.61093	0.39512	0.00016432	-2.8718	-0.0011943	-2.4767	-0.00103	415.87618129554556	48.489	0.5512	48.489	48.279	48.83	0					31	18	3	0	0	0	0.31667	1	9921	9921		5.0475	0.64137	1	71035	+		2722	11115	1861	1874	3573	3573					-0.0015937945267978648
EKDGERNERL	10	Unmodified	_EKDGERNERL_					0	0	0			REV__ENSG00000262655|ENST00000576479|SPON1	REV__ENSG00000262655|ENST00000576479|SPON1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.220458984375	3	415.877586	1244.61093	0.13069	5.4351E-05	-2.2231	-0.00092453	-2.0924	-0.00087018	415.8763600268635	48.349	0.53532	48.429	48.248	48.783	0.080029					23	17	2	0	0	0	0.31595	1	9762	9762		7.0371	0	1	66624	+		2723	11115	1861	1874	3574	3574					-0.0015937945267978648
EKDKEDQPQ	9	Unmodified	_EKDKEDQPQ_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7630004882812	2	558.762017	1115.50948	0.8192	0.00045774	1.2936	0.00072283	2.1128	0.0011806	558.7625203361239	65.928	1.3416	65.928	65.645	66.987	0					129	49	4	0	0	0	0.038996	1	15176	15176		45.74	1.9675	1	4348300			2724	728	1862	1875	3575	3575					-0.043652508752529684
EKEAVHYI	8	Unmodified	_EKEAVHYI_					0	0	0			REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF	REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.20703125	2	494.758549	987.502546	0.46128	0.00022822	-2.7922	-0.0013815	-2.331	-0.0011533	494.7575614158366	38.021	0.34353	38.021	37.758	38.101	0					16	11	2	0	0	0	0.3576	1	6651	6651		6.3541	1.1234	1	61616	+		2725	12503	1863	1876	3576	3576					0.008294810348388637
EKEAVHYI	8	Unmodified	_EKEAVHYI_					0	0	0			REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF	REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	494.758549	987.502546	0.43682	0.00021612	-4.1021	-0.0020295	-3.6653	-0.0018134	494.75684839092304	37.913	0.25571	37.998	37.838	38.094	0.084476	-0.011499	-0.00069126	NaN	6.3541	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68441	+		2726	12503	1863	1876							0.008294810348388637
EKEHHRLSAP	10	Unmodified	_EKEHHRLSAP_					0	0	0		ENST00000502488.1_1_4:106448057-106448150:-|nuORF	ENST00000502488.1_1_4:106448057-106448150:-|nuORF	ENST00000502488.1_1_4:106448057-106448150:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778381347656	3	401.879149	1202.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.546	1	23.645	23.145	24.145	0.099739								0	0	0	0.33395	1	2318	2318		3.8763	0	1				2727	6869	1864	1877	3577	3577					0.022415494807546565
EKEMNSELS	9	Unmodified	_EKEMNSELS_					0	0	0		ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2	ENSG00000233917|ENST00000439682|POTEB	ENSG00000233917|ENST00000439682|POTEB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.735107421875	2	533.739696	1065.46484	0.43787	0.00023371	-2.2436	-0.0011975	-1.8058	-0.0009638	534.2415833311159	75.741	0.37197	75.741	75.45	75.822	0					21	16	2	0	0	0	0.24767	1	18146	18146		13.042	0	1	783410			2728	5615	1865	1878	3578	3578					-0.06527398012917729
EKHEEFRKLF	10	Unmodified	_EKHEEFRKLF_					0	0	0		ENSG00000180071|ENST00000399703|ANKRD18A	ENSG00000180071|ENST00000399703|ANKRD18A	ENSG00000180071|ENST00000399703|ANKRD18A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.90325927734375	3	454.910338	1361.70918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.626	1	58.626	58.126	59.126	0								0	0	0	0.33378	1	12936	12936		7.4771	0	1				2729	4798	1866	1879	3579	3579					0.042798488631888176
EKHELLKKRYD	11	Unmodified	_EKHELLKKRYD_					0	0	0			REV__ENST00000458604.6_1_14:53173937-53175208:+|nuORF	REV__ENST00000458604.6_1_14:53173937-53175208:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.9400329589844	3	486.940297	1457.79906	0.2303	0.00011214	2.2172	0.0010797	2.4475	0.0011918	487.2771460299372	47.329	0.7975	47.329	47.028	47.825	0					50	26	3	0	0	0	0.41359	1	9471	9471		1.2148	0.10508	1	177400	+		2730	8399	1867	1880	3580	3580					0.0884747847176186
EKIDQLQEEL	10	Unmodified	_EKIDQLQEEL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.220458984375	3	415.550475	1243.6296	0.36955	0.00015357	-2.9542	-0.0012276	-2.5847	-0.0010741	415.88401272753646	48.817	0.37598	48.817	48.656	49.032	0					18	12	2	0	0	0	0.31735	1	9921	9921		7.4771	2.0744	1	71478			2731	5414	1868	1881	3581	3581					0.017527373985330996
EKIIRRIVN	9	Unmodified	_EKIIRRIVN_					0	0	0			REV__tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	REV__tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8655395507812	2	570.864215	1139.71388	0.25123	0.00014342	1.764	0.001007	2.0152	0.0011504	570.8653119590541	109.35	0.20983	109.37	109.3	109.51	0.019402					37	23	2	0	0	0	0.32112	1	27968	27968		3.9444	0.66309	1	446360	+		2732	13188	1869	1882	3582	3582					0.1496077779661391
EKIKSLGGKF	10	Unmodified	_EKIKSLGGKF_					0	0	0		tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8301391601562	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.642	1	83.664	83.164	84.164	0.021744								0	0	0	0.33599	1	20411	20411		4.897	0.56777	1				2733	13618	1870	1883	3583	3583					0.10094577919812764
EKILRKEYVF	10	Unmodified	_EKILRKEYVF_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.2588195800781	3	442.258967	1323.75507	0.54174	0.00023959	-0.45278	-0.00020025	0.088958	3.9342E-05	442.25868087228366	68.31	0.49016	68.31	68.127	68.617	0					46	16	3	0	0	0	0.4676	1	15968	15968		1.4551	0.34536	1	458980			2734	4314	1871	1884	3584	3584					0.10614494045398715
EKINTIPLISK	11	Unmodified	_EKINTIPLISK_					0	0	0			REV__nc|ENSG00000165309|Q5W041-4|ARMC3	REV__nc|ENSG00000165309|Q5W041-4|ARMC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.3825073242188	2	628.384645	1254.75474	-0.0065763	-4.1324E-06	-2.7997	-0.0017593	-2.8063	-0.0017635	628.3826451920409	87.035	0.14885	87.035	86.992	87.141	0					9	6	2	0	0	0	0.40977	1	21618	21618		2.086	0.75648	1	223240	+		2735	10033	1872	1885	3585	3585					0.1375507432555878
EKINTIPLISK	11	Unmodified	_EKINTIPLISK_					0	0	0			REV__nc|ENSG00000165309|Q5W041-4|ARMC3	REV__nc|ENSG00000165309|Q5W041-4|ARMC3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	628.384645	1254.75474	-0.0065763	-4.1324E-06	-2.7997	-0.0017593	-2.8063	-0.0017635	628.3826451920409	87.035	0.14885	87.035	86.992	87.141	0	0	0	NaN	2.086	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223240	+		2736	10033	1872	1885							0.1375507432555878
EKIQKNKN	8	Unmodified	_EKIQKNKN_					0	0	0		tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2906188964844	2	501.290548	1000.56654	0.30809	0.00015444	0.07228	3.6233E-05	0.38037	0.00019067	501.2904433310158	78.764	2.4673	78.764	77.555	80.022	0					159	85	3	0	0	0	0.53557	4	18862	18862;19035;19125;19372		4.3292	4.3292	1	917630			2737	13605	1873	1886	3586;3587;3588;3589	3586					0.06628261191792717
EKIQKNKN	8	Unmodified	_EKIQKNKN_					0	0	0		tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.29071044921875	2	501.290548	1000.56654	0.77457	0.00038829	-0.082864	-4.1539E-05	0.69171	0.00034675	501.2904008193115	80.898	3.0648	80.898	79.958	83.023	0					366	106	4	0	0	0	0.53026	1	20011	20011		7.9102	1.187	1	2422800			2738	13605	1873	1886	3590	3590					0.06628261191792717
EKIQKNKN	8	Unmodified	_EKIQKNKN_					0	0	0		tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.29058837890625	2	501.290548	1000.56654	0.62702	0.00031432	-0.19464	-9.7573E-05	0.43238	0.00021675	501.2903502694149	83.89	0.63176	83.89	83.55	84.182	0					55	21	3	0	0	0	0.53557	1	20648	20648		4.3292	4.3292	1	306740			2739	13605	1873	1886	3591	3591					0.06628261191792717
EKIQKNKN	8	Unmodified	_EKIQKNKN_					0	0	0		tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2906188964844	2	501.290548	1000.56654	0.54985	0.00027564	0.11799	5.9149E-05	0.66785	0.00033478	501.2905139234308	80.889	3.0008	80.913	80.018	83.019	0.023605					358	107	5	0	0	0	0.53026	1	19916	19916		7.9102	1.187	1	2978500			2740	13605	1873	1886	3592	3592					0.06628261191792717
EKIRNAKRVHF	11	Unmodified	_EKIRNAKRVHF_					0	0	0			REV__ENST00000483488.1_1_10:62637742-62648222:-|nuORF	REV__ENST00000483488.1_1_10:62637742-62648222:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.6080017089844	3	466.608993	1396.80515	0.2206	0.00010294	-2.9426	-0.001373	-2.722	-0.0012701	466.6072090961847	93.836	0.84567	93.874	93.255	94.101	0.038094					98	39	4	0	0	0	0.40904	1	23458	23458		2.2527	0	1	613640	+		2741	8168	1874	1887	3593	3593					0.12262041493909237
EKIRNAKRVHF	11	Unmodified	_EKIRNAKRVHF_					0	0	0			REV__ENST00000483488.1_1_10:62637742-62648222:-|nuORF	REV__ENST00000483488.1_1_10:62637742-62648222:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	466.608993	1396.80515	0.2206	0.00010294	-2.9426	-0.001373	-2.722	-0.0012701	466.6072090961847	93.836	0.84567	93.874	93.255	94.101	0.038094	-0.019354	0.00025692	NaN	2.2527	98	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613640	+		2742	8168	1874	1887							0.12262041493909237
EKIRTKQIQR	10	Unmodified	_EKIRTKQIQR_					0	0	0		ENST00000494069.1_1_3:197566242-197575018:+|nuORF;nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.93218994140625	3	433.933366	1298.77827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.778	1	91.815	91.315	92.315	0.03653								0	0	0	0.33734	1	22886	22886		3.3196	1.99	1				2743	5060	1875	1888	3594	3594					0.14082932882729438
EKITDRNL	8	Unmodified	_EKITDRNL_					0	0	0		ENST00000479043.1_1_3:15718479-15719091:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28	ENST00000479043.1_1_3:15718479-15719091:-|nuORF	ENST00000479043.1_1_3:15718479-15719091:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7770080566406	2	494.774731	987.534909	-0.020977	-1.0379E-05	-0.50785	-0.00025127	-0.52883	-0.00026165	494.7744320623519	27.044	0.59546	27.044	26.834	27.429	0					98	38	4	0	0	0	0.53894	1	3460	3460		2.0598	0	1	185400			2744	5536	1876	1889	3595	3595					0.04064268437844021
EKKALKKKK	9	Unmodified	_EKKALKKKK_					0	0	0		ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3	ENSG00000075856|ENST00000546815|SART3	ENSG00000075856|ENST00000546815|SART3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8792114257812	2	550.879333	1099.74411	0.038711	2.1325E-05	0.1888	0.00010401	0.22751	0.00012533	550.8792598693951	111.96	1.095	111.96	111.82	112.92	0					253	122	3	0	0	0	0.34646	1	28692	28692		0.6015	0.14316	1	5636700			2745	832	1877	1890	3596	3596					0.19823136461786817
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.3703002929688	2	633.367941	1264.72133	0.45363	0.00028731	2.3712	0.0015018	2.8248	0.0017891	633.369147260821	93.422	0.51374	93.459	93.22	93.734	0.037369					32	21	2	0	0	0	0.47199	1	23340	23340		1.4819	0.28856	1	84810			2746	5917	1878	1891	3597	3597					0.09955749281994031
EKKPYFSYF	9	Unmodified	_EKKPYFSYF_					0	0	0		NLRP9|p.S305P|1|0.44|ENSG00000185792|chr19:55732918-55732918|A/G|missense_variant	NLRP9|p.S305P|1|0.44|ENSG00000185792|chr19:55732918-55732918|A/G|missense_variant	NLRP9|p.S305P|1|0.44|ENSG00000185792|chr19:55732918-55732918|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8031616210938	2	604.802957	1207.59136	0.39476	0.00023875	-0.90119	-0.00054504	-0.50643	-0.00030629	604.8025928623886	35.987	0.67709	35.987	35.675	36.352	0					34	26	2	0	0	0	0.34754	1	6184	6184		0.45834	0.057624	1	30678			2747	7647	1879	1892	3598	3598					-0.0041310372548650776
EKKQRGKGCVL	11	Unmodified	_EKKQRGKGCVL_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.3580932617188	2	623.358439	1244.70233	0.17996	0.00011218	-0.42842	-0.00026706	-0.24845	-0.00015488	623.3581607122575	91.94	0.35066	91.94	91.763	92.114	0					20	12	2	0	0	0	0.39744	1	23101	23101		4.897	0.70751	1	163020			2748	5162	1880	1893	3599	3599					0.08976212710967957
EKKQRGKGCVL	11	Unmodified	_EKKQRGKGCVL_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.3582153320312	2	623.358439	1244.70233	0.21707	0.00013531	0.020166	1.257E-05	0.23724	0.00014788	623.3580991380454	91.874	0.44357	91.91	91.746	92.189	0.036522					27	15	3	0	0	0	0.39744	1	22932	22932		4.897	0.70751	1	119940			2749	5162	1880	1893	3600	3600					0.08976212710967957
EKLFEKWPY	9	Unmodified	_EKLFEKWPY_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3241577148438	2	620.324057	1238.63356	-0.14001	-8.6849E-05	0.33854	0.00021	0.19853	0.00012315	620.3241436078395	95.561	1.5417	95.561	94.715	96.257	0					220	70	4	0	0	0	0.32375	1	24181	24181		3.5965	0.60125	1	1467300	+		2750	10042	1881	1894	3601	3601					0.023788716829130863
EKLGPKQVF	9	Unmodified	_EKLGPKQVF_					0	0	0			REV__ENST00000171111.9_2_19:10597191-10597353:-|nuORF	REV__ENST00000171111.9_2_19:10597191-10597353:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3037109375	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.281	1	81.281	80.781	81.781	0								0	0	0	0.24643	1	19854	19854		10.074	3.3508	1		+		2751	11163	1882	1895	3602	3602					0.0762661985700106
EKLHKRGVR	9	Unmodified	_EKLHKRGVR_					0	0	0		nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8455200195312	2	561.846356	1121.67816	0.18338	0.00010303	-0.78305	-0.00043995	-0.59967	-0.00033692	561.8457947596255	90.985	0.84721	91.02	90.683	91.53	0.035446					69	31	3	0	0	0	0.33704	1	22591	22591		1.8442	1.8442	1	374160			2752	4821	1883	1896	3603	3603					0.12218740339585565
EKLHRAAA	8	Unmodified	_EKLHRAAA_					0	0	0		ENST00000475773.5_1_1:29520536-29527072:-|nuORF;ENST00000453185.5_1_1:29522511-29533334:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	448.2590026855469	2	448.259051	894.503549	0.4655	0.00020866	-0.32859	-0.0001473	0.1369	6.1368E-05	448.2588057174568	84.81	0.69587	84.833	84.595	85.291	0.023132					86	32	4	0	0	0	0.52924	1	20742	20742		8.5933	0	1	1870200			2753	6575	1884	1897	3604	3604					0.052077401944075064
EKLHRAAA	8	Unmodified	_EKLHRAAA_					0	0	0		ENST00000475773.5_1_1:29520536-29527072:-|nuORF;ENST00000453185.5_1_1:29522511-29533334:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	448.259051	894.503549	0.87298	0.00039132	-0.71956	-0.00032255	0.15342	6.8772E-05	448.25862171043775	84.859	0.84572	84.859	84.614	85.459	0	0.013113	-0.00016855	NaN	8.5933	79	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1641800			2754	6575	1884	1897							0.052077401944075064
EKLKNGRV	8	Unmodified	_EKLKNGRV_					0	0	0		nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.28778076171875	2	472.287808	942.561064	-0.17512	-8.2705E-05	0.40148	0.00018962	0.22637	0.00010691	472.28788474190725	89.898	1.2848	89.932	89.65	90.935	0.034065					107	52	4	0	0	0	0.53026	1	22302	22302		7.9102	7.9102	1	3238500			2755	4056	1885	1898	3605	3605					0.0874858239999412
EKLKQQGKS	9	Unmodified	_EKLKQQGKS_					0	0	0		ATAD5|p.E1812Q|1|0.15|ENSG00000176208|chr17:30894700-30894700|G/C|missense_variant	ATAD5|p.E1812Q|1|0.15|ENSG00000176208|chr17:30894700-30894700|G/C|missense_variant	ATAD5|p.E1812Q|1|0.15|ENSG00000176208|chr17:30894700-30894700|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037719726562	2	523.303655	1044.59276	0.21754	0.00011384	0.27522	0.00014402	0.49276	0.00025786	523.3036921489829	82.816	2.4442	82.838	81.969	84.413	0.021744					340	93	4	0	0	0	0.27929	1	20152	20152		9.3831	3.1773	1	3939600			2756	62	1886	1899	3606	3606					0.07224530363282611
EKLTHSWTL	9	Unmodified	_EKLTHSWTL_					0	0	0			REV__ENSG00000253251|ENST00000510585|SHLD3	REV__ENSG00000253251|ENST00000510585|SHLD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.798828125	2	557.798206	1113.58186	0.9251	0.00051602	-0.14238	-7.942E-05	0.78271	0.0004366	557.7983064876249	67.301	1.0363	67.366	66.839	67.876	0.065071					67	35	3	0	0	0	0.22083	1	15414	15414		16.149	0.90062	1	416840	+		2757	11081	1887	1900	3607	3607					0.029611279890104925
EKLYEMKKEKW	11	Unmodified	_EKLYEMKKEKW_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2636413574219	3	504.602405	1510.78539	0.27951	0.00014104	1.0114	0.00051034	1.2909	0.00065138	504.93756468874204	68.634	0.34402	68.696	68.508	68.852	0.062126					19	12	2	0	0	0	0.311	1	15848	15848		0.50596	0	1	95339	+		2758	9979	1888	1901	3608	3608					0.05042484648288337
EKNHIKKHQK	10	Unmodified	_EKNHIKKHQK_					0	0	0			REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.0698852539062	2	645.375478	1288.7364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.256	1	70.317	69.817	70.817	0.060562								0	0	0	0.33905	1	16331	16331		1.3295	0.36726	1		+		2759	10892	1889	1902	3609	3609					0.10358377194211243
EKNQDVPF	8	Unmodified	_EKNQDVPF_					0	0	0		ENST00000429901.1_1_7:130737210-130792820:-|nuORF	ENST00000429901.1_1_7:130737210-130792820:-|nuORF	ENST00000429901.1_1_7:130737210-130792820:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7403564453125	2	488.740357	975.46616	0.1061	5.1856E-05	-0.035945	-1.7568E-05	0.070157	3.4289E-05	488.74031642480037	49.841	0.55946	49.914	49.622	50.181	0.07312					40	19	3	0	0	0	0.51415	1	10181	10181		10.824	0	1	313580			2760	6482	1890	1903	3610	3610					-0.022553958618573233
EKPIIKVKVGS	11	Unmodified	_EKPIIKVKVGS_					0	0	0			REV__ENST00000494039.1_X:52241120-52243863:+|nuORF	REV__ENST00000494039.1_X:52241120-52243863:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.380615234375	2	599.381906	1196.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.329	1	98.371	97.871	98.871	0.041931								0	0	0	0.33873	1	24885	24885		1.1933	0.59184	1		+		2761	10942	1891	1904	3611	3611					0.15875395533748815
EKQGLILVSM	10	Unmodified	_EKQGLILVSM_					0	0	0			REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF	REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3062133789062	2	559.317917	1116.62128	0.60632	0.00033913	0.5432	0.00030382	1.1495	0.00064295	559.31814319666	69.488	0.55379	69.488	69.379	69.933	0					39	18	3	0	0	0	0.37232	1	16384	16384		14.838	0.93222	1	323210	+		2762	12473	1892	1905	3612	3612					0.06763511948201995
EKQIKKQR	8	Unmodified	_EKQIKKQR_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3272705078125	2	529.327465	1056.64038	0.19673	0.00010414	-0.85084	-0.00045037	-0.65411	-0.00034624	529.3271432375177	18.053	0.28024	18.137	18.037	18.318	0.083694					57	33	3	0	0	0	0.53894	1	967	967		2.0598	0	1	39184	+		2763	9538	1893	1906	3613	3613					0.11432229354113588
EKQIKKQR	8	Unmodified	_EKQIKKQR_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	529.327465	1056.64038	0.19673	0.00010414	-0.85084	-0.00045037	-0.65411	-0.00034624	529.3271432375177	18.053	0.28024	18.137	18.037	18.318	0.083694	-0.02221	-7.0064E-05	NaN	2.0598	57	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39184	+		2764	9538	1893	1906							0.11432229354113588
EKRDLNGNF	9	Unmodified	_EKRDLNGNF_					0	0	0		nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2518920898438	2	546.775262	1091.53597	0.55709	0.0003046	-4.2772	-0.0023387	-3.7202	-0.0020341	547.2739276237282	99.057	0.14339	99.099	98.997	99.141	0.041939					15	11	2	0	0	0	0.25699	1	25100	25100		3.5965	0	1	29543			2765	2602	1894	1907	3614	3614					-0.006135171932328376
EKRDLNGNF	9	Unmodified	_EKRDLNGNF_					0	0	0		nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	546.775262	1091.53597	0.5176	0.00028301	-2.4086	-0.0013169	-1.891	-0.0010339	546.7740873949898	99.423	0.47917	99.423	99.125	99.604	0	0.16175	0.00013828	NaN	3.5965	64	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308760			2766	2602	1894	1907							-0.006135171932328376
EKVSPSTIW	9	Unmodified	_EKVSPSTIW_					0	0	0			REV__ENST00000536374.1_1_9:80851502-80863830:+|nuORF	REV__ENST00000536374.1_1_9:80851502-80863830:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2638549804688	2	523.779482	1045.54441	-0.0015238	-7.9814E-07	-0.11462	-6.0035E-05	-0.11614	-6.0833E-05	523.7791745790431	72.931	0.27832	72.931	72.775	73.053	0					13	9	2	0	0	0	0.24791	1	17255	17255		10.074	0.6908	1	53633	+		2767	9580	1895	1908	3615	3615					0.023460367233838042
EKWRQPDRF	9	Unmodified	_EKWRQPDRF_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.2290344238281	3	421.219395	1260.63635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.315	1	66.382	65.882	66.882	0.066872								0	0	0	0.28946	1	15140	15140		1.1933	0	1		+		2768	10534	1896	1909	3616	3616					0.01646139860395124
ELAAEALAERS	11	Unmodified	_ELAAEALAERS_					0	0	0			REV__nc|ENSG00000109062|O14745-2|NHERF1	REV__nc|ENSG00000109062|O14745-2|NHERF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2346801757812	2	580.30131	1158.58807	0.39504	0.00022924	-3.6408	-0.0021128	-3.2458	-0.0018835	580.2991502565035	90.741	0.50015	90.741	90.384	90.885	0					22	18	2	0	0	0	0.31003	1	22632	22632		10.151	2.8613	1	142950	+		2769	8629	1897	1910	3617	3617					0.015116014298428126
ELAEHIATL	9	Unmodified	_ELAEHIATL_					0	0	0			REV__ENSG00000142173|ENST00000300527|COL6A2	REV__ENSG00000142173|ENST00000300527|COL6A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2505798339844	2	498.771657	995.528761	0.24438	0.00012189	0.27425	0.00013679	0.51862	0.00025868	498.77174939526276	52.452	0.48488	52.452	52.219	52.704	0					27	16	2	0	0	0	0.21603	1	11036	11036		20.454	4.6064	1	93091	+		2770	9421	1898	1911	3618	3618					0.030817502063428037
ELAGEEEELNA	11	Unmodified	_ELAGEEEELNA_					0	0	0		ENSG00000182472|ENST00000328867|CAPN12	ENSG00000182472|ENST00000328867|CAPN12	ENSG00000182472|ENST00000328867|CAPN12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.27294921875	2	602.272415	1202.53028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.229	1	28.229	27.729	28.729	0								0	0	0	0.33873	1	3775	3775		1.1933	0.59184	1				2771	4876	1899	1912	3619	3619					-0.0628870528621519
ELAGSFPIVL	10	Unmodified	_ELAGSFPIVL_					0	0	0			REV__ENST00000462000.1_1_2:174945834-174988397:-|nuORF	REV__ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2820434570312	2	523.30005	1044.58555	0.16683	8.7302E-05	-0.40132	-0.00021001	-0.23449	-0.00012271	523.2997481297518	89.407	0.43045	89.407	89.244	89.674	0					29	15	2	0	0	0	0.42335	1	22351	22351		9.3831	2.0939	1	141100	+		2772	9313	1900	1913	3620	3620					0.06503797762843533
ELAILNGTYR	10	Unmodified	_ELAILNGTYR_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7839965820312	2	575.316763	1148.61897	0.37087	0.00021337	-0.45289	-0.00026056	-0.082017	-4.7186E-05	575.3169468522589	55.652	0.45899	55.717	55.463	55.922	0.065128					23	16	2	0	0	0	0.3142	1	11868	11868		17.443	3.5366	1	118790			2773	1763	1901	1914	3621	3621					0.05060799534749094
ELAPSDHH	8	Unmodified	_ELAPSDHH_					0	0	0			REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2090759277344	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.239	1	83.261	82.761	83.761	0.021744								0	0	0	0.38822	1	20288	20288		2.5775	0	1		+		2774	8198	1902	1915	3622	3622					-0.05213122210193433
ELAQVIVSR	9	Unmodified	_ELAQVIVSR_					0	0	0		GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant;ENST00000587936.5_1_16:4862027-4863884:-|nuORF;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant	GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.80059814453125	2	507.800749	1013.58694	0.0035499	1.8026E-06	0.61424	0.00031191	0.61779	0.00031371	507.801093742015	45.129	0.46615	45.217	45.011	45.477	0.08754					41	17	3	0	0	0	0.12515	1	8733	8733		27.223	10.11	1	192370			2775	3025	1903	1916	3623	3623					0.0806943185162936
ELARFLFKPNY	11	Unmodified	_ELARFLFKPNY_					0	0	0		nc|ENSG00000077800|O75344-3|FKBP6;nc|ENSG00000077800|O75344-2|FKBP6;ENSG00000077800|ENST00000252037|FKBP6	nc|ENSG00000077800|O75344-3|FKBP6	nc|ENSG00000077800|O75344-3|FKBP6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.74127197265625	3	466.590717	1396.75032	0.12811	5.9773E-05	-0.23271	-0.00010858	-0.10461	-4.8809E-05	466.590642816125	57.654	0.27441	57.722	57.577	57.851	0.068375					14	9	2	0	0	0	0.31097	1	12546	12546		0.45452	0	1	111200			2776	867	1904	1917	3624	3624					0.06781609902668606
ELAYVLVLG	9	Unmodified	_ELAYVLVLG_					0	0	0		ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7713928222656	2	488.789318	975.564084	0.50501	0.00024684	-0.61012	-0.00029822	-0.10511	-5.1375E-05	488.78869361655086	82.248	0.36028	82.248	82.066	82.426	0					18	12	2	0	0	0	0.24263	1	20122	20122		12.532	0	1	51068			2777	4570	1905	1918	3625	3625					0.07532412734133231
ELCEIAKEI	9	Unmodified	_ELCEIAKEI_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2721557617188	2	524.273175	1046.5318	-0.49486	-0.00025944	-0.20965	-0.00010991	-0.70451	-0.00036935	524.2729142183359	41.36	0.55373	41.36	40.996	41.55	0					30	19	2	0	0	0	0.32375	1	7724	7724		3.5965	0	1	38773	+		2778	9922	1906	1919	3626	3626					0.01039257268826077
ELDERYQEG	9	Unmodified	_ELDERYQEG_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.784912109375	2	569.754192	1137.49383	-0.019872	-1.1322E-05	-1.7201	-0.00098003	-1.74	-0.00099135	569.7536471922591	39.959	0.39994	40.048	39.788	40.188	0.088566					23	15	2	0	0	0	0.25746	1	7169	7169		3.2813	0	1	42196			2779	3593	1907	1920	3627	3627					-0.06941537392276587
ELDNHSSAMQI	11	Unmodified	_ELDNHSSAMQI_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.52490234375	3	415.524043	1243.5503	0.37001	0.00015375	-0.63646	-0.00026446	-0.26645	-0.00011072	415.5244003618497	52.497	0.43048	52.497	52.274	52.704	0					27	14	3	0	0	0	0.39906	1	11050	11050		2.084	0	1	54208			2780	1664	1908	1921	3628	3628					-0.061732328272682935
ELDQQIEQPF	10	Unmodified	_ELDQQIEQPF_					0	0	0			REV__ENST00000430010.1_1_2:55451487-55451931:+|nuORF	REV__ENST00000430010.1_1_2:55451487-55451931:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8004760742188	2	623.801143	1245.58773	-0.21893	-0.00013657	0.023373	1.458E-05	-0.19556	-0.00012199	623.8010622559275	86.669	0.51261	86.669	86.438	86.95	0					58	20	4	0	0	0	0.45945	1	21557	21557		2.9952	0	1	2088800	+		2781	11845	1909	1922	3629	3629					-0.025238182900011452
ELERLINSF	9	Unmodified	_ELERLINSF_					0	0	0			REV__ENST00000555337.5_1_14:58675802-58697175:+|nuORF	REV__ENST00000555337.5_1_14:58675802-58697175:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2788696289062	2	560.803488	1119.59242	0.38771	0.00021743	-0.21081	-0.00011823	0.1769	9.9206E-05	560.8031791823905	51.388	0.22154	51.458	51.31	51.531	0.069878					13	8	2	0	0	0	0.2418	1	10621	10621		13.906	5.9959	1	46380	+		2782	12458	1910	1923	3630	3630					0.03741110643454704
ELESFNLNDI	10	Unmodified	_ELESFNLNDI_					0	0	0			REV__tr|U7SUV0|U7SUV0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01017PE=4SV=1	REV__tr|U7SUV0|U7SUV0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01017PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2696533203125	2	597.287868	1192.56118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.2	1	105.24	104.74	105.74	0.034004								0	0	0	0.30402	1	26916	26916		17.113	4.0704	1		+		2783	13203	1911	1924	3631	3631					-0.02739507181308909
ELEYYSKMEEK	11	Unmodified	_ELEYYSKMEEK_					0	0	0			REV__ENSG00000203952|ENST00000695460|CCDC160	REV__ENSG00000203952|ENST00000695460|CCDC160	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.71563720703125	3	483.558642	1447.6541	0.14203	6.8679E-05	-3.8998	-0.0018858	-3.7578	-0.0018171	483.8912951011447	68.393	0.22874	68.393	68.267	68.496	0					12	7	2	0	0	0	0.31096	1	15883	15883		1.4551	0.24029	1	60559	+		2784	10934	1912	1925	3632	3632					-0.051823705102606255
ELFEVDVEIAK	11	Unmodified	_ELFEVDVEIAK_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.3426513671875	2	646.342643	1290.67073	0.75159	0.00048579	-0.68575	-0.00044323	0.065846	4.2559E-05	646.3422895685753	66.551	0.39709	66.551	66.364	66.761	0					27	16	3	0	0	0	0.18269	1	15362	15362		32.898	0	1	206880			2785	6890	1913	1926	3633	3633					0.03702498437996837
ELFEVDVEIAK	11	Unmodified	_ELFEVDVEIAK_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	646.3435668945312	2	646.342643	1290.67073	0.52042	0.00033637	-0.21951	-0.00014188	0.30091	0.00019449	646.3427685010872	66.522	0.37899	66.587	66.425	66.804	0.065071					27	15	3	0	0	0	0.082478	1	15209	15209		49.742	0	1	212110			2786	6890	1913	1926	3634	3634					0.03702498437996837
ELFMMEATL	9	Unmodified	_ELFMMEATL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7587280273438	2	542.756304	1083.49805	0.35662	0.00019356	2.092	0.0011354	2.4486	0.001329	542.757580145085	38.289	0.90396	38.289	37.837	38.741	0					39	30	2	0	0	0	0.32112	1	6748	6748		3.9444	0	1	34482			2787	5216	1914	1927	3635	3635					-0.040354874945478514
ELFPYGNLRI	10	Unmodified	_ELFPYGNLRI_					0	0	0			REV__nc|ENSG00000171365|P51795-1|CLCN5	REV__nc|ENSG00000171365|P51795-1|CLCN5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3357543945312	2	611.334956	1220.65536	0.38606	0.00023601	1.0882	0.00066526	1.4743	0.00090127	611.335355393537	74.715	0.66428	74.764	74.396	75.061	0.048546					48	23	3	0	0	0	0.47161	1	17707	17707		0.40072	0	1	318380	+		2788	10252	1915	1928	3636	3636					0.05385676431478714
ELFRKMVAAV	10	Unmodified	_ELFRKMVAAV_					0	0	0			REV__ENST00000515090.5_1_4:176594985-176622825:-|nuORF	REV__ENST00000515090.5_1_4:176594985-176622825:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.3318481445312	2	582.333901	1162.65325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.706	1	88.706	88.206	89.206	0								0	0	0	0.33892	1	22110	22110		1.4819	0.15237	1		+		2789	12278	1916	1929	3637	3637					0.0784292442201604
ELFSFLQLN	9	Unmodified	_ELFSFLQLN_					0	0	0		ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2473754882812	2	555.795132	1109.57571	0.21307	0.00011842	1.1902	0.00066151	1.4033	0.00077994	555.7968200438252	46.382	0.43994	46.382	46.009	46.449	0					23	14	2	0	0	0	0.25875	1	9222	9222		1.8442	0	1	38724			2790	6409	1917	1930	3638	3638					0.025306097575139574
ELFYFLWL	8	Unmodified	_ELFYFLWL_					0	0	0			REV__ENST00000480769.5_1_1:185266844-185267009:-|nuORF	REV__ENST00000480769.5_1_1:185266844-185267009:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7996826171875	2	565.799686	1129.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.838	1	18.928	18.428	19.428	0.089705								0	0	0	0.38822	1	1134	1134		0.69038	0.16561	1		+		2791	12084	1918	1931	3639	3639					0.025210031137930855
ELGEERLGS	9	Unmodified	_ELGEERLGS_					0	0	0			REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2486267089844	2	495.248546	988.482539	-0.010041	-4.9728E-06	-0.38604	-0.00019118	-0.39608	-0.00019616	495.248337128443	27.102	0.40599	27.102	26.891	27.297	0					49	28	2	0	0	0	0.32375	1	3474	3474		3.5965	1.2938	1	47572	+		2792	10506	1919	1932	3640	3640					-0.012163146957618665
ELGERESTL	9	Unmodified	_ELGERESTL_					0	0	0			REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7493896484375	2	517.261653	1032.50875	0.56964	0.00029465	4.1183	0.0021302	4.6879	0.0024249	517.2636817322416	54.284	0.29431	54.349	54.219	54.514	0.065132					15	11	2	0	0	0	0.24929	1	11456	11456		9.3831	2.0939	1	118040	+		2793	9918	1920	1933	3641	3641					-0.00620045524260604
ELGQGATQAL	10	Unmodified	_ELGQGATQAL_					0	0	0		ENSG00000139438|ENST00000538780|FAM222A	ENSG00000139438|ENST00000538780|FAM222A	ENSG00000139438|ENST00000538780|FAM222A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.25830078125	2	494.258914	986.503274	-0.011214	-5.5425E-06	-0.2043	-0.00010098	-0.21551	-0.00010652	494.2588013736036	29.189	0.78696	29.189	28.971	29.758	0					135	45	4	0	0	0	0.28859	1	4021	4021		23.79	1.0535	1	836010			2794	2971	1921	1934	3642	3642					0.009482756838906425
ELGRFLRSR	9	Unmodified	_ELGRFLRSR_					0	0	0		nc|ENSG00000142513|Q9BZG2-2|ACP4;ENSG00000142513|ENST00000270593|ACP4	nc|ENSG00000142513|Q9BZG2-2|ACP4	nc|ENSG00000142513|Q9BZG2-2|ACP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.330078125	2	567.330539	1132.64652	0.2232	0.00012663	-0.32185	-0.0001826	-0.098654	-5.5969E-05	567.330282121425	86.461	2.8884	86.489	85.666	88.554	0.027367					440	114	5	0	0	0	0.28472	1	21816	21816		8.7454	8.7454	1	7811600			2795	3107	1922	1935	3643	3643					0.0855074758567298
ELGRLQAHE	9	Unmodified	_ELGRLQAHE_					0	0	0		nc|ENSG00000168619|Q9Y3Q7-3|ADAM18;ADAM18|p.C437Lfs*6|1|0.31|ENSG00000168619|chr8:39663871-39663872|-/T|frameshift_variant;nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18	nc|ENSG00000168619|Q9Y3Q7-3|ADAM18	nc|ENSG00000168619|Q9Y3Q7-3|ADAM18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.77783203125	2	526.777805	1051.54106	-0.097532	-5.1377E-05	0.13436	7.0778E-05	0.036829	1.9401E-05	526.7779034384696	24.496	1.6269	24.592	23.498	25.125	0.096075					219	151	2	0	0	0	0.33978	1	2307	2307		1.4819	0.79152	1	30821			2796	10	1923	1936	3644	3644					0.0173478666936262
ELHHFYDEI	9	Unmodified	_ELHHFYDEI_					0	0	0			REV__ENST00000598118.1_1_19:35506495-35517042:+|nuORF	REV__ENST00000598118.1_1_19:35506495-35517042:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7801513671875	2	601.77747	1201.54039	0.30192	0.00018169	3.2176	0.0019363	3.5195	0.002118	601.7792537061717	52.668	0.28566	52.668	52.527	52.813	0					12	9	2	0	0	0	0.32112	1	11146	11146		3.9444	1.2092	1	31208	+		2797	8297	1924	1937	3645	3645					-0.052320527703159314
ELIQDITQR	9	Unmodified	_ELIQDITQR_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3065185546875	2	558.306395	1114.59824	0.29716	0.0001659	-0.66636	-0.00037204	-0.36921	-0.00020613	558.3061888268018	48.857	0.34451	48.857	48.714	49.059	0					23	11	3	0	0	0	0.2359	1	10002	10002		14.405	2.9107	1	112940			2798	3311	1925	1938	3646	3646					0.045522091550765253
ELIQDITQR	9	Unmodified	_ELIQDITQR_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.306396484375	2	558.306395	1114.59824	0.30766	0.00017177	-1.5186	-0.00084784	-1.2109	-0.00067607	558.305944587149	48.765	0.35685	48.841	48.719	49.076	0.076603					19	12	3	0	0	0	0.24273	1	9811	9811		13.615	4.8695	1	82029			2799	3311	1925	1938	3647	3647					0.045522091550765253
ELKELLNNLF	10	Unmodified	_ELKELLNNLF_					0	0	0		tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.5679931640625	3	411.567689	1231.68124	0.3852	0.00015853	0.26341	0.00010841	0.6486	0.00026694	411.5678529450948	49.617	3.082	49.617	49.223	52.305	0					311	107	5	0	0	0	0.43325	1	10161	10161		7.9454	7.9454	1	3631300			2800	13464	1926	1939	3648	3648					0.0746652588309189
ELKKQRTE	8	Unmodified	_ELKKQRTE_					0	0	0			REV__ENSG00000211455|ENST00000389032|STK38L	REV__ENSG00000211455|ENST00000389032|STK38L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3096923828125	2	516.29583	1030.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.026	1	97.026	96.526	97.526	0								0	0	0	0.38822	1	24643	24643		4.3292	0	1		+		2801	10988	1927	1940	3649	3649					0.06304243846238933
ELKLQNVLKH	10	Unmodified	_ELKLQNVLKH_					0	0	0		ENST00000442423.1_1:143721055-143721151:-|nuORF	ENST00000442423.1_1:143721055-143721151:-|nuORF	ENST00000442423.1_1:143721055-143721151:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3565063476562	2	611.36933	1220.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.896	1	89.93	89.43	90.43	0.034065								0	0	0	0.33528	1	22313	22313		5.7319	0.83484	1				2802	6525	1928	1941	3650	3650					0.12257340731162003
ELKNPSVSL	9	Unmodified	_ELKNPSVSL_					0	0	0		ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7797546386719	2	493.779482	985.544411	0.70593	0.00034857	-0.10896	-5.38E-05	0.59697	0.00029477	493.77934318131827	67.683	0.38426	67.746	67.551	67.935	0.063507					22	12	2	0	0	0	0.26104	1	15591	15591		11.495	2.1116	1	261210			2803	4620	1929	1942	3651	3651					0.05106036723384477
ELKPNRLN	8	Unmodified	_ELKPNRLN_					0	0	0			REV__nc|ENSG00000179111|Q9BYE0|HES7	REV__nc|ENSG00000179111|Q9BYE0|HES7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2854919433594	2	492.285266	982.555979	0.33769	0.00016624	0.24039	0.00011834	0.57808	0.00028458	492.2852535841505	88.944	0.66833	88.944	88.679	89.347	0					59	26	3	0	0	0	0.51967	1	22158	22158		10.074	0.6908	1	683420	+		2804	10475	1930	1943	3652	3652					0.06400278537364557
ELKPNRLN	8	Unmodified	_ELKPNRLN_					0	0	0			REV__nc|ENSG00000179111|Q9BYE0|HES7	REV__nc|ENSG00000179111|Q9BYE0|HES7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.28533935546875	2	492.285266	982.555979	0.32157	0.0001583	0.16455	8.1004E-05	0.48612	0.00023931	492.28521283340655	88.901	0.80553	88.934	88.679	89.485	0.032265					67	31	3	0	0	0	0.51967	1	21981	21981		10.074	0.6908	1	753060	+		2805	10475	1930	1943	3653	3653					0.06400278537364557
ELKQHGKKLD	10	Unmodified	_ELKQHGKKLD_					0	0	0			REV__ENST00000545247.6_1_11:18505395-18536277:-|nuORF	REV__ENST00000545247.6_1_11:18505395-18536277:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8563842773438	2	598.343312	1194.67207	0.1876	0.00011225	0.75305	0.00045058	0.94066	0.00056284	598.3437985292404	89.289	0.74078	89.289	88.956	89.697	0					36	28	2	0	0	0	0.31443	1	22199	22199		11.495	0	1	50740	+		2806	8184	1931	1944	3654	3654					0.08252177317444875
ELKQVQGR	8	Unmodified	_ELKQVQGR_					0	0	0			REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant	REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.27740478515625	2	479.277441	956.540328	0.071114	3.4083E-05	0.16688	7.9981E-05	0.23799	0.00011406	479.2774235118305	76.659	0.90096	76.659	76.331	77.231	0					81	31	3	0	0	0	0.53557	1	18572	18572		4.3292	0	1	410100	+		2807	7712	1932	1945	3655	3655					0.06031992020336929
ELKQVQGR	8	Unmodified	_ELKQVQGR_					0	0	0			REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant	REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2772216796875	2	479.277441	956.540328	0.16345	7.8337E-05	0.11031	5.2868E-05	0.27376	0.00013121	479.27738708472776	78.766	3.0918	78.766	77.899	80.99	0					356	107	4	0	0	0	0.53557	1	19713	19713		4.3292	0	1	1643400	+		2808	7712	1932	1945	3656	3656					0.06031992020336929
ELKQVQGR	8	Unmodified	_ELKQVQGR_					0	0	0			REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant	REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774658203125	2	479.277441	956.540328	0.11112	5.3259E-05	0.046609	2.2339E-05	0.15773	7.5598E-05	479.277319851746	81.839	0.92114	81.861	81.503	82.424	0.021866					72	33	3	0	0	0	0.53557	1	19884	19884		4.3292	0	1	258740	+		2809	7712	1932	1945	3657	3657					0.06031992020336929
ELKVPNDKY	9	Unmodified	_ELKVPNDKY_					0	0	0		nc|ENSG00000091483|P07954-2|FH;ENSG00000091483|ENST00000366560|FH	nc|ENSG00000091483|P07954-2|FH	nc|ENSG00000091483|P07954-2|FH	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.830322265625	2	553.298039	1104.58152	0.87127	0.00048207	1.9473	0.0010775	2.8186	0.0015595	553.2985469551587	84.84	0.29118	84.84	84.723	85.014	0					15	11	2	0	0	0	0.20845	1	20977	20977		3.5965	0	1	172820			2810	1062	1933	1946	3658	3658					0.033417082691585165
ELKYDYGI	8	Unmodified	_ELKYDYGI_					0	0	0			REV__ENSG00000068366|ENST00000672401|ACSL4	REV__ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7518310546875	2	500.752933	999.491313	0.23688	0.00011862	-0.21969	-0.00011001	0.017196	8.611E-06	500.7528163544198	87.253	1.1234	87.253	86.759	87.883	0					59	45	2	0	0	0	0.53118	1	21592	21592		7.2892	2.5332	1	261780	+		2811	8129	1934	1947	3659	3659					-0.00845341059277871
ELLCEPNKPQI	11	Unmodified	_ELLCEPNKPQI_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3370971679688	2	642.336838	1282.65912	0.33224	0.00021341	0.11436	7.3455E-05	0.4466	0.00028687	642.3368295276975	74.386	0.68929	74.435	74.156	74.846	0.048546					75	24	4	0	0	0	0.099983	1	17600	17600		45.74	1.9675	1	2025100	+		2812	10750	1935	1948	3660	3660					0.02909978143020453
ELLCFCAR	8	Unmodified	_ELLCFCAR_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.729736328125	2	477.730423	953.446293	-0.40571	-0.00019382	-0.57581	-0.00027508	-0.98152	-0.0004689	477.730061407571	28.218	0.54327	28.218	28.009	28.552	0					57	28	3	0	0	0	0.53858	1	3854	3854		2.3027	0	1	106800	+		2813	10909	1936	1949	3661	3661					-0.03229186397823014
ELLCMSETYER	11	Unmodified	_ELLCMSETYER_					0	0	0			REV__ENST00000569474.5_1_16:67573772-67574407:+|nuORF	REV__ENST00000569474.5_1_16:67573772-67574407:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.5395202636719	3	458.540706	1372.60029	-0.43674	-0.00020026	-1.2745	-0.00058441	-1.7112	-0.00078467	458.5398406191498	41.665	1.8712	41.665	41.075	42.946	0					140	65	4	0	0	0	0.40316	1	7898	7898		3.5927	0.74939	1	145460	+		2814	8024	1937	1950	3662	3662					-0.07110866213611189
ELLFHYVF	8	Unmodified	_ELLFHYVF_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2818603515625	2	534.28166	1066.54877	0.18663	9.9714E-05	-1.0982	-0.00058674	-0.91156	-0.00048703	534.2812443118979	59.347	0.70098	59.347	58.979	59.68	0					72	26	4	0	0	0	0.3056	1	13180	13180		34.187	5.1058	1	621990	+		2815	9227	1938	1951	3663	3663					0.018155459369381788
ELLLTRIFF	9	Unmodified	_ELLLTRIFF_					0	0	0			REV__nc|ENSG00000063127|Q9GZN6-2|SLC6A16	REV__nc|ENSG00000063127|Q9GZN6-2|SLC6A16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.84326171875	2	576.344792	1150.67503	0.46315	0.00026694	0.22251	0.00012824	0.68566	0.00039518	576.3449124581997	88.194	0.37316	88.194	88.139	88.512	0					22	13	2	0	0	0	0.25845	1	21964	21964		2.0598	0.21551	1	131630	+		2816	8088	1939	1952	3664	3664					0.1057205244223951
ELLPEIEFH	9	Unmodified	_ELLPEIEFH_					0	0	0		ENST00000378249.5_1_10:14970078-14970117:-|nuORF	ENST00000378249.5_1_10:14970078-14970117:-|nuORF	ENST00000378249.5_1_10:14970078-14970117:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7772827148438	2	563.792589	1125.57063	0.17788	0.00010029	0.40513	0.00022841	0.58301	0.0003287	563.7925501639469	50.258	0.73833	50.258	50.024	50.762	0					54	26	3	0	0	0	0.30005	1	10410	10410		6.7232	2.3939	1	276090			2817	6266	1940	1953	3665	3665					0.012863058948596517
ELLPNSPSGG	10	Unmodified	_ELLPNSPSGG_					0	0	0			REV__ENSG00000173838|ENST00000311269|MARCHF10	REV__ENSG00000173838|ENST00000311269|MARCHF10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2738952636719	2	485.745639	969.476725	-0.095484	-4.6381E-05	-0.085738	-4.1647E-05	-0.18122	-8.8028E-05	485.74556813852206	39.06	0.54335	39.06	38.89	39.433	0					42	19	3	0	0	0	0.31532	1	7104	7104		13.042	1.4022	1	110220	+		2818	10333	1941	1954	3666	3666					-0.0092341320740843
ELLPNSPSGG	10	Unmodified	_ELLPNSPSGG_					0	0	0			REV__ENSG00000173838|ENST00000311269|MARCHF10	REV__ENSG00000173838|ENST00000311269|MARCHF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2342224121094	2	485.745639	969.476725	0.0028657	1.392E-06	-0.023787	-1.1554E-05	-0.020921	-1.0162E-05	485.74562888192145	38.974	0.52747	39.061	38.885	39.412	0.08688					37	20	2	0	0	0	0.42901	1	6926	6926		8.7454	1.4562	1	81338	+		2819	10333	1941	1954	3667	3667					-0.0092341320740843
ELLQQFASF	9	Unmodified	_ELLQQFASF_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7691040039062	2	541.779482	1081.54441	0.5053	0.00027376	0.6432	0.00034847	1.1485	0.00062223	541.7796354479257	60.497	0.2229	60.497	60.335	60.558	0					12	7	2	0	0	0	0.18364	1	13502	13502		20.454	2.0805	1	39675			2820	3712	1942	1955	3668	3668					0.0069003672338112665
ELLYSLHEF	9	Unmodified	_ELLYSLHEF_					0	0	0			REV__nc|ENSG00000198838|Q15413-3|RYR3	REV__nc|ENSG00000198838|Q15413-3|RYR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.345458984375	2	575.792589	1149.57063	0.60637	0.00034915	-1.6415	-0.00094518	-1.0351	-0.00059603	576.2928001015733	92.884	0.21487	92.884	92.741	92.956	0					9	7	2	0	0	0	0.2491	1	23379	23379		8.5933	0	1	30031	+		2821	10917	1943	1956	3669	3669					0.0018230589485028759
ELMKEKGIYF	10	Unmodified	_ELMKEKGIYF_					0	0	0		nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	nc|ENSG00000085563|P08183-2|ABCB1	nc|ENSG00000085563|P08183-2|ABCB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.3154602050781	3	419.889775	1256.6475	-0.40926	-0.00017184	0.82229	0.00034527	0.41304	0.00017343	419.8901030038245	40.871	0.46897	40.96	40.771	41.24	0.089642					30	18	2	0	0	0	0.31829	1	7432	7432		0.77653	0	1	22502			2822	961	1944	1957	3670	3670					0.029437811196885377
ELPEQFFQL	9	Unmodified	_ELPEQFFQL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7925415039062	2	575.792589	1149.57063	0.18668	0.00010749	-0.066495	-3.8287E-05	0.12019	6.9202E-05	575.7925143326904	89.375	1.176	89.375	88.872	90.048	0					142	45	4	0	0	0	0.0016252	8	22313	22222;22269;22313;22358;22399;22421;22465;22475		118.07	74.21	1	1560800			2823	2843	1945	1958	3671;3672;3673;3674;3675;3676;3677;3678	3673					0.0018230589485028759
ELPEQFFQL	9	Unmodified	_ELPEQFFQL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7926635742188	2	575.792589	1149.57063	0.2158	0.00012425	-0.039177	-2.2558E-05	0.17662	0.0001017	575.7925411692516	89.313	1.0992	89.346	88.934	90.034	0.032265					143	42	4	0	0	0	0.0016252	7	22129	22034;22081;22129;22176;22219;22263;22270		118.07	74.21	1	1341600			2824	2843	1945	1958	3679;3680;3681;3682;3683;3684;3685	3681					0.0018230589485028759
ELPFFKRR	8	Unmodified	_ELPFFKRR_					0	0	0			REV__nc|ENSG00000176927|A4FU69-6|EFCAB5	REV__nc|ENSG00000176927|A4FU69-6|EFCAB5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8050537109375	2	546.819276	1091.624	-0.21249	-0.00011619	-0.83593	-0.0004571	-1.0484	-0.00057329	546.818658100034	40.428	0.72934	40.428	40.208	40.938	0					59	25	4	0	0	0	0.53494	1	7477	7477		4.756	0	1	186510	+		2825	12849	1946	1959	3686	3686					0.0818514818802214
ELPFTLTL	8	Unmodified	_ELPFTLTL_					0	0	0			REV__ENST00000512466.1_1_5:311346-314627:+|nuORF	REV__ENST00000512466.1_1_5:311346-314627:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2681884765625	2	467.268219	932.521884	0.15095	7.0535E-05	0.063205	2.9534E-05	0.21416	0.00010007	467.26816602689877	88.513	0.73232	88.543	88.224	88.957	0.030037					83	29	4	0	0	0	0.42348	2	21936	21936;21984		23.148	0	1	1355300	+		2826	12261	1947	1960	3687;3688	3687					0.052924373257724255
ELPPDHRPF	9	Unmodified	_ELPPDHRPF_					0	0	0		ENST00000475699.5_1_X:153649641-153649923:+|nuORF	ENST00000475699.5_1_X:153649641-153649923:+|nuORF	ENST00000475699.5_1_X:153649641-153649923:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7922973632812	2	554.282723	1106.55089	0.5657	0.00031356	-3.2253	-0.0017877	-2.6596	-0.0014742	554.2806601234547	91.486	0.41003	91.486	91.297	91.707	0					27	15	3	0	0	0	0.2446	1	22968	22968		11.64	1.4569	1	104410			2827	6710	1948	1961	3689	3689					0.001879746747590616
ELPSSLSFPR	10	Unmodified	_ELPSSLSFPR_					0	0	0		ENST00000591625.5_3_17:76993904-77001537:-|nuORF;ENST00000592033.5_1_17:76993706-77001537:-|nuORF;ENST00000592887.1_1_17:76993904-77002146:-|nuORF;ENST00000588075.5_3_17:76993904-76996331:-|nuORF;ENST00000588611.5_1_17:76993706-77001537:-|nuORF	ENST00000591625.5_3_17:76993904-77001537:-|nuORF	ENST00000591625.5_3_17:76993904-77001537:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7748413085938	2	566.803488	1131.59242	0.2616	0.00014828	-0.41617	-0.00023589	-0.15457	-8.761E-05	566.803195832245	57.97	0.47716	57.97	57.74	58.217	0					39	16	3	0	0	0	0.26014	1	12750	12750		32.037	20.543	1	211670			2828	7248	1949	1962	3690	3690					0.03189110643438653
ELPSSLSFPR	10	Unmodified	_ELPSSLSFPR_					0	0	0		ENST00000591625.5_3_17:76993904-77001537:-|nuORF;ENST00000592033.5_1_17:76993706-77001537:-|nuORF;ENST00000592887.1_1_17:76993904-77002146:-|nuORF;ENST00000588075.5_3_17:76993904-76996331:-|nuORF;ENST00000588611.5_1_17:76993706-77001537:-|nuORF	ENST00000591625.5_3_17:76993904-77001537:-|nuORF	ENST00000591625.5_3_17:76993904-77001537:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7750854492188	2	566.803488	1131.59242	0.24553	0.00013917	-0.25079	-0.00014215	-0.0052605	-2.9817E-06	566.8032402056851	57.8	0.59177	57.868	57.697	58.289	0.068371					46	22	3	0	0	0	0.27836	1	12557	12557		32.037	18.131	1	210920			2829	7248	1949	1962	3691	3691					0.03189110643438653
ELQQLEQE	8	Unmodified	_ELQQLEQE_					0	0	0			REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF	REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2820739746094	2	508.748379	1015.4822	-0.31573	-0.00016063	1.0766	0.0005477	0.76083	0.00038707	508.74885833657044	21.97	0.35798	21.97	21.86	22.218	0					42	33	2	0	0	0	0.3576	1	2039	2039		4.756	0	1	23710	+		2830	7942	1950	1963	3692	3692					-0.024917344156051513
ELRHRRIVRQR	11	Unmodified	_ELRHRRIVRQR_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.9781494140625	3	506.978191	1517.91274	0.1259	6.3826E-05	1.0524	0.00053356	1.1783	0.00059739	507.31359153725214	103.56	1.0068	103.56	103.03	104.03	0					122	90	2	0	0	0	0.41856	1	26572	26572		0.08335	0.08335	1	176690	+		2831	7940	1951	1964	3693	3693					0.17450431147995005
ELRKCCAQY	9	Unmodified	_ELRKCCAQY_					0	0	0		nc|ENSG00000182712|P56277|CMC4	nc|ENSG00000182712|P56277|CMC4	nc|ENSG00000182712|P56277|CMC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.276611328125	2	557.262619	1112.51068	0.57134	0.00031839	2.221	0.0012377	2.7924	0.0015561	557.2640440037993	78.773	0.27019	78.803	78.615	78.885	0.030159					13	8	2	0	0	0	0.25376	1	18877	18877		6.2058	1.8765	1	141090			2832	7568	1952	1965	3694	3694					-0.041070313116733814
ELRKCCAQY	9	Unmodified	_ELRKCCAQY_					0	0	0		nc|ENSG00000182712|P56277|CMC4	nc|ENSG00000182712|P56277|CMC4	nc|ENSG00000182712|P56277|CMC4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	557.262619	1112.51068	0.39316	0.00021909	3.2801	0.0018279	3.6732	0.002047	557.2642360900363	78.74	0.30269	78.74	78.625	78.928	0	-0.03142	0.00095869	NaN	6.2058	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136250			2833	7568	1952	1965							-0.041070313116733814
ELRLTNYKP	9	Unmodified	_ELRLTNYKP_					0	0	0			REV__ENSG00000166828|ENST00000300061|SCNN1G	REV__ENSG00000166828|ENST00000300061|SCNN1G	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7749633789062	2	567.319306	1132.62406	0.24844	0.00014094	-0.36248	-0.00020564	-0.11404	-6.4696E-05	567.319283136093	57.938	0.34451	57.938	57.768	58.112	0					15	11	2	0	0	0	0.23975	1	12697	12697		14.838	4.7643	1	83336	+		2834	10093	1953	1966	3695	3695					0.06305103397357925
ELRQGGRKY	9	Unmodified	_ELRQGGRKY_					0	0	0			REV__nc|ENSG00000198925|Q7Z3C6-3|ATG9A	REV__nc|ENSG00000198925|Q7Z3C6-3|ATG9A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8071899414062	2	553.806897	1105.59924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.309	1	19.404	18.904	19.904	0.095232								0	0	0	0.28807	1	1247	1247		1.4819	0	1		+		2835	7725	1954	1967	3696	3696					0.050664683146806055
ELSIPLIK	8	Unmodified	_ELSIPLIK_					0	0	0			REV__ENST00000491850.5_1_9:125006122-125009823:-|nuORF	REV__ENST00000491850.5_1_9:125006122-125009823:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.88690185546875	2	456.791861	911.569169	0.097655	4.4608E-05	2.1266	0.00097143	2.2243	0.001016	456.7930439921087	33.951	0.40165	33.951	33.656	34.058	0					17	14	2	0	0	0	0.3576	1	5444	5444		0.69038	0	1	10397	+		2836	8854	1955	1968	3697	3697					0.1098471659677216
ELSLYWLDN	9	Unmodified	_ELSLYWLDN_					0	0	0			REV__ENSG00000256223|ENST00000248211|ZNF10	REV__ENSG00000256223|ENST00000248211|ZNF10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.760498046875	2	576.782222	1151.54989	0.20684	0.0001193	-0.64022	-0.00036926	-0.43338	-0.00024997	577.2809479089025	91.25	0.11139	91.285	91.197	91.308	0.035446					6	3	2	0	0	0	0.25376	1	22718	22718		6.2058	3.903	1	42921	+		2837	11095	1956	1969	3698	3698					-0.019822844848022214
ELSPPAKDQV	10	Unmodified	_ELSPPAKDQV_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.28759765625	2	542.287671	1082.56079	-0.3443	-0.00018671	-0.29087	-0.00015773	-0.63516	-0.00034444	542.2875836928982	17.341	0.25947	17.341	17.253	17.512	0					47	31	2	0	0	0	0.46827	1	917	917		1.3295	0	1	28128			2838	4413	1957	1970	3699	3699					0.02281117889469897
ELSRRTTFI	9	Unmodified	_ELSRRTTFI_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3165893554688	2	561.81693	1121.61931	0.51407	0.00028881	1.5151	0.00085118	2.0291	0.00114	562.3191969645418	74.023	0.51762	74.071	73.933	74.45	0.048546					30	18	2	0	0	0	0.2446	1	17471	17471		7.2892	7.2892	1	263740			2839	1225	1958	1971	3700	3700					0.06336219254603748
ELSSSSEQR	9	Unmodified	_ELSSSSEQR_					0	0	0			REV__PWP2-TRAPPC10|1|fusion	REV__PWP2-TRAPPC10|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7413635253906	2	511.741085	1021.46762	-0.30093	-0.000154	0.17941	9.181E-05	-0.12153	-6.2189E-05	511.74111831220785	20.431	0.53315	20.431	20.274	20.807	0					129	55	4	0	0	0	0.33849	1	1578	1578		1.6526	0	1	141930	+		2840	12968	1959	1972	3701	3701					-0.04225806563738388
ELSWYNIFL	9	Unmodified	_ELSWYNIFL_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8024291992188	2	592.802957	1183.59136	0.36903	0.00021876	-0.50652	-0.00030027	-0.13749	-8.1503E-05	592.8024008581962	75.83	1.8908	75.875	75.297	77.188	0.044037					214	88	3	0	0	0	0.065541	1	18060	18060		39.957	1.9833	1	3174100			2841	2361	1960	1973	3702	3702					0.006908962745228564
ELTKKWLL	8	Unmodified	_ELTKKWLL_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7902221679688	2	515.81841	1029.62227	0.45195	0.00023313	-0.031417	-1.6205E-05	0.42054	0.00021692	515.8183813146734	68.182	0.44714	68.182	68.049	68.496	0					19	15	2	0	0	0	0.50815	1	15917	15917		11.64	3.047	1	99099			2842	4408	1961	1974	3703	3703					0.10864094379417111
ELVAAPAFF	9	Unmodified	_ELVAAPAFF_					0	0	0			REV__ENST00000560281.6_1_2:66662729-66662783:+|nuORF	REV__ENST00000560281.6_1_2:66662729-66662783:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7576599121094	2	482.760561	963.506569	-0.32177	-0.00015534	-3.9959	-0.001929	-4.3176	-0.0020844	482.7587625616355	40.207	0.40495	40.297	40.113	40.518	0.089489					24	15	2	0	0	0	0.31496	1	7226	7226		4.756	1.1595	1	45571	+		2843	12476	1962	1975	3704	3704					0.023355705285666772
ELVAAPAFF	9	Unmodified	_ELVAAPAFF_					0	0	0			REV__ENST00000560281.6_1_2:66662729-66662783:+|nuORF	REV__ENST00000560281.6_1_2:66662729-66662783:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	482.760561	963.506569	-0.32177	-0.00015534	-3.9959	-0.001929	-4.3176	-0.0020844	482.7587625616355	40.207	0.40495	40.297	40.113	40.518	0.089489	0.0074145	0.00027894	NaN	4.756	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45571	+		2844	12476	1962	1975							0.023355705285666772
ELVEEEPPFL	10	Unmodified	_ELVEEEPPFL_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.7420043945312	2	601.302987	1200.59142	0.37789	0.00022723	0.36586	0.00021999	0.74375	0.00044722	601.303692252082	86.068	2.0459	86.068	85.779	87.825	0					191	81	6	0	0	0	0.30541	1	21638	21638		19.257	0	1	16469000			2845	717	1963	1976	3705	3705					-0.0008514851613199426
ELVEEEPPFL	10	Unmodified	_ELVEEEPPFL_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8058471679688	2	601.302987	1200.59142	0.31209	0.00018766	1.3322	0.00080107	1.6443	0.00098873	601.8056411128822	87.136	1.0272	87.164	86.965	87.993	0.02758					51	40	2	0	0	0	0.27354	1	21419	21419		25.399	3.6527	1	261430			2846	717	1963	1976	3706	3706					-0.0008514851613199426
ELVLRCFSE	9	Unmodified	_ELVLRCFSE_					0	0	0			REV__ENST00000374012.7_1_20:34359909-34389461:+|nuORF	REV__ENST00000374012.7_1_20:34359909-34389461:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.299072265625	2	548.278792	1094.54303	0.23418	0.00012839	-0.96606	-0.00052967	-0.73189	-0.00040128	548.2781022434186	89.635	0.51562	89.669	89.416	89.932	0.034058					45	19	3	0	0	0	0.11547	1	22295	22295		29.082	2.1979	1	360490	+		2847	11624	1964	1977	3707	3707					-0.00045920637035123946
ELWIFWWG	8	Unmodified	_ELWIFWWG_					0	0	0		ENSG00000123066|ENST00000281928|MED13L;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;ENSG00000108510|ENST00000397786|MED13	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7808227539062	2	568.781828	1135.5491	-0.19141	-0.00010887	1.1753	0.0006685	0.98391	0.00055963	568.78237515558	28.306	0.34475	28.306	28.119	28.463	0					29	18	2	0	0	0	0.53817	1	3774	3774		2.5775	0.27475	1	51975			2848	2203	1965	1978	3708	3708					-0.01325034343221887
ELWSIVPSAF	10	Unmodified	_ELWSIVPSAF_					0	0	0			REV__ENST00000565768.1_2_16:56651429-56652137:+|nuORF	REV__ENST00000565768.1_2_16:56651429-56652137:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.2938232421875	2	574.802957	1147.59136	0.12784	7.348E-05	0.068614	3.9439E-05	0.19645	0.00011292	574.8028171074878	91.068	0.63574	91.104	90.828	91.464	0.035446					55	22	3	0	0	0	0.40987	1	22751	22751		10.824	4.6181	1	545850	+		2849	12499	1966	1979	3709	3709					0.02346896274525534
ELWTSYIF	8	Unmodified	_ELWTSYIF_					0	0	0			REV__ENSG00000076864|ENST00000374765|RAP1GAP	REV__ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7639770507812	2	529.7633	1057.51205	0.40199	0.00021296	-0.58596	-0.00031042	-0.18397	-9.746E-05	529.7634129459892	76.356	0.52678	76.395	76.231	76.758	0.03923					43	19	3	0	0	0	0.45077	1	18182	18182		19.439	2.4967	1	442750	+		2850	8205	1967	1980	3710	3710					-0.014407506796487723
ELWTSYIF	8	Unmodified	_ELWTSYIF_					0	0	0			REV__ENSG00000076864|ENST00000374765|RAP1GAP	REV__ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7633056640625	2	529.7633	1057.51205	0.40199	0.00021296	-0.58596	-0.00031042	-0.18397	-9.746E-05	529.7634129459892	76.356	0.52678	76.395	76.231	76.758	0.03923					43	19	3	0	0	0	0.35713	1	18232	18232		14.582	1.0738	1	442750	+		2851	8205	1967	1980	3711	3711					-0.014407506796487723
ELWWAPPSWS	10	Unmodified	_ELWWAPPSWS_					0	0	0		chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|99	chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|99	chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|99	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.537841796875	2	629.798206	1257.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.865	1	67.865	67.365	68.365	0								0	0	0	0.33711	1	15759	15759		3.5965	0.8613	1				2852	159	1968	1981	3712	3712					-0.03662872011022955
ELYAEMESLQF	11	Unmodified	_ELYAEMESLQF_					0	0	0			REV__ENST00000528049.2_1_15:32791963-32792224:-|nuORF	REV__ENST00000528049.2_1_15:32791963-32792224:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.8763427734375	3	453.876083	1358.60642	0.41794	0.00018969	0.11964	5.4301E-05	0.53758	0.00024399	453.8759221166888	37.686	0.81471	37.686	37.393	38.207	0					58	28	3	0	0	0	0.40824	1	6634	6634		2.4348	0.97967	1	33546	+		2853	12339	1969	1982	3713	3713					-0.05854024710470185
ELYHALPF	8	Unmodified	_ELYHALPF_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2574462890625	2	495.258185	988.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.74	1	105.74	105.24	106.24	0								0	0	0	0.38822	1	27247	27247		2.8892	0.31174	1				2854	1006	1970	1983	3714	3714					0.007106863858098222
ELYPLSCLL	9	Unmodified	_ELYPLSCLL_					0	0	0			REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.780029296875	2	525.780636	1049.54672	0.12716	6.6861E-05	0.14118	7.423E-05	0.26834	0.00014109	525.7806814493592	89.659	0.73875	89.659	89.219	89.958	0					38	28	2	0	0	0	0.26684	1	22379	22379		10.824	2.9138	1	86324	+		2855	11950	1971	1984	3715	3715					0.023927491368112896
ELYPLSCLL	9	Unmodified	_ELYPLSCLL_					0	0	0			REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	525.780636	1049.54672	0.12716	6.6861E-05	0.14118	7.423E-05	0.26834	0.00014109	525.7806814493592	89.659	0.73875	89.659	89.219	89.958	0	0	0	NaN	10.824	38	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86324	+		2856	11950	1971	1984							0.023927491368112896
EMAQQLYS	8	Unmodified	_EMAQQLYS_					0	0	0		nc|ENSG00000126733|Q96NX9-3|DACH2;nc|ENSG00000126733|Q96NX9-4|DACH2;ENSG00000126733|ENST00000373125|DACH2	nc|ENSG00000126733|Q96NX9-3|DACH2	nc|ENSG00000126733|Q96NX9-3|DACH2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2388000488281	2	485.220943	968.427332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.46	1	62.46	61.96	62.96	0								0	0	0	0.38822	1	14109	14109		6.7232	0	1				2857	2344	1972	1985	3716	3716					-0.05814444487873516
EMASLQVFE	9	Unmodified	_EMASLQVFE_					0	0	0		nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7394409179688	2	527.2497	1052.48485	-0.15304	-8.0692E-05	0.21582	0.00011379	0.062777	3.3099E-05	527.2497122331868	44.05	0.88486	44.05	43.617	44.502	0					50	30	2	0	0	0	0.24929	1	8400	8400		9.3831	2.66	1	95028			2858	479	1973	1986	3717	3717					-0.03929602282300948
EMCPVLSGIF	10	Unmodified	_EMCPVLSGIF_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.26611328125	2	548.264296	1094.51404	0.44409	0.00024348	3.1841	0.0017457	3.6282	0.0019892	548.2657954455657	75.084	0.46986	75.128	74.943	75.412	0.044037					25	16	2	0	0	0	0.19659	2	17780	17774;17780		34.102	1.797	1	540410	+		2859	10629	1974	1987	3718;3719	3719					-0.029437812576816214
EMCPVLSGIF	10	Unmodified	_EMCPVLSGIF_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7677612304688	2	548.264296	1094.51404	0.44409	0.00024348	3.1841	0.0017457	3.6282	0.0019892	548.2657954455657	75.084	0.46986	75.128	74.943	75.412	0.044037					25	16	2	0	0	0	0.28366	1	17774	17774		26.884	1.4843	1	540410	+		2860	10629	1974	1987	3720	3720					-0.029437812576816214
EMDARLHEDH	10	Unmodified	_EMDARLHEDH_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.18328857421875	3	418.184021	1251.53023	0.68825	0.00028781	-1.7826	-0.00074545	-1.0943	-0.00045764	418.18311035049754	69.168	0.48327	69.168	69.012	69.496	0					23	16	2	0	0	0	0.42335	1	16159	16159		5.4027	0.5057	1	423880			2861	4754	1975	1988	3721	3721					-0.08546983767223537
EMDILQNI	8	Unmodified	_EMDILQNI_					0	0	0			REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2430419921875	2	488.244418	974.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.137	1	26.228	25.728	26.728	0.091507								0	0	0	0.38822	1	3046	3046		2.5775	0	1		+		2862	9618	1976	1989	3722	3722					-0.013975849367511728
EMDILQNI	8	Unmodified	_EMDILQNI_					0	0	0			REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.24261474609375	2	488.244418	974.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.334	1	27.42	26.92	27.92	0.0867								0	0	0	0.38822	1	3387	3387		2.5775	0	1		+		2863	9618	1976	1989	3723	3723					-0.013975849367511728
EMDILQNI	8	Unmodified	_EMDILQNI_					0	0	0			REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2425231933594	2	488.244418	974.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.137	1	29.216	28.716	29.716	0.078287								0	0	0	0.38822	1	3919	3919		2.5775	0	1		+		2864	9618	1976	1989	3724	3724					-0.013975849367511728
EMDILQNI	8	Unmodified	_EMDILQNI_					0	0	0			REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2433776855469	2	488.244418	974.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.57	1	116.58	116.08	117.08	0.013062								0	0	0	0.38822	1	29559	29559		2.5775	0	1		+		2865	9618	1976	1989	3725	3725					-0.013975849367511728
EMGVLTFRDV	10	Unmodified	_EMGVLTFRDV_					0	0	0		ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2740478515625	2	583.797349	1165.58014	0.51479	0.00030053	-0.87415	-0.00051032	-0.35936	-0.00020979	583.7965042356213	61.436	0.30741	61.436	61.189	61.496	0					16	10	2	0	0	0	0.31481	1	13795	13795		15.248	5.1746	1	252770			2866	5289	1977	1990	3726	3726					0.003977509087235376
EMKDIQQAIF	10	Unmodified	_EMKDIQQAIF_					0	0	0		ENST00000558628.1_1_15:33200689-33218453:-|nuORF;nc|ENSG00000248905|Q68DA7-5|FMN1;ENSG00000248905|ENST00000616417|FMN1	ENST00000558628.1_1_15:33200689-33218453:-|nuORF	ENST00000558628.1_1_15:33200689-33218453:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.8107299804688	2	611.810456	1221.60636	0.66998	0.0004099	1.4347	0.00087778	2.1047	0.0012877	611.8112180801687	80.096	0.70193	80.096	79.897	80.598	0					40	23	2	0	0	0	0.35104	1	19477	19477		17.113	3.2068	1	661110			2867	5676	1978	1991	3727	3727					0.004420200801860119
EMNKENEVL	9	Unmodified	_EMNKENEVL_					0	0	0		ENST00000587148.2_1_18:52605184-52610022:-|nuORF;ENSG00000166510|ENST00000591504|CCDC68	ENST00000587148.2_1_18:52605184-52610022:-|nuORF	ENST00000587148.2_1_18:52605184-52610022:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2636108398438	2	553.263339	1104.51212	0.6085	0.00033666	0.39785	0.00022012	1.0064	0.00055678	553.263352706615	91.942	1.0784	91.942	91.435	92.513	0					110	40	4	0	0	0	0.20358	1	23194	23194		18.146	1.0335	1	1048200			2868	4166	1979	1992	3728	3728					-0.035951187419414055
EMNKYYKGVK	10	Unmodified	_EMNKYYKGVK_					0	0	0		tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.7879028320312	2	630.326273	1258.63799	0.44493	0.00028045	-0.96013	-0.0006052	-0.5152	-0.00032475	630.3255951947622	64.483	0.17673	64.552	64.455	64.632	0.068909					12	6	3	0	0	0	0.31747	1	14586	14586		5.7319	0.83484	1	82525			2869	13548	1980	1993	3729	3729					0.01902012834125344
EMPRLFLTSD	10	Unmodified	_EMPRLFLTSD_					0	0	0		ENST00000527357.5_1_11:801679-803120:-|nuORF;ENST00000534525.5_1_11:799959-803120:-|nuORF;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1	ENST00000527357.5_1_11:801679-803120:-|nuORF	ENST00000527357.5_1_11:801679-803120:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5615234375	3	403.537513	1207.59071	0.35571	0.00014354	-0.12899	-5.2054E-05	0.22672	9.1489E-05	403.87181397653814	35.846	0.58405	35.846	35.675	36.259	0					32	22	2	0	0	0	0.31747	1	6113	6113		3.0723	1.1659	1	24317			2870	4706	1981	1994	3730	3730					-0.0047826643683492875
EMPRLFLTSD	10	Unmodified	_EMPRLFLTSD_					0	0	0		ENST00000527357.5_1_11:801679-803120:-|nuORF;ENST00000534525.5_1_11:799959-803120:-|nuORF;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1	ENST00000527357.5_1_11:801679-803120:-|nuORF	ENST00000527357.5_1_11:801679-803120:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	403.537513	1207.59071	-0.024732	-9.9804E-06	-0.10164	-4.1016E-05	-0.12637	-5.0997E-05	403.5374162116152	35.749	0.52439	35.828	35.682	36.206	0.078831	-0.0088605	2.2314E-05	NaN	3.0723	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16462			2871	4706	1981	1994							-0.0047826643683492875
EMQGPDWNL	9	Unmodified	_EMQGPDWNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3173828125	2	545.237124	1088.45969	0.32669	0.00017813	1.0382	0.00056608	1.3649	0.00074421	545.2379236771719	82.44	0.21763	82.461	82.319	82.537	0.021751					12	7	2	0	0	0	0.25174	1	20041	20041		7.2892	1.5288	1	51096			2872	2279	1982	1995	3731	3731					-0.08099657084881073
EMRPWVEATTG	11	Unmodified	_EMRPWVEATTG_					0	0	0		ENST00000444637.6_2_19:36249067-36250693:+|nuORF;ENST00000545674.5_2_19:36250210-36250693:+|nuORF	ENST00000444637.6_2_19:36249067-36250693:+|nuORF	ENST00000444637.6_2_19:36249067-36250693:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.7855224609375	2	638.803162	1275.59177	0.33319	0.00021285	0.10523	6.7221E-05	0.43842	0.00028007	639.3065254078135	62.761	0.1768	62.761	62.66	62.837	0					6	5	2	0	0	0	0.31032	1	14190	14190		7.609	0.88579	1	56955			2873	6537	1983	1996	3732	3732					-0.03500052067943216
EMSKILRRQI	10	Unmodified	_EMSKILRRQI_					0	0	0			REV__nc|ENSG00000181222|P24928|POLR2A	REV__nc|ENSG00000181222|P24928|POLR2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3741455078125	2	637.374089	1272.73363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.62	1	102.62	102.12	103.12	0								0	0	0	0.33762	1	26340	26340		2.9952	0.71247	1		+		2874	10527	1984	1997	3733	3733					0.1081678574507805
EMTKYKPE	8	Unmodified	_EMTKYKPE_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2518310546875	2	513.252243	1024.48993	-0.096837	-4.9702E-05	1.761	0.00090383	1.6641	0.00085412	513.2530338412275	27.414	0.46398	27.501	27.323	27.787	0.0867					82	35	3	0	0	0	0.53557	1	3453	3453		4.3292	0.38484	1	363370			2875	5033	1985	1998	3734	3734					-0.021332984196988036
EMTTSLDTVE	10	Unmodified	_EMTTSLDTVE_					0	0	0		nc|ENSG00000183625|P51677-2|CCR3	nc|ENSG00000183625|P51677-2|CCR3	nc|ENSG00000183625|P51677-2|CCR3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.25341796875	2	563.252637	1124.49072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.914	1	19.914	19.414	20.414	0								0	0	0	0.33877	1	1468	1468		1.6526	0.85899	1				2876	7572	1986	1999	3735	3735					-0.06654548561300544
EMWYSFFW	8	Unmodified	_EMWYSFFW_					0	0	0			REV__ENST00000504087.5_1_4:125588593-125588641:-|nuORF	REV__ENST00000504087.5_1_4:125588593-125588641:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8167114257812	2	598.249503	1194.48445	0.32137	0.00019226	2.8783	0.0017219	3.1996	0.0019142	598.7534758800746	81.8	0.31564	81.821	81.676	81.992	0.021866					17	10	3	0	0	0	0.3576	1	19856	19856		5.7604	1.0044	1	76631	+		2877	12210	1987	2000	3736	3736					-0.1050097721149541
ENAEMDSDS	9	Unmodified	_ENAEMDSDS_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2873229980469	2	499.174386	996.33422	-0.14074	-7.0254E-05	0.98363	0.000491	0.84289	0.00042075	499.174923612926	45.451	0.88005	45.451	45.075	45.955	0					52	30	2	0	0	0	0.25699	1	8969	8969		3.5965	0	1	68406			2878	3719	1988	2001	3737	3737					-0.16409413731764744
ENATGDLATSR	11	Unmodified	_ENATGDLATSR_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF;nc|ENSG00000167642|O43291-2|SPINT2;ENSG00000167642|ENST00000301244|SPINT2	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7735595703125	2	567.772916	1133.53128	-0.21344	-0.00012119	-0.47338	-0.00026877	-0.68682	-0.00038996	567.7726692414954	27.166	0.22456	27.166	27.072	27.297	0					25	14	2	0	0	0	0.40319	1	3462	3462		3.5871	1.0886	1	13450			2879	4220	1989	2002	3738	3738					-0.030144461266672806
ENATGDLATSR	11	Unmodified	_ENATGDLATSR_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF;nc|ENSG00000167642|O43291-2|SPINT2;ENSG00000167642|ENST00000301244|SPINT2	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7724609375	2	567.772916	1133.53128	-0.14575	-8.2755E-05	0.32774	0.00018608	0.18198	0.00010333	567.7731610353387	27.031	0.22845	27.117	27.029	27.257	0.0867					21	15	2	0	0	0	0.40977	1	3297	3297		2.086	0.60411	1	16512			2880	4220	1989	2002	3739	3739					-0.030144461266672806
ENCRPIFA	8	Unmodified	_ENCRPIFA_					0	0	0			REV__ENSG00000152377|ENST00000394945|SPOCK1	REV__ENSG00000152377|ENST00000394945|SPOCK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.7635192871094	2	475.231645	948.448736	-0.29536	-0.00014036	-1.4079	-0.0006691	-1.7033	-0.00080946	475.230790094892	58.524	0.23448	58.524	58.386	58.621	0					11	7	2	0	0	0	0.3576	1	12868	12868		2.5775	0	1	62479	+		2881	9671	1990	2003	3740	3740					-0.027550146685143773
ENCRPIFA	8	Unmodified	_ENCRPIFA_					0	0	0			REV__ENSG00000152377|ENST00000394945|SPOCK1	REV__ENSG00000152377|ENST00000394945|SPOCK1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	475.231645	948.448736	-0.079143	-3.7611E-05	-1.3521	-0.00064257	-1.4313	-0.00068018	475.2306415660632	58.335	0.60221	58.405	58.261	58.863	0.070477	-0.059511	3.1871E-05	NaN	2.5775	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70036	+		2882	9671	1990	2003							-0.027550146685143773
ENDELEWTW	9	Unmodified	_ENDELEWTW_					0	0	0			REV__ZNF646|p.R697W|1|0.14|ENSG00000167395|chr16:31078413-31078413|C/T|missense_variant	REV__ZNF646|p.R697W|1|0.14|ENSG00000167395|chr16:31078413-31078413|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.2564086914062	2	611.256568	1220.49858	-0.46339	-0.00028325	0.16	9.7801E-05	-0.30339	-0.00018545	611.2564976989985	40.887	0.7765	40.887	40.656	41.433	0					63	27	3	0	0	0	0.33704	1	7565	7565		1.8442	0.19162	1	197730	+		2883	13344	1991	2004	3741	3741					-0.10284653249505027
ENDELEWTW	9	Unmodified	_ENDELEWTW_					0	0	0			REV__ZNF646|p.R697W|1|0.14|ENSG00000167395|chr16:31078413-31078413|C/T|missense_variant	REV__ZNF646|p.R697W|1|0.14|ENSG00000167395|chr16:31078413-31078413|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.2564697265625	2	611.256568	1220.49858	-0.21884	-0.00013376	0.10101	6.1741E-05	-0.11783	-7.2024E-05	611.2564678904773	40.779	0.63809	40.869	40.657	41.295	0.089645					51	24	3	0	0	0	0.33704	1	7402	7402		1.8442	0.36234	1	143200	+		2884	13344	1991	2004	3742	3742					-0.10284653249505027
ENDELEWTW	9	Unmodified	_ENDELEWTW_					0	0	0			REV__ZNF646|p.R697W|1|0.14|ENSG00000167395|chr16:31078413-31078413|C/T|missense_variant	REV__ZNF646|p.R697W|1|0.14|ENSG00000167395|chr16:31078413-31078413|C/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	611.256568	1220.49858	-0.46339	-0.00028325	0.16	9.7801E-05	-0.30339	-0.00018545	611.2564976989985	40.887	0.7765	40.887	40.656	41.433	0	0.0093437	2.9761E-05	NaN	1.8442	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197730	+		2885	13344	1991	2004							-0.10284653249505027
ENDTEALEV	9	Unmodified	_ENDTEALEV_					0	0	0		nc|ENSG00000188263|Q6ZVW7-2|IL17REL;ENSG00000188263|ENST00000695950|IL17REL	nc|ENSG00000188263|Q6ZVW7-2|IL17REL	nc|ENSG00000188263|Q6ZVW7-2|IL17REL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.24810791015625	2	510.230019	1018.44548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.584	1	73.584	73.084	74.084	0								0	0	0	0.15116	1	17500	17500		25.399	1.3787	1				2886	5148	1992	2005	3743	3743					-0.06300031032174047
ENEELERPL	9	Unmodified	_ENEELERPL_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.76220703125	2	564.78021	1127.54587	0.0085545	4.8314E-06	-0.35518	-0.0002006	-0.34663	-0.00019577	564.779856948514	34.586	0.43372	34.586	34.42	34.854	0					31	16	3	0	0	0	0.32375	1	5688	5688		3.5965	0.60125	1	61945			2887	558	1993	2006	3744	3744					-0.012803739785113066
ENETHSQLTNL	11	Unmodified	_ENETHSQLTNL_					0	0	0		ENSG00000096872|ENST00000380062|IFT74	ENSG00000096872|ENST00000380062|IFT74	ENSG00000096872|ENST00000380062|IFT74	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3057861328125	2	643.304581	1284.59461	-0.090463	-5.8195E-05	1.2628	0.00081235	1.1723	0.00075415	643.3052797071241	46.026	0.37565	46.026	45.808	46.184	0					19	12	2	0	0	0	0.351	1	9110	9110		12.175	1.3752	1	63491			2888	1113	1994	2007	3745	3745					-0.03630505409410034
ENHDWYCF	8	Unmodified	_ENHDWYCF_					0	0	0		nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2090454101562	2	557.208366	1112.40218	0.54445	0.00030337	0.47861	0.00026669	1.0231	0.00057006	557.2084326035055	100.41	0.43353	100.41	100.26	100.69	0					63	25	5	0	0	0	0.53858	1	25673	25673		2.3027	0	1	139900			2889	457	1995	2008	3746	3746					-0.14952499290461674
ENHDWYCF	8	Unmodified	_ENHDWYCF_					0	0	0		nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.208740234375	2	557.208366	1112.40218	0.70144	0.00039085	0.078411	4.3691E-05	0.77985	0.00043454	557.2083466567395	100.42	0.41871	100.46	100.27	100.69	0.042839					65	24	4	0	0	0	0.53858	2	25512	25512;25553		2.3027	0	1	163270			2890	457	1995	2008	3747;3748	3747					-0.14952499290461674
ENHRQRTGW	9	Unmodified	_ENHRQRTGW_					0	0	0		ENST00000554594.1_1_14:73141042-73159862:-|nuORF	ENST00000554594.1_1_14:73141042-73159862:-|nuORF	ENST00000554594.1_1_14:73141042-73159862:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.2908325195312	2	592.289402	1182.56425	0.16266	9.6343E-05	2.7734	0.0016427	2.9361	0.001739	592.2906630033286	49.28	0.69004	49.357	49.155	49.845	0.076607					61	24	4	0	0	0	0.17247	1	10010	10010		21.747	1.3321	1	434350			2891	7116	1996	2009	3749	3749					-0.019727744932652058
ENKLLHPF	8	Unmodified	_ENKLLHPF_					0	0	0		ENST00000448258.6_1_10:120867502-120877057:+|nuORF;nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10	ENST00000448258.6_1_10:120867502-120877057:+|nuORF	ENST00000448258.6_1_10:120867502-120877057:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2872619628906	2	499.276909	996.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.353	1	45.353	44.853	45.853	0								0	0	0	0.38719	1	8909	8909		15.847	2.3393	1				2892	2102	1997	2010	3750	3750					0.04085777651414446
ENKYKVTSF	9	Unmodified	_ENKYKVTSF_					0	0	0			REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3245849609375	2	558.290214	1114.56587	0.53968	0.0003013	3.6991	0.0020652	4.2388	0.0023665	558.2917103019744	94.301	0.33266	94.339	94.144	94.477	0.038086					14	12	2	0	0	0	0.2446	1	23633	23633		7.2892	2.5332	1	65312	+		2893	8056	1998	2011	3751	3751					0.01317421752082737
ENLNFMAIGF	10	Unmodified	_ENLNFMAIGF_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2763671875	2	578.278792	1154.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.995	1	69.057	68.557	69.557	0.062126								0	0	0	0.30402	1	15946	15946		17.113	0	1				2894	3769	1999	2012	3752	3752					-0.028059206370244283
ENMLLRHGE	9	Unmodified	_ENMLLRHGE_					0	0	0		nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;ENSG00000110066|ENST00000304363|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7717895507812	2	549.771665	1097.52878	0.32841	0.00018055	0.37095	0.00020394	0.69936	0.00038449	549.7718957547993	49.822	0.55109	49.895	49.686	50.237	0.07312					42	19	3	0	0	0	0.16392	1	10128	10128		22.736	0	1	172850			2895	1651	2000	2013	3753	3753					-0.01608573065300334
ENPEAKEF	8	Unmodified	_ENPEAKEF_					0	0	0		nc|ENSG00000204334|A1L162|ERICH2;ENSG00000204334|ENST00000697325|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7711486816406	2	482.224539	962.434526	0.12287	5.9252E-05	-0.09635	-4.6462E-05	0.026522	1.279E-05	482.22425669572243	62.472	0.33052	62.472	62.392	62.722	0					15	11	2	0	0	0	0.32976	1	14104	14104		34.102	0	1	72533			2896	5465	2001	2014	3754	3754					-0.04819388615794651
ENPLGAASAAA	11	Unmodified	_ENPLGAASAAA_					0	0	0		OBSCN-CASZ1|1|fusion;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7647399902344	2	486.243264	970.471974	0.16201	7.8777E-05	-2.707	-0.0013163	-2.545	-0.0012375	486.24179265948754	88.554	0.34745	88.587	88.332	88.679	0.032257					23	14	2	0	0	0	0.30926	1	21830	21830		15.248	5.0651	1	91450			2897	3557	2002	2015	3755	3755					-0.014442973502013956
ENPNEWSQEA	10	Unmodified	_ENPNEWSQEA_					0	0	0		ENSG00000164841|ENST00000297459|TMEM74	ENSG00000164841|ENST00000297459|TMEM74	ENSG00000164841|ENST00000297459|TMEM74	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.313720703125	2	602.249274	1202.484	0.19718	0.00011875	-1.1202	-0.00067463	-0.92301	-0.00055588	602.2486857970792	73.331	0.59617	73.331	73.174	73.77	0					61	21	4	0	0	0	0.31811	1	17510	17510		2.9952	2.9952	1	1552400			2898	4035	2003	2016	3756	3756					-0.10914725397651637
ENQIHRGGQYF	11	Unmodified	_ENQIHRGGQYF_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2178039550781	3	450.217942	1347.632	0.73814	0.00033232	-0.40391	-0.00018185	0.33423	0.00015048	450.21749023434205	54.244	0.24883	54.244	54.098	54.347	0					18	8	3	0	0	0	0.40738	1	11623	11623		2.6312	0	1	74437			2899	3716	2004	2017	3757	3757					-0.027913693531672834
ENQIHRGGQYF	11	Unmodified	_ENQIHRGGQYF_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	450.217942	1347.632	0.43175	0.00019438	-0.33173	-0.00014935	0.10003	4.5034E-05	450.2179788347809	54.221	0.25976	54.286	54.14	54.399	0.065128	0.020936	5.9977E-05	NaN	2.6312	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99679			2900	3716	2004	2017							-0.027913693531672834
ENRGFASQLE	10	Unmodified	_ENRGFASQLE_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7926635742188	2	575.778002	1149.54145	0.35843	0.00020637	1.874	0.001079	2.2324	0.0012854	575.7791712631945	73.576	1.6039	73.629	73.461	75.065	0.052567					121	58	3	0	0	0	0.38912	1	17706	17706		13.042	0	1	1066500	+		2901	10301	2005	2018	3758	3758					-0.027338384014456096
ENRQFEQIS	9	Unmodified	_ENRQFEQIS_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-3|MON2	REV__nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7926025390625	2	575.778002	1149.54145	0.16032	9.231E-05	1.7042	0.00098126	1.8646	0.0010736	575.7790310057512	73.141	0.47903	73.193	72.836	73.315	0.052567					41	16	4	0	0	0	0.11547	1	17210	17210		29.082	3.6823	1	2208200	+		2902	8083	2006	2019	3759	3759					-0.027338384014228723
ENRQFEQIS	9	Unmodified	_ENRQFEQIS_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-3|MON2	REV__nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.79248046875	2	575.778002	1149.54145	0.35843	0.00020637	1.874	0.001079	2.2324	0.0012854	575.7791712631945	73.576	1.6039	73.629	73.461	75.065	0.052567					121	58	3	0	0	0	0.10067	2	17336	17336;17377		32.305	6.9062	1	1066500	+		2903	8083	2006	2019	3760;3761	3760					-0.027338384014228723
ENSPTRQQFH	10	Unmodified	_ENSPTRQQFH_					0	0	0		ENST00000580108.1_1_17:61864409-61875460:+|nuORF;ENSG00000198231|ENST00000389924|DDX42	ENST00000580108.1_1_17:61864409-61875460:+|nuORF	ENST00000580108.1_1_17:61864409-61875460:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8752746582031	3	415.198659	1242.57415	-0.26068	-0.00010824	0.23936	9.938E-05	-0.021328	-8.8556E-06	415.1987454988723	30.703	0.29227	30.778	30.673	30.966	0.075403					23	15	2	0	0	0	0.31834	1	4424	4424		0.69767	0	1	21348			2904	5354	2007	2020	3762	3762					-0.03743631278553039
ENSPTRQQFH	10	Unmodified	_ENSPTRQQFH_					0	0	0		ENST00000580108.1_1_17:61864409-61875460:+|nuORF;ENSG00000198231|ENST00000389924|DDX42	ENST00000580108.1_1_17:61864409-61875460:+|nuORF	ENST00000580108.1_1_17:61864409-61875460:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	415.198659	1242.57415	0.064889	2.6942E-05	-0.19123	-7.94E-05	-0.12634	-5.2458E-05	415.19851762048967	30.719	0.26278	30.719	30.55	30.812	0	-0.029774	-0.00036057	NaN	0.69767	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13623			2905	5354	2007	2020							-0.03743631278553039
ENTFYIYGV	9	Unmodified	_ENTFYIYGV_					0	0	0		ENST00000514430.5_1_4:103553216-103586042:-|nuORF;ENSG00000109323|ENST00000647097|MANBA	ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENST00000514430.5_1_4:103553216-103586042:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8299560546875	2	553.263665	1104.51278	0.51433	0.00028456	-2.1887	-0.0012109	-1.6743	-0.00092634	553.7649386709556	82.342	0.17648	82.364	82.221	82.398	0.021744					9	6	2	0	0	0	0.23975	1	19994	19994		14.838	3.198	1	48350			2906	1631	2008	2021	3763	3763					-0.03529956030570247
ENTVLKATPLF	11	Unmodified	_ENTVLKATPLF_					0	0	0		ENST00000445008.6_1_11:130103249-130104112:-|nuORF	ENST00000445008.6_1_11:130103249-130104112:-|nuORF	ENST00000445008.6_1_11:130103249-130104112:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.56805419921875	3	411.567689	1231.68124	0.3852	0.00015853	0.26341	0.00010841	0.6486	0.00026694	411.5678529450948	49.617	3.082	49.617	49.223	52.305	0					311	107	5	0	0	0	0.35574	1	10212	10212		11.631	11.631	1	3631300			2907	6538	2009	2022	3764	3764					0.07466525883069153
ENVEKIRNQV	10	Unmodified	_ENVEKIRNQV_					0	0	0			REV__nc|ENSG00000197323|Q9UPN9-2|TRIM33	REV__nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.2261962890625	3	410.226326	1227.65715	0.5319	0.0002182	-0.76386	-0.00031336	-0.23196	-9.5156E-05	410.2260419051037	38.232	0.60711	38.232	38.05	38.657	0					57	20	4	0	0	0	0.46025	1	6770	6770		2.8433	1.3882	1	124420	+		2908	10850	2010	2023	3765	3765					0.052426854494115105
ENWHVYNEI	9	Unmodified	_ENWHVYNEI_					0	0	0			REV__ENST00000487055.1_1_5:132036305-132039285:-|nuORF	REV__ENST00000487055.1_1_5:132036305-132039285:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2752685546875	2	602.275095	1202.53564	0.38133	0.00022967	-0.29234	-0.00017607	0.088992	5.3598E-05	602.2749743509919	56.075	0.5742	56.142	55.948	56.522	0.066452					51	21	3	0	0	0	0.26684	1	12103	12103		10.824	0.75	1	1044000	+		2909	9085	2011	2024	3766	3766					-0.057529369130861596
ENWNTWFML	9	Unmodified	_ENWNTWFML_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1;REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.7764282226562	2	620.776416	1239.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.27	1	107.3	106.8	107.8	0.025711								0	0	0	0.29233	1	27480	27480		0.6015	0	1		+		2910	10155;8932	2012	2025	3767	3767					-0.07190804779770588
ENYIRLKPL	9	Unmodified	_ENYIRLKPL_					0	0	0		ENSG00000134827|ENST00000257264|TCN1	ENSG00000134827|ENST00000257264|TCN1	ENSG00000134827|ENST00000257264|TCN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3367919921875	2	573.337498	1144.66044	-0.56109	-0.00032169	-0.23532	-0.00013492	-0.79641	-0.00045661	573.337263678077	42.054	0.59851	42.054	41.856	42.454	0					47	20	3	0	0	0	0.32112	1	7981	7981		3.9444	0.66309	1	164710			2911	2693	2013	2026	3768	3768					0.09389980294099587
ENYPHFFL	8	Unmodified	_ENYPHFFL_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7536010742188	2	533.753267	1065.49198	0.49478	0.00026409	0.28351	0.00015133	0.77829	0.00041541	533.7532133725367	85.614	0.3672	85.614	85.482	85.849	0					40	17	3	0	0	0	0.4772	1	21182	21182		15.847	0	1	193260			2912	5325	2014	2027	3769	3769					-0.038145016195812786
ENYPHFFL	8	Unmodified	_ENYPHFFL_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.75341796875	2	533.753267	1065.49198	0.76232	0.00040689	-0.15765	-8.4145E-05	0.60467	0.00032274	533.753047620547	85.629	0.42801	85.654	85.471	85.899	0.025177					28	16	3	0	0	0	0.4772	1	21030	21030		15.847	0	1	183070			2913	5325	2014	2027	3770	3770					-0.038145016195812786
EPAEFWDLL	9	Unmodified	_EPAEFWDLL_					0	0	0		nc|ENSG00000135407|O75366-2|AVIL;ENST00000549851.5_1_12:58191667-58209405:-|nuORF;ENSG00000135407|ENST00000549994|AVIL	nc|ENSG00000135407|O75366-2|AVIL	nc|ENSG00000135407|O75366-2|AVIL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.829345703125	2	560.27149	1118.52843	0.49982	0.00028003	-2.0079	-0.001125	-1.5081	-0.00084494	560.2705322869342	81.959	0.25485	81.981	81.763	82.018	0.021866					13	8	2	0	0	0	0.2491	1	19876	19876		8.5933	0.68312	1	134490			2914	2726	2015	2028	3771	3771					-0.02609669513526569
EPASPEQEL	9	Unmodified	_EPASPEQEL_					0	0	0		ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2349548339844	2	500.235104	998.455655	-0.12945	-6.4757E-05	-0.062513	-3.1271E-05	-0.19197	-9.6028E-05	500.2349703886248	44.222	0.67218	44.222	43.859	44.531	0					48	22	3	0	0	0	0.020768	2	8575	8575;8630		57.722	33.701	1	183030			2915	3376	2016	2029	3772;3773	3772					-0.043634233069496986
EPASPEQEL	9	Unmodified	_EPASPEQEL_					0	0	0		ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2350158691406	2	500.235104	998.455655	0.028205	1.4109E-05	0.13461	6.7336E-05	0.16281	8.1445E-05	500.2350106702991	44.155	0.53647	44.244	44.003	44.539	0.088924					42	17	3	0	0	0	0.03918	1	8427	8427		45.7	25.246	1	136580			2916	3376	2016	2029	3774	3774					-0.043634233069496986
EPCLYVEIPGQ	11	Unmodified	_EPCLYVEIPGQ_					0	0	0			REV__nc|ENSG00000112242|O00716-2|E2F3	REV__nc|ENSG00000112242|O00716-2|E2F3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.302734375	2	624.302464	1246.59037	0.065919	4.1154E-05	1.099	0.00068611	1.1649	0.00072726	624.3031249137912	38.143	0.57898	38.143	37.96	38.539	0					32	19	3	0	0	0	0.41369	1	6722	6722		1.1933	0.66858	1	49418	+		2917	7903	2017	2030	3775	3775					-0.02305686156705633
EPDDRIVL	8	Unmodified	_EPDDRIVL_					0	0	0			REV__ENST00000575171.1_1_17:729096-882585:-|nuORF	REV__ENST00000575171.1_1_17:729096-882585:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7556457519531	2	478.756007	955.497461	-0.64534	-0.00030896	-0.071032	-3.4007E-05	-0.71637	-0.00034296	478.7558899424527	41.451	1.7233	41.541	41.089	42.812	0.089764					148	66	4	0	0	0	0.53118	2	7701	7701;7757		7.2892	1.5574	1	966490	+		2918	10127	2018	2031	3776;3777	3776					0.01793177172248761
EPDPEEWQL	9	Unmodified	_EPDPEEWQL_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.75390625	2	571.753661	1141.49277	0.49941	0.00028554	0.62678	0.00035836	1.1262	0.0006439	571.753897228118	70.249	0.83018	70.249	69.878	70.708	0					45	30	2	0	0	0	0.031665	1	16473	16473		49.933	25.912	1	334620			2919	4514	2019	2032	3778	3778					-0.07231751761173655
EPDPEEWQL	9	Unmodified	_EPDPEEWQL_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.2896728515625	2	571.753661	1141.49277	0.4361	0.00024934	0.2419	0.0001383	0.67799	0.00038764	571.7536996756955	70.102	0.89747	70.162	69.833	70.73	0.060562					62	37	3	0	0	0	0.11896	1	16298	16298		39.957	14.558	1	227930			2920	4514	2019	2032	3779	3779					-0.07231751761173655
EPDSWHWLL	9	Unmodified	_EPDSWHWLL_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.7828369140625	2	591.782556	1181.55056	0.44208	0.00026162	0.11759	6.9588E-05	0.55967	0.0003312	591.7826567741362	79.233	0.86075	79.233	78.954	79.815	0					79	29	4	0	0	0	0.045114	2	19242	19191;19242		44.407	26.034	1	681880			2921	1398	2020	2033	3780;3781	3781					-0.03295445045091583
EPDSWHWLL	9	Unmodified	_EPDSWHWLL_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.7827758789062	2	591.782556	1181.55056	0.29507	0.00017462	0.32536	0.00019254	0.62044	0.00036716	591.7826160157042	79.189	0.7782	79.216	78.932	79.71	0.026428					94	27	5	0	0	0	0.14718	2	19048	19048;19099		24.674	24.674	1	700350			2922	1398	2020	2033	3782;3783	3782					-0.03295445045091583
EPDWHYRWS	9	Unmodified	_EPDWHYRWS_					0	0	0			REV__ENST00000295461.9_1_4:48037915-48038026:+|nuORF	REV__ENST00000295461.9_1_4:48037915-48038026:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.5324401855469	3	425.856233	1274.54687	0.049231	2.0965E-05	-0.41647	-0.00017736	-0.36724	-0.00015639	425.8560226666608	31.098	0.583	31.098	30.909	31.492	0					67	27	4	0	0	0	0.34372	1	4641	4641		0.96228	0.18574	1	57652	+		2923	11324	2021	2034	3784	3784					-0.07942114818956725
EPEDHYFLL	9	Unmodified	_EPEDHYFLL_					0	0	0		ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3;ENST00000541653.2_1_14:22054224-22054383:-|nuORF	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7747192382812	2	581.774396	1161.53424	0.65443	0.00038073	-0.79812	-0.00046433	-0.14369	-8.3596E-05	581.7743155969057	67.305	1.3972	67.305	67.011	68.408	0					102	52	4	0	0	0	0.0088567	2	15602	15602;15650		70.716	38.262	1	2105600			2924	1875	2022	2035	3785;3786	3785					-0.040065710018552636
EPEDHYFLL	9	Unmodified	_EPEDHYFLL_					0	0	0		ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3;ENST00000541653.2_1_14:22054224-22054383:-|nuORF	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7747802734375	2	581.774396	1161.53424	0.92714	0.00053939	-1.0979	-0.00063874	-0.17077	-9.9351E-05	581.7741652277791	67.302	1.654	67.367	67.042	68.696	0.065063					133	59	4	0	0	0	0.026569	3	15442	15393;15442;15487		53.576	26.692	1	2469000			2925	1875	2022	2035	3787;3788;3789	3788					-0.040065710018552636
EPEDIVAEI	9	Unmodified	_EPEDIVAEI_					0	0	0		tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2970275878906	2	507.75313	1013.49171	0.44008	0.00022345	-0.79578	-0.00040406	-0.3557	-0.00018061	507.75273191805155	60.241	0.55229	60.241	60.091	60.643	0					51	19	4	0	0	0	0.23975	1	13452	13452		14.838	0	1	88222			2926	13568	2023	2036	3790	3790					-0.014499661301101696
EPEEESERHIL	11	Unmodified	_EPEEESERHIL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.5528259277344	3	456.552768	1366.63647	0.037728	1.7225E-05	-0.36711	-0.0001676	-0.32938	-0.00015038	456.55271585015225	33.063	2.0826	33.063	32.801	34.884	0					178	80	5	0	0	0	0.27201	7	5209	5167;5209;5253;5299;5341;5394;5444		21.241	7.0707	1	751550			2927	13348	2024	2037	3791;3792;3793;3794;3795;3796;3797	3792					-0.03217949720897195
EPEEESERHIL	11	Unmodified	_EPEEESERHIL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.5527648925781	3	456.552768	1366.63647	-0.11919	-5.4416E-05	-0.19956	-9.1112E-05	-0.31875	-0.00014553	456.55277147161206	33.026	1.33	33.1	32.862	34.192	0.074322					146	54	5	0	0	0	0.33915	6	5077	5034;5077;5122;5163;5208;5300		13.535	8.3365	1	710170			2928	13348	2024	2037	3798;3799;3800;3801;3802;3803	3799					-0.03217949720897195
EPEEQQYSIFS	11	Unmodified	_EPEEQQYSIFS_					0	0	0			REV__ENST00000590459.1_1_19:46027056-46027140:+|nuORF	REV__ENST00000590459.1_1_19:46027056-46027140:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8807678222656	3	452.869985	1355.58813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.246	1	86.246	85.746	86.746	0								0	0	0	0.33867	1	21364	21364		1.2148	0.10508	1		+		2929	12575	2025	2038	3804	3804					-0.07544443360825426
EPEGRPRPL	9	Unmodified	_EPEGRPRPL_					0	0	0		ENST00000258149.9_1_12:69201984-69202068:+|nuORF	ENST00000258149.9_1_12:69201984-69202068:+|nuORF	ENST00000258149.9_1_12:69201984-69202068:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7894287109375	2	525.788173	1049.56179	-0.12889	-6.7768E-05	0.43405	0.00022822	0.30516	0.00016045	525.7884676536929	24.029	0.33431	24.129	24.014	24.348	0.099739					53	31	2	0	0	0	0.32375	1	2447	2447		3.5965	1.019	1	19555			2930	5854	2026	2039	3805	3805					0.038993770490378665
EPEGRPRPL	9	Unmodified	_EPEGRPRPL_					0	0	0		ENST00000258149.9_1_12:69201984-69202068:+|nuORF	ENST00000258149.9_1_12:69201984-69202068:+|nuORF	ENST00000258149.9_1_12:69201984-69202068:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	525.788173	1049.56179	-0.25587	-0.00013453	-0.057302	-3.0129E-05	-0.31317	-0.00016466	525.7881428591209	24.267	0.33851	24.267	24.121	24.46	0	0.069042	-0.0001733	NaN	3.5965	47	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25079			2931	5854	2026	2039							0.038993770490378665
EPENRGGF	8	Unmodified	_EPENRGGF_					0	0	0		ENSG00000138942|ENST00000326132|RNF185	ENSG00000138942|ENST00000326132|RNF185	ENSG00000138942|ENST00000326132|RNF185	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.210205078125	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.678	1	85.703	85.203	86.203	0.025169								0	0	0	0.38822	1	21033	21033		5.7604	0	1				2932	2945	2027	2040	3806	3806					-0.05213122210182064
EPEPGEPLL	9	Unmodified	_EPEPGEPLL_					0	0	0		ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.75042724609375	2	490.75039	979.486227	0.27787	0.00013636	0.33822	0.00016598	0.61609	0.00030234	490.75048434943784	61.706	0.72506	61.706	61.616	62.341	0					46	31	2	0	0	0	0.092418	3	13911	13864;13911;13955		34.102	5.6156	1	567790			2933	2571	2028	2041	3807;3808;3809	3808					-0.004336449219067617
EPEPGEPLL	9	Unmodified	_EPEPGEPLL_					0	0	0		ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7507019042969	2	490.75039	979.486227	0.25568	0.00012547	0.42115	0.00020668	0.67683	0.00033216	490.7505075463567	61.618	0.68253	61.692	61.553	62.236	0.073421					55	33	2	0	0	0	0.092418	4	13732	13684;13732;13771;13783		34.102	5.6156	1	336640			2934	2571	2028	2041	3810;3811;3812;3813	3811					-0.004336449219067617
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(68)	0	0	1		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2662963867188	2	547.26535	1092.51615	0.43714	0.00023923	1.6267	0.00089024	2.0639	0.0011295	547.2659711541444	60.893	0.77816	60.893	60.669	61.447	0					79	27	4	0	0	0	0.0097093	1	13631	13631		68.081	25.986	1	860080			2935	2985	2029	2042	3814	3814		193			-0.026410292482069053
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(61)	0	0	1		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2664794921875	2	547.26535	1092.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.786	1	63.786	63.286	64.286	0								0	0	0	0.022836	1	14514	14514		61.357	19.263	1				2936	2985	2029	2042	3815	3815		193			-0.026410292482069053
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(61)	0	0	1		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.26611328125	2	547.26535	1092.51615	0.28508	0.00015601	2.0404	0.0011167	2.3255	0.0012727	547.2659830360957	60.832	0.83542	60.906	60.578	61.414	0.073421					68	28	3	0	0	0	0.015682	3	13492	13446;13492;13545		61.357	19.263	1	870410			2937	2985	2029	2042	3816;3817;3818	3817		193			-0.026410292482069053
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(61)	0	0	1		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2662963867188	2	547.26535	1092.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.653	1	63.724	63.224	64.224	0.071018								0	0	0	0.022836	1	14332	14332		61.357	19.263	1				2938	2985	2029	2042	3819	3819		193			-0.026410292482069053
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(52)	0	0	1		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2666625976562	2	547.26535	1092.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.865	1	63.936	63.436	64.436	0.071018								0	0	0	0.039919	1	14395	14395		52.268	10.174	1				2939	2985	2029	2042	3820	3820		193			-0.026410292482069053
EPERFLHQ	8	Unmodified	_EPERFLHQ_					0	0	0			REV__nc|ENSG00000118705|P04844-2|RPN2	REV__nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7689208984375	2	528.267073	1054.51959	0.33241	0.0001756	-1.2801	-0.00067621	-0.94764	-0.00050061	528.2663047822216	38.233	0.43806	38.233	38.05	38.488	0					23	14	2	0	0	0	0.53894	1	6783	6783		2.0598	0.21551	1	37699	+		2940	8845	2030	2043	3821	3821					-0.005485983593416677
EPFCPKYQRRL	11	Unmodified	_EPFCPKYQRRL_					0	0	0			REV__ENSG00000232030|ENST00000416929|MAGEB6B	REV__ENSG00000232030|ENST00000416929|MAGEB6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.27154541015625	3	479.587089	1435.73944	0.11305	5.4217E-05	3.684	0.0017668	3.7971	0.001821	479.58882885442335	74.536	0.15138	74.536	74.452	74.604	0					7	5	2	0	0	0	0.311	1	17780	17780		0.50596	0.09769	1	63337	+		2941	11042	2031	2044	3822	3822					0.03899884256702535
EPFEREIINN	10	Unmodified	_EPFEREIINN_					0	0	0		tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.21368408203125	3	420.878815	1259.61462	0.36031	0.00015165	2.5326	0.0010659	2.8929	0.0012176	420.87959193754295	48.841	0.65751	48.841	48.656	49.314	0					56	22	4	0	0	0	0.44469	1	9966	9966		5.7834	0.38072	1	155930			2942	13629	2032	2045	3823	3823					-0.004807096787772025
EPFKFLEPTL	10	Unmodified	_EPFKFLEPTL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.8314819335938	2	610.831714	1219.64888	0.22969	0.0001403	-0.82155	-0.00050183	-0.59186	-0.00036152	610.8309957191487	74.216	0.39551	74.216	74.03	74.426	0					35	14	3	0	0	0	0.11267	1	17688	17688		43.772	5.7984	1	500440			2943	1926	2033	2046	3824	3824					0.04783738480091415
EPFKFLEPTL	10	Unmodified	_EPFKFLEPTL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.8314819335938	2	610.831714	1219.64888	0.46253	0.00028253	-1.1821	-0.00072208	-0.7196	-0.00043955	610.8306663949224	74.162	0.49873	74.211	74.042	74.541	0.048546					34	17	3	0	0	0	0.20801	1	17512	17512		32.786	13.529	1	448510			2944	1926	2033	2046	3825	3825					0.04783738480091415
EPFLDFSTF	9	Unmodified	_EPFLDFSTF_					0	0	0			REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X	REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.27734375	2	551.758215	1101.50188	0.57974	0.00031987	-1.5294	-0.00084388	-0.9497	-0.000524	551.7575116710303	88.22	0.48043	88.22	88.032	88.512	0					23	17	2	0	0	0	0.23598	1	21990	21990		15.847	3.3156	1	109430	+		2945	8935	2034	2047	3826	3826					-0.04481358404859748
EPFLQFRR	8	Unmodified	_EPFLQFRR_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.800537109375	2	546.801083	1091.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.168	1	25.264	24.764	25.764	0.096073								0	0	0	0.38822	1	2768	2768		0.69038	0	1				2946	2337;7495	2035	2048	3827	3827					0.04548271291309902
EPFSSPPEL	9	Unmodified	_EPFSSPPEL_					0	0	0		ENST00000447693.1_1_13:25939939-25940071:-|nuORF;ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENST00000447693.1_1_13:25939939-25940071:-|nuORF	ENST00000447693.1_1_13:25939939-25940071:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.7626953125	2	501.742565	1001.47058	0.49089	0.0002463	-0.066729	-3.3481E-05	0.42416	0.00021282	501.7425009292212	70.721	0.96199	70.721	70.219	71.181	0					57	34	2	0	0	0	0.25174	1	16477	16477		7.2892	1.5288	1	163410			2947	1368	2036	2049	3828	3828					-0.030099314389417486
EPFVALGHH	9	Unmodified	_EPFVALGHH_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000007350	REV__CON__ENSEMBL:ENSBTAP00000007350	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7588195800781	2	503.758884	1005.50321	-0.027127	-1.3666E-05	-0.62228	-0.00031348	-0.64941	-0.00032715	503.75855664860825	44.471	0.68436	44.558	44.304	44.988	0.087543					46	24	3	0	0	0	0.14718	1	8499	8499		24.674	1.5255	1	163440	+	+	2948	7830	2037	2050	3829	3829					0.0006832047456555301
EPGAAVPSLF	10	Unmodified	_EPGAAVPSLF_					0	0	0		ENST00000430010.1_1_2:55451599-55452256:+|nuORF	ENST00000430010.1_1_2:55451599-55452256:+|nuORF	ENST00000430010.1_1_2:55451599-55452256:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2607421875	2	494.260925	986.507297	0.40889	0.0002021	0.46463	0.00022965	0.87352	0.00043175	494.2605973981141	48.148	0.48865	48.148	47.911	48.399	0					30	16	3	0	0	0	0.38104	1	9757	9757		13.906	0.39817	1	77573			2949	6483	2038	2051	3830	3830					0.013503651776204606
EPGNQVLKRLF	11	Unmodified	_EPGNQVLKRLF_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.2511291503906	3	434.250583	1299.72992	0.44975	0.0001953	0.79653	0.00034589	1.2463	0.0005412	434.2508744812427	59.733	0.75836	59.733	59.36	60.119	0					41	29	2	0	0	0	0.40316	1	13374	13374		3.5927	1.3399	1	275390	+		2950	9593	2039	2052	3831	3831					0.09204439242853368
EPGPPPELPG	10	Unmodified	_EPGPPPELPG_					0	0	0		ENST00000599939.1_1_19:7992074-7992344:-|nuORF	ENST00000599939.1_1_19:7992074-7992344:-|nuORF	ENST00000599939.1_1_19:7992074-7992344:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.25238037109375	2	495.250557	988.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.692	1	47.772	47.272	48.272	0.080029								0	0	0	0.32828	1	9483	9483		13.906	2.2658	1				2951	7294	2040	2053	3832	3832					-0.008142252020320484
EPGQGLTQR	9	Unmodified	_EPGQGLTQR_					0	0	0			REV__nc|ENSG00000278030|P04435|TRBV7-9	REV__nc|ENSG00000278030|P04435|TRBV7-9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2573547363281	2	493.256705	984.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.414	1	27.501	27.001	28.001	0.0867								0	0	0	0.05392	1	3410	3410		47.594	13.193	1		+		2952	12915	2041	2054	3833	3833					0.005988112610111784
EPGVDTKLK	9	Unmodified	_EPGVDTKLK_					0	0	0		nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.263671875	2	493.779482	985.544411	0.1284	6.3401E-05	-0.24835	-0.00012263	-0.11995	-5.9228E-05	493.77926981209055	34.236	0.54201	34.313	34.118	34.66	0.076244					35	21	2	0	0	0	0.25579	1	5442	5442		4.3292	0.38484	1	69646			2953	1707	2042	2055	3834	3834					0.051060367233731085
EPHHVIQDEL	10	Unmodified	_EPHHVIQDEL_					0	0	0			REV__nc|ENSG00000170222|Q3LIE5-3|ADPRM	REV__nc|ENSG00000170222|Q3LIE5-3|ADPRM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5661926269531	3	406.20341	1215.5884	0.0026677	1.0836E-06	-2.0031	-0.00081366	-2.0004	-0.00081258	406.20249228414633	58.465	0.90875	58.535	58.184	59.093	0.070477					65	32	4	0	0	0	0.31833	1	12874	12874		2.086	0	1	192690	+		2954	10204	2043	2056	3835	3835					-0.010769788503012023
EPHMLGWR	8	Unmodified	_EPHMLGWR_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2415161132812	2	513.252911	1024.49127	-0.12441	-6.3854E-05	0.17616	9.0416E-05	0.051751	2.6562E-05	513.2528690228219	27.529	0.47477	27.529	27.344	27.818	0					73	38	2	0	0	0	0.53494	1	3618	3618		4.756	0	1	313210			2955	2056	2044	2057	3836	3836					-0.01999619540265485
EPHNQRQLF	9	Unmodified	_EPHNQRQLF_					0	0	0			REV__CREBBP|p.R1347Q|1|0.27|ENSG00000005339|chr16:3740492-3740492|C/T|missense_variant	REV__CREBBP|p.R1347Q|1|0.27|ENSG00000005339|chr16:3740492-3740492|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8133544921875	2	584.796529	1167.5785	0.6444	0.00037685	1.8375	0.0010745	2.4819	0.0014514	584.7975184040096	82.635	0.62561	82.657	82.475	83.1	0.021751					46	21	3	0	0	0	0.29576	1	20179	20179		7.2892	1.0834	1	343350	+		2956	7859	2045	2058	3837	3837					0.0014187793499331747
EPHPGERAA	9	Unmodified	_EPHPGERAA_					0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF;nc|ENSG00000147813|Q6XQN6-3|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2354431152344	2	482.235773	962.456993	-0.65227	-0.00031455	-0.1266	-6.1052E-05	-0.77887	-0.0003756	482.2356036164669	16.323	0.18915	16.323	16.24	16.429	0					36	24	2	0	0	0	0.30757	1	707	707		5.7319	5.7319	1	18467			2957	3343	2046	2059	3838	3838					-0.02573744427525071
EPHPGERAA	9	Unmodified	_EPHPGERAA_					0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF;nc|ENSG00000147813|Q6XQN6-3|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2354431152344	2	482.235773	962.456993	-0.048331	-2.3307E-05	-0.38399	-0.00018517	-0.43232	-0.00020848	482.23547159260835	16.327	0.23087	16.405	16.313	16.544	0.077806					46	29	2	0	0	0	0.32831	1	645	645		2.9952	0.10602	1	23948			2958	3343	2046	2059	3839	3839					-0.02573744427525071
EPHRQFNLL	9	Unmodified	_EPHRQFNLL_					0	0	0			REV__ENSG00000128849|ENST00000281282|CGNL1	REV__ENSG00000128849|ENST00000281282|CGNL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3117065429688	2	577.309272	1152.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.197	1	76.197	75.697	76.697	0								0	0	0	0.22786	1	18302	18302		13.906	3.0821	1		+		2959	9024	2047	2060	3840	3840					0.03379352457409368
EPIENNMIC	9	Unmodified	_EPIENNMIC_					0	0	0			REV__ENST00000503613.5_1_5:147774339-147777203:+|nuORF	REV__ENST00000503613.5_1_5:147774339-147777203:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.73291015625	2	531.73336	1061.45217	0.21283	0.00011317	-1.2691	-0.00067485	-1.0563	-0.00056168	531.7326623979098	50.641	0.49716	50.641	50.46	50.957	0					44	16	4	0	0	0	0.32112	1	10504	10504		3.9444	3.9444	1	275020	+		2960	9528	2048	2061	3841	3841					-0.07610132676791181
EPIENNMIC	9	Unmodified	_EPIENNMIC_					0	0	0			REV__ENST00000503613.5_1_5:147774339-147777203:+|nuORF	REV__ENST00000503613.5_1_5:147774339-147777203:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	531.73336	1061.45217	0.21283	0.00011317	-1.2691	-0.00067485	-1.0563	-0.00056168	531.7326623979098	50.641	0.49716	50.641	50.46	50.957	0	0.0023738	1.3844E-05	NaN	3.9444	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275020	+		2961	9528	2048	2061							-0.07610132676791181
EPIFEDVMM	9	2 Oxidation (M)	_EPIFEDVM(Oxidation (M))M(Oxidation (M))_		EPIFEDVM(1)M(1)		EPIFEDVM(48)M(48)	0	0	2		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.739501953125	2	571.74085	1141.46715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.344	1	61.344	60.844	61.844	0								0	0	0	0.05151	1	13766	13766		48.346	26.809	1				2962	7645	2049	2062	3842	3842		336;337			-0.09792685599472861
EPIFEDVMM	9	2 Oxidation (M)	_EPIFEDVM(Oxidation (M))M(Oxidation (M))_		EPIFEDVM(1)M(1)		EPIFEDVM(48)M(48)	0	0	2		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7418823242188	2	571.74085	1141.46715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.221	1	61.294	60.794	61.794	0.073421								0	0	0	0.05151	1	13591	13591		48.346	30.199	1				2963	7645	2049	2062	3843	3843		336;337			-0.09792685599472861
EPIKEATAL	9	Unmodified	_EPIKEATAL_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000487284.2_1_7:101917466-101926379:+|nuORF	nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2741394042969	2	486.274032	970.533512	-0.16555	-8.0505E-05	0.35882	0.00017448	0.19326	9.3978E-05	486.2741320821683	39.431	0.5698	39.431	39.237	39.806	0					41	20	3	0	0	0	0.27332	1	7144	7144		10.074	3.3508	1	239140			2964	7142	2050	2063	3844	3844					0.0470663434908829
EPIKEATAL	9	Unmodified	_EPIKEATAL_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000487284.2_1_7:101917466-101926379:+|nuORF	nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.27398681640625	2	486.274032	970.533512	-0.054439	-2.6472E-05	0.26365	0.00012821	0.20921	0.00010173	486.27406252476607	39.335	0.56744	39.424	39.22	39.788	0.088562					50	22	3	0	0	0	0.24791	1	6999	6999		10.074	3.3508	1	196440			2965	7142	2050	2063	3845	3845					0.0470663434908829
EPIPYEFMA	9	Oxidation (M)	_EPIPYEFM(Oxidation (M))A_		EPIPYEFM(1)A		EPIPYEFM(64)A	0	0	1		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7521362304688	2	556.752075	1111.4896	0.53315	0.00029683	-0.13713	-7.635E-05	0.39602	0.00022048	556.751904335088	68.107	0.67324	68.107	67.914	68.587	0					54	23	3	0	0	0	0.011655	2	15864	15815;15864		64.236	46.09	1	319790			2966	2171	2051	2064	3846;3847	3847		133			-0.061687181395427615
EPIPYEFMA	9	Oxidation (M)	_EPIPYEFM(Oxidation (M))A_		EPIPYEFM(1)A		EPIPYEFM(64)A	0	0	1		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7523193359375	2	556.752075	1111.4896	0.6707	0.00037342	-0.063121	-3.5143E-05	0.60758	0.00033827	556.7519871655286	69.682	0.79549	69.682	69.347	70.142	0					49	27	2	0	0	0	0.011655	2	16324	16274;16324		64.236	56.081	1	274570			2967	2171	2051	2064	3848;3849	3849		133			-0.061687181395427615
EPIPYEFMA	9	Oxidation (M)	_EPIPYEFM(Oxidation (M))A_		EPIPYEFM(1)A		EPIPYEFM(48)A	0	0	1		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2537231445312	2	556.752075	1111.4896	0.72444	0.00040333	-0.26893	-0.00014973	0.45551	0.00025361	556.7517629167615	68.088	0.6791	68.152	67.961	68.64	0.063499					43	25	3	0	0	0	0.033885	1	15648	15648		48.346	35.303	1	330200			2968	2171	2051	2064	3850	3850		133			-0.061687181395427615
EPIPYEFMA	9	Oxidation (M)	_EPIPYEFM(Oxidation (M))A_		EPIPYEFM(1)A		EPIPYEFM(48)A	0	0	1		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.75244140625	2	556.752075	1111.4896	0.55035	0.00030641	-0.1922	-0.00010701	0.35815	0.0001994	556.751744024241	69.6	0.82167	69.662	69.308	70.13	0.062126					62	31	3	0	0	0	0.082308	1	16128	16128		48.346	34.44	1	278560			2969	2171	2051	2064	3851	3851		133			-0.061687181395427615
EPISVEVQL	9	Unmodified	_EPISVEVQL_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2793273925781	2	507.279315	1012.54408	0.40041	0.00020312	-0.12852	-6.5197E-05	0.27189	0.00013792	507.27914634670236	70.806	0.96495	70.806	70.675	71.64	0					73	33	4	0	0	0	0.0046402	4	16682	16637;16682;16731;16785		85.642	30.868	1	637430			2970	2915	2052	2065	3852;3853;3854;3855	3853					0.03830617003529824
EPISVEVQL	9	Unmodified	_EPISVEVQL_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2792053222656	2	507.279315	1012.54408	0.48771	0.00024741	-0.32206	-0.00016338	0.16565	8.4031E-05	507.2790708584896	70.315	1.6323	70.376	69.996	71.628	0.060562					152	64	3	0	0	0	0.020768	2	16504	16455;16504		57.722	17.765	1	1077900			2971	2915	2052	2065	3856;3857	3857					0.03830617003529824
EPISVEVQL	9	Unmodified	_EPISVEVQL_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	507.279315	1012.54408	0.46669	0.00023674	-0.094317	-4.7845E-05	0.37237	0.0001889	507.27913066596574	70.408	0.65652	70.408	70.018	70.675	0	0.016232	0.00015036	NaN	57.722	76	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	930540			2972	2915	2052	2065							0.03830617003529824
EPITVEVAF	9	Unmodified	_EPITVEVAF_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENST00000578252.1_1_18:29450325-29450937:-|nuORF	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.767822265625	2	502.768583	1003.52261	0.31158	0.00015665	-1.373	-0.00069028	-1.0614	-0.00053363	502.7681340396786	76.307	0.24097	76.307	76.253	76.494	0					11	8	2	0	0	0	0.05573	1	18346	18346		42.095	11.87	1	221040			2973	3525	2053	2066	3858	3858					0.020992319748074806
EPITVEVAF	9	Unmodified	_EPITVEVAF_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENST00000578252.1_1_18:29450325-29450937:-|nuORF	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.7685546875	2	502.768583	1003.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.294	1	76.333	75.833	76.833	0.03923								0	0	0	0.071558	1	18174	18174		42.095	11.87	1				2974	3525	2053	2066	3859	3859					0.020992319748074806
EPIWNEVGL	9	Unmodified	_EPIWNEVGL_					0	0	0		TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant;nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7713623046875	2	528.771657	1055.52876	0.80484	0.00042558	-1.2114	-0.00064058	-0.4066	-0.000215	528.770896074116	81.407	0.543	81.407	81.173	81.716	0					37	18	3	0	0	0	0.064247	1	19874	19874		40.239	13.356	1	242290			2975	4161	2054	2067	3860	3860					0.003217502063534994
EPKHSAKY	8	Unmodified	_EPKHSAKY_					0	0	0			REV__ENSG00000219435|ENST00000328404|CATSPERZ	REV__ENSG00000219435|ENST00000328404|CATSPERZ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.74932861328125	2	480.250892	958.48723	-0.20912	-0.00010043	0.27804	0.00013353	0.068925	3.3101E-05	480.2510288220672	45.698	0.47818	45.784	45.475	45.954	0.085617					31	18	2	0	0	0	0.3576	1	8865	8865		4.756	0.81161	1	103770	+		2976	11020	2055	2068	3861	3861					0.006326142376565258
EPKSQKPFRKM	11	Unmodified	_EPKSQKPFRKM_					0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ;KIZ|p.S376Rfs*12|1|0.15|ENSG00000088970|chr20:21162934-21162935|-/AATTACTCATCAGT|frameshift_variant	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.25567626953125	3	459.25534	1374.74419	0.5834	0.00026793	-0.45787	-0.00021028	0.12552	5.7647E-05	459.2549340635152	70.901	0.73811	70.901	70.531	71.269	0					40	25	3	0	0	0	0.40087	1	16699	16699		4.1166	0.52395	1	192750			2977	1019	2056	2069	3862	3862					0.07180768399462067
EPLAESITDVL	11	Unmodified	_EPLAESITDVL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.8140258789062	2	593.813719	1185.61288	0.43546	0.00025858	0.090479	5.3728E-05	0.52594	0.00031231	593.8136923804177	83.212	0.90932	83.212	82.9	83.809	0					87	30	5	0	0	0	0.0091431	3	20457	20416;20457;20504		129.77	84.073	1	3382600			2978	3154	2057	2070	3863;3864;3865	3864					0.02750236512565607
EPLAESITDVL	11	Unmodified	_EPLAESITDVL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.8140869140625	2	593.813719	1185.61288	0.2284	0.00013563	0.30769	0.00018271	0.53609	0.00031834	593.8137971643525	83.164	1.0706	83.185	82.877	83.948	0.021744					110	37	6	0	0	0	0.012977	3	20290	20248;20290;20332		125.53	87.354	1	2778400			2979	3154	2057	2070	3866;3867;3868	3867					0.02750236512565607
EPLCQADGWLK	11	Unmodified	_EPLCQADGWLK_					0	0	0			REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF	REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3074951171875	2	630.308081	1258.60161	0.4989	0.00031446	-1.5671	-0.00098774	-1.0682	-0.00067328	630.3069838718546	100	0.14742	100.05	99.956	100.1	0.042839					10	6	2	0	0	0	0.40055	1	25390	25390		4.1895	0.90819	1	56178	+		2980	12069	2058	2071	3869	3869					-0.017348640625641565
EPLKPEER	8	Unmodified	_EPLKPEER_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2895202636719	2	499.269281	996.52401	0.10372	5.1786E-05	0.61748	0.00030829	0.72121	0.00036008	499.269450219423	45.741	0.95647	45.827	45.525	46.481	0.085621					111	35	4	0	0	0	0.40691	1	8929	8929		25.399	0	1	1854100			2981	3730	2059	2072	3870	3870					0.025608660635725755
EPLKRSVVYI	10	Unmodified	_EPLKRSVVYI_					0	0	0		nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1	nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-2|NCEH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.359130859375	2	602.358431	1202.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.391	1	98.433	97.933	98.933	0.041931								0	0	0	0.33877	1	24904	24904		1.6526	0.17072	1				2982	3234	2060	2073	3871	3871					0.10906535982644527
EPMDDGKEFA	10	Unmodified	_EPMDDGKEFA_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2818603515625	2	569.739696	1137.46484	-0.14681	-8.3642E-05	2.8258	0.00161	2.679	0.0015263	569.7412107748938	32.638	0.35154	32.638	32.505	32.856	0					20	17	2	0	0	0	0.31838	1	5070	5070		1.4819	0.68827	1	18804	+		2983	9517	2061	2074	3872	3872					-0.09839398012923084
EPNEVFPY	8	Unmodified	_EPNEVFPY_					0	0	0		ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7295227050781	2	497.729458	993.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.306	1	25.402	24.902	25.902	0.096073								0	0	0	0.38822	1	2807	2807		0.79363	0	1				2984	3270	2062	2075	3873	3873					-0.05262200610422951
EPNKYLCNFI	10	Unmodified	_EPNKYLCNFI_					0	0	0			REV__ENSG00000152463|ENST00000378228|OLAH	REV__ENSG00000152463|ENST00000378228|OLAH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.8042602539062	2	620.805174	1239.59579	0.031674	1.9663E-05	-1.265	-0.00078532	-1.2333	-0.00076565	620.8035144959741	70.946	2.0099	70.946	70.708	72.718	0					210	70	6	0	0	0	0.20801	2	16807	16807;16926		32.786	5.1569	1	3255700	+		2985	9673	2063	2076	3874;3875	3874					-0.014419625742448261
EPNKYLCNFI	10	Unmodified	_EPNKYLCNFI_					0	0	0			REV__ENSG00000152463|ENST00000378228|OLAH	REV__ENSG00000152463|ENST00000378228|OLAH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.803466796875	2	620.805174	1239.59579	0.27034	0.00016783	-1.4471	-0.00089837	-1.1768	-0.00073055	620.8035467413129	70.848	2.06	70.906	70.689	72.749	0.058578					197	74	5	0	0	0	0.20801	1	16623	16623		32.786	0	1	2577700	+		2986	9673	2063	2076	3876	3876					-0.014419625742448261
EPNPDDPLM	9	Oxidation (M)	_EPNPDDPLM(Oxidation (M))_		EPNPDDPLM(1)		EPNPDDPLM(76)	0	0	1		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2210083007812	2	522.221139	1042.42773	0.28995	0.00015142	-0.096609	-5.0451E-05	0.19334	0.00010097	522.2209499348356	48.07	1.0465	48.07	47.583	48.63	0					91	35	3	0	0	0	0.0072241	2	9763	9695;9763		75.761	75.761	1	493990			2987	854	2064	2077	3877;3878	3878		49			-0.09179069558695119
EPNPDDPLM	9	Oxidation (M)	_EPNPDDPLM(Oxidation (M))_		EPNPDDPLM(1)		EPNPDDPLM(83)	0	0	1		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2210693359375	2	522.221139	1042.42773	0.18644	9.7365E-05	-0.13785	-7.199E-05	0.048591	2.5375E-05	522.2209807916897	49.232	1.601	49.232	48.605	50.206	0					140	56	4	0	0	0	0.0050339	3	10083	10034;10083;10137		82.529	82.529	1	487070			2988	854	2064	2077	3879;3880;3881	3880		49			-0.09179069558695119
EPNPDDPLM	9	Oxidation (M)	_EPNPDDPLM(Oxidation (M))_		EPNPDDPLM(1)		EPNPDDPLM(56)	0	0	1		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2212524414062	2	522.221139	1042.42773	0.3994	0.00020858	-0.11693	-6.1065E-05	0.28247	0.00014751	522.2209837012748	48.033	1.0532	48.113	47.612	48.665	0.080029					93	37	3	0	0	0	0.02293	2	9536	9536;9615		56.177	56.177	1	453760			2989	854	2064	2077	3882;3883	3882		49			-0.09179069558695119
EPNPDDPLM	9	Oxidation (M)	_EPNPDDPLM(Oxidation (M))_		EPNPDDPLM(1)		EPNPDDPLM(60)	0	0	1		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2210693359375	2	522.221139	1042.42773	0.053306	2.7838E-05	0.098395	5.1384E-05	0.1517	7.9221E-05	522.2210933500579	49.135	1.4954	49.211	48.633	50.129	0.076607					117	53	3	0	0	0	0.017478	2	9947	9899;9947		60.074	39.62	1	360440			2990	854	2064	2077	3884;3885	3885		49			-0.09179069558695119
EPNPESLEL	9	Unmodified	_EPNPESLEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2509155273438	2	514.250754	1026.48696	0.44167	0.00022713	0.10735	5.5206E-05	0.54902	0.00028234	514.2506769746861	62.48	0.88396	62.48	62.285	63.169	0					64	33	3	0	0	0	0.010235	2	14143	14096;14143		66.457	7.7779	1	687870			2991	1213	2065	2078	3886;3887	3887					-0.025228502728623425
EPNPESLEL	9	Unmodified	_EPNPESLEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2509765625	2	514.250754	1026.48696	0.38548	0.00019823	0.16049	8.2532E-05	0.54596	0.00028076	514.2507719136529	62.497	0.6494	62.57	62.284	62.934	0.072701					49	22	3	0	0	0	0.01961	1	13997	13997		72.968	7.7329	1	658250			2992	1213	2065	2078	3888	3888					-0.025228502728623425
EPNPYKVTPF	10	Unmodified	_EPNPYKVTPF_					0	0	0			REV__nc|ENSG00000169299|Q96G03-2|PGM2	REV__nc|ENSG00000169299|Q96G03-2|PGM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.3075561523438	2	596.305864	1190.59717	0.13363	7.9684E-05	2.8747	0.0017142	3.0084	0.0017939	596.3078437373593	73.995	1.1978	73.995	73.598	74.796	0					78	43	3	0	0	0	0.43214	1	17650	17650		8.1555	0.24537	1	728840	+		2993	10168	2066	2079	3889	3889					0.009499947861968394
EPPFPDLYGF	10	Unmodified	_EPPFPDLYGF_					0	0	0			REV__nc|ENSG00000018236|Q12860-3|CNTN1	REV__nc|ENSG00000018236|Q12860-3|CNTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.27978515625	2	591.279315	1180.54408	0.4528	0.00026773	-0.082527	-4.8796E-05	0.37027	0.00021893	591.2792232922158	67.783	1.074	67.783	67.368	68.442	0					98	39	3	0	0	0	0.33099	1	15743	15743		19.257	2.1441	1	605410	+		2994	7993	2067	2080	3890	3890					-0.03897382996501619
EPPFPDLYGF	10	Unmodified	_EPPFPDLYGF_					0	0	0			REV__nc|ENSG00000018236|Q12860-3|CNTN1	REV__nc|ENSG00000018236|Q12860-3|CNTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.279296875	2	591.279315	1180.54408	0.67976	0.00040193	-0.35708	-0.00021113	0.32268	0.00019079	591.2789845713949	67.723	0.88214	67.786	67.526	68.408	0.063507					75	31	3	0	0	0	0.22666	1	15553	15553		30.637	1.555	1	600780	+		2995	7993	2067	2080	3891	3891					-0.03897382996501619
EPPGKNPHTAT	11	Unmodified	_EPPGKNPHTAT_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7906494140625	2	574.78837	1147.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.96	1	103	102.5	103.5	0.040916								0	0	0	0.33503	1	26282	26282		2.4985	0.43874	1				2996	4491	2068	2081	3892	3892					-0.005692480217703633
EPPLFSAL	8	Unmodified	_EPPLFSAL_					0	0	0			REV__ENST00000544745.1_1_12:125432350-125432545:-|nuORF	REV__ENST00000544745.1_1_12:125432350-125432545:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.23944091796875	2	437.239461	872.46437	0.31817	0.00013912	-0.31622	-0.00013826	0.0019493	8.5229E-07	437.2392463846591	77.924	1.2743	77.959	77.489	78.763	0.034485					100	43	3	0	0	0	0.46036	1	18842	18842		18.135	0	1	681490	+		2997	12410	2069	2082	3893	3893					0.02303595120179125
EPPPEFEF	8	Unmodified	_EPPPEFEF_					0	0	0		SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2243347167969	2	496.224008	990.433463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.744	1	70.744	70.244	71.244	0								0	0	0	0.3858	1	16632	16632		18.135	4.6271	1				2998	1147	2070	2083	3894	3894					-0.06213602984712452
EPPPEFEF	8	Unmodified	_EPPPEFEF_					0	0	0		SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2242736816406	2	496.224008	990.433463	0.68723	0.00034102	-0.49884	-0.00024753	0.18839	9.3484E-05	496.2237403728527	70.641	0.86526	70.702	70.425	71.29	0.060562					47	33	2	0	0	0	0.49441	1	16448	16448		13.508	4.1604	1	87096			2999	1147	2070	2083	3895	3895					-0.06213602984712452
EPQGPLEAR	9	Unmodified	_EPQGPLEAR_					0	0	0			REV__nc|ENSG00000124782|Q92766-5|RREB1	REV__nc|ENSG00000124782|Q92766-5|RREB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.75909423828125	2	498.759081	995.503609	0.013525	6.7457E-06	0.10214	5.0941E-05	0.11566	5.7687E-05	498.7591048697127	32.915	1.1101	32.99	32.734	33.845	0.074322					124	46	4	0	0	0	0.065576	1	5017	5017		39.95	3.8227	1	871220	+		3000	8962	2071	2084	3896	3896					0.005676954037539872
EPQKEINSL	9	Unmodified	_EPQKEINSL_					0	0	0		ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	ENSG00000091409|ENST00000684293|ITGA6	ENSG00000091409|ENST00000684293|ITGA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2798461914062	2	529.279846	1056.54514	0.040266	2.1312E-05	-0.096875	-5.1274E-05	-0.056609	-2.9962E-05	529.2797180985792	34.483	1.0052	34.483	34.254	35.259	0					95	38	4	0	0	0	0.03918	4	5653	5586;5603;5653;5701		45.7	18.816	1	649520			3001	161	2072	2085	3897;3898;3899;3900	3899					0.019128313724195323
EPQKEINSL	9	Unmodified	_EPQKEINSL_					0	0	0		ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	ENSG00000091409|ENST00000684293|ITGA6	ENSG00000091409|ENST00000684293|ITGA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2798461914062	2	529.279846	1056.54514	0.094336	4.993E-05	-0.13842	-7.3264E-05	-0.044085	-2.3333E-05	529.2797307370478	34.417	0.80597	34.493	34.249	35.055	0.076244					97	34	4	0	0	0	0.0569	3	5505	5461;5505;5554		41.84	9.5341	1	547110			3002	161	2072	2085	3901;3902;3903	3902					0.019128313724195323
EPQPGEARL	9	Unmodified	_EPQPGEARL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7591247558594	2	498.759081	995.503609	-0.028028	-1.3979E-05	0.1468	7.3217E-05	0.11877	5.9237E-05	498.7591448100788	32.975	1.2365	32.975	32.696	33.933	0					131	47	4	0	0	0	0.048027	4	5157	5157;5204;5245;5300		43.772	9.3707	1	1039900			3003	1654	2073	2086	3904;3905;3906;3907	3904					0.005676954037653559
EPQPGEARL	9	Unmodified	_EPQPGEARL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.75909423828125	2	498.759081	995.503609	0.013525	6.7457E-06	0.10214	5.0941E-05	0.11566	5.7687E-05	498.7591048697127	32.915	1.1101	32.99	32.734	33.845	0.074322					124	46	4	0	0	0	0.081383	3	5063	5063;5107;5166		36.506	3.7205	1	871220			3004	1654	2073	2086	3908;3909;3910	3908					0.005676954037653559
EPRDGSPEA	9	Unmodified	_EPRDGSPEA_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2171325683594	2	479.217246	956.419939	-0.58333	-0.00027954	0.17508	8.3901E-05	-0.40825	-0.00019564	479.2173049377649	19.794	0.53025	19.794	19.611	20.141	0					132	58	3	0	0	0	0.30757	2	1421	1421;1480		5.7319	2.1354	1	80921			3005	3383	2074	2087	3911;3912	3911					-0.06001460763945943
EPRDGSPEA	9	Unmodified	_EPRDGSPEA_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.21710205078125	2	479.217246	956.419939	-0.14768	-7.0769E-05	-0.96575	-0.0004628	-1.1134	-0.00053357	479.2170576465105	19.694	0.22341	19.789	19.667	19.89	0.095232					49	26	3	0	0	0	0.30757	1	1331	1331		5.7319	2.1354	1	24101			3006	3383	2074	2087	3913	3913					-0.06001460763945943
EPRTMFSLDTY	11	Unmodified	_EPRTMFSLDTY_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.8796081542969	3	453.879827	1358.61765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.359	1	46.359	45.859	46.859	0								0	0	0	0.33405	1	9214	9214		2.8433	0.75728	1				3007	3892	2075	2088	3914	3914					-0.047312026163126575
EPSALPTVSN	10	Unmodified	_EPSALPTVSN_					0	0	0			REV__ENST00000461744.5_1_10:6267193-6270182:+|nuORF	REV__ENST00000461744.5_1_10:6267193-6270182:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.24627685546875	2	507.758746	1013.50294	-0.15284	-7.7608E-05	-0.77895	-0.00039552	-0.9318	-0.00047313	507.75821842584895	27.346	0.5941	27.432	27.237	27.831	0.0867					81	46	3	0	0	0	0.45945	1	3344	3344		2.9952	0	1	266200	+		3008	10217	2076	2089	3915	3915					-0.00327144035964011
EPSEVFINR	9	Unmodified	_EPSEVFINR_					0	0	0		nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7796020507812	2	545.780013	1089.54547	-0.36075	-0.00019689	0.27024	0.00014749	-0.090514	-4.9401E-05	545.7800274602604	42.568	0.78228	42.568	42.248	43.03	0					71	26	4	0	0	0	0.091044	3	8047	8047;8094;8167		34.402	11.253	1	301210			3009	2152	2077	2090	3916;3917;3918	3916					0.0042825109228488145
EPSEVFINR	9	Unmodified	_EPSEVFINR_					0	0	0		nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7798461914062	2	545.780013	1089.54547	-0.21096	-0.00011514	0.14353	7.8333E-05	-0.067439	-3.6807E-05	545.780037596026	42.492	0.72323	42.582	42.316	43.039	0.089764					67	26	4	0	0	0	0.16392	2	7891	7891;7988		22.736	5.794	1	248720			3010	2152	2077	2090	3919;3920	3919					0.0042825109228488145
EPSPDFPAL	9	Unmodified	_EPSPDFPAL_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7787780761719	2	486.737283	971.460012	0.33406	0.0001626	-0.36798	-0.00017911	-0.033914	-1.6507E-05	486.73705881042133	70.203	0.41754	70.203	69.933	70.351	0					22	15	2	0	0	0	0.13538	1	16490	16490		28.487	19.139	1	82445			3011	1481	2078	2091	3921	3921					-0.026859140933765957
EPSVNLLSPH	10	Unmodified	_EPSVNLLSPH_					0	0	0		HIVEP2|p.L385V|1|0.29|ENSG00000010818|chr6:142773586-142773586|G/C|missense_variant	HIVEP2|p.L385V|1|0.29|ENSG00000010818|chr6:142773586-142773586|G/C|missense_variant	HIVEP2|p.L385V|1|0.29|ENSG00000010818|chr6:142773586-142773586|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7891235351562	2	546.787838	1091.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.13	1	42.13	41.63	42.63	0								0	0	0	0.33784	1	7936	7936		2.7352	0.67545	1				3012	7355	2079	2092	3922	3922					0.019005376093446102
EPTDVVDKL	9	Unmodified	_EPTDVVDKL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.268798828125	2	508.268947	1014.52334	0.19008	9.661E-05	-0.2749	-0.00013972	-0.084824	-4.3113E-05	508.26869588873353	48.342	0.61988	48.342	48.094	48.714	0					45	20	3	0	0	0	0.2359	1	9827	9827		14.405	8.1996	1	281800			3013	752	2080	2093	3923	3923					0.01666026623865946
EPTDVVDKL	9	Unmodified	_EPTDVVDKL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2686462402344	2	508.268947	1014.52334	0.33994	0.00017278	-0.54933	-0.00027921	-0.20939	-0.00010643	508.2686822839706	48.248	0.85162	48.328	47.813	48.665	0.080029					53	29	3	0	0	0	0.2359	1	9668	9668		14.405	7.1161	1	257540			3014	752	2080	2093	3924	3924					0.01666026623865946
EPTFTIETSGI	11	Unmodified	_EPTFTIETSGI_					0	0	0			REV__ENSG00000137996|ENST00000370128|RTCA	REV__ENSG00000137996|ENST00000370128|RTCA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2997436523438	2	597.798069	1193.58158	-0.089842	-5.3707E-05	-1.8873	-0.0011282	-1.9771	-0.0011819	597.7966281552892	106.77	0.72027	106.77	106.55	107.27	0					99	69	2	0	0	0	0.40693	1	27636	27636		2.7352	1.0826	1	211650	+		3015	9299	2081	2094	3925	3925					-0.007463365215016893
EPTIRTSPP	9	Unmodified	_EPTIRTSPP_					0	0	0			REV__ENST00000480686.5_1_1:45110332-45115698:+|nuORF	REV__ENST00000480686.5_1_1:45110332-45115698:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2893371582031	2	499.269281	996.52401	-0.035879	-1.7913E-05	0.64373	0.0003214	0.60786	0.00030348	499.26946425075903	45.858	0.91941	45.858	45.53	46.449	0					105	31	4	0	0	0	0.11547	1	9088	9088		29.082	1.4528	1	2204300	+		3016	10724	2082	2095	3926	3926					0.025608660635725755
EPTLELMAYPA	11	Unmodified	_EPTLELMAYPA_					0	0	0			REV__ENSG00000132518|ENST00000254854|GUCY2D	REV__ENSG00000132518|ENST00000254854|GUCY2D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7882080078125	2	617.804839	1233.59513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.247	1	81.247	80.747	81.747	0								0	0	0	0.27893	1	19843	19843		17.113	1.8644	1		+		3017	9120	2083	2096	3927	3927					-0.012328020138966167
EPTTNQNWNP	10	Unmodified	_EPTTNQNWNP_					0	0	0			REV__ENSG00000041802|ENST00000265245|LSG1	REV__ENSG00000041802|ENST00000265245|LSG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.7669677734375	2	600.767634	1199.52072	-0.054881	-3.2971E-05	-0.45823	-0.00027529	-0.51311	-0.00030826	600.7670580226709	29.656	0.43464	29.656	29.488	29.923	0					53	20	4	0	0	0	0.45794	1	4225	4225		3.2813	1.2216	1	92328	+		3018	8031	2084	2097	3928	3928					-0.07106428781071372
EPVALKLDYK	10	Unmodified	_EPVALKLDYK_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000032840	REV__CON__ENSEMBL:ENSBTAP00000032840	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7879028320312	2	588.337164	1174.65977	0.85728	0.00050437	0.23166	0.0001363	1.0889	0.00064067	588.3373109877011	70.629	0.15997	70.689	70.596	70.756	0.060562					11	6	2	0	0	0	0.31621	1	16454	16454		10.8	2.8894	1	78829	+	+	3019	7831	2085	2098	3929	3929					0.07943140854376907
EPVEIEVEI	9	Unmodified	_EPVEIEVEI_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7767333984375	2	528.776605	1055.53866	0.41932	0.00022173	0.13814	7.3047E-05	0.55746	0.00029477	528.776638313307	74.387	0.54485	74.436	74.156	74.701	0.048546					32	19	2	0	0	0	0.23975	1	17602	17602		14.838	3.198	1	407320			3020	4488	2086	2099	3930	3930					0.013108934210549705
EPVLFSTTI	9	Unmodified	_EPVLFSTTI_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4;ENSG00000073734|ENST00000650372|ABCB11	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.776123046875	2	503.776408	1005.53826	-0.075498	-3.8034E-05	0.14338	7.2231E-05	0.06788	3.4197E-05	503.77624731084427	72.627	0.47394	72.627	72.409	72.883	0					24	16	2	0	0	0	0.2229	1	17229	17229		19.257	4.6753	1	115700			3021	352	2087	2100	3931	3931					0.03571518491855841
EPVLFSTTI	9	Unmodified	_EPVLFSTTI_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4;ENSG00000073734|ENST00000650372|ABCB11	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	503.776408	1005.53826	0.096324	4.8526E-05	0.12291	6.1921E-05	0.21924	0.00011045	503.7763686015206	72.54	0.52437	72.596	72.345	72.869	0.055939	-0.015387	-7.5593E-06	NaN	19.257	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99954			3022	352	2087	2100							0.03571518491855841
EPVQYYFTL	9	Unmodified	_EPVQYYFTL_					0	0	0		ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	ENST00000424419.6_1_1:41157373-41232429:+|nuORF	ENST00000424419.6_1_1:41157373-41232429:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.287109375	2	580.28714	1158.55973	0.69764	0.00040483	-0.71519	-0.00041501	-0.017548	-1.0183E-05	580.2866286991434	82.3	0.61485	82.3	82.036	82.651	0					61	21	4	0	0	0	0.0042703	1	20165	20165		99.755	55.897	1	912240			3023	696	2088	2101	3932	3932					-0.013210964794325264
EPVQYYFTL	9	Unmodified	_EPVQYYFTL_					0	0	0		ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	ENST00000424419.6_1_1:41157373-41232429:+|nuORF	ENST00000424419.6_1_1:41157373-41232429:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.287109375	2	580.28714	1158.55973	0.49076	0.00028478	-0.51424	-0.00029841	-0.023483	-1.3627E-05	580.2866949718414	82.29	0.59752	82.312	81.992	82.589	0.021744					62	21	4	0	0	0	0.04667	1	19998	19998		62.573	38.552	1	863130			3024	696	2088	2101	3933	3933					-0.013210964794325264
EPVWPVYLI	9	Unmodified	_EPVWPVYLI_					0	0	0			REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3104248046875	2	558.310418	1114.60628	0.6122	0.0003418	-0.24925	-0.00013916	0.36295	0.00020264	558.3102394453852	93.756	0.37294	93.756	93.506	93.879	0					17	13	2	0	0	0	0.22344	1	23656	23656		15.847	0	1	247480	+		3025	12021	2089	2102	3934	3934					0.05356388142513424
EPVWPVYLI	9	Unmodified	_EPVWPVYLI_					0	0	0			REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.767578125	2	558.310418	1114.60628	0.6122	0.0003418	-0.24925	-0.00013916	0.36295	0.00020264	558.3102394453852	93.756	0.37294	93.756	93.506	93.879	0					17	13	2	0	0	0	0.2446	1	23678	23678		11.64	0	1	247480	+		3026	12021	2089	2102	3935	3935					0.05356388142513424
EPVYIDLTL	9	Unmodified	_EPVYIDLTL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7897338867188	2	531.789515	1061.56448	0.59246	0.00031507	0.02193	1.1662E-05	0.61439	0.00032673	531.7894938281931	85.233	1.3334	85.233	84.929	86.263	0					117	53	3	0	0	0	1.7467E-05	2	21047	20996;21047		141.83	67.404	1	1479700			3027	3948	2090	2103	3936;3937	3937					0.03615787663329684
EPVYIDLTL	9	Unmodified	_EPVYIDLTL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.789794921875	2	531.789515	1061.56448	0.77834	0.00041391	-0.10298	-5.4762E-05	0.67536	0.00035915	531.7894294327126	85.258	1.1674	85.281	84.919	86.086	0.023132					93	45	3	0	0	0	6.8107E-09	2	20888	20839;20888		164.52	64.144	1	1711900			3028	3948	2090	2103	3938;3939	3939					0.03615787663329684
EPVYIEGR	8	Unmodified	_EPVYIEGR_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.24053955078125	2	481.750724	961.486896	-0.49435	-0.00023815	-0.64325	-0.00030989	-1.1376	-0.00054804	481.74883429767686	23.959	0.33915	23.959	23.818	24.158	0					68	30	3	0	0	0	0.52924	1	2538	2538		8.5933	0.68312	1	51458	+		3029	8707	2091	2104	3940	3940					0.004611945178112364
EQAIDITK	8	Unmodified	_EQAIDITK_					0	0	0			REV__nc|ENSG00000278311|Q9H3C7-3|GGNBP2	REV__nc|ENSG00000278311|Q9H3C7-3|GGNBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2498779296875	2	459.250557	916.486562	0.85243	0.00039148	-1.9699	-0.00090466	-1.1174	-0.00051318	459.2494381364748	84.853	0.42854	84.853	84.704	85.132	0					33	16	3	0	0	0	0.53423	1	20982	20982		5.2307	0	1	232080	+		3030	11145	2092	2105	3941	3941					0.024977747979392007
EQAIDITK	8	Unmodified	_EQAIDITK_					0	0	0			REV__nc|ENSG00000278311|Q9H3C7-3|GGNBP2	REV__nc|ENSG00000278311|Q9H3C7-3|GGNBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.25	2	459.250557	916.486562	0.45303	0.00020805	-1.654	-0.00075962	-1.201	-0.00055157	459.2496203735342	84.781	0.40006	84.804	84.691	85.091	0.023125					31	17	2	0	0	0	0.53423	1	20804	20804		5.2307	0	1	196290	+		3031	11145	2092	2105	3942	3942					0.024977747979392007
EQCAEEEKTI	10	Unmodified	_EQCAEEEKTI_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.264404296875	2	590.263536	1178.51252	0.40743	0.00024049	0.30931	0.00018257	0.71674	0.00042306	590.2633107295966	61.543	1.0604	61.543	61.361	62.421	0					82	51	2	0	0	0	0.40359	1	13828	13828		11.495	2.1116	1	775200	+		3032	10307	2093	2106	3943	3943					-0.06959743812740271
EQDFHLEI	8	Unmodified	_EQDFHLEI_					0	0	0		ENSG00000247596|ENST00000305533|TWF2;nc|ENSG00000239732|Q9NR96-4|TLR9	ENSG00000247596|ENST00000305533|TWF2	ENSG00000247596|ENST00000305533|TWF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.309814453125	2	515.745639	1029.47673	0.62807	0.00032392	-0.27788	-0.00014332	0.35019	0.00018061	515.7452604410005	54.946	0.51034	55.011	54.803	55.314	0.065128					32	20	2	0	0	0	0.3576	1	11743	11743		8.5933	8.5933	1	257850			3033	5671	2094	2107	3944	3944					-0.036834132074318404
EQEKRREREVR	11	Unmodified	_EQEKRREREVR_					0	0	0			REV__ENSG00000130254|ENST00000252542|SAFB2	REV__ENSG00000130254|ENST00000252542|SAFB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.6095275878906	3	505.609722	1513.80734	0.26105	0.00013199	0.40689	0.00020573	0.66793	0.00033771	505.6098673029119	68.643	0.68959	68.705	68.452	69.142	0.062126					75	25	4	0	0	0	0.41359	1	15950	15950		1.2148	0.20126	1	518460	+		3034	9051	2095	2108	3945	3945					0.07098425441063227
EQELIYFTF	9	Unmodified	_EQELIYFTF_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2958374023438	2	595.292422	1188.57029	0.48836	0.00029072	-0.41299	-0.00024585	0.075366	4.4865E-05	595.2920333496828	92.418	0.57681	92.418	92.19	92.767	0					52	21	3	0	0	0	0.17428	1	23236	23236		21.537	12.154	1	684810			3035	2778	2096	2109	3946	3946					-0.016451138250204167
EQELIYFTF	9	Unmodified	_EQELIYFTF_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2923583984375	2	595.292422	1188.57029	0.38856	0.0002313	-0.25642	-0.00015265	0.13213	7.8658E-05	595.2920464605362	92.478	1.005	92.515	92.19	93.195	0.03653					78	37	3	0	0	0	0.012041	1	23078	23078		63.961	39.94	1	657740			3036	2778	2096	2109	3947	3947					-0.016451138250204167
EQEYKRWD	8	Unmodified	_EQEYKRWD_					0	0	0			REV__ENSG00000085760|ENST00000263629|MTIF2	REV__ENSG00000085760|ENST00000263629|MTIF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2877807617188	2	577.26727	1152.51999	0.29192	0.00016852	3.2015	0.0018481	3.4934	0.0020166	577.2694234522106	36.756	0.3245	36.838	36.662	36.987	0.081711					30	13	3	0	0	0	0.53557	1	6176	6176		4.3292	0.38484	1	73169	+		3037	8266	2097	2110	3948	3948					-0.050172234301498975
EQFAASAAR	9	Unmodified	_EQFAASAAR_					0	0	0			REV__nc|ENSG00000141556|Q9BTW9-5|TBCD	REV__nc|ENSG00000141556|Q9BTW9-5|TBCD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2236022949219	2	475.738148	949.461744	-0.20468	-9.7375E-05	-0.43774	-0.00020825	-0.64242	-0.00030562	475.7377449183559	21.216	0.22286	21.316	21.204	21.427	0.099499					36	24	2	0	0	0	0.25699	1	1699	1699		3.5965	1.2938	1	20251	+		3038	9408	2098	2111	3949	3949					-0.01500860284772898
EQFGPDPAR	9	Unmodified	_EQFGPDPAR_					0	0	0			REV__ENSG00000176978|ENST00000371579|DPP7	REV__ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2802429199219	2	508.743431	1015.47231	-0.14473	-7.3628E-05	0.2344	0.00011925	0.089679	4.5624E-05	508.7436621818073	32.701	0.43686	32.701	32.548	32.985	0					51	20	3	0	0	0	0.23975	1	5102	5102		14.838	14.838	1	61045	+		3039	10418	2099	2112	3950	3950					-0.0348087763032936
EQFGPDPAR	9	Unmodified	_EQFGPDPAR_					0	0	0			REV__ENSG00000176978|ENST00000371579|DPP7	REV__ENSG00000176978|ENST00000371579|DPP7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	508.743431	1015.47231	-0.080335	-4.087E-05	0.22573	0.00011484	0.1454	7.397E-05	508.74354883918295	32.657	0.47266	32.731	32.544	33.017	0.07378	0.014826	-3.6672E-06	NaN	10.074	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62214	+		3040	10418	2099	2112							-0.0348087763032936
EQFLKQHFETL	11	Unmodified	_EQFLKQHFETL_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;ENST00000502695.1_1_15:42114172-42114769:+|nuORF;ENST00000506301.1_1_15:42114172-42114999:+|nuORF;ENST00000505061.5_1_15:42111671-42117631:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.91387939453125	3	473.913748	1418.71942	0.20975	9.9406E-05	-0.44637	-0.00021154	-0.23662	-0.00011214	473.91357180667154	68.853	0.57439	68.853	68.558	69.132	0					48	21	4	0	0	0	0.40904	1	16048	16048		2.2527	1.0379	1	172370			3041	2867	2100	2113	3951	3951					0.026804117977462738
EQFLLGFYD	9	Unmodified	_EQFLLGFYD_					0	0	0			REV__nc|ENSG00000079819|O43491-2|EPB41L2	REV__nc|ENSG00000079819|O43491-2|EPB41L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7977905273438	2	566.27149	1130.52843	0.37504	0.00021238	0.62022	0.00035121	0.99526	0.00056359	566.7747233763336	67.615	1.4908	67.615	67.039	68.53	0					83	55	2	0	0	0	0.1789	1	15877	15877		29.082	12.932	1	168870	+		3042	8224	2101	2114	3952	3952					-0.031616695135198825
EQFPPVTETKM	11	Unmodified	_EQFPPVTETKM_					0	0	0			REV__nc|ENSG00000120451|Q92543-2|SNX19	REV__nc|ENSG00000120451|Q92543-2|SNX19	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.8829345703125	3	436.216439	1305.62749	-0.073377	-3.2008E-05	1.0872	0.00047424	1.0138	0.00044224	436.21708126842367	24.256	0.44294	24.256	24.065	24.508	0					63	41	2	0	0	0	0.31072	1	2650	2650		4.7159	1.1289	1	43001	+		3043	8876	2102	2115	3953	3953					-0.013100146109536581
EQFQSRMQDL	10	Unmodified	_EQFQSRMQDL_					0	0	0			REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3170166015625	2	641.298244	1280.58194	0.34488	0.00022117	1.0689	0.00068549	1.4138	0.00090666	641.7998839259209	68.529	0.49016	68.529	68.127	68.617	0					31	16	3	0	0	0	0.43214	1	15898	15898		8.1555	0	1	78739	+		3044	9229	2103	2116	3954	3954					-0.04713240073306224
EQHFQGELQ	9	Unmodified	_EQHFQGELQ_					0	0	0			REV__ENSG00000132854|ENST00000371153|KANK4	REV__ENSG00000132854|ENST00000371153|KANK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8163452148438	2	558.259445	1114.50434	0.029379	1.6401E-05	0.19816	0.00011062	0.22754	0.00012702	558.259106332783	42.749	0.23037	42.839	42.703	42.934	0.089764					13	8	2	0	0	0	0.21603	1	7994	7994		14.838	4.7643	1	36699	+		3045	9131	2104	2117	3955	3955					-0.04833509947184211
EQHYSQLYW	9	Unmodified	_EQHYSQLYW_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.283935546875	2	627.28292	1252.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.89	1	115.89	115.39	116.39	0								0	0	0	0.2927	1	29531	29531		0.52476	0.066424	1				3046	2858	2105	2118	3956	3956					-0.06488650396045159
EQIFPFIL	8	Unmodified	_EQIFPFIL_					0	0	0			REV__ENSG00000142583|ENST00000377424|SLC2A5	REV__ENSG00000142583|ENST00000377424|SLC2A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7837219238281	2	503.784036	1005.55352	0.19685	9.9169E-05	0.075061	3.7814E-05	0.27191	0.00013698	503.78403348076813	95.491	0.72859	95.53	95.308	96.036	0.038872					51	34	2	0	0	0	0.49148	1	24061	24061		13.906	0.39817	1	449430	+		3047	9437	2106	2119	3957	3957					0.0509643007970908
EQIVSFYRV	9	Unmodified	_EQIVSFYRV_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3067626953125	2	570.806031	1139.59751	0.31832	0.0001817	-0.11247	-6.4198E-05	0.20585	0.0001175	570.8063433002462	78.74	2.0864	78.77	78.451	80.538	0.030159					249	74	6	0	0	0	0.24021	1	18832	18832		13.906	1.6654	1	52774000			3048	3437	2107	2120	3958	3958					0.033294145060153824
EQKENQSF	8	Unmodified	_EQKENQSF_					0	0	0			REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1	REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.2300109863281	2	505.232896	1008.45124	-0.23991	-0.00012121	-0.67903	-0.00034307	-0.91894	-0.00046428	505.23207669575737	44.145	0.6448	44.145	43.773	44.418	0					41	21	3	0	0	0	0.52902	1	8621	8621		8.7454	3.0136	1	223370	+		3049	13083	2108	2121	3959	3959					-0.052648877298452135
EQKITYYF	8	Unmodified	_EQKITYYF_					0	0	0			REV__tr|U7SMJ0|U7SMJ0_FUSNUAcyl-CoAthioesterhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01888PE=4SV=1	REV__tr|U7SMJ0|U7SMJ0_FUSNUAcyl-CoAthioesterhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01888PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7756958007812	2	546.274032	1090.53351	0.27907	0.00015245	-0.24715	-0.00013501	0.031921	1.7437E-05	546.2739553635946	87.238	0.95085	87.238	86.932	87.883	0					99	37	4	0	0	0	0.53202	1	21801	21801		6.7232	2.3939	1	1375900	+		3050	13091	2109	2122	3960	3960					-0.008133656509244247
EQKMKCPH	8	Unmodified	_EQKMKCPH_					0	0	0		ENST00000505323.1_1_5:108260361-108380497:+|nuORF;nc|ENSG00000151422|P16591-3|FER	ENST00000505323.1_1_5:108260361-108380497:+|nuORF	ENST00000505323.1_1_5:108260361-108380497:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7386169433594	2	500.73878	999.463006	-0.038808	-1.9433E-05	-0.63382	-0.00031738	-0.67263	-0.00033681	500.73847079231325	25.304	0.45242	25.4	25.216	25.669	0.096075					78	38	3	0	0	0	0.3576	1	2777	2777		0.69038	0.69038	1	57777			3051	6886	2110	2123	3961	3961					-0.03674685511862208
EQLCRRTCL	9	Unmodified	_EQLCRRTCL_					0	0	0		ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515344.1_1_6:43171139-43171751:+|nuORF	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7653198242188	2	561.281343	1120.54813	-0.067537	-3.7907E-05	1.5024	0.00084326	1.4348	0.00080535	561.2818328152157	43.517	1.2609	43.517	42.886	44.147	0					87	40	4	0	0	0	0.32375	1	8218	8218		3.5965	0.31518	1	509910			3052	1769	2111	2124	3962	3962					-0.007319400460801262
EQLNSFLERK	10	Unmodified	_EQLNSFLERK_					0	0	0			REV__ENSG00000185432|ENST00000332160|METTL7A	REV__ENSG00000185432|ENST00000332160|METTL7A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.8152465820312	2	632.338227	1262.6619	0.54029	0.00034165	1.612	0.0010194	2.1523	0.001361	632.8405889497827	98.21	0.32308	98.252	98.019	98.342	0.041939					27	17	3	0	0	0	0.31547	1	24836	24836		13.615	6.9845	1	99192	+		3053	10670	2112	2125	3963	3963					0.04107569592156324
EQLRWGAP	8	Unmodified	_EQLRWGAP_					0	0	0			REV__ENST00000336714.7_1_20:18491522-18491615:+|nuORF	REV__ENST00000336714.7_1_20:18491522-18491615:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.28424072265625	2	478.751059	955.487565	-0.076391	-3.6572E-05	-1.4685	-0.00070305	-1.5449	-0.00073962	478.7502944782438	49.037	0.36523	49.037	48.858	49.223	0					17	12	2	0	0	0	0.3576	1	10045	10045		6.7232	1.4925	1	68186	+		3054	11443	2113	2126	3964	3964					0.008040339575131839
EQLVAVELKTN	11	Unmodified	_EQLVAVELKTN_					0	0	0			REV__ENST00000438948.1_1_22:20287467-20300466:+|nuORF	REV__ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.34716796875	2	622.34826	1242.68197	-0.050456	-3.1401E-05	-1.0913	-0.00067914	-1.1417	-0.00071054	622.3473921778954	89.889	2.3544	89.923	88.979	91.333	0.034058					155	92	3	0	0	0	0.40055	1	22169	22169		4.1895	0	1	410760	+		3055	11876	2114	2127	3965	3965					0.07033320532127618
EQPETYYKW	9	Unmodified	_EQPETYYKW_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.2860107421875	2	622.285128	1242.5557	-0.14073	-8.7574E-05	0.79608	0.00049539	0.65536	0.00040782	622.2858250690567	49.759	0.37819	49.759	49.59	49.968	0					24	12	3	0	0	0	0.17428	1	10250	10250		21.537	10.713	1	91568			3056	4038	2115	2128	3966	3966					-0.05587185973149644
EQPETYYKW	9	Unmodified	_EQPETYYKW_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.285888671875	2	622.285128	1242.5557	-0.0023003	-1.4314E-06	0.57921	0.00036043	0.57691	0.000359	622.2856120482413	49.649	0.47388	49.726	49.536	50.01	0.076607					28	16	3	0	0	0	0.17428	1	10078	10078		21.537	7.6309	1	77759			3057	4038	2115	2128	3967	3967					-0.05587185973149644
EQQQEYHH	8	Unmodified	_EQQQEYHH_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3;REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7353515625	2	549.733594	1097.45264	-0.069168	-3.8024E-05	2.2729	0.0012495	2.2038	0.0012115	549.7348379974877	28.524	0.28496	28.524	28.391	28.676	0					22	11	3	0	0	0	0.3576	1	3839	3839		0.79363	0.10326	1	29408	+		3058	8691;10193	2116	2129	3968	3968					-0.09219253641094838
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3095703125	3	516.309829	1545.90766	0.59905	0.0003093	-0.36612	-0.00018903	0.23293	0.00012026	516.3095187456305	97.597	0.89308	97.638	97.112	98.005	0.040855					80	43	3	0	0	0	0.41892	1	24631	24631		0	0	1	93944			3059	5096	2117	2130	3969	3969					0.1565412728539286
EQSGPRSAVSW	11	Unmodified	_EQSGPRSAVSW_					0	0	0			REV__nc|ENSG00000117155|Q9Y2D8-3|SSX2IP	REV__nc|ENSG00000117155|Q9Y2D8-3|SSX2IP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2750854492188	2	602.291276	1202.568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.164	1	56.231	55.731	56.731	0.066452								0	0	0	0.29341	1	12055	12055		15.248	0.8431	1		+		3060	8824	2118	2131	3970	3970					-0.025181495100923712
EQSLCLLLCE	10	Unmodified	_EQSLCLLLCE_					0	0	0		ENST00000369869.1_1_1:110032306-110035219:+|nuORF;ENST00000497545.5_1_1:110032306-110034363:+|nuORF	ENST00000369869.1_1_1:110032306-110035219:+|nuORF	ENST00000369869.1_1_1:110032306-110035219:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7921752929688	2	575.777767	1149.54098	0.21083	0.00012139	2.1461	0.0012357	2.3569	0.0013571	575.7790149099868	73.625	2.0703	73.625	73.541	75.611	0					129	76	2	0	0	0	0.23357	1	17529	17529		29.841	4.4413	1	1497800			3061	6198	2119	2132	3971	3971					-0.027807174371446308
EQWDYYKS	8	Unmodified	_EQWDYYKS_					0	0	0		nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7227172851562	2	559.743096	1117.47164	-0.040512	-2.2676E-05	-0.41871	-0.00023437	-0.45922	-0.00025705	559.7428451169544	43.361	0.31814	43.361	43.179	43.497	0					15	10	2	0	0	0	0.3576	1	8316	8316		2.3027	0.24298	1	29908			3062	7574	2120	2133	3972	3972					-0.08239717070068764
EQYLEVELCPH	11	Unmodified	_EQYLEVELCPH_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.5507507324219	3	453.879827	1358.61765	0.21007	9.5347E-05	3.1088	0.001411	3.3189	0.0015064	454.21581348587915	46.869	0.69034	46.952	46.741	47.431	0.083096					64	26	3	0	0	0	0.41309	1	9219	9219		1.3296	0	1	86869			3063	3461	2121	2134	3973	3973					-0.047312026163126575
EQYTWRSPF	9	Unmodified	_EQYTWRSPF_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.19268798828125	3	405.192734	1212.55637	0.37139	0.00015049	-0.34754	-0.00014082	0.023856	9.6662E-06	405.52692987411257	39.002	0.40464	39.002	38.781	39.186	0					25	15	2	0	0	0	0.32112	1	7011	7011		2.2828	0.5405	1	40400	+		3064	10861	2122	2135	3974	3974					-0.04140346533426964
ERAFLLVWLT	10	Unmodified	_ERAFLLVWLT_					0	0	0			REV__ENST00000424697.5_1_7:99668324-99668396:-|nuORF	REV__ENST00000424697.5_1_7:99668324-99668396:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5778503417969	3	416.576408	1246.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.069	1	46.069	45.569	46.569	0								0	0	0	0.33762	1	9126	9126		1.4551	0.34536	1		+		3065	11824	2123	2136	3975	3975					0.09390839845241317
ERAQEQLDRI	10	Unmodified	_ERAQEQLDRI_					0	0	0		ENST00000406170.1_1_6:111751926-111752229:+|nuORF	ENST00000406170.1_1_6:111751926-111752229:+|nuORF	ENST00000406170.1_1_6:111751926-111752229:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.90167236328125	3	419.889714	1256.64731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.261	1	19.261	18.761	19.761	0								0	0	0	0.33086	1	1316	1316		10.899	5.3757	1				3066	6378	2124	2137	3976	3976					0.02925497444039138
ERAVMWSEV	9	Unmodified	_ERAVMWSEV_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8082885742188	2	553.768591	1105.52263	0.0045324	2.5099E-06	0.15019	8.3169E-05	0.15472	8.5679E-05	553.7686812133269	30.003	0.94596	30.003	29.736	30.682	0					65	46	2	0	0	0	0.25644	1	4437	4437		3.9444	0.3479	1	25899	+		3067	9944	2125	2138	3977	3977					-0.02591091296835657
ERCFYKFIN	9	Unmodified	_ERCFYKFIN_					0	0	0			REV__ENST00000498605.1_1_15:44093641-44093782:+|nuORF	REV__ENST00000498605.1_1_15:44093641-44093782:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.203857421875	3	407.202465	1218.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.733	1	82.733	82.233	83.233	0								0	0	0	0.28631	1	20295	20295		0.96228	0.33545	1		+		3068	12196	2126	2139	3978	3978					-0.014985255087822225
ERDSDDERPSF	11	Unmodified	_ERDSDDERPSF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;ENST00000479489.5_1_22:26902719-26906244:-|nuORF	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.5290222167969	3	451.528622	1351.56404	0.61177	0.00027623	0.11892	5.3698E-05	0.73069	0.00032993	451.5287301239209	67.517	0.53235	67.517	67.239	67.771	0					46	20	3	0	0	0	0.41309	1	15599	15599		1.3296	0.11481	1	197350			3069	1161	2127	2140	3979	3979					-0.09768283794483068
EREEHLAKI	9	Unmodified	_EREEHLAKI_					0	0	0		ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92;ENST00000595588.5_2_2:98290935-98319166:+|nuORF;ENST00000601509.5_2_2:98287946-98319166:+|nuORF	ENST00000451384.6_2_2:98292117-98319261:+|nuORF	ENST00000451384.6_2_2:98292117-98319261:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8076171875	2	562.806562	1123.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.689	1	19.689	19.189	20.189	0								0	0	0	0.29303	1	1413	1413		0.45834	0.057624	1				3070	5612	2128	2141	3980	3980					0.04171628874951239
EREELEPECI	10	Unmodified	_EREELEPECI_					0	0	0			REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF	REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.25927734375	2	623.784635	1245.55472	0.31949	0.00019929	1.7178	0.0010715	2.0373	0.0012708	623.7854341425374	85.916	0.46202	85.941	85.796	86.258	0.025169					27	16	2	0	0	0	0.31532	1	21070	21070		13.042	1.5478	1	120030	+		3071	8463	2129	2142	3981	3981					-0.058237684043433546
EREPQQTLW	9	Unmodified	_EREPQQTLW_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.796142578125	2	593.796195	1185.57784	0.75994	0.00045125	0.41239	0.00024487	1.1723	0.00069612	593.7958377376802	84.475	0.41934	84.475	84.367	84.786	0					38	27	2	0	0	0	0.037705	2	20801	20801;20860		46.021	4.1813	1	1315000	+		3072	9215	2130	2143	3982;3983	3982					-0.00752961504713312
ERETITFF	8	Unmodified	_ERETITFF_					0	0	0		UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant;nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2510375976562	2	521.763832	1041.51311	0.46925	0.00024484	-0.30272	-0.00015795	0.16653	8.689E-05	521.7635427788761	74.874	0.45627	74.874	74.555	75.011	0					26	16	2	0	0	0	0.52502	1	17891	17891		9.3474	0.60203	1	103050			3073	3635	2131	2144	3984	3984					-0.00598536310712916
EREVLWPEE	9	Unmodified	_EREVLWPEE_					0	0	0			REV__ENSG00000256223|ENST00000248211|ZNF10	REV__ENSG00000256223|ENST00000248211|ZNF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.7923583984375	2	593.790578	1185.5666	0.62407	0.00037057	1.343	0.00079747	1.9671	0.001168	593.7914494072699	85.276	0.7131	85.299	85.007	85.72	0.023125					60	28	3	0	0	0	0.20358	1	20866	20866		18.146	1.0335	1	960340	+		3074	11095	2132	2145	3985	3985					-0.01875783598848102
EREWRTQQRYL	11	Unmodified	_EREWRTQQRYL_					0	0	0		NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant;nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant	NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7508544921875	3	522.270817	1563.79062	0.18637	9.7337E-05	-1.0846	-0.00056644	-0.89819	-0.0004691	522.6045500340367	55.996	0.31413	56.062	55.869	56.183	0.066448					23	11	4	0	0	0	0.31101	1	11986	11986		0.094841	0	1	162460			3075	4387	2133	2146	3986	3986					0.03127924555133177
ERFPQAFFCM	10	Unmodified	_ERFPQAFFCM_					0	0	0		ENSG00000102057|ENST00000218176|KCND1	ENSG00000102057|ENST00000218176|KCND1	ENSG00000102057|ENST00000218176|KCND1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.2859497070312	2	638.286094	1274.55763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.265	1	94.303	93.803	94.803	0.038086								0	0	0	0.33738	1	23642	23642		3.2813	1.6287	1				3076	1293	2134	2147	3987	3987					-0.06866171760543693
ERFTLKQYIEF	11	Unmodified	_ERFTLKQYIEF_					0	0	0			REV__NCAM2|p.L109F|1|0.14|ENSG00000154654|chr21:21284390-21284390|G/T|missense_variant	REV__NCAM2|p.L109F|1|0.14|ENSG00000154654|chr21:21284390-21284390|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.929931640625	3	491.929398	1472.76637	0.42865	0.00021086	0.18238	8.9719E-05	0.61103	0.00030058	491.92955641386044	53.69	0.39796	53.69	53.469	53.867	0					27	14	3	0	0	0	0.40738	1	11445	11445		2.6312	0	1	76885	+		3077	12931	2135	2148	3988	3988					0.048892713488839945
ERFVHCPARF	10	Unmodified	_ERFVHCPARF_					0	0	0		ENST00000319540.8_1_4:83551356-83551434:-|nuORF	ENST00000319540.8_1_4:83551356-83551434:-|nuORF	ENST00000319540.8_1_4:83551356-83551434:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.56207275390625	3	421.213475	1260.6186	0.62883	0.00026487	-1.4724	-0.00062018	-0.84354	-0.00035531	421.2128300670021	71.019	0.35171	71.019	70.888	71.239	0					15	11	2	0	0	0	0.43061	1	16760	16760		8.4443	0	1	158630			3078	6028	2136	2149	3989	3989					-0.0012889866609384626
ERGDQYFVL	9	Unmodified	_ERGDQYFVL_					0	0	0		tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1	tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1	tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7811889648438	2	563.780013	1125.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.084	1	42.174	41.674	42.674	0.089764								0	0	0	0.26267	1	7794	7794		6.7232	0.51738	1				3079	13602	2137	2150	3990	3990					-0.012277489077177961
ERHMSEFMECN	11	Unmodified	_ERHMSEFMECN_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.5162658691406	3	471.517907	1411.53189	-0.65362	-0.00030819	-1.8263	-0.00086113	-2.4799	-0.0011693	471.51712415892956	41.552	0.85337	41.642	41.332	42.186	0.089767					45	34	2	0	0	0	0.41713	1	7603	7603		0.40827	0.26837	1	58093			3080	2418	2138	2151	3991	3991					-0.15741434065103022
ERHMSEFMECN	11	Unmodified	_ERHMSEFMECN_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	471.517907	1411.53189	-0.75284	-0.00035498	-1.8112	-0.00085403	-2.5641	-0.001209	471.85140425140605	41.617	0.33864	41.617	41.407	41.745	0	-0.01255	1.6409E-05	NaN	0.40827	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46542			3081	2418	2138	2151							-0.15741434065103022
ERHTHWGV	8	Unmodified	_ERHTHWGV_					0	0	0		ENST00000415259.5_2_3:51705304-51705712:+|nuORF	ENST00000415259.5_2_3:51705304-51705712:+|nuORF	ENST00000415259.5_2_3:51705304-51705712:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2518615722656	2	511.251757	1020.48896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.4	1	105.4	104.9	105.9	0								0	0	0	0.38822	1	27150	27150		0.79363	0	1				3082	6415	2139	2152	3992	3992					-0.020463319537157076
ERKRKMIIPIM	11	Unmodified	_ERKRKMIIPIM_					0	0	0			REV__ENST00000349830.7_1_8:1806140-1808128:+|nuORF	REV__ENST00000349830.7_1_8:1806140-1808128:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.28369140625	3	472.284353	1413.83123	0.044423	2.098E-05	-1.0846	-0.00051225	-1.0402	-0.00049126	472.28390223262744	95.583	1.9189	95.583	94.685	96.604	0					122	88	2	0	0	0	0.41254	2	24252	24078;24252		1.4551	0.12547	1	964250	+		3083	11485	2140	2153	3993;3994	3994					0.14086851349543394
ERKYLKDWDI	10	Unmodified	_ERKYLKDWDI_					0	0	0			REV__nc|ENSG00000072133|Q9UK32-2|RPS6KA6	REV__nc|ENSG00000072133|Q9UK32-2|RPS6KA6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.9085998535156	3	455.910227	1364.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.412	1	55.478	54.978	55.978	0.065128								0	0	0	0.33965	1	11826	11826		0.62683	0	1		+		3084	8164	2141	2154	3995	3995					0.04108429143320791
ERLYVWLQC	9	Unmodified	_ERLYVWLQC_					0	0	0		DHCR24-PCNXL2|1|fusion;ENST00000486012.5_1_1:233231420-233297095:-|nuORF;ENST00000520463.1_1_1:233261754-233296164:-|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000135749|ENST00000258229|PCNX2	DHCR24-PCNXL2|1|fusion	DHCR24-PCNXL2|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5716552734375	3	403.874348	1208.60121	0.11417	4.6111E-05	-2.4185	-0.00097679	-2.3044	-0.00093068	404.20692198816494	39.954	0.17564	39.954	39.836	40.012	0					7	5	2	0	0	0	0.25917	1	7255	7255		1.9064	0.71303	1	11532			3085	276	2142	2155	3996	3996					0.005257610082480824
ERNFLILQR	9	Unmodified	_ERNFLILQR_					0	0	0		ENST00000563779.5_1_16:81009934-81010045:-|nuORF	ENST00000563779.5_1_16:81009934-81010045:-|nuORF	ENST00000563779.5_1_16:81009934-81010045:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.789794921875	2	594.846022	1187.67749	0.24692	0.00014688	0.12502	7.4367E-05	0.37194	0.00022124	594.845924174895	46.932	0.51959	46.932	46.744	47.263	0					37	18	3	0	0	0	0.24533	1	9378	9378		12.241	4.0851	1	147170			3086	7169	2143	2156	3997	3997					0.09115900899882945
ERNLAEQSSM	10	Unmodified	_ERNLAEQSSM_					0	0	0			REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.768798828125	2	582.769319	1163.52409	0.33295	0.00019403	0.22058	0.00012855	0.55353	0.00032258	582.7693146325414	51.97	1.584	51.97	51.529	53.113	0					171	55	4	0	0	0	0.43214	1	11203	11203		8.1555	0.54658	1	2902600	+		3087	7746	2144	2157	3998	3998					-0.05113501998744141
ERNLAEQSSM	10	Unmodified	_ERNLAEQSSM_					0	0	0			REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.769775390625	2	582.769319	1163.52409	0.5384	0.00031376	0.41912	0.00024425	0.95752	0.00055801	582.7693433459294	53.436	1.3665	53.436	53.085	54.451	0					100	52	2	0	0	0	0.44938	1	11478	11478		4.897	0.141	1	215440	+		3088	7746	2144	2157	3999	3999					-0.05113501998744141
ERNLAEQSSM	10	Unmodified	_ERNLAEQSSM_					0	0	0			REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7697143554688	2	582.769319	1163.52409	0.45407	0.00026462	-0.10882	-6.3415E-05	0.34525	0.0002012	582.7692020633053	56.15	2.4349	56.15	55.782	58.217	0					304	86	5	0	0	0	0.35104	1	12705	12705		17.113	17.113	1	17527000	+		3089	7746	2144	2157	4000	4000					-0.05113501998744141
ERNLAEQSSM	10	Unmodified	_ERNLAEQSSM_					0	0	0			REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7700805664062	2	582.769319	1163.52409	0.24487	0.0001427	0.69095	0.00040267	0.93582	0.00054537	582.7696614891018	58.627	2.4128	58.627	58.256	60.669	0					134	90	3	0	0	0	0.39662	1	12847	12847		12.241	1.4411	1	219540	+		3090	7746	2144	2157	4001	4001					-0.05113501998744141
ERNLAEQSSM	10	Unmodified	_ERNLAEQSSM_					0	0	0			REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7699584960938	2	582.769319	1163.52409	0.30005	0.00017486	0.45766	0.00026671	0.75771	0.00044157	582.7695599969959	45.042	0.88892	45.13	44.783	45.671	0.087543					86	33	4	0	0	0	0.39662	3	8612	8612;8655;8699		12.241	1.4411	1	408310	+		3091	7746	2144	2157	4002;4003;4004	4002					-0.05113501998744141
ERNLAEQSSM	10	Unmodified	_ERNLAEQSSM_					0	0	0			REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7696533203125	2	582.769319	1163.52409	0.49571	0.00028888	-0.16776	-9.7767E-05	0.32795	0.00019112	582.769167723415	56.091	2.263	56.157	55.869	58.132	0.066448					288	85	5	0	0	0	0.29844	4	12173	12173;12225;12270;12567		22.736	22.736	1	18451000	+		3092	7746	2144	2157	4005;4006;4007;4008	4005					-0.05113501998744141
ERNNRTRL	8	Unmodified	_ERNNRTRL_					0	0	0		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7964477539062	2	529.794321	1057.57409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.923	1	32.997	32.497	33.497	0.074322								0	0	0	0.38822	1	5045	5045		3.9444	0.3479	1				3093	5259	2145	2158	4009	4009					0.04760413512076411
ERPRLPIKFV	10	Unmodified	_ERPRLPIKFV_					0	0	0			REV__nc|ENSG00000101773|Q99708-3|RBBP8	REV__nc|ENSG00000101773|Q99708-3|RBBP8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8853149414062	2	627.88769	1253.76083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.588	1	95.588	95.088	96.088	0								0	0	0	0.33711	1	24206	24206		3.5965	1.098	1		+		3094	8438	2146	2159	4010	4010					0.1440963734773959
ERQDPLPGF	9	Unmodified	_ERQDPLPGF_					0	0	0			REV__ENST00000394048.9_1_12:56537649-56537871:+|nuORF	REV__ENST00000394048.9_1_12:56537649-56537871:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.25390625	2	529.766906	1057.51926	-0.19862	-0.00010522	0.18236	9.6606E-05	-0.016263	-8.6157E-06	529.7668736107578	45.447	0.51105	45.447	45.271	45.782	0					23	17	2	0	0	0	0.25416	1	8919	8919		5.2307	1.6342	1	37148	+		3095	11709	2147	2160	4011	4011					-0.00720018079186957
ERQKRVYWTY	10	Unmodified	_ERQKRVYWTY_					0	0	0			REV__nc|ENSG00000135100|P20823-5|HNF1A	REV__nc|ENSG00000135100|P20823-5|HNF1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.9164123535156	3	476.917604	1427.73098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.969	1	14.037	13.537	14.537	0.067593								0	0	0	0.34006	1	281	281		0.13989	0.056541	1		+		3096	9196	2148	2161	4012	4012					0.0342265361173304
ERQQDYVL	8	Unmodified	_ERQQDYVL_					0	0	0			REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7633666992188	2	525.764363	1049.51417	0.056523	2.9718E-05	-1.344	-0.00070661	-1.2874	-0.00067689	525.7636244764715	35.761	0.48289	35.84	35.596	36.078	0.078827					37	17	3	0	0	0	0.53858	1	5881	5881		2.3027	0.4585	1	72710	+		3097	12800	2149	2162	4013	4013					-0.008603219418091612
ERQVQIYP	8	Unmodified	_ERQVQIYP_					0	0	0			REV__ENSG00000074276|ENST00000261944|CDHR2	REV__ENSG00000074276|ENST00000261944|CDHR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7616577148438	2	516.777274	1031.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.544	1	64.613	64.113	65.113	0.068916								0	0	0	0.38822	1	14601	14601		6.7232	0.36906	1		+		3098	8183	2150	2163	4014	4014					0.02548572300474916
ERRGRSLLF	9	Unmodified	_ERRGRSLLF_					0	0	0		ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7977905273438	2	567.330539	1132.64652	0.48504	0.00027518	-1.7906	-0.0010158	-1.3055	-0.00074066	567.3293780359586	98.883	0.40684	98.925	98.758	99.165	0.041931					40	26	2	0	0	0	0.25579	1	25044	25044		4.3292	1.44	1	93461			3099	7279	2151	2164	4015	4015					0.0855074758567298
ERRRAADSRAK	11	Unmodified	_ERRRAADSRAK_					0	0	0			REV__FAM69B|p.P133R|1|0.1|ENSG00000165716|chr9:136722216-136722216|C/G|missense_variant	REV__FAM69B|p.P133R|1|0.1|ENSG00000165716|chr9:136722216-136722216|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.5828857421875	3	439.248236	1314.72288	0.30951	0.00013595	-0.076766	-3.3719E-05	0.23275	0.00010223	439.24816505344114	53.594	0.42812	53.659	53.466	53.894	0.065426					33	19	2	0	0	0	0.40316	1	11278	11278		3.5927	1.8504	1	88662	+		3100	12654	2152	2165	4016	4016					0.07810519414988448
ERRRAADSRAK	11	Unmodified	_ERRRAADSRAK_					0	0	0			REV__FAM69B|p.P133R|1|0.1|ENSG00000165716|chr9:136722216-136722216|C/G|missense_variant	REV__FAM69B|p.P133R|1|0.1|ENSG00000165716|chr9:136722216-136722216|C/G|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	439.248236	1314.72288	0.55132	0.00024217	-0.56218	-0.00024694	-0.010863	-4.7717E-06	439.2479706026449	53.604	0.47986	53.604	53.451	53.931	0	-0.027851	-0.00038705	NaN	3.5927	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59638	+		3101	12654	2152	2165							0.07810519414988448
ERRRHKKRIQR	11	Unmodified	_ERRRHKKRIQR_					0	0	0		ENST00000461933.1_1_3:169684610-169686205:+|nuORF	ENST00000461933.1_1_3:169684610-169686205:+|nuORF	ENST00000461933.1_1_3:169684610-169686205:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7698364257812	3	521.657341	1561.95019	0.21364	0.00011145	-0.38341	-0.00020001	-0.16978	-8.8565E-05	521.6571610982869	51.316	0.6783	51.386	51.154	51.832	0.069874					54	25	3	0	0	0	0.31101	1	10590	10590		0.40827	0.40827	1	105750			3102	6616	2153	2166	4017	4017					0.19169522413631057
ERSTGQGF	8	Unmodified	_ERSTGQGF_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.223388671875	2	441.209224	880.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.074	1	60.074	59.574	60.574	0								0	0	0	0.38822	1	13379	13379		9.3474	2.6243	1		+		3103	9523	2154	2167	4018	4018					-0.041091222101840685
ERSYVYAGLE	10	Unmodified	_ERSYVYAGLE_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7916870117188	2	593.790578	1185.5666	0.56202	0.00033372	1.1764	0.00069854	1.7384	0.0010323	593.7913450348073	85.24	0.56439	85.24	85.014	85.579	0					54	22	4	0	0	0	0.32016	1	21090	21090		20.415	2.2682	1	800730			3104	4772	2155	2168	4019	4019					-0.01875783598848102
ERTATTTT	8	Unmodified	_ERTATTTT_					0	0	0			REV__ENST00000586915.1_1_19:45495538-45496152:+|nuORF	REV__ENST00000586915.1_1_19:45495538-45496152:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7213134765625	2	440.722164	879.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.004	1	58.073	57.573	58.573	0.068375								0	0	0	0.38822	1	12615	12615		13.508	0	1		+		3105	8516	2156	2169	4020	4020					-0.014762727585775792
ERTATTTT	8	Unmodified	_ERTATTTT_					0	0	0			REV__ENST00000586915.1_1_19:45495538-45496152:+|nuORF	REV__ENST00000586915.1_1_19:45495538-45496152:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7213439941406	2	440.722164	879.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.174	1	58.245	57.745	58.745	0.070477								0	0	0	0.38822	1	12667	12667		13.508	0	1		+		3106	8516	2156	2169	4021	4021					-0.014762727585775792
ERTCPSKEKSN	11	Unmodified	_ERTCPSKEKSN_					0	0	0		nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.3346557617188	2	639.808976	1277.6034	0.31445	0.00020119	0.79696	0.0005099	1.1114	0.00071109	640.3112947615685	91.318	0.10881	91.318	91.269	91.378	0					5	3	2	0	0	0	0.31072	1	22892	22892		4.1895	0	1	23438			3107	2771	2157	2170	4022	4022					-0.024298550446019362
ERTSSSTI	8	Unmodified	_ERTSSSTI_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7213134765625	2	440.722164	879.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.309	1	58.379	57.879	58.879	0.070477								0	0	0	0.38275	1	12708	12708		23.148	0	1		+		3108	8820	2158	2171	4023	4023					-0.014762727585548419
ERTSSSTI	8	Unmodified	_ERTSSSTI_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.72137451171875	2	440.722164	879.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.454	1	58.524	58.024	59.024	0.070477								0	0	0	0.38275	1	12752	12752		23.148	0	1		+		3109	8820	2158	2171	4024	4024					-0.014762727585548419
ERTSSSTI	8	Unmodified	_ERTSSSTI_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.72125244140625	2	440.722164	879.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.62	1	58.691	58.191	59.191	0.070477								0	0	0	0.38652	1	12801	12801		16.942	0	1		+		3110	8820	2158	2171	4025	4025					-0.014762727585548419
ERTSSSTI	8	Unmodified	_ERTSSSTI_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7211608886719	2	440.722164	879.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.51	1	59.582	59.082	60.082	0.072338								0	0	0	0.38652	1	13072	13072		16.942	0	1		+		3111	8820	2158	2171	4026	4026					-0.014762727585548419
ERTVVPGAA	9	Unmodified	_ERTVVPGAA_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.54888916015625	2	450.250892	898.48723	-0.14546	-6.5491E-05	-0.1198	-5.3938E-05	-0.26525	-0.00011943	450.25089382451614	32.926	0.31462	33.001	32.803	33.117	0.074322					17	12	2	0	0	0	0.25809	1	5073	5073		2.3027	0.24298	1	28496			3112	5605	2159	2172	4027	4027					0.03392614237657199
ERTYTNPAKM	10	Unmodified	_ERTYTNPAKM_					0	0	0			REV__tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	REV__tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.18817138671875	3	404.201012	1209.58121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.907	1	77.942	77.442	78.442	0.034485								0	0	0	0.33755	1	18667	18667		3.0723	0.63748	1		+		3113	13242	2160	2173	4028	4028					-0.015200347223753852
ERVGNKKV	8	Unmodified	_ERVGNKKV_					0	0	0		tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.2801208496094	2	465.279983	928.545414	0.083182	3.8703E-05	0.012095	5.6276E-06	0.095277	4.433E-05	465.27984246087146	83.57	0.88866	83.592	83.304	84.192	0.021744					60	31	3	0	0	0	0.53858	2	20362	20362;20480		2.3027	0	1	199730			3114	13741	2161	2174	4029;4030	4029					0.07828295882950442
ERVLRSIEQKL	11	Unmodified	_ERVLRSIEQKL_					0	0	0			REV__nc|ENSG00000178573|O75444|MAF	REV__nc|ENSG00000178573|O75444|MAF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.60809326171875	3	457.608659	1369.80415	0.23022	0.00010535	-0.8339	-0.0003816	-0.60368	-0.00027625	457.60826892319983	94.226	2.1515	94.265	93.255	95.407	0.038086					178	93	3	0	0	0	0.4167	1	23913	23913		0.50596	0	1	691320	+		3115	10456	2162	2175	4031	4031					0.1340378233435331
ERVLRSIEQKL	11	Unmodified	_ERVLRSIEQKL_					0	0	0			REV__nc|ENSG00000178573|O75444|MAF	REV__nc|ENSG00000178573|O75444|MAF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.60772705078125	3	457.608659	1369.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.192	1	93.229	92.729	93.729	0.037369								0	0	0	0.34068	1	23315	23315		0.50596	0	1		+		3116	10456	2162	2175	4032	4032					0.1340378233435331
ERWCQRML	8	Unmodified	_ERWCQRML_					0	0	0			REV__nc|ENSG00000120156|Q02763-3|TEK	REV__nc|ENSG00000120156|Q02763-3|TEK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2723999023438	2	561.270778	1120.527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.98	1	104.98	104.48	105.48	0								0	0	0	0.38822	1	27029	27029		2.0598	0	1		+		3117	8871	2163	2176	4033	4033					-0.028439053549163873
ESAGGLIQTAR	11	Unmodified	_ESAGGLIQTAR_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7964477539062	2	551.796195	1101.57784	0.36003	0.00019866	0.10256	5.6595E-05	0.4626	0.00025526	551.7962529847304	37.198	0.66469	37.198	37.01	37.675	0					58	24	3	0	0	0	0.0058552	1	6462	6462		87.123	53.021	1	300060			3118	2831	2164	2177	4034	4034					0.031110384952853565
ESAGGLIQTAR	11	Unmodified	_ESAGGLIQTAR_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2842407226562	2	551.796195	1101.57784	0.42942	0.00023695	0.18757	0.0001035	0.61699	0.00034045	551.79628409227	37.11	0.73732	37.194	36.947	37.684	0.084476					60	26	4	0	0	0	0.21447	1	6310	6310		51.765	30.018	1	249950			3119	2831	2164	2177	4035	4035					0.031110384952853565
ESALPSWKSV	10	Unmodified	_ESALPSWKSV_					0	0	0		nc|ENSG00000170011|Q8NFW9-5|MYRIP;nc|ENSG00000170011|Q8NFW9-4|MYRIP;nc|ENSG00000170011|Q8NFW9-3|MYRIP;nc|ENSG00000170011|Q8NFW9-6|MYRIP;nc|ENSG00000170011|Q8NFW9-2|MYRIP;ENSG00000170011|ENST00000302541|MYRIP;MYRIP|p.S404Rfs*2|1|0.41|ENSG00000170011|chr3:40190008-40190009|-/G|frameshift_variant	nc|ENSG00000170011|Q8NFW9-5|MYRIP	nc|ENSG00000170011|Q8NFW9-5|MYRIP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7766723632812	2	552.290214	1102.56587	0.84911	0.00046895	-0.10686	-5.9018E-05	0.74225	0.00040993	553.2916420182847	81.852	0.40401	81.852	81.632	82.036	0					23	13	3	0	0	0	0.31532	1	20012	20012		13.042	2.9685	1	95207			3120	4372	2165	2178	4036	4036					0.018694217520987877
ESAPEGQAQQR	11	Unmodified	_ESAPEGQAQQR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.7838745117188	2	600.783815	1199.55308	0.25257	0.00015174	-0.15644	-9.3984E-05	0.096129	5.7753E-05	600.7838324423774	17.768	0.29136	17.852	17.714	18.005	0.083696					80	36	3	0	0	0	0.3051	2	917	897;917		17.443	12.546	1	63326			3121	691	2166	2179	4037;4038	4038					-0.03871641378100321
ESAQDFASR	9	Unmodified	_ESAQDFASR_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|24|fusion;VMP1-RPS6KB1|1|fusion;ENSG00000062716|ENST00000262291|VMP1;RPS6KB1-VMP1|4|fusion;RPS6KB1-VMP1|12|fusion;RPS6KB1-VMP1|3|fusion;CLTC-VMP1|10|fusion;nc|ENSG00000062716|Q96GC9-2|VMP1	CLTC-VMP1|6|fusion	CLTC-VMP1|6|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7303466796875	2	505.73052	1009.44649	-0.23083	-0.00011674	0.42002	0.00021241	0.18918	9.5676E-05	505.7306220879504	28.505	0.55026	28.505	28.35	28.9	0					46	27	3	0	0	0	0.29334	1	3851	3851		7.609	2.3121	1	100380			3122	200	2167	2180	4039	4039					-0.05785771872615442
ESAQDFASR	9	Unmodified	_ESAQDFASR_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|24|fusion;VMP1-RPS6KB1|1|fusion;ENSG00000062716|ENST00000262291|VMP1;RPS6KB1-VMP1|4|fusion;RPS6KB1-VMP1|12|fusion;RPS6KB1-VMP1|3|fusion;CLTC-VMP1|10|fusion;nc|ENSG00000062716|Q96GC9-2|VMP1	CLTC-VMP1|6|fusion	CLTC-VMP1|6|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.73046875	2	505.73052	1009.44649	-0.17757	-8.9802E-05	0.45765	0.00023145	0.28009	0.00014165	505.73069937433337	28.386	0.49172	28.468	28.341	28.833	0.082134					54	28	3	0	0	0	0.31389	1	3703	3703		4.897	1.9018	1	90089			3123	200	2167	2180	4040	4040					-0.05785771872615442
ESASAGATLR	10	Unmodified	_ESASAGATLR_					0	0	0		ENSG00000120149|ENST00000239243|MSX2	ENSG00000120149|ENST00000239243|MSX2	ENSG00000120149|ENST00000239243|MSX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.74847412109375	2	481.748713	961.482873	-0.26788	-0.00012905	3.3525	0.001615	3.0846	0.001486	481.74891284534976	23.755	0.34144	23.855	23.685	24.026	0.099739					72	31	4	0	0	0	0.43771	1	2380	2380		7.1017	2.3457	1	65404			3124	2110	2168	2181	4041	4041					0.0005910502409278706
ESCLVDFLLC	10	Unmodified	_ESCLVDFLLC_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|313|3|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|313|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2656860351562	2	571.267035	1140.51952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.448	1	28.448	27.948	28.948	0								0	0	0	0.33892	1	3841	3841		1.4819	0.79152	1		+		3125	12675	2169	2182	4042	4042					-0.04512102465855605
ESCWDLSRQ	9	Unmodified	_ESCWDLSRQ_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.24365234375	2	562.24548	1122.47641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.83	1	101.87	101.37	102.37	0.042656								0	0	0	0.28724	1	25941	25941		1.6526	0	1				3126	1169	2170	2183	4043	4043					-0.07993156198949691
ESEEYLLC	8	Unmodified	_ESEEYLLC_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2132873535156	2	493.212783	984.411013	0.49706	0.00024516	1.649	0.00081331	2.1461	0.0010585	493.21352833660404	83.053	0.3512	83.053	82.9	83.251	0					18	11	2	0	0	0	0.53345	1	20403	20403		5.7604	0	1	82820			3127	5398	2171	2184	4044	4044					-0.08181570444639874
ESEEYLLC	8	Unmodified	_ESEEYLLC_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2144775390625	2	493.212783	984.411013	0.34166	0.00016851	2.0584	0.0010152	2.4001	0.0011838	493.21367737485343	83.116	0.31989	83.137	82.931	83.251	0.021744					17	10	2	0	0	0	0.53345	1	20242	20242		5.7604	0	1	55497			3128	5398	2171	2184	4045	4045					-0.08181570444639874
ESERNITIMA	10	Unmodified	_ESERNITIMA_					0	0	0		TNRC6A|p.P976Tfs*27|1|0.3|ENSG00000090905|chr16:24791565-24791566|-/T|frameshift_variant;nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A	TNRC6A|p.P976Tfs*27|1|0.3|ENSG00000090905|chr16:24791565-24791566|-/T|frameshift_variant	TNRC6A|p.P976Tfs*27|1|0.3|ENSG00000090905|chr16:24791565-24791566|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2903442382812	2	582.289888	1162.56522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.46	1	105.49	104.99	105.99	0.029739								0	0	0	0.33738	1	26987	26987		3.2813	0.78282	1				3129	1052	2172	2185	4046	4046					-0.00955740959261675
ESFKVGKNW	9	Unmodified	_ESFKVGKNW_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7853393554688	2	547.785099	1093.55564	0.21214	0.00011621	-0.12565	-6.8827E-05	0.086491	4.7378E-05	547.7849759266087	51.645	0.56877	51.645	51.475	52.043	0					35	19	3	0	0	0	0.10067	1	10824	10824		32.305	2.0807	1	186150			3130	5672	2173	2186	4047	4047					0.012608588175226032
ESFKVGKNW	9	Unmodified	_ESFKVGKNW_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.785888671875	2	547.785099	1093.55564	0.32713	0.0001792	-0.57323	-0.00031401	-0.2461	-0.00013481	547.7848217797135	51.599	0.46576	51.668	51.475	51.941	0.069878					35	16	3	0	0	0	0.20845	1	10660	10660		21.747	2.3076	1	161410			3131	5672	2173	2186	4048	4048					0.012608588175226032
ESFKVGKNW	9	Unmodified	_ESFKVGKNW_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	547.785099	1093.55564	0.21214	0.00011621	-0.12565	-6.8827E-05	0.086491	4.7378E-05	547.7849759266087	51.645	0.56877	51.645	51.475	52.043	0	-0.011575	0.00022234	NaN	32.305	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186150			3132	5672	2173	2186							0.012608588175226032
ESFYEFFITP	10	Unmodified	_ESFYEFFITP_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.29736328125	2	640.297704	1278.58086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.375	1	82.375	81.875	82.875	0								0	0	0	0.33877	1	20186	20186		1.6526	0	1				3133	3254	2174	2187	4049	4049					-0.04729131170574874
ESFYGIGTTR	10	Unmodified	_ESFYGIGTTR_					0	0	0		ENST00000274712.7_1_5:140080440-140083534:+|nuORF	ENST00000274712.7_1_5:140080440-140083534:+|nuORF	ENST00000274712.7_1_5:140080440-140083534:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7786865234375	2	565.77747	1129.54039	0.23031	0.0001303	-3.1331	-0.0017726	-2.9028	-0.0016423	565.7777824805462	48.125	0.40001	48.125	47.911	48.311	0					24	13	3	0	0	0	0.43771	2	9768	9731;9768		7.1017	1.8711	1	90262			3134	5921	2175	2188	4050;4051	4051					-0.019200527703333137
ESGGASVISTR	11	Unmodified	_ESGGASVISTR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2724609375	2	532.272552	1062.53055	-0.10403	-5.5372E-05	0.20418	0.00010868	0.10015	5.3307E-05	532.2725471555982	28.729	0.59171	28.729	28.529	29.12	0					75	29	4	0	0	0	0.16017	2	3906	3906;3944		36.395	16.769	1	252210			3135	1172	2176	2189	4052;4053	4052					0.0017875922426355828
ESGGASVISTR	11	Unmodified	_ESGGASVISTR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2725830078125	2	532.272552	1062.53055	0.021691	1.1546E-05	0.22564	0.0001201	0.24734	0.00013165	532.2726004946524	28.613	0.49984	28.695	28.512	29.012	0.082134					79	30	4	0	0	0	0.27523	2	3785	3740;3785		20.871	5.914	1	255670			3136	1172	2176	2189	4054;4055	4055					0.0017875922426355828
ESGPSIVHR	9	Unmodified	_ESGPSIVHR_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.25946044921875	2	491.259248	980.503943	-0.22902	-0.00011251	-0.20028	-9.839E-05	-0.4293	-0.0002109	491.2594703993397	23.919	3.2751	23.919	23.657	26.932	0					623	261	5	0	0	0	3.2353E-09	10	2559	2487;2524;2559;2592;2625;2660;2709;2745;2786;2823		171.09	103.01	1	3789000			3137	827;5239	2177	2190	4056;4057;4058;4059;4060;4061;4062;4063;4064;4065	4058					0.012911151236153273
ESGPSIVHR	9	Unmodified	_ESGPSIVHR_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.25946044921875	2	491.259248	980.503943	-0.024674	-1.2121E-05	-0.2905	-0.00014271	-0.31518	-0.00015483	491.25944100011304	23.734	2.802	23.833	23.526	26.328	0.099739					550	251	5	0	0	0	3.513E-06	10	2356	2319;2356;2388;2419;2453;2491;2534;2567;2613;2782		155.03	86.945	1	4289800			3138	827;5239	2177	2190	4066;4067;4068;4069;4070;4071;4072;4073;4074;4075	4067					0.012911151236153273
ESGQFPGVCW	10	Unmodified	_ESGQFPGVCW_					0	0	0		ENSG00000213928|ENST00000396864|IRF9;ENST00000561412.1_1_14:24630521-24631656:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF	ENSG00000213928|ENST00000396864|IRF9	ENSG00000213928|ENST00000396864|IRF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.239990234375	2	555.239667	1108.46478	0.31969	0.0001775	0.39221	0.00021777	0.7119	0.00039528	555.2398935426701	90.01	1.2228	90.044	89.77	90.992	0.034058					225	49	6	0	0	0	0.36006	1	22349	22349		16.149	0.30192	1	15697000			3139	5559	2178	2191	4076	4076					-0.0851135322227492
ESGQFPGVCW	10	Unmodified	_ESGQFPGVCW_					0	0	0		ENSG00000213928|ENST00000396864|IRF9;ENST00000561412.1_1_14:24630521-24631656:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF	ENSG00000213928|ENST00000396864|IRF9	ENSG00000213928|ENST00000396864|IRF9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	555.239667	1108.46478	0.31969	0.0001775	0.39221	0.00021777	0.7119	0.00039528	555.2398935426701	90.01	1.2228	90.044	89.77	90.992	0.034058	-0.012624	0.00012226	NaN	16.149	225	49	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15697000			3140	5559	2178	2191							-0.0851135322227492
ESHLLEPHEI	10	Unmodified	_ESHLLEPHEI_					0	0	0		nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3073120117188	2	602.303852	1202.59315	0.67199	0.00040474	1.8279	0.0011009	2.4998	0.0015057	602.3053080565046	83.447	1.5636	83.447	82.651	84.215	0					159	53	5	0	0	0	0.41688	1	20671	20671		10.074	1.9184	1	1695500			3141	7514	2179	2192	4077	4077					-4.0947075376607245E-05
ESIDPQFTIRR	11	Unmodified	_ESIDPQFTIRR_					0	0	0		ENSG00000136141|ENST00000389797|LRCH1;nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1	ENSG00000136141|ENST00000389797|LRCH1	ENSG00000136141|ENST00000389797|LRCH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.8799743652344	3	454.577247	1360.70991	-0.072563	-3.2985E-05	-0.90143	-0.00040977	-0.974	-0.00044276	454.57680645488	44.837	0.22412	44.837	44.717	44.942	0					10	7	2	0	0	0	0.311	1	8775	8775		0.50596	0.051438	1	22966			3142	2770	2180	2193	4078	4078					0.04398643512217859
ESIHNRQHLT	10	Unmodified	_ESIHNRQHLT_					0	0	0			REV__ENSG00000187187|ENST00000347077|ZNF546	REV__ENSG00000187187|ENST00000347077|ZNF546	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.2654418945312	2	617.817993	1233.62143	-0.42992	-0.00026561	-0.14155	-8.7451E-05	-0.57147	-0.00035306	617.8179463553217	33.352	0.32741	33.427	33.284	33.611	0.074322					21	12	2	0	0	0	0.31834	1	5152	5152		1.6526	0	1	34417	+		3143	10725	2181	2194	4079	4079					0.013966479924192754
ESKDEKVEI	9	Unmodified	_ESKDEKVEI_					0	0	0			REV__tr|U7SJ20|U7SJ20_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02065PE=4SV=1	REV__tr|U7SJ20|U7SJ20_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02065PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.284912109375	2	538.777136	1075.53972	0.23715	0.00012777	-2.5413	-0.0013692	-2.3042	-0.0012414	538.7756002484015	52.611	0.27069	52.611	52.458	52.729	0					16	9	2	0	0	0	0.20845	1	11139	11139		21.747	4.8044	1	74786	+		3144	13057	2182	2195	4080	4080					0.004971077899426746
ESLTLTNGEI	10	Unmodified	_ESLTLTNGEI_					0	0	0			REV__ENST00000361549.2_1_12:108912031-108913249:+|nuORF	REV__ENST00000361549.2_1_12:108912031-108913249:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2850341796875	2	538.777136	1075.53972	0.48413	0.00026084	-2.8545	-0.001538	-2.3704	-0.0012771	538.7755083303747	52.491	0.3593	52.558	52.412	52.772	0.067169					21	12	2	0	0	0	0.27491	1	10990	10990		30.637	5.2372	1	60925	+		3145	10920	2183	2196	4081	4081					0.004971077899426746
ESLVLLRRLL	10	Unmodified	_ESLVLLRRLL_					0	0	0		ENSG00000175229|ENST00000312006|GAL3ST3	ENSG00000175229|ENST00000312006|GAL3ST3	ENSG00000175229|ENST00000312006|GAL3ST3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7066040039062	2	606.395348	1210.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.24	1	114.26	113.76	114.76	0.013336								0	0	0	0.33984	1	29089	29089		0.40072	0	1				3146	4619	2184	2197	4082	4082					0.1791850414495002
ESNRRREV	8	Unmodified	_ESNRRREV_					0	0	0			REV__ENSG00000163362|ENST00000413687|INAVA	REV__ENSG00000163362|ENST00000413687|INAVA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7510986328125	2	523.278503	1044.54245	-0.13404	-7.014E-05	0.79052	0.00041366	0.65649	0.00034352	523.2781881668012	30.843	0.34258	30.843	30.682	31.024	0					27	16	3	0	0	0	0.3576	1	4553	4553		5.2307	0	1	19463	+		3147	9936	2185	2198	4083	4083					0.021964207581504525
ESNVEHLL	8	Unmodified	_ESNVEHLL_					0	0	0			REV__nc|ENSG00000121289|Q96ST8-3|CEP89	REV__nc|ENSG00000121289|Q96ST8-3|CEP89	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.3532409667969	2	470.740357	939.46616	-0.3481	-0.00016387	-0.50417	-0.00023733	-0.85228	-0.0004012	470.7399725465511	44.75	0.27726	44.75	44.554	44.831	0					11	9	2	0	0	0	0.3576	1	8689	8689		7.2892	2.5332	1	36518	+		3148	8896	2186	2199	4084	4084					-0.005993958618546458
ESPEVVFQL	9	Unmodified	_ESPEVVFQL_					0	0	0			REV__nc|ENSG00000145241|Q03188-2|CENPC	REV__nc|ENSG00000145241|Q03188-2|CENPC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2714233398438	2	524.27149	1046.52843	0.08828	4.6283E-05	0.46871	0.00024573	0.55699	0.00029202	524.2716744062744	71.94	0.91463	71.94	71.614	72.528	0					84	31	4	0	0	0	0.27332	1	17104	17104		10.074	0	1	4408400	+		3149	7756	2187	2200	4085	4085					0.007023304865015234
ESPEVVFQL	9	Unmodified	_ESPEVVFQL_					0	0	0			REV__nc|ENSG00000145241|Q03188-2|CENPC	REV__nc|ENSG00000145241|Q03188-2|CENPC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2715454101562	2	524.27149	1046.52843	0.053538	2.8068E-05	0.50831	0.00026649	0.56185	0.00029456	524.2716547324799	71.844	1.0707	71.9	71.623	72.694	0.055931					84	37	4	0	0	0	0.19398	1	16889	16889		19.257	0	1	3102800	+		3150	7756	2187	2200	4086	4086					0.007023304865015234
ESPNRHLYDF	10	Unmodified	_ESPNRHLYDF_					0	0	0		ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant;nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.3006591796875	2	639.299101	1276.58365	0.11098	7.0948E-05	3.1958	0.0020431	3.3068	0.002114	639.8029061330728	49.907	0.39789	49.907	49.707	50.105	0					15	13	2	0	0	0	0.47161	1	10297	10297		0.40072	0.050084	1	71282			3151	72	2188	2201	4087	4087					-0.043578629930379975
ESPNRHLYDF	10	Unmodified	_ESPNRHLYDF_					0	0	0		ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant;nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	639.299101	1276.58365	0.1534	9.8069E-05	3.2465	0.0020755	3.3999	0.0021736	639.3010007955294	49.776	0.26171	49.849	49.717	49.979	0.07312	-0.028828	1.8132E-05	NaN	0.40072	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58167			3152	72	2188	2201							-0.043578629930379975
ESPRPWQPH	9	Unmodified	_ESPRPWQPH_					0	0	0		ENST00000382888.3_1_4:1953834-1954747:+|nuORF	ENST00000382888.3_1_4:1953834-1954747:+|nuORF	ENST00000382888.3_1_4:1953834-1954747:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.279052734375	2	567.277972	1132.54139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.13	1	116.14	115.64	116.64	0.013062								0	0	0	0.28631	1	29485	29485		1.8442	0.19162	1				3153	6304	2189	2202	4088	4088					-0.01957793610790759
ESQSPDTTIQR	11	Unmodified	_ESQSPDTTIQR_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000513944.5_1_5:72144220-72147067:+|nuORF;ENST00000518279.5_1_5:72112751-72147067:+|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.3045654296875	2	631.304581	1260.59461	-0.31181	-0.00019685	0.38178	0.00024102	0.069968	4.4171E-05	631.3047453757132	26.748	0.46566	26.748	26.574	27.04	0					87	32	4	0	0	0	0.25864	1	3356	3356		22.775	13.231	1	146820			3154	931	2190	2203	4089	4089					-0.025265054094461448
ESQSPDTTIQR	11	Unmodified	_ESQSPDTTIQR_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000513944.5_1_5:72144220-72147067:+|nuORF;ENST00000518279.5_1_5:72112751-72147067:+|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.3045654296875	2	631.304581	1260.59461	-0.096509	-6.0927E-05	0.2093	0.00013213	0.1128	7.1208E-05	631.3046692099865	26.648	0.35862	26.735	26.591	26.949	0.0867					75	27	4	0	0	0	0.32676	2	3198	3198;3237		14.957	10.768	1	134950			3155	931	2190	2203	4090;4091	4090					-0.025265054094461448
ESQYRGDYDA	10	Unmodified	_ESQYRGDYDA_					0	0	0		ENST00000481106.5_1_X:80458072-80552723:+|nuORF;ENSG00000131171|ENST00000373212|SH3BGRL;ENST00000474113.1_1_X:80511064-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3136596679688	2	602.249274	1202.484	0.38513	0.00023194	-1.2118	-0.00072981	-0.82668	-0.00049787	602.2485962180461	73.376	0.549	73.428	73.152	73.701	0.052574					52	21	3	0	0	0	0.31811	1	17269	17269		2.9952	2.9952	1	1226600			3156	2516	2191	2204	4092	4092					-0.10914725397651637
ESRRKYQK	8	Unmodified	_ESRRKYQK_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2518920898438	2	547.806897	1093.59924	0.57807	0.00031667	-3.8346	-0.0021006	-3.2565	-0.0017839	548.3069468189689	99.147	0.28372	99.19	99.034	99.318	0.042839					20	18	2	0	0	0	0.3576	1	25100	25100		2.3027	0.4585	1	54867			3157	733	2192	2205	4093	4093					0.056184683146511816
ESRRLGFY	8	Unmodified	_ESRRLGFY_					0	0	0			REV__tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	REV__tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7152099609375	2	514.269616	1026.52468	-0.070163	-3.6082E-05	0.62416	0.00032099	0.554	0.00028491	514.269891303316	31.701	0.32777	31.701	31.492	31.82	0					20	13	2	0	0	0	0.3576	1	4788	4788		0.79363	0.79363	1	19919	+		3158	13117	2193	2206	4094	4094					0.012477055033059514
ESRSSQVSSED	11	Unmodified	_ESRSSQVSSED_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7612915039062	2	605.762746	1209.51094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.59	1	104.59	104.09	105.09	0								0	0	0	0.33503	1	26920	26920		2.4985	0	1		+		3159	9517	2194	2207	4095	4095					-0.08543661577118655
ESSAGGSFTVR	11	Unmodified	_ESSAGGSFTVR_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000436135.1_1_1:158493653-158493989:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2647094726562	2	549.264727	1096.5149	-0.046631	-2.5613E-05	0.28874	0.0001586	0.24211	0.00013298	549.2647996521965	31.901	0.58585	31.901	31.597	32.183	0					39	23	2	0	0	0	0.3103	1	4865	4865		8.4443	3.6883	1	110130			3160	1108;897	2195	2208	4096	4096					-0.029495272927533733
ESSAGGSFTVR	11	Unmodified	_ESSAGGSFTVR_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000436135.1_1_1:158493653-158493989:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2650146484375	2	549.264727	1096.5149	0.029342	1.6116E-05	0.36769	0.00020196	0.39703	0.00021807	549.2649478591168	31.858	0.5461	31.932	31.677	32.223	0.073782					53	24	3	0	0	0	0.33929	1	4740	4740		13.519	8.6217	1	75768			3161	1108;897	2195	2208	4097	4097					-0.029495272927533733
ESSGINITK	9	Unmodified	_ESSGINITK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7536926269531	2	474.753464	947.492375	-0.39043	-0.00018536	0.78908	0.00037462	0.39865	0.00018926	474.7538390309817	29.74	0.39325	29.74	29.588	29.981	0					32	19	2	0	0	0	0.30757	1	4226	4226		5.7319	1.4026	1	58362			3162	4596	2196	2209	4098	4098					0.016528733096151882
ESSGINITK	9	Unmodified	_ESSGINITK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	474.753464	947.492375	-0.38168	-0.0001812	0.66075	0.00031369	0.27907	0.00013249	474.7537748232882	29.696	0.39902	29.772	29.61	30.009	0.075403	0.015772	-6.08E-05	NaN	5.7319	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43236			3163	4596	2196	2209							0.016528733096151882
ESSSESFISR	10	Unmodified	_ESSSESFISR_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000575955.1_1_17:4120189-4167236:-|nuORF;ENST00000570934.5_1_17:4098183-4145738:-|nuORF;UBE2G1-ANKFY1|2|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7798461914062	2	564.762017	1127.50948	0.011171	6.309E-06	-0.097272	-5.4935E-05	-0.0861	-4.8626E-05	564.7617757778751	34.63	0.49688	34.63	34.478	34.975	0					33	18	3	0	0	0	0.31794	1	5658	5658		4.1895	1.1943	1	57408			3164	5039	2197	2210	4099	4099					-0.049172508752235444
ESSSESFISR	10	Unmodified	_ESSSESFISR_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000575955.1_1_17:4120189-4167236:-|nuORF;ENST00000570934.5_1_17:4098183-4145738:-|nuORF;UBE2G1-ANKFY1|2|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.76171875	2	564.762017	1127.50948	0.075352	4.2556E-05	-0.19451	-0.00010985	-0.11915	-6.7293E-05	564.7616170699433	34.584	0.39301	34.661	34.489	34.882	0.076244					30	17	2	0	0	0	0.45313	2	5556	5556;5560		4.1895	1.1943	1	46648			3165	5039	2197	2210	4100;4101	4100					-0.049172508752235444
ESSSPSPCTSL	11	Unmodified	_ESSSPSPCTSL_					0	0	0			REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF	REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.737060546875	2	547.737154	1093.45975	-0.073862	-4.0457E-05	-0.42132	-0.00023078	-0.49519	-0.00027123	547.7368799026807	43.702	0.79052	43.702	43.39	44.18	0					75	28	4	0	0	0	0.18341	1	8456	8456		32.786	4.2912	1	414790	+		3166	11536	2198	2211	4102	4102					-0.08323701875519873
ESSSPSPCTSL	11	Unmodified	_ESSSPSPCTSL_					0	0	0			REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF	REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7455444335938	2	547.737154	1093.45975	0.046024	2.5209E-05	-0.28761	-0.00015753	-0.24158	-0.00013232	547.7369999059772	43.645	0.73776	43.734	43.394	44.132	0.088921					74	26	4	0	0	0	0.38555	1	8366	8366		7.609	0.50723	1	316180	+		3167	11536	2198	2211	4103	4103					-0.08323701875519873
ESTGSIAKR	9	Unmodified	_ESTGSIAKR_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7586975097656	2	474.759081	947.503609	-0.64775	-0.00030753	0.0079467	3.7728E-06	-0.6398	-0.00030375	474.7590585659497	16.327	0.59116	16.327	16.194	16.785	0					169	75	4	0	0	0	0.034936	2	703	703;723		47.594	27.141	1	375130			3168	3421	2199	2212	4104;4105	4104					0.02775695403749978
ESTGSIAKR	9	Unmodified	_ESTGSIAKR_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	474.759081	947.503609	-0.067715	-3.2149E-05	-0.35679	-0.00016939	-0.42451	-0.00020154	474.75888067990854	16.319	0.27515	16.397	16.284	16.559	0.077806	0.034912	-0.00027743	NaN	47.594	76	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88925			3169	3421	2199	2212							0.02775695403749978
ESTLPGTVI	9	Unmodified	_ESTLPGTVI_					0	0	0		PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant;ENSG00000113205|ENST00000231130|PCDHB3	PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant	PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.7530517578125	2	458.752933	915.491313	0.16302	7.4787E-05	0.14358	6.587E-05	0.30661	0.00014066	458.7528906295175	58.355	0.47775	58.355	58.256	58.734	0					33	17	3	0	0	0	0.17247	2	12884	12835;12884		21.747	0	1	284300			3170	1790	2200	2213	4106;4107	4107					0.030186589407207975
ESTLPGTVI	9	Unmodified	_ESTLPGTVI_					0	0	0		PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant;ENSG00000113205|ENST00000231130|PCDHB3	PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant	PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.7527770996094	2	458.752933	915.491313	0.15312	7.0246E-05	0.3153	0.00014464	0.46842	0.00021489	458.7529797463093	57.971	1.0223	58.039	57.724	58.746	0.068371					95	37	4	0	0	0	0.25979	1	12722	12722		11.64	0	1	2833800			3171	1790	2200	2213	4108	4108					0.030186589407207975
ESTPITAVK	9	Unmodified	_ESTPITAVK_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2662048339844	2	473.266207	944.517862	-0.35572	-0.00016835	0.19639	9.2945E-05	-0.15933	-7.5404E-05	473.2661450368689	32.461	0.54128	32.461	32.215	32.756	0					60	25	3	0	0	0	0.22083	1	5029	5029		16.149	6.0752	1	139500			3172	4845	2201	2214	4109	4109					0.043383478320379254
ESTPITAVK	9	Unmodified	_ESTPITAVK_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2659912109375	2	473.266207	944.517862	-0.34425	-0.00016292	0.29822	0.00014114	-0.046023	-2.1781E-05	473.266185007163	32.405	0.4659	32.479	32.246	32.712	0.073784					63	25	3	0	0	0	0.22083	1	4888	4888		16.149	6.0752	1	105560			3173	4845	2201	2214	4110	4110					0.043383478320379254
ESVDPKNYPK	10	Unmodified	_ESVDPKNYPK_					0	0	0		ENSG00000125538|ENST00000263341|IL1B;ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENSG00000125538|ENST00000263341|IL1B	ENSG00000125538|ENST00000263341|IL1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7982788085938	2	588.798403	1175.58225	0.1656	9.7504E-05	0.32162	0.00018937	0.48721	0.00028687	588.7984952263242	25.758	0.37929	25.85	25.664	26.043	0.091507					73	30	3	0	0	0	0.38912	1	2947	2947		13.042	5.1323	1	52211			3174	2297	2202	2215	4111	4111					0.0014850291818220285
ESVHDEVCI	9	Unmodified	_ESVHDEVCI_					0	0	0			REV__ENST00000463037.5_1_1:162762392-162766419:+|nuORF	REV__ENST00000463037.5_1_1:162762392-162766419:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2767944335938	2	515.729132	1029.44371	0.18882	9.738E-05	-0.22464	-0.00011585	-0.035817	-1.8472E-05	515.7290267678816	35.431	0.46882	35.51	35.322	35.791	0.078827					27	17	2	0	0	0	0.24635	1	5849	5849		10.824	5.0635	1	54062	+		3175	11971	2203	2216	4112	4112					-0.0698336332177405
ESVVYLYIF	9	Unmodified	_ESVVYLYIF_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3299560546875	2	566.799883	1131.58521	0.2657	0.0001506	-0.78563	-0.0004453	-0.51993	-0.00029469	566.7994052683878	84.211	1.2784	84.233	83.043	84.321	0.021744					105	45	3	0	0	0	0.18479	1	20530	20530		20.454	0	1	335540	+		3176	9481	2204	2217	4113	4113					0.024683780429768376
ESYAYNED	8	Unmodified	_ESYAYNED_					0	0	0		ENSG00000183185|ENST00000472788|GABRR3	ENSG00000183185|ENST00000472788|GABRR3	ENSG00000183185|ENST00000472788|GABRR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.6877136230469	2	495.687987	989.361421	0.75015	0.00037184	-0.89062	-0.00044147	-0.14047	-6.9627E-05	495.6873967249885	83.798	0.54644	83.798	83.608	84.154	0					33	18	3	0	0	0	0.54097	1	20632	20632		0.69038	0.69038	1	242080			3177	4912	2205	2218	4114	4114					-0.13368562129096517
ETAMSFVAR	9	Unmodified	_ETAMSFVAR_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2493896484375	2	506.250034	1010.48552	-0.032088	-1.6245E-05	-1.8888	-0.00095619	-1.9209	-0.00097243	506.2490069048946	44.565	0.40054	44.653	44.479	44.879	0.08754					30	14	3	0	0	0	0.24021	1	8567	8567		13.906	1.6654	1	66667			3178	3892	2206	2219	4115	4115					-0.01930762842596323
ETCRWSFIL	9	Unmodified	_ETCRWSFIL_					0	0	0			REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7867431640625	2	577.786784	1153.55902	0.26538	0.00015333	0.48834	0.00028216	0.75372	0.00043549	577.7869399491609	59.985	1.0863	60.057	59.852	60.939	0.072342					72	38	3	0	0	0	0.26684	1	13183	13183		10.824	0	1	397060	+		3179	8959	2207	2220	4116	4116					-0.011622144001194101
ETDAVPHH	8	Unmodified	_ETDAVPHH_					0	0	0			REV__ENST00000510079.2_1_4:79102321-79102666:-|nuORF	REV__ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2093200683594	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.348	1	83.369	82.869	83.869	0.021744								0	0	0	0.38822	1	20321	20321		0.79363	0	1		+		3180	9444	2208	2221	4117	4117					-0.05213122210193433
ETDLVPVQI	9	Unmodified	_ETDLVPVQI_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2792663574219	2	507.279315	1012.54408	0.48771	0.00024741	-0.32206	-0.00016338	0.16565	8.4031E-05	507.2790708584896	70.315	1.6323	70.376	69.996	71.628	0.060562					152	64	3	0	0	0	0.18364	1	16564	16564		20.454	0	1	1077900	+		3181	8846	2209	2222	4118	4118					0.03830617003529824
ETFSVPGFYL	10	Unmodified	_ETFSVPGFYL_					0	0	0		ACTRT1|p.C150Vfs*63|1|0.05|ENSG00000123165|chrX:128051760-128051760|G/-|frameshift_variant;ENSG00000123165|ENST00000371124|ACTRT1	ACTRT1|p.C150Vfs*63|1|0.05|ENSG00000123165|chrX:128051760-128051760|G/-|frameshift_variant	ACTRT1|p.C150Vfs*63|1|0.05|ENSG00000123165|chrX:128051760-128051760|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.8164672851562	2	580.28714	1158.55973	0.39939	0.00023176	-0.37052	-0.00021501	0.02887	1.6753E-05	580.2867247511024	77.452	0.35387	77.452	77.28	77.634	0					30	17	2	0	0	0	0.31496	1	18720	18720		13.906	0.86358	1	401290			3182	9	2210	2223	4119	4119					-0.01321096479409789
ETGAGKHVPR	10	Unmodified	_ETGAGKHVPR_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000475683.1_1_2:220116706-220118580:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2862548828125	2	526.285797	1050.55704	0.11733	6.1748E-05	-0.47897	-0.00025208	-0.36164	-0.00019033	526.2854116680576	15.503	0.16728	15.575	15.493	15.66	0.0724					30	21	2	0	0	0	0.45945	1	504	504		2.9952	0.10602	1	19003			3183	2217	2211	2224	4120	4120					0.03378492906290376
ETGGVGDVSR	10	Unmodified	_ETGGVGDVSR_					0	0	0		ENST00000376901.8_1_11:66056515-66056632:-|nuORF	ENST00000376901.8_1_11:66056515-66056632:-|nuORF	ENST00000376901.8_1_11:66056515-66056632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7388000488281	2	488.738345	975.462138	-0.33935	-0.00016586	0.82541	0.00040341	0.48605	0.00023755	488.73881299627993	23.859	0.47771	23.859	23.709	24.187	0					84	41	3	0	0	0	0.44938	2	2552	2509;2552		4.897	0	1	65019			3184	6249	2212	2225	4121;4122	4122					-0.026574853555530353
ETGGVGDVSR	10	Unmodified	_ETGGVGDVSR_					0	0	0		ENST00000376901.8_1_11:66056515-66056632:-|nuORF	ENST00000376901.8_1_11:66056515-66056632:-|nuORF	ENST00000376901.8_1_11:66056515-66056632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7386474609375	2	488.738345	975.462138	-0.11549	-5.6442E-05	0.60894	0.00029761	0.49345	0.00024117	488.7387580008196	23.633	0.38929	23.733	23.617	24.006	0.099739					70	35	3	0	0	0	0.39071	1	2349	2349		12.873	4.7171	1	45744			3185	6249	2212	2225	4123	4123					-0.026574853555530353
ETGKNGGFGR	10	Unmodified	_ETGKNGGFGR_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7542724609375	2	511.75433	1021.49411	-0.38098	-0.00019497	0.29471	0.00015082	-0.086267	-4.4147E-05	511.75463692421	16.855	0.23724	16.855	16.752	16.989	0					46	28	2	0	0	0	0.46746	1	801	801		1.4819	0.68827	1	25769			3186	3892	2213	2226	4124	4124					-0.015780728817503586
ETGYVVER	8	Unmodified	_ETGYVVER_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.739990234375	2	476.740357	951.46616	-0.39368	-0.00018768	0.41306	0.00019692	0.019372	9.2354E-06	476.7404583541759	29.544	0.39533	29.544	29.362	29.758	0					42	21	3	0	0	0	0.53666	1	4159	4159		3.5965	1.2938	1	54338			3187	498	2214	2227	4125	4125					-0.011513958618479592
ETGYVVER	8	Unmodified	_ETGYVVER_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7400207519531	2	476.740357	951.46616	-0.3801	-0.00018121	0.57245	0.00027291	0.19235	9.1702E-05	476.7404578888664	29.494	0.40212	29.572	29.311	29.713	0.078287					34	22	2	0	0	0	0.53279	2	3994	3994;4058		6.2058	2.2614	1	40498			3188	498	2214	2227	4126;4127	4126					-0.011513958618479592
ETHFDSTQT	9	Unmodified	_ETHFDSTQT_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7;UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.227783203125	2	533.22781	1064.44107	0.47903	0.00025543	-1.6119	-0.00085953	-1.1329	-0.0006041	533.2268629259703	88.019	0.3996	88.049	87.851	88.251	0.030037					20	13	2	0	0	0	0.31496	1	21770	21770		4.756	1.1595	1	74961			3189	3968	2215	2228	4128	4128					-0.08857495455094977
ETHFDSTQT	9	Unmodified	_ETHFDSTQT_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7;UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	533.22781	1064.44107	0.5644	0.00030095	-2.4072	-0.0012836	-1.8428	-0.00098265	533.7280103168865	88.089	0.25573	88.089	87.948	88.204	0	0.020125	-0.00035623	NaN	4.756	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117730			3190	3968	2215	2228							-0.08857495455094977
ETIAFYPILM	10	Unmodified	_ETIAFYPILM_					0	0	0		tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3153076171875	2	599.314843	1196.61513	0.28253	0.00016932	0.14593	8.7456E-05	0.42845	0.00025678	599.3149189049465	95.689	0.62628	95.689	95.56	96.187	0					71	31	3	0	0	0	0.43672	1	24262	24262		7.2892	0.56607	1	203690			3191	13659	2216	2229	4129	4129					0.024689937166613163
ETIGEILKK	9	Unmodified	_ETIGEILKK_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant;nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8107299804688	2	515.810782	1029.60701	-0.088338	-4.5566E-05	0.13821	7.1289E-05	0.049871	2.5724E-05	515.8107732595134	40.095	0.92761	40.095	39.894	40.822	0					71	32	4	0	0	0	0.15837	1	7302	7302		34.932	13.395	1	275110			3192	4058	2217	2230	4130	4130					0.09339182791586609
ETIGEILKK	9	Unmodified	_ETIGEILKK_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant;nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8107299804688	2	515.810782	1029.60701	0.025448	1.3126E-05	0.18649	9.6196E-05	0.21194	0.00010932	515.8107687244086	39.995	0.57529	40.083	39.882	40.457	0.088562					51	21	3	0	0	0	0.21599	1	7150	7150		22.658	7.4096	1	231460			3193	4058	2217	2230	4131	4131					0.09339182791586609
ETIGKKFEK	9	Unmodified	_ETIGKKFEK_					0	0	0		XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant;ENSG00000079246|ENST00000392132|XRCC5	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3082275390625	2	540.308406	1078.60226	0.24544	0.00013261	-0.28021	-0.0001514	-0.034771	-1.8787E-05	540.3081256573843	20.101	0.3851	20.196	20.059	20.445	0.095234					96	40	3	0	0	0	0.30757	1	1419	1419		5.7319	1.7875	1	104890			3194	879	2218	2231	4132	4132					0.06610298648797652
ETIHADSVAKR	11	Unmodified	_ETIHADSVAKR_					0	0	0		ENST00000473663.1_1_16:1989075-1991398:-|nuORF;ENSG00000198736|ENST00000361871|MSRB1;ENST00000361871.7_2_16:1990815-1993322:-|nuORF	ENST00000473663.1_1_16:1989075-1991398:-|nuORF	ENST00000473663.1_1_16:1989075-1991398:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.55450439453125	3	409.554443	1225.6415	-0.09475	-3.8805E-05	-0.11155	-4.5685E-05	-0.2063	-8.4491E-05	409.5543805388791	20.609	0.33826	20.709	20.618	20.956	0.099499					63	37	3	0	0	0	0.40978	1	1552	1552		2.084	1.3074	1	28391			3195	5395	2219	2232	4133	4133					0.03770398932351782
ETILASSGTDR	11	Unmodified	_ETILASSGTDR_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.2910766601562	2	575.290942	1148.56733	-0.076701	-4.4125E-05	1.1177	0.00064302	1.041	0.0005989	575.2913774069185	33.227	0.4114	33.227	33.08	33.491	0					38	15	3	0	0	0	0.40319	1	5293	5293		3.5871	1.5011	1	70141			3196	1292;3833	2220	2233	4134	4134					-0.0010098894981638296
ETILASSGTDR	11	Unmodified	_ETILASSGTDR_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.290771484375	2	575.290942	1148.56733	-0.020492	-1.1789E-05	0.63357	0.00036449	0.61308	0.0003527	575.2911540612879	33.176	0.38153	33.251	33.066	33.447	0.074322					29	15	3	0	0	0	0.22106	1	5125	5125		27.088	19.799	1	57612			3197	1292;3833	2220	2233	4135	4135					-0.0010098894981638296
ETILTPLLT	9	Unmodified	_ETILTPLLT_					0	0	0		ENST00000439492.1_1_22:24269897-24270236:+|nuORF	ENST00000439492.1_1_22:24269897-24270236:+|nuORF	ENST00000439492.1_1_22:24269897-24270236:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7896423339844	2	500.799883	999.585213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.577	1	87.607	87.107	88.107	0.030037								0	0	0	0.27427	1	21608	21608		4.3292	0	1				3198	6518	2221	2234	4136	4136					0.08540378042994234
ETIPLTAEKL	10	Unmodified	_ETIPLTAEKL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2421875	2	557.821347	1113.62814	0.78803	0.00043958	-0.60567	-0.00033786	0.18235	0.00010172	557.8208446063826	54.937	0.43665	55.003	54.779	55.216	0.065128					40	17	3	0	0	0	0.31466	1	11688	11688		12.175	2.7916	1	286160			3199	110	2222	2235	4137	4137					0.07587148100424201
ETISSKNIISR	11	Unmodified	_ETISSKNIISR_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5697937011719	3	416.569981	1246.68811	0.10828	4.5107E-05	-0.66839	-0.00027843	-0.56011	-0.00023333	416.56979731338635	33.13	0.84662	33.13	32.781	33.628	0					69	32	3	0	0	0	0.39127	2	5205	5205;5246		6.3051	4.3776	1	205310			3200	4766	2223	2236	4138;4139	4138					0.07463838763669628
ETISSKNIISR	11	Unmodified	_ETISSKNIISR_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.351318359375	2	624.351334	1246.68811	-0.34667	-0.00021645	0.60837	0.00037984	0.2617	0.00016339	624.3515160198119	33.12	0.34375	33.12	32.985	33.328	0					23	13	2	0	0	0	0.41522	1	5230	5230		2.086	0	1	32350			3201	4766	2223	2236	4140	4140					0.07463838763669628
ETISSKNIISR	11	Unmodified	_ETISSKNIISR_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.5697937011719	3	416.569981	1246.68811	-0.20099	-8.3727E-05	-0.35223	-0.00014673	-0.55322	-0.00023045	416.569876874328	33.081	0.7806	33.155	32.937	33.718	0.074322					59	30	3	0	0	0	0.37405	1	5080	5080		9.5301	6.6868	1	154760			3202	4766	2223	2236	4141	4141					0.07463838763669628
ETISSKNIISR	11	Unmodified	_ETISSKNIISR_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.3514404296875	2	624.351334	1246.68811	-0.13169	-8.2219E-05	0.51838	0.00032365	0.3867	0.00024143	624.3514500755143	33.126	0.28989	33.201	33.017	33.307	0.074322					17	11	2	0	0	0	0.41047	1	5090	5090		2.086	0.89267	1	31480			3203	4766	2223	2236	4142	4142					0.07463838763669628
ETITESAGR	9	Unmodified	_ETITESAGR_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2400817871094	2	482.240721	962.466889	-0.49631	-0.00023934	0.45329	0.00021859	-0.043022	-2.0747E-05	482.2408867762019	23.864	0.4652	23.864	23.709	24.174	0					77	40	3	0	0	0	0.28919	2	2500	2500;2510		8.1555	4.2111	1	51297			3204	3137	2224	2237	4143;4144	4143					-0.015846012128008624
ETITESAGR	9	Unmodified	_ETITESAGR_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2544250488281	2	482.240721	962.466889	-0.26351	-0.00012707	0.37426	0.00018048	0.11075	5.3409E-05	482.24075703901497	23.637	0.32021	23.737	23.608	23.928	0.099739					60	28	3	0	0	0	0.26104	3	2371	2327;2364;2371		11.495	4.7715	1	53164			3205	3137	2224	2237	4145;4146;4147	4147					-0.015846012128008624
ETMHEVLATCP	11	Unmodified	_ETMHEVLATCP_					0	0	0			REV__ENSG00000104976|ENST00000221573|SNAPC2	REV__ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.85467529296875	3	410.854625	1229.54204	-0.24659	-0.00010131	0.45633	0.00018749	0.20974	8.6172E-05	410.8548121108218	32.169	0.51543	32.243	32.105	32.621	0.07378					53	26	4	0	0	0	0.38806	1	4806	4806		7.0371	4.1938	1	41464	+		3206	8523	2225	2238	4148	4148					-0.06354503068223494
ETMHEVLATCP	11	Unmodified	_ETMHEVLATCP_					0	0	0			REV__ENSG00000104976|ENST00000221573|SNAPC2	REV__ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	410.854625	1229.54204	0.086566	3.5566E-05	0.017916	7.3609E-06	0.10448	4.2927E-05	410.8545918040299	32.279	0.45823	32.279	32.028	32.487	0	0.018274	-0.00036157	NaN	7.0371	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42792	+		3207	8523	2225	2238							-0.06354503068223494
ETMHEVLATCP	11	Unmodified	_ETMHEVLATCP_					0	0	0			REV__ENSG00000104976|ENST00000221573|SNAPC2	REV__ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	410.854625	1229.54204	-0.24659	-0.00010131	0.45633	0.00018749	0.20974	8.6172E-05	410.8548121108218	32.169	0.51543	32.243	32.105	32.621	0.07378	-0.018274	0.0001788	NaN	7.0371	53	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41464	+		3208	8523	2225	2238							-0.06354503068223494
ETNFIEDIE	9	Unmodified	_ETNFIEDIE_					0	0	0			REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2553100585938	2	555.253494	1108.49243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.742	1	19.742	19.242	20.242	0								0	0	0	0.28631	1	1427	1427		1.8442	0.36234	1		+		3209	10279	2226	2239	4149	4149					-0.05747171481039004
ETNTGEVYR	9	Unmodified	_ETNTGEVYR_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.751708984375	2	534.751453	1067.48835	-0.16002	-8.5573E-05	0.20951	0.00011203	0.049482	2.6461E-05	534.751584392756	24.345	0.48088	24.345	24.205	24.686	0					86	41	3	0	0	0	0.30757	1	2651	2651		5.7319	2.7366	1	57767			3210	1149	2227	2240	4150	4150					-0.042692161840932386
ETNTGEVYR	9	Unmodified	_ETNTGEVYR_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	534.751453	1067.48835	0.21305	0.00011393	-0.054081	-2.892E-05	0.15897	8.501E-05	534.7514076510308	24.152	0.39391	24.252	24.098	24.492	0.099739	-0.04651	-0.00016057	NaN	5.7319	85	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55663			3211	1149	2227	2240							-0.042692161840932386
ETNYGIPQR	9	Unmodified	_ETNYGIPQR_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.27001953125	2	539.269813	1076.52507	0.15795	8.5177E-05	0.16891	9.1087E-05	0.32686	0.00017626	539.2698361091922	35.399	0.68785	35.399	35.205	35.892	0					54	25	4	0	0	0	0.098463	3	5918	5910;5918;5955		32.786	20.444	1	169130			3212	5487	2228	2241	4151;4152;4153	4152					-0.010129195675290248
ETNYGIPQR	9	Unmodified	_ETNYGIPQR_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2698974609375	2	539.269813	1076.52507	0.302	0.00016286	0.0068962	3.7189E-06	0.30889	0.00016658	539.2697625296319	35.367	0.6181	35.446	35.226	35.844	0.078831					41	23	3	0	0	0	0.12214	2	5770	5770;5797		27.629	19.719	1	137620			3213	5487	2228	2241	4154;4155	4154					-0.010129195675290248
ETPGAPVRR	9	Unmodified	_ETPGAPVRR_					0	0	0		ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.77484130859375	2	491.775065	981.535577	0.10434	5.1314E-05	-0.47206	-0.00023215	-0.36772	-0.00018084	491.7747605079647	20.243	0.34909	20.342	20.216	20.565	0.099499					72	37	3	0	0	0	0.29576	1	1472	1472		7.2892	2.96	1	64810			3214	477	2229	2242	4156	4156					0.044071078775687056
ETPGAPVRR	9	Unmodified	_ETPGAPVRR_					0	0	0		ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	491.775065	981.535577	-0.28788	-0.00014157	-0.042343	-2.0823E-05	-0.33022	-0.0001624	491.77502320764467	20.368	0.39123	20.368	20.247	20.638	0	0.013104	0.00014364	NaN	7.2892	78	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52383			3215	477	2229	2242							0.044071078775687056
ETPLPLLPSIW	11	Unmodified	_ETPLPLLPSIW_					0	0	0			REV__ENST00000491251.1_1_22:30421752-30421800:+|nuORF	REV__ENST00000491251.1_1_22:30421752-30421800:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.371337890625	2	633.360639	1264.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.521	1	90.521	90.021	91.021	0								0	0	0	0.31731	1	22662	22662		8.7454	0.58988	1		+		3216	12149	2230	2243	4157	4157					0.08496000405534687
ETPLTIVDF	9	Unmodified	_ETPLTIVDF_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.8179931640625	2	517.773865	1033.53318	0.46311	0.00023979	-0.15173	-7.8561E-05	0.31139	0.00016123	517.7739763039956	101.26	0.34435	101.3	101.12	101.46	0.042656					31	19	2	0	0	0	0.25281	1	25790	25790		6.7232	2.3939	1	59690	+		3217	10792	2231	2244	4158	4158					0.017752146292423276
ETPPRWTE	8	Unmodified	_ETPPRWTE_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5	ENSG00000183054|ENST00000329516|RGPD6	ENSG00000183054|ENST00000329516|RGPD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.26287841796875	2	508.245806	1014.47706	0.20361	0.00010348	-0.2631	-0.00013372	-0.05949	-3.0235E-05	508.2455029985629	37.168	0.55171	37.168	36.942	37.494	0					42	21	3	0	0	0	0.53118	1	6399	6399		7.2892	0	1	70900			3218	460	2232	2245	4159	4159					-0.029599934875705003
ETPQVAVIVR	10	Unmodified	_ETPQVAVIVR_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000493299.1_1_3:184038318-184039070:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.3272094726562	2	556.327131	1110.63971	0.52535	0.00029227	-0.14376	-7.998E-05	0.38159	0.00021229	556.3269814671307	47.734	0.42955	47.734	47.557	47.986	0					35	14	3	0	0	0	0.029684	2	9620	9620;9670		63.227	22.988	1	302110			3219	1862	2233	2246	4160;4161	4160					0.08881389914427018
ETPQVAVIVR	10	Unmodified	_ETPQVAVIVR_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000493299.1_1_3:184038318-184039070:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3273315429688	2	556.327131	1110.63971	0.77708	0.00043231	-0.39988	-0.00022246	0.3772	0.00020985	556.3267215556558	47.629	0.47348	47.709	47.531	48.004	0.080029					35	18	3	0	0	0	0.051426	2	9456	9456;9504		57.249	17.01	1	240880			3220	1862	2233	2246	4162;4163	4162					0.08881389914427018
ETQATVIYNTK	11	Unmodified	_ETQATVIYNTK_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3304443359375	2	634.330067	1266.64558	0.095512	6.0586E-05	0.31904	0.00020238	0.41455	0.00026296	634.831921548714	35.09	0.26445	35.169	35.058	35.322	0.078831					17	10	2	0	0	0	0.40977	1	5736	5736		2.086	0.43339	1	39196			3221	1213	2234	2247	4164	4164					0.022924436354060163
ETQGQQPPQR	10	Unmodified	_ETQGQQPPQR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1;ENST00000442962.2_1_9:112295731-112296019:-|nuORF;ENST00000444752.1_1_9:35971343-35971724:-|nuORF	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7890014648438	2	584.788901	1167.56325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.093	1	17.093	16.593	17.593	0								0	0	0	0.33035	1	855	855		11.495	3.8858	1				3222	691	2235	2248	4165	4165					-0.013830336528599219
ETQLPVSFR	9	Unmodified	_ETQLPVSFR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.790283203125	2	538.790381	1075.56621	0.22018	0.00011863	-0.20581	-0.00011089	0.014365	7.7395E-06	538.7904112924591	51.791	0.4782	51.791	51.596	52.075	0					49	16	4	0	0	0	0.20966	1	10852	10852		17.443	4.4002	1	220900			3223	3192	2236	2249	4166	4166					0.03144841471953441
ETQLPVSFR	9	Unmodified	_ETQLPVSFR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7903442382812	2	538.790381	1075.56621	0.44298	0.00023867	0.22143	0.0001193	0.66441	0.00035798	538.7903290340179	51.753	0.39521	51.823	51.634	52.03	0.069813					23	13	2	0	0	0	0.1646	1	10697	10697		22.658	4.5117	1	214190			3224	3192	2236	2249	4167	4167					0.03144841471953441
ETQLWSWDLAT	11	Unmodified	_ETQLWSWDLAT_					0	0	0			REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.549072265625	3	450.550587	1348.62993	-0.22371	-0.00010079	-2.9783	-0.0013419	-3.202	-0.0014427	450.5493366865671	28.239	0.25661	28.322	28.256	28.512	0.082134					23	15	2	0	0	0	0.41693	1	3660	3660		0.45452	0.087843	1	32886	+		3225	8505	2237	2250	4168	4168					-0.030438428816069063
ETRAEFAER	9	Unmodified	_ETRAEFAER_					0	0	0		ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-3|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-2|TPM1;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF	ENSG00000198467|ENST00000645482|TPM2	ENSG00000198467|ENST00000645482|TPM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7716064453125	2	554.772719	1107.53089	-0.1106	-6.1359E-05	-0.32152	-0.00017837	-0.43212	-0.00023973	554.7724942836852	22.618	0.59822	22.618	22.324	22.922	0					88	48	3	0	0	0	0.31389	2	2162	2162;2195		4.897	2.8373	1	43323		+	3226	233	2238	2251	4169;4170	4169					-0.01857821055864406
ETRAEFAER	9	Unmodified	_ETRAEFAER_					0	0	0		ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-3|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-2|TPM1;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF	ENSG00000198467|ENST00000645482|TPM2	ENSG00000198467|ENST00000645482|TPM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7730102539062	2	554.772719	1107.53089	0.27126	0.00015049	-0.49563	-0.00027496	-0.22437	-0.00012447	554.7724338140471	22.419	0.31987	22.52	22.404	22.724	0.10178					69	30	3	0	0	0	0.29334	2	2040	2008;2040		7.609	3.2797	1	38979		+	3227	233	2238	2251	4171;4172	4172					-0.01857821055864406
ETREWLMQ	8	Unmodified	_ETREWLMQ_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-2|CEP170	REV__nc|ENSG00000143702|Q5SW79-2|CEP170	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8010864257812	2	546.760766	1091.50698	0.371	0.00020285	-2.3479	-0.0012837	-1.9769	-0.0010809	546.7589420670664	62.106	0.46493	62.106	61.956	62.421	0					23	16	2	0	0	0	0.35759	1	14095	14095		12.532	0	1	105570	+		3228	9473	2239	2252	4173	4173					-0.035113778139020724
ETRNQQLI	8	Unmodified	_ETRNQQLI_					0	0	0			REV__ENST00000545177.4_1_6:2855402-2855693:-|nuORF	REV__ENST00000545177.4_1_6:2855402-2855693:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.791015625	2	501.272355	1000.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.691	1	84.714	84.214	85.214	0.023125								0	0	0	0.38822	1	20730	20730		10.074	0.72649	1		+		3229	12413	2240	2253	4174	4174					0.02991384295091848
ETSMEMME	8	Unmodified	_ETSMEMME_					0	0	0			REV__ZNF526|p.D128Vfs*41|1|0.27|ENSG00000167625|chr19:42224786-42224786|A/-|frameshift_variant	REV__ZNF526|p.D128Vfs*41|1|0.27|ENSG00000167625|chr19:42224786-42224786|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.77471923828125	2	494.177029	986.339505	0.44968	0.00022222	0.65256	0.00032248	1.1022	0.0005447	494.17726026587496	47.951	0.42432	47.951	47.735	48.159	0					29	14	3	0	0	0	0.3576	1	9702	9702		0.69038	0	1	162280	+		3230	10123	2241	2254	4175	4175					-0.15421149465157669
ETSPLTAEK	9	Unmodified	_ETSPLTAEK_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2533874511719	2	488.253297	974.492041	-0.27723	-0.00013536	0.1149	5.6101E-05	-0.16233	-7.9257E-05	488.25331703663807	27.918	0.54821	27.918	27.592	28.14	0					83	35	3	0	0	0	0.32831	1	3622	3622		2.9952	1.151	1	104250			3231	2054	2242	2255	4176	4176					0.0037745358976053467
ETSPLTAEK	9	Unmodified	_ETSPLTAEK_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2533264160156	2	488.253297	974.492041	-0.25796	-0.00012595	0.26843	0.00013106	0.010475	5.1142E-06	488.25337289075424	27.768	0.52532	27.85	27.582	28.107	0.082134					72	33	3	0	0	0	0.31389	1	3449	3449		4.897	1.6157	1	75686			3232	2054	2242	2255	4177	4177					0.0037745358976053467
ETSPLTAEK	9	Unmodified	_ETSPLTAEK_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	488.253297	974.492041	-0.27723	-0.00013536	0.1149	5.6101E-05	-0.16233	-7.9257E-05	488.25331703663807	27.918	0.54821	27.918	27.592	28.14	0	0.033962	-8.3518E-05	NaN	4.897	83	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104250			3233	2054	2242	2255							0.0037745358976053467
ETSPLTAEKL	10	Unmodified	_ETSPLTAEKL_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.795166015625	2	544.795329	1087.5761	-0.20271	-0.00011044	0.56502	0.00030782	0.36231	0.00019738	544.795454592175	45.406	0.65771	45.406	45.151	45.808	0					51	17	4	0	0	0	0.00018049	3	8951	8908;8951;8997		100.71	27.741	1	484830			3234	2054	2243	2256	4178;4179;4180	4179					0.03581984686661599
ETSPLTAEKL	10	Unmodified	_ETSPLTAEKL_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.79541015625	2	544.795329	1087.5761	0.068904	3.7539E-05	0.48048	0.00026176	0.54938	0.0002993	544.7954044901916	45.353	0.68749	45.44	45.148	45.836	0.08754					51	19	4	0	0	0	0.037458	2	8791	8744;8791		61.09	19.134	1	389150			3235	2054	2243	2256	4181;4182	4182					0.03581984686661599
ETTNLIHR	8	Unmodified	_ETTNLIHR_					0	0	0			REV__ENSG00000116213|ENST00000270708|WRAP73	REV__ENSG00000116213|ENST00000270708|WRAP73	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.26715087890625	2	492.267073	982.519593	-0.14301	-7.0399E-05	0.14972	7.3701E-05	0.0067077	3.302E-06	492.2671556426027	26.282	0.27908	26.282	26.139	26.418	0					41	24	2	0	0	0	0.53118	1	3226	3226		7.2892	0.56607	1	28838	+		3236	8807	2244	2257	4183	4183					0.02763401640675056
ETTNLIHR	8	Unmodified	_ETTNLIHR_					0	0	0			REV__ENSG00000116213|ENST00000270708|WRAP73	REV__ENSG00000116213|ENST00000270708|WRAP73	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2676696777344	2	492.267073	982.519593	-0.061096	-3.0076E-05	0.27069	0.00013325	0.20959	0.00010318	492.26732962607656	26.116	0.24557	26.207	26.103	26.349	0.091507					36	21	2	0	0	0	0.53026	1	3059	3059		7.9102	1.187	1	24630	+		3237	8807	2244	2257	4184	4184					0.02763401640675056
ETTNLIHR	8	Unmodified	_ETTNLIHR_					0	0	0			REV__ENSG00000116213|ENST00000270708|WRAP73	REV__ENSG00000116213|ENST00000270708|WRAP73	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	492.267073	982.519593	-0.14301	-7.0399E-05	0.14972	7.3701E-05	0.0067077	3.302E-06	492.2671556426027	26.282	0.27908	26.282	26.139	26.418	0	0.037064	-5.3191E-05	NaN	7.9102	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28838	+		3238	8807	2244	2257							0.02763401640675056
ETTNLIHR	8	Unmodified	_ETTNLIHR_					0	0	0			REV__ENSG00000116213|ENST00000270708|WRAP73	REV__ENSG00000116213|ENST00000270708|WRAP73	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.267073	982.519593	-0.061096	-3.0076E-05	0.27069	0.00013325	0.20959	0.00010318	492.26732962607656	26.116	0.24557	26.207	26.103	26.349	0.091507	-0.037064	6.5911E-05	NaN	7.9102	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24630	+		3239	8807	2244	2257							0.02763401640675056
ETTTTLATST	10	Unmodified	_ETTTTLATST_					0	0	0		nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1;nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2415161132812	2	513.253494	1024.49243	-0.12441	-6.3854E-05	-0.95877	-0.00049209	-1.0832	-0.00055595	513.2528690228219	27.529	0.47477	27.529	27.344	27.818	0					73	38	2	0	0	0	0.46746	1	3656	3656		1.4819	1.4819	1	313210			3240	4794	2245	2258	4185	4185					-0.018831714810403355
ETTVYVIVR	9	Unmodified	_ETTVYVIVR_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.307861328125	2	540.308406	1078.60226	0.2336	0.00012622	-0.42048	-0.00022719	-0.18688	-0.00010097	540.3081075561047	49.536	0.59501	49.536	49.34	49.935	0					55	20	4	0	0	0	0.026209	2	10154	10154;10206		53.833	38.995	1	457340			3241	3592	2246	2259	4186;4187	4186					0.0661029864882039
ETTVYVIVR	9	Unmodified	_ETTVYVIVR_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3082885742188	2	540.308406	1078.60226	0.29985	0.00016201	-0.36984	-0.00019983	-0.069988	-3.7815E-05	540.3080823171889	49.469	0.70531	49.545	49.338	50.043	0.076603					47	25	3	0	0	0	0.029291	2	10001	10001;10053		51.63	36.792	1	400530			3242	3592	2246	2259	4188;4189	4188					0.0661029864882039
ETVALPQLF	9	Unmodified	_ETVALPQLF_					0	0	0			REV__nc|ENSG00000062524|P29376-3|LTK	REV__nc|ENSG00000062524|P29376-3|LTK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7763366699219	2	509.2844	1016.55425	0.11228	5.7183E-05	-1.394	-0.00070992	-1.2817	-0.00065274	509.2848422794978	89.655	0.24876	89.655	89.562	89.811	0					11	9	2	0	0	0	0.25051	1	22370	22370		7.9102	1.5561	1	38295	+		3243	8085	2247	2260	4190	4190					0.046632247287675455
ETVNNQKYMS	10	Unmodified	_ETVNNQKYMS_					0	0	0		ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3	ENSG00000077264|ENST00000372007|PAK3	ENSG00000077264|ENST00000372007|PAK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.3505249023438	2	607.27952	1212.54449	0.60775	0.00036908	-4.1246	-0.0025048	-3.5168	-0.0021357	607.2767093043228	61.033	0.56269	61.106	60.851	61.414	0.073421					36	18	3	0	0	0	0.31443	1	13504	13504		16.149	1.3108	1	240290			3244	858	2248	2261	4191	4191					-0.05328331338932912
ETVTKSYQK	9	Unmodified	_ETVTKSYQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2870483398438	2	542.287671	1082.56079	-0.3443	-0.00018671	-0.29087	-0.00015773	-0.63516	-0.00034444	542.2875836928982	17.341	0.25947	17.341	17.253	17.512	0					47	31	2	0	0	0	0.33978	1	892	892		1.4819	0.28856	1	28128			3245	2196	2249	2262	4192	4192					0.02281117889469897
ETWITCDNKI	10	Unmodified	_ETWITCDNKI_					0	0	0		CD163|p.E995*|1|0.36|ENSG00000177575|chr12:7483472-7483473|-/A|frameshift_variant;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7-4|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF	CD163|p.E995*|1|0.36|ENSG00000177575|chr12:7483472-7483473|-/A|frameshift_variant	CD163|p.E995*|1|0.36|ENSG00000177575|chr12:7483472-7483473|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3319702148438	2	611.792263	1221.56997	0.17488	0.00010699	-2.2189	-0.0013575	-2.044	-0.0012505	611.7909006237504	79.347	0.39915	79.374	79.249	79.648	0.026436					20	14	2	0	0	0	0.31761	1	19125	19125		5.2969	0.39987	1	130360			3246	113	2250	2263	4193	4193					-0.03194856816526226
ETWPGGPAR	9	Unmodified	_ETWPGGPAR_					0	0	0		ENST00000367242.3_1_1:202976531-202976618:+|nuORF	ENST00000367242.3_1_1:202976531-202976618:+|nuORF	ENST00000367242.3_1_1:202976531-202976618:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.24224853515625	2	485.740691	969.466829	-0.10738	-5.2159E-05	0.22239	0.00010802	0.11501	5.5864E-05	485.740615133964	35.671	0.52	35.671	35.449	35.969	0					30	19	2	0	0	0	0.32112	1	5984	5984		3.9444	0	1	43245			3247	6175	2251	2264	4194	4194					-0.019125564221326385
EVADPTAHR	9	Unmodified	_EVADPTAHR_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.248779296875	2	498.24888	994.483208	-0.2572	-0.00012815	0.58797	0.00029295	0.33076	0.0001648	498.2490535240536	19.306	0.30534	19.306	19.163	19.469	0					58	33	2	0	0	0	0.25746	1	1321	1321		3.2813	1.4371	1	21229			3248	5283	2252	2265	4195	4195					-0.014254752560646011
EVADPTAHR	9	Unmodified	_EVADPTAHR_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.24888	994.483208	0.1983	9.8802E-05	0.32096	0.00015992	0.51925	0.00025872	498.24894213717397	19.213	0.26742	19.309	19.181	19.448	0.095232	0.0015469	-0.00017282	NaN	3.2813	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22110			3249	5283	2252	2265							-0.014254752560646011
EVAEYLTPV	9	Unmodified	_EVAEYLTPV_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000488910.1_1_3:112277171-112280432:-|nuORF;ENST00000465980.1_1_3:112262891-112280447:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.3183898925781	2	510.76604	1019.51753	0.39213	0.00020029	0.09779	4.9948E-05	0.48992	0.00025023	510.7659207376145	67.68	0.67293	67.68	67.348	68.021	0					33	25	2	0	0	0	0.2446	1	15651	15651		11.64	0.81637	1	185390			3250	3228	2253	2266	4196	4196					0.00854928112187281
EVAGTVTGQKR	11	Unmodified	_EVAGTVTGQKR_					0	0	0		ENSG00000165819|ENST00000298717|METTL3;ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF	ENSG00000165819|ENST00000298717|METTL3	ENSG00000165819|ENST00000298717|METTL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.31689453125	2	573.317294	1144.62004	-0.3506	-0.00020101	0.29495	0.0001691	-0.055652	-3.1906E-05	573.3175653163444	19.405	0.24962	19.405	19.279	19.529	0					39	27	2	0	0	0	0.40192	1	1338	1338		3.8763	3.8763	1	23108			3251	4110	2254	2267	4197	4197					0.053510139036461624
EVAPPEYHR	9	Unmodified	_EVAPPEYHR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2721557617188	2	549.272355	1096.53016	-0.081686	-4.4868E-05	0.3281	0.00018022	0.24642	0.00013535	549.2724746434109	27.789	0.4158	27.789	27.64	28.056	0					55	26	3	0	0	0	0.28919	2	3629	3629;3668		8.1555	5.4203	1	45556			3252	5045	2255	2268	4198;4199	4198					-0.014246157049228714
EVAPPEYHR	9	Unmodified	_EVAPPEYHR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.272216796875	2	549.272355	1096.53016	-0.030614	-1.6815E-05	0.036573	2.0088E-05	0.0059589	3.2731E-06	549.2722995505442	27.685	0.40498	27.767	27.632	28.037	0.082132					49	24	3	0	0	0	0.31086	2	3484	3484;3528		5.2969	2.5617	1	74383			3253	5045	2255	2268	4200;4201	4200					-0.014246157049228714
EVAPPEYHRK	10	Unmodified	_EVAPPEYHRK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.2155456542969	3	409.21565	1224.62512	-0.075027	-3.0702E-05	-0.18	-7.366E-05	-0.25503	-0.00010436	409.21555025885135	21.943	1.0142	21.943	21.718	22.732	0					269	88	4	0	0	0	0.45198	6	2030	1959;1996;2030;2100;2143;2190		4.4062	2.4348	1	448380			3254	5045	2256	2269	4202;4203;4204;4205;4206;4207	4204					0.02179317766240274
EVAPPEYHRK	10	Unmodified	_EVAPPEYHRK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.31982421875	2	613.319837	1224.62512	-0.14098	-8.6465E-05	0.29959	0.00018375	0.15861	9.7281E-05	613.3199202843779	21.734	0.31213	21.836	21.71	22.022	0.10178					95	34	4	0	0	0	0.44671	2	1820	1820;1850		2.4985	0.41248	1	58156			3255	5045	2256	2269	4208;4209	4208					0.02179317766240274
EVAPPEYHRK	10	Unmodified	_EVAPPEYHRK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.2156982421875	3	409.21565	1224.62512	-0.13152	-5.382E-05	-0.013623	-5.5748E-06	-0.14514	-5.9395E-05	409.2156717383023	21.752	0.86384	21.853	21.632	22.496	0.10178					247	83	4	0	0	0	0.30721	4	1842	1842;1873;1905;1951		21.799	6.9616	1	604670			3256	5045	2256	2269	4210;4211;4212;4213	4210					0.02179317766240274
EVAQFLTGR	9	Unmodified	_EVAQFLTGR_					0	0	0		ENSG00000100418|ENST00000263256|DESI1;ENST00000463886.1_1_22:41998573-42000148:-|nuORF;ENST00000482612.1_1_22:41999261-42000085:-|nuORF	ENSG00000100418|ENST00000263256|DESI1	ENSG00000100418|ENST00000263256|DESI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7772216796875	2	510.777274	1019.53999	0.21732	0.000111	-0.28521	-0.00014568	-0.067882	-3.4672E-05	510.77704093933284	48.39	0.67094	48.39	48.159	48.83	0					47	22	3	0	0	0	0.0052326	1	9828	9828		81.915	43.3	1	280620			3257	1197	2257	2270	4214	4214					0.031005723004682295
EVAQFLTGR	9	Unmodified	_EVAQFLTGR_					0	0	0		ENSG00000100418|ENST00000263256|DESI1;ENST00000463886.1_1_22:41998573-42000148:-|nuORF;ENST00000482612.1_1_22:41999261-42000085:-|nuORF	ENSG00000100418|ENST00000263256|DESI1	ENSG00000100418|ENST00000263256|DESI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7774353027344	2	510.777274	1019.53999	0.32967	0.00016839	-0.19698	-0.00010061	0.1327	6.7779E-05	510.7771461398648	48.298	0.62802	48.378	48.155	48.783	0.080029					46	20	3	0	0	0	0.018907	2	9659	9659;9715		59.052	31.829	1	223000			3258	1197	2257	2270	4215;4216	4215					0.031005723004682295
EVAQKVENA	9	Unmodified	_EVAQKVENA_					0	0	0			REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2588806152344	2	494.258914	986.503274	-0.014379	-7.1069E-06	-0.12313	-6.0856E-05	-0.13751	-6.7963E-05	494.2588339999909	29.079	1.2462	29.157	28.931	30.177	0.078287					172	77	4	0	0	0	0.0046402	1	3903	3903		85.642	6.0452	1	943520	+		3259	10222	2258	2271	4217	4217					0.009482756839020112
EVAQPGPSNR	10	Unmodified	_EVAQPGPSNR_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7675170898438	2	527.767437	1053.52032	0.048178	2.5427E-05	-0.24744	-0.00013059	-0.19926	-0.00010516	527.7672698701886	20.924	0.4243	21.024	20.851	21.275	0.099499					105	47	3	0	0	0	0.25648	1	1628	1628		27.223	11.074	1	59272			3260	3123	2259	2272	4218	4218					-0.004298037102898888
EVARMDNPDTF	11	Unmodified	_EVARMDNPDTF_					0	0	0		CON__P01045-1;CON__Q2KJ62;CON__P01044-1	CON__P01045-1	CON__P01045-1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.7905883789062	2	647.790252	1293.56595	0.28404	0.000184	0.51754	0.00033526	0.80159	0.00051926	647.7904714558505	90.684	0.65514	90.684	90.467	91.122	0					56	23	3	0	0	0	0.19318	1	22702	22702		31.268	7.2478	1	612590		+	3261	213	2260	2273	4219	4219					-0.06908946310227293
EVCAFACKRKY	11	Unmodified	_EVCAFACKRKY_					0	0	0		ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.8860778808594	3	439.886259	1316.63695	-0.2457	-0.00010808	-0.031759	-1.397E-05	-0.27746	-0.00012205	439.886232811729	28.26	1.0488	28.342	28.107	29.156	0.082132					191	66	5	0	0	0	0.34507	2	3657	3657;3697		12.856	12.856	1	1101800			3262	1913	2261	2274	4220;4221	4220					-0.008705248063961335
EVCIWECIE	9	Unmodified	_EVCIWECIE_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7935791015625	2	562.24356	1122.47257	0.2495	0.00014028	-1.0096	-0.00056763	-0.76007	-0.00042735	562.2432125219696	71.751	0.5775	71.807	71.54	72.117	0.055931					30	20	3	0	0	0	0.25281	1	16848	16848		6.7232	2.3939	1	148030			3263	7545	2262	2275	4222	4222					-0.08376962017018741
EVCVFFVF	8	Unmodified	_EVCVFFVF_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.24578857421875	2	495.243689	988.472826	0.34012	0.00016844	3.692	0.0018284	4.0321	0.0019969	495.24528955540137	50.24	0.57415	50.24	50.05	50.624	0					36	20	3	0	0	0	0.45077	1	10376	10376		19.439	2.3261	1	132180	+		3264	11187	2263	2276	4223	4223					-0.02187174234836675
EVCVFFVF	8	Unmodified	_EVCVFFVF_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.24560546875	2	495.243689	988.472826	0.3896	0.00019295	3.5515	0.0017589	3.9411	0.0019518	495.2451772030397	50.151	0.53899	50.224	50.04	50.579	0.07312					27	18	2	0	0	0	0.45077	1	10215	10215		19.439	2.3261	1	152040	+		3265	11187	2263	2276	4224	4224					-0.02187174234836675
EVCVFFVF	8	Unmodified	_EVCVFFVF_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	495.243689	988.472826	0.34012	0.00016844	3.692	0.0018284	4.0321	0.0019969	495.24528955540137	50.24	0.57415	50.24	50.05	50.624	0	0.0080413	8.6623E-05	NaN	19.439	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132180	+		3266	11187	2263	2276							-0.02187174234836675
EVCVFFVF	8	Unmodified	_EVCVFFVF_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.243689	988.472826	0.3896	0.00019295	3.5515	0.0017589	3.9411	0.0019518	495.2451772030397	50.151	0.53899	50.224	50.04	50.579	0.07312	-0.0080413	-5.2557E-05	NaN	19.439	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152040	+		3267	11187	2263	2276							-0.02187174234836675
EVDPATVDMK	10	Unmodified	_EVDPATVDMK_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.267578125	2	552.765714	1103.51688	0.16819	9.297E-05	0.4447	0.00024582	0.61289	0.00033879	552.7659447762762	33.093	2.1934	33.167	32.422	34.615	0.074322					239	96	3	0	0	0	0.45945	1	5274	5274		2.9952	0	1	187640	+		3268	10675	2264	2277	4225	4225					-0.030742345991939146
EVDPGSAEL	9	Unmodified	_EVDPGSAEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.93499755859375	2	458.716547	915.418542	0.45478	0.00020861	-0.52299	-0.0002399	-0.068211	-3.129E-05	458.7161633349465	47.84	0.51929	47.84	47.64	48.159	0					28	17	2	0	0	0	0.090621	1	9647	9647		46.021	19.137	1	142140			3269	4351	2265	2278	4226	4226					-0.04255094852703678
EVDPGSAEL	9	Unmodified	_EVDPGSAEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.93475341796875	2	458.716547	915.418542	0.43016	0.00019732	-0.55561	-0.00025487	-0.12545	-5.7545E-05	458.71610782732824	47.735	0.47801	47.815	47.636	48.114	0.080029					27	17	2	0	0	0	0.19376	1	9495	9495		25.399	9.5521	1	90582			3270	4351	2265	2278	4227	4227					-0.04255094852703678
EVDVALSEL	9	Unmodified	_EVDVALSEL_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.75537109375	2	487.755672	973.496792	0.35746	0.00017436	-0.35951	-0.00017535	-0.0020476	-9.9872E-07	487.7554501011175	69.167	0.46062	69.167	68.983	69.443	0					36	15	3	0	0	0	0.14091	1	16220	16220		25.399	0	1	447950	+		3271	10929	2266	2279	4228	4228					0.008983377325193942
EVEAEAVNR	9	Unmodified	_EVEAEAVNR_					0	0	0		ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	ENST00000521983.1_1_8:26484742-26500445:+|nuORF	ENST00000521983.1_1_8:26484742-26500445:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7393798828125	2	508.753995	1015.49344	-0.067772	-3.4479E-05	-0.60569	-0.00030815	-0.67346	-0.00034263	508.75350348852544	24.921	0.24564	25.018	24.928	25.174	0.096073					37	22	3	0	0	0	0.18398	1	2696	2696		20.415	3.4722	1	25250			3272	1082	2267	2280	4229	4229					-0.0136891232148173
EVERYDKKTE	10	Unmodified	_EVERYDKKTE_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.88507080078125	3	432.885858	1295.63574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.664	1	72.664	72.164	73.164	0								0	0	0	0.33975	1	17218	17218		0.50596	0	1		+		3273	8531	2268	2281	4230	4230					-0.0002474436994361895
EVEVQFYRG	9	Unmodified	_EVEVQFYRG_					0	0	0			REV__ENSG00000166801|ENST00000675163|FAM111A	REV__ENSG00000166801|ENST00000675163|FAM111A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7925415039062	2	563.780013	1125.54547	0.31456	0.00017734	0.57797	0.00032585	0.89253	0.00050319	563.7801747865678	50.405	0.23183	50.478	50.319	50.551	0.07312					10	7	2	0	0	0	0.25875	1	10265	10265		1.8442	0.19162	1	33695	+		3274	10091	2269	2282	4231	4231					-0.012277489077177961
EVFDKTYQF	9	Unmodified	_EVFDKTYQF_					0	0	0		nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7825317382812	2	588.782222	1175.54989	0.6539	0.000385	-1.2648	-0.00074466	-0.61085	-0.00035966	588.7817111508177	55.395	0.52646	55.395	55.166	55.692	0					29	18	3	0	0	0	0.0097877	2	11977	11954;11977		67.838	33.736	1	276680			3275	2259	2270	2283	4232;4233	4233					-0.03086284484834323
EVFDKTYQF	9	Unmodified	_EVFDKTYQF_					0	0	0		nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7822875976562	2	588.782222	1175.54989	0.68657	0.00040424	-1.4408	-0.0008483	-0.75419	-0.00044406	588.7817449320659	55.37	0.40621	55.435	55.268	55.674	0.065128					25	15	2	0	0	0	0.015341	2	11811	11811;11838		61.602	21.645	1	214450			3276	2259	2270	2283	4234;4235	4234					-0.03086284484834323
EVFFSEKIYKL	11	Unmodified	_EVFFSEKIYKL_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.2585754394531	3	468.258744	1401.7544	0.25869	0.00012114	-0.29207	-0.00013676	-0.033377	-1.5629E-05	468.2584877150399	61.354	0.31279	61.354	61.135	61.447	0					20	10	3	0	0	0	0.39873	1	13781	13781		4.6037	2.5198	1	152560			3277	536	2271	2284	4236	4236					0.06959654605702781
EVFFSEKIYKL	11	Unmodified	_EVFFSEKIYKL_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	468.258744	1401.7544	0.03791	1.7752E-05	-0.071672	-3.3561E-05	-0.033762	-1.5809E-05	468.5929606986726	61.321	0.30954	61.394	61.143	61.453	0.073421	0.01996	0.00023273	NaN	4.6037	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141140			3278	536	2271	2284							0.06959654605702781
EVFHQSLDS	9	Unmodified	_EVFHQSLDS_					0	0	0			REV__ENSG00000269964|ENST00000684080|MEI4	REV__ENSG00000269964|ENST00000684080|MEI4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2485961914062	2	531.248546	1060.48254	0.31423	0.00016693	0.16626	8.8325E-05	0.48049	0.00025526	531.2485608952026	37.644	0.28875	37.644	37.494	37.783	0					15	9	2	0	0	0	0.30397	1	6610	6610		6.2058	2.6093	1	33286	+		3279	11125	2272	2285	4237	4237					-0.04528314695744484
EVFHQSLDS	9	Unmodified	_EVFHQSLDS_					0	0	0			REV__ENSG00000269964|ENST00000684080|MEI4	REV__ENSG00000269964|ENST00000684080|MEI4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	531.248546	1060.48254	0.39191	0.0002082	0.42302	0.00022473	0.81494	0.00043293	531.2487226905375	37.53	0.30063	37.615	37.472	37.772	0.084476	-0.014465	9.1584E-05	NaN	6.2058	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34604	+		3280	11125	2272	2285							-0.04528314695744484
EVFNRLCPVN	10	Unmodified	_EVFNRLCPVN_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.8448486328125	2	595.802965	1189.59138	0.25668	0.00015293	-2.0409	-0.001216	-1.7843	-0.0010631	595.801812348676	101.71	0.60314	101.71	101.23	101.84	0					58	40	2	0	0	0	0.31761	1	26074	26074		5.2969	0.96765	1	93357	+		3281	8179	2273	2286	4238	4238					0.004165730028944381
EVFPHISVPFL	11	Unmodified	_EVFPHISVPFL_					0	0	0		ENST00000478263.5_1_3:69249557-69249674:-|nuORF	ENST00000478263.5_1_3:69249557-69249674:-|nuORF	ENST00000478263.5_1_3:69249557-69249674:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.7562866210938	2	642.852981	1283.69141	0.57067	0.00036686	1.8863	0.0012126	2.457	0.0015795	642.8543531730371	80.406	0.2121	80.43	80.273	80.485	0.023613					11	7	2	0	0	0	0.31042	1	19390	19390		6.2058	2.2614	1	57943			3282	6725	2274	2287	4239	4239					0.06091133608333621
EVFREKSLL	9	Unmodified	_EVFREKSLL_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8237915039062	2	560.821681	1119.62881	0.32277	0.00018102	1.7654	0.0009901	2.0882	0.0011711	560.8230532669259	78.483	0.80137	78.483	77.928	78.73	0					31	27	2	0	0	0	0.30397	1	19003	19003		6.2058	0	1	66597			3283	597	2275	2288	4240	4240					0.07377987540144204
EVFRTKIVEK	10	Unmodified	_EVFRTKIVEK_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.9151306152344	3	416.915201	1247.72377	-0.27613	-0.00011512	0.26473	0.00011037	-0.011397	-4.7514E-06	417.2496511696489	29.445	0.33178	29.523	29.381	29.713	0.078287					41	18	3	0	0	0	0.44859	1	4006	4006		5.0475	2.2042	1	49471			3284	5059	2276	2289	4241	4241					0.10981921011330087
EVFSPPGSDR	10	Unmodified	_EVFSPPGSDR_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7616577148438	2	545.76182	1089.50909	0.19518	0.00010652	-0.28445	-0.00015524	-0.089267	-4.8718E-05	545.7615801873335	39.01	0.96766	39.01	38.514	39.482	0					74	36	3	0	0	0	0.24525	2	6992	6937;6992		28.495	3.5035	1	108280			3285	3090	2277	2290	4242;4243	4243					-0.03208625804427356
EVFSPPGSDR	10	Unmodified	_EVFSPPGSDR_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7622680664062	2	545.76182	1089.50909	0.2821	0.00015396	-0.033383	-1.8219E-05	0.24872	0.00013574	545.7617269406486	38.9	0.91914	38.987	38.514	39.433	0.08688					74	35	3	0	0	0	0.28859	2	6871	6805;6871		23.79	3.3752	1	74734			3286	3090	2277	2290	4244;4245	4245					-0.03208625804427356
EVGFFVTLHES	11	Unmodified	_EVGFFVTLHES_					0	0	0			REV__ENSG00000232030|ENST00000416929|MAGEB6B	REV__ENSG00000232030|ENST00000416929|MAGEB6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.8152465820312	2	632.814053	1263.61355	0.53592	0.00033914	1.0005	0.00063316	1.5365	0.0009723	632.8146012862021	98.235	0.56976	98.277	98.034	98.603	0.041939					62	29	3	0	0	0	0.38315	1	24836	24836		8.1555	0.54658	1	316440	+		3287	11042	2278	2291	4246	4246					-0.007709240477197454
EVGGKVPYI	9	Unmodified	_EVGGKVPYI_					0	0	0		nc|ENSG00000171121|Q9NPA1-4|KCNMB3;ENSG00000171121|ENST00000392685|KCNMB3;nc|ENSG00000171121|Q9NPA1-2|KCNMB3;nc|ENSG00000171121|Q9NPA1|KCNMB3	nc|ENSG00000171121|Q9NPA1-4|KCNMB3	nc|ENSG00000171121|Q9NPA1-4|KCNMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2706604003906	2	481.271293	960.528032	-0.0016801	-8.086E-07	0.42712	0.00020556	0.42544	0.00020475	481.27122620797286	51.852	0.49536	51.92	51.707	52.203	0.067173					32	16	3	0	0	0	0.27332	1	10775	10775		10.074	0.6908	1	185490			3288	4428	2279	2292	4247	4247					0.04618955557270965
EVGKVIQQGR	10	Unmodified	_EVGKVIQQGR_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3219604492188	2	557.32238	1112.63021	-0.11189	-6.2357E-05	-0.60988	-0.0003399	-0.72177	-0.00040226	557.3222870053742	23.004	0.25239	23.004	22.87	23.122	0					33	24	2	0	0	0	0.45794	1	2308	2308		3.2813	1.4371	1	30338			3289	1550	2280	2293	4248	4248					0.07839621628886562
EVGKVIQQGR	10	Unmodified	_EVGKVIQQGR_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.322509765625	2	557.32238	1112.63021	0.24959	0.0001391	-0.89298	-0.00049768	-0.64339	-0.00035858	557.3220827837529	22.801	0.32255	22.903	22.756	23.079	0.10178					38	29	2	0	0	0	0.45794	1	2112	2112		3.2813	1.4371	1	22821			3290	1550	2280	2293	4249	4249					0.07839621628886562
EVGQGGGAAHH	11	Unmodified	_EVGQGGGAAHH_					0	0	0		ENST00000338110.9_1_16:30075281-30075485:+|nuORF	ENST00000338110.9_1_16:30075281-30075485:+|nuORF	ENST00000338110.9_1_16:30075281-30075485:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.813232421875	2	510.236304	1018.45806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.69	1	101.74	101.24	102.24	0.042656								0	0	0	0.33792	1	25905	25905		1.4819	0.68827	1				3291	6079	2281	2294	4250	4250					-0.05043530058628676
EVGSSRPAY	9	Unmodified	_EVGSSRPAY_					0	0	0		ENST00000595094.1_1_19:20736613-20844252:-|nuORF	ENST00000595094.1_1_19:20736613-20844252:-|nuORF	ENST00000595094.1_1_19:20736613-20844252:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2560729980469	2	483.237981	964.461409	-0.15022	-7.2593E-05	0.71338	0.00034473	0.56316	0.00027214	483.2383593501244	35.503	0.28617	35.503	35.389	35.675	0					11	9	2	0	0	0	0.23598	1	5936	5936		10.824	1.4408	1	36443			3292	7281	2282	2295	4251	4251					-0.022242800046228695
EVHDKGALR	9	Unmodified	_EVHDKGALR_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5;SLFN5|p.Y803Ifs*2|1|0.2|ENSG00000166750|chr17:35265613-35265614|-/A|frameshift_variant;nc|ENSG00000166750|Q08AF3-2|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.77978515625	2	512.780348	1023.54614	0.23156	0.00011874	0.093791	4.8094E-05	0.32535	0.00016683	512.7802247837234	15.824	0.11582	15.896	15.828	15.944	0.072399					19	14	2	0	0	0	0.32375	1	561	561		3.5965	1.5367	1	11794			3293	4178	2283	2296	4252	4252					0.035310905319988706
EVHGMVTVEI	10	Unmodified	_EVHGMVTVEI_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000007350	REV__CON__ENSEMBL:ENSBTAP00000007350	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2822265625	2	557.284074	1112.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.322	1	52.389	51.889	52.889	0.067173								0	0	0	0.25847	1	10884	10884		22.736	4.5899	1		+	+	3294	7830	2284	2297	4253	4253					0.0018206201741577388
EVHGPDWHL	9	Unmodified	_EVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7901000976562	2	545.259248	1088.50394	-0.11332	-6.1791E-05	-1.015	-0.00055344	-1.1283	-0.00061523	545.2593139743825	45.766	0.62135	45.766	45.388	46.009	0					35	21	3	0	0	0	0.20845	1	9038	9038		21.747	13.836	1	84745			3295	2279	2285	2298	4254	4254					-0.03676884876381337
EVHGPDWHL	9	Unmodified	_EVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2594604492188	2	545.259248	1088.50394	0.070257	3.8308E-05	-0.55546	-0.00030287	-0.4852	-0.00026456	545.2593403066152	45.67	0.61321	45.756	45.34	45.954	0.085621					33	23	2	0	0	0	0.033885	1	8868	8868		48.346	30.199	1	101260			3296	2279	2285	2298	4255	4255					-0.03676884876381337
EVHHPICAF	9	Unmodified	_EVHHPICAF_					0	0	0		nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6	nc|ENSG00000112414|Q86SQ4-4|ADGRG6	nc|ENSG00000112414|Q86SQ4-4|ADGRG6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7615966796875	2	526.752744	1051.49094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.227	1	48.227	47.727	48.727	0								0	0	0	0.25361	1	9776	9776		8.5933	0.43775	1				3297	1759	2286	2299	4256	4256					-0.03275039260142876
EVHTKINTR	9	Unmodified	_EVHTKINTR_					0	0	0		nc|ENSG00000147548|Q9BZ95-3|NSD3;nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-3|NSD3	nc|ENSG00000147548|Q9BZ95-3|NSD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3067626953125	2	549.306729	1096.59891	0.30967	0.00017011	-0.70104	-0.00038509	-0.39137	-0.00021498	549.3063700059379	16.7	0.17368	16.778	16.673	16.847	0.077806					36	21	2	0	0	0	0.31389	1	706	706		4.897	3.4151	1	26717			3298	3331	2287	2300	4257	4257					0.05447048594805892
EVIDVFEIM	9	Oxidation (M)	_EVIDVFEIM(Oxidation (M))_		EVIDVFEIM(1)		EVIDVFEIM(120)	0	0	1		KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	KIAA0391-FAM177A1|2|fusion	KIAA0391-FAM177A1|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7730712890625	2	555.773008	1109.53146	0.5787	0.00032163	-0.3225	-0.00017923	0.2562	0.00014239	555.7729020673231	83.073	0.548	83.073	82.823	83.371	0					43	18	3	0	0	0	0.0012363	1	20409	20409		120.45	74.429	1	349190			3299	7371	2288	2301	4258	4258		329			-0.01892162451031254
EVIDVFEIM	9	Oxidation (M)	_EVIDVFEIM(Oxidation (M))_		EVIDVFEIM(1)		EVIDVFEIM(120)	0	0	1		KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	KIAA0391-FAM177A1|2|fusion	KIAA0391-FAM177A1|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7731323242188	2	555.773008	1109.53146	0.54577	0.00030332	-0.22468	-0.00012487	0.32109	0.00017845	555.7728587727396	83.013	0.59193	83.035	82.795	83.387	0.021744					46	20	3	0	0	0	0.0012363	1	20236	20236		120.45	65.677	1	366120			3300	7371	2288	2301	4259	4259		329			-0.01892162451031254
EVIDVFEIM	9	Unmodified	_EVIDVFEIM_					0	0	0		KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	KIAA0391-FAM177A1|2|fusion	KIAA0391-FAM177A1|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7760009765625	2	547.775551	1093.53655	0.45956	0.00025174	0.31419	0.0001721	0.77375	0.00042384	547.775653311705	96.699	0.46461	96.699	96.465	96.929	0					24	20	2	0	0	0	0.23216	1	24531	24531		14.838	3.198	1	117820			3301	7371	2288	2302	4260	4260					-0.006478585883996857
EVIDVFEIM	9	Unmodified	_EVIDVFEIM_					0	0	0		KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	KIAA0391-FAM177A1|2|fusion	KIAA0391-FAM177A1|2|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7750244140625	2	547.775551	1093.53655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.729	1	96.769	96.269	97.269	0.039772								0	0	0	0.22204	1	24396	24396		14.838	3.198	1				3302	7371	2288	2302	4261	4261					-0.006478585883996857
EVIFGYDIAK	10	Unmodified	_EVIFGYDIAK_					0	0	0			REV__tr|U7T2W4|U7T2W4_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00483PE=3SV=1	REV__tr|U7T2W4|U7T2W4_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00483PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.291015625	2	577.808239	1153.60193	0.44701	0.00025829	0.11315	6.5377E-05	0.56016	0.00032366	577.8080117921988	91.962	0.3026	91.998	91.887	92.19	0.03653					14	10	2	0	0	0	0.31532	1	22910	22910		13.042	0.80181	1	103290	+		3303	13272	2289	2303	4262	4262					0.03126878928947008
EVILIDPFHK	10	Unmodified	_EVILIDPFHK_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8451538085938	2	605.845156	1209.67576	0.63158	0.00038264	-0.18357	-0.00011121	0.44801	0.00027143	605.8449197609475	62.049	0.9667	62.049	61.87	62.837	0					89	36	4	0	0	0	6.0366E-05	1	13974	13974		117.76	53.8	1	983440			3304	4597	2290	2304	4263	4263					0.0793084709125651
EVILIDPFHK	10	Unmodified	_EVILIDPFHK_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2325134277344	3	404.23253	1209.67576	0.54985	0.00022227	-0.39971	-0.00016158	0.15014	6.0691E-05	404.232323390163	62.047	1.1235	62.047	61.846	62.969	0					138	42	5	0	0	0	0.077316	4	13986	13986;14035;14080;14128		50.13	25.173	1	2826300			3305	4597	2290	2304	4264;4265;4266;4267	4264					0.0793084709125651
EVILIDPFHK	10	Unmodified	_EVILIDPFHK_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2325134277344	3	404.23253	1209.67576	0.12274	4.9616E-05	-0.027443	-1.1093E-05	0.095298	3.8523E-05	404.2324705870386	61.997	1.1665	62.07	61.825	62.991	0.073421					124	45	4	0	0	0	0.14608	5	13830	13782;13830;13876;13924;13982		39.923	14.966	1	2542400			3306	4597	2290	2304	4268;4269;4270;4271;4272	4269					0.0793084709125651
EVILIDPFHK	10	Unmodified	_EVILIDPFHK_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8455810546875	2	605.845156	1209.67576	0.70825	0.00042909	-0.23259	-0.00014091	0.47566	0.00028818	605.8449061031689	61.994	0.92504	62.067	61.881	62.806	0.073421					68	34	3	0	0	0	6.0366E-05	1	13831	13831		128.93	55.964	1	898100			3307	4597	2290	2304	4273	4273					0.0793084709125651
EVILIDPFHK	10	Unmodified	_EVILIDPFHK_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2325134277344	3	404.23253	1209.67576	0.20093	8.1221E-05	-0.13123	-5.3048E-05	0.069694	2.8173E-05	404.2325181362426	63.08	0.33602	63.152	63.054	63.39	0.072701					18	15	2	0	0	0	0.46338	1	14168	14168		2.2527	0	1	85541			3308	4597	2290	2304	4274	4274					0.0793084709125651
EVIQNEPNI	9	Unmodified	_EVIQNEPNI_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2711791992188	2	528.272021	1054.52949	-0.19285	-0.00010188	0.59396	0.00031377	0.40111	0.0002119	528.2718591239927	25.899	0.37412	25.899	25.754	26.128	0					59	28	3	0	0	0	0.33849	1	3087	3087		1.6526	0.17072	1	35362	+		3309	9852	2291	2305	4275	4275					0.004405448553598035
EVISPDTTER	10	Unmodified	_EVISPDTTER_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7855834960938	2	573.785492	1145.55643	-0.12605	-7.2327E-05	0.67695	0.00038842	0.5509	0.0003161	573.7857767115835	32.242	0.56441	32.242	32	32.564	0					49	22	3	0	0	0	0.18939	1	4973	4973		34.932	3.6637	1	169000			3310	3090	2292	2306	4276	4276					-0.010523913241058835
EVISPDTTER	10	Unmodified	_EVISPDTTER_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7857055664062	2	573.785492	1145.55643	-0.068136	-3.9095E-05	0.61757	0.00035435	0.54944	0.00031526	573.7857995257793	32.181	0.46056	32.254	32.074	32.534	0.073784					60	22	4	0	0	0	0.33926	1	4841	4841		18.373	2.5259	1	122160			3311	3090	2292	2306	4277	4277					-0.010523913241058835
EVISPDTTER	10	Unmodified	_EVISPDTTER_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	573.785492	1145.55643	-0.12605	-7.2327E-05	0.67695	0.00038842	0.5509	0.0003161	573.7857767115835	32.242	0.56441	32.242	32	32.564	0	-0.0063291	4.8545E-05	NaN	34.932	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169000			3312	3090	2292	2306							-0.010523913241058835
EVISTPGVVAR	11	Unmodified	_EVISTPGVVAR_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7940063476562	2	564.324588	1126.63462	-0.15287	-8.6266E-05	-0.66338	-0.00037436	-0.81624	-0.00046062	564.3241041030037	43.882	0.45314	43.882	43.663	44.116	0					36	15	3	0	0	0	0.25658	1	8472	8472		34.932	15.675	1	160940			3313	1826	2293	2307	4278	4278					0.0763708605179545
EVKMDAEF	8	Unmodified	_EVKMDAEF_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7068176269531	2	484.723318	967.432083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.445	1	52.445	51.945	52.945	0								0	0	0	0.3773	1	11056	11056		32.117	1.8922	1				3314	3093	2294	2308	4279	4279					-0.05293560345114656
EVKMDAEF	8	Unmodified	_EVKMDAEF_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.706787109375	2	484.723318	967.432083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.616	1	52.616	52.116	53.116	0								0	0	0	0.38182	1	11108	11108		24.674	0	1				3315	3093	2294	2308	4280	4280					-0.05293560345114656
EVKMDAEF	8	Unmodified	_EVKMDAEF_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.706787109375	2	484.723318	967.432083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.5	1	52.568	52.068	53.068	0.067173								0	0	0	0.38182	1	10937	10937		24.674	6.5389	1				3316	3093	2294	2308	4281	4281					-0.05293560345114656
EVLENLNF	8	Unmodified	_EVLENLNF_					0	0	0			REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.24993896484375	2	489.250557	976.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.455	1	98.455	97.955	98.955	0								0	0	0	0.38822	1	25075	25075		7.2892	0	1		+		3317	13220	2295	2309	4282	4282					-0.002622252020501037
EVLQFQLDHSS	11	Unmodified	_EVLQFQLDHSS_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8822326660156	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.028	1	95.067	94.567	95.567	0.038872								0	0	0	0.34068	1	23875	23875		0.50596	0	1		+		3318	8859	2296	2310	4283	4283					-0.013567270243811436
EVLQGGSQR	9	Unmodified	_EVLQGGSQR_					0	0	0		ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENSG00000158773|ENST00000368021|USF1	ENSG00000158773|ENST00000368021|USF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2566223144531	2	487.256705	972.498858	-0.46122	-0.00022473	0.25831	0.00012587	-0.20291	-9.8867E-05	487.2568124635924	21.196	0.5717	21.196	21.029	21.601	0					136	60	3	0	0	0	0.17382	2	1805	1771;1805		21.59	4.4773	1	137600			3319	3704	2297	2311	4284;4285	4285					0.011508112610044918
EVLQGGSQR	9	Unmodified	_EVLQGGSQR_					0	0	0		ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENSG00000158773|ENST00000368021|USF1	ENSG00000158773|ENST00000368021|USF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2566833496094	2	487.256705	972.498858	-0.089959	-4.3833E-05	0.1037	5.0527E-05	0.013739	6.6942E-06	487.2566916436432	21.009	0.41804	21.108	20.948	21.367	0.099499					104	47	3	0	0	0	0.034936	2	1637	1637;1669		47.594	13.193	1	121030			3320	3704	2297	2311	4286;4287	4286					0.011508112610044918
EVLTWSNK	8	Unmodified	_EVLTWSNK_					0	0	0		ENST00000426654.6_1_16:69726147-69726186:+|nuORF	ENST00000426654.6_1_16:69726147-69726186:+|nuORF	ENST00000426654.6_1_16:69726147-69726186:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.75885009765625	2	488.758549	975.502546	-0.13574	-6.6345E-05	0.54901	0.00026834	0.41327	0.00020199	488.7589668668761	33.766	0.63318	33.766	33.548	34.181	0					31	22	2	0	0	0	0.53926	1	5395	5395		1.8442	0.19162	1	38795			3321	6472	2298	2312	4288	4288					0.013814810348549145
EVNDPSLTIK	10	Unmodified	_EVNDPSLTIK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3001098632812	2	558.300778	1114.587	-0.45259	-0.00025268	-0.61919	-0.0003457	-1.0718	-0.00059838	558.3003362475395	41.595	0.75042	41.595	41.38	42.131	0					63	27	4	0	0	0	0.42715	1	7742	7742		8.9762	4.4474	1	456920			3322	5390	2299	2313	4289	4289					0.034293870609417354
EVNDPSLTIK	10	Unmodified	_EVNDPSLTIK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3003540039062	2	558.300778	1114.587	-0.20183	-0.00011268	-0.493	-0.00027524	-0.69483	-0.00038793	558.30041488777	41.532	0.49	41.622	41.428	41.918	0.089767					55	20	4	0	0	0	0.27497	1	7640	7640		34.222	14.86	1	387280			3323	5390	2299	2313	4290	4290					0.034293870609417354
EVNDPSLTIK	10	Unmodified	_EVNDPSLTIK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	558.300778	1114.587	-0.45259	-0.00025268	-0.61919	-0.0003457	-1.0718	-0.00059838	558.3003362475395	41.595	0.75042	41.595	41.38	42.131	0	-0.013272	-6.1616E-05	NaN	28.234	63	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456920			3324	5390	2299	2313							0.034293870609417354
EVNDRPVRR	9	Unmodified	_EVNDRPVRR_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8154296875	2	570.815253	1139.61595	0.19194	0.00010956	-0.32875	-0.00018766	-0.13681	-7.8095E-05	570.8151167298167	16.087	0.25848	16.165	16.048	16.306	0.077806					78	33	3	0	0	0	0.30005	1	610	610		6.7232	0.99131	1	77775			3325	2006	2300	2314	4291	4291					0.051729692006119876
EVNDRPVRR	9	Unmodified	_EVNDRPVRR_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	570.815253	1139.61595	-0.42285	-0.00024137	0.12624	7.2058E-05	-0.29661	-0.00016931	570.8153520741205	16.088	0.34133	16.088	15.997	16.339	0	-0.038436	0.0003493	NaN	6.7232	83	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60682			3326	2006	2300	2314							0.051729692006119876
EVNEAELLRR	10	Unmodified	_EVNEAELLRR_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.2263488769531	3	410.226326	1227.65715	0.15741	6.4575E-05	-0.38647	-0.00015854	-0.22905	-9.3963E-05	410.22620822223104	38.124	0.68977	38.211	37.935	38.625	0.08688					55	25	4	0	0	0	0.31735	1	6609	6609		7.4771	2.7611	1	89568			3327	4703	2301	2315	4292	4292					0.05242685449388773
EVNEAELLRR	10	Unmodified	_EVNEAELLRR_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	410.226326	1227.65715	0.5319	0.0002182	-0.76386	-0.00031336	-0.23196	-9.5156E-05	410.2260419051037	38.232	0.60711	38.232	38.05	38.657	0	0.010323	-0.00030933	NaN	7.4771	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124420			3328	4703	2301	2315							0.05242685449388773
EVNQETIQR	9	Unmodified	_EVNQETIQR_					0	0	0		ENSG00000008324|ENST00000011691|SS18L2	ENSG00000008324|ENST00000011691|SS18L2	ENSG00000008324|ENST00000011691|SS18L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.785400390625	2	558.785827	1115.5571	0.10991	6.1417E-05	-0.35654	-0.00019923	-0.24663	-0.00013781	558.7856591998664	25.741	0.3103	25.833	25.72	26.03	0.091507					50	25	3	0	0	0	0.28919	2	2956	2922;2956		8.1555	2.4237	1	36347			3329	396	2302	2316	4293;4294	4294					0.003944481156167967
EVNQETIQRL	10	Unmodified	_EVNQETIQRL_					0	0	0		ENSG00000008324|ENST00000011691|SS18L2	ENSG00000008324|ENST00000011691|SS18L2	ENSG00000008324|ENST00000011691|SS18L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.3269653320312	2	615.327859	1228.64116	-0.71146	-0.00043778	0.23231	0.00014295	-0.47916	-0.00029484	615.3279496587635	42.897	0.44075	42.897	42.708	43.149	0					24	14	3	0	0	0	0.36577	1	8156	8156		17.443	3.0373	1	69288			3330	396	2303	2317	4295	4295					0.0359897921252923
EVNQETIQRL	10	Unmodified	_EVNQETIQRL_					0	0	0		ENSG00000008324|ENST00000011691|SS18L2	ENSG00000008324|ENST00000011691|SS18L2	ENSG00000008324|ENST00000011691|SS18L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.8290405273438	2	615.327859	1228.64116	-0.51824	-0.00031889	0.44368	0.00027301	-0.074555	-4.5876E-05	615.3281532759613	42.772	0.22532	42.862	42.754	42.98	0.089767					15	8	2	0	0	0	0.33957	1	8012	8012		20.581	6.1756	1	51199			3331	396	2303	2317	4296	4296					0.0359897921252923
EVNYVPQK	8	Unmodified	_EVNYVPQK_					0	0	0			REV__ENSG00000133302|ENST00000265140|SLF1	REV__ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7585754394531	2	488.758549	975.502546	-0.098933	-4.8354E-05	0.84714	0.00041405	0.74821	0.00036569	488.7590198982092	33.646	0.58187	33.72	33.479	34.061	0.074322					36	24	2	0	0	0	0.53494	1	5281	5281		4.756	0	1	27717	+		3332	9148	2304	2318	4297	4297					0.013814810348549145
EVPASAFQK	9	Unmodified	_EVPASAFQK_					0	0	0		ENST00000524852.1_1_11:6340395-6340857:-|nuORF;ENST00000532354.1_1_11:6340395-6341123:-|nuORF;ENSG00000170955|ENST00000303927|CAVIN3	ENST00000524852.1_1_11:6340395-6340857:-|nuORF	ENST00000524852.1_1_11:6340395-6340857:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7590637207031	2	488.758549	975.502546	-0.098933	-4.8354E-05	0.84714	0.00041405	0.74821	0.00036569	488.7590198982092	33.646	0.58187	33.72	33.479	34.061	0.074322					36	24	2	0	0	0	0.30757	1	5288	5288		5.7319	1.4026	1	27717			3333	4420	2305	2319	4298	4298					0.013814810348549145
EVPNKIINR	9	Unmodified	_EVPNKIINR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.8192749023438	2	541.819473	1081.62439	-0.10661	-5.7765E-05	-0.021056	-1.1408E-05	-0.12767	-6.9173E-05	541.8194000077663	28.772	0.69973	28.772	28.552	29.252	0					76	38	3	0	0	0	0.14091	3	3952	3911;3952;4006		25.399	13.159	1	132920			3334	3920	2306	2320	4299;4300;4301	4300					0.08684523117221943
EVPNKIINR	9	Unmodified	_EVPNKIINR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.8193969726562	2	541.819473	1081.62439	-0.016483	-8.931E-06	0.025574	1.3856E-05	0.0090904	4.9253E-06	541.8193761135564	28.715	0.51252	28.794	28.595	29.107	0.078287					73	33	3	0	0	0	0.14091	2	3804	3763;3804		25.399	13.759	1	134810			3335	3920	2306	2320	4302;4303	4303					0.08684523117221943
EVQDLHLAQR	10	Unmodified	_EVQDLHLAQR_					0	0	0		nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant	nc|ENSG00000125505|Q96N66-2|MBOAT7	nc|ENSG00000125505|Q96N66-2|MBOAT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5506286621094	3	403.550921	1207.63093	0.14817	5.9795E-05	0.25423	0.00010259	0.4024	0.00016239	403.5508501493276	33.335	0.68285	33.335	33.2	33.883	0					50	24	3	0	0	0	0.44938	1	5280	5280		4.7159	2.632	1	61081			3336	2295	2307	2321	4304	4304					0.03542416277923621
EVQITRQGLR	10	Unmodified	_EVQITRQGLR_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8086547851562	2	600.346386	1198.67822	0.41653	0.00025006	-3.7482	-0.0022502	-3.3317	-0.0020002	600.3440430517394	62.824	0.27658	62.896	62.777	63.054	0.072701					14	10	2	0	0	0	0.30844	1	14081	14081		19.362	0.98885	1	151430	+		3337	11146	2308	2322	4305	4305					0.0868269554894141
EVQNVDDQHL	10	Unmodified	_EVQNVDDQHL_					0	0	0		TFAP2C|p.Y240Lfs*7|1|0.15|ENSG00000087510|chr20:56633483-56633484|-/T|frameshift_variant;nc|ENSG00000087510|Q92754-2|TFAP2C;ENSG00000087510|ENST00000201031|TFAP2C	TFAP2C|p.Y240Lfs*7|1|0.15|ENSG00000087510|chr20:56633483-56633484|-/T|frameshift_variant	TFAP2C|p.Y240Lfs*7|1|0.15|ENSG00000087510|chr20:56633483-56633484|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3397827148438	2	598.780741	1195.54693	0.31638	0.00018945	-2.8774	-0.0017229	-2.561	-0.0015335	598.7792829666151	76.587	0.24697	76.626	76.469	76.716	0.03923					18	8	3	0	0	0	0.31532	1	18255	18255		13.042	2.9685	1	92238			3338	1003	2309	2323	4306	4306					-0.043021596096195935
EVREGDHSFI	10	Unmodified	_EVREGDHSFI_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.7760009765625	2	594.785827	1187.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.175	1	86.2	85.7	86.7	0.025169								0	0	0	0.33565	1	21185	21185		5.2969	0.96765	1				3339	4576	2310	2324	4307	4307					-0.029175518843885584
EVSDVEIITR	10	Unmodified	_EVSDVEIITR_					0	0	0		ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	ENST00000542613.5_1_9:95085577-95087599:-|nuORF	ENST00000542613.5_1_9:95085577-95087599:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8120727539062	2	580.81151	1159.60847	0.48944	0.00028427	0.038991	2.2646E-05	0.52843	0.00030692	580.8116603542504	47.653	0.37824	47.653	47.499	47.877	0					19	12	2	0	0	0	0.15224	2	9599	9599;9649		39.213	20.84	1	122000			3340	5333	2311	2325	4308;4309	4308					0.03504772089650032
EVSDVEIITR	10	Unmodified	_EVSDVEIITR_					0	0	0		ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	ENST00000542613.5_1_9:95085577-95087599:-|nuORF	ENST00000542613.5_1_9:95085577-95087599:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.8119506835938	2	580.81151	1159.60847	0.68587	0.00039836	-0.016284	-9.4579E-06	0.66959	0.0003889	580.8115662853846	47.564	0.38474	47.645	47.459	47.844	0.080875					23	15	2	0	0	0	0.32754	1	9446	9446		19.626	12.524	1	116440			3341	5333	2311	2325	4310	4310					0.03504772089650032
EVSETLVQR	9	Unmodified	_EVSETLVQR_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.756591796875	2	530.785296	1059.55604	0.088087	4.6755E-05	-0.40926	-0.00021723	-0.32118	-0.00017048	530.7849242440017	34.903	0.3339	34.903	34.754	35.088	0					26	11	3	0	0	0	0.24366	1	5783	5783		13.042	6.3193	1	86177			3342	1098	2312	2326	4311	4311					0.028642337467317702
EVSETLVQR	9	Unmodified	_EVSETLVQR_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7564697265625	2	530.785296	1059.55604	0.177	9.3949E-05	-0.44509	-0.00023625	-0.26809	-0.0001423	530.784965022738	34.848	0.32209	34.924	34.753	35.075	0.076244					22	12	2	0	0	0	0.1789	1	5643	5643		29.082	8.628	1	80575			3343	1098	2312	2326	4312	4312					0.028642337467317702
EVSFNLRKP	9	Unmodified	_EVSFNLRKP_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7620849609375	2	545.306198	1088.59784	0.31552	0.00017206	-0.14559	-7.9391E-05	0.16993	9.2666E-05	545.3061125479769	38.714	0.31572	38.801	38.652	38.967	0.08688					20	11	2	0	0	0	0.25579	1	6763	6763		4.3292	0	1	37409	+		3344	8816	2313	2327	4313	4313					0.057088342259021374
EVSPPVTVR	9	Unmodified	_EVSPPVTVR_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2796936035156	2	492.279649	982.544745	0.36429	0.00017933	-0.14733	-7.2529E-05	0.21695	0.0001068	492.27952052769274	38.1	0.81481	38.1	37.612	38.426	0					67	27	3	0	0	0	0.064247	3	6684	6633;6684;6726		40.239	11.158	1	272980			3345	3724	2314	2328	4314;4315;4316	4315					0.05277456443241135
EVSPPVTVR	9	Unmodified	_EVSPPVTVR_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.27972412109375	2	492.279649	982.544745	0.34802	0.00017132	0.037701	1.8559E-05	0.38572	0.00018988	492.2796196539735	37.949	0.80445	38.033	37.628	38.432	0.084476					70	28	3	0	0	0	0.081383	2	6551	6499;6551		36.506	9.6156	1	228500			3346	3724	2314	2328	4317;4318	4318					0.05277456443241135
EVSVATTTK	9	Unmodified	_EVSVATTTK_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.2554626464844	2	468.25584	934.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.689	1	77.689	77.189	78.189	0								0	0	0	0.25992	1	18759	18759		7.2892	0	1				3347	951	2315	2329	4319	4319					0.027257574523787298
EVTDVDSVVGR	11	Unmodified	_EVTDVDSVVGR_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8001098632812	2	588.298767	1174.58298	0.044493	2.6175E-05	-0.30843	-0.00018145	-0.26394	-0.00015527	588.2985887715083	43.609	0.55489	43.609	43.358	43.913	0					48	20	4	0	0	0	0.052232	3	8375	8375;8425;8433		57.108	41.859	1	180250			3348	296	2316	2330	4320;4321;4322	4320					0.002672975672339817
EVTDVDSVVGR	11	Unmodified	_EVTDVDSVVGR_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.298828125	2	588.298767	1174.58298	0.24278	0.00014283	-0.032386	-1.9052E-05	0.2104	0.00012378	588.298770569168	43.538	0.36501	43.627	43.481	43.846	0.088924					31	13	3	0	0	0	0.14202	2	8220	8220;8277		39.213	23.064	1	146390			3349	296	2316	2330	4323;4324	4323					0.002672975672339817
EVTKFQLTF	9	Unmodified	_EVTKFQLTF_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3145751953125	2	556.802957	1111.59136	0.61905	0.00034469	-0.34052	-0.0001896	0.27853	0.00015509	556.8027438549516	62.836	0.46245	62.908	62.659	63.122	0.072701					28	17	2	0	0	0	0.18934	1	14091	14091		28.495	10.121	1	112290			3350	2964	2317	2331	4325	4325					0.04002896274505474
EVTPVTGASLR	11	Unmodified	_EVTPVTGASLR_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3129272460938	2	565.31422	1128.61389	-0.38676	-0.00021864	0.12052	6.8133E-05	-0.26624	-0.00015051	565.3143579660386	40.819	0.37296	40.819	40.623	40.996	0					21	12	2	0	0	0	0.28608	3	7528	7522;7528;7575		19.626	7.3853	1	64422			3351	3771	2318	2332	4326;4327;4328	4327					0.054724956721202034
EVTPVTGASLR	11	Unmodified	_EVTPVTGASLR_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3139038085938	2	565.31422	1128.61389	-0.22175	-0.00012536	0.25227	0.00014261	0.030516	1.7251E-05	565.3142998060899	40.71	0.38517	40.8	40.626	41.011	0.089642					31	14	3	0	0	0	0.31995	1	7381	7381		15.739	3.498	1	55862			3352	3771	2318	2332	4329	4329					0.054724956721202034
EVTRILDGK	9	Unmodified	_EVTRILDGK_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7982177734375	2	515.798206	1029.58186	-0.053969	-2.7837E-05	0.285	0.000147	0.23103	0.00011917	515.7982261784767	31.518	0.85497	31.518	31.305	32.16	0					90	36	4	0	0	0	0.054729	1	4761	4761		42.312	7.3804	1	187090			3353	3116	2319	2333	4330	4330					0.06825127989009161
EVTRILDGK	9	Unmodified	_EVTRILDGK_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.798095703125	2	515.798206	1029.58186	-0.029972	-1.546E-05	0.21802	0.00011245	0.18805	9.6995E-05	515.798201298327	31.45	0.75911	31.523	31.346	32.105	0.073782					85	35	3	0	0	0	0.23478	1	4590	4590		17.113	3.2068	1	192200			3354	3116	2319	2333	4331	4331					0.06825127989009161
EVVDIFQVVK	10	Unmodified	_EVVDIFQVVK_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7879028320312	2	588.337164	1174.65977	0.65151	0.00038331	0.1581	9.3017E-05	0.80961	0.00047632	588.3379181721812	70.778	0.1226	70.778	70.708	70.83	0					6	4	2	0	0	0	0.31595	1	16643	16643		11.495	1.3441	1	67090			3355	903	2320	2334	4332	4332					0.07943140854376907
EVVDLLLAR	9	Unmodified	_EVVDLLLAR_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000506930.2_1_5:139884419-139889237:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.3109741210938	2	514.310949	1026.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.891	1	65.891	65.391	66.391	0								0	0	0	0.20678	1	15157	15157		17.113	2.2746	1				3356	2536	2321	2335	4333	4333					0.09510602511431898
EVVEQGITR	9	Unmodified	_EVVEQGITR_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7984008789062	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.439	1	31.439	30.939	31.939	0								0	0	0	0.24291	1	4725	4725		10.8	1.4164	1				3357	2588	2322	2336	4334	4334					0.03188251092274186
EVVIYVVER	9	Unmodified	_EVVIYVVER_					0	0	0		ENST00000514313.1_1_4:77053589-77055413:-|nuORF;nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.316162109375	2	553.316232	1104.61791	0.65052	0.00035994	-0.34344	-0.00019003	0.30707	0.00016991	553.3160102651158	53.984	0.58841	53.984	53.783	54.371	0					39	20	3	0	0	0	0.00090591	2	11511	11511;11557		125.04	88.911	1	451580			3358	2933	2323	2337	4335;4336	4335					0.06978585165848017
EVVIYVVER	9	Unmodified	_EVVIYVVER_					0	0	0		ENST00000514313.1_1_4:77053589-77055413:-|nuORF;nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3164672851562	2	553.316232	1104.61791	0.69148	0.00038261	-0.23734	-0.00013133	0.45414	0.00025128	553.3159857605278	53.939	0.6869	54.004	53.761	54.448	0.065128					49	25	3	0	0	0	0.002259	1	11366	11366		114.19	72.347	1	373210			3359	2933	2323	2337	4337	4337					0.06978585165848017
EVVRLLVTR	9	Unmodified	_EVVRLLVTR_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.844970703125	2	542.84549	1083.67643	-0.092098	-4.9995E-05	0.017953	9.7455E-06	-0.074146	-4.025E-05	542.84543321473	43.701	0.63592	43.701	43.544	44.18	0					38	22	2	0	0	0	0.26104	1	8477	8477		11.495	8.2134	1	221900			3360	5560	2324	2338	4338	4338					0.1379368653099391
EVVRLLVTR	9	Unmodified	_EVVRLLVTR_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.84549	1083.67643	0.059651	3.2381E-05	-0.079522	-4.3168E-05	-0.019871	-1.0787E-05	542.8454412873276	43.61	0.53183	43.699	43.532	44.064	0.088924	-0.00069236	-7.3263E-05	NaN	11.495	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207430			3361	5560	2324	2338							0.1379368653099391
EVVSGVVSK	9	Unmodified	_EVVSGVVSK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.26055908203125	2	452.260925	902.507297	-0.0044718	-2.0224E-06	-0.50907	-0.00023023	-0.51354	-0.00023226	452.2605325041686	30.361	0.58797	30.361	30.169	30.757	0					80	31	4	0	0	0	0.095436	3	4416	4375;4416;4460		33.445	10.709	1	305640			3362	4617	2325	2339	4339;4340;4341	4340					0.05214365177619129
EVVSGVVSK	9	Unmodified	_EVVSGVVSK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.2606201171875	2	452.260925	902.507297	-0.1892	-8.5567E-05	-0.26146	-0.00011825	-0.45066	-0.00020381	452.2606359887413	30.317	0.58869	30.393	30.211	30.8	0.075403					82	37	4	0	0	0	0.12515	3	4289	4245;4289;4330		27.223	10.11	1	249340			3363	4617	2325	2339	4342;4343;4344	4343					0.05214365177619129
EVVTEVVSR	9	Unmodified	_EVVTEVVSR_					0	0	0		ENST00000485351.1_1_10:44141510-44141681:-|nuORF;ENST00000395797.1_1_10:44140239-44144057:-|nuORF	ENST00000485351.1_1_10:44141510-44141681:-|nuORF	ENST00000485351.1_1_10:44141510-44141681:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2823791503906	2	509.282389	1016.55022	0.29668	0.00015109	-0.39284	-0.00020006	-0.096157	-4.8971E-05	509.2822190846704	38.11	0.46715	38.11	37.929	38.396	0					32	15	3	0	0	0	0.1755	1	6718	6718		32.037	13.891	1	101140			3364	6337	2326	2340	4345	4345					0.04261135235060465
EVVTEVVSR	9	Unmodified	_EVVTEVVSR_					0	0	0		ENST00000485351.1_1_10:44141510-44141681:-|nuORF;ENST00000395797.1_1_10:44140239-44144057:-|nuORF	ENST00000485351.1_1_10:44141510-44141681:-|nuORF	ENST00000485351.1_1_10:44141510-44141681:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2820739746094	2	509.282389	1016.55022	0.31484	0.00016034	-0.61398	-0.00031269	-0.29914	-0.00015235	509.28205721166853	38.02	0.4263	38.105	37.901	38.328	0.084476					34	15	3	0	0	0	0.20966	1	6561	6561		17.443	8.6972	1	72712			3365	6337	2326	2340	4346	4346					0.04261135235060465
EVWKKNES	8	Unmodified	_EVWKKNES_					0	0	0			REV__ENSG00000172578|ENST00000341319|KLHL6	REV__ENSG00000172578|ENST00000341319|KLHL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.26263427734375	2	510.261456	1018.50836	0.23038	0.00011755	1.8772	0.00095786	2.1076	0.0010754	510.26252414136127	90.305	0.29172	90.305	90.231	90.523	0					12	10	2	0	0	0	0.53494	1	22624	22624		4.756	0.42677	1	58391	+		3366	10294	2327	2341	4347	4347					-0.00015420453473780071
EVWPEVESL	9	Unmodified	_EVWPEVESL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2687377929688	2	544.268947	1086.52334	0.3599	0.00019588	-1.068	-0.00058126	-0.70806	-0.00038537	544.2688010476467	76.587	0.3931	76.587	76.445	76.838	0					19	13	3	0	0	0	0.047633	1	18432	18432		43.858	19.838	1	125300			3367	4386	2328	2342	4348	4348					-0.01645973376139409
EVWPEVESL	9	Unmodified	_EVWPEVESL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	544.268947	1086.52334	0.39918	0.00021726	-0.35892	-0.00019535	0.040266	2.1915E-05	544.269006630611	76.536	0.29259	76.575	76.441	76.734	0.039238	-0.0059904	0.00050873	NaN	43.858	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68768			3368	4386	2328	2342							-0.01645973376139409
EVYDIAFSR	9	Unmodified	_EVYDIAFSR_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2748413085938	2	550.274564	1098.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.845	1	54.911	54.411	55.411	0.065128								0	0	0	0.27152	1	11654	11654		4.897	0.56777	1				3369	2794	2329	2343	4349	4349					-0.010751512820206699
EVYPEARKK	9	Unmodified	_EVYPEARKK_					0	0	0		ENST00000434334.1_1_2:182559249-182559624:+|nuORF;nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	ENST00000434334.1_1_2:182559249-182559624:+|nuORF	ENST00000434334.1_1_2:182559249-182559624:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.311279296875	2	560.31148	1118.60841	-0.31499	-0.00017649	0.0032743	1.8346E-06	-0.31171	-0.00017466	560.3114122657479	17.02	0.46635	17.02	16.878	17.345	0					129	57	3	0	0	0	0.27929	2	854	829;854		9.3831	2.66	1	78027			3370	3429	2330	2344	4350;4351	4351					0.05384816880314247
EVYPEARKK	9	Unmodified	_EVYPEARKK_					0	0	0		ENST00000434334.1_1_2:182559249-182559624:+|nuORF;nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	ENST00000434334.1_1_2:182559249-182559624:+|nuORF	ENST00000434334.1_1_2:182559249-182559624:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.3115844726562	2	560.31148	1118.60841	0.33539	0.00018792	-0.43593	-0.00024426	-0.10054	-5.6333E-05	560.3111209020874	16.999	0.39544	17.077	16.93	17.325	0.077808					111	49	3	0	0	0	0.11547	2	778	753;778		29.082	10.935	1	130760			3371	3429	2330	2344	4352;4353	4353					0.05384816880314247
EVYTKQGF	8	Unmodified	_EVYTKQGF_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2740783691406	2	486.245275	970.475997	0.21336	0.00010374	1.184	0.0005757	1.3973	0.00067944	486.24618074112084	74.715	0.18825	74.715	74.579	74.767	0					10	6	2	0	0	0	0.33807	1	17845	17845		28.487	10.352	1	66573			3372	1215	2331	2345	4354	4354					-0.010422078564715775
EWDLRDIDF	9	Unmodified	_EWDLRDIDF_					0	0	0		nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.768310546875	2	604.782753	1207.55095	0.75927	0.0004592	0.30932	0.00018707	1.0686	0.00064627	604.7828168168628	70.43	0.61667	70.43	70.271	70.888	0					33	22	2	0	0	0	0.29576	1	16645	16645		7.2892	1.0834	1	77568			3373	7626	2332	2346	4355	4355					-0.04452070115917195
EWDNDFEDIRS	11	Unmodified	_EWDNDFEDIRS_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.869873046875	3	475.868756	1424.58444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.343	1	15.415	14.915	15.915	0.072399								0	0	0	0.34096	1	479	479		0.40827	0.24894	1				3374	656	2333	2347	4356	4356					-0.11087113134658466
EWDQVTVYL	9	Unmodified	_EWDQVTVYL_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.782470703125	2	576.782222	1151.54989	0.4721	0.0002723	0.19378	0.00011177	0.66587	0.00038406	576.7822957870692	83.189	0.65002	83.189	82.9	83.55	0					38	17	3	0	0	0	0.14444	1	20429	20429		24.991	6.8446	1	318510			3375	320	2334	2348	4357	4357					-0.019822844848022214
EWDQVTVYL	9	Unmodified	_EWDQVTVYL_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.7822875976562	2	576.782222	1151.54989	0.31334	0.00018073	0.12119	6.9903E-05	0.43453	0.00025063	576.7823390248528	83.19	0.57239	83.212	82.987	83.56	0.021744					33	19	2	0	0	0	0.10543	1	20270	20270		31.268	7.2478	1	320160			3376	320	2334	2348	4358	4358					-0.019822844848022214
EWEERRRQN	9	Unmodified	_EWEERRRQN_					0	0	0		ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|522|52.63|0.0|22.33|+|ENST00000643617|CCDC9,CCDC9	ENSG00000105321|ENST00000221922|CCDC9	ENSG00000105321|ENST00000221922|CCDC9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88201904296875	3	434.881441	1301.62249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.022	1	43.022	42.522	43.522	0								0	0	0	0.2941	1	8205	8205		0.23584	0.076522	1				3377	157	2335	2349	4359	4359					-0.01625137638666274
EWEHKRNLF	9	Unmodified	_EWEHKRNLF_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.8087768554688	2	629.820004	1257.62546	0.49618	0.0003125	4.3416	0.0027345	4.8378	0.003047	630.324398187886	71.098	0.20956	71.157	71.108	71.318	0.058578					10	7	2	0	0	0	0.31668	1	16626	16626		7.2892	0.56607	1	68973	+		3378	8780	2336	2350	4360	4360					0.006947374861283606
EWHCRRRV	8	Unmodified	_EWHCRRRV_					0	0	0		nc|ENSG00000179846|Q17RQ9|NKPD1;ENSG00000179846|ENST00000686631|NKPD1	nc|ENSG00000179846|Q17RQ9|NKPD1	nc|ENSG00000179846|Q17RQ9|NKPD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2951049804688	2	571.293434	1140.57231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.579	1	29.657	29.157	30.157	0.078287								0	0	0	0.38822	1	4051	4051		0.69038	0	1				3379	4790	2337	2351	4361	4361					0.007650812224710535
EWHHLLIEL	9	Unmodified	_EWHHLLIEL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.323486328125	2	595.321848	1188.62914	0.39947	0.00023781	2.5361	0.0015098	2.9356	0.0017476	595.3232024638821	55.072	0.3979	55.137	54.955	55.353	0.065128					34	15	3	0	0	0	0.30005	1	11763	11763		6.7232	0.51738	1	244710			3380	817	2338	2352	4362	4362					0.04237407260029613
EWIPLAWKW	9	Unmodified	_EWIPLAWKW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2;GTF3C2|p.A409Qfs*15|1|0.06|ENSG00000115207|chr2:27336328-27336328|C/-|frameshift_variant	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.8291015625	2	614.829309	1227.64407	-0.19447	-0.00011957	-0.55069	-0.00033858	-0.74516	-0.00045815	614.8292571433576	86.325	0.40424	86.325	86.125	86.529	0					25	14	2	0	0	0	0.078774	1	21396	21396		47.749	30.636	1	170280			3381	1884	2339	2353	4363	4363					0.03934899127989411
EWIPLAWKW	9	Unmodified	_EWIPLAWKW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2;GTF3C2|p.A409Qfs*15|1|0.06|ENSG00000115207|chr2:27336328-27336328|C/-|frameshift_variant	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.829309	1227.64407	0.019933	1.2255E-05	-0.22276	-0.00013696	-0.20283	-0.0001247	614.829416334768	86.241	0.36447	86.267	86.117	86.481	0.025169	-0.029059	0.00018595	NaN	47.749	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149980			3382	1884	2339	2353							0.03934899127989411
EWLDFVLFF	9	Unmodified	_EWLDFVLFF_					0	0	0			REV__nc|ENSG00000164776|Q16816-2|PHKG1	REV__nc|ENSG00000164776|Q16816-2|PHKG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.5670471191406	3	405.874342	1214.6012	-0.0079498	-3.2266E-06	-4.1431	-0.0016816	-4.1511	-0.0016848	405.87183845209	45.23	0.84039	45.23	44.689	45.53	0					50	29	3	0	0	0	0.25851	1	8836	8836		2.4985	0.41248	1	47018	+		3383	12833	2340	2354	4364	4364					0.0024808427988318726
EWLNKFNTF	9	Unmodified	_EWLNKFNTF_					0	0	0		ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7999877929688	2	599.798206	1197.58186	0.69449	0.00041655	-0.43177	-0.00025898	0.26272	0.00015758	599.7980691295076	65.587	0.31541	65.587	65.446	65.761	0					19	11	2	0	0	0	0.31086	2	15064	15064;15068		5.2969	2.7194	1	66277			3384	2817	2341	2355	4365;4366	4365					-0.009028720110109134
EWLTEASVI	9	Unmodified	_EWLTEASVI_					0	0	0		ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.271484375	2	524.27149	1046.52843	0.24407	0.00012796	-0.084538	-4.4321E-05	0.15953	8.3636E-05	524.7726738028613	87.315	0.29264	87.315	87.141	87.433	0					19	10	2	0	0	0	0.26684	1	21685	21685		10.824	0	1	89478			3385	6982	2342	2356	4367	4367					0.00702330486478786
EWLWQYRF	8	Unmodified	_EWLWQYRF_					0	0	0		VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant	VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant	VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.20355224609375	3	409.869703	1226.58728	0.36433	0.00014933	-0.3048	-0.00012493	0.059527	2.4398E-05	409.8695169495003	59.308	1.1412	59.308	59.01	60.152	0					95	43	3	0	0	0	0.53614	1	13106	13106		3.9444	1.4459	1	247010			3386	13766	2343	2357	4368	4368					-0.01695148428552784
EWNLYYPMQL	10	Unmodified	_EWNLYYPMQL_					0	0	0		nc|ENSG00000130159|Q9BQ95-3|ECSIT;ENSG00000130159|ENST00000270517|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.8806457519531	3	452.88128	1355.62201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.229	1	78.259	77.759	78.759	0.030159								0	0	0	0.33952	1	18765	18765		0.77653	0.14971	1				3387	2454	2344	2358	4369	4369					-0.04157693402771656
EWNMMAYD	8	Unmodified	_EWNMMAYD_					0	0	0		ENSG00000132970|ENST00000335327|WASF3	ENSG00000132970|ENST00000335327|WASF3	ENSG00000132970|ENST00000335327|WASF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.1994018554688	2	530.199153	1058.38375	-0.10037	-5.3216E-05	0.38578	0.00020454	0.28541	0.00015133	530.199452452972	31.672	0.33102	31.672	31.517	31.848	0					19	13	2	0	0	0	0.53894	1	4805	4805		2.0598	0.21551	1	19257			3388	2608	2345	2359	4370	4370					-0.14310377256674656
EWNMMAYD	8	Unmodified	_EWNMMAYD_					0	0	0		ENSG00000132970|ENST00000335327|WASF3	ENSG00000132970|ENST00000335327|WASF3	ENSG00000132970|ENST00000335327|WASF3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	530.199153	1058.38375	-0.015854	-8.4056E-06	0.11585	6.1425E-05	0.099999	5.3019E-05	530.1992488679666	31.616	0.33891	31.69	31.515	31.854	0.07378	0.0088613	-0.0001663	NaN	2.0598	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14347			3389	2608	2345	2359							-0.14310377256674656
EWPFVGTER	9	Unmodified	_EWPFVGTER_					0	0	0			REV__ENST00000407193.5_1_5:149829167-149829215:-|nuORF	REV__ENST00000407193.5_1_5:149829167-149829215:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7905883789062	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.387	1	34.387	33.887	34.887	0								0	0	0	0.24643	1	5602	5602		10.074	0.6908	1		+		3390	11768	2346	2360	4371	4371					-0.0200773156213927
EWPKHWPTF	9	Unmodified	_EWPKHWPTF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.869873046875	3	409.869703	1226.58728	0.36433	0.00014933	-0.3048	-0.00012493	0.059527	2.4398E-05	409.8695169495003	59.308	1.1412	59.308	59.01	60.152	0					95	43	3	0	0	0	0.31926	1	13161	13161		4.1895	2.1035	1	247010			3391	925	2347	2361	4372	4372					-0.01695148428552784
EWPKHWPTF	9	Unmodified	_EWPKHWPTF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.3019409179688	2	614.300916	1226.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.394	1	59.394	58.894	59.894	0								0	0	0	0.25175	1	13171	13171		8.7454	2.0222	1				3392	925	2347	2361	4373	4373					-0.01695148428552784
EWPKHWPTF	9	Unmodified	_EWPKHWPTF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.8698425292969	3	409.869703	1226.58728	0.00060767	2.4907E-07	-0.0084714	-3.4722E-06	-0.0078637	-3.2231E-06	409.8696665960778	59.204	1.4553	59.276	58.971	60.426	0.072338					87	56	3	0	0	0	0.33371	1	13026	13026		2.2828	2.2828	1	409120			3393	925	2347	2361	4374	4374					-0.01695148428552784
EWPKHWPTF	9	Unmodified	_EWPKHWPTF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	409.869703	1226.58728	0.00060767	2.4907E-07	-0.0084714	-3.4722E-06	-0.0078637	-3.2231E-06	409.8696665960778	59.204	1.4553	59.276	58.971	60.426	0.072338	-0.016117	0.00018395	NaN	4.1895	87	56	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409120			3394	925	2347	2361							-0.01695148428552784
EWPPFVVTL	9	Unmodified	_EWPPFVVTL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552809-16553013:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.3126831054688	2	544.294768	1086.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.194	1	98.194	97.694	98.694	0								0	0	0	0.26267	1	24997	24997		6.7232	2.1943	1				3395	1075	2348	2362	4375	4375					0.03515815108426068
EWRRIGLG	8	Unmodified	_EWRRIGLG_					0	0	0			REV__ENST00000392818.7_1_7:150779672-150779920:-|nuORF	REV__ENST00000392818.7_1_7:150779672-150779920:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.25006103515625	2	493.780151	985.545748	0.39756	0.00019631	-2.0738	-0.001024	-1.6762	-0.00082768	493.77917971511727	37.83	0.48101	37.914	37.684	38.165	0.084476					32	16	3	0	0	0	0.3576	1	6578	6578		2.5775	0.27475	1	57040	+		3396	11696	2349	2363	4376	4376					0.05239715602806427
EWRVGRWPR	9	Unmodified	_EWRVGRWPR_					0	0	0		ENST00000456948.5_1_7:26241480-26241672:+|nuORF	ENST00000456948.5_1_7:26241480-26241672:+|nuORF	ENST00000456948.5_1_7:26241480-26241672:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.335693359375	2	621.336156	1240.65776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.93	1	103.97	103.47	104.47	0.03791								0	0	0	0.2927	1	26560	26560		0.52476	0.066424	1				3397	6591	2350	2364	4377	4377					0.04705569679777
EWSHSRACTVL	11	Unmodified	_EWSHSRACTVL_					0	0	0			REV__ENST00000554116.5_1_16:89989809-89998148:+|nuORF	REV__ENST00000554116.5_1_16:89989809-89998148:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.8090209960938	2	644.808779	1287.60301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.34	1	45.34	44.84	45.84	0								0	0	0	0.33436	1	8905	8905		2.7352	0	1		+		3398	12452	2351	2365	4378	4378					-0.02929229973801739
EWSPEFVPC	9	Unmodified	_EWSPEFVPC_					0	0	0			REV__ENSG00000073614|ENST00000399788|KDM5A	REV__ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3043212890625	2	547.236593	1092.45863	0.11936	6.5317E-05	-0.87483	-0.00047874	-0.75548	-0.00041342	547.2361031239805	35.138	0.57993	35.138	34.754	35.334	0					26	20	2	0	0	0	0.25809	1	5743	5743		2.3027	0	1	21467	+		3399	8177	2352	2366	4379	4379					-0.08389871453778142
EWTYQEDN	8	Unmodified	_EWTYQEDN_					0	0	0			REV__ENST00000436135.1_1_1:158493653-158493989:+|nuORF	REV__ENST00000436135.1_1_1:158493653-158493989:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7125854492188	2	542.714536	1083.41452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.934	1	37.934	37.434	38.434	0								0	0	0	0.38822	1	6670	6670		2.0598	0.21551	1		+		3400	11864	2353	2367	4380	4380					-0.12385184346430833
EWVPWEEL	8	Unmodified	_EWVPWEEL_					0	0	0		ENSG00000136159|ENST00000258662|NUDT15	ENSG00000136159|ENST00000258662|NUDT15	ENSG00000136159|ENST00000258662|NUDT15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2587280273438	2	544.258382	1086.50221	0.25162	0.00013695	0.18811	0.00010238	0.43973	0.00023933	544.258550031525	16.143	0.26891	16.221	16.131	16.4	0.077806					49	34	2	0	0	0	0.54097	1	616	616		0.69038	0	1	17183			3401	2774	2354	2368	4381	4381					-0.037579386849984076
EWWTWIDYNRF	11	Unmodified	_EWWTWIDYNRF_					0	0	0		nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B;ENSG00000198874|ENST00000359626|TYW1	nc|ENSG00000277149|Q6NUM6-2|TYW1B	nc|ENSG00000277149|Q6NUM6-2|TYW1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.759521484375	3	539.249131	1614.72556	0.44485	0.00023989	-3.3208	-0.0017907	-2.8759	-0.0015508	539.2472185952234	61.007	0.47558	61.007	60.805	61.28	0					25	16	2	0	0	0	0.31096	1	13653	13653		0.50596	0	1	135200			3402	5424	2355	2369	4382	4382					-0.05721069970741155
EWWVWTHWF	9	Unmodified	_EWWVWTHWF_					0	0	0		ENST00000367521.5_1_1:183906707-183906932:-|nuORF	ENST00000367521.5_1_1:183906707-183906932:-|nuORF	ENST00000367521.5_1_1:183906707-183906932:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.8739929199219	3	459.545219	1375.61383	-0.49323	-0.00022666	-1.3581	-0.00062412	-1.8514	-0.00085079	459.54481199255184	41.866	0.17926	41.956	41.869	42.048	0.089764					8	6	2	0	0	0	0.25851	1	7711	7711		2.4985	0	1	32098			3403	6176	2356	2370	4383	4383					-0.05895459537214265
EYAAGPFALF	10	Unmodified	_EYAAGPFALF_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2684936523438	2	543.26875	1084.52295	0.5524	0.0003001	-0.90828	-0.00049344	-0.35587	-0.00019334	543.2683386205817	92.303	0.49451	92.303	92.037	92.531	0					34	18	2	0	0	0	0.012345	2	23209	23165;23209		74.423	44.198	1	202100			3404	5427	2357	2371	4384;4385	4385					-0.015933483053458986
EYAAGPFALF	10	Unmodified	_EYAAGPFALF_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2691040039062	2	543.26875	1084.52295	0.51622	0.00028045	-0.46334	-0.00025172	0.052884	2.873E-05	543.268330287762	92.217	0.53418	92.254	92.018	92.552	0.03653					43	18	3	0	0	0	0.060429	1	23048	23048		54.774	36.639	1	127260			3405	5427	2357	2371	4386	4386					-0.015933483053458986
EYAEWLRNHF	10	Unmodified	_EYAEWLRNHF_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.2504577636719	3	455.550921	1363.63093	0.31865	0.00014516	-0.12418	-5.6569E-05	0.19447	8.8591E-05	455.5508305838557	58.151	0.24908	58.151	57.968	58.217	0					18	8	3	0	0	0	0.31748	1	12781	12781		7.0371	4.6023	1	113540			3406	3240	2358	2372	4387	4387					-0.03633583722057665
EYAEWLRNHF	10	Unmodified	_EYAEWLRNHF_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	455.550921	1363.63093	0.13391	6.1002E-05	0.2161	9.8446E-05	0.35001	0.00015945	455.5509792557832	58.229	0.20318	58.3	58.184	58.387	0.070477	0.074481	0.00019403	NaN	7.0371	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89405			3407	3240	2358	2372							-0.03633583722057665
EYAHLFEVF	9	Unmodified	_EYAHLFEVF_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.779541015625	2	577.779482	1153.54441	0.50939	0.00029431	0.24878	0.00014374	0.75817	0.00043805	577.7795709443553	75.04	0.6823	75.04	74.767	75.45	0					59	25	3	0	0	0	0.0043613	2	17916	17916;17968		96.285	21.862	1	1367800			3408	2497	2359	2373	4388;4389	4388					-0.026219632766242285
EYAHLFEVF	9	Unmodified	_EYAHLFEVF_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7801513671875	2	577.779482	1153.54441	0.45191	0.0002611	0.3993	0.00023071	0.85121	0.00049181	577.7797852376227	74.948	0.71366	74.992	74.812	75.525	0.044037					60	25	3	0	0	0	0.0087214	2	17796	17751;17796		71.134	13.662	1	1181200			3409	2497	2359	2373	4390;4391	4391					-0.026219632766242285
EYAKIHDLL	9	Unmodified	_EYAKIHDLL_					0	0	0		nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318	nc|ENSG00000171467|Q5VUA4-2|ZNF318	nc|ENSG00000171467|Q5VUA4-2|ZNF318	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7818603515625	2	551.300581	1100.58661	0.52479	0.00028931	-0.87254	-0.00048103	-0.34776	-0.00019172	551.3002031493473	47.326	0.43966	47.326	47.144	47.583	0					30	14	3	0	0	0	0.1789	1	9504	9504		29.082	17.441	1	173660			3410	4438	2360	2374	4392	4392					0.04034012131774034
EYASLIGWKF	10	Unmodified	_EYASLIGWKF_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.3158569335938	2	607.316232	1212.61791	0.60441	0.00036707	-0.096967	-5.8889E-05	0.50744	0.00030818	607.316131864963	76.255	0.74132	76.255	76.097	76.838	0					53	29	3	0	0	0	0.0012232	1	18312	18312		110.55	86.532	1	1986400			3411	2894	2361	2375	4393	4393					0.020105851658399843
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.8104858398438	2	518.289682	1034.56481	-0.0011193	-5.8012E-07	1.3341	0.00069146	1.333	0.00069088	518.2905100042208	90.559	0.48473	90.593	90.422	90.907	0.034065					49	19	3	0	0	0	0.037903	1	22524	22524		57.722	2.9484	1	354110			3412	2723	2362	2376	4394	4394					0.048912073832070746
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	518.289682	1034.56481	0.32594	0.00016893	1.2313	0.00063817	1.5572	0.00080711	518.2902618895387	90.598	0.44525	90.598	90.439	90.885	0	0.0025752	-4.764E-05	NaN	57.722	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402770			3413	2723	2362	2376							0.048912073832070746
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7978515625	2	557.798206	1113.58186	0.26091	0.00014553	-0.22723	-0.00012675	0.033673	1.8783E-05	557.7979233503657	35.631	0.51006	35.631	35.537	36.047	0					31	19	2	0	0	0	0.24273	1	5989	5989		13.615	5.4593	1	67651			3414	622	2363	2377	4395	4395					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7982177734375	2	557.798206	1113.58186	0.36261	0.00020226	-0.4628	-0.00025815	-0.10019	-5.5888E-05	557.7979618484952	35.613	0.47687	35.692	35.513	35.99	0.078827					34	17	4	0	0	0	0.26705	2	5851	5851;5899		10.8	5.0677	1	67603			3415	622	2363	2377	4396;4397	4396					0.029611279890104925
EYDEHFPEI	9	Unmodified	_EYDEHFPEI_					0	0	0		ENST00000481096.6_1_X:51808851-51809606:-|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3345336914062	2	589.753661	1177.49277	0.0032719	1.9296E-06	-0.074735	-4.4075E-05	-0.071463	-4.2145E-05	589.7533583526392	58.621	0.3165	58.621	58.473	58.79	0					24	10	3	0	0	0	0.2446	1	12960	12960		11.64	3.047	1	238460			3416	3561	2364	2378	4398	4398					-0.08887751761153595
EYDEHFPEI	9	Unmodified	_EYDEHFPEI_					0	0	0		ENST00000481096.6_1_X:51808851-51809606:-|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3345947265625	2	589.753661	1177.49277	0.38176	0.00022514	0.23159	0.00013658	0.61334	0.00036172	589.7538599597615	58.551	0.44123	58.622	58.476	58.917	0.070477					25	14	2	0	0	0	0.1478	1	12787	12787		34.102	17.953	1	211060			3417	3561	2364	2378	4399	4399					-0.08887751761153595
EYDKIANI	8	Unmodified	_EYDKIANI_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2505187988281	2	483.250557	964.486562	0.088204	4.2625E-05	-0.32095	-0.0001551	-0.23274	-0.00011247	483.2503875645718	38.207	0.76168	38.294	38.073	38.835	0.08688					63	28	4	0	0	0	0.43379	1	6651	6651		21.747	3.6117	1	395610	+		3418	10442	2365	2379	4400	4400					0.002897747979545784
EYDNFFQHL	9	Unmodified	_EYDNFFQHL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.28759765625	2	606.769645	1211.52474	0.67789	0.00041133	0.54331	0.00032967	1.2212	0.00074099	606.7696183979135	68.001	0.63902	68.001	67.857	68.496	0					32	22	2	0	0	0	0.037705	1	15824	15824		46.021	27.875	1	291660			3419	800	2366	2380	4401	4401					-0.07256339287368974
EYDNFFQHL	9	Unmodified	_EYDNFFQHL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2875366210938	2	606.769645	1211.52474	0.93684	0.00056844	-0.28463	-0.0001727	0.65221	0.00039574	606.7690605310688	67.949	0.48802	68.012	67.845	68.333	0.063507					26	17	2	0	0	0	0.10067	1	15657	15657		32.305	17.467	1	360440			3420	800	2366	2380	4402	4402					-0.07256339287368974
EYDWVQFR	8	Unmodified	_EYDWVQFR_					0	0	0			REV__ENST00000393987.2_1_6:43193473-43193632:-|nuORF	REV__ENST00000393987.2_1_6:43193473-43193632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7658081054688	2	571.766906	1141.51926	-0.35091	-0.00020064	-0.32072	-0.00018338	-0.67163	-0.00038401	571.7665831223537	19.837	0.24658	19.837	19.691	19.937	0					39	27	2	0	0	0	0.54097	1	1435	1435		0.69038	0	1	16489	+		3421	8720	2367	2381	4403	4403					-0.045840180791856255
EYEEMLLDDF	10	Unmodified	_EYEEMLLDDF_					0	0	0		tr|U7T3B6|U7T3B6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00341PE=4SV=1	tr|U7T3B6|U7T3B6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00341PE=4SV=1	tr|U7T3B6|U7T3B6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00341PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.1837158203125	3	435.184805	1302.53259	-0.19508	-8.4897E-05	-2.6974	-0.0011738	-2.8924	-0.0012587	435.183991026952	43.173	0.70444	43.262	43.009	43.714	0.089764					69	25	4	0	0	0	0.46521	1	8182	8182		1.9064	0.45126	1	245020			3422	13704	2368	2382	4404	4404					-0.10657992872779687
EYEGKWLLF	9	Unmodified	_EYEGKWLLF_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8026123046875	2	592.802957	1183.59136	0.38126	0.00022601	-0.6065	-0.00035954	-0.22524	-0.00013352	592.8023743314087	76	1.8751	76	75.268	77.144	0					207	89	3	0	0	0	0.091044	2	18281	18242;18281		34.402	2.9451	1	3505900			3423	3840	2369	2383	4405;4406	4406					0.006908962745228564
EYEGKWLLF	9	Unmodified	_EYEGKWLLF_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8025512695312	2	592.802957	1183.59136	0.36903	0.00021876	-0.50652	-0.00030027	-0.13749	-8.1503E-05	592.8024008581962	75.83	1.8908	75.875	75.297	77.188	0.044037					214	88	3	0	0	0	0.0084662	1	18100	18100		71.922	28.064	1	3174100			3424	3840	2369	2383	4407	4407					0.006908962745228564
EYEWLDFST	9	Unmodified	_EYEWLDFST_					0	0	0		tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.7522583007812	2	595.256037	1188.49752	-0.24317	-0.00014475	0.92633	0.0005514	0.68316	0.00040666	595.2541470497299	44.628	0.19325	44.628	44.554	44.747	0					10	6	2	0	0	0	0.25845	1	8696	8696		2.0598	0.21551	1	28065			3425	13690	2370	2384	4408	4408					-0.08918867618444892
EYFEFSEFF	9	Unmodified	_EYFEFSEFF_					0	0	0		IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7593994140625	2	622.760955	1243.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.11	1	99.11	98.61	99.61	0								0	0	0	0.25992	1	25274	25274		7.2892	2.96	1				3426	2633	2371	2385	4409	4409					-0.10465679613048451
EYFEFSEFF	9	Unmodified	_EYFEFSEFF_					0	0	0		IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2571411132812	2	622.760955	1243.50736	0.34266	0.00021339	-1.571	-0.00097833	-1.2283	-0.00076494	622.760034626673	99.03	0.25328	99.072	98.997	99.25	0.041939					26	19	2	0	0	0	0.25875	1	25126	25126		1.8442	0.19162	1	84913			3427	2633	2371	2385	4410	4410					-0.10465679613048451
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2522583007812	2	541.2531	1080.49165	0.51268	0.00027749	-0.59594	-0.00032256	-0.083262	-4.5066E-05	541.2522970512608	63.355	0.56747	63.355	63.195	63.762	0					44	19	3	0	0	0	0.37119	1	14407	14407		29.082	9.7196	1	453910			3428	3461	2372	2386	4411	4411					-0.045379213394198814
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2525024414062	2	541.2531	1080.49165	0.5219	0.00028248	-0.25882	-0.00014009	0.26309	0.0001424	541.252416867036	63.286	0.56142	63.359	63.146	63.707	0.072697					55	22	4	0	0	0	0.039635	1	14214	14214		64.236	34.012	1	432050			3429	3461	2372	2386	4412	4412					-0.045379213394198814
EYFRFVKVKIA	11	Unmodified	_EYFRFVKVKIA_					0	0	0		PCDH20|p.V663Gfs*7|1|0.07|ENSG00000280165|chr13:61412111-61412112|-/GTACTGC|frameshift_variant;ENSG00000280165|ENST00000409204|PCDH20	PCDH20|p.V663Gfs*7|1|0.07|ENSG00000280165|chr13:61412111-61412112|-/GTACTGC|frameshift_variant	PCDH20|p.V663Gfs*7|1|0.07|ENSG00000280165|chr13:61412111-61412112|-/GTACTGC|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.1015319824219	3	467.274729	1398.80236	-0.49014	-0.00022903	-0.80917	-0.0003781	-1.2993	-0.00060713	467.27433142428106	41.158	0.4654	41.158	40.967	41.433	0					29	16	2	0	0	0	0.311	1	7645	7645		0.50596	0	1	43198			3430	5770	2373	2387	4413	4413					0.11890773316417835
EYFRFVKVKIA	11	Unmodified	_EYFRFVKVKIA_					0	0	0		PCDH20|p.V663Gfs*7|1|0.07|ENSG00000280165|chr13:61412111-61412112|-/GTACTGC|frameshift_variant;ENSG00000280165|ENST00000409204|PCDH20	PCDH20|p.V663Gfs*7|1|0.07|ENSG00000280165|chr13:61412111-61412112|-/GTACTGC|frameshift_variant	PCDH20|p.V663Gfs*7|1|0.07|ENSG00000280165|chr13:61412111-61412112|-/GTACTGC|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	467.274729	1398.80236	-0.4674	-0.0002184	0.072006	3.3647E-05	-0.39539	-0.00018476	467.27470772493785	40.929	0.49476	41.018	40.837	41.332	0.089642	-0.069957	0.00061716	NaN	0.50596	33	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64030			3431	5770	2373	2387							0.11890773316417835
EYFSILGP	8	Unmodified	_EYFSILGP_					0	0	0		ENST00000549413.1_1_12:56355068-56359795:-|nuORF	ENST00000549413.1_1_12:56355068-56359795:-|nuORF	ENST00000549413.1_1_12:56355068-56359795:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	463.2370910644531	2	463.236919	924.459284	0.29714	0.00013765	0.0098503	4.563E-06	0.30699	0.00014221	463.2368773065183	90.08	0.76762	90.08	89.86	90.628	0					60	30	2	0	0	0	0.030259	2	22514	22514;22555		93.883	23.168	1	2114300			3432	7093	2374	2388	4414;4415	4414					-0.005967087424096462
EYFSILGP	8	Unmodified	_EYFSILGP_					0	0	0		ENST00000549413.1_1_12:56355068-56359795:-|nuORF	ENST00000549413.1_1_12:56355068-56359795:-|nuORF	ENST00000549413.1_1_12:56355068-56359795:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	463.2368469238281	2	463.236919	924.459284	-0.09124	-4.2266E-05	0.48423	0.00022431	0.39299	0.00018205	463.23702121912083	90.006	0.70856	90.04	89.822	90.531	0.034065					55	28	2	0	0	0	0.030259	1	22354	22354		93.883	19.487	1	1480600			3433	7093	2374	2388	4416	4416					-0.005967087424096462
EYFSSEESFDD	11	Unmodified	_EYFSSEESFDD_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.1696472167969	3	452.1701	1353.48847	0.0062609	2.831E-06	-1.5901	-0.00071899	-1.5838	-0.00071616	452.1695756511361	49.107	0.55423	49.184	48.93	49.484	0.076607					90	20	7	0	0	0	0.41309	1	9894	9894		1.3296	0.11481	1	264000	+		3434	9946	2375	2389	4417	4417					-0.17413305765421683
EYFSYFNN	8	Unmodified	_EYFSYFNN_					0	0	0		tr|U7SU90|U7SU90_FUSNUTypeIIIpantothenatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaXPE=3SV=1	tr|U7SU90|U7SU90_FUSNUTypeIIIpantothenatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaXPE=3SV=1	tr|U7SU90|U7SU90_FUSNUTypeIIIpantothenatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaXPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.757568359375	2	542.224539	1082.43453	0.12668	6.8688E-05	1.7006	0.00092209	1.8272	0.00099078	542.2253831977115	35.286	0.32906	35.286	35.088	35.417	0					14	11	2	0	0	0	0.3576	1	5825	5825		2.0598	0.21551	1	16157			3435	13603	2376	2390	4418	4418					-0.10339388615807366
EYFTYEEL	8	Unmodified	_EYFTYEEL_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7671508789062	2	547.239855	1092.46516	0.21798	0.00011929	-3.8206	-0.0020908	-3.6026	-0.0019715	547.2378944102202	48.696	0.28754	48.696	48.483	48.77	0					12	9	2	0	0	0	0.35759	1	9922	9922		12.532	2.4576	1	44618			3436	7490	2377	2391	4419	4419					-0.07737655021446699
EYGAILSFF	9	Unmodified	_EYGAILSFF_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7628173828125	2	523.7633	1045.51205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.966	1	97.006	96.506	97.506	0.040535								0	0	0	0.18435	1	24469	24469		20.454	2.3073	1				3437	2791	2378	2392	4420	4420					-0.008887506796099842
EYGFISQTL	9	Unmodified	_EYGFISQTL_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2637939453125	2	529.263665	1056.51278	0.061099	3.2338E-05	0.88066	0.0004661	0.94176	0.00049844	529.264012095348	72.027	0.634	72.027	71.834	72.468	0					45	21	3	0	0	0	0.012041	2	17015	17015;17069		63.961	38.561	1	555740			3438	621	2379	2393	4421;4422	4421					-0.013219560305742561
EYGFISQTL	9	Unmodified	_EYGFISQTL_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2642822265625	2	529.263665	1056.51278	0.1743	9.2252E-05	0.80304	0.00042502	0.97734	0.00051727	529.2638155080704	71.976	0.55872	72.032	71.842	72.401	0.055931					42	19	3	0	0	0	0.023873	3	16838	16838;16893;16926		55.503	37.356	1	307570			3439	621	2379	2393	4423;4424;4425	4423					-0.013219560305742561
EYGFYHDFF	9	Unmodified	_EYGFYHDFF_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.7533569335938	2	612.753464	1223.49238	-0.19685	-0.00012062	0.65391	0.00040069	0.45707	0.00028007	612.7537646669393	73.025	0.54314	73.025	72.799	73.342	0					54	18	4	0	0	0	0.064059	1	17321	17321		64.236	50.33	1	800100			3440	3150	2380	2394	4426	4426					-0.1104312669040155
EYGFYHDFF	9	Unmodified	_EYGFYHDFF_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.7535400390625	2	612.753464	1223.49238	-0.011906	-7.2952E-06	0.3964	0.0002429	0.3845	0.0002356	612.7536319485426	72.97	0.62537	73.023	72.772	73.398	0.052567					60	22	4	0	0	0	0.01961	1	17152	17152		81.613	33.864	1	870630			3441	3150	2380	2394	4427	4427					-0.1104312669040155
EYGKFFVTL	9	Unmodified	_EYGKFFVTL_					0	0	0		ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.29248046875	2	552.292225	1102.5699	0.62951	0.00034767	0.036997	2.0433E-05	0.66651	0.00036811	552.292099567363	69.585	0.84943	69.585	69.347	70.196	0					91	29	4	0	0	0	0.0022565	4	16295	16244;16295;16340;16392		114.2	0	1	2510000			3442	47	2381	2395	4428;4429;4430;4431	4429					0.02271511245817237
EYGKFFVTL	9	Unmodified	_EYGKFFVTL_					0	0	0		ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2925415039062	2	552.292225	1102.5699	0.46581	0.00025726	0.2428	0.00013409	0.7086	0.00039136	552.2922294384778	69.499	0.86565	69.561	69.308	70.174	0.062119					98	33	4	0	0	0	0.0042703	4	16124	16075;16124;16177;16226		99.755	0	1	1982500			3443	47	2381	2395	4432;4433;4434;4435	4433					0.02271511245817237
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7637329101562	2	559.281857	1116.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.08	1	54.08	53.58	54.58	0								0	0	0	0.23204	1	11555	11555		13.042	6.3193	1				3444	880	2382	2396	4436	4436					-0.004450791338513227
EYGPECQYII	10	Unmodified	_EYGPECQYII_					0	0	0			REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1	REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.7735595703125	2	607.773539	1213.53253	0.38534	0.0002342	0.6286	0.00038205	1.0139	0.00061625	607.7732726198016	52.358	0.92996	52.358	52.015	52.945	0					69	32	4	0	0	0	0.30966	2	11035	11035;11042		21.537	2.28	1	140060	+		3445	10023	2383	2397	4437;4438	4437					-0.06569948082119481
EYGPIHILW	9	Unmodified	_EYGPIHILW_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2981567382812	2	564.297842	1126.58113	0.42576	0.00024026	0.017707	9.9919E-06	0.44347	0.00025025	564.2977279593814	75.139	0.69267	75.139	74.935	75.627	0					84	26	4	0	0	0	0.0042952	3	17993	17948;17993;18040		98.807	53.771	1	2211800			3446	3842	2384	2398	4439;4440;4441	4440					0.022903333399654002
EYGPIHILW	9	Unmodified	_EYGPIHILW_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2979125976562	2	564.297842	1126.58113	0.3789	0.00021381	-0.020315	-1.1464E-05	0.35859	0.00020235	564.2977210078903	75.084	0.69806	75.128	74.921	75.619	0.044037					66	25	3	0	0	0	0.0025247	3	17831	17779;17831;17880		112.56	65.638	1	2707200			3447	3842	2384	2398	4442;4443;4444	4443					0.022903333399654002
EYGQVNHAL	9	Unmodified	_EYGQVNHAL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.751953125	2	515.751256	1029.48796	0.16241	8.3763E-05	0.87471	0.00045113	1.0371	0.0005349	515.7517160780789	35.077	0.3724	35.155	34.988	35.36	0.078827					27	15	2	0	0	0	0.25979	1	5685	5685		11.64	8.0438	1	70390			3448	2477	2385	2399	4445	4445					-0.025605911132970505
EYGSIIAFF	9	Unmodified	_EYGSIIAFF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7635498046875	2	523.7633	1045.51205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.471	1	95.471	94.971	95.971	0								0	0	0	0.018691	1	24169	24169		63.563	11.229	1				3449	2352	2386	2400	4446	4446					-0.008887506796099842
EYGSIIAFF	9	Unmodified	_EYGSIIAFF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.76318359375	2	523.7633	1045.51205	0.24722	0.00012948	0.32694	0.00017124	0.57415	0.00030072	523.7633747460571	95.36	0.32147	95.36	95.118	95.439	0					41	13	4	0	0	0	0.011069	1	24112	24112		74.396	36.245	1	446350			3450	2352	2386	2400	4447	4447					-0.008887506796099842
EYGSIIAFF	9	Unmodified	_EYGSIIAFF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7633666992188	2	523.7633	1045.51205	0.10787	5.65E-05	0.13128	6.876E-05	0.23915	0.00012526	523.7633025130915	95.283	0.56342	95.322	95.017	95.58	0.038872					54	23	4	0	0	0	0.0076656	1	23976	23976		74.396	27.475	1	407880			3451	2352	2386	2400	4448	4448					-0.008887506796099842
EYHTRWYFKYF	11	Unmodified	_EYHTRWYFKYF_					0	0	0		nc|ENSG00000136895|Q5VVW2-3|GARNL3;nc|ENSG00000136895|Q5VVW2-2|GARNL3;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3	nc|ENSG00000136895|Q5VVW2-3|GARNL3	nc|ENSG00000136895|Q5VVW2-3|GARNL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7278442382812	3	547.261259	1638.76195	0.044918	2.4582E-05	1.4806	0.00081029	1.5255	0.00083487	547.2622417333062	39.54	0.40418	39.54	39.318	39.722	0					18	14	2	0	0	0	0.311	1	7191	7191		0.50596	0.051438	1	49348			3452	2818	2387	2401	4449	4449					-0.03188193074038281
EYHVLMLD	8	Unmodified	_EYHVLMLD_					0	0	0			REV__ENST00000479939.1_1_7:30062251-30066124:-|nuORF	REV__ENST00000479939.1_1_7:30062251-30066124:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7850646972656	2	510.24696	1018.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.01	1	101.01	100.51	101.51	0								0	0	0	0.38822	1	25852	25852		2.3027	0	1		+		3453	8569	2388	2402	4450	4450					-0.02913281074131646
EYIHALTLL	9	Unmodified	_EYIHALTLL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.8056030273438	2	536.8055	1071.59645	0.59151	0.00031753	0.076015	4.0805E-05	0.66753	0.00035833	536.805427415202	70.191	0.7745	70.191	69.933	70.708	0					54	28	3	0	0	0	0.033885	2	16441	16441;16488		48.346	10.372	1	569450			3454	2538	2389	2403	4451;4452	4451					0.06351200137146407
EYIHALTLL	9	Unmodified	_EYIHALTLL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.8056640625	2	536.8055	1071.59645	0.66878	0.000359	0.32666	0.00017535	0.99544	0.00053436	536.8054162367248	70.051	0.61888	70.112	69.94	70.559	0.060562					52	25	3	0	0	0	0.033885	1	16283	16283		48.346	10.372	1	413350			3455	2538	2389	2403	4453	4453					0.06351200137146407
EYIIEYPHF	9	Unmodified	_EYIIEYPHF_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7930297851562	2	605.792589	1209.57063	0.81841	0.00049578	-0.074871	-4.5356E-05	0.74353	0.00045043	605.7921407371733	70.231	1.2152	70.231	69.672	70.888	0					110	44	3	0	0	0	0.21398	1	16565	16565		16.942	3.3274	1	622290			3456	1783	2390	2404	4454	4454					-0.02577694105161754
EYIIEYPHF	9	Unmodified	_EYIIEYPHF_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7932739257812	2	605.792589	1209.57063	0.83131	0.0005036	-0.35535	-0.00021527	0.47596	0.00028833	605.7919793649289	70.141	1.0055	70.202	69.751	70.756	0.060562					104	41	3	0	0	0	0.0046476	1	16285	16285		85.357	55.516	1	621710			3457	1783	2390	2404	4455	4455					-0.02577694105161754
EYIKFLDLF	9	Unmodified	_EYIKFLDLF_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.8132934570312	2	594.320983	1186.62741	0.41079	0.00024414	0.19234	0.00011431	0.60313	0.00035845	594.3210403313653	88.3	0.50859	88.3	88.139	88.648	0					50	19	4	0	0	0	0.02293	2	22068	22012;22068		56.177	34.576	1	1364400			3458	5308	2391	2405	4456;4457	4457					0.041563534513670675
EYIKFLDLF	9	Unmodified	_EYIKFLDLF_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.32421875	2	594.320983	1186.62741	0.26952	0.00016018	0.29463	0.0001751	0.56415	0.00033529	594.3210659835332	88.294	0.41605	88.324	88.141	88.557	0.030037					53	15	4	0	0	0	0.0042703	1	21843	21843		99.755	69.119	1	1227100			3459	5308	2391	2405	4458	4458					0.041563534513670675
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.8405151367188	2	584.839874	1167.66519	0.47012	0.00027495	0.66539	0.00038915	1.1355	0.00066409	584.8403080536941	56.971	0.63056	56.971	56.777	57.408	0					55	22	3	0	0	0	0.0042454	1	12446	12446		100.71	49.079	1	756620			3460	5238	2392	2406	4459	4459					0.08806864436837714
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8402709960938	2	584.839874	1167.66519	0.70949	0.00041494	0.28101	0.00016435	0.9905	0.00057929	584.8401796455017	56.898	0.67571	56.965	56.735	57.411	0.066448					55	25	3	0	0	0	0.0016022	1	12285	12285		118.21	68.655	1	605680			3461	5238	2392	2406	4460	4460					0.08806864436837714
EYILALNEL	9	Unmodified	_EYILALNEL_					0	0	0		nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.294921875	2	539.294965	1076.57538	0.64393	0.00034727	0.046763	2.5219E-05	0.69069	0.00037248	539.2948012597731	85.247	0.42074	85.247	85.014	85.435	0					29	14	3	0	0	0	0.034936	1	21063	21063		47.594	9.4188	1	251960			3462	3531	2393	2407	4461	4461					0.040151900376031335
EYILALNEL	9	Unmodified	_EYILALNEL_					0	0	0		nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2954711914062	2	539.294965	1076.57538	0.83879	0.00045236	0.14408	7.7701E-05	0.98287	0.00053006	539.2946570947931	85.228	0.45479	85.251	85.035	85.49	0.023132					38	18	3	0	0	0	0.088609	1	20884	20884		34.932	8.6639	1	230170			3463	3531	2393	2407	4462	4462					0.040151900376031335
EYINFLENL	9	Unmodified	_EYINFLENL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7918701171875	2	577.790047	1153.56554	0.38548	0.00022272	0.24731	0.00014289	0.63279	0.00036562	577.7901491452432	90.957	0.84962	90.957	90.734	91.584	0					57	30	3	0	0	0	3.4063E-24	3	22780	22780;22806;22851		226.55	123.2	1	1797000			3464	4835	2394	2408	4463;4464;4465	4463					-0.0050999796776523
EYINFLENL	9	Unmodified	_EYINFLENL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7903442382812	2	577.790047	1153.56554	0.18405	0.00010634	0.34966	0.00020203	0.53371	0.00030837	577.7902568017607	90.951	0.84932	90.987	90.763	91.612	0.035446					77	30	3	0	0	0	4.1082E-32	2	22635	22635;22680		241.96	138.54	1	1892800			3465	4835	2394	2408	4466;4467	4466					-0.0050999796776523
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3062744140625	2	620.305864	1238.59717	0.042105	2.6118E-05	0.31477	0.00019526	0.35688	0.00022137	620.3062740982833	63.014	0.42281	63.014	62.809	63.232	0					30	17	2	0	0	0	0.0569	1	14267	14267		41.84	16.44	1	346260			3466	1843	2395	2409	4468	4468					-0.012580052138218889
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3076171875	2	620.305864	1238.59717	0.082822	5.1375E-05	0.60205	0.00037346	0.68488	0.00042483	620.3064743861968	62.877	0.24878	62.949	62.805	63.054	0.072701					18	9	2	0	0	0	0.0569	1	14092	14092		41.84	16.44	1	198820			3467	1843	2395	2409	4469	4469					-0.012580052138218889
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.305908203125	2	620.305864	1238.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.012	1	63.084	62.584	63.584	0.072701								0	0	0	0.16903	1	14135	14135		22.736	8.8302	1				3468	1843	2395	2409	4470	4470					-0.012580052138218889
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.31640625	2	561.3157	1120.61685	0.50575	0.00028389	0.029507	1.6563E-05	0.53526	0.00030045	561.3160333065141	96.898	0.83404	96.898	96.604	97.438	0					187	39	6	0	0	0	5.0762E-05	6	24596	24550;24596;24636;24677;24720;24766		139.14	90.793	1	29915000			3469	4775	2396	2410	4471;4472;4473;4474;4475;4476	4472					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3157348632812	2	561.3157	1120.61685	0.62036	0.00034822	-0.14052	-7.8877E-05	0.47984	0.00026934	561.3154088059885	97.484	1.1591	97.484	97.461	98.62	0					160	59	3	0	0	0	0.065576	5	24812	24812;24854;24902;24946;24991		39.95	19.496	1	532630			3470	4775	2396	2410	4477;4478;4479;4480;4481	4477					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3162841796875	2	561.3157	1120.61685	0.582	0.00032669	-0.014144	-7.939E-06	0.56786	0.00031875	561.3160366589278	96.901	1.8179	96.941	96.611	98.429	0.039772					254	91	5	0	0	0	5.0762E-05	8	24426	24382;24426;24465;24504;24550;24593;24637;24678		139.14	90.793	1	23783000			3471	4775	2396	2410	4482;4483;4484;4485;4486;4487;4488;4489	4483					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3158569335938	2	561.3157	1120.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.807	1	97.848	97.348	98.348	0.040855								0	0	0	0.084126	1	24725	24725		38.176	11.292	1				3472	4775	2396	2410	4490	4490					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3156127929688	2	561.3157	1120.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.092	1	98.134	97.634	98.634	0.041931								0	0	0	0.13619	1	24813	24813		27.629	2.2295	1				3473	4775	2396	2410	4491	4491					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3158569335938	2	561.3157	1120.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.244	1	98.286	97.786	98.786	0.041931								0	0	0	0.16903	1	24859	24859		22.736	2.2827	1				3474	4775	2396	2410	4492	4492					0.06136370796957635
EYIRPFAI	8	Unmodified	_EYIRPFAI_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.77972412109375	2	504.779285	1007.54402	-0.075642	-3.8182E-05	0.47595	0.00024025	0.40031	0.00020207	504.779526444506	72.805	0.9043	72.805	72.409	73.313	0					63	31	3	0	0	0	0.4433	1	17269	17269		20.454	8.8133	1	236590	+		3475	13104	2397	2411	4493	4493					0.04054661794191361
EYIRPFAI	8	Unmodified	_EYIRPFAI_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7798767089844	2	504.779285	1007.54402	0.075958	3.8342E-05	0.45712	0.00023075	0.53308	0.00026909	504.7794978676815	72.853	0.84911	72.905	72.489	73.338	0.052574					64	29	3	0	0	0	0.4433	1	17094	17094		20.454	8.8133	1	229690	+		3476	13104	2397	2411	4494	4494					0.04054661794191361
EYIRPFAI	8	Unmodified	_EYIRPFAI_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.779285	1007.54402	-0.075642	-3.8182E-05	0.47595	0.00024025	0.40031	0.00020207	504.779526444506	72.805	0.9043	72.805	72.409	73.313	0	-0.050036	1.1375E-05	NaN	20.454	63	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236590	+		3477	13104	2397	2411							0.04054661794191361
EYIRPFAI	8	Unmodified	_EYIRPFAI_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	504.779285	1007.54402	0.075958	3.8342E-05	0.45712	0.00023075	0.53308	0.00026909	504.7794978676815	72.853	0.84911	72.905	72.489	73.338	0.052574	0.050036	-7.6352E-06	NaN	20.454	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229690	+		3478	13104	2397	2411							0.04054661794191361
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.3014526367188	2	585.301113	1168.58767	0.41761	0.00024443	-0.40148	-0.00023499	0.016128	9.4399E-06	585.3009019055269	52.92	1.1116	52.92	52.729	53.841	0					99	43	4	0	0	0	0.24767	1	11329	11329		13.042	5.4335	1	980100			3479	3059	2398	2412	4495	4495					0.010122265006657472
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.303955078125	2	585.301113	1168.58767	0.71411	0.00041797	-0.686	-0.00040152	0.028105	1.645E-05	585.3007387062491	52.885	0.67854	52.951	52.77	53.448	0.06543					80	31	3	0	0	0	0.010235	1	11055	11055		66.457	40.189	1	820980			3480	3059	2398	2412	4496	4496					0.010122265006657472
EYISIALRI	9	Unmodified	_EYISIALRI_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3190307617188	2	539.318774	1076.623	0.5095	0.00027478	-0.0075321	-4.0622E-06	0.50196	0.00027072	539.3186834654701	70.776	1.0791	70.776	70.647	71.726	0					85	37	3	0	0	0	0.00061878	6	16681	16636;16681;16730;16787;16838;16899		129.77	64.537	1	1368800			3481	476	2399	2413	4497;4498;4499;4500;4501;4502	4498					0.08774889028450161
EYISIALRI	9	Unmodified	_EYISIALRI_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3190307617188	2	539.318774	1076.623	0.76458	0.00041235	-0.2648	-0.00014281	0.49979	0.00026954	539.3186233009529	70.677	0.97428	70.738	70.596	71.571	0.060562					68	36	3	0	0	0	0.0042703	2	16497	16444;16497		99.755	43.578	1	915730			3482	476	2399	2413	4503;4504	4504					0.08774889028450161
EYISIALRI	9	Unmodified	_EYISIALRI_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3192749023438	2	539.318774	1076.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.999	1	71.057	70.557	71.557	0.058578								0	0	0	3.2231E-05	1	16556	16556		99.755	43.578	1				3483	476	2399	2413	4505	4505					0.08774889028450161
EYISIALRI	9	Unmodified	_EYISIALRI_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3187255859375	2	539.318774	1076.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.159	1	71.218	70.718	71.718	0.058578								0	0	0	0.08948	1	16605	16605		36.506	17.249	1				3484	476	2399	2413	4506	4506					0.08774889028450161
EYISIALRI	9	Unmodified	_EYISIALRI_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3187255859375	2	539.318774	1076.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.513	1	71.572	71.072	72.072	0.058578								0	0	0	0.18462	1	16713	16713		20.415	8.7742	1				3485	476	2399	2413	4507	4507					0.08774889028450161
EYKDYIVF	8	Unmodified	_EYKDYIVF_					0	0	0		tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1	tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1	tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.760498046875	2	538.768583	1075.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.142	1	61.215	60.715	61.715	0.073421								0	0	0	0.38822	1	13567	13567		7.9102	0	1				3486	13445	2400	2414	4508	4508					-0.012127680251978745
EYKIAFPYL	9	Unmodified	_EYKIAFPYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3082275390625	2	572.307875	1142.6012	0.4123	0.00023596	0.38	0.00021748	0.7923	0.00045344	572.3079928309634	75.236	0.72437	75.236	74.988	75.713	0					101	28	6	0	0	0	0.00081324	3	18013	18013;18061;18114		126.57	97.484	1	5921900			3487	4573	2401	2415	4509;4510;4511	4509					0.0356008427991128
EYKIAFPYL	9	Unmodified	_EYKIAFPYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3082885742188	2	572.307875	1142.6012	0.35726	0.00020446	0.33223	0.00019014	0.68949	0.0003946	572.3080177279306	75.178	0.82286	75.222	74.967	75.79	0.044037					97	32	5	0	0	0	0.00081324	3	17850	17850;17894;17934		126.57	97.484	1	5960700			3488	4573	2401	2415	4512;4513;4514	4512					0.0356008427991128
EYKMTFFGDG	10	Unmodified	_EYKMTFFGDG_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3397827148438	2	597.760432	1193.50631	0.2335	0.00013958	-3.0414	-0.001818	-2.8079	-0.0016784	597.7589477956377	76.353	0.29514	76.392	76.313	76.608	0.03923					15	10	2	0	0	0	0.30896	1	18255	18255		18.146	1.0335	1	224070	+		3489	8290	2402	2416	4515	4515					-0.08270217253584633
EYKPNGDYF	9	Unmodified	_EYKPNGDYF_					0	0	0			REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF	REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2789306640625	2	566.750921	1131.48729	0.41174	0.00023335	-0.14178	-8.0356E-05	0.26996	0.000153	566.7505379989356	68.973	0.8384	68.973	68.377	69.215	0					49	30	2	0	0	0	0.1789	1	16102	16102		29.082	5.9332	1	120160	+		3490	8173	2403	2417	4516	4516					-0.07319430553002348
EYLAGFYYTD	10	Unmodified	_EYLAGFYYTD_					0	0	0			REV__nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	REV__nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.763671875	2	621.271687	1240.52882	0.13956	8.6705E-05	2.1561	0.0013395	2.2957	0.0014262	621.2734205993974	63.08	0.13603	63.152	63.054	63.19	0.072701					6	5	2	0	0	0	0.31794	1	14164	14164		3.5965	0	1	65893	+		3491	12815	2404	2418	4517	4517					-0.08182294584344163
EYLAGFYYTD	10	Unmodified	_EYLAGFYYTD_					0	0	0			REV__nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	REV__nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	621.271687	1240.52882	0.089738	5.5752E-05	0.90063	0.00055954	0.99037	0.00061529	621.7732767149265	63.068	0.17009	63.068	63.025	63.195	0	-0.042413	-0.0012246	NaN	3.5965	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261730	+		3492	12815	2404	2418							-0.08182294584344163
EYLDAIKKF	9	Unmodified	_EYLDAIKKF_					0	0	0		chr18:63640991-63641091|133|33.91|0.17|7.64|-|0|TE_info:L3,L3_dup42828,CR1,LINE,donor,+,63641091,63641122|SERPINB4,None|1;nc|ENSG00000057149|P29508-2|SERPINB3;ENSG00000206073|ENST00000341074|SERPINB4;ENSG00000057149|ENST00000283752|SERPINB3	chr18:63640991-63641091|133|33.91|0.17|7.64|-|0|TE_info:L3,L3_dup42828,CR1,LINE,donor,+,63641091,63641122|SERPINB4,None|1	chr18:63640991-63641091|133|33.91|0.17|7.64|-|0|TE_info:L3,L3_dup42828,CR1,LINE,donor,+,63641091,63641122|SERPINB4,None|1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.811279296875	2	563.810782	1125.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.329	1	52.396	51.896	52.896	0.067173								0	0	0	0.23593	1	10886	10886		12.241	3.4953	1				3493	156	2405	2419	4518	4518					0.04923182791549152
EYLDKWFVL	9	Unmodified	_EYLDKWFVL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8187255859375	2	606.818607	1211.62266	0.70918	0.00043035	0.095418	5.7901E-05	0.8046	0.00048825	606.8184734231091	82.777	0.48317	82.799	82.617	83.1	0.021744					25	16	2	0	0	0	0.12214	1	20137	20137		27.629	3.6082	1	112610			3494	2762	2406	2420	4519	4519					0.025314693086102125
EYLDKWFVL	9	Unmodified	_EYLDKWFVL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	606.818607	1211.62266	0.75336	0.00045715	-0.86777	-0.00052658	-0.11441	-6.9425E-05	606.8179676635542	82.727	0.36441	82.727	82.563	82.928	0	-0.035984	-0.00052541	NaN	27.629	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101410			3495	2762	2406	2420							0.025314693086102125
EYLDLFGNTF	10	Unmodified	_EYLDLFGNTF_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.7874145507812	2	609.787504	1217.56045	0.46674	0.00028461	1.0289	0.00062738	1.4956	0.000912	609.7874202742875	94.089	0.6981	94.089	93.914	94.612	0					86	36	3	0	0	0	2.7127E-07	3	23744	23728;23744;23792		147.24	83.004	1	764860			3496	4087	2407	2421	4520;4521;4522	4521					-0.03962301830392789
EYLDLFGNTF	10	Unmodified	_EYLDLFGNTF_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.2896728515625	2	609.787504	1217.56045	0.49151	0.00029972	0.92942	0.00056675	1.4209	0.00086647	609.7874073754361	94.061	0.62486	94.099	93.963	94.588	0.038086					77	29	3	0	0	0	4.1612E-05	2	23568	23568;23610		117.76	52.326	1	514820			3497	4087	2407	2421	4523;4524	4523					-0.03962301830392789
EYLDSGWNLN	10	Unmodified	_EYLDSGWNLN_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7921142578125	2	605.772385	1209.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.086	1	70.086	69.586	70.586	0								0	0	0	0.32245	1	16432	16432		14.838	2.5976	1				3498	1989	2408	2422	4525	4525					-0.06616660495569704
EYLENALKL	9	Unmodified	_EYLENALKL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2832641601562	2	546.800414	1091.58628	0.41783	0.00022847	0.066	3.6089E-05	0.48383	0.00026456	546.8005262477387	62.462	1.1717	62.462	62.041	63.212	0					108	44	4	0	0	0	0.13341	1	14206	14206		26.268	0.86883	1	2354000			3499	3845;5545	2409	2423	4526	4526					0.04414592411899321
EYLENALKL	9	Unmodified	_EYLENALKL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2836303710938	2	546.800414	1091.58628	0.38335	0.00020961	-0.066112	-3.615E-05	0.31723	0.00017346	546.8004971864367	62.362	0.99035	62.435	62.086	63.076	0.072701					96	35	4	0	0	0	0.056368	2	14007	14007;14057		41.956	5.4494	1	1950200			3500	3845;5545	2409	2423	4527;4528	4527					0.04414592411899321
EYLERAPEL	9	Unmodified	_EYLERAPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2884521484375	2	560.287671	1118.56079	0.25466	0.00014268	1.4446	0.00080939	1.6992	0.00095207	560.288449301324	50.396	0.56113	50.396	50.234	50.795	0					52	19	4	0	0	0	0.005983	2	10469	10469;10528		79.596	39.647	1	569520			3501	1829	2410	2424	4529;4530	4529					0.0062511788946721936
EYLERAPEL	9	Unmodified	_EYLERAPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2891235351562	2	560.287671	1118.56079	0.41567	0.00023289	1.1576	0.00064857	1.5732	0.00088147	560.2882561842611	50.328	0.46024	50.401	50.237	50.697	0.07312					45	15	4	0	0	0	0.0022565	4	10274	10274;10283;10331;10354		114.2	66.453	1	578660			3502	1829	2410	2424	4531;4532;4533;4534	4531					0.0062511788946721936
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENST00000489749.1_1_2:7018228-7023923:+|nuORF;ENSG00000134321|ENST00000382040|RSAD2	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8268432617188	2	562.826766	1123.63898	0.40169	0.00022608	-0.35399	-0.00019924	0.047695	2.6844E-05	562.8267059055519	53.638	0.64714	53.638	53.451	54.098	0					53	23	4	0	0	0	0.0050339	2	11407	11407;11458		82.529	53.448	1	336280			3503	2659	2411	2425	4535;4536	4535					0.08210595265359188
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENST00000489749.1_1_2:7018228-7023923:+|nuORF;ENSG00000134321|ENST00000382040|RSAD2	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3280639648438	2	562.826766	1123.63898	0.48919	0.00027533	-0.08854	-4.9833E-05	0.40065	0.00022549	562.8266112255042	53.607	0.48793	53.673	53.519	54.007	0.06543					43	20	3	0	0	0	0.017478	2	11262	11262;11313		60.074	41.928	1	280510			3504	2659	2411	2425	4537;4538	4537					0.08210595265359188
EYLIVFPKL	9	Unmodified	_EYLIVFPKL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3342895507812	2	561.333893	1120.65323	0.56418	0.00031669	-0.049254	-2.7648E-05	0.51492	0.00028904	561.3340162086208	79.464	0.89455	79.464	79.157	80.051	0					130	30	5	0	0	0	6.2762E-06	5	19300	19250;19300;19344;19387;19438		152.41	152.41	1	15124000			3505	5343	2412	2426	4539;4540;4541;4542;4543	4540					0.09773247693647136
EYLIVFPKL	9	Unmodified	_EYLIVFPKL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3341674804688	2	561.333893	1120.65323	0.35307	0.00019819	0.10585	5.9417E-05	0.45892	0.00025761	561.3340497499138	79.481	0.9525	79.508	79.126	80.078	0.026436					134	33	5	0	0	0	5.0762E-05	5	19128	19082;19128;19169;19215;19268		139.14	139.14	1	13161000			3506	5343	2412	2426	4544;4545;4546;4547;4548	4545					0.09773247693647136
EYLKDNLA	8	Unmodified	_EYLKDNLA_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.25	2	483.250557	964.486562	0.067783	3.2756E-05	-0.53795	-0.00025996	-0.47017	-0.00022721	483.25023238867965	38.308	0.86839	38.308	38.05	38.918	0					68	31	4	0	0	0	0.53817	1	6858	6858		2.5775	0	1	474710	+		3507	8467	2413	2427	4549	4549					0.002897747979432097
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7725219726562	2	575.318774	1148.623	-0.1175	-6.7598E-05	0.54019	0.00031078	0.4227	0.00024319	575.3192320115088	58.745	0.38465	58.745	58.595	58.979	0					29	13	3	0	0	0	0.0045019	1	12962	12962		92.653	73.396	1	151370			3508	5429	2414	2428	4550	4550					0.054628890284675435
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.773193359375	2	575.318774	1148.623	0.19626	0.00011291	0.3116	0.00017927	0.50786	0.00029218	575.3190950512329	58.685	0.32989	58.756	58.561	58.891	0.070477					25	10	3	0	0	0	0.00022794	1	12809	12809		117.76	93.74	1	199910			3509	5429	2414	2428	4551	4551					0.054628890284675435
EYLKNIIYRF	10	Unmodified	_EYLKNIIYRF_					0	0	0		ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.5870056152344	3	453.587084	1357.73942	0.50043	0.00022699	-0.40432	-0.00018339	0.096111	4.3595E-05	453.5869242832335	61.068	0.53289	61.068	60.885	61.418	0					46	18	3	0	0	0	0.37121	3	13672	13672;13721;13731		14.957	9.5545	1	278700			3510	4779	2415	2429	4552;4553;4554	4552					0.07486207528359046
EYLKNIIYRF	10	Unmodified	_EYLKNIIYRF_					0	0	0		ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.92156982421875	3	453.587084	1357.73942	0.15091	6.8452E-05	-0.19976	-9.0608E-05	-0.048847	-2.2156E-05	453.5868424417549	60.953	0.59048	61.026	60.823	61.414	0.073421					35	19	3	0	0	0	0.41463	2	13512	13512;13594		10.315	5.9091	1	253440			3511	4779	2415	2429	4555;4556	4555					0.07486207528359046
EYLKNVLLQF	10	Unmodified	_EYLKNVLLQF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6	ENSG00000183054|ENST00000329516|RGPD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8585205078125	2	633.858264	1265.70197	0.29187	0.000185	-0.11031	-6.9922E-05	0.18155	0.00011508	633.8582112965782	75.46	0.31027	75.46	75.251	75.561	0					24	11	3	0	0	0	0.035596	1	18053	18053		61.602	31.761	1	226680			3512	460	2416	2430	4557	4557					0.07975116262764459
EYLKNVLLQF	10	Unmodified	_EYLKNVLLQF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6	ENSG00000183054|ENST00000329516|RGPD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.858642578125	2	633.858264	1265.70197	0.34905	0.00022125	-0.095785	-6.0714E-05	0.25327	0.00016054	633.8580617665024	75.355	0.30306	75.399	75.266	75.569	0.044037					19	10	2	0	0	0	0.06541	1	17898	17898		53.404	17.277	1	240020			3513	460	2416	2430	4558	4558					0.07975116262764459
EYLKVDAQF	9	Unmodified	_EYLKVDAQF_					0	0	0		YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1	YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant	YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.784912109375	2	556.784764	1111.55498	0.42943	0.0002391	3.4763	0.0019355	3.9057	0.0021746	556.786583794015	56.232	0.50453	56.232	56.035	56.539	0					34	18	2	0	0	0	0.0045417	2	12212	12212;12262		89.401	57.095	1	399460			3514	2681	2417	2431	4559;4560	4559					0.0036601937779323634
EYLKVDAQF	9	Unmodified	_EYLKVDAQF_					0	0	0		YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1	YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant	YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7844848632812	2	556.784764	1111.55498	0.43875	0.00024429	0.43418	0.00024175	0.87293	0.00048603	556.7846461406823	56.188	0.29473	56.254	56.067	56.362	0.066452					24	11	3	0	0	0	0.00021732	1	12071	12071		136.39	90.693	1	313070			3515	2681	2417	2431	4561	4561					0.0036601937779323634
EYLKVGAKLLF	11	Unmodified	_EYLKVGAKLLF_					0	0	0		ENST00000432918.5_1_6:43589353-43589629:-|nuORF;nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	ENST00000432918.5_1_6:43589353-43589629:-|nuORF	ENST00000432918.5_1_6:43589353-43589629:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.30267333984375	3	427.591946	1279.75401	0.55434	0.00023703	-0.85889	-0.00036725	-0.30455	-0.00013022	427.59162291988076	62.44	0.57068	62.44	62.341	62.912	0					42	20	3	0	0	0	0.31089	1	14186	14186		2.6312	1.4164	1	225190			3516	4495	2418	2432	4562	4562					0.12532279676520375
EYLKVGAKLLF	11	Unmodified	_EYLKVGAKLLF_					0	0	0		ENST00000432918.5_1_6:43589353-43589629:-|nuORF;nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	ENST00000432918.5_1_6:43589353-43589629:-|nuORF	ENST00000432918.5_1_6:43589353-43589629:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.302734375	3	427.591946	1279.75401	0.19814	8.4721E-05	-0.21894	-9.3617E-05	-0.020805	-8.896E-06	427.591842234636	62.362	0.57307	62.435	62.284	62.857	0.072701					31	19	2	0	0	0	0.31076	1	13998	13998		4.4062	3.0765	1	198060			3517	4495	2418	2432	4563	4563					0.12532279676520375
EYLLKAYVL	9	Unmodified	_EYLLKAYVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.32373046875	2	556.323525	1110.6325	0.58561	0.00032579	-0.23375	-0.00013004	0.35186	0.00019575	556.3233563768064	68.47	0.89331	68.47	68.211	69.104	0					84	32	4	0	0	0	0.0027323	2	15913	15913;15964		111.29	49.93	1	589570			3518	1954	2419	2433	4564;4565	4564					0.0816065731398794
EYLLKAYVL	9	Unmodified	_EYLLKAYVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3235473632812	2	556.323525	1110.6325	0.64276	0.00035758	-0.083781	-4.6609E-05	0.55898	0.00031097	556.3234008115267	68.384	0.70592	68.447	68.221	68.927	0.063507					60	26	3	0	0	0	0.0042692	4	15742	15742;15786;15833;15850		99.799	34.564	1	613790			3519	1954	2419	2433	4566;4567;4568;4569	4566					0.0816065731398794
EYLLKVNEI	9	Unmodified	_EYLLKVNEI_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ASAP2-CPSF3|2|fusion	ASAP2-CPSF3|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8164672851562	2	560.816064	1119.61758	0.52729	0.00029571	0.50757	0.00028465	1.0349	0.00058037	560.815913936474	60.343	1.0407	60.343	60.069	61.11	0					102	37	4	0	0	0	8.8922E-09	2	13475	13475;13525		160.69	0	1	701850			3520	57;56	2420	2434	4570;4571	4570					0.06255165445986677
EYLLKVNEI	9	Unmodified	_EYLLKVNEI_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ASAP2-CPSF3|2|fusion	ASAP2-CPSF3|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8163452148438	2	560.816064	1119.61758	0.31532	0.00017684	0.70931	0.00039779	1.0246	0.00057463	560.8159387353353	60.213	0.9603	60.286	60.066	61.027	0.073418					73	33	4	0	0	0	0.0034419	2	13300	13300;13348		106.94	0	1	631520			3521	57;56	2420	2434	4572;4573	4572					0.06255165445986677
EYLNFADYF	9	Unmodified	_EYLNFADYF_					0	0	0		ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.2611694335938	2	591.261122	1180.50769	0.48511	0.00028683	-0.0014056	-8.3108E-07	0.4837	0.000286	591.260921127678	91.46	0.54665	91.46	91.269	91.815	0					37	20	2	0	0	0	0.0084898	1	22942	22942		86.332	63.674	1	260060			3522	3391	2421	2435	4574	4574					-0.0753425989319112
EYLNFADYF	9	Unmodified	_EYLNFADYF_					0	0	0		ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.26123046875	2	591.261122	1180.50769	0.33776	0.0001997	0.34655	0.0002049	0.68431	0.0004046	591.2608604133761	91.449	0.57415	91.484	91.225	91.799	0.035446					53	20	3	0	0	0	0.0084898	1	22780	22780		86.332	55.695	1	225600			3523	3391	2421	2435	4575	4575					-0.0753425989319112
EYLNPVEEN	9	Unmodified	_EYLNPVEEN_					0	0	0		nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8082885742188	2	553.753661	1105.49277	0.0078357	4.3391E-06	3.3417	0.0018505	3.3495	0.0018548	554.2569268874048	30.371	0.38875	30.371	30.221	30.61	0					25	21	2	0	0	0	0.25281	1	4437	4437		6.7232	0	1	17532			3524	4747	2422	2436	4576	4576					-0.055757517611937146
EYLPIGGLAEF	11	Unmodified	_EYLPIGGLAEF_					0	0	0		ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENSG00000125166|ENST00000245206|GOT2	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8140258789062	2	604.813522	1207.61249	0.50348	0.00030451	0.18686	0.00011302	0.69035	0.00041753	604.8135331890824	90.35	0.61671	90.35	90.168	90.785	0					71	23	4	0	0	0	0.0099021	3	22594	22594;22642;22686		128.93	97.664	1	1245100			3525	2283	2423	2437	4577;4578;4579	4577					0.016988615833724907
EYLPIGGLAEF	11	Unmodified	_EYLPIGGLAEF_					0	0	0		ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENSG00000125166|ENST00000245206|GOT2	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.812744140625	2	604.813522	1207.61249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.77	1	90.77	90.27	91.27	0								0	0	0	0.29341	1	22738	22738		15.248	7.9593	1				3526	2283	2423	2437	4580	4580					0.016988615833724907
EYLPIGGLAEF	11	Unmodified	_EYLPIGGLAEF_					0	0	0		ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENSG00000125166|ENST00000245206|GOT2	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.8135375976562	2	604.813522	1207.61249	0.35237	0.00021312	0.37406	0.00022623	0.72643	0.00043935	604.8136482163914	90.374	0.65285	90.408	90.143	90.796	0.034065					87	27	5	0	0	0	0.0049813	3	22417	22417;22464;22513		128.93	97.664	1	1140000			3527	2283	2423	2437	4581;4582;4583	4581					0.016988615833724907
EYLQLLNLL	9	Unmodified	_EYLQLLNLL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8265380859375	2	559.826432	1117.63831	0.33766	0.00018903	-0.19381	-0.0001085	0.14385	8.053E-05	559.8263410586859	102.58	0.68474	102.58	102.36	103.04	0					128	46	4	0	0	0	1.7199E-05	4	26314	26274;26314;26357;26399		142.08	67.151	1	2022200			3528	1892	2424	2438	4584;4585;4586;4587	4585					0.08419755825661923
EYLQLLNLL	9	Unmodified	_EYLQLLNLL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8265991210938	2	559.826432	1117.63831	0.55577	0.00031114	-0.41215	-0.00023073	0.14363	8.0406E-05	559.8261822199762	102.54	0.57356	102.58	102.33	102.9	0.040916					137	42	4	0	0	0	3.513E-06	3	26134	26134;26173;26212		155.03	62.535	1	2129800			3529	1892	2424	2438	4588;4589;4590	4588					0.08419755825661923
EYLQTLRVP	9	Unmodified	_EYLQTLRVP_					0	0	0			REV__ENST00000546255.1_1_11:63979177-63987262:+|nuORF	REV__ENST00000546255.1_1_11:63979177-63987262:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2879028320312	2	559.813856	1117.61316	0.27102	0.00015172	-0.52913	-0.00029621	-0.25811	-0.00014449	559.8139855203794	50.35	0.19751	50.35	50.206	50.404	0					9	6	2	0	0	0	0.22289	1	10418	10418		18.135	0	1	33673	+		3530	9621	2425	2439	4591	4591					0.05905701023107213
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.3558959960938	2	619.356222	1236.69789	-0.050374	-3.12E-05	0.13281	8.2254E-05	0.082431	5.1054E-05	619.3562251400248	60.98	0.69788	60.98	60.779	61.477	0					55	24	3	0	0	0	0.018907	1	13660	13660		72.968	25.374	1	531030			3531	2802	2426	2440	4592	4592					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.2398376464844	3	413.239907	1236.69789	0.065814	2.7197E-05	-0.062377	-2.5777E-05	0.0034368	1.4202E-06	413.23986367221033	60.877	0.77919	60.951	60.689	61.469	0.073421					92	27	4	0	0	0	0.088609	3	13464	13464;13509;13554		34.932	18.366	1	1765500			3532	2802	2426	2440	4593;4594;4595	4593					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3563232421875	2	619.356222	1236.69789	-0.095138	-5.8925E-05	0.30125	0.00018658	0.20611	0.00012766	619.3562548925797	60.835	0.64117	60.908	60.747	61.388	0.073421					51	21	4	0	0	0	0.026931	2	13476	13476;13527		57.722	17.483	1	425630			3533	2802	2426	2440	4596;4597	4596					0.08901071559716911
EYLSRHWLF	9	Unmodified	_EYLSRHWLF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.8201293945312	2	625.819473	1249.62439	0.2203	0.00013787	1.2719	0.00079595	1.4922	0.00093382	625.8196621886905	60.69	0.52772	60.69	60.558	61.086	0					36	18	3	0	0	0	0.034267	2	13570	13570;13619		59.368	41.222	1	325910			3534	1908	2427	2441	4598;4599	4598					0.009565231172246058
EYLSRHWLF	9	Unmodified	_EYLSRHWLF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.5486145019531	3	417.548741	1249.62439	0.057839	2.4151E-05	-0.15904	-6.6408E-05	-0.1012	-4.2257E-05	417.5486109686271	60.595	1.0075	60.669	60.427	61.435	0.073421					108	34	4	0	0	0	0.1646	5	13422	13375;13422;13463;13564;13630		22.658	14.503	1	1828500			3535	1908	2427	2441	4600;4601;4602;4603;4604	4601					0.009565231172246058
EYLSRHWLF	9	Unmodified	_EYLSRHWLF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.820068359375	2	625.819473	1249.62439	0.19691	0.00012323	0.75492	0.00047244	0.95183	0.00059568	625.819609346255	60.576	0.5874	60.649	60.523	61.11	0.073418					31	20	2	0	0	0	0.031932	1	13410	13410		53.404	26.52	1	449410			3536	1908	2427	2441	4605	4605					0.009565231172246058
EYLSRHWLF	9	Unmodified	_EYLSRHWLF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.5484924316406	3	417.548741	1249.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.531	1	61.605	61.105	62.105	0.073421								0	0	0	0.27152	1	13685	13685		4.897	1.0207	1				3537	1908	2427	2441	4606	4606					0.009565231172246058
EYLSYLLNF	9	Unmodified	_EYLSYLLNF_					0	0	0		ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2936401367188	2	581.294965	1160.57538	0.48357	0.0002811	-0.43519	-0.00025297	0.048382	2.8124E-05	581.7962325391632	96.366	0.29973	96.366	96.187	96.486	0					20	14	2	0	0	0	0.026209	2	24439	24439;24459		53.833	28.433	1	124900			3538	4482	2428	2442	4607;4608	4607					0.001511900376272024
EYLSYLLNF	9	Unmodified	_EYLSYLLNF_					0	0	0		ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.294677734375	2	581.294965	1160.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.321	1	96.361	95.861	96.861	0.039772								0	0	0	0.059996	1	24270	24270		45.7	20.3	1				3539	4482	2428	2442	4609	4609					0.001511900376272024
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3174438476562	2	554.816064	1107.61758	-0.17459	-9.6864E-05	0.24028	0.00013331	0.06569	3.6446E-05	554.8161043496085	40.719	0.5443	40.719	40.53	41.075	0					57	18	4	0	0	0	0.0097877	3	7491	7491;7537;7586		67.838	27.888	1	421660			3540	3052	2429	2443	4610;4611;4612	4610					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8161010742188	2	554.816064	1107.61758	0.057258	3.1768E-05	0.087476	4.8533E-05	0.14473	8.0301E-05	554.8160560323649	40.612	0.59045	40.702	40.477	41.067	0.089645					53	22	3	0	0	0	0.0056336	2	7379	7330;7379		80.676	36.904	1	326020			3541	3052	2429	2443	4613;4614	4614					0.06807165446002728
EYLTYSLKL	9	Unmodified	_EYLTYSLKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3106079101562	2	565.310615	1128.60668	0.62668	0.00035427	-0.24575	-0.00013893	0.38093	0.00021534	565.3103938569374	65.664	0.56388	65.664	65.372	65.936	0					65	20	4	0	0	0	0.0046221	1	15078	15078		86.332	48.156	1	1222200			3542	1994	2430	2444	4615	4615					0.04751763071703863
EYLTYSLKL	9	Unmodified	_EYLTYSLKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3107299804688	2	565.310615	1128.60668	0.47345	0.00026765	-0.10462	-5.9145E-05	0.36883	0.0002085	565.3104571701505	65.574	0.57493	65.641	65.45	66.025	0.066872					72	22	4	0	0	0	0.00087611	1	14920	14920		125.53	65.455	1	1538300			3543	1994	2430	2444	4616	4616					0.04751763071703863
EYLYFFRVL	9	Unmodified	_EYLYFFRVL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.333251953125	2	625.334424	1248.6543	0.46427	0.00029032	-0.3894	-0.0002435	0.074873	4.682E-05	625.3339525337811	85.001	0.52483	85.001	84.786	85.311	0					43	18	4	0	0	0	0.00081324	2	20957	20957;21002		126.57	82.708	1	507480			3544	1411	2431	2445	4617;4618	4617					0.039914620625495445
EYLYFFRVL	9	Unmodified	_EYLYFFRVL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.8362426757812	2	625.334424	1248.6543	0.57581	0.00036008	-0.40951	-0.00025608	0.1663	0.000104	625.835549883232	84.966	0.45794	84.989	84.812	85.27	0.023132					36	17	3	0	0	0	0.0021834	3	20788	20788;20835;20885		114.65	70.791	1	323930			3545	1411	2431	2445	4619;4620;4621	4619					0.039914620625495445
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(120)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7841186523438	2	606.783907	1211.55326	0.29976	0.00018189	-0.16343	-9.917E-05	0.13633	8.272E-05	606.7838473114348	58.562	2.4128	58.562	58.256	60.669	0					257	90	5	0	0	0	0.0017019	3	12908	12908;12966;12984		117.6	90.715	1	1587900			3546	2483	2432	2446	4622;4623;4624	4622		158			-0.04405357702466972
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(100)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7840576171875	2	606.783907	1211.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.16	1	57.16	56.66	57.66	0								0	0	0	2.415E-05	1	12497	12497		101.72	74.838	1				3547	2483	2432	2446	4625	4625		158			-0.04405357702466972
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(78)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7842407226562	2	606.783907	1211.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.317	1	57.317	56.817	57.817	0								0	0	0	0.0036488	1	12545	12545		77.984	45.199	1				3548	2483	2432	2446	4626	4626		158			-0.04405357702466972
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(47)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7842407226562	2	606.783907	1211.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.49	1	57.49	56.99	57.99	0								0	0	0	0.05608	1	12597	12597		46.921	20.037	1				3549	2483	2432	2446	4627	4627		158			-0.04405357702466972
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(74)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7843017578125	2	606.783907	1211.55326	0.80441	0.0004881	-0.12314	-7.4718E-05	0.68127	0.00041338	606.7837293140523	57.135	0.99517	57.203	56.945	57.941	0.068375					103	38	4	0	0	0	0.0076571	3	12332	12332;12376;12422		74.423	47.539	1	1427800			3550	2483	2432	2446	4628;4629;4630	4628		158			-0.04405357702466972
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(120)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.783935546875	2	606.783907	1211.55326	0.59578	0.00036151	-0.38206	-0.00023183	0.21371	0.00012968	606.7836472574319	58.45	3.1216	58.521	57.699	60.82	0.070477					275	117	4	0	0	0	0.0017019	2	12778	12734;12778		117.6	90.715	1	1527300			3551	2483	2432	2446	4631;4632	4632		158			-0.04405357702466972
EYMEHVYLI	9	Unmodified	_EYMEHVYLI_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7866821289062	2	598.78645	1195.55835	0.53744	0.00032181	-0.36524	-0.0002187	0.17219	0.00010311	599.2876372454533	64.289	1.1665	64.289	63.998	65.165	0					104	41	5	0	0	0	0.083504	1	14661	14661		36.044	20.197	1	434080			3552	2483	2432	2447	4633	4633					-0.03161053839835404
EYMEHVYLI	9	Unmodified	_EYMEHVYLI_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2883911132812	2	598.78645	1195.55835	0.38979	0.0002334	-0.34437	-0.0002062	0.045423	2.7199E-05	599.2877635264565	64.248	0.99025	64.319	63.999	64.989	0.071022					72	35	3	0	0	0	0.045114	2	14494	14494;14608		44.407	25.15	1	513680			3553	2483	2432	2447	4634;4635	4634					-0.03161053839835404
EYMEHVYLI	9	Unmodified	_EYMEHVYLI_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	598.78645	1195.55835	0.53744	0.00032181	-0.36524	-0.0002187	0.17219	0.00010311	599.2876372454533	64.289	1.1665	64.289	63.998	65.165	0	-0.014986	-8.8231E-06	NaN	44.407	104	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434080			3554	2483	2432	2447							-0.03161053839835404
EYNAFFYSL	9	Unmodified	_EYNAFFYSL_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000491292.5_1_2:128018779-128018920:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.263427734375	2	577.263665	1152.51278	0.44332	0.00025591	-0.42982	-0.00024812	0.013505	7.7958E-06	577.2632530464635	86.117	0.80066	86.142	85.869	86.67	0.025169					62	30	3	0	0	0	7.6155E-09	1	21180	21180		163.04	106.86	1	978370			3555	3882	2433	2448	4636	4636					-0.05737956030566238
EYNAFFYSL	9	Unmodified	_EYNAFFYSL_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000491292.5_1_2:128018779-128018920:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	577.263665	1152.51278	0.26379	0.00015228	-0.21565	-0.00012449	0.048143	2.7791E-05	577.2633510677928	86.168	0.68159	86.168	85.931	86.613	0	0.013026	0.00014175	NaN	163.04	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1325800			3556	3882	2433	2448							-0.05737956030566238
EYNFEEEE	8	Unmodified	_EYNFEEEE_					0	0	0		tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2957153320312	2	544.706377	1087.3982	0.082996	4.5208E-05	-1.033	-0.00056269	-0.95002	-0.00051748	544.705788368214	21.836	0.3278	21.938	21.794	22.122	0.10178					51	36	2	0	0	0	0.3576	1	1832	1832		0.79363	0	1	21903			3557	13648	2434	2449	4637	4637					-0.1420031030318114
EYNILVNFF	9	Unmodified	_EYNILVNFF_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.79541015625	2	579.795132	1157.57571	0.50722	0.00029408	-0.057497	-3.3337E-05	0.44972	0.00026075	579.7951176170338	100.27	1.9128	100.27	99.828	101.74	0					275	112	5	0	0	0	1.0594E-10	10	25608	25568;25608;25647;25692;25737;25769;25784;25836;25841;25849		176.84	124.57	1	4631300			3558	1338	2435	2450	4638;4639;4640;4641;4642;4643;4644;4645;4646;4647	4639					0.0032260975747249176
EYNILVNFF	9	Unmodified	_EYNILVNFF_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7955322265625	2	579.795132	1157.57571	0.63657	0.00036908	-0.20207	-0.00011716	0.4345	0.00025192	579.7950232209779	100.17	1.4668	100.21	99.845	101.31	0.042839					220	75	5	0	0	0	1.0594E-10	10	25449	25408;25449;25490;25531;25566;25568;25615;25631;25659;25719		176.84	124.57	1	5221600			3559	1338	2435	2450	4648;4649;4650;4651;4652;4653;4654;4655;4656;4657	4649					0.0032260975747249176
EYNILVNFF	9	Unmodified	_EYNILVNFF_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2919311523438	2	579.795132	1157.57571	0.58906	0.00034153	-0.36784	-0.00021327	0.22122	0.00012826	579.7947456452598	101.6	0.12733	101.65	101.62	101.75	0.042656					12	9	2	0	0	0	0.25746	1	25889	25889		3.2813	0.97858	1	51453			3560	1338	2435	2450	4658	4658					0.0032260975747249176
EYNNIFHTF	9	Unmodified	_EYNNIFHTF_					0	0	0		ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.7718505859375	2	592.772188	1183.52982	0.45419	0.00026923	-1.1507	-0.00068212	-0.69654	-0.00041289	592.7715202236806	62.936	0.42038	62.936	62.722	63.142	0					30	16	3	0	0	0	0.005983	1	14238	14238		79.596	67.356	1	365940			3561	7074	2436	2451	4659	4659					-0.05460035424766829
EYNNIFHTF	9	Unmodified	_EYNNIFHTF_					0	0	0		ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.7717895507812	2	592.772188	1183.52982	0.39471	0.00023398	-0.48936	-0.00029008	-0.094642	-5.6101E-05	592.7717470028347	62.824	0.43467	62.897	62.687	63.122	0.072701					22	16	2	0	0	0	0.098463	1	14089	14089		32.786	22.712	1	268930			3562	7074	2436	2451	4660	4660					-0.05460035424766829
EYNNIQHLF	9	Unmodified	_EYNNIQHLF_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7597045898438	2	589.285463	1176.55637	0.19358	0.00011407	-0.10521	-6.1998E-05	0.08837	5.2075E-05	589.2856563513502	58.373	0.21702	58.373	58.256	58.473	0					12	8	2	0	0	0	0.16944	1	12849	12849		30.637	10.183	1	147900			3563	4003	2437	2452	4661	4661					-0.024843465334242865
EYNNIQHLF	9	Unmodified	_EYNNIQHLF_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.80126953125	2	589.285463	1176.55637	0.31233	0.00018405	0.57918	0.0003413	0.89151	0.00052535	589.2854614813674	58.187	0.16383	58.187	58.053	58.217	0					11	5	3	0	0	0	0.24263	1	12804	12804		12.532	2.4576	1	147170			3564	4003	2437	2452	4662	4662					-0.024843465334242865
EYNNIQHLF	9	Unmodified	_EYNNIQHLF_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8013305664062	2	589.285463	1176.55637	0.43658	0.00025727	0.54194	0.00031936	0.97852	0.00057663	589.2856705363196	58.258	0.33317	58.329	58.082	58.415	0.070477					17	12	2	0	0	0	0.22289	1	12680	12680		18.135	18.135	1	89339			3565	4003	2437	2452	4663	4663					-0.024843465334242865
EYNPYSWNL	9	Unmodified	_EYNPYSWNL_					0	0	0		ENSG00000064601|ENST00000646241|CTSA;ENST00000607814.5_1_20:44520477-44520965:+|nuORF	ENSG00000064601|ENST00000646241|CTSA	ENSG00000064601|ENST00000646241|CTSA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7633666992188	2	593.264196	1184.51384	0.41001	0.00024325	-4.0144	-0.0023816	-3.6044	-0.0021384	593.2606863394786	75.391	0.50327	75.391	75.148	75.652	0					43	19	3	0	0	0	0.17382	1	18080	18080		21.59	2.2282	1	471180			3566	666	2438	2453	4664	4664					-0.07103741661671847
EYNPYSWNL	9	Unmodified	_EYNPYSWNL_					0	0	0		ENSG00000064601|ENST00000646241|CTSA;ENST00000607814.5_1_20:44520477-44520965:+|nuORF	ENSG00000064601|ENST00000646241|CTSA	ENSG00000064601|ENST00000646241|CTSA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	593.264196	1184.51384	0.34049	0.000202	-4.4291	-0.0026276	-4.0886	-0.0024256	593.2605178479683	75.381	0.41052	75.425	75.209	75.619	0.044037	0.017228	-0.00020106	NaN	21.59	47	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659140			3567	666	2438	2453							-0.07103741661671847
EYPAWFEQF	9	Unmodified	_EYPAWFEQF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.8472290039062	2	608.769114	1215.52368	0.63786	0.00038831	-0.36526	-0.00022236	0.2726	0.00016595	608.7689461804976	88.059	0.54729	88.059	87.855	88.402	0					36	19	3	0	0	0	0.055289	1	21960	21960		53.404	38.999	1	299660			3568	5392	2439	2454	4665	4665					-0.07546553656311517
EYPAWFEQF	9	Unmodified	_EYPAWFEQF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.7702026367188	2	608.769114	1215.52368	0.53205	0.00032389	-0.044658	-2.7186E-05	0.48739	0.00029671	608.7693467054125	88.08	0.50554	88.11	87.906	88.411	0.030037					38	17	3	0	0	0	0.010235	1	21750	21750		66.457	35.188	1	249390			3569	5392	2439	2454	4666	4666					-0.07546553656311517
EYPDPSNLSL	10	Unmodified	_EYPDPSNLSL_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8314208984375	2	567.769311	1133.52407	0.45274	0.00025705	-2.0299	-0.0011525	-1.5772	-0.00089548	567.7678807463726	100.03	0.12717	100.08	100.02	100.15	0.042831					6	5	2	0	0	0	0.31803	1	25416	25416		3.2813	0	1	31980	+		3570	10822	2440	2455	4667	4667					-0.03735178727083621
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.2979125976562	2	643.297713	1284.58087	-0.05106	-3.2847E-05	0.1279	8.2276E-05	0.076838	4.943E-05	643.29787144791	58.835	2.6758	58.835	58.542	61.218	0					265	99	5	0	0	0	2.8057E-23	13	13000	12956;13000;13041;13085;13131;13174;13220;13277;13333;13390;13436;13467;13512		202.97	147.47	1	6233700			3571	5708;5147	2441	2456	4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680	4669					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.2979125976562	2	643.297713	1284.58087	0.099141	6.3777E-05	-0.041596	-2.6759E-05	0.057544	3.7018E-05	643.2977550066778	58.758	2.0684	58.828	58.533	60.602	0.070477					214	77	4	0	0	0	3.7289E-16	11	12850	12802;12850;12899;12942;12994;13042;13091;13153;13205;13214;13274		182.24	132.68	1	5392300			3572	5708;5147	2441	2456	4681;4682;4683;4684;4685;4686;4687;4688;4689;4690;4691	4682					-0.050034544422260296
EYPFILDAF	9	Unmodified	_EYPFILDAF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.776611328125	2	557.776408	1113.53826	0.69492	0.00038761	-0.37203	-0.00020751	0.32288	0.0001801	557.7763099646329	98.178	1.4042	98.178	97.839	99.244	0					240	85	5	0	0	0	0.0042542	2	25042	25042;25085		100.37	56.118	1	10166000			3573	531	2442	2457	4692;4693	4692					-0.013964815081408233
EYPFILDAF	9	Unmodified	_EYPFILDAF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.776611328125	2	557.776408	1113.53826	0.7589	0.0004233	-0.45767	-0.00025528	0.30123	0.00016802	557.776286317334	98.052	0.95619	98.094	97.802	98.758	0.041931					170	50	5	0	0	0	0.0012363	1	24892	24892		120.45	80.501	1	8643300			3574	531	2442	2457	4694	4694					-0.013964815081408233
EYPGVYQQF	9	Unmodified	_EYPGVYQQF_					0	0	0			REV__nc|ENSG00000115705|P07202-6|TPO	REV__nc|ENSG00000115705|P07202-6|TPO	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.3076782226562	2	565.761289	1129.50803	0.25233	0.00014276	-0.68159	-0.00038562	-0.42926	-0.00024286	565.7609704407475	71.523	0.30164	71.582	71.378	71.68	0.058578					17	10	2	0	0	0	0.22912	1	16720	16720		18.146	1.0335	1	220380	+		3575	8793	2443	2458	4695	4695					-0.051548401733498395
EYPICVLM	8	Unmodified	_EYPICVLM_					0	0	0		ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.2360534667969	2	484.235007	966.455461	-0.011603	-5.6188E-06	1.7774	0.00086066	1.7658	0.00085505	484.23631170386307	78.52	0.42451	78.52	78.305	78.73	0					35	14	3	0	0	0	0.53257	1	18992	18992		6.3541	0.59368	1	127580			3576	4344	2444	2459	4696	4696					-0.029108378321552664
EYPICVLM	8	Unmodified	_EYPICVLM_					0	0	0		ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7963562011719	2	484.235007	966.455461	0.14403	6.9744E-05	1.6619	0.00080477	1.806	0.00087451	484.2361727995302	78.493	0.57396	78.523	78.138	78.712	0.030151					37	19	3	0	0	0	0.51202	2	18819	18819;18875		11.114	4.7604	1	169060			3577	4344	2444	2459	4697;4698	4697					-0.029108378321552664
EYPKIRTF	8	Unmodified	_EYPKIRTF_					0	0	0		ENST00000492026.4_1_14:74507337-74544940:+|nuORF;ENSG00000119636|ENST00000394009|BBOF1	ENST00000492026.4_1_14:74507337-74544940:+|nuORF	ENST00000492026.4_1_14:74507337-74544940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2898559570312	2	527.290017	1052.56548	-0.015171	-7.9993E-06	0.26491	0.00013968	0.24974	0.00013168	527.2901659649864	72.696	0.61646	72.696	72.499	73.115	0					44	21	3	0	0	0	0.49441	1	17261	17261		13.508	0	1	269480			3578	2076	2445	2460	4699	4699					0.04130046822888289
EYPLSCFALF	10	Unmodified	_EYPLSCFALF_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3775634765625	2	595.283543	1188.55253	0.076134	4.5321E-05	0.61779	0.00036776	0.69393	0.00041308	595.2840708479773	104.19	0.53078	104.19	104.01	104.54	0					98	50	3	0	0	0	0.31456	1	26774	26774		14.838	7.549	1	123870			3579	2267	2446	2461	4700	4700					-0.03420152351509387
EYPLSCFALF	10	Unmodified	_EYPLSCFALF_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.28369140625	2	595.283543	1188.55253	0.22573	0.00013437	0.43068	0.00025638	0.65641	0.00039075	595.2837381167514	104.15	0.49696	104.19	104.02	104.52	0.03791					75	47	3	0	0	0	0.27491	1	26662	26662		30.637	19.813	1	222860			3580	2267	2446	2461	4701	4701					-0.03420152351509387
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602574.5_1_10:22607528-22607842:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8004760742188	2	568.800946	1135.58734	-0.40749	-0.00023178	0.016537	9.4061E-06	-0.39095	-0.00022237	568.80090140701	42.604	0.66853	42.604	42.395	43.063	0					57	22	4	0	0	0	0.0028522	2	8070	8070;8119		110.55	54.376	1	350040			3581	3366	2447	2462	4702;4703	4702					0.02496806780800398
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602574.5_1_10:22607528-22607842:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8004150390625	2	568.800946	1135.58734	-0.24359	-0.00013856	-0.015002	-8.533E-06	-0.25859	-0.00014709	568.8008812041526	42.526	0.55344	42.616	42.401	42.955	0.089767					50	20	4	0	0	0	0.0040167	2	7907	7907;7952		103.42	49.587	1	312110			3582	3366	2447	2462	4704;4705	4704					0.02496806780800398
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2667236328125	2	543.266739	1084.51892	0.14738	8.0068E-05	0.15391	8.3615E-05	0.30129	0.00016368	543.2670883110944	35.53	0.7938	35.53	35.361	36.155	0					56	29	3	0	0	0	0.11816	3	5942	5933;5942;5990		28.495	12.345	1	93263			3583	4761	2448	2463	4706;4707;4708	4707					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2666015625	2	543.266739	1084.51892	0.2091	0.0001136	0.19568	0.00010631	0.40479	0.00021991	543.2668941430638	35.476	0.56154	35.554	35.382	35.943	0.078827					38	20	3	0	0	0	0.22083	1	5799	5799		16.149	8.8599	1	144830			3584	4761	2448	2463	4709	4709					-0.019954377990416106
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.8143920898438	2	613.813856	1225.61316	0.11808	7.248E-05	-0.26212	-0.00016089	-0.14404	-8.8413E-05	613.8141528428104	70.946	2.6087	70.946	70.675	73.284	0					323	91	7	0	0	0	1.6001E-05	6	16649	16649;16695;16740;16789;16833;16885		157.8	123.39	1	28568000			3585	634	2449	2464	4710;4711;4712;4713;4714;4715	4710					0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.8141479492188	2	613.813856	1225.61316	-0.12638	-7.7575E-05	0.042379	2.6013E-05	-0.084003	-5.1562E-05	613.8136827504788	73.595	1.2746	73.595	73.202	74.477	0					73	46	2	0	0	0	0.1019	1	17516	17516		41.84	28.797	1	253580			3586	634	2449	2464	4716	4716					0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.27685546875	2	613.813856	1225.61316	0.15366	9.432E-05	-0.011053	-6.7845E-06	0.14261	8.7535E-05	613.8140543784418	74.929	0.67158	74.929	74.477	75.148	0					36	24	2	0	0	0	0.2418	1	17857	17857		13.906	3.0821	1	184200			3587	634	2449	2464	4717	4717					0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.8142700195312	2	613.813856	1225.61316	0.31126	0.00019106	-0.33939	-0.00020832	-0.028128	-1.7265E-05	613.8140125246773	70.855	2.6537	70.914	70.647	73.3	0.058578					325	95	7	0	0	0	1.6001E-05	5	16513	16474;16513;16561;16608;16662		157.8	127.16	1	19068000			3588	634	2449	2464	4718;4719;4720;4721;4722	4719					0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	613.813856	1225.61316	0.16107	9.8864E-05	-0.017843	-1.0953E-05	0.14322	8.7912E-05	613.8141060066336	74.921	0.27374	74.965	74.812	75.085	0.044037	0.018148	-6.7011E-06	NaN	13.906	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73458			3589	634	2449	2464							0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	613.813856	1225.61316	0.14941	9.1713E-05	0.38957	0.00023912	0.53899	0.00033084	613.8140487974757	73.831	0.29748	73.881	73.72	74.017	0.049873	0.14324	0.0003357	NaN	41.84	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128630			3590	634	2449	2464							0.009377010230764427
EYQQAQHKF	9	Unmodified	_EYQQAQHKF_					0	0	0		ENST00000568870.1_1_16:89958640-89960287:+|nuORF;ENSG00000141002|ENST00000263346|TCF25	ENST00000568870.1_1_16:89958640-89960287:+|nuORF	ENST00000568870.1_1_16:89958640-89960287:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2461547851562	2	589.783087	1177.55162	0.79412	0.00046836	-3.8095	-0.0022468	-3.0154	-0.0017784	590.2826481518039	66.41	0.3239	66.477	66.28	66.604	0.066872					16	11	2	0	0	0	0.25281	1	15184	15184		6.7232	1.4925	1	103870			3591	3039	2450	2465	4723	4723					-0.03005230676217252
EYRDWWTK	8	Unmodified	_EYRDWWTK_					0	0	0			REV__ENST00000442740.1_2_3:48475374-48481489:-|nuORF	REV__ENST00000442740.1_2_3:48475374-48481489:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2998046875	2	592.28018	1182.54581	0.41168	0.00024383	-0.17448	-0.00010334	0.2372	0.00014049	592.2801436106521	55.807	1.2839	55.807	55.441	56.725	0					129	46	5	0	0	0	0.46036	2	12063	12063;12083		18.135	18.135	1	765840	+		3592	9975	2451	2466	4724;4725	4724					-0.038163291878845484
EYRKNEQF	8	Unmodified	_EYRKNEQF_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2820434570312	2	557.269813	1112.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.983	1	42.072	41.572	42.572	0.089764								0	0	0	0.38822	1	7764	7764		5.2307	0.90143	1		+		3593	8674	2452	2467	4726	4726					-0.026689195675317023
EYSFYSDESL	10	Unmodified	_EYSFYSDESL_					0	0	0		ENST00000434918.6_1_2:162888774-162891808:-|nuORF;ENSG00000197635|ENST00000360534|DPP4	ENST00000434918.6_1_2:162888774-162891808:-|nuORF	ENST00000434918.6_1_2:162888774-162891808:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.271484375	2	620.256234	1238.49791	-0.22359	-0.00013868	0.18702	0.000116	-0.036572	-2.2684E-05	620.2562447416897	48.988	0.42623	48.988	48.888	49.314	0					20	14	2	0	0	0	0.42335	1	10053	10053		9.3831	4.0862	1	69483			3594	5311	2453	2468	4727	4727					-0.11179492689211656
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8003540039062	2	546.800414	1091.58628	0.39274	0.00021475	0.44527	0.00024347	0.83801	0.00045822	546.8005758284347	74.44	0.45762	74.44	74.31	74.767	0					32	16	3	0	0	0	0.026209	1	17759	17759		53.833	17.706	1	227180			3595	5666	2454	2469	4728	4728					0.04414592411899321
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7998657226562	2	546.800414	1091.58628	0.44934	0.0002457	0.24696	0.00013504	0.6963	0.00038074	546.8003642096476	74.445	0.44019	74.494	74.287	74.727	0.048546					31	15	3	0	0	0	0.013982	1	17589	17589		62.573	20.733	1	206900			3596	5666	2454	2469	4729	4729					0.04414592411899321
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.1971740722656	3	406.197491	1215.57064	0.069349	2.817E-05	-0.40318	-0.00016377	-0.33383	-0.0001356	406.1972189734732	29.445	0.48394	29.445	29.252	29.736	0					56	26	3	0	0	0	0.32163	1	4120	4120		3.8763	3.0998	1	68536			3597	1956;5238	2455	2470	4730	4730					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.1973876953125	3	406.197491	1215.57064	-0.29892	-0.00012142	0.2482	0.00010082	-0.050718	-2.0601E-05	406.1975142165993	29.375	0.51699	29.453	29.289	29.806	0.078287					62	29	3	0	0	0	0.2828	1	3980	3980		8.9762	6.8902	1	114270			3598	1956;5238	2455	2470	4731	4731					-0.028520173767901724
EYSKVLQFKYF	11	Unmodified	_EYSKVLQFKYF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.92523193359375	3	484.590494	1450.74965	0.097804	4.7395E-05	0.1485	7.1961E-05	0.2463	0.00011936	484.590320258036	61.162	0.47614	61.162	60.942	61.418	0					31	16	3	0	0	0	0.40087	1	13720	13720		4.1166	2.787	1	127700			3599	2415	2456	2471	4732	4732					0.04230770462936562
EYSKVLQFKYF	11	Unmodified	_EYSKVLQFKYF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2386169433594	3	484.590494	1450.74965	-0.0083798	-4.0608E-06	0.44754	0.00021687	0.43916	0.00021281	484.9249920135042	61.04	0.47756	61.113	60.91	61.388	0.073421					32	15	3	0	0	0	0.31079	1	13522	13522		4.1166	3.1031	1	118730			3600	2415	2456	2471	4733	4733					0.04230770462936562
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.8141479492188	2	638.814053	1275.61355	0.22785	0.00014556	0.13173	8.4151E-05	0.35958	0.00022971	638.813966997602	56.11	1.1079	56.11	55.866	56.974	0					83	40	3	0	0	0	2.0887E-05	4	12147	12147;12200;12253;12319		159.1	130.61	1	2005400			3601	3849	2457	2472	4734;4735;4736;4737	4734					-0.013229240477357962
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.814208984375	2	638.814053	1275.61355	0.17111	0.00010931	0.31972	0.00020424	0.49083	0.00031355	638.8140135303963	56.073	0.67399	56.14	55.869	56.543	0.066452					72	25	4	0	0	0	6.7436E-07	3	11998	11998;12041;12091		171.46	142.97	1	1466500			3602	3849	2457	2472	4738;4739;4740	4738					-0.013229240477357962
EYSLFPGQVVI	11	Unmodified	_EYSLFPGQVVI_					0	0	0		nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.334716796875	2	626.334621	1250.65469	-0.033434	-2.0941E-05	0.33897	0.00021231	0.30553	0.00019137	626.3346970303729	89.542	0.51503	89.542	89.296	89.811	0					45	19	3	0	0	0	0.21989	1	22350	22350		27.223	14.983	1	449490			3603	452	2458	2473	4741	4741					0.039388369917332966
EYSLFPGQVVI	11	Unmodified	_EYSLFPGQVVI_					0	0	0		nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3347778320312	2	626.334621	1250.65469	0.20219	0.00012664	0.17344	0.00010863	0.37562	0.00023527	626.3346046347766	89.462	0.47205	89.494	89.273	89.745	0.032265					43	17	3	0	0	0	0.30574	1	22192	22192		18.373	10.218	1	325290			3604	452	2458	2473	4742	4742					0.039388369917332966
EYSRSSVL	8	Unmodified	_EYSRSSVL_					0	0	0		ENST00000461888.5_1_1:160195382-160195415:-|nuORF	ENST00000461888.5_1_1:160195382-160195415:-|nuORF	ENST00000461888.5_1_1:160195382-160195415:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7403564453125	2	470.740357	939.46616	-0.12669	-5.964E-05	0.25345	0.00011931	0.12675	5.9667E-05	470.7403672462601	39.405	1.207	39.405	39.134	40.341	0					105	43	4	0	0	0	0.37119	2	7111	7111;7159		29.082	0.59474	1	831310			3605	6614	2459	2474	4743;4744	4743					-0.005993958618546458
EYSRSSVL	8	Unmodified	_EYSRSSVL_					0	0	0		ENST00000461888.5_1_1:160195382-160195415:-|nuORF	ENST00000461888.5_1_1:160195382-160195415:-|nuORF	ENST00000461888.5_1_1:160195382-160195415:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7402648925781	2	470.740357	939.46616	-0.10788	-5.0784E-05	0.29841	0.00014048	0.19053	8.9692E-05	470.7403656725568	39.299	1.1243	39.388	39.131	40.256	0.088562					102	45	4	0	0	0	0.43379	1	7006	7006		21.747	5.8995	1	704030			3606	6614	2459	2474	4745	4745					-0.005993958618546458
EYSSLFNDF	9	Unmodified	_EYSSLFNDF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8300170898438	2	561.242929	1120.47131	0.86885	0.00048764	0.50699	0.00028455	1.3758	0.00077218	561.2430205421907	80.496	0.67357	80.496	80.228	80.902	0					55	23	3	0	0	0	0.0051624	1	19599	19599		93.166	49.308	1	818190			3607	2860	2460	2475	4746	4746					-0.08411136789914053
EYSSLFNDF	9	Unmodified	_EYSSLFNDF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8302001953125	2	561.242929	1120.47131	0.79021	0.0004435	0.33826	0.00018984	1.1285	0.00063335	561.2429694635924	80.524	0.60869	80.548	80.273	80.882	0.023613					53	21	3	0	0	0	0.00017524	1	19434	19434		118.07	74.21	1	963810			3608	2860	2460	2475	4747	4747					-0.08411136789914053
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2998046875	2	511.30005	1020.58555	0.32481	0.00016608	-0.28067	-0.0001435	0.044143	2.257E-05	511.29981130610184	59.694	1.0523	59.694	59.481	60.533	0					105	39	4	0	0	0	0.0021834	4	13281	13241;13281;13330;13459		114.65	47.305	1	1509200			3609	1079	2461	2476	4748;4749;4750;4751	4749					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2999572753906	2	511.30005	1020.58555	0.18548	9.4836E-05	-0.22687	-0.000116	-0.041388	-2.1162E-05	511.29987280603217	59.637	1.0648	59.71	59.457	60.522	0.072342					94	39	3	0	0	0	0.0046499	3	13123	13079;13123;13171		85.272	39.251	1	1293200			3610	1079	2461	2476	4752;4753;4754	4753					0.07607797762852897
EYTPRSWNF	9	Unmodified	_EYTPRSWNF_					0	0	0		ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7593994140625	2	600.277638	1198.54072	0.46038	0.00027636	-0.53136	-0.00031896	-0.070974	-4.2604E-05	600.2768119674565	55.848	0.42664	55.848	55.608	56.035	0					31	14	3	0	0	0	0.24929	1	12079	12079		9.3831	3.1773	1	154960			3611	3633	2462	2477	4755	4755					-0.050606330504933794
EYTPRSWNF	9	Unmodified	_EYTPRSWNF_					0	0	0		ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.324951171875	2	600.277638	1198.54072	0.35356	0.00021223	-0.61643	-0.00037003	-0.26287	-0.00015779	600.2771235195758	55.806	0.36526	55.871	55.674	56.039	0.065128					25	12	3	0	0	0	0.25787	1	11898	11898		2.9952	0.26005	1	160210			3612	3633	2462	2477	4756	4756					-0.050606330504933794
EYTRALFLL	9	Unmodified	_EYTRALFLL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.31884765625	2	563.318774	1124.623	0.040706	2.293E-05	0.5989	0.00033737	0.63961	0.0003603	563.3190982804053	73.201	1.0334	73.201	72.973	74.006	0					92	36	5	0	0	0	0.0034016	3	17380	17354;17380;17423		107.19	58.841	1	3219500			3613	2442	2463	2478	4757;4758;4759	4758					0.06566889028476908
EYTRALFLL	9	Unmodified	_EYTRALFLL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3189086914062	2	563.318774	1124.623	0.21611	0.00012174	0.28241	0.00015908	0.49852	0.00028083	563.3189177544481	73.137	1.2094	73.19	72.951	74.16	0.052574					112	45	5	0	0	0	0.0046402	4	17232	17177;17186;17232;17272		85.642	37.296	1	3935400			3614	2442	2463	2478	4760;4761;4762;4763	4762					0.06566889028476908
EYTSILHLF	9	Unmodified	_EYTSILHLF_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7948608398438	2	561.795132	1121.57571	0.31005	0.00017418	-0.3933	-0.00022096	-0.083253	-4.6771E-05	561.7947371644688	78.131	0.49498	78.131	77.928	78.423	0					39	16	3	0	0	0	0.0042188	3	18878	18878;18939;18978		101.72	57.864	1	314270			3615	5410	2464	2479	4764;4765;4766	4764					0.019786097574751693
EYTSILHLF	9	Unmodified	_EYTSILHLF_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7949829101562	2	561.795132	1121.57571	0.54842	0.0003081	-0.42096	-0.00023649	0.12746	7.1605E-05	561.7947500225825	78.054	0.52513	78.086	77.877	78.402	0.031837					28	17	2	0	0	0	0.035878	2	18755	18710;18755		46.921	29.979	1	259110			3616	5410	2464	2479	4767;4768	4768					0.019786097574751693
EYTVRFTF	8	Unmodified	_EYTVRFTF_					0	0	0		ABCF1|p.P617L|1|0.18|ENSG00000204574|chr6:30586270-30586270|C/T|missense_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	ABCF1|p.P617L|1|0.18|ENSG00000204574|chr6:30586270-30586270|C/T|missense_variant	ABCF1|p.P617L|1|0.18|ENSG00000204574|chr6:30586270-30586270|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.266357421875	2	531.766374	1061.5182	0.60941	0.00032406	-0.50212	-0.00026701	0.10729	5.7052E-05	531.7661681811009	64.799	1.9365	64.799	63.972	65.909	0					156	69	4	0	0	0	0.53026	1	14719	14719		7.9102	0	1	943920			3617	2	2465	2480	4769	4769					-0.010102324480840252
EYVAFSLLW	9	Unmodified	_EYVAFSLLW_					0	0	0			REV__ENSG00000148841|ENST00000337478|ITPRIP	REV__ENSG00000148841|ENST00000337478|ITPRIP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.3090209960938	2	564.292225	1126.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.109	1	62.109	61.609	62.609	0								0	0	0	0.15603	1	14003	14003		24.674	2.9272	1		+		3618	9599	2466	2481	4770	4770					0.011675112458078729
EYVALGSFFF	10	Unmodified	_EYVALGSFFF_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2898559570312	2	590.289682	1178.56481	0.48276	0.00028497	-0.40667	-0.00024005	0.076088	4.4914E-05	590.2894687508749	100.84	0.42455	100.84	100.67	101.09	0					28	25	2	0	0	0	0.29844	1	25806	25806		22.736	9.6938	1	61685			3619	2049	2467	2482	4771	4771					-0.01732792616826373
EYVALGSFFF	10	Unmodified	_EYVALGSFFF_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2907104492188	2	590.289682	1178.56481	0.62065	0.00036637	-0.81239	-0.00047955	-0.19174	-0.00011318	590.2895209958958	100.8	0.29069	100.85	100.66	100.95	0.042831					30	17	2	0	0	0	0.38912	2	25655	25613;25655		13.042	6.8367	1	33019			3620	2049	2467	2482	4772;4773	4773					-0.01732792616826373
EYVCSKYARP	10	Unmodified	_EYVCSKYARP_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|108|2|anti-sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|108|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5018005371094	3	405.865741	1214.57539	-0.0095354	-3.8701E-06	1.5625	0.00063418	1.553	0.00063031	405.8667330248374	39.191	0.42783	39.28	39.105	39.533	0.088562					41	18	4	0	0	0	0.31803	1	6972	6972		1.5923	0.63001	1	44423	+		3621	13026	2468	2483	4774	4774					-0.023311332340426816
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8270874023438	2	623.826963	1245.63937	-0.096345	-6.0103E-05	0.13018	8.1212E-05	0.033838	2.1109E-05	623.8269704409131	48.823	1.3053	48.823	48.63	49.935	0					104	45	4	0	0	0	0.0016022	6	9971	9926;9971;10017;10067;10104;10151		140.63	82.911	1	1034000			3622	1805	2469	2484	4775;4776;4777;4778;4779;4780	4776					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2206115722656	3	416.220401	1245.63937	0.36971	0.00015388	-0.50251	-0.00020915	-0.1328	-5.5273E-05	416.22032493839856	48.818	2.4898	48.818	48.544	51.034	0					242	87	5	0	0	0	0.085487	11	9962	9962;10006;10051;10101;10163;10230;10248;10307;10438;10486;10549		35.612	18.17	1	5361600			3623	1805	2469	2484	4781;4782;4783;4784;4785;4786;4787;4788;4789;4790;4791	4781					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2278137207031	3	416.220401	1245.63937	0.35247	0.00014671	-0.10067	-4.1902E-05	0.2518	0.0001048	416.2202446293792	51.14	1.0084	51.14	50.795	51.804	0					82	33	4	0	0	0	0.25517	4	10598	10598;10630;10746;10801		12.175	7.6459	1	86266			3624	1805	2469	2484	4792;4793;4794;4795	4792					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.8270874023438	2	623.826963	1245.63937	0.010066	6.2794E-06	0.17064	0.00010645	0.18071	0.00011273	623.8269831441638	48.727	0.96394	48.804	48.604	49.568	0.076607					85	34	4	0	0	0	0.0042972	5	9823	9773;9823;9865;9912;9950		117.76	73.988	1	1094300			3625	1805	2469	2484	4796;4797;4798;4799;4800	4797					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2206115722656	3	416.220401	1245.63937	-0.039628	-1.6494E-05	-0.0082176	-3.4203E-06	-0.047845	-1.9914E-05	416.22051799242604	48.733	2.14	48.81	48.533	50.673	0.076607					198	75	4	0	0	0	0.13554	6	9814	9814;9856;9900;9948;10090;10224		26.021	15.87	1	5207700			3626	1805	2469	2484	4801;4802;4803;4804;4805;4806	4801					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2205505371094	3	416.220401	1245.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.915	1	50.985	50.485	51.485	0.069874								0	0	0	0.27786	1	10457	10457		3.5871	1.8448	1				3627	1805	2469	2484	4807	4807					0.02637970194564332
EYVFSVSTF	9	Unmodified	_EYVFSVSTF_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7584228515625	2	539.758215	1077.50188	0.83625	0.00045137	-0.6393	-0.00034507	0.19695	0.00010631	539.7582122601253	80.096	0.58711	80.096	79.869	80.456	0					45	19	3	0	0	0	0.015682	2	19473	19473;19523		61.357	32.871	1	492830			3628	3892	2470	2485	4808;4809	4808					-0.03377358404873121
EYVFSVSTF	9	Unmodified	_EYVFSVSTF_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7581176757812	2	539.758215	1077.50188	0.67232	0.00036289	-0.37509	-0.00020246	0.29724	0.00016044	539.7582007597501	80.023	0.5257	80.05	79.884	80.41	0.026436					43	18	3	0	0	0	0.015682	2	19303	19303;19353		61.357	32.871	1	403060			3629	3892	2470	2485	4810;4811	4810					-0.03377358404873121
EYVGVAARC	9	Unmodified	_EYVGVAARC_					0	0	0		ENST00000487350.5_1_1:155145426-155145600:-|nuORF	ENST00000487350.5_1_1:155145426-155145600:-|nuORF	ENST00000487350.5_1_1:155145426-155145600:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.236083984375	2	484.236927	966.459301	0.14403	6.9744E-05	-2.3029	-0.0011151	-2.1589	-0.0010454	484.2361727995302	78.493	0.57396	78.523	78.138	78.712	0.030151					37	19	3	0	0	0	0.30005	1	18826	18826		6.7232	0.36906	1	169060			3630	6789	2471	2486	4812	4812					-0.025270320140975855
EYVKYKEKG	9	Unmodified	_EYVKYKEKG_					0	0	0			REV__nc|ENSG00000122420|P43088-4|PTGFR	REV__nc|ENSG00000122420|P43088-4|PTGFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3257446289062	2	572.305864	1142.59717	0.55072	0.00031518	1.4057	0.00080446	1.9564	0.0011196	572.3065793211744	97.546	0.59879	97.546	97.461	98.06	0					33	29	2	0	0	0	0.32831	1	24813	24813		2.9952	0.49676	1	64244	+		3631	12782	2472	2487	4813	4813					0.03157994786170093
EYVRALFDF	9	Unmodified	_EYVRALFDF_					0	0	0		nc|ENSG00000167193|P46108-2|CRK;ENSG00000167193|ENST00000300574|CRK	nc|ENSG00000167193|P46108-2|CRK	nc|ENSG00000167193|P46108-2|CRK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2926025390625	2	580.292756	1158.57096	0.20279	0.00011768	0.073543	4.2677E-05	0.27633	0.00016035	580.292526292919	73.642	0.51241	73.642	73.464	73.977	0					41	17	3	0	0	0	0.00090591	3	17501	17501;17545;17592		125.04	79.338	1	738360			3632	4203	2473	2488	4814;4815;4816	4814					-0.0019827438529773644
EYVRALFDF	9	Unmodified	_EYVRALFDF_					0	0	0		nc|ENSG00000167193|P46108-2|CRK;ENSG00000167193|ENST00000300574|CRK	nc|ENSG00000167193|P46108-2|CRK	nc|ENSG00000167193|P46108-2|CRK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.2923583984375	2	580.292756	1158.57096	0.48577	0.00028189	-0.29984	-0.000174	0.18593	0.00010789	580.2923182026843	73.608	0.54587	73.66	73.42	73.966	0.052574					49	20	4	0	0	0	0.0045224	2	17331	17331;17378		90.135	46.277	1	730140			3633	4203	2473	2488	4817;4818	4817					-0.0019827438529773644
EYVRLVTEF	9	Unmodified	_EYVRLVTEF_					0	0	0		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3053588867188	2	578.305864	1154.59717	0.5025	0.0002906	-1.2164	-0.00070343	-0.71386	-0.00041283	578.3050718425181	63.015	0.4817	63.015	62.809	63.291	0					31	19	2	0	0	0	0.0081278	1	14283	14283		72.968	26.947	1	508940			3634	3044	2474	2489	4819	4819					0.02605994786199517
EYVRLVTEF	9	Unmodified	_EYVRLVTEF_					0	0	0		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3062133789062	2	578.305864	1154.59717	0.48053	0.00027789	-0.72878	-0.00042146	-0.24825	-0.00014357	578.3053123634631	62.93	0.39748	63.003	62.83	63.227	0.072701					28	16	3	0	0	0	0.0093779	1	14107	14107		69.105	23.084	1	348660			3635	3044	2474	2489	4820	4820					0.02605994786199517
EYVSQHLVF	9	Unmodified	_EYVSQHLVF_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7872924804688	2	561.284931	1120.55531	0.43633	0.00024491	0.027619	1.5502E-05	0.46395	0.00026041	561.2849919340831	57.278	0.903	57.278	57.065	57.968	0					70	31	3	0	0	0	0.013982	2	12514	12514;12557		62.573	37.173	1	575120			3636	2400	2475	2490	4821;4822	4821					-0.00014560902332050318
EYVSQHLVF	9	Unmodified	_EYVSQHLVF_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2847290039062	2	561.284931	1120.55531	0.50874	0.00028555	-0.34035	-0.00019103	0.16839	9.4517E-05	561.2847888653434	57.181	0.78162	57.25	57.043	57.825	0.068375					56	29	3	0	0	0	0.01063	2	12360	12360;12403		65.235	43.488	1	448520			3637	2400	2475	2490	4823;4824	4823					-0.00014560902332050318
EYVVRTFTL	9	Unmodified	_EYVVRTFTL_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.3090209960938	2	564.308406	1126.60226	0.31267	0.00017644	1.0685	0.00060298	1.3812	0.00077943	564.3090134898034	62.062	0.49373	62.062	61.898	62.392	0					59	19	4	0	0	0	4.9699E-07	1	14003	14003		136.39	92.534	1	847940			3638	3508	2476	2491	4825	4825					0.04402298648801661
EYVVRTFTL	9	Unmodified	_EYVVRTFTL_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	564.308406	1126.60226	0.32384	0.00018275	1.1724	0.00066158	1.4962	0.00084433	564.3088086516677	62.005	0.82656	62.079	61.861	62.688	0.073421	0.008181	9.7845E-05	NaN	136.39	64	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732510			3639	3508	2476	2491							0.04402298648801661
EYWLMWNP	8	Unmodified	_EYWLMWNP_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2559204101562	2	569.754953	1137.49535	-0.27326	-0.00015569	-1.2259	-0.00069846	-1.4992	-0.00085416	569.7542826512617	23.878	0.37066	23.878	23.72	24.09	0					45	31	2	0	0	0	0.54097	1	2517	2517		0.69038	0.088878	1	29589			3640	1745	2477	2492	4826	4826					-0.06789574837216605
EYWPGPNF	8	Unmodified	_EYWPGPNF_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.224609375	2	505.224342	1008.43413	0.11391	5.755E-05	0.12394	6.2617E-05	0.23785	0.00012017	505.22439423283794	89.584	0.33249	89.616	89.435	89.768	0.032265					15	12	2	0	0	0	0.53817	1	22224	22224		2.5775	0	1	63686			3641	3364	2478	2493	4827	4827					-0.06974763544985763
EYWPGPNF	8	Unmodified	_EYWPGPNF_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	505.224342	1008.43413	0.047964	2.4232E-05	0.098068	4.9547E-05	0.14603	7.3779E-05	505.2243306280705	89.605	0.31676	89.605	89.445	89.762	0	-0.0055805	-1.46E-05	NaN	2.5775	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84293			3642	3364	2478	2493							-0.06974763544985763
EYWSSFDDI	9	Unmodified	_EYWSSFDDI_					0	0	0		nc|ENSG00000183780|Q8IY50|SLC35F3;ENSG00000183780|ENST00000366618|SLC35F3	nc|ENSG00000183780|Q8IY50|SLC35F3	nc|ENSG00000183780|Q8IY50|SLC35F3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2403564453125	2	581.240386	1160.46622	0.34452	0.00020025	0.60626	0.00035238	0.95078	0.00055263	581.2406789650136	35.375	0.48209	35.454	35.279	35.761	0.078831					36	18	3	0	0	0	0.33704	1	5814	5814		1.8442	0.51471	1	102750			3643	4941	2479	2494	4828	4828					-0.10759440652509511
EYWVVARA	8	Unmodified	_EYWVVARA_					0	0	0		nc|ENSG00000214357|A8MQ27-2|NEURL1B;ENSG00000214357|ENST00000369800|NEURL1B	nc|ENSG00000214357|A8MQ27-2|NEURL1B	nc|ENSG00000214357|A8MQ27-2|NEURL1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.76446533203125	2	497.261259	992.507966	0.14966	7.442E-05	-3.5207	-0.0017507	-3.371	-0.0016763	497.25903445770024	21.401	0.21007	21.503	21.41	21.62	0.10178					28	20	2	0	0	0	0.3576	1	1752	1752		2.3027	0	1	14390			3644	5567	2480	2495	4829	4829					0.01141204617317726
EYWVVARA	8	Unmodified	_EYWVVARA_					0	0	0		nc|ENSG00000214357|A8MQ27-2|NEURL1B;ENSG00000214357|ENST00000369800|NEURL1B	nc|ENSG00000214357|A8MQ27-2|NEURL1B	nc|ENSG00000214357|A8MQ27-2|NEURL1B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	497.261259	992.507966	-0.18208	-9.0543E-05	-3.4829	-0.0017319	-3.665	-0.0018225	497.2593084120567	21.581	0.27027	21.581	21.44	21.71	0	0.039172	1.5764E-05	NaN	2.3027	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23237			3645	5567	2480	2495							0.01141204617317726
EYYDKHFTEF	10	Unmodified	_EYYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	460.20318603515625	3	460.203187	1377.58773	0.29072	0.00013379	-0.10751	-4.9476E-05	0.18321	8.4312E-05	460.2030604791174	48.642	1.0558	48.642	48.424	49.48	0					92	36	4	0	0	0	0.44671	1	9902	9902		5.4027	0.68679	1	742540			3646	1848	2481	2496	4830	4830					-0.08595818290018542
EYYDKHFTEF	10	Unmodified	_EYYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	460.2030944824219	3	460.203187	1377.58773	0.075184	3.46E-05	0.13872	6.384E-05	0.21391	9.844E-05	460.20321980993765	48.533	0.87119	48.613	48.414	49.285	0.080029					74	29	4	0	0	0	0.3639	1	9734	9734		15.739	11.023	1	770370			3647	1848	2481	2496	4831	4831					-0.08595818290018542
EYYKVETHF	9	Unmodified	_EYYKVETHF_					0	0	0			REV__ZNF132|p.R429Kfs*4|1|0.1|ENSG00000131849|chr19:58434158-58434159|-/T|frameshift_variant	REV__ZNF132|p.R429Kfs*4|1|0.1|ENSG00000131849|chr19:58434158-58434159|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7503051757812	2	608.287671	1214.56079	0.47673	0.00028999	0.74299	0.00045195	1.2197	0.00074194	608.78945099932	60.351	0.27297	60.424	60.306	60.578	0.073421					9	8	2	0	0	0	0.25845	1	13321	13321		2.0598	0	1	83896	+		3648	9099	2482	2497	4832	4832					-0.037908821105247625
EYYRGFTLF	9	Unmodified	_EYYRGFTLF_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2927856445312	2	598.292756	1194.57096	0.33675	0.00020148	-2.3784	-0.001423	-2.0417	-0.0012215	598.2931341338065	71.44	1.142	71.44	70.806	71.948	0					102	39	4	0	0	0	0.07372	2	16834	16834;16880		38.176	16.639	1	564960			3649	4773	2483	2498	4833;4834	4833					-0.018542743852776766
EYYRGFTLF	9	Unmodified	_EYYRGFTLF_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2929077148438	2	598.292756	1194.57096	0.29034	0.00017371	-0.96147	-0.00057524	-0.67113	-0.00040153	598.2932776970647	71.364	1.071	71.423	70.798	71.869	0.058586					76	38	3	0	0	0	0.023873	2	16665	16665;16712		55.503	30.512	1	499640			3650	4773	2483	2498	4835;4836	4835					-0.018542743852776766
FAAAFHRV	8	Unmodified	_FAAAFHRV_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1721496582031	2	459.750862	917.487171	-0.040172	-1.8469E-05	-3.4749	-0.0015976	-3.5151	-0.0016161	459.75078201339676	28.168	0.69347	28.168	27.64	28.334	0					54	39	2	0	0	0	0.3576	1	3619	3619		0.79363	0.10326	1	18208			3651	5682	2484	2499	4837	4837					0.025126590283321093
FAAASREVL	9	Unmodified	_FAAASREVL_					0	0	0		nc|ENSG00000006015|Q96EN9-3|REX1BD;nc|ENSG00000006015|Q96EN9-2|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;ENST00000597371.1_1_19:18699887-18702987:+|nuORF	nc|ENSG00000006015|Q96EN9-3|REX1BD	nc|ENSG00000006015|Q96EN9-3|REX1BD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7214050292969	2	482.266542	962.51853	-0.83533	-0.00040285	-0.48701	-0.00023487	-1.3223	-0.00063772	482.2663118702319	41.629	0.47699	41.629	41.433	41.91	0					39	17	3	0	0	0	0.16392	1	7766	7766		32.786	11.039	1	166590			3652	363	2485	2500	4838	4838					0.03577187271753246
FAAASREVL	9	Unmodified	_FAAASREVL_					0	0	0		nc|ENSG00000006015|Q96EN9-3|REX1BD;nc|ENSG00000006015|Q96EN9-2|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;ENST00000597371.1_1_19:18699887-18702987:+|nuORF	nc|ENSG00000006015|Q96EN9-3|REX1BD	nc|ENSG00000006015|Q96EN9-3|REX1BD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.26611328125	2	482.266542	962.51853	-0.65985	-0.00031822	-0.41042	-0.00019793	-1.0703	-0.00051615	482.26636551247447	41.552	0.49167	41.642	41.476	41.967	0.089764					44	20	3	0	0	0	0.048027	1	7619	7619		43.772	18.373	1	166800			3653	363	2485	2500	4839	4839					0.03577187271753246
FAADIISVL	9	Unmodified	_FAADIISVL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.77374267578125	2	474.773668	947.532783	0.19201	9.1163E-05	0.065657	3.1172E-05	0.25767	0.00012234	474.77356213513934	88.299	1.4414	88.299	88.004	89.445	0					137	57	4	0	0	0	0.0087214	3	22017	21972;22017;22057		71.134	19.735	1	3328600			3654	4614	2486	2501	4840;4841;4842	4841					0.056918397000458754
FAADIISVL	9	Unmodified	_FAADIISVL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7737121582031	2	474.773668	947.532783	0.061374	2.9139E-05	0.1704	8.0903E-05	0.23178	0.00011004	474.77364993848914	88.237	1.6053	88.268	87.995	89.6	0.030045					149	62	4	0	0	0	0.0012363	4	21813	21769;21813;21856;21900		120.45	53.107	1	3677000			3655	4614	2486	2501	4843;4844;4845;4846	4844					0.056918397000458754
FAAFEEPEL	9	Unmodified	_FAAFEEPEL_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.3121337890625	2	526.75039	1051.48623	0.085809	4.52E-05	-0.65428	-0.00034464	-0.56847	-0.00029944	527.2506325623426	73.699	0.39952	73.699	73.487	73.887	0					21	13	2	0	0	0	0.2418	1	17551	17551		13.906	3.8321	1	80039			3656	3185	2487	2502	4847	4847					-0.03745644921900748
FAALVLCPTEL	11	Unmodified	_FAALVLCPTEL_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8184814453125	2	588.820292	1175.62603	0.20424	0.00012026	-1.8653	-0.0010983	-1.661	-0.00097804	588.8184156607346	72.003	0.45864	72.003	71.858	72.317	0					35	15	3	0	0	0	0.173	1	17027	17027		34.402	3.1334	1	331810			3657	1323	2488	2503	4848	4848					0.045243960909829184
FAALVLCPTEL	11	Unmodified	_FAALVLCPTEL_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.81884765625	2	588.820292	1175.62603	0.37363	0.00022	-0.86033	-0.00050658	-0.4867	-0.00028658	588.8186729276356	71.939	0.395	71.995	71.812	72.207	0.055939					38	13	4	0	0	0	0.173	1	16863	16863		34.402	8.1336	1	359390			3658	1323	2488	2503	4849	4849					0.045243960909829184
FAAYCLWI	8	Unmodified	_FAAYCLWI_					0	0	0			REV__nc|ENSG00000173638|P41440-3|SLC19A1	REV__nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2530212402344	2	493.743857	985.47316	0.54544	0.00026931	-0.3268	-0.00016135	0.21864	0.00010795	493.7435833410567	74.744	0.24934	74.744	74.635	74.884	0					11	8	2	0	0	0	0.3576	1	17892	17892		6.3541	0	1	59596	+		3659	10329	2489	2504	4850	4850					-0.020157545149913858
FACCVFMLLL	10	Unmodified	_FACCVFMLLL_					0	0	0		ENSG00000185372|ENST00000641551|OR2V1	ENSG00000185372|ENST00000641551|OR2V1	ENSG00000185372|ENST00000641551|OR2V1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.8135375976562	2	580.289259	1158.56397	0.65849	0.00038212	-0.33814	-0.00019622	0.32036	0.0001859	580.2886004575538	96.912	0.68575	96.952	96.588	97.274	0.039772					100	32	4	0	0	0	0.31512	1	24456	24456		12.532	1.7076	1	561210			3660	5022	2490	2505	4851	4851					-0.008973698533509378
FADEGSIFYTL	11	Unmodified	_FADEGSIFYTL_					0	0	0		nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.8010864257812	2	631.800611	1261.58667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.648	1	86.675	86.175	87.175	0.027573								0	0	0	0.31149	1	21328	21328		10.8	6.0435	1				3661	1564	2491	2506	4852	4852					-0.03366032658914264
FADGHRRY	8	Unmodified	_FADGHRRY_					0	0	0		nc|ENSG00000102890|Q96BJ8-3|ELMO3;ENSG00000102890|ENST00000393997|ELMO3	nc|ENSG00000102890|Q96BJ8-3|ELMO3	nc|ENSG00000102890|Q96BJ8-3|ELMO3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2524719238281	2	511.251757	1020.48896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.997	1	86.997	86.497	87.497	0								0	0	0	0.3836	1	21594	21594		21.747	1.293	1				3662	1335	2492	2507	4853	4853					-0.020463319537270763
FADGHVLEL	9	Unmodified	_FADGHVLEL_					0	0	0		ENST00000489895.5_1_3:52514938-52524786:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7586364746094	2	500.758549	999.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.804	1	58.875	58.375	59.375	0.070477								0	0	0	0.21527	1	12857	12857		15.847	4.2069	1				3663	414	2493	2508	4854	4854					0.002774810348455503
FADGKVYAL	9	Unmodified	_FADGKVYAL_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2053615-2059683:-|nuORF;ENST00000562988.5_1_16:2052496-2059683:-|nuORF	nc|ENSG00000167962|Q86UK7-2|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2633972167969	2	492.263468	982.512382	0.22391	0.00011022	-0.046132	-2.2709E-05	0.17778	8.7513E-05	492.26337812135716	50.448	0.50029	50.448	50.206	50.707	0					28	17	2	0	0	0	0.11198	1	10437	10437		29.841	12.728	1	114550			3664	4241	2494	2509	4855	4855					0.02042669040235978
FADGKVYAL	9	Unmodified	_FADGKVYAL_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2053615-2059683:-|nuORF;ENST00000562988.5_1_16:2052496-2059683:-|nuORF	nc|ENSG00000167962|Q86UK7-2|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2641296386719	2	492.263468	982.512382	0.31267	0.00015391	-0.077219	-3.8012E-05	0.23545	0.0001159	492.2633264203739	50.317	0.40112	50.39	50.237	50.638	0.07312					27	13	3	0	0	0	0.13341	1	10288	10288		26.268	10.421	1	103430			3665	4241	2494	2509	4856	4856					0.02042669040235978
FADKHIQVL	9	Unmodified	_FADKHIQVL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7623901367188	2	535.803291	1069.59203	-0.4116	-0.00022054	-1.8205	-0.00097546	-2.2321	-0.001196	535.8021330736394	41.324	0.44559	41.324	41.075	41.52	0					33	15	3	0	0	0	0.24533	1	7698	7698		12.241	2.8932	1	117780			3666	3192	2495	2510	4857	4857					0.06001735714221468
FADKHIQVL	9	Unmodified	_FADKHIQVL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.762451171875	2	535.803291	1069.59203	-0.063503	-3.4025E-05	-1.5828	-0.00084809	-1.6463	-0.00088212	535.8023614008246	41.181	0.44597	41.27	41.067	41.513	0.089645					29	16	3	0	0	0	0.19558	1	7534	7534		26.268	12.362	1	100280			3667	3192	2495	2510	4858	4858					0.06001735714221468
FADQEVRSL	9	Unmodified	_FADQEVRSL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.772216796875	2	532.772188	1063.52982	-0.10921	-5.8183E-05	-0.38096	-0.00020297	-0.49017	-0.00026115	532.7721032645436	44.192	0.52392	44.192	43.978	44.502	0					48	17	3	0	0	0	0.0011203	1	8552	8552		121.5	58.931	1	458620			3668	431	2496	2511	4859	4859					0.0005996457523451681
FADQEVRSL	9	Unmodified	_FADQEVRSL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7721557617188	2	532.772188	1063.52982	0.15839	8.4386E-05	-0.54367	-0.00028965	-0.38528	-0.00020527	532.7719960452825	44.09	0.59393	44.179	44.003	44.597	0.088924					48	19	3	0	0	0	0.0016629	2	8391	8391;8437		117.84	64.434	1	379350			3669	431	2496	2511	4860;4861	4860					0.0005996457523451681
FADSVYLDS	9	Unmodified	_FADSVYLDS_					0	0	0			REV__CON__P41361	REV__CON__P41361	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7478332519531	2	508.732197	1015.44984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.052	1	45.139	44.639	45.639	0.08754								0	0	0	0.2428	1	8690	8690		10.824	0	1		+	+	3670	7841	2497	2512	4862	4862					-0.05726521818621677
FADYNLLDLL	10	Unmodified	_FADYNLLDLL_					0	0	0		ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENSG00000084207|ENST00000398606|GSTP1	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.81396484375	2	598.813522	1195.61249	0.037109	2.2222E-05	0.69541	0.00041642	0.73252	0.00043864	598.8138644474534	105.62	0.1839	105.62	105.49	105.68	0					38	20	2	0	0	0	0.051426	1	27222	27222		57.249	13.477	1	603950			3671	946	2498	2513	4863	4863					0.022508615833885415
FADYNLLDLL	10	Unmodified	_FADYNLLDLL_					0	0	0		ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENSG00000084207|ENST00000398606|GSTP1	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8137817382812	2	598.813522	1195.61249	0.032192	1.9277E-05	0.58464	0.00035009	0.61683	0.00036936	598.8138075884166	105.72	0.36803	105.72	105.56	105.93	0					71	38	3	0	0	0	0.051426	1	27257	27257		57.249	13.477	1	529080			3672	946	2498	2513	4864	4864					0.022508615833885415
FADYNLLDLL	10	Unmodified	_FADYNLLDLL_					0	0	0		ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENSG00000084207|ENST00000398606|GSTP1	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.813720703125	2	598.813522	1195.61249	0.26232	0.00015708	0.43612	0.00026116	0.69844	0.00041824	598.8137226077462	105.59	0.37812	105.62	105.48	105.86	0.029732					87	41	3	0	0	0	0.022949	1	27013	27013		65.474	13.844	1	653500			3673	946	2498	2513	4865	4865					0.022508615833885415
FADYNLLDLL	10	Unmodified	_FADYNLLDLL_					0	0	0		ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENSG00000084207|ENST00000398606|GSTP1	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8145141601562	2	598.813522	1195.61249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.68	1	105.71	105.21	106.21	0.029739								0	0	0	0.006209	1	27045	27045		84.522	32.892	1				3674	946	2498	2513	4866	4866					0.022508615833885415
FADYNLLDLL	10	Unmodified	_FADYNLLDLL_					0	0	0		ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENSG00000084207|ENST00000398606|GSTP1	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8134765625	2	598.813522	1195.61249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.8	1	105.83	105.33	106.33	0.029739								0	0	0	0.26775	1	27079	27079		21.59	1.1756	1				3675	946	2498	2513	4867	4867					0.022508615833885415
FADYNLLDLL	10	Unmodified	_FADYNLLDLL_					0	0	0		ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENSG00000084207|ENST00000398606|GSTP1	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	ENST00000494593.1_1_11:67353853-67354045:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	598.813522	1195.61249	0.24158	0.00014466	1.5307	0.0009166	1.7723	0.0010613	598.8143201497952	105.92	0.027443	105.95	105.93	105.95	0.029739	0.11278	0.001129	NaN	57.249	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25789			3676	946	2498	2513							0.022508615833885415
FAEAVDSIF	9	Unmodified	_FAEAVDSIF_					0	0	0		nc|ENSG00000185917|Q9NVD3-4|SETD4;nc|ENSG00000185917|Q9NVD3-3|SETD4;ENSG00000185917|ENST00000332131|SETD4	nc|ENSG00000185917|Q9NVD3-4|SETD4	nc|ENSG00000185917|Q9NVD3-4|SETD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.74615478515625	2	499.745108	997.475663	0.48543	0.00024259	2.0608	0.0010299	2.5462	0.0012725	499.7461264323974	64.822	0.91655	64.891	64.748	65.665	0.068916					52	35	2	0	0	0	0.21398	1	14807	14807		16.942	1.0951	1	155150			3677	5053	2499	2514	4868	4868					-0.02317627576326231
FAEGFVRAL	9	Unmodified	_FAEGFVRAL_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.769775390625	2	505.276909	1008.53927	0.2954	0.00014926	0.40818	0.00020624	0.70358	0.0003555	505.27693853246495	60.969	0.6915	60.969	60.669	61.361	0					28	24	2	0	0	0	0.065576	1	13654	13654		39.95	15.276	1	98119			3678	4709	2500	2515	4869	4869					0.03533777651421133
FAELQILSL	9	Unmodified	_FAELQILSL_					0	0	0			REV__nc|ENSG00000155256|Q5T4F4-5|ZFYVE27	REV__nc|ENSG00000155256|Q5T4F4-5|ZFYVE27	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.7700805664062	2	517.30005	1032.58555	0.38265	0.00019794	-0.40445	-0.00020922	-0.021801	-1.1278E-05	517.2995979094314	94.119	0.52545	94.157	93.997	94.523	0.038086					53	23	3	0	0	0	0.17305	1	23644	23644		31.268	0	1	354000	+		3679	12818	2501	2516	4870	4870					0.07055797762859584
FAFDEIVAL	9	Unmodified	_FAFDEIVAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7713012695312	2	512.771126	1023.5277	0.50092	0.00025686	-0.091665	-4.7003E-05	0.40925	0.00020985	512.7708474829315	93.756	0.97869	93.756	93.548	94.527	0					74	46	3	0	0	0	0.011655	4	23641	23641;23688;23730;23765		64.236	41.088	1	1060900			3680	1094	2502	2517	4871;4872;4873;4874	4871					0.016875358374250027
FAFDEIVAL	9	Unmodified	_FAFDEIVAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7710571289062	2	512.771126	1023.5277	0.42677	0.00021883	-0.21257	-0.000109	0.2142	0.00010983	512.7707785403439	93.801	0.8179	93.838	93.581	94.399	0.037369					55	37	2	0	0	0	0.024893	4	23519	23469;23519;23560;23621		54.774	35.335	1	912220			3681	1094	2502	2517	4875;4876;4877;4878	4876					0.016875358374250027
FAFDEIVAL	9	Unmodified	_FAFDEIVAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.771126	1023.5277	0.47606	0.00024411	-4.4714	-0.0022928	-3.9953	-0.0020487	512.7703827929307	93.52	0.070435	93.558	93.511	93.581	0.037369	-0.09933	-0.0044685	NaN	64.236	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12323			3682	1094	2502	2517							0.016875358374250027
FAFEGIGDEDL	11	Unmodified	_FAFEGIGDEDL_					0	0	0		ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17;ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENSG00000115234|ENST00000233575|SNX17	ENSG00000115234|ENST00000233575|SNX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.775146484375	2	606.774593	1211.53463	1.1106	0.00067391	-0.26535	-0.00016101	0.84529	0.0005129	606.7744234493631	80.64	0.56753	80.64	80.456	81.023	0					52	19	4	0	0	0	0.06744	1	19694	19694		53.404	44.021	1	450860			3683	1889	2503	2518	4879	4879					-0.06267196072644765
FAFEGIGDEDL	11	Unmodified	_FAFEGIGDEDL_					0	0	0		ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17;ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENSG00000115234|ENST00000233575|SNX17	ENSG00000115234|ENST00000233575|SNX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7749633789062	2	606.774593	1211.53463	1.049	0.00063649	-0.35362	-0.00021456	0.69536	0.00042193	606.7743596950983	80.66	0.59027	80.683	80.461	81.051	0.023613					56	20	5	0	0	0	0.027101	2	19495	19495;19557		63.227	46.115	1	441250			3684	1889	2503	2518	4880;4881	4880					-0.06267196072644765
FAFPDEFVF	9	Unmodified	_FAFPDEFVF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000137960|ENST00000370759|GIPC2	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.763427734375	2	559.7633	1117.51205	0.62787	0.00035146	-0.13649	-7.64E-05	0.49138	0.00027506	559.763150099383	98.426	0.88132	98.426	98.219	99.1	0					136	52	4	0	0	0	0.004452	3	25090	25090;25135;25178		92.822	72.369	1	1407800			3685	2208	2504	2519	4882;4883;4884	4882					-0.04200750679615339
FAFPDEFVF	9	Unmodified	_FAFPDEFVF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000137960|ENST00000370759|GIPC2	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7634887695312	2	559.7633	1117.51205	0.68548	0.00038371	-0.17719	-9.9183E-05	0.50829	0.00028452	559.763137055805	98.457	1.0071	98.499	98.218	99.225	0.041939					117	60	4	0	0	0	0.0037915	3	24917	24917;24959;25011		104.8	84.346	1	1195600			3686	2208	2504	2519	4885;4886;4887	4885					-0.04200750679615339
FAFVEFEL	8	Unmodified	_FAFVEFEL_					0	0	0		ENST00000456578.6_1_1:40205841-40207105:+|nuORF;ENST00000485507.5_1_1:40204572-40207704:+|nuORF;ENST00000495526.5_1_1:40205841-40208939:+|nuORF;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE	ENST00000456578.6_1_1:40205841-40207105:+|nuORF	ENST00000456578.6_1_1:40205841-40207105:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2526550292969	2	501.252569	1000.49058	0.30086	0.00015081	0.15161	7.5994E-05	0.45246	0.0002268	501.2526043970728	94.953	0.71962	94.953	94.747	95.467	0					71	29	3	0	0	0	0.12247	1	23995	23995		50.855	26.181	1	442950			3687	939	2505	2520	4888	4888					-0.009641357083296498
FAFVEFEL	8	Unmodified	_FAFVEFEL_					0	0	0		ENST00000456578.6_1_1:40205841-40207105:+|nuORF;ENST00000485507.5_1_1:40204572-40207704:+|nuORF;ENST00000495526.5_1_1:40205841-40208939:+|nuORF;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE	ENST00000456578.6_1_1:40205841-40207105:+|nuORF	ENST00000456578.6_1_1:40205841-40207105:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2530212402344	2	501.252569	1000.49058	0.23896	0.00011978	0.20219	0.00010135	0.44115	0.00022113	501.25260168118433	94.925	0.73428	94.964	94.743	95.477	0.038864					69	30	3	0	0	0	0.032761	3	23822	23822;23865;23914		67.344	42.67	1	360530			3688	939	2505	2520	4889;4890;4891	4889					-0.009641357083296498
FAFWMMEQEWI	11	Unmodified	_FAFWMMEQEWI_					0	0	0		ENST00000215862.8_1_22:31345810-31352754:-|nuORF	ENST00000215862.8_1_22:31345810-31352754:-|nuORF	ENST00000215862.8_1_22:31345810-31352754:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2609558105469	3	506.55792	1516.65193	0.29936	0.00015164	3.6871	0.0018677	3.9865	0.0020194	506.56023192435197	62.464	0.1553	62.537	62.45	62.605	0.072701					6	4	2	0	0	0	0.31092	1	13959	13959		2.2527	1.0379	1	43181			3689	5789	2506	2521	4892	4892					-0.0857307772907916
FAFYCLLCL	9	Unmodified	_FAFYCLLCL_					0	0	0			REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8406372070312	2	546.766474	1091.5184	0.23164	0.00012665	3.1614	0.0017286	3.3931	0.0018552	546.7678621075864	95.238	0.36082	95.277	95.089	95.45	0.038872					21	14	2	0	0	0	0.237	1	23941	23941		9.3474	1.4373	1	117980	+		3690	9343	2507	2522	4893	4893					-0.023702720441178826
FAGSSFGF	8	Unmodified	_FAGSSFGF_					0	0	0			REV__ENSG00000121058|ENST00000240316|COIL	REV__ENSG00000121058|ENST00000240316|COIL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.49188232421875	2	410.187229	818.359904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.735	1	76.774	76.274	77.274	0.03923								0	0	0	0.38822	1	18309	18309		2.8892	0	1		+		3691	8892	2508	2523	4894	4894					-0.05654106636507095
FAHIPMCV	8	Unmodified	_FAHIPMCV_					0	0	0		ENSG00000206422|ENST00000383467|LRRC30	ENSG00000206422|ENST00000383467|LRRC30	ENSG00000206422|ENST00000383467|LRRC30	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.6645202636719	2	459.222234	916.429915	0.25838	0.00011865	2.505	0.0011504	2.7634	0.001269	459.22343667550786	39.102	0.36659	39.102	38.844	39.21	0					16	13	2	0	0	0	0.3576	1	7032	7032		2.8892	0.31174	1	17038			3692	5531	2509	2524	4895	4895					-0.031642675639204754
FAHYFVLC	8	Unmodified	_FAHYFVLC_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;ENST00000545147.5_1_12:31613303-31743898:-|nuORF;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7001647949219	2	500.241481	998.468409	0.078809	3.9424E-05	0.33313	0.00016665	0.41194	0.00020607	500.24151443053717	34.704	0.81083	34.704	34.478	35.289	0					53	29	2	0	0	0	0.35256	1	5652	5652		17.087	2.5049	1	80546			3693	4395	2510	2525	4896	4896					-0.030886386577435587
FAIGFYLLL	9	Unmodified	_FAIGFYLLL_					0	0	0		ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8087158203125	2	528.810054	1055.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.39	1	102.39	101.89	102.89	0								0	0	0	0.24995	1	26272	26272		9.3474	0	1				3694	2535	2511	2526	4897	4897					0.07997593493473687
FAIGFYLLL	9	Unmodified	_FAIGFYLLL_					0	0	0		ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8088989257812	2	528.810054	1055.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.43	1	102.43	101.93	102.93	0								0	0	0	0.2699	1	26286	26286		5.2307	1.2863	1				3695	2535	2511	2526	4898	4898					0.07997593493473687
FAIGFYLLL	9	Unmodified	_FAIGFYLLL_					0	0	0		ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.80859375	2	528.810054	1055.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.58	1	102.58	102.08	103.08	0								0	0	0	0.22377	1	26329	26329		14.582	2.9414	1				3696	2535	2511	2526	4899	4899					0.07997593493473687
FAIGFYLLL	9	Unmodified	_FAIGFYLLL_					0	0	0		ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8088989257812	2	528.810054	1055.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.61	1	102.61	102.11	103.11	0								0	0	0	0.28409	1	26337	26337		2.3027	0	1				3697	2535	2511	2526	4900	4900					0.07997593493473687
FAILIHDVL	9	Unmodified	_FAILIHDVL_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.8107299804688	2	520.810585	1039.60662	0.48902	0.00025469	-0.10522	-5.4799E-05	0.3838	0.00019989	520.810488811722	74.892	0.42876	74.892	74.661	75.09	0					41	15	3	0	0	0	0.0099477	1	17912	17912		67.344	67.344	1	658140			3698	825	2512	2527	4901	4901					0.08839807862364069
FAILIHDVL	9	Unmodified	_FAILIHDVL_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	520.810585	1039.60662	0.34617	0.00018029	0.29356	0.00015289	0.63973	0.00033318	520.8107326125336	74.892	0.44441	74.936	74.641	75.085	0.044037	0.022198	0.00026792	NaN	67.344	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502050			3699	825	2512	2527							0.08839807862364069
FAIPFAITI	9	Unmodified	_FAIPFAITI_					0	0	0		ENSG00000170425|ENST00000304222|ADORA2B	ENSG00000170425|ENST00000304222|ADORA2B	ENSG00000170425|ENST00000304222|ADORA2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7945251464844	2	496.794404	991.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.38	1	101.38	100.88	101.88	0								0	0	0	0.17567	1	25965	25965		21.747	7.165	1				3700	4391	2513	2528	4902	4902					0.07813020459366271
FAIPFAITI	9	Unmodified	_FAIPFAITI_					0	0	0		ENSG00000170425|ENST00000304222|ADORA2B	ENSG00000170425|ENST00000304222|ADORA2B	ENSG00000170425|ENST00000304222|ADORA2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7946472167969	2	496.794404	991.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.26	1	101.31	100.81	101.81	0.042656								0	0	0	0.13043	1	25776	25776		28.487	9.0478	1				3701	4391	2513	2528	4903	4903					0.07813020459366271
FAIPFAITI	9	Unmodified	_FAIPFAITI_					0	0	0		ENSG00000170425|ENST00000304222|ADORA2B	ENSG00000170425|ENST00000304222|ADORA2B	ENSG00000170425|ENST00000304222|ADORA2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7950134277344	2	496.794404	991.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.4	1	101.45	100.95	101.95	0.042656								0	0	0	0.17567	1	25818	25818		21.747	4.8044	1				3702	4391	2513	2528	4904	4904					0.07813020459366271
FAIPLIEKL	9	Unmodified	_FAIPLIEKL_					0	0	0		DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3286743164062	2	522.328611	1042.64267	0.26121	0.00013644	-0.11534	-6.0247E-05	0.14587	7.6191E-05	522.328533747546	78.695	1.6928	78.695	78.073	79.765	0					176	58	5	0	0	0	0.0034419	6	19048	19006;19048;19098;19142;19189;19244		106.94	41.705	1	9657900			3703	269	2514	2529	4905;4906;4907;4908;4909;4910	4906					0.12305265039231017
FAIPLIEKL	9	Unmodified	_FAIPLIEKL_					0	0	0		DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.328125	2	522.328611	1042.64267	0.30073	0.00015708	-0.26336	-0.00013756	0.037372	1.952E-05	522.3284404474949	78.599	2.0588	78.629	78.051	80.11	0.030159					184	72	5	0	0	0	0.0043591	6	18846	18846;18890;18939;18984;19025;19075		96.367	31.132	1	6971800			3704	269	2514	2529	4911;4912;4913;4914;4915;4916	4911					0.12305265039231017
FAIPLIERL	9	Unmodified	_FAIPLIERL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENST00000483593.5_1_10:70666544-70673107:+|nuORF	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.3316650390625	2	536.331685	1070.64882	0.3231	0.00017329	0.10134	5.4354E-05	0.42444	0.00022764	536.3316820935995	78.754	0.71404	78.754	78.54	79.254	0					58	24	3	0	0	0	0.034936	1	19091	19091		47.594	18.513	1	681370			3705	270	2515	2530	4917	4917					0.11631783270763663
FAIPLIERL	9	Unmodified	_FAIPLIERL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENST00000483593.5_1_10:70666544-70673107:+|nuORF	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.3319091796875	2	536.331685	1070.64882	0.56542	0.00030325	-0.099725	-5.3486E-05	0.46569	0.00024977	536.3315214322472	78.769	0.88696	78.799	78.505	79.392	0.030159					66	30	3	0	0	0	0.088609	1	18944	18944		34.932	10.911	1	850530			3706	270	2515	2530	4918	4918					0.11631783270763663
FAIPYAIDVL	10	Unmodified	_FAIPYAIDVL_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3160400390625	2	561.3157	1120.61685	0.45334	0.00025447	0.099433	5.5813E-05	0.55277	0.00031028	561.3156534329984	96.212	0.73904	96.252	95.715	96.455	0.039772					49	37	2	0	0	0	0.21218	1	24269	24269		32.305	21.482	1	203990			3707	4800	2516	2531	4919	4919					0.06136370796934898
FAIPYAIDVL	10	Unmodified	_FAIPYAIDVL_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3159790039062	2	561.3157	1120.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.475	1	96.515	96.015	97.015	0.039772								0	0	0	0.33092	1	24318	24318		10.824	4.4698	1				3708	4800	2516	2531	4920	4920					0.06136370796934898
FAIPYAIDVL	10	Unmodified	_FAIPYAIDVL_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	561.3157	1120.61685	0.38109	0.00021391	0.38313	0.00021506	0.76423	0.00042897	561.3156261945882	96.212	0.34423	96.212	96.015	96.359	0	-0.019877	0.00017071	NaN	32.305	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390800			3709	4800	2516	2531							0.06136370796934898
FAKNAEESKN	10	Unmodified	_FAKNAEESKN_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2816772460938	2	569.280377	1136.5462	-0.14663	-8.3474E-05	2.0363	0.0011592	1.8897	0.0010757	569.2816374345633	32.579	1.0429	32.579	32.362	33.404	0					76	46	3	0	0	0	0.45945	1	5116	5116		2.9952	0.49676	1	53824	+		3710	10812	2517	2532	4921	4921					-0.01660954258682068
FAKYVLNWE	9	Unmodified	_FAKYVLNWE_					0	0	0			REV__ENST00000515224.5_3_5:169010886-169014311:+|nuORF	REV__ENST00000515224.5_3_5:169010886-169014311:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8441772460938	2	585.303124	1168.5917	0.49896	0.00029204	0.32856	0.00019231	0.82753	0.00048435	585.3035474752332	72.365	0.32907	72.421	72.265	72.594	0.055939					17	11	2	0	0	0	0.25875	1	16940	16940		1.8442	0	1	99108	+		3711	12281	2518	2533	4922	4922					0.014143159943841965
FAKYVLNWE	9	Unmodified	_FAKYVLNWE_					0	0	0			REV__ENST00000515224.5_3_5:169010886-169014311:+|nuORF	REV__ENST00000515224.5_3_5:169010886-169014311:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	585.303124	1168.5917	0.1927	0.00011279	0.40654	0.00023795	0.59924	0.00035074	585.8045511289245	72.496	0.23443	72.496	72.348	72.582	0	0.03779	4.9855E-05	NaN	1.8442	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72396	+		3712	12281	2518	2533							0.014143159943841965
FALFMAHHF	9	Unmodified	_FALFMAHHF_					0	0	0		chr20:36609730-36611017|388|36.57|0.0|21.8|+|0|TGIF2-RAB5IF,None|1	chr20:36609730-36611017|388|36.57|0.0|21.8|+|0|TGIF2-RAB5IF,None|1	chr20:36609730-36611017|388|36.57|0.0|21.8|+|0|TGIF2-RAB5IF,None|1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7653198242188	2	560.77348	1119.53241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.396	1	35.475	34.975	35.975	0.078827								0	0	0	0.24995	1	5785	5785		9.3474	1.4373	1				3713	164	2519	2534	4923	4923					-0.02257858500797738
FALFVICPL	9	Unmodified	_FALFVICPL_					0	0	0			REV__ENST00000465541.1_1_13:51524391-51530607:+|nuORF	REV__ENST00000465541.1_1_13:51524391-51530607:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7591247558594	2	511.790807	1021.56706	0.439	0.00022468	-3.728	-0.001908	-3.289	-0.0016833	512.2906074735572	63.789	0.49809	63.86	63.732	64.23	0.071018					26	16	2	0	0	0	0.24749	1	14457	14457		5.2307	0	1	140570	+		3714	11989	2520	2535	4924	4924					0.05713964587289411
FALHIEKLTKV	11	Unmodified	_FALHIEKLTKV_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.9336853027344	3	433.599212	1297.77581	-0.086772	-3.7624E-05	0.44391	0.00019248	0.35713	0.00015485	433.5993913258378	45.289	1.6079	45.377	44.853	46.461	0.08754					157	60	3	0	0	0	0.39824	1	8760	8760		4.7159	1.9807	1	143630	+		3715	8206	2521	2536	4925	4925					0.13883084425060588
FALHIEKLTKV	11	Unmodified	_FALHIEKLTKV_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.9336853027344	3	433.599212	1297.77581	-0.086772	-3.7624E-05	0.44391	0.00019248	0.35713	0.00015485	433.5993913258378	45.289	1.6079	45.377	44.853	46.461	0.08754					157	60	3	0	0	0	0.31072	1	8760	8760		4.7159	1.9807	1	143630	+		3716	8206	2521	2536	4926	4926					0.13883084425060588
FALSEIEVI	9	Unmodified	_FALSEIEVI_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7843322753906	2	510.784233	1019.55391	0.19997	0.00010214	0.22297	0.00011389	0.42294	0.00021603	510.7842204324535	90.115	0.54219	90.115	89.811	90.353	0					32	22	2	0	0	0	0.25979	1	22570	22570		11.64	0.81637	1	503550			3717	5655	2522	2537	4927	4927					0.04491805008922256
FALSEIEVI	9	Unmodified	_FALSEIEVI_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7843017578125	2	510.784233	1019.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.131	1	90.165	89.665	90.665	0.034065								0	0	0	0.15116	1	22386	22386		25.399	6.1423	1				3718	5655	2522	2537	4928	4928					0.04491805008922256
FAMIDSEEWF	10	Unmodified	_FAMIDSEEWF_					0	0	0			REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant	REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.51812744140625	3	425.518118	1273.53253	0.58116	0.00024729	-0.46616	-0.00019836	0.115	4.8935E-05	425.51783372725794	55.79	0.6629	55.79	55.579	56.242	0					45	23	3	0	0	0	0.36288	1	12059	12059		9.544	1.0997	1	373200	+		3719	12978	2523	2538	4929	4929					-0.09329948082131523
FAMIDSEEWF	10	Unmodified	_FAMIDSEEWF_					0	0	0			REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant	REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.5178527832031	3	425.518118	1273.53253	0.17675	7.5212E-05	-0.12368	-5.2627E-05	0.053078	2.2586E-05	425.51801898544414	55.727	0.49628	55.792	55.595	56.092	0.065128					49	17	4	0	0	0	0.36288	2	11911	11911;11960		9.544	0.79219	1	433430	+		3720	12978	2523	2538	4930;4931	4930					-0.09329948082131523
FAMIDSEEWF	10	Unmodified	_FAMIDSEEWF_					0	0	0			REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant	REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	425.518118	1273.53253	0.58116	0.00024729	-0.46616	-0.00019836	0.115	4.8935E-05	425.51783372725794	55.79	0.6629	55.79	55.579	56.242	0	-0.001184	-0.00019739	NaN	9.544	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373200	+		3721	12978	2523	2538							-0.09329948082131523
FAMIDSEEWF	10	Unmodified	_FAMIDSEEWF_					0	0	0			REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant	REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	425.518118	1273.53253	0.17675	7.5212E-05	-0.12368	-5.2627E-05	0.053078	2.2586E-05	425.51801898544414	55.727	0.49628	55.792	55.595	56.092	0.065128	0.001184	0.0002398	NaN	9.544	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433430	+		3722	12978	2523	2538							-0.09329948082131523
FAMTSFVIG	9	Unmodified	_FAMTSFVIG_					0	0	0		AUTS2|p.V97_T98insIGNASPH|1|0.14|ENSG00000158321|chr7:69599943-69599944|-/GATAGGAAATGCCTCCCCCCA|inframe_insertion	AUTS2|p.V97_T98insIGNASPH|1|0.14|ENSG00000158321|chr7:69599943-69599944|-/GATAGGAAATGCCTCCCCCCA|inframe_insertion	AUTS2|p.V97_T98insIGNASPH|1|0.14|ENSG00000158321|chr7:69599943-69599944|-/GATAGGAAATGCCTCCCCCCA|inframe_insertion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.74835205078125	2	486.746596	971.478639	0.35054	0.00017062	3.7603	0.0018303	4.1109	0.0020009	486.74824693390605	67.949	0.19941	68.012	67.904	68.103	0.063507					12	7	2	0	0	0	0.31496	1	15645	15645		4.756	0	1	70019			3723	78	2524	2539	4932	4932					-0.008240757231646967
FANEEGEAQKF	11	Unmodified	_FANEEGEAQKF_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.2908935546875	2	635.290942	1268.56733	0.17694	0.00011241	-0.12004	-7.6261E-05	0.056903	3.615E-05	635.2907036145377	38.545	0.31493	38.545	38.426	38.741	0					17	10	2	0	0	0	0.39356	1	6859	6859		5.7834	4.3015	1	54598			3724	4285	2525	2540	4933	4933					-0.05620988949817729
FANEEGEAQKF	11	Unmodified	_FANEEGEAQKF_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.2904663085938	2	635.290942	1268.56733	0.32936	0.00020924	-0.17315	-0.00011	0.15621	9.924E-05	635.2907543227798	38.484	0.28275	38.571	38.435	38.717	0.08688					16	9	2	0	0	0	0.41422	1	6695	6695		1.0715	0.61312	1	50850			3725	4285	2525	2540	4934	4934					-0.05620988949817729
FANVEEHSF	9	Unmodified	_FANVEEHSF_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2427978515625	2	540.243264	1078.47197	-0.10115	-5.4645E-05	0.15321	8.2771E-05	0.052063	2.8127E-05	540.2430365072112	44.068	0.61464	44.068	43.887	44.502	0					44	20	3	0	0	0	0.0047429	2	8514	8514;8564		83.429	37.689	1	232660			3726	335	2526	2541	4935;4936	4935					-0.06412297350175322
FANVEEHSF	9	Unmodified	_FANVEEHSF_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2433471679688	2	540.243264	1078.47197	0.14066	7.5991E-05	0.21952	0.0001186	0.36018	0.00019459	540.2432071571702	43.984	0.6104	44.073	43.901	44.512	0.088921					38	20	3	0	0	0	0.0047429	2	8362	8362;8411		83.429	33.874	1	243970			3727	335	2526	2541	4937;4938	4937					-0.06412297350175322
FAPAEYGPLF	10	Unmodified	_FAPAEYGPLF_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2781372070312	2	556.276575	1110.5386	0.77867	0.00043316	1.9011	0.0010575	2.6797	0.0014907	556.2778308985393	98.879	0.81042	98.921	98.68	99.491	0.041939					146	53	5	0	0	0	0.40987	1	25007	25007		10.824	1.4408	1	1464800	+		3728	9796	2527	2542	4939	4939					-0.012250617883182713
FAPDFFSLF	9	Unmodified	_FAPDFFSLF_					0	0	0			REV__ENSG00000119737|ENST00000394705|GPR75	REV__ENSG00000119737|ENST00000394705|GPR75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7799682617188	2	545.765843	1089.51713	0.39413	0.0002151	-0.49358	-0.00026938	-0.099449	-5.4276E-05	545.7654828516763	55.442	1.7384	55.507	54.887	56.625	0.065128					123	66	3	0	0	0	0.24365	1	11988	11988		13.508	2.684	1	610800	+		3729	8860	2528	2543	4940	4940					-0.02404446817013195
FAPFFAGF	8	Unmodified	_FAPFFAGF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.1692810058594	2	452.223614	902.432676	0.30766	0.00013913	2.9636	0.0013402	3.2713	0.0014793	452.2244187808278	49.159	0.3653	49.159	48.917	49.283	0					19	12	3	0	0	0	0.3576	1	10054	10054		6.3541	0.14832	1	35563			3730	5226	2529	2544	4941	4941					-0.022443528430926563
FAPPVQESF	9	Unmodified	_FAPPVQESF_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2513427734375	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.021	1	87.049	86.549	87.549	0.027573								0	0	0	0.15116	1	21443	21443		25.399	0.72543	1				3731	914	2530	2545	4942	4942					-0.01777921339430577
FAQEESYFG	9	Unmodified	_FAQEESYFG_					0	0	0			REV__ENST00000358149.7_2_5:176492462-176492681:+|nuORF	REV__ENST00000358149.7_2_5:176492462-176492681:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2333374023438	2	539.229822	1076.44509	0.30861	0.00016641	3.651	0.0019687	3.9596	0.0021351	539.2321121263656	86.966	0.44752	86.994	86.808	87.256	0.027573					35	19	3	0	0	0	0.092418	2	21418	21418;21450		34.102	15.967	1	401670	+		3732	11517	2531	2546	4943;4944	4943					-0.09007405961369841
FAQHQARL	8	Unmodified	_FAQHQARL_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.764892578125	2	485.764501	969.514448	0.22745	0.00011049	0.93589	0.00045462	1.1633	0.00056511	485.76478312807177	88.297	0.59395	88.297	88.085	88.679	0					59	23	4	0	0	0	0.49441	1	22052	22052		13.508	0	1	679670	+		3733	12929	2532	2547	4945	4945					0.02847142568691652
FAQHQARL	8	Unmodified	_FAQHQARL_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7649230957031	2	485.764501	969.514448	0.1186	5.7613E-05	0.77739	0.00037763	0.89599	0.00043524	485.76477739876213	88.263	0.84795	88.293	88.023	88.871	0.030037					63	33	3	0	0	0	0.49441	1	21884	21884		13.508	0	1	616900	+		3734	12929	2532	2547	4946	4946					0.02847142568691652
FAQHQARL	8	Unmodified	_FAQHQARL_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	485.764501	969.514448	0.22745	0.00011049	0.93589	0.00045462	1.1633	0.00056511	485.76478312807177	88.297	0.59395	88.297	88.085	88.679	0	0.0018758	9.8006E-05	NaN	13.508	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	679670	+		3735	12929	2532	2547							0.02847142568691652
FAQYAVTFDF	10	Unmodified	_FAQYAVTFDF_					0	0	0		FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.26953125	2	604.784764	1207.55498	0.62074	0.00037542	-0.0073027	-4.4166E-06	0.61344	0.000371	605.2865175186843	67.801	0.48753	67.801	67.699	68.186	0					32	18	2	0	0	0	0.42335	1	15730	15730		9.3831	2.66	1	144900			3736	3667	2533	2548	4947	4947					-0.040499806221987456
FARPQPLW	8	Unmodified	_FARPQPLW_					0	0	0		ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7776794433594	2	507.779619	1013.54469	0.61901	0.00031432	-3.7353	-0.0018967	-3.1162	-0.0015824	507.77770876033964	85.108	0.50387	85.131	84.895	85.399	0.023125					30	19	2	0	0	0	0.45077	1	20879	20879		19.439	2.3524	1	116450			3737	6178	2534	2549	4948	4948					0.03845501233899995
FARQLWLL	8	Unmodified	_FARQLWLL_					0	0	0		ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.76318359375	2	523.810919	1045.60729	0.27821	0.00014573	-1.6328	-0.00085528	-1.3546	-0.00070955	523.8099621930584	95.139	0.43198	95.139	94.896	95.328	0					26	19	2	0	0	0	0.3576	1	24112	24112		5.7604	0	1	55902			3738	1436	2535	2550	4949	4949					0.08630647302084071
FARQLWLL	8	Unmodified	_FARQLWLL_					0	0	0		ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7642822265625	2	523.810919	1045.60729	0.12878	6.7454E-05	-0.90432	-0.00047369	-0.77555	-0.00040624	523.8102983173682	95.096	0.39716	95.135	94.935	95.332	0.038864					24	16	2	0	0	0	0.35759	1	23928	23928		9.3474	0	1	62143			3739	1436	2535	2550	4950	4950					0.08630647302084071
FASCMGDS	8	Unmodified	_FASCMGDS_					0	0	0		ENST00000459929.5_1_1:185275751-185278625:-|nuORF;IVNS1ABP|p.S246Rfs*23|1|0.16|ENSG00000116679|chr1:185305563-185305564|-/CT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000459929.5_1_1:185275751-185278625:-|nuORF	ENST00000459929.5_1_1:185275751-185278625:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.8570861816406	2	409.146389	816.278225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.171	1	68.171	67.671	68.671	0								0	0	0	0.38822	1	15851	15851		0.79363	0	1				3740	1966	2536	2551	4951	4951					-0.13726293382285348
FASLPQVER	9	Unmodified	_FASLPQVER_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.78515625	2	523.785099	1045.55564	0.32868	0.00017216	0.02725	1.4273E-05	0.35593	0.00018643	523.7850182392585	47.028	0.55864	47.028	46.813	47.372	0					41	19	3	0	0	0	0.081383	1	9427	9427		36.506	11.107	1	180290			3741	768	2537	2552	4952	4952					0.03468858817495857
FASLPQVER	9	Unmodified	_FASLPQVER_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7852783203125	2	523.785099	1045.55564	0.21256	0.00011134	0.2784	0.00014582	0.49096	0.00025716	523.7849987878857	46.958	0.50623	47.041	46.762	47.269	0.083096					31	19	2	0	0	0	0.065576	1	9267	9267		39.95	15.929	1	187830			3742	768	2537	2552	4953	4953					0.03468858817495857
FASLYEKST	9	Unmodified	_FASLYEKST_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2620239257812	2	523.263665	1044.51278	0.29268	0.00015315	-3.931	-0.002057	-3.6383	-0.0019038	523.2619089206885	46.972	0.34964	46.972	46.766	47.116	0					21	12	2	0	0	0	0.17247	1	9407	9407		21.747	0.87544	1	115030	+		3743	8253	2538	2553	4954	4954					-0.0076995603058094275
FASSFKIVL	9	Unmodified	_FASSFKIVL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2977600097656	2	506.29731	1010.58007	0.3169	0.00016045	0.53221	0.00026946	0.84911	0.0004299	506.2977388426521	67.842	1.0285	67.842	67.348	68.377	0					69	38	3	0	0	0	0.0045417	3	15722	15722;15770;15820		89.401	57.095	1	579850			3744	5007	2539	2554	4955;4956;4957	4955					0.07520118971035572
FASSFKIVL	9	Unmodified	_FASSFKIVL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2975769042969	2	506.29731	1010.58007	0.55301	0.00027999	0.5822	0.00029477	1.1352	0.00057475	506.2977355453792	67.703	1.1615	67.767	67.318	68.48	0.063507					77	41	3	0	0	0	0.012041	3	15554	15554;15606;15688		63.961	27.833	1	632560			3745	5007	2539	2554	4958;4959;4960	4958					0.07520118971035572
FASVLWEFF	9	Unmodified	_FASVLWEFF_					0	0	0		nc|ENSG00000151240|Q9Y2E4-2|DIP2C	nc|ENSG00000151240|Q9Y2E4-2|DIP2C	nc|ENSG00000151240|Q9Y2E4-2|DIP2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.2863159179688	2	573.286943	1144.55933	0.28811	0.00016517	-0.61259	-0.00035119	-0.32448	-0.00018602	573.2864749080967	77.293	1.704	77.293	76.947	78.651	0					124	65	3	0	0	0	0.25979	1	18735	18735		11.64	2.8949	1	2341300			3746	7528	2540	2555	4961	4961					-0.007164714086229651
FATFVFNVF	9	Unmodified	_FATFVFNVF_					0	0	0		NCS1|p.D73H|1|0.09|ENSG00000107130|chr9:130217959-130217959|G/C|missense_variant;nc|ENSG00000107130|P62166-2|NCS1;ENSG00000107130|ENST00000372398|NCS1	NCS1|p.D73H|1|0.09|ENSG00000107130|chr9:130217959-130217959|G/C|missense_variant	NCS1|p.D73H|1|0.09|ENSG00000107130|chr9:130217959-130217959|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2816772460938	2	546.28166	1090.54877	0.36626	0.00020008	-4.3122	-0.0023557	-3.946	-0.0021556	546.779828244528	56.012	0.7084	56.012	55.749	56.458	0					54	25	3	0	0	0	0.14718	1	12193	12193		24.674	0	1	410530			3747	1544	2541	2556	4962	4962					0.00711545936951552
FATHFLELC	9	Unmodified	_FATHFLELC_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7537231445312	2	540.762778	1079.511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.545	1	46.545	46.045	47.045	0								0	0	0	0.17567	1	9272	9272		21.747	2.3076	1				3748	620	2542	2557	4963	4963					-0.025572883201675722
FATLVDVVV	9	Unmodified	_FATLVDVVV_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.781494140625	2	481.781493	961.548434	0.50243	0.00024206	-0.010461	-5.0397E-06	0.49197	0.00023702	481.78135988046455	84.438	0.3947	84.438	84.309	84.704	0					46	29	2	0	0	0	0.021119	3	20787	20787;20824;20873		57.471	34.323	1	993560			3749	1049	2543	2558	4964;4965;4966	4964					0.06612126217089553
FATLVDVVV	9	Unmodified	_FATLVDVVV_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7812805175781	2	481.781493	961.548434	0.18783	9.0492E-05	0.13402	6.4568E-05	0.32185	0.00015506	481.78146929012786	84.378	0.55627	84.401	84.169	84.726	0.023125					53	40	2	0	0	0	0.024893	3	20608	20608;20645;20687		54.774	31.625	1	1842000			3750	1049	2543	2558	4967;4968;4969	4967					0.06612126217089553
FATLVDVVV	9	Unmodified	_FATLVDVVV_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7815246582031	2	481.781493	961.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.707	1	84.73	84.23	85.23	0.023125								0	0	0	0.17567	1	20735	20735		21.747	10.106	1				3751	1049	2543	2558	4970	4970					0.06612126217089553
FATSLSIVL	9	Unmodified	_FATSLSIVL_					0	0	0		nc|ENSG00000102100|P78381-5|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000102100|P78381-5|SLC35A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.78155517578125	2	475.781493	949.548434	0.020005	9.5181E-06	0.25332	0.00012053	0.27333	0.00013005	475.78148885216655	83.875	0.47401	83.897	83.668	84.142	0.021744					22	16	2	0	0	0	0.26684	1	20501	20501		10.824	0	1	148600			3752	1295	2544	2559	4971	4971					0.07164126217105604
FATSLSIVL	9	Unmodified	_FATSLSIVL_					0	0	0		nc|ENSG00000102100|P78381-5|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000102100|P78381-5|SLC35A2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	475.781493	949.548434	0.36704	0.00017463	0.00084487	4.0197E-07	0.36789	0.00017503	475.78117279524275	83.878	0.36464	83.878	83.686	84.051	0	-0.0092726	-0.00017378	NaN	10.824	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54223			3753	1295	2544	2559							0.07164126217105604
FAVHPEPEA	9	Unmodified	_FAVHPEPEA_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.74310302734375	2	498.742899	995.471246	0.28553	0.00014241	-0.43872	-0.00021881	-0.15319	-7.6402E-05	498.7427388480674	38.769	0.56711	38.769	38.567	39.134	0					37	21	3	0	0	0	0.14091	1	6931	6931		25.399	16.016	1	92119			3754	1731	2545	2560	4972	4972					-0.026670919992398012
FAVHPEPEA	9	Unmodified	_FAVHPEPEA_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.742899	995.471246	0.36159	0.00018034	-0.42726	-0.00021309	-0.065671	-3.2753E-05	498.7427326483308	38.711	0.53427	38.797	38.595	39.13	0.08688	0.014034	7.3268E-06	NaN	25.399	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64425			3755	1731	2545	2560							-0.026670919992398012
FAVLEDHTL	9	Unmodified	_FAVLEDHTL_					0	0	0		CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant;CCDC50|p.A43Hfs*25|1|0.22|ENSG00000152492|chr3:191358011-191358011|G/-|frameshift_variant;nc|ENSG00000152492|Q8IVM0|CCDC50;ENSG00000152492|ENST00000392455|CCDC50	CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant	CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7716064453125	2	522.771657	1043.52876	0.29606	0.00015477	-0.26635	-0.00013924	0.02972	1.5537E-05	522.7714315733118	57.046	1.4399	57.046	56.777	58.217	0					132	51	5	0	0	0	0.0032694	2	12466	12413;12466		108	57.142	1	3021300			3756	108	2546	2561	4973;4974	4974					0.008737502063240754
FAVPLSSAAF	10	Unmodified	_FAVPLSSAAF_					0	0	0			REV__nc|ENSG00000205683|Q92784-3|DPF3	REV__nc|ENSG00000205683|Q92784-3|DPF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.27203369140625	2	505.271293	1008.52803	0.24648	0.00012454	0.071813	3.6285E-05	0.31829	0.00016082	505.27127741072866	82.53	0.66096	82.552	82.27	82.931	0.021751					70	23	4	0	0	0	0.37232	1	20183	20183		14.838	0	1	1482300	+		3757	12875	2547	2562	4975	4975					0.024109555572863428
FAVTLETVL	9	Unmodified	_FAVTLETVL_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.786865234375	2	496.786776	991.558998	0.71836	0.00035687	-0.33911	-0.00016847	0.37925	0.00018841	496.7863171947034	85.091	1.4765	85.091	84.786	86.263	0					87	59	3	0	0	0	0.0025191	2	21039	20988;21039		112.59	38.17	1	685230			3758	2686	2548	2563	4976;4977	4977					0.062881088715244
FAVTLETVL	9	Unmodified	_FAVTLETVL_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7868347167969	2	496.786776	991.558998	0.73859	0.00036692	-0.24841	-0.00012341	0.49017	0.00024351	496.7864857684634	85.112	0.73958	85.135	84.83	85.569	0.023125					67	30	3	0	0	0	0.0025191	2	20872	20829;20872		112.59	38.17	1	871520			3759	2686	2548	2563	4978;4979	4979					0.062881088715244
FAVVNGHRF	9	Unmodified	_FAVVNGHRF_					0	0	0			REV__ENSG00000170925|ENST00000302917|TEX13B	REV__ENSG00000170925|ENST00000302917|TEX13B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.76318359375	2	523.780151	1045.54575	0.31965	0.00016743	0.48256	0.00025276	0.80221	0.00042018	523.7802583747882	94.799	0.86297	94.799	94.511	95.374	0					57	36	3	0	0	0	0.28587	1	24112	24112		8.5933	1.8701	1	178230	+		3760	10232	2549	2564	4980	4980					0.024797156027943856
FAWCFLLI	8	Unmodified	_FAWCFLLI_					0	0	0			REV__ENSG00000171435|ENST00000339824|KSR2	REV__ENSG00000171435|ENST00000339824|KSR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7707824707031	2	506.769874	1011.5252	0.42764	0.00021672	2.6035	0.0013194	3.0311	0.0015361	506.7711954834865	85.916	0.65846	85.941	85.599	86.258	0.025169					31	23	2	0	0	0	0.51202	1	21144	21144		11.114	0	1	142470	+		3761	10254	2550	2565	4981	4981					0.019894088987712166
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2561645507812	2	546.25584	1090.49713	0.54692	0.00029876	0.21045	0.00011496	0.75737	0.00041372	546.2560545523423	55.067	2.5983	55.067	54.562	57.16	0					146	97	2	0	0	0	0.0042703	1	11830	11830		99.755	70.674	1	10308000			3762	5482	2551	2566	4982	4982					-0.04450242547613925
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2564697265625	2	546.25584	1090.49713	0.53462	0.00029204	0.13454	7.3495E-05	0.66916	0.00036553	546.2560005904363	55.038	2.6144	55.104	54.563	57.178	0.065128					169	103	2	0	0	0	0.00087611	3	11725	11675;11725;12043		125.53	77.78	1	7973800			3763	5482	2551	2566	4983;4984;4985	4984					-0.04450242547613925
FAYIKYDNEL	10	Unmodified	_FAYIKYDNEL_					0	0	0		tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.3165893554688	2	638.316428	1274.6183	0.57274	0.00036559	-0.23656	-0.000151	0.33618	0.00021459	638.3162184338713	65.476	1.2561	65.476	65.224	66.48	0					123	45	5	0	0	0	0.20801	4	15049	15005;15049;15098;15180		32.786	8.9959	1	1691700			3764	13521	2552	2567	4986;4987;4988;4989	4987					-0.008020399049428306
FAYIKYDNEL	10	Unmodified	_FAYIKYDNEL_					0	0	0		tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.316650390625	2	638.316428	1274.6183	0.43501	0.00027768	-0.053589	-3.4207E-05	0.38142	0.00024347	638.3162880413668	65.468	1.3183	65.535	65.186	66.504	0.066872					133	50	4	0	0	0	0.20801	4	14888	14844;14888;14935;14987		32.786	7.4878	1	1956500			3765	13521	2552	2567	4990;4991;4992;4993	4991					-0.008020399049428306
FAYTQLSDF	9	Unmodified	_FAYTQLSDF_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7991943359375	2	546.25584	1090.49713	0.45019	0.00024592	0.27627	0.00015091	0.72645	0.00039683	546.2560437532615	53.513	1.2599	53.579	53.206	54.466	0.06543					96	54	2	0	0	0	0.24635	1	11450	11450		6.7232	1.4925	1	1626000	+		3766	8161	2553	2568	4994	4994					-0.044502425476366625
FAYYRCDAP	9	Unmodified	_FAYYRCDAP_					0	0	0			REV__ENSG00000130005|ENST00000252288|GAMT	REV__ENSG00000130005|ENST00000252288|GAMT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7529296875	2	553.242209	1104.46987	0.67319	0.00037244	3.4041	0.0018833	4.0773	0.0022557	553.2439525115423	55.067	0.46797	55.067	54.85	55.318	0					29	17	2	0	0	0	0.2229	1	11862	11862		19.257	3.4098	1	274780	+		3767	9043	2554	2569	4995	4995					-0.07819049359659402
FCCFTGIRHP	10	Unmodified	_FCCFTGIRHP_					0	0	0			REV__ENST00000321792.5_1_1:89449705-89458421:-|nuORF	REV__ENST00000321792.5_1_1:89449705-89458421:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.7967529296875	2	590.773154	1179.53175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.552	1	16.552	16.052	17.052	0								0	0	0	0.33984	1	750	750		0.40072	0	1		+		3768	11398	2555	2570	4996	4996					-0.050830212121354634
FCDWQQAWER	10	Unmodified	_FCDWQQAWER_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-10|SFI1	nc|ENSG00000198089|A8K8P3-10|SFI1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.8638000488281	3	456.864511	1367.5717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.43	1	115.44	114.94	115.94	0.013092								0	0	0	0.34005	1	29349	29349		0.15932	0	1				3769	5346	2556	2571	4997	4997					-0.09737803007919865
FCEWMIQQI	9	Unmodified	_FCEWMIQQI_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2470703125	2	599.275195	1196.53584	0.54063	0.00032398	-0.19247	-0.00011534	0.34816	0.00020864	599.2748541037987	70.473	0.56731	70.473	70.219	70.786	0					38	20	3	0	0	0	0.20194	1	16527	16527		24.021	2.4836	1	257150			3770	5459	2557	2572	4998	4998					-0.05456976509094602
FCEWMIQQI	9	Unmodified	_FCEWMIQQI_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2750244140625	2	599.275195	1196.53584	0.51645	0.00030949	-0.66507	-0.00039856	-0.14862	-8.9064E-05	599.2748004287389	70.392	0.52056	70.452	70.257	70.777	0.060555					43	20	3	0	0	0	0.074645	1	16373	16373		37.974	3.5723	1	187970			3771	5459	2557	2572	4999	4999					-0.05456976509094602
FCFFGFHL	8	Unmodified	_FCFFGFHL_					0	0	0			REV__ENST00000436679.2_1_11:73840908-73844654:-|nuORF	REV__ENST00000436679.2_1_11:73840908-73844654:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2364196777344	2	509.236199	1016.45784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.419	1	95.419	94.919	95.919	0								0	0	0	0.38822	1	24153	24153		0.79363	0	1		+		3772	11866	2558	2573	5000	5000					-0.04972621312174397
FCFGPACHLL	10	Unmodified	_FCFGPACHLL_					0	0	0			REV__nc|ENSG00000105664|P49747-2|COMP	REV__nc|ENSG00000105664|P49747-2|COMP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.829345703125	2	554.259348	1106.50414	0.46457	0.00025749	0.91827	0.00050896	1.3828	0.00076645	554.2586079636983	76.988	0.22069	76.988	76.838	77.059	0					10	7	2	0	0	0	0.31667	1	18518	18518		7.9102	1.5561	1	51170	+		3773	8551	2559	2574	5001	5001					-0.04484924472399143
FCFLSPSAAAA	11	Unmodified	_FCFLSPSAAAA_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2444458007812	2	542.760235	1083.50592	0.2036	0.00011051	-4.2267	-0.0022941	-4.0231	-0.0021836	542.758181965386	35.171	0.28453	35.25	35.122	35.407	0.078827					15	11	2	0	0	0	0.31094	1	5694	5694		1.3295	0.5359	1	21661			3774	2204	2560	2575	5002	5002					-0.03249592182805827
FCGGMYSCQQS	11	Unmodified	_FCGGMYSCQQS_					0	0	0			REV__nc|ENSG00000185739|Q86TD4-3|SRL	REV__nc|ENSG00000185739|Q86TD4-3|SRL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1584777832031	3	404.149043	1209.4253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.373	1	55.438	54.938	55.938	0.065128								0	0	0	0.33867	1	11814	11814		1.2148	0.25256	1		+		3775	10680	2561	2576	5003	5003					-0.17103564559647566
FCMLRVKE	8	Unmodified	_FCMLRVKE_					0	0	0		RASD2|p.R220L|1|0.27|ENSG00000100302|chr22:35551890-35551890|G/T|missense_variant	RASD2|p.R220L|1|0.27|ENSG00000100302|chr22:35551890-35551890|G/T|missense_variant	RASD2|p.R220L|1|0.27|ENSG00000100302|chr22:35551890-35551890|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.267578125	2	513.267173	1024.51979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.34	1	105.34	104.84	105.84	0								0	0	0	0.38822	1	27133	27133		0.79363	0	1				3776	7681	2562	2577	5004	5004					0.00851362044659254
FCNALLKIPK	10	Unmodified	_FCNALLKIPK_					0	0	0			REV__AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	REV__AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8412475585938	2	573.83882	1145.66309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.209	1	12.271	11.771	12.771	0.061733								0	0	0	0.33984	1	35	35		0.40072	0.40072	1		+		3777	7700	2563	2578	5005	5005					0.09608112427372362
FCPAPPSR	8	Unmodified	_FCPAPPSR_					0	0	0			REV__ENST00000593829.5_1_19:18426856-18433916:-|nuORF	REV__ENST00000593829.5_1_19:18426856-18433916:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.71600341796875	2	437.71563	873.416708	0.6078	0.00026604	-1.2057	-0.00052775	-0.59789	-0.0002617	437.71490364431907	99.776	0.6219	99.776	99.433	100.05	0					59	33	2	0	0	0	0.53771	1	25534	25534		2.8892	0.58649	1	675940	+		3778	12598	2564	2579	5006	5006					-0.025063823516575212
FCPAWINL	8	Unmodified	_FCPAWINL_					0	0	0		ENST00000278505.4_1_11:94863553-94863637:+|nuORF	ENST00000278505.4_1_11:94863553-94863637:+|nuORF	ENST00000278505.4_1_11:94863553-94863637:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2425231933594	2	482.241481	962.468409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.357	1	70.357	69.857	70.857	0								0	0	0	0.36535	1	16515	16515		34.187	1.8818	1				3779	5926	2565	2580	5007	5007					-0.014326386577636185
FCPAWINL	8	Unmodified	_FCPAWINL_					0	0	0		ENST00000278505.4_1_11:94863553-94863637:+|nuORF	ENST00000278505.4_1_11:94863553-94863637:+|nuORF	ENST00000278505.4_1_11:94863553-94863637:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.24200439453125	2	482.241481	962.468409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.685	1	69.745	69.245	70.245	0.060562								0	0	0	0.36535	1	16158	16158		34.187	1.8818	1				3780	5926	2565	2580	5008	5008					-0.014326386577636185
FCPHPHPA	8	Unmodified	_FCPHPHPA_					0	0	0			REV__ENST00000602410.1_1_2:233387240-233387915:+|nuORF	REV__ENST00000602410.1_1_2:233387240-233387915:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2095031738281	2	453.207973	904.401392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.76	1	100.76	100.26	101.26	0								0	0	0	0.38822	1	25778	25778		0.79363	0.10326	1		+		3781	12627	2566	2581	5009	5009					-0.05463249148851901
FCPHPHPA	8	Unmodified	_FCPHPHPA_					0	0	0			REV__ENST00000602410.1_1_2:233387240-233387915:+|nuORF	REV__ENST00000602410.1_1_2:233387240-233387915:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.20947265625	2	453.207973	904.401392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.447	1	99.49	98.99	99.99	0.042839								0	0	0	0.38822	1	25221	25221		0.79363	0.10326	1		+		3782	12627	2566	2581	5010	5010					-0.05463249148851901
FCPSWSIFW	9	Unmodified	_FCPSWSIFW_					0	0	0			REV__nc|ENSG00000128383|P31941-2|APOBEC3A	REV__nc|ENSG00000128383|P31941-2|APOBEC3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7666015625	2	586.76532	1171.51609	0.57503	0.00033741	1.5881	0.00093186	2.1632	0.0012693	586.7661914989745	101.1	0.47647	101.1	100.87	101.35	0					53	25	3	0	0	0	0.11022	1	25888	25888		30.225	3.3412	1	111950	+		3783	9015	2567	2582	5011	5011					-0.06280984457566774
FCPSWSIFW	9	Unmodified	_FCPSWSIFW_					0	0	0			REV__nc|ENSG00000128383|P31941-2|APOBEC3A	REV__nc|ENSG00000128383|P31941-2|APOBEC3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2908325195312	2	586.76532	1171.51609	0.57503	0.00033741	1.5881	0.00093186	2.1632	0.0012693	586.7661914989745	101.1	0.47647	101.1	100.87	101.35	0					53	25	3	0	0	0	0.22289	1	25842	25842		18.135	2.2878	1	111950	+		3784	9015	2567	2582	5012	5012					-0.06280984457566774
FCPWPGLLR	9	Unmodified	_FCPWPGLLR_					0	0	0		ENST00000483071.1_1_3:50327152-50327194:-|nuORF;ENST00000417626.6_1_3:50327152-50327360:-|nuORF	ENST00000483071.1_1_3:50327152-50327194:-|nuORF	ENST00000483071.1_1_3:50327152-50327194:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.8021240234375	2	544.78913	1087.56371	-0.086573	-4.7164E-05	-1.4674	-0.00079944	-1.554	-0.00084661	544.788266988406	28.839	0.2195	28.917	28.789	29.008	0.078287					19	15	2	0	0	0	0.33356	1	3824	3824		2.3027	1.5091	1	12721			3785	6433	2568	2583	5013	5013					0.023427145333016597
FCQAHALY	8	Unmodified	_FCQAHALY_					0	0	0			REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.72088623046875	2	476.720913	951.427273	-0.049116	-2.3415E-05	-0.15538	-7.4075E-05	-0.2045	-9.7489E-05	476.7207799892679	87.528	1.0711	87.558	87.096	88.167	0.030037					62	40	2	0	0	0	0.54081	1	21624	21624		0.79363	0	1	147520	+		3786	12997	2569	2584	5014	5014					-0.050383996972414025
FCRGCELCPFP	11	Unmodified	_FCRGCELCPFP_					0	0	0			REV__ENSG00000156853|ENST00000287461|ZNF689	REV__ENSG00000156853|ENST00000287461|ZNF689	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.85107421875	3	424.517178	1270.52971	0.83101	0.00035278	3.5445	0.0015047	4.3755	0.0018575	424.5192461756017	79.845	0.12953	79.845	79.739	79.869	0					6	4	2	0	0	0	0.3105	1	19410	19410		4.7159	2.4632	1	60002	+		3787	9766	2570	2585	5015	5015					-0.0947381801231586
FCVFRNLM	8	Unmodified	_FCVFRNLM_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7902221679688	2	515.254065	1028.49358	0.49816	0.00025668	0.62264	0.00032082	1.1208	0.00057749	515.2541592124838	68.646	0.50373	68.646	68.348	68.852	0					39	17	3	0	0	0	0.3576	1	15917	15917		5.7604	0	1	197270			3788	294	2571	2586	5016	5016					-0.019529071268379994
FCVLWSSFN	9	Unmodified	_FCVLWSSFN_					0	0	0			REV__ENST00000448963.5_1_10:91598703-91598907:+|nuORF	REV__ENST00000448963.5_1_10:91598703-91598907:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7532958984375	2	551.754953	1101.49535	0.22067	0.00012175	-0.75323	-0.0004156	-0.53256	-0.00029385	551.7547823866541	35.499	1.7376	35.499	34.595	36.332	0					152	65	4	0	0	0	0.33978	1	5745	5745		1.4819	0.79152	1	164600	+		3789	11915	2572	2587	5017	5017					-0.05133574837213928
FCYLFLSKK	9	Unmodified	_FCYLFLSKK_					0	0	0			REV__ENST00000275364.7_1_7:2769015-2769117:-|nuORF	REV__ENST00000275364.7_1_7:2769015-2769117:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.812744140625	2	574.81227	1147.60999	-0.12618	-7.2528E-05	1.5991	0.00091918	1.4729	0.00084666	574.8129617629556	27.626	0.22679	27.708	27.614	27.84	0.082134					24	14	2	0	0	0	0.34646	1	3455	3455		0.6015	0	1	16787	+		3790	11283	2573	2588	5018	5018					0.04208734644726064
FDAVSVLDF	9	Unmodified	_FDAVSVLDF_					0	0	0		ENST00000502100.2_1_5:25190936-25302336:+|nuORF	ENST00000502100.2_1_5:25190936-25302336:+|nuORF	ENST00000502100.2_1_5:25190936-25302336:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2673645019531	2	506.752933	1011.49131	0.34098	0.00017279	4.3136	0.0021859	4.6546	0.0023587	507.25771121749335	88.483	0.5056	88.483	88.259	88.764	0					49	20	3	0	0	0	0.21398	1	22011	22011		16.942	3.0362	1	205940			3791	6866	2574	2589	5019	5019					-0.013973410592939217
FDDATSPSVR	10	Unmodified	_FDDATSPSVR_					0	0	0			REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7584228515625	2	547.759278	1093.504	0.34847	0.00019088	-1.3785	-0.0007551	-1.0301	-0.00056423	547.7582290991902	91.62	0.54972	91.655	91.361	91.91	0.035446					74	19	6	0	0	0	0.38912	1	22865	22865		13.042	0	1	704560	+		3792	12076	2575	2590	5020	5020					-0.03900929667042874
FDEDERWTNN	10	Unmodified	_FDEDERWTNN_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.5184631347656	3	442.517946	1324.53201	0.30771	0.00013617	1.0228	0.00045262	1.3305	0.00058879	442.51829073055814	51.078	1.0676	51.078	50.762	51.83	0					65	35	2	0	0	0	0.47161	1	10638	10638		0.69767	0.19171	1	119480			3793	5240	2576	2591	5021	5021					-0.11727651477599466
FDEDERWTNN	10	Unmodified	_FDEDERWTNN_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.5180358886719	3	442.517946	1324.53201	0.15612	6.9084E-05	1.5026	0.00066493	1.6587	0.00073401	442.51819920861647	51.052	1.0661	51.122	50.766	51.832	0.069874					72	40	3	0	0	0	0.46521	2	10472	10472;10527		1.9064	0.71303	1	109850			3794	5240	2576	2591	5022;5023	5022					-0.11727651477599466
FDEDERWTNN	10	Unmodified	_FDEDERWTNN_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	442.517946	1324.53201	0.30771	0.00013617	1.0228	0.00045262	1.3305	0.00058879	442.51829073055814	51.078	1.0676	51.078	50.762	51.83	0	-0.022324	-0.0002236	NaN	1.9064	65	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119480			3795	5240	2576	2591							-0.11727651477599466
FDEEFRTL	8	Unmodified	_FDEEFRTL_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2918090820312	2	528.753464	1055.49238	0.499	0.00026385	0.20741	0.00010967	0.70641	0.00037352	528.753245075746	65.629	0.27784	65.696	65.57	65.847	0.066872					15	10	2	0	0	0	0.35682	1	14961	14961		15.847	6.4997	1	58788			3796	4266	2577	2592	5024	5024					-0.03315126690381476
FDELGQLLQF	10	Unmodified	_FDELGQLLQF_					0	0	0			REV__ENSG00000255974|ENST00000301141|CYP2A6	REV__ENSG00000255974|ENST00000301141|CYP2A6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.771240234375	2	605.311146	1208.60774	0.47437	0.00028714	4.3803	0.0026514	4.8547	0.0029386	605.313755746144	74.033	0.46323	74.033	73.798	74.262	0					27	16	2	0	0	0	0.31616	1	17569	17569		10.074	1.3285	1	418350	+		3797	11093	2578	2593	5025	5025					0.011779774406022625
FDELGQLLQF	10	Unmodified	_FDELGQLLQF_					0	0	0			REV__ENSG00000255974|ENST00000301141|CYP2A6	REV__ENSG00000255974|ENST00000301141|CYP2A6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	605.311146	1208.60774	0.76552	0.00046338	4.1239	0.0024962	4.8894	0.0029596	605.31386573181	73.985	0.40886	74.034	73.848	74.257	0.048546	0.00056882	-0.00011781	NaN	13.906	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309580	+		3798	11093	2578	2593							0.011779774406022625
FDENPYFK	8	Unmodified	_FDENPYFK_					0	0	0		ENST00000437270.1_1_9:140535772-140535991:-|nuORF	ENST00000437270.1_1_9:140535772-140535991:-|nuORF	ENST00000437270.1_1_9:140535772-140535991:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2423095703125	2	530.242732	1058.47091	-0.036649	-1.9433E-05	-0.12719	-6.744E-05	-0.16384	-8.6873E-05	530.2425961902798	30.223	0.37514	30.299	30.175	30.55	0.075405					31	22	2	0	0	0	0.53858	1	4254	4254		2.3027	0	1	21448			3799	6510	2579	2594	5026	5026					-0.05598511719108501
FDESMAMS	8	Unmodified	_FDESMAMS_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1719055175781	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.955	1	24.955	24.455	25.455	0								0	0	0	0.38822	1	2837	2837		4.756	2.1785	1		+		3800	8239	2580	2595	5027	5027					-0.13085755039321612
FDFLAKQM	8	Unmodified	_FDFLAKQM_					0	0	0			REV__ENST00000550483.5_1_12:49218969-49220098:+|nuORF	REV__ENST00000550483.5_1_12:49218969-49220098:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7001953125	2	500.252046	998.489538	0.10453	5.2293E-05	2.7173	0.0013593	2.8218	0.0014116	500.25340979236887	34.543	0.21531	34.619	34.518	34.733	0.076244					18	10	2	0	0	0	0.35759	1	5549	5549		10.183	0	1	19796	+		3801	8120	2581	2596	5028	5028					-0.00976673348895929
FDFRCQEN	8	Unmodified	_FDFRCQEN_					0	0	0			REV__nc|ENSG00000087116|O95450-2|ADAMTS2	REV__nc|ENSG00000087116|O95450-2|ADAMTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7213745117188	2	529.721641	1057.42873	0.075672	4.0085E-05	0.2133	0.00011299	0.28897	0.00015308	529.72174475478	34.05	0.77912	34.127	33.788	34.567	0.076244					55	32	2	0	0	0	0.53557	1	5310	5310		4.3292	0	1	67145	+		3802	8279	2582	2597	5029	5029					-0.09768810399100403
FDGGQVLEMVI	11	Unmodified	_FDGGQVLEMVI_					0	0	0			REV__nc|ENSG00000182511|P07332-2|FES	REV__nc|ENSG00000182511|P07332-2|FES	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7686157226562	2	604.305007	1206.59546	0.94675	0.00057212	1.7127	0.001035	2.6595	0.0016071	604.3061199036164	66.01	0.25935	66.01	65.936	66.196	0					14	8	2	0	0	0	0.3095	1	15223	15223		13.042	5.1323	1	127350	+		3803	10565	2583	2598	5030	5030					0.00042617705935299455
FDGPLHVPM	9	Unmodified	_FDGPLHVPM_					0	0	0		nc|ENSG00000153234|P43354-2|NR4A2;NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant;ENSG00000153234|ENST00000339562|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.23370361328125	2	506.74967	1011.48479	-0.1717	-8.7011E-05	0.68997	0.00034964	0.51827	0.00026263	507.2515973813324	58.61	0.50945	58.61	58.445	58.955	0					25	17	2	0	0	0	0.25051	1	12996	12996		7.9102	4.6288	1	63764			3804	3520	2584	2599	5031	5031					-0.02049557491648102
FDGVPEFNA	9	Unmodified	_FDGVPEFNA_					0	0	0		nc|ENSG00000015592|Q9H169-3|STMN4;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4	nc|ENSG00000015592|Q9H169-3|STMN4	nc|ENSG00000015592|Q9H169-3|STMN4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7292785644531	2	498.227082	994.439611	-0.12255	-6.1055E-05	-3.9283	-0.0019572	-4.0509	-0.0020183	498.22484095532866	25.534	0.2067	25.534	25.38	25.587	0					19	15	2	0	0	0	0.25921	1	3001	3001		1.4819	0.68827	1	13109			3805	461	2585	2600	5032	5032					-0.057830847531931795
FDHDRCKVE	9	Unmodified	_FDHDRCKVE_					0	0	0			REV__CNDP1|p.Q258H|1|0.23|ENSG00000150656|chr18:74571203-74571203|G/T|missense_variant	REV__CNDP1|p.Q258H|1|0.23|ENSG00000150656|chr18:74571203-74571203|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7611694335938	2	574.761297	1147.50804	-0.033157	-1.9057E-05	-0.15891	-9.1336E-05	-0.19207	-0.00011039	574.7611723373727	24.511	1.1892	24.607	24.251	25.44	0.096075					203	106	3	0	0	0	0.32375	1	2654	2654		3.5965	0.60125	1	69581	+		3806	7824	2586	2601	5033	5033					-0.05981163444971571
FDIPEGELL	9	Unmodified	_FDIPEGELL_					0	0	0		ENST00000362042.7_1_17:46137574-46137715:+|nuORF	ENST00000362042.7_1_17:46137574-46137715:+|nuORF	ENST00000362042.7_1_17:46137574-46137715:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.76611328125	2	516.76604	1031.51753	0.3145	0.00016252	0.16089	8.3141E-05	0.47538	0.00024566	516.7660216981986	83.712	0.82774	83.734	83.414	84.241	0.021744					62	29	3	0	0	0	0.23216	1	20415	20415		14.838	3.198	1	343890			3807	6166	2587	2602	5034	5034					0.003029281122053362
FDIPIGWTF	9	Unmodified	_FDIPIGWTF_					0	0	0			REV__tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	REV__tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7750244140625	2	548.279118	1094.54368	0.50365	0.00027614	-3.5469	-0.0019447	-3.0433	-0.0016686	548.2769682418055	96.658	0.27349	96.698	96.51	96.784	0.039772					15	12	2	0	0	0	0.25579	1	24396	24396		4.3292	0.73274	1	78965	+		3808	13114	2588	2603	5035	5035					0.00019242074313297053
FDKFHFQKF	9	Unmodified	_FDKFHFQKF_					0	0	0			REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF	REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3163452148438	2	622.316566	1242.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.82	1	104.82	104.32	105.32	0								0	0	0	0.27613	1	26984	26984		3.9444	0.3479	1		+		3809	10067	2589	2604	5036	5036					0.006974246055506228
FDKKERKIRQR	11	Unmodified	_FDKKERKIRQR_					0	0	0			REV__ENSG00000169981|ENST00000396056|ZNF35	REV__ENSG00000169981|ENST00000396056|ZNF35	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.9694519042969	3	501.967069	1502.87938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.34	1	96.38	95.88	96.88	0.039772								0	0	0	0.34083	1	24276	24276		0.45452	0.35968	1		+		3810	10192	2590	2605	5037	5037					0.14805384585429238
FDLAAYHING	10	Unmodified	_FDLAAYHING_					0	0	0			REV__nc|ENSG00000215568|Q2WGN9|GAB4	REV__nc|ENSG00000215568|Q2WGN9|GAB4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7657470703125	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.555	1	36.555	36.055	37.055	0								0	0	0	0.33156	1	6255	6255		10.074	0.6908	1		+		3811	12890	2591	2606	5038	5038					-0.020077315621620073
FDLAEKRSLM	10	Unmodified	_FDLAEKRSLM_					0	0	0			REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7684326171875	2	605.318448	1208.62234	0.74457	0.0004507	-1.4745	-0.00089257	-0.72997	-0.00044187	605.8191941326971	60.442	0.093609	60.442	60.363	60.456	0					4	2	2	0	0	0	0.31691	1	13493	13493		7.2892	0.56607	1	37638	+		3812	12319	2592	2607	5039	5039					0.02637726317107081
FDLEGITTL	9	Unmodified	_FDLEGITTL_					0	0	0			REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2444763183594	2	504.76604	1007.51753	0.35183	0.00017759	0.50038	0.00025258	0.85221	0.00043017	504.76630189528044	74.72	0.45791	74.72	74.477	74.935	0					35	16	3	0	0	0	0.21603	1	17832	17832		20.454	1.1966	1	137180	+		3813	11113	2593	2608	5040	5040					0.014069281121805943
FDLHNENQFI	10	Unmodified	_FDLHNENQFI_					0	0	0		ENST00000421351.3_1_6:138411940-138412057:-|nuORF	ENST00000421351.3_1_6:138411940-138412057:-|nuORF	ENST00000421351.3_1_6:138411940-138412057:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.80419921875	2	638.801477	1275.5884	0.62595	0.00039986	2.4455	0.0015622	3.0714	0.001962	638.8032372280154	66.771	0.55329	66.771	66.635	67.188	0					45	20	3	0	0	0	0.46083	1	15518	15518		2.7352	0.23671	1	295080			3814	6453	2594	2609	5041	5041					-0.03836978850290507
FDLPEAFLC	9	Unmodified	_FDLPEAFLC_					0	0	0		ENST00000408957.4_1_2:233414953-233415175:-|nuORF	ENST00000408957.4_1_2:233414953-233415175:-|nuORF	ENST00000408957.4_1_2:233414953-233415175:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7947998046875	2	527.749336	1053.48412	0.30591	0.00016144	0.87357	0.00046102	1.1795	0.00062247	527.7496636477347	88.855	0.51535	88.855	88.679	89.194	0					37	20	2	0	0	0	0.2298	1	22140	22140		16.942	3.0362	1	159260			3815	6387	2595	2610	5042	5042					-0.04048396931352727
FDLSYEERHI	10	Unmodified	_FDLSYEERHI_					0	0	0			REV__VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	REV__VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.8792419433594	3	436.878815	1307.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.9	1	115.91	115.41	116.41	0.013062								0	0	0	0.34006	1	29442	29442		0.13989	0	1		+		3816	13331	2596	2611	5043	5043					-0.026887096788186682
FDLTFSPRWPY	11	Unmodified	_FDLTFSPRWPY_					0	0	0			REV__nc|ENSG00000122145|Q9Y458-2|TBX22	REV__nc|ENSG00000122145|Q9Y458-2|TBX22	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.91607666015625	3	476.903072	1427.68739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.568	1	14.636	14.136	15.136	0.067593								0	0	0	0.34185	1	365	365		0.094841	0	1		+		3817	8910	2597	2612	5044	5044					-0.009349558853728013
FDMFHTCLPE	10	Unmodified	_FDMFHTCLPE_					0	0	0			REV__SORL1|p.M1581Cfs*34|1|0.09|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	REV__SORL1|p.M1581Cfs*34|1|0.09|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.260986328125	2	620.262284	1238.51002	-0.77201	-0.00047885	0.10273	6.372E-05	-0.66928	-0.00041513	620.2621302965636	40.909	0.60159	40.909	40.623	41.225	0					46	21	3	0	0	0	0.46746	1	7617	7617		1.4819	0.15237	1	144430	+		3818	9279	2598	2613	5045	5045					-0.09969870751410781
FDNLSRQAEE	10	Unmodified	_FDNLSRQAEE_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6	REV__ENSG00000197616|ENST00000405093|MYH6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7683715820312	2	604.780741	1207.54693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.426	1	64.494	63.994	64.994	0.068916								0	0	0	0.3327	1	14566	14566		8.7454	0.83525	1		+		3819	10867	2599	2614	5046	5046					-0.04854159609612907
FDPNEQRF	8	Unmodified	_FDPNEQRF_					0	0	0			REV__tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	REV__tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2662963867188	2	526.743431	1051.47231	0.19795	0.00010427	0.022285	1.1739E-05	0.22024	0.00011601	526.7433745366377	57.996	0.51317	58.065	57.669	58.182	0.068375					47	19	5	0	0	0	0.52502	1	12535	12535		9.3474	0	1	2688100	+		3820	13118	2600	2615	5047	5047					-0.05136877630343406
FDPSKERLL	9	Unmodified	_FDPSKERLL_					0	0	0		ENSG00000173581|ENST00000586790|CCDC106	ENSG00000173581|ENST00000586790|CCDC106	ENSG00000173581|ENST00000586790|CCDC106	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7901611328125	2	552.806031	1103.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.821	1	79.848	79.348	80.348	0.026436								0	0	0	0.25361	1	19249	19249		8.5933	0.43775	1				3821	4551	2601	2616	5048	5048					0.04985414506040797
FDQKDFYDM	9	Unmodified	_FDQKDFYDM_					0	0	0			REV__ENSG00000104375|ENST00000419617|STK3	REV__ENSG00000104375|ENST00000419617|STK3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7681274414062	2	604.750064	1207.48558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.933	1	65.933	65.433	66.433	0								0	0	0	0.23884	1	15170	15170		11.64	1.5664	1		+		3822	8506	2602	2617	5049	5049					-0.10986807633253193
FDQLDGSFF	9	Unmodified	_FDQLDGSFF_					0	0	0			REV__ENST00000486940.2_1_13:46090326-46105393:+|nuORF	REV__ENST00000486940.2_1_13:46090326-46105393:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.759521484375	2	538.24019	1074.46583	0.44427	0.00023912	-3.6266	-0.001952	-3.1824	-0.0017129	538.7385871265249	61.046	0.14641	61.046	60.913	61.059	0					5	4	2	0	0	0	0.2446	1	13653	13653		11.64	0	1	24522	+		3823	12126	2603	2618	5050	5050					-0.06842815581717332
FDQQNCTLTF	10	Carbamidomethyl (C)	_FDQQNC(Carbamidomethyl (C))TLTF_	FDQQNC(1)TLTF		FDQQNC(48)TLTF		0	1	0		nc|ENSG00000186038|A5X5Y0-2|HTR3E;nc|ENSG00000186038|A5X5Y0-4|HTR3E;ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-3|HTR3E;nc|ENSG00000186038|A5X5Y0-6|HTR3E	nc|ENSG00000186038|A5X5Y0-2|HTR3E	nc|ENSG00000186038|A5X5Y0-2|HTR3E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.281005859375	2	637.27952	1272.54449	0.31071	0.00019801	0.76601	0.00048816	1.0767	0.00068617	637.7820795315422	94.304	0.33714	94.304	94.149	94.486	0					24	15	2	0	0	0	0.085977	1	23818	23818		47.749	11.242	1	87843			3824	5064	2604	2619	5051	5051	10				-0.08088331338944954
FDQSEPLPFV	10	Unmodified	_FDQSEPLPFV_					0	0	0			REV__FMN1|p.P1252S|1|0.3|ENSG00000248905|chr15:32888253-32888253|G/A|missense_variant	REV__FMN1|p.P1252S|1|0.3|ENSG00000248905|chr15:32888253-32888253|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3432006835938	2	589.790047	1177.56554	0.2093	0.00012344	-0.057806	-3.4093E-05	0.15149	8.9348E-05	589.7901792590158	86.898	0.9008	86.898	86.263	87.163	0					57	37	2	0	0	0	0.31456	1	21607	21607		14.838	7.549	1	714030	+		3825	12656	2605	2620	5052	5052					-0.01613997967774594
FDREIWSNEL	10	Unmodified	_FDREIWSNEL_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2150573730469	3	436.878815	1307.61462	0.78742	0.00034401	2.1193	0.00092587	2.9067	0.0012699	437.21451827803503	84.121	0.75719	84.121	83.485	84.242	0					40	25	2	0	0	0	0.4676	1	20673	20673		1.4551	0.44154	1	65142			3826	5114	2606	2621	5053	5053					-0.026887096787731934
FDSAFFTL	8	Unmodified	_FDSAFFTL_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2287292480469	2	474.229094	946.443634	-0.063502	-3.0115E-05	-0.51878	-0.00024602	-0.58228	-0.00027613	474.2287850189881	49.969	0.78083	49.969	49.679	50.46	0					44	27	2	0	0	0	0.49441	1	10338	10338		13.508	0.97634	1	107090	+		3827	11141	2607	2622	5054	5054					-0.031729952594673705
FDSDAASPR	9	Unmodified	_FDSDAASPR_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2197265625	2	483.219788	964.425024	-0.45465	-0.0002197	0.54615	0.00026391	0.091491	4.421E-05	483.2200367104651	25.805	0.59045	25.805	25.642	26.233	0					73	45	2	0	0	0	0.095436	1	3101	3101		33.445	15.31	1	49618			3828	5476	2608	2623	5055	5055					-0.05861156901335107
FDSDVGVYR	9	Unmodified	_FDSDVGVYR_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENSG00000179344|ENST00000434651|HLA-DQB1	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2509155273438	2	529.251089	1056.48762	-0.36401	-0.00019266	0.14896	7.8838E-05	-0.21505	-0.00011382	529.2511378810136	42.559	1.1914	42.559	42.248	43.439	0					108	40	5	0	0	0	0.0050339	2	8135	8135;8233		82.529	50.224	1	1280000			3829	4774	2609	2624	5056;5057	5056					-0.03836010833151704
FDSDVGVYR	9	Unmodified	_FDSDVGVYR_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENSG00000179344|ENST00000434651|HLA-DQB1	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2511596679688	2	529.251089	1056.48762	-0.19767	-0.00010461	0.12541	6.6373E-05	-0.072256	-3.8242E-05	529.2511040284006	42.452	1.079	42.542	42.316	43.395	0.089767					100	39	5	0	0	0	0.0072241	3	7975	7975;8057;8118		75.761	46.679	1	1200000			3830	4774	2609	2624	5058;5059;5060	5058					-0.03836010833151704
FDSEGVASRR	10	Unmodified	_FDSEGVASRR_					0	0	0		nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	nc|ENSG00000106078|O75128-6|COBL	nc|ENSG00000106078|O75128-6|COBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2776489257812	2	562.278169	1122.54179	-0.012052	-6.7767E-06	0.0077238	4.3429E-06	-0.0043284	-2.4338E-06	562.2780743257362	26.186	0.4169	26.278	26.103	26.52	0.091507					72	36	3	0	0	0	0.46827	1	3029	3029		1.3295	0	1	53823			3831	1505	2610	2625	5061	5061					-0.014584186815682187
FDSFSSLVR	9	Unmodified	_FDSFSSLVR_					0	0	0		LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2509155273438	2	529.269281	1056.52401	-0.39567	-0.00020942	-0.77966	-0.00041265	-1.1753	-0.00062207	529.2688098197149	42.494	0.54294	42.494	42.193	42.736	0					29	18	3	0	0	0	0.23216	1	8091	8091		14.838	2.3067	1	99845			3832	7419	2611	2626	5062	5062					-0.0019913393641672883
FDSFSSLVR	9	Unmodified	_FDSFSSLVR_					0	0	0		LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2509155273438	2	529.269281	1056.52401	-0.21973	-0.0001163	-0.17146	-9.0749E-05	-0.39119	-0.00020704	529.2694184813466	42.428	0.41215	42.517	42.291	42.703	0.089764					22	14	2	0	0	0	0.23216	1	7935	7935		14.838	2.3067	1	64375			3833	7419	2611	2626	5063	5063					-0.0019913393641672883
FDSGFFFILY	10	Unmodified	_FDSGFFFILY_					0	0	0			REV__ENSG00000132965|ENST00000380490|ALOX5AP	REV__ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.30712890625	2	628.305332	1254.59611	0.26273	0.00016507	3.1101	0.0019541	3.3728	0.0021191	628.3069783167308	94.917	0.47353	94.956	94.743	95.216	0.038872					38	19	3	0	0	0	0.37232	1	23838	23838		14.838	0.93222	1	112920	+		3834	9135	2612	2627	5064	5064					-0.021002195827122705
FDSGFFFILY	10	Unmodified	_FDSGFFFILY_					0	0	0			REV__ENSG00000132965|ENST00000380490|ALOX5AP	REV__ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	628.305332	1254.59611	0.14761	9.2743E-05	2.5623	0.0016099	2.7099	0.0017026	628.306982831477	94.969	0.65863	94.969	94.715	95.374	0	0.0067419	-0.00029268	NaN	14.838	39	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150320	+		3835	9135	2612	2627							-0.021002195827122705
FDSGFFFILY	10	Unmodified	_FDSGFFFILY_					0	0	0			REV__ENSG00000132965|ENST00000380490|ALOX5AP	REV__ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	628.305332	1254.59611	0.26273	0.00016507	3.1101	0.0019541	3.3728	0.0021191	628.3069783167308	94.917	0.47353	94.956	94.743	95.216	0.038872	-0.0067419	0.00039567	NaN	14.838	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112920	+		3836	9135	2612	2627							-0.021002195827122705
FDSLLWAIV	9	Unmodified	_FDSLLWAIV_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000006283|O43497-27|CACNA1G	ENSG00000196557|ENST00000348261|CACNA1H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2945556640625	2	532.294768	1062.57498	0.50026	0.00026629	0.048931	2.6046E-05	0.54919	0.00029233	532.2946547067003	78.684	0.53872	78.715	78.451	78.99	0.030151					37	18	3	0	0	0	0.25209	1	18934	18934		12.532	0.89125	1	298460			3837	5234;368;1189	2613	2628	5065	5065					0.04619815108412695
FDSRPRFV	8	Unmodified	_FDSRPRFV_					0	0	0		ENST00000463212.1_1_1:897013-897649:+|nuORF	ENST00000463212.1_1_1:897013-897649:+|nuORF	ENST00000463212.1_1_1:897013-897649:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.3024291992188	2	512.272158	1022.52976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.49	1	102.49	101.99	102.99	0								0	0	0	0.38822	1	26303	26303		0.69038	0	1				3838	6622	2614	2629	5066	5066					0.019400093658987316
FDSYREKL	8	Unmodified	_FDSYREKL_					0	0	0			REV__ENSG00000091127|ENST00000469408|PUS7	REV__ENSG00000091127|ENST00000469408|PUS7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2509155273438	2	529.269281	1056.52401	-0.39567	-0.00020942	-0.77966	-0.00041265	-1.1753	-0.00062207	529.2688098197149	42.494	0.54294	42.494	42.193	42.736	0					29	18	3	0	0	0	0.46036	1	8043	8043		18.135	0	1	99845	+		3839	8316	2615	2630	5067	5067					-0.0019913393641672883
FDSYREKL	8	Unmodified	_FDSYREKL_					0	0	0			REV__ENSG00000091127|ENST00000469408|PUS7	REV__ENSG00000091127|ENST00000469408|PUS7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2509155273438	2	529.269281	1056.52401	-0.21973	-0.0001163	-0.17146	-9.0749E-05	-0.39119	-0.00020704	529.2694184813466	42.428	0.41215	42.517	42.291	42.703	0.089764					22	14	2	0	0	0	0.46036	1	7888	7888		18.135	0	1	64375	+		3840	8316	2615	2630	5068	5068					-0.0019913393641672883
FDVWRKKYMRW	11	Unmodified	_FDVWRKKYMRW_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000497964.1_1_1:39924789-39929409:+|nuORF	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7590942382812	3	538.950251	1613.82892	0.47615	0.00025662	0.65313	0.000352	1.1293	0.00060862	539.2848235583284	60.687	0.96174	60.687	60.427	61.389	0					48	34	2	0	0	0	0.31097	1	13712	13712		1.3296	0.92138	1	192170			3841	2371	2616	2631	5069	5069					0.04656138936093157
FDVWRKKYMRW	11	Unmodified	_FDVWRKKYMRW_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000497964.1_1_1:39924789-39929409:+|nuORF	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.760498046875	3	538.950251	1613.82892	0.40627	0.00021896	0.98583	0.00053131	1.3921	0.00075027	539.284970918584	60.561	0.80931	60.634	60.578	61.388	0.073421					39	27	2	0	0	0	0.31097	1	13567	13567		1.3296	0.82369	1	249480			3842	2371	2616	2631	5070	5070					0.04656138936093157
FDWPSQAF	8	Unmodified	_FDWPSQAF_					0	0	0			REV__ENST00000482124.1_1_7:117395604-117398034:-|nuORF	REV__ENST00000482124.1_1_7:117395604-117398034:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2306213378906	2	499.224342	996.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.223	1	76.262	75.762	76.762	0.03923								0	0	0	0.38719	1	18152	18152		15.847	1.0089	1		+		3843	8207	2617	2632	5071	5071					-0.06422763545003818
FDWSDKYIKT	10	Unmodified	_FDWSDKYIKT_					0	0	0			REV__ENST00000490939.1_1_6:25087010-25108891:-|nuORF	REV__ENST00000490939.1_1_6:25087010-25108891:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8823547363281	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.01	1	111.01	110.51	111.51	0								0	0	0	0.33965	1	28453	28453		0.62683	0.12087	1		+		3844	12146	2618	2633	5072	5072					-0.009546375306854316
FECLDFVF	8	Unmodified	_FECLDFVF_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.23046875	2	510.230779	1018.447	0.37438	0.00019102	-2.042	-0.0010419	-1.6676	-0.00085088	510.2301889035644	48.182	0.57487	48.262	48.062	48.637	0.080032					42	19	3	0	0	0	0.52502	1	9622	9622		9.3474	0.75416	1	236850			3845	4018	2619	2634	5073	5073					-0.06148068477114066
FEDEEEAELL	10	Unmodified	_FEDEEEAELL_					0	0	0			REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF	REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.268798828125	2	612.269341	1222.52413	0.20331	0.00012448	-0.47931	-0.00029347	-0.27601	-0.00016899	612.2688581647535	75.879	1.8618	75.879	75.251	77.112	0					174	89	2	0	0	0	0.44246	1	18341	18341		6.2058	6.2058	1	4962000	+		3846	9926	2620	2635	5074	5074					-0.07823223517743827
FEDEEEAELL	10	Unmodified	_FEDEEEAELL_					0	0	0			REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF	REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.2686157226562	2	612.269341	1222.52413	0.26541	0.0001625	-0.52761	-0.00032304	-0.2622	-0.00016054	612.2688110694537	75.9	1.7999	75.944	75.328	77.128	0.044037					186	85	3	0	0	0	0.44246	1	18179	18179		6.2058	6.2058	1	4638300	+		3847	9926	2620	2635	5075	5075					-0.07823223517743827
FEDENFHY	8	Unmodified	_FEDENFHY_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2176513671875	2	550.719621	1099.42469	-0.084559	-4.6568E-05	-2.0791	-0.001145	-2.1637	-0.0011916	550.7191495590547	26.654	0.49871	26.654	26.41	26.909	0					48	32	2	0	0	0	0.3576	1	3305	3305		0.79363	0	1	22229			3848	4443	2621	2636	5076	5076					-0.12104576621186425
FEDFLLFQD	9	Unmodified	_FEDFLLFQD_					0	0	0			REV__PIR|p.P38Q|1|0.21|ENSG00000087842|chrX:15479805-15479805|G/T|missense_variant	REV__PIR|p.P38Q|1|0.21|ENSG00000087842|chrX:15479805-15479805|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7698364257812	2	587.276772	1172.53899	0.74724	0.00043884	-0.42953	-0.00025226	0.3177	0.00018658	587.2764453065595	101.93	0.47212	101.98	101.82	102.29	0.042656					80	39	3	0	0	0	0.25699	1	25938	25938		3.5965	0.31518	1	149700	+		3849	12959	2622	2637	5077	5077					-0.04037686859101086
FEDFNLQNS	9	Unmodified	_FEDFNLQNS_					0	0	0		CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7982788085938	2	557.246003	1112.47745	0.76416	0.00042582	-0.75805	-0.00042242	0.0061074	3.4033E-06	557.7470119525085	67.064	0.50221	67.064	66.782	67.285	0					33	17	3	0	0	0	0.2298	1	15578	15578		16.942	0	1	91847			3850	257	2623	2638	5078	5078					-0.0742861855837873
FEDSTKMY	8	Unmodified	_FEDSTKMY_					0	0	0		ENST00000343455.7_1_14:95562307-95562397:-|nuORF	ENST00000343455.7_1_14:95562307-95562397:-|nuORF	ENST00000343455.7_1_14:95562307-95562397:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.73748779296875	2	510.720775	1019.427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.169	1	34.246	33.746	34.746	0.076244								0	0	0	0.38822	1	5418	5418		2.3027	0	1				3851	6095	2624	2639	5079	5079					-0.08193864207726165
FEEDTWDELL	10	Unmodified	_FEEDTWDELL_					0	0	0		ENSG00000117791|ENST00000366913|MTARC2	ENSG00000117791|ENST00000366913|MTARC2	ENSG00000117791|ENST00000366913|MTARC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.85986328125	3	432.859198	1295.55576	0.61949	0.00026815	-0.65754	-0.00028462	-0.038054	-1.6472E-05	432.8584104929615	63.063	0.87769	63.063	62.941	63.819	0					39	32	2	0	0	0	0.43972	1	14318	14318		3.5871	0.5148	1	191730			3852	2019	2625	2640	5080	5080					-0.08019230763784435
FEEDTWDELL	10	Unmodified	_FEEDTWDELL_					0	0	0		ENSG00000117791|ENST00000366913|MTARC2	ENSG00000117791|ENST00000366913|MTARC2	ENSG00000117791|ENST00000366913|MTARC2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	432.859198	1295.55576	0.2529	0.00010947	0.41667	0.00018036	0.66957	0.00028983	432.85918185213296	63.047	0.38402	63.12	62.906	63.29	0.072701	0.028069	0.00039805	NaN	3.5871	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210890			3853	2019	2625	2640							-0.08019230763784435
FEEEVPRIFK	10	Unmodified	_FEEEVPRIFK_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.7743530273438	2	647.34552	1292.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.995	1	69.995	69.495	70.495	0								0	0	0	0.33738	1	16404	16404		3.2813	0.28607	1				3854	898	2626	2641	5081	5081					0.0418564174030962
FEEMRTNYI	9	Unmodified	_FEEMRTNYI_					0	0	0		nc|ENSG00000151623|P08235-4|NR3C2;ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000151623|P08235-3|NR3C2	nc|ENSG00000151623|P08235-4|NR3C2	nc|ENSG00000151623|P08235-4|NR3C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.779052734375	2	601.779156	1201.54376	0.31004	0.00018658	-0.15309	-9.2127E-05	0.15695	9.4449E-05	601.7790745950954	49.426	3.0019	49.426	48.123	51.124	0					274	104	4	0	0	0	0.32614	1	10596	10596		3.2813	0.54611	1	563460			3855	3467	2627	2642	5082	5082					-0.048951259879686404
FEERLKRR	8	Unmodified	_FEERLKRR_					0	0	0			REV__nc|ENSG00000065883|Q14004-2|CDK13	REV__nc|ENSG00000065883|Q14004-2|CDK13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3306884765625	2	567.330539	1132.64652	0.68324	0.00038762	0.3622	0.00020549	1.0454	0.00059311	567.3306714351886	84.433	1.6308	84.433	84.02	85.65	0					258	82	4	0	0	0	0.53494	1	21116	21116		4.756	0	1	2767200	+		3856	8105	2628	2643	5083	5083					0.08550747585650242
FEEVPVDWVM	10	Unmodified	_FEEVPVDWVM_					0	0	0			REV__nc|ENSG00000185252|Q16587-4|ZNF74	REV__nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.7892456054688	2	625.791732	1249.56891	-0.42382	-0.00026522	-2.8136	-0.0017607	-3.2374	-0.0020259	625.7899568904875	45.015	0.7563	45.015	44.717	45.474	0					33	26	2	0	0	0	0.46746	1	8778	8778		1.4819	0.15237	1	27399	+		3857	10664	2629	2644	5084	5084					-0.04589071185432658
FEEYRFFP	8	Unmodified	_FEEYRFFP_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7658081054688	2	567.766374	1133.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.216	1	38.216	37.716	38.716	0								0	0	0	0.38822	1	6755	6755		0.6015	0	1				3858	2281	2630	2645	5085	5085					-0.0432223244808938
FEFEGISYL	9	Unmodified	_FEFEGISYL_					0	0	0			REV__ENSG00000254685|ENST00000370898|FPGT	REV__ENSG00000254685|ENST00000370898|FPGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7669067382812	2	552.76604	1103.51753	0.32431	0.00017927	3.4219	0.0018915	3.7462	0.0020708	552.7678795857528	72.981	0.67744	73.034	72.743	73.42	0.052574					33	24	2	0	0	0	0.18364	1	17171	17171		20.454	2.3186	1	169770	+		3859	11089	2631	2646	5086	5086					-0.03009071887800019
FEFEGISYL	9	Unmodified	_FEFEGISYL_					0	0	0			REV__ENSG00000254685|ENST00000370898|FPGT	REV__ENSG00000254685|ENST00000370898|FPGT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	552.76604	1103.51753	0.14884	8.2275E-05	3.4447	0.0019041	3.5935	0.0019864	552.7678988730694	73.012	0.49066	73.012	72.883	73.373	0	-0.010995	1.4177E-05	NaN	20.454	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142000	+		3860	11089	2631	2646							-0.03009071887800019
FEFEGISYL	9	Unmodified	_FEFEGISYL_					0	0	0			REV__ENSG00000254685|ENST00000370898|FPGT	REV__ENSG00000254685|ENST00000370898|FPGT	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.76604	1103.51753	0.32431	0.00017927	3.4219	0.0018915	3.7462	0.0020708	552.7678795857528	72.981	0.67744	73.034	72.743	73.42	0.052574	0.010995	-1.0998E-05	NaN	20.454	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169770	+		3861	11089	2631	2646							-0.03009071887800019
FEFEPFLQ	8	Unmodified	_FEFEPFLQ_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7556762695312	2	528.755475	1055.4964	0.58889	0.00031138	0.21893	0.00011576	0.80782	0.00042714	528.7555568862359	93.091	0.9762	93.091	92.793	93.77	0					126	37	5	0	0	0	0.028586	5	23401	23401;23445;23487;23533;23618		108	92.822	1	4342500	+		3862	8089	2632	2647	5087;5088;5089;5090;5091	5087					-0.029130371966630264
FEFEPFLQ	8	Unmodified	_FEFEPFLQ_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7557983398438	2	528.755475	1055.4964	0.5278	0.00027907	0.25576	0.00013523	0.78355	0.00041431	528.7555931297927	93.023	1.0683	93.06	92.808	93.876	0.037369					141	43	5	0	0	0	0.040483	6	23308	23228;23269;23308;23352;23394;23446		133.7	69.466	1	4642200	+		3863	8089	2632	2647	5092;5093;5094;5095;5096;5097	5094					-0.029130371966630264
FEFEPFLQ	8	Unmodified	_FEFEPFLQ_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	528.755475	1055.4964	0.58889	0.00031138	0.21893	0.00011576	0.80782	0.00042714	528.7555568862359	93.091	0.9762	93.091	92.793	93.77	0	0.015366	-1.6064E-05	NaN	108	126	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4342500	+		3864	8089	2632	2647							-0.029130371966630264
FEFEPFLQ	8	Unmodified	_FEFEPFLQ_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	528.755475	1055.4964	0.5278	0.00027907	0.25576	0.00013523	0.78355	0.00041431	528.7555931297927	93.023	1.0683	93.06	92.808	93.876	0.037369	-0.015366	2.2876E-05	NaN	108	141	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4642200	+		3865	8089	2632	2647							-0.029130371966630264
FEFSISFDLT	10	Unmodified	_FEFSISFDLT_					0	0	0			REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B	REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8045043945312	2	603.289879	1204.56521	0.594	0.00035835	-4.4058	-0.002658	-3.8118	-0.0022996	603.287263462284	75.084	0.3302	75.128	74.967	75.297	0.044037					15	11	2	0	0	0	0.31616	1	17826	17826		10.074	1.4806	1	263490	+		3866	8789	2633	2648	5098	5098					-0.028894176876065103
FEFYWRGSQ	9	Unmodified	_FEFYWRGSQ_					0	0	0			REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.794677734375	2	610.28018	1218.54581	0.17521	0.00010693	-2.6403	-0.0016113	-2.4651	-0.0015044	610.7808065877339	56.64	0.40461	56.64	56.512	56.916	0					21	14	2	0	0	0	0.12214	1	12362	12362		27.629	11.782	1	146900	+		3867	10807	2634	2649	5099	5099					-0.054723291878644886
FEGFCLAG	8	Unmodified	_FEGFCLAG_					0	0	0		nc|ENSG00000137266|A1A5C7-4|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;SLC22A23|p.V419Rfs*50|1|0.64|ENSG00000137266|chr6:3289823-3289824|-/A|frameshift_variant;ENSG00000137266|ENST00000406686|SLC22A23	nc|ENSG00000137266|A1A5C7-4|SLC22A23	nc|ENSG00000137266|A1A5C7-4|SLC22A23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1887512207031	2	422.188914	842.363275	0.29471	0.00012442	-0.73814	-0.00031163	-0.44342	-0.00018721	422.18846760482654	101.11	0.71098	101.15	100.9	101.61	0.042839					62	43	2	0	0	0	0.54081	1	25735	25735		0.79363	0	1	345840			3868	2842	2635	2650	5100	5100					-0.06421179854180536
FEGGILNAFTS	11	Unmodified	_FEGGILNAFTS_					0	0	0		tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.78515625	2	578.287671	1154.56079	0.2388	0.00013809	0.61297	0.00035448	0.85177	0.00049257	578.2887310794598	72.062	0.29016	72.118	72.03	72.321	0.055939					11	9	2	0	0	0	0.3104	1	16866	16866		7.1017	1.3699	1	67599			3869	13561	2636	2651	5101	5101					-0.010308821105127208
FEHLCSYL	8	Unmodified	_FEHLCSYL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.23382568359375	2	506.233853	1010.45315	0.32249	0.00016326	0.34739	0.00017586	0.66988	0.00033912	506.23363066893995	53.538	1.9046	53.538	52.616	54.52	0					134	73	3	0	0	0	0.52924	1	11518	11518		8.5933	2.2392	1	414180			3870	486	2637	2652	5102	5102					-0.0516555024560148
FEIANAATHF	10	Unmodified	_FEIANAATHF_					0	0	0			REV__ENST00000258341.4_1_1:183113057-183113138:+|nuORF	REV__ENST00000258341.4_1_1:183113057-183113138:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7650146484375	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.505	1	35.505	35.005	36.005	0								0	0	0	0.3315	1	5938	5938		10.151	2.2404	1		+		3871	11223	2638	2653	5103	5103					-0.020077315621620073
FEIPYQNFSI	10	Unmodified	_FEIPYQNFSI_					0	0	0			REV__ENST00000486155.1_1_6:35928714-35992326:-|nuORF	REV__ENST00000486155.1_1_6:35928714-35992326:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.3294677734375	2	629.311146	1256.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.922	1	83.922	83.422	84.422	0								0	0	0	0.31912	1	20657	20657		15.248	1.3424	1		+		3872	8704	2639	2654	5104	5104					-0.01030022559370991
FEIRMERH	8	Unmodified	_FEIRMERH_					0	0	0		tr|U7T5Z8|U7T5Z8_FUSNUL-methioninegamma-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00144PE=3SV=1	tr|U7T5Z8|U7T5Z8_FUSNUL-methioninegamma-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00144PE=3SV=1	tr|U7T5Z8|U7T5Z8_FUSNUL-methioninegamma-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00144PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.757568359375	2	559.2822	1116.54985	0.47215	0.00026406	1.3551	0.00075789	1.8273	0.001022	559.283579921792	68.145	0.49567	68.145	67.973	68.469	0					24	17	2	0	0	0	0.35069	1	15889	15889		20.454	7.9221	1	148310			3873	13730	2640	2655	5105	5105					-0.0037656296578916226
FEKDHEVL	8	Unmodified	_FEKDHEVL_					0	0	0			REV__ENSG00000101144|ENST00000395863|BMP7	REV__ENSG00000101144|ENST00000395863|BMP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.75628662109375	2	508.756007	1015.49746	0.69539	0.00035378	-0.46083	-0.00023445	0.23456	0.00011933	508.75569646602884	66.093	0.51585	66.093	65.936	66.452	0					29	18	2	0	0	0	0.53202	1	15244	15244		6.7232	0	1	149700	+		3874	8412	2641	2656	5106	5106					-0.00966822827751912
FEKDSCKRMD	10	Unmodified	_FEKDSCKRMD_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.86181640625	3	420.190007	1257.54819	-0.084355	-3.5445E-05	-2.153	-0.00090467	-2.2374	-0.00094011	420.1891072831405	34.598	0.19047	34.674	34.542	34.733	0.076244					12	9	2	0	0	0	0.31837	1	5511	5511		1.9064	0.1641	1	13815	+		3875	9182	2642	2657	5107	5107					-0.07027984836713586
FEKVIVMNT	9	Unmodified	_FEKVIVMNT_					0	0	0			REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.8094482421875	2	540.791535	1079.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.815	1	60.815	60.315	61.315	0								0	0	0	0.21325	1	13605	13605		16.149	0.30192	1		+		3876	10626	2643	2658	5108	5108					0.03191553885403664
FELFVLACLF	10	Unmodified	_FELFVLACLF_					0	0	0			REV__ENST00000466151.1_1_1:17409174-17409327:-|nuORF	REV__ENST00000466151.1_1_1:17409174-17409327:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.321044921875	2	601.319928	1200.6253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.41	1	107.43	106.93	107.93	0.025711								0	0	0	0.33711	1	27517	27517		3.5965	0.31518	1		+		3877	11998	2644	2659	5109	5109					0.033016014419217754
FELKIFDRL	9	Unmodified	_FELKIFDRL_					0	0	0			REV__ENSG00000076513|ENST00000261739|ANKRD13A	REV__ENSG00000076513|ENST00000261739|ANKRD13A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.858154296875	2	590.839874	1179.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.733	1	50.802	50.302	51.302	0.069874								0	0	0	0.15116	1	10402	10402		25.399	4.9848	1		+		3878	8204	2645	2660	5110	5110					0.082548644368444
FELSQAAPL	9	Unmodified	_FELSQAAPL_					0	0	0		ENST00000521527.5_1_5:153476717-153514692:+|nuORF	ENST00000521527.5_1_5:153476717-153514692:+|nuORF	ENST00000521527.5_1_5:153476717-153514692:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.9352111816406	2	488.260925	974.507297	-0.30748	-0.00015013	2.3793	0.0011617	2.0718	0.0010116	488.26165977474966	44.633	0.68839	44.633	44.387	45.075	0					34	24	2	0	0	0	0.25051	1	8723	8723		7.9102	0.62092	1	55088			3879	6960	2646	2661	5111	5111					0.01902365177613774
FEPDIYFFV	9	Unmodified	_FEPDIYFFV_					0	0	0			REV__ENST00000489116.1_1_6:28415047-28415581:+|nuORF	REV__ENST00000489116.1_1_6:28415047-28415581:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2850952148438	2	588.784233	1175.55391	-0.24204	-0.00014251	-0.18461	-0.00010869	-0.42665	-0.0002512	588.7840292288723	14.588	0.085457	14.588	14.55	14.635	0					15	10	2	0	0	0	0.26021	1	395	395		0	0	1	22543	+		3880	10068	2647	2662	5112	5112					-0.026841949911158736
FEPPHMHLA	9	Unmodified	_FEPPHMHLA_					0	0	0			REV__ENST00000475490.1_2_6:151162220-151163082:+|nuORF	REV__ENST00000475490.1_2_6:151162220-151163082:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7476806640625	2	539.760569	1077.50659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.436	1	95.475	94.975	95.975	0.038872								0	0	0	0.21527	1	24000	24000		15.847	0.5987	1		+		3881	12051	2648	2663	5113	5113					-0.029067527430697737
FEPPSAPGAP	10	Unmodified	_FEPPSAPGAP_					0	0	0		ENST00000258052.7_1_6:109762145-109762325:+|nuORF	ENST00000258052.7_1_6:109762145-109762325:+|nuORF	ENST00000258052.7_1_6:109762145-109762325:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2228698730469	2	485.23745	968.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.476	1	89.476	88.976	89.976	0								0	0	0	0.33861	1	22343	22343		1.8442	1.0506	1				3882	5853	2649	2664	5114	5114					-0.025144943735199377
FEPRDQGG	8	Unmodified	_FEPRDQGG_					0	0	0		ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2093811035156	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.837	1	86.837	86.337	87.337	0								0	0	0	0.38822	1	21545	21545		2.5775	0.73324	1				3883	6490	2650	2665	5115	5115					-0.05213122210182064
FEQANEPHF	9	Unmodified	_FEQANEPHF_					0	0	0			REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.764892578125	2	559.748713	1117.48287	0.67202	0.00037616	-3.3514	-0.0018759	-2.6793	-0.0014998	560.2485912442068	92.498	0.077057	92.534	92.475	92.552	0.03653					4	2	2	0	0	0	0.28587	1	23107	23107		8.5933	2.3875	1	24590	+		3884	10437	2651	2666	5116	5116					-0.07116894975911237
FEQICLFMF	9	Unmodified	_FEQICLFMF_					0	0	0		ENST00000374794.7_2_10:34759149-34806035:-|nuORF	ENST00000374794.7_2_10:34759149-34806035:-|nuORF	ENST00000374794.7_2_10:34759149-34806035:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.274658203125	2	589.274664	1176.53477	-0.17567	-0.00010352	-0.65207	-0.00038425	-0.82774	-0.00048777	589.2744487150053	20.477	0.21723	20.477	20.372	20.589	0					34	22	2	0	0	0	0.34646	1	1634	1634		0.6015	0.076735	1	21351			3885	6237	2652	2667	5117	5117					-0.04643190878027781
FEQICLFMF	9	Unmodified	_FEQICLFMF_					0	0	0		ENST00000374794.7_2_10:34759149-34806035:-|nuORF	ENST00000374794.7_2_10:34759149-34806035:-|nuORF	ENST00000374794.7_2_10:34759149-34806035:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.27587890625	2	589.274664	1176.53477	0.29523	0.00017397	-0.57036	-0.0003361	-0.27513	-0.00016213	589.2745704263033	20.913	0.085129	21.012	20.956	21.041	0.099497					12	9	2	0	0	0	0.34646	1	1625	1625		0.6015	0.076735	1	13884			3886	6237	2652	2667	5118	5118					-0.04643190878027781
FEREEINIL	9	Unmodified	_FEREEINIL_					0	0	0		tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.80908203125	2	581.808771	1161.60299	0.64674	0.00037628	-0.71802	-0.00041775	-0.071282	-4.1472E-05	581.8082365692952	69.5	0.442	69.5	69.319	69.761	0					35	14	3	0	0	0	0.081383	1	16239	16239		36.506	9.283	1	367000			3887	13599	2653	2668	5119	5119					0.028650932978507626
FEREEINIL	9	Unmodified	_FEREEINIL_					0	0	0		tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.807861328125	2	581.808771	1161.60299	0.47337	0.00027541	-0.44516	-0.000259	0.028217	1.6417E-05	581.8083795123498	69.365	0.47365	69.427	69.279	69.752	0.062126					29	16	2	0	0	0	0.22083	1	16106	16106		16.149	0.30192	1	353730			3888	13599	2653	2668	5120	5120					0.028650932978507626
FERKKTEL	8	Unmodified	_FERKKTEL_					0	0	0		nc|ENSG00000124532|Q9HD23-2|MRS2;ENSG00000124532|ENST00000378386|MRS2;nc|ENSG00000124532|Q9HD23-4|MRS2	nc|ENSG00000124532|Q9HD23-2|MRS2	nc|ENSG00000124532|Q9HD23-2|MRS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2871704101562	2	525.800749	1049.58694	0.19514	0.0001026	-0.051116	-2.6877E-05	0.14402	7.5726E-05	525.8006201519607	52.534	0.61918	52.601	52.376	52.996	0.067173					56	24	3	0	0	0	0.50159	1	11062	11062		12.532	2.4576	1	489620			3889	2258	2654	2669	5121	5121					0.06413431851615314
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.310302734375	3	525.309718	1572.90732	0.48828	0.0002565	0.046084	2.4208E-05	0.53436	0.00028071	525.3096752915545	98.808	1.1811	98.808	98.4	99.581	0					114	73	2	0	0	0	0.4185	1	25115	25115		0.094841	0.094841	1	123480			3890	2196	2655	2670	5122	5122					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3092041015625	3	525.309718	1572.90732	0.38461	0.00020204	0.099778	5.2414E-05	0.48439	0.00025445	525.3095093462488	100.53	0.87159	100.53	99.887	100.76	0					149	48	4	0	0	0	0.4185	1	25547	25547		0.094841	0.011491	1	204230			3891	2196	2655	2670	5123	5123					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3093872070312	3	525.309718	1572.90732	0.34107	0.00017917	-0.075312	-3.9562E-05	0.26576	0.00013961	525.309627384429	100.87	0.87909	100.87	100.7	101.58	0					136	52	3	0	0	0	0.4185	4	25811	25811;25854;25898;25935		0.094841	0.011491	1	234210			3892	2196	2655	2670	5124;5125;5126;5127	5124					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.309814453125	3	525.309718	1572.90732	0.36284	0.0001906	0.29132	0.00015304	0.65416	0.00034364	525.3095879109993	100.43	0.95477	100.47	99.956	100.91	0.042839					144	53	4	0	0	0	0.4185	1	25537	25537		0.094841	0.011491	1	238100			3893	2196	2655	2670	5128	5128					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.309814453125	3	525.309718	1572.90732	0.34344	0.00018041	-0.052869	-2.7773E-05	0.29057	0.00015264	525.3096723299997	100.9	0.75854	100.94	100.69	101.45	0.042839					99	45	3	0	0	0	0.4185	3	25689	25689;25732;25783		0.094841	0.011491	1	200010			3894	2196	2655	2670	5129;5130;5131	5129					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7728881835938	3	525.309718	1572.90732	0.39459	0.00020728	0.095899	5.0377E-05	0.49049	0.00025766	525.3096928747643	99.371	0.43494	99.414	99.166	99.601	0.042839					44	28	2	0	0	0	0.31101	1	25139	25139		0.094841	0	1	81810			3895	2196	2655	2670	5132	5132					0.1437870756551547
FESIIHEF	8	Unmodified	_FESIIHEF_					0	0	0		ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF	ENST00000423527.5_1_3:31574490-31661461:+|nuORF	ENST00000423527.5_1_3:31574490-31661461:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.251708984375	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.221	1	87.221	86.721	87.721	0								0	0	0	0.38822	1	21663	21663		5.2307	1.2863	1				3896	3913	2656	2671	5133	5133					-0.01777921339430577
FESLDNQEF	9	Unmodified	_FESLDNQEF_					0	0	0		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7460327148438	2	564.745836	1127.47712	-0.1173	-6.6246E-05	0.19043	0.00010755	0.073129	4.1299E-05	564.7457975654013	39.849	0.46207	39.849	39.661	40.123	0					24	15	2	0	0	0	0.32614	1	7262	7262		3.2813	0	1	43953			3897	1754	2657	2672	5134	5134					-0.08152038278217333
FESLEGPQL	9	Unmodified	_FESLEGPQL_					0	0	0			REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2556457519531	2	510.25584	1018.49713	0.1912	9.7562E-05	0.1843	9.4039E-05	0.3755	0.0001916	510.2558356073484	73.269	0.50139	73.322	73.008	73.51	0.052574					34	19	2	0	0	0	0.091044	1	17248	17248		34.402	1.616	1	808470	+		3898	13142	2658	2673	5135	5135					-0.0113824254760857
FESLEGPQL	9	Unmodified	_FESLEGPQL_					0	0	0			REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	510.25584	1018.49713	0.028628	1.4607E-05	0.41595	0.00021224	0.44457	0.00022685	510.2559339958102	73.324	0.48799	73.324	73.027	73.515	0	0.0011692	0.00014153	NaN	34.402	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1138100	+		3899	13142	2658	2673							-0.0113824254760857
FESLEGPQL	9	Unmodified	_FESLEGPQL_					0	0	0			REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	510.25584	1018.49713	0.1912	9.7562E-05	0.1843	9.4039E-05	0.3755	0.0001916	510.2558356073484	73.269	0.50139	73.322	73.008	73.51	0.052574	-0.0011692	-9.4869E-05	NaN	34.402	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	808470	+		3900	13142	2658	2673							-0.0113824254760857
FETEEANRYF	10	Unmodified	_FETEEANRYF_					0	0	0		MYO18B|p.S2483Y|1|0.11|ENSG00000133454|chr22:26027422-26027422|C/A|missense_variant	MYO18B|p.S2483Y|1|0.11|ENSG00000133454|chr22:26027422-26027422|C/A|missense_variant	MYO18B|p.S2483Y|1|0.11|ENSG00000133454|chr22:26027422-26027422|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.86297607421875	3	435.863053	1304.56733	0.55659	0.0002426	-0.71797	-0.00031294	-0.16138	-7.034E-05	435.86281563296035	47.571	0.58421	47.571	47.293	47.877	0					54	19	4	0	0	0	0.45632	1	9568	9568		3.5871	0.5148	1	137700			3901	7439	2659	2674	5136	5136					-0.07276988949820407
FETFVFVGF	9	Unmodified	_FETFVFVGF_					0	0	0			REV__nc|ENSG00000203805|Q5VZY2-4|PLPP4	REV__nc|ENSG00000203805|Q5VZY2-4|PLPP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.764404296875	2	546.773668	1091.53278	0.19518	0.00010672	3.8757	0.0021191	4.0709	0.0022259	546.7776513082273	71.861	0.61204	71.917	71.54	72.152	0.055931					22	21	2	0	0	0	0.21398	1	16819	16819		16.942	1.0951	1	103780	+		3902	10933	2660	2675	5137	5137					-0.009321602999534662
FETGFEKGGQT	11	Unmodified	_FETGFEKGGQT_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	nc|ENSG00000103342|P15170|GSPT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3344116210938	2	600.78021	1199.54587	0.36491	0.00021923	-3.6807	-0.0022113	-3.3158	-0.0019921	601.2797035442004	88.937	0.2717	88.969	88.846	89.117	0.032257					13	10	2	0	0	0	0.31013	1	22026	22026		9.544	3.3382	1	46936			3903	1365;5197	2661	2676	5138	5138					-0.04592373978516662
FEVFVDTII	9	Unmodified	_FEVFVDTII_					0	0	0		tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7933959960938	2	541.792058	1081.56956	0.31486	0.00017059	0.79013	0.00042809	1.105	0.00059868	541.7926278489305	95.159	0.34737	95.159	95.026	95.374	0					23	15	2	0	0	0	0.32112	1	24126	24126		3.9444	0.3479	1	97953			3904	13737	2662	2677	5139	5139					0.032040915259585745
FEVFVDTII	9	Unmodified	_FEVFVDTII_					0	0	0		tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.792724609375	2	541.792058	1081.56956	0.30672	0.00016618	0.43327	0.00023474	0.74	0.00040092	541.7922932211019	95.143	0.36455	95.182	95.043	95.407	0.038872					24	14	2	0	0	0	0.25979	1	23916	23916		11.64	0.52583	1	111820			3905	13737	2662	2677	5140	5140					0.032040915259585745
FEVGGSPSNTR	11	Unmodified	_FEVGGSPSNTR_					0	0	0		PPP3CC-PIWIL2|1|fusion;nc|ENSG00000120910|P48454-2|PPP3CC;ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000120910|P48454-3|PPP3CC	PPP3CC-PIWIL2|1|fusion	PPP3CC-PIWIL2|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7927856445312	2	575.778002	1149.54145	0.35843	0.00020637	1.874	0.001079	2.2324	0.0012854	575.7791712631945	73.576	1.6039	73.629	73.461	75.065	0.052567					121	58	3	0	0	0	0.32422	1	17660	17660		15.248	1.3424	1	1066500			3906	7675	2663	2678	5141	5141					-0.027338384014456096
FEVLARRTR	9	Unmodified	_FEVLARRTR_					0	0	0			REV__ENSG00000110104|ENST00000227520|CCDC86	REV__ENSG00000110104|ENST00000227520|CCDC86	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7836303710938	2	574.338364	1146.66217	0.35023	0.00020115	-1.2237	-0.00070281	-0.87346	-0.00050166	574.8394426353898	91.857	0.27387	91.893	91.774	92.048	0.03653					10	9	2	0	0	0	0.25644	1	22885	22885		3.9444	0.66309	1	49786	+		3907	8661	2664	2679	5142	5142					0.0947103410269392
FEVPPEKVF	9	Unmodified	_FEVPPEKVF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7836303710938	2	546.292225	1090.5699	0.27896	0.00015239	0.01611	8.8009E-06	0.29507	0.00016119	546.2918902493271	94.804	0.47523	94.842	94.639	95.114	0.038086					27	19	2	0	0	0	0.21398	1	23767	23767		16.942	6.1184	1	67891	+		3908	9733	2665	2680	5143	5143					0.028235112458105505
FEVPPEKVF	9	Unmodified	_FEVPPEKVF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	546.292225	1090.5699	0.27896	0.00015239	0.01611	8.8009E-06	0.29507	0.00016119	546.2918902493271	94.804	0.47523	94.842	94.639	95.114	0.038086	0.017525	-0.00047486	NaN	16.942	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67891	+		3909	9733	2665	2680							0.028235112458105505
FEWLKQCRF	9	Unmodified	_FEWLKQCRF_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5558776855469	3	419.546343	1255.6172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.874	1	41.964	41.464	42.464	0.089764								0	0	0	0.26312	1	7731	7731		6.6304	3.7871	1				3910	532	2666	2681	5144	5144					-0.00038532754865627794
FFAGFLLF	8	Unmodified	_FFAGFLLF_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2615661621094	2	481.262739	960.510926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.922	1	64.922	64.422	65.422	0								0	0	0	0.38643	1	14861	14861		17.087	5.9721	1		+		3911	11010	2667	2682	5145	5145					0.02909079742130416
FFAGFLLF	8	Unmodified	_FFAGFLLF_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2618713378906	2	481.262739	960.510926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.815	1	64.884	64.384	65.384	0.068916								0	0	0	0.38822	1	14682	14682		6.3541	0	1		+		3912	11010	2667	2682	5146	5146					0.02909079742130416
FFALLYFLV	9	Unmodified	_FFALLYFLV_					0	0	0			REV__ENST00000316902.11_1_14:23652243-23652300:-|nuORF	REV__ENST00000316902.11_1_14:23652243-23652300:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8267211914062	2	566.825704	1131.63685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.526	1	30.602	30.102	31.102	0.075403								0	0	0	0.29233	1	4331	4331		0.6015	0	1		+		3913	11384	2668	2683	5147	5147					0.07630166527542315
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(190)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2399291992188	2	552.239332	1102.46411	0.49957	0.00027588	-0.0083819	-4.6288E-06	0.49119	0.00027125	552.2394280090683	62.339	2.5835	62.339	62.018	64.601	0					260	94	5	0	0	0	7.3095E-13	12	14070	14024;14070;14116;14159;14205;14256;14302;14345;14397;14443;14489;14540		185.05	130.28	1	11460000		+	3914	219	2669	2684	5148;5149;5150;5151;5152;5153;5154;5155;5156;5157;5158;5159	5149		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(190)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2398071289062	2	552.239332	1102.46411	0.73864	0.00040791	-0.43939	-0.00024265	0.29925	0.00016526	552.2391624481654	65.144	5.1861	65.144	63.946	69.132	0					451	192	5	0	0	0	7.3095E-13	19	14881	14588;14833;14881;14923;14967;15011;15058;15106;15150;15192;15238;15287;15325;15373;15546;15591;15646;15814;15865		185.05	130.28	1	6094300		+	3915	219	2669	2684	5160;5161;5162;5163;5164;5165;5166;5167;5168;5169;5170;5171;5172;5173;5174;5175;5176;5177;5178	5162		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(58)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.239990234375	2	552.239332	1102.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.38	1	68.38	67.88	68.88	0								0	0	0	0.029669	1	15914	15914		57.722	17.772	1			+	3916	219	2669	2684	5179	5179		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(42)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2395629882812	2	552.239332	1102.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.111	1	69.111	68.611	69.611	0								0	0	0	0.072004	1	16135	16135		41.956	15.687	1			+	3917	219	2669	2684	5180	5180		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(190)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2395629882812	2	552.239332	1102.46411	0.52142	0.00028795	-0.042542	-2.3493E-05	0.47888	0.00026446	552.2393553023566	62.202	2.603	62.275	61.988	64.591	0.073421					255	96	5	0	0	0	7.3095E-13	11	13854	13854;13896;13939;13986;14031;14072;14120;14166;14209;14255;14305		185.05	130.28	1	10120000		+	3918	219	2669	2684	5181;5182;5183;5184;5185;5186;5187;5188;5189;5190;5191	5181		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(190)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2396850585938	2	552.239332	1102.46411	0.6549	0.00036166	-0.368	-0.00020322	0.2869	0.00015844	552.2391913428607	65.056	4.969	65.125	64.228	69.197	0.068916					484	186	5	0	0	0	7.3095E-13	20	14702	14658;14702;14748;14792;14835;14875;14919;14965;15012;15063;15108;15149;15205;15265;15394;15445;15490;15614;15666;15736		185.05	130.28	1	6512000		+	3919	219	2669	2684	5192;5193;5194;5195;5196;5197;5198;5199;5200;5201;5202;5203;5204;5205;5206;5207;5208;5209;5210;5211	5193		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(63)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2393188476562	2	552.239332	1102.46411	0.46427	0.00025639	5.2071E-05	2.8756E-08	0.46432	0.00025642	552.2391415790855	69.248	0.89731	69.31	69.19	70.087	0.062126					60	34	2	0	0	0	0.013982	1	16040	16040		62.573	31.936	1	191850		+	3920	219	2669	2684	5212	5212		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(79)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2396850585938	2	552.239332	1102.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.768	1	63.839	63.339	64.339	0.071018								0	0	0	0.0034055	1	14365	14365		78.728	34.87	1			+	3921	219	2669	2684	5213	5213		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(63)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.239501953125	2	552.239332	1102.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.931	1	64.002	63.502	64.502	0.071018								0	0	0	0.020552	1	14415	14415		62.573	26.446	1			+	3922	219	2669	2684	5214	5214		7			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(73)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.239501953125	2	552.239332	1102.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.101	1	64.172	63.672	64.672	0.071014								0	0	0	0.0052898	1	14467	14467		72.968	16.791	1			+	3923	219	2669	2684	5215	5215		7			-0.08302192661994923
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2422485351562	2	544.241875	1086.4692	0.28996	0.00015781	-0.068294	-3.7168E-05	0.22167	0.00012064	544.241766248034	74.108	1.3952	74.108	73.829	75.225	0					128	51	4	0	0	0	3.2353E-09	6	17635	17635;17684;17729;17776;17828;17877		171.09	116.31	1	4372300		+	3924	219	2669	2685	5216;5217;5218;5219;5220;5221	5216					-0.07057888799363354
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2418823242188	2	544.241875	1086.4692	0.46272	0.00025183	-0.2652	-0.00014434	0.19751	0.00010749	544.2416970513419	74.039	1.6543	74.088	73.876	75.53	0.048546					135	59	4	0	0	0	1.3975E-05	6	17509	17469;17509;17558;17601;17644;17699		145.13	92.861	1	2969100		+	3925	219	2669	2685	5222;5223;5224;5225;5226;5227	5223					-0.07057888799363354
FFDAQEVLL	9	Unmodified	_FFDAQEVLL_					0	0	0		nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2821044921875	2	541.281857	1080.54916	0.47605	0.00025768	0.3697	0.00020011	0.84576	0.00045779	541.2818112266227	85.598	0.39667	85.598	85.482	85.879	0					42	18	3	0	0	0	0.091044	1	21177	21177		34.402	5.3201	1	152930			3926	766	2670	2686	5228	5228					0.012109208661513549
FFDAQEVLL	9	Unmodified	_FFDAQEVLL_					0	0	0		nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2818603515625	2	541.281857	1080.54916	0.68119	0.00036872	0.093597	5.0662E-05	0.77479	0.00041938	541.2817917710528	85.64	0.5538	85.665	85.401	85.954	0.025169					41	21	3	0	0	0	0.17428	1	21012	21012		21.537	5.6898	1	175510			3927	766	2670	2686	5229	5229					0.012109208661513549
FFDAQEVLL	9	Unmodified	_FFDAQEVLL_					0	0	0		nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	541.281857	1080.54916	0.47605	0.00025768	0.3697	0.00020011	0.84576	0.00045779	541.2818112266227	85.598	0.39667	85.598	85.482	85.879	0	-0.033293	0.00011412	NaN	34.402	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152930			3928	766	2670	2686							0.012109208661513549
FFDAQEVLL	9	Unmodified	_FFDAQEVLL_					0	0	0		nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	541.281857	1080.54916	0.68119	0.00036872	0.093597	5.0662E-05	0.77479	0.00041938	541.2817917710528	85.64	0.5538	85.665	85.401	85.954	0.025169	0.033293	-0.00018478	NaN	34.402	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175510			3929	766	2670	2686							0.012109208661513549
FFDEYFVLL	9	Unmodified	_FFDEYFVLL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.800048828125	2	596.799883	1191.58521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.05	1	107.05	106.55	107.55	0								0	0	0	0.17567	1	27617	27617		21.747	10.106	1				3930	5518	2671	2687	5230	5230					-0.0029162195701246674
FFDEYFVLL	9	Unmodified	_FFDEYFVLL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3021240234375	2	596.799883	1191.58521	0.087823	5.2413E-05	0.16314	9.7364E-05	0.25097	0.00014978	596.7997518453967	106.9	0.22084	106.93	106.84	107.06	0.025711					35	21	2	0	0	0	0.29576	1	27386	27386		7.2892	1.0834	1	81459			3931	5518	2671	2687	5231	5231					-0.0029162195701246674
FFDLRRVYR	9	Unmodified	_FFDLRRVYR_					0	0	0			REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.9061584472656	3	424.571768	1270.69348	0.25295	0.0001074	-0.041695	-1.7702E-05	0.21126	8.9694E-05	424.5716945214482	45.987	2.4588	45.987	45.586	48.045	0					275	98	6	0	0	0	0.29718	1	9315	9315		7.1017	1.8048	1	1452600	+		3932	9147	2672	2688	5232	5232					0.06895607136789295
FFDNISSEL	9	Unmodified	_FFDNISSEL_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.253662109375	2	536.253297	1070.49204	0.39176	0.00021008	-0.049906	-2.6762E-05	0.34186	0.00018332	536.2531798603605	76.906	0.46864	76.906	76.675	77.144	0					32	16	3	0	0	0	0.036979	1	18529	18529		65.235	34.598	1	300640			3933	3416	2673	2689	5233	5233					-0.04038546410242816
FFDNISSEL	9	Unmodified	_FFDNISSEL_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.253173828125	2	536.253297	1070.49204	0.63028	0.00033799	-0.29405	-0.00015768	0.33623	0.00018031	536.2530261455744	76.857	0.56858	76.896	76.639	77.207	0.03923					25	20	2	0	0	0	0.064501	1	18357	18357		56.177	25.541	1	437370			3934	3416	2673	2689	5234	5234					-0.04038546410242816
FFDPHQSTF	9	Unmodified	_FFDPHQSTF_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8268432617188	2	563.253631	1124.49271	0.35949	0.00020248	2.0147	0.0011348	2.3742	0.0013373	563.7562805870339	53.578	0.24227	53.578	53.469	53.711	0					12	8	2	0	0	0	0.2418	1	11407	11407		13.906	2.2658	1	55589			3935	5276	2674	2690	5235	5235					-0.06455706970518804
FFDPSLLHL	9	Unmodified	_FFDPSLLHL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.792724609375	2	544.792392	1087.57023	0.54094	0.0002947	0.34765	0.0001894	0.8886	0.0004841	544.792515247008	79.483	0.82886	79.483	79.223	80.051	0					64	28	3	0	0	0	0.015682	2	19293	19293;19333		61.357	45.51	1	514890			3936	987	2675	2691	5236;5237	5236					0.0299493096565584
FFDPSLLHL	9	Unmodified	_FFDPSLLHL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.79296875	2	544.792392	1087.57023	0.28458	0.00015504	0.44688	0.00024346	0.73146	0.0003985	544.7926491575336	79.475	0.91122	79.501	79.249	80.16	0.026428					68	32	3	0	0	0	0.028398	2	19166	19119;19166		52.268	35.326	1	572180			3937	987	2675	2691	5238;5239	5239					0.0299493096565584
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3347778320312	2	601.334424	1200.6543	0.26704	0.00016058	0.374	0.0002249	0.64104	0.00038548	601.3345460929169	89.486	1.4169	89.486	89.267	90.683	0					128	55	5	0	0	0	4.9593E-05	8	22365	22315;22365;22408;22449;22497;22551;22559;22614		111.29	88.551	1	3419300			3938	987	2676	2692	5240;5241;5242;5243;5244;5245;5246;5247	5241					0.06199462062568273
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3350219726562	2	601.334424	1200.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.345	1	89.378	88.878	89.878	0.032257								0	0	0	0.009658	1	22145	22145		81.89	59.154	1				3939	987	2676	2692	5248	5248					0.06199462062568273
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3347778320312	2	601.334424	1200.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.495	1	89.527	89.027	90.027	0.032257								0	0	0	3.8002E-19	1	22191	22191		149.99	118.73	1				3940	987	2676	2692	5249	5249					0.06199462062568273
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3348388671875	2	601.334424	1200.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.63	1	89.664	89.164	90.164	0.034065								0	0	0	2.0708E-07	1	22232	22232		111.29	87.497	1				3941	987	2676	2692	5250	5250					0.06199462062568273
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3348388671875	2	601.334424	1200.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.788	1	89.822	89.322	90.322	0.034065								0	0	0	0.043991	1	22280	22280		62.573	43.316	1				3942	987	2676	2692	5251	5251					0.06199462062568273
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3343505859375	2	601.334424	1200.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.951	1	89.985	89.485	90.485	0.034065								0	0	0	0.15815	1	22330	22330		36.127	25.303	1				3943	987	2676	2692	5252	5252					0.06199462062568273
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3334350585938	2	601.334424	1200.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.148	1	90.182	89.682	90.682	0.034065								0	0	0	0.15815	1	22391	22391		36.127	25.303	1				3944	987	2676	2692	5253	5253					0.06199462062568273
FFDSVQVVF	9	Unmodified	_FFDSVQVVF_					0	0	0		ENST00000534966.1_1_12:121222241-121229350:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3	ENST00000534966.1_1_12:121222241-121229350:-|nuORF	ENST00000534966.1_1_12:121222241-121229350:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2770385742188	2	544.276575	1086.5386	0.50244	0.00027347	-0.055429	-3.0168E-05	0.44701	0.0002433	544.2764873714867	88.109	1.0169	88.109	87.855	88.872	0					93	39	4	0	0	0	0.0043658	3	21933	21933;21973;22019		96.111	62.008	1	1145600			3945	3668	2677	2693	5254;5255;5256	5254					-0.0012106178828616976
FFDSVQVVF	9	Unmodified	_FFDSVQVVF_					0	0	0		ENST00000534966.1_1_12:121222241-121229350:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3	ENST00000534966.1_1_12:121222241-121229350:-|nuORF	ENST00000534966.1_1_12:121222241-121229350:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2767944335938	2	544.276575	1086.5386	0.36549	0.00019893	0.12713	6.9193E-05	0.49261	0.00026812	544.2765513376711	88.125	1.4178	88.155	87.881	89.299	0.030037					107	55	3	0	0	0	0.0072241	4	21780	21736;21780;21823;21874		75.761	41.658	1	1336000			3946	3668	2677	2693	5257;5258;5259;5260	5258					-0.0012106178828616976
FFDTRYLLE	9	Unmodified	_FFDTRYLLE_					0	0	0			REV__MGAT1|p.R298Lfs*7|1|0.47|ENSG00000131446|chr5:180792055-180792079|GGGCGTATGCAGGCCCGCCCCTGCC/-|frameshift_variant	REV__MGAT1|p.R298Lfs*7|1|0.47|ENSG00000131446|chr5:180792055-180792079|GGGCGTATGCAGGCCCGCCCCTGCC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3074340820312	2	602.305864	1202.59717	0.67199	0.00040474	-1.5116	-0.00091045	-0.83961	-0.0005057	602.3053080565046	83.447	1.5636	83.447	82.651	84.215	0					159	53	5	0	0	0	0.29576	1	20608	20608		7.2892	0.56607	1	1695500	+		3947	9086	2678	2694	5261	5261					0.0039799478618078865
FFDTRYLLE	9	Unmodified	_FFDTRYLLE_					0	0	0			REV__MGAT1|p.R298Lfs*7|1|0.47|ENSG00000131446|chr5:180792055-180792079|GGGCGTATGCAGGCCCGCCCCTGCC/-|frameshift_variant	REV__MGAT1|p.R298Lfs*7|1|0.47|ENSG00000131446|chr5:180792055-180792079|GGGCGTATGCAGGCCCGCCCCTGCC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3062133789062	2	602.305864	1202.59717	0.45355	0.00027317	-1.1684	-0.00070372	-0.71483	-0.00043055	602.3055576931299	83.42	1.4036	83.441	82.764	84.168	0.021744					161	49	5	0	0	0	0.30005	1	20277	20277		6.7232	0.51738	1	1761800	+		3948	9086	2678	2694	5262	5262					0.0039799478618078865
FFEALEALL	9	Unmodified	_FFEALEALL_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7869873046875	2	526.786776	1051.559	0.01642	8.6499E-06	-1.6666	-0.00087795	-1.6502	-0.0008693	526.786488811304	105.75	0.19738	105.75	105.69	105.89	0					24	18	2	0	0	0	0.26684	2	27245	27245;27252		10.824	0	1	40577			3949	5656	2679	2695	5263;5264	5263					0.035281088715237274
FFEALEALL	9	Unmodified	_FFEALEALL_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	526.786776	1051.559	0.23736	0.00012504	0.40084	0.00021115	0.63819	0.00033619	526.7863898176386	105.69	0.061363	105.72	105.7	105.76	0.029739	-0.015489	0.0011098	NaN	10.824	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35757			3950	5656	2679	2695							0.035281088715237274
FFEVFTPVF	9	Unmodified	_FFEVFTPVF_					0	0	0		ENST00000475065.5_1_7:102963144-102967123:-|nuORF;ENST00000464253.5_1_7:102964930-102985008:-|nuORF;DNAJC2|p.D515Mfs*3|1|0.62|ENSG00000105821|chr7:103315858-103315858|T/-|frameshift_variant;nc|ENSG00000105821|Q99543-2|DNAJC2;ENSG00000105821|ENST00000379263|DNAJC2	ENST00000475065.5_1_7:102963144-102967123:-|nuORF	ENST00000475065.5_1_7:102963144-102967123:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3339233398438	2	566.789318	1131.56408	0.31245	0.00017709	-0.66235	-0.00037541	-0.3499	-0.00019832	566.7889874796766	101.06	0.17891	101.06	100.93	101.1	0					12	9	2	0	0	0	0.25644	1	25881	25881		3.9444	1.3669	1	32602			3951	292	2680	2696	5265	5265					0.003564127341405765
FFEVSPVSF	9	Unmodified	_FFEVSPVSF_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3028564453125	2	529.7633	1057.51205	0.64185	0.00034003	-0.10283	-5.4474E-05	0.53902	0.00028555	529.7626684424677	85.161	0.35404	85.161	84.985	85.339	0					18	11	2	0	0	0	0.13166	1	21008	21008		30.637	11.38	1	102520			3952	992	2681	2697	5266	5266					-0.01440750679626035
FFEVSPVSF	9	Unmodified	_FFEVSPVSF_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.302490234375	2	529.7633	1057.51205	0.69872	0.00037016	-0.28084	-0.00014878	0.41788	0.00022138	529.7628572016074	85.126	0.32784	85.149	85.007	85.335	0.023125					20	12	2	0	0	0	0.13166	1	20867	20867		37.974	18.717	1	86840			3953	992	2681	2697	5267	5267					-0.01440750679626035
FFFEDRSVD	9	Unmodified	_FFFEDRSVD_					0	0	0			REV__ENSG00000178342|ENST00000316249|KCNG2	REV__ENSG00000178342|ENST00000316249|KCNG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3009033203125	2	581.264196	1160.51384	0.83574	0.00048579	-3.817	-0.0022187	-2.9812	-0.0017329	581.2633351100784	70.756	0.13457	70.815	70.775	70.91	0.058578					5	4	2	0	0	0	0.25416	1	16496	16496		5.2307	1.2863	1	37281	+		3954	10448	2682	2698	5268	5268					-0.05999741661662483
FFFFAHFF	8	Unmodified	_FFFFAHFF_					0	0	0		ENST00000453574.1_1_X:100673300-100674112:+|nuORF	ENST00000453574.1_1_X:100673300-100674112:+|nuORF	ENST00000453574.1_1_X:100673300-100674112:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7875366210938	2	555.265813	1108.51707	0.56779	0.00031527	3.2899	0.0018267	3.8576	0.002142	555.2674789138821	88.134	0.53395	88.164	87.851	88.385	0.030037					28	18	2	0	0	0	0.3413	1	21788	21788		24.21	7.1234	1	152540			3955	6577	2683	2699	5269	5269					-0.032844020263382845
FFFFFFLL	8	Unmodified	_FFFFFFLL_					0	0	0		SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|48|1|anti-sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|43|1|anti-sense;chr12:56784133-56784853|342|14.69|0.25|5.86|+|0|TE_info:SVA_D,SVA_D_dup973,SVA,Retroposon,donor,-,56782661,56784133|None,HSD17B6|1;ENST00000393892.7_1_17:40125938-40126070:+|nuORF;ENST00000444986.1_1_6:28864339-28864980:+|nuORF	SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|48|1|anti-sense	SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|48|1|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8001098632812	2	564.301865	1126.58918	0.32084	0.00018105	0.13685	7.7225E-05	0.45769	0.00025828	564.3021033202717	105.65	0.22888	105.68	105.65	105.88	0.029739					29	23	2	0	0	0	0.3576	1	27048	27048		2.8892	0	1	87900			3956	149	2684	2700	5270	5270					0.030945123273795616
FFFFGFFF	8	Unmodified	_FFFFGFFF_					0	0	0		ENST00000460006.5_1_20:5177814-5177943:+|nuORF	ENST00000460006.5_1_20:5177814-5177943:+|nuORF	ENST00000460006.5_1_20:5177814-5177943:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2630615234375	2	553.262739	1104.51093	0.538	0.00029766	-0.22104	-0.0001223	0.31695	0.00017536	553.262576166853	96.623	0.50725	96.623	96.38	96.888	0					27	22	2	0	0	0	0.53257	1	24572	24572		6.3541	0	1	113190			3957	6600	2685	2701	5271	5271					-0.03714920257857557
FFFFLFFF	8	Unmodified	_FFFFLFFF_					0	0	0		ENST00000479872.5_1_1:165877514-165877814:+|nuORF;ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000479872.5_1_1:165877514-165877814:+|nuORF	ENST00000479872.5_1_1:165877514-165877814:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2938232421875	2	581.29404	1160.57353	0.17495	0.0001017	-0.98095	-0.00057022	-0.806	-0.00046852	581.29379654935	39.403	0.70873	39.403	39.186	39.894	0					37	25	3	0	0	0	0.53257	1	7120	7120		6.3541	0	1	60739			3958	6738	2686	2702	5272	5272					-0.00033774189682844735
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.5935974121094	3	503.593287	1507.75803	0.27083	0.00013639	-0.57686	-0.0002905	-0.30603	-0.00015411	503.5933347582612	59.694	2.0691	59.694	59.408	61.477	0					335	76	6	0	0	0	0.21273	3	13268	13225;13268;13313		28.234	9.5124	1	21707000	+		3959	11697	2687	2703	5273;5274;5275	5274					0.024463691702294454
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.59307861328125	3	503.593287	1507.75803	0.14723	7.4145E-05	-0.43453	-0.00021883	-0.2873	-0.00014468	503.5933715229508	59.541	2.1545	59.613	59.33	61.485	0.072338					328	79	6	0	0	0	0.21273	6	13052	13052;13097;13142;13186;13233;13585		28.234	9.5124	1	21176000	+		3960	11697	2687	2703	5276;5277;5278;5279;5280;5281	5276					0.024463691702294454
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.3054504394531	3	503.593287	1507.75803	0.4772	0.00024031	-0.14986	-7.5469E-05	0.32734	0.00016485	503.5929963741454	70.982	0.63234	71.041	70.91	71.542	0.058578					26	22	2	0	0	0	0.31072	1	16585	16585		4.7159	0	1	108610	+		3961	11697	2687	2703	5282	5282					0.024463691702294454
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	503.593287	1507.75803	0.27083	0.00013639	-0.57686	-0.0002905	-0.30603	-0.00015411	503.5933347582612	59.694	2.0691	59.694	59.408	61.477	0	0.040636	-0.00012969	NaN	28.234	335	76	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21707000	+		3962	11697	2687	2703							0.024463691702294454
FFFFLHPIF	9	Unmodified	_FFFFLHPIF_					0	0	0		ENST00000174618.4_1_17:2304187-2304379:-|nuORF	ENST00000174618.4_1_17:2304187-2304379:-|nuORF	ENST00000174618.4_1_17:2304187-2304379:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8336486816406	3	405.551422	1213.63244	0.23668	9.5985E-05	-0.017748	-7.1978E-06	0.21893	8.8787E-05	405.55142698246976	101.9	0.046478	101.94	101.91	101.95	0.042656					5	3	2	0	0	0	0.25787	1	25963	25963		2.9952	0	1	10855			3963	5780	2688	2704	5283	5283					0.03416702104641445
FFFFLYYI	8	Unmodified	_FFFFLYYI_					0	0	0		ENSG00000121314|ENST00000240615|TAS2R8	ENSG00000121314|ENST00000240615|TAS2R8	ENSG00000121314|ENST00000240615|TAS2R8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7578125	2	580.296779	1158.57901	0.49037	0.00028456	-2.2987	-0.0013339	-1.8083	-0.0010493	580.2974541441924	71.371	0.28747	71.371	71.269	71.556	0					11	9	2	0	0	0	0.35759	1	16830	16830		11.114	1.7313	1	71771			3964	2150	2689	2705	5284	5284					0.006059046021391623
FFFFPSSSF	9	Unmodified	_FFFFPSSSF_					0	0	0			REV__ENST00000530501.1_1_11:75672590-75694706:+|nuORF	REV__ENST00000530501.1_1_11:75672590-75694706:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3087768554688	2	556.758018	1111.50148	0.5534	0.00030811	0.59793	0.0003329	1.1513	0.00064101	556.7585985353943	82.519	0.41695	82.541	82.347	82.764	0.021744					21	14	2	0	0	0	0.24263	1	20131	20131		12.532	2.4576	1	62398	+		3965	12351	2690	2706	5285	5285					-0.04980733334036813
FFFFPSSSF	9	Unmodified	_FFFFPSSSF_					0	0	0			REV__ENST00000530501.1_1_11:75672590-75694706:+|nuORF	REV__ENST00000530501.1_1_11:75672590-75694706:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	556.758018	1111.50148	0.72157	0.00040174	-2.7776	-0.0015464	-2.056	-0.0011447	557.2586066321508	82.37	0.081856	82.37	82.313	82.395	0	-0.085341	-0.0036027	NaN	12.532	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28170	+		3966	12351	2690	2706							-0.04980733334036813
FFFGSDFEN	9	Unmodified	_FFFGSDFEN_					0	0	0		ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2328491210938	2	555.232364	1108.45018	0.42153	0.00023405	0.99922	0.0005548	1.4208	0.00078885	555.2327892855365	74.108	0.6545	74.108	73.949	74.604	0					43	24	2	0	0	0	0.23216	1	17711	17711		14.838	1.3304	1	607880			3967	2607	2691	2707	5286	5286					-0.09971102098757001
FFFGSDFEN	9	Unmodified	_FFFGSDFEN_					0	0	0		ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.3404541015625	2	555.232364	1108.45018	0.67795	0.00037642	0.60424	0.00033549	1.2822	0.00071191	555.2326138286855	74.133	0.7947	74.182	73.962	74.757	0.048546					56	28	4	0	0	0	0.25051	1	17457	17457		7.9102	0	1	336820			3968	2607	2691	2707	5287	5287					-0.09971102098757001
FFFGWMTL	8	Unmodified	_FFFGWMTL_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7528686523438	2	524.751682	1047.48881	0.23415	0.00012287	1.7364	0.0009112	1.9706	0.0010341	524.7524633005557	47.099	0.52108	47.182	46.91	47.431	0.083092					34	19	2	0	0	0	0.53423	1	9366	9366		5.2307	0.7018	1	121230			3969	2345	2692	2708	5288	5288					-0.033034679979209614
FFFHFFTL	8	Unmodified	_FFFHFFTL_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.26708984375	2	553.278921	1104.54329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.89	1	34.89	34.39	35.39	0								0	0	0	0.38822	1	5753	5753		2.5775	0.27475	1		+		3970	11187	2693	2709	5289	5289					-0.0048013285486376844
FFFIFDLF	8	Unmodified	_FFFIFDLF_					0	0	0			REV__nc|ENSG00000197503|Q96M19|LINC00477	REV__nc|ENSG00000197503|Q96M19|LINC00477	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2810668945312	2	548.281129	1094.54771	0.40135	0.00022005	-0.57614	-0.00031589	-0.17479	-9.5836E-05	548.2806827696527	105.15	0.23396	105.18	105.03	105.26	0.034004					44	25	3	0	0	0	0.3576	1	26872	26872		2.3027	0	1	189920	+		3971	12868	2694	2710	5290	5290					0.004213315680317464
FFFLFFFFF	9	Unmodified	_FFFLFFFFF_					0	0	0		ENST00000479872.5_1_1:165877514-165877814:+|nuORF;ENST00000380956.8_1_6:407613-407766:+|nuORF;ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000479872.5_1_1:165877514-165877814:+|nuORF	ENST00000479872.5_1_1:165877514-165877814:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.87939453125	3	436.887923	1307.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.438	1	30.513	30.013	31.013	0.075403								0	0	0	0.28946	1	4305	4305		1.1933	0	1				3972	6738	2695	2711	5291	5291					0.0004247039018991927
FFFLFGFV	8	Unmodified	_FFFLFGFV_					0	0	0			REV__ENST00000301454.8_1_19:6441086-6441584:-|nuORF	REV__ENST00000301454.8_1_19:6441086-6441584:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2703857421875	2	512.270564	1022.52658	0.045784	2.3454E-05	0.81917	0.00041964	0.86496	0.00044309	512.2709380464544	105.82	0.69343	105.82	105.56	106.25	0					94	67	2	0	0	0	0.54081	1	27309	27309		0.79363	0	1	60120	+		3973	11347	2696	2712	5292	5292					0.016213662592008404
FFFLQDEDY	9	Unmodified	_FFFLQDEDY_					0	0	0			REV__ENST00000477541.1_1_6:32918272-32920828:-|nuORF	REV__ENST00000477541.1_1_6:32918272-32920828:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5149841308594	3	408.513362	1222.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.747	1	75.747	75.247	76.247	0								0	0	0	0.28409	1	18162	18162		1.1933	0	1		+		3974	10938	2697	2713	5293	5293					-0.08410277238726849
FFFQDSKKI	9	Unmodified	_FFFQDSKKI_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7578125	2	580.310949	1158.60735	0.47909	0.00027802	0.34303	0.00019907	0.82212	0.00047709	580.3108930412835	71.313	0.46095	71.313	71.208	71.669	0					20	15	2	0	0	0	0.24929	1	16830	16830		9.3831	1.473	1	66478			3975	4158	2698	2714	5294	5294					0.03438602511437239
FFFTVLQI	8	Unmodified	_FFFTVLQI_					0	0	0		ENST00000357214.5_1_1:35649661-35649919:-|nuORF	ENST00000357214.5_1_1:35649661-35649919:-|nuORF	ENST00000357214.5_1_1:35649661-35649919:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7583312988281	2	507.786579	1013.5586	-0.15058	-7.6462E-05	2.1904	0.0011122	2.0398	0.0010358	507.78770689170574	27.31	0.24134	27.396	27.207	27.448	0.0867					22	16	2	0	0	0	0.3576	1	3377	3377		5.2307	0.90143	1	27316			3976	6130	2699	2715	5295	5295					0.05236733942331284
FFGKCTPL	8	Unmodified	_FFGKCTPL_					0	0	0			REV__ENST00000475542.1_1_10:121689169-121691647:+|nuORF	REV__ENST00000475542.1_1_10:121689169-121691647:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7372741699219	2	456.736031	911.45751	0.17896	8.1739E-05	2.1869	0.00099885	2.3659	0.0010806	456.73679973010604	51.421	0.67995	51.491	51.18	51.86	0.069878					46	25	3	0	0	0	0.37883	2	10602	10602;10647		28.487	1.6032	1	76139	+		3977	8597	2700	2716	5296;5297	5296					-0.0017604103202302213
FFHFKYCH	8	Unmodified	_FFHFKYCH_					0	0	0		ENST00000309982.9_2_8:104240677-104240884:+|nuORF	ENST00000309982.9_2_8:104240677-104240884:+|nuORF	ENST00000309982.9_2_8:104240677-104240884:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.74560546875	2	564.75783	1127.50111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.845	1	39.933	39.433	40.433	0.088562								0	0	0	0.38822	1	7120	7120		0.69038	0	1				3978	5997	2701	2717	5298	5298					-0.05754431534887772
FFIAGRYEF	9	Unmodified	_FFIAGRYEF_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7916870117188	2	575.290017	1148.56548	0.46273	0.00026621	-0.32559	-0.00018731	0.13714	7.8897E-05	575.2897132219575	67.512	0.66399	67.512	67.309	67.973	0					49	25	3	0	0	0	0.03472	2	15653	15645;15653		47.749	30.806	1	320230			3979	1430	2702	2718	5299;5300	5300					-0.0028595317710369272
FFIAGRYEF	9	Unmodified	_FFIAGRYEF_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.2890625	2	575.290017	1148.56548	0.67777	0.00038992	-0.63414	-0.00036481	0.043635	2.5103E-05	575.289428412537	67.501	0.7002	67.566	67.32	68.02	0.065071					49	23	3	0	0	0	0.081383	2	15478	15478;15528		36.506	24.866	1	421900			3980	1430	2702	2718	5301;5302	5301					-0.0028595317710369272
FFIDQANYF	9	Unmodified	_FFIDQANYF_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2735595703125	2	582.771657	1163.52876	0.79259	0.0004619	-0.29616	-0.00017259	0.49643	0.00028931	582.7713021664761	83.923	0.52344	83.923	83.658	84.182	0					39	17	3	0	0	0	0.0044564	2	20640	20640;20683		92.653	70.907	1	260810			3981	3779	2703	2719	5303;5304	5303					-0.046462497936772706
FFIDQANYF	9	Unmodified	_FFIDQANYF_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7718505859375	2	582.771657	1163.52876	0.58142	0.00033884	-0.4855	-0.00028294	0.09592	5.5899E-05	582.7712761643841	83.859	0.68012	83.881	83.615	84.295	0.021744					41	24	2	0	0	0	0.0040275	2	20472	20472;20534		103.35	74.867	1	241220			3982	3779	2703	2719	5305;5306	5305					-0.046462497936772706
FFIPPINLE	9	Unmodified	_FFIPPINLE_					0	0	0		nc|ENSG00000053108|Q6MZW2-3|FSTL4	nc|ENSG00000053108|Q6MZW2-3|FSTL4	nc|ENSG00000053108|Q6MZW2-3|FSTL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.8048095703125	2	545.302593	1088.59063	0.37409	0.00020399	0.49553	0.00027022	0.86962	0.00047421	545.8043827458732	101.17	0.40851	101.17	101	101.4	0					61	22	3	0	0	0	0.21398	1	25920	25920		16.942	2.104	1	221360			3983	7454	2704	2720	5307	5307					0.04988101625440322
FFIRFVPSRF	10	Unmodified	_FFIRFVPSRF_					0	0	0			REV__ENSG00000168229|ENST00000306051|PTGDR	REV__ENSG00000168229|ENST00000306051|PTGDR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.248291015625	3	439.248514	1314.72371	0.17171	7.5423E-05	-0.25562	-0.00011228	-0.08391	-3.6858E-05	439.24832445273506	57.775	1.0498	57.844	57.606	58.656	0.068371					83	38	4	0	0	0	0.43325	1	12572	12572		7.9454	1.3219	1	815450	+		3984	10146	2705	2721	5308	5308					0.07893965801986269
FFITALGVLN	10	Unmodified	_FFITALGVLN_					0	0	0			REV__CON__Q3SZ57	REV__CON__Q3SZ57	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.804443359375	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.891	1	34.967	34.467	35.467	0.076244								0	0	0	0.33905	1	5634	5634		1.3295	0.63916	1		+	+	3985	7848	2706	2722	5309	5309					0.07411790516835026
FFIYVCIYF	9	Unmodified	_FFIYVCIYF_					0	0	0			REV__ENST00000343638.9_1_17:42283996-42284245:-|nuORF	REV__ENST00000343638.9_1_17:42283996-42284245:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2168273925781	3	405.536673	1213.58819	0.79296	0.00032157	0.95502	0.0003873	1.748	0.00070887	405.5369949748987	65.037	0.16257	65.037	64.897	65.06	0					6	5	2	0	0	0	0.25787	1	14902	14902		2.9952	0.90923	1	42943	+		3986	11474	2707	2723	5310	5310					-0.010060701038355546
FFKKNFFW	8	Unmodified	_FFKKNFFW_					0	0	0			REV__ENST00000463783.1_1_3:196665854-196666076:-|nuORF	REV__ENST00000463783.1_1_3:196665854-196666076:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.3051147460938	2	582.30547	1162.59639	-0.45927	-0.00026744	0.10198	5.9385E-05	-0.35729	-0.00020805	582.3054529904906	41.848	0.62101	41.848	41.627	42.248	0					60	21	4	0	0	0	0.53817	3	7822	7822;7866;7914		2.5775	2.5775	1	723420	+		3987	11978	2708	2724	5311;5312;5313	5311					0.021592449277932246
FFKKNFFW	8	Unmodified	_FFKKNFFW_					0	0	0			REV__ENST00000463783.1_1_3:196665854-196666076:-|nuORF	REV__ENST00000463783.1_1_3:196665854-196666076:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	582.30547	1162.59639	-0.14281	-8.3162E-05	0.21771	0.00012677	0.074892	4.361E-05	582.3055301847455	41.753	0.58928	41.842	41.596	42.186	0.089767	-0.0029306	7.2931E-05	NaN	2.5775	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604210	+		3988	11978	2708	2724							0.021592449277932246
FFKNRGPFV	9	Unmodified	_FFKNRGPFV_					0	0	0			REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3087768554688	2	556.306001	1110.59745	0.56259	0.00031297	3.2986	0.001835	3.8611	0.002148	556.3078463635794	82.684	0.74026	82.706	82.424	83.164	0.021744					37	25	2	0	0	0	0.29105	1	20131	20131		7.9102	1.7044	1	165600	+		3989	10369	2709	2725	5314	5314					0.04657459296709021
FFKRKNFL	8	Unmodified	_FFKRKNFL_					0	0	0			REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7574462890625	2	550.324194	1098.63383	0.46268	0.00025463	-1.3372	-0.0007359	-0.87452	-0.00048127	550.3234498373519	67.811	0.32931	67.811	67.669	67.998	0					21	12	2	0	0	0	0.35713	1	15792	15792		14.582	4.5078	1	90799	+		3990	8492	2710	2726	5315	5315					0.08846336193414572
FFKSLLMLGF	10	Unmodified	_FFKSLLMLGF_					0	0	0			REV__ENST00000281171.8_2_12:15749701-15749842:+|nuORF	REV__ENST00000281171.8_2_12:15749701-15749842:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.8253784179688	2	601.835746	1201.65694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.891	1	90.891	90.391	91.391	0								0	0	0	0.33443	1	22775	22775		6.7232	0.51738	1		+		3991	11296	2711	2727	5316	5316					0.06417594195863785
FFLCWMPI	8	Unmodified	_FFLCWMPI_					0	0	0		ENSG00000163394|ENST00000295589|CCKAR	ENSG00000163394|ENST00000295589|CCKAR	ENSG00000163394|ENST00000295589|CCKAR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7560424804688	2	528.75591	1055.49727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.138	1	64.209	63.709	64.709	0.071014								0	0	0	0.38822	1	14478	14478		6.3541	0.14832	1				3992	3897	2712	2728	5317	5317					-0.028262373529742035
FFLDRDGFLF	10	Unmodified	_FFLDRDGFLF_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.8213500976562	2	638.821681	1275.62881	0.22042	0.00014081	0.15518	9.913E-05	0.3756	0.00023994	638.8219003172909	88.836	0.41724	88.836	88.726	89.143	0					28	16	2	0	0	0	0.32016	3	22189	22137;22189;22209		20.415	0	1	116270			3993	4751	2713	2729	5318;5319;5320	5319					0.002019875401401805
FFLDRDGFLF	10	Unmodified	_FFLDRDGFLF_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.8218383789062	2	638.821681	1275.62881	0.249	0.00015907	-0.39048	-0.00024945	-0.14148	-9.0379E-05	638.8213104213221	88.832	0.46815	88.864	88.729	89.198	0.032265					33	18	2	0	0	0	0.14333	2	21993	21993;22041		40.239	0	1	98773			3994	4751	2713	2729	5321;5322	5321					0.002019875401401805
FFLGSFFVL	9	Unmodified	_FFLGSFFVL_					0	0	0			REV__nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19	REV__nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7693481445312	2	538.794404	1075.57425	0.42578	0.00022941	-1.8201	-0.00098064	-1.3943	-0.00075123	538.7936129687055	87.598	0.46964	87.629	87.582	88.052	0.030045					22	16	3	0	0	0	0.25174	1	21603	21603		7.2892	0	1	77189	+		3995	9967	2714	2730	5323	5323					0.0394902045939034
FFLHHVPPRL	10	Unmodified	_FFLHHVPPRL_					0	0	0			REV__ENST00000499314.6_1_5:177054553-177058526:-|nuORF	REV__ENST00000499314.6_1_5:177054553-177058526:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5702819824219	3	421.576742	1261.7084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.959	1	58.027	57.527	58.527	0.068375								0	0	0	0.33855	1	12601	12601		1.9064	0.45126	1		+		3996	10201	2715	2731	5324	5324					0.08801099004790558
FFLLHFCL	8	Unmodified	_FFLLHFCL_					0	0	0			REV__ENST00000375370.9_1_13:114294732-114294870:+|nuORF	REV__ENST00000375370.9_1_13:114294732-114294870:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.2757568359375	2	520.275324	1038.53609	0.37509	0.00019515	0.82469	0.00042906	1.1998	0.00062421	520.2754417812586	76.22	0.41257	76.22	76.081	76.494	0					22	18	2	0	0	0	0.41567	1	18314	18314		24.21	4.771	1	905610	+		3997	11635	2716	2732	5325	5325					0.018368112730740904
FFLLHFCL	8	Unmodified	_FFLLHFCL_					0	0	0			REV__ENST00000375370.9_1_13:114294732-114294870:+|nuORF	REV__ENST00000375370.9_1_13:114294732-114294870:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	520.275324	1038.53609	0.32665	0.00016995	0.8346	0.00043422	1.1612	0.00060417	520.2754429260305	76.195	0.33295	76.234	76.108	76.441	0.03923	0.0073232	6.0667E-06	NaN	24.21	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347500	+		3998	11635	2716	2732							0.018368112730740904
FFLVGELKP	9	Unmodified	_FFLVGELKP_					0	0	0		ENST00000499247.2_1_17:48941386-48941458:-|nuORF	ENST00000499247.2_1_17:48941386-48941458:-|nuORF	ENST00000499247.2_1_17:48941386-48941458:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2883911132812	2	525.305136	1048.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.167	1	67.167	66.667	67.667	0								0	0	0	0.28527	1	15547	15547		2.0598	0.73022	1				3999	6856	2717	2733	5326	5326					0.07336405488103992
FFLVLLDPV	9	Unmodified	_FFLVLLDPV_					0	0	0		ENSG00000198205|ENST00000358697|ZXDA;ENSG00000198455|ENST00000374888|ZXDB	ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7898559570312	2	531.815336	1061.61612	0.68072	0.00036202	2.017	0.0010727	2.6977	0.0014347	531.8164059031296	84.899	0.77345	84.899	84.686	85.459	0					41	29	2	0	0	0	0.2446	1	21093	21093		7.2892	2.96	1	173770			4000	5352	2718	2734	5327	5327					0.08777576147872423
FFLVNSHK	8	Unmodified	_FFLVNSHK_					0	0	0			REV__tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	REV__tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.28179931640625	2	496.271627	990.528701	0.04733	2.3488E-05	0.048948	2.4291E-05	0.096277	4.778E-05	496.27149597741385	32.797	0.42449	32.871	32.692	33.117	0.07378					33	18	3	0	0	0	0.3576	1	5040	5040		1.8442	1.8442	1	29715	+		4001	13304	2719	2735	5328	5328					0.03305794996992972
FFLWSYRP	8	Unmodified	_FFLWSYRP_					0	0	0			REV__ENSG00000182557|ENST00000355530|SPNS3	REV__ENSG00000182557|ENST00000355530|SPNS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7638549804688	2	558.287277	1114.56	0.12868	7.1839E-05	1.0627	0.00059331	1.1914	0.00066515	558.287728262814	31.873	0.25985	31.947	31.829	32.089	0.07378					13	10	2	0	0	0	0.3576	1	4724	4724		0.69038	0	1	17979	+		4002	10567	2720	2736	5329	5329					0.007303680310769778
FFMWIFFI	8	Unmodified	_FFMWIFFI_					0	0	0		ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8429565429688	2	575.793349	1149.57215	0.45168	0.00026007	-0.5744	-0.00033074	-0.12273	-7.0665E-05	575.7940336301963	87.749	0.16798	87.749	87.687	87.855	0					6	5	2	0	0	0	0.35759	1	21810	21810		11.114	3.2043	1	29471			4003	4578	2721	2737	5330	5330					0.003342684499330062
FFPFFYSF	8	Unmodified	_FFPFFYSF_					0	0	0		ENST00000360315.7_1_19:19617063-19617249:+|nuORF	ENST00000360315.7_1_19:19617063-19617249:+|nuORF	ENST00000360315.7_1_19:19617063-19617249:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7574462890625	2	551.257654	1100.50076	0.49449	0.00027259	2.4386	0.0013443	2.9331	0.0016169	551.2590331360343	67.69	1.162	67.69	67.368	68.53	0					59	42	2	0	0	0	0.35759	1	15792	15792		11.114	0	1	161930			4004	6151	2722	2738	5331	5331					-0.045475279830952786
FFPNDEVMN	9	Unmodified	_FFPNDEVMN_					0	0	0		nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1	nc|ENSG00000117385|Q32P28-2|P3H1	nc|ENSG00000117385|Q32P28-2|P3H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7408447265625	2	556.739499	1111.46445	0.94288	0.00052494	1.3216	0.0007358	2.2645	0.0012607	556.7402418203824	81.569	0.66311	81.569	81.291	81.954	0					36	22	2	0	0	0	0.19398	1	19989	19989		19.257	1.122	1	141260			4005	1997	2723	2739	5332	5332					-0.0868277294212021
FFPNDEVMN	9	Unmodified	_FFPNDEVMN_					0	0	0		nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1	nc|ENSG00000117385|Q32P28-2|P3H1	nc|ENSG00000117385|Q32P28-2|P3H1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7410278320312	2	556.739499	1111.46445	0.57266	0.00031882	1.089	0.00060629	1.6617	0.00092511	556.7400929870478	82.996	0.83414	82.996	82.651	83.485	0					49	28	3	0	0	0	0.2418	1	20463	20463		13.906	3.0821	1	141740			4006	1997	2723	2739	5333	5333					-0.0868277294212021
FFPNDEVMN	9	Unmodified	_FFPNDEVMN_					0	0	0		nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1	nc|ENSG00000117385|Q32P28-2|P3H1	nc|ENSG00000117385|Q32P28-2|P3H1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	556.739499	1111.46445	0.69493	0.00038689	1.544	0.00085962	2.239	0.0012465	556.7403301509991	81.584	0.76107	81.606	81.283	82.044	0.021866	0.01831	0.00013073	NaN	19.257	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225570			4007	1997	2723	2739							-0.0868277294212021
FFPSLPGLTW	10	Unmodified	_FFPSLPGLTW_					0	0	0			REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF	REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.8060302734375	2	582.808042	1163.60153	0.86042	0.00050146	-1.6955	-0.00098816	-0.83509	-0.0004867	582.8054683545461	70.631	0.92262	70.691	70.425	71.348	0.060562					100	35	5	0	0	0	0.22666	1	16463	16463		30.637	0.79596	1	979830	+		4008	12597	2724	2740	5334	5334					0.02627503999747205
FFPSLPGLTW	10	Unmodified	_FFPSLPGLTW_					0	0	0			REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF	REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	582.808042	1163.60153	0.86042	0.00050146	-1.6955	-0.00098816	-0.83509	-0.0004867	582.8054683545461	70.631	0.92262	70.691	70.425	71.348	0.060562	-0.014614	-9.6009E-05	NaN	30.637	100	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	979830	+		4009	12597	2724	2740							0.02627503999747205
FFPSQTVDF	9	Unmodified	_FFPSQTVDF_					0	0	0			REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.8035888671875	2	544.258382	1086.50221	0.64804	0.0003527	1.9269	0.0010487	2.5749	0.0014014	544.2579089436853	80.9	0.71786	80.923	80.592	81.31	0.023605					45	24	3	0	0	0	0.25644	1	19692	19692		3.9444	2.1002	1	255480	+		4010	11063	2725	2741	5335	5335					-0.0375793868497567
FFRKALIM	8	Unmodified	_FFRKALIM_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.742431640625	2	513.301873	1024.58919	0.80007	0.00041068	2.4777	0.0012718	3.2777	0.0016825	513.8030115122842	81.729	0.17937	81.729	81.601	81.78	0					6	5	2	0	0	0	0.3576	1	20003	20003		5.7604	0	1	17757	+		4011	10264	2726	2742	5336	5336					0.07788189055713701
FFRLLLIAP	9	Unmodified	_FFRLLLIAP_					0	0	0			REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.752197265625	2	545.344595	1088.67464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.71	1	105.74	105.24	106.24	0.029739								0	0	0	0.29525	1	27054	27054		0	0	1		+		4012	9107	2727	2743	5337	5337					0.133846775130678
FFRLLLIAP	9	Unmodified	_FFRLLLIAP_					0	0	0			REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3449096679688	2	545.344595	1088.67464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.94	1	114.95	114.45	115.45	0.013092								0	0	0	0.29525	1	29226	29226		0	0	1		+		4013	9107	2727	2743	5338	5338					0.133846775130678
FFRPRLKIS	9	Unmodified	_FFRPRLKIS_					0	0	0			REV__ENST00000508686.1_3_5:72861812-72861932:+|nuORF	REV__ENST00000508686.1_3_5:72861812-72861932:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2901000976562	2	582.356025	1162.6975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.52	1	105.52	105.02	106.02	0								0	0	0	0.2927	1	27186	27186		0.52476	0	1		+		4014	12242	2728	2744	5339	5339					0.12265696630493039
FFSPMLGEF	9	Oxidation (M)	_FFSPM(Oxidation (M))LGEF_		FFSPM(1)LGEF		FFSPM(100)LGEF	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7496337890625	2	545.749336	1089.48412	0.78865	0.0004304	0.16902	9.224E-05	0.95766	0.00052264	545.749387011441	81.564	1.2742	81.564	81.235	82.509	0					121	44	4	0	0	0	0.003963	1	19976	19976		103.75	71.631	1	1064300			4015	4446	2729	2745	5340	5340		266			-0.057043969313554044
FFSPMLGEF	9	Oxidation (M)	_FFSPM(Oxidation (M))LGEF_		FFSPM(1)LGEF		FFSPM(110)LGEF	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7496337890625	2	545.749336	1089.48412	0.46396	0.00025321	0.52965	0.00028906	0.99361	0.00054226	545.7493139748304	83.023	1.6496	83.023	82.482	84.131	0					141	56	4	0	0	0	0.0032694	1	20406	20406		108	83.323	1	1159400			4016	4446	2729	2745	5341	5341		266			-0.057043969313554044
FFSPMLGEF	9	Oxidation (M)	_FFSPM(Oxidation (M))LGEF_		FFSPM(1)LGEF		FFSPM(140)LGEF	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7495727539062	2	545.749336	1089.48412	0.30196	0.00016479	0.74655	0.00040743	1.0485	0.00057222	545.7494063042079	82.959	1.9185	82.981	82.347	84.266	0.021744					173	68	4	0	0	0	1.7467E-05	1	20220	20220		141.83	56.47	1	1162900			4017	4446	2729	2745	5342	5342		266			-0.057043969313554044
FFSPMLGEF	9	Oxidation (M)	_FFSPM(Oxidation (M))LGEF_		FFSPM(1)LGEF		FFSPM(42)LGEF	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7495727539062	2	545.749336	1089.48412	0.45146	0.00024638	0.46882	0.00025586	0.92027	0.00050224	545.749575850663	81.584	1.1688	81.606	81.255	82.424	0.021866					114	42	4	0	0	0	0.10508	1	19821	19821		42.095	29.563	1	1260800			4018	4446	2729	2745	5343	5343		266			-0.057043969313554044
FFSSSLASPSL	11	Unmodified	_FFSSSLASPSL_					0	0	0		nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	nc|ENSG00000257923|P39880-5|CUX1	nc|ENSG00000257923|P39880-5|CUX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.77099609375	2	571.790047	1141.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.24	1	64.24	63.74	64.74	0								0	0	0	0.27893	1	14653	14653		17.113	2.2746	1				4019	5704	2730	2746	5344	5344					0.0004200203222808341
FFSTWQHEF	9	Unmodified	_FFSTWQHEF_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.1859130859375	3	410.185579	1227.53491	0.46076	0.000189	2.6284	0.0010781	3.0892	0.0012671	410.18636744838386	66.627	0.34172	66.693	66.558	66.9	0.065071					19	13	2	0	0	0	0.31136	1	15245	15245		2.9952	1.253	1	216800	+		4020	8290	2731	2747	5345	5345					-0.06975731562124565
FFSTWQHEF	9	Unmodified	_FFSTWQHEF_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	410.185579	1227.53491	0.96991	0.00039784	2.1232	0.00087092	3.0932	0.0012688	410.1863506051296	66.589	0.46259	66.589	66.408	66.871	0	-0.05176	-0.00019105	NaN	2.9952	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234170	+		4021	8290	2731	2747							-0.06975731562124565
FFSTWQHEF	9	Unmodified	_FFSTWQHEF_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	410.185579	1227.53491	0.46076	0.000189	2.6284	0.0010781	3.0892	0.0012671	410.18636744838386	66.627	0.34172	66.693	66.558	66.9	0.065071	0.05176	0.00043061	NaN	2.9952	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216800	+		4022	8290	2731	2747							-0.06975731562124565
FFSYATQTF	9	Unmodified	_FFSYATQTF_					0	0	0		ENSG00000164344|ENST00000264690|KLKB1	ENSG00000164344|ENST00000264690|KLKB1	ENSG00000164344|ENST00000264690|KLKB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.257080078125	2	556.258382	1110.50221	0.65292	0.00036319	-2.5168	-0.0014	-1.8639	-0.0010368	556.2570168718485	83.338	0.37753	83.338	83.173	83.55	0					22	12	2	0	0	0	0.23216	1	20508	20508		14.838	0	1	87877			4023	4004	2732	2748	5346	5346					-0.04861938685007772
FFSYRISAF	9	Unmodified	_FFSYRISAF_					0	0	0		ENST00000239231.6_1_5:167976533-167976707:-|nuORF	ENST00000239231.6_1_5:167976533-167976707:-|nuORF	ENST00000239231.6_1_5:167976533-167976707:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7902221679688	2	569.290017	1136.56548	-0.091639	-5.2169E-05	-1.9472	-0.0011085	-2.0389	-0.0011607	569.2883073172943	32.153	0.40386	32.226	32.052	32.456	0.07378					53	19	3	0	0	0	0.29576	1	4853	4853		7.2892	0.56607	1	53482			4024	5824	2733	2749	5347	5347					0.0026604682288962067
FFTHCFGHDI	10	Unmodified	_FFTHCFGHDI_					0	0	0		ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.5149230957031	3	408.514931	1222.52296	0.1762	7.1981E-05	0.21205	8.6625E-05	0.38825	0.00015861	408.51493559512807	75.7	0.38163	75.744	75.385	75.766	0.044037					36	15	3	0	0	0	0.45239	1	17963	17963		4.1895	2.1035	1	1931300			4025	5517	2734	2750	5348	5348					-0.07939671576968976
FFTSSGSGF	9	Unmodified	_FFTSSGSGF_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.6935119628906	2	468.708525	935.402498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.701	1	42.701	42.201	43.201	0								0	0	0	0.28527	1	8109	8109		2.0598	0	1				4026	3779	2735	2751	5349	5349					-0.06778756298933786
FFTTEKKQ	8	Unmodified	_FFTTEKKQ_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7750854492188	2	514.7742	1027.53385	0.5948	0.00030619	1.2112	0.00062351	1.806	0.0009297	514.7748314470933	97.984	0.79861	98.024	97.632	98.43	0.040855					64	41	2	0	0	0	0.52924	1	24732	24732		8.5933	1.304	1	164540	+		4027	10399	2736	2752	5350	5350					0.021180540689329064
FFTWIFGML	9	Unmodified	_FFTWIFGML_					0	0	0			REV__ENST00000269349.7_1_17:78109179-78109236:-|nuORF	REV__ENST00000269349.7_1_17:78109179-78109236:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.29345703125	2	581.293714	1160.57287	0.37289	0.00021676	-0.65799	-0.00038249	-0.2851	-0.00016573	581.2933997606709	39.27	0.45473	39.359	39.179	39.634	0.088566					37	19	3	0	0	0	0.25174	1	6941	6941		7.2892	0.93513	1	99346	+		4028	11270	2737	2753	5351	5351					-0.0009893690103126573
FFVFYSVHS	9	Unmodified	_FFVFYSVHS_					0	0	0		ENSG00000178201|ENST00000321039|VN1R1	ENSG00000178201|ENST00000321039|VN1R1	ENSG00000178201|ENST00000321039|VN1R1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2975463867188	2	566.776742	1131.53893	0.27528	0.00015602	-1.2269	-0.00069538	-0.95162	-0.00053936	567.2779087803234	76.636	0.81301	76.636	76.331	77.144	0					66	28	3	0	0	0	0.24635	1	18561	18561		10.824	1.4408	1	153620			4029	4736	2738	2754	5352	5352					-0.021576420684368713
FFVKIVGH	8	Unmodified	_FFVKIVGH_					0	0	0		ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7790222167969	2	473.779088	945.543623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.87	1	101.92	101.42	102.42	0.042656								0	0	0	0.38822	1	25956	25956		0.79363	0	1				4030	3859	2739	2755	5353	5353					0.06867286864996913
FFYKHCMHK	9	Unmodified	_FFYKHCMHK_					0	0	0		nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.274169921875	2	620.791346	1239.56814	0.41878	0.00025998	2.4933	0.0015478	2.9121	0.0018078	620.7927436017147	67.417	0.58545	67.482	67.32	67.905	0.065071					35	19	3	0	0	0	0.25979	1	15473	15473		11.64	0.14559	1	184620			4031	5604	2740	2756	5354	5354					-0.04206144315458005
FFYPLDFTF	9	Unmodified	_FFYPLDFTF_					0	0	0		ENSG00000117450|ENST00000319248|PRDX1;ENST00000450181.1_1_13:30870304-30870610:+|nuORF;nc|ENSG00000167815|P32119-2|PRDX2;ENST00000466174.5_1_19:12911560-12912565:-|nuORF;ENST00000477555.1_1_19:12910938-12912565:-|nuORF;ENSG00000167815|ENST00000301522|PRDX2;nc|ENSG00000165672|P30048-2|PRDX3;ENSG00000165672|ENST00000298510|PRDX3;ENSG00000123131|ENST00000379341|PRDX4	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7868041992188	2	598.786776	1195.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.55	1	106.55	106.05	107.05	0								0	0	0	0.25992	1	27480	27480		7.2892	2.0586	1				4032	2002	2741	2757	5355	5355					-0.030958911284869828
FFYVMISEL	9	Unmodified	_FFYVMISEL_					0	0	0			REV__ENSG00000173409|ENST00000310256|ARV1	REV__ENSG00000173409|ENST00000310256|ARV1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7884521484375	2	574.788461	1147.56237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103	1	103.04	102.54	103.54	0.040916								0	0	0	0.28527	1	26294	26294		2.0598	0	1		+		4033	10319	2742	2758	5356	5356					-0.005509643460982261
FFYYDQDQ	8	Unmodified	_FFYYDQDQ_					0	0	0			REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2305297851562	2	563.229822	1124.44509	0.50403	0.00028389	0.67018	0.00037746	1.1742	0.00066135	563.2301766900498	65.168	1.6534	65.237	64.658	66.312	0.068916					128	63	3	0	0	0	0.43379	2	14689	14689;14734		21.747	5.8995	1	830830	+		4034	8357	2743	2759	5357;5358	5357					-0.11215405961388569
FGAPCQCR	8	Unmodified	_FGAPCQCR_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.79925537109375	2	441.191465	880.368377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.825	1	93.825	93.325	94.325	0								0	0	0	0.38822	1	23667	23667		6.3541	1.1234	1		+		4035	9910	2744	2760	5359	5359					-0.07659199263196115
FGDRNQDIMNF	11	Unmodified	_FGDRNQDIMNF_					0	0	0			REV__ENST00000577510.5_1_18:3252320-3253446:+|nuORF	REV__ENST00000577510.5_1_18:3252320-3253446:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8695983886719	3	452.871555	1355.59283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.305	1	38.305	37.805	38.805	0								0	0	0	0.34068	1	6782	6782		0.50596	0	1		+		4036	8421	2745	2761	5360	5360					-0.07073837699044816
FGEYDEWSLV	10	Unmodified	_FGEYDEWSLV_					0	0	0			REV__ENSG00000167207|ENST00000647318|NOD2	REV__ENSG00000167207|ENST00000647318|NOD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7777709960938	2	622.777136	1243.53972	0.29032	0.0001808	0.096926	6.0363E-05	0.38724	0.00024117	622.7771486113645	54.42	0.58464	54.42	53.867	54.451	0					25	20	2	0	0	0	0.46554	1	11603	11603		1.8442	0	1	113940	+		4037	10108	2746	2762	5361	5361					-0.07230892210054662
FGFVNCHL	8	Unmodified	_FGFVNCHL_					0	0	0		ENST00000544806.1_1_11:71942502-71943381:+|nuORF;ENST00000537755.1_1_11:71942188-71943381:+|nuORF;nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1	ENST00000544806.1_1_11:71942502-71943381:+|nuORF	ENST00000544806.1_1_11:71942502-71943381:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.72369384765625	2	468.723455	935.432358	0.64927	0.00030433	-0.7616	-0.00035698	-0.11233	-5.2652E-05	468.72308350939454	81.82	0.68097	81.82	81.489	82.17	0					40	23	2	0	0	0	0.53771	1	20007	20007		2.8892	2.0956	1	136990			4038	7070	2747	2763	5362	5362					-0.03794095834609834
FGFVNCHL	8	Unmodified	_FGFVNCHL_					0	0	0		ENST00000544806.1_1_11:71942502-71943381:+|nuORF;ENST00000537755.1_1_11:71942188-71943381:+|nuORF;nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1	ENST00000544806.1_1_11:71942502-71943381:+|nuORF	ENST00000544806.1_1_11:71942502-71943381:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.723455	935.432358	0.17564	8.2325E-05	-0.44371	-0.00020798	-0.26808	-0.00012565	468.72324001239434	81.766	0.62988	81.788	81.503	82.133	0.021866	-0.016204	7.6461E-05	NaN	2.8892	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145050			4039	7070	2747	2763							-0.03794095834609834
FGHAANIRVF	10	Unmodified	_FGHAANIRVF_					0	0	0			REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2973022460938	2	566.306532	1130.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.11	1	107.14	106.64	107.64	0.025711								0	0	0	0.33395	1	27438	27438		7.2892	2.0586	1		+		4040	8855	2748	2764	5363	5363					0.03843673665596725
FGHAEVVSL	9	Unmodified	_FGHAEVVSL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.75347900390625	2	479.753267	957.491981	-0.070801	-3.3967E-05	-0.039377	-1.8891E-05	-0.11018	-5.2858E-05	479.75316236860095	49.51	0.56882	49.51	49.253	49.822	0					46	19	3	0	0	0	0.037705	2	10162	10162;10222		46.021	25.567	1	379770			4041	4541	2749	2765	5364;5365	5364					0.01153498380426754
FGHAEVVSL	9	Unmodified	_FGHAEVVSL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7535095214844	2	479.753267	957.491981	-0.11125	-5.3375E-05	0.48958	0.00023488	0.37833	0.0001815	479.75336488018837	49.446	0.58501	49.523	49.185	49.77	0.076603					45	20	4	0	0	0	0.074645	2	10002	10002;10058		37.974	11.09	1	315820			4042	4541	2749	2765	5366;5367	5366					0.01153498380426754
FGHNRGFLEF	10	Unmodified	_FGHNRGFLEF_					0	0	0		ENST00000452357.6_1_12:113355638-113355737:+|nuORF	ENST00000452357.6_1_12:113355638-113355737:+|nuORF	ENST00000452357.6_1_12:113355638-113355737:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.2686157226562	2	612.301447	1222.58834	0.26279	0.00016091	4.236	0.0025937	4.4988	0.0027546	612.8055131401347	76.344	0.21335	76.383	76.285	76.498	0.039238					12	7	2	0	0	0	0.31643	1	18179	18179		9.3831	1.2276	1	149510			4043	6568	2750	2766	5368	5368					-0.014049340596329785
FGIWMDLSRT	10	Unmodified	_FGIWMDLSRT_					0	0	0			REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.3045654296875	2	613.305341	1224.59613	-0.20509	-0.00012578	-1.2991	-0.00079677	-1.5042	-0.00092255	613.3045852189039	24.471	0.21629	24.567	24.444	24.66	0.096073					37	20	2	0	0	0	0.46899	1	2571	2571		1.1933	0	1	34133	+		4044	12362	2751	2767	5369	5369					-0.00718542854383486
FGIYGPEQVQ	10	Unmodified	_FGIYGPEQVQ_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2831420898438	2	569.282389	1136.55022	0.31517	0.00017942	0.42224	0.00024037	0.73741	0.00041979	569.282476688859	82.167	1.622	82.189	81.421	83.043	0.021866					105	58	2	0	0	0	0.30966	1	20104	20104		21.537	1.1224	1	221000			4045	1065	2752	2768	5370	5370					-0.012588647649408813
FGKHWVRF	8	Unmodified	_FGKHWVRF_					0	0	0		ENST00000565367.5_1_15:55647651-55647789:+|nuORF	ENST00000565367.5_1_15:55647651-55647789:+|nuORF	ENST00000565367.5_1_15:55647651-55647789:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.8291015625	2	538.793061	1075.57157	0.44425	0.00023936	-1.6678	-0.0008986	-1.2236	-0.00065924	538.7920667861002	79.014	0.58887	79.044	78.852	79.441	0.030159					38	20	2	0	0	0	0.35759	1	18957	18957		9.3474	9.3474	1	193050			4046	7177	2753	2769	5371	5371					0.03680609845082472
FGLGACHTF	9	Unmodified	_FGLGACHTF_					0	0	0			REV__ENST00000566982.1_1_16:75263411-75272069:-|nuORF	REV__ENST00000566982.1_1_16:75263411-75272069:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7207336425781	2	476.720913	951.427273	0.0036933	1.7607E-06	-0.24434	-0.00011648	-0.24064	-0.00011472	476.7207918151328	83.269	0.65763	83.291	82.931	83.589	0.021744					41	22	2	0	0	0	0.31496	2	20254	20254;20363		4.756	2.1785	1	179160	+		4047	12506	2754	2770	5372;5373	5372					-0.05038399697218665
FGLHHVNF	8	Unmodified	_FGLHHVNF_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7489318847656	2	485.748319	969.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.515	1	53.581	53.081	54.081	0.06543								0	0	0	0.38822	1	11247	11247		0.79363	0	1				4048	1925	2755	2771	5374	5374					-0.003876448342907679
FGLYGADIYHI	11	Unmodified	_FGLYGADIYHI_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8186645507812	2	634.819138	1267.62372	0.16626	0.00010555	0.41878	0.00026585	0.58504	0.0003714	634.8189166932111	95.941	0.39322	95.941	95.654	96.048	0					30	20	2	0	0	0	0.39569	1	24291	24291		5.2969	0.96765	1	61661	+		4049	8775	2756	2772	5375	5375					0.0006168367749523895
FGMDTWYIT	9	Unmodified	_FGMDTWYIT_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7747802734375	2	567.252243	1132.48993	0.23225	0.00013174	-1.0638	-0.00060347	-0.8316	-0.00047173	567.7538157640914	57.01	0.40958	57.01	56.857	57.267	0					20	14	2	0	0	0	0.2298	1	12429	12429		16.942	1.0951	1	199710	+		4050	10155	2757	2773	5376	5376					-0.07101298419706836
FGNRDYVIL	9	Unmodified	_FGNRDYVIL_					0	0	0			REV__ENSG00000103365|ENST00000309859|GGA2	REV__ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.79345703125	2	548.792924	1095.57129	0.30894	0.00016954	0.41995	0.00023047	0.72889	0.00040001	548.7930396525646	56.355	0.91142	56.355	56.134	57.046	0					80	33	4	0	0	0	0.074645	1	12224	12224		37.974	8.8924	1	1731000	+		4051	8475	2758	2774	5377	5377					0.027331453345595946
FGNRDYVIL	9	Unmodified	_FGNRDYVIL_					0	0	0			REV__ENSG00000103365|ENST00000309859|GGA2	REV__ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7932739257812	2	548.792924	1095.57129	0.27432	0.00015055	0.43892	0.00024088	0.71324	0.00039142	548.7931292170238	56.303	0.79144	56.37	56.093	56.884	0.066448					72	29	4	0	0	0	0.15282	1	12167	12167		24.021	1.2843	1	1594400	+		4052	8475	2758	2774	5378	5378					0.027331453345595946
FGPPVHGV	8	Unmodified	_FGPPVHGV_					0	0	0			REV__nc|ENSG00000130768|Q92485-2|SMPDL3B	REV__nc|ENSG00000130768|Q92485-2|SMPDL3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8983459472656	2	405.218863	808.423173	0.12622	5.1145E-05	0.10333	4.1873E-05	0.22955	9.3017E-05	405.2187818407059	52.66	0.24904	52.727	52.632	52.881	0.067173					15	9	2	0	0	0	0.3576	1	10961	10961		2.8892	0	1	33971	+		4053	9068	2759	2775	5379	5379					0.011298788713816066
FGQRRLLL	8	Unmodified	_FGQRRLLL_					0	0	0		ENSG00000176472|ENST00000314228|ZNF575	ENSG00000176472|ENST00000314228|ZNF575	ENSG00000176472|ENST00000314228|ZNF575	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8155822753906	2	501.813993	1001.61343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.54	1	104.58	104.08	105.08	0.034004								0	0	0	0.385	1	26729	26729		19.439	3.5918	1				4054	4664	2760	2776	5380	5380					0.11269165533622072
FGRNAREALP	10	Unmodified	_FGRNAREALP_					0	0	0			REV__ENSG00000138109|ENST00000260682|CYP2C9	REV__ENSG00000138109|ENST00000260682|CYP2C9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2982788085938	2	565.806897	1129.59924	0.30491	0.00017252	2.3286	0.0013175	2.6335	0.0014901	565.8080562479538	82.109	1.0198	82.131	81.57	82.59	0.021866					61	36	2	0	0	0	0.42901	2	19829	19829;19978		8.7454	0.83525	1	135530	+		4055	9303	2761	2777	5381;5382	5381					0.03962468314648504
FGRPLGHNW	9	Unmodified	_FGRPLGHNW_					0	0	0			REV__nc|ENSG00000197768|Q8N7X2-3|STPG3	REV__nc|ENSG00000197768|Q8N7X2-3|STPG3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.27685546875	2	542.277775	1082.541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.681	1	53.747	53.247	54.247	0.06543								0	0	0	0.25992	1	11298	11298		7.2892	1.0834	1		+		4056	12869	2762	2778	5383	5383					0.0030283146002147987
FGRSTPPPPPR	11	Unmodified	_FGRSTPPPPPR_					0	0	0			REV__ENST00000505364.1_1_4:1259420-1259672:+|nuORF	REV__ENST00000505364.1_1_4:1259420-1259672:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.89031982421875	3	403.556007	1207.64619	0.25233	0.00010183	-0.20835	-8.4082E-05	0.043978	1.7748E-05	403.890380415446	65.113	0.41942	65.182	65.061	65.48	0.068909					22	15	2	0	0	0	0.41448	1	14808	14808		1.0136	0.051299	1	100020	+		4057	12223	2763	2779	5384	5384					0.050673278657768606
FGRSTPPPPPR	11	Unmodified	_FGRSTPPPPPR_					0	0	0			REV__ENST00000505364.1_1_4:1259420-1259672:+|nuORF	REV__ENST00000505364.1_1_4:1259420-1259672:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	403.556007	1207.64619	0.81842	0.00033028	-0.62393	-0.00025179	0.19449	7.8486E-05	403.5557844258935	65.191	0.37137	65.191	64.973	65.344	0	0.0047575	-0.00028095	NaN	1.0136	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141190	+		4058	12223	2763	2779							0.050673278657768606
FGSAKSFDEF	10	Unmodified	_FGSAKSFDEF_					0	0	0			REV__ENSG00000109084|ENST00000226230|TMEM97	REV__ENSG00000109084|ENST00000226230|TMEM97	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2789306640625	2	567.758746	1133.50294	0.69897	0.00039685	-0.5252	-0.00029819	0.17377	9.8662E-05	567.7584594389152	66.67	0.73087	66.67	66.428	67.159	0					59	27	3	0	0	0	0.31456	1	15326	15326		14.838	4.0143	1	543500	+		4059	8631	2764	2780	5385	5385					-0.05847144035965357
FGSAKSFDEF	10	Unmodified	_FGSAKSFDEF_					0	0	0			REV__ENSG00000109084|ENST00000226230|TMEM97	REV__ENSG00000109084|ENST00000226230|TMEM97	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2791748046875	2	567.758746	1133.50294	0.6176	0.00035065	-0.81781	-0.00046432	-0.20021	-0.00011367	567.7583351452978	66.627	0.76147	66.693	66.502	67.264	0.065071					61	28	3	0	0	0	0.31456	1	15353	15353		14.838	3.198	1	677700	+		4060	8631	2764	2780	5386	5386					-0.05847144035965357
FGSHARSESR	10	Unmodified	_FGSHARSESR_					0	0	0			REV__ENSG00000143195|ENST00000271417|ILDR2	REV__ENSG00000143195|ENST00000271417|ILDR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.805908203125	2	567.275961	1132.53737	0.35191	0.00019963	0.091418	5.1859E-05	0.44333	0.00025149	567.2758272290021	60.097	1.5115	60.097	59.43	60.942	0					96	56	2	0	0	0	0.27035	1	13227	13227		29.437	0	1	260570	+		4061	9454	2765	2781	5387	5387					-0.02359883104486471
FGSHGRRAIF	10	Unmodified	_FGSHGRRAIF_					0	0	0		CPED1|p.L101F|1|0.28|ENSG00000106034|chr7:121015716-121015716|C/T|missense_variant	CPED1|p.L101F|1|0.28|ENSG00000106034|chr7:121015716-121015716|C/T|missense_variant	CPED1|p.L101F|1|0.28|ENSG00000106034|chr7:121015716-121015716|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.726318359375	2	574.309606	1146.60466	0.56969	0.00032718	2.1218	0.0012186	2.6915	0.0015458	574.3112514356246	65.019	0.2722	65.019	64.816	65.088	0					12	9	2	0	0	0	0.31595	1	14882	14882		11.495	4.7715	1	43521			4062	242	2766	2782	5388	5388					0.03722191897099947
FGSIPKLSHF	10	Unmodified	_FGSIPKLSHF_					0	0	0			REV__ENST00000470742.5_1_21:35091133-35094274:+|nuORF	REV__ENST00000470742.5_1_21:35091133-35094274:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.799072265625	2	566.811116	1131.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.62	1	106.62	106.12	107.12	0								0	0	0	0.33681	1	27499	27499		3.9444	1.3669	1		+	+	4063	7829	2767	2783	5389	5389					0.04714022231269155
FGSIVWLHYG	10	Unmodified	_FGSIVWLHYG_					0	0	0			REV__ENST00000276898.3_1_9:5713908-5748617:+|nuORF	REV__ENST00000276898.3_1_9:5713908-5748617:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3348388671875	2	589.803291	1177.59203	0.40904	0.00024125	-4.0103	-0.0023653	-3.6013	-0.002124	589.8010567382172	58.209	0.33987	58.279	58.136	58.476	0.070477					20	12	2	0	0	0	0.31219	1	12735	12735		17.113	2.2746	1	185050	+		4064	8585	2768	2784	5390	5390					0.010337357142361725
FGSPVPMTWL	10	Unmodified	_FGSPVPMTWL_					0	0	0			REV__ENST00000564907.5_1_16:57698417-57698486:+|nuORF	REV__ENST00000564907.5_1_16:57698417-57698486:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8317260742188	2	567.786253	1133.55795	0.44826	0.00025452	-3.2141	-0.0018249	-2.7659	-0.0015704	568.2879583351993	100.2	0.1739	100.24	100.15	100.32	0.042839					11	9	2	0	0	0	0.31616	1	25461	25461		10.074	5.3179	1	52431	+		4065	12495	2769	2785	5391	5391					-0.0034842876902985154
FGSVYRAAYE	10	Unmodified	_FGSVYRAAYE_					0	0	0		ENST00000479187.5_1_12:40692272-40758932:+|nuORF;ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant	ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENST00000479187.5_1_12:40692272-40758932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2587280273438	2	581.780013	1161.54547	0.60255	0.00035055	-0.50488	-0.00029373	0.097671	5.6823E-05	581.7798601808972	55.56	0.76942	55.56	55.293	56.063	0					70	26	3	0	0	0	0.38104	2	11981	11981;11996		13.906	0	1	1050600			4066	5180	2770	2786	5392;5393	5392					-0.028837489077204737
FGSWHGLDLT	10	Unmodified	_FGSWHGLDLT_					0	0	0		ENST00000526132.5_1_1:52552401-52552539:+|nuORF	ENST00000526132.5_1_1:52552401-52552539:+|nuORF	ENST00000526132.5_1_1:52552401-52552539:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2615356445312	2	566.774731	1131.53491	0.36895	0.00020911	2.5493	0.0014449	2.9182	0.001654	567.2781003164962	74.409	1.1571	74.457	73.933	75.09	0.048546					107	41	3	0	0	0	0.31496	1	17453	17453		13.906	0.86358	1	272160			4067	6987	2771	2787	5394	5394					-0.025597315621553207
FGTETVEAN	9	Unmodified	_FGTETVEAN_					0	0	0			REV__nc|ENSG00000168003|P08195-4|SLC3A2	REV__nc|ENSG00000168003|P08195-4|SLC3A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.74810791015625	2	484.221997	966.429441	0.012761	6.1794E-06	-0.079789	-3.8636E-05	-0.067028	-3.2456E-05	484.221950522463	38.639	0.36702	38.639	38.396	38.763	0					21	12	2	0	0	0	0.2446	1	6887	6887		11.64	0.81637	1	51621	+		4068	7777	2772	2788	5395	5395					-0.05511692478432906
FGTETVEAN	9	Unmodified	_FGTETVEAN_					0	0	0			REV__nc|ENSG00000168003|P08195-4|SLC3A2	REV__nc|ENSG00000168003|P08195-4|SLC3A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7480163574219	2	484.221997	966.429441	0.094072	4.5552E-05	-0.02408	-1.166E-05	0.069992	3.3892E-05	484.22201498542347	38.497	0.28275	38.584	38.435	38.717	0.08688					16	9	2	0	0	0	0.25174	1	6734	6734		7.2892	0	1	40768	+		4069	7777	2772	2788	5396	5396					-0.05511692478432906
FGTILYTGDF	10	Unmodified	_FGTILYTGDF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2784423828125	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.85	1	106.87	106.37	107.37	0.025711								0	0	0	0.33681	1	27364	27364		3.9444	1.3669	1				4070	2042	2773	2789	5397	5397					-0.016893829964601537
FGTLSEELYQ	10	Unmodified	_FGTLSEELYQ_					0	0	0			REV__ENST00000492337.5_1_3:181328352-181417456:+|nuORF	REV__ENST00000492337.5_1_3:181328352-181417456:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.7861938476562	2	593.784961	1185.55537	0.28452	0.00016895	0.93258	0.00055375	1.2171	0.0007227	593.7856783433624	86.32	1.0362	86.345	85.82	86.856	0.025169					71	41	2	0	0	0	0.44246	1	21278	21278		6.2058	0.47393	1	253910	+		4071	12156	2774	2790	5398	5398					-0.02998605692982892
FGTPFACT	8	Unmodified	_FGTPFACT_					0	0	0			REV__LRP4|p.C724F|1|0.12|ENSG00000134569|chr11:46889455-46889455|C/A|missense_variant	REV__LRP4|p.C724F|1|0.12|ENSG00000134569|chr11:46889455-46889455|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1884460449219	2	422.188914	842.363275	0.46565	0.00019659	-0.67823	-0.00028634	-0.21258	-8.9749E-05	422.1885206510296	95.845	0.70497	95.845	95.654	96.359	0					59	35	2	0	0	0	0.54097	1	24411	24411		0.69038	0	1	261080	+		4072	12724	2775	2791	5399	5399					-0.06421179854180536
FGVAFLFLFLN	11	Unmodified	_FGVAFLFLFLN_					0	0	0			REV__ENSG00000152254|ENST00000375363|G6PC2	REV__ENSG00000152254|ENST00000375363|G6PC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3607788085938	2	644.360442	1286.70633	0.40416	0.00026043	-0.34729	-0.00022378	0.056871	3.6646E-05	644.3601467445407	91.488	1.1365	91.488	91.269	92.405	0					83	42	3	0	0	0	0.40453	2	22947	22947;23050		3.2813	0.99853	1	575970	+		4073	9669	2776	2792	5400;5401	5400					0.07444625476318834
FGVMTKSWKG	10	Unmodified	_FGVMTKSWKG_					0	0	0			REV__nc|ENSG00000167699|Q9HC38-3|GLOD4	REV__nc|ENSG00000167699|Q9HC38-3|GLOD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7977294921875	2	570.797152	1139.57975	0.42127	0.00024046	1.1948	0.000682	1.6161	0.00092246	570.7976977002064	53.628	0.41787	53.694	53.555	53.973	0.06543					39	17	3	0	0	0	0.45945	1	11311	11311		2.9952	0.10602	1	262290	+		4074	10128	2777	2793	5402	5402					0.015543759795264123
FGYIYESPL	9	Unmodified	_FGYIYESPL_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7679443359375	2	544.768583	1087.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.232	1	90.232	89.732	90.732	0								0	0	0	0.23452	1	22574	22574		12.532	0	1		+		4075	8301	2778	2794	5403	5403					-0.017647680251684505
FHATTSEVSW	10	Unmodified	_FHATTSEVSW_					0	0	0		nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7694091796875	2	582.769645	1163.52474	0.45407	0.00026462	-0.66815	-0.00038938	-0.21408	-0.00012476	582.7692020633053	56.15	2.4349	56.15	55.782	58.217	0					304	86	5	0	0	0	0.16299	6	12198	12198;12239;12527;12644;12691;12797		37.974	24.021	1	17527000			4076	3586	2779	2795	5404;5405;5406;5407;5408;5409	5404					-0.05048339287372983
FHCWVESWM	9	Unmodified	_FHCWVESWM_					0	0	0		nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;ENSG00000198959|ENST00000361475|TGM2	nc|ENSG00000198959|P21980-2|TGM2	nc|ENSG00000198959|P21980-2|TGM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.4814758300781	3	408.837017	1223.48922	-0.29063	-0.00011882	-1.5763	-0.00064443	-1.8669	-0.00076325	408.8363245039253	29.613	0.40139	29.691	29.507	29.908	0.078287					34	22	3	0	0	0	0.25952	1	4011	4011		1.1933	0.23107	1	22163			4077	5437	2780	2796	5410	5410					-0.11358416340385702
FHCWVESWM	9	Unmodified	_FHCWVESWM_					0	0	0		nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;ENSG00000198959|ENST00000361475|TGM2	nc|ENSG00000198959|P21980-2|TGM2	nc|ENSG00000198959|P21980-2|TGM2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	408.837017	1223.48922	0.06669	2.7265E-05	-1.9601	-0.00080137	-1.8934	-0.0007741	408.83596460091627	29.658	0.26439	29.658	29.535	29.799	0	-0.016404	-0.00030693	NaN	1.1933	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23650			4078	5437	2780	2796							-0.11358416340385702
FHDENEKL	8	Unmodified	_FHDENEKL_					0	0	0			REV__nc|ENSG00000100376|Q9NWS6-2|FAM118A	REV__nc|ENSG00000100376|Q9NWS6-2|FAM118A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2537231445312	2	516.243264	1030.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.871	1	23.871	23.371	24.371	0								0	0	0	0.38822	1	2528	2528		6.7232	0.99131	1		+		4079	8392	2781	2797	5411	5411					-0.04204297350179331
FHDENEKL	8	Unmodified	_FHDENEKL_					0	0	0			REV__nc|ENSG00000100376|Q9NWS6-2|FAM118A	REV__nc|ENSG00000100376|Q9NWS6-2|FAM118A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2537841796875	2	516.243264	1030.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.845	1	23.944	23.444	24.444	0.099739								0	0	0	0.38822	1	2400	2400		4.3292	2.0265	1		+		4080	8392	2781	2797	5412	5412					-0.04204297350179331
FHEHFILI	8	Unmodified	_FHEHFILI_					0	0	0			REV__ENST00000526535.1_1_11:111234037-111249995:-|nuORF	REV__ENST00000526535.1_1_11:111234037-111249995:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7857666015625	2	528.287277	1054.56	0.33928	0.00017924	-0.48195	-0.00025461	-0.14267	-7.5373E-05	528.2873288160198	104.15	0.16362	104.19	104.16	104.33	0.03791					27	16	2	0	0	0	0.3576	1	26646	26646		6.3541	0	1	246590	+		4081	12330	2782	2798	5413	5413					0.03490368031111757
FHGPKLVPLL	10	Unmodified	_FHGPKLVPLL_					0	0	0			REV__nc|ENSG00000229236|Q9BZA0|TTTY10	REV__nc|ENSG00000229236|Q9BZA0|TTTY10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8474731445312	2	560.847502	1119.68045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.03	1	104.03	103.53	104.53	0								0	0	0	0.33443	1	26757	26757		6.7232	0	1		+		4082	12897	2783	2799	5414	5414					0.12539776024686944
FHGPKLVPLL	10	Unmodified	_FHGPKLVPLL_					0	0	0			REV__nc|ENSG00000229236|Q9BZA0|TTTY10	REV__nc|ENSG00000229236|Q9BZA0|TTTY10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8474731445312	2	560.847502	1119.68045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.05	1	104.05	103.55	104.55	0								0	0	0	0.33443	1	26761	26761		6.7232	0	1		+		4083	12897	2783	2799	5415	5415					0.12539776024686944
FHGSCKYL	8	Unmodified	_FHGSCKYL_					0	0	0		ENST00000531211.1_1_8:70772071-70772629:-|nuORF	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7286071777344	2	477.728738	953.442923	0.2922	0.00013959	-0.90015	-0.00043003	-0.60795	-0.00029043	477.72838377370294	93.368	0.39113	93.368	93.157	93.548	0					24	15	2	0	0	0	0.54081	1	23500	23500		0.79363	0	1	82664			4084	7028	2784	2800	5416	5416					-0.035661131801930424
FHHRTHTG	8	Unmodified	_FHHRTHTG_					0	0	0		nc|ENSG00000159885|Q9UK12|ZNF222;ENSG00000159885|ENST00000391960|ZNF222	nc|ENSG00000159885|Q9UK12|ZNF222	nc|ENSG00000159885|Q9UK12|ZNF222	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.21917724609375	2	496.744099	991.473646	0.087718	4.3573E-05	-2.3142	-0.0011496	-2.2265	-0.001106	496.7428860335825	23.694	0.25318	23.793	23.659	23.912	0.099739					27	22	2	0	0	0	0.3576	1	2336	2336		0.79363	0.19213	1	14629			4085	3744	2785	2801	5417	5417					-0.022431987509094142
FHISRLFYF	9	Unmodified	_FHISRLFYF_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.55364990234375	3	410.553715	1228.63931	0.23395	9.6049E-05	-0.20219	-8.3009E-05	0.03176	1.3039E-05	410.5535560977894	69.869	1.3284	69.929	69.641	70.969	0.060562					152	53	4	0	0	0	0.2779	2	16213	16213;16251		9.544	3.3521	1	1003200			4086	709	2786	2802	5418;5419	5418					0.034140149852191826
FHISRLFYF	9	Unmodified	_FHISRLFYF_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7930297851562	2	615.326934	1228.63931	0.018705	1.151E-05	-2.6962	-0.001659	-2.6775	-0.0016475	615.3246388824892	70	0.47081	70.06	69.723	70.194	0.060562					38	19	3	0	0	0	0.20294	1	16212	16212		24.991	17.081	1	210950			4087	709	2786	2802	5420	5420					0.034140149852191826
FHKLRYQLL	9	Unmodified	_FHKLRYQLL_					0	0	0		ENSG00000183318|ENST00000689094|SPDYE4;SPDYE4|p.P192L|1|0.26|ENSG00000183318|chr17:8753400-8753400|G/A|missense_variant	ENSG00000183318|ENST00000689094|SPDYE4	ENSG00000183318|ENST00000689094|SPDYE4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.3175659179688	2	609.361308	1216.70806	0.46213	0.0002816	-1.3073	-0.00079665	-0.84522	-0.00051504	609.3602898196858	94.499	0.46405	94.499	94.315	94.779	0					27	18	2	0	0	0	0.25579	1	23919	23919		4.3292	0.38484	1	63248			4088	4918	2787	2803	5421	5421					0.1083767928494126
FHLLLRHR	8	Unmodified	_FHLLLRHR_					0	0	0		ENST00000292566.3_1_7:102100189-102105179:-|nuORF	ENST00000292566.3_1_7:102100189-102105179:-|nuORF	ENST00000292566.3_1_7:102100189-102105179:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3309936523438	2	546.332885	1090.65122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.593	1	16.671	16.171	17.171	0.077806								0	0	0	0.38822	1	689	689		2.3027	0.24298	1				4089	5951	2788	2804	5422	5422					0.10951676519061948
FHLQPLMFLG	10	Unmodified	_FHLQPLMFLG_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000480329.5_1_20:44979343-44983832:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.328369140625	2	601.823169	1201.63179	0.48252	0.00029039	1.2899	0.00077629	1.7724	0.0010667	601.8217411221062	74.412	1.5809	74.412	74.03	75.611	0					246	59	6	0	0	0	0.40223	1	17935	17935		11.64	0	1	2674200			4090	889	2789	2805	5423	5423					0.03903539393286337
FHPVKRAC	8	Unmodified	_FHPVKRAC_					0	0	0			REV__ENSG00000196184|ENST00000423932|OR10J1	REV__ENSG00000196184|ENST00000423932|OR10J1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2581481933594	2	479.257997	956.501441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.46	1	119.46	118.96	119.96	0								0	0	0	0.38822	1	30094	30094		0.79363	0.19213	1		+		4091	10804	2790	2806	5424	5424					0.021449881849548547
FHPVKRAC	8	Unmodified	_FHPVKRAC_					0	0	0			REV__ENSG00000196184|ENST00000423932|OR10J1	REV__ENSG00000196184|ENST00000423932|OR10J1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2587890625	2	479.257997	956.501441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.561	1	26.648	26.148	27.148	0.0867								0	0	0	0.38822	1	3167	3167		0.79363	0.26887	1		+		4092	10804	2790	2806	5425	5425					0.021449881849548547
FHQYSSLWAL	10	Unmodified	_FHQYSSLWAL_					0	0	0			REV__ENST00000601417.1_1_19:53548107-53552264:+|nuORF	REV__ENST00000601417.1_1_19:53548107-53552264:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3113403320312	2	626.31148	1250.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.901	1	54.966	54.466	55.466	0.065128								0	0	0	0.33861	1	11671	11671		1.8442	0.36234	1		+		4093	12624	2791	2807	5426	5426					-0.00687183119657675
FHRMALAF	8	Unmodified	_FHRMALAF_					0	0	0			REV__ENST00000456101.6_1_6:109775937-109776843:-|nuORF	REV__ENST00000456101.6_1_6:109775937-109776843:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.77032470703125	2	496.760372	991.506192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.535	1	71.535	71.035	72.035	0								0	0	0	0.38822	1	16873	16873		2.8892	0	1		+		4094	11946	2792	2808	5427	5427					0.010098723277224053
FHVFLEYNQ	9	Unmodified	_FHVFLEYNQ_					0	0	0		ENST00000601728.1_1_19:23310047-23310578:-|nuORF;nc|ENSG00000129515|Q9UNH7-2|SNX6;ENST00000556162.5_1_14:35032330-35073396:-|nuORF;ENSG00000129515|ENST00000362031|SNX6	ENST00000601728.1_1_19:23310047-23310578:-|nuORF	ENST00000601728.1_1_19:23310047-23310578:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.7891235351562	2	598.790381	1195.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.568	1	53.633	53.133	54.133	0.06543								0	0	0	0.28409	1	11263	11263		2.3027	0.65011	1				4095	2431	2793	2809	5428	5428					-0.023751585280251675
FHVVHIDR	8	Unmodified	_FHVVHIDR_					0	0	0			REV__CON__Q28107	REV__CON__Q28107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7809753417969	2	511.780151	1021.54575	0.11424	5.8468E-05	-0.83887	-0.00042932	-0.72463	-0.00037085	511.7795747778308	34.957	0.37207	35.036	34.827	35.199	0.078827					24	14	2	0	0	0	0.54081	1	5681	5681		0.79363	0	1	34492	+	+	4096	7844	2794	2810	5429	5429					0.0358371560280375
FHWRYLVI	8	Unmodified	_FHWRYLVI_					0	0	0		nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370|SMARCA1	nc|ENSG00000102038|P28370|SMARCA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3156127929688	2	567.316369	1132.61818	0.28494	0.00016165	-0.95831	-0.00054367	-0.67338	-0.00038202	567.3157190320176	94.343	0.80896	94.381	94.101	94.91	0.038094					70	32	3	0	0	0	0.49441	1	23702	23702		13.508	0.46542	1	372400			4097	1290	2795	2811	5430	5430					0.057180496763749034
FHYFPFSLF	9	Unmodified	_FHYFPFSLF_					0	0	0		ENST00000523301.1_1_5:158533944-158534133:+|nuORF	ENST00000523301.1_1_5:158533944-158534133:+|nuORF	ENST00000523301.1_1_5:158533944-158534133:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.7935180664062	2	602.794935	1203.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.035	1	21.134	20.634	21.634	0.099499								0	0	0	0.29233	1	1654	1654		0.6015	0	1				4098	6973	2796	2812	5431	5431					-0.018327651717299887
FIALCLSNV	9	Unmodified	_FIALCLSNV_					0	0	0		ENST00000414296.2_1_7:29736649-29749689:+|nuORF;nc|ENSG00000291139|Q6ZN68-2|DPY19L2P2;nc|ENSG00000291139|Q6ZN68|DPY19L2P2;ENSG00000177990|ENST00000324472|DPY19L2	ENST00000414296.2_1_7:29736649-29749689:+|nuORF	ENST00000414296.2_1_7:29736649-29749689:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2688293457031	2	490.267696	978.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.649	1	78.649	78.149	79.149	0								0	0	0	0.19116	1	19051	19051		19.439	6.3965	1				4099	4728	2797	2813	5432	5432					0.03071899685221524
FIALCLSNV	9	Unmodified	_FIALCLSNV_					0	0	0		ENST00000414296.2_1_7:29736649-29749689:+|nuORF;nc|ENSG00000291139|Q6ZN68-2|DPY19L2P2;nc|ENSG00000291139|Q6ZN68|DPY19L2P2;ENSG00000177990|ENST00000324472|DPY19L2	ENST00000414296.2_1_7:29736649-29749689:+|nuORF	ENST00000414296.2_1_7:29736649-29749689:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2684631347656	2	490.267696	978.520839	0.31566	0.00015476	1.784	0.00087462	2.0996	0.0010294	490.2684756425856	78.733	0.96357	78.763	78.112	79.075	0.030159					49	33	2	0	0	0	0.24365	1	18874	18874		13.508	4.9146	1	429350			4100	4728	2797	2813	5433	5433					0.03071899685221524
FIEENDEVL	9	Unmodified	_FIEENDEVL_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;RPS23|p.K108Ifs*10|1|0.12|ENSG00000186468|chr5:82276218-82276219|-/ACTTTTTTTA|frameshift_variant;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2646484375	2	554.263862	1106.51317	0.48134	0.00026679	0.085779	4.7544E-05	0.56712	0.00031433	554.2635613975394	62.068	0.50053	62.068	61.921	62.421	0					33	19	2	0	0	0	0.14444	1	13991	13991		24.991	7.8781	1	170620			4101	5077	2798	2814	5434	5434					-0.03582581101386495
FIEENDEVL	9	Unmodified	_FIEENDEVL_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;RPS23|p.K108Ifs*10|1|0.12|ENSG00000186468|chr5:82276218-82276219|-/ACTTTTTTTA|frameshift_variant;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2635498046875	2	554.263862	1106.51317	0.53854	0.00029849	0.23237	0.00012879	0.7709	0.00042728	554.2636987300765	62.005	0.40072	62.079	61.935	62.336	0.073421					24	15	2	0	0	0	0.20358	1	13824	13824		18.146	5.1039	1	244640			4102	5077	2798	2814	5435	5435					-0.03582581101386495
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENSG00000154451|ENST00000370459|GBP5	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.8889465332031	3	405.888874	1214.64479	0.82703	0.00033568	-0.40547	-0.00016457	0.42156	0.00017111	405.8887283115041	54.407	0.88428	54.407	54.131	55.015	0					64	37	4	0	0	0	0.34403	2	11653	11653;11696		17.863	4.3445	1	425960			4103	3559	2799	2815	5436;5437	5436					0.046056937770117656
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENSG00000154451|ENST00000370459|GBP5	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8891296386719	3	405.888874	1214.64479	0.36924	0.00014987	0.20227	8.2098E-05	0.57151	0.00023197	405.8888468666442	54.374	0.60514	54.439	54.198	54.803	0.065128					56	29	3	0	0	0	0.30721	4	11482	11482;11526;11564;11582		21.799	8.2808	1	379460			4104	3559	2799	2815	5438;5439;5440;5441	5438					0.046056937770117656
FIFEEEPIF	9	Unmodified	_FIFEEEPIF_					0	0	0		ENSG00000125538|ENST00000263341|IL1B;ENST00000487639.1_1_2:113588742-113591137:-|nuORF	ENSG00000125538|ENST00000263341|IL1B	ENSG00000125538|ENST00000263341|IL1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134765625	2	585.789515	1169.56448	0.70251	0.00041152	0.84786	0.00049667	1.5504	0.00090819	585.7899969897106	91.852	0.56488	91.852	91.678	92.243	0					43	20	3	0	0	0	0.03509	1	23098	23098		64.236	35.749	1	271100			4105	2297	2800	2816	5442	5442					-0.01352212336678349
FIFEEEPIF	9	Unmodified	_FIFEEEPIF_					0	0	0		ENSG00000125538|ENST00000263341|IL1B;ENST00000487639.1_1_2:113588742-113591137:-|nuORF	ENSG00000125538|ENST00000263341|IL1B	ENSG00000125538|ENST00000263341|IL1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.789515	1169.56448	0.73106	0.00042825	1.025	0.00060041	1.756	0.0010287	585.7901540216698	91.81	0.67213	91.846	91.613	92.286	0.03653					51	23	3	0	0	0	0.090621	1	22898	22898		46.021	27.886	1	255460			4106	2297	2800	2816	5443	5443					-0.01352212336678349
FIFIFHSW	8	Unmodified	_FIFIFHSW_					0	0	0		nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2820434570312	2	548.78437	1095.55419	0.68413	0.00037544	0.2466	0.00013533	0.93074	0.00051077	548.7847039254684	54.608	0.2218	54.673	54.582	54.803	0.065128					16	10	2	0	0	0	0.3576	1	11588	11588		8.5933	0	1	130340			4107	7642	2801	2817	5444	5444					0.010232695194417829
FIFIHKKK	8	Unmodified	_FIFIHKKK_					0	0	0			REV__ENST00000592022.1_1_19:20328009-20328081:-|nuORF	REV__ENST00000592022.1_1_19:20328009-20328081:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8368530273438	2	530.836937	1059.65932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.75	1	114.76	114.26	115.26	0.013336								0	0	0	0.38822	1	29187	29187		0.79363	0	1		+		4108	12586	2802	2818	5445	5445					0.13187810715839987
FIFYWNLFF	9	Unmodified	_FIFYWNLFF_					0	0	0			REV__ENST00000316448.9_1_19:13054757-13054979:+|nuORF	REV__ENST00000316448.9_1_19:13054757-13054979:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.8853454589844	3	432.886582	1295.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.371	1	67.436	66.936	67.936	0.065071								0	0	0	0.26958	1	15455	15455		5.2969	0.24936	1		+		4109	11383	2803	2819	5446	5446					0.0019238089644204592
FIGYPDESLK	10	Unmodified	_FIGYPDESLK_					0	0	0			REV__ENSG00000105671|ENST00000247003|DDX49	REV__ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8136596679688	2	584.797872	1167.58119	0.6444	0.00037685	-0.45851	-0.00026813	0.18589	0.00010871	584.7975184040096	82.635	0.62561	82.657	82.475	83.1	0.021751					46	21	3	0	0	0	0.40987	1	20128	20128		10.824	1.4765	1	343350	+		4110	8552	2804	2820	5447	5447					0.0041028854927844804
FIHEVAKGVMI	11	Unmodified	_FIHEVAKGVMI_					0	0	0			REV__ENSG00000204271|ENST00000374919|SPIN3	REV__ENSG00000204271|ENST00000374919|SPIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3482055664062	2	622.347009	1242.67946	-0.050456	-3.1401E-05	0.91922	0.00057207	0.86876	0.00054067	622.3473921778954	89.889	2.3544	89.923	88.979	91.333	0.034058					155	92	3	0	0	0	0.3917	1	22427	22427		6.2058	2.6093	1	410760	+		4111	10940	2805	2821	5448	5448					0.06783193593491887
FIHWISEYPG	10	Unmodified	_FIHWISEYPG_					0	0	0		ENST00000471706.1_1_1:145457217-145470350:-|nuORF	ENST00000471706.1_1_1:145457217-145470350:-|nuORF	ENST00000471706.1_1_1:145457217-145470350:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8049926757812	2	624.806031	1247.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.477	1	93.514	93.014	94.014	0.037369								0	0	0	0.33877	1	23402	23402		1.6526	0.17072	1				4112	6675	2806	2822	5449	5449					-0.016385854939471756
FIKHFFIRFV	10	Unmodified	_FIKHFFIRFV_					0	0	0			REV__ENSG00000168229|ENST00000306051|PTGDR	REV__ENSG00000168229|ENST00000306051|PTGDR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.9324951171875	3	451.932526	1352.77575	0.23871	0.00010788	0.19066	8.6167E-05	0.42938	0.00019405	451.93252911380705	94.082	2.0559	94.12	93.42	95.476	0.038094					254	89	4	0	0	0	0.47119	1	23943	23943		0.77653	0.77653	1	1244100	+		4113	10146	2807	2823	5450	5450					0.11347129215710083
FIKRTGIQEM	10	Unmodified	_FIKRTGIQEM_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.5575256347656	3	408.225269	1221.65398	-0.16118	-6.5796E-05	1.5067	0.00061506	1.3455	0.00054926	408.22577001355654	40.856	0.50945	40.856	40.593	41.103	0					26	17	2	0	0	0	0.31794	1	7519	7519		1.7423	0	1	23306			4114	998	2808	2824	5451	5451					0.05201719071055777
FILAYTYTA	9	Unmodified	_FILAYTYTA_					0	0	0		ENST00000265990.10_1_10:93726429-93740242:+|nuORF	ENST00000265990.10_1_10:93726429-93740242:+|nuORF	ENST00000265990.10_1_10:93726429-93740242:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7938232421875	2	531.778951	1061.54335	0.62488	0.0003323	1.9719	0.0010486	2.5967	0.0013809	531.778676153772	93.084	1.2824	93.084	92.487	93.77	0					200	49	6	0	0	0	0.24365	1	23371	23371		13.508	3.3245	1	3282600			4115	5902	2809	2825	5452	5452					0.015038223544706852
FILEPLFFA	9	Unmodified	_FILEPLFFA_					0	0	0			REV__ENSG00000144063|ENST00000272462|MALL	REV__ENSG00000144063|ENST00000272462|MALL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7874755859375	2	548.807511	1095.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.927	1	52.992	52.492	53.492	0.06543								0	0	0	0.25361	1	11067	11067		8.5933	0.68312	1		+		4116	9488	2810	2826	5453	5453					0.05649289630855492
FILIPKKRS	9	Unmodified	_FILIPKKRS_					0	0	0			REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3607788085938	2	551.360776	1100.707	0.41905	0.00023105	0.39943	0.00022023	0.81848	0.00045128	551.3609797425818	109.32	0.39521	109.34	109.25	109.65	0.019402					64	43	2	0	0	0	0.33704	1	28033	28033		1.8442	1.1539	1	1030800	+		4117	10603	2811	2827	5454	5454					0.160674649160228
FILLGGDLF	9	Unmodified	_FILLGGDLF_					0	0	0		ENST00000541157.5_1_11:94212014-94225979:-|nuORF;ENST00000536144.1_1_11:94216977-94225979:-|nuORF;nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	ENST00000541157.5_1_11:94212014-94225979:-|nuORF	ENST00000541157.5_1_11:94212014-94225979:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.78363037109375	2	497.784036	993.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.714	1	87.714	87.214	88.214	0								0	0	0	0.19992	1	21814	21814		18.135	0	1				4118	475	2812	2828	5455	5455					0.05648430079713762
FILLIFILE	9	Unmodified	_FILLIFILE_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8397827148438	2	560.854461	1119.69437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.912	1	50.912	50.412	51.412	0								0	0	0	0.21527	1	10590	10590		15.847	4.2069	1				4119	4179	2813	2829	5456	5456					0.1393100873315234
FILPRIRLI	9	Unmodified	_FILPRIRLI_					0	0	0			REV__ENST00000383811.7_1_3:9975768-9975897:+|nuORF	REV__ENST00000383811.7_1_3:9975768-9975897:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8841552734375	2	570.884419	1139.75428	0.11536	6.5856E-05	0.42789	0.00024427	0.54324	0.00031013	570.8844822610308	72.636	0.86755	72.692	72.43	73.298	0.055939					83	29	4	0	0	0	0.31136	1	17191	17191		5.2307	0.47466	1	905400	+		4120	11681	2814	2830	5457	5457					0.1899974418702186
FILVGFSDW	9	Unmodified	_FILVGFSDW_					0	0	0		ENSG00000174339|ENST00000307832|OR2Y1	ENSG00000174339|ENST00000307832|OR2Y1	ENSG00000174339|ENST00000307832|OR2Y1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.259033203125	2	542.279118	1082.54368	0.4592	0.00024902	-2.0524	-0.001113	-1.5932	-0.00086396	542.2780122029446	53.095	0.51657	53.161	52.932	53.448	0.06543					54	24	3	0	0	0	0.24263	1	11060	11060		12.532	3.9383	1	285490			4121	4577	2815	2831	5458	5458					0.005712420743293478
FILVGPLCL	9	Unmodified	_FILVGPLCL_					0	0	0		ENST00000479887.1_1_7:143947766-143948387:-|nuORF;ENSG00000221938|ENST00000641068|OR2A14;ENSG00000221858|ENST00000641592|OR2A12;ENSG00000221836|ENST00000641693|OR2A5	ENST00000479887.1_1_7:143947766-143948387:-|nuORF	ENST00000479887.1_1_7:143947766-143948387:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7906188964844	2	487.790807	973.56706	0.22787	0.00011115	-0.28298	-0.00013804	-0.055112	-2.6883E-05	487.7905731542238	91.968	0.48058	92.005	91.774	92.254	0.03653					24	16	2	0	0	0	0.33356	1	22935	22935		2.3027	2.3027	1	111890			4122	5587	2816	2832	5459	5459					0.07921964587285402
FIPIIGGMWEL	11	Unmodified	_FIPIIGGMWEL_					0	0	0			REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D	REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.846435546875	2	638.343935	1274.67332	0.47526	0.00030338	1.275	0.00081391	1.7503	0.0011173	638.3445992829562	84.639	0.20531	84.662	84.584	84.79	0.023125					21	13	2	0	0	0	0.30798	1	20717	20717		17.113	4.0704	1	374540	+		4123	12886	2817	2833	5460	5460					0.04696675361992675
FIPIIGGMWEL	11	Unmodified	_FIPIIGGMWEL_					0	0	0			REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D	REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.846435546875	2	638.343935	1274.67332	0.47526	0.00030338	1.275	0.00081391	1.7503	0.0011173	638.3445992829562	84.639	0.20531	84.662	84.584	84.79	0.023125					21	13	2	0	0	0	0.30659	1	20717	20717		17.113	4.0704	1	374540	+		4124	12886	2817	2833	5461	5461					0.04696675361992675
FIPKDNQNF	9	Unmodified	_FIPKDNQNF_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7952270507812	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.704	1	87.704	87.204	88.204	0								0	0	0	0.19984	1	21811	21811		18.146	0.011366	1				4125	1916	2818	2834	5462	5462					-0.005354450451250159
FIPMWCLFF	9	Unmodified	_FIPMWCLFF_					0	0	0			REV__ENSG00000163394|ENST00000295589|CCKAR	REV__ENSG00000163394|ENST00000295589|CCKAR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.28955078125	2	602.290117	1202.56568	0.67615	0.00040724	-0.29129	-0.00017544	0.38486	0.0002318	602.2895378438675	98.715	0.47775	98.715	98.448	98.926	0					63	26	3	0	0	0	0.23437	2	25101	25101;25188		14.582	2.9414	1	339990	+		4126	9938	2819	2835	5463;5464	5463					-0.027499927731469143
FIPMWCLFF	9	Unmodified	_FIPMWCLFF_					0	0	0			REV__ENSG00000163394|ENST00000295589|CCKAR	REV__ENSG00000163394|ENST00000295589|CCKAR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2893676757812	2	602.290117	1202.56568	0.69502	0.0004186	-0.59999	-0.00036137	0.09503	5.7236E-05	602.2894263378333	98.659	0.55153	98.701	98.482	99.034	0.041931					54	33	2	0	0	0	0.18003	2	24967	24967;25009		20.871	3.7583	1	347940	+		4127	9938	2819	2835	5465;5466	5465					-0.027499927731469143
FIPMWCLFF	9	Unmodified	_FIPMWCLFF_					0	0	0			REV__ENSG00000163394|ENST00000295589|CCKAR	REV__ENSG00000163394|ENST00000295589|CCKAR	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	602.290117	1202.56568	0.69502	0.0004186	-0.59999	-0.00036137	0.09503	5.7236E-05	602.2894263378333	98.659	0.55153	98.701	98.482	99.034	0.041931	-0.0071876	-0.00017598	NaN	20.871	54	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347940	+		4128	9938	2819	2835							-0.027499927731469143
FIPREAPLP	9	Unmodified	_FIPREAPLP_					0	0	0			REV__ENSG00000106789|ENST00000375077|CORO2A	REV__ENSG00000106789|ENST00000375077|CORO2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.7682495117188	2	520.300384	1038.58622	0.33015	0.00017178	-1.0113	-0.00052616	-0.68112	-0.00035439	520.3000942638279	62.553	0.2952	62.626	62.534	62.83	0.072701					11	9	2	0	0	0	0.25416	1	13987	13987		5.2307	0.47466	1	48888	+		4129	8583	2820	2836	5467	5467					0.06846637202556849
FIPSEPGLAF	10	Unmodified	_FIPSEPGLAF_					0	0	0		ENST00000433094.1_1_20:46994536-46995317:+|nuORF	ENST00000433094.1_1_20:46994536-46995317:+|nuORF	ENST00000433094.1_1_20:46994536-46995317:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.295654296875	2	539.2844	1076.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.168	1	87.168	86.668	87.668	0								0	0	0	0.33092	1	21647	21647		10.824	1.4408	1				4130	6494	2821	2837	5468	5468					0.01903224728744135
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7504272460938	2	550.292756	1098.57096	0.38914	0.00021414	0.13528	7.4442E-05	0.52442	0.00028858	550.2927036786363	61.603	1.3041	61.603	61.418	62.722	0					110	60	2	0	0	0	0.0058522	1	13832	13832		78.728	50.555	1	2414600			4131	2538	2822	2838	5469	5469					0.025617256147143053
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.750732421875	2	550.292756	1098.57096	0.40919	0.00022518	0.20981	0.00011546	0.61901	0.00034063	550.2927257454998	61.542	1.3641	61.615	61.268	62.632	0.073418					108	64	3	0	0	0	0.0084898	1	13677	13677		86.332	54.215	1	1696200			4132	2538	2822	2838	5470	5470					0.025617256147143053
FIQNAQICEL	10	Unmodified	_FIQNAQICEL_					0	0	0			REV__MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant	REV__MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.299072265625	2	589.797349	1177.58014	0.15189	8.9585E-05	0.038546	2.2734E-05	0.19044	0.00011232	589.7970982732282	33.017	0.684	33.091	32.862	33.546	0.074322					42	26	2	0	0	0	0.46083	1	5085	5085		2.7352	0.89096	1	26474	+		4133	8384	2823	2839	5471	5471					-0.0015424909126977582
FIQQSFFTLI	10	Unmodified	_FIQQSFFTLI_					0	0	0			REV__ENST00000478436.1_1_3:145795570-145803239:-|nuORF	REV__ENST00000478436.1_1_3:145795570-145803239:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8370361328125	2	622.339707	1242.66486	0.36828	0.00022919	-2.4191	-0.0015055	-2.0508	-0.0012763	622.3381618324916	84.268	0.33703	84.268	83.962	84.299	0					25	14	2	0	0	0	0.31754	1	20754	20754		10.824	0.75	1	927180	+		4134	12067	2824	2840	5472	5472					0.053234447170098065
FIQRSLSSF	9	Unmodified	_FIQRSLSSF_					0	0	0		ENST00000291574.8_1_21:45451998-45457698:+|nuORF	ENST00000291574.8_1_21:45451998-45457698:+|nuORF	ENST00000291574.8_1_21:45451998-45457698:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.781982421875	2	542.792924	1083.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.58	1	86.58	86.08	87.08	0								0	0	0	0.15603	1	21466	21466		24.674	5.2349	1				4135	5948	2825	2841	5473	5473					0.032851453345756454
FIRDKFLL	8	Unmodified	_FIRDKFLL_					0	0	0			REV__ENSG00000137674|ENST00000260228|MMP20	REV__ENSG00000137674|ENST00000260228|MMP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.3187255859375	2	526.318577	1050.6226	0.27345	0.00014392	0.32836	0.00017282	0.60181	0.00031674	526.3187479745419	77.492	1.0558	77.492	77.338	78.394	0					95	38	4	0	0	0	0.28175	1	18768	18768		36.044	1.6425	1	1820800	+		4136	9282	2826	2842	5474	5474					0.09931514099275773
FIRDKFLL	8	Unmodified	_FIRDKFLL_					0	0	0			REV__ENSG00000137674|ENST00000260228|MMP20	REV__ENSG00000137674|ENST00000260228|MMP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3189086914062	2	526.318577	1050.6226	0.3404	0.00017916	0.23443	0.00012339	0.57484	0.00030255	526.3187124940257	77.422	1.1539	77.456	77.326	78.48	0.034485					86	41	4	0	0	0	0.37883	2	18492	18492;18595		28.487	0.85804	1	1457200	+		4137	9282	2826	2842	5475;5476	5475					0.09931514099275773
FIRGTTHELF	10	Unmodified	_FIRGTTHELF_					0	0	0			REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1	REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5574645996094	3	407.552262	1219.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.145	1	40.234	39.734	40.734	0.088562								0	0	0	0.30845	1	7211	7211		16.566	2.951	1		+		4138	10023	2827	2843	5477	5477					0.03392505771648757
FIRPCTKIKSC	11	Unmodified	_FIRPCTKIKSC_					0	0	0		ENST00000297857.3_1_8:124261964-124262105:-|nuORF	ENST00000297857.3_1_8:124261964-124262105:-|nuORF	ENST00000297857.3_1_8:124261964-124262105:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.35400390625	2	648.351768	1294.68898	-0.40025	-0.00025951	3.861	0.0025033	3.4608	0.0022438	648.3543045924488	40.993	0.46352	41.083	40.902	41.365	0.089645					28	16	2	0	0	0	0.40693	1	7466	7466		2.7352	0.89096	1	42122			4139	5963	2828	2844	5478	5478					0.0534263860736246
FITDMPELR	9	Unmodified	_FITDMPELR_					0	0	0			REV__ENST00000476499.1_1_10:24918849-25010828:-|nuORF	REV__ENST00000476499.1_1_10:24918849-25010828:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3214111328125	2	561.286617	1120.55868	0.24877	0.00013963	3.4817	0.0019543	3.7305	0.0020939	561.2882799704784	73.084	1.1611	73.137	72.718	73.88	0.052567					79	43	5	0	0	0	0.13858	1	17349	17349		19.362	5.4559	1	613290	+		4140	8601	2829	2845	5479	5479					0.003223658800152407
FITEFRSCYP	10	Unmodified	_FITEFRSCYP_					0	0	0		ENST00000470742.5_1_21:35091133-35094274:+|nuORF	ENST00000470742.5_1_21:35091133-35094274:+|nuORF	ENST00000470742.5_1_21:35091133-35094274:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7979125976562	2	631.797349	1261.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.795	1	21.795	21.295	22.295	0								0	0	0	0.33984	1	1950	1950		0.40072	0	1				4141	6662	2830	2846	5480	5480					-0.04018249091268444
FITLTTIGF	9	Unmodified	_FITLTTIGF_					0	0	0		ENSG00000124249|ENST00000372861|KCNK15;ENSG00000169427|ENST00000520439|KCNK9;ENSG00000171303|ENST00000302909|KCNK3	ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.77947998046875	2	506.789318	1011.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.366	1	99.409	98.909	99.909	0.042839								0	0	0	0.22979	1	25196	25196		13.508	1.8676	1				4142	2250	2831	2847	5481	5481					0.058764127341419226
FIVEETLPL	9	Unmodified	_FIVEETLPL_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2705078125	2	530.799883	1059.58521	0.3585	0.00019029	-0.30987	-0.00016448	0.048622	2.5808E-05	530.7996019658518	83.771	0.53783	83.792	83.499	84.037	0.021744					32	18	2	0	0	0	0.2446	1	20521	20521		11.64	0	1	243520			4143	5318	2832	2848	5482	5482					0.0578037804300493
FIVEETLPL	9	Unmodified	_FIVEETLPL_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	530.799883	1059.58521	0.61378	0.00032579	-0.61087	-0.00032425	0.0029048	1.5419E-06	530.7994351724104	83.791	0.53458	83.791	83.485	84.02	0	-0.00051965	-0.0001779	NaN	11.64	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219410			4144	5318	2832	2848							0.0578037804300493
FIVSKVMFF	9	Unmodified	_FIVSKVMFF_					0	0	0			REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7368774414062	2	559.309364	1116.60417	0.31508	0.00017623	3.0496	0.0017056	3.3646	0.0018819	559.3109469037014	71.956	0.4836	72.012	71.812	72.296	0.055939					24	16	2	0	0	0	0.30005	1	16928	16928		6.7232	0.51738	1	159980	+		4145	10912	2833	2849	5483	5483					0.050536361330614454
FIWEYDPTL	9	Unmodified	_FIWEYDPTL_					0	0	0		ENSG00000134533|ENST00000256953|RERG	ENSG00000134533|ENST00000256953|RERG	ENSG00000134533|ENST00000256953|RERG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3063354492188	2	592.28714	1182.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.543	1	87.543	87.043	88.043	0								0	0	0	0.18435	1	21762	21762		20.454	5.6154	1				4146	2676	2834	2850	5484	5484					-0.024250964794418906
FIWEYDPTL	9	Unmodified	_FIWEYDPTL_					0	0	0		ENSG00000134533|ENST00000256953|RERG	ENSG00000134533|ENST00000256953|RERG	ENSG00000134533|ENST00000256953|RERG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3052978515625	2	592.28714	1182.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.573	1	87.603	87.103	88.103	0.030037								0	0	0	0.18435	1	21607	21607		20.454	7.4112	1				4147	2676	2834	2850	5485	5485					-0.024250964794418906
FIYAYTIW	8	Unmodified	_FIYAYTIW_					0	0	0			REV__tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	REV__tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7744750976562	2	538.776211	1075.53787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.247	1	84.247	83.747	84.747	0								0	0	0	0.38413	1	20756	20756		20.871	2.7249	1		+		4148	13126	2835	2851	5486	5486					0.003121435626553648
FIYDNTEF	8	Unmodified	_FIYDNTEF_					0	0	0		ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2543334960938	2	524.73474	1047.45493	0.50536	0.00026518	-2.4754	-0.0012989	-1.97	-0.0010337	524.7334267197967	70.432	0.4315	70.432	70.243	70.675	0					24	15	2	0	0	0	0.35713	1	16585	16585		14.582	1.0738	1	129430			4149	6	2836	2852	5487	5487					-0.06690217955997468
FIYERQLL	8	Unmodified	_FIYERQLL_					0	0	0		ENST00000467530.5_1_1:85960282-85960465:-|nuORF	ENST00000467530.5_1_1:85960282-85960465:-|nuORF	ENST00000467530.5_1_1:85960282-85960465:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.3078002929688	2	541.305667	1080.59678	0.53613	0.00029021	-0.095478	-5.1683E-05	0.44065	0.00023853	541.3055780590109	63.475	0.81094	63.546	63.188	63.999	0.071018					64	30	3	0	0	0	0.41706	1	14375	14375		24.021	5.8742	1	811870			4150	6646	2837	2853	5488	5488					0.059706198569983826
FIYFSEEI	8	Unmodified	_FIYFSEEI_					0	0	0			REV__ENST00000471158.1_1_3:53137921-53154019:-|nuORF	REV__ENST00000471158.1_1_3:53137921-53154019:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2543334960938	2	524.255308	1046.49606	0.50646	0.00026551	-0.58114	-0.00030466	-0.074679	-3.9151E-05	524.2547938467854	70.474	0.35696	70.474	70.351	70.708	0					18	12	2	0	0	0	0.51887	1	16585	16585		10.183	0	1	84616	+		4151	9965	2838	2854	5489	5489					-0.025324569165150024
FIYLEIVLF	9	Unmodified	_FIYLEIVLF_					0	0	0		ENST00000205636.3_1_3:32525040-32525106:-|nuORF	ENST00000205636.3_1_3:32525040-32525106:-|nuORF	ENST00000205636.3_1_3:32525040-32525106:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.8356323242188	2	578.836268	1155.65798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.67	1	81.67	81.17	82.17	0								0	0	0	0.24995	1	19972	19972		9.3474	0	1				4152	5788	2839	2855	5490	5490					0.08638131836391949
FKDGGKEMVAL	11	Unmodified	_FKDGGKEMVAL_					0	0	0		tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1	tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1	tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8128051757812	2	597.812999	1193.61144	0.13276	7.9366E-05	0.14288	8.5415E-05	0.27564	0.00016478	597.8131245506268	35.887	4.0088	35.887	35.228	39.237	0					418	149	5	0	0	0	0.35693	1	5963	5963		11.495	2.1116	1	905780			4153	13558	2840	2856	5491	5491					0.02238323942833631
FKDKFNYIE	9	Unmodified	_FKDKFNYIE_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3065795898438	2	602.305864	1202.59717	0.67199	0.00040474	-1.5116	-0.00091045	-0.83961	-0.0005057	602.3053080565046	83.447	1.5636	83.447	82.651	84.215	0					159	53	5	0	0	0	0.24767	1	20431	20431		13.042	0.80181	1	1695500	+		4154	13284	2841	2857	5492	5492					0.0039799478618078865
FKETWLFYNG	10	Unmodified	_FKETWLFYNG_					0	0	0			REV__ENSG00000100351|ENST00000344138|GRAP2	REV__ENSG00000100351|ENST00000344138|GRAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.8829345703125	3	435.548518	1303.62372	-0.058524	-2.549E-05	0.31891	0.0001389	0.26039	0.00011341	435.5484217174024	24.27	3.9898	24.27	23.481	27.471	0					496	316	2	0	0	0	0.44253	2	2650	2650;2687		6.1918	1.1443	1	214980	+		4155	8387	2842	2858	5493;5494	5493					-0.015943163224847012
FKGRWFWRVR	10	Unmodified	_FKGRWFWRVR_					0	0	0		ENSG00000102996|ENST00000219271|MMP15;MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	ENSG00000102996|ENST00000219271|MMP15	ENSG00000102996|ENST00000219271|MMP15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2731628417969	3	479.938674	1436.79419	-0.05449	-2.6152E-05	0.915	0.00043914	0.86051	0.00041299	479.93918132950785	14.619	0.40314	14.687	14.571	14.974	0.067592					59	53	2	0	0	0	0.47446	1	366	366		0.15932	0.01943	1	18529			4156	1342	2843	2859	5495	5495					0.09326683910262545
FKIHNWLM	8	Unmodified	_FKIHNWLM_					0	0	0		ENST00000331173.5_1_10:53458777-53458861:-|nuORF	ENST00000331173.5_1_10:53458777-53458861:-|nuORF	ENST00000331173.5_1_10:53458777-53458861:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7880859375	2	544.78913	1087.56371	-0.35647	-0.0001942	-1.1849	-0.00064552	-1.5414	-0.00083972	544.7886766785464	17.472	0.13657	17.472	17.391	17.527	0					25	16	2	0	0	0	0.54097	1	934	934		0.69038	0	1	12034			4157	6055	2844	2860	5496	5496					0.023427145332789223
FKIWKTHF	8	Unmodified	_FKIWKTHF_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B;ENST00000558615.5_1_15:49867204-49907386:-|nuORF;nc|ENSG00000166262|Q96M60-2|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.83203125	2	553.810919	1105.60729	-0.011455	-6.3437E-06	4.08	0.0022595	4.0685	0.0022532	554.3141233372203	44.19	0.49203	44.19	43.978	44.47	0					36	16	3	0	0	0	0.53345	1	8617	8617		5.7604	0.028577	1	91669			4158	4147	2845	2861	5497	5497					0.058706473020720296
FKKYKDKTKKF	11	Unmodified	_FKKYKDKTKKF_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.6257629394531	3	487.62565	1459.85512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.47	1	61.543	61.043	62.043	0.073421								0	0	0	0.34083	1	13667	13667		0.45452	0	1				4159	13583	2846	2862	5498	5498					0.14358731379206802
FKMGSKMT	8	Unmodified	_FKMGSKMT_					0	0	0			REV__ENST00000257829.7_1_11:34165002-34165035:+|nuORF	REV__ENST00000257829.7_1_11:34165002-34165035:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2325439453125	2	465.232799	928.451044	-0.26831	-0.00012483	-0.0082892	-3.8564E-06	-0.2766	-0.00012868	465.2327237680034	21.495	1.3998	21.495	21.341	22.74	0					319	126	4	0	0	0	0.35759	1	1851	1851		11.64	2.2929	1	525210	+		4160	11218	2847	2863	5499	5499					-0.016043022550547903
FKNFGGHR	8	Unmodified	_FKNFGGHR_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7484130859375	2	481.751393	961.488233	-0.49435	-0.00023815	-2.0313	-0.00097859	-2.5257	-0.0012167	481.74883429767686	23.959	0.33915	23.959	23.818	24.158	0					68	30	3	0	0	0	0.53494	1	2577	2577		4.756	0.42677	1	51458			4161	5738	2848	2864	5500	5500					0.005948733972445552
FKNSSDVDI	9	Unmodified	_FKNSSDVDI_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7678833007812	2	512.750921	1023.48729	0.29547	0.0001515	-0.056397	-2.8918E-05	0.23908	0.00012259	512.7508623028996	50.185	1.0207	50.259	49.979	51	0.07312					99	36	5	0	0	0	0.18398	1	10322	10322		20.415	4.2654	1	2812600			4162	3916	2849	2865	5501	5501					-0.023514305530056845
FKQIVYNGF	9	Unmodified	_FKQIVYNGF_					0	0	0			REV__nc|ENSG00000055917|Q8TB72-2|PUM2	REV__nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7896118164062	2	558.297842	1114.58113	0.61603	0.00034393	-0.28544	-0.00015936	0.33059	0.00018457	558.2975490813583	63.78	0.51578	63.78	63.563	64.078	0					28	18	2	0	0	0	0.092418	1	14554	14554		34.102	5.0209	1	305130	+		4163	8070	2850	2866	5502	5502					0.028423333399359763
FKRWVPSL	8	Unmodified	_FKRWVPSL_					0	0	0		nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370|SMARCA1	nc|ENSG00000102038|P28370|SMARCA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3106079101562	2	516.803094	1031.59164	0.60736	0.00031389	-1.6507	-0.00085311	-1.0434	-0.00053922	516.8021897078938	97.509	0.42656	97.509	97.258	97.684	0					21	17	2	0	0	0	0.3576	1	24835	24835		2.3027	0.4585	1	67403			4164	1290	2851	2867	5503	5503					0.07710360785040393
FLACISADR	9	Unmodified	_FLACISADR_					0	0	0		ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7817687988281	2	498.252577	994.490601	0.41305	0.0002058	-2.2995	-0.0011457	-1.8864	-0.00093992	498.2510349451656	78.676	1.0947	78.706	78.346	79.441	0.030159					46	38	2	0	0	0	0.28587	1	18895	18895		8.5933	2.8329	1	128540			4165	4979	2852	2868	5504	5504					-0.006864589799761234
FLACLTLVL	9	Unmodified	_FLACLTLVL_					0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.79449462890625	2	496.796089	991.577625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.25	1	101.25	100.75	101.75	0								0	0	0	0.17567	1	25925	25925		21.747	0.87544	1		+		4166	9929	2853	2869	5505	5505					0.08149947241724931
FLAICLAVF	9	Unmodified	_FLAICLAVF_					0	0	0			REV__ENST00000576442.1_3_19:30462035-30462077:+|nuORF	REV__ENST00000576442.1_3_19:30462035-30462077:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.78155517578125	2	498.782982	995.55141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.663	1	78.663	78.163	79.163	0								0	0	0	0.22377	1	19055	19055		14.582	0	1		+		4167	12538	2854	2870	5506	5506					0.053456780702617834
FLAQEDPSL	9	Unmodified	_FLAQEDPSL_					0	0	0			REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.24664306640625	2	510.25584	1018.49713	0.1912	9.7562E-05	0.1843	9.4039E-05	0.3755	0.0001916	510.2558356073484	73.269	0.50139	73.322	73.008	73.51	0.052574					34	19	2	0	0	0	0.10833	1	17306	17306		30.637	1.555	1	808470	+		4168	7885	2855	2871	5507	5507					-0.0113824254760857
FLCFFLSSF	9	Unmodified	_FLCFFLSSF_					0	0	0		ENST00000309137.12_1_16:57219763-57219925:-|nuORF	ENST00000309137.12_1_16:57219763-57219925:-|nuORF	ENST00000309137.12_1_16:57219763-57219925:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7720947265625	2	555.770071	1109.52559	0.69698	0.00038736	1.9231	0.0010688	2.62	0.0014561	555.771213331955	92.291	0.57153	92.291	92.037	92.608	0					37	21	3	0	0	0	0.3354	1	23270	23270		2.0598	0.21551	1	127120			4169	5993	2856	2872	5508	5508					-0.02479216172037013
FLCFPPWR	8	Unmodified	_FLCFPPWR_					0	0	0		ENST00000376509.4_1_X:48776104-48776263:-|nuORF	ENST00000376509.4_1_X:48776104-48776263:-|nuORF	ENST00000376509.4_1_X:48776104-48776263:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.785400390625	2	533.270573	1064.52659	0.41757	0.00022268	2.1681	0.0011562	2.5857	0.0013789	533.271679867729	91.088	0.51733	91.088	90.94	91.458	0					18	17	2	0	0	0	0.3576	1	22848	22848		6.3541	6.3541	1	78802			4170	6244	2857	2873	5509	5509					-0.0030895701247573015
FLCFTSCSSHF	11	Unmodified	_FLCFTSCSSHF_					0	0	0		ENST00000476848.5_1_21:43792873-43802453:-|nuORF	ENST00000476848.5_1_21:43792873-43802453:-|nuORF	ENST00000476848.5_1_21:43792873-43802453:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.8490295410156	3	426.847581	1277.52091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.53	1	95.569	95.069	96.069	0.038872								0	0	0	0.3155	1	24029	24029		4.7159	0	1				4171	6718	2858	2874	5510	5510					-0.10674468377123958
FLCGTDDQASL	11	Unmodified	_FLCGTDDQASL_					0	0	0			REV__ENST00000479285.5_1_1:114437689-114438127:-|nuORF	REV__ENST00000479285.5_1_1:114437689-114438127:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8140869140625	2	585.260796	1168.50704	0.86356	0.00050541	3.3919	0.0019852	4.2555	0.0024906	585.2622958753922	79.771	0.42709	79.771	79.562	79.989	0					24	14	3	0	0	0	0.28998	1	19457	19457		22.736	5.794	1	153630	+		4172	9170	2859	2875	5511	5511					-0.07047422604546227
FLCYEHVCW	9	Unmodified	_FLCYEHVCW_					0	0	0			REV__ENST00000359943.7_1_7:120990385-120990445:-|nuORF	REV__ENST00000359943.7_1_7:120990385-120990445:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.2529907226562	2	600.254262	1198.49397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.955	1	86.955	86.455	87.455	0								0	0	0	0.28409	1	21581	21581		2.3027	0.65011	1		+		4173	11535	2860	2876	5512	5512					-0.09733532197651584
FLDAWLMLV	9	Unmodified	_FLDAWLMLV_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2989501953125	2	554.298996	1106.58344	0.73572	0.00040781	-0.96975	-0.00053753	-0.23403	-0.00012972	554.7999919937474	99.422	0.55497	99.465	99.141	99.696	0.042839					71	36	3	0	0	0	0.16036	1	25240	25240		23.148	6.2061	1	213570			4174	982	2861	2877	5513	5513					0.034410457533795125
FLDDTRFIL	9	Unmodified	_FLDDTRFIL_					0	0	0		ENST00000556777.1_1_14:22932002-22932101:-|nuORF	ENST00000556777.1_1_14:22932002-22932101:-|nuORF	ENST00000556777.1_1_14:22932002-22932101:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.3087158203125	2	570.308406	1138.60226	-0.0036049	-2.0559E-06	0.44689	0.00025487	0.44329	0.00025281	570.3092924792786	73.185	0.46452	73.185	72.909	73.373	0					22	15	3	0	0	0	0.14091	1	17394	17394		25.399	0	1	122740			4175	7131	2862	2878	5514	5514					0.03850298648808348
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.263916015625	2	511.263665	1020.51278	0.32121	0.00016422	0.14656	7.4933E-05	0.46778	0.00023916	511.26367356271106	77.081	0.81263	77.081	76.467	77.28	0					62	29	3	0	0	0	0.0016252	2	18550	18550;18600		118.07	10.881	1	635260			4176	5554	2863	2879	5515;5516	5515					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.26373291015625	2	511.263665	1020.51278	0.39242	0.00020063	-0.022337	-1.142E-05	0.37008	0.00018921	511.2635236646765	76.996	0.70744	77.031	76.521	77.229	0.034485					57	25	3	0	0	0	0.0068798	1	18415	18415		76.825	10.368	1	557450			4177	5554	2863	2879	5517	5517					0.003340439694284214
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(50)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2394409179688	2	528.239332	1054.46411	0.28488	0.00015049	0.069375	3.6647E-05	0.35426	0.00018713	528.2392483812998	59.668	0.6655	59.668	59.453	60.119	0					41	25	2	0	0	0	0.032194	1	13293	13293		49.554	28.017	1	263020			4178	4341	2864	2880	5518	5518		261			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(44)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2394409179688	2	528.239332	1054.46411	0.37019	0.00019555	0.43355	0.00022902	0.80375	0.00042457	528.2391942823482	62.402	0.96756	62.402	61.974	62.941	0					56	35	2	0	0	0	0.048027	1	14129	14129		43.772	26.659	1	180200			4179	4341	2864	2880	5519	5519		261			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(60)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2395629882812	2	528.239332	1054.46411	0.16146	8.529E-05	0.21558	0.00011388	0.37704	0.00019917	528.2393323495476	59.573	0.83538	59.645	59.427	60.262	0.072338					48	31	2	0	0	0	0.017478	2	13069	13069;13111		60.074	30.992	1	239000			4180	4341	2864	2880	5520;5521	5520		261			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(44)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2396850585938	2	528.239332	1054.46411	0.32194	0.00017006	0.64875	0.0003427	0.97069	0.00051276	528.2392126760859	62.149	1.0276	62.223	61.988	63.016	0.073421					59	36	2	0	0	0	0.048027	1	13958	13958		43.772	26.659	1	210710			4181	4341	2864	2880	5522	5522		261			-0.060941926619761944
FLDLSIIRF	9	Unmodified	_FLDLSIIRF_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7952270507812	2	562.329142	1122.64373	0.43748	0.00024601	0.046323	2.6049E-05	0.4838	0.00027205	562.3291277369358	87.607	0.49378	87.607	87.455	87.948	0					39	17	3	0	0	0	0.086078	1	21811	21811		43.982	14.141	1	366980			4182	5267	2865	2881	5523	5523					0.08731479408129417
FLDLSIIRF	9	Unmodified	_FLDLSIIRF_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.79541015625	2	562.329142	1122.64373	0.31346	0.00017627	0.18934	0.00010647	0.5028	0.00028274	562.3291464128906	87.603	0.537	87.633	87.428	87.965	0.030037					31	19	2	0	0	0	0.046885	1	21631	21631		63.961	18.261	1	390180			4183	5267	2865	2881	5524	5524					0.08731479408129417
FLDQFYEDF	9	Unmodified	_FLDQFYEDF_					0	0	0			REV__ENSG00000148690|ENST00000359204|FRA10AC1	REV__ENSG00000148690|ENST00000359204|FRA10AC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.3433227539062	2	612.266404	1222.51826	0.0035992	2.2036E-06	1.1481	0.00070293	1.1517	0.00070513	612.7682993515369	71.785	1.5817	71.785	71.001	72.582	0					109	54	3	0	0	0	0.2094	1	16770	16770		22.736	10.205	1	177930	+		4184	9594	2866	2882	5525	5525					-0.08410277238749586
FLDQKAGDEEE	11	Unmodified	_FLDQKAGDEEE_					0	0	0			REV__nc|ENSG00000110075|Q5H9R7-3|PPP6R3	REV__nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.3026123046875	3	427.526218	1279.55683	0.24195	0.00010344	2.9455	0.0012593	3.1874	0.0013627	427.527370860112	62.986	0.43325	63.059	62.934	63.367	0.072701					24	19	2	0	0	0	0.31062	1	14188	14188		2.2527	0.79761	1	211910	+		4185	8660	2867	2883	5526	5526					-0.07177016394871316
FLDRDLMTL	9	Unmodified	_FLDRDLMTL_					0	0	0		ENST00000592111.1_1_18:55240476-55253852:-|nuORF;ENST00000585878.1_1_18:55240476-55253852:-|nuORF;ENSG00000066926|ENST00000262093|FECH;nc|ENSG00000066926|P22830-2|FECH	ENST00000592111.1_1_18:55240476-55253852:-|nuORF	ENST00000592111.1_1_18:55240476-55253852:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2952880859375	2	562.294442	1122.57433	0.55963	0.00031468	0.79208	0.00044538	1.3517	0.00076006	562.294771734518	99.899	0.46661	99.942	99.872	100.34	0.042839					55	26	3	0	0	0	0.098463	1	25393	25393		32.786	5.902	1	167540			4186	705	2868	2884	5527	5527					0.017946523970749695
FLDTRDLH	8	Unmodified	_FLDTRDLH_					0	0	0		ENST00000456660.1_1_7:53930759-53931029:+|nuORF	ENST00000456660.1_1_7:53930759-53931029:+|nuORF	ENST00000456660.1_1_7:53930759-53931029:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2845458984375	2	508.761623	1015.50869	-0.057874	-2.9444E-05	-1.4852	-0.00075561	-1.5431	-0.00078505	508.7608285708433	72.544	0.40099	72.544	72.317	72.718	0					27	13	3	0	0	0	0.3576	1	17116	17116		5.2307	0.90143	1	157540			4187	6589	2869	2885	5528	5528					0.001559992663715093
FLEDHGLLVT	10	Unmodified	_FLEDHGLLVT_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3261108398438	2	572.305864	1142.59717	0.55072	0.00031518	1.4057	0.00080446	1.9564	0.0011196	572.3065793211744	97.546	0.59879	97.546	97.461	98.06	0					33	29	2	0	0	0	0.43972	1	24866	24866		6.7232	1.4925	1	64244			4188	3204	2870	2886	5529	5529					0.031579947861928304
FLEEREIAL	9	Unmodified	_FLEEREIAL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2951049804688	2	560.305864	1118.59717	0.47935	0.00026858	0.36435	0.00020415	0.8437	0.00047273	560.3059025475004	59.901	0.42477	59.901	59.758	60.183	0					29	14	3	0	0	0	0.19398	1	13331	13331		19.257	3.4098	1	176410			4189	925	2871	2887	5530	5530					0.04261994786179457
FLEEREIAL	9	Unmodified	_FLEEREIAL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2955322265625	2	560.305864	1118.59717	0.30947	0.0001734	0.57626	0.00032288	0.88574	0.00049628	560.3059048513545	59.825	0.50269	59.897	59.735	60.237	0.072342					30	18	3	0	0	0	0.15482	1	13181	13181		23.79	2.0431	1	140280			4190	925	2871	2887	5531	5531					0.04261994786179457
FLEEREIAL	9	Unmodified	_FLEEREIAL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	560.305864	1118.59717	0.47935	0.00026858	0.36435	0.00020415	0.8437	0.00047273	560.3059025475004	59.901	0.42477	59.901	59.758	60.183	0	0.0018527	-9.4514E-05	NaN	23.79	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176410			4191	925	2871	2887							0.04261994786179457
FLEGSNDAL	9	Unmodified	_FLEGSNDAL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2325744628906	2	483.232364	964.450176	0.016357	7.9041E-06	0.31228	0.0001509	0.32864	0.00015881	483.2324505891253	56.245	0.56341	56.245	56.007	56.57	0					38	20	3	0	0	0	0.16392	1	12192	12192		22.736	1.1993	1	560130			4192	382	2872	2888	5532	5532					-0.03347102098769028
FLEGSNDAL	9	Unmodified	_FLEGSNDAL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2326354980469	2	483.232364	964.450176	-0.062374	-3.0141E-05	0.35309	0.00017063	0.29072	0.00014049	483.2325021813567	56.185	0.58896	56.251	56.011	56.6	0.066448					49	22	3	0	0	0	0.083124	2	12058	12058;12104		36.127	2.0246	1	427830			4193	382	2872	2888	5533;5534	5533					-0.03347102098769028
FLEHQVSCKI	10	Unmodified	_FLEHQVSCKI_					0	0	0		nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1	nc|ENSG00000134874|Q86YF9-2|DZIP1	nc|ENSG00000134874|Q86YF9-2|DZIP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87799072265625	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.066	1	29.066	28.566	29.566	0								0	0	0	0.33711	1	4022	4022		1.7423	0	1				4194	2696	2873	2889	5535	5535					0.018577436626628696
FLEKHFSQAP	10	Unmodified	_FLEKHFSQAP_					0	0	0			REV__KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant	REV__KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8776550292969	3	401.876746	1202.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.711	1	25.711	25.211	26.211	0								0	0	0	0.33905	1	3052	3052		0.56317	0	1		+		4195	8069	2874	2890	5536	5536					0.01520816880338316
FLENEQFFL	9	Unmodified	_FLENEQFFL_					0	0	0		nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1	nc|ENSG00000188878|Q8TES7|FBF1	nc|ENSG00000188878|Q8TES7|FBF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.8109130859375	2	593.792589	1185.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.71	1	88.742	88.242	89.242	0.032257								0	0	0	0.20792	1	21951	21951		16.942	1.0951	1				4196	5178	2875	2891	5537	5537					-0.014736941051296526
FLERLYSFF	9	Unmodified	_FLERLYSFF_					0	0	0			REV__SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant	REV__SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.8918151855469	3	407.881608	1220.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.278	1	40.278	39.778	40.778	0								0	0	0	0.21325	1	7377	7377		16.149	5.2501	1		+		4197	10923	2876	2892	5538	5538					0.02150889028439451
FLEVAHEGLCR	11	Unmodified	_FLEVAHEGLCR_					0	0	0			REV__ENST00000337248.8_1_1:24727879-24740195:-|nuORF	REV__ENST00000337248.8_1_1:24727879-24740195:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3219604492188	2	637.321522	1272.62849	0.31247	0.00019914	0.70573	0.00044977	1.0182	0.00064892	637.3219303660812	76.078	0.5371	76.118	75.989	76.526	0.03923					53	27	4	0	0	0	0.40578	1	18156	18156		2.9952	1.151	1	1207300	+		4198	11446	2877	2893	5539	5539					0.0030824454863704887
FLEVYRHQM	9	Unmodified	_FLEVYRHQM_					0	0	0			REV__ENST00000502904.5_1_5:179043989-179045371:-|nuORF	REV__ENST00000502904.5_1_5:179043989-179045371:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.8918151855469	3	408.206098	1221.59646	-0.041908	-1.7107E-05	0.51697	0.00021103	0.47506	0.00019392	408.2063850685901	40.038	1.7145	40.038	39.692	41.407	0					85	60	2	0	0	0	0.24942	1	7377	7377		10.151	1.1743	1	67630	+		4199	8992	2878	2894	5540	5540					-0.005471231345381966
FLFIYCLVL	9	Unmodified	_FLFIYCLVL_					0	0	0		nc|ENSG00000133107|Q9UBN4-6|TRPC4;nc|ENSG00000133107|Q9UBN4-4|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4;ENSG00000072315|ENST00000262839|TRPC5	nc|ENSG00000133107|Q9UBN4-6|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2974243164062	2	565.819564	1129.62458	0.51667	0.00029234	-2.6832	-0.0015182	-2.1665	-0.0012259	566.318500959256	97.568	0.44858	97.568	97.461	97.91	0					34	20	3	0	0	0	0.237	1	24807	24807		14.582	0	1	81275			4200	2615	2879	2895	5541	5541					0.06494806792875352
FLFLSEVLQ	9	Unmodified	_FLFLSEVLQ_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C;DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant;nc|ENSG00000151240|Q9Y2E4-2|DIP2C	ENSG00000151240|ENST00000280886|DIP2C;nc|ENSG00000151240|Q9Y2E4-2|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.333740234375	2	548.307875	1094.6012	0.28334	0.00015536	0.28079	0.00015396	0.56414	0.00030932	548.3078706191747	95.155	0.42834	95.194	94.958	95.386	0.038864					29	17	2	0	0	0	0.2404	1	23961	23961		13.508	0.97634	1	117340			4201	3453;7528	2880	2896	5542	5542					0.05768084279907271
FLFLVYFLCFF	11	Unmodified	_FLFLVYFLCFF_					0	0	0		ENST00000376755.1_1_X:48433346-48433559:+|nuORF	ENST00000376755.1_1_X:48433346-48433559:+|nuORF	ENST00000376755.1_1_X:48433346-48433559:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2741394042969	3	486.922528	1457.74575	0.13404	6.5266E-05	-0.39113	-0.00019045	-0.2571	-0.00012519	486.9223010827859	74.382	0.40775	74.382	74.171	74.579	0					19	14	2	0	0	0	0.31085	1	17798	17798		3.0723	0.44103	1	120170			4202	6248	2881	2897	5543	5543					0.035190094355129986
FLFPFLCF	8	Unmodified	_FLFPFLCF_					0	0	0			REV__ENST00000298316.6_1_14:50361094-50361304:+|nuORF	REV__ENST00000298316.6_1_14:50361094-50361304:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7492065429688	2	517.264425	1032.5143	0.67314	0.00034819	0.1208	6.2486E-05	0.79394	0.00041068	517.2634638783614	54.29	0.3204	54.29	54.131	54.451	0					32	11	4	0	0	0	0.3576	1	11591	11591		6.3541	0.59368	1	174960	+		4203	11337	2882	2898	5544	5544					-0.0006599347552764812
FLFRKMWL	8	Unmodified	_FLFRKMWL_					0	0	0			REV__ENSG00000171487|ENST00000390649|NLRP5	REV__ENSG00000171487|ENST00000390649|NLRP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8216552734375	2	570.822973	1139.63139	-0.058166	-3.3203E-05	-1.168	-0.0006667	-1.2261	-0.00069991	570.8222003785136	24.744	0.13924	24.84	24.824	24.963	0.096075					15	12	2	0	0	0	0.54097	1	2655	2655		0.69038	0.088878	1	11659	+		4204	10258	2883	2899	5545	5545					0.06716164464114627
FLFSSHAVF	9	Unmodified	_FLFSSHAVF_					0	0	0			REV__ENST00000269143.7_1_18:12329122-12329224:-|nuORF	REV__ENST00000269143.7_1_18:12329122-12329224:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7701416015625	2	527.77146	1053.52837	0.080179	4.2316E-05	-1.8603	-0.00098182	-1.7801	-0.00093951	527.7706473060827	49.162	0.67738	49.238	48.981	49.658	0.076607					32	15	3	0	0	0	0.25979	1	9930	9930		11.64	1.5664	1	123810	+		4205	11269	2884	2900	5546	5546					0.0037437527712427254
FLFSYGTILS	10	Unmodified	_FLFSYGTILS_					0	0	0		ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2935180664062	2	574.305332	1146.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.614	1	67.614	67.114	68.114	0								0	0	0	0.2369	1	15683	15683		25.399	4.9457	1				4206	4257	2885	2901	5547	5547					0.02867780417295762
FLFYNFNHF	9	Unmodified	_FLFYNFNHF_					0	0	0			REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF	REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2204284667969	3	416.86607	1247.57638	0.35267	0.00014701	-2.0018	-0.00083448	-1.6491	-0.00068746	416.8651924980413	51.739	0.29605	51.739	51.562	51.858	0					16	9	2	0	0	0	0.25952	1	10801	10801		1.1933	0	1	50382	+		4207	11631	2886	2902	5548	5548					-0.037505508028289114
FLGTTPRKIHV	11	Unmodified	_FLGTTPRKIHV_					0	0	0			REV__ST8SIA2|p.L298F|1|0.17|ENSG00000140557|chr15:92464151-92464151|G/C|missense_variant	REV__ST8SIA2|p.L298F|1|0.17|ENSG00000140557|chr15:92464151-92464151|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.87890625	2	634.877322	1267.74009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.17	1	109.17	108.67	109.67	0								0	0	0	0.33362	1	28109	28109		2.9952	1.5133	1		+		4208	13006	2887	2903	5549	5549					0.1169304696807103
FLGTTPRKIHV	11	Unmodified	_FLGTTPRKIHV_					0	0	0			REV__ST8SIA2|p.L298F|1|0.17|ENSG00000140557|chr15:92464151-92464151|G/C|missense_variant	REV__ST8SIA2|p.L298F|1|0.17|ENSG00000140557|chr15:92464151-92464151|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8782348632812	2	634.877322	1267.74009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.27	1	109.27	108.77	109.77	0								0	0	0	0.33362	1	28127	28127		2.9952	1.3426	1		+		4209	13006	2887	2903	5550	5550					0.1169304696807103
FLGYEMHTF	9	Unmodified	_FLGYEMHTF_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8274536132812	2	572.760235	1143.50592	-0.005456	-3.125E-06	-2.7926	-0.0015995	-2.7981	-0.0016026	572.7570293204159	72.938	0.14418	72.938	72.883	73.027	0					7	4	3	0	0	0	0.25416	1	17294	17294		5.2307	0.90143	1	37740	+		4210	8187	2888	2904	5551	5551					-0.060095921827951315
FLHFAVLYVVT	11	Unmodified	_FLHFAVLYVVT_					0	0	0			REV__nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20	REV__nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.916259765625	3	436.916541	1307.72779	-0.12081	-5.2786E-05	0.062137	2.7149E-05	-0.058677	-2.5637E-05	436.91652792669936	44.233	1.4485	44.322	43.818	45.267	0.088924					94	51	3	0	0	0	0.40738	1	8410	8410		2.6312	1.3016	1	156460	+		4211	10512	2889	2905	5552	5552					0.08624010505013757
FLIGKMGII	9	Unmodified	_FLIGKMGII_					0	0	0		nc|ENSG00000280055|Q8N9X5|LINC02912	nc|ENSG00000280055|Q8N9X5|LINC02912	nc|ENSG00000280055|Q8N9X5|LINC02912	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.303955078125	2	496.304081	990.59361	0.50119	0.00024874	-0.4215	-0.00020919	0.079695	3.9553E-05	496.3037846417453	78.547	0.6176	78.577	78.2	78.818	0.030159					33	21	2	0	0	0	0.33356	1	18872	18872		2.3027	1.5091	1	463200			4212	7630	2890	2906	5553	5553					0.09793653478641318
FLIKLKTFR	9	Unmodified	_FLIKLKTFR_					0	0	0		tr|U7SSC2|U7SSC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01681PE=4SV=1	tr|U7SSC2|U7SSC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01681PE=4SV=1	tr|U7SSC2|U7SSC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01681PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3775024414062	2	583.376426	1164.7383	-0.051967	-3.0316E-05	0.81285	0.0004742	0.76088	0.00044388	583.3771346681812	42.002	0.42403	42.092	41.918	42.342	0.089764					22	16	2	0	0	0	0.34704	1	7832	7832		0.52476	0.066424	1	21576			4213	13549	2891	2907	5554	5554					0.16252037950130216
FLIQQPQI	8	Unmodified	_FLIQQPQI_					0	0	0			REV__nc|ENSG00000165417|P52655-2|GTF2A1	REV__nc|ENSG00000165417|P52655-2|GTF2A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.78704833984375	2	493.78711	985.559667	0.049667	2.4525E-05	-0.67741	-0.0003345	-0.62775	-0.00030997	493.78667261632756	109.95	0.1021	109.95	109.89	109.99	0					23	13	2	0	0	0	0.53858	1	28269	28269		2.3027	0	1	652250	+		4214	10037	2892	2908	5555	5555					0.06630948311226348
FLKFKHYHT	9	Unmodified	_FLKFKHYHT_					0	0	0		ENST00000332290.3_1_6:170104364-170104589:+|nuORF	ENST00000332290.3_1_6:170104364-170104589:+|nuORF	ENST00000332290.3_1_6:170104364-170104589:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.55718994140625	3	407.557348	1219.65021	0.00024723	1.0076E-07	-0.03866	-1.5756E-05	-0.038413	-1.5655E-05	407.5572833972125	39.929	2.6465	39.929	39.633	42.279	0					238	94	5	0	0	0	0.32375	1	7616	7616		2.086	2.086	1	529770			4215	6061	2893	2909	5556	5556					0.049174173595019965
FLKHIGHG	8	Unmodified	_FLKHIGHG_					0	0	0			REV__ENSG00000164024|ENST00000296411|METAP1	REV__ENSG00000164024|ENST00000296411|METAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.21490478515625	2	454.758687	907.502821	0.5183	0.0002357	0.26069	0.00011855	0.77899	0.00035425	454.76000279217624	57.347	0.11137	57.347	57.267	57.378	0					5	3	2	0	0	0	0.3576	1	12552	12552		0.79363	0	1	27756	+		4216	9973	2894	2910	5557	5557					0.04536945545373783
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.80224609375	2	522.802426	1043.5903	0.59072	0.00030883	-0.46499	-0.0002431	0.12572	6.5729E-05	522.8021058893869	92.849	1.2384	92.849	92.531	93.77	0					135	47	4	0	0	0	0.0042542	4	23383	23337;23383;23431;23480		100.37	20.279	1	2174000			4217	3957	2895	2911	5558;5559;5560;5561	5559					0.07024681905613761
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.8020629882812	2	522.802426	1043.5903	0.4723	0.00024692	-0.52583	-0.0002749	-0.053524	-2.7983E-05	522.8020791635078	92.783	1.2899	92.821	92.586	93.876	0.037369					137	51	5	0	0	0	0.0042542	5	23209	23167;23209;23257;23297;23337		100.37	22.387	1	2953700			4218	3957	2895	2911	5562;5563;5564;5565;5566	5563					0.07024681905613761
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.8025512695312	2	522.802426	1043.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.074	1	94.112	93.612	94.612	0.038086								0	0	0	0.2428	1	23584	23584		10.824	3.5347	1				4219	3957	2895	2911	5567	5567					0.07024681905613761
FLLEEPMPFF	10	Unmodified	_FLLEEPMPFF_					0	0	0		ENST00000522591.1_2_8:143784477-143784786:+|nuORF;ENSG00000160886|ENST00000292430|LY6K	ENST00000522591.1_2_8:143784477-143784786:+|nuORF	ENST00000522591.1_2_8:143784477-143784786:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.5721435546875	3	423.878987	1268.61513	0.6089	0.0002581	-3.2211	-0.0013654	-2.6122	-0.0011073	423.87744869708746	47.362	0.32619	47.362	47.231	47.557	0					12	10	2	0	0	0	0.31833	1	9525	9525		2.086	0.89267	1	53290			4220	3785	2896	2912	5568	5568					-0.008430062833440388
FLLLSIMMACC	11	Unmodified	_FLLLSIMMACC_					0	0	0		nc|ENSG00000101276|Q9NQ40-2|SLC52A3;ENSG00000101276|ENST00000645534|SLC52A3	nc|ENSG00000101276|Q9NQ40-2|SLC52A3	nc|ENSG00000101276|Q9NQ40-2|SLC52A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.7992553710938	2	622.799134	1243.58371	-0.02599	-1.6187E-05	0.10248	6.3826E-05	0.076492	4.7639E-05	622.7991256923034	35.477	0.79573	35.556	35.36	36.156	0.078827					50	29	2	0	0	0	0.41892	1	5929	5929		0	0	1	111590			4221	1247	2897	2913	5569	5569					-0.028333619048908076
FLLPLRAPF	9	Unmodified	_FLLPLRAPF_					0	0	0		ENSG00000168348|ENST00000307169|INSM2	ENSG00000168348|ENST00000307169|INSM2	ENSG00000168348|ENST00000307169|INSM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.3214111328125	2	537.328945	1072.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.675	1	59.675	59.175	60.175	0								0	0	0	0.19992	1	13257	13257		18.135	4.6271	1				4222	4280	2898	2914	5570	5570					0.10992104478918918
FLLQTGTRAS	10	Unmodified	_FLLQTGTRAS_					0	0	0		ENST00000377269.3_1_X:47071876-47072398:+|nuORF	ENST00000377269.3_1_X:47071876-47072398:+|nuORF	ENST00000377269.3_1_X:47071876-47072398:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3036499023438	2	547.303655	1092.59276	-0.043467	-2.379E-05	0.0024153	1.3219E-06	-0.041051	-2.2468E-05	547.3035267857545	33.09	0.50485	33.09	32.93	33.434	0					34	19	3	0	0	0	0.45945	1	5193	5193		2.9952	0	1	68472			4223	6254	2899	2915	5571	5571					0.0501653036328662
FLLTYHSIF	9	Unmodified	_FLLTYHSIF_					0	0	0			REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8849487304688	2	570.808042	1139.60153	0.11698	6.6771E-05	1.3022	0.00074328	1.4191	0.00081005	570.8088026680381	72.46	0.29343	72.516	72.401	72.694	0.055931					16	9	2	0	0	0	0.22289	1	17033	17033		18.135	0	1	121780	+		4224	11008	2900	2916	5572	5572					0.03731503999733832
FLLYQHFRP	9	Unmodified	_FLLYQHFRP_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.55731201171875	3	407.557348	1219.65021	-0.17443	-7.1089E-05	0.21126	8.6099E-05	0.03683	1.501E-05	407.5574679532945	39.711	2.1526	39.8	39.513	41.666	0.088566					237	83	5	0	0	0	0.31496	1	7310	7310		2.7352	2.7352	1	1500700			4225	3120	2901	2917	5573	5573					0.049174173595019965
FLMHECFH	8	Unmodified	_FLMHECFH_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2282104492188	2	532.228048	1062.44154	0.21031	0.00011193	0.18038	9.6005E-05	0.3907	0.00020794	532.2280580676044	21.365	0.56846	21.467	21.318	21.887	0.10178					161	58	5	0	0	0	0.53817	1	1747	1747		2.5775	2.5775	1	191530	+		4226	8864	2902	2918	5574	5574					-0.08718070540589906
FLMRWLFRSS	10	Unmodified	_FLMRWLFRSS_					0	0	0			REV__ENST00000402924.5_1_7:43830867-43832360:+|nuORF	REV__ENST00000402924.5_1_7:43830867-43832360:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	448.5484924316406	3	448.241142	1341.7016	0.25093	0.00011248	1.5035	0.00067394	1.7545	0.00078642	448.24171422406386	48.238	0.58836	48.318	48.134	48.722	0.080029					39	19	3	0	0	0	0.3184	1	9616	9616		1.7423	0.67081	1	270250	+		4227	11757	2903	2919	5575	5575					0.04441418061901459
FLMYEYTTF	9	Unmodified	_FLMYEYTTF_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.3060913085938	2	607.775551	1213.53655	0.67706	0.0004115	2.6114	0.0015871	3.2885	0.0019986	607.7771906198078	79.35	0.66373	79.35	79.047	79.711	0					30	21	2	0	0	0	0.25162	1	19354	19354		7.9102	5.8504	1	100970	+		4228	8034	2904	2920	5576	5576					-0.06167858588423769
FLMYEYTTF	9	Unmodified	_FLMYEYTTF_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.3055419921875	2	607.775551	1213.53655	0.55527	0.00033748	2.6728	0.0016244	3.228	0.0019619	607.777280895604	79.335	0.50158	79.361	79.098	79.599	0.026436					25	17	2	0	0	0	0.24683	1	19142	19142		7.2892	0	1	121740	+		4229	8034	2904	2920	5577	5577					-0.06167858588423769
FLNEKECYF	9	Unmodified	_FLNEKECYF_					0	0	0			REV__nc|ENSG00000160282|O95954-3|FTCD	REV__nc|ENSG00000160282|O95954-3|FTCD	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7717895507812	2	596.7708	1191.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.718	1	74.767	74.267	75.267	0.048546								0	0	0	0.2428	1	17691	17691		10.824	4.1008	1		+		4230	9843	2905	2921	5578	5578					-0.06105626873932124
FLNKCMMKY	9	Unmodified	_FLNKCMMKY_					0	0	0			REV__ENST00000262982.2_1_20:47705880-47706101:+|nuORF	REV__ENST00000262982.2_1_20:47705880-47706101:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3430786132812	2	589.281966	1176.54938	0.22801	0.00013436	0.45962	0.00027085	0.68763	0.00040521	589.2821849439661	90.383	0.51277	90.417	90.143	90.656	0.034065					45	20	3	0	0	0	0.24791	1	22436	22436		10.074	2.1638	1	413140	+		4231	11239	2906	2922	5579	5579					-0.031834420015229625
FLNNHDQPFM	10	Unmodified	_FLNNHDQPFM_					0	0	0		ENSG00000146166|ENST00000370657|LGSN	ENSG00000146166|ENST00000370657|LGSN	ENSG00000146166|ENST00000370657|LGSN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1888732910156	3	421.525607	1261.55499	0.099593	4.1981E-05	3.9228	0.0016536	4.0224	0.0016955	421.5274779139705	95.659	0.18298	95.698	95.655	95.838	0.038872					9	6	2	0	0	0	0.31841	1	24089	24089		0.56317	0	1	53241			4232	3279	2907	2923	5580	5580					-0.06532303893845892
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2937927246094	3	486.95902	1457.85523	0.27122	0.00013207	0.08122	3.9551E-05	0.35244	0.00017163	487.29343990683066	96.854	1.3041	96.854	96.134	97.438	0					161	61	3	0	0	0	0.47161	2	24479	24479;24666		0.69767	0.60282	1	344120			4233	3434	2908	2924	5581;5582	5581					0.1446158894243581
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.95916748046875	3	486.95902	1457.85523	0.28813	0.00014031	-0.11073	-5.3922E-05	0.1774	8.6385E-05	486.9588551046137	96.81	1.8447	96.85	96.136	97.981	0.039772					130	94	2	0	0	0	0.47446	1	24523	24523		0.15932	0.064481	1	432080			4234	3434	2908	2924	5583	5583					0.1446158894243581
FLPEAPAEL	9	Unmodified	_FLPEAPAEL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7640380859375	2	493.7633	985.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.253	1	70.314	69.814	70.814	0.060562								0	0	0	0.24643	1	16330	16330		10.074	0.72649	1				4235	793	2909	2925	5584	5584					0.0187124932037932
FLPEKHDAF	9	Unmodified	_FLPEKHDAF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2791137695312	2	552.279649	1102.54475	-0.24828	-0.00013712	-0.26834	-0.0001482	-0.51662	-0.00028532	552.279388467759	18.102	0.30501	18.102	17.975	18.28	0					64	37	2	0	0	0	0.3354	1	1062	1062		2.0598	0	1	28057			4236	3449	2910	2926	5585	5585					-0.0024254355678294814
FLPPYTFQI	9	Unmodified	_FLPPYTFQI_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3028564453125	2	563.302593	1124.59063	0.44866	0.00025273	-1.0762	-0.00060625	-0.62758	-0.00035351	563.3018079584081	87.878	1.1312	87.878	87.008	88.139	0					87	42	3	0	0	0	0.0014903	2	21855	21855;21908		118.89	84.792	1	617410			4237	484	2911	2927	5586;5587	5586					0.03332101625483119
FLPPYTFQI	9	Unmodified	_FLPPYTFQI_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.302978515625	2	563.302593	1124.59063	0.31985	0.00018017	-0.26439	-0.00014893	0.05546	3.1241E-05	563.302254702772	87.844	1.3724	87.874	87.285	88.657	0.030037					106	52	3	0	0	0	0.0014903	2	21679	21679;21733		118.89	84.792	1	512020			4238	484	2911	2927	5588;5589	5588					0.03332101625483119
FLPVRVDVL	9	Unmodified	_FLPVRVDVL_					0	0	0			REV__nc|ENSG00000132470|P16144-4|ITGB4	REV__nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3242797851562	2	529.32386	1056.63317	0.61313	0.00032454	-0.38027	-0.00020129	0.23286	0.00012326	529.3236505487188	70.612	0.35761	70.672	70.507	70.864	0.060562					32	14	3	0	0	0	0.26684	1	16439	16439		10.824	0	1	173410	+		4239	9118	2912	2928	5590	5590					0.10711496753697247
FLPWMLFI	8	Unmodified	_FLPWMLFI_					0	0	0		ENST00000511525.1_1_5:43446326-43483989:-|nuORF;PAIP1-C5orf28|1|fusion;PAIP1-C5orf28|2|fusion;ENSG00000151881|ENST00000397080|TMEM267;PAIP1-C5orf28|3|fusion	ENST00000511525.1_1_5:43446326-43483989:-|nuORF	ENST00000511525.1_1_5:43446326-43483989:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3407592773438	2	533.793349	1065.57215	0.55699	0.00029732	-0.98252	-0.00052446	-0.42553	-0.00022714	534.2937395409899	93.687	0.19688	93.687	93.573	93.77	0					9	6	2	0	0	0	0.3576	1	23625	23625		6.3541	1.1234	1	31606			4240	3478	2913	2929	5591	5591					0.04198268449908937
FLPYHVLLL	9	Unmodified	_FLPYHVLLL_					0	0	0		ENSG00000119714|ENST00000650645|GPR68	ENSG00000119714|ENST00000650645|GPR68	ENSG00000119714|ENST00000650645|GPR68	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.8366088867188	2	557.836603	1113.65865	0.81757	0.00045607	-0.44271	-0.00024696	0.37485	0.00020911	557.8361281236686	79.854	0.48777	79.854	79.682	80.169	0					33	16	3	0	0	0	0.18003	1	19451	19451		20.871	20.871	1	216290			4241	2084	2914	2930	5592	5592					0.10636971276153417
FLPYHVLLL	9	Unmodified	_FLPYHVLLL_					0	0	0		ENSG00000119714|ENST00000650645|GPR68	ENSG00000119714|ENST00000650645|GPR68	ENSG00000119714|ENST00000650645|GPR68	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8367919921875	2	557.836603	1113.65865	0.6431	0.00035874	-0.36068	-0.0002012	0.28242	0.00015754	557.8363407857248	79.844	0.7338	79.871	79.648	80.382	0.026436					31	25	2	0	0	0	0.18003	1	19283	19283		20.871	20.871	1	152170			4242	2084	2914	2930	5593	5593					0.10636971276153417
FLPYHVLLL	9	Unmodified	_FLPYHVLLL_					0	0	0		ENSG00000119714|ENST00000650645|GPR68	ENSG00000119714|ENST00000650645|GPR68	ENSG00000119714|ENST00000650645|GPR68	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	557.836603	1113.65865	0.6431	0.00035874	-0.36068	-0.0002012	0.28242	0.00015754	557.8363407857248	79.844	0.7338	79.871	79.648	80.382	0.026436	0.0084516	4.0611E-05	NaN	20.871	31	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152170			4243	2084	2914	2930							0.10636971276153417
FLQLCIFPRC	10	Unmodified	_FLQLCIFPRC_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3223876953125	2	620.322479	1238.63041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.279	1	96.279	95.779	96.779	0								0	0	0	0.33892	1	24415	24415		1.4819	0.15237	1				4244	2302	2915	2931	5594	5594					0.020635820328834598
FLQLQWYL	8	Unmodified	_FLQLQWYL_					0	0	0			REV__ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	REV__ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8019409179688	2	555.80276	1109.59097	0.056234	3.1255E-05	-0.64445	-0.00035819	-0.58821	-0.00032693	555.8023024155325	32.659	0.48804	32.659	32.47	32.958	0					49	23	3	0	0	0	0.53817	1	5108	5108		2.5775	0	1	59220	+		4245	7728	2916	2932	5595	5595					0.04055521345298985
FLQLQWYL	8	Unmodified	_FLQLQWYL_					0	0	0			REV__ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	REV__ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8023681640625	2	555.80276	1109.59097	0.1751	9.732E-05	-1.4882	-0.00082713	-1.3131	-0.00072981	555.8018735545528	34.3	1.3895	34.3	33.464	34.854	0					86	53	2	0	0	0	0.54081	1	5647	5647		0.79363	0	1	35831	+		4246	7728	2916	2932	5596	5596					0.04055521345298985
FLQNKSFIF	9	Unmodified	_FLQNKSFIF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|219|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|219|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3261108398438	2	572.313492	1142.61243	-0.011984	-6.8586E-06	0.40374	0.00023106	0.39175	0.0002242	572.3137446940423	71.978	1.1067	71.978	71.92	73.027	0					51	38	2	0	0	0	0.25209	1	17129	17129		12.532	0	1	151270	+		4247	12721	2917	2933	5597	5597					0.04682906374023332
FLQRAWLI	8	Unmodified	_FLQRAWLI_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.8096313476562	2	523.810919	1045.60729	0.27821	0.00014573	-1.6328	-0.00085528	-1.3546	-0.00070955	523.8099621930584	95.139	0.43198	95.139	94.896	95.328	0					26	19	2	0	0	0	0.53423	1	24084	24084		5.2307	0	1	55902	+		4248	8023	2918	2934	5598	5598					0.08630647302061334
FLQRAWLI	8	Unmodified	_FLQRAWLI_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.8115234375	2	523.810919	1045.60729	0.12878	6.7454E-05	-0.90432	-0.00047369	-0.77555	-0.00040624	523.8102983173682	95.096	0.39716	95.135	94.935	95.332	0.038864					24	16	2	0	0	0	0.53423	1	23901	23901		5.2307	0	1	62143	+		4249	8023	2918	2934	5599	5599					0.08630647302061334
FLRDDGTWLT	10	Unmodified	_FLRDDGTWLT_					0	0	0			REV__ENST00000409822.1_1_2:238486756-238499247:-|nuORF	REV__ENST00000409822.1_1_2:238486756-238499247:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.3433227539062	2	612.306395	1222.59824	0.24536	0.00015023	-1.5586	-0.00095433	-1.3132	-0.0008041	612.8071924553441	70.979	1.5499	70.979	70.708	72.258	0					71	54	2	0	0	0	0.29345	1	16770	16770		18.146	5.9057	1	2161300	+		4250	11776	2919	2935	5600	5600					-0.004157908449087699
FLRKFSKTW	9	Unmodified	_FLRKFSKTW_					0	0	0		ENST00000430010.1_1_2:55451599-55452256:+|nuORF	ENST00000430010.1_1_2:55451599-55452256:+|nuORF	ENST00000430010.1_1_2:55451599-55452256:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.84814453125	2	606.848033	1211.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.51	1	103.51	103.01	104.01	0								0	0	0	0.28527	1	26609	26609		2.0598	0	1				4251	6483	2920	2936	5601	5601					0.08413990393614768
FLRSKKSSEE	10	Unmodified	_FLRSKKSSEE_					0	0	0		nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	nc|ENSG00000249437|Q13075-2|NAIP	nc|ENSG00000249437|Q13075-2|NAIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3277587890625	2	605.824952	1209.63535	0.27305	0.00016542	0.18568	0.00011249	0.45873	0.00027791	605.8248090981846	27.13	0.29089	27.216	27.077	27.368	0.0867					35	21	2	0	0	0	0.47318	1	3352	3352		0.40072	0	1	23743			4252	5678	2921	2937	5602	5602					0.038918807008712974
FLSCPAHTLFV	11	Unmodified	_FLSCPAHTLFV_					0	0	0		ENSG00000159307|ENST00000360835|SCUBE1	ENSG00000159307|ENST00000360835|SCUBE1	ENSG00000159307|ENST00000360835|SCUBE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.8159790039062	2	617.818084	1233.62162	0.033645	2.0787E-05	-1.7705	-0.0010938	-1.7368	-0.001073	618.3183010712277	70.062	0.49254	70.062	69.704	70.196	0					24	17	2	0	0	0	0.39378	1	16395	16395		5.7319	0	1	235350			4253	3723	2922	2938	5603	5603					0.014149316680459378
FLSCPAHTLFV	11	Unmodified	_FLSCPAHTLFV_					0	0	0		ENSG00000159307|ENST00000360835|SCUBE1	ENSG00000159307|ENST00000360835|SCUBE1	ENSG00000159307|ENST00000360835|SCUBE1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	617.818084	1233.62162	-0.07239	-4.4724E-05	-2.3106	-0.0014275	-2.383	-0.0014722	617.8164525049734	69.835	0.40378	69.896	69.61	70.013	0.060562	-0.083064	-0.00033097	NaN	5.7319	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111030			4254	3723	2922	2938							0.014149316680459378
FLSEYQHQ	8	Unmodified	_FLSEYQHQ_					0	0	0		HEXIM1|p.E62Gfs*23|1|0.17|ENSG00000186834|chr17:45149373-45149376|GGAG/-|frameshift_variant;ENSG00000186834|ENST00000332499|HEXIM1	HEXIM1|p.E62Gfs*23|1|0.17|ENSG00000186834|chr17:45149373-45149376|GGAG/-|frameshift_variant	HEXIM1|p.E62Gfs*23|1|0.17|ENSG00000186834|chr17:45149373-45149376|GGAG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2450561523438	2	526.245806	1050.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.64	1	20.64	20.14	21.14	0								0	0	0	0.38822	1	1658	1658		0.69038	0	1				4255	5095	2923	2939	5604	5604					-0.04615993487595915
FLSGCYSALCL	11	Unmodified	_FLSGCYSALCL_					0	0	0			REV__ENST00000490320.2_2_3:159944343-159945677:+|nuORF	REV__ENST00000490320.2_2_3:159944343-159945677:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3185424804688	2	588.775028	1175.5355	0.66528	0.0003917	-1.2208	-0.00071881	-0.55557	-0.00032711	588.7740609917574	74.316	0.27903	74.364	74.203	74.482	0.048546					15	9	2	0	0	0	0.28093	1	17591	17591		26.268	4.5215	1	128910	+		4256	12144	2924	2940	5605	5605					-0.04524396228953265
FLSLEQYL	8	Unmodified	_FLSLEQYL_					0	0	0		nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.77166748046875	2	506.771126	1011.5277	0.26131	0.00013243	-1.2487	-0.00063283	-0.98743	-0.0005004	506.77118779710776	79.128	0.35393	79.128	78.928	79.282	0					20	11	2	0	0	0	0.4772	1	19201	19201		15.847	0	1	127620			4257	7626	2925	2941	5606	5606					0.02239535837418316
FLSVLGISYL	10	Unmodified	_FLSVLGISYL_					0	0	0		ENST00000389100.8_1_5:63665583-63665673:+|nuORF	ENST00000389100.8_1_5:63665583-63665673:+|nuORF	ENST00000389100.8_1_5:63665583-63665673:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.32421875	2	556.323525	1110.6325	0.86595	0.00048175	-1.1158	-0.00062072	-0.24981	-0.00013898	556.3229902172204	70.701	0.51388	70.76	70.595	71.109	0.059219					38	19	3	0	0	0	0.37232	1	16532	16532		14.838	0.93222	1	180660			4258	6307	2926	2942	5607	5607					0.0816065731398794
FLTDFALIF	9	Unmodified	_FLTDFALIF_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-5|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-5|ABCA10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.246826171875	2	543.797143	1085.57973	0.48541	0.00026397	-0.054867	-2.9837E-05	0.43055	0.00023413	543.7968759344551	91.779	0.56258	91.779	91.602	92.164	0					52	20	4	0	0	0	0.2404	1	23041	23041		13.508	0	1	298210	+		4259	9709	2927	2943	5608	5608					0.04036699251173559
FLTEHLRVI	9	Unmodified	_FLTEHLRVI_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.331298828125	2	564.332216	1126.64988	-0.51636	-0.0002914	-0.5647	-0.00031868	-1.0811	-0.00061007	564.3319980281818	41.327	0.31528	41.327	41.172	41.487	0					21	10	3	0	0	0	0.29576	1	7695	7695		7.2892	0	1	34580	+		4260	10921	2928	2944	5609	5609					0.09161997639648689
FLVGLRSR	8	Unmodified	_FLVGLRSR_					0	0	0			REV__ENSG00000124257|ENST00000372518|NEURL2	REV__ENSG00000124257|ENST00000372518|NEURL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.290771484375	2	474.292894	946.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.686	1	77.686	77.186	78.186	0								0	0	0	0.38822	1	18758	18758		1.8442	1.0506	1		+		4261	8952	2929	2945	5610	5610					0.09581190125220473
FLVVRLKKV	9	Unmodified	_FLVVRLKKV_					0	0	0			REV__POGZ|p.A984S|1|0.28|ENSG00000143442|chr1:151406085-151406085|C/A|missense_variant	REV__POGZ|p.A984S|1|0.28|ENSG00000143442|chr1:151406085-151406085|C/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.395263671875	2	551.378969	1100.74339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.39	1	109.4	108.9	109.9	0.019402								0	0	0	0.2927	1	27970	27970		0.52476	0	1		+		4262	9465	2930	2946	5611	5611					0.19704341812735038
FLWGFFFFFF	10	Unmodified	_FLWGFFFFFF_					0	0	0		ENST00000452360.6_1_4:942397-950358:+|nuORF	ENST00000452360.6_1_4:942397-950358:+|nuORF	ENST00000452360.6_1_4:942397-950358:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.74237060546875	3	468.898711	1403.6743	0.039819	1.8671E-05	-1.5715	-0.00073688	-1.5317	-0.00071821	468.897827162972	51.014	0.37551	51.084	50.909	51.285	0.069874					28	14	3	0	0	0	0.31833	1	10521	10521		2.086	0	1	110490			4263	6569	2931	2947	5612	5612					-0.011387422068310116
FLWGFGFFLI	10	Unmodified	_FLWGFGFFLI_					0	0	0			REV__ENSG00000188092|ENST00000314163|GPR89B	REV__ENSG00000188092|ENST00000314163|GPR89B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2276916503906	3	416.226827	1245.65865	0.49436	0.00020577	1.7511	0.00072887	2.2455	0.00093464	416.22770425061464	46.967	0.65598	46.967	46.744	47.4	0					36	23	2	0	0	0	0.45239	1	9380	9380		4.1895	0	1	100670	+		4264	8825	2932	2948	5613	5613					0.04564971276158758
FLWHPVLFL	9	Unmodified	_FLWHPVLFL_					0	0	0			REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8133544921875	2	586.33677	1170.65899	0.92876	0.00054457	-1.1039	-0.00064724	-0.17511	-0.00010267	586.3359654985749	92.583	0.37726	92.619	92.429	92.807	0.036522					16	13	2	0	0	0	0.25416	1	23077	23077		5.2307	0	1	46569	+		4265	11316	2933	2949	5614	5614					0.08048390995986665
FLWMKKPFF	9	Unmodified	_FLWMKKPFF_					0	0	0		ENST00000377191.4_1_20:21337251-21338378:+|nuORF	ENST00000377191.4_1_20:21337251-21338378:+|nuORF	ENST00000377191.4_1_20:21337251-21338378:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3385009765625	2	622.338455	1242.66236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.393	1	84.393	83.893	84.893	0								0	0	0	0.22979	1	20798	20798		13.508	8.7519	1				4266	6253	2934	2950	5615	5615					0.050733177783058636
FLYIRKRRF	9	Unmodified	_FLYIRKRRF_					0	0	0			REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF	REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.5994567871094	3	433.599658	1297.77715	-0.086772	-3.7624E-05	-0.58423	-0.00025332	-0.67101	-0.00029095	433.5993913258378	45.289	1.6079	45.377	44.853	46.461	0.08754					157	60	3	0	0	0	0.33028	3	8704	8704;8824;8980		2.7352	0	1	143630	+		4267	11744	2935	2951	5616;5617;5618	5616					0.14016763304493907
FLYLLFHL	8	Unmodified	_FLYLLFHL_					0	0	0			REV__ENST00000579226.5_1_18:3255982-3256117:+|nuORF	REV__ENST00000579226.5_1_18:3255982-3256117:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.320068359375	2	533.310221	1064.60589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.11	1	107.11	106.61	107.61	0								0	0	0	0.38822	1	27635	27635		6.3541	3.4649	1		+		4268	12546	2936	2952	5619	5619					0.07617013213325663
FLYPFFGVL	9	Unmodified	_FLYPFFGVL_					0	0	0		nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	nc|ENSG00000164707|Q9UKG4|SLC13A4	nc|ENSG00000164707|Q9UKG4|SLC13A4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2577514648438	2	551.802229	1101.5899	0.41967	0.00023157	-3.5369	-0.0019517	-3.1172	-0.0017201	551.8002085992651	74.337	0.13831	74.337	74.262	74.4	0					6	4	2	0	0	0	0.237	1	17747	17747		14.582	5.2343	1	35733			4269	4028	2937	2953	5620	5620					0.04317306976417967
FLYWQQHTV	9	Unmodified	_FLYWQQHTV_					0	0	0			REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF	REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5574951171875	3	407.873224	1220.59784	-0.45787	-0.00018675	-2.3619	-0.00096337	-2.8198	-0.0011501	408.2066531964512	41.021	0.57409	41.111	40.854	41.428	0.089642					27	20	2	0	0	0	0.25875	1	7445	7445		0.96228	0	1	52487	+		4270	9207	2938	2954	5621	5621					-0.0036316577409252204
FLYYPDPVL	9	Unmodified	_FLYYPDPVL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.79443359375	2	563.794601	1125.57465	0.2678	0.00015098	1.0196	0.00057483	1.2874	0.00072581	563.794890201806	86.09	0.44724	86.09	85.908	86.356	0					25	17	2	0	0	0	0.12809	1	21327	21327		26.884	8.7487	1	125930			4271	1847	2939	2955	5622	5622					0.016883953885553638
FLYYPDPVL	9	Unmodified	_FLYYPDPVL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.79541015625	2	563.794601	1125.57465	0.45436	0.00025617	0.49903	0.00028135	0.95339	0.00053752	563.7947769790114	86.08	0.3886	86.105	85.869	86.258	0.025169					20	13	2	0	0	0	0.033885	1	21157	21157		48.346	25.197	1	158610			4272	1847	2939	2955	5623	5623					0.016883953885553638
FMATVYAVNAF	11	Unmodified	_FMATVYAVNAF_					0	0	0			REV__SLC7A8|p.S292F|1|0.13|ENSG00000092068|chr14:23139461-23139461|G/A|missense_variant	REV__SLC7A8|p.S292F|1|0.13|ENSG00000092068|chr14:23139461-23139461|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.317626953125	2	617.302267	1232.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.048	1	70.048	69.548	70.548	0								0	0	0	0.32197	1	16420	16420		7.1017	0.89594	1		+		4273	12990	2940	2956	5624	5624					-0.01701061085918809
FMCHRRQAI	9	Unmodified	_FMCHRRQAI_					0	0	0		ENSG00000126856|ENST00000449207|PRDM7;ENSG00000164256|ENST00000296682|PRDM9	ENSG00000126856|ENST00000449207|PRDM7	ENSG00000126856|ENST00000449207|PRDM7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2922973632812	2	581.292045	1160.56954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.348	1	68.411	67.911	68.911	0.063507								0	0	0	0.25992	1	15750	15750		3.9444	0	1				4274	2349	2941	2957	5625	5625					-0.004325102266648173
FMCKKDFHPAS	11	Unmodified	_FMCKKDFHPAS_					0	0	0		ENST00000472169.1_1_2:175252411-175260410:-|nuORF;ENST00000461454.1_1_2:175243642-175260410:-|nuORF;nc|ENSG00000138433|Q86X95-2|CIR1;CIR1|p.K314Mfs*21|1|0.12|ENSG00000138433|chr2:174348894-174348909|TGAAGCTTTCTCTTCT/-|frameshift_variant;ENSG00000138433|ENST00000342016|CIR1	ENST00000472169.1_1_2:175252411-175260410:-|nuORF	ENST00000472169.1_1_2:175252411-175260410:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5390319824219	3	437.538859	1309.59475	-0.18342	-8.0252E-05	-0.58619	-0.00025648	-0.7696	-0.00033673	437.53895543634735	19.347	0.79001	19.347	19	19.79	0					182	91	4	0	0	0	0.41448	1	1343	1343		1.0136	0.16863	1	72467			4275	195	2942	2958	5626	5626					-0.04766500214759617
FMDECHATGFL	11	Unmodified	_FMDECHATGFL_					0	0	0		TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion;ENSG00000100116|ENST00000248924|GCAT;nc|ENSG00000100116|O75600-2|GCAT	TBC1D22A-GCAT|1|fusion	TBC1D22A-GCAT|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.7657470703125	2	635.765191	1269.51583	0.40105	0.00025497	-0.361	-0.00022951	0.040046	2.546E-05	635.7650932967814	71.207	0.62918	71.265	70.997	71.626	0.058578					49	22	4	0	0	0	0.40453	1	16666	16666		3.2813	0.78282	1	483750			4276	13425	2943	2959	5627	5627					-0.10814772239723425
FMEEEVIAL	9	Unmodified	_FMEEEVIAL_					0	0	0			REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.258056640625	2	540.767726	1079.5209	0.32403	0.00017522	0.94786	0.00051257	1.2719	0.0006878	541.2694095487456	69.058	0.53495	69.12	68.852	69.387	0.062119					24	20	2	0	0	0	0.25051	1	15973	15973		7.9102	0.62092	1	180280	+		4277	11499	2944	2960	5628	5628					-0.01568145105466101
FMEELREQK	9	Unmodified	_FMEELREQK_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.203369140625	3	403.869262	1208.58596	-0.23873	-9.6415E-05	0.27208	0.00010989	0.033354	1.347E-05	404.20374704153943	32.941	0.48123	33.015	32.803	33.284	0.074322					28	19	2	0	0	0	0.33208	1	5029	5029		2.4985	0	1	24795	+		4278	10130	2945	2961	5629	5629					-0.00999150579605157
FMEELREQK	9	Unmodified	_FMEELREQK_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	403.869262	1208.58596	-0.23873	-9.6415E-05	0.27208	0.00010989	0.033354	1.347E-05	404.20374704153943	32.941	0.48123	33.015	32.803	33.284	0.074322	-0.0032424	6.9796E-05	NaN	2.4985	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24795	+		4279	10130	2945	2961							-0.00999150579605157
FMFTQMVEKL	10	Unmodified	_FMFTQMVEKL_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.2147521972656	3	425.215494	1272.62465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.177	1	96.216	95.716	96.716	0.039772								0	0	0	0.33892	1	24226	24226		1.7423	1.1791	1				4280	7618	2946	2962	5630	5630					-0.0007556126945473807
FMHFLFAG	8	Unmodified	_FMHFLFAG_					0	0	0			REV__ENST00000374481.7_1_2:204600776-204600923:+|nuORF	REV__ENST00000374481.7_1_2:204600776-204600923:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7236022949219	2	485.236199	968.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.079	1	84.101	83.601	84.601	0.021744								0	0	0	0.38822	1	20544	20544		0.79363	0	1		+		4281	11627	2947	2963	5631	5631					-0.02764621312167037
FMKVVKPK	8	Unmodified	_FMKVVKPK_					0	0	0		nc|ENSG00000148655|Q9H2I8|LRMDA;ENST00000593699.5_1_10:77643188-78317043:+|nuORF;ENSG00000148655|ENST00000611255|LRMDA	nc|ENSG00000148655|Q9H2I8|LRMDA	nc|ENSG00000148655|Q9H2I8|LRMDA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.8050842285156	2	488.804248	975.593944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.52	1	109.54	109.04	110.04	0.019402								0	0	0	0.38822	1	28011	28011		2.5775	0	1				4282	3372	2948	2964	5632	5632					0.10517073198491289
FMLAQFTSYL	10	Unmodified	_FMLAQFTSYL_					0	0	0			REV__ENSG00000181752|ENST00000313447|OR8K5	REV__ENSG00000181752|ENST00000313447|OR8K5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.7440795898438	2	610.804642	1219.59473	0.71726	0.0004381	-2.3198	-0.001417	-1.6026	-0.00097886	610.8031864561618	67.496	0.7002	67.561	67.32	68.02	0.065063					30	23	2	0	0	0	0.31625	1	15568	15568		13.042	4.4492	1	138030	+		4283	10540	2949	2965	5633	5633					-0.006281769430870554
FMLAQFTSYL	10	Unmodified	_FMLAQFTSYL_					0	0	0			REV__ENSG00000181752|ENST00000313447|OR8K5	REV__ENSG00000181752|ENST00000313447|OR8K5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	610.804642	1219.59473	0.43597	0.00026629	-2.3053	-0.0014081	-1.8693	-0.0011418	610.8032253260814	67.531	0.41599	67.531	67.309	67.725	0	-0.014749	9.5361E-06	NaN	13.042	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173590	+		4284	10540	2949	2965							-0.006281769430870554
FMLEMRNFS	9	Unmodified	_FMLEMRNFS_					0	0	0			REV__KRTAP4-9|p.P117Lfs*145|1|0.42|ENSG00000212722|chr17:41105736-41105736|C/-|frameshift_variant	REV__KRTAP4-9|p.P117Lfs*145|1|0.42|ENSG00000212722|chr17:41105736-41105736|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.2896118164062	2	587.772819	1173.53109	0.76331	0.00044865	-1.922	-0.0011297	-1.1587	-0.00068104	587.7717180476263	97.659	0.06868	97.659	97.615	97.684	0					4	2	2	0	0	0	0.25281	1	24841	24841		6.7232	1.4263	1	20051	+		4285	12692	2950	2966	5634	5634					-0.04873860651855466
FMLGIGMLGYP	11	Unmodified	_FMLGIGMLGYP_					0	0	0		ENSG00000135097|ENST00000257552|MSI1	ENSG00000135097|ENST00000257552|MSI1	ENSG00000135097|ENST00000257552|MSI1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3013916015625	2	599.803588	1197.59262	0.27633	0.00016575	-1.8905	-0.0011339	-1.6142	-0.00096817	599.8024807763968	95.414	0.13414	95.414	95.305	95.439	0					6	4	2	0	0	0	0.31072	1	24148	24148		3.5965	0.31518	1	210240			4286	2713	2951	2967	5635	5635					0.0017307104742485535
FMLSLYWP	8	Unmodified	_FMLSLYWP_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2954711914062	2	528.764789	1055.51502	-0.17744	-9.3821E-05	0.18981	0.00010037	0.012376	6.5442E-06	528.764750039046	26.401	0.52524	26.401	26.152	26.677	0					50	40	2	0	0	0	0.3576	1	3206	3206		0.79363	0	1	15352	+		4287	9450	2952	2968	5636	5636					-0.010511988264397587
FMMPFDLMT	9	Unmodified	_FMMPFDLMT_					0	0	0		ENSG00000183066|ENST00000328823|WBP2NL	ENSG00000183066|ENST00000328823|WBP2NL	ENSG00000183066|ENST00000328823|WBP2NL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7474975585938	2	566.747424	1131.4803	0.26742	0.00015156	1.9481	0.0011041	2.2155	0.0012556	566.748367275891	82.496	1.5611	82.518	81.938	83.499	0.021744					120	55	3	0	0	0	0.21603	1	20083	20083		20.454	1.1966	1	310140			4288	4902	2953	2969	5637	5637					-0.08018526021101025
FMMRRDQEVP	10	Unmodified	_FMMRRDQEVP_					0	0	0			REV__nc|ENSG00000289604|P0CG41|CTAGE8	REV__nc|ENSG00000289604|P0CG41|CTAGE8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.8793029785156	3	436.877764	1307.61146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.42	1	100.42	99.919	100.92	0								0	0	0	0.3384	1	25674	25674		2.086	0.75636	1		+		4289	11052	2954	2970	5638	5638					-0.030039993288255573
FMMRRDQEVP	10	Unmodified	_FMMRRDQEVP_					0	0	0			REV__nc|ENSG00000289604|P0CG41|CTAGE8	REV__nc|ENSG00000289604|P0CG41|CTAGE8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.8793640136719	3	436.877764	1307.61146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.7	1	105.7	105.2	106.2	0								0	0	0	0.3384	1	27236	27236		2.086	0.89267	1		+		4290	11052	2954	2970	5639	5639					-0.030039993288255573
FMNDGTWKF	9	Unmodified	_FMNDGTWKF_					0	0	0			REV__nc|ENSG00000164830|Q8N573-7|OXR1	REV__nc|ENSG00000164830|Q8N573-7|OXR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2803344726562	2	573.257859	1144.50117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.85	1	79.877	79.377	80.377	0.026436								0	0	0	0.18435	1	19258	19258		20.454	0.039092	1		+		4291	12834	2955	2971	5640	5640					-0.06530476325542622
FMNWTDRSIG	10	Unmodified	_FMNWTDRSIG_					0	0	0			REV__ENSG00000188215|ENST00000324344|DCUN1D3	REV__ENSG00000188215|ENST00000324344|DCUN1D3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.2369384765625	2	613.784773	1225.55499	-0.094085	-5.7748E-05	2.758	0.0016928	2.664	0.0016351	614.2887645789589	72.569	0.43431	72.625	72.374	72.809	0.055931					21	14	2	0	0	0	0.31565	1	17010	17010		12.241	4.3305	1	80853	+		4292	10761	2956	2972	5641	5641					-0.04876303893865952
FMPHQPSL	8	Unmodified	_FMPHQPSL_					0	0	0		ENST00000396987.7_1_8:41479703-41480342:+|nuORF	ENST00000396987.7_1_8:41479703-41480342:+|nuORF	ENST00000396987.7_1_8:41479703-41480342:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7375183105469	2	478.736563	955.458573	-0.58248	-0.00027885	2.6276	0.0012579	2.0452	0.00097909	478.7379220332262	40.74	0.56919	40.74	40.505	41.075	0					52	19	4	0	0	0	0.53026	1	7547	7547		7.9102	2.1783	1	204230			4293	6346	2957	2973	5642	5642					-0.02093826663121945
FMVNVYFP	8	Unmodified	_FMVNVYFP_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7492980957031	2	508.749139	1015.48372	0.028752	1.4628E-05	-0.39154	-0.0001992	-0.36279	-0.00018457	508.7487984657975	21.801	0.34481	21.902	21.777	22.122	0.10178					60	38	2	0	0	0	0.53817	1	1851	1851		2.5775	0.73324	1	43485	+		4294	9187	2958	2974	5643	5643					-0.0233977186054517
FNAQIFNVL	9	Unmodified	_FNAQIFNVL_					0	0	0			REV__ENSG00000144481|ENST00000324695|TRPM8	REV__ENSG00000144481|ENST00000324695|TRPM8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2515258789062	2	533.290017	1064.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.287	1	52.287	51.787	52.787	0								0	0	0	0.26267	1	11008	11008		6.7232	0.51738	1		+		4295	9499	2959	2975	5644	5644					0.03578046822894976
FNDLISCIRI	10	Unmodified	_FNDLISCIRI_					0	0	0		SRGAP1|p.D607H|1|0.11|ENSG00000196935|chr12:64108937-64108937|G/C|missense_variant;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1	SRGAP1|p.D607H|1|0.11|ENSG00000196935|chr12:64108937-64108937|G/C|missense_variant	SRGAP1|p.D607H|1|0.11|ENSG00000196935|chr12:64108937-64108937|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3195190429688	2	597.320991	1192.62743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.553	1	72.553	72.053	73.053	0								0	0	0	0.21183	1	17184	17184		28.495	0.86571	1				4296	5256	2960	2976	5645	5645					0.03882030179715912
FNDLISCIRI	10	Unmodified	_FNDLISCIRI_					0	0	0		SRGAP1|p.D607H|1|0.11|ENSG00000196935|chr12:64108937-64108937|G/C|missense_variant;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1	SRGAP1|p.D607H|1|0.11|ENSG00000196935|chr12:64108937-64108937|G/C|missense_variant	SRGAP1|p.D607H|1|0.11|ENSG00000196935|chr12:64108937-64108937|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3196411132812	2	597.320991	1192.62743	-0.0035184	-2.1016E-06	-0.69399	-0.00041454	-0.69751	-0.00041664	597.3196205308197	72.45	0.91711	72.506	72.239	73.156	0.055939					92	31	4	0	0	0	0.24525	1	16994	16994		28.495	0.86571	1	787230			4297	5256	2960	2976	5646	5646					0.03882030179715912
FNESGQLVVF	10	Unmodified	_FNESGQLVVF_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2910766601562	2	570.290214	1138.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.093	1	24.193	23.693	24.693	0.099739								0	0	0	0.33905	1	2466	2466		1.3295	0	1				4298	680	2961	2977	5647	5647					0.0021342175209611014
FNFVKQRR	8	Unmodified	_FNFVKQRR_					0	0	0		DUSP2|p.D285N|1|0.24|ENSG00000158050|chr2:96143915-96143915|C/T|missense_variant	DUSP2|p.D285N|1|0.24|ENSG00000158050|chr2:96143915-96143915|C/T|missense_variant	DUSP2|p.D285N|1|0.24|ENSG00000158050|chr2:96143915-96143915|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.816162109375	2	547.814525	1093.6145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.85	1	115.86	115.36	116.36	0.013092								0	0	0	0.38822	1	29432	29432		2.3027	0.9732	1				4299	304	2962	2978	5648	5648					0.07143379902527158
FNGIFERSK	9	Unmodified	_FNGIFERSK_					0	0	0			REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2909545898438	2	549.290548	1096.56654	0.018839	1.0348E-05	0.10969	6.025E-05	0.12853	7.0599E-05	549.2906097700112	26.109	0.36439	26.2	26.005	26.369	0.091507					74	32	3	0	0	0	0.30397	1	3024	3024		6.2058	0.9089	1	49105	+		4300	8447	2963	2979	5649	5649					0.022122611917893664
FNGIFERSK	9	Unmodified	_FNGIFERSK_					0	0	0			REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.290548	1096.56654	0.018839	1.0348E-05	0.10969	6.025E-05	0.12853	7.0599E-05	549.2906097700112	26.109	0.36439	26.2	26.005	26.369	0.091507	-0.0057292	-4.4257E-05	NaN	6.2058	74	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49105	+		4301	8447	2963	2979							0.022122611917893664
FNGKSWNHLF	10	Unmodified	_FNGKSWNHLF_					0	0	0			REV__ENSG00000158481|ENST00000368170|CD1C	REV__ENSG00000158481|ENST00000368170|CD1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.2096862792969	3	417.208607	1248.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.628	1	71.686	71.186	72.186	0.058578								0	0	0	0.33528	1	16747	16747		3.0723	0	1		+		4302	9807	2964	2980	5650	5650					-0.010366475426053512
FNIHNELLE	9	Unmodified	_FNIHNELLE_					0	0	0			REV__nc|ENSG00000151952|Q14C87-2|TMEM132D	REV__nc|ENSG00000151952|Q14C87-2|TMEM132D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2982788085938	2	564.787838	1127.56112	0.20229	0.00011425	-4.0251	-0.0022733	-3.8228	-0.0021591	564.7864639910648	90.182	0.66638	90.182	90.118	90.785	0					33	26	2	0	0	0	0.24791	1	22565	22565		10.074	0	1	361880	+		4303	9661	2965	2981	5651	5651					0.002445376093419327
FNIRDYGEPF	10	Unmodified	_FNIRDYGEPF_					0	0	0		ENSG00000135899|ENST00000258381|SP110	ENSG00000135899|ENST00000258381|SP110	ENSG00000135899|ENST00000258381|SP110	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8145141601562	2	629.29857	1256.58259	0.095708	6.0229E-05	2.4348	0.0015322	2.5305	0.0015924	629.2999806489325	78.715	0.33392	78.715	78.568	78.901	0					21	11	3	0	0	0	0.39662	1	19076	19076		12.241	0	1	339440			4304	2752	2966	2982	5652	5652					-0.03544077361971176
FNIWKKLFV	9	Unmodified	_FNIWKKLFV_					0	0	0		nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91	nc|nan|Q3C1V1-2|C11orf91	nc|nan|Q3C1V1-2|C11orf91	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.856201171875	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.345	1	87.373	86.873	87.873	0.027573								0	0	0	0.27427	1	21539	21539		4.3292	0	1				4305	5508	2967	2983	5653	5653					0.1070006254171858
FNKFFQKDK	9	Unmodified	_FNKFFQKDK_					0	0	0			REV__ENSG00000114124|ENST00000682958|GRK7	REV__ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3226928710938	2	601.321848	1200.62914	0.042918	2.5807E-05	1.8036	0.0010846	1.8465	0.0011104	601.3225827185618	107.58	0.22334	107.58	107.39	107.61	0					32	21	2	0	0	0	0.30005	1	27763	27763		6.7232	0	1	168770	+		4306	8759	2968	2984	5654	5654					0.03685407259990825
FNKLLMII	8	Unmodified	_FNKLLMII_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.3037109375	2	496.304081	990.59361	0.50531	0.00025079	-0.42316	-0.00021002	0.082142	4.0768E-05	496.30379405199284	78.744	2.0165	78.744	78.153	80.169	0					103	69	2	0	0	0	0.54081	1	18977	18977		0.79363	0.19213	1	494570	+		4307	8346	2969	2985	5655	5655					0.09793653478641318
FNKYKVYFE	9	Unmodified	_FNKYKVYFE_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.31591796875	2	619.316232	1236.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.201	1	31.274	30.774	31.774	0.073782								0	0	0	0.2927	1	4531	4531		0.52476	0.066424	1		+		4308	10251	2970	2986	5656	5656					0.009065851658533575
FNQPKGLLRF	10	Unmodified	_FNQPKGLLRF_					0	0	0			REV__ENST00000578387.1_1_4:184019140-184020019:-|nuORF	REV__ENST00000578387.1_1_4:184019140-184020019:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.2361145019531	3	407.236385	1218.68733	0.5891	0.0002399	-0.67177	-0.00027357	-0.082678	-3.367E-05	407.23603928901645	60.973	0.61307	60.973	60.805	61.418	0					35	21	2	0	0	0	0.44671	1	13673	13673		5.4027	0.68679	1	138670	+		4309	12542	2971	2987	5657	5657					0.08673088905266013
FNQPKGLLRF	10	Unmodified	_FNQPKGLLRF_					0	0	0			REV__ENST00000578387.1_1_4:184019140-184020019:-|nuORF	REV__ENST00000578387.1_1_4:184019140-184020019:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.23553466796875	3	407.236385	1218.68733	0.050908	2.0732E-05	-0.2101	-8.5562E-05	-0.15919	-6.483E-05	407.570635422992	60.844	0.61333	60.918	60.774	61.388	0.073418					42	20	3	0	0	0	0.45773	1	13550	13550		3.3196	0.47636	1	152060	+		4310	12542	2971	2987	5658	5658					0.08673088905266013
FNQVQAMPTF	10	Unmodified	_FNQVQAMPTF_					0	0	0		nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1	nc|ENSG00000106100|Q9Y239-3|NOD1	nc|ENSG00000106100|Q9Y239-3|NOD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3474731445312	2	591.784241	1181.55393	0.47113	0.00027881	-2.3668	-0.0014006	-1.8956	-0.0011218	591.7825559693081	83.064	0.67125	83.064	82.848	83.519	0					35	22	2	0	0	0	0.31565	1	20407	20407		12.241	2.8575	1	318530			4311	1506	2972	2988	5659	5659					-0.029585182627670292
FNRVNNKFH	9	Unmodified	_FNRVNNKFH_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.3075561523438	2	588.307064	1174.59957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.22	1	100.22	99.724	100.72	0								0	0	0	0.27427	1	25614	25614		4.3292	0	1		+		4312	12097	2973	2989	5660	5660					0.019258880344978024
FNSLAKTISIV	11	Unmodified	_FNSLAKTISIV_					0	0	0			REV__tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	REV__tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2606811523438	2	596.850438	1191.68632	0.2047	0.00012217	3.1923	0.0019053	3.397	0.0020275	596.852318293551	76.683	0.24202	76.722	76.552	76.794	0.03923					15	8	3	0	0	0	0.30979	1	18283	18283		7.609	1.4032	1	72661	+		4313	13270	2974	2990	5661	5661					0.09814829745710085
FNSLNELQH	9	Unmodified	_FNSLNELQH_					0	0	0			REV__ENST00000443067.1_1_1:166765603-166766044:+|nuORF	REV__ENST00000443067.1_1_1:166765603-166766044:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7545166015625	2	551.269813	1100.52507	0.21801	0.00012018	0.50381	0.00027774	0.72183	0.00039792	551.2700683100833	35.437	1.5464	35.437	35.205	36.751	0					121	58	4	0	0	0	0.27332	1	5863	5863		10.074	4.3421	1	291640	+		4314	8094	2975	2991	5662	5662					-0.021169195675156516
FNSWLDPEFF	10	Unmodified	_FNSWLDPEFF_					0	0	0		ENST00000416928.6_1_2:177040485-177040746:-|nuORF	ENST00000416928.6_1_2:177040485-177040746:-|nuORF	ENST00000416928.6_1_2:177040485-177040746:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.5312194824219	3	434.532756	1300.57644	0.3344	0.00014531	-3.0399	-0.0013209	-2.7055	-0.0011756	434.5313488784022	48.732	0.28254	48.732	48.576	48.858	0					24	9	3	0	0	0	0.45773	1	9941	9941		3.3196	0.88486	1	101330			4315	6431	2976	2992	5663	5663					-0.061825955934864396
FNSWLDPEFF	10	Unmodified	_FNSWLDPEFF_					0	0	0		ENST00000416928.6_1_2:177040485-177040746:-|nuORF	ENST00000416928.6_1_2:177040485-177040746:-|nuORF	ENST00000416928.6_1_2:177040485-177040746:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	434.532756	1300.57644	0.052641	2.2874E-05	-2.5212	-0.0010956	-2.4686	-0.0010727	434.8658218501239	48.621	0.30814	48.699	48.533	48.841	0.077267	-0.01685	0.00037155	NaN	3.3196	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75246			4316	6431	2976	2992							-0.061825955934864396
FNTERNVL	8	Unmodified	_FNTERNVL_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-4|FAM184A	REV__nc|ENSG00000111879|Q8NB25-4|FAM184A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7608642578125	2	496.761623	991.508694	0.12837	6.3768E-05	-0.29218	-0.00014515	-0.16381	-8.1377E-05	496.76131817372084	45.118	0.59252	45.206	44.988	45.581	0.08754					40	22	3	0	0	0	0.53202	1	8707	8707		6.7232	6.7232	1	76629	+		4317	8700	2977	2993	5664	5664					0.012599992663695048
FNVTAKTK	8	Unmodified	_FNVTAKTK_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.75311279296875	2	454.763635	907.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.56	1	48.64	48.14	49.14	0.080029								0	0	0	0.38822	1	9746	9746		5.2307	1.9494	1		+		4318	9947	2978	2994	5665	5665					0.05526088760097991
FNYNVMWYI	9	Unmodified	_FNYNVMWYI_					0	0	0			REV__ENSG00000111335|ENST00000392583|OAS2	REV__ENSG00000111335|ENST00000392583|OAS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.3565063476562	2	625.289159	1248.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.01	1	107.03	106.53	107.53	0.025711								0	0	0	0.28409	1	27407	27407		2.3027	1.3405	1		+		4319	8685	2979	2995	5666	5666					-0.05057330257363901
FPAAIEHTI	9	Unmodified	_FPAAIEHTI_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.76898193359375	2	499.768917	997.523281	0.21981	0.00010985	0.061093	3.0532E-05	0.2809	0.00014039	499.7688381154396	52.536	1.0823	52.536	52.305	53.388	0					100	40	4	0	0	0	2.6167E-05	3	11104	11059;11104;11179		139.54	87.651	1	1227300			4320	508	2980	2996	5667;5668;5669	5668					0.024420714145321654
FPAAIEHTI	9	Unmodified	_FPAAIEHTI_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.76904296875	2	499.768917	997.523281	0.3335	0.00016667	0.051885	2.5931E-05	0.38539	0.0001926	499.7688310183546	52.487	0.79082	52.554	52.339	53.13	0.067173					77	32	4	0	0	0	2.6167E-05	2	10946	10946;11069		139.54	99.587	1	1016300			4321	508	2980	2996	5670;5671	5670					0.024420714145321654
FPAARRCHSC	10	Unmodified	_FPAARRCHSC_					0	0	0		ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2677001953125	2	574.266027	1146.5175	0.50613	0.00029065	2.0499	0.0011772	2.556	0.0014678	574.2671246775199	65.556	1.4202	65.623	65.212	66.632	0.066872					92	54	3	0	0	0	0.43771	1	14942	14942		7.1017	0.37856	1	983180			4322	2404	2981	2997	5672	5672					-0.049896736404434705
FPAEAGRDTL	10	Unmodified	_FPAEAGRDTL_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7721557617188	2	538.772188	1075.52982	-0.22461	-0.00012101	-0.076936	-4.1451E-05	-0.30154	-0.00016246	538.7720721157975	42.792	1.6128	42.792	42.365	43.978	0					131	56	4	0	0	0	0.058752	5	8170	8079;8126;8170;8215;8259		55.235	23.966	1	246730			4323	1355	2982	2998	5673;5674;5675;5676;5677	5675					-0.004920354247587966
FPAEAGRDTL	10	Unmodified	_FPAEAGRDTL_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7720947265625	2	538.772188	1075.52982	0.022456	1.2099E-05	-0.073411	-3.9552E-05	-0.050955	-2.7453E-05	538.7720013683213	42.712	1.1366	42.801	42.37	43.507	0.089764					108	41	3	0	0	0	0.065727	4	8018	7923;7969;8018;8061		53.317	22.048	1	218180			4324	1355	2982	2998	5678;5679;5680;5681	5680					-0.004920354247587966
FPAEAQALTL	10	Unmodified	_FPAEAQALTL_					0	0	0			REV__ENST00000492979.2_1_7:76019335-76019617:-|nuORF	REV__ENST00000492979.2_1_7:76019335-76019617:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.78857421875	2	530.787307	1059.56006	0.23368	0.00012403	2.3373	0.0012406	2.571	0.0013647	530.7881886863049	103.34	0.3196	103.34	103.11	103.43	0					37	21	2	0	0	0	0.45945	1	26510	26510		2.9952	0	1	52701	+		4325	12159	2983	2999	5682	5682					0.03266323240427482
FPAEFAMYL	9	Oxidation (M)	_FPAEFAM(Oxidation (M))YL_		FPAEFAM(1)YL		FPAEFAM(48)YL	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7572631835938	2	552.757161	1103.49977	0.67287	0.00037193	-1.6835	-0.00093059	-1.0107	-0.00055865	552.7573254904656	83.646	1.1009	83.646	83.141	84.242	0					93	37	4	0	0	0	0.033885	2	20593	20593;20594		48.346	33.508	1	330800			4326	1813	2984	3000	5683;5684	5683		108			-0.04784110414311726
FPAEFAMYL	9	Oxidation (M)	_FPAEFAM(Oxidation (M))YL_		FPAEFAM(1)YL		FPAEFAM(48)YL	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7576293945312	2	552.757161	1103.49977	0.46901	0.00025925	-1.0877	-0.00060122	-0.61866	-0.00034197	552.7574080660189	83.677	1.1014	83.699	83.194	84.295	0.021744					100	39	4	0	0	0	0.033885	1	20471	20471		48.346	32.499	1	350370			4327	1813	2984	3000	5685	5685		108			-0.04784110414311726
FPAEFAMYL	9	Unmodified	_FPAEFAMYL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7597045898438	2	544.759704	1087.50485	0.14239	7.7569E-05	2.1686	0.0011814	2.311	0.0012589	544.7608156039881	90.953	0.98651	90.989	90.657	91.644	0.035446					66	36	2	0	0	0	0.25979	1	22569	22569		11.64	3.7301	1	114970			4328	1813	2984	3001	5686	5686					-0.035398065517028954
FPAGFVLQL	9	Unmodified	_FPAGFVLQL_					0	0	0		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2843933105469	2	496.284203	990.553853	0.61626	0.00030584	-0.20872	-0.00010358	0.40754	0.00020225	496.2840655480308	92.072	0.8985	92.072	91.559	92.458	0					74	33	3	0	0	0	0.026569	2	23141	23105;23141		53.576	19.388	1	228910			4329	4252	2985	3002	5687;5688	5688					0.058198497995590515
FPAGFVLQL	9	Unmodified	_FPAGFVLQL_					0	0	0		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.284423828125	2	496.284203	990.553853	0.48551	0.00024095	0.036631	1.8179E-05	0.52214	0.00025913	496.28412516730526	92.062	1.0553	92.099	91.559	92.615	0.036522					78	37	3	0	0	0	0.045114	3	22940	22940;23049;23113		44.407	10.22	1	254950			4330	4252	2985	3002	5689;5690;5691	5689					0.058198497995590515
FPAGFVLQL	9	Unmodified	_FPAGFVLQL_					0	0	0		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	496.284203	990.553853	0.61626	0.00030584	-0.20872	-0.00010358	0.40754	0.00020225	496.2840655480308	92.072	0.8985	92.072	91.559	92.458	0	-0.01308	-0.00015579	NaN	53.576	74	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228910			4331	4252	2985	3002							0.058198497995590515
FPAGFVLQL	9	Unmodified	_FPAGFVLQL_					0	0	0		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	496.284203	990.553853	0.48551	0.00024095	0.036631	1.8179E-05	0.52214	0.00025913	496.28412516730526	92.062	1.0553	92.099	91.559	92.615	0.036522	0.01308	8.7733E-05	NaN	53.576	78	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254950			4332	4252	2985	3002							0.058198497995590515
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(130)YPSM(130)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2435302734375	2	598.24356	1194.47257	0.45279	0.00027088	-0.94846	-0.00056741	-0.49566	-0.00029653	598.2433049824361	55.54	1.5272	55.54	54.635	56.162	0					181	55	4	0	0	0	2.838E-05	6	12028	11850;11893;11940;11985;12028;12134		125.62	104.09	1	479350			4333	1413	2986	3003	5692;5693;5694;5695;5696;5697	5696		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(150)YPSM(150)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2435302734375	2	598.24356	1194.47257	0.30297	0.00018125	-0.4204	-0.0002515	-0.11743	-7.0252E-05	598.2433471430511	57.639	2.1007	57.639	56.116	58.217	0					226	76	4	0	0	0	2.5684E-07	8	12688	12354;12448;12499;12549;12594;12688;12741;12794		147.83	120.2	1	643920			4334	1413	2986	3003	5698;5699;5700;5701;5702;5703;5704;5705	5703		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(93)YPSM(93)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2440795898438	2	598.24356	1194.47257	-0.028863	-1.7267E-05	0.31279	0.00018712	0.28392	0.00016985	598.2438181685818	58.373	1.1968	58.373	58.256	59.453	0					105	44	4	0	0	0	0.00078581	2	12890	12890;12963		92.822	65.193	1	399680			4335	1413	2986	3003	5706;5707	5706		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(120)YPSM(120)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2440185546875	2	598.24356	1194.47257	0.36529	0.00021853	0.085084	5.0901E-05	0.45038	0.00026943	598.2437009769435	61.383	2.2784	61.383	59.408	61.686	0					241	94	4	0	0	0	4.1812E-05	10	13661	13373;13421;13466;13510;13559;13610;13661;13707;13753;13806		117.6	86.33	1	715180			4336	1413	2986	3003	5708;5709;5710;5711;5712;5713;5714;5715;5716;5717	5714		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(71)YPSM(71)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7452392578125	2	598.24356	1194.47257	0.30116	0.00018017	0.22102	0.00013222	0.52218	0.00031239	598.2436513418694	61.7	1.3871	61.7	61.582	62.969	0					97	57	2	0	0	0	0.016242	2	13851	13851;13904		71.134	54.984	1	409740			4337	1413	2986	3003	5718;5719	5718		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(74)YPSM(74)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.24365234375	2	598.24356	1194.47257	0.34974	0.00020923	-0.79399	-0.000475	-0.44425	-0.00026577	598.2433573396024	55.405	1.4883	55.47	54.672	56.16	0.065128					172	58	4	0	0	0	0.012345	6	11744	11698;11744;11788;11835;11887;11985		74.423	52.886	1	490570			4338	1413	2986	3003	5720;5721;5722;5723;5724;5725	5721		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(120)YPSM(120)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2435913085938	2	598.24356	1194.47257	0.22805	0.00013643	-0.061991	-3.7086E-05	0.16606	9.9342E-05	598.2434048638687	57.407	2.0188	57.476	56.163	58.182	0.068375					175	76	3	0	0	0	4.1812E-05	10	12491	12158;12199;12244;12286;12333;12387;12440;12491;12538;12582		117.6	91.056	1	576780			4339	1413	2986	3003	5726;5727;5728;5729;5730;5731;5732;5733;5734;5735	5733		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(82)YPSM(82)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.243896484375	2	598.24356	1194.47257	0.10731	6.4199E-05	0.23347	0.00013967	0.34078	0.00020387	598.2437209364163	58.223	1.2643	58.294	58.136	59.4	0.070477					88	47	2	0	0	0	0.0038249	4	12690	12690;12737;12821;12881		81.613	60.076	1	373320			4340	1413	2986	3003	5736;5737;5738;5739	5736		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(120)YPSM(120)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.243896484375	2	598.24356	1194.47257	0.14372	8.5981E-05	0.29766	0.00017807	0.44138	0.00026405	598.2437374110855	60.859	2.135	60.933	59.38	61.515	0.073421					222	80	4	0	0	0	4.1812E-05	10	13467	13144;13212;13265;13319;13366;13418;13467;13517;13560;13610		117.6	117.6	1	460710			4341	1413	2986	3003	5740;5741;5742;5743;5744;5745;5746;5747;5748;5749	5746		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(55)YPSM(55)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2433471679688	2	598.24356	1194.47257	0.18451	0.00011038	0.093355	5.5849E-05	0.27787	0.00016623	598.2438210857113	61.49	0.13564	61.564	61.486	61.622	0.073421					18	12	2	0	0	0	0.060429	1	13670	13670		54.774	38.624	1	589970			4342	1413	2986	3003	5750	5750		85;86			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(52)YPSM(52)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2435913085938	2	598.24356	1194.47257	0.22136	0.00013243	0.34051	0.00020371	0.56187	0.00033613	598.2438766990795	61.645	1.3261	61.718	61.637	62.964	0.073421					99	53	2	0	0	0	0.06954	2	13731	13731;13792		52.268	40.774	1	396340			4343	1413	2986	3003	5751;5752	5751		85;86			-0.11688962017001359
FPAGYMYPSM	10	Oxidation (M)	_FPAGYM(Oxidation (M))YPSM_		FPAGYM(1)YPSM		FPAGYM(60)YPSM(-60)	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2465209960938	2	590.246103	1178.47765	0.75384	0.00044495	-0.55776	-0.00032922	0.19608	0.00011574	590.2458525960756	65.53	3.0353	65.53	64.575	67.61	0					199	113	3	0	0	0	0.012345	5	15336	15028;15072;15336;15383;15516		74.423	46.794	2	375710			4344	1413	2986	3004	5753;5754;5755;5756;5757	5755		85;86			-0.10444658154415265
FPAGYMYPSM	10	Oxidation (M)	_FPAGYMYPSM(Oxidation (M))_		FPAGYM(0.003)YPSM(0.997)		FPAGYM(-25)YPSM(25)	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.246337890625	2	590.246103	1178.47765	0.62555	0.00036923	-0.37003	-0.00021841	0.25551	0.00015082	590.2458943827046	65.325	1.578	65.394	64.536	66.114	0.068916					134	60	3	0	0	0	0.016242	3	14863	14768;14863;14915		71.134	56.552	2	436130			4345	1413	2986	3004	5758;5759;5760	5759		85;86			-0.10444658154415265
FPAGYMYPSM	10	Oxidation (M)	_FPAGYM(Oxidation (M))YPSM_		FPAGYM(0.996)YPSM(0.004)		FPAGYM(24)YPSM(-24)	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.24609375	2	590.246103	1178.47765	0.78832	0.0004653	-0.14589	-8.6111E-05	0.64243	0.00037919	590.246005923558	66.425	1.6669	66.492	65.971	67.638	0.066872					136	61	3	0	0	0	0.060429	3	15136	15082;15136;15355		54.774	33.237	2	367650			4346	1413	2986	3004	5761;5762;5763	5762		85;86			-0.10444658154415265
FPAHILDCL	9	Unmodified	_FPAHILDCL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7654418945312	2	514.76532	1027.51609	0.14871	7.6548E-05	-0.5622	-0.0002894	-0.4135	-0.00021285	514.7654178709829	73.449	1.7898	73.449	73.145	74.935	0					107	62	4	0	0	0	1.1297E-12	4	17477	17477;17522;17574;17620		179.23	125.65	1	1868500			4347	13348	2987	3005	5764;5765;5766;5767	5764					0.003430155424211989
FPAHILDCL	9	Unmodified	_FPAHILDCL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7655639648438	2	514.76532	1027.51609	0.315	0.00016215	-0.43917	-0.00022607	-0.12416	-6.3915E-05	514.7653303370732	73.37	1.6399	73.422	73.152	74.792	0.052574					116	60	3	0	0	0	1.1297E-12	4	17314	17314;17355;17410;17466		179.23	125.65	1	1963000			4348	13348	2987	3005	5768;5769;5770;5771	5768					0.003430155424211989
FPALFGDVKF	10	Unmodified	_FPALFGDVKF_					0	0	0		chr7:48089636-48090188|499|11.42|0.69|4.04|+|ENST00000436673|UPP1,UPP1;ENSG00000183696|ENST00000395564|UPP1	chr7:48089636-48090188|499|11.42|0.69|4.04|+|ENST00000436673|UPP1,UPP1	chr7:48089636-48090188|499|11.42|0.69|4.04|+|ENST00000436673|UPP1,UPP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7902221679688	2	570.808042	1139.60153	0.59223	0.00033805	-2.1307	-0.0012162	-1.5385	-0.00087817	570.8068259396352	80.781	1.0829	80.805	80.461	81.544	0.023605					68	38	2	0	0	0	0.0052271	1	19528	19528		100.09	61.915	1	547790			4349	181	2988	3006	5772	5772					0.03731503999733832
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(42)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2547607421875	2	511.254785	1020.49502	0.52737	0.00026962	-1.3482	-0.00068927	-0.82083	-0.00041965	511.2547520855334	70.237	1.6394	70.237	69.47	71.109	0					186	58	5	0	0	0	0.0569	1	16368	16368		41.84	27.001	1	1002800			4350	1601	2989	3007	5773	5773		94			-0.014409945570719174
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(56)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2548828125	2	511.254785	1020.49502	0.019406	9.9213E-06	0.2795	0.00014289	0.2989	0.00015281	511.2548774201475	72.859	2.5578	72.859	71.614	74.171	0					189	91	3	0	0	0	0.02293	2	17334	17249;17334		56.177	29.293	1	1232300			4351	1601	2989	3007	5774;5775	5775		94			-0.014409945570719174
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(48)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2549133300781	2	511.254785	1020.49502	0.16611	8.4922E-05	0.036203	1.8509E-05	0.20231	0.00010343	511.25474581647785	72.69	2.6272	72.746	71.921	74.548	0.055939					203	95	3	0	0	0	0.03472	2	17054	17054;17108		47.749	27.295	1	1111500			4352	1601	2989	3007	5776;5777	5776		94			-0.014409945570719174
FPASFVSDFIL	11	Unmodified	_FPASFVSDFIL_					0	0	0			REV__SAMM50|p.S317P|1|0.17|ENSG00000100347|chr22:43981403-43981403|T/C|missense_variant	REV__SAMM50|p.S317P|1|0.17|ENSG00000100347|chr22:43981403-43981403|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.822021484375	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.419	1	93.419	92.919	93.919	0								0	0	0	0.3074	1	23544	23544		12.241	4.0851	1		+		4353	12980	2990	3008	5778	5778					0.02207451963067797
FPASHDPDP	9	Unmodified	_FPASHDPDP_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant	nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000141503|Q8N4C8-5|MINK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.71673583984375	2	491.716882	981.41921	-0.10774	-5.2979E-05	-0.1297	-6.3776E-05	-0.23744	-0.00011675	491.71670280441117	30.623	1.1676	30.623	30.265	31.432	0					112	60	2	0	0	0	0.26684	2	4472	4472;4609		10.824	3.5347	1	46228			4354	3062	2991	3009	5779;5780	5779					-0.07224255413007086
FPASHDPDP	9	Unmodified	_FPASHDPDP_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant	nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000141503|Q8N4C8-5|MINK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7171936035156	2	491.716882	981.41921	-0.088931	-4.3729E-05	-0.011125	-5.4703E-06	-0.10006	-4.9199E-05	491.7167323659092	30.702	1.1461	30.777	30.312	31.458	0.075403					108	63	2	0	0	0	0.33704	1	4425	4425		1.8442	0	1	42693			4355	3062	2991	3009	5781	5781					-0.07224255413007086
FPATGCQKL	9	Unmodified	_FPATGCQKL_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7493896484375	2	482.74967	963.484787	-0.73278	-0.00035375	-0.25902	-0.00012504	-0.99181	-0.0004788	482.7494579051358	41.141	1.6669	41.141	40.787	42.454	0					103	59	3	0	0	0	0.012041	3	7635	7591;7635;7689		63.961	14.028	1	221380			4356	2833	2992	3010	5782;5783;5784	5783					0.0015844250834788909
FPATGCQKL	9	Unmodified	_FPATGCQKL_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7492370605469	2	482.74967	963.484787	-0.57126	-0.00027578	-0.39789	-0.00019208	-0.96915	-0.00046786	482.74946409732144	41.155	1.447	41.245	40.823	42.27	0.089645					99	57	2	0	0	0	0.0050339	3	7518	7425;7470;7518		82.529	23.85	1	179750			4357	2833	2992	3010	5785;5786;5787	5787					0.0015844250834788909
FPATPLLDYAL	11	Unmodified	_FPATPLLDYAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.831787109375	2	610.831714	1219.64888	0.48671	0.0002973	0.3745	0.00022875	0.86121	0.00052605	610.8318137835989	93.42	0.49932	93.42	93.187	93.686	0					57	19	4	0	0	0	0.033776	3	23532	23532;23564;23577		61.602	43.456	1	577490			4358	2533	2993	3011	5788;5789;5790	5788					0.047837384801141525
FPATPLLDYAL	11	Unmodified	_FPATPLLDYAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.8322143554688	2	610.831714	1219.64888	0.50474	0.00030831	0.50538	0.0003087	1.0101	0.00061701	610.8319985153173	93.409	0.41562	93.446	93.22	93.635	0.037369					48	17	4	0	0	0	0.06744	2	23362	23362;23405		53.404	35.258	1	424450			4359	2533	2993	3011	5791;5792	5791					0.047837384801141525
FPATVLWEL	9	Unmodified	_FPATVLWEL_					0	0	0		nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.294677734375	2	538.294768	1074.57498	0.38678	0.0002082	-0.48649	-0.00026188	-0.099715	-5.3676E-05	538.294436574726	94.825	1.0341	94.825	94.371	95.405	0					77	43	2	0	0	0	0.01943	3	23981	23937;23981;24021		58.679	36.932	1	791380			4360	3584	2994	3012	5793;5794;5795	5794					0.040678151084193814
FPATVLWEL	9	Unmodified	_FPATVLWEL_					0	0	0		nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.294677734375	2	538.294768	1074.57498	0.45575	0.00024533	-0.66671	-0.00035889	-0.21095	-0.00011356	538.2943262940418	94.865	0.99236	94.904	94.371	95.364	0.038872					73	40	2	0	0	0	0.01943	3	23806	23761;23806;23847		58.679	36.932	1	557530			4361	3584	2994	3012	5796;5797;5798	5797					0.040678151084193814
FPAVGMHSL	9	Oxidation (M)	_FPAVGM(Oxidation (M))HSL_		FPAVGM(1)HSL		FPAVGM(74)HSL	0	0	1		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7417907714844	2	487.741845	973.469137	0.089653	4.3728E-05	0.081809	3.9902E-05	0.17146	8.3629E-05	487.7419068189792	48.206	1.2956	48.206	47.763	49.059	0					72	44	2	0	0	0	0.0076656	1	9759	9759		74.396	32.302	1	98091			4362	4232	2995	3013	5799	5799		254			-0.01865844008705153
FPAVGMHSL	9	Oxidation (M)	_FPAVGM(Oxidation (M))HSL_		FPAVGM(1)HSL		FPAVGM(89)HSL	0	0	1		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.74176025390625	2	487.741845	973.469137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.496	1	46.496	45.996	46.996	0								0	0	0	7.4668E-05	1	9256	9256		89.427	41.081	1				4363	4232	2995	3013	5800	5800		254			-0.01865844008705153
FPAVGMHSL	9	Oxidation (M)	_FPAVGM(Oxidation (M))HSL_		FPAVGM(1)HSL		FPAVGM(78)HSL	0	0	1		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.74200439453125	2	487.741845	973.469137	0.22785	0.00011113	0.11669	5.6913E-05	0.34453	0.00016804	487.7418860403123	48.126	1.3943	48.206	47.685	49.079	0.080029					70	49	2	0	0	0	0.0065046	2	9636	9587;9636		77.984	43.882	1	91878			4364	4232	2995	3013	5801;5802	5802		254			-0.01865844008705153
FPAVGMHSL	9	Oxidation (M)	_FPAVGM(Oxidation (M))HSL_		FPAVGM(1)HSL		FPAVGM(85)HSL	0	0	1		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.74176025390625	2	487.741845	973.469137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.398	1	46.484	45.984	46.984	0.085617								0	0	0	0.001237	1	9097	9097		85.357	47.206	1				4365	4232	2995	3013	5803	5803		254			-0.01865844008705153
FPAYERVLL	9	Unmodified	_FPAYERVLL_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3137817382812	2	554.313492	1106.61243	0.67819	0.00037593	-0.58213	-0.00032269	0.096052	5.3243E-05	554.3131444451524	64.264	0.89137	64.264	64.054	64.945	0					98	31	4	0	0	0	0.018465	3	14651	14651;14695;14746		59.368	31.74	1	1403600			4366	2059	2996	3014	5804;5805;5806	5804					0.0633890637402601
FPAYERVLL	9	Unmodified	_FPAYERVLL_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.3133544921875	2	554.313492	1106.61243	0.65984	0.00036576	-0.43455	-0.00024087	0.22529	0.00012488	554.313143302296	64.246	0.93453	64.317	63.999	64.934	0.071014					79	33	3	0	0	0	0.018465	3	14475	14475;14526;14564		59.368	36.632	1	1485400			4367	2059	2996	3014	5807;5808;5809	5807					0.0633890637402601
FPAYERVVL	9	Unmodified	_FPAYERVVL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3060302734375	2	547.305667	1092.59678	0.49305	0.00026985	0.37532	0.00020541	0.86836	0.00047526	547.3059506198207	60.005	1.244	60.005	59.758	61.002	0					99	44	3	0	0	0	0.0097877	1	13366	13366		67.838	41.57	1	1070100			4368	1395	2997	3015	5810	5810					0.05418619857005069
FPAYERVVL	9	Unmodified	_FPAYERVVL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3060913085938	2	547.305667	1092.59678	0.23571	0.00012901	0.52624	0.00028801	0.76195	0.00041702	547.3059094495651	59.977	1.397	60.049	59.712	61.109	0.072338					101	50	3	0	0	0	0.038996	2	13172	13172;13217		45.74	25.325	1	729450			4369	1395	2997	3015	5811;5812	5811					0.05418619857005069
FPCFQVRV	8	Unmodified	_FPCFQVRV_					0	0	0			REV__MRPL53|p.V13A|1|0.09|ENSG00000204822|chr2:74472623-74472623|A/G|missense_variant	REV__MRPL53|p.V13A|1|0.09|ENSG00000204822|chr2:74472623-74472623|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.2798156738281	2	498.260205	994.505857	0.25527	0.00012719	2.3158	0.0011539	2.5711	0.0012811	498.26361249173414	49.178	0.39506	49.178	48.945	49.34	0					25	13	3	0	0	0	0.52502	1	10096	10096		9.3474	0.75416	1	44021	+		4370	10957	2998	3016	5813	5813					0.00838452607877116
FPDAREQEI	9	Unmodified	_FPDAREQEI_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7694702148438	2	552.769645	1103.52474	-0.0089812	-4.9645E-06	-0.23366	-0.00012916	-0.24264	-0.00013413	552.7695414998977	43.536	1.5052	43.536	42.764	44.269	0					190	52	4	0	0	0	0.0045224	7	8354	8212;8258;8304;8354;8397;8447;8490		90.135	44.114	1	524960			4371	3318	2999	3017	5814;5815;5816;5817;5818;5819;5820	5817					-0.022883392873836783
FPDAREQEI	9	Unmodified	_FPDAREQEI_					0	0	0		nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	nc|ENSG00000147140|Q15233-2|NONO	nc|ENSG00000147140|Q15233-2|NONO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.76953125	2	552.769645	1103.52474	0.15391	8.5075E-05	-0.14109	-7.799E-05	0.012817	7.0848E-06	552.7695049300888	43.403	1.3871	43.492	42.859	44.246	0.088924					183	50	4	0	0	0	0.010553	6	8217	8078;8123;8171;8217;8267;8314		65.474	35.691	1	454800			4372	3318	2999	3017	5821;5822;5823;5824;5825;5826	5824					-0.022883392873836783
FPDASFQVVL	10	Unmodified	_FPDASFQVVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7953491210938	2	561.795132	1121.57571	0.24327	0.00013667	0.3106	0.0001745	0.55387	0.00031116	561.795174889253	86.958	1.9808	86.958	86.104	88.085	0					191	77	3	0	0	0	0.035596	4	21585	21496;21541;21585;21630		61.602	41.956	1	2006300			4373	409	3000	3018	5827;5828;5829;5830	5829					0.019786097574751693
FPDASFQVVL	10	Unmodified	_FPDASFQVVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7954711914062	2	561.795132	1121.57571	0.28087	0.00015779	0.26143	0.00014687	0.5423	0.00030466	561.7951718868804	86.996	2.2911	87.024	86.167	88.458	0.027573					239	91	3	0	0	0	0.035596	6	21535	21366;21411;21454;21535;21576;21631		61.602	55.503	1	2385300			4374	409	3000	3018	5831;5832;5833;5834;5835;5836	5834					0.019786097574751693
FPDATTTAKQL	11	Unmodified	_FPDATTTAKQL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.8145141601562	2	596.814053	1191.61355	0.19319	0.0001153	0.2843	0.00016967	0.47749	0.00028497	596.81416089579	46.905	0.40019	46.905	46.744	47.144	0					35	14	3	0	0	0	0.07417	1	9365	9365		51.765	31.351	1	162240			4375	1753	3001	3019	5837	5837					0.025410759522856097
FPDATTTAKQL	11	Unmodified	_FPDATTTAKQL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.81396484375	2	596.814053	1191.61355	0.066683	3.9797E-05	0.22392	0.00013364	0.2906	0.00017343	596.8141385146203	46.775	0.29149	46.858	46.741	47.032	0.083096					19	11	2	0	0	0	0.13745	1	9215	9215		39.923	20.561	1	119360			4376	1753	3001	3019	5838	5838					0.025410759522856097
FPDAVKQIL	9	Unmodified	_FPDAVKQIL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8001708984375	2	515.800217	1029.58588	0.36667	0.00018913	-0.19865	-0.00010246	0.16802	8.6666E-05	515.7999245537652	61.731	0.70389	61.731	61.551	62.255	0					75	34	3	0	0	0	0.0047429	3	13934	13887;13934;13982		83.429	45.253	1	1108500			4377	3120	3002	3020	5839;5840;5841	5840					0.07227217482704873
FPDAVKQIL	9	Unmodified	_FPDAVKQIL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8001098632812	2	515.800217	1029.58588	0.33671	0.00017368	-0.16167	-8.339E-05	0.17504	9.0285E-05	515.7999886485496	61.609	0.75505	61.682	61.507	62.262	0.073421					86	40	3	0	0	0	0.02143	2	13766	13728;13766		57.249	28.762	1	743880			4378	3120	3002	3020	5842;5843	5843					0.07227217482704873
FPDEFHLQTL	10	Unmodified	_FPDEFHLQTL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8092041015625	2	623.808771	1245.60299	0.24688	0.000154	-0.25867	-0.00016136	-0.011792	-7.3558E-06	623.8084119335217	70.353	0.84477	70.353	70.043	70.888	0					91	31	4	0	0	0	0.037458	2	16601	16601;16646		61.09	37.3	1	926280			4379	745	3003	3021	5844;5845	5844					-0.009989067021479059
FPDEFHLQTL	10	Unmodified	_FPDEFHLQTL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.8084716796875	2	623.808771	1245.60299	0.38904	0.00024269	-0.41626	-0.00025966	-0.027219	-1.6979E-05	623.8083461684445	70.311	0.95238	70.372	70.046	70.999	0.060562					103	38	4	0	0	0	0.0034669	5	16359	16307;16359;16402;16451;16467		81.915	48.979	1	817970			4380	745	3003	3021	5846;5847;5848;5849;5850	5847					-0.009989067021479059
FPDELDTSFF	10	Unmodified	_FPDELDTSFF_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.803955078125	2	609.271687	1216.52882	0.29264	0.0001783	0.39494	0.00024063	0.68758	0.00041893	609.2717716736363	89.896	1.1671	89.93	89.386	90.553	0.034065					72	46	3	0	0	0	0.31496	1	22336	22336		13.906	9.15	1	308230			4381	384	3004	3022	5851	5851					-0.07078294584357536
FPDELDTSFF	10	Unmodified	_FPDELDTSFF_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	609.271687	1216.52882	0.26491	0.0001614	0.53989	0.00032894	0.8048	0.00049034	609.2718738675682	90.044	0.64348	90.044	89.475	90.118	0	0.057041	0.00010519	NaN	13.906	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297600			4382	384	3004	3022							-0.07078294584357536
FPDELEEML	9	Oxidation (M)	_FPDELEEM(Oxidation (M))L_		FPDELEEM(1)L		FPDELEEM(44)L	0	0	1		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7523803710938	2	569.752272	1137.48999	0.55457	0.00031597	-0.29451	-0.0001678	0.26006	0.00014817	569.7518683724953	70.975	0.72673	71.034	70.619	71.346	0.058578					33	27	2	0	0	0	0.047633	1	16527	16527		43.858	22.112	1	94351			4383	587	3005	3023	5852	5852		30			-0.07325343210368374
FPDFFTRVAL	10	Unmodified	_FPDFFTRVAL_					0	0	0		ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.3259887695312	2	606.824224	1211.63389	1.0316	0.00062597	-0.73829	-0.00044801	0.29326	0.00017796	606.8236203804471	81.778	0.54672	81.778	81.545	82.092	0					41	18	3	0	0	0	0.1208	1	20002	20002		42.835	25.393	1	230760			4384	5218	3006	3024	5853	5853					0.0365429140276774
FPDFFTRVAL	10	Unmodified	_FPDFFTRVAL_					0	0	0		ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8243408203125	2	606.824224	1211.63389	0.80052	0.00048578	-0.41646	-0.00025272	0.38407	0.00023306	606.8237985822691	81.773	0.56329	81.795	81.57	82.133	0.021866					37	19	3	0	0	0	0.084799	1	19839	19839		48.073	34.458	1	278970			4385	5218	3006	3024	5854	5854					0.0365429140276774
FPDFPTPGVVF	11	Unmodified	_FPDFPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.8110961914062	2	611.810782	1221.60701	0.12515	7.6566E-05	0.46902	0.00028695	0.59417	0.00036352	611.8111237309508	95.483	2.9276	95.483	94.511	97.438	0					462	136	5	0	0	0	0.0043137	9	24173	23946;23991;24077;24123;24173;24211;24259;24299;24337		103.35	84.097	1	11797000			4386	5432	3007	3025	5855;5856;5857;5858;5859;5860;5861;5862;5863	5859					0.005071827915571703
FPDFPTPGVVF	11	Unmodified	_FPDFPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.8110961914062	2	611.810782	1221.60701	0.16547	0.00010123	0.38007	0.00023253	0.54554	0.00033376	611.8110710153013	95.48	1.4916	95.518	94.545	96.036	0.038872					269	66	5	0	0	0	0.0043137	8	24018	23769;23811;23886;23932;23975;24018;24059;24108		103.35	80.617	1	11544000			4387	5432	3007	3025	5864;5865;5866;5867;5868;5869;5870;5871	5869					0.005071827915571703
FPDFPTPGVVF	11	Unmodified	_FPDFPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.8110961914062	2	611.810782	1221.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.916	1	95.956	95.456	96.456	0.039772								0	0	0	0.0023606	1	24147	24147		75.761	56.504	1				4388	5432	3007	3025	5872	5872					0.005071827915571703
FPDFQDSVQTL	11	Unmodified	_FPDFQDSVQTL_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;ENST00000458074.1_1_X:150394703-150395165:-|nuORF	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.8087158203125	2	648.808968	1295.60338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.793	1	78.793	78.293	79.293	0								0	0	0	0.25199	1	19095	19095		20.581	6.9661	1				4389	2908	3008	3026	5873	5873					-0.032595317729374074
FPDFVTIDHF	10	Unmodified	_FPDFVTIDHF_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.800048828125	2	619.298039	1236.58152	-0.11232	-6.956E-05	1.3233	0.00081954	1.211	0.00074998	619.8004326744356	79.209	0.6963	79.236	79.014	79.71	0.026436					38	24	2	0	0	0	0.30966	1	19144	19144		21.537	13.928	1	131620			4390	1400	3009	3027	5874	5874					-0.027302917308816177
FPDFVTIDHF	10	Unmodified	_FPDFVTIDHF_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	619.298039	1236.58152	-0.013575	-8.4069E-06	0.59123	0.00036615	0.57766	0.00035774	619.2983802999732	79.275	0.54231	79.275	79.047	79.59	0	0.019661	-0.0003702	NaN	21.537	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123570			4391	1400	3009	3027							-0.027302917308816177
FPDFVWTL	8	Unmodified	_FPDFVWTL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7606811523438	2	512.760561	1023.50657	0.43285	0.00022195	-0.59654	-0.00030588	-0.16369	-8.3933E-05	512.7603158663497	100.38	0.93446	100.38	100.02	100.95	0					103	54	3	0	0	0	0.43379	2	25619	25619;25706		21.747	7.6917	1	121470			4392	1994	3010	3028	5875;5876	5875					-0.004244294714339958
FPDFVWTL	8	Unmodified	_FPDFVWTL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.760986328125	2	512.760561	1023.50657	0.49779	0.00025525	-0.65794	-0.00033737	-0.16015	-8.212E-05	512.7603182418272	100.28	1.0383	100.32	99.913	100.95	0.042839					82	59	2	0	0	0	0.43379	5	25526	25433;25474;25494;25526;25570		21.747	9.506	1	95452			4393	1994	3010	3028	5877;5878;5879;5880;5881	5880					-0.004244294714339958
FPDGASHL	8	Unmodified	_FPDGASHL_					0	0	0		SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5745849609375	2	422.20341	842.392267	0.11762	4.9661E-05	0.040733	1.7198E-05	0.15836	6.6859E-05	422.2033573262403	37.309	0.69806	37.394	37.046	37.744	0.084476					39	24	2	0	0	0	0.3576	1	6376	6376		2.3027	1.5091	1	27677			4394	13417	3011	3029	5882	5882					-0.035233192335226704
FPDGASHL	8	Unmodified	_FPDGASHL_					0	0	0		SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	422.20341	842.392267	0.44018	0.00018585	-0.51097	-0.00021574	-0.070795	-2.989E-05	422.20316645079987	37.309	0.71946	37.309	37.038	37.758	0	-0.042606	-0.00027068	NaN	2.3027	38	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41227			4395	13417	3011	3029							-0.035233192335226704
FPDGSFIQNL	10	Unmodified	_FPDGSFIQNL_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2826538085938	2	569.282389	1136.55022	0.57916	0.00032971	0.19149	0.00010901	0.77065	0.00043872	569.2823611383278	82.109	1.7045	82.109	81.374	83.079	0					99	59	2	0	0	0	0.11267	2	20054	20054;20103		43.772	12.504	1	233540			4396	4447	3012	3030	5883;5884	5883					-0.012588647649636187
FPDGSFIQNL	10	Unmodified	_FPDGSFIQNL_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2828369140625	2	569.282389	1136.55022	0.31517	0.00017942	0.42224	0.00024037	0.73741	0.00041979	569.282476688859	82.167	1.622	82.189	81.421	83.043	0.021866					105	58	2	0	0	0	0.17573	1	19887	19887		36.506	11.107	1	221000			4397	4447	3012	3030	5885	5885					-0.012588647649636187
FPDHVDTQHL	10	Unmodified	_FPDHVDTQHL_					0	0	0		nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-2|TTC8	nc|ENSG00000165533|Q8TAM2-2|TTC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.86224365234375	3	403.528005	1207.56219	-0.19946	-8.0488E-05	-0.15473	-6.2437E-05	-0.35419	-0.00014293	403.52791352715525	42.421	0.84324	42.421	42.131	42.974	0					61	28	3	0	0	0	0.37856	1	8073	8073		14.171	9.2737	1	94079			4398	4090	3013	3031	5886	5886					-0.033292480217596676
FPDHVDTQHL	10	Unmodified	_FPDHVDTQHL_					0	0	0		nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-2|TTC8	nc|ENSG00000165533|Q8TAM2-2|TTC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.8627014160156	3	403.528005	1207.56219	-0.44674	-0.00018027	0.39191	0.00015814	-0.054832	-2.2126E-05	403.5280717449242	42.371	0.67364	42.461	42.138	42.812	0.089764					44	24	2	0	0	0	0.32416	2	7901	7901;7950		19.987	11.831	1	76161			4399	4090	3013	3031	5887;5888	5887					-0.033292480217596676
FPDIPESVTC	10	Unmodified	_FPDIPESVTC_					0	0	0		ENST00000583108.5_1_17:65733963-65734484:+|nuORF;ENSG00000130935|ENST00000253247|NOL11	ENST00000583108.5_1_17:65733963-65734484:+|nuORF	ENST00000583108.5_1_17:65733963-65734484:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7761840820312	2	554.254982	1106.49541	0.37615	0.00020848	-0.38123	-0.0002113	-0.0050809	-2.8161E-06	554.2559140390746	73.075	0.50185	73.128	72.836	73.338	0.052567					28	17	2	0	0	0	0.31667	1	17139	17139		8.7454	3.0136	1	95213			4400	2504	3014	3032	5889	5889					-0.05357619627875465
FPDKVAIQL	9	Unmodified	_FPDKVAIQL_					0	0	0		nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	nc|ENSG00000068976|P11217-2|PYGM	nc|ENSG00000068976|P11217-2|PYGM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8003540039062	2	515.800217	1029.58588	0.50335	0.00025963	0.44658	0.00023035	0.94994	0.00048998	515.8003034683944	62.908	1.5919	62.908	62.227	63.819	0					155	58	3	0	0	0	0.0039507	7	14222	14145;14155;14178;14222;14270;14316;14362		103.82	13.689	1	1436200			4401	739	3015	3033	5890;5891;5892;5893;5894;5895;5896	5893					0.07227217482704873
FPDKVAIQL	9	Unmodified	_FPDKVAIQL_					0	0	0		nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	nc|ENSG00000068976|P11217-2|PYGM	nc|ENSG00000068976|P11217-2|PYGM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8001708984375	2	515.800217	1029.58588	0.4232	0.00021829	0.34124	0.00017601	0.76444	0.0003943	515.800253870731	62.839	1.5694	62.912	62.261	63.831	0.072697					151	59	3	0	0	0	0.0043442	7	13994	13994;14040;14086;14130;14174;14216;14268		96.936	22.736	1	1220100			4402	739	3015	3033	5897;5898;5899;5900;5901;5902;5903	5897					0.07227217482704873
FPDLAGAPFYF	11	Unmodified	_FPDLAGAPFYF_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.802001953125	2	622.802957	1243.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.049	1	96.089	95.589	96.589	0.039772								0	0	0	0.27893	1	24187	24187		17.113	6.289	1				4403	4687	3016	3034	5904	5904					-0.020691037254891853
FPDLFSEQL	9	Unmodified	_FPDLFSEQL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2717895507812	2	548.27149	1094.52843	0.56706	0.00031091	0.20401	0.00011186	0.77108	0.00042276	548.2715078482083	87.968	1.1918	87.968	87.708	88.9	0					91	45	4	0	0	0	0.00061878	3	21904	21857;21904;21950		129.77	83.751	1	1442100			4404	5429	3017	3035	5905;5906;5907	5906					-0.015056695135399423
FPDLFSEQL	9	Unmodified	_FPDLFSEQL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2718505859375	2	548.27149	1094.52843	0.37264	0.00020431	0.24204	0.0001327	0.61468	0.00033701	548.271476111379	87.98	0.70219	88.01	87.709	88.411	0.030037					63	24	3	0	0	0	0.00061878	3	21730	21680;21730;21774		129.77	83.751	1	1420700			4405	5429	3017	3035	5908;5909;5910	5909					-0.015056695135399423
FPDLFVADFCS	11	Unmodified	_FPDLFVADFCS_					0	0	0			REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.8585510253906	3	420.858363	1259.55326	0.44001	0.00018518	0.0072153	3.0366E-06	0.44723	0.00018822	420.85838082492535	95.567	1.3591	95.567	94.747	96.106	0					139	63	3	0	0	0	0.37201	3	24137	24054;24093;24137		9.7643	0	1	495560	+		4406	11069	3018	3036	5911;5912;5913	5913					-0.06613357702462963
FPDLFVADFCS	11	Unmodified	_FPDLFVADFCS_					0	0	0			REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.8583984375	3	420.858363	1259.55326	0.060137	2.5309E-05	0.3845	0.00016182	0.44463	0.00018713	420.85848192498383	95.404	1.1945	95.443	94.842	96.036	0.038872					131	54	4	0	0	0	0.37201	2	23918	23918;23964		9.7643	2.6625	1	386780	+		4407	11069	3018	3036	5914;5915	5914					-0.06613357702462963
FPDLPFTDEL	10	Unmodified	_FPDLPFTDEL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2899780273438	2	597.289879	1192.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.629	1	94.629	94.129	95.129	0								0	0	0	0.01769	1	23912	23912		75.761	41.658	1				4408	4682	3019	3037	5916	5916					-0.023374176875904595
FPDLPFTDEL	10	Unmodified	_FPDLPFTDEL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2897338867188	2	597.289879	1192.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.812	1	94.812	94.312	95.312	0								0	0	0	0.065761	1	23967	23967		53.833	26.949	1				4409	4682	3019	3037	5917	5917					-0.023374176875904595
FPDLPFTDEL	10	Unmodified	_FPDLPFTDEL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2900390625	2	597.289879	1192.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.028	1	95.028	94.528	95.528	0								0	0	0	0.21884	1	24033	24033		27.629	12.38	1				4410	4682	3019	3037	5918	5918					-0.023374176875904595
FPDLPFTDEL	10	Unmodified	_FPDLPFTDEL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2894897460938	2	597.289879	1192.56521	0.1495	8.9293E-05	0.20864	0.00012462	0.35814	0.00021391	597.2900183635735	94.486	1.1255	94.524	94.02	95.145	0.038086					90	47	2	0	0	0	0.021784	4	23742	23670;23742;23789;23882		66.457	41.466	1	355060			4411	4682	3019	3037	5919;5920;5921;5922	5920					-0.023374176875904595
FPDLVEGLVL	10	Unmodified	_FPDLVEGLVL_					0	0	0		nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;ENST00000565981.5_1_16:58539993-58546041:+|nuORF;ENST00000561720.5_1_16:58529427-58541082:+|nuORF;nc|ENSG00000103034|Q9ULP0-4|NDRG4;ENSG00000103034|ENST00000570248|NDRG4	nc|ENSG00000103034|Q9ULP0-2|NDRG4	nc|ENSG00000103034|Q9ULP0-2|NDRG4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.3134765625	2	551.313158	1100.61176	0.60785	0.00033512	0.022415	1.2358E-05	0.63027	0.00034747	551.312889970403	99.043	0.37334	99.043	98.882	99.255	0					47	29	2	0	0	0	0.38912	1	25220	25220		13.042	6.8367	1	98904			4412	7473	3020	3038	5923	5923					0.06548066934328745
FPDLVEGLVL	10	Unmodified	_FPDLVEGLVL_					0	0	0		nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;ENST00000565981.5_1_16:58539993-58546041:+|nuORF;ENST00000561720.5_1_16:58529427-58541082:+|nuORF;nc|ENSG00000103034|Q9ULP0-4|NDRG4;ENSG00000103034|ENST00000570248|NDRG4	nc|ENSG00000103034|Q9ULP0-2|NDRG4	nc|ENSG00000103034|Q9ULP0-2|NDRG4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.313232421875	2	551.313158	1100.61176	0.66779	0.00036816	-0.12635	-6.9659E-05	0.54144	0.0002985	551.3128157800802	98.988	0.29561	99.03	98.997	99.293	0.041931					31	21	2	0	0	0	0.42335	1	25085	25085		9.3831	3.6513	1	200140			4413	7473	3020	3038	5924	5924					0.06548066934328745
FPDLYEPIL	9	Unmodified	_FPDLYEPIL_					0	0	0		nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3327026367188	2	553.792058	1105.56956	0.49448	0.00027384	0.18126	0.00010038	0.67574	0.00037422	553.7925183804889	91.201	1.3281	91.201	90.256	91.584	0					134	48	4	0	0	0	0.18479	1	22815	22815		26.884	18.973	1	617640			4414	4377	3021	3039	5925	5925					0.021000915259492103
FPDPAGKLNQF	11	Unmodified	_FPDPAGKLNQF_					0	0	0		ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.31689453125	2	617.316763	1232.61897	-0.027317	-1.6864E-05	0.32481	0.00020051	0.29749	0.00018365	617.3167634490306	60.196	1.1178	60.196	60.017	61.135	0					96	40	3	0	0	0	0.098164	3	13413	13413;13458;13503		46.022	14.754	1	776950			4415	506	3022	3040	5926;5927;5928	5926					0.011967995347276883
FPDPAGKLNQF	11	Unmodified	_FPDPAGKLNQF_					0	0	0		ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.3167114257812	2	617.316763	1232.61897	-0.25237	-0.00015579	0.34077	0.00021036	0.0884	5.4571E-05	617.3169042675975	59.332	0.97375	59.404	59.043	60.016	0.072338					129	38	4	0	0	0	1.0481E-08	5	13002	12955;13002;13050;13098;13160		169.92	111.24	1	3659200			4416	506	3022	3040	5929;5930;5931;5932;5933	5930					0.011967995347276883
FPDPAGKLNQF	11	Unmodified	_FPDPAGKLNQF_					0	0	0		ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.31640625	2	617.316763	1232.61897	-0.24156	-0.00014912	0.32859	0.00020285	0.087036	5.3729E-05	617.3167807278045	60.131	1.0634	60.203	59.988	61.052	0.072338					92	37	4	0	0	0	0.08336	3	13203	13203;13254;13309		49.527	26.869	1	721250			4417	506	3022	3040	5934;5935;5936	5934					0.011967995347276883
FPDPAGKLNQF	11	Unmodified	_FPDPAGKLNQF_					0	0	0		ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	617.316763	1232.61897	-0.301	-0.00018581	0.44733	0.00027614	0.14633	9.0331E-05	617.3169872231655	59.461	0.98225	59.461	59.062	60.045	0	0.028591	5.8997E-05	NaN	169.92	136	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4403200			4418	506	3022	3040							0.011967995347276883
FPDPDWTDP	9	Unmodified	_FPDPDWTDP_					0	0	0			REV__ENST00000417626.6_1_3:50325358-50325592:-|nuORF	REV__ENST00000417626.6_1_3:50325358-50325592:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7904663085938	2	545.229822	1088.44509	0.19328	0.00010538	2.8955	0.0015787	3.0888	0.0016841	545.2311488457129	52.234	0.44106	52.234	52.043	52.484	0					15	14	2	0	0	0	0.25579	1	10990	10990		4.3292	0	1	62606	+		4419	11804	3023	3041	5937	5937					-0.09559405961385892
FPDPNVKYVF	10	Unmodified	_FPDPNVKYVF_					0	0	0		ENSG00000158773|ENST00000368021|USF1;ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF	ENSG00000158773|ENST00000368021|USF1	ENSG00000158773|ENST00000368021|USF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.3167724609375	2	613.316232	1224.61791	0.47536	0.00029155	0.50672	0.00031078	0.98208	0.00060232	613.3166208783474	66.587	2.1189	66.587	65.879	67.998	0					191	80	3	0	0	0	0.00044336	8	15340	15247;15297;15340;15365;15411;15461;15503;15552		121.35	78.007	1	2665500			4420	3704	3024	3042	5938;5939;5940;5941;5942;5943;5944;5945	5940					0.014585851658239335
FPDPNVKYVF	10	Unmodified	_FPDPNVKYVF_					0	0	0		ENSG00000158773|ENST00000368021|USF1;ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF	ENSG00000158773|ENST00000368021|USF1	ENSG00000158773|ENST00000368021|USF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.3167724609375	2	613.316232	1224.61791	0.4486	0.00027513	0.53009	0.00032511	0.97869	0.00060024	613.3166186154579	66.421	2.0507	66.488	65.971	68.022	0.066872					197	74	3	0	0	0	0.0054524	4	15167	15167;15220;15262;15307		100.71	62.533	1	2748600			4421	3704	3024	3042	5946;5947;5948;5949	5946					0.014585851658239335
FPDPRGLYHF	10	Unmodified	_FPDPRGLYHF_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.8851623535156	3	416.876857	1247.60874	0.55369	0.00023082	-0.21199	-8.8375E-05	0.34169	0.00014244	416.87655616037864	62.302	0.9086	62.302	61.974	62.883	0					61	33	3	0	0	0	0.44253	4	14188	14098;14142;14188;14237		6.1918	3.6934	1	244200			4422	5515	3025	3043	5950;5951;5952;5953	5952					-0.005157633998123856
FPDPSDFDRC	10	Unmodified	_FPDPSDFDRC_					0	0	0		ENSG00000213626|ENST00000395323|LBH	ENSG00000213626|ENST00000395323|LBH	ENSG00000213626|ENST00000395323|LBH	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2877807617188	2	599.745313	1197.47607	0.32002	0.00019193	0.30408	0.00018237	0.62409	0.0003743	599.7455700821287	59.685	0.81571	59.685	59.336	60.152	0					48	31	2	0	0	0	0.31602	1	13284	13284		12.175	8.5783	1	124030			4423	5549	3026	3044	5954	5954					-0.11476575918777598
FPDPVDSGTQM	11	Oxidation (M)	_FPDPVDSGTQM(Oxidation (M))_		FPDPVDSGTQM(1)		FPDPVDSGTQM(44)	0	0	1		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.2584228515625	2	605.258253	1208.50195	0.50271	0.00030427	0.048176	2.9159E-05	0.55088	0.00033343	605.2582260813045	53.258	0.51495	53.258	52.975	53.49	0					48	21	3	0	0	0	0.11131	1	11312	11312		43.982	37.259	1	153150			4424	4696	3027	3045	5955	5955		278			-0.0939572646718716
FPDPVVQWL	9	Unmodified	_FPDPVVQWL_					0	0	0		ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2843017578125	2	550.792392	1099.57023	0.62758	0.00034566	-0.047554	-2.6192E-05	0.58002	0.00031947	550.7922176697475	93.428	0.61256	93.428	93.157	93.77	0					49	23	3	0	0	0	0.0569	3	23570	23516;23570;23614		41.84	20.093	1	300080			4425	3197	3028	3046	5956;5957;5958	5957					0.024429309656625264
FPDPVVQWL	9	Unmodified	_FPDPVVQWL_					0	0	0		ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2843627929688	2	550.792392	1099.57023	0.60152	0.00033131	-0.13565	-7.4714E-05	0.46587	0.0002566	550.7921254128996	93.409	0.62503	93.446	93.195	93.82	0.037369					44	25	2	0	0	0	0.17428	1	23417	23417		21.537	5.6898	1	250470			4426	3197	3028	3046	5959	5959					0.024429309656625264
FPDPWNAKF	9	Unmodified	_FPDPWNAKF_					0	0	0		ENST00000568654.1_1_18:33760351-33767288:-|nuORF	ENST00000568654.1_1_18:33760351-33767288:-|nuORF	ENST00000568654.1_1_18:33760351-33767288:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2890014648438	2	561.274367	1120.53418	0.54137	0.00030386	1.2827	0.00071996	1.8241	0.0010238	561.2752981332337	68.253	0.45381	68.316	68.16	68.614	0.063507					24	16	2	0	0	0	0.27929	1	15698	15698		9.3831	0	1	104830			4427	7185	3029	3047	5960	5960					-0.02126526211213786
FPDQFFTVL	9	Unmodified	_FPDQFFTVL_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2843017578125	2	557.2844	1112.55425	0.47036	0.00026213	0.12532	6.9838E-05	0.59568	0.00033196	557.2841738248235	94.843	0.86914	94.843	94.343	95.212	0					94	36	3	0	0	0	0.095436	1	23956	23956		33.445	11.698	1	575750			4428	5062	3030	3048	5961	5961					0.002472247287414575
FPDQFFTVL	9	Unmodified	_FPDQFFTVL_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2844848632812	2	557.2844	1112.55425	0.49028	0.00027322	0.043921	2.4477E-05	0.5342	0.0002977	557.2842039782386	94.739	0.87291	94.777	94.343	95.216	0.038086					68	35	2	0	0	0	0.098463	1	23774	23774		32.786	8.1118	1	439850			4429	5062	3030	3048	5962	5962					0.002472247287414575
FPDQFFTVL	9	Unmodified	_FPDQFFTVL_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	557.2844	1112.55425	0.47036	0.00026213	0.12532	6.9838E-05	0.59568	0.00033196	557.2841738248235	94.843	0.86914	94.843	94.343	95.212	0	0.032907	4.4824E-05	NaN	33.445	94	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575750			4430	5062	3030	3048							0.002472247287414575
FPDQLYDAV	9	Unmodified	_FPDQLYDAV_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2557983398438	2	534.25584	1066.49713	0.47695	0.00025481	-0.065497	-3.4992E-05	0.41145	0.00021982	534.255709982571	71.188	1.0736	71.188	70.737	71.811	0					82	37	3	0	0	0	0.088609	1	16743	16743		34.932	8.0484	1	423620			4431	4622	3031	3049	5963	5963					-0.03346242547627298
FPDQLYDAV	9	Unmodified	_FPDQLYDAV_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	534.25584	1066.49713	0.70268	0.00037541	-0.24107	-0.00012879	0.46161	0.00024662	534.2556170716734	71.099	0.87673	71.158	70.775	71.652	0.058578	-0.015301	-9.6178E-05	NaN	34.932	72	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464630			4432	4622	3031	3049							-0.03346242547627298
FPDQLYDAVF	10	Unmodified	_FPDQLYDAVF_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.790283203125	2	607.790047	1213.56554	0.45782	0.00027826	0.12697	7.7169E-05	0.58478	0.00035542	607.7900401590956	87.276	1.0723	87.276	86.876	87.948	0					99	42	3	0	0	0	0.28859	5	21631	21587;21631;21675;21726;21769		23.79	9.8837	1	1260800			4433	4622	3032	3050	5964;5965;5966;5967;5968	5965					-0.03269997967777272
FPDQLYDAVF	10	Unmodified	_FPDQLYDAVF_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7904052734375	2	607.790047	1213.56554	0.49518	0.00030097	0.19487	0.00011844	0.69005	0.00041941	607.7900361744594	87.154	1.0217	87.182	86.882	87.903	0.027573					96	41	3	0	0	0	0.23357	2	21508	21465;21508		29.841	11.694	1	1011800			4434	4622	3032	3050	5969;5970	5970					-0.03269997967777272
FPDQVAIQL	9	Unmodified	_FPDQVAIQL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7821655273438	2	515.782025	1029.5495	0.38989	0.0002011	-0.051975	-2.6808E-05	0.33792	0.00017429	515.7820164549736	76.739	1.9233	76.739	76.253	78.176	0					209	74	5	0	0	0	0.0016252	10	18546	18353;18401;18446;18495;18546;18597;18635;18678;18737;18797		118.07	48.261	1	6136700			4435	1204	3033	3051	5971;5972;5973;5974;5975;5976;5977;5978;5979;5980	5975					0.035903405860153725
FPDQVAIQL	9	Unmodified	_FPDQVAIQL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7822265625	2	515.782025	1029.5495	0.425	0.00021921	-0.067951	-3.5048E-05	0.35705	0.00018416	515.7819853481315	76.857	1.4743	76.896	76.205	77.68	0.03923					166	58	4	0	0	0	0.0043591	8	18274	18181;18230;18274;18321;18365;18411;18455;18498		96.367	37.688	1	6654600			4436	1204	3033	3051	5981;5982;5983;5984;5985;5986;5987;5988	5983					0.035903405860153725
FPDQVQDLVF	10	Unmodified	_FPDQVQDLVF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.3032836914062	2	604.303321	1206.59209	0.76935	0.00046492	-0.32558	-0.00019675	0.44377	0.00026817	604.3029718936297	85.349	0.95119	85.349	84.898	85.849	0					90	38	3	0	0	0	0.34796	5	21105	21014;21061;21105;21150;21199		17.443	5.9479	1	447360			4437	1964	3034	3052	5989;5990;5991;5992;5993	5991					-0.002943090764574663
FPDQVQDLVF	10	Unmodified	_FPDQVQDLVF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.3037109375	2	604.303321	1206.59209	0.94938	0.00057371	-0.35795	-0.00021631	0.59143	0.0003574	604.3029210399025	85.362	0.82085	85.385	84.95	85.771	0.023132					95	32	4	0	0	0	0.3639	4	20914	20865;20914;20960;21009		15.739	8.1297	1	496060			4438	1964	3034	3052	5994;5995;5996;5997	5995					-0.002943090764574663
FPDRIDECP	9	Unmodified	_FPDRIDECP_					0	0	0		nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912-2|TNK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.244873046875	2	546.244949	1090.47534	0.03575	1.9528E-05	0.10314	5.6339E-05	0.13889	7.5867E-05	546.244871595993	34.147	2.1833	34.147	33.378	35.561	0					187	81	3	0	0	0	0.098463	2	5629	5629;5681		32.786	4.8925	1	105760			4439	7456	3035	3053	5998;5999	5998					-0.06627370567844082
FPDRIDECP	9	Unmodified	_FPDRIDECP_					0	0	0		nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912-2|TNK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2444458007812	2	546.244949	1090.47534	0.25091	0.00013706	0.33178	0.00018124	0.58269	0.00031829	546.2449719361254	36.717	2.5374	36.717	35.736	38.274	0					199	95	3	0	0	0	0.098463	2	6215	6167;6215		32.786	5.1569	1	105960			4440	7456	3035	3053	6000;6001	6001					-0.06627370567844082
FPDRIDECP	9	Unmodified	_FPDRIDECP_					0	0	0		nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912-2|TNK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2448120117188	2	546.244949	1090.47534	0.070081	3.8281E-05	0.006811	3.7205E-06	0.076891	4.2002E-05	546.2448385593	33.975	1.8704	34.052	33.449	35.32	0.076244					176	78	3	0	0	0	0.28472	1	5584	5584		8.7454	3.0136	1	88459			4441	7456	3035	3053	6002	6002					-0.06627370567844082
FPDRIDECP	9	Unmodified	_FPDRIDECP_					0	0	0		nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912-2|TNK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2451171875	2	546.244949	1090.47534	0.26335	0.00014386	0.19288	0.00010536	0.45623	0.00024921	546.244997482522	36.779	2.8743	36.861	35.684	38.559	0.081711					190	109	3	0	0	0	0.19398	1	6028	6028		19.257	5.3509	1	82669			4442	7456	3035	3053	6003	6003					-0.06627370567844082
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(170)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7763671875	2	578.776416	1155.53828	0.37331	0.00021606	-0.15092	-8.7349E-05	0.22239	0.00012871	578.7763549837921	53.376	1.5797	53.376	52.872	54.451	0					180	60	4	0	0	0	5.5843E-09	5	11300	11257;11300;11348;11398;11440		166.77	106.7	1	1252500			4443	1434	3036	3054	6004;6005;6006;6007;6008	6005		89			-0.03326804779817394
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(170)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7766723632812	2	578.776416	1155.53828	0.55354	0.00032037	0.025832	1.4951E-05	0.57937	0.00033533	578.7764285005298	55.377	3.7657	55.377	54.451	58.217	0					360	142	5	0	0	0	5.5843E-09	5	11860	11719;11773;11818;11860;11907		166.77	98.688	1	5194100			4444	1434	3036	3054	6009;6010;6011;6012;6013	6012		89			-0.03326804779817394
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(150)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7765502929688	2	578.776416	1155.53828	0.52395	0.00030325	-0.27035	-0.00015647	0.2536	0.00014678	578.7762715101417	53.357	1.5535	53.423	52.932	54.485	0.06543					187	68	4	0	0	0	3.8022E-06	5	11185	11101;11142;11185;11226;11276		154.75	104.82	1	1133200			4445	1434	3036	3054	6014;6015;6016;6017;6018	6016		89			-0.03326804779817394
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(88)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7766723632812	2	578.776416	1155.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.708	1	54.773	54.273	55.273	0.065128								0	0	0	0.00025336	1	11612	11612		88.364	53.962	1				4446	1434	3036	3054	6019	6019		89			-0.03326804779817394
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(140)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7767333984375	2	578.776416	1155.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.828	1	54.893	54.393	55.393	0.065128								0	0	0	2.8238E-14	1	11649	11649		143.21	93.28	1				4447	1434	3036	3054	6020	6020		89			-0.03326804779817394
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(140)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7767333984375	2	578.776416	1155.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.981	1	55.046	54.546	55.546	0.065128								0	0	0	2.8238E-14	1	11696	11696		143.21	84.534	1				4448	1434	3036	3054	6021	6021		89			-0.03326804779817394
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(170)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.776611328125	2	578.776416	1155.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.136	1	55.201	54.701	55.701	0.065128								0	0	0	1.2533E-26	1	11742	11742		166.77	96.437	1				4449	1434	3036	3054	6022	6022		89			-0.03326804779817394
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(57)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.776611328125	2	578.776416	1155.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.743	1	55.808	55.308	56.308	0.065128								0	0	0	0.030558	1	11927	11927		57.249	11.509	1				4450	1434	3036	3054	6023	6023		89			-0.03326804779817394
FPDRIMNTF	9	Unmodified	_FPDRIMNTF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.778564453125	2	570.778959	1139.54336	0.33474	0.00019106	-0.5712	-0.00032603	-0.23646	-0.00013497	570.7786399951864	62.318	1.0486	62.318	61.921	62.969	0					88	39	3	0	0	0	1.9628E-05	2	14046	14046;14106		139.78	99.825	1	595960			4451	1434	3036	3055	6024;6025	6024					-0.020825009171858255
FPDRIMNTF	9	Unmodified	_FPDRIMNTF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000104833|ENST00000264071|TUBB4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7786254882812	2	570.778959	1139.54336	0.31278	0.00017853	-0.45635	-0.00026048	-0.14357	-8.1946E-05	570.7787144814849	62.202	0.87756	62.276	61.953	62.83	0.073421					76	31	3	0	0	0	0.00069152	2	13884	13884;13945		128.57	88.616	1	572720			4452	1434	3036	3055	6026;6027	6026					-0.020825009171858255
FPDSRSPGL	9	Unmodified	_FPDSRSPGL_					0	0	0		ENSG00000156463|ENST00000359120|SH3RF2	ENSG00000156463|ENST00000359120|SH3RF2	ENSG00000156463|ENST00000359120|SH3RF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.9355163574219	2	488.248349	974.482145	-0.42614	-0.00020806	0.91015	0.00044438	0.48402	0.00023632	488.24884285973627	42.926	1.4184	42.926	42.22	43.638	0					68	49	2	0	0	0	0.24366	1	8183	8183		13.042	5.1323	1	85655			4453	3624	3037	3056	6028	6028					-0.006116896249409365
FPDSRSPGL	9	Unmodified	_FPDSRSPGL_					0	0	0		ENSG00000156463|ENST00000359120|SH3RF2	ENSG00000156463|ENST00000359120|SH3RF2	ENSG00000156463|ENST00000359120|SH3RF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.249267578125	2	488.248349	974.482145	-0.28278	-0.00013807	0.89032	0.0004347	0.60755	0.00029663	488.24889003221756	42.923	1.426	43.012	42.316	43.742	0.089764					74	52	2	0	0	0	0.2546	1	8136	8136		12.241	5.5175	1	78826			4454	3624	3037	3056	6029	6029					-0.006116896249409365
FPDSSTPFSLF	11	Unmodified	_FPDSSTPFSLF_					0	0	0		ENST00000522067.1_1_1:233160928-233161282:-|nuORF	ENST00000522067.1_1_1:233160928-233161282:-|nuORF	ENST00000522067.1_1_1:233160928-233161282:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.86676025390625	3	415.532645	1243.5761	0.45069	0.00018728	-0.27111	-0.00011265	0.17958	7.4622E-05	415.8668715185461	95.509	0.62242	95.509	94.919	95.541	0					47	27	2	0	0	0	0.38057	1	24139	24139		7.0371	2.6309	1	384210			4455	6965	3038	3057	6030	6030					-0.035940153133424246
FPDSSTPFSLF	11	Unmodified	_FPDSSTPFSLF_					0	0	0		ENST00000522067.1_1_1:233160928-233161282:-|nuORF	ENST00000522067.1_1_1:233160928-233161282:-|nuORF	ENST00000522067.1_1_1:233160928-233161282:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.195556640625	3	415.532645	1243.5761	0.43919	0.0001825	-0.53382	-0.00022182	-0.094636	-3.9325E-05	415.8667026402065	95.622	0.418	95.622	95.56	95.978	0					30	20	2	0	0	0	0.31023	1	24237	24237		2.2527	0	1	177310			4456	6965	3038	3057	6031	6031					-0.035940153133424246
FPDSSTPFSLF	11	Unmodified	_FPDSSTPFSLF_					0	0	0		ENST00000522067.1_1_1:233160928-233161282:-|nuORF	ENST00000522067.1_1_1:233160928-233161282:-|nuORF	ENST00000522067.1_1_1:233160928-233161282:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.5328369140625	3	415.532645	1243.5761	0.046294	1.9237E-05	-0.017348	-7.2085E-06	0.028946	1.2028E-05	415.53267871414016	95.466	1.0123	95.505	94.863	95.876	0.038864					67	44	2	0	0	0	0.39569	1	24033	24033		4.4062	0	1	219080			4457	6965	3038	3057	6032	6032					-0.035940153133424246
FPDTGSLNL	9	Unmodified	_FPDTGSLNL_					0	0	0		NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant	NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2427673339844	2	482.242732	962.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.168	1	70.168	69.668	70.668	0								0	0	0	0.065902	1	16457	16457		43.858	3.901	1				4458	5008	3039	3058	6033	6033					-0.011825117191051504
FPDTLFNGF	9	Unmodified	_FPDTLFNGF_					0	0	0		nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.25439453125	2	529.2531	1056.49165	-0.13769	-7.2871E-05	4.1881	0.0022166	4.0504	0.0021437	529.2546205310229	45.761	1.5624	45.761	44.857	46.42	0					105	54	3	0	0	0	0.26684	1	9187	9187		10.824	1.4408	1	163900			4459	5293	3040	3059	6034	6034					-0.034339213394332546
FPDTPLAL	8	Unmodified	_FPDTPLAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2393493652344	2	437.239461	872.46437	0.42918	0.00018765	-0.29458	-0.0001288	0.1346	5.8852E-05	437.239216802499	78.014	1.0966	78.014	77.555	78.651	0					85	37	3	0	0	0	0.39998	4	18866	18761;18814;18866;18923		26.341	26.341	1	287200			4460	2427	3041	3060	6035;6036;6037;6038	6037					0.02303595120179125
FPDTPLAL	8	Unmodified	_FPDTPLAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2393493652344	2	437.239461	872.46437	0.31817	0.00013912	-0.31622	-0.00013826	0.0019493	8.5229E-07	437.2392463846591	77.924	1.2743	77.959	77.489	78.763	0.034485					100	43	3	0	0	0	0.39998	5	18646	18588;18646;18689;18737;18794		26.341	11.76	1	681490			4461	2427	3041	3060	6039;6040;6041;6042;6043	6040					0.02303595120179125
FPDTPLEEW	9	Unmodified	_FPDTPLEEW_					0	0	0		ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2797241210938	2	567.261122	1132.50769	0.1055	5.9844E-05	-1.3608	-0.00077196	-1.2554	-0.00071211	567.2603546983876	72.259	0.82734	72.315	71.867	72.694	0.055931					54	28	3	0	0	0	0.20367	3	16841	16841;16902;17034		18.135	3.2967	1	159770			4462	3860	3042	3061	6044;6045;6046	6044					-0.05326259893195129
FPDWREDVL	9	Unmodified	_FPDWREDVL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7877197265625	2	588.787838	1175.56112	0.65935	0.00038822	-0.17873	-0.00010524	0.48062	0.00028298	588.7876438621252	70.49	1.1674	70.49	69.991	71.158	0					106	42	3	0	0	0	0.02143	5	16550	16505;16550;16600;16643;16691		57.249	24.463	1	759000			4463	824	3043	3062	6047;6048;6049;6050;6051	6048					-0.019634623906767956
FPDWREDVL	9	Unmodified	_FPDWREDVL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.787841796875	2	588.787838	1175.56112	0.76912	0.00045285	0.34373	0.00020238	1.1129	0.00065523	588.7877074546245	70.403	1.3652	70.464	70.046	71.412	0.060562					123	53	4	0	0	0	0.02143	6	16409	16312;16362;16409;16454;16506;16548		57.249	24.463	1	594670			4464	824	3043	3062	6052;6053;6054;6055;6056;6057	6054					-0.019634623906767956
FPDYKISFL	9	Unmodified	_FPDYKISFL_					0	0	0		ENST00000552266.1_1_12:56504682-56504898:+|nuORF	ENST00000552266.1_1_12:56504682-56504898:+|nuORF	ENST00000552266.1_1_12:56504682-56504898:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2992553710938	2	565.30005	1128.58555	0.27089	0.00015314	-2.1726	-0.0012282	-1.9017	-0.0010751	565.2986205817831	94.563	0.7926	94.601	94.25	95.042	0.038086					49	32	2	0	0	0	0.22861	1	23727	23727		15.248	2.7169	1	642030			4465	7105	3044	3063	6058	6058					0.026397977628448643
FPDYLVIQI	9	Unmodified	_FPDYLVIQI_					0	0	0		ENST00000541969.1_1_12:6969646-6972391:+|nuORF;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5	ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000541969.1_1_12:6969646-6972391:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3079833984375	2	554.307875	1106.6012	0.49676	0.00027536	-0.067412	-3.7367E-05	0.42935	0.00023799	554.3077559095292	94.67	1.168	94.67	94.271	95.439	0					155	49	4	0	0	0	0.013982	1	23954	23954		62.573	6.3957	1	2283400			4466	1718	3045	3064	6059	6059					0.0521608427989122
FPDYLVIQI	9	Unmodified	_FPDYLVIQI_					0	0	0		ENST00000541969.1_1_12:6969646-6972391:+|nuORF;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5	ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000541969.1_1_12:6969646-6972391:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.30810546875	2	554.307875	1106.6012	0.51218	0.00028391	-0.15427	-8.5515E-05	0.35791	0.00019839	554.3077487216198	94.583	1.353	94.621	94.123	95.476	0.038094					164	55	4	0	0	0	0.0045534	3	23752	23706;23752;23797		88.954	14.025	1	4885300			4467	1718	3045	3064	6060;6061;6062	6061					0.0521608427989122
FPEALIPVQL	10	Unmodified	_FPEALIPVQL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.8290405273438	2	563.828975	1125.6434	0.47577	0.00026825	-0.19701	-0.00011108	0.27877	0.00015718	563.8288671941982	91.952	0.80722	91.952	91.624	92.431	0					73	29	3	0	0	0	0.085977	2	23118	23065;23118		47.749	30.806	1	298460			4468	4583	3046	3065	6063;6064	6064					0.08560059688284127
FPEALIPVQL	10	Unmodified	_FPEALIPVQL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8291625976562	2	563.828975	1125.6434	0.39284	0.0002215	-0.038318	-2.1605E-05	0.35453	0.00019989	563.8289099277764	91.954	0.6689	91.991	91.645	92.314	0.03653					59	23	3	0	0	0	0.14584	2	22957	22909;22957		39.95	23.007	1	339470			4469	4583	3046	3065	6065;6066	6066					0.08560059688284127
FPEALRLAL	9	Unmodified	_FPEALRLAL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.724609375	2	515.30821	1028.60187	0.43112	0.00022216	-0.23335	-0.00012025	0.19777	0.00010191	515.307986180097	71.453	0.54256	71.453	71.158	71.701	0					27	18	2	0	0	0	0.14357	1	16849	16849		38.615	7.3464	1	131030			4470	4614	3047	3066	6067	6067					0.08870923719587154
FPEALRLAL	9	Unmodified	_FPEALRLAL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7244873046875	2	515.30821	1028.60187	0.41097	0.00021178	-0.057768	-2.9768E-05	0.35321	0.00018201	515.308103101652	71.356	0.55028	71.414	71.157	71.707	0.058578					29	19	2	0	0	0	0.21599	1	16679	16679		17.443	3.0373	1	118140			4471	4614	3047	3066	6068	6068					0.08870923719587154
FPEDLDEF	8	Unmodified	_FPEDLDEF_					0	0	0		tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2327880859375	2	506.218923	1010.42329	0.14026	7.1003E-05	1.1475	0.00058089	1.2878	0.0006519	506.21980367044904	58.653	0.29778	58.723	58.593	58.891	0.070477					15	9	2	0	0	0	0.53817	1	12846	12846		2.5775	0	1	40800			4472	13633	3048	3067	6069	6069					-0.08150210709959538
FPEDREVNL	9	Unmodified	_FPEDREVNL_					0	0	0		ENST00000532915.1_1_11:62538888-62545815:+|nuORF;ENST00000524976.5_1_11:62538888-62549806:+|nuORF;ENSG00000162227|ENST00000294168|TAF6L	ENST00000532915.1_1_11:62538888-62545815:+|nuORF	ENST00000532915.1_1_11:62538888-62545815:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.77734375	2	559.77747	1117.54039	0.26943	0.00015082	-0.28799	-0.00016121	-0.018564	-1.0392E-05	559.777502061129	48.97	1.0876	48.97	48.279	49.367	0					65	37	2	0	0	0	0.29334	1	10013	10013		7.609	1.4032	1	78465			4473	3815	3049	3068	6070	6070					-0.013680527703400003
FPEDREVNL	9	Unmodified	_FPEDREVNL_					0	0	0		ENST00000532915.1_1_11:62538888-62545815:+|nuORF;ENST00000524976.5_1_11:62538888-62549806:+|nuORF;ENSG00000162227|ENST00000294168|TAF6L	ENST00000532915.1_1_11:62538888-62545815:+|nuORF	ENST00000532915.1_1_11:62538888-62545815:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	559.77747	1117.54039	0.27959	0.00015651	-0.47185	-0.00026413	-0.19226	-0.00010762	559.7772255847982	48.686	0.81019	48.763	48.439	49.249	0.076607	-0.10375	-0.00011031	NaN	7.609	35	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61689			4474	3815	3049	3068							-0.013680527703400003
FPEDTMVQ	8	Unmodified	_FPEDTMVQ_					0	0	0			REV__ENSG00000164128|ENST00000296533|NPY1R	REV__ENSG00000164128|ENST00000296533|NPY1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7155456542969	2	483.715493	965.416433	0.25442	0.00012307	0.77042	0.00037267	1.0248	0.00049573	483.7154622976595	70.185	1.4672	70.185	69.319	70.786	0					121	52	3	0	0	0	0.50159	1	16507	16507		12.532	0	1	353270	+		4475	9982	3050	3069	6071	6071					-0.06765846862151648
FPEDVVRVIF	10	Unmodified	_FPEDVVRVIF_					0	0	0		ENST00000459781.5_1_6:36973566-36979631:+|nuORF;ENST00000464083.5_1_6:36973566-36981682:+|nuORF;ENSG00000146192|ENST00000274963|FGD2	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.8375244140625	2	610.837331	1219.66011	0.32172	0.00019652	-0.73483	-0.00044886	-0.41311	-0.00025234	610.8370892272854	78.995	1.072	79.025	78.505	79.577	0.030159					55	37	2	0	0	0	0.15224	2	19020	18971;19020		39.213	18.798	1	146690			4476	3280	3051	3070	6072;6073	6073					0.05906560574226205
FPEDVVRVIF	10	Unmodified	_FPEDVVRVIF_					0	0	0		ENST00000459781.5_1_6:36973566-36979631:+|nuORF;ENST00000464083.5_1_6:36973566-36981682:+|nuORF;ENSG00000146192|ENST00000274963|FGD2	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	610.837331	1219.66011	0.26445	0.00016154	-0.14992	-9.1577E-05	0.11453	6.996E-05	610.8372759702413	79.069	0.99443	79.069	78.568	79.562	0	0.02206	0.00032343	NaN	39.213	65	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144730			4477	3280	3051	3070							0.05906560574226205
FPEEAVLQQAF	11	Unmodified	_FPEEAVLQQAF_					0	0	0		ENST00000589343.1_1_19:55750771-55751051:-|nuORF;ENSG00000105063|ENST00000412770|PPP6R1	ENST00000589343.1_1_19:55750771-55751051:-|nuORF	ENST00000589343.1_1_19:55750771-55751051:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.8223266601562	2	639.821878	1277.6292	0.24733	0.00015824	0.068245	4.3664E-05	0.31557	0.00020191	640.323189204886	79.065	0.41479	79.065	78.928	79.342	0					34	13	3	0	0	0	0.098164	2	19176	19176;19229		46.022	17.528	1	281040			4478	1448	3052	3071	6074;6075	6074					0.0014936246934666997
FPEEAVLQQAF	11	Unmodified	_FPEEAVLQQAF_					0	0	0		ENST00000589343.1_1_19:55750771-55751051:-|nuORF;ENSG00000105063|ENST00000412770|PPP6R1	ENST00000589343.1_1_19:55750771-55751051:-|nuORF	ENST00000589343.1_1_19:55750771-55751051:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.8218994140625	2	639.821878	1277.6292	0.19693	0.000126	-0.063784	-4.081E-05	0.13315	8.519E-05	639.8216872627972	79.072	0.48073	79.102	78.911	79.392	0.030159					39	16	3	0	0	0	0.18269	2	19021	19021;19076		32.898	15.455	1	170660			4479	1448	3052	3071	6076;6077	6076					0.0014936246934666997
FPEELSLAF	9	Unmodified	_FPEELSLAF_					0	0	0		ENST00000494388.1_1_3:11885478-11888134:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;ENSG00000144559|ENST00000455809|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7691040039062	2	526.768583	1051.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.741	1	87.741	87.241	88.241	0								0	0	0	0.17567	1	21822	21822		21.747	3.6117	1				4480	3216	3053	3072	6078	6078					-0.0010876802518851036
FPEELSLAF	9	Unmodified	_FPEELSLAF_					0	0	0		ENST00000494388.1_1_3:11885478-11888134:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;ENSG00000144559|ENST00000455809|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7686157226562	2	526.768583	1051.52261	0.15506	8.168E-05	0.63254	0.0003332	0.78759	0.00041488	526.7688271406253	87.561	0.64728	87.591	87.258	87.906	0.030037					38	24	2	0	0	0	0.22344	1	21658	21658		15.847	5.0233	1	90731			4481	3216	3053	3072	6079	6079					-0.0010876802518851036
FPEELTQTF	9	Unmodified	_FPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.26904296875	2	556.268947	1110.52334	0.15873	8.8298E-05	0.43777	0.00024352	0.5965	0.00033181	556.2692047403721	72.239	1.329	72.239	71.755	73.084	0					144	46	4	0	0	0	0.00087611	3	17139	17139;17183;17284		125.53	76.48	1	1240000			4482	5695	3054	3073	6080;6081;6082	6080					-0.027499733761487732
FPEELTQTF	9	Unmodified	_FPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.26904296875	2	556.268947	1110.52334	0.39955	0.00022225	0.1515	8.4274E-05	0.55104	0.00030653	556.2690137709945	72.282	1.1681	72.338	71.786	72.954	0.055931					133	40	4	0	0	0	0.0010793	3	16957	16957;17000;17056		122.18	72.625	1	1303600			4483	5695	3054	3073	6083;6084;6085	6083					-0.027499733761487732
FPEERPEVL	9	Unmodified	_FPEERPEVL_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.289794921875	2	558.290214	1114.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.761	1	50.83	50.33	51.33	0.069874								0	0	0	0.27152	1	10410	10410		4.897	0	1				4484	3906	3055	3074	6086	6086					0.01317421752082737
FPEESSALIEF	11	Unmodified	_FPEESSALIEF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8046264648438	2	634.805894	1267.59723	0.42582	0.00027031	-0.35149	-0.00022313	0.074329	4.7185E-05	634.8056063870379	82.399	1.059	82.399	81.931	82.99	0					64	37	2	0	0	0	0.32422	1	20234	20234		15.248	3.0078	1	127300			4485	4532	3056	3075	6087	6087					-0.02586050004470053
FPEEVIATIF	10	Unmodified	_FPEEVIATIF_					0	0	0		nc|ENSG00000186480|O15503-2|INSIG1;ENSG00000186480|ENST00000340368|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.3106079101562	2	583.310615	1164.60668	0.52352	0.00030537	-0.41466	-0.00024187	0.10886	6.3497E-05	583.3101593272565	94.758	1.3643	94.758	94.126	95.491	0					182	58	4	0	0	0	0.063851	5	23850	23798;23803;23850;23980;24023		53.833	25.346	1	873480			4486	5080	3057	3076	6088;6089;6090;6091;6092	6090					0.030957630717011853
FPEEVIATIF	10	Unmodified	_FPEEVIATIF_					0	0	0		nc|ENSG00000186480|O15503-2|INSIG1;ENSG00000186480|ENST00000340368|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3111572265625	2	583.310615	1164.60668	0.57017	0.00033259	-0.48996	-0.0002858	0.080212	4.6789E-05	583.3100867661766	94.608	1.3044	94.646	94.144	95.449	0.038094					173	53	4	0	0	0	0.085977	5	23671	23620;23671;23753;23826;23874		47.749	26.002	1	842860			4487	5080	3057	3076	6093;6094;6095;6096;6097	6094					0.030957630717011853
FPEGALIRL	9	Unmodified	_FPEGALIRL_					0	0	0		ENST00000522126.5_1_5:141021104-141024617:-|nuORF;nc|ENSG00000197948|Q86WN1-2|FCHSD1;ENSG00000197948|ENST00000435817|FCHSD1	ENST00000522126.5_1_5:141021104-141024617:-|nuORF	ENST00000522126.5_1_5:141021104-141024617:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.3006286621094	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.879	1	66.879	66.379	67.379	0								0	0	0	0.19984	1	15459	15459		18.146	0	1				4488	5331	3058	3077	6098	6098					0.07950637202554844
FPEGALIRL	9	Unmodified	_FPEGALIRL_					0	0	0		ENST00000522126.5_1_5:141021104-141024617:-|nuORF;nc|ENSG00000197948|Q86WN1-2|FCHSD1;ENSG00000197948|ENST00000435817|FCHSD1	ENST00000522126.5_1_5:141021104-141024617:-|nuORF	ENST00000522126.5_1_5:141021104-141024617:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.30010986328125	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.667	1	66.732	66.232	67.232	0.065071								0	0	0	0.23593	1	15246	15246		12.241	0	1				4489	5331	3058	3077	6099	6099					0.07950637202554844
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7689208984375	2	574.768583	1147.52261	0.51086	0.00029363	0.0062756	3.607E-06	0.51714	0.00029723	574.7686042365247	93.422	2.7229	93.422	92.682	95.405	0					350	117	5	0	0	0	0.0020132	7	23575	23395;23437;23486;23530;23575;23621;23665		115.69	91.018	1	6501500			4490	4354	3059	3078	6100;6101;6102;6103;6104;6105;6106	6104					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7686767578125	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.948	1	93.948	93.448	94.448	0								0	0	0	0.0035948	1	23705	23705		78.149	42.022	1				4491	4354	3059	3078	6107	6107					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7686767578125	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.095	1	94.095	93.595	94.595	0								0	0	0	0.010199	1	23749	23749		68.081	38.999	1				4492	4354	3059	3078	6108	6108					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7687377929688	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.23	1	94.23	93.73	94.73	0								0	0	0	0.027871	1	23790	23790		58.679	35.943	1				4493	4354	3059	3078	6109	6109					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7684936523438	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.39	1	94.39	93.89	94.89	0								0	0	0	0.058966	1	23839	23839		46.021	23.285	1				4494	4354	3059	3078	6110	6110					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7684936523438	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.564	1	94.564	94.064	95.064	0								0	0	0	0.084773	1	23892	23892		37.974	15.238	1				4495	4354	3059	3078	6111	6111					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7684326171875	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.715	1	94.715	94.215	95.215	0								0	0	0	0.116	1	23938	23938		30.637	7.4881	1				4496	4354	3059	3078	6112	6112					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7687377929688	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.878	1	94.878	94.378	95.378	0								0	0	0	0.19239	1	23987	23987		19.257	10.512	1				4497	4354	3059	3078	6113	6113					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7682495117188	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.054	1	95.054	94.554	95.554	0								0	0	0	0.116	1	24041	24041		30.637	13.524	1				4498	4354	3059	3078	6114	6114					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7687377929688	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.191	1	95.191	94.691	95.691	0								0	0	0	0.15116	1	24083	24083		25.399	12.357	1				4499	4354	3059	3078	6115	6115					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7689208984375	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.413	1	95.413	94.913	95.913	0								0	0	0	0.15116	1	24151	24151		25.399	12.357	1				4500	4354	3059	3078	6116	6116					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7972412109375	2	574.768583	1147.52261	0.30329	0.00017432	0.36955	0.00021241	0.67284	0.00038673	574.769158675746	96.172	0.28788	96.172	95.948	96.235	0					20	14	2	0	0	0	0.25281	1	24368	24368		6.7232	2.7788	1	71052			4501	4354	3059	3078	6117	6117					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7689819335938	2	574.768583	1147.52261	0.44532	0.00025595	0.026859	1.5438E-05	0.47218	0.00027139	574.7686100409238	93.546	2.7258	93.583	92.722	95.448	0.037369					413	117	5	0	0	0	0.0012363	17	23390	23223;23265;23307;23351;23390;23436;23485;23528;23567;23609;23652;23692;23736;23783;23837;23891;23949		120.45	88.333	1	6402700			4502	4354	3059	3078	6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133;6134	6122					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7974853515625	2	574.768583	1147.52261	0.29354	0.00016872	-0.22145	-0.00012729	0.072084	4.1432E-05	574.7688118665623	95.817	0.64025	95.856	95.634	96.274	0.038864					40	30	2	0	0	0	0.2418	1	24243	24243		13.906	9.15	1	85907			4503	4354	3059	3078	6135	6135					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	574.768583	1147.52261	0.21934	0.00012607	-5.373	-0.0030882	-5.1536	-0.0029621	575.265476796439	95.562	0.084068	95.562	95.491	95.575	0	-0.14701	-0.0057753	NaN	13.906	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268810			4504	4354	3059	3078							-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000072163|ENST00000355119|LIMS2;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.768583	1147.52261	0.39494	0.000227	0.52787	0.0003034	0.9228	0.0005304	574.7696046688658	96.452	0.12833	96.492	96.398	96.527	0.039772	0.1601	0.00011071	NaN	3.5965	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46781			4505	4354	3059	3078							-0.045247680252032296
FPEGLITGSLP	11	Unmodified	_FPEGLITGSLP_					0	0	0		ENSG00000106477|ENST00000223208|CEP41;ENST00000603513.1_1_7:130039868-130040375:-|nuORF	ENSG00000106477|ENST00000223208|CEP41	ENSG00000106477|ENST00000223208|CEP41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.297607421875	2	565.808239	1129.60193	0.5765	0.00032619	0.066645	3.7709E-05	0.64314	0.00036389	565.8082156704318	82.171	0.96142	82.171	81.69	82.651	0					71	33	3	0	0	0	0.31637	1	20091	20091		16.149	2.2431	1	125640			4506	1524	3060	3079	6136	6136					0.042308789289336346
FPEGNPAKI	9	Unmodified	_FPEGNPAKI_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.76092529296875	2	486.761092	971.507631	-0.55665	-0.00027096	0.15111	7.3554E-05	-0.40554	-0.0001974	486.76119742243895	42.741	1.0727	42.741	42.106	43.179	0					71	36	2	0	0	0	0.17382	1	8122	8122		21.59	17.261	1	75664			4507	2405	3061	3080	6137	6137					0.02073784897470432
FPEGNPAKI	9	Unmodified	_FPEGNPAKI_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7605285644531	2	486.761092	971.507631	-0.3937	-0.00019164	0.28349	0.00013799	-0.11022	-5.365E-05	486.7612660103274	42.472	1.1739	42.562	42.094	43.268	0.089764					72	44	2	0	0	0	0.1646	1	7932	7932		22.658	15.369	1	65091			4508	2405	3061	3080	6138	6138					0.02073784897470432
FPEHIFPAL	9	Unmodified	_FPEHIFPAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7875366210938	2	535.78711	1069.55967	0.18809	0.00010078	0.72447	0.00038816	0.91256	0.00048894	535.7875941607456	71.912	2.6378	71.912	71.415	74.053	0					309	93	6	0	0	0	0.00052627	13	16928	16928;16968;17012;17064;17108;17155;17197;17240;17292;17356;17406;17450;17533		131.3	82.952	1	27116000			4509	2888	3062	3081	6139;6140;6141;6142;6143;6144;6145;6146;6147;6148;6149;6150;6151	6139					0.027669483112276794
FPEHIFPAL	9	Unmodified	_FPEHIFPAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.253662109375	2	535.78711	1069.55967	0.40031	0.00021448	0.15552	8.3325E-05	0.55582	0.0002978	535.7872972893972	76.717	0.69878	76.717	76.445	77.144	0					37	24	2	0	0	0	0.2446	1	18529	18529		11.64	4.9171	1	72678			4510	2888	3062	3081	6152	6152					0.027669483112276794
FPEHIFPAL	9	Unmodified	_FPEHIFPAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7874755859375	2	535.78711	1069.55967	0.42381	0.00022707	0.57496	0.00030806	0.99877	0.00053513	535.7874878978654	71.776	3.0331	71.832	71.343	74.376	0.055931					330	110	6	0	0	0	1.3047E-05	9	16749	16749;16800;16844;16886;16930;16981;17023;17102;17205		146.01	88.536	1	30310000			4511	2888	3062	3081	6153;6154;6155;6156;6157;6158;6159;6160;6161	6153					0.027669483112276794
FPEIFYTFL	9	Unmodified	_FPEIFYTFL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8027954101562	2	588.802426	1175.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.59	1	105.62	105.12	106.12	0.029739								0	0	0	0.28631	1	27022	27022		1.8442	0	1				4512	5224	3063	3082	6162	6162					0.009526819055963642
FPEILCIHL	9	Unmodified	_FPEILCIHL_					0	0	0		ENST00000461986.5_1_1:78183501-78187881:-|nuORF;nc|ENSG00000077254|Q8TEY7-3|USP33;FUBP1-USP33|5|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|2|fusion	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.796142578125	2	542.79662	1083.57869	0.64362	0.00034936	-0.58895	-0.00031968	0.054675	2.9677E-05	542.7960814635118	83.854	0.47278	83.854	83.658	84.131	0					21	15	2	0	0	0	0.017037	2	20627	20616;20627		60.39	31.903	1	140510			4513	857	3064	3083	6163;6164	6164					0.040241616106186484
FPEILCIHL	9	Unmodified	_FPEILCIHL_					0	0	0		ENST00000461986.5_1_1:78183501-78187881:-|nuORF;nc|ENSG00000077254|Q8TEY7-3|USP33;FUBP1-USP33|5|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|2|fusion	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	ENST00000461986.5_1_1:78183501-78187881:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.8080444335938	2	542.79662	1083.57869	0.37182	0.00020182	-0.37464	-0.00020335	-0.0028124	-1.5266E-06	542.7962797385014	83.891	0.55095	83.913	83.641	84.192	0.021751					32	19	3	0	0	0	0.0046476	2	20448	20448;20499		85.357	34.502	1	128480			4514	857	3064	3083	6165;6166	6165					0.040241616106186484
FPEIQGFLQL	10	Unmodified	_FPEIQGFLQL_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.324462890625	2	596.324057	1190.63356	0.24204	0.00014433	0.37278	0.0002223	0.61482	0.00036663	596.3242371239508	96.152	0.87302	96.152	95.872	96.745	0					115	43	4	0	0	0	0.037458	5	24405	24320;24360;24405;24460;24517		61.09	33.955	1	847540			4515	3077	3065	3084	6167;6168;6169;6170;6171	6169					0.04586871682909077
FPEIQGFLQL	10	Unmodified	_FPEIQGFLQL_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.3246459960938	2	596.324057	1190.63356	0.1691	0.00010084	0.44382	0.00026466	0.61293	0.0003655	596.324305570605	96.164	0.86866	96.204	95.876	96.745	0.039772					87	46	3	0	0	0	0.037458	5	24265	24143;24186;24224;24265;24326		61.09	38.354	1	807930			4516	3077	3065	3084	6172;6173;6174;6175;6176	6175					0.04586871682909077
FPEIVAPLL	9	Unmodified	_FPEIVAPLL_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7997131347656	2	499.799686	997.584819	0.60911	0.00030443	-0.18995	-9.4936E-05	0.41916	0.0002095	499.79950110965535	93.196	0.55656	93.196	92.928	93.485	0					52	21	3	0	0	0	0.1182	1	23488	23488		28.487	6.7402	1	352040			4517	1685	3066	3085	6177	6177					0.08593003113799114
FPEIVAPLL	9	Unmodified	_FPEIVAPLL_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	499.799686	997.584819	0.54585	0.00027282	-0.006467	-3.2322E-06	0.53939	0.00026959	499.79957787547477	93.125	0.58498	93.162	92.949	93.534	0.037369	-0.016759	0.00010309	NaN	28.487	70	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296620			4518	1685	3066	3085							0.08593003113799114
FPELDSPQL	9	Unmodified	_FPELDSPQL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2635498046875	2	523.263665	1044.51278	-0.019109	-9.9988E-06	0.40106	0.00020986	0.38195	0.00019986	523.2636919471261	72.647	0.8871	72.647	72.228	73.115	0					64	30	3	0	0	0	0.017478	2	17200	17200;17306		60.074	15.667	1	239660			4519	1322	3067	3086	6178;6179	6178					-0.0076995603058094275
FPELDSPQL	9	Unmodified	_FPELDSPQL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2637939453125	2	523.263665	1044.51278	0.054869	2.8711E-05	0.11891	6.222E-05	0.17378	9.0931E-05	523.2637383337911	72.511	0.88763	72.567	72.239	73.126	0.055931					51	30	2	0	0	0	0.0569	3	17044	16996;17044;17090		41.84	11.203	1	285810			4520	1322	3067	3086	6180;6181;6182	6181					-0.0076995603058094275
FPELLPLSEL	10	Unmodified	_FPELLPLSEL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3265991210938	2	579.326265	1156.63798	0.60851	0.00035252	-0.033171	-1.9217E-05	0.57534	0.00033331	579.3261284799893	98.764	0.55003	98.764	98.471	99.021	0					72	33	3	0	0	0	0.095946	3	25158	25119;25158;25198		45.7	3.7441	1	986730			4521	486	3068	3087	6183;6184;6185	6184					0.06592336105813956
FPELLPLSEL	10	Unmodified	_FPELLPLSEL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3265991210938	2	579.326265	1156.63798	0.66212	0.00038358	-0.21961	-0.00012722	0.44251	0.00025636	579.3260563566163	98.659	0.62979	98.701	98.482	99.112	0.041931					64	38	2	0	0	0	0.063851	4	24978	24940;24978;25018;25060		53.833	31.097	1	1470500			4522	486	3068	3087	6186;6187;6188;6189	6187					0.06592336105813956
FPELVLPVVL	10	Unmodified	_FPELVLPVVL_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3499145507812	2	563.349543	1124.68453	0.00015844	8.9259E-08	0.29062	0.00016372	0.29077	0.00016381	563.3496883768905	106.29	0.52069	106.29	106.05	106.57	0					87	48	3	0	0	0	0.33099	2	27356	27356;27396		19.257	12.534	1	190900			4523	5183	3069	3088	6190;6191	6190					0.12717820727743856
FPELVLPVVL	10	Unmodified	_FPELVLPVVL_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3499755859375	2	563.349543	1124.68453	0.33396	0.00018814	0.15287	8.6122E-05	0.48684	0.00027426	563.3495230877026	106.16	0.52274	106.19	106.03	106.56	0.029739					88	58	2	0	0	0	0.33099	2	27186	27153;27186		19.257	12.534	1	159340			4524	5183	3069	3088	6192;6193	6193					0.12717820727743856
FPELYPFLL	9	Unmodified	_FPELYPFLL_					0	0	0		ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA	ENSG00000115970|ENST00000405975|THADA	ENSG00000115970|ENST00000405975|THADA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.813232421875	2	569.812793	1137.61103	-0.043738	-2.4923E-05	0.43358	0.00024706	0.38984	0.00022214	569.8131240359783	106.32	1.4084	106.32	105.89	107.29	0					426	134	5	0	0	0	0.021119	3	27411	27411;27445;27482		57.471	42.095	1	6063200			4525	1932	3070	3089	6194;6195;6196	6194					0.04773272285274288
FPELYPFLL	9	Unmodified	_FPELYPFLL_					0	0	0		ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA	ENSG00000115970|ENST00000405975|THADA	ENSG00000115970|ENST00000405975|THADA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8131103515625	2	569.812793	1137.61103	0.26635	0.00015177	0.13994	7.9741E-05	0.40629	0.00023151	569.8128938180002	106.27	1.0421	106.3	105.86	106.9	0.029739					424	113	5	0	0	0	0.004541	3	27185	27185;27221;27254		89.427	59.849	1	5817800			4526	1932	3070	3089	6197;6198;6199	6197					0.04773272285274288
FPENFHQNL	9	Unmodified	_FPENFHQNL_					0	0	0		ENST00000526789.1_1_11:36300025-36310962:-|nuORF;ENST00000528608.5_1_11:36298627-36310962:-|nuORF;nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	ENST00000526789.1_1_11:36300025-36310962:-|nuORF	ENST00000526789.1_1_11:36300025-36310962:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.272705078125	2	573.272355	1144.53016	0.16701	9.5742E-05	-0.10825	-6.2059E-05	0.058756	3.3683E-05	573.2723391441793	48.962	1.4234	48.962	48.453	49.876	0					126	49	5	0	0	0	0.029291	3	9974	9924;9974;10025		51.63	28.481	1	237180			4527	1666	3071	3090	6200;6201;6202	6201					-0.03632615704896125
FPENFHQNL	9	Unmodified	_FPENFHQNL_					0	0	0		ENST00000526789.1_1_11:36300025-36310962:-|nuORF;ENST00000528608.5_1_11:36298627-36310962:-|nuORF;nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	ENST00000526789.1_1_11:36300025-36310962:-|nuORF	ENST00000526789.1_1_11:36300025-36310962:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2720947265625	2	573.272355	1144.53016	0.10758	6.1675E-05	0.18119	0.00010387	0.28877	0.00016555	573.2723265744731	48.947	1.2521	49.024	48.468	49.721	0.076603					90	43	3	0	0	0	0.03472	1	9781	9781		47.749	23.075	1	175650			4528	1666	3071	3090	6203	6203					-0.03632615704896125
FPENYVPTVF	10	Unmodified	_FPENYVPTVF_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8013916015625	2	606.800414	1211.58628	0.94476	0.00057328	0.38835	0.00023565	1.3331	0.00080893	606.8006275355549	81.948	1.9965	81.948	81.145	83.141	0					127	69	3	0	0	0	0.33926	3	20053	19996;20053;20101		18.373	0.60036	1	279320			4529	1931	3072	3091	6204;6205;6206	6205					-0.011054075881247627
FPENYVPTVF	10	Unmodified	_FPENYVPTVF_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8007202148438	2	606.800414	1211.58628	0.76751	0.00046572	0.62213	0.00037751	1.3896	0.00084323	606.800870317511	81.938	1.9973	81.96	80.88	82.878	0.021866					141	71	3	0	0	0	0.28859	3	19979	19885;19933;19979		23.79	8.9515	1	289030			4530	1931	3072	3091	6207;6208;6209	6209					-0.011054075881247627
FPEPEHSSF	9	Unmodified	_FPEPEHSSF_					0	0	0		nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.300537109375	2	538.737814	1075.46108	0.015573	8.3897E-06	-0.36724	-0.00019785	-0.35167	-0.00018946	538.7378799535713	45.995	0.76631	45.995	45.617	46.384	0					67	26	3	0	0	0	0.010722	1	9106	9106		78.149	49.663	1	195670			4531	3834	3073	3092	6210	6210					-0.0736369972448756
FPEPEHSSF	9	Unmodified	_FPEPEHSSF_					0	0	0		nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.30029296875	2	538.737814	1075.46108	0.24371	0.0001313	-0.37638	-0.00020277	-0.13268	-7.1477E-05	538.7377734399939	45.853	0.72392	45.939	45.67	46.393	0.085617					68	27	3	0	0	0	0.0071888	1	8941	8941		85.272	61.251	1	150580			4532	3834	3073	3092	6211	6211					-0.0736369972448756
FPEPLIIPVL	10	Unmodified	_FPEPLIIPVL_					0	0	0		ENST00000553853.1_1_14:35297835-35331506:-|nuORF;BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	ENST00000553853.1_1_14:35297835-35331506:-|nuORF	ENST00000553853.1_1_14:35297835-35331506:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.3499145507812	2	569.349543	1136.68453	0.35465	0.00020192	0.17315	9.8581E-05	0.5278	0.0003005	569.3495522710562	103.46	0.85155	103.5	102.98	103.83	0.03791					266	85	4	0	0	0	0.17902	1	26451	26451		36.127	14.38	1	2020100			4533	84	3074	3093	6212	6212					0.12165820727750543
FPEQIAEKL	9	Unmodified	_FPEQIAEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7955932617188	2	537.795132	1073.57571	0.65971	0.00035479	-0.42399	-0.00022802	0.23572	0.00012677	537.7947159474228	54.278	1.6708	54.278	53.544	55.215	0					149	66	4	0	0	0	0.0027287	5	11682	11568;11608;11627;11682;11731		111.31	44.852	1	991370			4534	1950	3075	3094	6213;6214;6215;6216;6217	6216					0.04186609757448423
FPEQIAEKL	9	Unmodified	_FPEQIAEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7952880859375	2	537.795132	1073.57571	0.75409	0.00040554	-0.44192	-0.00023766	0.31217	0.00016788	537.7946258061608	54.358	1.4105	54.423	53.597	55.007	0.065128					137	63	4	0	0	0	0.0044683	3	11552	11467;11513;11552		92.201	42.647	1	794430			4535	1950	3075	3094	6218;6219;6220	6220					0.04186609757448423
FPERKEREM	9	Unmodified	_FPERKEREM_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.87274169921875	3	407.873007	1220.59719	-0.077879	-3.1765E-05	-0.32269	-0.00013162	-0.40057	-0.00016338	407.8728544506524	21.612	1.4551	21.612	21.199	22.654	0					222	133	2	0	0	0	0.3352	2	1874	1874;1910		2.086	2.086	1	41140			4536	1132	3076	3095	6221;6222	6221					-0.004283284854636804
FPERKEREM	9	Unmodified	_FPERKEREM_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.2070617675781	3	407.873007	1220.59719	-0.12304	-5.0183E-05	-0.19087	-7.7851E-05	-0.31391	-0.00012803	407.87286046788256	21.282	1.5496	21.381	20.965	22.515	0.099634					225	157	2	0	0	0	0.31926	3	1731	1696;1731;1770		4.1895	1.1172	1	64634			4537	1132	3076	3095	6223;6224;6225	6224					-0.004283284854636804
FPESAGAF	8	Unmodified	_FPESAGAF_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	413.19354248046875	2	413.192511	824.370469	0.57795	0.0002388	1.0585	0.00043735	1.6364	0.00067615	413.1932734548064	78.807	5.4809	78.807	78.205	83.686	0					390	190	5	0	0	0	0.53817	2	19073	19073;19210		2.5775	2.5775	1	5117500	+		4538	9827	3077	3096	6226;6227	6226					-0.04874123982085621
FPESSAIEAL	10	Unmodified	_FPESSAIEAL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2689819335938	2	532.268947	1062.52334	0.54991	0.0002927	0.11875	6.3205E-05	0.66866	0.00035591	532.2688937691465	69.46	1.1794	69.46	68.888	70.067	0					98	41	3	0	0	0	0.095946	3	16237	16186;16237;16329		45.7	14.431	1	377210			4539	3715	3078	3097	6228;6229;6230	6229					-0.005419733761300449
FPESSAIEAL	10	Unmodified	_FPESSAIEAL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2689208984375	2	532.268947	1062.52334	0.39558	0.00021056	0.099307	5.2858E-05	0.49489	0.00026341	532.268925937415	69.354	1.1845	69.416	68.945	70.13	0.062126					93	45	3	0	0	0	0.25276	2	16038	16038;16140		27.629	7.2143	1	421170			4540	3715	3078	3097	6231;6232	6231					-0.005419733761300449
FPETLPESSLF	11	Unmodified	_FPETLPESSLF_					0	0	0		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8169555664062	2	633.816261	1265.61797	0.53458	0.00033882	-0.38846	-0.00024621	0.14612	9.2615E-05	633.8161310153424	84.075	0.49718	84.075	83.717	84.215	0					38	16	3	0	0	0	0.22821	2	20738	20687;20738		26.268	15.444	1	171100			4541	5198	3079	3098	6233;6234	6234					-0.0042145962481754395
FPETLPESSLF	11	Unmodified	_FPETLPESSLF_					0	0	0		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8167114257812	2	633.816261	1265.61797	0.3324	0.00021068	-0.24992	-0.0001584	0.082478	5.2276E-05	634.3176166996429	84.172	0.57027	84.194	83.696	84.266	0.021744					45	20	3	0	0	0	0.31637	2	20538	20538;20588		16.149	7.4037	1	146560			4542	5198	3079	3098	6235;6236	6235					-0.0042145962481754395
FPETTEEEL	9	Unmodified	_FPETTEEEL_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.76318359375	2	547.748044	1093.48154	0.2679	0.00014674	0.34885	0.00019108	0.61675	0.00033783	547.748180256102	56.628	1.1341	56.628	56.355	57.489	0					68	41	2	0	0	0	0.091044	1	12349	12349		34.402	15.145	1	146350			4543	485	3080	3099	6237	6237					-0.06146573855335191
FPETTEEEL	9	Unmodified	_FPETTEEEL_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7630615234375	2	547.748044	1093.48154	0.3326	0.00018218	0.27735	0.00015192	0.60995	0.0003341	547.7480078104676	56.537	1.0579	56.603	56.234	57.292	0.066448					54	38	2	0	0	0	0.10833	1	12230	12230		30.637	3.7529	1	103830			4544	485	3080	3099	6238	6238					-0.06146573855335191
FPETWIWH	8	Unmodified	_FPETWIWH_					0	0	0		CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2986450195312	2	558.269084	1114.52362	0.56373	0.00031471	2.1225	0.0011849	2.6862	0.0014996	558.2707409291133	71.019	0.27183	71.019	70.937	71.208	0					9	8	2	0	0	0	0.35759	1	16767	16767		9.3474	0	1	92068			4545	241	3081	3100	6239	6239					-0.029065088656125226
FPEVDVFVL	9	Unmodified	_FPEVDVFVL_					0	0	0		nc|ENSG00000132768|Q9BQC3-3|DPH2;ENSG00000132768|ENST00000255108|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7860107421875	2	532.786776	1063.559	0.52089	0.00027752	-0.32191	-0.00017151	0.19898	0.00010601	532.7865519728715	97.024	0.67071	97.024	96.768	97.438	0					55	32	2	0	0	0	0.21398	3	24654	24610;24654;24701		16.942	1.0951	1	218650			4546	2594	3082	3101	6240;6241;6242	6241					0.02976108871530414
FPEVDVFVL	9	Unmodified	_FPEVDVFVL_					0	0	0		nc|ENSG00000132768|Q9BQC3-3|DPH2;ENSG00000132768|ENST00000255108|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.787353515625	2	532.786776	1063.559	0.65878	0.00035099	-0.39385	-0.00020984	0.26493	0.00014115	532.7865914661654	96.926	0.97363	96.966	96.657	97.631	0.039772					87	47	3	0	0	0	0.25979	3	24440	24440;24483;24530		11.64	0.81637	1	209470			4547	2594	3082	3101	6243;6244;6245	6243					0.02976108871530414
FPEVYVPTVF	10	Unmodified	_FPEVYVPTVF_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;RHOA|p.E40Q|3|0.18|ENSG00000067560|chr3:49375472-49375472|C/G|missense_variant;ENST00000478447.1_1_1:113246211-113247744:-|nuORF	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.31298828125	2	599.313158	1196.61176	0.57137	0.00034243	0.12584	7.5418E-05	0.69721	0.00041785	599.3131903311886	92.383	0.81419	92.383	92.037	92.851	0					78	30	4	0	0	0	0.2803	1	23218	23218		29.082	18.258	1	323140			4548	716	3083	3102	6246	6246					0.021320669343140253
FPEVYVPTVF	10	Unmodified	_FPEVYVPTVF_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;RHOA|p.E40Q|3|0.18|ENSG00000067560|chr3:49375472-49375472|C/G|missense_variant;ENST00000478447.1_1_1:113246211-113247744:-|nuORF	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3134765625	2	599.313158	1196.61176	0.49086	0.00029418	0.071104	4.2614E-05	0.56196	0.00033679	599.3130734677551	92.359	0.70837	92.396	92.128	92.836	0.03653					65	24	3	0	0	0	0.24016	1	23047	23047		29.082	7.3349	1	331230			4549	716	3083	3102	6247	6247					0.021320669343140253
FPEYLVVQI	9	Unmodified	_FPEYLVVQI_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3079833984375	2	554.307875	1106.6012	0.65505	0.0003631	-0.36787	-0.00020391	0.28718	0.00015919	554.3075325419834	87.953	0.65826	87.953	87.687	88.345	0					40	23	3	0	0	0	0.16392	1	21918	21918		22.736	10.205	1	227620			4550	624	3084	3103	6248	6248					0.05216084279913957
FPEYTHQLF	9	Unmodified	_FPEYTHQLF_					0	0	0		ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.285400390625	2	591.284931	1180.55531	0.38145	0.00022555	-0.13536	-8.0035E-05	0.2461	0.00014551	591.7863757934548	61.802	0.87563	61.802	61.672	62.547	0					57	35	2	0	0	0	0.048027	2	13976	13976;14068		43.772	23.319	1	276910			4551	2408	3085	3104	6249;6250	6249					-0.02774560902344092
FPEYTHQLF	9	Unmodified	_FPEYTHQLF_					0	0	0		ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.284912109375	2	591.284931	1180.55531	0.40739	0.00024089	-0.2453	-0.00014504	0.1621	9.5846E-05	591.2847049300582	61.832	0.66665	61.905	61.73	62.396	0.073421					51	29	2	0	0	0	0.29718	1	13848	13848		7.1017	0.37856	1	248170			4552	2408	3085	3104	6251	6251					-0.02774560902344092
FPFAFPQIL	9	Unmodified	_FPFAFPQIL_					0	0	0		ENST00000548458.6_1_12:105761268-105764632:+|nuORF	ENST00000548458.6_1_12:105761268-105764632:+|nuORF	ENST00000548458.6_1_12:105761268-105764632:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.30078125	2	540.299853	1078.58515	0.55045	0.00029741	-0.2208	-0.0001193	0.32965	0.00017811	540.2998869045966	102.48	0.45293	102.52	102.32	102.77	0.040916					63	32	3	0	0	0	0.29576	1	26114	26114		7.2892	1.5574	1	125800			4553	7087	3086	3105	6252	6252					0.04900422833657103
FPFAVANQL	9	Unmodified	_FPFAVANQL_					0	0	0		ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF	ENSG00000086232|ENST00000199389|EIF2AK1	ENSG00000086232|ENST00000199389|EIF2AK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7716979980469	2	503.77146	1005.52837	0.21622	0.00010892	0.58995	0.0002972	0.80617	0.00040612	503.77170536195376	77.886	0.66602	77.886	77.606	78.272	0					61	22	4	0	0	0	0.0010237	2	18794	18794;18840		123.1	82.648	1	600050			4554	976	3087	3106	6253;6254	6253					0.025823752771316322
FPFAVANQL	9	Unmodified	_FPFAVANQL_					0	0	0		ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF	ENSG00000086232|ENST00000199389|EIF2AK1	ENSG00000086232|ENST00000199389|EIF2AK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.771728515625	2	503.77146	1005.52837	0.40588	0.00020447	0.32793	0.0001652	0.73381	0.00036967	503.7715220892757	77.83	0.67245	77.864	77.649	78.321	0.034485					64	22	4	0	0	0	0.0046476	2	18624	18624;18677		85.357	85.357	1	693580			4555	976	3087	3106	6255;6256	6255					0.025823752771316322
FPFCPLLLT	9	Unmodified	_FPFCPLLLT_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.779296875	2	525.788264	1049.56198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.965	1	84.965	84.465	85.465	0								0	0	0	0.19992	1	20974	20974		18.135	3.2967	1				4556	4074	3088	3107	6257	6257					0.03917660724687266
FPFDVAVKF	9	Unmodified	_FPFDVAVKF_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.2891845703125	2	535.289485	1068.56442	0.36684	0.00019636	-0.032312	-1.7296E-05	0.33453	0.00017907	535.2895296608498	77.483	1.5013	77.483	77.204	78.705	0					131	58	3	0	0	0	1.7199E-05	3	18637	18637;18683;18732		142.08	105.95	1	1659800			4557	4298	3089	3108	6258;6259;6260	6258					0.032878324539979076
FPFDVAVKF	9	Unmodified	_FPFDVAVKF_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.2897338867188	2	535.289485	1068.56442	0.67147	0.00035943	-0.24236	-0.00012973	0.42911	0.0002297	535.289350074489	77.356	1.3374	77.391	77.118	78.456	0.034485					103	51	3	0	0	0	1.7199E-05	3	18525	18484;18525;18576		142.08	105.95	1	1960600			4558	4298	3089	3108	6261;6262;6263	6262					0.032878324539979076
FPFERLYDL	9	Unmodified	_FPFERLYDL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.30908203125	2	600.308406	1198.60226	0.43339	0.00026017	-0.071397	-4.286E-05	0.36199	0.00021731	600.308318570157	75.801	0.54394	75.801	75.404	75.948	0					63	29	3	0	0	0	0.0072857	2	18198	18152;18198		75.571	33.731	1	1852800			4559	3192	3090	3109	6264;6265	6265					0.010902986488190436
FPFERLYDL	9	Unmodified	_FPFERLYDL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.308837890625	2	600.308406	1198.60226	0.40808	0.00024497	-0.06724	-4.0365E-05	0.34084	0.00020461	600.3083685640605	75.767	0.38679	75.811	75.619	76.006	0.044037					55	25	3	0	0	0	0.016057	1	18001	18001		61.09	33.461	1	1940300			4560	3192	3090	3109	6266	6266					0.010902986488190436
FPFFADSSL	9	Unmodified	_FPFFADSSL_					0	0	0			REV__tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	REV__tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.74658203125	2	515.74765	1029.48075	0.19723	0.00010172	-1.7601	-0.00090776	-1.5629	-0.00080604	515.7470887505156	86.981	0.54993	87.009	86.706	87.256	0.027573					44	24	2	0	0	0	0.17247	1	21401	21401		21.747	0	1	434180	+		4561	13183	3091	3110	6267	6267					-0.03281323713713391
FPFFADSSL	9	Unmodified	_FPFFADSSL_					0	0	0			REV__tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	REV__tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	515.74765	1029.48075	0.20257	0.00010447	-1.9113	-0.00098576	-1.7087	-0.00088128	515.7469126957916	86.98	0.66549	86.98	86.683	87.348	0	-0.014357	-5.0664E-05	NaN	21.747	55	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445920	+		4562	13183	3091	3110							-0.03281323713713391
FPFFADSSL	9	Unmodified	_FPFFADSSL_					0	0	0			REV__tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	REV__tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	515.74765	1029.48075	0.19723	0.00010172	-1.7601	-0.00090776	-1.5629	-0.00080604	515.7470887505156	86.981	0.54993	87.009	86.706	87.256	0.027573	0.014357	0.00010532	NaN	21.747	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434180	+		4563	13183	3091	3110							-0.03281323713713391
FPFGCLLR	8	Unmodified	_FPFGCLLR_					0	0	0		ENST00000498190.1_1_7:95216954-95218999:-|nuORF	ENST00000498190.1_1_7:95216954-95218999:-|nuORF	ENST00000498190.1_1_7:95216954-95218999:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7579650878906	2	476.757298	951.500044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.84	1	100.88	100.38	101.38	0.042839								0	0	0	0.38822	1	25647	25647		0.79363	0	1				4564	6852	3092	3111	6268	6268					0.022353540962058105
FPFGFFTTV	9	Unmodified	_FPFGFFTTV_					0	0	0		ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7684936523438	2	531.768386	1061.52222	0.58069	0.00030879	-0.067534	-3.5913E-05	0.51316	0.00027288	531.7682632064846	98.418	0.60323	98.418	98.219	98.822	0					61	32	3	0	0	0	0.12809	2	25092	25048;25092		26.884	11.036	1	238320			4565	5464	3093	3112	6269;6270	6270					-0.006081429543883132
FPFGFFTTV	9	Unmodified	_FPFGFFTTV_					0	0	0		ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.768310546875	2	531.768386	1061.52222	0.65624	0.00034897	-0.39748	-0.00021137	0.25875	0.0001376	531.7682161046971	98.414	0.54034	98.456	98.218	98.758	0.041939					43	29	2	0	0	0	0.12809	2	24924	24879;24924		26.884	9.7708	1	143390			4566	5464	3093	3112	6271;6272	6272					-0.006081429543883132
FPFHESIL	8	Unmodified	_FPFHESIL_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2581787109375	2	495.258185	988.501818	0.66417	0.00032893	-0.88748	-0.00043953	-0.22331	-0.0001106	495.25756907226537	63.88	0.92258	63.88	63.679	64.601	0					46	32	2	0	0	0	0.22517	2	14570	14533;14570		40.449	8.3316	1	196810			4567	7492	3094	3113	6273;6274	6274					0.007106863858211909
FPFHESIL	8	Unmodified	_FPFHESIL_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2593688964844	2	495.258185	988.501818	0.54875	0.00027177	-0.72575	-0.00035944	-0.17701	-8.7664E-05	495.25756550736133	63.707	0.70287	63.778	63.643	64.346	0.071018					35	23	2	0	0	0	0.22517	2	14381	14381;14390		40.449	8.3316	1	229000			4568	7492	3094	3113	6275;6276	6275					0.007106863858211909
FPFHFVDRL	9	Unmodified	_FPFHFVDRL_					0	0	0		ENST00000472220.1_1_2:105708813-105716216:+|nuORF;SIK3-MRPS9|1|fusion;ENSG00000135972|ENST00000258455|MRPS9	ENST00000472220.1_1_2:105708813-105716216:+|nuORF	ENST00000472220.1_1_2:105708813-105716216:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8321533203125	2	589.311284	1176.60801	0.67621	0.0003985	-0.51058	-0.00030089	0.16562	9.7604E-05	589.3110169186245	64.562	0.41875	64.562	64.356	64.775	0					23	14	2	0	0	0	0.11198	1	14757	14757		29.841	17.309	1	187680			4569	2760	3095	3114	6277	6277					0.026774419511411907
FPFHFVDRL	9	Unmodified	_FPFHFVDRL_					0	0	0		ENST00000472220.1_1_2:105708813-105716216:+|nuORF;SIK3-MRPS9|1|fusion;ENSG00000135972|ENST00000258455|MRPS9	ENST00000472220.1_1_2:105708813-105716216:+|nuORF	ENST00000472220.1_1_2:105708813-105716216:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.31103515625	2	589.311284	1176.60801	0.6511	0.0003837	-0.59758	-0.00035216	0.053525	3.1543E-05	589.3109230754064	64.475	0.37447	64.544	64.374	64.748	0.068916					19	13	2	0	0	0	0.15482	1	14574	14574		23.79	7.9426	1	123190			4570	2760	3095	3114	6278	6278					0.026774419511411907
FPFHFVEVL	9	Unmodified	_FPFHFVEVL_					0	0	0		ENST00000577812.5_1_17:80442656-80446030:+|nuORF;nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF	ENST00000577812.5_1_17:80442656-80446030:+|nuORF	ENST00000577812.5_1_17:80442656-80446030:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8028564453125	2	567.80276	1133.59097	0.57921	0.00032888	-1.772	-0.0010062	-1.1928	-0.00067729	567.8025537429013	80.761	1.8889	80.784	80.157	82.046	0.023605					118	51	5	0	0	0	0.1182	1	19560	19560		28.487	9.2299	1	570440			4571	3068	3096	3115	6279	6279					0.029515213453350952
FPFHSAPAL	9	Unmodified	_FPFHSAPAL_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.75848388671875	2	493.758352	985.502152	0.4522	0.00022328	-0.30093	-0.00014859	0.15127	7.4689E-05	493.7581061405082	57.178	1.3599	57.178	56.857	58.217	0					120	48	4	0	0	0	0.05573	2	12596	12596;12676		42.095	18.074	1	1358900			4572	1077	3097	3116	6280;6281	6280					0.008821061056551116
FPFHSAPAL	9	Unmodified	_FPFHSAPAL_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.75836181640625	2	493.758352	985.502152	0.47696	0.0002355	-0.22571	-0.00011145	0.25125	0.00012406	493.75811992860616	57.05	1.1432	57.118	56.827	57.97	0.068375					98	43	3	0	0	0	0.0065046	2	12410	12276;12410		77.984	41.857	1	1140800			4573	1077	3097	3116	6282;6283	6283					0.008821061056551116
FPFILGVTF	9	Unmodified	_FPFILGVTF_					0	0	0			REV__ENSG00000142583|ENST00000377424|SLC2A5	REV__ENSG00000142583|ENST00000377424|SLC2A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2854614257812	2	520.794404	1039.57425	0.84001	0.00043747	1.003	0.00052236	1.843	0.00095983	520.794748608162	80.356	0.25705	80.356	80.228	80.485	0					13	8	3	0	0	0	0.17247	1	19585	19585		21.747	0	1	240090	+		4574	9437	3098	3117	6284	6284					0.0560502045937028
FPFILGVTF	9	Unmodified	_FPFILGVTF_					0	0	0			REV__ENSG00000142583|ENST00000377424|SLC2A5	REV__ENSG00000142583|ENST00000377424|SLC2A5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.28515625	2	520.794404	1039.57425	0.64811	0.00033753	0.35183	0.00018323	0.99994	0.00052076	520.7943862147575	80.548	0.43496	80.572	80.273	80.708	0.023605					24	15	3	0	0	0	0.20845	1	19417	19417		21.747	0	1	358030	+		4575	9437	3098	3117	6285	6285					0.0560502045937028
FPFILGVTF	9	Unmodified	_FPFILGVTF_					0	0	0			REV__ENSG00000142583|ENST00000377424|SLC2A5	REV__ENSG00000142583|ENST00000377424|SLC2A5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	520.794404	1039.57425	0.84001	0.00043747	1.003	0.00052236	1.843	0.00095983	520.794748608162	80.356	0.25705	80.356	80.228	80.485	0	-0.10807	0.0004237	NaN	21.747	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240090	+		4576	9437	3098	3117							0.0560502045937028
FPFNMQELVL	10	Unmodified	_FPFNMQELVL_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3185424804688	2	619.317917	1236.62128	0.22693	0.00014054	0.090689	5.6166E-05	0.31762	0.00019671	619.3179696052977	97.533	0.59741	97.574	97.36	97.957	0.040855					52	30	3	0	0	0	0.44727	1	24646	24646		5.2969	0.76802	1	118940			4577	3572	3099	3118	6286	6286					0.012435119482006485
FPFNPLDF	8	Unmodified	_FPFNPLDF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7450256347656	2	498.744911	995.475269	0.39946	0.00019923	-0.097578	-4.8667E-05	0.30188	0.00015056	498.7447878994034	94.73	0.88738	94.73	94.486	95.374	0					93	37	4	0	0	0	0.15358	4	23953	23905;23953;23999;24048		46.021	6.0636	1	1301200			4578	4021	3100	3119	6287;6288;6289;6290	6288					-0.02265002505521352
FPFNPLDF	8	Unmodified	_FPFNPLDF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.74505615234375	2	498.744911	995.475269	0.32042	0.00015981	-0.044124	-2.2006E-05	0.2763	0.0001378	498.7448654783087	94.716	0.92976	94.754	94.477	95.407	0.038094					97	38	4	0	0	0	0.25696	4	23787	23746;23787;23832;23892		37.974	5.6685	1	1322500			4579	4021	3100	3119	6291;6292;6293;6294	6292					-0.02265002505521352
FPFPFTPYSI	10	Unmodified	_FPFPFTPYSI_					0	0	0		ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000256263|A8MPP1|DDX11L8;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.3095092773438	2	608.307875	1214.6012	0.61149	0.00037198	0.60352	0.00036713	1.215	0.0007391	608.3081496077918	99.851	0.87034	99.851	99.798	100.67	0					75	48	2	0	0	0	0.28643	1	25508	25508		24.021	8.1734	1	203220			4580	7058	3101	3120	6295	6295					0.0024808427988318726
FPFPFTPYSI	10	Unmodified	_FPFPFTPYSI_					0	0	0		ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000256263|A8MPP1|DDX11L8;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.3077392578125	2	608.307875	1214.6012	0.76625	0.00046612	-0.041476	-2.523E-05	0.72478	0.00044089	608.3076710132904	99.857	0.69669	99.9	99.791	100.49	0.042831					54	38	2	0	0	0	0.24016	1	25359	25359		29.082	13.234	1	156200			4581	7058	3101	3120	6296	6296					0.0024808427988318726
FPFPKPDLIF	10	Unmodified	_FPFPKPDLIF_					0	0	0		ENST00000314686.9_1_3:40519470-40525181:+|nuORF;nc|ENSG00000177873|Q8N2I2-2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619	ENST00000314686.9_1_3:40519470-40525181:+|nuORF	ENST00000314686.9_1_3:40519470-40525181:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.8389282226562	2	610.839342	1219.66413	0.41878	0.00025581	-0.50491	-0.00030842	-0.086134	-5.2614E-05	610.8388409071376	84.179	0.34732	84.201	83.948	84.295	0.021744					26	12	3	0	0	0	0.30517	1	20573	20573		20.415	3.4722	1	152110			4582	4720	3102	3121	6297	6297					0.06308650067944654
FPFPKPDLIF	10	Unmodified	_FPFPKPDLIF_					0	0	0		ENST00000314686.9_1_3:40519470-40525181:+|nuORF;nc|ENSG00000177873|Q8N2I2-2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619	ENST00000314686.9_1_3:40519470-40525181:+|nuORF	ENST00000314686.9_1_3:40519470-40525181:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	610.839342	1219.66413	0.63898	0.00039031	-0.67727	-0.00041371	-0.038295	-2.3392E-05	611.3403946816222	84.19	0.25217	84.19	83.99	84.242	0	-0.0055159	-0.00016256	NaN	20.415	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140100			4583	4720	3102	3121							0.06308650067944654
FPFPMDNQF	9	Oxidation (M)	_FPFPM(Oxidation (M))DNQF_		FPFPM(1)DNQF		FPFPM(71)DNQF	0	0	1		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.8164672851562	2	579.749867	1157.48518	0.38383	0.00022253	-0.29343	-0.00017012	0.090397	5.2408E-05	580.2516462003813	77.513	1.1776	77.513	77.27	78.448	0					124	46	4	0	0	0	0.015182	1	18720	18720		71.134	52.987	1	677390			4584	1271	3103	3122	6298	6298		75			-0.08726182562463691
FPFPMDNQF	9	Oxidation (M)	_FPFPM(Oxidation (M))DNQF_		FPFPM(1)DNQF		FPFPM(55)DNQF	0	0	1		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7498779296875	2	579.749867	1157.48518	0.59878	0.00034714	-0.70163	-0.00040677	-0.10285	-5.9628E-05	579.7498613683438	77.565	1.7792	77.6	76.876	78.655	0.034485					144	67	5	0	0	0	0.024893	1	18616	18616		54.774	29.374	1	449490			4585	1271	3103	3122	6299	6299		75			-0.08726182562463691
FPFPVTVSL	9	Unmodified	_FPFPVTVSL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.78411865234375	2	503.784036	1005.55352	0.51466	0.00025928	0.014843	7.4775E-06	0.52951	0.00026676	503.78388071699186	93.098	1.0565	93.098	92.713	93.77	0					111	40	4	0	0	0	0.0010237	4	23432	23386;23432;23479;23523		123.1	59.533	1	941560			4586	2367	3104	3123	6300;6301;6302;6303	6301					0.0509643007970908
FPFPVTVSL	9	Unmodified	_FPFPVTVSL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7842712402344	2	503.784036	1005.55352	0.47857	0.0002411	0.0041141	2.0726E-06	0.48268	0.00024317	503.7839232191655	93.039	0.93781	93.076	92.698	93.635	0.037369					117	38	4	0	0	0	0.0076571	4	23229	23229;23270;23310;23355		74.423	30.016	1	1155000			4587	2367	3104	3123	6304;6305;6306;6307	6304					0.0509643007970908
FPFPYLDTF	9	Unmodified	_FPFPYLDTF_					0	0	0		nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3	nc|ENSG00000049246|P56645|PER3	nc|ENSG00000049246|P56645|PER3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7796630859375	2	573.778951	1145.54335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.497	1	98.497	97.997	98.997	0								0	0	0	0.16627	1	25088	25088		23.148	15.238	1				4588	572	3105	3124	6308	6308					-0.023601776455507206
FPFPYLDTF	9	Unmodified	_FPFPYLDTF_					0	0	0		nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3	nc|ENSG00000049246|P56645|PER3	nc|ENSG00000049246|P56645|PER3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7807006835938	2	573.778951	1145.54335	0.53192	0.0003052	-1.9873	-0.0011402	-1.4553	-0.00083504	574.2772105787715	98.546	0.2225	98.588	98.482	98.705	0.041931					17	13	2	0	0	0	0.1182	1	24941	24941		28.487	17.663	1	91813			4589	572	3105	3124	6309	6309					-0.023601776455507206
FPFQDIEL	8	Unmodified	_FPFQDIEL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7554016113281	2	504.755475	1007.4964	0.045888	2.3162E-05	-0.032908	-1.661E-05	0.01298	6.5518E-06	504.75526092802835	86.938	1.3094	86.938	86.639	87.948	0					151	52	4	0	0	0	0.024005	3	21574	21574;21623;21665		74.929	24.074	1	4675100			4590	3194	3106	3125	6310;6311;6312	6310					-0.007050371966784041
FPFQDIEL	8	Unmodified	_FPFQDIEL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7553405761719	2	504.755475	1007.4964	0.096189	4.8552E-05	0.016509	8.3332E-06	0.1127	5.6885E-05	504.75526918118834	86.926	0.94961	86.953	86.63	87.58	0.027573					127	41	4	0	0	0	0.035195	3	21432	21390;21432;21477		65.235	14.38	1	3650300			4591	3194	3106	3125	6313;6314;6315	6314					-0.007050371966784041
FPFREELL	8	Unmodified	_FPFREELL_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.784423828125	2	525.784567	1049.55458	0.53289	0.00028018	-1.1679	-0.00061408	-0.63504	-0.0003339	525.7845314601472	66.59	0.76674	66.656	66.308	67.074	0.065071					61	28	3	0	0	0	0.28068	2	15217	15217;15268		36.127	9.2434	1	241170			4592	5478	3107	3126	6316;6317	6316					0.03178644448621526
FPFSDKLGEL	10	Unmodified	_FPFSDKLGEL_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant;CLINT1|p.P474Yfs*4|1|0.41|ENSG00000113282|chr5:157789473-157789477|GGCAA/-|frameshift_variant	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.8004760742188	2	576.800414	1151.58628	0.48449	0.00027946	-0.21142	-0.00012195	0.27307	0.00015751	576.8001808321086	70.863	0.96819	70.863	70.447	71.415	0					87	33	3	0	0	0	0.021044	2	16720	16720;16795		67.081	22.674	1	596300			4593	1792	3108	3127	6318;6319	6318					0.016545924119100164
FPFSRPELL	9	Unmodified	_FPFSRPELL_					0	0	0		nc|ENSG00000041988|Q8WTV1-4|THAP3;nc|ENSG00000041988|Q8WTV1-3|THAP3;ENSG00000041988|ENST00000054650|THAP3	nc|ENSG00000041988|Q8WTV1-4|THAP3	nc|ENSG00000041988|Q8WTV1-4|THAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8268432617188	2	553.305667	1104.59678	0.49628	0.0002746	-0.18361	-0.00010159	0.31267	0.000173	553.3054022059821	68.069	0.56416	68.069	67.812	68.377	0					33	20	2	0	0	0	0.13341	1	15807	15807		26.268	4.7312	1	130040			4594	541	3109	3128	6320	6320					0.048666198569890184
FPFSRPELL	9	Unmodified	_FPFSRPELL_					0	0	0		nc|ENSG00000041988|Q8WTV1-4|THAP3;nc|ENSG00000041988|Q8WTV1-3|THAP3;ENSG00000041988|ENST00000054650|THAP3	nc|ENSG00000041988|Q8WTV1-4|THAP3	nc|ENSG00000041988|Q8WTV1-4|THAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.826904296875	2	553.305667	1104.59678	0.71274	0.00039436	-0.2583	-0.00014292	0.45444	0.00025144	553.3053744934257	68.006	0.51423	68.07	67.845	68.359	0.063507					32	18	2	0	0	0	0.19398	1	15607	15607		19.257	1.1106	1	164870			4595	541	3109	3128	6321	6321					0.048666198569890184
FPFSSIPTTL	10	Unmodified	_FPFSSIPTTL_					0	0	0			REV__ENST00000518894.1_1_5:172382906-172386340:-|nuORF	REV__ENST00000518894.1_1_5:172382906-172386340:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.24560546875	2	555.297507	1108.58046	0.95362	0.00052954	-0.68483	-0.00038028	0.2688	0.00014926	555.297026447917	67.301	0.92319	67.366	66.982	67.905	0.065071					52	31	2	0	0	0	0.31616	1	15396	15396		10.074	0	1	143030	+		4596	12285	3110	3129	6322	6322					0.03051493900238711
FPFTATFYV	9	Unmodified	_FPFTATFYV_					0	0	0			REV__SLC6A6|p.A255T|1|0.29|ENSG00000131389|chr3:14466546-14466546|G/A|missense_variant	REV__SLC6A6|p.A255T|1|0.29|ENSG00000131389|chr3:14466546-14466546|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.76416015625	2	546.773668	1091.53278	0.19518	0.00010672	3.8757	0.0021191	4.0709	0.0022259	546.7776513082273	71.861	0.61204	71.917	71.54	72.152	0.055931					22	21	2	0	0	0	0.29576	1	16873	16873		7.2892	1.0834	1	103780	+		4597	9084	3111	3130	6323	6323					-0.009321602999534662
FPFTFPLGLF	10	Unmodified	_FPFTFPLGLF_					0	0	0		ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.78955078125	2	593.320786	1184.62702	0.66434	0.00039417	-2.8756	-0.0017062	-2.2113	-0.001312	593.3186643924184	84.064	0.34261	84.064	83.9	84.242	0					26	11	3	0	0	0	0.31771	1	20746	20746		4.3292	0.73274	1	211210			4598	3324	3112	3131	6324	6324					0.042089785221833154
FPFTREEAL	9	Unmodified	_FPFTREEAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2835693359375	2	555.284931	1108.55531	0.4274	0.00023733	-0.97726	-0.00054266	-0.54986	-0.00030533	555.2842713850221	56.962	0.73338	56.962	56.674	57.408	0					47	26	2	0	0	0	0.11198	1	12436	12436		29.841	5.82	1	143190			4599	2364	3113	3132	6325	6325					0.005374390976612631
FPFTREEAL	9	Unmodified	_FPFTREEAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8060913085938	2	555.284931	1108.55531	0.61004	0.00033875	-0.78381	-0.00043524	-0.17377	-9.649E-05	555.284500749065	56.951	0.76392	57.017	56.571	57.335	0.066452					46	27	2	0	0	0	0.23478	1	12246	12246		17.113	0.96379	1	133220			4600	2364	3113	3132	6326	6326					0.005374390976612631
FPFVRELLL	9	Unmodified	_FPFVRELLL_					0	0	0		ENST00000502512.1_3_1:2441299-2442819:-|nuORF;ENST00000471361.1_1_1:2441894-2444451:-|nuORF;ENSG00000157881|ENST00000378466|PANK4	ENST00000502512.1_3_1:2441299-2442819:-|nuORF	ENST00000502512.1_3_1:2441299-2442819:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7282104492188	2	567.33951	1132.66447	0.38683	0.00021946	0.27667	0.00015696	0.66349	0.00037643	567.339577621016	81.735	0.51675	81.757	81.475	81.992	0.021866					32	18	3	0	0	0	0.24819	1	19793	19793		10.8	2.0541	1	155690			4601	3670	3114	3133	6327	6327					0.1034406978781135
FPFWPAKAL	9	Unmodified	_FPFWPAKAL_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.8002319335938	2	538.80002	1075.58549	0.51103	0.00027534	-0.2663	-0.00014348	0.24473	0.00013186	538.7998764726742	75.069	0.73775	75.069	74.823	75.561	0					66	27	3	0	0	0	0.011655	1	17957	17957		64.236	31.931	1	871200			4602	1230	3115	3134	6328	6328					0.050718425535023925
FPFWPAKAL	9	Unmodified	_FPFWPAKAL_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7999267578125	2	538.80002	1075.58549	0.55166	0.00029724	-0.3885	-0.00020932	0.16316	8.7911E-05	538.7998433912923	75.07	0.70523	75.114	74.841	75.546	0.044037					54	25	3	0	0	0	0.0053304	1	17787	17787		81.613	53.984	1	868930			4603	1230	3115	3134	6329	6329					0.050718425535023925
FPFYYEIKM	9	Oxidation (M)	_FPFYYEIKM(Oxidation (M))_		FPFYYEIKM(1)		FPFYYEIKM(96)	0	0	1		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2987670898438	2	627.299193	1252.58383	0.54417	0.00034136	-0.30259	-0.00018982	0.24157	0.00015154	627.2988069088776	65.861	1.1372	65.861	65.598	66.735	0					115	42	4	0	0	0	0.0043591	4	15125	15125;15168;15224;15300		96.367	72.346	1	1628500			4604	4292	3116	3135	6330;6331;6332;6333	6330		258			-0.03235579317424708
FPFYYEIKM	9	Oxidation (M)	_FPFYYEIKM(Oxidation (M))_		FPFYYEIKM(1)		FPFYYEIKM(110)	0	0	1		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2984008789062	2	627.299193	1252.58383	0.24326	0.0001526	-0.75172	-0.00047155	-0.50846	-0.00031896	627.2984785980781	67.823	3.9119	67.823	66.735	70.647	0					287	144	3	0	0	0	0.0034419	10	15728	15526;15728;15769;15811;15861;15904;15946;15992;16040;16089		106.94	82.92	1	1749000			4605	4292	3116	3135	6334;6335;6336;6337;6338;6339;6340;6341;6342;6343	6335		258			-0.03235579317424708
FPFYYEIKM	9	Oxidation (M)	_FPFYYEIKM(Oxidation (M))_		FPFYYEIKM(1)		FPFYYEIKM(86)	0	0	1		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.2992553710938	2	627.299193	1252.58383	0.57607	0.00036137	-0.63676	-0.00039944	-0.060693	-3.8072E-05	627.2985963456492	65.827	1.2261	65.894	65.615	66.841	0.066872					124	47	4	0	0	0	0.0046221	7	15011	14967;15011;15056;15100;15109;15152;15176		86.332	57.25	1	2436700			4606	4292	3116	3135	6344;6345;6346;6347;6348;6349;6350	6345		258			-0.03235579317424708
FPFYYEIKM	9	Oxidation (M)	_FPFYYEIKM(Oxidation (M))_		FPFYYEIKM(1)		FPFYYEIKM(86)	0	0	1		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.298828125	2	627.299193	1252.58383	0.54934	0.0003446	-1.178	-0.00073896	-0.62866	-0.00039436	627.2982399588426	67.848	2.4881	67.912	66.724	69.212	0.063507					248	86	5	0	0	0	0.0046221	11	15632	15323;15586;15632;15681;15716;15732;15778;15812;15826;15873;15932		86.332	62.311	1	1907100			4607	4292	3116	3135	6351;6352;6353;6354;6355;6356;6357;6358;6359;6360;6361	6353		258			-0.03235579317424708
FPFYYEIKM	9	Unmodified	_FPFYYEIKM_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.3014526367188	2	619.301736	1236.58892	0.030307	1.8769E-05	-0.044459	-2.7533E-05	-0.014152	-8.7641E-06	619.3015833691563	74.894	1.0336	74.894	74.527	75.561	0					88	38	3	0	0	0	0.0043591	4	17861	17861;17903;17960;18010		96.367	73.63	1	1279400			4608	4292	3116	3136	6362;6363;6364;6365	6362					-0.019912754548158773
FPFYYEIKM	9	Unmodified	_FPFYYEIKM_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.301513671875	2	619.301736	1236.58892	0.046445	2.8763E-05	-0.0812	-5.0287E-05	-0.034755	-2.1524E-05	619.3016406787121	74.881	0.96287	74.927	74.564	75.527	0.045662					74	34	4	0	0	0	0.0016252	3	17745	17696;17745;17809		118.07	74.21	1	878020			4609	4292	3116	3136	6366;6367;6368	6367					-0.019912754548158773
FPGEAERVAF	10	Unmodified	_FPGEAERVAF_					0	0	0		ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.782958984375	2	561.782556	1121.55056	0.64	0.00035954	0.76423	0.00042933	1.4042	0.00078887	561.7830178037251	54.465	1.4249	54.465	53.987	55.411	0					119	57	3	0	0	0	0.086038	5	11596	11596;11644;11690;11732;11757		47.732	24.996	1	334230			4610	5167	3117	3137	6369;6370;6371;6372;6373	6369					-0.005354450451022785
FPGEAERVAF	10	Unmodified	_FPGEAERVAF_					0	0	0		ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7830200195312	2	561.782556	1121.55056	0.6599	0.00037072	0.95993	0.00053927	1.6198	0.00091	561.7830189797666	54.451	1.1789	54.517	53.945	55.123	0.065128					99	53	2	0	0	0	0.044868	5	11486	11419;11442;11486;11531;11580		59.052	36.316	1	304340			4611	5167	3117	3137	6374;6375;6376;6377;6378	6376					-0.005354450451022785
FPGEERTR	8	Unmodified	_FPGEERTR_					0	0	0			REV__nc|ENSG00000155229|Q96T76-9|MMS19	REV__nc|ENSG00000155229|Q96T76-9|MMS19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7432861328125	2	496.251423	990.488293	-0.016732	-8.3035E-06	0.12535	6.2206E-05	0.10862	5.3902E-05	496.2514214642185	28.62	0.60713	28.702	28.492	29.1	0.082132					74	38	3	0	0	0	0.53817	1	3821	3821		2.5775	0	1	190620	+		4612	12817	3118	3138	6379	6379					-0.007331713934263462
FPGELIKNL	9	Unmodified	_FPGELIKNL_					0	0	0			REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.80029296875	2	515.800217	1029.58588	0.4232	0.00021829	0.34124	0.00017601	0.76444	0.0003943	515.800253870731	62.839	1.5694	62.912	62.261	63.831	0.072697					151	59	3	0	0	0	0.24767	1	13900	13900		13.042	0	1	1220100	+		4613	11785	3119	3139	6380	6380					0.07227217482704873
FPGFFSPML	9	Oxidation (M)	_FPGFFSPM(Oxidation (M))L_		FPGFFSPM(1)L		FPGFFSPM(94)L	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7545166015625	2	529.754421	1057.49429	0.4068	0.00021551	0.19273	0.0001021	0.59953	0.0003176	529.7544073230223	88.49	1.2079	88.49	88.139	89.347	0					110	48	4	0	0	0	0.0044242	3	22074	21980;22027;22074		93.883	59.696	1	626770			4614	4446	3120	3140	6381;6382;6383	6383		266			-0.032157892061377424
FPGFFSPML	9	Oxidation (M)	_FPGFFSPM(Oxidation (M))L_		FPGFFSPM(1)L		FPGFFSPM(94)L	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2792358398438	2	529.754421	1057.49429	0.19879	0.00010531	1.3161	0.00069723	1.5149	0.00080254	529.7551070309914	90.019	1.8326	90.019	89.169	91.001	0					141	71	3	0	0	0	0.00056574	1	22391	22391		93.883	63.659	1	846560			4615	4446	3120	3140	6384	6384		266			-0.032157892061377424
FPGFFSPML	9	Oxidation (M)	_FPGFFSPM(Oxidation (M))L_		FPGFFSPM(1)L		FPGFFSPM(82)L	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.75439453125	2	529.754421	1057.49429	0.39739	0.00021052	0.31052	0.0001645	0.70791	0.00037502	529.754442828121	88.414	1.1377	88.444	88.11	89.248	0.030037					112	45	3	0	0	0	0.0052492	4	21850	21803;21850;21894;21939		81.864	47.677	1	698790			4616	4446	3120	3140	6385;6386;6387;6388	6386		266			-0.032157892061377424
FPGFFSPML	9	Oxidation (M)	_FPGFFSPM(Oxidation (M))L_		FPGFFSPM(1)L		FPGFFSPM(110)L	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.279296875	2	529.754421	1057.49429	0.17778	9.418E-05	1.2801	0.00067813	1.4579	0.00077231	529.7549410478628	89.89	1.024	89.924	89.035	90.059	0.034065					70	38	3	0	0	0	0.00025104	1	22220	22220		106.85	72.658	1	809580			4617	4446	3120	3140	6389	6389		266			-0.032157892061377424
FPGFFSPML	9	Oxidation (M)	_FPGFFSPM(Oxidation (M))L_					0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	529.754421	1057.49429	0.078495	4.1583E-05	0.97158	0.0005147	1.0501	0.00055628	529.7554265345794	90.089	0.90531	90.123	90.059	90.965	0.034065	0.051924	-0.00025595	NaN	93.883	66	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292790			4618	4446	3120	3140				266			-0.032157892061377424
FPGGLEANPFI	11	Unmodified	_FPGGLEANPFI_					0	0	0			REV__EGR2|p.G123Efs*101|1|0.07|ENSG00000122877|chr10:62814270-62814271|-/TT|frameshift_variant	REV__EGR2|p.G123Efs*101|1|0.07|ENSG00000122877|chr10:62814270-62814271|-/TT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7737426757812	2	581.300581	1160.58661	0.56234	0.00032689	0.30848	0.00017932	0.87082	0.00050621	581.3006168448602	88.285	0.46096	88.315	88.196	88.657	0.030037					28	18	2	0	0	0	0.31023	1	21902	21902		8.1555	1.0538	1	146570	+		4619	7907	3121	3141	6390	6390					0.012740121317619924
FPGRLRWP	8	Unmodified	_FPGRLRWP_					0	0	0			REV__HDGF|p.E181Rfs*144|1|0.15|ENSG00000143321|chr1:156743827-156743827|C/-|frameshift_variant	REV__HDGF|p.E181Rfs*144|1|0.15|ENSG00000143321|chr1:156743827-156743827|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7933349609375	2	514.793061	1027.57157	0.59049	0.00030398	0.1404	7.2275E-05	0.73088	0.00037625	514.7930635395767	97.264	0.66109	97.305	97.076	97.737	0.040855					66	32	3	0	0	0	0.50159	1	24612	24612		12.532	12.532	1	505160	+		4620	12665	3122	3142	6391	6391					0.05888609845078463
FPGRLRWP	8	Unmodified	_FPGRLRWP_					0	0	0			REV__HDGF|p.E181Rfs*144|1|0.15|ENSG00000143321|chr1:156743827-156743827|C/-|frameshift_variant	REV__HDGF|p.E181Rfs*144|1|0.15|ENSG00000143321|chr1:156743827-156743827|C/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	514.793061	1027.57157	0.59049	0.00030398	0.1404	7.2275E-05	0.73088	0.00037625	514.7930635395767	97.264	0.66109	97.305	97.076	97.737	0.040855	0.0177	1.3643E-05	NaN	12.532	66	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505160	+		4621	12665	3122	3142							0.05888609845078463
FPHANIWDIL	10	Unmodified	_FPHANIWDIL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.3218994140625	2	613.321848	1224.62914	0.16153	9.9071E-05	0.46664	0.0002862	0.62817	0.00038527	613.3217831677525	82.779	0.68387	82.779	82.595	83.279	0					55	23	4	0	0	0	0.12534	1	20322	20322		49.933	22.304	1	688280			4622	1320	3123	3143	6392	6392					0.025814072600041982
FPHANIWDIL	10	Unmodified	_FPHANIWDIL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.3217163085938	2	613.321848	1224.62914	0.10639	6.525E-05	0.41236	0.00025291	0.51875	0.00031816	613.3218337559309	82.81	0.68649	82.832	82.617	83.304	0.021744					52	23	3	0	0	0	0.336	1	20143	20143		21.537	0	1	943880			4623	1320	3123	3143	6393	6393					0.025814072600041982
FPHDNVEDL	9	Unmodified	_FPHDNVEDL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7826538085938	2	543.248546	1084.48254	0.41702	0.00022655	0.079673	4.3282E-05	0.49669	0.00026983	543.2483992441672	47.23	0.64497	47.23	46.967	47.612	0					47	21	3	0	0	0	0.23478	1	9500	9500		12.241	1.4167	1	158160			4624	4727	3124	3144	6394	6394					-0.05632314695776586
FPHDNVEDL	9	Unmodified	_FPHDNVEDL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	543.248546	1084.48254	0.42227	0.0002294	0.20502	0.00011138	0.62729	0.00034078	543.2485582571451	47.122	0.65017	47.205	46.91	47.56	0.083092	-0.012301	5.3759E-05	NaN	12.241	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151950			4625	4727	3124	3144							-0.05632314695776586
FPHGGGFVL	9	Unmodified	_FPHGGGFVL_					0	0	0		ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7453308105469	2	465.745245	929.475937	-0.054418	-2.5345E-05	-0.10339	-4.8153E-05	-0.15781	-7.3498E-05	465.74512197035915	58.511	0.75396	58.511	58.256	59.01	0					48	27	2	0	0	0	0.2796	1	12978	12978		9.3474	2.6243	1	246940			4626	3620	3125	3145	6395	6395					0.008378369341926373
FPHGGGFVL	9	Unmodified	_FPHGGGFVL_					0	0	0		ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7449645996094	2	465.745245	929.475937	0.00037655	1.7537E-07	0.13708	6.3844E-05	0.13746	6.4019E-05	465.7451116384012	58.448	0.83553	58.518	58.184	59.02	0.070477					50	29	2	0	0	0	0.2796	1	12754	12754		9.3474	1.4373	1	290790			4627	3620	3125	3145	6396	6396					0.008378369341926373
FPHHPLFGF	9	Unmodified	_FPHHPLFGF_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.26708984375	2	549.779619	1097.54469	0.27624	0.00015187	0.46809	0.00025735	0.74433	0.00040922	550.2819275585688	53.134	0.52085	53.134	52.841	53.361	0					23	20	2	0	0	0	0.25416	1	11315	11315		5.2307	0	1	72718	+		4628	8836	3126	3146	6397	6397					-0.00018498766098673514
FPHHPLFGF	9	Unmodified	_FPHHPLFGF_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.779619	1097.54469	0.4598	0.00025279	-3.0245	-0.0016628	-2.5647	-0.00141	549.7774344337812	52.938	0.30438	53.003	52.802	53.107	0.06543	-0.06513	-0.0027671	NaN	5.2307	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66993	+		4629	8836	3126	3146							-0.00018498766098673514
FPHIDEFFTL	10	Unmodified	_FPHIDEFFTL_					0	0	0		ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8154907226562	2	633.313689	1264.61282	0.2462	0.00015592	0.17267	0.00010935	0.41887	0.00026527	633.3139857859547	85.81	0.49415	85.81	85.631	86.125	0					29	20	2	0	0	0	0.35104	1	21209	21209		17.113	7.7298	1	206020			4630	4417	3127	3147	6398	6398					-0.008897186967715243
FPHIDEFFTL	10	Unmodified	_FPHIDEFFTL_					0	0	0		ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.31396484375	2	633.313689	1264.61282	0.49882	0.00031591	-0.11347	-7.1865E-05	0.38534	0.00024404	633.3134847986861	85.808	0.48912	85.833	85.599	86.088	0.025169					28	17	2	0	0	0	0.25276	1	21061	21061		27.629	10.516	1	407590			4631	4417	3127	3147	6399	6399					-0.008897186967715243
FPHISQCEEL	10	Unmodified	_FPHISQCEEL_					0	0	0		nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6	nc|ENSG00000198055|P43250-3|GRK6	nc|ENSG00000198055|P43250-3|GRK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.779296875	2	601.779156	1201.54376	0.31004	0.00018658	-0.15309	-9.2127E-05	0.15695	9.4449E-05	601.7790745950954	49.426	3.0019	49.426	48.123	51.124	0					274	104	4	0	0	0	0.28643	1	10195	10195		24.021	1.2843	1	563460			4632	5341	3128	3148	6400	6400					-0.04895125987945903
FPHKFEISF	9	Unmodified	_FPHKFEISF_					0	0	0		ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2984619140625	2	576.297842	1150.58113	-0.066267	-3.8189E-05	1.0073	0.0005805	0.94102	0.00054231	576.2984037466022	58.521	0.45923	58.521	58.386	58.846	0					33	15	3	0	0	0	0.14444	1	12919	12919		24.991	4.5373	1	287270			4633	5323	3129	3149	6401	6401					0.011863333399332987
FPHKFEISF	9	Unmodified	_FPHKFEISF_					0	0	0		ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.298095703125	2	576.297842	1150.58113	0.21596	0.00012446	0.67397	0.00038841	0.88993	0.00051287	576.2981704666008	58.415	0.51524	58.486	58.348	58.863	0.070477					40	17	4	0	0	0	0.08788	1	12736	12736		49.554	24.155	1	275780			4634	5323	3129	3149	6402	6402					0.011863333399332987
FPHLLQPVL	9	Unmodified	_FPHLLQPVL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.318603515625	2	532.318577	1062.6226	0.4142	0.00022048	0.15519	8.2609E-05	0.56938	0.00030309	532.3185776914255	71.316	1.5946	71.316	71.037	72.631	0					115	55	4	0	0	0	0.026569	1	16774	16774		53.576	19.473	1	2108100			4635	2246	3130	3150	6403	6403					0.0937951409928246
FPHLLQPVL	9	Unmodified	_FPHLLQPVL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.318603515625	2	532.318577	1062.6226	0.55695	0.00029647	-0.0312	-1.6608E-05	0.52575	0.00027987	532.3185090687293	71.243	1.4672	71.302	70.997	72.464	0.058578					110	52	4	0	0	0	0.017037	1	16603	16603		60.39	38.643	1	2175200			4636	2246	3130	3150	6404	6404					0.0937951409928246
FPHLQDAQVKL	11	Unmodified	_FPHLQDAQVKL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.2130126953125	3	432.575067	1294.70337	0.64055	0.00027709	-1.3583	-0.00058756	-0.71773	-0.00031047	432.5743957316982	53.883	0.45279	53.883	53.711	54.164	0					24	15	2	0	0	0	0.31036	1	11505	11505		8.7518	4.2229	1	90163			4637	925	3131	3151	6405	6405					0.06780750351504139
FPHLTVVLL	9	Unmodified	_FPHLTVVLL_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.8211059570312	2	519.820953	1037.62735	0.29324	0.00015243	0.37376	0.00019429	0.667	0.00034672	519.8210866427684	78.471	2.0954	78.471	78.013	80.109	0					224	72	5	0	0	0	0.0021353	5	18960	18960;19005;19049;19107;19151		114.94	78.9	1	10386000			4638	2692	3132	3152	6406;6407;6408;6409;6410	6406					0.11004398242039315
FPHLTVVLL	9	Unmodified	_FPHLTVVLL_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.8213500976562	2	519.820953	1037.62735	0.38337	0.00019928	0.056083	2.9153E-05	0.43945	0.00022844	519.8211195961259	78.447	1.2033	78.477	77.995	79.198	0.030159					159	41	5	0	0	0	0.0021353	4	18836	18788;18836;18879;18930		114.94	78.9	1	21450000			4639	2692	3132	3152	6411;6412;6413;6414	6412					0.11004398242039315
FPHMLFMV	8	Unmodified	_FPHMLFMV_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B;chr6:31669172-31669328|522|13.99|0.0|20.42|+|ENST00000677536|CSNK2B,CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7911682128906	2	511.253534	1020.49252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.15	1	93.187	92.687	93.687	0.037369								0	0	0	0.38822	1	23302	23302		2.8892	0.31174	1				4640	175	3133	3153	6415	6415					-0.016911214957303855
FPHPHVQWL	9	Unmodified	_FPHPHVQWL_					0	0	0		sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8050537109375	2	580.803626	1159.5927	0.11066	6.4272E-05	0.52104	0.00030262	0.6317	0.00036689	580.8038796736591	106.3	0.88789	106.3	105.95	106.84	0					191	83	4	0	0	0	0.26684	2	27513	27513;27519		10.824	10.824	1	709890			4641	13390	3134	3154	6416;6417	6416					0.019285751539655394
FPHPHVQWL	9	Unmodified	_FPHPHVQWL_					0	0	0		sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.32421875	2	580.803626	1159.5927	0.48415	0.00028119	0.22527	0.00013084	0.70942	0.00041203	580.8037067482127	106.27	0.80822	106.3	105.96	106.77	0.029739					231	89	4	0	0	0	0.25979	4	27308	27268;27303;27308;27313		11.64	11.64	1	610200			4642	13390	3134	3154	6418;6419;6420;6421	6420					0.019285751539655394
FPHPLPSL	8	Unmodified	_FPHPLPSL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;SF1-HRASLS2|1|fusion;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;SF1-HRASLS2|2|fusion;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2552185058594	2	454.255446	906.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.103	1	59.103	58.603	59.603	0								0	0	0	0.38081	1	13082	13082		26.341	5.4701	1				4643	4261	3135	3155	6422	6422					0.039350075939978524
FPHPLPSL	8	Unmodified	_FPHPLPSL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;SF1-HRASLS2|1|fusion;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;SF1-HRASLS2|2|fusion;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2560119628906	2	454.255446	906.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.257	1	59.257	58.757	59.757	0								0	0	0	0.38796	1	13129	13129		14.582	4.3983	1				4644	4261	3135	3155	6423	6423					0.039350075939978524
FPIAEVFTL	9	Unmodified	_FPIAEVFTL_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7896118164062	2	518.789318	1035.56408	0.34863	0.00018087	0.1117	5.7948E-05	0.46033	0.00023881	518.7893520180407	94.969	0.80956	94.969	94.63	95.439	0					104	32	4	0	0	0	4.1078E-06	2	24019	23979;24019		154.46	116.31	1	3176100			4645	5459	3136	3156	6424;6425	6425					0.047724127341325584
FPIAEVFTL	9	Unmodified	_FPIAEVFTL_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7894897460938	2	518.789318	1035.56408	0.237	0.00012295	0.29247	0.00015173	0.52947	0.00027468	518.7894084846228	94.866	0.86531	94.904	94.612	95.477	0.038872					114	35	4	0	0	0	2.6167E-05	2	23816	23816;23857		139.54	93.523	1	2934600			4646	5459	3136	3156	6426;6427	6426					0.047724127341325584
FPIAKISPTF	10	Unmodified	_FPIAKISPTF_					0	0	0			REV__ENSG00000255582|ENST00000542433|OR10G2	REV__ENSG00000255582|ENST00000542433|OR10G2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.813232421875	2	560.823692	1119.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.936	1	83.936	83.436	84.436	0								0	0	0	0.32245	1	20661	20661		14.838	0.93222	1		+		4647	11092	3137	3157	6428	6428					0.07780077033839916
FPIDDVFVGM	10	Oxidation (M)	_FPIDDVFVGM(Oxidation (M))_		FPIDDVFVGM(1)		FPIDDVFVGM(71)	0	0	1		nc|ENSG00000176383|Q9C0J1-2|B3GNT4;ENSG00000176383|ENST00000324189|B3GNT4	nc|ENSG00000176383|Q9C0J1-2|B3GNT4	nc|ENSG00000176383|Q9C0J1-2|B3GNT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2735595703125	2	578.273175	1154.5318	0.67626	0.00039106	-1.1255	-0.00065085	-0.44924	-0.00025979	578.2723620781431	84.769	1.2331	84.793	84.561	85.794	0.023125					128	56	3	0	0	0	0.016242	3	20715	20715;20759;20811		71.134	48.397	1	557760			4648	4660	3138	3158	6429;6430;6431	6429		273			-0.039287427311819556
FPIDLLDTL	9	Unmodified	_FPIDLLDTL_					0	0	0		nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7919311523438	2	523.792058	1045.56956	0.40304	0.00021111	-0.24761	-0.00012969	0.15543	8.1413E-05	523.7917898860153	100.35	0.96792	100.35	99.939	100.91	0					122	54	3	0	0	0	0.0025191	6	25665	25558;25582;25590;25623;25665;25710		112.59	55.122	1	569150			4649	3980	3139	3159	6432;6433;6434;6435;6436;6437	6436					0.04860091525961252
FPIDLLDTL	9	Unmodified	_FPIDLLDTL_					0	0	0		nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7921752929688	2	523.792058	1045.56956	0.38978	0.00020416	-0.19764	-0.00010352	0.19214	0.00010064	523.7918598959884	100.33	0.807	100.38	99.956	100.76	0.042839					114	44	3	0	0	0	0.0042542	4	25485	25402;25442;25485;25525		100.37	52.026	1	534270			4650	3980	3139	3159	6438;6439;6440;6441	6440					0.04860091525961252
FPIEAGDMF	9	Oxidation (M)	_FPIEAGDM(Oxidation (M))F_		FPIEAGDM(1)F		FPIEAGDM(82)F	0	0	1		nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7315063476562	2	521.731143	1041.44773	0.33471	0.00017463	0.19708	0.00010282	0.53179	0.00027745	521.7311702483659	71.434	1.8534	71.434	70.675	72.528	0					129	64	3	0	0	0	0.0053304	5	16799	16753;16799;16845;16898;16993		81.613	63.478	1	389530			4651	3879	3140	3160	6442;6443;6444;6445;6446	6443		241			-0.07133273828071651
FPIEAGDMF	9	Oxidation (M)	_FPIEAGDM(Oxidation (M))F_		FPIEAGDM(1)F		FPIEAGDM(71)F	0	0	1		nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7310791015625	2	521.731143	1041.44773	0.19759	0.00010309	0.46225	0.00024117	0.65985	0.00034426	521.731150897245	68.899	1.2458	68.961	68.479	69.724	0.062126					83	46	4	0	0	0	0.0087214	1	15884	15884		71.134	54.047	1	281120			4652	3879	3140	3160	6447	6447		241			-0.07133273828071651
FPIEAGDMF	9	Oxidation (M)	_FPIEAGDM(Oxidation (M))F_		FPIEAGDM(1)F		FPIEAGDM(74)F	0	0	1		nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7312622070312	2	521.731143	1041.44773	0.31615	0.00016494	0.18606	9.7074E-05	0.50221	0.00026202	521.7311976879068	71.237	1.6195	71.296	70.728	72.348	0.058578					124	58	3	0	0	0	0.0076571	4	16617	16573;16617;16672;16723		74.423	56.288	1	378700			4653	3879	3140	3160	6448;6449;6450;6451	6449		241			-0.07133273828071651
FPIENRDVL	9	Unmodified	_FPIENRDVL_					0	0	0		NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant;ENST00000576713.6_1_17:79534551-79539120:-|nuORF;ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4	NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant	NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7984619140625	2	551.798206	1101.58186	0.67669	0.0003734	0.012048	6.6478E-06	0.68874	0.00038005	551.7982934599738	54.739	0.48043	54.739	54.657	55.138	0					22	17	2	0	0	0	0.24273	1	11827	11827		13.615	2.7909	1	109800			4654	4875	3141	3161	6452	6452					0.03513127989003806
FPIENRDVL	9	Unmodified	_FPIENRDVL_					0	0	0		NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant;ENST00000576713.6_1_17:79534551-79539120:-|nuORF;ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4	NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant	NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7982788085938	2	551.798206	1101.58186	0.50484	0.00027857	0.068805	3.7966E-05	0.57364	0.00031653	551.7980047491419	71.335	0.47852	71.335	71.135	71.614	0					34	16	3	0	0	0	0.15282	1	16800	16800		24.021	0	1	386620			4655	4875	3141	3161	6453	6453					0.03513127989003806
FPIFHQKEE	9	Unmodified	_FPIFHQKEE_					0	0	0			REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.839111328125	2	587.798206	1173.58186	0.57267	0.00033662	1.6714	0.00098246	2.2441	0.0013191	587.7991245752112	95.793	0.29244	95.832	95.669	95.961	0.038872					23	12	3	0	0	0	0.24635	1	24121	24121		10.824	1.4408	1	69588	+		4656	7896	3142	3162	6454	6454					0.0020112798899845075
FPIHVQTSL	9	Unmodified	_FPIHVQTSL_					0	0	0		ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7	ENST00000565356.5_1_16:68349816-68386396:+|nuORF	ENST00000565356.5_1_16:68349816-68386396:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2901611328125	2	521.290017	1040.56548	-0.0065768	-3.4284E-06	0.26865	0.00014005	0.26208	0.00013662	521.2900060988022	58.489	1.4487	58.489	58.27	59.719	0					96	53	4	0	0	0	1.1935E-05	3	12897	12867;12897;12943		147.06	82.823	1	1564900			4657	2581	3143	3163	6455;6456;6457	6456					0.04682046822927077
FPIHVQTSL	9	Unmodified	_FPIHVQTSL_					0	0	0		ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7	ENST00000565356.5_1_16:68349816-68386396:+|nuORF	ENST00000565356.5_1_16:68349816-68386396:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2900390625	2	521.290017	1040.56548	0.1476	7.6943E-05	0.14517	7.5676E-05	0.29277	0.00015262	521.2898940933775	58.328	1.1934	58.399	58.184	59.377	0.070477					89	44	5	0	0	0	0.0005281	2	12715	12715;12761		131.27	67.031	1	1697200			4658	2581	3143	3163	6458;6459	6458					0.04682046822927077
FPIIRDQIF	9	Unmodified	_FPIIRDQIF_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.826416015625	2	574.826766	1147.63898	0.51339	0.00029511	0.86113	0.000495	1.3745	0.00079011	574.8271144898515	70.497	0.43387	70.497	70.372	70.806	0					33	15	4	0	0	0	0.005983	1	16564	16564		79.596	16.033	1	568150			4659	1665	3144	3164	6460	6460					0.07106595265372562
FPIIRDQIF	9	Unmodified	_FPIIRDQIF_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8269653320312	2	574.826766	1147.63898	0.54593	0.00031382	0.11287	6.4881E-05	0.6588	0.0003787	574.826780030107	70.444	0.33158	70.505	70.359	70.691	0.060562					27	12	3	0	0	0	0.0068798	1	16388	16388		76.825	40.698	1	354510			4660	1665	3144	3164	6461	6461					0.07106595265372562
FPIKYVNDFF	10	Unmodified	_FPIKYVNDFF_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3316650390625	2	645.331882	1288.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.183	1	77.183	76.683	77.683	0								0	0	0	0.33033	1	18603	18603		13.042	7.3106	1				4661	1498	3145	3165	6462	6462					0.016431581999313494
FPIKYVNDFF	10	Unmodified	_FPIKYVNDFF_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.3311767578125	2	645.331882	1288.64921	0.29106	0.00018783	-0.10073	-6.5007E-05	0.19032	0.00012282	645.3315863098828	77.075	0.21532	77.109	76.963	77.178	0.034485					11	7	2	0	0	0	0.27767	1	18407	18407		22.658	14.748	1	180240			4662	1498	3145	3165	6463	6463					0.016431581999313494
FPILFVEPNL	10	Unmodified	_FPILFVEPNL_					0	0	0		ENSG00000156463|ENST00000359120|SH3RF2;SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	ENSG00000156463|ENST00000359120|SH3RF2	ENSG00000156463|ENST00000359120|SH3RF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.8369750976562	2	594.8368	1187.65905	0.53363	0.00031743	-0.15102	-8.9833E-05	0.38261	0.00022759	594.836560648454	97.959	0.67326	97.959	97.684	98.357	0					84	34	4	0	0	0	0.0094986	3	24919	24879;24919;24945		76.825	54.167	1	741270			4663	3624	3146	3166	6464;6465;6466	6465					0.07272346205331814
FPILFVEPNL	10	Unmodified	_FPILFVEPNL_					0	0	0		ENSG00000156463|ENST00000359120|SH3RF2;SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	ENSG00000156463|ENST00000359120|SH3RF2	ENSG00000156463|ENST00000359120|SH3RF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.8369750976562	2	594.8368	1187.65905	0.44684	0.0002658	-0.014064	-8.366E-06	0.43277	0.00025743	594.8366684485625	97.869	0.57216	97.91	97.697	98.269	0.040848					79	28	4	0	0	0	0.0010484	3	24757	24757;24798;24809		89.401	64.41	1	639560			4664	3624	3146	3166	6467;6468;6469	6467					0.07272346205331814
FPILVVAEWE	10	Unmodified	_FPILVVAEWE_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.8281860351562	2	601.826432	1201.63831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.248	1	19.248	18.748	19.748	0								0	0	0	0.33979	1	1313	1313		0.45834	0.057624	1		+		4665	8760	3147	3167	6470	6470					0.04555755825685992
FPIPEEYTF	9	Unmodified	_FPIPEEYTF_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7745361328125	2	571.773865	1141.53318	0.5984	0.00034215	0.35901	0.00020527	0.9574	0.00054742	571.774005562698	82.115	2.1182	82.115	81.461	83.58	0					119	73	2	0	0	0	0.0046476	3	20139	20139;20218;20302		85.357	48.389	1	1002400			4666	3516	3148	3168	6471;6472;6473	6471					-0.031927853707884424
FPIPEEYTF	9	Unmodified	_FPIPEEYTF_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7747802734375	2	571.773865	1141.53318	0.31539	0.00018033	0.57837	0.0003307	0.89376	0.00051103	571.7740954126627	82.136	1.99	82.158	81.57	83.56	0.021866					114	70	2	0	0	0	0.0046476	4	19959	19959;20008;20055;20149		85.357	53.051	1	941250			4667	3516	3148	3168	6474;6475;6476;6477	6474					-0.031927853707884424
FPIPGEPGF	9	Unmodified	_FPIPGEPGF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7449645996094	2	480.744911	959.475269	0.035233	1.6938E-05	1.3855	0.00066606	1.4207	0.000683	480.7454121256652	77.454	1.3596	77.454	76.975	78.335	0					130	53	3	0	0	0	0.004541	5	18717	18621;18664;18717;18765;18811		89.427	59.202	1	1304500			4668	1695	3149	3169	6478;6479;6480;6481;6482	6480					-0.006090025055186743
FPIPGEPGF	9	Unmodified	_FPIPGEPGF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7449951171875	2	480.744911	959.475269	0.16669	8.0133E-05	1.4349	0.00068981	1.6016	0.00076994	480.7454070864658	77.389	1.4224	77.423	77.087	78.509	0.034485					123	54	4	0	0	0	0.004541	6	18546	18450;18497;18546;18592;18636;18663		89.427	59.202	1	1281300			4669	1695	3149	3169	6483;6484;6485;6486;6487;6488	6485					-0.006090025055186743
FPIPGEPGFPL	11	Unmodified	_FPIPGEPGFPL_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	0.73195	0.00042879	0.31668	0.00018552	1.0486	0.0006143	585.8131011178828	92.066	2.7146	92.066	91.183	93.898	0					234	103	4	0	0	0	0.081693	3	23146	23098;23146;23192		49.933	13.806	1	1198100			4670	1695	3150	3170	6489;6490;6491	6490					0.034074866542141535
FPIPGEPGFPL	11	Unmodified	_FPIPGEPGFPL_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	0.77806	0.0004558	0.21834	0.00012791	0.99641	0.00058371	585.8130547977717	92.028	2.9244	92.064	91.046	93.97	0.03653					223	112	4	0	0	0	0.081693	8	22985	22873;22889;22898;22985;23036;23077;23178;23224		49.933	30.571	1	947070			4671	1695	3150	3170	6492;6493;6494;6495;6496;6497;6498;6499	6495					0.034074866542141535
FPIPGPVLL	9	Unmodified	_FPIPGPVLL_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7970886230469	2	476.796946	951.57934	0.33048	0.00015757	-0.13863	-6.61E-05	0.19185	9.1474E-05	476.7967876865829	93.09	0.50761	93.09	92.851	93.358	0					31	19	2	0	0	0	0.23437	2	23443	23443;23457		14.582	8.2276	1	68362			4672	4074	3151	3171	6500;6501	6500					0.10161324321984466
FPIPGPVLL	9	Unmodified	_FPIPGPVLL_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7972106933594	2	476.796946	951.57934	0.25624	0.00012218	-0.23943	-0.00011416	0.016811	8.0155E-06	476.79681148752263	92.98	0.58083	93.018	92.778	93.359	0.037369					39	24	2	0	0	0	0.23437	2	23239	23239;23260		14.582	8.2276	1	67606			4673	4074	3151	3171	6502;6503	6502					0.10161324321984466
FPIPLINRL	9	Unmodified	_FPIPLINRL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.8396606445312	2	541.839677	1081.6648	0.35406	0.00019185	0.2407	0.00013042	0.59477	0.00032227	541.8397107931553	77.031	0.47509	77.031	76.756	77.231	0					47	16	4	0	0	0	0.011655	2	18549	18549;18599		64.236	24.279	1	681300			4674	13348	3152	3172	6504;6505	6504					0.1272348950765263
FPIPLINRL	9	Unmodified	_FPIPLINRL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.83984375	2	541.839677	1081.6648	0.48986	0.00026542	0.08806	4.7714E-05	0.57792	0.00031314	541.839651804886	76.942	0.55191	76.981	76.716	77.268	0.03923					44	20	3	0	0	0	0.092418	1	18416	18416		34.102	8.7031	1	804820			4675	13348	3152	3172	6506	6506					0.1272348950765263
FPIQGQEKV	9	Unmodified	_FPIQGQEKV_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.771484375	2	523.287474	1044.5604	0.45695	0.00023912	-0.52394	-0.00027417	-0.066986	-3.5053E-05	523.2870989570694	63.133	0.70781	63.133	62.941	63.649	0					34	26	2	0	0	0	0.2491	1	14465	14465		4.756	0.81161	1	225910	+		4676	9500	3153	3173	6507	6507					0.03989742960266085
FPIQYMFLL	9	Unmodified	_FPIQYMFLL_					0	0	0			REV__ENSG00000181903|ENST00000314259|OR4C6	REV__ENSG00000181903|ENST00000314259|OR4C6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3159790039062	2	586.314646	1170.61474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.468	1	94.506	94.006	95.006	0.038086								0	0	0	0.2699	1	23704	23704		5.2307	0	1		+		4677	10545	3154	3174	6508	6508					0.03625618787486928
FPISDDRNSSV	11	Unmodified	_FPISDDRNSSV_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.7952880859375	2	618.796392	1235.57823	-0.71076	-0.00043981	0.68199	0.00042201	-0.028767	-1.7801E-05	618.7964203141462	42.861	0.75913	42.861	42.599	43.358	0					58	25	3	0	0	0	0.38189	3	8173	8149;8173;8228		8.4443	3.5473	1	55226			4678	2900	3155	3175	6509;6510;6511	6510					-0.030135865755482882
FPISDDRNSSV	11	Unmodified	_FPISDDRNSSV_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.2977294921875	2	618.796392	1235.57823	-0.51443	-0.00031833	0.60786	0.00037614	0.093434	5.7817E-05	618.7967560806444	42.78	0.63884	42.869	42.598	43.236	0.089764					36	24	2	0	0	0	0.38984	2	8095	8020;8095		6.6304	2.754	1	59137			4679	2900	3155	3175	6512;6513	6513					-0.030135865755482882
FPISDHVLT	9	Unmodified	_FPISDHVLT_					0	0	0		ENST00000553690.5_1_14:72924992-72931412:+|nuORF;nc|ENSG00000182732|P49758|RGS6;ENSG00000182732|ENST00000553525|RGS6;nc|ENSG00000182901|P49802-5|RGS7;nc|ENSG00000182732|P49758-2|RGS6;nc|ENSG00000182732|P49758-15|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182901|P49802-3|RGS7;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-8|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758-11|RGS6;ENSG00000182901|ENST00000440928|RGS7	ENST00000553690.5_1_14:72924992-72931412:+|nuORF	ENST00000553690.5_1_14:72924992-72931412:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2761840820312	2	514.7742	1027.53385	0.5948	0.00030619	1.2112	0.00062351	1.806	0.0009297	514.7748314470933	97.984	0.79861	98.024	97.632	98.43	0.040855					64	41	2	0	0	0	0.17247	1	24740	24740		21.747	2.3076	1	164540			4680	4888	3156	3176	6514	6514					0.021180540689329064
FPISEETIKL	10	Unmodified	_FPISEETIKL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	ENSG00000107625|ENST00000373585|DDX50;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8295288085938	2	588.829172	1175.64379	0.7499	0.00044156	-0.072078	-4.2442E-05	0.67782	0.00039912	588.8289904505979	65.032	1.8355	65.032	64.719	66.555	0					204	67	5	0	0	0	9.8363E-11	4	14901	14853;14901;14950;14997		159.1	102.92	1	3995600			4681	270;269	3157	3177	6515;6516;6517;6518	6516					0.06299434617471888
FPISEETIKL	10	Unmodified	_FPISEETIKL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	ENSG00000107625|ENST00000373585|DDX50;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8294677734375	2	588.829172	1175.64379	0.68307	0.00040221	0.06429	3.7856E-05	0.74736	0.00044007	588.8290322387593	65.059	2.1046	65.127	64.401	66.506	0.068916					221	80	5	0	0	0	9.8363E-11	5	14719	14675;14719;14762;14810;14854		159.1	119.15	1	3884700			4682	270;269	3157	3177	6519;6520;6521;6522;6523	6520					0.06299434617471888
FPISEETIKLL	11	Unmodified	_FPISEETIKLL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	ENSG00000107625|ENST00000373585|DDX50;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3707275390625	2	645.371204	1288.72785	0.42349	0.00027331	-0.44666	-0.00028826	-0.023164	-1.4949E-05	645.3708833244962	75.061	0.55638	75.061	74.823	75.38	0					37	20	3	0	0	0	0.075607	3	17978	17931;17978;18005		51.415	32.824	1	369230			4683	270;269	3158	3178	6524;6525;6526	6525					0.09503965714384321
FPISEETIKLL	11	Unmodified	_FPISEETIKLL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	ENSG00000107625|ENST00000373585|DDX50;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.3704223632812	2	645.371204	1288.72785	0.26815	0.00017306	-0.015936	-1.0285E-05	0.25222	0.00016277	645.8727475664981	75.084	0.52043	75.128	74.892	75.412	0.044037					32	18	2	0	0	0	0.11131	2	17790	17790;17822		43.982	22.445	1	479750			4684	270;269	3158	3178	6527;6528	6527					0.09503965714384321
FPISREAFQAL	11	Unmodified	_FPISREAFQAL_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.8443603515625	2	639.845687	1277.67682	0.46334	0.00029646	-0.1638	-0.00010481	0.29954	0.00019166	640.3472426807193	65.818	0.63192	65.885	65.597	66.229	0.066872					41	24	2	0	0	0	0.38613	1	15016	15016		7.4771	2.5801	1	398700			4685	3452	3159	3179	6529	6529					0.0490906146017096
FPISREAFQAL	11	Unmodified	_FPISREAFQAL_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	639.845687	1277.67682	0.61529	0.00039369	-0.38956	-0.00024926	0.22573	0.00014443	639.8453285284386	65.79	0.55854	65.79	65.578	66.137	0	-0.047629	-0.00011929	NaN	7.4771	37	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281480			4686	3452	3159	3179							0.0490906146017096
FPITSDATKL	10	Unmodified	_FPITSDATKL_					0	0	0		ENSG00000174776|ENST00000682715|WDR49	ENSG00000174776|ENST00000682715|WDR49	ENSG00000174776|ENST00000682715|WDR49	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2836303710938	2	546.800414	1091.58628	0.41783	0.00022847	0.066	3.6089E-05	0.48383	0.00026456	546.8005262477387	62.462	1.1717	62.462	62.041	63.212	0					108	44	4	0	0	0	0.27354	1	14253	14253		25.399	0.40835	1	2354000			4687	4598	3160	3180	6530	6530					0.04414592411899321
FPKEGTHGKG	10	Unmodified	_FPKEGTHGKG_					0	0	0			REV__nc|ENSG00000288393|Q92670|ZNF75CP	REV__nc|ENSG00000288393|Q92670|ZNF75CP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7848510742188	2	529.274898	1056.53524	0.5679	0.00030057	1.8751	0.00099247	2.443	0.001293	529.2761788015783	92.505	0.17333	92.505	92.405	92.579	0					10	6	2	0	0	0	0.31565	1	23282	23282		12.241	2.1667	1	42715	+		4688	12918	3161	3181	6531	6531					0.009236881577180611
FPKIGAHVR	9	Unmodified	_FPKIGAHVR_					0	0	0			REV__ENSG00000171448|ENST00000373656|ZBTB26	REV__ENSG00000171448|ENST00000373656|ZBTB26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8074951171875	2	512.806168	1023.59778	0.24504	0.00012566	0.38774	0.00019884	0.63278	0.00032449	512.8064988409157	103.13	0.22667	103.13	103.03	103.25	0					21	14	2	0	0	0	0.33704	1	26519	26519		1.8442	0.36234	1	57904	+		4689	10255	3162	3182	6532	6532					0.08692879016552979
FPKIGAHVR	9	Unmodified	_FPKIGAHVR_					0	0	0			REV__ENSG00000171448|ENST00000373656|ZBTB26	REV__ENSG00000171448|ENST00000373656|ZBTB26	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.806396484375	2	512.806168	1023.59778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.67	1	102.71	102.21	103.21	0.040916								0	0	0	0.27613	1	26193	26193		3.9444	1.3669	1		+		4690	10255	3162	3182	6533	6533					0.08692879016552979
FPKIRWLF	8	Unmodified	_FPKIRWLF_					0	0	0			REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8302001953125	2	553.829112	1105.64367	0.60699	0.00033617	1.3264	0.00073459	1.9334	0.0010708	553.8297643868262	81.796	0.79704	81.817	81.449	82.246	0.021866					75	28	4	0	0	0	0.53257	1	19944	19944		6.3541	3.4649	1	239270	+		4691	9762	3163	3183	6534	6534					0.0950752419876153
FPKKRCHL	8	Unmodified	_FPKKRCHL_					0	0	0			REV__ENST00000585568.5_1_19:44513139-44515613:+|nuORF	REV__ENST00000585568.5_1_19:44513139-44515613:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7931518554688	2	514.794746	1027.57494	0.62487	0.00032168	-2.9152	-0.0015007	-2.2904	-0.0011791	514.7930355251033	97.533	0.34449	97.533	97.461	97.806	0					23	15	2	0	0	0	0.52924	1	24827	24827		8.5933	0.68312	1	65505	+		4692	9836	3164	3184	6535	6535					0.06225536627448491
FPKWFICC	8	Unmodified	_FPKWFICC_					0	0	0			REV__ENST00000557151.5_3_14:72054459-72054531:+|nuORF	REV__ENST00000557151.5_3_14:72054459-72054531:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2454223632812	2	522.245709	1042.47687	0.071698	3.7444E-05	0.41448	0.00021646	0.48618	0.00025391	522.245757001777	72.757	1.0591	72.813	72.239	73.298	0.055939					53	36	2	0	0	0	0.53423	1	17130	17130		5.2307	0	1	120860	+		4693	12464	3165	3185	6536	6536					-0.042674080127653724
FPLAPLFAL	9	Unmodified	_FPLAPLFAL_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7971496582031	2	494.796946	987.57934	0.21067	0.00010424	0.21085	0.00010433	0.42152	0.00020857	494.7968666562128	105.37	0.27753	105.37	105.21	105.49	0					55	28	3	0	0	0	0.2796	2	27131	27131;27173		9.3474	0	1	87182			4694	2539	3166	3186	6537;6538	6537					0.08505324321993157
FPLAPLFAL	9	Unmodified	_FPLAPLFAL_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7965393066406	2	494.796946	987.57934	0.43518	0.00021533	-0.35047	-0.00017341	0.084712	4.1915E-05	494.796687489428	105.34	0.27282	105.38	105.25	105.52	0.034004					45	28	2	0	0	0	0.2796	1	26941	26941		9.3474	0	1	84267			4695	2539	3166	3186	6539	6539					0.08505324321993157
FPLAPLLAL	9	Unmodified	_FPLAPLLAL_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000151572|ENST00000392977|ANO4;ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000171714|ENST00000324559|ANO5;ENST00000526142.5_1_11:419653-429752:-|nuORF;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9	nc|ENSG00000177119|Q4KMQ2-3|ANO6;nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000134343|ENST00000256737|ANO3;ENSG00000171714|ENST00000324559|ANO5;ENST00000526142.5_1_11:419653-429752:-|nuORF	ENSG00000134343|ENST00000256737|ANO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.8045349121094	2	477.804771	953.59499	-0.034932	-1.6691E-05	0.22655	0.00010825	0.19162	9.1558E-05	477.80466885463204	103.07	0.43799	103.07	102.9	103.34	0					41	29	2	0	0	0	0.2796	1	26494	26494		9.3474	4.1168	1	89300			4696	2663;6988;4692;3465;4456	3167	3187	6540	6540					0.11633610839021458
FPLAPLLAL	9	Unmodified	_FPLAPLLAL_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000151572|ENST00000392977|ANO4;ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000171714|ENST00000324559|ANO5;ENST00000526142.5_1_11:419653-429752:-|nuORF;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9	nc|ENSG00000177119|Q4KMQ2-3|ANO6;nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000134343|ENST00000256737|ANO3;ENSG00000171714|ENST00000324559|ANO5;ENST00000526142.5_1_11:419653-429752:-|nuORF	ENSG00000134343|ENST00000256737|ANO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.80450439453125	2	477.804771	953.59499	0.12244	5.8503E-05	0.24104	0.00011517	0.36348	0.00017367	477.804731967024	103.05	0.39059	103.09	102.89	103.28	0.040916					54	33	2	0	0	0	0.23437	1	26311	26311		14.582	5.2343	1	93411			4697	2663;6988;4692;3465;4456	3167	3187	6541	6541					0.11633610839021458
FPLDAAIIF	9	Unmodified	_FPLDAAIIF_					0	0	0		ENST00000461035.5_1_1:45478567-45479041:+|nuORF;ENST00000491300.5_1_1:45478567-45479375:+|nuORF;ENST00000460334.5_1_1:45477931-45479375:+|nuORF;ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENST00000496439.1_1_1:45478597-45479553:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000461035.5_1_1:45478567-45479041:+|nuORF	ENST00000461035.5_1_1:45478567-45479041:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7842102050781	2	503.784036	1005.55352	0.51338	0.00025863	0.15055	7.5846E-05	0.66394	0.00033448	503.78392101191946	97.951	1.133	97.992	97.489	98.622	0.040855					134	58	3	0	0	0	0.17491	1	24763	24763		28.487	0	1	582450			4698	2327	3168	3188	6542	6542					0.05096430079720449
FPLDADKILL	10	Unmodified	_FPLDADKILL_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.2863159179688	2	572.834257	1143.65396	0.27384	0.00015687	0.098686	5.6531E-05	0.37253	0.0002134	572.8341242578057	77.608	0.59479	77.608	77.389	77.984	0					33	21	2	0	0	0	0.31144	1	18735	18735		18.373	3.9677	1	147420			4699	914	3169	3189	6543	6543					0.08788042342712288
FPLDADKILL	10	Unmodified	_FPLDADKILL_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.286376953125	2	572.834257	1143.65396	0.42156	0.00024148	-0.27207	-0.00015585	0.14949	8.5634E-05	572.8336915805855	77.626	0.49182	77.66	77.417	77.909	0.034485					25	16	2	0	0	0	0.31515	1	18513	18513		14.405	1.3629	1	151410			4700	914	3169	3189	6544	6544					0.08788042342712288
FPLDFIVQF	9	Unmodified	_FPLDFIVQF_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3027954101562	2	563.302593	1124.59063	-0.037016	-2.0851E-05	0.44369	0.00024993	0.40667	0.00022908	563.3027768136819	106.77	0.33595	106.77	106.75	107.08	0					66	34	3	0	0	0	0.15282	1	27564	27564		24.021	10.115	1	628630			4701	1808	3170	3190	6545	6545					0.03332101625483119
FPLDFIVQF	9	Unmodified	_FPLDFIVQF_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3027954101562	2	563.302593	1124.59063	0.31897	0.00017967	0.11916	6.7125E-05	0.43813	0.0002468	563.3025731628361	106.56	0.94052	106.59	106.23	107.17	0.025711					279	98	4	0	0	0	0.0044607	5	27286	27252;27286;27323;27358;27428		92.491	27.256	1	853790			4702	1808	3170	3190	6546;6547;6548;6549;6550	6547					0.03332101625483119
FPLDKSLLL	9	Unmodified	_FPLDKSLLL_					0	0	0		EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2	EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant	EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3179321289062	2	523.318243	1044.62193	0.18398	9.6279E-05	-0.016844	-8.8148E-06	0.16713	8.7465E-05	523.3180405151924	74.036	1.1392	74.036	73.464	74.604	0					85	41	3	0	0	0	0.026809	4	17590	17540;17590;17644;17700		53.404	13.427	1	252450			4703	902	3171	3191	6551;6552;6553;6554	6552					0.10140674659578508
FPLDKSLLL	9	Unmodified	_FPLDKSLLL_					0	0	0		EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2	EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant	EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3177490234375	2	523.318243	1044.62193	0.28641	0.00014988	-0.31766	-0.00016624	-0.03125	-1.6354E-05	523.3180807238972	73.902	1.1295	73.95	73.437	74.567	0.048546					68	41	3	0	0	0	0.020768	3	17381	17381;17437;17491		57.722	19.748	1	368810			4704	902	3171	3191	6555;6556;6557	6555					0.10140674659578508
FPLDLDVKM	9	Oxidation (M)	_FPLDLDVKM(Oxidation (M))_		FPLDLDVKM(1)		FPLDLDVKM(130)	0	0	1		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2837524414062	2	547.283543	1092.55253	0.48325	0.00026448	-0.40498	-0.00022164	0.078271	4.2837E-05	547.2833620994787	62.924	1.507	62.924	62.255	63.762	0					137	55	3	0	0	0	0.00041987	5	14297	14297;14315;14360;14405;14469		133.05	77.549	1	1890300			4705	1852	3172	3192	6558;6559;6560;6561;6562	6558		109			0.009958476484825951
FPLDLDVKM	9	Oxidation (M)	_FPLDLDVKM(Oxidation (M))_		FPLDLDVKM(1)		FPLDLDVKM(110)	0	0	1		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2837524414062	2	547.283543	1092.55253	0.69166	0.00037853	0.53951	0.00029527	1.2312	0.0006738	547.2837805383089	65.476	1.7587	65.476	64.796	66.555	0					139	64	4	0	0	0	0.0028522	3	14979	14932;14979;15113		110.55	62.207	1	1163500			4706	1852	3172	3192	6563;6564;6565	6564		109			0.009958476484825951
FPLDLDVKM	9	Oxidation (M)	_FPLDLDVKM(Oxidation (M))_		FPLDLDVKM(1)		FPLDLDVKM(90)	0	0	1		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2835693359375	2	547.283543	1092.55253	0.43222	0.00023655	-0.36125	-0.00019771	0.070969	3.884E-05	547.2833827644862	62.899	1.4645	62.972	62.396	63.86	0.072701					143	55	3	0	0	0	0.0045224	5	14144	14144;14157;14203;14252;14281		90.135	56.69	1	1276200			4707	1852	3172	3192	6566;6567;6568;6569;6570	6566		109			0.009958476484825951
FPLDLDVKM	9	Oxidation (M)	_FPLDLDVKM(Oxidation (M))_		FPLDLDVKM(1)		FPLDLDVKM(120)	0	0	1		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2840576171875	2	547.283543	1092.55253	0.52939	0.00028973	0.96968	0.00053069	1.4991	0.00082042	547.2838900063159	65.511	1.9983	65.578	64.606	66.604	0.066872					171	76	4	0	0	0	0.0011184	6	14905	14690;14735;14780;14829;14905;14947		121.53	73.188	1	1388800			4708	1852	3172	3192	6571;6572;6573;6574;6575;6576	6575		109			0.009958476484825951
FPLDLDVKM	9	Unmodified	_FPLDLDVKM_					0	0	0		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2864990234375	2	539.286085	1076.55762	0.082439	4.4458E-05	0.4181	0.00022548	0.50054	0.00026993	539.2861719744413	73.136	1.3373	73.136	72.582	73.92	0					118	47	4	0	0	0	0.0056336	4	17363	17310;17363;17415;17455		80.676	53.453	1	926470			4709	1852	3172	3193	6577;6578;6579;6580	6578					0.022401515111141634
FPLDLDVKM	9	Unmodified	_FPLDLDVKM_					0	0	0		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2863159179688	2	539.286085	1076.55762	0.31483	0.00016978	0.2267	0.00012226	0.54153	0.00029204	539.2861410608301	73.194	1.0829	73.246	72.591	73.673	0.052574					80	39	3	0	0	0	0.0045224	4	17212	17125;17167;17212;17267		90.135	56.69	1	887150			4710	1852	3172	3193	6581;6582;6583;6584	6583					0.022401515111141634
FPLDLDVKM	9	Unmodified	_FPLDLDVKM_					0	0	0		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2857666015625	2	539.286085	1076.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.295	1	73.348	72.848	73.848	0.052574								0	0	0	0.0048869	1	17257	17257		74.2	45.705	1				4711	1852	3172	3193	6585	6585					0.022401515111141634
FPLDLDVKM	9	Unmodified	_FPLDLDVKM_					0	0	0		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2852172851562	2	539.286085	1076.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.516	1	73.568	73.068	74.068	0.052574								0	0	0	0.0061521	1	17325	17325		70.332	36.23	1				4712	1852	3172	3193	6586	6586					0.022401515111141634
FPLEKPIVF	9	Unmodified	_FPLEKPIVF_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3212280273438	2	545.320786	1088.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.076	1	99.119	98.619	99.619	0.042679								0	0	0	0.28409	1	25109	25109		2.3027	0.24298	1		+		4713	7965	3173	3194	6587	6587					0.08624978522175297
FPLHLPLEL	9	Unmodified	_FPLHLPLEL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8186645507812	2	539.81841	1077.62227	0.56563	0.00030534	-0.0092767	-5.0077E-06	0.55635	0.00030033	539.8183279365572	82.578	0.66906	82.578	82.259	82.928	0					48	23	3	0	0	0	0.017037	1	20250	20250		60.39	15.983	1	511750			4714	1671	3174	3195	6588	6588					0.0865609437942112
FPLHLPLEL	9	Unmodified	_FPLHLPLEL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.33056640625	2	539.81841	1077.62227	0.45948	0.00024804	0.046949	2.5344E-05	0.50643	0.00027338	539.8183928847488	82.457	0.80379	82.479	82.297	83.1	0.021744					61	28	3	0	0	0	0.16036	3	20091	20091;20110;20146		23.148	0	1	621170			4715	1671	3174	3195	6589;6590;6591	6589					0.0865609437942112
FPLIFIDFE	9	Unmodified	_FPLIFIDFE_					0	0	0		ENST00000484179.5_1_2:61493011-61508284:-|nuORF	ENST00000484179.5_1_2:61493011-61508284:-|nuORF	ENST00000484179.5_1_2:61493011-61508284:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3364868164062	2	570.802426	1139.5903	0.25009	0.00014275	-1.6141	-0.00092133	-1.364	-0.00077858	571.3038095074834	77.991	0.43735	77.991	77.716	78.153	0					34	14	3	0	0	0	0.20845	1	18830	18830		21.747	10.106	1	165790			4716	6771	3175	3196	6592	6592					0.02608681905621779
FPLLLQEAL	9	Unmodified	_FPLLLQEAL_					0	0	0		nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7946166992188	2	522.310418	1042.60628	0.57511	0.00030039	-0.91178	-0.00047623	-0.33666	-0.00017584	522.3096975544352	92.571	0.4931	92.571	92.379	92.872	0					27	18	2	0	0	0	0.19558	1	23304	23304		20.415	0	1	173740			4717	3034	3176	3197	6593	6593					0.08668388142518779
FPLLLQEAL	9	Unmodified	_FPLLLQEAL_					0	0	0		nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.794677734375	2	522.310418	1042.60628	0.48392	0.00025276	-0.81487	-0.00042562	-0.33095	-0.00017286	522.3096581066542	92.585	0.70667	92.621	92.452	93.159	0.03653					28	13	3	0	0	0	0.19398	1	23098	23098		19.257	0	1	226340			4718	3034	3176	3197	6594	6594					0.08668388142518779
FPLLMERNR	9	Unmodified	_FPLLMERNR_					0	0	0			REV__ENST00000374843.8_1_6:32918343-32920806:-|nuORF	REV__ENST00000374843.8_1_6:32918343-32920806:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.8397216796875	2	588.321325	1174.6281	0.47748	0.00028091	-0.19761	-0.00011626	0.27987	0.00016466	588.3214335171137	96.114	0.2501	96.114	95.936	96.187	0					16	13	2	0	0	0	0.2491	1	24312	24312		8.5933	1.304	1	61962	+		4719	11628	3177	3198	6595	6595					0.04776869619445279
FPLNVAAYLL	10	Unmodified	_FPLNVAAYLL_					0	0	0		nc|ENSG00000188167|Q6ZT21-2|TMPPE;ENSG00000188167|ENST00000342462|TMPPE	nc|ENSG00000188167|Q6ZT21-2|TMPPE	nc|ENSG00000188167|Q6ZT21-2|TMPPE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.79541015625	2	560.823692	1119.63283	0.50698	0.00028433	-3.2996	-0.0018505	-2.7926	-0.0015662	560.82138253699	76.886	0.41338	76.926	76.794	77.207	0.03923					23	14	2	0	0	0	0.31691	1	18424	18424		7.2892	0	1	147070			4720	5144	3178	3199	6596	6596					0.07780077033839916
FPLPAARRP	9	Unmodified	_FPLPAARRP_					0	0	0			REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8065185546875	2	512.806168	1023.59778	0.3683	0.00018887	0.45093	0.00023124	0.81923	0.00042011	512.806327177048	101.48	0.63203	101.48	101.07	101.71	0					93	38	4	0	0	0	0.1182	2	25933	25933;25978		28.487	9.0478	1	965210	+		4721	12331	3179	3200	6597;6598	6597					0.08692879016552979
FPLPAARRP	9	Unmodified	_FPLPAARRP_					0	0	0			REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.806640625	2	512.806168	1023.59778	0.34024	0.00017448	0.46358	0.00023773	0.80383	0.00041221	512.8063665034833	101.72	0.2544	101.72	101.68	101.94	0					54	21	3	0	0	0	0.17247	2	26060	26060;26098		21.747	2.3393	1	420010	+		4722	12331	3179	3200	6599;6600	6599					0.08692879016552979
FPLPAARRP	9	Unmodified	_FPLPAARRP_					0	0	0			REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8065795898438	2	512.806168	1023.59778	0.46743	0.0002397	0.31279	0.0001604	0.78022	0.0004001	512.8062729003142	101.24	0.67169	101.28	100.98	101.66	0.042656					73	41	2	0	0	0	0.17247	3	25762	25762;25801;25839		21.747	4.8044	1	1412200	+		4723	12331	3179	3200	6601;6602;6603	6601					0.08692879016552979
FPLPAARRP	9	Unmodified	_FPLPAARRP_					0	0	0			REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.806640625	2	512.806168	1023.59778	0.45498	0.00023332	0.11475	5.8842E-05	0.56973	0.00029216	512.8061940769619	101.62	0.37247	101.66	101.59	101.96	0.042656					59	32	2	0	0	0	0.17247	2	25877	25877;25913		21.747	2.3393	1	661500	+		4724	12331	3179	3200	6604;6605	6604					0.08692879016552979
FPLPAARRP	9	Unmodified	_FPLPAARRP_					0	0	0			REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8076171875	2	512.806168	1023.59778	0.4465	0.00022897	0.53248	0.00027306	0.97898	0.00050203	512.8065672517408	102.07	0.34967	102.11	101.96	102.31	0.042656					38	28	3	0	0	0	0.21398	1	26022	26022		16.942	0	1	145160	+		4725	12331	3179	3200	6606	6606					0.08692879016552979
FPLPAARRP	9	Unmodified	_FPLPAARRP_					0	0	0			REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.806396484375	2	512.806168	1023.59778	0.43368	0.00022239	0.40102	0.00020565	0.83471	0.00042804	512.8064357540502	102.36	0.33221	102.4	102.31	102.64	0.040909					39	21	2	0	0	0	0.32112	1	26155	26155		3.9444	0	1	96508	+		4726	12331	3179	3200	6607	6607					0.08692879016552979
FPLPAARRP	9	Unmodified	_FPLPAARRP_					0	0	0			REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.806640625	2	512.806168	1023.59778	0.46743	0.0002397	0.31279	0.0001604	0.78022	0.0004001	512.8062729003142	101.24	0.67169	101.28	100.98	101.66	0.042656					73	41	2	0	0	0	0.20845	1	25877	25877		21.747	2.3076	1	1412200	+		4727	12331	3179	3200	6608	6608					0.08692879016552979
FPLPAARRP	9	Unmodified	_FPLPAARRP_					0	0	0			REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.806168	1023.59778	0.34024	0.00017448	0.46358	0.00023773	0.80383	0.00041221	512.8063665034833	101.72	0.2544	101.72	101.68	101.94	0	-0.19292	-1.7792E-05	NaN	21.747	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420010	+		4728	12331	3179	3200							0.08692879016552979
FPLPTASSPFL	11	Unmodified	_FPLPTASSPFL_					0	0	0		ENST00000311481.10_1_11:66043945-66044302:+|nuORF	ENST00000311481.10_1_11:66043945-66044302:+|nuORF	ENST00000311481.10_1_11:66043945-66044302:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.81884765625	2	588.818607	1175.62266	0.60097	0.00035386	-0.1175	-6.9187E-05	0.48347	0.00028468	589.3198129270195	93.939	0.82747	93.939	93.599	94.426	0					88	39	3	0	0	0	0.24779	1	23757	23757		24.021	5.8742	1	1355800			4729	6002	3180	3201	6609	6609					0.0418746930861289
FPLPTASSPFL	11	Unmodified	_FPLPTASSPFL_					0	0	0		ENST00000311481.10_1_11:66043945-66044302:+|nuORF	ENST00000311481.10_1_11:66043945-66044302:+|nuORF	ENST00000311481.10_1_11:66043945-66044302:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8185424804688	2	588.818607	1175.62266	0.62426	0.00036757	-0.25116	-0.00014789	0.3731	0.00021969	588.8185310334376	93.929	1.1855	93.967	93.656	94.841	0.038094					105	52	3	0	0	0	0.19725	3	23504	23504;23587;23634		30.637	7.8715	1	1181900			4730	6002	3180	3201	6610;6611;6612	6610					0.0418746930861289
FPLQFGREVL	10	Unmodified	_FPLQFGREVL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3375244140625	2	603.337498	1204.66044	0.68706	0.00041453	-0.5715	-0.00034481	0.11555	6.9719E-05	603.3370320542958	70.707	0.49617	70.707	70.391	70.888	0					35	17	3	0	0	0	0.28848	2	16596	16596;16658		23.801	14.257	1	154260			4731	1100	3181	3202	6613;6614	6613					0.06629980294087545
FPLQFGREVL	10	Unmodified	_FPLQFGREVL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3365478515625	2	603.337498	1204.66044	0.80673	0.00048673	-1.2457	-0.00075155	-0.43893	-0.00026482	603.3368030122758	70.586	0.43939	70.647	70.425	70.864	0.060562					28	17	2	0	0	0	0.336	1	16447	16447		18.721	7.9217	1	139570			4732	1100	3181	3202	6615	6615					0.06629980294087545
FPLSELVEF	9	Unmodified	_FPLSELVEF_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.784423828125	2	540.784233	1079.55391	0.56488	0.00030548	0.11562	6.2527E-05	0.6805	0.00036801	540.7842171161691	93.507	0.49926	93.507	93.323	93.822	0					35	19	2	0	0	0	0.047633	2	23568	23568;23615		43.858	22.112	1	371260			4733	1714	3182	3203	6616;6617	6616					0.017318050088988457
FPLSELVEF	9	Unmodified	_FPLSELVEF_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.784423828125	2	540.784233	1079.55391	0.58023	0.00031378	0.20659	0.00011172	0.78682	0.0004255	540.7842054488073	93.544	0.577	93.581	93.336	93.913	0.037369					49	22	3	0	0	0	0.031665	2	23392	23392;23438		49.933	28.186	1	549580			4734	1714	3182	3203	6618;6619	6618					0.017318050088988457
FPLSESDVPLF	11	Unmodified	_FPLSESDVPLF_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;DENND4C|p.E323*|1|0.22|ENSG00000137145|chr9:19296165-19296166|-/T|frameshift_variant	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	417.5487976074219	3	417.548295	1249.62306	0.60126	0.00025105	0.45957	0.00019189	1.0608	0.00044295	417.5484334531472	60.728	1.0133	60.728	60.483	61.496	0					108	36	4	0	0	0	0.38407	2	13555	13555;13601		7.9454	1.7536	1	1266200			4735	2832	3183	3204	6620;6621	6620					0.00822844237791287
FPLSESQTL	9	Unmodified	_FPLSESQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2633056640625	2	511.263665	1020.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.561	1	63.561	63.061	64.061	0								0	0	0	0.16903	1	14445	14445		22.736	3.2973	1				4736	1962	3184	3205	6622	6622					0.003340439694284214
FPLSESQTL	9	Unmodified	_FPLSESQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2638244628906	2	511.263665	1020.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.464	1	63.535	63.035	64.035	0.071018								0	0	0	0.18462	1	14274	14274		20.415	2.2796	1				4737	1962	3184	3205	6623	6623					0.003340439694284214
FPLSESQTL	9	Unmodified	_FPLSESQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2641906738281	2	511.263665	1020.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.638	1	63.709	63.209	64.209	0.071018								0	0	0	0.10158	1	14327	14327		32.786	8.7651	1				4738	1962	3184	3205	6624	6624					0.003340439694284214
FPLSESQTLL	10	Unmodified	_FPLSESQTLL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.8057250976562	2	567.805697	1133.59684	0.29387	0.00016686	0.024853	1.4112E-05	0.31872	0.00018097	567.8056413378027	76.333	0.63406	76.333	76.173	76.807	0					41	23	2	0	0	0	0.17573	3	18392	18343;18382;18392		36.506	15.635	1	386440			4739	1962	3185	3206	6625;6626;6627	6627					0.035385750663408544
FPLSESQTLL	10	Unmodified	_FPLSESQTLL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.806396484375	2	567.805697	1133.59684	0.32253	0.00018313	0.18745	0.00010644	0.50998	0.00028957	567.8057438267475	76.29	0.63255	76.329	76.126	76.758	0.03923					43	25	2	0	0	0	0.086538	2	18192	18157;18192		47.594	21.326	1	328030			4740	1962	3185	3206	6628;6629	6629					0.035385750663408544
FPLSFGTDIF	10	Unmodified	_FPLSFGTDIF_					0	0	0			REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2882690429688	2	572.289682	1142.56481	0.17255	9.8751E-05	-2.4993	-0.0014303	-2.3268	-0.0013316	572.2880713110239	103.49	0.37704	103.49	103.29	103.67	0					47	33	2	0	0	0	0.3198	1	26593	26593		20.454	3.011	1	196790	+		4741	8928	3186	3207	6630	6630					-0.0007679261680095806
FPLSFGTDIF	10	Unmodified	_FPLSFGTDIF_					0	0	0			REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8177490234375	2	572.289682	1142.56481	0.51444	0.00029441	0.070842	4.0542E-05	0.58528	0.00033495	572.2897594941421	70.372	1.7135	70.433	70.104	71.817	0.060562					235	65	6	0	0	0	0.3939	1	16360	16360		12.532	1.7076	1	11704000	+		4742	8928	3186	3207	6631	6631					-0.0007679261680095806
FPLSFGTDIF	10	Unmodified	_FPLSFGTDIF_					0	0	0			REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.289682	1142.56481	0.368	0.0002106	-2.7678	-0.001584	-2.3998	-0.0013734	572.2879864683318	103.47	0.20163	103.5	103.39	103.59	0.03791	0.0063469	-0.00019358	NaN	20.454	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305780	+		4743	8928	3186	3207							-0.0007679261680095806
FPLSHFLSL	9	Unmodified	_FPLSHFLSL_					0	0	0		ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.F771L|1|0.05|ENSG00000173692|chr2:231161434-231161434|C/G|missense_variant	ENSG00000173692|ENST00000308696|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.795166015625	2	530.794935	1059.57532	0.28698	0.00015233	-0.079916	-4.2419E-05	0.20707	0.00010991	531.2963983649626	78.416	0.47533	78.416	78.176	78.651	0					25	15	2	0	0	0	0.10067	1	18976	18976		32.305	13.049	1	129800			4744	4554	3187	3208	6632	6632					0.047912348282807216
FPLSITLVL	9	Unmodified	_FPLSITLVL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.81536865234375	2	501.815336	1001.61612	0.32083	0.000161	0.0039401	1.9772E-06	0.32477	0.00016298	501.8153108280365	101.5	0.96711	101.5	100.97	101.94	0					181	63	4	0	0	0	0.0076571	2	25924	25924;25963		74.423	7.0789	1	3400600			4745	2860;4835	3188	3209	6633;6634	6633					0.11537576147884465
FPLSITLVL	9	Unmodified	_FPLSITLVL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8155212402344	2	501.815336	1001.61612	0.44363	0.00022262	-0.15616	-7.8365E-05	0.28747	0.00014426	501.8152966157943	101.24	0.95843	101.28	100.97	101.93	0.042656					165	67	4	0	0	0	0.0065046	3	25825	25750;25789;25825		77.984	0	1	5181700			4746	2860;4835	3188	3209	6635;6636;6637	6637					0.11537576147884465
FPLSITLVL	9	Unmodified	_FPLSITLVL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8154602050781	2	501.815336	1001.61612	0.43567	0.00021862	-0.20184	-0.00010129	0.23383	0.00011734	501.8152192214296	101.6	0.49991	101.65	101.46	101.96	0.042656					54	40	2	0	0	0	0.017037	2	25865	25865;25903		60.39	0	1	3083300			4747	2860;4835	3188	3209	6638;6639	6638					0.11537576147884465
FPLSITLVL	9	Unmodified	_FPLSITLVL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8153991699219	2	501.815336	1001.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.81	1	101.86	101.36	102.36	0.042656								0	0	0	0.097189	1	25937	25937		34.102	0	1				4748	2860;4835	3188	3209	6640	6640					0.11537576147884465
FPLSPDWQV	9	Unmodified	_FPLSPDWQV_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF;ENST00000434365.1_1_X:114938170-114938437:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7744750976562	2	544.7742	1087.53385	0.61766	0.00033648	0.33553	0.00018279	0.95319	0.00051927	544.774241322011	82.193	1.0902	82.193	81.81	82.9	0					109	38	4	0	0	0	0.0074933	1	20210	20210		74.929	44.704	1	869580			4749	5695	3189	3210	6641	6641					-0.00641945931056398
FPLSPDWQV	9	Unmodified	_FPLSPDWQV_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF;ENST00000434365.1_1_X:114938170-114938437:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7745971679688	2	544.7742	1087.53385	0.34427	0.00018755	0.56768	0.00030926	0.91195	0.0004968	544.774328359245	82.18	1.1709	82.201	81.846	83.017	0.021866					96	41	4	0	0	0	0.01063	1	20006	20006		65.235	27.059	1	949200			4750	5695	3189	3210	6642	6642					-0.00641945931056398
FPLSSSSSFF	10	Unmodified	_FPLSSSSSFF_					0	0	0		ENST00000503766.5_1_6:43190665-43190782:+|nuORF	ENST00000503766.5_1_6:43190665-43190782:+|nuORF	ENST00000503766.5_1_6:43190665-43190782:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2637329101562	2	553.263665	1104.51278	0.81455	0.00045066	1.1824	0.00065416	1.9969	0.0011048	553.263732199179	80.866	0.60478	80.889	80.652	81.257	0.023605					37	20	3	0	0	0	0.3939	1	19602	19602		12.532	1.4171	1	127460			4751	6875	3190	3211	6643	6643					-0.03529956030570247
FPLSYVEVL	9	Unmodified	_FPLSYVEVL_					0	0	0		nc|ENSG00000141985|Q99961-3|SH3GL1;nc|ENSG00000141985|Q99961-2|SH3GL1;ENSG00000141985|ENST00000269886|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7953491210938	2	533.794601	1065.57465	0.53518	0.00028568	-1.6358	-0.0008732	-1.1007	-0.00058752	534.2945194306382	88.194	0.57716	88.224	87.936	88.513	0.030045					40	20	3	0	0	0	0.26684	1	21805	21805		10.824	2.0785	1	119980			4752	3083	3191	3212	6644	6644					0.044483953885674055
FPLTTESAM	9	Oxidation (M)	_FPLTTESAM(Oxidation (M))_		FPLTTESAM(1)		FPLTTESAM(68)	0	0	1		ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7362060546875	2	506.736425	1011.4583	0.42614	0.00021594	-0.74118	-0.00037558	-0.31504	-0.00015964	506.7359936940159	55.23	1.4282	55.23	54.635	56.063	0					91	51	2	0	0	0	0.0097093	2	11913	11883;11913		68.081	46.334	1	194860			4753	5355	3192	3213	6645;6646	6646		302			-0.04697291173636131
FPLTTESAM	9	Oxidation (M)	_FPLTTESAM(Oxidation (M))_		FPLTTESAM(1)		FPLTTESAM(100)	0	0	1		ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7364807128906	2	506.736425	1011.4583	0.31932	0.00016181	-0.38803	-0.00019663	-0.068712	-3.4819E-05	506.73623507442045	53.082	0.73948	53.148	52.693	53.432	0.06543					83	33	3	0	0	0	0.0042542	3	11094	11047;11094;11137		100.37	73.488	1	200500			4754	5355	3192	3213	6647;6648;6649	6648		302			-0.04697291173636131
FPLTTESAM	9	Oxidation (M)	_FPLTTESAM(Oxidation (M))_		FPLTTESAM(1)		FPLTTESAM(50)	0	0	1		ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7356872558594	2	506.736425	1011.4583	0.42909	0.00021744	-1.0125	-0.00051305	-0.58336	-0.00029561	506.7358828262732	55.329	1.484	55.394	54.582	56.066	0.065128					97	59	2	0	0	0	0.031665	1	11753	11753		49.933	28.186	1	154390			4755	5355	3192	3213	6650	6650		302			-0.04697291173636131
FPLTVHSLD	9	Unmodified	_FPLTVHSLD_					0	0	0			REV__ENSG00000185532|ENST00000373980|PRKG1	REV__ENSG00000185532|ENST00000373980|PRKG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7747802734375	2	514.7742	1027.53385	0.63793	0.00032839	1.4298	0.00073602	2.0677	0.0010644	514.7749881326694	98.111	0.90288	98.111	97.474	98.377	0					60	44	2	0	0	0	0.25979	1	24923	24923		11.64	0	1	104310	+		4756	10674	3193	3214	6651	6651					0.021180540689329064
FPLYTPLIL	9	Unmodified	_FPLYTPLIL_					0	0	0			REV__ENST00000232496.4_1_3:50362844-50363069:-|nuORF	REV__ENST00000232496.4_1_3:50362844-50363069:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3248901367188	2	538.823161	1075.63177	0.46356	0.00024978	-0.34942	-0.00018828	0.11414	6.1499E-05	538.8228801661361	106.5	0.32665	106.53	106.35	106.68	0.025711					58	35	2	0	0	0	0.22344	1	27298	27298		15.847	7.2539	1	107860	+		4757	11193	3194	3215	6652	6652					0.09697862664961576
FPMVYCIL	8	Unmodified	_FPMVYCIL_					0	0	0		nc|ENSG00000177669|Q96T53-2|MBOAT4;ENSG00000177669|ENST00000320542|MBOAT4	nc|ENSG00000177669|Q96T53-2|MBOAT4	nc|ENSG00000177669|Q96T53-2|MBOAT4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.25616455078125	2	493.247917	984.481282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.787	1	25.787	25.287	26.287	0								0	0	0	0.38822	1	3074	3074		0.79363	0.10326	1				4758	4714	3195	3216	6653	6653					-0.011579435898624979
FPNADSKAL	9	Unmodified	_FPNADSKAL_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7507629394531	2	481.750724	961.486896	-0.31683	-0.00015263	0.47719	0.00022989	0.16036	7.7252E-05	481.75083503079946	39.748	1.1017	39.748	39.379	40.481	0					92	39	4	0	0	0	0.078774	3	7209	7155;7209;7260		37.075	10.807	1	135650			4759	1151	3196	3217	6654;6655;6656	6655					0.0046119451779986775
FPNADSKAL	9	Unmodified	_FPNADSKAL_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7505798339844	2	481.750724	961.486896	-0.20491	-9.8714E-05	0.226	0.00010887	0.021089	1.016E-05	481.7507551915259	39.674	1.0156	39.762	39.392	40.408	0.088562					74	39	4	0	0	0	0.054729	3	7073	7022;7073;7118		42.312	16.044	1	117130			4760	1151	3196	3217	6657;6658;6659	6658					0.0046119451779986775
FPNAIEHTL	9	Unmodified	_FPNAIEHTL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF	nc|ENSG00000130985|P22314-2|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2719116210938	2	521.271824	1040.5291	0.18794	9.797E-05	-0.39568	-0.00020626	-0.20773	-0.00010829	521.2718056422283	52.268	1.7199	52.268	51.713	53.433	0					157	63	4	0	0	0	7.3095E-13	4	10958	10915;10958;11000;11046		185.05	135.12	1	2746600			4761	2506;6807	3197	3218	6660;6661;6662;6663	6661					0.010451699261921021
FPNAIEHTL	9	Unmodified	_FPNAIEHTL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF	nc|ENSG00000130985|P22314-2|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2718505859375	2	521.271824	1040.5291	0.22043	0.00011491	-0.43086	-0.0002246	-0.21043	-0.00010969	521.2717350671462	52.195	1.5946	52.262	51.735	53.33	0.067173					176	64	5	0	0	0	5.8571E-07	4	10804	10763;10804;10844;10883		157.8	112.1	1	2271500			4762	2506;6807	3197	3218	6664;6665;6666;6667	6665					0.010451699261921021
FPNATDYWTF	10	Unmodified	_FPNATDYWTF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.2791748046875	2	631.279846	1260.54514	0.0080945	5.1099E-06	-1.0005	-0.00063161	-0.99243	-0.0006265	631.279123434901	86.451	0.63163	86.451	86.079	86.71	0					44	23	3	0	0	0	0.35616	2	21452	21391;21452		16.566	4.3252	1	156320			4763	5216	3198	3219	6668;6669	6669					-0.0747116862760322
FPNATDYWTF	10	Unmodified	_FPNATDYWTF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.2796020507812	2	631.279846	1260.54514	0.3051	0.00019261	-1.0725	-0.00067702	-0.76735	-0.00048441	631.2791724962194	86.504	0.48618	86.531	86.167	86.653	0.02758					39	18	3	0	0	0	0.39723	2	21243	21243;21254		12.175	4.8855	1	179310			4764	5216	3198	3219	6670;6671	6670					-0.0747116862760322
FPNATSPEL	9	Unmodified	_FPNATSPEL_					0	0	0		nc|ENSG00000106948|Q7Z591-6|AKNA;nc|ENSG00000106948|Q7Z591-3|AKNA;ENSG00000106948|ENST00000374088|AKNA	nc|ENSG00000106948|Q7Z591-6|AKNA	nc|ENSG00000106948|Q7Z591-6|AKNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2431945800781	2	488.242732	974.470912	0.062466	3.0499E-05	1.8514	0.00090392	1.9138	0.00093442	488.2434174873325	89.392	0.37129	89.392	89.219	89.59	0					24	13	3	0	0	0	0.23216	1	22305	22305		14.838	0.25658	1	99192			4765	7480	3199	3220	6672	6672					-0.017345117191098325
FPNEVSVVL	9	Unmodified	_FPNEVSVVL_					0	0	0		HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.276611328125	2	502.276575	1002.5386	0.41758	0.00020974	0.37649	0.0001891	0.79406	0.00039884	502.2766309598898	75.21	0.54297	75.21	74.961	75.504	0					31	20	2	0	0	0	0.20358	1	18041	18041		18.146	5.6148	1	441490			4766	3148	3200	3221	6673	6673					0.03742938211712499
FPNIIDVSI	9	Unmodified	_FPNIIDVSI_					0	0	0		JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;ENSG00000096968|ENST00000381652|JAK2	JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.78607177734375	2	509.2844	1016.55425	0.34773	0.00017709	0.19874	0.00010121	0.54646	0.00027831	509.2846171310484	88.472	0.48029	88.502	88.196	88.677	0.030037					50	19	3	0	0	0	0.10543	1	21821	21821		31.268	9.5217	1	340390			4767	1114	3201	3222	6674	6674					0.04663224728756177
FPNIIDVSI	9	Unmodified	_FPNIIDVSI_					0	0	0		JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;ENSG00000096968|ENST00000381652|JAK2	JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	509.2844	1016.55425	0.38765	0.00019742	0.2336	0.00011897	0.62124	0.00031639	509.28461475694974	88.45	0.49812	88.45	88.181	88.679	0	-0.025719	1.3814E-05	NaN	31.268	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591120			4768	1114	3201	3222							0.04663224728756177
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.77935791015625	2	486.779285	971.544017	-0.0067105	-3.2665E-06	0.14361	6.9906E-05	0.1369	6.664E-05	486.77923557403267	52.416	0.73623	52.416	52.104	52.841	0					49	25	3	0	0	0	0.09598	1	11041	11041		47.594	20.711	1	226520			4769	3180	3202	3223	6675	6675					0.057106617941940385
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7799072265625	2	486.779285	971.544017	0.097968	4.7689E-05	0.24825	0.00012085	0.34622	0.00016853	486.7793282867041	52.412	0.73571	52.479	52.175	52.911	0.067169					57	29	3	0	0	0	0.24767	1	10849	10849		13.042	2.9685	1	191400			4770	3180	3202	3223	6676	6676					0.057106617941940385
FPNIVIKGSEL	11	Unmodified	_FPNIVIKGSEL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.8505859375	2	608.850438	1215.68632	0.67161	0.00040891	-0.47121	-0.0002869	0.2004	0.00012201	608.8501342047148	65.281	0.95996	65.35	65.013	65.973	0.068909					107	37	4	0	0	0	1.1489E-21	2	14828	14781;14828		210.93	103.84	1	1699300			4771	4573	3203	3224	6677;6678	6678					0.08710829745700721
FPNIVIKGSEL	11	Unmodified	_FPNIVIKGSEL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	608.850438	1215.68632	0.75143	0.00045751	-0.65399	-0.00039818	0.097443	5.9328E-05	608.8500695479952	65.303	1.1946	65.303	65.001	66.196	0	-0.023632	-7.3004E-05	NaN	210.93	111	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2061200			4772	4573	3203	3224							0.08710829745700721
FPNKQGYVL	9	Unmodified	_FPNKQGYVL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2901000976562	2	533.290017	1064.56548	0.39202	0.00020906	-0.27561	-0.00014698	0.11641	6.208E-05	533.2897810539505	47.699	2.0783	47.699	46.839	48.917	0					235	71	4	0	0	0	0.0012363	5	9633	9444;9492;9545;9588;9633		120.45	80.493	1	1856500			4773	3560	3204	3225	6679;6680;6681;6682;6683	6683					0.03578046822894976
FPNKQGYVL	9	Unmodified	_FPNKQGYVL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2901000976562	2	533.290017	1064.56548	0.63717	0.0003398	-0.427	-0.00022771	0.21017	0.00011208	533.2897293105411	47.541	2.0634	47.624	46.815	48.879	0.083015					259	76	4	0	0	0	0.0032694	7	9405	9280;9321;9368;9405;9448;9491;9692		108	78.915	1	1503300			4774	3560	3204	3225	6684;6685;6686;6687;6688;6689;6690	6687					0.03578046822894976
FPNLEVEFF	9	Unmodified	_FPNLEVEFF_					0	0	0		tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2820434570312	2	571.281857	1140.54916	0.17097	9.7672E-05	0.27662	0.00015803	0.44759	0.0002557	571.2818891901612	103.39	0.33271	103.39	103.23	103.56	0					47	27	2	0	0	0	0.27332	2	26567	26567;26618		10.074	10.074	1	112240			4775	13647	3205	3226	6691;6692	6691					-0.015490791338379495
FPNLEVEFF	9	Unmodified	_FPNLEVEFF_					0	0	0		tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2821655273438	2	571.281857	1140.54916	0.36622	0.00020921	0.075611	4.3195E-05	0.44183	0.00025241	571.2817892221759	103.38	0.21169	103.42	103.26	103.47	0.03791					39	22	2	0	0	0	0.27332	1	26412	26412		10.074	10.074	1	142840			4776	13647	3205	3226	6693	6693					-0.015490791338379495
FPNNVATVL	9	Unmodified	_FPNNVATVL_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7692565917969	2	487.768917	973.523281	0.26264	0.00012811	0.1018	4.9652E-05	0.36444	0.00017776	487.7688511001194	68.286	0.5766	68.349	68.192	68.768	0.063507					38	21	2	0	0	0	0.083124	1	15730	15730		36.127	7.0454	1	243640			4777	3288	3206	3227	6694	6694					0.035460714145074235
FPNQGEVKL	9	Unmodified	_FPNQGEVKL_					0	0	0		ENSG00000013392|ENST00000369724|RWDD2A	ENSG00000013392|ENST00000369724|RWDD2A	ENSG00000013392|ENST00000369724|RWDD2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.28076171875	2	516.279649	1030.54475	0.46937	0.00024232	-0.064956	-3.3535E-05	0.40441	0.00020879	516.2796497263824	47.388	0.79471	47.388	47.116	47.911	0					42	26	2	0	0	0	0.28919	1	9610	9610		8.1555	1.4324	1	55564			4778	447	3207	3228	6695	6695					0.030694564432451443
FPNREDYIHL	10	Unmodified	_FPNREDYIHL_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.2187805175781	3	435.219172	1302.63569	0.31972	0.00013915	-1.2699	-0.00055267	-0.95015	-0.00041352	435.21887067407596	51.798	0.74643	51.798	51.358	52.104	0					50	25	3	0	0	0	0.45904	1	10881	10881		3.0723	0.33707	1	65568			4779	4632	3208	3229	6696	6696					-0.0035269957929813245
FPNRWEYYL	9	Unmodified	_FPNRWEYYL_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3118286132812	2	644.31148	1286.60841	0.4649	0.00029954	-0.024363	-1.5697E-05	0.44053	0.00028384	644.3113715291091	69.414	0.46281	69.414	69.269	69.732	0					31	15	3	0	0	0	0.13341	1	16230	16230		26.268	14.027	1	238420			4780	39	3209	3230	6697	6697					-0.023431831196603525
FPNSDLLAPL	10	Unmodified	_FPNSDLLAPL_					0	0	0			REV__ENSG00000105538|ENST00000222145|RASIP1	REV__ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.797119140625	2	543.795132	1085.57571	0.51252	0.00027871	1.375	0.00074774	1.8876	0.0010264	543.795993446264	100.95	0.22598	101	100.88	101.1	0.042839					19	14	2	0	0	0	0.45945	1	25691	25691		2.9952	0.26005	1	44924	+		4781	8545	3210	3231	6698	6698					0.036346097574551095
FPNVEIVTI	9	Unmodified	_FPNVEIVTI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7889404296875	2	516.292225	1030.5699	0.23069	0.0001191	-4.4718	-0.0023088	-4.2411	-0.0021897	516.7890211128837	50.822	1.015	50.822	50.46	51.475	0					96	34	4	0	0	0	0.22344	1	10613	10613		15.847	0.5987	1	555190			4782	4919	3211	3232	6699	6699					0.05583511245822592
FPNVEIVTI	9	Unmodified	_FPNVEIVTI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.292236328125	2	516.292225	1030.5699	0.48253	0.00024913	0.078874	4.0722E-05	0.5614	0.00028985	516.2920840467319	82.867	0.71564	82.867	82.563	83.279	0					58	24	3	0	0	0	0.015341	2	20372	20314;20372		61.602	49.554	1	469730			4783	4919	3211	3232	6700;6701	6701					0.05583511245822592
FPNVEIVTI	9	Unmodified	_FPNVEIVTI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2911987304688	2	516.292225	1030.5699	0.32977	0.00017026	0.31052	0.00016032	0.6403	0.00033058	516.2921513963921	82.844	0.63565	82.866	82.589	83.225	0.021744					47	21	3	0	0	0	0.2359	1	20261	20261		14.405	14.405	1	513400			4784	4919	3211	3232	6702	6702					0.05583511245822592
FPNVEIVTI	9	Unmodified	_FPNVEIVTI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	516.292225	1030.5699	0.32977	0.00017026	0.31052	0.00016032	0.6403	0.00033058	516.2921513963921	82.844	0.63565	82.866	82.589	83.225	0.021744	-0.0005295	0.00014184	NaN	61.602	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513400			4785	4919	3211	3232							0.05583511245822592
FPPLYEDIM	9	Oxidation (M)	_FPPLYEDIM(Oxidation (M))_		FPPLYEDIM(1)		FPPLYEDIM(67)	0	0	1		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7678833007812	2	570.767726	1139.5209	0.28629	0.00016341	-0.32889	-0.00018772	-0.042597	-2.4313E-05	570.7674134114583	77.114	0.63959	77.114	76.615	77.254	0					46	22	3	0	0	0	0.0099477	1	18539	18539		67.344	52.095	1	217090			4786	1591	3212	3233	6703	6703		93			-0.043281451054554054
FPPLYEDIM	9	Oxidation (M)	_FPPLYEDIM(Oxidation (M))_		FPPLYEDIM(1)		FPPLYEDIM(67)	0	0	1		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7674560546875	2	570.767726	1139.5209	0.37327	0.00021305	-0.42511	-0.00024264	-0.051843	-2.959E-05	570.767464127546	77.19	0.62174	77.224	76.665	77.287	0.034485					45	24	3	0	0	0	0.0099477	2	18442	18370;18442		67.344	51.195	1	454870			4787	1591	3212	3233	6704;6705	6705		93			-0.043281451054554054
FPPLYEDIM	9	Unmodified	_FPPLYEDIM_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7719116210938	2	562.770268	1123.52598	0.39511	0.00022236	3.7236	0.0020955	4.1187	0.0023179	562.7718598839834	85.723	0.52029	85.723	85.605	86.125	0					43	21	3	0	0	0	0.18364	1	21263	21263		20.454	7.4112	1	195450			4788	1591	3212	3234	6706	6706					-0.030838412428465745
FPPLYEDIM	9	Unmodified	_FPPLYEDIM_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7726440429688	2	562.770268	1123.52598	0.56962	0.00032056	2.5707	0.0014467	3.1403	0.0017673	562.7719919201819	85.808	0.56668	85.833	85.572	86.138	0.025169					36	20	2	0	0	0	0.092418	1	21076	21076		34.102	11.366	1	188140			4789	1591	3212	3234	6707	6707					-0.030838412428465745
FPPPEEFVF	9	Unmodified	_FPPPEEFVF_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.771240234375	2	554.771126	1107.5277	0.30331	0.00016827	0.25155	0.00013955	0.55486	0.00030782	554.7711571246801	86.393	0.92548	86.393	85.931	86.857	0					69	35	2	0	0	0	0.17247	3	21394	21394;21442;21500		21.747	10.106	1	606750			4790	5572	3213	3235	6708;6709;6710	6708					-0.021764641625850345
FPPPIDCLL	9	Unmodified	_FPPPIDCLL_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.749755859375	2	507.770071	1013.52559	-0.31234	-0.0001586	3.7693	0.0019139	3.457	0.0017554	507.77191238857256	42.251	0.35912	42.341	42.161	42.52	0.089764					20	12	2	0	0	0	0.24263	1	7829	7829		12.532	1.7076	1	36886	+		4791	9497	3214	3236	6711	6711					0.019367838279663374
FPPRGPRPV	9	Unmodified	_FPPRGPRPV_					0	0	0		nc|ENSG00000135446|P11802-2|CDK4;ENSG00000135446|ENST00000257904|CDK4	nc|ENSG00000135446|P11802-2|CDK4	nc|ENSG00000135446|P11802-2|CDK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.79833984375	2	511.798343	1021.58213	-0.033297	-1.7041E-05	0.50975	0.00026089	0.47646	0.00024385	511.7985565130351	106.82	0.39793	106.82	106.66	107.06	0					91	40	3	0	0	0	0.25979	1	27556	27556		11.64	11.64	1	387670			4792	2731	3215	3237	6712	6712					0.07220592499515988
FPPSDEQL	8	Unmodified	_FPPSDEQL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2236328125	2	466.721633	931.428712	0.18859	8.8021E-05	0.13062	6.0961E-05	0.31921	0.00014898	466.7214719279428	56.66	1.1879	56.66	56.19	57.378	0					60	43	2	0	0	0	0.4772	1	12236	12236		15.847	4.2069	1	97473			4793	7593	3216	3238	6713	6713					-0.03974487127482007
FPPSDEQL	8	Unmodified	_FPPSDEQL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.10137939453125	2	466.721633	931.428712	0.41362	0.00019305	-0.3153	-0.00014716	0.098327	4.5891E-05	466.721272286114	55.941	1.5112	55.941	54.706	56.217	0					89	54	2	0	0	0	0.35759	1	11929	11929		11.64	0	1	105850			4794	7593	3216	3238	6714	6714					-0.03974487127482007
FPPSDEQL	8	Unmodified	_FPPSDEQL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.7216796875	2	466.721633	931.428712	0.097674	4.5587E-05	0.12715	5.9345E-05	0.22483	0.00010493	466.72159920499934	56.107	0.99097	56.174	55.315	56.306	0.066452					56	37	2	0	0	0	0.4433	2	12016	11947;12016		20.454	20.454	1	130080			4795	7593	3216	3238	6715;6716	6716					-0.03974487127482007
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(120)L	0	0	1		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7948608398438	2	584.794609	1167.57467	0.67934	0.00039727	-0.25583	-0.00014961	0.4235	0.00024766	584.7943151733481	63.556	2.7469	63.556	62.365	65.112	0					205	100	3	0	0	0	0.0011184	7	14461	14223;14273;14368;14416;14461;14503;14553		121.53	77.127	1	1069700			4796	89	3217	3239	6717;6718;6719;6720;6721;6722;6723	6721		3			-0.002419278830757321
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(81)L	0	0	1		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.794921875	2	584.794609	1167.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.784	1	62.857	62.357	63.357	0.072701								0	0	0	0.0027682	1	14067	14067		80.676	47.89	1				4797	89	3217	3239	6724	6724		3			-0.002419278830757321
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(63)L	0	0	1		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7945556640625	2	584.794609	1167.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.936	1	63.008	62.508	63.508	0.072701								0	0	0	0.019321	1	14112	14112		63.227	23.278	1				4798	89	3217	3239	6725	6725		3			-0.002419278830757321
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(63)L	0	0	1		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.79443359375	2	584.794609	1167.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.238	1	63.311	62.811	63.811	0.072701								0	0	0	0.019321	1	14205	14205		63.227	34.741	1				4799	89	3217	3239	6726	6726		3			-0.002419278830757321
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(81)L	0	0	1		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.794677734375	2	584.794609	1167.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.395	1	63.466	62.966	63.966	0.071018								0	0	0	0.0027682	1	14253	14253		80.676	32.927	1				4800	89	3217	3239	6727	6727		3			-0.002419278830757321
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(90)L	0	0	1		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7947998046875	2	584.794609	1167.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.538	1	63.609	63.109	64.109	0.071018								0	0	0	7.1758E-05	1	14297	14297		90.135	38.505	1				4801	89	3217	3239	6728	6728		3			-0.002419278830757321
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(72)L	0	0	1		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7949829101562	2	584.794609	1167.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.672	1	63.743	63.243	64.243	0.071018								0	0	0	0.005702	1	14338	14338		71.708	31.758	1				4802	89	3217	3239	6729	6729		3			-0.002419278830757321
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(57)L	0	0	1		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7950439453125	2	584.794609	1167.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.833	1	63.904	63.404	64.404	0.071018								0	0	0	0.030558	1	14385	14385		57.249	30.981	1				4803	89	3217	3239	6730	6730		3			-0.002419278830757321
FPQEELPVKL	10	Unmodified	_FPQEELPVKL_					0	0	0		ENST00000496105.1_1_3:113169108-113212968:-|nuORF;ENSG00000163611|ENST00000295872|SPICE1	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3367309570312	2	600.337164	1198.65977	0.51833	0.00031118	0.56541	0.00033944	1.0837	0.00065061	600.3369361073773	65.446	0.36746	65.513	65.316	65.684	0.066872					20	14	2	0	0	0	0.43771	1	14902	14902		7.1017	1.3699	1	111010			4804	3924	3218	3240	6731	6731					0.0683914085439028
FPQEFIICF	9	Unmodified	_FPQEFIICF_					0	0	0		ENSG00000081870|ENST00000194214|IFT25	ENSG00000081870|ENST00000194214|IFT25	ENSG00000081870|ENST00000194214|IFT25	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.281005859375	2	572.280803	1142.54705	0.46012	0.00026332	-0.082289	-4.7092E-05	0.37783	0.00021623	572.2806502926572	99.428	0.31116	99.428	99.205	99.516	0					29	18	2	0	0	0	0.2094	1	25348	25348		22.736	7.898	1	317920			4805	912	3219	3241	6732	6732					-0.018518311433126655
FPQEFIICF	9	Unmodified	_FPQEFIICF_					0	0	0		ENSG00000081870|ENST00000194214|IFT25	ENSG00000081870|ENST00000194214|IFT25	ENSG00000081870|ENST00000194214|IFT25	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.4370727539062	2	572.280803	1142.54705	0.49684	0.00028433	0.080288	4.5947E-05	0.57713	0.00033028	572.2806881125385	99.497	0.39468	99.539	99.225	99.62	0.042839					60	25	3	0	0	0	0.2229	1	25159	25159		19.257	4.4187	1	431650			4806	912	3219	3241	6733	6733					-0.018518311433126655
FPQEVKDLL	9	Unmodified	_FPQEVKDLL_					0	0	0		ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENSG00000198301|ENST00000356260|SDAD1	ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENST00000395710.5_1_4:76871905-76902632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8029174804688	2	544.802957	1087.59136	0.50653	0.00027596	-0.11302	-6.1572E-05	0.39352	0.00021439	544.8028358920018	63.581	0.90724	63.581	63.291	64.198	0					59	31	2	0	0	0	0.0039507	4	14418	14418;14460;14504;14578		103.82	96.936	1	1542100			4807	5360	3220	3242	6734;6735;6736;6737	6734					0.05106896274514838
FPQEVKDLL	9	Unmodified	_FPQEVKDLL_					0	0	0		ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENSG00000198301|ENST00000356260|SDAD1	ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENST00000395710.5_1_4:76871905-76902632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.80322265625	2	544.802957	1087.59136	0.44582	0.00024288	0.1934	0.00010537	0.63922	0.00034825	544.802912624427	63.453	0.85452	63.524	63.289	64.143	0.071018					77	30	4	0	0	0	0.00090591	4	14280	14236;14280;14333;14389		125.04	69.535	1	1560500			4808	5360	3220	3242	6738;6739;6740;6741	6739					0.05106896274514838
FPQIGELIL	9	Unmodified	_FPQIGELIL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3029174804688	2	515.302593	1028.59063	0.5784	0.00029805	0.070436	3.6296E-05	0.64883	0.00033434	515.3025740569514	93.537	0.62987	93.537	93.298	93.928	0					44	25	2	0	0	0	0.017478	2	23581	23581;23622		60.074	22.1	1	2088600			4809	3910	3221	3243	6742;6743	6742					0.07748101625475101
FPQIGELIL	9	Unmodified	_FPQIGELIL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3029174804688	2	515.302593	1028.59063	0.49326	0.00025418	0.23439	0.00012078	0.72764	0.00037496	515.3026446448071	93.552	0.68242	93.589	93.288	93.971	0.037369					58	28	3	0	0	0	0.017478	3	23413	23413;23456;23465		60.074	14.053	1	3211900			4810	3910	3221	3243	6744;6745;6746	6744					0.07748101625475101
FPQKFIDLL	9	Unmodified	_FPQKFIDLL_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8236694335938	2	560.823692	1119.63283	0.42178	0.00023655	0.0010037	5.6292E-07	0.42279	0.00023711	560.8235244725438	75.944	1.295	75.944	75.713	77.008	0					179	66	4	0	0	0	3.513E-06	4	18260	18181;18220;18260;18306		155.03	89.84	1	12269000			4811	3641	3222	3244	6747;6748;6749;6750	6749					0.07780077033862653
FPQKFIDLL	9	Unmodified	_FPQKFIDLL_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8239135742188	2	560.823692	1119.63283	0.47245	0.00026496	-0.044183	-2.4779E-05	0.42826	0.00024018	560.823508886073	75.9	1.1261	75.944	75.704	76.83	0.044037					169	60	4	0	0	0	1.0594E-10	5	18043	18009;18043;18081;18120;18168		176.84	98.109	1	9314100			4812	3641	3222	3244	6751;6752;6753;6754;6755	6752					0.07780077033862653
FPQKMYQF	8	Unmodified	_FPQKMYQF_					0	0	0		ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7603149414062	2	544.76532	1087.51609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.216	1	90.25	89.75	90.75	0.034065								0	0	0	0.3773	1	22412	22412		32.117	3.6301	1				4813	3415	3223	3245	6756	6756					-0.02416984457545368
FPQKTQDLT	9	Unmodified	_FPQKTQDLT_					0	0	0		nc|nan|Q8N6V4-4|C10orf53;nc|nan|Q8N6V4-3|C10orf53	nc|nan|Q8N6V4-4|C10orf53	nc|nan|Q8N6V4-4|C10orf53	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.300537109375	2	539.282389	1076.55022	0.075686	4.0816E-05	-0.922	-0.00049722	-0.84632	-0.0004564	539.2817653228292	46.155	0.16823	46.155	46.098	46.267	0					7	5	2	0	0	0	0.2446	1	9150	9150		11.64	0	1	20885			4814	7643	3224	3246	6757	6757					0.01501135235048423
FPQKWPDLL	9	Unmodified	_FPQKWPDLL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3135986328125	2	572.313492	1142.61243	0.336	0.0001923	0.070012	4.0069E-05	0.40601	0.00023237	572.3134524108743	71.43	0.84631	71.43	70.964	71.811	0					100	28	4	0	0	0	0.00061878	5	16826	16781;16826;16876;16922;16937		129.77	89.823	1	2103100			4815	2246	3225	3247	6758;6759;6760;6761;6762	6759					0.04682906374023332
FPQKWPDLL	9	Unmodified	_FPQKWPDLL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.326416015625	2	572.313492	1142.61243	-0.011984	-6.8586E-06	0.40374	0.00023106	0.39175	0.0002242	572.3137446940423	71.978	1.1067	71.978	71.92	73.027	0					51	38	2	0	0	0	0.26684	1	17176	17176		10.824	2.2306	1	151270			4816	2246	3225	3247	6763	6763					0.04682906374023332
FPQKWPDLL	9	Unmodified	_FPQKWPDLL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3135375976562	2	572.313492	1142.61243	0.36398	0.00020831	-0.037506	-2.1465E-05	0.32647	0.00018684	572.3134088006562	71.303	0.92334	71.362	70.892	71.815	0.058578					118	33	5	0	0	0	0.0016252	5	16640	16591;16640;16685;16728;16760		118.07	76.229	1	1900000			4817	2246	3225	3247	6764;6765;6766;6767;6768	6765					0.04682906374023332
FPQPEKESF	9	Unmodified	_FPQPEKESF_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1;ESPL1|p.G1685V|1|0.77|ENSG00000135476|chr12:53289535-53289535|G/T|missense_variant;ENST00000549154.1_1_12:53682884-53683443:+|nuORF	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7852783203125	2	554.769114	1107.52368	0.29336	0.00016275	-0.10389	-5.7634E-05	0.18947	0.00010511	554.7691225578454	45.635	0.53245	45.721	45.447	45.98	0.085621					48	20	3	0	0	0	0.064247	1	8895	8895		40.239	15.565	1	102120			4818	2734	3226	3248	6769	6769					-0.025785536562807465
FPQQRLDQ	8	Unmodified	_FPQQRLDQ_					0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7894287109375	2	516.267073	1030.51959	0.23949	0.00012364	1.2339	0.00063705	1.4734	0.00076068	516.2674871561642	50.654	0.39664	50.654	50.46	50.856	0					21	13	2	0	0	0	0.3528	1	10519	10519		18.135	2.2878	1	132170			4819	893	3227	3249	6770	6770					0.005554016406676965
FPQYAPPVMA	10	Unmodified	_FPQYAPPVMA_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7908325195312	2	560.778428	1119.5423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.189	1	34.266	33.766	34.766	0.076244								0	0	0	0.33156	1	5424	5424		10.074	0.6908	1				4820	7460	3228	3250	6771	6771					-0.012687152860735296
FPQYFEATF	9	Unmodified	_FPQYFEATF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.2664794921875	2	575.266207	1148.51786	0.27737	0.00015956	0.19998	0.00011504	0.47735	0.0002746	575.2662864070779	77.874	1.1227	77.874	77.389	78.512	0					58	39	2	0	0	0	0.12214	1	18832	18832		27.629	12.791	1	206390	+		4821	12719	3229	3251	6772	6772					-0.05045652167973458
FPQYFEATF	9	Unmodified	_FPQYFEATF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7926635742188	2	575.266207	1148.51786	0.27737	0.00015956	0.19998	0.00011504	0.47735	0.0002746	575.2662864070779	77.874	1.1227	77.874	77.389	78.512	0					58	39	2	0	0	0	0.1789	1	18826	18826		29.082	2.1979	1	206390	+		4822	12719	3229	3251	6773	6773					-0.05045652167973458
FPQYFEATF	9	Unmodified	_FPQYFEATF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.2656860351562	2	575.266207	1148.51786	0.44401	0.00025542	0.30755	0.00017692	0.75155	0.00043234	575.2661801330028	77.639	1.2381	77.674	77.417	78.655	0.034485					61	42	2	0	0	0	0.15282	2	18625	18625;18686		24.021	5.8856	1	203570	+		4823	12719	3229	3251	6774;6775	6774					-0.05045652167973458
FPQYPDKEL	9	Unmodified	_FPQYPDKEL_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7847900390625	2	568.784764	1135.55498	0.14771	8.4017E-05	-0.10784	-6.1336E-05	0.039876	2.2681E-05	568.7846717412039	50.061	1.153	50.061	49.733	50.886	0					79	40	3	0	0	0	0.00648	4	10352	10303;10352;10403;10432		78.06	48.979	1	361360			4824	2281	3230	3252	6776;6777;6778;6779	6777					-0.0073798062219339045
FPQYPDKEL	9	Unmodified	_FPQYPDKEL_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7848510742188	2	568.784764	1135.55498	0.21874	0.00012442	0.039525	2.2481E-05	0.25827	0.0001469	568.7846773073057	49.993	0.92093	50.066	49.717	50.638	0.07312					80	32	4	0	0	0	0.0093024	2	10196	10150;10196		69.338	43.939	1	378960			4825	2281	3230	3252	6780;6781	6781					-0.0073798062219339045
FPQYVMDVL	9	Oxidation (M)	_FPQYVM(Oxidation (M))DVL_		FPQYVM(1)DVL		FPQYVM(60)DVL	0	0	1		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2757568359375	2	564.275718	1126.53688	0.3741	0.00021109	0.017126	9.6636E-06	0.39122	0.00022076	564.2755626772421	75.593	0.49701	75.593	75.352	75.849	0					34	22	2	0	0	0	0.017478	1	18078	18078		60.074	22.1	1	1547400			4826	1168	3231	3253	6782	6782		66			-0.02132438868557074
FPQYVMDVL	9	Oxidation (M)	_FPQYVM(Oxidation (M))DVL_		FPQYVM(1)DVL		FPQYVM(44)DVL	0	0	1		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.777587890625	2	564.275718	1126.53688	0.33972	0.0001917	-0.053136	-2.9983E-05	0.28659	0.00016171	564.2754801547551	76.105	1.227	76.105	75.917	77.144	0					99	57	2	0	0	0	0.048027	1	18262	18262		43.772	18.373	1	1136300			4827	1168	3231	3253	6783	6783		66			-0.02132438868557074
FPQYVMDVL	9	Unmodified	_FPQYVMDVL_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2792358398438	2	556.27826	1110.54197	0.45652	0.00025395	-0.039627	-2.2044E-05	0.41689	0.00023191	556.2779945866511	86.013	1.123	86.013	85.708	86.831	0					76	34	3	0	0	0	0.03918	2	21261	21261;21312		45.7	18.816	1	1429500			4828	1168	3231	3254	6784;6785	6784					-0.008881350059255055
FPQYVMDVL	9	Unmodified	_FPQYVMDVL_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.279052734375	2	556.27826	1110.54197	0.69329	0.00038566	-0.38348	-0.00021332	0.30982	0.00017234	556.2776287796726	86.016	1.2684	86.041	85.695	86.963	0.025169					86	43	3	0	0	0	0.006264	3	21100	21100;21148;21183		78.728	51.844	1	1207500			4829	1168	3231	3254	6786;6787;6788	6786					-0.008881350059255055
FPRHIEPEL	9	Unmodified	_FPRHIEPEL_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.3058471679688	2	569.306198	1136.59784	-0.2194	-0.00012491	-0.60789	-0.00034608	-0.82729	-0.00047098	569.3058149647634	44.553	1.3479	44.553	44.269	45.617	0					98	47	4	0	0	0	0.010553	1	8673	8673		65.474	0	1	856260			4830	2193	3232	3255	6789	6789					0.035008342259061465
FPRHIEPEL	9	Unmodified	_FPRHIEPEL_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.3060302734375	2	569.306198	1136.59784	-0.012489	-7.1101E-06	-0.38931	-0.00022164	-0.4018	-0.00022875	569.3058982857656	44.441	1.2329	44.529	44.244	45.477	0.08754					100	45	4	0	0	0	0.0047429	2	8513	8513;8563		83.429	0	1	746850			4831	2193	3232	3255	6790;6791	6790					0.035008342259061465
FPRIQVTSL	9	Unmodified	_FPRIQVTSL_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7947387695312	2	530.811116	1059.60768	0.49905	0.0002649	1.0866	0.0005768	1.5857	0.0008417	530.8114312677156	78.459	0.21952	78.489	78.286	78.505	0.030159					11	7	2	0	0	0	0.29576	1	18817	18817		7.2892	0	1	129040			4832	552	3233	3256	6792	6792					0.08026022231297247
FPRLEPKVF	9	Unmodified	_FPRLEPKVF_					0	0	0			REV__ENSG00000178795|ENST00000315938|GDPD4	REV__ENSG00000178795|ENST00000315938|GDPD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2976684570312	2	566.829309	1131.64407	0.3676	0.00020837	1.1994	0.00067984	1.567	0.0008882	567.32943255123	82.996	0.69051	82.996	82.651	83.341	0					51	23	3	0	0	0	0.24749	1	20290	20290		9.3474	1.4373	1	99065	+		4833	10460	3234	3257	6793	6793					0.08350899127981393
FPRRSFRPNL	10	Unmodified	_FPRRSFRPNL_					0	0	0		nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	430.8879089355469	3	430.579034	1288.71527	0.57339	0.00024689	1.2553	0.00054051	1.8287	0.0007874	430.57943772967366	62.677	0.57761	62.677	62.392	62.969	0					47	20	3	0	0	0	0.43573	1	14217	14217		7.4771	1.6089	1	249410			4834	3274	3235	3258	6794	6794					0.08246411885374982
FPRSMVEF	8	Unmodified	_FPRSMVEF_					0	0	0		PC|p.V944M|1|0.11|ENSG00000173599|chr11:66850005-66850005|C/T|missense_variant	PC|p.V944M|1|0.11|ENSG00000173599|chr11:66850005-66850005|C/T|missense_variant	PC|p.V944M|1|0.11|ENSG00000173599|chr11:66850005-66850005|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8238830566406	2	506.74967	1011.48479	0.16589	8.4064E-05	0.18479	9.3644E-05	0.35068	0.00017771	506.74972912597997	60.562	0.70117	60.635	60.239	60.94	0.073421					31	24	2	0	0	0	0.35759	1	13328	13328		14.838	0	1	113560			4835	7661	3236	3259	6795	6795					-0.020495574916367332
FPSAFDLSLL	10	Unmodified	_FPSAFDLSLL_					0	0	0			REV__ENST00000473691.1_1_X:79938122-79975072:-|nuORF	REV__ENST00000473691.1_1_X:79938122-79975072:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2978515625	2	555.297507	1108.58046	0.95362	0.00052954	-0.68483	-0.00038028	0.2688	0.00014926	555.297026447917	67.301	0.92319	67.366	66.982	67.905	0.065071					52	31	2	0	0	0	0.3198	1	15449	15449		20.454	0	1	143030	+		4836	10032	3237	3260	6796	6796					0.030514939002614483
FPSAPDVKA	9	Unmodified	_FPSAPDVKA_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.24755859375	2	466.247818	930.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.658	1	43.658	43.158	44.158	0								0	0	0	0.0052898	1	8398	8398		72.968	33.011	1				4837	485	3238	3261	6797	6797					0.013060960061352489
FPSAPDVKA	9	Unmodified	_FPSAPDVKA_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.2475280761719	2	466.247818	930.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.822	1	43.822	43.322	44.322	0								0	0	0	0.036979	1	8448	8448		53.833	21.527	1				4838	485	3238	3261	6798	6798					0.013060960061352489
FPSAPDVKA	9	Unmodified	_FPSAPDVKA_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.2475891113281	2	466.247818	930.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.584	1	43.673	43.173	44.173	0.088924								0	0	0	0.0040281	1	8249	8249		76.825	36.867	1				4839	485	3238	3261	6799	6799					0.013060960061352489
FPSAPDVKA	9	Unmodified	_FPSAPDVKA_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.2475891113281	2	466.247818	930.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.727	1	43.816	43.316	44.316	0.088924								0	0	0	0.036979	1	8292	8292		53.833	13.875	1				4840	485	3238	3261	6800	6800					0.013060960061352489
FPSCAPRCL	9	Unmodified	_FPSCAPRCL_					0	0	0		ENST00000520791.5_1_8:99956895-99957015:+|nuORF	ENST00000520791.5_1_8:99956895-99957015:+|nuORF	ENST00000520791.5_1_8:99956895-99957015:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.23748779296875	2	497.235873	992.457192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.651	1	89.685	89.185	90.185	0.034065								0	0	0	0.25361	1	22238	22238		8.5933	1.8701	1				4841	6956	3239	3262	6801	6801					-0.03933784023536191
FPSDLDLDMF	10	Oxidation (M)	_FPSDLDLDM(Oxidation (M))F_		FPSDLDLDM(1)F		FPSDLDLDM(42)F	0	0	1		nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000118689|ENST00000406360|FOXO3	nc|ENSG00000118689|O43524-2|FOXO3	nc|ENSG00000118689|O43524-2|FOXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.265625	2	608.265547	1214.51654	0.75788	0.00046099	-0.47227	-0.00028726	0.28561	0.00017373	608.2651189623513	83.676	0.92567	83.676	83.228	84.154	0					56	31	2	0	0	0	0.12944	1	20578	20578		41.84	35.116	1	165310			4842	2043	3240	3263	6802	6802		126			-0.08213654319047237
FPSDLDLDMF	10	Oxidation (M)	_FPSDLDLDM(Oxidation (M))F_		FPSDLDLDM(1)F		FPSDLDLDM(56)F	0	0	1		nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000118689|ENST00000406360|FOXO3	nc|ENSG00000118689|O43524-2|FOXO3	nc|ENSG00000118689|O43524-2|FOXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.265869140625	2	608.265547	1214.51654	0.59935	0.00036457	0.17155	0.00010435	0.7709	0.00046891	608.2654694647088	85.585	1.2186	85.585	85.189	86.408	0					83	50	3	0	0	0	0.055325	2	21171	21117;21171		56.177	42.271	1	261130			4843	2043	3240	3263	6803;6804	6804		126			-0.08213654319047237
FPSDLDLDMF	10	Oxidation (M)	_FPSDLDLDM(Oxidation (M))F_		FPSDLDLDM(1)F		FPSDLDLDM(65)F	0	0	1		nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000118689|ENST00000406360|FOXO3	nc|ENSG00000118689|O43524-2|FOXO3	nc|ENSG00000118689|O43524-2|FOXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.7678833007812	2	608.265547	1214.51654	0.85516	0.00052016	-0.21197	-0.00012894	0.64319	0.00039123	608.2652263714743	85.51	1.2095	85.536	85.117	86.327	0.025169					87	46	2	0	0	0	0.023231	3	20976	20963;20976;21031		65.235	55.161	1	244120			4844	2043	3240	3263	6805;6806;6807	6806		126			-0.08213654319047237
FPSDSLILGNY	11	Unmodified	_FPSDSLILGNY_					0	0	0		ENSG00000176009|ENST00000531618|ASCL3	ENSG00000176009|ENST00000531618|ASCL3	ENSG00000176009|ENST00000531618|ASCL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.20892333984375	3	409.208161	1224.60265	0.40192	0.00016447	1.5318	0.00062684	1.9338	0.00079131	409.5431942732556	70.867	0.77466	70.926	70.689	71.464	0.058578					56	28	3	0	0	0	0.37654	1	16498	16498		9.2438	0	1	429320			4845	4645	3241	3264	6808	6808					-0.0006632642196109373
FPSEVLTIF	9	Unmodified	_FPSEVLTIF_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7871704101562	2	526.786776	1051.559	0.32812	0.00017285	-0.14807	-7.7999E-05	0.18005	9.4849E-05	526.7868146134413	92.05	0.59687	92.086	91.774	92.371	0.036522					47	20	3	0	0	0	0.065541	1	22965	22965		39.957	3.8303	1	229960			4846	1734	3242	3265	6809	6809					0.035281088715237274
FPSEVLTIF	9	Unmodified	_FPSEVLTIF_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	526.786776	1051.559	0.48537	0.00025569	-0.57505	-0.00030293	-0.089681	-4.7243E-05	526.7867360343076	92.076	0.58987	92.076	91.815	92.405	0	-0.0049892	-0.00020275	NaN	39.957	60	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223490			4847	1734	3242	3265							0.035281088715237274
FPSEVLTIF	9	Unmodified	_FPSEVLTIF_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	526.786776	1051.559	0.32812	0.00017285	-0.14807	-7.7999E-05	0.18005	9.4849E-05	526.7868146134413	92.05	0.59687	92.086	91.774	92.371	0.036522	0.0049892	0.00024711	NaN	39.957	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229960			4848	1734	3242	3265							0.035281088715237274
FPSFEPRNL	9	Unmodified	_FPSFEPRNL_					0	0	0		ENST00000575981.1_1_16:3022956-3024767:-|nuORF;nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	ENST00000575981.1_1_16:3022956-3024767:-|nuORF	ENST00000575981.1_1_16:3022956-3024767:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.811767578125	2	553.785099	1105.55564	0.30473	0.00016875	-0.30416	-0.00016844	0.00056434	3.1252E-07	553.785044720957	59.413	0.30211	59.413	59.277	59.579	0					15	11	2	0	0	0	0.22821	1	13177	13177		19.362	9.9788	1	66561			4849	2369	3243	3266	6810	6810					0.007088588175292898
FPSFGLWL	8	Unmodified	_FPSFGLWL_					0	0	0			REV__ENST00000282120.6_1_2:85547086-85547299:-|nuORF	REV__ENST00000282120.6_1_2:85547086-85547299:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7579345703125	2	483.757821	965.501089	0.038245	1.8501E-05	0.19301	9.337E-05	0.23125	0.00011187	483.7577990016786	77.302	0.95493	77.302	77.059	78.013	0					54	39	2	0	0	0	0.11109	1	18645	18645		52.693	3.0242	1	709260	+		4850	11299	3244	3267	6811	6811					0.016958917367674076
FPSFLTNSL	9	Unmodified	_FPSFLTNSL_					0	0	0		ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2683715820312	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.719	1	83.719	83.219	84.219	0								0	0	0	0.029669	1	20595	20595		57.722	1.5449	1				4851	1268	3245	3268	6812	6812					0.011666516946434058
FPSFLTNSL	9	Unmodified	_FPSFLTNSL_					0	0	0		ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2684936523438	2	513.26875	1024.52295	0.29628	0.00015207	1.2524	0.00064281	1.5487	0.00079488	513.2684365654316	83.653	0.42125	83.675	83.527	83.948	0.021744					36	14	3	0	0	0	0.0569	1	20428	20428		41.84	5.7126	1	190070			4852	1268	3245	3268	6813	6813					0.011666516946434058
FPSIGTLCLF	10	Unmodified	_FPSIGTLCLF_					0	0	0			REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2864379882812	2	549.288628	1096.5627	0.39356	0.00021618	-4.3649	-0.0023976	-3.9714	-0.0021814	549.2859181136915	94.881	0.65102	94.881	94.486	95.137	0					33	26	2	0	0	0	0.36288	1	23949	23949		15.847	0	1	131900	+		4853	8166	3246	3269	6814	6814					0.01828455373720317
FPSIGTLCLF	10	Unmodified	_FPSIGTLCLF_					0	0	0			REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.288628	1096.5627	0.34966	0.00019206	-4.7231	-0.0025944	-4.3735	-0.0024023	549.2858034376125	94.832	0.48019	94.871	94.691	95.171	0.038086	-0.0051089	-0.00013951	NaN	15.847	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112390	+		4854	8166	3246	3269							0.01828455373720317
FPSLHTPLS	9	Unmodified	_FPSLHTPLS_					0	0	0			REV__ENST00000416410.5_3_6:31696977-31697521:-|nuORF	REV__ENST00000416410.5_3_6:31696977-31697521:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7690124511719	2	499.768917	997.523281	0.21981	0.00010985	0.061093	3.0532E-05	0.2809	0.00014039	499.7688381154396	52.536	1.0823	52.536	52.305	53.388	0					100	40	4	0	0	0	0.25209	1	11239	11239		12.532	0	1	1227300	+		4855	11638	3247	3270	6815	6815					0.024420714145321654
FPSLQQPQP	9	Unmodified	_FPSLQQPQP_					0	0	0		nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000152601|Q9NR56-7|MBNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2904663085938	2	521.271824	1040.5291	0.18794	9.797E-05	-0.39568	-0.00020626	-0.20773	-0.00010829	521.2718056422283	52.268	1.7199	52.268	51.713	53.433	0					157	63	4	0	0	0	0.17247	1	11140	11140		21.747	1.293	1	2746600			4856	7531	3248	3271	6816	6816					0.010451699261693648
FPSLVAFAL	9	Unmodified	_FPSLVAFAL_					0	0	0			REV__ENSG00000196171|ENST00000359610|OR6K2	REV__ENSG00000196171|ENST00000359610|OR6K2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.77783203125	2	482.778754	963.542954	0.22257	0.00010745	-1.9433	-0.00093819	-1.7207	-0.00083073	482.7776843807559	88.174	0.31316	88.174	88.032	88.345	0					16	11	2	0	0	0	0.21398	1	21952	21952		16.942	3.0362	1	54442	+		4857	10803	3249	3272	6817	6817					0.059724474252675464
FPSLVAFAL	9	Unmodified	_FPSLVAFAL_					0	0	0			REV__ENSG00000196171|ENST00000359610|OR6K2	REV__ENSG00000196171|ENST00000359610|OR6K2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.77783203125	2	482.778754	963.542954	0.071131	3.4341E-05	-2.2283	-0.0010758	-2.1571	-0.0010414	482.7776712491051	88.164	0.30356	88.194	88.052	88.356	0.030037					14	10	2	0	0	0	0.21398	1	21789	21789		16.942	3.0362	1	108230	+		4858	10803	3249	3272	6818	6818					0.059724474252675464
FPSLVAFAL	9	Unmodified	_FPSLVAFAL_					0	0	0			REV__ENSG00000196171|ENST00000359610|OR6K2	REV__ENSG00000196171|ENST00000359610|OR6K2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	482.778754	963.542954	0.22257	0.00010745	-1.9433	-0.00093819	-1.7207	-0.00083073	482.7776843807559	88.174	0.31316	88.174	88.032	88.345	0	-0.010063	0.00016574	NaN	16.942	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54442	+		4859	10803	3249	3272							0.059724474252675464
FPSLVAFAL	9	Unmodified	_FPSLVAFAL_					0	0	0			REV__ENSG00000196171|ENST00000359610|OR6K2	REV__ENSG00000196171|ENST00000359610|OR6K2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	482.778754	963.542954	0.071131	3.4341E-05	-2.2283	-0.0010758	-2.1571	-0.0010414	482.7776712491051	88.164	0.30356	88.194	88.052	88.356	0.030037	0.010063	-0.0001094	NaN	16.942	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108230	+		4860	10803	3249	3272							0.059724474252675464
FPSNLVTEM	9	Oxidation (M)	_FPSNLVTEM(Oxidation (M))_		FPSNLVTEM(1)		FPSNLVTEM(46)	0	0	1		ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2662353515625	2	527.2497	1052.48485	0.37351	0.00019694	0.76768	0.00040476	1.1412	0.0006017	527.2501560635133	57.907	0.31845	57.907	57.65	57.968	0					16	10	2	0	0	0	0.03918	1	12700	12700		45.7	13.394	1	131750			4861	3663	3250	3273	6819	6819		228			-0.03929602282300948
FPSNLVTEML	10	Oxidation (M)	_FPSNLVTEM(Oxidation (M))L_		FPSNLVTEM(1)L		FPSNLVTEM(46)L	0	0	1		ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.7914428710938	2	583.791732	1165.56891	0.19624	0.00011456	-2.9199	-0.0017046	-2.7236	-0.00159	584.290389518744	72.214	1.1258	72.214	71.783	72.909	0					93	39	3	0	0	0	0.095597	1	17168	17168		45.74	24.203	1	267380			4862	3663	3251	3274	6820	6820		228			-0.007250711854112524
FPSNLVTEML	10	Unmodified	_FPSNLVTEML_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8431396484375	2	575.794275	1149.574	0.20147	0.000116	-0.93047	-0.00053576	-0.729	-0.00041976	575.7940055066836	86.773	0.18658	86.801	86.672	86.859	0.027573					12	8	2	0	0	0	0.31595	1	21348	21348		11.495	2.7493	1	154390			4863	3663	3251	3275	6821	6821					0.00519232677220316
FPSPFDPLTL	10	Unmodified	_FPSPFDPLTL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.L485Gfs*21|1|0.5|ENSG00000147130|chrX:71249477-71249478|AA/-|frameshift_variant;ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant;ENST00000489332.1_1_X:70467340-70473105:-|nuORF	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2980346679688	2	567.297507	1132.58046	0.27927	0.00015843	-0.21894	-0.0001242	0.060331	3.4226E-05	567.2978565065144	96.189	1.0491	96.189	95.801	96.851	0					74	41	3	0	0	0	0.24016	1	24402	24402		29.082	5.2918	1	357110			4864	3316	3252	3276	6822	6822					0.019474939002293468
FPSPFDPLTL	10	Unmodified	_FPSPFDPLTL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.L485Gfs*21|1|0.5|ENSG00000147130|chrX:71249477-71249478|AA/-|frameshift_variant;ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant;ENST00000489332.1_1_X:70467340-70473105:-|nuORF	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2977294921875	2	567.297507	1132.58046	0.30983	0.00017577	-0.17834	-0.00010117	0.1315	7.4597E-05	567.2977375077033	96.214	0.53707	96.254	95.946	96.483	0.039772					58	29	3	0	0	0	0.24016	2	24208	24208;24248		29.082	5.6182	1	261930			4865	3316	3252	3276	6823;6824	6823					0.019474939002293468
FPSQGNSDL	9	Unmodified	_FPSQGNSDL_					0	0	0			REV__nc|ENSG00000198483|Q8N283-2|ANKRD35	REV__nc|ENSG00000198483|Q8N283-2|ANKRD35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7218322753906	2	482.722164	963.429775	-0.84616	-0.00040846	-0.19738	-9.5282E-05	-1.0435	-0.00050374	482.7219906513892	41.697	1.2225	41.697	41.459	42.682	0					125	43	5	0	0	0	0.30005	1	7913	7913		6.7232	1.4925	1	1282900	+		4866	10898	3253	3277	6825	6825					-0.053402727585535104
FPSRNKLFDHL	11	Unmodified	_FPSRNKLFDHL_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;ENST00000509626.1_1_5:34954007-34954816:+|nuORF	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.5826416015625	3	458.582333	1372.72517	0.07686	3.5247E-05	-0.43855	-0.00020111	-0.36169	-0.00016586	458.5821527834408	45.966	0.89305	45.966	45.556	46.449	0					79	30	3	0	0	0	0.30398	1	9056	9056		17.572	14.5	1	138580			4867	4301	3254	3278	6826	6826					0.053715551001005224
FPSRNKLFDHL	11	Unmodified	_FPSRNKLFDHL_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;ENST00000509626.1_1_5:34954007-34954816:+|nuORF	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.5820007324219	3	458.582333	1372.72517	-0.044865	-2.0574E-05	-0.15589	-7.1486E-05	-0.20075	-9.2061E-05	458.5822767644537	45.765	0.98363	45.85	45.475	46.459	0.085617					88	36	3	0	0	0	0.33915	1	8882	8882		13.535	8.819	1	130830			4868	4301	3254	3278	6827	6827					0.053715551001005224
FPSSALCASVT	11	Unmodified	_FPSSALCASVT_					0	0	0			REV__ENST00000263097.8_1_19:1037929-1038361:+|nuORF	REV__ENST00000263097.8_1_19:1037929-1038361:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2630004882812	2	541.762975	1081.5114	-0.084305	-4.5673E-05	-0.037157	-2.0131E-05	-0.12146	-6.5804E-05	541.7628813989222	31.27	0.38284	31.27	31.049	31.432	0					25	18	2	0	0	0	0.40693	1	4658	4658		2.7352	0	1	24190	+		4869	11240	3255	3279	6828	6828					-0.0260991339098382
FPSSLPPVSL	10	Unmodified	_FPSSLPPVSL_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.753662109375	2	522.292225	1042.5699	0.12712	6.6391E-05	-2.5426	-0.001328	-2.4155	-0.0012616	522.2909282955738	58.719	0.42635	58.789	58.593	59.02	0.070477					22	14	2	0	0	0	0.30149	1	12808	12808		20.454	1.0917	1	113300			4870	3632	3256	3280	6829	6829					0.050315112458065414
FPSSLTSSL	9	Unmodified	_FPSSLTSSL_					0	0	0		ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;nc|ENSG00000204852|Q2MV58-6|TCTN1	ENST00000397656.8_1_12:111066004-111085694:+|nuORF	ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7452392578125	2	469.745108	937.475663	0.63333	0.0002975	-0.39833	-0.00018711	0.235	0.00011039	469.74490282699736	66.339	0.41788	66.339	66.137	66.555	0					23	15	2	0	0	0	0.20358	1	15294	15294		18.146	3.3081	1	100270			4871	5496	3257	3281	6830	6830					0.0044237242368581065
FPSSLTSSL	9	Unmodified	_FPSSLTSSL_					0	0	0		ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;nc|ENSG00000204852|Q2MV58-6|TCTN1	ENST00000397656.8_1_12:111066004-111085694:+|nuORF	ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	469.745108	937.475663	0.63333	0.0002975	-0.39833	-0.00018711	0.235	0.00011039	469.74490282699736	66.339	0.41788	66.339	66.137	66.555	0	0.0027218	-1.3784E-05	NaN	18.146	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100270			4872	5496	3257	3281							0.0044237242368581065
FPSSLTSSL	9	Unmodified	_FPSSLTSSL_					0	0	0		ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;nc|ENSG00000204852|Q2MV58-6|TCTN1	ENST00000397656.8_1_12:111066004-111085694:+|nuORF	ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	469.745108	937.475663	0.3572	0.00016779	-0.33214	-0.00015602	0.025057	1.1771E-05	469.7450180234566	66.266	0.41528	66.333	66.189	66.604	0.066872	-0.0027218	4.8397E-05	NaN	18.146	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106840			4873	5496	3257	3281							0.0044237242368581065
FPSTAEHTL	9	Unmodified	_FPSTAEHTL_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.7481384277344	2	501.748182	1001.48181	-0.31594	-0.00015852	0.68157	0.00034198	0.36563	0.00018346	501.7483762910975	40.632	1.2574	40.632	40.123	41.38	0					109	44	4	0	0	0	0.0012363	2	7449	7449;7496		120.45	82.275	1	363130			4874	4862	3258	3282	6831;6832	6831					-0.0188710934479559
FPSTAEHTL	9	Unmodified	_FPSTAEHTL_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.7481994628906	2	501.748182	1001.48181	-0.154	-7.7268E-05	0.58325	0.00029265	0.42925	0.00021538	501.74831477038634	40.494	1.2423	40.583	40.09	41.332	0.089645					113	47	4	0	0	0	0.003963	2	7322	7281;7322		103.75	59.976	1	295590			4875	4862	3258	3282	6833;6834	6834					-0.0188710934479559
FPSTETATL	9	Unmodified	_FPSTETATL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.258056640625	2	483.742565	965.470577	0.12856	6.2191E-05	0.19155	9.2659E-05	0.32011	0.00015485	483.7425118501599	56.077	0.59694	56.077	55.497	56.094	0					35	20	2	0	0	0	0.10833	1	12088	12088		30.637	6.616	1	151190			4876	2006	3259	3283	6835	6835					-0.01353931438939071
FPSTETATL	9	Unmodified	_FPSTETATL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.25811767578125	2	483.742565	965.470577	0.044536	2.1544E-05	0.20967	0.00010143	0.2542	0.00012297	483.7426560388685	55.999	0.62527	56.065	55.518	56.144	0.066452					38	22	2	0	0	0	0.21603	1	11938	11938		20.454	4.6064	1	156040			4877	2006	3259	3283	6836	6836					-0.01353931438939071
FPSVLVEEL	9	Unmodified	_FPSVLVEEL_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7843017578125	2	516.784233	1031.55391	0.54451	0.00028139	0.038641	1.9969E-05	0.58315	0.00030136	516.7841732172473	83.37	0.49249	83.37	83.141	83.634	0					27	16	2	0	0	0	0.0569	1	20507	20507		41.84	16.44	1	114370			4878	2853	3260	3284	6837	6837					0.039398050088948366
FPSVLVEEL	9	Unmodified	_FPSVLVEEL_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7847900390625	2	516.784233	1031.55391	0.3029	0.00015653	0.55655	0.00028762	0.85945	0.00044415	516.7843456698723	83.359	0.44753	83.38	83.194	83.641	0.021744					23	15	2	0	0	0	0.083124	1	20329	20329		36.127	10.728	1	142960			4879	2853	3260	3284	6838	6838					0.039398050088948366
FPSWAMELL	9	Unmodified	_FPSWAMELL_					0	0	0		ENST00000510369.5_1_5:32355868-32383900:-|nuORF;ENSG00000056097|ENST00000265069|ZFR	ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENST00000510369.5_1_5:32355868-32383900:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.272705078125	2	547.272978	1092.5314	0.62054	0.00033961	-0.30776	-0.00016843	0.31278	0.00017118	547.272676688523	98.019	0.44077	98.019	97.806	98.246	0					49	23	3	0	0	0	0.19398	1	24951	24951		19.257	4.0085	1	285420			4880	617	3261	3285	6839	6839					-0.011161176603764034
FPSWAMELL	9	Unmodified	_FPSWAMELL_					0	0	0		ENST00000510369.5_1_5:32355868-32383900:-|nuORF;ENSG00000056097|ENST00000265069|ZFR	ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENST00000510369.5_1_5:32355868-32383900:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.273193359375	2	547.272978	1092.5314	0.60282	0.00032991	-0.26747	-0.00014638	0.33535	0.00018353	547.2727168054081	97.984	0.54256	98.024	97.77	98.312	0.040855					57	27	3	0	0	0	0.074645	2	24794	24752;24794		37.974	11.706	1	553400			4881	617	3261	3285	6840;6841	6841					-0.011161176603764034
FPSYRDVTL	9	Unmodified	_FPSYRDVTL_					0	0	0		ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2852783203125	2	549.284931	1096.55531	-0.0059649	-3.2764E-06	1.3005	0.00071432	1.2945	0.00071104	549.2857071881514	58.833	0.38554	58.833	58.708	59.093	0					23	13	2	0	0	0	0.11557	1	13022	13022		41.84	1.8823	1	273120			4882	4057	3262	3286	6842	6842					0.010894390976773138
FPSYRDVTL	9	Unmodified	_FPSYRDVTL_					0	0	0		ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2855834960938	2	549.284931	1096.55531	0.2872	0.00015775	0.78195	0.00042952	1.0692	0.00058727	549.2854580235088	58.775	0.48726	58.845	58.691	59.178	0.070477					23	18	2	0	0	0	0.064059	1	12862	12862		57.722	27.085	1	284780			4883	4057	3262	3286	6843	6843					0.010894390976773138
FPSYRHQF	8	Unmodified	_FPSYRHQF_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.27587890625	2	541.264333	1080.51411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.906	1	41.906	41.406	42.406	0								0	0	0	0.38796	1	7868	7868		14.582	4.5078	1		+		4884	8823	3263	3287	6844	6844					-0.022922771511503015
FPTDFLEEI	9	Unmodified	_FPTDFLEEI_					0	0	0		nc|ENSG00000185482|Q96MF2-3|STAC3;nc|ENSG00000185482|Q96MF2-2|STAC3;ENSG00000185482|ENST00000332782|STAC3	nc|ENSG00000185482|Q96MF2-3|STAC3	nc|ENSG00000185482|Q96MF2-3|STAC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7713012695312	2	555.771322	1109.52809	0.69698	0.00038736	-0.32825	-0.00018243	0.36873	0.00020493	555.771213331955	92.291	0.57153	92.291	92.037	92.608	0					37	21	3	0	0	0	0.14091	1	23211	23211		25.399	1.3787	1	127120			4885	5026	3264	3288	6845	6845					-0.022290892333558077
FPTDLFEIF	9	Unmodified	_FPTDLFEIF_					0	0	0		nc|ENSG00000163491|Q6ZWH5-4|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7611083984375	2	564.784233	1127.55391	0.35808	0.00020224	-1.3109	-0.00074036	-0.95279	-0.00053812	564.7835388415518	91.387	1.165	91.387	90.762	91.927	0					65	42	2	0	0	0	0.20004	1	22878	22878		16.942	2.104	1	210120			4886	3907	3265	3289	6846	6846					-0.0047619499109714525
FPTDTLQEL	9	Unmodified	_FPTDTLQEL_					0	0	0		ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.3184814453125	2	532.268947	1062.52334	0.52343	0.0002786	-1.2348	-0.00065725	-0.71138	-0.00037864	532.7691529863102	71.359	0.74018	71.417	70.967	71.707	0.058578					55	26	3	0	0	0	0.23478	1	16695	16695		17.113	2.2746	1	156490			4887	5545	3266	3290	6847	6847					-0.005419733761300449
FPTEEFCPPPP	11	Unmodified	_FPTEEFCPPPP_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.85821533203125	3	420.858363	1259.55326	0.44001	0.00018518	0.0072153	3.0366E-06	0.44723	0.00018822	420.85838082492535	95.567	1.3591	95.567	94.747	96.106	0					139	63	3	0	0	0	0.36721	1	24198	24198		10.315	0.55098	1	495560			4888	5440	3267	3291	6848	6848					-0.06613357702462963
FPTEEFCPPPP	11	Unmodified	_FPTEEFCPPPP_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.1924133300781	3	420.858363	1259.55326	0.060137	2.5309E-05	0.3845	0.00016182	0.44463	0.00018713	420.85848192498383	95.404	1.1945	95.443	94.842	96.036	0.038872					131	54	4	0	0	0	0.36721	2	24009	24009;24055		10.315	0.55098	1	386780			4889	5440	3267	3291	6849;6850	6849					-0.06613357702462963
FPTGDSKVVL	10	Unmodified	_FPTGDSKVVL_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.I969V|1|0.21|ENSG00000181222|chr17:7503269-7503269|A/G|missense_variant	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.795166015625	2	531.795132	1061.57571	0.20973	0.00011153	-0.076012	-4.0423E-05	0.13372	7.1111E-05	531.7950140126173	52.095	1.3716	52.095	51.713	53.085	0					81	48	2	0	0	0	0.13912	1	10961	10961		40.725	20.271	1	158810			4890	4832	3268	3292	6851	6851					0.04738609757487211
FPTGDSKVVL	10	Unmodified	_FPTGDSKVVL_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.I969V|1|0.21|ENSG00000181222|chr17:7503269-7503269|A/G|missense_variant	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7953491210938	2	531.795132	1061.57571	0.38592	0.00020523	-0.43268	-0.0002301	-0.046761	-2.4867E-05	531.794779237985	52.118	1.2031	52.185	51.707	52.911	0.067169					68	45	2	0	0	0	0.35616	1	10958	10958		16.566	6.4919	1	120970			4891	4832	3268	3292	6852	6852					0.04738609757487211
FPTGTLESIR	10	Unmodified	_FPTGTLESIR_					0	0	0			REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.82373046875	2	560.803488	1119.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.384	1	76.384	75.884	76.884	0								0	0	0	0.26818	1	18360	18360		21.537	2.28	1		+		4892	7888	3269	3293	6853	6853					0.03741110643431966
FPTHNFISF	9	Unmodified	_FPTHNFISF_					0	0	0		ENST00000375140.7_1_11:119061011-119064134:-|nuORF	ENST00000375140.7_1_11:119061011-119064134:-|nuORF	ENST00000375140.7_1_11:119061011-119064134:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.813232421875	2	555.274367	1108.53418	0.5701	0.00031656	2.5942	0.0014405	3.1643	0.0017571	555.776717659508	79.349	0.2681	79.349	79.13	79.398	0					13	8	2	0	0	0	0.25051	1	19236	19236		7.9102	1.5561	1	108090			4893	6239	3270	3294	6854	6854					-0.015745262111977354
FPTIHGNDEV	10	Unmodified	_FPTIHGNDEV_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.769287109375	2	564.769645	1127.52474	0.024807	1.401E-05	-0.11663	-6.5871E-05	-0.091826	-5.186E-05	564.7694203073643	46.292	0.38062	46.292	46.069	46.449	0					28	12	3	0	0	0	0.3186	1	9200	9200		20.581	11.198	1	108000			4894	834	3271	3295	6855	6855					-0.03392339287370305
FPTIHGNDEV	10	Unmodified	_FPTIHGNDEV_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7698364257812	2	564.769645	1127.52474	0.067946	3.8374E-05	0.37389	0.00021116	0.44183	0.00024953	564.769695150398	46.17	0.34945	46.255	46.077	46.426	0.085617					25	11	3	0	0	0	0.37637	1	9026	9026		14.405	5.0223	1	112270			4895	834	3271	3295	6856	6856					-0.03392339287370305
FPTISLEF	8	Unmodified	_FPTISLEF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.25262451171875	2	477.252569	952.490584	-0.072523	-3.4612E-05	0.49068	0.00023418	0.41815	0.00019957	477.25276978785496	89.375	0.48004	89.375	89.194	89.674	0					34	17	3	0	0	0	0.17432	1	22314	22314		44.407	19.733	1	314910			4896	883	3272	3296	6857	6857					0.012438642916777098
FPTISLEF	8	Unmodified	_FPTISLEF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.252685546875	2	477.252569	952.490584	-0.056351	-2.6894E-05	0.49742	0.0002374	0.44107	0.0002105	477.2527938532173	89.31	0.45913	89.342	89.144	89.603	0.032257					29	16	2	0	0	0	0.28175	1	22143	22143		36.044	11.37	1	504200			4897	883	3272	3296	6858	6858					0.012438642916777098
FPTKQESQL	9	Unmodified	_FPTKQESQL_					0	0	0		ENSG00000184304|ENST00000331968|PRKD1;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENSG00000115825|ENST00000234179|PRKD3	ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2824096679688	2	539.282389	1076.55022	0.16342	8.8128E-05	-0.10011	-5.3985E-05	0.063312	3.4143E-05	539.2822664049507	35.359	1.5481	35.359	34.854	36.402	0					139	57	3	0	0	0	0.17305	1	5910	5910		31.268	10.815	1	159250			4898	4966	3273	3297	6859	6859					0.01501135235048423
FPTKQESQL	9	Unmodified	_FPTKQESQL_					0	0	0		ENSG00000184304|ENST00000331968|PRKD1;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENSG00000115825|ENST00000234179|PRKD3	ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2822265625	2	539.282389	1076.55022	0.30563	0.00016482	-0.22251	-0.00012	0.08312	4.4825E-05	539.282187149569	35.291	1.5238	35.37	34.885	36.409	0.078827					139	59	3	0	0	0	0.20162	1	5716	5716		18.373	6.1324	1	135080			4899	4966	3273	3297	6860	6860					0.01501135235048423
FPTLEITL	8	Unmodified	_FPTLEITL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2681884765625	2	467.268219	932.521884	0.33192	0.0001551	-0.12016	-5.6147E-05	0.21176	9.895E-05	467.2680934559826	88.597	0.76501	88.597	88.288	89.053	0					77	30	3	0	0	0	0.016	2	22080	22037;22080		81.864	28.288	1	1156800			4900	4925	3274	3298	6861;6862	6862					0.05292437325749688
FPTLEITL	8	Unmodified	_FPTLEITL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2682189941406	2	467.268219	932.521884	0.15095	7.0535E-05	0.063205	2.9534E-05	0.21416	0.00010007	467.26816602689877	88.513	0.73232	88.543	88.224	88.957	0.030037					83	29	4	0	0	0	0.016	2	21893	21849;21893		81.864	28.288	1	1355300			4901	4925	3274	3298	6863;6864	6864					0.05292437325749688
FPTLTNINEN	10	Unmodified	_FPTLTNINEN_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3067016601562	2	581.790578	1161.5666	0.52306	0.00030431	1.0558	0.00061426	1.5789	0.00091857	581.7911080230124	106.06	0.07196	106.09	106.03	106.11	0.029739					10	8	2	0	0	0	0.31761	1	27136	27136		5.2969	0.96765	1	48488			4902	5404	3275	3299	6865	6865					-0.007717835988614752
FPTLTNINEN	10	Unmodified	_FPTLTNINEN_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	581.790578	1161.5666	0.12948	7.5328E-05	1.9338	0.0011251	2.0633	0.0012004	581.7918240575743	106.3	0.3439	106.3	106.11	106.45	0	0.10339	9.5763E-05	NaN	5.2969	45	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60137			4903	5404	3275	3299							-0.007717835988614752
FPTNEEQFI	9	Unmodified	_FPTNEEQFI_					0	0	0			REV__nc|ENSG00000132359|Q684P5-3|RAP1GAP2	REV__nc|ENSG00000132359|Q684P5-3|RAP1GAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2693481445312	2	562.766571	1123.51859	0.4525	0.00025465	1.3132	0.00073901	1.7657	0.00099366	563.2687648677753	81.73	0.74796	81.752	81.523	82.271	0.021866					40	26	2	0	0	0	0.26705	1	19877	19877		10.8	1.4521	1	153300	+		4904	9112	3276	3300	6866	6866					-0.03822857518912315
FPTNVDLAISV	11	Unmodified	_FPTNVDLAISV_					0	0	0		ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;nc|ENSG00000155393|Q7Z4Q2-3|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3185424804688	2	588.318971	1174.62339	0.74601	0.00043889	-0.44938	-0.00026438	0.29663	0.00017451	588.3187037194831	81.535	0.60307	81.557	81.134	81.737	0.021866					37	21	2	0	0	0	0.35673	1	19754	19754		11.518	0.71837	1	147770			4905	3587	3277	3301	6867	6867					0.043062639576419315
FPTSSSPVLW	10	Unmodified	_FPTSSSPVLW_					0	0	0			REV__ENST00000422053.3_1_20:368928-376885:+|nuORF	REV__ENST00000422053.3_1_20:368928-376885:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8134765625	2	560.787307	1119.56006	0.598	0.00033535	-0.51353	-0.00028798	0.084464	4.7367E-05	561.2885539290087	83.535	0.23328	83.535	83.425	83.658	0					10	7	2	0	0	0	0.26901	1	20549	20549		32.305	10.559	1	58541	+		4906	11814	3278	3302	6868	6868					0.005063232404154405
FPTVQHQEL	9	Unmodified	_FPTVQHQEL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.782470703125	2	549.782556	1097.55056	-0.1412	-7.7631E-05	0.23526	0.00012934	0.094054	5.1709E-05	549.7825196760684	45.307	0.77476	45.307	45.1	45.874	0					90	26	5	0	0	0	3.0296E-09	4	8916	8865;8916;8962;9014		171.46	111.39	1	969980			4907	2006	3279	3303	6869;6870;6871;6872	6870					0.005685549549070856
FPTVQHQEL	9	Unmodified	_FPTVQHQEL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7826538085938	2	549.782556	1097.55056	0.15411	8.4727E-05	0.13205	7.2601E-05	0.28616	0.00015733	549.7825317045944	45.229	0.66507	45.316	45.089	45.754	0.087543					83	24	4	0	0	0	7.7852E-13	3	8772	8726;8772;8813		184.36	105.63	1	836430			4908	2006	3279	3303	6873;6874;6875	6874					0.005685549549070856
FPTVVIYVM	9	Oxidation (M)	_FPTVVIYVM(Oxidation (M))_		FPTVVIYVM(1)		FPTVVIYVM(82)	0	0	1		nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-3|GPN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7913818359375	2	542.791004	1083.56745	0.6425	0.00034874	-0.17575	-9.5398E-05	0.46675	0.00025335	542.7909814262213	82.156	1.5717	82.156	81.601	83.173	0					130	54	4	0	0	0	0.0052492	2	20149	20044;20149		81.864	60.117	1	883760			4909	5372	3280	3304	6876;6877	6877		305			0.029013395164838585
FPTVVIYVM	9	Oxidation (M)	_FPTVVIYVM(Oxidation (M))_		FPTVVIYVM(1)		FPTVVIYVM(82)	0	0	1		nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-3|GPN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7914428710938	2	542.791004	1083.56745	0.4043	0.00021945	0.25569	0.00013878	0.65998	0.00035823	542.7911556478675	82.053	2.2518	82.075	81.308	83.56	0.021866					167	80	4	0	0	0	0.0052492	3	19949	19898;19949;19999		81.864	62.425	1	1049200			4910	5372	3280	3304	6878;6879;6880	6879		305			0.029013395164838585
FPTVVIYVM	9	Oxidation (M)	_FPTVVIYVM(Oxidation (M))_		FPTVVIYVM(1)		FPTVVIYVM(94)	0	0	1		nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-3|GPN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7911987304688	2	542.791004	1083.56745	0.50766	0.00027555	0.12808	6.9523E-05	0.63575	0.00034508	542.7909281068104	79.871	0.62809	79.897	79.648	80.276	0.026436					60	21	4	0	0	0	0.00056574	1	19275	19275		93.883	59.781	1	1052100			4911	5372	3280	3304	6881	6881		305			0.029013395164838585
FPTWDIFVG	9	Unmodified	_FPTWDIFVG_					0	0	0			REV__OR5V1|p.G207D|1|0.25|ENSG00000243729|chr6:29355576-29355576|C/T|missense_variant	REV__OR5V1|p.G207D|1|0.25|ENSG00000243729|chr6:29355576-29355576|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7921142578125	2	541.271293	1080.52803	0.64341	0.00034826	-2.1411	-0.0011589	-1.4977	-0.00081068	541.2696869917083	93.031	0.49541	93.068	92.863	93.359	0.037369					30	21	2	0	0	0	0.23598	1	23305	23305		15.847	5.0233	1	94684	+		4912	12944	3281	3305	6882	6882					-0.00901044442730381
FPVAEDISLL	10	Unmodified	_FPVAEDISLL_					0	0	0		nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2	nc|ENSG00000100325|Q9H1I8-2|ASCC2	nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3038330078125	2	552.30279	1102.59103	0.24783	0.00013688	0.33468	0.00018485	0.58251	0.00032172	552.3030052940856	86.897	0.63627	86.897	86.738	87.374	0					41	27	2	0	0	0	0.22666	1	21590	21590		30.637	5.2372	1	435150			4913	1184	3282	3306	6883	6883					0.043834765546762355
FPVAEDISLL	10	Unmodified	_FPVAEDISLL_					0	0	0		nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2	nc|ENSG00000100325|Q9H1I8-2|ASCC2	nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3035888671875	2	552.30279	1102.59103	0.32568	0.00017987	0.24835	0.00013716	0.57403	0.00031704	552.3029462972897	86.905	0.60682	86.933	86.724	87.33	0.027573					43	26	2	0	0	0	0.22666	2	21406	21406;21458		30.637	5.2372	1	404360			4914	1184	3282	3306	6884;6885	6884					0.043834765546762355
FPVDCVAM	8	Unmodified	_FPVDCVAM_					0	0	0		nc|ENSG00000258289|Q8WUH1-1|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.19781494140625	2	441.198425	880.382296	0.59304	0.00026165	-3.4684	-0.0015303	-2.8754	-0.0012686	441.19709414836933	87.749	0.30728	87.749	87.547	87.855	0					16	10	2	0	0	0	0.53257	1	21823	21823		6.3541	0.59368	1	76940			4915	7620	3283	3307	6886	6886					-0.06267966554764826
FPVDKPNIV	9	Unmodified	_FPVDKPNIV_					0	0	0		nc|ENSG00000136114|Q9NS62-3|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7935791015625	2	514.792392	1027.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.457	1	97.457	96.957	97.957	0								0	0	0	0.19984	1	24774	24774		18.146	4.2403	1				4916	2768	3284	3308	6887	6887					0.05754930965645144
FPVEDVFTLP	10	Unmodified	_FPVEDVFTLP_					0	0	0		ENST00000485807.1_1_1:227921606-227921849:-|nuORF;ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4	ENST00000485807.1_1_1:227921606-227921849:-|nuORF	ENST00000485807.1_1_1:227921606-227921849:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.303466796875	2	582.30279	1162.59103	0.64487	0.00037551	0.08907	5.1866E-05	0.73394	0.00042737	582.3028834625973	92.065	0.66846	92.065	91.763	92.431	0					66	24	3	0	0	0	0.38104	1	23085	23085		13.906	1.3745	1	231170			4917	908	3285	3309	6888	6888					0.01623476554664194
FPVEDVFTLP	10	Unmodified	_FPVEDVFTLP_					0	0	0		ENST00000485807.1_1_1:227921606-227921849:-|nuORF;ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4	ENST00000485807.1_1_1:227921606-227921849:-|nuORF	ENST00000485807.1_1_1:227921606-227921849:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.3026733398438	2	582.30279	1162.59103	0.6386	0.00037186	0.11102	6.4649E-05	0.74962	0.00043651	582.3029084173438	91.932	0.68354	91.968	91.746	92.429	0.03653					62	23	3	0	0	0	0.28643	1	22918	22918		24.021	9.1823	1	261210			4918	908	3285	3309	6889	6889					0.01623476554664194
FPVEERPAL	9	Unmodified	_FPVEERPAL_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2636108398438	2	529.287474	1056.5604	0.30259	0.00016015	-0.45173	-0.00023909	-0.14914	-7.8939E-05	529.2873535079764	50.418	0.51604	50.491	50.181	50.697	0.07312					18	17	2	0	0	0	0.24683	1	10307	10307		11.495	5.1406	1	67005			4919	4092	3286	3310	6890	6890					0.034377429602727716
FPVEFLIQV	9	Unmodified	_FPVEFLIQV_					0	0	0		nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.3104858398438	2	546.310418	1090.60628	0.47798	0.00026112	0.19088	0.00010428	0.66886	0.0003654	546.310468075928	96.907	0.83554	96.907	96.552	97.387	0					78	39	3	0	0	0	0.20358	2	24552	24552;24642		18.146	1.3745	1	377710			4920	4946	3287	3311	6891;6892	6891					0.06460388142522788
FPVEFLIQV	9	Unmodified	_FPVEFLIQV_					0	0	0		nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.310791015625	2	546.310418	1090.60628	0.48542	0.00026519	0.33188	0.00018131	0.8173	0.0004465	546.3104818152641	96.782	0.57648	96.821	96.588	97.165	0.039772					58	27	3	0	0	0	0.20358	3	24427	24388;24427;24472		18.146	1.3745	1	407350			4921	4946	3287	3311	6893;6894;6895	6894					0.06460388142522788
FPVEHVQLL	9	Unmodified	_FPVEHVQLL_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.3058471679688	2	541.305667	1080.59678	0.52637	0.00028492	-0.3625	-0.00019622	0.16386	8.87E-05	541.3053917917237	63.597	0.71079	63.597	63.261	63.972	0					57	24	3	0	0	0	0.0072241	3	14479	14428;14479;14522		75.761	32.323	1	802000			4922	1605	3288	3312	6896;6897;6898	6897					0.059706198569983826
FPVEHVQLL	9	Unmodified	_FPVEHVQLL_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.3058471679688	2	541.305667	1080.59678	0.53613	0.00029021	-0.095478	-5.1683E-05	0.44065	0.00023853	541.3055780590109	63.475	0.81094	63.546	63.188	63.999	0.071018					64	30	3	0	0	0	0.0046402	3	14304	14256;14304;14352		85.642	30.868	1	811870			4923	1605	3288	3312	6899;6900;6901	6900					0.059706198569983826
FPVELIDFAL	10	Unmodified	_FPVELIDFAL_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.3212280273438	2	582.320983	1162.62741	0.21608	0.00012583	0.23265	0.00013548	0.44873	0.0002613	582.3211388601566	105.3	0.34106	105.3	105.13	105.47	0					59	35	2	0	0	0	0.42335	2	27094	27094;27130		9.3831	0	1	92142			4924	5577	3289	3313	6902;6903	6902					0.05260353451399169
FPVELIDFAL	10	Unmodified	_FPVELIDFAL_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.3209228515625	2	582.320983	1162.62741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.28	1	105.32	104.82	105.82	0.034004								0	0	0	0.33528	1	26940	26940		5.7319	0	1				4925	5577	3289	3313	6904	6904					0.05260353451399169
FPVELIDFAL	10	Unmodified	_FPVELIDFAL_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	582.320983	1162.62741	0.56857	0.00033109	0.12218	7.1149E-05	0.69075	0.00040224	582.3208384868229	105.4	0.04538	105.43	105.41	105.45	0.029732	0.063496	-0.0001228	NaN	9.3831	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37132			4926	5577	3289	3313							0.05260353451399169
FPVEVNSQK	9	Unmodified	_FPVEVNSQK_					0	0	0			REV__nc|ENSG00000136381|P48200-2|IREB2	REV__nc|ENSG00000136381|P48200-2|IREB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2767333984375	2	524.277106	1046.53966	0.17758	9.3103E-05	-0.14166	-7.4269E-05	0.035925	1.8835E-05	524.2770133987791	48.535	1.1426	48.535	48.224	49.367	0					85	39	4	0	0	0	0.17428	1	9939	9939		21.537	1.1224	1	692290	+		4927	9241	3290	3314	6905	6905					0.01825152580613576
FPVEVNTVL	9	Unmodified	_FPVEVNTVL_					0	0	0		nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF	nc|ENSG00000100462|O14744-2|PRMT5	nc|ENSG00000100462|O14744-2|PRMT5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2844543457031	2	509.2844	1016.55425	0.327	0.00016654	-0.028937	-1.4737E-05	0.29807	0.0001518	509.2842746571201	76.183	0.9579	76.183	75.937	76.895	0					119	46	3	0	0	0	0.048027	3	18324	18243;18282;18324		43.772	16.889	1	3436600			4928	1201	3291	3315	6906;6907;6908	6908					0.04663224728756177
FPVEVNTVL	9	Unmodified	_FPVEVNTVL_					0	0	0		nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF	nc|ENSG00000100462|O14744-2|PRMT5	nc|ENSG00000100462|O14744-2|PRMT5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2843933105469	2	509.2844	1016.55425	0.34019	0.00017325	0.057477	2.9272E-05	0.39766	0.00020252	509.2843476134995	76.147	1.0315	76.186	75.908	76.94	0.03923					106	48	3	0	0	0	0.065576	3	18187	18097;18139;18187		39.95	13.066	1	3135000			4929	1201	3291	3315	6909;6910;6911	6911					0.04663224728756177
FPVFATVIL	9	Unmodified	_FPVFATVIL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.8023986816406	2	503.802229	1005.5899	0.44676	0.00022508	0.016881	8.5045E-06	0.46364	0.00023358	503.80218185801675	97.297	0.82412	97.297	96.981	97.806	0					100	38	5	0	0	0	0.030375	3	24673	24673;24719;24765		50.855	14.811	1	3132000			4930	793	3292	3316	6912;6913;6914	6912					0.08733306976421318
FPVFATVIL	9	Unmodified	_FPVFATVIL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.8023681640625	2	503.802229	1005.5899	0.50869	0.00025628	-0.74181	-0.00037372	-0.23312	-0.00011744	503.80180827451477	97.533	0.86848	97.533	97.461	98.33	0					74	43	2	0	0	0	0.092418	1	24811	24811		34.102	5.6156	1	397790			4931	793	3292	3316	6915	6915					0.08733306976421318
FPVFATVIL	9	Unmodified	_FPVFATVIL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.80242919921875	2	503.802229	1005.5899	0.50735	0.0002556	-0.11529	-5.8081E-05	0.39206	0.00019752	503.8021113460325	97.266	0.77905	97.307	97.002	97.781	0.040855					122	37	4	0	0	0	0.0065046	5	24549	24505;24549;24592;24642;24682		77.984	27.129	1	2932800			4932	793	3292	3316	6916;6917;6918;6919;6920	6917					0.08733306976421318
FPVGVFVVA	9	Unmodified	_FPVGVFVVA_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.77337646484375	2	467.773471	933.53239	0.30792	0.00014404	-0.19715	-9.2223E-05	0.11077	5.1815E-05	467.77332036880495	85.792	0.44778	85.792	85.631	86.079	0					30	18	2	0	0	0	0.23437	1	21222	21222		14.582	4.3983	1	76958			4933	3289	3293	3317	6921	6921					0.06296464770844068
FPVGVFVVA	9	Unmodified	_FPVGVFVVA_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.773681640625	2	467.773471	933.53239	0.29202	0.0001366	-0.033441	-1.5643E-05	0.25858	0.00012096	467.77344736043807	85.842	0.48912	85.867	85.572	86.061	0.025169					27	17	2	0	0	0	0.23437	1	21063	21063		14.582	3.4672	1	116800			4934	3289	3293	3317	6922	6922					0.06296464770844068
FPVGVFVVA	9	Unmodified	_FPVGVFVVA_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	467.773471	933.53239	0.30792	0.00014404	-0.19715	-9.2223E-05	0.11077	5.1815E-05	467.77332036880495	85.792	0.44778	85.792	85.631	86.079	0	-0.037517	-8.7422E-05	NaN	14.582	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76958			4935	3289	3293	3317							0.06296464770844068
FPVGVFVVA	9	Unmodified	_FPVGVFVVA_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	467.773471	933.53239	0.29202	0.0001366	-0.033441	-1.5643E-05	0.25858	0.00012096	467.77344736043807	85.842	0.48912	85.867	85.572	86.061	0.025169	0.037517	6.5739E-05	NaN	14.582	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116800			4936	3289	3293	3317							0.06296464770844068
FPVHKVACF	9	Unmodified	_FPVHKVACF_					0	0	0			REV__GNE|p.R277C|1|0.14|ENSG00000159921|chr9:36234073-36234073|G/A|missense_variant	REV__GNE|p.R277C|1|0.14|ENSG00000159921|chr9:36234073-36234073|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.277099609375	2	524.275855	1046.53716	0.16111	8.4466E-05	2.6417	0.001385	2.8028	0.0014695	524.2770900493936	48.434	0.77445	48.514	48.185	48.959	0.080029					73	25	4	0	0	0	0.17247	1	9799	9799		21.747	4.6338	1	569060	+		4937	12659	3294	3318	6923	6923					0.01575025641955108
FPVHRQKL	8	Unmodified	_FPVHRQKL_					0	0	0		ENST00000448668.2_1_3:129200375-129202705:+|nuORF;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	ENST00000448668.2_1_3:129200375-129202705:+|nuORF	ENST00000448668.2_1_3:129200375-129202705:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8065795898438	2	512.806168	1023.59778	0.32264	0.00016545	0.62623	0.00032113	0.94887	0.00048658	512.8064631498601	102.01	0.38512	102.01	101.94	102.32	0					31	25	3	0	0	0	0.53494	2	26194	26194;26243		4.756	0	1	878770			4938	3958	3295	3319	6924;6925	6924					0.08692879016552979
FPVHRQKL	8	Unmodified	_FPVHRQKL_					0	0	0		ENST00000448668.2_1_3:129200375-129202705:+|nuORF;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	ENST00000448668.2_1_3:129200375-129202705:+|nuORF	ENST00000448668.2_1_3:129200375-129202705:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8064575195312	2	512.806168	1023.59778	0.45498	0.00023332	0.11475	5.8842E-05	0.56973	0.00029216	512.8061940769619	101.62	0.37247	101.66	101.59	101.96	0.042656					59	32	2	0	0	0	0.52924	1	25946	25946		8.5933	0	1	661500			4939	3958	3295	3319	6926	6926					0.08692879016552979
FPVHRQKL	8	Unmodified	_FPVHRQKL_					0	0	0		ENST00000448668.2_1_3:129200375-129202705:+|nuORF;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	ENST00000448668.2_1_3:129200375-129202705:+|nuORF	ENST00000448668.2_1_3:129200375-129202705:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8072509765625	2	512.806168	1023.59778	0.4465	0.00022897	0.53248	0.00027306	0.97898	0.00050203	512.8065672517408	102.07	0.34967	102.11	101.96	102.31	0.042656					38	28	3	0	0	0	0.49441	1	26070	26070		13.508	0	1	145160			4940	3958	3295	3319	6927	6927					0.08692879016552979
FPVHRQKL	8	Unmodified	_FPVHRQKL_					0	0	0		ENST00000448668.2_1_3:129200375-129202705:+|nuORF;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	ENST00000448668.2_1_3:129200375-129202705:+|nuORF	ENST00000448668.2_1_3:129200375-129202705:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8069458007812	2	512.806168	1023.59778	0.43368	0.00022239	0.40102	0.00020565	0.83471	0.00042804	512.8064357540502	102.36	0.33221	102.4	102.31	102.64	0.040909					39	21	2	0	0	0	0.52924	1	26112	26112		8.5933	0	1	96508			4941	3958	3295	3319	6928	6928					0.08692879016552979
FPVKDASL	8	Unmodified	_FPVKDASL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.74456787109375	2	438.744911	875.475269	-0.034139	-1.4978E-05	-0.96917	-0.00042522	-1.0033	-0.0004402	438.7445317063194	44.712	0.58138	44.712	44.387	44.968	0					32	20	2	0	0	0	0.49148	1	8703	8703		13.906	2.2658	1	55977			4942	782	3296	3320	6929	6929					0.032549974944686255
FPVKEVFELL	10	Unmodified	_FPVKEVFELL_					0	0	0		ENST00000532696.1_1_11:9225120-9228222:-|nuORF;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	ENST00000532696.1_1_11:9225120-9228222:-|nuORF	ENST00000532696.1_1_11:9225120-9228222:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.8499755859375	2	610.849907	1219.68526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.281	1	83.281	82.781	83.781	0								0	0	0	0.33094	1	20462	20462		10.8	1.4164	1				4943	4955	3297	3321	6930	6930					0.0842061537682639
FPVLDANDL	9	Unmodified	_FPVLDANDL_					0	0	0		nc|ENSG00000089356|Q14802-5|FXYD3;ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3	nc|ENSG00000089356|Q14802-5|FXYD3	nc|ENSG00000089356|Q14802-5|FXYD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.25811767578125	2	502.258382	1002.50221	0.28338	0.00014233	0.023892	1.2E-05	0.30727	0.00015433	502.25839465657384	77.21	0.50308	77.21	76.975	77.478	0					38	23	2	0	0	0	0.0028323	2	18617	18617;18667		110.67	14.564	1	521090			4944	1034	3298	3322	6931;6932	6931					0.0010606131498889226
FPVLDANDL	9	Unmodified	_FPVLDANDL_					0	0	0		nc|ENSG00000089356|Q14802-5|FXYD3;ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3	nc|ENSG00000089356|Q14802-5|FXYD3	nc|ENSG00000089356|Q14802-5|FXYD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2589111328125	2	502.258382	1002.50221	0.39488	0.00019833	-0.32194	-0.0001617	0.072943	3.6636E-05	502.2582597773632	77.194	0.4003	77.228	77.017	77.417	0.034485					25	19	2	0	0	0	0.0042703	2	18449	18449;18494		99.755	23.994	1	650270			4945	1034	3298	3322	6933;6934	6933					0.0010606131498889226
FPVMCNLIF	9	Unmodified	_FPVMCNLIF_					0	0	0			REV__ENSG00000169676|ENST00000304374|DRD5	REV__ENSG00000169676|ENST00000304374|DRD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2710571289062	2	542.271924	1082.52929	0.37583	0.0002038	-0.57206	-0.00031021	-0.19623	-0.00010641	542.2714357734511	91.623	0.92886	91.659	91.384	92.312	0.035446					90	32	4	0	0	0	0.1182	1	22950	22950		28.487	0.85804	1	1720900	+		4946	10180	3299	3323	6935	6935					-0.008668696698123313
FPVNQLFDML	10	Oxidation (M)	_FPVNQLFDM(Oxidation (M))L_		FPVNQLFDM(1)L		FPVNQLFDM(130)L	0	0	1		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3080444335938	2	620.307549	1238.60055	0.073898	4.5839E-05	0.12458	7.728E-05	0.19848	0.00012312	620.3076968736509	91.864	1.6034	91.864	91.269	92.872	0					162	60	4	0	0	0	2.857E-05	6	23081	22971;22986;23030;23081;23130;23176		125.53	100.54	1	792840			4947	3194	3300	3324	6936;6937;6938;6939;6940;6941	6939		210			-0.009210784314518605
FPVNQLFDML	10	Oxidation (M)	_FPVNQLFDM(Oxidation (M))L_		FPVNQLFDM(1)L		FPVNQLFDM(77)L	0	0	1		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8695068359375	2	620.307549	1238.60055	-0.22931	-0.00014225	0.66816	0.00041447	0.43885	0.00027222	620.3078829483951	89.452	0.69091	89.452	89.143	89.834	0					92	26	6	0	0	0	0.03789	1	22373	22373		76.825	58.452	1	870270			4948	3194	3300	3324	6942	6942		210			-0.009210784314518605
FPVNQLFDML	10	Oxidation (M)	_FPVNQLFDM(Oxidation (M))L_		FPVNQLFDM(1)L		FPVNQLFDM(130)L	0	0	1		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3076782226562	2	620.307549	1238.60055	0.057882	3.5905E-05	0.1049	6.5073E-05	0.16279	0.00010098	620.3076792144816	91.713	1.9097	91.749	91.284	93.194	0.036095					152	70	3	0	0	0	2.857E-05	6	22857	22810;22857;22908;22958;23011;23071		125.53	97.9	1	536070			4949	3194	3300	3324	6943;6944;6945;6946;6947;6948	6944		210			-0.009210784314518605
FPVNQLFDML	10	Oxidation (M)	_FPVNQLFDM(Oxidation (M))L_		FPVNQLFDM(1)L		FPVNQLFDM(73)L	0	0	1		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8694458007812	2	620.307549	1238.60055	-0.091923	-5.7021E-05	0.36783	0.00022817	0.27591	0.00017115	620.3078497136911	89.446	0.7308	89.478	89.144	89.874	0.032265					78	27	4	0	0	0	0.052998	1	22161	22161		72.968	53.711	1	964190			4950	3194	3300	3324	6949	6949		210			-0.009210784314518605
FPVNQLFDML	10	Unmodified	_FPVNQLFDML_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3103637695312	2	612.310092	1222.60563	0.37527	0.00022978	0.15732	9.633E-05	0.53259	0.00032611	612.3101426963879	100.36	0.65967	100.4	100.12	100.78	0.042831					91	37	4	0	0	0	0.28859	1	25538	25538		23.79	13.639	1	524740			4951	3194	3300	3325	6950	6950					0.003232254311797078
FPVNQLFDML	10	Unmodified	_FPVNQLFDML_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	612.310092	1222.60563	0.22997	0.00014081	0.08037	4.9211E-05	0.31034	0.00019002	612.3101564219326	100.36	0.645	100.36	100.1	100.74	0	-0.02144	-5.1604E-05	NaN	23.79	106	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386280			4952	3194	3300	3325							0.003232254311797078
FPVPGSGLVL	10	Unmodified	_FPVPGSGLVL_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2896728515625	2	493.289485	984.564418	0.76395	0.00037685	-0.48337	-0.00023844	0.28058	0.00013841	493.28932360130244	84.163	0.34261	84.163	83.9	84.242	0					17	11	2	0	0	0	0.41688	1	20740	20740		10.074	0.6908	1	67365			4953	362	3301	3326	6951	6951					0.07151832453996576
FPVPGSGLVL	10	Unmodified	_FPVPGSGLVL_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2896728515625	2	493.289485	984.564418	0.44371	0.00021888	-0.37559	-0.00018527	0.068127	3.3606E-05	493.2892558512227	84.192	0.45541	84.214	83.866	84.321	0.021744					24	16	2	0	0	0	0.41688	1	20574	20574		10.074	0.6908	1	116060			4954	362	3301	3326	6952	6952					0.07151832453996576
FPVPGSGLVL	10	Unmodified	_FPVPGSGLVL_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.289485	984.564418	0.44371	0.00021888	-0.37559	-0.00018527	0.068127	3.3606E-05	493.2892558512227	84.192	0.45541	84.214	83.866	84.321	0.021744	0.025224	4.0599E-05	NaN	10.074	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116060			4955	362	3301	3326							0.07151832453996576
FPVQQDYF	8	Unmodified	_FPVQQDYF_					0	0	0			REV__ENSG00000244405|ENST00000306376|ETV5	REV__ENSG00000244405|ENST00000306376|ETV5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2457275390625	2	522.245275	1042.476	0.0060455	3.1572E-06	1.4781	0.00077191	1.4841	0.00077507	522.24579201771	72.719	1.0555	72.719	72.228	73.284	0					57	36	2	0	0	0	0.50159	2	17347	17347;17359		12.532	3.1484	1	138470	+		4956	11070	3302	3327	6953;6954	6953					-0.043542078564769326
FPVQQDYF	8	Unmodified	_FPVQQDYF_					0	0	0			REV__ENSG00000244405|ENST00000306376|ETV5	REV__ENSG00000244405|ENST00000306376|ETV5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	522.245275	1042.476	0.071698	3.7444E-05	1.2459	0.00065066	1.3176	0.00068811	522.245757001777	72.757	1.0591	72.813	72.239	73.298	0.055939	0.047034	-0.00011384	NaN	12.532	53	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120860	+		4957	11070	3302	3327							-0.043542078564769326
FPVQSLVQL	9	Unmodified	_FPVQSLVQL_					0	0	0			REV__nc|ENSG00000137948|Q58F21-5|BRDT	REV__nc|ENSG00000137948|Q58F21-5|BRDT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7999267578125	2	515.800217	1029.58588	0.50335	0.00025963	0.44658	0.00023035	0.94994	0.00048998	515.8003034683944	62.908	1.5919	62.908	62.227	63.819	0					155	58	3	0	0	0	0.10543	1	14419	14419		31.268	1.4278	1	1436200	+		4958	9296	3303	3328	6955	6955					0.07227217482704873
FPVRDGKIKL	10	Unmodified	_FPVRDGKIKL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8607788085938	2	586.861141	1171.70773	0.41525	0.00024369	-0.16725	-9.8155E-05	0.24799	0.00014554	586.8608974408802	38.822	0.6891	38.822	38.597	39.286	0					52	26	3	0	0	0	0.33926	2	6920	6920;6967		18.373	5.202	1	93110			4959	1989	3304	3329	6956;6957	6956					0.1287425956509196
FPVRDGKIKL	10	Unmodified	_FPVRDGKIKL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.861328125	2	586.861141	1171.70773	0.65139	0.00038227	-0.16033	-9.4093E-05	0.49105	0.00028818	586.8608429925669	38.667	0.70622	38.754	38.536	39.242	0.08688					55	26	3	0	0	0	0.33926	2	6795	6753;6795		18.373	5.3306	1	126250			4960	1989	3304	3329	6958;6959	6959					0.1287425956509196
FPVRDGVVL	9	Unmodified	_FPVRDGVVL_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000478045.5_1_7:44799906-44801193:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2926330566406	2	501.292559	1000.57057	0.30562	0.0001532	0.012133	6.0823E-06	0.31775	0.00015929	501.2924933690004	56.114	1.7733	56.114	55.635	57.408	0					136	64	3	0	0	0	0.012041	5	12199	12150;12199;12250;12298;12357		63.961	27.833	1	1676100			4961	2184	3305	3330	6960;6961;6962;6963;6964	6961					0.07030350685522535
FPVRDGVVL	9	Unmodified	_FPVRDGVVL_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000478045.5_1_7:44799906-44801193:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2927551269531	2	501.292559	1000.57057	0.24031	0.00012047	0.019296	9.6729E-06	0.25961	0.00013014	501.2925157242647	56.048	1.3905	56.115	55.675	57.066	0.066452					114	51	3	0	0	0	0.012041	5	12054	11954;12003;12054;12102;12161		63.961	27.833	1	1374400			4962	2184	3305	3330	6965;6966;6967;6968;6969	6967					0.07030350685522535
FPVRLSVYL	9	Unmodified	_FPVRLSVYL_					0	0	0		ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3236083984375	2	547.32386	1092.63317	0.038413	2.1024E-05	-0.11519	-6.3044E-05	-0.076772	-4.2019E-05	547.3234710603882	72.751	0.44619	72.751	72.556	73.002	0					24	15	2	0	0	0	0.088609	1	17260	17260		34.932	16.786	1	265460			4963	4124	3306	3331	6970	6970					0.09055496753717307
FPVRLSVYL	9	Unmodified	_FPVRLSVYL_					0	0	0		ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3231811523438	2	547.32386	1092.63317	0.18085	9.8982E-05	-1.2189	-0.00066712	-1.038	-0.00056814	547.3229544805843	72.705	0.41446	72.761	72.566	72.981	0.055939					23	13	2	0	0	0	0.023873	1	17073	17073		55.503	31.482	1	325120			4964	4124	3306	3331	6971	6971					0.09055496753717307
FPVRMDNA	8	Unmodified	_FPVRMDNA_					0	0	0		nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7919006347656	2	475.231645	948.448736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.167	1	92.203	91.703	92.703	0.03653								0	0	0	0.38822	1	23004	23004		10.183	3.8293	1				4965	3889	3307	3332	6972	6972					-0.027550146685030086
FPVRYKGR	8	Unmodified	_FPVRYKGR_					0	0	0			REV__ENST00000588621.5_1_19:45767955-45791108:+|nuORF	REV__ENST00000588621.5_1_19:45767955-45791108:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.79840087890625	2	511.798343	1021.58213	0.28256	0.00014461	0.22189	0.00011356	0.50445	0.00025817	511.7984584712175	106.91	0.68457	106.94	106.63	107.32	0.025711					162	67	3	0	0	0	0.52502	4	27325	27325;27363;27433;27475		9.3474	9.3474	1	366140	+		4966	7950	3308	3333	6973;6974;6975;6976	6973					0.07220592499515988
FPVSDGSNYF	10	Unmodified	_FPVSDGSNYF_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2789916992188	2	566.750921	1131.48729	0.22341	0.00012662	-0.061701	-3.4969E-05	0.16171	9.165E-05	566.7506543947279	68.769	0.55521	68.831	68.587	69.142	0.062126					36	20	2	0	0	0	0.28526	1	15865	15865		27.629	2.2295	1	110530			4967	2238	3309	3334	6977	6977					-0.07319430553002348
FPVSIPAVL	9	Unmodified	_FPVSIPAVL_					0	0	0		ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.78619384765625	2	471.786579	941.558604	0.2748	0.00012965	-0.017146	-8.0891E-06	0.25765	0.00012156	471.78645025084245	88.224	0.63548	88.224	87.948	88.584	0					56	23	3	0	0	0	0.16036	2	21926	21926;21974		23.148	9.6405	1	490200			4968	3456	3310	3335	6978;6979	6978					0.0854873394232527
FPVSIPAVL	9	Unmodified	_FPVSIPAVL_					0	0	0		ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.78662109375	2	471.786579	941.558604	0.064117	3.0249E-05	0.3396	0.00016022	0.40372	0.00019047	471.78663271414547	88.172	0.70608	88.202	87.995	88.701	0.030037					55	27	3	0	0	0	0.11022	2	21809	21762;21809		30.225	12.09	1	482590			4969	3456	3310	3335	6980;6981	6981					0.0854873394232527
FPVTDAVNKG	10	Unmodified	_FPVTDAVNKG_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.277099609375	2	524.277106	1046.53966	0.17758	9.3103E-05	-0.14166	-7.4269E-05	0.035925	1.8835E-05	524.2770133987791	48.535	1.1426	48.535	48.224	49.367	0					85	39	4	0	0	0	0.20801	1	9841	9841		32.786	1.5173	1	692290			4970	4738	3311	3336	6982	6982					0.01825152580613576
FPVTDAVNKG	10	Unmodified	_FPVTDAVNKG_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2781372070312	2	524.277106	1046.53966	0.16111	8.4466E-05	0.25516	0.00013377	0.41627	0.00021824	524.2770900493936	48.434	0.77445	48.514	48.185	48.959	0.080029					73	25	4	0	0	0	0.26541	1	9679	9679		26.268	1.2772	1	569060			4971	4738	3311	3336	6983	6983					0.01825152580613576
FPVTTAVAA	9	Unmodified	_FPVTTAVAA_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-3|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.7442626953125	2	438.744911	875.475269	-0.10787	-4.7329E-05	-0.62258	-0.00027315	-0.73045	-0.00032048	438.74461234501814	44.483	0.60019	44.57	44.363	44.964	0.08754					34	21	3	0	0	0	0.25979	1	8546	8546		11.64	0	1	44327	+		4972	12755	3312	3337	6984	6984					0.032549974944686255
FPVTTAVAA	9	Unmodified	_FPVTTAVAA_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-3|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	438.744911	875.475269	-0.10787	-4.7329E-05	-0.62258	-0.00027315	-0.73045	-0.00032048	438.74461234501814	44.483	0.60019	44.57	44.363	44.964	0.08754	-0.070821	0.00010172	NaN	11.64	34	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44327	+		4973	12755	3312	3337							0.032549974944686255
FPVVEFLTL	9	Unmodified	_FPVVEFLTL_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.8049926757812	2	532.804968	1063.59538	0.41184	0.00021943	0.1088	5.7969E-05	0.52064	0.0002774	532.8048554836313	101.1	0.66275	101.1	100.74	101.4	0					83	37	3	0	0	0	0.028398	3	25869	25827;25869;25909		52.268	25.385	1	218040			4974	4327	3313	3338	6985;6986;6987	6986					0.06612985768242652
FPVVEFLTL	9	Unmodified	_FPVVEFLTL_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8048706054688	2	532.804968	1063.59538	0.61775	0.00032914	-0.091632	-4.8822E-05	0.52612	0.00028032	532.8047430661909	100.97	0.61783	101.02	100.74	101.36	0.042839					74	36	3	0	0	0	0.015682	2	25704	25668;25704		61.357	40.904	1	214280			4975	4327	3313	3338	6988;6989	6989					0.06612985768242652
FPVWFEYP	8	Unmodified	_FPVWFEYP_					0	0	0		nc|ENSG00000132640|Q9Y2F9-2|BTBD3;ENSG00000132640|ENST00000378226|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.759033203125	2	542.760561	1083.50657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.43	1	98.472	97.972	98.972	0.041931								0	0	0	0.38822	1	24914	24914		5.2307	0	1				4976	2586	3314	3339	6990	6990					-0.03184429471434669
FPWDIDEAL	9	Unmodified	_FPWDIDEAL_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.263916015625	2	553.263665	1104.51278	0.6085	0.00033666	-0.19131	-0.00010585	0.41719	0.00023082	553.263352706615	91.942	1.0784	91.942	91.435	92.513	0					110	40	4	0	0	0	0.0043406	2	23097	23097;23147		97.075	53.216	1	1048200			4977	1328	3315	3340	6991;6992	6991					-0.03529956030570247
FPWDIDEAL	9	Unmodified	_FPWDIDEAL_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.263916015625	2	553.263665	1104.51278	0.55621	0.00030773	-0.088876	-4.9172E-05	0.46733	0.00025856	553.2633971802118	91.949	1.0906	91.985	91.411	92.501	0.03653					108	38	4	0	0	0	0.011655	2	22937	22937;22980		64.236	28.109	1	867920			4978	1328	3315	3340	6993;6994	6993					-0.03529956030570247
FPWEQSLAGM	10	Unmodified	_FPWEQSLAGM_					0	0	0			REV__ENST00000514949.1_1_5:122111316-122111454:+|nuORF	REV__ENST00000514949.1_1_5:122111316-122111454:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.272705078125	2	583.270967	1164.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.45	1	99.493	98.993	99.993	0.042839								0	0	0	0.33916	1	25222	25222		1.1933	0	1		+		4979	12277	3316	3341	6995	6995					-0.048302071540774705
FPWGDGNHTL	10	Unmodified	_FPWGDGNHTL_					0	0	0		ENSG00000111775|ENST00000229379|COX6A1	ENSG00000111775|ENST00000229379|COX6A1	ENSG00000111775|ENST00000229379|COX6A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.76611328125	2	572.26453	1142.51451	-0.0014667	-8.3932E-07	0.18616	0.00010653	0.18469	0.00010569	572.2646251715043	59.097	1.1826	59.097	58.445	59.628	0					62	43	2	0	0	0	0.0094986	4	13087	13011;13031;13087;13103		76.825	32.966	1	298350			4980	1725	3317	3342	6996;6997;6998;6999	6998					-0.051049022219331164
FPWGDGNHTL	10	Unmodified	_FPWGDGNHTL_					0	0	0		ENSG00000111775|ENST00000229379|COX6A1	ENSG00000111775|ENST00000229379|COX6A1	ENSG00000111775|ENST00000229379|COX6A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.2642211914062	2	572.26453	1142.51451	0.17547	0.00010042	-0.020342	-1.1641E-05	0.15513	8.8776E-05	572.2645767667866	58.933	1.0373	59.003	58.533	59.571	0.070477					59	38	2	0	0	0	0.057777	3	12894	12854;12894;12944		55.503	23.197	1	259230			4981	1725	3317	3342	7000;7001;7002	7001					-0.051049022219331164
FPWNSHVVL	9	Unmodified	_FPWNSHVVL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.79052734375	2	549.790184	1097.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.924	1	66.924	66.424	67.424	0								0	0	0	0.066177	1	15473	15473		43.772	10.987	1				4982	1364	3318	3343	7003	7003					0.02093466542760325
FPWNSHVVL	9	Unmodified	_FPWNSHVVL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7903442382812	2	549.790184	1097.56581	0.80628	0.00044329	-1.3624	-0.00074902	-0.55609	-0.00030573	549.7899430931079	66.904	0.75444	66.969	66.773	67.527	0.065071					37	25	3	0	0	0	0.15482	1	15319	15319		23.79	2.2528	1	829220			4983	1364	3318	3343	7004	7004					0.02093466542760325
FPWRLPRG	8	Unmodified	_FPWRLPRG_					0	0	0		ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7940673828125	2	514.793061	1027.57157	0.57015	0.00029351	0.11445	5.892E-05	0.6846	0.00035243	514.7931214575616	97.269	0.39919	97.269	97.039	97.438	0					48	17	3	0	0	0	0.52502	1	24679	24679		9.3474	0	1	570690			4984	4460	3319	3344	7005	7005					0.05888609845078463
FPWSGKVKDIL	11	Unmodified	_FPWSGKVKDIL_					0	0	0		RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant;ENSG00000004700|ENST00000444129|RECQL	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	430.5799865722656	3	430.579929	1288.71796	0.21826	9.3977E-05	-0.37247	-0.00016038	-0.15422	-6.6403E-05	430.5796978366884	62.54	0.65279	62.613	62.424	63.076	0.072701					47	23	3	0	0	0	0.27924	1	14009	14009		20.411	20.411	1	280500			4985	336	3320	3345	7006	7006					0.0851482249968285
FPWTCAPLG	9	Unmodified	_FPWTCAPLG_					0	0	0			REV__ENST00000591541.2_1_18:43319470-43329913:+|nuORF	REV__ENST00000591541.2_1_18:43319470-43329913:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2393493652344	2	496.238938	990.463324	0.35589	0.00017661	0.35163	0.00017449	0.70752	0.0003511	496.2390195125379	53.242	0.40424	53.242	53.006	53.41	0					32	16	3	0	0	0	0.28587	1	11330	11330		8.5933	0	1	194980	+		4986	9401	3321	3346	7007	7007					-0.03228942520365763
FPYEYSYGL	9	Unmodified	_FPYEYSYGL_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7589721679688	2	569.758215	1137.50188	0.40425	0.00023032	0.48881	0.0002785	0.89306	0.00050883	569.7587680339772	74.766	0.65855	74.766	74.4	75.058	0					42	24	2	0	0	0	0.083124	1	17868	17868		36.127	17.992	1	249420			4987	4991	3322	3347	7008	7008					-0.06137358404862425
FPYEYSYGL	9	Unmodified	_FPYEYSYGL_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.75927734375	2	569.758215	1137.50188	0.36849	0.00020995	0.10811	6.1595E-05	0.4766	0.00027154	569.7583470717057	74.706	0.72131	74.754	74.369	75.09	0.048546					39	25	2	0	0	0	0.10264	1	17681	17681		36.127	22.221	1	211320			4988	4991	3322	3347	7009	7009					-0.06137358404862425
FPYGLFELV	9	Unmodified	_FPYGLFELV_					0	0	0		ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.789306640625	2	542.789318	1083.56408	0.37089	0.00020131	0.43969	0.00023866	0.81058	0.00043997	543.2911785878429	101.44	0.56037	101.44	101.16	101.72	0					69	34	3	0	0	0	0.25979	2	25946	25946;25999		11.64	4.9171	1	109840			4989	1645;7027	3323	3348	7010;7011	7010					0.0256441273411383
FPYGLFELV	9	Unmodified	_FPYGLFELV_					0	0	0		ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7893676757812	2	542.789318	1083.56408	0.52359	0.0002842	-0.12202	-6.6232E-05	0.40156	0.00021796	542.7891857262438	101.43	0.55463	101.47	101.18	101.73	0.042656					52	34	2	0	0	0	0.29576	2	25780	25780;25841		7.2892	4.7117	1	75857			4990	1645;7027	3323	3348	7012;7013	7012					0.0256441273411383
FPYKDDLLAL	10	Unmodified	_FPYKDDLLAL_					0	0	0		ENSG00000068697|ENST00000175091|LAPTM4A	ENSG00000068697|ENST00000175091|LAPTM4A	ENSG00000068697|ENST00000175091|LAPTM4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8231811523438	2	597.823889	1193.63323	-0.058886	-3.5203E-05	-1.5879	-0.0009493	-1.6468	-0.00098451	597.822759252018	72.575	0.97395	72.575	72.228	73.202	0					69	33	3	0	0	0	0.38376	1	17262	17262		13.615	1.9746	1	450990			4991	734	3324	3349	7014	7014					0.04415451963063788
FPYNWNRN	8	Unmodified	_FPYNWNRN_					0	0	0			REV__ENSG00000183117|ENST00000635120|CSMD1	REV__ENSG00000183117|ENST00000635120|CSMD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3056030273438	2	555.759415	1109.50428	0.663	0.00036847	0.51582	0.00028667	1.1788	0.00065514	556.2611454969192	77.254	0.76339	77.288	76.789	77.553	0.034485					47	32	2	0	0	0	0.33972	1	18434	18434		26.341	0.94196	1	1626900	+		4992	10588	3325	3350	7015	7015					-0.04609465156522674
FPYPLQWSL	9	Unmodified	_FPYPLQWSL_					0	0	0		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8004760742188	2	575.800217	1149.58588	0.38058	0.00021914	0.66118	0.00038071	1.0418	0.00059984	575.8003911619996	94.463	0.74676	94.463	94.172	94.919	0					74	31	3	0	0	0	0.048027	2	23865	23865;23921		43.772	22.235	1	456370			4993	5667	3326	3351	7016;7017	7016					0.01707217482703527
FPYPLQWSL	9	Unmodified	_FPYPLQWSL_					0	0	0		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8004760742188	2	575.800217	1149.58588	0.31967	0.00018407	0.7207	0.00041498	1.0404	0.00059905	575.8003156034164	94.457	0.68317	94.495	94.227	94.91	0.038094					65	27	3	0	0	0	0.029291	1	23693	23693		51.63	19.324	1	331890			4994	5667	3326	3351	7018	7018					0.01707217482703527
FPYPSLADIAL	11	Unmodified	_FPYPSLADIAL_					0	0	0		nc|ENSG00000290292|Q8IX15|HOMEZ;nc|ENSG00000290292|Q8IX15-3|HOMEZ	nc|ENSG00000290292|Q8IX15|HOMEZ	nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.8244018554688	2	603.823889	1205.63323	0.44408	0.00026815	0.20422	0.00012331	0.6483	0.00039146	603.8239987242849	95.578	0.43472	95.578	95.491	95.925	0					41	20	3	0	0	0	0.31637	1	24243	24243		16.149	6.766	1	513690			4995	7636	3327	3352	7019	7019					0.03863451963025
FPYPSLADIAL	11	Unmodified	_FPYPSLADIAL_					0	0	0		nc|ENSG00000290292|Q8IX15|HOMEZ;nc|ENSG00000290292|Q8IX15-3|HOMEZ	nc|ENSG00000290292|Q8IX15|HOMEZ	nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	603.823889	1205.63323	0.50084	0.00030242	0.085515	5.1636E-05	0.58635	0.00035405	603.8239192624306	95.528	0.53769	95.566	95.386	95.924	0.038872	-0.0057164	-6.2644E-05	NaN	16.149	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333050			4996	7636	3327	3352							0.03863451963025
FPYPYAERL	9	Unmodified	_FPYPYAERL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2957153320312	2	578.295299	1154.57605	-0.0007514	-4.3453E-07	0.38613	0.0002233	0.38538	0.00022286	578.2954377311528	58.8	0.93872	58.8	58.542	59.481	0					55	34	2	0	0	0	0.064247	2	12972	12972;13023		40.239	25.658	1	228900			4997	1472	3328	3353	7020;7021	7020					0.004940294773177811
FPYPYAERL	9	Unmodified	_FPYPYAERL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2952880859375	2	578.295299	1154.57605	0.29635	0.00017138	-1.4398	-0.00083264	-1.1435	-0.00066126	578.2952660587558	58.676	0.89492	58.746	58.505	59.4	0.070477					62	33	4	0	0	0	0.11198	2	12853	12805;12853		29.841	15.002	1	350510			4998	1472	3328	3353	7022;7023	7023					0.004940294773177811
FPYQHRNY	8	Unmodified	_FPYQHRNY_					0	0	0			REV__ENST00000486256.5_1_7:6774947-6777299:+|nuORF	REV__ENST00000486256.5_1_7:6774947-6777299:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.76708984375	2	562.76724	1123.51993	0.4525	0.00025465	0.12493	7.0308E-05	0.57743	0.00032496	563.2687648677753	81.73	0.74796	81.752	81.523	82.271	0.021866					40	26	2	0	0	0	0.45077	1	19825	19825		19.439	0	1	153300	+		4999	8916	3329	3354	7024	7024					-0.03689178639478996
FPYSYEVAL	9	Unmodified	_FPYSYEVAL_					0	0	0		nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENSG00000075420|ENST00000415807|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7689208984375	2	544.768583	1087.52261	0.32947	0.00017948	0.3054	0.00016637	0.63487	0.00034586	544.7686725592629	77.141	1.8644	77.141	76.615	78.479	0					173	71	4	0	0	0	0.0076571	5	18607	18520;18562;18607;18644;18685		74.423	45.936	1	4454600			5000	822	3330	3355	7025;7026;7027;7028;7029	7027					-0.01764768025191188
FPYSYEVAL	9	Unmodified	_FPYSYEVAL_					0	0	0		nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENSG00000075420|ENST00000415807|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7688598632812	2	544.768583	1087.52261	0.42886	0.00023363	0.2612	0.00014229	0.69005	0.00037592	544.7685783939389	77.206	1.687	77.241	76.603	78.29	0.034485					164	64	4	0	0	0	0.0076571	6	18440	18347;18390;18440;18478;18527;18580		74.423	45.936	1	4030700			5001	822	3330	3355	7030;7031;7032;7033;7034;7035	7032					-0.01764768025191188
FPYVRDFVM	9	Oxidation (M)	_FPYVRDFVM(Oxidation (M))_		FPYVRDFVM(1)		FPYVRDFVM(62)	0	0	1		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2891235351562	2	595.289159	1188.56377	0.41117	0.00024476	-0.033292	-1.9819E-05	0.37787	0.00022494	595.2891081019295	63.43	0.83125	63.43	63.089	63.92	0					72	29	3	0	0	0	0.015341	1	14442	14442		61.602	61.602	1	705660			5002	3892	3331	3356	7036	7036		242			-0.022973302573973342
FPYVRDFVM	9	Oxidation (M)	_FPYVRDFVM(Oxidation (M))_		FPYVRDFVM(1)		FPYVRDFVM(70)	0	0	1		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2892456054688	2	595.289159	1188.56377	0.50484	0.00030053	-0.10357	-6.1657E-05	0.40127	0.00023887	595.2890234619528	64.719	1.7681	64.719	64.054	65.822	0					148	63	3	0	0	0	0.0089808	2	14859	14859;14914		70.332	56.426	1	754300			5003	3892	3331	3356	7037;7038	7037		242			-0.022973302573973342
FPYVRDFVM	9	Oxidation (M)	_FPYVRDFVM(Oxidation (M))_		FPYVRDFVM(1)		FPYVRDFVM(70)	0	0	1		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2894287109375	2	595.289159	1188.56377	0.28212	0.00016794	0.36615	0.00021796	0.64827	0.00038591	595.289313664418	63.344	0.76121	63.415	63.097	63.859	0.071014					69	29	3	0	0	0	0.0089808	1	14265	14265		70.332	49.878	1	644620			5004	3892	3331	3356	7039	7039		242			-0.022973302573973342
FPYVRDFVM	9	Oxidation (M)	_FPYVRDFVM(Oxidation (M))_		FPYVRDFVM(1)		FPYVRDFVM(53)	0	0	1		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2891845703125	2	595.289159	1188.56377	0.31112	0.00018521	0.1196	7.1196E-05	0.43072	0.0002564	595.2891030493023	64.692	1.7084	64.761	64.141	65.849	0.068916					148	64	3	0	0	0	0.026809	2	14711	14711;14769		53.404	43.33	1	643800			5005	3892	3331	3356	7040;7041	7040		242			-0.022973302573973342
FPYVYHFTL	9	Unmodified	_FPYVYHFTL_					0	0	0			REV__nc|ENSG00000116885|Q8WVF1-4|OSCP1	REV__nc|ENSG00000116885|Q8WVF1-4|OSCP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.28955078125	2	593.800217	1185.58588	0.38451	0.00022832	-2.1647	-0.0012854	-1.7802	-0.0010571	593.7981409259212	64.551	0.73227	64.62	64.455	65.188	0.068916					75	27	4	0	0	0	0.23437	1	14619	14619		14.582	3.7578	1	451940	+		5006	12778	3332	3357	7042	7042					0.0005121748270084936
FQAPSHVTL	9	Unmodified	_FQAPSHVTL_					0	0	0		ENST00000500447.1_1_11:566062-566293:-|nuORF	ENST00000500447.1_1_11:566062-566293:-|nuORF	ENST00000500447.1_1_11:566062-566293:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.266845703125	2	500.266542	998.51853	0.2907	0.00014543	-0.0023875	-1.1944E-06	0.28831	0.00014423	500.2664464554471	51.671	0.46899	51.741	51.531	52	0.069874					26	16	2	0	0	0	0.30757	1	10713	10713		5.7319	0	1	121010			5007	6860	3333	3358	7043	7043					0.01921187271761937
FQAPSHVTL	9	Unmodified	_FQAPSHVTL_					0	0	0		ENST00000500447.1_1_11:566062-566293:-|nuORF	ENST00000500447.1_1_11:566062-566293:-|nuORF	ENST00000500447.1_1_11:566062-566293:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	500.266542	998.51853	0.18928	9.469E-05	-0.18967	-9.4888E-05	-0.00039585	-1.9803E-07	500.266485765173	51.718	0.43238	51.718	51.529	51.961	0	-0.011689	-6.8202E-05	NaN	5.7319	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139690			5008	6860	3333	3358							0.01921187271761937
FQDKYLHNN	9	Unmodified	_FQDKYLHNN_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.318115234375	2	589.783087	1177.55162	0.82792	0.00048829	-4.0772	-0.0024047	-3.2493	-0.0019164	589.7811167284888	81.926	0.29242	81.926	81.716	82.008	0					13	9	2	0	0	0	0.24791	1	20022	20022		10.074	2.1638	1	64513	+		5009	10965	3334	3359	7044	7044					-0.030052306761717773
FQDKYLHNN	9	Unmodified	_FQDKYLHNN_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	589.783087	1177.55162	0.54295	0.00032022	-4.6264	-0.0027286	-4.0834	-0.0024083	590.2814963746753	81.984	0.27733	82.006	81.792	82.069	0.021866	0.039949	-0.00014211	NaN	10.074	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97500	+		5010	10965	3334	3359							-0.030052306761717773
FQDVLLYF	8	Unmodified	_FQDVLLYF_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.773681640625	2	522.773668	1043.53278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.753	1	60.826	60.326	61.326	0.073421								0	0	0	0.385	1	13450	13450		19.439	0.18201	1				5011	2988	3335	3360	7045	7045					0.012758397000425248
FQECERMNIL	10	Unmodified	_FQECERMNIL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	ENSG00000187775|ENST00000389840|DNAH17;DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3172607421875	2	641.799565	1281.58458	0.33514	0.00021509	0.29433	0.0001889	0.62947	0.00040399	641.7994935223032	68.341	0.50281	68.405	68.192	68.694	0.063507					31	18	2	0	0	0	0.45945	1	15789	15789		2.9952	0.71247	1	106880			5012	5131;283	3336	3361	7046	7046					-0.044951079399879745
FQECLCGAVWS	11	Unmodified	_FQECLCGAVWS_					0	0	0		ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7672119140625	2	621.767734	1241.52091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.998	1	93.998	93.498	94.498	0								0	0	0	0.33436	1	23719	23719		2.7352	0.23671	1				5013	5791	3337	3362	7047	7047					-0.09018468377098543
FQELQRNP	8	Unmodified	_FQELQRNP_					0	0	0		ENST00000580356.5_1_17:8159124-8159921:+|nuORF;ENSG00000178921|ENST00000314666|PFAS	ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENST00000580356.5_1_17:8159124-8159921:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7896728515625	2	516.267073	1030.51959	0.31719	0.00016375	1.385	0.00071506	1.7022	0.00087881	516.2675600234086	50.576	0.41273	50.649	50.444	50.857	0.07312					28	14	3	0	0	0	0.35759	1	10370	10370		12.532	1.7076	1	135200			5014	4757	3338	3363	7048	7048					0.005554016406676965
FQEPSRSAVWG	11	Unmodified	_FQEPSRSAVWG_					0	0	0		ENST00000324262.8_1_18:72163648-72167242:+|nuORF	ENST00000324262.8_1_18:72163648-72167242:+|nuORF	ENST00000324262.8_1_18:72163648-72167242:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.775390625	2	632.309469	1262.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.955	1	81.977	81.477	82.477	0.021866								0	0	0	0.32927	1	19896	19896		4.5289	0.58447	1				5015	6040	3339	3364	7049	7049					-0.01641272613392175
FQFFFIRI	8	Unmodified	_FQFFFIRI_					0	0	0			REV__ENST00000342374.4_1_20:43127230-43127344:-|nuORF	REV__ENST00000342374.4_1_20:43127230-43127344:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3103637695312	2	559.313295	1116.61204	0.14601	8.1663E-05	-3.9813	-0.0022268	-3.8353	-0.0021451	559.3111029670123	72.074	0.48308	72.074	71.834	72.317	0					30	16	3	0	0	0	0.50159	1	17030	17030		12.532	0.29089	1	179430	+		5016	11466	3340	3365	7050	7050					0.058395314448489444
FQFNCWTDR	9	Unmodified	_FQFNCWTDR_					0	0	0			REV__nc|ENSG00000243414|Q86XR7-2|TICAM2	REV__nc|ENSG00000243414|Q86XR7-2|TICAM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.7636108398438	2	608.76384	1215.51313	0.54127	0.0003295	-0.76527	-0.00046587	-0.22401	-0.00013637	608.7632332244315	75.376	0.4127	75.376	75.199	75.611	0					45	15	4	0	0	0	0.30005	1	18076	18076		6.7232	2.3939	1	976700	+		5017	12900	3341	3366	7051	7051					-0.08600859582384146
FQFPSFFY	8	Unmodified	_FQFPSFFY_					0	0	0		ENST00000562210.1_1_16:71512659-71516017:-|nuORF	ENST00000562210.1_1_16:71512659-71516017:-|nuORF	ENST00000562210.1_1_16:71512659-71516017:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7530517578125	2	541.752736	1081.49092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.55	1	32.624	32.124	33.124	0.07378								0	0	0	0.38822	1	4933	4933		0.79363	0	1				5018	7161	3342	3367	7052	7052					-0.0465671598847166
FQHRPPGP	8	Unmodified	_FQHRPPGP_					0	0	0		ENSG00000156873|ENST00000563588|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.7127685546875	2	468.245944	934.477334	-0.28924	-0.00013544	1.3714	0.00064215	1.0822	0.00050672	468.2465477048851	32.151	1.3497	32.225	31.715	33.065	0.073784					88	65	2	0	0	0	0.3576	1	4958	4958		2.5775	0.27475	1	51049			5019	3639	3343	3368	7053	7053					0.007474710229530501
FQHSERIYF	9	Unmodified	_FQHSERIYF_					0	0	0		nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11;ENSG00000019485|ENST00000683152|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.536376953125	3	409.536612	1225.58801	0.081327	3.3307E-05	-0.31431	-0.00012872	-0.23299	-9.5417E-05	409.53640627499755	31.151	1.7487	31.151	30.909	32.658	0					162	78	3	0	0	0	0.29718	1	4792	4792		7.1017	0.90987	1	99718			5020	470	3344	3369	7054	7054					-0.015763537794782678
FQHSERIYF	9	Unmodified	_FQHSERIYF_					0	0	0		nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11;ENSG00000019485|ENST00000683152|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.53662109375	3	409.536612	1225.58801	-0.26602	-0.00010895	-0.076334	-3.1262E-05	-0.34236	-0.00014021	409.5365393170625	30.971	1.4531	31.044	30.77	32.223	0.073782					193	70	4	0	0	0	0.31389	1	4718	4718		4.897	1.8247	1	365960			5021	470	3344	3369	7055	7055					-0.015763537794782678
FQIINKDEME	10	Unmodified	_FQIINKDEME_					0	0	0			REV__nc|ENSG00000120217|Q9NZQ7-3|CD274	REV__nc|ENSG00000120217|Q9NZQ7-3|CD274	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3079223632812	2	633.805371	1265.59619	0.39051	0.00024751	0.042245	2.6775E-05	0.43275	0.00027428	633.8052335989621	55.294	1.2667	55.294	54.768	56.035	0					120	45	4	0	0	0	0.46746	1	11792	11792		1.4819	0	1	791250	+		5022	8872	3345	3370	7056	7056					-0.025985876450477008
FQLFAKPIL	9	Unmodified	_FQLFAKPIL_					0	0	0			REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|27|3|anti-sense	REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|27|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.8289794921875	2	538.828778	1075.643	0.34084	0.00018365	0.14272	7.6899E-05	0.48355	0.00026055	538.8287604456298	79.006	0.8982	79.006	78.754	79.652	0					92	30	5	0	0	0	0.29576	1	19224	19224		7.2892	0	1	1951300	+		5023	12949	3346	3371	7057	7057					0.10820684759096366
FQLFAKPIL	9	Unmodified	_FQLFAKPIL_					0	0	0			REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|27|3|anti-sense	REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|27|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.8291015625	2	538.828778	1075.643	0.4647	0.0002504	-0.064543	-3.4777E-05	0.40016	0.00021562	538.8286884095743	78.946	1.1169	78.976	78.738	79.855	0.030151					96	39	4	0	0	0	0.21398	1	18957	18957		16.942	0	1	2165000	+		5024	12949	3346	3371	7058	7058					0.10820684759096366
FQLFVYEQF	9	Unmodified	_FQLFVYEQF_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.53759765625	3	407.53773	1219.59136	0.54752	0.00022314	-0.46779	-0.00019064	0.079736	3.2495E-05	407.5375029169886	59.792	0.52348	59.792	59.628	60.152	0					48	19	3	0	0	0	0.27266	1	13288	13288		10.151	1.1743	1	289360	+		5025	10630	3347	3372	7059	7059					-0.009651037255025585
FQLFVYEQF	9	Unmodified	_FQLFVYEQF_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5377502441406	3	407.53773	1219.59136	-0.0090762	-3.6989E-06	0.082853	3.3766E-05	0.073777	3.0067E-05	407.53773963951284	59.643	1.0022	59.716	59.33	60.332	0.072338					51	27	3	0	0	0	0.2359	1	13132	13132		14.405	5.4291	1	246920	+		5026	10630	3347	3372	7060	7060					-0.009651037255025585
FQLYFHSFI	9	Unmodified	_FQLYFHSFI_					0	0	0		nc|ENSG00000158488|P15812-7|CD1E;nc|ENSG00000158488|P15812-6|CD1E;nc|ENSG00000158488|P15812-3|CD1E;nc|ENSG00000158488|P15812-5|CD1E;nc|ENSG00000158488|P15812-4|CD1E;nc|ENSG00000158488|P15812-2|CD1E;ENSG00000158488|ENST00000368167|CD1E	nc|ENSG00000158488|P15812-7|CD1E	nc|ENSG00000158488|P15812-7|CD1E	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2747802734375	2	601.305667	1200.59678	0.49131	0.00029542	2.7236	0.0016377	3.2149	0.0019331	601.8082190301194	76.942	0.1965	76.981	76.825	77.022	0.03923					9	6	2	0	0	0	0.2298	1	18380	18380		16.942	9.0321	1	95577			5027	3696	3348	3373	7061	7061					0.0045061985699703655
FQMKYPFEI	9	Unmodified	_FQMKYPFEI_					0	0	0		nc|ENSG00000158485|P29016-2|CD1B;ENSG00000158485|ENST00000368168|CD1B	nc|ENSG00000158485|P29016-2|CD1B	nc|ENSG00000158485|P29016-2|CD1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.779296875	2	601.79936	1201.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.67	1	47.67	47.17	48.17	0								0	0	0	0.27613	1	9609	9609		3.9444	0	1				5028	3695	3349	3374	7062	7062					-0.008561595975606906
FQNIRRLEI	9	Unmodified	_FQNIRRLEI_					0	0	0			REV__ENST00000376022.5_1_13:103420660-103421695:-|nuORF	REV__ENST00000376022.5_1_13:103420660-103421695:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.7900390625	2	594.846022	1187.67749	0.16317	9.7059E-05	0.30173	0.00017948	0.46489	0.00027654	594.8459407989365	46.81	0.47442	46.893	46.725	47.199	0.083096					35	18	3	0	0	0	0.259	1	9282	9282		1.6526	0	1	145430	+		5029	11640	3350	3375	7063	7063					0.09115900899905682
FQQLWGYLL	9	Unmodified	_FQQLWGYLL_					0	0	0		ENSG00000182472|ENST00000328867|CAPN12	ENSG00000182472|ENST00000328867|CAPN12	ENSG00000182472|ENST00000328867|CAPN12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.754638671875	2	584.313492	1166.61243	0.75145	0.00043908	0.47486	0.00027747	1.2263	0.00071655	584.3131155356547	78.419	0.81619	78.449	77.971	78.787	0.030159					42	28	2	0	0	0	0.2298	1	18773	18773		16.942	0	1	182240			5030	4876	3351	3376	7064	7064					0.03578906374059443
FQSLFSLLEE	10	Unmodified	_FQSLFSLLEE_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.8973083496094	3	404.876411	1211.6074	-0.0034375	-1.3918E-06	0.78018	0.00031588	0.77675	0.00031449	404.8766241663391	58.615	0.43948	58.686	58.505	58.945	0.070477					18	14	2	0	0	0	0.3181	1	12820	12820		3.5871	0.5148	1	53363			5031	1458	3352	3377	7065	7065					0.010065577207797105
FQSQGRALERY	11	Unmodified	_FQSQGRALERY_					0	0	0			REV__ENSG00000124772|ENST00000244751|CPNE5	REV__ENSG00000124772|ENST00000244751|CPNE5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8697814941406	3	452.233592	1353.67895	-0.013917	-6.2938E-06	3.4986	0.0015822	3.4846	0.0015759	452.23453723483755	29.288	0.35606	29.288	29.132	29.488	0					27	22	2	0	0	0	0.31096	1	4108	4108		1.4551	0.24029	1	14814	+		5032	8961	3353	3378	7066	7066					0.016254901979891656
FQSRQDVL	8	Unmodified	_FQSRQDVL_					0	0	0		ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.76104736328125	2	496.761623	991.508694	-0.10623	-5.277E-05	-0.14283	-7.0952E-05	-0.24906	-0.00012372	496.76143972818306	45.213	0.47951	45.213	45.024	45.503	0					37	16	3	0	0	0	0.53202	1	8850	8850		6.7232	0.96273	1	86881			5033	4512	3354	3379	7067	7067					0.012599992663922421
FQSRQDVL	8	Unmodified	_FQSRQDVL_					0	0	0		ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	496.761623	991.508694	-0.10623	-5.277E-05	-0.14283	-7.0952E-05	-0.24906	-0.00012372	496.76143972818306	45.213	0.47951	45.213	45.024	45.503	0	0.0033731	4.3124E-05	NaN	6.7232	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86881			5034	4512	3354	3379							0.012599992663922421
FQSRQDVL	8	Unmodified	_FQSRQDVL_					0	0	0		ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	496.761623	991.508694	0.12837	6.3768E-05	-0.29218	-0.00014515	-0.16381	-8.1377E-05	496.76131817372084	45.118	0.59252	45.206	44.988	45.581	0.08754	-0.0033731	-0.00010526	NaN	6.7232	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76629			5035	4512	3354	3379							0.012599992663922421
FQTNFRNS	8	Unmodified	_FQTNFRNS_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7420349121094	2	507.243598	1012.47264	-0.11884	-6.0283E-05	-0.20179	-0.00010235	-0.32063	-0.00016264	507.24353879310746	33.465	0.29779	33.465	33.303	33.601	0					18	10	2	0	0	0	0.3576	1	5325	5325		4.3292	1.7518	1	40714			5036	3005	3355	3380	7068	7068					-0.033094579104840705
FQVAIFAGWDG	11	Unmodified	_FQVAIFAGWDG_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1882629394531	3	404.201229	1209.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.626	1	77.626	77.126	78.126	0								0	0	0	0.32216	1	18740	18740		7.0371	1.6344	1				5037	2799	3356	3381	7069	7069					-0.014548720110042268
FQVKLLYRMR	10	Unmodified	_FQVKLLYRMR_					0	0	0			REV__ENSG00000129484|ENST00000429687|PARP2	REV__ENSG00000129484|ENST00000429687|PARP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.9326171875	3	451.932309	1352.7751	0.68319	0.00030876	0.21646	9.7827E-05	0.89966	0.00040658	451.93230680483066	92.433	1.62	92.433	91.815	93.435	0					189	61	4	0	0	0	0.46608	2	23193	23193;23481		1.7423	0.96546	1	468520	+		5038	9035	3357	3382	7070;7071	7070					0.112819665043844
FQVKLLYRMR	10	Unmodified	_FQVKLLYRMR_					0	0	0			REV__ENSG00000129484|ENST00000429687|PARP2	REV__ENSG00000129484|ENST00000429687|PARP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.9326171875	3	451.932309	1352.7751	0.52412	0.00023687	0.39452	0.00017829	0.91864	0.00041516	451.9323711189816	94.151	2.1279	94.151	93.339	95.467	0					292	94	4	0	0	0	0.45773	5	23802	23526;23802;23982;24024;24118		3.3196	1.7423	1	1370700	+		5039	9035	3357	3382	7072;7073;7074;7075;7076	7073					0.112819665043844
FQVRIEAF	8	Unmodified	_FQVRIEAF_					0	0	0			REV__ENST00000497170.5_1_13:101795259-101997694:-|nuORF	REV__ENST00000497170.5_1_13:101795259-101997694:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.27642822265625	2	505.276909	1008.53927	0.22046	0.00011139	-0.17786	-8.9869E-05	0.042601	2.1525E-05	505.27703590395356	50.581	3.0551	50.654	50.385	53.44	0.07312					286	121	5	0	0	0	0.50815	1	10969	10969		11.64	1.5664	1	11278000	+		5040	8452	3358	3383	7077	7077					0.035337776514325014
FQYQTHDL	8	Unmodified	_FQYQTHDL_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2445068359375	2	526.245806	1050.47706	0.058832	3.096E-05	-0.9654	-0.00050804	-0.90657	-0.00047708	526.2452533554488	18.556	0.25029	18.645	18.53	18.781	0.089705					47	29	2	0	0	0	0.54097	3	1059	1059;1061;1092		0.69038	0.088878	1	21173	+		5041	8219	3359	3384	7078;7079;7080	7078					-0.04615993487573178
FRALLFLHE	9	Unmodified	_FRALLFLHE_					0	0	0			REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF	REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3267822265625	2	573.326934	1144.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.59	1	109.59	109.09	110.09	0								0	0	0	0.28631	1	28198	28198		1.8442	0	1		+		5042	11663	3360	3385	7081	7081					0.07278014985217851
FRCDHCCL	8	Unmodified	_FRCDHCCL_					0	0	0			REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.6964416503906	2	498.696057	995.377562	0.23544	0.00011741	0.088556	4.4162E-05	0.324	0.00016158	498.69602091179075	59.77	0.35836	59.843	59.735	60.093	0.072338					18	13	2	0	0	0	0.53858	1	13165	13165		2.3027	0.24298	1	95858	+		5043	9169	3361	3386	7082	7082					-0.12031173969182873
FRCFCPVF	8	Unmodified	_FRCFCPVF_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.23614501953125	2	509.735509	1017.45646	0.31584	0.00016099	1.0444	0.00053237	1.3602	0.00069337	509.73598636153116	94.761	0.70783	94.761	94.545	95.253	0					49	29	3	0	0	0	0.3576	1	24097	24097		0.79363	0	1	244540			5044	4600	3362	3387	7083	7083					-0.05156578672585965
FRCLYHRN	8	Unmodified	_FRCLYHRN_					0	0	0			REV__ENST00000377403.6_1_1:9330292-9330553:+|nuORF	REV__ENST00000377403.6_1_1:9330292-9330553:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7789916992188	2	554.777085	1107.53962	-0.19607	-0.00010878	2.5527	0.0014162	2.3566	0.0013074	554.7784756490171	18.79	0.22452	18.79	18.735	18.959	0					34	25	2	0	0	0	0.54097	1	1242	1242		0.69038	0.16561	1	24969	+		5045	11649	3363	3388	7084	7084					-0.009851259003653468
FRCPYYFI	8	Unmodified	_FRCPYYFI_					0	0	0		ENST00000505513.1_1_4:25146420-25156786:-|nuORF	ENST00000505513.1_1_4:25146420-25156786:-|nuORF	ENST00000505513.1_1_4:25146420-25156786:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7853393554688	2	554.767863	1107.52117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.728	1	30.803	30.303	31.303	0.075403								0	0	0	0.38822	1	4390	4390		0.79363	0.10326	1				5046	6887	3364	3389	7085	7085					-0.02828680594961952
FRDFWEQKF	9	Unmodified	_FRDFWEQKF_					0	0	0		nc|ENSG00000198822|Q14832-2|GRM3;ENSG00000198822|ENST00000361669|GRM3	nc|ENSG00000198822|Q14832-2|GRM3	nc|ENSG00000198822|Q14832-2|GRM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8821716308594	3	434.880379	1301.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.621	1	45.621	45.121	46.121	0								0	0	0	0.29058	1	8990	8990		0.96228	0.18574	1				5047	5412	3365	3390	7086	7086					-0.0194378074540964
FRDHDRRF	8	Unmodified	_FRDHDRRF_					0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.790283203125	2	574.789038	1147.56352	0.22724	0.00013062	2.6853	0.0015435	2.9125	0.0016741	574.7902482937436	102.98	0.64465	102.98	102.57	103.21	0					56	41	2	0	0	0	0.3576	1	26438	26438		4.3292	1.0479	1	70117	+		5048	8911	3366	3391	7087	7087					-0.004355691423370445
FRELWRYHF	9	Unmodified	_FRELWRYHF_					0	0	0		ENSG00000128607|ENST00000335420|KLHDC10;ENST00000495724.1_1_7:129756322-129757411:+|nuORF	ENSG00000128607|ENST00000335420|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.8995361328125	3	451.899885	1352.67783	0.32706	0.0001478	-0.60084	-0.00027152	-0.27379	-0.00012372	451.8994931606398	47.294	0.82982	47.377	47.151	47.981	0.083092					66	32	4	0	0	0	0.28919	1	9431	9431		8.1555	1.9637	1	196130			5049	2404	3367	3392	7088	7088					0.015593206197308973
FRFHVELA	8	Unmodified	_FRFHVELA_					0	0	0		nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.28460693359375	2	509.777077	1017.5396	0.29998	0.00015292	-1.0065	-0.00051308	-0.7065	-0.00036016	509.77647580290227	76.939	0.529	76.939	76.615	77.144	0					42	18	3	0	0	0	0.35759	1	18431	18431		13.508	4.1604	1	320630			5050	1469	3368	3393	7089	7089					0.031531973712844774
FRGKVSGPYYP	11	Unmodified	_FRGKVSGPYYP_					0	0	0			REV__nc|ENSG00000211942|P01766|IGHV3-13	REV__nc|ENSG00000211942|P01766|IGHV3-13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.8187255859375	2	635.83258	1269.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.556	1	80.556	80.056	81.056	0								0	0	0	0.33281	1	19633	19633		3.2813	1.4371	1		+		5051	12883	3369	3394	7090	7090					0.02656792288712495
FRGMVLLLL	9	Unmodified	_FRGMVLLLL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.31982421875	2	531.33063	1060.64671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.83	1	100.88	100.38	101.38	0.042839								0	0	0	0.23884	1	25645	25645		11.64	1.5664	1				5052	5128	3370	3395	7091	7091					0.11881031261304997
FRGRNFLL	8	Unmodified	_FRGRNFLL_					0	0	0		ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7987365722656	2	511.798343	1021.58213	-0.046232	-2.3662E-05	0.45451	0.00023262	0.40828	0.00020896	511.7986190327075	107.17	0.26543	107.17	107.06	107.33	0					41	22	2	0	0	0	0.52924	2	27661	27661;27699		8.5933	0	1	228650			5053	6918	3371	3396	7092;7093	7092					0.07220592499515988
FRGRNFLL	8	Unmodified	_FRGRNFLL_					0	0	0		ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	511.798343	1021.58213	-0.046232	-2.3662E-05	0.45451	0.00023262	0.40828	0.00020896	511.7986190327075	107.17	0.26543	107.17	107.06	107.33	0	-0.10029	4.0417E-05	NaN	8.5933	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228650			5054	6918	3371	3396							0.07220592499515988
FRGRNFLL	8	Unmodified	_FRGRNFLL_					0	0	0		ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	511.798343	1021.58213	0.2799	0.00014325	0.13443	6.8803E-05	0.41433	0.00021205	511.79825051338895	107.34	0.078033	107.37	107.32	107.4	0.025711	0.10029	-0.00028721	NaN	8.5933	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47602			5055	6918	3371	3396							0.07220592499515988
FRKDDYTYS	9	Unmodified	_FRKDDYTYS_					0	0	0		tr|U7T2S0|U7T2S0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00438PE=4SV=1	tr|U7T2S0|U7T2S0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00438PE=4SV=1	tr|U7T2S0|U7T2S0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00438PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7745971679688	2	597.774928	1193.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.953	1	45.041	44.541	45.541	0.08754								0	0	0	0.2927	1	8660	8660		0.52476	0	1				5056	13694	3372	3397	7094	7094					-0.053723566329381356
FRKHKAFKE	9	Unmodified	_FRKHKAFKE_					0	0	0			REV__nc|ENSG00000165521|Q05BV3|EML5	REV__nc|ENSG00000165521|Q05BV3|EML5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.29931640625	2	595.843282	1189.67201	0.17105	0.00010192	4.0545	0.0024158	4.2255	0.0025177	595.8452679568961	102.67	0.10224	102.67	102.6	102.71	0					6	5	2	0	0	0	0.259	1	26359	26359		1.6526	0	1	33367	+		5057	10040	3373	3398	7095	7095					0.08476222108083675
FRKHKAFKE	9	Unmodified	_FRKHKAFKE_					0	0	0			REV__nc|ENSG00000165521|Q05BV3|EML5	REV__nc|ENSG00000165521|Q05BV3|EML5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	595.843282	1189.67201	0.24764	0.00014756	3.1079	0.0018518	3.3555	0.0019994	595.8449315178599	102.64	0.093597	102.68	102.64	102.74	0.040916	0.0060522	-0.00051816	NaN	1.6526	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25561	+		5058	10040	3373	3398							0.08476222108083675
FRKLLCRFLN	10	Unmodified	_FRKLLCRFLN_					0	0	0		ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.25732421875	3	437.256904	1308.74888	0.50799	0.00022212	0.60311	0.00026371	1.1111	0.00048583	437.2571721032109	91.052	1.5415	91.052	90.495	92.037	0					125	56	3	0	0	0	0.47161	1	22915	22915		0.69767	0.19171	1	367590			5059	6066	3374	3399	7096	7096					0.10685697332928612
FRKLLCRFLN	10	Unmodified	_FRKLLCRFLN_					0	0	0		ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2572937011719	3	437.256904	1308.74888	0.57742	0.00025248	0.94897	0.00041494	1.5264	0.00066742	437.2573825418961	93.995	1.1331	93.995	93.941	95.074	0					78	52	2	0	0	0	0.47161	1	23746	23746		0.69767	0.07084	1	270890			5060	6066	3374	3399	7097	7097					0.10685697332928612
FRKLLCRFLN	10	Unmodified	_FRKLLCRFLN_					0	0	0		ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2574768066406	3	437.256904	1308.74888	-0.081954	-3.5835E-05	1.2069	0.00052771	1.1249	0.00049187	437.257423440569	90.077	0.54422	90.111	90.035	90.58	0.034065					39	22	2	0	0	0	0.47161	2	22379	22379;22423		0.69767	0.19171	1	719580			5061	6066	3374	3399	7098;7099	7098					0.10685697332928612
FRKLLCRFLN	10	Unmodified	_FRKLLCRFLN_					0	0	0		ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2577209472656	3	437.256904	1308.74888	0.24424	0.0001068	1.2995	0.00056823	1.5438	0.00067503	437.5916848010136	93.943	0.79483	93.981	93.793	94.588	0.038086					62	37	2	0	0	0	0.47119	1	23710	23710		0.77653	0.078866	1	366450			5062	6066	3374	3399	7100	7100					0.10685697332928612
FRKLNTKLM	9	Unmodified	_FRKLNTKLM_					0	0	0		ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8429565429688	2	575.841894	1149.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.7	1	87.7	87.2	88.2	0								0	0	0	0.24643	1	21810	21810		10.074	0.6908	1				5063	53	3375	3400	7101	7101					0.10038630658914371
FRKLNTKLM	9	Unmodified	_FRKLNTKLM_					0	0	0		ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8416137695312	2	575.841894	1149.66923	0.51788	0.00029822	0.097428	5.6103E-05	0.61531	0.00035432	575.8416443056561	84.489	1.7086	84.512	84.012	85.72	0.023132					156	88	3	0	0	0	0.32375	1	20611	20611		3.5965	1.2938	1	1635200			5064	53	3375	3400	7102	7102					0.10038630658914371
FRLPVFNWTAL	11	Unmodified	_FRLPVFNWTAL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2583923339844	3	455.255557	1362.74484	0.44144	0.00020097	-2.3291	-0.0010603	-1.8877	-0.00085937	455.25488261544723	47.716	0.76096	47.796	47.458	48.219	0.080032					61	29	3	0	0	0	0.40738	1	9436	9436		2.6312	0	1	235850			5065	3799	3376	3401	7103	7103					0.07797931110826539
FRLSYETF	8	Unmodified	_FRLSYETF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2824096679688	2	531.766374	1061.5182	0.36129	0.00019212	-4.055	-0.0021563	-3.6937	-0.0019642	531.762743229317	62.016	0.2288	62.016	61.974	62.203	0					11	8	2	0	0	0	0.48651	1	14025	14025		14.582	1.0738	1	59947	+		5066	10731	3377	3402	7104	7104					-0.010102324481067626
FRNHDLDI	8	Unmodified	_FRNHDLDI_					0	0	0			REV__ENST00000468653.5_1_3:160117521-160130242:+|nuORF	REV__ENST00000468653.5_1_3:160117521-160130242:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2769165039062	2	515.259248	1028.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.115	1	67.18	66.68	67.68	0.065071								0	0	0	0.38822	1	15379	15379		4.756	1.8668	1		+		5067	8751	3378	3403	7105	7105					-0.00916884876369295
FRNHERTMFA	10	Unmodified	_FRNHERTMFA_					0	0	0			REV__ENST00000587199.5_3_19:38182482-38183144:-|nuORF	REV__ENST00000587199.5_3_19:38182482-38183144:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.8794860839844	3	436.880384	1307.61932	0.31664	0.00013833	-0.84798	-0.00037047	-0.53135	-0.00023213	437.21479458563334	81.726	1.3259	81.748	81.022	82.347	0.021866					64	47	2	0	0	0	0.31852	1	19927	19927		0	0	1	96104	+		5068	12565	3379	3404	7106	7106					-0.022181040170607957
FRNMGERDQR	10	Unmodified	_FRNMGERDQR_					0	0	0		ENST00000459993.5_1_3:56657437-56657518:-|nuORF	ENST00000459993.5_1_3:56657437-56657518:-|nuORF	ENST00000459993.5_1_3:56657437-56657518:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.8789978027344	3	436.879044	1307.6153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.861	1	98.861	98.361	99.361	0								0	0	0	0.33882	1	25200	25200		1.5923	0.13716	1				5069	6599	3380	3405	7107	7107					-0.026201935107565077
FRPCYLRVC	9	Unmodified	_FRPCYLRVC_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2937622070312	2	578.791346	1155.56814	0.3972	0.0002299	-0.31218	-0.00018069	0.085019	4.9208E-05	578.7909754819271	38.488	2.6897	38.574	38.236	40.925	0.08688					202	104	4	0	0	0	0.34646	1	7244	7244		0.6015	0	1	427100			5070	3788	3381	3406	7108	7108					-0.0034214431543659884
FRPEETKSG	9	Unmodified	_FRPEETKSG_					0	0	0		ENST00000491898.5_1_6:43023672-43027146:-|nuORF;ENSG00000112651|ENST00000388752|MRPL2	ENST00000491898.5_1_6:43023672-43027146:-|nuORF	ENST00000491898.5_1_6:43023672-43027146:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.763671875	2	525.764363	1049.51417	0.056523	2.9718E-05	-1.344	-0.00070661	-1.2874	-0.00067689	525.7636244764715	35.761	0.48289	35.84	35.596	36.078	0.078827					37	17	3	0	0	0	0.33978	1	5926	5926		1.4819	0.15237	1	72710			5071	1767	3382	3407	7109	7109					-0.008603219417864238
FRPGKVLR	8	Unmodified	_FRPGKVLR_					0	0	0		nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-1|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-25|TAF1;ENST00000483365.1_1_X:70596867-70597689:+|nuORF;ENSG00000122728|ENST00000242310|TAF1L	nc|ENSG00000147133|P21675-23|TAF1;ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2751770019531	2	486.808711	971.602869	-0.23977	-0.00011672	-1.2259	-0.0005968	-1.4657	-0.00071352	486.80816830167663	32.867	0.22292	32.942	32.769	32.992	0.074322					13	9	2	0	0	0	0.3576	1	5028	5028		0.69038	0	1	20304			5072	3317;2194	3383	3408	7110	7110					0.11593182879164488
FRPGVRAR	8	Unmodified	_FRPGVRAR_					0	0	0			REV__ENST00000566021.1_1_16:14704654-14724033:-|nuORF	REV__ENST00000566021.1_1_16:14704654-14724033:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7873840332031	2	479.78831	957.562067	-0.42265	-0.00020278	-1.069	-0.00051291	-1.4917	-0.0007157	479.7876104058232	27.168	0.35791	27.168	27.006	27.364	0					34	23	2	0	0	0	0.54097	1	3493	3493		0.69038	0	1	16185	+		5073	12501	3384	3409	7111	7111					0.0815884155955473
FRQHAVPL	8	Unmodified	_FRQHAVPL_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.72149658203125	2	484.277244	966.539935	-0.16829	-8.15E-05	-1.6071	-0.00077829	-1.7754	-0.00085979	484.2764888228144	73.712	0.28676	73.712	73.571	73.857	0					11	9	2	0	0	0	0.35759	1	17556	17556		9.3474	0	1	64727	+		5074	9167	3385	3410	7112	7112					0.05532617091125758
FRQQYHRS	8	Unmodified	_FRQQYHRS_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7658081054688	2	561.283589	1120.55262	0.13196	7.4065E-05	2.0278	0.0011382	2.1598	0.0012122	561.2848502219287	39.291	0.27542	39.291	39.186	39.461	0					15	9	2	0	0	0	0.3576	1	7114	7114		7.9102	3.9658	1	47793	+		5075	8557	3386	3411	7113	7113					-0.0028297151663991826
FRRQRMQI	8	Unmodified	_FRRQRMQI_					0	0	0		CEP135-DCAF13|1|fusion;ENST00000515081.1_1_4:56820464-56832049:+|nuORF;nc|ENSG00000174799|Q66GS9-2|CEP135;ENSG00000174799|ENST00000257287|CEP135	CEP135-DCAF13|1|fusion	CEP135-DCAF13|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3191528320312	2	567.819284	1133.62402	0.054095	3.0716E-05	-0.97978	-0.00055634	-0.92568	-0.00052562	567.818587599469	46.249	0.60426	46.335	45.954	46.558	0.085621					46	24	3	0	0	0	0.52924	1	9001	9001		8.5933	0.68312	1	504190			5076	122	3387	3412	7114	7114					0.06254824916391044
FRSLYRYPL	9	Unmodified	_FRSLYRYPL_					0	0	0		ENST00000529121.2_1_11:61102034-61102169:+|nuORF	ENST00000529121.2_1_11:61102034-61102169:+|nuORF	ENST00000529121.2_1_11:61102034-61102169:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.56072998046875	3	405.560869	1213.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.995	1	65.995	65.495	66.495	0								0	0	0	0.25992	1	15189	15189		4.5289	0	1				5077	7015	3388	3413	7115	7115					0.06249400013916784
FRSRYDESG	9	Unmodified	_FRSRYDESG_					0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7578125	2	558.757069	1115.49959	-0.11203	-6.2595E-05	1.5283	0.00085394	1.4163	0.00079135	558.7578281919897	24.491	0.52567	24.491	24.279	24.805	0					65	40	2	0	0	0	0.34754	1	2713	2713		0.45834	0.057624	1	27167	+		5078	10631	3389	3414	7116	7116					-0.053543940899544396
FRTSYSSGPF	10	Unmodified	_FRTSYSSGPF_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.77197265625	2	574.772188	1147.52982	-0.17805	-0.00010234	0.051001	2.9314E-05	-0.12705	-7.3024E-05	574.7721595810391	43.203	0.91315	43.203	42.916	43.829	0					82	32	4	0	0	0	0.39662	1	8242	8242		12.241	0	1	394950	+		5079	8802	3390	3415	7117	7117					-0.03804035424764152
FRTSYSSGPF	10	Unmodified	_FRTSYSSGPF_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7720947265625	2	574.772188	1147.52982	0.17018	9.7818E-05	-0.92164	-0.00052973	-0.75145	-0.00043191	574.7721793678236	51.463	3.1824	51.463	50.981	54.164	0					259	115	5	0	0	0	0.26541	2	10849	10849;11199		26.268	3.5319	1	1793800	+		5080	8802	3390	3415	7118;7119	7118					-0.03804035424764152
FRTSYSSGPF	10	Unmodified	_FRTSYSSGPF_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7723388671875	2	574.772188	1147.52982	0.26944	0.00015486	-0.88611	-0.00050931	-0.61667	-0.00035445	574.7721335989038	51.386	1.5548	51.456	50.996	52.551	0.069878					215	59	5	0	0	0	0.26541	1	10605	10605		26.268	3.5319	1	1744200	+		5081	8802	3390	3415	7120	7120					-0.03804035424764152
FRVRSRFNP	9	Unmodified	_FRVRSRFNP_					0	0	0		ENST00000512747.3_1_X:70328447-70329231:-|nuORF;nc|ENSG00000147168|P31785-2|IL2RG;ENSG00000147168|ENST00000374202|IL2RG	ENST00000512747.3_1_X:70328447-70329231:-|nuORF	ENST00000512747.3_1_X:70328447-70329231:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.3319702148438	2	589.830706	1177.64686	-0.018373	-1.0837E-05	-1.2404	-0.0007316	-1.2587	-0.00074244	589.8299157043443	29.85	0.37678	29.85	29.678	30.055	0					26	17	2	0	0	0	0.34704	1	4248	4248		0.52476	0	1	20075			5082	3320	3391	3416	7121	7121					0.06514167305522278
FRVWFPPP	8	Unmodified	_FRVWFPPP_					0	0	0			REV__ENST00000368339.9_2_1:155657968-155658130:-|nuORF	REV__ENST00000368339.9_2_1:155657968-155658130:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2658081054688	2	523.284537	1044.55452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.999	1	35.999	35.499	36.499	0								0	0	0	0.38822	1	6087	6087		2.5775	0	1		+		5083	11574	3392	3417	7122	7122					0.03402689239260326
FRYKKRVYKQA	11	Unmodified	_FRYKKRVYKQA_					0	0	0		ENSG00000162105|ENST00000601538|SHANK2	ENSG00000162105|ENST00000601538|SHANK2	ENSG00000162105|ENST00000601538|SHANK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.95916748046875	3	496.292894	1485.85685	0.66512	0.00033009	0.40654	0.00020176	1.0717	0.00053186	496.29307803900696	98.599	0.87057	98.599	98.312	99.182	0					98	54	3	0	0	0	0.31097	1	25154	25154		1.3296	0.82369	1	241290			5084	3813	3393	3418	7123	7123					0.13335785187837246
FRYKVPAEI	9	Unmodified	_FRYKVPAEI_					0	0	0		nc|ENSG00000138760|Q14108-2|SCARB2;ENSG00000138760|ENST00000264896|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8184814453125	2	561.818941	1121.62333	0.32756	0.00018403	4.0783	0.0022913	4.4058	0.0024753	561.8187834843982	47.929	1.811	47.929	47.583	49.394	0					246	62	6	0	0	0	0.28472	1	9978	9978		8.7454	3.0136	1	2184600			5085	2936	3394	3419	7124	7124					0.06738308748322197
FRYKVPAEI	9	Unmodified	_FRYKVPAEI_					0	0	0		nc|ENSG00000138760|Q14108-2|SCARB2;ENSG00000138760|ENST00000264896|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8180541992188	2	561.818941	1121.62333	0.58766	0.00033016	3.5664	0.0020037	4.154	0.0023338	561.8186918345752	47.841	1.626	47.921	47.593	49.219	0.080032					185	58	5	0	0	0	0.30397	1	9729	9729		6.2058	0.9089	1	2199200			5086	2936	3394	3419	7125	7125					0.06738308748322197
FSAAWYLI	8	Unmodified	_FSAAWYLI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.763671875	2	485.755278	969.496004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.486	1	51.556	51.056	52.056	0.069874								0	0	0	0.38822	1	10631	10631		5.2307	2.3415	1				5087	1770	3395	3420	7126	7126					0.010035878741291526
FSADEDGPIV	10	Unmodified	_FSADEDGPIV_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7682495117188	2	525.242929	1048.47131	0.43402	0.00022797	-0.16745	-8.7952E-05	0.26657	0.00014001	525.2428495904448	55.636	0.34121	55.636	55.441	55.782	0					17	11	2	0	0	0	0.31585	1	12058	12058		10.824	0	1	76511	+		5088	9424	3396	3421	7127	7127					-0.05099136789908698
FSADSIQPFLP	11	Unmodified	_FSADSIQPFLP_					0	0	0			REV__ENST00000229633.6_1_6:126299317-126299416:+|nuORF	REV__ENST00000229633.6_1_6:126299317-126299416:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3108520507812	2	611.311146	1220.60774	0.17972	0.00010986	0.061814	3.7788E-05	0.24153	0.00014765	611.3109548782363	56.237	0.78751	56.304	55.948	56.735	0.066448					76	29	4	0	0	0	0.38315	1	12138	12138		8.1555	1.4324	1	446460	+		5089	11191	3397	3422	7128	7128					0.006259774406089491
FSAFPSFLL	9	Unmodified	_FSAFPSFLL_					0	0	0		ENST00000458587.6_1_X:152986386-152988647:-|nuORF	ENST00000458587.6_1_X:152986386-152988647:-|nuORF	ENST00000458587.6_1_X:152986386-152988647:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.774658203125	2	514.776211	1027.53787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.469	1	74.518	74.018	75.018	0.048546								0	0	0	0.18435	1	17615	17615		20.454	1.0146	1				5090	6595	3398	3423	7129	7129					0.02520143562674093
FSAPENAVR	9	Unmodified	_FSAPENAVR_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7535705566406	2	495.753798	989.493044	0.20281	0.00010054	-0.4936	-0.0002447	-0.29079	-0.00014416	495.75365459226055	34.702	0.63463	34.778	34.642	35.276	0.076244					39	27	2	0	0	0	0.16392	1	5589	5589		22.736	3.4793	1	60553			5091	1721	3399	3424	7130	7130					-0.0021228725066748666
FSARRTCRARW	11	Unmodified	_FSARRTCRARW_					0	0	0		ENST00000457336.1_1_2:113402667-113403246:-|nuORF	ENST00000457336.1_1_2:113402667-113403246:-|nuORF	ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.5826416015625	3	470.582561	1408.72585	-0.070469	-3.3161E-05	-0.15933	-7.4977E-05	-0.2298	-0.00010814	470.5824984815566	59.479	0.48446	59.551	59.271	59.756	0.072342					30	18	2	0	0	0	0.39158	1	13095	13095		6.2344	1.1868	1	238360			5092	6592	3400	3425	7131	7131					0.03784071268137268
FSAVFDEDK	9	Unmodified	_FSAVFDEDK_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.750244140625	2	529.245472	1056.47639	0.38222	0.00020229	3.0888	0.0016347	3.471	0.001837	529.7503925749388	75.769	0.20831	75.769	75.652	75.86	0					15	11	2	0	0	0	0.19398	1	18178	18178		19.257	1.1106	1	756750			5093	2898	3401	3426	7132	7132					-0.04958832927286494
FSAYPCFE	8	Unmodified	_FSAYPCFE_					0	0	0			REV__ENSG00000134504|ENST00000580059|KCTD1	REV__ENSG00000134504|ENST00000580059|KCTD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.1986999511719	2	482.199479	962.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.549	1	44.637	44.137	45.137	0.08754								0	0	0	0.38822	1	8538	8538		2.5775	0.27475	1		+		5094	9180	3402	3427	7133	7133					-0.09829214545311515
FSCISGYSF	9	Unmodified	_FSCISGYSF_					0	0	0			REV__ENSG00000174175|ENST00000263686|SELP	REV__ENSG00000174175|ENST00000263686|SELP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7174072265625	2	505.718036	1009.42152	-0.65824	-0.00033288	-1.1021	-0.00055734	-1.7603	-0.00089022	505.71761954249234	42.003	0.67028	42.003	41.609	42.279	0					38	23	2	0	0	0	0.29105	1	7935	7935		7.9102	1.187	1	81714	+		5095	10339	3403	3428	7134	7134					-0.0828154299954349
FSCISGYSF	9	Unmodified	_FSCISGYSF_					0	0	0			REV__ENSG00000174175|ENST00000263686|SELP	REV__ENSG00000174175|ENST00000263686|SELP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	505.718036	1009.42152	-0.65824	-0.00033288	-1.1021	-0.00055734	-1.7603	-0.00089022	505.71761954249234	42.003	0.67028	42.003	41.609	42.279	0	0.010197	-0.00024127	NaN	7.9102	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81714	+		5096	10339	3403	3428							-0.0828154299954349
FSCISGYSF	9	Unmodified	_FSCISGYSF_					0	0	0			REV__ENSG00000174175|ENST00000263686|SELP	REV__ENSG00000174175|ENST00000263686|SELP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	505.718036	1009.42152	-0.41439	-0.00020957	-0.67131	-0.00033949	-1.0857	-0.00054906	505.7177513033309	41.893	0.58014	41.982	41.735	42.316	0.089764	-0.010197	0.00019442	NaN	7.9102	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60308	+		5097	10339	3403	3428							-0.0828154299954349
FSCLYCTLL	9	Carbamidomethyl (C)	_FSC(Carbamidomethyl (C))LYCTLL_	FSC(0.883)LYC(0.117)TLL		FSC(8.8)LYC(-8.8)TLL		0	1	0			REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2639770507812	2	560.264296	1118.51404	0.45175	0.0002531	-0.09912	-5.5533E-05	0.35263	0.00019757	560.264372991057	82.16	0.83202	82.181	81.846	82.678	0.021866					102	29	5	0	0	0	0.030375	1	19932	19932		50.855	6.9967	2	2118200	+		5098	12041	3404	3429	7135	7135	20				-0.04047781257668248
FSDDWLCHF	9	Unmodified	_FSDDWLCHF_					0	0	0			REV__ENST00000476625.5_1_X:48660534-48664079:+|nuORF	REV__ENST00000476625.5_1_X:48660534-48664079:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.239667	1168.46478	0.86288	0.00050499	-0.18775	-0.00010988	0.67513	0.00039512	585.2396300959855	85.838	0.65846	85.863	85.599	86.258	0.025177					96	23	6	0	0	0	0.2446	1	21041	21041		11.64	1.5664	1	1682900	+		5099	8335	3405	3430	7136	7136					-0.11271353222264224
FSDFGKAMF	9	Unmodified	_FSDFGKAMF_					0	0	0		ENSG00000108950|ENST00000592554|FAM20A;ENST00000592847.1_1_17:66537075-66551874:-|nuORF	ENSG00000108950|ENST00000592554|FAM20A	ENSG00000108950|ENST00000592554|FAM20A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7515869140625	2	525.241678	1048.4688	-0.20039	-0.00010525	-2.0643	-0.0010843	-2.2647	-0.0011895	525.2406613024114	26.705	0.31719	26.705	26.54	26.857	0					30	20	2	0	0	0	0.25174	1	3315	3315		7.2892	2.0586	1	17593			5100	1616	3406	3431	7137	7137					-0.05349263728544429
FSDGWIWLP	9	Unmodified	_FSDGWIWLP_					0	0	0			REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF	REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7654418945312	2	560.776742	1119.53893	-0.10583	-5.9349E-05	-0.47176	-0.00026455	-0.5776	-0.0003239	560.7764484698905	44.387	0.99035	44.387	44.034	45.024	0					53	34	3	0	0	0	0.29105	1	8679	8679		7.9102	0.62092	1	78209	+		5101	12264	3407	3432	7138	7138					-0.01605642068443558
FSDGWIWLP	9	Unmodified	_FSDGWIWLP_					0	0	0			REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF	REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7655029296875	2	560.776742	1119.53893	0.12684	7.113E-05	-0.46092	-0.00025847	-0.33408	-0.00018735	560.7763631228696	44.378	0.86004	44.467	43.901	44.761	0.088921					46	29	2	0	0	0	0.29105	1	8508	8508		7.9102	0.62092	1	64412	+		5102	12264	3407	3432	7139	7139					-0.01605642068443558
FSDGWIWLP	9	Unmodified	_FSDGWIWLP_					0	0	0			REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF	REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	560.776742	1119.53893	0.12684	7.113E-05	-0.46092	-0.00025847	-0.33408	-0.00018735	560.7763631228696	44.378	0.86004	44.467	43.901	44.761	0.088921	0.039914	4.8063E-06	NaN	7.9102	46	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64412	+		5103	12264	3407	3432							-0.01605642068443558
FSDSVKKAL	9	Unmodified	_FSDSVKKAL_					0	0	0		ENST00000371130.7_2_X:123518656-123518695:-|nuORF	ENST00000371130.7_2_X:123518656-123518695:-|nuORF	ENST00000371130.7_2_X:123518656-123518695:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2353515625	2	497.782025	993.549496	0.22953	0.00011426	-0.53738	-0.0002675	-0.30784	-0.00015324	497.78170592920884	39.11	0.3367	39.11	38.95	39.286	0					17	12	2	0	0	0	0.25845	1	7062	7062		2.0598	0.21551	1	25633			5104	6206	3408	3433	7140	7140					0.052463405860066814
FSDSVKKAL	9	Unmodified	_FSDSVKKAL_					0	0	0		ENST00000371130.7_2_X:123518656-123518695:-|nuORF	ENST00000371130.7_2_X:123518656-123518695:-|nuORF	ENST00000371130.7_2_X:123518656-123518695:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	497.782025	993.549496	0.31165	0.00015513	-0.48233	-0.0002401	-0.17069	-8.4964E-05	497.7817592253354	38.952	0.2383	39.039	38.939	39.178	0.086884	-0.035429	4.0927E-05	NaN	2.0598	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26058			5105	6206	3408	3433							0.052463405860066814
FSDTRDLD	8	Unmodified	_FSDTRDLD_					0	0	0			REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2198181152344	2	484.719621	967.42469	0.18631	9.031E-05	-1.4515	-0.00070355	-1.2651	-0.00061324	484.71813165395264	92.088	1.218	92.125	91.645	92.863	0.03653					89	43	3	0	0	0	0.53817	1	23101	23101		2.5775	0	1	231630	+		5106	13047	3409	3434	7141	7141					-0.06032576621203134
FSEFLEVL	8	Unmodified	_FSEFLEVL_					0	0	0			REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2555847167969	2	492.257851	982.501149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.395	1	60.395	59.895	60.895	0								0	0	0	0.38081	1	13477	13477		26.341	1.6674	1		+		5107	7822	3410	3435	7142	7142					0.009198469461125569
FSEPFHLI	8	Unmodified	_FSEPFHLI_					0	0	0		ENST00000470841.1_1_1:161680536-161681272:+|nuORF;nc|ENSG00000132185|Q7L513-6|FCRLA;nc|ENSG00000132185|Q7L513-13|FCRLA;nc|ENSG00000132185|Q7L513-8|FCRLA;nc|ENSG00000132185|Q7L513-3|FCRLA;nc|ENSG00000132185|Q7L513-12|FCRLA;ENSG00000132185|ENST00000236938|FCRLA;nc|ENSG00000132185|Q7L513-2|FCRLA;nc|ENSG00000132185|Q7L513-9|FCRLA;nc|ENSG00000132185|Q7L513-10|FCRLA	ENST00000470841.1_1_1:161680536-161681272:+|nuORF	ENST00000470841.1_1_1:161680536-161681272:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2201843261719	2	495.258185	988.501818	0.54875	0.00027177	-0.72575	-0.00035944	-0.17701	-8.7664E-05	495.25756550736133	63.707	0.70287	63.778	63.643	64.346	0.071018					35	23	2	0	0	0	0.39998	1	14357	14357		26.341	0	1	229000			5108	2558	3411	3436	7143	7143					0.007106863858211909
FSEQVPPAF	9	Unmodified	_FSEQVPPAF_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2530517578125	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.194	1	87.194	86.694	87.694	0								0	0	0	0.25692	1	21655	21655		7.9102	2.6795	1		+		5109	8243	3412	3437	7144	7144					-0.01777921339430577
FSETDAFTCFF	11	Unmodified	_FSETDAFTCFF_					0	0	0			REV__ENSG00000167825|ENST00000301532|OR5I1	REV__ENSG00000167825|ENST00000301532|OR5I1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.8504638671875	3	438.849757	1313.52744	0.55532	0.0002437	0.99584	0.00043702	1.5512	0.00068073	438.8499571911461	94.315	0.52757	94.315	94.084	94.612	0					67	24	4	0	0	0	0.39824	1	23796	23796		4.7159	0.59929	1	347960	+		5110	10132	3413	3438	7145	7145					-0.11678251944749718
FSETDAFTCFF	11	Unmodified	_FSETDAFTCFF_					0	0	0			REV__ENSG00000167825|ENST00000301532|OR5I1	REV__ENSG00000167825|ENST00000301532|OR5I1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	438.849757	1313.52744	0.55532	0.0002437	0.99584	0.00043702	1.5512	0.00068073	438.8499571911461	94.315	0.52757	94.315	94.084	94.612	0	-0.00092497	-2.7503E-05	NaN	4.7159	67	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347960	+		5111	10132	3413	3438							-0.11678251944749718
FSETDAFTCFF	11	Unmodified	_FSETDAFTCFF_					0	0	0			REV__ENSG00000167825|ENST00000301532|OR5I1	REV__ENSG00000167825|ENST00000301532|OR5I1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	438.849757	1313.52744	0.21297	9.3461E-05	1.0483	0.00046005	1.2613	0.00055351	438.8498692142051	94.278	0.5435	94.317	94.123	94.667	0.038086	0.00092497	4.1573E-05	NaN	4.7159	60	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314960	+		5112	10132	3413	3438							-0.11678251944749718
FSETNVIR	8	Unmodified	_FSETNVIR_					0	0	0			REV__nc|ENSG00000133858|O60293-2|ZFC3H1	REV__nc|ENSG00000133858|O60293-2|ZFC3H1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.25640869140625	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.397	1	37.482	36.982	37.982	0.084476								0	0	0	0.38822	1	6384	6384		0.69038	0	1		+		5113	9156	3414	3439	7146	7146					0.014125968921121057
FSEVEWLF	8	Unmodified	_FSEVEWLF_					0	0	0		ENST00000510312.6_1_5:73199984-73200204:+|nuORF	ENST00000510312.6_1_5:73199984-73200204:+|nuORF	ENST00000510312.6_1_5:73199984-73200204:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7561645507812	2	528.755475	1055.4964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.805	1	85.83	85.33	86.33	0.025169								0	0	0	0.38822	1	21072	21072		13.508	0	1				5114	6907	3415	3440	7147	7147					-0.029130371966857638
FSEWRGWA	8	Unmodified	_FSEWRGWA_					0	0	0		ENST00000461912.1_1_7:56144354-56144429:+|nuORF	ENST00000461912.1_1_7:56144354-56144429:+|nuORF	ENST00000461912.1_1_7:56144354-56144429:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.8029174804688	2	519.743234	1037.47191	0.44358	0.00023055	3.1226	0.001623	3.5662	0.0018535	519.7444824712675	68.466	0.18099	68.466	68.377	68.558	0					7	5	2	0	0	0	0.35713	1	15945	15945		14.582	2.0501	1	56297			5115	6615	3416	3441	7148	7148					-0.04532252559533845
FSFGYFSK	8	Unmodified	_FSFGYFSK_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2555847167969	2	491.737086	981.459619	0.25274	0.00012428	-0.0097116	-4.7756E-06	0.24303	0.00011951	491.73697185880064	95.57	0.45233	95.57	95.328	95.78	0					33	19	3	0	0	0	0.33323	1	24188	24188		32.305	2.0807	1	591430			5116	3177	3417	3442	7149	7149					-0.031852890225763986
FSFKLGIDKI	10	Unmodified	_FSFKLGIDKI_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|184|1|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|184|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3411254882812	2	584.342249	1166.66995	0.64875	0.00037909	-0.39423	-0.00023037	0.25452	0.00014872	584.3422675162496	57.727	0.45236	57.796	57.547	58	0.068375					32	16	3	0	0	0	0.3639	1	12539	12539		15.739	0	1	250950	+		5117	7768	3418	3443	7150	7150					0.09327748579585204
FSFLCMFFI	9	Unmodified	_FSFLCMFFI_					0	0	0			REV__nc|ENSG00000204267|Q03519-2|TAP2	REV__nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7740478515625	2	577.774299	1153.53405	0.4666	0.00026959	-0.74963	-0.00043312	-0.28303	-0.00016353	577.7738649967432	94.167	0.34782	94.167	94.023	94.371	0					34	16	3	0	0	0	0.05573	2	23771	23771;23816		42.095	12.356	1	171310	+		5118	10939	3419	3444	7151;7152	7151					-0.03657985527047458
FSFLCMFFI	9	Unmodified	_FSFLCMFFI_					0	0	0			REV__nc|ENSG00000204267|Q03519-2|TAP2	REV__nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2754516601562	2	577.774299	1153.53405	0.43469	0.00025115	-0.60719	-0.00035082	-0.1725	-9.9665E-05	577.7737662687696	94.16	0.35068	94.198	94.02	94.37	0.038086					30	15	3	0	0	0	0.092418	1	23639	23639		34.102	11.366	1	145780	+		5119	10939	3419	3444	7153	7153					-0.03657985527047458
FSFLCMFFI	9	Unmodified	_FSFLCMFFI_					0	0	0			REV__nc|ENSG00000204267|Q03519-2|TAP2	REV__nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	577.774299	1153.53405	0.4666	0.00026959	-0.74963	-0.00043312	-0.28303	-0.00016353	577.7738649967432	94.167	0.34782	94.167	94.023	94.371	0	-0.015488	-8.037E-05	NaN	42.095	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171310	+		5120	10939	3419	3444							-0.03657985527047458
FSFLCMFFI	9	Unmodified	_FSFLCMFFI_					0	0	0			REV__nc|ENSG00000204267|Q03519-2|TAP2	REV__nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	577.774299	1153.53405	0.43469	0.00025115	-0.60719	-0.00035082	-0.1725	-9.9665E-05	577.7737662687696	94.16	0.35068	94.198	94.02	94.37	0.038086	0.015488	8.4227E-05	NaN	42.095	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145780	+		5121	10939	3419	3444							-0.03657985527047458
FSFLFFFLFFF	11	Unmodified	_FSFLFFFLFFF_					0	0	0		ENST00000463934.1_1_22:39475113-39475338:+|nuORF	ENST00000463934.1_1_22:39475113-39475338:+|nuORF	ENST00000463934.1_1_22:39475113-39475338:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2444763183594	3	503.593287	1507.75803	0.36172	0.00018216	-0.78888	-0.00039727	-0.42716	-0.00021511	503.5927829470412	74.771	0.62479	74.771	74.31	74.935	0					32	22	2	0	0	0	0.31051	1	17832	17832		7.0371	2.9205	1	82469			5122	6625	3420	3445	7154	7154					0.02446369170206708
FSFLPQSSL	9	Unmodified	_FSFLPQSSL_					0	0	0		nc|ENSG00000102468|P28223-2|HTR2A;ENSG00000102468|ENST00000542664|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7504272460938	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.712	1	85.712	85.212	86.212	0								0	0	0	0.27935	1	21201	21201		3.2813	0	1				5123	1316	3421	3446	7155	7155					0.011666516946661432
FSFRYQQE	8	Unmodified	_FSFRYQQE_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7683715820312	2	552.759081	1103.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.986	1	44.986	44.486	45.486	0								0	0	0	0.3878	1	8798	8798		14.838	3.198	1				5124	4991	3422	3447	7156	7156					-0.04400304596265414
FSFSFDGW	8	Unmodified	_FSFSFDGW_					0	0	0		ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR;TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	ENSG00000116147|ENST00000367674|TNR	ENSG00000116147|ENST00000367674|TNR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.76812744140625	2	496.711068	991.407583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.333	1	95.372	94.872	95.872	0.038872								0	0	0	0.38796	1	23968	23968		14.582	1.0738	1				5125	1944	3423	3448	7157	7157					-0.0884645243633031
FSFTMLHFI	9	Unmodified	_FSFTMLHFI_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7706909179688	2	571.788795	1141.56304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.047	1	64.047	63.547	64.547	0								0	0	0	0.23452	1	14594	14594		12.532	0	1				5126	3823	3424	3449	7158	7158					-0.0020812490640764736
FSFYVVYGAT	10	Unmodified	_FSFYVVYGAT_					0	0	0		tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.81103515625	2	577.281857	1152.54916	0.20791	0.00012002	0.64632	0.00037311	0.85423	0.00049313	577.2821401199777	36.34	0.36042	36.34	36.184	36.545	0					23	13	2	0	0	0	0.31731	1	6208	6208		3.2813	0	1	39634			5127	13501	3425	3450	7159	7159					-0.021010791338540002
FSGASQLGQC	10	Unmodified	_FSGASQLGQC_					0	0	0			REV__ENST00000449426.1_1_7:56356611-56356824:+|nuORF	REV__ENST00000449426.1_1_7:56356611-56356824:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.22344970703125	2	499.224017	996.43348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.249	1	76.288	75.788	76.788	0.03923								0	0	0	0.31912	1	18160	18160		15.248	0.41021	1		+		5128	11918	3426	3451	7160	7160					-0.0648792625634087
FSGVWVLEG	9	Unmodified	_FSGVWVLEG_					0	0	0			REV__ENST00000456496.6_1_7:149575832-149576763:+|nuORF	REV__ENST00000456496.6_1_7:149575832-149576763:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2576904296875	2	497.255643	992.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.599	1	64.668	64.168	65.168	0.068916								0	0	0	0.25992	1	14616	14616		7.2892	0.93513	1		+		5129	11948	3427	3452	7161	7161					0.00018382523194304667
FSHENQLVSAG	11	Unmodified	_FSHENQLVSAG_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-2|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-2|ADGRA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2880859375	2	594.785827	1187.5571	0.56505	0.00033608	-2.3692	-0.0014092	-1.8042	-0.0010731	595.2865952084276	66.834	1.0479	66.899	66.532	67.58	0.065071					87	38	4	0	0	0	0.28838	1	15419	15419		19.362	4.7802	1	542630	+		5130	10843	3428	3453	7162	7162					-0.029175518843885584
FSHFVCNL	8	Unmodified	_FSHFVCNL_					0	0	0		ENST00000463181.5_1_7:26238946-26239063:-|nuORF	ENST00000463181.5_1_7:26238946-26239063:-|nuORF	ENST00000463181.5_1_7:26238946-26239063:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7154541015625	2	483.728738	965.442923	0.030696	1.4848E-05	-0.38469	-0.00018608	-0.35399	-0.00017124	483.72851702282765	69.582	0.19667	69.645	69.528	69.724	0.062126					12	6	2	0	0	0	0.53345	1	16151	16151		5.7604	0.52976	1	79860			5131	6621	3429	3454	7163	7163					-0.041181131801636184
FSHHSNLIV	9	Unmodified	_FSHHSNLIV_					0	0	0		nc|ENSG00000213762|P52741-2|ZNF134;ENSG00000213762|ENST00000396161|ZNF134	nc|ENSG00000213762|P52741-2|ZNF134	nc|ENSG00000213762|P52741-2|ZNF134	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2774658203125	2	527.277441	1052.54033	0.023836	1.2568E-05	-0.14202	-7.4886E-05	-0.11819	-6.2318E-05	527.2773279772891	34.505	1.0787	34.581	34.221	35.3	0.076244					101	45	4	0	0	0	0.27929	2	5590	5454;5590		9.3831	3.1773	1	251880			5132	5556	3430	3455	7164;7165	7165					0.016159920203108413
FSHLPPSEEF	10	Unmodified	_FSHLPPSEEF_					0	0	0			REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|22|2|anti-sense	REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|22|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2810668945312	2	595.279846	1188.54514	0.35569	0.00021173	1.5103	0.00089908	1.866	0.0011108	595.2807003879615	67.684	0.18736	67.684	67.561	67.748	0					12	6	3	0	0	0	0.29844	1	15716	15716		22.736	2.1553	1	394180	+		5133	12948	3431	3456	7166	7166					-0.04159168627575127
FSHPREPAL	9	Unmodified	_FSHPREPAL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2772216796875	2	527.277441	1052.54033	0.028171	1.4854E-05	-0.047065	-2.4816E-05	-0.018894	-9.9626E-06	527.2773217542433	34.586	1.1581	34.586	34.231	35.389	0					101	44	3	0	0	0	0.17428	1	5695	5695		21.537	3.3906	1	191970			5134	3801	3432	3457	7167	7167					0.016159920203108413
FSHPREPAL	9	Unmodified	_FSHPREPAL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2772827148438	2	527.277441	1052.54033	0.023836	1.2568E-05	-0.14202	-7.4886E-05	-0.11819	-6.2318E-05	527.2773279772891	34.505	1.0787	34.581	34.221	35.3	0.076244					101	45	4	0	0	0	0.07372	1	5540	5540		38.176	10.547	1	251880			5135	3801	3432	3457	7168	7168					0.016159920203108413
FSICLLSTF	9	Unmodified	_FSICLLSTF_					0	0	0			REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF	REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7542114257812	2	515.767529	1029.5205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.854	1	41.854	41.354	42.354	0								0	0	0	0.25692	1	7852	7852		7.9102	0	1		+		5136	11188	3433	3458	7169	7169					0.006924799653461378
FSIEEIHKY	9	Unmodified	_FSIEEIHKY_					0	0	0		tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2897338867188	2	583.298039	1164.58152	0.52656	0.00030714	1.1812	0.00068898	1.7077	0.00099612	583.2976831393607	68.995	0.42435	69.057	68.718	69.142	0.062126					30	15	3	0	0	0	0.25979	1	15895	15895		11.64	2.2572	1	245230			5137	13476	3434	3459	7170	7170					0.005817082691237374
FSIEQVLGAFG	11	Unmodified	_FSIEQVLGAFG_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2904052734375	2	584.305864	1166.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.984	1	72.04	71.54	72.54	0.055939								0	0	0	0.3074	1	16857	16857		12.241	1.4167	1		+		5138	9634	3435	3460	7171	7171					0.02053994786160729
FSIHFLTQT	9	Unmodified	_FSIHFLTQT_					0	0	0			REV__ENST00000457388.1_1_10:37627086-37627398:+|nuORF	REV__ENST00000457388.1_1_10:37627086-37627398:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2224731445312	2	547.287474	1092.5604	0.21128	0.00011563	4.2722	0.0023381	4.4835	0.0024537	547.7909284807101	51.038	0.20564	51.038	50.856	51.062	0					8	6	2	0	0	0	0.2446	1	10607	10607		11.64	3.047	1	25292	+		5139	11951	3436	3461	7172	7172					0.01781742960270094
FSINFWRYI	9	Unmodified	_FSINFWRYI_					0	0	0			REV__ENSG00000166986|ENST00000262027|MARS1	REV__ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.87542724609375	3	415.885353	1244.63423	-0.25243	-0.00010498	0.64748	0.00026928	0.39504	0.00016429	415.88493741367165	31.141	0.39534	31.214	31.026	31.421	0.073782					26	19	2	0	0	0	0.34197	1	4487	4487		1.1933	0	1	21122	+		5140	10103	3437	3462	7173	7173					0.021697111226103516
FSINFWRYI	9	Unmodified	_FSINFWRYI_					0	0	0			REV__ENSG00000166986|ENST00000262027|MARS1	REV__ENSG00000166986|ENST00000262027|MARS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.87542724609375	3	415.885353	1244.63423	-0.25662	-0.00010673	0.14178	5.8964E-05	-0.11484	-4.7762E-05	415.88461846561813	30.891	0.36271	30.965	30.798	31.161	0.073782					25	17	2	0	0	0	0.25952	1	4487	4487		1.1933	0	1	17359	+		5141	10103	3437	3462	7174	7174					0.021697111226103516
FSITEHESF	9	Unmodified	_FSITEHESF_					0	0	0		ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7523193359375	2	548.750921	1095.48729	0.64229	0.00035246	0.25246	0.00013854	0.89475	0.000491	548.7519452732429	85.634	0.73015	85.659	85.358	86.088	0.025169					64	28	3	0	0	0	0.10833	1	21069	21069		30.637	3.7529	1	740070			5142	3196	3438	3463	7175	7175					-0.05663430552999671
FSKKKKKKKKK	11	Unmodified	_FSKKKKKKKKK_					0	0	0			REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3285217285156	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.849	1	23.949	23.449	24.449	0.099739								0	0	0	0.34188	1	2401	2401		0.08335	0.08335	1		+		5143	11479	3439	3464	7176	7176					0.279389961581046
FSKYGGQRSQG	11	Unmodified	_FSKYGGQRSQG_					0	0	0		ENST00000469358.5_1_6:30887456-30890206:+|nuORF	ENST00000469358.5_1_6:30887456-30890206:+|nuORF	ENST00000469358.5_1_6:30887456-30890206:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.8180541992188	2	607.799269	1213.58398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.452	1	65.519	65.019	66.019	0.066872								0	0	0	0.25199	1	14877	14877		20.581	10.507	1				5144	6657	3440	3465	7177	7177					-0.014264432732034038
FSLDNGALQL	10	Unmodified	_FSLDNGALQL_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2823486328125	2	539.282389	1076.55022	0.16342	8.8128E-05	-0.10011	-5.3985E-05	0.063312	3.4143E-05	539.2822664049507	35.359	1.5481	35.359	34.854	36.402	0					139	57	3	0	0	0	0.45945	1	5813	5813		2.9952	0	1	159250	+		5145	10971	3441	3466	7178	7178					0.01501135235048423
FSLEEWEFL	9	Unmodified	_FSLEEWEFL_					0	0	0		ENSG00000197124|ENST00000397165|ZNF682	ENSG00000197124|ENST00000397165|ZNF682	ENSG00000197124|ENST00000397165|ZNF682	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.283935546875	2	600.284597	1198.55464	0.45008	0.00027017	-0.57015	-0.00034225	-0.12008	-7.2079E-05	600.2839706117	67.768	1.1274	67.768	67.46	68.587	0					84	41	3	0	0	0	0.10067	1	15700	15700		32.305	0	1	501420			5146	5274	3442	3467	7179	7179					-0.036694003420507215
FSLEKKYY	8	Unmodified	_FSLEKKYY_					0	0	0		ENST00000256255.10_2_8:29921247-29921394:-|nuORF	ENST00000256255.10_2_8:29921247-29921394:-|nuORF	ENST00000256255.10_2_8:29921247-29921394:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2720336914062	2	539.2844	1076.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.536	1	57.536	57.036	58.036	0								0	0	0	0.38822	1	12611	12611		12.532	0.89125	1				5147	5848	3443	3468	7180	7180					0.01903224728744135
FSLEKPPDDE	10	Unmodified	_FSLEKPPDDE_					0	0	0		PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4	PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant	PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3187255859375	2	588.774593	1175.53463	0.46922	0.00027627	0.2157	0.000127	0.68493	0.00040327	588.7745320643182	74.347	0.29703	74.347	74.23	74.527	0					17	10	2	0	0	0	0.28982	1	17714	17714		26.268	5.8536	1	211660			5148	5505	3444	3469	7181	7181					-0.04611196072664825
FSLEKPPDDE	10	Unmodified	_FSLEKPPDDE_					0	0	0		PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4	PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant	PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3184814453125	2	588.774593	1175.53463	0.65321	0.00038459	-0.72468	-0.00042667	-0.071465	-4.2077E-05	588.7743521054431	74.487	0.11153	74.536	74.482	74.593	0.048546					5	3	2	0	0	0	0.31565	1	17635	17635		12.241	0	1	76824			5149	5505	3444	3469	7182	7182					-0.04611196072664825
FSLELLVQE	9	Unmodified	_FSLELLVQE_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2953491210938	2	539.294965	1076.57538	0.83879	0.00045236	0.14408	7.7701E-05	0.98287	0.00053006	539.2946570947931	85.228	0.45479	85.251	85.035	85.49	0.023132					38	18	3	0	0	0	0.11547	1	20927	20927		29.082	3.6823	1	230170	+		5150	9276	3445	3470	7183	7183					0.04015190037625871
FSLENHSLD	9	Unmodified	_FSLENHSLD_					0	0	0			REV__ENSG00000132000|ENST00000588872|PODNL1	REV__ENSG00000132000|ENST00000588872|PODNL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2493896484375	2	531.248546	1060.48254	0.40501	0.00021516	1.3332	0.00070823	1.7382	0.0009234	531.2493202044263	68.112	0.55179	68.112	67.944	68.496	0					43	19	3	0	0	0	0.22912	1	15829	15829		18.146	2.2992	1	371060	+		5151	9101	3446	3471	7184	7184					-0.045283146957672216
FSLENHSLD	9	Unmodified	_FSLENHSLD_					0	0	0			REV__ENSG00000132000|ENST00000588872|PODNL1	REV__ENSG00000132000|ENST00000588872|PODNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.24951171875	2	531.248546	1060.48254	0.58912	0.00031297	1.2923	0.00068654	1.8814	0.00099951	531.249260029035	68.09	0.59717	68.153	67.935	68.532	0.063507					43	22	3	0	0	0	0.20358	1	15665	15665		18.146	2.2992	1	400620	+		5152	9101	3446	3471	7185	7185					-0.045283146957672216
FSLENHSLD	9	Unmodified	_FSLENHSLD_					0	0	0			REV__ENSG00000132000|ENST00000588872|PODNL1	REV__ENSG00000132000|ENST00000588872|PODNL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8131713867188	2	531.248546	1060.48254	0.58912	0.00031297	1.2923	0.00068654	1.8814	0.00099951	531.249260029035	68.09	0.59717	68.153	67.935	68.532	0.063507					43	22	3	0	0	0	0.22912	1	15762	15762		18.146	2.2992	1	400620	+		5153	9101	3446	3471	7186	7186					-0.045283146957672216
FSLETQVTI	9	Unmodified	_FSLETQVTI_					0	0	0		ENSG00000151704|ENST00000392666|KCNJ1;nc|ENSG00000151704|P48048-3|KCNJ1;nc|ENSG00000151704|P48048|KCNJ1	ENSG00000151704|ENST00000392666|KCNJ1	ENSG00000151704|ENST00000392666|KCNJ1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.802978515625	2	519.279315	1036.54408	0.31649	0.00016435	-0.9316	-0.00048376	-0.6151	-0.00031941	519.279386142969	68.496	0.75249	68.56	68.247	69	0.063507					38	28	2	0	0	0	0.1789	1	15738	15738		29.082	0	1	165420			5154	3470	3447	3472	7187	7187					0.027266170035318282
FSLETQVTI	9	Unmodified	_FSLETQVTI_					0	0	0		ENSG00000151704|ENST00000392666|KCNJ1;nc|ENSG00000151704|P48048-3|KCNJ1;nc|ENSG00000151704|P48048|KCNJ1	ENSG00000151704|ENST00000392666|KCNJ1	ENSG00000151704|ENST00000392666|KCNJ1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	519.279315	1036.54408	0.4771	0.00024775	-0.16683	-8.6631E-05	0.31027	0.00016112	519.2792456035778	68.687	0.35825	68.687	68.53	68.888	0	0.063546	0.00019609	NaN	32.786	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145360			5155	3470	3447	3472							0.027266170035318282
FSLFDATLQ	9	Unmodified	_FSLFDATLQ_					0	0	0		MLH3|p.N369S|1|0.2|ENSG00000119684|chr14:75048550-75048550|T/C|missense_variant;nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	MLH3|p.N369S|1|0.2|ENSG00000119684|chr14:75048550-75048550|T/C|missense_variant	MLH3|p.N369S|1|0.2|ENSG00000119684|chr14:75048550-75048550|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.267822265625	2	521.266207	1040.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.592	1	44.592	44.092	45.092	0								0	0	0	0.20678	1	8680	8680		17.113	2.2746	1				5156	2080	3448	3473	7188	7188					-0.0007765216794268781
FSLFHASGVGF	11	Unmodified	_FSLFHASGVGF_					0	0	0			REV__ENST00000270066.10_1_19:44258808-44259084:-|nuORF	REV__ENST00000270066.10_1_19:44258808-44259084:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7921142578125	2	584.792924	1167.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.172	1	70.172	69.672	70.672	0								0	0	0	0.3155	1	16458	16458		9.3831	1.473	1		+		5157	11271	3449	3474	7189	7189					-0.005788546654230231
FSLHPGQPAYF	11	Unmodified	_FSLHPGQPAYF_					0	0	0			REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF	REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8766784667969	3	421.876746	1262.60841	0.36886	0.00015561	-0.40885	-0.00017248	-0.039986	-1.6869E-05	421.87654152667596	49.878	2.1607	49.878	49.34	51.501	0					203	75	5	0	0	0	0.37654	2	10333	10333;10582		9.2438	1.2984	1	1537200	+		5158	11450	3450	3475	7190;7191	7190					-0.012391831196964631
FSLHPGQPAYF	11	Unmodified	_FSLHPGQPAYF_					0	0	0			REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF	REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.877197265625	3	421.876746	1262.60841	0.061595	2.5985E-05	0.03538	1.4926E-05	0.096975	4.0911E-05	421.87677428500945	49.809	1.4583	49.882	49.594	51.052	0.07312					148	52	5	0	0	0	0.37654	4	10077	10077;10176;10220;10430		9.2438	1.2984	1	2397000	+		5159	11450	3450	3475	7192;7193;7194;7195	7192					-0.012391831196964631
FSLIIASYDA	10	Unmodified	_FSLIIASYDA_					0	0	0		nc|nan|Q8N4C9-2|C17orf78;ENSG00000278505|ENST00000615133|C17orf78	nc|nan|Q8N4C9-2|C17orf78	nc|nan|Q8N4C9-2|C17orf78	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2868041992188	2	550.28714	1098.55973	0.42722	0.0002351	-0.14255	-7.8441E-05	0.28468	0.00015666	550.2868154257857	87.486	0.4449	87.486	87.263	87.708	0					37	16	3	0	0	0	0.31496	1	21712	21712		13.906	3.0821	1	253360			5160	5762	3451	3476	7196	7196					0.01438903520556778
FSLMHTKQL	9	Unmodified	_FSLMHTKQL_					0	0	0		ENST00000263056.5_1_10:30726187-30726295:+|nuORF	ENST00000263056.5_1_10:30726187-30726295:+|nuORF	ENST00000263056.5_1_10:30726187-30726295:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7955932617188	2	552.797152	1103.57975	0.31315	0.00017311	-2.541	-0.0014046	-2.2278	-0.0012315	552.7958735260538	49.827	0.55871	49.827	49.621	50.18	0					30	19	2	0	0	0	0.22344	1	10278	10278		15.847	1.9411	1	135610			5161	5875	3452	3477	7197	7197					0.0321037597952909
FSLPSSWDY	9	Unmodified	_FSLPSSWDY_					0	0	0		ENST00000607222.1_1_1:1550199-1550712:-|nuORF;ENST00000512931.5_1_4:81256922-81570142:+|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.77490234375	2	551.248015	1100.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.77	1	104.81	104.31	105.31	0.034004								0	0	0	0.2722	1	26796	26796		4.756	1.1595	1				5162	6922	3453	3478	7198	7198					-0.06474529064666967
FSLSSSMLL	9	Unmodified	_FSLSSSMLL_					0	0	0		ENST00000271690.12_1_1:150597354-150597492:-|nuORF	ENST00000271690.12_1_1:150597354-150597492:-|nuORF	ENST00000271690.12_1_1:150597354-150597492:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.75738525390625	2	492.757161	983.499769	0.33018	0.0001627	-0.33413	-0.00016465	-0.0039583	-1.9505E-06	492.7569709063888	82.916	0.48841	82.938	82.705	83.194	0.021751					22	16	2	0	0	0	0.18364	1	20207	20207		20.454	1.1966	1	78471			5163	5912	3454	3479	7199	7199					0.007358895857009884
FSLTLQNEIC	10	Unmodified	_FSLTLQNEIC_					0	0	0			REV__ENSG00000196267|ENST00000682614|ZNF836	REV__ENSG00000196267|ENST00000682614|ZNF836	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.270751953125	2	584.289356	1166.56416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.762	1	91.798	91.298	92.298	0.03653								0	0	0	0.33215	1	22881	22881		9.3831	0.78985	1		+		5164	10811	3455	3480	7200	7200					-0.012459553281814806
FSLTYDFGF	9	Unmodified	_FSLTYDFGF_					0	0	0			REV__ENST00000394054.6_1_3:101579486-101579642:+|nuORF	REV__ENST00000394054.6_1_3:101579486-101579642:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.24951171875	2	548.752933	1095.49131	0.48443	0.00026583	-2.8328	-0.0015545	-2.3484	-0.0012887	548.7521044079532	85.642	0.84377	85.642	85.362	86.205	0					86	36	4	0	0	0	0.16036	1	21139	21139		23.148	6.2061	1	907020	+		5165	11711	3456	3481	7201	7201					-0.052613410592812215
FSLYTCVLE	9	Unmodified	_FSLYTCVLE_					0	0	0		ENSG00000124602|ENST00000244565|UNC5CL	ENSG00000124602|ENST00000244565|UNC5CL	ENSG00000124602|ENST00000244565|UNC5CL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.3273315429688	2	537.762443	1073.51033	0.44747	0.00024063	0.91365	0.00049133	1.3611	0.00073196	537.7627350826815	94.853	0.40656	94.891	94.765	95.172	0.038567					31	16	3	0	0	0	0.2446	1	23906	23906		7.2892	0	1	77111			5166	2265	3457	3482	7202	7202					-0.02348127759887575
FSMQINYFK	9	Unmodified	_FSMQINYFK_					0	0	0		ENST00000334512.9_1_10:81074272-81074494:+|nuORF	ENST00000334512.9_1_10:81074272-81074494:+|nuORF	ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.785888671875	2	589.289159	1176.56377	0.13081	7.7084E-05	-1.6641	-0.00098062	-1.5333	-0.00090354	589.2879726022093	106.32	0.37218	106.32	106.17	106.54	0					41	34	2	0	0	0	0.25579	1	27424	27424		4.3292	0	1	68818			5167	6070	3458	3483	7203	7203					-0.017453302573812834
FSNGPCRGSKF	11	Unmodified	_FSNGPCRGSKF_					0	0	0			REV__ENST00000395264.3_1_19:2389783-2414036:+|nuORF	REV__ENST00000395264.3_1_19:2389783-2414036:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.2835693359375	2	600.28494	1198.55533	0.62823	0.00037711	-1.6013	-0.00096126	-0.97311	-0.00058414	600.2837838079844	67.696	0.98436	67.759	67.469	68.454	0.063507					58	35	2	0	0	0	0.2498	1	15542	15542		23.79	2.1996	1	437330	+		5168	10446	3459	3484	7204	7204					-0.03600884173988561
FSNHPKMEM	9	Unmodified	_FSNHPKMEM_					0	0	0		ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.805419921875	2	560.749344	1119.48414	0.4169	0.00023378	0.14316	8.0277E-05	0.56006	0.00031405	560.749137892942	82.595	0.95461	82.617	82.27	83.225	0.021744					66	33	3	0	0	0	0.25376	1	20231	20231		6.2058	0.47393	1	232680			5169	5493	3460	3485	7205	7205					-0.07082720203015924
FSNLNELQF	9	Unmodified	_FSNLNELQF_					0	0	0		ENSG00000243729|ENST00000641768|OR5V1	ENSG00000243729|ENST00000641768|OR5V1	ENSG00000243729|ENST00000641768|OR5V1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.27490234375	2	556.274564	1110.53457	0.7206	0.00040085	-0.11688	-6.5017E-05	0.60372	0.00033583	556.2746342334735	53.789	0.62266	53.855	53.597	54.22	0.06543					41	25	2	0	0	0	0.19398	1	11368	11368		19.257	4.4187	1	240750			5170	5662	3461	3486	7206	7206					-0.016271512820139833
FSNYPVGNSQY	11	Unmodified	_FSNYPVGNSQY_					0	0	0		ENST00000580958.5_1_18:23598320-23615185:-|nuORF	ENST00000580958.5_1_18:23598320-23615185:-|nuORF	ENST00000580958.5_1_18:23598320-23615185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.86212158203125	3	425.859532	1274.55677	0.27157	0.00011565	4.4299	0.0018865	4.7015	0.0020022	425.86192103973883	78.433	0.31142	78.463	78.253	78.564	0.030151					20	10	3	0	0	0	0.40796	1	18824	18824		1.0136	0	1	90679			5171	7218	3462	3487	7207	7207					-0.06952971604232516
FSPAEAEGPAL	11	Unmodified	_FSPAEAEGPAL_					0	0	0			REV__ENST00000601048.5_2_19:48281862-48283988:+|nuORF	REV__ENST00000601048.5_2_19:48281862-48283988:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7793579101562	2	544.766571	1087.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.217	1	90.217	89.717	90.717	0								0	0	0	0.23525	1	22569	22569		22.736	5.6497	1		+		5172	12623	3463	3488	7208	7208					-0.021668575189096373
FSPDGQLAR	9	Unmodified	_FSPDGQLAR_					0	0	0			REV__ENST00000471499.5_1_20:3758861-3759496:-|nuORF	REV__ENST00000471499.5_1_20:3758861-3759496:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.75372314453125	2	495.753798	989.493044	0.19571	9.7023E-05	-0.52167	-0.00025862	-0.32596	-0.00016159	495.753709819472	34.812	0.79929	34.812	34.535	35.334	0					54	29	3	0	0	0	0.24366	1	5731	5731		13.042	0	1	65636	+		5173	8415	3464	3489	7209	7209					-0.0021228725066748666
FSPLHLSFI	9	Unmodified	_FSPLHLSFI_					0	0	0			REV__ENST00000492185.5_1_6:31921790-31922695:-|nuORF	REV__ENST00000492185.5_1_6:31921790-31922695:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7947387695312	2	530.794935	1059.57532	0.50708	0.00026915	-0.27179	-0.00014427	0.23529	0.00012489	530.7946593697222	78.387	0.57396	78.418	78.138	78.712	0.030159					34	19	3	0	0	0	0.18479	1	18817	18817		26.884	5.137	1	136380	+		5174	12134	3465	3490	7210	7210					0.047912348282807216
FSPPLLTVF	9	Unmodified	_FSPPLLTVF_					0	0	0			REV__chr12:119803389-119822820|475|13.17|0.78|4.07|-|0|CIT,CIT|1	REV__chr12:119803389-119822820|475|13.17|0.78|4.07|-|0|CIT,CIT|1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7915344238281	2	510.791861	1019.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.99	1	103.99	103.49	104.49	0								0	0	0	0.20792	1	26743	26743		16.942	2.3606	1		+		5175	7780	3466	3491	7211	7211					0.06016716596764127
FSPRHRDFF	9	Unmodified	_FSPRHRDFF_					0	0	0			REV__ENSG00000104848|ENST00000221444|KCNA7	REV__ENSG00000104848|ENST00000221444|KCNA7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7684326171875	2	604.801614	1207.58868	0.67569	0.00040866	2.0768	0.001256	2.7525	0.0016647	604.8027094123177	59.904	0.72467	59.904	59.758	60.483	0					35	25	2	0	0	0	0.24263	1	13493	13493		12.532	3.9383	1	81478	+		5176	8515	3467	3492	7212	7212					-0.006815143397943757
FSQEERMA	8	Unmodified	_FSQEERMA_					0	0	0		ENSG00000172006|ENST00000317243|ZNF554	ENSG00000172006|ENST00000317243|ZNF554	ENSG00000172006|ENST00000317243|ZNF554	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.22308349609375	2	499.224017	996.43348	0.40726	0.00020331	-2.3252	-0.0011608	-1.9179	-0.00095748	499.2227722637506	76.247	0.30753	76.247	76.137	76.445	0					18	12	2	0	0	0	0.4433	1	18331	18331		20.454	1.0146	1	431190			5177	4476	3468	3493	7213	7213					-0.06487926256352239
FSQFVSFVV	9	Unmodified	_FSQFVSFVV_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.3079223632812	2	530.279118	1058.54368	0.51236	0.00027169	-1.5916	-0.00084398	-1.0792	-0.00057228	530.2782473061534	92.074	0.81984	92.074	91.559	92.379	0					39	30	2	0	0	0	0.23975	1	23158	23158		14.838	0.93222	1	174610	+		5178	9987	3469	3494	7214	7214					0.01675242074338712
FSQRAEVL	8	Unmodified	_FSQRAEVL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.25860595703125	2	475.258717	948.50288	-0.25482	-0.00012111	-0.33868	-0.00016096	-0.59351	-0.00028207	475.25849552034464	44.72	0.6728	44.808	44.538	45.211	0.087543					50	24	3	0	0	0	0.51415	1	8627	8627		10.824	0	1	156390			5179	2205	3470	3495	7215	7215					0.026569007546981993
FSRCFRDTT	9	Unmodified	_FSRCFRDTT_					0	0	0		ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.764404296875	2	566.76384	1131.51313	-0.1276	-7.232E-05	0.38036	0.00021557	0.25275	0.00014325	566.7640374860371	30.718	0.51615	30.793	30.647	31.163	0.075405					70	28	3	0	0	0	0.33978	1	4352	4352		1.4819	0.79152	1	84885			5180	2071	3471	3496	7216	7216					-0.0473685958236274
FSRKSSLTCHH	11	Unmodified	_FSRKSSLTCHH_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8825378417969	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.363	1	92.4	91.9	92.9	0.03653								0	0	0	0.33867	1	23062	23062		1.2148	0.51716	1				5181	5361	3472	3497	7217	7217					-0.008861213626232711
FSRLTALTL	9	Unmodified	_FSRLTALTL_					0	0	0		ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2890930175781	2	511.305667	1020.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.688	1	91.688	91.188	92.188	0								0	0	0	0.16041	1	23018	23018		24.021	3.5669	1				5182	4542	3473	3498	7218	7218					0.08730619856976318
FSRSFSIWT	9	Unmodified	_FSRSFSIWT_					0	0	0			REV__ENST00000514328.5_2_4:114452409-114458504:-|nuORF	REV__ENST00000514328.5_2_4:114452409-114458504:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7691650390625	2	565.785099	1129.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.577	1	91.577	91.077	92.077	0								0	0	0	0.21527	1	22984	22984		15.847	5.7733	1		+		5183	12272	3474	3499	7219	7219					-0.003951411825028117
FSRSFSIWT	9	Unmodified	_FSRSFSIWT_					0	0	0			REV__ENST00000514328.5_2_4:114452409-114458504:-|nuORF	REV__ENST00000514328.5_2_4:114452409-114458504:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.768798828125	2	565.785099	1129.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.549	1	91.584	91.084	92.084	0.035446								0	0	0	0.23884	1	22816	22816		11.64	1.4569	1		+		5184	12272	3474	3499	7220	7220					-0.003951411825028117
FSRVFVTMEA	10	Unmodified	_FSRVFVTMEA_					0	0	0			REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7804565429688	2	593.799891	1185.58523	0.53893	0.00032002	-2.0229	-0.0012012	-1.484	-0.0008812	593.797717226175	64.64	1.0896	64.64	64.382	65.472	0					105	39	4	0	0	0	0.38104	1	14726	14726		13.906	3.0821	1	385490	+		5185	8055	3475	3500	7221	7221					-0.00013945228624834272
FSSALDEIEEL	11	Unmodified	_FSSALDEIEEL_					0	0	0		ENSG00000179833|ENST00000313349|SERTAD2	ENSG00000179833|ENST00000313349|SERTAD2	ENSG00000179833|ENST00000313349|SERTAD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2996826171875	2	626.800808	1251.58706	-0.088671	-5.5579E-05	-0.99651	-0.00062461	-1.0852	-0.00068019	627.3013460106204	73.596	0.55484	73.596	73.422	73.977	0					33	19	3	0	0	0	0.23934	3	17505	17505;17539;17557		24.991	3.6059	1	195220			5186	4789	3476	3501	7222;7223;7224	7222					-0.028666577297144613
FSSALDEIEEL	11	Unmodified	_FSSALDEIEEL_					0	0	0		ENSG00000179833|ENST00000313349|SERTAD2	ENSG00000179833|ENST00000313349|SERTAD2	ENSG00000179833|ENST00000313349|SERTAD2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	626.800808	1251.58706	0.31748	0.000199	-0.36756	-0.00023039	-0.050087	-3.1394E-05	626.800967333678	73.515	0.36626	73.568	73.441	73.808	0.052567	-0.014005	0.00031149	NaN	24.991	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155500			5187	4789	3476	3501							-0.028666577297144613
FSSFCMKSSES	11	Unmodified	_FSSFCMKSSES_					0	0	0		ENST00000369478.3_1_1:117297020-117297110:+|nuORF	ENST00000369478.3_1_1:117297020-117297110:+|nuORF	ENST00000369478.3_1_1:117297020-117297110:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.2713623046875	2	620.254656	1238.49476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.008	1	49.084	48.584	49.584	0.076607								0	0	0	0.32927	1	9880	9880		4.5289	0.93237	1				5188	6194	3477	3502	7225	7225					-0.11494782339241283
FSSFSPLLI	9	Unmodified	_FSSFSPLLI_					0	0	0			REV__ENST00000487869.1_1_21:40752343-40763801:+|nuORF	REV__ENST00000487869.1_1_21:40752343-40763801:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.781005859375	2	505.781493	1009.54843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.436	1	87.436	86.936	87.936	0								0	0	0	0.17567	1	21729	21729		21.747	0	1		+		5189	10552	3478	3503	7226	7226					0.04404126217104931
FSSIFRVPF	9	Unmodified	_FSSIFRVPF_					0	0	0		ENST00000540458.5_1_12:6956081-6956183:+|nuORF	ENST00000540458.5_1_12:6956081-6956183:+|nuORF	ENST00000540458.5_1_12:6956081-6956183:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2868041992188	2	550.300384	1098.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.381	1	87.381	86.881	87.881	0								0	0	0	0.19239	1	21712	21712		19.257	2.1441	1				5190	7060	3479	3504	7227	7227					0.040866372025675446
FSSLAYWVF	9	Unmodified	_FSSLAYWVF_					0	0	0		ENST00000605589.1_1_1:184355274-184355667:-|nuORF	ENST00000605589.1_1_1:184355274-184355667:-|nuORF	ENST00000605589.1_1_1:184355274-184355667:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8222045898438	2	560.279118	1118.54368	0.54557	0.00030567	-2.1441	-0.0012013	-1.5986	-0.00089565	560.2784142657157	63.425	0.26195	63.425	63.212	63.474	0					10	8	2	0	0	0	0.2298	1	14343	14343		11.64	0	1	66966			5191	7308	3480	3505	7228	7228					-0.010847579256960671
FSSLQHLDL	9	Unmodified	_FSSLQHLDL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.A993V|1|0.12|ENSG00000179583|chr16:10916375-10916375|C/T|missense_variant;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.3079223632812	2	530.277106	1058.53966	0.45938	0.0002436	2.3335	0.0012374	2.7928	0.001481	530.2782397869412	92.099	0.7359	92.136	91.694	92.429	0.036522					34	25	2	0	0	0	0.16392	1	22996	22996		32.786	3.7041	1	151870			5192	4780	3481	3506	7229	7229					0.012731525806202626
FSSNFIKIS	9	Unmodified	_FSSNFIKIS_					0	0	0		ENST00000557320.5_1_14:96999700-97000015:+|nuORF	ENST00000557320.5_1_14:96999700-97000015:+|nuORF	ENST00000557320.5_1_14:96999700-97000015:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7818603515625	2	521.782025	1041.5495	-0.20447	-0.00010669	-0.010148	-5.2952E-06	-0.21461	-0.00011198	521.7818718929373	45.5	0.4542	45.5	45.328	45.782	0					39	15	3	0	0	0	0.20358	1	8988	8988		18.146	1.9972	1	247920			5193	7133	3482	3507	7230	7230					0.030383405859765844
FSSNFIKIS	9	Unmodified	_FSSNFIKIS_					0	0	0		ENST00000557320.5_1_14:96999700-97000015:+|nuORF	ENST00000557320.5_1_14:96999700-97000015:+|nuORF	ENST00000557320.5_1_14:96999700-97000015:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7820434570312	2	521.782025	1041.5495	-0.010731	-5.5991E-06	-0.20399	-0.00010644	-0.21472	-0.00011204	521.7817691887846	45.418	0.45403	45.506	45.321	45.775	0.08754					45	16	4	0	0	0	0.24767	1	8832	8832		13.042	0.51092	1	170200			5194	7133	3482	3507	7231	7231					0.030383405859765844
FSSTGLCLLT	10	Unmodified	_FSSTGLCLLT_					0	0	0		sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2552490234375	2	521.267893	1040.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.225	1	45.225	44.725	45.725	0								0	0	0	0.32828	1	8871	8871		13.906	2.2658	1				5195	13385	3483	3508	7232	7232					0.0025927461438186583
FSSTQLSFF	9	Unmodified	_FSSTQLSFF_					0	0	0		sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2581176757812	2	532.258382	1062.50221	0.41221	0.0002194	-0.046568	-2.4786E-05	0.36564	0.00019462	532.258323073333	50.18	0.45672	50.253	50.069	50.526	0.07312					29	15	3	0	0	0	0.03472	1	10244	10244		47.749	9.5731	1	175400			5196	13393	3484	3509	7233	7233					-0.026539386849890434
FSSVKRPY	8	Unmodified	_FSSVKRPY_					0	0	0		ENST00000413221.6_1_5:111496621-111496921:+|nuORF	ENST00000413221.6_1_5:111496621-111496921:+|nuORF	ENST00000413221.6_1_5:111496621-111496921:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2464904785156	2	492.269084	982.523616	-0.13783	-6.7849E-05	0.14247	7.0132E-05	0.004636	2.2822E-06	492.2691008656787	42.79	0.45924	42.879	42.703	43.162	0.089764					24	17	2	0	0	0	0.3576	1	8070	8070		8.5933	2.8329	1	60108			5197	6408	3485	3510	7234	7234					0.03165491134370768
FSSVYEHLI	9	Unmodified	_FSSVYEHLI_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3334350585938	2	547.779482	1093.54441	0.38839	0.00021275	1.6231	0.00088908	2.0115	0.0011018	547.7804565691861	96.072	0.36437	96.112	95.891	96.256	0.039772					33	18	2	0	0	0	0.2446	1	24150	24150		11.64	2.2929	1	185560			5198	3857	3486	3511	7235	7235					0.0013803672338781325
FSTCSSHLTV	10	Unmodified	_FSTCSSHLTV_					0	0	0		OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant;ENSG00000172772|ENST00000395079|OR10W1;ENSG00000197437|ENST00000642119|OR13G1;ENSG00000169214|ENST00000641470|OR6F1;ENSG00000177476|ENST00000320002|OR2G3;ENSG00000150261|ENST00000279783|OR8K1;ENSG00000171481|ENST00000304820|OR1L3;ENSG00000256574|ENST00000553795|OR13A1;nc|ENSG00000180068|P47883|OR3A4P	OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant	OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2687377929688	2	541.252774	1080.491	0.11874	6.4269E-05	-0.27006	-0.00014617	-0.15132	-8.1903E-05	541.2526312721767	33.51	0.97823	33.585	33.327	34.305	0.074326					91	39	4	0	0	0	0.46656	1	5390	5390		1.6526	0	1	306480			5199	3424	3487	3512	7236	7236					-0.04603084050813777
FSTHTCTEVTP	11	Unmodified	_FSTHTCTEVTP_					0	0	0		ENST00000382252.5_1_7:6694764-6695430:+|nuORF	ENST00000382252.5_1_7:6694764-6695430:+|nuORF	ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.1865234375	3	408.185139	1221.53359	0.694	0.00028328	3.413	0.0013932	4.107	0.0016764	408.1865237668895	93.76	0.27979	93.76	93.599	93.879	0					19	9	3	0	0	0	0.38315	1	23659	23659		6.6235	0.43161	1	170580			5200	6301	3488	3513	7237	7237					-0.06831733713215726
FSTHTCTEVTP	11	Unmodified	_FSTHTCTEVTP_					0	0	0		ENST00000382252.5_1_7:6694764-6695430:+|nuORF	ENST00000382252.5_1_7:6694764-6695430:+|nuORF	ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	408.185139	1221.53359	0.23291	9.5071E-05	5.0254	0.0020513	5.2583	0.0021464	408.1872421706058	93.817	0.39838	93.855	93.534	93.933	0.03788	0.047757	0.0015033	NaN	6.6235	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141080			5201	6301	3488	3513							-0.06831733713215726
FSTPVGQCL	9	Unmodified	_FSTPVGQCL_					0	0	0		ENST00000579586.1_1_17:17810817-17875627:-|nuORF;TOM1L2-ATPAF2|1|fusion;ENST00000537091.2_1_17:17772601-17875627:-|nuORF;nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;nc|ENSG00000175662|Q6ZVM7-5|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2	ENST00000579586.1_1_17:17810817-17875627:-|nuORF	ENST00000579586.1_1_17:17810817-17875627:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.198486328125	2	476.233853	950.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.316	1	86.341	85.841	86.841	0.025169								0	0	0	0.27427	1	21226	21226		4.3292	1.44	1				5202	4634	3489	3514	7238	7238					-0.02405550245600807
FSTVLGLLTL	10	Unmodified	_FSTVLGLLTL_					0	0	0			REV__ENST00000540468.5_1_2:73480008-73480116:+|nuORF	REV__ENST00000540468.5_1_2:73480008-73480116:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.3055419921875	2	532.323525	1062.6325	0.56031	0.00029827	-0.61994	-0.00033001	-0.059631	-3.1743E-05	532.3229432898606	73.969	0.30086	74.018	73.902	74.203	0.048546					16	10	2	0	0	0	0.24016	1	17479	17479		29.082	7.5446	1	189690	+		5203	12398	3490	3515	7239	7239					0.10368657313983931
FSTWHRDL	8	Unmodified	_FSTWHRDL_					0	0	0			REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C	REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2493896484375	2	531.261791	1060.50903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.099	1	68.099	67.599	68.599	0								0	0	0	0.38822	1	15829	15829		10.824	0.024421	1		+		5204	9464	3491	3516	7240	7240					-0.018805810137791923
FSVAKTNII	9	Unmodified	_FSVAKTNII_					0	0	0			REV__ENSG00000185100|ENST00000330877|ADSS1	REV__ENSG00000185100|ENST00000330877|ADSS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7925720214844	2	496.792392	991.570232	0.52302	0.00025983	0.13125	6.5206E-05	0.65427	0.00032504	496.7923388560864	63.955	0.54924	64.026	63.797	64.346	0.071014					31	18	2	0	0	0	0.27332	1	14425	14425		10.074	10.074	1	261260	+		5205	10659	3492	3517	7241	7241					0.07410930965670559
FSVAPFDQNL	10	Unmodified	_FSVAPFDQNL_					0	0	0		nc|ENSG00000090686|Q86UV5-6|USP48;ENST00000464577.1_1_1:22013654-22030763:-|nuORF;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-6|USP48	nc|ENSG00000090686|Q86UV5-6|USP48	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.28271484375	2	569.282389	1136.55022	0.57916	0.00032971	0.19149	0.00010901	0.77065	0.00043872	569.2823611383278	82.109	1.7045	82.109	81.374	83.079	0					99	59	2	0	0	0	0.25276	1	20162	20162		27.629	2.6378	1	233540			5206	1047	3493	3518	7242	7242					-0.012588647649408813
FSVGVAWAPLD	11	Unmodified	_FSVGVAWAPLD_					0	0	0		ENSG00000100473|ENST00000396618|COCH	ENSG00000100473|ENST00000396618|COCH	ENSG00000100473|ENST00000396618|COCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3011474609375	2	581.300581	1160.58661	0.55726	0.00032393	-0.11958	-6.9512E-05	0.43768	0.00025442	581.3005214245434	88.379	0.43069	88.379	88.232	88.663	0					24	16	2	0	0	0	0.32422	1	22038	22038		15.248	6.5031	1	138400			5207	1202	3494	3519	7243	7243					0.012740121317619924
FSVLHLPHLS	10	Unmodified	_FSVLHLPHLS_					0	0	0			REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF	REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.2894897460938	2	575.324391	1148.63423	0.58631	0.00033732	-2.4494	-0.0014092	-1.8631	-0.0010719	575.3244130580043	67.752	0.66837	67.815	67.664	68.333	0.063507					39	23	3	0	0	0	0.31643	1	15528	15528		9.3831	1.473	1	187600	+		5208	12022	3495	3520	7244	7244					0.06585711122625071
FSVLHLPHLS	10	Unmodified	_FSVLHLPHLS_					0	0	0			REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF	REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	575.324391	1148.63423	0.37038	0.00021309	-2.291	-0.0013181	-1.9206	-0.001105	575.3247429548832	67.83	0.54762	67.83	67.61	68.158	0	0.0076751	9.7456E-05	NaN	9.3831	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210690	+		5209	12022	3495	3520							0.06585711122625071
FSVPELVFV	9	Unmodified	_FSVPELVFV_					0	0	0			REV__ENST00000463653.1_1_2:241528810-241528954:+|nuORF	REV__ENST00000463653.1_1_2:241528810-241528954:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7713012695312	2	518.789318	1035.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.013	1	88.043	87.543	88.543	0.030037								0	0	0	0.25361	1	21739	21739		8.5933	1.8701	1		+		5210	11975	3496	3521	7245	7245					0.047724127341325584
FSVYCQCRR	9	Unmodified	_FSVYCQCRR_					0	0	0		ENSG00000123066|ENST00000281928|MED13L;ENST00000548694.1_1_12:116413318-116418680:-|nuORF	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2698974609375	2	581.268235	1160.52192	0.74142	0.00043097	2.7246	0.0015837	3.466	0.0020147	581.2699065644291	81.158	0.48337	81.182	80.91	81.393	0.023605					22	16	2	0	0	0	0.19398	1	19679	19679		19.257	1.1106	1	152830			5211	2203	3497	3522	7246	7246					-0.051922092175345824
FSVYCQCRR	9	Unmodified	_FSVYCQCRR_					0	0	0		ENSG00000123066|ENST00000281928|MED13L;ENST00000548694.1_1_12:116413318-116418680:-|nuORF	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	581.268235	1160.52192	0.92822	0.00053954	2.0331	0.0011818	2.9614	0.0017213	581.2696093476419	81.209	0.40526	81.209	81.056	81.461	0	0.013766	-0.00049798	NaN	19.257	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143950			5212	2203	3497	3522							-0.051922092175345824
FSWVDSATTF	10	Unmodified	_FSWVDSATTF_					0	0	0			REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.766845703125	2	580.766571	1159.51859	0.47882	0.00027808	-0.65662	-0.00038134	-0.1778	-0.00010326	580.766359510227	85.836	0.47393	85.836	85.605	86.079	0					36	19	3	0	0	0	0.42335	1	21243	21243		9.3831	3.1773	1	260710	+		5213	9552	3498	3523	7247	7247					-0.054788575189149924
FSWVDSATTF	10	Unmodified	_FSWVDSATTF_					0	0	0			REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7670288085938	2	580.766571	1159.51859	0.69377	0.00040292	-0.82088	-0.00047674	-0.12711	-7.3822E-05	580.7662526060244	85.864	0.45796	85.889	85.631	86.088	0.025169					27	16	2	0	0	0	0.38912	1	21087	21087		13.042	6.8367	1	297140	+		5214	9552	3498	3523	7248	7248					-0.054788575189149924
FSWVDSATTF	10	Unmodified	_FSWVDSATTF_					0	0	0			REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	580.766571	1159.51859	0.47882	0.00027808	-0.65662	-0.00038134	-0.1778	-0.00010326	580.766359510227	85.836	0.47393	85.836	85.605	86.079	0	-0.026655	9.6648E-05	NaN	13.042	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260710	+		5215	9552	3498	3523							-0.054788575189149924
FSWVDSATTF	10	Unmodified	_FSWVDSATTF_					0	0	0			REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	580.766571	1159.51859	0.69377	0.00040292	-0.82088	-0.00047674	-0.12711	-7.3822E-05	580.7662526060244	85.864	0.45796	85.889	85.631	86.088	0.025169	0.026655	-9.4139E-05	NaN	13.042	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297140	+		5216	9552	3498	3523							-0.054788575189149924
FSYDHGPS	8	Unmodified	_FSYDHGPS_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.162109375	2	455.1905	908.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.455	1	85.48	84.98	85.98	0.025169								0	0	0	0.38822	1	20965	20965		5.2307	2.3415	1		+		5217	10775	3499	3524	7249	7249					-0.09140213475802739
FSYEKFNF	8	Unmodified	_FSYEKFNF_					0	0	0		ENSG00000107518|ENST00000355044|ATRNL1;ENST00000424738.1_1_10:117226695-117357303:+|nuORF	ENSG00000107518|ENST00000355044|ATRNL1	ENSG00000107518|ENST00000355044|ATRNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2691040039062	2	541.2531	1080.49165	0.11874	6.4269E-05	-0.8723	-0.00047214	-0.75356	-0.00040787	541.2526312721767	33.51	0.97823	33.585	33.327	34.305	0.074326					91	39	4	0	0	0	0.53345	1	5318	5318		5.7604	0.46354	1	306480			5218	1557	3500	3525	7250	7250					-0.045379213394198814
FSYKRRKSR	9	Unmodified	_FSYKRRKSR_					0	0	0			REV__ENST00000508541.1_1_4:20618510-20620629:+|nuORF	REV__ENST00000508541.1_1_4:20618510-20620629:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.80078125	2	614.357088	1226.69962	-0.24651	-0.00015145	-3.1886	-0.001959	-3.4351	-0.0021104	614.3550770277434	33.999	0.28471	34.075	33.865	34.15	0.076244					16	11	2	0	0	0	0.25964	1	5321	5321		2.0598	0	1	14139	+		5219	9514	3501	3526	7251	7251					0.09534125368304558
FSYLLHLM	8	Unmodified	_FSYLLHLM_					0	0	0		ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2705688476562	2	512.270238	1022.52592	0.045784	2.3454E-05	1.4555	0.0007456	1.5013	0.00076906	512.2709380464544	105.82	0.69343	105.82	105.56	106.25	0					94	67	2	0	0	0	0.53817	1	27228	27228		2.5775	0	1	60120			5220	4839	3502	3527	7252	7252					0.01556203547829682
FSYLLHLM	8	Unmodified	_FSYLLHLM_					0	0	0		ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.270238	1022.52592	0.30966	0.00015863	1.3475	0.00069031	1.6572	0.00084894	512.2708864523919	106.14	0.072327	106.17	106.14	106.22	0.029732	0.17446	-9.6073E-05	NaN	2.5775	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30997			5221	4839	3502	3527							0.01556203547829682
FSYLTTEI	8	Unmodified	_FSYLTTEI_					0	0	0		nc|ENSG00000137251|Q9UJW2-2|TINAG;ENSG00000137251|ENST00000259782|TINAG	nc|ENSG00000137251|Q9UJW2-2|TINAG	nc|ENSG00000137251|Q9UJW2-2|TINAG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2501220703125	2	487.247483	972.480414	-0.26848	-0.00013082	-3.2668	-0.0015917	-3.5352	-0.0017225	487.24589742667064	58.833	0.88752	58.833	58.256	59.144	0					48	32	2	0	0	0	0.52924	1	12878	12878		8.5933	2.2392	1	773350			5222	2841	3503	3528	7253	7253					-0.006927434335921134
FSYSGRCF	8	Unmodified	_FSYSGRCF_					0	0	0		ENST00000360537.6_1_6:144262428-144262560:-|nuORF	ENST00000360537.6_1_6:144262428-144262560:-|nuORF	ENST00000360537.6_1_6:144262428-144262560:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2638854980469	2	483.710545	965.406537	0.044246	2.1402E-05	-3.929	-0.0019005	-3.8847	-0.0018791	483.70811548927156	47.02	0.50623	47.104	46.762	47.269	0.083096					27	19	3	0	0	0	0.3576	1	9299	9299		8.5933	0.68312	1	32455			5223	6155	3504	3529	7254	7254					-0.07754990076875856
FSYTISPYS	9	Unmodified	_FSYTISPYS_					0	0	0			REV__CHRNB3|p.F222S|1|0.5|ENSG00000147432|chr8:42731972-42731972|T/C|missense_variant	REV__CHRNB3|p.F222S|1|0.5|ENSG00000147432|chr8:42731972-42731972|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.75	2	532.75039	1063.48623	0.51469	0.0002742	-1.7267	-0.00091989	-1.212	-0.0006457	532.7495999349272	79.441	0.43291	79.441	79.188	79.621	0					30	14	3	0	0	0	0.12809	1	19308	19308		26.884	0.61551	1	301190	+		5224	7817	3505	3530	7255	7255					-0.042976449218940616
FSYTISPYS	9	Unmodified	_FSYTISPYS_					0	0	0			REV__CHRNB3|p.F222S|1|0.5|ENSG00000147432|chr8:42731972-42731972|T/C|missense_variant	REV__CHRNB3|p.F222S|1|0.5|ENSG00000147432|chr8:42731972-42731972|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7681274414062	2	532.75039	1063.48623	0.37209	0.00019823	-1.5353	-0.00081792	-1.1632	-0.00061969	532.7497284403181	79.339	0.52416	79.365	79.098	79.622	0.026428					31	18	2	0	0	0	0.1182	1	19157	19157		28.487	2.2187	1	165540	+		5225	7817	3505	3530	7256	7256					-0.042976449218940616
FTAAFFGRWY	10	Unmodified	_FTAAFFGRWY_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1;REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.30810546875	2	633.308741	1264.60293	0.41996	0.00026596	-2.1619	-0.0013691	-1.7419	-0.0011032	633.3074840621011	77.616	0.29247	77.651	77.587	77.88	0.034485					13	9	2	0	0	0	0.38912	1	18599	18599		13.042	3.6593	1	163270	+		5226	10756;8769	3506	3531	7257	7257					-0.01878861911450258
FTASFTSVSLC	11	Unmodified	_FTASFTSVSLC_					0	0	0		ENSG00000159905|ENST00000587682|ZNF221	ENSG00000159905|ENST00000587682|ZNF221	ENSG00000159905|ENST00000587682|ZNF221	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7615966796875	2	581.776082	1161.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.088	1	43.088	42.588	43.588	0								0	0	0	0.3074	1	8225	8225		12.241	0.74595	1				5227	3746	3507	3532	7258	7258					-0.03669644219485235
FTASFTSVSLC	11	Unmodified	_FTASFTSVSLC_					0	0	0		ENSG00000159905|ENST00000587682|ZNF221	ENSG00000159905|ENST00000587682|ZNF221	ENSG00000159905|ENST00000587682|ZNF221	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7617797851562	2	581.776082	1161.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.256	1	43.256	42.756	43.756	0								0	0	0	0.28642	1	8276	8276		16.149	1.7437	1				5228	3746	3507	3532	7259	7259					-0.03669644219485235
FTASIAPQLL	10	Unmodified	_FTASIAPQLL_					0	0	0		nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7930297851562	2	530.8055	1059.59645	0.36863	0.00019567	-0.32083	-0.0001703	0.047801	2.5373E-05	530.8053878703108	58.085	0.78314	58.085	57.434	58.217	0					50	27	2	0	0	0	0.31219	1	12798	12798		17.113	2.2746	1	112570			5229	7637	3508	3533	7260	7260					0.0690320013713972
FTASIAPQLL	10	Unmodified	_FTASIAPQLL_					0	0	0		nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7930297851562	2	530.8055	1059.59645	0.38329	0.00020345	-0.43274	-0.0002297	-0.049449	-2.6248E-05	530.8052663468185	57.786	0.72297	57.854	57.437	58.16	0.068371					47	26	2	0	0	0	0.39662	1	12626	12626		12.241	3.4953	1	153630			5230	7637	3508	3533	7261	7261					0.0690320013713972
FTASRCKK	8	Unmodified	_FTASRCKK_					0	0	0			REV__nc|ENSG00000154678|Q14123-3|PDE1C	REV__nc|ENSG00000154678|Q14123-3|PDE1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7554931640625	2	470.755287	939.496021	0.0215	1.0121E-05	1.5505	0.00072992	1.572	0.00074004	470.75594275444473	49.352	0.36528	49.352	49.143	49.508	0					23	12	2	0	0	0	0.53817	1	10114	10114		2.5775	0	1	100360	+		5231	12816	3509	3534	7262	7262					0.023852646024920432
FTASRCKK	8	Unmodified	_FTASRCKK_					0	0	0			REV__nc|ENSG00000154678|Q14123-3|PDE1C	REV__nc|ENSG00000154678|Q14123-3|PDE1C	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	470.755287	939.496021	0.0215	1.0121E-05	1.5505	0.00072992	1.572	0.00074004	470.75594275444473	49.352	0.36528	49.352	49.143	49.508	0	-0.0035558	9.9395E-05	NaN	2.5775	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100360	+		5232	12816	3509	3534							0.023852646024920432
FTAVKENV	8	Unmodified	_FTAVKENV_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2481689453125	2	454.247818	906.481082	0.028377	1.289E-05	0.11748	5.3363E-05	0.14585	6.6253E-05	454.2478238262909	32.994	0.42196	32.994	32.801	33.223	0					32	16	3	0	0	0	0.48462	2	5168	5168;5211		14.838	0	1	49328			5233	13545	3510	3535	7263;7264	7263					0.02410096006144613
FTAVKENV	8	Unmodified	_FTAVKENV_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.2478942871094	2	454.247818	906.481082	-0.13632	-6.1922E-05	0.28633	0.00013007	0.15002	6.8144E-05	454.2478114320143	32.918	0.30821	32.993	32.837	33.146	0.074322					28	11	3	0	0	0	0.50815	1	5038	5038		11.64	0	1	46588			5234	13545	3510	3535	7265	7265					0.02410096006144613
FTCKETSRPF	10	Unmodified	_FTCKETSRPF_					0	0	0		ENST00000477638.1_1_10:116354806-116370421:-|nuORF	ENST00000477638.1_1_10:116354806-116370421:-|nuORF	ENST00000477638.1_1_10:116354806-116370421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.8668212890625	3	405.865741	1214.57539	0.2824	0.00011462	2.1885	0.00088822	2.4709	0.0010028	406.2010935154246	39.303	0.5859	39.303	39.162	39.748	0					31	21	3	0	0	0	0.45627	2	7076	7076;7131		1.7423	0.41263	1	79229			5235	6721	3511	3536	7266;7267	7266					-0.023311332340426816
FTCKSCGR	8	Unmodified	_FTCKSCGR_					0	0	0		ENST00000469619.5_1_2:238402069-238419788:+|nuORF;nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	ENST00000469619.5_1_2:238402069-238419788:+|nuORF	ENST00000469619.5_1_2:238402069-238419788:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.3623046875	2	451.204573	900.394592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.834	1	12.834	12.334	13.334	0								0	0	0	0.38822	1	124	124		0.79363	0	1				5236	1917	3512	3537	7268	7268					-0.05958930091719594
FTDEESYSF	9	Unmodified	_FTDEESYSF_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7747192382812	2	562.724569	1123.43459	0.38491	0.0002166	0.58818	0.00033098	0.97309	0.00054758	562.7250312960086	91.764	0.7	91.8	91.586	92.286	0.036522					46	24	3	0	0	0	0.24635	1	22858	22858		10.824	6.4947	1	146990			5237	4579	3513	3538	7269	7269					-0.1221943340647158
FTDEESYSF	9	Unmodified	_FTDEESYSF_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.724569	1123.43459	0.48235	0.00027143	1.0051	0.00056561	1.4875	0.00083704	562.7249926090321	91.844	0.55269	91.844	91.584	92.136	0	0.021653	0.0002137	NaN	15.847	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211590			5238	4579	3513	3538							-0.1221943340647158
FTDSKRYE	8	Unmodified	_FTDSKRYE_					0	0	0		ENST00000591086.1_1_18:57684440-57684650:-|nuORF;ENSG00000139146|ENST00000337682|SINHCAF	ENST00000591086.1_1_18:57684440-57684650:-|nuORF	ENST00000591086.1_1_18:57684440-57684650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2508544921875	2	523.251089	1044.48762	-0.092799	-4.8557E-05	-0.15902	-8.321E-05	-0.25182	-0.00013177	523.250909082899	43.689	0.92522	43.778	43.555	44.48	0.088924					69	32	3	0	0	0	0.45211	1	8363	8363		19.257	0.88389	1	182410			5239	2950	3514	3539	7270	7270					-0.032840108331583906
FTDTVWIML	9	Unmodified	_FTDTVWIML_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7747192382812	2	563.286085	1124.55762	0.3498	0.00019704	-3.7749	-0.0021264	-3.4251	-0.0019293	563.2838110974421	91.702	0.24228	91.738	91.644	91.886	0.035789					10	8	2	0	0	0	0.2446	1	22858	22858		11.64	2.2929	1	103910	+		5240	9566	3515	3540	7271	7271					0.00032151511118172493
FTEFVVCMII	10	Unmodified	_FTEFVVCMII_					0	0	0			REV__ENST00000553333.1_3_14:54950713-54955331:-|nuORF	REV__ENST00000553333.1_3_14:54950713-54955331:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3040771484375	2	601.303421	1200.59229	0.37789	0.00022723	-0.35624	-0.00021421	0.021649	1.3018E-05	601.303692252082	86.068	2.0459	86.068	85.779	87.825	0					191	81	6	0	0	0	0.27354	1	21253	21253		25.399	3.6527	1	16469000	+		5241	12445	3516	3541	7272	7272					1.6513275795659865E-05
FTEFVVCMII	10	Unmodified	_FTEFVVCMII_					0	0	0			REV__ENST00000553333.1_3_14:54950713-54955331:-|nuORF	REV__ENST00000553333.1_3_14:54950713-54955331:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3036499023438	2	601.303421	1200.59229	0.53219	0.00032001	-0.51827	-0.00031164	0.013921	8.3707E-06	601.3035417171458	86.046	1.3758	86.071	85.773	87.149	0.025177					161	56	6	0	0	0	0.31616	1	21262	21262		10.074	2.7847	1	13489000	+		5242	12445	3516	3541	7273	7273					1.6513275795659865E-05
FTELSFTSF	9	Unmodified	_FTELSFTSF_					0	0	0		ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2762451171875	2	539.758215	1077.50188	0.67232	0.00036289	-0.37509	-0.00020246	0.29724	0.00016044	539.7582007597501	80.023	0.5257	80.05	79.884	80.41	0.026436					43	18	3	0	0	0	0.21398	1	19405	19405		16.942	4.4107	1	403060			5243	1746	3517	3542	7274	7274					-0.03377358404873121
FTFDAPYFVF	10	Unmodified	_FTFDAPYFVF_					0	0	0			REV__tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1	REV__tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.2974853515625	2	627.297507	1252.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.494	1	38.58	38.08	39.08	0.08688								0	0	0	0.34018	1	6713	6713		0	0	1		+		5244	13076	3518	3543	7275	7275					-0.03572506099794737
FTFGKKYIKPF	11	Unmodified	_FTFGKKYIKPF_					0	0	0		tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7243957519531	3	459.263941	1374.76999	0.12633	5.8019E-05	-3.4331	-0.0015767	-3.3068	-0.0015187	459.26223532390026	49.964	0.36725	50.037	49.896	50.263	0.07312					16	12	2	0	0	0	0.31089	1	10187	10187		2.6312	0.88896	1	66718			5245	13696	3519	3544	7276	7276					0.09759985913387936
FTFTPVSPLL	10	Unmodified	_FTFTPVSPLL_					0	0	0		ENST00000375036.6_2_17:74676527-74676626:-|nuORF	ENST00000375036.6_2_17:74676527-74676626:-|nuORF	ENST00000375036.6_2_17:74676527-74676626:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8187866210938	2	561.3157	1120.61685	0.57351	0.00032192	0.12697	7.1268E-05	0.70048	0.00039319	561.31567655439	98.709	0.494	98.709	98.597	99.091	0					42	31	2	0	0	0	0.31731	1	25261	25261		6.2058	1.8765	1	98303			5246	6238	3520	3545	7277	7277					0.06136370796957635
FTFTPVSPLL	10	Unmodified	_FTFTPVSPLL_					0	0	0		ENST00000375036.6_2_17:74676527-74676626:-|nuORF	ENST00000375036.6_2_17:74676527-74676626:-|nuORF	ENST00000375036.6_2_17:74676527-74676626:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	561.3157	1120.61685	0.6412	0.00035991	0.05682	3.1894E-05	0.69802	0.00039181	561.315548413359	98.533	0.17128	98.575	98.482	98.653	0.041939	-0.06699	-5.1321E-05	NaN	6.2058	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98467			5247	6238	3520	3545							0.06136370796957635
FTGELWPLLL	10	Unmodified	_FTGELWPLLL_					0	0	0		ENST00000426911.2_1_X:136067453-136067636:-|nuORF	ENST00000426911.2_1_X:136067453-136067636:-|nuORF	ENST00000426911.2_1_X:136067453-136067636:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.2684326171875	2	594.8368	1187.65905	0.47838	0.00028456	-2.9384	-0.0017479	-2.4601	-0.0014633	594.8350531899133	70.23	0.28349	70.23	70.067	70.351	0					15	10	2	0	0	0	0.31616	1	16447	16447		10.074	3.3508	1	153400			5248	6474	3521	3546	7278	7278					0.07272346205331814
FTGELWPLLL	10	Unmodified	_FTGELWPLLL_					0	0	0		ENST00000426911.2_1_X:136067453-136067636:-|nuORF	ENST00000426911.2_1_X:136067453-136067636:-|nuORF	ENST00000426911.2_1_X:136067453-136067636:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.267822265625	2	594.8368	1187.65905	0.35121	0.00020891	-2.774	-0.0016501	-2.4228	-0.0014412	594.8345126570468	70.182	0.31303	70.242	70.046	70.359	0.060562					20	13	2	0	0	0	0.30541	1	16311	16311		19.257	11.101	1	124110			5249	6474	3521	3546	7279	7279					0.07272346205331814
FTGVLFFFT	9	Unmodified	_FTGVLFFFT_					0	0	0		nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4;nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4	nc|ENSG00000111199|Q9HBA0-4|TRPV4	nc|ENSG00000111199|Q9HBA0-4|TRPV4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7838745117188	2	539.784036	1077.55352	0.15196	8.2023E-05	0.34524	0.00018636	0.4972	0.00026838	539.7840423732457	104.79	0.36788	104.79	104.6	104.96	0					66	35	3	0	0	0	0.30005	1	26995	26995		6.7232	2.3939	1	145530			5250	1692	3522	3547	7280	7280					0.01784430079737831
FTHANCFI	8	Unmodified	_FTHANCFI_					0	0	0		ENST00000358598.6_1_17:66526593-66526758:+|nuORF	ENST00000358598.6_1_17:66526593-66526758:+|nuORF	ENST00000358598.6_1_17:66526593-66526758:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.72076416015625	2	476.720913	951.427273	0.098404	4.6911E-05	-0.11184	-5.3318E-05	-0.01344	-6.4069E-06	476.7207466352073	87.407	0.87396	87.407	87.211	88.085	0					48	31	2	0	0	0	0.53817	1	21696	21696		2.5775	0.27475	1	150830			5251	6140	3523	3548	7281	7281					-0.05038399697230034
FTHANCFI	8	Unmodified	_FTHANCFI_					0	0	0		ENST00000358598.6_1_17:66526593-66526758:+|nuORF	ENST00000358598.6_1_17:66526593-66526758:+|nuORF	ENST00000358598.6_1_17:66526593-66526758:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	476.720913	951.427273	-0.049116	-2.3415E-05	-0.15538	-7.4075E-05	-0.2045	-9.7489E-05	476.7207799892679	87.528	1.0711	87.558	87.096	88.167	0.030037	0.075284	-1.363E-05	NaN	2.5775	62	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147520			5252	6140	3523	3548							-0.05038399697230034
FTIYNNMF	8	Unmodified	_FTIYNNMF_					0	0	0		nc|ENSG00000101981|P00740-2|F9;ENSG00000101981|ENST00000218099|F9	nc|ENSG00000101981|P00740-2|F9	nc|ENSG00000101981|P00740-2|F9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2540893554688	2	525.241678	1048.4688	0.26067	0.00013691	2.2605	0.0011873	2.5211	0.0013242	525.242901430829	55.613	0.27055	55.678	55.517	55.787	0.065128					17	9	2	0	0	0	0.50159	1	11877	11877		12.532	0.89125	1	70808			5253	1286	3524	3549	7282	7282					-0.05349263728567166
FTIYNNMF	8	Unmodified	_FTIYNNMF_					0	0	0		nc|ENSG00000101981|P00740-2|F9;ENSG00000101981|ENST00000218099|F9	nc|ENSG00000101981|P00740-2|F9	nc|ENSG00000101981|P00740-2|F9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.241678	1048.4688	0.26067	0.00013691	2.2605	0.0011873	2.5211	0.0013242	525.242901430829	55.613	0.27055	55.678	55.517	55.787	0.065128	0.020853	3.4075E-05	NaN	12.532	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70808			5254	1286	3524	3549							-0.05349263728567166
FTKEWTEEL	9	Unmodified	_FTKEWTEEL_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.7874145507812	2	591.787504	1181.56045	0.29487	0.0001745	-0.015815	-9.3589E-06	0.27906	0.00016514	591.7871597326703	73.306	0.71435	73.358	73.093	73.808	0.052574					44	27	2	0	0	0	0.20194	1	17242	17242		24.021	0	1	711300	+		5255	12895	3525	3550	7283	7283					-0.023063018303901117
FTKGTGTEGQL	11	Unmodified	_FTKGTGTEGQL_					0	0	0			REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7890014648438	2	569.790578	1137.5666	-0.29572	-0.0001685	-3.2188	-0.001834	-3.5145	-0.0020025	569.7885504048456	22.866	0.2524	22.866	22.74	22.993	0					31	22	2	0	0	0	0.4147	1	2244	2244		0.96228	0.16864	1	15324	+		5256	13210	3526	3551	7284	7284					0.0033221640117062634
FTKLPVVTSF	10	Unmodified	_FTKLPVVTSF_					0	0	0			REV__ENSG00000091583|ENST00000205948|APOH	REV__ENSG00000091583|ENST00000205948|APOH	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2559204101562	2	569.828975	1137.6434	0.30998	0.00017663	-0.36786	-0.00020962	-0.057882	-3.2983E-05	569.8290579009386	96.082	0.1988	96.121	96.037	96.236	0.039772					17	9	2	0	0	0	0.30896	1	24213	24213		13.042	0	1	143070	+		5257	8322	3527	3552	7285	7285					0.08008059688268077
FTLASDFEI	9	Unmodified	_FTLASDFEI_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000492594.6_1_11:2966840-2977015:-|nuORF;ENST00000528363.5_1_11:2975753-2985939:-|nuORF	ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7582397460938	2	521.758215	1041.50188	0.16367	8.5395E-05	0.177	9.2351E-05	0.34067	0.00017775	521.7581649961559	79.402	0.54681	79.429	79.195	79.742	0.026436					69	19	5	0	0	0	0.14091	1	19190	19190		25.399	0.72543	1	1020100			5258	5520	3528	3553	7286	7286					-0.017213584048704433
FTLDNYGFIL	10	Unmodified	_FTLDNYGFIL_					0	0	0		tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8087158203125	2	601.808239	1201.60193	0.49047	0.00029517	0.36935	0.00022228	0.85982	0.00051745	601.807955648784	75.817	1.7447	75.861	75.085	76.83	0.044037					130	83	2	0	0	0	0.20801	2	18029	17974;18029		32.786	1.0834	1	2895000			5259	13546	3529	3554	7287;7288	7288					0.009188789289510169
FTLRWATW	8	Unmodified	_FTLRWATW_					0	0	0		ENST00000357429.10_1_7:1166987-1177867:-|nuORF	ENST00000357429.10_1_7:1166987-1177867:-|nuORF	ENST00000357429.10_1_7:1166987-1177867:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2891235351562	2	540.784902	1079.55525	0.48321	0.00026131	3.2849	0.0017764	3.7681	0.0020378	541.2891756508858	94.004	0.40235	94.004	93.941	94.343	0					59	22	4	0	0	0	0.49441	1	23718	23718		13.508	2.684	1	311300			5260	6132	3530	3555	7289	7289					0.01865483888309427
FTLSWLPLW	9	Unmodified	_FTLSWLPLW_					0	0	0		ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.301025390625	2	581.81841	1161.62227	0.65689	0.00038219	-3.2498	-0.0018908	-2.5929	-0.0015086	581.8166845504946	69.892	0.3829	69.892	69.732	70.114	0					28	13	3	0	0	0	0.2446	1	16438	16438		11.64	0	1	243500			5261	3375	3531	3556	7290	7290					0.04792094379422451
FTMYEYYL	8	Unmodified	_FTMYEYYL_					0	0	0		tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7593383789062	2	565.249169	1128.48378	-0.05306	-2.9992E-05	-1.0026	-0.00056671	-1.0556	-0.0005967	565.2486290666817	24.649	0.34168	24.745	24.609	24.951	0.096073					35	28	2	0	0	0	0.3576	1	2595	2595		0.69038	0	1	41302			5262	13724	3532	3557	7291	7291					-0.07531816651226109
FTNALIDEFQ	10	Unmodified	_FTNALIDEFQ_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8159790039062	2	599.292953	1196.57135	0.55398	0.000332	0.074037	4.437E-05	0.62802	0.00037637	599.2927270376682	54.909	0.38926	54.974	54.826	55.216	0.065128					25	15	2	0	0	0	0.39071	1	11701	11701		12.873	2.722	1	132130	+		5263	8649	3533	3558	7292	7292					-0.019068994560939245
FTNDVIVLT	9	Unmodified	_FTNDVIVLT_					0	0	0			REV__tr|U7T5Z8|U7T5Z8_FUSNUL-methioninegamma-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00144PE=3SV=1	REV__tr|U7T5Z8|U7T5Z8_FUSNUL-methioninegamma-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00144PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2821044921875	2	511.281857	1020.54916	0.28439	0.0001454	-0.47333	-0.00024201	-0.18894	-9.6602E-05	511.2814814433641	77.887	0.35416	77.887	77.743	78.097	0					22	11	3	0	0	0	0.22083	1	18835	18835		16.149	0	1	170740	+		5264	13309	3534	3559	7293	7293					0.039709208661292905
FTNTWWRMP	9	Unmodified	_FTNTWWRMP_					0	0	0			REV__ENST00000446105.6_1_12:6761840-6762457:-|nuORF	REV__ENST00000446105.6_1_12:6761840-6762457:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.7937622070312	2	619.792401	1237.57025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.668	1	99.668	99.168	100.17	0								0	0	0	0.26267	1	25443	25443		6.7232	0.99131	1		+		5265	11895	3535	3560	7294	7294					-0.03903392305983289
FTPDHVVYA	9	Unmodified	_FTPDHVVYA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7583618164062	2	524.758549	1047.50255	-0.16949	-8.8941E-05	0.1067	5.5993E-05	-0.062786	-3.2948E-05	524.7585063197912	45.657	0.87684	45.657	45.474	46.351	0					67	30	4	0	0	0	0.033885	2	8985	8985;9029		48.346	25.197	1	710180			5266	4703	3536	3561	7295;7296	7295					-0.019305189651277033
FTPDHVVYA	9	Unmodified	_FTPDHVVYA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7586059570312	2	524.758549	1047.50255	-0.053079	-2.7854E-05	0.22724	0.00011925	0.17416	9.1392E-05	524.7585766839026	45.558	0.9509	45.644	45.475	46.426	0.085617					63	35	4	0	0	0	0.030375	2	8872	8829;8872		50.855	27.707	1	564380			5267	4703	3536	3561	7297;7298	7298					-0.019305189651277033
FTPVITIVL	9	Unmodified	_FTPVITIVL_					0	0	0		ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.81549072265625	2	501.815336	1001.61612	0.22223	0.00011152	0.0051792	2.599E-06	0.22741	0.00011412	501.81523248797623	102.84	0.25223	102.84	102.77	103.03	0					41	15	3	0	0	0	0.18364	1	26410	26410		20.454	4.6064	1	337640			5268	6278	3537	3562	7299	7299					0.11537576147884465
FTPVITIVL	9	Unmodified	_FTPVITIVL_					0	0	0		ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8153076171875	2	501.815336	1001.61612	0.44363	0.00022262	-0.15616	-7.8365E-05	0.28747	0.00014426	501.8152966157943	101.24	0.95843	101.28	100.97	101.93	0.042656					165	67	4	0	0	0	0.12809	1	25707	25707		26.884	0	1	5181700			5269	6278	3537	3562	7300	7300					0.11537576147884465
FTPVITIVL	9	Unmodified	_FTPVITIVL_					0	0	0		ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8153076171875	2	501.815336	1001.61612	0.39936	0.00020041	-0.2606	-0.00013077	0.13877	6.9635E-05	501.8151642999078	102.66	0.52639	102.7	102.64	103.17	0.040916					75	44	3	0	0	0	0.23216	1	26224	26224		14.838	4.0143	1	313210			5270	6278	3537	3562	7301	7301					0.11537576147884465
FTPVITIVL	9	Unmodified	_FTPVITIVL_					0	0	0		ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8155212402344	2	501.815336	1001.61612	0.4248	0.00021317	-0.12831	-6.4388E-05	0.29649	0.00014878	501.8152367389096	101.98	0.25049	102.02	101.96	102.22	0.042656					28	20	2	0	0	0	0.1478	1	26015	26015		34.102	0	1	628260			5271	6278	3537	3562	7302	7302					0.11537576147884465
FTQEEYFS	8	Unmodified	_FTQEEYFS_					0	0	0		ENST00000447933.5_1_7:156265368-156398412:-|nuORF	ENST00000447933.5_1_7:156265368-156398412:-|nuORF	ENST00000447933.5_1_7:156265368-156398412:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.267578125	2	525.724372	1049.43419	-0.12308	-6.4707E-05	1.0861	0.00057099	0.96302	0.00050628	525.7248234744806	45.859	0.48099	45.859	45.617	46.098	0					27	16	2	0	0	0	0.3576	1	9090	9090		5.2307	0.47466	1	65754			5272	6553	3538	3563	7303	7303					-0.08854808335672715
FTQEEYFS	8	Unmodified	_FTQEEYFS_					0	0	0		ENST00000447933.5_1_7:156265368-156398412:-|nuORF	ENST00000447933.5_1_7:156265368-156398412:-|nuORF	ENST00000447933.5_1_7:156265368-156398412:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2666625976562	2	525.724372	1049.43419	-0.057034	-2.9984E-05	1.3948	0.00073326	1.3377	0.00070328	525.725020774229	45.746	0.44952	45.831	45.606	46.055	0.085617					26	17	2	0	0	0	0.3576	1	8966	8966		5.2307	0.47466	1	54630			5273	6553	3538	3563	7304	7304					-0.08854808335672715
FTQQGFSPSPI	11	Unmodified	_FTQQGFSPSPI_					0	0	0			REV__ENSG00000184384|ENST00000524717|MAML2	REV__ENSG00000184384|ENST00000524717|MAML2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8026123046875	2	604.800946	1207.58734	0.39476	0.00023875	2.4245	0.0014663	2.8192	0.0017051	604.8025928623886	35.987	0.67709	35.987	35.675	36.352	0					34	26	2	0	0	0	0.41422	1	6160	6160		1.0715	0.5467	1	30678	+		5274	10633	3539	3564	7305	7305					-0.008151932191822198
FTRLERKRRQR	11	Unmodified	_FTRLERKRRQR_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.9782104492188	3	515.97808	1544.91241	0.17588	9.0751E-05	0.31622	0.00016316	0.4921	0.00025391	515.9781320270214	104.61	0.63579	104.61	104.38	105.01	0					152	61	3	0	0	0	0.41856	2	26919	26919;26958		0.08335	0	1	253980	+		5275	9966	3540	3565	7306;7307	7306					0.1617501142814035
FTRLERKRRQR	11	Unmodified	_FTRLERKRRQR_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3126831054688	3	515.97808	1544.91241	0.38595	0.00019914	0.045262	2.3354E-05	0.43121	0.0002225	515.9779870271501	104.61	0.56979	104.64	104.36	104.93	0.034004					119	57	3	0	0	0	0.41693	3	26708	26708;26743;26779		0.45452	0.37117	1	185570	+		5276	9966	3540	3565	7308;7309;7310	7308					0.1617501142814035
FTRLERKRRQR	11	Unmodified	_FTRLERKRRQR_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3126831054688	3	515.97808	1544.91241	0.38595	0.00019914	0.045262	2.3354E-05	0.43121	0.0002225	515.9779870271501	104.61	0.56979	104.64	104.36	104.93	0.034004					119	57	3	0	0	0	0.31101	1	26708	26708		0.45452	0.45452	1	185570	+		5277	9966	3540	3565	7311	7311					0.1617501142814035
FTSESWLL	8	Unmodified	_FTSESWLL_					0	0	0			REV__ENST00000398637.9_1_12:46581846-46582023:-|nuORF	REV__ENST00000398637.9_1_12:46581846-46582023:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7480773925781	2	491.74765	981.480748	0.29262	0.0001439	-0.016844	-8.283E-06	0.27578	0.00013561	491.7475502754991	78.2	0.49834	78.2	78.013	78.512	0					36	16	3	0	0	0	0.52502	1	18909	18909		9.3474	2.9933	1	242630	+		5278	11739	3541	3566	7312	7312					-0.010733237137174001
FTSLGLLEFS	10	Unmodified	_FTSLGLLEFS_					0	0	0			REV__ENST00000497188.1_1_1:155234069-155238352:-|nuORF	REV__ENST00000497188.1_1_1:155234069-155238352:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.8142700195312	2	557.294965	1112.57538	0.61853	0.00034471	0.2193	0.00012222	0.83784	0.00046692	557.2949751913211	91.975	0.39873	92.012	91.887	92.286	0.03653					18	13	2	0	0	0	0.31565	1	23003	23003		12.241	1.4411	1	54339	+		5279	10405	3542	3567	7313	7313					0.023591900376231933
FTSQLIVER	9	Unmodified	_FTSQLIVER_					0	0	0		nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	nc|ENSG00000106636|O15498-2|YKT6	nc|ENSG00000106636|O15498-2|YKT6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.757080078125	2	546.806031	1091.59751	0.46422	0.00025384	-0.63078	-0.00034491	-0.16656	-9.1074E-05	547.3072038907859	47.348	0.32619	47.348	47.231	47.557	0					17	10	2	0	0	0	0.20337	1	9510	9510		26.021	5.6062	1	73475			5280	1531	3543	3568	7314	7314					0.05537414506034111
FTSQLIVER	9	Unmodified	_FTSQLIVER_					0	0	0		nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	nc|ENSG00000106636|O15498-2|YKT6	nc|ENSG00000106636|O15498-2|YKT6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7567138671875	2	546.806031	1091.59751	0.44805	0.000245	-0.025619	-1.4009E-05	0.42244	0.00023099	546.8056906847243	47.266	0.38278	47.349	47.151	47.534	0.083096					23	14	3	0	0	0	0.24683	1	9337	9337		11.495	2.7493	1	55159			5281	1531	3543	3568	7315	7315					0.05537414506034111
FTTEQLHELE	10	Unmodified	_FTTEQLHELE_					0	0	0		ISX|p.E98_K99insLHS|1|0.06|ENSG00000175329|chr22:35082582-35082583|-/CTTCACAGT|inframe_insertion;ENSG00000175329|ENST00000404699|ISX	ISX|p.E98_K99insLHS|1|0.06|ENSG00000175329|chr22:35082582-35082583|-/CTTCACAGT|inframe_insertion	ISX|p.E98_K99insLHS|1|0.06|ENSG00000175329|chr22:35082582-35082583|-/CTTCACAGT|inframe_insertion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.8014526367188	2	623.801143	1245.58773	0.1038	6.4751E-05	-0.20574	-0.00012834	-0.10194	-6.3589E-05	623.8009267161789	86.649	0.45603	86.676	86.45	86.906	0.027573					67	20	4	0	0	0	0.42901	1	21386	21386		8.7454	3.8484	1	2114700			5282	4624	3544	3569	7316	7316					-0.025238182900011452
FTTFVFFMFFI	11	Unmodified	_FTTFVFFMFFI_					0	0	0		PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant;nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2	PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.5768127441406	3	482.910399	1445.70937	-0.072763	-3.5138E-05	1.4853	0.00071728	1.4126	0.00068215	482.91129052089724	49.535	0.31229	49.535	49.34	49.653	0					17	10	2	0	0	0	0.311	1	10171	10171		0.50596	0.09769	1	91900			5283	2046	3545	3570	7317	7317					0.004341325388168116
FTTPAVEVL	9	Unmodified	_FTTPAVEVL_					0	0	0			REV__nc|ENSG00000157766|P16112-3|ACAN	REV__nc|ENSG00000157766|P16112-3|ACAN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7713317871094	2	488.771126	975.527698	0.48251	0.00023584	-0.43935	-0.00021474	0.043158	2.1094E-05	488.7709394284693	83.757	0.27251	83.757	83.658	83.931	0					11	8	2	0	0	0	0.27332	1	20626	20626		10.074	0	1	63786	+		5284	9787	3546	3571	7318	7318					0.038955358374209936
FTTPAVEVL	9	Unmodified	_FTTPAVEVL_					0	0	0			REV__nc|ENSG00000157766|P16112-3|ACAN	REV__nc|ENSG00000157766|P16112-3|ACAN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	488.771126	975.527698	0.48251	0.00023584	-0.43935	-0.00021474	0.043158	2.1094E-05	488.7709394284693	83.757	0.27251	83.757	83.658	83.931	0	-0.01785	3.1379E-05	NaN	10.074	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63786	+		5285	9787	3546	3571							0.038955358374209936
FTTPAVEVL	9	Unmodified	_FTTPAVEVL_					0	0	0			REV__nc|ENSG00000157766|P16112-3|ACAN	REV__nc|ENSG00000157766|P16112-3|ACAN	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	488.771126	975.527698	0.15748	7.6973E-05	-0.63128	-0.00030855	-0.4738	-0.00023158	488.7709197220228	83.771	0.14105	83.792	83.668	83.809	0.021744	0.01785	-0.00015623	NaN	10.074	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85931	+		5286	9787	3546	3571							0.038955358374209936
FTTRLSLMF	9	Unmodified	_FTTRLSLMF_					0	0	0		ENST00000483804.5_1_1:161180439-161182178:+|nuORF	ENST00000483804.5_1_1:161180439-161182178:+|nuORF	ENST00000483804.5_1_1:161180439-161182178:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2979736328125	2	558.299527	1114.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.165	1	72.221	71.721	72.721	0.055939								0	0	0	0.2428	1	16912	16912		10.824	2.0785	1				5287	6770	3547	3572	7319	7319					0.03179260122328742
FTVGHVLLSF	10	Unmodified	_FTVGHVLLSF_					0	0	0			REV__ENSG00000187474|ENST00000339223|FPR3	REV__ENSG00000187474|ENST00000339223|FPR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7222900390625	2	560.313492	1118.61243	0.13823	7.7451E-05	-4.2619	-0.002388	-4.1236	-0.0023105	560.3115108337274	46.298	0.21274	46.298	46.207	46.42	0					9	6	2	0	0	0	0.31838	1	9177	9177		1.4819	0.68827	1	23998	+		5288	10732	3548	3573	7320	7320					0.057869063740326965
FTVVSTLLP	9	Unmodified	_FTVVSTLLP_					0	0	0			REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF	REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.31451416015625	2	488.789318	975.564084	0.061794	3.0204E-05	0.20085	9.8174E-05	0.26264	0.00012838	488.78932768843146	89.859	0.30981	89.859	89.674	89.984	0					19	12	2	0	0	0	0.25644	1	22459	22459		3.9444	0	1	94252	+		5289	11972	3549	3574	7321	7321					0.075324127341446
FTYPFPETRFL	11	Unmodified	_FTYPFPETRFL_					0	0	0		ENSG00000168070|ENST00000301896|MAJIN;nc|ENSG00000168070|Q3KP22|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2429504394531	3	473.243206	1416.70779	-0.34235	-0.00016201	0.41503	0.00019641	0.072687	3.4398E-05	473.2433093904751	32.55	0.50236	32.624	32.335	32.837	0.073784					67	28	3	0	0	0	0.40904	1	4947	4947		2.2527	0.92309	1	51413			5290	4262	3550	3575	7322	7322					0.016102147744049944
FTYPPLFYR	9	Unmodified	_FTYPPLFYR_					0	0	0			REV__ENSG00000023608|ENST00000216294|SNAPC1	REV__ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8783874511719	3	401.878087	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.743	1	31.817	31.317	32.317	0.073782								0	0	0	0.2927	1	4692	4692		0.23584	0	1		+		5291	8003	3551	3576	7323	7323					0.01922906374034028
FVAEFSVPLL	10	Unmodified	_FVAEFSVPLL_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3157958984375	2	561.3157	1120.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.236	1	99.236	98.736	99.736	0								0	0	0	0.33156	1	25313	25313		10.074	0	1				5292	4356	3552	3577	7324	7324					0.06136370796957635
FVAEFSVPLL	10	Unmodified	_FVAEFSVPLL_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3175048828125	2	561.3157	1120.61685	0.62733	0.00035213	0.45481	0.00025529	1.0821	0.00060742	561.3157505332055	98.714	0.59562	98.756	98.671	99.267	0.041939					57	39	2	0	0	0	0.38104	4	24992	24992;25056;25062;25107		13.906	0.6908	1	99727			5293	4356	3552	3577	7325;7326;7327;7328	7325					0.06136370796957635
FVAEFSVPLL	10	Unmodified	_FVAEFSVPLL_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3155517578125	2	561.3157	1120.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.964	1	98.005	97.505	98.505	0.040855								0	0	0	0.18096	1	24773	24773		32.305	3.2239	1				5294	4356	3552	3577	7329	7329					0.06136370796957635
FVAFISRSF	9	Unmodified	_FVAFISRSF_					0	0	0			REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|68	REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|68	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2689208984375	2	537.292559	1072.57057	0.4763	0.00025591	1.0418	0.00055975	1.5181	0.00081566	537.2929313102678	52.093	0.14786	52.16	52.027	52.175	0.067173					6	4	2	0	0	0	0.2491	1	10815	10815		8.5933	3.3626	1	41536	+		5295	7788	3553	3578	7330	7330					0.0371835068551718
FVAMREEF	8	Unmodified	_FVAMREEF_					0	0	0			REV__LMBRD1-COL19A1|1|fusion	REV__LMBRD1-COL19A1|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7750854492188	2	514.747127	1027.4797	0.59872	0.00030819	1.2655	0.00065139	1.8642	0.00095958	514.7485718935001	97.782	0.3909	97.823	97.697	98.088	0.040855					34	20	2	0	0	0	0.35759	1	24732	24732		9.3474	1.4373	1	59914	+		5296	8248	3554	3579	7331	7331					-0.032938613542683015
FVAPKVNPKN	10	Unmodified	_FVAPKVNPKN_					0	0	0		ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000505555.5_1_5:218470-251793:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3240356445312	2	557.324391	1112.63423	0.68367	0.00038103	2.2246	0.0012398	2.9083	0.0016209	557.3254355477047	101.11	0.42472	101.15	100.94	101.36	0.042831					36	24	2	0	0	0	0.46554	1	25716	25716		1.8442	0.19162	1	44882			5297	6888	3555	3580	7332	7332					0.08241711122627748
FVAPSDIQL	9	Unmodified	_FVAPSDIQL_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.26898193359375	2	495.26875	988.522947	0.17655	8.7442E-05	0.61593	0.00030505	0.79248	0.00039249	495.26888555490035	72.099	0.46089	72.099	71.948	72.409	0					32	15	3	0	0	0	0.02293	1	17047	17047		56.177	30.778	1	166540			5298	2160	3556	3581	7333	7333					0.028226516946688207
FVAPSDIQL	9	Unmodified	_FVAPSDIQL_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2690124511719	2	495.26875	988.522947	0.26733	0.0001324	0.29636	0.00014678	0.56369	0.00027918	495.2686403115078	71.979	0.34392	72.035	71.921	72.265	0.055939					25	11	3	0	0	0	0.065576	1	16877	16877		39.95	19.496	1	160290			5299	2160	3556	3581	7334	7334					0.028226516946688207
FVARRFNL	8	Unmodified	_FVARRFNL_					0	0	0			REV__ENST00000475596.1_1_2:190306218-190316629:+|nuORF	REV__ENST00000475596.1_1_2:190306218-190316629:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.79913330078125	2	511.798343	1021.58213	-0.033297	-1.7041E-05	0.50975	0.00026089	0.47646	0.00024385	511.7985565130351	106.82	0.39793	106.82	106.66	107.06	0					91	40	3	0	0	0	0.53858	1	27521	27521		2.3027	0	1	387670	+		5300	8782	3557	3582	7335	7335					0.07220592499515988
FVCCAVCNKI	10	Unmodified	_FVCCAVCNKI_					0	0	0		ENSG00000203872|ENST00000388923|C6orf163	ENSG00000203872|ENST00000388923|C6orf163	ENSG00000203872|ENST00000388923|C6orf163	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.259033203125	2	550.258491	1098.50243	0.54039	0.00029735	0.90486	0.00049791	1.4452	0.00079526	550.2589859737415	74.387	1.1882	74.436	73.902	75.09	0.048546					89	42	3	0	0	0	0.40987	1	17497	17497		10.824	10.824	1	1435200			5301	5446	3558	3583	7336	7336					-0.04288301552651319
FVCCAVCNKI	10	Unmodified	_FVCCAVCNKI_					0	0	0		ENSG00000203872|ENST00000388923|C6orf163	ENSG00000203872|ENST00000388923|C6orf163	ENSG00000203872|ENST00000388923|C6orf163	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	550.258491	1098.50243	0.39197	0.00021568	1.1508	0.00063321	1.5427	0.00084889	550.2591595585195	74.111	1.3188	74.111	73.829	75.148	0	-0.16221	0.00010289	NaN	10.824	119	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1531000			5302	5446	3558	3583							-0.04288301552651319
FVCCAVCNKI	10	Unmodified	_FVCCAVCNKI_					0	0	0		ENSG00000203872|ENST00000388923|C6orf163	ENSG00000203872|ENST00000388923|C6orf163	ENSG00000203872|ENST00000388923|C6orf163	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	550.258491	1098.50243	0.54039	0.00029735	0.90486	0.00049791	1.4452	0.00079526	550.2589859737415	74.387	1.1882	74.436	73.902	75.09	0.048546	0.16221	-0.00016773	NaN	10.824	89	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1435200			5303	5446	3558	3583							-0.04288301552651319
FVCPICFDMI	10	Unmodified	_FVCPICFDMI_					0	0	0		nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;ENSG00000143207|ENST00000367669|COP1;nc|ENSG00000143207|Q8NHY2-5|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.268310546875	2	594.268524	1186.52249	0.47638	0.0002831	-0.048046	-2.8552E-05	0.42833	0.00025454	594.2683288664116	70.241	1.7066	70.241	69.933	71.64	0					146	61	4	0	0	0	0.27354	1	16575	16575		25.399	2.663	1	594430			5304	3140	3559	3584	7337	7337					-0.06330550612710795
FVCRVTLEDQ	10	Unmodified	_FVCRVTLEDQ_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2157897949219	3	403.869262	1208.58596	0.094186	3.8039E-05	-0.22636	-9.142E-05	-0.13217	-5.3381E-05	403.86910502503054	31.878	0.47853	31.878	31.705	32.183	0					42	19	3	0	0	0	0.46426	1	4909	4909		2.086	0.63089	1	35032	+		5305	10331	3560	3585	7338	7338					-0.009991505795824196
FVCWYRPMY	9	Unmodified	_FVCWYRPMY_					0	0	0		ENST00000472397.5_1_1:155226487-155230214:-|nuORF;ENST00000490999.5_1_1:155226066-155230310:-|nuORF;nc|ENSG00000116521|O14828-2|SCAMP3;ENSG00000116521|ENST00000302631|SCAMP3	ENST00000472397.5_1_1:155226487-155230214:-|nuORF	ENST00000472397.5_1_1:155226487-155230214:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.56207275390625	3	422.192912	1263.55691	0.60546	0.00025562	2.4866	0.0010498	3.092	0.0013054	422.5283272197493	71.176	0.13371	71.176	71.135	71.269	0					5	4	2	0	0	0	0.25809	1	16760	16760		1.1933	0.41681	1	34721			5306	1959	3561	3586	7339	7339					-0.06432966409579421
FVDDTNVYR	9	Unmodified	_FVDDTNVYR_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.76953125	2	564.769645	1127.52474	-0.24644	-0.00013918	-1.1181	-0.00063148	-1.3646	-0.00077066	564.7696609436512	45.122	0.86675	45.122	44.808	45.675	0					70	30	4	0	0	0	0.27332	2	8863	8863;8914		10.074	0	1	265340			5307	4573	3562	3587	7340;7341	7340					-0.03392339287370305
FVDDTNVYR	9	Unmodified	_FVDDTNVYR_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7697143554688	2	564.769645	1127.52474	0.022829	1.2893E-05	-1.0875	-0.0006142	-1.0647	-0.00060131	564.7696276340351	45.008	0.82094	45.096	44.656	45.477	0.087543					66	31	4	0	0	0	0.27332	2	8674	8674;8720		10.074	0	1	230380			5308	4573	3562	3587	7342;7343	7342					-0.03392339287370305
FVDEHEPSM	9	Oxidation (M)	_FVDEHEPSM(Oxidation (M))_		FVDEHEPSM(1)		FVDEHEPSM(89)	0	0	1		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7266235351562	2	553.726589	1105.43863	0.00085066	4.7104E-07	0.2235	0.00012376	0.22436	0.00012423	553.7266403352776	29.592	1.0768	29.592	29.376	30.452	0					110	53	3	0	0	0	0.0045534	2	4189	4144;4189		88.954	72.012	1	176430			5309	4051	3563	3588	7344;7345	7345		246			-0.10987667184394923
FVDEHEPSM	9	Oxidation (M)	_FVDEHEPSM(Oxidation (M))_		FVDEHEPSM(1)		FVDEHEPSM(61)	0	0	1		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7266845703125	2	553.726589	1105.43863	0.10703	5.9265E-05	0.15082	8.3512E-05	0.25785	0.00014278	553.7265967787783	29.553	0.76641	29.631	29.363	30.129	0.078289					99	45	4	0	0	0	0.015682	1	4042	4042		61.357	50.534	1	148070			5310	4051	3563	3588	7346	7346		246			-0.10987667184394923
FVDEHEPSM	9	Unmodified	_FVDEHEPSM_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.727783203125	2	545.729132	1089.44371	0.033079	1.8052E-05	-1.181	-0.00064453	-1.148	-0.00062648	545.7283416950644	39.512	0.51849	39.512	39.318	39.836	0					34	18	2	0	0	0	0.17247	1	7125	7125		21.747	7.165	1	106500			5311	4051	3563	3589	7347	7347					-0.09743363321786092
FVDEHEPSM	9	Unmodified	_FVDEHEPSM_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7285766601562	2	545.729132	1089.44371	0.13815	7.5392E-05	-1.1752	-0.00064133	-1.037	-0.00056594	545.7281854443137	39.384	0.54087	39.473	39.297	39.837	0.088562					38	21	2	0	0	0	0.1182	1	6992	6992		28.487	7.6156	1	77727			5312	4051	3563	3589	7348	7348					-0.09743363321786092
FVDELTQTF	9	Unmodified	_FVDELTQTF_					0	0	0			REV__ENSG00000159197|ENST00000290310|KCNE2	REV__ENSG00000159197|ENST00000290310|KCNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2685546875	2	550.268947	1098.52334	0.10844	5.9674E-05	0.46027	0.00025327	0.56872	0.00031295	550.26917515041	73.04	0.48935	73.04	72.824	73.313	0					40	16	3	0	0	0	0.1182	1	17390	17390		28.487	5.3384	1	1361500	+		5313	9821	3564	3590	7349	7349					-0.0219797337615546
FVDETWQQL	9	Unmodified	_FVDETWQQL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2799682617188	2	583.279846	1164.54514	0.6921	0.00040369	-0.31899	-0.00018606	0.3731	0.00021762	583.2796336249633	70.473	0.86662	70.473	70.17	71.037	0					66	31	3	0	0	0	0.00061878	2	16548	16548;16629		129.77	96.327	1	1470000			5314	2587	3565	3591	7350;7351	7350					-0.03055168627565763
FVDETWQQL	9	Unmodified	_FVDETWQQL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.7615356445312	2	583.279846	1164.54514	0.81661	0.00047631	-0.26652	-0.00015545	0.55009	0.00032086	583.2796650357709	70.371	0.87061	70.432	70.215	71.086	0.060562					62	33	2	0	0	0	0.029291	2	16442	16442;16494		51.63	25.362	1	1261800			5315	2587	3565	3591	7352;7353	7352					-0.03055168627565763
FVDFEGISL	9	Unmodified	_FVDFEGISL_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7606201171875	2	513.760758	1025.50696	0.32532	0.00016713	-0.12076	-6.204E-05	0.20456	0.00010509	513.7606360606406	87.98	0.4296	88.01	87.767	88.196	0.030037					26	14	2	0	0	0	0.10067	1	21744	21744		32.305	10.559	1	179030			5316	2025	3566	3592	7354	7354					-0.004770545422161376
FVDFEGISL	9	Unmodified	_FVDFEGISL_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	513.760758	1025.50696	0.55487	0.00028507	-0.024953	-1.282E-05	0.52991	0.00027225	513.7607603865578	87.93	0.40326	87.93	87.736	88.139	0	-0.039936	6.8421E-05	NaN	32.305	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182600			5317	2025	3566	3592							-0.004770545422161376
FVDIDYLY	8	Unmodified	_FVDIDYLY_					0	0	0			REV__ENST00000558522.5_1_15:79165359-79183469:+|nuORF	REV__ENST00000558522.5_1_15:79165359-79183469:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2700805664062	2	524.255308	1046.49606	0.4397	0.00023052	0.82135	0.0004306	1.2611	0.00066112	524.255455551376	70.404	0.31689	70.464	70.332	70.649	0.060562					16	11	2	0	0	0	0.35499	1	16356	16356		15.768	1.1865	1	81525	+		5318	12470	3567	3593	7355	7355					-0.025324569165150024
FVDLHEFTD	9	Unmodified	_FVDLHEFTD_					0	0	0		ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000105443|Q99418|CYTH2;ENST00000467412.1_1_19:48976489-48976636:+|nuORF	ENSG00000105443|ENST00000452733|CYTH2	ENSG00000105443|ENST00000452733|CYTH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2891845703125	2	561.758746	1121.50294	0.4002	0.00022482	-0.087361	-4.9076E-05	0.31284	0.00017574	561.7588431421901	67.947	0.51116	67.947	67.812	68.324	0					20	18	2	0	0	0	0.24263	1	15762	15762		7.9102	0	1	79060			5319	1470	3568	3594	7356	7356					-0.052951440359720436
FVDPAQITM	9	Unmodified	_FVDPAQITM_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2550964355469	2	511.254785	1020.49502	0.52737	0.00026962	-1.3482	-0.00068927	-0.82083	-0.00041965	511.2547520855334	70.237	1.6394	70.237	69.47	71.109	0					186	58	5	0	0	0	0.1646	1	16510	16510		22.658	4.5231	1	1002800			5320	4206	3569	3595	7357	7357					-0.014409945570719174
FVDPNGKISL	10	Unmodified	_FVDPNGKISL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.30078125	2	545.300581	1088.58661	0.5904	0.00032195	-0.15513	-8.4593E-05	0.43527	0.00023735	545.3003874957235	54.795	0.94408	54.795	54.467	55.411	0					88	39	4	0	0	0	6.0366E-05	1	11772	11772		102.55	46.372	1	1569600			5321	1569	3570	3596	7358	7358					0.045860121317673475
FVDPNGKISL	10	Unmodified	_FVDPNGKISL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3008422851562	2	545.300581	1088.58661	0.62279	0.00033961	-0.19997	-0.00010904	0.42282	0.00023057	545.3003926438138	54.779	0.90912	54.844	54.582	55.491	0.065128					97	38	4	0	0	0	0.0010325	1	11626	11626		89.609	33.432	1	1317200			5322	1569	3570	3596	7359	7359					0.045860121317673475
FVDPSQDHAL	10	Unmodified	_FVDPSQDHAL_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7694091796875	2	564.769645	1127.52474	-0.24644	-0.00013918	-1.1181	-0.00063148	-1.3646	-0.00077066	564.7696609436512	45.122	0.86675	45.122	44.808	45.675	0					70	30	4	0	0	0	0.40359	1	8818	8818		11.495	1.4208	1	265340			5323	2467	3571	3597	7360	7360					-0.03392339287370305
FVDTQDRSL	9	Unmodified	_FVDTQDRSL_					0	0	0		nc|ENSG00000198585|Q96DE0-3|NUDT16;nc|ENSG00000198585|Q96DE0-2|NUDT16;ENSG00000198585|ENST00000521288|NUDT16;nc|ENSG00000198585|Q96DE0-4|NUDT16	nc|ENSG00000198585|Q96DE0-3|NUDT16	nc|ENSG00000198585|Q96DE0-3|NUDT16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.77001953125	2	540.769645	1079.52474	0.37362	0.00020204	-0.42853	-0.00023174	-0.054909	-2.9693E-05	540.7692892520272	38.369	0.38976	38.369	38.207	38.597	0					29	12	3	0	0	0	0.11198	1	6796	6796		29.841	11.706	1	65190			5324	5381	3572	3598	7361	7361					-0.011843392873743142
FVDTQDRSL	9	Unmodified	_FVDTQDRSL_					0	0	0		nc|ENSG00000198585|Q96DE0-3|NUDT16;nc|ENSG00000198585|Q96DE0-2|NUDT16;ENSG00000198585|ENST00000521288|NUDT16;nc|ENSG00000198585|Q96DE0-4|NUDT16	nc|ENSG00000198585|Q96DE0-3|NUDT16	nc|ENSG00000198585|Q96DE0-3|NUDT16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7695922851562	2	540.769645	1079.52474	0.47758	0.00025826	-0.60737	-0.00032845	-0.12979	-7.0185E-05	540.769195162067	38.288	0.49947	38.375	38.183	38.682	0.08688					29	17	3	0	0	0	0.13341	1	6648	6648		26.268	8.1332	1	37818			5325	5381	3572	3598	7362	7362					-0.011843392873743142
FVEAEYLR	8	Unmodified	_FVEAEYLR_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7670288085938	2	513.766374	1025.5182	0.35457	0.00018217	1.2858	0.00066058	1.6403	0.00084275	513.7671425649796	47.951	0.63607	47.951	47.763	48.399	0					34	21	2	0	0	0	0.53557	1	9758	9758		4.3292	0	1	130760	+		5326	10198	3573	3599	7363	7363					0.006457675518731776
FVEDLGFW	8	Unmodified	_FVEDLGFW_					0	0	0		ENSG00000186106|ENST00000335659|ANKRD46;nc|ENSG00000186106|Q86W74-1|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.74151611328125	2	506.742368	1011.47018	-0.016096	-8.1566E-06	-0.81928	-0.00041517	-0.83538	-0.00042332	506.7418327459461	33.776	0.97229	33.85	33.593	34.565	0.074326					104	40	3	0	0	0	0.52502	1	5251	5251		9.3474	0.75416	1	119220			5327	5068	3574	3600	7364	7364					-0.03509306368130183
FVELGQVAL	9	Unmodified	_FVELGQVAL_					0	0	0		ENST00000459963.5_1_1:160321502-160323118:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.27911376953125	2	488.279118	974.543683	0.17308	8.4514E-05	0.24785	0.00012102	0.42093	0.00020553	488.2791051787961	77.454	0.37774	77.454	77.338	77.716	0					21	15	2	0	0	0	0.02293	1	18680	18680		56.177	27.095	1	391480			5328	3855	3575	3601	7365	7365					0.055392420743373805
FVELGQVAL	9	Unmodified	_FVELGQVAL_					0	0	0		ENST00000459963.5_1_1:160321502-160323118:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2796325683594	2	488.279118	974.543683	0.28473	0.00013903	0.21736	0.00010613	0.50208	0.00024516	488.27905643263495	77.311	0.52265	77.346	77.3	77.822	0.034477					28	20	2	0	0	0	0.065576	1	18504	18504		39.95	20.693	1	385030			5329	3855	3575	3601	7366	7366					0.055392420743373805
FVELYLLSF	9	Unmodified	_FVELYLLSF_					0	0	0		ENST00000399766.7_1_1:25825018-25825117:+|nuORF	ENST00000399766.7_1_1:25825018-25825117:+|nuORF	ENST00000399766.7_1_1:25825018-25825117:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8104248046875	2	565.810251	1129.60595	0.4627	0.0002618	-0.09274	-5.2473E-05	0.36996	0.00020933	565.8102368640687	93.548	0.53915	93.548	93.358	93.898	0					56	20	4	0	0	0	0.31496	1	23645	23645		4.756	0.81161	1	296150			5330	6361	3576	3602	7367	7367					0.04632968422652084
FVFANSAPL	9	Unmodified	_FVFANSAPL_					0	0	0			REV__ENST00000550608.1_1_12:56114968-56115732:+|nuORF	REV__ENST00000550608.1_1_12:56114968-56115732:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.25677490234375	2	483.258185	964.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.25	1	100.29	99.79	100.79	0.042839								0	0	0	0.28409	1	25466	25466		2.3027	0.24298	1		+		5331	9205	3577	3603	7368	7368					0.01814686385796449
FVFFFLLISY	10	Unmodified	_FVFFFLLISY_					0	0	0		ENSG00000172742|ENST00000641962|OR4D9	ENSG00000172742|ENST00000641962|OR4D9	ENSG00000172742|ENST00000641962|OR4D9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.2547912597656	3	432.574004	1294.70018	0.5648	0.00024432	0.027135	1.1738E-05	0.59194	0.00025606	432.90815454006474	100.47	0.27867	100.47	100.38	100.66	0					17	13	2	0	0	0	0.31837	1	25712	25712		1.9064	0.57673	1	30294			5332	4510	3578	3604	7369	7369					0.06462107244828985
FVFFFLLISY	10	Unmodified	_FVFFFLLISY_					0	0	0		ENSG00000172742|ENST00000641962|OR4D9	ENSG00000172742|ENST00000641962|OR4D9	ENSG00000172742|ENST00000641962|OR4D9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	432.574004	1294.70018	0.33869	0.00014651	0.54148	0.00023423	0.88017	0.00038074	432.574250171026	100.46	0.15652	100.5	100.36	100.51	0.042839	0.014782	0.00030296	NaN	1.9064	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54582			5333	4510	3578	3604							0.06462107244828985
FVFNGFLDF	9	Unmodified	_FVFNGFLDF_					0	0	0		ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF;nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5	ENST00000477136.5_1_2:27275826-27278122:+|nuORF	ENST00000477136.5_1_2:27275826-27278122:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7900390625	2	553.271293	1104.52803	0.47736	0.00026411	-0.68615	-0.00037963	-0.20879	-0.00011552	553.2711954243499	79.548	0.36144	79.575	79.437	79.799	0.026428					29	12	3	0	0	0	0.22289	1	19204	19204		18.135	2.2878	1	263500			5334	952	3579	3605	7370	7370					-0.020050444427170078
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.8179931640625	2	517.799686	1033.58482	0.36613	0.00018958	0.71574	0.00037061	1.0819	0.00056019	517.8001384450197	101.67	0.44457	101.67	101.49	101.94	0					52	32	2	0	0	0	0.2446	1	26005	26005		11.64	6.4096	1	66136			5335	1459	3580	3606	7371	7371					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	517.799686	1033.58482	0.44853	0.00023225	0.51812	0.00026828	0.96665	0.00050053	517.8000514460043	101.6	0.38033	101.65	101.51	101.89	0.042656	-0.010538	-0.00010042	NaN	11.64	54	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95933			5336	1459	3580	3606							0.06937003113830542
FVFYSVHSF	9	Unmodified	_FVFYSVHSF_					0	0	0		ENSG00000178201|ENST00000321039|VN1R1	ENSG00000178201|ENST00000321039|VN1R1	ENSG00000178201|ENST00000321039|VN1R1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2976684570312	2	566.776742	1131.53893	0.25345	0.00014365	-0.32012	-0.00018144	-0.066676	-3.779E-05	567.2788014940843	78.481	2.2336	78.481	77.532	79.765	0					167	77	3	0	0	0	0.22289	1	19133	19133		18.135	7.9516	1	167450			5337	4736	3581	3607	7372	7372					-0.021576420684368713
FVGGAVAVRD	10	Unmodified	_FVGGAVAVRD_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.20703125	2	495.771991	989.529429	0.43873	0.00021751	-0.25892	-0.00012837	0.1798	8.9141E-05	495.7716317986942	37.715	0.55431	37.715	37.547	38.101	0					24	18	2	0	0	0	0.31771	1	6651	6651		4.3292	4.3292	1	30400	+		5338	10036	3582	3608	7373	7373					0.034245896460333825
FVGKDSYVEL	10	Unmodified	_FVGKDSYVEL_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7767333984375	2	578.797872	1155.58119	0.62243	0.00036026	-0.45794	-0.00026505	0.16449	9.5204E-05	578.7978890994415	54.979	0.26162	54.979	54.85	55.112	0					18	9	3	0	0	0	0.3142	1	11818	11818		17.443	1.2935	1	121850			5339	4970	3583	3609	7374	7374					0.009622885492944988
FVGLHCGRV	9	Unmodified	_FVGLHCGRV_					0	0	0			REV__nc|ENSG00000104812|P13807-2|GYS1	REV__nc|ENSG00000104812|P13807-2|GYS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2715148925781	2	494.263279	986.512005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.364	1	61.364	60.864	61.864	0								0	0	0	0.25361	1	13772	13772		8.5933	2.2392	1		+		5340	8513	3584	3610	7375	7375					0.018209708394010704
FVGSPAYLI	9	Unmodified	_FVGSPAYLI_					0	0	0		ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.76629638671875	2	483.768386	965.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.423	1	61.423	60.923	61.923	0								0	0	0	0.23452	1	13790	13790		12.532	0	1				5341	3828	3585	3611	7376	7376					0.03807857045603669
FVGVLVTPLA	10	Unmodified	_FVGVLVTPLA_					0	0	0			REV__nc|ENSG00000083444|Q02809-2|PLOD1	REV__nc|ENSG00000083444|Q02809-2|PLOD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.3118591308594	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.576	1	54.641	54.141	55.141	0.065128								0	0	0	0.33022	1	11571	11571		11.64	1.4897	1		+		5342	8256	3586	3612	7377	7377					0.10464692005143661
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|5|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8160400390625	2	559.815867	1117.61718	0.41499	0.00023232	-0.033009	-1.8479E-05	0.38198	0.00021384	559.81579094119	76.598	1.6866	76.598	76.357	78.043	0					88	65	2	0	0	0	0.0076571	3	18435	18390;18435;18478		74.423	32.328	1	3705500			5343	200;3052;201	3587	3613	7378;7379;7380	7379					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|5|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8160400390625	2	559.815867	1117.61718	0.52097	0.00029165	-0.22067	-0.00012354	0.3003	0.00016811	559.8157255136052	76.565	0.90154	76.604	76.332	77.233	0.03923					60	32	2	0	0	0	0.011655	3	18275	18223;18275;18323		64.236	30.134	1	1860800			5344	200;3052;201	3587	3613	7381;7382;7383	7382					0.06307790516780187
FVHFAMLTL	9	Unmodified	_FVHFAMLTL_					0	0	0			REV__ENST00000488307.5_1_9:130565203-130570042:+|nuORF	REV__ENST00000488307.5_1_9:130565203-130570042:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7815551757812	2	539.791338	1077.56812	0.42992	0.00023207	2.2983	0.0012406	2.7283	0.0014727	539.7925703553943	56.625	0.42165	56.691	56.522	56.944	0.066452					23	14	2	0	0	0	0.20004	1	12204	12204		23.148	0.41214	1	181440	+		5345	9256	3588	3614	7384	7384					0.03244178956219912
FVHMTSLSL	9	Unmodified	_FVHMTSLSL_					0	0	0			REV__NPS|p.W22Lfs*9|1|0.15|ENSG00000214285|chr10:127549540-127549541|-/T|frameshift_variant	REV__NPS|p.W22Lfs*9|1|0.15|ENSG00000214285|chr10:127549540-127549541|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.7700805664062	2	517.770603	1033.52665	0.44969	0.00023284	-1.0188	-0.00052752	-0.56913	-0.00029468	517.7699968074776	94.328	0.66304	94.328	94.084	94.747	0					74	29	4	0	0	0	0.22344	1	23830	23830		15.847	1.9411	1	825490	+		5346	11000	3589	3615	7385	7385					0.011229981968881475
FVHMTSLSL	9	Unmodified	_FVHMTSLSL_					0	0	0			REV__NPS|p.W22Lfs*9|1|0.15|ENSG00000214285|chr10:127549540-127549541|-/T|frameshift_variant	REV__NPS|p.W22Lfs*9|1|0.15|ENSG00000214285|chr10:127549540-127549541|-/T|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	517.770603	1033.52665	0.44969	0.00023284	-1.0188	-0.00052752	-0.56913	-0.00029468	517.7699968074776	94.328	0.66304	94.328	94.084	94.747	0	-0.0023553	-9.5653E-06	NaN	15.847	74	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825490	+		5347	11000	3589	3615							0.011229981968881475
FVHMTSLSL	9	Unmodified	_FVHMTSLSL_					0	0	0			REV__NPS|p.W22Lfs*9|1|0.15|ENSG00000214285|chr10:127549540-127549541|-/T|frameshift_variant	REV__NPS|p.W22Lfs*9|1|0.15|ENSG00000214285|chr10:127549540-127549541|-/T|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	517.770603	1033.52665	0.34555	0.00017892	-1.0026	-0.0005191	-0.65701	-0.00034018	517.7700115643133	94.295	0.69067	94.333	94.101	94.792	0.038086	0.0023553	7.2718E-06	NaN	15.847	64	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	797260	+		5348	11000	3589	3615							0.011229981968881475
FVHQGETEL	9	Unmodified	_FVHQGETEL_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2589721679688	2	530.258914	1058.50327	0.20375	0.00010804	0.42157	0.00022354	0.62532	0.00033158	530.2589105245291	36.269	1.1171	36.269	36.077	37.194	0					104	43	4	0	0	0	0.0046402	2	6191	6150;6191		85.642	52.856	1	471480			5349	1471	3590	3616	7386;7387	7387					-0.023637243160919752
FVHQGETEL	9	Unmodified	_FVHQGETEL_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.259033203125	2	530.258914	1058.50327	0.268	0.00014211	0.24829	0.00013166	0.51629	0.00027377	530.2589095900603	36.229	1.0473	36.31	36.023	37.07	0.081715					116	42	4	0	0	0	0.006264	2	6039	5996;6039		78.728	44.626	1	409410			5350	1471	3590	3616	7388;7389	7389					-0.023637243160919752
FVIGREEVL	9	Unmodified	_FVIGREEVL_					0	0	0		ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6	ENST00000427443.5_1_16:58550827-58552930:+|nuORF	ENST00000427443.5_1_16:58550827-58552930:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3038330078125	2	531.303124	1060.5917	0.18894	0.00010039	1.0802	0.00057391	1.2691	0.00067429	531.3039167816994	59.363	0.46153	59.363	59.194	59.656	0					42	17	3	0	0	0	0.07372	1	13175	13175		38.176	5.3899	1	310990			5351	1344	3591	3617	7390	7390					0.06382315994369492
FVIGREEVL	9	Unmodified	_FVIGREEVL_					0	0	0		ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6	ENST00000427443.5_1_16:58550827-58552930:+|nuORF	ENST00000427443.5_1_16:58550827-58552930:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3038330078125	2	531.303124	1060.5917	0.28681	0.00015238	0.8116	0.0004312	1.0984	0.00058359	531.3040055084184	59.23	0.59509	59.303	59.161	59.756	0.072342					40	23	3	0	0	0	0.065576	1	12997	12997		39.95	7.164	1	252000			5352	1344	3591	3617	7391	7391					0.06382315994369492
FVILVENAL	9	Unmodified	_FVILVENAL_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.30267333984375	2	509.302593	1016.59063	0.73914	0.00037644	-0.7476	-0.00038075	-0.0084651	-4.3113E-06	509.30232491508906	84.751	0.48734	84.751	84.614	85.101	0					25	20	2	0	0	0	0.22083	1	20945	20945		16.149	2.2431	1	162470			5353	758	3592	3618	7392	7392					0.08300101625468415
FVILVENAL	9	Unmodified	_FVILVENAL_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.302593	1016.59063	0.53169	0.00027079	-0.38486	-0.00019601	0.14683	7.478E-05	509.8038192344699	84.711	0.42735	84.734	84.608	85.035	0.023132	-0.0082023	0.00024586	NaN	16.149	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480400			5354	758	3592	3618							0.08300101625468415
FVIPGLQWF	9	Unmodified	_FVIPGLQWF_					0	0	0		nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8050537109375	2	553.805303	1105.59605	0.59608	0.00033011	-0.096441	-5.341E-05	0.49964	0.0002767	553.8052119324949	78.547	1.1376	78.577	78.2	79.338	0.030159					74	39	3	0	0	0	0.29105	1	18937	18937		7.9102	0	1	604140			5355	4331	3593	3619	7393	7393					0.047478252079372396
FVKQKYMNKKK	11	Unmodified	_FVKQKYMNKKK_					0	0	0		tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2838134765625	3	481.283118	1440.82753	0.075305	3.6243E-05	1.1352	0.00054636	1.2105	0.00058261	481.28363314233627	94.253	0.53232	94.291	94.079	94.611	0.038086					48	21	3	0	0	0	0.41693	1	23687	23687		0.45452	0.046251	1	225260			5356	13652	3594	3620	7394	7394					0.12474504847318713
FVLFPPFPF	9	Unmodified	_FVLFPPFPF_					0	0	0		ENST00000501011.6_1_11:82784390-82784510:+|nuORF;ENST00000526795.1_1_11:82784390-82788120:+|nuORF	ENST00000501011.6_1_11:82784390-82784510:+|nuORF	ENST00000501011.6_1_11:82784390-82784510:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3310546875	2	555.804771	1109.59499	0.51198	0.00028456	-1.0518	-0.00058461	-0.53985	-0.00030005	555.8041565960873	76.286	0.41915	76.286	76.195	76.615	0					22	15	2	0	0	0	0.24749	1	18370	18370		9.3474	0	1	342870			5357	6863	3595	3621	7395	7395					0.04457610839017434
FVLFPPFPF	9	Unmodified	_FVLFPPFPF_					0	0	0		ENST00000501011.6_1_11:82784390-82784510:+|nuORF;ENST00000526795.1_1_11:82784390-82788120:+|nuORF	ENST00000501011.6_1_11:82784390-82784510:+|nuORF	ENST00000501011.6_1_11:82784390-82784510:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	555.804771	1109.59499	0.61786	0.00034341	-1.1998	-0.00066683	-0.58191	-0.00032343	555.8038691449224	76.295	0.70523	76.334	76.205	76.911	0.03923	0.024034	-8.5532E-05	NaN	9.3474	29	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209810			5358	6863	3595	3621							0.04457610839017434
FVLIQNWLLY	10	Unmodified	_FVLIQNWLLY_					0	0	0		ENST00000498189.1_1_7:33573507-33573630:+|nuORF	ENST00000498189.1_1_7:33573507-33573630:+|nuORF	ENST00000498189.1_1_7:33573507-33573630:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.57025146484375	3	436.916541	1307.72779	-0.14501	-6.3358E-05	0.42174	0.00018426	0.27672	0.00012091	436.9169249643269	43.605	0.2368	43.694	43.581	43.818	0.088924					13	8	2	0	0	0	0.31852	1	8263	8263		0.69767	0	1	22825			5359	6851	3596	3622	7396	7396					0.08624010505036495
FVLKKIKKK	9	Unmodified	_FVLKKIKKK_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.4010009765625	2	566.402444	1130.79034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.4	1	112.4	111.9	112.9	0								0	0	0	0.29525	1	28788	28788		0	0	1				5360	899	3597	3623	7397	7397					0.23017201363882123
FVLKKIKKK	9	Unmodified	_FVLKKIKKK_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.4011840820312	2	566.402444	1130.79034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.69	1	112.69	112.19	113.19	0								0	0	0	0.29525	1	28876	28876		0	0	1				5361	899	3597	3623	7398	7398					0.23017201363882123
FVLKKIKKK	9	Unmodified	_FVLKKIKKK_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.3994750976562	2	566.402444	1130.79034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.7	1	112.7	112.2	113.2	0								0	0	0	0.2927	1	28879	28879		0.52476	0.52476	1				5362	899	3597	3623	7399	7399					0.23017201363882123
FVLKKIKKK	9	Unmodified	_FVLKKIKKK_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.4002075195312	2	566.402444	1130.79034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.51	1	112.53	112.03	113.03	0.014595								0	0	0	0.29525	1	28706	28706		0	0	1				5363	899	3597	3623	7400	7400					0.23017201363882123
FVLLLPYRIWR	11	Unmodified	_FVLLLPYRIWR_					0	0	0		ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.791748046875	3	492.634368	1474.88128	0.52991	0.00026105	0.0053923	2.6564E-06	0.53531	0.00026371	492.63427721075965	96.839	1.1527	96.879	96.51	97.663	0.039772					87	56	2	0	0	0	0.31101	1	24408	24408		0.08335	0	1	147780			5364	4743	3598	3624	7401	7401					0.16283045341356228
FVLMLLVLD	9	Unmodified	_FVLMLLVLD_					0	0	0		ENSG00000138944|ENST00000381176|SHISAL1	ENSG00000138944|ENST00000381176|SHISAL1	ENSG00000138944|ENST00000381176|SHISAL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2704467773438	2	531.817021	1061.61949	0.53975	0.00028705	0.012489	6.6417E-06	0.55224	0.00029369	531.8169329323181	82.717	2.2401	82.717	82.036	84.276	0					287	78	4	0	0	0	0.25644	1	20695	20695		3.9444	3.9444	1	1652200			5365	2946	3599	3625	7402	7402					0.09114502930242452
FVLQPKEKI	9	Unmodified	_FVLQPKEKI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197144100-197146141|494|10.03|0.52|4.28|-|0|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7610473632812	2	551.336967	1100.65938	0.41977	0.00023144	0.078072	4.3044E-05	0.49785	0.00027448	551.3368859828292	74.316	0.6933	74.316	74.074	74.767	0					41	25	3	0	0	0	0.24791	1	17655	17655		10.074	5.3179	1	271880			5366	698	3600	3626	7403	7403					0.11307765925175772
FVLQPKEKI	9	Unmodified	_FVLQPKEKI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197144100-197146141|494|10.03|0.52|4.28|-|0|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	551.336967	1100.65938	0.57235	0.00031556	-0.082815	-4.5659E-05	0.48954	0.0002699	551.3367178783889	74.264	0.51355	74.313	74.132	74.645	0.048546	-0.0016901	-9.3107E-05	NaN	10.074	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246860			5367	698	3600	3626							0.11307765925175772
FVLSEMALV	9	Oxidation (M)	_FVLSEM(Oxidation (M))ALV_		FVLSEM(1)ALV		FVLSEM(42)ALV	0	0	1		DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.274658203125	2	512.772811	1023.53107	0.39165	0.00020083	0.016417	8.4181E-06	0.40807	0.00020924	512.772643249345	75.13	0.98302	75.175	74.697	75.68	0.044037					62	35	2	0	0	0	0.05573	1	17909	17909		42.095	7.9921	1	407990			5368	282	3601	3627	7404	7404		11			0.020244626197836624
FVLVLTLTL	9	Unmodified	_FVLVLTLTL_					0	0	0			REV__nc|ENSG00000157693|Q5VZI3-2|TMEM268	REV__nc|ENSG00000157693|Q5VZI3-2|TMEM268	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8205261230469	2	509.830986	1017.64742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.71	1	105.71	105.21	106.21	0								0	0	0	0.24995	1	27238	27238		9.3474	2.9933	1		+		5369	9784	3602	3628	7405	7405					0.13930149181976503
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7638549804688	2	566.76384	1131.51313	-0.18033	-0.0001022	0.35872	0.00020331	0.17839	0.00010111	566.7640169616025	30.767	0.86251	30.767	30.55	31.412	0					75	42	3	0	0	0	0.28472	2	4532	4489;4532		8.7454	6.6857	1	76920			5370	2427	3603	3629	7406;7407	7407					-0.0473685958236274
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7639770507812	2	566.76384	1131.51313	-0.1276	-7.232E-05	0.38036	0.00021557	0.25275	0.00014325	566.7640374860371	30.718	0.51615	30.793	30.647	31.163	0.075405					70	28	3	0	0	0	0.26104	1	4393	4393		11.495	9.435	1	84885			5371	2427	3603	3629	7408	7408					-0.0473685958236274
FVNDDRHVM	9	Oxidation (M)	_FVNDDRHVM(Oxidation (M))_		FVNDDRHVM(1)		FVNDDRHVM(42)	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.76123046875	2	574.761297	1147.50804	0.011598	6.6659E-06	-0.059936	-3.4449E-05	-0.048338	-2.7783E-05	574.761220992743	23.155	0.87015	23.257	23.052	23.922	0.10178					171	83	3	0	0	0	0.054729	1	2238	2238		42.312	30.072	1	135100			5372	2427	3603	3630	7409	7409		154			-0.059811634449943085
FVNLEFLSL	9	Unmodified	_FVNLEFLSL_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.3005981445312	2	541.30005	1080.58555	0.53792	0.00029117	-0.17209	-9.3152E-05	0.36583	0.00019802	541.3000460682231	97.213	0.5877	97.213	96.851	97.438	0					63	28	3	0	0	0	0.11816	1	24746	24746		28.495	9.1326	1	256570			5373	2821	3604	3631	7410	7410					0.04847797762840855
FVNLEFLSL	9	Unmodified	_FVNLEFLSL_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.8015747070312	2	541.30005	1080.58555	0.65041	0.00035207	0.071502	3.8704E-05	0.72192	0.00039077	541.2999462890052	97.179	0.53752	97.22	97.076	97.614	0.040855					49	25	3	0	0	0	0.1646	1	24577	24577		22.658	6.509	1	122620			5374	2821	3604	3631	7411	7411					0.04847797762840855
FVNPKNTF	8	Unmodified	_FVNPKNTF_					0	0	0			REV__nc|ENSG00000136068|O75369-5|FLNB	REV__nc|ENSG00000136068|O75369-5|FLNB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7286376953125	2	483.75581	965.497067	0.18074	8.7436E-05	-0.11929	-5.7706E-05	0.061457	2.973E-05	483.7556650447173	68.691	0.60768	68.691	68.469	69.076	0					35	22	2	0	0	0	0.3576	1	16115	16115		8.5933	0.68312	1	122150	+		5375	9236	3605	3632	7412	7412					0.012938022430375895
FVPANDNANL	10	Unmodified	_FVPANDNANL_					0	0	0			REV__PCDHGA2|p.D234N|1|0.2|ENSG00000081853|chr5:141339671-141339671|G/A|missense_variant	REV__PCDHGA2|p.D234N|1|0.2|ENSG00000081853|chr5:141339671-141339671|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7642822265625	2	537.764363	1073.51417	0.22228	0.00011953	-0.27843	-0.00014973	-0.056152	-3.0196E-05	537.7640479915369	51.605	0.59052	51.605	51.295	51.886	0					55	19	4	0	0	0	0.36006	2	10819	10784;10819		16.149	2.2431	1	529790	+		5376	12953	3606	3633	7413;7414	7414					-0.019643219418185254
FVPANDNANL	10	Unmodified	_FVPANDNANL_					0	0	0			REV__PCDHGA2|p.D234N|1|0.2|ENSG00000081853|chr5:141339671-141339671|G/A|missense_variant	REV__PCDHGA2|p.D234N|1|0.2|ENSG00000081853|chr5:141339671-141339671|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7644653320312	2	537.764363	1073.51417	0.46955	0.00025251	-0.48659	-0.00026167	-0.017038	-9.1627E-06	537.7640202258967	51.541	0.51909	51.61	51.285	51.804	0.069874					62	19	4	0	0	0	0.38912	1	10637	10637		13.042	2.2185	1	425090	+		5377	12953	3606	3633	7415	7415					-0.019643219418185254
FVPLFAENL	9	Unmodified	_FVPLFAENL_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2;ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant	ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2869873046875	2	525.286943	1048.55933	0.080414	4.2241E-05	0.32382	0.0001701	0.40423	0.00021234	525.287092300086	91.264	0.99693	91.299	90.994	91.991	0.035446					74	35	4	0	0	0	0.18364	1	22693	22693		20.454	1.0146	1	1263200			5378	558	3607	3634	7416	7416					0.03699528591369017
FVPLHSFFL	9	Unmodified	_FVPLHSFFL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8056030273438	2	553.805303	1105.59605	0.39647	0.00021957	-0.085597	-4.7404E-05	0.31087	0.00017216	553.8052681302712	78.539	0.98268	78.539	78.205	79.188	0					70	33	3	0	0	0	0.092418	2	19011	19011;19062		34.102	14.845	1	405570			5379	5314	3608	3635	7417;7418	7417					0.04747825207959977
FVPLHSFFL	9	Unmodified	_FVPLHSFFL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.805419921875	2	553.805303	1105.59605	0.59608	0.00033011	-0.096441	-5.341E-05	0.49964	0.0002767	553.8052119324949	78.547	1.1376	78.577	78.2	79.338	0.030159					74	39	3	0	0	0	0.083504	1	18882	18882		36.044	19.102	1	604140			5380	5314	3608	3635	7419	7419					0.04747825207959977
FVPTSVFFL	9	Unmodified	_FVPTSVFFL_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.78466796875	2	528.791861	1055.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.517	1	98.517	98.017	99.017	0								0	0	0	0.23884	1	25094	25094		11.64	2.2929	1				5381	2012	3609	3636	7420	7420					0.04360716596761449
FVQLLQGVF	9	Unmodified	_FVQLLQGVF_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2470703125	2	525.80276	1049.59097	0.013182	6.931E-06	-4.4507	-0.0023402	-4.4375	-0.0023333	525.8004732340825	35.179	0.3409	35.258	35.142	35.483	0.078827					19	13	2	0	0	0	0.25875	1	5693	5693		1.8442	0.6509	1	28313			5382	3441	3610	3637	7421	7421					0.06815521345333764
FVRGLRYF	8	Unmodified	_FVRGLRYF_					0	0	0			REV__ENST00000461819.5_1_1:32670894-32670972:+|nuORF	REV__ENST00000461819.5_1_1:32670894-32670972:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.30029296875	2	529.300719	1056.58688	0.45187	0.00023918	-1.8032	-0.00095446	-1.3514	-0.00071528	529.299665628083	55.688	0.5364	55.688	55.411	55.948	0					33	18	2	0	0	0	0.51887	1	12041	12041		10.183	0.80027	1	124020	+		5383	11965	3611	3638	7422	7422					0.06085476642260801
FVRHESETT	9	Unmodified	_FVRHESETT_					0	0	0		ENSG00000106028|ENST00000265304|SSBP1;ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2682495117188	2	553.26727	1104.51999	0.098552	5.4526E-05	-0.23277	-0.00012879	-0.13422	-7.426E-05	553.2670139821189	30.172	2.0934	30.247	29.104	31.198	0.075403					168	124	2	0	0	0	0.3354	1	4231	4231		2.0598	0.40713	1	36098			5384	1503	3612	3639	7423	7423					-0.028092234301539065
FVRRYFPPK	9	Unmodified	_FVRRYFPPK_					0	0	0		DDX60|p.G1492V|1|0.22|ENSG00000137628|chr4:168236310-168236310|C/A|missense_variant	DDX60|p.G1492V|1|0.22|ENSG00000137628|chr4:168236310-168236310|C/A|missense_variant	DDX60|p.G1492V|1|0.22|ENSG00000137628|chr4:168236310-168236310|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.7420654296875	3	403.901226	1208.68185	-0.12199	-4.9271E-05	3.48	0.0014056	3.358	0.0013563	404.2362097333006	21.176	0.047695	21.276	21.251	21.299	0.099499					7	5	2	0	0	0	0.2553	1	1685	1685		5.2969	0	1	2980.7			5385	271	3613	3640	7424	7424					0.0858541011343732
FVSAAAQPRW	10	Unmodified	_FVSAAAQPRW_					0	0	0			REV__ENST00000264852.8_2_3:113251555-113251765:+|nuORF	REV__ENST00000264852.8_2_3:113251555-113251765:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7986450195312	2	566.79854	1131.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.7	1	100.74	100.24	101.24	0.042839								0	0	0	0.33443	1	25606	25606		6.7232	0.36906	1		+		5386	11255	3614	3641	7425	7425					0.021999674287144444
FVSIEVPII	9	Unmodified	_FVSIEVPII_					0	0	0			REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.80657958984375	2	508.804968	1015.59538	0.49883	0.00025381	0.98663	0.000502	1.4855	0.00075581	508.8055323949673	92.974	0.32166	93.011	92.949	93.271	0.037369					25	14	2	0	0	0	0.29576	1	23253	23253		7.2892	0	1	82908	+		5387	13249	3615	3642	7426	7426					0.08820985768238643
FVSIEVPII	9	Unmodified	_FVSIEVPII_					0	0	0			REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	508.804968	1015.59538	0.54318	0.00027637	1.1227	0.00057124	1.6659	0.00084761	509.30688447240533	93.101	0.54991	93.101	92.956	93.506	0	0.044964	4.6484E-05	NaN	7.2892	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64782	+		5388	13249	3615	3642							0.08820985768238643
FVSIEVPII	9	Unmodified	_FVSIEVPII_					0	0	0			REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	508.804968	1015.59538	0.49883	0.00025381	0.98663	0.000502	1.4855	0.00075581	508.8055323949673	92.974	0.32166	93.011	92.949	93.271	0.037369	-0.044964	-9.1992E-05	NaN	7.2892	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82908	+		5389	13249	3615	3642							0.08820985768238643
FVSPFLAW	8	Unmodified	_FVSPFLAW_					0	0	0			REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF	REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.2593688964844	2	483.757821	965.501089	0.038245	1.8501E-05	0.19301	9.337E-05	0.23125	0.00011187	483.7577990016786	77.302	0.95493	77.302	77.059	78.013	0					54	39	2	0	0	0	0.12982	3	18604	18604;18705;18762		49.669	8.1431	1	709260	+		5390	11291	3616	3643	7427;7428;7429	7427					0.01695891736756039
FVSPFLAW	8	Unmodified	_FVSPFLAW_					0	0	0			REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF	REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.2593688964844	2	483.757821	965.501089	0.038245	1.8501E-05	0.19301	9.337E-05	0.23125	0.00011187	483.7577990016786	77.302	0.95493	77.302	77.059	78.013	0					54	39	2	0	0	0	0.19868	1	18604	18604		49.669	6.7009	1	709260	+		5391	11291	3616	3643	7430	7430					0.01695891736756039
FVSPFLAW	8	Unmodified	_FVSPFLAW_					0	0	0			REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF	REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7579650878906	2	483.757821	965.501089	0.1487	7.1936E-05	0.16545	8.004E-05	0.31416	0.00015198	483.7577522218903	77.261	0.65778	77.295	77.017	77.675	0.034485					47	28	2	0	0	0	0.12982	3	18428	18428;18468;18519		49.669	17.363	1	966400	+		5392	11291	3616	3643	7431;7432;7433	7431					0.01695891736756039
FVSPFLAW	8	Unmodified	_FVSPFLAW_					0	0	0			REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF	REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2595520019531	2	483.757821	965.501089	0.1487	7.1936E-05	0.16545	8.004E-05	0.31416	0.00015198	483.7577522218903	77.261	0.65778	77.295	77.017	77.675	0.034485					47	28	2	0	0	0	0.19868	1	18468	18468		49.669	6.7009	1	966400	+		5393	11291	3616	3643	7434	7434					0.01695891736756039
FVSRHKKF	8	Unmodified	_FVSRHKKF_					0	0	0		ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2548217773438	2	524.806168	1047.59778	0.45625	0.00023944	-1.5485	-0.00081266	-1.0923	-0.00057322	524.8051772235278	70.884	0.38304	70.884	70.618	71.001	0					21	13	2	0	0	0	0.3576	1	16597	16597		6.3541	1.1234	1	66245			5394	4906	3617	3644	7435	7435					0.07588879016566352
FVSSPFSVFF	10	Unmodified	_FVSSPFSVFF_					0	0	0			REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense	REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2929077148438	2	582.292225	1162.5699	0.6617	0.00038531	0.41402	0.00024108	1.0757	0.00062639	582.2922741174311	77.25	1.1249	77.284	76.991	78.116	0.034485					86	44	3	0	0	0	0.37232	1	18538	18538		14.838	1.3304	1	1016300	+		5395	12702	3618	3645	7436	7436					-0.004884887541948046
FVSTIDLPNY	10	Unmodified	_FVSTIDLPNY_					0	0	0		nc|ENSG00000019991|P14210-3|HGF;ENSG00000019991|ENST00000222390|HGF	nc|ENSG00000019991|P14210-3|HGF	nc|ENSG00000019991|P14210-3|HGF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.822021484375	2	584.797872	1167.58119	0.6444	0.00037685	-0.45851	-0.00026813	0.18589	0.00010871	584.7975184040096	82.635	0.62561	82.657	82.475	83.1	0.021751					46	21	3	0	0	0	0.29345	1	20226	20226		24.021	2.4836	1	343350			5396	472	3619	3646	7437	7437					0.0041028854927844804
FVSTIDLPNY	10	Unmodified	_FVSTIDLPNY_					0	0	0		nc|ENSG00000019991|P14210-3|HGF;ENSG00000019991|ENST00000222390|HGF	nc|ENSG00000019991|P14210-3|HGF	nc|ENSG00000019991|P14210-3|HGF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	584.797872	1167.58119	0.67675	0.00039576	-0.4495	-0.00026287	0.22725	0.00013289	584.7975823600265	82.687	0.62523	82.687	82.454	83.079	0	0.015366	4.6126E-06	NaN	24.021	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374470			5397	472	3619	3646							0.0041028854927844804
FVSYWVTSA	9	Unmodified	_FVSYWVTSA_					0	0	0			REV__ENST00000481203.1_1_3:100463662-100466999:+|nuORF	REV__ENST00000481203.1_1_3:100463662-100466999:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2604370117188	2	530.260925	1058.5073	0.46908	0.00024874	0.06848	3.6312E-05	0.53756	0.00028505	530.260885151812	53.381	1.5205	53.446	52.825	54.346	0.06543					158	66	3	0	0	0	0.29105	1	11096	11096		7.9102	0	1	780180	+		5398	12088	3620	3647	7438	7438					-0.019616348223735258
FVTAGNRHI	9	Unmodified	_FVTAGNRHI_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENST00000515164.1_1_15:42103000-42104860:+|nuORF;nc|ENSG00000137802|O60336-5|MAPKBP1;ENST00000502292.5_1_15:42067473-42104860:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7780456542969	2	507.777608	1013.54066	0.24258	0.00012318	0.57639	0.00029268	0.81898	0.00041586	507.77787097906423	83.26	0.82143	83.282	83.017	83.838	0.021744					54	28	3	0	0	0	0.19398	1	20276	20276		19.257	19.257	1	455860			5399	2867	3621	3648	7439	7439					0.03443411740192914
FVTAGNRHI	9	Unmodified	_FVTAGNRHI_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENST00000515164.1_1_15:42103000-42104860:+|nuORF;nc|ENSG00000137802|O60336-5|MAPKBP1;ENST00000502292.5_1_15:42067473-42104860:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	507.777608	1013.54066	0.41916	0.00021284	0.7477	0.00037966	1.1669	0.0005925	507.77783656314125	83.186	0.58278	83.186	83.051	83.634	0	-0.047943	0.00011824	NaN	19.257	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210850			5400	2867	3621	3648							0.03443411740192914
FVTASILLCF	10	Unmodified	_FVTASILLCF_					0	0	0			REV__nc|ENSG00000170017|Q13740-2|ALCAM	REV__nc|ENSG00000170017|Q13740-2|ALCAM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2947387695312	2	557.304278	1112.594	0.38941	0.00021702	3.5083	0.0019552	3.8977	0.0021722	557.3062335315338	90.337	0.28307	90.337	90.184	90.467	0					12	10	2	0	0	0	0.27354	1	22630	22630		25.399	0.72543	1	130330	+		5401	10196	3622	3649	7440	7440					0.04221028407823724
FVTASILLCF	10	Unmodified	_FVTASILLCF_					0	0	0			REV__nc|ENSG00000170017|Q13740-2|ALCAM	REV__nc|ENSG00000170017|Q13740-2|ALCAM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.73046875	2	557.304278	1112.594	0.38941	0.00021702	3.5083	0.0019552	3.8977	0.0021722	557.3062335315338	90.337	0.28307	90.337	90.184	90.467	0					12	10	2	0	0	0	0.30541	1	22618	22618		19.257	4.6753	1	130330	+		5402	10196	3622	3649	7441	7441					0.04221028407823724
FVTASWSIF	9	Unmodified	_FVTASWSIF_					0	0	0		ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8057861328125	2	529.271293	1056.52803	0.3054	0.00016164	-0.22625	-0.00011975	0.079156	4.1895E-05	529.2713979347169	50.526	0.35683	50.599	50.5	50.857	0.07312					27	12	3	0	0	0	0.2446	1	10355	10355		7.2892	0	1	120410			5403	2029	3623	3650	7442	7442					0.002029555572789832
FVTICILLV	9	Unmodified	_FVTICILLV_					0	0	0			REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B	REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2862854003906	2	510.811739	1019.60893	0.1034	5.282E-05	2.6869	0.0013725	2.7903	0.0014253	511.3147530983034	89.917	0.23955	89.951	89.796	90.035	0.034065					14	8	2	0	0	0	0.31496	1	22341	22341		4.756	0	1	222930	+		5404	9582	3624	3651	7443	7443					0.09990520275835024
FVTICILLV	9	Unmodified	_FVTICILLV_					0	0	0			REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B	REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	510.811739	1019.60893	0.17731	9.0572E-05	2.4767	0.0012651	2.654	0.0013557	510.8130191482296	89.953	0.18259	89.953	89.834	90.017	0	0.0010427	-3.8668E-05	NaN	4.756	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134030	+		5405	9582	3624	3651							0.09990520275835024
FVTICILLV	9	Unmodified	_FVTICILLV_					0	0	0			REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B	REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	510.811739	1019.60893	0.1034	5.282E-05	2.6869	0.0013725	2.7903	0.0014253	511.3147530983034	89.917	0.23955	89.951	89.796	90.035	0.034065	-0.0010427	0.00017616	NaN	4.756	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222930	+		5406	9582	3624	3651							0.09990520275835024
FVTSIDVVL	9	Unmodified	_FVTSIDVVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7868347167969	2	496.786776	991.558998	0.61005	0.00030307	-0.18822	-9.3504E-05	0.42184	0.00020956	496.78652625762663	83.272	1.2867	83.272	82.928	84.215	0					79	43	3	0	0	0	0.004452	5	20435	20435;20487;20533;20564;20587		92.822	56.778	1	737350			5407	2791	3625	3652	7444;7445;7446;7447;7448	7444					0.062881088715244
FVTSIDVVL	9	Unmodified	_FVTSIDVVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.78704833984375	2	496.786776	991.558998	0.36879	0.00018321	0.14426	7.1665E-05	0.51304	0.00025487	496.7867395926872	83.269	1.2592	83.291	82.958	84.217	0.021744					105	44	4	0	0	0	0.0042542	4	20324	20274;20324;20366;20414		100.37	64.327	1	1875600			5408	2791	3625	3652	7449;7450;7451;7452	7450					0.062881088715244
FVTTFVKPL	9	Unmodified	_FVTTFVKPL_					0	0	0			REV__ENST00000204566.6_1_15:65255658-65255769:-|nuORF	REV__ENST00000204566.6_1_15:65255658-65255769:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.299560546875	2	526.312961	1050.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.251	1	98.293	97.793	98.793	0.041931								0	0	0	0.25692	1	24861	24861		7.9102	0	1		+		5409	11166	3626	3653	7453	7453					0.08808692005140983
FVTTIAYSI	9	Unmodified	_FVTTIAYSI_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2546691894531	2	507.778951	1013.54335	0.58086	0.00029495	-2.6427	-0.0013419	-2.0618	-0.0010469	507.77737311753253	83.874	0.55618	83.874	83.658	84.215	0					22	18	2	0	0	0	0.24635	1	20719	20719		10.824	2.9138	1	34880			5410	1142	3627	3654	7454	7454					0.03711822354478045
FVTWIEGVM	9	Oxidation (M)	_FVTWIEGVM(Oxidation (M))_		FVTWIEGVM(1)		FVTWIEGVM(100)	0	0	1		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2705078125	2	549.270435	1096.52632	0.35997	0.00019772	1.0623	0.00058349	1.4223	0.00078121	549.2706003367532	77.705	0.68356	77.705	77.389	78.073	0					49	24	3	0	0	0	0.0042542	1	18757	18757		100.37	78.835	1	301590			5411	2174	3628	3655	7455	7455		134			-0.018084215229691836
FVTWIEGVM	9	Oxidation (M)	_FVTWIEGVM(Oxidation (M))_		FVTWIEGVM(1)		FVTWIEGVM(110)	0	0	1		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2713012695312	2	549.270435	1096.52632	0.84469	0.00046396	0.82795	0.00045477	1.6726	0.00091873	549.2705916793363	80.035	1.1035	80.035	79.739	80.843	0					78	38	3	0	0	0	0.0025191	1	19490	19490		112.59	88.573	1	347200			5412	2174	3628	3655	7456	7456		134			-0.018084215229691836
FVTWIEGVM	9	Oxidation (M)	_FVTWIEGVM(Oxidation (M))_		FVTWIEGVM(1)		FVTWIEGVM(82)	0	0	1		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.270263671875	2	549.270435	1096.52632	0.53203	0.00029223	0.47384	0.00026027	1.0059	0.0005525	549.2705685997626	77.646	0.56056	77.68	77.465	78.026	0.034485					33	18	2	0	0	0	0.0053304	1	18600	18600		81.613	60.076	1	239170			5413	2174	3628	3655	7457	7457		134			-0.018084215229691836
FVTWIEGVM	9	Oxidation (M)	_FVTWIEGVM(Oxidation (M))_		FVTWIEGVM(1)		FVTWIEGVM(89)	0	0	1		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2718505859375	2	549.270435	1096.52632	0.58673	0.00032228	-0.3636	-0.00019972	0.22313	0.00012256	549.2697303303996	79.991	1.0631	80.018	79.71	80.773	0.026436					57	37	3	0	0	0	0.00047959	1	19338	19338		88.904	54.801	1	283710			5414	2174	3628	3655	7458	7458		134			-0.018084215229691836
FVTWIEGVM	9	Unmodified	_FVTWIEGVM_					0	0	0		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2720947265625	2	541.272978	1080.5314	0.33398	0.00018077	-0.31269	-0.00016925	0.021284	1.152E-05	541.2728345475084	88.903	0.37799	88.903	88.791	89.169	0					25	14	2	0	0	0	0.23216	1	22193	22193		14.838	6.9281	1	93842			5415	2174	3628	3656	7459	7459					-0.005641176603376152
FVTWIEGVM	9	Unmodified	_FVTWIEGVM_					0	0	0		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	541.272978	1080.5314	0.41795	0.00022622	-0.78541	-0.00042512	-0.36747	-0.0001989	541.2724779880086	88.83	0.49423	88.862	88.703	89.198	0.032265	-0.020414	-0.00024959	NaN	14.838	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82815			5416	2174	3628	3656							-0.005641176603376152
FVVEHDFIM	9	Oxidation (M)	_FVVEHDFIM(Oxidation (M))_		FVVEHDFIM(1)		FVVEHDFIM(110)	0	0	1		ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENST00000510321.1_1_4:146044588-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.7736206054688	2	576.773342	1151.53213	0.41819	0.0002412	0.40439	0.00023324	0.82258	0.00047444	576.7735851562107	57.795	0.67572	57.795	57.541	58.217	0					58	23	3	0	0	0	0.0025191	4	12678	12678;12687;12729;12755		112.59	93.336	1	749820			5417	3984	3629	3657	7460;7461;7462;7463	7460		245			-0.03757323011313929
FVVEHDFIM	9	Oxidation (M)	_FVVEHDFIM(Oxidation (M))_		FVVEHDFIM(1)		FVVEHDFIM(110)	0	0	1		ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENST00000510321.1_1_4:146044588-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.773681640625	2	576.773342	1151.53213	0.20038	0.00011557	0.18771	0.00010827	0.38809	0.00022384	576.7734640502298	59.223	1.7892	59.223	58.931	60.72	0					144	67	3	0	0	0	0.0030029	3	13132	13088;13132;13182		109.63	89.176	1	650950			5418	3984	3629	3657	7464;7465;7466	7465		245			-0.03757323011313929
FVVEHDFIM	9	Oxidation (M)	_FVVEHDFIM(Oxidation (M))_		FVVEHDFIM(1)		FVVEHDFIM(78)	0	0	1		ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENST00000510321.1_1_4:146044588-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.773681640625	2	576.773342	1151.53213	0.35467	0.00020457	0.21691	0.00012511	0.57159	0.00032968	576.7735099542076	57.726	0.71491	57.795	57.467	58.182	0.068375					61	26	4	0	0	0	0.0065046	3	12552	12508;12552;12573		77.984	62.137	1	742570			5419	3984	3629	3657	7467;7468;7469	7468		245			-0.03757323011313929
FVVEHDFIM	9	Oxidation (M)	_FVVEHDFIM(Oxidation (M))_		FVVEHDFIM(1)		FVVEHDFIM(85)	0	0	1		ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENST00000510321.1_1_4:146044588-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.7734985351562	2	576.773342	1151.53213	0.22321	0.00012874	0.11305	6.5205E-05	0.33626	0.00019395	576.7733347973473	59.151	1.3431	59.223	58.919	60.262	0.072338					125	52	3	0	0	0	0.0046476	2	12967	12926;12967		85.357	59.957	1	537920			5420	3984	3629	3657	7470;7471	7471		245			-0.03757323011313929
FVVEKVLDR	9	Unmodified	_FVVEKVLDR_					0	0	0		ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7684326171875	2	552.824224	1103.63389	-0.10572	-5.8446E-05	-0.29901	-0.0001653	-0.40473	-0.00022374	552.8240301409575	45.455	0.20202	45.455	45.328	45.53	0					11	6	2	0	0	0	0.24101	1	8936	8936		15.248	7.3383	1	26042			5421	2186	3630	3658	7472	7472					0.08622291402753035
FVVFFAIYL	9	Unmodified	_FVVFFAIYL_					0	0	0		ENSG00000232382|ENST00000642057|OR5K1;ENSG00000231861|ENST00000427338|OR5K2;ENSG00000206536|ENST00000383695|OR5K3	ENSG00000232382|ENST00000642057|OR5K1	ENSG00000232382|ENST00000642057|OR5K1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8160400390625	2	559.817879	1117.6212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.82	1	77.82	77.32	78.32	0								0	0	0	0.22377	1	18799	18799		14.582	0	1				5422	5534	3631	3659	7473	7473					0.06709880010498637
FVVFFAIYL	9	Unmodified	_FVVFFAIYL_					0	0	0		ENSG00000232382|ENST00000642057|OR5K1;ENSG00000231861|ENST00000427338|OR5K2;ENSG00000206536|ENST00000383695|OR5K3	ENSG00000232382|ENST00000642057|OR5K1	ENSG00000232382|ENST00000642057|OR5K1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8162231445312	2	559.817879	1117.6212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.744	1	77.778	77.278	78.278	0.034485								0	0	0	0.18155	1	18617	18617		20.871	3.9289	1				5423	5534	3631	3659	7474	7474					0.06709880010498637
FVVHITDVL	9	Unmodified	_FVVHITDVL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7315063476562	2	521.800217	1041.58588	0.41082	0.00021436	-0.13997	-7.3034E-05	0.27085	0.00014133	521.8001240678835	71.325	0.29346	71.325	71.181	71.474	0					16	9	2	0	0	0	0.23598	1	16799	16799		15.847	15.847	1	176640			5424	4038	3632	3660	7475	7475					0.0667521748271156
FVVHITDVL	9	Unmodified	_FVVHITDVL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7312622070312	2	521.800217	1041.58588	0.37646	0.00019644	0.025568	1.3342E-05	0.40203	0.00020978	521.8001937174805	71.266	0.35555	71.324	71.108	71.464	0.058578					21	12	2	0	0	0	0.25281	1	16617	16617		6.7232	6.7232	1	152560			5425	4038	3632	3660	7476	7476					0.0667521748271156
FVVYDGAVFF	10	Unmodified	_FVVYDGAVFF_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2929077148438	2	582.292225	1162.5699	0.45375	0.00026422	0.63077	0.00036729	1.0845	0.00063151	582.2923806353135	77.298	1.2975	77.298	76.975	78.272	0					93	51	3	0	0	0	0.3077	1	18659	18659		21.747	0	1	970590			5426	1987	3633	3661	7477	7477					-0.004884887541948046
FVVYDGAVFF	10	Unmodified	_FVVYDGAVFF_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7955322265625	2	582.292225	1162.5699	0.6617	0.00038531	0.41402	0.00024108	1.0757	0.00062639	582.2922741174311	77.25	1.1249	77.284	76.991	78.116	0.034485					86	44	3	0	0	0	0.3077	1	18448	18448		21.747	0	1	1016300			5427	1987	3633	3661	7478	7478					-0.004884887541948046
FVWNGRLF	8	Unmodified	_FVWNGRLF_					0	0	0			REV__LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|26|1|anti-sense	REV__LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|26|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.7673950195312	2	519.779619	1037.54469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.805	1	88.837	88.337	89.337	0.032257								0	0	0	0.38822	1	21980	21980		11.114	1.7313	1		+		5428	12725	3634	3662	7479	7479					0.02741501233890631
FVYFICENI	9	Unmodified	_FVYFICENI_					0	0	0		tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.27880859375	2	574.27826	1146.54197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.666	1	81.666	81.166	82.166	0								0	0	0	0.25287	1	19971	19971		8.7454	0.83525	1				5429	13460	3635	3663	7480	7480					-0.02544135005928183
FVYKRLKER	9	Unmodified	_FVYKRLKER_					0	0	0			REV__ENSG00000213213|ENST00000338005|CCDC183	REV__ENSG00000213213|ENST00000338005|CCDC183	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8717041015625	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.711	1	37.711	37.211	38.211	0								0	0	0	0.28724	1	6603	6603		1.6526	0	1		+		5430	10993	3636	3664	7481	7481					0.1201706431365892
FVYLNHCEN	9	Unmodified	_FVYLNHCEN_					0	0	0			REV__ENST00000267339.6_1_13:111531801-111531978:-|nuORF	REV__ENST00000267339.6_1_13:111531801-111531978:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.754638671875	2	569.752941	1137.49133	0.67336	0.00038365	1.1917	0.00067899	1.8651	0.0010626	569.7537504878082	65.923	0.70418	65.923	65.704	66.408	0					53	24	3	0	0	0	0.3182	1	15215	15215		4.3292	0.13973	1	635810	+		5431	11266	3637	3665	7482	7482					-0.07191664330935055
FVYMYVHTAD	10	Unmodified	_FVYMYVHTAD_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.7849731445312	2	623.284074	1244.5536	0.48123	0.00029994	-2.0315	-0.0012662	-1.5503	-0.00096628	623.2824942464291	81.605	0.54677	81.605	81.461	82.008	0					42	18	3	0	0	0	0.40987	1	19962	19962		10.824	2.0785	1	200700	+		5432	9405	3638	3666	7483	7483					-0.058899379825788856
FVYMYVHTAD	10	Unmodified	_FVYMYVHTAD_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.7855224609375	2	623.284074	1244.5536	0.28257	0.00017612	-1.8413	-0.0011476	-1.5587	-0.00097153	623.2827334877661	81.594	0.37073	81.616	81.475	81.846	0.021866					25	13	2	0	0	0	0.40987	2	19775	19775;19782		10.824	5.0921	1	217670	+		5433	9405	3638	3666	7484;7485	7484					-0.058899379825788856
FVYMYVHTAD	10	Unmodified	_FVYMYVHTAD_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	623.284074	1244.5536	0.48123	0.00029994	-2.0315	-0.0012662	-1.5503	-0.00096628	623.2824942464291	81.605	0.54677	81.605	81.461	82.008	0	-0.0055065	-0.00013591	NaN	10.824	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200700	+		5434	9405	3638	3666							-0.058899379825788856
FVYQSLTQI	9	Unmodified	_FVYQSLTQI_					0	0	0			REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8131713867188	2	549.795132	1097.57571	0.16047	8.8227E-05	0.66871	0.00036766	0.82919	0.00045588	549.7958929766492	73.582	0.74017	73.582	73.313	74.053	0					90	26	4	0	0	0	0.026209	1	17519	17519		53.833	0.42879	1	2583500	+		5435	11785	3639	3667	7486	7486					0.030826097574845335
FVYRNESIIPL	11	Unmodified	_FVYRNESIIPL_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.9186706542969	3	450.918722	1349.73434	0.14421	6.5027E-05	-0.20202	-9.1094E-05	-0.05781	-2.6067E-05	450.9186351559682	60.923	0.41683	60.996	60.879	61.296	0.073421					17	13	2	0	0	0	0.40738	1	13531	13531		2.6312	0	1	109160			5436	2647	3640	3668	7487	7487					0.07345903665759579
FVYRNESIIPL	11	Unmodified	_FVYRNESIIPL_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	450.918722	1349.73434	0.50909	0.00022956	-0.40662	-0.00018335	0.10247	4.6207E-05	451.25291901224267	61.072	0.41996	61.072	60.885	61.305	0	0.038209	-0.00014265	NaN	2.6312	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120740			5437	2647	3640	3668							0.07345903665759579
FVYTVPIASL	10	Unmodified	_FVYTVPIASL_					0	0	0			REV__ENSG00000136404|ENST00000322019|TM6SF1	REV__ENSG00000136404|ENST00000322019|TM6SF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7581176757812	2	555.3157	1108.61685	0.72156	0.0004007	-0.38081	-0.00021147	0.34076	0.00018923	555.3152148251248	70.302	0.41238	70.362	70.065	70.477	0.060562					23	16	2	0	0	0	0.31794	1	16290	16290		3.5965	0	1	104540	+		5438	9242	3641	3669	7488	7488					0.06688370796928211
FWDLAQQL	8	Unmodified	_FWDLAQQL_					0	0	0			REV__FUT2|p.R221Q|1|0.19|ENSG00000176920|chr19:48703618-48703618|G/A|missense_variant	REV__FUT2|p.R221Q|1|0.19|ENSG00000176920|chr19:48703618-48703618|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7601013183594	2	510.761092	1019.50763	-0.12829	-6.5525E-05	-0.25992	-0.00013276	-0.38821	-0.00019828	510.7609108774678	31.231	0.73049	31.231	31.001	31.731	0					54	33	2	0	0	0	0.53894	1	4736	4736		2.0598	0.21551	1	23062	+		5439	10417	3642	3670	7489	7489					-0.0013421510253692759
FWDLAQQL	8	Unmodified	_FWDLAQQL_					0	0	0			REV__FUT2|p.R221Q|1|0.19|ENSG00000176920|chr19:48703618-48703618|G/A|missense_variant	REV__FUT2|p.R221Q|1|0.19|ENSG00000176920|chr19:48703618-48703618|G/A|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	510.761092	1019.50763	-0.12829	-6.5525E-05	-0.25992	-0.00013276	-0.38821	-0.00019828	510.7609108774678	31.231	0.73049	31.231	31.001	31.731	0	0.023053	5.0368E-05	NaN	2.0598	54	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23062	+		5440	10417	3642	3670							-0.0013421510253692759
FWDLAQQL	8	Unmodified	_FWDLAQQL_					0	0	0			REV__FUT2|p.R221Q|1|0.19|ENSG00000176920|chr19:48703618-48703618|G/A|missense_variant	REV__FUT2|p.R221Q|1|0.19|ENSG00000176920|chr19:48703618-48703618|G/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	510.761092	1019.50763	-0.08197	-4.1867E-05	-0.37858	-0.00019336	-0.46055	-0.00023523	510.76086090456675	31.111	0.44547	31.185	31.069	31.515	0.07378	-0.023053	-7.0843E-05	NaN	2.0598	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22811	+		5441	10417	3642	3670							-0.0013421510253692759
FWDPSVNLF	9	Unmodified	_FWDPSVNLF_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7747192382812	2	562.7742	1123.53385	0.36529	0.00020557	-1.02	-0.000574	-0.65467	-0.00036843	562.7739237655205	91.675	0.65633	91.71	91.361	92.017	0.035446					29	17	2	0	0	0	0.02293	1	22858	22858		56.177	16.22	1	274820			5442	334	3643	3671	7490	7490					-0.022979459310590755
FWDTSPLLL	9	Unmodified	_FWDTSPLLL_					0	0	0		nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3	nc|ENSG00000168056|Q9NS15-2|LTBP3	nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7830200195312	2	546.292225	1090.5699	0.35886	0.00019604	0.74435	0.00040663	1.1032	0.00060268	546.2926852305523	94.807	0.43253	94.807	94.566	94.998	0					27	16	2	0	0	0	0.21398	1	23977	23977		16.942	2.104	1	75065			5443	4258	3644	3672	7491	7491					0.028235112458105505
FWEERDIM	8	Unmodified	_FWEERDIM_					0	0	0		ROCK1-DCC|1|fusion;ENST00000582445.1_1_18:18625251-18629157:-|nuORF;ROCK1|p.D202Cfs*9|1|0.26|ENSG00000067900|chr18:21044168-21044174|GTTATCA/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ENSG00000134318|ENST00000315872|ROCK2	ROCK1-DCC|1|fusion	ROCK1-DCC|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2527465820312	2	563.255317	1124.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.041	1	20.041	19.541	20.541	0								0	0	0	0.38822	1	1500	1500		0.69038	0	1				5444	13351	3645	3673	7492	7492					-0.061187801881942505
FWEERDIM	8	Unmodified	_FWEERDIM_					0	0	0		ROCK1-DCC|1|fusion;ENST00000582445.1_1_18:18625251-18629157:-|nuORF;ROCK1|p.D202Cfs*9|1|0.26|ENSG00000067900|chr18:21044168-21044174|GTTATCA/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ENSG00000134318|ENST00000315872|ROCK2	ROCK1-DCC|1|fusion	ROCK1-DCC|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2534790039062	2	563.255317	1124.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.839	1	19.935	19.435	20.435	0.095232								0	0	0	0.38822	1	1364	1364		0.69038	0	1				5445	13351	3645	3673	7493	7493					-0.061187801881942505
FWEFFINFYYI	11	Unmodified	_FWEFFINFYYI_					0	0	0			REV__tr|U7SJQ7|U7SJQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02056PE=4SV=1	REV__tr|U7SJQ7|U7SJQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02056PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7744750976562	3	530.255223	1587.74384	0.74112	0.00039298	-3.6613	-0.0019414	-2.9202	-0.0015485	530.5873630056461	67.528	0.080833	67.593	67.527	67.608	0.065071					4	2	2	0	0	0	0.4167	1	15501	15501		0.50596	0.051438	1	72041	+		5446	13068	3646	3674	7494	7494					-0.026523280487026568
FWFCFSWGI	9	Unmodified	_FWFCFSWGI_					0	0	0		nc|ENSG00000132424|Q8TF01-2|PNISR	nc|ENSG00000132424|Q8TF01-2|PNISR	nc|ENSG00000132424|Q8TF01-2|PNISR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7689819335938	2	596.767863	1191.52117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.109	1	40.198	39.698	40.698	0.088562								0	0	0	0.28631	1	7200	7200		1.8442	0.19162	1				5447	7502	3647	3675	7495	7495					-0.06692680594937883
FWFVLCVH	8	Unmodified	_FWFVLCVH_					0	0	0		ENST00000608304.5_2_3:73674880-73675039:+|nuORF	ENST00000608304.5_2_3:73674880-73675039:+|nuORF	ENST00000608304.5_2_3:73674880-73675039:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7652587890625	2	525.765123	1049.51569	-0.42021	-0.00022093	1.4665	0.00077101	1.0462	0.00055008	525.7657905299244	16.094	0.25049	16.094	15.951	16.202	0					46	30	2	0	0	0	0.54081	1	664	664		0.79363	0.10326	1	15776			5448	7318	3648	3676	7496	7496					-0.0070835938674918
FWGFLFGLLFF	11	Unmodified	_FWGFLFGLLFF_					0	0	0			REV__nc|ENSG00000086205|Q04609-3|FOLH1	REV__nc|ENSG00000086205|Q04609-3|FOLH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.5849304199219	3	465.249632	1392.72707	0.43363	0.00020174	1.313	0.00061085	1.7466	0.00081259	465.25018655373555	60.769	0.91082	60.769	60.507	61.418	0					71	32	3	0	0	0	0.31274	3	13575	13575;13621;13681		16.566	7.5896	1	1239200	+		5449	8271	3649	3677	7497;7498;7499	7497					0.0464121585596331
FWGFLFGLLFF	11	Unmodified	_FWGFLFGLLFF_					0	0	0			REV__nc|ENSG00000086205|Q04609-3|FOLH1	REV__nc|ENSG00000086205|Q04609-3|FOLH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2504577636719	3	465.249632	1392.72707	0.43363	0.00020174	1.313	0.00061085	1.7466	0.00081259	465.25018655373555	60.769	0.91082	60.769	60.507	61.418	0					71	32	3	0	0	0	0.3103	1	13621	13621		8.4443	2.6609	1	1239200	+		5450	8271	3649	3677	7500	7500					0.0464121585596331
FWGFLFGLLFF	11	Unmodified	_FWGFLFGLLFF_					0	0	0			REV__nc|ENSG00000086205|Q04609-3|FOLH1	REV__nc|ENSG00000086205|Q04609-3|FOLH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.2502136230469	3	465.249632	1392.72707	0.033206	1.5449E-05	1.9631	0.00091335	1.9963	0.0009288	465.2503335788878	60.563	1.0075	60.636	60.427	61.435	0.073421					69	34	3	0	0	0	0.38189	2	13390	13390;13448		8.4443	2.6609	1	360930	+		5451	8271	3649	3677	7501;7502	7501					0.0464121585596331
FWGFLFGLLFF	11	Unmodified	_FWGFLFGLLFF_					0	0	0			REV__nc|ENSG00000086205|Q04609-3|FOLH1	REV__nc|ENSG00000086205|Q04609-3|FOLH1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	465.249632	1392.72707	0.033206	1.5449E-05	1.9631	0.00091335	1.9963	0.0009288	465.2503335788878	60.563	1.0075	60.636	60.427	61.435	0.073421	-0.06633	0.00065008	NaN	16.566	69	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360930	+		5452	8271	3649	3677							0.0464121585596331
FWHIYKYT	8	Unmodified	_FWHIYKYT_					0	0	0			REV__ENST00000395965.7_2_5:92954874-92955120:-|nuORF	REV__ENST00000395965.7_2_5:92954874-92955120:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2927856445312	2	579.292559	1156.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.73	1	115.73	115.23	116.23	0								0	0	0	0.38822	1	29495	29495		0.6015	0	1		+		5453	11721	3650	3678	7503	7503					-0.0014564931448148855
FWIPRPFW	8	Unmodified	_FWIPRPFW_					0	0	0		ENST00000479967.5_1_3:127434467-127541990:-|nuORF	ENST00000479967.5_1_3:127434467-127541990:-|nuORF	ENST00000479967.5_1_3:127434467-127541990:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7921142578125	2	574.805637	1147.59672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.083	1	40.171	39.671	40.671	0.088562								0	0	0	0.38822	1	7192	7192		0.79363	0.10326	1				5454	6739	3651	3679	7504	7504					0.028826646476545648
FWKYKRYN	8	Unmodified	_FWKYKRYN_					0	0	0		ENST00000444316.2_2_4:102735054-102750992:+|nuORF	ENST00000444316.2_2_4:102735054-102750992:+|nuORF	ENST00000444316.2_2_4:102735054-102750992:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2506713867188	2	602.816733	1203.61891	0.66161	0.00039883	-2.3082	-0.0013914	-1.6465	-0.00099256	603.3170022795889	97.163	0.053665	97.163	97.142	97.196	0					4	2	2	0	0	0	0.3576	1	24680	24680		0.69038	0	1	19268			5455	6536	3652	3680	7505	7505					0.025248443254440645
FWLFAWFA	8	Unmodified	_FWLFAWFA_					0	0	0			REV__nc|ENSG00000100321|O43759-2|SYNGR1	REV__nc|ENSG00000100321|O43759-2|SYNGR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7623291015625	2	544.273638	1086.53272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.96	1	104.96	104.46	105.46	0								0	0	0	0.38822	1	27022	27022		0.79363	0.10326	1		+		5456	8383	3653	3681	7506	7506					-0.007081155092919289
FWLFAWFA	8	Unmodified	_FWLFAWFA_					0	0	0			REV__nc|ENSG00000100321|O43759-2|SYNGR1	REV__nc|ENSG00000100321|O43759-2|SYNGR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2738647460938	2	544.273638	1086.53272	0.48579	0.0002644	-0.21572	-0.00011741	0.27006	0.00014699	544.2733085638404	101.37	0.41364	101.41	101.23	101.64	0.042656					45	25	2	0	0	0	0.54081	1	25836	25836		0.79363	0.10326	1	91475	+		5457	8383	3653	3681	7507	7507					-0.007081155092919289
FWNSLGGKKD	10	Unmodified	_FWNSLGGKKD_					0	0	0		nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN	nc|ENSG00000006747|Q9Y6U3-3|SCIN	nc|ENSG00000006747|Q9Y6U3-3|SCIN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2948608398438	2	576.29583	1150.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.76	1	102.8	102.3	103.3	0.040916								0	0	0	0.3366	1	26219	26219		4.1895	0.59301	1				5458	375	3654	3682	7508	7508					0.007842438462375867
FWPEQNIKD	9	Unmodified	_FWPEQNIKD_					0	0	0		ENSG00000197372|ENST00000359788|ZNF675	ENSG00000197372|ENST00000359788|ZNF675	ENSG00000197372|ENST00000359788|ZNF675	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3380126953125	2	588.787838	1175.56112	-0.048099	-2.832E-05	-0.59833	-0.00035229	-0.64643	-0.00038061	588.7873449974359	25.693	0.36637	25.693	25.514	25.881	0					47	27	3	0	0	0	0.25845	1	3028	3028		2.0598	0.21551	1	35072			5459	5291	3655	3683	7509	7509					-0.019634623906767956
FWPPYVELL	9	Unmodified	_FWPPYVELL_					0	0	0		ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.3106079101562	2	582.310418	1162.60628	0.59439	0.00034612	-0.27578	-0.00016059	0.31861	0.00018553	582.3102100060195	99.839	0.49059	99.839	99.688	100.18	0					40	26	2	0	0	0	0.05573	1	25494	25494		42.095	28.189	1	305170			5460	2210	3656	3684	7510	7510					0.03148388142517433
FWPPYVELL	9	Unmodified	_FWPPYVELL_					0	0	0		ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.311279296875	2	582.310418	1162.60628	0.74005	0.00043094	0.16438	9.5718E-05	0.90443	0.00052666	582.3103355939593	99.761	0.24674	99.803	99.709	99.956	0.042831					22	18	2	0	0	0	0.05573	2	25313	25313;25360		42.095	19.436	1	365160			5461	2210	3656	3684	7511;7512	7511					0.03148388142517433
FWPSLPSYL	9	Unmodified	_FWPSLPSYL_					0	0	0		ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2854614257812	2	555.286943	1108.55933	0.7471	0.00041485	-1.21	-0.00067192	-0.46295	-0.00025707	555.2857881773737	93.236	0.50623	93.274	93.028	93.534	0.037369					34	22	2	0	0	0	0.17247	1	23338	23338		21.747	10.106	1	82054			5462	4172	3657	3685	7513	7513					0.009395285913797125
FWPTRETFF	9	Unmodified	_FWPTRETFF_					0	0	0			REV__ENST00000517635.2_1_7:27155632-27161591:+|nuORF	REV__ENST00000517635.2_1_7:27155632-27161591:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.8777160644531	3	410.869591	1229.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.628	1	31.628	31.128	32.128	0								0	0	0	0.28527	1	4781	4781		1.0715	0.44464	1		+		5463	12283	3658	3686	7514	7514					-0.018665681484208108
FWRLLCTL	8	Unmodified	_FWRLLCTL_					0	0	0		ENST00000299980.8_2_16:71766487-71766874:-|nuORF	ENST00000299980.8_2_16:71766487-71766874:-|nuORF	ENST00000299980.8_2_16:71766487-71766874:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.8082885742188	2	526.291505	1050.56846	-0.17702	-9.3166E-05	2.7715	0.0014586	2.5945	0.0013654	526.2927257625233	30.795	0.25595	30.869	30.77	31.026	0.073782					13	12	2	0	0	0	0.3576	1	4437	4437		2.3027	0	1	11598			5464	5971	3659	3687	7515	7515					0.045195986760745654
FWRYKATRK	9	Unmodified	_FWRYKATRK_					0	0	0			REV__ENSG00000131183|ENST00000324417|SLC34A1	REV__ENSG00000131183|ENST00000324417|SLC34A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5558776855469	3	419.24013	1254.69856	-0.57704	-0.00024192	-1.4129	-0.00059235	-1.99	-0.00083427	419.2392808946235	41.641	0.39381	41.731	41.573	41.967	0.089764					30	15	3	0	0	0	0.25982	1	7731	7731		0.86438	0	1	91218	+		5465	9080	3660	3688	7516	7516					0.08139910999375388
FWRYKATRK	9	Unmodified	_FWRYKATRK_					0	0	0			REV__ENSG00000131183|ENST00000324417|SLC34A1	REV__ENSG00000131183|ENST00000324417|SLC34A1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	419.24013	1254.69856	-0.41991	-0.00017604	-1.6558	-0.00069416	-2.0757	-0.0008702	419.23921274095267	41.718	0.48032	41.718	41.55	42.03	0	-0.0062014	-0.00011884	NaN	0.86438	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63541	+		5466	9080	3660	3688							0.08139910999375388
FWSPGLSWV	9	Unmodified	_FWSPGLSWV_					0	0	0			REV__ENST00000481456.1_1_6:31509365-31509719:-|nuORF	REV__ENST00000481456.1_1_6:31509365-31509719:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2679443359375	2	539.77146	1077.52837	0.58778	0.00031727	1.5194	0.00082012	2.1072	0.0011374	539.7694845691809	77.65	1.346	77.684	77.417	78.763	0.034485					129	46	4	0	0	0	0.20845	1	18593	18593		21.747	0	1	337400	+		5467	12089	3661	3689	7517	7517					-0.0072962472286235425
FWTFDNKTR	9	Unmodified	_FWTFDNKTR_					0	0	0			REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF	REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.8003540039062	2	607.80128	1213.58801	0.25632	0.00015579	0.019222	1.1683E-05	0.27555	0.00016748	607.8012035810387	43.22	1.4124	43.31	43.009	44.422	0.089764					125	50	4	0	0	0	0.33849	1	8432	8432		1.6526	0	1	1240600	+		5468	7916	3662	3690	7518	7518					-0.010243537794849544
FWTTSPRGMEA	11	Unmodified	_FWTTSPRGMEA_					0	0	0			REV__ENST00000487138.5_1_2:95944309-95944534:+|nuORF	REV__ENST00000487138.5_1_2:95944309-95944534:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.7955322265625	2	641.79788	1281.58121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.205	1	49.205	48.705	49.705	0								0	0	0	0.31149	1	10071	10071		10.8	1.4164	1		+		5469	12127	3663	3691	7519	7519					-0.04832034722358003
FWVCLPHF	8	Unmodified	_FWVCLPHF_					0	0	0		ENSG00000040731|ENST00000264463|CDH10	ENSG00000040731|ENST00000264463|CDH10	ENSG00000040731|ENST00000264463|CDH10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2471313476562	2	524.757298	1047.50004	0.18859	9.8966E-05	1.14	0.0005982	1.3286	0.00069717	524.7582792145882	37.572	0.71841	37.657	37.397	38.116	0.084476					45	24	3	0	0	0	0.53257	1	6474	6474		6.3541	1.1234	1	29383			5470	534	3664	3692	7520	7520					-0.021806459038089088
FWVGFVLLW	9	Unmodified	_FWVGFVLLW_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.823486328125	2	583.823495	1165.63244	0.52385	0.00030584	-0.27201	-0.0001588	0.25185	0.00014703	583.8231849949974	74.306	1.0674	74.306	74.053	75.121	0					77	39	3	0	0	0	0.18003	2	17799	17690;17799		20.871	5.6227	1	498480			5471	1620	3665	3693	7521;7522	7522					0.05624702104637436
FWVGFVLLW	9	Unmodified	_FWVGFVLLW_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8231201171875	2	583.823495	1165.63244	0.59389	0.00034673	-1.2226	-0.00071376	-0.62868	-0.00036704	583.8228215163186	73.523	0.45914	73.575	73.42	73.88	0.052574					43	17	3	0	0	0	0.11964	1	17340	17340		28.173	7.7587	1	397970			5472	1620	3665	3693	7523	7523					0.05624702104637436
FWVGFVLLW	9	Unmodified	_FWVGFVLLW_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8236694335938	2	583.823495	1165.63244	0.72199	0.00042151	-0.5365	-0.00031322	0.18549	0.00010829	583.8230697564969	74.293	1.2437	74.341	73.876	75.119	0.048546					83	44	3	0	0	0	0.11964	4	17528	17528;17575;17625;17674		28.173	7.7587	1	506570			5473	1620	3665	3693	7524;7525;7526;7527	7524					0.05624702104637436
FWVGFVLLW	9	Unmodified	_FWVGFVLLW_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	583.823495	1165.63244	0.26062	0.00015215	-1.0654	-0.00062198	-0.80474	-0.00046983	583.8229238944624	73.579	0.49763	73.579	73.422	73.92	0	0.0020859	8.9472E-05	NaN	28.173	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487840			5474	1620	3665	3693							0.05624702104637436
FYADHPFIF	9	Unmodified	_FYADHPFIF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7769165039062	2	578.776742	1155.53893	0.033793	1.9558E-05	0.41166	0.00023826	0.44545	0.00025782	578.7774966730883	72.33	0.40361	72.33	72.202	72.605	0					21	13	2	0	0	0	0.23598	1	17152	17152		15.847	4.2069	1	93575			5475	3392	3666	3694	7528	7528					-0.032616420684462355
FYADHPFIF	9	Unmodified	_FYADHPFIF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7767944335938	2	578.776742	1155.53893	0.2491	0.00014417	0.7908	0.0004577	1.0399	0.00060187	578.7769893558699	72.361	0.35864	72.417	72.207	72.566	0.055939					21	12	2	0	0	0	0.12809	1	16955	16955		26.884	6.43	1	139450			5476	3392	3666	3694	7529	7529					-0.032616420684462355
FYADHPFIFL	10	Unmodified	_FYADHPFIFL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.3189697265625	2	635.318774	1268.623	0.33028	0.00020983	0.18587	0.00011809	0.51615	0.00032792	635.3188066221533	83.047	1.331	83.047	82.823	84.154	0					111	45	5	0	0	0	0.0013653	4	20398	20355;20398;20444;20501		85.272	45.315	1	961210			5477	3392	3667	3695	7530;7531;7532;7533	7531					-0.0005711097155653988
FYADHPFIFL	10	Unmodified	_FYADHPFIFL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.3190307617188	2	635.318774	1268.623	0.25531	0.0001622	0.33283	0.00021145	0.58814	0.00037366	635.3188758914532	83.054	1.2906	83.076	82.851	84.142	0.021744					109	45	4	0	0	0	0.036485	4	20247	20196;20247;20294;20346		61.357	28.011	1	835860			5478	3392	3667	3695	7534;7535;7536;7537	7535					-0.0005711097155653988
FYAELYHII	9	Unmodified	_FYAELYHII_					0	0	0		ENSG00000100911|ENST00000216802|PSME2;ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENSG00000100911|ENST00000216802|PSME2	ENSG00000100911|ENST00000216802|PSME2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.805419921875	2	584.8055	1167.59645	0.27828	0.00016274	-0.32527	-0.00019022	-0.046983	-2.7476E-05	584.8052402915642	73.376	1.7392	73.376	73.115	74.854	0					130	63	4	0	0	0	8.2367E-09	2	17422	17422;17577		161.89	108.32	1	2897700			5479	1222	3668	3696	7538;7539	7538					0.0193520013710895
FYAELYHII	9	Unmodified	_FYAELYHII_					0	0	0		ENSG00000100911|ENST00000216802|PSME2;ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENSG00000100911|ENST00000216802|PSME2	ENSG00000100911|ENST00000216802|PSME2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8062744140625	2	584.8055	1167.59645	0.58337	0.00034116	-0.59992	-0.00035084	-0.016551	-9.6794E-06	584.8050300399375	73.303	1.2792	73.355	73.093	74.373	0.052574					120	48	4	0	0	0	0.0099477	1	17449	17449		67.344	38.857	1	2278600			5480	1222	3668	3696	7540	7540					0.0193520013710895
FYAERFFKF	9	Unmodified	_FYAERFFKF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.88165283203125	3	418.88172	1253.62333	0.71312	0.00029871	-0.69331	-0.00029041	0.019812	8.2989E-06	418.881390272235	64.218	0.79121	64.218	64.078	64.87	0					46	27	2	0	0	0	0.2779	1	14662	14662		9.544	5.3545	1	175550			5481	5069	3669	3697	7541	7541					0.0066630874830480025
FYAERFFKF	9	Unmodified	_FYAERFFKF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.8817138671875	3	418.88172	1253.62333	0.26758	0.00011208	-0.19263	-8.0691E-05	0.074945	3.1393E-05	419.2159953243264	64.164	0.51105	64.235	64.027	64.538	0.071022					39	17	3	0	0	0	0.26705	1	14483	14483		10.8	6.61	1	208550			5482	5069	3669	3697	7542	7542					0.0066630874830480025
FYAHIIPFL	9	Unmodified	_FYAHIIPFL_					0	0	0		nc|ENSG00000131238|P50897-2|PPT1;ENSG00000131238|ENST00000642050|PPT1	nc|ENSG00000131238|P50897-2|PPT1	nc|ENSG00000131238|P50897-2|PPT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.814697265625	2	560.813128	1119.6117	0.59951	0.00033622	0.22657	0.00012706	0.82608	0.00046328	560.813173740633	83.518	0.93549	83.518	83.279	84.215	0					101	31	4	0	0	0	0.0058736	2	20500	20500;20549		79.935	23.886	1	2047700			5483	2521	3670	3698	7543;7544	7543					0.056681117249809176
FYAHIIPFL	9	Unmodified	_FYAHIIPFL_					0	0	0		nc|ENSG00000131238|P50897-2|PPT1;ENSG00000131238|ENST00000642050|PPT1	nc|ENSG00000131238|P50897-2|PPT1	nc|ENSG00000131238|P50897-2|PPT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8132934570312	2	560.813128	1119.6117	0.39061	0.00021906	0.39994	0.00022429	0.79055	0.00044335	560.8132947753772	83.466	1.0178	83.487	83.278	84.295	0.021744					119	36	4	0	0	0	0.0058736	3	20401	20327;20358;20401		79.935	23.886	1	2715300			5484	2521	3670	3698	7545;7546;7547	7547					0.056681117249809176
FYAKSDKIDA	10	Unmodified	_FYAKSDKIDA_					0	0	0			REV__nc|ENSG00000102024|P13797-3|PLS3	REV__nc|ENSG00000102024|P13797-3|PLS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7769165039062	2	579.295496	1156.57644	0.1196	6.9284E-05	-2.822	-0.0016348	-2.7024	-0.0015655	579.2928869932819	71.978	0.82771	71.978	71.701	72.528	0					48	28	3	0	0	0	0.31794	1	17152	17152		3.5965	0.70727	1	112780	+		5485	8443	3671	3699	7548	7548					0.004414044065242706
FYALVQYTL	9	Unmodified	_FYALVQYTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3002319335938	2	559.30005	1116.58555	0.68006	0.00038036	0.23974	0.00013408	0.9198	0.00051444	559.299742515625	83.703	0.69675	83.703	83.485	84.182	0					57	23	3	0	0	0	0.037903	1	20602	20602		66.457	6.3828	1	505080			5486	5516	3672	3700	7549	7549					0.03191797762860915
FYALVQYTL	9	Unmodified	_FYALVQYTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.3002319335938	2	559.30005	1116.58555	0.43767	0.00024479	0.48183	0.00026949	0.9195	0.00051428	559.2999443898891	83.69	0.74583	83.712	83.471	84.217	0.021744					53	26	3	0	0	0	0.0569	2	20453	20453;20464		41.84	14.956	1	434420			5487	5516	3672	3700	7550;7551	7550					0.03191797762860915
FYAPNYLCL	9	Unmodified	_FYAPNYLCL_					0	0	0		ENSG00000283758|ENST00000640449|PMIS2	ENSG00000283758|ENST00000640449|PMIS2	ENSG00000283758|ENST00000640449|PMIS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2650756835938	2	552.265153	1102.51575	0.2157	0.00011913	-0.44724	-0.00024699	-0.23153	-0.00012787	552.2648500744541	22.146	0.27287	22.248	22.091	22.363	0.10178					34	20	2	0	0	0	0.3354	1	1962	1962		2.0598	0.21551	1	28047			5488	5774	3673	3701	7552	7552					-0.031404041774294456
FYATSIFQL	9	Unmodified	_FYATSIFQL_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2844848632812	2	545.2844	1088.55425	0.29075	0.00015854	0.67005	0.00036537	0.9608	0.00052391	545.2845892016343	88.967	0.8277	88.967	88.791	89.618	0					71	31	3	0	0	0	0.0042703	1	22221	22221		99.755	47.487	1	567430			5489	3906	3674	3702	7553	7553					0.013512247287508217
FYATSIFQL	9	Unmodified	_FYATSIFQL_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2845458984375	2	545.2844	1088.55425	0.30032	0.00016376	0.45669	0.00024903	0.75701	0.00041279	545.2845685130458	88.963	0.73717	88.996	88.772	89.509	0.032257					72	28	4	0	0	0	0.0042703	2	22064	22064;22132		99.755	38.398	1	700100			5490	3906	3674	3702	7554;7555	7554					0.013512247287508217
FYAWNFLQ	8	Unmodified	_FYAWNFLQ_					0	0	0		ENST00000557682.6_1_15:93441140-93441287:+|nuORF	ENST00000557682.6_1_15:93441140-93441287:+|nuORF	ENST00000557682.6_1_15:93441140-93441287:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.28515625	2	544.763635	1087.51272	0.24888	0.00013558	-2.4145	-0.0013154	-2.1657	-0.0011798	544.7615108337014	89.236	0.97496	89.236	88.764	89.739	0					64	37	2	0	0	0	0.44023	1	22177	22177		20.871	3.9289	1	147870			5491	7137	3675	3703	7556	7556					-0.027539112399153964
FYAWNFLQ	8	Unmodified	_FYAWNFLQ_					0	0	0		ENST00000557682.6_1_15:93441140-93441287:+|nuORF	ENST00000557682.6_1_15:93441140-93441287:+|nuORF	ENST00000557682.6_1_15:93441140-93441287:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2850952148438	2	544.763635	1087.51272	0.27751	0.00015118	-2.6113	-0.0014226	-2.3338	-0.0012714	544.7614123202264	89.05	0.90108	89.082	88.823	89.724	0.032265					52	34	2	0	0	0	0.38286	1	22011	22011		28.173	8.7342	1	136180			5492	7137	3675	3703	7557	7557					-0.027539112399153964
FYDACPTVI	9	Unmodified	_FYDACPTVI_					0	0	0			REV__MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant	REV__MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7415771484375	2	514.741511	1027.46847	0.064723	3.3316E-05	0.28289	0.00014562	0.34762	0.00017893	514.741604873158	72.988	0.99641	72.988	72.287	73.284	0					62	34	2	0	0	0	0.32112	1	17277	17277		3.9444	1.0552	1	261210	+		5493	10514	3676	3704	7558	7558					-0.04416683448425829
FYDDKVSAL	9	Unmodified	_FYDDKVSAL_					0	0	0		TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.262939453125	2	529.263665	1056.51278	0.20061	0.00010618	-1.0643	-0.00056328	-0.86366	-0.0004571	529.2628998105884	49.801	0.55871	49.801	49.621	50.18	0					45	19	3	0	0	0	0.0085356	2	10265	10265;10312		71.708	33.734	1	457180			5494	2776	3677	3705	7559;7560	7559					-0.013219560305742561
FYDDKVSAL	9	Unmodified	_FYDDKVSAL_					0	0	0		TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7509765625	2	529.263665	1056.51278	0.17399	9.2089E-05	-3.3133	-0.0017536	-3.1393	-0.0016615	529.766722397566	51.601	0.86655	51.601	51.295	52.162	0					79	29	4	0	0	0	0.23216	1	10901	10901		14.838	0.93222	1	356340			5495	2776	3677	3705	7561	7561					-0.013219560305742561
FYDDKVSAL	9	Unmodified	_FYDDKVSAL_					0	0	0		TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2630004882812	2	529.263665	1056.51278	0.22923	0.00012132	-1.2258	-0.00064877	-0.99656	-0.00052744	529.2628860383186	49.765	0.52992	49.838	49.622	50.152	0.07312					43	18	3	0	0	0	0.0085356	1	10119	10119		71.708	26.008	1	393590			5496	2776	3677	3705	7562	7562					-0.013219560305742561
FYDPLVLQL	9	Unmodified	_FYDPLVLQL_					0	0	0			REV__ENSG00000178695|ENST00000377474|KCTD12	REV__ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3080444335938	2	554.307875	1106.6012	0.49676	0.00027536	-0.067412	-3.7367E-05	0.42935	0.00023799	554.3077559095292	94.67	1.168	94.67	94.271	95.439	0					155	49	4	0	0	0	0.01063	2	23864	23864;23910		65.235	0	1	2283400	+		5497	10458	3678	3706	7563;7564	7563					0.0521608427989122
FYEDYFSI	8	Unmodified	_FYEDYFSI_					0	0	0		ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1	ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7577514648438	2	542.237116	1082.45968	0.69469	0.00037669	0.32309	0.00017519	1.0178	0.00055188	542.237286108163	66.288	0.33044	66.355	66.229	66.56	0.066872					22	11	3	0	0	0	0.3528	1	15172	15172		18.135	2.2878	1	160290			5498	3998	3679	3707	7565	7565					-0.07825333813229918
FYEPHKPW	8	Unmodified	_FYEPHKPW_					0	0	0			REV__ENST00000473371.1_1_13:39613176-39613868:+|nuORF	REV__ENST00000473371.1_1_13:39613176-39613868:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7705078125	2	552.269084	1102.52362	0.23428	0.00012939	-0.95496	-0.00052739	-0.72067	-0.000398	552.2685111675878	21.546	0.19814	21.648	21.542	21.74	0.10178					24	19	2	0	0	0	0.54097	1	1800	1800		0.69038	0	1	10876	+		5499	10778	3680	3708	7566	7566					-0.023545088656419466
FYEWESSI	8	Unmodified	_FYEWESSI_					0	0	0		ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7359619140625	2	530.73474	1059.45493	0.21478	0.00011399	1.0479	0.00055616	1.2627	0.00067015	530.7353937218656	50.123	0.61324	50.123	49.822	50.435	0					47	21	3	0	0	0	0.53817	1	10321	10321		2.5775	0	1	112060			5500	1758	3681	3709	7567	7567					-0.07242217955990782
FYFFADKQN	9	Unmodified	_FYFFADKQN_					0	0	0		tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2766723632812	2	590.277106	1178.53966	0.17966	0.00010605	-0.27591	-0.00016286	-0.096246	-5.6812E-05	590.2768675828618	35.049	0.67289	35.049	34.776	35.449	0					39	23	2	0	0	0	0.34646	1	5857	5857		0.6015	0.076735	1	37106			5501	13655	3682	3710	7568	7568					-0.042468474193810835
FYFFFFFF	8	Unmodified	_FYFFFFFF_					0	0	0		ENST00000538582.5_1_12:21590984-21591200:+|nuORF	ENST00000538582.5_1_12:21590984-21591200:+|nuORF	ENST00000538582.5_1_12:21590984-21591200:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.52569580078125	3	404.524873	1210.55279	0.74258	0.00030039	0.931	0.00037661	1.6736	0.00067701	404.52528328371864	98.714	0.52969	98.714	98.448	98.978	0					49	30	2	0	0	0	0.51202	1	25123	25123		7.9102	0.80843	1	201810			5502	7053	3683	3711	7569	7569					-0.04406364569354082
FYFYFFLG	8	Unmodified	_FYFYFFLG_					0	0	0		ENSG00000181803|ENST00000320704|OR6S1	ENSG00000181803|ENST00000320704|OR6S1	ENSG00000181803|ENST00000320704|OR6S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2650146484375	2	552.265479	1102.51641	-0.15694	-8.6671E-05	-0.48586	-0.00026832	-0.64279	-0.00035499	552.2651861365774	22.271	0.31366	22.271	22.188	22.502	0					35	22	2	0	0	0	0.54081	1	2083	2083		0.79363	0	1	16096			5503	4846	3684	3712	7570	7570					-0.030752414660582872
FYGDKMNLF	9	Oxidation (M)	_FYGDKM(Oxidation (M))NLF_		FYGDKM(1)NLF		FYGDKM(44)NLF	0	0	1		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7652587890625	2	575.765517	1149.51648	0.40888	0.00023542	-0.66359	-0.00038207	-0.25471	-0.00014665	575.7652275945003	57.647	0.83891	57.647	57.378	58.217	0					57	29	2	0	0	0	0.11174	1	12654	12654		43.772	19.099	1	253410			5504	2068	3685	3713	7571	7571		128			-0.05229609528373658
FYGDKMNLF	9	Oxidation (M)	_FYGDKM(Oxidation (M))NLF_		FYGDKM(1)NLF		FYGDKM(42)NLF	0	0	1		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.765380859375	2	575.765517	1149.51648	0.33223	0.00019129	-0.78021	-0.00044922	-0.44799	-0.00025794	575.7653501416579	57.604	0.81355	57.673	57.32	58.134	0.068375					58	31	2	0	0	0	0.0569	1	12472	12472		41.84	17.166	1	246220			5505	2068	3685	3713	7572	7572		128			-0.05229609528373658
FYGGVILVL	9	Unmodified	_FYGGVILVL_					0	0	0			REV__ENST00000495998.1_1_7:128846153-128848718:+|nuORF	REV__ENST00000495998.1_1_7:128846153-128848718:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7924499511719	2	490.794404	979.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.366	1	73.418	72.918	73.918	0.052574								0	0	0	0.22377	1	17279	17279		14.582	3.7578	1		+		5506	9020	3686	3714	7573	7573					0.08365020459370953
FYGRKRVRW	9	Unmodified	_FYGRKRVRW_					0	0	0			REV__nc|ENSG00000145864|P47870-4|GABRB2	REV__nc|ENSG00000145864|P47870-4|GABRB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.544921875	3	423.243874	1266.70979	0.59654	0.00025248	3.5166	0.0014884	4.1132	0.0017409	423.2450047368379	57.38	0.76362	57.38	57.065	57.829	0					35	26	2	0	0	0	0.25952	1	12487	12487		1.1933	0	1	84338	+		5507	9527	3687	3715	7574	7574					0.08710733093539602
FYGTFDVHL	9	Unmodified	_FYGTFDVHL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7666015625	2	549.766374	1097.5182	0.54365	0.00029888	0.048162	2.6478E-05	0.59181	0.00032536	549.7662620420717	68.835	0.4906	68.835	68.641	69.132	0					52	18	4	0	0	0	0.00087032	3	16059	16016;16059;16104		125.62	102.48	1	466090			5508	1040	3688	3716	7575;7576;7577	7576					-0.026662324480867028
FYGTFDVHL	9	Unmodified	_FYGTFDVHL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7664794921875	2	549.766374	1097.5182	0.39138	0.00021517	0.12741	7.0048E-05	0.51879	0.00028522	549.7663860585474	68.716	0.49471	68.778	68.613	69.108	0.062126					47	18	4	0	0	0	0.0037915	3	15897	15852;15897;15948		104.8	81.651	1	565390			5509	1040	3688	3716	7578;7579;7580	7579					-0.026662324480867028
FYGTVLAKRI	10	Unmodified	_FYGTVLAKRI_					0	0	0			REV__ENST00000508368.1_1_4:24529637-24534570:-|nuORF	REV__ENST00000508368.1_1_4:24529637-24534570:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.7966918945312	2	584.347866	1166.68118	0.64446	0.00037659	3.5377	0.0020672	4.1821	0.0024438	584.3495497854635	88.813	0.22948	88.846	88.729	88.959	0.032257					14	8	2	0	0	0	0.31585	1	21992	21992		10.824	2.6684	1	82286	+		5510	8645	3689	3717	7581	7581					0.10450570673742732
FYGTVLAKRI	10	Unmodified	_FYGTVLAKRI_					0	0	0			REV__ENST00000508368.1_1_4:24529637-24534570:-|nuORF	REV__ENST00000508368.1_1_4:24529637-24534570:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	584.347866	1166.68118	0.51263	0.00029956	3.0455	0.0017796	3.5581	0.0020792	584.3493372458394	88.867	0.28131	88.867	88.701	88.982	0	0.010474	-0.00019362	NaN	10.824	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107290	+		5511	8645	3689	3717							0.10450570673742732
FYGVFTSQW	9	Unmodified	_FYGVFTSQW_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENST00000558975.1_1_15:90764883-90766973:+|nuORF	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7661743164062	2	567.766374	1133.5182	0.49107	0.00027881	-0.69406	-0.00039406	-0.20299	-0.00011525	567.7657373271172	82.385	1.1087	82.385	82.092	83.2	0					86	38	4	0	0	0	0.0011398	1	20203	20203		96.285	31.05	1	520490			5512	5006	3690	3718	7582	7582					-0.0432223244808938
FYHDRFKVF	9	Unmodified	_FYHDRFKVF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.21697998046875	3	420.217102	1257.62948	0.22473	9.4437E-05	-0.57902	-0.00024331	-0.35428	-0.00014888	420.21677688918805	46.184	0.61199	46.184	45.927	46.539	0					53	22	3	0	0	0	0.20337	1	9152	9152		26.021	17.576	1	249500			5513	1204	3691	3719	7583	7583					0.010968269798240726
FYHDRFKVF	9	Unmodified	_FYHDRFKVF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.555419921875	3	420.217102	1257.62948	0.49908	0.00020972	-0.6581	-0.00027654	-0.15901	-6.6821E-05	420.2167634973355	46.76	0.88401	46.76	46.699	47.583	0					54	32	2	0	0	0	0.25458	1	9324	9324		5.7319	0	1	97121			5514	1204	3691	3719	7584	7584					0.010968269798240726
FYHDRFKVF	9	Unmodified	_FYHDRFKVF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.2170104980469	3	420.217102	1257.62948	-0.093482	-3.9283E-05	-0.094251	-3.9606E-05	-0.18773	-7.8889E-05	420.21700880073763	45.957	1.0235	46.042	45.503	46.527	0.085617					107	39	4	0	0	0	0.034744	2	8978	8935;8978		47.732	35.557	1	470670			5515	1204	3691	3719	7585;7586	7586					0.010968269798240726
FYHKVNFSP	9	Unmodified	_FYHKVNFSP_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.787109375	2	569.787641	1137.56073	0.28195	0.00016065	-1.7402	-0.00099156	-1.4583	-0.0008309	569.7867767843801	55.809	0.64296	55.874	55.517	56.16	0.065128					57	23	4	0	0	0	0.31496	1	11987	11987		4.756	0	1	439020			5516	2650	3692	3720	7587	7587					-0.0025483731988060754
FYHKVNFSP	9	Unmodified	_FYHKVNFSP_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	569.787641	1137.56073	0.35487	0.0002022	-1.4174	-0.00080762	-1.0625	-0.00060542	569.7866308263947	55.864	0.48193	55.864	55.635	56.116	0	-0.0048047	9.9799E-05	NaN	4.756	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475190			5517	2650	3692	3720							-0.0025483731988060754
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENST00000528159.1_1_11:44228449-44265767:+|nuORF;ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENST00000528159.1_1_11:44228449-44265767:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.816650390625	2	647.816399	1293.61824	0.36254	0.00023486	0.080496	5.2146E-05	0.44304	0.00028701	647.8163927110445	53.46	2.2333	53.46	53.234	55.467	0					159	89	3	0	0	0	0.0043591	9	11366	11328;11366;11416;11463;11520;11600;11655;11826;11967		108	108	1	1567200			5518	3455	3693	3721	7588;7589;7590;7591;7592;7593;7594;7595;7596	7589					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENST00000528159.1_1_11:44228449-44265767:+|nuORF;ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENST00000528159.1_1_11:44228449-44265767:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.2130126953125	3	432.213358	1293.61824	0.52353	0.00022628	-0.17686	-7.6441E-05	0.34667	0.00014984	432.2133284391246	53.457	2.7012	53.457	51.886	54.587	0					283	104	6	0	0	0	0.083124	5	11505	11373;11415;11455;11505;11549		36.127	19.561	1	8250100			5519	3455	3693	3721	7597;7598;7599;7600;7601	7600					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENST00000528159.1_1_11:44228449-44265767:+|nuORF;ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENST00000528159.1_1_11:44228449-44265767:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.8165893554688	2	647.816399	1293.61824	0.3011	0.00019506	0.079846	5.1726E-05	0.38095	0.00024678	647.8164514837451	53.4	1.2065	53.466	53.242	54.448	0.06543					135	51	3	0	0	0	0.0034419	7	11215	11172;11215;11257;11301;11350;11404;11498		120.45	98.704	1	1765700			5520	3455	3693	3721	7602;7603;7604;7605;7606;7607;7608	7603					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENST00000528159.1_1_11:44228449-44265767:+|nuORF;ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENST00000528159.1_1_11:44228449-44265767:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.21356201171875	3	432.213358	1293.61824	0.28585	0.00012355	-0.11796	-5.0983E-05	0.16789	7.2563E-05	432.2134546376716	53.396	2.1422	53.462	52.491	54.633	0.06543					289	96	5	0	0	0	0.03472	5	11249	11210;11249;11287;11332;11385		47.749	24.974	1	10918000			5521	3455	3693	3721	7609;7610;7611;7612;7613	7610					-0.016819951142906575
FYHNIVNPGC	10	Unmodified	_FYHNIVNPGC_					0	0	0			REV__ENSG00000172208|ENST00000624868|OR4X2	REV__ENSG00000172208|ENST00000624868|OR4X2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.770263671875	2	582.268758	1162.52296	0.67388	0.00039238	-0.58719	-0.0003419	0.086691	5.0477E-05	582.7696844640982	53.395	1.0726	53.461	53.242	54.315	0.06543					91	46	3	0	0	0	0.19659	1	11189	11189		34.102	8.7031	1	265380	+		5522	10282	3694	3722	7614	7614					-0.05179671576979672
FYHPIYWL	8	Unmodified	_FYHPIYWL_					0	0	0			REV__ENSG00000184350|ENST00000389832|MRGPRE	REV__ENSG00000184350|ENST00000389832|MRGPRE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.751220703125	2	569.789653	1137.56475	0.48704	0.00027751	0.033781	1.9248E-05	0.52082	0.00029676	569.7897040508354	70.38	0.74205	70.38	70.17	70.912	0					46	27	3	0	0	0	0.3576	1	16660	16660		6.3541	0	1	229510	+		5523	10632	3695	3723	7615	7615					0.001472521738605792
FYHTPGSV	8	Unmodified	_FYHTPGSV_					0	0	0		ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2316589355469	2	454.21906	906.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.392	1	24.392	23.892	24.892	0								0	0	0	0.38822	1	2671	2671		5.7604	0.52976	1				5524	3284	3696	3724	7616	7616					-0.033387461994152545
FYIESISFL	9	Unmodified	_FYIESISFL_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENST00000470070.6_1_3:69247847-69370051:-|nuORF	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7921142578125	2	559.792058	1117.56956	0.35396	0.00019815	-0.23057	-0.00012907	0.1234	6.9076E-05	559.7916355194446	95.145	1.0898	95.145	94.938	96.028	0					104	52	4	0	0	0	0.0017019	3	24099	24058;24099;24144		117.6	50.255	1	1288100			5525	1846	3697	3725	7617;7618;7619	7618					0.01548091525955897
FYIESISFL	9	Unmodified	_FYIESISFL_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENST00000470070.6_1_3:69247847-69370051:-|nuORF	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7921142578125	2	559.792058	1117.56956	0.35798	0.00020039	-0.27546	-0.0001542	0.082516	4.6192E-05	559.7917169038176	95.143	1.0135	95.182	94.911	95.924	0.038872					100	45	4	0	0	0	0.00087032	2	23895	23895;23942		125.62	40.268	1	1374900			5526	1846	3697	3725	7620;7621	7620					0.01548091525955897
FYIESISYL	9	Unmodified	_FYIESISYL_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;ENST00000342409.3_1_10:13735712-14050160:-|nuORF	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.33056640625	2	567.789515	1133.56448	0.35946	0.0002041	0.85511	0.00048552	1.2146	0.00068962	567.7901751118475	85.725	0.27079	85.725	85.579	85.849	0					23	11	3	0	0	0	0.21603	1	21213	21213		20.454	5.6154	1	71381			5527	3462	3698	3726	7622	7622					0.0030378766334706597
FYIKQKGY	8	Unmodified	_FYIKQKGY_					0	0	0			REV__ENST00000587268.1_1_17:40729200-40729610:-|nuORF	REV__ENST00000587268.1_1_17:40729200-40729610:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.270263671875	2	523.78711	1045.55967	0.51461	0.00026955	0.10243	5.365E-05	0.61704	0.0003232	523.7870835946958	70.307	0.27702	70.307	70.114	70.391	0					12	10	2	0	0	0	0.35759	1	16525	16525		13.508	1.8676	1	74596	+		5528	9087	3699	3727	7623	7623					0.038709483112370435
FYIKSSGLDLI	11	Unmodified	_FYIKSSGLDLI_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.2363586425781	3	419.23594	1254.68599	0.70095	0.00029386	0.17156	7.1924E-05	0.87251	0.00036579	419.2359677977245	64.087	0.74371	64.087	63.92	64.664	0					51	25	4	0	0	0	0.37201	1	14613	14613		9.7643	1.6087	1	232040	+		5529	10737	3700	3728	7624	7624					0.06883410025875492
FYIKSSGLDLI	11	Unmodified	_FYIKSSGLDLI_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.2366638183594	3	419.23594	1254.68599	0.26648	0.00011172	0.78631	0.00032965	1.0528	0.00044137	419.2362655210072	64.048	0.77581	64.119	63.859	64.634	0.071022					56	27	4	0	0	0	0.34507	1	14469	14469		12.856	0.61529	1	218860	+		5530	10737	3700	3728	7625	7625					0.06883410025875492
FYILIGGLGL	10	Unmodified	_FYILIGGLGL_					0	0	0		nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1	nc|ENSG00000155511|P42261-3|GRIA1	nc|ENSG00000155511|P42261-3|GRIA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8231201171875	2	533.320786	1064.62702	0.45787	0.00024419	-0.35008	-0.00018671	0.10778	5.7483E-05	533.3205887300971	106.65	0.39749	106.67	106.5	106.9	0.025711					96	39	3	0	0	0	0.34148	1	27275	27275		18.135	1.1927	1	352710			5531	3589	3701	3729	7626	7626					0.09728978522184661
FYILSPLNL	9	Unmodified	_FYILSPLNL_					0	0	0		ENST00000466367.5_1_9:140500199-140508236:+|nuORF;ENST00000491911.5_1_9:140507208-140508236:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000466367.5_1_9:140500199-140508236:+|nuORF	ENST00000466367.5_1_9:140500199-140508236:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3104858398438	2	540.310418	1078.60628	0.53906	0.00029126	-0.33392	-0.00018042	0.20514	0.00011084	540.3099311333043	97.147	0.50349	97.147	96.908	97.412	0					48	24	3	0	0	0	0.20358	1	24648	24648		18.146	4.2403	1	179200			5532	5269	3702	3730	7627	7627					0.07012388142516102
FYILSPLNL	9	Unmodified	_FYILSPLNL_					0	0	0		ENST00000466367.5_1_9:140500199-140508236:+|nuORF;ENST00000491911.5_1_9:140507208-140508236:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000466367.5_1_9:140500199-140508236:+|nuORF	ENST00000466367.5_1_9:140500199-140508236:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	540.310418	1078.60628	0.66285	0.00035815	-0.69517	-0.00037561	-0.032321	-1.7463E-05	540.3099434420467	97.135	0.48984	97.176	96.965	97.455	0.040855	0.014716	-0.00024275	NaN	18.146	36	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131480			5533	5269	3702	3730							0.07012388142516102
FYILTSKEL	9	Unmodified	_FYILTSKEL_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2675170898438	2	557.313158	1112.61176	0.52634	0.00029333	-1.3047	-0.00072712	-0.77835	-0.00043379	557.3121159490331	62.467	0.23892	62.467	62.421	62.66	0					10	8	2	0	0	0	0.18151	1	14118	14118		29.841	5.1667	1	84175			5534	905	3703	3731	7628	7628					0.05996066934335431
FYINGQNQI	9	Unmodified	_FYINGQNQI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2852783203125	2	548.774731	1095.53491	0.021551	1.1827E-05	-0.70299	-0.00038578	-0.68144	-0.00037395	548.7746864407195	58.959	0.45727	58.959	58.762	59.219	0					21	16	2	0	0	0	0.0099477	1	13022	13022		67.344	48.087	1	210280			5535	2883	3704	3732	7629	7629					-0.009037315621299058
FYINGQNQI	9	Unmodified	_FYINGQNQI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2855834960938	2	548.774731	1095.53491	0.27295	0.00014979	-0.8858	-0.0004861	-0.61285	-0.00033632	548.7745452817297	58.886	0.60781	58.956	58.721	59.328	0.070477					30	23	2	0	0	0	0.0099477	1	12862	12862		67.344	45.807	1	171130			5536	2883	3704	3732	7630	7630					-0.009037315621299058
FYINSGTLQF	10	Unmodified	_FYINSGTLQF_					0	0	0		ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1	ENST00000587027.1_1_16:4909049-4918847:+|nuORF	ENST00000587027.1_1_16:4909049-4918847:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2982177734375	2	595.298039	1188.58152	0.75062	0.00044685	0.12207	7.2668E-05	0.87269	0.00051951	595.2979656276409	80.552	0.94946	80.552	80.286	81.235	0					88	32	5	0	0	0	7.9948E-06	4	19603	19603;19653;19711;19740		135.86	92.005	1	1084200			5537	2051	3705	3733	7631;7632;7633;7634	7631					-0.00522291730840152
FYINSGTLQF	10	Unmodified	_FYINSGTLQF_					0	0	0		ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1	ENST00000587027.1_1_16:4909049-4918847:+|nuORF	ENST00000587027.1_1_16:4909049-4918847:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.297607421875	2	595.298039	1188.58152	0.54858	0.00032657	0.11297	6.7252E-05	0.66155	0.00039382	595.2979578959496	80.548	0.61983	80.572	80.353	80.973	0.023605					65	21	4	0	0	0	2.7127E-07	3	19444	19444;19492;19538		147.24	103.38	1	1331000			5538	2051	3705	3733	7635;7636;7637	7635					-0.00522291730840152
FYINTGTLQF	10	Unmodified	_FYINTGTLQF_					0	0	0		UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant;nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2	UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant	UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3053588867188	2	602.305864	1202.59717	0.67199	0.00040474	-1.5116	-0.00091045	-0.83961	-0.0005057	602.3053080565046	83.447	1.5636	83.447	82.651	84.215	0					159	53	5	0	0	0	4.5636E-05	2	20497	20497;20552		114.5	83.228	1	1695500			5539	3664	3706	3734	7638;7639	7638					0.0039799478618078865
FYINTGTLQF	10	Unmodified	_FYINTGTLQF_					0	0	0		UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant;nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2	UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant	UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3057250976562	2	602.305864	1202.59717	0.45355	0.00027317	-1.1684	-0.00070372	-0.71483	-0.00043055	602.3055576931299	83.42	1.4036	83.441	82.764	84.168	0.021744					161	49	5	0	0	0	4.5636E-05	3	20325	20325;20376;20420		114.5	83.228	1	1761800			5540	3664	3706	3734	7640;7641;7642	7640					0.0039799478618078865
FYIPPLATHTI	11	Unmodified	_FYIPPLATHTI_					0	0	0		ENST00000469535.5_1_1:207925470-207933074:+|nuORF;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-6|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-13|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.8521118164062	2	636.852981	1271.69141	0.15181	9.6683E-05	-0.1696	-0.00010801	-0.017788	-1.1328E-05	636.8527197578268	71.72	0.33138	71.72	71.502	71.834	0					19	11	2	0	0	0	0.21662	1	16919	16919		27.629	10.516	1	120710			5541	1995	3707	3735	7643	7643					0.06643133608326934
FYIPSTILL	9	Unmodified	_FYIPSTILL_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.8131103515625	2	533.812793	1065.61103	0.29989	0.00016009	0.32301	0.00017243	0.62291	0.00033251	533.8128831178591	95.609	0.5962	95.609	95.491	96.087	0					68	31	3	0	0	0	0.030375	3	24242	24197;24242;24289		50.855	27.707	1	560600			5542	794	3708	3736	7644;7645;7646	7645					0.08085272285279643
FYIPSTILL	9	Unmodified	_FYIPSTILL_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8135375976562	2	533.812793	1065.61103	0.44669	0.00023845	0.071544	3.8191E-05	0.51824	0.00027664	533.8128282277904	95.598	1.0832	95.637	95.115	96.198	0.038864					81	50	3	0	0	0	0.021119	3	24073	24028;24073;24118		57.471	28.985	1	426720			5543	794	3708	3736	7647;7648;7649	7648					0.08085272285279643
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant;nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant	AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.8082275390625	2	540.808042	1079.60153	-0.03818	-2.0648E-05	0.96167	0.00052008	0.92349	0.00049943	540.8083395711574	58.524	0.42968	58.524	58.416	58.846	0					33	14	3	0	0	0	0.02293	2	12918	12918;12988		56.177	36.92	1	305770			5544	79	3709	3737	7650;7651	7650					0.06491503999745873
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant;nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant	AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.8080444335938	2	540.808042	1079.60153	0.32058	0.00017337	0.63801	0.00034504	0.95859	0.00051841	540.8083216389206	58.434	0.59681	58.505	58.348	58.945	0.070477					39	20	3	0	0	0	0.083124	1	12766	12766		36.127	22.221	1	234020			5545	79	3709	3737	7652	7652					0.06491503999745873
FYISQLAYW	9	Unmodified	_FYISQLAYW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.7971801757812	2	595.797675	1189.5808	0.32996	0.00019659	-0.1852	-0.00011034	0.14476	8.6248E-05	595.797550578091	91.44	0.39261	91.44	91.209	91.602	0					24	14	2	0	0	0	0.2125	1	22949	22949		17.113	0.1706	1	130670			5546	709	3710	3738	7653	7653					-0.006410863799146682
FYISQLAYW	9	Unmodified	_FYISQLAYW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.7984619140625	2	595.797675	1189.5808	0.058168	3.4657E-05	0.79879	0.00047592	0.85696	0.00051058	595.7979464228605	91.383	0.57583	91.418	91.169	91.745	0.035446					38	20	3	0	0	0	0.13341	1	22765	22765		26.268	9.3258	1	103820			5547	709	3710	3738	7654	7654					-0.006410863799146682
FYITGIFQI	9	Unmodified	_FYITGIFQI_					0	0	0		ENSG00000109099|ENST00000312280|PMP22;ENST00000494511.5_1_17:15134236-15168564:-|nuORF	ENSG00000109099|ENST00000312280|PMP22	ENSG00000109099|ENST00000312280|PMP22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3028564453125	2	551.302593	1100.59063	0.71413	0.0003937	4.1861	0.0023078	4.9002	0.0027015	551.8048811390871	97.984	0.48773	98.024	97.781	98.269	0.040855					74	23	4	0	0	0	0.26684	1	24816	24816		10.824	0	1	225110			5548	1622	3711	3739	7655	7655					0.04436101625469746
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7984008789062	2	581.798206	1161.58186	0.64288	0.00037403	3.2365	0.001883	3.8794	0.002257	581.7982154707277	53.93	0.71249	53.93	53.739	54.451	0					53	25	4	0	0	0	0.17428	1	11530	11530		21.537	4.4241	1	195250			5549	5273	3712	3740	7656	7656					0.007531279889917641
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7988891601562	2	581.798206	1161.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.855	1	53.92	53.42	54.42	0.065304								0	0	0	0.066177	1	11351	11351		43.772	21.036	1				5550	5273	3712	3740	7657	7657					0.007531279889917641
FYIWRPLRI	9	Unmodified	_FYIWRPLRI_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.9166564941406	3	421.916876	1262.7288	0.84213	0.00035531	-0.87057	-0.00036731	-0.028438	-1.1998E-05	421.91644517512157	66.835	0.90652	66.835	66.654	67.561	0					73	34	3	0	0	0	0.26705	3	15483	15432;15483;15549		10.8	7.2068	1	341690			5551	7459	3713	3741	7658;7659;7660	7659					0.1079426966457504
FYIWRPLRI	9	Unmodified	_FYIWRPLRI_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.9168701171875	3	421.916876	1262.7288	0.53098	0.00022403	-0.66021	-0.00027855	-0.12923	-5.4523E-05	421.916519735546	66.882	0.95036	66.947	66.686	67.636	0.065071					64	33	3	0	0	0	0.22861	3	15289	15289;15338;15398		15.248	11.656	1	433150			5552	7459	3713	3741	7661;7662;7663	7661					0.1079426966457504
FYIYFITF	8	Unmodified	_FYIYFITF_					0	0	0		nc|ENSG00000274150|A8MWK0|FADS2B	nc|ENSG00000274150|A8MWK0|FADS2B	nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2675170898438	2	557.286411	1112.55827	0.52571	0.00029297	4.2016	0.0023415	4.7274	0.0026345	557.2883875000749	62.454	0.35118	62.454	62.341	62.693	0					19	12	2	0	0	0	0.34473	1	14118	14118		22.453	10.812	1	90519			5553	7625	3714	3742	7664	7664					0.006493142224599069
FYIYNTEAH	9	Unmodified	_FYIYNTEAH_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3001098632812	2	579.266739	1156.51892	0.54872	0.00031785	1.3989	0.00081032	1.9476	0.0011282	579.2675316246957	79.467	0.55165	79.467	79.13	79.682	0					35	18	2	0	0	0	0.24263	1	19265	19265		12.532	2.3482	1	239180	+		5554	10155	3715	3743	7665	7665					-0.05307437799046966
FYIYNTEAH	9	Unmodified	_FYIYNTEAH_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	579.266739	1156.51892	0.35935	0.00020816	1.425	0.00082546	1.7844	0.0010336	579.2673147199749	79.35	0.57974	79.377	79.162	79.742	0.026428	-0.045218	1.4679E-05	NaN	12.532	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232340	+		5555	10155	3715	3743							-0.05307437799046966
FYKDPQGEI	9	Unmodified	_FYKDPQGEI_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7608032226562	2	548.769114	1095.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.684	1	55.749	55.249	56.249	0.065128								0	0	0	0.25692	1	11909	11909		7.9102	0	1				5556	3299	3716	3744	7666	7666					-0.02026553656287433
FYKKEKERIL	10	Unmodified	_FYKKEKERIL_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.9327087402344	3	451.934484	1352.78162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.424	1	95.462	94.962	95.962	0.038872								0	0	0	0.33855	1	23996	23996		1.9064	0.45126	1		+		5557	9735	3717	3745	7667	7667					0.1193418293673858
FYKRKLIIIK	10	Unmodified	_FYKRKLIIIK_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2974853515625	3	441.295464	1320.86456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.272	1	67.272	66.772	67.772	0								0	0	0	0.34006	1	15579	15579		0.13989	0.04505	1		+		5558	9906	3718	3746	7668	7668					0.21696544455426192
FYLDQVALSW	10	Unmodified	_FYLDQVALSW_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.816162109375	2	621.313689	1240.61282	0.059214	3.679E-05	0.038048	2.364E-05	0.097262	6.043E-05	621.3138521358136	94.227	0.48785	94.227	94.039	94.527	0					67	22	4	0	0	0	0.086038	2	23773	23773;23822		47.732	17.891	1	244300			5559	3090	3719	3747	7669;7670	7669					0.002142813032378399
FYLDQVALSW	10	Unmodified	_FYLDQVALSW_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3138427734375	2	621.313689	1240.61282	0.11576	7.1924E-05	-0.9067	-0.00056334	-0.79094	-0.00049142	621.3134944370919	94.226	0.46536	94.265	94.079	94.544	0.038086					43	14	4	0	0	0	0.13912	2	23612	23612;23661		40.725	15.849	1	255320			5560	3090	3719	3747	7671;7672	7671					0.002142813032378399
FYLEFKPLL	9	Unmodified	_FYLEFKPLL_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8132934570312	2	585.333893	1168.65323	0.85822	0.00050234	-1.3497	-0.00079002	-0.49147	-0.00028767	585.3333796193227	82.129	0.3816	82.129	81.954	82.336	0					24	13	3	0	0	0	0.12752	1	20140	20140		39.95	19.496	1	133240			5561	200;3052	3720	3748	7673	7673					0.07565247693673882
FYLEFKPLL	9	Unmodified	_FYLEFKPLL_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.813232421875	2	585.333893	1168.65323	0.68801	0.00040272	-1.7282	-0.0010116	-1.0402	-0.00060887	585.8341083149737	82.155	0.40602	82.177	81.992	82.398	0.021866					25	14	2	0	0	0	0.11174	1	19970	19970		43.772	18.373	1	159310			5562	200;3052	3720	3748	7674	7674					0.07565247693673882
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7952270507812	2	597.795132	1193.57571	0.34062	0.00020362	-0.13516	-8.0799E-05	0.20546	0.00012282	597.7950238809824	67.851	1.5959	67.851	67.536	69.132	0					270	59	7	0	0	0	1.677E-07	8	15706	15706;15746;15787;15834;15879;15931;15976;16035		151.48	99.85	1	8194500			5563	2965	3721	3749	7675;7676;7677;7678;7679;7680;7681;7682	7675					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7959594726562	2	597.795132	1193.57571	0.4595	0.00027469	-0.76638	-0.00045814	-0.30688	-0.00018345	597.7944187839777	69.179	1.0601	69.179	68.983	70.043	0					59	36	2	0	0	0	0.20229	1	16413	16413		33.445	20.913	1	237830			5564	2965	3721	3749	7683	7683					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7949829101562	2	597.795132	1193.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.247	1	70.247	69.747	70.747	0								0	0	0	0.16487	1	16481	16481		34.932	22.401	1				5565	2965	3721	3749	7684	7684					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7953491210938	2	597.795132	1193.57571	0.44497	0.000266	-0.28202	-0.00016859	0.16295	9.7412E-05	597.7949268623279	67.731	1.5924	67.795	67.551	69.143	0.063507					164	58	4	0	0	0	1.677E-07	4	15585	15585;15631;15682;15684		151.48	99.85	1	7181400			5566	2965	3721	3749	7685;7686;7687;7688	7685					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.795166015625	2	597.795132	1193.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.937	1	69.997	69.497	70.497	0.060562								0	0	0	0.24994	1	16233	16233		23.79	11.258	1				5567	2965	3721	3749	7689	7689					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7940063476562	2	597.795132	1193.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.979	1	70.039	69.539	70.539	0.060562								0	0	0	0.20092	1	16246	16246		29.841	16.798	1				5568	2965	3721	3749	7690	7690					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7947387695312	2	597.795132	1193.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.166	1	70.226	69.726	70.726	0.060562								0	0	0	0.18313	1	16303	16303		32.037	19.506	1				5569	2965	3721	3749	7691	7691					-0.013333902425074484
FYLFDLKAF	9	Unmodified	_FYLFDLKAF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.787353515625	2	582.310418	1162.60628	0.49816	0.00029008	-0.5147	-0.00029972	-0.016545	-9.6346E-06	582.3097651409261	87.514	0.25838	87.514	87.374	87.633	0					22	9	3	0	0	0	0.18759	1	21741	21741		27.629	9.4938	1	150930			5570	4573	3722	3750	7692	7692					0.03148388142494696
FYLFDLKAF	9	Unmodified	_FYLFDLKAF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.28857421875	2	582.310418	1162.60628	0.46076	0.0002683	-1.0299	-0.00059973	-0.56915	-0.00033142	582.3096725254507	87.378	0.24941	87.406	87.33	87.58	0.027573					20	9	3	0	0	0	0.18759	1	21547	21547		27.629	4.8925	1	136210			5571	4573	3722	3750	7693	7693					0.03148388142494696
FYLGEHMDQ	9	Unmodified	_FYLGEHMDQ_					0	0	0			REV__nc|ENSG00000107242|O14986-3|PIP5K1B	REV__nc|ENSG00000107242|O14986-3|PIP5K1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7894287109375	2	570.244949	1138.47534	0.49338	0.00028135	-2.431	-0.0013863	-1.9376	-0.0011049	570.2429553491094	70.338	0.25094	70.338	70.196	70.447	0					13	9	2	0	0	0	0.25504	1	16534	16534		4.756	0	1	77191	+		5572	8589	3723	3751	7694	7694					-0.08835370567840073
FYLIETLF	8	Unmodified	_FYLIETLF_					0	0	0			REV__ENST00000478414.1_1_7:107543952-107546123:+|nuORF	REV__ENST00000478414.1_1_7:107543952-107546123:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2818603515625	2	523.283869	1044.55318	0.16685	8.7309E-05	-2.6355	-0.0013791	-2.4687	-0.0012918	523.2820944523448	89.928	0.42693	89.928	89.674	90.101	0					33	16	3	0	0	0	0.44023	1	22510	22510		20.871	6.2895	1	237110	+		5573	12066	3724	3752	7695	7695					0.032690103598497444
FYLISPLDF	9	Unmodified	_FYLISPLDF_					0	0	0		nc|ENSG00000120925|Q96K19-4|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170;ENSG00000120925|ENST00000527424|RNF170	nc|ENSG00000120925|Q96K19-4|RNF170	nc|ENSG00000120925|Q96K19-4|RNF170	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7943115234375	2	557.794601	1113.57465	0.46224	0.00025784	0.32357	0.00018048	0.78581	0.00043832	557.7948380040444	101.55	0.27577	101.55	101.44	101.72	0					28	17	2	0	0	0	0.23216	1	26000	26000		14.838	7.549	1	49742			5574	2138	3725	3753	7696	7696					0.02240395388548677
FYLISPLDF	9	Unmodified	_FYLISPLDF_					0	0	0		nc|ENSG00000120925|Q96K19-4|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170;ENSG00000120925|ENST00000527424|RNF170	nc|ENSG00000120925|Q96K19-4|RNF170	nc|ENSG00000120925|Q96K19-4|RNF170	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7951049804688	2	557.794601	1113.57465	0.65658	0.00036623	0.35966	0.00020062	1.0162	0.00056685	557.7948869265608	101.49	0.26019	101.53	101.38	101.64	0.042656					26	17	2	0	0	0	0.22344	2	25868	25833;25868		15.847	8.558	1	35689			5575	2138	3725	3753	7697;7698	7698					0.02240395388548677
FYLLISKTF	9	Unmodified	_FYLLISKTF_					0	0	0		nc|ENSG00000107949|Q9P287-4|BCCIP;nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.3262329101562	2	566.326068	1130.63758	0.4139	0.0002344	0.030238	1.7125E-05	0.44414	0.00025153	566.3258910874566	74.891	0.5397	74.891	74.635	75.174	0					36	19	3	0	0	0	0.0097877	1	17914	17914		67.838	45.102	1	295910			5576	1576	3726	3754	7699	7699					0.07748961176616831
FYLLISKTF	9	Unmodified	_FYLLISKTF_					0	0	0		nc|ENSG00000107949|Q9P287-4|BCCIP;nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.326416015625	2	566.326068	1130.63758	0.34108	0.00019316	0.060895	3.4487E-05	0.40198	0.00022765	566.3259320540457	74.911	0.62511	74.955	74.641	75.266	0.044037					40	22	3	0	0	0	0.0034419	1	17738	17738		106.94	63.082	1	239290			5577	1576	3726	3754	7700	7700					0.07748961176616831
FYLLLGNLL	9	Unmodified	_FYLLLGNLL_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3207397460938	2	533.320786	1064.62702	0.01782	9.5038E-06	-0.0097811	-5.2165E-06	0.008039	4.2874E-06	533.3207024446299	106.81	0.34906	106.81	106.5	106.85	0					62	33	3	0	0	0	0.0044242	2	27533	27498;27533		93.883	40.308	1	324610			5578	677	3727	3755	7701;7702	7702					0.09728978522184661
FYLLLGNLL	9	Unmodified	_FYLLLGNLL_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3203735351562	2	533.320786	1064.62702	0.0005302	2.8277E-07	0.094543	5.0422E-05	0.095073	5.0704E-05	533.3207867132516	106.89	0.42296	106.89	106.84	107.26	0					73	40	2	0	0	0	0.0052492	3	27568	27568;27602;27640		81.864	32.195	1	191730			5579	677	3727	3755	7703;7704;7705	7703					0.09728978522184661
FYLLLGNLL	9	Unmodified	_FYLLLGNLL_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3208618164062	2	533.320786	1064.62702	0.45787	0.00024419	-0.35008	-0.00018671	0.10778	5.7483E-05	533.3205887300971	106.65	0.39749	106.67	106.5	106.9	0.025711					96	39	3	0	0	0	0.0044242	3	27319	27282;27319;27356		93.883	40.308	1	352710			5580	677	3727	3755	7706;7707;7708	7707					0.09728978522184661
FYLLLGNLL	9	Unmodified	_FYLLLGNLL_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.321533203125	2	533.320786	1064.62702	0.45016	0.00024008	-0.21638	-0.0001154	0.23377	0.00012468	533.3206615739632	106.91	0.33073	106.94	106.9	107.23	0.025711					65	35	3	0	0	0	0.29105	1	27430	27430		7.9102	0	1	132900			5581	677	3727	3755	7709	7709					0.09728978522184661
FYLLNPYTI	9	Unmodified	_FYLLNPYTI_					0	0	0		nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7579345703125	2	572.307875	1142.6012	0.34191	0.00019568	-0.058638	-3.3559E-05	0.28327	0.00016212	572.3076808004216	91.134	0.32831	91.134	90.94	91.269	0					17	10	2	0	0	0	0.23908	1	22879	22879		16.149	3.6176	1	229120			5582	1261	3728	3756	7710	7710					0.035600842798885424
FYLLNPYTI	9	Unmodified	_FYLLNPYTI_					0	0	0		nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7582397460938	2	572.307875	1142.6012	0.14302	8.1852E-05	-0.44221	-0.00025308	-0.29919	-0.00017123	572.3073721189719	91.163	0.49788	91.199	90.966	91.464	0.035439					29	17	2	0	0	0	0.064501	1	22717	22717		47.749	15.443	1	137560			5583	1261	3728	3756	7711	7711					0.035600842798885424
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7953491210938	2	555.795132	1109.57571	0.34646	0.00019256	-0.27713	-0.00015403	0.069337	3.8537E-05	555.7947660081918	87.103	0.70784	87.103	86.895	87.603	0					44	29	2	0	0	0	1.0594E-10	1	21637	21637		176.84	115.48	1	594720			5584	657	3729	3757	7712	7712					0.025306097574684827
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7952880859375	2	555.795132	1109.57571	0.41365	0.0002299	-0.15047	-8.3631E-05	0.26318	0.00014627	555.7947929833506	87.028	0.69836	87.055	86.882	87.58	0.027573					52	29	3	0	0	0	0.0071888	1	21456	21456		85.272	49.145	1	1016200			5585	657	3729	3757	7713	7713					0.025306097574684827
FYLMQIVEI	9	Oxidation (M)	_FYLM(Oxidation (M))QIVEI_		FYLM(1)QIVEI		FYLM(60)QIVEI	0	0	1		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.305908203125	2	586.307018	1170.59948	0.69427	0.00040705	-1.5505	-0.00090906	-0.85621	-0.000502	586.3059485564887	87.777	0.56181	87.777	87.523	88.085	0					40	19	4	0	0	0	0.017478	2	21867	21820;21867		60.074	18.234	1	613110			5586	2883	3730	3758	7714;7715	7715		187			0.02100707199633689
FYLMQIVEI	9	Oxidation (M)	_FYLM(Oxidation (M))QIVEI_		FYLM(1)QIVEI		FYLM(69)QIVEI	0	0	1		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3057861328125	2	586.307018	1170.59948	0.55039	0.0003227	-1.4767	-0.0008658	-0.92631	-0.0005431	586.3058428211299	88.847	0.51748	88.847	88.626	89.143	0					45	21	3	0	0	0	0.0093779	1	22127	22127		69.105	25.247	1	550960			5587	2883	3730	3758	7716	7716		187			0.02100707199633689
FYLMQIVEI	9	Oxidation (M)	_FYLM(Oxidation (M))QIVEI_		FYLM(1)QIVEI		FYLM(60)QIVEI	0	0	1		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.80859375	2	586.307018	1170.59948	0.47575	0.00027893	-1.5267	-0.00089512	-1.051	-0.00061619	586.3057619103311	90.266	0.60654	90.266	90.077	90.683	0					60	24	3	0	0	0	0.017478	1	22582	22582		60.074	32.445	1	505580			5588	2883	3730	3758	7717	7717		187			0.02100707199633689
FYLMQIVEI	9	Oxidation (M)	_FYLM(Oxidation (M))QIVEI_		FYLM(1)QIVEI		FYLM(60)QIVEI	0	0	1		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.8087768554688	2	586.307018	1170.59948	0.69609	0.00040812	-1.0362	-0.00060753	-0.34012	-0.00019941	586.3062314872848	88.799	0.56509	88.831	88.578	89.144	0.032257					58	23	3	0	0	0	0.017478	2	21960	21960;21969		60.074	32.445	1	624390			5589	2883	3730	3758	7718;7719	7718		187			0.02100707199633689
FYLMQIVEI	9	Oxidation (M)	_FYLM(Oxidation (M))QIVEI_		FYLM(1)QIVEI		FYLM(79)QIVEI	0	0	1		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3056640625	2	586.307018	1170.59948	0.40431	0.00023705	-1.5214	-0.00089199	-1.1171	-0.00065494	586.3057974067777	90.235	0.59113	90.27	90.035	90.627	0.034058					61	24	3	0	0	0	0.006264	2	22437	22409;22437		78.728	51.099	1	441340			5590	2883	3730	3758	7720;7721	7721		187			0.02100707199633689
FYLMQIVEI	9	Unmodified	_FYLMQIVEI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3096313476562	2	578.309561	1154.60457	0.53409	0.00030887	-0.268	-0.00015499	0.26609	0.00015388	578.3091972721724	99.428	0.41542	99.428	99.244	99.659	0					52	21	3	0	0	0	0.048027	2	25428	25386;25428		43.772	15.286	1	885280			5591	2883	3730	3759	7722;7723	7723					0.0334501106224252
FYLMQIVEI	9	Unmodified	_FYLMQIVEI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3095703125	2	578.309561	1154.60457	0.60672	0.00035087	-0.21684	-0.0001254	0.38987	0.00022547	578.3092837456247	99.518	0.42613	99.561	99.24	99.666	0.042831					76	27	4	0	0	0	0.029291	2	25195	25195;25235		51.63	23.143	1	619950			5592	2883	3730	3759	7724;7725	7724					0.0334501106224252
FYLNLAYEF	9	Unmodified	_FYLNLAYEF_					0	0	0		ENST00000557380.5_1_14:50318303-50318570:-|nuORF	ENST00000557380.5_1_14:50318303-50318570:-|nuORF	ENST00000557380.5_1_14:50318303-50318570:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.291748046875	2	590.289682	1178.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.809	1	98.809	98.309	99.309	0								0	0	0	0.27782	1	25184	25184		3.5965	0	1				5593	7135	3731	3760	7726	7726					-0.017327926168036356
FYLPGFVKF	9	Unmodified	_FYLPGFVKF_					0	0	0		ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	ENST00000373903.1_1_9:123586619-123589169:-|nuORF	ENST00000373903.1_1_9:123586619-123589169:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.766845703125	2	559.307678	1116.6008	0.88427	0.00049458	-2.4676	-0.0013801	-1.5833	-0.00088555	559.3074061964005	81.522	0.73056	81.522	81.173	81.903	0					74	24	5	0	0	0	0.13538	1	19941	19941		36.044	23.513	1	256680			5594	1095	3732	3761	7727	7727					0.04716709350691417
FYLPGFVKF	9	Unmodified	_FYLPGFVKF_					0	0	0		ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	ENST00000373903.1_1_9:123586619-123589169:-|nuORF	ENST00000373903.1_1_9:123586619-123589169:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7667846679688	2	559.307678	1116.6008	0.61289	0.0003428	-1.9121	-0.0010695	-1.2992	-0.00072667	559.3075119923895	81.507	0.74312	81.528	81.162	81.905	0.021866					79	26	5	0	0	0	0.091303	1	19763	19763		44.407	23.953	1	298110			5595	1095	3732	3761	7728	7728					0.04716709350691417
FYLPGLAPVNF	11	Unmodified	_FYLPGLAPVNF_					0	0	0		TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant;ENSG00000125304|ENST00000376387|TM9SF2	TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant	TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.31787109375	2	619.334424	1236.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.401	1	97.442	96.942	97.942	0.040855								0	0	0	0.31731	1	24602	24602		8.7454	3.0136	1				5596	2287	3733	3762	7729	7729					0.04543462062542858
FYLSLVPQI	9	Unmodified	_FYLSLVPQI_					0	0	0			REV__ENST00000446382.2_1_9:6834760-6835018:+|nuORF	REV__ENST00000446382.2_1_9:6834760-6835018:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3106689453125	2	540.310418	1078.60628	0.66285	0.00035815	-0.69517	-0.00037561	-0.032321	-1.7463E-05	540.3099434420467	97.135	0.48984	97.176	96.965	97.455	0.040855					36	23	3	0	0	0	0.26684	1	24485	24485		10.824	0	1	131480	+		5597	11905	3734	3763	7730	7730					0.07012388142516102
FYLTKLQEYL	10	Unmodified	_FYLTKLQEYL_					0	0	0		ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.86767578125	3	439.907823	1316.70164	0.23362	0.00010277	-0.6248	-0.00027486	-0.39118	-0.00017208	439.9074245277347	62.56	0.43379	62.633	62.396	62.83	0.072701					19	14	2	0	0	0	0.31667	1	14016	14016		9.544	1.3884	1	73528			5598	1037	3735	3764	7731	7731					0.055956965429231786
FYLVAYAA	8	Unmodified	_FYLVAYAA_					0	0	0		ENST00000487651.5_1_7:100458687-100458885:+|nuORF;nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9	ENST00000487651.5_1_7:100458687-100458885:+|nuORF	ENST00000487651.5_1_7:100458687-100458885:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2417297363281	2	459.242004	916.469455	-0.0097639	-4.484E-06	-0.5792	-0.00026599	-0.58896	-0.00027048	459.2417825820274	31.1	0.30568	31.1	30.978	31.283	0					25	14	2	0	0	0	0.3576	1	4638	4638		0.79363	0	1	39609			5599	3298	3736	3765	7732	7732					0.007878989827872829
FYLVGYTLL	9	Unmodified	_FYLVGYTLL_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;LPCAT3|p.Q363Sfs*87|1|0.1|ENSG00000111684|chr12:6977700-6977701|-/G|frameshift_variant	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8046875	2	544.804968	1087.59538	0.26277	0.00014316	-1.4508	-0.00079043	-1.1881	-0.00064727	544.8043076362796	95.649	0.27745	95.649	95.575	95.852	0					18	11	2	0	0	0	0.17247	1	24247	24247		21.747	3.6117	1	136300			5600	1722	3737	3766	7733	7733					0.05508985768233288
FYLWLHNMFSL	11	Unmodified	_FYLWLHNMFSL_					0	0	0			REV__ENST00000568067.1_1_15:42503908-42510186:-|nuORF	REV__ENST00000568067.1_1_15:42503908-42510186:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.9121398925781	3	490.912803	1469.71658	-0.46443	-0.000228	-0.44847	-0.00022016	-0.9129	-0.00044815	490.91222138826726	42.298	0.6235	42.298	42.03	42.654	0					31	21	2	0	0	0	0.40904	1	8035	8035		2.2527	0	1	84738	+		5601	12510	3738	3767	7734	7734					0.0005086513924652536
FYLYTVNIL	9	Unmodified	_FYLYTVNIL_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3156127929688	2	573.3157	1144.61685	0.50856	0.00029156	0.12796	7.3361E-05	0.63652	0.00036493	573.3155521244114	93.431	0.60748	93.431	93.214	93.822	0					41	23	2	0	0	0	0.2125	1	23557	23557		17.113	7.5689	1	117430			5602	5070	3739	3768	7735	7735					0.05032370796948271
FYLYTVNIL	9	Unmodified	_FYLYTVNIL_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	573.3157	1144.61685	0.44445	0.00025481	0.72292	0.00041446	1.1674	0.00066927	573.3159522528128	93.648	0.56294	93.685	93.313	93.876	0.037369	0.127	0.00031869	NaN	17.113	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87128			5603	5070	3739	3768							0.05032370796948271
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_		FYM(1)DTSHLF		FYM(110)DTSHLF	0	0	1		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7547607421875	2	588.755149	1175.49575	0.21221	0.00012494	0.29797	0.00017543	0.51018	0.00030037	588.7551119149972	59.12	0.86253	59.12	58.818	59.68	0					106	32	4	0	0	0	0.0032694	3	13070	13070;13115;13167		108	89.862	1	691240			5604	2006	3740	3769	7736;7737;7738	7736		122			-0.08498199908035531
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_		FYM(1)DTSHLF		FYM(130)DTSHLF	0	0	1		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7551879882812	2	588.755149	1175.49575	0.49889	0.00029372	0.30938	0.00018215	0.80826	0.00047587	588.7550438956173	62	1.5763	62	61.714	63.291	0					146	61	3	0	0	0	0.00038046	2	13988	13937;13988		133.7	109.03	1	667250			5605	2006	3740	3769	7739;7740	7740		122			-0.08498199908035531
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_		FYM(1)DTSHLF		FYM(100)DTSHLF	0	0	1		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7544555664062	2	588.755149	1175.49575	0.4173	0.00024569	-0.2052	-0.00012081	0.2121	0.00012488	588.7549152158554	58.996	0.67955	59.067	58.891	59.571	0.070477					81	26	4	0	0	0	0.0042542	3	12909	12909;12956;13012		100.37	82.225	1	579680			5606	2006	3740	3769	7741;7742;7743	7741		122			-0.08498199908035531
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_		FYM(1)DTSHLF		FYM(130)DTSHLF	0	0	1		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7549438476562	2	588.755149	1175.49575	0.55316	0.00032568	0.3966	0.0002335	0.94976	0.00055918	588.7549655984361	62.005	1.2857	62.078	61.678	62.964	0.073421					137	51	4	0	0	0	0.00038046	3	13838	13746;13790;13838		133.7	115.57	1	525270			5607	2006	3740	3769	7744;7745;7746	7746		122			-0.08498199908035531
FYMDTSHLF	9	Unmodified	_FYMDTSHLF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7578125	2	580.757692	1159.50083	0.4816	0.00027969	0.29777	0.00017293	0.77938	0.00045263	580.7576880850298	71.352	0.65276	71.352	71.158	71.811	0					55	22	3	0	0	0	0.0032694	1	16830	16830		108	83.976	1	421880			5608	2006	3740	3770	7747	7747					-0.072538960454267
FYMDTSHLF	9	Unmodified	_FYMDTSHLF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7577514648438	2	580.757692	1159.50083	0.57906	0.00033629	0.087406	5.0762E-05	0.66647	0.00038705	580.7577572438801	71.292	0.65627	71.351	71.133	71.789	0.058578					51	23	3	0	0	0	0.0032694	1	16652	16652		108	83.976	1	329690			5609	2006	3740	3770	7748	7748					-0.072538960454267
FYMFDILF	8	Unmodified	_FYMFDILF_					0	0	0			REV__nc|ENSG00000114698|Q9NRQ2-2|PLSCR4	REV__nc|ENSG00000114698|Q9NRQ2-2|PLSCR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.265380859375	2	548.264622	1094.51469	0.44409	0.00024348	2.5896	0.0014198	3.0337	0.0016633	548.2657954455657	75.084	0.46986	75.128	74.943	75.412	0.044037					25	16	2	0	0	0	0.44023	1	17829	17829		20.871	0	1	540410	+		5610	8765	3741	3771	7749	7749					-0.028786185463332004
FYMFTLRL	8	Unmodified	_FYMFTLRL_					0	0	0			REV__GPR89B|p.W117R|1|0.55|ENSG00000188092|chr1:147944032-147944032|T/C|missense_variant	REV__GPR89B|p.W117R|1|0.55|ENSG00000188092|chr1:147944032-147944032|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7656860351562	2	545.791338	1089.56812	0.32273	0.00017614	-1.5414	-0.00084126	-1.2186	-0.00066511	545.7901426621363	55.708	0.36186	55.773	55.704	56.066	0.065128					18	12	2	0	0	0	0.33473	1	11945	11945		30.225	5.2339	1	78215	+		5611	12661	3742	3772	7750	7750					0.02692178956203861
FYMNPRLMT	9	Unmodified	_FYMNPRLMT_					0	0	0			REV__ENSG00000159346|ENST00000340990|ADIPOR1	REV__ENSG00000159346|ENST00000340990|ADIPOR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.267822265625	2	586.783187	1171.55182	0.56919	0.00033399	-0.36433	-0.00021379	0.20485	0.0001202	586.7830294724861	73.368	0.62923	73.421	73.152	73.782	0.052574					48	24	3	0	0	0	0.24635	1	17234	17234		10.824	0.75	1	667740	+		5612	9825	3743	3773	7751	7751					-0.02709270272202957
FYMQRRRF	8	Unmodified	_FYMQRRRF_					0	0	0			REV__ENST00000370076.2_1_1:107685885-107690770:+|nuORF	REV__ENST00000370076.2_1_1:107685885-107690770:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87799072265625	3	401.878315	1202.61312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.946	1	21.946	21.446	22.446	0								0	0	0	0.38822	1	1991	1991		0.40072	0.16487	1		+		5613	11588	3744	3774	7752	7752					0.019914225420961884
FYNALLKIP	9	Unmodified	_FYNALLKIP_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.818115234375	2	539.81841	1077.62227	0.45313	0.00024461	-0.31712	-0.00017119	0.13601	7.3421E-05	539.8181121163536	95.893	0.49514	95.931	95.687	96.182	0.038864					44	22	3	0	0	0	0.2491	1	24176	24176		8.5933	3.3626	1	315870	+		5614	8330	3745	3775	7753	7753					0.08656094379398382
FYNDDIFNF	9	Unmodified	_FYNDDIFNF_					0	0	0		nc|ENSG00000105948|A0AVF1-2|IFT56;nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26	nc|ENSG00000105948|A0AVF1-2|IFT56	nc|ENSG00000105948|A0AVF1-2|IFT56	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8563842773438	2	597.758746	1193.50294	0.16242	9.709E-05	0.7226	0.00043194	0.88503	0.00052903	597.7591158914081	87.881	0.51538	87.911	87.709	88.224	0.030037					30	17	2	0	0	0	0.16392	1	21721	21721		20.415	3.3016	1	220610			5615	1493	3746	3776	7754	7754					-0.08607144035954661
FYNDHIYQI	9	Unmodified	_FYNDHIYQI_					0	0	0			REV__ENSG00000177000|ENST00000376590|MTHFR	REV__ENSG00000177000|ENST00000376590|MTHFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7886962890625	2	606.787838	1211.56112	0.50921	0.00030898	1.2224	0.00074172	1.7316	0.0010507	606.7885849432447	90.074	0.7448	90.074	89.883	90.628	0					68	29	3	0	0	0	0.071704	2	22525	22525;22583		49.933	8.0934	1	1422200	+		5616	10419	3747	3777	7755;7756	7755					-0.03619462390679473
FYNDHIYQI	9	Unmodified	_FYNDHIYQI_					0	0	0			REV__ENSG00000177000|ENST00000376590|MTHFR	REV__ENSG00000177000|ENST00000376590|MTHFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2913818359375	2	606.787838	1211.56112	0.46772	0.00028381	1.4555	0.00088315	1.9232	0.001167	607.2902865686518	90.066	0.57085	90.1	89.906	90.476	0.034065					49	23	3	0	0	0	0.071704	2	22371	22371;22395		49.933	15.384	1	719640	+		5617	10419	3747	3777	7757;7758	7757					-0.03619462390679473
FYNDHIYQI	9	Unmodified	_FYNDHIYQI_					0	0	0			REV__ENSG00000177000|ENST00000376590|MTHFR	REV__ENSG00000177000|ENST00000376590|MTHFR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2913818359375	2	606.787838	1211.56112	0.46772	0.00028381	1.4555	0.00088315	1.9232	0.001167	607.2902865686518	90.066	0.57085	90.1	89.906	90.476	0.034065					49	23	3	0	0	0	0.081719	1	22371	22371		49.933	8.0934	1	719640	+		5618	10419	3747	3777	7759	7759					-0.03619462390679473
FYNDHIYQI	9	Unmodified	_FYNDHIYQI_					0	0	0			REV__ENSG00000177000|ENST00000376590|MTHFR	REV__ENSG00000177000|ENST00000376590|MTHFR	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	606.787838	1211.56112	0.50921	0.00030898	1.2224	0.00074172	1.7316	0.0010507	606.7885849432447	90.074	0.7448	90.074	89.883	90.628	0	-0.013054	-7.287E-05	NaN	49.933	68	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1422200	+		5619	10419	3747	3777							-0.03619462390679473
FYNLGRGLHQL	11	Unmodified	_FYNLGRGLHQL_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.53350830078125	3	439.906928	1316.69895	0.57136	0.00025134	1.2461	0.00054818	1.8175	0.00079952	439.90748623516896	62.766	0.49325	62.766	62.547	63.041	0					24	17	2	0	0	0	0.31044	1	14247	14247		7.4771	1.2852	1	92691			5620	2058	3748	3778	7760	7760					0.05327285928615311
FYNLLTRTF	9	Unmodified	_FYNLLTRTF_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.8170776367188	2	587.816399	1173.61824	0.69769	0.00041011	0.21619	0.00012708	0.91388	0.00053719	587.8165075498124	69.977	1.3429	69.977	69.732	71.074	0					107	48	4	0	0	0	0.00021732	3	16431	16383;16431;16480		136.39	96.925	1	1358400			5621	2238	3749	3779	7761;7762;7763	7762					0.038380048857106885
FYNLLTRTF	9	Unmodified	_FYNLLTRTF_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.8168334960938	2	587.816399	1173.61824	0.70637	0.00041522	0.13118	7.7113E-05	0.83756	0.00049233	587.8164045759665	69.927	1.1693	69.988	69.695	70.864	0.060562					112	47	3	0	0	0	7.2619E-06	2	16214	16214;16260		151.48	97.647	1	1197800			5622	2238	3749	3779	7764;7765	7764					0.038380048857106885
FYNPFQFEI	9	Unmodified	_FYNPFQFEI_					0	0	0		ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.786865234375	2	602.787307	1203.56006	0.40417	0.00024363	0.11254	6.7837E-05	0.51671	0.00031146	602.7872928212859	95.565	0.93051	95.565	95.305	96.235	0					119	44	4	0	0	0	0.0022565	7	24222	24152;24176;24222;24267;24310;24313;24363		114.2	90.181	1	2050200			5623	1733	3750	3780	7766;7767;7768;7769;7770;7771;7772	7768					-0.03357676759583228
FYNPFQFEI	9	Unmodified	_FYNPFQFEI_					0	0	0		ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.787353515625	2	602.787307	1203.56006	0.44158	0.00026618	0.14414	8.6888E-05	0.58572	0.00035307	602.7872775241395	95.525	0.87411	95.564	95.308	96.182	0.038864					89	41	3	0	0	0	0.0022565	4	24024	24024;24063;24112;24156		114.2	87.934	1	1305500			5624	1733	3750	3780	7773;7774;7775;7776	7773					-0.03357676759583228
FYNPVTSLL	9	Unmodified	_FYNPVTSLL_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.3024291992188	2	527.2844	1052.55425	0.36494	0.00019243	-0.39863	-0.00021019	-0.033689	-1.7764E-05	527.2841181515226	87.593	0.47723	87.593	87.348	87.825	0					22	17	2	0	0	0	0.17428	1	21788	21788		21.537	6.6987	1	125880			5625	4105	3751	3781	7777	7777					0.030072247287762366
FYNPVTSLL	9	Unmodified	_FYNPVTSLL_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.30224609375	2	527.2844	1052.55425	0.17685	9.3253E-05	0.26849	0.00014157	0.44534	0.00023482	527.2844541038679	87.603	0.36665	87.633	87.428	87.795	0.030037					17	13	2	0	0	0	0.24767	1	21638	21638		13.042	3.6593	1	84306			5626	4105	3751	3781	7778	7778					0.030072247287762366
FYNSFLEQL	9	Unmodified	_FYNSFLEQL_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF;DTD1-RALGAPA2|1|fusion	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7840576171875	2	580.784764	1159.55498	0.78695	0.00045705	-0.95481	-0.00055454	-0.16787	-9.7495E-05	580.783790243714	84.089	0.28368	84.089	83.931	84.215	0					20	9	3	0	0	0	0.026931	1	20739	20739		53.317	13.078	1	136120			5627	303	3752	3782	7779	7779					-0.018419806222027546
FYNSFLEQL	9	Unmodified	_FYNSFLEQL_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF;DTD1-RALGAPA2|1|fusion	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7840576171875	2	580.784764	1159.55498	0.55739	0.00032372	-0.83778	-0.00048657	-0.28039	-0.00016285	580.7839246692698	84.105	0.29337	84.127	83.948	84.241	0.021744					15	10	2	0	0	0	0.11383	1	20567	20567		29.437	2.2139	1	138580			5628	303	3752	3782	7780	7780					-0.018419806222027546
FYNSGLLDTF	10	Unmodified	_FYNSGLLDTF_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7821044921875	2	588.782222	1175.54989	0.93548	0.0005508	-0.5698	-0.00033549	0.36568	0.00021531	588.7818957588121	81.605	0.63371	81.605	81.374	82.008	0					35	21	2	0	0	0	0.00022792	2	19933	19933;19994		100.09	47.822	1	440670			5629	4355	3753	3783	7781;7782	7781					-0.03086284484834323
FYNSGLLDTF	10	Unmodified	_FYNSGLLDTF_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7820434570312	2	588.782222	1175.54989	0.67758	0.00039895	0.21239	0.00012505	0.88997	0.000524	588.7819988890237	81.586	0.64006	81.608	81.329	81.969	0.021866					48	22	3	0	0	0	5.0348E-05	2	19765	19765;19813		110.67	56.842	1	495820			5630	4355	3753	3783	7783;7784	7783					-0.03086284484834323
FYNVVVENL	9	Unmodified	_FYNVVVENL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2662353515625	2	548.787307	1095.56006	0.48842	0.00026804	1.2813	0.00070314	1.7697	0.00097118	548.7869808443402	75.386	0.38669	75.386	75.174	75.561	0					36	14	4	0	0	0	0.23347	1	18002	18002		13.615	2.1202	1	192210			5631	3254	3754	3784	7785	7785					0.016103232404248047
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7738647460938	2	528.773668	1055.53278	0.35068	0.00018543	0.37954	0.00020069	0.73023	0.00038612	528.7736734082711	96.289	0.84825	96.289	96.002	96.851	0					80	39	3	0	0	0	0.0042188	2	24401	24401;24445		101.72	57.315	1	1515600			5632	3074	3755	3785	7786;7787	7786					0.00723839700026474
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7738037109375	2	528.773668	1055.53278	0.37495	0.00019826	0.33679	0.00017808	0.71174	0.00037635	528.7736273452408	96.247	0.76436	96.287	96.037	96.802	0.039772					108	40	4	0	0	0	0.0042188	2	24236	24236;24278		101.72	63.571	1	665910			5633	3074	3755	3785	7788;7789	7788					0.00723839700026474
FYPFPVPPL	9	Unmodified	_FYPFPVPPL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.79443359375	2	538.794404	1075.57425	0.33343	0.00017965	0.070162	3.7803E-05	0.40359	0.00021745	538.7945262844217	95.901	0.78482	95.901	95.575	96.359	0					75	39	3	0	0	0	0.038949	1	24283	24283		45.75	28.808	1	185170			5634	2247	3756	3786	7790	7790					0.039490204593676026
FYPFPVPPL	9	Unmodified	_FYPFPVPPL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7946166992188	2	538.794404	1075.57425	0.4644	0.00025022	-0.23399	-0.00012607	0.23041	0.00012414	538.7943866576055	95.851	0.54571	95.89	95.59	96.135	0.038872					40	26	2	0	0	0	0.081567	1	24119	24119		36.466	26.283	1	156310			5635	2247	3756	3786	7791	7791					0.039490204593676026
FYPHAFNVKF	10	Unmodified	_FYPHAFNVKF_					0	0	0		nc|ENSG00000172409|Q92989-2|CLP1;ENSG00000172409|ENST00000533682|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.544921875	3	423.885353	1268.63423	0.49793	0.00021107	0.72334	0.00030661	1.2213	0.00051768	423.88586301449686	57.092	0.6563	57.092	56.885	57.541	0					34	23	2	0	0	0	0.31667	1	12487	12487		9.544	3.3521	1	155120			5636	4494	3757	3787	7792	7792					0.010657111226009874
FYPHAFNVKF	10	Unmodified	_FYPHAFNVKF_					0	0	0		nc|ENSG00000172409|Q92989-2|CLP1;ENSG00000172409|ENST00000533682|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	423.5448913574219	3	423.885353	1268.63423	0.23997	0.00010172	0.68896	0.00029204	0.92892	0.00039376	423.88594572766254	57.03	0.45943	57.097	56.915	57.375	0.067738					35	17	3	0	0	0	0.31754	1	12278	12278		6.1918	1.2948	1	114550			5637	4494	3757	3787	7793	7793					0.010657111226009874
FYPHDVLSL	9	Unmodified	_FYPHDVLSL_					0	0	0		nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-3|PCNX1	nc|ENSG00000100731|Q96RV3-3|PCNX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7825927734375	2	545.782025	1089.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.221	1	92.221	91.721	92.721	0								0	0	0	0.19239	1	23180	23180		19.257	0	1				5638	1216	3758	3788	7794	7794					0.008303405860033308
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.3106689453125	2	570.310418	1138.60628	0.48049	0.00027403	0.30205	0.00017226	0.78255	0.0004463	570.3104624091872	69.648	2.0538	69.648	69.215	71.269	0					187	73	5	0	0	0	0.065576	7	16312	16221;16265;16312;16357;16410;16418;16465		39.95	29.082	1	2758900			5639	2382	3759	3789	7795;7796;7797;7798;7799;7800;7801	7797					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.3109130859375	2	570.310418	1138.60628	0.2912	0.00016607	0.50584	0.00028849	0.79704	0.00045456	570.3105792693913	69.553	1.5686	69.615	69.233	70.802	0.062126					178	62	5	0	0	0	0.029291	5	16123	16079;16123;16173;16217;16271		51.63	33.495	1	2914500			5640	2382	3759	3789	7802;7803;7804;7805;7806	7803					0.0425238814250406
FYPQIINTF	9	Unmodified	_FYPQIINTF_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7974243164062	2	571.797675	1141.5808	0.45567	0.00026055	-0.20334	-0.00011627	0.25234	0.00014429	571.7974536142736	82.641	0.62518	82.641	82.426	83.051	0					35	21	2	0	0	0	0.03472	1	20278	20278		47.749	22.349	1	161900			5641	1066	3760	3790	7807	7807					0.015669136200813227
FYPQIINTF	9	Unmodified	_FYPQIINTF_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.773681640625	2	571.797675	1141.5808	0.28822	0.0001648	0.27346	0.00015636	0.56168	0.00032116	571.7978717794094	82.594	0.53351	82.616	82.398	82.931	0.021744					41	18	3	0	0	0	0.23478	1	20055	20055		12.241	0.60036	1	155210			5642	1066	3760	3790	7808	7808					0.015669136200813227
FYPTLLYTL	9	Unmodified	_FYPTLLYTL_					0	0	0		nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1;ENSG00000110536|ENST00000326674|PTPMT1	nc|ENSG00000110536|Q8WUK0-2|PTPMT1	nc|ENSG00000110536|Q8WUK0-2|PTPMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2973022460938	2	565.810251	1129.60595	0.4627	0.0002618	-0.09274	-5.2473E-05	0.36996	0.00020933	565.8102368640687	93.548	0.53915	93.548	93.358	93.898	0					56	20	4	0	0	0	0.30005	1	23549	23549		6.7232	1.4925	1	296150			5643	1672	3761	3791	7809	7809					0.04632968422674821
FYPTLLYTL	9	Unmodified	_FYPTLLYTL_					0	0	0		nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1;ENSG00000110536|ENST00000326674|PTPMT1	nc|ENSG00000110536|Q8WUK0-2|PTPMT1	nc|ENSG00000110536|Q8WUK0-2|PTPMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8102416992188	2	565.810251	1129.60595	0.415	0.00023481	0.075069	4.2475E-05	0.49007	0.00027729	565.8102782664317	93.535	0.49105	93.573	93.359	93.85	0.037369					49	18	4	0	0	0	0.10067	3	23444	23395;23400;23444		32.305	13.049	1	372790			5644	1672	3761	3791	7810;7811;7812	7812					0.04632968422674821
FYPYGLQTF	9	Unmodified	_FYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2766723632812	2	568.276575	1134.5386	0.42353	0.00024068	-1.6149	-0.00091771	-1.1914	-0.00067703	568.276318990934	79.435	0.78378	79.435	78.982	79.765	0					90	26	4	0	0	0	0.0045534	3	19268	19268;19319;19356		88.954	67.207	1	1900000			5645	1172	3762	3792	7813;7814;7815	7813					-0.02329061788304898
FYPYGLQTF	9	Unmodified	_FYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2767333984375	2	568.276575	1134.5386	0.2046	0.00011627	-1.5802	-0.00089802	-1.3756	-0.00078175	568.2765083306085	79.333	1.259	79.359	78.932	80.191	0.026428					122	42	5	0	0	0	0.0045534	3	19107	19107;19155;19186		88.954	67.207	1	1770300			5646	1172	3762	3792	7816;7817;7818	7816					-0.02329061788304898
FYPYGQYQF	9	Unmodified	_FYPYGQYQF_					0	0	0		ENST00000558180.2_1_16:54318400-54319510:-|nuORF;ENSG00000177508|ENST00000329734|IRX3	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.33642578125	2	606.771657	1211.52876	0.29292	0.00017774	-0.81174	-0.00049254	-0.51881	-0.0003148	606.7709566524661	72.638	0.6789	72.638	72.348	73.027	0					36	23	2	0	0	0	0.25174	1	17287	17287		7.2892	1.0834	1	121770			5647	4705	3763	3793	7819	7819					-0.06854249793673262
FYQGLVYLL	9	Unmodified	_FYQGLVYLL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3102416992188	2	558.310418	1114.60628	0.62326	0.00034797	0.123	6.8673E-05	0.74626	0.00041665	558.3104344126609	93.758	0.38602	93.796	93.511	93.897	0.037369					24	14	2	0	0	0	0.25209	1	23514	23514		12.532	0	1	138270			5648	982	3764	3794	7820	7820					0.053563881425361615
FYQKEHWNYF	10	Unmodified	_FYQKEHWNYF_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2156066894531	3	487.891055	1460.65134	0.030854	1.5053E-05	-0.22315	-0.00010887	-0.1923	-9.3821E-05	487.89090052110396	50.886	0.24183	50.886	50.68	50.922	0					13	7	2	0	0	0	0.31851	1	10537	10537		0.77653	0	1	33331			5649	5303	3765	3795	7821	7821					-0.06056413062242427
FYQKEHWNYF	10	Unmodified	_FYQKEHWNYF_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	487.891055	1460.65134	0.13344	6.5105E-05	-0.025911	-1.2642E-05	0.10753	5.2463E-05	487.89126850457427	50.633	0.4128	50.706	50.551	50.964	0.07312	-0.089948	0.00016089	NaN	2.086	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52834			5650	5303	3765	3795							-0.06056413062242427
FYQPKIQQF	9	Unmodified	_FYQPKIQQF_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8161010742188	2	599.816399	1197.61824	0.60571	0.00036331	-0.06934	-4.1591E-05	0.53637	0.00032172	599.8160878107342	54.896	0.67429	54.896	54.706	55.38	0					57	24	4	0	0	0	0.011655	2	11786	11786;11845		64.236	49.398	1	316580			5651	154	3766	3796	7822;7823	7822					0.027340048857013244
FYQPKIQQF	9	Unmodified	_FYQPKIQQF_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.81640625	2	599.816399	1197.61824	0.61308	0.00036774	-0.35496	-0.00021291	0.25813	0.00015483	599.8160769997271	54.861	0.47733	54.926	54.738	55.216	0.065128					43	19	3	0	0	0	0.011655	2	11640	11640;11692		64.236	51.194	1	337400			5652	154	3766	3796	7824;7825	7824					0.027340048857013244
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENST00000443790.1_1_3:5229490-5231099:+|nuORF;ENSG00000134109|ENST00000256497|EDEM1	ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENST00000443790.1_1_3:5229490-5231099:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8117065429688	2	602.811116	1203.60768	0.57984	0.00034953	0.21203	0.00012781	0.79186	0.00047734	602.8111666235435	71.17	0.81848	71.17	70.964	71.783	0					58	27	4	0	0	0	0.0042703	4	16745	16745;16791;16798;16848		99.755	74.356	1	993240			5653	2646	3767	3797	7826;7827;7828;7829	7826					0.014020222312637998
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENST00000443790.1_1_3:5229490-5231099:+|nuORF;ENSG00000134109|ENST00000256497|EDEM1	ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENST00000443790.1_1_3:5229490-5231099:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8117065429688	2	602.811116	1203.60768	0.68451	0.00041263	0.29664	0.00017882	0.98115	0.00059145	602.8112032638771	71.093	0.98579	71.151	70.91	71.896	0.058578					64	35	4	0	0	0	0.0016252	2	16604	16604;16654		118.07	81.941	1	899490			5654	2646	3767	3797	7830;7831	7830					0.014020222312637998
FYQTYKEL	8	Unmodified	_FYQTYKEL_					0	0	0		L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|12|3|sense	L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|12|3|sense	L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|12|3|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7568969726562	2	546.274032	1090.53351	0.20542	0.00011222	0.4136	0.00022594	0.61902	0.00033815	546.2741962467488	49.004	0.42449	49.004	48.858	49.283	0					21	14	2	0	0	0	0.34579	1	10057	10057		23.148	2.6948	1	59679			5655	7389	3768	3798	7832	7832					-0.008133656509016873
FYQVAEYTF	9	Unmodified	_FYQVAEYTF_					0	0	0		nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP	nc|ENSG00000102032|P51606-3|RENBP	nc|ENSG00000102032|P51606-3|RENBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8233642578125	2	584.27149	1166.52843	0.53439	0.00031223	0.090358	5.2794E-05	0.62475	0.00036502	584.2714538297777	74.428	0.62365	74.428	74.144	74.767	0					29	22	2	0	0	0	0.2094	1	17750	17750		22.736	14.581	1	167650			5656	1289	3769	3799	7833	7833					-0.0481766951352256
FYQVAEYTF	9	Unmodified	_FYQVAEYTF_					0	0	0		nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP	nc|ENSG00000102032|P51606-3|RENBP	nc|ENSG00000102032|P51606-3|RENBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8235473632812	2	584.27149	1166.52843	0.73882	0.00043167	-0.22515	-0.00013155	0.51367	0.00030012	584.2715086042458	74.371	0.44631	74.419	74.227	74.673	0.048538					28	15	3	0	0	0	0.20294	1	17575	17575		24.991	11.948	1	187950			5657	1289	3769	3799	7834	7834					-0.0481766951352256
FYRFLKLF	8	Unmodified	_FYRFLKLF_					0	0	0			REV__ENST00000502290.1_1_4:141463686-141471526:+|nuORF	REV__ENST00000502290.1_1_4:141463686-141471526:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7661743164062	2	567.328945	1132.64334	0.54882	0.00031136	2.2339	0.0012673	2.7827	0.0015787	567.3301650889774	82.252	0.44381	82.252	82.066	82.509	0					20	15	2	0	0	0	0.35759	1	20203	20203		10.183	3.8293	1	61085	+		5658	12200	3770	3800	7835	7835					0.08232104478906876
FYRKEKRP	8	Unmodified	_FYRKEKRP_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;nc|ENSG00000197816|Q9P1Z9|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.24755859375	2	562.322183	1122.62981	0.1437	8.0806E-05	3.8461	0.0021628	3.9898	0.0022436	562.826541436326	48.964	0.25508	49.041	48.93	49.185	0.076607					13	9	2	0	0	0	0.3576	1	9839	9839		2.3027	0.82083	1	36575			5659	5322	3771	3801	7836	7836					0.07340246699709496
FYRSTAPS	8	Unmodified	_FYRSTAPS_					0	0	0		nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL	nc|ENSG00000116990|P12524-2|MYCL	nc|ENSG00000116990|P12524-2|MYCL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.72930908203125	2	464.729792	927.445031	0.34485	0.00016026	0.1501	6.9757E-05	0.49495	0.00023002	464.72953284398034	56.136	0.37977	56.136	55.948	56.328	0					24	13	2	0	0	0	0.020288	2	12184	12184;12216		78.149	17.76	1	318940			5660	1983	3772	3802	7837;7838	7837					-0.02159361170720331
FYRSTAPS	8	Unmodified	_FYRSTAPS_					0	0	0		nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL	nc|ENSG00000116990|P12524-2|MYCL	nc|ENSG00000116990|P12524-2|MYCL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.72979736328125	2	464.729792	927.445031	0.032426	1.5069E-05	0.49026	0.00022784	0.52268	0.00024291	464.72970066391787	56.093	0.38613	56.159	55.948	56.334	0.066448					27	14	3	0	0	0	0.020288	3	12015	12015;12064;12073		78.149	17.76	1	256530			5661	1983	3772	3802	7839;7840;7841	7839					-0.02159361170720331
FYRSYFSQF	9	Unmodified	_FYRSYFSQF_					0	0	0		nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK	nc|ENSG00000168297|Q7Z7A4-7|PXK	nc|ENSG00000168297|Q7Z7A4-7|PXK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.790283203125	2	622.790381	1243.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.462	1	61.462	60.962	61.962	0								0	0	0	0.092347	1	13802	13802		35.612	17.239	1				5662	4275	3773	3803	7842	7842					-0.04583158528066633
FYRTLTWAH	9	Unmodified	_FYRTLTWAH_					0	0	0		nc|ENSG00000177669|Q96T53-2|MBOAT4;ENSG00000177669|ENST00000320542|MBOAT4	nc|ENSG00000177669|Q96T53-2|MBOAT4	nc|ENSG00000177669|Q96T53-2|MBOAT4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7949829101562	2	597.806365	1193.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.573	1	68.636	68.136	69.136	0.063004								0	0	0	0.25692	1	15819	15819		7.9102	0	1				5663	4714	3774	3804	7843	7843					0.009122539457393941
FYRTVSSFGV	10	Unmodified	_FYRTVSSFGV_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8051147460938	2	581.798206	1161.58186	0.64288	0.00037403	3.2365	0.001883	3.8794	0.002257	581.7982154707277	53.93	0.71249	53.93	53.739	54.451	0					53	25	4	0	0	0	0.44496	1	11538	11538		5.7319	0	1	195250			5664	2241	3775	3805	7844	7844					0.007531279889917641
FYRWIVDF	8	Unmodified	_FYRWIVDF_					0	0	0			REV__tr|U7T5S5|U7T5S5_FUSNUCarbonstarvationproteinCstAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00374PE=3SV=1	REV__tr|U7T5S5|U7T5S5_FUSNUCarbonstarvationproteinCstAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00374PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7582397460938	2	573.292559	1144.57057	0.10892	6.2444E-05	-0.40945	-0.00023474	-0.30053	-0.00017229	573.7950176817953	91.063	0.49114	91.098	90.763	91.254	0.035446					21	17	2	0	0	0	0.35713	1	22717	22717		9.3474	0	1	94846	+		5665	13306	3776	3806	7845	7845					0.0040635068551182485
FYSIINSGCF	10	Unmodified	_FYSIINSGCF_					0	0	0			REV__OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant	REV__OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2852172851562	2	575.765517	1149.51648	0.35642	0.00020521	-0.22976	-0.00013229	0.12666	7.2929E-05	575.7651975972399	55.645	0.6079	55.71	55.402	56.01	0.065128					35	21	2	0	0	0	0.42901	1	11977	11977		8.7454	0.83525	1	199300	+		5666	9624	3777	3807	7846	7846					-0.0522960952835092
FYSLFSETI	9	Unmodified	_FYSLFSETI_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8301391601562	2	553.773865	1105.53318	0.5698	0.00031554	1.1386	0.00063053	1.7084	0.00094607	553.7747745795891	86.26	0.19508	86.285	86.164	86.359	0.025177					9	5	2	0	0	0	0.16944	1	21200	21200		30.637	5.2372	1	49983			5667	5692	3778	3808	7847	7847					-0.015367853707630275
FYSMIRYNE	9	Unmodified	_FYSMIRYNE_					0	0	0			REV__nc|ENSG00000166483|P30291-2|WEE1	REV__nc|ENSG00000166483|P30291-2|WEE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.499267578125	3	408.190225	1221.54884	0.32886	0.00013424	0.41484	0.00016933	0.7437	0.00030357	408.1903895931993	67.949	0.51423	68.012	67.845	68.359	0.063507					29	18	2	0	0	0	0.25787	1	15590	15590		2.9952	0.90923	1	143330	+		5668	10083	3779	3809	7848	7848					-0.05306822125362487
FYSNIQTVI	9	Unmodified	_FYSNIQTVI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7877197265625	2	542.787307	1083.56006	0.5533	0.00030033	1.0908	0.00059207	1.6441	0.0008924	542.788003988049	70.487	0.79437	70.487	70.17	70.964	0					64	29	3	0	0	0	0.032194	2	16514	16514;16560		49.554	14.327	1	622630			5669	4832	3780	3810	7849;7850	7849					0.02162323240418118
FYSNIQTVI	9	Unmodified	_FYSNIQTVI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7872314453125	2	542.787307	1083.56006	0.60884	0.00033047	1.1318	0.00061431	1.7406	0.00094478	542.7880044569052	70.34	0.84124	70.401	70.128	70.969	0.060562					67	33	3	0	0	0	0.10543	2	16345	16345;16397		31.268	6.5945	1	434740			5670	4832	3780	3810	7851;7852	7851					0.02162323240418118
FYSRLLQKF	9	Unmodified	_FYSRLLQKF_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3407592773438	2	601.340041	1200.66553	0.27801	0.00016718	0.23753	0.00014284	0.51554	0.00031002	601.340226665464	52.509	0.33659	52.509	52.368	52.704	0					15	11	2	0	0	0	0.30757	1	11082	11082		5.7319	3.4291	1	47923			5671	4584	3781	3811	7853	7853					0.07322284156703063
FYSSLKIAF	9	Unmodified	_FYSSLKIAF_					0	0	0		tr|U7T4V7|U7T4V7_FUSNU2-C-methyl-D-erythritol4-phosphatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispDPE=3SV=1	tr|U7T4V7|U7T4V7_FUSNU2-C-methyl-D-erythritol4-phosphatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispDPE=3SV=1	tr|U7T4V7|U7T4V7_FUSNU2-C-methyl-D-erythritol4-phosphatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispDPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7951049804688	2	538.294768	1074.57498	0.38891	0.00020935	-1.9582	-0.0010541	-1.5693	-0.00084473	538.2941303264346	87.449	0.7114	87.449	87.237	87.948	0					34	25	2	0	0	0	0.25209	1	21781	21781		12.532	0	1	137960			5672	13719	3782	3812	7854	7854					0.040678151084193814
FYSSVNKNSVL	11	Unmodified	_FYSSVNKNSVL_					0	0	0		ENSG00000123388|ENST00000546378|HOXC11	ENSG00000123388|ENST00000546378|HOXC11	ENSG00000123388|ENST00000546378|HOXC11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.9017333984375	3	419.88731	1256.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.171	1	19.261	18.761	19.761	0.089705								0	0	0	0.3155	1	1213	1213		4.7159	0.87001	1				5673	2216	3783	3813	7855	7855					0.0220476484360006
FYSVETFLL	9	Unmodified	_FYSVETFLL_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7303466796875	2	559.792058	1117.56956	0.6049	0.00033862	-0.36341	-0.00020343	0.24149	0.00013518	559.7918623059101	93.586	0.35365	93.586	93.385	93.738	0					21	13	2	0	0	0	0.19376	1	23583	23583		25.399	8.457	1	77341			5674	3420	3784	3814	7856	7856					0.01548091525955897
FYSVETFLL	9	Unmodified	_FYSVETFLL_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7305297851562	2	559.792058	1117.56956	0.60534	0.00033886	-0.16634	-9.3113E-05	0.439	0.00024575	559.7916393745185	93.528	0.40754	93.565	93.359	93.766	0.037361					24	15	2	0	0	0	0.21603	1	23407	23407		20.454	8.9589	1	73564			5675	3420	3784	3814	7857	7857					0.01548091525955897
FYTAIAQAF	9	Unmodified	_FYTAIAQAF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8182373046875	2	516.263468	1030.51238	0.40536	0.00020927	0.12679	6.5457E-05	0.53215	0.00027473	516.2635371013457	75.355	0.31635	75.399	75.209	75.525	0.044037					15	10	2	0	0	0	0.19376	1	17883	17883		19.257	12.534	1	100170			5676	1416	3785	3815	7858	7858					-0.0016533095979411883
FYTDPSYFF	9	Unmodified	_FYTDPSYFF_					0	0	0		ENSG00000132970|ENST00000335327|WASF3;nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3	ENSG00000132970|ENST00000335327|WASF3	ENSG00000132970|ENST00000335327|WASF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.8109741210938	2	593.758215	1185.50188	0.26952	0.00016003	1.2486	0.00074136	1.5181	0.00090139	593.758929156201	87.352	0.50804	87.352	87.095	87.603	0					25	19	2	0	0	0	0.2229	1	21707	21707		19.257	14.026	1	109140			5677	2608	3786	3816	7859	7859					-0.08345358404858416
FYTDPSYFF	9	Unmodified	_FYTDPSYFF_					0	0	0		ENSG00000132970|ENST00000335327|WASF3;nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3	ENSG00000132970|ENST00000335327|WASF3	ENSG00000132970|ENST00000335327|WASF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.8108520507812	2	593.758215	1185.50188	0.14988	8.899E-05	1.5408	0.00091486	1.6907	0.0010038	593.7592344918193	87.332	0.48651	87.36	87.093	87.58	0.027573					29	19	2	0	0	0	0.21603	1	21536	21536		20.454	11.106	1	98131			5678	2608	3786	3816	7860	7860					-0.08345358404858416
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.7979125976562	2	595.797675	1189.5808	0.13579	8.0902E-05	0.4232	0.00025214	0.55899	0.00033304	595.797835002467	90.112	1.349	90.112	89.834	91.183	0					177	51	5	0	0	0	4.0719E-13	7	22577	22490;22537;22577;22627;22678;22726;22782		189.78	189.78	1	8688300			5679	2969	3787	3817	7861;7862;7863;7864;7865;7866;7867	7863					-0.006410863799146682
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.798828125	2	595.797675	1189.5808	0.32996	0.00019659	-0.1852	-0.00011034	0.14476	8.6248E-05	595.797550578091	91.44	0.39261	91.44	91.209	91.602	0					24	14	2	0	0	0	0.20358	1	22901	22901		18.146	4.2403	1	130670			5680	2969	3787	3817	7868	7868					-0.006410863799146682
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.7978515625	2	595.797675	1189.5808	-0.092064	-5.4852E-05	0.63036	0.00037557	0.5383	0.00032072	595.7979624441052	90.051	1.4046	90.085	89.848	91.253	0.034065					148	55	4	0	0	0	4.0719E-13	6	22365	22322;22365;22408;22456;22504;22551		189.78	149.82	1	7107600			5681	2969	3787	3817	7869;7870;7871;7872;7873;7874	7870					-0.006410863799146682
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.7967529296875	2	595.797675	1189.5808	0.058168	3.4657E-05	0.79879	0.00047592	0.85696	0.00051058	595.7979464228605	91.383	0.57583	91.418	91.169	91.745	0.035446					38	20	3	0	0	0	0.2125	1	22721	22721		17.113	6.3134	1	103820			5682	2969	3787	3817	7875	7875					-0.006410863799146682
FYTKRFQEL	9	Unmodified	_FYTKRFQEL_					0	0	0		ENST00000580356.5_1_17:8159124-8159921:+|nuORF;ENSG00000178921|ENST00000314666|PFAS	ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENST00000580356.5_1_17:8159124-8159921:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.2170715332031	3	411.220513	1230.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.417	1	48.417	47.917	48.917	0								0	0	0	0.20456	1	9833	9833		17.443	0.87677	1				5683	4757	3788	3818	7876	7876					0.03361389914425672
FYTLIPHDF	9	Unmodified	_FYTLIPHDF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8001098632812	2	576.78985	1151.56515	0.48936	0.00028226	-0.55937	-0.00032264	-0.07001	-4.0381E-05	576.7894873571804	71.199	0.24571	71.258	71.133	71.378	0.058578					11	8	2	0	0	0	0.10067	1	16630	16630		32.305	13.049	1	75913			5684	3183	3789	3819	7877	7877					-0.0045737289697171946
FYTLPFHLI	9	Unmodified	_FYTLPFHLI_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8433227539062	2	575.81841	1149.62227	0.55713	0.00032081	-0.3809	-0.00021933	0.17624	0.00010148	575.81811733863	83.594	0.53031	83.594	83.401	83.931	0					28	17	2	0	0	0	0.1217	1	20582	20582		38.151	13.477	1	236690			5685	4745	3790	3820	7878	7878					0.05344094379415765
FYTLPFHLI	9	Unmodified	_FYTLPFHLI_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8431396484375	2	575.81841	1149.62227	0.27638	0.00015914	0.066939	3.8545E-05	0.34332	0.00019769	575.8182257736088	83.623	0.42621	83.644	83.44	83.866	0.021744					32	14	3	0	0	0	0.15192	1	20406	20406		32.117	15.004	1	171340			5686	4745	3790	3820	7879	7879					0.05344094379415765
FYTMYNRK	8	Unmodified	_FYTMYNRK_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7734375	2	561.773677	1121.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.789	1	16.789	16.289	17.289	0								0	0	0	0.38822	1	797	797		0.69038	0.088878	1				5687	4732	3791	3821	7880	7880					-0.02310483571613986
FYTMYNRK	8	Unmodified	_FYTMYNRK_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.773681640625	2	561.773677	1121.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.687	1	16.765	16.265	17.265	0.077806								0	0	0	0.38822	1	708	708		0.69038	0.088878	1				5688	4732	3791	3821	7881	7881					-0.02310483571613986
FYTMYNRK	8	Unmodified	_FYTMYNRK_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7741088867188	2	561.773677	1121.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.44	1	22.542	22.042	23.042	0.10178								0	0	0	0.38822	1	2026	2026		0.69038	0.088878	1				5689	4732	3791	3821	7882	7882					-0.02310483571613986
FYTPLLHFI	9	Unmodified	_FYTPLLHFI_					0	0	0			REV__ENST00000482868.1_1_9:111798484-111800393:-|nuORF	REV__ENST00000482868.1_1_9:111798484-111800393:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.28564453125	2	575.81841	1149.62227	0.46502	0.00026777	-1.15	-0.00066217	-0.68494	-0.0003944	575.8172044509853	55.657	0.30835	55.657	55.441	55.749	0					16	10	2	0	0	0	0.25504	1	12016	12016		4.756	0	1	88757	+		5690	8580	3792	3822	7883	7883					0.05344094379415765
FYTQLLQEL	9	Unmodified	_FYTQLLQEL_					0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.320556640625	2	577.808239	1153.60193	0.3136	0.0001812	-1.3335	-0.00077053	-1.0199	-0.00058933	577.8078525026885	86.072	0.63705	86.072	85.83	86.467	0					58	24	4	0	0	0	0.013066	1	21297	21297		63.227	28.826	1	375350			5691	1969	3793	3823	7884	7884					0.03126878928969745
FYTQLLQEL	9	Unmodified	_FYTQLLQEL_					0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3211059570312	2	577.808239	1153.60193	0.49549	0.0002863	-1.0118	-0.00058463	-0.51632	-0.00029833	577.8079492719015	86.047	0.60592	86.072	85.841	86.447	0.025169					27	21	2	0	0	0	0.013066	1	21153	21153		63.227	35.599	1	375830			5692	1969	3793	3823	7885	7885					0.03126878928969745
FYTVGSGEL	9	Unmodified	_FYTVGSGEL_					0	0	0		tr|U7T2E8|U7T2E8_FUSNUPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mraYPE=3SV=1	tr|U7T2E8|U7T2E8_FUSNUPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mraYPE=3SV=1	tr|U7T2E8|U7T2E8_FUSNUPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mraYPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7370910644531	2	486.737283	971.460012	-0.12778	-6.2194E-05	0.53898	0.00026234	0.4112	0.00020015	486.73745956100925	72.027	0.99815	72.027	71.584	72.582	0					61	34	2	0	0	0	0.29576	1	16975	16975		7.2892	0	1	190080			5693	13686	3794	3824	7886	7886					-0.026859140933765957
FYVALERVF	9	Unmodified	_FYVALERVF_					0	0	0		RABIF|p.S121F|1|0.18|ENSG00000183155|chr1:202880988-202880988|G/A|missense_variant	RABIF|p.S121F|1|0.18|ENSG00000183155|chr1:202880988-202880988|G/A|missense_variant	RABIF|p.S121F|1|0.18|ENSG00000183155|chr1:202880988-202880988|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3256225585938	2	572.313492	1142.61243	0.0064517	3.6924E-06	0.30408	0.00017403	0.31054	0.00017772	572.3136885016887	73.144	0.14912	73.144	73.053	73.202	0					6	4	2	0	0	0	0.25051	1	17349	17349		7.9102	2.6795	1	22213			5694	7679	3795	3825	7887	7887					0.04682906374023332
FYVALERVF	9	Unmodified	_FYVALERVF_					0	0	0		RABIF|p.S121F|1|0.18|ENSG00000183155|chr1:202880988-202880988|G/A|missense_variant	RABIF|p.S121F|1|0.18|ENSG00000183155|chr1:202880988-202880988|G/A|missense_variant	RABIF|p.S121F|1|0.18|ENSG00000183155|chr1:202880988-202880988|G/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.313492	1142.61243	0.11586	6.6306E-05	0.033636	1.925E-05	0.14949	8.5556E-05	572.313440374971	72.869	0.11122	72.922	72.866	72.977	0.052574	-0.11117	-5.2848E-05	NaN	7.9102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38269			5695	7679	3795	3825							0.04682906374023332
FYVDTVRAF	9	Unmodified	_FYVDTVRAF_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.260498046875	2	559.287474	1116.5604	0.56438	0.00031565	1.4884	0.00083244	2.0528	0.0011481	559.2879635728335	53.354	0.1911	53.42	53.291	53.482	0.06543					12	9	2	0	0	0	0.2298	1	11213	11213		16.942	1.0951	1	64023			5696	4689	3796	3826	7888	7888					0.0067774296028346726
FYVIDRGTF	9	Unmodified	_FYVIDRGTF_					0	0	0		ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.28662109375	2	559.287474	1116.5604	0.43261	0.00024195	1.5318	0.00085669	1.9644	0.0010986	559.2874867309305	79.159	0.27204	79.159	78.982	79.254	0					11	8	2	0	0	0	0.22344	1	19220	19220		15.847	5.0233	1	57952			5697	349	3797	3827	7889	7889					0.0067774296028346726
FYVKITDNS	9	Unmodified	_FYVKITDNS_					0	0	0			REV__ENSG00000147432|ENST00000289957|CHRNB3	REV__ENSG00000147432|ENST00000289957|CHRNB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7776489257812	2	543.776939	1085.53933	0.26355	0.00014331	-0.11187	-6.0834E-05	0.15168	8.2479E-05	543.7768667871305	15.323	0.31949	15.396	15.295	15.615	0.072399					91	40	3	0	0	0	0.34754	1	511	511		0.45834	0	1	104500	+		5698	9570	3798	3828	7890	7890					-2.2671392571282922E-05
FYVKYVQIF	9	Unmodified	_FYVKYVQIF_					0	0	0		nc|ENSG00000132321|Q86XH1-2|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1	nc|ENSG00000132321|Q86XH1-2|IQCA1	nc|ENSG00000132321|Q86XH1-2|IQCA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3161010742188	2	603.831517	1205.64848	0.21853	0.00013196	-1.0694	-0.00064572	-0.85084	-0.00051376	603.8308965566009	72.876	0.5135	72.876	72.631	73.145	0					37	17	3	0	0	0	0.20845	1	17264	17264		21.747	9.506	1	329080			5699	2564	3799	3829	7891	7891					0.05388363550878239
FYVKYVQIF	9	Unmodified	_FYVKYVQIF_					0	0	0		nc|ENSG00000132321|Q86XH1-2|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1	nc|ENSG00000132321|Q86XH1-2|IQCA1	nc|ENSG00000132321|Q86XH1-2|IQCA1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	603.831517	1205.64848	0.40529	0.00024473	-0.9572	-0.00057799	-0.55191	-0.00033326	603.830668078571	72.83	0.52898	72.883	72.623	73.152	0.052574	0.0036926	7.7592E-05	NaN	15.847	37	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299420			5700	2564	3799	3829							0.05388363550878239
FYVLSTLAF	9	Unmodified	_FYVLSTLAF_					0	0	0		nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7893676757812	2	530.789318	1059.56408	0.44557	0.0002365	0.058858	3.1241E-05	0.50443	0.00026775	530.7893326992822	94.125	0.65044	94.125	93.979	94.63	0					62	32	3	0	0	0	0.12809	1	23731	23731		26.884	0	1	300390			5701	3215	3800	3830	7892	7892					0.036684127341459316
FYVNATEDPW	10	Unmodified	_FYVNATEDPW_					0	0	0		ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant	ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant	ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	414.76165771484375	3	414.520628	1240.54005	0.69961	0.00029	2.8406	0.0011775	3.5402	0.0014675	414.521641481662	83.435	0.27098	83.435	83.279	83.55	0					13	8	2	0	0	0	0.31747	1	20531	20531		3.0723	0.98626	1	69996			5702	7333	3801	3831	7893	7893					-0.07059472490186636
FYVNVIVIF	9	Unmodified	_FYVNVIVIF_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1;TAS2R1|p.I62T|1|0.47|ENSG00000169777|chr5:9629848-9629848|A/G|missense_variant	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.8056030273438	2	557.320786	1112.62702	0.49747	0.00027725	-0.55478	-0.00030919	-0.057314	-3.1942E-05	557.3203251563593	71.465	0.45733	71.465	71.269	71.726	0					22	15	2	0	0	0	0.19241	2	16872	16872;16923		19.439	6.9074	1	87423			5703	4356	3802	3832	7894;7895	7894					0.07520978522165933
FYVNVIVIF	9	Unmodified	_FYVNVIVIF_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1;TAS2R1|p.I62T|1|0.47|ENSG00000169777|chr5:9629848-9629848|A/G|missense_variant	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8048095703125	2	557.320786	1112.62702	0.5786	0.00032246	-0.38042	-0.00021202	0.19818	0.00011045	557.3203891004651	71.387	0.39183	71.446	71.26	71.652	0.058578					23	13	3	0	0	0	0.19241	1	16680	16680		19.439	1.304	1	103430			5704	4356	3802	3832	7896	7896					0.07520978522165933
FYVNVKEQF	9	Unmodified	_FYVNVKEQF_					0	0	0		ENST00000506535.1_1_4:185619454-185631498:-|nuORF;nc|ENSG00000151725|Q71F23-2|CENPU;nc|ENSG00000151725|Q71F23-3|CENPU;ENSG00000151725|ENST00000281453|CENPU	ENST00000506535.1_1_4:185619454-185631498:-|nuORF	ENST00000506535.1_1_4:185619454-185631498:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.30126953125	2	587.300581	1172.58661	0.70376	0.00041332	0.10882	6.3909E-05	0.81258	0.00047723	587.3011004373782	57.351	0.34167	57.42	57.265	57.606	0.068371					25	13	3	0	0	0	0.12214	2	12425	12425;12433		27.629	13.723	1	126940			5705	3471	3803	3833	7897;7898	7897					0.007220121317459416
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3475341796875	2	641.347532	1280.68051	-0.090663	-5.8146E-05	0.43823	0.00028105	0.34756	0.00022291	641.3476525960381	72.22	0.77988	72.22	72.019	72.799	0					71	26	4	0	0	0	0.17416	4	17068	17068;17119;17169;17201		34.222	26.066	1	669500			5706	3334	3804	3834	7899;7900;7901;7902	7899					0.05139731234021383
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.34765625	2	641.347532	1280.68051	0.067764	4.346E-05	0.51733	0.00033179	0.58509	0.00037525	641.3475840039741	72.151	0.88943	72.207	71.95	72.84	0.055939					86	30	4	0	0	0	0.20498	3	16881	16881;16931;16987		29.437	20.692	1	594070			5707	3334	3804	3834	7903;7904;7905	7903					0.05139731234021383
FYVRGLFSF	9	Unmodified	_FYVRGLFSF_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3005981445312	2	568.300384	1134.58622	0.27705	0.00015745	-0.27079	-0.00015389	0.0062649	3.5604E-06	568.3000566223493	79.003	1.2839	79.003	78.705	79.989	0					116	44	4	0	0	0	0.0040275	1	19150	19150		103.35	61.259	1	1878200			5708	2442	3805	3835	7906	7906					0.024306372025876044
FYVRGLFSF	9	Unmodified	_FYVRGLFSF_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3008422851562	2	568.300384	1134.58622	0.2519	0.00014315	-0.29718	-0.00016889	-0.045286	-2.5736E-05	568.3001134753757	78.947	1.4047	78.977	78.759	80.164	0.030159					124	49	5	0	0	0	0.0043658	1	18975	18975		96.111	56.154	1	1997100			5709	2442	3805	3835	7907	7907					0.024306372025876044
FYVRGLFSFF	10	Unmodified	_FYVRGLFSFF_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8504638671875	2	641.834591	1281.65463	0.070591	4.5308E-05	-2.5342	-0.0016265	-2.4636	-0.0015812	642.3343855297379	71.949	0.28822	72.005	71.95	72.239	0.055939					14	9	2	0	0	0	0.43972	1	16894	16894		6.7232	0.99131	1	93008			5710	2442	3806	3836	7908	7908					0.025068817824148937
FYVRITTF	8	Unmodified	_FYVRITTF_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2706298828125	2	523.78711	1045.55967	0.51461	0.00026955	0.10243	5.365E-05	0.61704	0.0003232	523.7870835946958	70.307	0.27702	70.307	70.114	70.391	0					12	10	2	0	0	0	0.45077	1	16474	16474		19.439	2.4967	1	74596	+		5711	10802	3807	3837	7909	7909					0.03870948311214306
FYVTNVLEI	9	Unmodified	_FYVTNVLEI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.74072265625	2	549.297507	1096.58046	0.29314	0.00016102	-0.094204	-5.1746E-05	0.19894	0.00010927	549.2972739008225	86.779	0.2286	86.807	86.63	86.859	0.027573					13	10	2	0	0	0	0.14884	1	21367	21367		29.841	7.1043	1	180100			5712	2364	3808	3838	7910	7910					0.03603493900232024
FYYIMPPLF	9	Unmodified	_FYYIMPPLF_					0	0	0		OR14C36|p.S277Y|1|0.22|ENSG00000177174|chr1:248349604-248349604|C/A|missense_variant	OR14C36|p.S277Y|1|0.22|ENSG00000177174|chr1:248349604-248349604|C/A|missense_variant	OR14C36|p.S277Y|1|0.22|ENSG00000177174|chr1:248349604-248349604|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3191528320312	2	595.801371	1189.58819	0.44135	0.00026296	-1.4909	-0.0008883	-1.0496	-0.00062534	595.8010422606715	70.076	0.77475	70.076	69.643	70.418	0					57	28	4	0	0	0	0.2796	1	16443	16443		9.3474	1.4373	1	384830			5713	7653	3809	3839	7911	7911					0.0009792989615107217
FYYIMPPLF	9	Unmodified	_FYYIMPPLF_					0	0	0		OR14C36|p.S277Y|1|0.22|ENSG00000177174|chr1:248349604-248349604|C/A|missense_variant	OR14C36|p.S277Y|1|0.22|ENSG00000177174|chr1:248349604-248349604|C/A|missense_variant	OR14C36|p.S277Y|1|0.22|ENSG00000177174|chr1:248349604-248349604|C/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	595.801371	1189.58819	0.26241	0.00015634	-1.1571	-0.00068937	-0.89465	-0.00053303	595.8007576353023	70.031	0.50443	70.091	69.888	70.392	0.060562	0.007765	0.00016976	NaN	9.3474	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308070			5714	7653	3809	3839							0.0009792989615107217
GAAQDGDTHPS	11	Unmodified	_GAAQDGDTHPS_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2227783203125	2	528.223059	1054.43157	-0.10837	-5.7243E-05	0.48635	0.0002569	0.37798	0.00019966	528.2231084490152	30.21	0.39011	30.286	30.143	30.533	0.075403					36	23	3	0	0	0	0.41422	1	4239	4239		1.0715	0.27783	1	22680			5715	326	3810	3840	7912	7912					-0.09347263740619383
GADPSTVEM	9	Unmodified	_GADPSTVEM_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.2144470214844	2	453.6973	905.380048	-0.31862	-0.00014456	-0.087311	-3.9613E-05	-0.40593	-0.00018417	453.69715102098587	42.531	0.27201	42.621	42.431	42.703	0.089764					15	9	2	0	0	0	0.27332	1	7899	7899		10.074	0.6908	1	25407			5716	1075	3811	3841	7913	7913					-0.07642723758863212
GAEITNYVI	9	Unmodified	_GAEITNYVI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7924499511719	2	490.258382	978.502212	0.34334	0.00016833	0.18465	9.0528E-05	0.528	0.00025886	490.25831471831447	68.112	0.5566	68.112	67.973	68.53	0					36	19	3	0	0	0	0.22912	1	15844	15844		18.146	2.2992	1	160790			5717	3593	3812	3842	7914	7914					0.012100613149868877
GAGHYYQI	8	Unmodified	_GAGHYYQI_					0	0	0			REV__ENST00000389629.8_1_15:41773055-41773298:+|nuORF	REV__ENST00000389629.8_1_15:41773055-41773298:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.71685791015625	2	454.716685	907.418816	0.4749	0.00021594	0.76894	0.00034965	1.2438	0.00056559	454.71693344740686	85.9	0.3688	85.9	85.686	86.055	0					24	14	2	0	0	0	0.54081	1	21256	21256		0.79363	0	1	97380	+		5718	11686	3813	3843	7915	7915					-0.03859630342185483
GAGHYYQI	8	Unmodified	_GAGHYYQI_					0	0	0			REV__ENST00000389629.8_1_15:41773055-41773298:+|nuORF	REV__ENST00000389629.8_1_15:41773055-41773298:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	454.716685	907.418816	0.4749	0.00021594	0.76894	0.00034965	1.2438	0.00056559	454.71693344740686	85.9	0.3688	85.9	85.686	86.055	0	0.016404	4.879E-05	NaN	0.79363	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97380	+		5719	11686	3813	3843							-0.03859630342185483
GAGPGADLGAE	11	Unmodified	_GAGPGADLGAE_					0	0	0		ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.7142639160156	2	457.714339	913.414125	-0.22497	-0.00010297	0.027303	1.2497E-05	-0.19767	-9.0476E-05	457.7142849993032	27.828	0.54692	27.91	27.709	28.256	0.082134					74	32	3	0	0	0	0.39569	1	3576	3576		5.2969	0.39987	1	60552			5720	2498	3814	3844	7916	7916					-0.04604559275628617
GANGKCDR	8	Unmodified	_GANGKCDR_					0	0	0			REV__ENST00000485083.5_1_1:228333617-228333707:+|nuORF	REV__ENST00000485083.5_1_1:228333617-228333707:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.6908264160156	2	410.690144	819.365735	1.0042	0.00041243	1.288	0.00052897	2.2922	0.0009414	410.6906698657501	81.307	0.54961	81.307	81.023	81.573	0					31	18	3	0	0	0	0.5411	1	19833	19833		0.6015	0.6015	1	124050	+		5721	12116	3815	3845	7917	7917					-0.05117331396513691
GANGPAPRER	10	Unmodified	_GANGPAPRER_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.272216796875	2	512.767771	1023.52099	0.27534	0.00014119	1.8366	0.00094175	2.112	0.0010829	512.7686225929161	37.195	1.0005	37.195	36.611	37.612	0					59	23	4	0	0	0	0.46827	1	6323	6323		1.3295	0.63916	1	164100	+		5722	10273	3816	3846	7918	7918					0.010170357294214227
GAPAPGVPF	9	Unmodified	_GAPAPGVPF_					0	0	0			REV__nc|ENSG00000004777|O14559-10|ARHGAP33	REV__nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.7182312011719	2	406.718696	811.422839	-0.30718	-0.00012494	0.0067237	2.7347E-06	-0.30046	-0.0001222	406.71838728027126	41.377	0.86477	41.377	41.103	41.968	0					60	31	4	0	0	0	0.23437	1	7714	7714		14.582	8.8213	1	120880	+		5723	7929	3817	3847	7919	7919					0.009584591515135799
GAPAPGVPF	9	Unmodified	_GAPAPGVPF_					0	0	0			REV__nc|ENSG00000004777|O14559-10|ARHGAP33	REV__nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.7181091308594	2	406.718696	811.422839	-0.5372	-0.00021849	-0.25511	-0.00010376	-0.7923	-0.00032224	406.71855825542235	41.28	0.45608	41.37	41.211	41.667	0.089767					31	17	3	0	0	0	0.23437	1	7575	7575		14.582	5.2343	1	100170	+		5724	7929	3817	3847	7920	7920					0.009584591515135799
GAPAPGVPF	9	Unmodified	_GAPAPGVPF_					0	0	0			REV__nc|ENSG00000004777|O14559-10|ARHGAP33	REV__nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	406.718696	811.422839	-0.30718	-0.00012494	0.0067237	2.7347E-06	-0.30046	-0.0001222	406.71838728027126	41.377	0.86477	41.377	41.103	41.968	0	0.0038274	0.00018817	NaN	14.582	60	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120880	+		5725	7929	3817	3847							0.009584591515135799
GAPAPGVPF	9	Unmodified	_GAPAPGVPF_					0	0	0			REV__nc|ENSG00000004777|O14559-10|ARHGAP33	REV__nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	406.718696	811.422839	-0.5372	-0.00021849	-0.25511	-0.00010376	-0.7923	-0.00032224	406.71855825542235	41.28	0.45608	41.37	41.211	41.667	0.089767	-0.0038274	-2.4816E-05	NaN	14.582	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100170	+		5726	7929	3817	3847							0.009584591515135799
GAPGVRQF	8	Unmodified	_GAPGVRQF_					0	0	0			REV__nc|ENSG00000117385|Q32P28-3|P3H1	REV__nc|ENSG00000117385|Q32P28-3|P3H1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5028381347656	2	416.22722	830.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.886	1	67.886	67.386	68.386	0								0	0	0	0.38822	1	15765	15765		2.8892	0.31174	1		+		5727	12779	3818	3848	7921	7921					0.017883797573290394
GARLQELFN	9	Unmodified	_GARLQELFN_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2825927734375	2	524.282723	1046.55089	-0.21077	-0.0001105	0.080009	4.1947E-05	-0.13076	-6.8556E-05	524.2826627614079	27.118	0.43615	27.204	27.029	27.465	0.086699					85	29	4	0	0	0	0.16392	1	3332	3332		22.736	3.4793	1	264430	+		5728	9037	3819	3849	7922	7922					0.02947974674748366
GARRRGLVF	9	Unmodified	_GARRRGLVF_					0	0	0			REV__ENST00000435475.5_1_1:109419917-109420064:+|nuORF	REV__ENST00000435475.5_1_1:109419917-109420064:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3141479492188	2	516.314692	1030.61483	0.48131	0.00024851	-0.69206	-0.00035732	-0.21075	-0.00010881	516.3141793202999	93.538	0.88896	93.576	93.313	94.202	0.037369					94	40	4	0	0	0	0.3182	1	23551	23551		4.3292	1.7518	1	1708100	+		5729	11861	3820	3850	7923	7923					0.10074799622361752
GASYLTFLF	9	Unmodified	_GASYLTFLF_					0	0	0			REV__nc|ENSG00000211800|A0A0B4J274|TRAV20	REV__nc|ENSG00000211800|A0A0B4J274|TRAV20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.26141357421875	2	509.765843	1017.51713	0.15255	7.7767E-05	-2.8088	-0.0014318	-2.6562	-0.0013541	509.76441895024584	52.171	1.3538	52.171	51.682	53.036	0					75	47	3	0	0	0	0.25579	1	11211	11211		4.3292	0.73274	1	194480	+		5730	12882	3821	3851	7924	7924					0.009075531829921601
GASYLTFLF	9	Unmodified	_GASYLTFLF_					0	0	0			REV__nc|ENSG00000211800|A0A0B4J274|TRAV20	REV__nc|ENSG00000211800|A0A0B4J274|TRAV20	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.765843	1017.51713	0.24693	0.00012588	-3.6492	-0.0018602	-3.4023	-0.0017344	509.76393540899323	52.157	0.58302	52.224	51.938	52.521	0.067173	0.026474	-0.00013183	NaN	4.3292	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150770	+		5731	12882	3821	3851							0.009075531829921601
GAYHRLQL	8	Unmodified	_GAYHRLQL_					0	0	0		ENST00000263269.3_1_19:48917790-48922905:+|nuORF	ENST00000263269.3_1_19:48917790-48922905:+|nuORF	ENST00000263269.3_1_19:48917790-48922905:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.26580810546875	2	479.266876	956.519199	-0.21053	-0.0001009	-1.1752	-0.00056326	-1.3858	-0.00066416	479.2663534260409	34.293	0.39774	34.369	34.194	34.592	0.076244					20	15	2	0	0	0	0.54081	1	5500	5500		0.79363	0	1	31230			5732	5877	3822	3852	7925	7925					0.03920026711466562
GAYQLKANS	9	Unmodified	_GAYQLKANS_					0	0	0			REV__nc|ENSG00000130226|P42658-2|DPP6	REV__nc|ENSG00000130226|P42658-2|DPP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.2378234863281	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.754	1	51.754	51.254	52.254	0								0	0	0	0.27613	1	10846	10846		3.9444	0.3479	1		+		5733	9050	3823	3853	7926	7926					0.004923103750456903
GCCRTEAP	8	Unmodified	_GCCRTEAP_					0	0	0			REV__ENST00000482346.1_1_2:233347818-233348165:-|nuORF	REV__ENST00000482346.1_1_2:233347818-233348165:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.67340087890625	2	418.673105	835.331658	0.035637	1.492E-05	0.82487	0.00034535	0.8605	0.00036027	418.67339803147235	28.166	0.65227	28.166	27.876	28.529	0					81	35	4	0	0	0	0.53423	1	3742	3742		5.2307	0	1	258870	+		5734	12100	3824	3854	7927	7927					-0.0925949587976902
GCCRTEAP	8	Unmodified	_GCCRTEAP_					0	0	0			REV__ENST00000482346.1_1_2:233347818-233348165:-|nuORF	REV__ENST00000482346.1_1_2:233347818-233348165:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	418.673105	835.331658	-0.29489	-0.00012346	1.1863	0.00049669	0.89144	0.00037322	418.6735649552693	27.959	0.54341	28.041	27.798	28.341	0.082132	-0.062505	0.00012269	NaN	5.2307	87	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244620	+		5735	12100	3824	3854							-0.0925949587976902
GDDFTAVF	8	Unmodified	_GDDFTAVF_					0	0	0			REV__tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	REV__tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.87261962890625	2	436.195251	870.375948	0.5962	0.00026006	-0.77845	-0.00033956	-0.18225	-7.9496E-05	436.1947713589746	53.769	0.58884	53.769	53.575	54.164	0					44	20	3	0	0	0	0.3576	1	11409	11409		8.5933	2.8329	1	265020	+		5736	13099	3825	3855	7928	7928					-0.06442445190270973
GDDFTAVF	8	Unmodified	_GDDFTAVF_					0	0	0			REV__tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	REV__tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.8729553222656	2	436.195251	870.375948	0.32269	0.00014076	-0.31973	-0.00013947	0.0029568	1.2897E-06	436.1948930954298	53.761	0.58024	53.826	53.578	54.158	0.065426					50	23	3	0	0	0	0.3576	1	11261	11261		8.5933	2.2392	1	237960	+		5737	13099	3825	3855	7929	7929					-0.06442445190270973
GDEHCSCF	8	Unmodified	_GDEHCSCF_					0	0	0			REV__ENST00000495294.1_1_X:2825314-2825683:-|nuORF	REV__ENST00000495294.1_1_X:2825314-2825683:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.1484069824219	2	449.14692	896.279288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.964	1	49.041	48.541	49.541	0.076607								0	0	0	0.38822	1	9868	9868		0.79363	0	1		+		5738	7947	3826	3856	7930	7930					-0.1730007901337558
GDFISYCF	8	Unmodified	_GDFISYCF_					0	0	0		nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-2|FAT4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.19873046875	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.972	1	36.051	35.551	36.551	0.078827								0	0	0	0.38822	1	5959	5959		5.2307	0	1				5739	7581	3827	3857	7931	7931					-0.09277214545318202
GDGWTRALL	9	Unmodified	_GDGWTRALL_					0	0	0			REV__ENST00000610134.1_1_2:73340392-73340617:+|nuORF	REV__ENST00000610134.1_1_2:73340392-73340617:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.763916015625	2	494.764166	987.513779	0.16565	8.1957E-05	-0.0050044	-2.476E-06	0.16065	7.9481E-05	494.76410991699703	34.295	1.8183	34.295	33.771	35.589	0					178	68	4	0	0	0	0.27929	1	5741	5741		9.3831	0.035688	1	309050	+		5740	12647	3828	3858	7932	7932					0.019523031289850223
GDPLHAWCSMS	11	Unmodified	_GDPLHAWCSMS_					0	0	0			REV__SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|57|2|anti-sense	REV__SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|57|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3140258789062	2	602.249708	1202.48486	0.55527	0.00033441	2.5835	0.0015559	3.1388	0.0018904	602.2506748071851	78.533	0.30965	78.563	78.428	78.738	0.030159					13	10	2	0	0	0	0.31095	1	18818	18818		1.1933	0	1	76502	+		5741	13009	3829	3859	7933	7933					-0.10827925553962814
GDPSLYFQKTF	11	Unmodified	_GDPSLYFQKTF_					0	0	0		ENSG00000135828|ENST00000367559|RNASEL	ENSG00000135828|ENST00000367559|RNASEL	ENSG00000135828|ENST00000367559|RNASEL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8823547363281	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.444	1	66.511	66.011	67.011	0.066872								0	0	0	0.33835	1	15178	15178		1.3296	0.11481	1				5742	2747	3830	3860	7934	7934					-0.009546375306854316
GDQRQELAAF	10	Unmodified	_GDQRQELAAF_					0	0	0		SH3TC2|p.V1167A|1|0.17|ENSG00000169247|chr5:149007056-149007056|A/G|missense_variant	SH3TC2|p.V1167A|1|0.17|ENSG00000169247|chr5:149007056-149007056|A/G|missense_variant	SH3TC2|p.V1167A|1|0.17|ENSG00000169247|chr5:149007056-149007056|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7806396484375	2	567.780544	1133.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.04	1	116.05	115.55	116.55	0.013062								0	0	0	0.33877	1	29470	29470		1.6526	0.32309	1				5743	13362	3831	3861	7935	7935					-0.014895345388140413
GDQSQAWYMD	10	Unmodified	_GDQSQAWYMD_					0	0	0			REV__ENSG00000139174|ENST00000345127|PRICKLE1	REV__ENSG00000139174|ENST00000345127|PRICKLE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.82672119140625	3	400.825722	1199.45534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.382	1	22.484	21.984	22.984	0.10178								0	0	0	0.33979	1	2009	2009		0.15932	0	1		+		5744	9335	3832	3862	7936	7936					-0.13641166298452845
GDTWQSVVSW	10	Unmodified	_GDTWQSVVSW_					0	0	0			REV__ENSG00000171596|ENST00000305141|NMUR1	REV__ENSG00000171596|ENST00000305141|NMUR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7698364257812	2	582.769645	1163.52474	0.45407	0.00026462	-0.66815	-0.00038938	-0.21408	-0.00012476	582.7692020633053	56.15	2.4349	56.15	55.782	58.217	0					304	86	5	0	0	0	0.16124	6	12151	12151;12379;12434;12579;12618;12743		38.176	32.786	1	17527000	+		5745	10266	3833	3863	7937;7938;7939;7940;7941;7942	7937					-0.05048339287372983
GDTWWAEL	8	Unmodified	_GDTWWAEL_					0	0	0		ENST00000416600.6_1_20:3846925-3847768:+|nuORF	ENST00000416600.6_1_20:3846925-3847768:+|nuORF	ENST00000416600.6_1_20:3846925-3847768:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7327575683594	2	489.2218	976.429047	-0.12722	-6.224E-05	-0.15018	-7.3471E-05	-0.2774	-0.00013571	489.2217360494581	33.045	0.33487	33.119	32.992	33.327	0.074322					21	13	2	0	0	0	0.3576	1	5137	5137		2.5775	0	1	22089			5746	6428	3834	3864	7943	7943					-0.0601106740762134
GDVKDKFEA	9	Unmodified	_GDVKDKFEA_					0	0	0		nc|ENSG00000162614|Q0ZGT2-3|NEXN;nc|ENSG00000162614|Q0ZGT2-2|NEXN;ENSG00000162614|ENST00000334785|NEXN	nc|ENSG00000162614|Q0ZGT2-3|NEXN	nc|ENSG00000162614|Q0ZGT2-3|NEXN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.1036071777344	2	504.753464	1007.49238	-0.15027	-7.585E-05	0.35602	0.0001797	0.20575	0.00010385	504.7535958306282	43.009	0.46117	43.099	42.934	43.395	0.089767					26	16	2	0	0	0	0.25746	1	8137	8137		3.2813	0.97858	1	40295			5747	3841	3835	3865	7944	7944					-0.011071266903741162
GEAAWNNMQVF	11	Unmodified	_GEAAWNNMQVF_					0	0	0		ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.7842407226562	2	633.78223	1265.54991	0.28359	0.00017974	3.2314	0.002048	3.515	0.0022278	633.7838100499474	67.737	0.95593	67.737	67.368	68.324	0					55	35	2	0	0	0	0.40796	1	15775	15775		2.4985	0.65425	1	163230			5748	6954	3836	3866	7945	7945					-0.07224607756484147
GEAAWNNMQVF	11	Unmodified	_GEAAWNNMQVF_					0	0	0		ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.7177734375	2	633.78223	1265.54991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.946	1	65.946	65.446	66.446	0								0	0	0	0.31149	1	15174	15174		10.8	0.72558	1				5749	6954	3836	3866	7946	7946					-0.07224607756484147
GEAAWNNMQVF	11	Unmodified	_GEAAWNNMQVF_					0	0	0		ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.2862548828125	2	633.78223	1265.54991	0.51508	0.00032645	2.643	0.0016751	3.1581	0.0020016	634.2860319738485	65.817	0.49488	65.884	65.734	66.229	0.066872					24	18	2	0	0	0	0.36299	2	15007	15007;15020		10.8	4.0763	1	163660			5750	6954	3836	3866	7947;7948	7947					-0.07224607756484147
GEAAWNNMQVF	11	Unmodified	_GEAAWNNMQVF_					0	0	0		ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.7828979492188	2	633.78223	1265.54991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.758	1	67.822	67.322	68.322	0.063507								0	0	0	0.31149	1	15572	15572		10.8	1.4164	1				5751	6954	3836	3866	7949	7949					-0.07224607756484147
GEAITSAAI	9	Unmodified	_GEAITSAAI_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22802734375	2	416.724175	831.433798	0.06133	2.5558E-05	-0.53688	-0.00022373	-0.47555	-0.00019817	416.7241047476324	38.957	0.45494	39.044	38.885	39.339	0.08688					32	17	3	0	0	0	0.25644	1	6838	6838		3.9444	0	1	86225			5752	2811	3837	3867	7950	7950					0.011338167351482298
GEAMLMIEC	9	Unmodified	_GEAMLMIEC_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2784118652344	2	498.713581	995.41261	0.32725	0.0001632	0.71365	0.00035591	1.0409	0.00051911	498.7139949661376	51.181	0.48232	51.251	51.021	51.503	0.069874					33	18	2	0	0	0	0.25051	1	10496	10496		7.9102	3.1541	1	113680	+		5753	10747	3838	3868	7951	7951					-0.08527975951892586
GEASRLAHY	9	Unmodified	_GEASRLAHY_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000158373|ENST00000377777|H2BC5;nc|ENSG00000220323|Q6DRA6|H2BC19P;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000274290|ENST00000614097|H2BC6;nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2514343261719	2	502.251423	1002.48829	-0.2255	-0.00011326	0.33973	0.00017063	0.11422	5.7368E-05	502.2515414491127	25.543	0.78705	25.543	25.352	26.139	0					126	60	4	0	0	0	0.2359	1	2998	2998		14.405	7.6822	1	178230			5754	7590	3839	3869	7952	7952					-0.01285171393442397
GEASRLAHY	9	Unmodified	_GEASRLAHY_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000158373|ENST00000377777|H2BC5;nc|ENSG00000220323|Q6DRA6|H2BC19P;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000274290|ENST00000614097|H2BC6;nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2514343261719	2	502.251423	1002.48829	-0.0714	-3.5861E-05	0.2516	0.00012636	0.1802	9.0503E-05	502.2515008455127	25.436	0.72118	25.532	25.313	26.035	0.096075					127	59	4	0	0	0	0.14444	2	2823	2823;2859		24.991	12.459	1	216810			5755	7590	3839	3869	7953;7954	7953					-0.01285171393442397
GEAVVNRVF	9	Unmodified	_GEAVVNRVF_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.77252197265625	2	495.771991	989.529429	0.094044	4.6624E-05	0.55961	0.00027744	0.65365	0.00032406	495.77217855783994	45.96	0.50917	45.96	45.782	46.291	0					40	17	3	0	0	0	0.020768	1	9076	9076		57.722	33.701	1	308710			5756	5642	3840	3870	7955	7955					0.03424589646044751
GEAVVNRVF	9	Unmodified	_GEAVVNRVF_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7728576660156	2	495.771991	989.529429	0.17332	8.5926E-05	0.37507	0.00018595	0.54839	0.00027188	495.7720910029549	45.871	0.54808	45.956	45.788	46.336	0.085617					46	20	3	0	0	0	0.029291	1	8915	8915		51.63	27.609	1	277950			5757	5642	3840	3870	7956	7956					0.03424589646044751
GEDKEVIQ	8	Unmodified	_GEDKEVIQ_					0	0	0			REV__ENST00000475405.2_1_2:74274397-74300767:+|nuORF	REV__ENST00000475405.2_1_2:74274397-74300767:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.23236083984375	2	459.232364	916.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.554	1	33.628	33.128	34.128	0.074322								0	0	0	0.38822	1	5233	5233		2.0598	0	1		+		5758	10740	3841	3871	7957	7957					-0.011391020987502998
GEDLLFYL	8	Unmodified	_GEDLLFYL_					0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2354431152344	2	485.250026	968.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.932	1	39.932	39.432	40.432	0								0	0	0	0.38822	1	7273	7273		5.2307	0.47466	1				5759	1711	3842	3872	7958	7958					-4.395709538584924E-06
GEDLRVTQI	9	Unmodified	_GEDLRVTQI_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7618408203125	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.499	1	42.589	42.089	43.089	0.089764								0	0	0	0.24643	1	7920	7920		10.074	0.6908	1				5760	288	3843	3873	7959	7959					0.03188251092274186
GEDNRPGMR	9	Unmodified	_GEDNRPGMR_					0	0	0		nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	nc|ENSG00000128585|Q9UL63-2|MKLN1	nc|ENSG00000128585|Q9UL63-2|MKLN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2197265625	2	516.23799	1030.46143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.741	1	42.741	42.241	43.241	0								0	0	0	0.24643	1	8121	8121		10.074	1.9184	1				5761	2401	3844	3874	7960	7960					-0.05258603276251961
GEDWNNWW	8	Unmodified	_GEDWNNWW_					0	0	0		ENST00000460874.6_1_9:21802906-21815460:+|nuORF	ENST00000460874.6_1_9:21802906-21815460:+|nuORF	ENST00000460874.6_1_9:21802906-21815460:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7195434570312	2	553.719956	1105.42536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.305	1	42.305	41.805	42.805	0								0	0	0	0.38822	1	7989	7989		0.69038	0.088878	1				5762	6608	3845	3875	7961	7961					-0.12313737181466422
GEDWNNWW	8	Unmodified	_GEDWNNWW_					0	0	0		ENST00000460874.6_1_9:21802906-21815460:+|nuORF	ENST00000460874.6_1_9:21802906-21815460:+|nuORF	ENST00000460874.6_1_9:21802906-21815460:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7200317382812	2	553.719956	1105.42536	-0.080454	-4.4549E-05	-0.042241	-2.3389E-05	-0.12269	-6.7939E-05	553.719866932333	42.225	0.40836	42.314	42.138	42.547	0.089764					22	14	2	0	0	0	0.54097	2	7817	7817;7875		0.69038	0	1	49261			5763	6608	3845	3875	7962;7963	7962					-0.12313737181466422
GEEGPSAAP	9	Unmodified	_GEEGPSAAP_					0	0	0		ENST00000500447.1_1_11:567068-567254:-|nuORF	ENST00000500447.1_1_11:567068-567254:-|nuORF	ENST00000500447.1_1_11:567068-567254:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.68243408203125	2	407.682507	813.350462	0.055337	2.256E-05	-0.17378	-7.0847E-05	-0.11844	-4.8287E-05	407.6824804951645	28.131	1.4768	28.131	27.859	29.335	0					179	80	5	0	0	0	0.11022	2	3823	3699;3823		30.225	0	1	2276900			5764	6861	3846	3876	7964;7965	7965					-0.06367919712715775
GEEHLTVLV	9	Unmodified	_GEEHLTVLV_					0	0	0		ENST00000489193.1_1_3:86062505-86063063:+|nuORF	ENST00000489193.1_1_3:86062505-86063063:+|nuORF	ENST00000489193.1_1_3:86062505-86063063:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.771728515625	2	498.771657	995.528761	0.49997	0.00024937	-0.018222	-9.0888E-06	0.48175	0.00024028	498.77162322428586	47.369	0.51966	47.452	47.269	47.788	0.083096					52	20	4	0	0	0	0.18479	1	9377	9377		26.884	3.7352	1	322270			5765	6798	3847	3877	7966	7966					0.03081750206331435
GEEKQFLEVW	10	Unmodified	_GEEKQFLEVW_					0	0	0		ENST00000447541.5_1_3:49713127-49713830:+|nuORF;ENST00000463616.1_1_3:49711921-49713416:+|nuORF;ENST00000463995.5_1_3:49713127-49713790:+|nuORF;APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant;ENSG00000164062|ENST00000296456|APEH	ENST00000447541.5_1_3:49713127-49713830:+|nuORF	ENST00000447541.5_1_3:49713127-49713830:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.8150024414062	2	632.814053	1263.61355	0.43458	0.00027501	0.91265	0.00057754	1.3472	0.00085254	632.8146179102355	98.181	0.62771	98.181	98.009	98.637	0					68	33	3	0	0	0	0.43214	1	25002	25002		8.1555	1.9497	1	402870			5766	42	3848	3878	7967	7967					-0.007709240476970081
GEEQLRSRL	9	Unmodified	_GEEQLRSRL_					0	0	0			REV__nc|ENSG00000177125|Q8NCN2|ZBTB34	REV__nc|ENSG00000177125|Q8NCN2|ZBTB34	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7424926757812	2	544.296362	1086.57817	-0.16849	-9.1707E-05	0.80327	0.00043722	0.63478	0.00034551	544.2961086120258	25.94	0.2034	25.94	25.836	26.039	0					18	15	2	0	0	0	0.25644	1	3122	3122		3.9444	0	1	14707	+		5767	10424	3849	3879	7968	7968					0.03834458215169434
GEFYGHVP	8	Unmodified	_GEFYGHVP_					0	0	0			REV__nc|ENSG00000123843|P20851-2|C4BPB	REV__nc|ENSG00000123843|P20851-2|C4BPB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2099609375	2	453.211235	904.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.551	1	83.573	83.073	84.073	0.021744								0	0	0	0.38822	1	20383	20383		0.79363	0	1		+		5768	8938	3850	3880	7969	7969					-0.048110327164636146
GEGPCPTF	8	Unmodified	_GEGPCPTF_					0	0	0		ENST00000587501.1_1_17:73789806-73789887:+|nuORF	ENST00000587501.1_1_17:73789806-73789887:+|nuORF	ENST00000587501.1_1_17:73789806-73789887:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1700439453125	2	404.170721	806.32689	0.29649	0.00011983	-2.7269	-0.0011021	-2.4304	-0.00098231	404.1699349951087	71.939	3.9579	71.939	71.669	75.627	0					297	144	5	0	0	0	0.53817	1	16997	16997		2.5775	0	1	15975000			5769	7245	3851	3881	7970	7970					-0.08402056750890097
GEGQVPLKPF	10	Unmodified	_GEGQVPLKPF_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|6|1|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|6|1|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|6|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.8602905273438	2	536.295299	1070.57605	0.77553	0.00041591	-0.13164	-7.0595E-05	0.64389	0.00034532	536.2952126899497	55.093	0.66839	55.159	54.927	55.595	0.065128					50	25	3	0	0	0	0.31794	1	11845	11845		3.5965	3.5965	1	351010			5770	7348	3852	3882	7971	7971					0.04358029477339187
GEGQVPLKPF	10	Unmodified	_GEGQVPLKPF_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|6|1|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|6|1|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|6|1|sense	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	536.295299	1070.57605	0.60647	0.00032525	0.1408	7.551E-05	0.74727	0.00040076	536.2953006495123	55.058	0.7685	55.058	54.894	55.662	0	-0.050138	0.00011964	NaN	3.5965	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425970			5771	7348	3852	3882							0.04358029477339187
GEILRTEQW	9	Unmodified	_GEILRTEQW_					0	0	0		ENST00000596424.1_1_19:50360315-50362048:+|nuORF;nc|ENSG00000104960|Q86YD1-3|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1	ENST00000596424.1_1_19:50360315-50362048:+|nuORF	ENST00000596424.1_1_19:50360315-50362048:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2918701171875	2	566.293288	1130.57202	0.19118	0.00010827	-0.045676	-2.5866E-05	0.14551	8.24E-05	566.2928372542488	49.917	0.19857	49.99	49.927	50.125	0.07312					11	6	2	0	0	0	0.2359	1	10172	10172		14.405	5.0223	1	75329			5772	1445	3853	3883	7972	7972					0.011959399835859585
GEIQEIVKT	9	Unmodified	_GEIQEIVKT_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7848815917969	2	508.784764	1015.55498	-0.16483	-8.386E-05	0.73943	0.00037621	0.57461	0.00029235	508.7852427389169	43.444	0.56534	43.444	43.03	43.595	0					27	19	2	0	0	0	0.2779	1	8333	8333		9.544	2.4423	1	65112			5773	4977	3854	3884	7973	7973					0.04782019377796587
GELAQRLHE	9	Unmodified	_GELAQRLHE_					0	0	0			REV__ENSG00000157933|ENST00000378536|SKI	REV__ENSG00000157933|ENST00000378536|SKI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7770385742188	2	526.777805	1051.54106	-0.097532	-5.1377E-05	0.13436	7.0778E-05	0.036829	1.9401E-05	526.7779034384696	24.496	1.6269	24.592	23.498	25.125	0.096075					219	151	2	0	0	0	0.33978	1	2376	2376		1.4819	0.28856	1	30821	+		5774	9791	3855	3885	7974	7974					0.017347866693853575
GELDQRAL	8	Unmodified	_GELDQRAL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.240234375	2	451.240524	900.466495	-0.25484	-0.00011499	-0.038229	-1.725E-05	-0.29307	-0.00013224	451.2404243775452	40.56	0.39532	40.649	40.458	40.854	0.089645					30	15	3	0	0	0	0.53202	1	7362	7362		6.7232	0	1	79083			5775	1745	3856	3886	7975	7975					0.012280238579933211
GENDRGVSF	9	Unmodified	_GENDRGVSF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7254943847656	2	490.725238	979.435923	0.0086728	4.256E-06	-0.09542	-4.6825E-05	-0.086747	-4.2569E-05	490.72516024522025	34.502	0.39701	34.502	34.337	34.734	0					30	15	3	0	0	0	0.18398	1	5631	5631		20.415	4.5674	1	62241			5776	5550	3857	3887	7976	7976					-0.054617545270275514
GENSAVLHY	9	Unmodified	_GENSAVLHY_					0	0	0		nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD	nc|ENSG00000124299|P12955-3|PEPD	nc|ENSG00000124299|P12955-3|PEPD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2378845214844	2	495.237981	988.461409	0.46231	0.00022895	-0.655	-0.00032438	-0.19269	-9.5427E-05	495.2373344695788	37.887	0.29205	37.887	37.758	38.05	0					14	9	2	0	0	0	0.18364	1	6663	6663		20.454	7.9221	1	31174			5777	2252	3858	3888	7977	7977					-0.03328280004609496
GENSAVLHY	9	Unmodified	_GENSAVLHY_					0	0	0		nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD	nc|ENSG00000124299|P12955-3|PEPD	nc|ENSG00000124299|P12955-3|PEPD	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.237981	988.461409	0.43764	0.00021674	-0.24469	-0.00012118	0.19295	9.5558E-05	495.2375287303549	37.8	0.37814	37.885	37.716	38.094	0.084476	-0.0010223	0.0002091	NaN	20.454	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26973			5778	2252	3858	3888							-0.03328280004609496
GEPHTDAVAL	10	Unmodified	_GEPHTDAVAL_					0	0	0			REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.2516174316406	2	505.251089	1008.48762	0.1016	5.1333E-05	0.69183	0.00034955	0.79343	0.00040088	505.2515061753538	35.694	0.54	35.773	35.569	36.109	0.078827					53	19	4	0	0	0	0.37232	1	5912	5912		14.838	0.93222	1	358080	+		5779	8444	3859	3889	7978	7978					-0.016280108331443444
GERGCIFCRK	10	Unmodified	_GERGCIFCRK_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-4|TUT7	REV__nc|ENSG00000083223|Q5VYS8-4|TUT7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.79052734375	2	584.789335	1167.56412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.916	1	18.916	18.416	19.416	0								0	0	0	0.33892	1	1237	1237		1.4819	0.15237	1		+		5780	8254	3860	3890	7979	7979					-0.012962338091938364
GESSFTYRAY	10	Unmodified	_GESSFTYRAY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.7664184570312	2	590.767103	1179.51965	-0.12424	-7.3395E-05	0.077971	4.6063E-05	-0.046266	-2.7333E-05	590.7669666402408	43.078	0.58065	43.078	42.916	43.497	0					37	19	3	0	0	0	0.18348	2	8243	8197;8243		35.612	26.265	1	124370			5781	2959	3861	3891	7980;7981	7981					-0.06292643150004551
GESSFTYRAY	10	Unmodified	_GESSFTYRAY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.766845703125	2	590.767103	1179.51965	0.017596	1.0395E-05	0.056923	3.3628E-05	0.074519	4.4023E-05	590.7667761100919	43.019	0.59446	43.109	42.887	43.482	0.089764					37	21	3	0	0	0	0.12534	2	8084	8039;8084		42.312	30.818	1	147720			5782	2959	3861	3891	7982;7983	7983					-0.06292643150004551
GESVIGKTY	9	Unmodified	_GESVIGKTY_					0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENST00000401578.2_1_6:80777785-80779717:-|nuORF;nc|ENSG00000275832|Q9P227-2|ARHGAP23;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.6910705566406	2	477.250557	952.486562	-0.20958	-0.00010002	-0.12013	-5.7332E-05	-0.32971	-0.00015735	477.2504531835066	34.711	0.40717	34.711	34.568	34.975	0					24	15	2	0	0	0	0.24819	1	5691	5691		10.8	4.5937	1	28870			5783	5751	3862	3892	7984	7984					0.008417747979365231
GESVIGKTY	9	Unmodified	_GESVIGKTY_					0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENST00000401578.2_1_6:80777785-80779717:-|nuORF;nc|ENSG00000275832|Q9P227-2|ARHGAP23;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2510070800781	2	477.250557	952.486562	-0.18992	-9.0639E-05	0.26298	0.00012551	0.073066	3.4871E-05	477.25073811298404	34.61	0.38812	34.686	34.542	34.931	0.076244					27	17	2	0	0	0	0.32831	1	5572	5572		2.9952	1.151	1	24850			5784	5751	3862	3892	7985	7985					0.008417747979365231
GESVIGKTY	9	Unmodified	_GESVIGKTY_					0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENST00000401578.2_1_6:80777785-80779717:-|nuORF;nc|ENSG00000275832|Q9P227-2|ARHGAP23;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	477.250557	952.486562	-0.18992	-9.0639E-05	0.26298	0.00012551	0.073066	3.4871E-05	477.25073811298404	34.61	0.38812	34.686	34.542	34.931	0.076244	-0.012554	0.0001021	NaN	10.8	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24850			5785	5751	3862	3892							0.008417747979365231
GETRQWEFGA	10	Unmodified	_GETRQWEFGA_					0	0	0			REV__nc|ENSG00000047849|P27816-3|MAP4	REV__nc|ENSG00000047849|P27816-3|MAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7730102539062	2	590.772719	1179.53089	0.098778	5.8356E-05	0.17362	0.00010257	0.2724	0.00016093	590.7728728007079	40.051	1.1925	40.139	39.608	40.8	0.088566					62	44	2	0	0	0	0.46827	1	7243	7243		1.3295	0.72803	1	43976	+		5786	12746	3863	3893	7986	7986					-0.05169821055847024
GFASNREEL	9	Unmodified	_GFASNREEL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2348327636719	2	511.748713	1021.48287	-0.21191	-0.00010845	0.5074	0.00025966	0.29548	0.00015121	511.74890650008047	40.341	0.61309	40.341	40.123	40.736	0					34	21	2	0	0	0	0.25281	1	7376	7376		6.7232	0.96273	1	50003			5787	954	3864	3894	7987	7987					-0.027008949758965173
GFDLHFGIYL	10	Unmodified	_GFDLHFGIYL_					0	0	0		ENST00000369626.7_1_1:113471860-113498806:-|nuORF	ENST00000369626.7_1_1:113471860-113498806:-|nuORF	ENST00000369626.7_1_1:113471860-113498806:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.33740234375	2	591.303124	1180.5917	0.5105	0.00030186	-0.6179	-0.00036537	-0.1074	-6.3504E-05	591.3026710438874	75.151	0.59694	75.151	74.935	75.532	0					56	22	4	0	0	0	0.31456	1	18020	18020		14.838	0.43289	1	1034300			5788	6196	3865	3895	7988	7988					0.008623159943908831
GFDLHFGIYL	10	Unmodified	_GFDLHFGIYL_					0	0	0		ENST00000369626.7_1_1:113471860-113498806:-|nuORF	ENST00000369626.7_1_1:113471860-113498806:-|nuORF	ENST00000369626.7_1_1:113471860-113498806:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.838623046875	2	591.303124	1180.5917	0.46141	0.00027284	-0.58283	-0.00034463	-0.12141	-7.1793E-05	591.3025639823862	75.127	0.65248	75.171	74.967	75.619	0.044037					51	23	3	0	0	0	0.31616	1	17863	17863		10.074	2.7847	1	627230			5789	6196	3865	3895	7989	7989					0.008623159943908831
GFDSIVGLAL	10	Unmodified	_GFDSIVGLAL_					0	0	0		tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1	tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1	tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2763977050781	2	496.276575	990.538597	0.45833	0.00022746	-0.19841	-9.8468E-05	0.25991	0.00012899	496.2764320884329	88.379	1.1301	88.409	88.141	89.271	0.030037					129	45	5	0	0	0	0.38104	1	22085	22085		13.906	0.86358	1	4217000			5790	13742	3866	3896	7990	7990					0.04294938211717181
GFFDGYFLDI	10	Unmodified	_GFFDGYFLDI_					0	0	0			REV__nc|ENSG00000119125|Q9Y2T3-2|GDA	REV__nc|ENSG00000119125|Q9Y2T3-2|GDA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8563842773438	2	597.279315	1192.54408	0.16206	9.6794E-05	0.81067	0.0004842	0.97273	0.00058099	597.2800765933735	88.799	0.16246	88.831	88.772	88.934	0.032257					7	5	2	0	0	0	0.31731	1	21996	21996		3.2813	0.28607	1	35983	+		5791	8849	3867	3897	7991	7991					-0.044493829964721954
GFFGGVIRKM	10	Unmodified	_GFFGGVIRKM_					0	0	0			REV__ENST00000262158.6_1_18:46446894-46447551:-|nuORF	REV__ENST00000262158.6_1_18:46446894-46447551:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.3087768554688	2	556.307687	1110.60082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.218	1	84.218	83.718	84.718	0								0	0	0	0.33341	1	20747	20747		7.9102	0.62092	1		+		5792	11236	3868	3898	7992	7992					0.04994386079033575
GFGFPKCPD	9	Unmodified	_GFGFPKCPD_					0	0	0		ENST00000419837.1_1_3:49045052-49048957:+|nuORF;ENST00000429900.6_1_3:49044938-49048957:+|nuORF	ENST00000419837.1_1_3:49045052-49048957:+|nuORF	ENST00000419837.1_1_3:49045052-49048957:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.2186279296875	2	484.220746	966.426938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.046	1	46.046	45.546	46.546	0								0	0	0	0.2699	1	9119	9119		5.2307	0	1				5793	6443	3869	3899	7993	7993					-0.05761819417080005
GFGKFAEVSI	10	Unmodified	_GFGKFAEVSI_					0	0	0		tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.774658203125	2	527.782025	1053.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.802	1	54.802	54.302	55.302	0								0	0	0	0.15815	1	11777	11777		36.127	2.0246	1				5794	13557	3870	3900	7994	7994					0.024863405860060084
GFGKFAEVSI	10	Unmodified	_GFGKFAEVSI_					0	0	0		tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7735595703125	2	527.782025	1053.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.665	1	54.73	54.23	55.23	0.065128								0	0	0	0.15815	1	11599	11599		36.127	2.0246	1				5795	13557	3870	3900	7995	7995					0.024863405860060084
GFLDNITIST	10	Unmodified	_GFLDNITIST_					0	0	0		ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.330322265625	2	540.782222	1079.54989	0.46875	0.00025349	3.805	0.0020577	4.2737	0.0023112	540.7846664806294	83.958	0.43266	83.98	83.809	84.241	0.021744					31	15	3	0	0	0	0.31747	1	20496	20496		5.7319	1.4026	1	103920			5796	2918	3871	3901	7996	7996					0.013297155151803963
GFLELLVEYF	10	Unmodified	_GFLELLVEYF_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.5536193847656	3	410.553269	1228.63798	0.71866	0.00029505	0.39666	0.00016285	1.1153	0.0004579	410.5533644537416	69.922	1.5048	69.922	69.704	71.208	0					143	54	4	0	0	0	0.42184	1	16408	16408		9.544	2.4423	1	1409700			5797	574	3872	3902	7997	7997					0.03280336105808601
GFLEPPAAL	9	Unmodified	_GFLEPPAAL_					0	0	0		NR6A1|p.S87Afs*39|1|0.39|ENSG00000148200|chr9:124554455-124554455|C/-|frameshift_variant;nc|ENSG00000148200|Q15406-5|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;ENSG00000148200|ENST00000487099|NR6A1	NR6A1|p.S87Afs*39|1|0.39|ENSG00000148200|chr9:124554455-124554455|C/-|frameshift_variant	NR6A1|p.S87Afs*39|1|0.39|ENSG00000148200|chr9:124554455-124554455|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.264404296875	2	457.752736	913.490919	0.38558	0.0001765	0.097018	4.441E-05	0.4826	0.00022091	457.75272273551036	78.277	0.43929	78.277	77.984	78.423	0					21	14	2	0	0	0	0.25051	1	18945	18945		7.9102	2.6795	1	50228			5798	3353	3873	3903	7998	7998					0.030712840115029394
GFLGCFPD	8	Unmodified	_GFLGCFPD_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	428.26165771484375	2	428.188914	854.363275	0.18243	7.8113E-05	-0.51291	-0.00021962	-0.33048	-0.00014151	428.1886886044698	86.298	0.96624	86.323	85.869	86.835	0.025169					61	38	2	0	0	0	0.3576	1	21165	21165		0.79363	0	1	171320			5799	2466	3874	3904	7999	7999					-0.06973179854185219
GFLGCFPD	8	Unmodified	_GFLGCFPD_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	428.188914	854.363275	0.34548	0.00014793	-0.40824	-0.0001748	-0.062754	-2.687E-05	428.18875144246533	86.256	0.98129	86.256	85.849	86.831	0	-0.033413	5.2741E-05	NaN	0.79363	57	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156640			5800	2466	3874	3904							-0.06973179854185219
GFLGGGFIHSF	11	Unmodified	_GFLGGGFIHSF_					0	0	0			REV__ENSG00000069345|ENST00000317089|DNAJA2	REV__ENSG00000069345|ENST00000317089|DNAJA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7846069335938	2	569.787641	1137.56073	-0.051913	-2.9579E-05	-3.4386	-0.0019593	-3.4905	-0.0019888	569.7854883714475	33.14	0.72065	33.215	32.891	33.611	0.074326					44	28	3	0	0	0	0.37533	1	5091	5091		9.3831	0.63772	1	72895	+		5801	8139	3875	3905	8000	8000					-0.0025483731988060754
GFLSFRGALF	10	Unmodified	_GFLSFRGALF_					0	0	0			REV__ENSG00000104331|ENST00000262644|BPNT2	REV__ENSG00000104331|ENST00000262644|BPNT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2967529296875	2	557.805834	1113.59712	0.79374	0.00044275	0.081725	4.5587E-05	0.87546	0.00048834	557.8051968241556	70.612	0.27073	70.672	70.507	70.777	0.060562					16	11	2	0	0	0	0.29844	1	16433	16433		22.736	0	1	83680	+		5802	8503	3876	3906	8001	8001					0.044860395768409944
GFLTKPVAA	9	Unmodified	_GFLTKPVAA_					0	0	0			REV__NUP88|p.P245A|1|0.3|ENSG00000108559|chr17:5408857-5408857|G/C|missense_variant	REV__NUP88|p.P245A|1|0.3|ENSG00000108559|chr17:5408857-5408857|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.26678466796875	2	452.268553	902.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.975	1	93.975	93.475	94.475	0								0	0	0	0.27613	1	23712	23712		3.9444	0	1		+		5803	8619	3877	3907	8002	8002					0.06739276765461
GFLYDSSYTL	10	Unmodified	_GFLYDSSYTL_					0	0	0			REV__GPR156|p.A102D|1|0.09|ENSG00000175697|chr3:120193353-120193353|G/T|missense_variant	REV__GPR156|p.A102D|1|0.09|ENSG00000175697|chr3:120193353-120193353|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2738647460938	2	583.274229	1164.53391	0.47966	0.00027977	-0.039208	-2.2869E-05	0.44045	0.0002569	583.274029518042	61.578	1.3866	61.578	61.218	62.605	0					173	63	3	0	0	0	0.38104	1	14023	14023		13.906	3.1065	1	6697000	+		5804	12660	3878	3908	8003	8003					-0.0417799072172329
GFQAQDISGQK	11	Unmodified	_GFQAQDISGQK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7977905273438	2	589.793652	1177.57275	0.88369	0.0005212	4.0213	0.0023717	4.9049	0.0028929	589.7950794402947	84.449	0.47088	84.449	84.367	84.838	0					63	30	3	0	0	0	0.351	1	20894	20894		12.175	2.1008	1	1129500			5805	3517	3879	3909	8004	8004					-0.008932653673582536
GFQEETNK	8	Unmodified	_GFQEETNK_					0	0	0			REV__ENST00000436924.5_1_2:28115269-28117419:+|nuORF	REV__ENST00000436924.5_1_2:28115269-28117419:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2869873046875	2	476.722164	951.429775	0.19138	9.1235E-05	-2.2927	-0.001093	-2.1013	-0.0010018	476.7209078347754	70.164	0.39138	70.224	70.086	70.477	0.060562					20	15	2	0	0	0	0.3576	1	16376	16376		4.756	1.8668	1	94586	+		5806	11867	3880	3910	8005	8005					-0.04788272758582934
GFQRCREL	8	Unmodified	_GFQRCREL_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7554931640625	2	504.755818	1007.49708	0.045888	2.3162E-05	-0.71193	-0.00035935	-0.66604	-0.00033619	504.75526092802835	86.938	1.3094	86.938	86.639	87.948	0					151	52	4	0	0	0	0.51415	1	21757	21757		10.824	0.75	1	4675100	+		5807	8823	3881	3911	8006	8006					-0.00636521028604875
GFSEKLQIVL	10	Unmodified	_GFSEKLQIVL_					0	0	0			REV__ENSG00000102837|ENST00000219022|OLFM4	REV__ENSG00000102837|ENST00000219022|OLFM4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.72802734375	2	567.331882	1132.64921	0.76843	0.00043595	-3.2419	-0.0018393	-2.4735	-0.0014033	567.3297289756604	80.387	0.47089	80.387	80.257	80.728	0					22	16	2	0	0	0	0.31616	1	19659	19659		10.074	3.8681	1	71104	+		5808	8457	3882	3912	8007	8007					0.0881915819995811
GFSHWPQLDD	10	Unmodified	_GFSHWPQLDD_					0	0	0			REV__nc|ENSG00000142192|P05067-10|APP	REV__nc|ENSG00000142192|P05067-10|APP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.268798828125	2	601.26727	1200.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.622	1	37.622	37.122	38.122	0								0	0	0	0.33916	1	6576	6576		1.1933	0.23107	1		+		5809	9423	3883	3913	8008	8008					-0.07225223430145888
GFSLRYEIF	9	Unmodified	_GFSLRYEIF_					0	0	0		nc|ENSG00000118257|O60462-6|NRP2;nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2	nc|ENSG00000118257|O60462-6|NRP2	nc|ENSG00000118257|O60462-6|NRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2969360351562	2	566.295299	1130.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.59	1	102.63	102.13	103.13	0.040916								0	0	0	0.23884	1	26171	26171		11.64	0	1				5810	2033	3884	3914	8009	8009					0.01598029477304408
GFSRYKEDY	9	Unmodified	_GFSRYKEDY_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7699584960938	2	582.769645	1163.52474	0.24487	0.0001427	0.13162	7.6702E-05	0.37649	0.0002194	582.7696614891018	58.627	2.4128	58.627	58.256	60.669	0					134	90	3	0	0	0	0.26104	1	13540	13540		11.495	1.4208	1	219540			5811	4029	3885	3915	8010	8010					-0.05048339287372983
GFSTGITSRGV	11	Unmodified	_GFSTGITSRGV_					0	0	0			REV__nc|ENSG00000185480|Q9NWS1-5|PARPBP	REV__nc|ENSG00000185480|Q9NWS1-5|PARPBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2852783203125	2	541.285463	1080.55637	0.24266	0.00013135	-0.23094	-0.000125	0.011722	6.3452E-06	541.2852313127812	19.429	0.45113	19.525	19.348	19.799	0.095232					109	51	3	0	0	0	0.41369	1	1245	1245		1.1933	0	1	55275	+		5812	10672	3886	3916	8011	8011					0.01931653466544958
GFSVKYSAKF	10	Unmodified	_GFSVKYSAKF_					0	0	0		nc|ENSG00000139292|O75473-3|LGR5;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5	nc|ENSG00000139292|O75473-3|LGR5	nc|ENSG00000139292|O75473-3|LGR5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2789916992188	2	567.303124	1132.5917	0.31635	0.00017947	-0.31821	-0.00018052	-0.0018611	-1.0558E-06	567.3029291564602	68.5	0.44551	68.563	68.408	68.854	0.063507					25	16	2	0	0	0	0.31288	1	15865	15865		10.824	0	1	86391			5813	2963	3887	3917	8012	8012					0.030703159943641367
GFSWFWFR	8	Unmodified	_GFSWFWFR_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2981567382812	2	566.771794	1131.52904	0.1746	9.896E-05	3.5349	0.0020035	3.7095	0.0021024	566.7732158560958	91.202	2.5044	91.238	90.331	92.835	0.035446					139	92	2	0	0	0	0.34837	1	23109	23109		21.747	4.8044	1	362450			5814	5602	3888	3918	8013	8013					-0.0314678528316108
GFSYCRTSFA	10	Unmodified	_GFSYCRTSFA_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7536010742188	2	569.752941	1137.49133	-0.019872	-1.1322E-05	0.47597	0.00027118	0.45609	0.00025986	569.7536471922591	39.959	0.39994	40.048	39.788	40.188	0.088566					23	15	2	0	0	0	0.45794	1	7140	7140		3.2813	0.70383	1	42196	+		5815	9813	3889	3919	8014	8014					-0.07191664330935055
GFTLGVEDIL	10	Unmodified	_GFTLGVEDIL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.78466796875	2	532.28714	1062.55973	0.31325	0.00016674	-1.4324	-0.00076244	-1.1191	-0.0005957	532.2864190338503	78.03	0.60813	78.03	77.84	78.448	0					31	20	2	0	0	0	0.31616	1	18897	18897		10.074	0.6908	1	185790			5816	733	3890	3920	8015	8015					0.030949035205594555
GFVTMIHTEM	10	Unmodified	_GFVTMIHTEM_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2742309570312	2	583.272652	1164.53075	0.67572	0.00039413	1.6419	0.00095765	2.3176	0.0013518	583.2734084275793	62.934	1.2837	63.007	62.478	63.761	0.072701					82	49	2	0	0	0	0.34138	1	14118	14118		18.146	4.2403	1	665380	+		5817	9754	3891	3921	8016	8016					-0.044932803717301795
GFYLGTWRDG	10	Unmodified	_GFYLGTWRDG_					0	0	0		nc|ENSG00000188917|Q96GJ1-3|TRMT2B;nc|ENSG00000188917|Q96GJ1-2|TRMT2B;ENSG00000188917|ENST00000372936|TRMT2B	nc|ENSG00000188917|Q96GJ1-3|TRMT2B	nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.1783447265625	2	586.28018	1170.54581	0.21897	0.00012838	0.27904	0.00016359	0.49801	0.00029197	586.2803511450388	40.525	0.28493	40.615	40.458	40.743	0.089645					19	10	3	0	0	0	0.31834	1	7337	7337		1.6526	0.45928	1	29394			5818	5181	3892	3922	8017	8017					-0.03264329187868498
GGEDCFFINQF	11	Unmodified	_GGEDCFFINQF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.769287109375	2	638.768788	1275.52302	-0.19262	-0.00012304	0.2902	0.00018537	0.097584	6.2333E-05	638.7688925876349	32.576	0.79504	32.576	32.405	33.2	0					74	36	3	0	0	0	0.41359	1	5118	5118		0.26902	0	1	49117			5819	752	3893	3923	8018	8018					-0.10371716367671979
GGEWPKEQSW	10	Unmodified	_GGEWPKEQSW_					0	0	0			REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF	REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2749633789062	2	602.275095	1202.53564	0.44754	0.00026954	-0.27628	-0.0001664	0.17126	0.00010314	602.2749385235237	56.181	0.62298	56.181	55.889	56.512	0					51	22	3	0	0	0	0.33001	2	12167	12167;12220		19.362	4.5237	1	1045400	+		5820	11512	3894	3924	8019;8020	8019					-0.057529369130861596
GGEWPKEQSW	10	Unmodified	_GGEWPKEQSW_					0	0	0			REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF	REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.275146484375	2	602.275095	1202.53564	0.44754	0.00026954	-0.27628	-0.0001664	0.17126	0.00010314	602.2749385235237	56.181	0.62298	56.181	55.889	56.512	0					51	22	3	0	0	0	0.31645	1	12265	12265		10.151	2.2404	1	1045400	+		5821	11512	3894	3924	8021	8021					-0.057529369130861596
GGEWPKEQSW	10	Unmodified	_GGEWPKEQSW_					0	0	0			REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF	REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2752075195312	2	602.275095	1202.53564	0.38133	0.00022967	-0.29234	-0.00017607	0.088992	5.3598E-05	602.2749743509919	56.075	0.5742	56.142	55.948	56.522	0.066452					51	21	3	0	0	0	0.37637	1	12009	12009		14.405	0.79051	1	1044000	+		5822	11512	3894	3924	8022	8022					-0.057529369130861596
GGEWPKEQSW	10	Unmodified	_GGEWPKEQSW_					0	0	0			REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF	REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2750854492188	2	602.275095	1202.53564	0.38133	0.00022967	-0.29234	-0.00017607	0.088992	5.3598E-05	602.2749743509919	56.075	0.5742	56.142	55.948	56.522	0.066452					51	21	3	0	0	0	0.29402	1	12055	12055		24.991	7.8781	1	1044000	+		5823	11512	3894	3924	8023	8023					-0.057529369130861596
GGFFHCLP	8	Unmodified	_GGFFHCLP_					0	0	0			REV__ENST00000271764.6_2_1:206778821-206782766:-|nuORF	REV__ENST00000271764.6_2_1:206778821-206782766:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.20489501953125	2	439.204899	876.395244	0.55912	0.00024557	-0.60429	-0.00026541	-0.045169	-1.9838E-05	439.2045416628153	57.308	0.9614	57.308	56.974	57.935	0					55	34	2	0	0	0	0.46808	2	12538	12538;12591		17.087	17.087	1	103400	+		5824	11273	3895	3925	8024;8025	8024					-0.04789767380373178
GGFFHCLP	8	Unmodified	_GGFFHCLP_					0	0	0			REV__ENST00000271764.6_2_1:206778821-206782766:-|nuORF	REV__ENST00000271764.6_2_1:206778821-206782766:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2406311035156	2	439.204899	876.395244	0.48235	0.00021185	-1.373	-0.00060301	-0.89062	-0.00039117	439.20437768772524	54.641	0.36086	54.706	54.594	54.955	0.065128					20	16	2	0	0	0	0.3576	1	11608	11608		6.3541	0	1	51198	+		5825	11273	3895	3925	8026	8026					-0.04789767380373178
GGFFHCLP	8	Unmodified	_GGFFHCLP_					0	0	0			REV__ENST00000271764.6_2_1:206778821-206782766:-|nuORF	REV__ENST00000271764.6_2_1:206778821-206782766:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2044982910156	2	439.204899	876.395244	0.26756	0.00011751	-0.31595	-0.00013877	-0.048387	-2.1252E-05	439.2046699486128	57.194	0.80947	57.263	56.993	57.802	0.068371					52	30	2	0	0	0	0.35256	1	12399	12399		17.087	17.087	1	81620	+		5826	11273	3895	3925	8027	8027					-0.04789767380373178
GGGPPPGG	8	Unmodified	_GGGPPPGG_					0	0	0			REV__nc|ENSG00000091622|Q9BZ71-3|PITPNM3	REV__nc|ENSG00000091622|Q9BZ71-3|PITPNM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.28369140625	1	595.283451	594.276175	0.22777	0.00013559	1.023	0.000609	1.2508	0.00074459	595.2841783393928	104.37	0.22427	104.41	104.31	104.53	0.034004					23	20	2	0	0	0	0.54081	1	26662	26662		0.79363	0	1	144250	+		5827	8323	3896	3926	8028	8028					-0.037192180135662056
GGGSSRWLLAM	11	Unmodified	_GGGSSRWLLAM_					0	0	0			REV__nc|ENSG00000121380|Q9BZR8-3|BCL2L14	REV__nc|ENSG00000121380|Q9BZR8-3|BCL2L14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2596435546875	2	567.789858	1133.56516	-0.13015	-7.39E-05	0.29818	0.0001693	0.16803	9.5404E-05	567.7900551020019	40.312	0.33234	40.401	40.237	40.569	0.089645					18	12	2	0	0	0	0.31095	1	7230	7230		1.1933	0.59184	1	43383	+		5828	12780	3897	3927	8029	8029					0.0037230383138648904
GGGSSRWLLAM	11	Unmodified	_GGGSSRWLLAM_					0	0	0			REV__nc|ENSG00000121380|Q9BZR8-3|BCL2L14	REV__nc|ENSG00000121380|Q9BZR8-3|BCL2L14	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	567.789858	1133.56516	-0.286	-0.00016239	-0.15373	-8.7286E-05	-0.43973	-0.00024968	567.7900048329564	40.421	0.31215	40.421	40.281	40.593	0	0.0097782	-0.00032125	NaN	1.1933	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26462	+		5829	12780	3897	3927							0.0037230383138648904
GGHPPGDMWTF	11	Unmodified	_GGHPPGDMWTF_					0	0	0			REV__nc|ENSG00000229214|Q5T6M2|LINC00242	REV__nc|ENSG00000229214|Q5T6M2|LINC00242	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2596435546875	2	601.258391	1200.50223	0.61874	0.00037202	0.47817	0.00028751	1.0969	0.00065953	601.2585393610364	69.782	0.82742	69.782	69.545	70.372	0					61	29	3	0	0	0	0.35043	1	16386	16386		12.241	2.1667	1	251500	+		5830	12896	3898	3928	8030	8030					-0.09000261956657596
GGHQHDDNI	9	Unmodified	_GGHQHDDNI_					0	0	0		ENST00000354955.4_1_1:203310597-203310816:-|nuORF	ENST00000354955.4_1_1:203310597-203310816:-|nuORF	ENST00000354955.4_1_1:203310597-203310816:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7122497558594	2	496.712662	991.410771	-0.021331	-1.0595E-05	-1.4742	-0.00073226	-1.4955	-0.00074285	496.7122429742359	29.982	0.48531	29.982	29.779	30.265	0					39	20	3	0	0	0	0.33978	1	4341	4341		1.4819	0.68827	1	15480			5831	6116	3899	3929	8031	8031					-0.08527809329632419
GGHVYGLF	8	Unmodified	_GGHVYGLF_					0	0	0		ENST00000262644.8_1_8:57871124-57871475:-|nuORF	ENST00000262644.8_1_8:57871124-57871475:-|nuORF	ENST00000262644.8_1_8:57871124-57871475:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.2146911621094	2	425.216321	848.418088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.779	1	94.779	94.279	95.279	0								0	0	0	0.38822	1	23957	23957		6.3541	4.0514	1				5832	5871	3900	3930	8032	8032					-0.012184249912479572
GGKRDVLE	8	Unmodified	_GGKRDVLE_					0	0	0		ENST00000487632.5_1_3:50387870-50388140:-|nuORF	ENST00000487632.5_1_3:50387870-50388140:-|nuORF	ENST00000487632.5_1_3:50387870-50388140:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.87896728515625	2	437.243067	872.47158	0.0063951	2.7962E-06	-0.053858	-2.3549E-05	-0.047462	-2.0753E-05	437.24293792935197	28.578	0.23587	28.578	28.463	28.699	0					14	8	2	0	0	0	0.3576	1	3882	3882		0.69038	0	1	15614			5833	6792	3901	3931	8033	8033					0.030243277206068342
GGKRDVLE	8	Unmodified	_GGKRDVLE_					0	0	0		ENST00000487632.5_1_3:50387870-50388140:-|nuORF	ENST00000487632.5_1_3:50387870-50388140:-|nuORF	ENST00000487632.5_1_3:50387870-50388140:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	437.243067	872.47158	-0.24822	-0.00010853	0.055903	2.4443E-05	-0.19232	-8.4089E-05	437.243055773898	28.503	0.21488	28.585	28.471	28.686	0.082134	0.0036538	7.2008E-05	NaN	0.69038	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12384			5834	6792	3901	3931							0.030243277206068342
GGLDGRVRT	9	Unmodified	_GGLDGRVRT_					0	0	0			REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7333984375	2	465.759415	929.504277	0.20684	9.6337E-05	2.9644	0.0013807	3.1712	0.001477	465.76056751301155	78.459	0.33753	78.489	78.374	78.712	0.030159					18	11	2	0	0	0	0.25579	1	18887	18887		4.3292	0.38484	1	193780	+		5835	7960	3902	3932	8034	8034					0.03670534843467976
GGLYLCELSQL	11	Unmodified	_GGLYLCELSQL_					0	0	0			REV__ENSG00000163428|ENST00000295628|LRRC58	REV__ENSG00000163428|ENST00000295628|LRRC58	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3049926757812	2	598.305007	1194.59546	0.49842	0.00029821	-0.021328	-1.2761E-05	0.47709	0.00028545	598.3052568164035	66.154	0.54968	66.221	66.082	66.632	0.066872					28	20	2	0	0	0	0.30908	1	15103	15103		16.149	0	1	123730	+		5836	9939	3903	3933	8035	8035					0.0059461770592861285
GGNSSFLVKLD	11	Unmodified	_GGNSSFLVKLD_					0	0	0			REV__ENST00000586944.5_1_19:807712-810823:+|nuORF	REV__ENST00000586944.5_1_19:807712-810823:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.800048828125	2	568.800946	1135.58734	-0.24359	-0.00013856	-0.015002	-8.533E-06	-0.25859	-0.00014709	568.8008812041526	42.526	0.55344	42.616	42.401	42.955	0.089767					50	20	4	0	0	0	0.39744	1	8021	8021		4.897	4.897	1	312110	+		5837	7978	3904	3934	8036	8036					0.024968067808231353
GGPVFSWR	8	Unmodified	_GGPVFSWR_					0	0	0		nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;CON__Q0VCM5;ENSG00000055957|ENST00000273283|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.7599182128906	2	453.235045	904.455536	0.93261	0.00042269	3.6811	0.0016684	4.6137	0.0020911	453.23678094380404	81.01	0.33337	81.01	80.902	81.235	0					13	10	2	0	0	0	0.3528	1	19810	19810		18.135	2.3668	1	69640		+	5838	227	3905	3935	8037	8037					-0.0005133372562795557
GGRRRLRV	8	Unmodified	_GGRRRLRV_					0	0	0		ENST00000526510.5_1_11:67166244-67166426:-|nuORF	ENST00000526510.5_1_11:67166244-67166426:-|nuORF	ENST00000526510.5_1_11:67166244-67166426:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.3214111328125	2	485.312484	968.610414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.57	1	109.59	109.09	110.09	0.019402								0	0	0	0.38822	1	28026	28026		5.2307	2.6532	1				5839	6990	3906	3936	8038	8038					0.12485335199460224
GGSLLGAARH	10	Unmodified	_GGSLLGAARH_					0	0	0		ENSG00000181027|ENST00000318584|FKRP	ENSG00000181027|ENST00000318584|FKRP	ENSG00000181027|ENST00000318584|FKRP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7616271972656	2	469.761958	937.509363	-0.49642	-0.0002332	-0.040121	-1.8847E-05	-0.53655	-0.00025205	469.76189550168806	17.993	0.56097	17.993	17.875	18.436	0					128	68	3	0	0	0	0.20801	1	1023	1023		32.786	1.5173	1	111480			5840	4827	3907	3937	8039	8039					0.03810838706078812
GGVSVREAAF	10	Unmodified	_GGVSVREAAF_					0	0	0			REV__ENST00000576393.5_1_17:79651084-79657315:+|nuORF	REV__ENST00000576393.5_1_17:79651084-79657315:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7613220214844	2	496.761623	991.508694	-0.32699	-0.00016244	0.01241	6.1649E-06	-0.31458	-0.00015627	496.761722177693	42.421	0.65842	42.421	42.106	42.764	0					50	22	4	0	0	0	0.30966	1	8011	8011		21.537	2.28	1	106240	+		5841	12537	3908	3938	8040	8040					0.012599992663808735
GGYGGGNG	8	Unmodified	_GGYGGGNG_					0	0	0			REV__nc|ENSG00000175592|P15407-2|FOSL1	REV__nc|ENSG00000175592|P15407-2|FOSL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.267333984375	1	638.252879	637.245603	0.22763	0.00014528	-0.018145	-1.1581E-05	0.20948	0.0001337	638.2487441319618	96.119	0.063629	96.119	96.07	96.134	0					4	2	2	0	0	0	0.54199	1	24365	24365		0	0	1	15394	+		5842	10381	3909	3939	8041	8041					-0.08752996398618507
GGYIVVFPDF	10	Unmodified	_GGYIVVFPDF_					0	0	0		tr|U7SZ55|U7SZ55_FUSNUHicB-likeantitoxinoftoxin-antitoxinsystemdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00850PE=4SV=1	tr|U7SZ55|U7SZ55_FUSNUHicB-likeantitoxinoftoxin-antitoxinsystemdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00850PE=4SV=1	tr|U7SZ55|U7SZ55_FUSNUHicB-likeantitoxinoftoxin-antitoxinsystemdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00850PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2843017578125	2	557.2844	1112.55425	0.43547	0.00024268	-1.2971	-0.00072285	-0.86163	-0.00048017	557.2835357875484	77.693	0.3355	77.693	77.504	77.84	0					17	11	2	0	0	0	0.30149	1	18756	18756		20.454	5.2051	1	197560			5843	13654	3910	3940	8042	8042					0.002472247287414575
GGYLVYCTC	9	Unmodified	_GGYLVYCTC_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF;ENST00000544630.1_1_12:6669555-6669953:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7060852050781	2	489.706614	977.398675	0.18745	9.1795E-05	-1.3551	-0.00066358	-1.1676	-0.00057178	489.705867812022	86.551	0.47984	86.578	86.26	86.74	0.027573					23	20	2	0	0	0	0.31496	1	21269	21269		4.756	2.1785	1	155400			5844	1714	3911	3941	8043	8043					-0.09092885388679406
GGYRDICSL	9	Unmodified	_GGYRDICSL_					0	0	0			REV__ENST00000470520.5_1_1:1244480-1246298:+|nuORF	REV__ENST00000470520.5_1_1:1244480-1246298:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2431945800781	2	492.234384	982.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.451	1	30.527	30.027	31.027	0.075403								0	0	0	0.26517	1	4309	4309		6.2058	0.97511	1		+		5845	12029	3912	3942	8044	8044					-0.037713358767064165
GHCYKPFT	8	Unmodified	_GHCYKPFT_					0	0	0		ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7208251953125	2	476.720913	951.427273	0.22879	0.00010907	-0.44744	-0.00021331	-0.21866	-0.00010424	476.72065590873956	83.224	1.1509	83.224	82.928	84.079	0					55	38	2	0	0	0	0.53817	1	20441	20441		2.5775	0	1	115840			5846	3197	3913	3943	8045	8045					-0.05038399697230034
GHDFIGEFQT	10	Unmodified	_GHDFIGEFQT_					0	0	0		CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant;nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant	CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7618408203125	2	575.76182	1149.50909	0.1825	0.00010508	0.037605	2.1652E-05	0.22011	0.00012673	575.7618025865241	52.572	0.91705	52.572	52.337	53.254	0					69	33	3	0	0	0	0.42901	1	11088	11088		8.7454	1.4562	1	565210			5847	243	3914	3944	8046	8046					-0.05968625804439398
GHDFIGEFQT	10	Unmodified	_GHDFIGEFQT_					0	0	0		CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant;nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant	CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.761962890625	2	575.76182	1149.50909	0.3153	0.00018154	0.1798	0.00010352	0.4951	0.00028506	575.7617160091864	52.49	0.93278	52.558	52.339	53.272	0.067173					82	39	4	0	0	0	0.42901	1	10953	10953		8.7454	8.7454	1	560700			5848	243	3914	3944	8047	8047					-0.05968625804439398
GHEDSIVEWF	10	Unmodified	_GHEDSIVEWF_					0	0	0			REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF;REV__ENSG00000196230|ENST00000327892|TUBB	REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.7745361328125	2	609.774928	1217.5353	0.55426	0.00033798	-0.38416	-0.00023425	0.1701	0.00010372	609.7745013466462	63.992	0.86891	63.992	63.819	64.688	0					57	30	3	0	0	0	0.45794	1	14611	14611		3.2813	0.54611	1	387040	+		5849	12637;8514	3915	3945	8048	8048					-0.06476356632970237
GHGGGRLQSQL	11	Unmodified	_GHGGGRLQSQL_					0	0	0		AluY_dup5563|chr1:153565030-153565335:+|2.6619431302774155|0.3334509562957031|3.0|521.0|6|2|sense	AluY_dup5563|chr1:153565030-153565335:+|2.6619431302774155|0.3334509562957031|3.0|521.0|6|2|sense	AluY_dup5563|chr1:153565030-153565335:+|2.6619431302774155|0.3334509562957031|3.0|521.0|6|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7953491210938	2	555.294153	1108.57375	0.6474	0.0003595	-3.0223	-0.0016783	-2.3749	-0.0013188	555.2918357163688	53.261	1.288	53.327	52.932	54.22	0.06543					138	58	3	0	0	0	0.08336	1	11246	11246		49.527	1.9329	1	671470			5850	30	3916	3946	8049	8049					0.02380993792235131
GHHSAEGHHP	10	Unmodified	_GHHSAEGHHP_					0	0	0			REV__ENSG00000175294|ENST00000312106|CATSPER1	REV__ENSG00000175294|ENST00000312106|CATSPER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.234619140625	2	533.234096	1064.45364	0.52201	0.00027835	0.8135	0.00043379	1.3355	0.00071214	533.2344271176127	94.285	0.61876	94.323	94.123	94.742	0.038086					64	24	5	0	0	0	0.46656	1	23659	23659		1.6526	0.17072	1	350120	+		5851	10376	3917	3947	8050	8050					-0.07600994481526868
GHIDINEFL	9	Unmodified	_GHIDINEFL_					0	0	0		ENSG00000156194|ENST00000286719|PPEF2	ENSG00000156194|ENST00000286719|PPEF2	ENSG00000156194|ENST00000286719|PPEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2620239257812	2	529.269281	1056.52401	0.18535	9.8099E-05	4.3524	0.0023036	4.5378	0.0024017	529.271542338541	50.683	0.28146	50.683	50.514	50.795	0					14	9	2	0	0	0	0.15282	1	10493	10493		24.021	2.2739	1	117280			5852	3613	3918	3948	8051	8051					-0.001991339364394662
GHKYRLIKH	9	Unmodified	_GHKYRLIKH_					0	0	0		nc|ENSG00000197128|Q68DY9-2|ZNF772;ENSG00000197128|ENST00000356584|ZNF772;nc|ENSG00000197128|Q68DY9|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.342041015625	2	576.343449	1150.67235	0.28926	0.00016671	-2.6173	-0.0015085	-2.3281	-0.0013418	576.3415430463064	109.56	0.10515	109.58	109.53	109.64	0.019402					11	8	2	0	0	0	0.33704	1	28030	28030		1.8442	0.19162	1	463450			5853	5275	3919	3949	8052	8052					0.10303641827931642
GHKYRLIKH	9	Unmodified	_GHKYRLIKH_					0	0	0		nc|ENSG00000197128|Q68DY9-2|ZNF772;ENSG00000197128|ENST00000356584|ZNF772;nc|ENSG00000197128|Q68DY9|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	576.343449	1150.67235	-0.050146	-2.8901E-05	-2.2091	-0.0012732	-2.2593	-0.0013021	576.341871207791	109.54	0.14156	109.54	109.46	109.6	0	-0.022569	0.0002177	NaN	1.8442	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228770			5854	5275	3919	3949							0.10303641827931642
GHLFRPDNFIF	11	Unmodified	_GHLFRPDNFIF_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9034423828125	3	454.903295	1361.68806	0.10239	4.6579E-05	-0.33816	-0.00015383	-0.23577	-0.00010725	454.90333350621495	58.464	0.58199	58.534	58.387	58.969	0.070477					34	19	3	0	0	0	0.38987	1	12757	12757		6.6235	0.3891	1	159690			5855	5708	3920	3950	8053	8053					0.021678835543070818
GHLGPVTAV	9	Unmodified	_GHLGPVTAV_					0	0	0		ENST00000496752.1_1_6:170065563-170070787:-|nuORF;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	ENST00000496752.1_1_6:170065563-170070787:-|nuORF	ENST00000496752.1_1_6:170065563-170070787:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.7420959472656	2	425.742702	849.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.152	1	72.152	71.652	72.652	0								0	0	0	0.28527	1	17062	17062		2.0598	0	1				5856	4980	3921	3951	8054	8054					0.04009533071553051
GHLGPVTAV	9	Unmodified	_GHLGPVTAV_					0	0	0		ENST00000496752.1_1_6:170065563-170070787:-|nuORF;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	ENST00000496752.1_1_6:170065563-170070787:-|nuORF	ENST00000496752.1_1_6:170065563-170070787:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.7420349121094	2	425.742702	849.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.059	1	72.115	71.615	72.615	0.055939								0	0	0	0.28527	1	16880	16880		2.0598	0	1				5857	4980	3921	3951	8055	8055					0.04009533071553051
GHLGPVTAV	9	Unmodified	_GHLGPVTAV_					0	0	0		ENST00000496752.1_1_6:170065563-170070787:-|nuORF;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	ENST00000496752.1_1_6:170065563-170070787:-|nuORF	ENST00000496752.1_1_6:170065563-170070787:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.741943359375	2	425.742702	849.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.253	1	72.309	71.809	72.809	0.055939								0	0	0	0.28527	1	16939	16939		2.0598	0	1				5858	4980	3921	3951	8056	8056					0.04009533071553051
GHPGFSQWL	9	Unmodified	_GHPGFSQWL_					0	0	0		ENST00000326685.11_1_5:148638855-148639278:+|nuORF	ENST00000326685.11_1_5:148638855-148639278:+|nuORF	ENST00000326685.11_1_5:148638855-148639278:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7493896484375	2	514.751059	1027.48756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.844	1	97.844	97.344	98.344	0								0	0	0	0.2428	1	24890	24890		10.824	2.2306	1				5859	6043	3922	3952	8057	8057					-0.025079660424808026
GHSGLSSNF	9	Unmodified	_GHSGLSSNF_					0	0	0		ENSG00000043355|ENST00000376335|ZIC2	ENSG00000043355|ENST00000376335|ZIC2	ENSG00000043355|ENST00000376335|ZIC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.20941162109375	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.28	1	103.28	102.78	103.78	0								0	0	0	0.28631	1	26543	26543		1.8442	0	1				5860	549	3923	3953	8058	8058					-0.05213122210193433
GHTMWKIN	8	Unmodified	_GHTMWKIN_					0	0	0			REV__AKAP14|p.P61A|1|0.26|ENSG00000186471|chrX:119903506-119903506|C/G|missense_variant	REV__AKAP14|p.P61A|1|0.26|ENSG00000186471|chrX:119903506-119903506|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2730407714844	2	493.747462	985.480371	0.5698	0.00028134	-0.29972	-0.00014798	0.27008	0.00013335	493.7472258563447	88.255	0.47575	88.255	88.085	88.56	0					31	17	3	0	0	0	0.3528	1	21931	21931		18.135	18.135	1	173240	+		5861	7704	3924	3954	8059	8059					-0.012950219145523079
GHTMWKIN	8	Unmodified	_GHTMWKIN_					0	0	0			REV__AKAP14|p.P61A|1|0.26|ENSG00000186471|chrX:119903506-119903506|C/G|missense_variant	REV__AKAP14|p.P61A|1|0.26|ENSG00000186471|chrX:119903506-119903506|C/G|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.747462	985.480371	0.41405	0.00020444	-0.43939	-0.00021695	-0.025343	-1.2513E-05	493.7471305380189	88.237	0.35023	88.267	88.11	88.46	0.030037	0.006233	-0.00010859	NaN	18.135	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141000	+		5862	7704	3924	3954							-0.012950219145523079
GHTQLLNM	8	Unmodified	_GHTQLLNM_					0	0	0			REV__ENSG00000198265|ENST00000358691|HELZ	REV__ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2544250488281	2	457.231645	912.448736	0.29317	0.00013405	-0.94849	-0.00043368	-0.65532	-0.00029963	457.23113871033325	53.228	0.20042	53.293	53.128	53.328	0.06543					11	9	2	0	0	0	0.3576	1	11145	11145		5.7604	1.0044	1	26965	+		5863	10891	3925	3955	8060	8060					-0.01099014668500331
GHVFCHDC	8	Unmodified	_GHVFCHDC_					0	0	0		ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1722106933594	2	459.173272	916.331992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.447	1	23.447	22.947	23.947	0								0	0	0	0.38822	1	2411	2411		0.79363	0.79363	1				5864	5188	3926	3956	8061	8061					-0.129520761599224
GHVPFDSF	8	Unmodified	_GHVPFDSF_					0	0	0			REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF	REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2096252441406	2	453.211235	904.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.495	1	86.523	86.023	87.023	0.027573								0	0	0	0.38822	1	21281	21281		0.79363	0	1		+		5865	9400	3927	3957	8062	8062					-0.04811032716474983
GHVPYGFP	8	Unmodified	_GHVPYGFP_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.21466064453125	2	437.216321	872.418088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.2	1	100.24	99.745	100.74	0.042839								0	0	0	0.38822	1	25452	25452		2.8892	0.31174	1		+		5866	10105	3928	3958	8063	8063					-0.02322424991234584
GHWISEEPF	9	Unmodified	_GHWISEEPF_					0	0	0		ENSG00000147316|ENST00000344683|MCPH1	ENSG00000147316|ENST00000344683|MCPH1	ENSG00000147316|ENST00000344683|MCPH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7251586914062	2	551.253631	1100.49271	0.29075	0.00016028	0.43309	0.00023874	0.72384	0.00039902	551.2538154097535	49.807	0.55369	49.807	49.653	50.206	0					23	19	2	0	0	0	0.25051	1	10362	10362		7.9102	0.62092	1	89320			5867	3323	3929	3959	8064	8064					-0.053517069705321774
GHYINGGF	8	Unmodified	_GHYINGGF_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.49029541015625	2	432.703577	863.392602	0.72001	0.00031155	0.34303	0.00014843	1.063	0.00045998	432.70375841301586	83.633	0.64865	83.633	83.371	84.02	0					33	21	2	0	0	0	0.3576	1	20532	20532		0.79363	0	1	141620			5868	5396	3930	3960	8065	8065					-0.04455899513652639
GHYINGGF	8	Unmodified	_GHYINGGF_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	432.703577	863.392602	0.13058	5.6502E-05	0.943	0.00040804	1.0736	0.00046454	432.70399877281267	83.565	0.62306	83.587	83.387	84.01	0.021744	-0.023386	0.00024331	NaN	0.79363	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105500			5869	5396	3930	3960							-0.04455899513652639
GIALPELICTM	11	Unmodified	_GIALPELICTM_					0	0	0		ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.806640625	2	580.806328	1159.5981	0.62912	0.0003654	-0.49301	-0.00028634	0.13611	7.9055E-05	580.806066043325	88.081	0.51881	88.081	87.855	88.374	0					37	18	4	0	0	0	0.30798	1	21911	21911		17.113	1.8644	1	457500			5870	4214	3931	3961	8066	8066					0.024687498392268026
GIALPELICTM	11	Unmodified	_GIALPELICTM_					0	0	0		ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.8064575195312	2	580.806328	1159.5981	0.5014	0.00029121	-0.27312	-0.00015863	0.22828	0.00013259	580.8061059299057	88.087	0.58824	88.117	87.823	88.411	0.030037					39	20	3	0	0	0	0.30798	1	21728	21728		17.113	1.8644	1	339950			5871	4214	3931	3961	8067	8067					0.024687498392268026
GIALPELICTM	11	Unmodified	_GIALPELICTM_					0	0	0		ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	580.806328	1159.5981	0.5014	0.00029121	-0.27312	-0.00015863	0.22828	0.00013259	580.8061059299057	88.087	0.58824	88.117	87.823	88.411	0.030037	0.017985	0.00012425	NaN	17.113	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339950			5872	4214	3931	3961							0.024687498392268026
GIESAELVF	9	Unmodified	_GIESAELVF_					0	0	0			REV__ENSG00000119913|ENST00000646139|TECTB	REV__ENSG00000119913|ENST00000646139|TECTB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7528076171875	2	482.752933	963.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.598	1	79.598	79.098	80.098	0								0	0	0	0.18435	1	19340	19340		20.454	0	1		+		5873	8865	3932	3962	8068	8068					0.008106589407248066
GIESAELVF	9	Unmodified	_GIESAELVF_					0	0	0			REV__ENSG00000119913|ENST00000646139|TECTB	REV__ENSG00000119913|ENST00000646139|TECTB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7528076171875	2	482.752933	963.491313	0.24688	0.00011918	0.64266	0.00031024	0.88953	0.00042942	482.75283582084813	79.532	0.36725	79.532	79.254	79.621	0					15	12	2	0	0	0	0.21603	1	19340	19340		20.454	0	1	88489	+		5874	8865	3932	3962	8069	8069					0.008106589407248066
GIFMELFESGN	11	Unmodified	_GIFMELFESGN_					0	0	0			REV__ENST00000557444.5_1_16:90055269-90057690:+|nuORF	REV__ENST00000557444.5_1_16:90055269-90057690:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.1941833496094	3	415.193635	1242.55907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.68	1	103.68	103.18	104.18	0								0	0	0	0.33362	1	26658	26658		1.2148	0	1		+		5875	11808	3933	3963	8070	8070					-0.05250259190779616
GIGWGWRF	8	Unmodified	_GIGWGWRF_					0	0	0		chrX:152697653-152698631|218|21.68|0.0|21.05|-|1|MAGEA3-DT,MAGEA3-DT|1	chrX:152697653-152698631|218|21.68|0.0|21.05|-|1|MAGEA3-DT,MAGEA3-DT|1	chrX:152697653-152698631|218|21.68|0.0|21.05|-|1|MAGEA3-DT,MAGEA3-DT|1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.75262451171875	2	489.750862	977.487171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.433	1	98.475	97.975	98.975	0.041931								0	0	0	0.38822	1	24915	24915		2.8892	0.31174	1				5876	191	3934	3964	8071	8071					-0.002473409716799324
GIIWDINSF	9	Unmodified	_GIIWDINSF_					0	0	0		CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586077.1_1_19:34890604-34890691:+|nuORF;ENST00000586392.1_1_19:34884680-34890938:+|nuORF	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2947998046875	2	532.7742	1063.53385	0.30659	0.00016334	-1.7945	-0.00095608	-1.4879	-0.00079274	532.7729716462842	78.389	0.60789	78.389	78.097	78.705	0					24	20	2	0	0	0	0.2491	1	19046	19046		8.5933	0.68312	1	66670		+	5877	236	3935	3965	8072	8072					0.004620540689529662
GIKKHRTSL	9	Unmodified	_GIKKHRTSL_					0	0	0		ENST00000585247.5_1_18:21776082-21819331:-|nuORF;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F749Lfs*59|1|0.27|ENSG00000141447|chr18:24171453-24171453|A/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	ENST00000585247.5_1_18:21776082-21819331:-|nuORF	ENST00000585247.5_1_18:21776082-21819331:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.7944946289062	2	520.322183	1038.62981	0.83864	0.00043636	-1.4856	-0.00077298	-0.64694	-0.00033661	520.3214315753373	80.67	0.35733	80.67	80.456	80.813	0					16	12	2	0	0	0	0.24929	1	19685	19685		9.3831	1.473	1	107660			5878	3058	3936	3966	8073	8073					0.11204246699708165
GILWRVLFF	9	Unmodified	_GILWRVLFF_					0	0	0		ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8432006835938	2	575.84222	1149.66989	0.71044	0.0004091	-0.2622	-0.00015098	0.44825	0.00025812	575.8417238989326	84.27	0.19421	84.27	84.105	84.299	0					16	9	2	0	0	0	0.31496	1	20736	20736		4.756	2.4533	1	488750			5879	7009	3937	3967	8074	8074					0.10103793370262792
GILWRVLFF	9	Unmodified	_GILWRVLFF_					0	0	0		ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8417358398438	2	575.84222	1149.66989	0.76843	0.00044249	-0.99029	-0.00057025	-0.22186	-0.00012776	575.8413780413409	84.521	1.1541	84.521	84.328	85.482	0					123	57	3	0	0	0	0.31136	2	20932	20932;20987		5.2307	2.6532	1	1661900			5880	7009	3937	3967	8075;8076	8075					0.10103793370262792
GILWRVLFF	9	Unmodified	_GILWRVLFF_					0	0	0		ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.84326171875	2	575.84222	1149.66989	0.34657	0.00019957	1.49	0.00085803	1.8366	0.0010576	575.8428036821286	88.716	0.56789	88.716	88.486	89.053	0					52	23	3	0	0	0	0.31136	1	22146	22146		5.2307	0	1	180170			5881	7009	3937	3967	8077	8077					0.10103793370262792
GILWRVLFF	9	Unmodified	_GILWRVLFF_					0	0	0		ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8421630859375	2	575.84222	1149.66989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.459	1	85.459	84.959	85.959	0								0	0	0	0.2699	1	21123	21123		5.2307	0.90143	1				5882	7009	3937	3967	8078	8078					0.10103793370262792
GILWRVLFF	9	Unmodified	_GILWRVLFF_					0	0	0		ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.84228515625	2	575.84222	1149.66989	0.51788	0.00029822	-0.46864	-0.00026986	0.049244	2.8357E-05	575.8416443056561	84.489	1.7086	84.512	84.012	85.72	0.023132					156	88	3	0	0	0	0.23437	5	20801	20801;20844;20891;20935;20979		14.582	9.351	1	1635200			5883	7009	3937	3967	8079;8080;8081;8082;8083	8079					0.10103793370262792
GIRLATSMATW	11	Unmodified	_GIRLATSMATW_					0	0	0		ENST00000599652.5_1_19:49965164-49969478:+|nuORF	ENST00000599652.5_1_19:49965164-49969478:+|nuORF	ENST00000599652.5_1_19:49965164-49969478:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2994384765625	2	603.818615	1205.62268	0.56468	0.00034096	-0.36611	-0.00022106	0.19857	0.0001199	603.8165820632911	62.178	0.61901	62.178	61.956	62.575	0					66	23	4	0	0	0	0.297	1	14007	14007		18.373	5.3306	1	381250			5884	7292	3938	3968	8084	8084					0.028091460369751076
GIVLQDSNMMS	11	Unmodified	_GIVLQDSNMMS_					0	0	0		nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1	nc|ENSG00000061337|Q9Y250-5|LZTS1	nc|ENSG00000061337|Q9Y250-5|LZTS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3502807617188	2	597.778299	1193.54204	0.33231	0.00019865	-3.1111	-0.0018598	-2.7788	-0.0016611	597.7765812261441	96.781	0.3069	96.82	96.632	96.939	0.039772					22	14	2	0	0	0	0.31076	1	24446	24446		3.2813	0.28607	1	150050			5885	648	3939	3969	8085	8085					-0.046985030682435536
GIVVALVFTF	10	Unmodified	_GIVVALVFTF_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.775146484375	2	533.320786	1064.62702	0.58376	0.00031133	-0.42921	-0.0002289	0.15456	8.2429E-05	533.3204401545825	63.191	0.65358	63.264	63.054	63.707	0.072697					45	26	2	0	0	0	0.31585	1	14283	14283		10.824	2.9138	1	209330	+		5886	9629	3940	3970	8086	8086					0.09728978522161924
GIWQLYHF	8	Unmodified	_GIWQLYHF_					0	0	0		nc|ENSG00000175029|P56545-3|CTBP2	nc|ENSG00000175029|P56545-3|CTBP2	nc|ENSG00000175029|P56545-3|CTBP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2948608398438	2	532.271627	1062.5287	0.55742	0.0002967	-0.48232	-0.00025673	0.075094	3.997E-05	532.772676630343	78.392	0.57396	78.422	78.138	78.712	0.030159					28	19	2	0	0	0	0.3576	1	18886	18886		5.7604	0	1	86848			5887	7561	3941	3971	8087	8087					-6.205003023751487E-05
GIYLLKHF	8	Unmodified	_GIYLLKHF_					0	0	0		tr|U7SHY6|U7SHY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02200PE=4SV=1	tr|U7SHY6|U7SHY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02200PE=4SV=1	tr|U7SHY6|U7SHY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02200PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.8049011230469	2	495.792195	989.569838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.62	1	104.62	104.12	105.12	0								0	0	0	0.38822	1	26928	26928		6.3541	1.1234	1				5888	13463	3942	3972	8088	8088					0.07463556036475438
GIYPHFLSF	9	Unmodified	_GIYPHFLSF_					0	0	0			REV__ENST00000504897.2_1_5:140053125-140053497:+|nuORF	REV__ENST00000504897.2_1_5:140053125-140053497:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.779541015625	2	540.779285	1079.54402	0.036957	1.9986E-05	-3.243	-0.0017537	-3.206	-0.0017338	541.2785122395283	72.647	1.0553	72.647	72.258	73.313	0					106	36	5	0	0	0	0.14718	1	17259	17259		24.674	0	1	1446300	+		5889	12218	3943	3973	8089	8089					0.007426617941746372
GKAFISFCAFR	11	Unmodified	_GKAFISFCAFR_					0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8233642578125	2	623.823701	1245.63285	-0.27344	-0.00017058	-0.79138	-0.00049368	-1.0648	-0.00066426	623.8233852065356	34.154	1.2969	34.154	33.883	35.18	0					165	49	6	0	0	0	0.40796	1	5772	5772		2.4985	0.41248	1	3146500			5890	6486	3944	3974	8090	8090					0.019857537621874144
GKEYYRIEY	9	Unmodified	_GKEYYRIEY_					0	0	0			REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.20379638671875	3	407.536389	1219.58734	0.19077	7.7744E-05	1.2447	0.00050724	1.4354	0.00058498	407.5369590074794	33.965	0.23676	33.965	33.854	34.091	0					11	8	2	0	0	0	0.26014	1	5471	5471		0.20686	0.047535	1	10968	+		5891	10595	3945	3975	8091	8091					-0.013671932191755332
GKFWRITL	8	Unmodified	_GKFWRITL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2808532714844	2	510.803094	1019.59164	0.56991	0.00029111	-0.89302	-0.00045616	-0.3231	-0.00016504	510.8025145193061	92.783	0.1658	92.821	92.698	92.863	0.037369					8	5	2	0	0	0	0.3576	1	23154	23154		4.756	0	1	43534	+		5892	9733	3946	3976	8092	8092					0.08262360785033707
GKGVGGGS	8	Unmodified	_GKGVGGGS_					0	0	0		ENST00000494550.5_1_6:33263795-33265760:-|nuORF;nc|ENSG00000237441|O15211-2|RGL2;ENST00000483151.5_1_6:33261379-33266279:-|nuORF;RGL2|p.L729Pfs*28|1|0.24|ENSG00000237441|chr6:33292252-33292253|-/A|frameshift_variant;ENSG00000237441|ENST00000497454|RGL2	ENST00000494550.5_1_6:33263795-33265760:-|nuORF	ENST00000494550.5_1_6:33263795-33265760:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3209838867188	1	618.320565	617.313289	-0.40263	-0.00024895	1.4933	0.00092333	1.0907	0.00067438	618.3219072888958	73.379	0.51653	73.379	73.313	73.829	0					24	18	2	0	0	0	0.54097	1	17452	17452		0.69038	0	1	223470			5893	5634	3947	3977	8093	8093					-0.010675464678001845
GKHYKKVVY	9	Unmodified	_GKHYKKVVY_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3270874023438	2	561.326934	1120.63931	-0.14449	-8.1105E-05	0.10374	5.8232E-05	-0.040748	-2.2873E-05	561.3269181274917	44.931	1.7304	44.931	44.689	46.42	0					159	60	4	0	0	0	0.3182	1	9009	9009		4.3292	0.38484	1	1048500		+	5894	228	3948	3978	8094	8094					0.08382014985249953
GKPHGRGV	8	Unmodified	_GKPHGRGV_					0	0	0		ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.23297119140625	2	404.232836	806.45112	0.4069	0.00016448	0.26659	0.00010776	0.67349	0.00027225	404.23287165774656	80.213	1.4907	80.237	79.645	81.136	0.023605					125	52	4	0	0	0	0.53858	1	19494	19494		2.3027	2.3027	1	3327200			5895	329	3949	3979	8095	8095					0.040152018514731935
GKPVVIPK	8	Unmodified	_GKPVVIPK_					0	0	0		nc|ENSG00000141429|Q10472-2|GALNT1;ENSG00000141429|ENST00000269195|GALNT1	nc|ENSG00000141429|Q10472-2|GALNT1	nc|ENSG00000141429|Q10472-2|GALNT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.80072021484375	2	419.281463	836.548374	0.1284	5.3834E-05	3.6731	0.0015401	3.8015	0.0015939	419.28361855986316	112.93	0.13149	112.93	112.89	113.02	0					24	16	2	0	0	0	0.3576	1	28951	28951		0	0	1	81463			5896	3055	3950	3980	8096	8096					0.12356171007752437
GKQILLPSDF	10	Unmodified	_GKQILLPSDF_					0	0	0		ENST00000409891.5_1_2:175431793-175431907:-|nuORF	ENST00000409891.5_1_2:175431793-175431907:-|nuORF	ENST00000409891.5_1_2:175431793-175431907:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3140258789062	2	559.316232	1116.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.318	1	91.318	90.818	91.818	0								0	0	0	0.33487	1	22905	22905		6.2058	0.44535	1				5897	6400	3951	3981	8097	8097					0.06426585165831966
GKRKEIDAD	9	Unmodified	_GKRKEIDAD_					0	0	0			REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7984008789062	2	516.277638	1030.54072	-0.059904	-3.0927E-05	0.92316	0.00047661	0.86326	0.00044568	516.2783135964798	31.209	0.72828	31.209	30.869	31.597	0					40	34	2	0	0	0	0.24791	1	4725	4725		10.074	0	1	34323	+		5898	8373	3952	3982	8098	8098					0.026673669495039576
GKTLLLHQW	9	Unmodified	_GKTLLLHQW_					0	0	0		CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46	CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.318359375	2	548.319109	1094.62366	0.0022489	1.2331E-06	-0.61473	-0.00033707	-0.61248	-0.00033584	548.3184912694912	109.92	0.11719	109.92	109.87	109.98	0					49	15	4	0	0	0	0.25579	1	28265	28265		1.8442	0	1	8030500			5899	126	3953	3983	8099	8099					0.0801372846817685
GKYRVYHNQ	9	Unmodified	_GKYRVYHNQ_					0	0	0		ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	ENSG00000171634|ENST00000306378|BPTF	ENSG00000171634|ENST00000306378|BPTF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8548583984375	2	582.799072	1163.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.848	1	98.848	98.348	99.348	0								0	0	0	0.28631	1	25196	25196		1.8442	0.51471	1				5900	4453	3954	3984	8100	8100					0.00834181797608835
GLAGLGIPF	9	Unmodified	_GLAGLGIPF_					0	0	0		ENSG00000187033|ENST00000335556|SAMD7	ENSG00000187033|ENST00000335556|SAMD7	ENSG00000187033|ENST00000335556|SAMD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1988220214844	2	422.749996	843.485439	0.53112	0.00022453	-0.52272	-0.00022098	0.0084059	3.5536E-06	422.7497351745934	79.197	0.47047	79.197	78.982	79.452	0					22	15	2	0	0	0	0.237	1	19235	19235		14.582	0	1	67818			5901	5105	3955	3985	8101	8101					0.05743605219697656
GLAGWWRF	8	Unmodified	_GLAGWWRF_					0	0	0		ENST00000263563.6_1_10:72327056-72327413:+|nuORF	ENST00000263563.6_1_10:72327056-72327413:+|nuORF	ENST00000263563.6_1_10:72327056-72327413:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7595520019531	2	496.758687	991.502821	0.62913	0.00031253	1.8374	0.00091276	2.4666	0.0012253	496.7594771738457	92.143	0.50457	92.143	91.927	92.431	0					43	18	3	0	0	0	0.51887	1	23230	23230		10.183	1.5901	1	195220			5902	5880	3956	3986	8102	8102					0.006729455453637456
GLAGWWRF	8	Unmodified	_GLAGWWRF_					0	0	0		ENST00000263563.6_1_10:72327056-72327413:+|nuORF	ENST00000263563.6_1_10:72327056-72327413:+|nuORF	ENST00000263563.6_1_10:72327056-72327413:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7598876953125	2	496.758687	991.502821	0.52453	0.00026056	1.9932	0.00099013	2.5177	0.0012507	496.7595561508621	92.145	0.51292	92.182	91.939	92.452	0.03653					34	17	3	0	0	0	0.53345	1	23054	23054		5.7604	0.52976	1	218100			5903	5880	3956	3986	8103	8103					0.006729455453637456
GLDDALFAL	9	Unmodified	_GLDDALFAL_					0	0	0			REV__ENST00000466409.1_1_9:95874378-95875386:+|nuORF	REV__ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.7460632324219	2	467.74765	933.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.195	1	69.195	68.695	69.695	0								0	0	0	0.18435	1	16161	16161		20.454	1.1966	1		+		5904	10030	3957	3987	8104	8104					0.011346762862785909
GLDKKEKS	8	Unmodified	_GLDKKEKS_					0	0	0			REV__nc|ENSG00000100100|Q96FE7-3|PIK3IP1	REV__nc|ENSG00000100100|Q96FE7-3|PIK3IP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2281799316406	2	452.758549	903.502546	0.58095	0.00026303	0.65816	0.00029799	1.2391	0.00056102	452.7587899953707	99.782	0.68388	99.782	99.433	100.12	0					64	36	2	0	0	0	0.3576	1	25492	25492		7.9102	7.9102	1	1307400	+		5905	8368	3958	3988	8105	8105					0.046934810348602696
GLDKKEKS	8	Unmodified	_GLDKKEKS_					0	0	0			REV__nc|ENSG00000100100|Q96FE7-3|PIK3IP1	REV__nc|ENSG00000100100|Q96FE7-3|PIK3IP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	452.758549	903.502546	0.40287	0.0001824	1.0111	0.00045781	1.414	0.00064021	452.7589894645284	99.66	0.56239	99.703	99.492	100.05	0.042839	-0.039567	9.1777E-05	NaN	7.9102	68	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1265400	+		5906	8368	3958	3988							0.046934810348602696
GLDMRMVI	8	Unmodified	_GLDMRMVI_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.7467346191406	2	467.746073	933.477594	-0.038159	-1.7849E-05	0.78186	0.00036571	0.74371	0.00034787	467.74654372314654	69.147	0.31232	69.209	69.108	69.42	0.062126					15	11	2	0	0	0	0.49148	1	16002	16002		13.906	0.86358	1	294300			5907	2613	3959	3989	8106	8106					0.008193866362717017
GLECTDLICY	10	Unmodified	_GLECTDLICY_					0	0	0		ENST00000447136.1_2_7:2376752-2393878:-|nuORF	ENST00000447136.1_2_7:2376752-2393878:-|nuORF	ENST00000447136.1_2_7:2376752-2393878:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2495727539062	2	565.248843	1128.48313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.697	1	26.697	26.197	27.197	0								0	0	0	0.33892	1	3333	3333		1.4819	0.79152	1				5908	6547	3960	3990	8107	8107					-0.0759697936257453
GLFAGECF	8	Unmodified	_GLFAGECF_					0	0	0			REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF	REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1889343261719	2	422.188914	842.363275	0.46565	0.00019659	-0.67823	-0.00028634	-0.21258	-8.9749E-05	422.1885206510296	95.845	0.70497	95.845	95.654	96.359	0					59	35	2	0	0	0	0.54081	1	24318	24318		0.79363	0	1	261080	+		5909	12403	3961	3991	8108	8108					-0.06421179854180536
GLFAGECF	8	Unmodified	_GLFAGECF_					0	0	0			REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF	REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1883850097656	2	422.188914	842.363275	0.66823	0.00028212	-0.84813	-0.00035807	-0.1799	-7.5952E-05	422.1884402096995	97.078	0.5877	97.078	96.851	97.438	0					46	28	2	0	0	0	0.54081	1	24657	24657		0.79363	0	1	136960	+		5910	12403	3961	3991	8109	8109					-0.06421179854180536
GLFAGECF	8	Unmodified	_GLFAGECF_					0	0	0			REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF	REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	422.188914	842.363275	0.46565	0.00019659	-0.67823	-0.00028634	-0.21258	-8.9749E-05	422.1885206510296	95.845	0.70497	95.845	95.654	96.359	0	0.057082	-0.00015245	NaN	0.79363	59	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261080	+		5911	12403	3961	3991							-0.06421179854180536
GLFAGECF	8	Unmodified	_GLFAGECF_					0	0	0			REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF	REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	422.188914	842.363275	0.12999	5.488E-05	-0.3171	-0.00013388	-0.18711	-7.8995E-05	422.1887015804562	95.692	0.64025	95.731	95.634	96.274	0.038872	-0.057082	0.00015248	NaN	0.79363	54	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632240	+		5912	12403	3961	3991							-0.06421179854180536
GLFSYDSL	8	Unmodified	_GLFSYDSL_					0	0	0		nc|ENSG00000152527|Q8IVE3-3|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF;ENSG00000152527|ENST00000282406|PLEKHH2	nc|ENSG00000152527|Q8IVE3-3|PLEKHH2	nc|ENSG00000152527|Q8IVE3-3|PLEKHH2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.2325744628906	2	451.218726	900.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.523	1	52.523	52.023	53.023	0								0	0	0	0.38822	1	11080	11080		2.8892	0	1				5913	3497	3962	3992	8110	8110					-0.03129585639146626
GLIAELLSL	9	Unmodified	_GLIAELLSL_					0	0	0			REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF	REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.7889404296875	2	464.789318	927.564084	0.83022	0.00038588	-0.64661	-0.00030054	0.1836	8.5337E-05	464.7888915463372	81.553	0.43359	81.553	81.347	81.78	0					28	14	3	0	0	0	0.037705	1	19927	19927		46.021	6.0636	1	146020	+		5914	12150	3963	3993	8111	8111					0.09740412734140591
GLIAELLSL	9	Unmodified	_GLIAELLSL_					0	0	0			REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF	REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.78924560546875	2	464.789318	927.564084	0.27499	0.00012781	-0.21623	-0.0001005	0.058766	2.7314E-05	464.78902672379127	81.534	0.46254	81.555	81.329	81.792	0.021866					31	16	3	0	0	0	0.037705	2	19752	19752;19805		46.021	6.0636	1	130120	+		5915	12150	3963	3993	8112;8113	8112					0.09740412734140591
GLIAELLSL	9	Unmodified	_GLIAELLSL_					0	0	0			REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF	REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	464.789318	927.564084	0.83022	0.00038588	-0.64661	-0.00030054	0.1836	8.5337E-05	464.7888915463372	81.553	0.43359	81.553	81.347	81.78	0	-0.0010506	-0.00021509	NaN	46.021	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146020	+		5916	12150	3963	3993							0.09740412734140591
GLIAELLSL	9	Unmodified	_GLIAELLSL_					0	0	0			REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF	REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	464.789318	927.564084	0.27499	0.00012781	-0.21623	-0.0001005	0.058766	2.7314E-05	464.78902672379127	81.534	0.46254	81.555	81.329	81.792	0.021866	0.0010506	0.00018499	NaN	46.021	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130120	+		5917	12150	3963	3993							0.09740412734140591
GLKILLYYI	9	Unmodified	_GLKILLYYI_					0	0	0		ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3461303710938	2	548.344261	1094.67397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.27	1	89.27	88.77	89.77	0								0	0	0	0.28409	1	22280	22280		2.3027	1.7012	1				5918	2408	3964	3994	8114	8114					0.1304183807330901
GLKTRCSSC	9	Unmodified	_GLKTRCSSC_					0	0	0		ENSG00000198795|ENST00000361524|ZNF521	ENSG00000198795|ENST00000361524|ZNF521	ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.72894287109375	2	477.728412	953.442271	0.21054	0.00010058	0.27337	0.0001306	0.48391	0.00023118	477.72864967801377	93.317	0.41052	93.355	93.195	93.606	0.037369					29	17	2	0	0	0	0.33849	1	23344	23344		1.6526	0.17072	1	117200			5919	5407	3965	3995	8115	8115					-0.036312758915414634
GLLSAGRGGVA	11	Unmodified	_GLLSAGRGGVA_					0	0	0		ENST00000265393.10_1_7:27779738-27779792:+|nuORF	ENST00000265393.10_1_7:27779738-27779792:+|nuORF	ENST00000265393.10_1_7:27779738-27779792:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2776184082031	2	479.277441	956.540328	0.071114	3.4083E-05	0.16688	7.9981E-05	0.23799	0.00011406	479.2774235118305	76.659	0.90096	76.659	76.331	77.231	0					81	31	3	0	0	0	0.39569	2	18441	18441;18485		5.2969	0	1	410100			5920	5899	3966	3996	8116;8117	8116					0.06031992020336929
GLLSAGRGGVA	11	Unmodified	_GLLSAGRGGVA_					0	0	0		ENST00000265393.10_1_7:27779738-27779792:+|nuORF	ENST00000265393.10_1_7:27779738-27779792:+|nuORF	ENST00000265393.10_1_7:27779738-27779792:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774353027344	2	479.277441	956.540328	0.10733	5.1439E-05	0.10607	5.0836E-05	0.2134	0.00010228	479.2773625245644	76.7	0.89496	76.739	76.313	77.207	0.03923					80	32	3	0	0	0	0.39569	1	18312	18312		5.2969	0	1	425500			5921	5899	3966	3996	8118	8118					0.06031992020336929
GLLSPQRKE	9	Unmodified	_GLLSPQRKE_					0	0	0		nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.298583984375	2	514.298373	1026.58219	0.36859	0.00018957	0.027387	1.4085E-05	0.39598	0.00020365	514.2983341566604	90.835	0.71953	90.835	90.549	91.269	0					51	25	3	0	0	0	0.29576	1	22781	22781		7.2892	7.2892	1	388370			5922	3682	3967	3997	8119	8119					0.0699654770885445
GLLYLQLGI	9	Unmodified	_GLLYLQLGI_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.3052673339844	2	495.305136	988.595718	0.58978	0.00029212	0.017346	8.5915E-06	0.60713	0.00030071	495.3049772444937	82.715	0.42792	82.715	82.595	83.023	0					28	14	3	0	0	0	0.21398	1	20300	20300		16.942	5.302	1	175570			5923	3012	3968	3998	8120	8120					0.10096405488093296
GLPPASKSCSW	11	Unmodified	_GLPPASKSCSW_					0	0	0		LPIN3|p.W346C|1|0.15|ENSG00000132793|chr20:41350333-41350333|G/C|missense_variant	LPIN3|p.W346C|1|0.15|ENSG00000132793|chr20:41350333-41350333|G/C|missense_variant	LPIN3|p.W346C|1|0.15|ENSG00000132793|chr20:41350333-41350333|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.26123046875	2	566.776416	1131.53828	0.21142	0.00011983	-0.39702	-0.00022502	-0.18559	-0.00010519	567.2782251030561	74.119	0.86243	74.119	73.798	74.661	0					71	31	4	0	0	0	0.30229	1	17627	17627		19.362	1.2156	1	386330			5924	7418	3969	3999	8121	8121					-0.022228047797852923
GLPPGYAVLA	10	Unmodified	_GLPPGYAVLA_					0	0	0		ENST00000267102.12_1_12:49495282-49496146:-|nuORF	ENST00000267102.12_1_12:49495282-49496146:-|nuORF	ENST00000267102.12_1_12:49495282-49496146:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2729797363281	2	479.273835	956.533118	0.029138	1.3965E-05	-1.0385	-0.00049771	-1.0093	-0.00048374	479.27316712030665	94.513	0.76975	94.551	94.272	95.042	0.038086					66	31	3	0	0	0	0.45239	1	23695	23695		4.3292	0	1	245340			5925	5906	3970	4000	8122	8122					0.053112594198864826
GLPWWAASF	9	Unmodified	_GLPWWAASF_					0	0	0			REV__ENST00000491892.1_1_22:20082246-20094325:+|nuORF	REV__ENST00000491892.1_1_22:20082246-20094325:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.2319946289062	2	517.758352	1033.50215	0.03062	1.5854E-05	-1.1119	-0.00057567	-1.0812	-0.00055982	517.7577195572663	33.789	0.53621	33.863	33.611	34.148	0.074322					31	22	2	0	0	0	0.20004	1	5375	5375		23.148	11.508	1	36639	+		5926	12153	3971	4001	8123	8123					-0.013258938943408793
GLPWWAASF	9	Unmodified	_GLPWWAASF_					0	0	0			REV__ENST00000491892.1_1_22:20082246-20094325:+|nuORF	REV__ENST00000491892.1_1_22:20082246-20094325:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	517.758352	1033.50215	0.021708	1.124E-05	-1.3973	-0.00072345	-1.3756	-0.00071222	517.7575342177879	33.856	0.46333	33.856	33.628	34.091	0	-0.0032848	-0.00015278	NaN	23.148	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45256	+		5927	12153	3971	4001							-0.013258938943408793
GLSDSLTTSTL	11	Unmodified	_GLSDSLTTSTL_					0	0	0		STRADA|p.P332L|1|0.5|ENSG00000266173|chr17:63704446-63704446|G/A|missense_variant	STRADA|p.P332L|1|0.5|ENSG00000266173|chr17:63704446-63704446|G/A|missense_variant	STRADA|p.P332L|1|0.5|ENSG00000266173|chr17:63704446-63704446|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7833251953125	2	547.782418	1093.55028	-0.0033339	-1.8263E-06	1.3586	0.00074421	1.3552	0.00074238	547.7832390115076	25.49	0.37688	25.585	25.438	25.815	0.094524					46	30	2	0	0	0	0.41369	1	2855	2855		1.1933	0.39971	1	24453			5928	13403	3972	4002	8124	8124					0.00725090444370835
GLSEALAELEE	11	Unmodified	_GLSEALAELEE_					0	0	0			REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7871704101562	2	580.787701	1159.56085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.31	1	115.31	114.81	115.81	0								0	0	0	0.33873	1	29415	29415		1.1933	0.12188	1		+		5929	12964	3973	4003	8125	8125					-0.012549269011969955
GLSHGGSTTF	10	Unmodified	_GLSHGGSTTF_					0	0	0			REV__ENSG00000170454|ENST00000252245|KRT75	REV__ENSG00000170454|ENST00000252245|KRT75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7459411621094	2	482.230156	962.445759	-0.074472	-3.5913E-05	-0.26517	-0.00012787	-0.33964	-0.00016378	482.2299898920668	36.017	0.33714	36.099	35.946	36.283	0.081715					18	12	2	0	0	0	0.44246	1	5967	5967		6.2058	0	1	23924	+	+	5930	7834	3974	4004	8126	8126					-0.036965665216712296
GLSPIDPCGI	10	Unmodified	_GLSPIDPCGI_					0	0	0			REV__ENSG00000283992|ENST00000317543|SLURP2	REV__ENSG00000283992|ENST00000317543|SLURP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2472229003906	2	486.24696	970.479368	0.31032	0.00015089	-0.029439	-1.4315E-05	0.28088	0.00013658	486.2468519988807	69.997	1.6211	69.997	69.379	71.001	0					106	58	3	0	0	0	0.33099	1	16587	16587		19.257	1.1106	1	231780	+		5931	11156	3975	4005	8127	8127					-0.007052810741242865
GMDEQYRQI	9	Unmodified	_GMDEQYRQI_					0	0	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2611694335938	2	570.26113	1138.50771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.342	1	29.342	28.842	29.842	0								0	0	0	0.29303	1	4102	4102		0.45834	0	1				5932	3784	3976	4006	8128	8128					-0.05600583164823547
GMEEKSLFEI	10	Unmodified	_GMEEKSLFEI_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.7877197265625	2	591.789189	1181.56383	0.10421	6.1668E-05	-2.4284	-0.0014371	-2.3242	-0.0013754	591.7873763673941	73.324	0.62405	73.324	73.174	73.798	0					42	22	2	0	0	0	0.11267	1	17434	17434		43.772	3.8227	1	1167200	+		5933	8329	3977	4007	8129	8129					-0.019693750480200833
GMEEKSLFEI	10	Unmodified	_GMEEKSLFEI_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	591.789189	1181.56383	0.10421	6.1668E-05	-2.4284	-0.0014371	-2.3242	-0.0013754	591.7873763673941	73.324	0.62405	73.324	73.174	73.798	0	-0.017012	0.00036211	NaN	43.772	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1167200	+		5934	8329	3977	4007							-0.019693750480200833
GMGRGRAAW	9	Unmodified	_GMGRGRAAW_					0	0	0			REV__ENST00000529919.5_1_11:57520766-57558858:+|nuORF	REV__ENST00000529919.5_1_11:57520766-57558858:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2410888671875	2	481.242878	960.471203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.67	1	100.71	100.21	101.21	0.042839								0	0	0	0.28631	1	25596	25596		1.8442	1.0506	1		+		5935	12348	3978	4008	8130	8130					-0.010613704802381108
GMKLSATVIF	10	Unmodified	_GMKLSATVIF_					0	0	0		nc|ENSG00000159733|Q9HCC9-5|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;ENSG00000159733|ENST00000290974|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8035278320312	2	533.801903	1065.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.7	1	65.767	65.267	66.267	0.066872								0	0	0	0.33443	1	14953	14953		6.7232	0.36906	1				5936	3739	3979	4009	8131	8131					0.059081442650494864
GMKWKKWS	8	Unmodified	_GMKWKKWS_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7656860351562	2	525.781305	1049.54806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.756	1	23.756	23.256	24.256	0								0	0	0	0.38822	1	2495	2495		0.79363	0.10326	1				5937	613	3980	4010	8132	8132					0.02526428016221871
GNAAFPKH	8	Unmodified	_GNAAFPKH_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.2193298339844	2	421.219395	840.424236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.177	1	16.177	15.677	16.677	0								0	0	0	0.38822	1	684	684		2.3027	0	1		+		5938	10001	3981	4011	8133	8133					-0.0023590675972400277
GNHSKSFE	8	Unmodified	_GNHSKSFE_					0	0	0			REV__ENST00000480279.1_1_9:108226543-108246709:+|nuORF	REV__ENST00000480279.1_1_9:108226543-108246709:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2098083496094	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.421	1	99.421	98.921	99.921	0								0	0	0	0.38822	1	25369	25369		2.5775	0	1		+		5939	12081	3982	4012	8134	8134					-0.05213122210182064
GNKKKLQQ	8	Unmodified	_GNKKKLQQ_					0	0	0			REV__ENSG00000163632|ENST00000295896|C3orf49	REV__ENSG00000163632|ENST00000295896|C3orf49	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2882385253906	2	472.287808	942.561064	-0.17512	-8.2705E-05	0.40148	0.00018962	0.22637	0.00010691	472.28788474190725	89.898	1.2848	89.932	89.65	90.935	0.034065					107	52	4	0	0	0	0.54097	1	22453	22453		0.69038	0	1	3238500	+		5940	9948	3983	4013	8135	8135					0.08748582400005489
GNQIGAKFWE	10	Unmodified	_GNQIGAKFWE_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7894897460938	2	575.288005	1148.56146	-0.25716	-0.00014794	-0.41547	-0.00023902	-0.67263	-0.00038696	575.2876707820159	40.978	0.41843	41.068	40.877	41.295	0.089642					23	15	2	0	0	0	0.45945	1	7465	7465		2.9952	0.69251	1	49655			5941	5708;5147;1434	3984	4014	8136	8136					-0.006880426708221421
GNQIGAKFWE	10	Unmodified	_GNQIGAKFWE_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	575.288005	1148.56146	-0.42476	-0.00024436	-0.46866	-0.00026961	-0.89342	-0.00051397	575.2878356418536	41.074	0.47233	41.074	40.881	41.354	0	0.0029854	-4.3563E-05	NaN	2.9952	22	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43126			5942	5708;5147;1434	3984	4014							-0.006880426708221421
GNRGRNRQ	8	Unmodified	_GNRGRNRQ_					0	0	0		ENST00000573951.1_1_16:3313772-3314576:+|nuORF	ENST00000573951.1_1_16:3313772-3314576:+|nuORF	ENST00000573951.1_1_16:3313772-3314576:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2586975097656	2	479.257905	956.501258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.237	1	31.311	30.811	31.811	0.073782								0	0	0	0.38822	1	4542	4542		0.69038	0	1				5943	7199	3985	4015	8137	8137					0.021267045093168235
GNRQFHCTL	9	Unmodified	_GNRQFHCTL_					0	0	0			REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF	REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.258056640625	2	538.258725	1074.5029	-0.14082	-7.58E-05	-0.82293	-0.00044295	-0.96375	-0.00051875	538.2582079660648	44.878	0.63873	44.878	44.632	45.271	0					39	22	2	0	0	0	0.24021	1	8750	8750		13.906	2.4113	1	70055	+		5944	11545	3986	4016	8138	8138					-0.03137422516942934
GNRQFHCTL	9	Unmodified	_GNRQFHCTL_					0	0	0			REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF	REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	538.258725	1074.5029	-0.14082	-7.58E-05	-0.82293	-0.00044295	-0.96375	-0.00051875	538.2582079660648	44.878	0.63873	44.878	44.632	45.271	0	0.013455	0.00037318	NaN	13.906	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70055	+		5945	11545	3986	4016							-0.03137422516942934
GPAAHHLNNP	10	Unmodified	_GPAAHHLNNP_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2567138671875	2	514.25704	1026.49953	-0.058241	-2.9951E-05	-1.0948	-0.00056298	-1.153	-0.00059294	514.2563103133008	30.172	0.51738	30.247	29.987	30.504	0.075405					73	31	3	0	0	0	0.45627	1	4186	4186		3.5965	1.9439	1	59734			5946	1840	3987	4017	8139	8139					-0.012663492992942338
GPAPHLRK	8	Unmodified	_GPAPHLRK_					0	0	0		nc|ENSG00000078487|Q9H0M4-3|ZCWPW1;ENST00000490089.1_1_7:99998800-100014813:-|nuORF;nc|ENSG00000078487|Q9H0M4-5|ZCWPW1	nc|ENSG00000078487|Q9H0M4-3|ZCWPW1	nc|ENSG00000078487|Q9H0M4-3|ZCWPW1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.263671875	2	438.264136	874.51372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.105	1	46.105	45.605	46.605	0								0	0	0	0.38822	1	9137	9137		0.79363	0	1				5947	6802	3988	4018	8140	8140					0.07144347919643224
GPDARPPYL	9	Unmodified	_GPDARPPYL_					0	0	0		nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2560729980469	2	493.258717	984.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.636	1	27.636	27.136	28.136	0								0	0	0	0.21527	1	3604	3604		15.847	2.8047	1				5948	5335	3989	4019	8141	8141					0.010009007546955218
GPDHMKEFEI	10	Unmodified	_GPDHMKEFEI_					0	0	0		tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7792358398438	2	601.779156	1201.54376	0.47582	0.00028634	0.0076707	4.6161E-06	0.4835	0.00029096	601.7790726975923	47.007	1.9402	47.09	46.599	48.539	0.083096					182	80	3	0	0	0	0.30966	1	9371	9371		21.537	1.0834	1	327090			5949	13688	3990	4020	8142	8142					-0.04895125987945903
GPDPKAYQL	9	Unmodified	_GPDPKAYQL_					0	0	0		ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7574768066406	2	494.758549	987.502546	-0.38991	-0.00019291	-0.38472	-0.00019034	-0.77463	-0.00038325	494.7581231870464	41.49	0.54841	41.49	41.225	41.773	0					43	19	3	0	0	0	0.24021	2	7711	7711;7761		13.906	0.86358	1	106800			5950	5046	3991	4021	8143;8144	8143					0.008294810348388637
GPDPKAYQL	9	Unmodified	_GPDPKAYQL_					0	0	0		ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7584533691406	2	494.758549	987.502546	-0.25818	-0.00012774	-0.44835	-0.00022182	-0.70653	-0.00034956	494.7582456201503	41.423	0.49478	41.512	41.265	41.76	0.089764					32	19	2	0	0	0	0.20358	2	7606	7562;7606		18.146	1.0335	1	97906			5951	5046	3991	4021	8145;8146	8146					0.008294810348388637
GPEALSTVNV	10	Unmodified	_GPEALSTVNV_					0	0	0			REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF	REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7481994628906	2	493.761289	985.508025	-0.10545	-5.207E-05	-0.44911	-0.00022175	-0.55457	-0.00027382	493.76102355885035	25.066	0.26174	25.066	24.902	25.164	0					26	19	2	0	0	0	0.45794	1	2846	2846		3.2813	0.70383	1	18529	+		5952	12233	3992	4022	8147	8147					0.014691598266722394
GPEVTRQQT	9	Unmodified	_GPEVTRQQT_					0	0	0		nc|ENSG00000024526|Q5TB30-2|DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1	nc|ENSG00000024526|Q5TB30-2|DEPDC1	nc|ENSG00000024526|Q5TB30-2|DEPDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7809753417969	2	508.261988	1014.50942	-0.28055	-0.00014259	0.035699	1.8145E-05	-0.24485	-0.00012445	508.2617735520705	23.929	0.37594	23.929	23.782	24.158	0					50	33	2	0	0	0	0.3354	1	2561	2561		2.0598	0	1	38565			5953	488	3993	4023	8148	8148					0.002747939154346568
GPFAALVLIEE	11	Unmodified	_GPFAALVLIEE_					0	0	0			REV__ENST00000544682.5_1_6:13961772-13977158:+|nuORF	REV__ENST00000544682.5_1_6:13961772-13977158:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2764892578125	2	579.823889	1157.63323	0.27024	0.00015669	-2.3729	-0.0013759	-2.1027	-0.0012192	579.822762691268	52.52	0.27909	52.52	52.305	52.584	0					13	9	3	0	0	0	0.31076	1	11047	11047		1.3295	0	1	69861	+		5954	12138	3994	4024	8149	8149					0.06071451963043728
GPHASEPQL	9	Unmodified	_GPHASEPQL_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.23260498046875	2	468.232699	934.450845	-0.20154	-9.437E-05	0.030598	1.4327E-05	-0.17095	-8.0042E-05	468.232618558113	31.397	0.60508	31.397	31.215	31.82	0					56	26	3	0	0	0	0.27332	1	4745	4745		10.074	0	1	125030			5955	2478	3995	4025	8150	8150					-0.01900262659046348
GPHASEPQL	9	Unmodified	_GPHASEPQL_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.232666015625	2	468.232699	934.450845	-0.30272	-0.00014174	0.23371	0.00010943	-0.069015	-3.2315E-05	468.2327581166404	31.372	0.75604	31.445	31.244	32	0.07378					63	35	3	0	0	0	0.14091	1	4574	4574		25.399	10.561	1	115890			5956	2478	3995	4025	8151	8151					-0.01900262659046348
GPHSPDPLL	9	Unmodified	_GPHSPDPLL_					0	0	0		nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.74530029296875	2	466.745442	931.476331	-0.15064	-7.031E-05	-0.17949	-8.3778E-05	-0.33013	-0.00015409	466.7453353106717	43.43	1.3208	43.43	43.149	44.47	0					111	46	4	0	0	0	0.0046476	3	8336	8294;8336;8382		85.357	37.011	1	2128100			5957	4781	3996	4026	8152;8153;8154	8153					0.00785211863387758
GPHSPDPLL	9	Unmodified	_GPHSPDPLL_					0	0	0		nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.7452697753906	2	466.745442	931.476331	-0.24245	-0.00011316	0.218	0.00010175	-0.024452	-1.1413E-05	466.7454869702616	43.325	1.2873	43.415	43.162	44.45	0.089764					104	45	4	0	0	0	0.011655	2	8188	8141;8188		64.236	28.192	1	1744700			5958	4781	3996	4026	8155;8156	8156					0.00785211863387758
GPIKPEPIL	9	Unmodified	_GPIKPEPIL_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.29742431640625	2	482.29731	962.580068	0.024507	1.182E-05	0.39654	0.00019125	0.42105	0.00020307	482.2973603076933	50.43	0.42228	50.504	50.319	50.741	0.07312					26	14	2	0	0	0	0.15482	1	10317	10317		23.79	5.6434	1	158380			5959	133	3997	4027	8157	8157					0.09728118971031563
GPIKPEPIL	9	Unmodified	_GPIKPEPIL_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	482.29731	962.580068	-0.078812	-3.8011E-05	0.35313	0.00017031	0.27431	0.0001323	482.2973349077978	50.513	0.44258	50.513	50.32	50.762	0	0.0047308	-1.7204E-05	NaN	23.79	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188910			5960	133	3997	4027							0.09728118971031563
GPKDKRLST	9	Unmodified	_GPKDKRLST_					0	0	0			REV__ENST00000361337.2_1_20:39751926-39752103:+|nuORF	REV__ENST00000361337.2_1_20:39751926-39752103:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2908630371094	2	501.290548	1000.56654	0.30809	0.00015444	0.07228	3.6233E-05	0.38037	0.00019067	501.2904433310158	78.764	2.4673	78.764	77.555	80.022	0					159	85	3	0	0	0	0.32375	1	18984	18984		3.5965	0.60125	1	917630	+		5961	11542	3998	4028	8158	8158					0.06628261191792717
GPKGAVGRAG	10	Unmodified	_GPKGAVGRAG_					0	0	0			REV__nc|ENSG00000060718|P12107-4|COL11A1	REV__nc|ENSG00000060718|P12107-4|COL11A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2510070800781	2	435.251226	868.487899	0.26821	0.00011674	-0.35281	-0.00015356	-0.084598	-3.6821E-05	435.2509318002366	74.024	1.9239	74.072	73.437	75.361	0.048538					173	70	3	0	0	0	0.45794	1	17762	17762		3.2813	3.2813	1	602470	+		5962	8080	3999	4029	8159	8159					0.04839453677379879
GPKVQSARA	9	Unmodified	_GPKVQSARA_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.26458740234375	2	457.264333	912.514114	0.50293	0.00022997	-0.22184	-0.00010144	0.28109	0.00012853	457.26415319391543	74.365	1.5564	74.365	74.095	75.652	0					109	58	3	0	0	0	0.32614	1	17814	17814		3.2813	0.39209	1	276670	+		5963	9629	4000	4030	8160	8160					0.054357228488470355
GPLGPDVRH	9	Unmodified	_GPLGPDVRH_					0	0	0			REV__ENST00000445551.1_1_1:47898708-47899005:-|nuORF	REV__ENST00000445551.1_1_1:47898708-47899005:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2557067871094	2	474.256508	946.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.819	1	24.915	24.415	25.415	0.096073								0	0	0	0.28631	1	2669	2669		1.8442	0	1		+		5964	11902	4001	4031	8161	8161					0.023074363318073665
GPPDRDPTL	9	Unmodified	_GPPDRDPTL_					0	0	0		SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant;ENSG00000126461|ENST00000360565|SCAF1	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.24566650390625	2	484.245806	966.47706	-0.37488	-0.00018153	0.09655	4.6754E-05	-0.27833	-0.00013478	484.24580703528784	32.808	0.67546	32.808	32.548	33.223	0					50	30	2	0	0	0	0.19307	2	5134	5092;5134		19.362	9.818	1	71778			5965	2339	4002	4032	8162;8163	8163					-0.007519934875631407
GPPDRDPTL	9	Unmodified	_GPPDRDPTL_					0	0	0		SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant;ENSG00000126461|ENST00000360565|SCAF1	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.24578857421875	2	484.245806	966.47706	-0.31143	-0.00015081	0.76769	0.00037175	0.45625	0.00022094	484.24588989610214	32.752	1.3081	32.826	32.456	33.764	0.07378					117	58	3	0	0	0	0.28472	2	4997	4955;4997		8.7454	2.5396	1	82835			5966	2339	4002	4032	8164;8165	8165					-0.007519934875631407
GPPGGAWHNM	10	Unmodified	_GPPGGAWHNM_					0	0	0		OSGIN2|p.S142Tfs*27|1|0.07|ENSG00000164823|chr8:89921106-89921107|-/ACTATTCT|frameshift_variant;OSGIN2|p.F143Yfs*31|1|0.06|ENSG00000164823|chr8:89921108-89921109|-/CTACTGGCTGCAGCATCTGAGAT|frameshift_variant;nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	OSGIN2|p.S142Tfs*27|1|0.07|ENSG00000164823|chr8:89921106-89921107|-/ACTATTCT|frameshift_variant	OSGIN2|p.S142Tfs*27|1|0.07|ENSG00000164823|chr8:89921106-89921107|-/ACTATTCT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2064819335938	2	512.226894	1022.43923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.665	1	30.74	30.24	31.24	0.075403								0	0	0	0.33892	1	4371	4371		1.4819	0.68827	1				5967	4034	4003	4033	8166	8166					-0.07108782954037451
GPPHNSNF	8	Unmodified	_GPPHNSNF_					0	0	0		ENST00000532308.5_1_8:144696774-144699659:-|nuORF;ENST00000531473.5_1_8:144696774-144698909:-|nuORF;ENSG00000104522|ENST00000425753|GFUS	ENST00000532308.5_1_8:144696774-144699659:-|nuORF	ENST00000532308.5_1_8:144696774-144699659:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.19842529296875	2	435.198659	868.382765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.43	1	106.45	105.95	106.95	0.025711								0	0	0	0.38822	1	27247	27247		0.79363	0	1				5968	1417	4004	4034	8167	8167					-0.056690875190497536
GPPPRATR	8	Unmodified	_GPPPRATR_					0	0	0		ENSG00000047648|ENST00000337414|ARHGAP6;nc|ENSG00000047648|O43182-3|ARHGAP6;ENST00000489330.6_1_X:11166772-11683098:-|nuORF;nc|ENSG00000047648|O43182-2|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.2462158203125	2	426.245944	850.477334	0.15305	6.5239E-05	0.056677	2.4158E-05	0.20973	8.9397E-05	426.2459288531431	82.623	1.4446	82.645	81.969	83.414	0.021744					113	51	5	0	0	0	0.53858	1	20032	20032		2.3027	1.5091	1	2541300			5969	562	4005	4035	8168	8168					0.0461147102294035
GPQEEGGGCWS	11	Unmodified	_GPQEEGGGCWS_					0	0	0		ENST00000524482.5_1_11:64893377-64893431:+|nuORF	ENST00000524482.5_1_11:64893377-64893431:+|nuORF	ENST00000524482.5_1_11:64893377-64893431:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7122192382812	2	553.714013	1105.41347	-0.0097777	-5.4141E-06	-1.9603	-0.0010855	-1.9701	-0.0010909	553.7128352957111	40.806	0.317	40.895	40.771	41.088	0.089642					16	12	2	0	0	0	0.41369	1	7405	7405		1.1933	0.39971	1	25503			5970	6980	4006	4036	8169	8169					-0.13501721986949633
GPQLRRGPRAS	11	Unmodified	_GPQLRRGPRAS_					0	0	0			REV__ENST00000312734.8_1_2:27333768-27341891:-|nuORF	REV__ENST00000312734.8_1_2:27333768-27341891:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8565673828125	2	597.844345	1193.67414	0.12735	7.6134E-05	-2.9525	-0.0017651	-2.8252	-0.001689	597.8429078359317	89.192	0.26733	89.224	89.088	89.355	0.032265					12	9	2	0	0	0	0.31023	1	22137	22137		8.1555	1.4324	1	48160	+		5971	11376	4007	4037	8170	8170					0.08504650845884498
GPQQQHWAI	9	Unmodified	_GPQQQHWAI_					0	0	0			REV__nc|ENSG00000211639|A0A075B6I1|IGLV4-60	REV__nc|ENSG00000211639|A0A075B6I1|IGLV4-60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7669677734375	2	532.76724	1063.51993	0.72662	0.00038712	-1.0533	-0.00056117	-0.3267	-0.00017405	532.7664864830103	66.001	0.79625	66.068	65.874	66.67	0.066872					60	30	3	0	0	0	0.29576	1	15163	15163		7.2892	0.93513	1	518290	+		5972	12877	4008	4038	8171	8171					-0.009291786394896917
GPSAEEDTPI	10	Unmodified	_GPSAEEDTPI_					0	0	0			REV__ENST00000431705.1_1_3:48885788-48886603:+|nuORF	REV__ENST00000431705.1_1_3:48885788-48886603:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2322082519531	2	508.232561	1014.45057	-0.17846	-9.0698E-05	0.0002374	1.2065E-07	-0.17822	-9.0578E-05	508.23258969730637	43.878	0.77612	43.878	43.521	44.298	0					46	27	2	0	0	0	0.38912	1	8459	8459		13.042	1.4022	1	85617	+		5973	11852	4009	4039	8172	8172					-0.056077271695585296
GPSENDPNL	9	Unmodified	_GPSENDPNL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7116394042969	2	471.711796	941.40904	-0.059428	-2.8033E-05	0.021394	1.0092E-05	-0.038035	-1.7941E-05	471.7117219557933	35.799	0.48742	35.799	35.617	36.105	0					40	18	3	0	0	0	0.11198	2	6018	6018;6061		29.841	15.002	1	70499			5974	1115	4010	4040	8173;8174	8173					-0.0640086313824213
GPSENDPNL	9	Unmodified	_GPSENDPNL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7116394042969	2	471.711796	941.40904	-0.10366	-4.8895E-05	-0.048839	-2.3038E-05	-0.15249	-7.1933E-05	471.71176042977555	35.73	0.48289	35.809	35.596	36.078	0.078827					29	17	2	0	0	0	0.28919	2	5872	5872;5920		8.1555	4.2111	1	71107			5975	1115	4010	4040	8175;8176	8175					-0.0640086313824213
GPSEVEQQL	9	Unmodified	_GPSEVEQQL_					0	0	0		ENST00000570077.1_1_15:62538426-62538813:-|nuORF;nc|ENSG00000167110|Q08379-2|GOLGA2;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2	ENST00000570077.1_1_15:62538426-62538813:-|nuORF	ENST00000570077.1_1_15:62538426-62538813:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.74261474609375	2	493.743096	985.47164	-0.043934	-2.1692E-05	-0.43697	-0.00021575	-0.4809	-0.00023744	493.7428931075198	44.12	0.47162	44.12	43.887	44.359	0					28	15	2	0	0	0	0.010235	1	8536	8536		66.457	24.617	1	139740			5976	4200	4011	4041	8177	8177					-0.021677170700399984
GPSEVEQQL	9	Unmodified	_GPSEVEQQL_					0	0	0		ENST00000570077.1_1_15:62538426-62538813:-|nuORF;nc|ENSG00000167110|Q08379-2|GOLGA2;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2	ENST00000570077.1_1_15:62538426-62538813:-|nuORF	ENST00000570077.1_1_15:62538426-62538813:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.74298095703125	2	493.743096	985.47164	0.073453	3.6267E-05	0.25775	0.00012726	0.33121	0.00016353	493.74311768848025	44.048	0.52164	44.137	43.927	44.449	0.088924					25	17	2	0	0	0	0.032194	1	8365	8365		49.554	21.925	1	116650			5977	4200	4011	4041	8178	8178					-0.021677170700399984
GPSLPWPPVL	10	Unmodified	_GPSLPWPPVL_					0	0	0			REV__ENST00000356487.9_2_19:34856112-34856244:+|nuORF	REV__ENST00000356487.9_2_19:34856112-34856244:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.3189086914062	2	531.80276	1061.59097	0.39892	0.00021215	-0.019676	-1.0464E-05	0.37925	0.00020168	531.8025209977276	71.442	0.74623	71.442	71.037	71.783	0					38	25	3	0	0	0	0.3198	1	16825	16825		20.454	6.9457	1	315370	+		5978	11505	4012	4042	8179	8179					0.06263521345317713
GQCRQWEYF	9	Unmodified	_GQCRQWEYF_					0	0	0			REV__ENSG00000183624|ENST00000383463|HMCES	REV__ENSG00000183624|ENST00000383463|HMCES	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.305908203125	2	608.76384	1215.51313	0.58392	0.00035547	2.043	0.0012437	2.6269	0.0015992	608.7649024178281	79.36	0.40511	79.36	79.157	79.562	0					25	13	2	0	0	0	0.25376	1	19309	19309		6.2058	0	1	110030	+		5979	10604	4013	4043	8180	8180					-0.08600859582384146
GQCYYNEFML	10	Unmodified	_GQCYYNEFML_					0	0	0			REV__ENST00000262919.9_1_20:3557573-3559301:+|nuORF	REV__ENST00000262919.9_1_20:3557573-3559301:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.1763610839844	3	423.175587	1266.50493	0.23376	9.8922E-05	1.8331	0.00077571	2.0668	0.00087463	423.17616832965604	86.635	0.38966	86.635	86.467	86.857	0					36	14	3	0	0	0	0.43325	2	21520	21476;21520		7.9454	2.162	1	665490	+		5980	11238	4014	4044	8181;8182	8182					-0.11766174614012925
GQCYYNEFML	10	Unmodified	_GQCYYNEFML_					0	0	0			REV__ENST00000262919.9_1_20:3557573-3559301:+|nuORF	REV__ENST00000262919.9_1_20:3557573-3559301:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.5108642578125	3	423.175587	1266.50493	0.23376	9.8922E-05	1.8331	0.00077571	2.0668	0.00087463	423.17616832965604	86.635	0.38966	86.635	86.467	86.857	0					36	14	3	0	0	0	0.31786	1	21476	21476		5.0475	1.9753	1	665490	+		5981	11238	4014	4044	8183	8183					-0.11766174614012925
GQDLCLPSPS	10	Unmodified	_GQDLCLPSPS_					0	0	0			REV__ENST00000328916.7_1_12:7167858-7168176:+|nuORF	REV__ENST00000328916.7_1_12:7167858-7168176:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7392578125	2	508.739499	1015.46445	-0.24912	-0.00012674	0.044919	2.2852E-05	-0.2042	-0.00010389	508.7394589953189	24.854	0.92788	24.854	24.62	25.548	0					193	70	4	0	0	0	0.35104	1	2845	2845		17.113	4.0704	1	169530	+		5982	11418	4015	4045	8184	8184					-0.04266772942116859
GQDLVAVMNAN	11	Unmodified	_GQDLVAVMNAN_					0	0	0			REV__ENSG00000135776|ENST00000344517|ABCB10	REV__ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.29736328125	2	566.27678	1130.53901	0.33466	0.00018951	-1.0181	-0.00057652	-0.68342	-0.00038701	567.2782711033525	100.79	0.64857	100.79	100.32	100.97	0					83	39	3	0	0	0	0.38555	1	25734	25734		7.609	0.31972	1	97242	+		5983	9218	4016	4046	8185	8185					-0.02104010130756251
GQDRHQRS	8	Unmodified	_GQDRHQRS_					0	0	0			REV__ENST00000435556.7_2_1:2452243-2452653:-|nuORF	REV__ENST00000435556.7_2_1:2452243-2452653:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.70697021484375	2	492.241921	982.469289	-0.040889	-2.0127E-05	2.8033	0.0013799	2.7624	0.0013598	492.243616114048	32.508	0.39767	32.582	32.421	32.819	0.07378					28	22	2	0	0	0	0.35759	1	4887	4887		13.508	0	1	23850	+		5984	11658	4017	4047	8186	8186					-0.02264707964468471
GQEQDELSF	9	Unmodified	_GQEQDELSF_					0	0	0		ENSG00000124507|ENST00000244458|PACSIN1	ENSG00000124507|ENST00000244458|PACSIN1	ENSG00000124507|ENST00000244458|PACSIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7303466796875	2	526.730186	1051.44582	0.17737	9.3427E-05	0.73385	0.00038654	0.91123	0.00047997	526.7302681432931	56.848	0.46461	56.848	56.6	57.065	0					40	17	3	0	0	0	0.083124	1	12388	12388		36.127	4.8587	1	211560			5985	2257	4018	4048	8187	8187					-0.07784611312354173
GQEQDELSF	9	Unmodified	_GQEQDELSF_					0	0	0		ENSG00000124507|ENST00000244458|PACSIN1	ENSG00000124507|ENST00000244458|PACSIN1	ENSG00000124507|ENST00000244458|PACSIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.730712890625	2	526.730186	1051.44582	0.24419	0.00012862	0.43322	0.00022819	0.67741	0.00035681	526.7303021158405	56.772	0.46426	56.838	56.626	57.091	0.066452					27	16	2	0	0	0	0.083124	1	12231	12231		36.127	4.8587	1	221190			5986	2257	4018	4048	8188	8188					-0.07784611312354173
GQIMFLTGM	9	Unmodified	_GQIMFLTGM_					0	0	0		ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7536315917969	2	499.245906	996.477259	0.035307	1.7627E-05	-1.1477	-0.00057298	-1.1124	-0.00055536	499.2452668583116	43.821	0.29675	43.91	43.767	44.064	0.088921					16	10	3	0	0	0	0.25644	1	8339	8339		3.9444	1.3669	1	52199			5987	5197	4019	4049	8189	8189					-0.021120330835856294
GQKQWQSYF	9	Unmodified	_GQKQWQSYF_					0	0	0		ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI	ENSG00000173611|ENST00000336505|SCAI	ENSG00000173611|ENST00000336505|SCAI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.280517578125	2	586.28018	1170.54581	-0.071017	-4.1636E-05	0.095413	5.5938E-05	0.024396	1.4303E-05	586.2803681486611	40.693	0.28172	40.693	40.505	40.787	0					11	9	2	0	0	0	0.33849	1	7515	7515		1.6526	0	1	30070			5988	4552	4020	4050	8190	8190					-0.03264329187868498
GQLEDCVVL	9	Unmodified	_GQLEDCVVL_					0	0	0		LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.24188232421875	2	488.244418	974.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.664	1	39.664	39.164	40.164	0								0	0	0	0.26267	1	7192	7192		6.7232	0	1				5989	600	4021	4051	8191	8191					-0.013975849367511728
GQLFDTALL	9	Unmodified	_GQLFDTALL_					0	0	0			REV__ENSG00000275591|ENST00000618742|XKR5	REV__ENSG00000275591|ENST00000618742|XKR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.26861572265625	2	489.26875	976.522947	0.26771	0.00013098	0.11367	5.5613E-05	0.38137	0.00018659	489.26872919854713	71.485	0.76366	71.485	71.208	71.972	0					72	26	4	0	0	0	0.15282	1	16976	16976		24.021	2.2739	1	2517700	+		5990	11136	4022	4052	8192	8192					0.033746516946507654
GQLVDPDPRP	10	Unmodified	_GQLVDPDPRP_					0	0	0			REV__ENSG00000166343|ENST00000299432|MSS51	REV__ENSG00000166343|ENST00000299432|MSS51	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7521362304688	2	547.285463	1092.55637	-0.11372	-6.2236E-05	-0.88635	-0.00048509	-1.0001	-0.00054733	547.2857920996258	27.727	0.23141	27.727	27.627	27.859	0					23	15	2	0	0	0	0.31841	1	3644	3644		1.3295	0.5359	1	16154	+		5991	10073	4023	4053	8193	8193					0.01379653466574382
GQNCLSSEF	9	Unmodified	_GQNCLSSEF_					0	0	0		ENST00000491511.6_1_3:101500962-101501088:+|nuORF	ENST00000491511.6_1_3:101500962-101501088:+|nuORF	ENST00000491511.6_1_3:101500962-101501088:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7071533203125	2	492.708199	983.401846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.814	1	33.888	33.388	34.388	0.074322								0	0	0	0.28724	1	5311	5311		1.6526	0.85899	1				5992	6809	4024	4054	8194	8194					-0.09051919010300935
GQPHDHKH	8	Unmodified	_GQPHDHKH_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;ENST00000483298.1_1_10:64953077-64954292:-|nuORF	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2272033691406	2	478.228282	954.442011	-0.28182	-0.00013477	-1.3004	-0.00062191	-1.5823	-0.00075668	478.22755742577414	23.874	0.30881	23.974	23.865	24.174	0.099739					51	28	2	0	0	0	0.54097	1	2397	2397		0.69038	0.69038	1	32475			5993	4475	4025	4055	8195	8195					-0.03703191504860115
GQPKYQILL	9	Unmodified	_GQPKYQILL_					0	0	0		L1MEd_dup14838|chr11:12977557-12977725:+|1.077120990270905|0.0943699703655045|3.51|509.0|8|1|anti-sense	L1MEd_dup14838|chr11:12977557-12977725:+|1.077120990270905|0.0943699703655045|3.51|509.0|8|1|anti-sense	L1MEd_dup14838|chr11:12977557-12977725:+|1.077120990270905|0.0943699703655045|3.51|509.0|8|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.313720703125	2	530.313492	1058.61243	0.46352	0.00024581	-0.023131	-1.2267E-05	0.44039	0.00023354	530.3133669213204	73.922	1.0285	73.97	73.645	74.673	0.048538					95	37	4	0	0	0	0.25979	1	17505	17505		11.64	0	1	1175300			5994	7388	4026	4056	8196	8196					0.08546906374044738
GQPNSALF	8	Unmodified	_GQPNSALF_					0	0	0		ENST00000320912.8_1_4:6644107-6644191:+|nuORF	ENST00000320912.8_1_4:6644107-6644191:+|nuORF	ENST00000320912.8_1_4:6644107-6644191:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.2029113769531	2	417.211235	832.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.197	1	84.218	83.718	84.718	0.021744								0	0	0	0.38822	1	20580	20580		5.7604	0	1				5995	6030	4027	4057	8197	8197					-0.014990327164923656
GQPRKYFQ	8	Unmodified	_GQPRKYFQ_					0	0	0			REV__sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1	REV__sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2706909179688	2	512.272158	1022.52976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.116	1	14.116	13.616	14.616	0								0	0	0	0.38822	1	320	320		0.69038	0	1		+		5996	12996	4028	4058	8198	8198					0.01940009365887363
GQQCFGFQ	8	Unmodified	_GQQCFGFQ_					0	0	0			REV__nc|ENSG00000135424|Q13683-13|ITGA7	REV__nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.22412109375	2	457.694895	913.375237	-0.028136	-1.2878E-05	0.76835	0.00035167	0.74022	0.00033879	457.6952563098208	28.711	0.45713	28.711	28.552	29.009	0					39	22	2	0	0	0	0.3576	1	3909	3909		2.3027	0	1	21839	+		5997	9204	4029	4059	8199	8199					-0.08491563110976585
GQQKQNSVSK	10	Unmodified	_GQQKQNSVSK_					0	0	0		AluSp_dup17164|chr6:42889159-42889460:+|1.0383190722797302|0.1877517114460719|2.47|521.0|11|3|sense	AluSp_dup17164|chr6:42889159-42889460:+|1.0383190722797302|0.1877517114460719|2.47|521.0|11|3|sense	AluSp_dup17164|chr6:42889159-42889460:+|1.0383190722797302|0.1877517114460719|2.47|521.0|11|3|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2938232421875	2	552.293819	1102.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.77	1	103.77	103.27	104.27	0								0	0	0	0.33762	1	26682	26682		2.9952	0.69251	1				5998	28	4030	4060	8200	8200					0.025901543525151283
GQRTLHSY	8	Unmodified	_GQRTLHSY_					0	0	0			REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.24652099609375	2	481.246141	960.477728	-0.31496	-0.00015157	0.85357	0.00041078	0.53861	0.0002592	481.2466747913516	107.26	0.41117	107.26	107.04	107.45	0					65	37	2	0	0	0	0.53118	2	27681	27634;27681		7.2892	2.5332	1	205990	+		5999	9460	4031	4061	8201;8202	8202					-0.004091540478725619
GQRTLHSY	8	Unmodified	_GQRTLHSY_					0	0	0			REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.24554443359375	2	481.246141	960.477728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.54	1	107.56	107.06	108.06	0.022224								0	0	0	0.38822	1	27554	27554		3.9444	1.3669	1		+		6000	9460	4031	4061	8203	8203					-0.004091540478725619
GQRTLHSY	8	Unmodified	_GQRTLHSY_					0	0	0			REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.24658203125	2	481.246141	960.477728	0.0088353	4.2519E-06	-0.15725	-7.5676E-05	-0.14842	-7.1424E-05	481.24632003079427	107.19	0.34535	107.22	107.06	107.4	0.025711					75	33	3	0	0	0	0.3576	1	27443	27443		3.9444	1.8846	1	151450	+		6001	9460	4031	4061	8204	8204					-0.004091540478725619
GQTDLQVPK	9	Unmodified	_GQTDLQVPK_					0	0	0		ENST00000548322.1_1_14:23424385-23424601:+|nuORF	ENST00000548322.1_1_14:23424385-23424601:+|nuORF	ENST00000548322.1_1_14:23424385-23424601:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.22393798828125	2	493.269281	984.52401	0.0022753	1.1223E-06	0.95161	0.0004694	0.95388	0.00047052	493.26903636115907	32.702	0.43108	32.775	32.586	33.017	0.07378					32	20	2	0	0	0	0.2446	1	5033	5033		11.64	0	1	39081			6002	7086	4032	4062	8205	8205					0.031128660635772576
GQYSHITR	8	Unmodified	_GQYSHITR_					0	0	0			REV__nc|ENSG00000150527|Q96PC5-6|MIA2	REV__nc|ENSG00000150527|Q96PC5-6|MIA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2469177246094	2	481.246141	960.477728	-0.31496	-0.00015157	0.85357	0.00041078	0.53861	0.0002592	481.2466747913516	107.26	0.41117	107.26	107.04	107.45	0					65	37	2	0	0	0	0.3576	1	27645	27645		1.8442	1.5372	1	205990	+		6003	9628	4033	4063	8206	8206					-0.004091540478725619
GRALHRRRQ	9	Unmodified	_GRALHRRRQ_					0	0	0		ENST00000368061.2_1_1:160388904-160390242:+|nuORF	ENST00000368061.2_1_1:160388904-160390242:+|nuORF	ENST00000368061.2_1_1:160388904-160390242:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.345703125	2	575.344846	1148.67514	0.5499	0.00031638	0.88006	0.00050634	1.43	0.00082272	575.3452551411871	92.589	0.87337	92.625	92.286	93.159	0.03653					86	32	4	0	0	0	0.32112	2	23126	23126;23176		3.9444	3.9444	1	598240			6004	6182	4034	4064	8207;8208	8207					0.10674910005445781
GRAQLLGH	8	Unmodified	_GRAQLLGH_					0	0	0			REV__nc|ENSG00000107789|Q9UNW1-3|MINPP1	REV__nc|ENSG00000107789|Q9UNW1-3|MINPP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.2456970214844	2	426.245944	850.477334	0.15305	6.5239E-05	0.056677	2.4158E-05	0.20973	8.9397E-05	426.2459288531431	82.623	1.4446	82.645	81.969	83.414	0.021744					113	51	5	0	0	0	0.54097	1	20260	20260		0.69038	0	1	2541300	+		6005	8599	4035	4065	8209	8209					0.04611471022963087
GRARWLKP	8	Unmodified	_GRARWLKP_					0	0	0		ENST00000592624.1_1_19:1242319-1242811:+|nuORF	ENST00000592624.1_1_19:1242319-1242811:+|nuORF	ENST00000592624.1_1_19:1242319-1242811:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7268981933594	2	492.29851	982.582468	-0.10815	-5.324E-05	-1.0535	-0.00051863	-1.1616	-0.00057187	492.29804577932435	28.035	0.25798	28.117	27.998	28.256	0.082134					23	14	2	0	0	0	0.3576	1	3612	3612		5.2307	0	1	26575			6006	7271	4036	4066	8210	8210					0.09048012219363955
GRDFSQSSHLL	11	Unmodified	_GRDFSQSSHLL_					0	0	0		nc|ENSG00000131849|P52740-2|ZNF132;ENSG00000131849|ENST00000254166|ZNF132	nc|ENSG00000131849|P52740-2|ZNF132	nc|ENSG00000131849|P52740-2|ZNF132	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8135986328125	2	623.812376	1245.6102	0.064095	3.9983E-05	2.8189	0.0017584	2.883	0.0017984	623.8144368476948	76.382	0.4499	76.382	76.253	76.702	0					21	15	2	0	0	0	0.37393	1	18347	18347		9.544	1.6338	1	317900			6007	2550	4037	4067	8211	8211					-0.002781741016860906
GRDRGRNAF	9	Unmodified	_GRDRGRNAF_					0	0	0		ENST00000353047.10_1_8:11702534-11702627:-|nuORF	ENST00000353047.10_1_8:11702534-11702627:-|nuORF	ENST00000353047.10_1_8:11702534-11702627:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7730102539062	2	524.773388	1047.53222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.682	1	98.724	98.224	99.224	0.041931								0	0	0	0.24643	1	24991	24991		10.074	0.72649	1				6008	6108	4038	4068	8212	8212					0.010358578235582172
GRDYELYKY	9	Unmodified	_GRDYELYKY_					0	0	0		ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENSG00000100296|ENST00000490103|THOC5	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.7945556640625	2	603.793121	1205.57169	0.19682	0.00011884	0.054935	3.317E-05	0.25176	0.00015201	603.7931233279971	34.041	0.56747	34.041	33.883	34.45	0					25	22	2	0	0	0	0.33704	1	5506	5506		1.8442	0	1	22887			6009	1179	4039	4069	8213	8213					-0.022874797362419486
GREHWTRSQ	9	Unmodified	_GREHWTRSQ_					0	0	0		ENST00000291232.4_2_22:42319167-42319323:-|nuORF	ENST00000291232.4_2_22:42319167-42319323:-|nuORF	ENST00000291232.4_2_22:42319167-42319323:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.786865234375	2	578.783953	1155.55335	0.46108	0.00026687	-3.4075	-0.0019722	-2.9464	-0.0017053	579.2841927744802	68.552	0.83685	68.616	68.306	69.143	0.063507					109	31	5	0	0	0	0.30005	1	15920	15920		6.7232	1.4263	1	1318400			6010	5946	4040	4070	8214	8214					-0.01820176867590817
GRFLVHGEW	9	Unmodified	_GRFLVHGEW_					0	0	0			REV__nc|ENSG00000115325|Q99704-2|DOK1	REV__nc|ENSG00000115325|Q99704-2|DOK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7861328125	2	550.785433	1099.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.481	1	39.57	39.07	40.07	0.088562								0	0	0	0.27427	1	7010	7010		4.3292	0.73274	1		+		6011	12776	4041	4071	8215	8215					0.010516982572426059
GRGKKASYSI	10	Unmodified	_GRGKKASYSI_					0	0	0			REV__nc|ENSG00000246774|Q6ZST2|COL25A1-DT	REV__nc|ENSG00000246774|Q6ZST2|COL25A1-DT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.802001953125	2	533.803823	1065.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.762	1	65.829	65.329	66.329	0.066872								0	0	0	0.33738	1	14972	14972		3.2813	0.39209	1		+		6012	12901	4042	4072	8216	8216					0.06291950083118536
GRKELQAK	8	Unmodified	_GRKELQAK_					0	0	0			REV__ENSG00000084731|ENST00000264712|KIF3C	REV__ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2798156738281	2	465.279983	928.545414	0.58574	0.00027253	-0.67053	-0.00031198	-0.084785	-3.9449E-05	465.2796180781723	83.594	0.81258	83.594	83.341	84.154	0					47	27	2	0	0	0	0.53858	1	20606	20606		2.3027	0.24298	1	224700	+		6013	8262	4043	4073	8217	8217					0.07828295882939074
GRLGRRERPV	10	Unmodified	_GRLGRRERPV_					0	0	0		ENST00000581067.1_1_18:5237286-5237328:-|nuORF	ENST00000581067.1_1_18:5237286-5237328:-|nuORF	ENST00000581067.1_1_18:5237286-5237328:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3580322265625	2	598.360162	1194.70577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.92	1	86.948	86.448	87.448	0.027573								0	0	0	0.33528	1	21412	21412		5.7319	0.43497	1				6014	7219	4044	4074	8218	8218					0.11620643599826508
GRLKHERVK	9	Unmodified	_GRLKHERVK_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8455200195312	2	561.846356	1121.67816	0.38303	0.00021521	-1.0524	-0.00059129	-0.66936	-0.00037608	561.8456410443935	90.957	0.86748	90.957	90.734	91.602	0					65	31	3	0	0	0	0.33849	1	22751	22751		1.6526	1.6526	1	368300			6015	1073	4045	4075	8219	8219					0.12218740339585565
GRLKHERVK	9	Unmodified	_GRLKHERVK_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8460693359375	2	561.846356	1121.67816	0.18338	0.00010303	-0.78305	-0.00043995	-0.59967	-0.00033692	561.8457947596255	90.985	0.84721	91.02	90.683	91.53	0.035446					69	31	3	0	0	0	0.33849	1	22692	22692		1.6526	0.17072	1	374160			6016	1073	4045	4075	8220	8220					0.12218740339585565
GRLTRRPSF	9	Unmodified	_GRLTRRPSF_					0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3169555664062	2	545.317432	1088.62031	0.2556	0.00013938	-0.89599	-0.0004886	-0.64039	-0.00034922	545.3167985551793	87.562	1.0736	87.592	87.311	88.385	0.030037					86	39	4	0	0	0	0.29576	1	21606	21606		7.2892	7.2892	1	672500			6017	5751	4046	4076	8221	8221					0.07954478414171717
GRNWCPYP	8	Unmodified	_GRNWCPYP_					0	0	0		MMRN2|p.V53I|1|0.13|ENSG00000173269|chr10:86957385-86957385|C/T|missense_variant;ENSG00000173269|ENST00000372027|MMRN2	MMRN2|p.V53I|1|0.13|ENSG00000173269|chr10:86957385-86957385|C/T|missense_variant	MMRN2|p.V53I|1|0.13|ENSG00000173269|chr10:86957385-86957385|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.711669921875	2	496.723987	991.433421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.198	1	24.297	23.797	24.797	0.099739								0	0	0	0.38822	1	2494	2494		0.79363	0	1				6018	4540	4047	4077	8222	8222					-0.0626388146570207
GRQKDHLVKF	10	Unmodified	_GRQKDHLVKF_					0	0	0			REV__nc|ENSG00000164347|Q969S9-3|GFM2	REV__nc|ENSG00000164347|Q969S9-3|GFM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.3516845703125	2	614.351471	1226.68839	0.089757	5.5142E-05	2.9579	0.0018172	3.0477	0.0018723	614.3527823022602	47.157	0.14577	47.24	47.151	47.297	0.083096					8	5	2	0	0	0	0.45945	1	9332	9332		2.9952	0.93549	1	52660	+		6019	9994	4048	4078	8223	8223					0.0841130327414703
GRRGNAVL	8	Unmodified	_GRRGNAVL_					0	0	0		ENST00000553027.1_1_12:49319137-49319416:-|nuORF	ENST00000553027.1_1_12:49319137-49319416:-|nuORF	ENST00000553027.1_1_12:49319137-49319416:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.7515563964844	2	421.751393	841.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.9	1	73.9	73.4	74.4	0								0	0	0	0.38822	1	17596	17596		0.79363	0	1				6020	7111	4049	4079	8224	8224					0.06114873397223164
GRRGRLGPLP	10	Unmodified	_GRRGRLGPLP_					0	0	0			REV__ENST00000355280.10_1_17:4736705-4736843:+|nuORF	REV__ENST00000355280.10_1_17:4736705-4736843:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8327026367188	2	539.833249	1077.65194	0.25243	0.00013627	-1.0227	-0.00055208	-0.77027	-0.00041582	539.8325430619564	89.257	0.8772	89.257	89.03	89.908	0					76	34	3	0	0	0	0.44246	2	22322	22277;22322		6.2058	2.6093	1	305110	+		6021	11495	4050	4080	8225;8226	8226					0.1162247116810704
GRRLETRPPI	10	Unmodified	_GRRLETRPPI_					0	0	0			REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF	REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8558349609375	2	597.856921	1193.69929	0.087713	5.244E-05	-1.0279	-0.00061456	-0.94023	-0.00056212	597.8562021139799	86.948	0.61867	86.948	86.784	87.402	0					46	26	2	0	0	0	0.44496	2	21653	21551;21653		5.7319	2.9967	1	783690	+		6022	9732	4051	4081	8227;8228	8228					0.11018705648439209
GRRLETRPPI	10	Unmodified	_GRRLETRPPI_					0	0	0			REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF	REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8563842773438	2	597.856921	1193.69929	-0.027075	-1.6187E-05	-0.55283	-0.00033051	-0.5799	-0.0003467	597.8564975901465	90.917	0.72655	90.953	90.657	91.384	0.035446					61	27	3	0	0	0	0.44496	1	22630	22630		5.7319	1.4026	1	276380	+		6023	9732	4051	4081	8229	8229					0.11018705648439209
GRVETEVLF	9	Unmodified	_GRVETEVLF_					0	0	0		tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1	tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1	tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2869262695312	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.069	1	93.106	92.606	93.606	0.037369								0	0	0	0.25692	1	23277	23277		7.9102	0	1				6024	13663	4052	4082	8230	8230					0.032974390976505674
GRVSPSPSQES	11	Unmodified	_GRVSPSPSQES_					0	0	0		nc|ENSG00000131725|Q5JSH3-3|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-3|WDR44	nc|ENSG00000131725|Q5JSH3-3|WDR44	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.77685546875	2	565.775459	1129.53637	-0.13948	-7.8914E-05	1.9345	0.0010945	1.7951	0.0010156	565.7766843074081	45.891	0.3343	45.891	45.675	46.009	0					14	11	2	0	0	0	0.41422	1	9086	9086		1.0715	0.38109	1	34183			6025	2542	4053	4083	8231	8231					-0.023221422640290257
GRYCCLIL	8	Unmodified	_GRYCCLIL_					0	0	0		SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|2|1|sense	SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|2|1|sense	SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|2|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7406005859375	2	470.740791	939.467029	-0.10788	-5.0784E-05	-0.62396	-0.00029372	-0.73184	-0.00034451	470.7403656725568	39.299	1.1243	39.388	39.131	40.256	0.088562					102	45	4	0	0	0	0.53858	1	7099	7099		2.3027	0.4585	1	704030			6026	13415	4054	4084	8232	8232					-0.005125960181430855
GSASVAALLIL	11	Unmodified	_GSASVAALLIL_					0	0	0			REV__ENSG00000142235|ENST00000600059|LMTK3	REV__ENSG00000142235|ENST00000600059|LMTK3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.8153076171875	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.44	1	107.47	106.97	107.97	0.025711								0	0	0	0.33362	1	27528	27528		2.9952	0.41776	1		+		6027	9426	4055	4085	8233	8233					0.10583486654184071
GSDHCSSIVI	10	Unmodified	_GSDHCSSIVI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2359924316406	2	509.237124	1016.45969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.78	1	101.78	101.28	102.28	0								0	0	0	0.33681	1	26088	26088		3.9444	1.0552	1				6028	3593	4056	4086	8234	8234					-0.04787657084887087
GSGGGAVC	8	Unmodified	_GSGGGAVC_					0	0	0		ENST00000372695.5_1_X:102470033-102470683:+|nuORF	ENST00000372695.5_1_X:102470033-102470683:+|nuORF	ENST00000372695.5_1_X:102470033-102470683:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.340087890625	1	607.250437	606.24316	0.65723	0.0003991	-0.13493	-8.1934E-05	0.5223	0.00031717	607.2508395137016	75.572	0.16343	75.572	75.425	75.589	0					6	5	2	0	0	0	0.3576	1	18091	18091		2.5775	0	1	111910			6029	6219	4057	4087	8235	8235					-0.07571168127935834
GSLEEKEII	9	Unmodified	_GSLEEKEII_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2766418457031	2	509.276772	1016.53899	0.39084	0.00019904	-0.44165	-0.00022492	-0.05081	-2.5876E-05	509.27636657717255	47.454	0.47163	47.454	47.263	47.735	0					29	15	3	0	0	0	0.2546	1	9539	9539		12.241	0.74595	1	182760			6030	3312	4058	4088	8236	8236					0.031383131409029374
GSLHGSPSIH	10	Unmodified	_GSLHGSPSIH_					0	0	0		nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7434997558594	2	496.251423	990.488293	-0.016732	-8.3035E-06	0.12535	6.2206E-05	0.10862	5.3902E-05	496.2514214642185	28.62	0.60713	28.702	28.492	29.1	0.082132					74	38	3	0	0	0	0.37232	1	3749	3749		14.838	4.7643	1	190620			6031	2735	4059	4089	8237	8237					-0.007331713934377149
GSLLAELAPLL	11	Unmodified	_GSLLAELAPLL_					0	0	0			REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.8356323242188	2	548.834257	1095.65396	0.3576	0.00019626	2.2617	0.0012413	2.6193	0.0014376	548.8350433949313	109.78	0.15933	109.8	109.76	109.92	0.017242					24	20	2	0	0	0	0.39569	1	28077	28077		5.2969	0.96765	1	1279500	+		6032	11175	4060	4090	8238	8238					0.10996042342708279
GSSGAGSTEG	10	Unmodified	_GSSGAGSTEG_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.1678161621094	2	405.167222	808.31989	0.11284	4.5718E-05	0.7181	0.00029095	0.83093	0.00033667	405.16787112073314	105.72	1.1577	105.75	105.4	106.56	0.029739					352	130	5	0	0	0	0.46746	1	27026	27026		1.4819	0.68827	1	3571300	+		6033	9026	4061	4091	8239	8239					-0.09193698097749348
GSSGSTTFNM	10	Unmodified	_GSSGSTTFNM_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.70562744140625	2	494.705657	987.39676	-0.016219	-8.0237E-06	0.38098	0.00018847	0.36476	0.00018045	494.705717055296	27.324	0.27349	27.324	27.156	27.429	0					26	15	2	0	0	0	0.42901	1	3518	3518		8.7454	2.985	1	30897	+		6034	10676	4062	4092	8240	8240					-0.09744222872916453
GSSGVVPATMD	11	Unmodified	_GSSGVVPATMD_					0	0	0			REV__nc|ENSG00000141314|P58872-2|RHBDL3	REV__nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7388916015625	2	510.736957	1019.45936	0.68869	0.00035174	1.3605	0.00069486	2.0492	0.0010466	510.7376814293199	66.843	1.313	66.843	66.248	67.561	0					79	50	2	0	0	0	0.31637	2	15451	15384;15451		16.149	1.4208	1	168980	+		6035	9393	4063	4093	8241;8242	8242					-0.04959076804732376
GSSPVFNQR	9	Unmodified	_GSSPVFNQR_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2513427734375	2	496.251423	990.488293	-0.014478	-7.1848E-06	-0.038153	-1.8933E-05	-0.052631	-2.6118E-05	496.25133857808567	28.708	0.8386	28.708	28.512	29.351	0					85	45	3	0	0	0	0.091044	3	3919	3898;3919;3961		34.402	17.315	1	222230			6036	2086	4064	4094	8243;8244;8245	8244					-0.007331713934263462
GSSPVFNQR	9	Unmodified	_GSSPVFNQR_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2514343261719	2	496.251423	990.488293	-0.016732	-8.3035E-06	0.12535	6.2206E-05	0.10862	5.3902E-05	496.2514214642185	28.62	0.60713	28.702	28.492	29.1	0.082132					74	38	3	0	0	0	0.11547	1	3771	3771		29.082	11.995	1	190620			6037	2086	4064	4094	8246	8246					-0.007331713934263462
GSSPVFNQR	9	Unmodified	_GSSPVFNQR_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	496.251423	990.488293	-0.014478	-7.1848E-06	-0.038153	-1.8933E-05	-0.052631	-2.6118E-05	496.25133857808567	28.708	0.8386	28.708	28.512	29.351	0	0.0033066	-8.1806E-05	NaN	34.402	85	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222230			6038	2086	4064	4094							-0.007331713934263462
GSTFSVVIPFL	11	Unmodified	_GSTFSVVIPFL_					0	0	0		nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	nc|ENSG00000169855|Q9Y6N7-6|ROBO1	nc|ENSG00000169855|Q9Y6N7-6|ROBO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3406372070312	2	583.826432	1165.63831	0.77735	0.00045384	0.24346	0.00014214	1.0208	0.00059598	583.8264709288788	81.431	0.59515	81.453	81.196	81.792	0.021866					52	21	3	0	0	0	0.31094	1	19693	19693		1.3295	0.5359	1	292230			6039	4360	4065	4095	8247	8247					0.06211755825665932
GSWGAPFIPF	10	Unmodified	_GSWGAPFIPF_					0	0	0		nc|ENSG00000166473|Q7Z442-6|PKD1L2	nc|ENSG00000166473|Q7Z442-6|PKD1L2	nc|ENSG00000166473|Q7Z442-6|PKD1L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2703857421875	2	539.77146	1077.52837	0.6651	0.000359	-0.47766	-0.00025783	0.18744	0.00010118	539.7697607004603	81.305	0.36066	81.327	81.162	81.523	0.021866					18	12	2	0	0	0	0.31288	1	19688	19688		10.824	0.75	1	67052			6040	7552	4066	4096	8248	8248					-0.0072962472286235425
GSWNPASL	8	Unmodified	_GSWNPASL_					0	0	0		nc|ENSG00000147475|O94905-3|ERLIN2	nc|ENSG00000147475|O94905-3|ERLIN2	nc|ENSG00000147475|O94905-3|ERLIN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2146301269531	2	416.20341	830.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.853	1	40.853	40.353	41.353	0								0	0	0	0.38822	1	7549	7549		2.3027	0	1				6041	7525	4067	4097	8249	8249					-0.029713192335407257
GSYMMECLTN	10	Unmodified	_GSYMMECLTN_					0	0	0		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.72509765625	2	574.724677	1147.4348	0.43065	0.0002475	0.97863	0.00056244	1.4093	0.00080995	574.7251156036677	53.507	0.76585	53.572	53.351	54.117	0.065426					94	33	4	0	0	0	0.42901	3	11228	11228;11275;11327		8.7454	4.4162	1	461910			6042	3277	4068	4098	8250;8251;8252	8250					-0.13301796274117805
GTDAHPLLF	9	Unmodified	_GTDAHPLLF_					0	0	0		ENSG00000180042|ENST00000572493|OR1R1P	ENSG00000180042|ENST00000572493|OR1R1P	ENSG00000180042|ENST00000572493|OR1R1P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7455749511719	2	485.753267	969.491981	-0.050618	-2.4588E-05	2.0527	0.00099709	2.002	0.0009725	485.75432539418676	49.321	0.9866	49.321	48.576	49.562	0					59	34	2	0	0	0	0.21398	1	10158	10158		16.942	5.302	1	201840			6043	4797	4069	4099	8253	8253					0.006014983804334406
GTDPGWQIQL	10	Unmodified	_GTDPGWQIQL_					0	0	0			REV__ENST00000550443.5_1_12:56551510-56551743:+|nuORF	REV__ENST00000550443.5_1_12:56551510-56551743:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7791137695312	2	557.780013	1113.54547	0.2968	0.00016555	-0.98527	-0.00054957	-0.68847	-0.00038401	557.7799624331745	51.89	1.8734	51.89	51.239	53.113	0					206	65	5	0	0	0	0.41688	1	10843	10843		10.074	0.72649	1	2896500	+		6044	12432	4070	4100	8254	8254					-0.006757489077244827
GTEAQRVWG	9	Unmodified	_GTEAQRVWG_					0	0	0		ENST00000579585.5_1_17:61771267-61771504:+|nuORF	ENST00000579585.5_1_17:61771267-61771504:+|nuORF	ENST00000579585.5_1_17:61771267-61771504:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2802429199219	2	502.251423	1002.48829	-0.13537	-6.7992E-05	-0.61857	-0.00031068	-0.75394	-0.00037867	502.2510370869229	28.302	0.36616	28.384	28.232	28.599	0.082132					44	21	3	0	0	0	0.23598	1	3680	3680		15.847	1.9411	1	98239			6045	7214	4071	4101	8255	8255					-0.012851713934310283
GTEEEEDFFQ	10	Unmodified	_GTEEEEDFFQ_					0	0	0			REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7439575195312	2	615.74349	1229.47243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.12	1	20.12	19.62	20.62	0								0	0	0	0.34005	1	1523	1523		0	0	1		+		6046	8721	4072	4102	8256	8256					-0.1331296721164108
GTFIDLLVQL	10	Unmodified	_GTFIDLLVQL_					0	0	0			REV__ENST00000593099.5_1_17:33331270-33331522:+|nuORF	REV__ENST00000593099.5_1_17:33331270-33331522:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.826416015625	2	559.826432	1117.63831	0.5503	0.00030807	-0.25827	-0.00014459	0.29203	0.00016349	559.8264701493644	102.86	0.15099	102.9	102.87	103.02	0.040909					15	10	2	0	0	0	0.40359	1	26253	26253		11.495	0	1	74733	+		6047	12593	4073	4103	8257	8257					0.08419755825661923
GTFILCWLPF	10	Unmodified	_GTFILCWLPF_					0	0	0		ENSG00000178394|ENST00000323865|HTR1A	ENSG00000178394|ENST00000323865|HTR1A	ENSG00000178394|ENST00000323865|HTR1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2877807617188	2	598.81227	1195.60999	0.28843	0.00017271	-0.39927	-0.00023908	-0.11084	-6.6371E-05	598.8122567024113	59.693	0.50792	59.693	59.481	59.989	0					41	19	3	0	0	0	0.31456	1	13284	13284		14.838	1.7958	1	285160			6048	4742	4074	4104	8258	8258					0.02000734644707336
GTHRMVCDF	9	Unmodified	_GTHRMVCDF_					0	0	0		ENST00000428429.1_1_9:116352200-116352278:-|nuORF	ENST00000428429.1_1_9:116352200-116352278:-|nuORF	ENST00000428429.1_1_9:116352200-116352278:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2349853515625	2	533.233861	1064.45317	0.52201	0.00027835	1.2533	0.00066829	1.7753	0.00094664	533.2344271176127	94.285	0.61876	94.323	94.123	94.742	0.038086					64	24	5	0	0	0	0.33849	1	23614	23614		1.6526	0.17072	1	350120			6049	6479	4075	4105	8259	8259					-0.07647873517248627
GTIFWYVWL	9	Unmodified	_GTIFWYVWL_					0	0	0			REV__ENSG00000177663|ENST00000319363|IL17RA	REV__ENSG00000177663|ENST00000319363|IL17RA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.7718505859375	2	592.810585	1183.60662	0.44542	0.00026405	-2.5481	-0.0015105	-2.1026	-0.0012465	592.809101457338	62.871	0.30916	62.871	62.66	62.969	0					16	10	2	0	0	0	0.20004	1	14238	14238		23.148	5.0134	1	132640	+		6050	10434	4076	4106	8260	8260					0.02215807862398833
GTIFWYVWL	9	Unmodified	_GTIFWYVWL_					0	0	0			REV__ENSG00000177663|ENST00000319363|IL17RA	REV__ENSG00000177663|ENST00000319363|IL17RA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.7717895507812	2	592.810585	1183.60662	0.38496	0.00022821	-3.5632	-0.0021123	-3.1783	-0.0018841	592.8085097045371	62.744	0.37682	62.817	62.659	63.036	0.072701					19	13	2	0	0	0	0.20004	1	14089	14089		23.148	6.9993	1	141730	+		6051	10434	4076	4106	8261	8261					0.02215807862398833
GTKSEAQCKNF	11	Unmodified	_GTKSEAQCKNF_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2999877929688	2	606.787512	1211.56047	0.49291	0.00029909	-2.4006	-0.0014567	-1.9077	-0.0011576	607.2861344351747	53.128	0.10334	53.128	53.06	53.164	0					5	3	2	0	0	0	0.31086	1	11270	11270		0.96228	0	1	37670			6052	3040	4077	4107	8262	8262					-0.036846251020506315
GTKTGKKTLQ	10	Unmodified	_GTKTGKKTLQ_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3191528320312	2	531.319306	1060.62406	0.23153	0.00012302	0.025002	1.3284E-05	0.25653	0.0001363	531.3192309222627	89.307	0.90316	89.307	89.03	89.933	0					100	35	4	0	0	0	0.44246	1	22255	22255		6.2058	1.3088	1	534010			6053	2126	4078	4108	8263	8263					0.0961710339736328
GTLLDAIIC	9	Unmodified	_GTLLDAIIC_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7610168457031	2	459.751879	917.489204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.721	1	40.721	40.221	41.221	0								0	0	0	0.25361	1	7509	7509		8.5933	3.8373	1				6054	3193	4079	4109	8264	8264					0.027159069312574502
GTLTPDVF	8	Unmodified	_GTLTPDVF_					0	0	0		tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.752685546875	2	425.221268	848.427984	0.73405	0.00031213	0.68493	0.00029125	1.419	0.00060338	425.22143790974025	83.631	0.49908	83.631	83.401	83.9	0					24	16	2	0	0	0	0.3576	1	20569	20569		5.2307	0	1	98503			6055	13639	4080	4110	8265	8265					-0.0022928177651238
GTNDAEDCC	9	Unmodified	_GTNDAEDCC_					0	0	0		ENSG00000172724|ENST00000311925|CCL19	ENSG00000172724|ENST00000311925|CCL19	ENSG00000172724|ENST00000311925|CCL19	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.58184814453125	2	464.144575	926.274596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.776	1	69.776	69.276	70.276	0								0	0	0	0.29303	1	16337	16337		0.45834	0.45834	1				6056	4507	4081	4111	8266	8266					-0.1914900794680534
GTNWKESF	8	Unmodified	_GTNWKESF_					0	0	0			REV__nc|ENSG00000119231|Q96HI0-2|SENP5	REV__nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2459411621094	2	484.727249	967.439946	0.047086	2.2824E-05	0.63639	0.00030848	0.68348	0.0003313	484.7274830606253	46.921	0.38689	47.004	46.882	47.269	0.083092					22	14	2	0	0	0	0.3576	1	9241	9241		7.2892	7.2892	1	65089	+		6057	8850	4082	4112	8267	8267					-0.04507665033338526
GTQVEQLL	8	Unmodified	_GTQVEQLL_					0	0	0		ENST00000602287.5_1_10:104486384-104488287:+|nuORF;ENSG00000156398|ENST00000369893|SFXN2	ENST00000602287.5_1_10:104486384-104488287:+|nuORF	ENST00000602287.5_1_10:104486384-104488287:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	444.2462158203125	2	444.245275	886.475997	0.59537	0.00026449	1.2942	0.00057494	1.8896	0.00083943	444.245796114447	99.795	1.2965	99.795	99.433	100.73	0					142	72	2	0	0	0	0.53557	1	25485	25485		4.3292	0	1	21068000			6058	3622	4083	4113	8268	8268					0.028217921435384596
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2558288574219	2	453.256174	904.497795	-0.028219	-1.279E-05	-0.48114	-0.00021808	-0.50936	-0.00023087	453.2559042273018	27.926	0.47988	27.926	27.714	28.194	0					61	26	3	0	0	0	0.071704	2	3672	3672;3709		38.615	13.624	1	129080			6059	789	4084	4114	8269;8270	8269					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2559814453125	2	453.256174	904.497795	-0.22502	-0.00010199	0.0091568	4.1504E-06	-0.21586	-9.7841E-05	453.25606883321115	27.79	0.49215	27.872	27.69	28.182	0.082132					59	29	3	0	0	0	0.11816	1	3520	3520		28.495	6.9575	1	125240			6060	789	4084	4114	8271	8271					0.0417259689210141
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2457275390625	2	483.256174	964.497795	-0.29614	-0.00014311	0.37093	0.00017926	0.074797	3.6146E-05	483.25632668981774	32.946	0.60973	33.02	32.837	33.447	0.074322					51	24	3	0	0	0	0.28919	1	5067	5067		8.1555	4.2111	1	121130			6061	5457	4085	4115	8272	8272					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	483.256174	964.497795	-0.3509	-0.00016958	0.37428	0.00018088	0.023382	1.13E-05	483.25628496278944	33.042	0.5518	33.042	32.826	33.378	0	0.010645	1.2707E-06	NaN	8.1555	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127300			6062	5457	4085	4115							0.01412596892100737
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.27166748046875	2	466.271627	930.528701	0.16962	7.9089E-05	-0.087989	-4.1027E-05	0.081631	3.8062E-05	466.27143338785714	49.509	0.81529	49.509	49.314	50.129	0					51	28	3	0	0	0	0.03472	2	10155	10155;10207		47.749	31.902	1	295620			6063	3892	4086	4116	8273;8274	8273					0.06065794997005014
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.2715759277344	2	466.271627	930.528701	-0.048371	-2.2554E-05	0.13822	6.4447E-05	0.089848	4.1893E-05	466.271552353612	49.428	0.57164	49.504	49.249	49.821	0.076607					40	20	3	0	0	0	0.15282	1	10000	10000		24.021	8.1734	1	251410			6064	3892	4086	4116	8275	8275					0.06065794997005014
GVAVHNVR	8	Unmodified	_GVAVHNVR_					0	0	0		KLHL32|p.G547V|1|0.08|ENSG00000186231|chr6:97132686-97132686|G/T|missense_variant	KLHL32|p.G547V|1|0.08|ENSG00000186231|chr6:97132686-97132686|G/T|missense_variant	KLHL32|p.G547V|1|0.08|ENSG00000186231|chr6:97132686-97132686|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.2460021972656	2	426.245944	850.477334	0.15305	6.5239E-05	0.056677	2.4158E-05	0.20973	8.9397E-05	426.2459288531431	82.623	1.4446	82.645	81.969	83.414	0.021744					113	51	5	0	0	0	0.53817	1	20170	20170		2.5775	0	1	2541300			6065	7374	4087	4117	8276	8276					0.046114710229517186
GVAYRLPVG	9	Unmodified	_GVAYRLPVG_					0	0	0		ENSG00000143942|ENST00000295304|CHAC2	ENSG00000143942|ENST00000295304|CHAC2	ENSG00000143942|ENST00000295304|CHAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.2715759277344	2	466.271627	930.528701	-0.048371	-2.2554E-05	0.13822	6.4447E-05	0.089848	4.1893E-05	466.271552353612	49.428	0.57164	49.504	49.249	49.821	0.076607					40	20	3	0	0	0	0.29105	1	10055	10055		7.9102	0	1	251410			6066	3190	4088	4118	8277	8277					0.06065794997005014
GVCSTVTLNFN	11	Carbamidomethyl (C)	_GVC(Carbamidomethyl (C))STVTLNFN_	GVC(1)STVTLNFN		GVC(54)STVTLNFN		0	1	0		nc|ENSG00000141098|Q3B7J2-2|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;ENSG00000141098|ENST00000268797|GFOD2	nc|ENSG00000141098|Q3B7J2-2|GFOD2	nc|ENSG00000141098|Q3B7J2-2|GFOD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2899169921875	2	606.289888	1210.56522	0.7819	0.00047406	0.86646	0.00052533	1.6484	0.00099938	606.2893464180514	93.762	1.049	93.762	93.462	94.511	0					92	49	5	0	0	0	0.065679	1	23638	23638		53.833	16.758	1	1243000			6067	3043	4089	4119	8278	8278	9				-0.03163740959280403
GVDVSEVLF	9	Unmodified	_GVDVSEVLF_					0	0	0		ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7525939941406	2	482.752933	963.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.582	1	79.609	79.109	80.109	0.026436								0	0	0	0.21527	1	19176	19176		15.847	0	1				6068	3050	4090	4120	8279	8279					0.008106589407361753
GVEVPDVEL	9	Unmodified	_GVEVPDVEL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7503356933594	2	478.75039	955.486227	0.171	8.1868E-05	0.11372	5.4445E-05	0.28473	0.00013631	478.7502934879609	71.169	0.39238	71.169	70.937	71.329	0					18	12	2	0	0	0	0.27332	1	16766	16766		10.074	2.1638	1	182510			6069	2279	4091	4121	8280	8280					0.006703550781026024
GVEVPDVEL	9	Unmodified	_GVEVPDVEL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7503662109375	2	478.75039	955.486227	0.24841	0.00011893	-0.0097593	-4.6723E-06	0.23865	0.00011426	478.75028004468123	71.087	0.4453	71.146	70.933	71.378	0.058578					31	15	3	0	0	0	0.19398	1	16571	16571		19.257	11.968	1	198640			6070	2279	4091	4121	8281	8281					0.006703550781026024
GVFAVSSTL	9	Unmodified	_GVFAVSSTL_					0	0	0		ENST00000509248.1_1_4:139101937-139104441:-|nuORF	ENST00000509248.1_1_4:139101937-139104441:-|nuORF	ENST00000509248.1_1_4:139101937-139104441:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7425842285156	2	440.742368	879.470183	-0.012635	-5.5687E-06	-0.18846	-8.3064E-05	-0.2011	-8.8633E-05	440.7421089367579	39.436	0.4702	39.525	39.435	39.905	0.088562					28	18	2	0	0	0	0.25209	1	7008	7008		12.532	0.89125	1	72228			6071	6902	4092	4122	8282	8282					0.025626936318644766
GVGHPPPR	8	Unmodified	_GVGHPPPR_					0	0	0			REV__ENST00000474481.1_1_1:1425808-1431194:+|nuORF	REV__ENST00000474481.1_1_1:1425808-1431194:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.7272644042969	2	408.727387	815.44022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.124	1	93.161	92.661	93.661	0.037369								0	0	0	0.38822	1	23294	23294		0.79363	0	1		+		6072	12045	4093	4123	8283	8283					0.02511799477179011
GVKVQEYHIM	10	Unmodified	_GVKVQEYHIM_					0	0	0		nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.87786865234375	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.244	1	24.344	23.844	24.844	0.099739								0	0	0	0.33877	1	2506	2506		0.69767	0.24315	1				6073	3215	4094	4124	8284	8284					0.018577436626628696
GVLYKSFYN	9	Unmodified	_GVLYKSFYN_					0	0	0			REV__tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	REV__tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7841186523438	2	545.782025	1089.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.8	1	103.8	103.3	104.3	0								0	0	0	0.26267	1	26691	26691		6.7232	1.9672	1		+		6074	13282	4095	4125	8285	8285					0.008303405860033308
GVSDLESY	8	Unmodified	_GVSDLESY_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8822326660156	2	435.19799	868.381428	0.33415	0.00014542	-2.3975	-0.0010434	-2.0634	-0.00089798	435.197011244988	93.317	0.65836	93.355	93.255	93.913	0.037369					37	26	2	0	0	0	0.3576	1	23467	23467		2.5775	0	1	164470			6075	1738	4096	4126	8286	8286					-0.058027663984830724
GVTIEEAI	8	Unmodified	_GVTIEEAI_					0	0	0			REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.220458984375	2	416.226551	830.438549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.709	1	48.709	48.209	49.209	0								0	0	0	0.38796	1	9921	9921		14.582	1.0738	1		+		6076	8086	4097	4127	8287	8287					0.01654700877918458
GVTIEEAI	8	Unmodified	_GVTIEEAI_					0	0	0			REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.220458984375	2	416.226551	830.438549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.613	1	48.691	48.191	49.191	0.078587								0	0	0	0.38822	1	9762	9762		10.183	0.83596	1		+		6077	8086	4097	4127	8288	8288					0.01654700877918458
GVTQALPAL	9	Unmodified	_GVTQALPAL_					0	0	0			REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8822326660156	2	435.258185	868.501818	0.64736	0.00028177	-0.74197	-0.00032295	-0.094618	-4.1183E-05	435.25777605393296	60.252	0.46584	60.252	60.017	60.483	0					24	16	2	0	0	0	0.25458	1	13490	13490		5.7319	2.1354	1	105720	+		6078	7713	4098	4128	8289	8289					0.062306863857997996
GVTQALPAL	9	Unmodified	_GVTQALPAL_					0	0	0			REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	435.258185	868.501818	0.059571	2.5929E-05	-0.030258	-1.317E-05	0.029313	1.2759E-05	435.25810795479885	60.177	0.3316	60.25	60.066	60.398	0.073307	-0.00072932	0.00028249	NaN	5.7319	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96570	+		6079	7713	4098	4128							0.062306863857997996
GVVADSLSGL	10	Unmodified	_GVVADSLSGL_					0	0	0			REV__ENSG00000155719|ENST00000646100|OTOA	REV__ENSG00000155719|ENST00000646100|OTOA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2498474121094	2	459.250557	916.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.924	1	34	33.5	34.5	0.076244								0	0	0	0.33738	1	5344	5344		3.2813	0	1		+		6080	9734	4099	4129	8290	8290					0.024977747979505693
GVYLTHSAP	9	Unmodified	_GVYLTHSAP_					0	0	0			REV__ENSG00000135622|ENST00000357877|SEMA4F	REV__ENSG00000135622|ENST00000357877|SEMA4F	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2763977050781	2	472.745442	943.476331	0.26649	0.00012598	0.09826	4.6452E-05	0.36475	0.00017243	472.74588584483814	47.865	0.16154	47.945	47.843	48.004	0.080029					8	5	2	0	0	0	0.25174	1	9513	9513		7.2892	0	1	43462	+		6081	9211	4100	4130	8291	8291					0.00233211863383076
GWDAWYMYR	9	Unmodified	_GWDAWYMYR_					0	0	0			REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5149230957031	3	416.514931	1246.52296	0.22671	9.443E-05	-0.55988	-0.0002332	-0.33317	-0.00013877	416.51473242524565	34.53	1.0617	34.53	34.356	35.417	0					69	39	4	0	0	0	0.32112	1	5638	5638		2.2828	0	1	73884	+		6082	11899	4101	4131	8292	8292					-0.09043671577001078
GWEEYFDYIF	10	Unmodified	_GWEEYFDYIF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.8639831542969	3	456.864283	1367.57102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.193	1	35.193	34.693	35.693	0								0	0	0	0.34005	1	5844	5844		0.15932	0	1				6083	1252	4102	4132	8293	8293					-0.09806319175936551
GWPSRDQE	8	Unmodified	_GWPSRDQE_					0	0	0		ENSG00000110665|ENST00000381153|C11orf21	ENSG00000110665|ENST00000381153|C11orf21	ENSG00000110665|ENST00000381153|C11orf21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7193603515625	2	487.719956	973.425358	-0.36481	-0.00017793	0.25767	0.00012567	-0.10714	-5.2253E-05	487.7200325816016	24.834	0.65181	24.834	24.649	25.301	0					90	49	2	0	0	0	0.53817	1	2893	2893		2.5775	0	1	106560			6084	1675	4103	4133	8294	8294					-0.062417371814717626
GWRVRGPN	8	Unmodified	_GWRVRGPN_					0	0	0			REV__ENST00000465458.1_1_17:8409499-8413222:-|nuORF	REV__ENST00000465458.1_1_17:8409499-8413222:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2562561035156	2	471.256843	940.499132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.437	1	37.522	37.022	38.022	0.084476								0	0	0	0.38822	1	6396	6396		2.5775	0	1		+		6085	11988	4104	4134	8295	8295					0.026502757715206826
GWVEGGYIV	9	Unmodified	_GWVEGGYIV_					0	0	0			REV__ENSG00000128313|ENST00000249044|APOL5	REV__ENSG00000128313|ENST00000249044|APOL5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7923889160156	2	490.247818	978.481082	0.36583	0.00017935	-4.1228	-0.0020212	-3.757	-0.0018419	490.2437628929424	68.439	0.34669	68.439	68.211	68.558	0					15	11	2	0	0	0	0.25416	1	15888	15888		5.2307	2.3415	1	39874	+		6086	9014	4105	4135	8296	8296					-0.009019039938493734
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.27667236328125	2	496.276575	990.538597	0.54824	0.00027208	-0.28028	-0.0001391	0.26797	0.00013299	496.27642040006083	88.45	1.2504	88.45	88.139	89.39	0					123	50	4	0	0	0	9.8596E-13	7	22025	21976;22025;22072;22116;22161;22219;22266		181.33	73.33	1	6308000			6087	2706	4106	4136	8297;8298;8299;8300;8301;8302;8303	8298					0.04294938211717181
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.27667236328125	2	496.276575	990.538597	0.45833	0.00022746	-0.19841	-9.8468E-05	0.25991	0.00012899	496.2764320884329	88.379	1.1301	88.409	88.141	89.271	0.030037					129	45	5	0	0	0	2.0801E-17	6	21847	21802;21847;21892;21938;21985;22036		197.17	89.17	1	4217000			6088	2706	4106	4136	8304;8305;8306;8307;8308;8309	8305					0.04294938211717181
GYAFTLPLF	9	Unmodified	_GYAFTLPLF_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7328491210938	2	514.776211	1027.53787	0.54915	0.00028269	-0.28808	-0.0001483	0.26107	0.00013439	514.776069872504	99.286	0.32102	99.286	99.112	99.433	0					41	20	3	0	0	0	0.20004	1	25333	25333		23.148	10.617	1	235210			6089	5690	4107	4137	8310	8310					0.02520143562674093
GYAFTLPLF	9	Unmodified	_GYAFTLPLF_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7765502929688	2	514.776211	1027.53787	0.55532	0.00028587	-0.31791	-0.00016365	0.23741	0.00012221	514.7761161191413	99.213	0.37311	99.256	99.133	99.506	0.042839					50	25	3	0	0	0	0.1182	1	25188	25188		28.487	11.545	1	265010			6090	5690	4107	4137	8311	8311					0.02520143562674093
GYAHWIGLF	9	Unmodified	_GYAHWIGLF_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2715454101562	2	532.271627	1062.5287	0.49025	0.00026095	0.090624	4.8237E-05	0.58087	0.00030918	532.2716236104405	75.064	1.0637	75.064	74.796	75.86	0					127	44	4	0	0	0	0.0044274	2	18115	18115;18168		93.763	57.719	1	7526300			6091	3521	4108	4138	8312;8313	8312					-6.205003023751487E-05
GYAHWIGLF	9	Unmodified	_GYAHWIGLF_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2710571289062	2	532.271627	1062.5287	0.37167	0.00019783	-0.36322	-0.00019333	0.0084421	4.4935E-06	532.2714639819114	76.463	0.9649	76.463	76.21	77.175	0					69	34	3	0	0	0	0.11964	3	18413	18364;18413;18476		28.173	7.2925	1	172680			6092	3521	4108	4138	8314;8315;8316	8315					-6.205003023751487E-05
GYAHWIGLF	9	Unmodified	_GYAHWIGLF_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2718505859375	2	532.271627	1062.5287	0.51136	0.00027218	0.03206	1.7065E-05	0.54342	0.00028925	532.2715784544408	75.082	0.91074	75.126	74.841	75.752	0.044037					105	34	4	0	0	0	0.0044274	1	17935	17935		93.763	65.276	1	9731100			6093	3521	4108	4138	8317	8317					-6.205003023751487E-05
GYAHWIGLF	9	Unmodified	_GYAHWIGLF_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2716674804688	2	532.271627	1062.5287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.976	1	76.015	75.515	76.515	0.03923								0	0	0	0.13254	1	18075	18075		28.173	11.231	1				6094	3521	4108	4138	8318	8318					-6.205003023751487E-05
GYAHWIGLF	9	Unmodified	_GYAHWIGLF_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8204345703125	2	532.271627	1062.5287	0.50318	0.00026783	-0.21896	-0.00011655	0.28422	0.00015128	532.2714064829745	76.234	0.97383	76.273	76.149	77.123	0.03923					47	36	3	0	0	0	0.24749	1	18394	18394		9.3474	1.4373	1	224950			6095	3521	4108	4138	8319	8319					-6.205003023751487E-05
GYAKLVDFGF	10	Unmodified	_GYAKLVDFGF_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7898559570312	2	558.78985	1115.56515	0.48217	0.00026943	-1.0772	-0.00060192	-0.59502	-0.00033249	558.7892883449349	71.43	0.40052	71.43	71.239	71.64	0					20	13	2	0	0	0	0.012609	1	16856	16856		74.2	43.975	1	144810			6096	5030	4109	4139	8320	8320					0.011986271030536955
GYALILKLKLL	11	Unmodified	_GYALILKLKLL_					0	0	0		ENST00000306434.7_1_2:85769027-85769380:+|nuORF	ENST00000306434.7_1_2:85769027-85769380:+|nuORF	ENST00000306434.7_1_2:85769027-85769380:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.291259765625	2	622.920667	1243.82678	0.16078	0.00010016	1.5592	0.00097128	1.72	0.0010714	623.4226442959399	62.13	0.14262	62.204	62.142	62.285	0.073421					6	4	2	0	0	0	0.311	1	13850	13850		0.35063	0.35063	1	81985			6097	5986	4110	4140	8321	8321					0.2146203346992479
GYASRFIVI	9	Unmodified	_GYASRFIVI_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2928466796875	2	513.292559	1024.57057	0.45195	0.00023198	0.17839	9.1564E-05	0.63034	0.00032355	513.2926164555771	62.7	1.0009	62.7	62.473	63.474	0					68	37	3	0	0	0	0.020768	2	14177	14177;14224		57.722	34.986	1	654810			6098	3528	4111	4141	8322;8323	8322					0.05926350685513171
GYASRFIVI	9	Unmodified	_GYASRFIVI_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2927856445312	2	513.292559	1024.57057	0.38676	0.00019852	0.12066	6.1935E-05	0.50742	0.00026045	513.2925626029075	62.545	0.79335	62.617	62.45	63.243	0.072697					52	30	3	0	0	0	0.029291	2	14006	14006;14076		51.63	28.894	1	667260			6099	3528	4111	4141	8324;8325	8324					0.05926350685513171
GYFETPFSF	9	Unmodified	_GYFETPFSF_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7454223632812	2	547.745108	1093.47566	0.19079	0.0001045	0.17464	9.5659E-05	0.36543	0.00020016	547.745139390376	89.603	0.49344	89.603	89.39	89.883	0					31	18	2	0	0	0	0.0087214	1	22366	22366		71.134	49.387	1	465300			6100	2291;7338	4112	4142	8326	8326					-0.06733627576318213
GYFETPFSF	9	Unmodified	_GYFETPFSF_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.744873046875	2	547.745108	1093.47566	0.22805	0.00012491	0.47484	0.00026009	0.70289	0.00038501	547.7450126332803	89.547	0.57474	89.579	89.355	89.93	0.032265					59	21	4	0	0	0	0.074645	1	22193	22193		37.974	26.334	1	426780			6101	2291;7338	4112	4142	8327	8327					-0.06733627576318213
GYFFFFGGYE	10	Unmodified	_GYFFFFGGYE_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15;ENSG00000120329|ENST00000239451|SLC25A2	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.2661743164062	2	617.266207	1232.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.776	1	33.776	33.276	34.276	0								0	0	0	0.34018	1	5418	5418		0	0	1				6102	1323	4113	4143	8328	8328					-0.08909652167949389
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2587890625	2	529.258717	1056.50288	0.3885	0.00020562	-0.15153	-8.0198E-05	0.23697	0.00012542	529.2586888902409	47.145	0.80229	47.145	46.904	47.707	0					69	26	4	0	0	0	0.0037915	3	9441	9441;9493;9547		104.8	66.648	1	988020			6103	596	4114	4144	8329;8330;8331	8329					-0.023110992452757273
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2588500976562	2	529.258717	1056.50288	0.37044	0.00019606	-0.096663	-5.116E-05	0.27377	0.0001449	529.2586978965162	47.074	0.70249	47.157	46.937	47.639	0.083096					63	27	3	0	0	0	0.004452	3	9320	9276;9320;9362		92.822	62.597	1	928520			6104	596	4114	4144	8332;8333;8334	8333					-0.023110992452757273
GYGKFLIAF	9	Unmodified	_GYGKFLIAF_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2845458984375	2	508.284203	1014.55385	0.078175	3.9735E-05	0.82353	0.00041859	0.9017	0.00045832	508.28438426850795	71.863	0.85892	71.863	71.64	72.499	0					69	29	3	0	0	0	0.1182	1	17116	17116		28.487	9.0478	1	785730			6105	1377	4115	4145	8335	8335					0.04715849799561056
GYGKFLIAF	9	Unmodified	_GYGKFLIAF_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2844543457031	2	508.284203	1014.55385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.246	1	72.302	71.802	72.802	0.055939								0	0	0	0.13043	1	16937	16937		28.487	11.545	1				6106	1377	4115	4145	8336	8336					0.04715849799561056
GYGLEYQQPF	10	Unmodified	_GYGLEYQQPF_					0	0	0		ENST00000468963.1_1_9:139301473-139302406:-|nuORF;nc|ENSG00000165689|Q96C92-4|ENTR1;nc|ENSG00000165689|Q96C92-3|ENTR1;CAMSAP1-SDCCAG3|1|fusion;nc|ENSG00000165689|Q96C92-2|ENTR1;ENSG00000165689|ENST00000357365|ENTR1	ENST00000468963.1_1_9:139301473-139302406:-|nuORF	ENST00000468963.1_1_9:139301473-139302406:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.281005859375	2	601.279846	1200.54514	0.68987	0.0004148	1.2021	0.00072277	1.8919	0.0011376	601.2805866242678	97.738	0.51337	97.738	97.481	97.995	0					55	23	3	0	0	0	0.37637	1	24820	24820		14.405	0.49933	1	228830			6107	101	4116	4146	8337	8337					-0.04711168627591178
GYIDNVTLI	9	Unmodified	_GYIDNVTLI_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.27423095703125	2	504.274032	1006.53351	0.24476	0.00012343	0.17098	8.6223E-05	0.41574	0.00020965	504.2740112829734	76.908	0.55652	76.908	76.647	77.204	0					43	19	3	0	0	0	0.037903	1	18497	18497		66.457	32.354	1	515120			6108	625	4117	4147	8338	8338					0.0305063434910835
GYIDNVTLI	9	Unmodified	_GYIDNVTLI_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.27410888671875	2	504.274032	1006.53351	0.33474	0.0001688	0.092281	4.6535E-05	0.42702	0.00021534	504.27399776442627	76.856	0.58466	76.895	76.695	77.279	0.03923					52	22	4	0	0	0	0.00015475	1	18335	18335		137.42	55.811	1	639460			6109	625	4117	4147	8339	8339					0.0305063434910835
GYIEDLKKF	9	Unmodified	_GYIEDLKKF_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.802978515625	2	556.802957	1111.59136	0.31822	0.00017719	-0.27545	-0.00015337	0.042768	2.3813E-05	556.8026902014916	51.109	0.4636	51.109	50.922	51.386	0					36	15	3	0	0	0	0.015341	1	10658	10658		61.602	27.2	1	256630			6110	749	4118	4148	8340	8340					0.040028962745282115
GYIEDLKKF	9	Unmodified	_GYIEDLKKF_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.8032836914062	2	556.802957	1111.59136	0.51384	0.00028611	-0.46369	-0.00025819	0.050145	2.7921E-05	556.8025669608181	51.023	0.56576	51.093	50.909	51.475	0.069874					40	22	3	0	0	0	0.012041	1	10495	10495		63.961	27.833	1	240860			6111	749	4118	4148	8341	8341					0.040028962745282115
GYIEKVHYL	9	Unmodified	_GYIEKVHYL_					0	0	0		ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.253662109375	2	561.303124	1120.5917	-0.096743	-5.4302E-05	0.50688	0.00028451	0.41013	0.00023021	561.3032989506323	44.075	0.44523	44.075	43.913	44.359	0					29	14	3	0	0	0	0.15403	1	8545	8545		34.402	16.255	1	88935			6112	1424	4119	4149	8342	8342					0.036223159943801875
GYIEKVHYL	9	Unmodified	_GYIEKVHYL_					0	0	0		ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2539672851562	2	561.303124	1120.5917	0.096185	5.3989E-05	0.098101	5.5065E-05	0.19429	0.00010905	561.3031540804071	43.986	0.43229	44.075	43.873	44.305	0.088924					25	14	3	0	0	0	0.23908	1	8388	8388		16.149	6.0752	1	77322			6113	1424	4119	4149	8343	8343					0.036223159943801875
GYIERPQLI	9	Unmodified	_GYIERPQLI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8087768554688	2	544.808574	1087.60259	0.54314	0.00029591	-0.12059	-6.57E-05	0.42255	0.00023021	544.8084716458812	53.997	0.66854	53.997	53.76	54.429	0					63	23	4	0	0	0	0.0046402	2	11548	11499;11548		85.642	45.692	1	1256900			6114	4001	4120	4150	8344;8345	8345					0.062297183686723656
GYIERPQLI	9	Unmodified	_GYIERPQLI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.8087768554688	2	544.808574	1087.60259	0.51732	0.00028184	-0.060131	-3.276E-05	0.45719	0.00024908	544.8084789639719	53.946	0.65899	54.011	53.789	54.448	0.065128					66	24	4	0	0	0	0.0046402	4	11399	11352;11399;11440;11507		85.642	37.893	1	995470			6115	4001	4120	4150	8346;8347;8348;8349	8347					0.062297183686723656
GYIESVQHI	9	Unmodified	_GYIESVQHI_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2694702148438	2	523.269281	1044.52401	0.3414	0.00017864	0.13896	7.2716E-05	0.48036	0.00025136	523.2692671858564	47.799	0.57569	47.799	47.583	48.159	0					56	19	4	0	0	0	8.9867E-09	1	9627	9627		160.52	99.159	1	940490			6116	2320	4121	4151	8350	8350					0.0035286606357658457
GYIESVQHI	9	Unmodified	_GYIESVQHI_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2692260742188	2	523.269281	1044.52401	0.45542	0.00023831	-0.021718	-1.1364E-05	0.43371	0.00022694	523.2692093340363	47.709	0.5128	47.789	47.574	48.087	0.080029					51	19	3	0	0	0	0.00034446	2	9512	9458;9512		134.3	72.938	1	924220			6117	2320	4121	4151	8351;8352	8352					0.0035286606357658457
GYIKGIFGF	9	Unmodified	_GYIKGIFGF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2757263183594	2	501.276378	1000.5382	-0.0086932	-4.3577E-06	-0.78709	-0.00039455	-0.79578	-0.00039891	501.2757379812564	72.665	0.9166	72.665	72.258	73.174	0					39	27	2	0	0	0	0.0099477	1	17227	17227		67.344	44.195	1	314470			6118	4238	4122	4152	8353	8353					0.037955632825287466
GYIPVEGAWTF	11	Unmodified	_GYIPVEGAWTF_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8397216796875	2	620.305864	1238.59717	-0.10138	-6.2887E-05	0.82714	0.00051308	0.72576	0.00045019	620.3066386397658	87.365	0.52315	87.365	87.141	87.664	0					38	19	3	0	0	0	0.27571	1	21691	21691		27.629	18.246	1	133560			6119	2079	4123	4153	8354	8354					-0.012580052138218889
GYIPVEGAWTF	11	Unmodified	_GYIPVEGAWTF_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.34130859375	2	620.305864	1238.59717	-0.10044	-6.2304E-05	0.81463	0.00050532	0.71419	0.00044301	620.3065572413917	87.333	0.45663	87.361	87.123	87.58	0.02758					29	18	2	0	0	0	0.1621	1	21509	21509		53.833	35.46	1	182380			6120	2079	4123	4153	8355	8355					-0.012580052138218889
GYIRGSWQF	9	Unmodified	_GYIRGSWQF_					0	0	0		ENSG00000131019|ENST00000367339|ULBP3	ENSG00000131019|ENST00000367339|ULBP3	ENSG00000131019|ENST00000367339|ULBP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7460327148438	2	557.277441	1112.54033	0.57301	0.00031933	-1.8596	-0.0010363	-1.2865	-0.00071696	557.7785284614597	57.554	0.25652	57.622	57.523	57.779	0.068375					14	8	3	0	0	0	0.25052	1	12475	12475		8.7454	6.4427	1	80733			6121	2509	4124	4154	8356	8356					-0.01144007979678463
GYISRSVAGSF	11	Unmodified	_GYISRSVAGSF_					0	0	0		ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF	ENST00000423527.5_1_3:31574490-31661461:+|nuORF	ENST00000423527.5_1_3:31574490-31661461:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3076782226562	2	572.293288	1142.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.096	1	75.141	74.641	75.641	0.044037								0	0	0	0.19725	1	17805	17805		27.629	5.8822	1				6122	3913	4125	4155	8357	8357					0.006439399836153825
GYISSAFLF	9	Unmodified	_GYISSAFLF_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.758056640625	2	502.758018	1003.50148	0.36506	0.00018354	0.18181	9.1407E-05	0.54687	0.00027494	502.75790521017177	87.593	0.40018	87.593	87.455	87.855	0					34	14	3	0	0	0	0.0046476	1	21789	21789		85.357	45.399	1	289670			6123	2532	4126	4156	8358	8358					-0.00012733334040149202
GYISSAFLF	9	Unmodified	_GYISSAFLF_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.75811767578125	2	502.758018	1003.50148	0.21956	0.00011038	0.27747	0.0001395	0.49703	0.00024988	502.75796476389985	87.598	0.53382	87.628	87.402	87.935	0.030037					39	19	3	0	0	0	0.0037915	1	21619	21619		104.8	62.705	1	269530			6124	2532	4126	4156	8359	8359					-0.00012733334040149202
GYKDLDLIF	9	Unmodified	_GYKDLDLIF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2890625	2	542.289682	1082.56481	0.55528	0.00030113	2.3931	0.0012978	2.9484	0.0015989	542.2894579242981	100.61	0.41763	100.66	100.41	100.83	0.042831					43	23	3	0	0	0	0.25979	1	25590	25590		11.64	0	1	59320			6125	1778	4127	4157	8360	8360					0.026832073831883463
GYKQYWCTF	9	Unmodified	_GYKQYWCTF_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.244140625	2	598.265684	1194.51682	0.29366	0.00017569	-0.56515	-0.00033811	-0.27149	-0.00016242	598.2654278725221	61.919	1.0077	61.919	61.714	62.722	0					48	38	2	0	0	0	0.14444	1	13951	13951		24.991	17.889	1	130650			6126	798	4128	4158	8361	8361					-0.07266189808524359
GYKQYWCTF	9	Unmodified	_GYKQYWCTF_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2660522460938	2	598.265684	1194.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.94	1	62.014	61.514	62.514	0.073421								0	0	0	0.16903	1	13811	13811		22.736	11.937	1				6127	798	4128	4158	8362	8362					-0.07266189808524359
GYKRYWECR	9	Unmodified	_GYKRYWECR_					0	0	0			REV__ENSG00000272899|ENST00000609480|ATP6V1FNB	REV__ENSG00000272899|ENST00000609480|ATP6V1FNB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.7877197265625	2	630.800757	1259.58696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.482	1	60.555	60.055	61.055	0.073421								0	0	0	0.26267	1	13367	13367		6.7232	1.8262	1		+		6128	11130	4129	4159	8363	8363					-0.03244891420058593
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2554016113281	2	491.255643	980.496732	0.17013	8.3576E-05	-0.16704	-8.2061E-05	0.0030833	1.5147E-06	491.25556902203834	51.937	0.6576	51.937	51.562	52.219	0					44	22	3	0	0	0	0.029291	3	10878	10878;10926;10979		51.63	31.176	1	320450			6129	2856	4130	4160	8364;8365;8366	8364					0.005703825231876181
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2557373046875	2	491.255643	980.496732	0.24297	0.00011936	-0.36385	-0.00017874	-0.12088	-5.9382E-05	491.25543639116773	51.862	0.55919	51.929	51.707	52.267	0.067173					43	19	3	0	0	0	0.017478	2	10731	10731;10792		60.074	39.62	1	234320			6130	2856	4130	4160	8367;8368	8367					0.005703825231876181
GYLATTLLF	9	Unmodified	_GYLATTLLF_					0	0	0			REV__TMEM201|p.S237I|1|0.16|ENSG00000188807|chr1:9601208-9601208|G/T|missense_variant	REV__TMEM201|p.S237I|1|0.16|ENSG00000188807|chr1:9601208-9601208|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.19329833984375	2	499.781493	997.548434	0.30407	0.00015197	0.57503	0.00028739	0.87911	0.00043936	499.78177017909593	90.499	0.35628	90.499	90.327	90.683	0					22	12	3	0	0	0	0.2446	1	22645	22645		11.64	3.7301	1	158200	+		6131	10777	4131	4161	8369	8369					0.049561262170982445
GYLHVFYDF	9	Unmodified	_GYLHVFYDF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000519245.1_1_6:112457126-112460429:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7749633789062	2	580.7742	1159.53385	0.3255	0.00018904	0.45661	0.00026519	0.78211	0.00045423	580.7742848594723	73.978	0.60003	73.978	73.77	74.37	0					37	21	2	0	0	0	0.0046476	1	17636	17636		85.357	68.414	1	461700			6132	1777	4132	4162	8370	8370					-0.03953945931061753
GYLHVFYDF	9	Unmodified	_GYLHVFYDF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000519245.1_1_6:112457126-112460429:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7735595703125	2	580.7742	1159.53385	0.60338	0.00035043	0.48599	0.00028225	1.0894	0.00063268	580.7739707544004	73.921	0.56492	73.97	73.778	74.342	0.048546					42	20	3	0	0	0	0.0065046	1	17448	17448		77.984	61.042	1	425320			6133	1777	4132	4162	8371	8371					-0.03953945931061753
GYLRSVFAL	9	Unmodified	_GYLRSVFAL_					0	0	0		ENST00000431036.1_1_22:45298215-45298323:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2922973632812	2	513.292559	1024.57057	0.74793	0.00038391	-1.7448	-0.0008956	-0.99689	-0.00051169	513.2914432106061	67.277	0.86482	67.342	67.011	67.876	0.065071					62	29	4	0	0	0	0.065576	1	15428	15428		39.95	14.55	1	491990			6134	1022	4133	4163	8372	8372					0.05926350685513171
GYMEGYYTF	9	Oxidation (M)	_GYM(Oxidation (M))EGYYTF_		GYM(1)EGYYTF		GYM(120)EGYYTF	0	0	1		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7257080078125	2	573.726058	1145.43756	0.46402	0.00026622	-0.73009	-0.00041887	-0.26606	-0.00015265	573.7255868759611	63.452	0.7009	63.452	63.195	63.896	0					68	24	4	0	0	0	0.0012363	2	14396	14396;14453		120.45	103.34	1	798130			6135	1665	4134	4164	8373;8374	8373		99			-0.12933881553317406
GYMEGYYTF	9	Oxidation (M)	_GYM(Oxidation (M))EGYYTF_		GYM(1)EGYYTF		GYM(150)EGYYTF	0	0	1		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.726318359375	2	573.726058	1145.43756	0.5844	0.00033529	0.32983	0.00018923	0.91423	0.00052452	573.72586903568	64.974	1.6441	64.974	64.264	65.909	0					136	59	4	0	0	0	1.1119E-05	4	14882	14831;14882;14924;14974		147.83	123.81	1	736680			6136	1665	4134	4164	8375;8376;8377;8378	8376		99			-0.12933881553317406
GYMEGYYTF	9	Oxidation (M)	_GYM(Oxidation (M))EGYYTF_		GYM(1)EGYYTF		GYM(110)EGYYTF	0	0	1		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7261352539062	2	573.726058	1145.43756	0.41217	0.00023647	-0.31965	-0.00018339	0.092516	5.3079E-05	573.7258081598881	63.379	0.99454	63.45	63.208	64.202	0.071014					76	36	4	0	0	0	0.0032694	2	14243	14243;14289		108	88.74	1	624390			6137	1665	4134	4164	8379;8380	8379		99			-0.12933881553317406
GYMEGYYTF	9	Oxidation (M)	_GYM(Oxidation (M))EGYYTF_		GYM(1)EGYYTF		GYM(130)EGYYTF	0	0	1		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7264404296875	2	573.726058	1145.43756	0.44495	0.00025528	0.23079	0.00013241	0.67574	0.00038769	573.7259804559685	64.928	1.2172	64.997	64.632	65.849	0.068909					116	46	4	0	0	0	0.00038046	5	14733	14661;14687;14733;14783;14832		133.7	118.86	1	707540			6138	1665	4134	4164	8381;8382;8383;8384;8385	8383		99			-0.12933881553317406
GYMEGYYTF	9	Unmodified	_GYMEGYYTF_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.3082885742188	2	565.7286	1129.44265	0.24607	0.00013921	0.75279	0.00042587	0.99886	0.00056508	565.7290143141994	71.566	0.42328	71.566	71.36	71.783	0					20	14	2	0	0	0	0.19376	1	16888	16888		19.257	11.347	1	106020			6139	1665	4134	4165	8386	8386					-0.11689577690708575
GYMEGYYTF	9	Unmodified	_GYMEGYYTF_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.3076782226562	2	565.7286	1129.44265	0.24953	0.00014117	0.46419	0.00026261	0.71373	0.00040378	565.7289042085049	71.557	0.4451	71.615	71.318	71.763	0.058578					21	15	2	0	0	0	0.24791	1	16720	16720		10.074	1.4806	1	137720			6140	1665	4134	4165	8387	8387					-0.11689577690708575
GYNPNRVFF	9	Unmodified	_GYNPNRVFF_					0	0	0		nc|ENSG00000165695|Q96MA6-2|AK8;ENSG00000165695|ENST00000298545|AK8;ENST00000476719.1_1_9:135601077-135753754:-|nuORF	nc|ENSG00000165695|Q96MA6-2|AK8	nc|ENSG00000165695|Q96MA6-2|AK8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2418823242188	2	557.277441	1112.54033	0.67306	0.00037508	0.064624	3.6014E-05	0.73768	0.00041109	557.2765532289939	55.144	0.49308	55.144	54.918	55.411	0					23	17	3	0	0	0	0.19376	1	11896	11896		25.399	12.868	1	105070			6141	4103	4135	4166	8388	8388					-0.01144007979678463
GYNPNRVFF	9	Unmodified	_GYNPNRVFF_					0	0	0		nc|ENSG00000165695|Q96MA6-2|AK8;ENSG00000165695|ENST00000298545|AK8;ENST00000476719.1_1_9:135601077-135753754:-|nuORF	nc|ENSG00000165695|Q96MA6-2|AK8	nc|ENSG00000165695|Q96MA6-2|AK8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2417602539062	2	557.277441	1112.54033	0.75358	0.00041995	-0.2518	-0.00014032	0.50178	0.00027963	557.2772072253491	55.099	0.26072	55.164	55.053	55.314	0.065128					15	9	2	0	0	0	0.18479	1	11739	11739		26.884	9.7971	1	79771			6142	4103	4135	4166	8389	8389					-0.01144007979678463
GYNSEWKYTF	10	Unmodified	_GYNSEWKYTF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|133|3|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|133|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.7904052734375	2	647.790578	1293.5666	-0.10219	-6.6196E-05	0.41971	0.00027188	0.31752	0.00020569	647.7907012333357	90.676	0.80425	90.712	90.45	91.254	0.035446					67	30	3	0	0	0	0.28643	1	22543	22543		24.021	24.021	1	791420	+		6143	12718	4136	4167	8390	8390					-0.06843783598856135
GYNTFDRLI	9	Unmodified	_GYNTFDRLI_					0	0	0			REV__ENSG00000141994|ENST00000309061|DUS3L	REV__ENSG00000141994|ENST00000309061|DUS3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7826538085938	2	549.782556	1097.55056	0.10229	5.6237E-05	-1.7758	-0.0009763	-1.6735	-0.00092006	549.7823598234188	46.466	0.96695	46.466	45.617	46.584	0					85	38	3	0	0	0	0.19307	1	9071	9071		19.362	3.2128	1	235500	+		6144	9419	4137	4168	8391	8391					0.005685549549070856
GYNTFDRLI	9	Unmodified	_GYNTFDRLI_					0	0	0			REV__ENSG00000141994|ENST00000309061|DUS3L	REV__ENSG00000141994|ENST00000309061|DUS3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7825317382812	2	549.782556	1097.55056	0.24706	0.00013583	0.064302	3.5352E-05	0.31136	0.00017118	549.7826372533951	51.886	1.1462	51.886	51.358	52.504	0					90	39	4	0	0	0	0.031665	1	10891	10891		49.933	4.2334	1	1074400	+		6145	9419	4137	4168	8392	8392					0.005685549549070856
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(120)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7579345703125	2	568.757692	1135.50083	-0.08667	-4.9294E-05	-0.1697	-9.6519E-05	-0.25637	-0.00014581	568.7577074669721	58.672	1.4556	58.672	58.263	59.719	0					96	54	3	0	0	0	0.0010793	2	12961	12901;12961		122.18	78.321	1	296180			6146	4211	4138	4169	8393;8394	8394		252			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(80)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7578125	2	568.757692	1135.50083	0.32843	0.0001868	-0.37204	-0.0002116	-0.043612	-2.4805E-05	568.7573204414946	56.902	0.68559	56.969	56.706	57.391	0.066452					48	25	3	0	0	0	0.005983	1	12271	12271		79.596	54.197	1	354490			6147	4211	4138	4169	8395	8395		252			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(83)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7578125	2	568.757692	1135.50083	0.16166	9.1948E-05	-0.23595	-0.0001342	-0.074286	-4.2251E-05	568.757669432792	58.465	1.4126	58.536	58.184	59.597	0.070477					85	52	2	0	0	0	0.0050339	2	12764	12764;12903		82.529	42.572	1	328730			6148	4211	4138	4169	8396;8397	8396		252			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_					0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	568.757692	1135.50083	0.20125	0.00011446	-0.1507	-8.5709E-05	0.050558	2.8755E-05	568.7574382242516	56.957	0.56468	56.957	56.702	57.267	0	-0.0058299	0.00011911	NaN	79.596	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392680			6149	4211	4138	4169				252			-0.06149896045417336
GYPEVALHF	9	Unmodified	_GYPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.761474609375	2	516.761092	1031.50763	0.59074	0.00030527	-0.063696	-3.2916E-05	0.52704	0.00027236	516.7611235609361	64.391	0.9505	64.391	64.137	65.088	0					77	33	4	0	0	0	0.01209	1	14680	14680		74.423	57.48	1	985940			6150	2175	4139	4170	8398	8398					-0.006862151025416097
GYPEVALHF	9	Unmodified	_GYPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7611694335938	2	516.761092	1031.50763	0.46356	0.00023955	-0.055144	-2.8496E-05	0.40841	0.00021105	516.7610294991033	64.283	0.90015	64.354	64.115	65.015	0.071014					71	32	3	0	0	0	0.0060931	1	14553	14553		85.357	73.716	1	917560			6151	2175	4139	4170	8399	8399					-0.006862151025416097
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.802978515625	2	555.80276	1109.59097	0.17534	9.7452E-05	-0.11069	-6.152E-05	0.064649	3.5932E-05	555.8027908545015	72.123	1.45	72.123	71.834	73.284	0					135	50	4	0	0	0	0.0040275	4	17074	17025;17074;17338;17399		103.35	65.38	1	8432300			6152	5411	4140	4171	8400;8401;8402;8403	8401					0.04055521345298985
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2882690429688	2	555.80276	1109.59097	0.25612	0.00014235	0.41501	0.00023066	0.67113	0.00037302	555.802931342573	73.461	0.86017	73.461	73.284	74.144	0					42	31	2	0	0	0	0.12752	1	17456	17456		39.95	13.066	1	247880			6153	5411	4140	4171	8404	8404					0.04055521345298985
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.802734375	2	555.80276	1109.59097	0.40384	0.00022446	-0.29946	-0.00016644	0.10438	5.8015E-05	555.802630923057	72.066	1.477	72.122	71.842	73.319	0.055939					154	51	4	0	0	0	0.0040275	4	16850	16850;16898;17163;17217		103.35	65.38	1	6542400			6154	5411	4140	4171	8405;8406;8407;8408	8405					0.04055521345298985
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8016967773438	2	555.80276	1109.59097	0.62182	0.00034561	-0.056052	-3.1154E-05	0.56576	0.00031445	555.8026410713413	73.788	0.21432	73.84	73.723	73.937	0.052567					10	7	2	0	0	0	0.28472	1	17430	17430		8.7454	0.15213	1	69117			6155	5411	4140	4171	8409	8409					0.04055521345298985
GYQAIQQQS	9	Unmodified	_GYQAIQQQS_					0	0	0		ENSG00000166503|ENST00000299633|HDGFL3	ENSG00000166503|ENST00000299633|HDGFL3	ENSG00000166503|ENST00000299633|HDGFL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2350158691406	2	511.748713	1021.48287	-0.062243	-3.1853E-05	0.22717	0.00011625	0.16493	8.4402E-05	511.74887784398084	40.238	0.43309	40.328	40.113	40.546	0.089645					26	16	2	0	0	0	0.25579	1	7187	7187		4.3292	0.73274	1	41997			6156	4163	4141	4172	8410	8410					-0.027008949758965173
GYQRRWFVL	9	Unmodified	_GYQRRWFVL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENSG00000110048|ENST00000263847|OSBP	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.892578125	3	408.89273	1223.65636	0.61801	0.0002527	-0.5826	-0.00023822	0.035414	1.448E-05	408.89245402978736	55.707	1.0444	55.707	55.467	56.512	0					56	37	2	0	0	0	0.26104	1	12032	12032		11.495	3.5493	1	456720			6157	4993	4142	4173	8411	8411					0.05347935591044006
GYQRRWFVL	9	Unmodified	_GYQRRWFVL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENSG00000110048|ENST00000263847|OSBP	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.8926086425781	3	408.89273	1223.65636	0.16533	6.7602E-05	-0.097669	-3.9936E-05	0.067661	2.7666E-05	408.89264076097766	55.677	0.72836	55.742	55.432	56.16	0.065128					67	21	4	0	0	0	0.17428	2	11885	11885;11934		21.537	13.381	1	573810			6158	4993	4142	4173	8412;8413	8412					0.05347935591044006
GYRHGVAR	8	Unmodified	_GYRHGVAR_					0	0	0			REV__ENSG00000164404|ENST00000687138|GDF9	REV__ENSG00000164404|ENST00000687138|GDF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.24786376953125	2	458.249018	914.483482	0.132	6.049E-05	0.5292	0.0002425	0.6612	0.00030299	458.2482391139355	36.702	0.3245	36.783	36.662	36.987	0.081715					30	13	3	0	0	0	0.53858	1	6193	6193		2.3027	0.4585	1	29632	+		6159	9995	4143	4174	8414	8414					0.02281989254470318
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.745849609375	2	557.745639	1113.47673	0.41258	0.00023011	-0.21956	-0.00012246	0.19302	0.00010766	557.7455361440742	56.984	1.5672	56.984	56.65	58.217	0					180	56	5	0	0	0	2.3187E-06	8	12444	12399;12444;12493;12535;12580;12628;12680;12732		156.16	118.18	1	8672500			6160	1225;2837	4144	4175	8415;8416;8417;8418;8419;8420;8421;8422	8416					-0.07547413207407772
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7982788085938	2	557.745639	1113.47673	0.099644	5.5576E-05	0.51161	0.00028535	0.61125	0.00034092	557.7461612071908	58.652	0.6465	58.652	58.256	58.903	0					41	23	2	0	0	0	0.21603	1	12865	12865		20.454	7.4112	1	83743			6161	1225;2837	4144	4175	8423	8423					-0.07547413207407772
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7457885742188	2	557.745639	1113.47673	0.58201	0.00032461	-0.4008	-0.00022354	0.18121	0.00010107	557.7454384786492	56.924	1.4262	56.991	56.706	58.132	0.066448					160	53	5	0	0	0	2.3187E-06	7	12291	12247;12291;12341;12385;12429;12475;12532		156.16	123.37	1	7531700			6162	1225;2837	4144	4175	8424;8425;8426;8427;8428;8429;8430	8425					-0.07547413207407772
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7984008789062	2	557.745639	1113.47673	0.42039	0.00023447	0.23658	0.00013195	0.65697	0.00036642	557.7457452945223	58.222	0.72726	58.292	58.136	58.863	0.070477					42	25	2	0	0	0	0.23598	1	12693	12693		15.847	4.2069	1	68937			6163	1225;2837	4144	4175	8431	8431					-0.07547413207407772
GYSHAEDVMLN	11	Unmodified	_GYSHAEDVMLN_					0	0	0			REV__tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	REV__tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3372802734375	2	618.271695	1234.52884	0.098738	6.1047E-05	4.1351	0.0025566	4.2338	0.0026176	618.2740100201291	67.266	0.36012	67.266	67.068	67.428	0					30	13	3	0	0	0	0.30659	1	15574	15574		17.113	1.8644	1	156610	+		6164	13194	4145	4176	8432	8432					-0.07904617855979268
GYSIHTYLW	9	Unmodified	_GYSIHTYLW_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2796630859375	2	570.279649	1138.54475	0.59676	0.00034032	-0.19064	-0.00010872	0.40612	0.0002316	570.2792865379005	65.318	0.64894	65.318	65.112	65.761	0					42	23	3	0	0	0	0.21398	1	15019	15019		16.942	3.0362	1	235760			6165	4711	4146	4177	8433	8433					-0.018985435567856257
GYSIHTYLW	9	Unmodified	_GYSIHTYLW_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.280029296875	2	570.279649	1138.54475	0.43368	0.00024732	-0.26103	-0.00014886	0.17265	9.8457E-05	570.2794135258945	65.279	0.60272	65.348	65.188	65.79	0.068916					44	23	4	0	0	0	0.1182	1	14820	14820		28.487	13.649	1	281480			6166	4711	4146	4177	8434	8434					-0.018985435567856257
GYSLIGNPVAR	11	Unmodified	_GYSLIGNPVAR_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7644653320312	2	573.81693	1145.61931	0.313	0.00017961	-0.73567	-0.00042214	-0.42266	-0.00024253	573.816569972901	55.758	0.44551	55.824	55.646	56.092	0.065132					31	15	3	0	0	0	0.31001	1	11995	11995		5.7319	0.43497	1	118720			6167	1781	4147	4178	8435	8435					0.052322192545943835
GYTPRGNSIF	10	Unmodified	_GYTPRGNSIF_					0	0	0		ENST00000374829.2_1_1:21901133-21904138:+|nuORF;nc|ENSG00000162551|P05186-2|ALPL;nc|ENSG00000162551|P05186-3|ALPL;ENSG00000162551|ENST00000374840|ALPL	ENST00000374829.2_1_1:21901133-21904138:+|nuORF	ENST00000374829.2_1_1:21901133-21904138:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2789306640625	2	556.28018	1110.54581	0.23648	0.00013155	-3.5909	-0.0019976	-3.3544	-0.001866	556.2781235942978	105.27	0.097443	105.27	105.23	105.32	0					13	9	2	0	0	0	0.45945	1	27117	27117		2.9952	0.10602	1	42517			6168	3835	4148	4179	8436	8436					-0.00504329187856456
GYVPTENLRF	10	Unmodified	_GYVPTENLRF_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2435302734375	2	598.308938	1194.60332	-0.10037	-6.005E-05	-0.18362	-0.00010986	-0.28399	-0.00016991	598.3085887432844	58.902	0.16504	58.902	58.79	58.955	0					9	5	2	0	0	0	0.31616	1	13028	13028		10.074	0.6908	1	126590			6169	3984;6533	4149	4180	8437	8437					0.013805130176933744
GYVQRKRR	8	Unmodified	_GYVQRKRR_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.816650390625	2	531.817599	1061.62064	0.68072	0.00036202	-2.2376	-0.00119	-1.5569	-0.00082797	531.8164059031296	84.899	0.77345	84.899	84.686	85.459	0					41	29	2	0	0	0	0.53817	1	20913	20913		2.5775	0	1	173770	+		6170	9536	4150	4181	8438	8438					0.09229898134049108
GYVQSWQGW	9	Unmodified	_GYVQSWQGW_					0	0	0			REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3087158203125	2	555.753798	1109.49304	0.90548	0.00050323	-0.0095115	-5.2861E-06	0.89597	0.00049794	555.7524813513868	85.314	0.48135	85.337	85.239	85.72	0.023125					31	19	2	0	0	0	0.2491	1	20975	20975		4.756	0	1	83645	+		6171	9660	4151	4182	8439	8439					-0.057322872506802014
GYVSLFPLL	9	Unmodified	_GYVSLFPLL_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.79229736328125	2	504.791861	1007.56917	0.27138	0.00013699	0.20751	0.00010475	0.47889	0.00024174	504.79196661883685	101.17	0.40332	101.17	100.93	101.33	0					28	22	2	0	0	0	0.26684	1	25911	25911		10.824	3.5347	1	95912			6172	1894	4152	4183	8440	8440					0.06568716596768809
GYVSLFPLL	9	Unmodified	_GYVSLFPLL_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.8091735839844	2	504.791861	1007.56917	0.39834	0.00020108	0.21329	0.00010767	0.61163	0.00030875	504.7919081750585	101.11	0.39697	101.15	100.99	101.38	0.042839					39	22	4	0	0	0	0.25174	1	25699	25699		7.2892	2.96	1	64680			6173	1894	4152	4183	8441	8441					0.06568716596768809
GYVSSHFYRQ	10	Unmodified	_GYVSSHFYRQ_					0	0	0		ENST00000531406.1_1_14:24661338-24662280:-|nuORF;nc|ENSG00000100926|O15321-2|TM9SF1;ENSG00000100926|ENST00000261789|TM9SF1	ENST00000531406.1_1_14:24661338-24662280:-|nuORF	ENST00000531406.1_1_14:24661338-24662280:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.82928466796875	3	415.2	1242.57817	-0.39905	-0.00016568	0.87399	0.00036288	0.47494	0.0001972	415.2004771825332	40.828	0.66964	40.918	40.626	41.295	0.089645					53	25	3	0	0	0	0.31712	1	7418	7418		3.5871	0	1	49024			6174	1223	4153	4184	8442	8442					-0.03341541784857327
GYVVWQEVF	9	Unmodified	_GYVVWQEVF_					0	0	0		ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000568777.5_1_15:72638642-72646100:-|nuORF	ENST00000568777.5_1_15:72638642-72646100:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.79443359375	2	563.782025	1125.5495	0.18285	0.00010309	1.5834	0.00089267	1.7662	0.00099576	563.7826127618282	86.316	0.65517	86.316	86.055	86.71	0					38	24	2	0	0	0	0.12752	1	21327	21327		39.95	21.803	1	381270			6175	5548	4154	4185	8443	8443					-0.008256594139993467
GYVVWQEVF	9	Unmodified	_GYVVWQEVF_					0	0	0		ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000568777.5_1_15:72638642-72646100:-|nuORF	ENST00000568777.5_1_15:72638642-72646100:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7826538085938	2	563.782025	1125.5495	0.37208	0.00020977	-2.6388	-0.0014877	-2.2667	-0.0012779	563.7826349950718	86.228	0.55119	86.253	86.035	86.586	0.025169					59	19	4	0	0	0	0.028282	1	21186	21186		69.105	35.002	1	522610			6176	5548	4154	4185	8444	8444					-0.008256594139993467
GYYNGKWEFL	10	Unmodified	_GYYNGKWEFL_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.8032836914062	2	638.803488	1275.59242	0.62595	0.00039986	-0.70321	-0.00044921	-0.077255	-4.9351E-05	638.8032372280154	66.771	0.55329	66.771	66.635	67.188	0					45	20	3	0	0	0	0.15743	2	15417	15417;15467		38.615	26.083	1	295080			6177	3227	4155	4186	8445;8446	8445					-0.03434889356572057
GYYNGKWEFL	10	Unmodified	_GYYNGKWEFL_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.8047485351562	2	638.803488	1275.59242	0.62173	0.00039717	-0.5366	-0.00034278	0.085136	5.4385E-05	638.8029661120295	66.763	0.69823	66.828	66.65	67.348	0.065071					49	25	3	0	0	0	0.06541	2	15278	15278;15295		53.404	31.867	1	329830			6178	3227	4155	4186	8447;8448	8447					-0.03434889356572057
GYYWTEGQW	9	Unmodified	_GYYWTEGQW_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.251220703125	2	595.251089	1188.48762	0.10062	5.9892E-05	2.7309	0.0016256	2.8315	0.0016855	595.2508796615887	86.6	0.46921	86.628	86.39	86.859	0.027573					68	21	4	0	0	0	0.10067	1	21286	21286		32.305	3.2239	1	744590	+		6179	8202	4156	4187	8449	8449					-0.09908010833146363
HAADPIITR	9	Unmodified	_HAADPIITR_					0	0	0		nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.1949768066406	2	497.277441	992.540328	-0.080555	-4.0058E-05	0.23358	0.00011616	0.15303	7.6098E-05	497.2774754100308	26.285	0.49017	26.285	26.115	26.606	0					76	38	3	0	0	0	0.25376	1	3235	3235		6.2058	6.2058	1	40573			6180	4399	4157	4188	8450	8450					0.04375992020334252
HAADPIITR	9	Unmodified	_HAADPIITR_					0	0	0		nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2776184082031	2	497.277441	992.540328	-2.1615E-05	-1.0748E-08	0.30167	0.00015002	0.30165	0.00015001	497.2774972764036	26.161	0.42774	26.252	26.092	26.52	0.091507					69	37	2	0	0	0	0.30397	1	3041	3041		6.2058	3.6283	1	41107			6181	4399	4157	4188	8451	8451					0.04375992020334252
HAAFPELQV	9	Unmodified	_HAAFPELQV_					0	0	0		nc|ENSG00000172456|Q96C11-2|FGGY;nc|ENSG00000172456|Q96C11-6|FGGY;ENST00000495718.5_1_1:59787394-60091722:+|nuORF;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY	nc|ENSG00000172456|Q96C11-2|FGGY	nc|ENSG00000172456|Q96C11-2|FGGY	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.23406982421875	2	506.266542	1010.51853	0.24182	0.00012242	-0.099569	-5.0409E-05	0.14225	7.2015E-05	506.26650161762933	57.952	0.42309	57.952	57.768	58.191	0					30	14	3	0	0	0	0.16392	1	12754	12754		26.268	9.3258	1	132050			6182	4496	4158	4189	8452	8452					0.013691872717686238
HAAFPELQV	9	Unmodified	_HAAFPELQV_					0	0	0		nc|ENSG00000172456|Q96C11-2|FGGY;nc|ENSG00000172456|Q96C11-6|FGGY;ENST00000495718.5_1_1:59787394-60091722:+|nuORF;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY	nc|ENSG00000172456|Q96C11-2|FGGY	nc|ENSG00000172456|Q96C11-2|FGGY	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2340087890625	2	506.266542	1010.51853	0.23943	0.00012122	0.52538	0.00026598	0.76482	0.0003872	506.2667154294869	57.853	0.33163	57.921	57.802	58.134	0.068375					24	12	3	0	0	0	0.21622	1	12583	12583		21.537	9.0054	1	124110			6183	4496	4158	4189	8453	8453					0.013691872717686238
HAAFSSRHF	9	Unmodified	_HAAFSSRHF_					0	0	0		ENST00000564808.6_1_16:19125342-19138551:+|nuORF;ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000564808.6_1_16:19125342-19138551:+|nuORF	ENST00000564808.6_1_16:19125342-19138551:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.259765625	2	530.259582	1058.50461	-0.018473	-9.7954E-06	1.2074	0.00064024	1.1889	0.00063045	530.2599785932204	26.072	0.12523	26.164	26.079	26.204	0.091507					12	10	2	0	0	0	0.33356	1	3032	3032		2.3027	0	1	11612			6184	5522	4159	4190	8454	8454					-0.022300454366813938
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENST00000457750.1_1_3:195341833-195346985:+|nuORF;nc|ENSG00000176945|Q8N307-3|MUC20;ENSG00000176945|ENST00000447234|MUC20	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.26141357421875	2	492.261456	982.50836	0.28862	0.00014207	-0.28564	-0.00014061	0.0029754	1.4647E-06	492.261320247902	37.084	0.63634	37.084	36.833	37.469	0					61	24	4	0	0	0	0.17428	1	6446	6446		21.537	14.248	1	205840			6185	4680	4160	4191	8455	8455					0.016405795465175288
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENST00000457750.1_1_3:195341833-195346985:+|nuORF;nc|ENSG00000176945|Q8N307-3|MUC20;ENSG00000176945|ENST00000447234|MUC20	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7264099121094	2	492.261456	982.50836	0.27927	0.00013747	-0.33118	-0.00016303	-0.051913	-2.5555E-05	492.26135961297393	36.992	0.65585	37.073	36.813	37.469	0.081715					52	25	3	0	0	0	0.11557	1	6260	6260		41.84	25.992	1	174450			6186	4680	4160	4191	8456	8456					0.016405795465175288
HAAPFQNIL	9	Unmodified	_HAAPFQNIL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1;CYFIP1|p.R1034Q|1|0.45|ENSG00000273749|chr15:22875213-22875213|C/T|missense_variant;ENST00000522892.1_1_5:156788429-156810457:+|nuORF;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.77435302734375	2	505.774534	1009.53451	0.23965	0.00012121	0.071064	3.5942E-05	0.31072	0.00015715	505.7744329606829	57.142	0.68417	57.142	56.885	57.569	0					43	24	3	0	0	0	0.26684	1	12478	12478		10.824	1.4765	1	149590			6187	611	4161	4192	8457	8457					0.03012893508673642
HAAPFQNIL	9	Unmodified	_HAAPFQNIL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1;CYFIP1|p.R1034Q|1|0.45|ENSG00000273749|chr15:22875213-22875213|C/T|missense_variant;ENST00000522892.1_1_5:156788429-156810457:+|nuORF;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7743225097656	2	505.774534	1009.53451	0.35074	0.00017739	-0.18122	-9.1654E-05	0.16952	8.5739E-05	505.77432532867573	57.094	0.44778	57.162	56.945	57.393	0.068371					32	17	3	0	0	0	0.29576	1	12337	12337		7.2892	2.5332	1	150810			6188	611	4161	4192	8458	8458					0.03012893508673642
HACHLLELL	9	Unmodified	_HACHLLELL_					0	0	0			REV__nc|ENSG00000179583|P33076|CIITA	REV__nc|ENSG00000179583|P33076|CIITA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.27197265625	2	524.784044	1047.55354	0.32646	0.00017132	-3.0938	-0.0016236	-2.7674	-0.0014523	524.7822964773774	76.313	0.14346	76.313	76.272	76.415	0					6	4	2	0	0	0	0.2446	1	18326	18326		11.64	0.81637	1	146470	+		6189	10479	4162	4193	8459	8459					0.03166106808043878
HADDTQPARL	10	Unmodified	_HADDTQPARL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1496634-1499487:-|nuORF;ENST00000565092.6_1_16:1496634-1499128:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2752075195312	2	562.278169	1122.54179	-0.21164	-0.000119	-2.0919	-0.0011762	-2.3035	-0.0012952	562.2771819347201	23.66	0.29482	23.66	23.524	23.818	0					37	26	2	0	0	0	0.45945	1	2460	2460		2.9952	0.26005	1	23052			6190	1359	4163	4194	8460	8460					-0.014584186815682187
HADHSSLTL	9	Unmodified	_HADHSSLTL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.74346923828125	2	490.743431	979.472308	-0.15804	-7.7558E-05	0.22129	0.0001086	0.063248	3.1038E-05	490.7434454746847	29.181	1.4147	29.181	28.929	30.343	0					154	74	4	0	0	0	0.0097093	3	4056	4020;4056;4099		68.081	33.978	1	365690			6191	982	4164	4195	8461;8462;8463	8462					-0.01824877630338051
HADHSSLTL	9	Unmodified	_HADHSSLTL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7434997558594	2	490.743431	979.472308	-0.14554	-7.1423E-05	0.27863	0.00013674	0.13309	6.5315E-05	490.74349696245093	29.056	1.3597	29.134	28.912	30.271	0.078289					178	85	4	0	0	0	0.0032694	2	3895	3895;3933		108	65.902	1	411670			6192	982	4164	4195	8464;8465	8464					-0.01824877630338051
HADLLLFVC	9	Unmodified	_HADLLLFVC_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3034057617188	2	515.773145	1029.53174	-0.16603	-8.5631E-05	2.6825	0.0013835	2.5164	0.0012979	515.7744588211341	40.76	0.32207	40.849	40.717	41.039	0.089645					19	12	2	0	0	0	0.25579	1	7377	7377		4.3292	0.73274	1	34388			6193	89	4165	4196	8466	8466					0.01815302059503665
HADLSSSAAI	10	Unmodified	_HADLSSSAAI_					0	0	0			REV__ENST00000559700.5_1_15:78584919-78588040:-|nuORF	REV__ENST00000559700.5_1_15:78584919-78588040:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2431640625	2	486.243264	970.471974	-0.28328	-0.00013775	0.21563	0.00010485	-0.067652	-3.2895E-05	486.2434136728925	31.217	1.4883	31.291	31.026	32.514	0.073782					178	72	4	0	0	0	0.44246	1	4657	4657		6.2058	0	1	1548300	+		6194	9369	4166	4197	8467	8467					-0.01444297350190027
HADPHSIDTL	10	Unmodified	_HADPHSIDTL_					0	0	0			REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF	REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.266845703125	2	553.26727	1104.51999	-0.079557	-4.4016E-05	-0.064357	-3.5606E-05	-0.14391	-7.9623E-05	553.2676522191151	24.818	4.3	24.818	24.523	28.823	0					763	304	5	0	0	0	0.38104	7	3530	2737;3530;3570;3603;3650;3693;3865		13.906	0.86358	1	9055400	+		6195	11492	4167	4198	8468;8469;8470;8471;8472;8473;8474	8469					-0.028092234301539065
HADPHSIDTL	10	Unmodified	_HADPHSIDTL_					0	0	0			REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF	REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.26708984375	2	553.26727	1104.51999	0.16038	8.8735E-05	-0.1755	-9.7096E-05	-0.015111	-8.3605E-06	553.2675990365626	24.663	2.8333	24.759	24.511	27.344	0.096075					687	235	6	0	0	0	0.38104	1	2568	2568		13.906	0.86358	1	9272800	+		6196	11492	4167	4198	8475	8475					-0.028092234301539065
HADPHSIDTL	10	Unmodified	_HADPHSIDTL_					0	0	0			REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF	REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2672119140625	2	553.26727	1104.51999	0.071014	3.929E-05	-0.0036331	-2.0101E-06	0.067381	3.728E-05	553.2671941370072	27.49	0.62024	27.576	27.491	28.112	0.0867					92	44	3	0	0	0	0.33099	1	3437	3437		19.257	1.1106	1	74607	+		6197	11492	4167	4198	8476	8476					-0.028092234301539065
HADPTELAL	9	Unmodified	_HADPTELAL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.74810791015625	2	483.748182	965.481811	-0.082955	-4.0129E-05	0.12226	5.9142E-05	0.039303	1.9013E-05	483.74816355499024	49.175	0.93088	49.175	48.945	49.876	0					74	32	4	0	0	0	0.22344	2	10026	10026;10073		15.847	4.2069	1	802840			6198	2477	4168	4199	8477;8478	8477					-0.002311093448156498
HADPTELAL	9	Unmodified	_HADPTELAL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7481384277344	2	483.748182	965.481811	-0.16138	-7.8066E-05	0.18063	8.7379E-05	0.019251	9.3128E-06	483.7481756535089	49.079	0.79087	49.155	48.93	49.721	0.076607					68	28	4	0	0	0	0.18364	1	9917	9917		20.454	5.8719	1	617190			6199	2477	4168	4199	8479	8479					-0.002311093448156498
HADQAEIRSL	10	Unmodified	_HADQAEIRSL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2938842773438	2	570.293819	1138.57309	-0.1594	-9.0902E-05	0.057511	3.2798E-05	-0.10189	-5.8104E-05	570.2939514522245	30.655	2.3976	30.655	30.404	32.801	0					300	113	5	0	0	0	1.9057000000000002E-24	8	4480	4440;4480;4524;4564;4607;4743;4803;4853		213.63	113.54	1	1783400			6200	2097;2099	4169	4200	8480;8481;8482;8483;8484;8485;8486;8487	8481					0.009341543525124507
HADQAEIRSL	10	Unmodified	_HADQAEIRSL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2938842773438	2	570.293819	1138.57309	-0.10944	-6.2412E-05	0.045494	2.5945E-05	-0.063944	-3.6467E-05	570.2939224304066	30.625	1.6898	30.701	30.386	32.075	0.075403					267	87	5	0	0	0	2.0307E-16	7	4344	4306;4344;4384;4421;4462;4501;4605		188.38	107.7	1	1654200			6201	2097;2099	4169	4200	8488;8489;8490;8491;8492;8493;8494	8489					0.009341543525124507
HADQEYVL	8	Unmodified	_HADQEYVL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.732421875	2	487.732532	973.45051	-0.4925	-0.00024021	0.31339	0.00015285	-0.17911	-8.7359E-05	487.73265802915665	40.748	1.0887	40.748	40.505	41.594	0					90	38	4	0	0	0	0.51415	2	7536	7487;7536		10.824	4.4698	1	358370			6202	1750	4170	4201	8495;8496	8496					-0.03727682378894315
HADQEYVL	8	Unmodified	_HADQEYVL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7326965332031	2	487.732532	973.45051	-0.34418	-0.00016787	0.43355	0.00021145	0.08937	4.3589E-05	487.7326689610565	40.662	0.90993	40.751	40.518	41.428	0.089645					76	33	3	0	0	0	0.53202	1	7378	7378		6.7232	0.36906	1	305250			6203	1750	4170	4201	8497	8497					-0.03727682378894315
HADVKPDNV	9	Unmodified	_HADVKPDNV_					0	0	0		ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7510986328125	2	497.751256	993.487959	-0.25034	-0.00012461	0.17603	8.762E-05	-0.074306	-3.6986E-05	497.7512842938208	19.05	0.24352	19.05	18.935	19.178	0					46	29	2	0	0	0	0.33849	1	1282	1282		1.6526	0.85899	1	20029			6204	5617	4171	4202	8498	8498					-0.009045911132830042
HAEAVEQRL	9	Unmodified	_HAEAVEQRL_					0	0	0		ENST00000578774.1_1_17:38517261-38520175:+|nuORF	ENST00000578774.1_1_17:38517261-38520175:+|nuORF	ENST00000578774.1_1_17:38517261-38520175:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7776489257812	2	526.777805	1051.54106	-0.19679	-0.00010366	0.0012137	6.3933E-07	-0.19557	-0.00010302	526.7777783043016	26.412	0.64907	26.412	26.224	26.873	0					108	48	3	0	0	0	0.28919	1	3266	3266		8.1555	0	1	73010			6205	7210	4172	4203	8499	8499					0.017347866693853575
HAEAVEQRL	9	Unmodified	_HAEAVEQRL_					0	0	0		ENST00000578774.1_1_17:38517261-38520175:+|nuORF	ENST00000578774.1_1_17:38517261-38520175:+|nuORF	ENST00000578774.1_1_17:38517261-38520175:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	526.777805	1051.54106	-0.19679	-0.00010366	0.0012137	6.3933E-07	-0.19557	-0.00010302	526.7777783043016	26.412	0.64907	26.412	26.224	26.873	0	0.031869	-1.1807E-05	NaN	8.1555	108	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73010			6206	7210	4172	4203							0.017347866693853575
HAEGQLSFIQ	10	Unmodified	_HAEGQLSFIQ_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.759033203125	2	565.285463	1128.55637	0.011861	6.7046E-06	-3.1542	-0.001783	-3.1424	-0.0017763	565.2834526412825	22.512	0.2063	22.614	22.517	22.724	0.10178					24	19	2	0	0	0	0.31844	1	2037	2037		1.1933	0.39971	1	16760			6207	2281	4173	4204	8500	8500					-0.002763465334282955
HAEIAQPLL	9	Unmodified	_HAEIAQPLL_					0	0	0		ENSG00000112796|ENST00000371383|ENPP5	ENSG00000112796|ENST00000371383|ENPP5	ENSG00000112796|ENST00000371383|ENPP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.28228759765625	2	496.282192	990.549831	0.31049	0.00015409	0.023229	1.1528E-05	0.33372	0.00016562	496.2821621481474	50.484	0.46722	50.484	50.264	50.731	0					27	16	2	0	0	0	0.24767	1	10459	10459		13.042	0	1	136080			6208	1779	4174	4205	8501	8501					0.054177603058633395
HAEQERVAL	9	Unmodified	_HAEQERVAL_					0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2789916992188	2	526.777805	1051.54106	-0.15789	-8.3172E-05	0.02442	1.2864E-05	-0.13347	-7.0309E-05	526.777818717486	26.256	0.71118	26.348	26.103	26.814	0.091507					117	59	3	0	0	0	0.26104	1	3074	3074		11.495	3.3392	1	64644			6209	1019	4175	4206	8502	8502					0.0173478666936262
HAEQGELLSR	10	Unmodified	_HAEQGELLSR_					0	0	0			REV__CON__P19001	REV__CON__P19001	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2935180664062	2	570.293819	1138.57309	-0.10944	-6.2412E-05	0.045494	2.5945E-05	-0.063944	-3.6467E-05	570.2939224304066	30.625	1.6898	30.701	30.386	32.075	0.075403					267	87	5	0	0	0	0.43771	1	4703	4703		7.1017	0	1	1654200	+	+	6210	7839	4176	4207	8503	8503					0.009341543525124507
HAFSVEPLL	9	Unmodified	_HAFSVEPLL_					0	0	0		ENST00000593832.1_1_19:17691448-17692250:+|nuORF;ENSG00000130309|ENST00000252599|COLGALT1	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.77703857421875	2	506.776742	1011.53893	0.42257	0.00021415	-0.28435	-0.0001441	0.13822	7.0048E-05	506.7764679480643	63.643	0.69584	63.643	63.441	64.137	0					39	24	3	0	0	0	0.18364	2	14526	14462;14526		20.454	6.245	1	187350			6211	2465	4177	4208	8504;8505	8505					0.03362357931564475
HAFSVEPLL	9	Unmodified	_HAFSVEPLL_					0	0	0		ENST00000593832.1_1_19:17691448-17692250:+|nuORF;ENSG00000130309|ENST00000252599|COLGALT1	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7768249511719	2	506.776742	1011.53893	0.38002	0.00019259	-0.22277	-0.00011289	0.15725	7.9691E-05	506.77644142430415	63.603	0.72889	63.674	63.414	64.143	0.071018					45	24	3	0	0	0	0.18364	2	14276	14276;14328		20.454	7.9221	1	205760			6212	2465	4177	4208	8506;8507	8506					0.03362357931564475
HAFVELHEF	9	Unmodified	_HAFVELHEF_					0	0	0		nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF	nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7772827148438	2	564.777274	1127.53999	0.1543	8.7143E-05	0.058437	3.3004E-05	0.21273	0.00012015	564.7772539456741	50.324	0.52155	50.324	50.129	50.651	0					46	18	3	0	0	0	0.01209	1	10410	10410		74.423	51.686	1	255080			6213	1603	4178	4209	8508	8508					-0.01867427699539803
HAFVELHEF	9	Unmodified	_HAFVELHEF_					0	0	0		nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF	nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7771606445312	2	564.777274	1127.53999	0.27128	0.00015321	0.32072	0.00018114	0.592	0.00033435	564.7773987239406	50.243	0.78898	50.316	50.097	50.886	0.07312					49	27	3	0	0	0	0.0071888	1	10243	10243		85.272	62.536	1	258840			6214	1603	4178	4209	8509	8509					-0.01867427699539803
HAFVQDTTL	9	Unmodified	_HAFVQDTTL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2612915039062	2	516.261456	1030.50836	-0.12936	-6.6782E-05	1.3638	0.00070407	1.2344	0.00063729	516.2623669508109	44.753	1.0576	44.753	44.243	45.301	0					45	37	2	0	0	0	0.20358	1	8743	8743		18.146	5.1039	1	71354			6215	2838	4179	4210	8510	8510					-0.005674204534898308
HAFYEFTF	8	Unmodified	_HAFYEFTF_					0	0	0		ENSG00000131023|ENST00000543571|LATS1;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000150457|ENST00000382592|LATS2	ENSG00000131023|ENST00000543571|LATS1;ENSG00000150457|ENST00000382592|LATS2	ENSG00000131023|ENST00000543571|LATS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2978515625	2	531.239993	1060.46543	0.60643	0.00032216	-0.43232	-0.00022966	0.17412	9.2498E-05	531.239641123844	70.404	0.22034	70.464	70.257	70.477	0.060562					9	7	2	0	0	0	0.3576	1	16365	16365		8.5933	0	1	62048			6216	2510;3428	4180	4211	8511	8511					-0.06238190510930508
HAGRFYKLYY	10	Unmodified	_HAGRFYKLYY_					0	0	0			REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant	REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.89605712890625	3	439.89614	1316.66659	0.18675	8.2151E-05	-0.80724	-0.0003551	-0.62049	-0.00027295	439.8958876087831	34.565	0.96525	34.565	34.294	35.259	0					50	36	2	0	0	0	0.47161	1	5682	5682		0.69767	0.07084	1	38506	+		6217	13337	4181	4212	8512	8512					0.020924985256215223
HAGRFYKLYY	10	Unmodified	_HAGRFYKLYY_					0	0	0			REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant	REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.89581298828125	3	439.89614	1316.66659	-0.050664	-2.2287E-05	-0.5319	-0.00023398	-0.58257	-0.00025627	439.8959476925972	34.41	0.82243	34.486	34.277	35.1	0.076248					70	35	3	0	0	0	0.46521	2	5477	5477;5532		1.9064	0.28716	1	42256	+		6218	13337	4181	4212	8513;8514	8513					0.020924985256215223
HAGRFYKLYY	10	Unmodified	_HAGRFYKLYY_					0	0	0			REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant	REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	439.89614	1316.66659	0.18675	8.2151E-05	-0.80724	-0.0003551	-0.62049	-0.00027295	439.8958876087831	34.565	0.96525	34.565	34.294	35.259	0	0.039192	-0.00021236	NaN	1.9064	50	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38506	+		6219	13337	4181	4212							0.020924985256215223
HAGRFYKLYY	10	Unmodified	_HAGRFYKLYY_					0	0	0			REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant	REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	439.89614	1316.66659	-0.050664	-2.2287E-05	-0.5319	-0.00023398	-0.58257	-0.00025627	439.8959476925972	34.41	0.82243	34.486	34.277	35.1	0.076248	-0.039192	0.000151	NaN	1.9064	70	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42256	+		6220	13337	4181	4212							0.020924985256215223
HAGSELLQR	9	Unmodified	_HAGSELLQR_					0	0	0		nc|ENSG00000127191|Q12933-4|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2	nc|ENSG00000127191|Q12933-4|TRAF2	nc|ENSG00000127191|Q12933-4|TRAF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7723388671875	2	505.772522	1009.53049	-0.36739	-0.00018581	-0.15071	-7.6223E-05	-0.51809	-0.00026204	505.77277892641456	21.558	2.4409	21.558	21.341	23.782	0					622	225	5	0	0	0	0.0045547	6	1957	1848;1957;1990;2026;2061;2179		88.904	14.821	1	5524900			6221	2358	4182	4213	8515;8516;8517;8518;8519;8520	8516					0.026108040149665612
HAGSELLQR	9	Unmodified	_HAGSELLQR_					0	0	0		nc|ENSG00000127191|Q12933-4|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2	nc|ENSG00000127191|Q12933-4|TRAF2	nc|ENSG00000127191|Q12933-4|TRAF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.772216796875	2	505.772522	1009.53049	0.0088497	4.4759E-06	-0.4641	-0.00023473	-0.45525	-0.00023025	505.77265403156616	21.373	2.3248	21.474	21.254	23.579	0.10178					564	229	5	0	0	0	0.0064512	3	1704	1704;1805;1837		78.149	13.913	1	5928000			6222	2358	4182	4213	8521;8522;8523	8521					0.026108040149665612
HAHCLPFLL	9	Unmodified	_HAHCLPFLL_					0	0	0		ENSG00000156574|ENST00000287139|NODAL	ENSG00000156574|ENST00000287139|NODAL	ENSG00000156574|ENST00000287139|NODAL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7974853515625	2	525.781305	1049.54806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.787	1	97.787	97.287	98.287	0								0	0	0	0.24995	1	24873	24873		9.3474	0.75416	1				6223	3628	4183	4214	8524	8524					0.025264280162446084
HAHLDIEAF	9	Unmodified	_HAHLDIEAF_					0	0	0		ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENSG00000130707|ENST00000352480|ASS1	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7618408203125	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.901	1	47.901	47.401	48.401	0								0	0	0	1.8843E-08	1	9678	9678		112.59	78.191	1				6224	2485	4184	4215	8525	8525					-0.015000007336311683
HAHLDIEAF	9	Unmodified	_HAHLDIEAF_					0	0	0		ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENSG00000130707|ENST00000352480|ASS1	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.76171875	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.064	1	48.064	47.564	48.564	0								0	0	0	0.058966	1	9727	9727		46.021	23.285	1				6225	2485	4184	4215	8526	8526					-0.015000007336311683
HAHLDIEAF	9	Unmodified	_HAHLDIEAF_					0	0	0		ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENSG00000130707|ENST00000352480|ASS1	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7616577148438	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.458	1	48.458	47.958	48.958	0								0	0	0	0.21527	1	9845	9845		15.847	2.3393	1				6226	2485	4184	4215	8527	8527					-0.015000007336311683
HAHLDIEAF	9	Unmodified	_HAHLDIEAF_					0	0	0		ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENSG00000130707|ENST00000352480|ASS1	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.76171875	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.78	1	47.86	47.36	48.36	0.080029								0	0	0	2.9699E-05	1	9510	9510		100.37	72.743	1				6227	2485	4184	4215	8528	8528					-0.015000007336311683
HAHLDIEAF	9	Unmodified	_HAHLDIEAF_					0	0	0		ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENSG00000130707|ENST00000352480|ASS1	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.76171875	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.978	1	48.058	47.558	48.558	0.080029								0	0	0	0.071558	1	9570	9570		42.095	20.558	1				6228	2485	4184	4215	8529	8529					-0.015000007336311683
HAHLDIEAF	9	Unmodified	_HAHLDIEAF_					0	0	0		ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENSG00000130707|ENST00000352480|ASS1	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENST00000372386.6_1_9:133355254-133376405:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7613525390625	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.369	1	48.449	47.949	48.949	0.080029								0	0	0	0.21527	1	9688	9688		15.847	6.4641	1				6229	2485	4184	4215	8530	8530					-0.015000007336311683
HAHPSALLSI	10	Unmodified	_HAHPSALLSI_					0	0	0			REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.759033203125	2	523.293091	1044.57163	-0.13706	-7.1725E-05	-0.32572	-0.00017045	-0.46278	-0.00024217	523.2927466125155	30.395	0.38875	30.395	30.221	30.61	0					29	21	2	0	0	0	0.31834	1	4432	4432		1.6526	0	1	18353	+		6230	10563	4185	4216	8531	8531					0.05112565054423612
HAIASAVPQT	10	Unmodified	_HAIASAVPQT_					0	0	0			REV__ENST00000568636.5_1_16:718678-720341:+|nuORF	REV__ENST00000568636.5_1_16:718678-720341:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.76910400390625	2	497.769448	993.524344	0.042784	2.1297E-05	-0.42964	-0.00021386	-0.38685	-0.00019256	497.76924965000273	39.755	0.57502	39.755	39.496	40.071	0					38	19	3	0	0	0	0.45443	1	7275	7275		3.9444	0	1	121020	+		6231	12514	4186	4217	8532	8532					0.027322857834292336
HAIEDKETI	9	Unmodified	_HAIEDKETI_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;ENST00000590485.1_1_19:5641888-5648065:+|nuORF;ENST00000586934.5_1_19:5623180-5651054:+|nuORF	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.271728515625	2	528.272021	1054.52949	-0.086789	-4.5848E-05	0.3586	0.00018944	0.27181	0.00014359	528.2718029343391	25.821	0.29946	25.913	25.744	26.043	0.091507					42	24	2	0	0	0	0.11816	1	2945	2945		28.495	14.588	1	30882			6232	3766	4187	4218	8533	8533					0.0044054485538254085
HAIEESVVL	9	Unmodified	_HAIEESVVL_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.77178955078125	2	498.771657	995.528761	0.24134	0.00012037	0.12409	6.1893E-05	0.36543	0.00018227	498.7716423636768	48.84	0.87828	48.84	48.544	49.422	0					91	30	5	0	0	0	0.18364	2	9981	9931;9981		20.454	4.3045	1	1293900			6233	3338	4188	4219	8534;8535	8535					0.030817502063428037
HAIEESVVL	9	Unmodified	_HAIEESVVL_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.77178955078125	2	498.771657	995.528761	0.17911	8.9334E-05	0.1075	5.3616E-05	0.2866	0.00014295	498.7716773799375	48.74	0.77061	48.816	48.567	49.338	0.076607					81	26	5	0	0	0	0.17247	1	9815	9815		21.747	4.6338	1	1064200			6234	3338	4188	4219	8536	8536					0.030817502063428037
HAIETEEGL	9	Unmodified	_HAIETEEGL_					0	0	0		nc|ENSG00000077684|Q6IE81-3|JADE1;ENSG00000102221|ENST00000614628|JADE3;nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7435607910156	2	499.743096	997.47164	0.15472	7.7319E-05	-0.31251	-0.00015618	-0.1578	-7.8858E-05	499.7433284087407	35.517	0.76423	35.517	35.205	35.969	0					56	28	3	0	0	0	0.074645	1	5979	5979		37.974	16.227	1	131190			6235	866	4189	4220	8537	8537					-0.027197170700446804
HAIETEEGL	9	Unmodified	_HAIETEEGL_					0	0	0		nc|ENSG00000077684|Q6IE81-3|JADE1;ENSG00000102221|ENST00000614628|JADE3;nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7428894042969	2	499.743096	997.47164	0.17994	8.9926E-05	-0.44794	-0.00022385	-0.26799	-0.00013393	499.7434051955381	35.46	0.76392	35.538	35.226	35.99	0.078827					54	29	3	0	0	0	0.10833	1	5838	5838		30.637	14.789	1	86191			6236	866	4189	4220	8538	8538					-0.027197170700446804
HALDYADEL	9	Unmodified	_HALDYADEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7434692382812	2	523.743096	1045.47164	0.1578	8.2645E-05	-0.10765	-5.638E-05	0.050148	2.6265E-05	523.74304229157	50.925	0.55745	50.925	50.651	51.208	0					38	18	4	0	0	0	0.10833	1	10580	10580		30.637	10.183	1	153360			6237	3517	4190	4221	8539	8539					-0.04927717070063409
HALPESESL	9	Unmodified	_HALPESESL_					0	0	0		nc|ENSG00000165509|Q8TD91-2|MAGEC3;ENSG00000165509|ENST00000298296|MAGEC3	nc|ENSG00000165509|Q8TD91-2|MAGEC3	nc|ENSG00000165509|Q8TD91-2|MAGEC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7454528808594	2	491.745639	981.476725	-0.19801	-9.7372E-05	0.052587	2.586E-05	-0.14542	-7.1512E-05	491.7456617545611	42.616	0.60773	42.706	42.431	43.039	0.089764					49	22	3	0	0	0	0.25979	1	8019	8019		11.64	3.7301	1	430950			6238	4088	4191	4222	8540	8540					-0.014754132074131121
HALSLKIVL	9	Unmodified	_HALSLKIVL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.3268127441406	2	497.326402	992.638252	0.28697	0.00014272	0.18587	9.244E-05	0.47284	0.00023516	497.32642374280465	56.66	0.89585	56.66	56.458	57.354	0					64	32	3	0	0	0	0.0034419	3	12326	12326;12370;12420		106.94	59.191	1	420650			6239	1808	4192	4223	8541;8542;8543	8541					0.14163800616313438
HALSLKIVL	9	Unmodified	_HALSLKIVL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.3268127441406	2	497.326402	992.638252	0.34102	0.0001696	0.14626	7.274E-05	0.48728	0.00024234	497.3263765273374	56.558	0.82915	56.624	56.434	57.263	0.066452					52	29	3	0	0	0	0.0043591	3	12160	12160;12206;12257		96.367	48.618	1	328910			6240	1808	4192	4223	8544;8545;8546	8544					0.14163800616313438
HANDREVVL	9	Unmodified	_HANDREVVL_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7777099609375	2	526.777805	1051.54106	-0.19679	-0.00010366	0.0012137	6.3933E-07	-0.19557	-0.00010302	526.7777783043016	26.412	0.64907	26.412	26.224	26.873	0					108	48	3	0	0	0	0.30757	1	3228	3228		5.7319	0	1	73010	+		6241	8873	4193	4224	8547	8547					0.017347866693853575
HANKDCLAAEL	11	Unmodified	_HANKDCLAAEL_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8010864257812	2	592.790055	1183.56556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.938	1	61.938	61.438	62.438	0								0	0	0	0.31333	1	13950	13950		10.151	0.076642	1		+		6242	10721	4194	4225	8548	8548					-0.018883212394257498
HAPYYGNP	8	Unmodified	_HAPYYGNP_					0	0	0			REV__nc|ENSG00000141837|O00555-6|CACNA1A	REV__nc|ENSG00000141837|O00555-6|CACNA1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7104187011719	2	459.70886	917.403166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.512	1	99.512	99.012	100.01	0								0	0	0	0.38822	1	25396	25396		2.8892	0.31174	1		+		6243	9415	4195	4226	8549	8549					-0.05883916859238525
HARIQGLN	8	Unmodified	_HARIQGLN_					0	0	0			REV__ENSG00000188305|ENST00000342063|PEAK3	REV__ENSG00000188305|ENST00000342063|PEAK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.21282958984375	2	454.756675	907.498798	-0.16784	-7.6324E-05	-0.34358	-0.00015625	-0.51142	-0.00023257	454.7564517854473	21.462	0.38561	21.462	21.333	21.718	0					53	37	2	0	0	0	0.3576	1	1842	1842		2.3027	0	1	39964	+		6244	10763	4196	4227	8550	8550					0.04134856051643965
HARIQGLN	8	Unmodified	_HARIQGLN_					0	0	0			REV__ENSG00000188305|ENST00000342063|PEAK3	REV__ENSG00000188305|ENST00000342063|PEAK3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	454.756675	907.498798	-0.021475	-9.7658E-06	-0.25586	-0.00011635	-0.27734	-0.00012612	454.7564736157071	21.269	0.3288	21.369	21.251	21.58	0.099499	-0.046654	3.6399E-05	NaN	2.3027	55	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34640	+		6245	10763	4196	4227							0.04134856051643965
HASDRIIAL	9	Unmodified	_HASDRIIAL_					0	0	0		ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT	ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENST00000469678.1_1_3:53259917-53265542:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.76910400390625	2	498.285266	994.555979	-0.024893	-1.2404E-05	0.1079	5.3764E-05	0.083005	4.136E-05	498.2852188093987	39.9	0.45997	39.9	39.748	40.208	0					27	15	2	0	0	0	0.2418	1	7275	7275		13.906	3.0821	1	54919			6246	3959	4197	4228	8551	8551					0.058482785373598745
HASDRIIAL	9	Unmodified	_HASDRIIAL_					0	0	0		ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT	ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENST00000469678.1_1_3:53259917-53265542:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2850341796875	2	498.285266	994.555979	0.093325	4.6502E-05	-0.17489	-8.7145E-05	-0.081566	-4.0643E-05	498.285027364048	39.788	0.40831	39.877	39.728	40.137	0.088566					25	15	2	0	0	0	0.24683	1	7113	7113		11.495	4.2055	1	40656			6247	3959	4197	4228	8552	8552					0.058482785373598745
HASDVLENAF	10	Unmodified	_HASDVLENAF_					0	0	0		ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7619018554688	2	551.76182	1101.50909	0.30534	0.00016848	0.29022	0.00016013	0.59556	0.00032861	551.7617009366012	53.021	0.56992	53.021	52.841	53.41	0					47	22	3	0	0	0	0.14333	1	11244	11244		40.239	20.982	1	217850			6248	1798	4198	4229	8553	8553					-0.03760625804443407
HASDVLENAF	10	Unmodified	_HASDVLENAF_					0	0	0		ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.762451171875	2	551.76182	1101.50909	0.5222	0.00028813	0.26594	0.00014674	0.78815	0.00043487	551.7615875187016	52.991	0.47692	53.056	52.851	53.328	0.065426					44	21	3	0	0	0	0.38376	1	11120	11120		13.615	6.8917	1	163210			6249	1798	4198	4229	8554	8554					-0.03760625804443407
HASFELWQL	9	Unmodified	_HASFELWQL_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8038940429688	2	565.785099	1129.55564	0.0027776	1.5715E-06	1.0326	0.00058421	1.0353	0.00058578	566.2872860895139	73.38	0.59625	73.38	73.202	73.798	0					39	21	2	0	0	0	0.091044	1	17454	17454		34.402	5.9149	1	348800			6250	675	4199	4230	8555	8555					-0.0039514118248007435
HASFELWQL	9	Unmodified	_HASFELWQL_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8041381835938	2	565.785099	1129.55564	0.19383	0.00010966	0.86007	0.00048661	1.0539	0.00059628	565.785470986269	73.303	0.6994	73.356	73.152	73.852	0.052574					60	27	3	0	0	0	0.15282	1	17287	17287		24.021	5.8742	1	197330			6251	675	4199	4230	8556	8556					-0.0039514118248007435
HASGLLQR	8	Unmodified	_HASGLLQR_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2513122558594	2	441.251226	880.487899	-0.14075	-6.2107E-05	0.58367	0.00025755	0.44292	0.00019544	441.25141915690534	21.56	0.75487	21.56	21.402	22.157	0					138	71	3	0	0	0	0.25696	1	1899	1899		37.974	3.5723	1	119890	+		6252	9944	4200	4231	8557	8557					0.04287453677375197
HASGLLQR	8	Unmodified	_HASGLLQR_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	441.251226	880.487899	-0.14075	-6.2107E-05	0.58367	0.00025755	0.44292	0.00019544	441.25141915690534	21.56	0.75487	21.56	21.402	22.157	0	0.040331	2.0263E-05	NaN	37.974	138	71	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119890	+		6253	9944	4200	4231							0.04287453677375197
HASGLLQR	8	Unmodified	_HASGLLQR_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	441.251226	880.487899	-0.052947	-2.3363E-05	0.51602	0.00022769	0.46307	0.00020433	441.25134888237005	21.377	0.49124	21.479	21.327	21.819	0.10178	-0.040331	-3.9442E-05	NaN	37.974	102	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111780	+		6254	9944	4200	4231							0.04287453677375197
HASIDEPLL	9	Unmodified	_HASIDEPLL_					0	0	0			REV__ENST00000317613.10_1_9:116304083-116304269:+|nuORF	REV__ENST00000317613.10_1_9:116304083-116304269:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.76318359375	2	497.763832	993.513111	-0.50358	-0.00025067	-0.91034	-0.00045313	-1.4139	-0.0007038	497.76341164977515	41.684	0.47866	41.684	41.459	41.938	0					54	17	4	0	0	0	0.22344	1	7789	7789		15.847	0	1	297130	+		6255	11386	4201	4232	8558	8558					0.01609463689283075
HASLSEYVL	9	Unmodified	_HASLSEYVL_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;nc|ENSG00000147955|Q99720-5|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.763916015625	2	509.763832	1017.51311	0.59555	0.00030359	0.17418	8.8793E-05	0.76973	0.00039238	509.763839445199	54.348	0.98724	54.348	54.098	55.085	0					72	41	3	0	0	0	0.22344	1	11597	11597		15.847	4.2069	1	821570			6256	3348	4202	4233	8559	8559					0.0050546368928507945
HASLSEYVL	9	Unmodified	_HASLSEYVL_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;nc|ENSG00000147955|Q99720-5|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7643127441406	2	509.763832	1017.51311	0.54763	0.00027916	0.39565	0.00020169	0.94328	0.00048085	509.7639544388981	54.283	0.93623	54.348	54.117	55.053	0.065128					90	44	3	0	0	0	0.22344	1	11502	11502		15.847	1.9411	1	627800			6257	3348	4202	4233	8560	8560					0.0050546368928507945
HATESEHSL	9	Unmodified	_HATESEHSL_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.73028564453125	2	505.73052	1009.44649	-0.44877	-0.00022696	0.016142	8.1636E-06	-0.43263	-0.00021879	505.73049366871953	17.986	1.0092	17.986	17.806	18.815	0					259	118	4	0	0	0	2.3187E-06	4	1031	1009;1031;1058;1081		156.16	105.3	1	576260			6258	2908	4203	4234	8561;8562;8563;8564	8562					-0.05785771872615442
HATRGPDVSL	10	Unmodified	_HATRGPDVSL_					0	0	0		nc|ENSG00000214357|A8MQ27-2|NEURL1B;ENSG00000214357|ENST00000369800|NEURL1B	nc|ENSG00000214357|A8MQ27-2|NEURL1B	nc|ENSG00000214357|A8MQ27-2|NEURL1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7777709960938	2	526.777805	1051.54106	-0.15789	-8.3172E-05	0.02442	1.2864E-05	-0.13347	-7.0309E-05	526.777818717486	26.256	0.71118	26.348	26.103	26.814	0.091507					117	59	3	0	0	0	0.40359	1	3110	3110		11.495	2.1116	1	64644			6259	5567	4204	4235	8565	8565					0.017347866693853575
HATVATENEVF	11	Unmodified	_HATVATENEVF_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.2935180664062	2	609.293485	1216.57242	-0.19774	-0.00012048	0.097817	5.9599E-05	-0.099922	-6.0882E-05	609.2935303964614	42.814	1.5711	42.814	42.545	44.116	0					135	55	3	0	0	0	0.0058552	3	8160	8117;8160;8204		87.123	59.495	1	1895500			6260	3920	4205	4236	8566;8567;8568	8567					-0.02720685087183483
HATVATENEVF	11	Unmodified	_HATVATENEVF_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.2935791015625	2	609.293485	1216.57242	0.016021	9.7618E-06	0.065166	3.9705E-05	0.081187	4.9467E-05	609.2935025327996	42.717	1.1424	42.807	42.571	43.714	0.089764					104	42	3	0	0	0	0.014846	3	8006	7960;8006;8054		70.496	48.959	1	1656700			6261	3920	4205	4236	8569;8570;8571	8570					-0.02720685087183483
HAVDGDSKL	9	Unmodified	_HAVDGDSKL_					0	0	0		ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.23779296875	2	471.237981	940.461409	-0.49422	-0.0002329	0.030514	1.4379E-05	-0.46371	-0.00021852	471.23794110002433	20.316	0.4932	20.316	20.161	20.654	0					104	49	3	0	0	0	0.14444	1	1568	1568		24.991	15.608	1	84651			6262	48	4206	4237	8572	8572					-0.01120280004624874
HAVDGDSKL	9	Unmodified	_HAVDGDSKL_					0	0	0		ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.23785400390625	2	471.237981	940.461409	-0.15908	-7.4963E-05	-0.20427	-9.626E-05	-0.36335	-0.00017122	471.2378237680369	20.207	0.33957	20.302	20.156	20.495	0.095232					79	35	3	0	0	0	0.19307	1	1449	1449		19.362	13.63	1	85998			6263	48	4206	4237	8573	8573					-0.01120280004624874
HAVGIVVNK	9	Unmodified	_HAVGIVVNK_					0	0	0		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.328369140625	2	468.784902	935.55525	-0.28576	-0.00013396	-0.20688	-9.6983E-05	-0.49264	-0.00023094	468.7846997766929	26.156	0.4491	26.156	25.981	26.43	0					70	37	3	0	0	0	0.23598	1	3181	3181		15.847	7.2539	1	45373			6264	2171	4207	4238	8574	8574					0.08489483888320137
HAVGIVVNK	9	Unmodified	_HAVGIVVNK_					0	0	0		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32818603515625	2	468.784902	935.55525	-0.31039	-0.00014551	-0.27439	-0.00012863	-0.58478	-0.00027414	468.78471278880323	26.028	0.34871	26.12	25.971	26.32	0.091507					55	30	2	0	0	0	0.20845	1	3012	3012		21.747	8.2388	1	46384			6265	2171	4207	4238	8575	8575					0.08489483888320137
HAVIQEYML	9	Oxidation (M)	_HAVIQEYM(Oxidation (M))L_		HAVIQEYM(1)L		HAVIQEYM(46)L	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2879028320312	2	560.278792	1118.54303	0.26289	0.00014729	-0.33088	-0.00018538	-0.067992	-3.8094E-05	560.2786076972455	50.131	0.67085	50.131	49.733	50.404	0					61	23	3	0	0	0	0.03918	1	10418	10418		45.7	15.475	1	753430			6266	709	4208	4239	8576	8576		38			-0.011499206370444881
HAVIQEYML	9	Oxidation (M)	_HAVIQEYM(Oxidation (M))L_		HAVIQEYM(1)L		HAVIQEYM(82)L	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2787475585938	2	560.278792	1118.54303	0.23728	0.00013294	-0.19748	-0.00011065	0.039795	2.2297E-05	560.2786454855449	51.252	2.6533	51.252	50.46	53.113	0					232	92	4	0	0	0	0.0052407	3	10634	10634;10688;10732		81.89	49.585	1	1032600			6267	709	4208	4239	8577;8578;8579	8577		38			-0.011499206370444881
HAVIQEYML	9	Oxidation (M)	_HAVIQEYM(Oxidation (M))L_		HAVIQEYM(1)L		HAVIQEYM(63)L	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2788696289062	2	560.278792	1118.54303	0.38522	0.00021583	-0.49841	-0.00027925	-0.11319	-6.3418E-05	560.2785029418678	50.086	0.89954	50.159	49.842	50.741	0.07312					73	31	4	0	0	0	0.013982	1	10229	10229		62.573	38.552	1	608280			6268	709	4208	4239	8580	8580		38			-0.011499206370444881
HAVIQEYML	9	Oxidation (M)	_HAVIQEYM(Oxidation (M))L_		HAVIQEYM(1)L		HAVIQEYM(72)L	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2788696289062	2	560.278792	1118.54303	0.40209	0.00022528	-0.21943	-0.00012294	0.18267	0.00010234	560.2786094266504	51.149	1.7727	51.219	50.548	52.32	0.069874					176	66	4	0	0	0	0.0084662	4	10523	10475;10523;10569;10607		71.922	52.665	1	829640			6269	709	4208	4239	8581;8582;8583;8584	8582		38			-0.011499206370444881
HAVPDELVL	9	Unmodified	_HAVPDELVL_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7744445800781	2	496.7742	991.533846	0.28007	0.00013913	0.18633	9.2566E-05	0.46641	0.0002317	496.7741792510976	56.348	0.67	56.415	56.183	56.853	0.066452					48	24	3	0	0	0	0.25979	1	12122	12122		11.64	2.2929	1	425150			6270	6877	4209	4240	8585	8585					0.037740540689469526
HAVQNRLL	8	Unmodified	_HAVQNRLL_					0	0	0			REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1984558105469	2	475.780151	949.545748	-0.42923	-0.00020422	-0.11079	-5.271E-05	-0.54002	-0.00025693	475.78014452100376	26.723	0.26511	26.723	26.644	26.909	0					21	16	2	0	0	0	0.3576	1	3379	3379		0.79363	0	1	14796	+		6271	9076	4210	4241	8586	8586					0.06895715602797736
HAVQNRLL	8	Unmodified	_HAVQNRLL_					0	0	0			REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	475.780151	949.545748	-0.3732	-0.00017756	-0.28744	-0.00013676	-0.66065	-0.00031432	475.7800747980723	26.611	0.21875	26.697	26.591	26.809	0.0867	-0.012594	-0.00011798	NaN	0.79363	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12416	+		6272	9076	4210	4241							0.06895715602797736
HAVQTVETM	9	Oxidation (M)	_HAVQTVETM(Oxidation (M))_		HAVQTVETM(1)		HAVQTVETM(40)	0	0	1		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2449951171875	2	516.244949	1030.47534	-0.18999	-9.8079E-05	0.32011	0.00016525	0.13012	6.7174E-05	516.24511059194	23.12	0.75721	23.12	22.934	23.691	0					120	73	2	0	0	0	0.064247	1	2319	2319		40.239	14.84	1	154980			6273	3487	4211	4242	8587	8587		222			-0.0386737056783204
HAVQTVETM	9	Oxidation (M)	_HAVQTVETM(Oxidation (M))_		HAVQTVETM(1)		HAVQTVETM(50)	0	0	1		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2451782226562	2	516.244949	1030.47534	0.056645	2.9243E-05	0.15052	7.7703E-05	0.20716	0.00010695	516.2450018218907	22.889	0.53461	22.991	22.845	23.38	0.10178					93	49	2	0	0	0	0.032194	2	2167	2132;2167		49.554	24.155	1	154830			6274	3487	4211	4242	8588;8589	8589		222			-0.0386737056783204
HAVQTVETM	9	Oxidation (M)	_HAVQTVETM(Oxidation (M))_		HAVQTVETM(1)		HAVQTVETM(46)	0	0	1		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2453002929688	2	516.244949	1030.47534	0.0010883	5.6184E-07	0.5557	0.00028688	0.55679	0.00028744	516.2452299784801	24.672	0.80272	24.768	24.48	25.283	0.096075					123	70	2	0	0	0	0.03918	1	2591	2591		45.7	25.246	1	78412			6275	3487	4211	4242	8590	8590		222			-0.0386737056783204
HAVQTVETM	9	Unmodified	_HAVQTVETM_					0	0	0		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.247802734375	2	508.247492	1014.48043	-0.16193	-8.2301E-05	0.18938	9.625E-05	0.027445	1.3949E-05	508.2476115689336	31.78	0.45927	31.78	31.622	32.082	0					41	18	3	0	0	0	0.16392	1	4822	4822		22.736	3.4793	1	80723			6276	3487	4211	4243	8591	8591					-0.026230667052118406
HAVRDTEL	8	Unmodified	_HAVRDTEL_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7454833984375	2	470.745973	939.477394	-0.43463	-0.0002046	-0.47451	-0.00022337	-0.90914	-0.00042798	470.74575919298945	22.366	0.48029	22.366	22.235	22.715	0					63	36	3	0	0	0	0.53202	1	2105	2105		6.7232	0	1	40668			6277	505	4212	4244	8592	8592					0.005234262322687755
HAVRDTEL	8	Unmodified	_HAVRDTEL_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.74578857421875	2	470.745973	939.477394	-0.21611	-0.00010173	-0.49586	-0.00023342	-0.71196	-0.00033515	470.74576094220345	22.164	0.43535	22.266	22.157	22.592	0.10178					64	35	3	0	0	0	0.53202	1	1958	1958		6.7232	0	1	40154			6278	505	4212	4244	8593	8593					0.005234262322687755
HAVSDPSIL	9	Unmodified	_HAVSDPSIL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7505187988281	2	469.750724	937.486896	-0.34188	-0.0001606	-0.13156	-6.1801E-05	-0.47344	-0.0002224	469.7506385899892	43.078	0.71568	43.078	42.829	43.544	0					52	24	3	0	0	0	0.17247	1	8223	8223		21.747	0	1	286210			6279	2643	4213	4245	8594	8594					0.01565194517809232
HAVSDPSIL	9	Unmodified	_HAVSDPSIL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	469.750724	937.486896	-0.35493	-0.00016673	-0.017025	-7.9976E-06	-0.37195	-0.00017472	469.75065428414524	43.006	0.53518	43.095	42.86	43.395	0.089764	0.0087307	6.5152E-05	NaN	21.747	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191150			6280	2643	4213	4245							0.01565194517809232
HAVSYGTVAL	10	Unmodified	_HAVSYGTVAL_					0	0	0			REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF	REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2713623046875	2	509.271824	1016.5291	-0.1703	-8.6731E-05	-0.89305	-0.00045481	-1.0634	-0.00054154	509.27119773670546	29.089	0.76311	29.089	28.915	29.678	0					83	43	2	0	0	0	0.3198	1	4026	4026		20.454	1.1966	1	141060	+		6281	11827	4214	4246	8595	8595					0.021491699262014663
HAYDGKDYI	9	Unmodified	_HAYDGKDYI_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7529296875	2	541.251089	1080.48762	-0.071673	-3.8793E-05	-0.096636	-5.2304E-05	-0.16831	-9.1098E-05	541.2510866006126	32.364	0.55795	32.364	32.16	32.718	0					43	25	3	0	0	0	0.24767	1	4990	4990		13.042	6.3193	1	47736			6282	5489	4215	4247	8596	8596					-0.04940010833138331
HAYDGKDYI	9	Unmodified	_HAYDGKDYI_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.251220703125	2	541.251089	1080.48762	0.053201	2.8795E-05	-0.21139	-0.00011441	-0.15819	-8.5619E-05	541.2509723938074	32.306	0.49406	32.38	32.198	32.692	0.07378					48	26	3	0	0	0	0.1646	1	4848	4848		22.658	4.5117	1	80826			6283	5489	4215	4247	8597	8597					-0.04940010833138331
HAYDGKDYISL	11	Unmodified	_HAYDGKDYISL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3084106445312	2	641.309135	1280.60372	0.028366	1.8191E-05	0.030386	1.9487E-05	0.058752	3.7678E-05	641.8106993093943	46.43	0.3084	46.43	46.207	46.516	0					19	10	3	0	0	0	0.29396	1	9204	9204		18.721	13.824	1	229550			6284	5489	4216	4248	8598	8598					-0.025361120530988046
HAYDGKDYISL	11	Unmodified	_HAYDGKDYISL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3088989257812	2	641.309135	1280.60372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.477	1	46.477	45.977	46.977	0								0	0	0	0.30945	1	9250	9250		11.518	9.2151	1				6285	5489	4216	4248	8599	8599					-0.025361120530988046
HAYDGKDYISL	11	Unmodified	_HAYDGKDYISL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3106079101562	2	641.309135	1280.60372	0.014639	9.3883E-06	-0.080139	-5.1394E-05	-0.065499	-4.2005E-05	641.3089254839246	46.31	0.35846	46.396	46.159	46.518	0.085621					18	12	3	0	0	0	0.26714	2	9077	9064;9077		21.799	14.698	1	124080			6286	5489	4216	4248	8600;8601	8601					-0.025361120530988046
HAYTTSDGQPF	11	Unmodified	_HAYTTSDGQPF_					0	0	0			REV__nc|ENSG00000185774|Q6PIL6-3|KCNIP4	REV__nc|ENSG00000185774|Q6PIL6-3|KCNIP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.5148010253906	3	408.515765	1222.52547	0.1693	6.9162E-05	-1.939	-0.0007921	-1.7697	-0.00072294	408.8492734092818	76.136	0.58109	76.175	76.027	76.608	0.03923					32	27	2	0	0	0	0.39569	1	18159	18159		2.4348	0	1	1710000	+		6287	10681	4217	4249	8602	8602					-0.07689544638333246
HCDLAFWR	8	Unmodified	_HCDLAFWR_					0	0	0			REV__ENST00000470962.1_1_17:29281459-29284884:+|nuORF	REV__ENST00000470962.1_1_17:29281459-29284884:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7252197265625	2	524.245086	1046.47562	-0.19114	-0.0001002	0.2848	0.00014931	0.093664	4.9103E-05	524.7461681712604	26.797	0.087923	26.797	26.724	26.812	0					9	6	2	0	0	0	0.3576	1	3362	3362		0.69038	0	1	13513	+		6288	10621	4218	4250	8603	8603					-0.045759060573118404
HCFDLIFAF	9	Unmodified	_HCFDLIFAF_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7521362304688	2	556.76532	1111.51609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.754	1	69.814	69.314	70.314	0.060562								0	0	0	0.23452	1	16179	16179		12.532	3.1484	1				6289	1094	4219	4251	8604	8604					-0.035209844575774696
HCFWLTQEF	9	Unmodified	_HCFWLTQEF_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1830749511719	3	404.183181	1209.52771	0.18031	7.2877E-05	-0.14452	-5.8413E-05	0.035785	1.4464E-05	404.18312532497936	48.224	0.90928	48.305	47.813	48.722	0.080029					54	31	3	0	0	0	0.32375	1	9707	9707		2.086	0.63089	1	94860			6290	1912	4220	4252	8605	8605					-0.06866787434228172
HCFWLTQEF	9	Unmodified	_HCFWLTQEF_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	404.183181	1209.52771	0.4507	0.00018216	-0.48883	-0.00019758	-0.038128	-1.5411E-05	404.1829543893574	48.334	0.80319	48.334	47.941	48.744	0	0.014805	-0.00026683	NaN	2.086	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74253			6291	1912	4220	4252							-0.06866787434228172
HCLLLQLHL	9	Unmodified	_HCLLLQLHL_					0	0	0			REV__ENST00000262053.7_1_12:51207915-51208137:+|nuORF	REV__ENST00000262053.7_1_12:51207915-51208137:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7616577148438	2	545.315512	1088.61647	0.25691	0.00014009	1.3304	0.00072548	1.5873	0.00086557	545.3170571607263	89.184	0.16534	89.184	89.078	89.244	0					9	6	2	0	0	0	0.25644	1	22263	22263		3.9444	1.6417	1	30385	+		6292	11235	4221	4253	8606	8606					0.07570672596102668
HCLWPPSP	8	Unmodified	_HCLWPPSP_					0	0	0		ENST00000564907.5_1_16:57697518-57697860:+|nuORF	ENST00000564907.5_1_16:57697518-57697860:+|nuORF	ENST00000564907.5_1_16:57697518-57697860:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3288269042969	2	468.723455	935.432358	-0.29679	-0.00013911	2.9321	0.0013744	2.6354	0.0012353	468.7245711582461	32.148	0.29418	32.222	32.127	32.421	0.07378					19	13	2	0	0	0	0.3576	1	4843	4843		2.5775	0	1	22805			6293	7175	4222	4254	8607	8607					-0.03794095834609834
HDCRDEQTVP	10	Unmodified	_HDCRDEQTVP_					0	0	0			REV__ENST00000468867.1_1_1:155802637-155823172:-|nuORF	REV__ENST00000468867.1_1_1:155802637-155823172:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.5103759765625	3	400.508505	1198.50368	-0.046626	-1.8674E-05	3.786	0.0015163	3.7394	0.0014977	400.5107600991318	35.526	0.32602	35.605	35.435	35.761	0.078831					23	11	4	0	0	0	0.4676	1	5824	5824		1.4551	0.34536	1	28156	+		6294	8811	4223	4255	8608	8608					-0.08762672658576776
HDEDEGFF	8	Unmodified	_HDEDEGFF_					0	0	0		ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.1912536621094	2	498.190697	994.36684	0.24001	0.00011957	0.43412	0.00021628	0.67413	0.00033585	498.1909744522832	51.534	1.4894	51.534	51.269	52.758	0					93	51	4	0	0	0	0.51887	1	10823	10823		10.183	4.423	1	262230			6295	2724	4224	4256	8609	8609					-0.13056838546594918
HDEDEGFF	8	Unmodified	_HDEDEGFF_					0	0	0		ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.190697	994.36684	0.33017	0.00016449	0.86818	0.00043252	1.1984	0.00059701	498.1910007758629	51.453	1.117	51.523	51.262	52.379	0.069878	-0.0053704	0.00020964	NaN	10.183	80	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229190			6296	2724	4224	4256							-0.13056838546594918
HDGFLAQR	8	Unmodified	_HDGFLAQR_					0	0	0			REV__ENST00000568308.1_1_15:89728670-89736600:+|nuORF	REV__ENST00000568308.1_1_15:89728670-89736600:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.25830078125	2	472.240858	942.467164	-0.26719	-0.00012618	-1.3665	-0.00064534	-1.6337	-0.00077152	472.240131998978	33.625	0.3481	33.7	33.515	33.863	0.074322					19	14	2	0	0	0	0.3576	1	5227	5227		2.3027	0	1	18006	+		6297	9375	4225	4257	8610	8610					-0.006371367023007224
HDLCLTGLSW	10	Unmodified	_HDLCLTGLSW_					0	0	0			REV__ENST00000506287.1_1_4:8594572-8599194:+|nuORF	REV__ENST00000506287.1_1_4:8594572-8599194:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7754516601562	2	572.776416	1143.53828	0.58722	0.00033634	-2.9195	-0.0016722	-2.3323	-0.0013359	572.7748529345332	54.569	0.49355	54.634	54.514	55.007	0.065128					40	25	2	0	0	0	0.34138	1	11562	11562		18.146	1.0335	1	160270	+		6298	12227	4226	4258	8611	8611					-0.02774804779801343
HDLCLTGLSW	10	Unmodified	_HDLCLTGLSW_					0	0	0			REV__ENST00000506287.1_1_4:8594572-8599194:+|nuORF	REV__ENST00000506287.1_1_4:8594572-8599194:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2972412109375	2	572.776416	1143.53828	0.58722	0.00033634	-2.9195	-0.0016722	-2.3323	-0.0013359	572.7748529345332	54.569	0.49355	54.634	54.514	55.007	0.065128					40	25	2	0	0	0	0.31532	1	11542	11542		13.042	3.6593	1	160270	+		6299	12227	4226	4258	8612	8612					-0.02774804779801343
HDLCLTGLSW	10	Unmodified	_HDLCLTGLSW_					0	0	0			REV__ENST00000506287.1_1_4:8594572-8599194:+|nuORF	REV__ENST00000506287.1_1_4:8594572-8599194:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3659057617188	2	572.776416	1143.53828	0.42895	0.00024569	-2.27	-0.0013002	-1.841	-0.0010545	572.7750117944582	53.646	0.30465	53.711	53.534	53.838	0.06543					30	13	3	0	0	0	0.31496	1	11295	11295		13.906	1.3745	1	103630	+		6300	12227	4226	4258	8613	8613					-0.02774804779801343
HDMLETQQL	9	Unmodified	_HDMLETQQL_					0	0	0			REV__CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	REV__CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7628173828125	2	557.763506	1113.51246	-0.064881	-3.6188E-05	-0.9082	-0.00050656	-0.97308	-0.00054275	557.7627987521091	41.021	0.5262	41.111	40.902	41.428	0.089645					31	18	2	0	0	0	0.26684	1	7513	7513		10.824	2.9138	1	55705	+		6301	7750	4227	4259	8614	8614					-0.03975699022066692
HDNRRKYIF	9	Unmodified	_HDNRRKYIF_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22039794921875	3	416.891389	1247.65234	0.04528	1.8877E-05	-1.2451	-0.00051908	-1.1998	-0.00050021	417.2261269112832	49.792	0.30314	49.865	49.766	50.069	0.07312					16	10	2	0	0	0	0.25822	1	10173	10173		2.7352	0.23671	1	50488			6302	5403	4228	4260	8615	8615					0.03841846097316193
HDPSHSASVL	10	Unmodified	_HDPSHSASVL_					0	0	0			REV__ENSG00000233436|ENST00000422652|BTBD18	REV__ENSG00000233436|ENST00000422652|BTBD18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7682495117188	2	525.254163	1048.49377	0.44524	0.00023386	-0.57435	-0.00030168	-0.12911	-6.7817E-05	525.2538102948075	55.589	0.76617	55.589	55.269	56.035	0					43	26	2	0	0	0	0.28643	1	12058	12058		24.021	4.7636	1	263410	+		6303	11044	4229	4261	8616	8616					-0.02853492601616381
HDQDICVYIH	10	Unmodified	_HDQDICVYIH_					0	0	0		ENST00000259526.3_1_8:120436340-120436517:+|nuORF	ENST00000259526.3_1_8:120436340-120436517:+|nuORF	ENST00000259526.3_1_8:120436340-120436517:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7827758789062	2	621.78223	1241.54991	0.15185	9.442E-05	0.21585	0.00013421	0.36771	0.00022863	621.7822526951278	69.202	3.0924	69.202	68.828	71.92	0					177	91	2	0	0	0	0.21218	1	16264	16264		32.305	3.8186	1	9378100			6304	5858	4230	4262	8617	8617					-0.06120607756474783
HDQDICVYIH	10	Unmodified	_HDQDICVYIH_					0	0	0		ENST00000259526.3_1_8:120436340-120436517:+|nuORF	ENST00000259526.3_1_8:120436340-120436517:+|nuORF	ENST00000259526.3_1_8:120436340-120436517:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.7833251953125	2	621.78223	1241.54991	0.0067336	4.1868E-06	0.2674	0.00016627	0.27414	0.00017045	621.7822937610636	69.143	2.0258	69.205	68.945	70.971	0.062126					152	78	2	0	0	0	0.27354	3	16167	16167;16174;16414		25.399	1.3787	1	11302000			6305	5858	4230	4262	8618;8619;8620	8618					-0.06120607756474783
HDRVAQVIV	9	Unmodified	_HDRVAQVIV_					0	0	0			REV__nc|ENSG00000006715|P49754-2|VPS41	REV__nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.2723388671875	2	518.79854	1035.58253	-0.12641	-6.5584E-05	0.17776	9.2223E-05	0.051348	2.664E-05	518.7987904276516	28.528	0.77936	28.61	28.41	29.189	0.082134					109	49	4	0	0	0	0.25699	1	3869	3869		3.5965	1.5367	1	297840	+		6306	7945	4231	4263	8621	8621					0.06615967428683689
HDSYYDTW	8	Unmodified	_HDSYYDTW_					0	0	0		ENST00000407479.5_1_16:3713563-3713731:+|nuORF	ENST00000407479.5_1_16:3713563-3713731:+|nuORF	ENST00000407479.5_1_16:3713563-3713731:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2138671875	2	543.711796	1085.40904	-0.28959	-0.00015745	1.1479	0.00062411	0.85829	0.00046666	543.712504536019	20.226	0.22102	20.226	20.13	20.351	0					36	20	2	0	0	0	0.54097	1	1553	1553		0.69038	0.16561	1	15288			6307	6383	4232	4264	8622	8622					-0.13024863138230103
HEALPAVSN	9	Unmodified	_HEALPAVSN_					0	0	0		ENST00000563675.5_1_16:19421837-19441949:+|nuORF;ENST00000542583.6_1_16:19429386-19441949:+|nuORF;ENST00000541464.5_3_16:19421875-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.22503662109375	2	469.240524	936.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.97	1	85.97	85.47	86.47	0								0	0	0	0.28724	1	21280	21280		1.6526	0.17072	1				6308	7063	4233	4265	8623	8623					-0.004279761420093564
HECDSCQPCCD	11	Unmodified	_HECDSCQPCCD_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8|KCP	REV__nc|ENSG00000135253|Q6ZWJ8|KCP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.1802978515625	2	620.180308	1238.34606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.53	1	54.595	54.095	55.095	0.065128								0	0	0	0.34212	1	11557	11557		0	0	1		+		6309	9199	4234	4266	8624	8624					-0.2635757957611986
HEEFYYMGK	9	Unmodified	_HEEFYYMGK_					0	0	0			REV__ERBB3|p.L825F|1|0.31|ENSG00000065361|chr12:56097797-56097797|C/T|missense_variant	REV__ERBB3|p.L825F|1|0.31|ENSG00000065361|chr12:56097797-56097797|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2600708007812	2	602.260599	1202.50665	0.047332	2.8506E-05	-0.83412	-0.00050236	-0.78678	-0.00047385	602.2604889943659	32.939	0.54718	32.939	32.756	33.303	0					40	21	3	0	0	0	0.34704	1	5148	5148		0.52476	0.066424	1	42764	+		6310	12648	4235	4267	8625	8625					-0.08650797533755394
HEEPESFF	8	Unmodified	_HEEPESFF_					0	0	0		ENST00000552169.1_1_12:107665281-107665620:+|nuORF;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	ENST00000552169.1_1_12:107665281-107665620:+|nuORF	ENST00000552169.1_1_12:107665281-107665620:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2167053222656	2	511.216714	1020.41888	-0.11046	-5.6468E-05	0.066218	3.3852E-05	-0.044239	-2.2616E-05	511.2163530879964	32.331	0.62128	32.331	32.16	32.781	0					37	28	2	0	0	0	0.54097	1	5041	5041		0.69038	0.088878	1	19180			6311	2065	4236	4268	8626	8626					-0.09051675132843684
HEEPESFF	8	Unmodified	_HEEPESFF_					0	0	0		ENST00000552169.1_1_12:107665281-107665620:+|nuORF;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	ENST00000552169.1_1_12:107665281-107665620:+|nuORF	ENST00000552169.1_1_12:107665281-107665620:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7590637207031	2	511.216714	1020.41888	-0.050282	-2.5705E-05	-0.089924	-4.5971E-05	-0.14021	-7.1676E-05	511.2166509341961	33.473	0.88298	33.473	33.175	34.058	0					37	32	2	0	0	0	0.3576	1	5443	5443		0.69038	0	1	22531			6312	2065	4236	4268	8627	8627					-0.09051675132843684
HEERLYSTL	9	Unmodified	_HEERLYSTL_					0	0	0			REV__nc|ENSG00000152133|Q8N954-2|GPATCH11	REV__nc|ENSG00000152133|Q8N954-2|GPATCH11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2916259765625	2	574.290745	1146.56694	0.1274	7.3162E-05	0.0054593	3.1352E-06	0.13286	7.6298E-05	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.22083	2	6932	6932;7151		16.149	16.149	1	8357100	+		6313	9666	4237	4269	8628;8629	8628					-0.0004836387897739769
HEFMEAQPL	9	Unmodified	_HEFMEAQPL_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.25537109375	2	551.255317	1100.49608	-0.080242	-4.4234E-05	0.18795	0.00010361	0.10771	5.9375E-05	551.2552930716162	44.611	1.2933	44.611	43.978	45.271	0					71	45	2	0	0	0	0.30005	1	8777	8777		6.7232	0	1	103560	+		6314	9004	4238	4270	8630	8630					-0.05014780188162149
HEFMEAQPL	9	Unmodified	_HEFMEAQPL_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.254638671875	2	551.255317	1100.49608	-0.070665	-3.8954E-05	-0.0072843	-4.0155E-06	-0.077949	-4.297E-05	551.2552482435307	42.521	0.61788	42.611	42.316	42.934	0.089767					50	22	3	0	0	0	0.26684	1	7938	7938		10.824	0	1	94412	+		6315	9004	4238	4270	8631	8631					-0.05014780188162149
HEFMEAQPL	9	Unmodified	_HEFMEAQPL_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2547607421875	2	551.255317	1100.49608	0.15888	8.7586E-05	0.077828	4.2903E-05	0.23671	0.00013049	551.2552428869562	44.442	0.85795	44.529	44.13	44.988	0.08754					48	30	2	0	0	0	0.32375	1	8561	8561		3.5965	0	1	95430	+		6316	9004	4238	4270	8632	8632					-0.05014780188162149
HEFMEAQPL	9	Unmodified	_HEFMEAQPL_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	551.255317	1100.49608	-0.080242	-4.4234E-05	0.18795	0.00010361	0.10771	5.9375E-05	551.2552930716162	44.611	1.2933	44.611	43.978	45.271	0	0.040991	7.8478E-05	NaN	6.7232	71	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103560	+		6317	9004	4238	4270							-0.05014780188162149
HEFMEAQPL	9	Unmodified	_HEFMEAQPL_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	551.255317	1100.49608	0.15888	8.7586E-05	0.077828	4.2903E-05	0.23671	0.00013049	551.2552428869562	44.442	0.85795	44.529	44.13	44.988	0.08754	-0.040991	-4.2933E-05	NaN	6.7232	48	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95430	+		6318	9004	4238	4270							-0.05014780188162149
HEHDYEVVF	9	Unmodified	_HEHDYEVVF_					0	0	0		nc|ENSG00000169224|Q5JQS6-2|GCSAML;ENSG00000169224|ENST00000366488|GCSAML	nc|ENSG00000169224|Q5JQS6-2|GCSAML	nc|ENSG00000169224|Q5JQS6-2|GCSAML	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.2919921875	2	587.76182	1173.50909	0.37299	0.00021923	2.5004	0.0014696	2.8734	0.0016889	587.7633106864184	49.933	0.94561	49.933	49.621	50.567	0					55	33	2	0	0	0	0.25174	1	10329	10329		7.2892	0.18751	1	108250			6319	4330	4239	4271	8633	8633					-0.07072625804448762
HEHDYEVVF	9	Unmodified	_HEHDYEVVF_					0	0	0		nc|ENSG00000169224|Q5JQS6-2|GCSAML;ENSG00000169224|ENST00000366488|GCSAML	nc|ENSG00000169224|Q5JQS6-2|GCSAML	nc|ENSG00000169224|Q5JQS6-2|GCSAML	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.2918090820312	2	587.76182	1173.50909	0.51972	0.00030547	2.4395	0.0014339	2.9592	0.0017393	587.7632034278283	49.921	0.64317	49.995	49.594	50.237	0.07312					42	22	3	0	0	0	0.25051	1	10168	10168		7.9102	1.187	1	103230			6320	4330	4239	4271	8634	8634					-0.07072625804448762
HELQFEYP	8	Unmodified	_HELQFEYP_					0	0	0		ENSG00000158477|ENST00000289429|CD1A	ENSG00000158477|ENST00000289429|CD1A	ENSG00000158477|ENST00000289429|CD1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7479248046875	2	531.748182	1061.48181	-0.010769	-5.7266E-06	-0.70391	-0.0003743	-0.71468	-0.00038003	531.7477385797647	27.804	0.61204	27.886	27.602	28.214	0.082134					67	38	3	0	0	0	0.53926	1	3548	3548		1.8442	0	1	50284			6321	3692	4240	4272	8635	8635					-0.046471093448190004
HEPEWPLI	8	Unmodified	_HEPEWPLI_					0	0	0			REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1	REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7609558105469	2	510.761092	1019.50763	-0.094379	-4.8205E-05	-0.48355	-0.00024698	-0.57793	-0.00029519	510.7608274594376	30.399	0.3782	30.474	30.295	30.673	0.075403					31	23	2	0	0	0	0.53858	2	4257	4257;4263		2.3027	0.4585	1	25313	+		6322	10509	4241	4273	8636;8637	8636					-0.0013421510253692759
HERLQVQN	8	Unmodified	_HERLQVQN_					0	0	0		nc|ENSG00000253649|A0A1B0GVH4|PRSS51;ENSG00000253649|ENST00000647727|PRSS51	nc|ENSG00000253649|A0A1B0GVH4|PRSS51	nc|ENSG00000253649|A0A1B0GVH4|PRSS51	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2713012695312	2	512.270147	1022.52574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.388	1	14.388	13.888	14.888	0								0	0	0	0.38822	1	363	363		2.5775	0.73324	1				6323	5689	4242	4274	8638	8638					0.015379198721802823
HESPIFKQF	9	Unmodified	_HESPIFKQF_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7921142578125	2	566.792924	1131.57129	-0.19699	-0.00011165	0.047648	2.7006E-05	-0.14934	-8.4645E-05	566.7928372760804	44.063	0.90621	44.063	43.595	44.502	0					64	31	3	0	0	0	0.2546	1	8443	8443		12.241	8.2963	1	121090			6324	544	4243	4275	8639	8639					0.01077145334556917
HESPIFKQF	9	Unmodified	_HESPIFKQF_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7928466796875	2	566.792924	1131.57129	-0.04723	-2.677E-05	0.36825	0.00020872	0.32102	0.00018195	566.7929833372929	43.961	0.70272	44.05	43.632	44.335	0.088924					49	24	3	0	0	0	0.28472	1	8271	8271		8.7454	4.801	1	128430			6325	544	4243	4275	8640	8640					0.01077145334556917
HESYFPHRH	9	Unmodified	_HESYFPHRH_					0	0	0			REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.85675048828125	3	403.856456	1208.54754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.02	1	116.02	115.52	116.52	0								0	0	0	0.2927	1	29562	29562		0.23584	0.076522	1		+		6326	12851	4244	4276	8641	8641					-0.04839275379254104
HEVKQDFEKFL	11	Unmodified	_HEVKQDFEKFL_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.9134826660156	3	473.913748	1418.71942	0.0011899	5.6391E-07	-0.086278	-4.0888E-05	-0.085088	-4.0324E-05	473.9136608635892	68.692	0.5227	68.754	68.559	69.082	0.062126					50	19	3	0	0	0	0.41047	1	15838	15838		1.9275	0.71267	1	259350			6327	4147	4245	4277	8642	8642					0.026804117977462738
HFAIDSLTGEI	11	Unmodified	_HFAIDSLTGEI_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2987670898438	2	601.806228	1201.5979	0.55377	0.00033326	3.1883	0.0019187	3.742	0.002252	601.8075104101686	92.083	0.57047	92.12	91.859	92.429	0.03653					34	19	3	0	0	0	0.30798	1	22964	22964		17.113	0.96379	1	227750			6328	394	4246	4278	8643	8643					0.005167894352325675
HFAVAGETI	9	Unmodified	_HFAVAGETI_					0	0	0		ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR	ENSG00000116147|ENST00000367674|TNR	ENSG00000116147|ENST00000367674|TNR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.7430419921875	2	472.745442	943.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.33	1	27.417	26.917	27.917	0.0867								0	0	0	0.28409	1	3386	3386		2.3027	1.5091	1				6329	1944	4247	4279	8644	8644					0.0023321186339444466
HFDLNLRQF	9	Unmodified	_HFDLNLRQF_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;WDR46|p.D263*|1|0.29|ENSG00000227057|chr6:33287447-33287448|-/A|frameshift_variant	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3095703125	2	595.309272	1188.60399	-0.07773	-4.6273E-05	1.0897	0.00064872	1.012	0.00060245	595.3095748202437	58.459	0.69856	58.459	58.256	58.955	0					45	25	3	0	0	0	0.018465	2	12885	12885;12891		59.368	41.222	1	253940			6330	5610	4248	4280	8645;8646	8645					0.017233524574066905
HFDLNLRQF	9	Unmodified	_HFDLNLRQF_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;WDR46|p.D263*|1|0.29|ENSG00000227057|chr6:33287447-33287448|-/A|frameshift_variant	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.309326171875	2	595.309272	1188.60399	0.068194	4.0597E-05	0.5804	0.00034552	0.6486	0.00038611	595.309695502133	58.307	0.64642	58.377	58.184	58.83	0.070477					43	22	3	0	0	0	0.018465	1	12717	12717		59.368	40.111	1	317690			6331	5610	4248	4280	8647	8647					0.017233524574066905
HFDLSVIEL	9	Unmodified	_HFDLSVIEL_					0	0	0		nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	nc|ENSG00000093009|O75419-2|CDC45	nc|ENSG00000093009|O75419-2|CDC45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.7874755859375	2	536.787307	1071.56006	0.33214	0.00017829	0.17115	9.1873E-05	0.50329	0.00027016	536.7873105669391	78.526	1.4387	78.526	78.272	79.711	0					124	49	4	0	0	0	0.0097093	2	19042	18997;19042		68.081	15.812	1	1146300			6332	1083	4249	4281	8648;8649	8649					0.027143232404114315
HFDLSVIEL	9	Unmodified	_HFDLSVIEL_					0	0	0		nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	nc|ENSG00000093009|O75419-2|CDC45	nc|ENSG00000093009|O75419-2|CDC45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.7875366210938	2	536.787307	1071.56006	0.6033	0.00032384	-0.152	-8.1591E-05	0.4513	0.00024225	536.7871294881784	78.495	1.4843	78.525	78.2	79.685	0.030159					119	52	4	0	0	0	0.0087214	2	18880	18830;18880		71.134	9.7761	1	1366300			6333	1083	4249	4281	8650;8651	8651					0.027143232404114315
HFDMAVYL	8	Unmodified	_HFDMAVYL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.23651123046875	2	498.236396	994.458238	0.4727	0.00023552	-0.1498	-7.4636E-05	0.3229	0.00016088	498.2362296884762	68.12	1.1942	68.12	67.882	69.076	0					79	43	3	0	0	0	0.49441	1	15871	15871		13.508	4.1604	1	257540			6334	1056	4250	4282	8652	8652					-0.039212463829812805
HFDMAVYL	8	Unmodified	_HFDMAVYL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2364196777344	2	498.236396	994.458238	0.50909	0.00025365	-0.093363	-4.6517E-05	0.41573	0.00020713	498.23627822184824	68.167	0.98512	68.231	67.961	68.946	0.063507					65	37	2	0	0	0	0.49441	1	15697	15697		13.508	4.1604	1	351370			6335	1056	4250	4282	8653	8653					-0.039212463829812805
HFDMAVYL	8	Unmodified	_HFDMAVYL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	498.236396	994.458238	0.4727	0.00023552	-0.1498	-7.4636E-05	0.3229	0.00016088	498.2362296884762	68.12	1.1942	68.12	67.882	69.076	0	-0.055241	-3.391E-05	NaN	13.508	79	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257540			6336	1056	4250	4282							-0.039212463829812805
HFDPGGYI	8	Unmodified	_HFDPGGYI_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2096252441406	2	453.211235	904.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.98	1	102.98	102.48	103.48	0								0	0	0	0.38822	1	26453	26453		0.79363	0	1		+		6337	7866	4251	4283	8654	8654					-0.04811032716474983
HFEYFWSTY	9	Unmodified	_HFEYFWSTY_					0	0	0		tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.2756958007812	2	640.274564	1278.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.77	1	87.77	87.27	88.27	0								0	0	0	0.28631	1	21831	21831		1.8442	0.19162	1				6338	13627	4252	4284	8655	8655					-0.09355151281988583
HFFLKHIRLI	10	Unmodified	_HFFLKHIRLI_					0	0	0		ENST00000496418.5_1_3:132361537-132378459:-|nuORF	ENST00000496418.5_1_3:132361537-132378459:-|nuORF	ENST00000496418.5_1_3:132361537-132378459:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.5545959472656	3	441.939792	1322.79755	0.13814	6.1048E-05	-0.36766	-0.00016248	-0.22953	-0.00010144	442.27382434965523	52.135	0.29049	52.202	52.027	52.318	0.067173					13	10	2	0	0	0	0.31851	1	10812	10812		0.77653	0.32202	1	45650			6339	6839	4253	4285	8656	8656					0.14905933964291762
HFHHHGQAQP	10	Unmodified	_HFHHHGQAQP_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C;nc|ENSG00000184083|Q9NX05-2|FAM120C;FAM120C|p.R250Kfs*31|1|0.08|ENSG00000184083|chrX:54159567-54159568|-/ATATT|frameshift_variant	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7787475585938	2	598.278838	1194.54312	0.18758	0.00011222	2.2492	0.0013457	2.4368	0.0014579	598.2805312077356	50.897	0.68664	50.967	50.467	51.154	0.069874					42	25	3	0	0	0	0.31783	1	10464	10464		3.9444	0.66309	1	244590			6340	4956	4254	4286	8657	8657					-0.04636739802140255
HFHKHQLW	8	Unmodified	_HFHKHQLW_					0	0	0		ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7953491210938	2	566.793592	1131.57263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.063	1	32.137	31.637	32.637	0.07378								0	0	0	0.38822	1	4788	4788		0.69038	0.16561	1				6341	5731	4255	4287	8658	8658					0.012108242139674985
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(67)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7708740234375	2	605.771134	1209.52771	0.68677	0.00041602	-0.72316	-0.00043807	-0.03639	-2.2044E-05	605.7706741518001	47.254	0.97408	47.254	46.967	47.941	0					75	32	3	0	0	0	0.0099477	3	9487	9435;9487;9536		67.344	44.195	1	225250			6342	3180	4256	4288	8659;8660;8661	8660		205			-0.06866787434228172
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(64)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7706298828125	2	605.771134	1209.52771	0.51464	0.00031175	-1.0451	-0.00063309	-0.53047	-0.00032134	605.770245332974	48.277	2.1129	48.277	47.763	49.876	0					158	73	3	0	0	0	0.011655	1	9753	9753		64.236	47.294	1	293800			6343	3180	4256	4288	8662	8662		205			-0.06866787434228172
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(97)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7711791992188	2	605.771134	1209.52771	0.76441	0.00046306	-0.51991	-0.00031495	0.2445	0.00014811	605.7707190580426	47.095	0.84851	47.179	46.91	47.759	0.083096					79	33	3	0	0	0	0.0043406	2	9329	9281;9329		97.075	73.926	1	274500			6344	3180	4256	4288	8663;8664	8664		205			-0.06866787434228172
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(89)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7710571289062	2	605.771134	1209.52771	0.72513	0.00043927	-0.97943	-0.00059331	-0.25429	-0.00015404	605.7703635275271	48.166	1.9436	48.246	47.685	49.629	0.080032					150	69	3	0	0	0	0.004541	3	9626	9577;9626;9747		89.427	64.753	1	341480			6345	3180	4256	4288	8665;8666;8667	8666		205			-0.06866787434228172
HFIAEHYMF	9	Unmodified	_HFIAEHYMF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7737426757812	2	597.773677	1193.5328	0.40461	0.00024187	-0.26351	-0.00015752	0.14111	8.435E-05	597.7734967573882	53.735	0.77862	53.735	53.544	54.322	0					40	27	2	0	0	0	0.23216	1	11494	11494		14.838	6.6827	1	94487			6346	3180	4256	4289	8668	8668					-0.05622483571619341
HFIAEHYMF	9	Unmodified	_HFIAEHYMF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7725830078125	2	597.773677	1193.5328	0.34285	0.00020495	-0.064528	-3.8573E-05	0.27832	0.00016637	597.7739269349466	53.632	0.75965	53.698	53.555	54.315	0.06543					49	30	3	0	0	0	0.14091	2	11285	11285;11371		25.399	18.298	1	88608			6347	3180	4256	4289	8669;8670	8669					-0.05622483571619341
HFIAQYLQE	9	Unmodified	_HFIAQYLQE_					0	0	0			REV__ENST00000596008.1_1_19:7591330-7591862:+|nuORF	REV__ENST00000596008.1_1_19:7591330-7591862:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7909545898438	2	574.790381	1147.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.9	1	102.95	102.45	103.45	0.040916								0	0	0	0.28527	1	26265	26265		2.0598	0	1		+		6348	8309	4257	4290	8671	8671					-0.001671585280519139
HFIAQYLQE	9	Unmodified	_HFIAQYLQE_					0	0	0			REV__ENST00000596008.1_1_19:7591330-7591862:+|nuORF	REV__ENST00000596008.1_1_19:7591330-7591862:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7899169921875	2	574.790381	1147.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.17	1	103.21	102.71	103.71	0.040916								0	0	0	0.27613	1	26344	26344		3.9444	0.3479	1		+		6349	8309	4257	4290	8672	8672					-0.001671585280519139
HFIAQYLQE	9	Unmodified	_HFIAQYLQE_					0	0	0			REV__ENST00000596008.1_1_19:7591330-7591862:+|nuORF	REV__ENST00000596008.1_1_19:7591330-7591862:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7899169921875	2	574.790381	1147.56621	0.40292	0.0002316	0.42884	0.00024649	0.83176	0.00047809	574.7903602342456	102.77	0.65054	102.81	102.56	103.21	0.040909					62	53	2	0	0	0	0.25644	1	26344	26344		3.9444	2.4625	1	75386	+		6350	8309	4257	4290	8673	8673					-0.001671585280519139
HFIFMVLL	8	Unmodified	_HFIFMVLL_					0	0	0		ENST00000552801.6_1_12:112370518-112374599:-|nuORF	ENST00000552801.6_1_12:112370518-112374599:-|nuORF	ENST00000552801.6_1_12:112370518-112374599:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.811767578125	2	510.290974	1018.56739	0.58345	0.00029773	0.7221	0.00036848	1.3055	0.00066621	510.291967817261	83.727	0.78946	83.727	83.425	84.215	0					51	26	3	0	0	0	0.35256	1	20547	20547		17.087	3.5787	1	138370			6351	7109	4258	4291	8674	8674					0.05885384307168806
HFIHKCPLIR	10	Unmodified	_HFIHKCPLIR_					0	0	0			REV__ENSG00000163162|ENST00000295317|RNF149	REV__ENSG00000163162|ENST00000295317|RNF149	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.3618774414062	2	632.360785	1262.70702	0.33834	0.00021395	1.3568	0.00085799	1.6951	0.0010719	632.3618103004964	104.55	0.43149	104.59	104.36	104.8	0.034004					78	41	3	0	0	0	0.47288	1	26703	26703		0.45834	0.057624	1	169110	+		6352	9928	4259	4292	8675	8675					0.08617141644390358
HFIRQMFK	8	Unmodified	_HFIRQMFK_					0	0	0			REV__tr|U7SXQ0|U7SXQ0_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00917PE=4SV=1	REV__tr|U7SXQ0|U7SXQ0_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00917PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7998657226562	2	553.800029	1105.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.09	1	115.1	114.6	115.6	0.013092								0	0	0	0.38822	1	29265	29265		0.69038	0	1		+		6353	13226	4260	4293	8676	8676					0.0369351928186461
HFLHSTFML	9	Unmodified	_HFLHSTFML_					0	0	0			REV__ENST00000489429.5_1_7:44268510-44268582:-|nuORF	REV__ENST00000489429.5_1_7:44268510-44268582:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.783935546875	2	566.784044	1131.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.538	1	18.538	18.038	19.038	0								0	0	0	0.29233	1	1148	1148		0.6015	0	1		+		6354	12140	4261	4294	8677	8677					-0.00697893191932053
HFLLIWSHF	9	Unmodified	_HFLLIWSHF_					0	0	0			REV__nc|nan|O96002|CXorf1	REV__nc|nan|O96002|CXorf1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3237915039062	2	600.321651	1198.62875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.404	1	14.404	13.904	14.904	0								0	0	0	0.29233	1	366	366		0.6015	0	1		+		6355	12928	4262	4295	8678	8678					0.037380323307843355
HFLQERVSL	9	Unmodified	_HFLQERVSL_					0	0	0			REV__ENST00000552153.5_1_12:49497576-49504491:-|nuORF	REV__ENST00000552153.5_1_12:49497576-49504491:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7720336914062	2	564.811648	1127.60874	0.23604	0.00013332	0.4936	0.00027879	0.72964	0.00041211	564.8120815581393	78.974	0.9503	78.974	78.361	79.311	0					59	32	3	0	0	0	0.11557	1	19149	19149		41.84	5.3334	1	375600	+		6356	9350	4263	4296	8679	8679					0.050042366001889604
HFLQERVSL	9	Unmodified	_HFLQERVSL_					0	0	0			REV__ENST00000552153.5_1_12:49497576-49504491:-|nuORF	REV__ENST00000552153.5_1_12:49497576-49504491:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.772216796875	2	564.811648	1127.60874	0.29086	0.00016428	-0.2954	-0.00016684	-0.0045322	-2.5599E-06	564.8113666539425	78.962	0.59654	78.992	78.712	79.308	0.030159					48	20	3	0	0	0	0.15403	1	18974	18974		34.402	9.4108	1	429590	+		6357	9350	4263	4296	8680	8680					0.050042366001889604
HFLQIMINAI	10	Unmodified	_HFLQIMINAI_					0	0	0		ENST00000360416.7_1_17:8378590-8378773:-|nuORF	ENST00000360416.7_1_17:8378590-8378773:-|nuORF	ENST00000360416.7_1_17:8378590-8378773:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.332275390625	2	600.333901	1198.65325	0.21957	0.00013182	-3.0653	-0.0018402	-2.8458	-0.0017084	600.3320138536985	51.628	0.41119	51.628	51.475	51.886	0					21	13	2	0	0	0	0.46656	1	10871	10871		1.6526	0	1	65161			6358	6153	4264	4297	8681	8681					0.06186924421990625
HFLRRVIFTT	10	Unmodified	_HFLRRVIFTT_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3775634765625	2	645.377489	1288.74043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.44	1	106.44	105.94	106.94	0								0	0	0	0.33984	1	27447	27447		0.40072	0	1		+		6359	7908	4265	4298	8682	8682					0.10760466687906955
HFMSILHHCL	10	Unmodified	_HFMSILHHCL_					0	0	0		ENST00000556894.1_1_14:59791074-59792827:+|nuORF;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1	ENST00000556894.1_1_14:59791074-59792827:+|nuORF	ENST00000556894.1_1_14:59791074-59792827:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.3032836914062	2	619.302078	1236.5896	-0.18086	-0.00011201	-0.32003	-0.0001982	-0.50089	-0.0003102	619.3018334938988	38.653	0.82375	38.653	38.362	39.186	0					70	30	3	0	0	0	0.46656	1	6971	6971		1.6526	0.58116	1	150310			6360	1208	4266	4299	8683	8683					-0.01922759286708242
HFPHLFCDYKF	11	Unmodified	_HFPHLFCDYKF_					0	0	0			REV__ENST00000483012.1_1_7:148516133-148534012:-|nuORF	REV__ENST00000483012.1_1_7:148516133-148534012:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2613220214844	3	485.228902	1452.66488	-0.30523	-0.00014811	0.81807	0.00039695	0.51283	0.00024884	485.2291749729051	32.591	0.26647	32.665	32.57	32.837	0.07378					21	14	2	0	0	0	0.311	1	4948	4948		0.50596	0	1	12100	+		6361	8625	4267	4300	8684	8684					-0.04334878554664101
HFRNDRRK	8	Unmodified	_HFRNDRRK_					0	0	0			REV__nc|ENSG00000077684|Q6IE81-2|JADE1	REV__nc|ENSG00000077684|Q6IE81-2|JADE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.8109130859375	2	564.810305	1127.60606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.21	1	119.22	118.72	119.72	0.013062								0	0	0	0.38822	1	29971	29971		0.69038	0	1		+		6362	8214	4268	4301	8685	8685					0.047358259858810925
HFSYNWTF	8	Unmodified	_HFSYNWTF_					0	0	0		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2420043945312	2	551.243067	1100.47158	0.28423	0.00015668	-1.9365	-0.0010675	-1.6523	-0.00091082	551.242017880912	52.57	0.99841	52.57	52.19	53.188	0					75	35	3	0	0	0	0.46914	1	11081	11081		16.942	2.104	1	130800			6363	2094	4269	4302	8686	8686					-0.07463672279413913
HFTMARGVL	9	Unmodified	_HFTMARGVL_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7613525390625	2	516.276386	1030.53822	0.57499	0.00029685	-0.99779	-0.00051514	-0.4228	-0.00021828	516.2758194033279	64.047	1.1843	64.047	63.504	64.688	0					93	41	3	0	0	0	0.23216	1	14723	14723		14.838	0.93222	1	409570	+		6364	9064	4270	4303	8687	8687					0.024172400108682268
HFVCLMIII	9	Unmodified	_HFVCLMIII_					0	0	0		nc|ENSG00000174130|Q9Y2C9-2|TLR6;ENSG00000174130|ENST00000508254|TLR6	nc|ENSG00000174130|Q9Y2C9-2|TLR6	nc|ENSG00000174130|Q9Y2C9-2|TLR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.8035888671875	2	544.803391	1087.59223	0.55911	0.0003046	-0.30892	-0.0001683	0.25019	0.0001363	544.8031616494051	81.158	0.47659	81.182	81	81.477	0.023605					28	16	2	0	0	0	0.2796	1	19692	19692		9.3474	1.1919	1	127800			6365	4567	4271	4304	8688	8688					0.051936961182263985
HFVPFLPWI	9	Unmodified	_HFVPFLPWI_					0	0	0			REV__ENST00000477560.5_1_4:52775105-52779747:+|nuORF	REV__ENST00000477560.5_1_4:52775105-52779747:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3209838867188	2	578.32112	1154.62769	0.26939	0.00015579	-0.48909	-0.00028285	-0.2197	-0.00012705	578.3207283359675	86.982	1.1176	86.982	86.831	87.948	0					95	44	3	0	0	0	0.33356	1	21779	21779		2.3027	0.4585	1	355750	+		6366	8636	4272	4305	8689	8689					0.056558179619059956
HFVQLVPIW	9	Unmodified	_HFVQLVPIW_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.821044921875	2	569.824027	1137.6335	-0.093341	-5.3188E-05	-3.626	-0.0020662	-3.7194	-0.0021194	569.8217791581293	40.212	0.27279	40.301	40.164	40.437	0.089645					13	9	2	0	0	0	0.3354	1	7246	7246		2.0598	0.21551	1	29872	+		6367	12402	4273	4306	8690	8690					0.07018916473543868
HFVQLVPIW	9	Unmodified	_HFVQLVPIW_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	569.824027	1137.6335	-0.25003	-0.00014247	-3.0932	-0.0017626	-3.3432	-0.001905	569.822269373853	40.338	0.29707	40.338	40.208	40.505	0	0.018386	0.00018408	NaN	2.0598	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18381	+		6368	12402	4273	4306							0.07018916473543868
HFVQLVPIW	9	Unmodified	_HFVQLVPIW_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	569.824027	1137.6335	-0.093341	-5.3188E-05	-3.626	-0.0020662	-3.7194	-0.0021194	569.8217791581293	40.212	0.27279	40.301	40.164	40.437	0.089645	-0.018386	-0.00042318	NaN	2.0598	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29872	+		6369	12402	4273	4306							0.07018916473543868
HFWQFVMA	8	Unmodified	_HFWQFVMA_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2899780273438	2	533.25238	1064.49021	0.4713	0.00025132	-0.41342	-0.00022046	0.057876	3.0862E-05	533.2513876288991	47.401	0.70792	47.401	47.144	47.852	0					65	23	5	0	0	0	0.34473	1	9588	9588		22.453	0	1	323750	+		6370	9157	4274	4307	8691	8691					-0.039458339091652306
HFYPNPLA	8	Unmodified	_HFYPNPLA_					0	0	0		ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.74261474609375	2	479.742702	957.470852	-0.11887	-5.7025E-05	-0.53973	-0.00025893	-0.6586	-0.00031596	479.74243468727764	35.876	0.31686	35.876	35.705	36.022	0					19	12	2	0	0	0	0.53817	1	6064	6064		2.5775	0	1	30983			6371	5734	4275	4308	8692	8692					-0.009584669284436131
HFYPNPLA	8	Unmodified	_HFYPNPLA_					0	0	0		ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	479.742702	957.470852	-0.11887	-5.7025E-05	-0.53973	-0.00025893	-0.6586	-0.00031596	479.74243468727764	35.876	0.31686	35.876	35.705	36.022	0	-0.016279	-1.5788E-05	NaN	2.5775	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30983			6372	5734	4275	4308							-0.009584669284436131
HFYPNPLA	8	Unmodified	_HFYPNPLA_					0	0	0		ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	479.742702	957.470852	-0.098394	-4.7204E-05	-0.48157	-0.00023103	-0.57996	-0.00027823	479.7425862491224	35.83	0.33482	35.909	35.711	36.046	0.078827	0.016279	4.0021E-05	NaN	2.5775	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28414			6373	5734	4275	4308							-0.009584669284436131
HGAILGTGYFC	11	Unmodified	_HGAILGTGYFC_					0	0	0			REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31	REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2680053710938	2	569.771134	1137.52771	-0.16439	-9.3667E-05	0.97612	0.00055616	0.81172	0.0004625	569.7738585807072	43.425	0.88834	43.425	42.999	43.887	0					70	31	3	0	0	0	0.40578	1	8307	8307		2.9952	0	1	127240	+		6374	8472	4276	4309	8693	8693					-0.03554787434222817
HGCTQFFL	8	Unmodified	_HGCTQFFL_					0	0	0			REV__ENST00000493268.1_1_7:154595624-154650193:+|nuORF	REV__ENST00000493268.1_1_7:154595624-154650193:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7204895019531	2	476.720913	951.427273	0.22879	0.00010907	-0.44744	-0.00021331	-0.21866	-0.00010424	476.72065590873956	83.224	1.1509	83.224	82.928	84.079	0					55	38	2	0	0	0	0.53771	1	20492	20492		2.8892	0	1	115840	+		6375	12162	4277	4310	8694	8694					-0.05038399697230034
HGDCYYVL	8	Unmodified	_HGDCYYVL_					0	0	0		ENSG00000198788|ENST00000675028|MUC2;nc|ENSG00000198788|Q02817|MUC2	ENSG00000198788|ENST00000675028|MUC2	ENSG00000198788|ENST00000675028|MUC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.21002197265625	2	485.210378	968.406203	-0.52533	-0.0002549	1.1536	0.00055976	0.62831	0.00030486	485.2108562715672	42.258	0.45942	42.348	42.138	42.598	0.089764					29	16	3	0	0	0	0.53423	1	7872	7872		5.2307	0	1	70024			6376	5405	4278	4311	8695	8695					-0.07926409796743883
HGELQKAILE	10	Unmodified	_HGELQKAILE_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.3167114257812	2	569.316763	1136.61897	-0.17259	-9.8256E-05	0.13367	7.6101E-05	-0.038915	-2.2155E-05	569.3168279716866	29.932	0.82885	29.932	29.721	30.55	0					99	40	4	0	0	0	0.47318	1	4414	4414		0.40072	0	1	146220			6377	5692	4279	4312	8696	8696					0.05612799534765145
HGGAAGGA	8	Unmodified	_HGGAAGGA_					0	0	0		ENST00000555657.5_1_14:21491412-21493012:-|nuORF	ENST00000555657.5_1_14:21491412-21493012:-|nuORF	ENST00000555657.5_1_14:21491412-21493012:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3029174804688	1	597.273949	596.266673	0.4229	0.00025259	-1.6281	-0.00097244	-1.2052	-0.00071985	597.2731972129831	69.095	0.26363	69.095	68.868	69.132	0					12	9	2	0	0	0	0.3576	1	16133	16133		0	0	1	101210			6378	7125	4280	4313	8697	8697					-0.047609862990952934
HGHRGHDGEDD	11	Unmodified	_HGHRGHDGEDD_					0	0	0		ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.7435302734375	2	616.245389	1230.47622	-0.32568	-0.0002007	0.055216	3.4027E-05	-0.27046	-0.00016667	616.2455840091876	19.767	0.041241	19.862	19.838	19.88	0.095232					6	4	2	0	0	0	0.31102	1	1349	1349		0	0	1	9501.3			6379	2473	4281	4314	8698	8698					-0.1297943987456165
HGIGAELVI	9	Unmodified	_HGIGAELVI_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.90325927734375	2	454.763635	907.512717	0.042941	1.9528E-05	0.24411	0.00011101	0.28705	0.00013054	454.7635702894007	58.56	0.42968	58.56	58.416	58.846	0					18	14	2	0	0	0	0.25051	1	12936	12936		7.9102	0	1	115220	+		6380	10881	4282	4315	8699	8699					0.055260887600866226
HGISSQRFY	9	Unmodified	_HGISSQRFY_					0	0	0		nc|ENSG00000179886|Q53EQ6-2|TIGD5;ENSG00000179886|ENST00000504548|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7722778320312	2	547.772522	1093.53049	-0.04315	-2.3636E-05	0.17908	9.8095E-05	0.13593	7.4459E-05	547.7725307601469	29.436	0.90858	29.514	29.289	30.197	0.078287					125	53	4	0	0	0	0.34704	1	4133	4133		0.52476	0.52476	1	266890			6381	4792	4283	4316	8700	8700					-0.012531959850548446
HGKIKLRKRK	10	Unmodified	_HGKIKLRKRK_					0	0	0		ENSG00000069943|ENST00000164305|PIGB;ENST00000569909.1_1_15:55611448-55611893:+|nuORF;ENST00000566072.1_1_15:55611475-55617022:+|nuORF	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.4280395507812	2	632.427848	1262.84114	0.26449	0.00016727	-1.3497	-0.00085362	-1.0853	-0.00068634	632.4266081303167	107.99	0.11354	108.01	107.97	108.08	0.022224					24	16	2	0	0	0	0.31853	1	27664	27664		0.40072	0.093686	1	6585900			6382	751	4284	4317	8701	8701					0.22023543461432382
HGKKKRRKR	9	Unmodified	_HGKKKRRKR_					0	0	0			REV__SP140L|p.W220C|1|0.34|ENSG00000185404|chr2:230383532-230383532|G/T|missense_variant	REV__SP140L|p.W220C|1|0.34|ENSG00000185404|chr2:230383532-230383532|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8525390625	2	597.394339	1192.77413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.67	1	100.72	100.22	101.22	0.042839								0	0	0	0.2927	1	25597	25597		0.52476	0.066424	1		+		6383	10668	4285	4318	8702	8702					0.18544932970326045
HGPIESFEK	9	Unmodified	_HGPIESFEK_					0	0	0			REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2794189453125	2	522.261456	1042.50836	-0.11631	-6.0744E-05	0.67696	0.00035355	0.56065	0.0002928	522.2618575444152	31.564	1.4344	31.564	31.347	32.781	0					147	63	4	0	0	0	0.22083	1	4843	4843		16.149	2.2431	1	424900	+		6384	10871	4286	4319	8703	8703					-0.011194204534831442
HGPPATHP	8	Unmodified	_HGPPATHP_					0	0	0		ENSG00000277258|ENST00000620225|PCGF2	ENSG00000277258|ENST00000620225|PCGF2	ENSG00000277258|ENST00000620225|PCGF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.2041320800781	2	407.203744	812.392936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.356	1	74.356	73.856	74.856	0								0	0	0	0.38822	1	17736	17736		0.79363	0	1				6385	5754	4287	4320	8704	8704					-0.02076479793811359
HGPPHTPA	8	Unmodified	_HGPPHTPA_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.2040100097656	2	407.203744	812.392936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.238	1	83.238	82.738	83.738	0								0	0	0	0.38822	1	20449	20449		0.79363	0	1		+		6386	10586	4288	4321	8705	8705					-0.020764797938227275
HGPPHTPA	8	Unmodified	_HGPPHTPA_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.2040100097656	2	407.203744	812.392936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.77	1	84.77	84.27	85.27	0								0	0	0	0.38822	1	20914	20914		0.79363	0	1		+		6387	10586	4288	4321	8706	8706					-0.020764797938227275
HGPVCWATSF	10	Unmodified	_HGPVCWATSF_					0	0	0			REV__ENST00000393193.6_1_17:49248968-49249034:+|nuORF	REV__ENST00000393193.6_1_17:49248968-49249034:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2527465820312	2	552.750201	1103.48585	0.47273	0.0002613	0.81361	0.00044972	1.2863	0.00071102	553.2528394136849	87.841	1.0541	87.871	87.582	88.636	0.030037					125	39	4	0	0	0	0.21218	1	21723	21723		32.305	1.6689	1	1996300	+		6388	11699	4289	4322	8707	8707					-0.06175343122754384
HGQKKHKR	8	Unmodified	_HGQKKHKR_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8044128417969	2	509.804491	1017.59443	0.25393	0.00012946	-1.4658	-0.00074726	-1.2118	-0.0006178	509.80360144675905	77.997	0.46547	77.997	77.869	78.335	0					22	15	2	0	0	0	0.54081	1	18918	18918		0.79363	0	1	83240	+		6389	8790	4290	4323	8708	8708					0.08633628962547846
HGQQLPET	8	Unmodified	_HGQQLPET_					0	0	0		ENST00000529265.5_1_11:61717864-61725974:+|nuORF;ENST00000524877.5_1_11:61722897-61725974:+|nuORF	ENST00000529265.5_1_11:61717864-61725974:+|nuORF	ENST00000529265.5_1_11:61717864-61725974:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.2253723144531	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.824	1	92.824	92.324	93.324	0								0	0	0	0.38822	1	23363	23363		2.3027	1.5091	1				6390	6984	4291	4324	8709	8709					-0.022685491760967125
HGRFKRVL	8	Unmodified	_HGRFKRVL_					0	0	0			REV__ENST00000469464.1_1_10:1262889-1279753:-|nuORF	REV__ENST00000469464.1_1_10:1262889-1279753:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.810791015625	2	506.811785	1011.60902	0.2398	0.00012154	-1.7163	-0.00086982	-1.4765	-0.00074829	506.81084971924207	50.346	0.263	50.42	50.263	50.526	0.07312					15	8	2	0	0	0	0.53423	1	10314	10314		5.2307	2.2354	1	53734	+		6391	10679	4292	4325	8710	8710					0.1036770111070382
HGVAEKMPTGS	11	Unmodified	_HGVAEKMPTGS_					0	0	0			REV__ENSG00000166166|ENST00000389749|TRMT61A	REV__ENSG00000166166|ENST00000389749|TRMT61A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2822875976562	2	557.271498	1112.52844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.084	1	42.084	41.584	42.584	0								0	0	0	0.32709	1	7922	7922		5.2969	0.54088	1		+		6392	10064	4293	4326	8711	8711					-0.02331992785161674
HGWLFYVQ	8	Unmodified	_HGWLFYVQ_					0	0	0			REV__ENSG00000163982|ENST00000296358|OTOP1	REV__ENSG00000163982|ENST00000296358|OTOP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2645263671875	2	525.263802	1048.51305	-0.17768	-9.3331E-05	1.6141	0.00084783	1.4364	0.0007545	525.2646830244826	25.546	0.30205	25.638	25.51	25.812	0.091507					38	23	2	0	0	0	0.54081	1	2871	2871		0.79363	0	1	28855	+		6393	9970	4294	4327	8712	8712					-0.009264915200674295
HGYDKDPVL	9	Unmodified	_HGYDKDPVL_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2615356445312	2	522.261456	1042.50836	-0.11631	-6.0744E-05	0.67696	0.00035355	0.56065	0.0002928	522.2618575444152	31.564	1.4344	31.564	31.347	32.781	0					147	63	4	0	0	0	0.013066	3	4784	4742;4784;4799		63.227	25.253	1	424900			6394	3315	4295	4328	8713;8714;8715	8714					-0.011194204534831442
HGYDKDPVL	9	Unmodified	_HGYDKDPVL_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.261474609375	2	522.261456	1042.50836	-0.13878	-7.2478E-05	0.70776	0.00036964	0.56899	0.00029716	522.2618302335737	31.531	1.1763	31.605	31.368	32.544	0.073782					143	56	4	0	0	0	0.024248	4	4643	4601;4643;4662;4699		55.235	20.982	1	424940			6395	3315	4295	4328	8716;8717;8718;8719	8717					-0.011194204534831442
HHARKDADSEV	11	Unmodified	_HHARKDADSEV_					0	0	0			REV__nc|ENSG00000125952|P61244-2|MAX	REV__nc|ENSG00000125952|P61244-2|MAX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.8049926757812	2	632.805082	1263.59561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.569	1	24.665	24.165	25.165	0.096073								0	0	0	0.34212	1	2596	2596		0	0	1		+		6396	12785	4296	4329	8720	8720					-0.0256424624990359
HHCVVLGIL	9	Unmodified	_HHCVVLGIL_					0	0	0		ENST00000500113.1_1_11:77850879-77852634:+|nuORF	ENST00000500113.1_1_11:77850879-77852634:+|nuORF	ENST00000500113.1_1_11:77850879-77852634:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7809143066406	2	495.781305	989.548056	0.57975	0.00028743	-1.1087	-0.00054966	-0.52893	-0.00026223	495.78028144285963	85.841	1.0938	85.866	85.492	86.586	0.025169					104	41	4	0	0	0	0.23437	1	21270	21270		14.582	0	1	602660			6397	6858	4297	4330	8721	8721					0.0528642801625665
HHDPENWTEF	10	Unmodified	_HHDPENWTEF_					0	0	0			REV__ENST00000514698.5_1_4:980866-997838:+|nuORF	REV__ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.2053527832031	3	437.851148	1310.53161	0.2912	0.0001275	1.0552	0.000462	1.3464	0.00058951	438.1867299513697	35.839	0.64631	35.839	35.561	36.208	0					30	24	2	0	0	0	0.31852	1	5957	5957		0.69767	0.07084	1	34177	+		6398	8998	4298	4331	8722	8722					-0.11123026406812642
HHFCCYLHRVL	11	Unmodified	_HHFCCYLHRVL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.8994445800781	3	476.565631	1426.67506	-0.26402	-0.00012583	-3.0641	-0.0014602	-3.3281	-0.0015861	476.89863561739367	44.402	0.34754	44.491	44.335	44.682	0.088921					19	11	3	0	0	0	0.41309	1	8485	8485		1.3296	0.11481	1	50572			6399	5757	4299	4332	8723	8723					-0.02120594101097595
HHFCCYLHRVL	11	Unmodified	_HHFCCYLHRVL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	476.565631	1426.67506	-0.42822	-0.00020407	-2.7687	-0.0013195	-3.1969	-0.0015235	476.56418318635957	44.516	0.30341	44.516	44.329	44.632	0	0.012544	0.00019393	NaN	1.3296	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66486			6400	5757	4299	4332							-0.02120594101097595
HHGAGAFF	8	Unmodified	_HHGAGAFF_					0	0	0		ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1986083984375	2	422.198462	842.382371	0.50574	0.00021352	-0.50726	-0.00021417	-0.0015258	-6.4418E-07	422.1986089762605	77.061	1.1071	77.061	76.173	77.28	0					84	41	3	0	0	0	0.54081	1	18480	18480		0.79363	0	1	218580			6401	3511	4300	4333	8724	8724					-0.0451246244823551
HHGAGAFF	8	Unmodified	_HHGAGAFF_					0	0	0		ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1991271972656	2	422.198462	842.382371	0.47269	0.00019957	0.55963	0.00023627	1.0323	0.00043584	422.19869108055224	77.582	0.78677	77.582	77.389	78.176	0					39	28	2	0	0	0	0.54081	1	18694	18694		0.79363	0	1	174080			6402	3511	4300	4333	8725	8725					-0.0451246244823551
HHGAGAFF	8	Unmodified	_HHGAGAFF_					0	0	0		ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.198486328125	2	422.198462	842.382371	0.51799	0.0002187	0.42508	0.00017947	0.94307	0.00039816	422.19855930917373	78.715	2.6306	78.715	78.097	80.728	0					156	91	2	0	0	0	0.54081	9	18948	18948;18998;19044;19088;19134;19179;19285;19335;19383		0.79363	0.79363	1	1559000			6403	3511	4300	4333	8726;8727;8728;8729;8730;8731;8732;8733;8734	8726					-0.0451246244823551
HHGAGAFF	8	Unmodified	_HHGAGAFF_					0	0	0		ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1988220214844	2	422.198462	842.382371	0.22037	9.3039E-05	-0.4408	-0.00018611	-0.22043	-9.3067E-05	422.1986065333746	77.07	0.84615	77.105	76.383	77.229	0.034485					72	30	3	0	0	0	0.54081	1	18363	18363		0.79363	0	1	213260			6404	3511	4300	4333	8735	8735					-0.0451246244823551
HHGAGAFF	8	Unmodified	_HHGAGAFF_					0	0	0		ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1985168457031	2	422.198462	842.382371	0.16496	6.9646E-05	0.14642	6.1819E-05	0.31138	0.00013147	422.1987054846548	78.771	2.7937	78.801	77.461	80.254	0.030159					196	97	3	0	0	0	0.54081	6	18758	18758;18807;18857;18952;19089;19188		0.79363	0.79363	1	1882800			6405	3511	4300	4333	8736;8737;8738;8739;8740;8741	8736					-0.0451246244823551
HHHHHHHYHF	10	Unmodified	_HHHHHHHYHF_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.8772277832031	3	475.878477	1424.6136	0.10192	4.8499E-05	-2.2201	-0.0010565	-2.1182	-0.001008	475.8772988405036	55.557	0.57664	55.622	55.463	56.039	0.065128					40	20	3	0	0	0	0.46426	1	11915	11915		2.086	0.75636	1	228620			6406	5234	4301	4334	8742	8742					-0.08172021693849274
HHHIALEL	8	Unmodified	_HHHIALEL_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.8245544433594	2	485.266876	968.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.465	1	66.465	65.965	66.965	0								0	0	0	0.38822	1	15332	15332		5.2307	0	1		+		6407	12825	4302	4335	8743	8743					0.03368026711439143
HHHKEWDKH	9	Unmodified	_HHHKEWDKH_					0	0	0			REV__ENST00000521078.1_1_8:92972472-92983113:-|nuORF	REV__ENST00000521078.1_1_8:92972472-92983113:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2992553710938	2	627.29977	1252.58499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.533	1	17.533	17.033	18.033	0								0	0	0	0.2927	1	940	940		0.52476	0	1		+		6408	8221	4303	4336	8744	8744					-0.031201841136407893
HHKPGEMPYV	10	Unmodified	_HHKPGEMPYV_					0	0	0		ENSG00000169548|ENST00000302097|ZNF280A;ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000169548|ENST00000302097|ZNF280A	ENSG00000169548|ENST00000302097|ZNF280A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8131713867188	2	597.789858	1193.56516	0.16644	9.9497E-05	1.452	0.00086798	1.6184	0.00096748	597.7908464594653	37.459	0.17247	37.544	37.397	37.57	0.084476					7	5	2	0	0	0	0.31838	1	6365	6365		1.4819	0	1	17804			6409	4343	4304	4337	8745	8745					-0.023876961686028153
HHLHCLVV	8	Unmodified	_HHLHCLVV_					0	0	0			REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2575378417969	2	479.257997	956.501441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.034	1	36.115	35.615	36.615	0.081715								0	0	0	0.38822	1	5976	5976		0.79363	0	1		+		6410	10784	4305	4338	8746	8746					0.02144988184943486
HHPDPNTM	8	Unmodified	_HHPDPNTM_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.218505859375	2	474.703251	947.39195	-0.14182	-6.7322E-05	-1.416	-0.0006722	-1.5579	-0.00073952	474.70252746851054	35.462	0.5582	35.462	35.314	35.872	0					34	20	2	0	0	0	0.53423	1	6027	6027		5.2307	0.47466	1	70208			6411	740	4306	4339	8747	8747					-0.08385062225033835
HHPSCPTELLL	11	Unmodified	_HHPSCPTELLL_					0	0	0		ENST00000544907.6_1_17:26671671-26671929:+|nuORF	ENST00000544907.6_1_17:26671671-26671929:+|nuORF	ENST00000544907.6_1_17:26671671-26671929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3147583007812	2	623.816073	1245.61759	0.064095	3.9983E-05	-3.1072	-0.0019383	-3.0431	-0.0018984	623.8144368476948	76.382	0.4499	76.382	76.253	76.702	0					21	15	2	0	0	0	0.38315	1	18363	18363		8.1555	0.24537	1	317900			6412	7071	4307	4340	8748	8748					0.004608421743341751
HHPSCPTELLL	11	Unmodified	_HHPSCPTELLL_					0	0	0		ENST00000544907.6_1_17:26671671-26671929:+|nuORF	ENST00000544907.6_1_17:26671671-26671929:+|nuORF	ENST00000544907.6_1_17:26671671-26671929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.81396484375	2	623.816073	1245.61759	0.22951	0.00014317	-3.3512	-0.0020905	-3.1217	-0.0019474	623.8141107032893	76.259	0.29472	76.299	76.231	76.526	0.03923					15	10	2	0	0	0	0.38315	1	18193	18193		8.1555	0.24537	1	254240			6413	7071	4307	4340	8749	8749					0.004608421743341751
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7902221679688	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.042	1	19.042	18.542	19.542	0								0	0	0	0.29233	1	1266	1266		0.6015	0.076735	1				6414	1946	4308	4341	8750	8750					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7898559570312	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.444	1	19.444	18.944	19.944	0								0	0	0	0.29233	1	1361	1361		0.6015	0.076735	1				6415	1946	4308	4341	8751	8751					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.791015625	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.737	1	19.737	19.237	20.237	0								0	0	0	0.29233	1	1425	1425		0.6015	0.076735	1				6416	1946	4308	4341	8752	8752					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7892456054688	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.757	1	19.757	19.257	20.257	0								0	0	0	0.29233	1	1431	1431		0.6015	0.076735	1				6417	1946	4308	4341	8753	8753					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.790771484375	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.987	1	19.987	19.487	20.487	0								0	0	0	0.29233	1	1485	1485		0.6015	0.076735	1				6418	1946	4308	4341	8754	8754					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7885131835938	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.01	1	20.01	19.51	20.51	0								0	0	0	0.29233	1	1492	1492		0.6015	0.076735	1				6419	1946	4308	4341	8755	8755					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7886352539062	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.163	1	20.163	19.663	20.663	0								0	0	0	0.29233	1	1535	1535		0.6015	0.076735	1				6420	1946	4308	4341	8756	8756					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7890625	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.8	1	18.89	18.39	19.39	0.089705								0	0	0	0.29233	1	1127	1127		0.6015	0.076735	1				6421	1946	4308	4341	8757	8757					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7886352539062	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.205	1	19.3	18.8	19.8	0.095232								0	0	0	0.29233	1	1220	1220		0.6015	0.076735	1				6422	1946	4308	4341	8758	8758					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7902221679688	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.259	1	19.354	18.854	19.854	0.095232								0	0	0	0.29233	1	1234	1234		0.6015	0.076735	1				6423	1946	4308	4341	8759	8759					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7897338867188	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.831	1	19.927	19.427	20.427	0.095232								0	0	0	0.29233	1	1362	1362		0.6015	0.076735	1				6424	1946	4308	4341	8760	8760					-0.008472652797536284
HHQNVLFHH	9	Unmodified	_HHQNVLFHH_					0	0	0		PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7889404296875	2	584.791581	1167.56861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.118	1	20.213	19.713	20.713	0.095232								0	0	0	0.29233	1	1431	1431		0.6015	0.076735	1				6425	1946	4308	4341	8761	8761					-0.008472652797536284
HHRDAGLPA	9	Unmodified	_HHRDAGLPA_					0	0	0		ENST00000325222.8_1_7:148396099-148427112:+|nuORF	ENST00000325222.8_1_7:148396099-148427112:+|nuORF	ENST00000325222.8_1_7:148396099-148427112:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7399597167969	2	487.251757	972.488962	-0.30512	-0.00014867	-0.75041	-0.00036564	-1.0555	-0.00051431	487.2517023969529	29.531	0.23181	29.531	29.404	29.636	0					16	10	2	0	0	0	0.3354	1	4132	4132		2.0598	0	1	10023			6426	6041	4309	4342	8762	8762					0.001616680462802833
HHSHLIIT	8	Unmodified	_HHSHLIIT_					0	0	0			REV__ENST00000503921.5_1_5:96133011-96143586:-|nuORF	REV__ENST00000503921.5_1_5:96133011-96143586:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.26629638671875	2	479.266876	956.519199	-0.077857	-3.7314E-05	-1.1802	-0.00056564	-1.2581	-0.00060296	479.2662070119768	36.35	0.33722	36.35	36.155	36.492	0					23	12	2	0	0	0	0.53817	1	6229	6229		2.5775	0	1	40244	+		6427	9990	4310	4343	8763	8763					0.03920026711466562
HHTDLNPI	8	Unmodified	_HHTDLNPI_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.73980712890625	2	473.740691	945.466829	-0.10736	-5.0863E-05	-0.98783	-0.00046798	-1.0952	-0.00051884	473.74015057651627	48.668	0.617	48.744	48.439	49.056	0.076603					34	20	2	0	0	0	0.53494	1	9854	9854		4.756	0	1	93297			6428	1011	4311	4344	8764	8764					-0.008085564221460118
HHTDLNPI	8	Unmodified	_HHTDLNPI_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	473.740691	945.466829	-0.073206	-3.4681E-05	-1.2354	-0.00058528	-1.3087	-0.00061996	473.7400047483836	48.756	0.65949	48.756	48.399	49.059	0	0.005567	-0.00010748	NaN	4.756	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103450			6429	1011	4311	4344							-0.008085564221460118
HHTKANNK	8	Unmodified	_HHTKANNK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2424621582031	2	475.251757	948.488962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.308	1	25.308	24.808	25.808	0								0	0	0	0.38822	1	2938	2938		2.5775	0.27475	1				6430	5019	4312	4345	8765	8765					0.012656680462669101
HHVPALYR	8	Unmodified	_HHVPALYR_					0	0	0		ENST00000258821.7_1_14:20757539-20757656:-|nuORF	ENST00000258821.7_1_14:20757539-20757656:-|nuORF	ENST00000258821.7_1_14:20757539-20757656:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2460632324219	2	496.774868	991.535184	0.084752	4.2103E-05	-1.2924	-0.00064204	-1.2077	-0.00059994	496.774461449897	43.798	0.50498	43.887	43.741	44.246	0.088924					25	17	2	0	0	0	0.3576	1	8276	8276		0.79363	0	1	53684			6431	5855	4313	4346	8766	8766					0.03907732948357534
HHVPALYR	8	Unmodified	_HHVPALYR_					0	0	0		ENST00000258821.7_1_14:20757539-20757656:-|nuORF	ENST00000258821.7_1_14:20757539-20757656:-|nuORF	ENST00000258821.7_1_14:20757539-20757656:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	496.774868	991.535184	-0.021789	-1.0824E-05	-1.7227	-0.00085579	-1.7445	-0.00086661	496.77401805988876	43.888	0.52434	43.888	43.773	44.298	0	0.00093693	-0.00015949	NaN	0.79363	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34454			6432	5855	4313	4346							0.03907732948357534
HHWSPDYIM	9	Unmodified	_HHWSPDYIM_					0	0	0			REV__ENSG00000172301|ENST00000302362|COPRS	REV__ENSG00000172301|ENST00000302362|COPRS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.7442016601562	2	593.260933	1184.50731	0.62602	0.00037139	-1.6192	-0.00096061	-0.99318	-0.00058922	593.2598188910098	79.729	0.82529	79.729	79.372	80.197	0					43	28	2	0	0	0	0.24263	1	19422	19422		12.532	1.7076	1	166280	+		6433	10285	4314	4347	8767	8767					-0.07755958094048765
HHYTEPFR	8	Unmodified	_HHYTEPFR_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7420654296875	2	543.759415	1085.50428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.927	1	27.013	26.513	27.513	0.0867								0	0	0	0.38822	1	3271	3271		0.79363	0.10326	1		+		6434	9565	4315	4348	8768	8768					-0.03505465156558785
HIANMRFSLF	10	Unmodified	_HIANMRFSLF_					0	0	0			REV__ENST00000573177.1_1_18:3603669-3604008:+|nuORF	REV__ENST00000573177.1_1_18:3603669-3604008:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3214111328125	2	618.321325	1234.6281	-0.33145	-0.00020495	0.061765	3.8191E-05	-0.26969	-0.00016675	618.3213723666292	71.825	1.2935	71.825	71.53	72.824	0					182	45	5	0	0	0	0.42901	1	17192	17192		8.7454	0.83525	1	12727000	+		6435	12531	4316	4349	8769	8769					0.02016869619433237
HIDAAYAGTAF	11	Unmodified	_HIDAAYAGTAF_					0	0	0		nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000559816.1_1_15:50534459-50545113:-|nuORF	nc|ENSG00000140287|P19113-2|HDC	nc|ENSG00000140287|P19113-2|HDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7724609375	2	568.772188	1135.52982	0.14968	8.5135E-05	0.27273	0.00015512	0.42241	0.00024026	568.7723652694077	52.556	1.4549	52.556	52.305	53.76	0					159	55	3	0	0	0	0.33592	1	11148	11148		13.906	0	1	2688100			6436	3002	4317	4350	8770	8770					-0.03252035424770838
HIDHEIETL	9	Unmodified	_HIDHEIETL_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2029418945312	2	553.77747	1105.54039	0.45091	0.0002497	0.59238	0.00032805	1.0433	0.00057775	553.7780997058762	38.013	0.49129	38.013	37.783	38.274	0					27	16	2	0	0	0	0.24791	1	6652	6652		10.074	2.465	1	52157			6437	5235	4318	4351	8771	8771					-0.008160527703239495
HIDHEIETL	9	Unmodified	_HIDHEIETL_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7787475585938	2	553.77747	1105.54039	0.53086	0.00029398	0.3178	0.00017599	0.84866	0.00046997	553.7777798252557	37.822	0.51557	37.906	37.744	38.26	0.084476					29	18	2	0	0	0	0.23216	2	6508	6508;6562		14.838	3.3436	1	43293			6438	5235	4318	4351	8772;8773	8772					-0.008160527703239495
HIDTILHVL	9	Unmodified	_HIDTILHVL_					0	0	0		ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556741.5_1_14:24032738-24033292:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.811279296875	2	530.811116	1059.60768	0.0059234	3.1442E-06	-0.010304	-5.4692E-06	-0.0043801	-2.325E-06	530.8109581775361	58.985	0.80257	58.985	58.708	59.511	0					41	29	2	0	0	0	0.004452	2	13014	12987;13014		92.822	44.476	1	213300			6439	5561	4319	4352	8774;8775	8775					0.0802602223127451
HIDTILHVL	9	Unmodified	_HIDTILHVL_					0	0	0		ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556741.5_1_14:24032738-24033292:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8117065429688	2	530.811116	1059.60768	0.26703	0.00014174	-0.15833	-8.4043E-05	0.1087	5.7697E-05	530.8108260471697	58.871	0.87946	58.942	58.691	59.571	0.070477					50	33	2	0	0	0	0.082308	1	12856	12856		39.957	13.074	1	230900			6440	5561	4319	4352	8776	8776					0.0802602223127451
HIEESEHVL	9	Unmodified	_HIEESEHVL_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7696533203125	2	546.769645	1091.52474	-0.088567	-4.8426E-05	0.7283	0.00039821	0.63974	0.00034979	546.7697345927421	31.235	0.97579	31.235	31.001	31.977	0					99	44	3	0	0	0	0.092418	1	4688	4688		34.102	7.2188	1	151960			6441	4185	4320	4353	8777	8777					-0.017363392873676275
HIEESEHVL	9	Unmodified	_HIEESEHVL_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7695922851562	2	546.769645	1091.52474	-0.041674	-2.2786E-05	0.66832	0.00036542	0.62665	0.00034263	546.769713733457	31.21	0.90936	31.284	31.069	31.979	0.073782					106	44	4	0	0	0	0.12809	1	4551	4551		26.884	5.137	1	134370			6442	4185	4320	4353	8778	8778					-0.017363392873676275
HIFKHTTL	8	Unmodified	_HIFKHTTL_					0	0	0			REV__nc|ENSG00000160352|Q96N38-3|ZNF714	REV__nc|ENSG00000160352|Q96N38-3|ZNF714	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7718505859375	2	498.784902	995.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.51	1	47.593	47.093	48.093	0.083096								0	0	0	0.38652	1	9428	9428		16.942	0	1		+		6443	9849	4321	4354	8779	8779					0.05729483888330833
HIGGHPPFF	9	Unmodified	_HIGGHPPFF_					0	0	0			REV__ENSG00000189409|ENST00000356026|MMP23B	REV__ENSG00000189409|ENST00000356026|MMP23B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7564392089844	2	504.756144	1007.49774	0.59505	0.00030035	1.7602	0.00088848	2.3553	0.0011888	504.7568525635573	85.333	0.78323	85.356	85.035	85.818	0.023132					64	31	3	0	0	0	0.2796	1	20993	20993		9.3474	1.4373	1	173660	+		6444	10795	4322	4355	8780	8780					-0.0057135831724508535
HIIDDALVRL	10	Unmodified	_HIIDDALVRL_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8397216796875	2	582.840405	1163.66626	0.4346	0.0002533	-0.62123	-0.00036208	-0.18663	-0.00010877	582.8398462037965	59.578	1.1763	59.578	59.219	60.396	0					116	44	4	0	0	0	0.00070015	5	13208	13208;13256;13304;13332;13356		93.938	44.384	1	1091200			6445	1827	4323	4356	8781;8782;8783;8784;8785	8781					0.09097078805757519
HIIDDALVRL	10	Unmodified	_HIIDDALVRL_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.8401489257812	2	582.840405	1163.66626	0.45224	0.00026359	-0.62128	-0.00036211	-0.16904	-9.8524E-05	582.8398231508115	59.496	1.0092	59.568	59.356	60.366	0.072338					80	38	3	0	0	0	0.00070015	4	13082	13044;13082;13124;13174		93.938	44.384	1	1044600			6446	1827	4323	4356	8786;8787;8788;8789	8787					0.09097078805757519
HIIREYEVDE	10	Unmodified	_HIIREYEVDE_					0	0	0		tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.30352783203125	3	434.882337	1301.62518	0.13794	5.9988E-05	-0.36267	-0.00015772	-0.22473	-9.773E-05	434.882196304588	111.05	0.47972	111.07	110.95	111.43	0.015671					83	67	2	0	0	0	0.31852	1	28344	28344		0.69767	0.19171	1	1622000			6447	13486	4324	4357	8790	8790					-0.01356727024403881
HIIRYLVCIS	10	Unmodified	_HIIRYLVCIS_					0	0	0			REV__ENST00000507760.5_1_4:25363540-25366888:+|nuORF	REV__ENST00000507760.5_1_4:25363540-25366888:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.847900390625	2	608.847176	1215.6798	0.52572	0.00032008	0.41562	0.00025305	0.94134	0.00057313	608.8471988019393	88.125	1.03	88.155	87.458	88.488	0.030037					77	37	3	0	0	0	0.46608	1	21650	21650		1.4819	0	1	496890	+		6448	12234	4325	4358	8791	8791					0.08058613313346541
HIKIVDPFF	9	Unmodified	_HIKIVDPFF_					0	0	0			REV__nc|ENSG00000289746|P0CF51|TRGC1	REV__nc|ENSG00000289746|P0CF51|TRGC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2979125976562	2	558.316035	1114.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.977	1	69.977	69.477	70.477	0								0	0	0	0.19992	1	16399	16399		18.135	2.2878	1		+		6449	12919	4326	4359	8792	8792					0.06479210236648214
HIKKPMDFF	9	Unmodified	_HIKKPMDFF_					0	0	0		nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.8092651367188	2	581.807519	1161.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.78	1	35.859	35.359	36.359	0.078827								0	0	0	0.2927	1	5901	5901		0.52476	0.17413	1				6450	3643	4327	4360	8793	8793					0.02614966359215032
HIKVGLFFFD	10	Unmodified	_HIKVGLFFFD_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.7579956054688	2	611.834591	1221.65463	0.2341	0.00014323	-3.6103	-0.0022089	-3.3762	-0.0020657	611.8320007233899	61.266	0.25064	61.266	61.11	61.361	0					14	8	2	0	0	0	0.31712	1	13700	13700		6.7232	1.4263	1	64955	+		6451	12251	4328	4361	8794	8794					0.052668817824269354
HIKVVTEVT	9	Unmodified	_HIKVVTEVT_					0	0	0			REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.285400390625	2	513.303124	1024.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.551	1	57.619	57.119	58.119	0.068375								0	0	0	0.25992	1	12478	12478		7.2892	0	1		+		6452	8429	4329	4362	8795	8795					0.0803831599437217
HILQTVVPDE	10	Unmodified	_HILQTVVPDE_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7929077148438	2	575.808771	1149.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.17	1	75.214	74.714	75.714	0.044037								0	0	0	0.32971	1	17828	17828		12.241	0.60036	1				6453	6877	4330	4363	8796	8796					0.03417093297844076
HILSNCELVKK	11	Unmodified	_HILSNCELVKK_					0	0	0		nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-7|PXK	nc|ENSG00000168297|Q7Z7A4-7|PXK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.36083984375	2	642.360647	1282.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.54	1	108.56	108.06	109.06	0.019402								0	0	0	0.33362	1	27775	27775		2.9952	0.26005	1				6454	4275	4331	4364	8797	8797					0.07669677133822006
HILVFLFYI	9	Unmodified	_HILVFLFYI_					0	0	0		ENST00000447202.2_1_Y:21749110-21749530:+|nuORF	ENST00000447202.2_1_Y:21749110-21749530:+|nuORF	ENST00000447202.2_1_Y:21749110-21749530:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7699584960938	2	582.844428	1163.6743	0.62167	0.00036234	0.82002	0.00047794	1.4417	0.00084028	582.8467497483479	60.399	0.33436	60.399	60.282	60.617	0					15	11	2	0	0	0	0.24749	1	13540	13540		9.3474	0.75416	1	105010			6455	6548	4332	4365	8798	8798					0.09901257793194418
HINHDDPSL	9	Unmodified	_HINHDDPSL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2462158203125	2	524.246338	1046.47812	-0.21762	-0.00011409	-0.39682	-0.00020803	-0.61445	-0.00032212	524.2461306332737	25.467	0.95326	25.467	25.271	26.224	0					136	73	3	0	0	0	0.048027	3	2957	2957;2993;3029		43.772	25.626	1	164910			6456	971	4333	4366	8799;8800;8801	8799					-0.04325779118653372
HINHDDPSL	9	Unmodified	_HINHDDPSL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2460327148438	2	524.246338	1046.47812	-0.1551	-8.1312E-05	-0.39566	-0.00020742	-0.55076	-0.00028873	524.2461362944894	25.306	0.53545	25.402	25.226	25.762	0.096075					130	44	4	0	0	0	0.015341	2	2822	2788;2822		61.602	32.52	1	186380			6457	971	4333	4366	8802;8803	8803					-0.04325779118653372
HINLMKTSDSY	11	Unmodified	_HINLMKTSDSY_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.21484375	3	436.879939	1307.61799	0.52654	0.00023003	-0.40873	-0.00017857	0.11781	5.1467E-05	437.2143325219897	100.33	1.9876	100.33	99.828	101.82	0					199	118	2	0	0	0	0.41309	1	25602	25602		1.3296	0.63198	1	185550			6458	3508	4334	4367	8804	8804					-0.023517828964486398
HIPLWLRP	8	Unmodified	_HIPLWLRP_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3031616210938	2	516.311087	1030.60762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.651	1	40.651	40.151	41.151	0								0	0	0	0.38822	1	7488	7488		2.5775	1.7838	1		+		6459	10139	4335	4368	8805	8805					0.09354067021922674
HIPPPRLN	8	Unmodified	_HIPPPRLN_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|55|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|55|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|55|2|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.28753662109375	2	472.277244	942.539935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.713	1	89.747	89.247	90.247	0.034065								0	0	0	0.38822	1	22257	22257		2.5775	0.27475	1				6460	7398	4336	4369	8806	8806					0.06636617091135122
HIPSYITMDSN	11	Unmodified	_HIPSYITMDSN_					0	0	0		sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.295166015625	2	639.29517	1276.57579	-0.18141	-0.00011598	0.58858	0.00037627	0.40716	0.0002603	639.2955984737546	28.382	0.61912	28.464	28.232	28.852	0.082134					86	34	3	0	0	0	0.41693	1	3768	3768		0.30703	0	1	128930			6461	13388	4337	4370	8807	8807					-0.05143758304802759
HIQENEVL	8	Unmodified	_HIQENEVL_					0	0	0			REV__tr|U7SSY7|U7SSY7_FUSNUHeptose(II)phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01643PE=4SV=1	REV__tr|U7SSY7|U7SSY7_FUSNUHeptose(II)phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01643PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2539978027344	2	491.253631	980.49271	0.040371	1.9833E-05	0.39614	0.0001946	0.43651	0.00021444	491.2536648499683	45.644	0.42884	45.729	45.525	45.954	0.085617					32	16	3	0	0	0	0.51415	1	8867	8867		10.824	0.75	1	90728	+		6462	13160	4338	4371	8808	8808					0.0016829302946916869
HIQHSSSTV	9	Unmodified	_HIQHSSSTV_					0	0	0			REV__ENST00000425692.6_1_17:16721458-16722262:-|nuORF	REV__ENST00000425692.6_1_17:16721458-16722262:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7506408691406	2	498.24888	994.483208	0.00084068	4.1887E-07	0.11638	5.7985E-05	0.11722	5.8404E-05	498.2488938509045	25.571	0.41854	25.662	25.455	25.873	0.091507					49	34	2	0	0	0	0.33849	1	2864	2864		1.6526	0.17072	1	24155	+		6463	11802	4339	4372	8809	8809					-0.01425475256030495
HISMGYKM	8	Unmodified	_HISMGYKM_					0	0	0		ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53112313-53114116:+|nuORF;TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant;ENSG00000184205|ENST00000375442|TSPYL2	ENST00000553557.5_1_X:53113753-53114504:+|nuORF	ENST00000553557.5_1_X:53113753-53114504:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.731689453125	2	483.730423	965.446293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.345	1	23.345	22.845	23.845	0								0	0	0	0.38822	1	2381	2381		2.0598	0.21551	1				6464	4963	4340	4373	8810	8810					-0.03781186397804959
HIVAFAIYYI	10	Unmodified	_HIVAFAIYYI_					0	0	0		ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.894775390625	3	403.893737	1208.65938	0.063765	2.5754E-05	2.0741	0.00083772	2.1379	0.00086348	403.89481748075195	28.543	0.47831	28.543	28.362	28.84	0					32	22	2	0	0	0	0.31851	1	3891	3891		0.77653	0.078866	1	24282			6465	5312	4341	4374	8811	8811					0.0633976592516774
HIYPYFSKN	9	Unmodified	_HIYPYFSKN_					0	0	0			REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8053588867188	2	584.792924	1167.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.377	1	73.43	72.93	73.93	0.052574								0	0	0	0.19992	1	17283	17283		18.135	0	1		+		6466	8373	4342	4375	8812	8812					-0.005788546654230231
HKALQFEIK	9	Unmodified	_HKALQFEIK_					0	0	0			REV__ENST00000422642.6_2_10:30987145-31001569:+|nuORF	REV__ENST00000422642.6_2_10:30987145-31001569:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3258056640625	2	557.324391	1112.63423	0.49847	0.00027781	2.4663	0.0013745	2.9648	0.0016523	557.3259412450501	101.17	0.4977	101.17	100.91	101.4	0					49	27	3	0	0	0	0.33978	1	25906	25906		1.4819	0.28856	1	58523	+		6467	11816	4343	4376	8813	8813					0.08241711122605011
HKCQLFYWY	9	Unmodified	_HKCQLFYWY_					0	0	0			REV__ENST00000485746.1_1_7:99030561-99032532:-|nuORF	REV__ENST00000485746.1_1_7:99030561-99032532:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3048095703125	2	644.302601	1286.59065	-0.18895	-0.00012174	1.8266	0.0011769	1.6376	0.0010551	644.3038677414937	26.489	0.24127	26.581	26.435	26.677	0.091507					35	17	3	0	0	0	0.3354	1	3136	3136		2.0598	0.40713	1	31076	+		6468	8571	4344	4377	8814	8814					-0.0411822164617206
HKDRYYKY	8	Unmodified	_HKDRYYKY_					0	0	0			REV__ENSG00000147596|ENST00000276594|PRDM14	REV__ENSG00000147596|ENST00000276594|PRDM14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.79443359375	2	586.795998	1171.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.133	1	32.207	31.707	32.707	0.07378								0	0	0	0.38822	1	4809	4809		0.69038	0	1		+		6469	9574	4345	4378	8815	8815					-0.0014833643390375073
HKEAEDNPIQK	11	Unmodified	_HKEAEDNPIQK_					0	0	0			REV__tr|U7SJL8|U7SJL8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02102PE=4SV=1	REV__tr|U7SJL8|U7SJL8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02102PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.54608154296875	3	436.889603	1307.64698	0.12095	5.2841E-05	3.5114	0.0015341	3.6323	0.0015869	437.2255111670966	36.931	0.14686	37.013	36.896	37.043	0.081715					7	5	2	0	0	0	0.31072	1	6229	6229		4.7159	1.1289	1	18566	+		6470	13067	4346	4379	8816	8816					0.005460777241751202
HKELEFHR	8	Unmodified	_HKELEFHR_					0	0	0			REV__ENSG00000165030|ENST00000297689|NFIL3	REV__ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.28759765625	2	548.28834	1094.56213	-0.33773	-0.00018517	-0.67207	-0.00036849	-1.0098	-0.00055366	548.2879820498928	15.642	0.15523	15.642	15.54	15.695	0					29	19	2	0	0	0	0.5411	1	573	573		0.6015	0	1	11996	+		6471	10019	4347	4380	8817	8817					0.01862796768887165
HKGQYRAV	8	Unmodified	_HKGQYRAV_					0	0	0		nc|ENSG00000112763|Q7KYR7-3|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000112763|Q7KYR7-3|BTN2A1	nc|ENSG00000112763|Q7KYR7-3|BTN2A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7638244628906	2	479.764501	957.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.768	1	26.768	26.268	27.268	0								0	0	0	0.38822	1	3354	3354		0.69038	0	1				6472	1776	4348	4381	8818	8818					0.03399142568696334
HKGSVGRLPR	10	Unmodified	_HKGSVGRLPR_					0	0	0			REV__nc|ENSG00000165072|Q7Z304-2|MAMDC2	REV__nc|ENSG00000165072|Q7Z304-2|MAMDC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8309936523438	2	553.830706	1105.64686	0.76437	0.00042333	-1.5234	-0.00084371	-0.75903	-0.00042037	553.8298189340439	97.318	0.51802	97.359	97.096	97.614	0.040855					39	24	2	0	0	0	0.46827	1	24563	24563		1.3295	0.63916	1	73579	+		6473	10020	4349	4382	8819	8819					0.09826167305504896
HKHHHRRRK	9	Unmodified	_HKHHHRRRK_					0	0	0		ENST00000428005.1_1_3:27465485-27525617:-|nuORF;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	ENST00000428005.1_1_3:27465485-27525617:-|nuORF	ENST00000428005.1_1_3:27465485-27525617:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.0441284179688	2	646.377012	1290.73947	0.10624	6.8674E-05	-2.4786	-0.0016021	-2.3724	-0.0015334	646.8765260530776	49.83	0.16506	49.904	49.842	50.007	0.07312					6	5	2	0	0	0	0.25989	1	10123	10123		0.52476	0.066424	1	46683			6474	511	4350	4383	8820	8820					0.10573109882238896
HKIFMKRRVVE	11	Unmodified	_HKIFMKRRVVE_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.28338623046875	3	481.618612	1441.83401	0.0098538	4.7458E-06	-1.6531	-0.00079616	-1.6432	-0.00079141	481.6178364428566	95.667	0.37012	95.706	95.634	96.004	0.038872					25	16	3	0	0	0	0.31101	1	24076	24076		0.40827	0.31342	1	109900	+		6475	8002	4351	4384	8821	8821					0.13076442798683274
HKIFMKRRVVE	11	Unmodified	_HKIFMKRRVVE_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	481.618612	1441.83401	0.0027052	1.3029E-06	-1.5135	-0.00072894	-1.5108	-0.00072764	481.6178737723882	95.729	0.45351	95.729	95.575	96.028	0	0.011377	6.4846E-05	NaN	0.40827	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133370	+		6476	8002	4351	4384							0.13076442798683274
HKKAFTQGCL	10	Unmodified	_HKKAFTQGCL_					0	0	0			REV__ENSG00000198205|ENST00000358697|ZXDA	REV__ENSG00000198205|ENST00000358697|ZXDA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7992553710938	2	566.800226	1131.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.7	1	103.74	103.24	104.24	0.03791								0	0	0	0.33892	1	26494	26494		1.4819	0.15237	1		+		6477	10889	4352	4385	8822	8822					0.025368942110617354
HKKCSTQEFF	10	Unmodified	_HKKCSTQEFF_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.31561279296875	3	418.869374	1253.58629	0.11715	4.9068E-05	-0.75845	-0.00031769	-0.6413	-0.00026862	418.86914836692864	37.306	0.82242	37.39	37.162	37.984	0.08448					45	28	3	0	0	0	0.31851	1	6498	6498		0.77653	0	1	53253			6478	1794	4353	4386	8823	8823					-0.030357308597558585
HKKCSTQEFF	10	Unmodified	_HKKCSTQEFF_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	418.869374	1253.58629	0.45921	0.00019235	-0.64825	-0.00027153	-0.18904	-7.9182E-05	418.869235938903	37.414	0.58732	37.414	37.25	37.837	0	0.012219	9.5642E-05	NaN	0.77653	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39484			6479	1794	4353	4386							-0.030357308597558585
HKLPTFLF	8	Unmodified	_HKLPTFLF_					0	0	0		ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2906188964844	2	501.792195	1001.56984	0.26809	0.00013453	-0.10709	-5.3736E-05	0.16101	8.0792E-05	501.7921998950072	77.927	0.6711	77.927	77.634	78.305	0					31	22	2	0	0	0	0.3576	1	18862	18862		2.5775	0	1	124380			6480	2022	4354	4387	8824	8824					0.06911556036459388
HKLPTFLF	8	Unmodified	_HKLPTFLF_					0	0	0		ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.29010009765625	2	501.792195	1001.56984	0.58209	0.00029209	-0.26663	-0.00013379	0.31545	0.00015829	501.79212964611304	79.584	0.67941	79.584	79.372	80.051	0					37	23	2	0	0	0	0.35759	1	19329	19329		10.183	0	1	138560			6481	2022	4354	4387	8825	8825					0.06911556036459388
HKNCYCESF	9	Unmodified	_HKNCYCESF_					0	0	0		ENSG00000164619|ENST00000649409|BMPER	ENSG00000164619|ENST00000649409|BMPER	ENSG00000164619|ENST00000649409|BMPER	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7237548828125	2	565.723326	1129.4321	0.30413	0.00017205	0.49089	0.00027771	0.79502	0.00044976	565.7235741067531	76.2	1.1383	76.2	75.948	77.086	0					100	52	2	0	0	0	0.3182	1	18471	18471		4.3292	1.7518	1	2379700			6482	4023	4355	4388	8826	8826					-0.12743883616781204
HKNLSWGGL	9	Unmodified	_HKNLSWGGL_					0	0	0			REV__ENSG00000009694|ENST00000371130|TENM1	REV__ENSG00000009694|ENST00000371130|TENM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2340393066406	2	506.272158	1010.52976	0.14355	7.2673E-05	-1.5037	-0.00076131	-1.3602	-0.00068863	506.27136835000863	58.405	0.23928	58.475	58.322	58.561	0.070477					10	8	2	0	0	0	0.25376	1	12755	12755		6.2058	3.903	1	52075	+		6483	7967	4356	4389	8827	8827					0.024920093659034137
HKRSHQRLF	9	Unmodified	_HKRSHQRLF_					0	0	0		nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.89892578125	3	403.563496	1207.66866	0.95303	0.00038461	1.0541	0.00042538	2.0071	0.00080999	403.56400919772364	66.147	0.67091	66.147	65.936	66.607	0					48	24	3	0	0	0	0.27266	1	15253	15253		10.151	10.151	1	145160			6484	3537	4357	4390	8828	8828					0.07312972054069178
HKSCLKKA	8	Unmodified	_HKSCLKKA_					0	0	0			REV__ENSG00000054219|ENST00000263636|LY75	REV__ENSG00000054219|ENST00000263636|LY75	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2641906738281	2	457.765655	913.516756	0.33847	0.00015494	0.4946	0.00022641	0.83306	0.00038135	457.7659251666136	77.349	1.4531	77.383	77.263	78.716	0.034485					84	54	2	0	0	0	0.3576	1	18769	18769		7.9102	3.1541	1	437980	+		6485	8062	4358	4391	8829	8829					0.05653854982142548
HKTETVHTW	9	Unmodified	_HKTETVHTW_					0	0	0		ENST00000527003.5_1_11:93475275-93480508:+|nuORF	ENST00000527003.5_1_11:93475275-93480508:+|nuORF	ENST00000527003.5_1_11:93475275-93480508:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7536010742188	2	569.78563	1137.55671	-0.043187	-2.4607E-05	-1.3366	-0.00076155	-1.3797	-0.00078615	569.7849526371934	40.013	0.37856	40.102	39.905	40.284	0.088562					20	14	2	0	0	0	0.25875	1	7140	7140		1.8442	0.19162	1	53924			6486	6999	4359	4392	8830	8830					-0.0065692681357631955
HKYDSVRTY	9	Unmodified	_HKYDSVRTY_					0	0	0			REV__nc|ENSG00000141934|O43688-3|PLPP2	REV__nc|ENSG00000141934|O43688-3|PLPP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7886962890625	2	584.790912	1167.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.97	1	16.97	16.47	17.47	0								0	0	0	0.28631	1	830	830		1.8442	0	1		+		6487	9417	4360	4393	8831	8831					-0.009809441591414725
HLALSVFWI	9	Unmodified	_HLALSVFWI_					0	0	0		chr11:1761468-1771391|129|79.24|0.0|22.92|-|2|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|4	chr11:1761468-1771391|129|79.24|0.0|22.92|-|2|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|4	chr11:1761468-1771391|129|79.24|0.0|22.92|-|2|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7830810546875	2	543.310752	1084.60695	0.41657	0.00022633	-4.472	-0.0024297	-4.0554	-0.0022034	543.3087463083527	47.112	0.36922	47.195	47.007	47.376	0.083096					24	13	2	0	0	0	0.22289	1	9295	9295		18.135	0	1	104710			6488	143	4361	4394	8832	8832					0.06803227582213367
HLAPLWPFL	9	Unmodified	_HLAPLWPFL_					0	0	0		ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN	ENST00000565325.5_1_15:73854253-73925580:-|nuORF	ENST00000565325.5_1_15:73854253-73925580:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7696533203125	2	547.313295	1092.61204	-0.032387	-1.7726E-05	-3.1273	-0.0017116	-3.1597	-0.0017293	547.3092653539079	31.117	0.23833	31.191	31.046	31.284	0.073782					19	12	2	0	0	0	0.25416	1	4511	4511		5.2307	0.47466	1	19588			6489	3631	4362	4395	8833	8833					0.06943531444835571
HLDLASCTSIT	11	Unmodified	_HLDLASCTSIT_					0	0	0		ENSG00000108306|ENST00000264658|FBXL20	ENSG00000108306|ENST00000264658|FBXL20	ENSG00000108306|ENST00000264658|FBXL20	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.78466796875	2	580.784438	1159.55432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.97	1	105.97	105.47	106.47	0								0	0	0	0.33362	1	27312	27312		2.9952	1.3426	1				6490	1584	4363	4396	8834	8834					-0.019071433335511756
HLECLRHNNE	10	Unmodified	_HLECLRHNNE_					0	0	0			REV__ENST00000592367.5_3_6:170154087-170155405:+|nuORF	REV__ENST00000592367.5_3_6:170154087-170155405:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1987609863281	3	422.199894	1263.57785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.098	1	84.12	83.62	84.62	0.021744								0	0	0	0.3384	1	20550	20550		2.086	0.89267	1		+		6491	12588	4364	4397	8835	8835					-0.04339284776369823
HLESDAFLV	9	Unmodified	_HLESDAFLV_					0	0	0		nc|ENSG00000185515|P46736-5|BRCC3;ENSG00000185515|ENST00000330045|BRCC3;nc|ENSG00000185515|P46736-3|BRCC3;nc|ENSG00000185515|P46736|BRCC3	nc|ENSG00000185515|P46736-5|BRCC3	nc|ENSG00000185515|P46736-5|BRCC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.763427734375	2	515.763832	1029.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.006	1	45.006	44.506	45.506	0								0	0	0	0.23884	1	8804	8804		11.64	3.7301	1				6492	5028	4365	4398	8836	8836					-0.00046536310719602625
HLFGARWK	8	Unmodified	_HLFGARWK_					0	0	0			REV__ENST00000540479.5_1_15:68486446-68491940:-|nuORF	REV__ENST00000540479.5_1_15:68486446-68491940:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7846374511719	2	507.785236	1013.55592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.48	1	101.48	100.98	101.98	0								0	0	0	0.38822	1	25995	25995		2.5775	0	1		+		6493	12399	4366	4399	8837	8837					0.04968323328034785
HLFMWWNKMVQ	11	Unmodified	_HLFMWWNKMVQ_					0	0	0			REV__chr12:77034042-77043065|475|16.38|0.51|5.0|-|0|E2F7,E2F7|1	REV__chr12:77034042-77043065|475|16.38|0.51|5.0|-|0|E2F7,E2F7|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7567138671875	3	507.24942	1518.72643	0.14835	7.525E-05	0.58593	0.00029721	0.73428	0.00037246	507.2492530299431	36.113	0.12325	36.195	36.112	36.235	0.081715					5	4	2	0	0	0	0.31101	1	5994	5994		0.094841	0	1	6835.2	+		6494	7785	4367	4400	8838	8838					-0.012182701270376128
HLGDFLVF	8	Unmodified	_HLGDFLVF_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2525939941406	2	474.252903	946.491253	0.075806	3.5951E-05	0.28582	0.00013555	0.36163	0.0001715	474.2528968226989	74.368	0.59599	74.368	74.171	74.767	0					33	21	2	0	0	0	0.49441	1	17734	17734		13.508	1.8676	1	110850			6495	1385	4368	4401	8839	8839					0.015867037313796573
HLGDFLVF	8	Unmodified	_HLGDFLVF_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	474.252903	946.491253	0.13726	6.5095E-05	0.2326	0.00011031	0.36985	0.0001754	474.25296612478667	74.378	0.47081	74.427	74.203	74.673	0.048546	0.029429	-3.7303E-05	NaN	13.508	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78836			6496	1385	4368	4401							0.015867037313796573
HLGGKEYTL	9	Unmodified	_HLGGKEYTL_					0	0	0		nc|ENSG00000143839|P00797-2|REN;ENSG00000143839|ENST00000272190|REN	nc|ENSG00000143839|P00797-2|REN	nc|ENSG00000143839|P00797-2|REN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.27191162109375	2	509.271824	1016.5291	-0.13067	-6.6547E-05	-0.5945	-0.00030276	-0.72517	-0.00036931	509.27139854960336	29.024	0.7233	29.103	28.903	29.626	0.078289					85	46	2	0	0	0	0.17428	1	3856	3856		21.537	6.6987	1	176750			6497	3186	4369	4402	8840	8840					0.021491699262014663
HLGGKEYTL	9	Unmodified	_HLGGKEYTL_					0	0	0		nc|ENSG00000143839|P00797-2|REN;ENSG00000143839|ENST00000272190|REN	nc|ENSG00000143839|P00797-2|REN	nc|ENSG00000143839|P00797-2|REN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	509.271824	1016.5291	-0.1703	-8.6731E-05	-0.89305	-0.00045481	-1.0634	-0.00054154	509.27119773670546	29.089	0.76311	29.089	28.915	29.678	0	-0.0069029	-0.00017742	NaN	21.537	83	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141060			6498	3186	4369	4402							0.021491699262014663
HLHHFCGP	8	Unmodified	_HLHHFCGP_					0	0	0			REV__ENST00000482536.5_1_6:26384030-26390413:+|nuORF	REV__ENST00000482536.5_1_6:26384030-26390413:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.06353759765625	2	474.218872	946.42319	-0.062224	-2.9508E-05	-3.9526	-0.0018744	-4.0148	-0.0019039	474.2164985872496	36.47	0.61158	36.552	36.259	36.87	0.081711					36	25	2	0	0	0	0.3576	1	6029	6029		0.79363	0.10326	1	72414	+		6499	12102	4370	4403	8841	8841					-0.052164444002642085
HLHLLVPRKLM	11	Unmodified	_HLHLLVPRKLM_					0	0	0			REV__STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant	REV__STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.9482727050781	3	452.94807	1355.82238	0.28012	0.00012688	0.55593	0.00025181	0.83605	0.00037869	452.94815530431157	104.02	0.69669	104.02	103.73	104.42	0					171	68	4	0	0	0	0.41693	1	26790	26790		0.45452	0.45452	1	454110	+		6500	9999	4371	4404	8842	8842					0.158702457753634
HLHLLVPRKLM	11	Unmodified	_HLHLLVPRKLM_					0	0	0			REV__STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant	REV__STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	452.94807	1355.82238	0.26785	0.00012132	0.57478	0.00026035	0.84263	0.00038167	452.9482152857877	103.96	0.74674	104	103.75	104.5	0.037903	-0.013477	1.0559E-05	NaN	0.45452	191	71	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304520	+		6501	9999	4371	4404							0.158702457753634
HLIVNNNQL	9	Unmodified	_HLIVNNNQL_					0	0	0		ENSG00000156564|ENST00000338305|LRFN2	ENSG00000156564|ENST00000338305|LRFN2	ENSG00000156564|ENST00000338305|LRFN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7958984375	2	532.795998	1063.57744	0.40875	0.00021778	0.58776	0.00031316	0.99651	0.00053094	532.7962674299374	36.886	0.36925	36.967	36.813	37.182	0.081711					26	14	3	0	0	0	0.32112	1	6237	6237		3.9444	0	1	42745			6502	3627	4372	4405	8843	8843					0.048196635660815446
HLIVNNNQL	9	Unmodified	_HLIVNNNQL_					0	0	0		ENSG00000156564|ENST00000338305|LRFN2	ENSG00000156564|ENST00000338305|LRFN2	ENSG00000156564|ENST00000338305|LRFN2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.795998	1063.57744	0.27835	0.0001483	0.052455	2.7948E-05	0.3308	0.00017625	532.7958750010351	37.013	0.41252	37.013	36.806	37.219	0	0.02295	-0.00019393	NaN	3.9444	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28162			6503	3627	4372	4405							0.048196635660815446
HLKEAQAR	8	Unmodified	_HLKEAQAR_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.769775390625	2	476.769783	951.525013	-0.25784	-0.00012293	0.61363	0.00029256	0.35578	0.00016963	476.7701003262091	22.996	0.19009	23.098	22.989	23.179	0.10178					24	16	2	0	0	0	0.50815	1	2176	2176		11.64	0.81637	1	26728			6504	3305	4373	4406	8844	8844					0.047311252231338585
HLKEAQAR	8	Unmodified	_HLKEAQAR_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	476.769783	951.525013	-0.507	-0.00024172	0.92216	0.00043966	0.41516	0.00019794	476.7703468862332	23.245	0.19447	23.245	23.103	23.298	0	0.073198	0.00018136	NaN	11.64	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25537			6505	3305	4373	4406							0.047311252231338585
HLLHQWGRR	9	Unmodified	_HLLHQWGRR_					0	0	0			REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF	REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8363647460938	2	601.836323	1201.65809	0.31013	0.00018664	-0.19256	-0.00011589	0.11756	7.0754E-05	601.8361859562045	89.444	0.81176	89.476	89.273	90.085	0.032257					72	30	4	0	0	0	0.28587	1	22229	22229		8.5933	0	1	1623100	+		6506	12601	4374	4407	8845	8845					0.06532989399647704
HLPLPAHAALL	11	Unmodified	_HLPLPAHAALL_					0	0	0		ENST00000497691.5_1_6:3273291-3410459:-|nuORF	ENST00000497691.5_1_6:3273291-3410459:-|nuORF	ENST00000497691.5_1_6:3273291-3410459:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.8477172851562	2	576.848033	1151.68151	0.15543	8.9657E-05	-0.79682	-0.00045965	-0.6414	-0.00036999	576.8475085390472	104.36	0.64488	104.36	104	104.64	0					87	60	3	0	0	0	0.38944	1	26852	26852		6.7232	0	1	203410			6507	6847	4375	4408	8846	8846					0.11173990393581335
HLPPCHEAL	9	Unmodified	_HLPPCHEAL_					0	0	0			REV__ENST00000468473.1_1_11:1861614-1861937:+|nuORF	REV__ENST00000468473.1_1_11:1861614-1861937:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7605895996094	2	508.752744	1015.49094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.758	1	76.797	76.297	77.297	0.03923								0	0	0	0.23884	1	18316	18316		11.64	0.81637	1		+		6508	9060	4376	4409	8847	8847					-0.016190392601288295
HLPPCHEAL	9	Unmodified	_HLPPCHEAL_					0	0	0			REV__ENST00000468473.1_1_11:1861614-1861937:+|nuORF	REV__ENST00000468473.1_1_11:1861614-1861937:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2840881347656	2	508.752744	1015.49094	0.34119	0.00017358	-2.8774	-0.0014639	-2.5362	-0.0012903	508.75120215344606	76.552	0.25981	76.591	76.498	76.758	0.03923					13	9	2	0	0	0	0.2298	1	18304	18304		16.942	1.0951	1	93891	+		6509	9060	4376	4409	8848	8848					-0.016190392601288295
HLPVADPR	8	Unmodified	_HLPVADPR_					0	0	0		ENST00000570769.5_1_16:3707099-3707303:+|nuORF	ENST00000570769.5_1_16:3707099-3707303:+|nuORF	ENST00000570769.5_1_16:3707099-3707303:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.75299072265625	2	452.753601	903.49265	-0.052029	-2.3557E-05	-0.75647	-0.00034249	-0.8085	-0.00036605	452.75316148642867	26.595	0.48914	26.595	26.401	26.891	0					51	32	2	0	0	0	0.53926	1	3326	3326		1.8442	1.0506	1	41963			6510	7195	4377	4410	8849	8849					0.03704337820136061
HLQLMWKHFLK	11	Unmodified	_HLQLMWKHFLK_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.61297607421875	3	494.279708	1479.8173	0.068574	3.3895E-05	-0.70354	-0.00034775	-0.63497	-0.00031385	494.2793885080034	114.17	0.33228	114.17	113.97	114.3	0					76	47	2	0	0	0	0.31101	1	29153	29153		0.094841	0.011491	1	43073	+		6511	8800	4378	4411	8850	8850					0.09657941912746537
HLSAKANN	8	Unmodified	_HLSAKANN_					0	0	0		nc|ENSG00000144395|Q8NCX0-3|CCDC150;ENST00000494389.5_1_2:197559796-197594150:+|nuORF;nc|ENSG00000144395|Q8NCX0-2|CCDC150;ENSG00000144395|ENST00000389175|CCDC150	nc|ENSG00000144395|Q8NCX0-3|CCDC150	nc|ENSG00000144395|Q8NCX0-3|CCDC150	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.2251281738281	2	427.727584	853.440614	0.6295	0.00026926	-0.81337	-0.0003479	-0.18387	-7.8645E-05	427.727134142597	99.714	0.054581	99.714	99.688	99.743	0					4	2	2	0	0	0	0.3576	1	25465	25465		0.6015	0	1	94189			6512	3206	4379	4412	8851	8851					0.008031744063714541
HLSHTTHF	8	Unmodified	_HLSHTTHF_					0	0	0		nc|ENSG00000179029|Q6UX40-2|TMEM107	nc|ENSG00000179029|Q6UX40-2|TMEM107	nc|ENSG00000179029|Q6UX40-2|TMEM107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.24114990234375	2	490.240858	978.467164	-0.21114	-0.00010351	0.34629	0.00016976	0.13515	6.6256E-05	490.2410860220958	26.962	0.45659	26.962	26.797	27.254	0					46	30	2	0	0	0	0.53858	1	3417	3417		2.3027	0	1	22557			6513	7564	4380	4413	8852	8852					-0.022931367022806626
HLSVQNPD	8	Unmodified	_HLSVQNPD_					0	0	0			REV__nc|ENSG00000141298|Q76I76|SSH2	REV__nc|ENSG00000141298|Q76I76|SSH2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.226806640625	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.676	1	93.714	93.214	94.214	0.037369								0	0	0	0.38822	1	23463	23463		2.5775	0	1		+		6514	9392	4381	4414	8853	8853					-0.022685491760853438
HLTFYTDLL	9	Unmodified	_HLTFYTDLL_					0	0	0			REV__ENSG00000198382|ENST00000356136|UVRAG	REV__ENSG00000198382|ENST00000356136|UVRAG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.795166015625	2	561.795132	1121.57571	0.62427	0.00035071	0.06042	3.3944E-05	0.68469	0.00038465	561.795070282187	92.726	1.0531	92.726	92.431	93.485	0					118	40	6	0	0	0	0.29576	1	23465	23465		7.2892	0	1	3963100	+		6515	10895	4382	4415	8854	8854					0.019786097574751693
HLTGYEVL	8	Unmodified	_HLTGYEVL_					0	0	0			REV__nc|ENSG00000113327|P18507-1|GABRG2	REV__nc|ENSG00000113327|P18507-1|GABRG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7772216796875	2	466.247818	930.481082	0.20481	9.5491E-05	-0.28633	-0.0001335	-0.081525	-3.8011E-05	466.24762032049216	74.487	0.33268	74.536	74.369	74.701	0.048546					17	11	2	0	0	0	0.3576	1	17640	17640		4.3292	0	1	72521	+		6516	8739	4383	4416	8855	8855					0.013060960061352489
HLTLEFLE	8	Unmodified	_HLTLEFLE_					0	0	0		ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.25274658203125	2	501.26875	1000.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.044	1	95.044	94.544	95.544	0								0	0	0	0.38822	1	24038	24038		8.5933	2.8329	1				6517	5247	4384	4417	8856	8856					0.022706516946641386
HLVPETAVV	9	Unmodified	_HLVPETAVV_					0	0	0			REV__nc|ENSG00000181109|Q8NH57|OR52P1	REV__nc|ENSG00000181109|Q8NH57|OR52P1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2666015625	2	482.776742	963.538931	-0.097488	-4.7065E-05	0.49577	0.00023935	0.39828	0.00019228	482.7768417619437	51.661	0.95041	51.661	51.269	52.219	0					62	32	3	0	0	0	0.22289	1	10750	10750		18.135	5.6034	1	147920	+		6518	12857	4385	4418	8857	8857					0.05570357931571834
HLVPETAVV	9	Unmodified	_HLVPETAVV_					0	0	0			REV__nc|ENSG00000181109|Q8NH57|OR52P1	REV__nc|ENSG00000181109|Q8NH57|OR52P1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2666015625	2	482.776742	963.538931	0.0066774	3.2237E-06	0.28966	0.00013984	0.29634	0.00014306	482.7768284299712	51.445	1.0353	51.515	51.285	52.32	0.069874					67	38	3	0	0	0	0.24263	1	10604	10604		12.532	3.1841	1	112990	+		6519	12857	4385	4418	8858	8858					0.05570357931571834
HLWGMFLMM	9	Unmodified	_HLWGMFLMM_					0	0	0		ENST00000549040.5_1_12:106977470-107075774:+|nuORF;ENST00000357881.8_1_12:106995076-107075774:+|nuORF;ENST00000392842.5_1_12:106976790-107075774:+|nuORF	ENST00000549040.5_1_12:106977470-107075774:+|nuORF	ENST00000549040.5_1_12:106977470-107075774:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7699584960938	2	583.271401	1164.52825	0.61866	0.00036085	-0.44349	-0.00025868	0.17516	0.00010217	583.2711690474431	60.356	0.98303	60.356	60.152	61.135	0					49	35	2	0	0	0	0.24749	1	13540	13540		5.2307	0	1	105460			6520	6137	4386	4419	8859	8859					-0.047434073103886476
HLWGPGQWPI	10	Unmodified	_HLWGPGQWPI_					0	0	0		nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF	nc|ENSG00000134955|Q8TED4-3|SLC37A2	nc|ENSG00000134955|Q8TED4-3|SLC37A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2688598632812	2	595.808908	1189.60326	0.11263	6.7104E-05	-0.3716	-0.0002214	-0.25897	-0.0001543	595.8083892448593	83.616	0.30978	83.637	83.414	83.723	0.021744					16	10	2	0	0	0	0.31783	1	20344	20344		3.9444	0.3479	1	85757			6521	6989	4387	4420	8860	8860					0.01604557808377649
HLWNRPLE	8	Unmodified	_HLWNRPLE_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2685546875	2	532.785433	1063.55631	0.53223	0.00028356	4.1777	0.0022258	4.7099	0.0025094	533.2892881559949	69.927	0.25271	69.988	69.78	70.033	0.060562					17	9	2	0	0	0	0.3576	1	16229	16229		6.7232	1.4925	1	100590			6522	5680	4388	4421	8861	8861					0.02707698257222546
HLYNIKDHE	9	Unmodified	_HLYNIKDHE_					0	0	0		nc|ENSG00000162378|Q9C0D3-2|ZYG11B;ENSG00000162378|ENST00000294353|ZYG11B	nc|ENSG00000162378|Q9C0D3-2|ZYG11B	nc|ENSG00000162378|Q9C0D3-2|ZYG11B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.8054809570312	2	584.790912	1167.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.473	1	73.473	72.973	73.973	0								0	0	0	0.21527	1	17466	17466		15.847	0	1				6523	3822	4389	4422	8862	8862					-0.009809441591414725
HMHLHSDS	8	Unmodified	_HMHLHSDS_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7159423828125	2	482.208701	962.402849	-0.27109	-0.00013072	-2.2459	-0.001083	-2.517	-0.0012137	482.20806416798916	33.393	0.4307	33.468	33.234	33.665	0.074326					31	16	3	0	0	0	0.3576	1	5173	5173		2.5775	1.7838	1	41691			6524	4734	4390	4423	8863	8863					-0.07985659850737648
HMLLCSIPL	9	Unmodified	_HMLLCSIPL_					0	0	0		nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7785034179688	2	513.777373	1025.54019	0.44928	0.00023083	1.2629	0.00064886	1.7122	0.00087969	513.7779265789219	96.519	0.44229	96.559	96.398	96.841	0.039772					43	22	3	0	0	0	0.17247	1	24347	24347		21.747	4.6601	1	177210			6525	4043	4391	4424	8864	8864					0.028445327044664737
HMLLCSIPL	9	Unmodified	_HMLLCSIPL_					0	0	0		nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	513.777373	1025.54019	0.4371	0.00022457	1.0325	0.00053049	1.4696	0.00075506	513.7779127421559	96.591	0.51218	96.591	96.359	96.872	0	0.016186	-0.00011009	NaN	21.747	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307860			6526	4043	4391	4424							0.028445327044664737
HMLLCSIPL	9	Unmodified	_HMLLCSIPL_					0	0	0		nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	513.777373	1025.54019	0.44928	0.00023083	1.2629	0.00064886	1.7122	0.00087969	513.7779265789219	96.519	0.44229	96.559	96.398	96.841	0.039772	-0.016186	0.00012664	NaN	21.747	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177210			6527	4043	4391	4424							0.028445327044664737
HMLYCFTQQF	10	Unmodified	_HMLYCFTQQF_					0	0	0			REV__nc|ENSG00000110675|Q8N336-2|ELMOD1	REV__nc|ENSG00000110675|Q8N336-2|ELMOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.19775390625	3	439.863343	1316.5682	0.1804	7.9353E-05	-0.8545	-0.00037586	-0.67409	-0.00029651	439.8629650587715	37.656	0.56907	37.741	37.445	38.014	0.08448					31	18	2	0	0	0	0.47119	1	6492	6492		0.77653	0	1	53474	+		6528	8671	4392	4425	8865	8865					-0.0774218910610216
HMPNFGPRLF	10	Unmodified	_HMPNFGPRLF_					0	0	0			REV__SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant	REV__SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.2326354980469	3	405.874571	1214.60188	-0.15491	-6.2875E-05	-3.6911	-0.0014981	-3.846	-0.001561	405.8725837119382	45.144	0.54185	45.232	44.935	45.477	0.087543					38	20	3	0	0	0	0.31731	1	8686	8686		3.3196	0.58445	1	74195	+		6529	9752	4393	4426	8866	8866					0.0031660044796808506
HMRQVLGAP	9	Unmodified	_HMRQVLGAP_					0	0	0		FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant;ENSG00000154803|ENST00000285071|FLCN;ENST00000577591.1_1_17:17120364-17122368:-|nuORF;ENST00000427497.3_1_17:17110364-17131447:-|nuORF	FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant	FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.772216796875	2	504.774011	1007.53347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.676	1	54.741	54.241	55.241	0.065128								0	0	0	0.27427	1	11602	11602		4.3292	0.73274	1				6530	3566	4394	4427	8867	8867					0.030003558681187315
HMTMPRTFYVL	11	Unmodified	_HMTMPRTFYVL_					0	0	0			REV__nc|ENSG00000103091|Q6PJI9-3|WDR59	REV__nc|ENSG00000103091|Q6PJI9-3|WDR59	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7449645996094	3	465.901909	1394.6839	-0.08895	-4.1442E-05	-2.495	-0.0011624	-2.5839	-0.0012038	465.90065597178284	58.606	0.078594	58.606	58.542	58.621	0					4	2	2	0	0	0	0.31096	1	12926	12926		1.4551	0	1	46748	+		6531	8469	4395	4428	8868	8868					0.0023433474473222304
HMWHIAQRDY	10	Unmodified	_HMWHIAQRDY_					0	0	0		nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-8|OGG1	nc|ENSG00000114026|O15527-8|OGG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.87005615234375	3	452.880384	1355.61932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.25	1	116.26	115.76	116.76	0.013062								0	0	0	0.34005	1	29506	29506		0.15932	0	1				6532	1825	4396	4429	8869	8869					-0.04426104017034049
HMYWLLEC	8	Unmodified	_HMYWLLEC_					0	0	0			REV__ENSG00000132801|ENST00000255152|ZSWIM3	REV__ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7428588867188	2	547.743531	1093.47251	-0.22297	-0.00012213	-1.3428	-0.00073552	-1.5658	-0.00085765	547.742694674483	22.407	0.26941	22.407	22.209	22.478	0					23	19	2	0	0	0	0.53817	1	2084	2084		2.5775	0.27475	1	14590	+		6533	9130	4397	4430	8870	8870					-0.0704891722634784
HMYWLLEC	8	Unmodified	_HMYWLLEC_					0	0	0			REV__ENSG00000132801|ENST00000255152|ZSWIM3	REV__ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7423706054688	2	547.743531	1093.47251	0.10328	5.657E-05	-1.4882	-0.00081514	-1.3849	-0.00075857	547.742460047805	22.121	0.17904	22.223	22.148	22.327	0.10178					20	13	2	0	0	0	0.53817	1	1915	1915		2.5775	0.27475	1	11217	+		6534	9130	4397	4430	8871	8871					-0.0704891722634784
HMYWLLEC	8	Unmodified	_HMYWLLEC_					0	0	0			REV__ENSG00000132801|ENST00000255152|ZSWIM3	REV__ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	547.743531	1093.47251	-0.22297	-0.00012213	-1.3428	-0.00073552	-1.5658	-0.00085765	547.742694674483	22.407	0.26941	22.407	22.209	22.478	0	0.09223	6.8301E-05	NaN	2.5775	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14590	+		6535	9130	4397	4430							-0.0704891722634784
HMYWLLEC	8	Unmodified	_HMYWLLEC_					0	0	0			REV__ENSG00000132801|ENST00000255152|ZSWIM3	REV__ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	547.743531	1093.47251	0.10328	5.657E-05	-1.4882	-0.00081514	-1.3849	-0.00075857	547.742460047805	22.121	0.17904	22.223	22.148	22.327	0.10178	-0.09223	-9.0939E-05	NaN	2.5775	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11217	+		6536	9130	4397	4430							-0.0704891722634784
HNDRTYFF	8	Unmodified	_HNDRTYFF_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7505493164062	2	550.251423	1098.48829	0.51725	0.00028462	0.29398	0.00016176	0.81123	0.00044638	550.2514275238652	62.949	2.2743	63.021	62.478	64.752	0.072701					135	84	3	0	0	0	0.35713	1	13990	13990		14.582	3.7578	1	476650			6537	5383	4398	4431	8872	8872					-0.05701171393434379
HNEAPQALL	9	Unmodified	_HNEAPQALL_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-6|UNC80	REV__nc|ENSG00000144406|Q8N2C7-6|UNC80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7613525390625	2	496.761623	991.508694	0.3728	0.00018519	-0.38029	-0.00018891	-0.0074878	-3.7197E-06	496.7614309908928	38.593	1.1944	38.593	38.239	39.433	0					112	43	4	0	0	0	0.2546	1	6825	6825		12.241	0.60036	1	452900	+		6538	9495	4399	4432	8873	8873					0.012599992663922421
HNFLSLIVGF	10	Unmodified	_HNFLSLIVGF_					0	0	0			REV__ENSG00000105929|ENST00000310018|ATP6V0A4	REV__ENSG00000105929|ENST00000310018|ATP6V0A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8017578125	2	573.818941	1145.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.395	1	68.395	67.895	68.895	0								0	0	0	0.33092	1	15919	15919		10.824	1.4408	1		+		6539	8560	4400	4433	8874	8874					0.0563430874833557
HNLQYLYLE	9	Unmodified	_HNLQYLYLE_					0	0	0		ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7837524414062	2	596.803488	1191.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.598	1	93.635	93.135	94.135	0.037369								0	0	0	0.23884	1	23439	23439		11.64	0.81637	1				6540	4778	4401	4434	8875	8875					0.004291106434266112
HNMWRMYK	8	Unmodified	_HNMWRMYK_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2725830078125	2	583.273321	1164.53209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.34	1	24.34	23.84	24.84	0								0	0	0	0.38822	1	2657	2657		0.69038	0.088878	1		+		6541	9004	4402	4435	8876	8876					-0.04359601492319598
HNRFYHEEL	9	Unmodified	_HNRFYHEEL_					0	0	0		ENST00000480023.1_1_9:132591268-132591846:-|nuORF;ENST00000461762.5_1_9:132591268-132595829:-|nuORF;ENSG00000136819|ENST00000372447|C9orf78	ENST00000480023.1_1_9:132591268-132591846:-|nuORF	ENST00000480023.1_1_9:132591268-132591846:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.2949829101562	2	622.793986	1243.57342	-0.39104	-0.00024354	-0.66324	-0.00041306	-1.0543	-0.0006566	622.7930857293941	58.91	0.27621	58.91	58.734	59.01	0					15	9	3	0	0	0	0.25376	1	13032	13032		6.2058	0.47393	1	133220			6542	2812	4403	4436	8877	8877					-0.03862425927604818
HNRFYHEEL	9	Unmodified	_HNRFYHEEL_					0	0	0		ENST00000480023.1_1_9:132591268-132591846:-|nuORF;ENST00000461762.5_1_9:132591268-132595829:-|nuORF;ENSG00000136819|ENST00000372447|C9orf78	ENST00000480023.1_1_9:132591268-132591846:-|nuORF	ENST00000480023.1_1_9:132591268-132591846:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	622.793986	1243.57342	0.011993	7.4691E-06	-1.1078	-0.00068992	-1.0958	-0.00068245	622.7932951704383	58.804	0.27812	58.875	58.691	58.969	0.070477	-0.017812	-0.00020011	NaN	6.2058	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123990			6543	2812	4403	4436							-0.03862425927604818
HNRSYPYF	8	Unmodified	_HNRSYPYF_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2889404296875	2	542.253966	1082.49338	0.50776	0.00027533	-0.78231	-0.00042421	-0.27456	-0.00014888	542.7548004450517	70.878	0.10141	70.878	70.786	70.888	0					5	3	2	0	0	0	0.3576	1	16653	16653		5.2307	0.47466	1	38861	+		6544	8301	4404	4437	8878	8878					-0.04456867530825548
HNRYRVHF	8	Unmodified	_HNRYRVHF_					0	0	0		ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENST00000531140.1_1_11:121174081-121177378:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7931518554688	2	564.794124	1127.57369	0.18579	0.00010494	-0.92587	-0.00052293	-0.74008	-0.00041799	564.7934059869539	36.105	0.61661	36.187	35.966	36.583	0.081711					54	24	3	0	0	0	0.54097	1	6104	6104		0.69038	0	1	85952			6545	7027	4405	4438	8879	8879					0.01501038582887304
HNTVNQHPLP	10	Unmodified	_HNTVNQHPLP_					0	0	0			REV__ENSG00000062650|ENST00000298767|WAPL	REV__ENSG00000062650|ENST00000298767|WAPL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.301025390625	2	578.796529	1155.5785	0.34292	0.00019848	-2.9521	-0.0017087	-2.6092	-0.0015102	579.2955992609803	78.061	0.52449	78.061	77.899	78.423	0					37	17	3	0	0	0	0.31803	1	18824	18824		3.2813	0.70383	1	131960	+		6546	8087	4406	4439	8880	8880					0.006938779349866309
HNTVNQHPLP	10	Unmodified	_HNTVNQHPLP_					0	0	0			REV__ENSG00000062650|ENST00000298767|WAPL	REV__ENSG00000062650|ENST00000298767|WAPL	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	578.796529	1155.5785	0.57559	0.00033315	-2.0586	-0.0011915	-1.483	-0.00085835	579.2961767363686	78.065	0.62977	78.096	77.876	78.505	0.030518	0.017331	0.00050559	NaN	3.2813	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122840	+		6547	8087	4406	4439							0.006938779349866309
HNVRRWGDHP	10	Unmodified	_HNVRRWGDHP_					0	0	0		ENST00000396634.5_1_6:29913329-29913413:+|nuORF	ENST00000396634.5_1_6:29913329-29913413:+|nuORF	ENST00000396634.5_1_6:29913329-29913413:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.2152099609375	3	425.214755	1272.62244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.482	1	98.523	98.023	99.023	0.041931								0	0	0	0.33877	1	24930	24930		0.69767	0	1				6548	6344	4407	4440	8881	8881					-0.002970928480181101
HNYARQIR	8	Unmodified	_HNYARQIR_					0	0	0			REV__ENSG00000105926|ENST00000222644|PALS2	REV__ENSG00000105926|ENST00000222644|PALS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.28759765625	2	529.286131	1056.55771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.94	1	115.94	115.44	116.44	0								0	0	0	0.38822	1	29541	29541		0.69038	0	1		+		6549	8559	4408	4441	8882	8882					0.03169332345987641
HNYYISRIY	9	Unmodified	_HNYYISRIY_					0	0	0		ENST00000377238.2_1_10:20332341-20568745:+|nuORF;ENSG00000120594|ENST00000377252|PLXDC2	ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENST00000377238.2_1_10:20332341-20568745:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.807861328125	2	614.809105	1227.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.09	1	33.09	32.59	33.59	0								0	0	0	0.2927	1	5215	5215		0.52476	0.12405	1				6550	2127	4409	4442	8883	8883					-0.001040672624412764
HPADKDYGL	9	Unmodified	_HPADKDYGL_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENST00000393023.2_1_13:64385317-64385740:-|nuORF;ENSG00000184203|ENST00000618156|PPP1R2	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.24566650390625	2	508.245806	1014.47706	-0.2019	-0.00010261	-0.024905	-1.2658E-05	-0.2268	-0.00011527	508.2456655353975	27.472	0.99853	27.472	27.166	28.165	0					143	69	4	0	0	0	0.25162	1	3578	3578		8.1555	0.8663	1	184740			6551	4962	4410	4443	8884	8884					-0.029599934875591316
HPAGPLHVR	9	Unmodified	_HPAGPLHVR_					0	0	0		KCNK3|p.V123Sfs*518|1|0.04|ENSG00000171303|chr2:26727748-26727749|-/TTCTATTGTA|frameshift_variant	KCNK3|p.V123Sfs*518|1|0.04|ENSG00000171303|chr2:26727748-26727749|-/TTCTATTGTA|frameshift_variant	KCNK3|p.V123Sfs*518|1|0.04|ENSG00000171303|chr2:26727748-26727749|-/TTCTATTGTA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7091064453125	2	492.280318	982.546083	-0.024858	-1.2237E-05	-1.3826	-0.00068062	-1.4074	-0.00069285	492.27956194083396	24.923	0.25691	25.02	24.894	25.151	0.096073					28	22	2	0	0	0	0.25644	1	2722	2722		3.9444	0	1	12494			6552	7367	4411	4444	8885	8885					0.05411135322651717
HPAGPLHVR	9	Unmodified	_HPAGPLHVR_					0	0	0		KCNK3|p.V123Sfs*518|1|0.04|ENSG00000171303|chr2:26727748-26727749|-/TTCTATTGTA|frameshift_variant	KCNK3|p.V123Sfs*518|1|0.04|ENSG00000171303|chr2:26727748-26727749|-/TTCTATTGTA|frameshift_variant	KCNK3|p.V123Sfs*518|1|0.04|ENSG00000171303|chr2:26727748-26727749|-/TTCTATTGTA|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	492.280318	982.546083	-0.16773	-8.2571E-05	-1.417	-0.00069757	-1.5847	-0.00078014	492.27969658122817	25.081	0.22697	25.081	24.971	25.198	0	0.030678	-8.7836E-06	NaN	3.9444	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13472			6553	7367	4411	4444							0.05411135322651717
HPALSGSPDPQ	11	Unmodified	_HPALSGSPDPQ_					0	0	0		ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	ENSG00000275793|ENST00000619918|RIMBP3	ENSG00000275793|ENST00000619918|RIMBP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2671508789062	2	553.26727	1104.51999	0.071014	3.929E-05	-0.0036331	-2.0101E-06	0.067381	3.728E-05	553.2671941370072	27.49	0.62024	27.576	27.491	28.112	0.0867					92	44	3	0	0	0	0.40796	1	3439	3439		2.4985	0.43874	1	74607			6554	4914	4412	4445	8886	8886					-0.028092234301539065
HPAMLYEM	8	Unmodified	_HPAMLYEM_					0	0	0		tr|U7SGC3|U7SGC3_FUSNUPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lgtPE=3SV=1	tr|U7SGC3|U7SGC3_FUSNUPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lgtPE=3SV=1	tr|U7SGC3|U7SGC3_FUSNUPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lgtPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7615051269531	2	496.222431	990.430309	0.34506	0.00017123	2.3055	0.001144	2.6505	0.0013153	496.2238321801555	38.917	0.37845	38.917	38.625	39.004	0					23	14	2	0	0	0	0.3576	1	6965	6965		2.5775	0	1	13617			6555	13457	4413	4446	8887	8887					-0.0652889263473071
HPAPDHQSL	9	Unmodified	_HPAPDHQSL_					0	0	0		ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7294616699219	2	501.243598	1000.47264	0.081942	4.1073E-05	-0.44079	-0.00022094	-0.35884	-0.00017987	501.24328925683875	21.077	0.58908	21.177	21.018	21.607	0.099499					128	63	3	0	0	0	0.24366	1	1665	1665		13.042	5.7532	1	88986			6556	4328	4414	4447	8888	8888					-0.027574579104793884
HPARPTVEF	9	Unmodified	_HPARPTVEF_					0	0	0		chr8:143931659-143932130|203|20.13|0.24|6.42|-|0|PLEC,PLEC|1	chr8:143931659-143932130|203|20.13|0.24|6.42|-|0|PLEC,PLEC|1	chr8:143931659-143932130|203|20.13|0.24|6.42|-|0|PLEC,PLEC|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2779541015625	2	527.277441	1052.54033	0.028171	1.4854E-05	-0.047065	-2.4816E-05	-0.018894	-9.9626E-06	527.2773217542433	34.586	1.1581	34.586	34.231	35.389	0					101	44	3	0	0	0	0.32614	1	5797	5797		3.2813	3.2813	1	191970			6557	185	4415	4448	8889	8889					0.016159920203108413
HPASDKIEAYM	11	Unmodified	_HPASDKIEAYM_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.799072265625	2	631.297713	1260.58087	-0.12073	-7.6215E-05	0.18151	0.00011459	0.060787	3.8375E-05	631.2977765377467	39.49	0.95031	39.49	39.258	40.208	0					59	33	3	0	0	0	0.27924	2	7154	7108;7154		30.703	24.972	1	210660			6558	1110	4416	4449	8890;8891	8891					-0.03899454442239403
HPASDKIEAYM	11	Unmodified	_HPASDKIEAYM_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.2979125976562	2	631.297713	1260.58087	0.13927	8.7919E-05	0.060527	3.8211E-05	0.19979	0.00012613	631.2976775255619	39.39	0.45825	39.478	39.27	39.728	0.088566					47	18	3	0	0	0	0.27924	2	6991	6949;6991		30.703	24.972	1	193310			6559	1110	4416	4449	8892;8893	8893					-0.03899454442239403
HPASDKIEAYM	11	Unmodified	_HPASDKIEAYM_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.20135498046875	3	421.200901	1260.58087	-0.022831	-9.6166E-06	-0.035007	-1.4745E-05	-0.057838	-2.4362E-05	421.2009359104738	39.369	0.48473	39.458	39.244	39.728	0.088562					54	19	4	0	0	0	0.37201	1	6956	6956		9.7643	4.3615	1	264870			6560	1110	4416	4449	8894	8894					-0.03899454442239403
HPAVLTLSGI	10	Unmodified	_HPAVLTLSGI_					0	0	0		ENST00000229829.6_1_6:32974298-32974526:-|nuORF	ENST00000229829.6_1_6:32974298-32974526:-|nuORF	ENST00000229829.6_1_6:32974298-32974526:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2977294921875	2	504.297842	1006.58113	0.1149	5.7943E-05	-0.091396	-4.6091E-05	0.023503	1.1852E-05	504.297937742201	36.568	6.215	36.568	36.208	42.423	0					562	227	5	0	0	0	0.41688	1	6877	6877		10.074	0	1	3794600			6561	5809	4417	4450	8895	8895					0.0781033333993264
HPCGGAQR	8	Unmodified	_HPCGGAQR_					0	0	0			REV__ENST00000544123.5_2_18:5406782-5406863:-|nuORF	REV__ENST00000544123.5_2_18:5406782-5406863:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.1934814453125	2	413.192854	824.371155	0.14308	5.9118E-05	0.48495	0.00020038	0.62802	0.00025949	413.1934573831675	78.777	3.5462	78.807	77.461	81.007	0.030159					362	124	5	0	0	0	0.54081	1	19106	19106		0.79363	0	1	6509300	+		6562	12409	4418	4451	8896	8896					-0.048056078140234604
HPDAQAEVRL	10	Unmodified	_HPDAQAEVRL_					0	0	0		ENSG00000187244|ENST00000270233|BCAM;ENST00000588303.1_1_19:45312375-45314729:+|nuORF	ENSG00000187244|ENST00000270233|BCAM	ENSG00000187244|ENST00000270233|BCAM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2966918945312	2	568.296362	1134.57817	-0.035521	-2.0187E-05	0.24839	0.00014116	0.21287	0.00012097	568.2966383486134	33.424	0.49897	33.498	33.327	33.826	0.074322					26	19	2	0	0	0	0.43503	1	5209	5209		7.609	2.3121	1	28732			6563	5115	4419	4452	8897	8897					0.016264582151279683
HPDAQAEVRL	10	Unmodified	_HPDAQAEVRL_					0	0	0		ENSG00000187244|ENST00000270233|BCAM;ENST00000588303.1_1_19:45312375-45314729:+|nuORF	ENSG00000187244|ENST00000270233|BCAM	ENSG00000187244|ENST00000270233|BCAM	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	568.296362	1134.57817	-0.09363	-5.321E-05	0.49397	0.00028072	0.40034	0.00022751	568.2966881836832	33.544	0.57934	33.544	33.303	33.883	0	0.023144	0.00011424	NaN	7.609	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25670			6564	5115	4419	4452							0.016264582151279683
HPDASVNFSEF	11	Unmodified	_HPDASVNFSEF_					0	0	0		ENST00000559968.1_1_14:68082236-68082464:+|nuORF;ENSG00000189403|ENST00000341423|HMGB1	ENST00000559968.1_1_14:68082236-68082464:+|nuORF	ENST00000559968.1_1_14:68082236-68082464:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.2784423828125	2	625.277835	1248.54112	0.055697	3.4826E-05	0.4451	0.00027831	0.5008	0.00031314	625.2780645192056	57.039	0.38174	57.039	56.885	57.267	0					15	13	2	0	0	0	0.38984	1	12470	12470		6.6304	0.89852	1	83103			6565	5199	4420	4453	8898	8898					-0.07321258121260144
HPDAVVETSSL	11	Unmodified	_HPDAVVETSSL_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7879638671875	2	577.788035	1153.56152	-0.18322	-0.00010586	0.14085	8.1384E-05	-0.042365	-2.4478E-05	577.7880451558672	43.016	0.43398	43.016	42.829	43.263	0					34	14	3	0	0	0	0.33157	1	8207	8207		14.405	7.3037	1	73301			6566	2981	4421	4454	8899	8899					-0.00912087461460942
HPDAVVETSSL	11	Unmodified	_HPDAVVETSSL_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7876586914062	2	577.788035	1153.56152	-0.037161	-2.1471E-05	0.44221	0.00025551	0.40505	0.00023403	577.7880711146684	42.984	0.49216	43.074	42.838	43.33	0.089764					38	18	3	0	0	0	0.36299	1	8079	8079		10.8	3.5103	1	56432			6567	2981	4421	4454	8900	8900					-0.00912087461460942
HPDEDISL	8	Unmodified	_HPDEDISL_					0	0	0		ENST00000584696.1_1_17:30693734-30695045:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	463.2165222167969	2	463.216714	924.418876	-0.52629	-0.00024379	-0.046258	-2.1428E-05	-0.57255	-0.00026521	463.2166208772986	41.874	1.1596	41.964	41.621	42.781	0.089764					121	44	4	0	0	0	0.22517	2	7753	7708;7753		40.449	6.2612	1	721610			6568	411	4422	4455	8901;8902	8902					-0.04635675132851702
HPDENILRF	9	Unmodified	_HPDENILRF_					0	0	0		tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7938232421875	2	570.793455	1139.57236	0.18103	0.00010333	0.056238	3.21E-05	0.23727	0.00013543	570.7934834373119	38.606	2.2299	38.606	38.332	40.562	0					147	81	4	0	0	0	0.32375	1	6994	6994		3.5965	0	1	258260			6569	13649	4423	4456	8903	8903					0.008153597034834092
HPDEPLYSF	9	Unmodified	_HPDEPLYSF_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7529296875	2	552.753464	1103.49238	0.6547	0.00036189	0.018313	1.0123E-05	0.67301	0.00037201	552.7530153888473	55.155	1.0388	55.155	54.827	55.866	0					79	37	3	0	0	0	0.011655	1	11862	11862		64.236	22.142	1	429470			6570	2058	4424	4457	8904	8904					-0.05523126690377467
HPDEPLYSF	9	Unmodified	_HPDEPLYSF_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7529296875	2	552.753464	1103.49238	0.70949	0.00039218	0.001768	9.7726E-07	0.71126	0.00039315	552.7530839622679	55.053	0.94167	55.118	54.846	55.787	0.065128					79	36	3	0	0	0	0.011655	2	11714	11714;11759		64.236	22.142	1	394130			6571	2058	4424	4457	8905;8906	8905					-0.05523126690377467
HPDESGSKFQL	11	Unmodified	_HPDESGSKFQL_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7993774414062	2	622.798934	1243.58332	-0.18979	-0.0001182	0.71239	0.00044368	0.5226	0.00032547	622.7993074414907	35.611	1.0629	35.611	35.314	36.377	0					84	40	3	0	0	0	0.34443	2	5972	5922;5972		20.581	12.972	1	113940			6572	1203	4425	4458	8907;8908	8908					-0.028732827129033467
HPDESGSKFQL	11	Unmodified	_HPDESGSKFQL_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.5348815917969	3	415.535048	1243.58332	0.31708	0.00013176	-0.47652	-0.00019801	-0.15945	-6.6256E-05	415.5347808408764	35.64	1.4035	35.64	35.259	36.663	0					117	53	3	0	0	0	0.37654	2	5939	5939;5987		9.2438	4.8376	1	174800			6573	1203	4425	4458	8909;8910	8909					-0.028732827129033467
HPDESGSKFQL	11	Unmodified	_HPDESGSKFQL_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.799072265625	2	622.798934	1243.58332	-0.02599	-1.6187E-05	0.42313	0.00026352	0.39713	0.00024734	622.7991256923034	35.477	0.79573	35.556	35.36	36.156	0.078827					50	29	2	0	0	0	0.38451	2	5829	5781;5829		13.615	2.1202	1	111590			6574	1203	4425	4458	8911;8912	8912					-0.028732827129033467
HPDESGSKFQL	11	Unmodified	_HPDESGSKFQL_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.534912109375	3	415.535048	1243.58332	-0.022239	-9.2411E-06	-0.17606	-7.3159E-05	-0.1983	-8.24E-05	415.5349414404042	35.484	1.058	35.563	35.279	36.337	0.078831					108	40	5	0	0	0	0.1845	2	5803	5803;5845		32.616	25.993	1	226960			6575	1203	4425	4458	8913;8914	8913					-0.028732827129033467
HPDFPTVLTAL	11	Unmodified	_HPDFPTVLTAL_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2999877929688	2	605.826963	1209.63937	0.73004	0.00044228	-0.80863	-0.00048989	-0.078588	-4.7611E-05	605.8271402745414	75.16	0.96125	75.16	74.69	75.652	0					51	36	2	0	0	0	0.28093	1	18038	18038		26.268	3.5319	1	799680			6576	3872	4426	4459	8915	8915					0.042939701945670095
HPDFPTVLTAL	11	Unmodified	_HPDFPTVLTAL_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2997436523438	2	605.826963	1209.63937	0.75205	0.00045561	-0.75832	-0.00045941	-0.0062722	-3.7999E-06	605.8270447227264	75.115	0.867	75.159	74.752	75.619	0.044044					47	31	2	0	0	0	0.26619	1	17860	17860		31.268	14.155	1	852820			6577	3872	4426	4459	8916	8916					0.042939701945670095
HPDFRESS	8	Unmodified	_HPDFRESS_					0	0	0		nc|ENSG00000136854|P61764-2|STXBP1	nc|ENSG00000136854|P61764-2|STXBP1	nc|ENSG00000136854|P61764-2|STXBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.71978759765625	2	487.719956	973.425358	-0.36481	-0.00017793	0.25767	0.00012567	-0.10714	-5.2253E-05	487.7200325816016	24.834	0.65181	24.834	24.649	25.301	0					90	49	2	0	0	0	0.50159	1	2778	2778		12.532	0	1	106560			6578	7507	4427	4460	8917	8917					-0.062417371814717626
HPDGVASVSF	10	Unmodified	_HPDGVASVSF_					0	0	0		ENSG00000102241|ENST00000218364|HTATSF1	ENSG00000102241|ENST00000218364|HTATSF1	ENSG00000102241|ENST00000218364|HTATSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2456359863281	2	508.245806	1014.47706	0.40136	0.00020399	-0.24427	-0.00012415	0.1571	7.9844E-05	508.24571746402853	47.353	0.51035	47.436	47.178	47.688	0.083096					33	20	2	0	0	0	0.35104	1	9373	9373		17.113	1.8644	1	67536			6579	1306	4428	4461	8918	8918					-0.029599934875591316
HPDIFIEHF	9	Unmodified	_HPDIFIEHF_					0	0	0		nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENSG00000121690|ENST00000241051|DEPDC7	nc|ENSG00000121690|Q96QD5-2|DEPDC7	nc|ENSG00000121690|Q96QD5-2|DEPDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7852783203125	2	577.785099	1153.55564	0.22747	0.00013143	0.39806	0.00022999	0.62552	0.00036142	577.785211526406	56.702	0.58289	56.702	56.512	57.095	0					41	21	3	0	0	0	0.037705	1	12412	12412		46.021	33.78	1	179820			6580	2158	4429	4462	8919	8919					-0.014991411824667011
HPDIFIEHF	9	Unmodified	_HPDIFIEHF_					0	0	0		nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENSG00000121690|ENST00000241051|DEPDC7	nc|ENSG00000121690|Q96QD5-2|DEPDC7	nc|ENSG00000121690|Q96QD5-2|DEPDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7855224609375	2	577.785099	1153.55564	0.3761	0.0002173	0.20502	0.00011846	0.58112	0.00033576	577.785122626306	56.758	0.60492	56.824	56.543	57.148	0.066448					36	21	2	0	0	0	0.065541	1	12240	12240		39.957	24.11	1	166960			6581	2158	4429	4462	8920	8920					-0.014991411824667011
HPDIIRPIT	9	Unmodified	_HPDIIRPIT_					0	0	0		ENSG00000171903|ENST00000402119|CYP4F11	ENSG00000171903|ENST00000402119|CYP4F11	ENSG00000171903|ENST00000402119|CYP4F11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3096313476562	2	531.308741	1060.60293	0.36712	0.00019505	-0.15747	-8.3667E-05	0.20965	0.00011139	531.3085646879548	51.368	0.62409	51.437	51.18	51.804	0.069874					36	23	2	0	0	0	0.20358	3	10581	10581;10632;10648		18.146	0	1	130760			6582	4471	4430	4463	8921;8922;8923	8921					0.07505138088504282
HPDLLIKVL	9	Unmodified	_HPDLLIKVL_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.3317260742188	2	524.331685	1046.64882	0.15584	8.171E-05	0.020804	1.0908E-05	0.17664	9.2618E-05	524.3314602499798	59.384	1.0901	59.384	58.979	60.069	0					84	41	3	0	0	0	0.029291	1	13147	13147		51.63	20.993	1	296910			6583	2683	4431	4464	8924	8924					0.1273578327075029
HPDLLIKVL	9	Unmodified	_HPDLLIKVL_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.3319091796875	2	524.331685	1046.64882	0.086178	4.5186E-05	-0.062273	-3.2652E-05	0.023905	1.2534E-05	524.3315761150191	59.262	1.1029	59.334	59.021	60.124	0.072338					73	43	2	0	0	0	0.0093779	3	12998	12939;12998;13062		69.105	43.706	1	261200			6584	2683	4431	4464	8925;8926;8927	8926					0.1273578327075029
HPDLLSDTHL	10	Unmodified	_HPDLLSDTHL_					0	0	0		nc|ENSG00000138002|Q9UG01-2|IFT172;IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172	nc|ENSG00000138002|Q9UG01-2|IFT172	nc|ENSG00000138002|Q9UG01-2|IFT172	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.291015625	2	574.290745	1146.56694	0.1274	7.3162E-05	0.0054593	3.1352E-06	0.13286	7.6298E-05	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.16299	2	6116	6116;6436		37.974	4.2403	1	8357100			6585	2884	4432	4465	8928;8929	8928					-0.00048363879000135057
HPDNQQLK	8	Unmodified	_HPDNQQLK_					0	0	0		nc|ENSG00000163808|Q9NS87-3|KIF15;nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15	nc|ENSG00000163808|Q9NS87-3|KIF15	nc|ENSG00000163808|Q9NS87-3|KIF15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.25274658203125	2	490.251423	978.488293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.984	1	40.072	39.572	40.572	0.088562								0	0	0	0.38822	1	7162	7162		0.69038	0	1				6586	3947	4433	4466	8930	8930					-0.001811713934330328
HPDPDSSVKI	10	Unmodified	_HPDPDSSVKI_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.777587890625	2	547.77747	1093.54039	-0.068236	-3.7378E-05	0.47593	0.00026071	0.4077	0.00022333	547.7776672209026	31.807	0.66593	31.807	31.517	32.183	0					71	27	4	0	0	0	0.095597	2	4844	4796;4844		45.74	27.594	1	171460			6587	5382	4434	4467	8931;8932	8932					-0.0026405277030789875
HPDPDSSVKI	10	Unmodified	_HPDPDSSVKI_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7782592773438	2	547.77747	1093.54039	-0.0083329	-4.5646E-06	0.36245	0.00019854	0.35412	0.00019398	547.7775597306959	31.748	0.83967	31.822	31.515	32.355	0.073782					86	38	4	0	0	0	0.18939	1	4659	4659		34.932	16.786	1	137200			6588	5382	4434	4467	8933	8933					-0.0026405277030789875
HPDPFANKSL	10	Unmodified	_HPDPFANKSL_					0	0	0		ENST00000505226.1_1_6:83748090-83767722:-|nuORF;ENST00000237186.10_1_6:83602743-83775466:-|nuORF;ENSG00000118420|ENST00000369747|UBE3D	ENST00000505226.1_1_6:83748090-83767722:-|nuORF	ENST00000505226.1_1_6:83748090-83767722:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2880249023438	2	563.288005	1124.56146	0.3	0.00016899	-0.61481	-0.00034632	-0.31481	-0.00017733	563.2874372426209	37.695	0.473	37.695	37.577	38.05	0					26	15	2	0	0	0	0.31784	1	6606	6606		4.5289	1.2476	1	48732			6589	2038	4435	4468	8934	8934					0.004159573291644847
HPDPFANKSL	10	Unmodified	_HPDPFANKSL_					0	0	0		ENST00000505226.1_1_6:83748090-83767722:-|nuORF;ENST00000237186.10_1_6:83602743-83775466:-|nuORF;ENSG00000118420|ENST00000369747|UBE3D	ENST00000505226.1_1_6:83748090-83767722:-|nuORF	ENST00000505226.1_1_6:83748090-83767722:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.287841796875	2	563.288005	1124.56146	0.33951	0.00019124	1.3075	0.00073652	1.647	0.00092776	563.2879112107297	37.601	0.33339	37.685	37.505	37.838	0.084476					25	10	3	0	0	0	0.44496	1	6475	6475		5.7319	0	1	46191			6590	2038	4435	4468	8935	8935					0.004159573291644847
HPDPTRLLL	9	Unmodified	_HPDPTRLLL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.30908203125	2	531.308741	1060.60293	0.19094	0.00010145	0.041835	2.2227E-05	0.23277	0.00012367	531.3086396285569	51.457	0.70226	51.457	51.208	51.91	0					41	23	3	0	0	0	0.17428	2	10744	10744;10800		21.537	3.3906	1	126540			6591	4937	4436	4469	8936;8937	8936					0.07505138088527019
HPDPTRLLLF	10	Unmodified	_HPDPTRLLLF_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8432006835938	2	604.842948	1207.67134	0.99692	0.00060298	-0.40393	-0.00024432	0.59299	0.00035867	604.8427682876555	66.155	1.0781	66.155	65.909	66.987	0					93	40	3	0	0	0	0.20704	1	15246	15246		38.176	21.063	1	813530			6592	4937	4437	4470	8938	8938					0.07581382668354308
HPDPTRLLLF	10	Unmodified	_HPDPTRLLLF_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.843017578125	2	604.842948	1207.67134	0.91629	0.00055421	-0.3797	-0.00022966	0.53659	0.00032456	604.8427565422023	66.18	1.0414	66.247	65.971	67.013	0.066872					80	39	3	0	0	0	0.20704	1	15087	15087		38.176	16.639	1	713040			6593	4937	4437	4470	8939	8939					0.07581382668354308
HPDQAQAIL	9	Unmodified	_HPDQAQAIL_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.76165771484375	2	496.761623	991.508694	0.3728	0.00018519	-0.38029	-0.00018891	-0.0074878	-3.7197E-06	496.7614309908928	38.593	1.1944	38.593	38.239	39.433	0					112	43	4	0	0	0	0.20358	2	6919	6875;6919		18.146	3.3081	1	452900			6594	1897	4438	4471	8940;8941	8941					0.012599992663695048
HPDQAQAIL	9	Unmodified	_HPDQAQAIL_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.76171875	2	496.761623	991.508694	0.42959	0.0002134	-0.35166	-0.00017469	0.077933	3.8714E-05	496.7614619752522	38.52	1.1005	38.607	38.262	39.363	0.086884					103	41	4	0	0	0	0.12214	2	6715	6715;6759		27.629	3.6082	1	365350			6595	1897	4438	4471	8942;8943	8942					0.012599992663695048
HPDRSQPAF	9	Unmodified	_HPDRSQPAF_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.756591796875	2	527.756872	1053.49919	-0.22727	-0.00011994	-0.012252	-6.4658E-06	-0.23952	-0.00012641	527.7568150768802	24.491	1.3489	24.491	24.213	25.562	0					235	107	4	0	0	0	0.11198	4	2690	2690;2727;2763;2806		29.841	19.017	1	179450			6596	5552	4439	4472	8944;8945;8946;8947	8944					-0.025417690191488873
HPDRSQPAF	9	Unmodified	_HPDRSQPAF_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7566528320312	2	527.756872	1053.49919	-0.056787	-2.997E-05	-0.10455	-5.5175E-05	-0.16133	-8.5145E-05	527.7567526134204	24.252	0.96861	24.352	24.098	25.067	0.099739					218	87	4	0	0	0	0.020768	4	2537	2471;2504;2537;2570		57.722	37.268	1	217170			6597	5552	4439	4472	8948;8949;8950;8951	8950					-0.025417690191488873
HPDSHPHLVS	10	Unmodified	_HPDSHPHLVS_					0	0	0		ENST00000245407.7_1_5:131726498-131729479:+|nuORF	ENST00000245407.7_1_5:131726498-131729479:+|nuORF	ENST00000245407.7_1_5:131726498-131729479:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2880249023438	2	563.275429	1124.53631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.721	1	37.721	37.221	38.221	0								0	0	0	0.33443	1	6606	6606		6.7232	0.51738	1				6598	5831	4440	4473	8952	8952					-0.02098097473412963
HPDSIEYGL	9	Unmodified	_HPDSIEYGL_					0	0	0		nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8;ENSG00000147099|ENST00000373573|HDAC8	nc|ENSG00000147099|Q9BY41-8|HDAC8	nc|ENSG00000147099|Q9BY41-8|HDAC8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.28076171875	2	515.745639	1029.47673	0.46347	0.00023903	0.36002	0.00018568	0.82349	0.00042471	515.7455780814604	47.595	0.69786	47.595	47.263	47.961	0					34	23	2	0	0	0	0.23598	1	9610	9610		15.847	6.4997	1	59461			6599	3314	4441	4474	8953	8953					-0.036834132074318404
HPDSIEYGL	9	Unmodified	_HPDSIEYGL_					0	0	0		nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8;ENSG00000147099|ENST00000373573|HDAC8	nc|ENSG00000147099|Q9BY41-8|HDAC8	nc|ENSG00000147099|Q9BY41-8|HDAC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7454223632812	2	515.745639	1029.47673	0.50443	0.00026016	-0.25721	-0.00013266	0.24722	0.0001275	515.7453712785116	47.497	0.4104	47.58	47.348	47.759	0.083092					22	16	2	0	0	0	0.29576	1	9444	9444		7.2892	1.5574	1	76791			6600	3314	4441	4474	8954	8954					-0.036834132074318404
HPDTLREC	8	Unmodified	_HPDTLREC_					0	0	0			REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF	REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7223815917969	2	485.724184	969.433814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.429	1	35.429	34.929	35.929	0								0	0	0	0.38822	1	5915	5915		10.824	0	1		+		6601	11862	4442	4475	8955	8955					-0.05212506536497585
HPDVAKVSF	9	Unmodified	_HPDVAKVSF_					0	0	0		ENST00000491436.1_1_1:165638124-165649867:-|nuORF;nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1;ENSG00000143149|ENST00000354775|ALDH9A1	ENST00000491436.1_1_1:165638124-165649867:-|nuORF	ENST00000491436.1_1_1:165638124-165649867:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.28271484375	2	500.266542	998.51853	0.34714	0.00017366	0.034265	1.7142E-05	0.3814	0.0001908	500.266575562062	38.047	0.87426	38.047	37.783	38.657	0					62	29	3	0	0	0	0.20358	1	6735	6735		18.146	4.6385	1	85750			6602	3131	4443	4476	8956	8956					0.01921187271761937
HPDVAKVSF	9	Unmodified	_HPDVAKVSF_					0	0	0		ENST00000491436.1_1_1:165638124-165649867:-|nuORF;nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1;ENSG00000143149|ENST00000354775|ALDH9A1	ENST00000491436.1_1_1:165638124-165649867:-|nuORF	ENST00000491436.1_1_1:165638124-165649867:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2664794921875	2	500.266542	998.51853	0.35479	0.00017749	-0.034233	-1.7125E-05	0.32055	0.00016036	500.2665625291881	37.942	0.81738	38.027	37.716	38.533	0.084476					64	29	3	0	0	0	0.23216	2	6565	6565;6572		14.838	3.198	1	72700			6603	3131	4443	4476	8957;8958	8957					0.01921187271761937
HPDVEVDGF	9	Unmodified	_HPDVEVDGF_					0	0	0		PARP1-LIN9|1|fusion;ENSG00000143799|ENST00000366794|PARP1	PARP1-LIN9|1|fusion;ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7297058105469	2	507.729989	1013.44543	0.13787	6.9998E-05	-0.26238	-0.00013322	-0.12452	-6.3221E-05	507.72975001794634	49.865	1.1986	49.865	49.508	50.707	0					94	42	3	0	0	0	0.024893	2	10318	10273;10318		54.774	21.988	1	367070			6604	3183;7660	4444	4477	8959;8960	8960					-0.0607598624151251
HPDVEVDGF	9	Unmodified	_HPDVEVDGF_					0	0	0		PARP1-LIN9|1|fusion;ENSG00000143799|ENST00000366794|PARP1	PARP1-LIN9|1|fusion;ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7297668457031	2	507.729989	1013.44543	0.18128	9.204E-05	-0.19956	-0.00010132	-0.018279	-9.2808E-06	507.72979571205144	49.799	0.93578	49.872	49.564	50.5	0.07312					76	32	3	0	0	0	0.028398	2	10169	10120;10169		52.268	19.483	1	311480			6605	3183;7660	4444	4477	8961;8962	8962					-0.0607598624151251
HPDYAEYIF	9	Unmodified	_HPDYAEYIF_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7621459960938	2	577.761289	1153.50803	0.54696	0.00031601	-0.46806	-0.00027043	0.078894	4.5582E-05	577.7611657258662	63.964	0.73041	63.964	63.679	64.409	0					35	25	2	0	0	0	0.25979	2	14532	14532;14589		11.64	3.7301	1	164190			6606	1230	4445	4478	8963;8964	8963					-0.06258840173336466
HPDYAEYIF	9	Unmodified	_HPDYAEYIF_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7600708007812	2	577.761289	1153.50803	0.5021	0.00029009	-0.5113	-0.00029541	-0.0092012	-5.3161E-06	577.7609053751988	63.945	0.72576	64.016	63.732	64.458	0.071018					33	24	2	0	0	0	0.25979	1	14391	14391		11.64	1.5664	1	139140			6607	1230	4445	4478	8965	8965					-0.06258840173336466
HPDYGSHIQAL	11	Unmodified	_HPDYGSHIQAL_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.3011474609375	2	619.301644	1236.58874	-0.18086	-0.00011201	0.38108	0.000236	0.20022	0.00012399	619.3018334938988	38.653	0.82375	38.653	38.362	39.186	0					70	30	3	0	0	0	0.12206	3	6847	6847;6900;6945		42.312	31.513	1	150310			6608	2159	4446	4479	8966;8967;8968	8966					-0.02009559130397065
HPDYGSHIQAL	11	Unmodified	_HPDYGSHIQAL_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3016967773438	2	619.301644	1236.58874	-6.9898E-05	-4.3288E-08	0.22184	0.00013738	0.22177	0.00013734	619.3017515388043	38.525	0.6355	38.612	38.358	38.994	0.08688					64	23	3	0	0	0	0.059923	3	6725	6677;6725;6770		55.235	43.74	1	137520			6609	2159	4446	4479	8969;8970;8971	8970					-0.02009559130397065
HPDYREIS	8	Unmodified	_HPDYREIS_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7431945800781	2	508.743431	1015.47231	0.1262	6.4203E-05	-0.21258	-0.00010815	-0.08638	-4.3945E-05	508.743138949236	35.534	0.68583	35.613	35.36	36.046	0.078831					52	25	3	0	0	0	0.45211	2	5805	5805;5863		19.257	2.3147	1	151390	+		6610	10478	4447	4480	8972;8973	8972					-0.0348087763032936
HPDYSFGEL	9	Unmodified	_HPDYSFGEL_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7381591796875	2	532.737814	1063.46108	0.53997	0.00028766	0.2778	0.00014799	0.81776	0.00043565	532.7377952369668	55.429	0.80334	55.429	55.085	55.889	0					62	28	3	0	0	0	0.028398	4	11964	11916;11964;12011;12069		52.268	40.628	1	297240			6611	3964	4448	4481	8974;8975;8976;8977	8975					-0.06811699724448772
HPDYSFGEL	9	Unmodified	_HPDYSFGEL_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7379150390625	2	532.737814	1063.46108	0.58141	0.00030974	0.61353	0.00032685	1.1949	0.00063659	532.7380096511519	55.423	0.916	55.488	55.123	56.039	0.065128					74	33	3	0	0	0	0.047633	2	11821	11770;11821		43.858	27.709	1	225710			6612	3964	4448	4481	8978;8979	8979					-0.06811699724448772
HPEAVQAHVL	10	Unmodified	_HPEAVQAHVL_					0	0	0		ENSG00000187024|ENST00000543175|PTRH1	ENSG00000187024|ENST00000543175|PTRH1	ENSG00000187024|ENST00000543175|PTRH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7957763671875	2	550.795998	1099.57744	-0.019914	-1.0968E-05	0.006836	3.7653E-06	-0.013078	-7.203E-06	550.7959440744921	32.277	0.53247	32.277	32.082	32.614	0					31	22	2	0	0	0	0.44496	1	4957	4957		5.7319	0.43497	1	32929			6613	5104	4449	4482	8980	8980					0.03163663566078867
HPEAVQAHVL	10	Unmodified	_HPEAVQAHVL_					0	0	0		ENSG00000187024|ENST00000543175|PTRH1	ENSG00000187024|ENST00000543175|PTRH1	ENSG00000187024|ENST00000543175|PTRH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7962646484375	2	550.795998	1099.57744	0.071682	3.9482E-05	0.27566	0.00015183	0.34734	0.00019131	550.7959780424997	32.222	0.45889	32.296	32.127	32.586	0.07378					32	23	2	0	0	0	0.4101	1	4808	4808		10.8	5.0677	1	32342			6614	5104	4449	4482	8981	8981					0.03163663566078867
HPEDTETPP	9	Unmodified	_HPEDTETPP_					0	0	0		ENSG00000132849|ENST00000642238|PATJ;ENST00000484937.5_1_1:62582831-62626723:+|nuORF	ENSG00000132849|ENST00000642238|PATJ;ENST00000484937.5_1_1:62582831-62626723:+|nuORF	ENSG00000132849|ENST00000642238|PATJ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7239685058594	2	511.724904	1021.43525	-0.1201	-6.1456E-05	-1.5564	-0.00079647	-1.6765	-0.00085793	511.7241599983308	27.97	0.38439	28.053	27.896	28.281	0.082132					40	22	2	0	0	0	0.3182	1	3611	3611		4.3292	1.7518	1	42504			6615	2601;6776	4450	4483	8982	8982					-0.07460593966766282
HPEDVEPAL	9	Unmodified	_HPEDVEPAL_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000497973.5_1_1:46032543-46034819:+|nuORF	ENSG00000117448|ENST00000351829|AKR1A1	ENSG00000117448|ENST00000351829|AKR1A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.74517822265625	2	503.745639	1005.47673	-0.30352	-0.0001529	0.25086	0.00012637	-0.052661	-2.6528E-05	503.74560377078734	40.417	0.95131	40.417	40.151	41.103	0					66	33	4	0	0	0	0.18364	1	7401	7401		20.454	2.3073	1	210470			6616	2001	4451	4484	8983	8983					-0.025794132074452136
HPEDVEPAL	9	Unmodified	_HPEDVEPAL_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000497973.5_1_1:46032543-46034819:+|nuORF	ENSG00000117448|ENST00000351829|AKR1A1	ENSG00000117448|ENST00000351829|AKR1A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.74578857421875	2	503.745639	1005.47673	-0.13815	-6.9593E-05	1.0286	0.00051817	0.89049	0.00044858	503.74563322157945	40.263	0.73748	40.352	40.164	40.902	0.089645					59	28	4	0	0	0	0.18364	2	7242	7242;7286		20.454	2.3073	1	178410			6617	2001	4451	4484	8984;8985	8984					-0.025794132074452136
HPEEGDLDL	9	Unmodified	_HPEEGDLDL_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;ENSG00000130254|ENST00000252542|SAFB2	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7325439453125	2	512.732729	1023.4509	-0.22769	-0.00011674	-0.079466	-4.0745E-05	-0.30715	-0.00015749	512.732694347977	42.861	2.1523	42.861	42.454	44.606	0					209	75	4	0	0	0	0.00022088	8	8143	8100;8143;8188;8231;8274;8323;8371;8424		136.33	92.561	1	2594500			6618	3766	4452	4485	8986;8987;8988;8989;8990;8991;8992;8993	8987					-0.05988307449695185
HPEEGDLDL	9	Unmodified	_HPEEGDLDL_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;ENSG00000130254|ENST00000252542|SAFB2	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.732666015625	2	512.732729	1023.4509	-0.1162	-5.958E-05	0.02024	1.0378E-05	-0.095961	-4.9202E-05	512.7326955641815	42.816	2.287	42.905	42.342	44.629	0.089767					236	82	5	0	0	0	0.0010022	7	7993	7945;7993;8036;8077;8122;8230;8278		123.45	79.678	1	2042300			6619	3766	4452	4485	8994;8995;8996;8997;8998;8999;9000	8995					-0.05988307449695185
HPEGLLSPHL	10	Unmodified	_HPEGLLSPHL_					0	0	0			REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF	REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2988891601562	2	550.298373	1098.58219	0.35572	0.00019575	0.063723	3.5067E-05	0.41945	0.00023082	550.2984806629282	37.405	0.56392	37.405	37.194	37.758	0					39	19	3	0	0	0	0.38912	1	6531	6531		13.042	4.8869	1	64654	+		6620	8525	4453	4486	9001	9001					0.03684547708849095
HPEGLLSPHL	10	Unmodified	_HPEGLLSPHL_					0	0	0			REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF	REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.298828125	2	550.298373	1098.58219	0.40682	0.00022387	0.40775	0.00022439	0.81457	0.00044826	550.2986019124894	37.281	0.96847	37.366	37.102	38.071	0.084476					61	33	3	0	0	0	0.34138	1	6364	6364		18.146	2.8979	1	100550	+		6621	8525	4453	4486	9002	9002					0.03684547708849095
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2980041503906	2	504.297842	1006.58113	0.1149	5.7943E-05	-0.091396	-4.6091E-05	0.023503	1.1852E-05	504.297937742201	36.568	6.215	36.568	36.208	42.423	0					562	227	5	0	0	0	0.0040167	12	6241	6199;6241;6283;6326;6369;6414;6460;6504;6551;6646;6692;7492		103.42	63.462	1	3794600			6622	4041	4454	4487	9003;9004;9005;9006;9007;9008;9009;9010;9011;9012;9013;9014	9004					0.0781033333993264
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.298095703125	2	504.297842	1006.58113	0.17784	8.9683E-05	-0.093062	-4.6931E-05	0.084775	4.2752E-05	504.297921562502	36.473	3.2692	36.555	36.159	39.428	0.081711					366	125	5	0	0	0	0.0043591	9	6126	6043;6079;6126;6168;6214;6259;6300;6340;6402		96.367	56.409	1	3878400			6623	4041	4454	4487	9015;9016;9017;9018;9019;9020;9021;9022;9023	9017					0.0781033333993264
HPELEHIIWTL	11	Unmodified	_HPELEHIIWTL_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	463.25048828125	3	463.250472	1386.72959	0.093423	4.3278E-05	-0.093365	-4.3251E-05	5.7701E-05	2.673E-08	463.2504188471417	68.692	1.6363	68.754	68.559	70.195	0.062126					169	63	5	0	0	0	0.23057	2	15907	15858;15907		25.997	12.479	1	2078300			6624	7363	4455	4488	9024;9025	9025					0.05169019522986673
HPELHEMTI	9	Unmodified	_HPELHEMTI_					0	0	0			REV__nc|ENSG00000186283|Q9H497-3|TOR3A	REV__nc|ENSG00000186283|Q9H497-3|TOR3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7686157226562	2	553.768591	1105.52263	0.0045324	2.5099E-06	0.15019	8.3169E-05	0.15472	8.5679E-05	553.7686812133269	30.003	0.94596	30.003	29.736	30.682	0					65	46	2	0	0	0	0.3354	1	4370	4370		2.0598	0	1	25899	+		6625	10700	4456	4489	9026	9026					-0.02591091296835657
HPELHEMTI	9	Unmodified	_HPELHEMTI_					0	0	0			REV__nc|ENSG00000186283|Q9H497-3|TOR3A	REV__nc|ENSG00000186283|Q9H497-3|TOR3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7554321289062	2	553.768591	1105.52263	0.11216	6.2108E-05	-0.13275	-7.3511E-05	-0.020591	-1.1402E-05	553.7686634537225	26.472	0.64813	26.564	26.417	27.065	0.091507					74	48	2	0	0	0	0.25504	1	3131	3131		4.756	0.42677	1	39396	+		6626	10700	4456	4489	9027	9027					-0.02591091296835657
HPELVEGLVL	10	Unmodified	_HPELVEGLVL_					0	0	0		nc|ENSG00000101079|Q9UGV2-3|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3165893554688	2	553.316232	1104.61791	0.5659	0.00031312	-0.31038	-0.00017174	0.25551	0.00014138	553.3160168205285	59.989	0.91124	59.989	59.758	60.669	0					82	32	4	0	0	0	0.42335	1	13453	13453		9.3831	0	1	994690			6627	1233	4457	4490	9028	9028					0.06978585165848017
HPENAAEIKL	10	Unmodified	_HPENAAEIKL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000580060.1_1_18:47022337-47022472:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7656860351562	2	561.301113	1120.58767	0.13838	7.7671E-05	0.50749	0.00028486	0.64587	0.00036253	561.3009026514759	35.212	0.67008	35.212	34.975	35.645	0					62	23	3	0	0	0	0.30844	1	5847	5847		19.362	7.7216	1	124160			6628	4599	4458	4491	9029	9029					0.03220226500661738
HPENAAEIKL	10	Unmodified	_HPENAAEIKL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000580060.1_1_18:47022337-47022472:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7655639648438	2	561.301113	1120.58767	0.22168	0.00012443	0.1212	6.8029E-05	0.34288	0.00019246	561.3008665834595	35.14	0.69215	35.219	34.933	35.625	0.078827					68	27	3	0	0	0	0.29041	1	5701	5701		27.223	10.11	1	122820			6629	4599	4458	4491	9030	9030					0.03220226500661738
HPEPGTWDSF	10	Unmodified	_HPEPGTWDSF_					0	0	0		ENST00000562941.1_1_16:29473130-29474884:+|nuORF;ENST00000562257.5_1_16:30212387-30214357:+|nuORF;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000261052|P0DMM9-3|SULT1A3	ENST00000562941.1_1_16:29473130-29474884:+|nuORF	ENST00000562941.1_1_16:29473130-29474884:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.3186645507812	2	586.753995	1171.49344	0.39765	0.00023332	-0.033569	-1.9697E-05	0.36408	0.00021362	586.754184653772	52.699	0.38727	52.699	52.484	52.872	0					18	13	2	0	0	0	0.28982	1	11136	11136		26.268	18.659	1	59280			6630	5228	4459	4492	9031	9031					-0.08544912321485754
HPEPGTWDSF	10	Unmodified	_HPEPGTWDSF_					0	0	0		ENST00000562941.1_1_16:29473130-29474884:+|nuORF;ENST00000562257.5_1_16:30212387-30214357:+|nuORF;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000261052|P0DMM9-3|SULT1A3	ENST00000562941.1_1_16:29473130-29474884:+|nuORF	ENST00000562941.1_1_16:29473130-29474884:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.3189697265625	2	586.753995	1171.49344	0.66868	0.00039235	-0.063653	-3.7349E-05	0.60503	0.000355	586.7539276575334	52.621	0.3868	52.688	52.466	52.853	0.067173					20	14	2	0	0	0	0.30896	1	11004	11004		18.146	11.941	1	80236			6631	5228	4459	4492	9032	9032					-0.08544912321485754
HPEPTDHVL	9	Unmodified	_HPEPTDHVL_					0	0	0		TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.759033203125	2	522.759081	1043.50361	-0.13312	-6.9589E-05	0.080887	4.2285E-05	-0.052231	-2.7304E-05	522.7588920835764	30.425	0.58987	30.425	30.055	30.645	0					68	30	3	0	0	0	0.25979	1	4432	4432		11.64	4.9171	1	42399			6632	2433	4460	4493	9033	9033					-0.016403045962533724
HPEPTDHVL	9	Unmodified	_HPEPTDHVL_					0	0	0		TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7589111328125	2	522.759081	1043.50361	-0.16336	-8.5396E-05	-0.083641	-4.3724E-05	-0.247	-0.00012912	522.7590063367937	30.362	0.41195	30.437	30.243	30.655	0.075403					43	25	2	0	0	0	0.25979	1	4285	4285		11.64	3.7301	1	39731			6633	2433	4460	4493	9034	9034					-0.016403045962533724
HPEPTERVV	9	Unmodified	_HPEPTERVV_					0	0	0		ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENST00000497403.5_1_2:10101229-10104576:+|nuORF;GRHL1|p.D245*|1|0.26|ENSG00000134317|chr2:9962512-9962513|-/T|frameshift_variant	ENSG00000134317|ENST00000324907|GRHL1	ENSG00000134317|ENST00000324907|GRHL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2799682617188	2	532.28018	1062.54581	-0.14915	-7.9388E-05	0.069567	3.7029E-05	-0.07958	-4.2359E-05	532.2801557540002	26.051	0.37228	26.051	25.89	26.262	0					48	28	2	0	0	0	0.32375	1	3135	3135		3.5965	1.2938	1	30817			6634	2658	4461	4494	9035	9035					0.01703670812139535
HPERWMRTL	9	Unmodified	_HPERWMRTL_					0	0	0		ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.3155517578125	2	613.316574	1224.6186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.992	1	39.992	39.492	40.492	0								0	0	0	0.29058	1	7291	7291		0.45834	0	1				6635	4363	4462	4495	9036	9036					0.015271013339315687
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2556762695312	2	543.255848	1084.49714	-0.15138	-8.2239E-05	-0.11736	-6.3757E-05	-0.26874	-0.000146	543.2557908416376	26.411	1.1916	26.411	26.152	27.344	0					188	86	4	0	0	0	0.056368	4	3248	3214;3248;3281;3322		41.956	22.699	1	216050			6636	1897	4463	4496	9037;9038;9039;9040	9038					-0.041725658192717674
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2557373046875	2	543.255848	1084.49714	-0.022846	-1.2411E-05	-0.074747	-4.0607E-05	-0.097594	-5.3018E-05	543.255790886655	26.311	1.0461	26.403	26.149	27.195	0.091507					191	82	4	0	0	0	0.14444	5	3078	3044;3078;3114;3153;3228		24.991	15.608	1	250980			6637	1897	4463	4496	9041;9042;9043;9044;9045	9042					-0.041725658192717674
HPESERISM	9	Oxidation (M)	_HPESERISM(Oxidation (M))_		HPESERISM(1)		HPESERISM(60)	0	0	1		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2533569335938	2	551.253305	1100.49206	0.30636	0.00016888	-0.29394	-0.00016203	0.012427	6.8503E-06	551.2531473765489	18.431	0.79899	18.521	18.312	19.111	0.089705					251	96	4	0	0	0	0.017478	2	1042	1042;1044		60.074	45.236	1	283850			6638	1897	4463	4497	9046;9047	9046		112			-0.054168696818805984
HPESGEVTV	9	Unmodified	_HPESGEVTV_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7298889160156	2	477.729989	953.445425	-0.40571	-0.00019382	0.33307	0.00015912	-0.072644	-3.4704E-05	477.730061407571	28.218	0.54327	28.218	28.009	28.552	0					57	28	3	0	0	0	0.26684	2	3750	3750;3794		10.824	1.4765	1	106800			6639	1195	4464	4498	9048;9049	9048					-0.03315986241500468
HPESGEVTV	9	Unmodified	_HPESGEVTV_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7297668457031	2	477.729989	953.445425	-0.39731	-0.00018981	0.3083	0.00014729	-0.089011	-4.2523E-05	477.7301022947107	28.103	0.59883	28.185	27.984	28.583	0.082132					73	35	3	0	0	0	0.26684	2	3626	3586;3626		10.824	1.4925	1	85830			6640	1195	4464	4498	9050;9051	9051					-0.03315986241500468
HPESHVLVL	9	Unmodified	_HPESHVLVL_					0	0	0		ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7877197265625	2	515.787641	1029.56073	0.090607	4.6734E-05	0.29976	0.00015461	0.39036	0.00020134	515.7877264567345	39.445	1.0972	39.445	39.162	40.26	0					79	39	3	0	0	0	0.030375	2	7102	7102;7161		50.855	6.448	1	176310			6641	2390	4465	4499	9052;9053	9052					0.04713162680127425
HPESHVLVL	9	Unmodified	_HPESHVLVL_					0	0	0		ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7876586914062	2	515.787641	1029.56073	0.20165	0.00010401	0.36865	0.00019014	0.5703	0.00029415	515.7877679881253	39.27	0.82515	39.359	39.105	39.93	0.088562					61	33	3	0	0	0	0.092418	2	6933	6933;6975		34.102	5.6156	1	165500			6642	2390	4465	4499	9054;9055	9054					0.04713162680127425
HPESKHEIL	9	Unmodified	_HPESKHEIL_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2880859375	2	545.288005	1088.56146	0.10772	5.8738E-05	-0.17936	-9.7805E-05	-0.071645	-3.9067E-05	545.2877720072045	20.535	0.28421	20.634	20.514	20.799	0.099499					52	32	2	0	0	0	0.3354	1	1521	1521		2.0598	0.73022	1	18562			6643	738	4466	4500	9056	9056					0.020719573291898996
HPESKHEIL	9	Unmodified	_HPESKHEIL_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	545.288005	1088.56146	-0.2863	-0.00015612	0.024961	1.3611E-05	-0.26134	-0.00014251	545.2879575620597	20.824	0.3226	20.824	20.629	20.952	0	0.094859	0.00011046	NaN	2.0598	44	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13932			6644	738	4466	4500							0.020719573291898996
HPESTPKSL	9	Unmodified	_HPESTPKSL_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2605285644531	2	498.261456	994.50836	0.13105	6.5298E-05	-0.035104	-1.7491E-05	0.095948	4.7807E-05	498.26131953743896	21.326	0.39713	21.428	21.254	21.651	0.10178					81	40	3	0	0	0	0.11547	1	1749	1749		29.082	8.628	1	44996			6645	1163	4467	4501	9057	9057					0.010885795465128467
HPESTPKSL	9	Unmodified	_HPESTPKSL_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	498.261456	994.50836	-0.21199	-0.00010563	0.37972	0.0001892	0.16773	8.3573E-05	498.26154840831686	21.522	0.45358	21.522	21.349	21.802	0	0.047326	0.00021191	NaN	29.082	84	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50670			6646	1163	4467	4501							0.010885795465128467
HPETRSAFL	9	Unmodified	_HPETRSAFL_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2747192382812	2	529.274898	1056.53524	-0.11161	-5.9074E-05	0.43973	0.00023274	0.32811	0.00017366	529.2751835952694	31.537	0.53507	31.537	31.236	31.772	0					38	23	2	0	0	0	0.32831	1	4722	4722		2.9952	0	1	34120			6647	3218	4468	4502	9058	9058					0.009236881576953238
HPETRSAFL	9	Unmodified	_HPETRSAFL_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2745971679688	2	529.274898	1056.53524	-0.051071	-2.7031E-05	0.28602	0.00015138	0.23495	0.00012435	529.274921566057	31.366	0.44869	31.44	31.284	31.733	0.073782					47	21	3	0	0	0	0.30757	2	4603	4582;4603		5.7319	0.141	1	41473			6648	3218	4468	4502	9059;9060	9060					0.009236881576953238
HPETSMIR	8	Unmodified	_HPETSMIR_					0	0	0		nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	nc|ENSG00000174611|Q8NBH2-3|KY	nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.740478515625	2	485.742376	969.4702	-0.10738	-5.2159E-05	-3.2474	-0.0015774	-3.3548	-0.0016295	485.740615133964	35.671	0.52	35.671	35.449	35.969	0					30	19	2	0	0	0	0.53817	1	5999	5999		2.5775	0.27475	1	43245			6649	4591	4469	4503	9061	9061					-0.015756296397967162
HPEVAPDVRL	10	Unmodified	_HPEVAPDVRL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8087158203125	2	566.809105	1131.60366	-0.61214	-0.00034696	0.36733	0.0002082	-0.24481	-0.00013876	566.8091553944207	42.031	0.44985	42.031	41.829	42.279	0					29	15	2	0	0	0	0.33926	1	7887	7887		18.373	10.218	1	87582			6650	2831	4470	4504	9062	9062					0.04311932737573443
HPEVAPDVRL	10	Unmodified	_HPEVAPDVRL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8087768554688	2	566.809105	1131.60366	-0.38839	-0.00022014	0.14488	8.2119E-05	-0.24351	-0.00013803	566.8092175378397	41.963	0.52612	42.053	41.844	42.37	0.089764					31	20	2	0	0	0	0.36848	1	7749	7749		15.248	7.093	1	85151			6651	2831	4470	4504	9063	9063					0.04311932737573443
HPEWGDEQL	9	Unmodified	_HPEWGDEQL_					0	0	0		ENST00000490885.6_1_1:186645551-186649536:-|nuORF;ENSG00000073756|ENST00000367468|PTGS2	ENST00000490885.6_1_1:186645551-186649536:-|nuORF	ENST00000490885.6_1_1:186645551-186649536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7465209960938	2	555.74617	1109.47779	0.35513	0.00019736	0.069677	3.8723E-05	0.4248	0.00023608	555.7461538052048	46.352	0.26585	46.438	46.215	46.481	0.085621					13	8	2	0	0	0	0.2125	1	9062	9062		17.113	11.381	1	120540			6652	799	4471	4505	9064	9064					-0.07257198838510703
HPEYGEVIQL	10	Unmodified	_HPEYGEVIQL_					0	0	0		ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8012084960938	2	592.800946	1183.58734	0.4338	0.00025715	0.11294	6.6951E-05	0.54673	0.0003241	592.8009101842765	57.38	1.6167	57.38	56.6	58.217	0					168	58	5	0	0	0	4.8881E-06	3	12559	12559;12601;12642		137.42	93.017	1	3282400			6653	1856	4472	4506	9065;9066;9067	9065					0.002888067808271444
HPEYGEVIQL	10	Unmodified	_HPEYGEVIQL_					0	0	0		ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8013305664062	2	592.800946	1183.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.135	1	57.204	56.704	57.704	0.068375								0	0	0	0.17707	1	12351	12351		32.786	9.6373	1				6654	1856	4472	4506	9068	9068					0.002888067808271444
HPEYGEVIQL	10	Unmodified	_HPEYGEVIQL_					0	0	0		ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8012084960938	2	592.800946	1183.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.274	1	57.343	56.843	57.843	0.068375								0	0	0	0.00036121	1	12394	12394		93.166	49.308	1				6655	1856	4472	4506	9069	9069					0.002888067808271444
HPEYGEVIQL	10	Unmodified	_HPEYGEVIQL_					0	0	0		ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8013305664062	2	592.800946	1183.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.415	1	57.483	56.983	57.983	0.068375								0	0	0	0.00019635	1	12437	12437		99.755	47.487	1				6656	1856	4472	4506	9070	9070					0.002888067808271444
HPEYGEVIQL	10	Unmodified	_HPEYGEVIQL_					0	0	0		ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	ENST00000487533.1_1_2:9411463-9411580:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.801025390625	2	592.800946	1183.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.586	1	57.654	57.154	58.154	0.068375								0	0	0	0.13664	1	12489	12489		39.95	3.8227	1				6657	1856	4472	4506	9071	9071					0.002888067808271444
HPFAPWPR	8	Unmodified	_HPFAPWPR_					0	0	0			REV__ENST00000176183.5_1_11:639911-640686:+|nuORF	REV__ENST00000176183.5_1_11:639911-640686:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.263916015625	2	504.264136	1006.51372	0.26219	0.00013221	-0.15039	-7.5835E-05	0.11181	5.638E-05	504.26394379140527	88.102	0.56207	88.132	87.823	88.385	0.030037					43	19	3	0	0	0	0.35713	1	21742	21742		14.582	14.582	1	521790	+		6658	11165	4473	4507	9072	9072					0.010723479196485641
HPFAPWPR	8	Unmodified	_HPFAPWPR_					0	0	0			REV__ENST00000176183.5_1_11:639911-640686:+|nuORF	REV__ENST00000176183.5_1_11:639911-640686:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.264136	1006.51372	0.43197	0.00021783	-0.31762	-0.00016016	0.11435	5.7663E-05	504.26386532012117	88.102	0.70575	88.102	87.855	88.56	0	-0.015194	-6.2979E-05	NaN	14.582	42	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685330	+		6659	11165	4473	4507							0.010723479196485641
HPFEDGAKL	9	Unmodified	_HPFEDGAKL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;GAK|p.R270L|1|0.24|ENSG00000178950|chr4:893942-893942|C/A|missense_variant	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7420959472656	2	507.256174	1012.49779	-0.089358	-4.5328E-05	-0.81365	-0.00041273	-0.90301	-0.00045806	507.25549877765667	33.757	0.92109	33.757	33.434	34.356	0					50	34	3	0	0	0	0.25376	1	5391	5391		6.2058	0.97511	1	38781			6660	4759	4474	4508	9073	9073					-0.007954031079066226
HPFEDGAKL	9	Unmodified	_HPFEDGAKL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;GAK|p.R270L|1|0.24|ENSG00000178950|chr4:893942-893942|C/A|missense_variant	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.74151611328125	2	507.256174	1012.49779	-0.026723	-1.3555E-05	-0.55057	-0.00027928	-0.57729	-0.00029284	507.2556940188671	33.634	0.76856	33.708	33.424	34.192	0.074322					44	31	2	0	0	0	0.25174	1	5251	5251		7.2892	3.6927	1	56855			6661	4759	4474	4508	9074	9074					-0.007954031079066226
HPFFGRVVL	9	Unmodified	_HPFFGRVVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.30859375	2	536.308544	1070.60253	0.56444	0.00030271	-0.68213	-0.00036583	-0.11769	-6.3121E-05	536.308213322301	53.897	0.90755	53.897	53.544	54.451	0					73	32	3	0	0	0	0.18364	1	11509	11509		20.454	4.3045	1	514930			6662	1954	4475	4509	9075	9075					0.07005763159327216
HPFFGRVVL	9	Unmodified	_HPFFGRVVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.308349609375	2	536.308544	1070.60253	0.71298	0.00038238	-0.59315	-0.00031811	0.11983	6.4267E-05	536.3080548199123	53.829	0.6683	53.895	53.677	54.346	0.065426					60	26	3	0	0	0	0.14091	1	11340	11340		25.399	10.561	1	496820			6663	1954	4475	4509	9076	9076					0.07005763159327216
HPFFKDMSL	9	Unmodified	_HPFFKDMSL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2761840820312	2	561.276052	1120.53755	0.24073	0.00013512	-0.16571	-9.3012E-05	0.075017	4.2105E-05	561.2761050392828	52.74	1.0274	52.74	52.424	53.451	0					84	39	3	0	0	0	0.081383	4	11168	11110;11168;11251;11267		36.506	13.77	1	452080			6664	1117	4476	4510	9077;9078;9079;9080	9078					-0.017895994288437578
HPFFKDMSL	9	Unmodified	_HPFFKDMSL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2764892578125	2	561.276052	1120.53755	0.43471	0.00024399	-0.32511	-0.00018247	0.10961	6.1519E-05	561.2760097408291	52.748	1.0293	52.815	52.438	53.468	0.067169					84	44	3	0	0	0	0.048027	3	11030	10975;11030;11073		43.772	14.76	1	465690			6665	1117	4476	4510	9081;9082;9083	9082					-0.017895994288437578
HPFFKDMSL	9	Oxidation (M)	_HPFFKDM(Oxidation (M))SL_		HPFFKDM(1)SL		HPFFKDM(48)SL	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2731323242188	2	569.273509	1136.53247	-0.4059	-0.00023107	-0.10883	-6.1955E-05	-0.51473	-0.00029302	569.2733785575424	41.644	1.44	41.733	41.494	42.934	0.089764					148	56	4	0	0	0	0.03472	1	7709	7709		47.749	23.728	1	630060			6666	1117	4476	4511	9084	9084		61			-0.03033903291475326
HPFFKDMSL	9	Oxidation (M)	_HPFFKDM(Oxidation (M))SL_		HPFFKDM(1)SL		HPFFKDM(44)SL	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2733154296875	2	569.273509	1136.53247	-0.009089	-5.1741E-06	0.062266	3.5446E-05	0.053177	3.0272E-05	569.2735236816048	44.317	2.9765	44.406	43.453	46.43	0.088924					263	110	4	0	0	0	0.048027	1	8434	8434		43.772	22.026	1	604300			6667	1117	4476	4511	9085	9085		61			-0.03033903291475326
HPFFNDFTF	9	Unmodified	_HPFFNDFTF_					0	0	0		ENSG00000149418|ENST00000278742|ST14;APLP2-ST14|1|fusion;APLP2-ST14|2|fusion	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.264404296875	2	586.263999	1170.51345	0.68483	0.00040149	-0.26164	-0.00015339	0.4232	0.0002481	586.2637553304542	74.896	0.97627	74.896	74.527	75.504	0					92	36	4	0	0	0	0.0014903	4	17884	17840;17884;17934;18001		118.89	77.055	1	991090			6668	3402	4477	4512	9086;9087;9088;9089	9087					-0.06499116590862286
HPFFNDFTF	9	Unmodified	_HPFFNDFTF_					0	0	0		ENSG00000149418|ENST00000278742|ST14;APLP2-ST14|1|fusion;APLP2-ST14|2|fusion	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2643432617188	2	586.263999	1170.51345	0.75561	0.00044299	0.048801	2.861E-05	0.80441	0.0004716	586.264156118177	74.909	0.98907	74.953	74.536	75.525	0.044037					94	35	4	0	0	0	0.006264	4	17713	17665;17713;17760;17807		78.728	53.329	1	897400			6669	3402	4477	4512	9090;9091;9092;9093	9091					-0.06499116590862286
HPFHILIAL	9	Unmodified	_HPFHILIAL_					0	0	0		nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60	nc|ENSG00000116747|P10155-3|RO60	nc|ENSG00000116747|P10155-3|RO60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.8189086914062	2	530.818744	1059.62294	0.64225	0.00034092	-0.2369	-0.00012575	0.40535	0.00021517	530.818534713173	65.159	0.95565	65.159	64.897	65.853	0					82	34	3	0	0	0	0.02311	5	14960	14911;14960;15007;15053;15102		56.048	19.582	1	872910			6670	1973	4478	4513	9094;9095;9096;9097;9098	9095					0.09550933819127749
HPFHILIAL	9	Unmodified	_HPFHILIAL_					0	0	0		nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60	nc|ENSG00000116747|P10155-3|RO60	nc|ENSG00000116747|P10155-3|RO60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8187255859375	2	530.818744	1059.62294	0.53637	0.00028472	-0.14963	-7.9424E-05	0.38675	0.00020529	530.8185928217047	65.126	0.92308	65.195	64.867	65.79	0.068916					74	35	3	0	0	0	0.0099253	4	14752	14752;14795;14847;14907		67.413	21.663	1	840410			6671	1973	4478	4513	9099;9100;9101;9102	9099					0.09550933819127749
HPFHLSDRE	9	Unmodified	_HPFHLSDRE_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2733764648438	2	569.275429	1136.53631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.839	1	46.839	46.339	47.339	0								0	0	0	0.24978	1	9359	9359		9.3831	2.0939	1		+		6672	9298	4479	4514	9103	9103					-0.026500974733835392
HPFIKEYQA	9	Unmodified	_HPFIKEYQA_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010490-19010792:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.792724609375	2	566.792924	1131.57129	-0.061526	-3.4872E-05	-0.49925	-0.00028297	-0.56078	-0.00031785	566.7922909312598	33.26	0.75069	33.335	32.914	33.665	0.074322					59	29	3	0	0	0	0.27929	2	5118	5118;5164		9.3831	4.1525	1	70884			6673	1482	4480	4515	9104;9105	9104					0.01077145334556917
HPFIKTHEI	9	Unmodified	_HPFIKTHEI_					0	0	0			REV__ZNF639|p.I448Rfs*8|1|0.05|ENSG00000121864|chr3:179334306-179334307|-/GGAACTTTTTTTTT|frameshift_variant	REV__ZNF639|p.I448Rfs*8|1|0.05|ENSG00000121864|chr3:179334306-179334307|-/GGAACTTTTTTTTT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7835083007812	2	561.308741	1120.60293	0.71087	0.00039902	1.2917	0.00072504	2.0026	0.0011241	561.810783964521	54.725	0.3956	54.79	54.612	55.007	0.065128					30	17	3	0	0	0	0.25699	1	11580	11580		3.5965	0.31518	1	86571	+		6674	8906	4481	4516	9106	9106					0.047451380885149774
HPFKDLVQL	9	Unmodified	_HPFKDLVQL_					0	0	0		nc|ENSG00000113615|O95486-2|SEC24A;ENSG00000113615|ENST00000398844|SEC24A	nc|ENSG00000113615|O95486-2|SEC24A	nc|ENSG00000113615|O95486-2|SEC24A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.8114013671875	2	548.811116	1095.60768	0.34202	0.00018771	-0.20842	-0.00011438	0.1336	7.3323E-05	548.8110121580227	52.176	0.30015	52.243	52.058	52.358	0.067173					19	11	2	0	0	0	0.14444	1	10833	10833		24.991	2.2547	1	82123			6675	1810	4482	4517	9107	9107					0.06370022231271832
HPFKDLVQL	9	Unmodified	_HPFKDLVQL_					0	0	0		nc|ENSG00000113615|O95486-2|SEC24A;ENSG00000113615|ENST00000398844|SEC24A	nc|ENSG00000113615|O95486-2|SEC24A	nc|ENSG00000113615|O95486-2|SEC24A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	548.811116	1095.60768	0.23745	0.00013031	-0.31892	-0.00017503	-0.081475	-4.4714E-05	548.8108762634885	52.175	0.46063	52.175	52.043	52.504	0	-0.034045	-4.4068E-05	NaN	24.991	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95828			6676	1810	4482	4517							0.06370022231271832
HPFLAWFF	8	Unmodified	_HPFLAWFF_					0	0	0		nc|ENSG00000182871|P39060|COL18A1	nc|ENSG00000182871|P39060|COL18A1	nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.3189086914062	2	532.771263	1063.52797	0.41934	0.00022341	-3.5673	-0.0019006	-3.148	-0.0016772	532.7691877016597	71.43	0.72558	71.43	71.001	71.726	0					37	24	2	0	0	0	0.35256	1	16825	16825		17.087	1.2394	1	130670			6677	7569	4483	4518	9108	9108					-0.0012499965207553032
HPFPDHEL	8	Unmodified	_HPFPDHEL_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;VPS53-ABR|1|fusion;EWSR1-ABR|1|fusion	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2352294921875	2	496.235242	990.45593	0.19335	9.5948E-05	-0.061305	-3.0421E-05	0.13205	6.5527E-05	496.23507715380435	34.949	0.85407	34.949	34.595	35.449	0					48	31	2	0	0	0	0.52502	1	5794	5794		9.3474	0	1	49022			6678	3743	4484	4519	9109	9109					-0.03967958796442872
HPFPDHEL	8	Unmodified	_HPFPDHEL_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;VPS53-ABR|1|fusion;EWSR1-ABR|1|fusion	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.23492431640625	2	496.235242	990.45593	0.19796	9.8236E-05	0.055258	2.7421E-05	0.25322	0.00012566	496.23511100337294	34.785	0.74404	34.861	34.592	35.336	0.076244					66	32	3	0	0	0	0.42348	2	5604	5604;5653		23.148	5.0134	1	51742			6679	3743	4484	4519	9110;9111	9110					-0.03967958796442872
HPGAREPPGYR	11	Unmodified	_HPGAREPPGYR_					0	0	0		COL9A3|p.G578E|1|0.41|ENSG00000092758|chr20:62837212-62837212|G/A|missense_variant	COL9A3|p.G578E|1|0.41|ENSG00000092758|chr20:62837212-62837212|G/A|missense_variant	COL9A3|p.G578E|1|0.41|ENSG00000092758|chr20:62837212-62837212|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.316650390625	2	618.815253	1235.61595	-0.44928	-0.00027802	-0.17512	-0.00010837	-0.6244	-0.00038639	618.8151432178847	31.056	0.21842	31.13	31.026	31.244	0.07378					18	11	2	0	0	0	0.41369	1	4477	4477		1.1933	0.66858	1	18548			6680	204	4485	4520	9112	9112					0.007569692006200057
HPGDGLAHLAL	11	Unmodified	_HPGDGLAHLAL_					0	0	0		ENST00000602351.5_1_19:49645338-49651464:+|nuORF	ENST00000602351.5_1_19:49645338-49651464:+|nuORF	ENST00000602351.5_1_19:49645338-49651464:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7959594726562	2	550.795998	1099.57744	0.40288	0.0002219	-0.060886	-3.3536E-05	0.34199	0.00018837	550.7958988497368	38.001	1.7042	38.001	37.675	39.379	0					140	58	4	0	0	0	0.31637	1	6860	6860		16.149	2.5342	1	739240			6681	7299	4486	4521	9113	9113					0.031636635660561296
HPGDGLAHLAL	11	Unmodified	_HPGDGLAHLAL_					0	0	0		ENST00000602351.5_1_19:49645338-49651464:+|nuORF	ENST00000602351.5_1_19:49645338-49651464:+|nuORF	ENST00000602351.5_1_19:49645338-49651464:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7955322265625	2	550.795998	1099.57744	0.46423	0.0002557	-0.052644	-2.8996E-05	0.41159	0.0002267	550.7959320504665	37.872	1.3535	37.956	37.684	39.038	0.084476					140	49	4	0	0	0	0.39569	1	6685	6685		5.2969	0.39987	1	719760			6682	7299	4486	4521	9114	9114					0.031636635660561296
HPGFWRHHC	9	Unmodified	_HPGFWRHHC_					0	0	0		ENST00000538502.5_2_1:109869643-109869715:-|nuORF	ENST00000538502.5_2_1:109869643-109869715:-|nuORF	ENST00000538502.5_2_1:109869643-109869715:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7669067382812	2	588.767052	1175.51955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.97	1	20.065	19.565	20.565	0.095232								0	0	0	0.29525	1	1393	1393		0	0	1				6683	7052	4487	4522	9115	9115					-0.06118876840309895
HPGGPLTDPPN	11	Unmodified	_HPGGPLTDPPN_					0	0	0		ENST00000587176.5_1_19:55666069-55669122:-|nuORF	ENST00000587176.5_1_19:55666069-55669122:-|nuORF	ENST00000587176.5_1_19:55666069-55669122:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7552490234375	2	551.269813	1100.52507	0.28824	0.0001589	0.41099	0.00022657	0.69923	0.00038546	551.2700685962163	35.326	0.87952	35.405	35.199	36.078	0.078827					77	33	3	0	0	0	0.36299	1	5848	5848		10.8	0.72558	1	297720			6684	7242	4488	4523	9116	9116					-0.021169195675156516
HPGLDVDAGQP	11	Unmodified	_HPGLDVDAGQP_					0	0	0		nc|ENSG00000204498|Q9UBC1-2|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1;ENSG00000204498|ENST00000376148|NFKBIL1	nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.267333984375	2	553.26727	1104.51999	0.098552	5.4526E-05	-0.23277	-0.00012879	-0.13422	-7.426E-05	553.2670139821189	30.172	2.0934	30.247	29.104	31.198	0.075403					168	124	2	0	0	0	0.40693	1	4326	4326		2.7352	0.89096	1	36098			6685	5474	4489	4524	9117	9117					-0.028092234301539065
HPGPETEIH	9	Unmodified	_HPGPETEIH_					0	0	0			REV__ENST00000321867.5_1_12:132405934-132406579:+|nuORF	REV__ENST00000321867.5_1_12:132405934-132406579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7428894042969	2	508.743431	1015.47231	0.086982	4.4252E-05	-0.2158	-0.00010979	-0.12882	-6.5536E-05	508.7430398159803	35.61	1.0131	35.61	35.389	36.402	0					61	38	3	0	0	0	0.22344	1	6009	6009		15.847	0	1	138380	+		6686	11399	4490	4525	9118	9118					-0.0348087763032936
HPGQGGTSYVV	11	Unmodified	_HPGQGGTSYVV_					0	0	0			REV__ENSG00000183801|ENST00000329293|OLFML1	REV__ENSG00000183801|ENST00000329293|OLFML1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7550048828125	2	551.269813	1100.52507	0.21801	0.00012018	0.50381	0.00027774	0.72183	0.00039792	551.2700683100833	35.437	1.5464	35.437	35.205	36.751	0					121	58	4	0	0	0	0.36299	1	5971	5971		10.8	0.72558	1	291640	+		6687	10612	4491	4526	9119	9119					-0.021169195675156516
HPGQGGTSYVV	11	Unmodified	_HPGQGGTSYVV_					0	0	0			REV__ENSG00000183801|ENST00000329293|OLFML1	REV__ENSG00000183801|ENST00000329293|OLFML1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7547607421875	2	551.269813	1100.52507	0.28824	0.0001589	0.41099	0.00022657	0.69923	0.00038546	551.2700685962163	35.326	0.87952	35.405	35.199	36.078	0.078827					77	33	3	0	0	0	0.32422	1	5878	5878		15.248	1.3424	1	297720	+		6688	10612	4491	4526	9120	9120					-0.021169195675156516
HPGSLSLWEP	10	Unmodified	_HPGSLSLWEP_					0	0	0		ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENST00000579572.1_1_17:80193878-80195110:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7843627929688	2	561.782556	1121.55056	0.64	0.00035954	0.76423	0.00042933	1.4042	0.00078887	561.7830178037251	54.465	1.4249	54.465	53.987	55.411	0					119	57	3	0	0	0	0.45627	1	11564	11564		3.5965	3.5965	1	334230			6689	7213	4492	4527	9121	9121					-0.005354450451022785
HPGVWRLWP	9	Unmodified	_HPGVWRLWP_					0	0	0		ENST00000374358.4_1_1:25664819-25664873:+|nuORF	ENST00000374358.4_1_1:25664819-25664873:+|nuORF	ENST00000374358.4_1_1:25664819-25664873:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.291748046875	2	574.311618	1146.60868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.982	1	38.982	38.482	39.482	0								0	0	0	0.28527	1	6985	6985		2.0598	0.40713	1				6690	6233	4493	4528	9122	9122					0.041242813908411335
HPHAVNEIAL	10	Unmodified	_HPHAVNEIAL_					0	0	0		FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3	FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7962036132812	2	550.795998	1099.57744	0.40288	0.0002219	-0.060886	-3.3536E-05	0.34199	0.00018837	550.7958988497368	38.001	1.7042	38.001	37.675	39.379	0					140	58	4	0	0	0	0.06541	2	6717	6674;6717		53.404	11.908	1	739240			6691	3799;3667	4494	4529	9123;9124	9124					0.031636635660561296
HPHAVNEIAL	10	Unmodified	_HPHAVNEIAL_					0	0	0		FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3	FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7962646484375	2	550.795998	1099.57744	0.46423	0.0002557	-0.052644	-2.8996E-05	0.41159	0.0002267	550.7959320504665	37.872	1.3535	37.956	37.684	39.038	0.084476					140	49	4	0	0	0	0.17573	2	6539	6496;6539		36.506	7.4246	1	719760			6692	3799;3667	4494	4529	9125;9126	9126					0.031636635660561296
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(85)	0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7892456054688	2	545.789327	1089.5641	-0.15108	-8.2458E-05	-0.091286	-4.9823E-05	-0.24237	-0.00013228	545.7891740194261	44.398	1.272	44.398	44.116	45.388	0					92	44	4	0	0	0	0.0046476	3	8625	8577;8625;8676		85.357	53.051	1	506500			6693	7453	4495	4530	9127;9128;9129	9128		331			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(100)	0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7892456054688	2	545.789327	1089.5641	0.068057	3.7145E-05	0.030116	1.6437E-05	0.098173	5.3582E-05	545.7892848961201	46.357	1.0373	46.357	45.53	46.567	0					86	39	3	0	0	0	0.0037915	3	9191	9140;9191;9240		104.8	72.494	1	362910			6694	7453	4495	4530	9130;9131;9132	9131		331			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(64)	0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7894897460938	2	545.789327	1089.5641	0.29979	0.00016362	0.061085	3.334E-05	0.36088	0.00019696	545.7893578623813	46.669	1.5848	46.669	46.574	48.159	0					98	63	2	0	0	0	0.012597	1	9337	9337		63.563	31.257	1	316110			6695	7453	4495	4530	9133	9133		331			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(89)	0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7891845703125	2	545.789327	1089.5641	0.022313	1.2178E-05	-0.13666	-7.4586E-05	-0.11434	-6.2407E-05	545.7892062904448	44.232	1.2388	44.321	44.064	45.303	0.088924					95	44	4	0	0	0	0.004541	3	8461	8413;8461;8506		89.427	57.121	1	413340			6696	7453	4495	4530	9134;9135;9136	9135		331			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(82)	0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.789306640625	2	545.789327	1089.5641	0.088357	4.8224E-05	0.20658	0.00011275	0.29494	0.00016097	545.7893983775831	46.094	1.0515	46.179	45.475	46.527	0.085621					85	40	3	0	0	0	0.0052492	3	9040	8952;8997;9040		81.864	49.559	1	329950			6697	7453	4495	4530	9137;9138;9139	9139		331			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(71)	0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7898559570312	2	545.789327	1089.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.478	1	46.564	46.064	47.064	0.085617								0	0	0	0.0060266	1	9123	9123		70.716	34.671	1				6698	7453	4495	4530	9140	9140		331			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_					0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.789327	1089.5641	0.25273	0.00013794	0.21492	0.0001173	0.46766	0.00025524	545.7893931163543	46.611	0.72119	46.694	46.627	47.348	0.083096	0.012546	8.7882E-05	NaN	63.563	55	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122810			6699	7453	4495	4530				331			0.022900894624626744
HPHFVIPYRC	10	Unmodified	_HPHFVIPYRC_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.2940673828125	2	634.821492	1267.62843	0.16626	0.00010555	-3.2895	-0.0020883	-3.1233	-0.0019827	634.8189166932111	95.941	0.39322	95.941	95.654	96.048	0					30	20	2	0	0	0	0.31834	1	24231	24231		1.6526	0.45928	1	61661			6700	3093	4496	4531	9141	9141					0.005322893392985861
HPHPGEAFL	9	Unmodified	_HPHPGEAFL_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2564392089844	2	502.751059	1003.48756	0.16839	8.4661E-05	-0.53484	-0.00026889	-0.36644	-0.00018423	502.750597559336	36.072	0.17715	36.154	36.081	36.259	0.081715					9	6	2	0	0	0	0.2446	1	5973	5973		11.64	4.3511	1	18378			6701	4858	4497	4532	9142	9142					-0.014039660424828071
HPHPRGPLL	9	Unmodified	_HPHPRGPLL_					0	0	0			REV__ENST00000483002.1_1_16:524982-539001:+|nuORF	REV__ENST00000483002.1_1_16:524982-539001:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2951049804688	2	512.295968	1022.57738	0.045855	2.3491E-05	-1.1222	-0.00057489	-1.0763	-0.0005514	512.2952267471586	33.907	0.50803	33.983	33.828	34.336	0.076248					39	20	3	0	0	0	0.3182	1	5335	5335		4.3292	0.73274	1	55199	+		6702	8306	4498	4533	9143	9143					0.0669970835674576
HPHSWPWQVSL	11	Unmodified	_HPHSWPWQVSL_					0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.9103698730469	3	458.563161	1372.66765	0.22883	0.00010493	0.0095585	4.3832E-06	0.23839	0.00010932	458.89749445800226	62.278	0.85559	62.352	62.029	62.884	0.073318					63	29	3	0	0	0	0.31087	1	13967	13967		2.8433	1.101	1	285130			6703	2174	4499	4534	9144	9144					-0.0037728710549345124
HPHSWPWQVSL	11	Unmodified	_HPHSWPWQVSL_					0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	458.563161	1372.66765	0.48975	0.00022458	-0.15848	-7.2674E-05	0.33127	0.00015191	458.56306598101304	62.445	0.78617	62.445	62.096	62.883	0	0.046828	-9.5997E-05	NaN	2.8433	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195720			6704	2174	4499	4534							-0.0037728710549345124
HPHSYCPL	8	Unmodified	_HPHSYCPL_					0	0	0		ENST00000464749.5_1_9:116152961-116155786:-|nuORF;ENST00000468504.5_1_9:116152961-116155869:-|nuORF	ENST00000464749.5_1_9:116152961-116155786:-|nuORF	ENST00000464749.5_1_9:116152961-116155786:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2559814453125	2	477.218537	952.422522	-0.37363	-0.0001783	0.52066	0.00024847	0.14703	7.0164E-05	477.2187695682373	31.769	0.35426	31.769	31.622	31.977	0					24	14	2	0	0	0	0.3576	1	4858	4858		2.5775	2.5775	1	42059			6705	6629	4500	4535	9145	9145					-0.05559283840000262
HPHSYCPL	8	Unmodified	_HPHSYCPL_					0	0	0		ENST00000464749.5_1_9:116152961-116155786:-|nuORF;ENST00000468504.5_1_9:116152961-116155869:-|nuORF	ENST00000464749.5_1_9:116152961-116155786:-|nuORF	ENST00000464749.5_1_9:116152961-116155786:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	477.218537	952.422522	-0.34496	-0.00016462	0.64157	0.00030617	0.29661	0.00014155	477.21879170284456	31.715	0.42213	31.789	31.578	32	0.073782	0.0097308	6.621E-05	NaN	2.5775	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46364			6706	6629	4500	4535							-0.05559283840000262
HPHTRKFT	8	Unmodified	_HPHTRKFT_					0	0	0		nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF;nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6	nc|ENSG00000186976|Q5THR3-6|EFCAB6	nc|ENSG00000186976|Q5THR3-6|EFCAB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2769775390625	2	512.277775	1022.541	0.076161	3.9016E-05	-1.3978	-0.00071604	-1.3216	-0.00067702	512.2769947186017	21.542	0.27962	21.643	21.531	21.811	0.10178					46	28	2	0	0	0	0.54081	1	1766	1766		0.79363	0	1	22813			6707	5102	4501	4536	9146	9146					0.03062831460022153
HPICTSFTKS	10	Unmodified	_HPICTSFTKS_					0	0	0			REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2747192382812	2	560.776416	1119.53828	-0.052544	-2.9465E-05	0.4791	0.00026867	0.42656	0.0002392	560.7767056000438	32.027	1.5852	32.027	31.133	32.718	0					99	71	2	0	0	0	0.31731	1	4943	4943		6.2058	2.6093	1	50250	+		6708	10897	4502	4537	9147	9147					-0.01670804779791979
HPIDIETSV	9	Unmodified	_HPIDIETSV_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;DIP2B|p.R1485Q|1|0.42|ENSG00000066084|chr12:50741515-50741515|G/A|missense_variant;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7607727050781	2	505.761289	1009.50803	-0.098544	-4.984E-05	-0.26206	-0.00013254	-0.36061	-0.00018238	505.7611104388675	46.054	0.54385	46.054	45.84	46.384	0					40	18	3	0	0	0	0.2229	1	9116	9116		19.257	7.0163	1	80907			6709	694;3453	4503	4538	9148	9148					0.0036515982667424396
HPIDIETSV	9	Unmodified	_HPIDIETSV_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;DIP2B|p.R1485Q|1|0.42|ENSG00000066084|chr12:50741515-50741515|G/A|missense_variant;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7624816894531	2	505.761289	1009.50803	0.0099915	5.0533E-06	-0.14743	-7.4564E-05	-0.13744	-6.9511E-05	505.7612183939111	45.975	0.54016	46.06	45.853	46.393	0.085617					31	19	2	0	0	0	0.14091	3	8955	8955;8960;9012		25.399	12.357	1	80640			6710	694;3453	4503	4538	9149;9150;9151	9149					0.0036515982667424396
HPIDQSLVVH	10	Unmodified	_HPIDQSLVVH_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.80908203125	2	572.809105	1143.60366	0.025907	1.484E-05	-0.070038	-4.0118E-05	-0.044131	-2.5278E-05	572.8089869503764	45.035	0.43312	45.122	44.964	45.397	0.087543					29	16	3	0	0	0	0.45794	1	8735	8735		3.2813	0.28607	1	58269	+		6711	8932	4504	4539	9152	9152					0.03759932737557392
HPIETLVDIF	10	Unmodified	_HPIETLVDIF_					0	0	0		nc|ENSG00000112715|P15692-10|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3215942382812	2	592.321514	1182.62847	0.31964	0.00018933	-0.17572	-0.00010408	0.14392	8.5249E-05	592.3213535211427	77.651	1.1748	77.651	77.365	78.54	0					106	41	4	0	0	0	0.055325	4	18719	18719;18775;18781;18828		56.177	32.156	1	1963000			6712	1775	4505	4540	9153;9154;9155;9156	9153					0.04446567820264136
HPIETLVDIF	10	Unmodified	_HPIETLVDIF_					0	0	0		nc|ENSG00000112715|P15692-10|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.321533203125	2	592.321514	1182.62847	0.4692	0.00027792	-0.34599	-0.00020494	0.12321	7.2978E-05	592.3213035000834	77.61	1.0921	77.645	77.417	78.509	0.034485					104	37	4	0	0	0	0.055325	4	18591	18548;18591;18619;18665		56.177	32.156	1	1822300			6713	1775	4505	4540	9157;9158;9159;9160	9158					0.04446567820264136
HPIKQVDVL	9	Unmodified	_HPIKQVDVL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.8110961914062	2	524.811116	1047.60768	0.17822	9.3531E-05	-0.17334	-9.0969E-05	0.0048827	2.5625E-06	524.8109372329973	36.476	1.8702	36.476	36.231	38.101	0					152	69	4	0	0	0	0.017478	3	6232	6188;6232;6277		60.074	30.992	1	486500			6714	1577	4506	4541	9161;9162;9163	9162					0.08578022231290561
HPIKQVDVL	9	Unmodified	_HPIKQVDVL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8111572265625	2	524.811116	1047.60768	0.10706	5.6186E-05	0.019319	1.0139E-05	0.12638	6.6324E-05	524.8110383016989	36.361	0.97364	36.443	36.209	37.182	0.081711					107	39	4	0	0	0	0.03918	2	6090	6090;6138		45.7	21.036	1	500120			6715	1577	4506	4541	9164;9165	9164					0.08578022231290561
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENST00000470043.1_1_10:103792731-103793132:-|nuORF;ENSG00000120029|ENST00000370033|ARMH3	ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENST00000470043.1_1_10:103792731-103793132:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8111572265625	2	509.811451	1017.60835	0.29091	0.00014831	-0.36426	-0.0001857	-0.073352	-3.7396E-05	509.8111401154498	37.894	0.95722	37.894	37.7	38.657	0					55	32	3	0	0	0	0.23216	1	6656	6656		14.838	4.0143	1	128650			6716	2104	4507	4542	9166	9166					0.10024861670990504
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENST00000470043.1_1_10:103792731-103793132:-|nuORF;ENSG00000120029|ENST00000370033|ARMH3	ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENST00000470043.1_1_10:103792731-103793132:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.81158447265625	2	509.811451	1017.60835	0.30453	0.00015525	-0.3018	-0.00015386	0.0027291	1.3913E-06	509.81124904799435	37.747	0.69989	37.831	37.628	38.328	0.084476					55	24	3	0	0	0	0.23216	1	6478	6478		14.838	4.0143	1	112980			6717	2104	4507	4542	9167	9167					0.10024861670990504
HPISSEELL	9	Unmodified	_HPISSEELL_					0	0	0		nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1	nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-5|ETS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7683715820312	2	512.769114	1023.52368	0.21131	0.00010835	-0.52271	-0.00026803	-0.3114	-0.00015967	512.7686998228112	46.593	1.1151	46.593	46.321	47.436	0					93	51	2	0	0	0	0.030375	3	9273	9273;9290;9379		50.855	20.63	1	1247900			6718	2702	4508	4543	9168;9169;9170	9168					0.01285446343717922
HPISSEELL	9	Unmodified	_HPISSEELL_					0	0	0		nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1	nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-5|ETS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7689208984375	2	512.769114	1023.52368	0.19126	9.8074E-05	-0.58695	-0.00030097	-0.39568	-0.00020289	512.7687421597426	46.508	1.1028	46.592	46.303	47.405	0.083847					98	54	2	0	0	0	0.092418	1	9114	9114		34.102	10.954	1	1115200			6719	2702	4508	4543	9171	9171					0.01285446343717922
HPKAPPSYRES	11	Unmodified	_HPKAPPSYRES_					0	0	0		TMEM252|p.E142K|1|0.34|ENSG00000181778|chr9:68537348-68537348|C/T|missense_variant	TMEM252|p.E142K|1|0.34|ENSG00000181778|chr9:68537348-68537348|C/T|missense_variant	TMEM252|p.E142K|1|0.34|ENSG00000181778|chr9:68537348-68537348|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8104248046875	2	634.822744	1267.63093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.504	1	70.504	70.004	71.004	0								0	0	0	0.29341	1	16559	16559		15.248	0.41021	1				6720	13433	4509	4544	9172	9172					0.007824162779115795
HPKFQTLE	8	Unmodified	_HPKFQTLE_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2825927734375	2	500.266542	998.51853	0.34714	0.00017366	0.034265	1.7142E-05	0.3814	0.0001908	500.266575562062	38.047	0.87426	38.047	37.783	38.657	0					62	29	3	0	0	0	0.53118	1	6780	6780		7.2892	1.0834	1	85750			6721	907	4510	4545	9173	9173					0.01921187271773306
HPKLGLIHCM	10	Unmodified	_HPKLGLIHCM_					0	0	0			REV__ENSG00000001561|ENST00000321037|ENPP4	REV__ENSG00000001561|ENST00000321037|ENPP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.80859375	2	574.806996	1147.59944	0.053457	3.0727E-05	2.6245	0.0015086	2.678	0.0015393	574.808609046126	39.74	0.38371	39.829	39.634	40.018	0.088562					29	13	3	0	0	0	0.46554	1	7128	7128		1.8442	0.19162	1	62156	+		6722	7920	4511	4546	9174	9174					0.03154428718653435
HPKPKVVWM	9	Unmodified	_HPKPKVVWM_					0	0	0		ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7656860351562	2	561.318054	1120.62156	0.14563	8.1743E-05	1.1736	0.00065874	1.3192	0.00074048	561.3183703215407	35.322	0.29907	35.322	35.18	35.479	0					20	10	3	0	0	0	0.25809	1	5847	5847		2.3027	0.24298	1	30779			6723	985	4512	4547	9175	9175					0.06606976458715508
HPKSTEYTF	9	Unmodified	_HPKSTEYTF_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|150|3|sense;nc|ENSG999|O00370|L1_ORF2	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2582397460938	2	555.266739	1108.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.642	1	49.719	49.219	50.219	0.076607								0	0	0	0.23884	1	10073	10073		11.64	2.2929	1				6724	7395	4513	4548	9176	9176					-0.03099437799073712
HPLDRDYQL	9	Unmodified	_HPLDRDYQL_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.28564453125	2	578.790912	1155.56727	0.18994	0.00010994	0.41233	0.00023865	0.60227	0.00034859	578.7909931861442	38.636	4.7442	38.636	37.194	41.938	0					318	171	4	0	0	0	0.25458	1	6536	6536		5.7319	0	1	440870			6725	539	4514	4549	9177	9177					-0.004289441591481591
HPLEDRNTI	9	Unmodified	_HPLEDRNTI_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7830200195312	2	547.783087	1093.55162	-0.11301	-6.1908E-05	-0.044463	-2.4356E-05	-0.15748	-8.6263E-05	547.7830960565732	27.326	0.33201	27.326	27.139	27.471	0					39	20	3	0	0	0	0.30757	1	3538	3538		5.7319	1.4026	1	48988			6726	1574	4515	4550	9178	9178					0.008587693238041538
HPLEDRNTI	9	Unmodified	_HPLEDRNTI_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7833251953125	2	547.783087	1093.55162	-0.056158	-3.0762E-05	0.053536	2.9326E-05	-0.0026225	-1.4366E-06	547.783202050338	27.235	0.29706	27.322	27.117	27.414	0.0867					36	20	2	0	0	0	0.30757	1	3336	3336		5.7319	0.83484	1	44664			6727	1574	4515	4550	9179	9179					0.008587693238041538
HPLEDYQS	8	Unmodified	_HPLEDYQS_					0	0	0			REV__ENST00000561204.5_1_19:47909736-47921444:-|nuORF	REV__ENST00000561204.5_1_19:47909736-47921444:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.77471923828125	2	494.722164	987.429775	-0.17195	-8.507E-05	-0.90373	-0.00044709	-1.0757	-0.00053216	494.72222319660415	40.75	0.22847	40.75	40.623	40.852	0					10	7	2	0	0	0	0.3576	1	7544	7544		2.5775	1.7838	1	13854	+		6728	12484	4516	4551	9180	9180					-0.06444272758562875
HPLEFSPTGR	10	Unmodified	_HPLEFSPTGR_					0	0	0		ENST00000555168.1_1_X:119271017-119378716:-|nuORF	ENST00000555168.1_1_X:119271017-119378716:-|nuORF	ENST00000555168.1_1_X:119271017-119378716:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7945556640625	2	570.793455	1139.57236	0.18103	0.00010333	0.056238	3.21E-05	0.23727	0.00013543	570.7934834373119	38.606	2.2299	38.606	38.332	40.562	0					147	81	4	0	0	0	0.46083	1	7090	7090		2.7352	0.23671	1	258260			6729	7121	4517	4552	9181	9181					0.008153597034834092
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A	ENST00000571676.5_1_16:11858892-11864657:-|nuORF	ENST00000571676.5_1_16:11858892-11864657:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.759521484375	2	516.759081	1031.50361	-0.092454	-4.7777E-05	-0.90546	-0.0004679	-0.99791	-0.00051568	516.758587758192	28.209	0.51904	28.209	27.859	28.378	0					42	28	2	0	0	0	0.12809	1	3761	3761		26.884	5.137	1	59285			6730	2177	4518	4553	9182	9182					-0.010883045962373217
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A	ENST00000571676.5_1_16:11858892-11864657:-|nuORF	ENST00000571676.5_1_16:11858892-11864657:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7595825195312	2	516.759081	1031.50361	-0.098522	-5.0912E-05	0.64345	0.00033251	0.54493	0.0002816	516.759556906644	28.128	0.4243	28.21	27.952	28.376	0.082132					46	24	3	0	0	0	0.22344	2	3604	3604;3647		15.847	4.2069	1	47744			6731	2177	4518	4553	9183;9184	9183					-0.010883045962373217
HPLEILQAQ	9	Unmodified	_HPLEILQAQ_					0	0	0		ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8110961914062	2	524.792924	1047.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.267	1	36.348	35.848	36.848	0.081715								0	0	0	0.25361	1	6046	6046		8.5933	0.68312	1				6732	4328	4519	4554	9185	9185					0.049411453345555856
HPLFLFDMS	9	Unmodified	_HPLFLFDMS_					0	0	0			REV__ENST00000350796.7_1_7:6202866-6203295:-|nuORF	REV__ENST00000350796.7_1_7:6202866-6203295:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.1952514648438	2	553.770603	1105.52665	-0.04194	-2.3225E-05	0.20399	0.00011297	0.16205	8.9741E-05	553.7704574178441	40.251	0.46873	40.251	40.012	40.481	0					20	16	2	0	0	0	0.25845	1	7309	7309		2.0598	0	1	23640	+		6733	11486	4520	4555	9186	9186					-0.021890018031172076
HPLHDFIL	8	Unmodified	_HPLHDFIL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2715759277344	2	496.271627	990.528701	0.30048	0.00014912	-0.0065523	-3.2517E-06	0.29393	0.00014587	496.2715437894652	50.69	1.0972	50.69	50.404	51.501	0					104	37	4	0	0	0	0.3322	1	10573	10573		32.117	0	1	378850			6734	1018	4521	4556	9187	9187					0.03305794997004341
HPLHDFIL	8	Unmodified	_HPLHDFIL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2715148925781	2	496.271627	990.528701	0.381	0.00018908	0.0055349	2.7468E-06	0.38653	0.00019183	496.2715657076316	50.582	0.86092	50.655	50.352	51.213	0.07312					73	31	3	0	0	0	0.41225	1	10416	10416		24.674	5.2349	1	382520			6735	1018	4521	4556	9188	9188					0.03305794997004341
HPLHEWTCL	9	Unmodified	_HPLHEWTCL_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7733154296875	2	568.271301	1134.52805	0.02759	1.5679E-05	0.044336	2.5195E-05	0.071926	4.0874E-05	568.2711255572432	45.747	0.81468	45.832	45.579	46.393	0.085617					55	30	2	0	0	0	0.26684	1	8982	8982		10.824	1.4408	1	111610			6736	4905	4522	4557	9189	9189					-0.033833677143775276
HPLHNDPNL	9	Unmodified	_HPLHNDPNL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7646484375	2	528.764697	1055.51484	-0.20106	-0.00010631	0.13177	6.9673E-05	-0.069294	-3.664E-05	528.7647063337632	25.209	1.3513	25.209	24.986	26.338	0					259	108	4	0	0	0	0.020768	4	2913	2876;2913;2953;2990		57.722	39.587	1	315480			6737	531	4523	4558	9190;9191;9192;9193	9191					-0.010694825021118959
HPLHNDPNL	9	Unmodified	_HPLHNDPNL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7647094726562	2	528.764697	1055.51484	-0.043158	-2.282E-05	0.11375	6.0148E-05	0.070595	3.7328E-05	528.7646937791067	25.075	1.1066	25.171	24.928	26.035	0.096075					216	94	4	0	0	0	0.00087611	5	2724	2691;2724;2759;2794;2875		125.53	94.893	1	369930			6738	531	4523	4558	9194;9195;9196;9197;9198	9195					-0.010694825021118959
HPLLPFYPPE	10	Unmodified	_HPLLPFYPPE_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8206176757812	2	605.318774	1208.623	0.091928	5.5646E-05	-1.1494	-0.00069577	-1.0575	-0.00064013	605.3180937065082	44.604	0.81847	44.604	44.387	45.205	0					67	29	4	0	0	0	0.45627	1	8805	8805		3.5965	0	1	300850			6739	1865	4524	4559	9199	9199					0.02702889028455502
HPLMHLCPSL	10	Unmodified	_HPLMHLCPSL_					0	0	0			REV__ENST00000566560.5_1_16:75668010-75682538:-|nuORF	REV__ENST00000566560.5_1_16:75668010-75682538:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2909545898438	2	574.291179	1146.56781	0.1274	7.3162E-05	-0.7506	-0.00043106	-0.62321	-0.0003579	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.21218	1	6162	6162		32.305	1.6689	1	8357100	+		6740	8100	4525	4560	9200	9200					0.00038435964711425186
HPLMYNSIY	9	Unmodified	_HPLMYNSIY_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2730712890625	2	569.273509	1136.53247	-0.58224	-0.00033145	-0.30401	-0.00017306	-0.88624	-0.00050452	569.2733268085647	41.786	2.2299	41.786	41.433	43.663	0					176	79	5	0	0	0	0.30397	1	8186	8186		6.2058	0.47393	1	618670			6741	815	4526	4561	9201	9201					-0.030339032914525887
HPLMYNSIY	9	Unmodified	_HPLMYNSIY_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2736206054688	2	569.273509	1136.53247	-0.21168	-0.0001205	-0.08464	-4.8183E-05	-0.29632	-0.00016869	569.2734842690708	44.553	2.7571	44.553	43.663	46.42	0					207	96	4	0	0	0	0.30397	1	8428	8428		6.2058	0.47393	1	767270			6742	815	4526	4561	9202	9202					-0.030339032914525887
HPLMYNSIY	9	Unmodified	_HPLMYNSIY_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2730712890625	2	569.273509	1136.53247	-0.009089	-5.1741E-06	0.062266	3.5446E-05	0.053177	3.0272E-05	569.2735236816048	44.317	2.9765	44.406	43.453	46.43	0.088924					263	110	4	0	0	0	0.30397	1	8264	8264		6.2058	0.47393	1	604300			6743	815	4526	4561	9203	9203					-0.030339032914525887
HPLNVGIRL	9	Unmodified	_HPLNVGIRL_					0	0	0		RNASEH1|p.G178V|1|0.06|ENSG00000171865|chr2:3549089-3549089|C/A|missense_variant;ENST00000451327.2_1_1:210477498-210477561:+|nuORF;ENSG00000171865|ENST00000315212|RNASEH1	RNASEH1|p.G178V|1|0.06|ENSG00000171865|chr2:3549089-3549089|C/A|missense_variant	RNASEH1|p.G178V|1|0.06|ENSG00000171865|chr2:3549089-3549089|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.811279296875	2	509.811451	1017.60835	0.29091	0.00014831	-0.36426	-0.0001857	-0.073352	-3.7396E-05	509.8111401154498	37.894	0.95722	37.894	37.7	38.657	0					55	32	3	0	0	0	0.26684	1	6702	6702		10.824	0	1	128650			6744	4469	4527	4562	9204	9204					0.10024861670990504
HPLPFPSL	8	Unmodified	_HPLPFPSL_					0	0	0		ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.255859375	2	454.255446	906.496338	0.095364	4.332E-05	0.93838	0.00042626	1.0337	0.00046958	454.255803125123	59	0.41129	59.071	58.83	59.242	0.070473					21	16	2	0	0	0	0.15706	1	12918	12918		45.75	2.782	1	109790			6745	6340	4528	4563	9205	9205					0.039350075939978524
HPLPGAWAEL	10	Unmodified	_HPLPGAWAEL_					0	0	0		ENST00000482899.1_1_7:150737010-150738273:+|nuORF	ENST00000482899.1_1_7:150737010-150738273:+|nuORF	ENST00000482899.1_1_7:150737010-150738273:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7854614257812	2	545.787641	1089.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.11	1	97.151	96.651	97.651	0.040855								0	0	0	0.33443	1	24513	24513		6.7232	0.51738	1				6746	6764	4529	4564	9206	9206					0.019531626801381208
HPLQTLPVL	9	Unmodified	_HPLQTLPVL_					0	0	0			REV__ENST00000321895.6_1_3:49201211-49201499:-|nuORF	REV__ENST00000321895.6_1_3:49201211-49201499:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.30804443359375	2	509.30821	1016.60187	-0.087093	-4.4357E-05	0.0031158	1.5869E-06	-0.083977	-4.277E-05	509.3081075851269	33.351	1.1278	33.351	33.103	34.231	0					82	41	3	0	0	0	0.16392	1	5269	5269		22.736	5.6234	1	197700	+		6747	11400	4530	4565	9207	9207					0.09422923719614573
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.275634765625	2	560.275095	1118.53564	-0.074244	-4.1597E-05	0.074596	4.1794E-05	0.00035197	1.972E-07	560.2755128674519	28.332	4.7026	28.332	27.994	32.696	0					636	235	6	0	0	0	3.9804E-16	27	3799	3756;3799;3837;3888;3932;3967;4010;4043;4086;4123;4165;4201;4244;4284;4325;4369;4409;4485;4622;4670;4717;4763;4808;4851;4987;5030;5071		181.33	0	1	10599000			6748	5476	4531	4566	9208;9209;9210;9211;9212;9213;9214;9215;9216;9217;9218;9219;9220;9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232;9233;9234	9209					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2742309570312	2	560.275095	1118.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.386	1	33.386	32.886	33.886	0								0	0	0	0.28665	1	5302	5302		19.257	0	1				6749	5476	4531	4566	9235	9235					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2750244140625	2	560.275095	1118.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.546	1	33.546	33.046	34.046	0								0	0	0	0.33443	1	5350	5350		6.7232	0	1				6750	5476	4531	4566	9236	9236					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.275634765625	2	560.275095	1118.53564	0.010288	5.7643E-06	0.081837	4.5851E-05	0.092125	5.1615E-05	560.2755415918906	28.276	2.1815	28.358	28.037	30.218	0.082134					476	134	5	0	0	0	3.9804E-16	16	3645	3599;3645;3683;3724;3766;3810;3848;3883;3922;3962;4004;4041;4082;4123;4166;4203		181.33	0	1	11354000			6751	5476	4531	4566	9237;9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249;9250;9251;9252	9238					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2750244140625	2	560.275095	1118.53564	0.042532	2.383E-05	-0.043976	-2.4638E-05	-0.0014436	-8.0879E-07	560.2749755976544	30.245	0.95492	30.32	30.073	31.028	0.075403					149	57	3	0	0	0	0.12944	5	4283	4244;4283;4324;4365;4409		41.84	0	1	137450			6752	5476	4531	4566	9253;9254;9255;9256;9257	9254					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2750244140625	2	560.275095	1118.53564	0.064684	3.6241E-05	0.037871	2.1218E-05	0.10255	5.7459E-05	560.2749559975392	31.171	1.648	31.245	31.026	32.674	0.07378					164	82	2	0	0	0	0.28643	7	4508	4508;4553;4595;4637;4733;4775;4907		24.021	0	1	71759			6753	5476	4531	4566	9258;9259;9260;9261;9262;9263;9264	9258					-0.01888936913087491
HPLTRHLHY	9	Unmodified	_HPLTRHLHY_					0	0	0		chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.7775268554688	2	587.317432	1172.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.06	1	115.07	114.57	115.57	0.013092								0	0	0	0.29233	1	29257	29257		0.6015	0.076735	1				6754	160	4532	4567	9265	9265					0.04090478414195786
HPLWFYLDI	9	Unmodified	_HPLWFYLDI_					0	0	0		ENST00000380121.7_1_13:33010521-33020605:-|nuORF;nc|ENSG00000244754|Q92802-3|N4BP2L2	ENST00000380121.7_1_13:33010521-33020605:-|nuORF	ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778076171875	3	401.878087	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.866	1	29.942	29.442	30.442	0.075403								0	0	0	0.29233	1	4136	4136		0.26902	0	1				6755	6283	4533	4568	9266	9266					0.01922906374034028
HPLYVDVVL	9	Unmodified	_HPLYVDVVL_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.800537109375	2	527.800217	1053.58588	0.7476	0.00039458	-0.34467	-0.00018192	0.40293	0.00021267	527.7999482445978	66.236	1.0229	66.236	66.016	67.039	0					92	38	3	0	0	0	0.17247	2	15288	15242;15288		21.747	10.106	1	784140			6756	4713	4534	4569	9267;9268	9268					0.06123217482695509
HPLYVDVVL	9	Unmodified	_HPLYVDVVL_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.8003540039062	2	527.800217	1053.58588	0.56772	0.00029964	-0.092454	-4.8797E-05	0.47527	0.00025085	527.8000493745408	66.274	0.78091	66.34	66.025	66.806	0.066872					67	30	4	0	0	0	0.25979	1	15114	15114		11.64	0	1	765680			6757	4713	4534	4569	9269	9269					0.06123217482695509
HPNDDDVHF	9	Unmodified	_HPNDDDVHF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.228271484375	2	548.228145	1094.44174	-0.069069	-3.7865E-05	0.28848	0.00015815	0.21941	0.00012029	548.2281925429653	30.741	2.0494	30.741	30.42	32.47	0					292	94	5	0	0	0	0.005983	7	4548	4465;4548;4591;4633;4726;4947;5007		79.596	68.772	1	518270			6758	1829	4535	4570	9270;9271;9272;9273;9274;9275;9276	9271					-0.10170656015384338
HPNDDDVHF	9	Unmodified	_HPNDDDVHF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2281494140625	2	548.228145	1094.44174	-0.013336	-7.3113E-06	0.13047	7.1528E-05	0.11713	6.4217E-05	548.2281774578322	30.676	2.0319	30.752	30.426	32.458	0.075403					223	104	3	0	0	0	0.0040167	5	4379	4336;4379;4420;4461;4500		103.42	84.162	1	503520			6759	1829	4535	4570	9277;9278;9279;9280;9281	9278					-0.10170656015384338
HPNEGALVL	9	Unmodified	_HPNEGALVL_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.25811767578125	2	475.258717	948.50288	-0.45018	-0.00021395	-0.52145	-0.00024782	-0.97163	-0.00046177	475.2584408865913	44.838	0.49375	44.838	44.632	45.126	0					37	17	3	0	0	0	0.2125	1	8735	8735		17.113	3.605	1	176450			6760	4613	4536	4571	9282	9282					0.026569007546981993
HPNEGALVL	9	Unmodified	_HPNEGALVL_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.258544921875	2	475.258717	948.50288	-0.25482	-0.00012111	-0.33868	-0.00016096	-0.59351	-0.00028207	475.25849552034464	44.72	0.6728	44.808	44.538	45.211	0.087543					50	24	3	0	0	0	0.2125	1	8581	8581		17.113	3.605	1	156390			6761	4613	4536	4571	9283	9283					0.026569007546981993
HPNIIYVYF	9	Unmodified	_HPNIIYVYF_					0	0	0			REV__ENST00000488325.5_1_6:32780676-32780880:-|nuORF	REV__ENST00000488325.5_1_6:32780676-32780880:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3058471679688	2	583.305667	1164.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.174	1	50.247	49.747	50.747	0.07312								0	0	0	0.28631	1	10233	10233		1.8442	0	1		+		6762	12133	4537	4572	9284	9284					0.02106619856999714
HPNIVSLQDVL	11	Unmodified	_HPNIVSLQDVL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.84326171875	2	617.843145	1233.67174	-0.081904	-5.0604E-05	0.3465	0.00021408	0.2646	0.00016348	617.8431317241433	68.302	0.81938	68.302	68.049	68.868	0					76	29	4	0	0	0	0.016795	3	15894	15850;15894;15941		68.484	45.826	1	711740			6763	4386	4538	4573	9285;9286;9287	9286					0.06424757597551434
HPNIVSLQDVL	11	Unmodified	_HPNIVSLQDVL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.8431396484375	2	617.843145	1233.67174	0.01795	1.109E-05	0.29313	0.00018111	0.31108	0.0001922	617.8432203598774	68.234	0.76472	68.298	68.089	68.854	0.063507					77	28	4	0	0	0	0.021089	3	15739	15694;15739;15787		64.692	40.902	1	851080			6764	4386	4538	4573	9288;9289;9290	9289					0.06424757597551434
HPNYLGDLIM	10	Oxidation (M)	_HPNYLGDLIM(Oxidation (M))_		HPNYLGDLIM(1)		HPNYLGDLIM(42)	0	0	1		ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF;nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.7905883789062	2	594.789524	1187.56449	0.21606	0.00012851	0.54998	0.00032712	0.76604	0.00045563	594.7897465107466	62.015	0.79878	62.088	61.861	62.66	0.073418					62	30	3	0	0	0	0.12844	1	13858	13858		41.956	11.319	1	336020			6765	3184	4539	4574	9291	9291		207			-0.02178535608322818
HPPFDERVK	9	Unmodified	_HPPFDERVK_					0	0	0			REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF	REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7957763671875	2	562.795998	1123.57744	0.36355	0.0002046	-0.5161	-0.00029046	-0.15255	-8.5856E-05	562.795693958978	38.484	2.8021	38.571	38.262	41.064	0.08688					260	108	5	0	0	0	0.30005	1	7312	7312		6.7232	0.99131	1	2080300	+		6766	12455	4540	4575	9292	9292					0.020596635660922402
HPPLSSSAVT	10	Unmodified	_HPPLSSSAVT_					0	0	0			REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B	REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.2615661621094	2	498.261456	994.50836	-0.21199	-0.00010563	0.37972	0.0001892	0.16773	8.3573E-05	498.26154840831686	21.522	0.45358	21.522	21.349	21.802	0					84	43	3	0	0	0	0.33099	1	1872	1872		19.257	1.1106	1	50670	+		6767	8160	4541	4576	9293	9293					0.010885795465128467
HPPLSSSAVT	10	Unmodified	_HPPLSSSAVT_					0	0	0			REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B	REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.26141357421875	2	498.261456	994.50836	0.13105	6.5298E-05	-0.035104	-1.7491E-05	0.095948	4.7807E-05	498.26131953743896	21.326	0.39713	21.428	21.254	21.651	0.10178					81	40	3	0	0	0	0.43972	1	1714	1714		6.7232	0	1	44996	+		6768	8160	4541	4576	9294	9294					0.010885795465128467
HPPPHTSSE	9	Unmodified	_HPPPHTSSE_					0	0	0			REV__ENST00000519651.5_2_8:143352476-143352983:-|nuORF	REV__ENST00000519651.5_2_8:143352476-143352983:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.230224609375	2	494.727781	987.441008	-0.010323	-5.1072E-06	0.56222	0.00027814	0.55189	0.00027304	494.7279160346193	28.265	0.83967	28.347	28.124	28.964	0.082132					93	51	3	0	0	0	0.2298	1	3632	3632		16.942	0	1	165240	+		6769	12290	4542	4577	9295	9295					-0.05321450664416716
HPPPQPLTHT	10	Unmodified	_HPPPQPLTHT_					0	0	0		ENST00000302625.5_1_2:219825213-219826146:+|nuORF	ENST00000302625.5_1_2:219825213-219826146:+|nuORF	ENST00000302625.5_1_2:219825213-219826146:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7958984375	2	562.795998	1123.57744	0.36355	0.0002046	-0.5161	-0.00029046	-0.15255	-8.5856E-05	562.795693958978	38.484	2.8021	38.571	38.262	41.064	0.08688					260	108	5	0	0	0	0.44496	1	7383	7383		5.7319	0	1	2080300			6770	5978	4543	4578	9296	9296					0.02059663566069503
HPPRHQDDT	9	Unmodified	_HPPRHQDDT_					0	0	0		ENST00000586392.1_1_19:34887279-34887507:+|nuORF	ENST00000586392.1_1_19:34887279-34887507:+|nuORF	ENST00000586392.1_1_19:34887279-34887507:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7546997070312	2	551.754861	1101.49517	0.3293	0.00018169	0.20812	0.00011483	0.53742	0.00029652	551.7552048270942	36.895	1.0322	36.895	36.332	37.364	0					83	39	3	0	0	0	0.23216	1	6362	6362		14.838	1.7958	1	84683			6771	7240	4544	4579	9297	9297					-0.051518585128633276
HPPRHQDDT	9	Unmodified	_HPPRHQDDT_					0	0	0		ENST00000586392.1_1_19:34887279-34887507:+|nuORF	ENST00000586392.1_1_19:34887279-34887507:+|nuORF	ENST00000586392.1_1_19:34887279-34887507:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2561645507812	2	551.754861	1101.49517	0.41474	0.00022884	-0.54059	-0.00029827	-0.12584	-6.9435E-05	551.7547679424387	37.986	1.5785	37.986	37.34	38.918	0					139	56	3	0	0	0	0.23216	2	6745	6745;6811		14.838	4.0143	1	174590			6772	7240	4544	4579	9298;9299	9298					-0.051518585128633276
HPPRHQDDT	9	Unmodified	_HPPRHQDDT_					0	0	0		ENST00000586392.1_1_19:34887279-34887507:+|nuORF	ENST00000586392.1_1_19:34887279-34887507:+|nuORF	ENST00000586392.1_1_19:34887279-34887507:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	551.754861	1101.49517	0.48362	0.00026684	-0.7092	-0.00039131	-0.22559	-0.00012447	551.7547475127766	37.846	1.937	37.931	37.213	39.15	0.084476	-0.027475	-0.00010299	NaN	14.838	115	70	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147140			6773	7240	4544	4579							-0.051518585128633276
HPPVAADAHL	10	Unmodified	_HPPVAADAHL_					0	0	0		ENSG00000159208|ENST00000290363|CIART	ENSG00000159208|ENST00000290363|CIART	ENSG00000159208|ENST00000290363|CIART	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7152099609375	2	514.269616	1026.52468	-0.037534	-1.9303E-05	0.29432	0.00015136	0.25678	0.00013206	514.2696556699952	31.612	0.31723	31.685	31.537	31.854	0.07378					20	15	2	0	0	0	0.31783	1	4658	4658		3.9444	1.0552	1	25661			6774	3720	4545	4580	9300	9300					0.012477055032604767
HPPYMLRCDL	10	Unmodified	_HPPYMLRCDL_					0	0	0			REV__ENSG00000157933|ENST00000378536|SKI	REV__ENSG00000157933|ENST00000378536|SKI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7991943359375	2	622.799368	1243.58418	-0.18979	-0.0001182	0.015219	9.4785E-06	-0.17457	-0.00010872	622.7993074414907	35.611	1.0629	35.611	35.314	36.377	0					84	40	3	0	0	0	0.45904	1	6026	6026		2.9952	2.9952	1	113940	+		6775	9791	4546	4581	9301	9301					-0.027864828692145238
HPPYMLRCDL	10	Unmodified	_HPPYMLRCDL_					0	0	0			REV__ENSG00000157933|ENST00000378536|SKI	REV__ENSG00000157933|ENST00000378536|SKI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.799072265625	2	622.799368	1243.58418	-0.02599	-1.6187E-05	-0.27405	-0.00017068	-0.30004	-0.00018686	622.7991256923034	35.477	0.79573	35.556	35.36	36.156	0.078827					50	29	2	0	0	0	0.46688	1	5880	5880		3.2813	3.2813	1	111590	+		6776	9791	4546	4581	9302	9302					-0.027864828692145238
HPQEENEPSL	10	Unmodified	_HPQEENEPSL_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2675170898438	2	590.267467	1178.52038	-0.016762	-9.8939E-06	0.19748	0.00011657	0.18072	0.00010667	590.2674964257365	31.97	0.68522	31.97	31.676	32.362	0					70	26	3	0	0	0	0.36006	1	4871	4871		16.149	3.1066	1	103160			6777	2846	4547	4582	9303	9303					-0.06173848500952772
HPQEENEPSL	10	Unmodified	_HPQEENEPSL_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2674560546875	2	590.267467	1178.52038	0.086191	5.0876E-05	0.037089	2.1892E-05	0.12328	7.2768E-05	590.2674168272519	31.929	0.67477	32.002	31.733	32.408	0.073782					70	30	3	0	0	0	0.43503	1	4746	4746		7.609	2.3121	1	98234			6778	2846	4547	4582	9304	9304					-0.06173848500952772
HPQGFEVAL	9	Unmodified	_HPQGFEVAL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.25885009765625	2	499.258717	996.50288	0.55362	0.0002764	-0.32214	-0.00016083	0.23149	0.00011557	499.2584609433744	53.928	0.74711	53.928	53.682	54.429	0					62	26	3	0	0	0	0.16392	1	11487	11487		32.786	13.529	1	637580			6779	4719	4548	4583	9305	9305					0.004489007547022084
HPQGFEVAL	9	Unmodified	_HPQGFEVAL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2586364746094	2	499.258717	996.50288	0.52502	0.00026212	-0.098805	-4.9329E-05	0.42622	0.00021279	499.25850701323105	53.847	0.73097	53.913	53.717	54.448	0.065399					65	27	4	0	0	0	0.2094	1	11342	11342		22.736	8.8302	1	590870			6780	4719	4548	4583	9306	9306					0.004489007547022084
HPQPGAVEL	9	Unmodified	_HPQPGAVEL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2508544921875	2	474.250892	946.48723	-0.026777	-1.2699E-05	-0.10837	-5.1393E-05	-0.13514	-6.4092E-05	474.2507795302529	38.705	1.063	38.705	38.455	39.518	0					98	40	3	0	0	0	0.03472	5	6910	6869;6910;6956;6999;7061		47.749	17.947	1	679340			6781	954	4549	4584	9307;9308;9309;9310;9311	9308					0.011846142376612079
HPQPGAVEL	9	Unmodified	_HPQPGAVEL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2508239746094	2	474.250892	946.48723	0.041945	1.9892E-05	-0.060156	-2.8529E-05	-0.018211	-8.6367E-06	474.2507666536497	38.605	0.85844	38.692	38.461	39.32	0.08688					73	32	3	0	0	0	0.03918	3	6758	6716;6758;6801		45.7	25.246	1	563670			6782	954	4549	4584	9312;9313;9314	9313					0.011846142376612079
HPQPGSQAL	9	Unmodified	_HPQPGSQAL_					0	0	0		ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28;ENSG00000143756|ENST00000366862|FBXO28	ENST00000483773.1_1_1:224301900-224321920:+|nuORF	ENST00000483773.1_1_1:224301900-224321920:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.7402038574219	2	467.740691	933.466829	-0.236	-0.00011039	-0.20814	-9.7357E-05	-0.44414	-0.00020774	467.74040814677636	26.851	0.57311	26.851	26.662	27.235	0					78	39	3	0	0	0	0.22083	1	3361	3361		16.149	6.0752	1	71374			6783	3181	4550	4585	9315	9315					-0.0025655642215269836
HPQPGSQAL	9	Unmodified	_HPQPGSQAL_					0	0	0		ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28;ENSG00000143756|ENST00000366862|FBXO28	ENST00000483773.1_1_1:224301900-224321920:+|nuORF	ENST00000483773.1_1_1:224301900-224321920:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.740234375	2	467.740691	933.466829	-0.31999	-0.00014967	-0.17233	-8.0608E-05	-0.49233	-0.00023028	467.74043873753425	26.722	0.38253	26.808	26.646	27.029	0.086699					65	28	3	0	0	0	0.26104	1	3206	3206		11.495	1.4208	1	75328			6784	3181	4550	4585	9316	9316					-0.0025655642215269836
HPQTHETAL	9	Unmodified	_HPQTHETAL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.2566528320312	2	517.256705	1032.49886	-0.26193	-0.00013548	-0.39111	-0.0002023	-0.65304	-0.00033779	517.2568112736349	20.227	1.2872	20.227	20.02	21.308	0					417	135	4	0	0	0	0.0028522	1	1558	1558		110.55	58.284	1	701080			6785	1568	4551	4586	9317	9317					-0.0160918873900755
HPQTHETAL	9	Unmodified	_HPQTHETAL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.2567138671875	2	517.256705	1032.49886	0.12276	6.3497E-05	-0.72297	-0.00037396	-0.60021	-0.00031046	517.2566575605952	20.137	1.2196	20.233	19.997	21.217	0.095232					394	135	4	0	0	0	7.0837E-07	1	1430	1430		117.76	70.012	1	775870			6786	1568	4551	4586	9318	9318					-0.0160918873900755
HPQTNSGI	8	Unmodified	_HPQTNSGI_					0	0	0		ENST00000483180.5_2_3:101572083-101572335:+|nuORF	ENST00000483180.5_2_3:101572083-101572335:+|nuORF	ENST00000483180.5_2_3:101572083-101572335:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.655517578125	2	427.211766	852.40898	-0.278	-0.00011877	0.16465	7.0342E-05	-0.11335	-4.8424E-05	427.2116979190375	27.691	0.29086	27.773	27.661	27.952	0.082134					20	17	2	0	0	0	0.3576	1	3543	3543		0.79363	0	1	14235			6787	6766	4552	4587	9319	9319					-0.023128183475591868
HPQWRAALR	9	Unmodified	_HPQWRAALR_					0	0	0		ENST00000370249.2_1_X:152613033-152613228:+|nuORF	ENST00000370249.2_1_X:152613033-152613228:+|nuORF	ENST00000370249.2_1_X:152613033-152613228:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2871704101562	2	567.817599	1133.62064	0.45506	0.00025839	-1.0054	-0.00057091	-0.55038	-0.00031252	567.8169709438064	53.919	0.8645	53.919	53.603	54.467	0					65	31	3	0	0	0	0.2446	1	11450	11450		11.64	0	1	216380			6788	6203	4553	4588	9320	9320					0.05917898134021016
HPQYEVVEI	9	Unmodified	_HPQYEVVEI_					0	0	0		TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2827758789062	2	557.282389	1112.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.373	1	52.373	51.873	52.873	0								0	0	0	0.20678	1	11034	11034		17.113	0	1				6789	664	4554	4589	9321	9321					-0.001548647649542545
HPRAPDYD	8	Unmodified	_HPRAPDYD_					0	0	0		ENST00000490021.2_1_1:110230443-110251195:+|nuORF	ENST00000490021.2_1_1:110230443-110251195:+|nuORF	ENST00000490021.2_1_1:110230443-110251195:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.72222900390625	2	485.722498	969.430444	-0.092716	-4.5034E-05	-0.015863	-7.705E-06	-0.10858	-5.2739E-05	485.7224681307785	35.386	0.35114	35.465	35.302	35.653	0.078827					19	13	2	0	0	0	0.53858	1	5806	5806		2.3027	0	1	29515			6790	6801	4555	4590	9322	9322					-0.05549433318867614
HPRDSAVYI	9	Unmodified	_HPRDSAVYI_					0	0	0		nc|ENSG00000211820|A0A0B4J266|TRAV41	nc|ENSG00000211820|A0A0B4J266|TRAV41	nc|ENSG00000211820|A0A0B4J266|TRAV41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2747802734375	2	529.274898	1056.53524	-0.11161	-5.9074E-05	0.43973	0.00023274	0.32811	0.00017366	529.2751835952694	31.537	0.53507	31.537	31.236	31.772	0					38	23	2	0	0	0	0.30757	1	4765	4765		5.7319	0	1	34120			6791	7599	4556	4591	9323	9323					0.009236881576953238
HPRFKEPSP	9	Unmodified	_HPRFKEPSP_					0	0	0		ENST00000531866.1_1_11:46722979-46723237:+|nuORF;ENST00000311764.2_1_11:46722587-46724291:+|nuORF;ENST00000534481.1_1_11:46722838-46724291:+|nuORF	ENST00000531866.1_1_11:46722979-46723237:+|nuORF	ENST00000531866.1_1_11:46722979-46723237:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7897338867188	2	547.790715	1093.56688	0.14156	7.7547E-05	-0.77602	-0.00042509	-0.63445	-0.00034755	547.7899747981567	35.243	0.33235	35.243	35.116	35.449	0					18	11	2	0	0	0	0.3354	1	5899	5899		2.0598	0.40713	1	25467			6792	6005	4557	4592	9324	9324					0.02383680911657393
HPRHRPLQT	9	Unmodified	_HPRHRPLQT_					0	0	0		ENST00000527401.5_1_11:45955654-45955798:-|nuORF;ENST00000530587.5_1_11:45955654-45956741:-|nuORF	ENST00000527401.5_1_11:45955654-45955798:-|nuORF	ENST00000527401.5_1_11:45955654-45955798:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7835083007812	2	571.320506	1140.62646	-0.52411	-0.00029943	1.8141	0.0010365	1.29	0.00073702	571.3213569446551	42.277	0.28031	42.277	42.084	42.365	0					14	9	2	0	0	0	0.25845	1	7934	7934		2.0598	0.40713	1	23945			6793	7004	4558	4593	9325	9325					0.06176996645694999
HPRPLAEPL	9	Unmodified	_HPRPLAEPL_					0	0	0		nc|ENSG00000106003|Q8NES3-3|LFNG;ENSG00000106003|ENST00000222725|LFNG	nc|ENSG00000106003|Q8NES3-3|LFNG	nc|ENSG00000106003|Q8NES3-3|LFNG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8107299804688	2	515.295633	1028.57671	-0.05675	-2.9243E-05	0.67795	0.00034935	0.6212	0.0003201	515.2956570996074	39.967	0.87479	39.967	39.748	40.623	0					51	30	3	0	0	0	0.20358	1	7302	7302		18.146	2.2992	1	79106			6794	1502	4559	4594	9326	9326					0.06356868917032443
HPRTFLPQE	9	Unmodified	_HPRTFLPQE_					0	0	0		ENST00000571243.1_1_17:7228777-7229792:-|nuORF	ENST00000571243.1_1_17:7228777-7229792:-|nuORF	ENST00000571243.1_1_17:7228777-7229792:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7953491210938	2	562.795998	1123.57744	0.19443	0.00010942	-0.52604	-0.00029605	-0.33161	-0.00018663	562.795673304398	38.6	3.2478	38.6	38.302	41.55	0					290	117	4	0	0	0	0.30757	1	7251	7251		5.7319	0	1	1472700			6795	7196	4560	4595	9327	9327					0.02059663566069503
HPRTPYQEL	9	Unmodified	_HPRTPYQEL_					0	0	0			REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF	REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.79345703125	2	570.793455	1139.57236	0.18103	0.00010333	0.056238	3.21E-05	0.23727	0.00013543	570.7934834373119	38.606	2.2299	38.606	38.332	40.562	0					147	81	4	0	0	0	0.24021	1	6898	6898		13.906	0	1	258260	+		6796	9312	4561	4596	9328	9328					0.008153597034606719
HPRTPYQEL	9	Unmodified	_HPRTPYQEL_					0	0	0			REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF	REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7935791015625	2	570.793455	1139.57236	0.31779	0.00018139	-0.075309	-4.2986E-05	0.24248	0.00013841	570.7933656891707	38.506	0.97142	38.593	38.297	39.268	0.086884					96	36	4	0	0	0	0.26705	2	6751	6664;6751		10.8	2.644	1	249090	+		6797	9312	4561	4596	9329;9330	9330					0.008153597034606719
HPRTPYQEL	9	Unmodified	_HPRTPYQEL_					0	0	0			REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF	REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	570.793455	1139.57236	0.31779	0.00018139	-0.075309	-4.2986E-05	0.24248	0.00013841	570.7933656891707	38.506	0.97142	38.593	38.297	39.268	0.086884	-0.0065297	-7.7434E-05	NaN	10.8	96	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249090	+		6798	9312	4561	4596							0.008153597034606719
HPRVTTRW	8	Unmodified	_HPRVTTRW_					0	0	0		ENST00000545210.5_1_11:61556683-61557310:-|nuORF	ENST00000545210.5_1_11:61556683-61557310:-|nuORF	ENST00000545210.5_1_11:61556683-61557310:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.269775390625	2	526.79105	1051.56755	-0.16846	-8.8742E-05	-1.5445	-0.00081365	-1.713	-0.00090239	526.7901511289044	28.02	0.543	28.02	27.728	28.271	0					42	28	2	0	0	0	0.3576	1	3681	3681		7.9102	0	1	34363			6799	7072	4562	4597	9331	9331					0.043825203513506494
HPSAHDVIL	9	Unmodified	_HPSAHDVIL_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.76422119140625	2	494.764166	987.513779	0.16565	8.1957E-05	-0.0050044	-2.476E-06	0.16065	7.9481E-05	494.76410991699703	34.295	1.8183	34.295	33.771	35.589	0					178	68	4	0	0	0	0.092418	3	5529	5482;5529;5687		34.102	17.16	1	309050			6800	625	4563	4598	9332;9333;9334	9333					0.019523031289850223
HPSAHDVIL	9	Unmodified	_HPSAHDVIL_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7641906738281	2	494.764166	987.513779	0.16816	8.3201E-05	-0.0054669	-2.7048E-06	0.1627	8.0496E-05	494.76408646358567	34.129	1.3952	34.205	33.828	35.223	0.076244					147	59	3	0	0	0	0.065541	4	5406	5323;5368;5406;5555		39.957	20.7	1	323490			6801	625	4563	4598	9335;9336;9337;9338	9337					0.019523031289850223
HPSDIEVDL	9	Unmodified	_HPSDIEVDL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;RAB11B-B2M|1|fusion;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7678833007812	2	512.750921	1023.48729	0.21145	0.00010842	0.19922	0.00010215	0.41067	0.00021057	512.7509709447324	50.278	2.4012	50.278	49.935	52.337	0					152	83	4	0	0	0	0.10833	1	10442	10442		30.637	4.3684	1	3468100			6802	81	4564	4599	9339	9339					-0.023514305530056845
HPSDIEVDL	9	Unmodified	_HPSDIEVDL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;RAB11B-B2M|1|fusion;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7511596679688	2	512.750921	1023.48729	0.29547	0.0001515	-0.056397	-2.8918E-05	0.23908	0.00012259	512.7508623028996	50.185	1.0207	50.259	49.979	51	0.07312					99	36	5	0	0	0	0.0045547	3	10260	10189;10210;10260		88.904	38.971	1	2812600			6803	81	4564	4599	9340;9341;9342	9342					-0.023514305530056845
HPSDIEVDLL	10	Unmodified	_HPSDIEVDLL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;RAB11B-B2M|1|fusion;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2930908203125	2	569.292953	1136.57135	0.37549	0.00021377	-0.17093	-9.7307E-05	0.20457	0.00011646	569.293018084418	62.707	0.92522	62.707	62.392	63.317	0					96	35	4	0	0	0	0.00081119	4	14185	14185;14214;14243;14285		92.491	40.223	1	2107800			6804	81	4565	4600	9343;9344;9345;9346	9343					0.008531005438953798
HPSDIEVDLL	10	Unmodified	_HPSDIEVDLL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;RAB11B-B2M|1|fusion;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2930908203125	2	569.292953	1136.57135	0.3334	0.0001898	0.007029	4.0016E-06	0.34043	0.0001938	569.2930589642394	62.572	0.8135	62.645	62.396	63.209	0.072701					82	30	4	0	0	0	0.0013653	2	14004	14004;14066		85.272	27.55	1	2134700			6805	81	4565	4600	9347;9348	9347					0.008531005438953798
HPSDLREY	8	Unmodified	_HPSDLREY_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.74334716796875	2	508.743431	1015.47231	0.086982	4.4252E-05	-0.2158	-0.00010979	-0.12882	-6.5536E-05	508.7430398159803	35.61	1.0131	35.61	35.389	36.402	0					61	38	3	0	0	0	0.46914	1	5948	5948		16.942	1.0951	1	138380			6806	1851	4566	4601	9349	9349					-0.034808776303407285
HPSERSFEL	9	Unmodified	_HPSERSFEL_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2702026367188	2	551.269813	1100.52507	0.21801	0.00012018	0.50381	0.00027774	0.72183	0.00039792	551.2700683100833	35.437	1.5464	35.437	35.205	36.751	0					121	58	4	0	0	0	0.13341	2	5892	5892;5937		26.268	7.0112	1	291640			6807	3609	4567	4602	9350;9351	9350					-0.021169195675156516
HPSERSFEL	9	Unmodified	_HPSERSFEL_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2698364257812	2	551.269813	1100.52507	0.28824	0.0001589	0.41099	0.00022657	0.69923	0.00038546	551.2700685962163	35.326	0.87952	35.405	35.199	36.078	0.078827					77	33	3	0	0	0	0.18398	1	5749	5749		20.415	3.3016	1	297720			6808	3609	4567	4602	9352	9352					-0.021169195675156516
HPSETDLFR	9	Unmodified	_HPSETDLFR_					0	0	0		ENST00000359359.6_3_6:36891403-36891601:+|nuORF	ENST00000359359.6_3_6:36891403-36891601:+|nuORF	ENST00000359359.6_3_6:36891403-36891601:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7550048828125	2	551.269813	1100.52507	0.21801	0.00012018	0.50381	0.00027774	0.72183	0.00039792	551.2700683100833	35.437	1.5464	35.437	35.205	36.751	0					121	58	4	0	0	0	0.27929	1	6025	6025		9.3831	0	1	291640			6809	6145	4568	4603	9353	9353					-0.021169195675156516
HPSFPEVSF	9	Unmodified	_HPSFPEVSF_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.751220703125	2	523.750724	1045.4869	0.31984	0.00016752	0.0071519	3.7458E-06	0.32699	0.00017126	523.7506619569072	61.465	0.32731	61.465	61.189	61.516	0					19	12	2	0	0	0	0.024893	1	13787	13787		54.774	14.816	1	375520			6810	4426	4569	4604	9354	9354					-0.03402805482187432
HPSFPEVSF	9	Unmodified	_HPSFPEVSF_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7513427734375	2	523.750724	1045.4869	0.17798	9.3219E-05	0.54522	0.00028556	0.7232	0.00037878	523.7509564350897	61.372	0.32792	61.445	61.171	61.499	0.073421					20	12	2	0	0	0	0.024893	1	13620	13620		54.774	22.468	1	275250			6811	4426	4569	4604	9355	9355					-0.03402805482187432
HPSHMDIPLDS	11	Unmodified	_HPSHMDIPLDS_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.7871704101562	2	624.787512	1247.56047	-0.16363	-0.00010224	0.34753	0.00021713	0.18389	0.00011489	624.7876829500022	30.356	0.81464	30.432	30.195	31.009	0.075403					107	48	3	0	0	0	0.39378	1	4338	4338		5.7319	0	1	99894			6812	1937	4570	4605	9356	9356					-0.053406251020078344
HPSKLNEVEQ	10	Unmodified	_HPSKLNEVEQ_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;ENST00000538366.5_1_1:170010937-170043656:-|nuORF	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.802001953125	2	590.801477	1179.5884	0.30034	0.00017744	0.0039467	2.3317E-06	0.30429	0.00017977	590.8015149016546	36.772	0.442	36.772	36.568	37.01	0					25	16	2	0	0	0	0.45945	1	6316	6316		2.9952	0	1	25931			6813	833	4571	4606	9357	9357					0.005790211497242126
HPSKSRFVH	9	Unmodified	_HPSKSRFVH_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7985229492188	2	547.796332	1093.57811	-0.004166	-2.2821E-06	-1.4315	-0.00078415	-1.4356	-0.00078643	547.7955412208072	32.058	0.48547	32.131	31.954	32.439	0.073784					42	22	3	0	0	0	0.33356	1	4810	4810		2.3027	0.4585	1	79973	+		6814	8781	4572	4607	9358	9358					0.035065030058149205
HPSLFPPSPPG	11	Unmodified	_HPSLFPPSPPG_					0	0	0		ENST00000476304.5_1_7:100218482-100231271:-|nuORF	ENST00000476304.5_1_7:100218482-100231271:-|nuORF	ENST00000476304.5_1_7:100218482-100231271:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.79296875	2	566.792924	1131.57129	-0.12284	-6.9627E-05	-1.0538	-0.00059731	-1.1767	-0.00066694	566.7919079550753	33.335	0.91321	33.335	32.826	33.739	0					67	34	3	0	0	0	0.38057	1	5292	5292		8.7454	3.0136	1	73978			6815	6716	4573	4608	9359	9359					0.010771453345341797
HPSLSDTKQ	9	Unmodified	_HPSLSDTKQ_					0	0	0		ENST00000515155.1_1_4:89671748-89680064:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A	ENST00000515155.1_1_4:89671748-89680064:-|nuORF	ENST00000515155.1_1_4:89671748-89680064:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7417297363281	2	506.756538	1011.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.838	1	33.838	33.338	34.338	0								0	0	0	0.2722	1	5437	5437		4.756	2.4533	1				6816	2922	4574	4609	9360	9360					-0.006766084588662125
HPSQLVLTL	9	Unmodified	_HPSQLVLTL_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.29779052734375	2	504.297842	1006.58113	0.1149	5.7943E-05	-0.091396	-4.6091E-05	0.023503	1.1852E-05	504.297937742201	36.568	6.215	36.568	36.208	42.423	0					562	227	5	0	0	0	0.32375	1	6925	6925		3.5965	0	1	3794600			6817	4450	4575	4610	9361	9361					0.0781033333993264
HPSVDQKQIE	10	Unmodified	_HPSVDQKQIE_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.801025390625	2	590.801477	1179.5884	0.3618	0.00021375	-0.0365	-2.1565E-05	0.3253	0.00019219	590.8014487250296	36.652	0.41096	36.734	36.556	36.967	0.081711					20	16	2	0	0	0	0.44496	1	6169	6169		5.7319	0	1	31887			6818	555	4576	4611	9362	9362					0.005790211497014752
HPSVDSSVL	9	Unmodified	_HPSVDSSVL_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7403564453125	2	470.740357	939.46616	-0.10788	-5.0784E-05	0.29841	0.00014048	0.19053	8.9692E-05	470.7403656725568	39.299	1.1243	39.388	39.131	40.256	0.088562					102	45	4	0	0	0	0.1182	1	6962	6962		28.487	3.0875	1	704030			6819	2645	4577	4612	9363	9363					-0.005993958618546458
HPSVDSSVLL	10	Unmodified	_HPSVDSSVLL_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2822875976562	2	527.282389	1052.55022	0.15616	8.234E-05	-0.098182	-5.177E-05	0.057978	3.0571E-05	527.2822623333586	51.081	0.88994	51.081	50.762	51.652	0					57	29	4	0	0	0	0.38104	1	10669	10669		13.906	0.86358	1	346760			6820	2645	4578	4613	9364	9364					0.026051352350577872
HPSWMGRL	8	Unmodified	_HPSWMGRL_					0	0	0		SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|75|3|anti-sense	SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|75|3|anti-sense	SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|75|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2615661621094	2	492.247629	982.480705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.981	1	27.981	27.481	28.481	0								0	0	0	0.38822	1	3703	3703		0.79363	0	1				6821	13414	4579	4614	9365	9365					-0.011236021946956498
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.73297119140625	2	500.732729	999.450904	-0.13624	-6.8222E-05	0.13905	6.9626E-05	0.0028038	1.404E-06	500.73295278912286	28.105	1.8216	28.105	27.845	29.666	0					274	99	5	0	0	0	0.0097093	4	3748	3706;3748;3792;3832		68.081	46.334	1	3008800			6822	1032	4580	4615	9366;9367;9368;9369	9367					-0.04884307449719927
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7330322265625	2	500.732729	999.450904	-0.11077	-5.5468E-05	0.14697	7.3594E-05	0.036197	1.8125E-05	500.7329733859629	27.991	1.7477	28.073	27.783	29.53	0.082134					280	109	5	0	0	0	0.0053304	4	3588	3547;3588;3625;3663		81.613	53.126	1	2608200			6823	1032	4580	4615	9370;9371;9372;9373	9371					-0.04884307449719927
HPTDERVAL	9	Unmodified	_HPTDERVAL_					0	0	0		nc|ENSG00000115919|Q16719-2|KYNU;ENSG00000115919|ENST00000264170|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.2722778320312	2	519.272355	1036.53016	-0.10815	-5.6161E-05	-0.3067	-0.00015926	-0.41485	-0.00021542	519.2723843290227	29.127	3.0153	29.127	28.881	31.897	0					407	153	5	0	0	0	0.0045417	2	4062	4025;4062		89.401	60.319	1	2100300			6824	1929	4581	4616	9374;9375	9375					0.013353842950891703
HPTDERVAL	9	Unmodified	_HPTDERVAL_					0	0	0		nc|ENSG00000115919|Q16719-2|KYNU;ENSG00000115919|ENST00000264170|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.2723999023438	2	519.272355	1036.53016	-0.12578	-6.5312E-05	-0.18873	-9.8002E-05	-0.31451	-0.00016331	519.2724628280153	29.049	1.7718	29.127	28.868	30.64	0.078287					314	111	5	0	0	0	0.0046402	2	3909	3869;3909		85.642	56.56	1	2170500			6825	1929	4581	4616	9376;9377	9377					0.013353842950891703
HPTDVDYRV	9	Unmodified	_HPTDVDYRV_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2698364257812	2	551.269813	1100.52507	-0.02338	-1.2888E-05	0.13036	7.1865E-05	0.10698	5.8976E-05	551.2698329726816	30.893	1.4368	30.893	30.645	32.082	0					158	66	4	0	0	0	0.032194	5	4563	4519;4563;4605;4649;4691		49.554	24.155	1	566750			6826	1150	4582	4617	9378;9379;9380;9381;9382	9379					-0.021169195675156516
HPTDVDYRV	9	Unmodified	_HPTDVDYRV_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7547607421875	2	551.269813	1100.52507	0.21801	0.00012018	0.50381	0.00027774	0.72183	0.00039792	551.2700683100833	35.437	1.5464	35.437	35.205	36.751	0					121	58	4	0	0	0	0.29576	1	6112	6112		7.2892	1.0834	1	291640			6827	1150	4582	4617	9383	9383					-0.021169195675156516
HPTDVDYRV	9	Unmodified	_HPTDVDYRV_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2698364257812	2	551.269813	1100.52507	0.066568	3.6697E-05	0.13181	7.2665E-05	0.19838	0.00010936	551.2698308053534	30.864	1.706	30.937	30.684	32.39	0.073782					168	83	4	0	0	0	0.032194	4	4435	4389;4435;4481;4520		49.554	24.155	1	538670			6828	1150	4582	4617	9384;9385;9386;9387	9385					-0.021169195675156516
HPTDVDYRV	9	Unmodified	_HPTDVDYRV_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2703857421875	2	551.269813	1100.52507	0.28824	0.0001589	0.41099	0.00022657	0.69923	0.00038546	551.2700685962163	35.326	0.87952	35.405	35.199	36.078	0.078827					77	33	3	0	0	0	0.15282	1	5796	5796		24.021	1.2843	1	297720			6829	1150	4582	4617	9388	9388					-0.021169195675156516
HPTDVDYRVM	10	Unmodified	_HPTDVDYRVM_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7897338867188	2	616.790055	1231.56556	-0.21346	-0.00013166	-0.0088522	-5.4599E-06	-0.22231	-0.00013712	616.7900692773153	37.839	0.90603	37.839	37.52	38.426	0					58	30	3	0	0	0	0.45794	1	6754	6754		3.2813	1.6287	1	102280			6830	1150	4583	4618	9389	9389					-0.04096321239421741
HPTDVDYRVM	10	Unmodified	_HPTDVDYRVM_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.79052734375	2	616.790055	1231.56556	-0.15109	-9.3189E-05	0.29325	0.00018088	0.14217	8.7687E-05	616.790264952516	37.732	0.69172	37.817	37.541	38.233	0.084476					43	24	3	0	0	0	0.28859	3	6471	6471;6518;6536		23.79	15.044	1	78578			6831	1150	4583	4618	9390;9391;9392	9390					-0.04096321239421741
HPTGKMFIL	9	Unmodified	_HPTGKMFIL_					0	0	0		ENST00000463632.1_1_7:7678661-7680452:-|nuORF;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENSG00000106399|ENST00000223129|RPA3	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2893676757812	2	522.288963	1042.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.842	1	46.842	46.342	47.342	0								0	0	0	0.19984	1	9360	9360		18.146	4.2403	1				6832	1521	4584	4619	9393	9393					0.04379294813429624
HPTGKMFIL	9	Unmodified	_HPTGKMFIL_					0	0	0		ENST00000463632.1_1_7:7678661-7680452:-|nuORF;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENSG00000106399|ENST00000223129|RPA3	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2891235351562	2	522.288963	1042.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.865	1	46.865	46.365	47.365	0								0	0	0	0.16041	1	9367	9367		24.021	5.8856	1				6833	1521	4584	4619	9394	9394					0.04379294813429624
HPTGKMFIL	9	Unmodified	_HPTGKMFIL_					0	0	0		ENST00000463632.1_1_7:7678661-7680452:-|nuORF;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENSG00000106399|ENST00000223129|RPA3	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2886962890625	2	522.288963	1042.56337	0.16516	8.626E-05	0.33769	0.00017637	0.50285	0.00026263	522.2891491325485	46.682	0.32465	46.765	46.683	47.007	0.083096					26	15	2	0	0	0	0.12214	1	9201	9201		27.629	5.8822	1	145810			6834	1521	4584	4619	9395	9395					0.04379294813429624
HPTGKMFIL	9	Oxidation (M)	_HPTGKM(Oxidation (M))FIL_		HPTGKM(1)FIL		HPTGKM(44)FIL	0	0	1		ENST00000463632.1_1_7:7678661-7680452:-|nuORF;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENSG00000106399|ENST00000223129|RPA3	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2861328125	2	530.28642	1058.55829	0.041817	2.2175E-05	-0.12497	-6.6273E-05	-0.083158	-4.4097E-05	530.2862895423631	39.852	2.8347	39.94	39.131	41.966	0.088562					229	112	4	0	0	0	0.047633	1	7145	7145		43.858	19.838	1	386220			6835	1521	4584	4620	9396	9396		92			0.03134990950820793
HPTLLQHAL	9	Unmodified	_HPTLLQHAL_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2955322265625	2	515.295633	1028.57671	-0.05675	-2.9243E-05	0.67795	0.00034935	0.6212	0.0003201	515.2956570996074	39.967	0.87479	39.967	39.748	40.623	0					51	30	3	0	0	0	0.098463	1	7278	7278		32.786	14.639	1	79106			6836	1352	4585	4621	9397	9397					0.06356868917032443
HPTLLQHAL	9	Unmodified	_HPTLLQHAL_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2962646484375	2	515.295633	1028.57671	0.061846	3.1869E-05	0.42491	0.00021895	0.48675	0.00025082	515.2956614601982	39.85	0.61838	39.939	39.695	40.314	0.088562					41	23	2	0	0	0	0.098463	2	7104	7104;7150		32.786	12.332	1	74041			6837	1352	4585	4621	9398;9399	9398					0.06356868917032443
HPTPELWTL	9	Unmodified	_HPTPELWTL_					0	0	0		ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.75927734375	2	547.287474	1092.5604	0.48087	0.00026317	-1.7271	-0.00094519	-1.2462	-0.00068202	547.2867095495905	64.259	0.80494	64.33	63.886	64.691	0.071014					47	28	2	0	0	0	0.13166	1	14509	14509		24.021	1.2843	1	363640			6838	4137	4586	4622	9400	9400					0.01781742960270094
HPTPRSPL	8	Unmodified	_HPTPRSPL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.7531433105469	2	452.753601	903.49265	-0.052029	-2.3557E-05	-0.75647	-0.00034249	-0.8085	-0.00036605	452.75316148642867	26.595	0.48914	26.595	26.401	26.891	0					51	32	2	0	0	0	0.53202	1	3288	3288		6.7232	0	1	41963			6839	7529	4587	4623	9401	9401					0.03704337820136061
HPTPRSPL	8	Unmodified	_HPTPRSPL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.7528381347656	2	452.753601	903.49265	-0.18639	-8.4391E-05	-0.18953	-8.5809E-05	-0.37592	-0.0001702	452.7533332931435	26.465	0.48187	26.556	26.369	26.851	0.091507					62	37	3	0	0	0	0.52476	1	3111	3111		9.3831	0	1	43352			6840	7529	4587	4623	9402	9402					0.03704337820136061
HPTPRSPLL	9	Unmodified	_HPTPRSPLL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7745056152344	2	509.295633	1016.57671	-0.039385	-2.0059E-05	0.14249	7.2568E-05	0.1031	5.2509E-05	509.2956322630589	34.008	0.40313	34.008	33.828	34.231	0					22	14	2	0	0	0	0.24929	1	5480	5480		9.3831	2.66	1	25796			6841	7529	4588	4624	9403	9403					0.06908868917037125
HPTPRSPLL	9	Unmodified	_HPTPRSPLL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7744445800781	2	509.295633	1016.57671	0.013307	6.7773E-06	0.6317	0.00032172	0.64501	0.0003285	509.295958113556	33.958	0.46926	34.034	33.808	34.277	0.076244					26	19	2	0	0	0	0.25699	1	5351	5351		3.5965	1.5367	1	30214			6842	7529	4588	4624	9404	9404					0.06908868917037125
HPTQKKQIE	9	Unmodified	_HPTQKKQIE_					0	0	0			REV__ENST00000339569.9_1_17:38287776-38290619:+|nuORF	REV__ENST00000339569.9_1_17:38287776-38290619:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2582397460938	2	554.809105	1107.60366	0.70678	0.00039213	0.4227	0.00023452	1.1295	0.00062665	554.8089590959014	47.993	0.26147	48.073	47.924	48.185	0.080029					11	9	2	0	0	0	0.25174	1	9565	9565		7.2892	1.0834	1	52154	+		6843	10782	4589	4625	9405	9405					0.05415932737582807
HPTSSLSTW	9	Unmodified	_HPTSSLSTW_					0	0	0			REV__ENST00000465440.1_1_1:168277945-168282237:+|nuORF	REV__ENST00000465440.1_1_1:168277945-168282237:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.24566650390625	2	508.245806	1014.47706	-0.14592	-7.4163E-05	0.17182	8.7326E-05	0.025899	1.3163E-05	508.24573888513515	27.327	0.76264	27.414	27.138	27.901	0.0867					111	56	4	0	0	0	0.29576	1	3419	3419		7.2892	1.5574	1	165630	+		6844	9453	4590	4626	9406	9406					-0.029599934875591316
HPTSSLSTW	9	Unmodified	_HPTSSLSTW_					0	0	0			REV__ENST00000465440.1_1_1:168277945-168282237:+|nuORF	REV__ENST00000465440.1_1_1:168277945-168282237:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7578125	2	508.245806	1014.47706	-0.14592	-7.4163E-05	0.17182	8.7326E-05	0.025899	1.3163E-05	508.24573888513515	27.327	0.76264	27.414	27.138	27.901	0.0867					111	56	4	0	0	0	0.25174	1	3412	3412		7.2892	1.5574	1	165630	+		6845	9453	4590	4626	9407	9407					-0.029599934875591316
HPTTSFFIYI	10	Unmodified	_HPTTSFFIYI_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|93|2|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|93|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.315673828125	2	613.316232	1224.61791	0.022041	1.3518E-05	-0.25834	-0.00015844	-0.2363	-0.00014492	613.3160037954829	36.316	1.2773	36.397	36.14	37.418	0.081715					117	51	4	0	0	0	0.47119	1	6346	6346		0.45834	0.45834	1	541970	+		6846	12705	4591	4627	9408	9408					0.014585851658694082
HPTTTEYTF	9	Unmodified	_HPTTTEYTF_					0	0	0		L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7510375976562	2	548.750921	1095.48729	-0.25156	-0.00013804	0.027997	1.5364E-05	-0.22356	-0.00012268	548.7512283679753	40.624	1.0915	40.624	40.341	41.433	0					77	38	3	0	0	0	0.030375	2	7460	7460;7508		50.855	25.456	1	230000			6847	7391	4592	4628	9409;9410	9409					-0.05663430552999671
HPTTTEYTF	9	Unmodified	_HPTTTEYTF_					0	0	0		L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7509765625	2	548.750921	1095.48729	-0.064459	-3.5372E-05	0.26346	0.00014458	0.19901	0.0001092	548.7511599210521	40.509	0.6663	40.598	40.345	41.011	0.089645					61	25	3	0	0	0	0.092418	3	7293	7293;7341;7424		34.102	19.264	1	254520			6848	7391	4592	4628	9411;9412;9413	9411					-0.05663430552999671
HPTVTGESL	9	Unmodified	_HPTVTGESL_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7399597167969	2	470.740357	939.46616	-0.18369	-8.6471E-05	0.0044806	2.1092E-06	-0.17921	-8.4362E-05	470.74011012201703	33.902	0.46487	33.902	33.688	34.153	0					32	16	3	0	0	0	0.26684	1	5466	5466		10.824	0	1	41210			6849	3685	4593	4629	9414	9414					-0.005993958618319084
HPTVTGESL	9	Unmodified	_HPTVTGESL_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	470.740357	939.46616	-0.2309	-0.00010869	0.38677	0.00018207	0.15587	7.3375E-05	470.74032770068277	33.834	0.47935	33.908	33.74	34.219	0.074322	0.0027977	0.00013289	NaN	10.824	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47085			6850	3685	4593	4629							-0.005993958618319084
HPTWGDEQL	9	Unmodified	_HPTWGDEQL_					0	0	0		nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1;nc|ENSG00000095303|P23219-4|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.747802734375	2	541.748713	1081.48287	-0.16802	-9.1027E-05	0.014925	8.0857E-06	-0.1531	-8.2941E-05	541.7485503359298	45.453	0.7433	45.453	45.238	45.981	0					38	25	2	0	0	0	0.23216	2	8940	8940;8993		14.838	14.838	1	72937			6851	1096	4594	4630	9415;9416	9415					-0.054608949758858216
HPTWGDEQL	9	Unmodified	_HPTWGDEQL_					0	0	0		nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1;nc|ENSG00000095303|P23219-4|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7487182617188	2	541.748713	1081.48287	0.1486	8.0502E-05	0.053761	2.9125E-05	0.20236	0.00010963	541.748482793802	45.401	0.63122	45.489	45.285	45.916	0.08754					41	24	3	0	0	0	0.23216	1	8793	8793		14.838	9.0778	1	99586			6852	1096	4594	4630	9417	9417					-0.054608949758858216
HPVDRIFD	8	Unmodified	_HPVDRIFD_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7433166503906	2	499.756341	997.498129	0.16233	8.1127E-05	-0.049029	-2.4503E-05	0.1133	5.6625E-05	499.756190214618	35.231	0.37074	35.31	35.142	35.513	0.078827					23	14	2	0	0	0	0.53345	1	5790	5790		5.7604	0	1	65145			6853	3475	4595	4631	9418	9418					-0.0007198338805665117
HPVDVYCGFL	10	Unmodified	_HPVDVYCGFL_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7724609375	2	575.273509	1148.53247	0.28151	0.00016195	0.67478	0.00038818	0.95629	0.00055013	575.2739770470497	46.802	0.53554	46.802	46.728	47.263	0					23	19	2	0	0	0	0.31794	1	9353	9353		3.5965	1.9439	1	88000			6854	2011	4596	4632	9419	9419					-0.035859032914686395
HPVEKPVVL	9	Unmodified	_HPVEKPVVL_					0	0	0		ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.30810546875	2	509.30821	1016.60187	-0.087093	-4.4357E-05	0.0031158	1.5869E-06	-0.083977	-4.277E-05	509.3081075851269	33.351	1.1278	33.351	33.103	34.231	0					82	41	3	0	0	0	0.098463	1	5312	5312		32.786	0	1	197700			6855	2282	4597	4633	9420	9420					0.09422923719614573
HPVEKPVVL	9	Unmodified	_HPVEKPVVL_					0	0	0		ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.30810546875	2	509.30821	1016.60187	-0.0316	-1.6094E-05	0.055796	2.8417E-05	0.024196	1.2323E-05	509.30813379201817	33.26	1.027	33.334	33.089	34.116	0.074322					90	42	4	0	0	0	0.13341	2	5124	5124;5172		26.268	3.5319	1	211890			6856	2282	4597	4633	9421;9422	9421					0.09422923719614573
HPVFQQESF	9	Unmodified	_HPVFQQESF_					0	0	0		ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7670288085938	2	559.766906	1117.51926	0.048213	2.6988E-05	-0.30205	-0.00016908	-0.25383	-0.00014209	559.7667991545883	45.977	0.66723	45.977	45.782	46.449	0					32	22	2	0	0	0	0.091044	2	9098	9098;9128		34.402	22.761	1	94148			6857	4393	4598	4634	9423;9424	9423					-0.03480018079198999
HPVFQQESF	9	Unmodified	_HPVFQQESF_					0	0	0		ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2679443359375	2	559.766906	1117.51926	0.21133	0.0001183	-1.6203	-0.00090699	-1.409	-0.0007887	559.7667202944664	45.896	0.47034	45.981	45.773	46.243	0.085621					40	18	3	0	0	0	0.12214	1	8946	8946		27.629	16.134	1	108790			6858	4393	4598	4634	9425	9425					-0.03480018079198999
HPVGFHPRHG	10	Unmodified	_HPVGFHPRHG_					0	0	0		ENST00000395131.5_1_6:33257384-33257957:+|nuORF;ENST00000374606.9_1_6:33257467-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7943725585938	2	570.794124	1139.57369	0.0094918	5.4179E-06	-0.64015	-0.0003654	-0.63066	-0.00035998	570.7938059065837	34.6	0.88065	34.6	34.181	35.062	0					59	34	2	0	0	0	0.45794	2	5624	5624;5674		3.2813	1.4371	1	39480			6859	6235	4599	4635	9426;9427	9426					0.009490385828712533
HPVGFHPRHG	10	Unmodified	_HPVGFHPRHG_					0	0	0		ENST00000395131.5_1_6:33257384-33257957:+|nuORF;ENST00000374606.9_1_6:33257467-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2825317382812	2	570.794124	1139.57369	0.10517	6.003E-05	-0.26176	-0.00014941	-0.15659	-8.9381E-05	570.7940933231595	35.763	0.89846	35.763	35.389	36.287	0					56	33	2	0	0	0	0.31794	1	5967	5967		3.5965	0	1	47255			6860	6235	4599	4635	9428	9428					0.009490385828712533
HPVGFHPRHG	10	Unmodified	_HPVGFHPRHG_					0	0	0		ENST00000395131.5_1_6:33257384-33257957:+|nuORF;ENST00000374606.9_1_6:33257467-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7933959960938	2	570.794124	1139.57369	0.057192	3.2645E-05	-0.7024	-0.00040093	-0.64521	-0.00036828	570.7937302604444	34.51	1.029	34.586	34.221	35.25	0.076244					63	43	2	0	0	0	0.44246	1	5542	5542		6.2058	2.6093	1	45957			6861	6235	4599	4635	9429	9429					0.009490385828712533
HPVGFHPRHG	10	Unmodified	_HPVGFHPRHG_					0	0	0		ENST00000395131.5_1_6:33257384-33257957:+|nuORF;ENST00000374606.9_1_6:33257467-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7941284179688	2	570.794124	1139.57369	0.13789	7.8709E-05	-0.092505	-5.2801E-05	0.045388	2.5907E-05	570.7939732426142	35.621	0.98	35.7	35.252	36.232	0.078827					55	37	2	0	0	0	0.45794	1	5882	5882		3.2813	1.2216	1	50031			6862	6235	4599	4635	9430	9430					0.009490385828712533
HPVGFHPRHG	10	Unmodified	_HPVGFHPRHG_					0	0	0		ENST00000395131.5_1_6:33257384-33257957:+|nuORF;ENST00000374606.9_1_6:33257467-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	ENST00000395131.5_1_6:33257384-33257957:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	570.794124	1139.57369	0.13789	7.8709E-05	-0.092505	-5.2801E-05	0.045388	2.5907E-05	570.7939732426142	35.621	0.98	35.7	35.252	36.232	0.078827	-0.031513	8.8444E-05	NaN	3.2813	55	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50031			6863	6235	4599	4635							0.009490385828712533
HPVGTDEEPL	10	Unmodified	_HPVGTDEEPL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.261962890625	2	547.261653	1092.50875	0.19912	0.00010897	0.51392	0.00028125	0.71305	0.00039022	547.2620225972254	36.024	0.78016	36.024	35.765	36.545	0					70	30	4	0	0	0	0.37232	2	6086	6086;6131		14.838	4.7643	1	116910			6864	1902	4600	4636	9431;9432	9431					-0.03380045524295383
HPVHPDIKL	9	Unmodified	_HPVHPDIKL_					0	0	0		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.9265747070312	2	528.303458	1054.59236	-0.11059	-5.8427E-05	-0.21301	-0.00011254	-0.32361	-0.00017096	528.3032674370107	32.551	0.59798	32.551	32.307	32.905	0					52	28	3	0	0	0	0.21622	1	5039	5039		21.537	10.713	1	38425			6865	510	4601	4637	9433	9433					0.06725155434082808
HPVHPDIKL	9	Unmodified	_HPVHPDIKL_					0	0	0		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.9265747070312	2	528.303458	1054.59236	-0.071442	-3.7743E-05	-0.0010376	-5.4814E-07	-0.07248	-3.8291E-05	528.3034421535205	32.445	0.549	32.519	32.288	32.837	0.07378					67	30	3	0	0	0	0.12752	1	4898	4898		39.95	14.55	1	72824			6866	510	4601	4637	9434	9434					0.06725155434082808
HPVKIGDLF	9	Unmodified	_HPVKIGDLF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.292724609375	2	513.292559	1024.57057	0.20272	0.00010406	0.35354	0.00018147	0.55626	0.00028552	513.2927113974422	51.828	1.4885	51.828	51.596	53.085	0					101	52	3	0	0	0	0.017478	3	10884	10839;10884;10931		60.074	24.03	1	1081600			6867	2720	4602	4638	9435;9436;9437	9436					0.059263506854904335
HPVKIGDLF	9	Unmodified	_HPVKIGDLF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2930297851562	2	513.292559	1024.57057	0.28942	0.00014856	0.26238	0.00013468	0.5518	0.00028323	513.2926347595906	51.747	1.2705	51.817	51.613	52.884	0.069874					103	48	4	0	0	0	0.017478	2	10682	10682;10729		60.074	24.03	1	1024500			6868	2720	4602	4638	9438;9439	9438					0.059263506854904335
HPVLHVCLK	9	Unmodified	_HPVLHVCLK_					0	0	0		nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENSG00000144554|ENST00000675286|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3033447265625	2	523.302404	1044.59026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.638	1	95.638	95.138	96.138	0								0	0	0	0.2722	1	24218	24218		4.756	0.42677	1				6869	3215	4603	4639	9440	9440					0.06974403424624143
HPVLLTGAPL	10	Unmodified	_HPVLLTGAPL_					0	0	0		ENST00000420887.2_1_3:180538532-180538697:+|nuORF	ENST00000420887.2_1_3:180538532-180538697:+|nuORF	ENST00000420887.2_1_3:180538532-180538697:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.3080139160156	2	509.30821	1016.60187	-0.087093	-4.4357E-05	0.0031158	1.5869E-06	-0.083977	-4.277E-05	509.3081075851269	33.351	1.1278	33.351	33.103	34.231	0					82	41	3	0	0	0	0.41688	1	5357	5357		10.074	0	1	197700			6870	6449	4604	4640	9441	9441					0.09422923719614573
HPVLLTGAPL	10	Unmodified	_HPVLLTGAPL_					0	0	0		ENST00000420887.2_1_3:180538532-180538697:+|nuORF	ENST00000420887.2_1_3:180538532-180538697:+|nuORF	ENST00000420887.2_1_3:180538532-180538697:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.3082275390625	2	509.30821	1016.60187	-0.0316	-1.6094E-05	0.055796	2.8417E-05	0.024196	1.2323E-05	509.30813379201817	33.26	1.027	33.334	33.089	34.116	0.074322					90	42	4	0	0	0	0.41688	2	5216	5216;5261		10.074	0	1	211890			6871	6449	4604	4640	9442;9443	9442					0.09422923719614573
HPVNAQRALAF	11	Unmodified	_HPVNAQRALAF_					0	0	0			REV__ENST00000553096.5_2_12:70087602-70093013:-|nuORF	REV__ENST00000553096.5_2_12:70087602-70093013:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.2135009765625	3	408.55964	1222.65709	0.014072	5.7494E-06	0.37131	0.0001517	0.38538	0.00015745	408.55985414836164	36.2	0.49396	36.282	36.14	36.634	0.081715					32	20	3	0	0	0	0.31089	1	6045	6045		2.6312	0.72486	1	42760	+		6872	12443	4605	4641	9444	9444					0.05466730240073048
HPVNAQRALAF	11	Unmodified	_HPVNAQRALAF_					0	0	0			REV__ENST00000553096.5_2_12:70087602-70093013:-|nuORF	REV__ENST00000553096.5_2_12:70087602-70093013:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	408.55964	1222.65709	0.38491	0.00015726	0.16651	6.8029E-05	0.55142	0.00022529	408.55972956987557	36.364	0.33724	36.364	36.184	36.522	0	0.041139	-0.00012947	NaN	2.6312	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30422	+		6873	12443	4605	4641							0.05466730240073048
HPVQIQTQL	9	Unmodified	_HPVQIQTQL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2981567382812	2	532.298373	1062.58219	-0.26523	-0.00014118	0.14678	7.8133E-05	-0.11844	-6.3048E-05	532.298273571923	42.806	0.75251	42.806	42.575	43.327	0					41	25	3	0	0	0	0.081383	1	8129	8129		36.506	12.716	1	119810			6874	782	4606	4642	9445	9445					0.05340547708851773
HPVQIQTQL	9	Unmodified	_HPVQIQTQL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2989501953125	2	532.298373	1062.58219	-0.032261	-1.7172E-05	-0.079573	-4.2357E-05	-0.11183	-5.9529E-05	532.298288005333	42.674	0.79041	42.764	42.571	43.362	0.089764					41	29	2	0	0	0	0.11816	1	7979	7979		28.495	4.7047	1	116520			6875	782	4606	4642	9446	9446					0.05340547708851773
HPVRVEDEP	9	Unmodified	_HPVRVEDEP_					0	0	0		nc|ENSG00000237515|B4DS77-2|SHISA9;ENSG00000237515|ENST00000558583|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2823486328125	2	539.269813	1076.52507	0.15795	8.5177E-05	0.16891	9.1087E-05	0.32686	0.00017626	539.2698361091922	35.399	0.68785	35.399	35.205	35.892	0					54	25	4	0	0	0	0.30005	1	6006	6006		6.7232	0.36906	1	169130			6876	5635	4607	4643	9447	9447					-0.010129195675290248
HPVSLEQYL	9	Unmodified	_HPVSLEQYL_					0	0	0		ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2849731445312	2	543.284931	1084.55531	0.10967	5.9585E-05	0.59535	0.00032345	0.70503	0.00038303	543.2851002679121	59.156	1.1388	59.156	58.931	60.069	0					102	43	4	0	0	0	0.0072241	2	13076	13076;13124		75.761	33.666	1	1060000			6877	1124	4608	4644	9448;9449	9448					0.016414390976706272
HPVSLEQYL	9	Unmodified	_HPVSLEQYL_					0	0	0		ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.28515625	2	543.284931	1084.55531	0.24937	0.00013548	0.24439	0.00013277	0.49376	0.00026825	543.2849833845954	59.085	0.98736	59.155	58.891	59.878	0.070477					75	39	3	0	0	0	0.01943	1	12968	12968		58.679	24.576	1	807520			6878	1124	4608	4644	9450	9450					0.016414390976706272
HPVSREWTL	9	Unmodified	_HPVSREWTL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7960205078125	2	562.795998	1123.57744	0.19443	0.00010942	-0.52604	-0.00029605	-0.33161	-0.00018663	562.795673304398	38.6	3.2478	38.6	38.302	41.55	0					290	117	4	0	0	0	0.0097877	13	6883	6834;6883;6923;6963;7006;7052;7145;7188;7304;7354;7428;7490;7560		67.838	32.95	1	1472700			6879	793	4609	4645	9451;9452;9453;9454;9455;9456;9457;9458;9459;9460;9461;9462;9463	9452					0.020596635660922402
HPVSREWTL	9	Unmodified	_HPVSREWTL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7960815429688	2	562.795998	1123.57744	0.36355	0.0002046	-0.5161	-0.00029046	-0.15255	-8.5856E-05	562.795693958978	38.484	2.8021	38.571	38.262	41.064	0.08688					260	108	5	0	0	0	0.0042616	10	6703	6660;6703;6750;6792;6834;6982;7069;7139;7190;7264		100.09	61.915	1	2080300			6880	793	4609	4645	9464;9465;9466;9467;9468;9469;9470;9471;9472;9473	9465					0.020596635660922402
HPVYPRQR	8	Unmodified	_HPVYPRQR_					0	0	0		nc|ENSG00000204406|Q9P267-2|MBD5;nc|ENSG00000204406|Q9P267|MBD5;ENSG00000204406|ENST00000642680|MBD5	nc|ENSG00000204406|Q9P267-2|MBD5	nc|ENSG00000204406|Q9P267-2|MBD5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2698364257812	2	526.79105	1051.56755	-0.20415	-0.00010754	-1.4513	-0.00076455	-1.6555	-0.0008721	526.7901396081386	27.94	0.46959	28.022	27.729	28.199	0.082132					42	28	2	0	0	0	0.3576	1	3510	3510		2.3027	0.24298	1	30658			6881	5470	4610	4646	9474	9474					0.043825203513506494
HPVYQRSLE	9	Unmodified	_HPVYQRSLE_					0	0	0		MYO9A|p.H752Y|1|0.15|ENSG00000066933|chr15:71951825-71951825|G/A|missense_variant	MYO9A|p.H752Y|1|0.15|ENSG00000066933|chr15:71951825-71951825|G/A|missense_variant	MYO9A|p.H752Y|1|0.15|ENSG00000066933|chr15:71951825-71951825|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.79345703125	2	564.793455	1127.57236	0.14403	8.1347E-05	0.062379	3.5231E-05	0.20641	0.00011658	564.793346227523	36.215	1.0395	36.215	35.944	36.983	0					64	39	3	0	0	0	0.32831	1	6203	6203		2.9952	0	1	49298			6882	7440	4611	4647	9475	9475					0.013673597034767226
HPVYQRSLE	9	Unmodified	_HPVYQRSLE_					0	0	0		MYO9A|p.H752Y|1|0.15|ENSG00000066933|chr15:71951825-71951825|G/A|missense_variant	MYO9A|p.H752Y|1|0.15|ENSG00000066933|chr15:71951825-71951825|G/A|missense_variant	MYO9A|p.H752Y|1|0.15|ENSG00000066933|chr15:71951825-71951825|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7940063476562	2	564.793455	1127.57236	0.1858	0.00010494	0.2581	0.00014578	0.4439	0.00025071	564.7934059869539	36.105	0.61661	36.187	35.966	36.583	0.081711					54	24	3	0	0	0	0.32831	1	6062	6062		2.9952	0.26005	1	85952			6883	7440	4611	4647	9476	9476					0.013673597034767226
HPWEVMPEL	9	Unmodified	_HPWEVMPEL_					0	0	0		ENST00000494591.1_1_4:144346636-144346936:+|nuORF	ENST00000494591.1_1_4:144346636-144346936:+|nuORF	ENST00000494591.1_1_4:144346636-144346936:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2730712890625	2	569.273509	1136.53247	-0.21168	-0.0001205	-0.08464	-4.8183E-05	-0.29632	-0.00016869	569.2734842690708	44.553	2.7571	44.553	43.663	46.42	0					207	96	4	0	0	0	0.18364	6	8797	8797;8927;8972;9022;9083;9134		20.454	4.3045	1	767270			6884	6828	4612	4648	9477;9478;9479;9480;9481;9482	9477					-0.03033903291475326
HPWEVMPEL	9	Unmodified	_HPWEVMPEL_					0	0	0		ENST00000494591.1_1_4:144346636-144346936:+|nuORF	ENST00000494591.1_1_4:144346636-144346936:+|nuORF	ENST00000494591.1_1_4:144346636-144346936:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7744750976562	2	569.273509	1136.53247	-0.4059	-0.00023107	-0.10883	-6.1955E-05	-0.51473	-0.00029302	569.2733785575424	41.644	1.44	41.733	41.494	42.934	0.089764					148	56	4	0	0	0	0.3354	1	8013	8013		2.0598	0	1	630060			6885	6828	4612	4648	9483	9483					-0.03033903291475326
HPWEVMPEL	9	Unmodified	_HPWEVMPEL_					0	0	0		ENST00000494591.1_1_4:144346636-144346936:+|nuORF	ENST00000494591.1_1_4:144346636-144346936:+|nuORF	ENST00000494591.1_1_4:144346636-144346936:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2730712890625	2	569.273509	1136.53247	-0.009089	-5.1741E-06	0.062266	3.5446E-05	0.053177	3.0272E-05	569.2735236816048	44.317	2.9765	44.406	43.453	46.43	0.088924					263	110	4	0	0	0	0.092418	7	8549	8549;8634;8768;8814;8861;8943;9008		34.102	6.4736	1	604300			6886	6828	4612	4648	9484;9485;9486;9487;9488;9489;9490	9484					-0.03033903291475326
HPWVDYTA	8	Unmodified	_HPWVDYTA_					0	0	0		EIF2B1|p.E268Q|1|0.24|ENSG00000111361|chr12:123621872-123621872|C/G|missense_variant;ENSG00000111361|ENST00000424014|EIF2B1	EIF2B1|p.E268Q|1|0.24|ENSG00000111361|chr12:123621872-123621872|C/G|missense_variant	EIF2B1|p.E268Q|1|0.24|ENSG00000111361|chr12:123621872-123621872|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.72784423828125	2	494.729792	987.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.397	1	28.397	27.897	28.897	0								0	0	0	0.385	1	3826	3826		19.439	0	1				6887	312	4613	4649	9491	9491					-0.04919361170721004
HPYDSGIIYCL	11	Unmodified	_HPYDSGIIYCL_					0	0	0		ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.8024291992188	2	640.802631	1279.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.562	1	18.562	18.062	19.062	0								0	0	0	0.34212	1	1154	1154		0	0	1				6888	5285	4614	4650	9492	9492					-0.03790266436794809
HPYERSLD	8	Unmodified	_HPYERSLD_					0	0	0			REV__ENSG00000113273|ENST00000264914|ARSB	REV__ENSG00000113273|ENST00000264914|ARSB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7430114746094	2	508.743431	1015.47231	0.1262	6.4203E-05	-0.21258	-0.00010815	-0.08638	-4.3945E-05	508.743138949236	35.534	0.68583	35.613	35.36	36.046	0.078831					52	25	3	0	0	0	0.46914	1	5877	5877		16.942	3.0362	1	151390	+		6889	8738	4615	4651	9493	9493					-0.0348087763032936
HPYFYAPEL	9	Unmodified	_HPYFYAPEL_					0	0	0		CON__P02768-1;ENSG00000163631|ENST00000295897|ALB;CON__P02769	CON__P02768-1	CON__P02768-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2868041992188	2	568.7742	1135.53385	0.57233	0.00032553	-2.8397	-0.0016151	-2.2673	-0.0012896	568.7728154767242	54.351	0.43524	54.351	54.016	54.451	0					17	15	2	0	0	0	0.25051	1	11629	11629		7.9102	0.62092	1	75446		+	6890	217	4616	4652	9494	9494					-0.02849945931052389
HPYFYAPELL	10	Unmodified	_HPYFYAPELL_					0	0	0		CON__P02768-1;ENSG00000163631|ENST00000295897|ALB;CON__P02769	CON__P02768-1	CON__P02768-1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3164672851562	2	625.316232	1248.61791	-0.12454	-7.7876E-05	-0.77923	-0.00048727	-0.90377	-0.00056514	625.3153881233002	71.952	0.88513	71.952	71.614	72.499	0					67	30	3	0	0	0	0.06954	2	17008	17008;17059		52.268	37.863	1	541480		+	6891	217	4617	4653	9495;9496	9495					0.0035458516586004407
HPYFYAPELL	10	Unmodified	_HPYFYAPELL_					0	0	0		CON__P02768-1;ENSG00000163631|ENST00000295897|ALB;CON__P02769	CON__P02768-1	CON__P02768-1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.3158569335938	2	625.316232	1248.61791	0.11023	6.893E-05	-0.15773	-9.8631E-05	-0.047497	-2.97E-05	625.316344825944	71.797	0.78399	71.853	71.677	72.461	0.055939					52	27	3	0	0	0	0.11192	1	16821	16821		43.858	29.453	1	431070		+	6892	217	4617	4653	9497	9497					0.0035458516586004407
HPYHTEPGL	9	Unmodified	_HPYHTEPGL_					0	0	0		nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;ENST00000603195.5_1_10:75559086-75560534:+|nuORF;ENST00000433366.6_1_10:75557251-75561274:+|nuORF	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2399291992188	2	525.753798	1049.49304	-0.18726	-9.8451E-05	0.33198	0.00017454	0.14472	7.6088E-05	525.75381076619	27.455	0.28488	27.455	27.235	27.52	0					30	20	2	0	0	0	0.25051	1	3526	3526		7.9102	1.187	1	79126			6893	7604	4618	4654	9498	9498					-0.029722872506681597
HPYHTEPGL	9	Unmodified	_HPYHTEPGL_					0	0	0		nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;ENST00000603195.5_1_10:75559086-75560534:+|nuORF;ENST00000433366.6_1_10:75557251-75561274:+|nuORF	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2281494140625	2	525.753798	1049.49304	-0.22919	-0.0001205	-0.11257	-5.9186E-05	-0.34176	-0.00017968	525.7536905461368	27.333	0.30127	27.42	27.19	27.491	0.0867					45	21	3	0	0	0	0.24263	1	3407	3407		12.532	4.6214	1	86056			6894	7604	4618	4654	9499	9499					-0.029722872506681597
HPYLPLCMHL	10	Unmodified	_HPYLPLCMHL_					0	0	0		ENST00000573130.2_1_16:3104061-3104997:-|nuORF	ENST00000573130.2_1_16:3104061-3104997:-|nuORF	ENST00000573130.2_1_16:3104061-3104997:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.2060546875	3	408.540312	1222.59911	0.4704	0.00019218	0.10334	4.222E-05	0.57374	0.0002344	408.54024537065186	37.511	0.95499	37.511	36.942	37.897	0					45	35	2	0	0	0	0.31829	1	6552	6552		0.77653	0	1	40027			6895	7198	4619	4655	9500	9500					-0.003289910011972097
HPYPHPFKP	9	Unmodified	_HPYPHPFKP_					0	0	0			REV__CSMD3|p.N1603K|1|0.1|ENSG00000164796|chr8:112506777-112506777|G/C|missense_variant	REV__CSMD3|p.N1603K|1|0.1|ENSG00000164796|chr8:112506777-112506777|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2750244140625	2	560.290351	1118.56615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.727	1	31.8	31.3	32.3	0.073782								0	0	0	0.28409	1	4687	4687		2.3027	0	1		+		6896	7862	4620	4656	9501	9501					0.011608862625962502
HPYQPDPKM	9	Unmodified	_HPYQPDPKM_					0	0	0		ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7631225585938	2	556.763309	1111.51206	0.00086222	4.8005E-07	0.0070244	3.9109E-06	0.0078866	4.391E-06	556.7630930550229	27.822	0.59369	27.822	27.627	28.221	0					81	34	3	0	0	0	0.27332	2	3649	3649;3738		10.074	5.3179	1	98789			6897	3071	4621	4657	9502;9503	9502					-0.039230739512731816
HPYQPDPKM	9	Unmodified	_HPYQPDPKM_					0	0	0		ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.763671875	2	556.763309	1111.51206	0.1115	6.2078E-05	-0.2518	-0.00014019	-0.1403	-7.8115E-05	556.7630662176301	27.708	0.51873	27.79	27.622	28.141	0.082132					82	31	4	0	0	0	0.24767	2	3483	3483;3527		13.042	7.8118	1	114940			6898	3071	4621	4657	9504;9505	9504					-0.039230739512731816
HPYSMAMRI	9	Unmodified	_HPYSMAMRI_					0	0	0			REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.26708984375	2	553.267704	1104.52086	-0.079557	-4.4016E-05	-0.84915	-0.00046981	-0.9287	-0.00051382	553.2676522191151	24.818	4.3	24.818	24.523	28.823	0					763	304	5	0	0	0	0.30005	2	3907	3782;3907		6.7232	0.38484	1	9055400	+		6899	12360	4622	4658	9506;9507	9507					-0.027224235864423463
HPYSMAMRI	9	Unmodified	_HPYSMAMRI_					0	0	0			REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.266845703125	2	553.267704	1104.52086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.924	1	28.924	28.424	29.424	0								0	0	0	0.26267	1	3982	3982		6.7232	0	1		+		6900	12360	4622	4658	9508	9508					-0.027224235864423463
HPYSMAMRI	9	Unmodified	_HPYSMAMRI_					0	0	0			REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2670288085938	2	553.267704	1104.52086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.465	1	29.465	28.965	29.965	0								0	0	0	0.26267	1	4139	4139		6.7232	0	1		+		6901	12360	4622	4658	9509	9509					-0.027224235864423463
HPYSMAMRI	9	Unmodified	_HPYSMAMRI_					0	0	0			REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.267822265625	2	553.267704	1104.52086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.305	1	30.305	29.805	30.805	0								0	0	0	0.26267	1	4388	4388		6.7232	0	1		+		6902	12360	4622	4658	9510	9510					-0.027224235864423463
HQAKPTTELL	10	Unmodified	_HQAKPTTELL_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.3167114257812	2	569.316763	1136.61897	-0.12732	-7.2486E-05	0.21384	0.00012174	0.086522	4.9259E-05	569.3168040418157	29.803	0.75608	29.878	29.691	30.447	0.075403					106	46	3	0	0	0	0.28859	1	4115	4115		23.79	3.3752	1	164410	+		6903	12810	4623	4659	9511	9511					0.056127995347424076
HQDFCPGAR	9	Unmodified	_HQDFCPGAR_					0	0	0			REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2879638671875	2	515.7298	1029.44505	0.222	0.00011449	-0.94438	-0.00048704	-0.72238	-0.00037255	515.7294455093112	36.049	0.1062	36.049	35.999	36.105	0					5	3	2	0	0	0	0.259	1	6088	6088		1.6526	0.17072	1	12314	+		6904	8047	4624	4660	9512	9512					-0.06849684442363468
HQDRLDFLK	9	Unmodified	_HQDRLDFLK_					0	0	0			REV__ENST00000546727.5_1_12:113545343-113557136:-|nuORF	REV__ENST00000546727.5_1_12:113545343-113557136:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3146362304688	2	586.314554	1170.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.328	1	96.368	95.868	96.868	0.039772								0	0	0	0.26267	1	24272	24272		6.7232	0	1		+		6905	8686	4625	4661	9513	9513					0.036073351118375285
HQIGFNMGR	9	Unmodified	_HQIGFNMGR_					0	0	0			REV__ENST00000393792.2_1_5:171661209-171661293:-|nuORF	REV__ENST00000393792.2_1_5:171661209-171661293:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.311279296875	2	530.261268	1058.50798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.564	1	86.591	86.091	87.091	0.027573								0	0	0	0.27427	1	21302	21302		4.3292	2.0265	1		+		6906	11707	4626	4662	9514	9514					-0.018931186543113654
HQKEWNLKY	9	Unmodified	_HQKEWNLKY_					0	0	0		ENSG00000177414|ENST00000371077|UBE2U;nc|ENSG00000177414|Q5VVX9|UBE2U	ENSG00000177414|ENST00000371077|UBE2U	ENSG00000177414|ENST00000371077|UBE2U	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.87530517578125	3	415.884012	1244.63021	-0.25243	-0.00010498	3.8717	0.0016102	3.6193	0.0015052	415.88493741367165	31.141	0.39534	31.214	31.026	31.421	0.073782					26	19	2	0	0	0	0.34754	1	4556	4556		0.20686	0	1	21122			6907	4701	4627	4663	9515	9515					0.017676216288919022
HQKGGITFR	9	Unmodified	_HQKGGITFR_					0	0	0		ENST00000446425.2_1_2:24199858-24205795:+|nuORF	ENST00000446425.2_1_2:24199858-24205795:+|nuORF	ENST00000446425.2_1_2:24199858-24205795:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2799682617188	2	522.290882	1042.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.486	1	53.486	52.986	53.986	0								0	0	0	0.24643	1	11374	11374		10.074	0	1				6908	6544	4628	4664	9516	9516					0.047631006314986735
HQKHCLLCL	9	Unmodified	_HQKHCLLCL_					0	0	0			REV__ENST00000394053.6_1_2:74441372-74441471:+|nuORF	REV__ENST00000394053.6_1_2:74441372-74441471:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7831420898438	2	547.783521	1093.55249	-0.056158	-3.0762E-05	-0.73911	-0.00040487	-0.79527	-0.00043564	547.783202050338	27.235	0.29706	27.322	27.117	27.414	0.0867					36	20	2	0	0	0	0.32112	1	3372	3372		3.9444	0.94915	1	44664	+		6909	11710	4629	4665	9517	9517					0.009455691674929767
HQKVYEQSDF	10	Unmodified	_HQKVYEQSDF_					0	0	0			REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF	REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.8292236328125	2	640.798934	1279.58332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.55	1	102.59	102.09	103.09	0.040916								0	0	0	0.33905	1	26157	26157		1.3295	0	1		+		6910	8708	4630	4666	9518	9518					-0.04529282712906024
HQMIMQLL	8	Unmodified	_HQMIMQLL_					0	0	0			REV__ENST00000253925.11_1_11:70228223-70229283:+|nuORF	REV__ENST00000253925.11_1_11:70228223-70229283:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2673645019531	2	507.267173	1012.51979	0.36458	0.00018494	0.87932	0.00044605	1.2439	0.00063099	507.2674882451693	88.447	0.58484	88.447	88.232	88.817	0					46	23	3	0	0	0	0.3528	1	22011	22011		18.135	0	1	720660	+		6911	11213	4631	4667	9519	9519					0.014033620446639361
HQMIMQLL	8	Unmodified	_HQMIMQLL_					0	0	0			REV__ENST00000253925.11_1_11:70228223-70229283:+|nuORF	REV__ENST00000253925.11_1_11:70228223-70229283:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	507.267173	1012.51979	0.32077	0.00016272	1.0765	0.00054606	1.3973	0.00070878	507.2675787610934	88.404	0.48029	88.434	88.196	88.677	0.030037	-0.0066564	0.00010086	NaN	18.135	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510070	+		6912	11213	4631	4667							0.014033620446639361
HQQELEILK	9	Unmodified	_HQQELEILK_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.3167724609375	2	569.316763	1136.61897	-0.17259	-9.8256E-05	0.13367	7.6101E-05	-0.038915	-2.2155E-05	569.3168279716866	29.932	0.82885	29.932	29.721	30.55	0					99	40	4	0	0	0	0.34704	1	4366	4366		0.52476	0.52476	1	146220			6913	3222	4632	4668	9520	9520					0.056127995347424076
HQQHNPTF	8	Unmodified	_HQQHNPTF_					0	0	0			REV__ENST00000505571.5_1_5:78915459-78919324:+|nuORF	REV__ENST00000505571.5_1_5:78915459-78919324:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.27691650390625	2	504.73594	1007.45733	0.0789	3.9824E-05	3.4061	0.0017192	3.485	0.001759	504.7371057273831	51.103	0.56074	51.103	50.856	51.417	0					35	18	3	0	0	0	0.35042	1	10610	10610		19.439	0.18201	1	164750	+		6914	9992	4633	4669	9521	9521					-0.046103247076757725
HQQNQNRVW	9	Unmodified	_HQQNQNRVW_					0	0	0		nc|ENSG00000104081|Q96LC9-2|BMF;ENSG00000104081|ENST00000354670|BMF	nc|ENSG00000104081|Q96LC9-2|BMF	nc|ENSG00000104081|Q96LC9-2|BMF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.2947998046875	2	605.297227	1208.5799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.723	1	89.757	89.257	90.257	0.034065								0	0	0	0.28527	1	22260	22260		2.0598	0.21551	1				6915	1396	4634	4670	9522	9522					-0.01604487976260316
HQRSVGRGSM	10	Unmodified	_HQRSVGRGSM_					0	0	0			REV__ENST00000496200.5_1_7:128043769-128045952:-|nuORF	REV__ENST00000496200.5_1_7:128043769-128045952:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7796630859375	2	557.780356	1113.54616	0.62443	0.0003483	-1.3276	-0.00074048	-0.70312	-0.00039219	557.7795203414354	47.282	0.55146	47.365	47.178	47.729	0.083096					45	22	3	0	0	0	0.42335	1	9355	9355		9.3831	1.473	1	197820	+		6916	12183	4635	4671	9523	9523					-0.006072327396395849
HRARMIEYF	9	Unmodified	_HRARMIEYF_					0	0	0		nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.8087768554688	2	611.811125	1221.6077	0.32395	0.00019819	-1.4313	-0.00087567	-1.1073	-0.00067747	611.8100304219538	75.04	0.82127	75.04	74.767	75.589	0					68	30	4	0	0	0	0.24767	1	18027	18027		13.042	1.5478	1	954840			6917	2928	4636	4672	9524	9524					0.005756989596193307
HRARYINV	8	Unmodified	_HRARYINV_					0	0	0			REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.739501953125	2	514.79105	1027.56755	-0.48379	-0.00024905	-1.7871	-0.00091996	-2.2708	-0.001169	514.7900551321076	42.098	0.074085	42.098	42.057	42.131	0					4	2	2	0	0	0	0.3576	1	7916	7916		2.3027	0.4585	1	18662	+		6918	8933	4637	4673	9525	9525					0.054865203513600136
HRDYETATL	9	Unmodified	_HRDYETATL_					0	0	0		ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENST00000588618.5_1_19:39138385-39212431:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.267578125	2	553.26727	1104.51999	-0.079557	-4.4016E-05	-0.064357	-3.5606E-05	-0.14391	-7.9623E-05	553.2676522191151	24.818	4.3	24.818	24.523	28.823	0					763	304	5	0	0	0	0.026209	18	2773	2773;2812;2848;2886;2919;2952;2987;3025;3062;3068;3104;3143;3192;3225;3299;3377;3420;3487		53.833	15.859	1	9055400			6919	2468	4638	4674	9526;9527;9528;9529;9530;9531;9532;9533;9534;9535;9536;9537;9538;9539;9540;9541;9542;9543	9526					-0.028092234301539065
HRDYETATL	9	Unmodified	_HRDYETATL_					0	0	0		ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENST00000588618.5_1_19:39138385-39212431:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.267822265625	2	553.26727	1104.51999	0.16038	8.8735E-05	-0.1755	-9.7096E-05	-0.015111	-8.3605E-06	553.2675990365626	24.663	2.8333	24.759	24.511	27.344	0.096075					687	235	6	0	0	0	0.026209	10	2641	2605;2641;2676;2711;2743;2895;2930;2968;3002;3306		53.833	15.859	1	9272800			6920	2468	4638	4674	9544;9545;9546;9547;9548;9549;9550;9551;9552;9553	9545					-0.028092234301539065
HRGFQQLL	8	Unmodified	_HRGFQQLL_					0	0	0		ENST00000556730.1_1_14:95047745-95056676:+|nuORF;ENSG00000188488|ENST00000329597|SERPINA5	ENST00000556730.1_1_14:95047745-95056676:+|nuORF	ENST00000556730.1_1_14:95047745-95056676:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.77978515625	2	499.780151	997.545748	0.019368	9.6795E-06	-0.87899	-0.0004393	-0.85962	-0.00042962	499.77964124670814	72.579	0.45959	72.579	72.287	72.747	0					36	15	3	0	0	0	0.46036	1	17165	17165		18.135	0	1	421850			6921	5156	4639	4675	9554	9554					0.046877156027903766
HRHDPVHHHH	10	Unmodified	_HRHDPVHHHH_					0	0	0			REV__ENSG00000130528|ENST00000252825|HRC	REV__ENSG00000130528|ENST00000252825|HRC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2396240234375	3	436.878366	1307.61327	0.41585	0.00018168	2.904	0.0012687	3.3199	0.0014504	436.87907220709513	78.472	0.63246	78.472	78.073	78.705	0					31	21	2	0	0	0	0.3184	1	19001	19001		1.7423	0.78	1	42479	+		6922	9058	4640	4676	9555	9555					-0.0282344141367048
HRHEEFRLGC	10	Unmodified	_HRHEEFRLGC_					0	0	0			REV__nc|ENSG00000143365|P51449-2|RORC	REV__nc|ENSG00000143365|P51449-2|RORC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3073120117188	2	642.306738	1282.59892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.26	1	103.3	102.8	103.8	0.040916								0	0	0	0.33905	1	26369	26369		1.3295	0	1		+		6923	9459	4641	4677	9556	9556					-0.03107274676835914
HRHTHVVRRR	10	Unmodified	_HRHTHVVRRR_					0	0	0			REV__ENST00000535852.6_1_14:24028960-24035624:-|nuORF	REV__ENST00000535852.6_1_14:24028960-24035624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.9325256347656	3	451.932693	1352.77625	0.41129	0.00018588	-0.35403	-0.00016	0.057263	2.5879E-05	451.9324496051823	92.443	1.5319	92.48	91.887	93.419	0.036522					197	58	5	0	0	0	0.47161	1	23221	23221		0.69767	0	1	480740	+		6924	12383	4642	4678	9557	9557					0.11397361708122844
HRIFFLFPH	9	Unmodified	_HRIFFLFPH_					0	0	0			REV__ENSG00000242550|ENST00000238508|SERPINB10;REV__nc|ENSG00000021355|P30740-2|SERPINB1	REV__ENSG00000242550|ENST00000238508|SERPINB10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.8768005371094	3	405.225821	1212.65563	-0.30922	-0.0001253	-1.5367	-0.0006227	-1.8459	-0.00074801	405.22612653187264	28.838	0.34467	28.917	28.807	29.152	0.078289					51	25	3	0	0	0	0.26011	1	3880	3880		0.26902	0	1	21971	+		6925	11064;7999	4643	4679	9558	9558					0.057811409419628035
HRIFFLFPH	9	Unmodified	_HRIFFLFPH_					0	0	0			REV__ENSG00000242550|ENST00000238508|SERPINB10;REV__nc|ENSG00000021355|P30740-2|SERPINB1	REV__ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	405.225821	1212.65563	0.066649	2.7008E-05	-2.1747	-0.00088125	-2.1081	-0.00085424	405.5587597961479	28.883	0.58106	28.883	28.739	29.32	0	-0.016713	-0.00043431	NaN	0.26902	43	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20944	+		6926	11064;7999	4643	4679							0.057811409419628035
HRILLLHLWG	10	Unmodified	_HRILLLHLWG_					0	0	0		ENST00000454036.6_2_20:44673649-44676200:+|nuORF	ENST00000454036.6_2_20:44673649-44676200:+|nuORF	ENST00000454036.6_2_20:44673649-44676200:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.2587280273438	2	629.382574	1256.7506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.512	1	84.535	84.035	85.035	0.023125								0	0	0	0.33861	1	20675	20675		1.8442	0	1				6927	6578	4644	4680	9559	9559					0.13249074413170092
HRLKMLTF	8	Unmodified	_HRLKMLTF_					0	0	0			REV__ENST00000437460.1_1_2:71405726-71405900:+|nuORF	REV__ENST00000437460.1_1_2:71405726-71405900:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038330078125	2	523.302404	1044.59026	0.56543	0.00029589	1.6083	0.00084163	2.1737	0.0011375	523.303285734493	85.191	0.71498	85.214	84.812	85.527	0.023125					55	29	2	0	0	0	0.52502	1	20852	20852		9.3474	3.6156	1	287440	+		6928	8954	4645	4681	9560	9560					0.06974403424601405
HRLKMLTF	8	Unmodified	_HRLKMLTF_					0	0	0			REV__ENST00000437460.1_1_2:71405726-71405900:+|nuORF	REV__ENST00000437460.1_1_2:71405726-71405900:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	523.302404	1044.59026	0.59602	0.0003119	1.8228	0.00095385	2.4188	0.0012658	523.3032990830341	85.149	0.55292	85.149	84.929	85.482	0	-0.032654	0.00011568	NaN	9.3474	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347910	+		6929	8954	4645	4681							0.06974403424601405
HRMRVECPVV	10	Unmodified	_HRMRVECPVV_					0	0	0		ENST00000393409.2_1_3:126752902-126753223:+|nuORF	ENST00000393409.2_1_3:126752902-126753223:+|nuORF	ENST00000393409.2_1_3:126752902-126753223:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.3153686523438	2	613.31826	1224.62197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.602	1	40.602	40.102	41.102	0								0	0	0	0.33959	1	7473	7473		0.40072	0.050084	1				6930	6320	4646	4682	9561	9561					0.018640281162561223
HRMWGHTHC	9	Unmodified	_HRMWGHTHC_					0	0	0		ENST00000372406.5_1_9:132898816-132898981:+|nuORF	ENST00000372406.5_1_9:132898816-132898981:+|nuORF	ENST00000372406.5_1_9:132898816-132898981:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7506713867188	2	582.750544	1163.48654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.58	1	117.59	117.09	118.09	0.013062								0	0	0	0.29525	1	29715	29715		0	0	1				6931	6217	4647	4683	9562	9562					-0.08866826954681528
HRNRGNGFRV	10	Unmodified	_HRNRGNGFRV_					0	0	0			REV__ENST00000482253.5_1_1:97187284-97189128:+|nuORF	REV__ENST00000482253.5_1_1:97187284-97189128:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.88702392578125	3	404.88675	1211.63842	-0.26471	-0.00010718	3.6488	0.0014774	3.3841	0.0013702	404.88729339818326	25.776	0.24096	25.868	25.72	25.961	0.091507					27	20	2	0	0	0	0.47318	1	2950	2950		0.13989	0.017027	1	12561	+		6932	12098	4648	4684	9563	9563					0.041066133888762124
HRPIIRTKK	9	Unmodified	_HRPIIRTKK_					0	0	0			REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.870849609375	2	574.872374	1147.73019	-0.062654	-3.6018E-05	-2.7899	-0.0016038	-2.8526	-0.0016399	574.870855577182	109.65	0.099968	109.65	109.57	109.67	0					16	10	2	0	0	0	0.33849	1	28206	28206		1.6526	0.45928	1	1524900	+		6933	9996	4649	4685	9564	9564					0.16223903753370905
HRQKRVSS	8	Unmodified	_HRQKRVSS_					0	0	0			REV__ENST00000508319.1_1_5:43294796-43294898:-|nuORF	REV__ENST00000508319.1_1_5:43294796-43294898:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2684631347656	2	499.286131	996.55771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.311	1	46.397	45.897	46.897	0.085617								0	0	0	0.38822	1	9071	9071		2.0598	0	1		+		6934	12241	4650	4686	9565	9565					0.05929332345999683
HRRFFVGCI	9	Unmodified	_HRRFFVGCI_					0	0	0			REV__chr17:40478648-40480700|486|11.63|0.36|5.0|-|1|TNS4,TNS4|1	REV__chr17:40478648-40480700|486|11.63|0.36|5.0|-|1|TNS4,TNS4|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2796020507812	2	567.803103	1133.59165	0.30204	0.0001715	-2.5946	-0.0014732	-2.2926	-0.0013017	567.8017468439501	84.036	0.45711	84.057	83.809	84.266	0.021744					17	16	2	0	0	0	0.24263	1	20522	20522		12.532	4.6214	1	47342	+		6935	7792	4651	4687	9566	9566					0.030200375133972557
HRRGKKGY	8	Unmodified	_HRRGKKGY_					0	0	0			REV__nc|ENSG00000164830|Q8N573-7|OXR1	REV__nc|ENSG00000164830|Q8N573-7|OXR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8147888183594	2	501.291217	1000.56788	0.41461	0.00020784	-2.1859	-0.0010958	-1.7713	-0.00088791	501.2900145803193	93.837	0.35799	93.876	93.703	94.061	0.038086					20	18	2	0	0	0	0.3576	1	23513	23513		2.3027	0.4585	1	150970	+		6936	12834	4652	4688	9567	9567					0.06761940071237404
HRRGKKGY	8	Unmodified	_HRRGKKGY_					0	0	0			REV__nc|ENSG00000164830|Q8N573-7|OXR1	REV__nc|ENSG00000164830|Q8N573-7|OXR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	501.291217	1000.56788	0.47661	0.00023892	-2.36	-0.0011831	-1.8834	-0.00094413	501.28992508508713	93.87	0.28257	93.87	93.658	93.941	0	-0.0026494	-0.00010632	NaN	2.3027	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119140	+		6937	12834	4652	4688							0.06761940071237404
HRRHARGR	8	Unmodified	_HRRHARGR_					0	0	0			REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.303466796875	2	523.302981	1044.59141	0.76525	0.00040046	-0.090503	-4.736E-05	0.67475	0.0003531	523.3027602411603	84.397	0.67575	84.397	84.309	84.985	0					68	41	2	0	0	0	0.53494	1	20888	20888		4.756	0.42677	1	901920	+		6938	10757	4653	4689	9568	9568					0.07089798628408062
HRRHVMQQ	8	Unmodified	_HRRHVMQQ_					0	0	0		nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2446899414062	2	546.285608	1090.55666	0.015791	8.6261E-06	0.42454	0.00023192	0.44033	0.00024054	546.2862064903844	34.033	0.16827	34.033	33.984	34.153	0					6	5	2	0	0	0	0.3576	1	5487	5487		2.5775	0	1	12919			6939	4442	4654	4690	9569	9569					0.01500794705430053
HRRKRRERPAI	11	Unmodified	_HRRKRRERPAI_					0	0	0		ENST00000462274.1_1_21:38739279-38845117:+|nuORF	ENST00000462274.1_1_21:38739279-38845117:+|nuORF	ENST00000462274.1_1_21:38739279-38845117:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.30303955078125	3	492.302786	1473.88653	0.32384	0.00015943	0.26831	0.00013209	0.59215	0.00029152	492.30285094184467	102.21	0.65179	102.21	102.01	102.66	0					104	43	3	0	0	0	0.4167	1	26203	26203		0.50596	0.09769	1	309160			6940	6617	4655	4691	9570	9570					0.16854161976539217
HRRKRRERPAI	11	Unmodified	_HRRKRRERPAI_					0	0	0		ENST00000462274.1_1_21:38739279-38845117:+|nuORF	ENST00000462274.1_1_21:38739279-38845117:+|nuORF	ENST00000462274.1_1_21:38739279-38845117:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.30279541015625	3	492.302786	1473.88653	0.44277	0.00021798	0.1865	9.1817E-05	0.62927	0.00030979	492.30272198782944	102.19	0.61497	102.23	102.03	102.65	0.042656					99	43	3	0	0	0	0.4167	1	26050	26050		0.50596	0.051438	1	145880			6941	6617	4655	4691	9571	9571					0.16854161976539217
HRRLHLHG	8	Unmodified	_HRRLHLHG_					0	0	0		ENST00000411861.5_1_11:2016794-2017130:-|nuORF	ENST00000411861.5_1_11:2016794-2017130:-|nuORF	ENST00000411861.5_1_11:2016794-2017130:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7586669921875	2	513.296833	1024.57911	0.43332	0.00022242	0.51787	0.00026582	0.95118	0.00048824	513.2970889504674	47.216	0.64497	47.216	46.967	47.612	0					42	21	3	0	0	0	0.3576	1	9591	9591		2.3027	0	1	137710			6942	6404	4656	4692	9572	9572					0.0678076216536283
HRRPSPRRLPR	11	Unmodified	_HRRPSPRRLPR_					0	0	0		ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.6235656738281	3	476.623748	1426.84942	0.010216	4.8692E-06	0.057347	2.7333E-05	0.067563	3.2202E-05	476.62368277398804	106.47	0.79475	106.49	106.23	107.03	0.025711					237	83	4	0	0	0	0.41693	2	27222	27222;27256		0.45452	0.45452	1	587200			6943	5616	4657	4693	9573;9574	9573					0.1530649043077119
HRRQLDRLLRR	11	Unmodified	_HRRQLDRLLRR_					0	0	0			REV__ENST00000520103.5_1_8:77896346-77913121:-|nuORF	REV__ENST00000520103.5_1_8:77896346-77913121:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.3140869140625	3	506.978191	1517.91274	0.1259	6.3826E-05	1.0524	0.00053356	1.1783	0.00059739	507.31359153725214	103.56	1.0068	103.56	103.03	104.03	0					122	90	2	0	0	0	0.4185	1	26625	26625		0.094841	0.094841	1	176690	+		6944	12292	4658	4694	9575	9575					0.17450431147995005
HRRQLDRLLRR	11	Unmodified	_HRRQLDRLLRR_					0	0	0			REV__ENST00000520103.5_1_8:77896346-77913121:-|nuORF	REV__ENST00000520103.5_1_8:77896346-77913121:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	506.978191	1517.91274	0.1259	6.3826E-05	1.0524	0.00053356	1.1783	0.00059739	507.31359153725214	103.56	1.0068	103.56	103.03	104.03	0	0.047696	0.0002426	NaN	0.094841	122	90	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176690	+		6945	12292	4658	4694							0.17450431147995005
HRRRQNMYE	9	Unmodified	_HRRRQNMYE_					0	0	0			REV__ERBB3|p.R1202Q|1|0.31|ENSG00000065361|chr12:56101631-56101631|G/A|missense_variant	REV__ERBB3|p.R1202Q|1|0.31|ENSG00000065361|chr12:56101631-56101631|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3169555664062	2	645.317637	1288.62072	0.24017	0.00015499	-0.54638	-0.00035259	-0.30621	-0.0001976	645.3173445641896	37.475	0.39315	37.475	37.364	37.758	0					19	13	2	0	0	0	0.34704	1	6523	6523		0.52476	0	1	36063	+		6946	12649	4659	4695	9576	9576					-0.012044699282569127
HRRWSHYV	8	Unmodified	_HRRWSHYV_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7935180664062	2	570.794124	1139.57369	0.10517	6.003E-05	-0.26176	-0.00014941	-0.15659	-8.9381E-05	570.7940933231595	35.763	0.89846	35.763	35.389	36.287	0					56	33	2	0	0	0	0.54097	1	6127	6127		0.69038	0.088878	1	47255	+		6947	8363	4660	4696	9577	9577					0.009490385828712533
HRRWSHYV	8	Unmodified	_HRRWSHYV_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7942504882812	2	570.794124	1139.57369	0.13789	7.8709E-05	-0.092505	-5.2801E-05	0.045388	2.5907E-05	570.7939732426142	35.621	0.98	35.7	35.252	36.232	0.078827					55	37	2	0	0	0	0.54097	1	5951	5951		0.69038	0.088878	1	50031	+		6948	8363	4660	4696	9578	9578					0.009490385828712533
HRSDAVFFTA	10	Unmodified	_HRSDAVFFTA_					0	0	0		ENST00000581229.5_1_17:27117407-27169789:-|nuORF	ENST00000581229.5_1_17:27117407-27169789:-|nuORF	ENST00000581229.5_1_17:27117407-27169789:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2374267578125	2	575.78563	1149.55671	0.063254	3.6421E-05	0.12233	7.0437E-05	0.18559	0.00010686	576.2874387610073	34.9	0.26572	34.9	34.822	35.088	0					9	8	2	0	0	0	0.31841	1	5750	5750		1.3295	0.13619	1	14279			6949	7221	4661	4697	9579	9579					-0.01208926813569633
HRSQYLDYMF	10	Unmodified	_HRSQYLDYMF_					0	0	0			REV__ENSG00000165934|ENST00000298875|CPSF2	REV__ENSG00000165934|ENST00000298875|CPSF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.26837158203125	3	453.876529	1358.60776	0.10756	4.8819E-05	-0.063481	-2.8813E-05	0.04408	2.0007E-05	454.2107671053631	39.643	0.49082	39.643	39.433	39.924	0					26	17	2	0	0	0	0.31851	1	7189	7189		0.77653	0	1	59403	+		6950	10054	4662	4698	9580	9580					-0.057203458310596034
HRSSRLSI	8	Unmodified	_HRSSRLSI_					0	0	0			REV__ENST00000258301.5_1_1:180957477-180959190:-|nuORF	REV__ENST00000258301.5_1_1:180957477-180959190:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2779235839844	2	478.275232	954.535912	0.28741	0.00013746	1.9964	0.00095482	2.2838	0.0010923	478.2769381212384	81.094	0.77318	81.118	80.771	81.544	0.023613					86	27	5	0	0	0	0.41706	1	19613	19613		24.021	1.2843	1	497600	+		6951	11222	4663	4699	9581	9581					0.05682527597423359
HRTQPSHDL	9	Unmodified	_HRTQPSHDL_					0	0	0			REV__ENST00000342409.3_1_10:14050444-14050501:-|nuORF	REV__ENST00000342409.3_1_10:14050444-14050501:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7733764648438	2	545.773054	1089.53155	0.22427	0.0001224	-0.14504	-7.9158E-05	0.079232	4.3243E-05	545.7729248452611	15.734	0.23023	15.807	15.691	15.921	0.0724					75	29	3	0	0	0	0.34704	1	530	530		0.52476	0	1	90756	+		6952	11467	4664	4700	9582	9582					-0.009629816161577764
HRTVWCRGGS	10	Unmodified	_HRTVWCRGGS_					0	0	0			REV__ENST00000575500.5_2_17:78178032-78182141:+|nuORF	REV__ENST00000575500.5_2_17:78178032-78182141:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7847290039062	2	579.782899	1157.55124	0.092074	5.3383E-05	2.4697	0.0014319	2.5618	0.0014853	579.7845135195679	32.687	0.35442	32.761	32.637	32.992	0.07378					28	16	2	0	0	0	0.46899	1	4992	4992		1.1933	0.50296	1	48849	+		6953	9406	4665	4701	9583	9583					-0.021229288770427956
HRTVWCRGGS	10	Unmodified	_HRTVWCRGGS_					0	0	0			REV__ENST00000575500.5_2_17:78178032-78182141:+|nuORF	REV__ENST00000575500.5_2_17:78178032-78182141:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	579.782899	1157.55124	0.092074	5.3383E-05	2.4697	0.0014319	2.5618	0.0014853	579.7845135195679	32.687	0.35442	32.761	32.637	32.992	0.07378	-0.017573	-0.00038083	NaN	1.1933	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48849	+		6954	9406	4665	4701							-0.021229288770427956
HRVDTSQEMS	10	Unmodified	_HRVDTSQEMS_					0	0	0		ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000186788|ENST00000445385|SPATA31D3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2670288085938	2	595.266944	1188.51934	0.42452	0.0002527	0.54647	0.0003253	0.971	0.000578	595.2671923971037	57.635	0.50495	57.635	57.463	57.968	0					29	17	2	0	0	0	0.44727	1	12682	12682		5.2969	0.76802	1	242400			6955	5091	4666	4702	9584	9584					-0.06738386141478259
HRVRERPL	8	Unmodified	_HRVRERPL_					0	0	0			REV__ENST00000505602.1_1_3:128598473-128598902:+|nuORF	REV__ENST00000505602.1_1_3:128598473-128598902:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8165283203125	2	531.817599	1061.62064	0.68511	0.00036435	-2.159	-0.0011482	-1.4739	-0.00078384	531.8164216674464	84.797	0.19257	84.82	84.758	84.95	0.023125					11	8	2	0	0	0	0.53557	1	20777	20777		4.3292	2.0265	1	147320	+		6956	12224	4667	4703	9585	9585					0.09229898134049108
HRVRERPL	8	Unmodified	_HRVRERPL_					0	0	0			REV__ENST00000505602.1_1_3:128598473-128598902:+|nuORF	REV__ENST00000505602.1_1_3:128598473-128598902:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.817138671875	2	531.817599	1061.62064	0.62734	0.00033363	-1.0408	-0.0005535	-0.41344	-0.00021987	531.8169825199466	85.795	0.91822	85.82	85.492	86.41	0.025169					61	33	3	0	0	0	0.53026	1	21040	21040		7.9102	2.6795	1	280160	+		6957	12224	4667	4703	9586	9586					0.09229898134049108
HRYNWYIRWSW	11	Unmodified	_HRYNWYIRWSW_					0	0	0			REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2720336914062	3	556.272381	1665.79531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.977	1	30.053	29.553	30.553	0.075403								0	0	0	0.34212	1	4168	4168		0	0	1		+		6958	13218	4668	4704	9587	9587					-0.010951465114658276
HSAGLLRGA	9	Unmodified	_HSAGLLRGA_					0	0	0			REV__ENST00000420329.6_1_15:91185432-91185957:+|nuORF	REV__ENST00000420329.6_1_15:91185432-91185957:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.25128173828125	2	441.251226	880.487899	-0.14075	-6.2107E-05	0.58367	0.00025755	0.44292	0.00019544	441.25141915690534	21.56	0.75487	21.56	21.402	22.157	0					138	71	3	0	0	0	0.17428	1	1864	1864		21.537	1.1224	1	119890	+		6959	11812	4669	4705	9588	9588					0.04287453677375197
HSALKGKA	8	Unmodified	_HSALKGKA_					0	0	0			REV__nc|ENSG00000147434|Q15825-2|CHRNA6	REV__nc|ENSG00000147434|Q15825-2|CHRNA6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.24273681640625	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.55	1	33.625	33.125	34.125	0.074322								0	0	0	0.38822	1	5232	5232		8.5933	3.3626	1		+		6960	9571	4670	4706	9589	9589					0.058369527914123864
HSAPTTRQTF	10	Unmodified	_HSAPTTRQTF_					0	0	0			REV__ENST00000378052.5_1_7:148991082-148992133:+|nuORF	REV__ENST00000378052.5_1_7:148991082-148992133:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3361206054688	2	573.288537	1144.56252	-0.61161	-0.00035063	-2.6915	-0.001543	-3.3031	-0.0018936	573.2867002339761	41.971	0.28495	41.971	41.8	42.084	0					15	9	2	0	0	0	0.31773	1	7880	7880		4.897	0.95262	1	28689	+		6961	11655	4671	4707	9590	9590					-0.003978283019250739
HSEEETMII	9	Unmodified	_HSEEETMII_					0	0	0			REV__ENSG00000100314|ENST00000216144|CABP7	REV__ENSG00000100314|ENST00000216144|CABP7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7928466796875	2	544.750064	1087.48558	0.16013	8.7232E-05	1.6946	0.00092311	1.8547	0.0010103	544.750943784621	72.742	0.36048	72.797	72.594	72.954	0.055931					16	11	2	0	0	0	0.2298	1	17072	17072		16.942	3.0362	1	123870	+		6962	8382	4672	4708	9591	9591					-0.05466807633251847
HSFISATVL	9	Unmodified	_HSFISATVL_					0	0	0		ENST00000295133.9_1_2:73483541-73483895:-|nuORF	ENST00000295133.9_1_2:73483541-73483895:-|nuORF	ENST00000295133.9_1_2:73483541-73483895:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7687683105469	2	487.768917	973.523281	0.26361	0.00012858	-0.071731	-3.4988E-05	0.19188	9.3594E-05	487.76878415929724	68.393	0.61732	68.393	68.158	68.775	0					48	21	3	0	0	0	0.10067	1	15957	15957		32.305	3.2239	1	257860			6963	5956	4673	4709	9592	9592					0.035460714145074235
HSFISATVL	9	Unmodified	_HSFISATVL_					0	0	0		ENST00000295133.9_1_2:73483541-73483895:-|nuORF	ENST00000295133.9_1_2:73483541-73483895:-|nuORF	ENST00000295133.9_1_2:73483541-73483895:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7690734863281	2	487.768917	973.523281	0.26264	0.00012811	0.1018	4.9652E-05	0.36444	0.00017776	487.7688511001194	68.286	0.5766	68.349	68.192	68.768	0.063507					38	21	2	0	0	0	0.14091	1	15779	15779		25.399	2.663	1	243640			6964	5956	4673	4709	9593	9593					0.035460714145074235
HSFRTTPF	8	Unmodified	_HSFRTTPF_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.75048828125	2	496.751059	991.487565	0.48334	0.0002401	-1.2418	-0.00061688	-0.75849	-0.00037678	496.7503759881299	68.024	0.57547	68.024	67.748	68.324	0					31	21	2	0	0	0	0.52924	1	15799	15799		8.5933	0.68312	1	69363	+		6965	10077	4674	4710	9594	9594					-0.00851966042478125
HSGALKPIFL	10	Unmodified	_HSGALKPIFL_					0	0	0			REV__ENSG00000112761|ENST00000368666|CCN6	REV__ENSG00000112761|ENST00000368666|CCN6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.8229370117188	2	541.821484	1081.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.27	1	106.3	105.8	106.8	0.029739								0	0	0	0.33905	1	27204	27204		1.3295	0.72803	1		+		6966	8724	4675	4711	9595	9595					0.09086612610917655
HSHCNDCCLNH	11	Unmodified	_HSHCNDCCLNH_					0	0	0			REV__ENST00000486082.5_1_1:27657613-27661179:+|nuORF	REV__ENST00000486082.5_1_1:27657613-27661179:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.7291259765625	2	641.729148	1281.44374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.16	1	105.19	104.69	105.69	0.034004								0	0	0	0.34212	1	26902	26902		0	0	1		+		6967	10707	4676	4712	9596	9596					-0.18572009865079053
HSHGHGGH	8	Unmodified	_HSHGHGGH_					0	0	0			REV__ENSG00000162695|ENST00000357650|SLC30A7	REV__ENSG00000162695|ENST00000357650|SLC30A7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	413.1934509277344	2	413.178592	824.342632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.366	1	73.366	72.866	73.866	0								0	0	0	0.38822	1	17433	17433		2.5775	0	1		+		6968	9901	4677	4713	9597	9597					-0.07656589398948199
HSLAGLWW	8	Unmodified	_HSLAGLWW_					0	0	0		ENST00000478824.1_1_17:46783758-46784010:+|nuORF	ENST00000478824.1_1_17:46783758-46784010:+|nuORF	ENST00000478824.1_1_17:46783758-46784010:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2508850097656	2	485.250695	968.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.009	1	36.009	35.509	36.509	0								0	0	0	0.38822	1	6090	6090		2.5775	0	1				6969	6730	4678	4714	9598	9598					0.0013323930846809162
HSLAGLWW	8	Unmodified	_HSLAGLWW_					0	0	0		ENST00000478824.1_1_17:46783758-46784010:+|nuORF	ENST00000478824.1_1_17:46783758-46784010:+|nuORF	ENST00000478824.1_1_17:46783758-46784010:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2507629394531	2	485.250695	968.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.322	1	30.397	29.897	30.897	0.075403								0	0	0	0.38822	1	4270	4270		2.5775	0	1				6970	6730	4678	4714	9599	9599					0.0013323930846809162
HSLEDYRK	8	Unmodified	_HSLEDYRK_					0	0	0		ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant;ENSG00000187527|ENST00000342358|ATP13A5	ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2844848632812	2	524.26453	1046.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.1	1	30.1	29.6	30.6	0								0	0	0	0.38822	1	4327	4327		0.69038	0	1				6971	69	4679	4715	9600	9600					-0.0068890222196387185
HSLPQEPVM	9	Oxidation (M)	_HSLPQEPVM(Oxidation (M))_		HSLPQEPVM(1)		HSLPQEPVM(90)	0	0	1		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.255126953125	2	527.255317	1052.49608	-0.046415	-2.4473E-05	-0.74013	-0.00039024	-0.78654	-0.00041471	527.254758911088	33.694	1.2144	33.694	33.08	34.294	0					124	45	5	0	0	0	0.0045224	2	5404	5364;5404		90.135	56.033	1	632150			6972	3919	4680	4716	9601;9602	9602		243			-0.028067801881888954
HSLPQEPVM	9	Oxidation (M)	_HSLPQEPVM(Oxidation (M))_		HSLPQEPVM(1)		HSLPQEPVM(100)	0	0	1		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2551879882812	2	527.255317	1052.49608	-0.041646	-2.1958E-05	-0.69276	-0.00036526	-0.7344	-0.00038722	527.2549426474935	33.625	1.2169	33.7	33.117	34.334	0.074322					135	49	4	0	0	0	0.0042616	2	5264	5224;5264		100.09	49.236	1	537070			6973	3919	4680	4716	9603;9604	9604		243			-0.028067801881888954
HSLPQEPVM	9	Oxidation (M)	_HSLPQEPVM(Oxidation (M))_		HSLPQEPVM(1)		HSLPQEPVM(60)	0	0	1		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2553100585938	2	527.255317	1052.49608	0.09674	5.1006E-05	0.062584	3.2998E-05	0.15932	8.4004E-05	527.2553116808923	35.422	1.5887	35.501	35.016	36.605	0.078831					145	63	3	0	0	0	0.017478	1	5810	5810		60.074	33.19	1	194880			6974	3919	4680	4716	9605	9605		243			-0.028067801881888954
HSLQATVHQ	9	Unmodified	_HSLQATVHQ_					0	0	0		ENSG00000187650|ENST00000339485|VMAC	ENSG00000187650|ENST00000339485|VMAC	ENSG00000187650|ENST00000339485|VMAC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7491149902344	2	510.764697	1019.51484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.227	1	52.294	51.794	52.794	0.067173								0	0	0	0.25992	1	10855	10855		7.2892	2.0586	1				6975	5126	4681	4717	9606	9606					0.0058651749790215035
HSNASQIMSYF	11	Unmodified	_HSNASQIMSYF_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.290283203125	2	642.787512	1283.56047	0.3938	0.00025313	2.2037	0.0014165	2.5975	0.0016696	642.7888521007064	67.578	0.9301	67.578	67.309	68.239	0					42	35	3	0	0	0	0.38984	1	15672	15672		6.6304	3.0339	1	172200	+		6976	10044	4682	4718	9607	9607					-0.06996625102033249
HSNASQIMSYF	11	Unmodified	_HSNASQIMSYF_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.7877197265625	2	642.787512	1283.56047	0.575	0.0003696	1.8025	0.0011586	2.3775	0.0015282	642.7889169319473	67.501	0.78268	67.566	67.264	68.046	0.065071					35	26	3	0	0	0	0.38984	1	15581	15581		6.6304	3.0339	1	163270	+		6977	10044	4682	4718	9608	9608					-0.06996625102033249
HSNASQIMSYF	11	Unmodified	_HSNASQIMSYF_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	642.787512	1283.56047	0.575	0.0003696	1.8025	0.0011586	2.3775	0.0015282	642.7889169319473	67.501	0.78268	67.566	67.264	68.046	0.065071	-0.0060054	-0.00034252	NaN	6.6304	35	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163270	+		6978	10044	4682	4718							-0.06996625102033249
HSNIYIFVH	9	Unmodified	_HSNIYIFVH_					0	0	0		ENST00000434667.3_2_21:33074682-33076121:-|nuORF	ENST00000434667.3_2_21:33074682-33076121:-|nuORF	ENST00000434667.3_2_21:33074682-33076121:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.314453125	2	565.293091	1128.57163	-0.36375	-0.00020562	-0.57507	-0.00032508	-0.93882	-0.00053071	565.795651211902	40.76	0.19871	40.76	40.623	40.822	0					10	6	2	0	0	0	0.25845	1	7522	7522		2.0598	0	1	22168			6979	6501	4683	4719	9609	9609					0.012485650544249438
HSNIYIFVH	9	Unmodified	_HSNIYIFVH_					0	0	0		ENST00000434667.3_2_21:33074682-33076121:-|nuORF	ENST00000434667.3_2_21:33074682-33076121:-|nuORF	ENST00000434667.3_2_21:33074682-33076121:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3139038085938	2	565.293091	1128.57163	-0.19366	-0.00010947	-0.17391	-9.831E-05	-0.36757	-0.00020778	565.2908947576881	40.642	0.25964	40.732	40.594	40.854	0.089642					13	9	2	0	0	0	0.25845	1	7381	7381		2.0598	0.21551	1	23782			6980	6501	4683	4719	9610	9610					0.012485650544249438
HSQNMRANSIQ	11	Unmodified	_HSQNMRANSIQ_					0	0	0		ENSG00000153060|ENST00000283025|TEKT5	ENSG00000153060|ENST00000283025|TEKT5	ENSG00000153060|ENST00000283025|TEKT5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3052978515625	2	643.306935	1284.59932	-0.02434	-1.5658E-05	-2.2796	-0.0014665	-2.3039	-0.0014821	643.3055212516128	45.935	0.33396	46.021	45.853	46.187	0.085617					19	12	2	0	0	0	0.40977	1	8986	8986		2.086	0.026257	1	73531			6981	3512	4684	4720	9611	9611					-0.03159899747652162
HSRRWFYRDK	10	Unmodified	_HSRRWFYRDK_					0	0	0			REV__ENSG00000166670|ENST00000279441|MMP10	REV__ENSG00000166670|ENST00000279441|MMP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.25335693359375	3	484.25321	1449.7378	-0.23918	-0.00011582	-0.72315	-0.00035019	-0.96233	-0.00046601	484.2528976635403	33.778	0.91606	33.852	33.571	34.487	0.074322					76	38	3	0	0	0	0.47446	1	5262	5262		0.15932	0.064481	1	69051	+		6982	10086	4685	4721	9612	9612					0.030920112829790014
HSRRWFYRDK	10	Unmodified	_HSRRWFYRDK_					0	0	0			REV__ENSG00000166670|ENST00000279441|MMP10	REV__ENSG00000166670|ENST00000279441|MMP10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	484.25321	1449.7378	-0.27484	-0.00013309	-0.5368	-0.00025995	-0.81165	-0.00039304	484.2528551444129	34.031	0.47282	34.031	33.883	34.356	0	0.089254	0.00020028	NaN	0.15932	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27346	+		6983	10086	4685	4721							0.030920112829790014
HSSDSFDDAF	10	Unmodified	_HSSDSFDDAF_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2174072265625	2	564.217443	1126.42033	0.5542	0.00031269	-2.6134	-0.0014745	-2.0592	-0.0011619	564.2167116740441	85.676	0.6712	85.702	85.337	86.008	0.025169					90	26	6	0	0	0	0.44246	1	21036	21036		6.2058	0.44535	1	386530			6984	2838	4686	4722	9613	9613					-0.13782085834759528
HSSPEDPVL	9	Unmodified	_HSSPEDPVL_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7375793457031	2	490.737814	979.461075	0.21341	0.00010473	-0.22333	-0.0001096	-0.0099231	-4.8697E-06	490.7375511428183	36.944	0.5636	36.944	36.776	37.34	0					46	21	3	0	0	0	0.29576	1	6366	6366		7.2892	0	1	94399			6985	5012	4687	4723	9614	9614					-0.02947699724472841
HSSPEDPVL	9	Unmodified	_HSSPEDPVL_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.92242431640625	2	490.737814	979.461075	0.20958	0.00010285	0.065294	3.2042E-05	0.27488	0.00013489	490.7376304955807	36.871	0.50671	36.953	36.79	37.297	0.081715					30	19	2	0	0	0	0.25174	1	6249	6249		7.2892	0	1	82074			6986	5012	4687	4723	9615	9615					-0.02947699724472841
HSVVSVYMCN	10	Unmodified	_HSVVSVYMCN_					0	0	0		ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7738037109375	2	569.754627	1137.4947	-0.046311	-2.6386E-05	-1.1608	-0.00066139	-1.2071	-0.00068777	569.7545101588892	46.108	0.30469	46.108	45.902	46.207	0					14	10	2	0	0	0	0.44246	1	9125	9125		6.2058	0.47393	1	32129			6987	4985	4688	4724	9616	9616					-0.06854737548565026
HSVWTIEWTI	10	Unmodified	_HSVWTIEWTI_					0	0	0			REV__FZD6|p.D452H|1|0.17|ENSG00000164930|chr8:103325460-103325460|G/C|missense_variant	REV__FZD6|p.D452H|1|0.17|ENSG00000164930|chr8:103325460-103325460|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.7984008789062	2	636.324588	1270.63462	0.3673	0.00023372	-0.066919	-4.2582E-05	0.30039	0.00019114	636.3245460371742	70.859	0.54045	70.859	70.618	71.158	0					30	18	2	0	0	0	0.30896	1	16707	16707		18.146	1.0335	1	107680	+		6988	12657	4689	4725	9617	9617					0.010130860517847395
HSYVELFLN	9	Unmodified	_HSYVELFLN_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7657470703125	2	561.284931	1120.55531	0.28567	0.00016034	-0.88968	-0.00049936	-0.60401	-0.00033902	561.2843663949448	39.247	0.31955	39.336	39.154	39.474	0.088562					23	13	2	0	0	0	0.25579	1	6963	6963		4.3292	0.13973	1	40815			6989	2354	4690	4726	9618	9618					-0.00014560902332050318
HTDPVDYEF	9	Unmodified	_HTDPVDYEF_					0	0	0		ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7411499023438	2	561.740554	1121.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.797	1	50.797	50.297	51.297	0								0	0	0	0.18435	1	10555	10555		20.454	0	1				6990	5010	4691	4727	9619	9619					-0.08932020932661544
HTDPVDYEF	9	Unmodified	_HTDPVDYEF_					0	0	0		ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.741455078125	2	561.740554	1121.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.689	1	50.762	50.262	51.262	0.07312								0	0	0	0.116	1	10390	10390		30.637	10.183	1				6991	5010	4691	4727	9620	9620					-0.08932020932661544
HTFTSFENSF	10	Unmodified	_HTFTSFENSF_					0	0	0			REV__nc|ENSG00000243414|Q86XR7-2|TICAM2	REV__nc|ENSG00000243414|Q86XR7-2|TICAM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.767822265625	2	608.767103	1215.51965	0.89206	0.00054306	0.34025	0.00020713	1.2323	0.00075019	608.7672814957924	80.366	0.48925	80.389	80.219	80.708	0.023613					44	17	4	0	0	0	0.44727	1	19479	19479		5.2969	0	1	203090	+		6992	12900	4692	4728	9621	9621					-0.07948643150007229
HTINGHNAEVR	11	Unmodified	_HTINGHNAEVR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8154907226562	2	624.315617	1246.61668	-0.6372	-0.00039781	0.21042	0.00013137	-0.42678	-0.00026645	624.3158424111944	17.575	0.24254	17.575	17.421	17.664	0					61	29	3	0	0	0	0.40891	3	958	933;958;963		2.2828	1.2113	1	27219			6993	2187	4693	4729	9622;9623;9624	9623					0.0032376384963299643
HTINGHNAEVR	11	Unmodified	_HTINGHNAEVR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.315673828125	2	624.315617	1246.61668	0.092386	5.7678E-05	-0.48487	-0.00030271	-0.39249	-0.00024504	624.3155133831345	17.475	0.31531	17.559	17.421	17.737	0.083696					84	38	3	0	0	0	0.41422	2	850	850;874		1.0715	0.5467	1	45563			6994	2187	4693	4729	9625;9626	9625					0.0032376384963299643
HTIRHVCI	8	Unmodified	_HTIRHVCI_					0	0	0			REV__L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|15|1|anti-sense	REV__L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|15|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.76800537109375	2	489.768729	977.522904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.52	1	98.52	98.02	99.02	0								0	0	0	0.38822	1	25095	25095		2.3027	0.24298	1		+		6995	12703	4694	4730	9627	9627					0.033243732136838844
HTKLNTEGD	9	Unmodified	_HTKLNTEGD_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2847900390625	2	507.74617	1013.47779	-0.25721	-0.0001306	-0.040581	-2.0605E-05	-0.29779	-0.0001512	507.7460057071016	25.441	0.31805	25.441	25.257	25.575	0					42	24	2	0	0	0	0.25787	1	2966	2966		2.9952	0.69251	1	23305	+		6996	7727	4695	4731	9628	9628					-0.028411988385187215
HTKLQELRP	9	Unmodified	_HTKLQELRP_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7660522460938	2	561.324922	1120.63529	0.19377	0.00010877	-0.81603	-0.00045806	-0.62226	-0.00034929	561.324240145767	34.759	0.43156	34.835	34.688	35.12	0.076248					37	18	3	0	0	0	0.25504	1	5606	5606		4.756	0	1	62882	+		6997	8081	4696	4732	9629	9629					0.07979925491486028
HTLLCPSLGRS	11	Unmodified	_HTLLCPSLGRS_					0	0	0		ENST00000361981.7_1_X:153127328-153128099:-|nuORF	ENST00000361981.7_1_X:153127328-153128099:-|nuORF	ENST00000361981.7_1_X:153127328-153128099:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.317626953125	2	592.31624	1182.61793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.224	1	69.287	68.787	69.787	0.062126								0	0	0	0.32823	1	16017	16017		4.897	0	1				6998	6165	4697	4733	9630	9630					0.033922618942142435
HTPDRVRNLF	10	Unmodified	_HTPDRVRNLF_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8480224609375	2	627.838728	1253.6629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.99	1	83.012	82.512	83.512	0.021744								0	0	0	0.32971	1	20212	20212		12.241	0.74595	1				6999	5652	4698	4734	9631	9631					0.04621828751760404
HTQGPVDGSLY	11	Unmodified	_HTQGPVDGSLY_					0	0	0		TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7645263671875	2	587.280377	1172.5462	-0.0095728	-5.6219E-06	-0.076219	-4.4762E-05	-0.085792	-5.0384E-05	587.2799585912454	40.326	0.24738	40.326	40.208	40.456	0					13	8	2	0	0	0	0.39906	1	7406	7406		4.5289	0.93237	1	43741			7000	2776	4699	4735	9632	9632					-0.03316954258639271
HTQKCLAL	8	Unmodified	_HTQKCLAL_					0	0	0			REV__ENST00000268251.12_1_16:8875406-8875859:+|nuORF	REV__ENST00000268251.12_1_16:8875406-8875859:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2643737792969	2	457.249837	912.485122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.101	1	78.131	77.631	78.631	0.030159								0	0	0	0.38822	1	18726	18726		5.7604	1.4312	1		+		7001	11268	4700	4736	9633	9633					0.02537862228200538
HTQSPGNLH	9	Unmodified	_HTQSPGNLH_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2587585449219	2	495.741222	989.467892	0.4289	0.00021262	2.5991	0.0012885	3.028	0.0015011	495.74245635183917	68.713	0.49457	68.775	68.431	68.926	0.062119					19	18	2	0	0	0	0.25845	1	15889	15889		2.0598	0.21551	1	46229			7002	4800	4701	4737	9634	9634					-0.02726342053222197
HTSNFWVT	8	Unmodified	_HTSNFWVT_					0	0	0			REV__ASAH2|p.L439F|1|0.25|ENSG00000188611|chr10:50211047-50211047|G/A|missense_variant	REV__ASAH2|p.L439F|1|0.25|ENSG00000188611|chr10:50211047-50211047|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2353820800781	2	496.235242	990.45593	0.19796	9.8236E-05	0.055258	2.7421E-05	0.25322	0.00012566	496.23511100337294	34.785	0.74404	34.861	34.592	35.336	0.076244					66	32	3	0	0	0	0.53557	1	5675	5675		4.3292	2.0265	1	51742	+		7003	7721	4702	4738	9635	9635					-0.039679587964201346
HTSPEDPCF	9	Unmodified	_HTSPEDPCF_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7280883789062	2	516.708199	1031.40185	0.21496	0.00011107	0.18841	9.7353E-05	0.40337	0.00020843	516.7083161023373	39.245	0.36329	39.334	39.072	39.435	0.088562					21	14	3	0	0	0	0.25579	1	6900	6900		4.3292	0.73274	1	37936			7004	603	4703	4739	9636	9636					-0.11259919010308295
HTTKKHCVI	9	Unmodified	_HTTKKHCVI_					0	0	0			REV__ENSG00000169598|ENST00000378209|DFFB	REV__ENSG00000169598|ENST00000378209|DFFB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2267456054688	2	533.794943	1065.57533	0.51935	0.00027722	-1.5918	-0.0008497	-1.0725	-0.00057247	533.7944845726447	88.235	0.6975	88.235	87.981	88.679	0					36	27	2	0	0	0	0.25787	1	21936	21936		2.9952	0.69251	1	125730	+		7005	10179	4704	4740	9637	9637					0.04516911556629566
HTTLHSFH	8	Unmodified	_HTTLHSFH_					0	0	0			REV__nc|ENSG00000105750|Q03923-2|ZNF85	REV__nc|ENSG00000105750|Q03923-2|ZNF85	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2407531738281	2	490.240858	978.467164	-0.16133	-7.9089E-05	0.45108	0.00022114	0.28975	0.00014205	490.24095881243073	26.804	0.30168	26.891	26.793	27.094	0.0867					31	19	2	0	0	0	0.53423	1	3240	3240		5.2307	0	1	36656	+		7006	8555	4705	4741	9638	9638					-0.022931367022806626
HTTLHSFH	8	Unmodified	_HTTLHSFH_					0	0	0			REV__nc|ENSG00000105750|Q03923-2|ZNF85	REV__nc|ENSG00000105750|Q03923-2|ZNF85	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	490.240858	978.467164	-0.16133	-7.9089E-05	0.45108	0.00022114	0.28975	0.00014205	490.24095881243073	26.804	0.30168	26.891	26.793	27.094	0.0867	-0.035839	3.8524E-05	NaN	5.2307	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36656	+		7007	8555	4705	4741							-0.022931367022806626
HTVNVSQVAR	10	Unmodified	_HTVNVSQVAR_					0	0	0			REV__ENST00000470518.5_1_22:40803281-40805023:+|nuORF	REV__ENST00000470518.5_1_22:40803281-40805023:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8040161132812	2	555.804354	1109.59415	-0.063749	-3.5432E-05	-0.037999	-2.112E-05	-0.10175	-5.6552E-05	555.8041694831028	24.154	0.27158	24.154	24.057	24.329	0					45	27	2	0	0	0	0.45133	1	2594	2594		4.5289	1.7937	1	21643	+		7008	8390	4706	4742	9639	9639					0.043741644520423506
HTVNVSQVAR	10	Unmodified	_HTVNVSQVAR_					0	0	0			REV__ENST00000470518.5_1_22:40803281-40805023:+|nuORF	REV__ENST00000470518.5_1_22:40803281-40805023:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	555.804354	1109.59415	-0.063749	-3.5432E-05	-0.037999	-2.112E-05	-0.10175	-5.6552E-05	555.8041694831028	24.154	0.27158	24.154	24.057	24.329	0	0.035718	0.00014156	NaN	4.5289	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21643	+		7009	8390	4706	4742							0.043741644520423506
HTVNVSQVAR	10	Unmodified	_HTVNVSQVAR_					0	0	0			REV__ENST00000470518.5_1_22:40803281-40805023:+|nuORF	REV__ENST00000470518.5_1_22:40803281-40805023:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	555.804354	1109.59415	0.24601	0.00013673	-0.27993	-0.00015559	-0.03393	-1.8858E-05	555.8041616790724	23.983	0.27959	24.083	23.947	24.227	0.099737	-0.035718	-0.00012737	NaN	4.5289	39	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25091	+		7010	8390	4706	4742							0.043741644520423506
HTVRFGAL	8	Unmodified	_HTVRFGAL_					0	0	0		ENST00000588938.1_1_19:39086232-39087718:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1	ENST00000588938.1_1_19:39086232-39087718:-|nuORF	ENST00000588938.1_1_19:39086232-39087718:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.19384765625	2	450.756144	899.497735	0.46242	0.00020844	-2.4591	-0.0011084	-1.9967	-0.00090001	450.75502997165006	57.157	0.3783	57.157	57	57.378	0					16	13	2	0	0	0	0.35759	1	12476	12476		14.838	0	1	39484			7011	1431	4707	4743	9640	9640					0.043966416827515786
HTVYMWDY	8	Unmodified	_HTVYMWDY_					0	0	0			REV__ENST00000361236.7_2_11:102267852-102267975:-|nuORF	REV__ENST00000361236.7_2_11:102267852-102267975:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7365112304688	2	557.73676	1113.45897	0.26089	0.00014551	-1.7238	-0.00096145	-1.463	-0.00081595	557.7358051585508	22.12	0.32083	22.221	22.083	22.404	0.10178					42	24	2	0	0	0	0.53858	1	1924	1924		2.3027	0.82083	1	27199	+		7012	11540	4708	4744	9641	9641					-0.09322451733942216
HTVYMWDY	8	Unmodified	_HTVYMWDY_					0	0	0			REV__ENST00000361236.7_2_11:102267852-102267975:-|nuORF	REV__ENST00000361236.7_2_11:102267852-102267975:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	557.73676	1113.45897	0.26089	0.00014551	-1.7238	-0.00096145	-1.463	-0.00081595	557.7358051585508	22.12	0.32083	22.221	22.083	22.404	0.10178	-0.046615	4.8393E-05	NaN	2.3027	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27199	+		7013	11540	4708	4744							-0.09322451733942216
HVAGYEHEL	9	Unmodified	_HVAGYEHEL_					0	0	0		ENST00000533223.1_1_11:117257895-117280842:+|nuORF;CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7506713867188	2	527.751256	1053.48796	-0.14906	-7.8668E-05	-0.27255	-0.00014384	-0.42162	-0.00022251	527.750928181266	28.925	0.44377	28.925	28.771	29.215	0					58	27	3	0	0	0	0.25979	2	3999	3958;3999		11.64	4.9171	1	37995			7014	123	4709	4745	9642;9643	9643					-0.03664591113283677
HVAGYEHEL	9	Unmodified	_HVAGYEHEL_					0	0	0		ENST00000533223.1_1_11:117257895-117280842:+|nuORF;CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.751220703125	2	527.751256	1053.48796	-0.14543	-7.6751E-05	0.044432	2.3449E-05	-0.101	-5.3302E-05	527.7511092939097	28.829	0.49867	28.908	28.744	29.242	0.078289					71	34	4	0	0	0	0.25979	2	3812	3812;3853		11.64	4.9171	1	42446			7015	123	4709	4745	9644;9645	9644					-0.03664591113283677
HVAQGDATL	9	Unmodified	_HVAQGDATL_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.2323303222656	2	456.232699	910.450845	-0.046256	-2.1104E-05	-0.1419	-6.4738E-05	-0.18815	-8.5841E-05	456.23255139107204	27.128	0.467	27.128	26.986	27.453	0					51	30	2	0	0	0	0.2125	1	3470	3470		17.113	4.5813	1	66071			7016	525	4710	4746	9646	9646					-0.007962626590369837
HVASSEFLSW	10	Unmodified	_HVASSEFLSW_					0	0	0			REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7803955078125	2	581.780013	1161.54547	0.62453	0.00036334	-0.56493	-0.00032867	0.0596	3.4674E-05	581.7799699030294	55.532	1.3341	55.597	54.758	56.092	0.065128					99	51	4	0	0	0	0.33099	1	11982	11982		19.257	0	1	1257500	+		7017	7761	4711	4747	9647	9647					-0.028837489077204737
HVASSEFLSW	10	Unmodified	_HVASSEFLSW_					0	0	0			REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	581.780013	1161.54547	0.62453	0.00036334	-0.56493	-0.00032867	0.0596	3.4674E-05	581.7799699030294	55.532	1.3341	55.597	54.758	56.092	0.065128	0.018333	-4.9909E-05	NaN	19.257	99	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1257500	+		7018	7761	4711	4747							-0.028837489077204737
HVAYDSTVNY	10	Unmodified	_HVAYDSTVNY_					0	0	0			REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7670288085938	2	584.767103	1167.51965	0.39227	0.00022939	0.43216	0.00025271	0.82443	0.0004821	584.7668252328835	52.563	0.96784	52.563	52.305	53.273	0					100	35	4	0	0	0	0.38104	1	11097	11097		13.906	1.6654	1	440470	+		7019	8056	4712	4748	9648	9648					-0.057406431500112376
HVAYDSTVNY	10	Unmodified	_HVAYDSTVNY_					0	0	0			REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7673950195312	2	584.767103	1167.51965	0.64991	0.00038005	-0.048214	-2.8194E-05	0.6017	0.00035185	584.7667515973026	52.528	0.81525	52.595	52.393	53.208	0.067169					69	33	3	0	0	0	0.42335	2	10930	10930;10985		9.3831	1.7742	1	461910	+		7020	8056	4712	4748	9649;9650	9649					-0.057406431500112376
HVCGHHLH	8	Unmodified	_HVCGHHLH_					0	0	0		ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2476806640625	2	470.221946	938.429338	-0.51635	-0.0002428	-0.92327	-0.00043414	-1.4396	-0.00067694	470.22155094466734	17.714	0.3092	17.714	17.557	17.867	0					44	36	2	0	0	0	0.3576	1	946	946		6.3541	2.0249	1	14623			7021	4848	4713	4749	9651	9651					-0.04233926168740254
HVDENDVQTV	10	Unmodified	_HVDENDVQTV_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.267578125	2	578.267467	1154.52038	-0.060069	-3.4736E-05	0.021664	1.2527E-05	-0.038405	-2.2209E-05	578.2674180787357	32.079	0.82791	32.079	31.753	32.581	0					94	34	4	0	0	0	0.44246	1	4950	4950		6.2058	0.9089	1	229290			7022	4858	4714	4750	9652	9652					-0.05069848500943408
HVDQDGLELL	10	Unmodified	_HVDQDGLELL_					0	0	0		nc|ENSG00000162924|Q04864|REL	nc|ENSG00000162924|Q04864|REL	nc|ENSG00000162924|Q04864|REL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7897338867188	2	569.790578	1137.5666	0.48229	0.0002748	-1.7101	-0.00097438	-1.2278	-0.00069958	569.7896314969573	70.26	0.72169	70.32	70.172	70.894	0.060562					36	28	2	0	0	0	0.40359	1	16346	16346		11.495	2.1116	1	239460			7023	7544	4715	4751	9653	9653					0.0033221640114788897
HVDTWVIAL	9	Unmodified	_HVDTWVIAL_					0	0	0		nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2904663085938	2	527.290017	1052.56548	0.081696	4.3077E-05	0.28932	0.00015256	0.37102	0.00019563	527.2902415565884	72.705	0.63539	72.761	72.461	73.097	0.055939					40	21	3	0	0	0	0.21398	1	17035	17035		16.942	5.302	1	321200			7024	4377	4716	4752	9654	9654					0.04130046822865552
HVEEFLLT	8	Unmodified	_HVEEFLLT_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2603454589844	2	494.260925	986.507297	0.27606	0.00013645	-1.1704	-0.00057849	-0.89436	-0.00044205	494.26010903873294	104.08	0.11234	104.08	104.06	104.17	0					13	10	2	0	0	0	0.53858	1	26776	26776		2.3027	0.24298	1	38738			7025	4978	4717	4753	9655	9655					0.01350365177609092
HVERELEEHKR	11	Unmodified	_HVERELEEHKR_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2578125	3	487.923418	1460.74842	0.039164	1.9109E-05	0.85048	0.00041497	0.88964	0.00043408	488.2580587951123	73.925	0.51732	73.925	73.744	74.262	0					37	18	3	0	0	0	0.40824	1	17593	17593		2.4348	0.18206	1	331090	+		7026	9295	4718	4754	9656	9656					0.03647949146738938
HVESILHLA	9	Unmodified	_HVESILHLA_					0	0	0		DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-3|DNAH2;DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7712707519531	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.836	1	58.907	58.407	59.407	0.070477								0	0	0	0.24995	1	12867	12867		9.3474	0.75416	1				7027	284	4719	4755	9657	9657					0.05265162680143476
HVEWLWSE	8	Unmodified	_HVEWLWSE_					0	0	0			REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2560424804688	2	543.256174	1084.49779	0.23496	0.00012764	-0.91308	-0.00049603	-0.67812	-0.00036839	543.2555830726519	18.059	0.20087	18.143	18.014	18.215	0.083696					59	24	3	0	0	0	0.53817	1	959	959		2.5775	0.27475	1	42107	+		7028	7744	4720	4756	9658	9658					-0.04107403107900609
HVEYEWRL	8	Unmodified	_HVEYEWRL_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.78369140625	2	566.282723	1130.55089	-0.28112	-0.00015919	-1.4146	-0.00080108	-1.6957	-0.00096027	566.7842459933551	24.458	0.13902	24.458	24.369	24.508	0					12	10	2	0	0	0	0.54097	1	2692	2692		0.69038	0	1	7744.1			7029	57	4721	4757	9659	9659					-0.009160253252503026
HVEYEWRL	8	Unmodified	_HVEYEWRL_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.280517578125	2	566.282723	1130.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.31	1	24.31	23.81	24.81	0								0	0	0	0.38822	1	2648	2648		0.69038	0.088878	1				7030	57	4721	4757	9660	9660					-0.009160253252503026
HVEYEWRL	8	Unmodified	_HVEYEWRL_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2804565429688	2	566.282723	1130.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.362	1	24.362	23.862	24.862	0								0	0	0	0.38822	1	2663	2663		0.69038	0.088878	1				7031	57	4721	4757	9661	9661					-0.009160253252503026
HVEYEWRL	8	Unmodified	_HVEYEWRL_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2815551757812	2	566.282723	1130.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.49	1	30.49	29.99	30.99	0								0	0	0	0.38822	1	4442	4442		0.69038	0.088878	1				7032	57	4721	4757	9662	9662					-0.009160253252503026
HVEYEWRL	8	Unmodified	_HVEYEWRL_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2806396484375	2	566.282723	1130.55089	-0.11268	-6.3809E-05	-2.4323	-0.0013774	-2.545	-0.0014412	566.2808081929143	25.764	0.37929	25.856	25.651	26.03	0.091507					51	30	3	0	0	0	0.54097	2	2903	2903;2923		0.69038	0.088878	1	20730			7033	57	4721	4757	9663;9664	9663					-0.009160253252503026
HVEYEWRL	8	Unmodified	_HVEYEWRL_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2806396484375	2	566.282723	1130.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.476	1	30.551	30.051	31.051	0.075403								0	0	0	0.38822	1	4316	4316		0.69038	0.088878	1				7034	57	4721	4757	9665	9665					-0.009160253252503026
HVFGVARIG	9	Unmodified	_HVFGVARIG_					0	0	0			REV__ENSG00000180801|ENST00000315366|ARSJ	REV__ENSG00000180801|ENST00000315366|ARSJ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.27685546875	2	478.277244	954.539935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.713	1	35.713	35.213	36.213	0								0	0	0	0.28527	1	6001	6001		2.0598	0.21551	1		+		7035	10513	4722	4758	9666	9666					0.060846170911418085
HVFQIDPATKR	11	Unmodified	_HVFQIDPATKR_					0	0	0		ENST00000599808.1_1_19:19049437-19049791:-|nuORF;nc|ENSG00000051128|Q9NSC5-4|HOMER3;nc|ENSG00000051128|Q9NSC5-3|HOMER3;nc|ENSG00000051128|Q9NSC5-5|HOMER3;nc|ENSG00000051128|Q9NSC5-2|HOMER3;ENSG00000051128|ENST00000392351|HOMER3	ENST00000599808.1_1_19:19049437-19049791:-|nuORF	ENST00000599808.1_1_19:19049437-19049791:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.9097900390625	3	437.910449	1310.70952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.79	1	31.864	31.364	32.364	0.073782								0	0	0	0.33897	1	4706	4706		1.1098	0.70149	1				7036	586	4723	4759	9667	9667					0.0665926858300736
HVGVIDYHD	9	Unmodified	_HVGVIDYHD_					0	0	0		tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7506103515625	2	527.751256	1053.48796	-0.14906	-7.8668E-05	-0.27255	-0.00014384	-0.42162	-0.00022251	527.750928181266	28.925	0.44377	28.925	28.771	29.215	0					58	27	3	0	0	0	0.3354	1	4037	4037		2.0598	1.2661	1	37995			7037	13475	4724	4760	9668	9668					-0.03664591113283677
HVHIHLLE	8	Unmodified	_HVHIHLLE_					0	0	0		ENST00000518139.5_1_5:149823851-149824075:-|nuORF	ENST00000518139.5_1_5:149823851-149824075:-|nuORF	ENST00000518139.5_1_5:149823851-149824075:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2809753417969	2	499.282526	996.550499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.253	1	73.306	72.806	73.806	0.052574								0	0	0	0.38822	1	17245	17245		10.183	1.5901	1				7038	6941	4725	4761	9669	9669					0.052085997455719735
HVHRAIYQ	8	Unmodified	_HVHRAIYQ_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|130|3|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|130|3|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|130|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.27734375	2	512.277775	1022.541	0.076161	3.9016E-05	-1.3978	-0.00071604	-1.3216	-0.00067702	512.2769947186017	21.542	0.27962	21.643	21.531	21.811	0.10178					46	28	2	0	0	0	0.54097	1	1803	1803		0.69038	0.16561	1	22813			7039	7352	4726	4762	9670	9670					0.030628314600335216
HVIDANSPL	9	Unmodified	_HVIDANSPL_					0	0	0		nc|ENSG00000187486|Q14654-2|KCNJ11;ENSG00000187486|ENST00000339994|KCNJ11	nc|ENSG00000187486|Q14654-2|KCNJ11	nc|ENSG00000187486|Q14654-2|KCNJ11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2571105957031	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.44	1	100.44	99.941	100.94	0								0	0	0	0.2722	1	25681	25681		4.756	2.4533	1				7040	5121	4727	4763	9671	9671					0.01412596892100737
HVIETLIGK	9	Unmodified	_HVIETLIGK_					0	0	0		nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	nc|ENSG00000150753|P48643-2|CCT5	nc|ENSG00000150753|P48643-2|CCT5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7518615722656	2	505.305667	1008.59678	-0.54794	-0.00027688	-0.27251	-0.0001377	-0.82045	-0.00041458	505.30535703071644	41.196	0.35764	41.196	40.996	41.354	0					19	12	2	0	0	0	0.25746	1	7664	7664		3.2813	0.97858	1	31182			7041	3436	4728	4764	9672	9672					0.09282619856992369
HVIGYLFTF	9	Unmodified	_HVIGYLFTF_					0	0	0			REV__tr|U7STI9|U7STI9_FUSNUNickel/cobalteffluxsystemOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01502PE=3SV=1	REV__tr|U7STI9|U7STI9_FUSNUNickel/cobalteffluxsystemOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01502PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.325927734375	2	548.794935	1095.57532	0.4977	0.00027313	0.25463	0.00013974	0.75233	0.00041288	549.2965863647322	100.07	0.21223	100.07	99.966	100.18	0					10	9	2	0	0	0	0.25809	1	25569	25569		2.3027	0	1	47884	+		7042	13173	4729	4765	9673	9673					0.031352348282553066
HVIHACGEI	9	Unmodified	_HVIHACGEI_					0	0	0			REV__nc|ENSG00000116761|P32929-3|CTH	REV__nc|ENSG00000116761|P32929-3|CTH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7437744140625	2	489.744919	977.475285	-0.62346	-0.00030534	-1.4843	-0.00072692	-2.1078	-0.0010323	489.7440904779664	41.596	0.83354	41.596	41.197	42.03	0					47	29	2	0	0	0	0.25979	1	7735	7735		11.64	0	1	71453	+		7043	8817	4730	4766	9674	9674					-0.014353257771631434
HVKYVWKM	8	Unmodified	_HVKYVWKM_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7960205078125	2	545.796955	1089.57936	-0.31129	-0.0001699	-1.4829	-0.00080935	-1.7942	-0.00097925	545.7960607185395	19.642	0.1545	19.642	19.571	19.725	0					23	18	2	0	0	0	0.54097	1	1398	1398		0.69038	0	1	19520			7044	2579	4731	4767	9675	9675					0.03815001050338651
HVKYVWKM	8	Unmodified	_HVKYVWKM_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.796955	1089.57936	0.134	7.3138E-05	-1.4786	-0.000807	-1.3446	-0.00073386	545.7960318160145	19.574	0.19994	19.669	19.576	19.776	0.095232	0.013338	1.9409E-06	NaN	0.69038	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12495			7045	2579	4731	4767							0.03815001050338651
HVLCQMQLL	9	Unmodified	_HVLCQMQLL_					0	0	0			REV__ENST00000441802.6_1_4:187519233-187521092:-|nuORF	REV__ENST00000441802.6_1_4:187519233-187521092:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2174682617188	2	542.78573	1083.55691	-0.18097	-9.8228E-05	-0.92326	-0.00050113	-1.1042	-0.00059936	542.7851048752498	42.295	0.49287	42.385	42.186	42.678	0.089764					26	17	2	0	0	0	0.25845	1	7845	7845		2.0598	0	1	69095	+		7046	11888	4732	4768	9676	9676					0.01847033590411229
HVLEEVESL	9	Unmodified	_HVLEEVESL_					0	0	0		ENST00000461212.5_1_1:212125793-212148678:-|nuORF;nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7	ENST00000461212.5_1_1:212125793-212148678:-|nuORF	ENST00000461212.5_1_1:212125793-212148678:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7733154296875	2	527.774396	1053.53424	0.576	0.000304	-0.026723	-1.4104E-05	0.54927	0.00028989	527.7740133684493	54.701	0.82765	54.701	54.553	55.38	0					71	33	4	0	0	0	0.037705	1	11815	11815		46.021	11.919	1	393990			7047	3165	4733	4769	9677	9677					0.00961428998152769
HVLEEVESL	9	Unmodified	_HVLEEVESL_					0	0	0		ENST00000461212.5_1_1:212125793-212148678:-|nuORF;nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7	ENST00000461212.5_1_1:212125793-212148678:-|nuORF	ENST00000461212.5_1_1:212125793-212148678:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.775390625	2	527.774396	1053.53424	0.57076	0.00030123	-1.2919	-0.00068183	-0.72114	-0.0003806	527.7736441673022	54.656	0.79086	54.721	54.544	55.335	0.065128					71	36	3	0	0	0	0.015682	1	11579	11579		61.357	29.052	1	294540			7048	3165	4733	4769	9678	9678					0.00961428998152769
HVPEVEVQVKR	11	Unmodified	_HVPEVEVQVKR_					0	0	0		ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.72967529296875	3	440.585854	1318.73573	0.020232	8.9138E-06	-0.014069	-6.1986E-06	0.0061628	2.7152E-06	440.58590130780874	30.753	0.70865	30.753	30.55	31.258	0					76	35	3	0	0	0	0.30965	1	4526	4526		14.838	11.251	1	68375			7049	5741	4734	4770	9679	9679					0.08911537754488563
HVPEVEVQVKR	11	Unmodified	_HVPEVEVQVKR_					0	0	0		ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.5858154296875	3	440.585854	1318.73573	-0.20684	-9.1132E-05	0.2712	0.00011949	0.064355	2.8354E-05	440.58598894694717	30.74	0.49982	30.815	30.662	31.162	0.074495					62	26	3	0	0	0	0.28294	1	4387	4387		19.987	16.111	1	74042			7050	5741	4734	4770	9680	9680					0.08911537754488563
HVQLAQGRN	9	Unmodified	_HVQLAQGRN_					0	0	0			REV__ENST00000461947.5_1_16:460332-462083:+|nuORF	REV__ENST00000461947.5_1_16:460332-462083:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2498779296875	2	511.778139	1021.54173	-0.20265	-0.00010371	0.75983	0.00038887	0.55718	0.00028515	511.779664003686	45.134	0.24374	45.134	44.994	45.238	0					11	8	2	0	0	0	0.25845	1	8872	8872		2.0598	0.21551	1	27871	+		7051	11065	4735	4771	9681	9681					0.03181626109096669
HVSDTSVVL	9	Unmodified	_HVSDTSVVL_					0	0	0		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P07744	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7555236816406	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.54	1	41.54	41.04	42.04	0								0	0	0	0.13043	1	7757	7757		28.487	2.1456	1			+	7052	219	4736	4772	9682	9682					0.01793177172248761
HVSDTSVVL	9	Unmodified	_HVSDTSVVL_					0	0	0		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P07744	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7555847167969	2	478.756007	955.497461	-0.64534	-0.00030896	-0.071032	-3.4007E-05	-0.71637	-0.00034296	478.7558899424527	41.451	1.7233	41.541	41.089	42.812	0.089764					148	66	4	0	0	0	0.12809	1	7609	7609		26.884	5.3467	1	966490		+	7053	219	4736	4772	9683	9683					0.01793177172248761
HVTQEDFEM	9	Oxidation (M)	_HVTQEDFEM(Oxidation (M))_		HVTQEDFEM(1)		HVTQEDFEM(120)	0	0	1		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2373657226562	2	576.237321	1150.46009	-0.10679	-6.1536E-05	0.29261	0.00016861	0.18582	0.00010708	576.2374698485766	31.898	1.7859	31.898	31.649	33.434	0					191	75	4	0	0	0	0.0016755	3	4864	4821;4864;4911		117.76	92.361	1	637710			7054	989	4737	4773	9684;9685;9686	9685		59			-0.10912282155686626
HVTQEDFEM	9	Oxidation (M)	_HVTQEDFEM(Oxidation (M))_		HVTQEDFEM(1)		HVTQEDFEM(83)	0	0	1		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2374877929688	2	576.237321	1150.46009	0.048617	2.8015E-05	0.042692	2.4601E-05	0.091309	5.2616E-05	576.237366117624	34.368	3.036	34.368	33.223	36.259	0					275	114	4	0	0	0	0.0047429	5	5608	5565;5608;5654;5700;5750		83.429	62.975	1	224670			7055	989	4737	4773	9687;9688;9689;9690;9691	9688		59			-0.10912282155686626
HVTQEDFEM	9	Oxidation (M)	_HVTQEDFEM(Oxidation (M))_		HVTQEDFEM(1)		HVTQEDFEM(130)	0	0	1		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2373657226562	2	576.237321	1150.46009	-0.048874	-2.8163E-05	0.18011	0.00010378	0.13123	7.562E-05	576.2374400223658	31.842	1.5114	31.916	31.697	33.209	0.07378					183	72	5	0	0	0	0.00066972	3	4730	4686;4730;4772		128.93	99.851	1	505670			7056	989	4737	4773	9692;9693;9694	9693		59			-0.10912282155686626
HVTQEDFEM	9	Oxidation (M)	_HVTQEDFEM(Oxidation (M))_		HVTQEDFEM(1)		HVTQEDFEM(72)	0	0	1		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2374267578125	2	576.237321	1150.46009	0.091607	5.2787E-05	0.22419	0.00012919	0.3158	0.00018197	576.2373710265024	34.295	2.9643	34.371	33.211	36.175	0.076244					225	121	3	0	0	0	0.0085356	7	5474	5379;5434;5474;5521;5563;5607;5657		71.708	56.87	1	195890			7057	989	4737	4773	9695;9696;9697;9698;9699;9700;9701	9697		59			-0.10912282155686626
HVTQEDFEM	9	Unmodified	_HVTQEDFEM_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2400512695312	2	568.239864	1134.46517	-0.15881	-9.0243E-05	0.13947	7.9251E-05	-0.019344	-1.0992E-05	568.2398310880419	43.47	0.71338	43.47	43.231	43.945	0					51	25	3	0	0	0	0.14444	2	8332	8332;8384		24.991	7.8781	1	180450			7058	989	4737	4774	9702;9703	9702					-0.09667978293077795
HVTQEDFEM	9	Unmodified	_HVTQEDFEM_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2398681640625	2	568.239864	1134.46517	-0.059414	-3.3761E-05	0.067555	3.8387E-05	0.008141	4.626E-06	568.2399387310173	43.388	0.66553	43.477	43.236	43.901	0.088924					49	23	3	0	0	0	0.088609	1	8190	8190		34.932	12.196	1	153240			7059	989	4737	4774	9704	9704					-0.09667978293077795
HVVAKKKMVQR	11	Unmodified	_HVVAKKKMVQR_					0	0	0			REV__ENST00000298999.7_2_10:99923151-99968013:+|nuORF	REV__ENST00000298999.7_2_10:99923151-99968013:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.16632080078125	3	441.939575	1322.79689	0.14577	6.4422E-05	0.74335	0.00032852	0.88912	0.00039294	442.2742063090506	51.739	0.32875	51.809	51.531	51.86	0.069878					16	11	3	0	0	0	0.31101	1	10644	10644		0.45452	0.1855	1	74575	+		7060	11338	4738	4775	9705	9705					0.1484077125294334
HVVDGFRLS	9	Unmodified	_HVVDGFRLS_					0	0	0			REV__nc|ENSG00000104299|Q9NV88-3|INTS9	REV__nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2766723632812	2	515.277441	1028.54033	-0.087414	-4.5043E-05	-1.3027	-0.00067126	-1.3901	-0.0007163	515.2766215277555	42.896	0.35056	42.986	42.812	43.162	0.089767					24	13	2	0	0	0	0.32614	1	8046	8046		3.2813	0.28607	1	67500	+		7061	8501	4739	4776	9706	9706					0.02719992020342943
HVVPHLHGQ	9	Unmodified	_HVVPHLHGQ_					0	0	0		ENST00000303277.6_1_4:1718988-1719900:-|nuORF	ENST00000303277.6_1_4:1718988-1719900:-|nuORF	ENST00000303277.6_1_4:1718988-1719900:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2774047851562	2	512.277775	1022.541	-0.26437	-0.00013543	-0.93227	-0.00047758	-1.1966	-0.00061301	512.2772184740294	21.728	0.25903	21.728	21.601	21.86	0					47	24	3	0	0	0	0.33704	1	1954	1954		1.8442	0.19162	1	26786			7062	5980	4740	4777	9707	9707					0.030628314600335216
HVVPNEVVVQR	11	Unmodified	_HVVPNEVVVQR_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14;nc|ENSG00000148180|P06396|GSN;ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.51593017578125	3	425.910449	1274.70952	-0.074984	-3.1936E-05	0.20245	8.6227E-05	0.12747	5.429E-05	425.9104635012121	34.537	0.48425	34.614	34.425	34.909	0.076244					42	21	3	0	0	0	0.40316	1	5501	5501		3.5927	0.52041	1	38063		+	7063	232	4741	4778	9708	9708					0.08315268583032775
HVVPSAEEL	9	Unmodified	_HVVPSAEEL_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7551574707031	2	490.756007	979.497461	-0.58225	-0.00028574	-0.58733	-0.00028824	-1.1696	-0.00057398	490.7556958892701	41.564	0.55947	41.564	41.324	41.884	0					36	20	2	0	0	0	0.12809	1	7767	7767		26.884	11.036	1	79671			7064	4907	4742	4779	9709	9709					0.006891771722393969
HVVPSAEEL	9	Unmodified	_HVVPSAEEL_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7559509277344	2	490.756007	979.497461	-0.4219	-0.00020705	-0.25072	-0.00012304	-0.67263	-0.00033009	490.75577567466866	41.447	0.59787	41.537	41.295	41.893	0.089764					39	23	2	0	0	0	0.18364	1	7595	7595		20.454	9.6297	1	68866			7065	4907	4742	4779	9710	9710					0.006891771722393969
HVVSLVHRSLE	11	Unmodified	_HVVSLVHRSLE_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.864013671875	2	638.362036	1274.70952	-0.046218	-2.9504E-05	0.46594	0.00029744	0.41972	0.00026793	638.362174361256	34.646	0.21936	34.646	34.535	34.754	0					11	8	2	0	0	0	0.41713	1	5698	5698		0.26902	0	1	30956			7066	2453	4743	4780	9711	9711					0.08315268583032775
HVWERHRL	8	Unmodified	_HVWERHRL_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8001098632812	2	566.809774	1131.60499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.54	1	100.58	100.08	101.08	0.042839								0	0	0	0.38822	1	25555	25555		2.3027	0	1		+		7067	8236	4744	4781	9712	9712					0.04445611616984024
HVWGWLML	8	Unmodified	_HVWGWLML_					0	0	0		PTH2R|p.S193Rfs*8|1|0.42|ENSG00000144407|chr2:208443417-208443417|C/-|frameshift_variant;ENSG00000144407|ENST00000272847|PTH2R	PTH2R|p.S193Rfs*8|1|0.42|ENSG00000144407|chr2:208443417-208443417|C/-|frameshift_variant	PTH2R|p.S193Rfs*8|1|0.42|ENSG00000144407|chr2:208443417-208443417|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7820434570312	2	521.270573	1040.52659	0.00085722	4.4685E-07	-3.6558	-0.0019057	-3.6549	-0.0019052	521.268188885326	45.419	0.25343	45.507	45.449	45.703	0.087543					10	8	2	0	0	0	0.3576	1	8832	8832		6.3541	1.1234	1	23101			7068	3208	4745	4782	9713	9713					0.00795042987533634
HVYQDDIS	8	Unmodified	_HVYQDDIS_					0	0	0			REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.721923828125	2	488.722164	975.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.206	1	34.282	33.782	34.782	0.076244								0	0	0	0.38822	1	5429	5429		4.756	0.42677	1		+		7069	12790	4746	4783	9714	9714					-0.0589227275858093
HVYQDDIS	8	Unmodified	_HVYQDDIS_					0	0	0			REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7216491699219	2	488.722164	975.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.27	1	34.347	33.847	34.847	0.076244								0	0	0	0.38822	1	5447	5447		4.756	0.42677	1		+		7070	12790	4746	4783	9715	9715					-0.0589227275858093
HWFCILRL	8	Unmodified	_HWFCILRL_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|234|2|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|234|2|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|234|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2972412109375	2	544.297122	1086.57969	-0.035146	-1.913E-05	-0.52279	-0.00028455	-0.55794	-0.00030368	544.2967709126139	31.516	0.20055	31.59	31.515	31.715	0.073782					12	9	2	0	0	0	0.54081	1	4622	4622		0.79363	0.10326	1	13752			7071	7397	4747	4784	9716	9716					0.039864207701839405
HWFLANVYPE	10	Unmodified	_HWFLANVYPE_					0	0	0		ENSG00000131386|ENST00000339732|GALNT15;ENST00000489467.1_1_3:16254210-16261548:+|nuORF	ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.8764343261719	3	425.876746	1274.60841	-0.040834	-1.739E-05	-0.53861	-0.00022938	-0.57944	-0.00024677	425.8764822074692	24.829	0.80673	24.829	24.494	25.301	0					85	61	2	0	0	0	0.46608	1	2770	2770		1.7423	0.14999	1	36745			7072	2527	4748	4785	9717	9717					-0.017911831196897765
HWHPDPAL	8	Unmodified	_HWHPDPAL_					0	0	0		ENST00000336138.3_1_8:143816880-143817129:+|nuORF	ENST00000336138.3_1_8:143816880-143817129:+|nuORF	ENST00000336138.3_1_8:143816880-143817129:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7378845214844	2	486.737951	971.46135	-0.038034	-1.8512E-05	-0.99253	-0.0004831	-1.0306	-0.00050162	486.7373642261601	71.981	1.0002	72.036	71.566	72.566	0.055939					58	35	2	0	0	0	0.51887	1	16846	16846		10.183	0.83596	1	161740			7073	6074	4749	4786	9718	9718					-0.025522352139660143
HWINMKTIL	9	Unmodified	_HWINMKTIL_					0	0	0		ENSG00000197888|ENST00000317746|UGT2B17;ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000197888|ENST00000317746|UGT2B17	ENSG00000197888|ENST00000317746|UGT2B17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3212280273438	2	578.320794	1154.62703	0.22653	0.00013101	-0.080016	-4.6275E-05	0.14652	8.4733E-05	578.3206485732105	86.492	1.2259	86.492	85.605	86.831	0					85	48	2	0	0	0	0.31136	1	21420	21420		5.2307	0.90143	1	502780			7074	5241	4750	4787	9719	9719					0.05590655250534837
HWLFFIVGFKA	11	Unmodified	_HWLFFIVGFKA_					0	0	0			REV__ENSG00000256394|ENST00000537611|ASIC5	REV__ENSG00000256394|ENST00000537611|ASIC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.5890197753906	3	455.588648	1363.74411	0.091412	4.1646E-05	1.4853	0.00067668	1.5767	0.00071833	455.58917446265446	49.623	0.55424	49.699	49.456	50.01	0.076607					44	19	3	0	0	0	0.41309	1	10054	10054		1.3296	0.31607	1	224440	+		7075	11097	4751	4788	9720	9720					0.07679136461797498
HWLFWPLL	8	Unmodified	_HWLFWPLL_					0	0	0			REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF	REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.30859375	2	556.308013	1110.60147	0.66162	0.00036807	-0.68745	-0.00038243	-0.02583	-1.4369E-05	556.3076425311945	84.304	0.52727	84.325	83.866	84.393	0.021744					37	23	3	0	0	0	0.53257	1	20558	20558		6.3541	1.5981	1	565210	+		7076	11397	4752	4789	9721	9721					0.05059548790404733
HWLSVTREE	9	Unmodified	_HWLSVTREE_					0	0	0			REV__MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant	REV__MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7909545898438	2	578.790912	1155.56727	0.18994	0.00010994	0.41233	0.00023865	0.60227	0.00034859	578.7909931861442	38.636	4.7442	38.636	37.194	41.938	0					318	171	4	0	0	0	0.32614	1	7149	7149		3.2813	0.78282	1	440870	+		7077	10514	4753	4790	9722	9722					-0.004289441591254217
HWMFVMDNI	9	Unmodified	_HWMFVMDNI_					0	0	0		MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant	MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant	MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7667846679688	2	596.767537	1191.52052	-0.010197	-6.0853E-06	2.6318	0.0015706	2.6216	0.0015645	596.7670829253807	105.29	0.36813	105.29	105.13	105.5	0					115	38	4	0	0	0	0.18364	1	27115	27115		20.454	5.2051	1	146730			7078	7427	4754	4791	9723	9723					-0.06757843306286304
HWMFVMDNI	9	Unmodified	_HWMFVMDNI_					0	0	0		MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant	MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant	MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7664184570312	2	596.767537	1191.52052	0.16381	9.7759E-05	2.4236	0.0014463	2.5874	0.0015441	596.7670394133711	105.25	0.42387	105.29	105.07	105.5	0.034004					136	45	4	0	0	0	0.10067	1	26918	26918		32.305	3.811	1	143080			7079	7427	4754	4791	9724	9724					-0.06757843306286304
HWNARLAL	8	Unmodified	_HWNARLAL_					0	0	0			REV__nc|ENSG00000185339|P20062-2|TCN2	REV__nc|ENSG00000185339|P20062-2|TCN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7740173339844	2	490.774868	979.535184	0.14236	6.9867E-05	-1.43	-0.00070183	-1.2877	-0.00063196	490.774166282021	51.585	0.55261	51.585	51.358	51.91	0					39	18	3	0	0	0	0.52924	1	10772	10772		8.5933	0	1	194660	+		7080	12860	4755	4792	9725	9725					0.044597329483508474
HWRFSHWR	8	Unmodified	_HWRFSHWR_					0	0	0			REV__ENST00000378797.6_2_13:46916808-46917036:-|nuORF	REV__ENST00000378797.6_2_13:46916808-46917036:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.30029296875	2	606.302116	1210.58968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.21	1	106.21	105.71	106.71	0								0	0	0	0.38822	1	27381	27381		0.79363	0.19213	1		+		7081	11659	4756	4793	9726	9726					-0.007192551802063463
HWRYDLRRPSF	11	Unmodified	_HWRYDLRRPSF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2889404296875	3	511.600498	1531.77966	0.35085	0.00017949	1.7819	0.00091163	2.1328	0.0010911	511.934692469528	52.893	0.11445	52.958	52.879	52.994	0.06543					6	4	2	0	0	0	0.31097	1	11058	11058		1.2148	0.70888	1	44476			7082	4133	4757	4794	9727	9727					0.03504566971469103
HYAALAHYF	9	Unmodified	_HYAALAHYF_					0	0	0		ENST00000566346.2_1_16:33401403-33412789:+|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2	ENST00000566346.2_1_16:33401403-33412789:+|nuORF	ENST00000566346.2_1_16:33401403-33412789:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7554931640625	2	546.766709	1091.51886	0.29834	0.00016312	0.49718	0.00027184	0.79551	0.00043496	546.7668700457027	48.178	0.80363	48.178	47.911	48.714	0					52	27	3	0	0	0	0.038949	1	9793	9793		45.75	32.242	1	125260			7083	2552	4758	4795	9728	9728					-0.023233930084188614
HYAALAHYF	9	Unmodified	_HYAALAHYF_					0	0	0		ENST00000566346.2_1_16:33401403-33412789:+|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2	ENST00000566346.2_1_16:33401403-33412789:+|nuORF	ENST00000566346.2_1_16:33401403-33412789:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.766845703125	2	546.766709	1091.51886	0.47229	0.00025823	0.19075	0.0001043	0.66305	0.00036253	546.7667215016676	48.038	0.79396	48.118	47.813	48.607	0.080029					46	27	2	0	0	0	0.0044274	3	9572	9572;9629;9704		93.763	75.628	1	139810			7084	2552	4758	4795	9729;9730;9731	9729					-0.023233930084188614
HYADVLGLLL	10	Unmodified	_HYADVLGLLL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.319091796875	2	557.318774	1112.623	0.34009	0.00018954	0.2775	0.00015466	0.61759	0.0003442	557.3188875591921	86.168	0.67486	86.168	85.985	86.66	0					64	25	3	0	0	0	0.28643	1	21367	21367		24.021	5.6475	1	695420			7085	772	4759	4796	9732	9732					0.07118889028470221
HYADVLGLLL	10	Unmodified	_HYADVLGLLL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3191528320312	2	557.318774	1112.623	0.58317	0.00032501	0.047444	2.6441E-05	0.63061	0.00035145	557.318720602798	86.264	0.703	86.289	85.925	86.628	0.025169					67	26	3	0	0	0	0.22666	1	21208	21208		30.637	6.8468	1	515970			7086	772	4759	4796	9733	9733					0.07118889028470221
HYAKLNFVI	9	Unmodified	_HYAKLNFVI_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.797607421875	2	552.813659	1103.61277	0.55712	0.00030798	-0.71084	-0.00039296	-0.15372	-8.4981E-05	552.8131285495967	53.1	0.56471	53.165	52.955	53.519	0.06543					44	27	2	0	0	0	0.18479	1	11089	11089		26.884	11.036	1	117960			7087	5267	4760	4797	9734	9734					0.06510326093894037
HYAKLNFVI	9	Unmodified	_HYAKLNFVI_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	552.813659	1103.61277	0.33771	0.00018669	-0.90318	-0.00049929	-0.56547	-0.0003126	552.8130848530574	53.096	0.4896	53.096	52.921	53.41	0	-0.034399	-0.00010317	NaN	26.884	38	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113470			7088	5267	4760	4797							0.06510326093894037
HYALNTWLF	9	Unmodified	_HYALNTWLF_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7958984375	2	582.795466	1163.57638	0.51381	0.00029945	1.1703	0.00068204	1.6841	0.00098149	582.796036504339	76.047	1.0269	76.047	75.948	76.975	0					87	48	2	0	0	0	0.03472	2	18247	18247;18290		47.749	9.5341	1	1715600			7089	4415	4761	4798	9735;9736	9735					0.0011344919719249447
HYALNTWLF	9	Unmodified	_HYALNTWLF_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.79638671875	2	582.795466	1163.57638	0.62226	0.00036265	1.0724	0.00062499	1.6947	0.00098764	582.7960144454128	76.076	1.0873	76.116	75.908	76.996	0.03923					85	50	2	0	0	0	0.01063	1	18092	18092		65.235	25.278	1	1520700			7090	4415	4761	4798	9737	9737					0.0011344919719249447
HYATLYFVF	9	Unmodified	_HYATLYFVF_					0	0	0		nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN	nc|ENSG00000157823|P59780-2|AP3S2	nc|ENSG00000157823|P59780-2|AP3S2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7925415039062	2	580.792392	1159.57023	0.3936	0.0002286	-0.14021	-8.1434E-05	0.25338	0.00014716	580.7923547013237	78.087	2.1809	78.087	77.716	79.897	0					140	75	4	0	0	0	0.16036	2	18935	18935;18981		23.148	6.7917	1	1941200			7091	3666	4762	4799	9738;9739	9738					-0.003170690343267779
HYATLYFVF	9	Unmodified	_HYATLYFVF_					0	0	0		nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN	nc|ENSG00000157823|P59780-2|AP3S2	nc|ENSG00000157823|P59780-2|AP3S2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7926635742188	2	580.792392	1159.57023	0.6346	0.00036857	-0.21642	-0.00012569	0.41819	0.00024288	580.7923114604212	78.008	1.7051	78.043	77.822	79.527	0.034485					121	59	4	0	0	0	0.1182	2	18768	18768;18814		28.487	9.506	1	1960500			7092	3666	4762	4799	9740;9741	9740					-0.003170690343267779
HYAYSFKYL	9	Unmodified	_HYAYSFKYL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7976684570312	2	596.295299	1190.57605	0.084657	5.0481E-05	-0.025591	-1.526E-05	0.059066	3.5221E-05	596.2949807916954	50.671	0.60232	50.671	50.404	51.006	0					50	20	3	0	0	0	0.065576	1	10523	10523		39.95	25.111	1	208190			7093	1624	4763	4800	9742	9742					-0.01161970522662159
HYAYSFKYL	9	Unmodified	_HYAYSFKYL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.29541015625	2	596.295299	1190.57605	0.10559	6.2961E-05	0.061437	3.6634E-05	0.16702	9.9595E-05	596.2951943586155	50.508	0.59676	50.581	50.385	50.982	0.07312					52	21	4	0	0	0	0.08788	1	10326	10326		49.554	31.408	1	241370			7094	1624	4763	4800	9743	9743					-0.01161970522662159
HYDAVEAEL	9	Unmodified	_HYDAVEAEL_					0	0	0		ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A;ENSG00000145945|ENST00000648326|FAM50B	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.291259765625	2	523.743096	1045.47164	-0.069171	-3.6228E-05	0.12416	6.5029E-05	0.054991	2.8801E-05	523.7430553174623	45.917	0.6806	45.917	45.703	46.384	0					49	23	4	0	0	0	0.20194	1	9082	9082		24.021	7.8715	1	110750			7095	773	4764	4801	9744	9744					-0.049277170700406714
HYDAVEAEL	9	Unmodified	_HYDAVEAEL_					0	0	0		ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A;ENSG00000145945|ENST00000648326|FAM50B	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2915649414062	2	523.743096	1045.47164	-0.0273	-1.4298E-05	0.22776	0.00011929	0.20046	0.00010499	523.7429240261573	45.811	0.72546	45.896	45.701	46.426	0.085617					44	27	3	0	0	0	0.24791	1	8912	8912		10.074	1.9184	1	78961			7096	773	4764	4801	9745	9745					-0.049277170700406714
HYDEETSHQL	10	Unmodified	_HYDEETSHQL_					0	0	0		ENSG00000164761|ENST00000297350|TNFRSF11B	ENSG00000164761|ENST00000297350|TNFRSF11B	ENSG00000164761|ENST00000297350|TNFRSF11B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5150451660156	3	420.182675	1257.52619	-0.018023	-7.5728E-06	2.6221	0.0011018	2.6041	0.0010942	420.51788056207556	73.112	0.4027	73.165	72.836	73.239	0.052574					23	13	3	0	0	0	0.31853	1	17223	17223		0.62683	0	1	102150			7097	4031	4765	4802	9746	9746					-0.09226749989261407
HYDIPKVSW	9	Unmodified	_HYDIPKVSW_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7755126953125	2	572.792924	1143.57129	0.35754	0.0002048	-0.24465	-0.00014013	0.11289	6.4663E-05	572.7925622287862	57.479	0.38761	57.547	57.337	57.724	0.068375					29	14	3	0	0	0	0.25209	1	12509	12509		12.532	1.7076	1	103530			7098	1447	4766	4803	9747	9747					0.005251453345636037
HYDIPKVSW	9	Unmodified	_HYDIPKVSW_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7749633789062	2	572.792924	1143.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.773	1	55.838	55.338	56.338	0.065128								0	0	0	0.23452	1	11936	11936		12.532	1.7076	1				7099	1447	4766	4803	9748	9748					0.005251453345636037
HYEDYGDYW	9	Unmodified	_HYEDYGDYW_					0	0	0		ENSG00000130234|ENST00000252519|ACE2	ENSG00000130234|ENST00000252519|ACE2	ENSG00000130234|ENST00000252519|ACE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.2363891601562	2	624.235635	1246.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.273	1	15.345	14.845	15.845	0.072399								0	0	0	0.2927	1	465	465		0.52476	0	1				7100	2460	4767	4804	9749	9749					-0.15665208938025899
HYGFCDVI	8	Unmodified	_HYGFCDVI_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2134094238281	2	477.212921	952.411288	9.6634E-05	4.6115E-08	0.018326	8.7454E-06	0.018423	8.7915E-06	477.2128690954129	51.073	0.45435	51.143	50.996	51.451	0.069874					23	17	2	0	0	0	0.53858	1	10526	10526		2.3027	0	1	56871			7101	2281	4768	4805	9750	9750					-0.06682105934123683
HYGLLFDEF	9	Unmodified	_HYGLLFDEF_					0	0	0		ENST00000518735.1_1_5:153405944-153406840:-|nuORF;ENSG00000055147|ENST00000351797|FAM114A2	ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENST00000518735.1_1_5:153405944-153406840:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7708129882812	2	570.771657	1139.52876	0.25687	0.00014661	-0.70026	-0.00039969	-0.44339	-0.00025308	570.7709618265028	77.682	1.0183	77.682	77.429	78.448	0					75	35	3	0	0	0	0.0065046	1	18741	18741		77.984	55.248	1	609900			7102	610	4769	4806	9751	9751					-0.035422497936679065
HYGLLFDEF	9	Unmodified	_HYGLLFDEF_					0	0	0		ENST00000518735.1_1_5:153405944-153406840:-|nuORF;ENSG00000055147|ENST00000351797|FAM114A2	ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENST00000518735.1_1_5:153405944-153406840:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7711181640625	2	570.771657	1139.52876	0.41692	0.00023797	-0.3054	-0.00017432	0.11152	6.365E-05	570.7711644002695	77.66	0.81178	77.695	77.417	78.229	0.034485					62	27	3	0	0	0	0.030375	1	18577	18577		50.855	28.119	1	577200			7103	610	4769	4806	9752	9752					-0.035422497936679065
HYIDAGYLGF	10	Unmodified	_HYIDAGYLGF_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.27783203125	2	578.277106	1154.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.106	1	69.168	68.668	69.668	0.062126								0	0	0	0.32245	1	15980	15980		14.838	0	1				7104	1884	4770	4807	9753	9753					-0.03142847419394457
HYIFTTLDL	9	Unmodified	_HYIFTTLDL_					0	0	0		nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2;nc|ENSG00000164418|Q13002-4|GRIK2;GRIK2|p.K848Ifs*12|1|0.1|ENSG00000164418|chr6:102055560-102055561|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2	nc|ENSG00000164418|Q13002-3|GRIK2	nc|ENSG00000164418|Q13002-3|GRIK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.79541015625	2	561.795132	1121.57571	0.65129	0.00036589	0.045601	2.5619E-05	0.6969	0.00039151	561.7950794700674	92.698	0.99436	92.734	92.452	93.447	0.036522					116	39	6	0	0	0	0.3182	1	23301	23301		4.3292	0.38484	1	4253600			7105	4010	4771	4808	9754	9754					0.019786097574751693
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2933349609375	2	589.293091	1176.57163	0.7221	0.00042553	-0.012835	-7.5634E-06	0.70926	0.00041796	589.2929953953324	54.247	2.1333	54.247	53.96	56.094	0					222	82	3	0	0	0	3.5002999999999997E-22	8	11651	11559;11602;11651;11695;11738;11833;11903;12138		214.41	170.64	1	3074800			7106	3933	4772	4809	9755;9756;9757;9758;9759;9760;9761;9762	9757					-0.009594349455710471
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2932739257812	2	589.293091	1176.57163	0.74602	0.00043962	-0.022269	-1.3123E-05	0.72375	0.0004265	589.2929871596166	54.209	2.7606	54.274	53.838	56.599	0.065128					245	113	5	0	0	0	1.9495E-17	8	11448	11403;11448;11493;11536;11578;11627;11678;11761		198.25	154.48	1	2898600			7107	3933	4772	4809	9763;9764;9765;9766;9767;9768;9769;9770	9764					-0.009594349455710471
HYIYIENQF	9	Unmodified	_HYIYIENQF_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.7959594726562	2	613.795663	1225.57677	0.086034	5.2808E-05	0.072923	4.476E-05	0.15896	9.7567E-05	613.795772519101	57.347	0.36894	57.347	57.065	57.434	0					20	12	2	0	0	0	0.24767	1	12542	12542		13.042	8.7132	1	88869			7108	829	4773	4810	9771	9771					-0.02699175873635795
HYKPTPLYF	9	Unmodified	_HYKPTPLYF_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;nc|ENSG00000113810|Q9NTJ3-2|SMC4	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.3059692382812	2	583.305667	1164.59678	0.50538	0.00029479	0.05417	3.1598E-05	0.55955	0.00032639	583.3056369279236	47.623	3.7133	47.623	47.321	51.034	0					269	129	5	0	0	0	0.0046402	7	9605	9555;9605;9652;9940;9991;10047;10172		85.642	63.895	1	2109300			7109	1817	4774	4811	9772;9773;9774;9775;9776;9777;9778	9773					0.02106619856999714
HYKPTPLYF	9	Unmodified	_HYKPTPLYF_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;nc|ENSG00000113810|Q9NTJ3-2|SMC4	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3059692382812	2	583.305667	1164.59678	0.74571	0.00043497	-0.1959	-0.00011427	0.54981	0.00032071	583.3055024146015	47.454	2.8388	47.537	47.269	50.107	0.083096					238	103	4	0	0	0	0.0046402	9	9417	9370;9417;9461;9714;9800;9835;9931;9978;10019		85.642	63.895	1	2718700			7110	1817	4774	4811	9779;9780;9781;9782;9783;9784;9785;9786;9787	9780					0.02106619856999714
HYKWRTEK	8	Unmodified	_HYKWRTEK_					0	0	0			REV__ENSG00000140297|ENST00000396065|GCNT3	REV__ENSG00000140297|ENST00000396065|GCNT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.724853515625	2	574.30399	1146.59343	0.45034	0.00025863	-0.23275	-0.00013367	0.21759	0.00012497	574.3040000974551	53.757	0.12603	53.822	53.74	53.866	0.06543					6	4	2	0	0	0	0.3576	1	11327	11327		2.8892	0	1	53602	+		7111	9364	4775	4812	9788	9788					0.025993698029878942
HYLDQLNHI	9	Unmodified	_HYLDQLNHI_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.7652587890625	2	576.793455	1151.57236	0.44637	0.00025746	-0.70509	-0.00040669	-0.25872	-0.00014923	576.7930545910826	47.41	0.31895	47.41	47.293	47.612	0					16	10	2	0	0	0	0.21622	1	9551	9551		21.537	6.6987	1	54552			7112	1151	4776	4813	9789	9789					0.002633597034673585
HYLDQLNHI	9	Unmodified	_HYLDQLNHI_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.7933959960938	2	576.793455	1151.57236	0.45894	0.00026471	-0.59736	-0.00034455	-0.13842	-7.984E-05	576.7931664168229	47.298	0.3709	47.381	47.244	47.615	0.083096					19	14	2	0	0	0	0.27929	1	9392	9392		9.3831	1.473	1	56290			7113	1151	4776	4813	9790	9790					0.002633597034673585
HYLDTTTLI	9	Unmodified	_HYLDTTTLI_					0	0	0		nc|ENSG00000167193|P46108-2|CRK;ENSG00000167193|ENST00000300574|CRK;ENSG00000099942|ENST00000354336|CRKL	nc|ENSG00000167193|P46108-2|CRK;ENSG00000099942|ENST00000354336|CRKL	nc|ENSG00000167193|P46108-2|CRK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.784423828125	2	538.784764	1075.55498	0.36138	0.0001947	-0.23271	-0.00012538	0.12866	6.9322E-05	538.7845028296287	59.661	1.2242	59.733	59.379	60.603	0.072342					114	45	3	0	0	0	0.065541	1	13084	13084		39.957	5.8549	1	868590			7114	4203;1140	4777	4814	9791	9791					0.02022019377795914
HYLEVGPMLAE	11	Unmodified	_HYLEVGPMLAE_					0	0	0			REV__nc|ENSG00000130052|Q92502|STARD8	REV__nc|ENSG00000130052|Q92502|STARD8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.82177734375	2	629.810456	1257.60636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.092	1	67.157	66.657	67.657	0.065071								0	0	0	0.32586	1	15372	15372		5.7319	0.97584	1		+		7115	9046	4778	4815	9792	9792					-0.012139799197484535
HYLFCDMYI	9	Unmodified	_HYLFCDMYI_					0	0	0		nc|ENSG00000262628|P47884|OR1D4;ENSG00000262628|ENST00000575751|OR1D5	nc|ENSG00000262628|P47884|OR1D4	nc|ENSG00000262628|P47884|OR1D4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.7611083984375	2	602.76192	1203.50929	0.078409	4.7262E-05	-0.40565	-0.00024451	-0.32724	-0.00019725	602.761670617664	42.948	0.64545	43.037	42.781	43.426	0.089764					35	23	2	0	0	0	0.3354	1	8138	8138		2.0598	0.21551	1	51210			7116	5723	4779	4816	9793	9793					-0.08432665400437145
HYLLLPYLL	9	Unmodified	_HYLLLPYLL_					0	0	0		ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8056030273438	2	572.841885	1143.66922	0.31584	0.00018093	-0.45542	-0.00026088	-0.13958	-7.9955E-05	572.8415574475284	88.749	0.90398	88.749	88.486	89.39	0					76	37	3	0	0	0	0.237	1	22151	22151		14.582	2.0501	1	273530			7117	2783	4780	4817	9794	9794					0.10312953930565527
HYLLLPYLL	9	Unmodified	_HYLLLPYLL_					0	0	0		ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.8056640625	2	572.841885	1143.66922	0.32353	0.00018533	-0.6467	-0.00037046	-0.32317	-0.00018513	572.8414460668109	88.642	0.89245	88.674	88.463	89.355	0.032257					77	36	3	0	0	0	0.16859	1	21965	21965		20.871	2.7362	1	334540			7118	2783	4780	4817	9795	9795					0.10312953930565527
HYLMLSHFF	9	Unmodified	_HYLMLSHFF_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8189697265625	2	597.791869	1193.56919	0.65493	0.00039151	0.70064	0.00041884	1.3556	0.00081035	597.7921114903802	65.942	0.10913	65.942	65.879	65.988	0					5	3	2	0	0	0	0.24749	1	15173	15173		9.3474	0.60203	1	190450	+		7119	9730	4781	4818	9796	9796					-0.019856066749071033
HYLYIVPFYFF	11	Unmodified	_HYLYIVPFYFF_					0	0	0			REV__nc|ENSG00000153066|Q6PKC3-3|TXNDC11	REV__nc|ENSG00000153066|Q6PKC3-3|TXNDC11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.8023986816406	3	503.591946	1507.75401	0.43619	0.00021966	1.518	0.00076444	1.9542	0.0009841	503.59269281165314	97.109	0.20066	97.109	97.057	97.258	0					12	9	2	0	0	0	0.31096	1	24673	24673		1.4551	0.24029	1	80663	+		7120	9686	4782	4819	9797	9797					0.020442796764882587
HYLYQIAHL	9	Unmodified	_HYLYQIAHL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.308837890625	2	579.308741	1156.60293	0.27592	0.00015984	-0.11299	-6.5458E-05	0.16292	9.4383E-05	579.3085420191842	52.739	1.3153	52.739	52.424	53.739	0					113	50	3	0	0	0	0.0076571	3	11157	11109;11157;11200		74.423	34.473	1	585120			7121	5191	4783	4820	9798;9799;9800	9799					0.030891380884895625
HYLYQIAHL	9	Unmodified	_HYLYQIAHL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3087768554688	2	579.308741	1156.60293	0.46701	0.00027054	-0.27261	-0.00015793	0.1944	0.00011262	579.3083842842904	52.673	0.96765	52.74	52.466	53.434	0.067169					111	41	4	0	0	0	0.0076571	3	10991	10947;10991;11041		74.423	41.637	1	540650			7122	5191	4783	4820	9801;9802;9803	9802					0.030891380884895625
HYMSINDSF	9	Oxidation (M)	_HYM(Oxidation (M))SINDSF_		HYM(1)SINDSF		HYM(54)SINDSF	0	0	1		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;BICD2-IPPK|1|fusion	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2342529296875	2	565.234581	1128.45461	-0.2205	-0.00012464	-0.37874	-0.00021408	-0.59924	-0.00033871	565.2342845172044	44.561	2.022	44.561	43.595	45.617	0					125	71	3	0	0	0	0.026209	2	8650	8650;8690		53.833	33.483	1	154910			7123	88	4784	4821	9804;9805	9804		2			-0.10447960947499269
HYMSINDSF	9	Oxidation (M)	_HYM(Oxidation (M))SINDSF_		HYM(1)SINDSF		HYM(58)SINDSF	0	0	1		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;BICD2-IPPK|1|fusion	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2345581054688	2	565.234581	1128.45461	-0.0021173	-1.1968E-06	-0.22146	-0.00012518	-0.22358	-0.00012638	565.2343343476127	44.473	1.5285	44.561	43.949	45.477	0.087543					87	55	2	0	0	0	0.020768	1	8501	8501		57.722	34.986	1	152890			7124	88	4784	4821	9806	9806		2			-0.10447960947499269
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8220825195312	2	629.822015	1257.62948	0.49952	0.00031461	-0.17093	-0.00010765	0.3286	0.00020696	629.8217997793718	65.224	2.4029	65.224	64.945	67.348	0					239	89	5	0	0	0	0.00081324	9	15059	14919;14969;15014;15059;15107;15163;15202;15251;15303		146.01	109.88	1	2408200			7125	4604	4785	4822	9807;9808;9809;9810;9811;9812;9813;9814;9815	9810					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8229370117188	2	629.822015	1257.62948	0.29727	0.00018723	0.30896	0.00019459	0.60623	0.00038182	630.3238322203251	67.712	0.384	67.712	67.428	67.812	0					19	14	2	0	0	0	0.15482	1	15685	15685		32.305	22.232	1	142470			7126	4604	4785	4822	9816	9816					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.80908203125	2	629.822015	1257.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.297	1	71.297	70.797	71.797	0								0	0	0	0.25573	1	16801	16801		7.9102	2.1783	1				7127	4604	4785	4822	9817	9817					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.822021484375	2	629.822015	1257.62948	0.49568	0.00031219	-0.17165	-0.00010811	0.32402	0.00020408	629.8217907365147	65.161	3.0648	65.23	64.959	68.024	0.068916					245	114	4	0	0	0	0.00081324	9	14793	14751;14793;14837;14884;14926;14979;15041;15088;15134		146.01	102.15	1	3749300			7128	4604	4785	4822	9818;9819;9820;9821;9822;9823;9824;9825;9826	9819					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.2170715332031	3	420.217102	1257.62948	0.28512	0.00011981	-0.56419	-0.00023708	-0.27907	-0.00011727	420.2167565813072	65.163	0.39149	65.232	65.061	65.452	0.068909					21	14	2	0	0	0	0.2546	1	14799	14799		12.241	9.1067	1	241700			7129	4604	4785	4822	9827	9827					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	420.217102	1257.62948	0.80664	0.00033896	-1.7802	-0.00074807	-0.97357	-0.00040911	420.21627533440767	65.233	0.38586	65.233	65.137	65.523	0	0.000408	-0.00091142	NaN	12.241	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153040			7130	4604	4785	4822							0.0109682697984681
HYPDFLVQI	9	Unmodified	_HYPDFLVQI_					0	0	0		nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;ENSG00000155066|ENST00000317620|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2957153320312	2	566.295299	1130.57605	-0.078149	-4.4256E-05	0.48202	0.00027296	0.40387	0.00022871	566.2957242648191	72.463	0.71602	72.463	71.889	72.605	0					42	24	3	0	0	0	0.24021	1	17166	17166		13.906	0	1	215040			7131	3576	4786	4823	9828	9828					0.015980294773271453
HYPDFLVQI	9	Unmodified	_HYPDFLVQI_					0	0	0		nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;ENSG00000155066|ENST00000317620|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2955322265625	2	566.295299	1130.57605	0.096961	5.4909E-05	0.10637	6.0236E-05	0.20333	0.00011515	566.2955720814844	72.404	0.50953	72.46	72.117	72.627	0.055939					39	17	3	0	0	0	0.24021	1	16974	16974		13.906	0	1	185400			7132	3576	4786	4823	9829	9829					0.015980294773271453
HYPLFCAL	8	Unmodified	_HYPLFCAL_					0	0	0			REV__ENSG00000119714|ENST00000650645|GPR68	REV__ENSG00000119714|ENST00000650645|GPR68	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2420654296875	2	482.241481	962.468409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.917	1	70.975	70.475	71.475	0.058578								0	0	0	0.38822	1	16531	16531		2.8892	0.31174	1		+		7133	8858	4787	4824	9830	9830					-0.014326386577636185
HYPLTTLRF	9	Unmodified	_HYPLTTLRF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3167724609375	2	574.316566	1146.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.078	1	53.078	52.578	53.578	0								0	0	0	0.16196	1	11249	11249		23.79	4.5328	1				7134	2544	4788	4825	9831	9831					0.05113424605565342
HYPLTTLRF	9	Unmodified	_HYPLTTLRF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.3167114257812	2	574.316566	1146.61858	0.36229	0.00020807	-0.42577	-0.00024453	-0.063479	-3.6457E-05	574.316495319743	52.971	1.7694	53.036	52.63	54.4	0.06543					126	76	4	0	0	0	0.2125	2	11086	11042;11086		17.113	2.8575	1	658270			7135	2544	4788	4825	9832;9833	9833					0.05113424605565342
HYPQRRSCW	9	Unmodified	_HYPQRRSCW_					0	0	0		ENST00000328965.8_2_11:120099983-120100535:+|nuORF	ENST00000328965.8_2_11:120099983-120100535:+|nuORF	ENST00000328965.8_2_11:120099983-120100535:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7903442382812	2	616.790724	1231.56689	-0.21346	-0.00013166	-1.093	-0.00067416	-1.3065	-0.00080582	616.7900692773153	37.839	0.90603	37.839	37.52	38.426	0					58	30	3	0	0	0	0.34754	1	6567	6567		0.45834	0.057624	1	102280			7136	6051	4789	4826	9834	9834					-0.03962642359988422
HYQDVSCLQF	10	Unmodified	_HYQDVSCLQF_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.2767333984375	2	620.27678	1238.53901	-0.17868	-0.00011083	0.15128	9.3837E-05	-0.027394	-1.6992E-05	620.276932375462	59.349	1.5969	59.349	59.123	60.72	0					115	60	3	0	0	0	0.18348	3	13199	13199;13270;13326		35.612	21.997	1	454420			7137	679	4790	4827	9835;9836;9837	9835					-0.07072010130741546
HYQDVSCLQF	10	Unmodified	_HYQDVSCLQF_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.763427734375	2	620.27678	1238.53901	-0.11003	-6.825E-05	-0.049234	-3.0539E-05	-0.15926	-9.8788E-05	620.2768762386473	59.285	1.3663	59.357	59.095	60.461	0.072342					105	52	3	0	0	0	0.20704	4	12972	12972;13034;13102;13154		32.898	17.649	1	371990			7138	679	4790	4827	9838;9839;9840;9841	9838					-0.07072010130741546
HYRSHHPTL	9	Unmodified	_HYRSHHPTL_					0	0	0		nc|ENSG00000158966|Q5VU97-2|CACHD1;ENSG00000158966|ENST00000651257|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2911376953125	2	574.291414	1146.56827	0.1274	7.3162E-05	-1.1589	-0.00066557	-1.0315	-0.0005924	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.22083	1	6529	6529		16.149	2.2431	1	8357100			7139	3709	4791	4828	9842	9842					0.0008531500043318374
HYRSSVGHG	9	Unmodified	_HYRSSVGHG_					0	0	0			REV__ENSG00000146839|ENST00000613979|ZAN	REV__ENSG00000146839|ENST00000613979|ZAN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.24139404296875	2	500.24139	998.468226	0.2093	0.0001047	-0.24645	-0.00012328	-0.037149	-1.8584E-05	500.241128848946	36.326	1.3576	36.326	35.892	37.25	0					101	52	3	0	0	0	0.3182	1	6314	6314		4.3292	0.73274	1	64335	+		7140	9551	4792	4829	9843	9843					-0.03106922333370221
HYSLFPLLF	9	Unmodified	_HYSLFPLLF_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8106689453125	2	568.810585	1135.60662	0.51188	0.00029116	-0.098381	-5.596E-05	0.4135	0.0002352	568.810416367424	92.816	1.0589	92.854	92.643	93.702	0.037369					82	43	3	0	0	0	0.1182	1	23211	23211		28.487	8.0332	1	534700			7141	3711	4793	4830	9844	9844					0.04423807862372087
HYSLFPLLF	9	Unmodified	_HYSLFPLLF_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	568.810585	1135.60662	0.55003	0.00031286	-0.094541	-5.3776E-05	0.45549	0.00025909	568.8104272476035	92.913	1.1352	92.913	92.634	93.77	0	0.029801	2.1507E-06	NaN	28.487	110	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729730			7142	3711	4793	4830							0.04423807862372087
HYSPIYLSF	9	Unmodified	_HYSPIYLSF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-5|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7821655273438	2	563.782025	1125.5495	0.39993	0.00022547	-0.19065	-0.00010748	0.20928	0.00011799	563.7819663358459	68.377	1.111	68.377	68.021	69.132	0					99	40	4	0	0	0	0.0045547	2	15909	15909;15955		88.904	43.204	1	1441600			7143	883	4794	4831	9845;9846	9845					-0.008256594140220841
HYSPIYLSF	9	Unmodified	_HYSPIYLSF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-5|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7922973632812	2	563.782025	1125.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.185	1	69.185	68.685	69.685	0								0	0	0	0.1048	1	16158	16158		32.305	3.2239	1				7144	883	4794	4831	9847	9847					-0.008256594140220841
HYSPIYLSF	9	Unmodified	_HYSPIYLSF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-5|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7824096679688	2	563.782025	1125.5495	0.43436	0.00024489	-0.16916	-9.5367E-05	0.26521	0.00014952	563.7819800521105	68.281	1.0399	68.345	68.129	69.169	0.063507					91	38	4	0	0	0	0.0045547	2	15724	15724;15769		88.904	45.045	1	1659200			7145	883	4794	4831	9848;9849	9848					-0.008256594140220841
HYSPLHLRR	9	Unmodified	_HYSPLHLRR_					0	0	0			REV__ENST00000506163.5_1_5:70238213-70238261:+|nuORF	REV__ENST00000506163.5_1_5:70238213-70238261:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.830078125	2	589.830706	1177.64686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.44	1	36.44	35.94	36.94	0								0	0	0	0.2927	1	6220	6220		0.52476	0.066424	1		+		7146	12226	4795	4832	9850	9850					0.06514167305522278
HYTGTPDI	8	Unmodified	_HYTGTPDI_					0	0	0			REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF;REV__ENSG00000196230|ENST00000327892|TUBB	REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.21270751953125	2	452.213975	902.413397	-0.079668	-3.6027E-05	-1.0741	-0.00048572	-1.1538	-0.00052175	452.21323568973816	44.481	0.64117	44.568	44.419	45.061	0.08754					33	23	2	0	0	0	0.53858	1	8520	8520		2.3027	0.24298	1	45252	+		7147	12637;8514	4796	4833	9851	9851					-0.04171353924664345
HYTGTPDI	8	Unmodified	_HYTGTPDI_					0	0	0			REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF;REV__ENSG00000196230|ENST00000327892|TUBB	REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	452.213975	902.413397	-0.055446	-2.5074E-05	-1.7975	-0.00081285	-1.8529	-0.00083792	452.213012599721	44.621	0.52358	44.621	44.444	44.968	0	0.026593	-0.00028579	NaN	2.3027	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56016	+		7148	12637;8514	4796	4833							-0.04171353924664345
HYTGTPDI	8	Unmodified	_HYTGTPDI_					0	0	0			REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF;REV__ENSG00000196230|ENST00000327892|TUBB	REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	452.213975	902.413397	-0.079668	-3.6027E-05	-1.0741	-0.00048572	-1.1538	-0.00052175	452.21323568973816	44.481	0.64117	44.568	44.419	45.061	0.08754	-0.026593	0.00036845	NaN	2.3027	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45252	+		7149	12637;8514	4796	4833							-0.04171353924664345
HYTIVFNTF	9	Unmodified	_HYTIVFNTF_					0	0	0		nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-5|ATP2B4	nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3235473632812	2	571.287474	1140.5604	0.65801	0.00037591	-0.1497	-8.552E-05	0.50831	0.00029039	571.2873234641867	66.783	1.1629	66.783	66.506	67.669	0					87	44	3	0	0	0	0.23478	1	15569	15569		12.241	6.5088	1	430020			7150	629	4797	4834	9852	9852					-0.004262570397258969
HYTIVFNTF	9	Unmodified	_HYTIVFNTF_					0	0	0		nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-5|ATP2B4	nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.3241577148438	2	571.287474	1140.5604	0.66393	0.0003793	-0.5561	-0.00031769	0.10783	6.1604E-05	571.2872289140067	66.759	1.118	66.824	66.579	67.697	0.065071					80	40	3	0	0	0	0.2229	1	15467	15467		19.257	5.3509	1	513600			7151	629	4797	4834	9853	9853					-0.004262570397258969
HYTLVAFAW	9	Unmodified	_HYTLVAFAW_					0	0	0		ENSG00000145495|ENST00000274140|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF	ENSG00000145495|ENST00000274140|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2843017578125	2	554.284734	1106.55492	0.55328	0.00030667	-0.18443	-0.00010223	0.36885	0.00020445	554.2844233928188	75.481	0.36061	75.481	75.251	75.611	0					27	13	3	0	0	0	0.17491	1	18071	18071		28.487	9.2299	1	239070			7152	3250	4798	4835	9854	9854					0.005900641684547736
HYTLVAFAW	9	Unmodified	_HYTLVAFAW_					0	0	0		ENSG00000145495|ENST00000274140|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF	ENSG00000145495|ENST00000274140|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2847290039062	2	554.284734	1106.55492	0.58914	0.00032655	-0.043959	-2.4366E-05	0.54518	0.00030219	554.284452259535	75.517	0.35339	75.561	75.266	75.619	0.044037					23	12	2	0	0	0	0.17491	1	17892	17892		28.487	11.374	1	237430			7153	3250	4798	4835	9855	9855					0.005900641684547736
HYVEKPSTF	9	Unmodified	_HYVEKPSTF_					0	0	0		nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENST00000481170.1_1_2:220366576-220368936:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA	nc|ENSG00000144591|Q96IJ6-2|GMPPA	nc|ENSG00000144591|Q96IJ6-2|GMPPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2775268554688	2	554.277106	1106.53966	0.025223	1.3981E-05	-0.62403	-0.00034589	-0.59881	-0.00033191	554.2774272829663	31.107	0.47775	31.107	30.909	31.387	0					66	22	4	0	0	0	0.18398	2	4629	4602;4629		20.415	11.067	1	67704			7154	7521	4799	4836	9856;9857	9857					-0.009348474193984657
HYVEKPSTF	9	Unmodified	_HYVEKPSTF_					0	0	0		nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENST00000481170.1_1_2:220366576-220368936:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA	nc|ENSG00000144591|Q96IJ6-2|GMPPA	nc|ENSG00000144591|Q96IJ6-2|GMPPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.277099609375	2	554.277106	1106.53966	0.1461	8.0982E-05	-0.63677	-0.00035295	-0.49067	-0.00027197	554.2771912464761	31.094	0.52905	31.168	30.964	31.493	0.07378					73	26	4	0	0	0	0.2125	1	4493	4493		17.113	7.7655	1	96756			7155	7521	4799	4836	9858	9858					-0.009348474193984657
IAAEGPTITL	10	Unmodified	_IAAEGPTITL_					0	0	0			REV__tr|U7T223|U7T223_FUSNUEthanolamineutilizationproteinEutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00815PE=4SV=1	REV__tr|U7T223|U7T223_FUSNUEthanolamineutilizationproteinEutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00815PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.28192138671875	2	493.281857	984.549162	0.59836	0.00029516	-0.25772	-0.00012713	0.34064	0.00016803	493.2816349657856	71.015	0.42595	71.074	70.892	71.318	0.058578					34	15	3	0	0	0	0.41688	1	16595	16595		10.074	0	1	392340	+		7156	13261	4800	4837	9859	9859					0.05626920866131968
IAAGEVIQR	9	Unmodified	_IAAGEVIQR_					0	0	0		ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.78033447265625	2	478.779816	955.545079	-0.14489	-6.937E-05	0.77587	0.00037147	0.63098	0.0003021	478.7800637262781	35.54	0.40228	35.54	35.334	35.736	0					23	13	2	0	0	0	0.081383	1	5930	5930		36.506	11.515	1	65071			7157	838	4801	4838	9860	9860					0.06552876163073051
IAAGEVIQR	9	Unmodified	_IAAGEVIQR_					0	0	0		ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7797546386719	2	478.779816	955.545079	-0.12702	-6.0813E-05	0.5415	0.00025926	0.41448	0.00019845	478.7798120400964	35.444	0.34277	35.522	35.339	35.682	0.078831					22	12	2	0	0	0	0.22083	1	5778	5778		16.149	2.2431	1	53886			7158	838	4801	4838	9861	9861					0.06552876163073051
IAAVYEHA	8	Unmodified	_IAAVYEHA_					0	0	0		ENST00000448644.2_1_6:133055390-133055831:-|nuORF;nc|ENSG00000112303|O95498-5|VNN2;nc|ENSG00000112303|O95498-3|VNN2;nc|ENSG00000112303|O95498-4|VNN2;ENST00000526192.1_1_6:133074642-133078971:-|nuORF;nc|ENSG00000112303|O95498-2|VNN2;ENSG00000112303|ENST00000326499|VNN2	ENST00000448644.2_1_6:133055390-133055831:-|nuORF	ENST00000448644.2_1_6:133055390-133055831:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.227294921875	2	437.226885	872.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.587	1	46.587	46.087	47.087	0								0	0	0	0.25711	1	9284	9284		46.921	2.5139	1				7159	6557	4802	4839	9862	9862					-0.0021045968238695423
IAAVYEHA	8	Unmodified	_IAAVYEHA_					0	0	0		ENST00000448644.2_1_6:133055390-133055831:-|nuORF;nc|ENSG00000112303|O95498-5|VNN2;nc|ENSG00000112303|O95498-3|VNN2;nc|ENSG00000112303|O95498-4|VNN2;ENST00000526192.1_1_6:133074642-133078971:-|nuORF;nc|ENSG00000112303|O95498-2|VNN2;ENSG00000112303|ENST00000326499|VNN2	ENST00000448644.2_1_6:133055390-133055831:-|nuORF	ENST00000448644.2_1_6:133055390-133055831:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2274475097656	2	437.226885	872.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.455	1	46.541	46.041	47.041	0.085617								0	0	0	0.25711	1	9115	9115		46.921	2.5139	1				7160	6557	4802	4839	9863	9863					-0.0021045968238695423
IACPPEEFTV	10	Unmodified	_IACPPEEFTV_					0	0	0			REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF	REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.263916015625	2	553.26535	1104.51615	0.38306	0.00021193	0.016637	9.2048E-06	0.39969	0.00022114	553.2637014623366	87.186	0.61668	87.213	87.067	87.684	0.027573					44	24	3	0	0	0	0.24016	1	21499	21499		29.082	6.3453	1	211220	+		7161	12214	4803	4840	9864	9864					-0.03193029248222956
IADEEQKAL	9	Unmodified	_IADEEQKAL_					0	0	0		ENST00000532066.1_1_11:35745832-35827932:+|nuORF;ENSG00000166326|ENST00000299413|TRIM44	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7663879394531	2	508.766571	1015.51859	-0.14867	-7.564E-05	0.016521	8.4052E-06	-0.13215	-6.7235E-05	508.76647717260823	32.278	0.53247	32.278	32.082	32.614	0					62	22	4	0	0	0	0.016057	1	4972	4972		61.09	28.304	1	294200			7162	4151	4804	4841	9865	9865					0.011451424810957178
IADEEQKAL	9	Unmodified	_IADEEQKAL_					0	0	0		ENST00000532066.1_1_11:35745832-35827932:+|nuORF;ENSG00000166326|ENST00000299413|TRIM44	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7664489746094	2	508.766571	1015.51859	-0.086081	-4.3795E-05	-0.027065	-1.377E-05	-0.11315	-5.7565E-05	508.7664983856801	32.238	0.49384	32.312	32.127	32.621	0.07378					77	25	4	0	0	0	0.013066	1	4839	4839		63.227	21.388	1	241100			7163	4151	4804	4841	9866	9866					0.011451424810957178
IADLERETF	9	Unmodified	_IADLERETF_					0	0	0		nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2796020507812	2	547.279846	1092.54514	0.23115	0.0001265	-0.36385	-0.00019913	-0.1327	-7.2624E-05	547.2795649174251	50.211	0.43556	50.211	50.024	50.46	0					36	15	3	0	0	0	0.24273	1	10406	10406		13.615	6.5131	1	191340			7164	4043	4805	4842	9867	9867					0.002568313724168547
IADLERETF	9	Unmodified	_IADLERETF_					0	0	0		nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7572021484375	2	547.279846	1092.54514	0.31851	0.00017431	-0.1957	-0.0001071	0.12281	6.7214E-05	547.2796197542644	50.105	0.74123	50.179	49.979	50.72	0.07312					53	25	4	0	0	0	0.18151	1	10212	10212		29.841	14.592	1	171050			7165	4043	4805	4842	9868	9868					0.002568313724168547
IADPNIAKL	9	Unmodified	_IADPNIAKL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7844543457031	2	477.784567	953.554582	-0.029063	-1.3886E-05	0.076086	3.6353E-05	0.047022	2.2467E-05	477.7845699140605	48.377	0.4904	48.377	48.192	48.683	0					34	16	3	0	0	0	0.095436	1	9834	9834		33.445	5.8161	1	261670			7166	1591	4806	4843	9869	9869					0.07594644448602139
IADPNIAKL	9	Unmodified	_IADPNIAKL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7845458984375	2	477.784567	953.554582	0.067788	3.2388E-05	-0.11562	-5.5241E-05	-0.047832	-2.2853E-05	477.7845262628573	48.299	0.67892	48.379	48.134	48.813	0.080029					42	22	3	0	0	0	0.095436	1	9667	9667		33.445	5.8161	1	244930			7167	1591	4806	4843	9870	9870					0.07594644448602139
IADTNFDVL	9	Unmodified	_IADTNFDVL_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2563781738281	2	504.25584	1006.49713	0.33449	0.00016867	-0.26632	-0.00013429	0.068179	3.438E-05	504.25552394065676	71.284	0.49342	71.284	71.037	71.53	0					37	16	3	0	0	0	0.17428	1	16776	16776		21.537	0.66577	1	263530			7168	2267	4807	4844	9871	9871					-0.005862425476038879
IADVKPNEM	9	Unmodified	_IADVKPNEM_					0	0	0			REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2798767089844	2	508.757692	1015.50083	0.054277	2.7614E-05	-0.071796	-3.6527E-05	-0.017518	-8.9126E-06	508.7575970189819	35.224	0.41702	35.224	35.062	35.479	0					31	14	3	0	0	0	0.25787	1	5854	5854		2.9952	1.151	1	52349	+		7169	13156	4808	4845	9872	9872					-0.00629896045404621
IADWPVVVL	9	Unmodified	_IADWPVVVL_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7526550292969	2	506.29731	1010.58007	0.40862	0.00020688	-0.63364	-0.00032081	-0.22502	-0.00011393	506.29659244514284	92.01	0.50765	92.01	91.735	92.243	0					29	18	2	0	0	0	0.2298	1	23110	23110		16.942	4.4107	1	94472			7170	3554	4809	4846	9873	9873					0.07520118971035572
IADWPVVVL	9	Unmodified	_IADWPVVVL_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.31536865234375	2	506.29731	1010.58007	0.32294	0.0001635	-0.50779	-0.00025709	-0.18486	-9.3593E-05	506.29689896764324	91.896	0.51186	91.932	91.774	92.286	0.036522					22	17	2	0	0	0	0.23598	1	22939	22939		15.847	7.937	1	76106			7171	3554	4809	4846	9874	9874					0.07520118971035572
IAFEYKISSF	10	Unmodified	_IAFEYKISSF_					0	0	0			REV__ZNF462|p.D64Y|1|0.08|ENSG00000148143|chr9:106923573-106923573|G/T|missense_variant	REV__ZNF462|p.D64Y|1|0.08|ENSG00000148143|chr9:106923573-106923573|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8150634765625	2	602.816064	1203.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.186	1	95.224	94.724	95.724	0.038872								0	0	0	0.33528	1	23923	23923		5.7319	0	1		+		7172	13342	4810	4847	9875	9875					0.023911654459880083
IAFPIAFLGVA	11	Unmodified	_IAFPIAFLGVA_					0	0	0			REV__ENSG00000170425|ENST00000304222|ADORA2B	REV__ENSG00000170425|ENST00000304222|ADORA2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8348388671875	2	559.83406	1117.65357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.21	1	104.21	103.71	104.71	0								0	0	0	0.33792	1	26809	26809		1.4819	0	1		+		7173	10214	4811	4848	9876	9876					0.09944667413515162
IAGAQGLRVF	10	Unmodified	_IAGAQGLRVF_					0	0	0		ENST00000597648.5_1_19:17970943-17971054:+|nuORF	ENST00000597648.5_1_19:17970943-17971054:+|nuORF	ENST00000597648.5_1_19:17970943-17971054:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3143920898438	2	516.303458	1030.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.758	1	93.758	93.258	94.258	0								0	0	0	0.33156	1	23647	23647		10.074	0.6908	1				7174	7288	4812	4849	9877	9877					0.07829155434069435
IAGPYDEEEL	10	Unmodified	_IAGPYDEEEL_					0	0	0			REV__nc|ENSG00000004766|Q96JG6-2|VPS50	REV__nc|ENSG00000004766|Q96JG6-2|VPS50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2612915039062	2	568.261319	1134.50808	0.11998	6.8178E-05	0.24318	0.00013819	0.36315	0.00020637	568.2617027691676	51.136	1.8092	51.136	50.234	52.043	0					160	62	4	0	0	0	0.41688	1	10530	10530		10.074	2.7847	1	537700	+		7175	7928	4813	4850	9878	9878					-0.053788849639886394
IAKDPRYEKRW	11	Unmodified	_IAKDPRYEKRW_					0	0	0		nc|ENSG00000172554|Q9NY99-2|SNTG2;ENSG00000172554|ENST00000308624|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.28497314453125	3	487.936887	1460.78883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.615	1	63.686	63.186	64.186	0.071018								0	0	0	0.33799	1	14320	14320		1.4551	0.24029	1				7176	4502	4814	4851	9879	9879					0.07686915537146888
IAKQYQDAI	9	Unmodified	_IAKQYQDAI_					0	0	0		ENST00000491136.6_1_1:52823963-52826194:-|nuORF;ENST00000460261.5_1_1:52822810-52825784:-|nuORF;nc|ENSG00000154222|Q5T0F9-3|CC2D1B;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B	ENST00000491136.6_1_1:52823963-52826194:-|nuORF	ENST00000491136.6_1_1:52823963-52826194:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2848510742188	2	525.284931	1048.55531	0.16175	8.4967E-05	0.036913	1.939E-05	0.19867	0.00010436	525.2848831061536	50.217	0.63305	50.217	49.906	50.539	0					63	22	4	0	0	0	0.083504	1	10364	10364		36.044	0	1	695660			7177	3549	4815	4852	9880	9880					0.032974390976505674
IALSSRVGF	9	Unmodified	_IALSSRVGF_					0	0	0			REV__ENSG00000197937|ENST00000334197|ZNF347	REV__ENSG00000197937|ENST00000334197|ZNF347	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2710876464844	2	475.276909	948.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.423	1	56.423	55.923	56.923	0								0	0	0	0.21527	1	12272	12272		15.847	2.3393	1		+		7178	10877	4816	4853	9881	9881					0.06293777651433174
IALTSGEWEVL	11	Unmodified	_IALTSGEWEVL_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;ENST00000597253.5_1_19:4688763-4694742:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.7681274414062	2	609.324254	1216.63395	0.4914	0.00029942	-0.78327	-0.00047727	-0.29187	-0.00017784	609.3237085746495	82.539	0.47598	82.56	82.319	82.795	0.021744					22	16	2	0	0	0	0.30991	1	20060	20060		10.8	0	1	108350			7179	3085	4817	4854	9882	9882					0.034302466121062025
IALTSGEWEVL	11	Unmodified	_IALTSGEWEVL_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;ENST00000597253.5_1_19:4688763-4694742:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	609.324254	1216.63395	0.58872	0.00035872	0.36393	0.00022175	0.95265	0.00058047	609.3240683337734	82.511	0.48405	82.511	82.364	82.848	0	-0.024529	0.00054011	NaN	10.8	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105890			7180	3085	4817	4854							0.034302466121062025
IANLEPVSL	9	Unmodified	_IANLEPVSL_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.276611328125	2	478.276575	954.538597	0.21667	0.00010363	-0.10705	-5.1197E-05	0.10962	5.2431E-05	478.2764511469281	68.983	0.88574	68.983	68.558	69.443	0					83	32	4	0	0	0	0.03472	1	16121	16121		47.749	9.5731	1	1296200			7181	2486	4818	4855	9883	9883					0.0595093821170849
IANLEPVSL	9	Unmodified	_IANLEPVSL_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2765808105469	2	478.276575	954.538597	-0.019298	-9.2298E-06	0.11257	5.3839E-05	0.093271	4.4609E-05	478.2765658565647	68.86	0.91835	68.922	68.531	69.449	0.062126					95	34	4	0	0	0	0.0093779	2	15924	15924;15968		69.105	26.268	1	1361500			7182	2486	4818	4855	9884;9885	9884					0.0595093821170849
IANLEPVSL	9	Unmodified	_IANLEPVSL_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	478.276575	954.538597	0.21667	0.00010363	-0.10705	-5.1197E-05	0.10962	5.2431E-05	478.2764511469281	68.983	0.88574	68.983	68.558	69.443	0	0.030598	-0.00011159	NaN	69.105	83	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1296200			7183	2486	4818	4855							0.0595093821170849
IANQDPIAV	9	Unmodified	_IANQDPIAV_					0	0	0		nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7586364746094	2	470.758549	939.502546	0.014631	6.8874E-06	0.14761	6.9491E-05	0.16224	7.6378E-05	470.7585207356344	52.514	0.56688	52.514	52.246	52.813	0					49	19	3	0	0	0	0.20358	1	11107	11107		18.146	4.2403	1	528020			7184	3649	4819	4856	9886	9886					0.030374810348462233
IANQDPIAV	9	Unmodified	_IANQDPIAV_					0	0	0		nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7584533691406	2	470.758549	939.502546	0.035184	1.6563E-05	0.034533	1.6257E-05	0.069718	3.282E-05	470.7585111305178	52.458	0.5356	52.525	52.318	52.853	0.067173					49	21	3	0	0	0	0.098463	2	10915	10915;10964		32.786	10.049	1	458540			7185	3649	4819	4856	9887;9888	9887					0.030374810348462233
IANYFFFYL	9	Unmodified	_IANYFFFYL_					0	0	0			REV__ENSG00000164933|ENST00000297578|SLC25A32	REV__ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7357788085938	2	599.302593	1196.59063	0.4609	0.00027622	1.5238	0.00091319	1.9847	0.0011894	599.8043852178806	91.66	0.13364	91.66	91.602	91.735	0					6	4	2	0	0	0	0.25504	1	23009	23009		4.756	0	1	104050	+		7186	10012	4820	4857	9889	9889					0.00020101625477764173
IAPCWMCQ	8	Unmodified	_IAPCWMCQ_					0	0	0		ENST00000475185.5_1_18:20877812-20889646:-|nuORF	ENST00000475185.5_1_18:20877812-20889646:-|nuORF	ENST00000475185.5_1_18:20877812-20889646:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1979675292969	2	476.197902	950.38125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.033	1	17.111	16.611	17.611	0.077806								0	0	0	0.38822	1	772	772		0.69038	0	1				7187	6708	4821	4858	9890	9890					-0.09592504195325091
IAQPKRGANV	10	Unmodified	_IAQPKRGANV_					0	0	0			REV__ENST00000505447.5_1_4:7765494-7780765:-|nuORF	REV__ENST00000505447.5_1_4:7765494-7780765:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.3117065429688	2	527.311815	1052.60908	0.045086	2.3774E-05	-0.048828	-2.5748E-05	-0.0037425	-1.9734E-06	527.311733995812	34.816	0.58826	34.892	34.688	35.276	0.076244					41	24	3	0	0	0	0.43972	1	5608	5608		6.7232	0.51738	1	91001	+		7188	10820	4822	4859	9891	9891					0.08487656320039605
IASFYWTLT	9	Unmodified	_IASFYWTLT_					0	0	0		ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2843017578125	2	551.2844	1100.55425	0.25372	0.00013987	-0.52887	-0.00029156	-0.27514	-0.00015168	551.2840737175812	38.855	2.507	38.855	38.207	40.714	0					179	90	3	0	0	0	0.26684	1	7106	7106		10.824	1.4408	1	255560			7189	1454	4823	4860	9892	9892					0.007992247287575083
IASFYWTLT	9	Unmodified	_IASFYWTLT_					0	0	0		ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.284423828125	2	551.2844	1100.55425	0.40541	0.0002235	-0.48157	-0.00026548	-0.076161	-4.1987E-05	551.2840748903407	38.737	2.3582	38.824	38.017	40.375	0.08688					155	91	3	0	0	0	0.33704	1	7087	7087		1.8442	0.19162	1	209020			7190	1454	4823	4860	9893	9893					0.007992247287575083
IASLDSPQL	9	Unmodified	_IASLDSPQL_					0	0	0		nc|ENSG00000092295|P22735-2|TGM1;ENSG00000092295|ENST00000206765|TGM1	nc|ENSG00000092295|P22735-2|TGM1	nc|ENSG00000092295|P22735-2|TGM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2580871582031	2	472.258382	942.502212	0.10343	4.8844E-05	0.021325	1.0071E-05	0.12475	5.8914E-05	472.25821857275855	59.702	0.45895	59.702	59.558	60.017	0					28	17	2	0	0	0	0.0046221	1	13266	13266		86.332	28.61	1	209830			7191	1076	4824	4861	9894	9894					0.028660613150123027
IASLDSPQL	9	Unmodified	_IASLDSPQL_					0	0	0		nc|ENSG00000092295|P22735-2|TGM1;ENSG00000092295|ENST00000206765|TGM1	nc|ENSG00000092295|P22735-2|TGM1	nc|ENSG00000092295|P22735-2|TGM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.258544921875	2	472.258382	942.502212	-0.09179	-4.3349E-05	0.43076	0.00020343	0.33897	0.00016008	472.2585066348846	59.715	0.95103	59.787	59.599	60.55	0.072338					43	35	2	0	0	0	0.03918	1	13112	13112		45.7	5.7423	1	178810			7192	1076	4824	4861	9895	9895					0.028660613150123027
IASTAYLELF	10	Unmodified	_IASTAYLELF_					0	0	0		nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-3|FHIP1B	nc|ENSG00000051009|Q8N612-3|FHIP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.3032836914062	2	564.30279	1126.59103	0.38548	0.00021753	-0.08159	-4.6042E-05	0.30389	0.00017149	564.3027317218117	91.392	1.3501	91.392	91.001	92.351	0					114	49	4	0	0	0	0.11192	1	23026	23026		43.858	0	1	621590			7193	585	4825	4862	9896	9896					0.03279476554644134
IASTAYLELF	10	Unmodified	_IASTAYLELF_					0	0	0		nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-3|FHIP1B	nc|ENSG00000051009|Q8N612-3|FHIP1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8294067382812	2	564.30279	1126.59103	0.21741	0.00012269	0.12513	7.0612E-05	0.34254	0.0001933	564.3028679041254	91.261	1.356	91.296	91.045	92.401	0.035446					98	47	4	0	0	0	0.25999	1	22909	22909		36.127	0	1	622810			7194	585	4825	4862	9897	9897					0.03279476554644134
IATTEALSM	9	Oxidation (M)	_IATTEALSM(Oxidation (M))_		IATTEALSM(1)		IATTEALSM(55)	0	0	1		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000183486|ENST00000330714|MX2;ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7358093261719	2	476.736425	951.458298	-0.65323	-0.00031142	-0.17212	-8.2058E-05	-0.82535	-0.00039348	476.73626507931533	42.527	0.37471	42.527	42.333	42.708	0					26	12	3	0	0	0	0.024893	1	8054	8054		54.774	12.679	1	73983			7195	3660;4923	4826	4863	9898	9898		227			-0.01937291173635458
IATTGVRVS	9	Unmodified	_IATTGVRVS_					0	0	0		PIAS4|p.E314K|1|0.22|ENSG00000105229|chr19:4033132-4033132|G/A|missense_variant;ENSG00000105229|ENST00000262971|PIAS4	PIAS4|p.E314K|1|0.22|ENSG00000105229|chr19:4033132-4033132|G/A|missense_variant	PIAS4|p.E314K|1|0.22|ENSG00000105229|chr19:4033132-4033132|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2673645019531	2	452.266542	902.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.012	1	94.012	93.512	94.512	0								0	0	0	0.26517	1	23724	23724		6.2058	0.97511	1				7196	1455	4827	4864	9899	9899					0.06337187271753919
IAVSATRGSAL	11	Unmodified	_IAVSATRGSAL_					0	0	0		ENST00000480321.1_1_13:113699393-113699726:+|nuORF	ENST00000480321.1_1_13:113699393-113699726:+|nuORF	ENST00000480321.1_1_13:113699393-113699726:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3031616210938	2	523.303655	1044.59276	0.50452	0.00026402	-0.077575	-4.0595E-05	0.42695	0.00022342	523.3035016016728	82.868	2.4206	82.868	81.98	84.401	0					302	93	5	0	0	0	0.39744	1	20790	20790		4.897	4.897	1	3364900			7197	6742	4828	4865	9900	9900					0.07224530363282611
IAVTTIDNI	9	Unmodified	_IAVTTIDNI_					0	0	0		ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000526368.1_1_11:62530297-62533976:+|nuORF	ENST00000526368.1_1_11:62530297-62533976:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2737121582031	2	480.274032	958.533512	0.14606	7.0149E-05	-0.15442	-7.4164E-05	-0.0083593	-4.0147E-06	480.2738261044733	47.651	0.62101	47.651	47.231	47.852	0					42	20	3	0	0	0	0.30397	1	9526	9526		6.2058	0	1	91411			7198	4251	4829	4866	9901	9901					0.05258634349092972
IAYPLKLTF	9	Unmodified	_IAYPLKLTF_					0	0	0			REV__ENSG00000132669|ENST00000255006|RIN2	REV__ENSG00000132669|ENST00000255006|RIN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.765380859375	2	533.320786	1064.62702	0.52227	0.00027854	-0.20143	-0.00010743	0.32084	0.00017111	533.3205281339482	63.348	0.72055	63.348	63.073	63.793	0					48	25	3	0	0	0	0.2491	1	14481	14481		8.5933	1.304	1	224670	+		7199	9124	4830	4867	9902	9902					0.09728978522139187
ICDALLISQN	10	Unmodified	_ICDALLISQN_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5;SLFN5|p.Y803Ifs*2|1|0.2|ENSG00000166750|chr17:35265613-35265614|-/A|frameshift_variant	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2849731445312	2	545.284074	1088.5536	0.83087	0.00045306	1.4886	0.00081173	2.3195	0.0012648	545.2846211962022	80.798	0.77604	80.798	80.571	81.347	0					52	26	3	0	0	0	0.06541	1	19729	19729		53.404	11.448	1	370340			7200	4178	4831	4868	9903	9903					0.012860620174024007
ICDKCGQG	8	Unmodified	_ICDKCGQG_					0	0	0		nc|ENSG00000143033|Q9Y483-3|MTF2;nc|ENSG00000143033|Q9Y483-4|MTF2;ENSG00000143033|ENST00000370298|MTF2;ENST00000471953.5_1_1:93545083-93592837:+|nuORF	nc|ENSG00000143033|Q9Y483-3|MTF2	nc|ENSG00000143033|Q9Y483-3|MTF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	412.17572021484375	2	412.175481	822.336409	0.097918	4.0359E-05	-0.26125	-0.00010768	-0.16334	-6.7323E-05	412.1757128826149	87.729	2.2357	87.759	87.582	89.818	0.030037					201	86	5	0	0	0	0.53894	1	21629	21629		2.0598	1.3694	1	10390000			7201	3129	4832	4869	9904	9904					-0.0818661173699411
ICFMLDLET	9	Unmodified	_ICFMLDLET_					0	0	0			REV__ENST00000590248.1_1_18:56040426-56056538:+|nuORF	REV__ENST00000590248.1_1_18:56040426-56056538:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2637939453125	2	542.756304	1083.49805	0.41894	0.00022738	1.9965	0.0010836	2.4154	0.001311	542.7574504018457	38.248	0.61032	38.335	37.904	38.514	0.08688					29	22	2	0	0	0	0.25875	1	6628	6628		1.8442	0.51471	1	31549	+		7202	8048	4833	4870	9905	9905					-0.040354874945478514
ICKEKAAA	8	Unmodified	_ICKEKAAA_					0	0	0			REV__ENST00000505030.5_1_5:87962375-87962516:-|nuORF	REV__ENST00000505030.5_1_5:87962375-87962516:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.2394714355469	2	417.231113	832.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.505	1	83.527	83.027	84.027	0.021744								0	0	0	0.38822	1	20369	20369		5.2307	0.47466	1		+		7203	12219	4834	4871	9906	9906					0.02474770962578532
ICLWHVPR	8	Unmodified	_ICLWHVPR_					0	0	0		ENST00000486062.1_1_19:22882216-22882330:+|nuORF	ENST00000486062.1_1_19:22882216-22882330:+|nuORF	ENST00000486062.1_1_19:22882216-22882330:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2821044921875	2	512.281472	1022.54839	0.59451	0.00030456	0.15729	8.0576E-05	0.7518	0.00038513	512.2816151420703	80.889	2.1808	80.912	80.219	82.4	0.023613					122	78	3	0	0	0	0.53771	1	19751	19751		2.8892	0	1	446890			7204	6782	4835	4872	9907	9907					0.038018477361106306
ICPCPHLAL	9	Unmodified	_ICPCPHLAL_					0	0	0			REV__tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	REV__tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7475891113281	2	483.748616	965.482679	-0.16138	-7.8066E-05	-0.71694	-0.00034682	-0.87832	-0.00042489	483.7481756535089	49.079	0.79087	49.155	48.93	49.721	0.076607					68	28	4	0	0	0	0.23437	2	9870	9870;9986		14.582	2.9414	1	617190	+		7205	13041	4836	4873	9908;9909	9908					-0.0014430950112682694
ICRRAVLA	8	Unmodified	_ICRRAVLA_					0	0	0		ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.80499267578125	2	451.273647	900.532741	0.071275	3.2165E-05	1.102	0.0004973	1.1733	0.00052946	451.2738983606749	112.44	0.70601	112.44	112.26	112.97	0					116	76	3	0	0	0	0.3576	1	28814	28814		2.8892	0	1	951990			7206	2522	4837	4874	9910	9910					0.07849561219063617
IDAYVVSESKN	11	Unmodified	_IDAYVVSESKN_					0	0	0			REV__nc|ENSG00000197965|O95297-5|MPZL1	REV__nc|ENSG00000197965|O95297-5|MPZL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.2189025878906	3	408.875071	1223.60338	-0.26277	-0.00010744	0.11086	4.5327E-05	-0.15191	-6.2111E-05	409.20903216701134	31.465	0.26568	31.539	31.368	31.634	0.07378					20	12	2	0	0	0	0.3108	1	4589	4589		1.2148	0.10508	1	7735.7	+		7207	10880	4838	4875	9911	9911					0.0005246822704521037
IDDMVLDEF	9	Unmodified	_IDDMVLDEF_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;DNAH17-TMC6|1|fusion	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2898559570312	2	548.74699	1095.47943	0.51612	0.00028322	-0.56593	-0.00031055	-0.04981	-2.7333E-05	548.7464107452695	64.073	0.11619	64.144	64.086	64.202	0.071014					5	3	2	0	0	0	0.2298	1	14456	14456		16.942	0	1	39045			7208	5131	4839	4876	9912	9912					-0.0644932586478717
IDEEPIYEP	9	Unmodified	_IDEEPIYEP_					0	0	0		PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.760986328125	2	552.758412	1103.50227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.17	1	30.245	29.745	30.745	0.075403								0	0	0	0.28631	1	4225	4225		1.8442	0.19162	1				7209	1535	4840	4877	9913	9913					-0.045339834756759956
IDELCIPC	8	Unmodified	_IDELCIPC_					0	0	0			REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF	REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.209716796875	2	453.208989	904.403426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.66	1	96.66	96.16	97.16	0								0	0	0	0.38822	1	24532	24532		0.79363	0	1		+		7210	9953	4841	4878	9914	9914					-0.05260001245915191
IDELCIPC	8	Unmodified	_IDELCIPC_					0	0	0			REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF	REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2096252441406	2	453.208989	904.403426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.617	1	98.617	98.117	99.117	0								0	0	0	0.38822	1	25125	25125		0.79363	0	1		+		7211	9953	4841	4878	9915	9915					-0.05260001245915191
IDELCIPC	8	Unmodified	_IDELCIPC_					0	0	0			REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF	REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.20928955078125	2	453.208989	904.403426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.48	1	102.48	101.98	102.98	0								0	0	0	0.38822	1	26300	26300		0.79363	0	1		+		7212	9953	4841	4878	9916	9916					-0.05260001245915191
IDEYVETVDM	10	Unmodified	_IDEYVETVDM_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2858276367188	2	607.268287	1212.52202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.75	1	55.815	55.315	56.315	0.065128								0	0	0	0.33156	1	11929	11929		10.074	2.7847	1				7213	3592	4842	4879	9917	9917					-0.07573975527202492
IDFDCQCF	8	Unmodified	_IDFDCQCF_					0	0	0			REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.687744140625	2	495.688421	989.362289	0.4121	0.00020427	-2.2096	-0.0010953	-1.7975	-0.00089101	495.68759236221507	83.891	0.55095	83.913	83.641	84.192	0.021744					39	19	3	0	0	0	0.53423	1	20509	20509		5.2307	0.90143	1	255780	+		7214	8726	4843	4880	9918	9918					-0.13281762285384957
IDFDCQCF	8	Unmodified	_IDFDCQCF_					0	0	0			REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.258544921875	2	495.688421	989.362289	0.4121	0.00020427	-2.2096	-0.0010953	-1.7975	-0.00089101	495.68759236221507	83.891	0.55095	83.913	83.641	84.192	0.021744					39	19	3	0	0	0	0.3576	1	20563	20563		5.2307	2.6532	1	255780	+		7215	8726	4843	4880	9919	9919					-0.13281762285384957
IDFDCQCF	8	Unmodified	_IDFDCQCF_					0	0	0			REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	495.688421	989.362289	0.75015	0.00037184	-1.7666	-0.00087567	-1.0164	-0.00050383	495.6873967249885	83.798	0.54644	83.798	83.608	84.154	0	-0.057107	8.1885E-05	NaN	5.2307	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242080	+		7216	8726	4843	4880							-0.13281762285384957
IDFQNFTNIF	10	Unmodified	_IDFQNFTNIF_					0	0	0		tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8089599609375	2	629.808771	1257.60299	0.55664	0.00035058	0.13002	8.1887E-05	0.68666	0.00043247	629.8088846133483	66.738	0.84251	66.738	66.555	67.397	0					45	32	2	0	0	0	0.25648	1	15447	15447		27.223	6.8087	1	338360			7217	13585	4844	4881	9920	9920					-0.015509067021639567
IDFQNFTNIF	10	Unmodified	_IDFQNFTNIF_					0	0	0		tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.80859375	2	629.808771	1257.60299	0.29316	0.00018463	-0.092719	-5.8395E-05	0.20044	0.00012624	629.8085588995335	70.938	1.24	70.938	70.708	71.948	0					131	43	6	0	0	0	0.17573	1	16696	16696		36.506	8.8774	1	2331500			7218	13585	4844	4881	9921	9921					-0.015509067021639567
IDFQNFTNIF	10	Unmodified	_IDFQNFTNIF_					0	0	0		tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.80859375	2	629.808771	1257.60299	0.67013	0.00042206	-0.39477	-0.00024863	0.27537	0.00017343	629.8086563458932	66.675	0.46291	66.74	66.579	67.042	0.065071					37	17	3	0	0	0	0.24525	2	15251	15251;15322		28.495	2.249	1	312340			7219	13585	4844	4881	9922;9923	9922					-0.015509067021639567
IDFQNFTNIF	10	Unmodified	_IDFQNFTNIF_					0	0	0		tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.8087158203125	2	629.808771	1257.60299	0.58527	0.00036861	-0.30821	-0.00019412	0.27706	0.00017449	629.8084236521353	70.855	1.2059	70.913	70.557	71.763	0.058578					112	40	4	0	0	0	0.23357	1	16535	16535		29.841	2.2118	1	1974000			7220	13585	4844	4881	9924	9924					-0.015509067021639567
IDFQNFTNIF	10	Unmodified	_IDFQNFTNIF_					0	0	0		tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	629.808771	1257.60299	0.29316	0.00018463	-0.092719	-5.8395E-05	0.20044	0.00012624	629.8085588995335	70.938	1.24	70.938	70.708	71.948	0	0.012142	0.00013517	NaN	36.506	131	43	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2331500			7221	13585	4844	4881							-0.015509067021639567
IDFQNFTNIF	10	Unmodified	_IDFQNFTNIF_					0	0	0		tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	629.808771	1257.60299	0.58527	0.00036861	-0.30821	-0.00019412	0.27706	0.00017449	629.8084236521353	70.855	1.2059	70.913	70.557	71.763	0.058578	-0.012142	-0.00013628	NaN	36.506	112	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1974000			7222	13585	4844	4881							-0.015509067021639567
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8270874023438	2	562.826766	1123.63898	0.48182	0.00027118	-0.063832	-3.5926E-05	0.41799	0.00023526	562.8265761699781	55.615	0.50845	55.615	55.38	55.889	0					35	17	3	0	0	0	0.19307	1	12004	12004		19.362	4.7802	1	221840	+		7223	8362	4845	4882	9925	9925					0.08210595265359188
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.8275756835938	2	562.826766	1123.63898	0.43678	0.00024583	0.40421	0.0002275	0.841	0.00047333	562.8267967453323	55.541	0.57784	55.606	55.402	55.98	0.065128					37	20	3	0	0	0	0.26705	1	11856	11856		10.8	2.644	1	205180	+		7224	8362	4845	4882	9926	9926					0.08210595265359188
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.826766	1123.63898	0.48182	0.00027118	-0.063832	-3.5926E-05	0.41799	0.00023526	562.8265761699781	55.615	0.50845	55.615	55.38	55.889	0	0.0045026	-0.00022075	NaN	19.362	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221840	+		7225	8362	4845	4882							0.08210595265359188
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	562.826766	1123.63898	0.43678	0.00024583	0.40421	0.0002275	0.841	0.00047333	562.8267967453323	55.541	0.57784	55.606	55.402	55.98	0.065128	-0.0045026	0.00030611	NaN	19.362	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205180	+		7226	8362	4845	4882							0.08210595265359188
IDFSLQSHGS	10	Unmodified	_IDFSLQSHGS_					0	0	0			REV__ENST00000377461.8_1_19:48718626-48735356:-|nuORF	REV__ENST00000377461.8_1_19:48718626-48735356:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7620849609375	2	545.76182	1089.50909	0.2821	0.00015396	-0.033383	-1.8219E-05	0.24872	0.00013574	545.7617269406486	38.9	0.91914	38.987	38.514	39.433	0.08688					74	35	3	0	0	0	0.4101	1	6763	6763		10.8	0	1	74734	+		7227	11650	4846	4883	9927	9927					-0.03208625804427356
IDGHVLKWGF	10	Unmodified	_IDGHVLKWGF_					0	0	0			REV__TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant	REV__TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7908325195312	2	586.316566	1170.61858	0.51912	0.00030437	0.78006	0.00045736	1.2992	0.00076173	586.3163623473462	71.59	0.59109	71.59	71.329	71.92	0					48	20	3	0	0	0	0.31456	1	16980	16980		14.838	1.7958	1	594110	+		7228	8969	4847	4884	9928	9928					0.04009424605555978
IDGIANDIL	9	Unmodified	_IDGIANDIL_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.258056640625	2	472.258382	942.502212	0.37286	0.00017608	-0.39928	-0.00018856	-0.026424	-1.2479E-05	472.2581507730774	67.596	0.55461	67.659	67.438	67.992	0.063507					28	18	2	0	0	0	0.28472	1	15492	15492		8.7454	0	1	174060	+		7229	8498	4848	4885	9929	9929					0.028660613149895653
IDHFEWLIE	9	Unmodified	_IDHFEWLIE_					0	0	0			REV__ENSG00000135226|ENST00000335568|UGT2B28	REV__ENSG00000135226|ENST00000335568|UGT2B28	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7791748046875	2	601.298039	1200.58152	0.33305	0.00020026	-0.69461	-0.00041767	-0.36156	-0.00021741	601.2976746404818	46.662	1.3451	46.662	46.267	47.612	0					86	59	2	0	0	0	0.25979	1	9502	9502		11.64	2.8949	1	325500	+		7230	9197	4849	4886	9930	9930					-0.010742917308789401
IDIIYSLIT	9	Unmodified	_IDIIYSLIT_					0	0	0		ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.8081665039062	2	525.807708	1049.60086	0.50181	0.00026386	-0.21397	-0.00011251	0.28784	0.00015135	525.8075672472637	97.375	0.18069	97.375	97.258	97.438	0					11	6	2	0	0	0	0.24791	1	24751	24751		10.074	0	1	69820			7231	2416	4850	4887	9931	9931					0.07804664560035235
IDIIYSLIT	9	Unmodified	_IDIIYSLIT_					0	0	0		ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.807708	1049.60086	0.45627	0.00023991	-0.44764	-0.00023537	0.0086337	4.5397E-06	525.807368870524	97.428	0.51105	97.469	97.226	97.737	0.040855	0.04699	-9.3703E-05	NaN	10.074	32	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115290			7232	2416	4850	4887							0.07804664560035235
IDKISYYY	8	Unmodified	_IDKISYYY_					0	0	0			REV__LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant;REV__ENSG00000130702|ENST00000252999|LAMA5;REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.269775390625	2	532.768583	1063.52261	0.037477	1.9967E-05	-1.9658	-0.0010473	-1.9283	-0.0010273	532.7669436617228	27.531	0.31088	27.617	27.551	27.862	0.0867					37	22	3	0	0	0	0.53894	1	3447	3447		2.0598	0	1	25863	+		7233	9064;8436;8058	4851	4888	9932	9932					-0.006607680252045611
IDKKKVTT	8	Unmodified	_IDKKKVTT_					0	0	0			REV__ENST00000439124.1_1_6:64325734-64326112:-|nuORF	REV__ENST00000439124.1_1_6:64325734-64326112:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.7920227050781	2	466.792392	931.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.5	1	109.5	109	110	0								0	0	0	0.38822	1	28172	28172		2.0598	0.21551	1		+		7234	11877	4852	4889	9933	9933					0.10170930965671232
IDKSVNYI	8	Unmodified	_IDKSVNYI_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|108	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|108	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|108	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.87762451171875	2	476.260925	950.507297	0.2275	0.00010835	-0.035514	-1.6914E-05	0.19199	9.1436E-05	476.2608361919975	55.543	0.54475	55.543	55.269	55.813	0					43	18	3	0	0	0	0.35759	1	12049	12049		13.042	0	1	388220			7235	177	4853	4890	9934	9934					0.030063651776117695
IDLMENRT	8	Unmodified	_IDLMENRT_					0	0	0			REV__NCS1|p.I116M|1|0.14|ENSG00000107130|chr9:130222690-130222690|C/G|missense_variant	REV__NCS1|p.I116M|1|0.14|ENSG00000107130|chr9:130222690-130222690|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2483825683594	2	496.247492	990.48043	0.71591	0.00035527	0.54419	0.00027005	1.2601	0.00062532	496.2476288940355	92.733	0.40347	92.733	92.552	92.956	0					25	14	3	0	0	0	0.32977	2	23332	23332;23355		32.305	3.8186	1	106540	+		7236	8586	4854	4891	9935;9936	9935					-0.015190667052252138
IDLNFNNSF	9	Unmodified	_IDLNFNNSF_					0	0	0			REV__tr|U7SWL0|U7SWL0_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01081PE=4SV=1	REV__tr|U7SWL0|U7SWL0_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01081PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2594604492188	2	542.258914	1082.50327	0.75122	0.00040736	0.12473	6.7634E-05	0.87595	0.00047499	542.2587779255093	85.334	0.55803	85.358	85.135	85.693	0.023132					56	22	3	0	0	0	0.22083	1	21004	21004		16.149	1.7437	1	758090	+		7237	13216	4855	4892	9937	9937					-0.034677243161013394
IDLRRLNQLHH	11	Unmodified	_IDLRRLNQLHH_					0	0	0			REV__nc|ENSG00000105341|Q9NW81-5|DMAC2	REV__nc|ENSG00000105341|Q9NW81-5|DMAC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7520751953125	3	472.272381	1413.79531	0.34875	0.0001647	2.5879	0.0012222	2.9366	0.0013869	472.273588021804	54.935	0.48392	54.935	54.682	55.166	0					34	17	3	0	0	0	0.31097	1	11745	11745		1.3296	0	1	106200	+		7238	8535	4856	4893	9938	9938					0.10496853488552915
IDMLLSSQVNE	11	Unmodified	_IDMLLSSQVNE_					0	0	0		ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8851623535156	3	416.876194	1247.60675	0.15752	6.5667E-05	1.6199	0.00067529	1.7774	0.00074095	416.8767887645894	62.207	0.61774	62.28	61.917	62.535	0.073418					37	23	2	0	0	0	0.39906	1	13930	13930		2.084	0	1	213640			7239	4869	4857	4894	9939	9939					-0.007146049905941254
IDMPQDNQKL	10	Unmodified	_IDMPQDNQKL_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000198947|P11532-17|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.77978515625	2	601.297713	1200.58087	0.32006	0.00019245	-0.13399	-8.0565E-05	0.18607	0.00011188	601.2976576000207	46.553	0.85862	46.636	46.546	47.405	0.083096					68	43	2	0	0	0	0.42901	1	9324	9324		8.7454	0	1	308610	+		7240	7882;12872	4858	4895	9940	9940					-0.011394544422046238
IDNGLDLIFC	10	Unmodified	_IDNGLDLIFC_					0	0	0			REV__CON__Q3SX14	REV__CON__Q3SX14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7787475585938	2	561.778625	1121.5427	0.45578	0.00025605	0.072395	4.067E-05	0.52817	0.00029672	561.7785523510364	94.004	0.32243	94.042	93.997	94.32	0.038094					32	15	3	0	0	0	0.31667	1	23595	23595		8.7454	2.0222	1	143670	+	+	7241	7847	4859	4896	9941	9941					-0.013213403568897775
IDPLFKRFS	9	Unmodified	_IDPLFKRFS_					0	0	0		ENST00000484977.1_1_7:1197216-1197866:-|nuORF	ENST00000484977.1_1_7:1197216-1197866:-|nuORF	ENST00000484977.1_1_7:1197216-1197866:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8267211914062	2	561.818941	1121.62333	0.32756	0.00018403	4.0783	0.0022913	4.4058	0.0024753	561.8187834843982	47.929	1.811	47.929	47.583	49.394	0					246	62	6	0	0	0	0.15282	1	9720	9720		24.021	5.8742	1	2184600			7242	6777	4860	4897	9942	9942					0.06738308748322197
IDPPPVHESP	10	Unmodified	_IDPPPVHESP_					0	0	0		ENST00000484668.1_1_3:63973932-63976536:+|nuORF;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7	ENST00000484668.1_1_3:63973932-63976536:+|nuORF	ENST00000484668.1_1_3:63973932-63976536:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2747192382812	2	544.274564	1086.53457	-0.18267	-9.9425E-05	0.509	0.00027704	0.32633	0.00017761	544.274838535399	45.028	0.37387	45.028	44.831	45.205	0					22	13	2	0	0	0	0.44496	1	8824	8824		5.7319	0	1	62508			7243	3930	4861	4898	9943	9943					-0.005231512820046191
IDPPPVHESP	10	Unmodified	_IDPPPVHESP_					0	0	0		ENST00000484668.1_1_3:63973932-63976536:+|nuORF;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7	ENST00000484668.1_1_3:63973932-63976536:+|nuORF	ENST00000484668.1_1_3:63973932-63976536:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	544.274564	1086.53457	-0.18267	-9.9425E-05	0.509	0.00027704	0.32633	0.00017761	544.274838535399	45.028	0.37387	45.028	44.831	45.205	0	0.0088798	0.00019483	NaN	5.7319	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62508			7244	3930	4861	4898							-0.005231512820046191
IDPPPVHESP	10	Unmodified	_IDPPPVHESP_					0	0	0		ENST00000484668.1_1_3:63973932-63976536:+|nuORF;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7	ENST00000484668.1_1_3:63973932-63976536:+|nuORF	ENST00000484668.1_1_3:63973932-63976536:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	544.274564	1086.53457	0.069299	3.7718E-05	-0.3049	-0.00016595	-0.2356	-0.00012823	544.2744509290662	44.922	0.43339	45.01	44.804	45.237	0.08754	-0.0088798	-0.00069114	NaN	5.7319	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37551			7245	3930	4861	4898							-0.005231512820046191
IDRKKEEKKLQ	11	Unmodified	_IDRKKEEKKLQ_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.28375244140625	3	472.284064	1413.83036	-0.017029	-8.0423E-06	-0.66122	-0.00031228	-0.67825	-0.00032033	472.28372926122665	95.481	2.0351	95.52	94.766	96.801	0.038864					172	98	3	0	0	0	0.41448	1	23998	23998		1.0136	1.0136	1	610880			7246	3389	4862	4899	9944	9944					0.14000051505831834
IDRLRVLLML	10	Unmodified	_IDRLRVLLML_					0	0	0		nc|ENSG00000125869|Q9UJQ1-2|LAMP5;ENSG00000125869|ENST00000246070|LAMP5	nc|ENSG00000125869|Q9UJQ1-2|LAMP5	nc|ENSG00000125869|Q9UJQ1-2|LAMP5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.2507019042969	3	414.596926	1240.76895	0.63605	0.0002637	1.7758	0.00073625	2.4119	0.00099996	414.5975250680336	99.909	0.31068	99.909	99.845	100.16	0					20	15	2	0	0	0	0.31856	1	25537	25537		0.15932	0	1	69299			7247	2319	4863	4900	9945	9945					0.1581944827287316
IDRVRLRERAN	11	Unmodified	_IDRVRLRERAN_					0	0	0			REV__ENST00000592395.5_1_19:1612394-1615452:-|nuORF	REV__ENST00000592395.5_1_19:1612394-1615452:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.60791015625	3	466.607652	1396.80113	0.32666	0.00015242	0.6333	0.0002955	0.95996	0.00044792	466.6078757902278	92.901	0.71872	92.939	92.671	93.39	0.037369					71	29	3	0	0	0	0.41448	1	23267	23267		1.0136	0.55906	1	276130	+		7248	8158	4864	4901	9946	9946					0.11859952000236262
IDSGMLLLI	9	Oxidation (M)	_IDSGM(Oxidation (M))LLLI_		IDSGM(1)LLLI		IDSGM(60)LLLI	0	0	1			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.78045654296875	2	495.780636	989.546719	0.57975	0.00028743	0.2401	0.00011904	0.81985	0.00040647	495.78028144285963	85.841	1.0938	85.866	85.492	86.586	0.025169					104	41	4	0	0	0	0.017037	1	21101	21101		60.39	9.5345	1	602660	+		7249	9208	4865	4902	9947	9947		339			0.051527491368574374
IDSLEWVR	8	Unmodified	_IDSLEWVR_					0	0	0			REV__ENST00000464478.5_1_1:51924787-51930980:-|nuORF	REV__ENST00000464478.5_1_1:51924787-51930980:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2823791503906	2	509.271824	1016.5291	0.27883	0.000142	-0.91433	-0.00046564	-0.6355	-0.00032364	509.2715427787982	37.948	0.31863	37.948	37.783	38.101	0					12	10	2	0	0	0	0.49441	1	6718	6718		13.508	0	1	14827	+		7250	8268	4866	4903	9948	9948					0.021491699262014663
IDTNGSEEF	9	Unmodified	_IDTNGSEEF_					0	0	0			REV__ENSG00000112972|ENST00000325110|HMGCS1	REV__ENSG00000112972|ENST00000325110|HMGCS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.23370361328125	2	506.216911	1010.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.823	1	58.823	58.323	59.323	0								0	0	0	0.26267	1	12996	12996		6.7232	0.96273	1		+		7251	8730	4867	4904	9949	9949					-0.0855230020365525
IDYWQMIFF	9	Unmodified	_IDYWQMIFF_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5351867675781	3	421.535332	1261.58417	0.37897	0.00015975	-1.1319	-0.00047713	-0.75291	-0.00031738	421.86925769379826	65.886	0.63972	65.953	65.759	66.399	0.066872					36	23	3	0	0	0	0.30005	1	15069	15069		4.1895	0	1	182250			7252	2034	4868	4905	9950	9950					-0.03616159597572732
IEAEHQEHL	9	Unmodified	_IEAEHQEHL_					0	0	0			REV__nc|ENSG00000162004|A2IDD5-2|CCDC78	REV__nc|ENSG00000162004|A2IDD5-2|CCDC78	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.267578125	2	553.26727	1104.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.449	1	28.532	28.032	29.032	0.082134								0	0	0	0.27782	1	3716	3716		3.5965	0	1		+		7253	9873	4869	4906	9951	9951					-0.028092234301539065
IEDEAVIASLL	11	Unmodified	_IEDEAVIASLL_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.82275390625	2	586.824086	1171.63362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.61	1	107.63	107.13	108.13	0.022224								0	0	0	0.32709	1	27568	27568		5.2969	0	1				7254	523	4870	4907	9952	9952					0.05466826892234167
IEDLLPKYNE	10	Unmodified	_IEDLLPKYNE_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|62|2|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|62|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.3221435546875	2	617.321711	1232.62887	-0.34288	-0.00021167	0.72979	0.00045051	0.3869	0.00023884	617.3221533214079	51.458	0.38669	51.458	51.295	51.682	0					30	12	3	0	0	0	0.4101	1	10787	10787		10.8	0	1	228560	+		7255	12709	4871	4908	9953	9953					0.021859427494746342
IEDSDMLQEV	10	Unmodified	_IEDSDMLQEV_					0	0	0		ENST00000396653.2_1_2:224629896-224642420:-|nuORF;nc|ENSG00000152056|Q96PC3|AP1S3	ENST00000396653.2_1_2:224629896-224642420:-|nuORF	ENST00000396653.2_1_2:224629896-224642420:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3432006835938	2	589.765911	1177.51727	0.84519	0.00049846	1.5275	0.00090089	2.3727	0.0013994	590.2690175355162	85.238	0.73595	85.261	85.035	85.771	0.023125					47	29	2	0	0	0	0.31667	1	20938	20938		5.2969	2.0156	1	1000000			7256	6345	4872	4909	9954	9954					-0.06438859669970043
IEDTHQKPKM	10	Unmodified	_IEDTHQKPKM_					0	0	0		ENST00000476189.1_1_6:159209469-159239197:-|nuORF	ENST00000476189.1_1_6:159209469-159239197:-|nuORF	ENST00000476189.1_1_6:159209469-159239197:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.8156127929688	2	613.81353	1225.61251	-0.29452	-0.00018078	-1.7443	-0.0010707	-2.0389	-0.0012515	613.8123850601061	39.532	0.57508	39.532	39.407	39.982	0					33	20	2	0	0	0	0.47199	1	7212	7212		1.4819	0.95714	1	98342			7257	6713	4873	4910	9955	9955					0.008725383117280217
IEELEEWM	8	Unmodified	_IEELEEWM_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.828857421875	2	539.741708	1077.46886	0.42799	0.000231	-3.5186	-0.0018992	-3.0907	-0.0016682	539.7393126405167	50.917	0.36192	50.987	50.792	51.154	0.069874					22	13	3	0	0	0	0.3576	1	10468	10468		8.5933	1.304	1	89956			7258	3294	4874	4911	9956	9956					-0.06677308519192593
IEERESDSR	9	Unmodified	_IEERESDSR_					0	0	0			REV__nc|ENSG00000119950|P50539-4|MXI1	REV__nc|ENSG00000119950|P50539-4|MXI1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.27880859375	2	560.765091	1119.51563	0.39462	0.00022129	0.27737	0.00015554	0.672	0.00037683	560.7647437285902	50.951	0.12629	51.021	50.978	51.105	0.069878					6	4	2	0	0	0	0.24533	1	10475	10475		12.241	3.6474	1	29088	+		7259	8867	4875	4912	9957	9957					-0.03934732643710959
IEFGVDEVI	9	Unmodified	_IEFGVDEVI_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7665100097656	2	510.76604	1019.51753	0.54568	0.00027871	0.093445	4.7729E-05	0.63913	0.00032644	510.76618055655484	84.677	0.33321	84.7	84.617	84.95	0.023132					27	17	2	0	0	0	0.25979	1	20739	20739		11.64	2.2929	1	267640			7260	1355	4876	4913	9958	9958					0.008549281121986496
IEFYWTKK	8	Unmodified	_IEFYWTKK_					0	0	0			REV__ENST00000550389.5_1_12:69864206-69955999:+|nuORF	REV__ENST00000550389.5_1_12:69864206-69955999:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7978515625	2	557.800217	1113.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.058	1	36.058	35.558	36.558	0								0	0	0	0.38822	1	6105	6105		0.69038	0.16561	1		+		7261	12431	4877	4914	9959	9959					0.033632174827062045
IEGFHEQLL	9	Unmodified	_IEGFHEQLL_					0	0	0			REV__POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	REV__POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2865600585938	2	543.284931	1084.55531	0.07145	3.8818E-05	0.25758	0.00013994	0.32903	0.00017876	543.2849557424998	73.305	0.48802	73.305	73.053	73.541	0					29	17	2	0	0	0	0.23216	1	17458	17458		14.838	0	1	338710	+		7262	10696	4878	4915	9960	9960					0.016414390976706272
IEGLSHEVI	9	Unmodified	_IEGLSHEVI_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.77166748046875	2	498.771657	995.528761	0.17911	8.9334E-05	0.1075	5.3616E-05	0.2866	0.00014295	498.7716773799375	48.74	0.77061	48.816	48.567	49.338	0.076607					81	26	5	0	0	0	0.21398	1	9768	9768		16.942	0	1	1064200			7263	4763	4879	4916	9961	9961					0.030817502063428037
IEGSEPPTIW	10	Unmodified	_IEGSEPPTIW_					0	0	0		CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;CSMD3|p.L722Cfs*24|1|0.53|ENSG00000164796|chr8:112685724-112685724|G/-|frameshift_variant	CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.770751953125	2	564.782222	1127.54989	0.010094	5.7007E-06	4.2523	0.0024016	4.2624	0.0024073	564.785716615064	90.354	0.26792	90.389	90.263	90.531	0.034065					24	10	3	0	0	0	0.43972	1	22451	22451		6.7232	0.36906	1	88171			7264	249	4880	4917	9962	9962					-0.008782844847928573
IEGYFDEKF	9	Unmodified	_IEGYFDEKF_					0	0	0			REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2684326171875	2	574.268947	1146.52334	0.45377	0.00026059	-0.12997	-7.464E-05	0.32379	0.00018595	574.2685185519514	63.056	1.7628	63.056	62.722	64.485	0					156	64	4	0	0	0	0.074645	2	14281	14281;14332		37.974	3.5723	1	908210	+		7265	9194	4881	4918	9963;9964	9963					-0.044059733761287134
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7852172851562	2	541.785099	1081.55564	0.20616	0.0001117	-0.017582	-9.5255E-06	0.18858	0.00010217	541.7850705312339	51.885	1.359	51.885	51.562	52.921	0					136	47	5	0	0	0	0.0097093	7	10890	10842;10890;10930;10975;11020;11067;11115		68.081	30.134	1	4666500			7266	1566	4882	4919	9965;9966;9967;9968;9969;9970;9971	9966					0.01812858817538654
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7843017578125	2	541.785099	1081.55564	0.23449	0.00012704	-3.354	-0.0018171	-3.1195	-0.0016901	541.7841928446172	56.521	0.76456	56.521	56.3	57.065	0					55	28	3	0	0	0	0.24767	1	12340	12340		13.042	0	1	304730			7267	1566	4882	4919	9972	9972					0.01812858817538654
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7852783203125	2	541.785099	1081.55564	0.36347	0.00019692	-0.13581	-7.358E-05	0.22766	0.00012334	541.7850106004363	51.809	1.3245	51.876	51.632	52.956	0.067169					131	50	5	0	0	0	0.0064512	5	10737	10693;10737;10780;10826;10988		78.149	36.055	1	4629300			7268	1566	4882	4919	9973;9974;9975;9976;9977	9974					0.01812858817538654
IEHPYGICVL	10	Unmodified	_IEHPYGICVL_					0	0	0			REV__ENSG00000144130|ENST00000688554|NT5DC4	REV__ENSG00000144130|ENST00000688554|NT5DC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.307861328125	2	572.296985	1142.57942	0.25353	0.0001451	-2.8883	-0.001653	-2.6348	-0.0015079	572.2951612769533	78.084	0.22644	78.084	77.899	78.125	0					10	7	2	0	0	0	0.3077	1	18889	18889		21.747	1.293	1	57638	+		7269	9490	4883	4920	9978	9978					0.013829562597038603
IEHPYGICVL	10	Unmodified	_IEHPYGICVL_					0	0	0			REV__ENSG00000144130|ENST00000688554|NT5DC4	REV__ENSG00000144130|ENST00000688554|NT5DC4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	572.296985	1142.57942	0.25353	0.0001451	-2.8883	-0.001653	-2.6348	-0.0015079	572.2951612769533	78.084	0.22644	78.084	77.899	78.125	0	0.0017413	0.00057763	NaN	21.747	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57638	+		7270	9490	4883	4920							0.013829562597038603
IEHPYGICVL	10	Unmodified	_IEHPYGICVL_					0	0	0			REV__ENSG00000144130|ENST00000688554|NT5DC4	REV__ENSG00000144130|ENST00000688554|NT5DC4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.296985	1142.57942	0.44619	0.00025535	-3.5206	-0.0020148	-3.0744	-0.0017595	572.2948472210956	78.048	0.14271	78.08	77.998	78.14	0.032639	-0.0017413	-0.00014606	NaN	21.747	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49777	+		7271	9490	4883	4920							0.013829562597038603
IEHVMQPLL	9	Unmodified	_IEHVMQPLL_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.30029296875	2	540.299527	1078.5845	0.30415	0.00016433	0.66185	0.0003576	0.96599	0.00052193	540.3000066307902	102.57	0.44189	102.57	102.36	102.8	0					63	31	3	0	0	0	0.24021	1	26317	26317		13.906	0	1	133940			7272	2219	4884	4921	9979	9979					0.04835260122308682
IEKAAVKSKK	10	Unmodified	_IEKAAVKSKK_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3616943359375	2	551.353148	1100.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.81	1	111.82	111.32	112.32	0.014595								0	0	0	0.3332	1	28498	28498		8.1555	0	1				7273	7535	4885	4922	9980	9980					0.1454255332816956
IEKAKQDVLYL	11	Unmodified	_IEKAKQDVLYL_					0	0	0			REV__nc|ENSG00000171617|O14682-2|ENC1	REV__nc|ENSG00000171617|O14682-2|ENC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.59100341796875	3	440.590494	1318.74965	0.62297	0.00027447	0.47792	0.00021057	1.1009	0.00048504	440.5906652317778	60.258	1.0652	60.258	60.069	61.135	0					88	38	3	0	0	0	0.39158	1	13577	13577		6.2344	0.83165	1	542890	+		7274	10268	4886	4923	9981	9981					0.10302770462976696
IEKIKNDSKKL	11	Unmodified	_IEKIKNDSKKL_					0	0	0		tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.86297607421875	3	439.269643	1314.7871	0.42944	0.00018864	3.7255	0.0016365	4.1549	0.0018251	439.27125022028883	37.576	0.28708	37.576	37.442	37.729	0					14	9	2	0	0	0	0.31101	1	6585	6585		0.45452	0	1	14835			7275	13670	4887	4924	9982	9982					0.14229861728540527
IEKILFVF	8	Unmodified	_IEKILFVF_					0	0	0		tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.80792236328125	2	504.810054	1007.60555	0.21341	0.00010773	-1.9432	-0.00098097	-1.7298	-0.00087324	504.80898362913433	109.83	0.24951	109.85	109.78	110.03	0.017242					65	35	3	0	0	0	0.53423	1	28105	28105		5.2307	0.90143	1	1298900			7276	13479	4888	4925	9983	9983					0.10205593493481047
IEKILFVF	8	Unmodified	_IEKILFVF_					0	0	0		tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.810054	1007.60555	-0.14418	-7.2782E-05	-1.735	-0.00087585	-1.8792	-0.00094863	504.8092201095983	109.87	0.38123	109.87	109.78	110.16	0	0.013937	3.7014E-05	NaN	5.2307	98	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2546100			7277	13479	4888	4925							0.10205593493481047
IEKKTKGTVF	10	Unmodified	_IEKKTKGTVF_					0	0	0		tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.843017578125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.423	1	87.423	86.923	87.923	0								0	0	0	0.33035	1	21725	21725		11.495	4.393	1				7278	13491	4889	4926	9984	9984					0.10690847091291289
IEKKTKGTVF	10	Unmodified	_IEKKTKGTVF_					0	0	0		tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8429565429688	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.56	1	87.56	87.06	88.06	0								0	0	0	0.32902	1	21767	21767		13.042	1.4022	1				7279	13491	4889	4926	9985	9985					0.10690847091291289
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3170776367188	2	545.316763	1088.61897	0.68775	0.00037504	0.10642	5.8032E-05	0.79417	0.00043308	545.3166235342397	84.597	2.8839	84.597	83.9	86.784	0					354	131	3	0	0	0	0.27929	2	21056	21011;21056		9.3831	0.97858	1	6479300			7280	1219	4890	4927	9986;9987	9987					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3168334960938	2	545.316763	1088.61897	0.53519	0.00029185	0.25857	0.000141	0.79375	0.00043285	545.3167173682548	84.635	2.8459	84.658	83.84	86.686	0.023125					387	132	3	0	0	0	0.27929	1	20635	20635		9.3831	0.63772	1	7199100			7281	1219	4890	4927	9988	9988					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.316763	1088.61897	0.53519	0.00029185	0.25857	0.000141	0.79375	0.00043285	545.3167173682548	84.635	2.8459	84.658	83.84	86.686	0.023125	0.030663	8.6927E-05	NaN	9.3831	387	132	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7199100			7282	1219	4890	4927							0.07820799534761136
IEKTFKVR	8	Unmodified	_IEKTFKVR_					0	0	0			REV__nc|ENSG00000123908|Q9UKV8-2|AGO2;REV__AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	REV__nc|ENSG00000123908|Q9UKV8-2|AGO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.6344299316406	2	510.813659	1019.61277	0.54083	0.00027626	-1.9182	-0.00097983	-1.3773	-0.00070357	510.8124788425874	98.362	0.089241	98.403	98.342	98.431	0.041939					5	3	2	0	0	0	0.3576	1	24897	24897		1.8442	0.19162	1	33814	+		7283	8939;7700	4891	4928	9989	9989					0.10374326093904074
IEKVVKIP	8	Unmodified	_IEKVVKIP_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	463.3102722167969	2	463.307678	924.600803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.09	111.59	112.59	0.014595								0	0	0	0.38822	1	28577	28577		4.756	0	1				7284	7577	4892	4929	9990	9990					0.13548709350720856
IELCACQGEE	10	Unmodified	_IELCACQGEE_					0	0	0			REV__ENST00000360458.5_1_X:102940136-102942963:-|nuORF	REV__ENST00000360458.5_1_X:102940136-102942963:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7290649414062	2	547.728274	1093.442	0.58617	0.00032106	1.1166	0.00061158	1.7027	0.00093264	547.728748098315	93.035	0.36412	93.072	92.949	93.313	0.037369					36	16	3	0	0	0	0.44496	1	23300	23300		5.7319	0	1	142420	+		7285	11537	4893	4930	9991	9991					-0.10098740402031581
IEMFEEEEM	9	Unmodified	_IEMFEEEEM_					0	0	0			REV__ENSG00000203926|ENST00000370518|SPANXA2	REV__ENSG00000203926|ENST00000370518|SPANXA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7349243164062	2	593.735765	1185.45698	0.2886	0.00017135	-1.0472	-0.00062176	-0.7586	-0.00045041	593.734963919608	61.584	1.2701	61.584	61.305	62.575	0					174	59	4	0	0	0	0.21398	1	13835	13835		16.942	5.302	1	4867600	+		7286	10817	4894	4931	9992	9992					-0.12833293324706574
IEMKRYLGYNL	11	Unmodified	_IEMKRYLGYNL_					0	0	0			REV__ENST00000520170.1_1_6:114281018-114292096:-|nuORF	REV__ENST00000520170.1_1_6:114281018-114292096:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.58428955078125	3	467.251595	1398.73296	0.34253	0.00016005	-2.7842	-0.0013009	-2.4417	-0.0011409	467.25041695343094	68.291	0.50862	68.291	68.049	68.558	0					33	17	3	0	0	0	0.38806	1	15916	15916		7.0371	4.4058	1	133880	+		7287	8809	4895	4932	9993	9993					0.04953946305363388
IEMKRYLGYNL	11	Unmodified	_IEMKRYLGYNL_					0	0	0			REV__ENST00000520170.1_1_6:114281018-114292096:-|nuORF	REV__ENST00000520170.1_1_6:114281018-114292096:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	467.251595	1398.73296	0.34253	0.00016005	-2.7842	-0.0013009	-2.4417	-0.0011409	467.25041695343094	68.291	0.50862	68.291	68.049	68.558	0	-0.0079766	-0.00026138	NaN	7.0371	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133880	+		7288	8809	4895	4932							0.04953946305363388
IEMKRYLGYNL	11	Unmodified	_IEMKRYLGYNL_					0	0	0			REV__ENST00000520170.1_1_6:114281018-114292096:-|nuORF	REV__ENST00000520170.1_1_6:114281018-114292096:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	467.251595	1398.73296	0.23658	0.00011054	-2.5166	-0.0011759	-2.2801	-0.0010654	467.58477592616475	68.243	0.48763	68.307	68.073	68.56	0.063507	0.0079766	0.00011373	NaN	7.0371	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195290	+		7289	8809	4895	4932							0.04953946305363388
IEMPNNGWEI	10	Unmodified	_IEMPNNGWEI_					0	0	0			REV__ENSG00000171246|ENST00000306773|NPTX1	REV__ENSG00000171246|ENST00000306773|NPTX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7793579101562	2	601.779156	1201.54376	0.31004	0.00018658	-0.15309	-9.2127E-05	0.15695	9.4449E-05	601.7790745950954	49.426	3.0019	49.426	48.123	51.124	0					274	104	4	0	0	0	0.39662	1	10448	10448		12.241	2.8575	1	563460	+		7290	10249	4896	4933	9994	9994					-0.04895125987945903
IEMPNNGWEI	10	Unmodified	_IEMPNNGWEI_					0	0	0			REV__ENSG00000171246|ENST00000306773|NPTX1	REV__ENSG00000171246|ENST00000306773|NPTX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7794189453125	2	601.779156	1201.54376	0.30004	0.00018056	-0.031609	-1.9022E-05	0.26843	0.00016154	601.7791707091225	49.29	2.7303	49.367	48.353	51.083	0.076607					239	97	4	0	0	0	0.33001	1	9877	9877		19.362	1.2156	1	433710	+		7291	10249	4896	4933	9995	9995					-0.04895125987945903
IEMQDHLLTC	10	Unmodified	_IEMQDHLLTC_					0	0	0			REV__ENST00000491615.5_1_13:51102044-51102324:+|nuORF	REV__ENST00000491615.5_1_13:51102044-51102324:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3407592773438	2	601.780841	1201.54713	0.30192	0.00018169	-2.3838	-0.0014346	-2.0819	-0.0012529	601.7792537061717	52.668	0.28566	52.668	52.527	52.813	0					12	9	2	0	0	0	0.31803	1	11082	11082		3.2813	1.2216	1	31208	+		7292	12151	4897	4934	9996	9996					-0.045581992056213494
IEMRSSQNS	9	Unmodified	_IEMRSSQNS_					0	0	0			REV__ABCA13|p.E1876Q|1|0.26|ENSG00000179869|chr7:48275292-48275292|G/C|missense_variant	REV__ABCA13|p.E1876Q|1|0.26|ENSG00000179869|chr7:48275292-48275292|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2451171875	2	526.24548	1050.47641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.239	1	20.337	19.837	20.837	0.09844								0	0	0	0.28807	1	1462	1462		1.4819	0.68827	1		+		7293	7683	4898	4935	9997	9997					-0.04681156198921599
IEMSHRNQ	8	Unmodified	_IEMSHRNQ_					0	0	0			REV__nc|ENSG00000154447|Q7Z6J0-3|SH3RF1	REV__nc|ENSG00000154447|Q7Z6J0-3|SH3RF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.74261474609375	2	507.742908	1013.47126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.172	1	87.172	86.672	87.672	0								0	0	0	0.38822	1	21648	21648		7.2892	0	1		+		7294	9713	4899	4936	9998	9998					-0.034934152708729016
IENILGNAIS	10	Unmodified	_IENILGNAIS_					0	0	0			REV__ENSG00000101138|ENST00000217109|CSTF1	REV__ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2799072265625	2	522.290214	1042.56587	0.27332	0.00014275	0.081616	4.2627E-05	0.35494	0.00018538	522.2901153893953	52.794	0.74882	52.862	52.604	53.353	0.067173					120	32	5	0	0	0	0.4101	1	11175	11175		10.8	1.4164	1	2441300	+		7295	8411	4900	4937	9999	9999					0.04629421752088092
IENRMYNNC	9	Unmodified	_IENRMYNNC_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-3|SPG11	REV__nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2911376953125	2	578.747333	1155.48011	0.39966	0.0002313	1.4367	0.00083149	1.8364	0.0010628	578.7480735227159	91.665	0.21436	91.701	91.558	91.773	0.035446					10	7	2	0	0	0	0.25281	1	22835	22835		6.7232	0	1	89141	+		7296	8497	4901	4938	10000	10000					-0.09140809696714314
IEPEWHKL	8	Unmodified	_IEPEWHKL_					0	0	0			REV__ENST00000482745.5_1_6:32607639-32610538:+|nuORF	REV__ENST00000482745.5_1_6:32607639-32610538:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2822265625	2	526.282192	1050.54983	0.34823	0.00018327	-0.15804	-8.3174E-05	0.19019	0.00010009	526.2820179033812	64.779	0.64884	64.848	64.608	65.257	0.068916					43	24	2	0	0	0	0.46028	1	14739	14739		18.146	1.9972	1	351700	+		7297	10833	4902	4939	10001	10001					0.026577603058512977
IEPRQRLHC	9	Unmodified	_IEPRQRLHC_					0	0	0			REV__ENST00000403150.5_1_7:1577170-1577704:+|nuORF	REV__ENST00000403150.5_1_7:1577170-1577704:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.3094482421875	2	576.308749	1150.60295	0.42174	0.00024305	0.63898	0.00036825	1.0607	0.0006113	576.3092329619616	96.422	0.56555	96.462	96.199	96.765	0.039772					86	30	4	0	0	0	0.12809	1	24320	24320		26.884	0	1	1212300	+		7298	11758	4903	4940	10002	10002					0.03366814816877195
IEPRSLHPLF	10	Unmodified	_IEPRSLHPLF_					0	0	0			REV__ENST00000301633.8_1_17:76220872-76221046:+|nuORF	REV__ENST00000301633.8_1_17:76220872-76221046:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.8985290527344	3	403.564391	1207.67134	0.38309	0.0001546	-0.36219	-0.00014617	0.020899	8.4342E-06	403.5641241850383	66.173	0.60963	66.24	65.971	66.581	0.066872					51	22	3	0	0	0	0.31705	1	15067	15067		8.4443	0.83535	1	180420	+		7299	11348	4904	4941	10003	10003					0.07581382668354308
IEQKNINKIF	10	Unmodified	_IEQKNINKIF_					0	0	0			REV__tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	REV__tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2431945800781	3	416.243317	1245.70812	0.37286	0.0001552	0.28871	0.00012017	0.66156	0.00027537	416.5778469837255	52.78	0.81631	52.78	52.219	53.036	0					43	28	2	0	0	0	0.45904	1	11100	11100		3.0723	0	1	81290	+		7300	13197	4905	4942	10004	10004					0.09509634494270358
IEQKNINKIF	10	Unmodified	_IEQKNINKIF_					0	0	0			REV__tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	REV__tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2434997558594	3	416.243317	1245.70812	0.21467	8.9355E-05	0.14058	5.8514E-05	0.35525	0.00014787	416.24327751035304	48.327	0.7939	48.407	47.901	48.694	0.080032					33	27	2	0	0	0	0.44253	1	9654	9654		6.1918	0	1	47304	+		7301	13197	4905	4942	10005	10005					0.09509634494270358
IEQKNINKIF	10	Unmodified	_IEQKNINKIF_					0	0	0			REV__tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	REV__tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	416.243317	1245.70812	0.45869	0.00019093	0.025803	1.074E-05	0.48449	0.00020167	416.2433659723845	48.279	0.6059	48.279	47.877	48.483	0	-0.063915	-5.2987E-05	NaN	6.1918	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63880	+		7302	13197	4905	4942							0.09509634494270358
IEQSFQAF	8	Unmodified	_IEQSFQAF_					0	0	0			REV__ENSG00000129167|ENST00000682019|TPH1	REV__ENSG00000129167|ENST00000682019|TPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2380676269531	2	485.23745	968.460347	0.095408	4.6296E-05	0.0048102	2.3341E-06	0.10022	4.863E-05	485.23730185823104	71.431	0.62514	71.431	71.208	71.834	0					33	21	2	0	0	0	0.4433	2	16883	16883;16900		20.454	0	1	112170	+		7303	9030	4906	4943	10006;10007	10006					-0.02514494373508569
IERKFDEAL	9	Unmodified	_IERKFDEAL_					0	0	0			REV__ENST00000523409.5_2_8:59347484-59360107:+|nuORF	REV__ENST00000523409.5_2_8:59347484-59360107:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2789916992188	2	560.803488	1119.59242	0.21828	0.00012241	-0.13567	-7.6082E-05	0.082618	4.6333E-05	560.8031235946189	51.438	0.2023	51.438	51.327	51.529	0					15	6	3	0	0	0	0.2446	1	10732	10732		11.64	0	1	50126	+		7304	12307	4907	4944	10008	10008					0.03741110643431966
IERLQLEDVCV	11	Unmodified	_IERLQLEDVCV_					0	0	0		ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.5665588378906	3	439.567472	1315.68059	0.19206	8.4424E-05	-1.5497	-0.00068121	-1.3577	-0.00059678	439.5666774333132	37.757	0.90252	37.841	37.505	38.407	0.084476					44	31	2	0	0	0	0.4167	1	6544	6544		0.50596	0.23694	1	43886			7305	5379	4908	4945	10009	10009					0.035373631717448006
IERMKQKE	8	Unmodified	_IERMKQKE_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3029174804688	2	531.292233	1060.56991	0.82758	0.00043969	0.18599	9.8818E-05	1.0136	0.00053851	531.2922631433362	67.188	0.33859	67.253	67.101	67.439	0.065071					22	11	2	0	0	0	0.3576	1	15362	15362		4.756	0	1	112440			7306	4120	4909	4946	10010	10010					0.0420518797418481
IERWPNPPYM	10	Unmodified	_IERWPNPPYM_					0	0	0			REV__ENSG00000115825|ENST00000234179|PRKD3	REV__ENSG00000115825|ENST00000234179|PRKD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88201904296875	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.805	1	45.805	45.305	46.305	0								0	0	0	0.33959	1	9046	9046		0.69767	0	1		+		7307	8796	4910	4947	10011	10011					-0.016068539630396117
IESWLELFN	9	Unmodified	_IESWLELFN_					0	0	0			REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF	REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7913818359375	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.131	1	79.131	78.631	79.631	0								0	0	0	0.2428	1	19198	19198		10.824	0	1		+		7308	8123	4911	4948	10012	10012					0.0018230589485028759
IESWLELFN	9	Unmodified	_IESWLELFN_					0	0	0			REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF	REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7911987304688	2	575.792589	1149.57063	0.25678	0.00014785	-0.66477	-0.00038277	-0.40799	-0.00023492	575.7919775137258	79.235	0.73627	79.262	78.783	79.519	0.026428					44	25	2	0	0	0	0.26684	1	19031	19031		10.824	1.4408	1	118200	+		7309	8123	4911	4948	10013	10013					0.0018230589485028759
IETALLFLS	9	Unmodified	_IETALLFLS_					0	0	0		ENST00000382040.3_1_2:7036249-7036336:+|nuORF	ENST00000382040.3_1_2:7036249-7036336:+|nuORF	ENST00000382040.3_1_2:7036249-7036336:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2738952636719	2	503.794601	1005.57465	0.25889	0.00013043	2.2638	0.0011405	2.5227	0.0012709	503.79588514347324	55.852	0.078712	55.917	55.868	55.946	0.065128					4	2	2	0	0	0	0.25644	1	11946	11946		3.9444	0	1	24418			7310	6298	4912	4949	10014	10014					0.07208395388579447
IETHGMAVSW	10	Oxidation (M)	_IETHGM(Oxidation (M))AVSW_		IETHGM(1)AVSW		IETHGM(46)AVSW	0	0	1		ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant;ENSG00000117983|ENST00000529681|MUC5B	ENST00000525715.5_1_11:1244314-1260349:+|nuORF	ENST00000525715.5_1_11:1244314-1260349:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7644653320312	2	573.766049	1145.51754	0.22505	0.00012913	-0.71343	-0.00040934	-0.48838	-0.00028022	573.7636467612152	56.096	2.5815	56.162	55.705	58.287	0.066448					399	97	8	0	0	0	0.093158	1	11995	11995		46.021	6.0713	1	17614000			7311	2023	4913	4950	10015	10015		125			-0.04939395159453852
IETLAEKFR	9	Unmodified	_IETLAEKFR_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8319091796875	2	553.813856	1105.61316	-0.011455	-6.3437E-06	-1.2226	-0.00067709	-1.234	-0.00068343	554.3141233372203	44.19	0.49203	44.19	43.978	44.47	0					36	16	3	0	0	0	0.092418	2	8520	8520;8572		34.102	18.255	1	91669			7312	2467	4914	4951	10016;10017	10016					0.06457701023077789
IETLAEKFR	9	Unmodified	_IETLAEKFR_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8319702148438	2	553.813856	1105.61316	0.21497	0.00011905	-0.8222	-0.00045534	-0.60723	-0.00033629	553.8145163610158	44.087	0.30568	44.176	44.029	44.335	0.088924					20	9	3	0	0	0	0.12809	1	8399	8399		26.884	1.4843	1	73667			7313	2467	4914	4951	10018	10018					0.06457701023077789
IETYNRIIQL	10	Unmodified	_IETYNRIIQL_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5755310058594	3	421.574955	1261.70304	-0.18212	-7.6778E-05	0.6775	0.00028562	0.49537	0.00020884	421.57520502576835	41.071	1.9481	41.071	39.661	41.609	0					97	69	2	0	0	0	0.45773	1	7627	7627		3.3196	0	1	42526	+		7314	10452	4915	4952	10019	10019					0.08265330631684265
IEVNMHITF	9	Unmodified	_IEVNMHITF_					0	0	0		ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENST00000554111.1_1_14:100376608-100381157:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.8236694335938	2	552.281334	1102.54812	0.51542	0.00028466	-1.4196	-0.00078404	-0.90422	-0.00049939	552.2807302242105	57.267	0.90745	57.267	57.028	57.935	0					71	32	3	0	0	0	0.24929	1	12539	12539		9.3831	0.63772	1	219760			7315	7114	4916	4953	10020	10020					0.0009438322556434287
IEVNMHITF	9	Unmodified	_IEVNMHITF_					0	0	0		ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENST00000554111.1_1_14:100376608-100381157:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.281334	1102.54812	0.58482	0.00032299	-1.1187	-0.00061785	-0.5339	-0.00029486	552.2806980581053	57.221	0.53011	57.289	56.993	57.523	0.068375	0.01118	0.00018456	NaN	9.3831	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164660			7316	7114	4916	4953							0.0009438322556434287
IEWGNNPMEI	10	Unmodified	_IEWGNNPMEI_					0	0	0		ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7780151367188	2	601.779156	1201.54376	0.45596	0.00027438	-0.028646	-1.7238E-05	0.42731	0.00025715	601.7790851141133	47.041	1.8522	47.041	46.6	48.453	0					160	70	3	0	0	0	0.46083	1	9747	9747		2.7352	0	1	416320			7317	4432	4917	4954	10021	10021					-0.04895125987945903
IEWGNNPMEI	10	Unmodified	_IEWGNNPMEI_					0	0	0		ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7794189453125	2	601.779156	1201.54376	0.47582	0.00028634	0.0076707	4.6161E-06	0.4835	0.00029096	601.7790726975923	47.007	1.9402	47.09	46.599	48.539	0.083096					182	80	3	0	0	0	0.38912	2	9418	9418;9500		13.042	0	1	327090			7318	4432	4917	4954	10022;10023	10022					-0.04895125987945903
IEWNGPTGAVE	11	Unmodified	_IEWNGPTGAVE_					0	0	0			REV__ENST00000531068.5_1_11:64949924-64950017:+|nuORF	REV__ENST00000531068.5_1_11:64949924-64950017:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7836303710938	2	586.782753	1171.55095	0.56272	0.0003302	1.6731	0.00098176	2.2359	0.001312	586.7836233409463	89.31	0.72917	89.342	89.117	89.846	0.032257					44	27	2	0	0	0	0.31274	1	22205	22205		16.566	1.3174	1	182830	+		7319	12356	4918	4955	10024	10024					-0.0279607011589178
IEWNGPTGAVE	11	Unmodified	_IEWNGPTGAVE_					0	0	0			REV__ENST00000531068.5_1_11:64949924-64950017:+|nuORF	REV__ENST00000531068.5_1_11:64949924-64950017:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	586.782753	1171.55095	0.39543	0.00023203	1.8499	0.0010855	2.2453	0.0013175	586.7837324327517	89.394	0.68578	89.394	89.053	89.739	0	0.026216	9.3411E-05	NaN	16.566	49	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158110	+		7320	12356	4918	4955							-0.0279607011589178
IEWNGPTGAVE	11	Unmodified	_IEWNGPTGAVE_					0	0	0			REV__ENST00000531068.5_1_11:64949924-64950017:+|nuORF	REV__ENST00000531068.5_1_11:64949924-64950017:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	586.782753	1171.55095	0.56272	0.0003302	1.6731	0.00098176	2.2359	0.001312	586.7836233409463	89.31	0.72917	89.342	89.117	89.846	0.032257	-0.026216	-0.00011402	NaN	16.566	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182830	+		7321	12356	4918	4955							-0.0279607011589178
IEYEIIWKD	9	Unmodified	_IEYEIIWKD_					0	0	0			REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1	REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.8134765625	2	604.813522	1207.61249	0.35237	0.00021312	0.37406	0.00022623	0.72643	0.00043935	604.8136482163914	90.374	0.65285	90.408	90.143	90.796	0.034065					87	27	5	0	0	0	0.30005	1	22568	22568		6.7232	1.4263	1	1140000	+		7322	13092	4919	4956	10025	10025					0.016988615833724907
IEYKAAVTL	9	Unmodified	_IEYKAAVTL_					0	0	0		nc|ENSG00000173226|Q15051-2|IQCB1;ENSG00000173226|ENST00000310864|IQCB1	nc|ENSG00000173226|Q15051-2|IQCB1	nc|ENSG00000173226|Q15051-2|IQCB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7554931640625	2	504.292225	1006.5699	0.34253	0.00017274	0.44591	0.00022487	0.78844	0.0003976	504.2925622113835	87.742	0.29627	87.742	87.498	87.795	0					15	10	2	0	0	0	0.25699	1	21757	21757		3.5965	0.70727	1	51305			7323	4535	4920	4957	10026	10026					0.06687511245809219
IEYKAAVTL	9	Unmodified	_IEYKAAVTL_					0	0	0		nc|ENSG00000173226|Q15051-2|IQCB1;ENSG00000173226|ENST00000310864|IQCB1	nc|ENSG00000173226|Q15051-2|IQCB1	nc|ENSG00000173226|Q15051-2|IQCB1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	504.292225	1006.5699	0.19544	9.8558E-05	0.40496	0.00020422	0.6004	0.00030278	504.2924020538847	87.669	0.23251	87.699	87.534	87.767	0.030037	-0.021236	-5.2324E-06	NaN	3.5965	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83583			7324	4535	4920	4957							0.06687511245809219
IFADTLTLLF	10	Unmodified	_IFADTLTLLF_					0	0	0		ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3294067382812	2	577.328808	1152.64306	0.03447	1.9901E-05	0.34986	0.00020199	0.38433	0.00022189	577.3290088973624	106.17	0.36145	106.17	106	106.36	0					60	32	2	0	0	0	0.25276	2	27355	27355;27405		27.629	10.516	1	194760			7325	1348	4921	4958	10027;10028	10027					0.07284639968429474
IFADTLTLLF	10	Unmodified	_IFADTLTLLF_					0	0	0		ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.8302001953125	2	577.328808	1152.64306	0.35564	0.00020532	-0.14829	-8.5615E-05	0.20734	0.00011971	577.3286875604565	106.07	0.4257	106.1	105.96	106.39	0.029739					77	48	3	0	0	0	0.22666	1	27192	27192		30.637	10.183	1	233980			7326	1348	4921	4958	10029	10029					0.07284639968429474
IFASFNDTF	9	Unmodified	_IFASFNDTF_					0	0	0		ENST00000519690.1_1_5:149827146-149827347:-|nuORF;ENSG00000164587|ENST00000407193|RPS14	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2509155273438	2	531.250557	1060.48656	0.35455	0.00018836	-0.20261	-0.00010764	0.15194	8.072E-05	531.2506025946733	76.813	0.30009	76.813	76.675	76.975	0					18	10	2	0	0	0	0.005983	1	18500	18500		79.596	43.469	1	99217			7327	4016	4922	4959	10030	10030					-0.04126225202048772
IFASFNDTF	9	Unmodified	_IFASFNDTF_					0	0	0		ENST00000519690.1_1_5:149827146-149827347:-|nuORF;ENSG00000164587|ENST00000407193|RPS14	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	531.250557	1060.48656	0.47316	0.00025137	0.61067	0.00032442	1.0838	0.00057579	531.2509808395383	76.761	0.35684	76.8	76.639	76.996	0.03923	-0.0066286	0.00054528	NaN	79.596	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74210			7328	4016	4922	4959							-0.04126225202048772
IFAVKMNEQ	9	Oxidation (M)	_IFAVKM(Oxidation (M))NEQ_		IFAVKM(1)NEQ		IFAVKM(63)NEQ	0	0	1			REV__ENSG00000181273|ENST00000326855|OR5AK2	REV__ENSG00000181273|ENST00000326855|OR5AK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2782592773438	2	548.278792	1094.54303	0.23418	0.00012839	-0.96606	-0.00052967	-0.73189	-0.00040128	548.2781022434186	89.635	0.51562	89.669	89.416	89.932	0.034058					45	19	3	0	0	0	0.013982	1	22240	22240		62.573	18.166	1	360490	+		7329	10529	4923	4960	10031	10031		342			-0.00045920637035123946
IFCIVIGIL	9	Unmodified	_IFCIVIGIL_					0	0	0		tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.8063659667969	2	495.806457	989.598361	0.69143	0.00034282	-0.60206	-0.00029851	0.089368	4.4309E-05	495.80591902748114	85.57	0.6239	85.595	85.358	85.982	0.025177					42	24	3	0	0	0	0.23437	1	21003	21003		14.582	0	1	235950			7330	13468	4924	4961	10032	10032					0.10314537621388808
IFCIVIGIL	9	Unmodified	_IFCIVIGIL_					0	0	0		tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	495.806457	989.598361	0.58631	0.0002907	-0.54092	-0.00026819	0.045385	2.2502E-05	495.80607666854814	85.607	0.76513	85.607	85.339	86.104	0	0.0061115	2.1568E-05	NaN	14.582	51	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224400			7331	13468	4924	4961							0.10314537621388808
IFCSMPGIE	9	Unmodified	_IFCSMPGIE_					0	0	0			REV__ENST00000525455.5_1_11:62530233-62533976:+|nuORF	REV__ENST00000525455.5_1_11:62530233-62533976:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.78155517578125	2	498.730089	995.445625	0.31648	0.00015784	-3.356	-0.0016737	-3.0395	-0.0015159	498.7281850188187	78.824	0.53403	78.824	78.54	79.074	0					20	18	2	0	0	0	0.20845	1	19055	19055		21.747	4.8044	1	74796	+		7332	10138	4925	4962	10033	10033					-0.05228025837527639
IFCWAPFFL	9	Unmodified	_IFCWAPFFL_					0	0	0		ENSG00000124089|ENST00000243911|MC3R	ENSG00000124089|ENST00000243911|MC3R	ENSG00000124089|ENST00000243911|MC3R	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7252807617188	2	572.288431	1142.56231	0.19336	0.00011066	3.1506	0.0018031	3.344	0.0019137	572.2904565126126	90.085	0.63496	90.085	89.86	90.495	0					32	25	2	0	0	0	0.237	1	22485	22485		14.582	1.0738	1	237930			7333	2235	4926	4963	10034	10034					-0.0032691955548216356
IFDAIGLSE	9	Unmodified	_IFDAIGLSE_					0	0	0			REV__tr|U7STY9|U7STY9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01615PE=4SV=1	REV__tr|U7STY9|U7STY9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01615PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.6037902832031	2	482.752933	963.491313	-0.076794	-3.7072E-05	0.27256	0.00013158	0.19577	9.4507E-05	482.7528788163885	49.61	0.52626	49.686	49.456	49.982	0.076607					30	18	2	0	0	0	0.18479	1	10072	10072		26.884	3.7352	1	151820	+		7334	13179	4927	4964	10035	10035					0.00810658940713438
IFDETKGYVH	10	Unmodified	_IFDETKGYVH_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.802734375	2	604.800946	1207.58734	0.39476	0.00023875	2.4245	0.0014663	2.8192	0.0017051	604.8025928623886	35.987	0.67709	35.987	35.675	36.352	0					34	26	2	0	0	0	0.45794	1	6034	6034		3.2813	0.28607	1	30678	+		7335	8894	4928	4965	10036	10036					-0.008151932191822198
IFDLQSNTVL	10	Unmodified	_IFDLQSNTVL_					0	0	0		ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.3106689453125	2	575.311146	1148.60774	0.25703	0.00014787	-0.28122	-0.00016179	-0.024186	-1.3915E-05	575.3108161223411	78.91	0.5486	78.91	78.705	79.254	0					28	18	2	0	0	0	0.22608	1	19131	19131		30.703	12.557	1	205370			7336	2213	4929	4966	10037	10037					0.03937977440614304
IFDLQSNTVL	10	Unmodified	_IFDLQSNTVL_					0	0	0		ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8128051757812	2	575.311146	1148.60774	0.30897	0.00017775	-0.067004	-3.8548E-05	0.24197	0.00013921	575.310824320755	78.892	0.54244	78.922	78.684	79.226	0.030159					34	18	3	0	0	0	0.18348	1	18968	18968		35.612	12.876	1	225310			7337	2213	4929	4966	10038	10038					0.03937977440614304
IFDLSEVL	8	Unmodified	_IFDLSEVL_					0	0	0		ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant	ENSG00000185650|ENST00000439696|ZFP36L1	ENSG00000185650|ENST00000439696|ZFP36L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.25775146484375	2	468.257851	934.501149	0.40187	0.00018818	-0.26171	-0.00012255	0.14016	6.5629E-05	468.2575715231699	91.998	0.69781	91.998	91.707	92.405	0					64	25	4	0	0	0	0.042611	2	23115	23069;23115		101.72	7.8386	1	939670			7338	5034	4930	4967	10039;10040	10040					0.031278469460858105
IFDLSEVL	8	Unmodified	_IFDLSEVL_					0	0	0		ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant	ENSG00000185650|ENST00000439696|ZFP36L1	ENSG00000185650|ENST00000439696|ZFP36L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.25787353515625	2	468.257851	934.501149	0.14644	6.8572E-05	-0.0863	-4.0411E-05	0.06014	2.8161E-05	468.25770035169813	91.961	0.68183	91.998	91.72	92.402	0.03653					57	23	3	0	0	0	0.02459	3	22903	22903;22946;22987		93.883	14.033	1	698390			7339	5034	4930	4967	10041;10042;10043	10041					0.031278469460858105
IFDQSGTYL	9	Unmodified	_IFDQSGTYL_					0	0	0		ENST00000539960.1_1_11:60665249-60666641:-|nuORF;ENSG00000110107|ENST00000227524|PRPF19	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2559204101562	2	522.25584	1042.49713	0.74055	0.00038676	-0.33693	-0.00017596	0.40362	0.00021079	522.2555509342591	66.622	1.2143	66.622	66.428	67.642	0					90	46	3	0	0	0	0.0043591	2	15372	15372;15414		96.367	48.618	1	797450			7340	1655	4931	4968	10044;10045	10044					-0.022422425476179342
IFDQSGTYL	9	Unmodified	_IFDQSGTYL_					0	0	0		ENST00000539960.1_1_11:60665249-60666641:-|nuORF;ENSG00000110107|ENST00000227524|PRPF19	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.255859375	2	522.25584	1042.49713	0.5893	0.00030777	-0.16429	-8.58E-05	0.42501	0.00022197	522.2556454701253	66.618	1.2145	66.683	66.451	67.666	0.065063					79	44	3	0	0	0	0.0042616	3	15237	15195;15237;15287		100.09	43.914	1	878410			7341	1655	4931	4968	10046;10047;10048	10047					-0.022422425476179342
IFDRVLTEL	9	Unmodified	_IFDRVLTEL_					0	0	0		nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB	nc|ENSG00000186350|P19793-2|RXRA	nc|ENSG00000186350|P19793-2|RXRA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.31640625	2	553.316232	1104.61791	0.64952	0.00035939	-0.14928	-8.2602E-05	0.50024	0.00027679	553.316125777119	69.871	0.47154	69.871	69.643	70.114	0					38	16	3	0	0	0	0.047066	1	16373	16373		43.982	2.1422	1	265360			7342	3135	4932	4969	10049	10049					0.06978585165848017
IFDRVLTEL	9	Unmodified	_IFDRVLTEL_					0	0	0		nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB	nc|ENSG00000186350|P19793-2|RXRA	nc|ENSG00000186350|P19793-2|RXRA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	553.316232	1104.61791	0.55885	0.00030922	-0.30549	-0.00016903	0.25337	0.00014019	553.3161245588898	69.769	0.51836	69.83	69.61	70.128	0.060562	-0.020472	-8.3282E-05	NaN	43.982	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167360			7343	3135	4932	4969							0.06978585165848017
IFDSKVTEI	9	Unmodified	_IFDSKVTEI_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2869873046875	2	526.28714	1050.55973	0.178	9.3677E-05	0.047837	2.5176E-05	0.22583	0.00011885	526.287013336966	53.036	0.70334	53.036	52.841	53.544	0					71	28	4	0	0	0	0.0074066	1	11224	11224		91.085	31.011	1	764840			7344	1837	4933	4970	10050	10050					0.03646903520575506
IFDSKVTEI	9	Unmodified	_IFDSKVTEI_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2872924804688	2	526.28714	1050.55973	0.2733	0.00014383	0.042794	2.2522E-05	0.31609	0.00016635	526.2870664827773	52.984	0.55999	53.049	52.851	53.411	0.06543					76	25	4	0	0	0	0.01073	1	11107	11107		64.927	33.658	1	691820			7345	1837	4933	4970	10051	10051					0.03646903520575506
IFDVASIIL	9	Unmodified	_IFDVASIIL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7973327636719	2	495.797143	989.579734	0.62026	0.00030753	-0.034532	-1.7121E-05	0.58573	0.0002904	495.7969091003588	99.434	0.39253	99.434	99.244	99.636	0					34	20	2	0	0	0	0.028398	3	25365	25365;25411;25417		52.268	18.166	1	249970			7346	5216	4934	4971	10052;10053;10054	10052					0.08452699251199647
IFDVASIIL	9	Unmodified	_IFDVASIIL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.79730224609375	2	495.797143	989.579734	0.61743	0.00030612	0.019022	9.4309E-06	0.63645	0.00031555	495.7968990078833	99.422	0.41356	99.465	99.24	99.654	0.042839					63	26	3	0	0	0	0.0097093	2	25217	25179;25217		68.081	23.674	1	524390			7347	5216	4934	4971	10055;10056	10056					0.08452699251199647
IFDWIGYLI	9	Unmodified	_IFDWIGYLI_					0	0	0		tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8841552734375	2	570.310418	1138.60628	0.125	7.1292E-05	-3.2796	-0.0018704	-3.1546	-0.0017991	570.3087015872588	73.152	0.42838	73.204	72.866	73.294	0.052567					21	14	2	0	0	0	0.13538	1	17191	17191		36.044	5.4077	1	117260			7348	13509	4935	4972	10057	10057					0.04252388142526797
IFDWVEANL	9	Unmodified	_IFDWVEANL_					0	0	0		nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3	nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432-4|EIF4G3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.79248046875	2	553.779482	1105.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.209	1	91.209	90.709	91.709	0								0	0	0	0.22786	1	22872	22872		13.906	0	1				7349	812	4936	4973	10058	10058					-0.004139632766282375
IFDWVEANL	9	Unmodified	_IFDWVEANL_					0	0	0		nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3	nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432-4|EIF4G3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.79248046875	2	553.779482	1105.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.267	1	91.303	90.803	91.803	0.035446								0	0	0	0.19984	1	22732	22732		18.146	0	1				7350	812	4936	4973	10059	10059					-0.004139632766282375
IFEEDKHFF	9	Unmodified	_IFEEDKHFF_					0	0	0		SLC8A3|p.E478K|1|0.14|ENSG00000100678|chr14:70166991-70166991|C/T|missense_variant	SLC8A3|p.E478K|1|0.14|ENSG00000100678|chr14:70166991-70166991|C/T|missense_variant	SLC8A3|p.E478K|1|0.14|ENSG00000100678|chr14:70166991-70166991|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2916259765625	2	606.290214	1210.56587	0.94341	0.00057198	3.5071	0.0021263	4.4505	0.0026983	606.2912628408187	98.634	0.43258	98.676	98.325	98.758	0.041931					56	23	3	0	0	0	0.10067	1	25001	25001		32.305	1.6689	1	3300900			7351	13370	4937	4974	10060	10060					-0.03098578247909245
IFEKGLELF	9	Unmodified	_IFEKGLELF_					0	0	0			REV__ENSG00000157445|ENST00000474759|CACNA2D3	REV__ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3339233398438	2	548.307875	1094.6012	0.3366	0.00018456	0.080126	4.3934E-05	0.41672	0.00022849	548.3078332274462	95.145	0.52852	95.145	94.938	95.467	0					35	22	2	0	0	0	0.17491	1	24129	24129		28.487	7.6156	1	158470	+		7352	9777	4938	4975	10061	10061					0.05768084279884533
IFELDLWAL	9	Unmodified	_IFELDLWAL_					0	0	0			REV__ENSG00000125965|ENST00000374369|GDF5	REV__ENSG00000125965|ENST00000374369|GDF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.305908203125	2	560.307875	1118.6012	0.30947	0.0001734	-3.0135	-0.0016885	-2.704	-0.0015151	560.3059048513545	59.825	0.50269	59.897	59.735	60.237	0.072342					30	18	3	0	0	0	0.17247	1	13190	13190		21.747	0	1	140280	+		7353	8980	4939	4976	10062	10062					0.046640842798979065
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.2876586914062	2	607.287474	1212.5604	0.62643	0.00038042	-0.1827	-0.00011095	0.44372	0.00026947	607.2872491021944	67.957	1.5707	67.957	67.669	69.239	0					195	58	5	0	0	0	3.513E-06	6	15780	15735;15780;15956;15998;16045;16141		155.03	120.62	1	4651300			7354	3660	4940	4977	10063;10064;10065;10066;10067;10068	10064					-0.03738257039731252
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.2877197265625	2	607.287474	1212.5604	0.77319	0.00046955	0.67325	0.00040886	1.4464	0.0008784	607.2876407532518	69.236	1.0642	69.236	69.132	70.196	0					62	37	2	0	0	0	0.065576	5	16287	16200;16231;16255;16287;16333		39.95	26.044	1	173200			7355	3660	4940	4977	10069;10070;10071;10072;10073	10072					-0.03738257039731252
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8255004882812	2	607.287474	1212.5604	0.63732	0.00038703	-0.28655	-0.00017402	0.35076	0.00021301	607.2872553978168	71.506	0.81848	71.506	70.937	71.755	0					46	27	2	0	0	0	0.25051	1	16809	16809		7.9102	1.187	1	87214			7356	3660	4940	4977	10074	10074					-0.03738257039731252
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2876586914062	2	607.287474	1212.5604	0.8456	0.00051352	-0.34972	-0.00021238	0.49588	0.00030114	607.2871425801706	67.886	2.3722	67.949	67.696	70.068	0.063499					209	89	5	0	0	0	3.513E-06	10	15619	15576;15603;15619;15754;15803;15860;15953;16009;16049;16092		155.03	115.07	1	4960900			7357	3660	4940	4977	10075;10076;10077;10078;10079;10080;10081;10082;10083;10084	10077					-0.03738257039731252
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	607.287474	1212.5604	0.79226	0.00048113	-0.42239	-0.00025651	0.36987	0.00022462	607.2870820904616	71.145	0.99049	71.203	70.933	71.924	0.058578	-0.15137	-7.8962E-05	NaN	7.9102	41	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114500			7358	3660	4940	4977							-0.03738257039731252
IFFGGLVFKF	10	Unmodified	_IFFGGLVFKF_					0	0	0		ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7890014648438	2	587.836603	1173.65865	0.44136	0.00025945	-0.31063	-0.0001826	0.13074	7.6852E-05	587.8363577142816	90.308	0.75623	90.308	90.184	90.94	0					44	28	2	0	0	0	0.30149	1	22685	22685		20.454	11.708	1	147480			7359	4935	4941	4978	10085	10085					0.07876971276095901
IFFGGLVFKF	10	Unmodified	_IFFGGLVFKF_					0	0	0		ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.7890625	2	587.836603	1173.65865	0.31483	0.00018507	-0.068813	-4.0451E-05	0.24601	0.00014462	587.8365235826582	90.27	0.63216	90.304	90.195	90.827	0.034065					39	26	2	0	0	0	0.26901	1	22512	22512		32.305	16.458	1	234630			7360	4935	4941	4978	10086	10086					0.07876971276095901
IFFGIWLLF	9	Unmodified	_IFFGIWLLF_					0	0	0		tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.333251953125	2	578.333696	1154.65284	0.46411	0.00026841	-1.6056	-0.00092855	-1.1414	-0.00066014	578.3326104860633	82.023	0.92783	82.045	81.449	82.377	0.021866					72	33	3	0	0	0	0.18003	1	19818	19818		20.871	0	1	203440			7361	13706	4942	4979	10087	10087					0.08169872764460706
IFFHYLLF	8	Unmodified	_IFFHYLLF_					0	0	0			REV__tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	REV__tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7503662109375	2	550.302396	1098.59024	0.64013	0.00035226	-2.9097	-0.0016012	-2.2696	-0.001249	550.3001019268671	65.607	1.7219	65.673	65.232	66.954	0.066864					191	66	5	0	0	0	0.35256	1	14823	14823		17.087	2.5049	1	2157300	+		7362	13301	4943	4980	10088	10088					0.044887266962632566
IFFIFQLPF	9	Unmodified	_IFFIFQLPF_					0	0	0		nc|ENSG00000258806|Q8NGC8|OR11H7	nc|ENSG00000258806|Q8NGC8|OR11H7	nc|ENSG00000258806|Q8NGC8|OR11H7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.26513671875	2	586.331153	1170.64775	0.65124	0.00038184	-1.8062	-0.001059	-1.155	-0.00067721	586.8316437117351	74.715	0.10823	74.715	74.635	74.743	0					5	3	2	0	0	0	0.22289	1	17840	17840		12.532	0	1	58724			7363	7623	4944	4981	10089	10089					0.06925568901829138
IFFIWMFF	8	Unmodified	_IFFIWMFF_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8128051757812	2	575.793349	1149.57215	0.25678	0.00014785	-1.985	-0.0011429	-1.7282	-0.00099508	575.7919775137258	79.235	0.73627	79.262	78.783	79.519	0.026428					44	25	2	0	0	0	0.35759	1	18968	18968		11.114	0.29054	1	118200	+		7364	10343	4945	4982	10090	10090					0.0033426844991026883
IFFSIDVLA	9	Unmodified	_IFFSIDVLA_					0	0	0			REV__ABCA6|p.V1066I|1|0.23|ENSG00000154262|chr17:69096726-69096726|C/T|missense_variant	REV__ABCA6|p.V1066I|1|0.23|ENSG00000154262|chr17:69096726-69096726|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8070068359375	2	512.789318	1023.56408	0.54273	0.0002783	-0.54393	-0.00027892	-0.0012025	-6.1663E-07	512.7890361170201	92.127	0.4734	92.127	92.014	92.487	0					25	17	2	0	0	0	0.25209	1	23220	23220		12.532	3.9383	1	67986	+		7365	7684	4946	4983	10091	10091					0.053244127341372405
IFGSSLFFLL	10	Unmodified	_IFGSSLFFLL_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|47	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|47	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|47	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3135986328125	2	572.326068	1142.63758	0.46728	0.00026743	-0.081211	-4.6479E-05	0.38606	0.00022095	572.3259281605917	83.356	0.4613	83.356	83.173	83.634	0					32	15	3	0	0	0	0.37232	1	20545	20545		14.838	2.3067	1	105150			7366	180	4947	4984	10092	10092					0.07196961176623518
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7893676757812	2	512.789318	1023.56408	0.35696	0.00018305	-0.074308	-3.8104E-05	0.28266	0.00014494	512.7892232474057	94.809	1.2118	94.809	94.255	95.467	0					136	51	4	0	0	0	0.004541	4	23899	23899;24037;24081;24125		89.427	32.886	1	1531600			7367	2205;3441;1109	4948	4985	10093;10094;10095;10096	10093					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7896728515625	2	512.789318	1023.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.5	1	95.5	95	96	0								0	0	0	0.090962	1	24178	24178		36.044	5.8194	1				7368	2205;3441;1109	4948	4985	10097	10097					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7891845703125	2	512.789318	1023.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.544	1	95.544	95.044	96.044	0								0	0	0	0.0060266	1	24192	24192		70.716	23.795	1				7369	2205;3441;1109	4948	4985	10098	10098					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7894897460938	2	512.789318	1023.56408	0.28696	0.00014715	0.062813	3.221E-05	0.34978	0.00017936	512.7892790336966	94.629	1.3641	94.667	94.175	95.539	0.038086					146	56	4	0	0	0	0.0042188	2	23887	23887;23935		101.72	45.181	1	1705900			7370	2205;3441;1109	4948	4985	10099;10100	10099					0.053244127341372405
IFHAVFSMI	9	Unmodified	_IFHAVFSMI_					0	0	0		ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.784912109375	2	532.783513	1063.55247	0.38577	0.00020553	2.454	0.0013075	2.8398	0.001513	532.7849269453559	90.957	0.44704	90.957	90.762	91.209	0					24	15	2	0	0	0	0.29105	1	22792	22792		7.9102	0	1	391200			7371	2857	4949	4986	10101	10101					0.02323892439176234
IFHIMKRN	8	Unmodified	_IFHIMKRN_					0	0	0			REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.8011474609375	2	529.800029	1057.5855	-0.37841	-0.00020048	1.9274	0.0010212	1.549	0.00082068	529.8011121741757	15.348	0.15264	15.348	15.272	15.424	0					31	19	2	0	0	0	0.3576	1	526	526		2.3027	0.4585	1	17131	+		7372	13259	4950	4987	10102	10102					0.059015192818833384
IFHPTQPWVF	10	Unmodified	_IFHPTQPWVF_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.333740234375	2	636.332216	1270.64988	0.25683	0.00016343	1.0224	0.00065057	1.2792	0.000814	636.3329721470271	71.43	0.43172	71.43	71.269	71.701	0					21	14	2	0	0	0	0.35104	1	16874	16874		17.113	8.3675	1	178900			7373	5716	4951	4988	10103	10103					0.02537997639637979
IFIDEIDSF	9	Unmodified	_IFIDEIDSF_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.740478515625	2	549.771322	1097.52809	0.13662	7.5111E-05	0.67924	0.00037343	0.81587	0.00044854	549.7718756882144	86.656	0.4873	86.656	86.408	86.895	0					32	18	2	0	0	0	0.0085079	1	21483	21483		71.134	37.031	1	355120			7374	2896	4952	4989	10104	10104					-0.016770892333852316
IFIDEIDSF	9	Unmodified	_IFIDEIDSF_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7406005859375	2	549.771322	1097.52809	0.33672	0.00018512	0.38065	0.00020927	0.71737	0.00039439	549.7716376591735	86.672	0.47601	86.699	86.362	86.838	0.027573					34	21	2	0	0	0	0.00035688	1	21320	21320		104.8	62.844	1	286640			7375	2896	4952	4989	10105	10105					-0.016770892333852316
IFIDKIYSI	9	Unmodified	_IFIDKIYSI_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.3231201171875	2	556.323525	1110.6325	0.64494	0.00035879	-0.82718	-0.00046018	-0.18224	-0.00010139	556.3228611067218	70.799	0.57822	70.799	70.531	71.109	0					40	19	3	0	0	0	0.018465	1	16638	16638		59.368	0.68956	1	273440			7376	4265	4953	4990	10106	10106					0.0816065731398794
IFIDKIYSI	9	Unmodified	_IFIDKIYSI_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3236694335938	2	556.323525	1110.6325	0.86595	0.00048175	-1.1158	-0.00062072	-0.24981	-0.00013898	556.3229902172204	70.701	0.51388	70.76	70.595	71.109	0.059219					38	19	3	0	0	0	0.018465	1	16465	16465		59.368	0.68956	1	180660			7377	4265	4953	4990	10107	10107					0.0816065731398794
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.8005981445312	2	600.800414	1199.58628	0.5706	0.00034282	-0.14084	-8.4617E-05	0.42976	0.0002582	600.8000869691681	79.41	1.0056	79.41	79.074	80.079	0					74	34	3	0	0	0	0.015562	2	19303	19255;19303		71.708	56.459	1	866680			7378	2160	4954	4991	10108;10109	10109					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8004150390625	2	600.800414	1199.58628	0.30614	0.00018393	-0.019001	-1.1416E-05	0.28714	0.00017252	600.8002077842225	79.371	0.82938	79.397	79.162	79.991	0.026428					72	29	3	0	0	0	0.0080344	2	19138	19093;19138		78.06	56.314	1	763530			7379	2160	4954	4991	10110;10111	10111					-0.005534075881087119
IFIPEYKKM	9	Unmodified	_IFIPEYKKM_					0	0	0			REV__ENST00000366603.6_1_1:235331403-235331469:-|nuORF	REV__ENST00000366603.6_1_1:235331403-235331469:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.826171875	2	584.825378	1167.6362	0.28	0.00016375	0.12645	7.3954E-05	0.40645	0.00023771	584.8255175315323	25.509	0.22639	25.601	25.477	25.703	0.091507					32	17	2	0	0	0	0.34704	1	2874	2874		0.52476	0	1	20513	+		7380	11549	4955	4992	10112	10112					0.05909003816191216
IFIPEYKKM	9	Unmodified	_IFIPEYKKM_					0	0	0			REV__ENST00000366603.6_1_1:235331403-235331469:-|nuORF	REV__ENST00000366603.6_1_1:235331403-235331469:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	584.825378	1167.6362	0.0069165	4.0449E-06	0.0040561	2.3721E-06	0.010973	6.417E-06	584.8254290299394	25.644	0.24972	25.644	25.504	25.754	0	0.02164	-8.3545E-05	NaN	0.52476	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16732	+		7381	11549	4955	4992							0.05909003816191216
IFIPEYKKM	9	Unmodified	_IFIPEYKKM_					0	0	0			REV__ENST00000366603.6_1_1:235331403-235331469:-|nuORF	REV__ENST00000366603.6_1_1:235331403-235331469:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	584.825378	1167.6362	0.28	0.00016375	0.12645	7.3954E-05	0.40645	0.00023771	584.8255175315323	25.509	0.22639	25.601	25.477	25.703	0.091507	-0.02164	5.9618E-05	NaN	0.52476	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20513	+		7382	11549	4955	4992							0.05909003816191216
IFIPSSIAF	9	Unmodified	_IFIPSSIAF_					0	0	0		ENSG00000198189|ENST00000358290|HSD17B11;ENST00000502576.5_1_4:88258430-88295551:-|nuORF;ENST00000508163.1_1_4:88239551-88261757:-|nuORF	ENSG00000198189|ENST00000358290|HSD17B11	ENSG00000198189|ENST00000358290|HSD17B11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7835388183594	2	497.784036	993.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.639	1	87.669	87.169	88.169	0.030037								0	0	0	0.16627	1	21627	21627		23.148	5.0134	1				7383	5351	4956	4993	10113	10113					0.056484300797023934
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.8536376953125	2	636.852981	1271.69141	0.51301	0.00032671	-0.19772	-0.00012592	0.31529	0.00020079	636.8527581517995	67.097	0.80239	67.097	66.84	67.642	0					76	29	4	0	0	0	0.010985	2	15495	15495;15544		75.571	46.489	1	579630			7384	2913	4957	4994	10114;10115	10114					0.06643133608326934
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.8533935546875	2	636.852981	1271.69141	0.66712	0.00042486	-0.43565	-0.00027745	0.23147	0.00014741	636.8526315956009	67.064	0.79466	67.129	66.871	67.666	0.065063					67	27	4	0	0	0	0.020147	2	15337	15337;15388		67.838	40.209	1	445640			7385	2913	4957	4994	10116;10117	10116					0.06643133608326934
IFISPFAIF	9	Unmodified	_IFISPFAIF_					0	0	0			REV__ENST00000354300.4_1_12:110971964-110972120:-|nuORF	REV__ENST00000354300.4_1_12:110971964-110972120:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7735595703125	2	527.802229	1053.5899	0.5788	0.00030549	-4.393	-0.0023186	-3.8142	-0.0020131	527.799633087613	54.696	0.31468	54.761	54.693	55.007	0.065128					17	13	2	0	0	0	0.164	1	11599	11599		30.225	0	1	80327	+		7386	11491	4958	4995	10118	10118					0.06525306976413958
IFIWVMMF	8	Unmodified	_IFIWVMMF_					0	0	0			REV__ENST00000460469.1_1_3:160952958-160956540:+|nuORF	REV__ENST00000460469.1_1_3:160952958-160956540:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2470092773438	2	543.779385	1085.54422	0.41467	0.00022549	0.078628	4.2756E-05	0.49329	0.00026824	543.7804781007575	91.838	0.5397	91.874	91.746	92.286	0.03653					19	18	2	0	0	0	0.35256	1	22872	22872		17.087	0	1	46379	+		7387	11957	4959	4996	10119	10119					0.004866221981728813
IFKPPDPDNTF	11	Unmodified	_IFKPPDPDNTF_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.8211059570312	2	645.821878	1289.6292	0.24779	0.00016003	-0.02663	-1.7198E-05	0.22116	0.00014283	645.8218046684211	57.019	0.40958	57.019	56.831	57.241	0					20	14	2	0	0	0	0.34492	1	12468	12468		12.873	2.7987	1	102330			7388	4117	4960	4997	10120	10120					-0.004026375306921182
IFLEESLSF	9	Unmodified	_IFLEESLSF_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.781982421875	2	542.78169	1083.54883	0.11047	5.9962E-05	0.10455	5.675E-05	0.21503	0.00011671	542.7817195465612	86.6	0.37547	86.6	86.408	86.784	0					25	13	3	0	0	0	0.14331	1	21466	21466		36.127	20.28	1	336180			7389	1040	4961	4998	10121	10121					0.010395011462833281
IFLEESLSF	9	Unmodified	_IFLEESLSF_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.78169	1083.54883	0.32213	0.00017485	0.22044	0.00011965	0.54257	0.0002945	542.7816433091085	86.593	0.44658	86.621	86.362	86.808	0.027573	0.010502	6.8092E-05	NaN	108	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241470			7390	1040	4961	4998							0.010395011462833281
IFLEIKADIGF	11	Unmodified	_IFLEIKADIGF_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.896240234375	3	422.576185	1264.70673	-0.44778	-0.00018922	0.96483	0.00040771	0.51705	0.00021849	422.57647865772935	42.166	0.65678	42.256	41.994	42.65	0.089764					41	24	2	0	0	0	0.31072	1	7898	7898		3.0723	0	1	49190			7391	4254	4962	4999	10122	10122					0.0849600040551195
IFLLCFMNN	9	Unmodified	_IFLLCFMNN_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.773193359375	2	557.774831	1113.53511	0.60134	0.00033541	-1.2971	-0.00072348	-0.69573	-0.00038806	557.7736122812757	53.273	0.41619	53.338	53.084	53.5	0.065426					42	20	3	0	0	0	0.28587	1	11146	11146		8.5933	2.3875	1	116950			7392	7613	4963	5000	10123	10123					-0.017117711581477124
IFLLTNNNLLL	11	Unmodified	_IFLLTNNNLLL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3873291015625	2	644.387188	1286.75982	0.51953	0.00033478	-2.2208	-0.0014311	-1.7013	-0.0010963	644.3847463173679	98.201	0.46535	98.201	98.027	98.492	0					34	24	2	0	0	0	0.3051	1	25003	25003		17.443	8.9983	1	192490			7393	2405	4964	5001	10124	10124					0.12791378188194358
IFLLTNNNLLL	11	Unmodified	_IFLLTNNNLLL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3875732421875	2	644.387188	1286.75982	0.45181	0.00029114	-0.93071	-0.00059974	-0.4789	-0.0003086	644.3866435391186	98.136	0.3589	98.178	97.983	98.342	0.041931					34	19	2	0	0	0	0.17917	1	24837	24837		33.445	18.196	1	143840			7394	2405	4964	5001	10125	10125					0.12791378188194358
IFLMWPLF	8	Unmodified	_IFLMWPLF_					0	0	0			REV__ENST00000511525.1_1_5:43446326-43483989:-|nuORF	REV__ENST00000511525.1_1_5:43446326-43483989:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.79345703125	2	533.793349	1065.57215	0.76132	0.00040639	-0.74462	-0.00039747	0.016699	8.914E-06	533.7932829891228	92.782	0.83366	92.82	92.586	93.42	0.037369					61	33	4	0	0	0	0.32787	1	23213	23213		32.454	2.2288	1	420790	+		7395	9658	4965	5002	10126	10126					0.04198268449908937
IFLNKTFQW	9	Unmodified	_IFLNKTFQW_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8271484375	2	598.826766	1195.63898	0.50897	0.00030478	0.092395	5.5328E-05	0.60136	0.00036011	598.8267978268389	69.462	0.87352	69.462	69.269	70.142	0					69	30	4	0	0	0	0.00090591	2	16266	16222;16266		125.04	56.957	1	747550			7396	2948	4966	5003	10127;10128	10128					0.04898595265376571
IFLNKTFQW	9	Unmodified	_IFLNKTFQW_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8269653320312	2	598.826766	1195.63898	0.21003	0.00012577	0.35303	0.0002114	0.56306	0.00033717	599.3284036072894	69.4	0.70836	69.462	69.233	69.942	0.062126					58	25	3	0	0	0	0.0039507	4	16087	16045;16087;16134;16186		103.82	48.395	1	854210			7397	2948	4966	5003	10129;10130;10131;10132	10130					0.04898595265376571
IFLPILRTGF	10	Unmodified	_IFLPILRTGF_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3621826171875	2	588.860609	1175.70667	0.63082	0.00037146	-0.41763	-0.00024593	0.21318	0.00012553	588.8603919835455	83.386	0.49249	83.386	83.141	83.634	0					26	16	2	0	0	0	0.31565	1	20453	20453		8.1555	0	1	201440			7398	4165	4967	5004	10133	10133					0.12584045196172156
IFLPILRTGF	10	Unmodified	_IFLPILRTGF_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8612060546875	2	588.860609	1175.70667	0.50267	0.000296	-0.20096	-0.00011834	0.30171	0.00017766	588.8605491790064	83.367	0.67216	83.389	83.137	83.809	0.021751					42	23	3	0	0	0	0.36006	1	20355	20355		16.149	0.30192	1	174050			7399	4165	4967	5004	10134	10134					0.12584045196172156
IFLSQPILL	9	Unmodified	_IFLSQPILL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3287353515625	2	522.328611	1042.64267	0.36115	0.00018864	-0.21207	-0.00011077	0.14907	7.7865E-05	522.3283563901973	91.132	0.72362	91.132	90.808	91.531	0					53	25	4	0	0	0	0.02293	1	22827	22827		56.177	0	1	564290			7400	5550	4968	5005	10135	10135					0.12305265039231017
IFLSQPILL	9	Unmodified	_IFLSQPILL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.3287353515625	2	522.328611	1042.64267	0.061289	3.2013E-05	0.10706	5.5918E-05	0.16834	8.7931E-05	522.3285655073174	91.038	0.73015	91.074	90.828	91.558	0.035446					57	25	3	0	0	0	0.0569	1	22654	22654		41.84	0	1	411980			7401	5550	4968	5005	10136	10136					0.12305265039231017
IFMNNRSF	8	Unmodified	_IFMNNRSF_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7532348632812	2	514.752744	1027.49094	0.4246	0.00021856	0.64012	0.0003295	1.0647	0.00054807	514.7528559462695	79.14	0.52959	79.14	78.982	79.511	0					29	17	3	0	0	0	0.53345	1	19200	19200		5.7604	1.0044	1	159590			7402	5703	4969	5006	10137	10137					-0.021710392601335116
IFNEIYDKREE	11	Unmodified	_IFNEIYDKREE_					0	0	0			REV__tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	REV__tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7496337890625	3	485.908663	1454.70416	0.36059	0.00017521	-1.6667	-0.00080988	-1.3061	-0.00063467	485.90799537520303	54.893	0.20218	54.958	54.887	55.089	0.065128					14	8	2	0	0	0	0.31099	1	11647	11647		1.0136	0.50762	1	55284	+		7403	13297	4970	5007	10138	10138					-0.005004997901096431
IFNNHSSS	8	Unmodified	_IFNNHSSS_					0	0	0			REV__ENST00000220763.9_1_8:98155435-98155573:+|nuORF	REV__ENST00000220763.9_1_8:98155435-98155573:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2094421386719	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.143	1	84.143	83.643	84.643	0								0	0	0	0.38822	1	20724	20724		2.5775	0.27475	1		+		7404	11180	4971	5008	10139	10139					-0.05213122210182064
IFNPVSKNF	9	Unmodified	_IFNPVSKNF_					0	0	0		ENST00000589391.5_1_2:179401165-179403504:+|nuORF;ENST00000415561.1_1_2:179402212-179403504:+|nuORF;ENST00000588244.5_1_2:179402120-179403504:+|nuORF;ENST00000419746.5_1_2:179402219-179403504:+|nuORF;ENST00000589434.5_1_2:179388144-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.791748046875	2	533.290017	1064.56548	0.60911	0.00032483	-3.3756	-0.0018002	-2.7665	-0.0014754	533.7887294244541	53.429	0.7285	53.494	53.411	54.14	0.06543					49	31	2	0	0	0	0.20358	1	11232	11232		18.146	3.3081	1	143130			7405	6416	4972	5009	10140	10140					0.03578046822894976
IFNRIRDTFSM	11	Unmodified	_IFNRIRDTFSM_					0	0	0			REV__ENSG00000173610|ENST00000286604|UGT2A1	REV__ENSG00000173610|ENST00000286604|UGT2A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.7232360839844	3	467.243211	1398.7078	0.71651	0.00033478	-3.3979	-0.0015877	-2.6814	-0.0012529	467.24149563861704	66.415	0.25635	66.415	66.223	66.48	0					14	9	2	0	0	0	0.31079	1	15275	15275		4.1166	0.52957	1	60360	+		7406	10328	4973	5010	10141	10141					0.024398915027404655
IFPHCGRK	8	Unmodified	_IFPHCGRK_					0	0	0		ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2581481933594	2	479.257997	956.501441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.823	1	27.905	27.405	28.405	0.082134								0	0	0	0.38822	1	3530	3530		0.79363	0	1				7407	5699	4974	5011	10142	10142					0.021449881849662233
IFPLSTLVI	9	Unmodified	_IFPLSTLVI_					0	0	0			REV__ENST00000539116.1_1_12:66000071-66000152:+|nuORF	REV__ENST00000539116.1_1_12:66000071-66000152:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.81549072265625	2	501.815336	1001.61612	0.32083	0.000161	0.0039401	1.9772E-06	0.32477	0.00016298	501.8153108280365	101.5	0.96711	101.5	100.97	101.94	0					181	63	4	0	0	0	0.0065046	3	26004	26004;26044;26081		77.984	0	1	3400600	+		7408	12396	4975	5012	10143;10144;10145	10143					0.11537576147907203
IFPQFLYQF	9	Unmodified	_IFPQFLYQF_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3135375976562	2	601.815867	1201.61718	0.44407	0.00026725	-0.03065	-1.8446E-05	0.41342	0.0002488	601.8166328728003	96.229	0.36229	96.229	95.936	96.299	0					29	18	2	0	0	0	0.32112	1	24353	24353		3.9444	0	1	128140			7409	732	4976	5013	10146	10146					0.024437905167815188
IFPQFLYQF	9	Unmodified	_IFPQFLYQF_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8157348632812	2	601.815867	1201.61718	0.46899	0.00028224	-0.79568	-0.00047885	-0.32669	-0.00019661	601.8160011090582	96.08	0.36437	96.12	95.891	96.256	0.039772					25	18	2	0	0	0	0.33704	1	24178	24178		1.8442	0	1	89908			7410	732	4976	5013	10147	10147					0.024437905167815188
IFQDVLLQF	9	Unmodified	_IFQDVLLQF_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8132934570312	2	561.813325	1121.6121	0.49434	0.00027772	-0.36444	-0.00020475	0.1299	7.2977E-05	561.8130865266302	93.943	0.46587	93.943	93.77	94.235	0					43	24	2	0	0	0	0.038996	1	23706	23706		45.74	9.2337	1	366000			7411	4987	4977	5014	10148	10148					0.05615486654187407
IFQDVLLQF	9	Unmodified	_IFQDVLLQF_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8133544921875	2	561.813325	1121.6121	0.47552	0.00026716	-0.41169	-0.00023129	0.063836	3.5864E-05	561.8130649116819	93.93	0.75568	93.968	93.767	94.523	0.038086					59	35	2	0	0	0	0.20162	1	23524	23524		18.373	3.1246	1	504270			7412	4987	4977	5014	10149	10149					0.05615486654187407
IFQQEQEGW	9	Unmodified	_IFQQEQEGW_					0	0	0		ENST00000522482.5_1_8:26151222-26212062:+|nuORF	ENST00000522482.5_1_8:26151222-26212062:+|nuORF	ENST00000522482.5_1_8:26151222-26212062:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.319580078125	2	582.769645	1163.52474	0.757	0.00044116	0.77067	0.00044912	1.5277	0.00089028	582.7694479122233	64.966	1.2779	64.966	64.575	65.853	0					65	46	2	0	0	0	0.22912	1	14921	14921		18.146	7.3224	1	125340			7413	6969	4978	5015	10150	10150					-0.05048339287372983
IFRRSLCMRSM	11	Unmodified	_IFRRSLCMRSM_					0	0	0			REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF	REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.57635498046875	3	467.24216	1398.70465	0.23992	0.0001121	-0.56094	-0.00026209	-0.32102	-0.00014999	467.2418260415099	65.167	0.98127	65.236	64.959	65.941	0.068916					96	38	3	0	0	0	0.40087	3	14764	14764;14813;14857		4.1166	0.52395	1	1335700	+		7414	12422	4979	5016	10151;10152;10153	10151					0.021246018527335764
IFRRSLCMRSM	11	Unmodified	_IFRRSLCMRSM_					0	0	0			REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF	REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	467.24216	1398.70465	0.57092	0.00026676	-1.0511	-0.00049112	-0.48019	-0.00022436	467.2416273781669	65.195	0.87994	65.195	64.973	65.853	0	-0.020375	-0.00024408	NaN	4.1166	98	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	891460	+		7415	12422	4979	5016							0.021246018527335764
IFRRSLCMRSM	11	Unmodified	_IFRRSLCMRSM_					0	0	0			REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF	REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	467.24216	1398.70465	0.23992	0.0001121	-0.56094	-0.00026209	-0.32102	-0.00014999	467.2418260415099	65.167	0.98127	65.236	64.959	65.941	0.068916	0.020375	0.000443	NaN	4.1166	96	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1335700	+		7416	12422	4979	5016							0.021246018527335764
IFSASDTPVIF	11	Unmodified	_IFSASDTPVIF_					0	0	0		nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8108520507812	2	598.813522	1195.61249	0.13159	7.8799E-05	-2.4489	-0.0014664	-2.3173	-0.0013876	598.8121158685215	59.57	0.45359	59.643	59.427	59.88	0.072338					36	17	3	0	0	0	0.35693	1	13126	13126		11.495	2.1116	1	394770			7417	1896	4980	5017	10154	10154					0.022508615833430667
IFSDASRLIF	10	Unmodified	_IFSDASRLIF_					0	0	0		ENSG00000154330|ENST00000396396|PGM5;ENST00000496758.1_1_9:71114067-71144569:+|nuORF	ENSG00000154330|ENST00000396396|PGM5	ENSG00000154330|ENST00000396396|PGM5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8133544921875	2	584.821681	1167.62881	0.61901	0.00036201	0.048551	2.8394E-05	0.66756	0.0003904	584.8217210737753	83.042	0.52342	83.042	82.848	83.371	0					44	17	4	0	0	0	0.37232	1	20437	20437		14.838	4.0143	1	700440			7418	3556	4981	5018	10155	10155					0.05169987540125476
IFSDASRLIF	10	Unmodified	_IFSDASRLIF_					0	0	0		ENSG00000154330|ENST00000396396|PGM5;ENST00000496758.1_1_9:71114067-71144569:+|nuORF	ENSG00000154330|ENST00000396396|PGM5	ENSG00000154330|ENST00000396396|PGM5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8133544921875	2	584.821681	1167.62881	0.63131	0.00036921	0.00052873	3.0921E-07	0.63184	0.00036951	584.821674226367	83.016	0.50999	83.037	82.877	83.387	0.021744					42	17	3	0	0	0	0.41688	1	20267	20267		10.074	2.7847	1	601680			7419	3556	4981	5018	10156	10156					0.05169987540125476
IFSIVYTMF	9	Unmodified	_IFSIVYTMF_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7902221679688	2	560.791004	1119.56745	0.1722	9.657E-05	-0.47867	-0.00026844	-0.30647	-0.00017187	560.7906593496596	21.883	0.33462	21.984	21.863	22.197	0.10178					54	34	2	0	0	0	0.3182	1	1861	1861		4.3292	0	1	36061	+		7420	9394	4982	5019	10157	10157					0.012453395164811809
IFSIVYTMF	9	Unmodified	_IFSIVYTMF_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	560.791004	1119.56745	-0.21629	-0.00012129	-0.093262	-5.2301E-05	-0.30955	-0.00017359	560.7909095632863	22.049	0.37237	22.049	21.918	22.291	0	0.032232	0.00016767	NaN	4.3292	57	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26684	+		7421	9394	4982	5019							0.012453395164811809
IFSIVYTMF	9	Unmodified	_IFSIVYTMF_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	560.791004	1119.56745	0.1722	9.657E-05	-0.47867	-0.00026844	-0.30647	-0.00017187	560.7906593496596	21.883	0.33462	21.984	21.863	22.197	0.10178	-0.032232	-0.0002646	NaN	4.3292	54	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36061	+		7422	9394	4982	5019							0.012453395164811809
IFSKIVSLF	9	Unmodified	_IFSKIVSLF_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.3206176757812	2	527.320786	1052.62702	0.39462	0.00020809	0.1323	6.9767E-05	0.52693	0.00027786	527.3207321249281	75.477	0.34288	75.477	75.268	75.611	0					29	12	3	0	0	0	0.020768	2	18056	18056;18102		57.722	3.8892	1	343680			7423	2492	4983	5020	10158;10159	10158					0.10280978522177975
IFSKIVSLF	9	Unmodified	_IFSKIVSLF_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.3212280273438	2	527.320786	1052.62702	0.31751	0.00016743	0.4666	0.00024605	0.78411	0.00041348	527.3209077973306	75.531	0.46906	75.575	75.235	75.704	0.044044					33	16	3	0	0	0	0.0047429	2	17899	17899;17944		83.429	11.506	1	324500			7424	2492	4983	5020	10160;10161	10160					0.10280978522177975
IFSNVRINL	9	Unmodified	_IFSNVRINL_					0	0	0		nc|ENSG00000105974|Q03135-2|CAV1;ENSG00000105974|ENST00000341049|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.3152465820312	2	538.316566	1074.61858	0.37257	0.00020056	-0.15252	-8.2106E-05	0.22005	0.00011845	538.3163323024946	61.949	0.3592	61.949	61.816	62.175	0					24	14	2	0	0	0	0.015341	1	13963	13963		61.602	23.628	1	175960			7425	1497	4984	5021	10162	10162					0.0842542460554796
IFSNVRINL	9	Unmodified	_IFSNVRINL_					0	0	0		nc|ENSG00000105974|Q03135-2|CAV1;ENSG00000105974|ENST00000341049|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.16259765625	2	538.316566	1074.61858	0.49798	0.00026807	-0.33742	-0.00018164	0.16056	8.6431E-05	538.3162997415922	61.802	0.44548	61.876	61.73	62.175	0.073421					29	21	2	0	0	0	0.18151	1	13798	13798		29.841	3.5724	1	169120			7426	1497	4984	5021	10163	10163					0.0842542460554796
IFSPVFNFF	9	Unmodified	_IFSPVFNFF_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.28955078125	2	559.289485	1116.56442	0.30203	0.00016892	-0.061528	-3.4412E-05	0.24051	0.00013451	559.2893856913694	103.3	0.49495	103.3	103.03	103.52	0					92	36	4	0	0	0	0.0045534	4	26537	26491;26500;26509;26537		88.954	60.467	1	253990			7427	2866	4985	5022	10164;10165;10166;10167	10167					0.010798324540019166
IFSPVFNFF	9	Unmodified	_IFSPVFNFF_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2896728515625	2	559.289485	1116.56442	0.54828	0.00030665	-0.22635	-0.0001266	0.32193	0.00018005	559.2892158092053	103.2	0.57639	103.24	103.04	103.62	0.040909					130	57	4	0	0	0	0.006264	3	26349	26305;26313;26349		78.728	54.054	1	459530			7428	2866	4985	5022	10168;10169;10170	10170					0.010798324540019166
IFSPVFNFF	9	Unmodified	_IFSPVFNFF_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2898559570312	2	559.289485	1116.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.95	1	103.98	103.48	104.48	0.03791								0	0	0	0.28631	1	26564	26564		1.8442	0	1				7429	2866	4985	5022	10171	10171					0.010798324540019166
IFSQRLSLF	9	Unmodified	_IFSQRLSLF_					0	0	0		tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8178100585938	2	555.818941	1109.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.94	1	105.94	105.44	106.44	0								0	0	0	0.26747	1	27304	27304		5.7319	0	1				7430	13715	4986	5023	10172	10172					0.0729030874831551
IFSSSNKLTW	10	Unmodified	_IFSSSNKLTW_					0	0	0			REV__ENST00000593393.1_1_19:58918335-58918641:-|nuORF	REV__ENST00000593393.1_1_19:58918335-58918641:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.8114624023438	2	591.811313	1181.60807	0.64309	0.00038059	0.36512	0.00021608	1.0082	0.00059667	591.8111942961995	70.603	1.1077	70.663	70.332	71.439	0.060562					88	41	3	0	0	0	0.23357	1	16462	16462		29.841	0	1	1122000	+		7431	12596	4987	5024	10173	10173					0.02453397160456916
IFTAPIFSE	9	Unmodified	_IFTAPIFSE_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7894287109375	2	512.771126	1023.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.495	1	94.533	94.033	95.033	0.038086								0	0	0	0.19992	1	23712	23712		18.135	1.1927	1				7432	3594	4988	5025	10174	10174					0.016875358374250027
IFTARLYYF	9	Unmodified	_IFTARLYYF_					0	0	0		ENSG00000244509|ENST00000361441|APOBEC3C;ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000244509|ENST00000361441|APOBEC3C	ENSG00000244509|ENST00000361441|APOBEC3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3213500976562	2	597.321317	1192.62808	0.31483	0.00018805	-0.35741	-0.00021349	-0.042586	-2.5438E-05	597.320947284659	71.24	0.86916	71.24	70.964	71.834	0					65	29	3	0	0	0	0.031665	2	16765	16765;16820		49.933	28.186	1	356230			7433	2395	4989	5026	10175;10176	10175					0.03947192891064333
IFTARLYYF	9	Unmodified	_IFTARLYYF_					0	0	0		ENSG00000244509|ENST00000361441|APOBEC3C;ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000244509|ENST00000361441|APOBEC3C	ENSG00000244509|ENST00000361441|APOBEC3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3212890625	2	597.321317	1192.62808	0.32205	0.00019237	-0.22873	-0.00013663	0.093323	5.5744E-05	597.3211703707209	71.134	0.68123	71.193	71.026	71.707	0.058586					57	24	4	0	0	0	0.0072241	2	16624	16580;16624		75.761	44.492	1	334910			7434	2395	4989	5026	10177;10178	10178					0.03947192891064333
IFTDIFHYL	9	Unmodified	_IFTDIFHYL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3566284179688	2	584.8055	1167.59645	0.58709	0.00034333	-0.97913	-0.0005726	-0.39204	-0.00022927	584.8046057502277	87.579	0.48038	87.579	87.374	87.855	0					24	17	2	0	0	0	0.10508	1	21778	21778		34.102	14.845	1	153150			7435	1829	4990	5027	10179	10179					0.019352001371316874
IFTDLSSRF	9	Unmodified	_IFTDLSSRF_					0	0	0		XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant;ENSG00000079246|ENST00000392132|XRCC5	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2853393554688	2	543.284931	1084.55531	0.39518	0.00021469	0.25071	0.00013621	0.64589	0.0003509	543.2850943027329	61.099	0.44722	61.099	60.971	61.418	0					20	15	2	0	0	0	0.026809	1	13730	13730		53.404	13.454	1	129780			7436	879	4991	5028	10180	10180					0.016414390976706272
IFTDVALKF	9	Unmodified	_IFTDVALKF_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.3026123046875	2	527.302593	1052.59063	0.50656	0.00026711	-0.13546	-7.1429E-05	0.3711	0.00019568	527.302379703794	70.495	0.72963	70.495	70.271	71.001	0					59	26	3	0	0	0	7.6155E-09	3	16574	16526;16574;16630		163.04	119.18	1	788960			7437	2294	4992	5029	10181;10182;10183	10182					0.06644101625465737
IFTDVALKF	9	Unmodified	_IFTDVALKF_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.3029174804688	2	527.302593	1052.59063	0.49401	0.00026049	-0.31582	-0.00016653	0.17819	9.3958E-05	527.302307691337	70.404	0.58479	70.464	70.279	70.864	0.060562					53	22	3	0	0	0	0.00087611	3	16403	16353;16403;16446		125.53	83.69	1	611690			7438	2294	4992	5029	10184;10185;10186	10185					0.06644101625465737
IFTEETYTF	9	Unmodified	_IFTEETYTF_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.3098754882812	2	575.76878	1149.52301	0.42487	0.00024463	0.19188	0.00011048	0.61675	0.00035511	575.7690334765409	71.198	0.29231	71.198	71.037	71.329	0					22	9	3	0	0	0	0.20194	1	16773	16773		24.021	9.1823	1	78145			7439	2684	4993	5030	10187	10187					-0.045773930960194775
IFTSKGYAGF	10	Unmodified	_IFTSKGYAGF_					0	0	0			REV__tr|U7T8G3|U7T8G3_FUSNUCore-binding(CB)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00045PE=4SV=1	REV__tr|U7T8G3|U7T8G3_FUSNUCore-binding(CB)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00045PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7825927734375	2	545.782025	1089.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.36	1	108.36	107.86	108.86	0								0	0	0	0.3332	1	27944	27944		8.1555	0.8663	1		+		7440	13321	4994	5031	10188	10188					0.008303405860033308
IFVARLYYF	9	Unmodified	_IFVARLYYF_					0	0	0		APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant;ENSG00000239713|ENST00000407997|APOBEC3G	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.3314208984375	2	596.331685	1190.64882	0.36675	0.00021871	0.055045	3.2825E-05	0.4218	0.00025153	596.3313521162171	74.812	0.47924	74.812	74.579	75.058	0					35	17	3	0	0	0	0.1478	1	17863	17863		34.102	21.06	1	197840			7441	45	4995	5032	10189	10189					0.06111783270739579
IFVARLYYF	9	Unmodified	_IFVARLYYF_					0	0	0		APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant;ENSG00000239713|ENST00000407997|APOBEC3G	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.3314208984375	2	596.331685	1190.64882	0.20803	0.00012406	0.42334	0.00025245	0.63137	0.00037651	596.3318092191384	74.741	0.46755	74.79	74.593	75.061	0.048546					26	16	2	0	0	0	0.092418	1	17719	17719		34.102	18.255	1	145790			7442	45	4995	5032	10190	10190					0.06111783270739579
IFVFTTKMLPL	11	Unmodified	_IFVFTTKMLPL_					0	0	0			REV__ENST00000316902.11_1_14:23652558-23652753:-|nuORF	REV__ENST00000316902.11_1_14:23652558-23652753:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2576904296875	3	437.257799	1308.75157	-0.081953	-3.5835E-05	-0.84025	-0.0003674	-0.9222	-0.00040324	437.257423440569	90.077	0.54422	90.111	90.035	90.58	0.034065					39	22	2	0	0	0	0.41359	1	22476	22476		1.2148	0.10508	1	719580	+		7443	11385	4996	5033	10191	10191					0.10954107947213743
IFVYENPISL	10	Unmodified	_IFVYENPISL_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8238525390625	2	597.823889	1193.63323	0.042256	2.5262E-05	-0.019707	-1.1781E-05	0.022549	1.348E-05	597.8234560450222	71.89	0.56	71.946	71.705	72.265	0.055931					39	18	3	0	0	0	0.43214	1	16864	16864		8.1555	0	1	234650			7444	353	4997	5034	10192	10192					0.044154519630410505
IFVYENPISL	10	Unmodified	_IFVYENPISL_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	597.823889	1193.63323	0.024312	1.4534E-05	0.038732	2.3155E-05	0.063044	3.7689E-05	597.8236185434247	72.007	0.42407	72.007	71.834	72.258	0	0.030463	3.0251E-05	NaN	8.1555	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389780			7445	353	4997	5034							0.044154519630410505
IFWEDEIN	8	Unmodified	_IFWEDEIN_					0	0	0			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2479858398438	2	533.248015	1064.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.715	1	66.715	66.215	67.215	0								0	0	0	0.38275	1	15409	15409		23.148	0	1		+		7446	8924	4998	5035	10193	10193					-0.0481852906466429
IFWGPQLVI	9	Unmodified	_IFWGPQLVI_					0	0	0		ENST00000382151.6_1_22:32024091-32024169:-|nuORF	ENST00000382151.6_1_22:32024091-32024169:-|nuORF	ENST00000382151.6_1_22:32024091-32024169:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.326171875	2	536.813128	1071.6117	0.56388	0.0003027	-0.24758	-0.0001329	0.31631	0.0001698	536.8129178050993	99.307	0.57668	99.307	98.909	99.485	0					95	39	3	0	0	0	0.2446	1	25318	25318		11.64	0	1	306970			7447	6300	4999	5036	10194	10194					0.07876111724976909
IFWGPQLVI	9	Unmodified	_IFWGPQLVI_					0	0	0		ENST00000382151.6_1_22:32024091-32024169:-|nuORF	ENST00000382151.6_1_22:32024091-32024169:-|nuORF	ENST00000382151.6_1_22:32024091-32024169:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	536.813128	1071.6117	0.74672	0.00040085	-0.52408	-0.00028133	0.22264	0.00011952	536.8127914852315	99.15	0.69095	99.192	98.879	99.57	0.042839	-0.057145	-0.00011457	NaN	11.64	106	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274740			7448	6300	4999	5036							0.07876111724976909
IFYQGFSDLL	10	Unmodified	_IFYQGFSDLL_					0	0	0			REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5	REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.8076782226562	2	601.808239	1201.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.941	1	75.941	75.441	76.441	0								0	0	0	0.13659	1	18222	18222		39.957	0.0076237	1		+		7449	7813	5000	5037	10195	10195					0.009188789289510169
IFYQGFSDLL	10	Unmodified	_IFYQGFSDLL_					0	0	0			REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5	REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3092041015625	2	601.808239	1201.60193	0.49047	0.00029517	0.36935	0.00022228	0.85982	0.00051745	601.807955648784	75.817	1.7447	75.861	75.085	76.83	0.044037					130	83	2	0	0	0	0.21218	1	18070	18070		32.305	1.6689	1	2895000	+		7450	7813	5000	5037	10196	10196					0.009188789289510169
IFYRDVLMF	9	Unmodified	_IFYRDVLMF_					0	0	0		ENST00000529428.5_1_16:30291089-30291220:-|nuORF	ENST00000529428.5_1_16:30291089-30291220:-|nuORF	ENST00000529428.5_1_16:30291089-30291220:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.814453125	2	602.315177	1202.6158	0.42927	0.00025856	-2.4919	-0.0015009	-2.0627	-0.0012424	602.815577975015	95.255	0.62544	95.255	94.779	95.405	0					44	26	2	0	0	0	0.27929	1	23960	23960		9.3831	1.7742	1	61420			7451	7017	5001	5038	10197	10197					0.02259833156381319
IFYRDVLMF	9	Unmodified	_IFYRDVLMF_					0	0	0		ENST00000529428.5_1_16:30291089-30291220:-|nuORF	ENST00000529428.5_1_16:30291089-30291220:-|nuORF	ENST00000529428.5_1_16:30291089-30291220:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3175659179688	2	602.315177	1202.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.305	1	96.305	95.805	96.805	0								0	0	0	0.24978	1	24423	24423		9.3831	1.7742	1				7452	7017	5001	5038	10198	10198					0.02259833156381319
IGAESGVELL	10	Unmodified	_IGAESGVELL_					0	0	0			REV__ENST00000477801.1_1_1:153363297-153363519:-|nuORF	REV__ENST00000477801.1_1_1:153363297-153363519:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2709045410156	2	494.27149	986.528426	0.57866	0.00028602	0.148	7.3152E-05	0.72666	0.00035917	494.27156979914	70.231	0.31305	70.291	70.194	70.507	0.060562					18	11	2	0	0	0	0.35104	1	16348	16348		17.113	0	1	113430	+		7453	12060	5002	5039	10199	10199					0.03462330486490828
IGAESGVELL	10	Unmodified	_IGAESGVELL_					0	0	0			REV__ENST00000477801.1_1_1:153363297-153363519:-|nuORF	REV__ENST00000477801.1_1_1:153363297-153363519:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7640380859375	2	494.27149	986.528426	0.57866	0.00028602	0.148	7.3152E-05	0.72666	0.00035917	494.27156979914	70.231	0.31305	70.291	70.194	70.507	0.060562					18	11	2	0	0	0	0.31219	1	16330	16330		17.113	0	1	113430	+		7454	12060	5002	5039	10200	10200					0.03462330486490828
IGAPSFVSSTM	11	Unmodified	_IGAPSFVSSTM_					0	0	0			REV__NR3C2|p.C205F|1|0.24|ENSG00000151623|chr4:148436247-148436247|C/A|missense_variant	REV__NR3C2|p.C205F|1|0.24|ENSG00000151623|chr4:148436247-148436247|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.8350830078125	2	548.7708	1095.52705	0.38478	0.00021116	-1.0748	-0.00058982	-0.69002	-0.00037866	548.7700204035863	96.124	0.55091	96.124	95.872	96.423	0					93	29	5	0	0	0	0.38315	1	24307	24307		8.1555	1.4324	1	773500	+		7455	12935	5003	5040	10201	10201					-0.01689626873940142
IGASCRVCSL	10	Unmodified	_IGASCRVCSL_					0	0	0			REV__ENST00000425895.5_1_22:25016477-25016929:+|nuORF	REV__ENST00000425895.5_1_22:25016477-25016929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7525329589844	2	504.751887	1007.48922	0.47413	0.00023932	1.1003	0.00055538	1.5744	0.00079469	504.75227297305514	54.917	0.61187	54.917	54.706	55.318	0					55	22	4	0	0	0	0.30966	1	11849	11849		21.537	0.66577	1	539440	+		7456	11831	5004	5041	10202	10202					-0.01422416340392374
IGCCLIVAGTF	11	Unmodified	_IGCCLIVAGTF_					0	0	0		tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1	tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1	tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7799682617188	2	548.780113	1095.54567	0.46659	0.00025605	0.56169	0.00030824	1.0283	0.0005643	548.7802701568668	100.54	0.49091	100.54	100.31	100.8	0					54	29	3	0	0	0	0.38315	1	25662	25662		8.1555	1.4324	1	156030			7457	13547	5005	5042	10203	10203					0.0017221149626038823
IGCFSAFYFS	10	Unmodified	_IGCFSAFYFS_					0	0	0		ENST00000414441.5_1_7:100026594-100028246:+|nuORF	ENST00000414441.5_1_7:100026594-100028246:+|nuORF	ENST00000414441.5_1_7:100026594-100028246:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2344360351562	2	571.254785	1140.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.57	1	39.659	39.159	40.159	0.088562								0	0	0	0.33738	1	7037	7037		3.2813	0.28607	1				7458	6412	5006	5043	10204	10204					-0.06960994557084632
IGEGEFLVL	9	Unmodified	_IGEGEFLVL_					0	0	0		ENSG00000125841|ENST00000382285|NRSN2	ENSG00000125841|ENST00000382285|NRSN2	ENSG00000125841|ENST00000382285|NRSN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7718811035156	2	488.771126	975.527698	0.55077	0.0002692	-0.0093158	-4.5533E-06	0.54146	0.00026465	488.7710166981736	82.054	0.61771	82.054	81.836	82.454	0					46	21	3	0	0	0	0.21398	1	20176	20176		16.942	0	1	429090			7459	2315	5007	5044	10205	10205					0.038955358374209936
IGFNTPWF	8	Unmodified	_IGFNTPWF_					0	0	0			REV__nc|ENSG00000132170|P37231-3|PPARG	REV__nc|ENSG00000132170|P37231-3|PPARG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2307434082031	2	491.245078	980.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.417	1	44.506	44.006	45.006	0.088428								0	0	0	0.38822	1	8498	8498		12.532	0.89125	1		+		7460	9105	5008	5045	10206	10206					-0.015415827856713804
IGINENKNY	9	Unmodified	_IGINENKNY_					0	0	0			REV__tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	REV__tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3207397460938	2	532.772188	1063.52982	0.4303	0.00022925	-0.17252	-9.1912E-05	0.25779	0.00013734	533.2722490320906	107.24	0.065338	107.27	107.24	107.31	0.025711					6	4	2	0	0	0	0.25875	1	27476	27476		1.8442	0	1	30606	+		7461	13201	5009	5046	10207	10207					0.0005996457523451681
IGMEKFFNI	9	Oxidation (M)	_IGM(Oxidation (M))EKFFNI_		IGM(1)EKFFNI		IGM(61)EKFFNI	0	0	1		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L;RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion	ENSG00000100714|ENST00000652337|MTHFD1;RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7835693359375	2	557.78371	1113.55287	0.47692	0.00026602	-0.093081	-5.1919E-05	0.38384	0.0002141	557.783512187723	61.297	0.28341	61.297	61.135	61.418	0					21	9	3	0	0	0	0.016057	1	13747	13747		61.09	37.3	1	246890			7462	1215;13350	5010	5047	10208	10208		69			0.0006326736834125768
IGMEKFFNI	9	Oxidation (M)	_IGM(Oxidation (M))EKFFNI_		IGM(1)EKFFNI		IGM(48)EKFFNI	0	0	1		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L;RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion	ENSG00000100714|ENST00000652337|MTHFD1;RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2976684570312	2	557.78371	1113.55287	0.63182	0.00035242	-0.56513	-0.00031522	0.066689	3.7198E-05	557.7832039278298	63.567	0.79052	63.638	63.264	64.055	0.071018					54	28	3	0	0	0	0.034744	1	14340	14340		47.732	21.464	1	245290			7463	1215;13350	5010	5047	10209	10209		69			0.0006326736834125768
IGMEKFFNI	9	Oxidation (M)	_IGM(Oxidation (M))EKFFNI_		IGM(1)EKFFNI		IGM(50)EKFFNI	0	0	1		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L;RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion	ENSG00000100714|ENST00000652337|MTHFD1;RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7837524414062	2	557.78371	1113.55287	0.47093	0.00026268	-0.051591	-2.8777E-05	0.41934	0.0002339	557.783449558613	61.222	0.37192	61.295	61.081	61.453	0.073421					25	12	3	0	0	0	0.092521	1	13590	13590		49.527	18.891	1	245750			7464	1215;13350	5010	5047	10210	10210		69			0.0006326736834125768
IGNMGQTM	8	Unmodified	_IGNMGQTM_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.19140625	2	426.191131	850.367709	0.046884	1.9981E-05	0.8382	0.00035723	0.88508	0.00037721	426.19142354962577	86.672	0.47408	86.7	86.508	86.982	0.027573					39	21	3	0	0	0	0.53817	1	21402	21402		2.5775	0	1	548470			7465	951	5011	5048	10211	10211					-0.06346038702906753
IGSIVSLTL	9	Unmodified	_IGSIVSLTL_					0	0	0		ENST00000321250.12_1_8:29965226-29965448:+|nuORF	ENST00000321250.12_1_8:29965226-29965448:+|nuORF	ENST00000321250.12_1_8:29965226-29965448:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.781494140625	2	451.781493	901.548434	0.19335	8.7354E-05	-0.24232	-0.00010947	-0.048964	-2.2121E-05	451.7813354623824	82.86	0.48841	82.882	82.705	83.194	0.021744					28	16	2	0	0	0	0.26684	1	20217	20217		10.824	3.5347	1	94174			7466	6031	5012	5049	10212	10212					0.09372126217078858
IGTDIVGIL	9	Unmodified	_IGTDIVGIL_					0	0	0			REV__ENST00000534281.1_1_11:10536572-10536629:-|nuORF	REV__ENST00000534281.1_1_11:10536572-10536629:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.77362060546875	2	450.773668	899.532783	0.47678	0.00021492	-0.25922	-0.00011685	0.21756	9.8069E-05	450.7734388972392	80.121	0.94225	80.148	79.911	80.853	0.026192					76	33	3	0	0	0	0.026569	2	19317	19317;19416		53.576	2.7205	1	1464600	+		7467	12371	5013	5050	10213;10214	10213					0.07899839700064604
IGYIELFNF	9	Unmodified	_IGYIELFNF_					0	0	0			REV__tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1	REV__tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.292236328125	2	558.292225	1114.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.92	1	104.95	104.45	105.45	0.034004								0	0	0	0.27613	1	26836	26836		3.9444	0.66309	1		+		7468	13215	5014	5051	10215	10215					0.01719511245778449
IGYIELFNF	9	Unmodified	_IGYIELFNF_					0	0	0			REV__tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1	REV__tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.292236328125	2	558.292225	1114.5699	0.52998	0.00029588	-0.59956	-0.00033473	-0.06958	-3.8846E-05	558.2919991628684	104.99	0.16688	105.03	104.92	105.09	0.034004					24	17	2	0	0	0	0.25644	1	26836	26836		3.9444	0.66309	1	60955	+		7469	13215	5014	5051	10216	10216					0.01719511245778449
IHDIVPLPLF	10	Unmodified	_IHDIVPLPLF_					0	0	0			REV__YARS2|p.E328V|1|0.21|ENSG00000139131|chr12:32750839-32750839|T/A|missense_variant	REV__YARS2|p.E328V|1|0.21|ENSG00000139131|chr12:32750839-32750839|T/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.3447265625	2	582.344792	1162.67503	0.44511	0.00025921	-0.11049	-6.4343E-05	0.33463	0.00019487	582.3447370291939	58.448	2.2536	58.518	58.348	60.602	0.070477					190	84	5	0	0	0	0.43972	1	13196	13196		6.7232	0.51738	1	9282600	+		7470	13335	5015	5052	10217	10217					0.10020052442200722
IHELYGDEI	9	Unmodified	_IHELYGDEI_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7669677734375	2	544.766571	1087.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.171	1	76.21	75.71	76.71	0.03923								0	0	0	0.23884	1	18136	18136		11.64	0.84079	1				7471	4254	5016	5053	10218	10218					-0.021668575189096373
IHFLAWFL	8	Unmodified	_IHFLAWFL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF	nc|ENSG00000179869|Q86UQ4|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF	nc|ENSG00000179869|Q86UQ4|ABCA13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7852783203125	2	523.794738	1045.57492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.45	1	53.516	53.016	54.016	0.06543								0	0	0	0.38822	1	11227	11227		11.114	0	1				7472	4791;6772	5017	5054	10219	10219					0.05395859899090283
IHGVTAGR	8	Unmodified	_IHGVTAGR_					0	0	0		KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant	KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant	KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.7325439453125	2	405.732669	809.450785	-0.077697	-3.1524E-05	0.10054	4.0791E-05	0.022841	9.2673E-06	405.73258604790203	21.548	0.64685	21.548	21.391	22.038	0					126	60	3	0	0	0	0.46036	2	1871	1871;1904		18.135	1.1927	1	210130			7473	7372	5018	5055	10220;10221	10220					0.03843782131605167
IHGVTAGR	8	Unmodified	_IHGVTAGR_					0	0	0		KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant	KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant	KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.7325134277344	2	405.732669	809.450785	-0.12725	-5.1628E-05	0.14674	5.9538E-05	0.019495	7.9098E-06	405.73261871842715	21.347	0.8462	21.448	21.301	22.148	0.10178					156	88	3	0	0	0	0.46036	1	1729	1729		18.135	1.1927	1	215870			7474	7372	5018	5055	10222	10222					0.03843782131605167
IHLPHAPLF	9	Unmodified	_IHLPHAPLF_					0	0	0			REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.8031005859375	2	522.803094	1043.59164	0.31637	0.0001654	-0.14366	-7.5105E-05	0.17271	9.0295E-05	522.8030071365812	76.934	0.41814	76.934	76.756	77.175	0					37	14	3	0	0	0	0.11964	2	18575	18517;18575		28.173	13.592	1	350670	+		7475	10177	5019	5056	10223;10224	10224					0.07158360785001605
IHLPHAPLF	9	Unmodified	_IHLPHAPLF_					0	0	0			REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.8032836914062	2	522.803094	1043.59164	0.31333	0.00016381	-0.10771	-5.6311E-05	0.20562	0.0001075	522.8029502604303	76.935	0.38921	76.974	76.734	77.123	0.03923					35	13	3	0	0	0	0.11964	2	18352	18352;18406		28.173	13.592	1	431690	+		7476	10177	5019	5056	10225;10226	10225					0.07158360785001605
IHLPHAPLF	9	Unmodified	_IHLPHAPLF_					0	0	0			REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	522.803094	1043.59164	0.31637	0.0001654	-0.14366	-7.5105E-05	0.17271	9.0295E-05	522.8030071365812	76.934	0.41814	76.934	76.756	77.175	0	-0.020146	-1.6018E-05	NaN	28.173	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350670	+		7477	10177	5019	5056							0.07158360785001605
IHLPHAPLF	9	Unmodified	_IHLPHAPLF_					0	0	0			REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	522.803094	1043.59164	0.31333	0.00016381	-0.10771	-5.6311E-05	0.20562	0.0001075	522.8029502604303	76.935	0.38921	76.974	76.734	77.123	0.03923	0.020146	2.1571E-05	NaN	28.173	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431690	+		7478	10177	5019	5056							0.07158360785001605
IHLSLARK	8	Unmodified	_IHLSLARK_					0	0	0			REV__ENST00000212355.8_1_1:92177969-92181824:-|nuORF	REV__ENST00000212355.8_1_1:92177969-92181824:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3008117675781	2	469.300719	936.586885	-0.17102	-8.0258E-05	0.13823	6.4872E-05	-0.032785	-1.5386E-05	469.3009832246689	109.49	0.17641	109.49	109.44	109.61	0					26	14	2	0	0	0	0.53858	1	28171	28171		2.3027	0	1	1151700	+		7479	11168	5020	5057	10227	10227					0.11605476642273516
IHLSLARK	8	Unmodified	_IHLSLARK_					0	0	0			REV__ENST00000212355.8_1_1:92177969-92181824:-|nuORF	REV__ENST00000212355.8_1_1:92177969-92181824:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.83135986328125	2	469.300719	936.586885	0.031636	1.4847E-05	0.090683	4.2557E-05	0.12232	5.7404E-05	469.300779908733	109.48	0.22324	109.5	109.44	109.66	0.019402					47	22	3	0	0	0	0.3576	1	28007	28007		5.2307	0	1	997960	+		7480	11168	5020	5057	10228	10228					0.11605476642273516
IHLSLARK	8	Unmodified	_IHLSLARK_					0	0	0			REV__ENST00000212355.8_1_1:92177969-92181824:-|nuORF	REV__ENST00000212355.8_1_1:92177969-92181824:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	469.300719	936.586885	-0.17102	-8.0258E-05	0.13823	6.4872E-05	-0.032785	-1.5386E-05	469.3009832246689	109.49	0.17641	109.49	109.44	109.61	0	-0.0068377	3.536E-05	NaN	5.2307	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1151700	+		7481	11168	5020	5057							0.11605476642273516
IHRQRRFQK	9	Unmodified	_IHRQRRFQK_					0	0	0		ENST00000446425.2_1_2:24199858-24205795:+|nuORF;ENST00000479859.1_1_2:24199858-24199963:+|nuORF	ENST00000446425.2_1_2:24199858-24205795:+|nuORF	ENST00000446425.2_1_2:24199858-24205795:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8781127929688	2	634.875979	1267.73741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.73	1	106.75	106.25	107.25	0.025711								0	0	0	0.2927	1	27329	27329		0.52476	0.12405	1				7482	6544	5021	5058	10229	10229					0.114246363537859
IHSGLEVLL	9	Unmodified	_IHSGLEVLL_					0	0	0		ENST00000585058.1_1_17:29850640-29851216:+|nuORF	ENST00000585058.1_1_17:29850640-29851216:+|nuORF	ENST00000585058.1_1_17:29850640-29851216:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7924499511719	2	490.792392	979.570232	0.36049	0.00017693	-0.073244	-3.5948E-05	0.28725	0.00014098	490.792234510063	68.078	1.0785	68.078	67.832	68.911	0					93	39	3	0	0	0	0.18364	3	15844	15793;15844;15888		20.454	0	1	781040			7483	7234	5022	5059	10230;10231;10232	10231					0.07962930965663872
IHSGLEVLL	9	Unmodified	_IHSGLEVLL_					0	0	0		ENST00000585058.1_1_17:29850640-29851216:+|nuORF	ENST00000585058.1_1_17:29850640-29851216:+|nuORF	ENST00000585058.1_1_17:29850640-29851216:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7925720214844	2	490.792392	979.570232	0.45429	0.00022296	-0.084831	-4.1634E-05	0.36946	0.00018133	490.79225170298963	68.082	0.92026	68.145	67.874	68.794	0.063499					77	34	3	0	0	0	0.18364	2	15671	15626;15671		20.454	0	1	727480			7484	7234	5022	5059	10233;10234	10234					0.07962930965663872
IHSYFSLIF	9	Unmodified	_IHSYFSLIF_					0	0	0		ENST00000501122.2_1_11:65204545-65204752:+|nuORF	ENST00000501122.2_1_11:65204545-65204752:+|nuORF	ENST00000501122.2_1_11:65204545-65204752:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.8007202148438	2	563.800217	1125.58588	0.24957	0.00014071	0.1768	9.9682E-05	0.42637	0.00024039	563.8001069259675	102.61	0.42704	102.61	102.43	102.85	0					39	29	2	0	0	0	0.26684	1	26335	26335		10.824	1.4408	1	82612			7485	6864	5023	5060	10235	10235					0.02811217482712891
IHSYFSLIF	9	Unmodified	_IHSYFSLIF_					0	0	0		ENST00000501122.2_1_11:65204545-65204752:+|nuORF	ENST00000501122.2_1_11:65204545-65204752:+|nuORF	ENST00000501122.2_1_11:65204545-65204752:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.80078125	2	563.800217	1125.58588	0.43655	0.00024613	0.18498	0.00010429	0.62153	0.00035042	563.8004998745824	102.53	0.22262	102.57	102.42	102.64	0.040916					17	13	2	0	0	0	0.22344	1	26161	26161		15.847	1.9411	1	59847			7486	6864	5023	5060	10236	10236					0.02811217482712891
IHSYFSLIF	9	Unmodified	_IHSYFSLIF_					0	0	0		ENST00000501122.2_1_11:65204545-65204752:+|nuORF	ENST00000501122.2_1_11:65204545-65204752:+|nuORF	ENST00000501122.2_1_11:65204545-65204752:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	563.800217	1125.58588	0.43168	0.00024338	-0.48531	-0.00027362	-0.053636	-3.024E-05	563.800000812984	102.64	0.093597	102.68	102.64	102.74	0.040916	0.035475	-0.00043132	NaN	10.824	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34783			7487	6864	5023	5060							0.02811217482712891
IICYRLLE	8	Unmodified	_IICYRLLE_					0	0	0		ENST00000360663.9_2_10:75230495-75230888:-|nuORF	ENST00000360663.9_2_10:75230495-75230888:-|nuORF	ENST00000360663.9_2_10:75230495-75230888:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.3183288574219	2	511.788795	1021.56304	0.67903	0.00034752	-1.141	-0.00058395	-0.46198	-0.00023643	511.7883522431932	67.516	0.672	67.581	67.348	68.02	0.065063					37	22	3	0	0	0	0.35713	1	15488	15488		14.582	2.9414	1	235630			7488	6157	5024	5061	10237	10237					0.05311875093593699
IICYRLLE	8	Unmodified	_IICYRLLE_					0	0	0		ENST00000360663.9_2_10:75230495-75230888:-|nuORF	ENST00000360663.9_2_10:75230495-75230888:-|nuORF	ENST00000360663.9_2_10:75230495-75230888:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	511.788795	1021.56304	0.48083	0.00024608	-0.33518	-0.00017154	0.14564	7.4539E-05	511.78851099657754	67.538	0.43909	67.538	67.309	67.748	0	-0.021552	0.00032554	NaN	13.508	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259810			7489	6157	5024	5061							0.05311875093593699
IIDNNDTQL	9	Unmodified	_IIDNNDTQL_					0	0	0		nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.78515625	2	523.261653	1044.50875	0.29268	0.00015315	-0.087117	-4.5585E-05	0.20556	0.00010756	523.2619089206885	46.972	0.34964	46.972	46.766	47.116	0					21	12	2	0	0	0	0.24819	1	9427	9427		10.8	2.2062	1	115030			7490	3531	5025	5062	10238	10238					-0.011720455242766548
IIFFKVFYQIY	11	Unmodified	_IIFFKVFYQIY_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.27923583984375	3	494.27948	1479.81661	0.068574	3.3895E-05	-0.24127	-0.00011926	-0.1727	-8.5361E-05	494.2793885080034	114.17	0.33228	114.17	113.97	114.3	0					76	47	2	0	0	0	0.4185	1	29179	29179		0.094841	0	1	43073	+		7491	12748	5026	5063	10239	10239					0.09589425744707114
IIGQQGNF	8	Unmodified	_IIGQQGNF_					0	0	0			REV__nc|ENSG00000172260|Q7Z3B1-2|NEGR1	REV__nc|ENSG00000172260|Q7Z3B1-2|NEGR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.23065185546875	2	438.732335	875.450116	0.12941	5.6777E-05	0.00302	1.325E-06	0.13243	5.8102E-05	438.7322883924788	50.062	0.6023	50.135	49.842	50.444	0.07312					28	20	2	0	0	0	0.3576	1	10258	10258		2.5775	0	1	40131	+		7492	10283	5027	5064	10240	10240					0.00740942691913915
IIIEEFGDIIF	11	Unmodified	_IIIEEFGDIIF_					0	0	0			REV__NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant	REV__NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.9081726074219	3	436.907712	1307.70131	0.25767	0.00011258	0.80929	0.00035358	1.067	0.00046616	436.9079563487807	68.389	0.5733	68.453	68.221	68.794	0.063507					65	21	4	0	0	0	0.3996	1	15745	15745		4.4062	0.81909	1	282170	+		7493	10325	5028	5065	10241	10241					0.05976276823048465
IIIEEFGDIIF	11	Unmodified	_IIIEEFGDIIF_					0	0	0			REV__NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant	REV__NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	436.907712	1307.70131	0.25767	0.00011258	0.80929	0.00035358	1.067	0.00046616	436.9079563487807	68.389	0.5733	68.453	68.221	68.794	0.063507	-0.010329	0.00034274	NaN	4.4062	65	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282170	+		7494	10325	5028	5065							0.05976276823048465
IIKEKTVLLQ	10	Unmodified	_IIKEKTVLLQ_					0	0	0		nc|ENSG00000161681|Q9Y566-2|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1	nc|ENSG00000161681|Q9Y566-2|SHANK1	nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2827758789062	2	592.884281	1183.75401	0.33322	0.00019756	1.0329	0.00061241	1.3662	0.00080997	593.3864422117349	57.699	0.15626	57.767	57.669	57.825	0.068371					6	5	2	0	0	0	0.31731	1	12521	12521		6.2058	2.2614	1	44982			7495	3798	5029	5066	10242	10242					0.16948279676512357
IILFIAIRWE	10	Unmodified	_IILFIAIRWE_					0	0	0			REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3726196289062	2	637.386991	1272.75943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.49	1	101.53	101.03	102.03	0.042656								0	0	0	0.33979	1	25843	25843		0.45834	0	1		+		7496	13199	5030	5067	10243	10243					0.13396003258981182
IILFSQYLRN	10	Unmodified	_IILFSQYLRN_					0	0	0		ENST00000504513.1_2_5:138715022-138715755:-|nuORF;ENST00000506512.1_1_5:138715578-138715872:-|nuORF;SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant;ENSG00000170482|ENST00000348729|SLC23A1;nc|ENSG00000170482|Q9UHI7-2|SLC23A1	ENST00000504513.1_2_5:138715022-138715755:-|nuORF	ENST00000504513.1_2_5:138715022-138715755:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.9116516113281	3	422.911679	1265.71321	0.72233	0.00030548	-0.53579	-0.00022659	0.18654	7.8888E-05	422.9113868238067	55.046	0.53038	55.046	54.85	55.38	0					41	19	3	0	0	0	0.44246	1	11864	11864		3.3196	0.24738	1	135300			7497	4398	5031	5068	10244	10244					0.09097938356899249
IILQQFVP	8	Unmodified	_IILQQFVP_					0	0	0		LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|54|2|anti-sense	LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|54|2|anti-sense	LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|54|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2919921875	2	479.292028	956.569503	0.14504	6.9516E-05	0.040545	1.9433E-05	0.18559	8.8949E-05	479.29192624244087	63.296	0.25352	63.369	63.311	63.565	0.072701					13	9	2	0	0	0	0.51887	1	14239	14239		10.183	0	1	93861			7498	7422	5032	5069	10245	10245					0.08948136316621458
IILRWCCAL	9	Unmodified	_IILRWCCAL_					0	0	0			REV__ENST00000522658.5_1_8:101716602-101717242:-|nuORF	REV__ENST00000522658.5_1_8:101716602-101717242:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7979125976562	2	545.79864	1089.58273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.758	1	26.758	26.258	27.258	0								0	0	0	0.29233	1	3351	3351		0.6015	0	1		+		7499	12303	5033	5070	10246	10246					0.04151927832685942
IILVTILLLL	10	Unmodified	_IILVTILLLL_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2936401367188	2	562.406861	1122.79917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.074	1	56.074	55.574	56.574	0								0	0	0	0.34018	1	12164	12164		0	0	1				7500	5051	5034	5071	10247	10247					0.24268130209725314
IILYSKSSF	9	Unmodified	_IILYSKSSF_					0	0	0			REV__nc|ENSG00000090612|Q14587-2|ZNF268	REV__nc|ENSG00000090612|Q14587-2|ZNF268	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.28173828125	2	529.30005	1056.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.097	1	54.162	53.662	54.662	0.065128								0	0	0	0.23452	1	11425	11425		12.532	3.1841	1		+		7501	8307	5035	5072	10248	10248					0.059517977628502194
IIMFRLILLIL	11	Unmodified	_IIMFRLILLIL_					0	0	0		nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30	nc|ENSG00000134249|Q9UKF2-2|ADAM30	nc|ENSG00000134249|Q9UKF2-2|ADAM30	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.3055725097656	3	453.304972	1356.89309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.2	1	115.21	114.71	115.71	0.013092								0	0	0	0.34212	1	29294	29294		0	0	1				7502	2652	5036	5073	10249	10249					0.22891526040348253
IIPHSEPWPQ	10	Unmodified	_IIPHSEPWPQ_					0	0	0			REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2	REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.87762451171875	3	401.876746	1202.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.239	1	29.317	28.817	29.817	0.078287								0	0	0	0.33681	1	3949	3949		3.8763	2.683	1		+		7503	9049	5037	5074	10250	10250					0.015208168803155786
IIPQEPFLF	9	Unmodified	_IIPQEPFLF_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3115844726562	2	552.310418	1102.60628	0.65254	0.0003604	0.20682	0.00011423	0.85936	0.00047463	552.3103966203521	96.876	0.41148	96.916	96.726	97.137	0.039772					35	20	2	0	0	0	0.17247	1	24478	24478		21.747	3.6117	1	216530			7504	2262	5038	5075	10251	10251					0.059083881425067375
IIQNVYIY	8	Unmodified	_IIQNVYIY_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2869262695312	2	513.286943	1024.55933	0.29514	0.00015149	-0.12824	-6.5824E-05	0.1669	8.5669E-05	513.286757921303	51.351	0.50415	51.421	51.18	51.684	0.069874					61	19	4	0	0	0	0.52502	1	10611	10611		9.3474	0	1	520650	+		7505	8991	5039	5076	10252	10252					0.04803528591378381
IIQSREPSL	9	Unmodified	_IIQSREPSL_					0	0	0		nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT;BRDT|p.S545R|1|0.71|ENSG00000137948|chr1:91981063-91981063|C/A|missense_variant;nc|ENSG00000141867|O60885-2|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000141867|O60885-3|BRD4;nc|ENSG00000137948|Q58F21-5|BRDT;ENSG00000141867|ENST00000679869|BRD4	nc|ENSG00000137948|Q58F21-4|BRDT	nc|ENSG00000137948|Q58F21-4|BRDT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7981567382812	2	521.798206	1041.58186	0.17539	9.1521E-05	-0.13001	-6.7841E-05	0.045382	2.368E-05	521.7980446473136	38.978	0.74335	38.978	38.69	39.433	0					68	28	4	0	0	0	0.02143	2	6990	6946;6990		57.249	24.463	1	235840			7506	2882	5040	5077	10253;10254	10254					0.06273127989015848
IIQSREPSL	9	Unmodified	_IIQSREPSL_					0	0	0		nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT;BRDT|p.S545R|1|0.71|ENSG00000137948|chr1:91981063-91981063|C/A|missense_variant;nc|ENSG00000141867|O60885-2|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000141867|O60885-3|BRD4;nc|ENSG00000137948|Q58F21-5|BRDT;ENSG00000141867|ENST00000679869|BRD4	nc|ENSG00000137948|Q58F21-4|BRDT	nc|ENSG00000137948|Q58F21-4|BRDT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7982177734375	2	521.798206	1041.58186	0.20572	0.00010735	-0.046812	-2.4426E-05	0.15891	8.292E-05	521.7980824040153	38.829	0.61856	38.916	38.744	39.363	0.08688					55	24	3	0	0	0	0.032232	2	6802	6802;6850		49.527	23.259	1	182840			7507	2882	5040	5077	10255;10256	10255					0.06273127989015848
IITWEIIL	8	Unmodified	_IITWEIIL_					0	0	0		nc|ENSG00000163606|Q8TD46-3|CD200R1;nc|ENSG00000163606|Q8TD46-2|CD200R1;ENSG00000206531|ENST00000488794|CD200R1L;nc|ENSG00000206531|Q6Q8B3|CD200R1L;nc|ENSG00000163606|Q8TD46-1|CD200R1;ENSG00000163606|ENST00000308611|CD200R1	nc|ENSG00000163606|Q8TD46-3|CD200R1	nc|ENSG00000163606|Q8TD46-3|CD200R1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.8076477050781	2	500.807511	999.600469	0.28713	0.0001438	0.16653	8.3401E-05	0.45366	0.0002272	500.8074985820484	106.92	0.84127	106.94	106.59	107.43	0.025711					268	83	4	0	0	0	0.39998	2	27442	27442;27510		26.341	0	1	1726200			7508	3923	5041	5078	10257;10258	10257					0.10065289630870211
IIWYFMNF	8	Unmodified	_IIWYFMNF_					0	0	0			REV__ENSG00000145888|ENST00000274576|GLRA1	REV__ENSG00000145888|ENST00000274576|GLRA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2782592773438	2	567.278063	1132.54157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.72	1	116.73	116.23	117.23	0.013062								0	0	0	0.38822	1	29583	29583		0.69038	0	1		+		7509	9529	5042	5079	10259	10259					-0.01939509935141359
IIYETAMFPL	10	Unmodified	_IIYETAMFPL_					0	0	0			REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3154296875	2	599.314843	1196.61513	0.25328	0.0001518	0.14829	8.8872E-05	0.40157	0.00024067	599.3149049993015	95.612	0.71107	95.651	95.503	96.214	0.038872					68	35	3	0	0	0	0.43672	1	24136	24136		7.2892	0.56607	1	222770	+		7510	13113	5043	5080	10260	10260					0.024689937166840537
IIYKILKKKG	10	Unmodified	_IIYKILKKKG_					0	0	0		tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1	tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1	tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.4113159179688	2	602.413009	1202.81146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.58	1	112.58	112.08	113.08	0								0	0	0	0.33979	1	28843	28843		0.45834	0	1				7511	13510	5044	5081	10261	10261					0.21817166672735766
IIYPYEGNNF	10	Unmodified	_IIYPYEGNNF_					0	0	0			REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.29541015625	2	615.295496	1228.57644	0.044954	2.766E-05	-1.5558	-0.00095726	-1.5108	-0.0009296	615.795732949797	93.773	1.2563	93.773	93.031	94.287	0					134	56	5	0	0	0	0.336	1	23673	23673		27.629	12.38	1	938290	+		7512	13080	5045	5082	10262	10262					-0.028705955934810845
IIYPYEGNNF	10	Unmodified	_IIYPYEGNNF_					0	0	0			REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.7960205078125	2	615.295496	1228.57644	0.032623	2.0073E-05	-1.5777	-0.00097073	-1.545	-0.00095065	615.2950763318842	93.76	1.4504	93.797	92.949	94.399	0.037369					151	65	4	0	0	0	0.15224	1	23459	23459		53.833	25.346	1	758020	+		7513	13080	5045	5082	10263	10263					-0.028705955934810845
IIYSYFLV	8	Unmodified	_IIYSYFLV_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.30035400390625	2	509.286411	1016.55827	0.39755	0.00020247	-1.0392	-0.00052925	-0.64164	-0.00032678	509.28586931760526	48.074	0.38536	48.154	48.087	48.472	0.080032					16	13	2	0	0	0	0.3576	1	9600	9600		7.9102	0	1	35619	+		7514	12899	5046	5083	10264	10264					0.050653142224632575
IKALFFLC	8	Unmodified	_IKALFFLC_					0	0	0		ENST00000253925.11_1_11:70229949-70230129:+|nuORF	ENST00000253925.11_1_11:70229949-70230129:+|nuORF	ENST00000253925.11_1_11:70229949-70230129:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2272033691406	2	477.777699	953.540846	-0.2781	-0.00013287	-0.15891	-7.5924E-05	-0.43701	-0.00020879	477.77758748438407	23.744	0.30078	23.844	23.685	23.986	0.099739					39	27	2	0	0	0	0.3576	1	2397	2397		0.79363	0	1	23423			7515	5843	5047	5084	10265	10265					0.0622169541582025
IKAQEEDEDE	10	Unmodified	_IKAQEEDEDE_					0	0	0		ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2615356445312	2	603.262047	1204.50954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.029	1	28.029	27.529	28.529	0								0	0	0	0.33984	1	3717	3717		0.40072	0.40072	1				7516	5460	5048	5085	10266	10266					-0.08453295665890437
IKDKRYEEYAF	11	Unmodified	_IKDKRYEEYAF_					0	0	0			REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2514953613281	3	487.91727	1460.72998	-0.25006	-0.00012201	0.11654	5.6862E-05	-0.13352	-6.5146E-05	487.9173267193642	58.711	0.74586	58.711	58.473	59.219	0					55	26	4	0	0	0	0.38987	1	12953	12953		6.6235	1.2207	1	476640	+		7517	8794	5049	5086	10267	10267					0.01804394452210545
IKEIIWVRNP	10	Unmodified	_IKEIIWVRNP_					0	0	0		ENST00000527278.5_1_7:64389231-64389459:+|nuORF	ENST00000527278.5_1_7:64389231-64389459:+|nuORF	ENST00000527278.5_1_7:64389231-64389459:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.37890625	2	634.379697	1266.74484	-0.17296	-0.00010972	-3.761	-0.0023859	-3.9339	-0.0024956	634.3780198941996	108.15	0.22309	108.15	108.08	108.3	0					42	31	2	0	0	0	0.44496	1	27901	27901		5.7319	0.43497	1	5143700			7518	7002	5050	5087	10268	10268					0.12213931110863996
IKEIPVGWKK	10	Unmodified	_IKEIPVGWKK_					0	0	0			REV__ENSG00000198900|ENST00000361337|TOP1	REV__ENSG00000198900|ENST00000361337|TOP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3800659179688	2	599.371341	1196.72813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.494	1	98.494	97.994	98.994	0								0	0	0	0.33892	1	25087	25087		1.4819	0.15237	1		+		7519	10925	5051	5088	10269	10269					0.1376343022486708
IKEKEKQKFF	10	Unmodified	_IKEKEKQKFF_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.258544921875	3	442.258967	1323.75507	0.31387	0.00013881	-0.12567	-5.5579E-05	0.1882	8.3235E-05	442.25882503146454	68.239	0.69294	68.303	68.129	68.822	0.063507					62	25	4	0	0	0	0.46608	1	15840	15840		1.7423	0.52744	1	401930	+		7520	9979	5052	5089	10270	10270					0.10614494045398715
IKEQKGVKGLF	11	Unmodified	_IKEQKGVKGLF_					0	0	0			REV__tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1	REV__tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2490234375	3	416.255446	1245.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.022	1	60.095	59.595	60.595	0.072338								0	0	0	0.33897	1	13228	13228		1.1098	0.33322	1		+		7521	13050	5053	5090	10271	10271					0.13146511390982596
IKEYAYKFDE	10	Unmodified	_IKEYAYKFDE_					0	0	0		tr|U7SXI9|U7SXI9_FUSNUHistidinol-phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00974PE=3SV=1	tr|U7SXI9|U7SXI9_FUSNUHistidinol-phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00974PE=3SV=1	tr|U7SXI9|U7SXI9_FUSNUHistidinol-phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00974PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.25115966796875	3	435.883566	1304.62887	0.28417	0.00012386	0.22519	9.8159E-05	0.50936	0.00022202	435.8839043508199	74.387	0.19829	74.436	74.342	74.541	0.048546					9	6	2	0	0	0	0.31821	1	17612	17612		3.0723	0.22898	1	56860			7522	13646	5054	5091	10272	10272					-0.011260572505079836
IKGQKNRRK	9	Unmodified	_IKGQKNRRK_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.35986328125	2	564.359631	1126.70471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.48	1	115.5	115	116	0.013092								0	0	0	0.2927	1	29359	29359		0.52476	0	1				7523	4640	5055	5092	10273	10273					0.14642429230934795
IKKDEQEHEF	10	Unmodified	_IKKDEQEHEF_					0	0	0		nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000593455.5_1_19:40486165-40487209:+|nuORF	nc|ENSG00000013275|P43686-2|PSMC4	nc|ENSG00000013275|P43686-2|PSMC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8821105957031	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.034	1	49.111	48.611	49.611	0.076607								0	0	0	0.33952	1	9888	9888		0.77653	0	1				7524	444	5056	5093	10274	10274					-0.01356727024403881
IKKDYNEIR	9	Unmodified	_IKKDYNEIR_					0	0	0			REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.331787109375	2	589.830037	1177.64552	-0.016075	-9.4818E-06	0.17067	0.00010067	0.1546	9.1187E-05	590.33175243444	30.413	0.42494	30.413	30.055	30.48	0					28	21	2	0	0	0	0.25875	1	4351	4351		1.8442	0.36234	1	14792	+		7525	13189	5057	5094	10275	10275					0.06380488426066222
IKKIHIFY	8	Unmodified	_IKKIHIFY_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.329833984375	2	531.328945	1060.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.14	1	114.14	113.64	114.64	0								0	0	0	0.38822	1	29174	29174		0.79363	0.19213	1		+		7526	10887	5058	5095	10276	10276					0.11544104478934969
IKKTMDLTI	9	Unmodified	_IKKTMDLTI_					0	0	0			REV__tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	REV__tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7896728515625	2	531.81501	1061.61547	0.77593	0.00041265	2.1272	0.0011313	2.9031	0.0015439	531.8163188837491	85.115	0.59512	85.138	84.895	85.49	0.023125					42	23	2	0	0	0	0.2446	1	20934	20934		11.64	3.7301	1	156480	+		7527	13146	5059	5096	10277	10277					0.08712413436524002
IKLGKKLVPIP	11	Unmodified	_IKLGKKLVPIP_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.921142578125	2	603.420834	1204.82712	0.50756	0.00030627	-2.7778	-0.0016762	-2.2702	-0.0013699	603.92065729411	112.31	0.11111	112.32	112.28	112.39	0.014595					17	12	2	0	0	0	0.41757	2	28639	28639;28649		0.30703	0.30703	1	545600	+		7528	10685	5060	5097	10278;10279	10278					0.23289453189772757
IKLIEGSKRHS	11	Unmodified	_IKLIEGSKRHS_					0	0	0		nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5;ENST00000554929.1_1_14:70237619-70238175:+|nuORF;ENST00000554465.5_1_14:70237039-70238175:+|nuORF	nc|ENSG00000100650|Q13243-3|SRSF5	nc|ENSG00000100650|Q13243-3|SRSF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.37744140625	2	634.377686	1266.74082	-0.17175	-0.00010896	-0.32653	-0.00020714	-0.49828	-0.0003161	634.3778111439805	108.54	0.17377	108.54	108.45	108.62	0					65	25	4	0	0	0	0.39569	1	27984	27984		5.2969	0.39987	1	6254600			7529	1214	5061	5098	10280	10280					0.11811841617145546
IKLLPSCLHPY	11	Unmodified	_IKLLPSCLHPY_					0	0	0		nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK	nc|ENSG00000168297|Q7Z7A4-7|PXK	nc|ENSG00000168297|Q7Z7A4-7|PXK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8590698242188	2	642.362659	1282.71076	-0.11537	-7.4111E-05	-2.2437	-0.0014413	-2.3591	-0.0015154	642.3615379882201	108.4	0.11186	108.4	108.39	108.5	0					28	16	2	0	0	0	0.3105	1	27960	27960		5.7319	2.1354	1	3477400			7530	4275	5062	5099	10281	10281					0.08071766627563193
IKQEEILF	8	Unmodified	_IKQEEILF_					0	0	0			REV__ENST00000407959.1_1_6:5788581-5788740:-|nuORF	REV__ENST00000407959.1_1_6:5788581-5788740:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.28131103515625	2	510.292225	1018.5699	0.43348	0.0002212	-0.14086	-7.1878E-05	0.29262	0.00014932	510.2921690345123	57.439	0.32703	57.439	57.296	57.623	0					18	11	2	0	0	0	0.53202	1	12624	12624		6.7232	0	1	44702	+		7531	8642	5063	5100	10282	10282					0.06135511245804537
IKQKYAELK	9	Unmodified	_IKQKYAELK_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8399047851562	2	560.839874	1119.66519	0.32162	0.00018038	-0.15	-8.4127E-05	0.17162	9.6252E-05	560.8397156575539	46.635	1.1201	46.718	46.546	47.666	0.083096					155	54	4	0	0	0	0.30757	1	9425	9425		5.7319	0	1	3464000			7532	5252	5064	5101	10283	10283					0.11014864436810967
IKQPSNSQIS	10	Unmodified	_IKQPSNSQIS_					0	0	0		nc|ENSG00000180336|A2RUB1-5|MEIOC;ENSG00000180336|ENST00000409122|MEIOC	nc|ENSG00000180336|A2RUB1-5|MEIOC	nc|ENSG00000180336|A2RUB1-5|MEIOC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.263427734375	2	551.29857	1100.58259	-0.49631	-0.00027361	2.3009	0.0012685	1.8046	0.00099487	551.2996353798098	41.696	0.41768	41.696	41.55	41.968	0					29	15	3	0	0	0	0.31443	1	7818	7818		16.149	3.1066	1	89309			7533	4804	5065	5102	10284	10284					0.03631922638055585
IKQVLVENF	9	Unmodified	_IKQVLVENF_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3169555664062	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.821	1	81.842	81.342	82.342	0.021866								0	0	0	0.22204	1	19855	19855		14.838	1.7958	1				7534	633	5066	5103	10285	10285					0.08222889028479585
IKRHLALIFD	10	Unmodified	_IKRHLALIFD_					0	0	0			REV__ENSG00000004660|ENST00000348335|CAMKK1	REV__ENSG00000004660|ENST00000348335|CAMKK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.7535400390625	2	613.374415	1224.73428	-0.059093	-3.6246E-05	-0.9052	-0.00055523	-0.96429	-0.00059147	613.3744847154131	72.838	0.40933	72.891	72.743	73.152	0.052574					15	13	2	0	0	0	0.31794	1	17152	17152		3.5965	1.5367	1	73694	+		7535	7926	5067	5104	10286	10286					0.13089948456399725
IKRKMMQPF	9	Unmodified	_IKRKMMQPF_					0	0	0		nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF;ENSG00000162664|ENST00000340281|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8299560546875	2	589.830472	1177.64639	0.065026	3.8354E-05	-0.281	-0.00016574	-0.21598	-0.00012739	589.8302165028826	28.44	0.88563	28.522	28.304	29.189	0.082132					89	57	2	0	0	0	0.34646	1	3884	3884		0.6015	0	1	26526			7536	3846	5068	5105	10287	10287					0.06467288269777782
IKSLDDSSNET	11	Unmodified	_IKSLDDSSNET_					0	0	0		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5267639160156	3	403.526218	1207.55683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.492	1	76.492	75.992	76.992	0								0	0	0	0.33024	1	18393	18393		1.9275	0.18523	1				7537	5409	5069	5106	10288	10288					-0.03865016394911436
IKSLDDSSNET	11	Unmodified	_IKSLDDSSNET_					0	0	0		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.8611755371094	3	403.526218	1207.55683	0.1773	7.1546E-05	1.8469	0.00074528	2.0242	0.00081683	403.8614833701598	76.717	0.41402	76.757	76.526	76.94	0.03923					18	14	2	0	0	0	0.40055	1	18271	18271		1.9275	0.18523	1	84444			7538	5409	5069	5106	10289	10289					-0.03865016394911436
IKVRHGQVSYP	11	Unmodified	_IKVRHGQVSYP_					0	0	0			REV__KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	REV__KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3619384765625	2	642.364579	1282.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.87	1	107.87	107.37	108.37	0								0	0	0	0.32709	1	27828	27828		5.2969	1.7004	1		+		7539	8883	5070	5107	10290	10290					0.0845557244565498
IKVYNAPIL	9	Unmodified	_IKVYNAPIL_					0	0	0			REV__ENSG00000162928|ENST00000295030|PEX13	REV__ENSG00000162928|ENST00000295030|PEX13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8184204101562	2	515.81841	1029.62227	0.45195	0.00023313	-0.031417	-1.6205E-05	0.42054	0.00021692	515.8183813146734	68.182	0.44714	68.182	68.049	68.496	0					19	15	2	0	0	0	0.29105	1	15866	15866		7.9102	0	1	99099	+		7540	9916	5071	5108	10291	10291					0.10864094379394373
IKYPENFFLL	10	Unmodified	_IKYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3552856445312	2	642.355357	1282.69616	0.60976	0.00039168	-0.23914	-0.00015361	0.37062	0.00023807	642.3549692795866	79.872	0.63531	79.872	79.562	80.197	0					56	21	4	0	0	0	0.0094986	1	19412	19412		76.825	36.875	1	609160			7541	5550	5072	5109	10292	10292					0.06612017751081112
IKYPENFFLL	10	Unmodified	_IKYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3554077148438	2	642.355357	1282.69616	0.32616	0.00020951	-0.08051	-5.1716E-05	0.24565	0.0001578	642.3550900246482	79.823	0.62888	79.85	79.622	80.251	0.026436					58	21	4	0	0	0	0.020147	1	19270	19270		67.838	35.052	1	594170			7542	5550	5072	5109	10293	10293					0.06612017751081112
ILAAPVAVVI	10	Unmodified	_ILAAPVAVVI_					0	0	0			REV__ENSG00000174339|ENST00000307832|OR2Y1	REV__ENSG00000174339|ENST00000307832|OR2Y1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.3232727050781	2	483.323328	964.632104	0.32194	0.0001556	-0.097735	-4.7238E-05	0.2242	0.00010836	483.323208311389	92.732	1.1969	92.732	92.431	93.628	0					134	46	4	0	0	0	0.3939	1	23531	23531		12.532	0.89125	1	2220500	+		7543	10342	5073	5110	10294	10294					0.1483728238479216
ILAGFGFLTL	10	Unmodified	_ILAGFGFLTL_					0	0	0		ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7518310546875	2	526.312961	1050.61137	0.5008	0.00026358	3.1915	0.0016797	3.6923	0.0019433	526.3146789031384	70.637	0.35761	70.697	70.507	70.864	0.060562					22	14	2	0	0	0	0.31288	1	16491	16491		10.824	0	1	74132			7544	1821	5074	5111	10295	10295					0.08808692005140983
ILDCLLTLL	9	Unmodified	_ILDCLLTLL_					0	0	0		SEMA5A|p.G982D|1|0.27|ENSG00000112902|chr5:9044533-9044533|C/T|missense_variant	SEMA5A|p.G982D|1|0.27|ENSG00000112902|chr5:9044533-9044533|C/T|missense_variant	SEMA5A|p.G982D|1|0.27|ENSG00000112902|chr5:9044533-9044533|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.77630615234375	2	508.806654	1015.59875	0.54619	0.00027791	-0.19423	-9.8825E-05	0.35196	0.00017908	508.80635235569156	92.745	0.27751	92.782	92.671	92.949	0.037048					14	9	2	0	0	0	0.23975	1	23202	23202		14.838	4.0143	1	38405			7545	13360	5075	5112	10296	10296					0.09157912550585934
ILDEAERSL	9	Unmodified	_ILDEAERSL_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2794189453125	2	523.279846	1044.54514	0.023345	1.2216E-05	-1.1302	-0.00059142	-1.1069	-0.0005792	523.2792561445647	46.204	0.31163	46.204	46.039	46.351	0					24	10	3	0	0	0	0.054729	1	9176	9176		42.312	20.776	1	75978			7546	4142	5076	5113	10297	10297					0.02464831372435583
ILDEAERSL	9	Unmodified	_ILDEAERSL_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	523.279846	1044.54514	-0.010456	-5.4715E-06	-0.54469	-0.00028503	-0.55515	-0.0002905	523.279528404055	46.112	0.30331	46.198	46.032	46.336	0.085617	-0.0030625	0.0004345	NaN	42.312	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52816			7547	4142	5076	5113							0.02464831372435583
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENSG00000108559|ENST00000573584|NUP88	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8183898925781	2	509.81841	1017.62227	0.46882	0.00023901	-0.16489	-8.4066E-05	0.30393	0.00015495	509.8181792421872	70.727	0.65176	70.727	70.506	71.158	0					55	22	4	0	0	0	0.021119	3	16609	16609;16651;16738		57.471	23.07	1	415750			7548	1596	5077	5114	10298;10299;10300	10298					0.11416094379421793
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENSG00000108559|ENST00000573584|NUP88	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8183898925781	2	509.81841	1017.62227	0.58257	0.000297	-0.30466	-0.00015532	0.27791	0.00014168	509.8181391608375	70.64	0.63288	70.7	70.453	71.086	0.060562					54	24	3	0	0	0	0.033885	3	16432	16432;16478;16550		48.346	22.947	1	507680			7549	1596	5077	5114	10301;10302;10303	10301					0.11416094379421793
ILDSSWSSF	9	Unmodified	_ILDSSWSSF_					0	0	0		nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3	nc|ENSG00000049246|P56645|PER3	nc|ENSG00000049246|P56645|PER3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7312622070312	2	521.248015	1040.48148	0.19568	0.000102	1.0944	0.00057045	1.2901	0.00067245	521.2486504736147	71.882	0.48911	71.882	71.53	72.019	0					29	17	2	0	0	0	0.20845	1	16898	16898		21.747	3.6117	1	127840			7550	572	5078	5115	10304	10304					-0.03714529064677663
ILERNCEI	8	Unmodified	_ILERNCEI_					0	0	0		ENSG00000203963|ENST00000684719|C1orf141	ENSG00000203963|ENST00000684719|C1orf141	ENSG00000203963|ENST00000684719|C1orf141	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.36260986328125	2	495.257859	988.501166	0.54875	0.00027177	-0.067586	-3.3472E-05	0.48116	0.0002383	495.25756550736133	63.707	0.70287	63.778	63.643	64.346	0.071018					35	23	2	0	0	0	0.53026	1	14514	14514		7.9102	0	1	229000			7551	5449	5079	5116	10305	10305					0.006455236744386639
ILHGCLFCRD	10	Unmodified	_ILHGCLFCRD_					0	0	0			REV__ENST00000474665.1_1_3:45707185-45715939:+|nuORF	REV__ENST00000474665.1_1_3:45707185-45715939:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7984619140625	2	588.786261	1175.55797	-0.040649	-2.3934E-05	1.4944	0.00087988	1.4538	0.00085595	588.78701437714	26.086	0.37327	26.086	25.836	26.209	0					45	28	2	0	0	0	0.31829	1	3110	3110		1.8442	0.36234	1	25364	+		7552	9504	5080	5117	10306	10306					-0.022787520406836848
ILHPALETTAM	11	Unmodified	_ILHPALETTAM_					0	0	0		CRISP3|p.Y208Lfs*2|1|0.1|ENSG00000096006|chr6:49731221-49731222|-/G|frameshift_variant;ENSG00000096006|ENST00000263045|CRISP3	CRISP3|p.Y208Lfs*2|1|0.1|ENSG00000096006|chr6:49731221-49731222|-/G|frameshift_variant	CRISP3|p.Y208Lfs*2|1|0.1|ENSG00000096006|chr6:49731221-49731222|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2763671875	2	598.820824	1195.62709	0.2775	0.00016617	-3.0629	-0.0018341	-2.7854	-0.001668	599.3202774983752	77.828	0.56938	77.828	77.606	78.176	0					34	19	2	0	0	0	0.31023	1	18808	18808		8.1555	1.4324	1	140200			7553	246	5081	5118	10307	10307					0.03710610459847885
ILIDPLTW	8	Unmodified	_ILIDPLTW_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-2|USP43	REV__nc|ENSG00000154914|Q70EL4-2|USP43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7837219238281	2	485.784036	969.553519	0.066715	3.2409E-05	-1.7281	-0.0008395	-1.6614	-0.00080709	485.78318042402975	91.681	0.41241	91.716	91.498	91.91	0.035446					25	14	2	0	0	0	0.46914	1	22842	22842		16.942	1.0951	1	196340	+		7554	9720	5082	5119	10308	10308					0.06752430079700389
ILIDPLTW	8	Unmodified	_ILIDPLTW_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-2|USP43	REV__nc|ENSG00000154914|Q70EL4-2|USP43	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	485.784036	969.553519	0.21817	0.00010598	-2.0563	-0.00099893	-1.8382	-0.00089295	485.7830996812918	91.691	0.48079	91.691	91.507	91.988	0	-0.012348	-0.00013213	NaN	16.942	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227460	+		7555	9720	5082	5119							0.06752430079700389
ILIKLFCK	8	Unmodified	_ILIKLFCK_					0	0	0			REV__ENST00000497960.5_1_22:45560109-45567681:+|nuORF	REV__ENST00000497960.5_1_22:45560109-45567681:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.31451416015625	2	489.314449	976.614345	0.10963	5.3643E-05	-0.13929	-6.8156E-05	-0.02966	-1.4513E-05	489.31434378689283	90.034	0.51487	90.034	89.716	90.231	0					38	21	2	0	0	0	0.54081	1	22459	22459		0.79363	0	1	766540	+		7556	12193	5083	5120	10309	10309					0.1251024385828714
ILIKLLTKIK	10	Unmodified	_ILIKLLTKIK_					0	0	0			REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.9309692382812	2	591.931035	1181.84752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.113	1	58.184	57.684	58.684	0.070477								0	0	0	0.34018	1	12648	12648		0	0	1		+		7557	13058	5084	5121	10310	10310					0.2638662384958934
ILKIEYIHQE	10	Unmodified	_ILKIEYIHQE_					0	0	0		ENSG00000164002|ENST00000415550|EXO5;EXO5|p.D288N|1|0.15|ENSG00000164002|chr1:40515406-40515406|G/A|missense_variant	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3605346679688	2	643.36117	1284.70779	-0.1083	-6.9677E-05	0.025611	1.6477E-05	-0.08269	-5.32E-05	643.3610649839392	107.96	0.18767	107.96	107.9	108.09	0					40	25	2	0	0	0	0.44496	1	27846	27846		5.7319	2.7366	1	9621300			7558	3972	5085	5122	10311	10311					0.07682214774399654
ILKIEYIHQE	10	Unmodified	_ILKIEYIHQE_					0	0	0		ENSG00000164002|ENST00000415550|EXO5;EXO5|p.D288N|1|0.15|ENSG00000164002|chr1:40515406-40515406|G/A|missense_variant	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3623657226562	2	643.36117	1284.70779	-0.10548	-6.786E-05	1.4613	0.00094012	1.3558	0.00087226	643.3626824282516	108.66	0.13383	108.66	108.6	108.74	0					51	16	4	0	0	0	0.44496	1	28013	28013		5.7319	2.7366	1	2851800			7559	3972	5085	5122	10312	10312					0.07682214774399654
ILKIEYIHQE	10	Unmodified	_ILKIEYIHQE_					0	0	0		ENSG00000164002|ENST00000415550|EXO5;EXO5|p.D288N|1|0.15|ENSG00000164002|chr1:40515406-40515406|G/A|missense_variant	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3604736328125	2	643.36117	1284.70779	0.18196	0.00011707	0.069423	4.4664E-05	0.25138	0.00016173	643.3610450571107	107.96	0.18329	107.99	107.91	108.09	0.022224					45	26	2	0	0	0	0.44938	1	27644	27644		4.897	1.9018	1	14397000			7560	3972	5085	5122	10313	10313					0.07682214774399654
ILKIEYIHQE	10	Unmodified	_ILKIEYIHQE_					0	0	0		ENSG00000164002|ENST00000415550|EXO5;EXO5|p.D288N|1|0.15|ENSG00000164002|chr1:40515406-40515406|G/A|missense_variant	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	643.36117	1284.70779	0.18034	0.00011602	1.5293	0.0009839	1.7096	0.0010999	643.3625626135793	108.71	0.098633	108.73	108.68	108.78	0.019402	0.038236	4.9944E-05	NaN	5.7319	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1953400			7561	3972	5085	5122							0.07682214774399654
ILMCFWYL	8	Unmodified	_ILMCFWYL_					0	0	0		ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2474365234375	2	544.769017	1087.52348	0.34661	0.00018882	-1.9433	-0.0010587	-1.5967	-0.00086985	544.7681916485371	79.157	0.35393	79.157	78.928	79.282	0					19	11	2	0	0	0	0.3576	1	19146	19146		6.3541	1.1234	1	80642			7562	3868	5086	5123	10314	10314					-0.016779681814796277
ILMKFYTT	8	Unmodified	_ILMKFYTT_					0	0	0			REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF	REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.77734375	2	508.777896	1015.54124	-0.32185	-0.00016375	-0.51849	-0.00026379	-0.84033	-0.00042754	508.777609928727	21.691	0.25224	21.691	21.592	21.844	0					36	23	2	0	0	0	0.54081	1	1933	1933		0.79363	0	1	22497	+		7563	11682	5087	5124	10315	10315					0.03409070345003329
ILMKFYTT	8	Unmodified	_ILMKFYTT_					0	0	0			REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF	REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	508.777896	1015.54124	-0.32185	-0.00016375	-0.51849	-0.00026379	-0.84033	-0.00042754	508.777609928727	21.691	0.25224	21.691	21.592	21.844	0	0.015606	8.2124E-05	NaN	0.79363	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22497	+		7564	11682	5087	5124							0.03409070345003329
ILMKFYTT	8	Unmodified	_ILMKFYTT_					0	0	0			REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF	REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	508.777896	1015.54124	0.03851	1.9593E-05	-0.68324	-0.00034762	-0.64473	-0.00032802	508.77763147951975	21.558	0.24417	21.66	21.517	21.762	0.10178	-0.015606	-8.5522E-05	NaN	0.79363	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16708	+		7565	11682	5087	5124							0.03409070345003329
ILPCIVLTF	9	Unmodified	_ILPCIVLTF_					0	0	0			REV__RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	REV__RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8037414550781	2	509.803914	1017.59328	0.32258	0.00016445	-0.26517	-0.00013518	0.05741	2.9268E-05	509.8036639285341	78.736	1.8984	78.736	78.153	80.051	0					143	65	3	0	0	0	0.3354	1	19400	19400		2.0598	0	1	544660	+		7566	7927	5088	5125	10316	10316					0.08518233758752558
ILPGSLFRF	9	Unmodified	_ILPGSLFRF_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.310791015625	2	525.310752	1048.60695	0.42796	0.00022481	0.012185	6.4007E-06	0.44015	0.00023121	525.3106757970738	75.038	0.82127	75.038	74.767	75.589	0					72	30	3	0	0	0	0.032194	1	17969	17969		49.554	22.671	1	760420			7567	2798	5089	5126	10317	10317					0.08459227582216045
ILPGSLFRF	9	Unmodified	_ILPGSLFRF_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3110961914062	2	525.310752	1048.60695	0.25983	0.00013649	0.14363	7.545E-05	0.40345	0.00021194	525.3107224222903	75.121	0.78351	75.165	74.812	75.595	0.044037					71	28	3	0	0	0	0.03918	1	17786	17786		45.7	17.213	1	845200			7568	2798	5089	5126	10318	10318					0.08459227582216045
ILPGVVTSP	9	Unmodified	_ILPGVVTSP_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.7682800292969	2	441.768386	881.522219	0.60009	0.0002651	-0.61367	-0.0002711	-0.01358	-5.9994E-06	441.7679754702995	99.785	0.87597	99.785	99.433	100.31	0					110	46	3	0	0	0	0.31496	3	25437	25437;25481;25525		4.756	0	1	6807700			7569	4729	5090	5127	10319;10320;10321	10319					0.07671857045602337
ILPGVVTSP	9	Unmodified	_ILPGVVTSP_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.7681884765625	2	441.768386	881.522219	0.38034	0.00016802	-0.53416	-0.00023597	-0.15382	-6.7953E-05	441.76815877078076	99.714	0.85995	99.756	99.479	100.34	0.042839					140	53	4	0	0	0	0.31496	3	25279	25279;25324;25368		4.756	0	1	8065400			7570	4729	5090	5127	10322;10323;10324	10322					0.07671857045602337
ILPLSLTVS	9	Unmodified	_ILPLSLTVS_					0	0	0		ENST00000420509.1_1_2:206949343-206949463:+|nuORF	ENST00000420509.1_1_2:206949343-206949463:+|nuORF	ENST00000420509.1_1_2:206949343-206949463:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.79608154296875	2	471.797143	941.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.748	1	38.748	38.248	39.248	0								0	0	0	0.2927	1	6915	6915		0.52476	0	1				7571	6446	5091	5128	10325	10325					0.106606992511729
ILPPFIWTL	9	Unmodified	_ILPPFIWTL_					0	0	0		ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.3314819335938	2	550.331153	1098.64775	0.02934	1.6147E-05	0.34274	0.00018862	0.37208	0.00020477	550.331104920298	107.61	0.098152	107.61	107.52	107.62	0					17	10	2	0	0	0	0.21398	1	27771	27771		16.942	4.4107	1	306610			7572	2559	5092	5129	10326	10326					0.10237568901834493
ILPPFIWTL	9	Unmodified	_ILPPFIWTL_					0	0	0		ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.3312377929688	2	550.331153	1098.64775	0.39387	0.00021676	-0.22494	-0.00012379	0.16894	9.2971E-05	550.3306629373614	107.6	0.14084	107.62	107.49	107.63	0.022224					27	16	2	0	0	0	0.24365	1	27555	27555		13.508	5.5977	1	587990			7573	2559	5092	5129	10327	10327					0.10237568901834493
ILPPFIWTL	9	Unmodified	_ILPPFIWTL_					0	0	0		ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	550.331153	1098.64775	0.39317	0.00021637	0.60122	0.00033087	0.99439	0.00054724	550.3315110004269	107.45	0.052399	107.48	107.44	107.49	0.025711	-0.06556	5.18E-05	NaN	16.942	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27725			7574	2559	5092	5129							0.10237568901834493
ILPPQLALF	9	Unmodified	_ILPPQLALF_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.31524658203125	2	506.315503	1010.61645	0.38278	0.00019381	-0.12041	-6.0967E-05	0.26237	0.00013284	506.3153658029225	91.695	0.88828	91.695	91.405	92.294	0					82	33	3	0	0	0	0.065541	1	23133	23133		39.957	23.015	1	297600			7575	1526	5093	5130	10328	10328					0.1115699586774781
ILPPQLALF	9	Unmodified	_ILPPQLALF_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.31536865234375	2	506.315503	1010.61645	0.27124	0.00013733	-0.02979	-1.5083E-05	0.24145	0.00012225	506.315445234077	91.671	0.95975	91.706	91.41	92.37	0.035446					87	33	3	0	0	0	0.017037	1	22939	22939		60.39	37.241	1	355710			7576	1526	5093	5130	10329	10329					0.1115699586774781
ILPPTSYIF	9	Unmodified	_ILPPTSYIF_					0	0	0		ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.79736328125	2	525.797143	1049.57973	0.49802	0.00026186	-0.32621	-0.00017152	0.17181	9.0338E-05	525.7968655923357	83.466	0.78967	83.466	83.2	83.99	0					68	26	3	0	0	0	0.004541	2	20521	20521;20601		89.427	42.506	1	645000			7577	6693	5094	5131	10330;10331	10330					0.05692699251153499
ILPPTSYIF	9	Unmodified	_ILPPTSYIF_					0	0	0		ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7972412109375	2	525.797143	1049.57973	0.16334	8.5883E-05	-0.0089559	-4.709E-06	0.15438	8.1174E-05	525.7970645226512	83.424	0.97728	83.446	83.164	84.142	0.021744					73	34	3	0	0	0	0.0099477	4	20349	20316;20349;20426;20469		67.344	29.193	1	721890			7578	6693	5094	5131	10332;10333;10334;10335	10333					0.05692699251153499
ILPREFYAW	9	Unmodified	_ILPREFYAW_					0	0	0		ENSG00000197037|ENST00000394152|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENST00000466948.1_1_7:99217289-99228306:+|nuORF;ENST00000481424.5_1_7:99217223-99217685:+|nuORF;nc|ENSG00000197037|Q6NSZ9-4|ZSCAN25	ENSG00000197037|ENST00000394152|ZSCAN25	ENSG00000197037|ENST00000394152|ZSCAN25	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.79541015625	2	597.818941	1193.62333	0.41481	0.00024798	0.019626	1.1733E-05	0.43443	0.00025971	597.8190889226936	68.797	0.4906	68.797	68.641	69.132	0					34	18	3	0	0	0	0.1789	1	16035	16035		29.082	20.488	1	198820			7579	5265	5095	5132	10336	10336					0.03426308748316842
ILPREFYAW	9	Unmodified	_ILPREFYAW_					0	0	0		ENSG00000197037|ENST00000394152|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENST00000466948.1_1_7:99217289-99228306:+|nuORF;ENST00000481424.5_1_7:99217223-99217685:+|nuORF;nc|ENSG00000197037|Q6NSZ9-4|ZSCAN25	ENSG00000197037|ENST00000394152|ZSCAN25	ENSG00000197037|ENST00000394152|ZSCAN25	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.79541015625	2	597.818941	1193.62333	0.18518	0.0001107	-0.13626	-8.1459E-05	0.048918	2.9244E-05	597.8187411385404	68.684	0.41177	68.746	68.587	68.998	0.062126					36	15	3	0	0	0	0.1789	1	15868	15868		29.082	12.932	1	182720			7580	5265	5095	5132	10337	10337					0.03426308748316842
ILPSDIMDF	9	Unmodified	_ILPSDIMDF_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7809448242188	2	525.762443	1049.51033	0.47548	0.00024999	1.2853	0.00067574	1.7607	0.00092573	525.7627764408654	83.435	0.30058	83.435	83.279	83.58	0					11	9	2	0	0	0	0.20367	1	20551	20551		18.135	4.6271	1	53567			7581	2025	5096	5133	10338	10338					-0.012441277598782108
ILPTLVPWYF	10	Unmodified	_ILPTLVPWYF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8558959960938	2	624.854993	1247.69543	-0.29965	-0.00018724	0.31699	0.00019808	0.017349	1.0841E-05	624.8551665484936	107.07	0.24725	107.07	106.93	107.17	0					40	25	2	0	0	0	0.45627	3	27600	27600;27642;27646		3.5965	0.31518	1	35295			7582	1119	5097	5134	10339;10340;10341	10339					0.08149223102009273
ILPTLVPWYF	10	Unmodified	_ILPTLVPWYF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.7857055664062	2	624.854993	1247.69543	0.19735	0.00012332	-0.1167	-7.2919E-05	0.080655	5.0398E-05	624.854645943672	107.05	0.14616	107.08	107	107.15	0.025711					17	14	2	0	0	0	0.45627	2	27403	27403;27423		3.5965	0.31518	1	42042			7583	1119	5097	5134	10342;10343	10342					0.08149223102009273
ILPTLVPWYF	10	Unmodified	_ILPTLVPWYF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8543090820312	2	624.854993	1247.69543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.93	1	106.96	106.46	107.46	0.025711								0	0	0	0.33711	1	27387	27387		3.5965	0.31518	1				7584	1119	5097	5134	10344	10344					0.08149223102009273
ILPVSVESSHL	11	Unmodified	_ILPVSVESSHL_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8331298828125	2	590.832246	1179.64994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.77	1	106.79	106.29	107.29	0.025711								0	0	0	0.33873	1	27341	27341		1.1933	0	1				7585	3399	5098	5135	10345	10345					0.06729952849013898
ILQKVYDF	8	Unmodified	_ILQKVYDF_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2872314453125	2	513.286943	1024.55933	0.19492	0.00010005	0.044011	2.259E-05	0.23893	0.00012264	513.2868762318052	51.426	0.50002	51.426	51.152	51.652	0					50	16	4	0	0	0	0.4772	1	10713	10713		15.847	0	1	556850			7586	13575	5099	5136	10346	10346					0.04803528591378381
ILQKVYDF	8	Unmodified	_ILQKVYDF_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	513.286943	1024.55933	0.29514	0.00015149	-0.12824	-6.5824E-05	0.1669	8.5669E-05	513.286757921303	51.351	0.50415	51.421	51.18	51.684	0.069874	-0.0027421	-9.6523E-05	NaN	15.847	61	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520650			7587	13575	5099	5136							0.04803528591378381
ILRHHVNR	8	Unmodified	_ILRHHVNR_					0	0	0		ENST00000378426.5_2_X:40498361-40506375:-|nuORF;nc|nan|Q8TB03-3|CXorf38;ENST00000378421.1_2_X:40499458-40506772:-|nuORF;ENSG00000185753|ENST00000327877|CXorf38	ENST00000378426.5_2_X:40498361-40506375:-|nuORF	ENST00000378426.5_2_X:40498361-40506375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.8121337890625	2	522.812316	1043.61008	-0.028872	-1.5095E-05	-0.20894	-0.00010924	-0.23781	-0.00012433	522.8120643077095	90.747	0.588	90.782	90.581	91.169	0.035446					38	22	2	0	0	0	0.53858	1	22578	22578		2.3027	2.3027	1	360690			7588	5043	5100	5137	10347	10347					0.0900191547959821
ILSCQNAQL	9	Unmodified	_ILSCQNAQL_					0	0	0		ENSG00000104059|ENST00000261275|ENTREP2	ENSG00000104059|ENST00000261275|ENTREP2	ENSG00000104059|ENST00000261275|ENTREP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2583923339844	2	495.257859	988.501166	0.66417	0.00032893	-0.22931	-0.00011357	0.43486	0.00021537	495.25756907226537	63.88	0.92258	63.88	63.679	64.601	0					46	32	2	0	0	0	0.30005	1	14683	14683		6.7232	0.96273	1	196810			7589	1394	5101	5138	10348	10348					0.006455236744386639
ILSFVKMHGDG	11	Unmodified	_ILSFVKMHGDG_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87774658203125	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.182	1	26.182	25.682	26.682	0								0	0	0	0.33835	1	3190	3190		0.45452	0.1855	1		+		7590	9592	5102	5139	10349	10349					0.018577436626628696
ILSTFSPTSHS	11	Unmodified	_ILSTFSPTSHS_					0	0	0			REV__nc|ENSG00000169894|Q02505-2|MUC3A	REV__nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7984619140625	2	588.798403	1175.58225	-0.045817	-2.6977E-05	0.53716	0.00031628	0.49134	0.0002893	588.7986442605358	25.872	0.41353	25.872	25.689	26.102	0					65	31	3	0	0	0	0.40578	1	3110	3110		2.9952	1.151	1	60751	+		7591	10189	5103	5140	10350	10350					0.0014850291820494022
ILSTTRKPF	9	Unmodified	_ILSTTRKPF_					0	0	0			REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF	REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8174438476562	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.519	1	81.519	81.019	82.019	0								0	0	0	0.25692	1	19926	19926		7.9102	3.1541	1		+		7592	9980	5104	5141	10351	10351					0.09498308748334239
ILTLLHVKRL	10	Unmodified	_ILTLLHVKRL_					0	0	0			REV__SLC4A8|p.F955L|1|0.19|ENSG00000050438|chr12:51495040-51495040|C/G|missense_variant	REV__SLC4A8|p.F955L|1|0.19|ENSG00000050438|chr12:51495040-51495040|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.4097290039062	2	603.408258	1204.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.18	1	109.2	108.7	109.7	0.019402								0	0	0	0.33984	1	27915	27915		0.40072	0	1		+		7593	12989	5105	5142	10352	10352					0.20775398387218047
ILTLLHVKRL	10	Unmodified	_ILTLLHVKRL_					0	0	0			REV__SLC4A8|p.F955L|1|0.19|ENSG00000050438|chr12:51495040-51495040|C/G|missense_variant	REV__SLC4A8|p.F955L|1|0.19|ENSG00000050438|chr12:51495040-51495040|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.4114379882812	2	603.408258	1204.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.19	1	109.21	108.71	109.71	0.019402								0	0	0	0.33905	1	27920	27920		1.3295	0.92882	1		+		7594	12989	5105	5142	10353	10353					0.20775398387218047
ILTPESTHPV	10	Unmodified	_ILTPESTHPV_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2855834960938	2	547.298039	1092.58152	-0.029106	-1.5929E-05	-0.21367	-0.00011694	-0.24278	-0.00013287	547.2977384238811	39.823	0.5293	39.823	39.542	40.071	0					27	17	2	0	0	0	0.44246	1	7259	7259		6.2058	1.3088	1	24205	+		7595	8767	5106	5143	10354	10354					0.038937082691290925
ILVLFQEE	8	Unmodified	_ILVLFQEE_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7791748046875	2	495.778951	989.543348	0.89349	0.00044297	-0.26793	-0.00013283	0.62556	0.00031014	495.778756973679	81.802	0.23842	81.802	81.632	81.87	0					11	7	2	0	0	0	0.53423	1	20025	20025		5.2307	0.47466	1	35619	+		7596	10747	5107	5144	10355	10355					0.0481582235447604
ILVLFQEE	8	Unmodified	_ILVLFQEE_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.778951	989.543348	0.51439	0.00025502	-0.25919	-0.0001285	0.2552	0.00012652	495.7786285601597	81.747	0.22871	81.769	81.676	81.905	0.021866	-0.016726	3.9586E-06	NaN	5.2307	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44667	+		7597	10747	5107	5144							0.0481582235447604
ILVNFQDRRKK	11	Unmodified	_ILVNFQDRRKK_					0	0	0			REV__ENSG00000170485|ENST00000335681|NPAS2	REV__ENSG00000170485|ENST00000335681|NPAS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2832336425781	3	472.952649	1415.83612	0.031151	1.4733E-05	-0.96161	-0.00045479	-0.93046	-0.00044006	472.9521428007046	96.049	0.31973	96.089	95.863	96.183	0.039772					23	16	2	0	0	0	0.31097	1	24168	24168		1.2148	0.51716	1	122080	+		7598	9188	5108	5145	10356	10356					0.14483194808144617
ILWGGDALQI	10	Unmodified	_ILWGGDALQI_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.303955078125	2	543.303124	1084.5917	0.68243	0.00037077	-0.25527	-0.00013869	0.42716	0.00023208	543.3028986570922	67.607	1.4999	67.67	67.377	68.876	0.063507					139	54	4	0	0	0	0.40359	1	15877	15877		11.495	0.67078	1	2982500	+		7599	9348	5109	5146	10357	10357					0.05278315994382865
ILYILLVGYP	10	Unmodified	_ILYILLVGYP_					0	0	0		ENSG00000058404|ENST00000395749|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000070808|Q9UQM7|CAMK2A;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;ENST00000508662.5_1_5:149618053-149669203:-|nuORF;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;ENSG00000145349|ENST00000511664|CAMK2D;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000070808|ENST00000671881|CAMK2A;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;ENST00000472912.5_1_10:75578585-75620616:-|nuORF;ENST00000523845.5_1_7:44260423-44302632:-|nuORF	ENSG00000058404|ENST00000395749|CAMK2B	ENSG00000058404|ENST00000395749|CAMK2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.321533203125	2	582.357368	1162.70018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.49	1	105.49	104.99	105.99	0								0	0	0	0.33861	1	27177	27177		1.8442	0	1				7600	628	5110	5147	10358	10358					0.12534107244800907
ILYRLKLL	8	Unmodified	_ILYRLKLL_					0	0	0			REV__ENST00000487986.1_1_3:193332581-193346300:+|nuORF	REV__ENST00000487986.1_1_3:193332581-193346300:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8479614257812	2	516.35242	1030.69029	0.30622	0.00015812	-2.8336	-0.0014631	-2.5273	-0.001305	516.3497098666512	112.01	0.20955	112.02	111.95	112.16	0.014595					40	26	2	0	0	0	0.3576	1	28548	28548		2.3027	0.4585	1	640710	+		7601	10916	5111	5148	10359	10359					0.17616964030071358
ILYRPIQKL	9	Unmodified	_ILYRPIQKL_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3662109375	2	572.366059	1142.71756	0.44619	0.00025538	-0.14833	-8.49E-05	0.29786	0.00017049	572.3658855188448	53.883	1.1587	53.883	53.293	54.451	0					106	43	3	0	0	0	0.19398	1	11621	11621		19.257	4.4187	1	449290	+		7602	9899	5112	5149	10360	10360					0.15191447570464334
ILYRPIQKL	9	Unmodified	_ILYRPIQKL_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.366455078125	2	572.366059	1142.71756	0.45467	0.00026024	-0.16142	-9.2394E-05	0.29324	0.00016784	572.365912828571	53.856	1.1575	53.922	53.27	54.427	0.065285					113	49	3	0	0	0	0.19398	1	11443	11443		19.257	1.1106	1	336810	+		7603	9899	5112	5149	10361	10361					0.15191447570464334
IMADIRAQYE	10	Unmodified	_IMADIRAQYE_					0	0	0		CON__P05784	CON__P05784	CON__P05784	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2154846191406	3	403.869262	1208.58596	0.094186	3.8039E-05	-0.22636	-9.142E-05	-0.13217	-5.3381E-05	403.86910502503054	31.878	0.47853	31.878	31.705	32.183	0					42	19	3	0	0	0	0.45904	1	4866	4866		3.0723	0.22898	1	35032		+	7604	218	5113	5150	10362	10362					-0.009991505795824196
IMAVTMDLA	9	Unmodified	_IMAVTMDLA_					0	0	0		ENSG00000065268|ENST00000585809|WDR18;ENST00000591276.1_1_19:990686-991256:+|nuORF	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.748046875	2	482.745739	963.476925	-0.094274	-4.551E-05	0.3199	0.00015443	0.22563	0.00010892	482.74614166322533	36.176	0.92181	36.176	35.854	36.776	0					112	35	5	0	0	0	0.3354	1	6194	6194		2.0598	0.21551	1	224680			7605	679	5114	5151	10363	10363					-0.006274528034509785
IMCMWWDRI	9	Unmodified	_IMCMWWDRI_					0	0	0			REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2852172851562	2	627.28504	1252.55553	0.18797	0.00011791	-0.61067	-0.00038307	-0.4227	-0.00026516	627.2845184498428	47.104	0.88274	47.104	46.789	47.672	0					49	30	2	0	0	0	0.34646	1	9595	9595		0.6015	0.076735	1	90286	+		7606	10362	5115	5152	10364	10364					-0.06064923770009045
IMDFQKWKL	9	Unmodified	_IMDFQKWKL_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5549621582031	3	403.554727	1207.64235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.631	1	34.631	34.131	35.131	0								0	0	0	0.28946	1	5675	5675		1.1933	0	1				7607	4684	5116	5153	10365	10365					0.046835220477305484
IMDKKFWM	8	Unmodified	_IMDKKFWM_					0	0	0		ENST00000381340.7_1_12:26818868-26818943:-|nuORF	ENST00000381340.7_1_12:26818868-26818943:-|nuORF	ENST00000381340.7_1_12:26818868-26818943:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7767333984375	2	549.777373	1097.54019	0.34645	0.00019047	-2.38	-0.0013085	-2.0336	-0.001118	549.7759702774811	95.239	0.33115	95.239	95.074	95.405	0					18	14	2	0	0	0	0.53118	1	24086	24086		7.2892	0.56607	1	65622			7608	6297	5117	5154	10366	10366					-0.0046746729553888144
IMEAPLGVQ	9	Unmodified	_IMEAPLGVQ_					0	0	0		SGCZ|p.R221L|1|0.27|ENSG00000185053|chr8:14102458-14102458|C/A|missense_variant	SGCZ|p.R221L|1|0.27|ENSG00000185053|chr8:14102458-14102458|C/A|missense_variant	SGCZ|p.R221L|1|0.27|ENSG00000185053|chr8:14102458-14102458|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7690124511719	2	479.257328	956.500103	-0.81074	-0.00038855	0.34002	0.00016296	-0.47073	-0.0002256	479.2575335176559	41.538	1.4835	41.538	40.822	42.305	0					92	53	3	0	0	0	0.25579	1	7558	7558		4.3292	0	1	464690			7609	13361	5118	5155	10367	10367					0.02011309305555642
IMEGVYSEL	9	Unmodified	_IMEGVYSEL_					0	0	0		ENST00000547994.5_1_12:56718022-56726878:-|nuORF;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000549964.1_1_12:56726569-56726878:-|nuORF	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.313232421875	2	520.752075	1039.4896	0.45649	0.00023772	0.053559	2.7891E-05	0.51004	0.00026561	520.7520619649117	65.509	0.70882	65.575	65.316	66.025	0.066872					42	27	2	0	0	0	0.19376	1	14956	14956		25.399	4.9457	1	130180			7610	2733	5119	5156	10368	10368					-0.028567181395374064
IMEKLTEV	8	Unmodified	_IMEKLTEV_					0	0	0			REV__ENST00000564276.1_1_15:72502555-72511438:-|nuORF	REV__ENST00000564276.1_1_15:72502555-72511438:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.750732421875	2	481.764986	961.515419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.038	1	40.038	39.538	40.538	0								0	0	0	0.38822	1	7305	7305		5.7604	0	1		+		7611	8121	5120	5157	10369	10369					0.033121761027246066
IMELAGQNEE	10	Unmodified	_IMELAGQNEE_					0	0	0			REV__SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant	REV__SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2796630859375	2	567.260796	1132.50704	-0.06658	-3.7768E-05	-0.59524	-0.00033766	-0.66182	-0.00037542	567.2606140002551	72.26	0.69028	72.26	71.972	72.662	0					48	23	3	0	0	0	0.25276	1	17095	17095		27.629	6.0918	1	142780	+		7612	9016	5121	5158	10370	10370					-0.05391422604566287
IMELAGQNEE	10	Unmodified	_IMELAGQNEE_					0	0	0			REV__SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant	REV__SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.260009765625	2	567.260796	1132.50704	0.1055	5.9844E-05	-0.78622	-0.00044599	-0.68073	-0.00038615	567.2603546983876	72.259	0.82734	72.315	71.867	72.694	0.055931					54	28	3	0	0	0	0.25276	1	16910	16910		27.629	8.3718	1	159770	+		7613	9016	5121	5158	10371	10371					-0.05391422604566287
IMFKKRERFV	10	Unmodified	_IMFKKRERFV_					0	0	0			REV__ENSG00000234828|ENST00000636793|IQCM	REV__ENSG00000234828|ENST00000636793|IQCM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.9326171875	3	451.932309	1352.7751	0.18566	8.3907E-05	0.59119	0.00026718	0.77685	0.00035109	451.93252740718833	91.653	0.65634	91.688	91.334	91.991	0.035446					60	23	3	0	0	0	0.47199	1	22824	22824		0.62683	0.17231	1	255220	+		7614	11048	5122	5159	10372	10372					0.11281966504361662
IMFMLPIFF	9	Unmodified	_IMFMLPIFF_					0	0	0			REV__ENSG00000112486|ENST00000341935|CCR6	REV__ENSG00000112486|ENST00000341935|CCR6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.8086547851562	2	579.808142	1157.60173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.39	1	107.42	106.92	107.92	0.025711								0	0	0	0.28409	1	27513	27513		2.3027	0	1		+		7615	8714	5123	5160	10373	10373					0.029234644037387625
IMIMMMRDK	9	Unmodified	_IMIMMMRDK_					0	0	0			REV__nc|ENSG00000169490|Q9BX73-2|TM2D2	REV__nc|ENSG00000169490|Q9BX73-2|TM2D2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7889404296875	2	584.789101	1167.56365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.164	1	16.164	15.664	16.664	0								0	0	0	0.29303	1	680	680		0.45834	0	1		+		7616	12839	5124	5161	10374	10374					-0.013431128448701202
IMIVFHTL	8	Unmodified	_IMIVFHTL_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;nc|ENSG00000164393|Q8IZF7|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.93524169921875	2	487.280606	972.546659	-0.27644	-0.0001347	3.136	0.0015281	2.8596	0.0013934	487.2820630169704	43.461	0.24831	43.461	43.39	43.638	0					11	9	2	0	0	0	0.3576	1	8364	8364		8.5933	2.2392	1	18457			7617	7550	5125	5162	10375	10375					0.059287939275009194
IMIVYFLF	8	Unmodified	_IMIVYFLF_					0	0	0		CCR2|p.T247I|1|0.3|ENSG00000121807|chr3:46358267-46358267|C/T|missense_variant;ENSG00000160791|ENST00000292303|CCR5;ENSG00000121807|ENST00000445132|CCR2;nc|ENSG00000121807|P41597|CCR2	CCR2|p.T247I|1|0.3|ENSG00000121807|chr3:46358267-46358267|C/T|missense_variant	CCR2|p.T247I|1|0.3|ENSG00000121807|chr3:46358267-46358267|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2816772460938	2	523.293182	1044.57181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.791	1	89.791	89.291	90.291	0								0	0	0	0.38643	1	22438	22438		17.087	2.5049	1				7618	111	5126	5163	10376	10376					0.05130848730050275
IMIVYFLF	8	Unmodified	_IMIVYFLF_					0	0	0		CCR2|p.T247I|1|0.3|ENSG00000121807|chr3:46358267-46358267|C/T|missense_variant;ENSG00000160791|ENST00000292303|CCR5;ENSG00000121807|ENST00000445132|CCR2;nc|ENSG00000121807|P41597|CCR2	CCR2|p.T247I|1|0.3|ENSG00000121807|chr3:46358267-46358267|C/T|missense_variant	CCR2|p.T247I|1|0.3|ENSG00000121807|chr3:46358267-46358267|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.28173828125	2	523.293182	1044.57181	0.047113	2.4654E-05	1.3487	0.00070574	1.3958	0.00073039	523.7968152189698	89.786	0.23245	89.82	89.673	89.906	0.034065					13	8	2	0	0	0	0.46808	1	22275	22275		17.087	4.555	1	74098			7619	111	5126	5163	10377	10377					0.05130848730050275
IMLACFTLLF	10	Unmodified	_IMLACFTLLF_					0	0	0			REV__ENSG00000197296|ENST00000396825|FITM2	REV__ENSG00000197296|ENST00000396825|FITM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.7598876953125	2	586.316331	1170.61811	0.77463	0.00045418	-2.2204	-0.0013019	-1.4458	-0.00084769	586.3150639305196	93.507	0.84161	93.507	92.928	93.77	0					53	32	2	0	0	0	0.30935	1	23588	23588		16.942	4.4107	1	105350	+		7620	10849	5127	5164	10378	10378					0.039625455698342194
IMLKQPEF	8	Unmodified	_IMLKQPEF_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.28460693359375	2	503.275521	1004.53649	0.28025	0.00014104	-0.95482	-0.00048054	-0.67457	-0.0003395	503.2750999397302	83.881	0.46896	83.903	83.723	84.192	0.021744					19	16	2	0	0	0	0.35759	1	20446	20446		9.3474	2.0582	1	50194	+		7621	10297	5128	5165	10379	10379					0.0344018620226052
IMLLNPQK	8	Unmodified	_IMLLNPQK_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7857971191406	2	478.783513	955.552473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.333	1	92.333	91.833	92.833	0								0	0	0	0.38822	1	23213	23213		9.3474	1.4373	1		+		7622	10256	5129	5166	10380	10380					0.07291892439161529
IMLMQCANRI	10	Unmodified	_IMLMQCANRI_					0	0	0			REV__CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	REV__CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2958374023438	2	596.803597	1191.59264	0.40136	0.00023953	0.15766	9.4095E-05	0.55902	0.00033363	596.8036406553841	92.127	0.95412	92.127	91.559	92.513	0					50	35	2	0	0	0	0.31794	1	23236	23236		3.5965	0	1	133760	+		7623	7867	5130	5167	10381	10381					0.004507477757670131
IMLMQCANRI	10	Unmodified	_IMLMQCANRI_					0	0	0			REV__CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	REV__CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	596.803597	1191.59264	0.2094	0.00012497	0.47687	0.0002846	0.68628	0.00040957	596.8039417341913	91.95	0.68183	91.987	91.72	92.402	0.036522	-0.070045	0.00019273	NaN	3.5965	42	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98825	+		7624	7867	5130	5167							0.004507477757670131
IMLWIETL	8	Unmodified	_IMLWIETL_					0	0	0			REV__ENST00000483075.1_1_7:14026292-14028664:-|nuORF	REV__ENST00000483075.1_1_7:14026292-14028664:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7830810546875	2	509.785721	1017.55689	0.23658	0.00012061	-3.5717	-0.0018208	-3.3352	-0.0017002	510.2852721760814	94.851	0.34592	94.89	94.742	95.088	0.038544					31	14	4	0	0	0	0.41225	1	23851	23851		24.674	1.5255	1	73129	+		7625	12110	5131	5168	10382	10382					0.048813568620630576
IMPTIFNLI	9	Unmodified	_IMPTIFNLI_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3062744140625	2	531.306821	1060.59909	0.26085	0.00013859	-0.14332	-7.6148E-05	0.11753	6.2445E-05	531.306588582722	103	0.41988	103	102.77	103.19	0					48	25	3	0	0	0	0.11547	2	26428	26428;26466		29.082	13.234	1	105640			7626	800	5132	5169	10383;10384	10383					0.0712133227045797
IMPTIFNLI	9	Unmodified	_IMPTIFNLI_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.306640625	2	531.306821	1060.59909	0.50043	0.00026588	-0.38459	-0.00020433	0.11584	6.1548E-05	531.3064797539324	102.91	0.38023	102.95	102.78	103.16	0.040916					61	30	3	0	0	0	0.2125	1	26271	26271		17.113	3.2068	1	115700			7627	800	5132	5169	10385	10385					0.0712133227045797
IMQATFEE	8	Unmodified	_IMQATFEE_					0	0	0			REV__ENST00000554585.5_1_14:105236680-105238139:-|nuORF	REV__ENST00000554585.5_1_14:105236680-105238139:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7223815917969	2	484.723318	967.432083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.683	1	71.741	71.241	72.241	0.058578								0	0	0	0.38822	1	16764	16764		12.532	0	1		+		7628	9425	5133	5170	10386	10386					-0.05293560345126025
IMVLYSYVE	9	Unmodified	_IMVLYSYVE_					0	0	0			REV__tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	REV__tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2603149414062	2	558.785918	1115.55728	0.368	0.00020563	1.8683	0.001044	2.2363	0.0012496	558.7875953836686	53.324	0.34904	53.324	53.164	53.513	0					23	15	2	0	0	0	0.2404	1	11375	11375		13.508	0.46542	1	104940	+		7629	13311	5134	5171	10387	10387					0.004127317912661965
IMVTNPHY	8	Unmodified	_IMVTNPHY_					0	0	0		ENSG00000162723|ENST00000368093|SLAMF9;nc|ENSG00000162723|Q96A28-2|SLAMF9;ENST00000489098.1_1_1:159921578-159923948:-|nuORF	ENSG00000162723|ENST00000368093|SLAMF9	ENSG00000162723|ENST00000368093|SLAMF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7423400878906	2	487.741845	973.469137	0.22785	0.00011113	0.11669	5.6913E-05	0.34453	0.00016804	487.7418860403123	48.126	1.3943	48.206	47.685	49.079	0.080029					70	49	2	0	0	0	0.52502	1	9698	9698		9.3474	0.75416	1	91878			7630	3852	5135	5172	10388	10388					-0.01865844008705153
IMWAEDHKGVE	11	Unmodified	_IMWAEDHKGVE_					0	0	0			REV__ENSG00000122012|ENST00000502798|SV2C	REV__ENSG00000122012|ENST00000502798|SV2C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.88409423828125	3	438.876417	1313.60742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.617	1	32.691	32.191	33.191	0.07378								0	0	0	0.32962	1	4953	4953		4.4062	0.28952	1		+		7631	8909	5136	5173	10389	10389					-0.03683765550931639
IMWNGSETKE	10	Unmodified	_IMWNGSETKE_					0	0	0			REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2781982421875	2	597.776613	1193.53867	0.10559	6.3116E-05	0.73498	0.00043936	0.84057	0.00050247	597.7769385621087	104.1	0.45154	104.1	103.87	104.33	0					76	42	3	0	0	0	0.11267	1	26832	26832		43.772	10.987	1	116410	+		7632	7759	5137	5174	10390	10390					-0.050354298505908446
IMWNGSETKE	10	Unmodified	_IMWNGSETKE_					0	0	0			REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7775268554688	2	597.776613	1193.53867	0.24326	0.00014542	0.32367	0.00019348	0.56693	0.0003389	597.776786038236	104.09	0.30608	104.13	103.87	104.17	0.03791					52	30	2	0	0	0	0.17573	1	26546	26546		36.506	3.7205	1	80937	+		7633	7759	5137	5174	10391	10391					-0.050354298505908446
IMYAMLNEK	9	Unmodified	_IMYAMLNEK_					0	0	0		ENST00000590311.5_1_17:67101582-67103939:-|nuORF;ENSG00000154262|ENST00000284425|ABCA6	ENST00000590311.5_1_17:67101582-67103939:-|nuORF	ENST00000590311.5_1_17:67101582-67103939:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3056030273438	2	556.77757	1111.54059	0.64806	0.00036082	3.3953	0.0018904	4.0434	0.0022512	556.779598900677	77.206	0.32771	77.241	76.935	77.263	0.034485					20	12	2	0	0	0	0.24749	1	18434	18434		9.3474	0	1	320080			7634	3550	5138	5175	10392	10392					-0.010720923663484427
IMYCKPGFY	9	Unmodified	_IMYCKPGFY_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8136596679688	2	561.261556	1120.50856	0.40282	0.00022609	2.2488	0.0012622	2.6516	0.0014882	561.2629732686535	83.875	0.47401	83.897	83.668	84.142	0.021744					27	16	3	0	0	0	0.2491	1	20487	20487		8.5933	0.68312	1	62308	+		7635	10469	5139	5176	10393	10393					-0.04687460049490255
INEKDEHINF	10	Unmodified	_INEKDEHINF_					0	0	0		tr|U7SSV7|U7SSV7_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01514PE=4SV=1	tr|U7SSV7|U7SSV7_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01514PE=4SV=1	tr|U7SSV7|U7SSV7_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01514PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8087768554688	2	629.806759	1257.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.3	1	63.3	62.8	63.8	0								0	0	0	0.33215	1	14366	14366		9.3831	0.63772	1				7636	13560	5140	5177	10394	10394					-0.019529961958596687
INFINFYD	8	Unmodified	_INFINFYD_					0	0	0		tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3037109375	2	523.2531	1044.49165	0.57456	0.00030064	-1.6265	-0.00085108	-1.052	-0.00055044	523.2521743783132	82.329	0.41605	82.329	82.118	82.534	0					20	14	2	0	0	0	0.3576	1	20150	20150		4.756	0	1	66082			7637	13630	5141	5178	10395	10395					-0.02881921339417204
INGHLNSLQS	10	Unmodified	_INGHLNSLQS_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2861938476562	2	541.783087	1081.55162	0.32646	0.00017687	0.52187	0.00028274	0.84832	0.00045961	541.7839904099415	56.465	0.5802	56.531	56.334	56.914	0.066448					46	20	3	0	0	0	0.37637	1	12127	12127		14.405	1.3629	1	280720			7638	3128	5142	5179	10396	10396					0.014107693237974672
INGVIGIETF	10	Unmodified	_INGVIGIETF_					0	0	0			REV__tr|U7STD6|U7STD6_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01373PE=3SV=1	REV__tr|U7STD6|U7STD6_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01373PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2824096679688	2	531.795132	1061.57571	0.37802	0.00020103	-1.1632	-0.00061856	-0.78513	-0.00041753	531.794539712335	62.17	0.24722	62.17	62.067	62.314	0					10	8	2	0	0	0	0.31585	1	14025	14025		10.824	1.4765	1	45946	+		7639	13167	5143	5180	10397	10397					0.04738609757464474
INHMLCLI	8	Unmodified	_INHMLCLI_					0	0	0			REV__ENST00000570086.5_1_16:81009992-81030554:-|nuORF	REV__ENST00000570086.5_1_16:81009992-81030554:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7554016113281	2	478.756441	955.498329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.032	1	42.032	41.532	42.532	0								0	0	0	0.38822	1	7906	7906		10.183	0.80027	1		+		7640	12519	5144	5181	10398	10398					0.01879977015937584
INIHHIVN	8	Unmodified	_INIHHIVN_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|112|3|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|112|3|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7490539550781	2	480.274701	958.534849	0.19542	9.3856E-05	-1.7156	-0.00082395	-1.5202	-0.00073009	480.2737566564911	47.423	0.64675	47.506	47.199	47.846	0.083092					41	25	2	0	0	0	0.3576	1	9408	9408		7.9102	0	1	123130	+		7641	12717	5145	5182	10399	10399					0.05392313228526291
INNYQRRCK	9	Unmodified	_INNYQRRCK_					0	0	0		ENSG00000169385|ENST00000304625|RNASE2	ENSG00000169385|ENST00000304625|RNASE2	ENSG00000169385|ENST00000304625|RNASE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8131713867188	2	597.811656	1193.60876	-0.62157	-0.00037158	2.1799	0.0013032	1.5583	0.00093158	597.813019115742	41.786	0.90561	41.786	41.459	42.365	0					53	32	2	0	0	0	0.32112	1	7864	7864		3.9444	0.66309	1	46509			7642	4337	5146	5183	10400	10400					0.01969913328525763
INPGCFPKQSI	11	Unmodified	_INPGCFPKQSI_					0	0	0			REV__ENSG00000258453|ENST00000556246|OR11H2	REV__ENSG00000258453|ENST00000556246|OR11H2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.87774658203125	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.833	1	27.915	27.415	28.415	0.082134								0	0	0	0.33835	1	3533	3533		0.45452	0	1		+		7643	11105	5147	5184	10401	10401					0.018577436626628696
INRKRLWNF	9	Unmodified	_INRKRLWNF_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5778503417969	3	416.243763	1245.70946	0.35167	0.00014638	-0.8603	-0.0003581	-0.50864	-0.00021172	416.5777477896683	51.369	0.74018	51.369	51.034	51.774	0					41	24	2	0	0	0	0.33208	1	10681	10681		2.4985	1.0434	1	102170			7644	3650	5148	5185	10402	10402					0.09643313373703677
INRKRLWNF	9	Unmodified	_INRKRLWNF_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.5782470703125	3	416.243763	1245.70946	-0.19378	-8.0659E-05	-0.17088	-7.1127E-05	-0.36466	-0.00015179	416.2437220500533	43.502	3.6434	43.591	42.753	46.397	0.088924					422	135	5	0	0	0	0.33028	1	9033	9033		2.7352	2.7352	1	2861300			7645	3650	5148	5185	10403	10403					0.09643313373703677
INRMYFPFKFF	11	Unmodified	_INRMYFPFKFF_					0	0	0		ENST00000474340.1_1_9:95003027-95004705:-|nuORF	ENST00000474340.1_1_9:95003027-95004705:-|nuORF	ENST00000474340.1_1_9:95003027-95004705:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.79461669921875	3	503.928564	1508.76386	0.32561	0.00016408	-0.95068	-0.00047907	-0.62507	-0.00031499	503.9274843202956	88.593	0.35846	88.625	88.413	88.772	0.032257					20	15	2	0	0	0	0.311	1	21919	21919		0.50596	0	1	61163			7646	6697	5149	5186	10404	10404					0.029831444102001115
INTKYNIIN	9	Unmodified	_INTKYNIIN_					0	0	0			REV__ENSG00000248746|ENST00000513398|ACTN3	REV__ENSG00000248746|ENST00000513398|ACTN3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8079833984375	2	546.806031	1091.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.39	1	103.39	102.89	103.89	0								0	0	0	0.24643	1	26574	26574		10.074	3.3508	1		+		7647	11075	5150	5187	10405	10405					0.05537414506034111
INVIFMPANTT	11	Unmodified	_INVIFMPANTT_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.8555297851562	2	610.820824	1219.62709	0.26939	0.00016455	0.41944	0.0002562	0.68883	0.00042075	610.8209198355197	101.7	0.90919	101.7	101.16	102.07	0					68	37	3	0	0	0	0.31032	1	26163	26163		7.609	1.8771	1	132080			7648	5596	5151	5188	10406	10406					0.026066104598612583
INVIFMPANTT	11	Unmodified	_INVIFMPANTT_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.8555297851562	2	610.820824	1219.62709	0.25357	0.00015489	1.4328	0.0008752	1.6864	0.0010301	610.8216875917553	102.12	0.28189	102.12	101.98	102.26	0					20	18	2	0	0	0	0.31032	1	26163	26163		7.609	1.8771	1	86469			7649	5596	5151	5188	10407	10407					0.026066104598612583
INWTVLYRRKH	11	Unmodified	_INWTVLYRRKH_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2642517089844	3	495.95276	1484.83645	0.1337	6.6309E-05	0.37386	0.00018542	0.50756	0.00025173	495.95276762418996	39.844	0.51907	39.933	39.695	40.214	0.088562					29	19	2	0	0	0	0.31086	1	7119	7119		3.3557	2.7289	1	47008			7650	1842	5152	5189	10408	10408					0.11342614527984551
INYKNILKD	9	Unmodified	_INYKNILKD_					0	0	0		tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7655639648438	2	560.821681	1119.62881	0.15601	8.7493E-05	0.36089	0.00020239	0.5169	0.00028989	560.8219892760064	39.778	0.28934	39.867	39.728	40.018	0.088566					17	10	2	0	0	0	0.25174	1	7117	7117		7.2892	0	1	21256			7651	13635	5153	5190	10409	10409					0.07377987540144204
INYTEPFVIY	10	Unmodified	_INYTEPFVIY_					0	0	0		ARSK|p.E271Rfs*3|1|0.34|ENSG00000164291|chr5:95586665-95586666|-/A|frameshift_variant;ENSG00000164291|ENST00000380009|ARSK	ARSK|p.E271Rfs*3|1|0.34|ENSG00000164291|chr5:95586665-95586666|-/A|frameshift_variant	ARSK|p.E271Rfs*3|1|0.34|ENSG00000164291|chr5:95586665-95586666|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.8088989257812	2	629.821347	1257.62814	0.49618	0.0003125	2.2098	0.0013918	2.706	0.0017043	630.324398187886	71.098	0.20956	71.157	71.108	71.318	0.058578					10	7	2	0	0	0	0.31499	1	16577	16577		18.146	13.817	1	68973			7652	54	5154	5191	10410	10410					0.009631481004362286
INYVKRHFD	9	Unmodified	_INYVKRHFD_					0	0	0			REV__ENSG00000100302|ENST00000216127|RASD2	REV__ENSG00000100302|ENST00000216127|RASD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7471313476562	2	596.317097	1190.61964	0.46706	0.00027852	-1.733	-0.0010334	-1.2659	-0.00075489	596.3157290397147	82.354	0.64936	82.354	82.142	82.792	0					29	22	2	0	0	0	0.25579	1	20133	20133		4.3292	0	1	103420	+		7653	8381	5155	5192	10411	10411					0.03195638974466419
IPAALHLYF	9	Unmodified	_IPAALHLYF_					0	0	0		tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.328125	2	522.797478	1043.5804	0.34967	0.0001828	-0.069927	-3.6558E-05	0.27974	0.00014625	523.2991064359409	78.423	0.28352	78.454	78.253	78.536	0.030159					13	9	2	0	0	0	0.237	1	18846	18846		14.582	1.0738	1	48349			7654	13529	5156	5193	10412	10412					0.060355386908895525
IPADIVFVL	9	Unmodified	_IPADIVFVL_					0	0	0		ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5	ENST00000429417.1_1_2:192746108-192746309:-|nuORF	ENST00000429417.1_1_2:192746108-192746309:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.3017272949219	2	493.799686	985.584819	0.44286	0.00021868	-0.0074685	-3.6879E-06	0.43539	0.00021499	493.7995730718217	94.823	0.9075	94.823	94.466	95.374	0					105	38	4	0	0	0	0.17247	5	23901	23901;23955;23997;24039;24085		21.747	10.106	1	1868200			7655	2554	5157	5194	10413;10414;10415;10416;10417	10413					0.09145003113803796
IPADIVFVL	9	Unmodified	_IPADIVFVL_					0	0	0		ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5	ENST00000429417.1_1_2:192746108-192746309:-|nuORF	ENST00000429417.1_1_2:192746108-192746309:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7998046875	2	493.799686	985.584819	0.34512	0.00017042	0.047725	2.3567E-05	0.39284	0.00019399	493.7996129856954	94.77	0.99933	94.808	94.477	95.476	0.038094					108	41	4	0	0	0	0.083504	5	23788	23745;23788;23830;23873;23921		36.044	12.896	1	1465000			7656	2554	5157	5194	10418;10419;10420;10421;10422	10419					0.09145003113803796
IPAEADFLL	9	Unmodified	_IPAEADFLL_					0	0	0		nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;ENSG00000003400|ENST00000286186|CASP10;nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.77117919921875	2	494.771126	987.527698	0.45164	0.00022346	-0.16433	-8.1304E-05	0.28731	0.00014215	494.7709879560139	82.051	0.55204	82.073	81.846	82.398	0.021866					41	19	3	0	0	0	0.22344	1	19902	19902		15.847	4.2069	1	208110			7657	330	5158	5195	10423	10423					0.033435358374163116
IPAEEENKL	9	Unmodified	_IPAEEENKL_					0	0	0		nc|ENSG00000008083|Q92833-3|JARID2;ENSG00000008083|ENST00000341776|JARID2	nc|ENSG00000008083|Q92833-3|JARID2	nc|ENSG00000008083|Q92833-3|JARID2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7742309570312	2	521.774396	1041.53424	0.00058723	3.064E-07	0.31108	0.00016231	0.31167	0.00016262	521.7742489426186	34.02	0.82866	34.02	33.739	34.568	0					68	31	3	0	0	0	0.1646	2	5519	5470;5519		22.658	8.4104	1	155780			7658	391	5159	5196	10424;10425	10425					0.015134289981460824
IPAEEENKL	9	Unmodified	_IPAEEENKL_					0	0	0		nc|ENSG00000008083|Q92833-3|JARID2;ENSG00000008083|ENST00000341776|JARID2	nc|ENSG00000008083|Q92833-3|JARID2	nc|ENSG00000008083|Q92833-3|JARID2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7742919921875	2	521.774396	1041.53424	-0.020436	-1.0663E-05	0.18778	9.7981E-05	0.16735	8.7318E-05	521.7742940767179	33.977	0.57982	34.053	33.865	34.445	0.076244					56	23	3	0	0	0	0.26104	1	5334	5334		11.495	3.3392	1	128630			7659	391	5159	5196	10426	10426					0.015134289981460824
IPAKLHNS	8	Unmodified	_IPAKLHNS_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7566223144531	2	440.255977	878.497401	0.348	0.00015321	-1.5514	-0.00068301	-1.2034	-0.0005298	440.2553448803108	56.579	0.96636	56.579	56.3	57.267	0					47	35	2	0	0	0	0.53423	1	12343	12343		5.2307	2.3415	1	139060			7660	1919	5160	5197	10427	10427					0.05329221962892916
IPAPAEKTPV	10	Unmodified	_IPAPAEKTPV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.798095703125	2	511.797675	1021.5808	0.32737	0.00016755	-0.53015	-0.00027133	-0.20279	-0.00010379	511.79757248762155	37.794	0.44943	37.879	37.716	38.165	0.084476					30	15	3	0	0	0	0.33001	1	6525	6525		19.362	3.2128	1	59808			7661	2263	5161	5198	10428	10428					0.07086913620094037
IPAPAEKTPV	10	Unmodified	_IPAPAEKTPV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	511.797675	1021.5808	0.32003	0.00016379	-0.1379	-7.0577E-05	0.18213	9.3215E-05	511.7975594745389	37.894	0.47793	37.894	37.729	38.207	0	0.0079071	0.00012042	NaN	19.362	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71342			7662	2263	5161	5198							0.07086913620094037
IPCEEGDKL	9	Unmodified	_IPCEEGDKL_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2419128417969	2	502.241875	1002.4692	0.1854	9.3114E-05	-0.080489	-4.0425E-05	0.10491	5.2689E-05	502.2418389132675	38.766	1.3502	38.766	38.426	39.777	0					117	50	4	0	0	0	0.0097877	3	6918	6918;6964;7007		67.838	31.794	1	514110			7663	3920	5162	5199	10429;10430;10431	10429					-0.03193888799353317
IPCEEGDKL	9	Unmodified	_IPCEEGDKL_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2419128417969	2	502.241875	1002.4692	0.27453	0.00013788	0.13198	6.6284E-05	0.4065	0.00020416	502.24194222824383	38.633	1.7994	38.72	38.435	40.234	0.08688					138	70	4	0	0	0	0.018465	3	6739	6739;6782;6826		59.368	30.882	1	421380			7664	3920	5162	5199	10432;10433;10434	10432					-0.03193888799353317
IPCEEGDKLQL	11	Unmodified	_IPCEEGDKLQL_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8129272460938	2	622.813196	1243.61184	0.23955	0.0001492	-0.31953	-0.00019901	-0.079982	-4.9814E-05	622.8132172299315	54.094	0.48195	54.094	53.841	54.322	0					24	16	2	0	0	0	0.29396	1	11562	11562		18.721	13.824	1	137230			7665	3920	5163	5200	10435	10435					-0.0002230112795587047
IPCSERQLIKP	11	Unmodified	_IPCSERQLIKP_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.361328125	2	642.360647	1282.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.29	1	108.31	107.81	108.81	0.022224								0	0	0	0.33362	1	27721	27721		2.9952	0	1				7666	4733	5164	5201	10436	10436					0.07669677133867481
IPDEADFLL	9	Unmodified	_IPDEADFLL_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.766357421875	2	516.76604	1031.51753	0.65069	0.00033626	-0.23491	-0.0001214	0.41578	0.00021486	516.7657743105293	83.712	0.73051	83.712	83.451	84.182	0					51	24	3	0	0	0	0.17247	1	20579	20579		21.747	0	1	352890			7667	106	5165	5202	10437	10437					0.003029281122053362
IPDEADFLL	9	Unmodified	_IPDEADFLL_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7662353515625	2	516.76604	1031.51753	0.3145	0.00016252	0.16089	8.3141E-05	0.47538	0.00024566	516.7660216981986	83.712	0.82774	83.734	83.414	84.241	0.021744					62	29	3	0	0	0	0.21398	1	20470	20470		16.942	0	1	343890			7668	106	5165	5202	10438	10438					0.003029281122053362
IPDEIIDMV	9	Unmodified	_IPDEIIDMV_					0	0	0		ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3037109375	2	522.767726	1043.5209	0.62948	0.00032907	0.84056	0.00043942	1.47	0.00076849	522.767981209175	82.129	0.38649	82.129	82.008	82.395	0					21	13	2	0	0	0	0.23975	1	20150	20150		10.074	4.8433	1	152550			7669	2471	5166	5203	10439	10439					0.0008785489455931383
IPDEIIDMV	9	Unmodified	_IPDEIIDMV_					0	0	0		ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038330078125	2	522.767726	1043.5209	0.25059	0.000131	1.0028	0.00052425	1.2534	0.00065526	522.7681871676454	82.185	0.35864	82.207	82.018	82.377	0.021866					18	12	2	0	0	0	0.2229	1	19969	19969		19.257	5.3509	1	152670			7670	2471	5166	5203	10440	10440					0.0008785489455931383
IPDEINDRVRF	11	Unmodified	_IPDEINDRVRF_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.5770263671875	3	458.577247	1372.70991	0.30622	0.00014042	-0.30647	-0.00014054	-0.00025472	-1.1681E-07	458.57705936663257	49.895	0.56063	49.895	49.733	50.294	0					58	19	4	0	0	0	0.36067	1	10292	10292		11.065	5.542	1	315890			7671	1831	5167	5204	10441	10441					0.03846643512201808
IPDEINDRVRF	11	Unmodified	_IPDEINDRVRF_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.5771484375	3	458.577247	1372.70991	0.11448	5.2497E-05	-0.070615	-3.2382E-05	0.043864	2.0115E-05	458.57710011552746	49.86	0.41479	49.933	49.766	50.181	0.07312					50	14	4	0	0	0	0.39158	2	10144	10136;10144		6.2344	1.9306	1	244060			7672	1831	5167	5204	10442;10443	10443					0.03846643512201808
IPDEKETRL	9	Unmodified	_IPDEKETRL_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15;ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8008422851562	2	550.800946	1099.58734	-0.035565	-1.9589E-05	-0.0586	-3.2277E-05	-0.094165	-5.1866E-05	550.800803681049	30.336	0.88378	30.336	30.117	31.001	0					90	45	3	0	0	0	0.23113	3	4424	4376;4424;4487		14.957	4.647	1	59051			7673	2741	5168	5205	10444;10445;10446	10445					0.041528067808030755
IPDEKETRL	9	Unmodified	_IPDEKETRL_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15;ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.80078125	2	550.800946	1099.58734	0.045526	2.5076E-05	0.051581	2.8411E-05	0.097107	5.3487E-05	550.800884309669	30.315	0.71943	30.391	30.175	30.894	0.075403					101	44	3	0	0	0	0.25517	2	4292	4246;4292		12.175	5.073	1	70783			7674	2741	5168	5205	10447;10448	10448					0.041528067808030755
IPDEVFDAV	9	Unmodified	_IPDEVFDAV_					0	0	0		LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant;ENSG00000066557|ENST00000370952|LRRC40	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.7505798339844	2	502.75039	1003.48623	0.34216	0.00017202	0.071117	3.5754E-05	0.41328	0.00020778	502.7503598590615	71.414	0.48851	71.414	71.181	71.669	0					31	16	2	0	0	0	0.10067	1	16836	16836		32.305	16.458	1	296210			7675	700	5169	5206	10449	10449					-0.015376449219047572
IPDEVFDAV	9	Unmodified	_IPDEVFDAV_					0	0	0		LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant;ENSG00000066557|ENST00000370952|LRRC40	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.750732421875	2	502.75039	1003.48623	0.3613	0.00018164	0.16911	8.5019E-05	0.5304	0.00026666	502.75045579509595	71.372	0.54736	71.431	71.133	71.68	0.058578					33	19	2	0	0	0	0.14091	1	16673	16673		25.399	12.868	1	298720			7676	700	5169	5206	10450	10450					-0.015376449219047572
IPDHPDLLL	9	Unmodified	_IPDHPDLLL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7904663085938	2	516.78985	1031.56515	0.54531	0.00028181	0.30817	0.00015926	0.85348	0.00044107	516.7897310386621	63.588	0.73367	63.588	63.345	64.078	0					34	25	2	0	0	0	0.18364	1	14525	14525		20.454	20.454	1	220760			7677	824	5170	5207	10451	10451					0.05062627103052364
IPDHPDLLL	9	Unmodified	_IPDHPDLLL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.790283203125	2	516.78985	1031.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.546	1	63.617	63.117	64.117	0.071018								0	0	0	0.15116	1	14299	14299		25.399	9.2502	1				7678	824	5170	5207	10452	10452					0.05062627103052364
IPDIIDEAAF	10	Unmodified	_IPDIIDEAAF_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.283935546875	2	552.284597	1102.55464	0.55165	0.00030467	-1.29	-0.00071246	-0.73837	-0.00040779	552.2837588457642	83.118	0.61291	83.118	82.872	83.485	0					51	20	3	0	0	0	0.095946	1	20459	20459		45.7	16.618	1	503430	+		7679	10120	5171	5208	10453	10453					0.007465996579412604
IPDIIDEAAF	10	Unmodified	_IPDIIDEAAF_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2843627929688	2	552.284597	1102.55464	0.45665	0.0002522	-1.1302	-0.00062417	-0.67352	-0.00037197	552.2838642100996	83.097	0.87231	83.119	82.823	83.696	0.021744					66	30	3	0	0	0	0.20801	1	20275	20275		32.786	8.7651	1	433490	+		7680	10120	5171	5208	10454	10454					0.007465996579412604
IPDILDGPEL	10	Unmodified	_IPDILDGPEL_					0	0	0		ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	ENSG00000068079|ENST00000415816|IFI35	ENSG00000068079|ENST00000415816|IFI35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2926025390625	2	541.292422	1080.57029	0.49965	0.00027046	0.030273	1.6387E-05	0.52993	0.00028684	541.2923667295987	83.253	0.78954	83.253	82.928	83.717	0					64	26	3	0	0	0	0.0013369	3	20468	20418;20468;20512		85.642	29.464	1	1759500			7681	721	5172	5209	10455;10456;10457	10456					0.03322886175010353
IPDILDGPEL	10	Unmodified	_IPDILDGPEL_					0	0	0		ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	ENSG00000068079|ENST00000415816|IFI35	ENSG00000068079|ENST00000415816|IFI35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2926635742188	2	541.292422	1080.57029	0.39335	0.00021292	0.15195	8.2247E-05	0.5453	0.00029517	541.2924071080205	83.254	0.71001	83.276	82.931	83.641	0.021751					62	24	3	0	0	0	0.010759	3	20249	20249;20298;20342		75.761	24.131	1	1767600			7682	721	5172	5209	10458;10459;10460	10458					0.03322886175010353
IPDILVEIK	9	Unmodified	_IPDILVEIK_					0	0	0		tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1	tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1	tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.3235473632812	2	520.323525	1038.6325	0.32842	0.00017089	-0.086952	-4.5243E-05	0.24147	0.00012564	520.3234295936048	76.016	1.0335	76.055	75.408	76.441	0.03923					82	57	2	0	0	0	0.20162	1	18104	18104		18.373	0	1	1056100			7683	13592	5173	5210	10461	10461					0.11472657313993295
IPDLDRHQL	9	Unmodified	_IPDLDRHQL_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8009643554688	2	553.80128	1105.58801	-0.41901	-0.00023205	0.18696	0.00010354	-0.23205	-0.00012851	553.8014937334442	41.546	0.95501	41.546	41.324	42.279	0					62	34	3	0	0	0	0.11383	1	7760	7760		29.437	11.064	1	202790			7684	4138	5174	5211	10462	10462					0.03943646220523078
IPDLDRHQL	9	Unmodified	_IPDLDRHQL_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8009033203125	2	553.80128	1105.58801	-0.17082	-9.4602E-05	-0.28895	-0.00016002	-0.45978	-0.00025462	553.8011772548139	41.452	0.65296	41.542	41.365	42.018	0.089764					60	26	4	0	0	0	0.14539	3	7592	7583;7592;7641		24.882	13.241	1	161330			7685	4138	5174	5211	10463;10464;10465	10464					0.03943646220523078
IPDLDWEL	8	Unmodified	_IPDLDWEL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7527770996094	2	500.752933	999.491313	0.23688	0.00011862	-0.21969	-0.00011001	0.017196	8.611E-06	500.7528163544198	87.253	1.1234	87.253	86.759	87.883	0					59	45	2	0	0	0	0.37883	2	21667	21620;21667		28.487	11.545	1	261780			7686	833	5175	5212	10466;10467	10467					-0.00845341059277871
IPDLDWEL	8	Unmodified	_IPDLDWEL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7521057128906	2	500.752933	999.491313	0.18487	9.2572E-05	-0.19657	-9.8431E-05	-0.0117	-5.8589E-06	500.75282147499775	86.977	0.74201	87.004	86.838	87.58	0.027573					69	31	3	0	0	0	0.46914	2	21430	21430;21480		16.942	4.4107	1	342460			7687	833	5175	5212	10468;10469	10468					-0.00845341059277871
IPDLVIYLS	9	Unmodified	_IPDLVIYLS_					0	0	0		nc|ENSG00000155085|Q5TCS8-1|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;AK9|p.M1006Vfs*17|1|0.26|ENSG00000155085|chr6:109546075-109546076|AT/-|frameshift_variant;nc|ENSG00000155085|Q5TCS8-6|AK9;ENSG00000155085|ENST00000424296|AK9;ENST00000466992.1_1_6:109871214-109940313:-|nuORF	nc|ENSG00000155085|Q5TCS8-1|AK9	nc|ENSG00000155085|Q5TCS8-1|AK9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.8013305664062	2	516.802426	1031.5903	0.44624	0.00023062	-2.4249	-0.0012532	-1.9786	-0.0010226	516.8010255970447	96.534	0.44229	96.574	96.398	96.841	0.039772					33	22	2	0	0	0	0.23216	1	24349	24349		14.838	4.0143	1	171450			7688	21	5176	5213	10470	10470					0.07576681905607074
IPDMPNIL	8	Unmodified	_IPDMPNIL_					0	0	0			REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7610778808594	2	456.746596	911.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.925	1	49.925	49.425	50.425	0								0	0	0	0.38723	1	10290	10290		15.768	1.1865	1		+		7689	10404	5177	5214	10471	10471					0.019359242768246077
IPDPLQHGNYL	11	Unmodified	_IPDPLQHGNYL_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8277587890625	2	633.827495	1265.64044	0.3368	0.00021347	-0.12758	-8.0866E-05	0.20921	0.00013261	633.8275175433781	60.474	0.75911	60.474	60.183	60.942	0					63	27	4	0	0	0	0.0071455	1	13534	13534		88.364	46.408	1	598140			7690	2685	5178	5215	10472	10472					0.018241845634747733
IPDPLQHGNYL	11	Unmodified	_IPDPLQHGNYL_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8279418945312	2	633.827495	1265.64044	0.19229	0.00012188	0.075121	4.7614E-05	0.26741	0.00016949	633.8276415155547	60.464	0.84216	60.538	60.239	61.081	0.073421					59	29	3	0	0	0	0.036661	2	13374	13320;13374		60.899	27.454	1	492580			7691	2685	5178	5215	10473;10474	10474					0.018241845634747733
IPDPSSVVASE	11	Unmodified	_IPDPSSVVASE_					0	0	0			REV__ENSG00000183549|ENST00000331849|ACSM5	REV__ENSG00000183549|ENST00000331849|ACSM5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7957153320312	2	550.777136	1099.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.242	1	38.328	37.828	38.828	0.08688								0	0	0	0.32823	1	6637	6637		4.897	1.6157	1		+		7692	7933	5179	5216	10475	10475					-0.0060689221002121485
IPDPSTWNL	9	Unmodified	_IPDPSTWNL_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2511596679688	2	521.763832	1041.51311	0.33458	0.00017457	-0.29082	-0.00015174	0.043754	2.2829E-05	521.7637513012127	74.781	0.32777	74.83	74.619	74.947	0.048546					17	11	2	0	0	0	0.17428	1	17724	17724		21.537	9.0054	1	79418			7693	2709	5180	5217	10476	10476					-0.00598536310712916
IPDPWSQYL	9	Unmodified	_IPDPWSQYL_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.25390625	2	559.779482	1117.54441	0.80374	0.00044992	0.59751	0.00033447	1.4012	0.00078439	559.7802799723937	84.894	0.40921	84.894	84.723	85.132	0					21	15	2	0	0	0	0.24277	1	20986	20986		14.405	4.3315	1	218850			7694	3525	5181	5218	10477	10477					-0.009659632766215509
IPDPWSQYL	9	Unmodified	_IPDPWSQYL_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2537841796875	2	559.779482	1117.54441	0.74954	0.00041957	0.42814	0.00023966	1.1777	0.00065924	559.7801510168102	84.901	0.44947	84.924	84.79	85.239	0.023125					26	17	2	0	0	0	0.24683	1	20828	20828		11.495	2.1116	1	171960			7695	3525	5181	5218	10478	10478					-0.009659632766215509
IPDQKYVTL	9	Unmodified	_IPDQKYVTL_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.8026733398438	2	538.802957	1075.59136	0.45573	0.00024555	-1.3555	-0.00073033	-0.89974	-0.00048478	538.8021943959959	50.908	0.6502	50.978	50.635	51.285	0.069874					45	24	2	0	0	0	0.24914	1	10476	10476		12.873	2.722	1	93387			7696	1135	5182	5219	10479	10479					0.05658896274530889
IPDQLGYLVL	10	Unmodified	_IPDQLGYLVL_					0	0	0		ENST00000474831.5_1_7:99746595-99751042:+|nuORF;ENST00000473459.5_1_7:99747130-99750374:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000474831.5_1_7:99746595-99751042:+|nuORF	ENST00000474831.5_1_7:99746595-99751042:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8268432617188	2	565.826432	1129.63831	0.1463	8.2779E-05	0.55682	0.00031507	0.70312	0.00039784	565.8268095981873	89.354	0.951	89.354	88.982	89.933	0					168	37	6	0	0	0	0.07941	3	22283	22242;22283;22330		49.554	19.329	1	3181700			7697	5146	5183	5220	10480;10481;10482	10481					0.0786775582566861
IPDQLGYLVL	10	Unmodified	_IPDQLGYLVL_					0	0	0		ENST00000474831.5_1_7:99746595-99751042:+|nuORF;ENST00000473459.5_1_7:99747130-99750374:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000474831.5_1_7:99746595-99751042:+|nuORF	ENST00000474831.5_1_7:99746595-99751042:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	565.826432	1129.63831	0.1921	0.00010869	0.7112	0.00040241	0.90329	0.00051111	565.8268103980456	89.31	0.8696	89.342	88.977	89.846	0.032257	-0.0060256	3.8617E-05	NaN	49.554	54	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2611100			7698	5146	5183	5220							0.0786775582566861
IPDSALATAL	10	Unmodified	_IPDSALATAL_					0	0	0			REV__nc|ENSG00000067182|P19438-3|TNFRSF1A	REV__nc|ENSG00000067182|P19438-3|TNFRSF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2739562988281	2	486.274032	970.533512	0.02587	1.258E-05	-0.29134	-0.00014167	-0.26547	-0.00012909	486.27379017813405	46.696	0.79723	46.696	46.574	47.372	0					71	36	3	0	0	0	0.17902	1	9301	9301		36.127	2.6821	1	418800	+		7699	8119	5184	5221	10483	10483					0.0470663434908829
IPDSALATAL	10	Unmodified	_IPDSALATAL_					0	0	0			REV__nc|ENSG00000067182|P19438-3|TNFRSF1A	REV__nc|ENSG00000067182|P19438-3|TNFRSF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2743835449219	2	486.274032	970.533512	-0.0041211	-2.004E-06	-0.14224	-6.9165E-05	-0.14636	-7.1169E-05	486.2739260758202	46.626	0.72648	46.709	46.57	47.297	0.083092					52	36	2	0	0	0	0.078033	2	9150	9150;9196		49.933	3.6191	1	423430	+		7700	8119	5184	5221	10484;10485	10484					0.0470663434908829
IPDSFFSSL	9	Unmodified	_IPDSFFSSL_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;SHKBP1|p.W205Cfs*48|1|0.21|ENSG00000160410|chr19:40580617-40580621|GGATC/-|frameshift_variant;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7526550292969	2	506.752933	1011.49131	0.32451	0.00016445	0.21732	0.00011013	0.54183	0.00027457	506.75276730949184	84.142	0.45711	84.163	83.838	84.295	0.021744					29	16	2	0	0	0	0.10833	2	20539	20539;20587		30.637	10.183	1	191940			7701	3760	5185	5222	10486;10487	10486					-0.01397341059282553
IPDSHEITL	9	Unmodified	_IPDSHEITL_					0	0	0		ENSG00000082068|ENST00000265107|WDR70;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;NIPBL-WDR70|1|fusion	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7687377929688	2	512.769114	1023.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.073	1	50.073	49.573	50.573	0								0	0	0	0.039919	1	10335	10335		52.268	17.867	1				7702	916	5186	5223	10488	10488					0.01285446343717922
IPDSHEITL	9	Unmodified	_IPDSHEITL_					0	0	0		ENSG00000082068|ENST00000265107|WDR70;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;NIPBL-WDR70|1|fusion	ENSG00000082068|ENST00000265107|WDR70	ENSG00000082068|ENST00000265107|WDR70	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.751220703125	2	512.769114	1023.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.283	1	50.283	49.783	50.783	0								0	0	0	0.039919	1	10399	10399		52.268	18.166	1				7703	916	5186	5223	10489	10489					0.01285446343717922
IPDSVSIQY	9	Unmodified	_IPDSVSIQY_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.26263427734375	2	511.263665	1020.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.368	1	61.441	60.941	61.941	0.073421								0	0	0	0.18435	1	13636	13636		20.454	1.0146	1				7704	4944	5187	5224	10490	10490					0.003340439694397901
IPDTENQTL	9	Unmodified	_IPDTENQTL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.755615234375	2	515.756204	1029.49785	-0.10718	-5.5277E-05	-0.44016	-0.00022701	-0.54733	-0.00028229	515.7558311296079	45.614	0.979	45.614	45.205	46.184	0					68	33	3	0	0	0	0.22861	2	8938	8938;9021		15.248	3.0078	1	117770			7705	2126	5188	5225	10491;10492	10491					-0.01571447898572842
IPDTENQTL	9	Unmodified	_IPDTENQTL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7556762695312	2	515.756204	1029.49785	0.095775	4.9396E-05	-0.14151	-7.2985E-05	-0.045737	-2.3589E-05	515.7559694838187	45.504	0.70538	45.59	45.179	45.885	0.085617					46	27	2	0	0	0	0.27929	1	8860	8860		9.3831	0	1	102470			7706	2126	5188	5225	10493	10493					-0.01571447898572842
IPDTENQTL	9	Unmodified	_IPDTENQTL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	515.756204	1029.49785	0.095775	4.9396E-05	-0.14151	-7.2985E-05	-0.045737	-2.3589E-05	515.7559694838187	45.504	0.70538	45.59	45.179	45.885	0.085617	-0.011808	0.00017514	NaN	15.248	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102470			7707	2126	5188	5225							-0.01571447898572842
IPEDLPFVL	9	Unmodified	_IPEDLPFVL_					0	0	0		PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7946166992188	2	521.794601	1041.57465	0.53374	0.0002785	-0.40729	-0.00021252	0.12645	6.5978E-05	521.7943928223489	92.3	1.535	92.3	91.763	93.298	0					175	57	6	0	0	0	0.033885	3	23169	23169;23215;23256		48.346	0	1	4260200			7708	5299	5189	5226	10494;10495;10496	10494					0.055523953885767696
IPEDLPFVL	9	Unmodified	_IPEDLPFVL_					0	0	0		PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7947998046875	2	521.794601	1041.57465	0.40326	0.00021042	-0.23787	-0.00012412	0.16539	8.6301E-05	521.7944877582237	92.204	1.4799	92.241	91.774	93.254	0.03653					155	55	5	0	0	0	0.045114	2	23051	23007;23051		44.407	0	1	3515700			7709	5299	5189	5226	10497;10498	10498					0.055523953885767696
IPEGNEKAL	9	Unmodified	_IPEGNEKAL_					0	0	0		ENSG00000143387|ENST00000271651|CTSK	ENSG00000143387|ENST00000271651|CTSK	ENSG00000143387|ENST00000271651|CTSK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7633361816406	2	485.763832	969.513111	-0.34244	-0.00016634	-0.32572	-0.00015822	-0.66816	-0.00032457	485.76352424170204	32.276	0.9678	32.276	31.937	32.905	0					98	42	3	0	0	0	0.064247	1	4981	4981		40.239	16.219	1	199500			7710	3155	5190	5227	10499	10499					0.027134636892810704
IPEGNEKAL	9	Unmodified	_IPEGNEKAL_					0	0	0		ENSG00000143387|ENST00000271651|CTSK	ENSG00000143387|ENST00000271651|CTSK	ENSG00000143387|ENST00000271651|CTSK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7635192871094	2	485.763832	969.513111	-0.28729	-0.00013956	-0.24153	-0.00011733	-0.52882	-0.00025688	485.7635757056004	32.175	0.81508	32.248	31.954	32.769	0.073784					100	41	3	0	0	0	0.2546	1	4840	4840		12.241	0.60036	1	155030			7711	3155	5190	5227	10500	10500					0.027134636892810704
IPEHLTATL	9	Unmodified	_IPEHLTATL_					0	0	0			REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7818908691406	2	497.782025	993.549496	-0.044131	-2.1968E-05	0.27303	0.00013591	0.2289	0.00011394	497.78206304990465	40.382	0.74415	40.472	40.237	40.981	0.089645					67	28	4	0	0	0	0.23216	1	7345	7345		14.838	2.5976	1	415860	+		7712	10029	5191	5228	10501	10501					0.052463405860066814
IPEKFQHIL	9	Unmodified	_IPEKFQHIL_					0	0	0		ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.826904296875	2	562.826766	1123.63898	0.32812	0.00018468	-0.16304	-9.1765E-05	0.16508	9.291E-05	562.8265869047632	46.987	0.86803	46.987	46.744	47.612	0					83	30	4	0	0	0	0.0042616	2	9396	9396;9442		100.09	62.117	1	899940			7713	6701	5192	5229	10502;10503	10502					0.08210595265381926
IPEKFQHIL	9	Unmodified	_IPEKFQHIL_					0	0	0		ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.826904296875	2	562.826766	1123.63898	0.33341	0.00018765	-0.12493	-7.0314E-05	0.20848	0.00011734	562.8266517519509	46.869	0.83586	46.952	46.741	47.577	0.083096					82	32	4	0	0	0	0.0040167	2	9230	9230;9275		103.42	51.151	1	796610			7714	6701	5192	5229	10504;10505	10504					0.08210595265381926
IPENNPVKL	9	Unmodified	_IPENNPVKL_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2951049804688	2	512.295299	1022.57605	-0.12047	-6.1715E-05	-0.20233	-0.00010365	-0.3228	-0.00016537	512.2951368559302	43.955	0.86348	43.955	43.638	44.502	0					65	29	3	0	0	0	0.064247	3	8458	8458;8508;8565		40.239	13.016	1	241810			7715	3703	5193	5230	10506;10507;10508	10506					0.06566029477335178
IPENNPVKL	9	Unmodified	_IPENNPVKL_					0	0	0		nc|ENSG00000158769|Q9Y624-2|F11R;ENSG00000158769|ENST00000368026|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	nc|ENSG00000158769|Q9Y624-2|F11R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.295166015625	2	512.295299	1022.57605	0.0081888	4.1951E-06	0.14164	7.2559E-05	0.14982	7.6754E-05	512.2952941329708	43.828	0.85307	43.917	43.658	44.512	0.088924					67	29	3	0	0	0	0.095436	2	8308	8308;8351		33.445	11.855	1	205510			7716	3703	5193	5230	10509;10510	10509					0.06566029477335178
IPENVDITL	9	Unmodified	_IPENVDITL_					0	0	0		ENSG00000163682|ENST00000295955|RPL9;ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENST00000514842.5_1_4:39459094-39460113:-|nuORF;RPL9-UGDH|2|fusion;RPL9-UGDH|1|fusion	ENSG00000163682|ENST00000295955|RPL9	ENSG00000163682|ENST00000295955|RPL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.27935791015625	2	507.279315	1012.54408	0.46669	0.00023674	-0.094317	-4.7845E-05	0.37237	0.0001889	507.27913066596574	70.408	0.65652	70.408	70.018	70.675	0					76	24	4	0	0	0	0.048027	1	16540	16540		43.772	0	1	930540			7717	3935	5194	5231	10511	10511					0.03830617003529824
IPEPASPQL	9	Unmodified	_IPEPASPQL_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;ENST00000489540.1_1_6:30671361-30671724:-|nuORF	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2610778808594	2	476.260925	950.507297	0.13313	6.3406E-05	0.19438	9.2578E-05	0.32752	0.00015598	476.26092633593163	55.501	0.53272	55.567	55.335	55.868	0.065128					39	19	3	0	0	0	0.091044	1	11837	11837		34.402	5.3201	1	294970			7718	2847	5195	5232	10512	10512					0.030063651776117695
IPEPIDPLF	9	Unmodified	_IPEPIDPLF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.7869873046875	2	520.786776	1039.559	0.74347	0.00038719	-0.49141	-0.00025592	0.25206	0.00013127	520.7861405071586	84.309	0.61264	84.309	83.931	84.544	0					65	37	2	0	0	0	0.024893	3	20732	20732;20768;20810		54.774	12.679	1	1743000			7719	3517;460	5196	5233	10513;10514;10515	10513					0.04080108871517041
IPEPIDPLF	9	Unmodified	_IPEPIDPLF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.787109375	2	520.786776	1039.559	0.36846	0.00019189	-0.032161	-1.6749E-05	0.3363	0.00017514	520.786521210709	84.314	0.48511	84.336	83.948	84.433	0.021744					62	24	4	0	0	0	0.011655	2	20562	20562;20610		64.236	13.381	1	1520200			7720	3517;460	5196	5233	10516;10517	10516					0.04080108871517041
IPEQSSLII	9	Unmodified	_IPEQSSLII_					0	0	0			REV__ENSG00000136449|ENST00000323776|MYCBPAP	REV__ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2536315917969	2	500.289682	998.564812	0.2106	0.00010536	-0.34837	-0.00017429	-0.13777	-6.8927E-05	500.28937062481714	50.301	0.30764	50.301	50.206	50.514	0					17	10	2	0	0	0	0.22912	1	10400	10400		18.146	1.0335	1	46856	+		7721	9243	5197	5234	10518	10518					0.06547207383209752
IPESDPADL	9	Unmodified	_IPESDPADL_					0	0	0		ENST00000520771.1_1_8:125565235-125568613:-|nuORF;nc|ENSG00000170873|O43312-2|MTSS1;TATDN1-MTSS1|1|fusion;nc|ENSG00000170873|O43312-4|MTSS1;ENSG00000170873|ENST00000518547|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1	ENST00000520771.1_1_8:125565235-125568613:-|nuORF	ENST00000520771.1_1_8:125565235-125568613:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7322692871094	2	478.732197	955.449842	-0.0051956	-2.4873E-06	0.44737	0.00021417	0.44217	0.00021168	478.73235860357033	51.622	0.77913	51.692	51.336	52.115	0.069878					49	28	2	0	0	0	0.23216	1	10694	10694		14.838	0.93222	1	133520			7722	4414	5198	5235	10519	10519					-0.02966521818621004
IPFADALDLF	10	Unmodified	_IPFADALDLF_					0	0	0		ENST00000490313.1_1_6:57244770-57299810:+|nuORF;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2976684570312	2	561.297507	1120.58046	0.24165	0.00013564	-0.13918	-7.812E-05	0.10248	5.7519E-05	561.2974581079255	103.5	0.47995	103.5	103.28	103.76	0					108	46	3	0	0	0	0.00025032	3	26606	26568;26606;26642		99.799	99.799	1	532880			7723	3278	5199	5236	10520;10521;10522	10521					0.0249949390022266
IPFADALDLF	10	Unmodified	_IPFADALDLF_					0	0	0		ENST00000490313.1_1_6:57244770-57299810:+|nuORF;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2976684570312	2	561.297507	1120.58046	0.48377	0.00027154	-0.32994	-0.0001852	0.15383	8.6343E-05	561.2973184031373	103.43	0.54629	103.47	103.27	103.81	0.03791					110	56	3	0	0	0	0.11192	3	26456	26384;26418;26456		43.858	43.858	1	560850			7724	3278	5199	5236	10523;10524;10525	10525					0.0249949390022266
IPFDGDLLSM	10	Oxidation (M)	_IPFDGDLLSM(Oxidation (M))_		IPFDGDLLSM(1)		IPFDGDLLSM(82)	0	0	1		VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.27099609375	2	562.270632	1122.52671	0.79743	0.00044837	-0.38734	-0.00021779	0.41009	0.00023058	562.2704335290767	80.093	1.3416	80.093	79.59	80.931	0					106	46	3	0	0	0	0.0034965	1	19487	19487		81.89	49.585	1	397990			7725	2983	5200	5237	10526	10526		192			-0.029650465937947956
IPFDGDLLSM	10	Oxidation (M)	_IPFDGDLLSM(Oxidation (M))_		IPFDGDLLSM(1)		IPFDGDLLSM(75)	0	0	1		VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2706298828125	2	562.270632	1122.52671	0.6095	0.00034271	-0.1911	-0.00010745	0.4184	0.00023525	562.2703775946973	80.03	1.7414	80.056	79.622	81.363	0.026428					133	61	3	0	0	0	0.011745	1	19336	19336		74.929	48.045	1	304530			7726	2983	5200	5237	10527	10527		192			-0.029650465937947956
IPFFPDLQI	9	Unmodified	_IPFFPDLQI_					0	0	0		nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-3|NR2F2	nc|ENSG00000185551|P24468-3|NR2F2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.8038330078125	2	545.302593	1088.59063	0.37409	0.00020399	0.49553	0.00027022	0.86962	0.00047421	545.8043827458732	101.17	0.40851	101.17	101	101.4	0					61	22	3	0	0	0	0.32112	1	25873	25873		3.9444	0.66309	1	221360			7727	4637	5201	5238	10528	10528					0.049881016254630595
IPFFPDLQI	9	Unmodified	_IPFFPDLQI_					0	0	0		nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-3|NR2F2	nc|ENSG00000185551|P24468-3|NR2F2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.8045654296875	2	545.302593	1088.59063	0.4679	0.00025515	0.29607	0.00016145	0.76396	0.00041659	545.8042774199712	101.12	0.48682	101.16	100.95	101.44	0.042831					66	28	3	0	0	0	0.19398	2	25742	25701;25742		19.257	5.7866	1	114940			7728	4637	5201	5238	10529;10530	10530					0.049881016254630595
IPFFPDLQI	9	Unmodified	_IPFFPDLQI_					0	0	0		nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-3|NR2F2	nc|ENSG00000185551|P24468-3|NR2F2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	545.302593	1088.59063	0.37409	0.00020399	0.49553	0.00027022	0.86962	0.00047421	545.8043827458732	101.17	0.40851	101.17	101	101.4	0	0.0036802	0.00015023	NaN	19.257	61	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221360			7729	4637	5201	5238							0.049881016254630595
IPFIHLPEI	9	Unmodified	_IPFIHLPEI_					0	0	0		nc|ENSG00000163053|Q7RTX9-2|SLC16A14;ENSG00000163053|ENST00000295190|SLC16A14	nc|ENSG00000163053|Q7RTX9-2|SLC16A14	nc|ENSG00000163053|Q7RTX9-2|SLC16A14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.330078125	2	539.81841	1077.62227	0.56563	0.00030534	-0.0092767	-5.0077E-06	0.55635	0.00030033	539.8183279365572	82.578	0.66906	82.578	82.259	82.928	0					48	23	3	0	0	0	0.25209	1	20324	20324		12.532	0	1	511750			7730	3873	5202	5239	10531	10531					0.08656094379398382
IPFLIKKFFF	10	Unmodified	_IPFLIKKFFF_					0	0	0		ENST00000460140.5_1_2:202050494-202070750:+|nuORF	ENST00000460140.5_1_2:202050494-202070750:+|nuORF	ENST00000460140.5_1_2:202050494-202070750:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.9328308105469	3	433.933644	1298.7791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.372	1	91.408	90.908	91.908	0.035446								0	0	0	0.33959	1	22764	22764		0.69767	0.07084	1				7731	6601	5203	5240	10532	10532					0.14166379269727258
IPGTGVSLLV	10	Unmodified	_IPGTGVSLLV_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.23138427734375	2	478.294768	954.574983	0.29274	0.00014001	0.59959	0.00028678	0.89232	0.00042679	478.2948611123389	54.078	0.65479	54.078	53.813	54.467	0					60	23	4	0	0	0	0.26901	1	11507	11507		32.305	3.8186	1	1121000			7732	1562	5204	5241	10533	10533					0.09587815108420727
IPHMDIEAL	9	Oxidation (M)	_IPHM(Oxidation (M))DIEAL_		IPHM(1)DIEAL		IPHM(74)DIEAL	0	0	1		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.765625	2	527.765517	1053.51648	0.3566	0.0001882	-0.12522	-6.6086E-05	0.23139	0.00012212	527.7653149836807	47.713	1.4585	47.713	47.372	48.83	0					100	49	4	0	0	0	0.0076571	1	9626	9626		74.423	26.674	1	1557200			7733	5400	5205	5242	10534	10534		307			-0.008136095283589384
IPHMDIEAL	9	Oxidation (M)	_IPHM(Oxidation (M))DIEAL_		IPHM(1)DIEAL		IPHM(64)DIEAL	0	0	1		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7655029296875	2	527.765517	1053.51648	0.18241	9.627E-05	2.1796	0.0011503	2.362	0.0012466	527.7654722517267	52.169	2.5678	52.169	51.448	54.016	0					238	94	5	0	0	0	0.011655	3	10968	10923;10968;11031		64.236	38.621	1	817120			7734	5400	5205	5242	10535;10536;10537	10536		307			-0.008136095283589384
IPHMDIEAL	9	Oxidation (M)	_IPHM(Oxidation (M))DIEAL_		IPHM(1)DIEAL		IPHM(61)DIEAL	0	0	1		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7657470703125	2	527.765517	1053.51648	0.47279	0.00024952	-0.28507	-0.00015045	0.18772	9.9072E-05	527.7652752904718	47.625	1.3804	47.705	47.373	48.754	0.080032					108	43	4	0	0	0	0.015682	1	9454	9454		61.357	26.956	1	1437400			7735	5400	5205	5242	10538	10538		307			-0.008136095283589384
IPHMDIEAL	9	Oxidation (M)	_IPHM(Oxidation (M))DIEAL_		IPHM(1)DIEAL		IPHM(59)DIEAL	0	0	1		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7655639648438	2	527.765517	1053.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.124	1	52.191	51.691	52.691	0.067173								0	0	0	0.027871	1	10824	10824		58.679	32.338	1				7736	5400	5205	5242	10539	10539		307			-0.008136095283589384
IPHMDIEAL	9	Oxidation (M)	_IPHM(Oxidation (M))DIEAL_		IPHM(1)DIEAL		IPHM(48)DIEAL	0	0	1		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7655029296875	2	527.765517	1053.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.286	1	52.353	51.853	52.853	0.067173								0	0	0	0.05151	1	10873	10873		48.346	16.229	1				7737	5400	5205	5242	10540	10540		307			-0.008136095283589384
IPHMDIEAL	9	Unmodified	_IPHMDIEAL_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.7680053710938	2	519.76806	1037.52157	0.4298	0.0002234	0.07934	4.1238E-05	0.50914	0.00026464	519.7680352969307	62.625	0.66502	62.625	62.392	63.057	0					62	24	4	0	0	0	0.033885	1	14167	14167		48.346	6.5062	1	732050			7738	5400	5205	5243	10541	10541					0.004306943342726299
IPHMDIEAL	9	Unmodified	_IPHMDIEAL_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.7682495117188	2	519.76806	1037.52157	0.33134	0.00017222	-0.037614	-1.9551E-05	0.29373	0.00015267	519.7679698828126	62.511	0.65554	62.584	62.335	62.991	0.072701					51	22	4	0	0	0	0.037705	1	13987	13987		46.021	17.534	1	934350			7739	5400	5205	5243	10542	10542					0.004306943342726299
IPIFTDVAL	9	Unmodified	_IPIFTDVAL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7894592285156	2	494.789318	987.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.818	1	87.818	87.318	88.318	0								0	0	0	0.0048139	1	21845	21845		74.423	16.951	1				7740	2294	5206	5244	10543	10543					0.06980412734139918
IPIFTDVAL	9	Unmodified	_IPIFTDVAL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.78936767578125	2	494.789318	987.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.869	1	87.869	87.369	88.369	0								0	0	0	0.001237	1	21860	21860		85.357	24.967	1				7741	2294	5206	5244	10544	10544					0.06980412734139918
IPIFTDVAL	9	Unmodified	_IPIFTDVAL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7893981933594	2	494.789318	987.564084	0.38077	0.0001884	-0.035146	-1.739E-05	0.34563	0.00017101	494.7891889737003	87.788	0.99168	87.818	87.311	88.303	0.030037					83	36	4	0	0	0	0.0076571	1	21663	21663		74.423	16.951	1	1317000			7742	2294	5206	5244	10545	10545					0.06980412734139918
IPIFTEEFL	9	Unmodified	_IPIFTEEFL_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.8001708984375	2	554.799883	1107.58521	0.73539	0.000408	0.40781	0.00022625	1.1432	0.00063425	554.8001381776708	92.696	0.38342	92.696	92.513	92.897	0					23	14	2	0	0	0	0.10833	1	23321	23321		30.637	3.7529	1	126050			7743	3009	5207	5245	10546	10546					0.03572378043008939
IPIGIDKAL	9	Unmodified	_IPIGIDKAL_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2972412109375	2	470.29731	938.580068	0.23729	0.0001116	0.011195	5.2649E-06	0.24848	0.00011686	470.29716836167046	57.282	0.93421	57.282	57.065	57.999	0					79	32	5	0	0	0	0.0034419	3	12511	12511;12561;12605		106.94	21.944	1	1777000			7744	1106	5208	5246	10547;10548;10549	10547					0.10832118971029558
IPIGIDKAL	9	Unmodified	_IPIGIDKAL_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2973937988281	2	470.29731	938.580068	0.15651	7.3605E-05	0.041648	1.9587E-05	0.19816	9.3192E-05	470.2972354402435	57.234	0.75883	57.302	57.043	57.802	0.068375					66	28	3	0	0	0	0.0043591	2	12391	12391;12442		96.367	21.944	1	1213600			7745	1106	5208	5246	10550;10551	10550					0.10832118971029558
IPIHADPRL	9	Unmodified	_IPIHADPRL_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.30322265625	2	516.303458	1030.59236	-0.2869	-0.00014813	0.1456	7.5173E-05	-0.1413	-7.2952E-05	516.3034455133389	40.755	1.1034	40.755	40.505	41.609	0					87	39	4	0	0	0	0.16392	2	7535	7535;7580		22.736	7.898	1	587980			7746	4437	5209	5247	10552;10553	10552					0.07829155434069435
IPIHADPRL	9	Unmodified	_IPIHADPRL_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3034057617188	2	516.303458	1030.59236	-0.15404	-7.953E-05	0.13493	6.9665E-05	-0.019106	-9.8643E-06	516.3034400282041	40.663	0.87209	40.752	40.493	41.365	0.089645					80	32	4	0	0	0	0.098463	2	7377	7334;7377		32.786	12.332	1	574290			7747	4437	5209	5247	10554;10555	10555					0.07829155434069435
IPILYEHQL	9	Unmodified	_IPILYEHQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.31884765625	2	563.318774	1124.623	0.17391	9.7966E-05	0.10973	6.1813E-05	0.28364	0.00015978	563.3186426928781	59.349	1.4709	59.349	59.062	60.533	0					139	55	4	0	0	0	8.6872E-13	1	13142	13142		183.04	18.524	1	2016500			7748	2006	5210	5248	10556	10556					0.06566889028476908
IPILYEHQL	9	Unmodified	_IPILYEHQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3187866210938	2	563.318774	1124.623	0.22112	0.00012456	0.0097161	5.4732E-06	0.23084	0.00013003	563.3186042563229	59.232	1.5104	59.304	59.067	60.577	0.072338					131	57	4	0	0	0	3.513E-06	3	13003	12954;13003;13054		155.03	41.294	1	1652300			7749	2006	5210	5248	10557;10558;10559	10558					0.06566889028476908
IPIMYEDAI	9	Unmodified	_IPIMYEDAI_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7858276367188	2	532.770268	1063.52598	0.60169	0.00032056	0.15899	8.4707E-05	0.76068	0.00040527	532.7702076773317	92.542	1.2426	92.542	91.763	93.006	0					111	46	3	0	0	0	0.25209	2	23216	23216;23266		12.532	1.7076	1	159930	+		7750	10155	5211	5249	10560;10561	10560					-0.0032384124283453275
IPIMYEDAI	9	Unmodified	_IPIMYEDAI_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7705688476562	2	532.770268	1063.52598	0.67745	0.00036092	0.016976	9.0446E-06	0.69442	0.00036997	532.7701282790571	92.545	1.2185	92.581	91.829	93.048	0.036522					101	43	3	0	0	0	0.25209	1	23118	23118		12.532	1.7076	1	191200	+		7751	10155	5211	5249	10562	10562					-0.0032384124283453275
IPISIEFVF	9	Unmodified	_IPISIEFVF_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.80517578125	2	532.804968	1063.59538	0.67932	0.00036194	0.17505	9.3269E-05	0.85437	0.00045521	532.8048773239332	99.257	0.63211	99.3	98.988	99.62	0.042831					156	44	5	0	0	0	0.083504	2	25206	25167;25206		36.044	16.605	1	769020			7752	1894	5212	5250	10563;10564	10564					0.06612985768242652
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7923583984375	2	490.792392	979.570232	0.44828	0.00022001	-0.50344	-0.00024708	-0.055159	-2.7072E-05	490.7920310039341	57.475	0.55843	57.475	57.241	57.799	0					45	19	3	0	0	0	0.0012363	1	12604	12604		120.45	31.024	1	548270			7753	7634	5213	5251	10565	10565					0.07962930965663872
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7924499511719	2	490.792392	979.570232	0.33987	0.00016681	-0.3725	-0.00018282	-0.032632	-1.6016E-05	490.7921168445672	57.409	0.60432	57.478	57.265	57.869	0.068375					48	23	3	0	0	0	0.0064512	1	12441	12441		78.149	13.913	1	323500			7754	7634	5213	5251	10566	10566					0.07962930965663872
IPISWTCDL	9	Unmodified	_IPISWTCDL_					0	0	0		LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.262451171875	2	524.26261	1046.51067	0.23514	0.00012328	-0.22509	-0.00011801	0.010055	5.2715E-06	524.2624966565985	89.139	0.18866	89.139	89.03	89.219	0					10	7	2	0	0	0	0.32112	1	22250	22250		3.9444	0	1	40351			7755	2215	5214	5252	10567	10567					-0.010727080400556588
IPKPNIFLP	9	Unmodified	_IPKPNIFLP_					0	0	0			REV__ENSG00000143753|ENST00000323699|DEGS1	REV__ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.326416015625	2	519.820953	1037.62735	0.38337	0.00019928	0.056083	2.9153E-05	0.43945	0.00022844	519.8211195961259	78.447	1.2033	78.477	77.995	79.198	0.030159					159	41	5	0	0	0	0.2796	1	18751	18751		9.3474	1.4373	1	21450000	+		7756	9474	5215	5253	10568	10568					0.11004398242016578
IPKSTLSYIS	10	Unmodified	_IPKSTLSYIS_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.8164672851562	2	554.816064	1107.61758	0.098453	5.4623E-05	1.1641	0.00064587	1.2626	0.00070049	554.8166735628971	107.41	0.42253	107.41	107.16	107.58	0					73	39	3	0	0	0	0.4101	1	27698	27698		10.8	2.0541	1	169990	+		7757	7995	5216	5254	10569	10569					0.06807165446002728
IPLEEGELEL	10	Unmodified	_IPLEEGELEL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3034057617188	2	571.302987	1140.59142	0.3145	0.00017968	0.48962	0.00027972	0.80412	0.0004594	571.3031024334961	76.421	0.89098	76.421	76.195	77.086	0					107	32	4	0	0	0	0.0010827	4	18384	18334;18384;18436;18488		88.954	39.021	1	2659500			7758	1753	5217	5255	10570;10571;10572;10573	10571					0.026748514838800475
IPLEEGELEL	10	Unmodified	_IPLEEGELEL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.3032836914062	2	571.302987	1140.59142	0.34199	0.00019538	0.43881	0.00025069	0.7808	0.00044607	571.303043943917	76.389	0.94024	76.428	76.183	77.123	0.03923					111	34	4	0	0	0	0.0072434	4	18205	18161;18205;18248;18291		78.728	30.979	1	3107600			7759	1753	5217	5255	10574;10575;10576;10577	10575					0.026748514838800475
IPLGLDLKNLR	11	Unmodified	_IPLGLDLKNLR_					0	0	0		SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant;ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.39306640625	2	626.392805	1250.77106	-0.24215	-0.00015168	1.7552	0.0010994	1.513	0.00094774	626.3936373725395	108.12	0.14201	108.12	108.03	108.17	0					43	20	3	0	0	0	0.40693	1	27877	27877		2.7352	1.2533	1	15088000			7760	667	5218	5256	10578	10578					0.15570200282309088
IPLHEDLL	8	Unmodified	_IPLHEDLL_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2710876464844	2	475.271293	948.528032	-0.019728	-9.3763E-06	0.065075	3.0928E-05	0.045347	2.1552E-05	475.2711752572204	56.385	0.35885	56.385	56.242	56.6	0					21	12	2	0	0	0	0.34579	1	12272	12272		23.148	5.0021	1	183070			7761	4559	5219	5257	10579	10579					0.05170955557275647
IPLHEDLL	8	Unmodified	_IPLHEDLL_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	475.271293	948.528032	-0.092316	-4.3875E-05	-0.20768	-9.8706E-05	-0.3	-0.00014258	475.27083760847404	56.324	0.31696	56.39	56.254	56.571	0.066448	0.0028951	-0.00020225	NaN	23.148	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136580			7762	4559	5219	5257							0.05170955557275647
IPLHEELL	8	Unmodified	_IPLHEELL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.27911376953125	2	482.279118	962.543683	0.14023	6.7631E-05	0.29647	0.00014298	0.4367	0.00021061	482.2790978513341	55.511	0.46743	55.577	55.374	55.842	0.065132					32	16	3	0	0	0	0.41225	1	11840	11840		24.674	0	1	168520			7763	3966	5220	5258	10580	10580					0.06091242074330694
IPLYIDDTL	9	Unmodified	_IPLYIDDTL_					0	0	0		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7894897460938	2	531.789515	1061.56448	0.75052	0.00039912	-0.4281	-0.00022766	0.32243	0.00017146	531.7891682447599	79.892	0.60408	79.892	79.682	80.286	0					47	20	3	0	0	0	0.0076571	2	19416	19416;19470		74.423	45.936	1	561390			7764	5760	5221	5259	10581;10582	10581					0.03615787663306946
IPLYIDDTL	9	Unmodified	_IPLYIDDTL_					0	0	0		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7899169921875	2	531.789515	1061.56448	0.56972	0.00030297	-0.063877	-3.3969E-05	0.50584	0.000269	531.7894050321179	79.884	0.6207	79.911	79.681	80.302	0.026436					47	21	3	0	0	0	0.0037915	2	19251	19251;19299		104.8	68.755	1	426760			7765	5760	5221	5259	10583;10584	10583					0.03615787663306946
IPMDPEHVEL	10	Oxidation (M)	_IPM(Oxidation (M))DPEHVEL_		IPM(1)DPEHVEL		IPM(50)DPEHVEL	0	0	1		ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2874755859375	2	598.286814	1194.55907	0.13528	8.0939E-05	0.83694	0.00050073	0.97222	0.00058167	598.2876373029944	51.307	0.50495	51.307	51.092	51.596	0					43	16	3	0	0	0	0.07941	3	10742	10691;10700;10742		49.554	37.314	1	448530			7766	2271	5222	5260	10585;10586;10587	10587		137			-0.03042259190783625
IPMDPEHVEL	10	Oxidation (M)	_IPM(Oxidation (M))DPEHVEL_		IPM(1)DPEHVEL		IPM(56)DPEHVEL	0	0	1		ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.286865234375	2	598.286814	1194.55907	0.19732	0.00011805	0.13965	8.3551E-05	0.33697	0.0002016	598.2870646100993	53.013	1.197	53.013	52.616	53.813	0					93	46	3	0	0	0	0.057777	1	11227	11227		55.503	39.354	1	301180			7767	2271	5222	5260	10588	10588		137			-0.03042259190783625
IPMDPEHVEL	10	Oxidation (M)	_IPM(Oxidation (M))DPEHVEL_		IPM(1)DPEHVEL		IPM(60)DPEHVEL	0	0	1		ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.287841796875	2	598.286814	1194.55907	0.18739	0.00011211	0.55734	0.00033345	0.74473	0.00044556	598.2873226403999	51.226	0.63533	51.296	51.049	51.684	0.069878					56	24	3	0	0	0	0.041153	2	10535	10535;10584		60.074	35.083	1	290260			7768	2271	5222	5260	10589;10590	10589		137			-0.03042259190783625
IPMDPEHVEL	10	Oxidation (M)	_IPM(Oxidation (M))DPEHVEL_		IPM(1)DPEHVEL		IPM(44)DPEHVEL	0	0	1		ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2864990234375	2	598.286814	1194.55907	0.28122	0.00016825	0.078506	4.6969E-05	0.35972	0.00021522	598.286935383919	52.973	0.99511	53.038	52.722	53.717	0.06543					92	47	3	0	0	0	0.11267	1	11068	11068		43.772	32.973	1	273700			7769	2271	5222	5260	10591	10591		137			-0.03042259190783625
IPMLWDEF	8	Unmodified	_IPMLWDEF_					0	0	0			REV__ENST00000596847.5_1_19:12790379-12790748:-|nuORF	REV__ENST00000596847.5_1_19:12790379-12790748:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3140258789062	2	525.751879	1049.4892	0.4834	0.00025415	-0.2968	-0.00015604	0.18661	9.811E-05	525.7517816758265	70.603	0.26806	70.663	70.596	70.864	0.060562					17	10	2	0	0	0	0.3576	1	16472	16472		5.2307	0.90143	1	89893	+		7770	8339	5223	5261	10592	10592					-0.033560930687599466
IPMPDFDL	8	Oxidation (M)	_IPM(Oxidation (M))PDFDL_		IPM(1)PDFDL		IPM(54)PDFDL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2282409667969	2	482.228236	962.44192	-0.2164	-0.00010435	0.35502	0.0001712	0.13862	6.6847E-05	482.2282866802216	73.318	0.48643	73.318	73.084	73.571	0					25	17	2	0	0	0	0.10563	1	17409	17409		53.576	23.351	1	308360			7771	2279	5224	5262	10593	10593		140			-0.04080372339740279
IPMPDFDL	8	Oxidation (M)	_IPM(Oxidation (M))PDFDL_		IPM(1)PDFDL		IPM(44)PDFDL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2283630371094	2	482.228236	962.44192	-0.073093	-3.5248E-05	0.3349	0.0001615	0.26181	0.00012625	482.2283639648365	73.255	0.37917	73.308	73.062	73.441	0.052574					25	14	3	0	0	0	0.17432	1	17226	17226		44.407	26.272	1	196040			7772	2279	5224	5262	10594	10594		140			-0.04080372339740279
IPMPDFDL	8	Unmodified	_IPMPDFDL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2308044433594	2	474.230779	946.447005	0.40594	0.00019251	-0.22458	-0.00010651	0.18136	8.6004E-05	474.2305677762955	84.064	0.31342	84.064	83.841	84.154	0					17	10	2	0	0	0	0.50159	1	20721	20721		12.532	6.1774	1	93637			7773	2279	5224	5263	10595	10595					-0.02836068477131448
IPMPDFDL	8	Unmodified	_IPMPDFDL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.79925537109375	2	474.230779	946.447005	0.070032	3.3211E-05	0.43023	0.00020403	0.50026	0.00023724	474.23092609863085	84.011	0.37533	84.033	83.866	84.241	0.021744					22	13	2	0	0	0	0.35492	1	20511	20511		16.942	8.349	1	73393			7774	2279	5224	5263	10596	10596					-0.02836068477131448
IPMPTPPW	8	Unmodified	_IPMPTPPW_					0	0	0		ENST00000462730.5_1_X:48664727-48664964:+|nuORF	ENST00000462730.5_1_X:48664727-48664964:+|nuORF	ENST00000462730.5_1_X:48664727-48664964:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7436828613281	2	469.743857	937.47316	0.13447	6.3166E-05	0.28436	0.00013358	0.41883	0.00019674	469.74390315003615	58.024	0.44926	58.024	57.768	58.217	0					40	15	3	0	0	0	0.38286	1	12724	12724		28.173	6.4266	1	850790			7775	6620	5225	5264	10597	10597					0.0019224548501597383
IPMPTPPW	8	Unmodified	_IPMPTPPW_					0	0	0		ENST00000462730.5_1_X:48664727-48664964:+|nuORF	ENST00000462730.5_1_X:48664727-48664964:+|nuORF	ENST00000462730.5_1_X:48664727-48664964:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	469.743857	937.47316	0.13447	6.3166E-05	0.28436	0.00013358	0.41883	0.00019674	469.74390315003615	58.024	0.44926	58.024	57.768	58.217	0	-0.00039672	-8.1697E-05	NaN	28.173	40	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850790			7776	6620	5225	5264							0.0019224548501597383
IPMPTPPW	8	Unmodified	_IPMPTPPW_					0	0	0		ENST00000462730.5_1_X:48664727-48664964:+|nuORF	ENST00000462730.5_1_X:48664727-48664964:+|nuORF	ENST00000462730.5_1_X:48664727-48664964:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	469.743857	937.47316	0.021148	9.9339E-06	0.45525	0.00021385	0.4764	0.00022378	469.74392599244936	57.957	0.63966	58.025	57.724	58.364	0.068371	0.00039672	7.8854E-05	NaN	28.173	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	700180			7777	6620	5225	5264							0.0019224548501597383
IPNEETILNAL	11	Unmodified	_IPNEETILNAL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.2954711914062	2	613.834985	1225.65542	0.45867	0.00028155	-0.35098	-0.00021544	0.10769	6.6102E-05	613.8347631632213	81.75	0.43862	81.75	81.515	81.954	0					31	14	3	0	0	0	0.31022	1	20043	20043		8.9762	2.3459	1	237630			7778	1641	5226	5265	10598	10598					0.05161631640839914
IPNEETILNAL	11	Unmodified	_IPNEETILNAL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	613.834985	1225.65542	0.17482	0.00010731	-0.094536	-5.8029E-05	0.080289	4.9284E-05	613.8349241631084	81.741	0.44652	81.763	81.523	81.969	0.021866	0.0062829	0.00015841	NaN	8.9762	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218400			7779	1641	5226	5265							0.05161631640839914
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.297607421875	2	510.297842	1018.58113	-0.066016	-3.3688E-05	-0.32617	-0.00016644	-0.39218	-0.00020013	510.29763029721914	58.885	0.65415	58.885	58.682	59.336	0					44	23	3	0	0	0	0.0089808	1	13026	13026		70.332	28.376	1	503290			7780	1131	5227	5266	10599	10599					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7712707519531	2	510.297842	1018.58113	0.1833	9.3539E-05	-0.67652	-0.00034523	-0.49321	-0.00025169	510.29744529406605	58.783	0.67201	58.854	58.627	59.299	0.070477					41	25	3	0	0	0	0.18934	1	12867	12867		28.495	9.0555	1	289830			7781	1131	5227	5266	10600	10600					0.07258333339939327
IPNENELQF	9	Unmodified	_IPNENELQF_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2394409179688	2	552.272021	1102.52949	0.62147	0.00034322	-0.20687	-0.00011425	0.41461	0.00022898	552.2717810238614	63.872	0.53347	63.872	63.762	64.296	0					30	18	2	0	0	0	0.2418	1	14540	14540		13.906	1.6654	1	166620			7782	366	5228	5267	10601	10601					-0.017674551446361875
IPNPQERTL	9	Unmodified	_IPNPQERTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.25390625	2	534.29583	1066.57711	0.55153	0.00029468	-0.4906	-0.00026213	0.06093	3.2555E-05	534.2955758512484	38.09	0.75288	38.174	37.87	38.623	0.08493					56	27	3	0	0	0	0.22715	1	6634	6634		20.581	6.1756	1	278820			7783	1108	5229	5268	10602	10602					0.04648243846236255
IPNPQERTL	9	Unmodified	_IPNPQERTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	534.29583	1066.57711	0.38852	0.00020758	-0.29568	-0.00015798	0.092839	4.9603E-05	534.29562955447	38.19	0.8526	38.19	37.864	38.716	0	0.0075802	7.9526E-05	NaN	20.581	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328240			7784	1108	5229	5268							0.04648243846236255
IPNPQERTLTL	11	Unmodified	_IPNPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3619384765625	2	641.361702	1280.70885	0.10406	6.6739E-05	0.22705	0.00014562	0.33111	0.00021236	641.3618421163271	51.957	0.87283	51.957	51.682	52.555	0					100	30	5	0	0	0	1.1987E-08	5	10907	10865;10907;10959;11002;11051		168.9	115.5	1	2166100			7785	1108	5230	5269	10603;10604;10605;10606;10607	10604					0.0797242914331946
IPNPQERTLTL	11	Unmodified	_IPNPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.36181640625	2	641.361702	1280.70885	0.184	0.00011801	0.072027	4.6195E-05	0.25603	0.00016421	641.361771151932	51.914	0.83988	51.981	51.681	52.521	0.067173					90	31	5	0	0	0	0.00013827	4	10761	10715;10761;10805;10846		146.48	81.009	1	1808400			7786	1108	5230	5269	10608;10609;10610;10611	10609					0.0797242914331946
IPPDGEFEL	9	Unmodified	_IPPDGEFEL_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000480260.1_1_3:183899436-183900037:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF;ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.750732421875	2	508.75039	1015.48623	0.43328	0.00022043	-0.91182	-0.00046389	-0.47854	-0.00024346	508.7502268076101	70.965	1.0907	70.965	70.325	71.415	0					93	38	4	0	0	0	0.14091	1	16722	16722		25.399	6.1423	1	227450			7787	3793	5231	5270	10612	10612					-0.020896449218980706
IPPERPEMLP	10	Unmodified	_IPPERPEMLP_					0	0	0		nc|ENSG00000147010|Q96B97-3|SH3KBP1;nc|ENSG00000147010|Q96B97-2|SH3KBP1;ENSG00000147010|ENST00000397821|SH3KBP1	nc|ENSG00000147010|Q96B97-3|SH3KBP1	nc|ENSG00000147010|Q96B97-3|SH3KBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8153076171875	2	589.815541	1177.61653	-0.45036	-0.00026563	-0.39129	-0.00023079	-0.84165	-0.00049642	589.8152990907986	41.829	2.0636	41.829	41.575	43.638	0					162	73	4	0	0	0	0.45133	1	8061	8061		4.5289	1.2476	1	862190			7788	3308	5232	5271	10613	10613					0.03482627805442462
IPQFHRLN	8	Unmodified	_IPQFHRLN_					0	0	0		ENSG00000138722|ENST00000264790|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.788818359375	2	512.787976	1023.5614	0.54273	0.0002783	2.0744	0.0010637	2.6172	0.0013421	512.7890361170201	92.127	0.4734	92.127	92.014	92.487	0					25	17	2	0	0	0	0.53026	1	23166	23166		7.9102	0	1	67986			7789	2932	5233	5272	10614	10614					0.05056002119840741
IPQHLLKTF	9	Unmodified	_IPQHLLKTF_					0	0	0		ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.828125	2	548.829309	1095.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.42	1	100.42	99.922	100.92	0								0	0	0	0.2722	1	25675	25675		4.756	0.42677	1				7790	1612	5234	5273	10615	10615					0.1000689912798407
IPQLLEAVL	9	Unmodified	_IPQLLEAVL_					0	0	0		nc|ENSG00000148803|A2VDF0-2|FUOM;ENSG00000148803|ENST00000278025|FUOM	nc|ENSG00000148803|A2VDF0-2|FUOM	nc|ENSG00000148803|A2VDF0-2|FUOM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.31048583984375	2	498.310418	994.606283	0.43217	0.00021535	0.057349	2.8578E-05	0.48952	0.00024393	498.3103173521878	91.124	0.82509	91.124	90.734	91.559	0					67	29	3	0	0	0	0.07372	4	22816	22768;22816;22862;22918		38.176	10.547	1	1061700			7791	3377	5235	5274	10616;10617;10618;10619	10617					0.1087638814251477
IPQLLEAVL	9	Unmodified	_IPQLLEAVL_					0	0	0		nc|ENSG00000148803|A2VDF0-2|FUOM;ENSG00000148803|ENST00000278025|FUOM	nc|ENSG00000148803|A2VDF0-2|FUOM	nc|ENSG00000148803|A2VDF0-2|FUOM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.310546875	2	498.310418	994.606283	0.18296	9.1173E-05	0.28586	0.00014245	0.46882	0.00023362	498.31044988706446	91.01	0.75281	91.046	90.745	91.498	0.035446					67	27	3	0	0	0	0.07372	3	22670	22620;22670;22716		38.176	10.547	1	769930			7792	3377	5235	5274	10620;10621;10622	10621					0.1087638814251477
IPQLSKEPGYF	11	Unmodified	_IPQLSKEPGYF_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.8968811035156	3	426.895806	1277.66559	0.45572	0.00019455	1.6496	0.0007042	2.1053	0.00089875	426.8965099612988	54.622	0.52345	54.687	54.544	55.068	0.065128					61	26	4	0	0	0	0.38777	1	11591	11591		3.5927	0.0056165	1	571430	+		7793	9121	5236	5275	10623	10623					0.037862393660361704
IPQLSKEPGYF	11	Unmodified	_IPQLSKEPGYF_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	426.895806	1277.66559	0.76515	0.00032664	2.0063	0.00085647	2.7714	0.0011831	426.8966554641169	54.619	0.53518	54.619	54.48	55.015	0	-0.034073	0.00025856	NaN	3.5927	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438340	+		7794	9121	5236	5275							0.037862393660361704
IPQLSKEPGYF	11	Unmodified	_IPQLSKEPGYF_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	426.895806	1277.66559	0.45572	0.00019455	1.6496	0.0007042	2.1053	0.00089875	426.8965099612988	54.622	0.52345	54.687	54.544	55.068	0.065128	0.034073	-0.00019824	NaN	3.5927	61	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571430	+		7795	9121	5236	5275							0.037862393660361704
IPQWENDWN	9	Unmodified	_IPQWENDWN_					0	0	0		ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3	ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2241821289062	2	601.26727	1200.51999	0.65956	0.00039657	-0.52634	-0.00031647	0.13322	8.0099E-05	601.2673442948164	93.286	0.36993	93.286	93.157	93.527	0					26	14	3	0	0	0	0.25281	1	23482	23482		6.7232	0	1	102050			7796	2663	5237	5276	10624	10624					-0.07225223430145888
IPQWYLWRKRK	11	Unmodified	_IPQWYLWRKRK_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7974243164062	3	525.308655	1572.90414	0.43547	0.00022876	1.6994	0.0008927	2.1348	0.0011215	525.3094836723902	98.014	0.57434	98.056	97.829	98.404	0.041824					44	29	2	0	0	0	0.31101	1	24758	24758		0.45452	0.35968	1	86389	+		7797	10378	5238	5277	10625	10625					0.14060064458772104
IPQWYLWRKRK	11	Unmodified	_IPQWYLWRKRK_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	525.308655	1572.90414	0.54494	0.00028626	1.7527	0.00092069	2.2976	0.001207	525.6439773582895	98.079	0.54916	98.079	97.839	98.389	0	0.011478	2.9973E-05	NaN	0.45452	51	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135200	+		7798	10378	5238	5277							0.14060064458772104
IPRGCHAATI	10	Unmodified	_IPRGCHAATI_					0	0	0			REV__ENSG00000129437|ENST00000650543|KLK14	REV__ENSG00000129437|ENST00000650543|KLK14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.2872924804688	2	519.779293	1037.54403	0.55992	0.00029103	-0.50217	-0.00026102	0.057743	3.0014E-05	519.7788887334592	92.274	0.62225	92.274	92.06	92.682	0					50	23	3	0	0	0	0.31585	1	23145	23145		10.824	2.2306	1	261970	+		7799	7796	5239	5278	10626	10626					0.0267633852254221
IPRTLHQIF	9	Unmodified	_IPRTLHQIF_					0	0	0		chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11;ENSG00000138160|ENST00000260731|KIF11	chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.834716796875	2	562.832383	1123.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.254	1	95.293	94.793	95.793	0.038872								0	0	0	0.28527	1	23944	23944		2.0598	0	1				7800	141	5240	5279	10627	10627					0.09333417359516716
IPSEIQVFV	9	Unmodified	_IPSEIQVFV_					0	0	0		nc|ENSG00000135114|Q15646-3|OASL;ENSG00000135114|ENST00000257570|OASL	nc|ENSG00000135114|Q15646-3|OASL	nc|ENSG00000135114|Q15646-3|OASL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2578125	2	516.292225	1030.5699	0.63531	0.000328	-1.7736	-0.00091569	-1.1383	-0.00058769	516.2912180289934	79.608	0.39034	79.608	79.452	79.842	0					19	13	2	0	0	0	0.25162	1	19336	19336		8.1555	0	1	55225			7801	2714	5241	5280	10628	10628					0.05583511245822592
IPSEQEQL	8	Unmodified	_IPSEQEQL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2401428222656	2	472.24019	942.465826	0.16277	7.6866E-05	0.065678	3.1016E-05	0.22845	0.00010788	472.24014293467656	59.881	0.82675	59.881	59.656	60.483	0					64	30	3	0	0	0	0.23148	1	13341	13341		39.957	1.9833	1	776950			7802	344	5242	5281	10629	10629					-0.007708155817113038
IPSEQEQL	8	Unmodified	_IPSEQEQL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.240234375	2	472.24019	942.465826	-0.094381	-4.457E-05	0.4128	0.00019494	0.31842	0.00015037	472.2402678467663	59.775	0.72186	59.847	59.675	60.397	0.072342					56	27	3	0	0	0	0.11372	1	13178	13178		52.268	6.2474	1	630170			7803	344	5242	5281	10630	10630					-0.007708155817113038
IPSILAQAQ	9	Unmodified	_IPSILAQAQ_					0	0	0		NLRP7|p.D272Tfs*16|1|0.31|ENSG00000167634|chr19:54940005-54940005|C/-|frameshift_variant;nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7	NLRP7|p.D272Tfs*16|1|0.31|ENSG00000167634|chr19:54940005-54940005|C/-|frameshift_variant	NLRP7|p.D272Tfs*16|1|0.31|ENSG00000167634|chr19:54940005-54940005|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7767028808594	2	470.776742	939.538931	-0.31329	-0.00014749	0.16749	7.8851E-05	-0.1458	-6.8641E-05	470.77663801091063	32.657	0.42099	32.73	32.544	32.965	0.073784					33	21	2	0	0	0	0.30397	1	4949	4949		6.2058	0.47393	1	33028			7804	4218	5243	5282	10631	10631					0.0667435793156983
IPSPSPEVGK	10	Unmodified	_IPSPSPEVGK_					0	0	0			REV__ENST00000466373.1_1_22:19439515-19452862:-|nuORF	REV__ENST00000466373.1_1_22:19439515-19452862:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7799377441406	2	505.779482	1009.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.908	1	95.947	95.447	96.447	0.039406								0	0	0	0.33905	1	24144	24144		1.3295	0.63916	1		+		7805	8143	5244	5283	10632	10632					0.04002036723386482
IPSSFVGLAH	10	Unmodified	_IPSSFVGLAH_					0	0	0			REV__nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L	REV__nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.739013671875	2	514.282192	1026.54983	-0.34209	-0.00017593	0.13405	6.894E-05	-0.20804	-0.00010699	514.2821260190783	41.474	0.32124	41.564	41.365	41.687	0.089767					19	13	2	0	0	0	0.31803	1	7642	7642		3.2813	0.28607	1	39188	+		7806	10059	5245	5284	10633	10633					0.037617603058379245
IPSSLVDHL	9	Unmodified	_IPSSLVDHL_					0	0	0		nc|ENSG00000030066|Q12769-3|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769-3|NUP160	nc|ENSG00000030066|Q12769-3|NUP160	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7742919921875	2	490.7742	979.533846	0.48822	0.0002396	-0.31279	-0.00015351	0.17542	8.6094E-05	490.7739501091299	55.388	0.67579	55.388	55.19	55.866	0					51	23	4	0	0	0	0.081719	1	11959	11959		49.933	23.049	1	626280			7807	500	5246	5285	10634	10634					0.04326054068940266
IPSSLVDHL	9	Unmodified	_IPSSLVDHL_					0	0	0		nc|ENSG00000030066|Q12769-3|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769-3|NUP160	nc|ENSG00000030066|Q12769-3|NUP160	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7744445800781	2	490.7742	979.533846	0.41855	0.00020541	-0.10419	-5.1133E-05	0.31436	0.00015428	490.77411374318444	55.336	0.57197	55.401	55.216	55.787	0.065128					46	21	3	0	0	0	0.01209	1	11800	11800		74.423	44.198	1	423040			7808	500	5246	5285	10635	10635					0.04326054068940266
IPSTFEGAEM	10	Unmodified	_IPSTFEGAEM_					0	0	0		ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant	ENSG00000188994|ENST00000369577|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.323974609375	2	541.247157	1080.47976	0.56742	0.00030712	1.3049	0.00070628	1.8723	0.0010134	541.2470941896776	70.285	0.59253	70.285	69.991	70.583	0					36	22	2	0	0	0	0.27175	1	16471	16471		32.786	0	1	204890			7809	5184	5247	5286	10636	10636					-0.0572590614492583
IPTAPPPLLP	10	Unmodified	_IPTAPPPLLP_					0	0	0		ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.3128356933594	2	508.312961	1014.61137	0.31576	0.00016051	-0.36751	-0.00018681	-0.051749	-2.6305E-05	508.3126115007785	62.407	0.51243	62.479	62.235	62.748	0.072697					25	17	2	0	0	0	0.16299	1	13952	13952		37.974	7.3375	1	151060			7810	6146	5248	5287	10637	10637					0.10464692005132292
IPTDWGEQDC	10	Unmodified	_IPTDWGEQDC_					0	0	0			REV__ENSG00000147488|ENST00000689386|ST18	REV__ENSG00000147488|ENST00000689386|ST18	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7999267578125	2	582.237321	1162.46009	0.78034	0.00045434	-3.2881	-0.0019144	-2.5077	-0.0014601	582.2351925927297	85.149	0.1195	85.149	85.07	85.189	0					5	3	2	0	0	0	0.31496	1	21023	21023		13.906	0.86358	1	73238	+		7811	9573	5249	5288	10638	10638					-0.11464282155679939
IPTIQSVTV	9	Unmodified	_IPTIQSVTV_					0	0	0			REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2842102050781	2	479.2844	956.554247	-0.16016	-7.6761E-05	0.37755	0.00018095	0.21739	0.00010419	479.2844479289534	49.137	0.87642	49.214	48.872	49.749	0.076607					85	31	4	0	0	0	0.098463	1	9993	9993		32.786	3.7041	1	929040	+		7812	9359	5250	5289	10639	10639					0.07423224728768218
IPTQPDARL	9	Unmodified	_IPTQPDARL_					0	0	0		ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	ENST00000532739.1_1_16:16450692-16458759:+|nuORF;nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7846374511719	2	505.785099	1009.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.06	1	41.06	40.56	41.56	0								0	0	0	0.28724	1	7611	7611		1.6526	0.17072	1				7813	7443;7034	5251	5290	10640	10640					0.05124858817509903
IPTVAATALS	10	Unmodified	_IPTVAATALS_					0	0	0		HTR2C|p.R400T|1|0.36|ENSG00000147246|chrX:114907237-114907237|G/C|missense_variant	HTR2C|p.R400T|1|0.36|ENSG00000147246|chrX:114907237-114907237|G/C|missense_variant	HTR2C|p.R400T|1|0.36|ENSG00000147246|chrX:114907237-114907237|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2765197753906	2	472.276575	942.538597	0.075233	3.5531E-05	-0.091628	-4.3274E-05	-0.016395	-7.7431E-06	472.27648687886847	48.06	1.2696	48.06	47.735	49.004	0					116	43	4	0	0	0	0.34138	2	9850	9850;9995		18.146	0	1	3158000			7814	7357	5252	5291	10641;10642	10641					0.06502938211690434
IPVAIFITL	9	Unmodified	_IPVAIFITL_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8180847167969	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.865	1	99.865	99.365	100.37	0								0	0	0	0.018691	1	25505	25505		63.563	16.642	1				7815	2796	5253	5292	10643	10643					0.12781880010504665
IPVAIFITL	9	Unmodified	_IPVAIFITL_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.81805419921875	2	493.817879	985.621205	0.57715	0.00028501	0.17011	8.4004E-05	0.74727	0.00036901	493.8178980842921	99.66	0.84721	99.703	99.492	100.34	0.042839					84	52	2	0	0	0	0.0044242	2	25298	25298;25337		93.883	29.647	1	2895800			7816	2796	5253	5292	10644;10645	10644					0.12781880010504665
IPVAIFITL	9	Unmodified	_IPVAIFITL_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8179626464844	2	493.817879	985.621205	0.55728	0.00027519	-0.22327	-0.00011026	0.334	0.00016494	493.81766907867876	100.46	0.27422	100.5	100.3	100.58	0.042839					35	15	3	0	0	0	0.045114	1	25540	25540		44.407	6.2558	1	549090			7817	2796	5253	5292	10646	10646					0.12781880010504665
IPVAQVLRN	9	Unmodified	_IPVAQVLRN_					0	0	0		ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.3124084472656	2	505.311284	1008.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.16	1	110.16	109.66	110.66	0								0	0	0	0.27427	1	28312	28312		4.3292	0	1				7818	3538	5254	5293	10647	10647					0.10405441951138528
IPVDATSPVG	10	Unmodified	_IPVDATSPVG_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2394104003906	2	478.258382	954.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.26	1	65.26	64.76	65.76	0								0	0	0	0.33738	1	14964	14964		3.2813	0.39209	1				7819	5466	5255	5294	10648	10648					0.023140613150076206
IPVEEHFQTL	10	Unmodified	_IPVEEHFQTL_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8170776367188	2	606.816596	1211.61864	0.89164	0.00054106	0.18289	0.00011098	1.0745	0.00065204	606.8165932299428	54.643	0.53518	54.643	54.48	55.015	0					56	23	3	0	0	0	0.00018049	2	11753	11710;11753		100.71	60.759	1	601140			7820	1452	5256	5295	10649;10650	10650					0.021293798149145005
IPVEEHFQTL	10	Unmodified	_IPVEEHFQTL_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.81689453125	2	606.816596	1211.61864	1.0089	0.00061223	0.18734	0.00011368	1.1963	0.00072591	606.8166654087561	54.621	0.41331	54.686	54.514	54.927	0.065128					50	22	3	0	0	0	0.0034669	2	11606	11563;11606		81.915	48.47	1	550570			7821	1452	5256	5295	10651;10652	10652					0.021293798149145005
IPVESEVNL	9	Unmodified	_IPVESEVNL_					0	0	0		nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2716369628906	2	500.27149	998.528426	0.34236	0.00017127	0.47374	0.000237	0.8161	0.00040827	500.27176376426075	61.459	0.46784	61.459	61.218	61.686	0					49	26	3	0	0	0	0.0021834	3	13812	13761;13812;13850		114.65	46.568	1	1376200			7822	2101	5257	5296	10653;10654;10655	10654					0.029103304864634083
IPVESEVNL	9	Unmodified	_IPVESEVNL_					0	0	0		nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2711486816406	2	500.27149	998.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.794	1	61.794	61.294	62.294	0								0	0	0	0.1048	1	13906	13906		32.305	0	1				7823	2101	5257	5296	10656	10656					0.029103304864634083
IPVESEVNL	9	Unmodified	_IPVESEVNL_					0	0	0		nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.27166748046875	2	500.27149	998.528426	0.2999	0.00015003	0.10459	5.2322E-05	0.40449	0.00020235	500.2715722679646	61.389	0.94262	61.463	61.2	62.142	0.073421					71	49	3	0	0	0	0.0021834	4	13643	13599;13643;13708;13755		114.65	46.568	1	1229900			7824	2101	5257	5296	10657;10658;10659;10660	10658					0.029103304864634083
IPVEVLVDLF	10	Unmodified	_IPVEVLVDLF_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3368530273438	2	572.336633	1142.65871	0.025683	1.4699E-05	0.27507	0.00015744	0.30076	0.00017213	572.3367156093298	105.62	0.32181	105.62	105.42	105.75	0					61	34	2	0	0	0	0.055325	1	27201	27201		56.177	46.103	1	251210			7825	5037	5258	5297	10661	10661					0.09308926485437041
IPVEVLVDLF	10	Unmodified	_IPVEVLVDLF_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3367309570312	2	572.336633	1142.65871	0.30236	0.00017305	0.064967	3.7183E-05	0.36732	0.00021023	572.3365853359502	105.55	0.369	105.57	105.41	105.77	0.029739					92	41	3	0	0	0	0.35104	2	27029	27000;27029		17.113	10.39	1	270070			7826	5037	5258	5297	10662;10663	10663					0.09308926485437041
IPVEVLVDLF	10	Unmodified	_IPVEVLVDLF_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.336633	1142.65871	0.29382	0.00016817	-0.23075	-0.00013207	0.063069	3.6097E-05	572.3363213060708	105.83	0.028671	105.86	105.83	105.86	0.029739	0.11936	-0.0005701	NaN	56.177	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24983			7827	5037	5258	5297							0.09308926485437041
IPVHDGYVL	9	Unmodified	_IPVHDGYVL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7766418457031	2	506.776742	1011.53893	0.097956	4.9642E-05	-0.014829	-7.5152E-06	0.083127	4.2127E-05	506.7766808092746	51.138	1.8726	51.138	50.856	52.729	0					138	64	4	0	0	0	0.0053304	3	10641	10641;10685;10733		81.613	45.569	1	2058600			7828	852	5259	5298	10664;10665;10666	10664					0.03362357931564475
IPVHDGYVL	9	Unmodified	_IPVHDGYVL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7767028808594	2	506.776742	1011.53893	0.22807	0.00011558	-0.066233	-3.3565E-05	0.16184	8.2015E-05	506.7766130180939	51.076	1.3848	51.146	50.821	52.206	0.069874					130	51	4	0	0	0	0.024893	3	10530	10482;10530;10576		54.774	31.625	1	1621300			7829	852	5259	5298	10667;10668;10669	10668					0.03362357931564475
IPVIQIVYETL	11	Unmodified	_IPVIQIVYETL_					0	0	0		DDX1|p.L431Ffs*23|1|0.26|ENSG00000079785|chr2:15620291-15620292|-/T|frameshift_variant;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1	DDX1|p.L431Ffs*23|1|0.26|ENSG00000079785|chr2:15620291-15620292|-/T|frameshift_variant	DDX1|p.L431Ffs*23|1|0.26|ENSG00000079785|chr2:15620291-15620292|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3815307617188	2	644.381571	1286.74859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.613	1	98.613	98.113	99.113	0								0	0	0	0.32331	1	25124	25124		6.6304	3.8952	1				7830	268	5260	5299	10670	10670					0.11668556094014093
IPVKDHKL	8	Unmodified	_IPVKDHKL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2238464355469	2	475.295102	948.575651	-0.21965	-0.0001044	-0.13964	-6.6372E-05	-0.3593	-0.00017077	475.29493465058005	21.651	0.39398	21.753	21.593	21.987	0.10178					100	42	3	0	0	0	0.28856	1	1806	1806		49.933	11.959	1	89108			7831	1753	5261	5300	10671	10671					0.09930654548122675
IPVMKHKR	8	Unmodified	_IPVMKHKR_					0	0	0			REV__ENSG00000095574|ENST00000368886|IKZF5	REV__ENSG00000095574|ENST00000368886|IKZF5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.8095397949219	2	504.810396	1007.60624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.57	1	100.57	100.07	101.07	0								0	0	0	0.38822	1	25721	25721		8.5933	0.43775	1		+		7832	8345	5262	5301	10672	10672					0.10274109661531838
IPVMKHKR	8	Unmodified	_IPVMKHKR_					0	0	0			REV__ENSG00000095574|ENST00000368886|IKZF5	REV__ENSG00000095574|ENST00000368886|IKZF5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.80914306640625	2	504.810396	1007.60624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.72	1	100.72	100.22	101.22	0								0	0	0	0.38822	1	25767	25767		8.5933	3.3626	1		+		7833	8345	5262	5301	10673	10673					0.10274109661531838
IPVMKHKR	8	Unmodified	_IPVMKHKR_					0	0	0			REV__ENSG00000095574|ENST00000368886|IKZF5	REV__ENSG00000095574|ENST00000368886|IKZF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.8096618652344	2	504.810396	1007.60624	0.42172	0.00021289	-2.5936	-0.0013093	-2.1719	-0.0010964	504.80898097486994	100.26	0.39954	100.3	100.16	100.56	0.042831					40	22	3	0	0	0	0.52924	1	25515	25515		8.5933	2.8614	1	149760	+		7834	8345	5262	5301	10674	10674					0.10274109661531838
IPVMKHKR	8	Unmodified	_IPVMKHKR_					0	0	0			REV__ENSG00000095574|ENST00000368886|IKZF5	REV__ENSG00000095574|ENST00000368886|IKZF5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.810396	1007.60624	0.34291	0.0001731	-3.1032	-0.0015665	-2.7603	-0.0013934	504.80872185984595	100.17	0.29813	100.17	99.939	100.24	0	-0.064599	-0.00034185	NaN	8.5933	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86586	+		7835	8345	5262	5301							0.10274109661531838
IPVMKHKR	8	Unmodified	_IPVMKHKR_					0	0	0			REV__ENSG00000095574|ENST00000368886|IKZF5	REV__ENSG00000095574|ENST00000368886|IKZF5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	504.810396	1007.60624	0.42172	0.00021289	-2.5936	-0.0013093	-2.1719	-0.0010964	504.80898097486994	100.26	0.39954	100.3	100.16	100.56	0.042831	0.064599	0.00017259	NaN	8.5933	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149760	+		7836	8345	5262	5301							0.10274109661531838
IPVNEKDTL	9	Unmodified	_IPVNEKDTL_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7847900390625	2	514.784764	1027.55498	0.38236	0.00019683	-0.53622	-0.00027604	-0.15386	-7.9206E-05	514.784484108307	38.373	0.82014	38.373	38.129	38.95	0					85	29	5	0	0	0	0.0043442	2	6822	6781;6822		96.936	49.187	1	443340			7837	3983	5263	5302	10675;10676	10676					0.04230019377814642
IPVNEKDTL	9	Unmodified	_IPVNEKDTL_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7848510742188	2	514.784764	1027.55498	0.39313	0.00020238	-0.25263	-0.00013005	0.1405	7.2329E-05	514.7845318801033	38.271	0.71688	38.358	38.118	38.835	0.08688					60	26	3	0	0	0	0.00648	2	6666	6625;6666		78.06	36.105	1	323950			7838	3983	5263	5302	10677;10678	10678					0.04230019377814642
IPVNEKETL	9	Unmodified	_IPVNEKETL_					0	0	0		ENST00000520731.1_1_5:153832004-153835585:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L;ENSG00000164576|ENST00000297109|SAP30L	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7925415039062	2	521.792589	1041.57063	0.33467	0.00017463	-0.61113	-0.00031888	-0.27645	-0.00014425	521.7923480037111	38.371	0.71932	38.371	38.101	38.82	0					42	25	3	0	0	0	0.1646	1	6809	6809		22.658	0.91144	1	104910			7839	4015	5264	5303	10679	10679					0.0515030589485832
IPVNEKETL	9	Unmodified	_IPVNEKETL_					0	0	0		ENST00000520731.1_1_5:153832004-153835585:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L;ENSG00000164576|ENST00000297109|SAP30L	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7923583984375	2	521.792589	1041.57063	0.29561	0.00015425	-0.66357	-0.00034625	-0.36796	-0.000192	521.7921788541499	38.272	0.38129	38.359	38.183	38.564	0.08688					33	13	3	0	0	0	0.2546	1	6654	6654		12.241	0.60036	1	82763			7840	4015	5264	5303	10680	10680					0.0515030589485832
IPVNEKETL	9	Unmodified	_IPVNEKETL_					0	0	0		ENST00000520731.1_1_5:153832004-153835585:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L;ENSG00000164576|ENST00000297109|SAP30L	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	521.792589	1041.57063	0.29561	0.00015425	-0.66357	-0.00034625	-0.36796	-0.000192	521.7921788541499	38.272	0.38129	38.359	38.183	38.564	0.08688	-0.0057659	-1.9606E-05	NaN	22.658	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82763			7841	4015	5264	5303							0.0515030589485832
IPVPYVEKL	9	Unmodified	_IPVPYVEKL_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3184204101562	2	529.318243	1056.62193	0.26943	0.00014261	0.29297	0.00015507	0.5624	0.00029769	529.3182301875066	60.888	0.69508	60.962	60.719	61.414	0.073421					61	23	4	0	0	0	0.0097877	2	13516	13474;13516		67.838	37.202	1	731970			7842	1140	5265	5304	10681;10682	10682					0.09588674659562457
IPVRPVLCYT	10	Unmodified	_IPVRPVLCYT_					0	0	0			REV__nc|ENSG00000089356|Q14802-5|FXYD3	REV__nc|ENSG00000089356|Q14802-5|FXYD3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2922973632812	2	580.828452	1159.64235	0.5695	0.00033078	-2.5236	-0.0014658	-1.9541	-0.001135	581.3289480330956	68.513	0.3355	68.577	68.359	68.694	0.063507					17	12	2	0	0	0	0.31803	1	15750	15750		3.2813	1.2216	1	74978	+		7843	12759	5266	5305	10683	10683					0.06891522047703802
IPVSRDWEL	9	Unmodified	_IPVSRDWEL_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;ENST00000487089.1_1_6:31603319-31603595:+|nuORF;ENST00000487839.1_1_6:31603188-31603595:+|nuORF	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7982788085938	2	557.798206	1113.58186	0.17064	9.5182E-05	0.12858	7.1721E-05	0.29922	0.0001669	557.7980585982017	58.373	0.33828	58.373	58.256	58.595	0					20	12	2	0	0	0	0.21599	1	12865	12865		22.658	5.5452	1	263220			7844	5473	5267	5306	10684	10684					0.02961127988987755
IPVSRDWEL	9	Unmodified	_IPVSRDWEL_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;ENST00000487089.1_1_6:31603319-31603595:+|nuORF;ENST00000487839.1_1_6:31603188-31603595:+|nuORF	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7984008789062	2	557.798206	1113.58186	0.42768	0.00023856	-0.10799	-6.0234E-05	0.3197	0.00017833	557.7979476780972	58.266	0.44297	58.336	58.184	58.627	0.070477					30	15	3	0	0	0	0.12515	1	12693	12693		27.223	4.487	1	320340			7845	5473	5267	5306	10685	10685					0.02961127988987755
IPVSRDWEL	9	Unmodified	_IPVSRDWEL_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;ENST00000487089.1_1_6:31603319-31603595:+|nuORF;ENST00000487839.1_1_6:31603188-31603595:+|nuORF	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	557.798206	1113.58186	0.42768	0.00023856	-0.10799	-6.0234E-05	0.3197	0.00017833	557.7979476780972	58.266	0.44297	58.336	58.184	58.627	0.070477	-0.018606	-0.0001452	NaN	27.223	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320340			7846	5473	5267	5306							0.02961127988987755
IPVSVEAFL	9	Unmodified	_IPVSVEAFL_					0	0	0		ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.29296875	2	487.781493	973.548434	0.37381	0.00018234	0.38222	0.00018644	0.75603	0.00036878	487.7816713887365	85.808	0.38287	85.833	85.572	85.954	0.025169					23	13	2	0	0	0	0.24635	1	21047	21047		10.824	3.5347	1	172810			7847	3914	5268	5307	10686	10686					0.06060126217084871
IPVWDQEFL	9	Unmodified	_IPVWDQEFL_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7951049804688	2	573.795132	1145.57571	0.074101	4.2519E-05	0.085122	4.8842E-05	0.15922	9.1361E-05	573.7950896345114	86.922	1.2948	86.922	86.5	87.795	0					85	24	4	0	0	0	0.0040275	3	21527	21527;21572;21628		103.35	65.38	1	7732400			7848	1807	5269	5308	10687;10688;10689	10687					0.008746097574885425
IPVWDQEFL	9	Unmodified	_IPVWDQEFL_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7841186523438	2	573.795132	1145.57571	0.38028	0.0002182	-0.23359	-0.00013404	0.14669	8.4168E-05	573.7952344924178	87.441	1.3424	87.441	87.263	88.605	0					61	49	2	0	0	0	0.17428	1	21715	21715		21.537	5.6898	1	164920			7849	1807	5269	5308	10690	10690					0.008746097574885425
IPVWDQEFL	9	Unmodified	_IPVWDQEFL_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7952880859375	2	573.795132	1145.57571	0.16244	9.3207E-05	0.0093687	5.3757E-06	0.17181	9.8583E-05	573.7950339017805	86.844	1.637	86.872	86.412	88.05	0.027573					83	24	4	0	0	0	0.0043591	2	21404	21360;21404		96.367	54.679	1	6877600			7850	1807	5269	5308	10691;10692	10692					0.008746097574885425
IPVWDQEFL	9	Unmodified	_IPVWDQEFL_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	573.795132	1145.57571	0.23053	0.00013228	-0.19117	-0.00010969	0.039364	2.2587E-05	573.7952306796318	87.344	0.82242	87.372	87.256	88.078	0.027573	-0.034633	3.1847E-05	NaN	21.537	45	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135780			7851	1807	5269	5308							0.008746097574885425
IPVWETETGH	10	Unmodified	_IPVWETETGH_					0	0	0		nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	nc|ENSG00000166004|Q9C0D2-4|CEP295	nc|ENSG00000166004|Q9C0D2-4|CEP295	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7862548828125	2	584.785296	1167.55604	0.29119	0.00017028	1.5129	0.00088472	1.8041	0.001055	584.7861327324605	86.892	0.47731	86.892	86.639	87.116	0					51	21	3	0	0	0	0.27354	1	21529	21529		25.399	4.9457	1	704840			7852	4123	5270	5309	10693	10693					-0.021037662532762624
IPVWETETGH	10	Unmodified	_IPVWETETGH_					0	0	0		nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	nc|ENSG00000166004|Q9C0D2-4|CEP295	nc|ENSG00000166004|Q9C0D2-4|CEP295	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7862548828125	2	584.785296	1167.55604	0.51802	0.00030293	1.4487	0.00084717	1.9667	0.0011501	584.785907962379	86.86	0.49297	86.888	86.63	87.123	0.02758					54	22	4	0	0	0	0.27354	1	21361	21361		25.399	4.9457	1	649740			7853	4123	5270	5309	10694	10694					-0.021037662532762624
IPWDDLIAL	9	Unmodified	_IPWDDLIAL_					0	0	0		ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENSG00000160294|ENST00000291688|MCM3AP	ENST00000486937.5_1_21:47655184-47666418:-|nuORF	ENST00000486937.5_1_21:47655184-47666418:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2915649414062	2	528.292225	1054.5699	0.51399	0.00027154	-0.11023	-5.8236E-05	0.40376	0.0002133	528.2920161828648	97.294	0.41856	97.294	97.02	97.438	0					61	18	4	0	0	0	0.25979	2	24660	24660;24698		11.64	1.5664	1	2584000			7854	3757	5271	5310	10695;10696	10695					0.044795112457904906
IPWDDLIAL	9	Unmodified	_IPWDDLIAL_					0	0	0		ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENSG00000160294|ENST00000291688|MCM3AP	ENST00000486937.5_1_21:47655184-47666418:-|nuORF	ENST00000486937.5_1_21:47655184-47666418:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2920532226562	2	528.292225	1054.5699	0.55343	0.00029238	2.0051	0.0010593	2.5586	0.0013517	528.2920024550718	97.325	0.95636	97.366	97.076	98.033	0.040855					192	47	6	0	0	0	0.21398	2	24555	24508;24555		16.942	1.5664	1	2244400			7855	3757	5271	5310	10697;10698	10698					0.044795112457904906
IPWGPRHSQ	9	Unmodified	_IPWGPRHSQ_					0	0	0		ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2836303710938	2	539.283057	1076.55156	0.56736	0.00030597	0.47584	0.00025661	1.0432	0.00056258	539.2832171637341	97.297	0.45679	97.297	96.981	97.438	0					44	21	3	0	0	0	0.24021	1	24706	24706		13.906	1.6654	1	411790			7856	2245	5272	5311	10699	10699					0.016348141144590045
IPWLEWLA	8	Unmodified	_IPWLEWLA_					0	0	0		ENSG00000173825|ENST00000309880|TIGD3	ENSG00000173825|ENST00000309880|TIGD3	ENSG00000173825|ENST00000309880|TIGD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2857666015625	2	514.284203	1026.55385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.283	1	69.283	68.783	69.783	0								0	0	0	0.38822	1	16188	16188		5.7604	0.028577	1				7857	4558	5273	5312	10700	10700					0.04163849799556374
IPWPLEEQF	9	Unmodified	_IPWPLEEQF_					0	0	0		ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2	ENSG00000176871|ENST00000315436|WSB2	ENSG00000176871|ENST00000315436|WSB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.79443359375	2	579.795132	1157.57571	0.37634	0.0002182	-1.1103	-0.00064375	-0.73397	-0.00042555	579.7946215195399	87.309	0.95645	87.309	86.992	87.948	0					70	27	4	0	0	0	0.003963	2	21669	21669;21717		103.75	61.909	1	615870			7858	4674	5274	5313	10701;10702	10701					0.003226097574497544
IPYGERITL	9	Unmodified	_IPYGERITL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3033447265625	2	531.303124	1060.5917	0.59083	0.00031391	-0.42354	-0.00022503	0.16729	8.8882E-05	531.3030287982506	54.886	0.95104	54.886	54.657	55.608	0					60	34	2	0	0	0	0.032232	2	11831	11776;11831		49.527	20.446	1	806040			7859	2075	5275	5314	10703;10704	10704					0.06382315994369492
IPYGERITL	9	Unmodified	_IPYGERITL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3032836914062	2	531.303124	1060.5917	0.70229	0.00037313	-0.62241	-0.00033069	0.079879	4.244E-05	531.3029573304624	54.841	0.72009	54.906	54.633	55.353	0.065128					76	30	4	0	0	0	0.013066	3	11665	11622;11665;11706		63.227	28.826	1	631640			7860	2075	5275	5314	10705;10706;10707	10706					0.06382315994369492
IPYMANEYN	9	Unmodified	_IPYMANEYN_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7478637695312	2	557.747324	1113.4801	0.52352	0.00029199	0.71677	0.00039978	1.2403	0.00069177	557.7477034177236	46.965	0.64079	47.048	46.79	47.431	0.083096					52	24	3	0	0	0	0.32375	1	9326	9326		3.5965	0.60125	1	241690			7861	2804	5276	5315	10708	10708					-0.07210486425083218
IPYQQNPYN	9	Unmodified	_IPYQQNPYN_					0	0	0		nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3	nc|ENSG00000173210|O94929-2|ABLIM3	nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2872314453125	2	568.772188	1135.52982	0.54001	0.00030714	1.189	0.00067626	1.729	0.0009834	568.7728636860438	54.704	0.29404	54.704	54.657	54.951	0					14	10	2	0	0	0	0.25281	1	11735	11735		6.7232	0	1	64804			7862	4534	5277	5316	10709	10709					-0.03252035424748101
IPYRYSDEL	9	Unmodified	_IPYRYSDEL_					0	0	0		nc|ENSG00000117650|P51955-3|NEK2;nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2	nc|ENSG00000117650|P51955-3|NEK2	nc|ENSG00000117650|P51955-3|NEK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.287353515625	2	578.287671	1154.56079	0.3508	0.00020286	-0.036951	-2.1369E-05	0.31385	0.0001815	578.2875359465365	48.507	0.30822	48.587	48.386	48.694	0.080029					15	9	2	0	0	0	0.22861	1	9758	9758		15.248	0.41021	1	89252			7863	2014	5278	5317	10710	10710					-0.010308821105354582
IPYRYSDEL	9	Unmodified	_IPYRYSDEL_					0	0	0		nc|ENSG00000117650|P51955-3|NEK2;nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2	nc|ENSG00000117650|P51955-3|NEK2	nc|ENSG00000117650|P51955-3|NEK2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	578.287671	1154.56079	0.23984	0.0001387	-0.2382	-0.00013775	0.0016429	9.5006E-07	578.2872298567756	48.582	0.34474	48.582	48.399	48.744	0	-0.0027341	-8.9088E-05	NaN	15.248	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89745			7864	2014	5278	5317							-0.010308821105354582
IPYSREGEY	9	Unmodified	_IPYSREGEY_					0	0	0		XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant;ENSG00000158125|ENST00000379416|XDH	XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7784423828125	2	557.264196	1112.51384	0.39432	0.00021974	2.258	0.0012583	2.6523	0.001478	557.2656280866257	87.241	0.53062	87.241	87.043	87.574	0					37	20	3	0	0	0	0.10833	1	21677	21677		30.637	5.2372	1	215010			7865	3681	5279	5318	10711	10711					-0.03791741661643755
IPYSREGEY	9	Unmodified	_IPYSREGEY_					0	0	0		XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant;ENSG00000158125|ENST00000379416|XDH	XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7784423828125	2	557.264196	1112.51384	0.4042	0.00022525	2.6417	0.0014721	3.0459	0.0016974	557.2659591604086	87.222	0.48808	87.249	87.044	87.532	0.027573					38	19	3	0	0	0	0.20358	1	21486	21486		18.146	2.2992	1	229340			7866	3681	5279	5318	10712	10712					-0.03791741661643755
IQCAMVKGYL	10	Unmodified	_IQCAMVKGYL_					0	0	0		nc|ENSG00000163218|Q96LB8-2|PGLYRP4;ENSG00000163218|ENST00000359650|PGLYRP4	nc|ENSG00000163218|Q96LB8-2|PGLYRP4	nc|ENSG00000163218|Q96LB8-2|PGLYRP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2453002929688	2	563.293388	1124.57222	0.38014	0.00021413	3.1196	0.0017572	3.4997	0.0019714	563.2948917795218	96.182	0.26801	96.221	96.037	96.305	0.039772					22	13	3	0	0	0	0.31496	1	24196	24196		13.906	2.2658	1	146090			7867	3883	5280	5319	10713	10713					0.014919003876229908
IQDRVTLPN	9	Unmodified	_IQDRVTLPN_					0	0	0			REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF	REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2957153320312	2	528.29583	1054.57711	-0.097039	-5.1265E-05	0.25828	0.00013645	0.16124	8.5184E-05	528.2957186282296	26.167	0.30193	26.259	26.115	26.417	0.091507					50	26	3	0	0	0	0.32112	2	3037	3037;3070		3.9444	0	1	41889	+		7868	12616	5281	5320	10714;10715	10714					0.05200243846252306
IQFADYIFPA	10	Unmodified	_IQFADYIFPA_					0	0	0		nc|ENSG00000083123|P21953-2|BCKDHB;ENSG00000083123|ENST00000320393|BCKDHB	nc|ENSG00000083123|P21953-2|BCKDHB	nc|ENSG00000083123|P21953-2|BCKDHB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8030395507812	2	592.802957	1183.59136	0.25459	0.00015092	0.25575	0.00015161	0.51034	0.00030253	592.8029846883859	90.283	0.55632	90.283	90.101	90.657	0					39	22	2	0	0	0	0.35104	1	22603	22603		17.113	1.2657	1	274320			7869	928	5282	5321	10716	10716					0.00690896274500119
IQFSLSELPP	10	Unmodified	_IQFSLSELPP_					0	0	0		nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2980346679688	2	565.808239	1129.60193	0.30491	0.00017252	-0.044429	-2.5138E-05	0.26048	0.00014738	565.8080562479538	82.109	1.0198	82.131	81.57	82.59	0.021866					61	36	2	0	0	0	0.38912	2	19893	19893;19931		13.042	4.2971	1	135530			7870	704	5283	5322	10717;10718	10717					0.042308789289336346
IQHEKETM	8	Unmodified	_IQHEKETM_					0	0	0		ENST00000510337.1_1_5:122971848-122972142:+|nuORF	ENST00000510337.1_1_5:122971848-122972142:+|nuORF	ENST00000510337.1_1_5:122971848-122972142:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2126770019531	2	508.247492	1014.48043	-0.099564	-5.0603E-05	0.25361	0.00012889	0.15404	7.8291E-05	508.24753940350456	31.75	0.77427	31.824	31.634	32.408	0.073782					52	35	3	0	0	0	0.35759	1	4680	4680		10.824	1.4408	1	75169			7871	6908	5284	5323	10719	10719					-0.026230667052118406
IQKPVRRGR	9	Unmodified	_IQKPVRRGR_					0	0	0		SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.3539428710938	2	555.354348	1108.69414	0.45113	0.00025054	-1.0817	-0.00060071	-0.63055	-0.00035018	555.3536337224294	95.247	0.48605	95.285	95.017	95.503	0.038872					42	19	3	0	0	0	0.3182	1	23927	23927		4.3292	4.3292	1	213000			7872	13406	5285	5324	10720	10720					0.14414446576506634
IQKPVRRGR	9	Unmodified	_IQKPVRRGR_					0	0	0		SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	555.354348	1108.69414	0.42849	0.00023796	-1.2034	-0.00066834	-0.77496	-0.00043038	555.3536681351383	95.289	0.41769	95.289	95.049	95.467	0	0.0016701	-9.3155E-05	NaN	4.3292	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153300			7873	13406	5285	5324							0.14414446576506634
IQKPVRRGR	9	Unmodified	_IQKPVRRGR_					0	0	0		SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	555.354348	1108.69414	0.45113	0.00025054	-1.0817	-0.00060071	-0.63055	-0.00035018	555.3536337224294	95.247	0.48605	95.285	95.017	95.503	0.038872	-0.0016701	4.21E-05	NaN	4.3292	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213000			7874	13406	5285	5324							0.14414446576506634
IQLDDAEAQL	10	Unmodified	_IQLDDAEAQL_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7670288085938	2	558.282586	1114.55062	0.92004	0.00051364	-3.1486	-0.0017578	-2.2286	-0.0012442	558.2805816984555	81.258	0.40526	81.258	81.056	81.461	0					24	13	3	0	0	0	0.27736	1	19838	19838		24.991	0	1	106200	+		7875	8308	5286	5325	10721	10721					-0.002074898357705024
IQLIRKKAKN	10	Unmodified	_IQLIRKKAKN_					0	0	0		ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.0540771484375	2	606.400964	1210.78738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.97	1	113.97	113.47	114.47	0								0	0	0	0.33984	1	29142	29142		0.40072	0.050084	1				7876	390	5287	5326	10722	10722					0.1904132623908481
IQMELSDYYN	10	Unmodified	_IQMELSDYYN_					0	0	0		tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.2818603515625	2	638.281728	1274.5489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.834	1	79.861	79.361	80.361	0.026436								0	0	0	0.33869	1	19253	19253		0.35063	0	1				7877	13467	5288	5327	10723	10723					-0.07738866916020015
IQMKMCRQL	9	Unmodified	_IQMKMCRQL_					0	0	0		ENSG00000206043|ENST00000579455|C18orf63	ENSG00000206043|ENST00000579455|C18orf63	ENSG00000206043|ENST00000579455|C18orf63	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2303466796875	2	575.798314	1149.58208	0.17618	0.00010144	1.2372	0.00071238	1.4134	0.00081382	575.7987555748679	50.707	0.3424	50.707	50.514	50.856	0					18	11	2	0	0	0	0.23975	1	10510	10510		14.838	1.7958	1	45636			7878	5525	5289	5328	10724	10724					0.013267651213254794
IQMRPDLK	8	Unmodified	_IQMRPDLK_					0	0	0		ENST00000471736.5_1_4:158142110-158255356:+|nuORF;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.783935546875	2	500.784044	999.553536	-0.1142	-5.7191E-05	0.13	6.5103E-05	0.0158	7.9122E-06	500.78406567414504	30.611	1.0502	30.611	30.382	31.432	0					107	53	3	0	0	0	0.53202	1	4537	4537		6.7232	0.51738	1	420280			7879	6676	5290	5329	10725	10725					0.053741068080626064
IQPDLLISL	9	Unmodified	_IQPDLLISL_					0	0	0		nc|ENSG00000163382|Q8NCW5-2|NAXE;ENSG00000163382|ENST00000368235|NAXE	nc|ENSG00000163382|Q8NCW5-2|NAXE	nc|ENSG00000163382|Q8NCW5-2|NAXE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.30712890625	2	506.307875	1010.6012	0.46672	0.0002363	-1.1065	-0.00056024	-0.6398	-0.00032393	506.30716491489005	92.4	0.30948	92.4	92.243	92.552	0					21	11	2	0	0	0	0.22083	1	23260	23260		16.149	3.1066	1	150450			7880	3896	5291	5330	10726	10726					0.09632084279917308
IQQALFFNF	9	Unmodified	_IQQALFFNF_					0	0	0		nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2982788085938	2	564.297842	1126.58113	0.19625	0.00011075	0.13901	7.8445E-05	0.33527	0.00018919	564.2977793800886	90.126	0.40062	90.126	89.984	90.384	0					26	16	2	0	0	0	0.0569	1	22565	22565		41.84	20.303	1	341240			7881	1420	5292	5331	10727	10727					0.02290333339942663
IQQALFFNF	9	Unmodified	_IQQALFFNF_					0	0	0		nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2979125976562	2	564.297842	1126.58113	0.086764	4.8961E-05	0.32735	0.00018472	0.41412	0.00023368	564.2979688086245	90.056	0.3165	90.09	89.987	90.303	0.034065					20	13	2	0	0	0	0.03472	2	22355	22355;22410		47.749	27.334	1	446340			7882	1420	5292	5331	10728;10729	10728					0.02290333339942663
IQQNIRAD	8	Unmodified	_IQQNIRAD_					0	0	0		nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2664489746094	2	479.259248	956.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.488	1	34.488	33.988	34.988	0								0	0	0	0.38822	1	5632	5632		2.0598	0	1				7883	1911	5293	5332	10730	10730					0.02395115123601954
IQYKLSFL	8	Unmodified	_IQYKLSFL_					0	0	0			REV__ENST00000486530.1_1_3:148847510-148871436:+|nuORF	REV__ENST00000486530.1_1_3:148847510-148871436:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2971496582031	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.608	1	93.645	93.145	94.145	0.037369								0	0	0	0.38822	1	23442	23442		4.756	0	1		+		7884	9955	5294	5333	10731	10731					0.07520118971035572
IQYRKQSMPL	10	Unmodified	_IQYRKQSMPL_					0	0	0		GABRB3|p.R409L|1|0.26|ENSG00000166206|chr15:26547989-26547989|C/A|missense_variant	GABRB3|p.R409L|1|0.26|ENSG00000166206|chr15:26547989-26547989|C/A|missense_variant	GABRB3|p.R409L|1|0.26|ENSG00000166206|chr15:26547989-26547989|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.9014587402344	3	421.900786	1262.68053	0.81044	0.00034192	-0.024214	-1.0216E-05	0.78622	0.00033171	421.90061410857015	65.306	0.56224	65.306	65.112	65.675	0					54	20	4	0	0	0	0.44246	1	15063	15063		3.3196	0	1	406860			7885	7341	5295	5334	10732	10732					0.05969407962402329
IRAPEEPRWPL	11	Unmodified	_IRAPEEPRWPL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.2542419433594	3	455.254216	1362.74082	0.45134	0.00020548	-0.35203	-0.00016026	0.099311	4.5212E-05	455.2541452367865	47.856	0.75549	47.856	47.583	48.339	0					51	25	3	0	0	0	0.40087	1	9728	9728		4.1166	2.3744	1	234160	+		7886	9827	5296	5335	10733	10733					0.07395841617130827
IRAPEEPRWPL	11	Unmodified	_IRAPEEPRWPL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2543029785156	3	455.254216	1362.74082	0.44144	0.00020097	0.61631	0.00028058	1.0577	0.00048154	455.25488261544723	47.716	0.76096	47.796	47.458	48.219	0.080032					61	29	3	0	0	0	0.37201	1	9544	9544		9.7643	5.6476	1	235850	+		7887	9827	5296	5335	10734	10734					0.07395841617130827
IRCSSDWP	8	Unmodified	_IRCSSDWP_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2227478027344	2	482.221277	962.428001	-0.369	-0.00017794	3.766	0.001816	3.397	0.0016381	482.2235157110189	42.97	0.38358	43.06	42.915	43.299	0.089767					23	14	2	0	0	0	0.53894	1	8088	8088		2.0598	0.40713	1	38749			7888	1552	5297	5336	10735	10735					-0.05471605048182937
IREARKHLQ	9	Unmodified	_IREARKHLQ_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.84326171875	2	575.843813	1149.67307	0.29197	0.00016813	-0.933	-0.00053726	-0.64103	-0.00036913	575.8431195914848	83.637	1.1014	83.658	83.194	84.295	0.021744					85	39	3	0	0	0	0.33978	1	20353	20353		1.4819	0.28856	1	337530	+		7889	8109	5298	5337	10736	10736					0.10422436476983421
IRGRALVRFW	10	Unmodified	_IRGRALVRFW_					0	0	0		tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.4414672851562	2	637.385648	1272.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.989	1	58.989	58.489	59.489	0								0	0	0	0.33984	1	13047	13047		0.40072	0	1				7890	13508	5299	5338	10737	10737					0.1312759264469605
IRHLKLPVKRL	11	Unmodified	_IRHLKLPVKRL_					0	0	0			REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF	REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.3215637207031	3	458.313629	1371.91906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.85	1	109.87	109.37	110.37	0.017242								0	0	0	0.34083	1	28094	28094		0.45452	0.35968	1		+		7891	11615	5300	5339	10738	10738					0.24797556326825543
IRHMKKYM	8	Unmodified	_IRHMKKYM_					0	0	0			REV__nc|ENSG00000154556|O94875-11|SORBS2	REV__nc|ENSG00000154556|O94875-11|SORBS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2671508789062	2	553.801714	1105.58888	0.55794	0.00030899	-0.6788	-0.00037592	-0.12085	-6.6928E-05	553.801614325805	38.228	0.36968	38.315	38.118	38.488	0.08688					18	13	2	0	0	0	0.3576	1	6632	6632		0.69038	0	1	20871	+		7892	9715	5301	5340	10739	10739					0.04030446064211901
IRIKWTKL	8	Unmodified	_IRIKWTKL_					0	0	0		ENSG00000145681|ENST00000274341|HAPLN1	ENSG00000145681|ENST00000274341|HAPLN1	ENSG00000145681|ENST00000274341|HAPLN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8660278320312	2	529.347669	1056.68079	0.29712	0.00015728	1.1028	0.00058374	1.3999	0.00074102	529.3481066337189	111.9	0.14614	111.91	111.88	112.03	0.014595					32	19	3	0	0	0	0.3576	1	28529	28529		7.2892	0	1	1184000			7893	3256	5302	5341	10740	10740					0.15471195744544275
IRIMSYVMLPC	11	Unmodified	_IRIMSYVMLPC_					0	0	0		ENST00000406117.6_1_22:44322822-44359208:+|nuORF;nc|ENSG00000100344|Q9NST1-2|PNPLA3;ENSG00000100344|ENST00000216180|PNPLA3	ENST00000406117.6_1_22:44322822-44359208:+|nuORF	ENST00000406117.6_1_22:44322822-44359208:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.5629577636719	3	442.564128	1324.67056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.534	1	45.62	45.12	46.12	0.085617								0	0	0	0.33405	1	8835	8835		2.8433	0.4085	1				7894	1187	5303	5342	10741	10741					0.021207606411508095
IRKELKRKKKW	11	Unmodified	_IRKELKRKKKW_					0	0	0		nc|ENSG00000291135|Q92637-3|FCGR1BP;nc|ENSG00000291135|Q92637|FCGR1BP;nc|ENSG00000150337|P12314-2|FCGR1A;ENSG00000150337|ENST00000369168|FCGR1A	nc|ENSG00000291135|Q92637-3|FCGR1BP	nc|ENSG00000291135|Q92637-3|FCGR1BP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.74871826171875	3	504.999822	1511.97764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.646	1	71.646	71.146	72.146	0								0	0	0	0.34212	1	16907	16907		0	0	1				7895	3426	5304	5343	10742	10742					0.242126129012604
IRLASPYIF	9	Unmodified	_IRLASPYIF_					0	0	0			REV__ENSG00000196110|ENST00000591998|ZNF699	REV__ENSG00000196110|ENST00000591998|ZNF699	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7584228515625	2	540.316035	1078.61752	0.70945	0.00038333	-0.00045226	-2.4436E-07	0.70899	0.00038308	540.3159163180464	79.869	0.51733	79.869	79.562	80.079	0					31	17	2	0	0	0	0.25746	1	19473	19473		3.2813	0	1	96752	+		7896	10798	5305	5344	10743	10743					0.08135210236628154
IRLNPDPSI	9	Unmodified	_IRLNPDPSI_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7926025390625	2	512.792924	1023.57129	-0.16889	-8.6604E-05	-0.26712	-0.00013698	-0.436	-0.00022358	512.7927187558162	44.819	0.68921	44.819	44.582	45.271	0					65	24	4	0	0	0	0.22083	1	8834	8834		16.149	0.90062	1	682370	+		7897	9593	5306	5345	10744	10744					0.0604514533456495
IRLNPDPSI	9	Unmodified	_IRLNPDPSI_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7930908203125	2	512.792924	1023.57129	0.044061	2.2594E-05	-0.23551	-0.00012077	-0.19145	-9.8175E-05	512.7927014554622	44.735	0.70105	44.822	44.564	45.265	0.08754					61	25	3	0	0	0	0.24767	1	8665	8665		13.042	0.80181	1	476360	+		7898	9593	5306	5345	10745	10745					0.0604514533456495
IRLRKNMIVM	10	Unmodified	_IRLRKNMIVM_					0	0	0			REV__ENSG00000196184|ENST00000423932|OR10J1	REV__ENSG00000196184|ENST00000423932|OR10J1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.385986328125	2	637.383403	1272.75225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.704	1	60.778	60.278	61.278	0.073421								0	0	0	0.33979	1	13435	13435		0.45834	0.057624	1		+		7899	10804	5307	5346	10746	10746					0.12678624115233106
IRPEDDDEKQ	10	Unmodified	_IRPEDDDEKQ_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENST00000584025.1_1_17:73738673-73744941:+|nuORF	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.291259765625	2	622.791306	1243.56806	0.0019887	1.2385E-06	-0.43955	-0.00027375	-0.43756	-0.00027251	622.7886447570164	61.737	1.0361	61.737	61.595	62.631	0					116	44	4	0	0	0	0.36006	1	13888	13888		16.149	1.7437	1	664850			7900	2575	5308	5347	10747	10747					-0.043981943007793234
IRTDSTDFF	9	Unmodified	_IRTDSTDFF_					0	0	0		nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.8008422851562	2	551.264196	1100.51384	0.45897	0.00025301	-2.0474	-0.0011287	-1.5884	-0.00087565	551.2634300129703	82.48	0.54671	82.502	82.102	82.648	0.021751					27	19	2	0	0	0	0.25281	1	19954	19954		6.7232	0.51738	1	61300			7901	2905	5309	5348	10748	10748					-0.03239741661673179
IRVALHTF	8	Unmodified	_IRVALHTF_					0	0	0			REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13	REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2776794433594	2	478.787444	955.560336	0.32071	0.00015355	-1.5565	-0.00074522	-1.2358	-0.00059167	478.786705419846	82.335	0.36369	82.335	82.17	82.534	0					15	12	2	0	0	0	0.3576	1	20136	20136		2.5775	0	1	58750	+		7902	9847	5310	5349	10749	10749					0.08077787750926291
IRVWFQNKR	9	Unmodified	_IRVWFQNKR_					0	0	0		ENSG00000159556|ENST00000290759|ISL2;ENSG00000016082|ENST00000230658|ISL1	ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2434997558594	3	416.243763	1245.70946	-0.19378	-8.0659E-05	-0.17088	-7.1127E-05	-0.36466	-0.00015179	416.2437220500533	43.502	3.6434	43.591	42.753	46.397	0.088924					422	135	5	0	0	0	0.31389	2	8628	8628;8721		4.897	0.36815	1	2861300			7903	3733	5311	5350	10750;10751	10750					0.0964331337368094
IRWEEPYHD	9	Unmodified	_IRWEEPYHD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7881469726562	2	622.78837	1243.56219	0.0019887	1.2385E-06	4.2757	0.0026629	4.2777	0.0026641	622.7886447570164	61.737	1.0361	61.737	61.595	62.631	0					116	44	4	0	0	0	0.30005	1	13961	13961		6.7232	0.51738	1	664850			7904	3593	5312	5351	10752	10752					-0.049852480217850825
IRYELIARA	9	Unmodified	_IRYELIARA_					0	0	0			REV__ATHL1|p.R327C|1|0.47|ENSG00000142102|chr11:292048-292048|C/T|missense_variant	REV__ATHL1|p.R327C|1|0.47|ENSG00000142102|chr11:292048-292048|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.8303833007812	2	552.82984	1103.64513	0.29707	0.00016423	0.24517	0.00013554	0.54224	0.00029977	552.8302978968636	50.837	0.43744	50.837	50.624	51.062	0					36	14	4	0	0	0	0.22083	2	10548	10548;10601		16.149	2.5342	1	367990	+		7905	7726	5313	5352	10753;10754	10753					0.09745113496910562
IRYELIARA	9	Unmodified	_IRYELIARA_					0	0	0			REV__ATHL1|p.R327C|1|0.47|ENSG00000142102|chr11:292048-292048|C/T|missense_variant	REV__ATHL1|p.R327C|1|0.47|ENSG00000142102|chr11:292048-292048|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.8306884765625	2	552.82984	1103.64513	0.46546	0.00025732	-0.066936	-3.7004E-05	0.39853	0.00022032	552.8295661995144	50.797	0.71746	50.867	50.666	51.383	0.069874					49	27	3	0	0	0	0.2125	1	10391	10391		17.113	4.5813	1	383430	+		7906	7726	5313	5352	10755	10755					0.09745113496910562
ISAWIYGLGL	10	Unmodified	_ISAWIYGLGL_					0	0	0		nc|ENSG00000136297|Q8IY49-3|MMD2;ENSG00000136297|ENST00000401401|MMD2;nc|ENSG00000136297|Q8IY49|MMD2	nc|ENSG00000136297|Q8IY49-3|MMD2	nc|ENSG00000136297|Q8IY49-3|MMD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8082885742188	2	546.808042	1091.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.61	1	103.65	103.15	104.15	0.03791								0	0	0	0.33681	1	26470	26470		3.9444	0	1				7907	2789	5314	5353	10756	10756					0.059395039997752974
ISAYMKSSRFL	11	Unmodified	_ISAYMKSSRFL_					0	0	0		ENSG00000213366|ENST00000241337|GSTM2;ENSG00000134184|ENST00000309851|GSTM1;ENSG00000168765|ENST00000369836|GSTM4;ENST00000493171.5_1_1:110201318-110203873:+|nuORF;ENST00000496578.3_1_1:110213770-110217455:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000134184|P09488-2|GSTM1;ENST00000493395.1_1_1:110202524-110203873:+|nuORF;ENST00000369833.5_1_1:110203720-110203873:+|nuORF	ENSG00000213366|ENST00000241337|GSTM2	ENSG00000213366|ENST00000241337|GSTM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.7600402832031	3	434.900674	1301.68019	0.72083	0.00031349	-3.3623	-0.0014623	-2.6415	-0.0011488	434.89887322485964	54.922	0.3044	54.922	54.735	55.04	0					18	10	2	0	0	0	0.31029	1	11825	11825		9.2438	1.2984	1	75976			7908	5543	5315	5354	10757	10757					0.041419882425316246
ISCHYSRR	8	Unmodified	_ISCHYSRR_					0	0	0		ENSG00000181418|ENST00000421952|DDN	ENSG00000181418|ENST00000421952|DDN	ENSG00000181418|ENST00000421952|DDN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.77880859375	2	511.253443	1020.49233	-0.14581	-7.4546E-05	-0.86097	-0.00044017	-1.0068	-0.00051472	511.2530712417378	28.527	0.22809	28.527	28.391	28.619	0					13	9	2	0	0	0	0.3576	1	3866	3866		5.2307	0.90143	1	17892			7909	4837	5316	5355	10758	10758					-0.017094051713684166
ISCVWHCSI	9	Unmodified	_ISCVWHCSI_					0	0	0		ENST00000486007.1_1_7:10977712-10978495:-|nuORF;ENST00000470761.5_1_7:10973306-10978495:-|nuORF	ENST00000486007.1_1_7:10977712-10978495:-|nuORF	ENST00000486007.1_1_7:10977712-10978495:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7523803710938	2	524.241155	1046.46776	-0.16092	-8.4363E-05	-0.92996	-0.00048752	-1.0909	-0.00057189	524.24079243461	28.901	0.38365	28.901	28.771	29.155	0					41	22	3	0	0	0	0.33704	1	4001	4001		1.8442	0.19162	1	31784			7910	6663	5317	5356	10759	10759					-0.05361801369122077
ISDEMSKTALW	11	Unmodified	_ISDEMSKTALW_					0	0	0		nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10;ENST00000446228.5_1_2:162758621-162834241:+|nuORF	nc|ENSG00000144290|Q6U841-2|SLC4A10	nc|ENSG00000144290|Q6U841-2|SLC4A10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.8145141601562	2	640.813196	1279.61184	0.24592	0.00015759	1.3992	0.00089665	1.6452	0.0010542	640.8142529781054	86.402	0.36578	86.427	86.197	86.563	0.025169					23	13	2	0	0	0	0.31637	1	21268	21268		16.149	0.30192	1	108860			7911	3201	5318	5357	10760	10760					-0.016783011279812854
ISDEMSKTALW	11	Unmodified	_ISDEMSKTALW_					0	0	0		nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10;ENST00000446228.5_1_2:162758621-162834241:+|nuORF	nc|ENSG00000144290|Q6U841-2|SLC4A10	nc|ENSG00000144290|Q6U841-2|SLC4A10	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	640.813196	1279.61184	0.07854	5.033E-05	1.4224	0.00091148	1.5009	0.00096181	640.8145598129995	86.423	0.29614	86.423	86.289	86.585	0	-0.0019683	2.3093E-05	NaN	16.149	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111760			7912	3201	5318	5357							-0.016783011279812854
ISDFFIADMP	10	Unmodified	_ISDFFIADMP_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2879028320312	2	578.273175	1154.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.066	1	84.066	83.566	84.566	0								0	0	0	0.28665	1	20701	20701		19.257	0	1		+		7913	9037	5319	5358	10761	10761					-0.039287427311819556
ISDLHVPVL	9	Unmodified	_ISDLHVPVL_					0	0	0			REV__ENSG00000169413|ENST00000304677|RNASE6	REV__ENSG00000169413|ENST00000304677|RNASE6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7929992675781	2	496.792392	991.570232	0.52302	0.00025983	0.13125	6.5206E-05	0.65427	0.00032504	496.7923388560864	63.955	0.54924	64.026	63.797	64.346	0.071014					31	18	2	0	0	0	0.22344	1	14488	14488		15.847	6.4997	1	261260	+		7914	10173	5320	5359	10762	10762					0.07410930965670559
ISELEDLSEL	10	Unmodified	_ISELEDLSEL_					0	0	0		SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.291259765625	2	574.290076	1146.5656	0.1274	7.3162E-05	1.1699	0.00067184	1.2973	0.000745	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.023231	1	5952	5952		65.235	3.8776	1	8357100			7915	3878	5321	5360	10763	10763					-0.0018204275843345386
ISELEDLSEL	10	Unmodified	_ISELEDLSEL_					0	0	0		SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2910766601562	2	574.290076	1146.5656	0.16034	9.2081E-05	1.1336	0.00065102	1.2939	0.0007431	574.2910473762183	35.506	4.4992	35.585	35.279	39.778	0.078827					435	173	5	0	0	0	0.011745	2	5801	5801;5843		74.929	13.572	1	7724500			7916	3878	5321	5360	10764;10765	10764					-0.0018204275843345386
ISFFISQIF	9	Unmodified	_ISFFISQIF_					0	0	0			REV__nc|ENSG00000079739|P36871-2|PGM1	REV__nc|ENSG00000079739|P36871-2|PGM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.302734375	2	551.302593	1100.59063	0.71413	0.0003937	4.1861	0.0023078	4.9002	0.0027015	551.8048811390871	97.984	0.48773	98.024	97.781	98.269	0.040855					74	23	4	0	0	0	0.23216	1	24767	24767		14.838	0	1	225110	+		7917	12756	5322	5361	10766	10766					0.04436101625469746
ISGLNRRQ	8	Unmodified	_ISGLNRRQ_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2829284667969	2	472.275232	942.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.146	1	94.146	93.646	94.646	0								0	0	0	0.38822	1	23764	23764		2.3027	0	1		+		7918	9378	5323	5362	10767	10767					0.062345275974166725
ISHHTTVPLT	10	Unmodified	_ISHHTTVPLT_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3034057617188	2	553.303655	1104.59276	-0.31641	-0.00017507	-0.10667	-5.902E-05	-0.42308	-0.00023409	553.3035946952361	41.133	1.4833	41.133	40.911	42.395	0					93	53	5	0	0	0	0.42335	2	7732	7732;7948		9.3831	0	1	1167500			7919	1964	5324	5363	10768;10769	10768					0.04464530363270569
ISHHTTVPLT	10	Unmodified	_ISHHTTVPLT_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3031616210938	2	553.303655	1104.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.94	1	42.03	41.53	42.53	0.089764								0	0	0	0.33528	1	7751	7751		5.7319	0	1				7920	1964	5324	5363	10770	10770					0.04464530363270569
ISIDRYTAVVM	11	Unmodified	_ISIDRYTAVVM_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.87109375	2	634.339381	1266.66421	0.078259	4.9643E-05	-1.8399	-0.0011671	-1.7617	-0.0011175	634.3383640320588	90.025	0.44758	90.025	89.834	90.282	0					30	18	3	0	0	0	0.30989	1	22557	22557		10.074	0	1	591440			7921	3466	5325	5364	10771	10771					0.041542820056065466
ISITCAYTSF	10	Unmodified	_ISITCAYTSF_					0	0	0		SLC35G2|p.M260Rfs*3|1|0.33|ENSG00000168917|chr3:136855239-136855239|T/-|frameshift_variant;ENSG00000168917|ENST00000446465|SLC35G2	SLC35G2|p.M260Rfs*3|1|0.33|ENSG00000168917|chr3:136855239-136855239|T/-|frameshift_variant	SLC35G2|p.M260Rfs*3|1|0.33|ENSG00000168917|chr3:136855239-136855239|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8303833007812	2	553.26535	1104.51615	0.38306	0.00021193	0.016637	9.2048E-06	0.39969	0.00022114	553.2637014623366	87.186	0.61668	87.213	87.067	87.684	0.027573					44	24	3	0	0	0	0.31731	1	21557	21557		6.2058	0.47393	1	211220			7922	4313	5326	5365	10772	10772					-0.03193029248222956
ISLEEVSNAF	10	Unmodified	_ISLEEVSNAF_					0	0	0		tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2575073242188	2	554.779679	1107.5448	0.318	0.00017642	-0.48687	-0.00027011	-0.16887	-9.3688E-05	554.7794581771067	51.644	0.32907	51.644	51.501	51.83	0					21	10	3	0	0	0	0.31747	1	10864	10864		5.7319	0	1	71903			7923	13644	5327	5366	10773	10773					-0.00466588347421748
ISLSTAPWN	9	Unmodified	_ISLSTAPWN_					0	0	0			REV__nc|ENSG00000255374|P59539|TAS2R45	REV__nc|ENSG00000255374|P59539|TAS2R45	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2322692871094	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.693	1	66.758	66.258	67.258	0.065071								0	0	0	0.27427	1	15254	15254		4.3292	0	1		+		7924	12904	5328	5367	10774	10774					0.008294810348388637
ISNIYLNVF	9	Unmodified	_ISNIYLNVF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.32421875	2	541.797675	1081.5808	0.55801	0.00030233	0.081071	4.3924E-05	0.63908	0.00034625	541.7978728866896	69.92	0.37949	69.92	69.791	70.17	0					25	13	2	0	0	0	0.23478	1	16377	16377		17.113	7.7298	1	152210	+		7925	10359	5329	5368	10775	10775					0.04326913620070627
ISNNHLDEW	9	Unmodified	_ISNNHLDEW_					0	0	0			REV__ENST00000504126.1_1_4:128842663-128843132:-|nuORF	REV__ENST00000504126.1_1_4:128842663-128843132:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2026977539062	2	564.259445	1126.50434	-0.23114	-0.00013043	-1.9486	-0.0010995	-2.1798	-0.00123	564.258249181904	24.812	0.53843	24.812	24.672	25.211	0					60	39	2	0	0	0	0.25875	1	2900	2900		1.8442	0	1	42273	+		7926	9978	5330	5369	10776	10776					-0.05385509947200262
ISPAHEGAV	9	Unmodified	_ISPAHEGAV_					0	0	0			REV__ENST00000405257.1_1_6:4703010-4703685:+|nuORF	REV__ENST00000405257.1_1_6:4703010-4703685:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7298583984375	2	440.729792	879.445031	0.087291	3.8472E-05	0.21326	9.3992E-05	0.30055	0.00013246	440.7297881409395	33.363	0.88298	33.363	33.175	34.058	0					57	32	3	0	0	0	0.25979	1	5331	5331		11.64	0	1	120470	+		7927	11761	5331	5370	10777	10777					0.00048638829287028784
ISPGRYFLL	9	Unmodified	_ISPGRYFLL_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3085327148438	2	533.30821	1064.60187	0.53733	0.00028656	0.19232	0.00010256	0.72965	0.00038913	533.3082534869296	67.368	1.7577	67.368	67.095	68.852	0					168	65	4	0	0	0	0.020768	6	15624	15577;15624;15663;15748;15772;15798		57.722	15.627	1	2282100			7928	4532	5332	5371	10778;10779;10780;10781;10782;10783	10779					0.07214923719629951
ISPGRYFLL	9	Unmodified	_ISPGRYFLL_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3084716796875	2	533.30821	1064.60187	0.86796	0.00046289	-0.084199	-4.4904E-05	0.78377	0.00041799	533.3081518812712	67.306	1.5657	67.371	67.101	68.667	0.065071					135	56	4	0	0	0	0.081383	4	15461	15413;15461;15504;15552		36.506	9.5217	1	2392000			7929	4532	5332	5371	10784;10785;10786;10787	10785					0.07214923719629951
ISPLAQAVRSS	11	Unmodified	_ISPLAQAVRSS_					0	0	0		ENSG00000232810|ENST00000449264|TNF	ENSG00000232810|ENST00000449264|TNF	ENSG00000232810|ENST00000449264|TNF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.8214111328125	2	564.822212	1127.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.833	1	84.856	84.356	85.356	0.023125								0	0	0	0.32709	1	20774	20774		5.2969	0.76802	1				7930	5622	5333	5372	10788	10788					0.07116201909047959
ISPYRLPHC	9	Unmodified	_ISPYRLPHC_					0	0	0			REV__OR56A1|p.N198*|1|0.1|ENSG00000180934|chr11:6027113-6027114|-/A|frameshift_variant	REV__OR56A1|p.N198*|1|0.1|ENSG00000180934|chr11:6027113-6027114|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2824096679688	2	543.281669	1084.54878	0.038705	2.1028E-05	2.5187	0.0013684	2.5574	0.0013894	543.2830034235177	33.178	0.31153	33.252	33.089	33.401	0.074322					15	12	2	0	0	0	0.3354	1	5119	5119		2.0598	0.40713	1	18089	+		7931	10518	5334	5373	10789	10789					0.009892226652937097
ISQPQEPEL	9	Unmodified	_ISQPQEPEL_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.7666625976562	2	520.766571	1039.51859	0.18552	9.661E-05	-0.26133	-0.00013609	-0.075812	-3.948E-05	520.7664487765984	50.988	0.97547	50.988	50.707	51.682	0					83	32	4	0	0	0	0.00066972	3	10632	10588;10632;10677		128.93	7.3733	1	4063300			7932	7489	5335	5374	10790;10791;10792	10791					0.0004114248110909102
ISQPQEPEL	9	Unmodified	_ISQPQEPEL_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.7666015625	2	520.766571	1039.51859	0.23584	0.00012282	-0.19935	-0.00010382	0.036488	1.9002E-05	520.7664493835161	50.937	0.76518	51.006	50.738	51.503	0.069878					82	29	4	0	0	0	0.00066972	2	10481	10432;10481		128.93	7.2463	1	3570200			7933	7489	5335	5374	10793;10794	10794					0.0004114248110909102
ISRITTRQ	8	Unmodified	_ISRITTRQ_					0	0	0		ENST00000314940.6_1_5:137089244-137089340:-|nuORF	ENST00000314940.6_1_5:137089244-137089340:-|nuORF	ENST00000314940.6_1_5:137089244-137089340:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7908630371094	2	487.790715	973.566878	0.22424	0.00010938	0.09416	4.593E-05	0.3184	0.00015531	487.79066666432016	76.857	0.8513	76.896	76.332	77.183	0.03923					53	30	2	0	0	0	0.53858	1	18292	18292		2.3027	0	1	269090			7934	6015	5336	5375	10795	10795					0.07903680911658739
ISRLPYGP	8	Unmodified	_ISRLPYGP_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4;ENST00000600350.1_1_19:39667133-39669216:+|nuORF	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.2574157714844	2	451.758352	901.502152	-0.14243	-6.4345E-05	-3.3568	-0.0015165	-3.4992	-0.0015808	451.75680849877546	32.912	0.26975	32.986	32.819	33.089	0.074322					14	10	2	0	0	0	0.3576	1	5039	5039		2.3027	0	1	14652			7935	2478	5337	5376	10796	10796					0.0474610610565378
ISRLPYGP	8	Unmodified	_ISRLPYGP_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4;ENST00000600350.1_1_19:39667133-39669216:+|nuORF	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	451.758352	901.502152	0.029394	1.3279E-05	-3.3787	-0.0015263	-3.3493	-0.0015131	451.75698205377734	32.964	0.39861	32.964	32.756	33.155	0	-0.010966	-7.3753E-06	NaN	2.3027	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21203			7936	2478	5337	5376							0.0474610610565378
ISRMNQCSQFF	11	Unmodified	_ISRMNQCSQFF_					0	0	0			REV__TLR1|p.K515N|1|0.74|ENSG00000174125|chr4:38797287-38797287|C/A|missense_variant	REV__TLR1|p.K515N|1|0.74|ENSG00000174125|chr4:38797287-38797287|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.5440979003906	3	454.209402	1359.60638	0.32485	0.00014755	0.23373	0.00010616	0.55859	0.00025372	454.5438597738855	63.449	0.44989	63.52	63.31	63.76	0.071018					29	16	2	0	0	0	0.39824	1	14247	14247		4.7159	1.1289	1	146380	+		7937	13029	5338	5377	10797	10797					-0.05904303191459803
ISRMNQCSQFF	11	Unmodified	_ISRMNQCSQFF_					0	0	0			REV__TLR1|p.K515N|1|0.74|ENSG00000174125|chr4:38797287-38797287|C/A|missense_variant	REV__TLR1|p.K515N|1|0.74|ENSG00000174125|chr4:38797287-38797287|C/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	454.209402	1359.60638	0.6014	0.00027316	-0.34337	-0.00015596	0.25802	0.0001172	454.2093268788319	63.475	0.38802	63.475	63.345	63.733	0	-0.022571	-0.00049733	NaN	4.7159	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204020	+		7938	13029	5338	5377							-0.05904303191459803
ISRMNQCSQFF	11	Unmodified	_ISRMNQCSQFF_					0	0	0			REV__TLR1|p.K515N|1|0.74|ENSG00000174125|chr4:38797287-38797287|C/A|missense_variant	REV__TLR1|p.K515N|1|0.74|ENSG00000174125|chr4:38797287-38797287|C/A|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	454.209402	1359.60638	0.32485	0.00014755	0.23373	0.00010616	0.55859	0.00025372	454.5438597738855	63.449	0.44989	63.52	63.31	63.76	0.071018	0.022571	0.00028905	NaN	4.7159	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146380	+		7939	13029	5338	5377							-0.05904303191459803
ISSCKMSMPL	10	Unmodified	_ISSCKMSMPL_					0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|41	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|41	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2919311523438	2	548.763606	1095.51266	0.59209	0.00032492	-0.21218	-0.00011644	0.37991	0.00020848	548.7632591156838	70.285	0.41301	70.285	70.142	70.555	0					34	15	3	0	0	0	0.30541	1	16523	16523		19.257	2.3147	1	249590	+		7940	7770	5339	5378	10798	10798					-0.03127738618081821
ISSCKMSMPL	10	Unmodified	_ISSCKMSMPL_					0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|41	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|41	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.291748046875	2	548.763606	1095.51266	0.56907	0.00031229	-0.37539	-0.000206	0.19369	0.00010629	548.7633745617896	70.259	0.34914	70.32	70.128	70.477	0.060562					27	13	3	0	0	0	0.30541	1	16351	16351		19.257	2.3147	1	148540	+		7941	7770	5339	5378	10799	10799					-0.03127738618081821
ISSWEDTFN	9	Unmodified	_ISSWEDTFN_					0	0	0			REV__nc|ENSG00000143164|Q58WW2|DCAF6	REV__nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.740478515625	2	549.740554	1097.46655	0.13378	7.3544E-05	0.40393	0.00022206	0.53771	0.0002956	549.740540328147	86.683	0.55429	86.683	86.438	86.992	0					52	22	4	0	0	0	0.047633	1	21483	21483		43.858	3.6191	1	901550	+		7942	9451	5340	5379	10800	10800					-0.0782802093265218
ISTEHDPVL	9	Unmodified	_ISTEHDPVL_					0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7613220214844	2	505.761289	1009.50803	-0.21595	-0.00010922	0.28959	0.00014646	0.073645	3.7247E-05	505.76134156750203	39.998	0.78699	39.998	39.836	40.623	0					67	27	4	0	0	0	0.047633	2	7286	7286;7328		43.858	11.553	1	473320			7943	2761	5341	5380	10801;10802	10801					0.0036515982666287528
ISTEHDPVL	9	Unmodified	_ISTEHDPVL_					0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.76129150390625	2	505.761289	1009.50803	-0.056872	-2.8764E-05	0.12676	6.4112E-05	0.069891	3.5348E-05	505.76126680409504	39.922	0.58872	40.01	39.788	40.377	0.088566					61	22	4	0	0	0	0.083124	1	7135	7135		36.127	5.4905	1	384490			7944	2761	5341	5380	10803	10803					0.0036515982666287528
ISTICAPDVL	10	Unmodified	_ISTICAPDVL_					0	0	0			REV__nc|ENSG00000130669|O96013-2|PAK4	REV__nc|ENSG00000130669|O96013-2|PAK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.761474609375	2	516.275718	1030.53688	0.57499	0.00029685	0.29745	0.00015357	0.87244	0.00045042	516.2758194033279	64.047	1.1843	64.047	63.504	64.688	0					93	41	3	0	0	0	0.33099	1	14680	14680		19.257	2.3147	1	409570	+		7945	9062	5342	5381	10804	10804					0.022835611314576454
ISTICAPDVL	10	Unmodified	_ISTICAPDVL_					0	0	0			REV__nc|ENSG00000130669|O96013-2|PAK4	REV__nc|ENSG00000130669|O96013-2|PAK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7612915039062	2	516.275718	1030.53688	0.46707	0.00024114	0.37271	0.00019242	0.83978	0.00043356	516.275810576405	64.012	1.3721	64.084	63.617	64.989	0.071014					86	48	3	0	0	0	0.38104	1	14507	14507		13.906	1.3745	1	408590	+		7946	9062	5342	5381	10805	10805					0.022835611314576454
ISVPLHELEL	10	Unmodified	_ISVPLHELEL_					0	0	0			REV__ENST00000371120.7_1_1:63249823-63269403:+|nuORF	REV__ENST00000371120.7_1_1:63249823-63269403:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.3306274414062	2	575.329339	1148.64412	0.44477	0.00025589	0.18749	0.00010787	0.63226	0.00036376	575.3296761451496	71.205	0.65175	71.263	71.056	71.707	0.058586					69	23	4	0	0	0	0.34138	1	16714	16714		18.146	1.0335	1	1072300	+		7947	11597	5343	5382	10806	10806					0.07574854337326542
ISVWEIVGQ	9	Unmodified	_ISVWEIVGQ_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000006283|O43497-27|CACNA1G	ENSG00000196557|ENST00000348261|CACNA1H	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.798095703125	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.398	1	31.471	30.971	31.971	0.073782								0	0	0	0.17567	1	4590	4590		21.747	0.20967	1				7948	5234;368	5344	5383	10807	10807					0.035903405860153725
ISVWTSER	8	Unmodified	_ISVWTSER_					0	0	0		ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2577209472656	2	489.256174	976.497795	0.21013	0.00010281	1.5807	0.00077338	1.7909	0.00087618	489.2568293917167	38.643	1.0057	38.73	38.385	39.391	0.08688					58	38	2	0	0	0	0.53202	1	6777	6777		6.7232	0.51738	1	60143			7949	5539	5345	5384	10808	10808					0.00860596892096055
ISYCPCLVLF	10	Unmodified	_ISYCPCLVLF_					0	0	0		ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.29248046875	2	579.290314	1156.56607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.2	1	101.2	100.7	101.7	0								0	0	0	0.33487	1	25910	25910		6.2058	1.4498	1				7950	3901	5346	5385	10809	10809					-0.005946178439216965
ISYIFMVLF	9	Unmodified	_ISYIFMVLF_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8090209960938	2	566.809196	1131.60384	0.18028	0.00010219	-0.59884	-0.00033943	-0.41856	-0.00023724	566.8090857531844	103.01	0.82724	103.01	102.6	103.43	0					110	56	3	0	0	0	0.16036	4	26482	26378;26406;26443;26482		23.148	6.2061	1	210760	+		7951	10667	5347	5386	10810;10811;10812;10813	10813					0.04330216413200105
ISYIFMVLF	9	Unmodified	_ISYIFMVLF_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.80908203125	2	566.809196	1131.60384	0.35761	0.0002027	-0.78446	-0.00044464	-0.42685	-0.00024194	566.8088717925829	102.92	0.84189	102.96	102.58	103.42	0.040909					163	75	3	0	0	0	0.11022	3	26240	26199;26240;26281		30.225	7.0764	1	192890	+		7952	10667	5347	5386	10814;10815;10816	10815					0.04330216413200105
ITAGLDPVGR	10	Unmodified	_ITAGLDPVGR_					0	0	0		ENST00000480159.1_1_7:100273867-100274642:+|nuORF;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant;ENSG00000172354|ENST00000303210|GNB2	ENST00000480159.1_1_7:100273867-100274642:+|nuORF	ENST00000480159.1_1_7:100273867-100274642:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.27716064453125	2	499.785099	997.555644	-0.15629	-7.811E-05	-0.37666	-0.00018825	-0.53295	-0.00026636	499.7845764115285	43.156	0.32848	43.156	42.999	43.327	0					15	10	2	0	0	0	0.44021	1	8237	8237		6.6304	0.42459	1	27740			7953	4493	5348	5387	10817	10817					0.05676858817525954
ITAGSAKAIR	10	Unmodified	_ITAGSAKAIR_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.79742431640625	2	494.300916	986.587279	0.43649	0.00021576	0.023549	1.164E-05	0.46004	0.0002274	494.3008475632414	91.784	1.359	91.821	91.532	92.891	0.03653					121	48	5	0	0	0	0.45945	1	22828	22828		2.9952	2.9952	1	1909400	+		7954	8875	5349	5388	10818	10818					0.09344851571472645
ITCEPTQEL	9	Carbamidomethyl (C)	_ITC(Carbamidomethyl (C))EPTQEL_	ITC(1)EPTQEL		ITC(42)EPTQEL		0	1	0		tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7579345703125	2	545.757889	1089.50123	0.17632	9.6225E-05	0.16321	8.9074E-05	0.33953	0.0001853	545.7578971470869	46.442	1.486	46.528	46.077	47.563	0.085617					112	68	2	0	0	0	0.0569	1	9088	9088		41.84	10.571	1	506750			7955	13658	5350	5389	10819	10819	23				-0.03994521116214855
ITCMIFHF	8	Unmodified	_ITCMIFHF_					0	0	0		ENST00000472229.1_1_6:30585642-30587522:+|nuORF	ENST00000472229.1_1_6:30585642-30587522:+|nuORF	ENST00000472229.1_1_6:30585642-30587522:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.3260803222656	2	506.243166	1010.47178	0.082283	4.1655E-05	-0.52015	-0.00026332	-0.43787	-0.00022167	506.24310699361405	72.611	0.49809	72.667	72.43	72.928	0.055939					22	16	2	0	0	0	0.3576	1	17122	17122		2.8892	0.31174	1	96202			7956	6681	5351	5390	10820	10820					-0.0330371187540095
ITDEVDELSS	10	Unmodified	_ITDEVDELSS_					0	0	0		ENST00000401044.7_1_1:59134235-59156019:-|nuORF;ENSG00000162601|ENST00000472487|MYSM1	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7554321289062	2	554.256234	1106.49791	0.16722	9.2682E-05	0.72718	0.00040304	0.8944	0.00049573	554.2567397692917	25.234	0.29346	25.33	25.137	25.431	0.096073					47	24	2	0	0	0	0.31616	1	2809	2809		10.074	0.6908	1	254840			7957	3839	5352	5391	10821	10821					-0.05107492689216997
ITDFPVSVL	9	Unmodified	_ITDFPVSVL_					0	0	0			REV__ENST00000430298.6_1_19:12222513-12222840:+|nuORF	REV__ENST00000430298.6_1_19:12222513-12222840:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.6878662109375	2	495.778951	989.543348	0.89349	0.00044297	-0.26793	-0.00013283	0.62556	0.00031014	495.778756973679	81.802	0.23842	81.802	81.632	81.87	0					11	7	2	0	0	0	0.25644	1	19963	19963		3.9444	1.3669	1	35619	+		7958	11846	5353	5392	10822	10822					0.04815822354487409
ITFDDDYSA	9	Unmodified	_ITFDDDYSA_					0	0	0		ENSG00000122012|ENST00000502798|SV2C	ENSG00000122012|ENST00000502798|SV2C	ENSG00000122012|ENST00000502798|SV2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7974853515625	2	523.719287	1045.42402	0.15311	8.0189E-05	-2.5832	-0.0013529	-2.43	-0.0012727	523.717881358748	51.777	0.20227	51.777	51.628	51.83	0					9	6	2	0	0	0	0.25174	1	10857	10857		7.2892	2.96	1	54449			7959	2170	5354	5393	10823	10823					-0.09687416060910436
ITHRVRFH	8	Unmodified	_ITHRVRFH_					0	0	0			REV__nc|ENSG00000078900|O15350-6|TP73	REV__nc|ENSG00000078900|O15350-6|TP73	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.290771484375	2	533.306867	1064.59918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.98	1	50.053	49.553	50.553	0.07312								0	0	0	0.38822	1	10174	10174		4.756	0.42677	1		+		7960	8220	5355	5394	10824	10824					0.06946513105299346
ITHYYIETSDD	11	Unmodified	_ITHYYIETSDD_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.8698425292969	3	452.869985	1355.58813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.39	1	119.4	118.9	119.9	0.013062								0	0	0	0.34185	1	30000	30000		0.094841	0	1				7961	3464	5356	5395	10825	10825					-0.07544443360825426
ITITGNADL	9	Unmodified	_ITITGNADL_					0	0	0		nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	nc|ENSG00000105699|Q86X29-5|LSR	nc|ENSG00000105699|Q86X29-5|LSR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2213439941406	2	459.250557	916.486562	-0.2755	-0.00012652	-0.55731	-0.00025594	-0.83281	-0.00038247	459.250610635893	42.747	0.88271	42.837	42.571	43.454	0.089764					50	32	2	0	0	0	0.24929	1	7986	7986		9.3831	1.473	1	69748			7962	1485	5357	5396	10826	10826					0.024977747979505693
ITITGNADL	9	Unmodified	_ITITGNADL_					0	0	0		nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	nc|ENSG00000105699|Q86X29-5|LSR	nc|ENSG00000105699|Q86X29-5|LSR	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	459.250557	916.486562	-0.17903	-8.2219E-05	-0.81347	-0.00037359	-0.9925	-0.0004558	459.2505023671783	42.831	1.1796	42.831	42.365	43.544	0	-0.0029885	-0.00012683	NaN	9.3831	48	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69430			7963	1485	5357	5396							0.024977747979505693
ITKAKVKSSST	11	Unmodified	_ITKAKVKSSST_					0	0	0			REV__nc|ENSG00000183401|P0C7I6-6|CCDC159	REV__nc|ENSG00000183401|P0C7I6-6|CCDC159	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7689819335938	2	575.34552	1148.67649	0.57175	0.00032895	-0.27716	-0.00015946	0.29459	0.00016949	575.3452499626436	92.583	0.97807	92.583	92.32	93.298	0					92	36	4	0	0	0	0.31057	1	23395	23395		5.2969	5.2969	1	666550	+		7964	10597	5358	5397	10827	10827					0.1080964174032033
ITKSNNRSHF	10	Unmodified	_ITKSNNRSHF_					0	0	0			REV__CHD2|p.K471Nfs*7|1|0.1|ENSG00000173575|chr15:92948985-92949021|AAGAAACAACCTGCATATTTAGGAGGGGAGAATCTGG/-|frameshift_variant	REV__CHD2|p.K471Nfs*7|1|0.1|ENSG00000173575|chr15:92948985-92949021|AAGAAACAACCTGCATATTTAGGAGGGGAGAATCTGG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8779602050781	3	401.879149	1202.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.798	1	24.894	24.394	25.394	0.096073								0	0	0	0.33487	1	2663	2663		3.3196	1.0669	1		+		7965	7763	5359	5398	10828	10828					0.022415494807546565
ITMFEDFDV	9	Unmodified	_ITMFEDFDV_					0	0	0			REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.762939453125	2	558.749533	1115.48451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.332	1	66.399	65.899	66.899	0.066872								0	0	0	0.23884	1	15144	15144		11.64	3.7301	1		+		7966	10592	5360	5399	10829	10829					-0.06861022002158279
ITMLEAALGL	10	Unmodified	_ITMLEAALGL_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2564086914062	2	516.293911	1030.57327	0.33404	0.00017246	-3.6866	-0.0019034	-3.3526	-0.0017309	516.2914177294246	79.618	0.35971	79.644	79.464	79.823	0.026436					20	12	2	0	0	0	0.43972	1	19228	19228		6.7232	0.99131	1	75057			7967	200;3052	5361	5400	10830	10830					0.05920438028147146
ITMQDFPIL	9	Unmodified	_ITMQDFPIL_					0	0	0			REV__ENST00000433885.2_1_9:2900352-2900442:-|nuORF	REV__ENST00000433885.2_1_9:2900352-2900442:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.268798828125	2	539.286085	1076.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.952	1	81.974	81.474	82.474	0.021866								0	0	0	0.25992	1	19895	19895		7.2892	1.0834	1		+		7968	10135	5362	5401	10831	10831					0.022401515111141634
ITPPMGWF	8	Unmodified	_ITPPMGWF_					0	0	0			REV__ENST00000451608.2_1_2:74475609-74479477:-|nuORF	REV__ENST00000451608.2_1_2:74475609-74479477:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7292785644531	2	474.736031	947.45751	0.23104	0.00010968	0.036111	1.7143E-05	0.26715	0.00012682	474.73607525449154	55.219	0.34227	55.284	55.032	55.374	0.065128					20	13	2	0	0	0	0.53771	1	11712	11712		2.8892	0	1	34317	+		7969	11933	5363	5402	10832	10832					-0.018320410320256997
ITQGNVEAL	9	Unmodified	_ITQGNVEAL_					0	0	0		ENSG00000168427|ENST00000409223|KLHL30	ENSG00000168427|ENST00000409223|KLHL30	ENSG00000168427|ENST00000409223|KLHL30	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2478332519531	2	472.756007	943.497461	0.074567	3.5252E-05	1.7763	0.00083973	1.8508	0.00087499	472.75652348515706	56.867	0.21651	56.934	56.825	57.042	0.066452					12	7	2	0	0	0	0.2094	1	12261	12261		22.736	2.3217	1	95967			7970	4290	5364	5403	10833	10833					0.023451771722420744
ITRDGFLLL	9	Unmodified	_ITRDGFLLL_					0	0	0		nc|ENSG00000087237|P11597-2|CETP;ENSG00000087237|ENST00000200676|CETP	nc|ENSG00000087237|P11597-2|CETP	nc|ENSG00000087237|P11597-2|CETP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.3133544921875	2	524.313492	1046.61243	0.75752	0.00039718	-0.42952	-0.0002252	0.32801	0.00017198	524.3131090100637	66.516	0.59672	66.516	66.274	66.871	0					33	23	2	0	0	0	0.24767	1	15347	15347		13.042	2.2185	1	202770			7971	990	5365	5404	10834	10834					0.09098906374060789
ITTAMEVCL	9	Unmodified	_ITTAMEVCL_					0	0	0			REV__ENST00000355666.5_1_21:38574758-38574866:+|nuORF	REV__ENST00000355666.5_1_21:38574758-38574866:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.287841796875	2	490.743196	979.471839	-0.15823	-7.7651E-05	0.63808	0.00031313	0.47985	0.00023548	490.743540440626	28.58	0.34069	28.662	28.492	28.833	0.082134					27	17	2	0	0	0	0.25875	1	3741	3741		1.8442	0	1	28930	+		7972	11498	5366	5405	10835	10835					-0.018717566660598095
ITWRRRQY	8	Unmodified	_ITWRRRQY_					0	0	0			REV__nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	REV__nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.828857421875	2	589.830706	1177.64686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.91	1	32.91	32.41	33.41	0								0	0	0	0.38822	1	5161	5161		0.69038	0.088878	1		+		7973	12920	5367	5406	10836	10836					0.06514167305522278
ITYDNGFLFI	10	Unmodified	_ITYDNGFLFI_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.80859375	2	601.808239	1201.60193	0.49047	0.00029517	0.36935	0.00022228	0.85982	0.00051745	601.807955648784	75.817	1.7447	75.861	75.085	76.83	0.044037					130	83	2	0	0	0	0.34138	1	17962	17962		18.146	0.011366	1	2895000			7974	96	5368	5407	10837	10837					0.009188789289510169
ITYFVSDI	8	Unmodified	_ITYFVSDI_					0	0	0			REV__ENSG00000197938|ENST00000355273|OR5H2	REV__ENSG00000197938|ENST00000355273|OR5H2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.24737548828125	2	479.250026	956.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.976	1	53.041	52.541	53.541	0.06543								0	0	0	0.37845	1	11082	11082		30.225	9.3536	1		+		7975	10878	5369	5408	10838	10838					0.005515604290508236
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.3209228515625	2	479.320786	956.627018	0.22159	0.00010621	-0.11523	-5.5233E-05	0.10635	5.0977E-05	479.3206851078836	57.527	0.47662	57.527	57.378	57.855	0					31	16	2	0	0	0	0.065576	1	12637	12637		39.95	10.868	1	189660			7976	5050	5370	5409	10839	10839					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.3207702636719	2	479.320786	956.627018	0.095514	4.5782E-05	0.16156	7.7441E-05	0.25708	0.00012322	479.32077764862834	57.485	0.44794	57.553	57.354	57.802	0.068375					28	16	2	0	0	0	0.065576	1	12486	12486		39.95	10.868	1	140610			7977	5050	5370	5409	10840	10840					0.14696978522181325
IVDANLSVL	9	Unmodified	_IVDANLSVL_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2763977050781	2	472.276575	942.538597	0.30483	0.00014396	-0.38057	-0.00017973	-0.075738	-3.5769E-05	472.27633523184426	69.92	0.49254	69.92	69.704	70.196	0					37	17	3	0	0	0	0.081719	1	16374	16374		49.933	8.0934	1	323680			7978	2833	5371	5410	10841	10841					0.06502938211713172
IVDANLSVL	9	Unmodified	_IVDANLSVL_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	472.276575	942.538597	0.11062	5.2243E-05	-0.0083915	-3.9631E-06	0.10223	4.828E-05	472.27646816708517	69.865	0.72501	69.925	69.667	70.392	0.060562	0.0025367	0.00014617	NaN	49.933	44	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217260			7979	2833	5371	5410							0.06502938211713172
IVDCITESL	9	Unmodified	_IVDCITESL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7501220703125	2	496.752075	991.489598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.726	1	82.726	82.226	83.226	0								0	0	0	0.21527	1	20293	20293		15.847	0	1				7980	3938	5372	5411	10842	10842					-0.006487181395641528
IVDEILTVM	9	Unmodified	_IVDEILTVM_					0	0	0			REV__nc|ENSG00000149054|Q9UL58-2|ZNF215	REV__nc|ENSG00000149054|Q9UL58-2|ZNF215	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7938232421875	2	516.785918	1031.55728	0.45732	0.00023634	-2.6511	-0.0013701	-2.1938	-0.0011337	516.784166840922	92.125	0.58499	92.162	91.939	92.524	0.03653					27	20	2	0	0	0	0.25979	1	23085	23085		11.64	0	1	115530	+		7981	9602	5373	5412	10843	10843					0.04276731791264865
IVDSLEPVF	9	Unmodified	_IVDSLEPVF_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.776611328125	2	509.776408	1017.53826	0.37277	0.00019003	0.057497	2.931E-05	0.43027	0.00021934	509.7763741685095	76.857	0.45274	76.896	76.67	77.123	0.03923					31	16	2	0	0	0	0.17247	1	18354	18354		21.747	6.9084	1	430620			7982	2763	5374	5413	10844	10844					0.03019518491873896
IVEEGKEIL	9	Unmodified	_IVEEGKEIL_					0	0	0		nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN	nc|ENSG00000125868|P60981-2|DSTN	nc|ENSG00000125868|P60981-2|DSTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2947998046875	2	515.294965	1028.57538	-0.091517	-4.7158E-05	0.15223	7.8444E-05	0.060713	3.1285E-05	515.2948859428682	44.184	0.52547	44.184	44.006	44.531	0					36	17	3	0	0	0	0.17305	1	8590	8590		31.268	7.0584	1	173530			7983	2318	5375	5414	10845	10845					0.06223190037621862
IVEEGKEIL	9	Unmodified	_IVEEGKEIL_					0	0	0		nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN	nc|ENSG00000125868|P60981-2|DSTN	nc|ENSG00000125868|P60981-2|DSTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.294921875	2	515.294965	1028.57538	0.047775	2.4618E-05	-0.14685	-7.5669E-05	-0.099071	-5.1051E-05	515.2947491546927	44.104	0.5086	44.193	44.003	44.512	0.088924					25	16	2	0	0	0	0.14884	1	8428	8428		36.506	3.7205	1	151040			7984	2318	5375	5414	10846	10846					0.06223190037621862
IVEFLGMSGT	10	Unmodified	_IVEFLGMSGT_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.269775390625	2	527.267893	1052.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.567	1	29.567	29.067	30.067	0								0	0	0	0.33892	1	4169	4169		1.4819	0.15237	1				7985	3857	5376	5415	10847	10847					-0.002927253855887102
IVEMLLEKLQ	10	Unmodified	_IVEMLLEKLQ_					0	0	0		nc|ENSG00000188738|Q5CZC0-2|FSIP2;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2	nc|ENSG00000188738|Q5CZC0-2|FSIP2	nc|ENSG00000188738|Q5CZC0-2|FSIP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.54351806640625	3	405.905425	1214.69445	0.51378	0.00020855	3.1942	0.0012965	3.708	0.0015051	405.9064827749311	38.533	0.20137	38.533	38.396	38.597	0					10	6	2	0	0	0	0.31853	1	6823	6823		0.62683	0.22611	1	13743			7986	5173	5377	5416	10848	10848					0.0956864067081824
IVFGLLFDT	9	Unmodified	_IVFGLLFDT_					0	0	0			REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7897338867188	2	512.789318	1023.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.565	1	95.603	95.103	96.103	0.038872								0	0	0	0.16627	1	24040	24040		23.148	0	1		+		7987	12921	5378	5417	10849	10849					0.05324412734148609
IVFLYEED	8	Unmodified	_IVFLYEED_					0	0	0			REV__ENSG00000183862|ENST00000329903|CNGA2	REV__ENSG00000183862|ENST00000329903|CNGA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2532958984375	2	514.252766	1026.49098	0.062593	3.2188E-05	0.68933	0.00035449	0.75192	0.00038668	514.2530892915521	22.747	0.26846	22.848	22.695	22.964	0.10178					49	26	3	0	0	0	0.53858	1	2098	2098		2.3027	0.24298	1	30308	+		7988	10616	5379	5418	10850	10850					-0.021207607791211558
IVFLYEED	8	Unmodified	_IVFLYEED_					0	0	0			REV__ENSG00000183862|ENST00000329903|CNGA2	REV__ENSG00000183862|ENST00000329903|CNGA2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	514.252766	1026.49098	-0.20911	-0.00010754	1.2113	0.0006229	1.0022	0.00051536	514.2533456477291	22.862	0.37417	22.862	22.776	23.15	0	0.0068148	0.00029693	NaN	2.3027	45	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26094	+		7989	10616	5379	5418							-0.021207607791211558
IVFLYEED	8	Unmodified	_IVFLYEED_					0	0	0			REV__ENSG00000183862|ENST00000329903|CNGA2	REV__ENSG00000183862|ENST00000329903|CNGA2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	514.252766	1026.49098	0.062593	3.2188E-05	0.68933	0.00035449	0.75192	0.00038668	514.2530892915521	22.747	0.26846	22.848	22.695	22.964	0.10178	-0.0068148	-0.00023988	NaN	2.3027	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30308	+		7990	10616	5379	5418							-0.021207607791211558
IVIAPVLLV	9	Unmodified	_IVIAPVLLV_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.8280944824219	2	468.828246	935.64194	0.15661	7.3422E-05	-0.31427	-0.00014734	-0.15766	-7.3916E-05	468.82807618713497	102.69	0.50116	102.69	102.2	102.71	0					71	33	3	0	0	0	0.081567	1	26362	26362		36.466	8.2929	1	801190			7991	2091	5380	5419	10851	10851					0.17154470390175902
IVIAPVLLV	9	Unmodified	_IVIAPVLLV_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.828246	935.64194	0.16997	7.9689E-05	-0.41044	-0.00019243	-0.24047	-0.00011274	468.828015612198	102.66	0.2719	102.7	102.61	102.88	0.040916	0.0074953	-4.0857E-05	NaN	36.466	69	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685540			7992	2091	5380	5419							0.17154470390175902
IVIKYKDYF	9	Unmodified	_IVIKYKDYF_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.836181640625	2	594.8368	1187.65905	0.50056	0.00029775	-0.19598	-0.00011658	0.30457	0.00018117	594.8364651156555	55.035	0.44489	55.035	54.798	55.243	0					32	16	3	0	0	0	0.25979	2	11871	11871;11884		11.64	3.4848	1	161120			7993	556	5381	5420	10852;10853	10852					0.07272346205309077
IVLMILLPPL	10	Unmodified	_IVLMILLPPL_					0	0	0			REV__ENSG00000170425|ENST00000304222|ADORA2B	REV__ENSG00000170425|ENST00000304222|ADORA2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7085571289062	2	561.371964	1120.72937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.93	1	114.93	114.43	115.43	0								0	0	0	0.33979	1	29331	29331		0.45834	0	1		+		7994	10214	5382	5421	10854	10854					0.17383928269464377
IVLSSFFW	8	Unmodified	_IVLSSFFW_					0	0	0		nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF;nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-3|SLC17A9	nc|ENSG00000101194|Q9BYT1-3|SLC17A9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7709045410156	2	499.770929	997.527304	0.43884	0.00021932	0.0081025	4.0494E-06	0.44694	0.00022337	499.7709309566012	96.467	0.46436	96.507	96.32	96.784	0.039772					43	24	2	0	0	0	0.53423	1	24289	24289		5.2307	0	1	189870			7995	1241	5383	5422	10855	10855					0.02844160908239246
IVLVQSTRT	9	Unmodified	_IVLVQSTRT_					0	0	0			REV__ENST00000521468.1_1_8:124195447-124212099:+|nuORF	REV__ENST00000521468.1_1_8:124195447-124212099:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.79241943359375	2	508.808574	1015.60259	0.29018	0.00014765	1.3696	0.00069687	1.6598	0.00084452	508.81018089984906	61.479	0.21545	61.479	61.28	61.496	0					10	7	2	0	0	0	0.25458	1	13764	13764		5.7319	1.4026	1	168340	+		7996	9577	5384	5423	10856	10856					0.09541718368666352
IVNANIFRLLF	11	Unmodified	_IVNANIFRLLF_					0	0	0			REV__ENSG00000169297|ENST00000378970|NR0B1	REV__ENSG00000169297|ENST00000378970|NR0B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.5993347167969	3	440.599324	1318.77614	0.079869	3.519E-05	0.1648	7.2612E-05	0.24467	0.0001078	440.59936334742264	69.116	0.95549	69.178	68.901	69.857	0.062126					88	35	3	0	0	0	0.3996	1	16094	16094		4.4062	4.4062	1	947040	+		7997	10167	5385	5424	10857	10857					0.12950504144941988
IVNGKADGYCF	11	Unmodified	_IVNGKADGYCF_					0	0	0			REV__ENSG00000215529|ENST00000400522|EFCAB8	REV__ENSG00000215529|ENST00000400522|EFCAB8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.1563110351562	2	593.781699	1185.54884	0.30789	0.00018282	0.60758	0.00036077	0.91546	0.00054358	593.7820176907709	56.91	1.1759	56.976	56.461	57.637	0.066452					96	43	3	0	0	0	0.31072	1	12145	12145		3.5965	3.5965	1	265570	+		7998	11017	5386	5425	10858	10858					-0.03650822125382547
IVNIETPVR	9	Unmodified	_IVNIETPVR_					0	0	0		ENST00000489731.1_1_1:120548017-120572574:-|nuORF;ENST00000479412.2_1_1:120548017-120612131:-|nuORF	ENST00000489731.1_1_1:120548017-120572574:-|nuORF	ENST00000489731.1_1_1:120548017-120572574:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2552490234375	2	520.808574	1039.60259	-0.20898	-0.00010884	0.16369	8.5251E-05	-0.045292	-2.3588E-05	520.8085791887743	45.289	0.43021	45.289	45.126	45.556	0					34	14	3	0	0	0	0.20294	1	8871	8871		24.991	4.5764	1	137480			7999	6734	5387	5426	10859	10859					0.08437718368668357
IVNIETPVR	9	Unmodified	_IVNIETPVR_					0	0	0		ENST00000489731.1_1_1:120548017-120572574:-|nuORF;ENST00000479412.2_1_1:120548017-120612131:-|nuORF	ENST00000489731.1_1_1:120548017-120572574:-|nuORF	ENST00000489731.1_1_1:120548017-120572574:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2551879882812	2	520.808574	1039.60259	0.0011352	5.9123E-07	0.19578	0.00010196	0.19691	0.00010255	520.8085425486746	45.243	0.35721	45.331	45.148	45.505	0.08754					23	13	2	0	0	0	0.20294	1	8766	8766		24.991	4.5764	1	114640			8000	6734	5387	5426	10860	10860					0.08437718368668357
IVQGPDPNL	9	Unmodified	_IVQGPDPNL_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.75848388671875	2	476.758549	951.502546	-0.072382	-3.4509E-05	0.19737	9.41E-05	0.12499	5.9591E-05	476.75852949662175	50.364	0.73208	50.364	50.154	50.886	0					68	25	4	0	0	0	0.0011184	3	10450	10402;10450;10491		121.53	58.961	1	1116700			8001	1628	5388	5427	10861;10862;10863	10862					0.024854810348415413
IVQGPDPNL	9	Unmodified	_IVQGPDPNL_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7585754394531	2	476.758549	951.502546	0.0096616	4.6063E-06	0.20816	9.9243E-05	0.21782	0.00010385	476.7584861786717	50.316	0.69762	50.389	50.097	50.795	0.07312					64	24	4	0	0	0	0.0034419	4	10245	10245;10290;10343;10395		106.94	44.435	1	903270			8002	1628	5388	5427	10864;10865;10866;10867	10864					0.024854810348415413
IVQKFWWAC	9	Unmodified	_IVQKFWWAC_					0	0	0		ENST00000372630.2_1_20:44404187-44418535:-|nuORF;ENST00000372632.6_1_20:44404187-44418535:-|nuORF;ENST00000467679.5_1_20:44404187-44417641:-|nuORF	ENST00000372630.2_1_20:44404187-44418535:-|nuORF	ENST00000372630.2_1_20:44404187-44418535:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8031005859375	2	590.802237	1179.58992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.581	1	34.581	34.081	35.081	0								0	0	0	0.29233	1	5660	5660		0.6015	0.076735	1				8003	6218	5389	5428	10868	10868					0.007309837047614565
IVRERQSL	8	Unmodified	_IVRERQSL_					0	0	0			REV__ENST00000264956.10_2_4:5815433-5815706:+|nuORF	REV__ENST00000264956.10_2_4:5815433-5815706:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7901611328125	2	500.79854	999.582528	0.31614	0.00015832	0.20208	0.0001012	0.51822	0.00025952	500.7985392421515	88.915	0.57107	88.947	88.679	89.25	0.032265					55	22	3	0	0	0	0.49441	1	22100	22100		13.508	0.97634	1	496230	+		8004	11257	5390	5429	10869	10869					0.08271967428709104
IVRSHTQMDVI	11	Unmodified	_IVRSHTQMDVI_					0	0	0			REV__ENSG00000237521|ENST00000456448|OR7E24	REV__ENSG00000237521|ENST00000456448|OR7E24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.56781005859375	3	433.567695	1297.68126	0.32627	0.00014146	-0.15359	-6.659E-05	0.17269	7.4872E-05	433.5675453437488	51.021	1.3123	51.021	50.762	52.075	0					101	44	4	0	0	0	0.33929	1	10602	10602		13.519	0	1	783010	+		8005	11054	5391	5430	10870	10870					0.0443220261145143
IVRVVLSDLHM	11	Unmodified	_IVRVVLSDLHM_					0	0	0			REV__ENST00000310078.12_1_2:228395842-228398285:+|nuORF	REV__ENST00000310078.12_1_2:228395842-228398285:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.30267333984375	3	427.916436	1280.72748	0.039729	1.7001E-05	-2.858	-0.001223	-2.8183	-0.001206	427.9150588341815	60.134	0.3494	60.207	60.016	60.366	0.072338					17	12	2	0	0	0	0.31087	1	13305	13305		2.8433	0.93691	1	74251	+		8006	11369	5392	5431	10871	10871					0.09834267513542727
IVSALWEKW	9	Unmodified	_IVSALWEKW_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.312255859375	2	566.313492	1130.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.214	1	50.214	49.714	50.714	0								0	0	0	0.28724	1	10378	10378		1.6526	0.17072	1				8007	605	5393	5432	10872	10872					0.05234906374039383
IVSEYFVL	8	Unmodified	_IVSEYFVL_					0	0	0		CON__Q3KUS7	CON__Q3KUS7	CON__Q3KUS7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2664489746094	2	485.268219	968.521884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.014	1	65.014	64.514	65.514	0								0	0	0	0.38822	1	14889	14889		5.2307	0	1			+	8008	230	5394	5433	10873	10873					0.036364373257470106
IVWHFFHV	8	Unmodified	_IVWHFFHV_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.308349609375	2	542.789987	1083.56542	0.37089	0.00020131	-0.79228	-0.00043004	-0.42139	-0.00022873	543.2911785878429	101.44	0.56037	101.44	101.16	101.72	0					69	34	3	0	0	0	0.54081	1	25915	25915		0.79363	0.10326	1	109840			8009	5701	5395	5434	10874	10874					0.02698091613547149
IVYASVSSIC	10	Unmodified	_IVYASVSSIC_					0	0	0		ENSG00000100473|ENST00000396618|COCH;nc|ENSG00000100473|O43405-2|COCH;ENST00000553772.5_1_14:31344123-31349661:+|nuORF	ENSG00000100473|ENST00000396618|COCH	ENSG00000100473|ENST00000396618|COCH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2553100585938	2	521.267893	1040.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.141	1	45.229	44.729	45.729	0.08754								0	0	0	0.33022	1	8717	8717		11.64	0	1				8010	1202	5396	5435	10875	10875					0.002592746144046032
IVYFADSEV	9	Unmodified	_IVYFADSEV_					0	0	0		tr|U7T529|U7T529_FUSNUGfo/Idh/MocA-likeoxidoreductaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00285PE=4SV=1	tr|U7T529|U7T529_FUSNUGfo/Idh/MocA-likeoxidoreductaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00285PE=4SV=1	tr|U7T529|U7T529_FUSNUGfo/Idh/MocA-likeoxidoreductaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00285PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.8055419921875	2	521.758215	1041.50188	0.40206	0.00020978	3.1562	0.0016468	3.5582	0.0018565	521.7597211114596	96.557	0.38708	96.557	96.38	96.768	0					21	16	2	0	0	0	0.24263	1	24487	24487		12.532	1.4171	1	89278			8011	13723	5397	5436	10876	10876					-0.017213584048704433
IVYLKSTGL	9	Unmodified	_IVYLKSTGL_					0	0	0			REV__ENST00000464455.1_1_X:18942433-18943881:-|nuORF	REV__ENST00000464455.1_1_X:18942433-18943881:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7640380859375	2	497.302593	992.590633	0.49886	0.00024809	0.010832	5.3868E-06	0.50969	0.00025347	497.3025230533783	53.707	0.35583	53.707	53.575	53.931	0					16	12	3	0	0	0	0.24635	1	11438	11438		10.824	1.4765	1	58127	+		8012	8037	5398	5437	10877	10877					0.09404101625477779
IVYMVTLW	8	Unmodified	_IVYMVTLW_					0	0	0			REV__ENST00000447767.1_1_20:57099850-57100060:+|nuORF	REV__ENST00000447767.1_1_20:57099850-57100060:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2825317382812	2	512.780439	1023.54633	-0.27703	-0.00014206	0.51767	0.00026545	0.24064	0.00012339	512.7806373159564	20.853	0.087109	20.853	20.823	20.91	0					12	8	2	0	0	0	0.54097	1	1718	1718		0.69038	0	1	14885	+		8013	11911	5399	5438	10878	10878					0.035493742076482704
IWAALLML	8	Unmodified	_IWAALLML_					0	0	0			REV__ENSG00000181958|ENST00000641526|OR4A15	REV__ENSG00000181958|ENST00000641526|OR4A15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.77752685546875	2	465.777699	929.540846	0.16637	7.7492E-05	-0.44001	-0.00020495	-0.27364	-0.00012746	465.77743259428183	76.227	0.9752	76.266	76.047	77.022	0.039238					53	40	2	0	0	0	0.53257	1	18172	18172		6.3541	3.4649	1	949910	+		8014	10547	5400	5439	10879	10879					0.07325695415806877
IWAEVKKK	8	Unmodified	_IWAEVKKK_					0	0	0		nc|ENSG00000161973|Q96M95-2|CCDC42;ENSG00000161973|ENST00000293845|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.80767822265625	2	501.310752	1000.60695	0.35863	0.00017979	-0.22092	-0.00011075	0.13772	6.9039E-05	501.3092428659686	104.39	0.058334	104.43	104.4	104.46	0.034004					5	3	2	0	0	0	0.3576	1	26697	26697		2.5775	0	1	43988			8015	3806	5401	5440	10880	10880					0.10667227582234773
IWDETPLYF	9	Unmodified	_IWDETPLYF_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.2869262695312	2	592.28714	1182.55973	0.43454	0.00025738	-0.36086	-0.00021374	0.073681	4.364E-05	592.2867326601794	88.386	1.9295	88.386	88.004	89.933	0					191	71	5	0	0	0	4.1078E-06	3	22007	22007;22050;22142		154.46	122.16	1	4244500			8016	4826	5402	5441	10881;10882;10883	10881					-0.024250964794418906
IWDETPLYF	9	Unmodified	_IWDETPLYF_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.2867431640625	2	592.28714	1182.55973	0.38302	0.00022686	-0.43744	-0.00025909	-0.054417	-3.2231E-05	592.2866917947069	88.33	1.7399	88.36	88.052	89.792	0.030037					170	67	4	0	0	0	3.5265E-09	6	21840	21840;21887;21974;21982;22090;22138		170.55	136.45	1	4202500			8017	4826	5402	5441	10884;10885;10886;10887;10888;10889	10884					-0.024250964794418906
IWDLSITRL	9	Unmodified	_IWDLSITRL_					0	0	0		ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8243408203125	2	558.824224	1115.63389	0.56292	0.00031457	-0.32519	-0.00018173	0.23772	0.00013285	558.823947778159	75.039	0.76545	75.039	74.823	75.589	0					68	28	4	0	0	0	0.0044228	1	17929	17929		93.938	52.098	1	1748200			8018	6064	5403	5442	10890	10890					0.08070291402736984
IWDLSITRL	9	Unmodified	_IWDLSITRL_					0	0	0		ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.3001708984375	2	558.824224	1115.63389	0.55024	0.00030749	-0.2723	-0.00015217	0.27794	0.00015532	558.8239403532481	75.082	0.70174	75.126	74.867	75.569	0.044037					61	25	4	0	0	0	0.0037594	1	17795	17795		96.936	51.236	1	1269900			8019	6064	5403	5442	10891	10891					0.08070291402736984
IWEFPSATAW	10	Unmodified	_IWEFPSATAW_					0	0	0		ENST00000551007.1_1_12:113379873-113380056:+|nuORF	ENST00000551007.1_1_12:113379873-113380056:+|nuORF	ENST00000551007.1_1_12:113379873-113380056:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7681884765625	2	604.292756	1206.57096	0.70456	0.00042576	-0.90272	-0.00054551	-0.19816	-0.00011975	604.2920447017339	68.978	0.41529	68.978	68.775	69.191	0					24	15	2	0	0	0	0.31496	1	16091	16091		13.906	0	1	181680			8020	7099	5404	5443	10892	10892					-0.024062743852937274
IWFQAPVTF	9	Unmodified	_IWFQAPVTF_					0	0	0		ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2703857421875	2	554.794935	1107.57532	0.34844	0.00019331	-0.40932	-0.00022709	-0.060874	-3.3773E-05	554.7951349588949	90.866	1.2669	90.901	90.532	91.799	0.035446					95	47	3	0	0	0	0.19558	1	22638	22638		26.268	16.921	1	239970			8021	2269	5405	5444	10893	10893					0.025832348282619932
IWIVLFRW	8	Unmodified	_IWIVLFRW_					0	0	0			REV__ENST00000526903.1_1_11:71671811-71693962:+|nuORF	REV__ENST00000526903.1_1_11:71671811-71693962:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3157958984375	2	566.836937	1131.65932	0.35871	0.00020333	1.6467	0.00093339	2.0054	0.0011367	566.8377800583933	94.312	0.40208	94.312	94.084	94.486	0					29	18	2	0	0	0	0.3576	1	23842	23842		5.2307	3.1709	1	71910	+		8022	9278	5406	5445	10894	10894					0.09875810715834632
IWKCFQSL	8	Unmodified	_IWKCFQSL_					0	0	0			REV__ENST00000567859.5_1_16:20812516-20814833:-|nuORF	REV__ENST00000567859.5_1_16:20812516-20814833:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7686767578125	2	512.767863	1023.52117	0.27534	0.00014119	1.6582	0.00085029	1.9336	0.00099148	512.7686225929161	37.195	1.0005	37.195	36.611	37.612	0					59	23	4	0	0	0	0.46028	1	6487	6487		18.146	2.8979	1	164100	+		8023	10829	5407	5446	10895	10895					0.010353194050708225
IWKCFQSL	8	Unmodified	_IWKCFQSL_					0	0	0			REV__ENST00000567859.5_1_16:20812516-20814833:-|nuORF	REV__ENST00000567859.5_1_16:20812516-20814833:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2725830078125	2	512.767863	1023.52117	0.28401	0.00014563	1.8082	0.00092719	2.0922	0.0010728	512.7686305081194	37.076	0.84523	37.16	36.839	37.684	0.08448					48	19	4	0	0	0	0.48462	2	6263	6263;6319		14.838	2.243	1	152400	+		8024	10829	5407	5446	10896;10897	10896					0.010353194050708225
IWPAGNRS	8	Unmodified	_IWPAGNRS_					0	0	0		ENST00000569441.5_1_16:733170-733950:-|nuORF;ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000569441.5_1_16:733170-733950:-|nuORF	ENST00000569441.5_1_16:733170-733950:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.737060546875	2	450.737951	899.46135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.724	1	57.724	57.224	58.224	0								0	0	0	0.38822	1	12668	12668		5.2307	0.47466	1				8025	7187	5408	5447	10898	10898					0.007597647860507095
IWPLHWSL	8	Unmodified	_IWPLHWSL_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|26	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|26	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2822265625	2	526.28982	1050.56509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.546	1	63.546	63.046	64.046	0								0	0	0	0.3773	1	14441	14441		32.117	5.2333	1		+		8026	7810	5409	5448	10899	10899					0.04182671893704537
IWPLHWSL	8	Unmodified	_IWPLHWSL_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|26	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|26	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2817993164062	2	526.28982	1050.56509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.162	1	64.162	63.662	64.662	0								0	0	0	0.38081	1	14629	14629		26.341	9.399	1		+		8027	7810	5409	5448	10900	10900					0.04182671893704537
IWPPFQPPAW	10	Unmodified	_IWPPFQPPAW_					0	0	0		ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.821533203125	2	619.821484	1237.62842	0.16811	0.0001042	-0.508	-0.00031487	-0.33989	-0.00021067	619.8209703320534	93.035	0.66827	93.035	92.767	93.435	0					44	25	2	0	0	0	0.22666	4	23420	23420;23426;23476;23497		30.637	23.913	1	191890			8028	6982	5410	5449	10901;10902;10903;10904	10901					0.01910612610959106
IWPPFQPPAW	10	Unmodified	_IWPPFQPPAW_					0	0	0		ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8226928710938	2	619.821484	1237.62842	0.23194	0.00014376	-0.69657	-0.00043175	-0.46463	-0.00028799	619.8213733058126	92.973	0.69743	93.011	92.722	93.42	0.037369					73	28	4	0	0	0	0.40987	4	23238	23238;23287;23329;23343		10.824	8.3254	1	182030			8029	6982	5410	5449	10905;10906;10907;10908	10905					0.01910612610959106
IWRPNRVF	8	Unmodified	_IWRPNRVF_					0	0	0		ENST00000561781.1_1_16:675886-677619:+|nuORF;nc|ENSG00000197562|Q96S21-2|RAB40C;ENSG00000197562|ENST00000248139|RAB40C	ENST00000561781.1_1_16:675886-677619:+|nuORF	ENST00000561781.1_1_16:675886-677619:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.3134155273438	2	544.311618	1086.60868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.326	1	98.368	97.868	98.868	0.041931								0	0	0	0.38822	1	24884	24884		2.3027	0.65011	1				8030	5304	5411	5450	10909	10909					0.06884281390853175
IWSDAAALEL	10	Unmodified	_IWSDAAALEL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7940673828125	2	544.784764	1087.55498	0.64185	0.00034967	-1.896	-0.0010329	-1.2541	-0.00068321	544.7835174815931	79.718	0.3362	79.718	79.59	79.926	0					14	11	2	0	0	0	0.22118	1	19368	19368		31.268	7.2478	1	112650			8031	1073	5412	5451	10910	10910					0.014700193778026005
IWSLHDAHL	9	Unmodified	_IWSLHDAHL_					0	0	0		ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2860107421875	2	546.285266	1090.55598	0.21069	0.0001151	0.21999	0.00012018	0.43068	0.00023528	546.2855990935925	36.382	0.51344	36.382	36.208	36.721	0					37	19	3	0	0	0	0.23598	1	6201	6201		15.847	0	1	54997			8032	4870	5413	5452	10911	10911					0.014322785373678926
IWSLHDAHL	9	Unmodified	_IWSLHDAHL_					0	0	0		ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.285400390625	2	546.285266	1090.55598	0.23115	0.00012628	0.033571	1.8339E-05	0.26472	0.00014462	546.2854182641137	36.295	0.45528	36.377	36.235	36.691	0.081715					39	18	3	0	0	0	0.24635	1	6050	6050		10.824	1.4408	1	65914			8033	4870	5413	5452	10912	10912					0.014322785373678926
IWYDKYIHN	9	Unmodified	_IWYDKYIHN_					0	0	0			REV__tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	REV__tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.8201293945312	2	626.31148	1250.60841	0.2749	0.00017217	-1.4025	-0.00087839	-1.1276	-0.00070622	626.3105094350241	60.569	0.66014	60.569	60.119	60.779	0					34	23	2	0	0	0	0.25416	1	13570	13570		5.2307	1.6342	1	157000	+		8034	13206	5414	5453	10913	10913					-0.00687183119657675
IWYIFMDTF	9	Unmodified	_IWYIFMDTF_					0	0	0			REV__ENST00000531140.1_1_11:121174081-121177378:+|nuORF	REV__ENST00000531140.1_1_11:121174081-121177378:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.2483825683594	3	412.531699	1234.57327	0.76428	0.00031529	-0.60799	-0.00025082	0.15629	6.4473E-05	412.5313077767449	54.932	0.3794	54.932	54.706	55.085	0					20	13	2	0	0	0	0.25787	1	11840	11840		2.9952	0	1	75960	+		8035	8654	5415	5454	10914	10914					-0.03463561971852869
IYAALQRMLV	10	Unmodified	_IYAALQRMLV_					0	0	0		ENSG00000165449|ENST00000395348|SLC16A9	ENSG00000165449|ENST00000395348|SLC16A9	ENSG00000165449|ENST00000395348|SLC16A9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3433837890625	2	589.341726	1176.6689	0.74941	0.00044166	2.068	0.0012187	2.8174	0.0016604	589.844232741219	84.656	0.30151	84.679	84.649	84.95	0.023132					23	15	2	0	0	0	0.45239	1	20740	20740		4.3292	0	1	255270			8036	4085	5416	5455	10915	10915					0.08763210939059718
IYAALVVELFG	11	Unmodified	_IYAALVVELFG_					0	0	0		CACNA1I|p.G1637V|1|0.42|ENSG00000100346|chr22:39677396-39677396|G/T|missense_variant	CACNA1I|p.G1637V|1|0.42|ENSG00000100346|chr22:39677396-39677396|G/T|missense_variant	CACNA1I|p.G1637V|1|0.42|ENSG00000100346|chr22:39677396-39677396|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8557739257812	2	597.842082	1193.66961	0.43284	0.00025877	0.75299	0.00045017	1.1858	0.00070894	597.8414269969212	85.557	0.20416	85.557	85.482	85.686	0					14	10	2	0	0	0	0.31042	1	21169	21169		6.2058	0.47393	1	49669			8037	99	5417	5456	10916	10916					0.08052328859730551
IYADNQVMHF	10	Oxidation (M)	_IYADNQVM(Oxidation (M))HF_		IYADNQVM(1)HF		IYADNQVM(48)HF	0	0	1		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.284912109375	2	627.284605	1252.55466	-0.32888	-0.0002063	0.23953	0.00015025	-0.089348	-5.6047E-05	627.2847510444141	44.314	0.46432	44.314	44.09	44.554	0					32	15	3	0	0	0	0.086538	1	8591	8591		47.594	39.985	1	139940			8038	4689	5418	5457	10917	10917		277			-0.061517236137206055
IYADYIAPLF	10	Unmodified	_IYADYIAPLF_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3131103515625	2	593.313158	1184.61176	0.5327	0.00031605	-0.60853	-0.00036105	-0.075831	-4.4992E-05	593.3126447839072	92.303	1.0011	92.303	91.927	92.928	0					109	35	4	0	0	0	0.036485	2	23232	23185;23232		61.357	43.211	1	2383200			8039	940	5419	5458	10918;10919	10919					0.026840669343073387
IYADYIAPLF	10	Unmodified	_IYADYIAPLF_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7421264648438	2	593.313158	1184.61176	0.54294	0.00032213	-2.4779	-0.0014702	-1.9349	-0.001148	593.3123734108516	93.408	0.26516	93.408	93.241	93.506	0					16	10	2	0	0	0	0.31712	1	23534	23534		6.7232	1.4925	1	38046			8040	940	5419	5458	10920	10920					0.026840669343073387
IYADYIAPLF	10	Unmodified	_IYADYIAPLF_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3129272460938	2	593.313158	1184.61176	0.45193	0.00026814	-0.47541	-0.00028207	-0.023478	-1.393E-05	593.3126977826795	92.251	1.6266	92.288	91.859	93.486	0.03653					134	61	5	0	0	0	0.007929	3	23042	22999;23042;23090		78.149	57.696	1	1667400			8041	940	5419	5458	10921;10922;10923	10922					0.026840669343073387
IYAGVGEFSF	10	Unmodified	_IYAGVGEFSF_					0	0	0		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.26708984375	2	545.266207	1088.51786	0.84038	0.00045823	0.28376	0.00015472	1.1241	0.00061295	545.2665156186396	80.38	0.31442	80.38	80.228	80.543	0					23	10	3	0	0	0	0.29844	1	19622	19622		22.736	12.662	1	159370			8042	3642	5420	5459	10924	10924					-0.022856521679386788
IYAGVGEFSF	10	Unmodified	_IYAGVGEFSF_					0	0	0		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.266357421875	2	545.266207	1088.51786	0.68046	0.00037103	0.59325	0.00032348	1.2737	0.00069451	545.2664954543515	80.348	0.43349	80.372	80.219	80.652	0.023613					26	15	2	0	0	0	0.085977	1	19438	19438		47.749	30.636	1	139030			8043	3642	5420	5459	10925	10925					-0.022856521679386788
IYALWDYEP	9	Unmodified	_IYALWDYEP_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2799682617188	2	585.279315	1168.54408	0.092607	5.4201E-05	0.6378	0.00037329	0.7304	0.00042749	585.2796384428805	31.29	0.70831	31.29	30.889	31.597	0					50	33	2	0	0	0	0.33704	1	4678	4678		1.8442	0.19162	1	22513			8044	3167	5421	5460	10926	10926					-0.033453829964855686
IYALWDYEP	9	Unmodified	_IYALWDYEP_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2664794921875	2	585.279315	1168.54408	0.28044	0.00016413	0.65299	0.00038218	0.93343	0.00054632	585.2796401200407	31.131	0.84069	31.205	30.892	31.733	0.073782					63	41	2	0	0	0	0.33704	1	4554	4554		1.8442	0.19162	1	26623			8045	3167	5421	5460	10927	10927					-0.033453829964855686
IYALWDYEP	9	Unmodified	_IYALWDYEP_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2791748046875	2	585.279315	1168.54408	0.26691	0.00015622	2.3816	0.0013939	2.6485	0.0015501	585.2795909345699	29.82	0.46259	29.895	29.638	30.1	0.075403					64	27	3	0	0	0	0.25875	1	4080	4080		1.8442	0	1	29285			8046	3167	5421	5460	10928	10928					-0.033453829964855686
IYAPDNEQFI	10	Unmodified	_IYAPDNEQFI_					0	0	0			REV__ENST00000437111.1_1_10:52389508-52390123:-|nuORF	REV__ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2997436523438	2	605.292953	1208.57135	0.74312	0.00044981	-4.0375	-0.0024439	-3.2944	-0.0019941	605.289873378415	78.461	2.1747	78.491	78.051	80.226	0.030159					151	76	3	0	0	0	0.45239	1	18977	18977		4.3292	0.38484	1	2420100	+		8047	9503	5422	5461	10929	10929					-0.02458899456087238
IYAPKLQEF	9	Unmodified	_IYAPKLQEF_					0	0	0		ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3067016601562	2	554.8055	1107.59645	0.33726	0.00018711	-0.12872	-7.1413E-05	0.20854	0.0001157	554.8054416275609	56.809	0.39558	56.809	56.65	57.046	0					25	14	2	0	0	0	0.18759	1	12390	12390		27.629	2.6378	1	207920			8048	4623	5423	5462	10930	10930					0.04695200137143729
IYAPKLQEF	9	Unmodified	_IYAPKLQEF_					0	0	0		ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8060913085938	2	554.8055	1107.59645	0.55209	0.0003063	-0.22117	-0.00012271	0.33092	0.0001836	554.8054106825175	56.742	0.46093	56.809	56.657	57.118	0.066452					29	16	3	0	0	0	0.12214	1	12246	12246		27.629	2.6378	1	171280			8049	4623	5423	5462	10931	10931					0.04695200137143729
IYARLFDWL	9	Unmodified	_IYARLFDWL_					0	0	0		nc|ENSG00000278259|Q96H55-3|MYO19;nc|ENSG00000278259|Q96H55-4|MYO19;MYO19|p.K923Vfs*12|1|0.2|ENSG00000278259|chr17:36496396-36496397|TT/-|frameshift_variant;ENSG00000278259|ENST00000614623|MYO19	nc|ENSG00000278259|Q96H55-3|MYO19	nc|ENSG00000278259|Q96H55-3|MYO19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.844970703125	2	598.826766	1195.63898	0.62526	0.00037442	-1.1944	-0.00071525	-0.56916	-0.00034083	598.8267302815433	85.234	0.48386	85.257	85.063	85.547	0.023125					35	20	3	0	0	0	0.12214	1	20877	20877		27.629	4.4804	1	354670			8050	5759	5424	5463	10932	10932					0.04898595265376571
IYATEAHVF	9	Unmodified	_IYATEAHVF_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7665405273438	2	525.766374	1049.5182	0.15774	8.2935E-05	-0.10504	-5.5225E-05	0.052706	2.7711E-05	525.7664981742158	49.343	0.62478	49.343	49.169	49.794	0					31	21	2	0	0	0	0.021119	1	10120	10120		57.471	27.247	1	95145			8051	631	5425	5464	10933	10933					-0.004582324481134492
IYATEAHVF	9	Unmodified	_IYATEAHVF_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7666625976562	2	525.766374	1049.5182	0.015883	8.3506E-06	-0.14987	-7.8794E-05	-0.13398	-7.0444E-05	525.766381089828	49.265	0.38284	49.341	49.185	49.568	0.076607					22	13	2	0	0	0	0.073832	1	9964	9964		38.151	20.016	1	87816			8052	631	5425	5464	10934	10934					-0.004582324481134492
IYATIMDFF	9	Unmodified	_IYATIMDFF_					0	0	0		nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7728271484375	2	560.772811	1119.53107	0.4603	0.00025812	0.3082	0.00017283	0.76849	0.00043095	560.772928178136	100.56	0.61093	100.56	100.34	100.95	0					73	36	3	0	0	0	0.0099477	4	25739	25695;25739;25779;25790		67.344	33.241	1	259820			8053	4345	5426	5465	10935;10936;10937;10938	10936					-0.023915373802083195
IYATIMDFF	9	Unmodified	_IYATIMDFF_					0	0	0		nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7731323242188	2	560.772811	1119.53107	0.59004	0.00033088	0.18644	0.00010455	0.77648	0.00043543	560.7728440269937	100.53	0.54701	100.57	100.38	100.92	0.042831					67	32	3	0	0	0	0.0099477	3	25559	25516;25559;25607		67.344	33.241	1	162870			8054	4345	5426	5465	10939;10940;10941	10940					-0.023915373802083195
IYCFVSHLMT	10	Unmodified	_IYCFVSHLMT_					0	0	0		L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|24|3|anti-sense	L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|24|3|anti-sense	L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|24|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.2909545898438	2	607.290845	1212.56714	0.85259	0.00051777	-0.29983	-0.00018208	0.55276	0.00033569	607.2905044626095	92.916	0.47519	92.916	92.682	93.157	0					49	17	5	0	0	0	0.29345	1	23370	23370		24.021	2.2739	1	548410			8055	7387	5427	5466	10942	10942					-0.0306440347503667
IYCFVSHLMT	10	Unmodified	_IYCFVSHLMT_					0	0	0		L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|24|3|anti-sense	L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|24|3|anti-sense	L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|24|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2911987304688	2	607.290845	1212.56714	0.91892	0.00055805	-0.32127	-0.00019511	0.59765	0.00036295	607.2904779039234	92.783	0.51644	92.821	92.643	93.16	0.037369					44	19	3	0	0	0	0.17902	1	23252	23252		36.127	9.8589	1	506210			8056	7387	5427	5466	10943	10943					-0.0306440347503667
IYCTSNDDQVG	11	Unmodified	_IYCTSNDDQVG_					0	0	0		ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.756591796875	2	607.753335	1213.49212	0.7026	0.00042701	3.8198	0.0023215	4.5224	0.0027485	607.755639911041	78.637	0.40105	78.667	78.451	78.852	0.030159					20	13	2	0	0	0	0.39378	1	18894	18894		5.7319	0.97584	1	217160			8057	5441	5428	5467	10944	10944					-0.10608914472572906
IYCYTDPEL	9	Unmodified	_IYCYTDPEL_					0	0	0			REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2911987304688	2	558.749533	1115.48451	0.63663	0.00035572	1.5808	0.00088327	2.2174	0.001239	558.7489924936664	64.439	0.74726	64.439	63.972	64.719	0					42	25	3	0	0	0	0.24263	1	14745	14745		12.532	0	1	84258	+		8058	9516	5429	5468	10945	10945					-0.06861022002181016
IYDFDRFME	9	Unmodified	_IYDFDRFME_					0	0	0			REV__nc|ENSG00000065243|Q16513-5|PKN2	REV__nc|ENSG00000065243|Q16513-5|PKN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.5184020996094	3	412.51823	1234.53286	0.68749	0.0002836	-0.037584	-1.5504E-05	0.6499	0.0002681	412.5182123048138	93.708	0.40092	93.708	93.527	93.928	0					32	15	3	0	0	0	0.20162	1	23640	23640		18.373	3.4159	1	482720	+		8059	8098	5430	5469	10946	10946					-0.07502528362238081
IYDFDRFME	9	Unmodified	_IYDFDRFME_					0	0	0			REV__nc|ENSG00000065243|Q16513-5|PKN2	REV__nc|ENSG00000065243|Q16513-5|PKN2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	412.51823	1234.53286	0.24449	0.00010086	0.45633	0.00018825	0.70083	0.0002891	412.5184339761907	93.72	0.41603	93.757	93.534	93.95	0.037369	0.024762	0.00034847	NaN	18.373	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271390	+		8060	8098	5430	5469							-0.07502528362238081
IYDFIGEFM	9	Unmodified	_IYDFIGEFM_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.76220703125	2	567.762443	1133.51033	0.33954	0.00019278	-0.3539	-0.00020093	-0.014356	-8.1509E-06	567.7623526650304	96.554	0.38708	96.554	96.38	96.768	0					21	16	2	0	0	0	0.19398	2	24494	24494;24510		19.257	6.0679	1	79676			8061	1483	5431	5470	10947;10948	10947					-0.05108127759876879
IYDFIGEFM	9	Unmodified	_IYDFIGEFM_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7619018554688	2	567.762443	1133.51033	0.37283	0.00021168	-0.64891	-0.00036842	-0.27608	-0.00015675	567.7621210633492	96.486	0.30308	96.525	96.422	96.726	0.039772					21	15	2	0	0	0	0.14091	1	24335	24335		25.399	15.325	1	79717			8062	1483	5431	5470	10949	10949					-0.05108127759876879
IYDGKRHLIF	10	Unmodified	_IYDGKRHLIF_					0	0	0		ENSG00000120289|ENST00000378982|MAGEB4	ENSG00000120289|ENST00000378982|MAGEB4	ENSG00000120289|ENST00000378982|MAGEB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5630187988281	3	421.239907	1260.69789	0.39353	0.00016577	3.2961	0.0013885	3.6896	0.0015542	421.57612739713903	65.997	0.086662	66.064	66.025	66.112	0.066872					4	2	2	0	0	0	0.43672	1	15051	15051		3.8763	0.28927	1	39242			8063	2115	5432	5471	10950	10950					0.0779707155968481
IYDIVRNSW	9	Unmodified	_IYDIVRNSW_					0	0	0		nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	nc|ENSG00000128585|Q9UL63-2|MKLN1	nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8400268554688	2	583.303655	1164.59276	0.44578	0.00026002	3.129	0.0018251	3.5748	0.0020852	583.8074395428313	59.616	0.5257	59.616	59.43	59.956	0					45	20	3	0	0	0	0.19558	1	13256	13256		26.268	13.226	1	150280			8064	2401	5433	5472	10951	10951					0.01704530363304002
IYDIVRNSW	9	Unmodified	_IYDIVRNSW_					0	0	0		nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	nc|ENSG00000128585|Q9UL63-2|MKLN1	nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.8401489257812	2	583.303655	1164.59276	0.46798	0.00027298	2.8821	0.0016811	3.3501	0.0019541	583.8077008407791	59.554	0.58962	59.626	59.427	60.016	0.072342					32	22	2	0	0	0	0.20972	1	13082	13082		18.373	8.2992	1	165650			8065	2401	5433	5472	10952	10952					0.01704530363304002
IYDKFIAQL	9	Unmodified	_IYDKFIAQL_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8135375976562	2	555.813325	1109.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.806	1	64.806	64.306	65.306	0								0	0	0	1.665E-08	1	14826	14826		114.19	56.464	1				8066	3777	5434	5473	10953	10953					0.061674866541807205
IYDKFIAQL	9	Unmodified	_IYDKFIAQL_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8120727539062	2	555.813325	1109.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.56	1	65.56	65.06	66.06	0								0	0	0	0.20678	1	15056	15056		17.113	4.0704	1				8067	3777	5434	5473	10954	10954					0.061674866541807205
IYDKFIAQL	9	Unmodified	_IYDKFIAQL_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8135375976562	2	555.813325	1109.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.731	1	64.8	64.3	65.3	0.068916								0	0	0	5.6132E-05	1	14657	14657		93.938	46.189	1				8068	3777	5434	5473	10955	10955					0.061674866541807205
IYDKVQEWT	9	Unmodified	_IYDKVQEWT_					0	0	0			REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4	REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.2962646484375	2	591.295496	1180.57644	0.3319	0.00019625	1.1847	0.0007005	1.5166	0.00089675	591.2961620843282	102.45	0.45059	102.45	102.3	102.75	0					65	32	3	0	0	0	0.17428	1	26278	26278		21.537	2.28	1	337060	+		8069	12770	5435	5474	10956	10956					-0.006625955934623562
IYDKVQEWT	9	Unmodified	_IYDKVQEWT_					0	0	0			REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4	REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.2783203125	2	591.295496	1180.57644	0.50833	0.00030057	1.1378	0.00067275	1.6461	0.00097332	591.2960637983253	102.42	0.44937	102.46	102.26	102.71	0.040916					67	33	3	0	0	0	0.17428	2	26111	26111;26138		21.537	3.3906	1	226880	+		8070	12770	5435	5474	10957;10958	10957					-0.006625955934623562
IYDKVQEWT	9	Unmodified	_IYDKVQEWT_					0	0	0			REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4	REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.29638671875	2	591.295496	1180.57644	0.50833	0.00030057	1.1378	0.00067275	1.6461	0.00097332	591.2960637983253	102.42	0.44937	102.46	102.26	102.71	0.040916					67	33	3	0	0	0	0.24791	1	26101	26101		10.074	2.7847	1	226880	+		8071	12770	5435	5474	10959	10959					-0.006625955934623562
IYDKVQEWT	9	Unmodified	_IYDKVQEWT_					0	0	0			REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4	REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	591.295496	1180.57644	0.3319	0.00019625	1.1847	0.0007005	1.5166	0.00089675	591.2961620843282	102.45	0.45059	102.45	102.3	102.75	0	-0.0074351	3.1051E-05	NaN	21.537	65	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337060	+		8072	12770	5435	5474							-0.006625955934623562
IYDPLRPV	8	Unmodified	_IYDPLRPV_					0	0	0			REV__ENST00000592626.3_1_19:652824-663133:-|nuORF	REV__ENST00000592626.3_1_19:652824-663133:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.24664306640625	2	486.779285	971.544017	0.33891	0.00016498	-0.028432	-1.384E-05	0.31048	0.00015114	486.77916887538214	70.285	0.44081	70.285	70.114	70.555	0					28	16	2	0	0	0	0.33807	1	16475	16475		28.487	6.7402	1	269570	+		8073	8149	5436	5475	10960	10960					0.057106617941940385
IYDPLRPV	8	Unmodified	_IYDPLRPV_					0	0	0			REV__ENST00000592626.3_1_19:652824-663133:-|nuORF	REV__ENST00000592626.3_1_19:652824-663133:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.77880859375	2	486.779285	971.544017	0.27455	0.00013365	-0.23172	-0.0001128	0.042832	2.085E-05	486.7791311472624	70.166	0.41238	70.227	70.065	70.477	0.060562					28	16	2	0	0	0	0.37883	1	16335	16335		28.487	3.813	1	228820	+		8074	8149	5436	5475	10961	10961					0.057106617941940385
IYDPLRPV	8	Unmodified	_IYDPLRPV_					0	0	0			REV__ENST00000592626.3_1_19:652824-663133:-|nuORF	REV__ENST00000592626.3_1_19:652824-663133:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2469787597656	2	486.779285	971.544017	0.27455	0.00013365	-0.23172	-0.0001128	0.042832	2.085E-05	486.7791311472624	70.166	0.41238	70.227	70.065	70.477	0.060562					28	16	2	0	0	0	0.33807	1	16287	16287		28.487	3.813	1	228820	+		8075	8149	5436	5475	10962	10962					0.057106617941940385
IYDPVPSQL	9	Unmodified	_IYDPVPSQL_					0	0	0			REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.273681640625	2	516.274032	1030.53351	0.66056	0.00034103	0.017778	9.1784E-06	0.67833	0.00035021	516.2739454139297	66.421	0.73564	66.488	66.166	66.901	0.066872					52	28	3	0	0	0	0.22344	1	15271	15271		15.847	3.3156	1	410820	+		8076	8429	5437	5476	10963	10963					0.01946634349087617
IYDPVPSQL	9	Unmodified	_IYDPVPSQL_					0	0	0			REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2744140625	2	516.274032	1030.53351	0.66056	0.00034103	0.017778	9.1784E-06	0.67833	0.00035021	516.2739454139297	66.421	0.73564	66.488	66.166	66.901	0.066872					52	28	3	0	0	0	0.20845	1	15161	15161		21.747	0	1	410820	+		8077	8429	5437	5476	10964	10964					0.01946634349087617
IYDRFGRLM	9	Unmodified	_IYDRFGRLM_					0	0	0		nc|ENSG00000278845|Q9BRJ2|MRPL45;ENSG00000278845|ENST00000613675|MRPL45	nc|ENSG00000278845|Q9BRJ2|MRPL45	nc|ENSG00000278845|Q9BRJ2|MRPL45	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.7770385742188	2	585.808051	1169.60155	0.73719	0.00043185	3.0061	0.001761	3.7433	0.0021928	585.8099132769638	69.469	0.3569	69.469	69.347	69.704	0					25	11	3	0	0	0	0.24366	1	16283	16283		13.042	2.243	1	201000			8078	5765	5438	5477	10965	10965					0.023531807281187866
IYDRFGRLM	9	Unmodified	_IYDRFGRLM_					0	0	0		nc|ENSG00000278845|Q9BRJ2|MRPL45;ENSG00000278845|ENST00000613675|MRPL45	nc|ENSG00000278845|Q9BRJ2|MRPL45	nc|ENSG00000278845|Q9BRJ2|MRPL45	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.7771606445312	2	585.808051	1169.60155	0.62	0.0003632	3.7173	0.0021776	4.3373	0.0025408	585.8102176148035	69.368	0.57811	69.43	69.279	69.857	0.062119					29	20	3	0	0	0	0.24791	1	16097	16097		10.074	0.6908	1	359560			8079	5765	5438	5477	10966	10966					0.023531807281187866
IYDRVTRV	8	Unmodified	_IYDRVTRV_					0	0	0			REV__nc|ENSG00000127329|P23467-4|PTPRB	REV__nc|ENSG00000127329|P23467-4|PTPRB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.29241943359375	2	511.293091	1020.57163	-0.53404	-0.00027305	-0.60271	-0.00030816	-1.1368	-0.00058121	511.29280045342705	41.469	1.14	41.469	41.225	42.365	0					130	40	5	0	0	0	0.51415	1	7798	7798		10.824	1.4408	1	611060	+		8080	8995	5439	5478	10967	10967					0.06216565054421608
IYDSVKVYF	9	Unmodified	_IYDSVKVYF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2799072265625	2	567.297507	1132.58046	0.3342	0.00018959	-1.3034	-0.00073941	-0.9692	-0.00054982	567.2965799825032	62.466	0.59793	62.466	62.285	62.883	0					70	21	4	0	0	0	0.0097877	3	14166	14117;14166;14213		67.838	27.881	1	3262500			8081	821	5440	5479	10968;10969;10970	10969					0.019474939002293468
IYDSVKVYF	9	Unmodified	_IYDSVKVYF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.27978515625	2	567.297507	1132.58046	0.30852	0.00017503	-1.0715	-0.00060783	-0.76293	-0.00043281	567.2967449318653	62.362	0.57307	62.435	62.284	62.857	0.072701					62	19	4	0	0	0	0.0068798	4	13957	13912;13957;14003;14049		76.825	32.966	1	2676500			8082	821	5440	5479	10971;10972;10973;10974	10972					0.019474939002293468
IYDVYRYL	8	Unmodified	_IYDVYRYL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2386474609375	2	552.78985	1103.56515	0.71798	0.00039689	-0.69235	-0.00038272	0.025636	1.4171E-05	552.7890600762512	65.827	0.26616	65.893	65.788	66.055	0.066872					12	9	2	0	0	0	0.35069	1	15012	15012		20.454	3.5113	1	104320			8083	3066	5441	5480	10975	10975					0.01750627103047009
IYDYAIVLF	9	Unmodified	_IYDYAIVLF_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8026733398438	2	558.802426	1115.5903	0.47289	0.00026425	0.066043	3.6905E-05	0.53894	0.00030116	558.8022148093162	96.391	0.60715	96.391	96.16	96.768	0					67	27	3	0	0	0	0.083504	2	24492	24444;24492		36.044	17.909	1	723690			8084	1063	5442	5481	10976;10977	10977					0.03712681905608406
IYDYAIVLF	9	Unmodified	_IYDYAIVLF_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8025512695312	2	558.802426	1115.5903	0.56864	0.00031776	-0.065175	-3.642E-05	0.50347	0.00028134	558.8022197041244	96.392	0.67918	96.432	96.161	96.841	0.039772					88	36	3	0	0	0	0.083504	2	24275	24275;24315		36.044	17.909	1	866960			8085	1063	5442	5481	10978;10979	10978					0.03712681905608406
IYEAEARDF	9	Unmodified	_IYEAEARDF_					0	0	0			REV__ENSG00000120370|ENST00000367763|GORAB	REV__ENSG00000120370|ENST00000367763|GORAB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7821655273438	2	557.264196	1112.51384	0.96537	0.00053797	3.5912	0.0020012	4.5565	0.0025392	557.767472437475	67.29	0.14424	67.355	67.264	67.408	0.065071					6	4	2	0	0	0	0.2298	1	15404	15404		16.942	2.3606	1	75974	+		8086	8874	5443	5482	10980	10980					-0.03791741661666492
IYEDAVFPEE	10	Unmodified	_IYEDAVFPEE_					0	0	0			REV__ENST00000555749.5_1_14:57710864-57735366:-|nuORF	REV__ENST00000555749.5_1_14:57710864-57735366:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8110961914062	2	606.276969	1210.53938	0.87217	0.00052877	-2.8761	-0.0017437	-2.0039	-0.0012149	606.2736770730826	93.117	0.34219	93.117	92.956	93.298	0					33	12	4	0	0	0	0.43972	1	23498	23498		6.7232	0.51738	1	138810	+		8087	8147	5444	5483	10981	10981					-0.05746311929897274
IYEDAVFPEE	10	Unmodified	_IYEDAVFPEE_					0	0	0			REV__ENST00000555749.5_1_14:57710864-57735366:-|nuORF	REV__ENST00000555749.5_1_14:57710864-57735366:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	606.276969	1210.53938	0.93066	0.00056424	-5.1568	-0.0031264	-4.2261	-0.0025622	606.2739299288808	93.108	0.42161	93.146	92.891	93.313	0.037369	0.014662	-0.00060232	NaN	6.7232	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73120	+		8088	8147	5444	5483							-0.05746311929897274
IYEEFLAAF	9	Unmodified	_IYEEFLAAF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000491827.1_1_3:142733158-142735829:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.776611328125	2	551.776408	1101.53826	0.41058	0.00022655	0.70376	0.00038832	1.1143	0.00061486	551.7767262067217	90.674	0.74359	90.674	90.439	91.183	0					63	26	3	0	0	0	0.0046476	2	22711	22711;22757		85.357	62.62	1	639430			8089	3938	5445	5484	10982;10983	10982					-0.008444815081702473
IYEEFLAAF	9	Unmodified	_IYEEFLAAF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000491827.1_1_3:142733158-142735829:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7769165039062	2	551.776408	1101.53826	0.17968	9.9142E-05	0.95313	0.00052592	1.1328	0.00062506	551.7767860568794	90.671	0.81534	90.707	90.354	91.169	0.035446					71	31	3	0	0	0	0.0099477	2	22542	22542;22595		67.344	46.473	1	642100			8090	3938	5445	5484	10984;10985	10984					-0.008444815081702473
IYEESAKNEE	10	Unmodified	_IYEESAKNEE_					0	0	0			REV__ENSG00000163961|ENST00000318037|RNF168	REV__ENSG00000163961|ENST00000318037|RNF168	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2896728515625	2	606.274958	1210.53536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.578	1	93.616	93.116	94.116	0.037369								0	0	0	0.3327	1	23433	23433		8.7454	0	1		+		8091	9969	5446	5485	10986	10986					-0.061484014236157236
IYEETSGMLLF	11	Unmodified	_IYEETSGMLLF_					0	0	0		ENSG00000140093|ENST00000261994|SERPINA10	ENSG00000140093|ENST00000261994|SERPINA10	ENSG00000140093|ENST00000261994|SERPINA10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.88104248046875	3	434.881057	1301.62134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.083	1	52.15	51.65	52.65	0.067173								0	0	0	0.32216	1	10811	10811		7.0371	0	1				8092	2998	5447	5486	10987	10987					-0.01740532842450193
IYEEWVNSI	9	Unmodified	_IYEEWVNSI_					0	0	0			REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3347778320312	2	576.782222	1151.54989	0.1732	9.9897E-05	-2.2117	-0.0012757	-2.0385	-0.0011758	576.7805139926764	48.748	0.34729	48.824	48.633	48.981	0.076607					18	11	2	0	0	0	0.23598	1	9797	9797		15.847	2.8047	1	106770	+		8093	10814	5448	5487	10988	10988					-0.019822844848022214
IYEFHVSV	8	Unmodified	_IYEFHVSV_					0	0	0		ENST00000398421.6_1_7:74188378-74193456:+|nuORF	ENST00000398421.6_1_7:74188378-74193456:+|nuORF	ENST00000398421.6_1_7:74188378-74193456:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.25469970703125	2	497.255643	992.496732	-0.17831	-8.8665E-05	-3.0594	-0.0015213	-3.2377	-0.00161	497.2542512773556	40.978	0.41143	41.068	40.854	41.265	0.089645					25	15	2	0	0	0	0.52924	1	7459	7459		8.5933	2.8614	1	51953			8094	6352	5449	5488	10989	10989					0.00018382523194304667
IYEKQLQKYY	10	Unmodified	_IYEKQLQKYY_					0	0	0			REV__nc|ENSG00000159459|Q8IWV7-2|UBR1	REV__nc|ENSG00000159459|Q8IWV7-2|UBR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.7161560058594	3	459.246727	1374.71835	-0.31843	-0.00014624	-1.0379	-0.00047664	-1.3563	-0.00062288	459.2461456812631	41.115	0.35657	41.115	40.967	41.324	0					15	12	2	0	0	0	0.31794	1	7652	7652		4.1895	1.1943	1	25683	+		8095	9829	5450	5489	10990	10990					0.04598197428867934
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3005981445312	2	595.30005	1188.58555	0.46175	0.00027488	0.28611	0.00017032	0.74786	0.0004452	595.3005337081897	98.71	1.2921	98.71	98.312	99.604	0					326	79	5	0	0	0	0.0005281	10	25097	25057;25097;25133;25171;25212;25249;25290;25332;25375;25415		131.27	98.482	1	22982000			8096	998	5451	5490	10991;10992;10993;10994;10995;10996;10997;10998;10999;11000	10992					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.29931640625	2	595.30005	1188.58555	0.17028	0.00010137	0.66955	0.00039858	0.83983	0.00049995	595.3002442773122	102.82	0.97099	102.82	102.45	103.42	0					177	64	4	0	0	0	0.24767	1	26547	26547		13.042	2.9685	1	1040600			8097	998	5451	5490	11001	11001					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3004150390625	2	595.30005	1188.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.992	1	99.992	99.492	100.49	0								0	0	0	0.14533	1	25543	25543		26.268	11.43	1				8098	998	5451	5490	11002	11002					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2996215820312	2	595.30005	1188.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.18	1	100.18	99.678	100.68	0								0	0	0	0.10158	1	25600	25600		32.786	12.332	1				8099	998	5451	5490	11003	11003					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2996215820312	2	595.30005	1188.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.28	1	100.28	99.782	100.78	0								0	0	0	0.053425	1	25632	25632		47.749	27.295	1				8100	998	5451	5490	11004	11004					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2998046875	2	595.30005	1188.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.31	1	102.31	101.81	102.81	0								0	0	0	0.16041	1	26250	26250		24.021	11.78	1				8101	998	5451	5490	11005	11005					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3775634765625	2	595.30005	1188.58555	0.070431	4.1928E-05	-0.4921	-0.00029295	-0.42167	-0.00025102	595.2998603802588	104.22	0.44206	104.22	103.98	104.42	0					60	42	3	0	0	0	0.24791	1	26774	26774		10.074	4.3421	1	69936			8102	998	5451	5490	11006	11006					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2990112304688	2	595.30005	1188.58555	0.43545	0.00025922	-0.13497	-8.0347E-05	0.30048	0.00017888	595.2995933553568	97.631	0.70653	97.672	97.208	97.915	0.040855					58	35	2	0	0	0	0.11547	2	24674	24674;24713		29.082	16.55	1	96085			8103	998	5451	5490	11007;11008	11007					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3003540039062	2	595.30005	1188.58555	0.40444	0.00024076	0.41779	0.00024871	0.82223	0.00048947	595.300038128991	98.404	0.19234	98.446	98.27	98.462	0.041931					21	9	4	0	0	0	0.02293	1	24902	24902		56.177	38.042	1	465050			8104	998	5451	5490	11009	11009					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3004150390625	2	595.30005	1188.58555	0.34922	0.00020789	0.24986	0.00014874	0.59908	0.00035664	595.2998561848095	99.82	1.2953	99.863	99.791	101.09	0.042839					155	77	3	0	0	0	0.065576	8	25342	25342;25387;25425;25460;25511;25560;25600;25605		39.95	27.418	1	312460			8105	998	5451	5490	11010;11011;11012;11013;11014;11015;11016;11017	11010					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3008422851562	2	595.30005	1188.58555	0.31609	0.00018817	0.25133	0.00014962	0.56742	0.00033779	595.2998607018333	101.1	0.72228	101.14	101.09	101.81	0.042839					76	47	3	0	0	0	0.16392	2	25770	25770;25794		22.736	14.826	1	105740			8106	998	5451	5490	11018;11019	11018					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2999877929688	2	595.30005	1188.58555	0.26502	0.00015777	0.67088	0.00039938	0.9359	0.00055714	595.3002322017054	102.76	0.9104	102.8	102.33	103.24	0.040916					192	71	4	0	0	0	0.16392	2	26164	26140;26164		22.736	14.826	1	811540			8107	998	5451	5490	11020;11021	11021					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3007202148438	2	595.30005	1188.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.525	1	98.567	98.067	99.067	0.041931								0	0	0	7.5977E-27	1	24944	24944		172.91	103.8	1				8108	998	5451	5490	11022	11022					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3012084960938	2	595.30005	1188.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.645	1	98.687	98.187	99.187	0.041931								0	0	0	1.2945000000000001E-19	1	24981	24981		158.2	92.968	1				8109	998	5451	5490	11023	11023					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.8447875976562	2	595.30005	1188.58555	0.30066	0.00017898	0.02675	1.5925E-05	0.32741	0.00019491	595.299748498682	102.05	0.84189	102.09	101.49	102.33	0.042656					111	69	2	0	0	0	0.23478	1	25974	25974		17.113	7.039	1	68101			8110	998	5451	5490	11024	11024					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	595.30005	1188.58555	0.39981	0.00023801	1.2193	0.00072588	1.6192	0.00096388	595.3005249252093	99.688	0.13894	99.688	99.604	99.743	0	-0.087808	0.0011082	NaN	39.95	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307810			8111	998	5451	5490							-0.0012020223716717737
IYERLFCWI	9	Unmodified	_IYERLFCWI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8211669921875	2	621.820627	1241.6267	0.37691	0.00023437	-3.2613	-0.0020279	-2.8844	-0.0017936	621.8202445389093	84.782	0.72506	84.782	84.614	85.339	0					35	28	2	0	0	0	0.22861	1	20955	20955		15.248	8.5253	1	169960			8112	4670	5452	5491	11025	11025					0.015552355306908794
IYERLFCWI	9	Unmodified	_IYERLFCWI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8204345703125	2	621.820627	1241.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.145	1	85.145	84.645	85.645	0								0	0	0	0.25573	1	21028	21028		8.1555	1.4324	1				8113	4670	5452	5491	11026	11026					0.015552355306908794
IYERLFCWI	9	Unmodified	_IYERLFCWI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8372802734375	2	621.820627	1241.6267	0.35851	0.00022293	-3.7019	-0.0023019	-3.3434	-0.002079	622.3186804673747	84.815	0.29346	84.838	84.742	85.035	0.023125					19	12	2	0	0	0	0.2125	1	20757	20757		17.113	10.39	1	280820			8114	4670	5452	5491	11027	11027					0.015552355306908794
IYESDRDGA	9	Unmodified	_IYESDRDGA_					0	0	0		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.760498046875	2	513.230353	1024.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.887	1	98.887	98.387	99.387	0								0	0	0	0.27613	1	25208	25208		3.9444	1.0552	1				8115	4998	5453	5492	11028	11028					-0.06509191592465413
IYESLKKYL	9	Unmodified	_IYESLKKYL_					0	0	0		ENSG00000171612|ENST00000302692|SLC25A33	ENSG00000171612|ENST00000302692|SLC25A33	ENSG00000171612|ENST00000302692|SLC25A33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.8339233398438	2	578.834257	1155.65396	-0.055061	-3.1871E-05	0.020083	1.1624E-05	-0.034978	-2.0247E-05	578.8342160025176	43.731	0.46125	43.731	43.544	44.006	0					30	16	3	0	0	0	0.24767	1	8426	8426		13.042	0.80181	1	89755			8116	4452	5454	5493	11029	11029					0.08236042342718974
IYESVSPLT	9	Unmodified	_IYESVSPLT_					0	0	0			REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|19	REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7843322753906	2	504.76604	1007.51753	0.35183	0.00017759	0.50038	0.00025258	0.85221	0.00043017	504.76630189528044	74.72	0.45791	74.72	74.477	74.935	0					35	16	3	0	0	0	0.16036	1	17906	17906		23.148	6.2061	1	137180	+		8117	7802	5455	5494	11030	11030					0.014069281122033317
IYESVSPLT	9	Unmodified	_IYESVSPLT_					0	0	0			REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|19	REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.78411865234375	2	504.76604	1007.51753	0.33948	0.00017136	0.2766	0.00013962	0.61607	0.00031097	504.7662062865511	74.676	0.52104	74.725	74.45	74.972	0.048546					25	18	2	0	0	0	0.16036	1	17728	17728		23.148	6.2061	1	160820	+		8118	7802	5455	5494	11031	11031					0.014069281122033317
IYFCIPVCFV	10	Unmodified	_IYFCIPVCFV_					0	0	0		ENST00000273038.7_1_3:11598803-11598956:-|nuORF	ENST00000273038.7_1_3:11598803-11598956:-|nuORF	ENST00000273038.7_1_3:11598803-11598956:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3136596679688	2	602.300681	1202.58681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.637	1	77.637	77.137	78.137	0								0	0	0	0.32946	1	18743	18743		12.532	5.8084	1				8119	5918	5456	5495	11032	11032					-0.006380274642651784
IYFDGDFGHF	10	Unmodified	_IYFDGDFGHF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.3034057617188	2	609.266739	1216.51892	0.061565	3.7509E-05	0.54441	0.00033169	0.60597	0.0003692	609.2669022481915	72.203	0.56311	72.203	72.042	72.605	0					47	18	3	0	0	0	0.14009	1	17084	17084		58.679	58.679	1	472130			8120	7556	5457	5496	11033	11033					-0.08067437799059007
IYFDGDFGHF	10	Unmodified	_IYFDGDFGHF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3025512695312	2	609.266739	1216.51892	0.32452	0.00019772	0.23004	0.00014016	0.55456	0.00033788	609.2668589508165	72.129	0.53403	72.185	72.004	72.538	0.055931					48	18	3	0	0	0	0.14009	1	16905	16905		58.679	47.855	1	383630			8121	7556	5457	5496	11034	11034					-0.08067437799059007
IYFEAREETGF	11	Unmodified	_IYFEAREETGF_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.5509948730469	3	454.550587	1360.62993	0.40726	0.00018512	-0.1189	-5.4046E-05	0.28836	0.00013107	454.55061576466926	79.989	0.68609	80.015	79.823	80.509	0.026428					55	24	4	0	0	0	0.37201	1	19280	19280		9.7643	1.0125	1	499430			8122	5236	5458	5497	11035	11035					-0.035958428816456944
IYFEYSHAF	9	Unmodified	_IYFEYSHAF_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7554321289062	2	588.771657	1175.52876	0.51215	0.00030154	-0.35854	-0.0002111	0.15361	9.0443E-05	588.7714643391441	62.318	0.78617	62.318	62.096	62.883	0					50	28	3	0	0	0	0.004452	4	14037	14037;14082;14089;14136		92.822	74.676	1	456640			8123	1794	5459	5498	11036;11037;11038;11039	11036					-0.05198249793670584
IYFEYSHAF	9	Unmodified	_IYFEYSHAF_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7555541992188	2	588.771657	1175.52876	0.57221	0.0003369	-0.51164	-0.00030124	0.060573	3.5664E-05	588.7713601185177	62.202	0.69115	62.275	62.087	62.778	0.073421					53	23	3	0	0	0	0.0053304	3	13886	13886;13905;13934		81.613	65.546	1	440820			8124	1794	5459	5498	11040;11041;11042	11040					-0.05198249793670584
IYFFHHYEL	9	Unmodified	_IYFFHHYEL_					0	0	0		ENST00000592618.5_1_19:1010351-1011343:-|nuORF;ENSG00000182087|ENST00000356663|TMEM259	ENST00000592618.5_1_19:1010351-1011343:-|nuORF	ENST00000592618.5_1_19:1010351-1011343:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.5415344238281	3	423.541475	1267.60259	0.088737	3.7584E-05	-0.025735	-1.09E-05	0.063002	2.6684E-05	423.54140767470176	58.637	0.80795	58.637	58.386	59.194	0					54	28	3	0	0	0	0.18398	1	12955	12955		20.415	10.65	1	177730			8125	4857	5460	5499	11043	11043					-0.02050281631341022
IYFFHHYEL	9	Unmodified	_IYFFHHYEL_					0	0	0		ENST00000592618.5_1_19:1010351-1011343:-|nuORF;ENSG00000182087|ENST00000356663|TMEM259	ENST00000592618.5_1_19:1010351-1011343:-|nuORF	ENST00000592618.5_1_19:1010351-1011343:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	423.5414123535156	3	423.541475	1267.60259	0.036653	1.5524E-05	-0.14297	-6.0554E-05	-0.10632	-4.503E-05	423.5411874603785	58.521	0.58009	58.592	58.415	58.995	0.070477					46	19	4	0	0	0	0.22083	1	12773	12773		16.149	3.2765	1	194580			8126	4857	5460	5499	11044	11044					-0.02050281631341022
IYFFKEWQSLF	11	Unmodified	_IYFFKEWQSLF_					0	0	0			REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7841796875	3	503.258856	1506.75474	0.52483	0.00026413	2.186	0.0011001	2.7108	0.0013642	503.59296172571015	97.953	0.34383	97.994	97.801	98.144	0.040855					28	17	2	0	0	0	0.31085	1	24802	24802		3.0723	1.6171	1	44317	+		8127	9934	5461	5500	11045	11045					0.02163074325562775
IYFILHLF	8	Unmodified	_IYFILHLF_					0	0	0			REV__ENSG00000166603|ENST00000299766|MC4R	REV__ENSG00000166603|ENST00000299766|MC4R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3207397460938	2	533.310221	1064.60589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.26	1	107.28	106.78	107.78	0.025711								0	0	0	0.38822	1	27476	27476		2.8892	0	1		+		8128	10085	5462	5501	11046	11046					0.07617013213325663
IYFKKPLNIYF	11	Unmodified	_IYFKKPLNIYF_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.6117248535156	3	482.611229	1444.81186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.203	1	64.274	63.774	64.774	0.071014								0	0	0	0.30565	1	14498	14498		12.856	9.7837	1				8129	509	5463	5502	11047	11047					0.10724541601916826
IYFPYVLKI	9	Unmodified	_IYFPYVLKI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3446655273438	2	578.344261	1154.67397	0.86803	0.00050202	-0.17078	-9.8769E-05	0.69725	0.00040325	578.3440984226736	80.937	0.78766	80.937	80.702	81.489	0					67	26	4	0	0	0	0.0087214	3	19728	19728;19783;19830		71.134	47.113	1	1045300			8130	5182	5464	5503	11048;11049;11050	11048					0.10281838073319705
IYFPYVLKI	9	Unmodified	_IYFPYVLKI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.344482421875	2	578.344261	1154.67397	0.6917	0.00040004	-0.056051	-3.2417E-05	0.63565	0.00036763	578.3441836796605	80.9	0.7688	80.923	80.708	81.477	0.023605					72	26	4	0	0	0	0.0076571	2	19571	19571;19624		74.423	45.341	1	1104000			8131	5182	5464	5503	11051;11052	11051					0.10281838073319705
IYFQKAHGF	9	Unmodified	_IYFQKAHGF_					0	0	0		ENST00000472335.2_1_6:127775227-127775335:-|nuORF	ENST00000472335.2_1_6:127775227-127775335:-|nuORF	ENST00000472335.2_1_6:127775227-127775335:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2691650390625	2	555.790184	1109.56581	0.39647	0.00022035	0.60238	0.0003348	0.99885	0.00055515	555.7902389642037	72.526	0.40808	72.582	72.401	72.809	0.055931					22	13	2	0	0	0	0.2404	1	17000	17000		13.508	3.3245	1	52940			8132	6682	5465	5504	11053	11053					0.015414665427442742
IYFQKAHGF	9	Unmodified	_IYFQKAHGF_					0	0	0		ENST00000472335.2_1_6:127775227-127775335:-|nuORF	ENST00000472335.2_1_6:127775227-127775335:-|nuORF	ENST00000472335.2_1_6:127775227-127775335:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	555.790184	1109.56581	0.15809	8.7864E-05	0.14454	8.0335E-05	0.30263	0.0001682	555.7901701090999	72.696	0.3855	72.696	72.468	72.853	0	0.056784	-0.00024238	NaN	13.508	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71879			8133	6682	5465	5504							0.015414665427442742
IYFSSVWTI	9	Unmodified	_IYFSSVWTI_					0	0	0			REV__nc|ENSG00000274150|A8MWK0|FADS2B	REV__nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7677612304688	2	558.292225	1114.5699	0.63838	0.0003564	-0.78762	-0.00043972	-0.14925	-8.3324E-05	558.2923737609581	93.586	0.32574	93.586	93.385	93.71	0					23	12	2	0	0	0	0.2446	1	23609	23609		11.64	0	1	76163	+		8134	12912	5466	5505	11054	11054					0.017195112458011863
IYFTDREHF	9	Unmodified	_IYFTDREHF_					0	0	0			REV__TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant	REV__TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7935791015625	2	614.293288	1226.57202	0.069638	4.2778E-05	0.1658	0.00010185	0.23543	0.00014463	614.7940425678657	85.391	1.7473	85.391	84.865	86.613	0					181	68	4	0	0	0	0.24021	3	21183	21153;21183;21315		13.906	3.8321	1	224020	+		8135	8969	5467	5506	11055;11056;11057	11056					-0.03220060016383286
IYFVRYKH	8	Unmodified	_IYFVRYKH_					0	0	0		ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2907104492188	2	563.313826	1124.6131	0.41709	0.00023495	2.0782	0.0011707	2.4953	0.0014056	563.3149725047892	62.816	0.35126	62.889	62.748	63.099	0.072701					18	13	2	0	0	0	0.3576	1	14133	14133		5.7604	0	1	100290			8136	3553	5468	5507	11058	11058					0.05577745813729962
IYFVRYKH	8	Unmodified	_IYFVRYKH_					0	0	0		ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	563.313826	1124.6131	0.43559	0.00024538	2.0828	0.0011733	2.5184	0.0014186	563.3150143716002	62.887	0.27645	62.887	62.722	62.999	0	-0.000641	7.4594E-07	NaN	5.7604	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148650			8137	3553	5468	5507							0.05577745813729962
IYFYWGGFF	9	Unmodified	_IYFYWGGFF_					0	0	0			REV__ENSG00000165240|ENST00000341514|ATP7A	REV__ENSG00000165240|ENST00000341514|ATP7A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.8388061523438	2	600.28166	1198.54877	0.53003	0.00031817	3.5552	0.0021341	4.0853	0.0024523	600.2837110205487	68.958	0.094826	68.958	68.888	68.983	0					5	3	2	0	0	0	0.25416	1	16090	16090		5.2307	0.90143	1	29796	+		8138	10031	5469	5508	11059	11059					-0.04256454063056481
IYGCFHVQ	8	Unmodified	_IYGCFHVQ_					0	0	0		nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.71563720703125	2	483.728738	965.442923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.277	1	68.277	67.777	68.777	0								0	0	0	0.38822	1	15883	15883		5.7604	0	1				8139	7566	5470	5509	11060	11060					-0.04118113180174987
IYGEKLQFIF	10	Unmodified	_IYGEKLQFIF_					0	0	0		ENST00000479309.6_1_2:169690730-169745796:-|nuORF;ENSG00000152253|ENST00000282074|SPC25	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8483276367188	2	629.347532	1256.68051	0.28218	0.00017759	0.12869	8.099E-05	0.41087	0.00025858	629.347597014811	75.211	0.41416	75.211	75.09	75.504	0					33	15	4	0	0	0	0.16124	2	18026	18004;18026		38.176	15.439	1	256910			8140	3492	5471	5510	11061;11062	11062					0.06243731234030747
IYGEKLQFIF	10	Unmodified	_IYGEKLQFIF_					0	0	0		ENST00000479309.6_1_2:169690730-169745796:-|nuORF;ENSG00000152253|ENST00000282074|SPC25	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3473510742188	2	629.347532	1256.68051	0.38513	0.00024238	-0.21795	-0.00013717	0.16719	0.00010522	629.3473254708584	75.201	0.38287	75.245	75.142	75.525	0.044037					24	13	2	0	0	0	0.27736	1	17853	17853		24.991	9.7425	1	227230			8141	3492	5471	5510	11063	11063					0.06243731234030747
IYGEKTYAF	9	Unmodified	_IYGEKTYAF_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2742309570312	2	546.274032	1090.53351	0.21356	0.00011666	-0.02357	-1.2875E-05	0.18999	0.00010379	546.2738395904883	48.56	0.43033	48.56	48.371	48.801	0					23	14	2	0	0	0	0.07372	1	9882	9882		38.176	14.155	1	123140			8142	5654	5472	5511	11064	11064					-0.008133656509244247
IYGGPTYYME	10	Unmodified	_IYGGPTYYME_					0	0	0		tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7951049804688	2	597.262807	1192.51106	0.44556	0.00026611	3.75	0.0022397	4.1956	0.0025059	597.2646639787246	92.178	0.50457	92.178	91.927	92.431	0					29	18	2	0	0	0	0.31585	1	23138	23138		10.824	3.215	1	85280			8143	13737	5473	5512	11065	11065					-0.07749333110837142
IYGIDTSIAI	10	Unmodified	_IYGIDTSIAI_					0	0	0			REV__tr|U7SWM2|U7SWM2_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01096PE=4SV=1	REV__tr|U7SWM2|U7SWM2_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01096PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.294921875	2	533.294965	1064.57538	0.55062	0.00029364	0.20294	0.00010823	0.75356	0.00040187	533.2949953359108	68.465	0.71094	68.529	68.192	68.903	0.063507					36	26	2	0	0	0	0.43972	1	15829	15829		6.7232	2.3939	1	115640	+		8144	13217	5474	5513	11066	11066					0.04567190037596447
IYGIKTKQIQ	10	Unmodified	_IYGIKTKQIQ_					0	0	0		ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2733764648438	2	596.358431	1190.70231	-0.1904	-0.00011355	4.3021	0.0025656	4.1117	0.002452	596.3610139512857	90.568	0.35388	90.602	90.422	90.776	0.034065					19	14	2	0	0	0	0.31585	1	22470	22470		10.824	2.9138	1	99860			8145	5600	5475	5514	11067	11067					0.11458535982615103
IYGLLKNPF	9	Unmodified	_IYGLLKNPF_					0	0	0		ENST00000463270.1_1_10:27418274-27425210:-|nuORF;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	ENST00000463270.1_1_10:27418274-27425210:-|nuORF	ENST00000463270.1_1_10:27418274-27425210:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.8107299804688	2	532.810585	1063.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.693	1	67.693	67.193	68.193	0								0	0	0	2.1807000000000003E-19	1	15707	15707		154.46	96.992	1				8146	2806	5476	5515	11068	11068					0.07735807862354704
IYGLLKNPF	9	Unmodified	_IYGLLKNPF_					0	0	0		ENST00000463270.1_1_10:27418274-27425210:-|nuORF;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	ENST00000463270.1_1_10:27418274-27425210:-|nuORF	ENST00000463270.1_1_10:27418274-27425210:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8107299804688	2	532.810585	1063.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.653	1	67.716	67.216	68.216	0.063507								0	0	0	9.492100000000001E-27	1	15540	15540		170.55	113.08	1				8147	2806	5476	5515	11069	11069					0.07735807862354704
IYGLLKNPF	9	Unmodified	_IYGLLKNPF_					0	0	0		ENST00000463270.1_1_10:27418274-27425210:-|nuORF;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	ENST00000463270.1_1_10:27418274-27425210:-|nuORF	ENST00000463270.1_1_10:27418274-27425210:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8099975585938	2	532.810585	1063.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.876	1	67.94	67.44	68.44	0.063507								0	0	0	0.011584	1	15608	15608		67.344	38.857	1				8148	2806	5476	5515	11070	11070					0.07735807862354704
IYGPIESTI	9	Unmodified	_IYGPIESTI_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7686462402344	2	496.768583	991.522613	0.68765	0.0003416	-0.0071286	-3.5412E-06	0.68052	0.00033806	496.7685491495868	64.912	0.37187	64.912	64.688	65.06	0					21	13	2	0	0	0	0.22344	1	14862	14862		15.847	0	1	116990			8149	3940	5477	5516	11071	11071					0.026512319748235313
IYGPIESTI	9	Unmodified	_IYGPIESTI_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2591857910156	2	496.768583	991.522613	0.53519	0.00026587	0.23038	0.00011444	0.76557	0.00038031	496.7685231193334	64.799	0.38927	64.868	64.722	65.111	0.068916					19	14	2	0	0	0	0.092418	1	14669	14669		34.102	12.356	1	96028			8150	3940	5477	5516	11072	11072					0.026512319748235313
IYGQLYVLF	9	Unmodified	_IYGQLYVLF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2756958007812	2	558.310418	1114.60628	0.66609	0.00037188	-0.41426	-0.00023129	0.25183	0.0001406	558.3102502935465	92.489	0.36358	92.489	92.271	92.634	0					19	13	2	0	0	0	0.164	1	23222	23222		30.225	9.7712	1	73957			8151	3059	5478	5517	11073	11073					0.05356388142513424
IYGRCHHRL	9	Unmodified	_IYGRCHHRL_					0	0	0			REV__nc|ENSG00000108846|O15438-3|ABCC3	REV__nc|ENSG00000108846|O15438-3|ABCC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.2753295898438	2	577.803634	1153.59272	0.42683	0.00024662	-0.41112	-0.00023754	0.015712	9.0784E-06	577.8030096671479	57.843	0.51681	57.843	57.65	58.166	0					37	17	4	0	0	0	0.25579	1	12755	12755		4.3292	0	1	180970	+		8152	8627	5479	5518	11074	11074					0.022062518822849597
IYGRCHHRL	9	Unmodified	_IYGRCHHRL_					0	0	0			REV__nc|ENSG00000108846|O15438-3|ABCC3	REV__nc|ENSG00000108846|O15438-3|ABCC3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	577.803634	1153.59272	0.39081	0.00022581	-0.73273	-0.00042337	-0.34191	-0.00019756	577.8031651765601	57.773	0.39342	57.841	57.606	58	0.068375	-0.0010772	-0.00011084	NaN	4.3292	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158290	+		8153	8627	5479	5518							0.022062518822849597
IYGSTFLYL	9	Unmodified	_IYGSTFLYL_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7870483398438	2	538.786776	1075.559	0.20843	0.0001123	-0.011267	-6.0704E-06	0.19716	0.00010623	538.7867359691769	86.374	0.51037	86.374	86.15	86.66	0					31	18	2	0	0	0	0.091303	1	21399	21399		44.407	2.3125	1	125770			8154	5453	5480	5519	11075	11075					0.02424108871491626
IYGSTFLYL	9	Unmodified	_IYGSTFLYL_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7860107421875	2	538.786776	1075.559	0.5047	0.00027193	-0.51202	-0.00027587	-0.007318	-3.9428E-06	538.7862605169738	86.32	0.48618	86.345	86.164	86.651	0.025169					28	18	2	0	0	0	0.10508	1	21242	21242		42.095	6.0504	1	169980			8155	5453	5480	5519	11076	11076					0.02424108871491626
IYGYLQELIF	10	Unmodified	_IYGYLQELIF_					0	0	0		nc|ENSG00000124786|Q9H1N7-2|SLC35B3;nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8397216796875	2	629.839539	1257.66453	0.42868	0.00027	-0.23529	-0.0001482	0.19339	0.0001218	629.8394190419713	98.079	0.58808	98.079	97.789	98.377	0					68	30	3	0	0	0	0.43214	1	24938	24938		8.1555	2.4237	1	493280			8156	2274	5481	5520	11077	11077					0.04600024997125729
IYGYLQELIF	10	Unmodified	_IYGYLQELIF_					0	0	0		nc|ENSG00000124786|Q9H1N7-2|SLC35B3;nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.840087890625	2	629.839539	1257.66453	0.56495	0.00035583	-0.35736	-0.00022508	0.20759	0.00013075	629.8394301876214	97.984	0.6475	98.024	97.755	98.403	0.040855					77	33	4	0	0	0	0.14333	2	24781	24781;24829		40.239	27.999	1	841350			8157	2274	5481	5520	11078;11079	11078					0.04600024997125729
IYGYRLRR	8	Unmodified	_IYGYRLRR_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.8058471679688	2	548.82235	1095.63015	0.30258	0.00016606	2.8915	0.0015869	3.1941	0.001753	548.8234336438178	79.308	0.21474	79.334	79.223	79.437	0.026436					11	7	2	0	0	0	0.35759	1	19067	19067		10.183	0	1	40058			8158	1193	5482	5521	11080	11080					0.0861566641956415
IYGYTFYSI	9	Unmodified	_IYGYTFYSI_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7598266601562	2	563.776408	1125.53826	0.81171	0.00045762	-1.3941	-0.00078594	-0.58235	-0.00032832	563.7756780352137	80.356	0.58623	80.356	80.169	80.756	0					42	20	3	0	0	0	0.0025191	4	19592	19552;19592;19635;19683		112.59	72.643	1	394330			8159	4954	5483	5522	11081;11082;11083;11084	11082					-0.019484815081341367
IYGYTFYSI	9	Unmodified	_IYGYTFYSI_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7588500976562	2	563.776408	1125.53826	0.68373	0.00038547	-1.9649	-0.0011078	-1.2812	-0.00072229	563.7755453520516	80.476	1.5536	80.5	80.018	81.571	0.023605					74	55	2	0	0	0	0.0037915	3	19440	19440;19491;19535		104.8	64.849	1	458360			8160	4954	5483	5522	11085;11086;11087	11085					-0.019484815081341367
IYGYTFYSI	9	Unmodified	_IYGYTFYSI_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7582397460938	2	563.776408	1125.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.909	1	80.933	80.433	81.433	0.023605								0	0	0	0.1048	1	19579	19579		32.305	16.458	1				8161	4954	5483	5522	11088	11088					-0.019484815081341367
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8218383789062	2	545.266207	1088.51786	0.40741	0.00022215	0.97198	0.00052999	1.3794	0.00075213	545.2664591256153	68.313	0.30622	68.313	68.07	68.377	0					14	10	2	0	0	0	0.23478	1	15900	15900		17.113	2.5312	1	38958			8162	1863	5484	5523	11089	11089					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.266207	1088.51786	0.47205	0.00025739	0.50505	0.00027539	0.9771	0.00053278	545.266382715525	68.191	0.1673	68.254	68.192	68.359	0.063507	-0.029441	-0.00037313	NaN	17.113	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55497			8163	1863	5484	5523							-0.022856521679386788
IYHKYKQF	8	Unmodified	_IYHKYKQF_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA;REV__ENSG00000218823|ENST00000404991|PAPOLB	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3023681640625	2	563.805834	1125.59712	-0.061096	-3.4446E-05	-2.7237	-0.0015357	-2.7848	-0.0015701	563.8042270417956	107.13	0.075851	107.13	107.08	107.16	0					7	5	2	0	0	0	0.3576	1	27641	27641		0.69038	0	1	45021	+		8164	8298;11019	5485	5524	11090	11090					0.03934039576847681
IYHLCWAFE	9	Unmodified	_IYHLCWAFE_					0	0	0			REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.33740234375	2	591.276052	1180.53755	0.50998	0.00030154	3.3598	0.0019865	3.8697	0.0022881	591.2780426857689	75.182	0.26226	75.182	75.09	75.352	0					12	9	2	0	0	0	0.22289	1	18020	18020		18.135	1.0221	1	125460	+		8165	8732	5486	5525	11091	11091					-0.045495994288557995
IYHLFTDMVT	10	Unmodified	_IYHLFTDMVT_					0	0	0			REV__TAAR1|p.P275T|1|0.19|ENSG00000146399|chr6:132645181-132645181|G/T|missense_variant	REV__TAAR1|p.P275T|1|0.19|ENSG00000146399|chr6:132645181-132645181|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3065795898438	2	620.307549	1238.60055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.19	1	94.228	93.728	94.728	0.038086								0	0	0	0.33443	1	23619	23619		6.7232	0.51738	1		+		8166	13022	5487	5526	11092	11092					-0.009210784314745979
IYHNPTANSF	10	Unmodified	_IYHNPTANSF_					0	0	0		VASP|p.R48C|1|0.09|ENSG00000125753|chr19:45517799-45517799|C/T|missense_variant;ENST00000586619.1_1_19:46010999-46025451:+|nuORF;ENSG00000125753|ENST00000245932|VASP	VASP|p.R48C|1|0.09|ENSG00000125753|chr19:45517799-45517799|C/T|missense_variant	VASP|p.R48C|1|0.09|ENSG00000125753|chr19:45517799-45517799|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2777099609375	2	582.277638	1162.54072	0.48859	0.0002845	-0.23568	-0.00013723	0.25291	0.00014726	582.2772755853325	38.955	0.41035	39.042	38.885	39.295	0.08688					23	15	2	0	0	0	0.43771	1	6853	6853		7.1017	3.8204	1	36965			8167	2309	5488	5527	11093	11093					-0.03404633050490702
IYHNPTANSF	10	Unmodified	_IYHNPTANSF_					0	0	0		VASP|p.R48C|1|0.09|ENSG00000125753|chr19:45517799-45517799|C/T|missense_variant;ENST00000586619.1_1_19:46010999-46025451:+|nuORF;ENSG00000125753|ENST00000245932|VASP	VASP|p.R48C|1|0.09|ENSG00000125753|chr19:45517799-45517799|C/T|missense_variant	VASP|p.R48C|1|0.09|ENSG00000125753|chr19:45517799-45517799|C/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	582.277638	1162.54072	0.29127	0.0001696	-0.38755	-0.00022566	-0.096285	-5.6065E-05	582.2771959274266	39.059	0.50878	39.059	38.87	39.379	0	0.0088064	-0.00010185	NaN	7.1017	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36021			8168	2309	5488	5527							-0.03404633050490702
IYHQVAVQF	9	Unmodified	_IYHQVAVQF_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ENST00000538526.5_3_12:109697932-109704164:+|nuORF;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7955322265625	2	552.795466	1103.57638	0.2885	0.00015948	2.1811	0.0012057	2.4696	0.0013652	552.7965510767249	51.211	0.94759	51.211	50.795	51.743	0					62	31	3	0	0	0	0.14091	1	10625	10625		25.399	4.9848	1	218820			8169	845;7629	5489	5528	11094	11094					0.028734491971817988
IYHQVAVQF	9	Unmodified	_IYHQVAVQF_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ENST00000538526.5_3_12:109697932-109704164:+|nuORF;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.796142578125	2	552.795466	1103.57638	0.46063	0.00025464	2.1065	0.0011645	2.5672	0.0014191	552.796496764906	51.2	0.89021	51.27	50.766	51.656	0.069874					69	34	3	0	0	0	0.14091	1	10471	10471		25.399	3.8623	1	194360			8170	845;7629	5489	5528	11095	11095					0.028734491971817988
IYHSGASGN	9	Unmodified	_IYHSGASGN_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2098693847656	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.419	1	79.445	78.945	79.945	0.026436								0	0	0	0.2722	1	19126	19126		4.756	1.8668	1		+		8171	8036	5490	5529	11096	11096					-0.05213122210182064
IYHTGTFAQI	10	Unmodified	_IYHTGTFAQI_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7982177734375	2	575.798206	1149.58186	0.18892	0.00010878	0.035728	2.0572E-05	0.22465	0.00012935	575.7981617830488	50.188	0.48981	50.188	50.024	50.514	0					47	17	4	0	0	0	0.021784	1	10366	10366		66.457	28.281	1	338790			8172	5215	5491	5530	11097	11097					0.013051279890078149
IYHTGTFAQI	10	Unmodified	_IYHTGTFAQI_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.79833984375	2	575.798206	1149.58186	0.27698	0.00015948	0.12468	7.1788E-05	0.40165	0.00023127	575.7981882403922	50.136	0.73448	50.209	50.007	50.741	0.07312					45	25	3	0	0	0	0.021784	1	10219	10219		66.457	31.525	1	303470			8173	5215	5491	5530	11098	11098					0.013051279890078149
IYHWLLGTDK	10	Unmodified	_IYHWLLGTDK_					0	0	0		ENST00000560419.1_1_14:75892600-75892639:-|nuORF	ENST00000560419.1_1_14:75892600-75892639:-|nuORF	ENST00000560419.1_1_14:75892600-75892639:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7955932617188	2	623.334956	1244.65536	0.11816	7.365E-05	0.2393	0.00014916	0.35746	0.00022281	623.3346717329334	75.438	0.15191	75.438	75.326	75.478	0					8	5	2	0	0	0	0.31771	1	18052	18052		4.3292	0	1	58313			8174	7147	5492	5531	11099	11099					0.0428167643146935
IYIAATYTF	9	Unmodified	_IYIAATYTF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7797241210938	2	531.778951	1061.54335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.794	1	75.838	75.338	76.338	0.044037								0	0	0	0.011584	1	18021	18021		67.344	43.323	1				8175	568	5493	5532	11100	11100					0.015038223544479479
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL	HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7664794921875	2	494.766178	987.517802	0.33598	0.00016623	0.13261	6.561E-05	0.46859	0.00023184	494.7661261322913	52.77	0.8556	52.77	52.555	53.41	0					98	32	4	0	0	0	0.0030805	4	11125	11125;11173;11225;11275		109.15	62.233	1	1544700			8176	1433	5494	5533	11101;11102;11103;11104	11101					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL	HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2679748535156	2	494.766178	987.517802	0.56226	0.00027819	-0.41754	-0.00020658	0.14472	7.1605E-05	494.7660204284994	53.624	0.91374	53.624	53.433	54.347	0					45	33	2	0	0	0	0.038949	2	11395	11395;11446		45.75	10.125	1	75759			8177	1433	5494	5533	11105;11106	11105					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL	HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.76629638671875	2	494.766178	987.517802	0.4433	0.00021933	-0.1094	-5.4127E-05	0.3339	0.0001652	494.76606298371837	52.725	0.94318	52.792	52.578	53.521	0.067173					92	42	4	0	0	0	0.0044274	4	11022	10977;11022;11066;11109		93.763	53.314	1	1377200			8178	1433	5494	5533	11107;11108;11109;11110	11108					0.023543926227148404
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.305908203125	2	541.305667	1080.59678	0.42705	0.00023116	-0.16554	-8.9609E-05	0.2615	0.00014155	541.3053388487234	62.456	1.0585	62.456	62.203	63.261	0					94	40	4	0	0	0	0.005983	3	14103	14103;14152;14195		79.596	43.552	1	1326100			8179	1161	5495	5534	11111;11112;11113	11111					0.059706198569983826
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.3058471679688	2	541.305667	1080.59678	0.45927	0.00024861	-0.18729	-0.00010138	0.27198	0.00014722	541.3053192137835	62.337	1.0481	62.409	62.142	63.19	0.072697					89	38	4	0	0	0	0.012041	2	13940	13940;13992		63.961	27.916	1	950060			8180	1161	5495	5534	11114;11115	11114					0.059706198569983826
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	541.305667	1080.59678	0.45927	0.00024861	-0.18729	-0.00010138	0.27198	0.00014722	541.3053192137835	62.337	1.0481	62.409	62.142	63.19	0.072697	-0.023223	-1.4091E-05	NaN	79.596	89	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950060			8181	1161	5495	5534							0.059706198569983826
IYIGLLQQL	9	Unmodified	_IYIGLLQQL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.82373046875	2	530.823692	1059.63283	0.28781	0.00015278	1.0874	0.00057719	1.3752	0.00072997	530.823639830776	89.084	0.62978	89.084	88.845	89.475	0					46	24	4	0	0	0	0.0046476	1	22217	22217		85.357	27.885	1	437130			8182	2811	5496	5535	11116	11116					0.10540077033874695
IYIGLLQQL	9	Unmodified	_IYIGLLQQL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8238525390625	2	530.823692	1059.63283	0.35759	0.00018982	0.60744	0.00032244	0.96502	0.00051226	530.8236813283384	89.041	0.63895	89.073	88.846	89.485	0.032257					34	24	3	0	0	0	0.0053304	1	22031	22031		81.613	24.142	1	413190			8183	2811	5496	5535	11117	11117					0.10540077033874695
IYIHRGELEN	10	Unmodified	_IYIHRGELEN_					0	0	0			REV__nc|ENSG00000134853|P16234-2|PDGFRA	REV__nc|ENSG00000134853|P16234-2|PDGFRA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.2129821777344	3	415.219172	1242.63569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.925	1	46.011	45.511	46.511	0.085617								0	0	0	0.33556	1	8954	8954		5.4027	0.5057	1		+		8184	9189	5497	5536	11118	11118					0.024073004207366466
IYIHSKVLI	9	Unmodified	_IYIHSKVLI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2781372070312	2	543.33951	1084.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.344	1	46.429	45.929	46.929	0.085617								0	0	0	0.24978	1	9081	9081		9.3831	2.66	1				8185	2424	5498	5537	11119	11119					0.1255206978780734
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2946166992188	2	584.337301	1166.66005	0.072941	4.2622E-05	-0.021091	-1.2324E-05	0.05185	3.0298E-05	584.3372442433773	43.64	0.89147	43.64	43.467	44.359	0					61	31	3	0	0	0	0.073221	1	8440	8440		50.855	31.598	1	99068			8186	1260	5499	5538	11120	11120					0.08338605364883733
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2950439453125	2	584.337301	1166.66005	0.30919	0.00018067	-0.23187	-0.00013549	0.077318	4.518E-05	584.337106336088	43.511	0.66842	43.599	43.361	44.029	0.088924					53	24	3	0	0	0	0.043667	1	8242	8242		60.39	34.99	1	171020			8187	1260	5499	5538	11121	11121					0.08338605364883733
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.8539428710938	2	577.352617	1152.69068	0.1094	6.316E-05	-0.030406	-1.7555E-05	0.078989	4.5604E-05	577.3525024289786	46.31	0.42982	46.31	46.098	46.528	0					32	15	3	0	0	0	0.0045224	2	9179	9179;9230		90.135	57.349	1	371590			8188	1373	5500	5539	11122;11123	11122					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3526611328125	2	577.352617	1152.69068	0.142	8.1983E-05	0.10612	6.127E-05	0.24812	0.00014325	577.3525994858502	46.207	0.42484	46.292	46.077	46.502	0.085621					34	14	3	0	0	0	0.0043442	2	9067	9022;9067		96.936	56.986	1	340040			8189	1373	5500	5539	11124;11125	11125					0.12044338959276502
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8157348632812	2	544.815533	1087.61651	0.54423	0.0002965	0.087465	4.7653E-05	0.63169	0.00034416	544.8154879601516	93.53	0.69099	93.53	93.157	93.848	0					68	26	4	0	0	0	0.011655	2	23547	23547;23589		64.236	41.088	1	684240			8190	3383	5501	5540	11126;11127	11126					0.07620951077092286
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.815673828125	2	544.815533	1087.61651	0.481	0.00026205	0.067855	3.6968E-05	0.54885	0.00029902	544.81547483906	93.531	0.59991	93.568	93.313	93.913	0.037369					67	23	4	0	0	0	0.037705	2	23415	23366;23415		46.021	31.183	1	706800			8191	3383	5501	5540	11128;11129	11129					0.07620951077092286
IYILSPYIF	9	Unmodified	_IYILSPYIF_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-4|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.821533203125	2	564.820618	1127.62668	0.63333	0.00035772	1.4577	0.00082333	2.091	0.001181	564.8212935993062	85.345	0.78647	85.368	85.007	85.794	0.023125					51	31	2	0	0	0	0.2796	1	21002	21002		9.3474	0	1	481960	+		8192	10422	5502	5541	11130	11130					0.0679755880232733
IYILTFPLY	9	Unmodified	_IYILTFPLY_					0	0	0		ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.8281860351562	2	571.828443	1141.64233	0.30837	0.00017633	-0.22461	-0.00012844	0.083761	4.7897E-05	571.8281420611127	101.5	0.50926	101.5	101.3	101.81	0					70	33	3	0	0	0	0.21398	1	26048	26048		16.942	12.186	1	118920			8193	5025	5503	5542	11131	11131					0.07717845319371008
IYILTFPLY	9	Unmodified	_IYILTFPLY_					0	0	0		ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	571.828443	1141.64233	0.42909	0.00024537	-0.49245	-0.00028159	-0.063357	-3.6229E-05	571.8281229323273	101.46	0.53156	101.51	101.27	101.8	0.042656	0.0013903	-0.00010622	NaN	16.942	69	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119760			8194	5025	5503	5542							0.07717845319371008
IYIMDGDDTL	10	Unmodified	_IYIMDGDDTL_					0	0	0			REV__nc|ENSG00000100644|Q16665-2|HIF1A	REV__nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.333251953125	2	578.265547	1154.51654	0.50877	0.0002942	1.0467	0.00060525	1.5554	0.00089945	578.7683053613589	81.754	0.32402	81.776	81.645	81.969	0.021866					18	9	3	0	0	0	0.31691	1	19818	19818		7.2892	0.93513	1	124930	+		8195	8402	5504	5543	11132	11132					-0.054536543190124576
IYINDEAQVE	10	Unmodified	_IYINDEAQVE_					0	0	0			REV__ENSG00000113249|ENST00000523175|HAVCR1	REV__ENSG00000113249|ENST00000523175|HAVCR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8564453125	2	597.287868	1192.56118	0.53861	0.00032171	0.52603	0.00031419	1.0646	0.0006359	597.7891859597072	85.2	0.53675	85.2	84.898	85.435	0					26	18	2	0	0	0	0.31616	1	21106	21106		10.074	0	1	98266	+		8196	8736	5505	5544	11133	11133					-0.02739507181308909
IYIPSYFDF	9	Unmodified	_IYIPSYFDF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7846069335938	2	582.784233	1163.55391	0.51709	0.00030135	0.12731	7.4197E-05	0.64441	0.00037555	582.784230698097	94.605	1.0684	94.605	94.371	95.439	0					157	44	5	0	0	0	3.5265E-09	4	23916	23874;23916;23964;24053		170.55	145.15	1	3778900			8197	2010	5506	5545	11134;11135;11136;11137	11135					-0.021321949910998228
IYIPSYFDF	9	Unmodified	_IYIPSYFDF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7844848632812	2	582.784233	1163.55391	0.59679	0.0003478	-0.16678	-9.7196E-05	0.43001	0.0002506	582.7840134721866	96.846	0.60458	96.846	96.552	97.156	0					61	29	3	0	0	0	0.11022	1	24582	24582		30.225	30.225	1	351380			8198	2010	5506	5545	11138	11138					-0.021321949910998228
IYIPSYFDF	9	Unmodified	_IYIPSYFDF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7854614257812	2	582.784233	1163.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.543	1	97.543	97.043	98.043	0								0	0	0	0.2722	1	24798	24798		4.756	0	1				8199	2010	5506	5545	11139	11139					-0.021321949910998228
IYIPSYFDF	9	Unmodified	_IYIPSYFDF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7845458984375	2	582.784233	1163.55391	0.55632	0.00032421	0.038369	2.2361E-05	0.59469	0.00034657	582.7841839714918	94.576	1.0783	94.614	94.37	95.449	0.038086					152	44	5	0	0	0	3.5265E-09	4	23751	23701;23751;23798;23855		170.55	138.43	1	4186900			8200	2010	5506	5545	11140;11141;11142;11143	11141					-0.021321949910998228
IYIPSYFDF	9	Unmodified	_IYIPSYFDF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7845458984375	2	582.784233	1163.55391	0.72776	0.00042413	-0.25479	-0.00014849	0.47296	0.00027564	582.7838782964881	96.754	0.52243	96.794	96.588	97.111	0.039772					59	25	3	0	0	0	0.073832	2	24417	24376;24417		38.151	16.405	1	473630			8201	2010	5506	5545	11144;11145	11145					-0.021321949910998228
IYIPTAILW	9	Unmodified	_IYIPTAILW_					0	0	0		nc|ENSG00000058799|Q9Y548-2|YIPF1;ENSG00000058799|ENST00000072644|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3208618164062	2	545.320786	1088.62702	0.59778	0.00032598	0.028763	1.5685E-05	0.62654	0.00034167	545.3206769657396	97.959	0.72999	97.959	97.741	98.471	0					105	38	4	0	0	0	0.004541	3	24930	24930;24972;25017		89.427	45.02	1	1139900			8202	630	5507	5546	11146;11147;11148	11146					0.08624978522175297
IYIPTAILW	9	Unmodified	_IYIPTAILW_					0	0	0		nc|ENSG00000058799|Q9Y548-2|YIPF1;ENSG00000058799|ENST00000072644|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.321044921875	2	545.320786	1088.62702	0.56858	0.00031006	-0.047901	-2.6121E-05	0.52068	0.00028394	545.3205943145347	97.984	0.67505	98.024	97.755	98.43	0.040855					99	34	4	0	0	0	0.0030029	5	24777	24722;24731;24777;24822;24878		109.63	56.054	1	995000			8203	630	5507	5546	11149;11150;11151;11152;11153	11151					0.08624978522175297
IYIPTLAVL	9	Unmodified	_IYIPTLAVL_					0	0	0		ENSG00000064601|ENST00000646241|CTSA;ENST00000606782.1_1_20:44521054-44521549:+|nuORF;ENST00000485627.1_1_20:44520959-44522735:+|nuORF;nc|ENSG00000064601|P10619-2|CTSA	ENSG00000064601|ENST00000646241|CTSA	ENSG00000064601|ENST00000646241|CTSA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8147888183594	2	501.815336	1001.61612	0.41484	0.00020818	-0.9096	-0.00045645	-0.49475	-0.00024827	501.8148364112637	93.801	0.23843	93.838	93.674	93.913	0.037369					13	8	2	0	0	0	0.17247	1	23513	23513		21.747	4.8044	1	152470			8204	666	5508	5547	11154	11154					0.11537576147907203
IYISKIVVEF	10	Unmodified	_IYISKIVVEF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8574829101562	2	605.857732	1209.70091	0.33834	0.00020499	-0.3647	-0.00022095	-0.026357	-1.5969E-05	605.8574874714888	73.317	0.48651	73.317	73.174	73.661	0					31	17	2	0	0	0	0.072378	2	17428	17428;17479		51.488	34.375	1	487470			8205	2499	5509	5548	11155;11156	11155					0.10444901893833958
IYISKIVVEF	10	Unmodified	_IYISKIVVEF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3591918945312	2	605.857732	1209.70091	0.59934	0.00036311	-0.49371	-0.00029912	0.10563	6.3996E-05	605.8572737538756	73.288	0.43913	73.341	73.152	73.591	0.052567					29	17	2	0	0	0	0.072378	2	17243	17243;17288		51.488	34.375	1	259140			8206	2499	5509	5548	11157;11158	11157					0.10444901893833958
IYISSDYVF	9	Unmodified	_IYISSDYVF_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3438720703125	2	553.773865	1105.53318	0.43643	0.00024169	0.63968	0.00035424	1.0761	0.00059592	553.7743050066654	77.387	0.40845	77.387	77.307	77.716	0					28	17	2	0	0	0	0.023515	1	18674	18674		67.344	42.67	1	300300			8207	526	5510	5549	11159	11159					-0.015367853707630275
IYISSDYVF	9	Unmodified	_IYISSDYVF_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	553.773865	1105.53318	0.6253	0.00034627	0.23051	0.00012765	0.85581	0.00047393	553.7740782840137	77.369	0.38145	77.403	77.326	77.708	0.034485	0.0079024	-0.00014334	NaN	67.344	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334940			8208	526	5510	5549							-0.015367853707630275
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.8372802734375	2	607.836997	1213.65944	0.63526	0.00038613	-0.2413	-0.00014667	0.39396	0.00023946	607.8365672739939	62.905	0.4286	62.905	62.66	63.089	0					31	16	3	0	0	0	0.016485	1	14227	14227		70.929	27.156	1	426990			8209	1207	5511	5550	11160	11160					0.061157211345062024
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.8369750976562	2	607.836997	1213.65944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.008	1	63.008	62.508	63.508	0								0	0	0	0.19393	1	14276	14276		30.703	10.25	1				8210	1207	5511	5550	11161	11161					0.061157211345062024
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.837158203125	2	607.836997	1213.65944	0.68156	0.00041428	0.02917	1.7731E-05	0.71073	0.00043201	607.8366435552354	62.754	0.46762	62.827	62.631	63.099	0.072701					35	17	3	0	0	0	0.011931	1	14060	14060		74.772	34.533	1	318030			8211	1207	5511	5550	11162	11162					0.061157211345062024
IYITDGNMQL	10	Unmodified	_IYITDGNMQL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2913818359375	2	584.289356	1166.56416	0.57803	0.00033774	2.799	0.0016354	3.3771	0.0019732	584.7924854507298	96.452	0.51807	96.452	96.332	96.851	0					32	23	2	0	0	0	0.41688	1	24525	24525		10.074	2.1638	1	147080			8212	1428	5512	5551	11163	11163					-0.012459553281814806
IYIVGGCLHEL	11	Unmodified	_IYIVGGCLHEL_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.8235473632812	2	608.823366	1215.63218	0.55601	0.00033851	-0.79376	-0.00048326	-0.23775	-0.00014475	608.8229885220769	67.578	1.2053	67.578	67.263	68.469	0					77	45	3	0	0	0	0.22106	2	15660	15660;15710		41.84	31.016	1	198610			8213	999	5513	5552	11164;11165	11164					0.03298914322499513
IYIVGGCLHEL	11	Unmodified	_IYIVGGCLHEL_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.8222045898438	2	608.823366	1215.63218	0.86657	0.00052759	-1.1099	-0.00067576	-0.24338	-0.00014817	608.8227180249326	67.528	0.86725	67.593	67.264	68.131	0.065071					47	30	2	0	0	0	0.14202	3	15506	15483;15506;15548		41.84	31.016	1	227200			8214	999	5513	5552	11166;11167;11168	11167					0.03298914322499513
IYIVRGLEL	9	Unmodified	_IYIVRGLEL_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.240966796875	2	538.329142	1074.64373	0.64407	0.00034672	0.0074894	4.0318E-06	0.65156	0.00035075	538.3290259170162	68.236	0.52547	68.299	68.089	68.614	0.063499					30	19	3	0	0	0	0.18759	1	15747	15747		27.629	4.8925	1	162190			8215	2894	5514	5553	11169	11169					0.10939479408125408
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3013305664062	2	599.300581	1196.58661	0.49006	0.00029369	-0.20435	-0.00012247	0.2857	0.00017122	599.3006658677334	93.756	1.9431	93.756	93.462	95.405	0					258	87	6	0	0	0	5.3024000000000004E-24	10	23655	23655;23697;23702;23743;23791;23841;23884;24040;24082;24148		222.91	156.45	1	15676000			8216	2929	5515	5554	11170;11171;11172;11173;11174;11175;11176;11177;11178;11179	11170					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.80322265625	2	599.300581	1196.58661	0.53956	0.00032336	1.0858	0.00065074	1.6254	0.0009741	599.3014619995577	97.375	0.20355	97.375	97.235	97.438	0					12	7	2	0	0	0	0.24021	1	24755	24755		13.906	8.6092	1	68427			8217	2929	5515	5554	11180	11180					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.28857421875	2	599.300581	1196.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.891	1	96.891	96.391	97.391	0								0	0	0	0.19239	1	24603	24603		19.257	4.4187	1				8218	2929	5515	5554	11181	11181					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3015747070312	2	599.300581	1196.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.54	1	97.54	97.04	98.04	0								0	0	0	0.22786	1	24797	24797		13.906	9.5768	1				8219	2929	5515	5554	11182	11182					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3153076171875	2	599.300581	1196.58661	0.2678	0.00016049	0.45537	0.0002729	0.72317	0.0004334	599.3008224930815	95.668	0.38912	95.668	95.575	95.964	0					29	18	2	0	0	0	0.16944	1	24262	24262		30.637	12.49	1	105830			8220	2929	5515	5554	11183	11183					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3152465820312	2	599.300581	1196.58661	0.32505	0.0001948	-0.15387	-9.2211E-05	0.17118	0.00010259	599.3002062919421	96.102	0.36229	96.102	95.936	96.299	0					28	18	2	0	0	0	0.099539	1	24319	24319		38.176	21.063	1	77596			8221	2929	5515	5554	11184	11184					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3005981445312	2	599.300581	1196.58661	0.38822	0.00023266	-0.13611	-8.157E-05	0.25211	0.00015109	599.3005613497803	93.713	1.9389	93.75	93.467	95.406	0.037369					261	84	5	0	0	0	1.0413E-17	10	23475	23428;23475;23518;23557;23600;23645;23694;23782;23869;23915		205.78	139.32	1	10811000			8222	2929	5515	5554	11185;11186;11187;11188;11189;11190;11191;11192;11193;11194	11186					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3023681640625	2	599.300581	1196.58661	0.53465	0.00032042	0.79061	0.00047381	1.3253	0.00079423	599.3012422524739	97.425	0.40686	97.466	97.275	97.682	0.040855					28	20	2	0	0	0	0.18364	1	24653	24653		20.454	10.38	1	65630			8223	2929	5515	5554	11195	11195					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.301513671875	2	599.300581	1196.58661	0.2612	0.00015653	0.54792	0.00032837	0.80912	0.00048491	599.3010595489919	95.663	0.52662	95.702	95.634	96.16	0.038872					33	24	2	0	0	0	0.072867	1	24203	24203		38.176	31.545	1	118690			8224	2929	5515	5554	11196	11196					-0.003819878682406852
IYIYPDKL	8	Unmodified	_IYIYPDKL_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.806640625	2	512.789318	1023.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.98	1	101.98	101.48	102.48	0								0	0	0	0.38822	1	26149	26149		7.9102	0	1				8225	2329	5516	5555	11197	11197					0.05324412734148609
IYKAIGTFLF	10	Unmodified	_IYKAIGTFLF_					0	0	0		ENSG00000067113|ENST00000307259|PLPP1;nc|ENSG00000067113|O14494-2|PLPP1	ENSG00000067113|ENST00000307259|PLPP1	ENSG00000067113|ENST00000307259|PLPP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8095703125	2	586.839342	1171.66413	0.63316	0.00037156	0.82474	0.00048399	1.4579	0.00085555	586.8400139687366	74.656	0.18825	74.656	74.579	74.767	0					10	6	2	0	0	0	0.21878	1	17815	17815		49.554	21.381	1	96106			8226	707	5517	5556	11198	11198					0.08516650067940645
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.2117004394531	3	426.211794	1275.61355	0.45181	0.00019256	-0.58187	-0.000248	-0.13006	-5.5434E-05	426.21159674539064	37.528	0.67365	37.528	37.315	37.988	0					50	23	3	0	0	0	0.287	2	6533	6533;6586		8.4443	4.8572	1	95790			8227	3842	5518	5557	11199;11200	11199					-0.013229240477357962
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.5459899902344	3	426.211794	1275.61355	0.13978	5.9578E-05	-0.039222	-1.6717E-05	0.10056	4.2861E-05	426.211798933878	37.414	0.68497	37.498	37.299	37.984	0.084476					54	23	3	0	0	0	0.2779	2	6372	6372;6418		9.544	3.3521	1	105920			8228	3842	5518	5557	11201;11202	11201					-0.013229240477357962
IYKEIWSI	8	Unmodified	_IYKEIWSI_					0	0	0			REV__tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1	REV__tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2819213867188	2	526.294768	1050.57498	0.52613	0.0002769	-1.1066	-0.0005824	-0.58047	-0.0003055	526.2933123047868	64.737	0.6168	64.737	64.328	64.945	0					27	22	2	0	0	0	0.45077	1	14749	14749		19.439	2.4967	1	73934	+		8229	13169	5519	5558	11203	11203					0.051718151084287456
IYKEIWSI	8	Unmodified	_IYKEIWSI_					0	0	0			REV__tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1	REV__tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2816162109375	2	526.294768	1050.57498	0.34462	0.00018137	1.3269	0.00069836	1.6716	0.00087973	526.295057327755	64.555	0.38904	64.624	64.478	64.867	0.068916					19	14	2	0	0	0	0.42348	1	14607	14607		23.148	3.7094	1	65934	+		8230	13169	5519	5558	11204	11204					0.051718151084287456
IYKFITERF	9	Unmodified	_IYKFITERF_					0	0	0		ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2284851074219	3	406.229008	1215.66519	0.45188	0.00018357	-0.040178	-1.6321E-05	0.41171	0.00016725	406.22890164066683	53.261	0.6296	53.261	52.945	53.575	0					38	25	2	0	0	0	0.24951	1	11309	11309		10.899	4.7071	1	87340			8231	4756	5520	5559	11205	11205					0.06598864436841723
IYKFITERF	9	Unmodified	_IYKFITERF_					0	0	0		ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.56365966796875	3	406.229008	1215.66519	0.19713	8.008E-05	-0.14878	-6.0438E-05	0.048352	1.9642E-05	406.56330951506135	53.234	0.24399	53.3	53.188	53.432	0.06543					28	11	3	0	0	0	0.24273	2	11164	11144;11164		13.615	4.0709	1	100480			8232	4756	5520	5559	11206;11207	11207					0.06598864436841723
IYKFLTPYL	9	Unmodified	_IYKFLTPYL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7877197265625	2	579.333893	1156.65323	0.090723	5.2559E-05	0.3186	0.00018457	0.40932	0.00023713	579.3340840312553	72.836	0.76804	72.836	72.631	73.399	0					72	26	4	0	0	0	0.046885	1	17291	17291		63.961	29.858	1	933570			8233	5243	5521	5560	11208	11208					0.08117247693667196
IYKFLTPYL	9	Unmodified	_IYKFLTPYL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7877197265625	2	579.333893	1156.65323	0.27018	0.00015653	0.19132	0.00011084	0.4615	0.00026736	579.3339243886951	72.813	0.7971	72.866	72.623	73.42	0.052574					66	28	4	0	0	0	0.071889	1	17118	17118		55.503	23.197	1	858470			8234	5243	5521	5560	11209	11209					0.08117247693667196
IYKGIPLQL	9	Unmodified	_IYKGIPLQL_					0	0	0		ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7731323242188	2	522.826235	1043.63792	0.49096	0.00025669	-1.4806	-0.00077412	-0.98968	-0.00051743	522.8255748951555	63.692	0.46748	63.692	63.531	63.998	0					21	16	2	0	0	0	0.2229	1	14474	14474		19.257	9.1831	1	115180			8235	3365	5522	5561	11210	11210					0.11784380896460789
IYKIDFVRF	9	Unmodified	_IYKIDFVRF_					0	0	0		nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000109103|ENST00000335765|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	400.8970031738281	3	400.89737	1199.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.382	1	63.382	62.882	63.882	0								0	0	0	0.080799	1	14391	14391		39.213	14.222	1				8236	1623	5523	5562	11211	11211					0.07843168299450554
IYKPVTDFFL	10	Unmodified	_IYKPVTDFFL_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8419799804688	2	621.842082	1241.66961	0.0575	3.5756E-05	-0.24948	-0.00015514	-0.19198	-0.00011938	621.842170081462	74.61	0.56085	74.61	74.4	74.961	0					63	20	4	0	0	0	0.015562	2	17800	17800;17849		71.708	71.708	1	543820			8237	2891	5524	5563	11212;11213	11212					0.05844328859757297
IYKPVTDFFL	10	Unmodified	_IYKPVTDFFL_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8419189453125	2	621.842082	1241.66961	0.1883	0.00011709	-0.24295	-0.00015108	-0.054652	-3.3985E-05	621.8419847965739	74.535	0.60413	74.584	74.424	75.028	0.048546					62	21	4	0	0	0	0.018369	2	17629	17629;17679		69.338	40.257	1	529350			8238	2891	5524	5563	11214;11215	11214					0.05844328859757297
IYKQRNLS	8	Unmodified	_IYKQRNLS_					0	0	0			REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF	REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2922058105469	2	511.293091	1020.57163	-0.53404	-0.00027305	-0.60271	-0.00030816	-1.1368	-0.00058121	511.29280045342705	41.469	1.14	41.469	41.225	42.365	0					130	40	5	0	0	0	0.41225	1	7706	7706		24.674	0.65332	1	611060	+		8239	11771	5525	5564	11216	11216					0.06216565054421608
IYKSRDEANN	10	Unmodified	_IYKSRDEANN_					0	0	0		nc|ENSG00000047936|P08922|ROS1;ENSG00000047936|ENST00000368507|ROS1	nc|ENSG00000047936|P08922|ROS1	nc|ENSG00000047936|P08922|ROS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7681884765625	2	605.296559	1208.57856	0.74896	0.00045334	4.4101	0.0026694	5.159	0.0031227	605.2985538725891	69.1	0.36295	69.1	68.828	69.191	0					16	13	2	0	0	0	0.31667	1	16091	16091		8.7454	1.4562	1	148640			8240	564	5526	5565	11217	11217					-0.0173816685564816
IYKTSILVF	9	Unmodified	_IYKTSILVF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7583618164062	2	542.326068	1082.63758	0.7846	0.00042551	0.68096	0.0003693	1.4656	0.00079481	542.3262738375363	66.616	0.81126	66.616	66.428	67.239	0					70	30	3	0	0	0	0.099539	1	15400	15400		45.7	22.963	1	646450			8241	2273	5527	5566	11218	11218					0.09956961176635559
IYKTSILVF	9	Unmodified	_IYKTSILVF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.75830078125	2	542.326068	1082.63758	0.74012	0.00040139	0.88565	0.00048031	1.6258	0.0008817	542.3263647592993	66.604	0.90376	66.669	66.474	67.378	0.065063					75	33	3	0	0	0	0.14884	1	15236	15236		29.841	10.584	1	682170			8242	2273	5527	5566	11219	11219					0.09956961176635559
IYLAEEPPF	9	Unmodified	_IYLAEEPPF_					0	0	0			REV__ENST00000514302.5_1_4:8609022-8621341:+|nuORF	REV__ENST00000514302.5_1_4:8609022-8621341:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8145751953125	2	539.776408	1077.53826	0.63117	0.00034069	-1.0879	-0.00058725	-0.45678	-0.00024656	539.7758597643316	92.338	0.44724	92.374	92.077	92.524	0.03653					22	15	2	0	0	0	0.19069	1	22982	22982		24.674	8.8267	1	67912	+		8243	8646	5528	5567	11220	11220					0.0025951849186185427
IYLDELQVI	9	Unmodified	_IYLDELQVI_					0	0	0		ENST00000473034.5_1_2:219533245-219536693:-|nuORF;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENSG00000163481|ENST00000295704|RNF25	ENST00000473034.5_1_2:219533245-219536693:-|nuORF	ENST00000473034.5_1_2:219533245-219536693:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8302612304688	2	553.310615	1104.60668	0.5717	0.00031633	0.59908	0.00033148	1.1708	0.0006478	553.310795003738	85.63	0.54521	85.63	85.482	86.027	0					56	24	3	0	0	0	0.15482	2	21164	21164;21204		23.79	11.549	1	368380			8244	3905	5529	5568	11221;11222	11221					0.05855763071713227
IYLDELQVI	9	Unmodified	_IYLDELQVI_					0	0	0		ENST00000473034.5_1_2:219533245-219536693:-|nuORF;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENSG00000163481|ENST00000295704|RNF25	ENST00000473034.5_1_2:219533245-219536693:-|nuORF	ENST00000473034.5_1_2:219533245-219536693:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8302612304688	2	553.310615	1104.60668	0.7657	0.00042367	0.40632	0.00022482	1.172	0.00064849	553.3107453189963	85.642	0.59328	85.667	85.441	86.035	0.025177					50	22	3	0	0	0	0.14444	1	20997	20997		24.991	11.085	1	366070			8245	3905	5529	5568	11223	11223					0.05855763071713227
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	ENST00000431099.3_1_9:160122-173274:-|nuORF	ENST00000431099.3_1_9:160122-173274:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.8027648925781	2	510.802426	1019.5903	0.33789	0.00017259	-0.070999	-3.6266E-05	0.26689	0.00013633	510.80257096698836	90.957	0.50258	90.957	90.734	91.237	0					44	17	3	0	0	0	1.7467E-05	2	22802	22802;22814		141.83	81.437	1	3688200			8246	2801	5530	5569	11224;11225	11224					0.08128681905623125
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	ENST00000431099.3_1_9:160122-173274:-|nuORF	ENST00000431099.3_1_9:160122-173274:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2897644042969	2	510.802426	1019.5903	0.10689	5.46E-05	0.15268	7.799E-05	0.25957	0.00013259	510.80265585792813	90.996	1.2094	91.031	90.729	91.938	0.035446					81	44	4	0	0	0	0.0012363	3	22651	22587;22636;22651		120.45	69.595	1	5075500			8247	2801	5530	5569	11226;11227;11228	11228					0.08128681905623125
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENST00000502341.5_1_5:141348723-141357950:+|nuORF;ENSG00000013561|ENST00000394520|RNF14	ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENST00000502341.5_1_5:141348723-141357950:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7791137695312	2	561.795132	1121.57571	0.5013	0.00028163	-0.61644	-0.00034631	-0.11514	-6.4687E-05	561.7946898946011	82.711	0.42339	82.711	82.534	82.957	0					27	14	3	0	0	0	0.25209	1	20310	20310		12.532	0.89125	1	246490			8248	449	5531	5570	11229	11229					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENST00000502341.5_1_5:141348723-141357950:+|nuORF;ENSG00000013561|ENST00000394520|RNF14	ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENST00000502341.5_1_5:141348723-141357950:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7791137695312	2	561.795132	1121.57571	0.38435	0.00021592	-0.48947	-0.00027498	-0.10512	-5.9058E-05	561.7947486317277	82.669	0.3993	82.691	82.504	82.904	0.021744					29	13	3	0	0	0	0.14718	1	20135	20135		24.674	1.5255	1	189960			8249	449	5531	5570	11230	11230					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENST00000502341.5_1_5:141348723-141357950:+|nuORF;ENSG00000013561|ENST00000394520|RNF14	ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENST00000502341.5_1_5:141348723-141357950:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7791748046875	2	561.795132	1121.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.964	1	82.985	82.485	83.485	0.021744								0	0	0	0.19992	1	20204	20204		18.135	6.4947	1				8250	449	5531	5570	11231	11231					0.019786097574751693
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8524169921875	2	560.85245	1119.69035	0.24417	0.00013694	-0.22513	-0.00012626	0.019044	1.0681E-05	560.8522232553523	49.349	1.2315	49.349	49.116	50.348	0					94	43	4	0	0	0	0.0016629	2	10126	10126;10200		117.84	44.87	1	990690			8251	4738	5532	5571	11232;11233	11232					0.13528919239411152
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8522338867188	2	560.85245	1119.69035	0.2444	0.00013707	-0.16062	-9.0086E-05	0.083772	4.6984E-05	560.8522843459027	49.262	0.82431	49.338	49.106	49.93	0.076603					74	29	4	0	0	0	0.0045688	2	9939	9939;9983		88.364	32.861	1	822720			8252	4738	5532	5571	11234;11235	11234					0.13528919239411152
IYLERFPIF	9	Unmodified	_IYLERFPIF_					0	0	0		ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3369750976562	2	599.336967	1196.65938	0.27457	0.00016456	-0.16548	-9.9176E-05	0.1091	6.5387E-05	599.3365822452291	78.698	0.70911	78.698	78.479	79.188	0					65	24	4	0	0	0	0.029591	2	19089	19089;19196		51.415	26.016	1	996210			8253	426	5533	5572	11236;11237	11236					0.0689176592518379
IYLERFPIF	9	Unmodified	_IYLERFPIF_					0	0	0		ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3369750976562	2	599.336967	1196.65938	0.3287	0.000197	-0.15114	-9.0587E-05	0.17755	0.00010641	599.336653180738	78.737	0.8607	78.767	78.505	79.366	0.030151					64	29	3	0	0	0	0.018465	1	18914	18914		59.368	33.969	1	900690			8254	426	5533	5572	11238	11238					0.0689176592518379
IYLESVAIL	9	Unmodified	_IYLESVAIL_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000105438|ENST00000330720|KDELR1;ENSG00000136240|ENST00000258739|KDELR2	ENSG00000100196|ENST00000216014|KDELR3;ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7845764160156	2	510.802426	1019.5903	0.67725	0.00034594	-0.57566	-0.00029405	0.10159	5.1893E-05	510.8023945996441	84.981	0.31396	84.981	84.818	85.132	0					15	10	2	0	0	0	0.21603	1	20981	20981		20.454	9.3392	1	81713			8255	2780;1167	5534	5573	11239	11239					0.08128681905623125
IYLFNWNGF	9	Unmodified	_IYLFNWNGF_					0	0	0		nc|ENSG00000120314|Q9H6Y2-2|WDR55;ENST00000506393.5_1_5:140048657-140049236:+|nuORF;WDR55|p.D380*|1|0.17|ENSG00000120314|chr5:140669636-140669637|TG/-|frameshift_variant;ENSG00000120314|ENST00000358337|WDR55	nc|ENSG00000120314|Q9H6Y2-2|WDR55	nc|ENSG00000120314|Q9H6Y2-2|WDR55	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.2896118164062	2	587.290017	1172.56548	0.78009	0.00045814	-1.5874	-0.00093227	-0.80731	-0.00047413	587.2892985025886	97.621	0.5202	97.621	97.461	97.981	0					38	24	2	0	0	0	0.021119	1	24841	24841		57.471	41.624	1	126220			8256	2116	5535	5574	11240	11240					-0.013899531771357942
IYLFWGIFP	9	Unmodified	_IYLFWGIFP_					0	0	0			REV__ENST00000473262.5_1_3:124802736-124896678:-|nuORF	REV__ENST00000473262.5_1_3:124802736-124896678:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3005981445312	2	578.315503	1154.61645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.697	1	77.732	77.232	78.232	0.034485								0	0	0	0.22377	1	18603	18603		14.582	3.7578	1		+		8257	12042	5536	5575	11241	11241					0.04532995867725731
IYLGISLINI	10	Unmodified	_IYLGISLINI_					0	0	0		tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1	tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1	tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8449096679688	2	559.844625	1117.6747	0.33461	0.00018733	0.55668	0.00031165	0.89129	0.00049898	559.8448186005985	78.696	0.50609	78.696	78.448	78.954	0					28	17	3	0	0	0	0.26541	1	19070	19070		26.268	0	1	269520			8258	13727	5537	5576	11242	11242					0.12056632722374161
IYLHDCIW	8	Unmodified	_IYLHDCIW_					0	0	0		ENST00000558286.5_1_15:51634073-51676155:+|nuORF	ENST00000558286.5_1_15:51634073-51676155:+|nuORF	ENST00000558286.5_1_15:51634073-51676155:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.75732421875	2	531.757495	1061.50044	0.20416	0.00010856	-0.10851	-5.77E-05	0.095651	5.0863E-05	531.7573863827668	50.978	0.65461	50.978	50.762	51.417	0					45	21	4	0	0	0	0.1928	1	10653	10653		42.968	16.627	1	469830			8259	7140	5538	5577	11243	11243					-0.0278527097461847
IYLHDCIW	8	Unmodified	_IYLHDCIW_					0	0	0		ENST00000558286.5_1_15:51634073-51676155:+|nuORF	ENST00000558286.5_1_15:51634073-51676155:+|nuORF	ENST00000558286.5_1_15:51634073-51676155:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7570190429688	2	531.757495	1061.50044	0.39563	0.00021038	-0.31434	-0.00016715	0.081297	4.323E-05	531.7572121467342	50.907	0.44402	50.977	50.792	51.236	0.069874					43	16	3	0	0	0	0.3056	1	10502	10502		34.187	14.748	1	402420			8260	7140	5538	5577	11244	11244					-0.0278527097461847
IYLIAYKI	8	Unmodified	_IYLIAYKI_					0	0	0			REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.8092346191406	2	498.810054	995.605554	0.4665	0.0002327	-2.2757	-0.0011352	-1.8092	-0.00090247	498.8088580890126	102.41	0.40862	102.46	102.26	102.67	0.040909					44	29	2	0	0	0	0.49441	1	26128	26128		13.508	4.1604	1	43171	+		8261	13286	5539	5578	11245	11245					0.10757593493462991
IYLIAYKI	8	Unmodified	_IYLIAYKI_					0	0	0			REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	498.810054	995.605554	0.32503	0.00016213	-2.4736	-0.0012338	-2.1486	-0.0010717	498.8087868055934	102.53	0.36782	102.53	102.35	102.72	0	0.036711	-9.1545E-05	NaN	13.508	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51404	+		8262	13286	5539	5578							0.10757593493462991
IYLINSWPF	9	Unmodified	_IYLINSWPF_					0	0	0		FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant;ENSG00000154803|ENST00000285071|FLCN;nc|ENSG00000154803|Q8NFG4-2|FLCN	FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant	FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.8084716796875	2	576.808042	1151.60153	0.57183	0.00032984	0.44511	0.00025674	1.0169	0.00058658	576.8083500514458	98.396	0.57951	98.396	98.087	98.667	0					55	30	3	0	0	0	0.0042692	2	25080	25038;25080		99.799	70.717	1	309460			8263	3566	5540	5579	11246;11247	11247					0.03179503999740518
IYLINSWPF	9	Unmodified	_IYLINSWPF_					0	0	0		FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant;ENSG00000154803|ENST00000285071|FLCN;nc|ENSG00000154803|Q8NFG4-2|FLCN	FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant	FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8084716796875	2	576.808042	1151.60153	0.58246	0.00033597	0.49959	0.00028817	1.0821	0.00062414	576.8084332902944	98.371	0.485	98.413	98.168	98.653	0.041931					41	24	4	0	0	0	0.0044564	1	24883	24883		92.653	58.551	1	255640			8264	3566	5540	5579	11248	11248					0.03179503999740518
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8179931640625	2	573.818941	1145.62333	0.73877	0.00042392	-0.51556	-0.00029584	0.2232	0.00012808	573.818622567135	66.593	1.0331	66.593	66.364	67.397	0					111	40	4	0	0	0	1.3047E-05	2	15346	15346;15390		146.01	102.15	1	1045400			8265	3130	5541	5580	11249;11250	11249					0.05634308748312833
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8192138671875	2	573.818941	1145.62333	0.64582	0.00037059	-0.73226	-0.00042019	-0.086438	-4.96E-05	573.8185765316658	66.61	1.1947	66.675	66.308	67.502	0.065071					91	43	3	0	0	0	0.0030029	2	15192	15192;15231		109.63	56.275	1	896900			8266	3130	5541	5580	11251;11252	11251					0.05634308748312833
IYLNDQNLCI	10	Unmodified	_IYLNDQNLCI_					0	0	0		ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.30419921875	2	604.802631	1207.59071	0.46668	0.00028225	-1.5114	-0.0009141	-1.0447	-0.00063185	604.8016970735754	87.172	0.43076	87.172	87.024	87.455	0					30	16	2	0	0	0	0.29844	1	21640	21640		22.736	1.1993	1	304170			8267	5719	5542	5581	11253	11253					-0.004782664368121914
IYLNEFERE	9	Unmodified	_IYLNEFERE_					0	0	0			REV__WDR37|p.Q64E|1|0.25|ENSG00000047056|chr10:1077958-1077958|C/G|missense_variant	REV__WDR37|p.Q64E|1|0.25|ENSG00000047056|chr10:1077958-1077958|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8093872070312	2	606.798403	1211.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.366	1	93.403	92.903	93.903	0.037369								0	0	0	0.27427	1	23368	23368		4.3292	0.73274	1		+		8268	8038	5543	5582	11254	11254					-0.015074970818204747
IYLNITNTL	9	Unmodified	_IYLNITNTL_					0	0	0		ENST00000420833.5_1_7:12258097-12270062:+|nuORF;ENSG00000106460|ENST00000396668|TMEM106B	ENST00000420833.5_1_7:12258097-12270062:+|nuORF	ENST00000420833.5_1_7:12258097-12270062:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8031616210938	2	532.802957	1063.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.128	1	77.162	76.662	77.662	0.034485								0	0	0	0.16903	1	18429	18429		22.736	3.4793	1				8269	1523	5544	5583	11255	11255					0.062108962745242025
IYLNNIIPRF	10	Unmodified	_IYLNNIIPRF_					0	0	0		nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENSG00000266028|ENST00000573034|SRGAP2	nc|ENSG00000196369|P0DMP2|SRGAP2B	nc|ENSG00000196369|P0DMP2|SRGAP2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.866455078125	2	631.866423	1261.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.206	1	77.24	76.74	77.74	0.034485								0	0	0	0.047685	1	18453	18453		53.833	38.995	1				8270	4472	5545	5584	11256	11256					0.09790242219492029
IYLPIANVARI	11	Unmodified	_IYLPIANVARI_					0	0	0		ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.29345703125	2	621.882073	1241.74959	0.1288	8.0095E-05	-0.10244	-6.3703E-05	0.02636	1.6393E-05	621.8818893112474	74.933	0.26842	74.933	74.743	75.011	0					13	9	2	0	0	0	0.3095	1	17888	17888		13.042	2.2185	1	114460			8271	2136	5546	5585	11257	11257					0.13838815253598113
IYLPIANVARI	11	Unmodified	_IYLPIANVARI_					0	0	0		ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2959594726562	2	621.882073	1241.74959	0.16202	0.00010076	0.28855	0.00017945	0.45057	0.0002802	621.882148352131	74.911	0.27247	74.955	74.784	75.056	0.044037					15	9	2	0	0	0	0.30979	1	17773	17773		11.495	6.5977	1	132830			8272	2136	5546	5585	11258	11258					0.13838815253598113
IYLPQNQNF	9	Unmodified	_IYLPQNQNF_					0	0	0		ENST00000487874.1_1_1:35476098-35476426:-|nuORF	ENST00000487874.1_1_1:35476098-35476426:-|nuORF	ENST00000487874.1_1_1:35476098-35476426:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8394165039062	2	568.790381	1135.56621	0.36705	0.00020878	3.3887	0.0019275	3.7558	0.0021362	569.2941218558709	74.667	0.32203	74.667	74.501	74.823	0					18	11	2	0	0	0	0.21515	1	17809	17809		19.439	5.9311	1	78862			8273	6794	5547	5586	11259	11259					0.003848414719413995
IYLPYLHEW	9	Unmodified	_IYLPYLHEW_					0	0	0		ENSG00000074319|ENST00000251968|TSG101;ENST00000545247.6_1_11:18505612-18548363:-|nuORF;ENST00000543087.5_1_11:18512432-18536353:-|nuORF	ENSG00000074319|ENST00000251968|TSG101	ENSG00000074319|ENST00000251968|TSG101	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.3185424804688	2	617.318774	1232.623	-0.096898	-5.9817E-05	-0.28637	-0.00017678	-0.38327	-0.0002366	617.3185564301506	75.507	0.53853	75.507	75.174	75.713	0					58	21	4	0	0	0	0.0076571	2	18093	18069;18093		74.423	58.274	1	930940			8274	804	5548	5587	11260;11261	11261					0.015988890284461377
IYLPYLHEW	9	Unmodified	_IYLPYLHEW_					0	0	0		ENSG00000074319|ENST00000251968|TSG101;ENST00000545247.6_1_11:18505612-18548363:-|nuORF;ENST00000543087.5_1_11:18512432-18536353:-|nuORF	ENSG00000074319|ENST00000251968|TSG101	ENSG00000074319|ENST00000251968|TSG101	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.3184814453125	2	617.318774	1232.623	-0.065419	-4.0385E-05	-0.25158	-0.00015531	-0.317	-0.00019569	617.3186493460929	75.459	0.56236	75.503	75.19	75.752	0.044037					49	21	4	0	0	0	0.021119	4	17921	17891;17921;17930;17943		57.471	41.322	1	755450			8275	804	5548	5587	11262;11263;11264;11265	11263					0.015988890284461377
IYLPYLQNW	9	Unmodified	_IYLPYLQNW_					0	0	0		ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.3180541992188	2	605.318774	1208.623	0.69369	0.00041991	-0.34575	-0.00020929	0.34794	0.00021062	605.3183714234029	91.456	0.81876	91.456	91.269	92.088	0					75	30	4	0	0	0	0.0037915	3	22919	22919;23025;23086		104.8	79.4	1	1333300			8276	3447	5549	5588	11266;11267;11268	11266					0.02702889028455502
IYLPYLQNW	9	Unmodified	_IYLPYLQNW_					0	0	0		ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3187866210938	2	605.318774	1208.623	0.60173	0.00036424	-0.14444	-8.7434E-05	0.45729	0.00027681	605.3184946411682	91.434	0.90214	91.47	91.225	92.127	0.035446					82	32	4	0	0	0	0.00052627	1	22756	22756		131.3	91.34	1	921660			8277	3447	5549	5588	11269	11269					0.02702889028455502
IYLRDPVQV	9	Unmodified	_IYLRDPVQV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.27978515625	2	551.816399	1101.61824	0.52064	0.00028729	0.29161	0.00016091	0.81224	0.00044821	551.8164033304369	55.828	0.37088	55.828	55.608	55.979	0					23	12	3	0	0	0	0.20294	1	12064	12064		24.991	3.454	1	193270			8278	2699	5550	5589	11270	11270					0.07150004885693306
IYLREPLAA	9	Unmodified	_IYLREPLAA_					0	0	0			REV__nc|ENSG00000211452|P49895-2|DIO1	REV__nc|ENSG00000211452|P49895-2|DIO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037109375	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.201	1	81.224	80.724	81.724	0.023041								0	0	0	0.25692	1	19666	19666		7.9102	0.62092	1		+		8279	10987	5551	5590	11271	11271					0.07626619856978323
IYLREPLAA	9	Unmodified	_IYLREPLAA_					0	0	0			REV__nc|ENSG00000211452|P49895-2|DIO1	REV__nc|ENSG00000211452|P49895-2|DIO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.303466796875	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.368	1	81.39	80.89	81.89	0.021866								0	0	0	0.23452	1	19717	19717		12.532	1.7076	1		+		8280	10987	5551	5590	11272	11272					0.07626619856978323
IYLRQRWM	8	Unmodified	_IYLRQRWM_					0	0	0		ENSG00000094755|ENST00000265294|GABRP	ENSG00000094755|ENST00000265294|GABRP	ENSG00000094755|ENST00000265294|GABRP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3170776367188	2	583.318586	1164.62262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.703	1	97.744	97.244	98.244	0.040855								0	0	0	0.38822	1	24693	24693		10.183	1.5901	1				8281	1087	5552	5591	11273	11273					0.046891908275938476
IYLSKSLIF	9	Unmodified	_IYLSKSLIF_					0	0	0		ENST00000370068.5_1_1:107683518-107690770:+|nuORF	ENST00000370068.5_1_1:107683518-107690770:+|nuORF	ENST00000370068.5_1_1:107683518-107690770:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.3250732421875	2	542.326068	1082.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.953	1	99.953	99.453	100.45	0								0	0	0	0.19992	1	25531	25531		18.135	1.1927	1				8282	6201	5553	5592	11274	11274					0.09956961176612822
IYLTFPVAM	9	Oxidation (M)	_IYLTFPVAM(Oxidation (M))_		IYLTFPVAM(1)		IYLTFPVAM(140)	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7835083007812	2	535.783179	1069.5518	0.88841	0.00047599	0.084018	4.5015E-05	0.97243	0.00052101	535.7830575873144	80.535	1.4616	80.535	79.711	81.173	0					99	50	4	0	0	0	0.00014496	1	19627	19627		137.59	112.91	1	881160			8283	5614	5554	5593	11275	11275		317			0.019810529994401804
IYLTFPVAM	9	Oxidation (M)	_IYLTFPVAM(Oxidation (M))_		IYLTFPVAM(1)		IYLTFPVAM(140)	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7835083007812	2	535.783179	1069.5518	0.93527	0.0005011	-0.30735	-0.00016467	0.62793	0.00033643	535.7829120214243	80.55	0.75003	80.573	80.273	81.023	0.023613					85	26	4	0	0	0	0.00014496	1	19464	19464		137.59	109.1	1	1214700			8284	5614	5554	5593	11276	11276		317			0.019810529994401804
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(160)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.317626953125	2	609.317386	1216.62022	0.40512	0.00024685	0.21394	0.00013036	0.61906	0.00037721	609.3174396115287	94.813	0.93993	94.813	94.527	95.467	0					130	38	5	0	0	0	7.7241E-11	4	23963	23919;23963;24004;24052		162.95	132.73	1	3198300			8285	5614	5555	5594	11277;11278;11279;11280	11278		317			0.02057297579290207
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(160)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.318115234375	2	609.317386	1216.62022	0.51692	0.00031497	0.67751	0.00041282	1.1944	0.00072779	609.3177133488955	96.718	1.2516	96.718	96.187	97.438	0					210	59	5	0	0	0	7.7241E-11	7	24520	24472;24520;24563;24606;24645;24686;24733		162.95	132.73	1	2338900			8286	5614	5555	5594	11281;11282;11283;11284;11285;11286;11287	11282		317			0.02057297579290207
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(55)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.3175048828125	2	609.317386	1216.62022	0.66416	0.00040468	-0.38554	-0.00023491	0.27862	0.00016977	609.3170385201394	97.484	0.95195	97.484	97.461	98.413	0					94	48	2	0	0	0	0.060429	3	24832	24785;24832;24877		54.774	48.05	1	325810			8287	5614	5555	5594	11288;11289;11290	11289		317			0.02057297579290207
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(160)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3177490234375	2	609.317386	1216.62022	0.42945	0.00026167	0.1505	9.1702E-05	0.57995	0.00035337	609.3174420390118	94.758	0.93227	94.796	94.544	95.476	0.038094					133	38	5	0	0	0	7.7241E-11	4	23803	23760;23803;23844;23888		162.95	132.73	1	2943000			8288	5614	5555	5594	11291;11292;11293;11294	11292		317			0.02057297579290207
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(160)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3177490234375	2	609.317386	1216.62022	0.63745	0.00038841	0.44927	0.00027375	1.0867	0.00066216	609.3175762910854	96.661	2.0059	96.701	96.293	98.299	0.039772					311	103	5	0	0	0	7.7241E-11	9	24391	24308;24351;24391;24432;24474;24521;24561;24611;24683		162.95	132.73	1	3109400			8289	5614	5555	5594	11295;11296;11297;11298;11299;11300;11301;11302;11303	11297		317			0.02057297579290207
IYLTFPVAMF	10	Unmodified	_IYLTFPVAMF_					0	0	0		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.31982421875	2	601.319928	1200.6253	0.19794	0.00011903	0.4946	0.00029741	0.69254	0.00041644	601.3199638242072	104.93	0.38454	104.93	104.74	105.13	0					118	37	4	0	0	0	0.00078581	4	27006	26975;27006;27042;27047		92.822	74.687	1	529230			8290	5614	5555	5595	11304;11305;11306;11307	11305					0.033016014419217754
IYLTFPVAMF	10	Unmodified	_IYLTFPVAMF_					0	0	0		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3198852539062	2	601.319928	1200.6253	0.16831	0.00010121	0.4508	0.00027108	0.61911	0.00037228	601.3201410323012	105.17	0.34106	105.17	105.13	105.47	0					55	35	2	0	0	0	0.27354	2	27090	27090;27156		25.399	18.676	1	96888			8291	5614	5555	5595	11308;11309	11308					0.033016014419217754
IYLTFPVAMF	10	Unmodified	_IYLTFPVAMF_					0	0	0		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.319580078125	2	601.319928	1200.6253	0.44052	0.00026489	0.14507	8.7235E-05	0.58559	0.00035213	601.3198220449165	104.86	0.63173	104.9	104.75	105.38	0.034004					132	67	3	0	0	0	1.2298E-05	6	26822	26787;26792;26822;26858;26893;26905		133.7	89.295	1	599350			8292	5614	5555	5595	11310;11311;11312;11313;11314;11315	11312					0.033016014419217754
IYLTNTFSF	9	Unmodified	_IYLTNTFSF_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8301391601562	2	553.281857	1104.54916	0.55201	0.00030542	-1.3927	-0.00077058	-0.84073	-0.00046516	553.2817412548108	82.846	0.48373	82.846	82.595	83.079	0					24	16	2	0	0	0	0.0084898	1	20311	20311		67.838	39.351	1	109870			8293	825	5556	5596	11316	11316					0.001069208661419907
IYLTNTFSF	9	Unmodified	_IYLTNTFSF_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8300170898438	2	553.281857	1104.54916	0.49556	0.00027418	-1.2502	-0.00069173	-0.75467	-0.00041755	553.2818963404741	82.849	0.45361	82.871	82.589	83.043	0.021744					31	15	3	0	0	0	0.15403	1	20136	20136		34.402	19.563	1	144940			8294	825	5556	5596	11317	11317					0.001069208661419907
IYLTTPYSW	9	Unmodified	_IYLTTPYSW_					0	0	0		L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|16|1|anti-sense	L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|16|1|anti-sense	L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|16|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.775390625	2	572.289682	1142.56481	0.50442	0.00028867	3.4617	0.0019811	3.9662	0.0022698	572.7937466777753	55.279	0.64022	55.279	54.827	55.467	0					34	23	3	0	0	0	0.16036	1	11973	11973		23.148	3.7094	1	73745			8295	7386	5557	5597	11318	11318					-0.0007679261680095806
IYLVSIPEL	9	Unmodified	_IYLVSIPEL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.8106079101562	2	523.810251	1045.60595	0.28274	0.0001481	0.54242	0.00028413	0.82516	0.00043223	523.8103122205919	90.672	0.50104	90.672	90.439	90.94	0					42	18	3	0	0	0	0.024893	1	22687	22687		54.774	12.679	1	314050			8296	5021	5558	5598	11319	11319					0.08496968422650752
IYLVSIPEL	9	Unmodified	_IYLVSIPEL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.8106079101562	2	523.810251	1045.60595	-0.082084	-4.2996E-05	0.60044	0.00031452	0.51836	0.00027152	523.8103722775902	90.663	0.51605	90.698	90.45	90.966	0.035446					49	20	3	0	0	0	0.037705	1	22515	22515		46.021	11.919	1	351870			8297	5021	5558	5598	11320	11320					0.08496968422650752
IYLYTWSW	8	Unmodified	_IYLYTWSW_					0	0	0		ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2977905273438	2	566.279118	1130.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.9	1	81.9	81.4	82.4	0								0	0	0	0.38796	1	20041	20041		14.582	2.0501	1				8298	3241	5559	5599	11321	11321					-0.01636757925666643
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(160)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.281494140625	2	573.281	1144.54745	0.62705	0.00035947	-0.055468	-3.1799E-05	0.57158	0.00032768	573.2809642477612	81.991	1.8783	81.991	81.434	83.312	0					176	65	4	0	0	0	8.9867E-09	3	20096	20047;20096;20157		160.52	92.435	1	1450300			8299	4100	5560	5600	11322;11323;11324	11323		249			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(160)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.280517578125	2	573.281	1144.54745	0.71524	0.00041003	-1.1363	-0.00065144	-0.42109	-0.0002414	573.2802779180947	79.969	0.83982	79.969	79.59	80.43	0					75	28	4	0	0	0	1.2442E-11	1	19437	19437		158.2	80.053	1	1441300			8300	4100	5560	5600	11325	11325		249			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(44)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.281494140625	2	573.281	1144.54745	0.46264	0.00026522	-0.81621	-0.00046792	-0.35357	-0.00020269	573.2804457084276	79.954	0.86443	79.98	79.599	80.464	0.026436					88	30	4	0	0	0	0.047633	1	19365	19365		43.858	18.459	1	1281300			8301	4100	5560	5600	11326	11326		249			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(130)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2810668945312	2	573.281	1144.54745	0.33467	0.00019186	0.34186	0.00019598	0.67652	0.00038784	573.281078583774	81.988	1.6186	82.01	81.449	83.068	0.021866					157	58	4	0	0	0	0.0005281	4	19891	19845;19891;19941;19982		131.27	63.187	1	1552200			8302	4100	5560	5600	11327;11328;11329;11330	11328		249			-0.019044562141289134
IYMDTLNIF	9	Unmodified	_IYMDTLNIF_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.283935546875	2	565.283543	1128.55253	0.14523	8.2096E-05	0.011139	6.2967E-06	0.15637	8.8393E-05	565.2835058429426	90.057	0.43896	90.057	89.716	90.155	0					35	17	3	0	0	0	0.0014903	1	22484	22484		118.89	50.814	1	534640			8303	4100	5560	5601	11331	11331					-0.0066015235152008245
IYMDTLNIF	9	Unmodified	_IYMDTLNIF_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2835083007812	2	565.283543	1128.55253	0.082164	4.6446E-05	0.4325	0.00024448	0.51466	0.00029093	565.2837339806601	89.919	0.56683	89.953	89.673	90.24	0.034065					31	22	2	0	0	0	0.0010793	1	22321	22321		122.18	72.246	1	657770			8304	4100	5560	5601	11332	11332					-0.0066015235152008245
IYMRQEGF	8	Unmodified	_IYMRQEGF_					0	0	0		ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2528076171875	2	522.252577	1042.4906	0.29833	0.0001558	0.68674	0.00035865	0.98507	0.00051445	522.2528281091969	90.687	0.58832	90.687	90.413	91.001	0					50	21	3	0	0	0	0.51202	1	22743	22743		11.114	1.767	1	459340			8305	370	5561	5602	11333	11333					-0.028944589799721143
IYMVLFLLF	9	Unmodified	_IYMVLFLLF_					0	0	0			REV__tr|U7T022|U7T022_FUSNUPrepilintypeIVendopeptidasepeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00779PE=3SV=1	REV__tr|U7T022|U7T022_FUSNUPrepilintypeIVendopeptidasepeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00779PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.2361450195312	2	579.835214	1157.65588	0.15287	8.864E-05	3.0715	0.001781	3.2244	0.0018696	579.8371686276139	90.463	0.48109	90.497	90.263	90.744	0.034065					29	19	2	0	0	0	0.237	1	22461	22461		14.582	2.9414	1	76169	+		8306	13243	5562	5603	11334	11334					0.08335379826962708
IYNAAVWYY	9	Unmodified	_IYNAAVWYY_					0	0	0		ENST00000524795.5_1_15:66587446-66615029:+|nuORF;ENST00000565281.5_1_15:66585934-66615040:+|nuORF;nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF;nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L	ENST00000524795.5_1_15:66587446-66615029:+|nuORF	ENST00000524795.5_1_15:66587446-66615029:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2581176757812	2	581.782025	1161.5495	0.95095	0.00055325	-2.0324	-0.0011824	-1.0815	-0.00062919	581.7807773469718	80.727	0.50178	80.727	80.43	80.931	0					28	17	2	0	0	0	0.24263	1	19650	19650		12.532	0.29089	1	82327			8307	4190	5563	5604	11335	11335					-0.024816594140247616
IYNATVYENSA	11	Unmodified	_IYNATVYENSA_					0	0	0		FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3	FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3172607421875	2	622.793318	1243.57208	0.49793	0.00031011	-3.7578	-0.0023403	-3.2599	-0.0020302	622.7919115313589	80.368	0.37999	80.392	80.299	80.679	0.023605					18	13	2	0	0	0	0.31013	1	19502	19502		8.7454	3.9894	1	112700			8308	4077	5564	5605	11336	11336					-0.039961048070381366
IYNDTKFIY	9	Unmodified	_IYNDTKFIY_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8023681640625	2	588.800414	1175.58628	0.52705	0.00031033	0.28503	0.00016783	0.81208	0.00047815	588.8005993712063	57.78	1.2844	57.848	57.577	58.861	0.068375					131	46	5	0	0	0	0.22344	1	12847	12847		15.847	0	1	4182800			8309	841	5565	5606	11337	11337					0.005505924119233896
IYNETITDLL	10	Unmodified	_IYNETITDLL_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8165283203125	2	597.816261	1193.61797	0.6821	0.00040777	-0.51053	-0.0003052	0.17157	0.00010256	597.8159883421729	81.794	0.46314	81.794	81.573	82.036	0					24	15	2	0	0	0	0.06541	2	20021	20021;20034		53.404	13.454	1	136810			8310	2938	5566	5607	11338;11339	11338					0.02890540375187811
IYNETITDLL	10	Unmodified	_IYNETITDLL_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8167114257812	2	597.816261	1193.61797	0.28133	0.00016818	0.20144	0.00012043	0.48277	0.00028861	597.8163305240292	81.786	0.37311	81.808	81.645	82.018	0.021866					27	12	3	0	0	0	0.058752	1	19856	19856		55.235	22.449	1	153860			8311	2938	5566	5607	11340	11340					0.02890540375187811
IYNGETLVF	9	Unmodified	_IYNGETLVF_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2742309570312	2	528.274032	1054.53351	-0.0034106	-1.8018E-06	0.5927	0.00031311	0.58929	0.00031131	528.2742206854724	72.719	0.55582	72.719	72.528	73.084	0					45	19	3	0	0	0	0.11557	1	17244	17244		41.84	9.5341	1	274820			8312	1936	5567	5608	11341	11341					0.008426343491009902
IYNGETLVF	9	Unmodified	_IYNGETLVF_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.813720703125	2	528.274032	1054.53351	0.11939	6.3068E-05	0.40243	0.00021259	0.52181	0.00027566	528.2741290416733	72.693	0.58302	72.749	72.514	73.097	0.055939					37	19	3	0	0	0	0.18759	1	17089	17089		27.629	8.1898	1	321030			8313	1936	5567	5608	11342	11342					0.008426343491009902
IYNGFSSVLQF	11	Unmodified	_IYNGFSSVLQF_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;ENST00000477464.1_1_10:71921354-71921671:-|nuORF	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.8243408203125	2	637.824421	1273.63429	0.31305	0.00019967	0.26817	0.00017104	0.58121	0.00037071	637.8245755975591	87.612	0.48038	87.612	87.433	87.914	0					37	17	3	0	0	0	0.010702	2	21821	21775;21821		93.448	35.726	1	248410			8314	881	5568	5609	11343;11344	11344					0.008416663319394502
IYNGFSSVLQF	11	Unmodified	_IYNGFSSVLQF_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;ENST00000477464.1_1_10:71921354-71921671:-|nuORF	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.8246459960938	2	637.824421	1273.63429	0.18911	0.00012062	0.048099	3.0679E-05	0.23721	0.0001513	637.8243982154197	87.595	0.44946	87.625	87.402	87.851	0.030037					35	16	3	0	0	0	0.22106	1	21580	21580		27.088	8.7153	1	262610			8315	881	5568	5609	11345	11345					0.008416663319394502
IYNGIASPII	10	Unmodified	_IYNGIASPII_					0	0	0			REV__ENSG00000128519|ENST00000249284|TAS2R16	REV__ENSG00000128519|ENST00000249284|TAS2R16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.792724609375	2	530.8055	1059.59645	0.29361	0.00015585	-0.18907	-0.00010036	0.10455	5.5495E-05	530.8054243201414	58.232	0.40918	58.302	58.184	58.593	0.070477					20	14	2	0	0	0	0.38912	1	12676	12676		13.042	1.5478	1	97509	+		8316	9017	5569	5610	11346	11346					0.0690320013713972
IYNGKLFDLL	10	Unmodified	_IYNGKLFDLL_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3396606445312	2	598.339707	1194.66486	0.33579	0.00020092	-0.12975	-7.7636E-05	0.20604	0.00012328	598.3395570936754	76.115	1.297	76.115	75.878	77.175	0					195	61	4	0	0	0	3.3074E-12	7	18270	18229;18270;18311;18356;18455;18510;18568		176.43	90.785	1	15485000			8317	3126	5570	5611	11347;11348;11349;11350;11351;11352;11353	11348					0.0753144471698306
IYNGKLFDLL	10	Unmodified	_IYNGKLFDLL_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.340087890625	2	598.339707	1194.66486	0.28122	0.00016827	0.064241	3.8438E-05	0.34546	0.0002067	598.3397052101351	76.053	1.299	76.092	75.908	77.207	0.03923					177	58	4	0	0	0	3.3074E-12	7	18102	18061;18102;18148;18208;18255;18301;18353		176.43	90.785	1	17133000			8318	3126	5570	5611	11354;11355;11356;11357;11358;11359;11360	11355					0.0753144471698306
IYNGKLFDLL	10	Unmodified	_IYNGKLFDLL_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3408203125	2	598.339707	1194.66486	0.35236	0.00021083	-0.085862	-5.1375E-05	0.2665	0.00015946	598.8410561870417	77.435	0.72481	77.47	77.417	78.142	0.034485					38	24	2	0	0	0	0.42901	1	18714	18714		8.7454	0.15213	1	136600			8319	3126	5570	5611	11361	11361					0.0753144471698306
IYNGQLFNNL	10	Unmodified	_IYNGQLFNNL_					0	0	0		nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-2|TTC8	nc|ENSG00000165533|Q8TAM2-2|TTC8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.822265625	2	598.308938	1194.60332	-0.046696	-2.7939E-05	0.54811	0.00032794	0.50141	0.0003	598.3093321750521	72.512	0.48744	72.512	72.287	72.775	0					35	16	3	0	0	0	0.31532	1	17215	17215		13.042	2.2185	1	277500			8320	4090	5571	5612	11362	11362					0.013805130177161118
IYNGQLFNNL	10	Unmodified	_IYNGQLFNNL_					0	0	0		nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-2|TTC8	nc|ENSG00000165533|Q8TAM2-2|TTC8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	598.308938	1194.60332	0.052114	3.1181E-05	0.4065	0.00024321	0.45861	0.00027439	598.3093112410224	72.374	0.40131	72.43	72.321	72.722	0.055931	-0.041076	-0.00010634	NaN	17.113	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168640			8321	4090	5571	5612							0.013805130177161118
IYNKVTPTF	9	Unmodified	_IYNKVTPTF_					0	0	0		ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2510986328125	2	541.797675	1081.5808	0.46264	0.00025066	-0.90256	-0.000489	-0.43992	-0.00023835	541.797103387628	47.362	0.5068	47.362	47.2	47.707	0					26	16	2	0	0	0	0.25052	1	9537	9537		8.7454	0	1	60953			8322	4129	5572	5613	11363	11363					0.04326913620070627
IYNKVTPTF	9	Unmodified	_IYNKVTPTF_					0	0	0		ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.757568359375	2	541.797675	1081.5808	0.53503	0.00028988	-1.2755	-0.00069104	-0.74042	-0.00040116	541.797051721326	64.232	0.58087	64.303	64.143	64.724	0.071014					33	20	3	0	0	0	0.14331	1	14492	14492		36.127	0	1	168330			8323	4129	5572	5613	11364	11364					0.04326913620070627
IYNKVTPTF	9	Unmodified	_IYNKVTPTF_					0	0	0		ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.251708984375	2	541.797675	1081.5808	0.50788	0.00027517	-0.49492	-0.00026815	0.012958	7.0209E-06	541.797364642139	47.278	0.27031	47.361	47.219	47.489	0.083096					17	9	2	0	0	0	0.2418	1	9364	9364		13.906	0	1	61537			8324	4129	5572	5613	11365	11365					0.04326913620070627
IYNKYWPLF	9	Unmodified	_IYNKYWPLF_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3290405273438	2	622.329142	1242.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.93	1	75.93	75.43	76.43	0								0	0	0	0.013252	1	18218	18218		74.423	50.402	1				8325	1421	5573	5614	11366	11366					0.03211479408105333
IYNKYWPLF	9	Unmodified	_IYNKYWPLF_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3291015625	2	622.329142	1242.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.853	1	75.897	75.397	76.397	0.044037								0	0	0	0.0031215	1	18039	18039		100.37	79.918	1				8326	1421	5573	5614	11367	11367					0.03211479408105333
IYNNIKNFVRF	11	Unmodified	_IYNNIKNFVRF_					0	0	0		PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;ENST00000510774.1_1_3:130699433-130714956:+|nuORF;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	PSMD1-ATP2C1|1|fusion;nc|ENSG00000017260|P98194-2|ATP2C1	PSMD1-ATP2C1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.59814453125	3	476.597983	1426.77212	-0.073161	-3.4868E-05	0.31809	0.0001516	0.24493	0.00011673	476.5980443725167	58.326	0.5433	58.396	58.205	58.749	0.070477					38	18	4	0	0	0	0.38806	1	12741	12741		7.0371	1.6344	1	210970			8327	7677;464	5574	5615	11368	11368					0.07580414651192768
IYNNIKNFVRF	11	Unmodified	_IYNNIKNFVRF_					0	0	0		PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;ENST00000510774.1_1_3:130699433-130714956:+|nuORF;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	PSMD1-ATP2C1|1|fusion;nc|ENSG00000017260|P98194-2|ATP2C1	PSMD1-ATP2C1|1|fusion	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	476.597983	1426.77212	-0.26109	-0.00012443	0.36845	0.0001756	0.10736	5.1168E-05	476.5980861154468	58.457	0.38865	58.457	58.263	58.652	0	0.030161	2.8757E-05	NaN	7.0371	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128430			8328	7677;464	5574	5615							0.07580414651192768
IYNNWLFDE	9	Unmodified	_IYNNWLFDE_					0	0	0			REV__ENSG00000146530|ENST00000275358|VWDE	REV__ENSG00000146530|ENST00000275358|VWDE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.1876220703125	3	405.188989	1212.54514	0.33886	0.0001373	-2.4188	-0.00098005	-2.0799	-0.00084275	405.1877542430064	98.663	0.4925	98.705	98.462	98.955	0.041939					40	27	2	0	0	0	0.29334	1	24961	24961		7.609	0.50723	1	164390	+		8329	9546	5575	5616	11369	11369					-0.052631686275390166
IYNPPFGYL	9	Unmodified	_IYNPPFGYL_					0	0	0			REV__tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	REV__tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7911376953125	2	542.279118	1082.54368	0.37779	0.00020487	0.62844	0.00034079	1.0062	0.00054565	542.279375170286	79.54	0.80285	79.567	79.388	80.191	0.026428					83	28	4	0	0	0	0.14718	1	19298	19298		24.674	0	1	2923700	+		8330	13152	5576	5617	11370	11370					0.005712420743293478
IYNPTTGEF	9	Unmodified	_IYNPTTGEF_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2482299804688	2	521.248015	1040.48148	0.14252	7.4289E-05	-0.30182	-0.00015732	-0.1593	-8.3033E-05	521.2479101642311	58.946	0.76805	59.016	58.721	59.489	0.070477					44	29	2	0	0	0	0.0043658	1	12879	12879		96.111	52.253	1	357890			8331	749	5577	5618	11371	11371					-0.03714529064677663
IYNPTTGEF	9	Unmodified	_IYNPTTGEF_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	521.248015	1040.48148	-0.0072058	-3.756E-06	-0.15234	-7.9405E-05	-0.15954	-8.3161E-05	521.2478671853348	58.935	0.71903	58.935	58.734	59.453	0	-0.040462	7.7123E-05	NaN	96.111	48	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496000			8332	749	5577	5618							-0.03714529064677663
IYNPTTGEFL	10	Unmodified	_IYNPTTGEFL_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7542724609375	2	577.790047	1153.56554	0.47412	0.00027394	-0.046741	-2.7007E-05	0.42738	0.00024694	577.7900856690211	71.147	0.44917	71.147	70.937	71.386	0					48	14	4	0	0	0	0.30896	1	16822	16822		18.146	3.3081	1	244720			8333	749	5578	5619	11372	11372					-0.0050999796776523
IYNPTTGEFL	10	Unmodified	_IYNPTTGEFL_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7906494140625	2	577.790047	1153.56554	0.5749	0.00033217	-0.3427	-0.00019801	0.23219	0.00013416	577.7896850360808	71.022	0.77441	71.08	70.933	71.707	0.058578					36	27	2	0	0	0	0.28626	1	16596	16596		28.495	7.6233	1	215160			8334	749	5578	5619	11373	11373					-0.0050999796776523
IYNQEDIF	8	Unmodified	_IYNQEDIF_					0	0	0			REV__ENST00000464717.5_1_7:154739579-154754102:-|nuORF	REV__ENST00000464717.5_1_7:154739579-154754102:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7312622070312	2	521.248015	1040.48148	0.12864	6.7053E-05	4.4118	0.0022996	4.5404	0.0023667	521.2484679654387	71.749	0.5775	71.805	71.54	72.117	0.055939					50	20	4	0	0	0	0.33807	1	16796	16796		28.487	2.2187	1	239080	+		8335	9772	5579	5620	11374	11374					-0.03714529064677663
IYNQVFLLL	9	Unmodified	_IYNQVFLLL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3160400390625	2	561.831517	1121.64848	0.44624	0.00025071	-0.021038	-1.182E-05	0.4252	0.00023889	561.8314334848565	96.692	0.2812	96.692	96.486	96.768	0					27	11	3	0	0	0	0.20004	1	24550	24550		23.148	6.2061	1	226950			8336	5752	5580	5621	11375	11375					0.09252363550899645
IYNQVFLLL	9	Unmodified	_IYNQVFLLL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8319091796875	2	561.831517	1121.64848	0.51397	0.00028877	-0.010548	-5.926E-06	0.50343	0.00028284	561.8314590000715	96.658	0.3295	96.698	96.472	96.802	0.039772					32	16	3	0	0	0	0.092418	1	24361	24361		34.102	12.356	1	264280			8337	5752	5580	5621	11376	11376					0.09252363550899645
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3036499023438	2	531.303124	1060.5917	0.64708	0.0003438	-0.055715	-2.9601E-05	0.59137	0.0003142	531.3030510391668	67.074	0.55774	67.074	66.871	67.428	0					30	20	2	0	0	0	0.05573	1	15525	15525		42.095	13.608	1	193680			8338	3523	5581	5622	11377	11377					0.06382315994369492
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3029174804688	2	531.303124	1060.5917	0.80959	0.00043014	-0.047574	-2.5276E-05	0.76202	0.00040486	531.302834912888	67.09	0.56816	67.155	66.871	67.439	0.065071					28	19	2	0	0	0	0.092418	1	15362	15362		34.102	8.7031	1	159120			8339	3523	5581	5622	11378	11378					0.06382315994369492
IYNSFHKLR	9	Unmodified	_IYNSFHKLR_					0	0	0		ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3278198242188	2	589.327465	1176.64038	0.30653	0.00018065	-0.90007	-0.00053044	-0.59354	-0.00034979	589.3268579883292	52.35	0.62617	52.35	52.162	52.788	0					43	21	3	0	0	0	0.27332	1	11093	11093		10.074	1.3285	1	318160			8340	1512	5582	5623	11379	11379					0.05912229354112242
IYNSFHKLR	9	Unmodified	_IYNSFHKLR_					0	0	0		ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3267211914062	2	589.327465	1176.64038	0.48021	0.000283	-1.1853	-0.00069851	-0.70506	-0.00041551	589.326746011569	52.316	0.56869	52.383	52.203	52.772	0.067169					46	22	3	0	0	0	0.27332	1	10933	10933		10.074	1.3285	1	276280			8341	1512	5582	5623	11380	11380					0.05912229354112242
IYNSQLNIWI	10	Unmodified	_IYNSQLNIWI_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.3400268554688	2	632.340238	1262.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.315	1	85.338	84.838	85.838	0.023125								0	0	0	0.32595	1	20922	20922		14.405	2.7651	1				8342	1857	5583	5624	11381	11381					0.045096590858975105
IYNTDEVSF	9	Unmodified	_IYNTDEVSF_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2506103515625	2	544.250754	1086.48696	0.17666	9.6146E-05	0.28972	0.00015768	0.46638	0.00025383	544.2509967945731	73.038	0.31492	73.09	72.951	73.266	0.052574					16	10	2	0	0	0	0.23216	1	17218	17218		14.838	1.3304	1	183310			8343	1336	5584	5625	11382	11382					-0.05282850272851647
IYNTLAVYV	9	Unmodified	_IYNTLAVYV_					0	0	0			REV__ENST00000280871.8_1_12:40151546-40151714:-|nuORF	REV__ENST00000280871.8_1_12:40151546-40151714:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.31591796875	2	528.292225	1054.5699	0.047607	2.515E-05	2.8649	0.0015135	2.9125	0.0015387	528.2937204795185	39.427	1.2526	39.427	38.87	40.123	0					58	45	2	0	0	0	0.24263	1	7073	7073		12.532	3.1841	1	217700	+		8344	11294	5585	5626	11383	11383					0.044795112457904906
IYNVPAIVLQV	11	Unmodified	_IYNVPAIVLQV_					0	0	0		ENST00000359195.3_1_7:106505947-106508023:+|nuORF	ENST00000359195.3_1_7:106505947-106508023:+|nuORF	ENST00000359195.3_1_7:106505947-106508023:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.2947998046875	2	614.868631	1227.72271	-0.0055099	-3.3879E-06	-4.3734	-0.0026891	-4.379	-0.0026925	614.8658230406993	100.86	0.090981	100.86	100.82	100.91	0					7	5	2	0	0	0	0.3105	1	25805	25805		5.7319	2.4505	1	28224			8345	6144	5586	5627	11384	11384					0.11795706642396908
IYPDSFTVL	9	Unmodified	_IYPDSFTVL_					0	0	0		ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7765502929688	2	527.776408	1053.53826	0.50647	0.0002673	0.13581	7.1677E-05	0.64228	0.00033898	527.7763752309459	79.469	0.73969	79.469	79.157	79.897	0					64	25	3	0	0	0	0.0045547	3	19320	19275;19320;19382		88.904	59.822	1	521430			8346	1730	5587	5628	11385;11386;11387	11386					0.01363518491848481
IYPDSFTVL	9	Unmodified	_IYPDSFTVL_					0	0	0		ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7764892578125	2	527.776408	1053.53826	0.21126	0.0001115	0.41217	0.00021754	0.62343	0.00032903	527.7765082231654	79.501	0.62844	79.528	79.223	79.851	0.026428					52	22	3	0	0	0	0.0045547	4	19146	19086;19096;19146;19220		88.904	58.679	1	438540			8347	1730	5587	5628	11388;11389;11390;11391	11390					0.01363518491848481
IYPEEAHL	8	Unmodified	_IYPEEAHL_					0	0	0			REV__ENSG00000258484|ENST00000310673|SPESP1	REV__ENSG00000258484|ENST00000310673|SPESP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.4869079589844	2	486.245275	970.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.624	1	67.624	67.124	68.124	0								0	0	0	0.38822	1	15686	15686		5.2307	2.6532	1		+		8348	11106	5588	5629	11392	11392					-0.010422078564829462
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENST00000454078.1_1_6:71318605-71318935:-|nuORF;ENSG00000102172|ENST00000404933|SMS	ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENST00000454078.1_1_6:71318605-71318935:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8131103515625	2	512.813128	1023.6117	0.43616	0.00022367	-0.24512	-0.0001257	0.19104	9.7966E-05	512.8128456971796	67.673	1.2731	67.673	67.285	68.558	0					96	47	3	0	0	0	0.038949	3	15736	15689;15736;15794		45.75	21.076	1	512860			8349	1299	5589	5630	11393;11394;11395	11394					0.10084111724984268
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENST00000454078.1_1_6:71318605-71318935:-|nuORF;ENSG00000102172|ENST00000404933|SMS	ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENST00000454078.1_1_6:71318605-71318935:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8133544921875	2	512.813128	1023.6117	0.6326	0.00032441	-0.35033	-0.00017966	0.28227	0.00014475	512.8127901382669	67.686	1.6364	67.749	67.291	68.927	0.063507					103	59	3	0	0	0	0.038949	4	15566	15523;15566;15615;15668		45.75	15.595	1	577210			8350	1299	5589	5630	11396;11397;11398;11399	11397					0.10084111724984268
IYPLHELALW	10	Unmodified	_IYPLHELALW_					0	0	0		TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8475952148438	2	627.847699	1253.68084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.914	1	78.944	78.444	79.444	0.030159								0	0	0	0.2369	1	18972	18972		25.399	2.663	1				8351	1819	5590	5631	11400	11400					0.06415150953876037
IYPLLGATL	9	Unmodified	_IYPLLGATL_					0	0	0		ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16;ENSG00000127804|ENST00000263092|METTL16	ENST00000571298.5_1_17:2367609-2378577:-|nuORF	ENST00000571298.5_1_17:2367609-2378577:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.79193115234375	2	480.791861	959.569169	0.0035901	1.7261E-06	0.34193	0.0001644	0.34552	0.00016612	480.7918637441205	83.617	0.5015	83.638	83.414	83.915	0.021744					25	17	2	0	0	0	0.017037	1	20391	20391		60.39	35.716	1	49824			8352	2374	5591	5632	11401	11401					0.087767165967648
IYPLLGATL	9	Unmodified	_IYPLLGATL_					0	0	0		ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16;ENSG00000127804|ENST00000263092|METTL16	ENST00000571298.5_1_17:2367609-2378577:-|nuORF	ENST00000571298.5_1_17:2367609-2378577:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	480.791861	959.569169	0.30052	0.00014449	-0.52501	-0.00025242	-0.22449	-0.00010793	480.7915620220534	83.645	0.40879	83.645	83.401	83.809	0	0.0034561	-0.00056088	NaN	60.39	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80232			8353	2374	5591	5632							0.087767165967648
IYPPEVAEF	9	Unmodified	_IYPPEVAEF_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.767822265625	2	532.768583	1063.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.446	1	74.495	73.995	74.995	0.048546								0	0	0	0.11877	1	17608	17608		30.225	0	1				8354	3246	5592	5633	11402	11402					-0.006607680252045611
IYPPLLGALSF	11	Unmodified	_IYPPLLGALSF_					0	0	0		ENST00000380338.8_1_9:20622330-20622507:-|nuORF	ENST00000380338.8_1_9:20622330-20622507:-|nuORF	ENST00000380338.8_1_9:20622330-20622507:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.8447875976562	2	595.844625	1189.6747	0.22266	0.00013267	0.18459	0.00010999	0.40725	0.00024266	595.8446531169803	101.86	1.0046	101.86	101.6	102.6	0					200	72	4	0	0	0	0.0068688	5	26201	26074;26113;26161;26201;26259		131.27	108.53	1	1289900			8355	6285	5593	5634	11403;11404;11405;11406;11407	11406					0.08744632722391543
IYPPLLGALSF	11	Unmodified	_IYPPLLGALSF_					0	0	0		ENST00000380338.8_1_9:20622330-20622507:-|nuORF	ENST00000380338.8_1_9:20622330-20622507:-|nuORF	ENST00000380338.8_1_9:20622330-20622507:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.8446655273438	2	595.844625	1189.6747	0.26849	0.00015998	0.10674	6.36E-05	0.37523	0.00022358	595.8446179370386	101.85	0.88054	101.89	101.58	102.46	0.042656					213	72	4	0	0	0	0.016193	6	26011	25901;25933;25974;26011;26055;26098		118.89	96.158	1	1126400			8356	6285	5593	5634	11408;11409;11410;11411;11412;11413	11411					0.08744632722391543
IYPSLIYII	9	Unmodified	_IYPSLIYII_					0	0	0		ENST00000515159.5_1_5:54922324-54929566:-|nuORF;nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9	ENST00000515159.5_1_5:54922324-54929566:-|nuORF	ENST00000515159.5_1_5:54922324-54929566:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8284301757812	2	547.828443	1093.64233	0.64183	0.00035161	0.78352	0.00042923	1.4253	0.00078084	547.8280725288301	97.78	0.42997	97.78	97.535	97.965	0					37	19	3	0	0	0	0.25209	2	24860	24860;24884		12.532	4.6214	1	72514			8357	4688	5594	5635	11414;11415	11414					0.09925845319389737
IYPSLIYII	9	Unmodified	_IYPSLIYII_					0	0	0		ENST00000515159.5_1_5:54922324-54929566:-|nuORF;nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9	ENST00000515159.5_1_5:54922324-54929566:-|nuORF	ENST00000515159.5_1_5:54922324-54929566:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.8287353515625	2	547.828443	1093.64233	0.62296	0.00034127	1.0337	0.00056629	1.6567	0.00090756	547.8282892167927	97.745	0.36814	97.786	97.589	97.957	0.040855					32	18	2	0	0	0	0.31496	1	24687	24687		4.756	2.1785	1	99999			8358	4688	5594	5635	11416	11416					0.09925845319389737
IYPTAPPRF	9	Unmodified	_IYPTAPPRF_					0	0	0		nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3089599609375	2	531.292559	1060.57057	0.1901	0.000101	0.17802	9.4583E-05	0.36812	0.00019558	531.292611948419	51.485	0.78438	51.485	51.152	51.937	0					39	26	2	0	0	0	0.23598	1	10800	10800		15.847	6.4997	1	96963			8359	7517	5595	5636	11417	11417					0.042703506855104933
IYPTAPPRF	9	Unmodified	_IYPTAPPRF_					0	0	0		nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.308837890625	2	531.292559	1060.57057	0.3658	0.00019435	-0.4749	-0.00025231	-0.10911	-5.7967E-05	531.2921846314351	51.375	0.67995	51.445	51.18	51.86	0.069878					44	25	2	0	0	0	0.23975	1	10632	10632		14.838	5.4551	1	81664			8360	7517	5595	5636	11418	11418					0.042703506855104933
IYPTGLFTPEL	11	Unmodified	_IYPTGLFTPEL_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.8364868164062	2	625.836997	1249.65944	0.27343	0.00017113	-0.3466	-0.00021691	-0.073164	-4.5789E-05	625.8364506745879	88.206	0.53726	88.206	87.948	88.486	0					31	19	2	0	0	0	0.21105	1	21951	21951		28.495	19.749	1	122650			8361	686	5596	5637	11419	11419					0.04459721134503525
IYPTGLFTPEL	11	Unmodified	_IYPTGLFTPEL_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	625.836997	1249.65944	0.33693	0.00021086	5.2474	0.003284	5.5844	0.0034949	625.8416335984298	88.387	0.4175	88.417	88.329	88.747	0.030037	0.10564	0.0066481	NaN	28.495	17	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92879			8362	686	5596	5637							0.04459721134503525
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2882690429688	2	566.289682	1130.56481	-0.05428	-3.0738E-05	-1.6633	-0.00094191	-1.7176	-0.00097265	566.288550443367	72.82	0.67381	72.82	72.528	73.202	0					61	23	3	0	0	0	0.0043658	2	17251	17251;17300		96.111	29.654	1	1120700			8363	4787	5597	5638	11420;11421	11420					0.004752073831923553
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2885131835938	2	566.289682	1130.56481	0.087802	4.9721E-05	-2.095	-0.0011864	-2.0072	-0.0011366	566.2883289282594	72.712	0.6436	72.768	72.538	73.182	0.055939					64	21	4	0	0	0	0.0052407	1	17078	17078		81.89	32.336	1	1073200			8364	4787	5597	5638	11422	11422					0.004752073831923553
IYPVKYTQTF	10	Unmodified	_IYPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.3375244140625	2	630.337164	1258.65977	0.2511	0.00015828	0.33523	0.00021131	0.58633	0.00036958	630.3371807853961	53.618	0.87147	53.618	53.451	54.322	0					61	31	3	0	0	0	0.0092335	3	11439	11392;11439;11492		77.049	64.006	1	772030			8365	1756	5598	5639	11423;11424;11425	11424					0.04079140854355501
IYPVKYTQTF	10	Unmodified	_IYPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3374633789062	2	630.337164	1258.65977	0.44575	0.00028097	0.061979	3.9068E-05	0.50773	0.00032004	630.3370930060497	53.604	0.58081	53.669	53.482	54.063	0.06543					65	24	4	0	0	0	0.065727	2	11307	11260;11307		53.317	40.274	1	704430			8366	1756	5598	5639	11426;11427	11427					0.04079140854355501
IYPVLQALDF	10	Unmodified	_IYPVLQALDF_					0	0	0		nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-2|NCEH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8275756835938	2	589.826432	1177.63831	0.36774	0.0002169	0.38607	0.00022772	0.75381	0.00044462	589.8264969986969	95.621	0.35065	95.621	95.575	95.925	0					23	15	2	0	0	0	0.43214	1	24264	24264		8.1555	2.3951	1	143300			8367	3234	5599	5640	11428	11428					0.05659755825627144
IYPVLQALDF	10	Unmodified	_IYPVLQALDF_					0	0	0		nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-2|NCEH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8272705078125	2	589.826432	1177.63831	0.45246	0.00026687	0.12001	7.0787E-05	0.57247	0.00033766	589.8263159388362	95.603	0.42349	95.642	95.58	96.004	0.038872					32	20	2	0	0	0	0.36848	1	24100	24100		15.248	9.5166	1	231210			8368	3234	5599	5640	11429	11429					0.05659755825627144
IYPVNAISF	9	Unmodified	_IYPVNAISF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2792358398438	2	512.279118	1022.54368	0.43856	0.00022467	0.23322	0.00011948	0.67179	0.00034414	512.2790456399485	77.477	0.45352	77.511	77.369	77.822	0.034485					21	15	2	0	0	0	0.006264	1	18554	18554		78.728	13.493	1	164330			8369	3560	5600	5641	11430	11430					0.03331242074318652
IYPVNAISF	9	Unmodified	_IYPVNAISF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.279118	1022.54368	0.31313	0.00016041	0.32222	0.00016506	0.63535	0.00032548	512.2790874107394	77.522	0.48005	77.522	77.389	77.869	0	0.0054779	5.1343E-05	NaN	78.728	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213550			8370	3560	5600	5641							0.03331242074318652
IYPWVHVVI	9	Unmodified	_IYPWVHVVI_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3265991210938	2	563.326402	1124.63825	0.39746	0.0002239	0.0051675	2.911E-06	0.40263	0.00022681	563.3264025654037	74.537	1.27	74.537	74.262	75.532	0					166	47	5	0	0	0	0.0030805	2	17793	17752;17793		109.15	91.019	1	7830700			8371	3942	5601	5642	11431;11432	11432					0.0809180061630741
IYPWVHVVI	9	Unmodified	_IYPWVHVVI_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3265991210938	2	563.326402	1124.63825	0.43851	0.00024702	-0.051984	-2.9284E-05	0.38652	0.00021774	563.3263421502849	74.523	1.3726	74.571	74.227	75.6	0.048538					158	49	5	0	0	0	0.0030805	3	17619	17576;17619;17746		109.15	86.006	1	6335000			8372	3942	5601	5642	11433;11434;11435	11434					0.0809180061630741
IYPYLLPFI	9	Unmodified	_IYPYLLPFI_					0	0	0		nc|ENSG00000198862|O94822-2|LTN1;ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-2|LTN1	nc|ENSG00000198862|O94822-2|LTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.8131713867188	2	569.830986	1137.64742	-0.070542	-4.0197E-05	0.27289	0.0001555	0.20235	0.0001153	569.8310412461408	106.68	0.62318	106.68	106.53	107.16	0					174	61	4	0	0	0	0.038949	2	27517	27517;27558		45.75	17.577	1	591180			8373	5422	5602	5643	11436;11437	11436					0.08410149181986526
IYPYLLPFI	9	Unmodified	_IYPYLLPFI_					0	0	0		nc|ENSG00000198862|O94822-2|LTN1;ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-2|LTN1	nc|ENSG00000198862|O94822-2|LTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8131103515625	2	569.830986	1137.64742	0.25286	0.00014409	-0.15289	-8.7123E-05	0.099972	5.6967E-05	569.8307648102492	106.65	0.717	106.68	106.51	107.23	0.025711					166	74	3	0	0	0	0.11964	1	27285	27285		28.173	13.592	1	593520			8374	5422	5602	5643	11438	11438					0.08410149181986526
IYPYVIQEL	9	Unmodified	_IYPYVIQEL_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7599487304688	2	569.313158	1136.61176	0.76775	0.00043709	-0.38817	-0.00022099	0.37959	0.0002161	569.3129359448176	80.163	0.72814	80.163	79.897	80.625	0					45	24	3	0	0	0	0.072867	1	19507	19507		53.833	38.995	1	248690			8375	4753	5603	5644	11439	11439					0.04892066934326067
IYPYVIQEL	9	Unmodified	_IYPYVIQEL_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7608032226562	2	569.313158	1136.61176	0.53804	0.00030631	0.10347	5.8906E-05	0.64151	0.00036522	569.3131139950215	80.128	0.62469	80.154	79.938	80.563	0.025536					39	22	3	0	0	0	0.080641	1	19371	19371		51.63	32.373	1	258480			8376	4753	5603	5644	11440	11440					0.04892066934326067
IYQDRDQFAKL	11	Unmodified	_IYQDRDQFAKL_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.2451477050781	3	466.245498	1395.71466	-0.38631	-0.00018011	-0.26386	-0.00012303	-0.65017	-0.00030314	466.24533680062444	42.583	0.52314	42.583	42.423	42.946	0					46	17	4	0	0	0	0.29729	1	8077	8077		18.34	11.238	1	299080			8377	2580	5604	5645	11441	11441					0.03263527655008147
IYQDRDQFAKL	11	Unmodified	_IYQDRDQFAKL_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.2453308105469	3	466.245498	1395.71466	-0.42066	-0.00019613	-0.064867	-3.0244E-05	-0.48552	-0.00022637	466.24545244173856	42.509	0.66215	42.599	42.401	43.064	0.089764					49	24	3	0	0	0	0.33361	1	7914	7914		14.171	7.069	1	209220			8378	2580	5604	5645	11442	11442					0.03263527655008147
IYQELLGLAF	10	Unmodified	_IYQELLGLAF_					0	0	0		ENSG00000172009|ENST00000307741|THOP1;ENST00000590533.1_1_19:2807573-2808419:+|nuORF;ENST00000591149.5_1_19:2807001-2808381:+|nuORF;ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2900390625	2	583.826432	1165.63831	0.44098	0.00025745	0.857	0.00050034	1.298	0.0007578	583.826860334416	95.343	0.19274	95.343	95.212	95.405	0					10	7	2	0	0	0	0.31643	1	24117	24117		9.3831	2.0939	1	56656			8379	4477	5605	5646	11443	11443					0.06211755825665932
IYQEVWNLF	9	Unmodified	_IYQEVWNLF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.30859375	2	606.308406	1210.60226	0.87869	0.00053276	-0.043689	-2.6489E-05	0.83501	0.00050627	606.3082331737749	92.619	1.1417	92.619	92.32	93.462	0					100	43	4	0	0	0	0.0028522	6	23303	23257;23303;23350;23370;23448;23508		110.55	74.426	1	1593600			8380	5648	5606	5647	11444;11445;11446;11447;11448;11449	11445					0.005382986487802555
IYQEVWNLF	9	Unmodified	_IYQEVWNLF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.30859375	2	606.308406	1210.60226	0.95832	0.00058104	-0.24811	-0.00015043	0.71021	0.00043061	606.3081481765366	92.566	1.0791	92.603	92.34	93.419	0.03653					98	41	4	0	0	0	0.0045224	4	23133	23087;23133;23184;23201		90.135	61.053	1	1703000			8381	5648	5606	5647	11450;11451;11452;11453	11451					0.005382986487802555
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(73)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8069458007812	2	624.807716	1247.60088	0.26101	0.00016308	-0.13673	-8.5429E-05	0.12428	7.7654E-05	624.8077405391317	63.844	1.1829	63.844	63.592	64.775	0					80	41	3	0	0	0	0.008054	3	14516	14516;14548;14597		73.196	40.891	1	462160			8382	604	5607	5648	11454;11455;11456	11454		32			-0.01301658711622622
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(73)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.807861328125	2	624.807716	1247.60088	0.40624	0.00025382	-0.32795	-0.00020491	0.07829	4.8917E-05	624.8074173603336	65.29	1.7392	65.29	64.816	66.555	0					153	63	3	0	0	0	0.008054	4	14926	14926;14982;15027;15073		73.196	40.891	1	533980			8383	604	5607	5648	11457;11458;11459;11460	11457		32			-0.01301658711622622
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(61)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.808349609375	2	624.807716	1247.60088	0.35415	0.00022127	-0.026831	-1.6765E-05	0.32732	0.00020451	624.8077100583371	63.731	1.043	63.802	63.617	64.66	0.071014					65	36	3	0	0	0	0.016057	2	14343	14343;14398		61.09	35.691	1	475070			8384	604	5607	5648	11461;11462	11461		32			-0.01301658711622622
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(73)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8080444335938	2	624.807716	1247.60088	0.40847	0.00025521	-0.13489	-8.428E-05	0.27358	0.00017093	624.8075229784577	65.165	1.7667	65.234	64.867	66.634	0.068916					145	67	3	0	0	0	0.008054	4	14798	14798;14846;14900;14949		73.196	40.891	1	562770			8385	604	5607	5648	11463;11464;11465;11466	11463		32			-0.01301658711622622
IYQFIMDRF	9	Unmodified	_IYQFIMDRF_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.8104858398438	2	616.810259	1231.60597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.594	1	71.594	71.094	72.094	0								0	0	0	0.047721	1	16891	16891		49.527	37.287	1				8386	604	5607	5649	11467	11467					-0.0005735484899105359
IYQGGIFEL	9	Unmodified	_IYQGGIFEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.2767944335938	2	520.276575	1038.5386	0.83205	0.0004329	3.3687	0.0017526	4.2007	0.0021855	520.2763955083432	80.182	1.3945	80.182	79.897	81.291	0					194	47	6	0	0	0	0.0027323	2	19529	19484;19529		111.29	40.572	1	4394400			8387	2164	5608	5650	11468;11469	11469					0.020869382117098212
IYQGGIFEL	9	Unmodified	_IYQGGIFEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2769165039062	2	520.276575	1038.5386	0.55204	0.00028721	3.6475	0.0018977	4.1995	0.0021849	520.2765854775637	80.17	1.3492	80.194	79.936	81.285	0.023605					174	47	5	0	0	0	0.0045534	2	19367	19321;19367		88.954	27.801	1	2523000			8388	2164	5608	5650	11470;11471	11471					0.020869382117098212
IYQGRLWAF	9	Unmodified	_IYQGRLWAF_					0	0	0		ENSG00000240247|ENST00000382689|DEFA1B;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000206047|ENST00000382692|DEFA1	ENSG00000240247|ENST00000382689|DEFA1B	ENSG00000240247|ENST00000382689|DEFA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3106079101562	2	577.311284	1152.60801	0.75946	0.00043845	-0.50432	-0.00029115	0.25514	0.0001473	577.3107128378226	66.745	0.51357	66.745	66.555	67.068	0					40	19	3	0	0	0	0.092418	1	15486	15486		34.102	13.649	1	445060			8389	5526	5609	5651	11472	11472					0.037814419511278174
IYQGRLWAF	9	Unmodified	_IYQGRLWAF_					0	0	0		ENSG00000240247|ENST00000382689|DEFA1B;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000206047|ENST00000382692|DEFA1	ENSG00000240247|ENST00000382689|DEFA1B	ENSG00000240247|ENST00000382689|DEFA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3104248046875	2	577.311284	1152.60801	0.72366	0.00041777	-0.65446	-0.00037782	0.069199	3.9949E-05	577.3106604192814	66.74	0.74609	66.805	66.602	67.348	0.065063					45	27	3	0	0	0	0.065541	1	15302	15302		39.957	25.119	1	307530			8390	5526	5609	5651	11473	11473					0.037814419511278174
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8134155273438	2	555.813325	1109.6121	0.62188	0.00034565	-0.17184	-9.5509E-05	0.45004	0.00025014	555.8131872719878	63.049	0.92374	63.049	62.783	63.707	0					87	34	3	0	0	0	0.00061878	3	14274	14274;14325;14381		129.77	54.843	1	1156400			8391	1826;493	5610	5652	11474;11475;11476	11474					0.061674866541807205
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.794921875	2	555.813325	1109.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.79	1	63.79	63.29	64.29	0								0	0	0	0.16041	1	14515	14515		24.021	3.5669	1				8392	1826;493	5610	5652	11477	11477					0.061674866541807205
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8135375976562	2	555.813325	1109.6121	0.649	0.00036072	-0.25418	-0.00014128	0.39482	0.00021944	555.8131613008143	62.954	0.95632	63.027	62.805	63.761	0.072701					88	38	3	0	0	0	0.0016252	4	14129	14091;14129;14175;14231		118.07	52.833	1	1084500			8393	1826;493	5610	5652	11478;11479;11480;11481	11479					0.061674866541807205
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.808837890625	2	574.808574	1147.60259	-0.077092	-4.4313E-05	0.33197	0.00019082	0.25488	0.00014651	574.8087988734103	39.826	0.57889	39.826	39.601	40.18	0					38	19	3	0	0	0	0.20358	1	7235	7235		18.146	4.2403	1	76497			8394	3012	5611	5653	11482	11482					0.03469718368660324
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.80859375	2	574.808574	1147.60259	0.053456	3.0727E-05	-0.11933	-6.859E-05	-0.06587	-3.7863E-05	574.808609046126	39.74	0.38371	39.829	39.634	40.018	0.088562					29	13	3	0	0	0	0.12214	1	7076	7076		27.629	18.246	1	62156			8395	3012	5611	5653	11483	11483					0.03469718368660324
IYQKQILNL	9	Unmodified	_IYQKQILNL_					0	0	0		ENST00000475005.1_1_9:5812814-5833063:-|nuORF	ENST00000475005.1_1_9:5812814-5833063:-|nuORF	ENST00000475005.1_1_9:5812814-5833063:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2612915039062	2	566.839874	1131.66519	0.37365	0.0002118	-0.2143	-0.00012147	0.15936	9.033E-05	566.8396896877985	74.387	0.4447	74.436	74.257	74.701	0.048546					33	15	3	0	0	0	0.22912	1	17547	17547		18.146	1.9972	1	521520			8396	6703	5612	5654	11484	11484					0.10462864436840391
IYQKQILNL	9	Unmodified	_IYQKQILNL_					0	0	0		ENST00000475005.1_1_9:5812814-5833063:-|nuORF	ENST00000475005.1_1_9:5812814-5833063:-|nuORF	ENST00000475005.1_1_9:5812814-5833063:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	566.839874	1131.66519	0.29117	0.00016505	-0.22865	-0.00012961	0.06252	3.5439E-05	566.8395726035371	74.434	0.4615	74.434	74.199	74.661	0	-0.00081567	-1.353E-05	NaN	18.146	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338090			8397	6703	5612	5654							0.10462864436840391
IYQLQDVF	8	Unmodified	_IYQLQDVF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7807006835938	2	513.26875	1024.52295	0.20584	0.00010565	-1.4663	-0.0007526	-1.2604	-0.00064694	513.2678984748944	71.773	0.78496	71.773	71.502	72.287	0					51	27	3	0	0	0	0.35713	1	17031	17031		14.582	2.0501	1	268060			8398	1343	5613	5655	11485	11485					0.011666516946661432
IYQLSCKWSF	10	Unmodified	_IYQLSCKWSF_					0	0	0		nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2	nc|ENSG00000113749|P25021|HRH2	nc|ENSG00000113749|P25021|HRH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.7747802734375	3	425.54612	1273.61653	0.50527	0.00021502	1.6266	0.0006922	2.1319	0.00090722	425.5469750483741	38.357	0.64027	38.357	38.05	38.69	0					43	21	3	0	0	0	0.31771	1	6787	6787		4.1895	0	1	95607			8399	1815	5614	5656	11486	11486					-0.0093337219454952
IYQLSCKWSF	10	Unmodified	_IYQLSCKWSF_					0	0	0		nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2	nc|ENSG00000113749|P25021|HRH2	nc|ENSG00000113749|P25021|HRH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.7748718261719	3	425.54612	1273.61653	0.19536	8.3136E-05	1.653	0.00070344	1.8484	0.00078657	425.5471449385008	38.234	0.63494	38.321	38.017	38.652	0.08688					58	21	4	0	0	0	0.31794	1	6614	6614		1.7423	0.7287	1	98390			8400	1815	5614	5656	11487	11487					-0.0093337219454952
IYQLYEYA	8	Unmodified	_IYQLYEYA_					0	0	0			REV__tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	REV__tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7603149414062	2	531.760758	1061.50696	0.049955	2.6564E-05	-0.80417	-0.00042763	-0.75422	-0.00040106	531.7602830757179	31.883	1.0404	31.957	31.634	32.674	0.07378					91	51	2	0	0	0	0.53894	1	4833	4833		2.0598	0.21551	1	53851	+		8401	13065	5615	5657	11488	11488					-0.021330545422415526
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3368530273438	2	573.337498	1144.66044	-0.56109	-0.00032169	-0.23532	-0.00013492	-0.79641	-0.00045661	573.337263678077	42.054	0.59851	42.054	41.856	42.454	0					47	20	3	0	0	0	0.22861	2	7929	7880;7929		15.248	5.0979	1	164710			8402	4186	5616	5658	11489;11490	11490					0.0938998029407685
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.3369140625	2	573.337498	1144.66044	-0.35151	-0.00020153	-0.068015	-3.8995E-05	-0.41952	-0.00024053	573.3374007683576	41.954	0.67619	42.044	41.816	42.492	0.089764					45	25	3	0	0	0	0.17382	2	7734	7734;7779		21.59	7.1848	1	191950			8403	4186	5616	5658	11491;11492	11491					0.0938998029407685
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3246459960938	2	603.324922	1204.63529	0.2362	0.0001425	0.051914	3.1321E-05	0.28811	0.00017382	603.3248485457352	34.651	0.93877	34.651	34.478	35.417	0					67	34	3	0	0	0	0.083124	3	5672	5672;5720;5773		36.127	25.303	1	99651			8404	3301	5617	5659	11493;11494;11495	11493					0.04115925491510097
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3247680664062	2	603.324922	1204.63529	0.31298	0.00018883	0.018179	1.0968E-05	0.33116	0.0001998	603.3247812275242	34.558	0.59555	34.634	34.445	35.04	0.076244					61	25	3	0	0	0	0.047633	2	5523	5523;5564		43.858	27.709	1	144490			8405	3301	5617	5659	11496;11497	11496					0.04115925491510097
IYQTWLKNL	9	Unmodified	_IYQTWLKNL_					0	0	0		ENST00000507606.2_1_7:135347283-135358947:+|nuORF	ENST00000507606.2_1_7:135347283-135358947:+|nuORF	ENST00000507606.2_1_7:135347283-135358947:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8321533203125	2	589.832049	1177.64954	0.6569	0.00038746	-0.46405	-0.00027371	0.19285	0.00011375	589.8317161504476	64.562	0.2622	64.562	64.457	64.719	0					16	8	2	0	0	0	0.15837	1	14757	14757		34.932	9.5328	1	153140			8406	6894	5618	5660	11498	11498					0.06782577919807409
IYQVSYFSF	9	Unmodified	_IYQVSYFSF_					0	0	0		nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1	nc|ENSG00000115977|Q2M2I8-2|AAK1	nc|ENSG00000115977|Q2M2I8-2|AAK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7714233398438	2	577.281857	1152.54916	0.33386	0.00019273	0.32097	0.00018529	0.65483	0.00037802	577.281866741218	83.771	0.44775	83.792	83.615	84.063	0.021744					21	15	2	0	0	0	0.13341	1	20474	20474		26.268	15.444	1	113580			8407	1933	5619	5661	11499	11499					-0.021010791338540002
IYQVSYFSF	9	Unmodified	_IYQVSYFSF_					0	0	0		nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1	nc|ENSG00000115977|Q2M2I8-2|AAK1	nc|ENSG00000115977|Q2M2I8-2|AAK1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	577.281857	1152.54916	0.61253	0.0003536	0.47373	0.00027348	1.0863	0.00062708	577.2820108547014	83.712	0.44003	83.712	83.55	83.99	0	-0.040226	0.0001009	NaN	26.268	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91976			8408	1933	5619	5661							-0.021010791338540002
IYQVYNALQ	9	Unmodified	_IYQVYNALQ_					0	0	0		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8131713867188	2	556.292756	1110.57096	0.74069	0.00041204	1.5275	0.00084971	2.2681	0.0012618	556.2935764388563	64.874	0.53384	64.874	64.719	65.253	0					21	19	2	0	0	0	0.20004	1	14927	14927		23.148	8.3102	1	48219			8409	4098	5620	5662	11500	11500					0.02009725614720992
IYQWLAQIIV	10	Unmodified	_IYQWLAQIIV_					0	0	0			REV__nc|ENSG00000066117|Q96GM5-2|SMARCD1	REV__nc|ENSG00000066117|Q96GM5-2|SMARCD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.88507080078125	3	416.244658	1245.71214	0.57897	0.00024099	-3.4144	-0.0014212	-2.8355	-0.0011802	416.57788813524485	62.534	0.13692	62.534	62.494	62.631	0					5	4	2	0	0	0	0.31837	1	14142	14142		1.9064	0.31409	1	30618	+		8410	8110	5621	5663	11501	11501					0.09911723987988807
IYQWVRDEL	9	Unmodified	_IYQWVRDEL_					0	0	0		ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1	ENSG00000182568|ENST00000338745|SATB1	ENSG00000182568|ENST00000338745|SATB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7584228515625	2	611.316763	1220.61897	0.23141	0.00014146	-0.22156	-0.00013544	0.0098469	6.0196E-06	611.8179643346165	60.902	0.25891	60.975	60.794	61.053	0.073418					11	8	2	0	0	0	0.21622	1	13481	13481		16.149	4.5088	1	71119			8411	4881	5622	5664	11502	11502					0.017487995347664764
IYQYIQSRF	9	Unmodified	_IYQYIQSRF_					0	0	0		DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant;ENSG00000105204|ENST00000323039|DYRK1B;nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A	DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.7985229492188	2	609.319306	1216.62406	0.58626	0.00035722	-0.38802	-0.00023643	0.19825	0.0001208	609.3189492558257	53.964	0.43484	53.964	53.783	54.218	0					32	14	3	0	0	0	0.12755	1	11510	11510		34.222	11.073	1	174610			8412	306	5623	5665	11503	11503					0.024411033973592566
IYQYIQSRF	9	Unmodified	_IYQYIQSRF_					0	0	0		DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant;ENSG00000105204|ENST00000323039|DYRK1B;nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A	DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.7982177734375	2	609.319306	1216.62406	0.65721	0.00040045	-0.93211	-0.00056795	-0.27489	-0.0001675	609.318483635076	53.907	0.41554	53.973	53.838	54.254	0.065132					27	15	3	0	0	0	0.226	1	11400	11400		22.658	12.584	1	114830			8413	306	5623	5665	11504	11504					0.024411033973592566
IYQYNCFIR	9	Unmodified	_IYQYNCFIR_					0	0	0			REV__ENST00000526353.1_1_11:9983413-9985421:-|nuORF	REV__ENST00000526353.1_1_11:9983413-9985421:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.22772216796875	3	407.202465	1218.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.405	1	62.405	61.905	62.905	0								0	0	0	0.2722	1	14093	14093		2.7352	0.64919	1		+		8414	12328	5624	5666	11505	11505					-0.014985255088049598
IYRCRASGIF	10	Unmodified	_IYRCRASGIF_					0	0	0		ENST00000543968.5_1_9:37521875-37532049:-|nuORF;nc|ENSG00000147912|Q9UK96-2|FBXO10;ENST00000541804.1_1_9:37512546-37588833:-|nuORF;ENSG00000147912|ENST00000432825|FBXO10	ENST00000543968.5_1_9:37521875-37532049:-|nuORF	ENST00000543968.5_1_9:37521875-37532049:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3143310546875	2	593.3135	1184.61245	0.1267	7.5171E-05	-0.22584	-0.00013399	-0.099141	-5.8822E-05	593.3137766941398	72.118	0.58968	72.174	72.004	72.594	0.055931					41	20	3	0	0	0	0.24016	1	16892	16892		29.082	5.9332	1	337050			8415	3347	5625	5667	11506	11506					0.02752583102369499
IYRDIELDD	9	Unmodified	_IYRDIELDD_					0	0	0			REV__nc|ENSG00000185024|Q92994-9|BRF1	REV__nc|ENSG00000185024|Q92994-9|BRF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.81640625	2	576.282586	1150.55062	0.46412	0.00026747	-2.01	-0.0011583	-1.5459	-0.00089088	576.2815610428139	70.057	0.87491	70.117	69.855	70.73	0.060562					59	36	2	0	0	0	0.24533	1	16408	16408		12.241	0	1	259210	+		8416	10655	5626	5668	11507	11507					-0.0186348983577318
IYRDRMRDF	9	Unmodified	_IYRDRMRDF_					0	0	0		tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.0815124511719	3	424.548635	1270.62407	0.41974	0.0001782	-0.76237	-0.00032366	-0.34263	-0.00014547	424.5487901232611	53.267	0.67222	53.267	52.841	53.513	0					47	27	3	0	0	0	0.25458	1	11334	11334		5.7319	0	1	68901			8417	13503	5627	5669	11508	11508					-0.0004121987428788998
IYRGDHAWF	9	Unmodified	_IYRGDHAWF_					0	0	0			REV__ENST00000555846.1_1_14:55498629-55509730:+|nuORF	REV__ENST00000555846.1_1_14:55498629-55509730:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8026733398438	2	582.78289	1163.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.619	1	97.619	97.119	98.119	0								0	0	0	0.2699	1	24821	24821		5.2307	0.47466	1		+		8418	12460	5628	5670	11509	11509					-0.024006056053849534
IYRMPEDQV	9	Unmodified	_IYRMPEDQV_					0	0	0		nc|ENSG00000163531|O94856|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-7|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-6|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-4|NFASC;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;nc|ENSG00000163531|O94856-2|NFASC;ENST00000404977.6_1_1:204937408-204955114:+|nuORF	nc|ENSG00000163531|O94856|NFASC	nc|ENSG00000163531|O94856|NFASC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.3110961914062	2	575.781699	1149.54884	0.21179	0.00012195	0.71442	0.00041135	0.92621	0.0005333	576.2814939537591	60.255	0.53815	60.329	60.066	60.605	0.073418					39	18	3	0	0	0	0.24929	1	13368	13368		9.3831	1.473	1	95014			8419	3915	5629	5671	11510	11510					-0.019948221253798692
IYRMRSCI	8	Unmodified	_IYRMRSCI_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2548828125	2	521.270247	1040.52594	-0.053134	-2.7697E-05	2.246	0.0011708	2.1929	0.0011431	521.2712135628308	45.941	0.86364	45.941	45.556	46.42	0					52	29	4	0	0	0	0.53423	1	9007	9007		5.2307	0.47466	1	115320	+		8420	9483	5630	5672	11511	11511					0.00729880276185213
IYRMVSWH	8	Unmodified	_IYRMVSWH_					0	0	0			REV__ENST00000482587.5_3_1:179833414-179833447:-|nuORF	REV__ENST00000482587.5_3_1:179833414-179833447:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7696533203125	2	546.276386	1090.53822	-0.057996	-3.1682E-05	3.3297	0.0018189	3.2717	0.0017873	546.2778424733842	31.07	0.40376	31.144	30.964	31.368	0.073782					29	20	3	0	0	0	0.53026	1	4511	4511		7.9102	1.7044	1	35284	+		8421	12103	5631	5673	11512	11512					-0.0034275998912107752
IYRSDFWNF	9	Unmodified	_IYRSDFWNF_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5328063964844	3	416.532979	1246.57711	-0.063943	-2.6634E-05	-0.2058	-8.5722E-05	-0.26974	-0.00011236	416.53286408877386	42.828	1.9529	42.828	42.517	44.47	0					148	68	5	0	0	0	0.28919	2	8163	8163;8216		8.1555	3.2585	1	379650			8422	2165	5632	5674	11513;11514	11513					-0.03631756153754395
IYRSDFWNF	9	Unmodified	_IYRSDFWNF_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2435607910156	3	416.532979	1246.57711	-0.02037	-8.485E-06	-0.23616	-9.8367E-05	-0.25653	-0.00010685	416.5328594035986	45.053	0.58482	45.053	44.831	45.416	0					35	20	3	0	0	0	0.25594	1	8757	8757		4.897	0.36815	1	27647			8423	2165	5632	5674	11515	11515					-0.03631756153754395
IYSDNDRRE	9	Unmodified	_IYSDNDRRE_					0	0	0			REV__nc|ENSG00000107290|Q7Z333-3|SETX	REV__nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8084106445312	2	584.273084	1166.53161	0.87094	0.00050887	-2.0419	-0.0011931	-1.171	-0.00068419	584.2716010331796	82.007	0.73636	82.007	81.69	82.426	0					36	25	2	0	0	0	0.24366	1	20040	20040		13.042	0	1	165850	+		8424	8591	5633	5675	11516	11516					-0.044990264068019314
IYSDTQFPSL	10	Unmodified	_IYSDTQFPSL_					0	0	0		nc|ENSG00000091527|Q9UKY7-3|CDV3;nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-3|CDV3	nc|ENSG00000091527|Q9UKY7-3|CDV3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.71875	2	585.787504	1169.56045	0.73805	0.00043234	-0.48493	-0.00028407	0.25312	0.00014827	585.7871562007782	71.37	0.44093	71.428	71.211	71.652	0.058578					24	15	2	0	0	0	0.31481	1	16633	16633		15.248	2.7169	1	135980			8425	1064	5634	5676	11517	11517					-0.017543018303967983
IYSEVATLI	9	Unmodified	_IYSEVATLI_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7843017578125	2	504.784233	1007.55391	0.38704	0.00019537	0.037783	1.9072E-05	0.42483	0.00021445	504.7841294990725	74.927	0.60896	74.927	74.743	75.352	0					46	22	3	0	0	0	0.0076571	1	17951	17951		74.423	3.2892	1	816820			8426	873	5635	5677	11518	11518					0.050438050089155695
IYSEVATLI	9	Unmodified	_IYSEVATLI_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7843322753906	2	504.784233	1007.55391	0.32263	0.00016286	0.0073615	3.7159E-06	0.32999	0.00016657	504.78416100405684	74.906	0.80236	74.95	74.723	75.525	0.044044					56	28	3	0	0	0	0.0076571	2	17776	17776;17847		74.423	9.3208	1	681530			8427	873	5635	5677	11519;11520	11519					0.050438050089155695
IYSEVMEALKL	11	Unmodified	_IYSEVMEALKL_					0	0	0		ENST00000521046.1_1_8:52773369-52773723:-|nuORF;ENSG00000168300|ENST00000522514|PCMTD1	ENST00000521046.1_1_8:52773369-52773723:-|nuORF	ENST00000521046.1_1_8:52773369-52773723:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.3492431640625	2	648.349414	1294.68428	0.41647	0.00027002	0.38192	0.00024762	0.79839	0.00051763	648.3496583332767	75.282	0.41416	75.282	75.09	75.504	0					22	15	2	0	0	0	0.098164	1	18024	18024		46.022	22.233	1	169650			8428	4277	5636	5678	11521	11521					0.0487203294558185
IYSEVMEALKL	11	Unmodified	_IYSEVMEALKL_					0	0	0		ENST00000521046.1_1_8:52773369-52773723:-|nuORF;ENSG00000168300|ENST00000522514|PCMTD1	ENST00000521046.1_1_8:52773369-52773723:-|nuORF	ENST00000521046.1_1_8:52773369-52773723:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3491821289062	2	648.349414	1294.68428	0.2435	0.00015787	0.22939	0.00014872	0.47288	0.00030659	648.3493383924653	75.189	0.32816	75.233	75.169	75.497	0.044037					18	11	2	0	0	0	0.13228	1	17846	17846		40.725	24.576	1	111480			8429	4277	5636	5678	11522	11522					0.0487203294558185
IYSFFEFFD	9	Unmodified	_IYSFFEFFD_					0	0	0			REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.7741088867188	2	607.773865	1213.53318	0.33785	0.00020534	-0.045421	-2.7606E-05	0.29243	0.00017773	607.7740007120532	104.62	0.27759	104.62	104.54	104.82	0					43	26	2	0	0	0	0.31496	1	26913	26913		4.756	0	1	106560	+		8430	13196	5637	5679	11523	11523					-0.0650478537077106
IYSFFEFFD	9	Unmodified	_IYSFFEFFD_					0	0	0			REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.774169921875	2	607.773865	1213.53318	0.66158	0.00040209	-0.50945	-0.00030963	0.15213	9.246E-05	607.7735758218784	104.56	0.20613	104.6	104.54	104.75	0.034004					39	20	3	0	0	0	0.31496	1	26730	26730		4.756	0	1	307870	+		8431	13196	5637	5679	11524	11524					-0.0650478537077106
IYSFHTLSF	9	Unmodified	_IYSFHTLSF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.782470703125	2	557.782025	1113.5495	0.76194	0.000425	0.23181	0.0001293	0.99376	0.0005543	557.7819091244379	67.029	0.54783	67.029	66.761	67.309	0					55	19	4	0	0	0	0.15911	1	15555	15555		32.305	10.559	1	270570			8432	891	5638	5680	11525	11525					-0.0027365941400603333
IYSFHTLSF	9	Unmodified	_IYSFHTLSF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7822265625	2	557.782025	1113.5495	0.9173	0.00051165	-0.55912	-0.00031187	0.35818	0.00019979	557.7814981214301	67.055	0.44856	67.12	66.9	67.348	0.065071					33	15	3	0	0	0	0.0060931	1	15346	15346		85.357	29.18	1	241460			8433	891	5638	5680	11526	11526					-0.0027365941400603333
IYSFLGETF	9	Unmodified	_IYSFLGETF_					0	0	0		ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7860107421875	2	538.768583	1075.52261	0.55056	0.00029662	0.93965	0.00050626	1.4902	0.00080288	538.7691266030478	86.246	0.55455	86.271	86.008	86.563	0.025169					32	20	2	0	0	0	0.092418	1	21242	21242		34.102	5.6156	1	249490			8434	4036	5639	5681	11527	11527					-0.012127680251978745
IYSFSLVFF	9	Unmodified	_IYSFSLVFF_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7810668945312	2	561.797143	1121.57973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.31	1	88.31	87.81	88.81	0								0	0	0	0.22979	1	21992	21992		13.508	2.684	1				8435	176	5640	5682	11528	11528					0.023806992511708813
IYSFSLVFF	9	Unmodified	_IYSFSLVFF_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7811279296875	2	561.797143	1121.57973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.494	1	88.494	87.994	88.994	0								0	0	0	0.22979	1	22047	22047		13.508	2.684	1				8436	176	5640	5682	11529	11529					0.023806992511708813
IYSFSLVFF	9	Unmodified	_IYSFSLVFF_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7807006835938	2	561.797143	1121.57973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.68	1	88.68	88.18	89.18	0								0	0	0	0.22377	1	22102	22102		14.582	7.8585	1				8437	176	5640	5682	11530	11530					0.023806992511708813
IYSFVDYASF	10	Unmodified	_IYSFVDYASF_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.1876220703125	3	404.52549	1210.55464	0.33706	0.00013635	-0.14013	-5.6687E-05	0.19693	7.9663E-05	404.52543425827776	98.711	0.51508	98.753	98.482	98.997	0.041931					50	29	2	0	0	0	0.30149	1	24961	24961		12.873	0	1	221480			8438	5674	5641	5683	11531	11531					-0.04221400342044035
IYSGITDCSW	10	Unmodified	_IYSGITDCSW_					0	0	0			REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7528686523438	2	572.752607	1143.49066	0.17973	0.00010294	2.0674	0.0011841	2.2471	0.001287	572.754073865928	58.745	1.206	58.816	58.415	59.621	0.070477					63	44	2	0	0	0	0.31456	1	12854	12854		14.838	1.7958	1	222390	+		8439	9222	5642	5684	11532	11532					-0.07534503770671108
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3009033203125	2	581.300581	1160.58661	0.36044	0.00020952	0.34076	0.00019808	0.70119	0.0004076	581.3007215400698	71.642	1.0507	71.642	71.386	72.436	0					119	36	5	0	0	0	0.00015475	4	16921	16871;16921;16970;17140		137.42	78.745	1	2538500			8440	4643	5643	5685	11533;11534;11535;11536	11534					0.012740121317847297
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.301025390625	2	581.300581	1160.58661	0.44451	0.0002584	0.11751	6.8309E-05	0.56203	0.00032671	581.3006112267078	71.575	1.0872	71.634	71.346	72.433	0.058578					112	38	5	0	0	0	8.9172E-06	3	16733	16694;16733;16785		149.91	91.235	1	2745900			8441	4643	5643	5685	11537;11538;11539	11538					0.012740121317847297
IYSINLLLI	9	Unmodified	_IYSINLLLI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3349609375	2	531.333893	1060.65323	0.48315	0.00025672	0.278	0.00014771	0.76115	0.00040443	531.3339520852451	99.744	1.0671	99.744	99.485	100.55	0					90	58	2	0	0	0	0.006264	1	25464	25464		78.728	13.493	1	830620			8442	1703	5644	5686	11540	11540					0.12533247693681915
IYSINLLLI	9	Unmodified	_IYSINLLLI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3341674804688	2	531.333893	1060.65323	0.60168	0.00031969	0.2842	0.00015101	0.88588	0.0004707	531.3340217391017	99.655	0.84721	99.698	99.492	100.34	0.042839					88	52	3	0	0	0	0.0046402	2	25287	25287;25328		85.642	20.406	1	1411100			8443	1703	5644	5686	11541;11542	11541					0.12533247693681915
IYSKPKFAGF	10	Unmodified	_IYSKPKFAGF_					0	0	0			REV__ENST00000367409.8_1_1:197073834-197073909:-|nuORF	REV__ENST00000367409.8_1_1:197073834-197073909:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.7967529296875	2	579.321317	1156.62808	0.59267	0.00034335	0.49137	0.00028466	1.084	0.00062801	579.3214528587978	69.876	0.28692	69.876	69.704	69.991	0					14	9	2	0	0	0	0.29716	1	16317	16317		21.747	4.8044	1	124330	+		8444	11562	5645	5687	11543	11543					0.05603192891089748
IYSLEMKMSF	10	Unmodified	_IYSLEMKMSF_					0	0	0		nc|ENSG00000166105|Q8NCI6-2|GLB1L3;ENSG00000166105|ENST00000431683|GLB1L3	nc|ENSG00000166105|Q8NCI6-2|GLB1L3	nc|ENSG00000166105|Q8NCI6-2|GLB1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.804443359375	2	624.803785	1247.59302	0.21266	0.00013287	-0.25135	-0.00015705	-0.03869	-2.4174E-05	624.8038934240592	70.946	0.50548	70.946	70.763	71.269	0					33	17	3	0	0	0	0.42901	1	16708	16708		8.7454	0.58988	1	252750			8445	4131	5646	5688	11544	11544					-0.02087554023410121
IYSLEMKMSF	10	Unmodified	_IYSLEMKMSF_					0	0	0		nc|ENSG00000166105|Q8NCI6-2|GLB1L3;ENSG00000166105|ENST00000431683|GLB1L3	nc|ENSG00000166105|Q8NCI6-2|GLB1L3	nc|ENSG00000166105|Q8NCI6-2|GLB1L3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	624.803785	1247.59302	0.43895	0.00027426	-4.9114	-0.0030686	-4.4724	-0.0027944	624.8003242301797	71.097	0.12763	71.156	71.084	71.211	0.058578	0.1047	-0.0051599	NaN	8.7454	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47426			8446	4131	5646	5688							-0.02087554023410121
IYSPLLFKYF	10	Unmodified	_IYSPLLFKYF_					0	0	0		nc|ENSG00000109911|Q96EB1-3|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-3|ELP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.8604736328125	2	645.860275	1289.706	0.38479	0.00024852	-0.071843	-4.64E-05	0.31295	0.00020212	645.860118445705	82.971	1.0866	82.971	82.723	83.809	0					99	36	4	0	0	0	2.4617E-07	3	20382	20382;20439;20517		148.27	122	1	1384900			8447	7483	5647	5689	11545;11546;11547	11545					0.07273205756473544
IYSPLLFKYF	10	Unmodified	_IYSPLLFKYF_					0	0	0		nc|ENSG00000109911|Q96EB1-3|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-3|ELP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.8604125976562	2	645.860275	1289.706	0.17867	0.00011539	0.11939	7.7107E-05	0.29805	0.0001925	645.8602893050378	82.954	0.98704	82.975	82.764	83.751	0.021744					92	34	4	0	0	0	8.9647E-11	3	20211	20211;20257;20312		160.69	124.18	1	1526300			8448	7483	5647	5689	11548;11549;11550	11548					0.07273205756473544
IYSQTYFRF	9	Unmodified	_IYSQTYFRF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.8062744140625	2	612.806031	1223.59751	0.15853	9.7149E-05	0.36121	0.00022135	0.51974	0.0003185	612.8061617507946	62.327	1.7228	62.327	62.096	63.819	0					175	63	5	0	0	0	0.0046695	3	14236	14236;14286;14499		84.522	67.409	1	4052200			8449	2164	5648	5690	11551;11552;11553	11551					-0.005345854939832861
IYSQTYFRF	9	Unmodified	_IYSQTYFRF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.8060302734375	2	612.806031	1223.59751	0.19833	0.00012154	0.34693	0.0002126	0.54526	0.00033414	612.8061630788795	62.202	1.6782	62.276	62.056	63.734	0.073421					173	63	4	0	0	0	0.0046695	4	14013	14013;14059;14108;14162		84.522	67.409	1	4286200			8450	2164	5648	5690	11554;11555;11556;11557	11554					-0.005345854939832861
IYSRYFFSF	9	Unmodified	_IYSRYFFSF_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.3153076171875	2	615.303124	1228.5917	-0.35693	-0.00021962	0.70572	0.00043423	0.34879	0.00021461	615.3036351749479	73.582	0.57581	73.582	73.373	73.949	0					63	20	4	0	0	0	0.0043678	3	17468	17468;17485;17530		114.19	68.487	1	1622100			8451	2883	5649	5691	11558;11559;11560	11558					-0.013456840056278452
IYSRYFFSF	9	Unmodified	_IYSRYFFSF_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.3153686523438	2	615.303124	1228.5917	-0.092757	-5.7074E-05	0.30586	0.0001882	0.21311	0.00013112	615.3034563888618	73.529	0.55826	73.582	73.379	73.937	0.052574					69	21	4	0	0	0	0.0043678	3	17297	17297;17305;17354		110.79	65.093	1	1502500			8452	2883	5649	5691	11561;11562;11563	11561					-0.013456840056278452
IYSSSLFVDK	10	Unmodified	_IYSSSLFVDK_					0	0	0		ZBTB21|p.E95D|1|0.17|ENSG00000173276|chr21:41993811-41993811|C/G|missense_variant	ZBTB21|p.E95D|1|0.17|ENSG00000173276|chr21:41993811-41993811|C/G|missense_variant	ZBTB21|p.E95D|1|0.17|ENSG00000173276|chr21:41993811-41993811|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2764282226562	2	579.805697	1157.59684	0.26244	0.00015217	1.6014	0.00092851	1.8639	0.0010807	580.3082322496647	52.188	0.31609	52.188	51.989	52.305	0					14	10	2	0	0	0	0.31712	1	11001	11001		6.7232	0	1	62036			8453	13771	5650	5692	11564	11564					0.024345750663314902
IYSTAFDYF	9	Unmodified	_IYSTAFDYF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7588500976562	2	563.758215	1125.50188	0.81066	0.00045702	0.36733	0.00020708	1.178	0.0006641	563.7584025697141	80.389	1.6714	80.389	80.109	81.78	0					186	57	6	0	0	0	0.0032694	2	19730	19730;19788		108	82.598	1	5372200			8454	5648	5651	5693	11565;11566	11565					-0.05585358404869112
IYSTAFDYF	9	Unmodified	_IYSTAFDYF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7582397460938	2	563.758215	1125.50188	0.6928	0.00039057	0.29622	0.000167	0.98902	0.00055757	563.7583569025974	80.412	1.3671	80.435	80.157	81.524	0.023613					169	48	6	0	0	0	0.0099477	2	19635	19635;19687		67.344	44.195	1	4569600			8455	5648	5651	5693	11567;11568	11567					-0.05585358404869112
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.8311157226562	2	595.832049	1189.64954	-0.16672	-9.9337E-05	0.17962	0.00010702	0.012896	7.6841E-06	595.8320629374998	45.822	0.42328	45.822	45.675	46.098	0					21	14	2	0	0	0	0.27929	1	9085	9085		9.3831	5.0539	1	68643			8456	3380	5652	5694	11569	11569					0.06230577919791358
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.8322143554688	2	595.832049	1189.64954	-0.10117	-6.0281E-05	0.35047	0.00020882	0.2493	0.00014854	596.3339025245957	45.748	0.40235	45.834	45.701	46.103	0.085621					22	16	2	0	0	0	0.2546	1	8916	8916		12.241	4.6317	1	67371			8457	3380	5652	5694	11570	11570					0.06230577919791358
IYSTLVTCVTF	11	Unmodified	_IYSTLVTCVTF_					0	0	0		nc|ENSG00000164051|Q96ER9-2|CCDC51;ENSG00000164051|ENST00000395694|CCDC51	nc|ENSG00000164051|Q96ER9-2|CCDC51	nc|ENSG00000164051|Q96ER9-2|CCDC51	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8239135742188	2	623.823032	1245.63151	-0.15273	-9.5279E-05	0.61678	0.00038476	0.46405	0.00028949	623.823532369183	86.453	0.39384	86.453	86.289	86.683	0					30	14	3	0	0	0	0.091297	3	21413	21413;21426;21444		47.594	34.552	1	130370			8458	3975	5653	5695	11571;11572;11573	11571					0.01852074882776833
IYSTLVTCVTF	11	Unmodified	_IYSTLVTCVTF_					0	0	0		nc|ENSG00000164051|Q96ER9-2|CCDC51;ENSG00000164051|ENST00000395694|CCDC51	nc|ENSG00000164051|Q96ER9-2|CCDC51	nc|ENSG00000164051|Q96ER9-2|CCDC51	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.8233642578125	2	623.823032	1245.63151	0.17441	0.0001088	0.30665	0.0001913	0.48107	0.0003001	623.8231837085712	86.4	0.39273	86.425	86.258	86.651	0.025169					25	15	2	0	0	0	0.21105	1	21234	21234		28.495	17	1	96771			8459	3975	5653	5695	11574	11574					0.01852074882776833
IYSTPLPEKF	10	Unmodified	_IYSTPLPEKF_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2431640625	2	597.823889	1193.63323	0.24379	0.00014574	0.92487	0.00055291	1.1687	0.00069865	597.8244131818307	57.045	0.35054	57.045	56.916	57.267	0					25	12	3	0	0	0	0.24582	1	12499	12499		43.982	25.836	1	153630			8460	1640	5654	5696	11575	11575					0.044154519630410505
IYSTPLPEKF	10	Unmodified	_IYSTPLPEKF_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2438354492188	2	597.823889	1193.63323	0.2723	0.00016279	0.59998	0.00035868	0.87228	0.00052147	597.8240762115115	57.014	0.31744	57.08	56.914	57.232	0.066803					21	11	2	0	0	0	0.29789	1	12286	12286		23.79	10.747	1	131520			8461	1640	5654	5696	11576	11576					0.044154519630410505
IYSTSLTFTYT	11	Unmodified	_IYSTSLTFTYT_					0	0	0		nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000505727.1_1_4:26431998-26432626:+|nuORF	nc|ENSG00000168214|Q06330-3|RBPJ	nc|ENSG00000168214|Q06330-3|RBPJ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.88525390625	3	432.883455	1295.62853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.076	1	98.118	97.618	98.618	0.041931								0	0	0	0.33897	1	24808	24808		1.1098	0.33322	1				8462	4269	5655	5697	11577	11577					-0.007454769703599595
IYSTTLWHL	9	Unmodified	_IYSTTLWHL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3034057617188	2	567.303124	1132.5917	0.32539	0.00018459	-0.4563	-0.00025886	-0.13092	-7.427E-05	567.3028069555661	67.831	1.1638	67.831	67.586	68.749	0					83	42	3	0	0	0	0.021119	1	15749	15749		57.471	24.686	1	290900			8463	340	5656	5698	11578	11578					0.030703159943641367
IYSVGAFENF	10	Unmodified	_IYSVGAFENF_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B;RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	ENSG00000183808|ENST00000520560|RBM12B;RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8477783203125	2	573.776939	1145.53933	0.31719	0.000182	-0.062549	-3.5889E-05	0.25464	0.00014611	573.7766610009804	76.732	0.31713	76.732	76.55	76.867	0					15	10	2	0	0	0	0.31565	1	18450	18450		12.241	2.1667	1	74606			8464	4944;7682	5657	5699	11579	11579					-0.027622671392464326
IYSWFTRTF	9	Unmodified	_IYSWFTRTF_					0	0	0		ENST00000441290.6_1_7:114296499-114304492:+|nuORF;nc|ENSG00000128573|O15409-2|FOXP2;ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-9|FOXP2;nc|ENSG00000128573|O15409-4|FOXP2	ENST00000441290.6_1_7:114296499-114304492:+|nuORF	ENST00000441290.6_1_7:114296499-114304492:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.2986450195312	2	610.808574	1219.60259	0.19407	0.00011854	2.3206	0.0014174	2.5147	0.001536	610.8098813447054	71.715	0.28063	71.715	71.53	71.811	0					20	9	3	0	0	0	0.18321	1	16957	16957		30.703	18.172	1	145140			8465	2399	5658	5700	11580	11580					0.001577183686549688
IYSWFTRTF	9	Unmodified	_IYSWFTRTF_					0	0	0		ENST00000441290.6_1_7:114296499-114304492:+|nuORF;nc|ENSG00000128573|O15409-2|FOXP2;ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-9|FOXP2;nc|ENSG00000128573|O15409-4|FOXP2	ENST00000441290.6_1_7:114296499-114304492:+|nuORF	ENST00000441290.6_1_7:114296499-114304492:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.2987060546875	2	610.808574	1219.60259	0.25269	0.00015434	1.7156	0.0010479	1.9683	0.0012023	611.3112640671824	71.679	0.27598	71.737	71.569	71.844	0.058578					13	9	2	0	0	0	0.16724	1	16770	16770		33.445	15.31	1	271190			8466	2399	5658	5700	11581	11581					0.001577183686549688
IYSYLETLF	9	Unmodified	_IYSYLETLF_					0	0	0		RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant;ENSG00000135249|ENST00000257700|RINT1	RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.768798828125	2	574.79734	1147.58013	0.54633	0.00031403	-1.1995	-0.00068945	-0.65314	-0.00037542	574.7963084005196	92.871	0.43764	92.908	92.722	93.16	0.037369					25	16	2	0	0	0	0.24635	1	23265	23265		10.824	4.1008	1	68217			8467	2719	5659	5701	11582	11582					0.012240741803680066
IYTCELSNP	9	Unmodified	_IYTCELSNP_					0	0	0			REV__nc|ENSG00000099250|O14786-3|NRP1	REV__nc|ENSG00000099250|O14786-3|NRP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.300537109375	2	520.241875	1038.4692	0.54812	0.00028516	-3.4959	-0.0018187	-2.9478	-0.0015336	520.240160763422	64.253	0.46899	64.253	64.106	64.575	0					20	15	2	0	0	0	0.24533	1	14677	14677		12.241	2.8932	1	135440	+		8468	8354	5660	5702	11583	11583					-0.048498887993673634
IYTCVTLVTL	10	Unmodified	_IYTCVTLVTL_					0	0	0			REV__ENST00000360472.8_1_1:160184350-160184413:+|nuORF	REV__ENST00000360472.8_1_1:160184350-160184413:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.230712890625	2	563.314843	1124.61513	0.37558	0.00021157	0.64517	0.00036344	1.0208	0.000575	563.3153783966287	62.274	0.24229	62.347	62.236	62.478	0.073421					15	8	2	0	0	0	0.31456	1	13891	13891		14.838	0	1	121100	+		8469	11538	5661	5703	11584	11584					0.05780993716689409
IYTDIIYIF	9	Unmodified	_IYTDIIYIF_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8160400390625	2	580.815533	1159.61651	0.66805	0.00038802	-0.15262	-8.8644E-05	0.51544	0.00029937	580.8155800357601	98.38	0.55072	98.38	98.116	98.667	0					58	28	3	0	0	0	0.083504	1	25018	25018		36.044	5.8194	1	338680			8470	2757	5662	5704	11585	11585					0.04308951077064194
IYTDIIYIF	9	Unmodified	_IYTDIIYIF_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.8153076171875	2	580.815533	1159.61651	0.73781	0.00042853	-0.16557	-9.6168E-05	0.57224	0.00033236	580.8154127374381	98.254	0.33798	98.296	98.124	98.462	0.041931					43	15	3	0	0	0	0.1182	2	24847	24847;24910		28.487	5.3384	1	284650			8471	2757	5662	5704	11586;11587	11586					0.04308951077064194
IYTDPRLLI	9	Unmodified	_IYTDPRLLI_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3267822265625	2	552.326599	1102.63865	0.65406	0.00036125	-0.19235	-0.00010624	0.46171	0.00025501	552.3265417118192	70.182	1.9065	70.242	69.94	71.846	0.060562					232	74	5	0	0	0	0.14091	1	16429	16429		25.399	2.663	1	12379000	+		8472	8208	5663	5705	11588	11588					0.09143175545546
IYTEDYDEE	9	Unmodified	_IYTEDYDEE_					0	0	0			REV__CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant	REV__CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3185424804688	2	588.732591	1175.45063	0.75566	0.00044488	0.59379	0.00034958	1.3494	0.00079446	588.7334152511822	79.712	0.30675	79.712	79.562	79.869	0					15	10	3	0	0	0	0.25845	1	19347	19347		2.0598	0	1	74294	+		8473	7758	5664	5706	11589	11589					-0.13007771960246828
IYTFHQYSV	9	Unmodified	_IYTFHQYSV_					0	0	0		S100A9|p.N17Y|1|0.12|ENSG00000163220|chr1:153358332-153358332|A/T|missense_variant	S100A9|p.N17Y|1|0.12|ENSG00000163220|chr1:153358332-153358332|A/T|missense_variant	S100A9|p.N17Y|1|0.12|ENSG00000163220|chr1:153358332-153358332|A/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.30810546875	2	579.284931	1156.55531	0.5349	0.00030986	-0.65938	-0.00038197	-0.12447	-7.2105E-05	579.2840930219631	60.028	0.6048	60.028	59.758	60.363	0					34	21	2	0	0	0	0.25281	1	13350	13350		6.7232	0.51738	1	183810			8474	13355	5665	5707	11590	11590					-0.016705609023574652
IYTFPHASF	9	Unmodified	_IYTFPHASF_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7691040039062	2	541.768917	1081.52328	0.51286	0.00027785	0.010942	5.9278E-06	0.5238	0.00028378	541.7688571431803	60.258	1.5227	60.258	59.895	61.418	0					130	54	4	0	0	0	1.7467E-05	2	13457	13457;13562		141.83	41.455	1	1379300			8475	1727	5666	5708	11591;11592	11591					-0.014219285855006092
IYTFPHASF	9	Unmodified	_IYTFPHASF_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7691650390625	2	541.768917	1081.52328	0.29973	0.00016239	0.032753	1.7744E-05	0.33248	0.00018013	541.7689603799442	60.185	1.4244	60.258	59.989	61.414	0.073418					111	49	4	0	0	0	8.832E-06	3	13246	13246;13289;13383		149.99	29.544	1	1283600			8476	1727	5666	5708	11593;11594;11595	11593					-0.014219285855006092
IYTHGLALLGF	11	Unmodified	_IYTHGLALLGF_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3136596679688	2	602.839874	1203.66519	0.45555	0.00027463	0.58878	0.00035494	1.0443	0.00062956	602.8402421459793	77.603	0.53011	77.603	77.454	77.984	0					31	18	2	0	0	0	0.28093	1	18743	18743		26.268	10.119	1	260890			8477	3811	5667	5709	11596	11596					0.07150864436812299
IYTKIMDLI	9	Unmodified	_IYTKIMDLI_					0	0	0		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8029174804688	2	555.317386	1108.62022	0.1309	7.2693E-05	0.5248	0.00029143	0.65571	0.00036412	555.3175387748186	72.363	0.63762	72.363	72.137	72.775	0					35	21	2	0	0	0	0.088609	1	17118	17118		34.932	0.82963	1	267670			8478	4560	5668	5710	11597	11597					0.0702529757929824
IYTLCVYVL	9	Unmodified	_IYTLCVYVL_					0	0	0		nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-3|ATP13A4	nc|ENSG00000127249|Q4VNC1-2|ATP13A4	nc|ENSG00000127249|Q4VNC1-2|ATP13A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.80224609375	2	543.798829	1085.5831	0.47363	0.00025756	4.2718	0.002323	4.7454	0.0025805	543.800896876126	71.252	0.4604	71.31	71.108	71.569	0.058578					30	16	3	0	0	0	0.16036	2	16656	16628;16656		23.148	5.0134	1	205660			8479	2359	5669	5711	11598;11599	11599					0.04373626033543587
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2891235351562	2	580.28714	1158.55973	0.53475	0.00031031	1.2784	0.00074186	1.8132	0.0010522	580.287995405933	75.235	0.7311	75.235	74.961	75.692	0					43	28	2	0	0	0	0.0044564	3	17984	17984;17998;18047		92.653	54.679	1	1117100			8480	1339	5670	5712	11600;11601;11602	11600					-0.013210964794325264
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.2914428710938	2	580.28714	1158.55973	0.54334	0.00031529	1.1817	0.00068573	1.725	0.001001	580.2877761733898	75.172	0.67693	75.216	74.943	75.619	0.044037					62	21	4	0	0	0	0.0040275	5	17813	17813;17819;17833;17878;17907		103.35	65.38	1	1290200			8481	1339	5670	5712	11603;11604;11605;11606;11607	11603					-0.013210964794325264
IYTPLYTL	8	Unmodified	_IYTPLYTL_					0	0	0			REV__nc|ENSG00000112337|O00624-2|SLC17A2	REV__nc|ENSG00000112337|O00624-2|SLC17A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2745666503906	2	492.276044	982.537535	-0.065595	-3.2291E-05	-3.4559	-0.0017013	-3.5215	-0.0017336	492.2743288136297	43.497	0.4528	43.497	43.296	43.748	0					34	16	3	0	0	0	0.42348	1	8341	8341		23.148	5.0021	1	87989	+		8482	8712	5671	5713	11608	11608					0.04556723842813426
IYTRLLPAL	9	Unmodified	_IYTRLLPAL_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7696533203125	2	530.331685	1058.64882	0.64041	0.00033963	-0.021735	-1.1527E-05	0.61867	0.0003281	530.3316101083943	67.077	0.46947	67.077	66.84	67.309	0					28	16	2	0	0	0	0.24635	1	15584	15584		10.824	2.2306	1	113600			8483	5664	5672	5714	11609	11609					0.12183783270734239
IYTRLLPAL	9	Unmodified	_IYTRLLPAL_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	530.331685	1058.64882	0.77293	0.00040991	-0.159	-8.432E-05	0.61394	0.00032559	530.3316447394145	67.088	0.50684	67.153	66.871	67.378	0.065063	0.03826	-8.1345E-05	NaN	10.824	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103460			8484	5664	5672	5714							0.12183783270734239
IYTRPDTSF	9	Unmodified	_IYTRPDTSF_					0	0	0		nc|ENSG00000221977|Q8NGC2|OR4E2;ENSG00000221977|ENST00000641524|OR4E2	nc|ENSG00000221977|Q8NGC2|OR4E2	nc|ENSG00000221977|Q8NGC2|OR4E2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7498779296875	2	550.274564	1098.53457	0.55045	0.0003029	-0.52129	-0.00028685	0.029161	1.6047E-05	550.2739423240862	63.273	0.50595	63.273	63.057	63.563	0					29	18	2	0	0	0	0.2446	1	14436	14436		11.64	0	1	104310			8485	5598	5673	5715	11610	11610					-0.010751512820206699
IYTRVTYYL	9	Unmodified	_IYTRVTYYL_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1;PRSS27-TPSB2|1|fusion	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.3244018554688	2	596.324057	1190.63356	0.022464	1.3396E-05	3.7165	0.0022162	3.739	0.0022296	596.326195522586	58.507	0.72232	58.577	58.082	58.804	0.070477					52	25	4	0	0	0	0.098463	1	12790	12790		32.786	13.529	1	269360			8486	4485	5674	5716	11611	11611					0.0458687168288634
IYTRVTYYL	9	Unmodified	_IYTRVTYYL_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1;PRSS27-TPSB2|1|fusion	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	596.324057	1190.63356	-0.16278	-9.7067E-05	3.9156	0.002335	3.7529	0.0022379	596.3257869718308	58.579	0.56139	58.579	58.256	58.818	0	0.00057797	0.00011506	NaN	32.786	46	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278600			8487	4485	5674	5716							0.0458687168288634
IYTSFLRLNF	10	Unmodified	_IYTSFLRLNF_					0	0	0		ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3507690429688	2	637.350606	1272.68666	0.36439	0.00023225	-0.64969	-0.00041408	-0.2853	-0.00018183	637.3506350426377	78.459	0.26851	78.489	78.346	78.615	0.030159					16	9	2	0	0	0	0.24525	1	18833	18833		28.495	18.421	1	127950			8488	3770	5675	5717	11612	11612					0.06122249465556706
IYTSFLRLNF	10	Unmodified	_IYTSFLRLNF_					0	0	0		ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	637.350606	1272.68666	0.16489	0.00010509	-0.12774	-8.1413E-05	0.037154	2.368E-05	637.8525049226182	78.525	0.23788	78.525	78.361	78.599	0	0.018016	0.00045753	NaN	28.495	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94116			8489	3770	5675	5717							0.06122249465556706
IYTSGSTVR	9	Unmodified	_IYTSGSTVR_					0	0	0			REV__FSHR|p.V687L|1|0.23|ENSG00000170820|chr2:48962762-48962762|C/G|missense_variant	REV__FSHR|p.V687L|1|0.23|ENSG00000170820|chr2:48962762-48962762|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2615966796875	2	492.261456	982.50836	0.33908	0.00016691	0.24633	0.00012126	0.58541	0.00028817	492.2616416300111	37.712	0.87446	37.712	37.364	38.239	0					50	30	2	0	0	0	0.27929	1	6625	6625		9.3831	3.1773	1	47556	+		8490	10226	5676	5718	11613	11613					0.01640579546540266
IYTSGSTVR	9	Unmodified	_IYTSGSTVR_					0	0	0			REV__FSHR|p.V687L|1|0.23|ENSG00000170820|chr2:48962762-48962762|C/G|missense_variant	REV__FSHR|p.V687L|1|0.23|ENSG00000170820|chr2:48962762-48962762|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.26171875	2	492.261456	982.50836	0.32735	0.00016114	0.28899	0.00014226	0.61634	0.0003034	492.2616504591702	37.636	0.85913	37.721	37.374	38.233	0.084476					49	30	2	0	0	0	0.27929	1	6473	6473		9.3831	3.1773	1	46165	+		8491	10226	5676	5718	11614	11614					0.01640579546540266
IYTSGSTVR	9	Unmodified	_IYTSGSTVR_					0	0	0			REV__FSHR|p.V687L|1|0.23|ENSG00000170820|chr2:48962762-48962762|C/G|missense_variant	REV__FSHR|p.V687L|1|0.23|ENSG00000170820|chr2:48962762-48962762|C/G|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.261456	982.50836	0.32735	0.00016114	0.28899	0.00014226	0.61634	0.0003034	492.2616504591702	37.636	0.85913	37.721	37.374	38.233	0.084476	0.0042321	2.8486E-05	NaN	9.3831	49	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46165	+		8492	10226	5676	5718							0.01640579546540266
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7908325195312	2	526.790381	1051.56621	-0.0099326	-5.2324E-06	0.1704	8.9766E-05	0.16047	8.4534E-05	526.7906468577861	39.419	3.1429	39.419	39.162	42.305	0					246	113	3	0	0	0	6.155E-09	4	7128	7083;7128;7180;7224		165.72	100.49	1	7864400			8493	4977	5677	5719	11615;11616;11617;11618	11616					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7908325195312	2	526.790381	1051.56621	0.063728	3.3571E-05	0.15777	8.3113E-05	0.2215	0.00011668	526.7906285220347	39.318	2.2426	39.406	39.154	41.397	0.088566					249	87	5	0	0	0	5.7754E-06	3	6961	6917;6961;7003		152.89	87.651	1	6672400			8494	4977	5677	5719	11619;11620;11621	11620					0.04248841471940068
IYTVLFERL	9	Unmodified	_IYTVLFERL_					0	0	0		nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF	nc|ENSG00000108528|Q02978-2|SLC25A11	nc|ENSG00000108528|Q02978-2|SLC25A11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3343505859375	2	577.334424	1152.6543	0.22256	0.00012849	-0.03164	-1.8267E-05	0.19092	0.00011022	577.3342341541868	71.772	0.70138	71.772	71.556	72.258	0					44	24	3	0	0	0	0.0042616	1	16932	16932		100.09	20.494	1	427760			8495	1594	5678	5720	11622	11622					0.08407462062541526
IYTVLFERL	9	Unmodified	_IYTVLFERL_					0	0	0		nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF	nc|ENSG00000108528|Q02978-2|SLC25A11	nc|ENSG00000108528|Q02978-2|SLC25A11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3344116210938	2	577.334424	1152.6543	0.24409	0.00014092	0.058806	3.3951E-05	0.3029	0.00017487	577.3344827211808	71.713	0.66774	71.771	71.542	72.21	0.058578					44	23	3	0	0	0	0.0042616	1	16754	16754		100.09	20.494	1	597650			8496	1594	5678	5720	11623	11623					0.08407462062541526
IYTVTMRII	9	Unmodified	_IYTVTMRII_					0	0	0		tr|U7T0H4|U7T0H4_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00943PE=3SV=1	tr|U7T0H4|U7T0H4_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00943PE=3SV=1	tr|U7T0H4|U7T0H4_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00943PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.824462890625	2	555.323002	1108.63145	0.22534	0.00012514	-0.36879	-0.0002048	-0.14345	-7.9662E-05	555.3226907998359	43.415	0.97695	43.504	43.209	44.186	0.088924					53	34	2	0	0	0	0.23216	1	8183	8183		14.838	3.198	1	135010			8497	13668	5679	5721	11624	11624					0.08148119673455767
IYTWGTEEF	9	Unmodified	_IYTWGTEEF_					0	0	0		ENST00000498309.1_1_5:132203154-132203271:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	ENST00000498309.1_1_5:132203154-132203271:+|nuORF	ENST00000498309.1_1_5:132203154-132203271:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8053588867188	2	573.261122	1144.50769	0.16503	9.4606E-05	0.47291	0.0002711	0.63794	0.00036571	573.2610256609513	73.973	0.68941	73.973	73.541	74.23	0					38	24	2	0	0	0	0.045703	1	17618	17618		61.357	38.621	1	361770			8498	4008	5680	5722	11625	11625					-0.05878259893188442
IYTWGTEEF	9	Unmodified	_IYTWGTEEF_					0	0	0		ENST00000498309.1_1_5:132203154-132203271:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	ENST00000498309.1_1_5:132203154-132203271:+|nuORF	ENST00000498309.1_1_5:132203154-132203271:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.805908203125	2	573.261122	1144.50769	0.38899	0.00022299	0.54769	0.00031397	0.93668	0.00053696	573.261371793165	73.92	0.6779	73.969	73.719	74.396	0.048546					39	24	2	0	0	0	0.19376	1	17404	17404		25.399	12.357	1	436790			8499	4008	5680	5722	11626	11626					-0.05878259893188442
IYTWPDTSF	9	Unmodified	_IYTWPDTSF_					0	0	0		OR4E2|p.R260W|1|0.49|ENSG00000221977|chr14:21665860-21665860|C/T|missense_variant	OR4E2|p.R260W|1|0.49|ENSG00000221977|chr14:21665860-21665860|C/T|missense_variant	OR4E2|p.R260W|1|0.49|ENSG00000221977|chr14:21665860-21665860|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2630615234375	2	565.263665	1128.51278	-0.024245	-1.3705E-05	-0.77552	-0.00043837	-0.79976	-0.00045208	565.2632022247157	39.515	0.31509	39.515	39.433	39.748	0					14	11	2	0	0	0	0.33704	1	7175	7175		1.8442	0	1	86288			8500	7656	5681	5723	11627	11627					-0.046339560306023486
IYTYQFENF	9	Unmodified	_IYTYQFENF_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.8580627441406	3	408.85724	1223.54989	0.41589	0.00017004	2.1167	0.00086543	2.5326	0.0010355	408.8582262309271	87.171	0.41149	87.171	87.043	87.455	0					21	15	2	0	0	0	0.30005	1	21654	21654		4.1895	0	1	73042			8501	3569	5682	5724	11628	11628					-0.052942844848075765
IYTYQFENF	9	Unmodified	_IYTYQFENF_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	408.85724	1223.54989	-0.012774	-5.2227E-06	2.7505	0.0011246	2.7378	0.0011193	408.8583666814894	87.201	0.35537	87.229	87.044	87.399	0.02758	0.02925	0.00030416	NaN	4.1895	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121650			8502	3569	5682	5724							-0.052942844848075765
IYVDRQMFL	9	Unmodified	_IYVDRQMFL_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3387451171875	2	592.810259	1183.60597	0.035066	2.0787E-05	-2.9589	-0.0017541	-2.9239	-0.0017333	593.3094212093771	72.978	0.62646	72.978	72.747	73.373	0					30	21	2	0	0	0	0.2229	1	17302	17302		19.257	3.4098	1	141010	+		8503	8186	5683	5725	11629	11629					0.021506451510276747
IYVDRQMFL	9	Unmodified	_IYVDRQMFL_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3388061523438	2	592.810259	1183.60597	0.13283	7.8745E-05	-3.3267	-0.0019721	-3.1938	-0.0018933	593.8110185014331	72.939	0.80511	72.992	72.51	73.315	0.052574					58	27	3	0	0	0	0.15911	1	17109	17109		32.305	17.467	1	143790	+		8504	8186	5683	5725	11630	11630					0.021506451510276747
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.805908203125	2	560.8055	1119.59645	0.11177	6.2679E-05	0.54265	0.00030432	0.65441	0.000367	560.8059028109062	73.295	2.0005	73.295	72.718	74.718	0					169	72	4	0	0	0	3.8843E-24	6	17448	17403;17448;17521;17573;17710;17767		225.63	136.21	1	13920000			8505	4185	5684	5726	11631;11632;11633;11634;11635;11636	11632					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.80615234375	2	560.8055	1119.59645	0.31507	0.00017669	0.30575	0.00017147	0.62082	0.00034816	560.805796249588	73.2	2.1329	73.252	72.743	74.876	0.052574					181	78	4	0	0	0	3.8843E-24	2	17229	17229;17570		225.63	136.21	1	16892000			8506	4185	5684	5726	11637;11638	11637					0.04143200137127678
IYVIGGYDGR	10	Unmodified	_IYVIGGYDGR_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.82177734375	2	556.790381	1111.56621	0.82146	0.00045738	2.1184	0.0011795	2.9398	0.0016369	556.7915915279726	65.62	0.51489	65.62	65.421	65.936	0					34	18	3	0	0	0	0.31667	1	15023	15023		7.9102	1.5561	1	213550			8507	1992	5685	5727	11639	11639					0.014888414719507637
IYVIGLQEL	9	Unmodified	_IYVIGLQEL_					0	0	0		ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.3075561523438	2	524.307875	1046.6012	0.76382	0.00040048	-1.5404	-0.00080766	-0.77661	-0.00040718	524.3069073797348	84.755	0.60303	84.755	84.529	85.132	0					40	26	2	0	0	0	0.02293	1	20919	20919		56.177	29.293	1	321010			8508	2569	5686	5728	11640	11640					0.07976084279880524
IYVIGLQEL	9	Unmodified	_IYVIGLQEL_					0	0	0		ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.3070678710938	2	524.307875	1046.6012	0.4467	0.00023421	-1.2533	-0.00065709	-0.80656	-0.00042288	524.3068926513662	84.708	0.83785	84.731	84.561	85.399	0.023125					55	40	2	0	0	0	0.02293	2	20728	20728;20775		56.177	29.293	1	378560			8509	2569	5686	5728	11641;11642	11641					0.07976084279880524
IYVIPQPHF	9	Unmodified	_IYVIPQPHF_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.82177734375	2	557.30821	1112.60187	0.79963	0.00044564	0.13443	7.4918E-05	0.93405	0.00052056	557.3080637783233	65.622	0.53474	65.622	65.318	65.853	0					37	19	3	0	0	0	0.20004	1	15023	15023		23.148	5.0134	1	92226			8510	2870	5687	5729	11643	11643					0.05006923719588485
IYVIPQPHF	9	Unmodified	_IYVIPQPHF_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.792236328125	2	557.30821	1112.60187	0.71733	0.00039978	-0.42925	-0.00023923	0.28808	0.00016055	557.3078773874681	65.534	0.50813	65.601	65.365	65.874	0.066872					31	19	2	0	0	0	0.20004	1	14916	14916		23.148	0	1	157950			8511	2870	5687	5729	11644	11644					0.05006923719588485
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7767944335938	2	521.776408	1041.53826	0.36163	0.00018869	0.026421	1.3786E-05	0.38805	0.00020248	521.7762845015037	74.434	0.68467	74.434	74.199	74.884	0					49	24	3	0	0	0	7.6618E-09	2	17739	17739;17787		162.95	105.48	1	581440			8512	1955	5688	5730	11645;11646	11645					0.019155184918417945
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7766723632812	2	521.776408	1041.53826	0.35622	0.00018587	0.019445	1.0146E-05	0.37567	0.00019602	521.7763014007278	74.385	0.76892	74.434	74.203	74.972	0.048546					53	27	3	0	0	0	4.1078E-06	2	17578	17578;17628		154.46	96.992	1	669600			8513	1955	5688	5730	11647;11648	11647					0.019155184918417945
IYVIVVNCSE	10	Unmodified	_IYVIVVNCSE_					0	0	0		DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7938232421875	2	569.794275	1137.574	-0.017172	-9.7845E-06	-0.67181	-0.00038279	-0.68898	-0.00039258	569.7939093438531	105.96	0.30093	105.96	105.89	106.19	0					80	28	3	0	0	0	0.35104	2	27315	27315;27334		17.113	0	1	1045300			8514	284	5689	5731	11649;11650	11649					0.01071232677190892
IYVLPMLTI	9	Oxidation (M)	_IYVLPM(Oxidation (M))LTI_		IYVLPM(1)LTI		IYVLPM(100)LTI	0	0	1		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8145751953125	2	539.814479	1077.6144	0.56265	0.00030373	0.11572	6.2468E-05	0.67837	0.00036619	539.814310205059	92.108	1.2426	92.108	91.763	93.006	0					61	46	2	0	0	0	0.0042188	1	23121	23121		101.72	48.146	1	334330			8515	2634	5690	5732	11651	11651		169			0.07870199067610884
IYVLPMLTI	9	Oxidation (M)	_IYVLPM(Oxidation (M))LTI_		IYVLPM(1)LTI		IYVLPM(54)LTI	0	0	1		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7756958007812	2	539.814479	1077.6144	0.3059	0.00016513	-0.84616	-0.00045677	-0.54026	-0.00029164	539.8138544389991	90.335	0.59747	90.335	90.21	90.808	0					54	22	3	0	0	0	0.011069	1	22626	22626		53.576	28.902	1	471520			8516	2634	5690	5732	11652	11652		169			0.07870199067610884
IYVLPMLTI	9	Oxidation (M)	_IYVLPM(Oxidation (M))LTI_		IYVLPM(1)LTI		IYVLPM(67)LTI	0	0	1		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8142700195312	2	539.814479	1077.6144	0.56739	0.00030629	-0.12147	-6.5571E-05	0.44592	0.00024072	539.8142503691024	92.048	1.2021	92.084	91.746	92.948	0.036522					68	42	4	0	0	0	0.0099477	1	22933	22933		67.344	31.3	1	270230			8517	2634	5690	5732	11653	11653		169			0.07870199067610884
IYVLPMLTI	9	Oxidation (M)	_IYVLPM(Oxidation (M))LTI_		IYVLPM(1)LTI		IYVLPM(42)LTI	0	0	1		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.775634765625	2	539.814479	1077.6144	0.16789	9.0628E-05	-0.50903	-0.00027478	-0.34114	-0.00018415	539.8140062952479	90.346	0.73683	90.38	90.17	90.907	0.034065					73	30	3	0	0	0	0.043667	1	22441	22441		42.095	18.946	1	386220			8518	2634	5690	5732	11654	11654		169			0.07870199067610884
IYVLTGHVA	9	Unmodified	_IYVLTGHVA_					0	0	0			REV__ADAM21|p.D4H|1|0.07|ENSG00000139985|chr14:70457509-70457509|G/C|missense_variant	REV__ADAM21|p.D4H|1|0.07|ENSG00000139985|chr14:70457509-70457509|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7787780761719	2	486.779285	971.544017	0.33891	0.00016498	-0.028432	-1.384E-05	0.31048	0.00015114	486.77916887538214	70.285	0.44081	70.285	70.114	70.555	0					28	16	2	0	0	0	0.11022	1	16490	16490		30.225	3.3412	1	269570	+		8519	7694	5691	5733	11655	11655					0.057106617941940385
IYVNLIFLL	9	Unmodified	_IYVNLIFLL_					0	0	0			REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF	REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.34423828125	2	554.344261	1106.67397	0.45903	0.00025446	-0.19348	-0.00010726	0.26555	0.0001472	554.3440542505431	77.126	1.1127	77.126	76.756	77.869	0					81	45	4	0	0	0	0.1182	2	18530	18530;18674		28.487	5.7506	1	1379800	+		8520	11662	5692	5734	11656;11657	11656					0.12489838073338433
IYVNLIFLL	9	Unmodified	_IYVNLIFLL_					0	0	0			REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF	REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.3442993164062	2	554.344261	1106.67397	0.62706	0.00034761	-0.34176	-0.00018945	0.2853	0.00015815	554.343936878498	77.039	1.0672	77.074	76.729	77.796	0.034485					88	42	3	0	0	0	0.1182	1	18403	18403		28.487	3.0875	1	1027600	+		8521	11662	5692	5734	11658	11658					0.12489838073338433
IYVPDIRNVF	10	Unmodified	_IYVPDIRNVF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3421020507812	2	618.342781	1234.67101	-0.10649	-6.585E-05	0.31702	0.00019602	0.21052	0.00013017	618.342902763305	76.068	0.63335	76.068	75.917	76.55	0					73	36	3	0	0	0	0.17079	2	18279	18234;18279		37.075	19.962	1	2253100			8522	2993	5693	5735	11659;11660	11660					0.06305962948499655
IYVPDIRNVF	10	Unmodified	_IYVPDIRNVF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3427124023438	2	618.342781	1234.67101	-0.028645	-1.7712E-05	0.38703	0.00023932	0.35839	0.00022161	618.3428853729217	76.053	0.56037	76.092	75.908	76.469	0.03923					66	31	3	0	0	0	0.18348	2	18103	18063;18103		35.612	18.499	1	2454400			8523	2993	5693	5735	11661;11662	11662					0.06305962948499655
IYVPRGAV	8	Unmodified	_IYVPRGAV_					0	0	0			REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF	REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.7606506347656	2	437.760895	873.507237	0.65473	0.00028662	-0.62379	-0.00027307	0.030944	1.3546E-05	437.7605264924728	63.836	1.2236	63.836	63.592	64.816	0					100	43	4	0	0	0	0.46036	1	14721	14721		18.135	0	1	845390	+		8524	12145	5694	5736	11663	11663					0.06542409968278662
IYVPRGAV	8	Unmodified	_IYVPRGAV_					0	0	0			REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF	REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7607727050781	2	437.760895	873.507237	0.30174	0.00013209	-0.1615	-7.0698E-05	0.14024	6.1391E-05	437.7607138654721	63.707	1.187	63.778	63.563	64.75	0.071018					82	41	3	0	0	0	0.42348	1	14524	14524		23.148	0	1	1212600	+		8525	12145	5694	5736	11664	11664					0.06542409968278662
IYVPRGAV	8	Unmodified	_IYVPRGAV_					0	0	0			REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF	REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7263488769531	2	437.760895	873.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.753	1	64.821	64.321	65.321	0.068916								0	0	0	0.38822	1	14663	14663		8.5933	3.3626	1		+		8526	12145	5694	5736	11665	11665					0.06542409968278662
IYVPVSLGF	9	Unmodified	_IYVPVSLGF_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.78411865234375	2	497.784036	993.553519	0.36885	0.00018361	-0.53431	-0.00026597	-0.16546	-8.2362E-05	497.7836537965087	87.98	0.4577	88.01	87.739	88.196	0.030037					26	15	3	0	0	0	0.021119	1	21719	21719		57.471	28.985	1	128180			8527	4513	5695	5737	11666	11666					0.05648430079725131
IYVQFDNGQL	10	Unmodified	_IYVQFDNGQL_					0	0	0			REV__ENST00000534564.5_1_11:85975200-85975380:+|nuORF	REV__ENST00000534564.5_1_11:85975200-85975380:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.79248046875	2	598.800946	1195.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.8	1	82.821	82.321	83.321	0.021744								0	0	0	0.30402	1	20154	20154		17.113	3.2068	1		+		8528	12374	5696	5738	11667	11667					-0.0026319321918890637
IYVSNQNYVI	10	Unmodified	_IYVSNQNYVI_					0	0	0			REV__ENSG00000221937|ENST00000408947|TAS2R40	REV__ENSG00000221937|ENST00000408947|TAS2R40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8175048828125	2	606.816596	1211.61864	0.75336	0.00045715	2.4469	0.0014848	3.2002	0.0019419	606.8179676635542	82.727	0.36441	82.727	82.563	82.928	0					21	12	2	0	0	0	0.28643	1	20303	20303		24.021	1.2843	1	101410	+		8529	11021	5697	5739	11668	11668					0.02129379814891763
IYVSNQNYVI	10	Unmodified	_IYVSNQNYVI_					0	0	0			REV__ENSG00000221937|ENST00000408947|TAS2R40	REV__ENSG00000221937|ENST00000408947|TAS2R40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8009643554688	2	606.816596	1211.61864	0.70919	0.00043035	3.41	0.0020693	4.1192	0.0024996	606.8184734231091	82.777	0.48317	82.799	82.617	83.1	0.021744					25	16	2	0	0	0	0.41688	1	20113	20113		10.074	0.6908	1	112610	+		8530	11021	5697	5739	11669	11669					0.02129379814891763
IYVTGGHLF	9	Unmodified	_IYVTGGHLF_					0	0	0		KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;ENSG00000130487|ENST00000648057|KLHDC7B;nc|ENSG00000130487|Q96G42|KLHDC7B	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7713317871094	2	503.77146	1005.52837	0.35776	0.00018023	0.064915	3.2702E-05	0.42268	0.00021293	503.7711565037384	57.772	0.5136	57.772	57.514	58.027	0					41	17	4	0	0	0	0.017037	1	12693	12693		60.39	20.432	1	191860			8531	7373	5698	5740	11670	11670					0.02582375277143001
IYVTGGHLF	9	Unmodified	_IYVTGGHLF_					0	0	0		KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;ENSG00000130487|ENST00000648057|KLHDC7B;nc|ENSG00000130487|Q96G42|KLHDC7B	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7713928222656	2	503.77146	1005.52837	0.27795	0.00014002	0.13431	6.7661E-05	0.41226	0.00020768	503.77141246865915	57.727	0.53254	57.796	57.547	58.08	0.068375					25	19	2	0	0	0	0.045114	1	12524	12524		44.407	15.92	1	162820			8532	7373	5698	5740	11671	11671					0.02582375277143001
IYVTKKEI	8	Unmodified	_IYVTKKEI_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7640380859375	2	497.302593	992.590633	0.52225	0.00025972	-0.46602	-0.00023175	0.056235	2.7966E-05	497.3022987524894	53.609	0.2971	53.674	53.597	53.894	0.06543					18	12	2	0	0	0	0.35682	1	11283	11283		15.847	1.9411	1	62732	+		8533	13104	5699	5741	11672	11672					0.09404101625477779
IYWFLMFI	8	Unmodified	_IYWFLMFI_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2789916992188	2	566.798632	1131.58271	0.2098	0.00011891	4.0461	0.0022933	4.2559	0.0024122	566.8009502957857	68.77	0.36399	68.832	68.718	69.082	0.062126					19	13	2	0	0	0	0.35256	1	15865	15865		17.087	0	1	73166	+		8534	10261	5700	5742	11673	11673					0.02218251104341107
IYWMVNYNF	9	Unmodified	_IYWMVNYNF_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.2896728515625	2	625.289159	1248.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.572	1	89.572	89.072	90.072	0								0	0	0	0.2722	1	22371	22371		4.756	2.0208	1				8535	1702	5701	5743	11674	11674					-0.05057330257363901
IYWMVNYNF	9	Oxidation (M)	_IYWM(Oxidation (M))VNYNF_		IYWM(1)VNYNF		IYWM(44)VNYNF	0	0	1		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.2869262695312	2	633.286617	1264.55868	0.32608	0.0002065	-0.54286	-0.00034378	-0.21678	-0.00013728	633.2864867738508	82.024	0.44406	82.046	81.876	82.32	0.021866					28	15	3	0	0	0	0.047633	1	19938	19938		43.858	34.314	1	136650			8536	1702	5701	5744	11675	11675		101			-0.0630163411999547
IYYDVNAGLES	11	Unmodified	_IYYDVNAGLES_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7955932617188	2	622.295693	1242.57683	0.080296	4.9968E-05	-2.8493	-0.0017731	-2.769	-0.0017232	622.7950490431723	75.56	0.42345	75.56	75.251	75.674	0					44	16	4	0	0	0	0.27776	1	18052	18052		20.581	1.3239	1	565730	+		8537	13102	5702	5745	11676	11676					-0.034752206642679084
IYYFKANVF	9	Unmodified	_IYYFKANVF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8079833984375	2	582.808042	1163.60153	0.83206	0.00048493	-0.2955	-0.00017222	0.53656	0.00031271	582.8080434431992	65.597	0.73849	65.597	65.398	66.137	0					63	26	3	0	0	0	0.0046476	2	15061	15061;15109		85.357	47.383	1	373070			8538	1695	5703	5746	11677;11678	11677					0.02627503999747205
IYYFKANVF	9	Unmodified	_IYYFKANVF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.808349609375	2	582.808042	1163.60153	0.76397	0.00044525	-0.094842	-5.5275E-05	0.66913	0.00038998	582.807819938169	65.521	0.60287	65.588	65.422	66.025	0.066872					58	23	3	0	0	0	0.0076571	1	14936	14936		74.423	36.449	1	542700			8539	1695	5703	5746	11679	11679					0.02627503999747205
IYYLLLERL	9	Unmodified	_IYYLLLERL_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8403930664062	2	598.357899	1194.70125	0.22908	0.00013707	-0.4829	-0.00028895	-0.25382	-0.00015187	598.3573643771642	78.704	0.76488	78.704	78.423	79.188	0					33	26	2	0	0	0	0.19376	1	19024	19024		25.399	10.561	1	151440			8540	3091	5704	5747	11680	11680					0.11168321613718035
IYYLLLERL	9	Unmodified	_IYYLLLERL_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8406372070312	2	598.357899	1194.70125	0.30716	0.00018379	-0.3296	-0.00019722	-0.022435	-1.3424E-05	598.357669301778	78.57	0.38954	78.6	78.428	78.818	0.030159					19	13	3	0	0	0	0.1789	1	18850	18850		29.082	15.176	1	95909			8541	3091	5704	5747	11681	11681					0.11168321613718035
IYYLYPFN	8	Unmodified	_IYYLYPFN_					0	0	0		ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7927856445312	2	546.773668	1091.53278	0.56145	0.00030699	-1.107	-0.00060529	-0.54556	-0.0002983	546.7735922207223	98.784	0.22311	98.826	98.782	99.005	0.041931					15	12	2	0	0	0	0.3576	1	25039	25039		6.3541	0	1	31242			8542	3971	5705	5748	11682	11682					-0.009321602999534662
IYYTGKYQSL	10	Unmodified	_IYYTGKYQSL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3179321289062	2	618.318971	1234.62339	-0.040719	-2.5178E-05	-0.074421	-4.6016E-05	-0.11514	-7.1193E-05	618.318752790776	47.418	0.5068	47.418	47.2	47.707	0					32	16	3	0	0	0	0.072643	2	9515	9515;9570		51.415	11.458	1	181920			8543	356	5706	5749	11683;11684	11683					0.015462639576753645
IYYTGKYQSL	10	Unmodified	_IYYTGKYQSL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.319091796875	2	618.318971	1234.62339	0.032201	1.9911E-05	-0.17267	-0.00010676	-0.14046	-8.6851E-05	618.3187116560034	47.343	0.35786	47.426	47.219	47.577	0.083092					30	13	3	0	0	0	0.086538	1	9363	9363		47.594	25.848	1	150500			8544	356	5706	5749	11685	11685					0.015462639576753645
IYYVDVQKF	9	Unmodified	_IYYVDVQKF_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.8109130859375	2	587.810782	1173.60701	0.64938	0.00038171	-0.35917	-0.00021112	0.29021	0.00017059	587.8105337521715	60.379	0.40958	60.379	60.26	60.669	0					26	14	2	0	0	0	0.056368	1	13488	13488		41.956	11.319	1	161080			8545	3760	5707	5750	11686	11686					0.027151827915531612
IYYVDVQKF	9	Unmodified	_IYYVDVQKF_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.8103637695312	2	587.810782	1173.60701	0.49798	0.00029272	-0.37304	-0.00021928	0.12494	7.3441E-05	587.8104921736954	60.358	0.31212	60.431	60.239	60.551	0.073421					17	10	2	0	0	0	0.081383	1	13322	13322		36.506	7.4246	1	152500			8546	3760	5707	5750	11687	11687					0.027151827915531612
KAAKKKKKK	9	Unmodified	_KAAKKKKKK_					0	0	0		nc|ENSG00000121766|Q9NP64-2|ZCCHC17;nc|ENSG00000121766|Q9NP64-3|ZCCHC17;ENSG00000121766|ENST00000344147|ZCCHC17	nc|ENSG00000121766|Q9NP64-2|ZCCHC17	nc|ENSG00000121766|Q9NP64-2|ZCCHC17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.34814453125	2	529.382043	1056.74953	0.29723	0.00015735	0.10405	5.5084E-05	0.40128	0.00021243	529.3821989196223	109.34	0.36346	109.36	109.24	109.6	0.019402					68	40	2	0	0	0	0.25981	1	27960	27960		0	0	1	753220			8547	2163	5708	5751	11688	11688					0.22342860044273039
KADGVPVYL	9	Unmodified	_KADGVPVYL_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.27117919921875	2	481.271293	960.528032	-0.091181	-4.3883E-05	0.31396	0.0001511	0.22277	0.00010721	481.27129918438044	51.913	0.62329	51.913	51.682	52.305	0					38	21	3	0	0	0	0.20358	1	10877	10877		18.146	4.2403	1	201000			8548	1930	5709	5752	11689	11689					0.04618955557270965
KAFESEPTL	9	Unmodified	_KAFESEPTL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2633972167969	2	511.263665	1020.51278	-0.35794	-0.000183	0.18337	9.3748E-05	-0.17457	-8.9251E-05	511.26362119408645	42.624	0.83676	42.624	42.395	43.231	0					64	28	4	0	0	0	0.020768	1	8060	8060		57.722	15.882	1	309710			8549	5297	5710	5753	11690	11690					0.003340439694284214
KAFESEPTL	9	Unmodified	_KAFESEPTL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2631530761719	2	511.263665	1020.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.44	1	42.53	42.03	43.03	0.089764								0	0	0	0.072004	1	7902	7902		41.956	7.5538	1				8550	5297	5710	5753	11691	11691					0.003340439694284214
KAFRLHMHLI	10	Unmodified	_KAFRLHMHLI_					0	0	0		ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A;ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000197782|ENST00000683561|ZNF780A	ENSG00000197782|ENST00000683561|ZNF780A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.5818786621094	3	422.581499	1264.72267	0.35794	0.00015126	0.59127	0.00024986	0.94921	0.00040112	422.58168391894753	89.602	1.5665	89.602	89.009	90.575	0					124	62	3	0	0	0	0.47161	1	22430	22430		0.69767	0.69767	1	397980			8551	5321	5711	5754	11692	11692					0.1008942816142735
KAFRLHMHLI	10	Unmodified	_KAFRLHMHLI_					0	0	0		ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A;ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000197782|ENST00000683561|ZNF780A	ENSG00000197782|ENST00000683561|ZNF780A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	422.581499	1264.72267	0.35794	0.00015126	0.59127	0.00024986	0.94921	0.00040112	422.58168391894753	89.602	1.5665	89.602	89.009	90.575	0	-0.10285	-0.00025878	NaN	0.69767	124	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397980			8552	5321	5711	5754							0.1008942816142735
KAFRLHMHLI	10	Unmodified	_KAFRLHMHLI_					0	0	0		ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A;ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000197782|ENST00000683561|ZNF780A	ENSG00000197782|ENST00000683561|ZNF780A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	422.581499	1264.72267	0.049962	2.1113E-05	0.95645	0.00040418	1.0064	0.00042529	422.91629832155144	89.774	1.6702	89.808	88.389	90.059	0.034058	0.10285	0.00020417	NaN	0.69767	146	66	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304120			8553	5321	5711	5754							0.1008942816142735
KAIIRSKR	8	Unmodified	_KAIIRSKR_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.3271484375	2	486.327268	970.639983	-0.26588	-0.00012931	0.49432	0.0002404	0.22844	0.0001111	486.32745634513236	109.48	0.20488	109.48	109.33	109.53	0					34	25	2	0	0	0	0.53494	1	28166	28166		4.756	3.9624	1	1727100	+		8554	10746	5712	5755	11693	11693					0.15348854424939873
KAIPPLAI	8	Unmodified	_KAIPPLAI_					0	0	0			REV__LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	REV__LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.77484130859375	2	411.776014	821.537475	0.14176	5.8374E-05	-3.027	-0.0012465	-2.8853	-0.0011881	411.7747160774319	109.58	0.18719	109.58	109.47	109.66	0					39	15	5	0	0	0	0.54081	1	28201	28201		0.79363	0	1	3618700	+		8555	10302	5713	5756	11694	11694					0.11956768633444881
KAKAEELLI	9	Unmodified	_KAKAEELLI_					0	0	0			REV__nc|ENSG00000160710|P55265-5|ADAR	REV__nc|ENSG00000160710|P55265-5|ADAR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.8150634765625	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.1	1	107.13	106.63	107.63	0.025711								0	0	0	0.25287	1	27435	27435		8.7454	1.4562	1		+		8556	9856	5714	5757	11695	11695					0.10583486654184071
KAKKEKRK	8	Unmodified	_KAKKEKRK_					0	0	0		ENST00000361589.8_1_3:173302592-173322094:+|nuORF	ENST00000361589.8_1_3:173302592-173322094:+|nuORF	ENST00000361589.8_1_3:173302592-173322094:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.3401184082031	2	508.340375	1014.6662	-0.10042	-5.105E-05	0.078712	4.0013E-05	-0.021712	-1.1037E-05	508.34019948405273	109.44	0.1411	109.44	109.39	109.53	0					29	15	2	0	0	0	0.53817	1	28160	28160		2.5775	0	1	1078800			8557	6164	5715	5758	11696	11696					0.15945123596418398
KAKQETWFQ	9	Unmodified	_KAKQETWFQ_					0	0	0		ENST00000452825.7_2_X:53221315-53221459:-|nuORF	ENST00000452825.7_2_X:53221315-53221459:-|nuORF	ENST00000452825.7_2_X:53221315-53221459:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.3042602539062	2	583.303655	1164.59276	0.33526	0.00019556	0.39213	0.00022873	0.72739	0.00042429	583.3040974760427	51.378	1.4798	51.378	50.624	52.104	0					97	50	4	0	0	0	0.32112	1	10807	10807		3.9444	0	1	408950			8558	6572	5716	5759	11697	11697					0.017045303632812647
KAKSSLLE	8	Unmodified	_KAKSSLLE_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.26324462890625	2	438.263468	874.512382	-0.39263	-0.00017208	0.19327	8.4702E-05	-0.19937	-8.7375E-05	438.2633892294535	41.977	2.3369	42.067	41.667	44.004	0.089764					203	88	3	0	0	0	0.53858	1	7929	7929		2.3027	0	1	387720	+		8559	9175	5717	5760	11698	11698					0.07010669040244011
KALAPADLME	10	Unmodified	_KALAPADLME_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.77978515625	2	529.781167	1057.54778	-0.088291	-4.6775E-05	-2.3422	-0.0012409	-2.4305	-0.0012876	529.7798809995073	27.703	0.25166	27.785	27.645	27.896	0.082134					26	14	2	0	0	0	0.46746	1	3474	3474		1.4819	0.79152	1	19801			8560	2303	5718	5761	11699	11699					0.021309635057150444
KALAPADLME	10	Unmodified	_KALAPADLME_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	529.781167	1057.54778	-0.13891	-7.3592E-05	-2.5125	-0.0013311	-2.6514	-0.0014046	529.7799344820155	27.749	0.30624	27.749	27.661	27.968	0	-0.017822	-0.00014727	NaN	1.4819	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17133			8561	2303	5718	5761							0.021309635057150444
KALLLELK	8	Unmodified	_KALLLELK_					0	0	0		ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000099804|ENST00000215574|CDC34	ENST00000586788.1_1_19:531880-536341:+|nuORF	ENST00000586788.1_1_19:531880-536341:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.3141174316406	2	464.315503	926.616454	0.090698	4.2113E-05	-2.5291	-0.0011743	-2.4384	-0.0011322	464.3139207213239	109.51	0.20805	109.53	109.44	109.65	0.019402					50	20	3	0	0	0	0.53858	1	28006	28006		2.3027	0	1	1511600			8562	1134	5719	5762	11700	11700					0.15020995867746478
KALNPKRK	8	Unmodified	_KALNPKRK_					0	0	0			REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF	REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.8138122558594	2	477.813993	953.613434	-0.31278	-0.00014945	0.39386	0.00018819	0.081084	3.8743E-05	477.8141120548659	109.48	0.22853	109.48	109.41	109.64	0					33	21	2	0	0	0	0.52502	2	28167	28167;28188		9.3474	1.7838	1	1129900	+		8563	12175	5720	5763	11701;11702	11701					0.13477165533606694
KALNPKRK	8	Unmodified	_KALNPKRK_					0	0	0			REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF	REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.8137512207031	2	477.813993	953.613434	-0.00022734	-1.0862E-07	0.16085	7.6857E-05	0.16062	7.6749E-05	477.8139938126714	109.5	0.22112	109.52	109.42	109.65	0.019402					42	21	3	0	0	0	0.49441	1	27996	27996		13.508	5.5977	1	899720	+		8564	12175	5720	5763	11703	11703					0.13477165533606694
KALNPKRK	8	Unmodified	_KALNPKRK_					0	0	0			REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF	REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	477.813993	953.613434	-0.31278	-0.00014945	0.39386	0.00018819	0.081084	3.8743E-05	477.8141120548659	109.48	0.22853	109.48	109.41	109.64	0	-0.020022	0.00010554	NaN	13.508	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129900	+		8565	12175	5720	5763							0.13477165533606694
KALNPKRK	8	Unmodified	_KALNPKRK_					0	0	0			REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF	REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	477.813993	953.613434	-0.00022734	-1.0862E-07	0.16085	7.6857E-05	0.16062	7.6749E-05	477.8139938126714	109.5	0.22112	109.52	109.42	109.65	0.019402	0.020022	-0.00011713	NaN	13.508	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899720	+		8566	12175	5720	5763							0.13477165533606694
KALRVIEHV	9	Unmodified	_KALRVIEHV_					0	0	0		nc|ENSG00000084110|P42357-3|HAL;nc|ENSG00000084110|P42357-2|HAL;ENSG00000084110|ENST00000261208|HAL	nc|ENSG00000084110|P42357-3|HAL	nc|ENSG00000084110|P42357-3|HAL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.8314819335938	2	532.832383	1063.65021	-0.010064	-5.3626E-06	-2.1724	-0.0011575	-2.1824	-0.0011629	532.8315512511546	109.44	0.15273	109.44	109.35	109.5	0					30	20	2	0	0	0	0.3354	1	28161	28161		2.0598	0.21551	1	533730			8567	944	5721	5764	11704	11704					0.1209341735950602
KALVRRLI	8	Unmodified	_KALVRRLI_					0	0	0			REV__ENST00000474026.5_1_1:223946905-223957668:+|nuORF	REV__ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.3222351074219	2	484.840011	967.665469	-0.31706	-0.00015372	0.36945	0.00017912	0.052392	2.5402E-05	484.84013090430375	112.19	1.1087	112.19	111.92	113.02	0					333	123	4	0	0	0	0.3576	1	28647	28647		0.79363	0	1	8961500	+		8568	9914	5722	5765	11705	11705					0.1803432894737398
KAMLGMPSST	10	Unmodified	_KAMLGMPSST_					0	0	0		ENSG00000130538|ENST00000643195|OR11H1;nc|ENSG00000130538|Q8NG94|OR11H1	ENSG00000130538|ENST00000643195|OR11H1	ENSG00000130538|ENST00000643195|OR11H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.75396728515625	2	511.754095	1021.49364	-0.38098	-0.00019497	0.75294	0.00038532	0.37197	0.00019036	511.75463692421	16.855	0.23724	16.855	16.752	16.989	0					46	28	2	0	0	0	0.46827	1	831	831		1.3295	0	1	25769			8569	2474	5723	5766	11706	11706					-0.016249519174721172
KANPGAWIL	9	Unmodified	_KANPGAWIL_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000102595|ENST00000376747|UGGT2	ENSG00000136731|ENST00000259253|UGGT1;ENSG00000102595|ENST00000376747|UGGT2	ENSG00000136731|ENST00000259253|UGGT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2799987792969	2	485.279452	968.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.193	1	57.193	56.693	57.693	0								0	0	0	0.17567	1	12507	12507		21.747	4.6601	1				8570	2804;1320	5724	5767	11707	11707					0.05882081514039328
KAPPMRAPPF	10	Unmodified	_KAPPMRAPPF_					0	0	0			REV__ENST00000372398.5_1_9:132996136-132996268:+|nuORF	REV__ENST00000372398.5_1_9:132996136-132996268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.308349609375	2	556.307687	1110.60082	0.85818	0.00047741	0.52936	0.00029448	1.3875	0.0007719	556.3078499106107	84.664	1.5446	84.664	84.441	85.985	0					133	68	3	0	0	0	0.45443	1	21060	21060		3.9444	3.9444	1	651520	+		8571	11607	5725	5768	11708	11708					0.04994386079033575
KAPTDKSGW	9	Unmodified	_KAPTDKSGW_					0	0	0			REV__ENSG00000105523|ENST00000263266|FAM83E	REV__ENSG00000105523|ENST00000263266|FAM83E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2203674316406	2	495.256174	988.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.354	1	94.354	93.854	94.854	0								0	0	0	0.28807	1	23828	23828		1.4819	0	1		+		8572	8544	5726	5769	11709	11709					0.0030859689210274155
KARQGKPF	8	Unmodified	_KARQGKPF_					0	0	0			REV__ENSG00000127252|ENST00000264735|PLAAT1	REV__ENSG00000127252|ENST00000264735|PLAAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.73358154296875	2	466.277244	930.539935	0.22792	0.00010628	3.592	0.0016749	3.8199	0.0017811	466.2791088800999	78.861	0.14587	78.861	78.782	78.928	0					6	4	2	0	0	0	0.3576	1	19109	19109		5.2307	2.6532	1	16794	+		8573	8994	5727	5770	11710	11710					0.07188617091139804
KATHLSKLKI	10	Unmodified	_KATHLSKLKI_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|34|1|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|34|1|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.87060546875	2	569.868966	1137.72338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.65	1	109.65	109.15	110.15	0								0	0	0	0.33892	1	28215	28215		1.4819	0	1		+		8574	12722	5728	5771	11711	11711					0.1600254608213163
KATVWGMG	8	Unmodified	_KATVWGMG_					0	0	0			REV__ENST00000283027.9_1_16:10862971-10863142:+|nuORF	REV__ENST00000283027.9_1_16:10862971-10863142:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.2743835449219	2	425.218006	848.421459	0.11789	5.013E-05	0.80638	0.00034289	0.92428	0.00039302	425.2182280361528	109.54	0.15916	109.54	109.47	109.63	0					16	11	2	0	0	0	0.3576	1	28179	28179		2.8892	0.31174	1	814850	+		8575	11302	5729	5772	11712	11712					-0.008814982088779288
KAVARTAR	8	Unmodified	_KAVARTAR_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.774658203125	2	436.774868	871.535184	0.36464	0.00015927	-0.35522	-0.00015515	0.0094217	4.1152E-06	436.7746351015151	85.823	1.0142	85.848	85.549	86.563	0.025169					98	37	4	0	0	0	0.53858	1	21166	21166		2.3027	0	1	2779600			8576	4274	5730	5773	11713	11713					0.0942773294835888
KAVARTAR	8	Unmodified	_KAVARTAR_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	436.774868	871.535184	0.50149	0.00021904	-0.45552	-0.00019896	0.04597	2.0078E-05	436.7745875520682	85.858	0.9507	85.858	85.579	86.529	0	0.0048691	-4.0519E-05	NaN	2.3027	90	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2408600			8577	4274	5730	5773							0.0942773294835888
KAVLLKTKK	9	Unmodified	_KAVLLKTKK_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.36669921875	2	514.863152	1027.71175	0.0066751	3.4368E-06	3.2897	0.0016938	3.2964	0.0016972	515.3664235936535	112.92	0.070877	112.92	112.9	112.97	0					11	8	2	0	0	0	0.34646	1	28943	28943		0.6015	0	1	395050			8578	5174	5731	5774	11714	11714					0.19900349058798383
KAVPRARL	8	Unmodified	_KAVPRARL_					0	0	0			REV__ENST00000469820.1_1_X:102884578-102884773:+|nuORF	REV__ENST00000469820.1_1_X:102884578-102884773:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.8008728027344	2	455.800886	909.587219	0.18191	8.2914E-05	-0.11835	-5.3946E-05	0.063555	2.8968E-05	455.8007909867183	109.52	0.21631	109.54	109.44	109.65	0.019402					44	21	3	0	0	0	0.53771	1	28025	28025		2.8892	0	1	1398100	+		8579	12023	5732	5775	11715	11715					0.128808963621168
KAYALFPFCW	10	Unmodified	_KAYALFPFCW_					0	0	0		nc|ENSG00000109854|Q9BUP3-2|HTATIP2	nc|ENSG00000109854|Q9BUP3-2|HTATIP2	nc|ENSG00000109854|Q9BUP3-2|HTATIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8753356933594	3	415.875689	1244.60524	-0.30138	-0.00012534	-0.4049	-0.00016839	-0.70628	-0.00029373	415.87553115271	27.866	0.75566	27.948	27.602	28.358	0.082134					76	45	2	0	0	0	0.47119	1	3584	3584		0.77653	0.14971	1	41497			8580	7482	5733	5776	11716	11716					-0.0072814949801340845
KCDCLGTELH	10	Unmodified	_KCDCLGTELH_					0	0	0			REV__LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant	REV__LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.27490234375	2	559.752084	1117.48961	-0.046822	-2.6209E-05	0.90322	0.00050558	0.8564	0.00047937	559.7523784775901	29.746	2.0279	29.746	29.404	31.432	0					214	101	3	0	0	0	0.45627	1	4565	4565		3.5965	1.098	1	93825	+		8581	8436	5734	5777	11717	11717					-0.06443041411193917
KCESNRIFFD	10	Unmodified	_KCESNRIFFD_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.822021484375	2	629.79788	1257.58121	0.33742	0.00021251	-0.29474	-0.00018563	0.04268	2.688E-05	629.797598768747	67.432	0.27852	67.432	67.332	67.61	0					15	10	2	0	0	0	0.31667	1	15604	15604		8.7454	2.5396	1	113670	+		8582	9897	5735	5778	11718	11718					-0.03728034722348639
KCKKCDESF	9	Unmodified	_KCKKCDESF_					0	0	0		ENST00000601416.1_19:21281704-21301132:+|nuORF;nc|ENSG00000160352|Q96N38-2|ZNF714;nc|ENSG00000160352|Q96N38|ZNF714;ENSG00000160352|ENST00000456283|ZNF714	ENST00000601416.1_19:21281704-21301132:+|nuORF	ENST00000601416.1_19:21281704-21301132:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2493896484375	2	544.249177	1086.4838	0.4626	0.00025177	-0.11328	-6.1652E-05	0.34932	0.00019012	544.2490831767565	63.562	1.5798	63.633	63.144	64.724	0.071018					85	58	2	0	0	0	0.29105	1	14339	14339		7.9102	7.9102	1	476800			8583	3759	5736	5779	11719	11719					-0.05598139922858536
KCNIFLHYH	9	Unmodified	_KCNIFLHYH_					0	0	0			REV__nc|ENSG00000080802|O95628-6|CNOT4	REV__nc|ENSG00000080802|O95628-6|CNOT4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.8104248046875	2	587.794943	1173.57533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.178	1	72.178	71.678	72.678	0								0	0	0	0.25992	1	17070	17070		7.2892	1.9923	1		+		8584	12757	5737	5780	11720	11720					-0.004510884433557294
KCQSDWMERW	10	Unmodified	_KCQSDWMERW_					0	0	0		ENST00000463427.5_1_2:112843607-112863481:+|nuORF;nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	ENST00000463427.5_1_2:112843607-112863481:+|nuORF	ENST00000463427.5_1_2:112843607-112863481:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.8645935058594	3	456.865635	1367.57508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.553	1	30.628	30.128	31.128	0.075403								0	0	0	0.34005	1	4339	4339		0.15932	0.01943	1				8585	3519	5738	5781	11721	11721					-0.09400876225549837
KCREEENYF	9	Unmodified	_KCREEENYF_					0	0	0			REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.89837646484375	3	406.513367	1216.51827	0.38336	0.00015584	2.7946	0.001136	3.1779	0.0012919	406.5145891283716	36.314	0.30564	36.314	36.155	36.46	0					15	11	2	0	0	0	0.25845	1	6180	6180		1.0715	0.3738	1	5687.3	+		8586	13095	5739	5782	11722	11722					-0.08132600510407428
KDEERPYL	8	Unmodified	_KDEERPYL_					0	0	0		ENST00000230461.10_1_6:75965301-75965511:-|nuORF	ENST00000230461.10_1_6:75965301-75965511:-|nuORF	ENST00000230461.10_1_6:75965301-75965511:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2470703125	2	525.266739	1048.51892	0.0040806	2.1434E-06	0.21398	0.0001124	0.21806	0.00011454	525.2664764366797	35.12	0.13679	35.198	35.142	35.279	0.078827					6	4	2	0	0	0	0.3576	1	5693	5693		0.79363	0	1	13419			8587	5810	5740	5783	11723	11723					-0.00339437799038933
KDEKRKLERQR	11	Unmodified	_KDEKRKLERQR_					0	0	0		SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.958251953125	3	495.958462	1484.85356	0.50104	0.00024849	0.75608	0.00037499	1.2571	0.00062348	496.293303089004	96.369	1.1246	96.369	95.826	96.95	0					100	55	2	0	0	0	0.41693	4	24408	24408;24453;24506;24553		0.45452	0.35968	1	419810			8588	13368	5741	5784	11724;11725;11726;11727	11724					0.13052490343170575
KDEKRKLERQR	11	Unmodified	_KDEKRKLERQR_					0	0	0		SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2933654785156	3	495.958462	1484.85356	0.6204	0.00030769	0.76687	0.00038034	1.3873	0.00068803	496.29319405595805	97.025	0.56663	97.025	96.872	97.438	0					61	27	3	0	0	0	0.41309	2	24641	24598;24641		1.3296	0.87513	1	162710			8589	13368	5741	5784	11728;11729	11729					0.13052490343170575
KDEKRKLERQR	11	Unmodified	_KDEKRKLERQR_					0	0	0		SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.9587097167969	3	495.958462	1484.85356	0.51232	0.00025409	0.78996	0.00039179	1.3023	0.00064588	495.95866189251626	96.307	1.4826	96.347	95.876	97.359	0.039772					168	76	3	0	0	0	0.40824	4	24451	24237;24282;24325;24451		2.4348	2.0681	1	267480			8590	13368	5741	5784	11730;11731;11732;11733	11733					0.13052490343170575
KDFISRFE	8	Unmodified	_KDFISRFE_					0	0	0		ENSG00000213366|ENST00000241337|GSTM2;ENSG00000134184|ENST00000309851|GSTM1;ENSG00000168765|ENST00000369836|GSTM4;nc|ENSG00000213366|P28161-2|GSTM2;ENST00000493171.5_1_1:110201318-110203873:+|nuORF;ENST00000496578.3_1_1:110213770-110217455:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;ENSG00000134201|ENST00000256593|GSTM5;nc|ENSG00000168765|Q03013-2|GSTM4;ENST00000405166.1_1_6:111368073-111368568:-|nuORF;ENST00000483153.1_1_1:110257451-110260045:+|nuORF;ENST00000493395.1_1_1:110201441-110203811:+|nuORF;ENST00000492718.1_1_1:110257466-110258024:+|nuORF	ENSG00000213366|ENST00000241337|GSTM2	ENSG00000213366|ENST00000241337|GSTM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2901611328125	2	521.271824	1040.5291	0.22043	0.00011491	-0.43086	-0.0002246	-0.21043	-0.00010969	521.2717350671462	52.195	1.5946	52.262	51.735	53.33	0.067173					176	64	5	0	0	0	0.45211	1	10994	10994		19.257	2.3147	1	2271500			8591	5543	5742	5785	11734	11734					0.010451699261693648
KDFTNYFGH	9	Unmodified	_KDFTNYFGH_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7607421875	2	564.759081	1127.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.033	1	24.033	23.533	24.533	0								0	0	0	0.28631	1	2573	2573		1.8442	0.19162	1				8592	809	5743	5786	11735	11735					-0.055043045962293036
KDGEVDRNFD	10	Unmodified	_KDGEVDRNFD_					0	0	0		ARVCF|p.M636V|1|0.17|ENSG00000099889|chr22:19975740-19975740|T/C|missense_variant	ARVCF|p.M636V|1|0.17|ENSG00000099889|chr22:19975740-19975740|T/C|missense_variant	ARVCF|p.M636V|1|0.17|ENSG00000099889|chr22:19975740-19975740|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.25927734375	2	597.772916	1193.53128	-0.00018122	-1.0833E-07	3.4412	0.002057	3.441	0.0020569	597.7747543424858	73.419	0.12215	73.419	73.342	73.464	0					7	4	2	0	0	0	0.31761	1	17437	17437		5.2969	0.96765	1	128180			8593	55	5744	5787	11736	11736					-0.05774446126679322
KDHCCMLEF	9	Unmodified	_KDHCCMLEF_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.23046875	2	563.22993	1124.44531	0.62881	0.00035417	0.43894	0.00024723	1.0678	0.00060139	563.2301388792127	65.072	1.9671	65.072	64.485	66.452	0					142	71	3	0	0	0	0.17247	1	14910	14910		21.747	2.3076	1	570240			8594	5582	5745	5788	11737	11737					-0.11193768829048167
KDHPRAQANLP	11	Unmodified	_KDHPRAQANLP_					0	0	0		ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL;ENSG00000187994|ENST00000591812|RINL	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2277526855469	3	416.226549	1245.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.458	1	75.458	74.958	75.958	0								0	0	0	0.33908	1	18073	18073		0.36667	0	1				8595	5140	5746	5789	11738	11738					0.044815248891382
KDHVDQLI	8	Unmodified	_KDHVDQLI_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.2650146484375	2	484.263999	966.513445	0.11774	5.7016E-05	0.0047625	2.3063E-06	0.1225	5.9323E-05	484.2640629802385	47.614	0.50531	47.614	47.372	47.877	0					27	16	2	0	0	0	0.53666	1	9650	9650		3.5965	0.31518	1	138330	+		8596	9730	5747	5790	11739	11739					0.028848834091377284
KDILIWIG	8	Unmodified	_KDILIWIG_					0	0	0			REV__ENST00000597852.5_1_19:49838763-49839342:+|nuORF	REV__ENST00000597852.5_1_19:49838763-49839342:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7492370605469	2	479.292028	956.569503	-0.19358	-9.2784E-05	-4.2927	-0.0020574	-4.4862	-0.0021502	479.28981692372815	46.194	0.26228	46.28	46.103	46.365	0.085617					10	8	2	0	0	0	0.35759	1	9049	9049		9.3474	0	1	36563	+		8597	8520	5748	5791	11740	11740					0.08948136316610089
KDILVQWLY	9	Unmodified	_KDILVQWLY_					0	0	0		ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3330078125	2	589.334424	1176.6543	0.39035	0.00023004	1.1455	0.0006751	1.5359	0.00090514	589.3342632053756	58.476	1.1964	58.547	58.322	59.518	0.070477					89	44	4	0	0	0	0.24021	1	12871	12871		13.906	0.29118	1	934190			8598	6946	5749	5792	11741	11741					0.07303462062577637
KDKFQKILT	9	Unmodified	_KDKFQKILT_					0	0	0			REV__nc|ENSG00000141424|Q13433-2|SLC39A6	REV__nc|ENSG00000141424|Q13433-2|SLC39A6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.85302734375	2	560.839874	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.231	1	49.231	48.731	49.731	0								0	0	0	0.22204	1	10079	10079		14.838	0.93222	1		+		8599	9397	5750	5793	11742	11742					0.11014864436833705
KDLAHVIPIY	10	Unmodified	_KDLAHVIPIY_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3299560546875	2	584.839874	1167.66519	0.80721	0.00047209	0.096052	5.6175E-05	0.90327	0.00052827	584.8404550585193	55.368	0.12785	55.433	55.335	55.463	0.065128					9	4	3	0	0	0	0.31565	1	11820	11820		12.241	2.8575	1	80188	+		8600	12097	5751	5794	11743	11743					0.08806864436860451
KDMNFPVF	8	Unmodified	_KDMNFPVF_					0	0	0		ENST00000464428.2_1_1:177936859-177991802:-|nuORF	ENST00000464428.2_1_1:177936859-177991802:-|nuORF	ENST00000464428.2_1_1:177936859-177991802:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.25372314453125	2	499.244221	996.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.384	1	65.384	64.884	65.884	0								0	0	0	0.38822	1	15002	15002		8.5933	0	1				8601	6627	5752	5795	11744	11744					-0.024489598659329204
KDMQEYFDF	9	Unmodified	_KDMQEYFDF_					0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.7577514648438	2	611.757889	1221.50123	0.3463	0.00021185	-0.18191	-0.00011129	0.16439	0.00010056	611.7577020945803	63.4	0.98124	63.4	63.073	64.054	0					67	35	3	0	0	0	0.2125	2	14463	14463;14534		17.113	1.8644	1	421090	+		8602	9927	5753	5796	11745;11746	11745					-0.10066521116232252
KDMQEYFDF	9	Unmodified	_KDMQEYFDF_					0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.757568359375	2	611.757889	1221.50123	0.48287	0.0002954	-0.73473	-0.00044948	-0.25187	-0.00015408	611.7575371536981	65.141	1.3494	65.141	64.382	65.732	0					87	49	3	0	0	0	0.11547	5	14952	14848;14906;14952;15000;15046		29.082	2.8134	1	383040	+		8603	9927	5753	5796	11747;11748;11749;11750;11751	11749					-0.10066521116232252
KDMQEYFDF	9	Unmodified	_KDMQEYFDF_					0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7577514648438	2	611.757889	1221.50123	0.40887	0.00025013	-0.67313	-0.00041179	-0.26426	-0.00016167	611.7574898742371	65.101	1.4479	65.169	64.428	65.876	0.068916					92	55	3	0	0	0	0.16392	5	14864	14700;14723;14766;14817;14864		22.736	2.3217	1	474010	+		8604	9927	5753	5796	11752;11753;11754;11755;11756	11756					-0.10066521116232252
KDNIEEALL	9	Unmodified	_KDNIEEALL_					0	0	0		ENST00000484061.5_1_2:47221411-47251446:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7911987304688	2	522.782222	1043.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.384	1	91.384	90.884	91.884	0								0	0	0	0.12644	1	22925	22925		29.082	3.6823	1				8605	735	5754	5797	11757	11757					0.029857155152058112
KDPLHTSNL	9	Unmodified	_KDPLHTSNL_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7742919921875	2	512.774731	1023.53491	-0.57708	-0.00029591	-0.37064	-0.00019005	-0.94772	-0.00048597	512.7744881967337	41.746	0.44734	41.746	41.52	41.968	0					39	16	3	0	0	0	0.30005	1	7871	7871		6.7232	0	1	171810	+		8606	9384	5755	5798	11758	11758					0.024082684378413433
KDQFFKNW	8	Unmodified	_KDQFFKNW_					0	0	0			REV__nc|ENSG00000131374|Q92609|TBC1D5	REV__nc|ENSG00000131374|Q92609|TBC1D5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7904663085938	2	556.779816	1111.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.587	1	51.657	51.157	52.157	0.069874								0	0	0	0.38822	1	10662	10662		4.756	0	1		+		8607	9082	5756	5799	11759	11759					-0.006231238369082348
KDRDMDLT	8	Unmodified	_KDRDMDLT_					0	0	0		CTNND1|p.A463D|1|0.34|ENSG00000198561|chr11:57802164-57802164|C/A|missense_variant	CTNND1|p.A463D|1|0.34|ENSG00000198561|chr11:57802164-57802164|C/A|missense_variant	CTNND1|p.A463D|1|0.34|ENSG00000198561|chr11:57802164-57802164|C/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2363586425781	2	497.237124	992.459695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.57	1	101.61	101.11	102.11	0.042656								0	0	0	0.38822	1	25867	25867		2.0598	0.21551	1				8608	254	5757	5800	11760	11760					-0.036836570848890915
KDRGHDGRF	9	Unmodified	_KDRGHDGRF_					0	0	0			REV__ENST00000263277.7_1_19:48244710-48244917:+|nuORF	REV__ENST00000263277.7_1_19:48244710-48244917:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2738037109375	2	544.273221	1086.53189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.97	1	104.97	104.47	105.47	0								0	0	0	0.28631	1	27028	27028		1.8442	1.0506	1		+		8609	11241	5758	5801	11761	11761					-0.007915618962897497
KDSLLIFNE	9	Unmodified	_KDSLLIFNE_					0	0	0		tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1	tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1	tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2607421875	2	539.792589	1077.57063	0.047733	2.5766E-05	-0.8146	-0.00043971	-0.76686	-0.00041395	539.7923191055679	26.859	0.51863	26.946	26.738	27.257	0.0867					62	35	3	0	0	0	0.25921	1	3258	3258		1.4819	0	1	32627			8610	13681	5759	5802	11762	11762					0.03494305894832905
KDSLVKVAP	9	Unmodified	_KDSLVKVAP_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7920837402344	2	478.792392	955.570232	-0.34712	-0.0001662	0.1302	6.2341E-05	-0.21692	-0.00010386	478.79231548601877	26.032	0.37991	26.124	25.94	26.32	0.091507					55	33	2	0	0	0	0.33849	1	2992	2992		1.6526	0.17072	1	44532			8611	5700	5760	5803	11763	11763					0.09066930965650499
KDSNLSFEEF	10	Unmodified	_KDSNLSFEEF_					0	0	0		ENST00000487557.2_1_9:5335253-5339295:-|nuORF;ENSG00000107018|ENST00000223862|RLN1	ENST00000487557.2_1_9:5335253-5339295:-|nuORF	ENST00000487557.2_1_9:5335253-5339295:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.85614013671875	3	405.855787	1214.54553	0.65726	0.00026675	0.21659	8.7905E-05	0.87385	0.00035466	405.8558138762279	55.639	0.73617	55.639	55.38	56.116	0					67	25	4	0	0	0	0.39662	1	12087	12087		7.4771	1.2427	1	498220			8612	1540	5761	5804	11764	11764					-0.05315793698378002
KDSQPWEQ	8	Unmodified	_KDSQPWEQ_					0	0	0		CON__Q03247	CON__Q03247	CON__Q03247	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.23614501953125	2	509.235439	1016.45632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.236	1	95.236	94.736	95.736	0								0	0	0	0.38822	1	24097	24097		1.8442	0	1			+	8613	226	5762	5805	11765	11765					-0.05124583867234378
KDVRVCETCS	10	Unmodified	_KDVRVCETCS_					0	0	0			REV__nc|ENSG00000132470|P16144-4|ITGB4	REV__nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2615966796875	2	570.262816	1138.51108	-0.05642	-3.2174E-05	-2.6457	-0.0015087	-2.7021	-0.0015409	570.2612453730982	33.735	0.54337	33.735	33.548	34.091	0					26	19	2	0	0	0	0.46899	1	5473	5473		1.1933	0.12188	1	28585	+		8614	9118	5763	5806	11766	11766					-0.05263656382476256
KDVRVCETCS	10	Unmodified	_KDVRVCETCS_					0	0	0			REV__nc|ENSG00000132470|P16144-4|ITGB4	REV__nc|ENSG00000132470|P16144-4|ITGB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2936401367188	2	570.262816	1138.51108	-0.05642	-3.2174E-05	-2.6457	-0.0015087	-2.7021	-0.0015409	570.2612453730982	33.735	0.54337	33.735	33.548	34.091	0					26	19	2	0	0	0	0.31824	1	5490	5490		2.4985	0.65425	1	28585	+		8615	9118	5763	5806	11767	11767					-0.05263656382476256
KDWEWGKDD	9	Unmodified	_KDWEWGKDD_					0	0	0		nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A	nc|ENSG00000169918|Q8TE49|OTUD7A	nc|ENSG00000169918|Q8TE49|OTUD7A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3343505859375	2	589.759278	1177.504	0.1679	9.902E-05	0.60357	0.00035596	0.77147	0.00045498	589.7596956638287	58.347	0.28592	58.347	58.256	58.542	0					19	10	2	0	0	0	0.24635	1	12910	12910		6.7232	0	1	120960			8616	4365	5764	5807	11768	11768					-0.07764929667041542
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-3|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-2|TPM1;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF	ENSG00000198467|ENST00000645482|TPM2	ENSG00000198467|ENST00000645482|TPM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7694702148438	2	540.769645	1079.52474	0.16491	8.9179E-05	-0.27797	-0.00015032	-0.11306	-6.1139E-05	540.769362866216	22.297	0.39591	22.399	22.275	22.671	0.10178					78	34	3	0	0	0	0.28919	1	1977	1977		8.1555	0	1	85944		+	8617	233	5765	5808	11769	11769					-0.011843392873743142
KEAHYFSF	8	Unmodified	_KEAHYFSF_					0	0	0		ENST00000261483.4_1_5:109202701-109202797:+|nuORF	ENST00000261483.4_1_5:109202701-109202797:+|nuORF	ENST00000261483.4_1_5:109202701-109202797:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7448120117188	2	514.745442	1027.47633	0.8525	0.00043882	-0.59395	-0.00030574	0.25854	0.00013308	514.7449698857685	84.661	0.50757	84.661	84.507	85.014	0					51	23	3	0	0	0	0.32977	1	20956	20956		32.305	0	1	890240			8618	5866	5766	5809	11770	11770					-0.0363078813663833
KEAYALFQFF	10	Unmodified	_KEAYALFQFF_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.8730163574219	3	421.88513	1262.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.969	1	48.049	47.549	48.549	0.080029								0	0	0	0.33681	1	9567	9567		1.9064	0	1				8619	3918	5767	5810	11771	11771					0.012748716828809847
KEDIPGRHSY	10	Unmodified	_KEDIPGRHSY_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3017578125	2	601.301644	1200.58874	0.12848	7.7253E-05	0.051585	3.1018E-05	0.18006	0.00010827	601.3017454060771	22.55	0.41132	22.651	22.508	22.919	0.10178					70	40	2	0	0	0	0.46208	1	2063	2063		2.4985	1.0166	1	30833			8620	3940	5768	5811	11772	11772					-0.0035355913041712483
KEDKPLKV	8	Unmodified	_KEDKPLKV_					0	0	0			REV__tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1	REV__tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7920227050781	2	478.792392	955.570232	-0.44327	-0.00021223	0.044975	2.1534E-05	-0.39829	-0.0001907	478.7923134163876	26.162	0.40714	26.162	26.011	26.418	0					65	34	2	0	0	0	0.53926	1	3196	3196		1.8442	0	1	38198	+		8621	13038	5769	5812	11773	11773					0.09066930965661868
KEDRPKVP	8	Unmodified	_KEDRPKVP_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.3586730957031	2	484.779816	967.545079	-0.51107	-0.00024775	0.0096461	4.6762E-06	-0.50142	-0.00024308	484.77982721429163	23.524	0.2793	23.524	23.412	23.691	0					28	27	2	0	0	0	0.3576	1	2436	2436		2.0598	2.0598	1	13674			8622	3351	5770	5813	11774	11774					0.06000876163091107
KEDTPVRH	8	Unmodified	_KEDTPVRH_					0	0	0		ENSG00000180964|ENST00000372685|TCEAL8	ENSG00000180964|ENST00000372685|TCEAL8	ENSG00000180964|ENST00000372685|TCEAL8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.25897216796875	2	491.259248	980.503943	-0.22902	-0.00011251	-0.20028	-9.839E-05	-0.4293	-0.0002109	491.2594703993397	23.919	3.2751	23.919	23.657	26.932	0					623	261	5	0	0	0	0.53858	1	3304	3304		2.3027	0	1	3789000			8623	4824	5771	5814	11775	11775					0.012911151236153273
KEDTPVRH	8	Unmodified	_KEDTPVRH_					0	0	0		ENSG00000180964|ENST00000372685|TCEAL8	ENSG00000180964|ENST00000372685|TCEAL8	ENSG00000180964|ENST00000372685|TCEAL8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2590637207031	2	491.259248	980.503943	-0.024674	-1.2121E-05	-0.2905	-0.00014271	-0.31518	-0.00015483	491.25944100011304	23.734	2.802	23.833	23.526	26.328	0.099739					550	251	5	0	0	0	0.53858	3	2834	2834;2893;3018		2.3027	0	1	4289800			8624	4824	5771	5814	11776;11777;11778	11776					0.012911151236153273
KEEAPSYRT	9	Unmodified	_KEEAPSYRT_					0	0	0		SULF2-PHF20|1|fusion;ENSG00000025293|ENST00000374012|PHF20	SULF2-PHF20|1|fusion	SULF2-PHF20|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7694702148438	2	540.769645	1079.52474	-0.22231	-0.00012022	0.14128	7.6399E-05	-0.081034	-4.3821E-05	540.769555138411	22.47	0.67953	22.47	22.313	22.993	0					106	56	3	0	0	0	0.31389	3	2164	2126;2164;2181		4.897	0	1	70171			8625	489	5772	5815	11779;11780;11781	11780					-0.011843392873743142
KEEAPSYRT	9	Unmodified	_KEEAPSYRT_					0	0	0		SULF2-PHF20|1|fusion;ENSG00000025293|ENST00000374012|PHF20	SULF2-PHF20|1|fusion	SULF2-PHF20|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7694091796875	2	540.769645	1079.52474	0.16491	8.9179E-05	-0.27797	-0.00015032	-0.11306	-6.1139E-05	540.769362866216	22.297	0.39591	22.399	22.275	22.671	0.10178					78	34	3	0	0	0	0.32831	1	2012	2012		2.9952	0	1	85944			8626	489	5772	5815	11782	11782					-0.011843392873743142
KEEDEQLQN	9	Unmodified	_KEEDEQLQN_					0	0	0		ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.261962890625	2	566.759475	1131.5044	0.13103	7.4265E-05	-1.7833	-0.0010107	-1.6523	-0.00093645	566.7565802838322	52.578	1.3721	52.578	52.015	53.388	0					114	50	4	0	0	0	0.28919	1	10935	10935		8.1555	3.8263	1	809210			8627	3515	5773	5816	11783	11783					-0.05609554737839062
KEEGKDRTE	9	Unmodified	_KEEGKDRTE_					0	0	0			REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF	REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2718505859375	2	546.27001	1090.52547	0.13054	7.1312E-05	3.4309	0.0018742	3.5614	0.0019455	546.271831893465	35.438	0.2773	35.438	35.259	35.537	0					16	9	3	0	0	0	0.28919	1	5929	5929		8.1555	1.0538	1	31910	+		8628	11232	5774	5817	11784	11784					-0.01617544638338586
KEEGKDRTE	9	Unmodified	_KEEGKDRTE_					0	0	0			REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF	REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2728881835938	2	546.27001	1090.52547	0.15812	8.6378E-05	4.3174	0.0023585	4.4755	0.0024449	546.2723733165172	35.36	0.23047	35.439	35.339	35.569	0.078827					15	8	2	0	0	0	0.18398	1	5780	5780		20.415	6.5085	1	28508	+		8629	11232	5774	5817	11785	11785					-0.01617544638338586
KEEGKDRTE	9	Unmodified	_KEEGKDRTE_					0	0	0			REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF	REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	546.27001	1090.52547	0.13054	7.1312E-05	3.4309	0.0018742	3.5614	0.0019455	546.271831893465	35.438	0.2773	35.438	35.259	35.537	0	-0.00025859	-0.00042498	NaN	20.415	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31910	+		8630	11232	5774	5817							-0.01617544638338586
KEEGKDRTE	9	Unmodified	_KEEGKDRTE_					0	0	0			REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF	REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	546.27001	1090.52547	0.15812	8.6378E-05	4.3174	0.0023585	4.4755	0.0024449	546.2723733165172	35.36	0.23047	35.439	35.339	35.569	0.078827	0.00025859	0.00054358	NaN	20.415	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28508	+		8631	11232	5774	5817							-0.01617544638338586
KEEKEVETIF	10	Unmodified	_KEEKEVETIF_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3092041015625	2	626.326993	1250.63943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.213	1	95.213	94.713	95.713	0								0	0	0	0.33892	1	24090	24090		1.4819	0	1		+		8632	8857	5775	5818	11786	11786					0.024139254039027946
KEEKGKYIDF	10	Unmodified	_KEEKGKYIDF_					0	0	0		tr|U7SQX8|U7SQX8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01842PE=4SV=1	tr|U7SQX8|U7SQX8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01842PE=4SV=1	tr|U7SQX8|U7SQX8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01842PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.55572509765625	3	419.555561	1255.64485	-0.17807	-7.471E-05	0.33347	0.00013991	0.1554	6.52E-05	419.5558005380661	43.699	1.2098	43.788	43.186	44.396	0.088924					148	42	4	0	0	0	0.4101	1	8438	8438		6.6235	1.425	1	481420			8633	13535	5776	5819	11787	11787					0.027256489863702882
KEFELFHNQV	10	Unmodified	_KEFELFHNQV_					0	0	0		MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant;nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM	MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	430.8887634277344	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.964	1	60.964	60.464	61.464	0								0	0	0	0.33793	1	13650	13650		2.6312	0	1				8634	5702	5777	5820	11788	11788					0.0072018456346540916
KEFEPKVTRL	10	Unmodified	_KEFEPKVTRL_					0	0	0			REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.220458984375	3	416.243317	1245.70812	0.37219	0.00015492	-0.81167	-0.00033785	-0.43948	-0.00018293	416.2427323547661	48.743	0.43088	48.743	48.399	48.83	0					21	14	2	0	0	0	0.31721	1	9921	9921		7.9454	2.8979	1	92099	+		8635	8743	5778	5821	11789	11789					0.09509634494270358
KEFEPKVTRL	10	Unmodified	_KEFEPKVTRL_					0	0	0			REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.220458984375	3	416.243317	1245.70812	0.21467	8.9355E-05	0.14058	5.8514E-05	0.35525	0.00014787	416.24327751035304	48.327	0.7939	48.407	47.901	48.694	0.080032					33	27	2	0	0	0	0.31721	1	9762	9762		7.9454	2.8979	1	47304	+		8636	8743	5778	5821	11790	11790					0.09509634494270358
KEFSEQEAK	9	Unmodified	_KEFSEQEAK_					0	0	0			REV__ENST00000592611.5_1_18:34415331-34809581:+|nuORF	REV__ENST00000592611.5_1_18:34415331-34809581:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.26708984375	2	548.269478	1094.5244	0.42629	0.00023372	-0.18371	-0.00010072	0.24258	0.000133	548.2694175464642	53.527	1.1947	53.527	53.234	54.429	0					153	45	5	0	0	0	0.31389	1	11315	11315		4.897	0	1	6997200	+		8637	9627	5779	5822	11791	11791					-0.019077590072356543
KEGGCGEGA	9	Unmodified	_KEGGCGEGA_					0	0	0			REV__ENST00000368324.4_1_1:155851301-155851535:+|nuORF	REV__ENST00000368324.4_1_1:155851301-155851535:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1700744628906	2	404.16871	806.322867	-0.036481	-1.4745E-05	2.4326	0.00098316	2.3961	0.00096842	404.17009284753357	71.907	3.2036	71.963	71.649	74.853	0.055931					273	116	5	0	0	0	0.32112	1	16826	16826		3.9444	1.3669	1	12715000	+		8638	11573	5780	5823	11792	11792					-0.08804146244585809
KEGIEWEFI	9	Unmodified	_KEGIEWEFI_					0	0	0		MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13;ENSG00000264424|ENST00000255381|MYH4	MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant	MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.793212890625	2	575.792589	1149.57063	0.47003	0.00027064	-0.55263	-0.0003182	-0.082592	-4.7556E-05	575.7920796423161	83.271	0.84522	83.271	82.872	83.717	0					38	28	2	0	0	0	0.20194	1	20482	20482		24.021	2.2739	1	180140			8639	376	5781	5824	11793	11793					0.0018230589485028759
KEGLDIYKKF	10	Unmodified	_KEGLDIYKKF_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	414.8681335449219	3	414.236051	1239.68632	0.10826	4.4843E-05	-0.25313	-0.00010485	-0.14487	-6.001E-05	414.2359046116893	39.854	0.62704	39.854	39.633	40.26	0					47	21	3	0	0	0	0.31795	1	7285	7285		4.7159	0.59929	1	169480			8640	7460	5782	5825	11794	11794					0.0760682974566862
KEGLDIYKKF	10	Unmodified	_KEGLDIYKKF_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	414.8681335449219	3	414.236051	1239.68632	-0.12875	-5.3334E-05	-0.001073	-4.4446E-07	-0.12983	-5.3778E-05	414.2360116926637	39.742	0.58028	39.83	39.583	40.163	0.088562					51	21	4	0	0	0	0.31702	1	7116	7116		9.2438	3.8411	1	153160			8641	7460	5782	5825	11795	11795					0.0760682974566862
KEIASIYQK	9	Unmodified	_KEIASIYQK_					0	0	0			REV__nc|ENSG00000123106|Q7Z6B0-2|CCDC91	REV__nc|ENSG00000123106|Q7Z6B0-2|CCDC91	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3082885742188	2	540.308406	1078.60226	-0.27007	-0.00014592	0.10595	5.7248E-05	-0.16411	-8.8671E-05	540.3083236138152	20.227	0.49015	20.227	20.083	20.573	0					99	48	3	0	0	0	0.30397	1	1531	1531		6.2058	0.47393	1	84689	+		8642	8927	5783	5826	11796	11796					0.0661029864882039
KEIEKRMERIE	11	Unmodified	_KEIEKRMERIE_					0	0	0			REV__ENST00000547963.1_1_12:114183225-114183294:-|nuORF	REV__ENST00000547963.1_1_12:114183225-114183294:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2819519042969	3	487.601176	1459.7817	0.03633	1.7715E-05	-3.5873	-0.0017492	-3.551	-0.0017315	487.59811855821357	50.075	0.13303	50.075	49.996	50.129	0					6	4	2	0	0	0	0.31091	1	10346	10346		2.4348	0	1	33646	+		8643	12424	5784	5827	11797	11797					0.07019814874456642
KEIFSNFF	8	Unmodified	_KEIFSNFF_					0	0	0			REV__tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	REV__tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.263427734375	2	516.263468	1030.51238	0.54607	0.00028192	-0.057269	-2.9566E-05	0.4888	0.00025235	516.2632474303163	99.461	0.36884	99.504	99.251	99.62	0.042839					42	23	2	0	0	0	0.51967	1	25253	25253		10.074	0	1	132070	+		8644	13248	5785	5828	11798	11798					-0.0016533095977138146
KEIFVFVIVVF	11	Unmodified	_KEIFVFVIVVF_					0	0	0			REV__ENSG00000122863|ENST00000373115|CHST3	REV__ENSG00000122863|ENST00000373115|CHST3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	447.2873840332031	3	447.272325	1338.79515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.55	1	109.57	109.07	110.07	0.019402								0	0	0	0.33799	1	28019	28019		1.4551	0.12547	1		+		8645	8923	5786	5829	11799	11799					0.13930040715968062
KEIMQHRFF	9	Unmodified	_KEIMQHRFF_					0	0	0		ENST00000557552.1_1_14:105238371-105239528:-|nuORF;nc|ENSG00000142208|P31749-2|AKT1;ENSG00000142208|ENST00000649815|AKT1	ENST00000557552.1_1_14:105238371-105239528:-|nuORF	ENST00000557552.1_1_14:105238371-105239528:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3230590820312	2	618.321325	1234.6281	-0.2226	-0.00013764	0.003605	2.2291E-06	-0.219	-0.00013541	618.3213262884395	71.775	1.269	71.83	71.54	72.809	0.055939					169	44	5	0	0	0	0.20358	1	17083	17083		18.146	6.5061	1	15711000			8646	3096	5787	5830	11800	11800					0.020168696194104996
KEIQNRLT	8	Unmodified	_KEIQNRLT_					0	0	0		tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1	tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1	tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2908630371094	2	501.290548	1000.56654	0.28404	0.00014239	-0.55078	-0.0002761	-0.26674	-0.00013371	501.290320877473	83.255	0.71001	83.277	82.931	83.641	0.021744					53	24	3	0	0	0	0.53279	1	20334	20334		6.2058	0.47393	1	233480			8647	13716	5788	5831	11801	11801					0.06628261191792717
KEIQRNLYNK	10	Unmodified	_KEIQRNLYNK_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.91302490234375	3	435.913971	1304.72008	0.019427	8.4684E-06	-0.57747	-0.00025173	-0.55805	-0.00024326	435.9136192744749	29.737	0.56212	29.737	29.535	30.097	0					52	26	3	0	0	0	0.46688	1	4227	4227		1.5923	0.13716	1	42227	+		8648	9404	5789	5832	11802	11802					0.07991251237467623
KEIQRNLYNK	10	Unmodified	_KEIQRNLYNK_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.91375732421875	3	435.913971	1304.72008	-0.23308	-0.0001016	-0.33454	-0.00014583	-0.56762	-0.00024743	435.91381581991965	29.663	0.46358	29.741	29.548	30.012	0.078289					59	26	3	0	0	0	0.46688	1	4065	4065		1.5923	0.13716	1	71264	+		8649	9404	5789	5832	11803	11803					0.07991251237467623
KEIQRNLYNK	10	Unmodified	_KEIQRNLYNK_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	435.913971	1304.72008	-0.23308	-0.0001016	-0.33454	-0.00014583	-0.56762	-0.00024743	435.91381581991965	29.663	0.46358	29.741	29.548	30.012	0.078289	0.0023355	8.2267E-05	NaN	1.5923	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71264	+		8650	9404	5789	5832							0.07991251237467623
KEIRQYELE	9	Unmodified	_KEIRQYELE_					0	0	0			REV__nc|ENSG00000163617|Q8NCU4-2|CCDC191	REV__nc|ENSG00000163617|Q8NCU4-2|CCDC191	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.3191528320312	2	604.319502	1206.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.792	1	45.792	45.292	46.292	0								0	0	0	0.28527	1	9042	9042		2.0598	0	1		+		8651	9945	5790	5833	11804	11804					0.02940478326536322
KEIYSDPLF	9	Unmodified	_KEIYSDPLF_					0	0	0			REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3088989257812	2	556.28714	1110.55973	0.22712	0.00012634	0.34443	0.0001916	0.57155	0.00031795	556.2873432326013	73.481	0.66536	73.481	73.254	73.92	0					48	23	3	0	0	0	0.25979	1	17514	17514		11.64	0.52583	1	329390	+		8652	13241	5791	5834	11805	11805					0.008869035205634646
KEKKQYRRKKQ	11	Unmodified	_KEKKQYRRKKQ_					0	0	0			REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7530212402344	3	507.310836	1518.91068	0.51257	0.00026003	-1.8075	-0.00091697	-1.2949	-0.00065693	507.6442198035765	98.055	0.42815	98.055	97.929	98.357	0					27	22	2	0	0	0	0.31101	1	24996	24996		0.094841	0.021578	1	55586	+		8653	11301	5792	5835	11806	11806					0.17197957619532644
KEKMKKKTI	9	Unmodified	_KEKMKKKTI_					0	0	0		ENST00000522352.5_1_8:109214066-109214144:-|nuORF	ENST00000522352.5_1_8:109214066-109214144:-|nuORF	ENST00000522352.5_1_8:109214066-109214144:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7747802734375	2	567.357376	1132.7002	0.18269	0.00010365	0.44213	0.00025085	0.62481	0.00035449	567.3576223159187	60.58	0.51057	60.654	60.462	60.973	0.073418					21	17	2	0	0	0	0.25746	1	13482	13482		3.2813	0.28607	1	80803			8654	6968	5793	5836	11807	11807					0.1391578397315243
KEKMKKKTI	9	Unmodified	_KEKMKKKTI_					0	0	0		ENST00000522352.5_1_8:109214066-109214144:-|nuORF	ENST00000522352.5_1_8:109214066-109214144:-|nuORF	ENST00000522352.5_1_8:109214066-109214144:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	567.357376	1132.7002	0.38409	0.00021792	0.81999	0.00046522	1.2041	0.00068314	567.3577474554455	60.687	0.40852	60.687	60.533	60.942	0	0.016637	0.00014524	NaN	3.2813	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90179			8655	6968	5793	5836							0.1391578397315243
KEKRARFSEL	10	Unmodified	_KEKRARFSEL_					0	0	0		ANKAR|p.R602Kfs*13|1|0.22|ENSG00000151687|chr2:189705112-189705113|-/A|frameshift_variant;nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR	ANKAR|p.R602Kfs*13|1|0.22|ENSG00000151687|chr2:189705112-189705113|-/A|frameshift_variant	ANKAR|p.R602Kfs*13|1|0.22|ENSG00000151687|chr2:189705112-189705113|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.3619995117188	2	632.362036	1262.70952	0.33834	0.00021395	-0.62183	-0.00039322	-0.2835	-0.00017927	632.3618103004964	104.55	0.43149	104.59	104.36	104.8	0.034004					78	41	3	0	0	0	0.44938	1	26734	26734		4.897	1.3005	1	169110			8656	33	5794	5837	11808	11808					0.08867268583026089
KELIQLIKQR	10	Unmodified	_KELIQLIKQR_					0	0	0		ENST00000433596.1_1_2:43908485-43908692:-|nuORF;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	ENST00000433596.1_1_2:43908485-43908692:-|nuORF	ENST00000433596.1_1_2:43908485-43908692:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.910400390625	2	634.906079	1267.79761	0.24458	0.00015528	1.8401	0.0011683	2.0846	0.0013236	634.9072186241932	108.51	0.19386	108.53	108.48	108.67	0.022224					51	28	3	0	0	0	0.45794	1	27782	27782		3.2813	0.28607	1	1734400			8657	1391	5795	5838	11809	11809					0.17441889173642267
KELLQLLL	8	Unmodified	_KELLQLLL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.8397521972656	2	485.320786	968.627018	0.028591	1.3876E-05	1.0916	0.00052977	1.1202	0.00054365	485.3210743020684	111.98	0.41211	111.99	111.81	112.23	0.014595					90	51	2	0	0	0	0.3576	1	28583	28583		2.3027	0	1	1066600			8658	4777	5796	5839	11810	11810					0.1414497852219938
KELNLGQR	8	Unmodified	_KELNLGQR_					0	0	0			REV__ENST00000547048.5_1_12:53861836-53862013:+|nuORF	REV__ENST00000547048.5_1_12:53861836-53862013:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.27752685546875	2	479.277441	956.540328	0.44599	0.00021375	-0.29029	-0.00013913	0.15569	7.462E-05	479.277168433421	81.893	0.76266	81.893	81.601	82.364	0					54	26	3	0	0	0	0.53557	1	20015	20015		4.3292	4.3292	1	193570	+		8659	12419	5797	5840	11811	11811					0.060319920203255606
KELNQRIG	8	Unmodified	_KELNQRIG_					0	0	0		nc|ENSG00000166669|Q5U623-2|ATF7IP2;ENSG00000166669|ENST00000562102|ATF7IP2	nc|ENSG00000166669|Q5U623-2|ATF7IP2	nc|ENSG00000166669|Q5U623-2|ATF7IP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2774963378906	2	479.277441	956.540328	0.071114	3.4083E-05	0.16688	7.9981E-05	0.23799	0.00011406	479.2774235118305	76.659	0.90096	76.659	76.331	77.231	0					81	31	3	0	0	0	0.53494	2	18528	18387;18528		4.756	2.5775	1	410100			8660	4171	5798	5841	11812;11813	11813					0.060319920203255606
KELNQRIG	8	Unmodified	_KELNQRIG_					0	0	0		nc|ENSG00000166669|Q5U623-2|ATF7IP2;ENSG00000166669|ENST00000562102|ATF7IP2	nc|ENSG00000166669|Q5U623-2|ATF7IP2	nc|ENSG00000166669|Q5U623-2|ATF7IP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2772521972656	2	479.277441	956.540328	0.10733	5.1439E-05	0.10607	5.0836E-05	0.2134	0.00010228	479.2773625245644	76.7	0.89496	76.739	76.313	77.207	0.03923					80	32	3	0	0	0	0.53494	1	18358	18358		4.756	0.81161	1	425500			8661	4171	5798	5841	11814	11814					0.060319920203255606
KELPDHYR	8	Unmodified	_KELPDHYR_					0	0	0		nc|ENSG00000188676|Q6ZQW0-2|IDO2;ENSG00000188676|ENST00000502986|IDO2	nc|ENSG00000188676|Q6ZQW0-2|IDO2	nc|ENSG00000188676|Q6ZQW0-2|IDO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2753295898438	2	529.274898	1056.53524	-0.051071	-2.7031E-05	0.28602	0.00015138	0.23495	0.00012435	529.274921566057	31.366	0.44869	31.44	31.284	31.733	0.073782					47	21	3	0	0	0	0.53926	1	4647	4647		1.8442	0	1	41473			8662	5171	5799	5842	11815	11815					0.009236881576953238
KELQKGPFV	9	Unmodified	_KELQKGPFV_					0	0	0			REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3038940429688	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.543	1	80.543	80.043	81.043	0								0	0	0	0.23204	1	19629	19629		13.042	2.9685	1		+		8663	11701	5800	5843	11816	11816					0.0762661985700106
KELQKGPFV	9	Unmodified	_KELQKGPFV_					0	0	0			REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3037109375	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.7	1	80.7	80.2	81.2	0								0	0	0	0.24643	1	19677	19677		10.074	0	1		+		8664	11701	5800	5843	11817	11817					0.0762661985700106
KELQKGPFV	9	Unmodified	_KELQKGPFV_					0	0	0			REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3037719726562	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.108	1	81.108	80.608	81.608	0								0	0	0	0.24643	1	19801	19801		10.074	1.3285	1		+		8665	11701	5800	5843	11818	11818					0.0762661985700106
KELQKGPFV	9	Unmodified	_KELQKGPFV_					0	0	0			REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.457	1	80.48	79.98	80.98	0.023605								0	0	0	0.23204	1	19442	19442		13.042	2.9685	1		+		8666	11701	5800	5843	11819	11819					0.0762661985700106
KELQKGPFV	9	Unmodified	_KELQKGPFV_					0	0	0			REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.046	1	81.069	80.569	81.569	0.023605								0	0	0	0.24643	1	19621	19621		10.074	0	1		+		8667	11701	5800	5843	11820	11820					0.0762661985700106
KELQMKLEKLR	11	Unmodified	_KELQMKLEKLR_					0	0	0		ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.28363037109375	3	472.618278	1414.83301	0.27241	0.00012875	-1.7444	-0.00082445	-1.472	-0.00069571	472.6174553649992	93.901	0.59097	93.901	93.323	93.914	0					33	23	2	0	0	0	0.31101	1	23650	23650		0.40827	0	1	286950			8668	773	5801	5844	11821	11821					0.14218183639150084
KELQMKLEKLR	11	Unmodified	_KELQMKLEKLR_					0	0	0		ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	472.618278	1414.83301	0.086079	4.0682E-05	-1.7724	-0.00083767	-1.6863	-0.00079699	472.61718300911866	94.094	0.229	94.132	94.043	94.272	0.038086	0.11542	-2.5811E-05	NaN	0.40827	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150510			8669	773	5801	5844							0.14218183639150084
KELQRFKET	9	Unmodified	_KELQRFKET_					0	0	0			REV__ENST00000496567.5_1_9:97782011-97782122:+|nuORF	REV__ENST00000496567.5_1_9:97782011-97782122:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3309326171875	2	589.830037	1177.64552	0.061458	3.625E-05	0.057209	3.3744E-05	0.11867	6.9994E-05	589.830143565032	27.109	1.3337	27.195	26.975	28.308	0.086699					253	91	5	0	0	0	0.33978	1	3600	3600		1.4819	0.15237	1	1996400	+		8670	12187	5802	5845	11822	11822					0.0638048842608896
KELSRSRK	8	Unmodified	_KELSRSRK_					0	0	0		tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1	tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1	tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.8143005371094	2	502.30399	1002.59343	0.28551	0.00014341	-2.3904	-0.0012007	-2.1049	-0.0010573	502.80526754880407	91.729	0.27338	91.766	91.586	91.859	0.03653					13	9	2	0	0	0	0.50159	1	22895	22895		12.532	0	1	91795			8671	13749	5803	5846	11823	11823					0.09223369802987236
KELSTTWRVF	10	Unmodified	_KELSTTWRVF_					0	0	0			REV__ENST00000590599.1_1_18:77496343-77513668:+|nuORF	REV__ENST00000590599.1_1_18:77496343-77513668:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.58221435546875	3	422.89955	1265.67682	0.60064	0.00025401	4.0105	0.001696	4.6111	0.00195	423.23575714331594	94.189	0.42797	94.189	94.023	94.451	0					24	19	2	0	0	0	0.3184	1	23733	23733		1.7423	0.41263	1	67337	+		8672	12577	5804	5847	11824	11824					0.05461061460164274
KELSVVQSR	9	Unmodified	_KELSVVQSR_					0	0	0			REV__ENST00000524237.1_1_8:42338010-42396746:-|nuORF	REV__ENST00000524237.1_1_8:42338010-42396746:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3035278320312	2	523.303655	1044.59276	0.34884	0.00018255	0.015392	8.0547E-06	0.36423	0.0001906	523.3035050306771	79.839	0.75821	79.866	79.464	80.222	0.026436					60	26	3	0	0	0	0.32831	1	19346	19346		2.9952	0	1	275610	+		8673	12314	5805	5848	11825	11825					0.07224530363282611
KELTALLLL	9	Unmodified	_KELTALLLL_					0	0	0			REV__nc|ENSG00000162746|Q6BAA4-3|FCRLB	REV__nc|ENSG00000162746|Q6BAA4-3|FCRLB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8526306152344	2	507.333893	1012.65323	-0.11572	-5.8709E-05	1.3783	0.00069926	1.2626	0.00064055	507.3345658187361	111.88	0.44384	111.88	111.84	112.28	0					61	51	2	0	0	0	0.2446	1	28660	28660		7.2892	7.2892	1	1315600	+		8674	12828	5806	5849	11826	11826					0.14741247693677906
KELVHELRKP	10	Unmodified	_KELVHELRKP_					0	0	0			REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8729248046875	2	624.874779	1247.73501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.43	1	103.47	102.97	103.97	0.03791								0	0	0	0.33892	1	26416	26416		1.4819	0.15237	1		+		8675	10357	5807	5850	11827	11827					0.12104743105464877
KELYRRRFPRK	11	Unmodified	_KELYRRRFPRK_					0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000484423.5_1_1:145576054-145578613:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3104248046875	3	516.979309	1547.9161	0.54937	0.00028401	-1.7712	-0.00091569	-1.2219	-0.00063168	516.9781125273926	98.946	0.050514	98.988	98.955	99.005	0.041939					6	3	2	0	0	0	0.31102	1	25075	25075		0.073264	0.073264	1	34109			8676	2548	5808	5851	11828	11828					0.1640568120201351
KEMMLKLEM	9	Unmodified	_KEMMLKLEM_					0	0	0			REV__nc|ENSG00000115468|Q9BUP0-2|EFHD1	REV__nc|ENSG00000115468|Q9BUP0-2|EFHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.818115234375	2	576.794906	1151.57526	0.57359	0.00033084	-0.81762	-0.0004716	-0.24403	-0.00014076	576.7952908619576	64.818	0.48648	64.818	64.546	65.032	0					24	17	2	0	0	0	0.23478	1	14855	14855		17.113	4.0704	1	85235	+		8677	8786	5809	5852	11829	11829					0.005534074500928909
KEMVPRSVKM	10	Unmodified	_KEMVPRSVKM_					0	0	0			REV__nc|ENSG00000154783|Q6ZNL6-2|FGD5	REV__nc|ENSG00000154783|Q6ZNL6-2|FGD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8162841796875	2	602.830669	1203.64678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.762	1	82.762	82.262	83.262	0								0	0	0	0.33805	1	20304	20304		2.4985	0.43874	1		+		8678	9717	5810	5853	11830	11830					0.05310663198997645
KENCTLQFE	9	Unmodified	_KENCTLQFE_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7730712890625	2	556.258056	1110.50156	0.5763	0.00032057	2.9602	0.0016466	3.5365	0.0019672	556.260489283101	83.043	0.27257	83.043	82.928	83.2	0					12	8	2	0	0	0	0.23975	1	20409	20409		14.838	1.3304	1	26062			8679	1826	5811	5854	11831	11831					-0.04927101396356193
KENDAPVLK	9	Unmodified	_KENDAPVLK_					0	0	0			REV__ENST00000527231.1_1_11:111931791-111931899:+|nuORF	REV__ENST00000527231.1_1_11:111931791-111931899:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.28472900390625	2	507.284931	1012.55531	-0.25991	-0.00013185	0.093143	4.725E-05	-0.16677	-8.4598E-05	507.28491039641426	25.521	0.83124	25.521	25.271	26.102	0					157	64	3	0	0	0	0.28472	1	3040	3040		8.7454	0	1	187470	+		8680	9636	5812	5855	11832	11832					0.04953439097664614
KENRQQIVRAR	11	Unmodified	_KENRQQIVRAR_					0	0	0		ENST00000580285.1_1_17:62529306-62530930:+|nuORF;ENST00000553956.6_1_17:62527116-62533894:+|nuORF;nc|ENSG00000258890|Q96GE4-2|CEP95;ENSG00000258890|ENST00000556440|CEP95	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.6080017089844	3	466.607652	1396.80113	0.55962	0.00026112	0.48556	0.00022656	1.0452	0.00048768	466.60775365841516	92.995	0.75699	92.995	92.654	93.411	0					82	28	4	0	0	0	0.4167	1	23391	23391		0.50596	0.051438	1	346230			8681	5707	5813	5856	11833	11833					0.11859952000213525
KEPTPFIIE	9	Unmodified	_KEPTPFIIE_					0	0	0		ENSG00000115998|ENST00000264434|C2orf42	ENSG00000115998|ENST00000264434|C2orf42	ENSG00000115998|ENST00000264434|C2orf42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.297607421875	2	537.297507	1072.58046	0.2755	0.00014802	0.062373	3.3513E-05	0.33787	0.00018154	537.2974363893691	90.084	1.0997	90.084	89.811	90.911	0					119	43	4	0	0	0	0.23216	2	22533	22533;22579		14.838	2.3067	1	9228500			8682	1934	5814	5857	11834;11835	11834					0.047074939002413885
KEQGSVYF	8	Unmodified	_KEQGSVYF_					0	0	0		ENST00000597277.1_9:43426178-43426727:-|nuORF	ENST00000597277.1_9:43426178-43426727:-|nuORF	ENST00000597277.1_9:43426178-43426727:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2355651855469	2	479.23745	956.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.807	1	30.881	30.381	31.381	0.073782								0	0	0	0.38822	1	4413	4413		0.79363	0	1				8683	7287	5815	5858	11836	11836					-0.019624943735266243
KEQIRYLARE	10	Unmodified	_KEQIRYLARE_					0	0	0			REV__DYNC1H1-HSP90AA1|1|fusion	REV__DYNC1H1-HSP90AA1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.9142761230469	3	435.913971	1304.72008	0.019427	8.4684E-06	-0.57747	-0.00025173	-0.55805	-0.00024326	435.9136192744749	29.737	0.56212	29.737	29.535	30.097	0					52	26	3	0	0	0	0.47199	1	4267	4267		0.62683	0	1	42227	+		8684	7902	5816	5859	11837	11837					0.07991251237444885
KERCNKLLQ	9	Unmodified	_KERCNKLLQ_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7748413085938	2	566.318783	1130.62301	0.19598	0.00011099	-0.19332	-0.00010948	0.0026595	1.5061E-06	566.3188069515031	59.571	0.53577	59.571	59.453	59.989	0					29	20	3	0	0	0	0.2446	1	13314	13314		11.64	0	1	130160			8685	605	5817	5860	11838	11838					0.06292565756825752
KERKELCLM	9	Unmodified	_KERKELCLM_					0	0	0			REV__ENST00000534297.2_2_11:121986884-121986950:-|nuORF	REV__ENST00000534297.2_2_11:121986884-121986950:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.4434204101562	2	575.309569	1148.60458	0.22813	0.00013125	2.0871	0.0012007	2.3152	0.001332	575.3105927836868	58.237	0.39053	58.308	58.056	58.446	0.070477					28	14	3	0	0	0	0.34646	1	12649	12649		0.6015	0.076735	1	235140	+		8686	12372	5818	5861	11839	11839					0.03622687790584678
KERSLNPSP	9	Unmodified	_KERSLNPSP_					0	0	0			REV__ENST00000466154.5_1_16:3652081-3658965:-|nuORF	REV__ENST00000466154.5_1_16:3652081-3658965:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7593383789062	2	514.28018	1026.54581	-0.34377	-0.0001768	0.089365	4.5959E-05	-0.25441	-0.00013084	514.2802578465297	16.802	0.22853	16.802	16.657	16.886	0					40	27	2	0	0	0	0.25921	1	808	808		1.4819	0.15237	1	23729	+		8687	10779	5819	5862	11840	11840					0.0335967081216495
KERSLNPSP	9	Unmodified	_KERSLNPSP_					0	0	0			REV__ENST00000466154.5_1_16:3652081-3658965:-|nuORF	REV__ENST00000466154.5_1_16:3652081-3658965:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	514.28018	1026.54581	0.2461	0.00012656	-0.1344	-6.9117E-05	0.1117	5.7448E-05	514.2799450665567	16.771	0.20974	16.849	16.751	16.961	0.077806	0.023617	-0.00012745	NaN	1.4819	39	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25378	+		8688	10779	5819	5862							0.0335967081216495
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3111572265625	2	520.310949	1038.60735	0.22052	0.00011474	-0.26572	-0.00013826	-0.045197	-2.3517E-05	520.3108142298231	46.641	0.73511	46.641	46.528	47.263	0					75	37	3	0	0	0	0.006264	1	9291	9291		78.728	32.707	1	757090			8689	3191	5820	5863	11841	11841					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.3106689453125	2	520.310949	1038.60735	0.14435	7.5108E-05	-0.16714	-8.6964E-05	-0.022787	-1.1856E-05	520.3107639217525	46.577	0.55074	46.66	46.457	47.007	0.083096					75	34	3	0	0	0	0.0072241	1	9142	9142		75.761	25.828	1	516540			8690	3191	5820	5863	11842	11842					0.08958602511415847
KETDPEPEL	9	Unmodified	_KETDPEPEL_					0	0	0			REV__ARHGAP39|p.R155Sfs*5|1|0.18|ENSG00000147799|chr8:144580875-144580893|CGCCGCGGGCCGCCCGGCC/-|frameshift_variant	REV__ARHGAP39|p.R155Sfs*5|1|0.18|ENSG00000147799|chr8:144580875-144580893|CGCCGCGGGCCGCCCGGCC/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2564697265625	2	529.256037	1056.49752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.049	1	64.12	63.62	64.62	0.071014								0	0	0	0.18435	1	14451	14451		20.454	4.6064	1		+		8691	7717	5821	5864	11843	11843					-0.02846867618404758
KETFAKSGR	9	Unmodified	_KETFAKSGR_					0	0	0		ENST00000504921.6_2_5:88017962-88018139:-|nuORF	ENST00000504921.6_2_5:88017962-88018139:-|nuORF	ENST00000504921.6_2_5:88017962-88018139:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2835083007812	2	512.282723	1022.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.48	1	89.48	88.98	89.98	0								0	0	0	0.28807	1	22344	22344		1.4819	0.28856	1				8692	6883	5822	5865	11844	11844					0.0405197467475773
KETKEGLFA	9	Unmodified	_KETKEGLFA_					0	0	0			REV__ACACA|p.N571Ifs*45|1|0.16|ENSG00000278540|chr17:37257817-37257817|T/-|frameshift_variant	REV__ACACA|p.N571Ifs*45|1|0.16|ENSG00000278540|chr17:37257817-37257817|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7792663574219	2	511.779482	1021.54441	0.11424	5.8468E-05	0.46775	0.00023938	0.58199	0.00029785	511.7795747778308	34.957	0.37207	35.036	34.827	35.199	0.078827					24	14	2	0	0	0	0.32375	1	5636	5636		3.5965	0	1	34492	+		8693	7688	5823	5866	11845	11845					0.034500367233818
KETKVQPLT	9	Unmodified	_KETKVQPLT_					0	0	0			REV__nc|ENSG00000113580|P04150-7|NR3C1	REV__nc|ENSG00000113580|P04150-7|NR3C1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7372436523438	2	522.308406	1042.60226	-0.15457	-8.0735E-05	-0.23293	-0.00012166	-0.3875	-0.0002024	522.3081755705091	27.535	0.29767	27.535	27.364	27.661	0					41	27	2	0	0	0	0.25787	1	3580	3580		2.9952	0	1	119890	+		8694	8747	5824	5867	11846	11846					0.0826629864880033
KEVFWIEDR	9	Unmodified	_KEVFWIEDR_					0	0	0			REV__tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	REV__tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.2063293457031	3	407.880267	1220.61897	0.15126	6.1697E-05	-0.084251	-3.4364E-05	0.067011	2.7332E-05	407.8803539137455	39.802	0.7192	39.802	39.461	40.18	0					59	25	3	0	0	0	0.33208	1	7173	7173		2.4985	0.65425	1	77074	+		8695	13181	5825	5868	11847	11847					0.01748799534743739
KEYRLSAI	8	Unmodified	_KEYRLSAI_					0	0	0		ENST00000545213.5_1_14:24792605-24795062:-|nuORF;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;nc|ENSG00000129467|Q8NFM4-2|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4	ENST00000545213.5_1_14:24792605-24795062:-|nuORF	ENST00000545213.5_1_14:24792605-24795062:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2824401855469	2	490.282192	978.549831	0.35967	0.00017634	0.58676	0.00028768	0.94643	0.00046402	490.2827690247977	47.344	0.47442	47.427	47.06	47.534	0.083096					23	17	2	0	0	0	0.48462	1	9382	9382		14.838	1.7958	1	58266			8696	15	5826	5869	11848	11848					0.059697603058339155
KFAEEFYSF	9	Unmodified	_KFAEEFYSF_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2716674804688	2	584.27149	1166.52843	0.71762	0.00041928	-0.10837	-6.3317E-05	0.60925	0.00035597	584.2712814596446	64.121	1.4162	64.121	63.87	65.286	0					114	50	4	0	0	0	1.3975E-05	3	14636	14587;14636;14686		145.13	76.875	1	1933000			8697	4025	5827	5870	11849;11850;11851	11850					-0.0481766951352256
KFAEEFYSF	9	Unmodified	_KFAEEFYSF_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2721557617188	2	584.27149	1166.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.975	1	64.975	64.475	65.475	0								0	0	0	0.05392	1	14877	14877		47.594	16.958	1				8698	4025	5827	5870	11852	11852					-0.0481766951352256
KFAEEFYSF	9	Unmodified	_KFAEEFYSF_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2717895507812	2	584.27149	1166.52843	0.75924	0.0004436	-0.14106	-8.2419E-05	0.61817	0.00036118	584.2712475355926	64.056	1.4067	64.127	63.829	65.236	0.071014					120	51	4	0	0	0	5.8571E-07	6	14474	14421;14474;14527;14606;14662;14724		157.8	92.56	1	2236500			8699	4025	5827	5870	11853;11854;11855;11856;11857;11858	11854					-0.0481766951352256
KFASLIFFTLE	11	Unmodified	_KFASLIFFTLE_					0	0	0			REV__TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant	REV__TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.24835205078125	3	439.248068	1314.72238	0.17171	7.5423E-05	0.7593	0.00033352	0.93101	0.00040894	439.24832445273506	57.775	1.0498	57.844	57.606	58.656	0.068371					83	38	4	0	0	0	0.37201	1	12523	12523		9.7643	2.2872	1	815450	+		8700	9550	5828	5871	11859	11859					0.07760286922598425
KFASLIFFTLE	11	Unmodified	_KFASLIFFTLE_					0	0	0			REV__TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant	REV__TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	439.248068	1314.72238	0.45823	0.00020128	0.57489	0.00025252	1.0331	0.00045379	439.24824765528456	57.909	0.53795	57.909	57.679	58.217	0	0.0325	-0.0001394	NaN	9.7643	65	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658250	+		8701	9550	5828	5871							0.07760286922598425
KFCKGLLFCFF	11	Unmodified	_KFCKGLLFCFF_					0	0	0			REV__ENSG00000088035|ENST00000263440|ALG6	REV__ENSG00000088035|ENST00000263440|ALG6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.5680236816406	3	451.567979	1351.68211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.759	1	64.828	64.328	65.328	0.068916								0	0	0	0.33799	1	14665	14665		1.4551	0.24029	1		+		8702	8283	5829	5872	11860	11860					0.02033325726779367
KFCKILWF	8	Unmodified	_KFCKILWF_					0	0	0		ENST00000254810.8_2_17:73774615-73774675:-|nuORF	ENST00000254810.8_2_17:73774615-73774675:-|nuORF	ENST00000254810.8_2_17:73774615-73774675:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.79443359375	2	542.804248	1083.59394	-0.44993	-0.00024423	1.0327	0.00056056	0.58277	0.00031633	542.8049129431754	41.329	0.3846	41.329	41.075	41.459	0					26	13	3	0	0	0	0.53345	1	7699	7699		5.7604	0.028577	1	59601			8703	5846	5830	5873	11861	11861					0.05549073198471888
KFCKILWF	8	Unmodified	_KFCKILWF_					0	0	0		ENST00000254810.8_2_17:73774615-73774675:-|nuORF	ENST00000254810.8_2_17:73774615-73774675:-|nuORF	ENST00000254810.8_2_17:73774615-73774675:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.804248	1083.59394	-0.23556	-0.00012786	1.1175	0.00060658	0.88194	0.00047872	542.804997158489	41.164	0.32284	41.254	41.128	41.451	0.089645	-0.037787	5.2934E-05	NaN	5.7604	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63004			8704	5846	5830	5873							0.05549073198471888
KFCYKRKSF	9	Unmodified	_KFCYKRKSF_					0	0	0		ENST00000441476.6_2_7:6029508-6029571:-|nuORF	ENST00000441476.6_2_7:6029508-6029571:-|nuORF	ENST00000441476.6_2_7:6029508-6029571:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.3280029296875	2	603.826243	1205.63793	0.24413	0.00014741	2.0667	0.0012479	2.3108	0.0013953	603.8276418054638	39.996	0.25782	40.085	39.93	40.188	0.088562					15	9	2	0	0	0	0.32375	1	7153	7153		3.5965	1.098	1	38654			8705	6524	5831	5874	11862	11862					0.043340576248056095
KFDDGAVFL	9	Unmodified	_KFDDGAVFL_					0	0	0		nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2608947753906	2	506.260925	1010.5073	0.28245	0.00014299	0.042726	2.163E-05	0.32518	0.00016462	506.2608200905305	62.208	1.0602	62.208	61.938	62.999	0					98	39	4	0	0	0	0.098463	2	14006	14006;14052		32.786	9.7314	1	1112400			8706	627	5832	5875	11863;11864	11863					0.0024636517761109644
KFDDGAVFL	9	Unmodified	_KFDDGAVFL_					0	0	0		nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2609558105469	2	506.260925	1010.5073	0.2777	0.00014059	-0.0068557	-3.4708E-06	0.27084	0.00013712	506.26081473766175	62.096	0.93505	62.169	61.972	62.907	0.073421					77	33	3	0	0	0	0.12214	2	13882	13839;13882		27.629	7.3721	1	1024200			8707	627	5832	5875	11865;11866	11866					0.0024636517761109644
KFDDIRIYF	9	Unmodified	_KFDDIRIYF_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.8218994140625	2	608.821681	1215.62881	0.69739	0.00042459	-0.42497	-0.00025873	0.27242	0.00016585	608.8213692993088	64.803	1.6221	64.803	64.546	66.168	0					152	58	4	0	0	0	0.00025817	2	14842	14842;14942		136.39	92.534	1	2446900			8708	2244	5833	5876	11867;11868	11867					0.02961987540129485
KFDDIRIYF	9	Unmodified	_KFDDIRIYF_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.8218994140625	2	608.821681	1215.62881	0.66171	0.00040286	-0.31114	-0.00018943	0.35057	0.00021343	608.8215011684484	64.776	1.5224	64.845	64.562	66.084	0.068916					142	58	4	0	0	0	0.00089721	3	14672	14672;14722;14765		148.27	104.41	1	3154400			8709	2244	5833	5876	11869;11870;11871	11869					0.02961987540129485
KFDDIRIYF	9	Unmodified	_KFDDIRIYF_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.216796875	3	406.21688	1215.62881	0.25089	0.00010191	-0.21973	-8.9258E-05	0.031158	1.2657E-05	406.2167307952057	64.779	1.0536	64.848	64.587	65.64	0.068916					108	40	4	0	0	0	0.22438	1	14727	14727		15.739	2.866	1	1896900			8710	2244	5833	5876	11872	11872					0.02961987540129485
KFDFPVSYL	9	Unmodified	_KFDFPVSYL_					0	0	0		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.292236328125	2	558.292225	1114.5699	0.37807	0.00021107	-0.11913	-6.6512E-05	0.25894	0.00014456	558.2920237571545	74.108	0.715	74.108	73.92	74.635	0					64	26	3	0	0	0	0.0089808	2	17687	17641;17687		70.332	41.845	1	1246500			8711	2802	5834	5877	11873;11874	11874					0.017195112458011863
KFDFPVSYL	9	Unmodified	_KFDFPVSYL_					0	0	0		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2921142578125	2	558.292225	1114.5699	0.62174	0.00034711	-0.38015	-0.00021224	0.24158	0.00013487	558.2918283432134	74.141	0.68645	74.189	73.933	74.619	0.048546					66	24	4	0	0	0	0.010235	2	17524	17481;17524		66.457	37.97	1	881970			8712	2802	5834	5877	11875;11876	11876					0.017195112458011863
KFDFSNLS	8	Unmodified	_KFDFSNLS_					0	0	0		nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.23480224609375	2	479.23745	956.460347	-0.45792	-0.00021945	1.575	0.00075481	1.1171	0.00053535	479.23811555801274	25.572	0.4312	25.572	25.271	25.702	0					47	33	2	0	0	0	0.53926	1	2983	2983		1.8442	0.36234	1	30269			8713	354	5835	5878	11877	11877					-0.019624943735266243
KFDGKDFRW	9	Unmodified	_KFDGKDFRW_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8578491210938	2	599.803823	1197.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.019	1	99.019	98.519	99.519	0								0	0	0	0.28631	1	25247	25247		1.8442	0	1				8714	531	5836	5879	11878	11878					0.0021995008312387654
KFEEMWAEY	9	Unmodified	_KFEEMWAEY_					0	0	0			REV__nc|ENSG00000162600|Q96E52-2|OMA1	REV__nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7683715820312	2	616.768257	1231.52196	-0.21008	-0.00012957	0.037634	2.3211E-05	-0.17245	-0.00010636	616.7684693025642	37.977	0.50779	37.977	37.7	38.207	0					29	17	2	0	0	0	0.33704	1	6704	6704		1.8442	0.19162	1	35554	+		8715	9892	5837	5880	11879	11879					-0.08453930736550319
KFFEEVLLF	9	Unmodified	_KFFEEVLLF_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.325439453125	2	586.323525	1170.6325	0.76461	0.00044831	1.3665	0.00080118	2.1311	0.0012495	586.3241573461921	83.576	0.4696	83.576	83.371	83.841	0					34	15	3	0	0	0	0.056368	1	20561	20561		41.956	15.072	1	592830			8716	3133	5838	5881	11880	11880					0.05400657313998636
KFFHGNVE	8	Unmodified	_KFFHGNVE_					0	0	0			REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2563171386719	2	489.245609	976.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.738	1	38.738	38.238	39.238	0								0	0	0	0.38822	1	6912	6912		5.2307	0.47466	1		+		8717	10145	5839	5882	11881	11881					-0.012513684167629435
KFFKEADVIGF	11	Unmodified	_KFFKEADVIGF_					0	0	0		tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.5312194824219	3	434.236051	1299.68632	0.37348	0.00016218	1.9403	0.00084254	2.3138	0.0010047	434.2369480583224	48.411	0.67852	48.411	48.123	48.801	0					33	22	2	0	0	0	0.31097	1	9941	9941		1.2148	0	1	64410			8718	13637	5840	5883	11882	11882					0.048468297457020526
KFFKEADVIGF	11	Unmodified	_KFFKEADVIGF_					0	0	0		tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	434.236051	1299.68632	0.20313	8.8208E-05	2.1932	0.00095238	2.3964	0.0010406	434.23706744931604	48.329	0.57825	48.409	48.087	48.665	0.080029	-0.001038	0.00023452	NaN	2.6312	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33708			8719	13637	5840	5883							0.048468297457020526
KFFLRMWP	8	Unmodified	_KFFLRMWP_					0	0	0			REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8074340820312	2	562.807322	1123.60009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.525	1	14.525	14.025	15.025	0								0	0	0	0.38822	1	387	387		0	0	1		+		8720	9505	5841	5884	11883	11883					0.0432359143001122
KFFLRMWP	8	Unmodified	_KFFLRMWP_					0	0	0			REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8074951171875	2	562.807322	1123.60009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.015	1	15.015	14.515	15.515	0								0	0	0	0.38822	1	474	474		0	0	1		+		8721	9505	5841	5884	11884	11884					0.0432359143001122
KFFSSIILL	9	Unmodified	_KFFSSIILL_					0	0	0			REV__MIA3|p.D922H|1|0.12|ENSG00000154305|chr1:222629984-222629984|G/C|missense_variant	REV__MIA3|p.D922H|1|0.12|ENSG00000154305|chr1:222629984-222629984|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2944946289062	2	534.328611	1066.64267	0.63634	0.00034001	0.61581	0.00032904	1.2521	0.00066906	534.3288249890004	82.332	0.10639	82.332	82.288	82.395	0					6	3	2	0	0	0	0.24929	1	20180	20180		9.3831	1.473	1	49659	+		8722	9711	5842	5885	11885	11885					0.11201265039267128
KFFSSIILL	9	Unmodified	_KFFSSIILL_					0	0	0			REV__MIA3|p.D922H|1|0.12|ENSG00000154305|chr1:222629984-222629984|G/C|missense_variant	REV__MIA3|p.D922H|1|0.12|ENSG00000154305|chr1:222629984-222629984|G/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	534.328611	1066.64267	0.53239	0.00028447	0.22362	0.00011948	0.75601	0.00040396	534.8301792741834	82.342	0.12746	82.364	82.27	82.398	0.021744	0.015844	-0.00015215	NaN	9.3831	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58788	+		8723	9711	5842	5885							0.11201265039267128
KFGASRAA	8	Unmodified	_KFGASRAA_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2154235839844	2	404.22722	806.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.957	1	32.03	31.53	32.53	0.073782								0	0	0	0.38822	1	4756	4756		2.0598	0	1				8724	13348	5843	5886	11886	11886					0.02892379757327035
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7955322265625	2	543.795132	1085.57571	-0.0048797	-2.6535E-06	0.044941	2.4439E-05	0.040062	2.1785E-05	543.7954779889382	39.49	4.1187	39.49	39.03	43.149	0					396	147	5	0	0	0	5.8762E-13	18	7127	7079;7127;7179;7223;7266;7312;7361;7506;7556;7603;7651;7750;7796;7842;7895;7944;7987;8145		187.14	118.04	1	16241000			8725	1182;6691	5844	5887	11887;11888;11889;11890;11891;11892;11893;11894;11895;11896;11897;11898;11899;11900;11901;11902;11903;11904	11888					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7948608398438	2	543.795132	1085.57571	-0.13458	-7.3185E-05	0.49951	0.00027163	0.36493	0.00019845	543.7951670961106	44.058	2.2094	44.058	43.149	45.358	0					131	78	2	0	0	0	0.25517	1	8874	8874		12.175	1.3752	1	105460			8726	1182;6691	5844	5887	11905	11905					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7950439453125	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.992	1	42.992	42.492	43.492	0								0	0	0	0.15463	1	8196	8196		24.882	4.467	1				8727	1182;6691	5844	5887	11906	11906					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7945556640625	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.154	1	43.154	42.654	43.654	0								0	0	0	0.16188	1	8245	8245		23.801	9.3957	1				8728	1182;6691	5844	5887	11907	11907					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7826538085938	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.46	1	47.46	46.96	47.96	0								0	0	0	0.25573	1	9546	9546		8.1555	1.4324	1				8729	1182;6691	5844	5887	11908	11908					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7955932617188	2	543.795132	1085.57571	0.15414	8.3821E-05	-0.061162	-3.3259E-05	0.092979	5.0562E-05	543.7954141217015	39.375	3.8617	39.464	39.201	43.062	0.088562					404	151	5	0	0	0	5.8762E-13	18	7018	6934;6979;7018;7064;7109;7149;7194;7324;7367;7408;7449;7501;7577;7688;7732;7790;7836;8002		187.14	108.41	1	15301000			8730	1182;6691	5844	5887	11909;11910;11911;11912;11913;11914;11915;11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926	11911					0.03634609757477847
KFIFDILFFK	10	Unmodified	_KFIFDILFFK_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.8663024902344	3	439.925037	1316.75328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.61	1	12.61	12.11	13.11	0								0	0	0	0.34018	1	92	92		0	0	1		+		8731	8192	5845	5888	11927	11927					0.10757485027420444
KFIFTLIVS	9	Unmodified	_KFIFTLIVS_					0	0	0		ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.8333740234375	2	534.328611	1066.64267	0.48723	0.00026034	2.4426	0.0013052	2.9298	0.0015655	534.3285259409494	109.22	0.18582	109.24	109.13	109.31	0.019402					31	24	2	0	0	0	0.32112	1	27926	27926		3.9444	0	1	422430			8732	6942	5846	5889	11928	11928					0.1120126503924439
KFIFTLIVS	9	Unmodified	_KFIFTLIVS_					0	0	0		ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	534.328611	1066.64267	0.0053202	2.8427E-06	3.3027	0.0017647	3.308	0.0017675	534.329189034712	109.21	0.16545	109.21	109.1	109.27	0	-0.016744	0.00026433	NaN	3.9444	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338550			8733	6942	5846	5889							0.1120126503924439
KFISTSLLL	9	Unmodified	_KFISTSLLL_					0	0	0		ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.3183898925781	2	511.318243	1020.62193	0.49755	0.00025441	-0.15786	-8.0717E-05	0.33969	0.00017369	511.31808823867294	67.383	0.91188	67.383	67.159	68.07	0					79	35	3	0	0	0	0.0089808	2	15651	15603;15651		70.332	29.663	1	792590			8734	3616	5847	5890	11929;11930	11930					0.11244674659576503
KFISTSLLL	9	Unmodified	_KFISTSLLL_					0	0	0		ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.3183288574219	2	511.318243	1020.62193	0.70417	0.00036005	-0.31815	-0.00016267	0.38602	0.00019738	511.31795873694693	67.332	0.86415	67.397	67.21	68.074	0.065071					74	29	4	0	0	0	0.0097877	2	15488	15443;15488		67.838	27.136	1	737510			8735	3616	5847	5890	11931;11932	11932					0.11244674659576503
KFITEFPLF	9	Unmodified	_KFITEFPLF_					0	0	0		nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3190307617188	2	571.318243	1140.62193	0.77988	0.00044556	1.0732	0.00061316	1.8531	0.0010587	571.3191296464411	81.072	0.69901	81.072	80.902	81.601	0					29	23	2	0	0	0	0.13341	1	19814	19814		26.268	1.5943	1	143400			8736	1542	5848	5891	11933	11933					0.057246746595410514
KFITEFPLF	9	Unmodified	_KFITEFPLF_					0	0	0		nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.319091796875	2	571.318243	1140.62193	0.54939	0.00031387	1.0498	0.00059975	1.5992	0.00091363	571.3189070814475	81.087	0.44888	81.111	80.882	81.331	0.023605					25	15	2	0	0	0	0.098463	1	19615	19615		32.786	0.66872	1	152090			8737	1542	5848	5891	11934	11934					0.057246746595410514
KFIWTNHKF	9	Unmodified	_KFIWTNHKF_					0	0	0		ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF;ENSG00000184752|ENST00000327772|NDUFA12	ENST00000538372.6_1_12:95365218-95388109:-|nuORF	ENST00000538372.6_1_12:95365218-95388109:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.5573425292969	3	407.557348	1219.65021	0.00024723	1.0076E-07	-0.03866	-1.5756E-05	-0.038413	-1.5655E-05	407.5572833972125	39.929	2.6465	39.929	39.633	42.279	0					238	94	5	0	0	0	0.020768	7	7329	7242;7284;7329;7421;7468;7519;7568		69.338	49.976	1	529770			8738	4992	5849	5892	11935;11936;11937;11938;11939;11940;11941	11937					0.04917417359479259
KFIWTNHKF	9	Unmodified	_KFIWTNHKF_					0	0	0		ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF;ENSG00000184752|ENST00000327772|NDUFA12	ENST00000538372.6_1_12:95365218-95388109:-|nuORF	ENST00000538372.6_1_12:95365218-95388109:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5574645996094	3	407.557348	1219.65021	-0.17443	-7.1089E-05	0.21126	8.6099E-05	0.03683	1.501E-05	407.5574679532945	39.711	2.1526	39.8	39.513	41.666	0.088566					237	83	5	0	0	0	0.0016252	5	7081	7035;7081;7124;7164;7371		107.56	72.75	1	1500700			8739	4992	5849	5892	11942;11943;11944;11945;11946	11943					0.04917417359479259
KFKEQIDR	8	Unmodified	_KFKEQIDR_					0	0	0			REV__nc|ENSG00000204970|Q9Y5I3-2|PCDHA1	REV__nc|ENSG00000204970|Q9Y5I3-2|PCDHA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7847290039062	2	532.298373	1062.58219	-0.032261	-1.7172E-05	-0.079573	-4.2357E-05	-0.11183	-5.9529E-05	532.298288005333	42.674	0.79041	42.764	42.571	43.362	0.089764					41	29	2	0	0	0	0.53423	1	8038	8038		5.2307	0	1	116520	+		8740	10963	5850	5893	11947	11947					0.053405477088290354
KFKFYEKFL	9	Unmodified	_KFKFYEKFL_					0	0	0		ENST00000263734.4_1_2:46613451-46613523:+|nuORF	ENST00000263734.4_1_2:46613451-46613523:+|nuORF	ENST00000263734.4_1_2:46613451-46613523:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.28662109375	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.356	1	99.399	98.899	99.899	0.042839								0	0	0	0.28527	1	25193	25193		2.0598	0.57785	1				8741	5882	5851	5894	11948	11948					0.07628338959261782
KFKMHFLF	8	Unmodified	_KFKMHFLF_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|268|2|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|268|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7825317382812	2	549.301873	1096.58919	0.067485	3.707E-05	1.4765	0.00081107	1.544	0.00084814	549.3027968088971	46.111	0.33618	46.111	45.955	46.291	0					16	11	2	0	0	0	0.35759	1	9135	9135		12.532	3.9383	1	60202	+		8742	12714	5852	5895	11949	11949					0.044761890557310835
KFKSNELL	8	Unmodified	_KFKSNELL_					0	0	0			REV__ENSG00000198700|ENST00000361565|IPO9	REV__ENSG00000198700|ENST00000361565|IPO9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7845764160156	2	489.784567	977.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.466	1	62.539	62.039	63.039	0.072701								0	0	0	0.38822	1	13970	13970		11.64	0	1		+		8743	10907	5853	5896	11950	11950					0.06490644448626881
KFKWRKDP	8	Unmodified	_KFKWRKDP_					0	0	0		ENSG00000203747|ENST00000443193|FCGR3A	ENSG00000203747|ENST00000443193|FCGR3A	ENSG00000203747|ENST00000443193|FCGR3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.8172607421875	2	552.819276	1103.624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.851	1	17.935	17.435	18.435	0.083696								0	0	0	0.38822	1	930	930		0.6015	0.14316	1				8744	5442	5854	5897	11951	11951					0.07633148188028827
KFLGLRAYI	9	Unmodified	_KFLGLRAYI_					0	0	0		ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;ENSG00000068971|ENST00000164133|PPP2R5B;ENST00000556218.5_1_14:102349680-102375988:+|nuORF;nc|ENSG00000068971|Q15173-2|PPP2R5B	ENST00000467447.1_1_6:42974755-42975804:+|nuORF	ENST00000467447.1_1_6:42974755-42975804:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.8295288085938	2	540.831852	1079.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.35	1	108.35	107.85	108.85	0								0	0	0	0.27427	1	27942	27942		4.3292	0	1				8745	870	5855	5898	11952	11952					0.11251202990592901
KFLKDTYTA	9	Unmodified	_KFLKDTYTA_					0	0	0			REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7826538085938	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.308	1	47.308	46.808	47.808	0								0	0	0	0.17708	1	9500	9500		21.537	3.3906	1		+		8746	8347	5856	5899	11953	11953					0.03634609757477847
KFLLFARR	8	Unmodified	_KFLLFARR_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.I752V|1|0.45|ENSG00000134569|chr11:46886495-46886495|T/C|missense_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7318115234375	2	525.832186	1049.64982	0.067725	3.5612E-05	-1.3902	-0.00073104	-1.3225	-0.00069543	525.8312060225652	46.413	0.20541	46.413	46.267	46.472	0					9	6	2	0	0	0	0.3576	1	9205	9205		2.3027	0	1	45638			8747	2678	5857	5900	11954	11954					0.12698042430315581
KFLNARRGF	9	Unmodified	_KFLNARRGF_					0	0	0			REV__ENSG00000189420|ENST00000338647|ZFP92	REV__ENSG00000189420|ENST00000338647|ZFP92	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2835693359375	2	554.82235	1107.63015	0.44118	0.00024478	1.3197	0.00073221	1.7609	0.00097699	554.823106983706	57.054	0.68587	57.054	56.777	57.463	0					33	24	2	0	0	0	0.2446	1	12436	12436		11.64	3.047	1	169430	+		8748	10796	5858	5901	11955	11955					0.08063666419548099
KFLNARRGF	9	Unmodified	_KFLNARRGF_					0	0	0			REV__ENSG00000189420|ENST00000338647|ZFP92	REV__ENSG00000189420|ENST00000338647|ZFP92	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.79296875	2	554.82235	1107.63015	0.62188	0.00034504	1.619	0.00089827	2.2409	0.0012433	554.8230870363427	56.972	0.48153	57.039	56.853	57.335	0.066448					26	17	2	0	0	0	0.23598	1	12264	12264		15.847	4.2069	1	154500	+		8749	10796	5858	5901	11956	11956					0.08063666419548099
KFNFNYNLY	9	Unmodified	_KFNFNYNLY_					0	0	0			REV__tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1	REV__tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.343505859375	2	611.798206	1221.58186	0.56583	0.00034617	3.1721	0.0019407	3.7379	0.0022868	611.7988517014966	70.873	0.56012	70.931	70.728	71.288	0.058578					29	20	2	0	0	0	0.22821	1	16569	16569		14.838	0	1	253570	+		8750	13263	5859	5902	11957	11957					-0.020068720109975402
KFNNDLHQML	10	Unmodified	_KFNNDLHQML_					0	0	0			REV__ENST00000485596.5_1_15:85634092-85681131:+|nuORF	REV__ENST00000485596.5_1_15:85634092-85681131:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8388061523438	2	630.313697	1258.61284	0.57603	0.00036308	0.54072	0.00034082	1.1167	0.0007039	630.3156270984643	81.783	0.6843	81.783	81.515	82.2	0					35	23	2	0	0	0	0.31811	1	19953	19953		2.9952	0	1	70851	+		8751	8175	5860	5903	11958	11958					-0.006120419684293665
KFNPVSFTW	9	Unmodified	_KFNPVSFTW_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2902221679688	2	563.290017	1124.56548	0.4558	0.00025675	0.39317	0.00022147	0.84897	0.00047822	563.2899269139192	68.685	1.3233	68.685	68.408	69.732	0					129	47	4	0	0	0	8.9172E-06	4	16023	15974;16023;16065;16225		149.91	113.79	1	3241700			8752	2270	5861	5904	11959;11960;11961;11962	11960					0.008180468229056714
KFNPVSFTW	9	Unmodified	_KFNPVSFTW_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2902221679688	2	563.290017	1124.56548	0.35398	0.00019939	0.41902	0.00023603	0.773	0.00043542	563.2899798788015	68.539	1.987	68.603	68.408	70.395	0.063507					154	77	4	0	0	0	8.9172E-06	6	15832	15792;15832;15881;15925;15988;16032		149.91	120.83	1	3579400			8753	2270	5861	5904	11963;11964;11965;11966;11967;11968	11964					0.008180468229056714
KFQCSPFKIL	10	Unmodified	_KFQCSPFKIL_					0	0	0		ENST00000370035.7_1_1:109179974-109180055:+|nuORF	ENST00000370035.7_1_1:109179974-109180055:+|nuORF	ENST00000370035.7_1_1:109179974-109180055:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.21551513671875	3	404.22661	1209.658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.736	1	31.81	31.31	32.31	0.073782								0	0	0	0.33959	1	4690	4690		0.69767	0.46182	1				8754	6200	5862	5905	11969	11969					0.06155808564790277
KFQLTMRWR	9	Unmodified	_KFQLTMRWR_					0	0	0		ENST00000555012.1_3_14:67826571-67826840:-|nuORF;ENST00000216442.11_1_14:67826747-67826840:-|nuORF	ENST00000555012.1_3_14:67826571-67826840:-|nuORF	ENST00000555012.1_3_14:67826571-67826840:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3690795898438	2	633.350417	1264.68628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.43	1	88.43	87.93	88.93	0								0	0	0	0.27782	1	22028	22028		3.5965	0.31518	1				8755	5793	5863	5906	11970	11970					0.06452551264692374
KFQTAVTEP	9	Unmodified	_KFQTAVTEP_					0	0	0			REV__nc|ENSG00000197879|O00159-2|MYO1C	REV__nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7717590332031	2	510.771657	1019.52876	-0.035198	-1.7978E-05	0.0034104	1.7419E-06	-0.031788	-1.6236E-05	510.7715104313766	24.625	0.60544	24.721	24.499	25.105	0.096073					97	53	3	0	0	0	0.33849	1	2573	2573		1.6526	0	1	85813	+		8756	10874	5864	5907	11971	11971					0.019777502063334396
KFQVMYRRIL	10	Unmodified	_KFQVMYRRIL_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.9324035644531	3	451.932309	1352.7751	0.68319	0.00030876	0.21646	9.7827E-05	0.89966	0.00040658	451.93230680483066	92.433	1.62	92.433	91.815	93.435	0					189	61	4	0	0	0	0.46608	1	23433	23433		1.7423	0	1	468520			8757	2759	5865	5908	11972	11972					0.11281966504407137
KFQVMYRRIL	10	Unmodified	_KFQVMYRRIL_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.9325866699219	3	451.932309	1352.7751	0.52412	0.00023687	0.39452	0.00017829	0.91864	0.00041516	451.9323711189816	94.151	2.1279	94.151	93.339	95.467	0					292	94	4	0	0	0	0.45773	2	23848	23624;23848		3.3196	1.5923	1	1370700			8758	2759	5865	5908	11973;11974	11974					0.11281966504407137
KFRQDQPGFP	10	Unmodified	_KFRQDQPGFP_					0	0	0			REV__ENST00000531489.1_1_11:34357135-34357432:-|nuORF	REV__ENST00000531489.1_1_11:34357135-34357432:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.2921752929688	2	610.314554	1218.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.462	1	65.529	65.029	66.029	0.066872								0	0	0	0.33711	1	14880	14880		3.5965	0	1		+		8759	12359	5866	5909	11975	11975					0.01399335111864275
KFRYNELMQ	9	Unmodified	_KFRYNELMQ_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7928466796875	2	614.81079	1227.60703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.834	1	73.834	73.334	74.334	0								0	0	0	0.16041	1	17576	17576		24.021	6.9077	1				8760	5416	5867	5910	11976	11976					0.002328595199060146
KFRYNELMQ	9	Unmodified	_KFRYNELMQ_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.793212890625	2	614.81079	1227.60703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.008	1	74.008	73.508	74.508	0								0	0	0	0.19984	1	17629	17629		18.146	5.1039	1				8761	5416	5867	5910	11977	11977					0.002328595199060146
KFSTSFWY	8	Unmodified	_KFSTSFWY_					0	0	0			REV__ENSG00000256797|ENST00000535540|KLRF2	REV__ENSG00000256797|ENST00000535540|KLRF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.25732421875	2	533.255643	1064.49673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.92	1	105.95	105.45	106.45	0.029739								0	0	0	0.38822	1	27112	27112		0.79363	0	1		+		8762	11099	5868	5911	11978	11978					-0.032936174768110504
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2728881835938	2	512.794935	1023.57532	0.22418	0.00011496	-0.085014	-4.3595E-05	0.13917	7.1365E-05	512.7948052891127	36.216	0.80759	36.298	36.112	36.92	0.081715					52	33	3	0	0	0	0.25052	1	6012	6012		9.544	3.8121	1	124060			8763	3742	5869	5912	11979	11979					0.0644723482827203
KFTVQRTDP	9	Unmodified	_KFTVQRTDP_					0	0	0		nc|ENSG00000163531|O94856|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-7|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-6|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-4|NFASC;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;ENST00000492085.1_1_1:204956601-204966704:+|nuORF;ENST00000495396.5_1_1:204956439-204985664:+|nuORF;ENST00000404977.6_1_1:204951067-204978869:+|nuORF;NFASC|p.V893M|1|0.26|ENSG00000163531|chr1:204988716-204988716|G/A|missense_variant	nc|ENSG00000163531|O94856|NFASC	nc|ENSG00000163531|O94856|NFASC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2955322265625	2	546.29583	1090.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.22	1	94.258	93.758	94.758	0.038086								0	0	0	0.27782	1	23628	23628		3.5965	0.31518	1				8764	3915	5870	5913	11980	11980					0.03544243846226891
KFVKKESQF	9	Unmodified	_KFVKKESQF_					0	0	0			REV__ENSG00000198146|ENST00000356321|ZNF770	REV__ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8062133789062	2	570.824224	1139.63389	0.40378	0.00023049	2.02	0.001153	2.4237	0.0013835	570.8247097326284	57.411	0.3303	57.411	57.267	57.597	0					18	11	2	0	0	0	0.25979	1	12548	12548		11.64	0	1	61079	+		8765	10886	5871	5914	11981	11981					0.06966291402773095
KFVLQILYLSF	11	Unmodified	_KFVLQILYLSF_					0	0	0			REV__nc|ENSG00000166881|O14524-2|NEMP1	REV__nc|ENSG00000166881|O14524-2|NEMP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.60797119140625	3	457.607596	1369.80096	0.55422	0.00025361	0.91637	0.00041934	1.4706	0.00067295	457.6079405089074	91.662	0.66902	91.662	91.319	91.988	0					41	24	2	0	0	0	0.4167	1	23058	23058		0.50596	0.051438	1	121940	+		8766	10097	5872	5915	11982	11982					0.1308513922763268
KFWDYLQEF	9	Unmodified	_KFWDYLQEF_					0	0	0		ENST00000475780.5_1_1:171285408-171306524:+|nuORF;ENST00000462992.1_1_1:171292253-171302174:+|nuORF;ENSG00000076258|ENST00000367749|FMO4	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.305908203125	2	638.305864	1274.59717	0.31579	0.00020157	0.55186	0.00035226	0.86766	0.00055383	638.3058241757941	79.299	0.29426	79.299	79.13	79.424	0					20	9	3	0	0	0	0.075576	1	19256	19256		37.771	18.409	1	143770			8767	839	5873	5916	11983	11983					-0.02914005213801829
KFWDYLQEF	9	Unmodified	_KFWDYLQEF_					0	0	0		ENST00000475780.5_1_1:171285408-171306524:+|nuORF;ENST00000462992.1_1_1:171292253-171302174:+|nuORF;ENSG00000076258|ENST00000367749|FMO4	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.80810546875	2	638.305864	1274.59717	0.16867	0.00010766	-0.63558	-0.00040569	-0.46691	-0.00029803	638.3049699370953	79.269	0.31184	79.295	79.126	79.437	0.026436					22	10	3	0	0	0	0.075576	1	19084	19084		37.771	21.622	1	111200			8768	839	5873	5916	11984	11984					-0.02914005213801829
KFWKKIEE	8	Unmodified	_KFWKKIEE_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.3140258789062	2	554.313492	1106.61243	0.49539	0.0002746	3.0266	0.0016777	3.522	0.0019523	554.3148285441148	108.17	0.074692	108.19	108.15	108.22	0.022224					14	9	2	0	0	0	0.53494	1	27695	27695		4.756	1.1595	1	1883300			8769	1809	5874	5917	11985	11985					0.0633890637402601
KFWRKKSY	8	Unmodified	_KFWRKKSY_					0	0	0			REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.8269653320312	2	571.827101	1141.63965	0.17666	0.00010102	-0.61783	-0.00035329	-0.44117	-0.00025227	571.8266872823486	49.632	0.72855	49.709	49.512	50.24	0.076607					63	25	4	0	0	0	0.53894	1	10164	10164		2.0598	0.57785	1	448370	+		8770	13095	5875	5918	11986	11986					0.07449434705085878
KFYATWYSI	9	Unmodified	_KFYATWYSI_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.79736328125	2	589.797675	1177.5808	0.03599	2.1227E-05	-0.49031	-0.00028918	-0.45432	-0.00026796	589.7974479668153	33.121	0.74492	33.121	32.856	33.601	0					43	28	2	0	0	0	0.259	1	5231	5231		1.6526	0	1	29205	+		8771	13104	5876	5919	11987	11987					-0.0008908637992135482
KFYEERSISS	10	Unmodified	_KFYEERSISS_					0	0	0			REV__ENSG00000175874|ENST00000324768|CREG2	REV__ENSG00000175874|ENST00000324768|CREG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8751220703125	3	415.875182	1244.60372	-0.28412	-0.00011816	0.61244	0.0002547	0.32832	0.00013654	415.8755199806777	28.979	1.049	29.057	28.7	29.749	0.078289					109	65	2	0	0	0	0.47199	1	3842	3842		0.62683	0.063655	1	37882	+		8772	10390	5877	5920	11988	11988					-0.00880112053096127
KFYEERSISS	10	Unmodified	_KFYEERSISS_					0	0	0			REV__ENSG00000175874|ENST00000324768|CREG2	REV__ENSG00000175874|ENST00000324768|CREG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.87542724609375	3	415.875182	1244.60372	-0.25382	-0.00010556	0.67222	0.00027956	0.4184	0.000174	415.8754434947641	31.071	1.4739	31.144	30.578	32.052	0.073782					100	75	2	0	0	0	0.31853	1	4487	4487		0.62683	0.063655	1	50368	+		8773	10390	5877	5920	11989	11989					-0.00880112053096127
KFYTDPSYF	9	Unmodified	_KFYTDPSYF_					0	0	0		ENSG00000132970|ENST00000335327|WASF3;nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3	ENSG00000132970|ENST00000335327|WASF3	ENSG00000132970|ENST00000335327|WASF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.8405151367188	2	584.27149	1166.52843	0.53511	0.00031265	0.48996	0.00028627	1.0251	0.00059892	584.2718317691996	57.149	0.99096	57.149	56.916	57.907	0					62	35	3	0	0	0	0.25052	1	12446	12446		8.7454	1.4562	1	460870			8774	2608	5878	5921	11990	11990					-0.0481766951352256
KFYTDPSYF	9	Unmodified	_KFYTDPSYF_					0	0	0		ENSG00000132970|ENST00000335327|WASF3;nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3	ENSG00000132970|ENST00000335327|WASF3	ENSG00000132970|ENST00000335327|WASF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2720336914062	2	584.27149	1166.52843	0.73172	0.00042752	-0.013775	-8.0482E-06	0.71794	0.00041947	584.2714169768649	57.069	0.55448	57.137	56.945	57.5	0.068375					49	21	3	0	0	0	0.012041	1	12342	12342		63.961	45.826	1	457160			8775	2608	5878	5921	11991	11991					-0.0481766951352256
KGAAIFFEF	9	Unmodified	_KGAAIFFEF_					0	0	0		nc|ENSG00000186063|Q96BJ3-2|AIDA;ENST00000514881.1_1_4:159199390-159199825:+|nuORF;ENST00000456674.1_1_2:11448506-11449064:+|nuORF;ENSG00000186063|ENST00000340020|AIDA	nc|ENSG00000186063|Q96BJ3-2|AIDA	nc|ENSG00000186063|Q96BJ3-2|AIDA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7654418945312	2	515.273835	1028.53312	0.12154	6.2627E-05	0.95257	0.00049083	1.0741	0.00055346	515.2743939887815	73.462	0.69142	73.462	73.228	73.92	0					52	24	3	0	0	0	0.064501	1	17477	17477		56.177	36.738	1	1023300			8776	5065	5879	5922	11992	11992					0.01999259419903865
KGAAIFFEF	9	Unmodified	_KGAAIFFEF_					0	0	0		nc|ENSG00000186063|Q96BJ3-2|AIDA;ENST00000514881.1_1_4:159199390-159199825:+|nuORF;ENST00000456674.1_1_2:11448506-11449064:+|nuORF;ENSG00000186063|ENST00000340020|AIDA	nc|ENSG00000186063|Q96BJ3-2|AIDA	nc|ENSG00000186063|Q96BJ3-2|AIDA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7655639648438	2	515.273835	1028.53312	0.2803	0.00014443	1.4331	0.00073842	1.7134	0.00088285	515.2748847726995	73.359	0.46219	73.411	73.239	73.701	0.052574					45	18	3	0	0	0	0.081719	1	17314	17314		49.933	38.293	1	1112500			8777	5065	5879	5922	11993	11993					0.01999259419903865
KGAAVYFLF	9	Unmodified	_KGAAVYFLF_					0	0	0		ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2850341796875	2	508.284203	1014.55385	0.078175	3.9735E-05	0.82353	0.00041859	0.9017	0.00045832	508.28438426850795	71.863	0.85892	71.863	71.64	72.499	0					69	29	3	0	0	0	0.092418	3	16951	16951;17002;17061		34.102	14.845	1	785730			8778	6325	5880	5923	11994;11995;11996	11994					0.04715849799572425
KGAAVYFLF	9	Unmodified	_KGAAVYFLF_					0	0	0		ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.28509521484375	2	508.284203	1014.55385	0.13034	6.6252E-05	0.78848	0.00040077	0.91883	0.00046703	508.28445334433684	71.778	0.8035	71.834	71.597	72.401	0.055931					64	28	4	0	0	0	0.12809	2	16775	16775;16828		26.884	12.302	1	1014900			8779	6325	5880	5923	11997;11998	11997					0.04715849799572425
KGAAVYFLF	9	Unmodified	_KGAAVYFLF_					0	0	0		ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.28369140625	2	508.284203	1014.55385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.069	1	72.125	71.625	72.625	0.055939								0	0	0	0.20792	1	16883	16883		16.942	3.4344	1				8780	6325	5880	5923	11999	11999					0.04715849799572425
KGAGGGCG	8	Unmodified	_KGAGGGCG_					0	0	0			REV__ENST00000484246.5_1_13:115047189-115048344:+|nuORF	REV__ENST00000484246.5_1_13:115047189-115048344:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3697509765625	1	606.266421	605.259145	0.60208	0.00036502	2.2569	0.0013683	2.859	0.0017333	606.2681418564974	88.904	0.19197	88.904	88.791	88.982	0					8	6	2	0	0	0	0.3576	1	22141	22141		0	0	1	16604	+		8781	10161	5881	5924	12000	12000					-0.059274618910194476
KGDFTYYCN	9	Unmodified	_KGDFTYYCN_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.734619140625	2	555.731674	1109.4488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.837	1	25.928	25.428	26.428	0.091507								0	0	0	0.28807	1	2961	2961		1.4819	0.28856	1		+		8782	8125	5882	5925	12001	12001					-0.10155059459179938
KGFIPEDL	8	Unmodified	_KGFIPEDL_					0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.1719970703125	2	459.750193	917.485833	-0.23752	-0.0001092	-1.5929	-0.00073232	-1.8304	-0.00084152	459.75097725274026	26.962	0.47534	27.048	26.939	27.414	0.0867					47	32	2	0	0	0	0.3576	1	3311	3311		0.69038	0	1	18389			8783	3082	5883	5926	12002	12002					0.023789801488874218
KGFRRRAHL	9	Unmodified	_KGFRRRAHL_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.84814453125	2	570.84669	1139.67883	-0.086899	-4.9606E-05	2.8998	0.0016553	2.8129	0.0016057	570.8482538417967	109.8	0.089066	109.8	109.77	109.86	0					16	13	2	0	0	0	0.29576	1	28244	28244		7.2892	1.0834	1	1381400			8784	5585	5884	5927	12003	12003					0.11457579779312255
KGGWPQVC	8	Unmodified	_KGGWPQVC_					0	0	0			REV__ENST00000423414.5_1_7:130668839-130792560:-|nuORF	REV__ENST00000423414.5_1_7:130668839-130792560:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7143249511719	2	437.71563	873.416708	0.3715	0.00016261	-0.93322	-0.00040848	-0.56172	-0.00024587	437.7151183930548	99.699	0.54974	99.742	99.553	100.1	0.042839					55	35	2	0	0	0	0.53858	1	25365	25365		2.3027	1.5091	1	738080	+		8785	11820	5885	5928	12004	12004					-0.025063823516575212
KGKMPLRGPL	10	Unmodified	_KGKMPLRGPL_					0	0	0		ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.8352661132812	2	548.836611	1095.65867	0.0065077	3.5717E-06	-2.0741	-0.0011383	-2.0675	-0.0011347	548.8351162519003	109.82	0.21166	109.82	109.76	109.97	0					40	30	2	0	0	0	0.42335	1	28241	28241		9.3831	1.473	1	2205300			8786	5338	5886	5929	12005	12005					0.11466648004488889
KGPNQGRL	8	Unmodified	_KGPNQGRL_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2505187988281	2	435.251226	868.487899	0.26821	0.00011674	-0.35281	-0.00015356	-0.084598	-3.6821E-05	435.2509318002366	74.024	1.9239	74.072	73.437	75.361	0.048538					173	70	3	0	0	0	0.53423	1	17318	17318		5.2307	0	1	602470			8787	5117	5887	5930	12006	12006					0.048394536773685104
KGPNQGRL	8	Unmodified	_KGPNQGRL_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	435.251226	868.487899	0.50424	0.00021947	-0.61078	-0.00026584	-0.10654	-4.637E-05	435.25082375505605	73.983	2.3168	73.983	73.446	75.763	0	-0.044437	-0.00010356	NaN	5.2307	195	87	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586360			8788	5117	5887	5930							0.048394536773685104
KGPNVNKLN	9	Unmodified	_KGPNVNKLN_					0	0	0			REV__ENSG00000145794|ENST00000503335|MEGF10	REV__ENSG00000145794|ENST00000503335|MEGF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.28546142578125	2	492.285266	982.555979	0.33769	0.00016624	0.24039	0.00011834	0.57808	0.00028458	492.2852535841505	88.944	0.66833	88.944	88.679	89.347	0					59	26	3	0	0	0	0.30005	1	22207	22207		6.7232	0.51738	1	683420	+		8789	9526	5888	5931	12007	12007					0.06400278537364557
KGPRGPTR	8	Unmodified	_KGPRGPTR_					0	0	0		nc|ENSG00000228727|Q5SSQ6|SAPCD1;ENSG00000228727|ENST00000415669|SAPCD1	nc|ENSG00000228727|Q5SSQ6|SAPCD1	nc|ENSG00000228727|Q5SSQ6|SAPCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.75921630859375	2	434.759218	867.503883	0.63957	0.00027806	-0.60542	-0.00026321	0.034157	1.485E-05	434.758908244329	82.61	1.1722	82.61	82.313	83.485	0					92	40	4	0	0	0	0.53118	1	20227	20227		7.2892	0	1	2222400			8790	5613	5889	5932	12008	12008					0.06483159914273529
KGPRQRTT	8	Unmodified	_KGPRQRTT_					0	0	0			REV__ENST00000524263.5_1_8:37968258-37975025:+|nuORF	REV__ENST00000524263.5_1_8:37968258-37975025:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2748718261719	2	472.275232	942.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.129	1	94.129	93.629	94.629	0								0	0	0	0.38822	1	23759	23759		2.3027	0	1		+		8791	9042	5890	5933	12009	12009					0.06234527597405304
KGRLTPYADGF	11	Unmodified	_KGRLTPYADGF_					0	0	0		APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.8221435546875	2	612.822212	1223.62987	0.14809	9.0755E-05	-0.061468	-3.7669E-05	0.086626	5.3086E-05	613.3233372617694	57.911	0.28885	57.911	57.71	57.999	0					23	9	3	0	0	0	0.36864	1	12718	12718		10.151	0	1	143520			8792	44	5891	5934	12010	12010					0.027002019090105023
KGRLTPYADGF	11	Unmodified	_KGRLTPYADGF_					0	0	0		APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	612.822212	1223.62987	0.14809	9.0755E-05	-0.061468	-3.7669E-05	0.086626	5.3086E-05	613.3233372617694	57.911	0.28885	57.911	57.71	57.999	0	0.039002	0.00015576	NaN	10.151	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143520			8793	44	5891	5934							0.027002019090105023
KGRLTPYADGF	11	Unmodified	_KGRLTPYADGF_					0	0	0		APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	612.822212	1223.62987	0.16709	0.00010239	-0.33217	-0.00020356	-0.16509	-0.00010117	612.8220938754463	57.764	0.24815	57.833	57.752	58	0.068375	-0.039002	-0.00017603	NaN	10.151	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143280			8794	44	5891	5934							0.027002019090105023
KGSGGNAG	8	Unmodified	_KGSGGNAG_					0	0	0		ENST00000550686.1_1_2:172952281-172952982:+|nuORF;ENSG00000144355|ENST00000361725|DLX1	ENST00000550686.1_1_2:172952281-172952982:+|nuORF	ENST00000550686.1_1_2:172952281-172952982:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.3099975585938	1	647.310729	646.303452	0.39593	0.00025629	-1.8004	-0.0011654	-1.4045	-0.00090914	647.3094463062104	99.211	0.23055	99.254	99.166	99.396	0.042831					18	13	2	0	0	0	0.54199	1	25134	25134		0	0	1	97749			8795	3203	5892	5935	12011	12011					-0.033847344731952944
KGTGKPLEVNF	11	Unmodified	_KGTGKPLEVNF_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3220825195312	2	595.332413	1188.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.911	1	68.911	68.411	69.411	0								0	0	0	0.26914	1	16074	16074		18.373	3.1246	1				8796	5236	5893	5936	12012	12012					0.06349372568843137
KGYEDWLL	8	Unmodified	_KGYEDWLL_					0	0	0		ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	ENST00000513398.1_1_11:66314411-66328094:+|nuORF	ENST00000513398.1_1_11:66314411-66328094:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2616577148438	2	512.260925	1022.5073	0.3286	0.00016833	1.3136	0.00067288	1.6422	0.00084121	512.2615540939661	82.267	0.88548	82.288	82.018	82.904	0.021744					71	31	3	0	0	0	0.50815	1	20093	20093		11.64	11.64	1	289570			8797	5675	5894	5937	12013	12013					-0.0030563482238221695
KHALLLKVIK	10	Unmodified	_KHALLLKVIK_					0	0	0			REV__nc|ENSG00000132466|O75179-4|ANKRD17	REV__nc|ENSG00000132466|O75179-4|ANKRD17	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.9075317382812	2	581.905351	1161.79615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.55	1	112.55	112.05	113.05	0								0	0	0	0.33892	1	28835	28835		1.4819	0	1		+		8798	9117	5895	5938	12014	12014					0.22172299875546742
KHAPIAVP	8	Unmodified	_KHAPIAVP_					0	0	0			REV__ENST00000495648.3_1_2:39499422-39505556:-|nuORF	REV__ENST00000495648.3_1_2:39499422-39505556:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.75482177734375	2	416.755613	831.496673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.4	1	64.469	63.969	64.969	0.06913								0	0	0	0.38822	1	14558	14558		0.79363	0	1		+		8799	7984	5896	5939	12015	12015					0.07418427313837128
KHAQFKLELF	10	Unmodified	_KHAQFKLELF_					0	0	0		ENST00000439964.1_1_2:64871847-64873778:+|nuORF	ENST00000439964.1_1_2:64871847-64873778:+|nuORF	ENST00000439964.1_1_2:64871847-64873778:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.859375	2	630.858598	1259.70264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.059	1	68.059	67.559	68.559	0								0	0	0	0.33877	1	15817	15817		1.6526	0	1				8800	6521	5897	5940	12016	12016					0.083179557024323
KHCGRPQGPL	10	Unmodified	_KHCGRPQGPL_					0	0	0		SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|45|3|sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|26|2|sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|11|1|sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|15|1|sense;SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|43|3|sense;nc|ENSG00000116678|P48357-3|LEPR	SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense	SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7915649414062	2	546.790192	1091.56583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.315	1	27.315	26.815	27.815	0								0	0	0	0.33877	1	3511	3511		1.6526	0	1				8801	13405	5898	5941	12017	12017					0.023711432711024827
KHCSYQDIL	9	Unmodified	_KHCSYQDIL_					0	0	0		ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2565307617188	2	553.768591	1105.52263	0.093749	5.1915E-05	0.30808	0.0001706	0.40183	0.00022252	553.7688718652039	27.353	0.47154	27.44	26.993	27.465	0.086699					49	31	2	0	0	0	0.33978	1	3391	3391		1.4819	0.79152	1	69727			8802	3694	5899	5942	12018	12018					-0.02591091296835657
KHIPYISNY	9	Unmodified	_KHIPYISNY_					0	0	0			REV__ENSG00000075223|ENST00000265361|SEMA3C	REV__ENSG00000075223|ENST00000265361|SEMA3C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7279663085938	2	567.800749	1133.58694	0.76582	0.00043483	1.3629	0.00077387	2.1287	0.0012087	567.802354747926	80.776	2.9438	80.776	80.079	83.023	0					131	52	5	0	0	0	0.2418	1	19923	19923		13.906	6.6168	1	587710	+		8803	8190	5900	5943	12019	12019					0.025494318515939085
KHPAQIYG	8	Unmodified	_KHPAQIYG_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2480773925781	2	457.248152	912.481751	0.0044393	2.0298E-06	-0.08183	-3.7416E-05	-0.07739	-3.5387E-05	457.2480402175006	32.147	1.4213	32.147	31.957	33.378	0					125	60	3	0	0	0	0.53858	1	5011	5011		2.3027	0	1	361570	+		8804	9824	5901	5944	12020	12020					0.022009354458418784
KHPLAPCG	8	Unmodified	_KHPLAPCG_					0	0	0			REV__ENSG00000008311|ENST00000417368|AASS	REV__ENSG00000008311|ENST00000417368|AASS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.77484130859375	2	411.718173	821.421793	0.14215	5.8527E-05	2.8956	0.0011922	3.0377	0.0012507	411.71982268124117	109.61	0.039764	109.61	109.59	109.63	0					5	3	2	0	0	0	0.3576	1	28201	28201		5.2307	2.6532	1	44097	+		8805	7961	5902	5945	12021	12021					0.00393921510965356
KHPRMINKK	9	Unmodified	_KHPRMINKK_					0	0	0		SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|17|1|sense;SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|31|2|sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|43|3|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|45|3|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|28|2|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|45|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|18|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|30|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|28|2|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|21|1|sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|28|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|39|3|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|28|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|46|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|14|1|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|17|1|sense;SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|48|3|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|27|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|14|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|44|3|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|16|1|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|45|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|32|2|sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|17|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|41|3|sense	SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense	SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.84228515625	2	576.345135	1150.67572	0.66383	0.0003826	-1.7821	-0.0010271	-1.1182	-0.0006445	576.3442679953804	85.295	0.7097	85.318	84.983	85.693	0.023132					53	28	2	0	0	0	0.25579	1	20891	20891		4.3292	0.38484	1	276520			8806	13411	5903	5946	12022	12022					0.10640568610278933
KHPRYWIM	8	Unmodified	_KHPRYWIM_					0	0	0		ENST00000380636.1_1_X:12993391-12993475:+|nuORF	ENST00000380636.1_1_X:12993391-12993475:+|nuORF	ENST00000380636.1_1_X:12993391-12993475:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8184814453125	2	565.800029	1129.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.12	1	28.202	27.702	28.702	0.082134								0	0	0	0.38822	1	3618	3618		0.69038	0	1				8807	6287	5904	5947	12023	12023					0.02589519281855246
KHQKYRRY	8	Unmodified	_KHQKYRRY_					0	0	0			REV__nc|ENSG00000188732|A4D161-3|FAM221A	REV__nc|ENSG00000188732|A4D161-3|FAM221A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8299560546875	2	589.830706	1177.64686	-0.02303	-1.3584E-05	-0.98714	-0.00058224	-1.0102	-0.00059583	589.8299467313138	29.391	0.34102	29.391	29.275	29.616	0					32	17	2	0	0	0	0.54097	1	4092	4092		0.69038	0.088878	1	23210	+		8808	12864	5905	5948	12024	12024					0.06514167305522278
KHQKYRRY	8	Unmodified	_KHQKYRRY_					0	0	0			REV__nc|ENSG00000188732|A4D161-3|FAM221A	REV__nc|ENSG00000188732|A4D161-3|FAM221A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8303833007812	2	589.830706	1177.64686	-0.018373	-1.0837E-05	-1.2404	-0.0007316	-1.2587	-0.00074244	589.8299157043443	29.85	0.37678	29.85	29.678	30.055	0					26	17	2	0	0	0	0.54097	1	4294	4294		0.69038	0.088878	1	20075	+		8809	12864	5905	5948	12025	12025					0.06514167305522278
KHQKYRRY	8	Unmodified	_KHQKYRRY_					0	0	0			REV__nc|ENSG00000188732|A4D161-3|FAM221A	REV__nc|ENSG00000188732|A4D161-3|FAM221A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8297729492188	2	589.830706	1177.64686	-0.016075	-9.4818E-06	-0.96305	-0.00056803	-0.97912	-0.00057752	590.33175243444	30.413	0.42494	30.413	30.055	30.48	0					28	21	2	0	0	0	0.54097	1	4401	4401		0.69038	0.088878	1	14792	+		8810	12864	5905	5948	12026	12026					0.06514167305522278
KHQKYRRY	8	Unmodified	_KHQKYRRY_					0	0	0			REV__nc|ENSG00000188732|A4D161-3|FAM221A	REV__nc|ENSG00000188732|A4D161-3|FAM221A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.82958984375	2	589.830706	1177.64686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.53	1	30.53	30.03	31.03	0								0	0	0	0.38822	1	4454	4454		0.69038	0.088878	1		+		8811	12864	5905	5948	12027	12027					0.06514167305522278
KHQKYRRY	8	Unmodified	_KHQKYRRY_					0	0	0			REV__nc|ENSG00000188732|A4D161-3|FAM221A	REV__nc|ENSG00000188732|A4D161-3|FAM221A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8300170898438	2	589.830706	1177.64686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.24	1	31.24	30.74	31.74	0								0	0	0	0.38822	1	4665	4665		0.69038	0.088878	1		+		8812	12864	5905	5948	12028	12028					0.06514167305522278
KHQKYRRY	8	Unmodified	_KHQKYRRY_					0	0	0			REV__nc|ENSG00000188732|A4D161-3|FAM221A	REV__nc|ENSG00000188732|A4D161-3|FAM221A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	589.830706	1177.64686	0.08903	5.2513E-05	-1.3303	-0.00078468	-1.2413	-0.00073217	589.8299529770912	30.287	0.1219	30.362	30.325	30.447	0.075403	-0.0251	-0.00037411	NaN	0.69038	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10355	+		8813	12864	5905	5948							0.06514167305522278
KHRFGGLFP	9	Unmodified	_KHRFGGLFP_					0	0	0			REV__IQUB|p.I493Sfs*15|1|0.2|ENSG00000164675|chr7:123469318-123469318|T/-|frameshift_variant	REV__IQUB|p.I493Sfs*15|1|0.2|ENSG00000164675|chr7:123469318-123469318|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7216796875	2	529.798343	1057.58213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.782	1	20.782	20.282	21.282	0								0	0	0	0.29525	1	1691	1691		0	0	1		+		8814	10000	5906	5949	12029	12029					0.055645924995360474
KHRHQTKK	8	Unmodified	_KHRHQTKK_					0	0	0		nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;SLC4A4|p.V1042Sfs*5|1|0.3|ENSG00000080493|chr4:71563811-71563812|-/A|frameshift_variant;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;SLC4A4|p.N220K|1|0.23|ENSG00000080493|chr4:71357117-71357117|C/A|missense_variant	nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.817138671875	2	531.817599	1061.62064	0.39806	0.0002117	-0.89742	-0.00047726	-0.49935	-0.00026556	531.8170671636873	85.804	0.9053	85.804	85.503	86.408	0					61	37	2	0	0	0	0.53894	1	21379	21379		2.0598	0.86641	1	251030			8815	892	5907	5950	12030	12030					0.09229898134049108
KHYRWDRNF	9	Unmodified	_KHYRWDRNF_					0	0	0			REV__nc|ENSG00000111596|Q9NZN8-3|CNOT2	REV__nc|ENSG00000111596|Q9NZN8-3|CNOT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2226257324219	3	441.223139	1320.64759	-0.15041	-6.6363E-05	-0.61548	-0.00027156	-0.76589	-0.00033793	441.2228525181887	40.015	0.57026	40.103	39.905	40.475	0.088562					45	21	3	0	0	0	0.34898	1	7182	7182		0.26902	0.1097	1	63697	+		8816	8690	5908	5951	12031	12031					8.96195454060944E-05
KHYRWDRNF	9	Unmodified	_KHYRWDRNF_					0	0	0			REV__nc|ENSG00000111596|Q9NZN8-3|CNOT2	REV__nc|ENSG00000111596|Q9NZN8-3|CNOT2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	441.223139	1320.64759	-0.028833	-1.2722E-05	-0.8286	-0.0003656	-0.85743	-0.00037832	441.2228109650865	40.127	0.76044	40.127	39.954	40.714	0	0.01207	-0.00012495	NaN	0.26902	44	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51879	+		8817	8690	5908	5951							8.96195454060944E-05
KIAAYDEEIQ	10	Unmodified	_KIAAYDEEIQ_					0	0	0		nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2465209960938	2	590.298236	1178.58192	0.88461	0.00052219	2.5933	0.0015308	3.478	0.002053	590.2993167686526	66.555	0.19893	66.555	66.408	66.607	0					9	7	2	0	0	0	0.31616	1	15336	15336		10.074	1.4806	1	65639			8818	2448	5909	5952	12032	12032					-0.00022916801685823884
KIASNSATAF	10	Unmodified	_KIASNSATAF_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.2769470214844	2	505.269281	1008.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.102	1	52.102	51.602	52.602	0								0	0	0	0.3327	1	10952	10952		8.7454	2.0222	1				8819	3892	5910	5953	12033	12033					0.02008866063579262
KIDYLYLFYLL	11	Unmodified	_KIDYLYLFYLL_					0	0	0		tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.3085021972656	3	488.611007	1462.81119	0.42707	0.00020867	-1.0084	-0.00049269	-0.58129	-0.00028402	488.94483183496095	97.259	0.60675	97.3	96.983	97.589	0.040855					43	29	2	0	0	0	0.41359	1	24470	24470		1.2148	0.70888	1	57999			8820	13540	5911	5954	12034	12034					0.09829702162210197
KIDYLYLFYLL	11	Unmodified	_KIDYLYLFYLL_					0	0	0		tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	488.611007	1462.81119	0.3982	0.00019457	-0.59604	-0.00029123	-0.19783	-9.6663E-05	488.6106929495827	97.252	0.36169	97.252	97.077	97.438	0	-0.024147	0.00028047	NaN	1.2148	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55003			8821	13540	5911	5954							0.09829702162210197
KIEEEDLN	8	Unmodified	_KIEEEDLN_					0	0	0			REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2613220214844	2	495.242929	988.471305	0.34246	0.0001696	-0.091407	-4.5269E-05	0.25106	0.00012433	495.24285241115643	36.433	0.62487	36.433	36.208	36.833	0					50	23	3	0	0	0	0.3576	1	6151	6151		4.756	0	1	128660	+		8822	9290	5912	5955	12035	12035					-0.02339136789908025
KIEEEDLN	8	Unmodified	_KIEEEDLN_					0	0	0			REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.242929	988.471305	0.33203	0.00016444	0.012963	6.4201E-06	0.345	0.00017086	495.24287339871944	36.372	0.53146	36.454	36.259	36.79	0.081711	0.010488	5.1461E-05	NaN	4.756	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132260	+		8823	9290	5912	5955							-0.02339136789908025
KIEFICGDFLL	11	Unmodified	_KIEFICGDFLL_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;LYN-TGS1|1|fusion;LYN-TGS1|2|fusion	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.23358154296875	3	433.233542	1296.6788	0.46184	0.00020008	0.33048	0.00014317	0.79232	0.00034326	433.23363774314043	67.66	1.0405	67.724	67.318	68.359	0.063499					68	36	2	0	0	0	0.39319	1	15562	15562		5.8681	0.97113	1	233220			8824	2858	5913	5956	12036	12036					0.04232354153759843
KIEKVKSKR	9	Unmodified	_KIEKVKSKR_					0	0	0			REV__nc|ENSG00000111247|Q96B01-3|RAD51AP1	REV__nc|ENSG00000111247|Q96B01-3|RAD51AP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3848266601562	2	558.36659	1114.71863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.75	1	112.75	112.25	113.25	0								0	0	0	0.27935	1	28894	28894		3.2813	1.6287	1		+		8825	8683	5914	5957	12037	12037					0.1658566193934803
KIEREYHVEKK	11	Unmodified	_KIEREYHVEKK_					0	0	0		tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.27874755859375	3	486.940297	1457.79906	0.2303	0.00011214	2.2172	0.0010797	2.4475	0.0011918	487.2771460299372	47.329	0.7975	47.329	47.028	47.825	0					50	26	3	0	0	0	0.41359	1	9558	9558		1.2148	0	1	177400			8826	13513	5915	5958	12038	12038					0.08847478471716386
KIFQLIYFFH	10	Unmodified	_KIFQLIYFFH_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.5881042480469	3	452.588536	1354.74378	0.037343	1.6901E-05	-0.57642	-0.00026088	-0.53908	-0.00024398	452.5881604295763	35.315	0.61887	35.394	35.142	35.761	0.078827					57	23	3	0	0	0	0.47199	1	5726	5726		0.62683	0.12087	1	69247	+		8827	10866	5916	5959	12039	12039					0.08059716741922784
KIGECACKAC	10	Unmodified	_KIGECACKAC_					0	0	0			REV__ENST00000421454.2_1_21:36844398-36844554:-|nuORF	REV__ENST00000421454.2_1_21:36844398-36844554:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.230224609375	2	513.232473	1024.45039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.055	1	24.055	23.555	24.555	0								0	0	0	0.33905	1	2580	2580		1.3295	0.5359	1		+		8828	11813	5917	5960	12040	12040					-0.060854649664179306
KIHGCSSSS	9	Unmodified	_KIHGCSSSS_					0	0	0		ENST00000414369.2_1_2:53984069-54014663:-|nuORF	ENST00000414369.2_1_2:53984069-54014663:-|nuORF	ENST00000414369.2_1_2:53984069-54014663:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.20941162109375	2	453.210909	904.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.148	1	99.191	98.691	99.691	0.042839								0	0	0	0.28631	1	25129	25129		1.8442	0.19162	1				8829	6411	5918	5961	12041	12041					-0.04876195427834773
KIHRKNSVCH	10	Unmodified	_KIHRKNSVCH_					0	0	0		ENST00000272163.8_1_1:225607117-225607493:-|nuORF	ENST00000272163.8_1_1:225607117-225607493:-|nuORF	ENST00000272163.8_1_1:225607117-225607493:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.8930358886719	3	407.892624	1220.65604	0.20784	8.4777E-05	0.999	0.00040749	1.2068	0.00049226	407.89292652182183	74.725	0.61024	74.773	74.45	75.061	0.048546					72	21	4	0	0	0	0.47119	1	17638	17638		0.77653	0	1	880070			8830	5913	5919	5962	12042	12042					0.05454192599518137
KIIQVAVEL	9	Unmodified	_KIIQVAVEL_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.23358154296875	2	506.823692	1011.63283	0.4009	0.00020319	-0.28926	-0.0001466	0.11164	5.6583E-05	506.82351938806903	60.462	0.46014	60.462	60.26	60.72	0					26	16	2	0	0	0	0.14884	1	13479	13479		29.841	14.592	1	108410			8831	85	5920	5963	12043	12043					0.1274807703384795
KIIQVAVEL	9	Unmodified	_KIIQVAVEL_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8238830566406	2	506.823692	1011.63283	0.15772	7.9936E-05	0.2129	0.00010791	0.37062	0.00018784	506.8237004532006	60.32	0.26804	60.394	60.283	60.551	0.073421					15	8	2	0	0	0	0.10543	1	13328	13328		31.268	10.854	1	105750			8832	85	5920	5963	12044	12044					0.1274807703384795
KIIVPILIRIA	11	Unmodified	_KIIVPILIRIA_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.9440307617188	2	624.941934	1247.86931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.09	1	111.11	110.61	111.61	0.015678								0	0	0	0.34212	1	28330	28330		0	0	1				8833	3857	5921	5964	12045	12045					0.2552942859817904
KIKGSMRSKY	10	Unmodified	_KIKGSMRSKY_					0	0	0		tr|U7SSZ4|U7SSZ4_FUSNUPhosphoesteraseRecJdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01426PE=4SV=1	tr|U7SSZ4|U7SSZ4_FUSNUPhosphoesteraseRecJdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01426PE=4SV=1	tr|U7SSZ4|U7SSZ4_FUSNUPhosphoesteraseRecJdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01426PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2785034179688	2	599.342258	1196.66996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.184	1	78.184	77.684	78.684	0								0	0	0	0.33762	1	18910	18910		2.9952	0.26005	1				8834	13564	5922	5965	12046	12046					0.07949425307947422
KILQLIRIPL	10	Unmodified	_KILQLIRIPL_					0	0	0		nc|ENSG00000164037|Q4ZJI4-3|SLC9B1;ENSG00000164037|ENST00000296422|SLC9B1	nc|ENSG00000164037|Q4ZJI4-3|SLC9B1	nc|ENSG00000164037|Q4ZJI4-3|SLC9B1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.9204711914062	2	603.918458	1205.82236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.41	1	112.42	111.92	112.92	0.014595								0	0	0	0.33877	1	28673	28673		1.6526	0.17072	1				8835	3974	5923	5966	12047	12047					0.22768569047025267
KILRNWHPP	9	Unmodified	_KILRNWHPP_					0	0	0			REV__ENST00000515355.5_1_5:32586514-32588623:+|nuORF	REV__ENST00000515355.5_1_5:32586514-32588623:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8378295898438	2	580.838	1159.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.96	1	115.96	115.46	116.46	0								0	0	0	0.29233	1	29546	29546		0.6015	0	1		+		8836	12206	5924	5967	12048	12048					0.08800239453648828
KIMKQQEKIK	10	Unmodified	_KIMKQQEKIK_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3857421875	2	637.386665	1272.75878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.045	1	59.115	58.615	59.615	0.070477								0	0	0	0.33892	1	12931	12931		1.4819	0.28856	1				8837	2230	5925	5968	12049	12049					0.13330840547610023
KINADRYTGN	10	Unmodified	_KINADRYTGN_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-5|QKI	REV__nc|ENSG00000112531|Q96PU8-5|QKI	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.294921875	2	576.293819	1150.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.721	1	75.721	75.221	76.221	0								0	0	0	0.3327	1	18154	18154		8.7454	0.83525	1		+		8838	8716	5926	5969	12050	12050					0.003821543525191373
KIPHIWLML	9	Unmodified	_KIPHIWLML_					0	0	0		ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.843017578125	2	575.843905	1149.67326	0.35373	0.00020369	-1.3113	-0.00075513	-0.95761	-0.00055143	575.842903122291	88.66	0.56772	88.692	88.49	89.058	0.032257					52	24	3	0	0	0	0.31496	1	21961	21961		4.756	0	1	217190			8839	2296	5927	5970	12051	12051					0.10440720152610083
KIRPCPPPPS	10	Unmodified	_KIRPCPPPPS_					0	0	0			REV__ENST00000379593.1_1_X:20153944-20159910:-|nuORF	REV__ENST00000379593.1_1_X:20153944-20159910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.3056640625	2	546.305144	1090.59573	-0.36709	-0.00020054	2.136	0.0011669	1.769	0.00096639	546.3064289500207	15.824	0.16512	15.824	15.727	15.892	0					30	20	2	0	0	0	0.45627	1	618	618		3.5965	1.2938	1	25020	+		8840	11661	5928	5971	12052	12052					0.054060822164274214
KISDQSESSDL	11	Unmodified	_KISDQSESSDL_					0	0	0		nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	nc|ENSG00000085276|Q03112-8|MECOM	nc|ENSG00000085276|Q03112-8|MECOM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5268249511719	3	403.526218	1207.55683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.167	1	76.167	75.667	76.667	0								0	0	0	0.30951	1	18293	18293		9.2438	0	1				8841	956	5929	5972	12053	12053					-0.038650163948886984
KISPSKLLNK	10	Unmodified	_KISPSKLLNK_					0	0	0			REV__MAPKBP1|p.R17K|1|0.13|ENSG00000137802|chr15:41775325-41775325|G/A|missense_variant	REV__MAPKBP1|p.R17K|1|0.13|ENSG00000137802|chr15:41775325-41775325|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7886352539062	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.051	1	54.051	53.551	54.551	0								0	0	0	0.33916	1	11546	11546		1.1933	0.59184	1		+		8842	12729	5930	5973	12054	12054					0.14910839845242663
KITDVIIGF	9	Unmodified	_KITDVIIGF_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.303466796875	2	503.302593	1004.59063	0.40165	0.00020215	2.1748	0.0010946	2.5764	0.0012967	503.30394933422764	70.982	0.94699	70.982	70.555	71.502	0					68	32	3	0	0	0	0.023873	2	16684	16684;16741		55.503	21.101	1	676410			8843	1188	5931	5974	12055;12056	12055					0.08852101625473097
KITDVIIGF	9	Unmodified	_KITDVIIGF_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.3029479980469	2	503.302593	1004.59063	0.52293	0.00026319	2.3008	0.001158	2.8238	0.0014212	503.3041585014446	70.901	0.79311	70.96	70.775	71.569	0.058578					63	28	3	0	0	0	0.026809	2	16515	16515;16562		53.404	20.618	1	594130			8844	1188	5931	5974	12057;12058	12057					0.08852101625473097
KIVHGEDLICY	11	Unmodified	_KIVHGEDLICY_					0	0	0			REV__nc|ENSG00000095564|O14981-2|BTAF1	REV__nc|ENSG00000095564|O14981-2|BTAF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.77978515625	2	645.331556	1288.64856	0.27638	0.00017836	0.19094	0.00012322	0.46732	0.00030158	645.3313543647159	77.118	0.30754	77.118	76.867	77.175	0					14	10	2	0	0	0	0.3108	1	18534	18534		2.9952	1.151	1	163740	+		8845	8344	5932	5975	12059	12059					0.015779954886056657
KIWRPNRV	8	Unmodified	_KIWRPNRV_					0	0	0		ENST00000561781.1_1_16:675886-677619:+|nuORF;nc|ENSG00000197562|Q96S21-2|RAB40C;ENSG00000197562|ENST00000248139|RAB40C	ENST00000561781.1_1_16:675886-677619:+|nuORF	ENST00000561781.1_1_16:675886-677619:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.8240966796875	2	534.824892	1067.63523	-0.073206	-3.9152E-05	-1.0218	-0.00054648	-1.095	-0.00058564	534.8243233634356	29.378	0.3731	29.378	29.215	29.588	0					36	19	2	0	0	0	0.53858	1	4145	4145		2.3027	2.3027	1	46744			8846	5304	5933	5976	12060	12060					0.10411970282166294
KIWRPNRV	8	Unmodified	_KIWRPNRV_					0	0	0		ENST00000561781.1_1_16:675886-677619:+|nuORF;nc|ENSG00000197562|Q96S21-2|RAB40C;ENSG00000197562|ENST00000248139|RAB40C	ENST00000561781.1_1_16:675886-677619:+|nuORF	ENST00000561781.1_1_16:675886-677619:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	534.824892	1067.63523	0.12855	6.875E-05	-1.0841	-0.00057978	-0.95551	-0.00051103	534.8241681632962	29.27	0.35085	29.348	29.197	29.548	0.078289	-0.015225	-3.9578E-05	NaN	2.3027	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58579			8847	5304	5933	5976							0.10411970282166294
KIYKNVKNL	9	Unmodified	_KIYKNVKNL_					0	0	0			REV__tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1	REV__tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.27490234375	2	560.347866	1118.68118	-0.050935	-2.8541E-05	-0.13961	-7.8227E-05	-0.19054	-0.00010677	560.3477587458331	30.92	0.33536	30.92	30.812	31.148	0					25	15	2	0	0	0	0.25875	1	4565	4565		1.8442	0.19162	1	20224	+		8848	13280	5934	5977	12061	12061					0.1265857067376146
KIYNQYKII	9	Unmodified	_KIYNQYKII_					0	0	0			REV__tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1	REV__tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.8295288085938	2	591.847699	1181.68084	0.46268	0.00027383	-0.92304	-0.0005463	-0.46036	-0.00027246	591.8470112988067	60.736	0.6307	60.736	60.587	61.218	0					38	22	3	0	0	0	0.22344	1	13560	13560		15.847	1.9411	1	255350	+		8849	13228	5935	5978	12062	12062					0.09727150953904129
KIYVLQGEF	9	Unmodified	_KIYVLQGEF_					0	0	0		ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2898559570312	2	548.8055	1095.59645	0.55682	0.00030559	-0.14517	-7.9669E-05	0.41166	0.00022592	548.805552315057	63.73	0.7918	63.73	63.504	64.296	0					35	27	2	0	0	0	0.2298	1	14637	14637		16.942	4.4107	1	175930			8850	3894	5936	5979	12063	12063					0.052472001371370425
KIYVLQGEF	9	Unmodified	_KIYVLQGEF_					0	0	0		ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2899780273438	2	548.8055	1095.59645	0.51208	0.00028103	-0.34745	-0.00019068	0.16463	9.0348E-05	548.8053729165694	63.659	0.66662	63.73	63.477	64.143	0.071014					35	22	3	0	0	0	0.24263	1	14413	14413		12.532	0	1	190490			8851	3894	5936	5979	12064	12064					0.052472001371370425
KKAGKIGL	8	Unmodified	_KKAGKIGL_					0	0	0			REV__tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1	REV__tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.2804260253906	2	407.779088	813.543623	0.14887	6.0706E-05	-0.74043	-0.00030193	-0.59156	-0.00024122	407.7786191128432	112.56	0.81144	112.56	112.32	113.13	0					231	93	3	0	0	0	0.54081	1	28832	28832		0.79363	0	1	3200800	+		8852	13296	5937	5980	12065	12065					0.12939286864968835
KKAHVQKVTDF	11	Unmodified	_KKAHVQKVTDF_					0	0	0		ENST00000593859.5_1_19:51322452-51323394:-|nuORF;nc|ENSG00000167748|P06870-2|KLK1;ENSG00000167748|ENST00000301420|KLK1	ENST00000593859.5_1_19:51322452-51323394:-|nuORF	ENST00000593859.5_1_19:51322452-51323394:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.25128173828125	3	434.250583	1299.72992	0.44975	0.0001953	0.79653	0.00034589	1.2463	0.0005412	434.2508744812427	59.733	0.75836	59.733	59.36	60.119	0					41	29	2	0	0	0	0.40316	1	13317	13317		3.5927	0.52041	1	275390			8853	4229	5938	5981	12066	12066					0.09204439242853368
KKAKVRKK	8	Unmodified	_KKAKVRKK_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.3531188964844	2	493.353286	984.692019	0.33558	0.00016556	0.3069	0.00015141	0.64248	0.00031697	493.3533295277234	112.19	1.0199	112.2	111.86	112.88	0.014595					318	118	4	0	0	0	0.54097	1	28570	28570		0.69038	0	1	10373000	+		8854	10790	5939	5982	12067	12067					0.1990601783869579
KKAMEEEAL	9	Unmodified	_KKAMEEEAL_					0	0	0			REV__ENSG00000139537|ENST00000320516|CCDC65	REV__ENSG00000139537|ENST00000320516|CCDC65	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7726440429688	2	524.7708	1047.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.037	1	99.079	98.579	99.579	0.041931								0	0	0	0.26517	1	25097	25097		6.2058	0.47393	1		+		8855	9345	5940	5983	12068	12068					0.005183731260558488
KKAQSGGR	8	Unmodified	_KKAQSGGR_					0	0	0		nc|ENSG00000259802|P0DW81|MARCHF6-DT;ENST00000561606.1_1_5:10353444-10353579:-|nuORF	nc|ENSG00000259802|P0DW81|MARCHF6-DT	nc|ENSG00000259802|P0DW81|MARCHF6-DT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.24359130859375	2	416.243401	830.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.722	1	46.722	46.222	47.222	0								0	0	0	0.38822	1	9323	9323		4.756	0	1				8856	7157	5941	5984	12069	12069					0.050231671603341965
KKAQSGGR	8	Unmodified	_KKAQSGGR_					0	0	0		nc|ENSG00000259802|P0DW81|MARCHF6-DT;ENST00000561606.1_1_5:10353444-10353579:-|nuORF	nc|ENSG00000259802|P0DW81|MARCHF6-DT	nc|ENSG00000259802|P0DW81|MARCHF6-DT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2435607910156	2	416.243401	830.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.77	1	47.77	47.27	48.27	0								0	0	0	0.38822	1	9639	9639		2.3027	0	1				8857	7157	5941	5984	12070	12070					0.050231671603341965
KKARKKKV	8	Unmodified	_KKARKKKV_					0	0	0		ENST00000493902.5_1_16:31047079-31051121:+|nuORF;ENST00000487411.5_1_16:31045754-31051121:+|nuORF;nc|ENSG00000103496|Q12846-2|STX4;ENSG00000103496|ENST00000313843|STX4	ENST00000493902.5_1_16:31047079-31051121:+|nuORF	ENST00000493902.5_1_16:31047079-31051121:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.35357666015625	2	493.353286	984.692019	0.33558	0.00016556	0.3069	0.00015141	0.64248	0.00031697	493.3533295277234	112.19	1.0199	112.2	111.86	112.88	0.014595					318	118	4	0	0	0	0.54097	1	28682	28682		0.69038	0	1	10373000			8858	1374	5942	5985	12071	12071					0.1990601783869579
KKARKKKV	8	Unmodified	_KKARKKKV_					0	0	0		ENST00000493902.5_1_16:31047079-31051121:+|nuORF;ENST00000487411.5_1_16:31045754-31051121:+|nuORF;nc|ENSG00000103496|Q12846-2|STX4;ENSG00000103496|ENST00000313843|STX4	ENST00000493902.5_1_16:31047079-31051121:+|nuORF	ENST00000493902.5_1_16:31047079-31051121:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.3533935546875	2	493.353286	984.692019	0.32912	0.00016237	-0.3619	-0.00017854	-0.03278	-1.6172E-05	493.35298156898415	112.88	0.31674	112.89	112.87	113.18	0.013809					72	41	2	0	0	0	0.54097	1	28823	28823		0.69038	0	1	510990			8859	1374	5942	5985	12072	12072					0.1990601783869579
KKARKKKV	8	Unmodified	_KKARKKKV_					0	0	0		ENST00000493902.5_1_16:31047079-31051121:+|nuORF;ENST00000487411.5_1_16:31045754-31051121:+|nuORF;nc|ENSG00000103496|Q12846-2|STX4;ENSG00000103496|ENST00000313843|STX4	ENST00000493902.5_1_16:31047079-31051121:+|nuORF	ENST00000493902.5_1_16:31047079-31051121:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.353286	984.692019	0.033644	1.6598E-05	-1.0538	-0.00051989	-1.0201	-0.00050329	493.35213661875684	113.17	0.21201	113.17	113.12	113.33	0	0.13704	-0.00055844	NaN	0.69038	41	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84858			8860	1374	5942	5985							0.1990601783869579
KKASIVLAYT	10	Unmodified	_KKASIVLAYT_					0	0	0			REV__ENST00000422086.5_2_22:21362941-21363382:-|nuORF	REV__ENST00000422086.5_2_22:21362941-21363382:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3323974609375	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.8	1	100.8	100.3	101.3	0								0	0	0	0.33738	1	25792	25792		3.2813	1.4371	1		+		8861	11815	5943	5986	12073	12073					0.11167462062553568
KKCLSAPAI	9	Unmodified	_KKCLSAPAI_					0	0	0		nc|ENSG00000099810|Q13126-5|MTAP;nc|ENSG00000099810|Q13126-2|MTAP	nc|ENSG00000099810|Q13126-5|MTAP	nc|ENSG00000099810|Q13126-5|MTAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7774353027344	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.234	1	77.234	76.734	77.734	0								0	0	0	0.27613	1	18619	18619		3.9444	0	1				8862	7467	5944	5987	12074	12074					0.06923605922088427
KKELFTIGFK	10	Unmodified	_KKELFTIGFK_					0	0	0			REV__ENST00000551617.1_1_12:100599472-100601453:+|nuORF	REV__ENST00000551617.1_1_12:100599472-100601453:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.23358154296875	3	404.244658	1209.71214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.893	1	98.935	98.435	99.435	0.041931								0	0	0	0.33738	1	25055	25055		1.5923	0.63001	1		+		8863	12437	5945	5988	12075	12075					0.11567723988014222
KKELKKKAK	9	Unmodified	_KKELKKKAK_					0	0	0			REV__nc|ENSG00000182329|Q0VF49-2|KIAA2012	REV__nc|ENSG00000182329|Q0VF49-2|KIAA2012	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.87939453125	2	550.879333	1099.74411	0.41077	0.00022628	-0.084478	-4.6537E-05	0.32629	0.00017975	550.8791180810038	111.95	0.63422	111.97	111.81	112.45	0.014595					187	76	3	0	0	0	0.34754	2	28581	28581;28654		0.45834	0	1	4140300	+		8864	10559	5946	5989	12076;12077	12076					0.19823136461786817
KKELLIRII	9	Unmodified	_KKELLIRII_					0	0	0		tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1	tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1	tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3897094726562	2	563.389534	1124.76451	0.31036	0.00017485	0.32853	0.00018509	0.63888	0.00035994	563.3897046665537	111.18	0.78643	111.2	110.65	111.44	0.015678					183	114	2	0	0	0	0.34704	1	28345	28345		0.52476	0	1	732230			8865	13636	5947	5990	12078	12078					0.2071230712160741
KKEMVLQRFH	10	Unmodified	_KKEMVLQRFH_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.58294677734375	3	439.248297	1314.72306	0.24823	0.00010903	0.184	8.0822E-05	0.43223	0.00018986	439.24842598661365	53.091	0.69627	53.156	52.77	53.466	0.06543					43	32	2	0	0	0	0.31854	1	11020	11020		0.50596	0	1	89608			8866	4777	5948	5991	12079	12079					0.07828803090615111
KKERRVQRCP	10	Unmodified	_KKERRVQRCP_					0	0	0			REV__ENST00000412557.5_1_7:157130244-157151288:+|nuORF	REV__ENST00000412557.5_1_7:157130244-157151288:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.2547912597656	3	433.919062	1298.73536	0.37153	0.00016121	-3.6712	-0.001593	-3.2997	-0.0014318	434.2518279049362	99.529	0.29955	99.572	99.354	99.654	0.042839					26	20	2	0	0	0	0.3184	1	25230	25230		1.7423	0	1	387480	+		8867	11783	5949	5992	12080	12080					0.09793839553685757
KKEYSLDFF	9	Unmodified	_KKEYSLDFF_					0	0	0		tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8019409179688	2	588.800414	1175.58628	0.44243	0.0002605	-0.027426	-1.6148E-05	0.415	0.00024435	588.8004788689383	102.03	0.49059	102.03	101.85	102.34	0					58	34	2	0	0	0	0.3354	1	26118	26118		2.0598	0	1	111410			8868	13567	5950	5993	12081	12081					0.0055059241187791486
KKEYSLDFF	9	Unmodified	_KKEYSLDFF_					0	0	0		tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.81591796875	2	588.800414	1175.58628	0.66737	0.00039295	-0.59377	-0.00034961	0.073598	4.3334E-05	588.8001356430636	101.97	0.42917	102.02	101.88	102.31	0.042656					61	35	2	0	0	0	0.3354	1	25955	25955		2.0598	0	1	79720			8869	13567	5950	5993	12082	12082					0.0055059241187791486
KKFILYHFV	9	Unmodified	_KKFILYHFV_					0	0	0			REV__ENST00000370487.4_1_20:61431489-61431786:+|nuORF	REV__ENST00000370487.4_1_20:61431489-61431786:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8557739257812	2	597.855327	1193.6961	0.52715	0.00031516	1.1165	0.00066749	1.6436	0.00098265	597.8557831169587	85.344	0.73751	85.367	84.983	85.72	0.023132					76	29	3	0	0	0	0.25845	1	20992	20992		2.0598	0	1	499010	+		8870	11591	5951	5994	12083	12083					0.10700062541741318
KKFLNSQVI	9	Unmodified	_KKFLNSQVI_					0	0	0			REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.825927734375	2	538.826766	1075.63898	-0.12007	-6.4696E-05	-0.67135	-0.00036174	-0.79141	-0.00042644	538.8263355846624	44.5	0.61274	44.5	44.329	44.942	0					38	21	3	0	0	0	0.24767	1	8646	8646		13.042	0	1	114940	+		8871	7896	5952	5995	12084	12084					0.10418595265377917
KKFQDWYY	8	Unmodified	_KKFQDWYY_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2852783203125	2	589.287474	1176.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.632	1	14.632	14.132	15.132	0								0	0	0	0.38822	1	406	406		0.69038	0.28966	1				8872	2160	5953	5996	12085	12085					-0.020822570397285745
KKKAILTT	8	Unmodified	_KKKAILTT_					0	0	0		nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.8052062988281	2	451.805303	901.596052	0.17361	7.844E-05	-0.64306	-0.00029054	-0.46944	-0.0002121	451.8048348750026	112.4	0.65504	112.42	112.21	112.87	0.014595					211	72	3	0	0	0	0.54097	1	28630	28630		0.69038	0	1	4242900			8873	1171	5954	5997	12086	12086					0.14131825207925885
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8981323242188	2	626.392805	1250.77106	-0.24413	-0.00015292	4.1925	0.0026261	3.9483	0.0024732	626.3947605791575	107.63	0.064667	107.63	107.58	107.64	0					15	8	2	0	0	0	0.39569	1	27784	27784		5.2969	0	1	54055000			8874	6011	5955	5998	12087	12087					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.391357421875	2	626.392805	1250.77106	-0.24165	-0.00015137	-1.2686	-0.00079461	-1.5102	-0.00094598	626.3916048847376	107.95	0.16454	107.95	107.9	108.07	0					56	22	3	0	0	0	0.39569	1	27870	27870		5.2969	2.3016	1	19213000			8875	6011	5955	5998	12088	12088					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.896484375	2	626.392805	1250.77106	-0.24215	-0.00015168	1.7552	0.0010994	1.513	0.00094774	626.3936373725395	108.12	0.14201	108.12	108.03	108.17	0					43	20	3	0	0	0	0.39569	1	27891	27891		5.2969	0	1	15088000			8876	6011	5955	5998	12089	12089					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3937377929688	2	626.392805	1250.77106	-0.2411	-0.00015102	1.3504	0.00084586	1.1093	0.00069484	626.3933987703413	108.26	0.34805	108.26	108.15	108.5	0					97	48	3	0	0	0	0.39569	3	27906	27906;27934;27952		5.2969	1.3525	1	11616000			8877	6011	5955	5998	12090;12091;12092	12090					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3939208984375	2	626.392805	1250.77106	-0.24493	-0.00015342	2.1575	0.0013514	1.9126	0.001198	626.3940878746371	108.54	0.19343	108.54	108.43	108.62	0					47	28	2	0	0	0	0.39569	1	27965	27965		5.2969	0	1	6375700			8878	6011	5955	5998	12093	12093					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3946533203125	2	626.392805	1250.77106	-0.24104	-0.00015098	1.5498	0.00097079	1.3088	0.00081981	626.3937339211466	108.65	0.14784	108.65	108.58	108.72	0					42	21	3	0	0	0	0.39569	1	28021	28021		5.2969	0	1	3287700			8879	6011	5955	5998	12094	12094					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3928833007812	2	626.392805	1250.77106	-0.24112	-0.00015103	1.6132	0.0010105	1.3721	0.00085947	626.3937211905079	108.78	0.28772	108.78	108.7	108.99	0					104	44	3	0	0	0	0.39569	2	28047	28047;28059		5.2969	2.5617	1	2738400			8880	6011	5955	5998	12095;12096	12095					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.391357421875	2	626.392805	1250.77106	0.28702	0.00017979	-2.1269	-0.0013322	-1.8398	-0.0011525	626.3910149672843	107.97	0.13642	107.99	107.93	108.07	0.022224					48	19	3	0	0	0	0.39569	1	27643	27643		5.2969	2.3016	1	18601000			8881	6011	5955	5998	12097	12097					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.39208984375	2	626.392805	1250.77106	0.28416	0.00017799	0.64202	0.00040215	0.92617	0.00058015	626.3926793719507	108.26	0.21171	108.29	108.17	108.38	0.022224					70	29	3	0	0	0	0.39569	1	27699	27699		5.2969	0	1	10037000			8882	6011	5955	5998	12098	12098					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8934326171875	2	626.392805	1250.77106	0.28483	0.00017842	0.76021	0.00047619	1.045	0.00065461	626.3935104772615	108.36	0.13937	108.38	108.34	108.48	0.022224					30	18	3	0	0	0	0.39569	1	27739	27739		5.2969	0	1	6755300			8883	6011	5955	5998	12099	12099					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3924560546875	2	626.392805	1250.77106	0.28304	0.00017729	0.74591	0.00046723	1.0289	0.00064452	626.3925998752686	108.47	0.25002	108.49	108.45	108.7	0.022232					72	36	3	0	0	0	0.38555	3	27770	27770;27773;27790		7.609	4.6137	1	3099700			8884	6011	5955	5998	12100;12101;12102	12100					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3903198242188	2	626.392805	1250.77106	0.27896	0.00017474	-3.1962	-0.0020021	-2.9172	-0.0018273	626.3913386295668	108.78	0.11283	108.79	108.73	108.85	0.019409					23	15	3	0	0	0	0.39569	1	27824	27824		5.2969	0.39987	1	6201200			8885	6011	5955	5998	12103	12103					0.15570200282331825
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8895263671875	2	626.392805	1250.77106	0.28434	0.00017811	2.157	0.0013511	2.4414	0.0015292	626.8963572087392	108.97	0.42688	108.99	108.88	109.31	0.019409					74	61	2	0	0	0	0.31057	1	27884	27884		5.2969	2.0156	1	1945500			8886	6011	5955	5998	12104	12104					0.15570200282331825
KKKFPEDE	8	Unmodified	_KKKFPEDE_					0	0	0		tr|U7T8B2|U7T8B2_FUSNUArsRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00152PE=4SV=1	tr|U7T8B2|U7T8B2_FUSNUArsRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00152PE=4SV=1	tr|U7T8B2|U7T8B2_FUSNUArsRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00152PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.27288818359375	2	510.771657	1019.52876	-0.22074	-0.00011275	0.11801	6.0274E-05	-0.10273	-5.2472E-05	510.77160098516316	24.8	0.7401	24.8	24.571	25.311	0					105	56	3	0	0	0	0.53894	1	2739	2739		2.0598	1.2661	1	72049			8887	13743	5956	5999	12105	12105					0.019777502063334396
KKKGKAKKK	9	Unmodified	_KKKGKAKKK_					0	0	0		ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3742065429688	2	522.374218	1042.73388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.53	1	112.53	112.03	113.03	0								0	0	0	0.29525	1	28828	28828		0	0	1				8888	1515	5957	6000	12106	12106					0.21422573527206623
KKKHKKKLKQ	10	Unmodified	_KKKHKKKLKQ_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.4443359375	2	647.445706	1292.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.57	1	111.57	111.07	112.07	0								0	0	0	0.33877	1	28562	28562		1.6526	0.45928	1		+		8889	10274	5958	6001	12107	12107					0.24213580918444677
KKKKGKKKT	9	Unmodified	_KKKKGKKKT_					0	0	0		ENST00000497571.5_1_10:3819016-3819262:-|nuORF	ENST00000497571.5_1_10:3819016-3819262:-|nuORF	ENST00000497571.5_1_10:3819016-3819262:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.3795166015625	2	537.3795	1072.74445	0.48548	0.00026089	0.18259	9.8121E-05	0.66807	0.00035901	537.3794539873859	112.03	1.0116	112.04	111.86	112.87	0.014595					281	117	3	0	0	0	0.33704	1	28710	28710		1.8442	0	1	7156300			8890	6845	5959	6002	12108	12108					0.21098556181664208
KKKKKKKAA	9	Unmodified	_KKKKKKKAA_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.382080078125	2	529.382043	1056.74953	0.29797	0.00015774	0.39984	0.00021167	0.69782	0.00036941	529.3823461659931	109.12	0.24881	109.13	109.04	109.29	0.019402					56	34	2	0	0	0	0.35102	1	27903	27903		0	0	1	1083000	+		8891	8904	5960	6003	12109	12109					0.22342860044273039
KKKKKKKAA	9	Unmodified	_KKKKKKKAA_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3825073242188	2	529.382043	1056.74953	0.29723	0.00015735	0.10405	5.5084E-05	0.40128	0.00021243	529.3821989196223	109.34	0.36346	109.36	109.24	109.6	0.019402					68	40	2	0	0	0	0.35102	1	27934	27934		0	0	1	753220	+		8892	8904	5960	6003	12110	12110					0.22342860044273039
KKKKKKKAA	9	Unmodified	_KKKKKKKAA_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.347900390625	2	529.382043	1056.74953	0.29797	0.00015774	0.39984	0.00021167	0.69782	0.00036941	529.3823461659931	109.12	0.24881	109.13	109.04	109.29	0.019402					56	34	2	0	0	0	0.26021	1	27925	27925		0	0	1	1083000	+		8893	8904	5960	6003	12111	12111					0.22342860044273039
KKKKKKKGKL	10	Unmodified	_KKKKKKKGKL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.2999572753906	3	405.299209	1212.8758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.74	1	115.74	115.24	116.24	0								0	0	0	0.34018	1	29496	29496		0	0	1				8894	4599	5961	6004	12112	12112					0.27787366549569015
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3284606933594	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.751	1	22.751	22.251	23.251	0								0	0	0	0.34212	1	2218	2218		0	0	1				8895	6099	5962	6005	12113	12113					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3288269042969	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.893	1	22.893	22.393	23.393	0								0	0	0	0.34212	1	2259	2259		0	0	1				8896	6099	5962	6005	12114	12114					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32855224609375	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.019	1	23.019	22.519	23.519	0								0	0	0	0.34212	1	2291	2291		0	0	1				8897	6099	5962	6005	12115	12115					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3284912109375	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.261	1	23.261	22.761	23.761	0								0	0	0	0.34212	1	2360	2360		0	0	1				8898	6099	5962	6005	12116	12116					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3285217285156	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.393	1	23.393	22.893	23.893	0								0	0	0	0.34212	1	2395	2395		0	0	1				8899	6099	5962	6005	12117	12117					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.328369140625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.514	1	23.514	23.014	24.014	0								0	0	0	0.34212	1	2429	2429		0	0	1				8900	6099	5962	6005	12118	12118					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3285827636719	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.644	1	23.644	23.144	24.144	0								0	0	0	0.34212	1	2463	2463		0	0	1				8901	6099	5962	6005	12119	12119					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32830810546875	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.769	1	23.769	23.269	24.269	0								0	0	0	0.34212	1	2499	2499		0	0	1				8902	6099	5962	6005	12120	12120					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3285217285156	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.898	1	23.898	23.398	24.398	0								0	0	0	0.34212	1	2536	2536		0	0	1				8903	6099	5962	6005	12121	12121					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3285217285156	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.03	1	24.03	23.53	24.53	0								0	0	0	0.34212	1	2572	2572		0	0	1				8904	6099	5962	6005	12122	12122					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32867431640625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.151	1	24.151	23.651	24.651	0								0	0	0	0.34212	1	2604	2604		0	0	1				8905	6099	5962	6005	12123	12123					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3284606933594	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.276	1	24.276	23.776	24.776	0								0	0	0	0.34212	1	2639	2639		0	0	1				8906	6099	5962	6005	12124	12124					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.328125	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.423	1	24.423	23.923	24.923	0								0	0	0	0.34212	1	2680	2680		0	0	1				8907	6099	5962	6005	12125	12125					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32861328125	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.891	1	26.891	26.391	27.391	0								0	0	0	0.34212	1	3389	3389		0	0	1				8908	6099	5962	6005	12126	12126					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32867431640625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.995	1	27.995	27.495	28.495	0								0	0	0	0.34212	1	3707	3707		0	0	1				8909	6099	5962	6005	12127	12127					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3283996582031	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.22	1	28.22	27.72	28.72	0								0	0	0	0.34212	1	3772	3772		0	0	1				8910	6099	5962	6005	12128	12128					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3285217285156	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.592	1	28.592	28.092	29.092	0								0	0	0	0.34212	1	3884	3884		0	0	1				8911	6099	5962	6005	12129	12129					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32818603515625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.056	1	29.056	28.556	29.556	0								0	0	0	0.34212	1	4019	4019		0	0	1				8912	6099	5962	6005	12130	12130					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3285827636719	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.19	1	29.19	28.69	29.69	0								0	0	0	0.34212	1	4057	4057		0	0	1				8913	6099	5962	6005	12131	12131					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3284912109375	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.543	1	29.543	29.043	30.043	0								0	0	0	0.34212	1	4162	4162		0	0	1				8914	6099	5962	6005	12132	12132					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32867431640625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.959	1	30.959	30.459	31.459	0								0	0	0	0.34212	1	4581	4581		0	0	1				8915	6099	5962	6005	12133	12133					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3284606933594	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.193	1	31.193	30.693	31.693	0								0	0	0	0.34212	1	4651	4651		0	0	1				8916	6099	5962	6005	12134	12134					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32861328125	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.773	1	87.773	87.273	88.273	0								0	0	0	0.34185	1	21832	21832		0.094841	0.094841	1				8917	6099	5962	6005	12135	12135					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3287048339844	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.641	1	97.641	97.141	98.141	0								0	0	0	0.34212	1	24828	24828		0	0	1				8918	6099	5962	6005	12136	12136					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3288269042969	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.89	1	98.89	98.39	99.39	0								0	0	0	0.34212	1	25209	25209		0	0	1				8919	6099	5962	6005	12137	12137					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32861328125	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.722	1	23.822	23.322	24.322	0.099739								0	0	0	0.34212	1	2369	2369		0	0	1				8920	6099	5962	6005	12138	12138					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3284606933594	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.039	1	24.139	23.639	24.639	0.099739								0	0	0	0.34212	1	2451	2451		0	0	1				8921	6099	5962	6005	12139	12139					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32830810546875	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.194	1	24.294	23.794	24.794	0.099739								0	0	0	0.34212	1	2493	2493		0	0	1				8922	6099	5962	6005	12140	12140					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32891845703125	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.562	1	24.658	24.158	25.158	0.096073								0	0	0	0.34212	1	2594	2594		0	0	1				8923	6099	5962	6005	12141	12141					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.328857421875	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.694	1	24.79	24.29	25.29	0.096073								0	0	0	0.34212	1	2634	2634		0	0	1				8924	6099	5962	6005	12142	12142					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32867431640625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.832	1	24.928	24.428	25.428	0.096073								0	0	0	0.34212	1	2673	2673		0	0	1				8925	6099	5962	6005	12143	12143					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3282775878906	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.956	1	25.052	24.552	25.552	0.096073								0	0	0	0.34212	1	2709	2709		0	0	1				8926	6099	5962	6005	12144	12144					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3285827636719	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.076	1	25.172	24.672	25.672	0.096073								0	0	0	0.34212	1	2741	2741		0	0	1				8927	6099	5962	6005	12145	12145					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3285827636719	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.205	1	25.301	24.801	25.801	0.096073								0	0	0	0.34212	1	2779	2779		0	0	1				8928	6099	5962	6005	12146	12146					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3278503417969	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.333	1	25.429	24.929	25.929	0.096073								0	0	0	0.34212	1	2815	2815		0	0	1				8929	6099	5962	6005	12147	12147					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32818603515625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.468	1	25.564	25.064	26.064	0.096073								0	0	0	0.34212	1	2854	2854		0	0	1				8930	6099	5962	6005	12148	12148					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3282775878906	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.029	1	29.107	28.607	29.607	0.078287								0	0	0	0.34212	1	3887	3887		0	0	1				8931	6099	5962	6005	12149	12149					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3287048339844	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.232	1	29.311	28.811	29.811	0.078287								0	0	0	0.34212	1	3947	3947		0	0	1				8932	6099	5962	6005	12150	12150					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32879638671875	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.463	1	29.541	29.041	30.041	0.078287								0	0	0	0.34212	1	4016	4016		0	0	1				8933	6099	5962	6005	12151	12151					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32818603515625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.599	1	29.677	29.177	30.177	0.078287								0	0	0	0.34212	1	4057	4057		0	0	1				8934	6099	5962	6005	12152	12152					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3286437988281	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.375	1	30.451	29.951	30.951	0.075403								0	0	0	0.34212	1	4286	4286		0	0	1				8935	6099	5962	6005	12153	12153					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3283386230469	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.127	1	31.201	30.701	31.701	0.073782								0	0	0	0.34212	1	4509	4509		0	0	1				8936	6099	5962	6005	12154	12154					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32867431640625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.451	1	31.525	31.025	32.025	0.073782								0	0	0	0.34212	1	4606	4606		0	0	1				8937	6099	5962	6005	12155	12155					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3288879394531	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.037	1	32.11	31.61	32.61	0.07378								0	0	0	0.34212	1	4780	4780		0	0	1				8938	6099	5962	6005	12156	12156					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3288269042969	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.246	1	32.32	31.82	32.82	0.07378								0	0	0	0.34212	1	4843	4843		0	0	1				8939	6099	5962	6005	12157	12157					0.279389961581046
KKKKKKLVF	9	Unmodified	_KKKKKKLVF_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.91064453125	2	573.907894	1145.80123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.39	1	109.41	108.91	109.91	0.019402								0	0	0	0.29525	1	27972	27972		0	0	1		+		8940	12271	5963	6006	12158	12158					0.2341660373817831
KKKKKKRKM	9	Unmodified	_KKKKKKRKM_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.9168090820312	2	601.915727	1201.8169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.22	1	115.23	114.73	115.73	0.013092								0	0	0	0.2927	1	29299	29299		0.52476	0.52476	1				8941	1007	5964	6007	12159	12159					0.22406566983545417
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.3154602050781	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.916	1	55.916	55.416	56.416	0								0	0	0	0.34018	1	12116	12116		0	0	1		+		8942	10727	5965	6008	12160	12160					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.315185546875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.973	1	70.973	70.473	71.473	0								0	0	0	0.34018	1	16702	16702		0	0	1		+		8943	10727	5965	6008	12161	12161					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.31585693359375	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.123	1	47.206	46.706	47.706	0.083096								0	0	0	0.34018	1	9312	9312		0	0	1		+		8944	10727	5965	6008	12162	12162					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.46	1	53.526	53.026	54.026	0.06543								0	0	0	0.34018	1	11230	11230		0	0	1		+		8945	10727	5965	6008	12163	12163					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.907	1	53.972	53.472	54.472	0.065128								0	0	0	0.34005	1	11367	11367		0.15932	0	1		+		8946	10727	5965	6008	12164	12164					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.429	1	55.494	54.994	55.994	0.065128								0	0	0	0.34018	1	11831	11831		0	0	1		+		8947	10727	5965	6008	12165	12165					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.3152770996094	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.344	1	57.413	56.913	57.913	0.068375								0	0	0	0.34018	1	12415	12415		0	0	1		+		8948	10727	5965	6008	12166	12166					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.31512451171875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.604	1	59.676	59.176	60.176	0.072338								0	0	0	0.34018	1	13101	13101		0	0	1		+		8949	10727	5965	6008	12167	12167					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.3155517578125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.626	1	74.675	74.175	75.175	0.048546								0	0	0	0.34018	1	17663	17663		0	0	1		+		8950	10727	5965	6008	12168	12168					0.3054822610070005
KKKKKVQLT	9	Unmodified	_KKKKKVQLT_					0	0	0		ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8794555664062	2	550.879333	1099.74411	0.038711	2.1325E-05	0.1888	0.00010401	0.22751	0.00012533	550.8792598693951	111.96	1.095	111.96	111.82	112.92	0					253	122	3	0	0	0	0.34704	1	28766	28766		0.52476	0.52476	1	5636700			8951	7010	5966	6009	12169	12169					0.19823136461786817
KKKKTKKKG	9	Unmodified	_KKKKTKKKG_					0	0	0		ENST00000360264.7_1_7:101898640-101898772:+|nuORF	ENST00000360264.7_1_7:101898640-101898772:+|nuORF	ENST00000360264.7_1_7:101898640-101898772:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.37939453125	2	537.3795	1072.74445	0.48548	0.00026089	0.18259	9.8121E-05	0.66807	0.00035901	537.3794539873859	112.03	1.0116	112.04	111.86	112.87	0.014595					281	117	3	0	0	0	0.35102	1	28670	28670		0	0	1	7156300			8952	6149	5967	6010	12170	12170					0.21098556181664208
KKKKVWREEKE	11	Unmodified	_KKKKVWREEKE_					0	0	0		ENST00000483997.5_1_20:13976316-14032584:+|nuORF;ENST00000492055.5_1_20:13976316-14032491:+|nuORF;ENST00000494602.5_1_20:13976409-14547255:+|nuORF;ENST00000477147.5_1_20:13976316-14474162:+|nuORF;nc|ENSG00000172264|A1Z1Q3|MACROD2;ENSG00000172264|ENST00000684519|MACROD2	ENST00000483997.5_1_20:13976316-14032584:+|nuORF	ENST00000483997.5_1_20:13976316-14032584:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.29345703125	3	496.627942	1486.862	0.50785	0.00025221	-1.0541	-0.00052348	-0.54622	-0.00027127	496.6274492495775	96.467	0.32016	96.467	96.38	96.701	0					20	13	2	0	0	0	0.31101	1	24453	24453		0.40827	0.26837	1	99036			8953	4489	5968	6011	12171	12171					0.13804044259791226
KKKLIGKH	8	Unmodified	_KKKLIGKH_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.32659912109375	2	476.326737	950.63892	-0.0039696	-1.8908E-06	0.41103	0.00019578	0.40706	0.00019389	476.3267520639898	112.22	1.6309	112.23	111.98	113.62	0.014595					338	205	4	0	0	0	0.54097	1	28949	28949		0.69038	0	1	4447800	+		8954	9450	5969	6012	12172	12172					0.1616264005605217
KKKMKLCGL	9	Unmodified	_KKKMKLCGL_					0	0	0			REV__ENST00000259400.10_2_9:102677486-102677543:+|nuORF	REV__ENST00000259400.10_2_9:102677486-102677543:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7462158203125	2	524.822115	1047.62968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.8	1	21.8	21.3	22.3	0								0	0	0	0.29525	1	1952	1952		0	0	1		+		8955	11227	5970	6013	12173	12173					0.1077678738386112
KKKQKKKK	8	Unmodified	_KKKQKKKK_					0	0	0		ENSG00000136448|ENST00000258960|NMT1;ZCRB1|p.E135Q|1|0.14|ENSG00000139168|chr12:42313917-42313917|C/G|missense_variant;ENST00000590114.5_1_17:43138721-43173651:+|nuORF	ENSG00000136448|ENST00000258960|NMT1	ENSG00000136448|ENST00000258960|NMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.3734130859375	2	522.374218	1042.73388	0.20554	0.00010737	0.23611	0.00012334	0.44165	0.00023071	522.374169295495	112.74	0.49474	112.75	112.67	113.16	0.013817					78	60	2	0	0	0	0.54097	1	28762	28762		0.69038	0	1	375240			8956	2792	5971	6014	12174	12174					0.2142257352722936
KKKQNKTL	8	Unmodified	_KKKQNKTL_					0	0	0		ENST00000424850.1_1_20:56174916-56175210:-|nuORF	ENST00000424850.1_1_20:56174916-56175210:-|nuORF	ENST00000424850.1_1_20:56174916-56175210:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8184814453125	2	494.319109	986.623664	0.53757	0.00026573	0.5104	0.0002523	1.048	0.00051803	494.31936819807044	101.41	0.16137	101.45	101.42	101.58	0.042656					14	10	2	0	0	0	0.3576	1	25831	25831		4.756	4.756	1	91391			8957	6463	5972	6015	12175	12175					0.12981728468184883
KKKRALRRFLE	11	Unmodified	_KKKRALRRFLE_					0	0	0		nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENST00000484594.5_1_2:212426591-213403254:-|nuORF	nc|ENSG00000178568|Q15303-4|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.31103515625	3	482.312288	1443.91504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.566	1	56.633	56.133	57.133	0.066452								0	0	0	0.34083	1	12178	12178		0.45452	0.35968	1				8958	4747	5973	6016	12176	12176					0.21083466833101738
KKKSKIKTLL	10	Unmodified	_KKKSKIKTLL_					0	0	0		nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.K1180Ifs*4|1|0.12|ENSG00000156675|chr8:37870514-37870515|-/AA|frameshift_variant;ENSG00000156675|ENST00000330843|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.4728393554688	2	593.915916	1185.81728	0.22248	0.00013213	0.76825	0.00045627	0.99073	0.00058841	593.9161454179585	110.77	0.32475	110.78	110.57	110.9	0.015678					63	49	2	0	0	0	0.31857	1	28252	28252		0	0	1	622140			8959	3634	5974	6017	12177	12177					0.23180265184419113
KKLKITVIYV	10	Unmodified	_KKLKITVIYV_					0	0	0		tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.90234375	2	602.905017	1203.79548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.958	1	98.958	98.458	99.458	0								0	0	0	0.33979	1	25229	25229		0.45834	0.057624	1				8960	13653	5975	6018	12178	12178					0.2017346043580801
KKLKRKKQVA	10	Unmodified	_KKLKRKKQVA_					0	0	0		ENSG00000113387|ENST00000265073|SUB1	ENSG00000113387|ENST00000265073|SUB1	ENSG00000113387|ENST00000265073|SUB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.9240112304688	2	613.924606	1225.83466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.175	1	56.175	55.675	56.675	0								0	0	0	0.33984	1	12195	12195		0.40072	0.40072	1				8961	1799	5976	6019	12179	12179					0.23077605510070498
KKLLVYEAL	9	Unmodified	_KKLLVYEAL_					0	0	0		nc|ENSG00000176623|Q96DB5-3|RMDN1;nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1;ENST00000522804.5_1_8:87497076-87500839:-|nuORF	nc|ENSG00000176623|Q96DB5-3|RMDN1	nc|ENSG00000176623|Q96DB5-3|RMDN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.8270263671875	2	538.839342	1075.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.219	1	50.293	49.793	50.793	0.07312								0	0	0	0.27613	1	10247	10247		3.9444	0	1				8962	4669	5977	6020	12180	12180					0.12932650067932627
KKLPNIKMR	9	Unmodified	_KKLPNIKMR_					0	0	0		ENST00000503148.1_1_4:164438551-164440663:+|nuORF;ENSG00000198498|ENST00000358572|TMA16	ENST00000503148.1_1_4:164438551-164440663:+|nuORF	ENST00000503148.1_1_4:164438551-164440663:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3765258789062	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.75	1	114.77	114.27	115.27	0.013336								0	0	0	0.28631	1	29189	29189		1.8442	0	1				8963	5368	5978	6021	12181	12181					0.14258623412865745
KKLRKLLKRLQ	11	Unmodified	_KKLRKLLKRLQ_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.3368835449219	3	475.336434	1422.98747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.18	1	113.19	112.69	113.69	0.013817								0	0	0	0.34188	1	28884	28884		0.08335	0.08335	1				8964	5235	5979	6022	12182	12182					0.2928980090666755
KKMAQVLHVP	10	Unmodified	_KKMAQVLHVP_					0	0	0		ENST00000590400.1_1_19:11303345-11305238:-|nuORF	ENST00000590400.1_1_19:11303345-11305238:-|nuORF	ENST00000590400.1_1_19:11303345-11305238:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8428955078125	2	575.841894	1149.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.131	1	87.131	86.631	87.631	0								0	0	0	0.33215	1	21636	21636		9.3831	1.2276	1				8965	7262	5980	6023	12183	12183					0.10038630658914371
KKMAQVLHVP	10	Unmodified	_KKMAQVLHVP_					0	0	0		ENST00000590400.1_1_19:11303345-11305238:-|nuORF	ENST00000590400.1_1_19:11303345-11305238:-|nuORF	ENST00000590400.1_1_19:11303345-11305238:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8417358398438	2	575.841894	1149.66923	0.51788	0.00029822	0.097428	5.6103E-05	0.61531	0.00035432	575.8416443056561	84.489	1.7086	84.512	84.012	85.72	0.023132					156	88	3	0	0	0	0.42335	1	20751	20751		9.3831	4.1525	1	1635200			8966	7262	5980	6023	12184	12184					0.10038630658914371
KKMGQHCNLN	10	Unmodified	_KKMGQHCNLN_					0	0	0			REV__ENST00000582850.1_1_18:2945885-2946149:-|nuORF	REV__ENST00000582850.1_1_18:2945885-2946149:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.785400390625	2	586.786792	1171.55903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.249	1	98.249	97.749	98.749	0								0	0	0	0.33738	1	25013	25013		3.2813	0.28607	1		+		8967	12556	5981	6024	12185	12185					-0.019885376717638792
KKMHRINRK	9	Unmodified	_KKMHRINRK_					0	0	0		nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8704223632812	2	605.869308	1209.72406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.61	1	113.62	113.12	114.12	0.013817								0	0	0	0.2927	1	28966	28966		0.52476	0.066424	1				8968	3563	5982	6025	12186	12186					0.12759062250188435
KKMTEIQVELE	11	Unmodified	_KKMTEIQVELE_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.91204833984375	3	449.911127	1346.71155	0.19576	8.8075E-05	1.1831	0.00053227	1.3788	0.00062034	449.91175978103036	57.772	0.65267	57.84	57.606	58.259	0.068375					31	24	2	0	0	0	0.39319	1	12549	12549		5.8681	0	1	219280	+		8969	8914	5983	6026	12187	12187					0.05206516485986867
KKMTEIQVELE	11	Unmodified	_KKMTEIQVELE_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	449.911127	1346.71155	0.43759	0.00019687	1.718	0.00077296	2.1556	0.00096984	449.9117172263054	57.964	0.47716	57.964	57.74	58.217	0	0.061995	0.00057598	NaN	5.8681	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147910	+		8970	8914	5983	6026							0.05206516485986867
KKMTEIQVELE	11	Unmodified	_KKMTEIQVELE_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	449.911127	1346.71155	0.19576	8.8075E-05	1.1831	0.00053227	1.3788	0.00062034	449.91175978103036	57.772	0.65267	57.84	57.606	58.259	0.068375	-0.061995	-0.0001461	NaN	5.8681	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219280	+		8971	8914	5983	6026							0.05206516485986867
KKNALPDIF	9	Unmodified	_KKNALPDIF_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038330078125	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.309	1	80.333	79.833	80.833	0.023605								0	0	0	0.27427	1	19397	19397		4.3292	0	1		+		8972	8550	5984	6027	12188	12188					0.07626619856978323
KKNPIVETKPM	11	Unmodified	_KKNPIVETKPM_					0	0	0			REV__nc|ENSG00000137872|Q8NFY4-7|SEMA6D	REV__nc|ENSG00000137872|Q8NFY4-7|SEMA6D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.8698120117188	2	642.870848	1283.72714	0.2687	0.00017274	-1.9531	-0.0012556	-1.6844	-0.0010828	642.8692684638218	69.832	0.26279	69.892	69.751	70.013	0.060562					12	9	2	0	0	0	0.39906	1	16219	16219		4.5289	1.7937	1	97526	+		8973	9294	5985	6028	12189	12189					0.09662847793651963
KKNQHTKIH	9	Unmodified	_KKNQHTKIH_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3307495117188	2	567.330539	1132.64652	0.68324	0.00038762	0.3622	0.00020549	1.0454	0.00059311	567.3306714351886	84.433	1.6308	84.433	84.02	85.65	0					258	82	4	0	0	0	0.30005	1	20829	20829		6.7232	0.99131	1	2767200	+		8974	10676	5986	6029	12190	12190					0.08550747585650242
KKNQNIQK	8	Unmodified	_KKNQNIQK_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.79901123046875	2	500.79854	999.582528	0.30593	0.00015321	0.2832	0.00014183	0.58913	0.00029504	500.7985902578141	88.894	0.54242	88.894	88.701	89.244	0					54	21	3	0	0	0	0.53423	1	22154	22154		5.2307	0.47466	1	476130			8975	2320	5987	6030	12191	12191					0.08271967428697735
KKNQNIQK	8	Unmodified	_KKNQNIQK_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7984619140625	2	500.79854	999.582528	0.31614	0.00015832	0.20208	0.0001012	0.51822	0.00025952	500.7985392421515	88.915	0.57107	88.947	88.679	89.25	0.032265					55	22	3	0	0	0	0.52924	1	21972	21972		8.5933	0.68312	1	496230			8976	2320	5987	6030	12192	12192					0.08271967428697735
KKPHQHSGE	9	Unmodified	_KKPHQHSGE_					0	0	0		ENSG00000185982|ENST00000334391|DEFB128	ENSG00000185982|ENST00000334391|DEFB128	ENSG00000185982|ENST00000334391|DEFB128	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2102661132812	2	524.270147	1046.52574	0.016245	8.5167E-06	-0.75108	-0.00039377	-0.73484	-0.00038525	524.2697488505312	39.504	0.27378	39.593	39.455	39.728	0.088562					15	10	2	0	0	0	0.25644	1	7047	7047		3.9444	1.0552	1	35219			8977	5058	5988	6031	12193	12193					0.004339198721936555
KKPLFGEFCFR	11	Unmodified	_KKPLFGEFCFR_					0	0	0			REV__tr|U7SVK6|U7SVK6_FUSNURibosomalRNAsmallsubunitmethyltransferaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmIPE=3SV=1	REV__tr|U7SVK6|U7SVK6_FUSNURibosomalRNAsmallsubunitmethyltransferaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmIPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.7138977050781	3	457.912914	1370.71691	-0.22791	-0.00010436	-0.73515	-0.00033664	-0.96306	-0.000441	458.2469324747219	27.809	0.23525	27.891	27.783	28.018	0.082132					19	14	2	0	0	0	0.31101	1	3523	3523		0.32927	0.16995	1	19038	+		8978	13211	5989	6032	12194	12194					0.046382848590837966
KKPLFGEFCFR	11	Unmodified	_KKPLFGEFCFR_					0	0	0			REV__tr|U7SVK6|U7SVK6_FUSNURibosomalRNAsmallsubunitmethyltransferaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmIPE=3SV=1	REV__tr|U7SVK6|U7SVK6_FUSNURibosomalRNAsmallsubunitmethyltransferaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmIPE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	457.912914	1370.71691	-0.036737	-1.6822E-05	-1.3197	-0.00060431	-1.3564	-0.00062113	457.9123194045965	27.94	0.20146	27.94	27.792	27.994	0	0.024426	-0.00035586	NaN	0.32927	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20882	+		8979	13211	5989	6032							0.046382848590837966
KKQGKHVF	8	Unmodified	_KKQGKHVF_					0	0	0			REV__ENST00000465344.1_1_9:131745812-131747350:+|nuORF	REV__ENST00000465344.1_1_9:131745812-131747350:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7799072265625	2	486.292894	970.571235	0.072906	3.5454E-05	-1.5615	-0.00075936	-1.4886	-0.00072391	486.2920640453201	52.316	0.36536	52.383	52.267	52.632	0.067169					25	14	2	0	0	0	0.3576	1	10849	10849		2.5775	0	1	49910	+		8980	11987	5990	6033	12195	12195					0.08477190125222478
KKQKQLKS	8	Unmodified	_KKQKQLKS_					0	0	0		ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92	ENST00000451384.6_2_2:98292117-98319261:+|nuORF	ENST00000451384.6_2_2:98292117-98319261:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.3194885253906	2	494.319109	986.623664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.03	1	103.07	102.57	103.57	0.040916								0	0	0	0.38822	1	26301	26301		4.756	0	1				8981	5612	5991	6034	12196	12196					0.12981728468196252
KKRKKLTLT	9	Unmodified	_KKRKKLTLT_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.384765625	2	558.384783	1114.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.61	1	115.62	115.12	116.12	0.013092								0	0	0	0.2927	1	29383	29383		0.52476	0	1				8982	1017	5992	6035	12197	12197					0.20222538836083004
KKRQCKVL	8	Unmodified	_KKRQCKVL_					0	0	0		ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.8154296875	2	501.815679	1001.6168	0.27777	0.00013939	-0.59416	-0.00029816	-0.31639	-0.00015877	501.8153584129185	102.01	0.56666	102.01	101.94	102.5	0					83	39	3	0	0	0	0.53423	1	26257	26257		5.2307	0	1	3225600			8983	5345	5993	6036	12198	12198					0.11606092315957994
KKRQKNYYK	9	Unmodified	_KKRQKNYYK_					0	0	0		ERI1|p.L106Q|1|0.19|ENSG00000104626|chr8:9011571-9011571|T/A|missense_variant	ERI1|p.L106Q|1|0.19|ENSG00000104626|chr8:9011571-9011571|T/A|missense_variant	ERI1|p.L106Q|1|0.19|ENSG00000104626|chr8:9011571-9011571|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.383056640625	2	628.367121	1254.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.789	1	90.825	90.325	91.325	0.035446								0	0	0	0.27427	1	22586	22586		4.3292	2.2695	1				8984	7331	5994	6037	12199	12199					0.10251876308257124
KKRRMVKR	8	Unmodified	_KKRRMVKR_					0	0	0			REV__ENST00000376769.6_1_6:30036436-30037012:+|nuORF	REV__ENST00000376769.6_1_6:30036436-30037012:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3956298828125	2	551.361119	1100.70769	0.41905	0.00023105	-0.2222	-0.00012251	0.19685	0.00010854	551.3609797425818	109.32	0.39521	109.34	109.25	109.65	0.019402					64	43	2	0	0	0	0.53858	1	28016	28016		2.3027	0.65011	1	1030800	+		8985	11645	5995	6038	12200	12200					0.1613598108408496
KKRRRKKKKVS	11	Unmodified	_KKRRRKKKKVS_					0	0	0			REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.3367614746094	3	481.335316	1440.98412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.25	1	116.25	115.75	116.75	0								0	0	0	0.34212	1	29609	29609		0	0	1		+		8986	8432	5996	6039	12201	12201					0.28126550852653054
KKRRRKKKKVS	11	Unmodified	_KKRRRKKKKVS_					0	0	0			REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.3372802734375	3	481.335316	1440.98412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.38	1	116.38	115.88	116.88	0								0	0	0	0.34212	1	29631	29631		0	0	1		+		8987	8432	5996	6039	12202	12202					0.28126550852653054
KKRRRKKKKVS	11	Unmodified	_KKRRRKKKKVS_					0	0	0			REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.3376159667969	3	481.335316	1440.98412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.52	1	116.52	116.02	117.02	0								0	0	0	0.34212	1	29652	29652		0	0	1		+		8988	8432	5996	6039	12203	12203					0.28126550852653054
KKRRRKKKKVS	11	Unmodified	_KKRRRKKKKVS_					0	0	0			REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.3369445800781	3	481.335316	1440.98412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.67	1	116.67	116.17	117.17	0								0	0	0	0.34212	1	29675	29675		0	0	1		+		8989	8432	5996	6039	12204	12204					0.28126550852653054
KKRSVHPFH	9	Unmodified	_KKRSVHPFH_					0	0	0		nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-5|SHPRH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3272094726562	2	568.327799	1134.64105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.294	1	36.294	35.794	36.794	0								0	0	0	0.29233	1	6176	6176		0.6015	0.076735	1				8990	7523	5997	6040	12205	12205					0.07911068793850973
KKRTKTWHK	9	Unmodified	_KKRTKTWHK_					0	0	0		nc|ENSG00000143379|Q15047-2|SETDB1;nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-2|SETDB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5435791015625	3	404.915646	1211.72511	0.54081	0.00021898	-1.7838	-0.0007223	-1.243	-0.00050332	404.9149303368634	38.196	0.3154	38.196	38.017	38.332	0					17	10	2	0	0	0	0.25964	1	6772	6772		1.0715	0.29493	1	34119			8991	3152	5998	6041	12206	12206					0.12771599890743346
KKRYLWFY	8	Unmodified	_KKRYLWFY_					0	0	0		PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant;nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3378295898438	2	602.337301	1202.66005	0.009439	5.6855E-06	1.1055	0.00066591	1.115	0.00067159	602.3381197986556	30.355	0.088781	30.355	30.315	30.404	0					5	4	2	0	0	0	0.54081	1	4406	4406		0.79363	0.19213	1	8429.3			8992	2949	5999	6042	12207	12207					0.06682605364881056
KKSAATSLE	9	Unmodified	_KKSAATSLE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.76336669921875	2	467.763832	933.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.943	1	84.967	84.467	85.467	0.023125								0	0	0	0.28631	1	20808	20808		1.8442	1.0506	1				8993	3593	6000	6043	12208	12208					0.043694636892951166
KKSQKREA	8	Unmodified	_KKSQKREA_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L;ENST00000554744.1_1_14:81964730-81972475:-|nuORF;nc|ENSG00000071537|Q9UBV2-2|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7906799316406	2	487.790715	973.566878	0.2243	0.00010941	0.13584	6.6264E-05	0.36015	0.00017568	487.7906907049716	78.727	3.2748	78.727	77.685	80.959	0					178	113	3	0	0	0	0.53926	1	19057	19057		1.8442	0	1	978190			8994	770	6001	6044	12209	12209					0.07903680911658739
KKSRKKKYKK	10	Unmodified	_KKSRKKKYKK_					0	0	0			REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF	REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.29742431640625	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.639	1	40.728	40.228	41.228	0.089645								0	0	0	0.34008	1	7358	7358		0.12286	0.028024	1		+		8995	8440	6002	6045	12210	12210					0.22417277055819795
KKSTMLTFLF	10	Unmodified	_KKSTMLTFLF_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.89837646484375	3	405.898382	1214.67332	0.39281	0.00015944	-0.1941	-7.8785E-05	0.19871	8.0656E-05	405.89831271721096	36.077	2.8533	36.077	35.449	38.302	0					257	106	4	0	0	0	0.44496	1	6180	6180		3.0723	0.44103	1	170080	+		8996	8408	6003	6046	12211	12211					0.07456675361959242
KKSTMLTFLF	10	Unmodified	_KKSTMLTFLF_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.898193359375	3	405.898382	1214.67332	-0.013673	-5.5498E-06	0.1551	6.2953E-05	0.14142	5.7403E-05	405.89840186679515	35.817	1.3074	35.896	35.407	36.714	0.078827					140	50	4	0	0	0	0.42335	1	6047	6047		5.4027	1.5264	1	229250	+		8997	8408	6003	6046	12212	12212					0.07456675361959242
KKTKTALL	8	Unmodified	_KKTKTALL_					0	0	0		ENST00000504859.5_1_5:125807941-125819298:+|nuORF;nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B	ENST00000504859.5_1_5:125807941-125819298:+|nuORF	ENST00000504859.5_1_5:125807941-125819298:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.8046875	2	451.805303	901.596052	0.070229	3.173E-05	-0.71926	-0.00032497	-0.64903	-0.00029324	451.80490823163	112.4	0.95267	112.4	112.14	113.09	0					287	108	4	0	0	0	0.5411	1	28900	28900		0.6015	0	1	5530800			8998	3582	6004	6047	12213	12213					0.14131825207925885
KKTKTALL	8	Unmodified	_KKTKTALL_					0	0	0		ENST00000504859.5_1_5:125807941-125819298:+|nuORF;nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B	ENST00000504859.5_1_5:125807941-125819298:+|nuORF	ENST00000504859.5_1_5:125807941-125819298:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.8048400878906	2	451.805303	901.596052	0.17361	7.844E-05	-0.64306	-0.00029054	-0.46944	-0.0002121	451.8048348750026	112.4	0.65504	112.42	112.21	112.87	0.014595					211	72	3	0	0	0	0.5411	1	28784	28784		0.6015	0	1	4242900			8999	3582	6004	6047	12214	12214					0.14131825207925885
KKVFKILL	8	Unmodified	_KKVFKILL_					0	0	0		ENST00000227758.6_3_11:102248859-102248973:+|nuORF	ENST00000227758.6_3_11:102248859-102248973:+|nuORF	ENST00000227758.6_3_11:102248859-102248973:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.8512878417969	2	494.849513	987.684474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.02	1	115.03	114.53	115.53	0.013092								0	0	0	0.38822	1	29247	29247		0.69038	0	1				9000	5806	6005	6048	12215	12215					0.1901386551843416
KKVFVLIM	8	Unmodified	_KKVFVLIM_					0	0	0			REV__tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	REV__tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.31439208984375	2	489.314449	976.614345	0.10963	5.3643E-05	-0.13929	-6.8156E-05	-0.02966	-1.4513E-05	489.31434378689283	90.034	0.51487	90.034	89.716	90.231	0					38	21	2	0	0	0	0.54081	1	22568	22568		0.79363	0.79363	1	766540	+		9001	13171	6006	6049	12216	12216					0.12510243858309877
KKVKKGKKK	9	Unmodified	_KKVKKGKKK_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.3898315429688	2	536.389868	1070.76518	0.5135	0.00027544	0.057407	3.0793E-05	0.57091	0.00030623	536.3899379721018	110.77	0.3431	110.79	110.62	110.97	0.015671					83	52	2	0	0	0	0.35102	1	28253	28253		0	0	1	733720	+		9002	10225	6007	6050	12217	12217					0.23263146561316717
KKVKKGKKK	9	Unmodified	_KKVKKGKKK_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.390869140625	2	536.389868	1070.76518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.65	1	111.67	111.17	112.17	0.015678								0	0	0	0.29525	1	28464	28464		0	0	1		+		9003	10225	6007	6050	12218	12218					0.23263146561316717
KKVYATSTW	9	Unmodified	_KKVYATSTW_					0	0	0		nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E;nc|ENSG00000164520|Q8TD07-5|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;RAET1E|p.N250Mfs*11|1|0.46|ENSG00000164520|chr6:149888541-149888541|T/-|frameshift_variant;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2944946289062	2	542.295299	1082.57605	-0.31897	-0.00017298	-0.788	-0.00042733	-1.107	-0.0006003	542.294713995414	41.647	0.39381	41.737	41.573	41.967	0.089767					26	15	2	0	0	0	0.32831	1	7662	7662		2.9952	0.93549	1	109540			9004	4013	6008	6051	12219	12219					0.03806029477323136
KKWDLFKKFFV	11	Unmodified	_KKWDLFKKFFV_					0	0	0		tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.95916748046875	3	495.958741	1484.85439	0.70329	0.0003488	-0.03739	-1.8544E-05	0.6659	0.00033026	495.9586116921887	98.06	2.0454	98.06	97.387	99.433	0					237	116	4	0	0	0	0.4167	2	25154	24805;25154		0.50596	0.051438	1	494510			9005	13452	6009	6052	12220;12221	12221					0.1313593673012292
KKWDLFKKFFV	11	Unmodified	_KKWDLFKKFFV_					0	0	0		tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.9591064453125	3	495.958741	1484.85439	0.65682	0.00032576	0.0016211	8.0398E-07	0.65845	0.00032656	495.95862592045125	98.041	2.09	98.083	97.227	99.317	0.041939					248	116	4	0	0	0	0.41713	1	24708	24708		0.40827	0.041592	1	514250			9006	13452	6009	6052	12222	12222					0.1313593673012292
KKWQTDNSY	9	Unmodified	_KKWQTDNSY_					0	0	0		ENST00000455810.5_1_10:6622785-6624154:+|nuORF	ENST00000455810.5_1_10:6622785-6624154:+|nuORF	ENST00000455810.5_1_10:6622785-6624154:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2830810546875	2	585.28292	1168.55129	0.49931	0.00029224	-0.44737	-0.00026184	0.051943	3.0401E-05	585.2827251241589	19.002	0.41788	19.092	18.86	19.278	0.089705					86	48	2	0	0	0	0.34704	1	1174	1174		0.52476	0	1	31220			9007	6586	6010	6053	12223	12223					-0.026246503960464906
KKYSDEFDF	9	Unmodified	_KKYSDEFDF_					0	0	0			REV__nc|ENSG00000143494|Q86V25-3|VASH2	REV__nc|ENSG00000143494|Q86V25-3|VASH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.772216796875	2	589.771854	1177.52915	0.47231	0.00027855	3.3062	0.0019499	3.7785	0.0022285	589.7734381609888	94.613	0.3707	94.613	94.466	94.837	0					30	14	3	0	0	0	0.2546	1	23888	23888		12.241	1.4167	1	99704	+		9008	9467	6011	6054	12224	12224					-0.05250874864486832
KLDLKNIN	8	Unmodified	_KLDLKNIN_					0	0	0		tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.74908447265625	2	479.290017	956.565481	-0.20188	-9.676E-05	-0.51673	-0.00024766	-0.71862	-0.00034443	479.2896419947416	46.308	0.25729	46.308	46.126	46.384	0					11	8	2	0	0	0	0.3576	1	9218	9218		7.9102	0	1	34140			9009	13705	6012	6055	12225	12225					0.08546046822880271
KLDTLVEF	8	Unmodified	_KLDTLVEF_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000467378.1_1_X:47106498-47106892:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.77099609375	2	482.771126	963.527698	0.11385	5.4966E-05	0.072202	3.4857E-05	0.18606	8.9823E-05	482.771059865088	62.424	0.73714	62.424	62.175	62.912	0					58	26	3	0	0	0	0.52924	1	14173	14173		8.5933	0	1	632480			9010	1304	6013	6056	12226	12226					0.044475358374370444
KLEEIRSKS	9	Unmodified	_KLEEIRSKS_					0	0	0		ENST00000473964.5_1_1:2433496-2434522:+|nuORF;nc|ENSG00000149527|O75038-5|PLCH2;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2	ENST00000473964.5_1_1:2433496-2434522:+|nuORF	ENST00000473964.5_1_1:2433496-2434522:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3170166015625	2	545.316763	1088.61897	0.53519	0.00029185	0.25857	0.000141	0.79375	0.00043285	545.3167173682548	84.635	2.8459	84.658	83.84	86.686	0.023125					387	132	3	0	0	0	0.27929	1	21017	21017		9.3831	9.3831	1	7199100			9011	6097	6014	6057	12227	12227					0.07820799534783873
KLELHLFMLSG	11	Unmodified	_KLELHLFMLSG_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3604125976562	2	644.360116	1286.70568	0.076936	4.9575E-05	0.46806	0.0003016	0.54499	0.00035117	644.3602902403627	91.21	1.7297	91.245	90.555	92.285	0.035446					128	63	3	0	0	0	0.40578	1	22588	22588		2.9952	0	1	431490			9012	2808	6015	6058	12228	12228					0.07379462764970413
KLELLYKSFK	10	Unmodified	_KLELLYKSFK_					0	0	0		ENSG00000164609|ENST00000297151|SLU7;ENST00000523219.1_1_5:159833399-159834623:-|nuORF;ENST00000520841.1_1_5:159833399-159835410:-|nuORF	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3778076171875	2	634.884281	1267.75401	0.24464	0.00015532	-4.2922	-0.002725	-4.0475	-0.0025697	635.3842191378131	109.21	0.26878	109.23	109.03	109.3	0.019402					52	37	2	0	0	0	0.45627	1	27917	27917		3.5965	0	1	760210			9013	4020	6016	6059	12229	12229					0.1308427967649095
KLEPVVLLLL	10	Unmodified	_KLEPVVLLLL_					0	0	0			REV__ENST00000398985.1_1_17:25887428-25904874:+|nuORF	REV__ENST00000398985.1_1_17:25887428-25904874:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8886108398438	2	568.886293	1135.75803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.31	1	109.33	108.83	109.83	0.019402								0	0	0	0.33487	1	27949	27949		6.2058	2.9245	1		+		9014	11740	6017	6060	12230	12230					0.19558369170249534
KLEQVYYF	8	Unmodified	_KLEQVYYF_					0	0	0		ENST00000570511.5_1_16:3293693-3304184:-|nuORF;nc|ENSG00000103313|O15553-3|MEFV;nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV	ENST00000570511.5_1_16:3293693-3304184:-|nuORF	ENST00000570511.5_1_16:3293693-3304184:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.31689453125	2	545.2844	1088.55425	0.29523	0.00016099	1.868	0.0010186	2.1633	0.0011796	545.2850840371875	83.707	0.4739	83.729	83.589	84.063	0.021744					28	16	3	0	0	0	0.3576	1	20507	20507		7.9102	2.1497	1	87887			9015	1362	6018	6061	12231	12231					0.013512247287508217
KLERHSGI	8	Unmodified	_KLERHSGI_					0	0	0			REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2715759277344	2	470.272158	938.529764	-0.025232	-1.1866E-05	0.044872	2.1102E-05	0.019641	9.2365E-06	470.2720263132973	86.952	0.69166	86.952	86.683	87.374	0					71	29	3	0	0	0	0.50815	2	21586	21542;21586		11.64	0	1	1325400	+		9016	10600	6019	6062	12232;12233	12233					0.05804009365908769
KLERHSGI	8	Unmodified	_KLERHSGI_					0	0	0			REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2716979980469	2	470.272158	938.529764	-0.10101	-4.7502E-05	0.23864	0.00011222	0.13763	6.4722E-05	470.27209426349515	86.934	0.71979	86.962	86.706	87.426	0.027573					72	31	3	0	0	0	0.53118	1	21371	21371		7.2892	0	1	1434000	+		9017	10600	6019	6062	12234	12234					0.05804009365908769
KLERHSGI	8	Unmodified	_KLERHSGI_					0	0	0			REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	470.272158	938.529764	-0.025232	-1.1866E-05	0.044872	2.1102E-05	0.019641	9.2365E-06	470.2720263132973	86.952	0.69166	86.952	86.683	87.374	0	-0.0050524	-8.4073E-05	NaN	11.64	71	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1325400	+		9018	10600	6019	6062							0.05804009365908769
KLERQKKK	8	Unmodified	_KLERQKKK_					0	0	0		nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3477172851562	2	529.345658	1056.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.82	1	111.82	111.32	112.32	0								0	0	0	0.38822	1	28614	28614		4.756	0	1				9019	3321	6020	6063	12235	12235					0.15069106250848563
KLERREKQSN	10	Unmodified	_KLERREKQSN_					0	0	0			REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3598022460938	2	644.360025	1286.7055	0.31655	0.00020397	0.3835	0.00024711	0.70005	0.00045108	644.3600234725468	91.27	0.98215	91.27	90.602	91.584	0					77	35	3	0	0	0	0.45945	1	22774	22774		2.9952	0.26005	1	503460	+		9020	7923	6021	6064	12236	12236					0.0736117908934375
KLERTKAQ	8	Unmodified	_KLERTKAQ_					0	0	0			REV__ENST00000535325.5_1_3:45960268-45960403:-|nuORF	REV__ENST00000535325.5_1_3:45960268-45960403:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2930603027344	2	487.293091	972.571629	0.27284	0.00013295	0.075578	3.6829E-05	0.34842	0.00016978	487.2930151178203	85.616	0.89604	85.616	85.339	86.235	0					76	38	3	0	0	0	0.53894	1	21130	21130		2.0598	2.0598	1	312640	+		9021	12381	6022	6065	12237	12237					0.08424565054417599
KLESIRTH	8	Unmodified	_KLESIRTH_					0	0	0			REV__ENSG00000115461|ENST00000233813|IGFBP5	REV__ENSG00000115461|ENST00000233813|IGFBP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.285400390625	2	492.285266	982.555979	0.32157	0.0001583	0.16455	8.1004E-05	0.48612	0.00023931	492.28521283340655	88.901	0.80553	88.934	88.679	89.485	0.032265					67	31	3	0	0	0	0.53026	1	22022	22022		7.9102	0	1	753060	+		9022	8785	6023	6066	12238	12238					0.06400278537375925
KLETIYEEMF	10	Unmodified	_KLETIYEEMF_					0	0	0			REV__tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	REV__tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8824157714844	3	434.881057	1301.62134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.502	1	87.502	87.002	88.002	0								0	0	0	0.33952	1	21749	21749		0.77653	0.14971	1		+		9023	13101	6024	6067	12239	12239					-0.017405328424729305
KLEVAARSDPC	11	Unmodified	_KLEVAARSDPC_					0	0	0			REV__ENST00000491010.2_1_11:124501900-124502131:+|nuORF	REV__ENST00000491010.2_1_11:124501900-124502131:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.80615234375	2	594.805705	1187.59686	0.13687	8.141E-05	0.41031	0.00024406	0.54718	0.00032547	594.8060760490172	49.383	0.76301	49.383	49.143	49.906	0					45	26	3	0	0	0	0.31086	1	10148	10148		2.4985	0.65425	1	174770	+		9024	12147	6025	6068	12240	12240					0.010562517946709704
KLEVAARSDPC	11	Unmodified	_KLEVAARSDPC_					0	0	0			REV__ENST00000491010.2_1_11:124501900-124502131:+|nuORF	REV__ENST00000491010.2_1_11:124501900-124502131:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	594.805705	1187.59686	0.021116	1.256E-05	0.91923	0.00054677	0.94035	0.00055933	594.8062004887439	49.295	0.52136	49.372	49.076	49.597	0.076607	-0.0057257	0.00034796	NaN	2.4985	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186480	+		9025	12147	6025	6068							0.010562517946709704
KLFIGGLSF	9	Unmodified	_KLFIGGLSF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000122566|ENST00000618183|HNRNPA2B1;nc|ENSG00000135486|P09651-3|HNRNPA1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2921447753906	2	491.292028	980.569503	0.45394	0.00022302	-0.08699	-4.2738E-05	0.36695	0.00018028	491.29188030642496	74.754	0.74799	74.754	74.477	75.225	0					63	27	4	0	0	0	0.0034016	2	17846	17846;17898		107.19	61.166	1	1119100			9026	2187;147	6026	6069	12241;12242	12241					0.07844136316634831
KLFIGGLSF	9	Unmodified	_KLFIGGLSF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000122566|ENST00000618183|HNRNPA2B1;nc|ENSG00000135486|P09651-3|HNRNPA1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.29205322265625	2	491.292028	980.569503	0.37837	0.00018589	-0.12568	-6.1743E-05	0.2527	0.00012415	491.291847534571	74.722	0.96311	74.771	74.482	75.445	0.048546					74	34	4	0	0	0	0.0034016	2	17669	17669;17712		107.19	65.092	1	1288900			9027	2187;147	6026	6069	12243;12244	12243					0.07844136316634831
KLFVGGLSF	9	Unmodified	_KLFVGGLSF_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7155456542969	2	484.284203	966.553853	0.2564	0.00012417	-0.073115	-3.5408E-05	0.18328	8.876E-05	484.2840012952253	70.261	0.32416	70.261	70.067	70.391	0					19	12	2	0	0	0	0.22912	1	16507	16507		18.146	8.0724	1	130480			9028	1128	6027	6070	12245	12245					0.06923849799568416
KLGFYQKGRR	10	Unmodified	_KLGFYQKGRR_					0	0	0		ENST00000471115.5_1_1:85718343-85724278:-|nuORF	ENST00000471115.5_1_1:85718343-85724278:-|nuORF	ENST00000471115.5_1_1:85718343-85724278:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8671875	2	626.867289	1251.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.86	1	102.86	102.36	103.36	0								0	0	0	0.33892	1	26416	26416		1.4819	0.28856	1				9029	6668	6028	6071	12246	12246					0.10423296028102413
KLGHRRALF	9	Unmodified	_KLGHRRALF_					0	0	0		nc|ENSG00000080709|Q9H2S1|KCNN2;KCNN2|p.L479Wfs*14|1|0.26|ENSG00000080709|chr5:114493454-114493454|T/-|frameshift_variant;ENSG00000143603|ENST00000271915|KCNN3;ENSG00000080709|ENST00000673685|KCNN2	nc|ENSG00000080709|Q9H2S1|KCNN2	nc|ENSG00000080709|Q9H2S1|KCNN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2725219726562	2	549.338167	1096.66178	0.35948	0.00019747	-2.0463	-0.0011241	-1.6868	-0.00092664	549.3369211190761	95.692	0.16863	95.731	95.669	95.838	0.038872					7	5	2	0	0	0	0.25051	1	24078	24078		7.9102	0	1	90907			9030	894	6029	6072	12247	12247					0.11731659173483422
KLGSMPLPPYI	11	Unmodified	_KLGSMPLPPYI_					0	0	0		tr|U7SNJ7|U7SNJ7_FUSNUS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queAPE=3SV=1	tr|U7SNJ7|U7SNJ7_FUSNUS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queAPE=3SV=1	tr|U7SNJ7|U7SNJ7_FUSNUS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queAPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5436706542969	3	405.898382	1214.67332	0.16044	6.5123E-05	-0.2733	-0.00011093	-0.11286	-4.5808E-05	405.89834486573795	38.336	0.63539	38.423	38.047	38.682	0.08688					32	23	2	0	0	0	0.3108	1	6608	6608		1.2148	0.021489	1	22602			9031	13516	6030	6073	12248	12248					0.07456675361981979
KLHAMLSMI	9	Unmodified	_KLHAMLSMI_					0	0	0		ENST00000575367.1_1_17:2270608-2274710:+|nuORF;ENSG00000141258|ENST00000268989|SGSM2	ENST00000575367.1_1_17:2270608-2274710:+|nuORF	ENST00000575367.1_1_17:2270608-2274710:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2913208007812	2	522.290648	1042.56674	0.33248	0.00017365	0.83617	0.00043673	1.1687	0.00061038	522.2909635803669	81.784	0.65	81.805	81.542	82.192	0.021866					47	22	3	0	0	0	0.047633	1	19838	19838		43.858	43.858	1	726530			9032	3048	6031	6074	12249	12249					0.04716221595799652
KLKKTKKR	8	Unmodified	_KLKKTKKR_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3672485351562	2	515.366393	1028.71823	0.0086242	4.4446E-06	0.33113	0.00017065	0.33975	0.0001751	515.366472315518	112.15	1.022	112.15	111.91	112.93	0					324	112	4	0	0	0	0.53894	3	28659	28659;28696;28733		2.0598	0	1	9499400			9033	943	6032	6075	12250;12251;12252	12250					0.20502287010162945
KLKKTKKR	8	Unmodified	_KLKKTKKR_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.365966796875	2	515.366393	1028.71823	0.31658	0.00016315	0.029685	1.5299E-05	0.34627	0.00017845	515.3663213894835	112.16	0.90182	112.18	111.97	112.87	0.014595					297	103	4	0	0	0	0.54097	2	28553	28553;28589		0.69038	0	1	6953900			9034	943	6032	6075	12253;12254	12253					0.20502287010162945
KLKLVALHK	9	Unmodified	_KLKLVALHK_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3626098632812	2	525.363319	1048.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.71	1	116.71	116.21	117.21	0								0	0	0	0.29525	1	29682	29682		0	0	1				9035	4894	6033	6076	12255	12255					0.1896776877861157
KLLDRWTKLF	10	Unmodified	_KLLDRWTKLF_					0	0	0			REV__ENST00000508836.1_1_4:159590767-159593157:-|nuORF	REV__ENST00000508836.1_1_4:159590767-159593157:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.599365234375	3	440.599324	1318.77614	0.64982	0.00028631	-0.64874	-0.00028584	0.0010752	4.7373E-07	440.5990466083866	69.179	1.1318	69.179	68.958	70.09	0					92	39	3	0	0	0	0.44671	1	16362	16362		5.4027	5.4027	1	1396100	+		9036	10970	6034	6077	12256	12256					0.1295050414491925
KLLKIKKIIT	10	Unmodified	_KLLKIKKIIT_					0	0	0			REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.9147338867188	2	599.436484	1196.85842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.79	1	114.79	114.29	115.29	0								0	0	0	0.34018	1	29301	29301		0	0	1		+		9037	13166	6035	6078	12257	12257					0.2678602622388553
KLLKIKKIIT	10	Unmodified	_KLLKIKKIIT_					0	0	0			REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8133544921875	2	599.436484	1196.85842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.99	1	114.99	114.49	115.49	0								0	0	0	0.34018	1	29344	29344		0	0	1		+		9038	13166	6035	6078	12258	12258					0.2678602622388553
KLLPFLKKKV	10	Unmodified	_KLLPFLKKKV_					0	0	0		nc|ENSG00000105792|A5D8W1-4|CFAP69	nc|ENSG00000105792|A5D8W1-4|CFAP69	nc|ENSG00000105792|A5D8W1-4|CFAP69	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.1677551269531	3	405.284677	1212.8322	0.19842	8.0417E-05	2.9346	0.0011894	3.1331	0.0012698	405.6205898067183	106.4	0.078056	106.4	106.38	106.45	0					9	7	2	0	0	0	0.31856	1	27432	27432		0.15932	0	1	59596			9039	7477	6036	6079	12259	12259					0.23429757052394962
KLLVKGVLTF	10	Unmodified	_KLLVKGVLTF_					0	0	0			REV__nc|ENSG00000185019|O94941-2|UBOX5	REV__nc|ENSG00000185019|O94941-2|UBOX5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.317138671875	2	559.37081	1116.72707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.689	1	99.731	99.231	100.23	0.042839								0	0	0	0.33711	1	25295	25295		3.5965	0.70727	1		+		9040	10654	6037	6080	12260	12260					0.1733721585596868
KLLWKKYPLP	10	Unmodified	_KLLWKKYPLP_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENST00000496575.1_1_22:31289665-31289989:+|nuORF;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.40625	2	643.405184	1284.79581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.33	1	101.33	100.83	101.83	0								0	0	0	0.33877	1	25952	25952		1.6526	0.32309	1				9041	4993	6038	6081	12261	12261					0.16480880155700106
KLNENDKL	8	Unmodified	_KLNENDKL_					0	0	0			REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2698669433594	2	487.269281	972.52401	-0.26184	-0.00012759	0.17101	8.3329E-05	-0.090832	-4.426E-05	487.26931290650407	26.596	0.34457	26.683	26.502	26.846	0.0867					61	25	3	0	0	0	0.53202	1	3159	3159		6.7232	0	1	59998	+		9042	13196	6039	6082	12262	12262					0.03664866063570571
KLNKHVKMLH	10	Unmodified	_KLNKHVKMLH_					0	0	0		ENSG00000113088|ENST00000231009|GZMK	ENSG00000113088|ENST00000231009|GZMK	ENSG00000113088|ENST00000231009|GZMK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3753662109375	2	624.373892	1246.73323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.67	1	104.67	104.17	105.17	0								0	0	0	0.33979	1	26941	26941		0.45834	0	1				9043	1785	6040	6083	12263	12263					0.11973410815858188
KLNNMSVNDI	10	Unmodified	_KLNNMSVNDI_					0	0	0		tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2910766601562	2	574.29243	1146.57031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.594	1	45.594	45.094	46.094	0								0	0	0	0.33805	1	8982	8982		2.4985	0.19575	1				9044	13689	6041	6084	12264	12264					0.0028856290334715595
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7994384765625	2	474.799489	947.584425	0.48874	0.00023205	0.1093	5.1893E-05	0.59804	0.00028395	474.79924285064646	81.788	0.71382	81.788	81.515	82.229	0					63	24	4	0	0	0	0.14683	2	19986	19986;20045		46.921	0	1	366220			9045	2860	6042	6085	12265;12266	12265					0.10853628184611352
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7995300292969	2	474.799489	947.584425	0.25389	0.00012055	0.081365	3.8632E-05	0.33525	0.00015918	474.79936613187346	83.407	1.1356	83.407	83.079	84.215	0					123	38	4	0	0	0	0.018027	6	20495	20451;20495;20541;20583;20635;20698		86.121	0	1	2042400			9046	2860	6042	6085	12267;12268;12269;12270;12271;12272	12268					0.10853628184611352
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7992248535156	2	474.799489	947.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.254	1	84.254	83.754	84.754	0								0	0	0	0.38182	1	20758	20758		24.674	0	1				9047	2860	6042	6085	12273	12273					0.10853628184611352
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.79913330078125	2	474.799489	947.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.877	1	84.877	84.377	85.377	0								0	0	0	0.38182	1	20947	20947		24.674	0	1				9048	2860	6042	6085	12274	12274					0.10853628184611352
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7994384765625	2	474.799489	947.584425	0.12026	5.71E-05	0.095668	4.5423E-05	0.21593	0.00010252	474.79938172915803	81.754	0.70406	81.775	81.542	82.246	0.021866					46	24	3	0	0	0	0.14683	2	19824	19824;19874		46.921	0	1	367310			9049	2860	6042	6085	12275;12276	12275					0.10853628184611352
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.79949951171875	2	474.799489	947.584425	-0.0029059	-1.3797E-06	0.25491	0.00012103	0.252	0.00011965	474.7995126567355	83.403	1.1983	83.425	83.068	84.266	0.021744					108	42	3	0	0	0	0.018027	5	20292	20292;20339;20386;20439;20511		86.121	0	1	2602400			9050	2860	6042	6085	12277;12278;12279;12280;12281	12277					0.10853628184611352
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7995910644531	2	474.799489	947.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.249	1	84.271	83.771	84.771	0.021744								0	0	0	0.385	1	20596	20596		19.439	0	1				9051	2860	6042	6085	12282	12282					0.10853628184611352
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.334228515625	2	548.333696	1094.65284	0.29863	0.00016375	0.68751	0.00037698	0.98613	0.00054073	548.3339336437276	95.36	0.80759	95.36	95.118	95.925	0					95	36	3	0	0	0	0.0065046	3	24174	24174;24212;24263		77.984	0	1	2395900			9052	2860	6043	6086	12283;12284;12285	12283					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3338012695312	2	548.333696	1094.65284	0.38529	0.00021127	0.24345	0.00013349	0.62875	0.00034476	548.3338207153726	94.832	0.52715	94.832	94.59	95.118	0					42	20	3	0	0	0	0.054458	1	23965	23965		57.471	0	1	279070			9053	2860	6043	6086	12286	12286					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.787841796875	2	548.333696	1094.65284	0.62491	0.00034266	-0.3119	-0.00017103	0.31301	0.00017163	548.3339109034528	97.606	0.22304	97.606	97.461	97.684	0					11	9	2	0	0	0	0.25504	1	24814	24814		4.756	0	1	40714			9054	2860	6043	6086	12287	12287					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7820434570312	2	548.333696	1094.65284	0.34763	0.00019062	0.24081	0.00013205	0.58845	0.00032266	548.3337736813683	95.988	0.1565	95.988	95.872	96.028	0					19	10	3	0	0	0	0.13538	1	24331	24331		36.044	0	1	117760			9055	2860	6043	6086	12288	12288					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7702026367188	2	548.333696	1094.65284	0.3788	0.00020771	0.20884	0.00011451	0.58764	0.00032222	548.3337003492308	96.127	0.30293	96.127	96.015	96.318	0					23	13	3	0	0	0	0.21603	1	24385	24385		20.454	0	1	135700			9056	2860	6043	6086	12289	12289					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3336791992188	2	548.333696	1094.65284	0.34567	0.00018954	0.38639	0.00021187	0.73205	0.00040141	548.3339003161133	94.747	0.50311	94.785	94.564	95.067	0.038094					49	20	3	0	0	0	0.021119	1	23778	23778		57.471	0	1	247230			9057	2860	6043	6086	12290	12290					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.333740234375	2	548.333696	1094.65284	0.2902	0.00015912	0.5608	0.00030751	0.851	0.00046663	548.3339036203535	95.352	0.86617	95.391	95.115	95.981	0.038872					95	39	4	0	0	0	0.004541	4	23961	23961;24006;24049;24102		89.427	0	1	3008800			9058	2860	6043	6086	12291;12292;12293;12294	12291					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.755859375	2	548.333696	1094.65284	0.53023	0.00029075	0.62807	0.00034439	1.1583	0.00063514	548.3339587572315	96.785	0.23496	96.825	96.704	96.939	0.039772					13	11	2	0	0	0	0.25979	1	24401	24401		11.64	0	1	50652			9059	2860	6043	6086	12295	12295					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3334350585938	2	548.333696	1094.65284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.927	1	95.967	95.467	96.467	0.039772								0	0	0	0.090962	1	24150	24150		36.044	0	1				9060	2860	6043	6086	12296	12296					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.334716796875	2	548.333696	1094.65284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.599	1	96.639	96.139	97.139	0.039772								0	0	0	0.23452	1	24356	24356		12.532	0	1				9061	2860	6043	6086	12297	12297					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7701416015625	2	548.333696	1094.65284	0.41296	0.00022644	-0.20716	-0.00011359	0.2058	0.00011285	548.3335140708681	96.146	0.23128	96.186	96.005	96.236	0.039772					14	11	2	0	0	0	0.1217	1	24220	24220		38.151	0	1	78237			9062	2860	6043	6086	12298	12298					0.1092987276445001
KLPVKPGKRRL	11	Unmodified	_KLPVKPGKRRL_					0	0	0			REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF	REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.4373779296875	2	646.437881	1290.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.78	1	114.78	114.28	115.28	0								0	0	0	0.34125	1	29299	29299		0.30703	0.30703	1		+		9063	12382	6044	6087	12299	12299					0.22741294401407686
KLPVKPGKRRL	11	Unmodified	_KLPVKPGKRRL_					0	0	0			REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF	REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.437255859375	2	646.437881	1290.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.92	114.42	115.42	0								0	0	0	0.34125	1	29329	29329		0.30703	0.30703	1		+		9064	12382	6044	6087	12300	12300					0.22741294401407686
KLQASTFTT	9	Unmodified	_KLQASTFTT_					0	0	0			REV__ENSG00000165462|ENST00000298231|PHOX2A	REV__ENSG00000165462|ENST00000298231|PHOX2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.771240234375	2	498.771657	995.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.35	1	103.35	102.85	103.85	0								0	0	0	0.28631	1	26564	26564		1.8442	0	1		+		9065	8635	6045	6088	12301	12301					0.030817502063200664
KLQASTFTT	9	Unmodified	_KLQASTFTT_					0	0	0			REV__ENSG00000165462|ENST00000298231|PHOX2A	REV__ENSG00000165462|ENST00000298231|PHOX2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.77105712890625	2	498.771657	995.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.37	1	103.41	102.91	103.91	0.03791								0	0	0	0.27427	1	26401	26401		4.3292	1.44	1		+		9066	8635	6045	6088	12302	12302					0.030817502063200664
KLQHMKLHG	9	Unmodified	_KLQHMKLHG_					0	0	0		tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1	tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1	tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.81103515625	2	546.310761	1090.60697	-0.11889	-6.4953E-05	-2.1247	-0.0011607	-2.2436	-0.0012257	546.8110357665481	28.12	0.46414	28.12	27.831	28.295	0					56	23	4	0	0	0	0.32112	1	3730	3730		3.9444	0	1	33947			9067	13729	6046	6089	12303	12303					0.06528904310562211
KLQHYQNIAF	10	Unmodified	_KLQHYQNIAF_					0	0	0			REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.22900390625	3	421.227779	1260.66151	0.88579	0.00037312	2.3897	0.0010066	3.2755	0.0013797	421.2285988465467	65.901	0.74199	65.901	65.645	66.387	0					59	25	3	0	0	0	0.45443	1	15304	15304		1.9064	0.57673	1	373150	+		9068	9700	6047	6090	12304	12304					0.04160194662972572
KLSDSECVYLI	11	Unmodified	_KLSDSECVYLI_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.322265625	2	635.323396	1268.63224	0.47224	0.00030003	-0.38612	-0.00024531	0.086122	5.4716E-05	635.3223345858478	93.145	0.15549	93.145	93.031	93.187	0					9	5	2	0	0	0	0.40055	1	23467	23467		4.1895	0.90819	1	37641	+		9069	11051	6048	6091	12305	12305					0.00866869531841985
KLSLQLPSLPR	11	Unmodified	_KLSLQLPSLPR_					0	0	0			REV__ENST00000482818.1_1_22:29724812-29725148:-|nuORF	REV__ENST00000482818.1_1_22:29724812-29725148:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3928833007812	2	626.392805	1250.77106	0.28245	0.00017693	0.419	0.00026246	0.70145	0.00043938	626.3925948103592	107.77	0.075806	107.8	107.74	107.81	0.022224					20	11	3	0	0	0	0.40796	1	27601	27601		2.4985	0.84587	1	15071000	+		9070	12107	6049	6092	12306	12306					0.15570200282309088
KLSLQLPSLPR	11	Unmodified	_KLSLQLPSLPR_					0	0	0			REV__ENST00000482818.1_1_22:29724812-29725148:-|nuORF	REV__ENST00000482818.1_1_22:29724812-29725148:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	626.392805	1250.77106	0.28245	0.00017693	0.419	0.00026246	0.70145	0.00043938	626.3925948103592	107.77	0.075806	107.8	107.74	107.81	0.022224	-0.012927	-0.0017918	NaN	2.4985	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15071000	+		9071	12107	6049	6092							0.15570200282309088
KLTVYTTLIDV	11	Unmodified	_KLTVYTTLIDV_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8711547851562	2	633.371204	1264.72785	0.10305	6.527E-05	-1.8892	-0.0011966	-1.7862	-0.0011313	633.8709299537043	90.12	0.56164	90.12	89.933	90.495	0					45	22	3	0	0	0	0.39158	1	22619	22619		7.609	1.4032	1	1597100			9072	1427	6050	6093	12307	12307					0.10607965714370948
KLVALAIAL	9	Unmodified	_KLVALAIAL_					0	0	0			REV__ENST00000480169.1_1_1:40204667-40204940:+|nuORF	REV__ENST00000480169.1_1_1:40204667-40204940:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.21929931640625	2	456.318046	910.621539	0.25293	0.00011542	-3.2575	-0.0014865	-3.0046	-0.001371	456.31646510444585	104.71	0.045013	104.74	104.7	104.75	0.034004					6	4	2	0	0	0	0.26021	1	26773	26773		0	0	1	19126	+		9073	12079	6051	6094	12308	12308					0.16265299730332572
KLVLFRNRKLM	11	Unmodified	_KLVLFRNRKLM_					0	0	0		ENST00000370673.7_2_1:84791369-84815338:+|nuORF	ENST00000370673.7_2_1:84791369-84815338:+|nuORF	ENST00000370673.7_2_1:84791369-84815338:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2992248535156	3	473.298991	1416.87514	-0.18108	-8.5703E-05	0.771	0.00036491	0.58992	0.00027921	473.29919705731174	105.34	0.4422	105.34	105.14	105.58	0					86	46	3	0	0	0	0.41856	1	27141	27141		0.08335	0.08335	1	91628			9074	6205	6052	6095	12309	12309					0.18338203838152367
KLVRRVKDF	9	Unmodified	_KLVRRVKDF_					0	0	0			REV__SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	REV__SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3246459960938	2	580.866757	1159.71896	0.38749	0.00022508	-1.06	-0.00061569	-0.67246	-0.00039061	580.8661763411778	74.235	0.11594	74.235	74.171	74.287	0					5	3	2	0	0	0	0.25504	1	17691	17691		4.756	2.4533	1	94911	+		9075	9001	6053	6096	12310	12310					0.14549081659220064
KLVRRVKDF	9	Unmodified	_KLVRRVKDF_					0	0	0			REV__SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	REV__SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	580.866757	1159.71896	0.62	0.00036014	-1.1841	-0.0006878	-0.56409	-0.00032766	580.8661253160099	74.162	0.1086	74.211	74.179	74.287	0.048546	-0.012003	-4.4515E-05	NaN	4.756	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118800	+		9076	9001	6053	6096							0.14549081659220064
KLWGRNVF	8	Unmodified	_KLWGRNVF_					0	0	0		ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.28106689453125	2	510.292894	1018.57123	0.55585	0.00028365	-1.7604	-0.00089832	-1.2046	-0.00061467	510.2918370442603	92.591	0.33569	92.591	92.431	92.767	0					19	12	2	0	0	0	0.53423	1	23312	23312		5.2307	0.47466	1	49389			9077	4605	6054	6097	12311	12311					0.06269190125226487
KLWHRQLL	8	Unmodified	_KLWHRQLL_					0	0	0			REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF	REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3333740234375	2	547.335093	1092.65563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.15	1	117.15	116.65	117.65	0								0	0	0	0.38822	1	29748	29748		0.69038	0.16561	1		+		9078	11306	6055	6098	12312	12312					0.11301140941986887
KLYIEWSL	8	Unmodified	_KLYIEWSL_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.28271484375	2	526.294768	1050.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.674	1	65.741	65.241	66.241	0.066872								0	0	0	0.38822	1	14945	14945		4.756	0	1		+		9079	9422	6056	6099	12313	12313					0.05171815108406008
KLYRDVMVE	9	Unmodified	_KLYRDVMVE_					0	0	0		nc|ENSG00000167380|Q9NYT6-2|ZNF226;ENSG00000167380|ENST00000337433|ZNF226;ENST00000591019.5_1_19:44732652-44732808:+|nuORF;ENST00000590759.1_1_19:44674233-44676429:+|nuORF;ZNF227|p.F171Sfs*16|1|0.08|ENSG00000131115|chr19:44234941-44234942|-/CTTA|frameshift_variant;ENSG00000131115|ENST00000313040|ZNF227	nc|ENSG00000167380|Q9NYT6-2|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.80908203125	2	576.807716	1151.60088	0.38091	0.00021971	1.1647	0.00067178	1.5456	0.0008915	576.8082606141741	75.94	0.10644	75.94	75.892	75.998	0					13	9	2	0	0	0	0.065576	1	18224	18224		39.95	0	1	949860			9080	4209	6057	6100	12314	12314					0.031143412884148347
KMAAPAPLA	9	Unmodified	_KMAAPAPLA_					0	0	0		ENST00000256854.9_1_18:55289114-55289363:-|nuORF	ENST00000256854.9_1_18:55289114-55289363:-|nuORF	ENST00000256854.9_1_18:55289114-55289363:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2513122558594	2	435.249306	868.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.642	1	75.686	75.186	76.186	0.044037								0	0	0	0.27427	1	17973	17973		4.3292	1.7518	1				9081	5851	6058	6101	12315	12315					0.04455647859288092
KMKKGSFSL	9	Unmodified	_KMKKGSFSL_					0	0	0			REV__ENST00000396408.7_1_19:53911016-53911145:+|nuORF	REV__ENST00000396408.7_1_19:53911016-53911145:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.3050537109375	2	513.294245	1024.57394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.656	1	66.721	66.221	67.221	0.065071								0	0	0	0.24978	1	15243	15243		9.3831	0	1		+		9082	11725	6059	6102	12316	12316					0.06263277467883199
KMLSYLRVD	9	Unmodified	_KMLSYLRVD_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8064575195312	2	562.810259	1123.60597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.572	1	24.572	24.072	25.072	0								0	0	0	0.28724	1	2724	2724		1.6526	0.85899	1		+		9083	8142	6060	6103	12317	12317					0.04910645150994242
KMMMMIMMKK	10	Unmodified	_KMMMMIMMKK_					0	0	0		ENST00000552056.5_1_12:76441358-76444342:-|nuORF	ENST00000552056.5_1_12:76441358-76444342:-|nuORF	ENST00000552056.5_1_12:76441358-76444342:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8822021484375	3	434.881418	1301.62243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.59	1	101.59	101.09	102.09	0								0	0	0	0.33959	1	26030	26030		0.69767	0.07084	1				9084	7102	6061	6104	12318	12318					-0.01632095866398231
KMPKFKMPSF	10	Oxidation (M)	_KMPKFKM(Oxidation (M))PSF_		KMPKFKM(1)PSF		KM(-44)PKFKM(44)PSF	0	0	1		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.55572509765625	3	419.55585	1255.64572	-0.19234	-8.0699E-05	-0.63065	-0.00026459	-0.823	-0.00034529	419.5557695773641	42.608	2.0657	42.608	41.324	43.39	0					200	72	4	0	0	0	0.083023	3	8075	8030;8075;8118		48.561	23.142	2	489870			9085	5032	6062	6105	12319;12320;12321	12320		291;292			0.02812448830059111
KMPKFKMPSF	10	Oxidation (M)	_KM(Oxidation (M))PKFKMPSF_		KM(0.999)PKFKM(0.001)PSF		KM(32)PKFKM(-32)PSF	0	0	1		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.55560302734375	3	419.55585	1255.64572	0.04594	1.9275E-05	-0.82853	-0.00034761	-0.78259	-0.00032834	419.55563818011785	44.024	1.4862	44.024	43.231	44.717	0					173	52	4	0	0	0	0.065172	1	8473	8473		53.47	37.731	2	418110			9086	5032	6062	6105	12322	12322		291;292			0.02812448830059111
KMPKFKMPSF	10	Oxidation (M)	_KM(Oxidation (M))PKFKMPSF_		KM(1)PKFKMPSF		KM(44)PKFKM(-44)PSF	0	0	1		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.5557556152344	3	419.55585	1255.64572	0.0091567	3.8417E-06	-0.46782	-0.00019628	-0.45867	-0.00019244	419.5556965432477	45.308	1.9844	45.308	44.531	46.516	0					217	70	4	0	0	0	0.012483	4	8880	8829;8880;8925;8968		74.306	62.079	2	791440			9087	5032	6062	6105	12323;12324;12325;12326	12324		291;292			0.02812448830059111
KMPKFKMPSF	10	Oxidation (M)	_KMPKFKM(Oxidation (M))PSF_		KMPKFKM(1)PSF		KM(-46)PKFKM(46)PSF	0	0	1		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5558166503906	3	419.55585	1255.64572	-0.4119	-0.00017281	-0.0087604	-3.6755E-06	-0.42066	-0.00017649	419.5559199456861	42.389	2.4303	42.479	40.837	43.268	0.089764					260	94	5	0	0	0	0.063977	3	7870	7870;7913;7961		53.798	28.031	2	535390			9088	5032	6062	6105	12327;12328;12329	12327		291;292			0.02812448830059111
KMPKFKMPSF	10	Oxidation (M)	_KM(Oxidation (M))PKFKMPSF_		KM(1)PKFKMPSF		KM(49)PKFKM(-49)PSF	0	0	1		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.55572509765625	3	419.55585	1255.64572	-0.12436	-5.2175E-05	-0.23804	-9.9871E-05	-0.3624	-0.00015205	419.55583914792436	45.068	2.1403	45.155	44.363	46.504	0.08754					264	80	5	0	0	0	0.0073827	6	8672	8625;8672;8716;8756;8798;8848		78.61	64.898	2	823230			9089	5032	6062	6105	12330;12331;12332;12333;12334;12335	12331		291;292			0.02812448830059111
KMPKFKMPSF	10	Unmodified	_KMPKFKMPSF_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	414.22412109375	3	414.224212	1239.65081	0.10462	4.3337E-05	-0.41352	-0.00017129	-0.30889	-0.00012795	414.2240825723781	50.45	1.9064	50.523	49.868	51.774	0.07312					174	70	4	0	0	0	0.0034669	2	10298	10298;10341		80.24	68.722	1	651960			9090	5032	6062	6106	12336;12337	12336					0.040567526926906794
KMPKFKMPSF	10	Unmodified	_KMPKFKMPSF_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	414.224212	1239.65081	0.37005	0.00015328	-0.68217	-0.00028257	-0.31213	-0.00012929	414.2239814226424	50.601	2.2777	50.601	49.996	52.274	0	0.039146	-0.00015243	NaN	72.276	196	79	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495500			9091	5032	6062	6106							0.040567526926906794
KMPRALELT	9	Unmodified	_KMPRALELT_					0	0	0		nc|ENSG00000185436|Q8IU57-2|IFNLR1	nc|ENSG00000185436|Q8IU57-2|IFNLR1	nc|ENSG00000185436|Q8IU57-2|IFNLR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.8341674804688	2	529.804977	1057.5954	0.62132	0.00032918	-3.0335	-0.0016071	-2.4121	-0.001278	529.8035436664526	70.982	0.26547	71.041	70.892	71.157	0.058578					12	9	2	0	0	0	0.24929	1	16555	16555		9.3831	1.473	1	89785			9092	7575	6063	6107	12338	12338					0.06890662496562072
KMRAEDGENY	10	Unmodified	_KMRAEDGENY_					0	0	0		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA;nc|ENSG00000171530|O75347-2|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2877197265625	2	606.769319	1211.52409	0.93684	0.00056844	0.25259	0.00015326	1.1894	0.0007217	606.7690605310688	67.949	0.48802	68.012	67.845	68.333	0.063507					26	17	2	0	0	0	0.39662	1	15707	15707		12.241	0.60036	1	360440			9093	6508	6064	6108	12339	12339					-0.07321501998717395
KMTLKELSL	9	Unmodified	_KMTLKELSL_					0	0	0			REV__ENST00000377630.9_1_20:18445902-18445998:-|nuORF	REV__ENST00000377630.9_1_20:18445902-18445998:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8167114257812	2	531.81501	1061.61547	0.77593	0.00041265	2.1272	0.0011313	2.9031	0.0015439	531.8163188837491	85.115	0.59512	85.138	84.895	85.49	0.023125					42	23	2	0	0	0	0.29576	1	20832	20832		7.2892	0	1	156480	+		9094	11651	6065	6109	12340	12340					0.0871241343654674
KMWLIKLVLF	10	Unmodified	_KMWLIKLVLF_					0	0	0			REV__ENST00000592165.1_1_19:33572115-33586722:+|nuORF	REV__ENST00000592165.1_1_19:33572115-33586722:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.9043579101562	2	645.903962	1289.79337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.739	1	41.829	41.329	42.329	0.089764								0	0	0	0.34018	1	7690	7690		0	0	1		+		9095	11162	6066	6110	12341	12341					0.16006708426357363
KMWVMGKLV	9	Unmodified	_KMWVMGKLV_					0	0	0		ENST00000378119.8_1_6:24719560-24720079:-|nuORF	ENST00000378119.8_1_6:24719560-24720079:-|nuORF	ENST00000378119.8_1_6:24719560-24720079:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3082885742188	2	546.308841	1090.60313	-0.064016	-3.4972E-05	-0.39809	-0.00021748	-0.4621	-0.00025245	546.3084751550967	30.477	1.0694	30.553	30.255	31.324	0.075403					179	61	4	0	0	0	0.32112	1	4464	4464		3.9444	0.3479	1	543760			9096	6263	6067	6111	12342	12342					0.06145098492493162
KMYILLQRW	9	Unmodified	_KMYILLQRW_					0	0	0			REV__ENST00000282356.8_1_5:110712633-110784871:+|nuORF	REV__ENST00000282356.8_1_5:110712633-110784871:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.8592529296875	2	625.857544	1249.70053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.502	1	53.568	53.068	54.068	0.06543								0	0	0	0.2927	1	11243	11243		0.52476	0.066424	1		+		9097	11300	6068	6112	12343	12343					0.0856720369301911
KNCEREPEP	9	Unmodified	_KNCEREPEP_					0	0	0			REV__ENST00000480023.1_1_9:132591268-132591846:-|nuORF	REV__ENST00000480023.1_1_9:132591268-132591846:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2536010742188	2	551.253305	1100.49206	-0.21993	-0.00012123	0.026955	1.4859E-05	-0.19297	-0.00010638	551.2533555989734	19.774	2.3455	19.774	19.297	21.642	0					498	252	3	0	0	0	0.34704	1	1712	1712		0.52476	0.52476	1	95994	+		9098	11964	6069	6113	12344	12344					-0.054168696818805984
KNCKPAPYHL	10	Unmodified	_KNCKPAPYHL_					0	0	0			REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF	REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8076782226562	2	585.808051	1169.60155	0.38654	0.00022644	-1.2012	-0.00070368	-0.81467	-0.00047724	585.8072870088595	35.966	0.93592	35.966	35.675	36.611	0					66	36	2	0	0	0	0.46656	1	6135	6135		1.6526	0.17072	1	60286	+		9099	7687	6070	6114	12345	12345					0.023531807280960493
KNDINVYAI	9	Unmodified	_KNDINVYAI_					0	0	0		tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1	tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1	tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2849731445312	2	525.284931	1048.55531	0.1564	8.2155E-05	-0.1098	-5.7679E-05	0.046596	2.4476E-05	525.2848279106461	50.149	0.57033	50.222	49.956	50.526	0.07312					49	19	3	0	0	0	0.1182	1	10261	10261		28.487	6.7402	1	547390			9100	13538	6071	6115	12346	12346					0.032974390976505674
KNDLITYL	8	Unmodified	_KNDLITYL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.74334716796875	2	490.276575	978.538597	-0.50593	-0.00024805	-0.28877	-0.00014158	-0.7947	-0.00038963	490.27628935769286	41.24	0.25101	41.24	41.103	41.354	0					11	8	2	0	0	0	0.3576	1	7684	7684		2.0598	0	1	18713			9101	1073	6072	6116	12347	12347					0.04846938211687757
KNDLITYL	8	Unmodified	_KNDLITYL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	490.276575	978.538597	-0.36305	-0.00017799	-0.80239	-0.00039339	-1.1654	-0.00057139	490.2761086985985	41.138	0.1793	41.227	41.153	41.332	0.089645	-0.0062188	-0.00045624	NaN	2.0598	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19736			9102	1073	6072	6116							0.04846938211687757
KNELDQGPR	9	Unmodified	_KNELDQGPR_					0	0	0			REV__ENST00000507994.1_1_4:100738070-100784201:+|nuORF	REV__ENST00000507994.1_1_4:100738070-100784201:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7755737304688	2	528.775262	1055.53597	-0.10958	-5.7943E-05	0.16217	8.5751E-05	0.052589	2.7808E-05	528.7755975201293	28.89	0.29218	28.968	28.86	29.152	0.078289					38	22	2	0	0	0	0.33704	1	3871	3871		1.8442	0.36234	1	16047	+		9103	12236	6073	6117	12348	12348					0.0104248280676984
KNELDQGPR	9	Unmodified	_KNELDQGPR_					0	0	0			REV__ENST00000507994.1_1_4:100738070-100784201:+|nuORF	REV__ENST00000507994.1_1_4:100738070-100784201:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	528.775262	1055.53597	-0.13873	-7.3356E-05	-0.207	-0.00010946	-0.34573	-0.00018281	528.7753231620777	28.967	0.28766	28.967	28.867	29.155	0	-0.00055232	-0.00019348	NaN	1.8442	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21234	+		9104	12236	6073	6117							0.0104248280676984
KNGNLKVH	8	Unmodified	_KNGNLKVH_					0	0	0		tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.25799560546875	2	455.266876	908.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.587	1	47.667	47.167	48.167	0.080029								0	0	0	0.38822	1	9451	9451		5.2307	0	1				9105	13611	6074	6118	12349	12349					0.06128026711462553
KNGTAGGMGTK	11	Unmodified	_KNGTAGGMGTK_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.798095703125	2	511.258391	1020.50223	0.31751	0.00016233	-3.2043	-0.0016382	-2.8868	-0.0014759	511.2562527473696	37.77	0.40973	37.854	37.684	38.094	0.084476					15	13	2	0	0	0	0.31072	1	6525	6525		4.1895	1.1943	1	20289	+		9106	9817	6075	6119	12350	12350					-0.007202619566328394
KNGTAGGMGTK	11	Unmodified	_KNGTAGGMGTK_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	511.258391	1020.50223	0.30487	0.00015587	-3.1939	-0.0016329	-2.889	-0.001477	511.2562163951543	37.857	0.28876	37.857	37.7	37.988	0	0.0016037	6.5515E-06	NaN	4.1895	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26132	+		9107	9817	6075	6119							-0.007202619566328394
KNIIILILI	9	Unmodified	_KNIIILILI_					0	0	0			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.8741455078125	2	526.875728	1051.7369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.83	1	101.83	101.33	102.33	0								0	0	0	0.29233	1	26101	26101		0.6015	0.6015	1		+		9108	10522	6076	6120	12351	12351					0.21310403861389204
KNIIKMMNP	9	Unmodified	_KNIIKMMNP_					0	0	0		tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8012084960938	2	544.80138	1087.58821	-0.31617	-0.00017225	-0.33645	-0.0001833	-0.65262	-0.00035555	544.801304713748	19.34	0.32133	19.34	19.178	19.5	0					65	35	3	0	0	0	0.33704	1	1322	1322		1.8442	1.8442	1	28446			9109	13641	6077	6121	12352	12352					0.04791606624507949
KNINEDKL	8	Unmodified	_KNINEDKL_					0	0	0		tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2693176269531	2	487.269281	972.52401	-0.33971	-0.00016553	-0.017862	-8.7036E-06	-0.35757	-0.00017423	487.2692015541592	26.72	0.31719	26.72	26.54	26.857	0					50	20	3	0	0	0	0.51415	1	3357	3357		10.824	0	1	56120			9110	13464	6078	6122	12353	12353					0.036648660635478336
KNIYKEPNKL	10	Unmodified	_KNIYKEPNKL_					0	0	0			REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.24383544921875	3	416.243317	1245.70812	0.12385	5.1553E-05	0.88459	0.00036821	1.0084	0.00041976	416.5780420855531	46.618	1.4153	46.701	46.65	48.065	0.083096					79	58	2	0	0	0	0.46426	1	9306	9306		2.086	0.17963	1	194940	+		9111	13229	6079	6123	12354	12354					0.09509634494270358
KNKLKRII	8	Unmodified	_KNKLKRII_					0	0	0			REV__tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	REV__tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.85302734375	2	506.853119	1011.69168	0.22803	0.00011558	-0.35413	-0.00017949	-0.1261	-6.3915E-05	506.85281935187265	112.12	0.95386	112.14	111.94	112.89	0.014595					287	110	4	0	0	0	0.53858	1	28700	28700		2.3027	0	1	5817000	+		9112	13264	6080	6124	12355	12355					0.18630598118829766
KNLDVTSRE	9	Unmodified	_KNLDVTSRE_					0	0	0		nc|ENSG00000175984|Q68D51-2|DENND2C;nc|ENSG00000175984|Q68D51-3|DENND2C;ENSG00000175984|ENST00000393274|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2832641601562	2	531.28292	1060.55129	0.13086	6.9525E-05	-0.052879	-2.8093E-05	0.077984	4.1431E-05	531.2828579465147	22.484	0.26163	22.586	22.453	22.714	0.10178					40	24	2	0	0	0	0.33704	1	2067	2067		1.8442	0.36234	1	19524			9113	4644	6081	6125	12356	12356					0.02343349603961542
KNLDVTSRE	9	Unmodified	_KNLDVTSRE_					0	0	0		nc|ENSG00000175984|Q68D51-2|DENND2C;nc|ENSG00000175984|Q68D51-3|DENND2C;ENSG00000175984|ENST00000393274|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	531.28292	1060.55129	-0.23418	-0.00012442	0.12367	6.5705E-05	-0.11051	-5.8712E-05	531.2829958260519	22.67	0.32672	22.67	22.543	22.87	0	0.04209	8.5491E-05	NaN	1.8442	41	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17221			9114	4644	6081	6125							0.02343349603961542
KNLDVTSRE	9	Unmodified	_KNLDVTSRE_					0	0	0		nc|ENSG00000175984|Q68D51-2|DENND2C;nc|ENSG00000175984|Q68D51-3|DENND2C;ENSG00000175984|ENST00000393274|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	531.28292	1060.55129	0.13086	6.9525E-05	-0.052879	-2.8093E-05	0.077984	4.1431E-05	531.2828579465147	22.484	0.26163	22.586	22.453	22.714	0.10178	-0.04209	-0.00010211	NaN	1.8442	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19524			9115	4644	6081	6125							0.02343349603961542
KNRFQAVL	8	Unmodified	_KNRFQAVL_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.790771484375	2	488.290351	974.566149	0.53211	0.00025982	3.5787	0.0017474	4.1108	0.0020072	488.29223876059456	79.81	0.54689	79.81	79.562	80.109	0					32	18	2	0	0	0	0.3528	1	19357	19357		18.135	7.0205	1	254860			9116	4755	6082	6126	12357	12357					0.0778488626260696
KNRFQAVL	8	Unmodified	_KNRFQAVL_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2981262207031	2	488.290351	974.566149	0.29687	0.00014496	3.6165	0.0017659	3.9134	0.0019109	488.29210615488836	79.76	0.8104	79.787	79.599	80.41	0.026436					42	28	2	0	0	0	0.46036	1	19187	19187		18.135	7.9516	1	247040			9117	4755	6082	6126	12358	12358					0.0778488626260696
KNRNVIYEQL	10	Unmodified	_KNRNVIYEQL_					0	0	0			REV__ENST00000537303.5_1_19:15472501-15484105:-|nuORF	REV__ENST00000537303.5_1_19:15472501-15484105:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.23834228515625	3	426.238455	1275.69353	0.054648	2.3293E-05	-0.2125	-9.0576E-05	-0.15785	-6.7283E-05	426.2384930335248	31.687	1.4608	31.687	31.469	32.93	0					191	63	5	0	0	0	0.44859	1	4907	4907		5.0475	0.64137	1	1334300	+		9118	8526	6083	6127	12359	12359					0.06671562346150495
KNTAYFYSRF	10	Unmodified	_KNTAYFYSRF_					0	0	0		ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.8851318359375	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.35	1	103.35	102.85	103.85	0								0	0	0	0.33965	1	26563	26563		0.62683	0.21856	1				9119	934	6084	6128	12360	12360					-0.006117980909721155
KNTAYFYSRF	10	Unmodified	_KNTAYFYSRF_					0	0	0		ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.88525390625	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.88	1	102.92	102.42	103.42	0.040916								0	0	0	0.33965	1	26257	26257		0.62683	0.12087	1				9120	934	6084	6128	12361	12361					-0.006117980909721155
KNTEYMKLIF	10	Unmodified	_KNTEYMKLIF_					0	0	0			REV__ENST00000603552.1_1_9:20881907-20885147:+|nuORF	REV__ENST00000603552.1_1_9:20881907-20885147:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.842529296875	2	643.844299	1285.67404	0.2319	0.00014931	-2.3891	-0.0015382	-2.1572	-0.0013889	643.8424332932457	82.074	0.68445	82.096	81.905	82.59	0.021866					47	24	3	0	0	0	0.33001	1	19943	19943		19.362	3.2128	1	206990	+		9121	10765	6085	6129	12362	12362					0.04263470011028403
KNTEYMKLIF	10	Unmodified	_KNTEYMKLIF_					0	0	0			REV__ENST00000603552.1_1_9:20881907-20885147:+|nuORF	REV__ENST00000603552.1_1_9:20881907-20885147:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	643.844299	1285.67404	0.2319	0.00014931	-2.3891	-0.0015382	-2.1572	-0.0013889	643.8424332932457	82.074	0.68445	82.096	81.905	82.59	0.021866	-0.015446	0.00038721	NaN	19.362	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206990	+		9122	10765	6085	6129							0.04263470011028403
KNTSELLFK	9	Unmodified	_KNTSELLFK_					0	0	0		ENST00000442255.5_1_3:16313687-16345066:+|nuORF;ENSG00000154814|ENST00000285083|OXNAD1	ENST00000442255.5_1_3:16313687-16345066:+|nuORF	ENST00000442255.5_1_3:16313687-16345066:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.30810546875	2	540.308406	1078.60226	-0.27007	-0.00014592	0.10595	5.7248E-05	-0.16411	-8.8671E-05	540.3083236138152	20.227	0.49015	20.227	20.083	20.573	0					99	48	3	0	0	0	0.30757	1	1565	1565		5.7319	0	1	84689			9123	3567	6086	6130	12363	12363					0.0661029864882039
KNVRCCFVL	9	Unmodified	_KNVRCCFVL_					0	0	0			REV__ENST00000382911.8_2_18:51884960-51885041:+|nuORF	REV__ENST00000382911.8_2_18:51884960-51885041:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.787109375	2	541.285897	1080.55724	0.012497	6.7642E-06	-0.74461	-0.00040305	-0.73212	-0.00039628	541.285464871616	29.592	0.31486	29.67	29.57	29.885	0.078287					26	18	2	0	0	0	0.33704	1	4056	4056		1.8442	1.8442	1	17875	+		9124	11678	6087	6131	12364	12364					0.020184533102565183
KNVRCCFVL	9	Unmodified	_KNVRCCFVL_					0	0	0			REV__ENST00000382911.8_2_18:51884960-51885041:+|nuORF	REV__ENST00000382911.8_2_18:51884960-51885041:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	541.285897	1080.55724	-0.095365	-5.162E-05	-1.0223	-0.00055334	-1.1176	-0.00060496	541.2853882443941	29.656	0.28609	29.656	29.535	29.821	0	-0.0069176	-0.00020959	NaN	1.8442	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24591	+		9125	11678	6087	6131							0.020184533102565183
KNVRCCFVL	9	Unmodified	_KNVRCCFVL_					0	0	0			REV__ENST00000382911.8_2_18:51884960-51885041:+|nuORF	REV__ENST00000382911.8_2_18:51884960-51885041:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	541.285897	1080.55724	0.012497	6.7642E-06	-0.74461	-0.00040305	-0.73212	-0.00039628	541.285464871616	29.592	0.31486	29.67	29.57	29.885	0.078287	0.0069176	9.0999E-05	NaN	1.8442	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17875	+		9126	11678	6087	6131							0.020184533102565183
KNVSYKEDDD	10	Unmodified	_KNVSYKEDDD_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;CHD2|p.K471Nfs*7|1|0.1|ENSG00000173575|chr15:92948985-92949021|AAGAAACAACCTGCATATTTAGGAGGGGAGAATCTGG/-|frameshift_variant;nc|ENSG00000173575|O14647-3|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7711791992188	2	606.772582	1211.53061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.382	1	18.382	17.882	18.882	0								0	0	0	0.33988	1	1112	1112		0.35063	0.043601	1				9127	4550	6088	6132	12365	12365					-0.06669285566363214
KNWVTQLCHK	10	Unmodified	_KNWVTQLCHK_					0	0	0			REV__ENSG00000197746|ENST00000394936|PSAP	REV__ENSG00000197746|ENST00000394936|PSAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.830078125	2	628.832057	1255.64956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.009	1	45.097	44.597	45.597	0.08754								0	0	0	0.33959	1	8677	8677		0.40072	0.050084	1		+		9128	10870	6089	6133	12366	12366					0.031962546481281606
KNWWNYHV	8	Unmodified	_KNWWNYHV_					0	0	0			REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF	REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.77783203125	2	573.777608	1145.54066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.057	1	27.057	26.557	27.557	0								0	0	0	0.38822	1	3437	3437		0.69038	0.16561	1		+		9129	11855	6090	6134	12367	12367					-0.026285882598358512
KPAADADLQL	10	Unmodified	_KPAADADLQL_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2822265625	2	521.282389	1040.55022	-0.10104	-5.2669E-05	0.092171	4.8047E-05	-0.0088669	-4.6222E-06	521.2823628038655	43.598	0.53185	43.598	43.327	43.859	0					40	19	3	0	0	0	0.3186	1	8363	8363		20.581	2.2078	1	192180			9130	2546	6091	6135	12368	12368					0.03157135235028363
KPAADADLQL	10	Unmodified	_KPAADADLQL_					0	0	0		nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	nc|ENSG00000131778|Q86WJ1-5|CHD1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2702026367188	2	521.282389	1040.55022	-0.069641	-3.6303E-05	0.22576	0.00011769	0.15612	8.1383E-05	521.2824329309691	43.47	0.45729	43.559	43.361	43.818	0.088921					36	16	3	0	0	0	0.30917	1	8191	8191		21.59	3.4552	1	149810			9131	2546	6091	6135	12369	12369					0.03157135235028363
KPAENDVKL	9	Unmodified	_KPAENDVKL_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.28472900390625	2	507.284931	1012.55531	-0.25991	-0.00013185	0.093143	4.725E-05	-0.16677	-8.4598E-05	507.28491039641426	25.521	0.83124	25.521	25.271	26.102	0					157	64	3	0	0	0	0.056368	2	3005	2966;3005		41.956	7.5538	1	187470			9132	4002	6092	6136	12370;12371	12371					0.04953439097653245
KPAENDVKL	9	Unmodified	_KPAENDVKL_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2847595214844	2	507.284931	1012.55531	-0.097406	-4.9413E-05	-0.0051315	-2.6031E-06	-0.10254	-5.2016E-05	507.28486515751143	25.342	0.66742	25.438	25.226	25.894	0.096073					140	56	3	0	0	0	0.07372	3	2832	2795;2832;2870		38.176	7.539	1	186270			9133	4002	6092	6136	12372;12373;12374	12373					0.04953439097653245
KPAHMMLS	8	Unmodified	_KPAHMMLS_					0	0	0		ENST00000508624.5_1_5:112136994-112145823:+|nuORF	ENST00000508624.5_1_5:112136994-112145823:+|nuORF	ENST00000508624.5_1_5:112136994-112145823:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.2245178222656	2	457.732966	913.451379	-0.029966	-1.3716E-05	-1.1052	-0.00050588	-1.1351	-0.00051959	457.7325653524843	28.587	0.18729	28.587	28.512	28.699	0					9	6	2	0	0	0	0.3576	1	3863	3863		2.3027	0.65011	1	16429			9134	6899	6093	6137	12375	12375					-0.008808825352048189
KPAPLLSR	8	Unmodified	_KPAPLLSR_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2974853515625	2	441.281995	880.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.519	1	37.519	37.019	38.019	0								0	0	0	0.38822	1	6545	6545		2.0598	0	1		+		9135	9134	6094	6138	12376	12376					0.10438385376653514
KPATKEAEF	9	Unmodified	_KPATKEAEF_					0	0	0		ENSG00000169515|ENST00000307522|CCDC8	ENSG00000169515|ENST00000307522|CCDC8	ENSG00000169515|ENST00000307522|CCDC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.77142333984375	2	510.771657	1019.52876	-0.22074	-0.00011275	0.11801	6.0274E-05	-0.10273	-5.2472E-05	510.77160098516316	24.8	0.7401	24.8	24.571	25.311	0					105	56	3	0	0	0	0.32614	1	2824	2824		3.2813	1.2216	1	72049			9136	4342	6095	6139	12377	12377					0.01977750206322071
KPEDVYYFL	9	Unmodified	_KPEDVYYFL_					0	0	0		tr|U7T607|U7T607_FUSNUDUF4261domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00327PE=4SV=1	tr|U7T607|U7T607_FUSNUDUF4261domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00327PE=4SV=1	tr|U7T607|U7T607_FUSNUDUF4261domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00327PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7985229492188	2	587.294965	1172.57538	0.25005	0.00014685	2.4526	0.0014404	2.7027	0.0015873	587.7981656222523	58.373	0.28592	58.373	58.256	58.542	0					16	10	2	0	0	0	0.29105	1	12855	12855		7.9102	1.5561	1	196900			9137	13732	6096	6140	12378	12378					-0.004008099623888484
KPEEDSESSS	10	Unmodified	_KPEEDSESSS_					0	0	0		nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;ENST00000515035.5_1_5:149748314-149754605:+|nuORF	nc|ENSG00000070814|Q13428-4|TCOF1	nc|ENSG00000070814|Q13428-4|TCOF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7290649414062	2	547.72784	1093.44113	-0.095245	-5.2168E-05	1.0005	0.00054801	0.90526	0.00049584	547.7283014115898	29.062	0.41898	29.062	28.881	29.3	0					43	24	2	0	0	0	0.46746	1	4065	4065		1.4819	0.79152	1	44233			9138	765	6097	6141	12379	12379					-0.10185540245743141
KPEGKDYAL	9	Unmodified	_KPEGKDYAL_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7714538574219	2	510.771657	1019.52876	-0.22074	-0.00011275	0.11801	6.0274E-05	-0.10273	-5.2472E-05	510.77160098516316	24.8	0.7401	24.8	24.571	25.311	0					105	56	3	0	0	0	0.2359	1	2785	2785		14.405	4.3315	1	72049			9139	1292	6098	6142	12380	12380					0.01977750206322071
KPEGKDYAL	9	Unmodified	_KPEGKDYAL_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.77166748046875	2	510.771657	1019.52876	-0.035198	-1.7978E-05	0.0034104	1.7419E-06	-0.031788	-1.6236E-05	510.7715104313766	24.625	0.60544	24.721	24.499	25.105	0.096073					97	53	3	0	0	0	0.26104	1	2618	2618		11.495	2.7493	1	85813			9140	1292	6098	6142	12381	12381					0.01977750206322071
KPESNEQVL	9	Unmodified	_KPESNEQVL_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2716064453125	2	522.272021	1042.52949	-0.14648	-7.6504E-05	-0.32136	-0.00016784	-0.46785	-0.00024434	522.271806822283	28.227	0.98715	28.227	27.983	28.971	0					113	51	3	0	0	0	0.14444	2	3786	3743;3786		24.991	3.6593	1	422070			9141	4111	6099	6143	12382;12383	12383					0.009925448553985916
KPESNEQVL	9	Unmodified	_KPESNEQVL_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2716674804688	2	522.272021	1042.52949	-0.19121	-9.9866E-05	-0.29044	-0.00015169	-0.48165	-0.00025155	522.2718297516817	28.078	0.8994	28.161	27.952	28.852	0.082134					127	51	4	0	0	0	0.15482	2	3589	3589;3631		23.79	10.747	1	376320			9142	4111	6099	6143	12384;12385	12384					0.009925448553985916
KPFEAFLSF	9	Unmodified	_KPFEAFLSF_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2879638671875	2	543.286943	1084.55933	0.13587	7.3819E-05	0.63604	0.00034555	0.77191	0.00041937	543.2871828119928	71.992	0.31959	71.992	71.783	72.103	0					18	11	2	0	0	0	0.20358	1	17022	17022		18.146	0	1	157340			9143	1942	6100	6144	12386	12386					0.020435285913663392
KPFEAFLSF	9	Unmodified	_KPFEAFLSF_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2867431640625	2	543.286943	1084.55933	0.21769	0.00011827	0.18457	0.00010027	0.40226	0.00021854	543.2869445815559	71.833	0.27525	71.889	71.812	72.088	0.055939					14	9	2	0	0	0	0.11547	1	16823	16823		29.082	0	1	180630			9144	1942	6100	6144	12387	12387					0.020435285913663392
KPFQFGLLVM	10	Unmodified	_KPFQFGLLVM_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.33203125	2	590.33337	1178.65219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.82	1	106.82	106.32	107.32	0								0	0	0	0.33681	1	27554	27554		3.9444	0.3479	1		+		9145	10902	6101	6145	12388	12388					0.07000710053102921
KPGAIPVAVL	10	Unmodified	_KPGAIPVAVL_					0	0	0			REV__ENST00000272647.9_1_2:128621770-128621926:-|nuORF	REV__ENST00000272647.9_1_2:128621770-128621926:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.795654296875	2	482.813128	963.611703	0.012578	6.0729E-06	-0.97793	-0.00047216	-0.96535	-0.00046608	482.81267389406406	109.84	0.12702	109.86	109.82	109.95	0.017242					21	17	2	0	0	0	0.31794	1	28091	28091		3.5965	1.019	1	356090	+		9146	11276	6102	6146	12389	12389					0.1284411172498494
KPGIIGPVSP	10	Unmodified	_KPGIIGPVSP_					0	0	0			REV__ENST00000560342.5_1_14:24616937-24618114:+|nuORF	REV__ENST00000560342.5_1_14:24616937-24618114:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.795654296875	2	482.794935	963.575317	-0.31597	-0.00015255	1.2077	0.00058307	0.89172	0.00043052	482.79591803926684	109.89	0.79562	109.89	109.76	110.56	0					205	118	2	0	0	0	0.44246	1	28251	28251		6.2058	0.47393	1	2364000	+		9147	12478	6103	6147	12390	12390					0.09207234828284072
KPGKGARAE	9	Unmodified	_KPGKGARAE_					0	0	0		GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2646179199219	2	457.264333	912.514114	0.43652	0.0001996	-0.24791	-0.00011336	0.18861	8.6244E-05	457.2641145547303	76.292	2.7408	76.292	76.041	78.782	0					250	108	3	0	0	0	0.32614	9	18272	18272;18417;18462;18513;18755;18804;18891;18945;18988		3.2813	0	1	989850			9148	7345	6104	6148	12391;12392;12393;12394;12395;12396;12397;12398;12399	12391					0.054357228488470355
KPGKGARAE	9	Unmodified	_KPGKGARAE_					0	0	0		GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.26409912109375	2	457.264333	912.514114	0.30981	0.00014166	-0.038822	-1.7752E-05	0.27098	0.00012391	457.2641738472786	74.492	1.608	74.541	74.016	75.624	0.048546					111	58	3	0	0	0	0.32614	1	17631	17631		3.2813	0	1	216580			9149	7345	6104	6148	12400	12400					0.054357228488470355
KPGKGARAE	9	Unmodified	_KPGKGARAE_					0	0	0		GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2643737792969	2	457.264333	912.514114	0.29326	0.0001341	-0.11554	-5.2832E-05	0.17772	8.1263E-05	457.2641702864376	76.289	2.8255	76.328	76.001	78.827	0.03923					199	113	3	0	0	0	0.30397	12	18276	18088;18133;18178;18222;18276;18324;18373;18423;18465;18514;18572;18622		6.2058	0	1	1082900			9150	7345	6104	6148	12401;12402;12403;12404;12405;12406;12407;12408;12409;12410;12411;12412	12405					0.054357228488470355
KPGPCRSQAW	10	Unmodified	_KPGPCRSQAW_					0	0	0		OTOS|p.L76Pfs*56|1|0.22|ENSG00000178602|chr2:240139213-240139214|-/G|frameshift_variant	OTOS|p.L76Pfs*56|1|0.22|ENSG00000178602|chr2:240139213-240139214|-/G|frameshift_variant	OTOS|p.L76Pfs*56|1|0.22|ENSG00000178602|chr2:240139213-240139214|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7611083984375	2	565.2822	1128.54985	-0.31786	-0.00017968	2.4554	0.001388	2.1375	0.0012083	565.2832463066605	22.033	0.32533	22.033	21.852	22.178	0					53	30	2	0	0	0	0.31841	1	1997	1997		1.3295	0.5359	1	27542			9151	7659	6105	6149	12413	12413					-0.009285629658279504
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF	REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.92547607421875	3	427.925204	1280.75378	0.64634	0.00027658	0.39833	0.00017046	1.0447	0.00044704	427.92526471670726	96.987	0.67071	96.987	96.768	97.438	0					90	32	3	0	0	0	0.46746	1	24646	24646		0.62683	0	1	368650	+		9152	9034	6106	6150	12414	12414					0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF	REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3851928710938	2	641.384168	1280.75378	0.43078	0.00027629	0.81452	0.00052242	1.2453	0.00079871	641.3847123161737	97.03	0.73767	97.071	96.766	97.503	0.040855					79	36	3	0	0	0	0.46746	1	24526	24526		1.4819	0.15237	1	261220	+		9153	9034	6106	6150	12415	12415					0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF	REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	427.925204	1280.75378	0.64634	0.00027658	0.39833	0.00017046	1.0447	0.00044704	427.92526471670726	96.987	0.67071	96.987	96.768	97.438	0	-0.016093	-0.00025026	NaN	0.62683	90	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368650	+		9154	9034	6106	6150							0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF	REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	427.925204	1280.75378	0.3619	0.00015487	0.76236	0.00032623	1.1243	0.0004811	427.92543842209545	96.978	0.87933	97.019	96.803	97.682	0.040848	0.016093	0.00021707	NaN	0.62683	112	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338220	+		9155	9034	6106	6150							0.12463717519858619
KPGRQIKPPVH	11	Unmodified	_KPGRQIKPPVH_					0	0	0			REV__HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	REV__HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.3827514648438	2	628.882939	1255.75132	0.071418	4.4914E-05	0.33766	0.00021235	0.40908	0.00025726	629.383604797963	90.249	2.2269	90.249	88.956	91.183	0					125	86	2	0	0	0	0.3108	1	22538	22538		2.9952	0.26005	1	1398100	+		9156	9457	6107	6151	12416	12416					0.13367869062199134
KPGVFYQQVL	10	Unmodified	_KPGVFYQQVL_					0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.K1607Rfs*9|1|0.08|ENSG00000116127|chr2:73451341-73451341|A/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8301391601562	2	589.832049	1177.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.789	1	30.789	30.289	31.289	0								0	0	0	0.33984	1	4530	4530		0.40072	0	1				9157	23	6108	6152	12417	12417					0.06782577919807409
KPHLQRQR	8	Unmodified	_KPHLQRQR_					0	0	0			REV__ENSG00000185290|ENST00000329309|NUPR2	REV__ENSG00000185290|ENST00000329309|NUPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8169555664062	2	531.817599	1061.62064	0.54807	0.00029147	-1.069	-0.0005685	-0.5209	-0.00027703	531.8169209672808	81.584	0.71534	81.606	81.329	82.044	0.021866					47	25	2	0	0	0	0.53858	1	19875	19875		2.3027	0.24298	1	285320	+		9158	10665	6109	6153	12418	12418					0.09229898134026371
KPIKKVLHTV	10	Unmodified	_KPIKKVLHTV_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.8871459960938	2	581.887158	1161.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.17	1	109.19	108.69	109.69	0.019402								0	0	0	0.33892	1	27914	27914		1.4819	0	1		+		9159	8127	6110	6154	12419	12419					0.18535422978834504
KPINSDFRSVF	11	Unmodified	_KPINSDFRSVF_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2344970703125	3	437.234822	1308.68264	-0.059013	-2.5803E-05	-0.31904	-0.00013949	-0.37805	-0.0001653	437.23452090111164	45.137	1.1304	45.137	44.909	46.039	0					102	39	4	0	0	0	0.38987	1	8817	8817		6.6235	0.75532	1	480060			9160	3517	6111	6155	12420	12420					0.04064159971835579
KPITIKSS	8	Unmodified	_KPITIKSS_					0	0	0			REV__nc|ENSG00000144837|Q53H76-4|PLA1A	REV__nc|ENSG00000144837|Q53H76-4|PLA1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2627868652344	2	437.273835	872.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.85	1	110.85	110.35	111.35	0								0	0	0	0.38822	1	28425	28425		2.5775	0.27475	1		+		9161	9506	6112	6156	12421	12421					0.09175259419907889
KPLSLNHYLF	10	Unmodified	_KPLSLNHYLF_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.3453979492188	2	616.345323	1230.67609	-0.32906	-0.00020282	0.4444	0.0002739	0.11534	7.1089E-05	616.3454576804567	48.869	0.59653	48.869	48.656	49.253	0					53	20	3	0	0	0	0.46025	1	10062	10062		2.7352	1.2533	1	281720	+		9162	10018	6113	6157	12422	12422					0.06998266811115172
KPNACVSLK	9	Unmodified	_KPNACVSLK_					0	0	0			REV__nc|ENSG00000115009|P78556-2|CCL20	REV__nc|ENSG00000115009|P78556-2|CCL20	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2558288574219	2	480.27077	958.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.66	1	51.73	51.23	52.23	0.069874								0	0	0	0.26267	1	10683	10683		6.7232	0	1		+		9163	8772	6114	6158	12423	12423					0.04606417916727423
KPNVFSFGA	9	Unmodified	_KPNVFSFGA_					0	0	0			REV__ENSG00000163932|ENST00000330452|PRKCD	REV__ENSG00000163932|ENST00000330452|PRKCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7554016113281	2	483.75581	965.497067	0.18074	8.7436E-05	-0.11929	-5.7706E-05	0.061457	2.973E-05	483.7556650447173	68.691	0.60768	68.691	68.469	69.076	0					35	22	2	0	0	0	0.27929	1	16052	16052		9.3831	2.66	1	122150	+		9164	9964	6115	6159	12424	12424					0.012938022430489582
KPPAIIRIKLM	11	Unmodified	_KPPAIIRIKLM_					0	0	0			REV__ENSG00000196834|ENST00000451531|POTEI	REV__ENSG00000196834|ENST00000451531|POTEI	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.282958984375	2	640.417768	1278.82098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.076	1	72.076	71.576	72.576	0								0	0	0	0.34113	1	17039	17039		0.35063	0	1		+		9165	10835	6116	6160	12425	12425					0.19272611686596974
KPPEFGPSCLA	11	Unmodified	_KPPEFGPSCLA_					0	0	0		ENST00000497135.5_1_9:126173862-126345492:-|nuORF	ENST00000497135.5_1_9:126173862-126345492:-|nuORF	ENST00000497135.5_1_9:126173862-126345492:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.286865234375	2	573.286617	1144.55868	0.28811	0.00016517	-0.044	-2.5225E-05	0.24411	0.00013994	573.2864749080967	77.293	1.704	77.293	76.947	78.651	0					124	65	3	0	0	0	0.22821	1	18639	18639		26.268	0.86883	1	2341300			9166	6842	6117	6161	12426	12426					-0.007816341199713861
KPPQEDLKG	9	Unmodified	_KPPQEDLKG_					0	0	0		ENSG00000197037|ENST00000394152|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-3|ZSCAN25	ENSG00000197037|ENST00000394152|ZSCAN25	ENSG00000197037|ENST00000394152|ZSCAN25	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2335510253906	2	506.277106	1010.53966	0.29277	0.00014822	1.6696	0.0008453	1.9624	0.00099352	506.77678041682134	53.618	0.16878	53.618	53.49	53.659	0					6	5	2	0	0	0	0.2553	1	11420	11420		5.2969	1.3525	1	33645			9167	5265	6118	6162	12427	12427					0.034811525806162535
KPPRLQWF	8	Unmodified	_KPPRLQWF_					0	0	0		ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.8602294921875	2	536.308544	1070.60253	0.51946	0.00027859	-0.396	-0.00021238	0.12347	6.6215E-05	536.3079971564716	55.696	0.14115	55.696	55.608	55.749	0					6	4	2	0	0	0	0.3576	1	12045	12045		5.2307	0.90143	1	28557			9168	4549	6119	6163	12428	12428					0.07005763159304479
KPRKRRRTNS	10	Unmodified	_KPRKRRRTNS_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.6009826660156	3	433.600721	1297.78033	0.63715	0.00027627	0.029045	1.2594E-05	0.6662	0.00028886	433.6006676718276	97.009	0.6936	97.009	96.745	97.438	0					67	33	3	0	0	0	0.47446	1	24647	24647		0.15932	0	1	192540			9169	3700	6120	6164	12429	12429					0.14335406411237273
KPTATEPLF	9	Unmodified	_KPTATEPLF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2763366699219	2	502.276575	1002.5386	0.054391	2.7319E-05	0.52984	0.00026613	0.58423	0.00029344	502.2765876576486	45.961	0.53181	46.047	45.834	46.365	0.085617					37	19	3	0	0	0	0.2094	1	8973	8973		22.736	7.898	1	124080			9170	1322;6546	6121	6165	12430	12430					0.0374293821170113
KPTKAARQ	8	Unmodified	_KPTKAARQ_					0	0	0		ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.27484130859375	2	450.274701	898.534849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.99	1	111.99	111.49	112.49	0								0	0	0	0.38822	1	28664	28664		7.2892	2.0586	1				9171	4952	6122	6166	12431	12431					0.08152313228504227
KPTNPRNI	8	Unmodified	_KPTNPRNI_					0	0	0			REV__ENST00000436471.2_1_17:20384856-20385102:-|nuORF	REV__ENST00000436471.2_1_17:20384856-20385102:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.27215576171875	2	470.272158	938.529764	-0.10101	-4.7502E-05	0.23864	0.00011222	0.13763	6.4722E-05	470.27209426349515	86.934	0.71979	86.962	86.706	87.426	0.027573					72	31	3	0	0	0	0.53494	1	21464	21464		4.756	0	1	1434000	+		9172	8255	6123	6167	12432	12432					0.05804009365908769
KPTPATVASR	10	Unmodified	_KPTPATVASR_					0	0	0		ENST00000182527.3_1_6:52364724-52364970:-|nuORF	ENST00000182527.3_1_6:52364724-52364970:-|nuORF	ENST00000182527.3_1_6:52364724-52364970:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2986450195312	2	514.298373	1026.58219	0.081908	4.2125E-05	0.35356	0.00018183	0.43547	0.00022396	514.2985316277023	90.764	0.6437	90.8	90.581	91.225	0.035446					53	24	3	0	0	0	0.44938	1	22566	22566		4.897	4.897	1	418130			9173	5783	6124	6168	12433	12433					0.06996547708831713
KPTRECFVEI	10	Unmodified	_KPTRECFVEI_					0	0	0			REV__ENST00000487879.1_1_2:201750387-201752359:-|nuORF	REV__ENST00000487879.1_1_2:201750387-201752359:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3563232421875	2	611.318448	1220.62234	0.016198	9.9022E-06	0.6862	0.00041949	0.7024	0.00042939	611.3189584906394	90.695	0.11726	90.73	90.628	90.745	0.035446					5	4	2	0	0	0	0.31643	1	22540	22540		5.7319	0	1	50259	+		9174	11056	6125	6169	12434	12434					0.020857263171137674
KPTRSLKRPEA	11	Unmodified	_KPTRSLKRPEA_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8826904296875	2	641.883136	1281.75172	-0.022172	-1.4232E-05	-0.73385	-0.00047105	-0.75602	-0.00048528	641.882595686063	90.087	0.59709	90.121	89.906	90.503	0.034065					41	24	2	0	0	0	0.40796	1	22444	22444		2.4985	0.84587	1	744590	+		9175	10314	6126	6170	12435	12435					0.12211243991396259
KPTYRNSITV	10	Unmodified	_KPTYRNSITV_					0	0	0		ENSG00000185129|ENST00000331327|PURA	ENSG00000185129|ENST00000331327|PURA	ENSG00000185129|ENST00000331327|PURA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8305053710938	2	589.830037	1177.64552	-0.049273	-2.9063E-05	0.10072	5.9409E-05	0.051449	3.0346E-05	589.8301302550763	27.21	2.2695	27.21	27.006	29.275	0					301	142	5	0	0	0	0.46899	1	4033	4033		1.1933	1.1933	1	1644400			9176	5011	6127	6171	12436	12436					0.0638048842608896
KPVSVPLKP	9	Unmodified	_KPVSVPLKP_					0	0	0		nc|ENSG00000285791|Q8IWW8-4|ADHFE1;nc|ENSG00000285791|Q8IWW8-3|ADHFE1;nc|ENSG00000285791|Q8IWW8-2|ADHFE1;ENSG00000147576|ENST00000396623|ADHFE1	nc|ENSG00000285791|Q8IWW8-4|ADHFE1	nc|ENSG00000285791|Q8IWW8-4|ADHFE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.79620361328125	2	482.813128	963.611703	0.012673	6.1186E-06	-1.0521	-0.00050796	-1.0394	-0.00050184	482.81267921276043	109.98	0.12219	110	109.93	110.05	0.017235					24	18	2	0	0	0	0.32375	1	28120	28120		3.5965	1.019	1	410660			9177	3332	6128	6172	12437	12437					0.1284411172499631
KPYLCIHCGKN	11	Unmodified	_KPYLCIHCGKN_					0	0	0		nc|ENSG00000197062|Q16670-2|ZSCAN26;nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26	nc|ENSG00000197062|Q16670-2|ZSCAN26	nc|ENSG00000197062|Q16670-2|ZSCAN26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.3199462890625	2	638.320468	1274.62638	-0.45709	-0.00029177	-0.040743	-2.6007E-05	-0.49783	-0.00031778	638.3204312942265	40.86	1.0265	40.86	40.623	41.65	0					109	37	5	0	0	0	0.38315	1	7654	7654		8.1555	8.1555	1	1120700			9178	5268	6129	6173	12438	12438					5.4925391623328323E-05
KPYRPKNR	8	Unmodified	_KPYRPKNR_					0	0	0			REV__nc|ENSG00000188501|Q6UWM7-2|LCTL	REV__nc|ENSG00000188501|Q6UWM7-2|LCTL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.8011474609375	2	529.814525	1057.6145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.33	1	15.33	14.83	15.83	0								0	0	0	0.38822	1	526	526		2.3027	0	1		+		9179	10772	6130	6174	12439	12439					0.08799379902484361
KQAPRYPS	8	Unmodified	_KQAPRYPS_					0	0	0		nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.75872802734375	2	473.758884	945.503215	-0.41767	-0.00019787	0.515	0.00024398	0.097329	4.6111E-05	473.7586237724608	27.224	0.35909	27.224	27.085	27.445	0					48	21	4	0	0	0	0.53894	1	3473	3473		2.0598	0.21551	1	63461			9180	3307	6131	6175	12440	12440					0.02828320474566226
KQEKPILT	8	Unmodified	_KQEKPILT_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.79229736328125	2	478.792392	955.570232	-0.34712	-0.0001662	0.1302	6.2341E-05	-0.21692	-0.00010386	478.79231548601877	26.032	0.37991	26.124	25.94	26.32	0.091507					55	33	2	0	0	0	0.53894	1	3026	3026		2.0598	0	1	44532	+		9181	10379	6132	6176	12441	12441					0.09066930965661868
KQFEKRDPKT	10	Unmodified	_KQFEKRDPKT_					0	0	0			REV__ENSG00000132432|ENST00000352861|SEC61G	REV__ENSG00000132432|ENST00000352861|SEC61G	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.1814880371094	3	426.238455	1275.69353	-0.14801	-6.3086E-05	-0.22868	-9.7472E-05	-0.37668	-0.00016056	426.57260872773173	33.677	0.51731	33.751	33.327	33.845	0.074322					25	20	2	0	0	0	0.31854	1	5286	5286		0.56317	0.057215	1	16999	+		9182	9115	6133	6177	12442	12442					0.06671562346127757
KQFLKQKLT	9	Unmodified	_KQFLKQKLT_					0	0	0			REV__ENSG00000215018|ENST00000399429|COL28A1	REV__ENSG00000215018|ENST00000399429|COL28A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2796020507812	2	567.355691	1132.69683	0.37681	0.00021379	2.9142	0.0016534	3.291	0.0018672	567.3568038248694	62.881	0.24709	62.881	62.722	62.969	0					12	8	2	0	0	0	0.24791	1	14213	14213		10.074	1.3285	1	100930	+		9183	11014	6134	6178	12443	12443					0.13578857190805138
KQIKIQDIIV	10	Unmodified	_KQIKIQDIIV_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3822021484375	2	599.381906	1196.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.362	1	98.403	97.903	98.903	0.041931								0	0	0	0.33738	1	24895	24895		3.2813	1.2216	1				9184	4601	6135	6179	12444	12444					0.15875395533748815
KQIRLGILHK	10	Unmodified	_KQIRLGILHK_					0	0	0		ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.8236083984375	2	603.395682	1204.77681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.13	1	103.13	102.63	103.63	0								0	0	0	0.33984	1	26498	26498		0.40072	0	1				9185	4673	6136	6180	12445	12445					0.182613435846406
KQIRLGILHK	10	Unmodified	_KQIRLGILHK_					0	0	0		ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.8253784179688	2	603.395682	1204.77681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.15	1	103.15	102.65	103.65	0								0	0	0	0.33984	1	26502	26502		0.40072	0	1				9186	4673	6136	6180	12446	12446					0.182613435846406
KQKASAYYPSS	11	Unmodified	_KQKASAYYPSS_					0	0	0		ENSG00000183160|ENST00000392806|TMEM119	ENSG00000183160|ENST00000392806|TMEM119	ENSG00000183160|ENST00000392806|TMEM119	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.5437927246094	3	410.543544	1228.6088	-0.21584	-8.8612E-05	0.57059	0.00023425	0.35475	0.00014564	410.5437606168277	33.016	1.5264	33.09	32.44	33.966	0.074322					128	69	3	0	0	0	0.41448	1	5082	5082		1.0136	0.051299	1	61653			9187	4911	6137	6181	12447	12447					0.003641918095354413
KQKEQQVYK	9	Unmodified	_KQKEQQVYK_					0	0	0			REV__MAP3K19|p.N874K|1|0.35|ENSG00000176601|chr2:134986250-134986250|A/T|missense_variant	REV__MAP3K19|p.N874K|1|0.35|ENSG00000176601|chr2:134986250-134986250|A/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8302612304688	2	589.830037	1177.64552	0.061458	3.625E-05	0.057209	3.3744E-05	0.11867	6.9994E-05	589.830143565032	27.109	1.3337	27.195	26.975	28.308	0.086699					253	91	5	0	0	0	0.33849	1	3558	3558		1.6526	0.17072	1	1996400	+		9188	12728	6138	6182	12448	12448					0.0638048842608896
KQLAVYEEF	9	Unmodified	_KQLAVYEEF_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7924194335938	2	563.792589	1125.57063	0.18688	0.00010536	-0.43661	-0.00024616	-0.24974	-0.0001408	563.7921949230433	53.004	0.59272	53.004	52.841	53.433	0					46	23	3	0	0	0	0.24767	2	11323	11323;11339		13.042	6.8367	1	412730			9189	2281	6139	6183	12449;12450	12449					0.012863058948596517
KQLAVYEEF	9	Unmodified	_KQLAVYEEF_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.792236328125	2	563.792589	1125.57063	0.37669	0.00021238	-0.43019	-0.00024254	-0.053493	-3.0159E-05	563.7922809686283	52.965	0.43966	53.03	52.851	53.291	0.06543					51	19	4	0	0	0	0.048027	1	11133	11133		43.772	25.626	1	345500			9190	2281	6139	6183	12451	12451					0.012863058948596517
KQLVDLLQ	8	Unmodified	_KQLVDLLQ_					0	0	0		nc|ENSG00000121964|Q4AE62-3|GTDC1;ENST00000491448.5_1_2:144764747-144969145:-|nuORF;nc|ENSG00000121964|Q4AE62-2|GTDC1;nc|ENSG00000121964|Q4AE62-4|GTDC1;ENSG00000121964|ENST00000682281|GTDC1	nc|ENSG00000121964|Q4AE62-3|GTDC1	nc|ENSG00000121964|Q4AE62-3|GTDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2940673828125	2	478.792392	955.570232	-0.44327	-0.00021223	0.044975	2.1534E-05	-0.39829	-0.0001907	478.7923134163876	26.162	0.40714	26.162	26.011	26.418	0					65	34	2	0	0	0	0.53894	1	3158	3158		2.0598	0	1	38198			9191	2169	6140	6184	12452	12452					0.09066930965661868
KQMPEGSMLV	10	Unmodified	_KQMPEGSMLV_					0	0	0		SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|32|2|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2645874023438	2	560.280477	1118.5464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.074	1	82.074	81.574	82.574	0								0	0	0	0.28665	1	20094	20094		19.257	4.4187	1				9192	13420	6141	6185	12453	12453					-0.008129938546744597
KQNENPEYF	9	Unmodified	_KQNENPEYF_					0	0	0			REV__tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	REV__tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2850952148438	2	584.767103	1167.51965	0.39227	0.00022939	0.43216	0.00025271	0.82443	0.0004821	584.7668252328835	52.563	0.96784	52.563	52.305	53.273	0					100	35	4	0	0	0	0.28587	1	11060	11060		8.5933	3.8373	1	440470	+		9193	13048	6142	6186	12454	12454					-0.057406431500112376
KQNILFQQEL	10	Unmodified	_KQNILFQQEL_					0	0	0			REV__tr|U7SNB2|U7SNB2_FUSNUMobA/VirD2-likenucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01848PE=4SV=1	REV__tr|U7SNB2|U7SNB2_FUSNUMobA/VirD2-likenucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01848PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5754699707031	3	420.903072	1259.68739	0.33304	0.00014018	1.3988	0.00058876	1.7318	0.00072894	420.90337123310735	36.015	0.33023	36.015	35.854	36.184	0					17	12	2	0	0	0	0.31821	1	6108	6108		1.4551	0	1	24387	+		9194	13097	6143	6187	12455	12455					0.06793044114624536
KQPEDYFYL	9	Unmodified	_KQPEDYFYL_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B-ABHD8|1|fusion	ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7914428710938	2	601.790047	1201.56554	0.58922	0.00035459	0.78102	0.00047001	1.3702	0.0008246	601.790682895246	63.255	0.64405	63.255	63.089	63.733	0					49	22	3	0	0	0	0.03918	4	14339	14339;14353;14408;14417		45.7	23.953	1	1092300			9195	1123;7441	6144	6188	12456;12457;12458;12459	12456					-0.02717997967761221
KQPEDYFYL	9	Unmodified	_KQPEDYFYL_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B-ABHD8|1|fusion	ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7898559570312	2	601.790047	1201.56554	0.5588	0.00033628	1.8469	0.0011114	2.4057	0.0014477	601.7902295878998	63.187	0.76268	63.26	63.036	63.799	0.072701					122	30	5	0	0	0	0.03918	4	14173	14154;14173;14213;14267		45.7	20.3	1	940130			9196	1123;7441	6144	6188	12460;12461;12462;12463	12461					-0.02717997967761221
KQPPQAAPP	9	Unmodified	_KQPPQAAPP_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.71270751953125	2	467.261259	932.507966	0.018485	8.6375E-06	0.08715	4.0722E-05	0.10564	4.9359E-05	467.261213254925	34.939	0.59649	34.939	34.718	35.314	0					24	21	2	0	0	0	0.25174	1	5768	5768		7.2892	2.5332	1	40225	+		9197	8541	6145	6189	12464	12464					0.03901204617318399
KQPRPMCSW	9	Unmodified	_KQPRPMCSW_					0	0	0			REV__ENST00000561859.5_1_16:23555925-23568664:-|nuORF	REV__ENST00000561859.5_1_16:23555925-23568664:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7748413085938	2	566.773154	1131.53175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.88	1	106.88	106.38	107.38	0								0	0	0	0.2428	1	27573	27573		10.824	1.4408	1		+		9198	12486	6146	6190	12465	12465					-0.0287502121216221
KQQVWIKEQK	10	Unmodified	_KQQVWIKEQK_					0	0	0			REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF	REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.9231872558594	3	438.922467	1313.74557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.65	1	23.75	23.25	24.25	0.099739								0	0	0	0.33952	1	2347	2347		0.77653	0	1		+		9199	12568	6147	6191	12466	12466					0.10124725759874309
KQRCVVKGF	9	Unmodified	_KQRCVVKGF_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3072509765625	2	532.805311	1063.59607	0.61775	0.00032914	-0.7349	-0.00039156	-0.11715	-6.2419E-05	532.8047430661909	100.97	0.61783	101.02	100.74	101.36	0.042839					74	36	3	0	0	0	0.29576	1	25752	25752		7.2892	0.56607	1	214280			9200	2034	6148	6192	12467	12467					0.06681501936304812
KQRRGLVIP	9	Unmodified	_KQRRGLVIP_					0	0	0			REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF	REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8463134765625	2	533.845825	1065.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.59	1	61.663	61.163	62.163	0.073421								0	0	0	0.29233	1	13703	13703		0.6015	0.076735	1		+		9201	7873	6149	6193	12468	12468					0.1468852597070054
KQRRLERRREF	11	Unmodified	_KQRRLERRREF_					0	0	0			REV__ENST00000475772.5_1_7:134552484-134552556:+|nuORF	REV__ENST00000475772.5_1_7:134552484-134552556:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.6448364257812	3	525.309718	1572.90732	0.48828	0.0002565	0.046084	2.4208E-05	0.53436	0.00028071	525.3096752915545	98.808	1.1811	98.808	98.4	99.581	0					114	73	2	0	0	0	0.4185	2	25138	25138;25156		0.094841	0	1	123480	+		9202	8922	6150	6194	12469;12470	12469					0.14378707565538207
KQRRLERRREF	11	Unmodified	_KQRRLERRREF_					0	0	0			REV__ENST00000475772.5_1_7:134552484-134552556:+|nuORF	REV__ENST00000475772.5_1_7:134552484-134552556:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.6433715820312	3	525.309718	1572.90732	0.40925	0.00021498	0.29436	0.00015463	0.70361	0.00036961	525.3098138693186	98.807	0.64375	98.849	98.623	99.267	0.041931					73	42	2	0	0	0	0.4185	2	24976	24976;25020		0.094841	0	1	111240	+		9203	8922	6150	6194	12471;12472	12471					0.14378707565538207
KQSKPSSVSMA	11	Unmodified	_KQSKPSSVSMA_					0	0	0		ENST00000483428.1_1_9:125009798-125014205:-|nuORF	ENST00000483428.1_1_9:125009798-125014205:-|nuORF	ENST00000483428.1_1_9:125009798-125014205:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.772216796875	2	575.300255	1148.58596	0.17448	0.00010038	1.154	0.00066391	1.3285	0.00076429	575.3008637251187	52.462	0.37135	52.462	52.274	52.645	0					20	12	2	0	0	0	0.3095	1	11032	11032		13.042	3.6593	1	71727			9204	6769	6151	6195	12473	12473					0.017608494204068847
KQTEVMEARD	10	Unmodified	_KQTEVMEARD_					0	0	0			REV__ENST00000560809.5_1_15:52557394-52562028:-|nuORF	REV__ENST00000560809.5_1_15:52557394-52562028:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.792236328125	2	603.792795	1205.57104	0.19682	0.00011884	0.5948	0.00035913	0.79162	0.00047797	603.7931233279971	34.041	0.56747	34.041	33.883	34.45	0					25	22	2	0	0	0	0.46899	1	5484	5484		1.1933	0.59184	1	22887	+		9205	9023	6152	6196	12474	12474					-0.02352642447613107
KQTKKQKVA	9	Unmodified	_KQTKKQKVA_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.8380126953125	2	529.837665	1057.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.669	1	21.669	21.169	22.169	0								0	0	0	0.2927	1	1914	1914		0.52476	0	1				9206	4525	6153	6197	12475	12475					0.13425400013943545
KQVQSPPTE	9	Unmodified	_KQVQSPPTE_					0	0	0		ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7565002441406	2	507.266739	1012.51892	-0.18779	-9.5262E-05	0.31299	0.00015877	0.12519	6.3507E-05	507.26654829145866	30.767	0.2525	30.767	30.698	30.951	0					19	12	2	0	0	0	0.25746	1	4566	4566		3.2813	0	1	16546			9207	743	6154	6198	12476	12476					0.013165622009637445
KQVQSPPTE	9	Unmodified	_KQVQSPPTE_					0	0	0		ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	507.266739	1012.51892	-0.12619	-6.401E-05	1.2814	0.00065003	1.1552	0.00058602	507.26709980476596	30.775	0.22727	30.849	30.717	30.944	0.073782	0.040674	0.00038622	NaN	3.2813	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13048			9208	743	6154	6198							0.013165622009637445
KQWGQSLVV	9	Unmodified	_KQWGQSLVV_					0	0	0		ENST00000604430.1_1_16:29323693-29367128:+|nuORF	ENST00000604430.1_1_16:29323693-29367128:+|nuORF	ENST00000604430.1_1_16:29323693-29367128:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2650146484375	2	522.795466	1043.57638	0.097174	5.0802E-05	-1.166	-0.0006096	-1.0689	-0.0005588	522.7952024270095	35.811	0.17236	35.89	35.817	35.99	0.078827					8	6	2	0	0	0	0.25579	1	5895	5895		1.8442	0.36234	1	16768			9209	7304	6155	6199	12477	12477					0.056334491971938405
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7533569335938	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.287	1	44.287	43.787	44.787	0								0	0	0	2.4382E-13	1	8588	8588		129.77	85.365	1				9210	4058	6156	6200	12478	12478					-0.03315126690381476
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7533569335938	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.438	1	44.438	43.938	44.938	0								0	0	0	1.1171E-36	1	8634	8634		198.25	134.69	1				9211	4058	6156	6200	12479	12479					-0.03315126690381476
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7532348632812	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.575	1	44.575	44.075	45.075	0								0	0	0	0.022376	1	8675	8675		61.602	36.203	1				9212	4058	6156	6200	12480	12480					-0.03315126690381476
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7534790039062	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.21	1	44.298	43.798	44.798	0.088924								0	0	0	1.1171E-36	1	8436	8436		198.25	134.69	1				9213	4058	6156	6200	12481	12481					-0.03315126690381476
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.75341796875	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.344	1	44.432	43.932	44.932	0.088924								0	0	0	7.1999E-36	1	8476	8476		183.04	128.27	1				9214	4058	6156	6200	12482	12482					-0.03315126690381476
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.753173828125	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.495	1	44.582	44.082	45.082	0.08754								0	0	0	0.026575	1	8522	8522		59.368	37.622	1				9215	4058	6156	6200	12483	12483					-0.03315126690381476
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7532348632812	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.651	1	44.738	44.238	45.238	0.08754								0	0	0	0.072004	1	8569	8569		41.956	16.556	1				9216	4058	6156	6200	12484	12484					-0.03315126690381476
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7536010742188	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.818	1	44.906	44.406	45.406	0.08754								0	0	0	0.23204	1	8619	8619		13.042	1.4022	1				9217	4058	6156	6200	12485	12485					-0.03315126690381476
KRAERWEWKRW	11	Unmodified	_KRAERWEWKRW_					0	0	0			REV__ENST00000381989.3_1_13:25072288-25074457:-|nuORF	REV__ENST00000381989.3_1_13:25072288-25074457:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2947998046875	3	544.295297	1629.86406	0.57768	0.00031443	-3.6276	-0.0019745	-3.05	-0.0016601	544.2944526674087	71.073	0.1571	71.131	71.026	71.183	0.058578					7	5	2	0	0	0	0.4186	1	16587	16587		0.073264	0.073264	1	167960	+		9218	11675	6157	6201	12486	12486					0.07432517788242876
KRAFRFVSPVF	11	Unmodified	_KRAFRFVSPVF_					0	0	0		ENST00000307533.10_1_4:6676410-6676837:+|nuORF	ENST00000307533.10_1_4:6676410-6676837:+|nuORF	ENST00000307533.10_1_4:6676410-6676837:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.9327697753906	3	451.931185	1352.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.685	1	95.724	95.224	96.224	0.038872								0	0	0	0.33835	1	24077	24077		1.3296	0.55311	1				9219	5989	6158	6202	12487	12487					0.10945039722014371
KREDRVIF	8	Unmodified	_KREDRVIF_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8176879882812	2	531.806365	1061.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.112	1	81.136	80.636	81.636	0.023605								0	0	0	0.3795	1	19639	19639		28.487	0	1				9220	2508	6159	6203	12488	12488					0.06984253945756791
KREELVEF	8	Unmodified	_KREELVEF_					0	0	0			REV__ENSG00000152503|ENST00000513154|TRIM36	REV__ENSG00000152503|ENST00000513154|TRIM36	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.28662109375	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.948	1	92.985	92.485	93.485	0.037369								0	0	0	0.38822	1	23240	23240		7.9102	1.187	1		+		9221	9675	6160	6204	12489	12489					0.032974390976505674
KREYEKEKE	9	Unmodified	_KREYEKEKE_					0	0	0			REV__KCTD4|p.G16R|1|0.24|ENSG00000180332|chr13:45194522-45194522|C/T|missense_variant	REV__KCTD4|p.G16R|1|0.24|ENSG00000180332|chr13:45194522-45194522|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8208618164062	2	619.822409	1237.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.869	1	15.942	15.442	16.442	0.072399								0	0	0	0.29303	1	567	567		0.45834	0.057624	1		+		9222	12687	6161	6205	12490	12490					0.020955768382464157
KRFLRWYF	8	Unmodified	_KRFLRWYF_					0	0	0			REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF	REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.8983154296875	3	405.897704	1214.67128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.977	1	34.977	34.477	35.477	0								0	0	0	0.38822	1	5779	5779		6.7232	1.8262	1		+		9223	12204	6162	6206	12491	12491					0.07253427459022532
KRFLRWYF	8	Unmodified	_KRFLRWYF_					0	0	0			REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF	REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.8982238769531	3	405.897704	1214.67128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.146	1	35.146	34.646	35.646	0								0	0	0	0.38822	1	5830	5830		6.7232	1.8262	1		+		9224	12204	6162	6206	12492	12492					0.07253427459022532
KRFLRWYF	8	Unmodified	_KRFLRWYF_					0	0	0			REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF	REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.8981018066406	3	405.897704	1214.67128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.316	1	35.316	34.816	35.816	0								0	0	0	0.38822	1	5881	5881		6.7232	0	1		+		9225	12204	6162	6206	12493	12493					0.07253427459022532
KRHYSVEER	9	Unmodified	_KRHYSVEER_					0	0	0		nc|ENSG00000171109|Q8IWA4-3|MFN1;ENSG00000171109|ENST00000471841|MFN1	nc|ENSG00000171109|Q8IWA4-3|MFN1	nc|ENSG00000171109|Q8IWA4-3|MFN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8778991699219	3	401.879149	1202.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.184	1	23.184	22.684	23.684	0								0	0	0	0.2927	1	2338	2338		0.23584	0	1				9226	4427	6163	6207	12494	12494					0.022415494807319192
KRKITKTIL	9	Unmodified	_KRKITKTIL_					0	0	0		CON__Q9TRI1	CON__Q9TRI1	CON__Q9TRI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8793334960938	2	550.879333	1099.74411	0.038711	2.1325E-05	0.1888	0.00010401	0.22751	0.00012533	550.8792598693951	111.96	1.095	111.96	111.82	112.92	0					253	122	3	0	0	0	0.34646	2	28849	28849;28891		0.6015	0	1	5636700		+	9227	240	6164	6208	12495;12496	12495					0.19823136461809554
KRKLLLLLL	9	Unmodified	_KRKLLLLLL_					0	0	0		ENST00000433301.5_1_12:110943436-110952922:+|nuORF	ENST00000433301.5_1_12:110943436-110952922:+|nuORF	ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.4107666015625	2	555.410269	1108.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.88	1	105.91	105.41	106.41	0.029739								0	0	0	0.29525	1	27101	27101		0	0	1				9228	6495	6165	6209	12497	12497					0.25593487880951216
KRKSGQRR	8	Unmodified	_KRKSGQRR_					0	0	0		ENST00000379826.4_1_13:37453702-37453744:-|nuORF	ENST00000379826.4_1_13:37453702-37453744:-|nuORF	ENST00000379826.4_1_13:37453702-37453744:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.30389404296875	2	508.315223	1014.61589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.878	1	28.878	28.378	29.378	0								0	0	0	0.38822	1	3968	3968		5.2307	0	1				9229	6281	6166	6210	12498	12498					0.1091701399128624
KRKVSDVKVPL	11	Unmodified	_KRKVSDVKVPL_					0	0	0		ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1	ENSG00000134317|ENST00000324907|GRHL1	ENSG00000134317|ENST00000324907|GRHL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9060668945312	2	634.906079	1267.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.24	1	108.26	107.76	108.76	0.022224								0	0	0	0.33436	1	27708	27708		2.7352	1.2533	1				9230	2658	6167	6211	12499	12499					0.17441889173665004
KRLILLIQKK	10	Unmodified	_KRLILLIQKK_					0	0	0			REV__ENST00000354566.7_1_11:85436805-85436946:-|nuORF	REV__ENST00000354566.7_1_11:85436805-85436946:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.29730224609375	3	418.299097	1251.87546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.466	1	66.532	66.032	67.032	0.065987								0	0	0	0.34006	1	15185	15185		0.13989	0	1		+		9231	11493	6168	6212	12500	12500					0.25959946829675573
KRLKLNIK	8	Unmodified	_KRLKLNIK_					0	0	0		tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8533935546875	2	506.853119	1011.69168	-0.12201	-6.184E-05	-0.13344	-6.7634E-05	-0.25545	-0.00012947	506.85295430011547	112.14	1.2356	112.14	111.92	113.16	0					352	141	4	0	0	0	0.54081	1	28893	28893		0.79363	0	1	8677500			9232	13671	6169	6213	12501	12501					0.18630598118818398
KRLKLNIK	8	Unmodified	_KRLKLNIK_					0	0	0		tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.85296630859375	2	506.853119	1011.69168	0.22803	0.00011558	-0.35413	-0.00017949	-0.1261	-6.3915E-05	506.85281935187265	112.12	0.95386	112.14	111.94	112.89	0.014595					287	110	4	0	0	0	0.54081	3	28746	28746;28777;28803		0.79363	0	1	5817000			9233	13671	6169	6213	12502;12503;12504	12502					0.18630598118818398
KRLLVPILLP	10	Unmodified	_KRLLVPILLP_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.4044799804688	2	581.407727	1160.8009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.68	1	112.68	112.18	113.18	0								0	0	0	0.33979	1	28875	28875		0.45834	0.057624	1				9234	2425	6170	6214	12505	12505					0.2269318401831697
KRLLVPILLP	10	Unmodified	_KRLLVPILLP_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.4063110351562	2	581.407727	1160.8009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.83	1	112.83	112.33	113.33	0								0	0	0	0.33979	1	28919	28919		0.45834	0.057624	1				9235	2425	6170	6214	12506	12506					0.2269318401831697
KRLLVPILLP	10	Unmodified	_KRLLVPILLP_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.4058837890625	2	581.407727	1160.8009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.73	1	112.75	112.25	113.25	0.014023								0	0	0	0.33979	1	28771	28771		0.45834	0.057624	1				9236	2425	6170	6214	12507	12507					0.2269318401831697
KRMFFPTY	8	Unmodified	_KRMFFPTY_					0	0	0			REV__ENSG00000031698|ENST00000234677|SARS1	REV__ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2800903320312	2	545.281137	1088.54772	-0.12088	-6.5913E-05	0.79221	0.00043198	0.67133	0.00036607	545.2803937146613	29.387	0.35325	29.387	29.155	29.508	0					44	21	3	0	0	0	0.54097	1	4142	4142		0.69038	0	1	22235	+		9237	8011	6171	6215	12508	12508					0.006990082963966415
KRMPMFYLIS	10	Unmodified	_KRMPMFYLIS_					0	0	0		ENST00000295974.12_1_4:40815451-40815556:-|nuORF	ENST00000295974.12_1_4:40815451-40815556:-|nuORF	ENST00000295974.12_1_4:40815451-40815556:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3453369140625	2	643.343412	1284.67227	0.64412	0.00041439	-0.77081	-0.0004959	-0.1267	-8.151E-05	643.3430300336702	65.745	1.4113	65.745	65.224	66.635	0					128	51	4	0	0	0	0.45794	2	15354	15354;15369		3.2813	0.54611	1	1868000			9238	5959	6172	6216	12509;12510	12509					0.041321377214217136
KRNQHLFRKK	10	Unmodified	_KRNQHLFRKK_					0	0	0		ENST00000342992.10_3_2:179542611-179544107:-|nuORF	ENST00000342992.10_3_2:179542611-179544107:-|nuORF	ENST00000342992.10_3_2:179542611-179544107:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2777099609375	3	452.277467	1353.81057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.153	1	74.153	73.653	74.653	0								0	0	0	0.34005	1	17674	17674		0.15932	0	1				9239	6091	6173	6217	12511	12511					0.1478176507639546
KRPNLRQRW	9	Unmodified	_KRPNLRQRW_					0	0	0			REV__ENST00000374864.8_3_20:32957204-32957252:+|nuORF	REV__ENST00000374864.8_3_20:32957204-32957252:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.3727416992188	2	627.37053	1252.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.28	1	115.3	114.8	115.8	0.013092								0	0	0	0.2927	1	29313	29313		0.52476	0	1		+		9240	11629	6174	6218	12512	12512					0.1102523397951245
KRQRMVSPL	9	Unmodified	_KRQRMVSPL_					0	0	0			REV__ENST00000479713.1_1_Y:15591430-15591511:-|nuORF	REV__ENST00000479713.1_1_Y:15591430-15591511:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2340087890625	2	557.829317	1113.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.458	1	21.458	20.958	21.958	0								0	0	0	0.2927	1	1856	1856		0.52476	0	1		+		9241	12074	6175	6219	12513	12513					0.09180575856362339
KRRLLILGGI	10	Unmodified	_KRRLLILGGI_					0	0	0		nc|ENSG00000177300|Q8N7P3|CLDN22;ENSG00000185758|ENST00000541814|CLDN24	nc|ENSG00000177300|Q8N7P3|CLDN22	nc|ENSG00000177300|Q8N7P3|CLDN22	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.89306640625	2	569.892775	1137.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.99	1	115.99	115.49	116.49	0								0	0	0	0.34018	1	29554	29554		0	0	1				9242	5044	6176	6220	12514	12514					0.20762245073024133
KRRRDRINRCL	11	Unmodified	_KRRRDRINRCL_					0	0	0		nc|ENSG00000187821|A6NFD8-4|HELT;ENSG00000187821|ENST00000515777|HELT	nc|ENSG00000187821|A6NFD8-4|HELT	nc|ENSG00000187821|A6NFD8-4|HELT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.62762451171875	3	495.960032	1484.85827	0.36308	0.00018007	-2.0811	-0.0010322	-1.7181	-0.00085209	496.2933768485622	95.557	0.40509	95.596	95.54	95.945	0.038872					29	19	2	0	0	0	0.311	1	24105	24105		0.50596	0	1	356980			9243	5134	6177	6221	12515	12515					0.13523096004973922
KRRRGRRPQY	10	Unmodified	_KRRRGRRPQY_					0	0	0			REV__ENST00000371019.3_1_10:99093399-99093534:-|nuORF	REV__ENST00000371019.3_1_10:99093399-99093534:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.60809326171875	3	458.276349	1371.80722	0.45278	0.0002075	0.3801	0.00017419	0.83288	0.00038169	458.2764506106921	94.746	0.81271	94.746	94.466	95.279	0					43	34	2	0	0	0	0.31853	1	23913	23913		0.62683	0.063655	1	108830	+		9244	11596	6178	6222	12516	12516					0.13618515022426436
KRRRKKAR	8	Unmodified	_KRRRKKAR_					0	0	0		nc|ENSG00000176204|Q86VH4-2|LRRTM4;ENSG00000176204|ENST00000409884|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8756103515625	2	549.875782	1097.73701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.73	1	112.73	112.23	113.23	0								0	0	0	0.38822	1	28889	28889		0.79363	0	1				9245	4653	6179	6223	12517	12517					0.19205261424576747
KRRRKKSS	8	Unmodified	_KRRRKKSS_					0	0	0			REV__ENST00000389589.8_1_3:157823778-157823919:-|nuORF	REV__ENST00000389589.8_1_3:157823778-157823919:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3403930664062	2	523.338698	1044.66284	0.18729	9.8016E-05	3.4384	0.0017995	3.6257	0.0018975	523.3400330155149	109.21	0.13658	109.23	109.15	109.29	0.019402					37	17	3	0	0	0	0.53858	1	27919	27919		2.3027	1.6124	1	1853600	+		9246	11685	6180	6224	12518	12518					0.14229873542399218
KRRWMVRKM	9	Unmodified	_KRRWMVRKM_					0	0	0		ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.8719482421875	2	645.873536	1289.73252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.75	1	105.78	105.28	106.28	0.029739								0	0	0	0.2927	1	27065	27065		0.52476	0	1				9247	5607	6181	6225	12519	12519					0.09924292895129838
KRSHKTALR	9	Unmodified	_KRSHKTALR_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.834716796875	2	548.838531	1095.66251	0.36037	0.00019778	-4.0952	-0.0022476	-3.7348	-0.0020498	549.3382125313717	109.64	0.12025	109.65	109.55	109.67	0.017242					17	11	2	0	0	0	0.30005	1	28041	28041		6.7232	2.3939	1	904100	+		9248	9812	6182	6226	12520	12520					0.11850453822535201
KRSHKTALRR	10	Unmodified	_KRSHKTALRR_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8895263671875	2	626.889087	1251.76362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.04	1	109.06	108.56	109.56	0.019402								0	0	0	0.33892	1	27884	27884		1.4819	0	1		+		9249	9812	6183	6227	12521	12521					0.14780905525230992
KRVVPKKP	8	Unmodified	_KRVVPKKP_					0	0	0		TSFM-OS9|6|fusion;TSFM-OS9|8|fusion;TSFM-OS9|2|fusion;TSFM-OS9|4|fusion;TSFM-OS9|7|fusion;TSFM-OS9|5|fusion;TSFM-OS9|3|fusion;TSFM-OS9|1|fusion;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-8|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF;nc|ENSG00000135506|Q13438-7|OS9	TSFM-OS9|6|fusion	TSFM-OS9|6|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.3269348144531	2	476.326737	950.63892	-0.0039696	-1.8908E-06	0.41103	0.00019578	0.40706	0.00019389	476.3267520639898	112.22	1.6309	112.23	111.98	113.62	0.014595					338	205	4	0	0	0	0.54081	1	28761	28761		0.79363	0.79363	1	4447800			9250	13754	6184	6228	12522	12522					0.161626400560408
KRYGSDPVFRF	11	Unmodified	_KRYGSDPVFRF_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B;ENST00000476227.1_1_2:166805880-166810281:-|nuORF;nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.9103698730469	3	457.910449	1370.70952	0.2451	0.00011223	-0.034703	-1.5891E-05	0.21039	9.6341E-05	457.9103390172327	62.356	0.48123	62.429	62.235	62.717	0.072701					48	16	4	0	0	0	0.40824	1	13967	13967		2.4348	0	1	513560			9251	2227	6185	6229	12523	12523					0.03899268583018056
KRYGSDPVFRF	11	Unmodified	_KRYGSDPVFRF_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B;ENST00000476227.1_1_2:166805880-166810281:-|nuORF;nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	457.910449	1370.70952	0.5009	0.00022937	-0.34373	-0.0001574	0.15717	7.1972E-05	457.9101964074555	62.47	0.7141	62.47	62.255	62.969	0	0.020229	-0.00024857	NaN	2.4348	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428060			9252	2227	6185	6229							0.03899268583018056
KRYGSDPVFRF	11	Unmodified	_KRYGSDPVFRF_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B;ENST00000476227.1_1_2:166805880-166810281:-|nuORF;nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	457.910449	1370.70952	0.2451	0.00011223	-0.034703	-1.5891E-05	0.21039	9.6341E-05	457.9103390172327	62.356	0.48123	62.429	62.235	62.717	0.072701	-0.020229	0.00017594	NaN	2.4348	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513560			9253	2227	6185	6229							0.03899268583018056
KRYSPQFHI	9	Unmodified	_KRYSPQFHI_					0	0	0			REV__ENST00000524461.1_1_11:16769614-16769671:+|nuORF	REV__ENST00000524461.1_1_11:16769614-16769671:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.3187255859375	2	588.31964	1174.62473	0.26903	0.00015827	-0.12734	-7.4918E-05	0.14168	8.3355E-05	588.319474214145	39.177	0.51194	39.177	39.03	39.542	0					28	19	2	0	0	0	0.32831	1	7097	7097		2.9952	0.69251	1	70588	+		9254	12315	6186	6230	12524	12524					0.0443994283707525
KRYSPQFHI	9	Unmodified	_KRYSPQFHI_					0	0	0			REV__ENST00000524461.1_1_11:16769614-16769671:+|nuORF	REV__ENST00000524461.1_1_11:16769614-16769671:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.31982421875	2	588.31964	1174.62473	0.47661	0.0002804	-0.20133	-0.00011845	0.27528	0.00016195	588.3194381001127	39.118	0.36871	39.205	38.994	39.363	0.08688					31	14	3	0	0	0	0.33978	1	6930	6930		1.4819	0.79152	1	71150	+		9255	12315	6186	6230	12525	12525					0.0443994283707525
KRYVNDKFG	9	Unmodified	_KRYVNDKFG_					0	0	0			REV__ENSG00000129167|ENST00000682019|TPH1	REV__ENSG00000129167|ENST00000682019|TPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.8038940429688	2	563.803823	1125.59309	0.15163	8.5489E-05	-0.046422	-2.6173E-05	0.10521	5.9316E-05	563.8037538504448	36.018	0.97005	36.018	35.836	36.806	0					82	37	3	0	0	0	0.3354	2	6076	6076;6157		2.0598	0.21551	1	176210	+		9256	9030	6187	6231	12526;12527	12526					0.035319500831292316
KRYVNDKFG	9	Unmodified	_KRYVNDKFG_					0	0	0			REV__ENSG00000129167|ENST00000682019|TPH1	REV__ENSG00000129167|ENST00000682019|TPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8041381835938	2	563.803823	1125.59309	0.20421	0.00011514	-0.050858	-2.8674E-05	0.15335	8.6461E-05	563.8037421474982	35.911	0.72267	35.989	35.791	36.514	0.078831					67	28	3	0	0	0	0.3354	1	5915	5915		2.0598	0.21551	1	174900	+		9257	9030	6187	6231	12528	12528					0.035319500831292316
KRYYNDKF	8	Unmodified	_KRYYNDKF_					0	0	0			REV__tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1	REV__tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.27880859375	2	567.290548	1132.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.887	1	70.887	70.387	71.387	0								0	0	0	0.38719	1	16676	16676		15.847	0	1		+		9258	13178	6188	6232	12529	12529					0.005562611917866889
KSADLELKIS	10	Unmodified	_KSADLELKIS_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3182373046875	2	552.318971	1102.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.543	1	52.611	52.111	53.111	0.067173								0	0	0	0.33411	1	10950	10950		7.1017	0	1		+		9259	8261	6189	6233	12530	12530					0.07618263957647287
KSALFKRMI	9	Unmodified	_KSALFKRMI_					0	0	0			REV__nc|ENSG00000111581|P57740-3|NUP107	REV__nc|ENSG00000111581|P57740-3|NUP107	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3323364257812	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.18	1	115.19	114.69	115.69	0.013092								0	0	0	0.2927	1	29290	29290		0.52476	0	1		+		9260	8689	6190	6234	12531	12531					0.10515245630199388
KSDVSPQVK	9	Unmodified	_KSDVSPQVK_					0	0	0		nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;nc|ENSG00000184368|Q96T17|MAP7D2;ENSG00000184368|ENST00000379643|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2674560546875	2	494.277106	986.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.771	1	48.847	48.347	49.347	0.076607								0	0	0	0.26517	1	9810	9810		6.2058	0.97511	1				9261	4972	6191	6235	12532	12532					0.04585152580625618
KSDVSRYVEF	10	Unmodified	_KSDVSRYVEF_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.90582275390625	3	410.543544	1228.6088	-0.014371	-5.8998E-06	0.49064	0.00020143	0.47627	0.00019553	410.5438008191371	35.683	1.1201	35.762	35.539	36.66	0.078827					76	43	3	0	0	0	0.3184	1	5844	5844		1.7423	0	1	77480			9262	5440	6192	6236	12533	12533					0.003641918095354413
KSEEQVTK	8	Unmodified	_KSEEQVTK_					0	0	0			REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7535095214844	2	474.753464	947.492375	-0.38168	-0.0001812	0.66075	0.00031369	0.27907	0.00013249	474.7537748232882	29.696	0.39902	29.772	29.61	30.009	0.075403					42	23	3	0	0	0	0.53118	1	4069	4069		7.2892	0	1	43236	+		9263	9169	6193	6237	12534	12534					0.016528733096379256
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC|p.L715V|1|0.23|ENSG00000141367|chr17:59668791-59668791|C/G|missense_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8165893554688	2	569.2844	1136.55425	0.28632	0.000163	0.0028973	1.6494E-06	0.28921	0.00016465	569.2840529321754	76.812	0.32767	76.812	76.647	76.975	0					18	11	2	0	0	0	0.2418	1	18486	18486		13.906	0	1	108160			9264	200;3052	6194	6238	12535	12535					-0.008567752712451693
KSFSYSNSFQ	10	Unmodified	_KSFSYSNSFQ_					0	0	0		ENSG00000174652|ENST00000592904|ZNF266;nc|ENSG00000174652|Q14584|ZNF266	ENSG00000174652|ENST00000592904|ZNF266	ENSG00000174652|ENST00000592904|ZNF266	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7952270507812	2	597.774928	1193.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.269	1	68.333	67.833	68.833	0.063507								0	0	0	0.31912	1	15726	15726		15.248	3.6082	1				9265	4594	6195	6239	12536	12536					-0.05372356632960873
KSGFFVDFFD	10	Unmodified	_KSGFFVDFFD_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7682495117188	2	604.784764	1207.55498	0.62074	0.00037542	-0.0073027	-4.4166E-06	0.61344	0.000371	605.2865175186843	67.801	0.48753	67.801	67.699	68.186	0					32	18	2	0	0	0	0.43972	1	15784	15784		6.7232	0	1	144900			9266	1327	6196	6240	12537	12537					-0.040499806221987456
KSGGGFRV	8	Unmodified	_KSGGGFRV_					0	0	0		ENST00000429422.5_2_3:47893928-47894003:-|nuORF	ENST00000429422.5_2_3:47893928-47894003:-|nuORF	ENST00000429422.5_2_3:47893928-47894003:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.22802734375	2	404.22722	806.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.939	1	85.964	85.464	86.464	0.025169								0	0	0	0.38822	1	21113	21113		2.3027	1.5091	1				9267	6480	6197	6241	12538	12538					0.02892379757327035
KSGWHRIQ	8	Unmodified	_KSGWHRIQ_					0	0	0		DAB1|p.A421Pfs*80|1|0.34|ENSG00000173406|chr1:57015168-57015168|G/-|frameshift_variant	DAB1|p.A421Pfs*80|1|0.34|ENSG00000173406|chr1:57015168-57015168|G/-|frameshift_variant	DAB1|p.A421Pfs*80|1|0.34|ENSG00000173406|chr1:57015168-57015168|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7722473144531	2	506.277775	1010.541	-0.25328	-0.00012823	-0.19296	-9.7693E-05	-0.44624	-0.00022592	506.78000580970485	26.375	0.20552	26.375	26.316	26.522	0					32	15	3	0	0	0	0.3576	1	3256	3256		0.69038	0	1	26060			9268	265	6198	6242	12539	12539					0.03614831460026835
KSIDQELEHF	10	Unmodified	_KSIDQELEHF_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.87506103515625	3	415.875182	1244.60372	0.050768	2.1113E-05	0.2292	9.5317E-05	0.27996	0.00011643	415.8753357179662	29.17	0.67297	29.17	28.915	29.588	0					62	38	2	0	0	0	0.47119	1	4064	4064		0.77653	0.078866	1	25592	+		9269	9735	6199	6243	12540	12540					-0.008801120531188644
KSIDQELEHF	10	Unmodified	_KSIDQELEHF_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	415.875182	1244.60372	0.050768	2.1113E-05	0.2292	9.5317E-05	0.27996	0.00011643	415.8753357179662	29.17	0.67297	29.17	28.915	29.588	0	0.056072	-0.00029471	NaN	0.77653	62	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25592	+		9270	9735	6199	6243							-0.008801120531188644
KSIDQELEHF	10	Unmodified	_KSIDQELEHF_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	415.875182	1244.60372	-0.28412	-0.00011816	0.61244	0.0002547	0.32832	0.00013654	415.8755199806777	28.979	1.049	29.057	28.7	29.749	0.078289	-0.056072	0.00018343	NaN	0.77653	109	65	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37882	+		9271	9735	6199	6243							-0.008801120531188644
KSIFIDRAGSM	11	Unmodified	_KSIFIDRAGSM_					0	0	0			REV__nc|ENSG00000021355|P30740-2|SERPINB1	REV__nc|ENSG00000021355|P30740-2|SERPINB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.8062744140625	2	612.823898	1223.63324	0.27724	0.0001699	4.3788	0.0026835	4.6561	0.0028533	612.8265161274571	63.291	0.42738	63.363	63.167	63.594	0.072697					24	17	2	0	0	0	0.3109	1	14162	14162		2.086	0.60411	1	106940	+		9272	7999	6200	6244	12541	12541					0.030371286913805307
KSIFIDRAGSM	11	Unmodified	_KSIFIDRAGSM_					0	0	0			REV__nc|ENSG00000021355|P30740-2|SERPINB1	REV__nc|ENSG00000021355|P30740-2|SERPINB1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	612.823898	1223.63324	0.25897	0.0001587	4.9566	0.0030375	5.2155	0.0031962	612.8270116728879	63.344	0.39399	63.344	63.169	63.563	0	-0.0095057	6.7326E-05	NaN	2.086	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127820	+		9273	7999	6200	6244							0.030371286913805307
KSKLLIQL	8	Unmodified	_KSKLLIQL_					0	0	0			REV__ENST00000570242.1_1_16:31283248-31284932:+|nuORF	REV__ENST00000570242.1_1_16:31283248-31284932:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.8216247558594	2	471.820953	941.627353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.01	1	112.01	111.51	112.51	0								0	0	0	0.38822	1	28669	28669		4.756	0	1		+		9274	8066	6201	6245	12542	12542					0.15420398242054034
KSKLLIQL	8	Unmodified	_KSKLLIQL_					0	0	0			REV__ENST00000570242.1_1_16:31283248-31284932:+|nuORF	REV__ENST00000570242.1_1_16:31283248-31284932:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.8211669921875	2	471.820953	941.627353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.06	1	112.06	111.56	112.56	0								0	0	0	0.38822	1	28683	28683		4.756	0	1		+		9275	8066	6201	6245	12543	12543					0.15420398242054034
KSKLTGTRQ	9	Unmodified	_KSKLTGTRQ_					0	0	0		POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;nc|ENSG00000051341|O75417-2|POLQ;POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.80389404296875	2	509.803823	1017.59309	0.53124	0.00027083	-0.055093	-2.8087E-05	0.47615	0.00024274	509.8037313893562	80.9	2.9942	80.923	80.075	83.069	0.023605					311	107	4	0	0	0	0.32614	2	19757	19570;19757		3.2813	3.2813	1	2164500			9276	7671	6202	6246	12544;12545	12545					0.08499950083137264
KSKYANLVQ	9	Unmodified	_KSKYANLVQ_					0	0	0			REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.8011474609375	2	525.800749	1049.58694	0.068807	3.6179E-05	-0.6414	-0.00033725	-0.5726	-0.00030107	525.8003711652951	86.649	0.39734	86.649	86.263	86.66	0					19	14	2	0	0	0	0.30397	1	21453	21453		6.2058	1.4498	1	141650	+		9277	8466	6203	6247	12546	12546					0.06413431851615314
KSLEFNYPQF	10	Unmodified	_KSLEFNYPQF_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.2998657226562	2	636.816596	1271.61864	0.31857	0.00020287	-0.67038	-0.00042691	-0.35181	-0.00022404	636.8158213178593	71.236	0.31134	71.236	71.074	71.386	0					14	10	2	0	0	0	0.44246	1	16759	16759		6.2058	1.3088	1	62814	+		9278	8866	6204	6248	12547	12547					-0.006306201851202786
KSLEFNYPQF	10	Unmodified	_KSLEFNYPQF_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	636.816596	1271.61864	0.31857	0.00020287	-0.67038	-0.00042691	-0.35181	-0.00022404	636.8158213178593	71.236	0.31134	71.236	71.074	71.386	0	0.039856	-0.0012177	NaN	6.2058	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62814	+		9279	8866	6204	6248							-0.006306201851202786
KSLEFNYPQF	10	Unmodified	_KSLEFNYPQF_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	636.816596	1271.61864	0.45066	0.00028699	0.63788	0.00040622	1.0885	0.0006932	636.8168952290234	71.097	0.26195	71.156	71.056	71.318	0.058578	-0.039856	0.00044852	NaN	6.2058	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74210	+		9280	8866	6204	6248							-0.006306201851202786
KSLFMAYYR	9	Unmodified	_KSLFMAYYR_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8046264648438	2	589.804977	1177.5954	-0.27595	-0.00016275	-0.34027	-0.0002007	-0.61622	-0.00036345	589.8045786611992	15.59	0.17268	15.59	15.499	15.672	0					35	21	2	0	0	0	0.34704	1	567	567		0.52476	0	1	19702	+		9281	9494	6205	6249	12548	12548					0.013706624965607261
KSLYATFKE	9	Unmodified	_KSLYATFKE_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7945556640625	2	543.795132	1085.57571	0.15414	8.3821E-05	-0.061162	-3.3259E-05	0.092979	5.0562E-05	543.7954141217015	39.375	3.8617	39.464	39.201	43.062	0.088562					404	151	5	0	0	0	0.2125	1	7626	7626		17.113	1.2657	1	15301000			9282	7490	6206	6250	12549	12549					0.03634609757477847
KSMGVASRHEY	11	Unmodified	_KSMGVASRHEY_					0	0	0		nc|ENSG00000078699|O43439-3|CBFA2T2;ENST00000491618.1_1_20:32210926-32212581:+|nuORF	nc|ENSG00000078699|O43439-3|CBFA2T2	nc|ENSG00000078699|O43439-3|CBFA2T2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.2085266113281	3	422.208278	1263.60301	0.59998	0.00025332	0.21335	9.0077E-05	0.81333	0.00034339	422.20828703419585	60.75	0.74376	60.75	60.507	61.251	0					52	26	3	0	0	0	0.40904	1	13585	13585		2.2527	2.2527	1	290410			9283	7462	6207	6251	12550	12550					-0.018252299737696376
KSMGVASRHEY	11	Unmodified	_KSMGVASRHEY_					0	0	0		nc|ENSG00000078699|O43439-3|CBFA2T2;ENST00000491618.1_1_20:32210926-32212581:+|nuORF	nc|ENSG00000078699|O43439-3|CBFA2T2	nc|ENSG00000078699|O43439-3|CBFA2T2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	422.208278	1263.60301	0.59998	0.00025332	0.21335	9.0077E-05	0.81333	0.00034339	422.20828703419585	60.75	0.74376	60.75	60.507	61.251	0	0.047075	-0.00024828	NaN	2.2527	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290410			9284	7462	6207	6251							-0.018252299737696376
KSMGVASRHEY	11	Unmodified	_KSMGVASRHEY_					0	0	0		nc|ENSG00000078699|O43439-3|CBFA2T2;ENST00000491618.1_1_20:32210926-32212581:+|nuORF	nc|ENSG00000078699|O43439-3|CBFA2T2	nc|ENSG00000078699|O43439-3|CBFA2T2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	422.208278	1263.60301	0.068212	2.88E-05	0.67176	0.00028362	0.73997	0.00031242	422.20832250548557	60.582	0.86506	60.656	60.462	61.327	0.073418	-0.047075	0.00033236	NaN	2.2527	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214060			9285	7462	6207	6251							-0.018252299737696376
KSNMESFNTF	10	Unmodified	_KSNMESFNTF_					0	0	0		ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.768310546875	2	602.768788	1203.52302	0.38903	0.00023449	-0.30118	-0.00018154	0.087853	5.2955E-05	602.7685116819457	48.241	0.70084	48.241	48.07	48.77	0					43	23	2	0	0	0	0.40359	2	9791	9791;9846		11.495	1.3441	1	111710			9286	3166	6208	6252	12551;12552	12551					-0.07059716367643887
KSPEYESLGF	10	Unmodified	_KSPEYESLGF_					0	0	0		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2;NT5C2|p.F246Lfs*14|1|0.17|ENSG00000076685|chr10:103097321-103097324|AAGA/-|frameshift_variant	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.28515625	2	578.779679	1155.5448	0.51792	0.00029976	3.8101	0.0022052	4.328	0.002505	579.2841431296988	68.639	0.86461	68.639	68.267	69.132	0					105	31	4	0	0	0	0.36006	1	16088	16088		16.149	1.3108	1	1289400			9287	847	6209	6253	12553	12553					-0.02674588347417739
KSRKRQEPPL	10	Unmodified	_KSRKRQEPPL_					0	0	0			REV__nc|ENSG00000143375|Q9P2M7-2|CGN	REV__nc|ENSG00000143375|Q9P2M7-2|CGN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8695068359375	2	619.870028	1237.7255	-0.14789	-9.1675E-05	-0.81503	-0.00050521	-0.96292	-0.00059689	619.8693703180221	86.95	0.87386	86.977	86.706	87.58	0.027573					84	37	3	0	0	0	0.44727	1	21422	21422		5.2969	2.3016	1	708160	+		9288	9461	6210	6254	12554	12554					0.11614974819940471
KSRKRQEPPL	10	Unmodified	_KSRKRQEPPL_					0	0	0			REV__nc|ENSG00000143375|Q9P2M7-2|CGN	REV__nc|ENSG00000143375|Q9P2M7-2|CGN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	619.870028	1237.7255	-0.14789	-9.1675E-05	-0.81503	-0.00050521	-0.96292	-0.00059689	619.8693703180221	86.95	0.87386	86.977	86.706	87.58	0.027573	0.0084745	-9.9597E-05	NaN	5.2969	84	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	708160	+		9289	9461	6210	6254							0.11614974819940471
KSRRVKMW	8	Unmodified	_KSRRVKMW_					0	0	0		ENST00000409434.5_1_2:99938658-99944097:-|nuORF	ENST00000409434.5_1_2:99938658-99944097:-|nuORF	ENST00000409434.5_1_2:99938658-99944097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.818603515625	2	545.818753	1089.62295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.4	1	119.4	118.9	119.9	0								0	0	0	0.38822	1	30085	30085		0.6015	0	1				9290	6392	6211	6255	12555	12555					0.0817261054746723
KSRVLKQHV	9	Unmodified	_KSRVLKQHV_					0	0	0		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	nc|ENSG00000136286|B0I1T2-2|MYO1G	nc|ENSG00000136286|B0I1T2-2|MYO1G	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.8427734375	2	547.843282	1093.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.366	1	20.465	19.965	20.965	0.099499								0	0	0	0.29303	1	1492	1492		0.45834	0.10771	1				9291	2788	6212	6256	12556	12556					0.12892222108075657
KSSHSASIPL	10	Unmodified	_KSSHSASIPL_					0	0	0			REV__nc|ENSG00000110713|P52948-6|NUP98	REV__nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2832641601562	2	513.782556	1025.55056	0.35175	0.00018072	-4.1814	-0.0021483	-3.8296	-0.0019676	513.7802260864264	69.631	0.57419	69.693	69.473	70.047	0.06147					38	21	2	0	0	0	0.43503	1	16192	16192		7.609	0.31972	1	164250	+		9292	8672	6213	6257	12557	12557					0.03880554954912441
KSTGITKISTK	11	Unmodified	_KSTGITKISTK_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8014526367188	2	582.353345	1162.69214	0.70112	0.0004083	0.13065	7.6084E-05	0.83176	0.00048438	582.353320790415	98.419	0.76933	98.419	98.171	98.941	0					102	41	4	0	0	0	0.31097	1	25179	25179		0.96228	0.36078	1	648850			9293	4283	6214	6258	12558	12558					0.11729928257341271
KSTGITKISTK	11	Unmodified	_KSTGITKISTK_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	582.353345	1162.69214	0.79057	0.00046039	-0.018751	-1.092E-05	0.77182	0.00044947	582.3532789563677	98.378	0.5895	98.42	98.168	98.758	0.041931	0.0003404	-9.4836E-05	NaN	0.96228	78	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586120			9294	4283	6214	6258							0.11729928257341271
KSTPVTVVL	9	Unmodified	_KSTPVTVVL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586875.1_1_17:42957901-42959090:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.27655029296875	2	472.294768	942.574983	0.021431	1.0122E-05	-0.50773	-0.0002398	-0.4863	-0.00022968	472.29439359936504	48.312	0.62139	48.312	48.123	48.744	0					40	20	3	0	0	0	0.14884	1	9806	9806		36.506	14.969	1	205800			9295	1613	6215	6259	12559	12559					0.10139815108436778
KSTPVTVVL	9	Unmodified	_KSTPVTVVL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586875.1_1_17:42957901-42959090:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.276611328125	2	472.294768	942.574983	0.097343	4.5974E-05	-0.34146	-0.00016127	-0.24411	-0.00011529	472.29453498065124	48.219	0.43671	48.299	48.134	48.571	0.080032					35	14	3	0	0	0	0.18151	1	9648	9648		29.841	11.694	1	188140			9296	1613	6215	6259	12560	12560					0.10139815108436778
KSTSHGKVF	9	Unmodified	_KSTSHGKVF_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7720947265625	2	495.771991	989.529429	0.085486	4.2382E-05	0.15535	7.7019E-05	0.24084	0.0001194	495.77200243394145	33.143	0.33486	33.217	33.089	33.424	0.074322					21	13	2	0	0	0	0.33849	1	5110	5110		1.6526	0.96225	1	28085			9297	3313	6216	6260	12561	12561					0.03424589646044751
KSTSHGKVF	9	Unmodified	_KSTSHGKVF_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	495.771991	989.529429	0.068024	3.3725E-05	-0.33236	-0.00016478	-0.26434	-0.00013105	495.77195908035037	33.213	0.33134	33.213	33.103	33.434	0	-0.0021097	-0.00039194	NaN	1.6526	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19475			9298	3313	6216	6260							0.03424589646044751
KSTSLCFGHF	10	Unmodified	_KSTSLCFGHF_					0	0	0		nc|ENSG00000049247|O95399-2|UTS2	nc|ENSG00000049247|O95399-2|UTS2	nc|ENSG00000049247|O95399-2|UTS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.23095703125	2	563.771134	1125.52771	0.36191	0.00020404	3.7454	0.0021116	4.1073	0.0023156	563.7730447513527	62.307	0.42883	62.379	62.142	62.571	0.072701					22	14	2	0	0	0	0.31456	1	13943	13943		14.838	3.7238	1	118380			9299	7451	6217	6261	12562	12562					-0.030027874342067662
KSWCRRDPR	9	Unmodified	_KSWCRRDPR_					0	0	0		ENST00000285379.9_1_8:86376191-86377596:+|nuORF	ENST00000285379.9_1_8:86376191-86377596:+|nuORF	ENST00000285379.9_1_8:86376191-86377596:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8777770996094	3	401.876974	1202.60909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.103	1	28.103	27.603	28.603	0								0	0	0	0.28631	1	3739	3739		0.96228	0.33545	1				9300	5938	6218	6262	12563	12563					0.01589333048377739
KTAKKVKKAV	10	Unmodified	_KTAKKVKKAV_					0	0	0		tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8790893554688	2	550.879333	1099.74411	0.038711	2.1325E-05	0.1888	0.00010401	0.22751	0.00012533	550.8792598693951	111.96	1.095	111.96	111.82	112.92	0					253	122	3	0	0	0	0.46827	2	28619	28619;28654		1.3295	0.72803	1	5636700			9301	13675	6219	6263	12564;12565	12564					0.19823136461786817
KTCACQISQL	10	Unmodified	_KTCACQISQL_					0	0	0		ENST00000224140.5_1_9:135201753-135201831:-|nuORF	ENST00000224140.5_1_9:135201753-135201831:-|nuORF	ENST00000224140.5_1_9:135201753-135201831:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.75927734375	2	547.770277	1093.526	0.46571	0.0002551	0.19745	0.00010815	0.66316	0.00036326	547.7702533997851	63.038	1.8445	63.11	62.503	64.348	0.072697					169	68	3	0	0	0	0.30966	1	14509	14509		21.537	0	1	1189100			9302	5803	6220	6264	12566	12566					-0.017021645144723152
KTCACQISQL	10	Unmodified	_KTCACQISQL_					0	0	0		ENST00000224140.5_1_9:135201753-135201831:-|nuORF	ENST00000224140.5_1_9:135201753-135201831:-|nuORF	ENST00000224140.5_1_9:135201753-135201831:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7597045898438	2	547.770277	1093.526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.327	1	64.398	63.898	64.898	0.071014								0	0	0	0.26818	1	14536	14536		21.537	2.175	1				9303	5803	6220	6264	12567	12567					-0.017021645144723152
KTCACQISQL	10	Unmodified	_KTCACQISQL_					0	0	0		ENST00000224140.5_1_9:135201753-135201831:-|nuORF	ENST00000224140.5_1_9:135201753-135201831:-|nuORF	ENST00000224140.5_1_9:135201753-135201831:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7599487304688	2	547.770277	1093.526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.38	1	64.45	63.95	64.95	0.070404								0	0	0	0.29565	1	14552	14552		18.146	0	1				9304	5803	6220	6264	12568	12568					-0.017021645144723152
KTDFTFFMI	9	Unmodified	_KTDFTFFMI_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7689208984375	2	575.286085	1148.55762	0.28402	0.00016339	-0.66012	-0.00037976	-0.3761	-0.00021637	575.2852997035939	95.049	0.57281	95.049	94.866	95.439	0					40	24	2	0	0	0	0.25579	1	24151	24151		4.3292	0.38484	1	74112			9305	2943	6221	6265	12569	12569					-0.010718484888911917
KTEEEHFLH	9	Unmodified	_KTEEEHFLH_					0	0	0			REV__ENSG00000110060|ENST00000227474|PUS3	REV__ENSG00000110060|ENST00000227474|PUS3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2824096679688	2	585.28292	1168.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.88	1	19.88	19.38	20.38	0								0	0	0	0.29233	1	1459	1459		0.6015	0	1		+		9306	8658	6222	6266	12570	12570					-0.026246503960464906
KTEYEQRIY	9	Unmodified	_KTEYEQRIY_					0	0	0			REV__nc|ENSG00000154240|Q8N8E3-2|CEP112	REV__nc|ENSG00000154240|Q8N8E3-2|CEP112	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.5437316894531	3	410.543544	1228.6088	-0.21584	-8.8612E-05	0.57059	0.00023425	0.35475	0.00014564	410.5437606168277	33.016	1.5264	33.09	32.44	33.966	0.074322					128	69	3	0	0	0	0.34372	1	4987	4987		0.96228	0.50776	1	61653	+		9307	9707	6223	6267	12571	12571					0.003641918095354413
KTGNWVRY	8	Unmodified	_KTGNWVRY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7606201171875	2	512.272158	1022.52976	0.433	0.00022181	-3.8888	-0.0019921	-3.4558	-0.0017703	512.7706697270636	100.38	0.069717	100.38	100.34	100.41	0					5	4	2	0	0	0	0.52924	1	25660	25660		8.5933	1.304	1	22829			9308	1416	6224	6268	12572	12572					0.01940009365887363
KTHIKALA	8	Unmodified	_KTHIKALA_					0	0	0		nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2953796386719	2	441.281995	880.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.05	1	110.07	109.57	110.57	0.017242								0	0	0	0.38822	1	28138	28138		4.756	0	1				9309	4531	6225	6269	12573	12573					0.10438385376653514
KTKEDVVRLGD	11	Unmodified	_KTKEDVVRLGD_					0	0	0			REV__ENST00000554315.5_1_14:73753704-73876743:-|nuORF;REV__nc|ENSG00000133961|P49757-6|NUMB	REV__nc|ENSG00000133961|P49757-6|NUMB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.8330688476562	2	630.351334	1258.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.332	1	52.399	51.899	52.899	0.067173								0	0	0	0.33939	1	10887	10887		0.96228	0.50394	1		+		9310	12453;12794	6226	6270	12574	12574					0.06911838763653577
KTKSDMME	8	Unmodified	_KTKSDMME_					0	0	0		ENSG00000198157|ENST00000358130|HMGN5	ENSG00000198157|ENST00000358130|HMGN5	ENSG00000198157|ENST00000358130|HMGN5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2225036621094	2	485.222628	968.430703	0.22363	0.00010851	-0.0054641	-2.6513E-06	0.21816	0.00010586	485.2221312977214	91.999	0.40115	91.999	91.763	92.164	0					21	14	2	0	0	0	0.3576	1	23104	23104		2.3027	0	1	117680			9311	5349	6227	6271	12575	12575					-0.05477517705526225
KTLLHDMDAGH	11	Unmodified	_KTLLHDMDAGH_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3032836914062	2	619.303329	1236.59211	-0.15024	-9.3042E-05	0.32326	0.0002002	0.17303	0.00010716	619.303477671373	17.204	0.5162	17.288	17.084	17.6	0.083696					110	63	2	0	0	0	0.41774	1	807	807		0.26902	0.26902	1	35185			9312	2739	6228	6272	12576	12576					-0.016726323480952487
KTLLRLKR	8	Unmodified	_KTLLRLKR_					0	0	0			REV__ENST00000479977.6_1_1:108152551-108231104:-|nuORF	REV__ENST00000479977.6_1_1:108152551-108231104:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.3584594726562	2	514.358568	1026.70258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.83	1	112.83	112.33	113.33	0								0	0	0	0.38822	1	28918	28918		2.0598	1.3694	1		+		9313	12077	6229	6273	12577	12577					0.19030000493125954
KTNEKIYAL	9	Unmodified	_KTNEKIYAL_					0	0	0			REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1	REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3081665039062	2	540.308406	1078.60226	0.24544	0.00013261	-0.28021	-0.0001514	-0.034771	-1.8787E-05	540.3081256573843	20.101	0.3851	20.196	20.059	20.445	0.095234					96	40	3	0	0	0	0.33978	1	1450	1450		1.4819	0	1	104890	+		9314	13083	6230	6274	12578	12578					0.06610298648797652
KTPKNREK	8	Unmodified	_KTPKNREK_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7986145019531	2	500.79854	999.582528	0.31614	0.00015832	0.20208	0.0001012	0.51822	0.00025952	500.7985392421515	88.915	0.57107	88.947	88.679	89.25	0.032265					55	22	3	0	0	0	0.51415	1	22018	22018		10.824	0	1	496230			9315	3697	6231	6275	12579	12579					0.08271967428697735
KTPKWLKI	8	Unmodified	_KTPKWLKI_					0	0	0			REV__ENST00000393053.6_1_12:98941529-98941589:+|nuORF	REV__ENST00000393053.6_1_12:98941529-98941589:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.33392333984375	2	507.328945	1012.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.81	1	111.82	111.32	112.32	0.014595								0	0	0	0.38822	1	28499	28499		4.756	0	1		+		9316	11698	6232	6276	12580	12580					0.1375210447891959
KTPLQCVM	8	Unmodified	_KTPLQCVM_					0	0	0		ENST00000465687.1_1_3:88366676-88366832:+|nuORF	ENST00000465687.1_1_3:88366676-88366832:+|nuORF	ENST00000465687.1_1_3:88366676-88366832:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	460.23907470703125	2	460.240624	918.466695	0.44283	0.00020381	-2.3568	-0.0010847	-1.914	-0.00088088	460.2388116966301	81.028	0.79834	81.051	80.652	81.451	0.023605					70	27	4	0	0	0	0.53494	1	19628	19628		4.756	0	1	563890			9317	6633	6233	6277	12581	12581					0.004199842619868832
KTPPVLKIK	9	Unmodified	_KTPPVLKIK_					0	0	0			REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.3560791015625	2	512.349877	1022.6852	0.28595	0.00014651	-2.844	-0.0014571	-2.5581	-0.0013106	512.3481196889649	109.22	0.044662	109.23	109.21	109.26	0.019402					7	5	2	0	0	0	0.25875	1	27923	27923		1.8442	0	1	428960	+		9318	10776	6234	6278	12582	12582					0.17476660167449154
KTPPVLKIK	9	Unmodified	_KTPPVLKIK_					0	0	0			REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.349877	1022.6852	-0.037694	-1.9312E-05	0.45102	0.00023108	0.41333	0.00021177	512.3502399017245	109.22	0.096565	109.22	109.16	109.26	0	-0.0095391	0.00045005	NaN	1.8442	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544720	+		9319	10776	6234	6278							0.17476660167449154
KTPRKSALI	9	Unmodified	_KTPRKSALI_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|144|3|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|144|3|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.32861328125	2	507.326934	1012.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.83	1	111.84	111.34	112.34	0.014595								0	0	0	0.25573	1	28505	28505		8.1555	2.4237	1		+		9320	12674	6235	6279	12583	12583					0.1335001498522388
KTPSVSPN	8	Unmodified	_KTPSVSPN_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.22412109375	2	415.224342	828.434132	1.0041	0.00041691	-1.6082	-0.00066777	-0.60415	-0.00025086	415.2235415425157	80.287	1.4791	80.287	79.223	80.702	0					82	51	3	0	0	0	0.53118	1	19576	19576		7.2892	2.96	1	486700			9321	5389	6236	6280	12584	12584					0.013052364549935191
KTPVHDSNI	9	Unmodified	_KTPVHDSNI_					0	0	0			REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF	REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7666931152344	2	505.766906	1009.51926	0.2465	0.00012467	-0.25568	-0.00012931	-0.009174	-4.6399E-06	505.7666721182483	37.582	0.72007	37.666	37.445	38.165	0.084476					60	24	4	0	0	0	0.2546	1	6528	6528		12.241	1.4167	1	317490	+		9322	12375	6237	6281	12585	12585					0.014879819208090339
KTQDYVVGF	9	Unmodified	_KTQDYVVGF_					0	0	0		ENST00000463385.5_1_2:99938416-99949470:-|nuORF;nc|ENSG00000115514|O14530-2|TXNDC9;ENSG00000115514|ENST00000264255|TXNDC9	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7716674804688	2	528.771657	1055.52876	0.16511	8.7308E-05	-0.37453	-0.00019804	-0.20942	-0.00011073	528.7715503999726	51.592	0.44424	51.592	51.386	51.83	0					25	14	2	0	0	0	0.18759	1	10813	10813		27.629	14.586	1	286060			9323	1909	6238	6282	12586	12586					0.00321750206330762
KTQDYVVGF	9	Unmodified	_KTQDYVVGF_					0	0	0		ENST00000463385.5_1_2:99938416-99949470:-|nuORF;nc|ENSG00000115514|O14530-2|TXNDC9;ENSG00000115514|ENST00000264255|TXNDC9	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7716064453125	2	528.771657	1055.52876	0.26885	0.00014216	-0.39875	-0.00021085	-0.1299	-6.8688E-05	528.7713697441632	51.532	0.4552	51.602	51.405	51.86	0.069874					34	16	3	0	0	0	0.15403	1	10628	10628		34.402	21.359	1	301730			9324	1909	6238	6282	12587	12587					0.00321750206330762
KTQEGDRLA	9	Unmodified	_KTQEGDRLA_					0	0	0		nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-6|ZAN	nc|ENSG00000146839|Q9Y493-6|ZAN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.75830078125	2	509.269813	1016.52507	-0.26281	-0.00013384	-0.76988	-0.00039208	-1.0327	-0.00052592	509.77027262733344	23.958	0.13584	23.958	23.909	24.045	0					15	11	2	0	0	0	0.33849	1	2555	2555		1.6526	0.32309	1	18551			9325	3300	6239	6283	12588	12588					0.017470804324602796
KTQENGTCTL	10	Unmodified	_KTQENGTCTL_					0	0	0		nc|ENSG00000117090|Q13291-2|SLAMF1;nc|ENSG00000117090|Q13291-3|SLAMF1;ENSG00000117090|ENST00000302035|SLAMF1;nc|ENSG00000117090|Q13291-4|SLAMF1	nc|ENSG00000117090|Q13291-2|SLAMF1	nc|ENSG00000117090|Q13291-2|SLAMF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2647094726562	2	547.760963	1093.50737	-0.064523	-3.5343E-05	-1.0032	-0.0005495	-1.0677	-0.00058484	547.7585431991363	31.288	1.1558	31.288	30.951	32.107	0					151	51	6	0	0	0	0.45133	1	4653	4653		4.5289	0.19963	1	97902			9326	1985	6240	6284	12589	12589					-0.035640028846728455
KTQHEPVI	8	Unmodified	_KTQHEPVI_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1482238769531	2	476.266542	950.51853	-0.43667	-0.00020797	-0.31833	-0.00015161	-0.755	-0.00035958	476.26640807504975	44.62	0.24562	44.62	44.502	44.747	0					13	8	2	0	0	0	0.3576	1	8718	8718		7.9102	1.187	1	64337			9327	2194	6241	6285	12590	12590					0.04129187271757928
KTSSDEYEEAL	11	Unmodified	_KTSSDEYEEAL_					0	0	0			REV__nc|ENSG00000143624|Q68E01-4|INTS3	REV__nc|ENSG00000143624|Q68E01-4|INTS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.2869262695312	2	636.285522	1270.55649	0.09937	6.3227E-05	1.2832	0.0008165	1.3826	0.00087973	636.2863308058371	72.499	0.63386	72.555	72.321	72.954	0.055939					51	21	3	0	0	0	0.39906	1	16990	16990		4.5289	0.33936	1	297170	+		9328	9471	6242	6286	12591	12591					-0.0679643611474603
KTTARDCWML	10	Unmodified	_KTTARDCWML_					0	0	0			REV__ENST00000530022.5_1_11:8706389-8707279:+|nuORF	REV__ENST00000530022.5_1_11:8706389-8707279:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.6744995117188	2	612.796826	1223.5791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.127	1	60.127	59.627	60.627	0								0	0	0	0.33784	1	13395	13395		2.7352	0.67545	1		+		9329	12349	6243	6287	12592	12592					-0.023747867318434146
KTTDGWTPV	9	Unmodified	_KTTDGWTPV_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.7742919921875	2	502.756007	1003.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.937	1	47.937	47.437	48.437	0								0	0	0	0.24643	1	9689	9689		10.074	0	1				9330	851	6244	6288	12593	12593					-0.004148228277699673
KTTILYRFL	9	Unmodified	_KTTILYRFL_					0	0	0		ENSG00000141748|ENST00000269586|ARL5C	ENSG00000141748|ENST00000269586|ARL5C	ENSG00000141748|ENST00000269586|ARL5C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3489379882812	2	577.850242	1153.68593	0.4293	0.00024807	0.027725	1.6021E-05	0.45702	0.00026409	577.8503151670606	104.15	0.043274	104.19	104.18	104.22	0.03791					6	3	2	0	0	0	0.25174	1	26628	26628		7.2892	0.56607	1	109670			9331	3078	6245	6289	12594	12594					0.11523454816506273
KTTSRRKA	8	Unmodified	_KTTSRRKA_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2912902832031	2	474.290882	946.567212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.909	1	76.948	76.448	77.448	0.03923								0	0	0	0.38822	1	18362	18362		2.0598	1.2661	1		+		9332	10288	6246	6290	12595	12595					0.09179100631513393
KTWYLCRST	9	Unmodified	_KTWYLCRST_					0	0	0			REV__ENST00000550578.1_1_12:53547103-53547616:+|nuORF	REV__ENST00000550578.1_1_12:53547103-53547616:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7767944335938	2	579.292233	1156.56991	0.28457	0.00016485	1.1901	0.00068941	1.4747	0.00085426	579.2917422236368	71.874	0.81518	71.93	71.677	72.493	0.055939					51	28	3	0	0	0	0.25579	1	16955	16955		4.3292	0	1	136840	+		9333	12433	6247	6291	12596	12596					-0.002108120258526469
KTYVRQQQ	8	Unmodified	_KTYVRQQQ_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000486708.1_1_22:31924838-31946432:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7883911132812	2	525.788173	1049.56179	-0.18627	-9.7938E-05	0.21329	0.00011214	0.027017	1.4205E-05	525.7881777676192	25.921	0.29782	26.012	25.889	26.187	0.091507					38	24	2	0	0	0	0.53894	1	2978	2978		2.0598	0	1	17778			9334	5346	6248	6292	12597	12597					0.03899377049060604
KTYYKKWW	8	Unmodified	_KTYYKKWW_					0	0	0			REV__ENST00000579647.1_1_18:2653155-2653212:-|nuORF	REV__ENST00000579647.1_1_18:2653155-2653212:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.81884765625	2	601.821484	1201.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.009	1	29.009	28.509	29.509	0								0	0	0	0.38822	1	4007	4007		0.69038	0.16561	1		+		9335	12549	6249	6293	12598	12598					0.03566612610916309
KVAGKLNV	8	Unmodified	_KVAGKLNV_					0	0	0			REV__nc|ENSG00000157181|Q5SWX8-3|ODR4	REV__nc|ENSG00000157181|Q5SWX8-3|ODR4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	414.768310546875	2	414.76872	827.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.16	1	111.17	110.67	111.67	0.015678								0	0	0	0.38822	1	28350	28350		2.5775	1.7838	1		+		9336	9771	6250	6294	12599	12599					0.10222696485311644
KVEMGFGGGGG	11	Unmodified	_KVEMGFGGGGG_					0	0	0		ENSG00000236104|ENST00000431845|ZBTB22	ENSG00000236104|ENST00000431845|ZBTB22	ENSG00000236104|ENST00000431845|ZBTB22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.73651123046875	2	498.234384	994.454216	-0.10225	-5.0945E-05	0.23726	0.00011821	0.13501	6.7265E-05	498.2343298346699	26.296	0.63725	26.296	26.102	26.739	0					80	48	2	0	0	0	0.41892	1	3296	3296		0	0	1	20292			9337	5629	6251	6295	12600	12600					-0.04323335876654255
KVFLGRDTY	9	Unmodified	_KVFLGRDTY_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8011474609375	2	549.800749	1097.58694	0.25063	0.0001378	0.33541	0.00018441	0.58605	0.00032221	549.8007615515826	36.178	0.70428	36.178	36.047	36.751	0					45	26	3	0	0	0	0.25594	1	6145	6145		4.897	1.3005	1	69593			9338	761	6252	6296	12601	12601					0.042054318516193234
KVFLGRDTY	9	Unmodified	_KVFLGRDTY_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8016357421875	2	549.800749	1097.58694	0.30554	0.00016799	0.30331	0.00016676	0.60886	0.00033475	549.8008120820589	36.115	0.59009	36.197	35.993	36.583	0.081715					43	23	3	0	0	0	0.24942	1	5986	5986		10.151	5.2536	1	124960			9339	761	6252	6296	12602	12602					0.042054318516193234
KVFQYKLI	8	Unmodified	_KVFQYKLI_					0	0	0			REV__ENST00000367059.3_2_1:207646482-207647163:+|nuORF	REV__ENST00000367059.3_2_1:207646482-207647163:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.7611694335938	2	519.820953	1037.62735	0.83644	0.0004348	-3.2022	-0.0016646	-2.3658	-0.0012298	519.8193294820429	80.965	1.3244	80.965	80.456	81.78	0					59	40	3	0	0	0	0.3576	1	19811	19811		8.5933	0	1	210850	+		9340	11554	6253	6297	12603	12603					0.11004398242016578
KVFRNFVD	8	Unmodified	_KVFRNFVD_					0	0	0		tr|U7SXA5|U7SXA5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00955PE=4SV=1	tr|U7SXA5|U7SXA5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00955PE=4SV=1	tr|U7SXA5|U7SXA5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00955PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2518310546875	2	512.782359	1023.55016	-0.10707	-5.4904E-05	-0.24412	-0.00012518	-0.35119	-0.00018009	512.7822638712797	27.564	0.37196	27.651	27.57	27.942	0.0867					37	25	2	0	0	0	0.3576	1	3453	3453		1.8442	0	1	34478			9341	13643	6254	6298	12604	12604					0.039331800256945826
KVGRWWQSGLS	11	Unmodified	_KVGRWWQSGLS_					0	0	0			REV__ENST00000591502.1_1_19:33481365-33482797:-|nuORF	REV__ENST00000591502.1_1_19:33481365-33482797:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.88201904296875	3	435.235045	1302.6833	-0.074439	-3.2399E-05	0.036093	1.5709E-05	-0.038346	-1.669E-05	435.2351285569168	45.681	0.96741	45.767	45.368	46.336	0.085617					66	36	3	0	0	0	0.311	1	8894	8894		0.50596	0	1	61791	+		9342	12583	6255	6299	12605	12605					0.04406999411548895
KVHLMFRRLI	10	Unmodified	_KVHLMFRRLI_					0	0	0			REV__ENST00000475441.5_1_1:28905087-28907099:-|nuORF	REV__ENST00000475441.5_1_1:28905087-28907099:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.2729187011719	3	438.272665	1311.79617	0.27859	0.0001221	0.55696	0.0002441	0.83556	0.0003662	438.2727251786709	102.66	0.90846	102.7	102.31	103.21	0.040916					162	71	4	0	0	0	0.47119	2	26168	26168;26252		0.77653	0	1	405370	+		9343	12050	6256	6300	12606;12607	12606					0.15273976603907613
KVISITKAL	9	Unmodified	_KVISITKAL_					0	0	0		tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.8266906738281	2	486.826235	971.637917	-0.24352	-0.00011855	1.4659	0.00071364	1.2224	0.00059509	486.82688472716313	112.43	0.37075	112.43	112.34	112.71	0					39	35	2	0	0	0	0.33849	1	28836	28836		1.6526	0.85899	1	457400			9344	13697	6257	6301	12608	12608					0.15096380896466144
KVKIIRNKK	9	Unmodified	_KVKIIRNKK_					0	0	0		ENSG00000106648|ENST00000392800|GALNTL5	ENSG00000106648|ENST00000392800|GALNTL5	ENSG00000106648|ENST00000392800|GALNTL5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8912963867188	2	563.892775	1125.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.8	1	110.81	110.31	111.31	0.015678								0	0	0	0.2927	1	28271	28271		0.52476	0.52476	1				9345	1532	6258	6302	12609	12609					0.2131424507297197
KVKKPKKVH	9	Unmodified	_KVKKPKKVH_					0	0	0		AREL1|p.Y354H|1|0.05|ENSG00000119682|chr14:74675719-74675719|A/G|missense_variant	AREL1|p.Y354H|1|0.05|ENSG00000119682|chr14:74675719-74675719|A/G|missense_variant	AREL1|p.Y354H|1|0.05|ENSG00000119682|chr14:74675719-74675719|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3740844726562	2	546.374218	1090.73388	0.29563	0.00016152	0.096206	5.2564E-05	0.39184	0.00021409	546.3740782444253	109.39	0.48048	109.41	109.14	109.62	0.019402					97	54	2	0	0	0	0.3182	2	27942	27942;27983		4.3292	3.8045	1	1100200			9346	46	6259	6303	12610;12611	12610					0.19214573527210632
KVKKVHWK	8	Unmodified	_KVKKVHWK_					0	0	0		ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.839111328125	2	526.840011	1051.66547	0.20131	0.00010606	-1.904	-0.0010031	-1.7027	-0.00089704	526.8385583775474	109.47	0.34131	109.49	109.28	109.62	0.019402					57	36	2	0	0	0	0.53817	1	27986	27986		2.5775	0.27475	1	449230			9347	6546	6260	6304	12612	12612					0.14170328947352573
KVLCAPGK	8	Unmodified	_KVLCAPGK_					0	0	0			REV__ENST00000360003.7_1_10:121607217-121608973:-|nuORF	REV__ENST00000360003.7_1_10:121607217-121608973:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.243408203125	2	408.244024	814.473494	0.083302	3.4008E-05	-1.4593	-0.00059575	-1.376	-0.00056175	408.2435208169285	109.53	0.2515	109.55	109.38	109.64	0.019409					43	24	4	0	0	0	0.53817	1	28028	28028		2.5775	1.7838	1	1715700	+		9348	7775	6261	6305	12613	12613					0.05883665204862609
KVLCAPGK	8	Unmodified	_KVLCAPGK_					0	0	0			REV__ENST00000360003.7_1_10:121607217-121608973:-|nuORF	REV__ENST00000360003.7_1_10:121607217-121608973:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	408.244024	814.473494	0.14808	6.0453E-05	-1.1055	-0.00045132	-0.95743	-0.00039087	408.2435234124515	109.51	0.2338	109.51	109.4	109.63	0	-0.02183	0.00018787	NaN	2.5775	33	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1821100	+		9349	7775	6261	6305							0.05883665204862609
KVLCAPGK	8	Unmodified	_KVLCAPGK_					0	0	0			REV__ENST00000360003.7_1_10:121607217-121608973:-|nuORF	REV__ENST00000360003.7_1_10:121607217-121608973:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	408.244024	814.473494	0.083302	3.4008E-05	-1.4593	-0.00059575	-1.376	-0.00056175	408.2435208169285	109.53	0.2515	109.55	109.38	109.64	0.019409	0.02183	-0.00010101	NaN	2.5775	43	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1715700	+		9350	7775	6261	6305							0.05883665204862609
KVLVGPTE	8	Unmodified	_KVLVGPTE_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.7511291503906	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.955	1	72.955	72.455	73.455	0								0	0	0	0.38822	1	17307	17307		2.3027	0	1		+		9351	8790	6262	6306	12614	12614					0.06383284011519663
KVNSISPGSPA	11	Unmodified	_KVNSISPGSPA_					0	0	0		ENST00000544724.5_1_12:122337523-122354214:+|nuORF;nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9	ENST00000544724.5_1_12:122337523-122354214:+|nuORF	ENST00000544724.5_1_12:122337523-122354214:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7901000976562	2	528.787838	1055.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.814	1	20.914	20.414	21.414	0.099499								0	0	0	0.33362	1	1600	1600		2.9952	0	1				9352	1682	6263	6307	12615	12615					0.03556537609347288
KVPPAINQF	9	Unmodified	_KVPPAINQF_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.29193115234375	2	507.292559	1012.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.881	1	46.881	46.381	47.381	0								0	0	0	0.22204	1	9372	9372		14.838	4.0143	1				9353	3356	6264	6308	12616	12616					0.06478350685517853
KVPPAINQF	9	Unmodified	_KVPPAINQF_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2929992675781	2	507.292559	1012.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.717	1	47.717	47.217	48.217	0								0	0	0	0.26267	1	9623	9623		6.7232	2.3939	1				9354	3356	6264	6308	12617	12617					0.06478350685517853
KVPPAINQF	9	Unmodified	_KVPPAINQF_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2928771972656	2	507.292559	1012.57057	0.032399	1.6436E-05	-0.23251	-0.00011795	-0.20011	-0.00010152	507.2923871053182	46.279	1.0703	46.365	45.447	46.518	0.085617					68	40	2	0	0	0	0.19398	2	9018	8937;9018		19.257	15.313	1	154790			9355	3356	6264	6308	12618;12619	12619					0.06478350685517853
KVPPAINQF	9	Unmodified	_KVPPAINQF_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2912292480469	2	507.292559	1012.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.717	1	46.8	46.3	47.3	0.083096								0	0	0	0.19239	1	9191	9191		19.257	9.8739	1				9356	3356	6264	6308	12620	12620					0.06478350685517853
KVPPAINQF	9	Unmodified	_KVPPAINQF_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2925720214844	2	507.292559	1012.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.517	1	47.6	47.1	48.1	0.083096								0	0	0	0.26267	1	9430	9430		6.7232	2.3939	1				9357	3356	6264	6308	12621	12621					0.06478350685517853
KVPPAINQF	9	Unmodified	_KVPPAINQF_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7825622558594	2	507.292559	1012.57057	0.28818	0.00014619	-0.75708	-0.00038406	-0.46891	-0.00023787	507.2921974657857	46.986	0.73643	47.069	46.725	47.461	0.083096					39	28	2	0	0	0	0.21603	1	9348	9348		20.454	4.6064	1	65370			9358	3356	6264	6308	12622	12622					0.06478350685517853
KVRCIKVQ	8	Unmodified	_KVRCIKVQ_					0	0	0		nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-3|ATP13A4	nc|ENSG00000127249|Q4VNC1-2|ATP13A4	nc|ENSG00000127249|Q4VNC1-2|ATP13A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2878112792969	2	487.302404	972.590256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.92	1	108.94	108.44	109.44	0.019402								0	0	0	0.38822	1	27858	27858		5.2307	0.47466	1				9359	2359	6265	6309	12623	12623					0.10286403424629498
KVRLVVVR	8	Unmodified	_KVRLVVVR_					0	0	0			REV__ENSG00000061794|ENST00000081029|MRPS35	REV__ENSG00000061794|ENST00000081029|MRPS35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.8398132324219	2	484.840011	967.665469	-0.31706	-0.00015372	0.36945	0.00017912	0.052392	2.5402E-05	484.84013090430375	112.19	1.1087	112.19	111.92	113.02	0					333	123	4	0	0	0	0.54081	2	28691	28691;28728		0.79363	0	1	8961500	+		9360	8082	6266	6310	12624;12625	12624					0.1803432894736261
KVSKKGRD	8	Unmodified	_KVSKKGRD_					0	0	0			REV__ENST00000471061.1_1_10:105163006-105164949:+|nuORF	REV__ENST00000471061.1_1_10:105163006-105164949:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2928771972656	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.66	1	115.67	115.17	116.17	0.013092								0	0	0	0.38822	1	29393	29393		2.3027	0.4585	1		+		9361	9600	6267	6311	12626	12626					0.08380295882943756
KVTAWAAC	8	Unmodified	_KVTAWAAC_					0	0	0		ENST00000465224.5_1_2:97494197-97494470:+|nuORF	ENST00000465224.5_1_2:97494197-97494470:+|nuORF	ENST00000465224.5_1_2:97494197-97494470:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.27447509765625	2	425.218006	848.421459	0.11866	5.0458E-05	-2.6036	-0.0011071	-2.485	-0.0010567	425.2181153409237	109.54	0.13268	109.56	109.51	109.65	0.019402					36	11	4	0	0	0	0.3576	1	28018	28018		2.8892	0	1	2295900			9362	6630	6268	6312	12627	12627					-0.008814982089120349
KVTIKGKRHW	10	Unmodified	_KVTIKGKRHW_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8946533203125	2	626.885481	1251.75641	-0.23037	-0.00014441	4.4789	0.0028078	4.2485	0.0026633	626.8893068206469	108.17	0.034363	108.17	108.15	108.18	0					6	4	2	0	0	0	0.45627	1	27899	27899		3.5965	0.8613	1	3169300			9363	5244	6269	6313	12628	12628					0.14060172924837389
KVVDGHYAPV	10	Unmodified	_KVVDGHYAPV_					0	0	0			REV__ENSG00000143772|ENST00000429204|ITPKB	REV__ENSG00000143772|ENST00000429204|ITPKB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7931518554688	2	542.792924	1083.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.134	1	28.216	27.716	28.716	0.082134								0	0	0	0.33905	1	3622	3622		1.3295	0	1		+		9364	9475	6270	6314	12629	12629					0.032851453345756454
KVVKKADMINK	11	Unmodified	_KVVKKADMINK_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.8107299804688	2	637.386665	1272.75878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.115	1	90.149	89.649	90.649	0.034065								0	0	0	0.33873	1	22381	22381		1.1933	0.66858	1				9365	2125	6271	6315	12630	12630					0.13330840547610023
KVVKKVTT	8	Unmodified	_KVVKKVTT_					0	0	0			REV__nc|ENSG00000198561|O60716-24|CTNND1	REV__nc|ENSG00000198561|O60716-24|CTNND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.30657958984375	2	451.805303	901.596052	0.070229	3.173E-05	-0.71926	-0.00032497	-0.64903	-0.00029324	451.80490823163	112.4	0.95267	112.4	112.14	113.09	0					287	108	4	0	0	0	0.54081	1	28854	28854		0.79363	0	1	5530800	+		9366	7865	6272	6316	12631	12631					0.14131825207925885
KVVLFLMKSI	10	Unmodified	_KVVLFLMKSI_					0	0	0		ENST00000479285.5_1_1:114438325-114438811:-|nuORF	ENST00000479285.5_1_1:114438325-114438811:-|nuORF	ENST00000479285.5_1_1:114438325-114438811:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.823974609375	2	589.372495	1176.73044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.81	1	106.81	106.31	107.31	0								0	0	0	0.33805	1	27551	27551		2.4985	1.897	1				9367	6732	6273	6317	12632	12632					0.14914142638349404
KVYAVIKLS	9	Unmodified	_KVYAVIKLS_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.826171875	2	510.826235	1019.63792	-0.054069	-2.762E-05	-0.42447	-0.00021683	-0.47853	-0.00024445	510.8260210822894	45.97	0.50917	45.97	45.782	46.291	0					27	17	2	0	0	0	0.26684	1	9101	9101		10.824	0.75	1	87481	+		9368	8167	6274	6318	12633	12633					0.12888380896470153
KVYYYRLA	8	Unmodified	_KVYYYRLA_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2564697265625	2	538.300384	1074.58622	0.44363	0.00023881	-4.1073	-0.002211	-3.6637	-0.0019721	538.2977128340317	36.973	0.47193	37.055	36.739	37.211	0.081711					28	18	2	0	0	0	0.3576	1	6278	6278		4.756	0	1	46162	+		9369	9811	6275	6319	12634	12634					0.051906372025541714
KWCHFMWW	8	Unmodified	_KWCHFMWW_					0	0	0			REV__PGM2L1|p.D367H|1|0.08|ENSG00000165434|chr11:74345588-74345588|C/G|missense_variant	REV__PGM2L1|p.D367H|1|0.08|ENSG00000165434|chr11:74345588-74345588|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.18365478515625	3	408.514097	1222.52046	0.1693	6.9162E-05	2.1448	0.00087618	2.3141	0.00094534	408.8492734092818	76.136	0.58109	76.175	76.027	76.608	0.03923					32	27	2	0	0	0	0.3576	1	18228	18228		1.8442	1.2174	1	1710000	+		9370	12955	6276	6320	12635	12635					-0.08189798515627444
KWECEEETPE	10	Unmodified	_KWECEEETPE_					0	0	0			REV__ENST00000549988.5_1_12:76453547-76478450:-|nuORF	REV__ENST00000549988.5_1_12:76453547-76478450:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.2578735351562	2	640.260993	1278.50743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.524	1	26.616	26.116	27.116	0.091507								0	0	0	0.33984	1	3156	3156		0.40072	0.1317	1		+		9371	10722	6277	6321	12636	12636					-0.1206804767534777
KWFESGPLLF	10	Unmodified	_KWFESGPLLF_					0	0	0		ENST00000606994.1_1_5:32174612-32175047:+|nuORF	ENST00000606994.1_1_5:32174612-32175047:+|nuORF	ENST00000606994.1_1_5:32174612-32175047:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.32763671875	2	612.326599	1222.63865	0.52987	0.00032446	3.8442	0.0023539	4.374	0.0026783	612.3292839526262	79.883	0.92339	79.883	79.59	80.513	0					49	31	3	0	0	0	0.14333	1	19434	19434		40.239	25.401	1	223550			9372	7314	6278	6322	12637	12637					0.03623175545521917
KWFESGPLLF	10	Unmodified	_KWFESGPLLF_					0	0	0		ENST00000606994.1_1_5:32174612-32175047:+|nuORF	ENST00000606994.1_1_5:32174612-32175047:+|nuORF	ENST00000606994.1_1_5:32174612-32175047:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3262939453125	2	612.326599	1222.63865	0.33319	0.00020402	0.96445	0.00059056	1.2976	0.00079458	612.3268417957152	79.917	0.33653	79.943	79.742	80.078	0.026436					27	11	3	0	0	0	0.072643	1	19278	19278		51.415	28.679	1	197400			9373	7314	6278	6322	12638	12638					0.03623175545521917
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.9169006347656	3	433.916876	1298.7288	0.46988	0.00020389	-0.52842	-0.00022929	-0.058539	-2.5401E-05	433.9167724505204	57.918	0.56753	57.918	57.65	58.217	0					88	19	5	0	0	0	1.7199E-05	3	12783	12689;12738;12783		142.08	110.04	1	7503000			9374	2531	6279	6323	12639;12640;12641	12641					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.9167785644531	3	433.916876	1298.7288	0.20321	8.8178E-05	-0.41183	-0.0001787	-0.20862	-9.0522E-05	433.91659966285295	58.373	3.191	58.373	58.256	61.447	0					210	118	4	0	0	0	0.004443	11	12853	12853;12898;12940;13003;13053;13100;13153;13252;13506;13572;13784		93.166	74.445	1	1626100			9375	2531	6279	6323	12642;12643;12644;12645;12646;12647;12648;12649;12650;12651;12652	12642					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.9169921875	3	433.916876	1298.7288	0.58279	0.00025288	-0.70044	-0.00030393	-0.11764	-5.1047E-05	433.9165188991154	62.802	0.59357	62.802	62.521	63.115	0					32	22	2	0	0	0	0.31389	1	14241	14241		4.897	3.1547	1	82320			9376	2531	6279	6323	12653	12653					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.9170837402344	3	433.916876	1298.7288	0.16627	7.2149E-05	-0.21631	-9.386E-05	-0.050035	-2.1711E-05	433.91698047486085	57.781	0.7887	57.849	57.393	58.182	0.068375					116	29	6	0	0	0	8.9172E-06	4	12551	12507;12551;12597;12639		149.91	107.6	1	13716000			9377	2531	6279	6323	12654;12655;12656;12657	12655					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.91693115234375	3	433.916876	1298.7288	0.06992	3.0339E-05	-0.16389	-7.1114E-05	-0.09397	-4.0775E-05	433.91673691532435	58.21	2.1681	58.28	58.163	60.331	0.070477					155	82	4	0	0	0	0.0046221	12	12685	12685;12733;12779;12799;12827;12878;12925;13025;13094;13163;13213;13273		86.332	65.751	1	1827500			9378	2531	6279	6323	12658;12659;12660;12661;12662;12663;12664;12665;12666;12667;12668;12669	12658					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.873046875	3	433.916876	1298.7288	0.21912	9.508E-05	-0.75698	-0.00032846	-0.53785	-0.00023338	433.9165236275576	62.41	0.62491	62.482	62.309	62.934	0.072697					25	21	2	0	0	0	0.29334	1	14035	14035		7.609	5.8667	1	110930			9379	2531	6279	6323	12670	12670					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.9169616699219	3	433.916876	1298.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.397	1	60.47	59.97	60.97	0.073421								0	0	0	0.22495	1	13341	13341		14.405	11.086	1				9380	2531	6279	6323	12671	12671					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.9166259765625	3	433.916876	1298.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.567	1	60.64	60.14	61.14	0.073421								0	0	0	0.22495	1	13393	13393		14.405	10.813	1				9381	2531	6279	6323	12672	12672					0.09138269664572363
KWFKQRLAKWR	11	Unmodified	_KWFKQRLAKWR_					0	0	0		ENST00000554144.5_1_4:57514888-57516908:-|nuORF;nc|ENSG00000171476|Q9BPY8|HOPX;ENSG00000171476|ENST00000420433|HOPX	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3106079101562	3	516.308767	1545.90447	0.6416	0.00033127	1.6399	0.0008467	2.2815	0.001178	516.3094462309514	97.714	0.48604	97.714	97.461	97.947	0					38	22	2	0	0	0	0.4185	1	24835	24835		0.094841	0.094841	1	91161			9382	4439	6280	6324	12673	12673					0.15335484178672232
KWFKQRLAKWR	11	Unmodified	_KWFKQRLAKWR_					0	0	0		ENST00000554144.5_1_4:57514888-57516908:-|nuORF;nc|ENSG00000171476|Q9BPY8|HOPX;ENSG00000171476|ENST00000420433|HOPX	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3102416992188	3	516.308767	1545.90447	0.50444	0.00026045	2.0362	0.0010513	2.5406	0.0013117	516.6441336586796	99.85	0.50148	99.85	99.807	100.31	0					51	26	3	0	0	0	0.31101	1	25618	25618		0.094841	0	1	257890			9383	4439	6280	6324	12674	12674					0.15335484178672232
KWGRKKGP	8	Unmodified	_KWGRKKGP_					0	0	0			REV__ENST00000333461.5_1_17:37367130-37367274:-|nuORF	REV__ENST00000333461.5_1_17:37367130-37367274:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.792724609375	2	478.793061	955.571569	-0.34712	-0.0001662	-1.2664	-0.00060636	-1.6136	-0.00077256	478.79231548601877	26.032	0.37991	26.124	25.94	26.32	0.091507					55	33	2	0	0	0	0.54097	1	3068	3068		0.69038	0	1	44532	+		9384	11428	6281	6325	12675	12675					0.09200609845083818
KWGYLYYA	8	Unmodified	_KWGYLYYA_					0	0	0			REV__nc|ENSG00000070614|P52848-2|NDST1	REV__nc|ENSG00000070614|P52848-2|NDST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2634887695312	2	532.26601	1062.51747	0.010227	5.4433E-06	-4.3285	-0.0023039	-4.3183	-0.0022985	532.2630740117294	33.8	0.5717	33.8	33.519	34.091	0					29	20	2	0	0	0	0.54081	1	5427	5427		0.79363	0.10326	1	22843	+		9385	8151	6282	6326	12676	12676					-0.01129027097135804
KWGYLYYA	8	Unmodified	_KWGYLYYA_					0	0	0			REV__nc|ENSG00000070614|P52848-2|NDST1	REV__nc|ENSG00000070614|P52848-2|NDST1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	532.26601	1062.51747	0.14897	7.9294E-05	-4.3563	-0.0023187	-4.2073	-0.0022394	532.2634335992014	33.637	0.37482	33.711	33.571	33.946	0.074322	-0.044201	-1.0404E-05	NaN	0.79363	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20922	+		9386	8151	6282	6326							-0.01129027097135804
KWHFILSM	8	Unmodified	_KWHFILSM_					0	0	0			REV__ENST00000469270.1_1_3:135820951-135825463:+|nuORF	REV__ENST00000469270.1_1_3:135820951-135825463:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2815551757812	2	531.28368	1060.55281	0.30816	0.00016372	-3.5969	-0.001911	-3.2888	-0.0017473	531.2810490669799	77.947	0.61896	77.947	77.716	78.335	0					34	20	2	0	0	0	0.45211	1	18836	18836		19.257	1.8143	1	147790	+		9387	12019	6283	6327	12677	12677					0.02495312158998786
KWHFILSM	8	Unmodified	_KWHFILSM_					0	0	0			REV__ENST00000469270.1_1_3:135820951-135825463:+|nuORF	REV__ENST00000469270.1_1_3:135820951-135825463:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.232666015625	2	531.28368	1060.55281	0.30816	0.00016372	-3.5969	-0.001911	-3.2888	-0.0017473	531.2810490669799	77.947	0.61896	77.947	77.716	78.335	0					34	20	2	0	0	0	0.33323	1	18813	18813		32.305	2.4649	1	147790	+		9388	12019	6283	6327	12678	12678					0.02495312158998786
KWIKLLLLII	10	Unmodified	_KWIKLLLLII_					0	0	0			REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.2973937988281	3	418.296694	1251.86825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.969	1	65.969	65.469	66.469	0								0	0	0	0.34018	1	15181	15181		0	0	1		+		9389	8540	6284	6328	12679	12679					0.2523921422928197
KWITLLKR	8	Unmodified	_KWITLLKR_					0	0	0			REV__ENST00000375344.7_1_9:97222409-97222715:+|nuORF	REV__ENST00000375344.7_1_9:97222409-97222715:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.34814453125	2	529.347669	1056.68079	0.31017	0.00016419	2.1258	0.0011253	2.436	0.0012895	529.3479942508549	109.44	0.41723	109.46	109.24	109.66	0.019402					133	46	4	0	0	0	0.53494	1	27960	27960		4.756	0	1	1045200	+		9390	11633	6285	6329	12680	12680					0.15471195744567012
KWKENQADLK	10	Unmodified	_KWKENQADLK_					0	0	0		ENST00000334270.2_1_9:135278078-135282195:-|nuORF	ENST00000334270.2_1_9:135278078-135282195:-|nuORF	ENST00000334270.2_1_9:135278078-135282195:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3408813476562	2	630.340769	1258.66699	0.074556	4.6996E-05	-0.083849	-5.2853E-05	-0.0092925	-5.8574E-06	630.340765158879	46.024	0.41985	46.109	45.885	46.304	0.085617					33	15	3	0	0	0	0.45133	1	8999	8999		4.5289	0	1	117230			9391	6067	6286	6330	12681	12681					0.04799873454794579
KWKQQKKEEKK	11	Unmodified	_KWKQQKKEEKK_					0	0	0		ENSG00000198917|ENST00000361256|SPOUT1	ENSG00000198917|ENST00000361256|SPOUT1	ENSG00000198917|ENST00000361256|SPOUT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.62762451171875	3	496.627942	1486.862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.777	1	95.816	95.316	96.316	0.038872								0	0	0	0.34185	1	24105	24105		0.094841	0	1				9392	5430	6287	6331	12682	12682					0.13804044259791226
KWLLYPTEI	9	Unmodified	_KWLLYPTEI_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.8290405273438	2	581.828975	1161.6434	0.2064	0.00012009	0.17831	0.00010374	0.38471	0.00022383	581.8289747438674	72.007	0.59275	72.007	71.755	72.348	0					62	20	4	0	0	0	0.0045417	2	17000	17000;17044		89.401	51.893	1	2679900			9393	360;6885	6288	6332	12683;12684	12683					0.0690405968828145
KWLLYPTEI	9	Unmodified	_KWLLYPTEI_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.8291625976562	2	581.828975	1161.6434	0.38233	0.00022245	0.075922	4.4174E-05	0.45825	0.00026662	581.8289188293281	71.916	0.61421	71.972	71.76	72.374	0.055931					65	21	4	0	0	0	0.0042703	3	16860	16813;16860;16906		99.755	47.487	1	2483300			9394	360;6885	6288	6332	12685;12686;12687	12686					0.0690405968828145
KWLREETFH	9	Unmodified	_KWLREETFH_					0	0	0			REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10	REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8752746582031	3	415.884012	1244.63021	-0.25662	-0.00010673	3.366	0.0013999	3.1094	0.0012932	415.88461846561813	30.891	0.36271	30.965	30.798	31.161	0.073782					25	17	2	0	0	0	0.3354	1	4424	4424		1.0715	0.3738	1	17359	+		9395	9942	6289	6333	12688	12688					0.01767621628869165
KWMPFKEL	8	Unmodified	_KWMPFKEL_					0	0	0		ENSG00000086827|ENST00000200135|ZW10	ENSG00000086827|ENST00000200135|ZW10	ENSG00000086827|ENST00000200135|ZW10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.260986328125	2	539.791338	1077.56812	-0.12033	-6.4951E-05	1.5607	0.00084246	1.4404	0.00077751	539.7923077292728	26.973	0.38979	26.973	26.766	27.156	0					54	27	3	0	0	0	0.3576	1	3410	3410		2.0598	0.21551	1	36325			9396	983	6290	6334	12689	12689					0.03244178956219912
KWNDECVL	8	Unmodified	_KWNDECVL_					0	0	0			REV__ENST00000491257.1_1_5:131631230-131656634:+|nuORF	REV__ENST00000491257.1_1_5:131631230-131656634:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.29779052734375	2	503.73676	1005.45897	-0.3654	-0.00018407	-1.9565	-0.00098554	-2.3219	-0.0011696	503.7357894533062	40.695	0.25682	40.695	40.53	40.787	0					11	8	2	0	0	0	0.3576	1	7492	7492		3.9444	0	1	17931	+		9397	10845	6291	6335	12690	12690					-0.04354451733934184
KWNDECVL	8	Unmodified	_KWNDECVL_					0	0	0			REV__ENST00000491257.1_1_5:131631230-131656634:+|nuORF	REV__ENST00000491257.1_1_5:131631230-131656634:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	503.73676	1005.45897	-0.19119	-9.6307E-05	-1.225	-0.0006171	-1.4162	-0.0007134	503.7360690937181	40.528	0.14764	40.617	40.569	40.717	0.089645	-0.038976	0.00062763	NaN	7.2892	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22713	+		9398	10845	6291	6335							-0.04354451733934184
KWNKFINL	8	Unmodified	_KWNKFINL_					0	0	0		ENST00000415861.2_1_6:109689555-109689642:-|nuORF	ENST00000415861.2_1_6:109689555-109689642:-|nuORF	ENST00000415861.2_1_6:109689555-109689642:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8087768554688	2	531.808377	1061.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.1	1	103.14	102.64	103.64	0.040916								0	0	0	0.38822	1	26322	26322		2.3027	1.5091	1				9399	6417	6292	6336	12691	12691					0.07386343439452503
KWNLTNDVL	9	Unmodified	_KWNLTNDVL_					0	0	0		ENST00000378098.8_1_7:144150640-144304024:-|nuORF;ENSG00000196511|ENST00000360057|TPK1	ENST00000378098.8_1_7:144150640-144304024:-|nuORF	ENST00000378098.8_1_7:144150640-144304024:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7982177734375	2	551.798206	1101.58186	0.5698	0.00031442	-0.071986	-3.9722E-05	0.49782	0.00027469	551.7977459480418	71.225	0.62679	71.284	71.108	71.735	0.058578					37	22	2	0	0	0	0.15282	1	16634	16634		24.021	0	1	294490			9400	5230	6293	6337	12692	12692					0.035131279889810685
KWNPTAGVAF	10	Unmodified	_KWNPTAGVAF_					0	0	0		ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7881469726562	2	545.787641	1089.56073	0.28259	0.00015423	0.75008	0.00040939	1.0327	0.00056362	545.7879989083234	56.942	1.2102	56.942	56.725	57.935	0					84	43	3	0	0	0	0.001284	2	12454	12454;12504		86.332	48.358	1	1122900			9401	1341	6294	6338	12693;12694	12693					0.019531626801381208
KWNPTAGVAF	10	Unmodified	_KWNPTAGVAF_					0	0	0		ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7881469726562	2	545.787641	1089.56073	0.37085	0.00020241	0.47673	0.00026019	0.84758	0.0004626	545.7877489614426	56.883	0.6902	56.95	56.683	57.373	0.066452					63	25	3	0	0	0	0.022949	1	12299	12299		65.474	45.02	1	1022600			9402	1341	6294	6338	12695	12695					0.019531626801381208
KWNRRFWN	8	Unmodified	_KWNRRFWN_					0	0	0		ENST00000447643.1_1_7:44047097-44047145:-|nuORF	ENST00000447643.1_1_7:44047097-44047145:-|nuORF	ENST00000447643.1_1_7:44047097-44047145:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.8173828125	2	603.817599	1205.62064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.11	1	115.13	114.63	115.63	0.013092								0	0	0	0.38822	1	29270	29270		0.69038	0.16561	1				9403	6551	6295	6339	12696	12696					0.02605898134038398
KWPDRITLL	9	Unmodified	_KWPDRITLL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3399658203125	2	571.340041	1140.66553	0.1342	7.6675E-05	-0.23367	-0.00013351	-0.09947	-5.6831E-05	571.3399733307492	59.338	1.0314	59.338	59.038	60.069	0					78	39	3	0	0	0	0.20966	4	13165	13117;13139;13165;13213		17.443	6.6187	1	408890			9404	2070	6296	6340	12697;12698;12699;12700	12699					0.10082284156692367
KWPDRITLL	9	Unmodified	_KWPDRITLL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.340087890625	2	571.340041	1140.66553	0.16822	9.6109E-05	-0.11539	-6.5925E-05	0.05283	3.0184E-05	571.3398950805591	59.214	0.83772	59.286	59.043	59.88	0.072338					69	33	3	0	0	0	0.19307	4	12958	12958;13005;13061;13107		19.362	6.3195	1	426800			9405	2070	6296	6340	12701;12702;12703;12704	12701					0.10082284156692367
KWRGQSVL	8	Unmodified	_KWRGQSVL_					0	0	0			REV__ENSG00000184571|ENST00000616349|PIWIL3	REV__ENSG00000184571|ENST00000616349|PIWIL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7912902832031	2	487.282526	972.550499	0.20175	9.831E-05	-1.8193	-0.00088651	-1.6175	-0.0007882	487.2817622969246	81.953	0.42542	81.975	81.676	82.102	0.021866					24	14	2	0	0	0	0.48462	1	19851	19851		14.838	1.7958	1	139810	+		9406	10639	6297	6341	12705	12705					0.06312599745569969
KWRQSHDRT	9	Unmodified	_KWRQSHDRT_					0	0	0		ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8668212890625	3	405.21101	1212.6112	0.0066448	2.6926E-06	1.4233	0.00057673	1.4299	0.00057943	405.21218821924475	39.143	0.5613	39.23	38.911	39.472	0.086884					41	22	3	0	0	0	0.25877	1	6923	6923		2.2828	0.63015	1	37237			9407	6832	6298	6342	12706	12706					0.013400850578364043
KWRVLYET	8	Unmodified	_KWRVLYET_					0	0	0			REV__ENSG00000153046|ENST00000397588|CDYL	REV__ENSG00000153046|ENST00000397588|CDYL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.80224609375	2	547.803291	1093.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.589	1	41.678	41.178	42.178	0.089764								0	0	0	0.38822	1	7644	7644		2.0598	0	1		+		9408	9685	6299	6343	12707	12707					0.04897735714234841
KWVMVPMM	8	Unmodified	_KWVMVPMM_					0	0	0		ENSG00000196136|ENST00000393078|SERPINA3	ENSG00000196136|ENST00000393078|SERPINA3	ENSG00000196136|ENST00000393078|SERPINA3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.25360107421875	2	511.25522	1020.49589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.29	1	16.368	15.868	16.868	0.077806								0	0	0	0.38822	1	636	636		0.79363	0.10326	1				9409	5206	6300	6344	12708	12708					-0.013541947133603571
KWVRNLRP	8	Unmodified	_KWVRNLRP_					0	0	0			REV__ENST00000446758.5_1_2:179974628-179981501:-|nuORF	REV__ENST00000446758.5_1_2:179974628-179981501:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.82421875	2	534.824892	1067.63523	0.12855	6.875E-05	-1.0841	-0.00057978	-0.95551	-0.00051103	534.8241681632962	29.27	0.35085	29.348	29.197	29.548	0.078289					44	20	3	0	0	0	0.54097	1	3993	3993		0.69038	0	1	58579	+		9410	10726	6301	6345	12709	12709					0.10411970282166294
KWWKWLRRR	9	Unmodified	_KWWKWLRRR_					0	0	0			REV__ENST00000461642.2_1_20:25470551-25477423:-|nuORF	REV__ENST00000461642.2_1_20:25470551-25477423:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.61846923828125	3	472.282552	1413.82583	0.19807	9.3547E-05	1.5802	0.00074629	1.7783	0.00083984	472.283247857646	94.076	0.82183	94.076	94.015	94.837	0					79	36	3	0	0	0	0.34372	1	23951	23951		0.96228	0.45632	1	139200	+		9411	11963	6302	6346	12710	12710					0.1354667666421392
KWYDRRDYVF	10	Unmodified	_KWYDRRDYVF_					0	0	0		nc|ENSG00000110958|Q15185-2|PTGES3;nc|ENSG00000110958|Q15185-3|PTGES3;nc|ENSG00000110958|Q15185-4|PTGES3;ENSG00000110958|ENST00000262033|PTGES3;ENST00000537473.2_1_12:57059942-57081218:-|nuORF	nc|ENSG00000110958|Q15185-2|PTGES3	nc|ENSG00000110958|Q15185-2|PTGES3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.57672119140625	3	483.242088	1446.70443	0.17184	8.304E-05	0.035087	1.6956E-05	0.20693	9.9996E-05	483.5762610753968	47.354	0.57249	47.437	47.244	47.816	0.083096					46	22	4	0	0	0	0.41978	1	9372	9372		9.7643	4.7167	1	90119			9412	1688	6303	6347	12711	12711					-0.0010503527958007908
KWYLLGRFF	9	Unmodified	_KWYLLGRFF_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.5438232421875	3	410.565843	1228.6757	0.11677	4.794E-05	1.2903	0.00052974	1.407	0.00057768	410.56640555202836	33.129	0.21191	33.129	33.036	33.248	0					10	8	2	0	0	0	0.25964	1	5220	5220		1.0715	0.29493	1	9923.5	+		9413	11088	6304	6348	12712	12712					0.07050891881908683
KYAAHPGA	8	Unmodified	_KYAAHPGA_					0	0	0		ENST00000303375.9_1_17:60770648-60770867:+|nuORF	ENST00000303375.9_1_17:60770648-60770867:+|nuORF	ENST00000303375.9_1_17:60770648-60770867:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.7138366699219	2	407.713945	813.413337	-0.25387	-0.00010351	1.1714	0.00047761	0.91757	0.00037411	407.7139582339138	32.086	0.71354	32.16	31.979	32.692	0.07378					68	36	2	0	0	0	0.53257	1	4790	4790		6.3541	0.59368	1	117890			9414	5981	6305	6349	12713	12713					-0.0008330913401550788
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.2193298339844	3	406.219283	1215.63602	-0.31525	-0.00012806	0.36055	0.00014646	0.045303	1.8403E-05	406.2193701324901	28.288	0.57205	28.37	28.199	28.771	0.082134					84	32	4	0	0	0	0.34796	1	3664	3664		15.538	6.2947	1	217550			9415	1811	6306	6350	12714	12714					0.03682720140568563
KYAELKDRL	9	Unmodified	_KYAELKDRL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3270874023438	2	568.327131	1134.63971	-0.13025	-7.4023E-05	0.19995	0.00011364	0.069702	3.9614E-05	568.3270906231315	29.973	0.50382	30.048	29.882	30.386	0.075403					74	31	3	0	0	0	0.24914	1	4167	4167		12.873	6.6668	1	61428			9416	5252	6307	6351	12715	12715					0.07777389914417654
KYAHMINGF	9	Unmodified	_KYAHMINGF_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7679443359375	2	540.768394	1079.52224	-0.097725	-5.2846E-05	-1.3926	-0.00075309	-1.4904	-0.00080594	540.768222167602	40.093	0.50853	40.093	39.866	40.375	0					31	17	3	0	0	0	0.30005	1	7333	7333		6.7232	2.7788	1	46072			9417	516	6308	6352	12716	12716					-0.014344662260555197
KYAHMINGF	9	Unmodified	_KYAHMINGF_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7684936523438	2	540.768394	1079.52224	0.11967	6.4715E-05	-1.1241	-0.00060785	-1.0044	-0.00054314	540.7682653408812	39.957	0.30579	40.045	39.882	40.188	0.088562					26	11	3	0	0	0	0.30005	1	7152	7152		6.7232	3.4419	1	51107			9418	516	6308	6352	12717	12717					-0.014344662260555197
KYALLLQEL	9	Unmodified	_KYALLLQEL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.8291015625	2	545.828975	1089.6434	0.52865	0.00028856	0.090489	4.9392E-05	0.61914	0.00033795	545.828924527677	69.397	0.87661	69.397	69.191	70.067	0					75	30	3	0	0	0	0.00066972	1	16214	16214		128.93	28.224	1	1845200			9419	5209	6309	6353	12718	12718					0.10216059688264068
KYALLLQEL	9	Unmodified	_KYALLLQEL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.8292846679688	2	545.828975	1089.6434	0.24705	0.00013484	0.39607	0.00021619	0.64312	0.00035103	545.8290601442563	69.341	0.84711	69.404	69.168	70.015	0.062126					77	31	3	0	0	0	0.0043442	1	16021	16021		96.936	15.02	1	1819400			9420	5209	6309	6353	12719	12719					0.10216059688264068
KYAMMFAEL	9	2 Oxidation (M)	_KYAM(Oxidation (M))M(Oxidation (M))FAEL_		KYAM(1)M(1)FAEL		KYAM(54)M(54)FAEL	0	0	2		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2616577148438	2	568.261753	1134.50895	0.11998	6.8178E-05	-0.52091	-0.00029601	-0.40093	-0.00022783	568.2617027691676	51.136	1.8092	51.136	50.234	52.043	0					160	62	4	0	0	0	0.026209	4	10740	10643;10690;10740;10785		53.833	32.373	1	537700			9421	982	6310	6354	12720;12721;12722;12723	12722		56;57			-0.05292085120277079
KYAMMFAEL	9	2 Oxidation (M)	_KYAM(Oxidation (M))M(Oxidation (M))FAEL_		KYAM(1)M(1)FAEL		KYAM(54)M(54)FAEL	0	0	2		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2617797851562	2	568.261753	1134.50895	0.23767	0.00013506	-0.30809	-0.00017507	-0.070422	-4.0018E-05	568.2616440492328	51.119	2.5263	51.189	49.651	52.178	0.069874					182	92	3	0	0	0	0.026209	2	10484	10484;10531		53.833	29.812	1	457220			9422	982	6310	6354	12724;12725	12724		56;57			-0.05292085120277079
KYAMMFAEL	9	Oxidation (M)	_KYAMM(Oxidation (M))FAEL_		KYAM(0.1)M(0.9)FAEL		KYAM(-9.6)M(9.6)FAEL	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2643432617188	2	560.264296	1118.51404	0.48869	0.0002738	-0.51954	-0.00029108	-0.030849	-1.7284E-05	560.2640729210751	60.738	1.5225	60.738	59.925	61.447	0					144	54	4	0	0	0	0.0050339	4	13581	13536;13581;13626;13679		82.529	54.901	2	984760			9423	982	6310	6355	12726;12727;12728;12729	12727		56;57			-0.040477812576909855
KYAMMFAEL	9	Oxidation (M)	_KYAM(Oxidation (M))MFAEL_		KYAM(0.5)M(0.5)FAEL		KYAM(0)M(0)FAEL	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2645263671875	2	560.264296	1118.51404	0.35595	0.00019942	-0.21016	-0.00011774	0.14579	8.1681E-05	560.2642140230749	60.614	1.5176	60.688	59.968	61.486	0.073421					133	54	4	0	0	0	0.012041	4	13415	13364;13415;13465;13519		63.961	42.424	2	773890			9424	982	6310	6355	12730;12731;12732;12733	12731		56;57			-0.040477812576909855
KYAPRPIFI	9	Unmodified	_KYAPRPIFI_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.76904296875	2	552.831852	1103.64915	0.54749	0.00030267	-0.62064	-0.00034311	-0.073149	-4.0439E-05	552.8314412361544	47.478	0.44077	47.478	47.231	47.672	0					27	14	3	0	0	0	0.25281	1	9585	9585		6.7232	2.7788	1	85044			9425	1981	6311	6356	12734	12734					0.10147202990583537
KYAPRPIFI	9	Unmodified	_KYAPRPIFI_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.831852	1103.64915	0.61582	0.00034044	0.0018751	1.0366E-06	0.61769	0.00034148	552.8316566008378	47.361	0.44036	47.445	47.199	47.639	0.083096	-0.016513	0.00023018	NaN	6.7232	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79332			9426	1981	6311	6356							0.10147202990583537
KYAPSGFYI	9	Unmodified	_KYAPSGFYI_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2714233398438	2	523.271293	1044.52803	0.46615	0.00024392	0.34434	0.00018018	0.81049	0.00042411	523.2713239812806	55.542	0.48559	55.542	55.38	55.866	0					36	16	3	0	0	0	0.081383	1	12012	12012		36.506	25.682	1	258290			9427	768	6312	6357	12735	12735					0.007549555572722966
KYAPSGFYI	9	Unmodified	_KYAPSGFYI_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2720947265625	2	523.271293	1044.52803	0.31651	0.00016562	0.75125	0.00039311	1.0678	0.00055873	523.2714049701785	55.553	0.44127	55.618	55.374	55.815	0.065128					35	15	4	0	0	0	0.083124	1	11861	11861		36.127	22.221	1	201730			9428	768	6312	6357	12736	12736					0.007549555572722966
KYAQWEESL	9	Unmodified	_KYAQWEESL_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.27880859375	2	577.279846	1152.54514	0.31321	0.00018081	-0.55574	-0.00032082	-0.24253	-0.00014001	577.2794554219682	50.091	0.43562	50.164	49.979	50.414	0.07312					24	14	2	0	0	0	0.023873	1	10199	10199		55.503	30.512	1	120920			9429	1252	6313	6358	12737	12737					-0.025031686275724496
KYAQWEESL	9	Unmodified	_KYAQWEESL_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	577.279846	1152.54514	0.2203	0.00012718	-0.8818	-0.00050905	-0.6615	-0.00038187	577.2793879972564	50.176	0.3796	50.176	49.996	50.376	0	0.0058038	-0.00014073	NaN	55.503	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151380			9430	1252	6313	6358							-0.025031686275724496
KYATFALQLK	10	Unmodified	_KYATFALQLK_					0	0	0			REV__nc|nan|Q9HD87|C6orf50	REV__nc|nan|Q9HD87|C6orf50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.8300170898438	2	591.847699	1181.68084	0.46268	0.00027383	-0.92304	-0.0005463	-0.46036	-0.00027246	591.8470112988067	60.736	0.6307	60.736	60.587	61.218	0					38	22	3	0	0	0	0.43503	1	13662	13662		7.609	0.88579	1	255350	+		9431	12930	6314	6359	12738	12738					0.09727150953881392
KYATYSPLCY	10	Unmodified	_KYATYSPLCY_					0	0	0			REV__ENST00000547317.5_1_12:62748811-62768182:+|nuORF	REV__ENST00000547317.5_1_12:62748811-62768182:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1702880859375	3	403.526725	1207.55835	0.58713	0.00023692	0.075142	3.0322E-05	0.66227	0.00026724	403.52667192668076	75.792	0.49701	75.792	75.352	75.849	0					41	22	2	0	0	0	0.31731	1	18089	18089		3.3196	3.3196	1	4427000	+		9432	9213	6315	6360	12739	12739					-0.03713053839828717
KYAWVLDKL	9	Unmodified	_KYAWVLDKL_					0	0	0		ENST00000434005.1_1_7:22551057-22551540:-|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENST00000434005.1_1_7:22551057-22551540:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.32958984375	2	568.329142	1134.64373	0.1993	0.00011327	0.34299	0.00019493	0.54229	0.0003082	568.3291564616111	58.124	0.61837	58.194	57.943	58.561	0.070477					35	22	3	0	0	0	0.0039507	1	12673	12673		103.82	51.555	1	399020			9433	1244	6316	6361	12740	12740					0.08179479408113366
KYAWVLDKL	9	Unmodified	_KYAWVLDKL_					0	0	0		ENST00000434005.1_1_7:22551057-22551540:-|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000434005.1_1_7:22551057-22551540:-|nuORF	ENST00000434005.1_1_7:22551057-22551540:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	568.329142	1134.64373	0.15662	8.9011E-05	0.49882	0.0002835	0.65544	0.00037251	568.3294256140205	58.158	0.21786	58.158	57.999	58.217	0	-0.018131	0.00011729	NaN	103.82	20	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352790			9434	1244	6316	6361							0.08179479408113366
KYCTVVAYPT	10	Unmodified	_KYCTVVAYPT_					0	0	0		ENST00000473813.1_1_21:40582792-40590527:-|nuORF;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	ENST00000473813.1_1_21:40582792-40590527:-|nuORF	ENST00000473813.1_1_21:40582792-40590527:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7568359375	2	572.788992	1143.56343	0.27902	0.00015982	0.19142	0.00010964	0.47044	0.00026946	572.7884523161975	57.868	0.44996	57.936	57.779	58.229	0.068375					20	17	2	0	0	0	0.45794	1	12653	12653		3.2813	0.28607	1	56757			9435	5035	6317	6362	12741	12741					-0.0026074997724663262
KYDDNVKAYF	10	Unmodified	_KYDDNVKAYF_					0	0	0		ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.8060913085938	2	631.806228	1261.5979	-0.36384	-0.00022988	0.0078587	4.9652E-06	-0.35598	-0.00022491	631.8062431125971	45.429	0.34787	45.429	45.238	45.586	0					14	11	2	0	0	0	0.46208	1	8948	8948		2.4985	1.0166	1	65606			9436	1677	6318	6363	12742	12742					-0.022432105647794742
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.79833984375	2	602.797872	1203.58119	0.90015	0.00054261	-0.16063	-9.6829E-05	0.73951	0.00044578	602.7977132038949	66.673	1.501	66.673	66.168	67.669	0					223	57	5	0	0	0	1.5265E-05	11	15388	15337;15343;15388;15434;15480;15488;15522;15567;15606;15652;15698		143.91	64.313	1	13694000			9437	487	6319	6364	12743;12744;12745;12746;12747;12748;12749;12750;12751;12752;12753	12745					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.7861328125	2	602.797872	1203.58119	0.69109	0.00041659	2.0413	0.0012305	2.7324	0.0016471	603.3005236788068	70.228	0.56468	70.228	69.991	70.555	0					31	21	2	0	0	0	0.27266	1	16459	16459		10.151	0.076642	1	205170			9438	487	6319	6364	12754	12754					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8240966796875	2	602.797872	1203.58119	0.57591	0.00034716	-0.47103	-0.00028393	0.10488	6.3224E-05	602.7970488862637	67.848	1.4633	67.848	67.669	69.132	0					182	54	5	0	0	0	0.20294	1	15863	15863		24.991	8.8419	1	343320			9439	487	6319	6364	12755	12755					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.7984619140625	2	602.797872	1203.58119	0.85799	0.00051719	-0.19138	-0.00011536	0.66661	0.00040183	602.7976839055336	66.627	2.6925	66.693	66.278	68.971	0.065071					260	99	5	0	0	0	0.00066972	10	15198	15198;15235;15284;15326;15368;15408;15453;15495;15541;15613		128.93	64.972	1	16744000			9440	487	6319	6364	12756;12757;12758;12759;12760;12761;12762;12763;12764;12765	12756					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.7969360351562	2	602.797872	1203.58119	0.56599	0.00034118	0.64984	0.00039172	1.2158	0.0007329	603.2998396714796	69.39	1.6015	69.453	69.233	70.835	0.062126					84	63	2	0	0	0	0.2359	1	16111	16111		14.405	6.7964	1	217350			9441	487	6319	6364	12766	12766					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.787353515625	2	602.797872	1203.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.416	1	70.477	69.977	70.977	0.060562								0	0	0	0.23955	1	16379	16379		11.495	1.4208	1				9442	487	6319	6364	12767	12767					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	602.797872	1203.58119	0.68513	0.00041299	0.53495	0.00032246	1.2201	0.00073546	603.2994984612942	69.485	0.85368	69.485	69.165	70.018	0	0.016026	-9.6102E-05	NaN	14.405	67	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224060			9443	487	6319	6364							-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	602.797872	1203.58119	0.56599	0.00034118	0.64984	0.00039172	1.2158	0.0007329	603.2998396714796	69.39	1.6015	69.453	69.233	70.835	0.062126	-0.016026	4.2412E-05	NaN	14.405	84	63	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217350			9444	487	6319	6364							-0.012457114507014921
KYDFRKHF	8	Unmodified	_KYDFRKHF_					0	0	0			REV__ENSG00000138109|ENST00000260682|CYP2C9	REV__ENSG00000138109|ENST00000260682|CYP2C9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8001098632812	2	570.801083	1139.58761	-0.39767	-0.00022699	-1.1476	-0.00065503	-1.5452	-0.00088202	570.8004336129897	41.438	0.78805	41.528	41.153	41.941	0.089767					59	30	3	0	0	0	0.53279	1	7593	7593		6.2058	0.9089	1	110270	+		9445	9303	6320	6365	12768	12768					0.023402712913139112
KYDPNVYSI	9	Unmodified	_KYDPNVYSI_					0	0	0		nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-2|ITGAV	nc|ENSG00000138448|P06756-2|ITGAV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7771606445312	2	549.776939	1097.53933	0.38307	0.0002106	0.20901	0.00011491	0.59208	0.00032551	549.776558253166	48.033	0.39885	48.033	47.852	48.251	0					27	13	3	0	0	0	0.11198	3	9713	9713;9743;9755		29.841	11.694	1	118210			9446	2912	6321	6366	12769;12770;12771	12769					-0.005542671392504417
KYDPNVYSI	9	Unmodified	_KYDPNVYSI_					0	0	0		nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-2|ITGAV	nc|ENSG00000138448|P06756-2|ITGAV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7640991210938	2	549.776939	1097.53933	0.62584	0.00034407	-0.035069	-1.928E-05	0.59077	0.00032479	549.7767145963725	47.913	0.37183	47.993	47.813	48.185	0.080029					23	13	2	0	0	0	0.15482	2	9579	9548;9579		23.79	7.1848	1	152010			9447	2912	6321	6366	12772;12773	12773					-0.005542671392504417
KYDTDFYIL	9	Unmodified	_KYDTDFYIL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1;ENST00000489964.5_1_2:136664888-136672125:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2927856445312	2	589.292422	1176.57029	0.62155	0.00036628	0.52689	0.00031049	1.1484	0.00067677	589.2923428908391	69.095	1.2117	69.095	68.749	69.961	0					77	43	3	0	0	0	0.15482	1	16148	16148		23.79	5.6548	1	1220500			9448	1926	6322	6367	12774	12774					-0.01093113825004366
KYDTDFYIL	9	Unmodified	_KYDTDFYIL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1;ENST00000489964.5_1_2:136664888-136672125:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.29248046875	2	589.292422	1176.57029	0.41835	0.00024653	0.85272	0.0005025	1.2711	0.00074903	589.2925109961877	69.011	0.65627	69.074	68.793	69.449	0.062126					59	24	4	0	0	0	0.13341	1	15941	15941		26.268	1.5943	1	1391300			9449	1926	6322	6367	12775	12775					-0.01093113825004366
KYDVLFALF	9	Unmodified	_KYDVLFALF_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3107299804688	2	558.310418	1114.60628	0.57894	0.00032323	-0.16776	-9.366E-05	0.41118	0.00022957	558.3103810525056	87.78	2.3861	87.78	87.547	89.933	0					229	92	6	0	0	0	0.0043658	13	21835	21791;21835;21879;21922;21968;22018;22066;22107;22162;22218;22264;22316;22380		96.111	41.337	1	11777000			9450	7363	6323	6368	12776;12777;12778;12779;12780;12781;12782;12783;12784;12785;12786;12787;12788	12777					0.05356388142513424
KYDVLFALF	9	Unmodified	_KYDVLFALF_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.310546875	2	558.310418	1114.60628	0.46872	0.00026169	-0.05725	-3.1963E-05	0.41147	0.00022973	558.3103484099859	87.731	2.0181	87.761	87.582	89.6	0.030037					221	77	5	0	0	0	0.012041	11	21704	21620;21660;21704;21749;21800;21926;21976;22035;22084;22150;22208		63.961	31.655	1	6563200			9451	7363	6323	6368	12789;12790;12791;12792;12793;12794;12795;12796;12797;12798;12799	12791					0.05356388142513424
KYDVLFALF	9	Unmodified	_KYDVLFALF_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3104858398438	2	558.310418	1114.60628	0.34164	0.00019074	0.09254	5.1666E-05	0.43418	0.00024241	558.310406797269	89.746	0.32712	89.78	89.604	89.932	0.034058					17	12	2	0	0	0	0.16392	1	22266	22266		22.736	0.98964	1	86717			9452	7363	6323	6368	12800	12800					0.05356388142513424
KYEAIQLTF	9	Unmodified	_KYEAIQLTF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3;ENST00000424783.1_1_2:99718519-99719212:+|nuORF	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2681274414062	2	556.802957	1111.59136	0.58322	0.00032474	-0.86576	-0.00048206	-0.28253	-0.00015732	556.8025371254475	62.897	0.57175	62.897	62.66	63.232	0					35	22	3	0	0	0	0.15281	1	14244	14244		37.075	7.2341	1	330580			9453	1580	6324	6369	12801	12801					0.04002896274505474
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2902221679688	2	572.289682	1142.56481	0.49293	0.0002821	0.0028899	1.6538E-06	0.49582	0.00028375	572.2898637343219	70.494	2.383	70.494	69.818	72.202	0					246	85	6	0	0	0	0.0016252	5	16572	16489;16530;16572;16617;16764		118.07	59.39	1	15315000			9454	1467	6325	6370	12802;12803;12804;12805;12806	12804					-0.0007679261682369543
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.2901000976562	2	572.289682	1142.56481	0.51444	0.00029441	0.070842	4.0542E-05	0.58528	0.00033495	572.2897594941421	70.372	1.7135	70.433	70.104	71.817	0.060562					235	65	6	0	0	0	0.0016252	6	16341	16298;16341;16384;16428;16475;16514		118.07	59.39	1	11704000			9455	1467	6325	6370	12807;12808;12809;12810;12811;12812	12808					-0.0007679261682369543
KYEFCCVCLY	10	Unmodified	_KYEFCCVCLY_					0	0	0			REV__DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	REV__DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.769287109375	2	635.768888	1269.52322	0.11191	7.1149E-05	-0.35057	-0.00022288	-0.23866	-0.00015173	636.2702904251887	87.177	0.32439	87.177	87.024	87.348	0					18	12	2	0	0	0	0.38104	1	21626	21626		13.906	3.7555	1	103110	+		9456	7898	6326	6371	12813	12813					-0.10075755963657684
KYEFCCVCLY	10	Unmodified	_KYEFCCVCLY_					0	0	0			REV__DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	REV__DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.7689819335938	2	635.768888	1269.52322	0.12807	8.1425E-05	-0.55368	-0.00035201	-0.42561	-0.00027059	635.7686687647681	87.028	0.31037	87.055	86.999	87.309	0.027573					20	12	2	0	0	0	0.38104	1	21475	21475		13.906	3.1065	1	158450	+		9457	7898	6326	6371	12814	12814					-0.10075755963657684
KYEFCCVCLY	10	Unmodified	_KYEFCCVCLY_					0	0	0			REV__DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	REV__DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	635.768888	1269.52322	0.12807	8.1425E-05	-0.55368	-0.00035201	-0.42561	-0.00027059	635.7686687647681	87.028	0.31037	87.055	86.999	87.309	0.027573	-0.060786	-0.00012518	NaN	13.906	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158450	+		9458	7898	6326	6371							-0.10075755963657684
KYEFFNKI	8	Unmodified	_KYEFFNKI_					0	0	0			REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1	REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8909301757812	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.242	1	63.242	62.742	63.742	0								0	0	0	0.38822	1	14348	14348		3.9444	0.3479	1		+		9459	13088	6327	6372	12815	12815					0.0299493096565584
KYEFTVYQQ	9	Unmodified	_KYEFTVYQQ_					0	0	0		ENST00000381103.6_1_5:61602143-61604167:+|nuORF	ENST00000381103.6_1_5:61602143-61604167:+|nuORF	ENST00000381103.6_1_5:61602143-61604167:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8422241210938	2	603.295496	1204.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.855	1	54.855	54.355	55.355	0								0	0	0	0.27935	1	11793	11793		3.2813	0.54611	1				9460	6291	6328	6373	12816	12816					-0.017665955934717203
KYEGVCGLYKG	11	Unmodified	_KYEGVCGLYKG_					0	0	0		SLC25A32|p.R180C|1|0.1|ENSG00000164933|chr8:103403178-103403178|G/A|missense_variant	SLC25A32|p.R180C|1|0.1|ENSG00000164933|chr8:103403178-103403178|G/A|missense_variant	SLC25A32|p.R180C|1|0.1|ENSG00000164933|chr8:103403178-103403178|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.2059631347656	3	406.205875	1215.59579	-0.30427	-0.0001236	-2.1006	-0.00085328	-2.4049	-0.00097687	406.2051305667754	27.12	0.40325	27.207	27.029	27.432	0.0867					68	27	3	0	0	0	0.40796	1	3314	3314		1.0136	0.051299	1	72166			9461	13365	6329	6374	12817	12817					-0.0033796257423546194
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2825927734375	2	593.282389	1184.55022	0.35575	0.00021106	-0.015947	-9.461E-06	0.33981	0.0002016	593.2823836680923	57.885	0.61998	57.885	57.597	58.217	0					73	21	4	0	0	0	7.5574E-18	3	12690	12690;12739;12786		208.15	164.29	1	2402000			9462	2852	6330	6375	12818;12819;12820	12818					-0.034668647649596096
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2825317382812	2	593.282389	1184.55022	0.28155	0.00016704	0.2278	0.00013515	0.50934	0.00030219	593.2824572265024	57.791	0.55413	57.86	57.606	58.16	0.068375					68	20	4	0	0	0	7.5574E-18	1	12566	12566		208.15	153.37	1	2580900			9463	2852	6330	6375	12821	12821					-0.034668647649596096
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.1574096679688	2	593.282389	1184.55022	0.20304	0.00012046	0.36501	0.00021656	0.56805	0.00033702	593.2827858881403	58.197	0.66831	58.268	58.136	58.804	0.070473					31	23	2	0	0	0	0.25376	1	12709	12709		6.2058	0	1	191410			9464	2852	6330	6375	12822	12822					-0.034668647649596096
KYEQGYQKS	9	Unmodified	_KYEQGYQKS_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7754516601562	2	565.77747	1129.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.482	1	35.482	34.982	35.982	0								0	0	0	0.28073	1	5931	5931		2.9952	0.41776	1				9465	2924	6331	6376	12823	12823					-0.019200527703333137
KYEQGYQKS	9	Unmodified	_KYEQGYQKS_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7770385742188	2	565.77747	1129.54039	0.10011	5.6641E-05	-0.74616	-0.00042216	-0.64604	-0.00036552	565.7765194510976	35.407	0.27348	35.486	35.322	35.596	0.078831					19	10	2	0	0	0	0.32831	1	5792	5792		2.9952	0.41776	1	28718			9466	2924	6331	6376	12824	12824					-0.019200527703333137
KYEREMDEL	9	Unmodified	_KYEREMDEL_					0	0	0			REV__tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1	REV__tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.8587646484375	3	404.857023	1211.54924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.643	1	71.643	71.143	72.143	0								0	0	0	0.27782	1	16906	16906		2.086	0.63089	1		+		9467	13275	6332	6377	12825	12825					-0.04807447196162684
KYERIFTLL	9	Unmodified	_KYERIFTLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.8299560546875	2	591.847699	1181.68084	0.46268	0.00027383	-0.92304	-0.0005463	-0.46036	-0.00027246	591.8470112988067	60.736	0.6307	60.736	60.587	61.218	0					38	22	3	0	0	0	0.19307	1	13611	13611		19.362	2.249	1	255350			9468	1329	6333	6378	12826	12826					0.09727150953904129
KYERIFTLL	9	Unmodified	_KYERIFTLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.8302001953125	2	591.847699	1181.68084	0.29701	0.00017579	-0.29855	-0.0001767	-0.0015422	-9.1274E-07	591.8474178222974	60.664	0.50225	60.738	60.578	61.081	0.073421					21	17	2	0	0	0	0.18254	2	13458	13409;13458		20.581	5.3325	1	178340			9469	1329	6333	6378	12827;12828	12828					0.09727150953904129
KYFAQALKL	9	Unmodified	_KYFAQALKL_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.3238525390625	2	541.32386	1080.63317	0.27772	0.00015034	-0.22605	-0.00012237	0.051672	2.7971E-05	541.3236388789892	48.291	0.70676	48.291	48.094	48.801	0					50	23	3	0	0	0	0.0072241	1	9789	9789		75.761	39.634	1	389360			9470	1412	6334	6379	12829	12829					0.09607496753687883
KYFAQALKL	9	Unmodified	_KYFAQALKL_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.32373046875	2	541.32386	1080.63317	0.49038	0.00026546	-0.24993	-0.00013529	0.24045	0.00013016	541.3236386234582	48.226	0.63591	48.306	48.087	48.722	0.080032					49	21	3	0	0	0	0.0040275	1	9627	9627		103.35	53.421	1	439240			9471	1412	6334	6379	12830	12830					0.09607496753687883
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2631225585938	2	551.264196	1100.51384	-0.50222	-0.00027686	-0.72855	-0.00040162	-1.2308	-0.00067848	551.2635704159283	41.769	0.58744	41.769	41.575	42.162	0					84	21	5	0	0	0	0.098463	1	7867	7867		32.786	7.7947	1	377920			9472	7453	6335	6380	12831	12831					-0.03239741661673179
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.263427734375	2	551.264196	1100.51384	-0.24783	-0.00013662	-0.45185	-0.00024909	-0.69969	-0.00038571	551.2636359274958	41.707	0.58928	41.796	41.596	42.186	0.089764					76	23	5	0	0	0	0.005983	1	7700	7700		79.596	37.641	1	333710			9473	7453	6335	6380	12832	12832					-0.03239741661673179
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.2159423828125	3	411.216768	1230.62847	0.40251	0.00016552	-0.71179	-0.0002927	-0.30928	-0.00012718	411.21638232614384	48.466	2.0102	48.466	48.224	50.234	0					171	70	6	0	0	0	0.068958	1	9840	9840		39.213	19.851	1	2732800			9474	3339	6336	6381	12833	12833					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.3216552734375	2	616.321514	1230.62847	-0.15535	-9.5747E-05	0.41648	0.00025668	0.26112	0.00016094	616.3217338213084	48.338	0.86026	48.418	48.219	49.079	0.080032					80	29	5	0	0	0	0.0041588	3	9702	9650;9702;9751		110.79	57.389	1	962040			9475	3339	6336	6381	12834;12835;12836	12835					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.2159118652344	3	411.216768	1230.62847	0.10469	4.3049E-05	-0.51133	-0.00021027	-0.40664	-0.00016722	411.2163849656203	48.37	1.8853	48.45	48.219	50.104	0.080029					150	66	5	0	0	0	0.037699	1	9675	9675		46.022	21.031	1	2542600			9476	3339	6336	6381	12837	12837					0.02238567820290882
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.3007202148438	2	541.30005	1080.58555	0.8029	0.00043461	0.07969	4.3136E-05	0.88259	0.00047775	541.2999790711721	66.589	1.0841	66.589	66.248	67.332	0					114	41	4	0	0	0	0.0068798	2	15389	15342;15389		76.825	32.966	1	1973500			9477	2553	6337	6382	12838;12839	12839					0.04847797762840855
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.30029296875	2	541.30005	1080.58555	0.7532	0.00040771	0.1607	8.6987E-05	0.9139	0.00049469	541.300017139735	66.524	1.1317	66.589	66.308	67.439	0.065071					109	41	4	0	0	0	0.010553	2	15182	15182;15225		65.474	29.347	1	1780900			9478	2553	6337	6382	12840;12841	12840					0.04847797762840855
KYFEVPSVLL	10	Unmodified	_KYFEVPSVLL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.84228515625	2	597.842082	1193.66961	0.40333	0.00024113	0.21746	0.00013	0.62079	0.00037113	597.8421624654194	75.172	0.78171	75.172	74.91	75.692	0					88	30	4	0	0	0	5.8794E-05	3	17997	17949;17997;18046		103.82	41.251	1	3471300			9479	2553	6338	6383	12842;12843;12844	12843					0.08052328859753288
KYFEVPSVLL	10	Unmodified	_KYFEVPSVLL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8424072265625	2	597.842082	1193.66961	0.2636	0.00015759	0.25058	0.00014981	0.51418	0.0003074	597.8421667321041	75.086	0.65261	75.13	74.943	75.595	0.044037					78	23	4	0	0	0	5.8794E-05	3	17824	17785;17824;17870		103.82	41.251	1	4564400			9480	2553	6338	6383	12845;12846;12847	12846					0.08052328859753288
KYFEVPVFI	9	Unmodified	_KYFEVPVFI_					0	0	0		ENST00000556312.5_1_14:58666935-58675849:+|nuORF	ENST00000556312.5_1_14:58666935-58675849:+|nuORF	ENST00000556312.5_1_14:58666935-58675849:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.307861328125	2	571.318243	1140.62193	0.44178	0.0002524	0.41683	0.00023814	0.85861	0.00049054	571.3185039670317	78.117	0.59351	78.147	77.971	78.564	0.030159					46	20	3	0	0	0	0.16392	1	18781	18781		22.736	3.4793	1	419480			9481	7128	6339	6384	12848	12848					0.05724674659563789
KYFGDPFEEL	10	Unmodified	_KYFGDPFEEL_					0	0	0			REV__nc|ENSG00000136925|Q5T7W7-2|TSTD2	REV__nc|ENSG00000136925|Q5T7W7-2|TSTD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.792724609375	2	622.795329	1243.5761	0.011993	7.4691E-06	-3.2637	-0.0020326	-3.2517	-0.0020251	622.7932951704383	58.804	0.27812	58.875	58.691	58.969	0.070477					15	9	2	0	0	0	0.37637	1	12858	12858		14.405	0.49933	1	123990	+		9482	9259	6340	6385	12849	12849					-0.03594015313319687
KYFGEKIGLYF	11	Unmodified	_KYFGEKIGLYF_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.5798034667969	3	455.579818	1363.71762	0.51278	0.00023361	-0.20753	-9.4544E-05	0.30526	0.00013907	455.5796045703903	62.526	0.65718	62.526	62.341	62.999	0					55	23	4	0	0	0	0.40316	1	14163	14163		3.5927	0.52041	1	257610			9483	2539	6341	6386	12850	12850					0.05031402779786731
KYFGEKIGLYF	11	Unmodified	_KYFGEKIGLYF_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.66033935546875	3	455.579818	1363.71762	0.25991	0.00011841	0.023266	1.0599E-05	0.28318	0.00012901	455.57970642452227	62.456	0.54853	62.529	62.335	62.884	0.072701					47	18	4	0	0	0	0.31095	1	14034	14034		1.9275	0.47239	1	312060			9484	2539	6341	6386	12851	12851					0.05031402779786731
KYFGGVLEYF	10	Unmodified	_KYFGGVLEYF_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.810546875	2	611.810782	1221.60701	0.3197	0.00019559	-0.70796	-0.00043314	-0.38826	-0.00023754	611.8101737736675	75.08	0.75206	75.124	74.867	75.619	0.044044					58	27	3	0	0	0	0.15743	1	17827	17827		38.615	18.2	1	932580			9485	3995	6342	6387	12852	12852					0.005071827915571703
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000152601|Q9NR56|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000139793|Q5VZF2|MBNL2;nc|ENSG00000152601|Q9NR56-2|MBNL1;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000076770|Q9NUK0-4|MBNL3;ENSG00000139793|ENST00000679496|MBNL2	nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000152601|Q9NR56-7|MBNL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2984619140625	2	555.298176	1108.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.583	1	33.583	33.083	34.083	0								0	0	0	0.27427	1	5361	5361		4.3292	0	1				9486	7531	6343	6388	12853	12853					0.031851727796492924
KYFLFFLL	8	Unmodified	_KYFLFFLL_					0	0	0		ENST00000583778.1_1_17:80406944-80408606:-|nuORF;ENST00000585044.5_1_17:80406944-80407265:-|nuORF	ENST00000583778.1_1_17:80406944-80408606:-|nuORF	ENST00000583778.1_1_17:80406944-80408606:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7622680664062	2	545.820421	1089.62629	0.22264	0.00012152	2.4425	0.0013332	2.6652	0.0014547	545.8215909351455	39.037	0.25467	39.123	39.04	39.295	0.08688					16	9	2	0	0	0	0.3576	1	6871	6871		0.79363	0	1	18534			9487	7231	6344	6389	12854	12854					0.08506183873146256
KYFLKPEVL	9	Unmodified	_KYFLKPEVL_					0	0	0		nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-2|NCEH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8228759765625	2	568.839342	1135.66413	0.19327	0.00010994	-0.30878	-0.00017564	-0.1155	-6.5702E-05	568.8392491556671	49.89	0.54608	49.963	49.717	50.263	0.07312					40	19	3	0	0	0	0.12515	1	10112	10112		27.223	11.074	1	219940			9488	3234	6345	6390	12855	12855					0.10172650067943323
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.8335571289062	2	645.331882	1288.64921	0.37005	0.00023881	-0.3452	-0.00022277	0.024851	1.6037E-05	645.3317015068125	60.789	0.74384	60.789	60.617	61.361	0					68	26	3	0	0	0	0.0041588	3	13606	13584;13606;13637		121.35	86.944	1	589630			9489	3543	6346	6391	12856;12857;12858	12857					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	430.556884765625	3	430.557013	1288.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.742	1	60.742	60.242	61.242	0								0	0	0	0.080799	1	13583	13583		39.213	31.367	1				9490	3543	6346	6391	12859	12859					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.3325805664062	2	645.331882	1288.64921	0.1245	8.0345E-05	0.062858	4.0564E-05	0.18736	0.00012091	645.3319359903993	60.691	0.80426	60.765	60.523	61.327	0.073421					65	27	3	0	0	0	0.0057749	2	13413	13413;13469		94.909	69.918	1	628490			9491	3543	6346	6391	12860;12861	12860					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	430.5568542480469	3	430.557013	1288.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.645	1	60.719	60.219	61.219	0.073421								0	0	0	0.080799	1	13417	13417		39.213	28.148	1				9492	3543	6346	6391	12862	12862					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	430.556884765625	3	430.557013	1288.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.805	1	60.879	60.379	61.379	0.073421								0	0	0	0.13213	1	13466	13466		28.234	23.518	1				9493	3543	6346	6391	12863	12863					0.016431581999313494
KYFLWVVKF	9	Unmodified	_KYFLWVVKF_					0	0	0		nc|ENSG00000177885|P62993-2|GRB2;ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	nc|ENSG00000177885|P62993-2|GRB2	nc|ENSG00000177885|P62993-2|GRB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.57391357421875	3	410.574227	1228.70085	0.24844	0.000102	-0.30456	-0.00012505	-0.056123	-2.3043E-05	410.57398553534887	72.036	0.69466	72.036	71.834	72.528	0					57	23	4	0	0	0	0.047066	2	17014	17014;17066		43.982	22.392	1	450420			9494	4721	6347	6392	12864;12865	12864					0.09564946684486131
KYFLWVVKF	9	Unmodified	_KYFLWVVKF_					0	0	0		nc|ENSG00000177885|P62993-2|GRB2;ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	nc|ENSG00000177885|P62993-2|GRB2	nc|ENSG00000177885|P62993-2|GRB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7930908203125	2	615.357702	1228.70085	-0.38662	-0.00023791	0.59402	0.00036554	0.20741	0.00012763	615.3579296731987	72.006	0.64072	72.006	71.858	72.499	0					57	21	4	0	0	0	0.037903	1	17026	17026		66.457	58.301	1	602900			9495	4721	6347	6392	12866	12866					0.09564946684486131
KYFLWVVKF	9	Unmodified	_KYFLWVVKF_					0	0	0		nc|ENSG00000177885|P62993-2|GRB2;ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	nc|ENSG00000177885|P62993-2|GRB2	nc|ENSG00000177885|P62993-2|GRB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.57421875	3	410.574227	1228.70085	-0.034408	-1.4127E-05	-0.079365	-3.2585E-05	-0.11377	-4.6712E-05	410.57412816355077	71.948	0.72745	72.004	71.786	72.514	0.055939					59	25	3	0	0	0	0.095436	3	16839	16839;16896;16942		33.445	26.815	1	467570			9496	4721	6347	6392	12867;12868;12869	12867					0.09564946684486131
KYFLWVVKF	9	Unmodified	_KYFLWVVKF_					0	0	0		nc|ENSG00000177885|P62993-2|GRB2;ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	nc|ENSG00000177885|P62993-2|GRB2	nc|ENSG00000177885|P62993-2|GRB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.357666015625	2	615.357702	1228.70085	-0.22752	-0.00014	0.35566	0.00021886	0.12814	7.8852E-05	615.357708518042	71.951	0.64894	72.007	71.812	72.461	0.055931					54	22	3	0	0	0	0.0093024	1	16854	16854		85.642	66.28	1	809940			9497	4721	6347	6392	12870	12870					0.09564946684486131
KYFNQIVGF	9	Unmodified	_KYFNQIVGF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7837524414062	2	558.297842	1114.58113	0.61603	0.00034393	-0.28544	-0.00015936	0.33059	0.00018457	558.2975490813583	63.78	0.51578	63.78	63.563	64.078	0					28	18	2	0	0	0	0.1478	1	14491	14491		34.102	17.16	1	305130			9498	3194	6348	6393	12871	12871					0.028423333399359763
KYFNQIVGF	9	Unmodified	_KYFNQIVGF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7996215820312	2	558.297842	1114.58113	0.62283	0.00034773	-0.15492	-8.6493E-05	0.46791	0.00026123	558.2976838598211	63.707	0.46531	63.778	63.534	63.999	0.071018					24	15	2	0	0	0	0.065541	1	14344	14344		39.957	23.015	1	379500			9499	3194	6348	6393	12872	12872					0.028423333399359763
KYFPEPELF	9	Unmodified	_KYFPEPELF_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2980346679688	2	585.297507	1168.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.461	1	67.526	67.026	68.026	0.065071								0	0	0	0.059996	1	15482	15482		45.7	21.026	1				9500	3283	6349	6394	12873	12873					0.002914939002266692
KYFPYLVL	8	Unmodified	_KYFPYLVL_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C;ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000171488|ENST00000370454|LRRC8C;ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.8020629882812	2	521.802229	1041.5899	0.26133	0.00013636	0.37465	0.00019549	0.63598	0.00033185	521.8020585467667	73.636	0.42717	73.688	73.51	73.937	0.052567					36	15	3	0	0	0	0.45077	1	17358	17358		19.439	10.092	1	130300			9501	2808;4440	6350	6395	12874	12874					0.07077306976407272
KYFPYLVL	8	Unmodified	_KYFPYLVL_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C;ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000171488|ENST00000370454|LRRC8C;ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	521.802229	1041.5899	0.1084	5.6561E-05	0.038282	1.9975E-05	0.14668	7.6536E-05	521.8019082358132	73.682	0.45519	73.682	73.464	73.92	0	-0.0031126	-9.4581E-05	NaN	19.439	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132930			9502	2808;4440	6350	6395							0.07077306976407272
KYFPYLVLL	9	Unmodified	_KYFPYLVLL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.344482421875	2	578.344261	1154.67397	0.50481	0.00029195	-0.038377	-2.2195E-05	0.46643	0.00026976	578.3441483783694	82.718	1.1244	82.718	82.509	83.634	0					106	38	4	0	0	0	0.0076571	4	20330	20284;20330;20383;20506		74.423	0	1	1355000			9503	2808	6351	6396	12875;12876;12877;12878	12876					0.10281838073319705
KYFPYLVLL	9	Unmodified	_KYFPYLVLL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3445434570312	2	578.344261	1154.67397	0.39568	0.00022884	0.066586	3.851E-05	0.46226	0.00026735	578.3442244264032	82.758	1.4996	82.78	82.537	84.037	0.021744					104	52	4	0	0	0	0.024893	4	20126	20126;20177;20252;20336		54.774	0	1	1604200			9504	2808	6351	6396	12879;12880;12881;12882	12879					0.10281838073319705
KYFPYLVVI	9	Unmodified	_KYFPYLVVI_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3364868164062	2	571.336436	1140.65832	0.25026	0.00014298	-0.105	-5.999E-05	0.14526	8.2991E-05	571.3363268812526	77.928	0.88306	77.928	77.716	78.599	0					72	29	3	0	0	0	0.05573	1	18830	18830		42.095	22.838	1	818910			9505	4423	6352	6397	12883	12883					0.09361551556276027
KYFPYLVVI	9	Unmodified	_KYFPYLVVI_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.3363647460938	2	571.336436	1140.65832	0.43381	0.00024785	-0.25743	-0.00014708	0.17638	0.00010077	571.3362118782838	77.923	0.87885	77.958	77.74	78.619	0.034485					72	30	4	0	0	0	0.092418	1	18675	18675		34.102	20.196	1	1049700			9506	4423	6352	6397	12884	12884					0.09361551556276027
KYFQGDLQLF	10	Unmodified	_KYFQGDLQLF_					0	0	0		ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2;ENSG00000005882|ENST00000503176|PDK2	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8270874023438	2	629.826963	1257.63937	0.36906	0.00023244	-0.64859	-0.0004085	-0.27954	-0.00017606	629.8263336299663	69.835	0.96174	69.835	69.545	70.506	0					63	34	3	0	0	0	0.086038	1	16369	16369		47.732	9.758	1	622180			9507	359	6353	6398	12885	12885					0.02085970194548281
KYFQKMFRL	9	Unmodified	_KYFQKMFRL_					0	0	0			REV__nc|ENSG00000172116|P10966-7|CD8B	REV__nc|ENSG00000172116|P10966-7|CD8B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.575439453125	3	420.902238	1259.68488	0.35834	0.00015082	1.3031	0.00054849	1.6615	0.00069931	420.9027544916293	36.364	0.21767	36.364	36.184	36.402	0					11	8	2	0	0	0	0.25822	1	6155	6155		2.7352	0.23671	1	12996	+		9508	10278	6354	6399	12886	12886					0.06542917175966068
KYFSFPVFF	9	Unmodified	_KYFSFPVFF_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.3051147460938	2	591.305136	1180.59572	0.21634	0.00012792	0.15336	9.0684E-05	0.3697	0.00021861	591.3051355922224	86.393	0.63403	86.393	86.125	86.759	0					72	23	5	0	0	0	0.0044564	2	21428	21384;21428		92.653	28.697	1	2205200			9509	2614	6355	6400	12887;12888	12888					0.012644054880638578
KYFSFPVFF	9	Unmodified	_KYFSFPVFF_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.3052368164062	2	591.305136	1180.59572	0.40581	0.00023996	-0.044684	-2.6422E-05	0.36113	0.00021354	591.3050163099094	86.32	0.56541	86.345	86.138	86.704	0.025169					76	22	4	0	0	0	0.0044564	3	21245	21202;21245;21293		92.653	20.731	1	2750700			9510	2614	6355	6400	12889;12890;12891	12890					0.012644054880638578
KYFTQFCVKF	10	Unmodified	_KYFTQFCVKF_					0	0	0		ENST00000570359.1_1_17:440266-440455:-|nuORF;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	ENST00000570359.1_1_17:440266-440455:-|nuORF	ENST00000570359.1_1_17:440266-440455:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5580139160156	3	437.558248	1309.65292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.084	1	61.158	60.658	61.658	0.073421								0	0	0	0.30454	1	13551	13551		17.049	6.7333	1				9511	3047	6356	6401	12892	12892					0.010475047021145656
KYFVDKKNY	9	Unmodified	_KYFVDKKNY_					0	0	0		nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.29931640625	2	602.821681	1203.62881	0.51617	0.00031116	-3.0561	-0.0018423	-2.5399	-0.0015311	602.8200107433306	59.778	0.33652	59.778	59.68	60.017	0					36	12	4	0	0	0	0.25376	1	13275	13275		6.2058	2.2614	1	178840			9512	3225	6357	6402	12893	12893					0.035139875401455356
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant;ENSG00000117481|ENST00000474844|NSUN4	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2744140625	2	513.274367	1024.53418	0.21376	0.00010972	-0.21572	-0.00011072	-0.0019617	-1.0069E-06	513.27424485087	48.8	0.95868	48.8	48.576	49.534	0					72	33	3	0	0	0	0.0042692	2	9932	9932;9982		99.799	42.077	1	434780			9513	2004	6358	6403	12894;12895	12894					0.02289473788800933
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant;ENSG00000117481|ENST00000474844|NSUN4	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2743530273438	2	513.274367	1024.53418	0.16857	8.6524E-05	0.032134	1.6494E-05	0.20071	0.00010302	513.2742953492069	48.689	0.83617	48.765	48.567	49.404	0.076607					54	29	3	0	0	0	0.0084662	2	9770	9770;9817		71.922	35.416	1	505940			9514	2004	6358	6403	12896;12897	12896					0.02289473788800933
KYGDIIFDF	9	Unmodified	_KYGDIIFDF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8159790039062	2	559.281857	1116.54916	0.42004	0.00023492	0.35617	0.0001992	0.77621	0.00043412	559.2816888039505	76.795	0.47183	76.795	76.615	77.086	0					38	16	3	0	0	0	0.1076	1	18478	18478		45.74	15.899	1	394990			9515	4047	6359	6404	12898	12898					-0.004450791338513227
KYGDIIFDF	9	Unmodified	_KYGDIIFDF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8159790039062	2	559.281857	1116.54916	0.54161	0.00030291	-0.10192	-5.7E-05	0.4397	0.00024591	559.2815045939313	76.748	0.43848	76.788	76.608	77.046	0.03923					39	15	3	0	0	0	0.063168	1	18323	18323		59.368	21.193	1	391860			9516	4047	6359	6404	12899	12899					-0.004450791338513227
KYGFGYQL	8	Unmodified	_KYGFGYQL_					0	0	0		nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5;ENSG00000145632|ENST00000274289|PLK2	nc|ENSG00000185988|Q496M5-2|PLK5	nc|ENSG00000185988|Q496M5-2|PLK5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.25103759765625	2	488.25036	974.486168	0.24031	0.00011733	0.46876	0.00022887	0.70907	0.00034621	488.2504746928016	53.557	0.8566	53.557	53.335	54.192	0					72	31	4	0	0	0	0.039635	2	11368	11368;11417		64.236	34.012	1	747860			9517	3255	6360	6405	12900;12901	12900					-0.0020960013124522447
KYGFGYQL	8	Unmodified	_KYGFGYQL_					0	0	0		nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5;ENSG00000145632|ENST00000274289|PLK2	nc|ENSG00000185988|Q496M5-2|PLK5	nc|ENSG00000185988|Q496M5-2|PLK5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2506408691406	2	488.25036	974.486168	0.29671	0.00014487	0.36197	0.00017673	0.65868	0.0003216	488.2504812600459	53.517	0.56135	53.583	53.411	53.973	0.06543					59	25	3	0	0	0	0.039635	2	11223	11223;11268		64.236	34.012	1	648320			9518	3255	6360	6405	12902;12903	12902					-0.0020960013124522447
KYGFTLRA	8	Unmodified	_KYGFTLRA_					0	0	0		ENSG00000105613|ENST00000251472|MAST1;ENSG00000086015|ENST00000361297|MAST2	ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2713317871094	2	478.271627	954.528701	-0.3775	-0.00018055	-0.21491	-0.00010278	-0.5924	-0.00028333	478.27158481687275	43.616	1.2389	43.616	43.263	44.502	0					108	43	3	0	0	0	0.4433	1	8414	8414		20.454	1.0146	1	581960			9519	972	6361	6406	12904	12904					0.04961794996984281
KYGIQMPAF	9	Unmodified	_KYGIQMPAF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2393798828125	2	527.773145	1053.53174	0.40695	0.00021478	0.3173	0.00016746	0.72425	0.00038224	527.7732937833266	62.806	0.39091	62.806	62.521	62.912	0					23	13	2	0	0	0	0.15911	1	14192	14192		32.305	11.434	1	104060			9520	3024	6362	6407	12905	12905					0.007113020594943009
KYGIQMPAF	9	Unmodified	_KYGIQMPAF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.773681640625	2	527.773145	1053.53174	0.3303	0.00017432	-1.8454	-0.00097394	-1.5151	-0.00079961	527.7731339351533	62.624	0.40284	62.697	62.503	62.906	0.072701					24	13	3	0	0	0	0.21398	1	14036	14036		16.942	3.4344	1	151650			9521	3024	6362	6407	12906	12906					0.007113020594943009
KYGIVLKEF	9	Unmodified	_KYGIVLKEF_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.8239135742188	2	548.823692	1095.63283	0.25409	0.00013945	0.30935	0.00016978	0.56343	0.00030923	548.8237080218763	50.174	0.49972	50.174	49.935	50.435	0					39	17	3	0	0	0	0.064247	1	10367	10367		40.239	24.09	1	166000			9522	2300	6363	6408	12907	12907					0.0888407703384928
KYGIVLKEF	9	Unmodified	_KYGIVLKEF_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.8234252929688	2	548.823692	1095.63283	0.34616	0.00018998	-0.16694	-9.1622E-05	0.17921	9.8357E-05	548.8234801885749	50.079	0.45857	50.152	49.956	50.414	0.07312					35	15	3	0	0	0	0.071704	1	10204	10204		38.615	25.572	1	171730			9523	2300	6363	6408	12908	12908					0.0888407703384928
KYGIVQEF	8	Unmodified	_KYGIVQEF_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.26336669921875	2	492.263468	982.512382	0.21082	0.00010378	-0.075733	-3.7281E-05	0.13508	6.6496E-05	492.2633318382992	51.127	0.69555	51.127	50.957	51.652	0					48	23	3	0	0	0	0.027476	2	10659	10659;10708		71.922	21.067	1	211870			9524	3414	6364	6409	12909;12910	12909					0.02042669040235978
KYGIVQEF	8	Unmodified	_KYGIVQEF_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2634582519531	2	492.263468	982.512382	0.29422	0.00014484	-0.033915	-1.6695E-05	0.26031	0.00012814	492.2633783947476	51.088	0.72038	51.158	50.936	51.656	0.069874					46	28	3	0	0	0	0.065403	1	10504	10504		60.074	25.971	1	186800			9525	3414	6364	6409	12911	12911					0.02042669040235978
KYGIVQEFF	9	Unmodified	_KYGIVQEFF_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7979125976562	2	565.797675	1129.5808	0.33989	0.00019231	-0.1536	-8.6905E-05	0.18629	0.0001054	565.7975245322044	68.187	1.2507	68.187	67.914	69.165	0					109	45	3	0	0	0	0.00061878	2	15835	15835;15877		129.77	68.17	1	2078900			9526	3414	6365	6410	12912;12913	12912					0.02118913620074636
KYGIVQEFF	9	Unmodified	_KYGIVQEFF_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7977905273438	2	565.797675	1129.5808	0.41484	0.00023471	-0.12461	-7.0507E-05	0.29022	0.00016421	565.7974398920011	68.116	1.1216	68.179	67.961	69.083	0.063507					109	42	3	0	0	0	0.0011184	2	15706	15663;15706		121.53	59.932	1	2233800			9527	3414	6365	6410	12914;12915	12915					0.02118913620074636
KYGLGFQII	9	Unmodified	_KYGLGFQII_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.8030395507812	2	519.80276	1037.59097	0.43949	0.00022845	-1.6366	-0.00085072	-1.1971	-0.00062227	519.8026784830943	68.353	1.4356	68.353	67.669	69.104	0					114	53	3	0	0	0	0.0569	2	15903	15903;15945		41.84	16.44	1	1034700			9528	3929	6366	6411	12916;12917	12916					0.07367521345327077
KYGLGFQII	9	Unmodified	_KYGLGFQII_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.802978515625	2	519.80276	1037.59097	0.3782	0.00019659	-1.644	-0.00085455	-1.2658	-0.00065796	519.8027129082898	68.286	1.4001	68.349	67.812	69.212	0.063507					124	52	3	0	0	0	0.03472	1	15738	15738		47.749	19.262	1	1239800			9529	3929	6366	6411	12918	12918					0.07367521345327077
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7925109863281	2	487.792727	973.5709	-0.25676	-0.00012525	-0.046057	-2.2466E-05	-0.30282	-0.00014771	487.7925887424557	32.153	1.3183	32.153	31.957	33.275	0					100	56	3	0	0	0	0.43379	3	4962	4914;4962;5003		21.747	4.8044	1	292940			9530	1878	6367	6412	12919;12920;12921	12920					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7925109863281	2	487.792727	973.5709	-0.21022	-0.00010254	0.0024903	1.2148E-06	-0.20773	-0.00010133	487.7926000015562	32.108	0.98799	32.181	31.926	32.914	0.073784					112	49	4	0	0	0	0.43379	2	4782	4782;4826		21.747	9.2151	1	292800			9531	1878	6367	6412	12922;12923	12922					0.08305770405377189
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.747314453125	2	472.747453	943.480354	0.15622	7.3852E-05	0.0049931	2.3605E-06	0.16121	7.6212E-05	472.7473498593885	60.935	0.7276	60.935	60.72	61.447	0					72	25	4	0	0	0	0.028386	4	13726	13633;13677;13726;13783		100.37	54.671	1	918070			9532	264	6368	6413	12924;12925;12926;12927	12926					0.006353013570901567
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.7474060058594	2	472.747453	943.480354	-0.038757	-1.8322E-05	0.16621	7.8576E-05	0.12745	6.0254E-05	472.7474260968279	60.859	0.74979	60.932	60.719	61.469	0.073421					68	26	3	0	0	0	0.028386	4	13510	13462;13510;13562;13611		100.37	49.516	1	826920			9533	264	6368	6413	12928;12929;12930;12931	12929					0.006353013570901567
KYGQGFYLI	9	Unmodified	_KYGQGFYLI_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7926635742188	2	544.792392	1087.57023	0.44673	0.00024338	0.092257	5.0261E-05	0.53899	0.00029364	544.7921022171093	62.807	0.48386	62.807	62.631	63.115	0					30	18	3	0	0	0	0.18364	1	14226	14226		20.454	4.6064	1	274800			9534	795	6369	6414	12932	12932					0.0299493096565584
KYGQGFYLI	9	Unmodified	_KYGQGFYLI_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	544.792392	1087.57023	0.39292	0.00021406	0.63855	0.00034788	1.0315	0.00056194	544.7923756990403	62.754	0.42847	62.826	62.534	62.963	0.072701	0.0096212	0.00034816	NaN	20.454	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174280			9535	795	6369	6414							0.0299493096565584
KYGRIVEVL	9	Unmodified	_KYGRIVEVL_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.8265991210938	2	538.826766	1075.63898	0.18831	0.00010147	-0.57335	-0.00030894	-0.38504	-0.00020747	538.8261725488052	44.391	0.42987	44.48	44.305	44.735	0.088924					26	14	3	0	0	0	0.17428	1	8479	8479		21.537	6.6987	1	85996			9536	4407	6370	6415	12933	12933					0.1041859526535518
KYGTLDVTF	9	Unmodified	_KYGTLDVTF_					0	0	0		nc|ENSG00000143469|Q8NB59-4|SYT14;nc|ENSG00000143469|Q8NB59-2|SYT14;nc|ENSG00000143469|Q8NB59-3|SYT14;nc|ENSG00000143469|Q8NB59|SYT14;ENSG00000143469|ENST00000367019|SYT14;nc|ENSG00000143469|Q8NB59-5|SYT14;nc|ENSG00000143469|Q8NB59-7|SYT14	nc|ENSG00000143469|Q8NB59-4|SYT14	nc|ENSG00000143469|Q8NB59-4|SYT14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7540283203125	2	522.274032	1042.53351	-0.11695	-6.1082E-05	0.058319	3.0459E-05	-0.058635	-3.0624E-05	522.2743371987027	58.744	0.43855	58.744	58.572	59.01	0					28	15	3	0	0	0	0.23478	1	12954	12954		17.113	3.2068	1	130580			9537	3162	6371	6416	12934	12934					0.013946343490943036
KYGTLDVTF	9	Unmodified	_KYGTLDVTF_					0	0	0		nc|ENSG00000143469|Q8NB59-4|SYT14;nc|ENSG00000143469|Q8NB59-2|SYT14;nc|ENSG00000143469|Q8NB59-3|SYT14;nc|ENSG00000143469|Q8NB59|SYT14;ENSG00000143469|ENST00000367019|SYT14;nc|ENSG00000143469|Q8NB59-5|SYT14;nc|ENSG00000143469|Q8NB59-7|SYT14	nc|ENSG00000143469|Q8NB59-4|SYT14	nc|ENSG00000143469|Q8NB59-4|SYT14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.753662109375	2	522.274032	1042.53351	0.1269	6.6279E-05	0.065877	3.4406E-05	0.19278	0.00010068	522.2746168427889	58.656	0.47075	58.726	58.446	58.917	0.070477					29	15	3	0	0	0	0.19558	1	12808	12808		26.268	6.8291	1	169530			9538	3162	6371	6416	12935	12935					0.013946343490943036
KYGVFEESL	9	Unmodified	_KYGVFEESL_					0	0	0		ENST00000495668.1_1_11:5664055-5664936:+|nuORF;ENSG00000258659|ENST00000429814|TRIM34	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.7511596679688	2	536.27149	1070.52843	0.69289	0.00037157	-0.55715	-0.00029878	0.13574	7.2794E-05	536.2713484763949	54.339	0.51968	54.339	54.042	54.562	0					28	21	2	0	0	0	0.19558	1	11625	11625		26.268	16.194	1	314890			9539	5706	6372	6417	12936	12936					-0.004016695135305781
KYGVTFYNF	9	Unmodified	_KYGVTFYNF_					0	0	0		ENST00000510737.1_1_4:120160395-120160458:+|nuORF	ENST00000510737.1_1_4:120160395-120160458:+|nuORF	ENST00000510737.1_1_4:120160395-120160458:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7818603515625	2	569.782025	1137.5495	0.40259	0.00022939	-1.1811	-0.00067294	-0.77846	-0.00044355	569.781609048108	62.912	0.95816	62.912	62.66	63.618	0					55	35	3	0	0	0	0.012002	1	14243	14243		80.676	45.744	1	690760			9540	6916	6373	6418	12937	12937					-0.013776594140153975
KYGVTFYNF	9	Unmodified	_KYGVTFYNF_					0	0	0		ENST00000510737.1_1_4:120160395-120160458:+|nuORF	ENST00000510737.1_1_4:120160395-120160458:+|nuORF	ENST00000510737.1_1_4:120160395-120160458:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7817993164062	2	569.782025	1137.5495	0.35537	0.00020248	-0.36773	-0.00020952	-0.012357	-7.041E-06	569.7818572839467	62.791	0.90745	62.864	62.687	63.594	0.072701					61	36	3	0	0	0	0.029414	1	14066	14066		71.708	47.687	1	632930			9541	6916	6373	6418	12938	12938					-0.013776594140153975
KYHGYPYSF	9	Unmodified	_KYHGYPYSF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.271484375	2	581.271824	1160.5291	-0.37643	-0.00021881	-0.45748	-0.00026592	-0.83391	-0.00048473	581.2713862374064	41.305	0.92114	41.305	41.046	41.968	0					60	33	3	0	0	0	0.15403	1	7660	7660		34.402	10.381	1	172840			9542	7474;1298	6374	6419	12939	12939					-0.04474830073831981
KYHGYPYSF	9	Unmodified	_KYHGYPYSF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.271484375	2	581.271824	1160.5291	-0.10325	-6.0016E-05	-0.060312	-3.5058E-05	-0.16356	-9.5074E-05	581.2714682297506	41.167	0.74913	41.257	41.011	41.76	0.089642					67	29	4	0	0	0	0.010235	2	7536	7536;7585		66.457	47.2	1	267840			9543	7474;1298	6374	6419	12940;12941	12940					-0.04474830073831981
KYIATDFTL	9	Unmodified	_KYIATDFTL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.2901000976562	2	536.289682	1070.56481	0.55123	0.00029562	1.3975E-05	7.4946E-09	0.55125	0.00029563	536.2895601307505	60.287	0.765	60.287	60.069	60.834	0					68	27	3	0	0	0	0.0022565	1	13450	13450		114.2	81.896	1	499550			9544	872	6375	6420	12942	12942					0.0323520738318166
KYIATDFTL	9	Unmodified	_KYIATDFTL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	536.289682	1070.56481	0.43737	0.00023456	0.01859	9.9697E-06	0.45596	0.00024453	536.289719585829	60.176	0.806	60.249	60.045	60.851	0.07328	-0.01887	1.1107E-05	NaN	114.2	64	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578090			9545	872	6375	6420							0.0323520738318166
KYIDFDHVF	9	Unmodified	_KYIDFDHVF_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.8297729492188	2	592.292756	1182.57096	0.48481	0.00028715	-0.22646	-0.00013413	0.25835	0.00015302	592.2926412170974	60.013	1.1033	60.013	59.867	60.971	0					73	39	3	0	0	0	0.080641	1	13381	13381		51.63	35.481	1	939650			9546	387	6376	6421	12943	12943					-0.013022743853071006
KYIDFDHVF	9	Unmodified	_KYIDFDHVF_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.8297729492188	2	592.292756	1182.57096	0.22003	0.00013032	0.077813	4.6088E-05	0.29785	0.00017641	592.2928035850265	59.953	0.94894	60.026	59.824	60.773	0.072342					63	33	3	0	0	0	0.16392	1	13216	13216		32.786	16.939	1	793030			9547	387	6376	6421	12944	12944					-0.013022743853071006
KYIDQGIAEL	10	Unmodified	_KYIDQGIAEL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.3121948242188	2	575.311146	1148.60774	0.58068	0.00033407	0.4642	0.00026706	1.0449	0.00060113	575.3114511690316	54.747	0.38545	54.747	54.6	54.986	0					28	14	3	0	0	0	0.084799	1	11756	11756		48.073	16.035	1	325850			9548	4638	6377	6422	12945	12945					0.039379774406370416
KYIDQGIAEL	10	Unmodified	_KYIDQGIAEL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.3114013671875	2	575.311146	1148.60774	0.62028	0.00035685	0.18823	0.00010829	0.80851	0.00046514	575.3113104740681	54.699	0.31536	54.764	54.612	54.927	0.065128					34	14	3	0	0	0	0.13912	1	11594	11594		40.725	12.23	1	243280			9549	4638	6377	6422	12946	12946					0.039379774406370416
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E	ENST00000467447.1_1_6:42974755-42975804:+|nuORF	ENST00000467447.1_1_6:42974755-42975804:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.33447265625	2	577.334424	1152.6543	0.21322	0.0001231	0.080595	4.653E-05	0.29382	0.00016963	577.3344100829843	48.932	1.4218	48.932	48.683	50.105	0					129	49	4	0	0	0	8.8922E-09	2	9997	9950;9997		160.69	71.289	1	2384300			9550	870	6378	6423	12947;12948	12948					0.08407462062564264
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E	ENST00000467447.1_1_6:42974755-42975804:+|nuORF	ENST00000467447.1_1_6:42974755-42975804:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3345947265625	2	577.334424	1152.6543	0.16088	9.2883E-05	0.22922	0.00013234	0.3901	0.00022522	577.3344937820372	48.828	1.2969	48.904	48.633	49.93	0.076603					106	46	4	0	0	0	1.8205E-09	2	9841	9797;9841		173.69	73.931	1	1762800			9551	870	6378	6423	12949;12950	12950					0.08407462062564264
KYIDYIFNV	9	Unmodified	_KYIDYIFNV_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.8110961914062	2	587.810782	1173.60701	0.47174	0.00027729	-0.64373	-0.00037839	-0.172	-0.0001011	587.8107046792877	71.539	1.4472	71.539	71.135	72.582	0					125	50	4	0	0	0	0.002259	2	16853	16853;16903		114.19	66.438	1	4255200			9552	2924	6379	6424	12951;12952	12951					0.027151827915531612
KYIDYIFNV	9	Unmodified	_KYIDYIFNV_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.8109741210938	2	587.810782	1173.60701	0.58006	0.00034096	-0.65266	-0.00038364	-0.072607	-4.2679E-05	587.8106137009353	71.484	1.5295	71.543	71.133	72.662	0.058578					137	54	5	0	0	0	0.00041987	4	16717	16671;16717;16769;16924		133.05	74.373	1	3726100			9553	2924	6379	6424	12953;12954;12955;12956	12954					0.027151827915531612
KYIDYLMTW	9	Oxidation (M)	_KYIDYLM(Oxidation (M))TW_		KYIDYLM(1)TW		KYIDYLM(51)TW	0	0	1		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8035278320312	2	624.8021	1247.58965	0.48002	0.00029991	1.7964	0.0011224	2.2764	0.0014223	624.8036349191017	66.765	0.51357	66.765	66.555	67.068	0					26	19	2	0	0	0	0.029591	1	15449	15449		51.415	38.373	1	119130			9554	1867	6380	6425	12957	12957		111			-0.024244808057346745
KYIDYLMTW	9	Oxidation (M)	_KYIDYLM(Oxidation (M))TW_		KYIDYLM(1)TW		KYIDYLM(53)TW	0	0	1		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8016357421875	2	624.8021	1247.58965	0.16643	0.00010399	-0.012857	-8.0329E-06	0.15357	9.5953E-05	624.8018242114975	68.46	0.70497	68.46	68.07	68.775	0					56	24	3	0	0	0	0.026809	1	15923	15923		53.404	41.163	1	227210			9555	1867	6380	6425	12958	12958		111			-0.024244808057346745
KYIDYLMTW	9	Oxidation (M)	_KYIDYLM(Oxidation (M))TW_		KYIDYLM(1)TW		KYIDYLM(62)TW	0	0	1		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8027954101562	2	624.8021	1247.58965	0.34496	0.00021553	-0.24209	-0.00015126	0.10287	6.4273E-05	624.8017017243143	68.315	0.83827	68.379	68.089	68.927	0.063507					61	31	3	0	0	0	0.015341	1	15743	15743		61.602	45.453	1	230330			9556	1867	6380	6425	12959	12959		111			-0.024244808057346745
KYIEERLHTL	10	Unmodified	_KYIEERLHTL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.57830810546875	3	434.578588	1300.71394	0.07667	3.3319E-05	-0.6369	-0.00027678	-0.56023	-0.00024346	434.5782990503463	36.329	0.45856	36.41	36.259	36.717	0.081715					41	18	3	0	0	0	0.44671	1	6071	6071		5.4027	2.3304	1	73101			9557	1580	6381	6426	12960	12960					0.0756073300594835
KYIEERLHTL	10	Unmodified	_KYIEERLHTL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	434.578588	1300.71394	0.35174	0.00015286	-0.74863	-0.00032534	-0.3969	-0.00017248	434.5782098163057	36.507	0.54672	36.507	36.312	36.859	0	0.048187	-9.8371E-05	NaN	5.4027	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48203			9558	1580	6381	6426							0.0756073300594835
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2635498046875	2	529.263665	1056.51278	0.19268	0.00010198	-0.46741	-0.00024738	-0.27473	-0.0001454	529.2632517376285	50.397	0.85225	50.397	50.129	50.981	0					62	29	4	0	0	0	0.0042616	3	10416	10404;10416;10457		100.09	56.232	1	754940			9559	5296	6382	6427	12961;12962;12963	12962					-0.013219560305742561
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2636108398438	2	529.263665	1056.51278	0.30826	0.00016315	-0.49756	-0.00026334	-0.1893	-0.00010019	529.2634057471533	50.328	0.69762	50.401	50.097	50.795	0.07312					45	24	3	0	0	0	0.0028522	3	10307	10254;10262;10307		110.55	64.532	1	664260			9560	5296	6382	6427	12964;12965;12966	12966					-0.013219560305742561
KYIESPVLFL	10	Unmodified	_KYIESPVLFL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.849853515625	2	604.849907	1207.68526	0.63861	0.00038626	-0.30299	-0.00018326	0.33562	0.000203	604.8496049781498	74.522	0.45455	74.522	74.4	74.854	0					29	16	3	0	0	0	0.24525	1	17824	17824		28.495	15.452	1	197060			9561	1181	6383	6428	12967	12967					0.08972615376796966
KYIESPVLFL	10	Unmodified	_KYIESPVLFL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	604.849907	1207.68526	0.73918	0.00044709	-0.12479	-7.5482E-05	0.61439	0.00037161	604.8497690971552	74.517	0.44756	74.566	74.369	74.816	0.048538	0.021927	0.00014674	NaN	28.495	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137940			9562	1181	6383	6428							0.08972615376796966
KYIFCDIPWFR	11	Unmodified	_KYIFCDIPWFR_					0	0	0			REV__tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	REV__tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2639465332031	3	496.588319	1486.74313	0.026119	1.2971E-05	-0.53765	-0.00026699	-0.51153	-0.00025402	496.58818524386766	31.631	1.7429	31.705	31.026	32.769	0.07378					162	87	3	0	0	0	0.31101	1	4921	4921		0.40827	0.041592	1	109570	+		9563	13323	6384	6429	12968	12968					0.019225540305569666
KYIHFTPNF	9	Unmodified	_KYIHFTPNF_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8036499023438	2	583.803291	1165.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.685	1	49.685	49.185	50.185	0								0	0	0	4.3816E-05	1	10217	10217		96.936	64.15	1				9564	2883	6385	6430	12969	12969					0.01585735714229486
KYIHFTPNF	9	Unmodified	_KYIHFTPNF_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8037109375	2	583.803291	1165.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.853	1	49.853	49.353	50.353	0								0	0	0	0.1539	1	10268	10268		24.991	16.835	1				9565	2883	6385	6430	12970	12970					0.01585735714229486
KYIHFTPNF	9	Unmodified	_KYIHFTPNF_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8042602539062	2	583.803291	1165.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.935	1	49.935	49.435	50.435	0								0	0	0	0.17672	1	10293	10293		21.59	11.516	1				9566	2883	6385	6430	12971	12971					0.01585735714229486
KYIHFTPNF	9	Unmodified	_KYIHFTPNF_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8071899414062	2	583.803291	1165.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.191	1	50.191	49.691	50.691	0								0	0	0	0.26747	1	10371	10371		5.7319	1.7875	1				9567	2883	6385	6430	12972	12972					0.01585735714229486
KYIHFTPNF	9	Unmodified	_KYIHFTPNF_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.803466796875	2	583.803291	1165.59203	0.48992	0.00028602	0.98813	0.00057687	1.4781	0.00086289	583.8042381314001	49.644	1.1383	49.721	49.076	50.214	0.076607					67	40	3	0	0	0	0.0039507	2	10056	10056;10102		103.82	63.874	1	337040			9568	2883	6385	6430	12973;12974	12973					0.01585735714229486
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7951049804688	2	522.795466	1043.57638	-0.1111	-5.8085E-05	-0.36491	-0.00019077	-0.47602	-0.00024886	522.7952897589174	32.168	2.5417	32.168	31.937	34.478	0					254	103	4	0	0	0	0.0011298	3	4927	4927;4971;5015		121.35	77.573	1	1635500			9569	752;1151	6386	6431	12975;12976;12977	12975					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7952880859375	2	522.795466	1043.57638	-0.13556	-7.0869E-05	-0.3278	-0.00017137	-0.46335	-0.00024224	522.7953211463845	32.085	2.981	32.159	31.926	34.907	0.07378					287	133	5	0	0	0	1.0657E-05	3	4818	4777;4818;4857		148.27	100.05	1	1898100			9570	752;1151	6386	6431	12978;12979;12980	12979					0.05633449197171103
KYILLFCALL	10	Unmodified	_KYILLFCALL_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|100|3|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|100|3|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|100|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3579711914062	2	598.859221	1195.70389	0.19074	0.00011423	0.7258	0.00043465	0.91654	0.00054888	598.8594455308126	87.174	0.31248	87.174	87.008	87.32	0					18	12	2	0	0	0	0.31667	1	21604	21604		7.9102	3.1541	1	72376			9571	7382	6387	6432	12981	12981					0.11386453747013547
KYILVSLIL	9	Unmodified	_KYILVSLIL_					0	0	0		nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8174438476562	2	531.352086	1060.68962	0.83119	0.00044166	-0.41472	-0.00022036	0.41647	0.00022129	531.3517743797552	81.42	0.60744	81.42	81.173	81.78	0					45	20	3	0	0	0	0.23478	1	19926	19926		17.113	0	1	341150			9572	3041	6388	6433	12982	12982					0.16170124590371415
KYILVSLIL	9	Unmodified	_KYILVSLIL_					0	0	0		nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3521728515625	2	531.352086	1060.68962	0.59389	0.00031556	-0.16748	-8.899E-05	0.42641	0.00022657	531.3518841591746	81.322	0.54564	81.344	81.162	81.708	0.021866					45	19	3	0	0	0	0.03918	2	19704	19704;19749		45.7	0	1	344060			9573	3041	6388	6433	12983;12984	12983					0.16170124590371415
KYILVSLIL	9	Unmodified	_KYILVSLIL_					0	0	0		nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	531.352086	1060.68962	0.49692	0.00026404	-0.55511	-0.00029496	-0.058196	-3.0923E-05	531.8534336494606	81.785	0.16792	81.807	81.737	81.905	0.021866	0.19331	-0.00014646	NaN	17.113	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31316			9574	3041	6388	6433							0.16170124590371415
KYILVVPLI	9	Unmodified	_KYILVVPLI_					0	0	0		nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENSG00000070366|ENST00000263073|SMG6	nc|ENSG00000070366|Q86US8-2|SMG6	nc|ENSG00000070366|Q86US8-2|SMG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.35498046875	2	529.354628	1056.6947	0.56089	0.00029691	0.099266	5.2547E-05	0.66016	0.00034946	529.354568942938	79.598	0.58636	79.598	79.372	79.958	0					45	20	3	0	0	0	0.17247	1	19330	19330		21.747	3.6117	1	239860			9575	759	6389	6434	12985	12985					0.16862428452986933
KYILVVPLI	9	Unmodified	_KYILVVPLI_					0	0	0		nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENSG00000070366|ENST00000263073|SMG6	nc|ENSG00000070366|Q86US8-2|SMG6	nc|ENSG00000070366|Q86US8-2|SMG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3547973632812	2	529.354628	1056.6947	0.30487	0.00016139	0.26995	0.0001429	0.57482	0.00030428	529.3546592741452	79.544	0.57665	79.571	79.362	79.939	0.026428					43	20	3	0	0	0	0.12809	1	19195	19195		26.884	5.137	1	372050			9576	759	6389	6434	12986	12986					0.16862428452986933
KYINTDAKF	9	Unmodified	_KYINTDAKF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2930908203125	2	550.292756	1098.57096	0.16525	9.0935E-05	1.3887	0.00076422	1.554	0.00085515	550.292790438817	35.03	0.71432	35.03	34.796	35.51	0					90	24	5	0	0	0	0.02143	2	5767	5767;5812		57.249	17.299	1	323820			9577	1228	6390	6435	12987;12988	12987					0.02561725614691568
KYINTDAKF	9	Unmodified	_KYINTDAKF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.292724609375	2	550.292756	1098.57096	0.23811	0.00013103	1.3567	0.00074657	1.5948	0.0008776	550.2927880263228	34.943	0.73747	35.021	34.801	35.539	0.077892					101	29	5	0	0	0	0.0097877	2	5659	5622;5659		67.838	40.209	1	308630			9578	1228	6390	6435	12989;12990	12990					0.02561725614691568
KYIQEAEML	9	Oxidation (M)	_KYIQEAEM(Oxidation (M))L_		KYIQEAEM(1)L		KYIQEAEM(53)L	0	0	1		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7835083007812	2	570.783907	1139.55326	-0.57243	-0.00032673	0.20335	0.00011607	-0.36908	-0.00021066	570.7838089909976	42.023	0.88079	42.023	41.884	42.764	0					49	30	3	0	0	0	0.026809	1	7934	7934		53.404	35.258	1	204710			9579	1235	6391	6436	12991	12991		74			-0.01093357702461617
KYIQEAEML	9	Oxidation (M)	_KYIQEAEM(Oxidation (M))L_		KYIQEAEM(1)L		KYIQEAEM(77)L	0	0	1		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7836303710938	2	570.783907	1139.55326	-0.36304	-0.00020722	0.81036	0.00046254	0.44732	0.00025532	570.7840357106749	41.965	0.47678	42.055	41.893	42.37	0.089764					39	18	3	0	0	0	0.0068798	1	7762	7762		76.825	52.804	1	189830			9580	1235	6391	6436	12992	12992		74			-0.01093357702461617
KYIQKPGLL	9	Unmodified	_KYIQKPGLL_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2866821289062	2	530.331685	1058.64882	0.41132	0.00021814	-1.0337	-0.00054822	-0.62241	-0.00033008	530.3310369363745	38.304	0.27862	38.391	38.236	38.514	0.08688					12	9	2	0	0	0	0.25579	1	6643	6643		4.3292	0.73274	1	36883			9581	4889	6392	6437	12993	12993					0.12183783270756976
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8302001953125	2	589.830037	1177.64552	-0.049273	-2.9063E-05	0.10072	5.9409E-05	0.051449	3.0346E-05	589.8301302550763	27.21	2.2695	27.21	27.006	29.275	0					301	142	5	0	0	0	0.00015475	9	3486	3446;3486;3523;3560;3596;3634;3674;3711;3758		137.42	91.724	1	1644400			9582	3660	6393	6438	12994;12995;12996;12997;12998;12999;13000;13001;13002	12995					0.0638048842608896
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8302612304688	2	589.830037	1177.64552	0.061458	3.625E-05	0.057209	3.3744E-05	0.11867	6.9994E-05	589.830143565032	27.109	1.3337	27.195	26.975	28.308	0.086699					253	91	5	0	0	0	1.6618E-13	6	3326	3285;3326;3362;3400;3435;3478		193.29	130.72	1	1996400			9583	3660	6393	6438	13003;13004;13005;13006;13007;13008	13004					0.0638048842608896
KYIQRQQTI	9	Unmodified	_KYIQRQQTI_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3380126953125	2	589.33803	1176.66151	-0.068592	-4.0424E-05	0.26453	0.0001559	0.19594	0.00011548	589.338093690904	25.631	0.62606	25.631	25.464	26.09	0					102	48	3	0	0	0	0.24273	1	3028	3028		13.615	5.4593	1	110680			9584	4923	6394	6439	13009	13009					0.08024194662993978
KYIQRQQTI	9	Unmodified	_KYIQRQQTI_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3380737304688	2	589.33803	1176.66151	0.14437	8.508E-05	0.11325	6.6741E-05	0.25761	0.00015182	589.3380142033578	25.488	0.48188	25.583	25.411	25.892	0.094852					92	40	3	0	0	0	0.2359	1	2869	2869		14.405	2.9107	1	131720			9585	4923	6394	6439	13010	13010					0.08024194662993978
KYISGPHEL	9	Unmodified	_KYISGPHEL_					0	0	0		CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2792358398438	2	522.279649	1042.54475	-0.11434	-5.9719E-05	-0.48547	-0.00025355	-0.59981	-0.00031327	522.2793065797799	31.733	1.8871	31.733	31.517	33.404	0					139	80	4	0	0	0	7.0837E-07	1	4799	4799		128.93	66.36	1	755520			9586	121	6395	6440	13011	13011					0.025174564432290936
KYISGPHEL	9	Unmodified	_KYISGPHEL_					0	0	0		CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2794189453125	2	522.279649	1042.54475	-0.13638	-7.1229E-05	-0.31724	-0.00016569	-0.45362	-0.00023692	522.279410583578	31.698	1.7684	31.772	31.558	33.327	0.07378					140	84	4	0	0	0	3.4205E-07	1	4662	4662		140.63	68.711	1	859620			9587	121	6395	6440	13012	13012					0.025174564432290936
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000102547|ENST00000409308|CAB39L	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.3084106445312	2	546.308406	1090.60226	-0.10037	-5.4835E-05	0.39266	0.00021451	0.29228	0.00015968	546.3084752236584	30.514	1.6704	30.514	30.286	31.957	0					198	82	4	0	0	0	0.0047429	3	4458	4419;4458;4586		83.429	14.324	1	585180			9588	2758	6396	6441	13013;13014;13015	13014					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000102547|ENST00000409308|CAB39L	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3084106445312	2	546.308406	1090.60226	-0.064016	-3.4972E-05	0.3967	0.00021672	0.33268	0.00018175	546.3084751550967	30.477	1.0694	30.553	30.255	31.324	0.075403					179	61	4	0	0	0	0.0040167	2	4322	4284;4322		103.42	31.497	1	543760			9589	2758	6396	6441	13016;13017	13017					0.060582986487816015
KYITDVVKL	9	Unmodified	_KYITDVVKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8290405273438	2	539.828975	1077.6434	0.22219	0.00011994	-0.082913	-4.4759E-05	0.13927	7.5184E-05	539.8288542828557	50.743	1.2849	50.743	50.489	51.774	0					96	43	4	0	0	0	9.7567E-09	5	10525	10525;10570;10620;10682;10736		159.1	93.866	1	1121800			9590	2135	6397	6442	13018;13019;13020;13021;13022	13018					0.10768059688280118
KYITDVVKL	9	Unmodified	_KYITDVVKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8291625976562	2	539.828975	1077.6434	0.43021	0.00023224	-0.23639	-0.00012761	0.19382	0.00010463	539.8287498061316	50.673	0.88179	50.746	50.526	51.408	0.07312					78	33	4	0	0	0	1.1743E-05	3	10375	10375;10422;10468		147.24	91.064	1	853770			9591	2135	6397	6442	13023;13024;13025	13023					0.10768059688280118
KYITKSFNF	9	Unmodified	_KYITKSFNF_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3104248046875	2	574.310949	1146.60735	-0.15856	-9.1064E-05	-0.38116	-0.0002189	-0.53972	-0.00030997	574.8122820344438	44.157	0.3809	44.157	43.978	44.359	0					26	12	3	0	0	0	0.31389	1	8555	8555		4.897	0	1	118830			9592	3029	6398	6443	13026	13026					0.03990602511407815
KYITKSFNF	9	Unmodified	_KYITKSFNF_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.310949	1146.60735	-0.0009616	-5.5226E-07	-0.69042	-0.00039652	-0.69138	-0.00039707	574.811895661724	44.083	0.36175	44.172	44.003	44.365	0.088924	0.0072074	-0.00022821	NaN	4.897	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82808			9593	3029	6398	6443							0.03990602511407815
KYITKSFNFY	10	Unmodified	_KYITKSFNFY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.9087829589844	3	437.564168	1309.67067	0.3305	0.00014462	-0.66371	-0.00029042	-0.33321	-0.0001458	437.56369870269236	48.843	0.65258	48.843	48.63	49.283	0					50	22	3	0	0	0	0.40338	2	9934	9934;9992		11.518	4.0408	1	260940			9594	3029	6399	6444	13027;13028	13027					0.028225432286490104
KYITKSFNFY	10	Unmodified	_KYITKSFNFY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.56390380859375	3	437.564168	1309.67067	0.011665	5.1043E-06	-0.12715	-5.5638E-05	-0.11549	-5.0534E-05	437.5639353812254	48.716	0.61236	48.792	48.604	49.216	0.076603					49	21	4	0	0	0	0.41463	1	9780	9780		10.315	3.6918	1	258920			9595	3029	6399	6444	13029	13029					0.028225432286490104
KYITQGQLL	9	Unmodified	_KYITQGQLL_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.3112182617188	2	532.310949	1062.60735	0.22204	0.0001182	-2.9793	-0.0015859	-2.7573	-0.0014677	532.3110781772997	48.884	0.95689	48.884	48.605	49.562	0					86	33	5	0	0	0	0.0011184	3	9989	9954;9989;10032		121.53	52.429	1	1613600			9596	440	6400	6445	13030;13031;13032	13031					0.0785460251142922
KYITQGQLL	9	Unmodified	_KYITQGQLL_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.3112182617188	2	532.310949	1062.60735	0.25877	0.00013775	-2.7754	-0.0014774	-2.5166	-0.0013396	532.3110952507061	48.784	0.82442	48.861	48.604	49.428	0.076607					69	29	4	0	0	0	0.004443	3	9847	9790;9804;9847		93.166	40.898	1	1331600			9597	440	6400	6445	13033;13034;13035	13035					0.0785460251142922
KYITTTLFL	9	Unmodified	_KYITTTLFL_					0	0	0		nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7577514648438	2	550.323525	1098.6325	0.72948	0.00040145	-0.72051	-0.00039651	0.0089672	4.9349E-06	550.3233346413055	67.698	0.38386	67.761	67.635	68.019	0.063507					17	12	2	0	0	0	0.22821	1	15578	15578		19.362	10.769	1	139350			9598	1015	6401	6446	13036	13036					0.08712657313981254
KYIYQTLFL	9	Unmodified	_KYIYQTLFL_					0	0	0		ENST00000468386.2_1_2:70057024-70067283:+|nuORF;ENSG00000087338|ENST00000282570|GMCL1;ENSG00000244234|ENST00000463439|GMCL2	ENST00000468386.2_1_2:70057024-70067283:+|nuORF	ENST00000468386.2_1_2:70057024-70067283:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.8392333984375	2	594.8368	1187.65905	0.02786	1.6572E-05	1.8105	0.001077	1.8384	0.0010935	594.837913683615	72.705	0.81079	72.761	72.401	73.211	0.055939					34	14	3	0	0	0	0.026809	1	17082	17082		53.404	30.668	1	561370			9599	997	6402	6447	13037	13037					0.07272346205309077
KYKEDEPLF	9	Unmodified	_KYKEDEPLF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7977294921875	2	584.797872	1167.58119	0.18011	0.00010533	0.1811	0.00010591	0.36121	0.00021123	584.7978717135519	39.659	0.3767	39.659	39.518	39.894	0					27	12	3	0	0	0	0.2546	2	7225	7177;7225		12.241	3.4953	1	62359			9600	3578	6403	6448	13038;13039	13039					0.0041028854927844804
KYKEDEPLF	9	Unmodified	_KYKEDEPLF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7988891601562	2	584.797872	1167.58119	0.42909	0.00025093	0.0092142	5.3885E-06	0.43831	0.00025632	584.7977817028351	39.573	0.4467	39.662	39.513	39.96	0.088562					25	16	2	0	0	0	0.28919	1	7024	7024		8.1555	2.8586	1	70434			9601	3578	6403	6448	13040	13040					0.0041028854927844804
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2926025390625	2	537.292559	1072.57057	0.24517	0.00013173	-0.013163	-7.0726E-06	0.23201	0.00012466	537.2924399397401	48.639	2.0604	48.639	48.399	50.46	0					156	72	4	0	0	0	3.0281E-09	1	9919	9919		171.47	114	1	1749400			9602	821	6404	6449	13041	13041					0.0371835068551718
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.292724609375	2	537.292559	1072.57057	0.42633	0.00022907	-0.07314	-3.9298E-05	0.35319	0.00018977	537.2924407111107	48.509	1.4675	48.589	48.357	49.824	0.080032					130	51	5	0	0	0	5.3369E-13	2	9749	9749;9795		187.93	120.59	1	2141300			9603	821	6404	6449	13042;13043	13042					0.0371835068551718
KYKRLKAE	8	Unmodified	_KYKRLKAE_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.3178100585938	2	518.319109	1034.62366	0.86416	0.00044791	-2.6952	-0.001397	-1.831	-0.00094907	518.3173816393223	80.356	0.37317	80.356	80.14	80.513	0					19	12	2	0	0	0	0.53858	1	19586	19586		2.3027	0	1	638790			9604	3137	6405	6450	13044	13044					0.10773728468166155
KYKRRRFQKT	10	Unmodified	_KYKRRRFQKT_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1;ENST00000587537.5_1_19:45480680-45489871:+|nuORF	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.9537353515625	3	470.952872	1409.83679	0.074378	3.5029E-05	1.4123	0.00066515	1.4867	0.00070018	470.9535686650436	38.014	0.55735	38.099	37.901	38.459	0.08448					39	20	3	0	0	0	0.47199	1	6619	6619		0.62683	0.12087	1	46450			9605	1437	6406	6451	13045	13045					0.1482603424788067
KYLAHLEQL	9	Unmodified	_KYLAHLEQL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.8162841796875	2	557.816399	1113.61824	-0.13057	-7.2835E-05	-0.28899	-0.00016121	-0.41957	-0.00023404	557.8162253611437	42.871	1.3799	42.871	42.654	44.034	0					91	48	4	0	0	0	1.9628E-05	2	8152	8152;8268		139.78	60.186	1	530740			9606	3844	6407	6452	13046;13047	13046					0.06598004885699993
KYLAHLEQL	9	Unmodified	_KYLAHLEQL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8147583007812	2	557.816399	1113.61824	0.056597	3.1571E-05	-0.23898	-0.00013331	-0.18239	-0.00010174	557.8162127169189	42.761	0.90549	42.851	42.65	43.556	0.089764					73	33	4	0	0	0	0.28472	1	8108	8108		8.7454	1.1365	1	540590			9607	3844	6407	6452	13048	13048					0.06598004885699993
KYLAILGSVTF	11	Unmodified	_KYLAILGSVTF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.35546875	2	606.355357	1210.69616	0.6406	0.00038843	-0.51295	-0.00031103	0.12765	7.7403E-05	606.3549860719838	76.488	0.76065	76.488	76.298	77.059	0					66	26	4	0	0	0	0.016841	1	18409	18409		91.085	48.772	1	1369600			9608	2044	6408	6453	13049	13049					0.09924017751086467
KYLAILGSVTF	11	Unmodified	_KYLAILGSVTF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2999877929688	2	606.355357	1210.69616	0.76753	0.0004654	-0.62192	-0.0003771	0.14562	8.8295E-05	606.3548968142749	76.389	0.87069	76.428	76.285	77.156	0.03923					67	31	4	0	0	0	0.30574	1	18326	18326		18.373	9.6277	1	1360400			9609	2044	6408	6453	13050	13050					0.09924017751086467
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.5699462890625	3	470.569759	1408.68745	0.2733	0.00012861	-0.2109	-9.9244E-05	0.062396	2.9362E-05	470.56965620810684	55.718	0.61961	55.718	55.497	56.116	0					66	21	6	0	0	0	0.021105	2	12030	12030;12081		64.688	54.923	1	1075600			9610	4312	6409	6454	13051;13052	13051					-0.0005500067604771175
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.5697937011719	3	470.569759	1408.68745	0.092747	4.3644E-05	-0.12465	-5.8657E-05	-0.031904	-1.5013E-05	470.5696826544451	55.68	0.57481	55.745	55.517	56.092	0.065128					61	20	4	0	0	0	0.050716	3	11926	11878;11926;11970		57.477	48.233	1	809330			9611	4312	6409	6454	13053;13054;13055	13054					-0.0005500067604771175
KYLDEFLLNKI	11	Unmodified	_KYLDEFLLNKI_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.9346008300781	3	465.934261	1394.78095	0.41947	0.00019544	-0.40809	-0.00019014	0.011382	5.3031E-06	465.9340018451749	67.656	0.60726	67.656	67.488	68.095	0					32	23	3	0	0	0	0.35428	1	15725	15725		11.798	6.5999	1	274950			9612	1123	6410	6455	13056	13056					0.09935343497045324
KYLDEFLLNKI	11	Unmodified	_KYLDEFLLNKI_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.9340515136719	3	465.934261	1394.78095	0.43613	0.00020321	-0.15211	-7.0872E-05	0.28402	0.00013233	465.9340803801081	67.644	0.54675	67.707	67.526	68.073	0.063499					37	18	3	0	0	0	0.32232	3	15516	15516;15563;15600		15.467	7.6205	1	241970			9613	1123	6410	6455	13057;13058;13059	13057					0.09935343497045324
KYLDIPKML	9	Oxidation (M)	_KYLDIPKM(Oxidation (M))L_		KYLDIPKM(1)L		KYLDIPKM(55)L	0	0	1		ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF	ENST00000588618.5_1_19:39138385-39212431:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8228149414062	2	568.822835	1135.63112	0.14925	8.4898E-05	0.41472	0.0002359	0.56397	0.0003208	568.8230568971381	49.849	0.59499	49.849	49.534	50.129	0					58	20	4	0	0	0	0.024248	1	10223	10223		55.235	17.261	1	254680			9614	2468;781;5675	6411	6456	13060	13060		44			0.06872699953578376
KYLDIPKML	9	Unmodified	_KYLDIPKML_					0	0	0		ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF	ENST00000588618.5_1_19:39138385-39212431:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2894897460938	2	560.825378	1119.6362	0.080193	4.4974E-05	-0.17466	-9.7956E-05	-0.09447	-5.2981E-05	560.8249983514926	58.411	0.36451	58.411	58.256	58.621	0					27	13	3	0	0	0	0.18321	1	12888	12888		30.703	6.6829	1	148480			9615	2468;781;5675	6411	6457	13061	13061					0.08117003816209944
KYLDIPKML	9	Unmodified	_KYLDIPKML_					0	0	0		ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF	ENST00000588618.5_1_19:39138385-39212431:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.289306640625	2	560.825378	1119.6362	0.32831	0.00018412	-0.8795	-0.00049325	-0.5512	-0.00030913	560.8244748402167	58.279	0.5645	58.349	58.184	58.749	0.070477					28	19	2	0	0	0	0.21599	1	12697	12697		22.658	6.509	1	148710			9616	2468;781;5675	6411	6457	13062	13062					0.08117003816209944
KYLDNPNAL	9	Unmodified	_KYLDNPNAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2765502929688	2	524.277106	1046.53966	-0.4139	-0.000217	-0.020693	-1.0849E-05	-0.43459	-0.00022784	524.2769364241476	42.524	0.49526	42.524	42.333	42.829	0					55	16	5	0	0	0	0.005983	2	8032	8032;8076		79.596	50.515	1	378220			9617	5283	6412	6458	13063;13064	13063					0.01825152580613576
KYLDNPNAL	9	Unmodified	_KYLDNPNAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.27685546875	2	524.277106	1046.53966	-0.33422	-0.00017522	0.13713	7.1893E-05	-0.19709	-0.00010333	524.2770872581985	42.433	0.57184	42.522	42.316	42.887	0.089764					52	20	4	0	0	0	0.005983	1	7890	7890		79.596	50.515	1	347090			9618	5283	6412	6458	13065	13065					0.01825152580613576
KYLDTGGDVF	10	Unmodified	_KYLDTGGDVF_					0	0	0		ENSG00000101052|ENST00000373030|IFT52	ENSG00000101052|ENST00000373030|IFT52	ENSG00000101052|ENST00000373030|IFT52	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7734375	2	557.774396	1113.53424	0.4195	0.00023398	1.5835	0.00088321	2.003	0.0011172	557.7760448252582	53.314	0.90169	53.314	53.085	53.987	0					49	35	2	0	0	0	0.34796	1	11335	11335		17.443	3.0373	1	151790			9619	1231	6413	6459	13066	13066					-0.017985710018365353
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.90777587890625	3	439.907823	1316.70164	0.45903	0.00020193	-0.36275	-0.00015958	0.096282	4.2355E-05	439.90754322921447	61.504	1.4712	61.504	61.251	62.722	0					185	66	4	0	0	0	0.16926	3	13818	13818;13859;13919		37.251	18.107	1	5024600			9620	1165	6414	6460	13067;13068;13069	13067					0.055956965429231786
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.9078369140625	3	439.907823	1316.70164	0.15583	6.8552E-05	-0.12876	-5.6643E-05	0.027072	1.1909E-05	439.90767551121513	61.422	1.3044	61.495	61.2	62.504	0.073421					154	62	3	0	0	0	0.1025	4	13649	13649;13690;13743;13823		44.945	30.107	1	5808400			9621	1165	6414	6460	13070;13071;13072;13073	13070					0.055956965429231786
KYLEERAMRQF	11	Unmodified	_KYLEERAMRQF_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.9222412109375	3	490.922249	1469.74492	0.25131	0.00012337	-0.63917	-0.00031378	-0.38786	-0.00019041	490.9220880739803	37.232	1.1675	37.232	36.962	38.129	0					115	42	4	0	0	0	0.3947	3	6463	6463;6515;6563		5.5233	5.115	1	158550			9622	1824	6415	6461	13074;13075;13076	13074					0.028835630485218644
KYLEERAMRQF	11	Unmodified	_KYLEERAMRQF_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.92242431640625	3	490.922249	1469.74492	0.23443	0.00011509	-0.27465	-0.00013483	-0.040217	-1.9743E-05	490.9221683926859	36.97	1.2148	37.052	36.853	38.068	0.081715					106	43	4	0	0	0	0.33915	3	6249	6249;6334;6381		13.535	11.1	1	331400			9623	1824	6415	6461	13077;13078;13079	13077					0.028835630485218644
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7794799804688	2	548.779679	1095.5448	-0.27456	-0.00015068	1.6439	0.00090216	1.3694	0.00075149	548.7797974525081	40.777	0.6101	40.777	40.562	41.172	0					69	21	5	0	0	0	0.0045688	2	7512	7512;7557		88.364	28.995	1	275470			9624	5433	6416	6462	13080;13081	13080					0.0008541165257156536
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7794799804688	2	548.779679	1095.5448	-0.10272	-5.6372E-05	0.29663	0.00016279	0.19391	0.00010641	548.7796801349865	40.683	0.60675	40.773	40.546	41.153	0.089645					48	23	3	0	0	0	0.0038428	2	7361	7361;7409		104.48	42.882	1	190430			9625	5433	6416	6462	13082;13083	13082					0.0008541165257156536
KYLEHPLLL	9	Unmodified	_KYLEHPLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3369750976562	2	563.336967	1124.65938	0.16553	9.3247E-05	0.084597	4.7657E-05	0.25012	0.0001409	563.3369151591166	51.715	0.98359	51.715	51.475	52.458	0					76	33	4	0	0	0	0.006264	2	10821	10821;10867		78.728	50.241	1	468450			9626	1869	6417	6463	13084;13085	13084					0.10203765925189145
KYLEHPLLL	9	Unmodified	_KYLEHPLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3370971679688	2	563.336967	1124.65938	0.30064	0.00016936	0.036962	2.0822E-05	0.3376	0.00019018	563.3369673787598	51.64	0.63986	51.71	51.475	52.115	0.069878					55	22	3	0	0	0	0.0093779	2	10665	10665;10712		69.105	40.618	1	405100			9627	1869	6417	6463	13086;13087	13086					0.10203765925189145
KYLEKYYNL	9	Unmodified	_KYLEKYYNL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.329345703125	2	617.329339	1232.64412	-0.6824	-0.00042127	0.081287	5.0181E-05	-0.60112	-0.00037109	617.3294595394179	44.581	0.52358	44.581	44.444	44.968	0					36	18	3	0	0	0	0.24914	1	8681	8681		12.873	7.5757	1	101230			9628	5240	6418	6464	13088	13088					0.037108543373278735
KYLEKYYNL	9	Unmodified	_KYLEKYYNL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.3294677734375	2	617.329339	1232.64412	-0.42013	-0.00025936	-0.45537	-0.00028111	-0.8755	-0.00054047	617.3292099274432	44.544	0.43045	44.631	44.395	44.825	0.087543					27	15	3	0	0	0	0.2359	1	8532	8532		14.405	5.66	1	84617			9629	5240	6418	6464	13089	13089					0.037108543373278735
KYLELCVDL	9	Unmodified	_KYLELCVDL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7932739257812	2	548.291368	1094.56818	0.55519	0.00030441	0.51523	0.00028249	1.0704	0.0005869	548.2914536157465	70.484	1.6619	70.484	70.196	71.858	0					167	59	5	0	0	0	0.0047429	3	16590	16523;16590;16750		83.429	45.118	1	1476300			9630	1558	6419	6465	13090;13091;13092	13091					0.02468134165542324
KYLELCVDL	9	Unmodified	_KYLELCVDL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2916870117188	2	548.291368	1094.56818	0.61484	0.00033711	0.30931	0.00016959	0.92416	0.00050671	548.2914121843882	70.407	1.6777	70.467	70.194	71.871	0.060562					155	63	5	0	0	0	0.0045224	3	16396	16351;16396;16430		90.135	54.008	1	3024400			9631	1558	6419	6465	13093;13094;13095	13094					0.02468134165542324
KYLELCVDL	9	Unmodified	_KYLELCVDL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2453002929688	2	548.291368	1094.56818	0.2331	0.00012781	-1.8167	-0.00099609	-1.5836	-0.00086828	548.7919440670961	71.906	0.64894	71.962	71.812	72.461	0.055939					50	22	4	0	0	0	0.20972	1	16882	16882		23.79	3.3362	1	162160			9632	1558	6419	6465	13096	13096					0.02468134165542324
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(57)IYSM(57)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.2807006835938	2	605.280143	1208.54573	0.51903	0.00031416	-0.3826	-0.00023158	0.13643	8.258E-05	605.2797093368836	46.716	0.5704	46.716	46.66	47.231	0					35	23	2	0	0	0	0.02143	1	9329	9329		57.249	34.513	1	198510			9633	5516	6420	6466	13097	13097		311;312			-0.05019833294386444
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(44)IYSM(44)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.771484375	2	605.280143	1208.54573	0.46071	0.00027886	0.78442	0.00047479	1.2451	0.00075365	605.280192690809	48.776	1.516	48.776	48.018	49.534	0					84	52	2	0	0	0	0.047066	2	9843	9843;10019		43.982	21.246	1	160880			9634	5516	6420	6466	13098;13099	13098		311;312			-0.05019833294386444
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(59)IYSM(59)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.2802124023438	2	605.280143	1208.54573	0.58128	0.00035184	-0.2415	-0.00014617	0.33978	0.00020566	605.2800135685031	46.705	0.40982	46.788	46.65	47.06	0.083096					36	19	3	0	0	0	0.018465	2	9214	9169;9214		59.368	34.513	1	166410			9635	5516	6420	6466	13100;13101	13101		311;312			-0.05019833294386444
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(44)IYSM(44)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7703857421875	2	605.280143	1208.54573	0.55436	0.00033554	0.81288	0.00049202	1.3672	0.00082757	605.2803054058325	48.366	1.2023	48.446	48.185	49.387	0.080032					72	41	2	0	0	0	0.047066	1	9725	9725		43.982	21.246	1	150770			9636	5516	6420	6466	13102	13102		311;312			-0.05019833294386444
KYLEMIYSM	9	Oxidation (M)	_KYLEMIYSM(Oxidation (M))_		KYLEM(0.002)IYSM(0.998)		KYLEM(-27)IYSM(27)	0	0	1		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.24951171875	2	597.282686	1192.55082	0.30559	0.00018252	0.12711	7.5921E-05	0.4327	0.00025844	597.2827003748203	57.946	0.95028	57.946	57.267	58.217	0					94	33	3	0	0	0	0.12868	1	12622	12622		42.312	19.576	2	325810			9637	5516	6420	6467	13103	13103		311;312			-0.03775529431800351
KYLENYYDL	9	Unmodified	_KYLENYYDL_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.7954711914062	2	610.795329	1219.5761	0.13274	8.108E-05	-0.67869	-0.00041454	-0.54594	-0.00033346	610.7943725957731	56.791	0.81424	56.791	56.539	57.354	0					58	28	4	0	0	0	0.010033	1	12410	12410		67.081	42.09	1	520490			9638	3422	6421	6468	13104	13104					-0.024900153133330605
KYLEQQFNL	9	Unmodified	_KYLEQQFNL_					0	0	0		nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.2801513671875	2	591.811313	1181.60807	0.51719	0.00030608	-0.33255	-0.00019681	0.18464	0.00010927	591.8103967088438	55.584	0.25259	55.584	55.497	55.749	0					13	8	2	0	0	0	0.24942	1	12062	12062		10.151	1.995	1	97062			9639	4663	6422	6469	13105	13105					0.024533971604796534
KYLERLKNN	9	Unmodified	_KYLERLKNN_					0	0	0		nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.33837890625	2	589.33803	1176.66151	-0.068592	-4.0424E-05	0.26453	0.0001559	0.19594	0.00011548	589.338093690904	25.631	0.62606	25.631	25.464	26.09	0					102	48	3	0	0	0	0.32831	1	3069	3069		2.9952	0	1	110680			9640	4253	6423	6470	13106	13106					0.08024194662993978
KYLESFLAF	9	Unmodified	_KYLESFLAF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3004150390625	2	559.30005	1116.58555	0.54207	0.00030318	0.25794	0.00014426	0.80001	0.00044744	559.3000085630164	75.153	0.81334	75.153	74.718	75.532	0					86	30	4	0	0	0	0.0050339	2	17966	17966;18015		82.529	34.879	1	3624000			9641	2261	6424	6471	13107;13108	13107					0.03191797762860915
KYLESFLAF	9	Unmodified	_KYLESFLAF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.300537109375	2	559.30005	1116.58555	0.53255	0.00029785	0.22436	0.00012548	0.7569	0.00042334	559.3000189307762	75.084	0.70174	75.128	74.867	75.569	0.044037					79	25	4	0	0	0	0.0081278	2	17841	17795;17841		72.968	36.841	1	3864900			9642	2261	6424	6471	13109;13110	13110					0.03191797762860915
KYLESVKPF	9	Unmodified	_KYLESVKPF_					0	0	0		ENSG00000005469|ENST00000331536|CROT;nc|ENSG00000005469|Q9UKG9-2|CROT	ENSG00000005469|ENST00000331536|CROT	ENSG00000005469|ENST00000331536|CROT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2933959960938	2	555.813325	1109.6121	0.019889	1.1055E-05	0.1949	0.00010833	0.21478	0.00011938	555.8132798592217	44.065	0.41554	44.065	43.913	44.329	0					17	13	2	0	0	0	0.24277	1	8518	8518		14.405	4.3315	1	39934			9643	351	6425	6472	13111	13111					0.061674866541807205
KYLFYESGW	9	Unmodified	_KYLFYESGW_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.260009765625	2	596.787307	1191.56006	0.31868	0.00019018	-3.343	-0.001995	-3.0243	-0.0018049	596.7852572511309	75.402	0.33797	75.402	75.251	75.589	0					24	12	2	0	0	0	0.2491	1	18094	18094		8.5933	1.4916	1	121510			9644	178	6426	6473	13112	13112					-0.028056767595899146
KYLGLLENL	9	Unmodified	_KYLGLLENL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8135375976562	2	531.813325	1061.6121	0.44689	0.00023766	-0.56938	-0.0003028	-0.12249	-6.5141E-05	531.8132085378408	68.374	0.91852	68.374	68.127	69.045	0					68	33	3	0	0	0	0.0072857	2	15896	15896;15947		75.571	11.61	1	542260			9645	5326	6427	6474	13113;13114	13113					0.08375486654176711
KYLGLLENL	9	Unmodified	_KYLGLLENL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8131713867188	2	531.813325	1061.6121	0.53806	0.00028615	-1.1611	-0.0006175	-0.62306	-0.00033135	531.8131317929598	68.233	0.74971	68.297	68.073	68.822	0.063507					69	28	3	0	0	0	0.013066	2	15762	15719;15762		63.227	3.6048	1	574020			9646	5326	6427	6474	13115;13116	13116					0.08375486654176711
KYLGQLHYL	9	Unmodified	_KYLGQLHYL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.8187255859375	2	567.818941	1133.62333	0.037724	2.1421E-05	-0.41658	-0.00023654	-0.37886	-0.00021512	567.81853631311	46.402	0.64732	46.402	45.927	46.574	0					60	26	3	0	0	0	0.0025191	2	9228	9184;9228		112.59	76.466	1	491550			9647	837	6428	6475	13117;13118	13118					0.06186308748306146
KYLGQLHYL	9	Unmodified	_KYLGQLHYL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.818603515625	2	567.818941	1133.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.679	1	46.679	46.179	47.179	0								0	0	0	0.22204	1	9310	9310		14.838	7.549	1				9648	837	6428	6475	13119	13119					0.06186308748306146
KYLGQLHYL	9	Unmodified	_KYLGQLHYL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8187866210938	2	567.818941	1133.62333	0.054095	3.0716E-05	-0.37617	-0.0002136	-0.32208	-0.00018288	567.818587599469	46.249	0.60426	46.335	45.954	46.558	0.085621					46	24	3	0	0	0	0.0012363	1	9050	9050		120.45	59.093	1	504190			9649	837	6428	6475	13120	13120					0.06186308748306146
KYLGQLTSI	9	Unmodified	_KYLGQLTSI_					0	0	0		ENST00000478582.5_1_7:45077926-45109516:+|nuORF;ENST00000472223.5_1_7:45067303-45110133:+|nuORF;nc|ENSG00000136280|Q9BSQ5-3|CCM2;nc|ENSG00000136280|Q9BSQ5-4|CCM2;ENSG00000136280|ENST00000258781|CCM2;nc|ENSG00000136280|Q9BSQ5-2|CCM2;ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000478582.5_1_7:45077926-45109516:+|nuORF	ENST00000478582.5_1_7:45077926-45109516:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.1632080078125	2	511.797675	1021.5808	0.2882	0.0001475	-0.0062668	-3.2074E-06	0.28193	0.00014429	511.797675197906	52.342	0.36536	52.41	52.267	52.632	0.067169					24	14	2	0	0	0	0.22821	1	10910	10910		19.362	7.1213	1	69226			9650	2787	6429	6476	13121	13121					0.07086913620082669
KYLINLETL	9	Unmodified	_KYLINLETL_					0	0	0		JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;ENSG00000096968|ENST00000381652|JAK2	JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8265991210938	2	553.826432	1105.63831	0.54468	0.00030166	-0.098604	-5.4609E-05	0.44608	0.00024705	553.826294812657	67.66	1.1588	67.66	67.428	68.587	0					92	42	3	0	0	0	5.8571E-07	3	15721	15680;15721;15764		157.8	82.034	1	1270400			9651	1114	6430	6477	13122;13123;13124	13123					0.08971755825655237
KYLINLETL	9	Unmodified	_KYLINLETL_					0	0	0		JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;ENSG00000096968|ENST00000381652|JAK2	JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8263549804688	2	553.826432	1105.63831	0.83628	0.00046315	-0.40904	-0.00022654	0.42724	0.00023661	553.8261190138102	67.685	0.85802	67.748	67.501	68.359	0.063507					76	30	4	0	0	0	1.3975E-05	2	15558	15515;15558		145.13	61.13	1	1254100			9652	1114	6430	6477	13125;13126	13126					0.08971755825655237
KYLKAVEEL	9	Unmodified	_KYLKAVEEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8184814453125	2	546.818607	1091.62266	-0.21249	-0.00011619	0.38697	0.0002116	0.17448	9.5409E-05	546.818658100034	40.428	0.72934	40.428	40.208	40.938	0					59	25	4	0	0	0	0.056368	1	7420	7420		41.956	10.687	1	186510			9653	605;13422	6431	6478	13127	13127					0.08051469308588821
KYLKAVEEL	9	Unmodified	_KYLKAVEEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.81884765625	2	546.818607	1091.62266	-0.063128	-3.452E-05	0.20821	0.00011385	0.14508	7.9332E-05	546.8186224595756	40.315	0.63998	40.405	40.237	40.877	0.089645					47	24	3	0	0	0	0.064247	2	7251	7251;7292		40.239	13.971	1	168580			9654	605;13422	6431	6478	13128;13129	13128					0.08051469308588821
KYLKEIRAV	9	Unmodified	_KYLKEIRAV_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;ENST00000550036.1_1_12:105556619-105558145:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.27490234375	2	560.347866	1118.68118	0.049753	2.7879E-05	0.22513	0.00012615	0.27488	0.00015403	560.3478736183636	30.856	0.37769	30.93	30.783	31.161	0.073782					29	18	2	0	0	0	0.25594	1	4409	4409		4.897	0	1	33693			9655	2764	6432	6479	13130	13130					0.12658570673738723
KYLKKMLSKL	10	Unmodified	_KYLKKMLSKL_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8959350585938	2	626.396502	1250.77845	-0.24199	-0.00015158	-3.2958	-0.0020645	-3.5378	-0.0022161	626.3939693996319	107.82	0.10934	107.82	107.79	107.9	0					34	17	3	0	0	0	0.44496	1	27837	27837		5.7319	0.43497	1	20555000			9656	4112	6433	6480	13131	13131					0.16309216558374828
KYLLAAGA	8	Unmodified	_KYLLAAGA_					0	0	0		nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17	nc|ENSG00000132466|O75179-5|ANKRD17	nc|ENSG00000132466|O75179-5|ANKRD17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.74200439453125	2	403.742171	805.469789	-0.078788	-3.181E-05	-0.011936	-4.819E-06	-0.090724	-3.6629E-05	403.7420649723683	21.415	0.875	21.415	21.232	22.107	0					165	85	3	0	0	0	0.53257	1	1821	1821		6.3541	2.0249	1	177880			9657	2574	6434	6481	13132	13132					0.059273187026519736
KYLLHSLVF	9	Unmodified	_KYLLHSLVF_					0	0	0		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.3319091796875	2	560.331685	1118.64882	0.3847	0.00021556	0.11198	6.2745E-05	0.49668	0.0002783	560.3315351589679	57.948	0.50671	57.948	57.71	58.217	0					37	17	3	0	0	0	0.03472	2	12717	12717;12767		47.749	28.492	1	264880			9658	6909	6435	6482	13133;13134	13133					0.09423783270767672
KYLLHSLVF	9	Unmodified	_KYLLHSLVF_					0	0	0		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.3321533203125	2	560.331685	1118.64882	0.42684	0.00023917	0.027909	1.5638E-05	0.45475	0.00025481	560.3315458108764	57.841	0.40972	57.91	57.724	58.134	0.068375					29	15	2	0	0	0	0.017478	2	12560	12560;12610		60.074	34.675	1	329260			9659	6909	6435	6482	13135;13136	13135					0.09423783270767672
KYLLKLKFNF	10	Unmodified	_KYLLKLKFNF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.6044006347656	3	438.604186	1312.79073	0.59942	0.00026291	-0.89535	-0.00039271	-0.29593	-0.0001298	438.60372122120856	57.743	0.48571	57.743	57.541	58.027	0					28	16	3	0	0	0	0.2145	1	12674	12674		32.037	14.174	1	156320			9660	3183	6436	6483	13137	13137					0.14684576293075224
KYLLKLKFNF	10	Unmodified	_KYLLKLKFNF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.6042175292969	3	438.604186	1312.79073	0.2106	9.2368E-05	-0.38925	-0.00017073	-0.17865	-7.8358E-05	438.6039386907165	57.623	0.42633	57.692	57.467	57.893	0.068371					36	15	4	0	0	0	0.3186	1	12495	12495		20.581	7.0623	1	194500			9661	3183	6436	6483	13138	13138					0.14684576293075224
KYLLKVAEL	9	Unmodified	_KYLLKVAEL_					0	0	0		ENST00000547000.1_1_12:101462478-101462640:+|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2515258789062	2	538.839342	1075.66413	0.24661	0.00013288	-0.25729	-0.00013864	-0.010687	-5.7584E-06	538.8391791828151	50.005	0.38445	50.005	49.85	50.234	0					30	13	3	0	0	0	0.25162	1	10310	10310		8.1555	4.559	1	152150			9662	1021	6437	6484	13139	13139					0.12932650067932627
KYLLKVAEL	9	Unmodified	_KYLLKVAEL_					0	0	0		ENST00000547000.1_1_12:101462478-101462640:+|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.839111328125	2	538.839342	1075.66413	0.41567	0.00022398	-0.20386	-0.00010985	0.21181	0.00011413	538.8391107180224	49.982	0.41976	50.055	49.817	50.237	0.07312					28	14	3	0	0	0	0.15482	1	10179	10179		23.79	6.6769	1	115700			9663	1021	6437	6484	13140	13140					0.12932650067932627
KYLLTPVNF	9	Unmodified	_KYLLTPVNF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7723999023438	2	547.815867	1093.61718	0.72379	0.00039651	-0.14479	-7.9317E-05	0.57901	0.00031719	547.8154446754354	65.696	0.36943	65.696	65.421	65.791	0					28	13	3	0	0	0	0.13369	1	15113	15113		33.445	16.332	1	307210			9664	2042	6438	6485	13141	13141					0.07411790516789551
KYLLTPVNF	9	Unmodified	_KYLLTPVNF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7723388671875	2	547.815867	1093.61718	0.56199	0.00030787	0.031486	1.7248E-05	0.59348	0.00032512	547.8156447586437	65.638	0.3252	65.705	65.522	65.847	0.066872					30	12	3	0	0	0	0.16724	1	14947	14947		27.223	11.376	1	398220			9665	2042	6438	6485	13142	13142					0.07411790516789551
KYLLTPVNFF	10	Unmodified	_KYLLTPVNFF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.350341796875	2	621.350074	1240.6856	-0.056523	-3.5121E-05	0.4364	0.00027116	0.37988	0.00023604	621.3502593741113	79.033	0.69008	79.033	78.846	79.536	0					63	23	4	0	0	0	0.17079	1	19175	19175		37.075	20.926	1	772590			9666	2042	6439	6486	13143	13143					0.07488035096616841
KYLLTPVNFF	10	Unmodified	_KYLLTPVNFF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3499755859375	2	621.350074	1240.6856	0.034625	2.1514E-05	0.23582	0.00014652	0.27044	0.00016804	621.35015912694	79.017	0.53981	79.048	78.852	79.392	0.030159					50	18	3	0	0	0	0.079509	2	18985	18985;19036		49.527	21.898	1	599150			9667	2042	6439	6486	13144;13145	13144					0.07488035096616841
KYLNIYVGL	9	Unmodified	_KYLNIYVGL_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7576293945312	2	541.815867	1081.61718	0.79288	0.00042959	0.13591	7.3638E-05	0.92879	0.00050323	541.8159069635891	66.287	0.33813	66.287	66.168	66.506	0					15	12	2	0	0	0	0.2298	1	15298	15298		16.942	1.0951	1	58907			9668	448	6440	6487	13146	13146					0.07963790516805602
KYLNIYVGL	9	Unmodified	_KYLNIYVGL_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7576293945312	2	541.815867	1081.61718	0.69777	0.00037806	0.70759	0.00038338	1.4054	0.00076145	541.8163949532367	66.296	0.22395	66.363	66.229	66.453	0.066872					10	7	2	0	0	0	0.18479	1	15131	15131		26.884	5.137	1	100960			9669	448	6440	6487	13147	13147					0.07963790516805602
KYLNWDAVF	9	Unmodified	_KYLNWDAVF_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2958984375	2	578.295299	1154.57605	0.37346	0.00021597	-0.2006	-0.000116	0.17287	9.9967E-05	578.2954988300495	71.565	0.48174	71.565	71.329	71.811	0					45	16	4	0	0	0	0.11547	1	16881	16881		29.082	10.935	1	319040			9670	3400	6441	6488	13148	13148					0.004940294773177811
KYLNWDAVF	9	Unmodified	_KYLNWDAVF_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2955322265625	2	578.295299	1154.57605	0.39065	0.00022591	-0.045428	-2.6271E-05	0.34523	0.00019964	578.2954139506712	71.507	0.41724	71.566	71.318	71.735	0.058578					32	14	3	0	0	0	0.12214	1	16703	16703		27.629	15.097	1	302000			9671	3400	6441	6488	13149	13149					0.004940294773177811
KYLNWDAVFRF	11	Unmodified	_KYLNWDAVFRF_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.9222412109375	3	486.922467	1457.74557	0.23355	0.00011372	-0.17276	-8.4119E-05	0.060798	2.9604E-05	486.9222193282929	74.334	0.36607	74.383	74.227	74.593	0.048546					20	12	2	0	0	0	0.36067	1	17580	17580		11.065	8.8126	1	144570			9672	3400	6442	6489	13150	13150					0.03500725759863599
KYLPALDEF	9	Unmodified	_KYLPALDEF_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.289794921875	2	548.289682	1094.56481	0.57502	0.00031528	-0.1084	-5.9433E-05	0.46662	0.00025584	548.2894331795139	64.074	1	64.074	63.87	64.87	0					92	35	4	0	0	0	0.00098507	1	14586	14586		99.755	41.076	1	1115600			9673	4775	6443	6490	13151	13151					0.021312073831722955
KYLPALDEF	9	Unmodified	_KYLPALDEF_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2899780273438	2	548.289682	1094.56481	0.50746	0.00027823	0.048449	2.6564E-05	0.55591	0.0003048	548.28953319771	63.992	0.94378	64.063	63.829	64.773	0.071018					95	33	5	0	0	0	0.0045019	1	14413	14413		92.653	33.975	1	1350000			9674	4775	6443	6490	13152	13152					0.021312073831722955
KYLPESNTL	9	Unmodified	_KYLPESNTL_					0	0	0		ENST00000324677.11_1_17:28011643-28088245:-|nuORF;ENST00000269033.7_1_17:28011643-28257046:-|nuORF	ENST00000324677.11_1_17:28011643-28088245:-|nuORF	ENST00000324677.11_1_17:28011643-28088245:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.784423828125	2	532.784764	1063.55498	-0.21374	-0.00011388	0.22042	0.00011744	0.0066799	3.559E-06	532.7847443675331	42.962	0.49506	42.962	42.736	43.231	0					28	16	3	0	0	0	0.15482	1	8184	8184		23.79	3.3752	1	127330			9675	5910	6444	6491	13153	13153					0.025740193777892273
KYLPEWTAW	9	Unmodified	_KYLPEWTAW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3030395507812	2	597.303124	1192.5917	0.418	0.00024967	0.43866	0.00026201	0.85666	0.00051168	597.3027816998108	68.981	1.1839	68.981	68.749	69.933	0					79	42	4	0	0	0	0.0068798	2	16080	16080;16133		76.825	57.568	1	934830			9676	896	6445	6492	13154;13155	13154					0.0031031599437483237
KYLPEWTAW	9	Unmodified	_KYLPEWTAW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3031005859375	2	597.303124	1192.5917	0.09292	5.5502E-05	1.404	0.00083861	1.4969	0.00089411	597.3031637987905	68.904	1.0346	68.966	68.718	69.752	0.062126					70	38	4	0	0	0	0.012041	2	15896	15896;15942		63.961	36.332	1	1015500			9677	896	6445	6492	13156;13157	13156					0.0031031599437483237
KYLPEWTAW	9	Unmodified	_KYLPEWTAW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3192749023438	2	597.303124	1192.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.006	1	70.066	69.566	70.566	0.060562								0	0	0	0.24978	1	16254	16254		9.3831	1.473	1				9678	896	6445	6492	13158	13158					0.0031031599437483237
KYLQILTSL	9	Unmodified	_KYLQILTSL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8289184570312	2	539.828975	1077.6434	0.48975	0.00026438	-0.057639	-3.1115E-05	0.43211	0.00023327	539.8289210497956	68.683	0.72796	68.683	68.348	69.076	0					45	26	3	0	0	0	0.010235	1	15988	15988		66.457	10.28	1	244500			9679	1620	6446	6493	13159	13159					0.10768059688280118
KYLQILTSL	9	Unmodified	_KYLQILTSL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.828857421875	2	539.828975	1077.6434	0.49087	0.00026499	-0.20131	-0.00010867	0.28956	0.00015631	539.8288700918391	68.551	0.61638	68.615	68.383	69	0.063507					45	23	3	0	0	0	0.020768	1	15815	15815		57.722	9.9733	1	358240			9680	1620	6446	6493	13160	13160					0.10768059688280118
KYLQSTISF	9	Unmodified	_KYLQSTISF_					0	0	0		TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B	TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant	TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.795654296875	2	543.795132	1085.57571	0.61862	0.0003364	0.47474	0.00025816	1.0934	0.00059456	543.7952811956511	54.607	1.547	54.607	54.401	55.948	0					124	61	3	0	0	0	0.00021732	2	11730	11689;11730		136.39	67.287	1	2643500			9681	1152	6447	6494	13161;13162	13162					0.036346097574551095
KYLQSTISF	9	Unmodified	_KYLQSTISF_					0	0	0		TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B	TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant	TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7955932617188	2	543.795132	1085.57571	0.6466	0.00035162	0.29607	0.000161	0.94267	0.00051262	543.7951868915678	54.6	0.90832	54.665	54.466	55.374	0.065128					107	43	3	0	0	0	0.00021732	2	11590	11546;11590		136.39	57.664	1	2372000			9682	1152	6447	6494	13163;13164	13164					0.036346097574551095
KYLRRSKEK	9	Unmodified	_KYLRRSKEK_					0	0	0			REV__ENSG00000041802|ENST00000265245|LSG1	REV__ENSG00000041802|ENST00000265245|LSG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.8511352539062	2	604.367121	1206.71969	0.79696	0.00048166	-0.90846	-0.00054904	-0.1115	-6.7385E-05	604.3664161516286	99.864	0.62991	99.907	99.709	100.34	0.042839					86	38	3	0	0	0	0.25875	1	25480	25480		1.8442	0.36234	1	415260	+		9683	8031	6448	6495	13165	13165					0.12459876308253115
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENST00000371720.5_1_9:139305120-139310743:+|nuORF;ENSG00000165688|ENST00000371717|PMPCA	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.2845458984375	2	518.284734	1034.55492	-0.15679	-8.1261E-05	-0.0034632	-1.7949E-06	-0.16025	-8.3056E-05	518.2847388762312	45.462	1.0895	45.462	45.177	46.267	0					94	37	4	0	0	0	1.5498E-07	1	8966	8966		158.2	109.86	1	822390			9684	4102	6449	6496	13166	13166					0.03902064168460129
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENST00000371720.5_1_9:139305120-139310743:+|nuORF;ENSG00000165688|ENST00000371717|PMPCA	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.2847290039062	2	518.284734	1034.55492	0.048393	2.5081E-05	0.0034056	1.7651E-06	0.051799	2.6846E-05	518.2847397604637	45.388	0.8992	45.475	45.237	46.136	0.087543					78	35	4	0	0	0	0.0005281	1	8822	8822		131.27	97.165	1	681500			9685	4102	6449	6496	13167	13167					0.03902064168460129
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.8300170898438	2	591.829506	1181.64446	0.40685	0.00024079	-0.082098	-4.8588E-05	0.32475	0.0001922	591.829604941444	59.8	1.9369	59.8	59.511	61.447	0					252	71	5	0	0	0	3.3074E-12	7	13297	13250;13297;13339;13381;13426;13474;13516		176.43	87.473	1	14912000			9686	2849	6450	6497	13168;13169;13170;13171;13172;13173;13174	13169					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.8299560546875	2	591.829506	1181.64446	0.24424	0.00014455	0.16652	9.855E-05	0.41075	0.0002431	591.8297026086551	59.673	1.961	59.746	59.491	61.452	0.072342					241	71	6	0	0	0	5.8394E-08	6	13130	13089;13130;13177;13216;13260;13306		155.95	77.226	1	13491000			9687	2849	6450	6497	13175;13176;13177;13178;13179;13180	13176					0.06090274057191891
KYLTEGLLQF	10	Unmodified	_KYLTEGLLQF_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.337646484375	2	606.337164	1210.65977	0.51723	0.00031361	0.065468	3.9696E-05	0.5827	0.00035331	606.3372691171035	71.683	1.5575	71.683	71.415	72.973	0					175	54	5	0	0	0	2.8895E-16	6	16929	16879;16929;16969;17013;17111;17287		185.27	118.82	1	9822300			9688	923	6451	6498	13181;13182;13183;13184;13185;13186	13182					0.06287140854374229
KYLTEGLLQF	10	Unmodified	_KYLTEGLLQF_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3375854492188	2	606.337164	1210.65977	0.62098	0.00037652	-0.074592	-4.5228E-05	0.54639	0.0003313	606.3371835742954	71.576	1.6359	71.634	71.378	73.014	0.058578					170	57	6	0	0	0	2.1349E-11	6	16750	16702;16750;16804;16853;16917;16969		173.14	115.42	1	12459000			9689	923	6451	6498	13187;13188;13189;13190;13191;13192	13188					0.06287140854374229
KYLTQVDILL	10	Unmodified	_KYLTQVDILL_					0	0	0		nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	nc|ENSG00000123485|Q8NCD3-2|HJURP	nc|ENSG00000123485|Q8NCD3-2|HJURP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3622436523438	2	603.360639	1204.70673	0.64163	0.00038714	0.26343	0.00015894	0.90506	0.00054608	603.3610144291758	70.946	0.37812	70.946	70.83	71.208	0					19	12	2	0	0	0	0.30917	1	16709	16709		21.59	7.1848	1	191450			9690	2220	6452	6499	13193	13193					0.11256000405523992
KYLTQVDILL	10	Unmodified	_KYLTQVDILL_					0	0	0		nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	nc|ENSG00000123485|Q8NCD3-2|HJURP	nc|ENSG00000123485|Q8NCD3-2|HJURP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3621215820312	2	603.360639	1204.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.887	1	70.946	70.446	71.446	0.058578								0	0	0	0.3315	1	16522	16522		10.151	2.5416	1				9691	2220	6452	6499	13194	13194					0.11256000405523992
KYLTRMIKR	9	Unmodified	_KYLTRMIKR_					0	0	0			REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.58160400390625	3	403.581387	1207.72233	0.65617	0.00026482	-0.77425	-0.00031247	-0.11807	-4.7652E-05	403.5811433248237	99.854	0.42632	99.854	99.788	100.21	0					35	23	2	0	0	0	0.34289	2	25498	25498;25562		1.0715	0.29493	1	252340	+		9692	9200	6453	6500	13195;13196	13195					0.12678008441548627
KYLTRMIKR	9	Unmodified	_KYLTRMIKR_					0	0	0			REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	403.581387	1207.72233	0.29781	0.00012019	-0.59233	-0.00023906	-0.29452	-0.00011886	403.58120843279136	99.861	0.56578	99.904	99.754	100.32	0.042831	0.024945	0.00010731	NaN	1.0715	50	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311850	+		9693	9200	6453	6500							0.12678008441548627
KYLTVKDYL	9	Unmodified	_KYLTVKDYL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.8265380859375	2	571.826432	1141.63831	0.16629	9.5089E-05	0.32488	0.00018577	0.49117	0.00028086	571.8265053123818	49.692	0.72626	49.692	49.508	50.234	0					65	25	4	0	0	0	0.0072857	1	10208	10208		75.571	31.589	1	608640			9694	3637	6454	6501	13197	13197					0.07315755825652559
KYLTVKDYL	9	Unmodified	_KYLTVKDYL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	571.826432	1141.63831	0.17666	0.00010102	0.55159	0.00031541	0.72825	0.00041643	571.8266872823486	49.632	0.72855	49.709	49.512	50.24	0.076607	0.008531	0.00015667	NaN	75.571	63	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448370			9695	3637	6454	6501							0.07315755825652559
KYLVIGDLLF	10	Unmodified	_KYLVIGDLLF_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8526611328125	2	590.85245	1179.69035	0.52327	0.00030918	-0.30203	-0.00017845	0.22125	0.00013072	590.8520834509767	85.572	1.2462	85.572	85.339	86.585	0					140	51	5	0	0	0	0.035596	4	21203	21119;21163;21203;21252		61.602	31.001	1	5211900			9696	1599	6455	6502	13198;13199;13200;13201	13200					0.1076891923939911
KYLVIGDLLF	10	Unmodified	_KYLVIGDLLF_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.305419921875	2	590.85245	1179.69035	0.15163	8.959E-05	-1.0245	-0.00060532	-0.87286	-0.00051573	590.8509246825085	86.621	0.1532	86.621	86.557	86.71	0					7	5	2	0	0	0	0.31515	1	21474	21474		14.405	5.0223	1	155540			9697	1599	6455	6502	13202	13202					0.1076891923939911
KYLVIGDLLF	10	Unmodified	_KYLVIGDLLF_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8526611328125	2	590.85245	1179.69035	0.69231	0.00040906	-0.58722	-0.00034696	0.10509	6.2094E-05	590.8518189393378	85.511	1.3504	85.536	85.337	86.688	0.025169					136	53	5	0	0	0	0.0094986	3	20967	20967;21016;21060		76.825	38.649	1	4912600			9698	1599	6455	6502	13203;13204;13205	13203					0.1076891923939911
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_		KYLVLANM(1)L		KYLVLANM(110)L	0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.8096313476562	2	540.809728	1079.6049	0.46142	0.00024954	-0.10525	-5.6919E-05	0.35618	0.00019262	540.8095324276877	57.337	0.73405	57.337	57.065	57.799	0					57	25	3	0	0	0	0.0027323	2	12570	12570;12630		111.29	78.501	1	757270			9699	4141	6456	6503	13206;13207	13206		250			0.06828430782070427
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_		KYLVLANM(1)L		KYLVLANM(75)L	0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.8095703125	2	540.809728	1079.6049	0.4984	0.00026954	-0.34161	-0.00018475	0.15679	8.4796E-05	540.8095427361441	60.219	1.5243	60.219	59.836	61.361	0					129	54	3	0	0	0	0.0074933	2	13545	13376;13545		74.929	55.672	1	460880			9700	4141	6456	6503	13208;13209	13209		250			0.06828430782070427
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_		KYLVLANM(1)L		KYLVLANM(100)L	0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.8099365234375	2	540.809728	1079.6049	0.52451	0.00028366	-0.19261	-0.00010416	0.3319	0.0001795	540.8095535086472	57.287	0.57644	57.355	57.12	57.697	0.068375					55	21	4	0	0	0	0.0042692	1	12395	12395		99.799	70.717	1	614370			9701	4141	6456	6503	13210	13210		250			0.06828430782070427
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_		KYLVLANM(1)L		KYLVLANM(72)L	0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.81005859375	2	540.809728	1079.6049	0.32891	0.00017788	-0.23443	-0.00012678	0.094484	5.1098E-05	540.8095686177392	60.346	1.6357	60.419	59.799	61.435	0.073421					133	57	3	0	0	0	0.0084662	2	13226	13226;13365		71.922	49.186	1	357650			9702	4141	6456	6503	13211;13212	13211		250			0.06828430782070427
KYLVLANML	9	Unmodified	_KYLVLANML_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.8121337890625	2	532.81227	1063.60999	0.55283	0.00029456	-0.16594	-8.8416E-05	0.38689	0.00020614	532.8119837731066	69.307	0.77339	69.307	69.132	69.905	0					38	26	3	0	0	0	0.0074933	1	16194	16194		74.929	53.182	1	285830			9703	4141	6456	6504	13213	13213					0.08072734644701995
KYLVLANML	9	Unmodified	_KYLVLANML_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2689208984375	2	532.81227	1063.60999	0.37039	0.00019735	-0.025266	-1.3462E-05	0.34513	0.00018389	532.812087494955	69.264	0.64169	69.326	69.168	69.81	0.062126					31	23	2	0	0	0	0.089428	1	16038	16038		47.749	28.492	1	393560			9704	4141	6456	6504	13214	13214					0.08072734644701995
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.31591796875	2	595.316232	1188.61791	-0.33924	-0.00020195	0.40158	0.00023907	0.062339	3.7111E-05	595.3163686482341	42.867	0.91871	42.867	42.626	43.544	0					76	31	4	0	0	0	0.0039507	4	8137	8131;8137;8179;8226		103.82	76.195	1	377290			9705	1188	6457	6505	13215;13216;13217;13218	13216					0.031145851658493484
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3168334960938	2	595.316232	1188.61791	-0.29406	-0.00017506	0.47505	0.00028281	0.181	0.00010775	595.3164850956007	42.757	0.64868	42.847	42.65	43.299	0.089767					64	24	4	0	0	0	0.0043231	2	7977	7977;8023		97.741	68.659	1	400050			9706	1188	6457	6505	13219;13220	13219					0.031145851658493484
KYMDIEFDF	9	Oxidation (M)	_KYM(Oxidation (M))DIEFDF_		KYM(1)DIEFDF		KYM(120)DIEFDF	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.2683715820312	2	612.26809	1222.52163	0.51517	0.00031542	-0.17179	-0.00010518	0.34338	0.00021024	612.2680706401488	65.742	1.4673	65.742	65.372	66.84	0					147	55	5	0	0	0	0.0011184	4	15096	15052;15096;15143;15193		121.53	73.188	1	4131100			9707	2405;4184	6458	6506	13221;13222;13223;13224	13222		151			-0.08073350456425032
KYMDIEFDF	9	Oxidation (M)	_KYM(Oxidation (M))DIEFDF_		KYM(1)DIEFDF		KYM(120)DIEFDF	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.2683715820312	2	612.26809	1222.52163	0.29962	0.00018345	-0.0022139	-1.3555E-06	0.29741	0.0001821	612.2681942692913	67.477	3.7131	67.477	66.506	70.219	0					364	138	5	0	0	0	0.0011184	11	15601	15558;15601;15649;15696;15742;15788;15836;15886;15932;15984;16033		121.53	54.19	1	5313200			9708	2405;4184	6458	6506	13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235	13226		151			-0.08073350456425032
KYMDIEFDF	9	Oxidation (M)	_KYM(Oxidation (M))DIEFDF_		KYM(1)DIEFDF		KYM(130)DIEFDF	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.268310546875	2	612.26809	1222.52163	0.4187	0.00025636	-0.070996	-4.3469E-05	0.34771	0.00021289	612.2681737408748	65.676	1.3001	65.743	65.45	66.75	0.066872					148	51	5	0	0	0	0.00087611	6	14941	14891;14941;14983;15027;15075;15151		125.53	83.435	1	4581200			9709	2405;4184	6458	6506	13236;13237;13238;13239;13240;13241	13237		151			-0.08073350456425032
KYMDIEFDF	9	Oxidation (M)	_KYM(Oxidation (M))DIEFDF_		KYM(1)DIEFDF		KYM(120)DIEFDF	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.2683715820312	2	612.26809	1222.52163	0.52252	0.00031992	-0.044768	-2.741E-05	0.47775	0.00029251	612.2681452016532	67.302	3.9134	67.367	66.65	70.563	0.065071					361	147	4	0	0	0	0.0011184	11	15435	15392;15435;15480;15530;15575;15620;15662;15708;15756;15802;15851		121.53	54.19	1	6126100			9710	2405;4184	6458	6506	13242;13243;13244;13245;13246;13247;13248;13249;13250;13251;13252	13243		151			-0.08073350456425032
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.270751953125	2	604.270632	1206.52671	0.4543	0.00027452	-0.17972	-0.0001086	0.27458	0.00016592	604.2705252902634	73.963	1.3731	73.963	73.716	75.09	0					125	50	4	0	0	0	1.3975E-05	3	17634	17569;17588;17634		145.13	107.16	1	5497600			9711	2405;4184	6458	6507	13253;13254;13255	13255					-0.06829046593793464
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.270751953125	2	604.270632	1206.52671	0.70457	0.00042575	-0.33924	-0.00020499	0.36533	0.00022076	604.270419657165	73.922	1.5226	73.971	73.748	75.271	0.048546					131	55	4	0	0	0	5.8571E-07	3	17452	17409;17452;17543		157.8	99.116	1	4251200			9712	2405;4184	6458	6507	13256;13257;13258	13257					-0.06829046593793464
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_		KYM(1)DINFDF		KYM(140)DINFDF	0	0	1		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	nc|ENSG00000136286|B0I1T2-2|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7684326171875	2	604.768257	1207.52196	0.72641	0.00043931	-0.41106	-0.0002486	0.31535	0.00019071	604.7679860392545	63.382	1.8351	63.382	62.521	64.356	0					200	66	5	0	0	0	0.00021732	5	14376	14331;14376;14425;14468;14513		136.39	22.206	1	5413900			9713	4670;2788	6459	6508	13259;13260;13261;13262;13263	13260		181			-0.07349930736563692
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_		KYM(1)DINFDF		KYM(150)DINFDF	0	0	1		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	nc|ENSG00000136286|B0I1T2-2|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7684326171875	2	604.768257	1207.52196	0.73866	0.00044672	-0.29499	-0.0001784	0.44367	0.00026832	604.7680300234168	63.294	1.8588	63.366	62.777	64.636	0.072701					184	70	4	0	0	0	7.2619E-06	4	14183	14183;14227;14271;14324		151.48	22.907	1	4684400			9714	4670;2788	6459	6508	13264;13265;13266;13267	13264		181			-0.07349930736563692
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_		KYM(1)DINFDF		KYM(150)DINFDF	0	0	1		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	nc|ENSG00000136286|B0I1T2-2|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7686767578125	2	604.768257	1207.52196	0.81512	0.00049296	-0.24736	-0.0001496	0.56775	0.00034336	604.7681014233997	65.119	4.7096	65.188	64.172	68.882	0.068916					521	176	5	0	0	0	3.8022E-06	5	14791	14703;14749;14791;14836;14876		154.75	30.832	1	6613600			9715	4670;2788	6459	6508	13268;13269;13270;13271;13272	13270		181			-0.07349930736563692
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_					0	0	1		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	nc|ENSG00000136286|B0I1T2-2|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	604.768257	1207.52196	0.87116	0.00052685	-0.35666	-0.0002157	0.5145	0.00031115	604.7680169850589	65.122	5.2188	65.122	63.946	69.165	0	-0.032646	-6.7295E-05	NaN	154.75	550	193	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6282000			9716	4670;2788	6459	6508				181			-0.07349930736563692
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	nc|ENSG00000136286|B0I1T2-2|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.77099609375	2	596.7708	1191.52705	0.42393	0.00025299	-0.095294	-5.6868E-05	0.32863	0.00019612	596.7708132796542	67.287	2.9222	67.287	67.011	69.933	0					230	107	5	0	0	0	0.0056336	1	15677	15677		80.676	1.249	1	4473500			9717	4670;2788	6459	6509	13273	13273					-0.06105626873932124
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	nc|ENSG00000136286|B0I1T2-2|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.77099609375	2	596.7708	1191.52705	0.038005	2.2681E-05	0.46261	0.00027607	0.50061	0.00029875	596.7710898382938	71.826	1.8918	71.826	71.53	73.422	0					168	66	5	0	0	0	4.1025E-13	5	16978	16978;17020;17078;17132;17401		189.73	53.339	1	4916400			9718	4670;2788	6459	6509	13274;13275;13276;13277;13278	13274					-0.06105626873932124
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	nc|ENSG00000136286|B0I1T2-2|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7708129882812	2	596.7708	1191.52705	0.5109	0.00030489	-0.093477	-5.5784E-05	0.41743	0.00024911	596.7707929070647	67.246	2.0704	67.311	67.074	69.145	0.065063					197	75	5	0	0	0	0.0042616	2	15520	15381;15520		100.09	2.3497	1	5407000			9719	4670;2788	6459	6509	13279;13280	13280					-0.06105626873932124
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	nc|ENSG00000136286|B0I1T2-2|MYO1G;ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7711181640625	2	596.7708	1191.52705	-0.015635	-9.3304E-06	0.53302	0.00031809	0.51738	0.00030876	596.7711666190061	71.774	1.7825	71.83	71.515	73.298	0.055931					155	62	5	0	0	0	3.2925E-10	8	16802	16752;16802;16852;16901;16960;17025;17164;17219		176.43	51.389	1	6583800			9720	4670;2788	6459	6509	13281;13282;13283;13284;13285;13286;13287;13288	13282					-0.06105626873932124
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(150)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7683715820312	2	604.768257	1207.52196	0.31832	0.00019251	-0.13916	-8.4161E-05	0.17916	0.00010835	604.7681615475473	59.097	1.2548	59.097	58.762	60.017	0					165	47	5	0	0	0	1.0657E-05	3	13066	13066;13113;13286		148.27	41.328	1	8040700			9721	5326	6460	6510	13289;13290;13291	13289		301			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(170)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7685546875	2	604.768257	1207.52196	0.63555	0.00038436	-0.29296	-0.00017717	0.34258	0.00020718	604.7681499122726	60.791	3.2224	60.791	59.719	62.941	0					373	130	5	0	0	0	1.8205E-09	19	13592	13389;13440;13542;13592;13641;13684;13734;13775;13816;13858;13901;13944;13987;14036;14079;14119;14168;14189;14232		173.69	43.914	1	10414000			9722	5326	6460	6510	13292;13293;13294;13295;13296;13297;13298;13299;13300;13301;13302;13303;13304;13305;13306;13307;13308;13309;13310	13295		301			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(62)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7686767578125	2	604.768257	1207.52196	0.72641	0.00043931	-0.41106	-0.0002486	0.31535	0.00019071	604.7679860392545	63.382	1.8351	63.382	62.521	64.356	0					200	66	5	0	0	0	0.015341	2	14659	14561;14659		61.602	8.1979	1	5413900			9723	5326	6460	6510	13311;13312	13312		301			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(160)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7684936523438	2	604.768257	1207.52196	0.51447	0.00031113	-0.24011	-0.00014521	0.27435	0.00016592	604.7680850270469	58.966	1.3428	59.037	58.721	60.063	0.070477					174	52	5	0	0	0	8.8922E-09	5	12891	12891;12935;12986;13119;13169		160.69	42.621	1	7134700			9724	5326	6460	6510	13313;13314;13315;13316;13317	13313		301			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(160)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7683715820312	2	604.768257	1207.52196	0.57575	0.0003482	-0.17735	-0.00010726	0.39841	0.00024094	604.768199960262	60.72	3.1838	60.794	59.78	62.964	0.073421					438	129	5	0	0	0	8.8922E-09	20	13395	13235;13244;13301;13347;13395;13438;13480;13524;13569;13616;13656;13694;13737;13779;13820;13869;13906;13923;13977;14042		160.69	42.621	1	8749200			9725	5326	6460	6510	13318;13319;13320;13321;13322;13323;13324;13325;13326;13327;13328;13329;13330;13331;13332;13333;13334;13335;13336;13337	13322		301			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(57)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7684936523438	2	604.768257	1207.52196	0.73866	0.00044672	-0.29499	-0.0001784	0.44367	0.00026832	604.7680300234168	63.294	1.8588	63.366	62.777	64.636	0.072701					184	70	4	0	0	0	0.02143	2	14517	14139;14517		57.249	7.7219	1	4684400			9726	5326	6460	6510	13338;13339	13339		301			-0.07349930736563692
KYMDVQFDF	9	Unmodified	_KYMDVQFDF_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7711181640625	2	596.7708	1191.52705	0.42393	0.00025299	-0.095294	-5.6868E-05	0.32863	0.00019612	596.7708132796542	67.287	2.9222	67.287	67.011	69.933	0					230	107	5	0	0	0	7.2615E-09	3	15587	15545;15587;15632		163.69	18.248	1	4473500			9727	5326	6460	6511	13340;13341;13342	13341					-0.06105626873932124
KYMDVQFDF	9	Unmodified	_KYMDVQFDF_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7711791992188	2	596.7708	1191.52705	0.5109	0.00030489	-0.093477	-5.5784E-05	0.41743	0.00024911	596.7707929070647	67.246	2.0704	67.311	67.074	69.145	0.065063					197	75	5	0	0	0	0.00021732	3	15424	15424;15472;15539		136.39	7.0389	1	5407000			9728	5326	6460	6511	13343;13344;13345	13343					-0.06105626873932124
KYMEDYHQF	9	Unmodified	_KYMEDYHQF_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.84991455078125	3	420.849979	1259.52811	0.41481	0.00017457	-0.70499	-0.0002967	-0.29018	-0.00012212	420.8497350870241	38.729	0.69598	38.729	38.514	39.21	0					50	26	3	0	0	0	0.11936	2	6906	6906;6913		28.234	20.757	1	81342			9729	2050	6461	6512	13346;13347	13346					-0.09127412505040411
KYMEDYHQF	9	Unmodified	_KYMEDYHQF_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.7716064453125	2	630.771331	1259.52811	0.094541	5.9634E-05	-0.13919	-8.7795E-05	-0.044646	-2.8161E-05	630.771309939321	38.706	0.40852	38.706	38.567	38.976	0					33	15	3	0	0	0	0.26084	1	6908	6908		11.495	7.1655	1	47736			9730	2050	6461	6512	13348	13348					-0.09127412505040411
KYMEDYHQF	9	Unmodified	_KYMEDYHQF_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.7713012695312	2	630.771331	1259.52811	0.33228	0.00020959	-0.3599	-0.00022701	-0.027617	-1.742E-05	630.7710948630538	38.594	0.34884	38.681	38.536	38.885	0.08688					28	12	3	0	0	0	0.31275	1	6744	6744		7.609	6.127	1	54573			9731	2050	6461	6512	13349	13349					-0.09127412505040411
KYMEDYHQF	9	Unmodified	_KYMEDYHQF_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.8498229980469	3	420.849979	1259.52811	0.1611	6.7799E-05	-0.40252	-0.0001694	-0.24142	-0.0001016	420.84983691030214	38.613	0.58232	38.7	38.488	39.07	0.08688					51	21	4	0	0	0	0.15472	1	6752	6752		23.801	16.324	1	129550			9732	2050	6461	6512	13350	13350					-0.09127412505040411
KYMETIEKL	9	Unmodified	_KYMETIEKL_					0	0	0		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;PPP1R21-GTF2A1L|3|fusion;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.8092651367188	2	577.809925	1153.6053	-0.4504	-0.00026025	0.10807	6.2446E-05	-0.34233	-0.0001978	577.8099768782955	42.23	0.36953	42.23	42.084	42.454	0					30	12	3	0	0	0	0.2779	1	7959	7959		9.544	4.647	1	92266			9733	3864	6462	6513	13351	13351					0.03463805711317036
KYMETIEKL	9	Unmodified	_KYMETIEKL_					0	0	0		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;PPP1R21-GTF2A1L|3|fusion;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.8098754882812	2	577.809925	1153.6053	-0.23102	-0.00013349	-0.24338	-0.00014063	-0.4744	-0.00027411	577.8097526478696	42.137	0.38833	42.227	42.072	42.461	0.089764					24	14	2	0	0	0	0.19861	1	7805	7805		18.721	5.8486	1	94394			9734	3864	6462	6513	13352	13352					0.03463805711317036
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.3621215820312	2	648.362659	1294.71076	0.17276	0.00011201	-0.080462	-5.2169E-05	0.092296	5.9841E-05	648.362505405352	52.875	0.54922	52.875	52.704	53.254	0					30	20	2	0	0	0	0.06744	2	11177	11177;11238		53.404	46.302	1	269520			9735	5377	6463	6514	13353;13354	13353					0.0751976662756988
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.57745361328125	3	432.577531	1294.71076	0.34963	0.00015124	-0.45791	-0.00019808	-0.10828	-4.684E-05	432.57733357144093	52.865	0.71615	52.865	52.645	53.361	0					66	27	4	0	0	0	0.22821	1	11186	11186		20.871	15.003	1	506610			9736	5377	6463	6514	13355	13355					0.0751976662756988
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.5773620605469	3	432.577531	1294.71076	0.20276	8.7709E-05	-0.53864	-0.000233	-0.33588	-0.00014529	432.5772971178399	52.834	0.61275	52.9	52.693	53.306	0.06543					65	27	4	0	0	0	0.19318	1	11031	11031		19.987	14.119	1	527050			9737	5377	6463	6514	13356	13356					0.0751976662756988
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3619995117188	2	648.362659	1294.71076	0.21408	0.0001388	-0.59045	-0.00038283	-0.37637	-0.00024403	648.3621804155315	52.845	0.4268	52.911	52.722	53.149	0.065426					30	18	2	0	0	0	0.033776	2	11034	11034;11097		61.602	46.353	1	209650			9738	5377	6463	6514	13357;13358	13357					0.0751976662756988
KYMQKQWKELI	11	Unmodified	_KYMQKQWKELI_					0	0	0			REV__ENSG00000204947|ENST00000378061|ZNF425	REV__ENSG00000204947|ENST00000378061|ZNF425	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.5299072265625	3	498.942762	1493.80646	0.22254	0.00011103	3.1451	0.0015692	3.3676	0.0016802	499.27932975462863	51.216	0.67089	51.216	50.981	51.652	0					42	22	3	0	0	0	0.31097	1	10674	10674		1.3296	0.11481	1	131170	+		9739	10961	6464	6515	13359	13359					0.0793049474784766
KYMTAVVKL	9	Oxidation (M)	_KYM(Oxidation (M))TAVVKL_		KYM(1)TAVVKL		KYM(57)TAVVKL	0	0	1		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.8099975585938	2	534.809728	1067.6049	0.2405	0.00012862	0.34293	0.0001834	0.58343	0.00031203	534.8098687814243	36.167	1.3461	36.167	35.872	37.219	0					126	52	4	0	0	0	0.02143	1	6124	6124		57.249	13.477	1	493290			9740	588	6465	6516	13360	13360		31			0.07380430782109215
KYMTAVVKL	9	Oxidation (M)	_KYM(Oxidation (M))TAVVKL_		KYM(1)TAVVKL		KYM(72)TAVVKL	0	0	1		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.809814453125	2	534.809728	1067.6049	0.34848	0.00018637	-0.12971	-6.937E-05	0.21877	0.000117	534.8096354669036	37.687	2.6358	37.687	37.086	39.722	0					216	96	4	0	0	0	0.0085356	1	6596	6596		71.708	13.986	1	377880			9741	588	6465	6516	13361	13361		31			0.07380430782109215
KYMTAVVKL	9	Oxidation (M)	_KYM(Oxidation (M))TAVVKL_					0	0	1		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	534.809728	1067.6049	0.42994	0.00022994	0.20876	0.00011164	0.6387	0.00034158	534.8099151643555	36.091	1.2809	36.172	35.878	37.159	0.081715	0.0028404	-0.00012654	NaN	57.249	96	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381480			9742	588	6465	6516				31			0.07380430782109215
KYMTAVVKL	9	Unmodified	_KYMTAVVKL_					0	0	0		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.8121337890625	2	526.81227	1051.60999	-0.1537	-8.0973E-05	0.29203	0.00015384	0.13832	7.287E-05	526.8123135882067	43.333	1.9903	43.333	42.454	44.444	0					124	69	4	0	0	0	0.0045978	2	8285	8285;8330		87.258	29.536	1	551170			9743	588	6465	6517	13362;13363	13362					0.08624734644718046
KYMTAVVKL	9	Unmodified	_KYMTAVVKL_					0	0	0		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.8121948242188	2	526.81227	1051.60999	-0.12242	-6.4495E-05	0.33501	0.00017649	0.21258	0.00011199	526.8123880945951	43.2	0.81171	43.29	43.116	43.928	0.089764					66	29	4	0	0	0	0.0085356	2	8124	8124;8173		71.708	31.758	1	484240			9744	588	6465	6517	13364;13365	13364					0.08624734644718046
KYMYFTVVM	9	2 Oxidation (M)	_KYM(Oxidation (M))YFTVVM(Oxidation (M))_		KYM(1)YFTVVM(1)		KYM(60)YFTVVM(60)	0	0	2		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.2854614257812	2	607.285228	1212.5559	0.8166	0.00049591	-0.35243	-0.00021402	0.46417	0.00028189	607.28500109272	54.845	0.89449	54.845	54.573	55.467	0					88	34	3	0	0	0	0.017478	2	11774	11774;11821		60.074	37.338	1	389490			9745	2962	6466	6518	13366;13367	13366		188;189			-0.041872255691487226
KYMYFTVVM	9	2 Oxidation (M)	_KYM(Oxidation (M))YFTVVM(Oxidation (M))_		KYM(1)YFTVVM(1)		KYM(52)YFTVVM(52)	0	0	2		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.2857666015625	2	607.285228	1212.5559	0.64586	0.00039222	-0.064225	-3.9003E-05	0.58163	0.00035322	607.2850032198457	55.824	0.9474	55.824	55.38	56.328	0					63	33	3	0	0	0	0.029291	1	12086	12086		51.63	40.806	1	270050			9746	2962	6466	6518	13368	13368		188;189			-0.041872255691487226
KYMYFTVVM	9	2 Oxidation (M)	_KYM(Oxidation (M))YFTVVM(Oxidation (M))_		KYM(1)YFTVVM(1)		KYM(46)YFTVVM(46)	0	0	2		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2861328125	2	607.285228	1212.5559	0.83814	0.00050899	0.087107	5.2899E-05	0.92525	0.00056189	607.2850746572174	53.865	0.73097	53.93	53.717	54.448	0.065166					55	27	3	0	0	0	0.03918	1	11330	11330		45.7	34.876	1	316280			9747	2962	6466	6518	13369	13369		188;189			-0.041872255691487226
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2799072265625	2	552.279649	1102.54475	0.49675	0.00027434	0.39935	0.00022055	0.8961	0.0004949	552.2798153951335	55.845	1.2769	55.845	55.608	56.885	0					93	46	4	0	0	0	8.9172E-06	1	12105	12105		149.91	97.646	1	2556700			9748	4527	6467	6519	13370	13370					-0.0024254355678294814
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2798461914062	2	552.279649	1102.54475	0.47487	0.00026226	0.41892	0.00023136	0.89378	0.00049362	552.2797673117237	55.802	1.2632	55.867	55.62	56.883	0.065128					101	46	4	0	0	0	5.0762E-05	1	11959	11959		139.14	77.781	1	2204400			9749	4527	6467	6519	13371	13371					-0.0024254355678294814
KYNDNFFGL	9	Unmodified	_KYNDNFFGL_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2694091796875	2	559.269281	1116.52401	0.7328	0.00040983	-0.3767	-0.00021068	0.35609	0.00019915	559.2689961620732	65.402	0.61949	65.402	65.112	65.732	0					76	22	4	0	0	0	0.00052937	1	15026	15026		103.42	67.375	1	2413900			9750	442	6468	6520	13372	13372					-0.029591339364287705
KYNDNFFGL	9	Unmodified	_KYNDNFFGL_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2694702148438	2	559.269281	1116.52401	0.62828	0.00035138	-0.26586	-0.00014869	0.36242	0.00020269	559.2690642949731	65.341	0.62727	65.41	65.134	65.761	0.068916					83	24	4	0	0	0	1.583E-05	1	14861	14861		103.42	74.933	1	2954800			9751	442	6468	6520	13373	13373					-0.029591339364287705
KYNDTFWKEF	10	Unmodified	_KYNDTFWKEF_					0	0	0		ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1	ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENST00000551983.1_1_12:104335630-104337190:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.88751220703125	3	459.88731	1376.6401	0.34556	0.00015892	-0.093659	-4.3073E-05	0.2519	0.00011585	459.8871861095786	56.931	0.67606	56.931	56.702	57.378	0					61	24	4	0	0	0	0.31243	2	12456	12406;12456		21.241	16.835	1	408590			9752	4170	6469	6521	13374;13375	13375					-0.03315235156401286
KYNDTFWKEF	10	Unmodified	_KYNDTFWKEF_					0	0	0		ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1	ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENST00000551983.1_1_12:104335630-104337190:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.8872985839844	3	459.88731	1376.6401	0.21645	9.9542E-05	-0.0069509	-3.1966E-06	0.2095	9.6345E-05	459.88724333599146	56.844	0.54821	56.911	56.683	57.231	0.066452					57	19	4	0	0	0	0.27582	2	12239	12239;12303		25.155	15.911	1	466470			9753	4170	6469	6521	13376;13377	13376					-0.03315235156401286
KYNEKFFK	8	Unmodified	_KYNEKFFK_					0	0	0			REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2799072265625	2	552.297842	1102.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.035	1	56.035	55.535	56.535	0								0	0	0	0.385	1	12152	12152		19.439	3.5918	1		+		9754	13295	6470	6522	13378	13378					0.033943333399292897
KYNFIPEVW	9	Unmodified	_KYNFIPEVW_					0	0	0		nc|ENSG00000183765|O96017-11|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	nc|ENSG00000183765|O96017-11|CHEK2	nc|ENSG00000183765|O96017-11|CHEK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8236083984375	2	598.310949	1194.60735	-0.02069	-1.2379E-05	-0.14258	-8.531E-05	-0.16328	-9.7689E-05	598.3105636051214	72.897	0.3373	72.897	72.747	73.084	0					17	11	2	0	0	0	0.27332	2	17295	17295;17316		10.074	2.7847	1	84330			9755	134	6471	6523	13379;13380	13379					0.017826025114118238
KYNHLNLFLF	10	Unmodified	_KYNHLNLFLF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.9079284667969	3	436.908157	1307.70264	0.25767	0.00011258	-0.21107	-9.2217E-05	0.046598	2.0359E-05	436.9079563487807	68.389	0.5733	68.453	68.221	68.794	0.063507					65	21	4	0	0	0	0.45632	2	15796	15796;15844		3.5871	0	1	282170			9756	1364	6472	6524	13381;13382	13381					0.061099557024363094
KYNLINEYF	9	Unmodified	_KYNLINEYF_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3069458007812	2	602.305864	1202.59717	0.69115	0.00041628	0.69463	0.00041838	1.3858	0.00083467	602.3061148949564	65.774	0.88883	65.841	65.615	66.504	0.066872					54	33	2	0	0	0	0.0042616	1	14968	14968		100.09	67.785	1	696250			9757	3539	6473	6525	13383	13383					0.0039799478618078865
KYNLINEYF	9	Unmodified	_KYNLINEYF_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	602.305864	1202.59717	0.83763	0.00050451	0.5704	0.00034356	1.408	0.00084807	602.3061551044923	65.802	0.70396	65.802	65.598	66.302	0	-0.019419	-7.4892E-05	NaN	100.09	47	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	879620			9758	3539	6473	6525							0.0039799478618078865
KYNPVYKI	8	Unmodified	_KYNPVYKI_					0	0	0			REV__tr|U7T3K0|U7T3K0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00436PE=4SV=1	REV__tr|U7T3K0|U7T3K0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00436PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.272216796875	2	512.794935	1023.57532	0.2088	0.00010707	-0.1976	-0.00010133	0.011198	5.7421E-06	512.794713598667	36.316	0.7892	36.316	36.128	36.917	0					56	29	3	0	0	0	0.3576	1	6323	6323		0.69038	0	1	107110	+		9759	13281	6474	6526	13384	13384					0.06447234828260662
KYPASSSVF	9	Unmodified	_KYPASSSVF_					0	0	0		ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2532958984375	2	493.2531	984.491647	-0.1609	-7.9363E-05	0.90667	0.00044722	0.74577	0.00036785	493.25339906750855	40.801	0.40943	40.89	40.743	41.153	0.089645					38	16	3	0	0	0	0.16392	1	7417	7417		22.736	7.898	1	69040			9760	5711	6475	6527	13385	13385					-0.0012192133942789951
KYPASTVQI	9	Unmodified	_KYPASTVQI_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7814025878906	2	503.782025	1005.5495	-0.60249	-0.00030352	-0.14227	-7.1672E-05	-0.74476	-0.0003752	503.78188906887243	41.442	0.80389	41.442	41.197	42.001	0					52	28	3	0	0	0	0.11816	1	7731	7731		28.495	9.2375	1	135070			9761	1254	6476	6528	13386	13386					0.04694340585979262
KYPASTVQI	9	Unmodified	_KYPASTVQI_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7816162109375	2	503.782025	1005.5495	-0.40952	-0.00020631	-0.12103	-6.0972E-05	-0.53055	-0.00026728	503.7819196111839	41.392	0.75648	41.482	41.211	41.967	0.089764					53	29	3	0	0	0	0.11816	1	7581	7581		28.495	4.4739	1	136880			9762	1254	6476	6528	13387	13387					0.04694340585979262
KYPCGTISRE	10	Unmodified	_KYPCGTISRE_					0	0	0		ENST00000529358.1_1_11:58912354-58916208:+|nuORF;ENST00000527629.5_1_11:58912335-58916208:+|nuORF	ENST00000529358.1_1_11:58912354-58916208:+|nuORF	ENST00000529358.1_1_11:58912354-58916208:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.286376953125	2	577.287148	1152.55974	0.33195	0.00019163	1.5698	0.00090621	1.9017	0.0010978	577.287774158665	77.227	0.77272	77.227	77.034	77.807	0					54	33	2	0	0	0	0.37637	1	18647	18647		14.405	0.8975	1	851020			9763	7006	6477	6529	13388	13388					-0.010434197510676313
KYPDIISRI	9	Unmodified	_KYPDIISRI_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7955322265625	2	552.824224	1103.63389	0.29219	0.00016153	4.2631	0.0023567	4.5553	0.0025183	552.8256349264404	51.121	0.17249	51.121	51.006	51.179	0					11	5	3	0	0	0	0.24584	1	10625	10625		12.873	1.3779	1	75874			9764	1474	6478	6530	13389	13389					0.08622291402753035
KYPDLANFW	9	Unmodified	_KYPDLANFW_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.2884521484375	2	577.287474	1152.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.185	1	72.185	71.685	72.685	0								0	0	0	0.037785	1	17072	17072		53.404	29.614	1				9765	3799	6479	6531	13390	13390					-0.009782570397419477
KYPDLANFW	9	Unmodified	_KYPDLANFW_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3050537109375	2	577.287474	1152.5604	0.31819	0.00018369	-2.929	-0.0016909	-2.6108	-0.0015072	577.2858162458051	51.828	0.58524	51.896	51.681	52.267	0.067169					34	20	3	0	0	0	0.29576	1	10773	10773		7.2892	0.56607	1	209600			9766	3799	6479	6531	13391	13391					-0.009782570397419477
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.81884765625	2	543.818941	1085.62333	-0.098525	-5.358E-05	-0.068579	-3.7294E-05	-0.1671	-9.0874E-05	543.818844482082	43.636	3.0055	43.636	43.179	46.184	0					251	106	5	0	0	0	0.0045224	7	8369	8324;8369;8412;8455;8501;8554;8618		90.135	59.498	1	2151700			9767	4385	6480	6532	13392;13393;13394;13395;13396;13397;13398	13393					0.08394308748324875
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.8189697265625	2	543.818941	1085.62333	0.029657	1.6128E-05	0.06275	3.4125E-05	0.092407	5.0253E-05	543.8189183334363	43.535	1.35	43.624	43.162	44.512	0.088924					141	47	4	0	0	0	0.0047429	6	8211	8162;8211;8256;8298;8345;8402		83.429	49.027	1	1929500			9768	4385	6480	6532	13399;13400;13401;13402;13403;13404	13400					0.08394308748324875
KYPDVIQEL	9	Unmodified	_KYPDVIQEL_					0	0	0		nc|ENSG00000158158|Q6P4Q7-2|CNNM4;ENSG00000158158|ENST00000377075|CNNM4	nc|ENSG00000158158|Q6P4Q7-2|CNNM4	nc|ENSG00000158158|Q6P4Q7-2|CNNM4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.8004150390625	2	552.800414	1103.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.254	1	59.254	58.754	59.754	0								0	0	0	0.15463	1	13128	13128		24.882	6.5085	1				9769	7540	6481	6533	13405	13405					0.03862592411906007
KYPENDLFRKL	11	Unmodified	_KYPENDLFRKL_					0	0	0		KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.9290771484375	3	474.92951	1421.7667	-0.47244	-0.00022438	0.19784	9.3961E-05	-0.2746	-0.00013041	474.9294363653466	45.18	0.67907	45.18	44.968	45.647	0					72	23	4	0	0	0	0.21249	2	8862	8835;8862		28.271	25.427	1	309360			9770	797	6482	6534	13406;13407	13407					0.07268691068702537
KYPENDLFRKL	11	Unmodified	_KYPENDLFRKL_					0	0	0		KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.9292297363281	3	474.92951	1421.7667	-0.24275	-0.00011529	0.22565	0.00010717	-0.017095	-8.1191E-06	474.9294212988209	45.069	0.54181	45.157	44.964	45.505	0.087543					55	20	4	0	0	0	0.21249	2	8727	8676;8727		28.271	23.223	1	319220			9771	797	6482	6534	13408;13409	13409					0.07268691068702537
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.81396484375	2	585.813325	1169.6121	0.59308	0.00034744	-0.14027	-8.2173E-05	0.45281	0.00026526	585.8136797313299	75.938	9.3483	75.938	74.961	84.309	0					1163	361	6	0	0	0	1.8728E-05	56	18149	18060;18109;18149;18188;18227;18269;18310;18355;18400;18445;18494;18536;18578;18623;18663;18709;18753;18802;18846;18887;18933;18980;19022;19067;19120;19172;19222;19269;19317;19363;19405;19457;19503;19548;19594;19642;19682;19727;19773;19819;19861;19905;19947;19991;20042;20090;20140;20188;20232;20488;20543;20592;20638;20682;20726;20771		140.63	84.456	1	394090000			9772	5550	6483	6535	13410;13411;13412;13413;13414;13415;13416;13417;13418;13419;13420;13421;13422;13423;13424;13425;13426;13427;13428;13429;13430;13431;13432;13433;13434;13435;13436;13437;13438;13439;13440;13441;13442;13443;13444;13445;13446;13447;13448;13449;13450;13451;13452;13453;13454;13455;13456;13457;13458;13459;13460;13461;13462;13463;13464;13465	13412					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.813232421875	2	585.813325	1169.6121	0.53288	0.00031217	0.011535	6.7572E-06	0.54441	0.00031892	585.8131075760232	86.339	1.487	86.339	85.482	86.969	0					112	62	3	0	0	0	0.095436	3	21191	21149;21191;21307		33.445	17.598	1	513230			9773	5550	6483	6535	13466;13467;13468	13467					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	0.73195	0.00042879	0.31668	0.00018552	1.0486	0.0006143	585.8131011178828	92.066	2.7146	92.066	91.183	93.898	0					234	103	4	0	0	0	0.11816	5	22917	22917;22980;23280;23352;23403		28.495	12.647	1	1198100			9774	5550	6483	6535	13469;13470;13471;13472;13473	13469					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.813232421875	2	585.813325	1169.6121	0.67608	0.00039606	0.041057	2.4052E-05	0.71714	0.00042011	585.8132370974033	93.997	0.31998	93.997	93.898	94.218	0					25	18	2	0	0	0	0.20358	1	23745	23745		18.146	6.5061	1	184750			9775	5550	6483	6535	13474	13474					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.81396484375	2	585.813325	1169.6121	0.58882	0.00034494	0.11782	6.902E-05	0.70663	0.00041396	585.8130433869964	94.745	1.0257	94.745	94.149	95.175	0					96	44	3	0	0	0	0.1646	5	23794	23794;23844;23914;23970;24026		22.658	7.1161	1	170940			9776	5550	6483	6535	13475;13476;13477;13478;13479	13475					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8126831054688	2	585.813325	1169.6121	0.46834	0.00027436	-0.71868	-0.00042101	-0.25034	-0.00014665	585.8127535974958	95.602	0.35002	95.602	95.541	95.891	0					24	15	2	0	0	0	0.26104	1	24230	24230		11.495	2.7493	1	342700			9777	5550	6483	6535	13480	13480					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	0.54026	0.00031649	-0.075889	-4.4457E-05	0.46437	0.00027203	585.8131650902069	96.215	0.55457	96.215	95.826	96.38	0					51	29	2	0	0	0	0.27266	1	24409	24409		10.151	2.8613	1	143930			9778	5550	6483	6535	13481	13481					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8126831054688	2	585.813325	1169.6121	0.68017	0.00039845	-0.24462	-0.0001433	0.43555	0.00025515	585.8129996533715	96.584	1.1058	96.584	96.332	97.438	0					98	52	2	0	0	0	0.19307	3	24455	24455;24508;24760		19.362	7.7216	1	185560			9779	5550	6483	6535	13482;13483;13484	13482					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8132934570312	2	585.813325	1169.6121	0.80439	0.00047123	-0.41811	-0.00024493	0.38629	0.00022629	585.8128984152632	97.866	1.0102	97.866	97.461	98.471	0					85	51	2	0	0	0	0.14444	6	24804	24804;24857;24903;24947;24990;25037		24.991	9.4009	1	140340			9780	5550	6483	6535	13485;13486;13487;13488;13489;13490	13485					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8138427734375	2	585.813325	1169.6121	0.7528	0.000441	-0.19716	-0.0001155	0.55564	0.0003255	585.8132146500172	98.764	0.69486	98.764	98.471	99.166	0					57	44	2	0	0	0	0.22083	1	25193	25193		16.149	3.6176	1	139450			9781	5550	6483	6535	13491	13491					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2802734375	2	585.813325	1169.6121	0.71867	0.000421	-0.050937	-2.984E-05	0.66773	0.00039116	585.813287188449	99.175	0.81763	99.175	98.841	99.659	0					75	52	2	0	0	0	0.2546	4	25379	25302;25357;25379;25406		12.241	4.2055	1	122730			9782	5550	6483	6535	13492;13493;13494;13495	13494					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	0.66106	0.00038726	0.077392	4.5337E-05	0.73845	0.00043259	585.8131779555924	100.07	0.61994	100.07	99.817	100.44	0					68	34	3	0	0	0	0.20966	5	25563	25519;25546;25563;25605;25635		17.443	10.153	1	152730			9783	5550	6483	6535	13496;13497;13498;13499;13500	13498					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	0.61115	0.00035802	-0.38131	-0.00022338	0.22984	0.00013464	585.8129846915157	100.79	1.345	100.79	100.24	101.58	0					113	80	2	0	0	0	0.22083	7	25746	25644;25699;25746;25814;25860;25904;25982		16.149	4.9514	1	125210			9784	5550	6483	6535	13501;13502;13503;13504;13505;13506;13507	13503					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	0.47644	0.0002791	0.2781	0.00016291	0.75454	0.00044202	585.813339748222	102.46	1.3416	102.46	101.98	103.32	0					141	92	2	0	0	0	0.22083	9	26233	26233;26239;26271;26309;26388;26435;26474;26531;26533		16.149	6.264	1	145920			9785	5550	6483	6535	13508;13509;13510;13511;13512;13513;13514;13515;13516	13508					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8130493164062	2	585.813325	1169.6121	0.42629	0.00024973	0.0096037	5.626E-06	0.4359	0.00025536	585.8132161419353	103.55	0.33748	103.55	103.3	103.64	0					41	29	2	0	0	0	0.26104	2	26644	26578;26644		11.495	4.2055	1	94756			9786	5550	6483	6535	13517;13518	13518					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	0.3843	0.00022513	-0.10819	-6.3377E-05	0.27611	0.00016175	585.8131733503061	104.24	0.75996	104.24	103.64	104.4	0					114	76	2	0	0	0	0.17428	5	26849	26701;26739;26746;26788;26849		21.537	9.8967	1	133650			9787	5550	6483	6535	13519;13520;13521;13522;13523	13523					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8138427734375	2	585.813325	1169.6121	0.33084	0.00019381	0.17228	0.00010093	0.50313	0.00029474	585.8134429202983	104.83	0.57655	104.83	104.55	105.13	0					75	54	2	0	0	0	0.2546	2	26992	26960;26992		12.241	3.4485	1	100090			9788	5550	6483	6535	13524;13525	13525					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8138427734375	2	585.813325	1169.6121	0.19022	0.00011143	0.36512	0.00021389	0.55534	0.00032533	585.8134521214353	107.15	1.6939	107.15	105.91	107.6	0					298	162	2	0	0	0	0.14444	12	27577	27385;27397;27425;27461;27496;27535;27577;27619;27652;27688;27722;27762		24.991	12.75	1	223330			9789	5550	6483	6535	13526;13527;13528;13529;13530;13531;13532;13533;13534;13535;13536;13537	13532					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.812744140625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.438	1	84.438	83.938	84.938	0								0	0	0	0.010655	1	20812	20812		67.838	22.139	1				9790	5550	6483	6535	13538	13538					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.947	1	87.947	87.447	88.447	0								0	0	0	0.1539	1	21883	21883		24.991	4.5373	1				9791	5550	6483	6535	13539	13539					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8140869140625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.118	1	88.118	87.618	88.618	0								0	0	0	0.099298	1	21935	21935		33.445	10.709	1				9792	5550	6483	6535	13540	13540					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.293	1	88.293	87.793	88.793	0								0	0	0	0.16956	1	21987	21987		22.658	5.7158	1				9793	5550	6483	6535	13541	13541					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.676	1	88.676	88.176	89.176	0								0	0	0	0.084126	1	22101	22101		38.176	8.335	1				9794	5550	6483	6535	13542	13542					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.349	1	89.349	88.849	89.849	0								0	0	0	0.1539	1	22304	22304		24.991	5.734	1				9795	5550	6483	6535	13543	13543					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.509	1	89.509	89.009	90.009	0								0	0	0	0.19168	1	22353	22353		19.362	3.5148	1				9796	5550	6483	6535	13544	13544					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.81298828125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.844	1	89.844	89.344	90.344	0								0	0	0	0.17708	1	22454	22454		21.537	6.6987	1				9797	5550	6483	6535	13545	13545					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.81396484375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.21	1	90.21	89.71	90.71	0								0	0	0	0.1539	1	22567	22567		24.991	3.2443	1				9798	5550	6483	6535	13546	13546					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8140869140625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.28	1	105.28	104.78	105.78	0								0	0	0	0.27152	1	27116	27116		4.897	0.95262	1				9799	5550	6483	6535	13547	13547					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.44	1	105.44	104.94	105.94	0								0	0	0	0.25837	1	27164	27164		7.609	1.8771	1				9800	5550	6483	6535	13548	13548					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8141479492188	2	585.813325	1169.6121	0.738	0.00043233	-0.28015	-0.00016412	0.45785	0.00026821	585.8136105367748	75.798	9.4128	75.842	74.967	84.38	0.044037					1162	365	6	0	0	0	0.00015475	53	17987	17903;17949;17987;18028;18066;18108;18155;18204;18246;18288;18338;18382;18431;18470;18511;18556;18602;18645;18688;18733;18780;18821;18863;18908;18961;19010;19057;19108;19156;19203;19246;19290;19333;19380;19429;19474;19527;19577;19623;19673;19727;19777;19828;19873;19922;19970;20018;20067;20317;20378;20437;20486;20531		137.42	72.755	1	404440000			9801	5550	6483	6535	13549;13550;13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565;13566;13567;13568;13569;13570;13571;13572;13573;13574;13575;13576;13577;13578;13579;13580;13581;13582;13583;13584;13585;13586;13587;13588;13589;13590;13591;13592;13593;13594;13595;13596;13597;13598;13599;13600;13601	13551					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8130493164062	2	585.813325	1169.6121	0.86539	0.00050696	-0.56948	-0.00033361	0.29591	0.00017335	585.8127104650913	84.581	2.525	84.604	84.453	86.978	0.023125					218	115	2	0	0	0	0.034936	8	20671	20671;20716;20773;20818;20859;20941;20984;21041		47.594	21.063	1	541010			9802	5550	6483	6535	13602;13603;13604;13605;13606;13607;13608;13609	13602					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	0.77806	0.0004558	0.21834	0.00012791	0.99641	0.00058371	585.8130547977717	92.028	2.9244	92.064	91.046	93.97	0.03653					223	112	4	0	0	0	0.15482	2	23130	22773;23130		23.79	6.6769	1	947070			9803	5550	6483	6535	13610;13611	13611					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.813720703125	2	585.813325	1169.6121	0.69157	0.00040513	-0.39409	-0.00023086	0.29749	0.00017427	585.8128840975666	96.19	0.89083	96.23	95.581	96.472	0.039772					74	46	2	0	0	0	0.26104	2	24238	24238;24285		11.495	4.2055	1	194890			9804	5550	6483	6535	13612;13613	13612					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	0.91771	0.0005376	-0.52997	-0.00031046	0.38774	0.00022714	585.8128968339862	97.264	1.2389	97.305	96.562	97.801	0.040855					87	61	2	0	0	0	0.26104	2	24583	24583;24668		11.495	4.2055	1	142470			9805	5550	6483	6535	13614;13615	13614					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3162841796875	2	585.813325	1169.6121	0.92955	0.00054454	-0.39393	-0.00023077	0.53562	0.00031378	585.813012572013	98.014	0.9525	98.056	97.683	98.636	0.041794					79	49	2	0	0	0	0.15482	5	24849	24711;24759;24819;24849;24912		23.79	11.258	1	111810			9806	5550	6483	6535	13616;13617;13618;13619;13620	13619					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	0.8881	0.00052026	-0.08045	-4.7129E-05	0.80765	0.00047313	585.8130035446288	99.405	0.49962	99.448	99.154	99.654	0.042831					53	32	2	0	0	0	0.22083	2	25175	25175;25223		16.149	4.5088	1	113870			9807	5550	6483	6535	13621;13622	13621					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	0.8655	0.00050702	-0.28033	-0.00016422	0.58517	0.0003428	585.8130814097067	100.11	0.41541	100.16	99.924	100.34	0.042839					34	21	2	0	0	0	0.22083	2	25439	25394;25439		16.149	4.5088	1	98345			9808	5550	6483	6535	13623;13624	13624					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8132934570312	2	585.813325	1169.6121	0.84711	0.00049625	-0.52056	-0.00030495	0.32655	0.0001913	585.8129440537374	101.1	1.1405	101.14	100.26	101.4	0.042831					103	67	2	0	0	0	0.19307	4	25487	25487;25580;25651;25714		19.362	8.538	1	118210			9809	5550	6483	6535	13625;13626;13627;13628	13625					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	0.81933	0.00047998	-0.29031	-0.00017007	0.52902	0.00030991	585.8130399069731	101.51	0.68709	101.56	101.33	102.02	0.042656					72	54	2	0	0	0	0.28472	1	25851	25851		8.7454	3.4485	1	90395			9810	5550	6483	6535	13629	13629					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.813232421875	2	585.813325	1169.6121	0.78028	0.0004571	-0.13897	-8.1409E-05	0.64132	0.00037569	585.8131420877238	102.77	0.88029	102.82	102.32	103.2	0.040909					100	68	2	0	0	0	0.26104	9	26089	26089;26121;26169;26209;26247;26262;26300;26309;26314		11.495	4.2055	1	99957			9811	5550	6483	6535	13630;13631;13632;13633;13634;13635;13636;13637;13638	13630					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8150634765625	2	585.813325	1169.6121	0.76626	0.00044888	0.15422	9.0342E-05	0.92048	0.00053923	585.8135174956137	103.34	0.38347	103.38	103.16	103.54	0.037903					65	39	2	0	0	0	0.24021	3	26341	26341;26372;26385		13.906	3.5147	1	110930			9812	5550	6483	6535	13639;13640;13641	13639					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3139038085938	2	585.813325	1169.6121	0.75418	0.00044181	-0.34808	-0.00020391	0.40611	0.0002379	585.812921133246	103.66	0.2896	103.7	103.54	103.83	0.03791					49	29	2	0	0	0	0.24767	2	26474	26474;26488		13.042	4.2971	1	109370			9813	5550	6483	6535	13642;13643	13642					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.813325	1169.6121	0.73429	0.00043016	-0.28698	-0.00016811	0.44731	0.00026204	585.813093704842	104.38	0.69303	104.42	103.86	104.55	0.034004					107	67	2	0	0	0	0.31086	1	26684	26684		5.2969	0.54088	1	217190			9814	5550	6483	6535	13644	13644					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8139038085938	2	585.813325	1169.6121	0.7167	0.00041985	-0.38503	-0.00022556	0.33166	0.00019429	585.8130112335921	104.84	0.44044	104.87	104.63	105.07	0.034004					76	47	2	0	0	0	0.22083	3	26783	26783;26818;26846		16.149	8.8599	1	95383			9815	5550	6483	6535	13645;13646;13647	13645					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	0.70365	0.00041221	-0.33477	-0.00019611	0.36888	0.00021609	585.8130315040919	105.17	0.5563	105.2	104.95	105.51	0.033997					104	59	2	0	0	0	0.2359	4	26969	26852;26867;26923;26969		14.405	7.1161	1	105340			9816	5550	6483	6535	13648;13649;13650;13651	13651					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	0.68151	0.00039924	-0.04315	-2.5278E-05	0.63836	0.00037396	585.8132372373914	105.85	0.41695	105.88	105.8	106.22	0.029739					73	47	2	0	0	0	0.26104	1	27156	27156		11.495	4.2055	1	117750			9817	5550	6483	6535	13652	13652					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8150634765625	2	585.813325	1169.6121	0.66806	0.00039136	-0.35659	-0.0002089	0.31146	0.00018246	585.8130973878614	106.34	0.26651	106.37	106.22	106.48	0.029739					39	28	2	0	0	0	0.22083	2	27201	27201;27213		16.149	4.9514	1	96149			9818	5550	6483	6535	13653;13654	13653					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.315185546875	2	585.813325	1169.6121	0.66543	0.00038982	0.19707	0.00011545	0.8625	0.00050526	586.3150292715638	106.44	0.29395	106.47	106.38	106.68	0.025711					48	32	2	0	0	0	0.26104	2	27250	27250;27283		11.495	3.4485	1	149710			9819	5550	6483	6535	13655;13656	13655					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.813720703125	2	585.813325	1169.6121	0.64992	0.00038073	-0.090409	-5.2963E-05	0.55951	0.00032777	585.8132020136776	107.23	0.99146	107.25	106.63	107.62	0.025711					153	100	2	0	0	0	0.10802	6	27399	27320;27367;27399;27437;27470;27508		30.703	15.455	1	212600			9820	5550	6483	6535	13657;13658;13659;13660;13661;13662	13659					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8126220703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.414	1	84.437	83.937	84.937	0.023125								0	0	0	0.084126	1	20646	20646		38.176	12.776	1				9821	5550	6483	6535	13663	13663					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.623	1	87.653	87.153	88.153	0.030037								0	0	0	0.12135	1	21622	21622		29.841	11.694	1				9822	5550	6483	6535	13664	13664					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.97	1	88	87.5	88.5	0.030037								0	0	0	0.13038	1	21726	21726		28.495	9.2375	1				9823	5550	6483	6535	13665	13665					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.135	1	88.165	87.665	88.665	0.030037								0	0	0	0.1539	1	21775	21775		24.991	5.734	1				9824	5550	6483	6535	13666	13666					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.299	1	88.329	87.829	88.829	0.030037								0	0	0	0.19168	1	21825	21825		19.362	2.4196	1				9825	5550	6483	6535	13667	13667					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8140258789062	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.7	1	88.733	88.233	89.233	0.032257								0	0	0	0.11176	1	21948	21948		31.268	7.2478	1				9826	5550	6483	6535	13668	13668					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.191	1	89.224	88.724	89.724	0.032257								0	0	0	0.19168	1	22098	22098		19.362	5.4559	1				9827	5550	6483	6535	13669	13669					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.349	1	89.381	88.881	89.881	0.032257								0	0	0	0.21325	1	22146	22146		16.149	2.2431	1				9828	5550	6483	6535	13670	13670					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.673	1	89.708	89.208	90.208	0.034065								0	0	0	0.21325	1	22245	22245		16.149	3.9084	1				9829	5550	6483	6535	13671	13671					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.844	1	89.878	89.378	90.378	0.034065								0	0	0	0.17708	1	22297	22297		21.537	4.5947	1				9830	5550	6483	6535	13672	13672					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.141	1	90.175	89.675	90.675	0.034065								0	0	0	0.13619	1	22389	22389		27.629	0.74515	1				9831	5550	6483	6535	13673	13673					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.278	1	94.316	93.816	94.816	0.038086								0	0	0	0.21325	1	23646	23646		16.149	3.1066	1				9832	5550	6483	6535	13674	13674					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.449	1	94.487	93.987	94.987	0.038086								0	0	0	0.19168	1	23698	23698		19.362	2.4196	1				9833	5550	6483	6535	13675	13675					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.684	1	94.722	94.222	95.222	0.038086								0	0	0	0.21325	1	23770	23770		16.149	6.766	1				9834	5550	6483	6535	13676	13676					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.81298828125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.852	1	94.891	94.391	95.391	0.038551								0	0	0	0.22495	1	23821	23821		14.405	3.5815	1				9835	5550	6483	6535	13677	13677					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8131103515625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.365	1	95.404	94.904	95.904	0.038872								0	0	0	0.21325	1	23978	23978		16.149	2.2431	1				9836	5550	6483	6535	13678	13678					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.812744140625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.521	1	96.56	96.06	97.06	0.039772								0	0	0	0.21325	1	24332	24332		16.149	4.5088	1				9837	5550	6483	6535	13679	13679					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.618	1	98.66	98.16	99.16	0.041931								0	0	0	0.21325	1	24972	24972		16.149	3.6176	1				9838	5550	6483	6535	13680	13680					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.88	1	99.923	99.423	100.42	0.042839								0	0	0	0.21325	1	25354	25354		16.149	3.9084	1				9839	5550	6483	6535	13681	13681					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8129272460938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.84	1	101.88	101.38	102.38	0.042656								0	0	0	0.20678	1	25944	25944		17.113	2.2746	1				9840	5550	6483	6535	13682	13682					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.9	1	103.94	103.44	104.44	0.03791								0	0	0	0.23593	1	26552	26552		12.241	2.8575	1				9841	5550	6483	6535	13683	13683					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	585.813325	1169.6121	0.94173	0.00055168	-1.0429	-0.00061096	-0.10119	-5.9277E-05	585.8124525580474	84.6	1.1054	84.6	84.377	85.482	0	-0.001713	-0.00027587	NaN	47.594	120	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	737310			9842	5550	6483	6535							0.03407486654191416
KYPENFFLLR	10	Unmodified	_KYPENFFLLR_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.91162109375	3	442.911679	1325.71321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.216	1	60.289	59.789	60.789	0.073421								0	0	0	0.33485	1	13287	13287		6.2344	1.8282	1				9843	5550	6484	6536	13684	13684					0.06337938356887207
KYPGFLLNNF	10	Unmodified	_KYPGFLLNNF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8252563476562	2	606.824224	1211.63389	0.70838	0.00042987	0.8531	0.00051768	1.5615	0.00094754	606.8247146232017	71.163	0.58356	71.163	71.001	71.584	0					41	19	4	0	0	0	0.0010484	2	16756	16756;16809		89.401	63.133	1	324310			9844	1228	6485	6537	13685;13686	13685					0.036542914027450024
KYPGFLLNNF	10	Unmodified	_KYPGFLLNNF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	606.824224	1211.63389	0.90148	0.00054704	0.69222	0.00042006	1.5937	0.0009671	606.824431909361	71.104	0.49478	71.163	70.997	71.492	0.058578	0.00013475	-0.00013558	NaN	89.401	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331660			9845	1228	6485	6537							0.036542914027450024
KYPGTQTRP	9	Unmodified	_KYPGTQTRP_					0	0	0		SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|38|3|sense	SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|38|3|sense	SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|38|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2824096679688	2	524.282723	1046.55089	-0.18035	-9.4554E-05	-0.069104	-3.623E-05	-0.24945	-0.00013078	524.282576943692	27.227	0.46266	27.227	27.016	27.479	0					87	30	4	0	0	0	0.33978	1	3537	3537		1.4819	0.68827	1	234560			9846	13408	6486	6538	13687	13687					0.02947974674748366
KYPHLVAGA	9	Unmodified	_KYPHLVAGA_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2715148925781	2	478.271627	954.528701	-0.3775	-0.00018055	-0.21491	-0.00010278	-0.5924	-0.00028333	478.27158481687275	43.616	1.2389	43.616	43.263	44.502	0					108	43	3	0	0	0	0.19241	1	8362	8362		19.439	1.304	1	581960			9847	4682	6487	6539	13688	13688					0.04961794996984281
KYPHLVAGA	9	Unmodified	_KYPHLVAGA_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.27142333984375	2	478.271627	954.528701	-0.28949	-0.00013846	-0.081067	-3.8772E-05	-0.37056	-0.00017723	478.2716360033821	43.513	1.2098	43.602	43.186	44.396	0.088921					101	42	4	0	0	0	0.19241	1	8257	8257		19.439	1.2926	1	580010			9848	4682	6487	6539	13689	13689					0.04961794996984281
KYPHYFPLL	9	Unmodified	_KYPHYFPLL_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.323974609375	2	589.32386	1176.63317	0.56536	0.00033318	-0.14685	-8.6541E-05	0.41851	0.00024664	589.3235718939547	60.571	1.0503	60.571	60.31	61.361	0					106	37	4	0	0	0	0.0010237	4	13552	13499;13552;13604;13655		123.1	79.324	1	975830			9849	4477	6488	6540	13690;13691;13692;13693	13691					0.05191496753695901
KYPHYFPLL	9	Unmodified	_KYPHYFPLL_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7554931640625	2	589.32386	1176.63317	0.43474	0.0002562	-3.2873	-0.0019373	-2.8525	-0.0016811	589.8230167822998	61.887	0.27769	61.887	61.763	62.041	0					14	11	2	0	0	0	0.2491	1	13937	13937		8.5933	3.8373	1	86272			9850	4477	6488	6540	13694	13694					0.05191496753695901
KYPHYFPLL	9	Unmodified	_KYPHYFPLL_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.323974609375	2	589.32386	1176.63317	0.41767	0.00024614	-0.067722	-3.991E-05	0.34995	0.00020623	589.3237077985506	60.487	0.88836	60.56	60.283	61.171	0.073421					80	30	4	0	0	0	0.0021353	4	13371	13327;13371;13426;13485		114.94	71.171	1	814650			9851	4477	6488	6540	13695;13696;13697;13698	13696					0.05191496753695901
KYPKVWEGF	9	Unmodified	_KYPKVWEGF_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598364.1_1_19:46318820-46320367:-|nuORF;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3057861328125	2	577.305667	1152.59678	0.19996	0.00011544	-0.078569	-4.5359E-05	0.12139	7.0078E-05	577.3055914509484	51.79	1.2	51.79	51.529	52.729	0					78	41	4	0	0	0	0.03472	2	10835	10835;10946		47.749	26.212	1	435030			9852	2310	6489	6541	13699;13700	13699					0.026586198569930275
KYPKVWEGF	9	Unmodified	_KYPKVWEGF_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598364.1_1_19:46318820-46320367:-|nuORF;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3051147460938	2	577.305667	1152.59678	0.32407	0.00018709	-0.11268	-6.505E-05	0.21139	0.00012204	577.3055125761625	51.699	0.8395	51.768	51.556	52.395	0.069874					68	31	4	0	0	0	0.088609	1	10668	10668		34.932	13.395	1	515870			9853	2310	6489	6541	13701	13701					0.026586198569930275
KYPLLISRI	9	Unmodified	_KYPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.8531494140625	2	551.852784	1101.69102	0.33223	0.00018334	-0.096451	-5.3227E-05	0.23578	0.00013012	551.8527025254573	53.168	0.81494	53.168	52.729	53.544	0					56	32	2	0	0	0	0.27266	1	11290	11290		10.151	2.8613	1	109320			9854	1963	6490	6542	13702	13702					0.14423758679117782
KYPLLISRI	9	Unmodified	_KYPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.8530883789062	2	551.852784	1101.69102	0.53548	0.0002955	-0.065884	-3.6358E-05	0.46959	0.00025915	551.8526598946787	53.266	0.69615	53.331	52.786	53.482	0.06543					52	32	2	0	0	0	0.29334	1	11163	11163		7.609	3.6646	1	75149			9855	1963	6490	6542	13703	13703					0.14423758679117782
KYPLLLDNI	9	Unmodified	_KYPLLLDNI_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8218383789062	2	544.82115	1087.62775	0.43203	0.00023538	-0.41845	-0.00022798	0.013578	7.3976E-06	544.8208648881863	68.42	0.93375	68.42	68.049	68.983	0					47	34	2	0	0	0	0.085487	3	15900	15900;15924;16003		35.612	8.389	1	140350			9856	5253	6491	6543	13704;13705;13706	13704					0.08743773171227076
KYPLLLDNI	9	Unmodified	_KYPLLLDNI_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.821044921875	2	544.82115	1087.62775	0.43141	0.00023504	-0.014098	-7.6808E-06	0.41731	0.00022736	544.8210657081801	68.356	0.73353	68.42	68.089	68.822	0.063507					44	27	2	0	0	0	0.054729	2	15760	15760;15823		42.312	8.8676	1	116500			9857	5253	6491	6543	13707;13708	13707					0.08743773171227076
KYPLLLESI	9	Unmodified	_KYPLLLESI_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.3246459960938	2	538.323525	1074.6325	0.57112	0.00030745	0.20266	0.0001091	0.77378	0.00041655	538.3238626813762	69.707	0.64201	69.707	69.319	69.961	0					36	21	2	0	0	0	0.032194	1	16326	16326		49.554	17.249	1	105290			9858	2591	6492	6544	13709	13709					0.09816657313990618
KYPLLLESI	9	Unmodified	_KYPLLLESI_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.3235473632812	2	538.323525	1074.6325	0.48731	0.00026233	0.58823	0.00031666	1.0755	0.00057899	538.323730282396	69.593	0.61517	69.655	69.358	69.973	0.062126					32	21	2	0	0	0	0.032194	1	16161	16161		49.554	17.249	1	123120			9859	2591	6492	6544	13710	13710					0.09816657313990618
KYPLLLKEL	9	Unmodified	_KYPLLLKEL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;TIAM2|p.L1253F|1|0.25|ENSG00000146426|chr6:155248104-155248104|C/T|missense_variant;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8548583984375	2	558.854993	1115.69543	0.6926	0.00038706	-0.30977	-0.00017312	0.38283	0.00021394	558.854767052444	54.632	0.64408	54.632	54.467	55.112	0					47	28	2	0	0	0	0.26104	1	11760	11760		11.495	0	1	159590			9860	2237	6493	6545	13711	13711					0.14221223102049407
KYPLLLKEL	9	Unmodified	_KYPLLLKEL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;TIAM2|p.L1253F|1|0.25|ENSG00000146426|chr6:155248104-155248104|C/T|missense_variant;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	558.854993	1115.69543	0.79013	0.00044157	-0.44432	-0.00024831	0.34581	0.00019326	558.854719327826	54.82	0.47702	54.885	54.612	55.089	0.065128	0.12681	-9.1151E-05	NaN	11.495	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96851			9861	2237	6493	6545							0.14221223102049407
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1	ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000595897.5_1_19:42402462-42407822:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.831787109375	2	537.831517	1073.64848	0.61183	0.00032906	0.086533	4.654E-05	0.69837	0.0003756	537.8314389612453	67.197	1.6356	67.197	66.688	68.324	0					122	61	4	0	0	0	0.0034419	2	15596	15596;15644		106.94	44.367	1	691760			9862	850	6494	6546	13712;13713	13712					0.11460363550895636
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1	ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000595897.5_1_19:42402462-42407822:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.831787109375	2	537.831517	1073.64848	0.9084	0.00048857	-0.25964	-0.00013964	0.64876	0.00034892	537.831259183481	67.2	1.2717	67.265	66.749	68.02	0.065063					109	43	3	0	0	0	0.0046221	1	15444	15444		86.332	38.583	1	622590			9863	850	6494	6546	13714	13714					0.11460363550895636
KYPLNLYLL	9	Unmodified	_KYPLNLYLL_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8394775390625	2	568.839342	1135.66413	0.38979	0.00022173	-0.15409	-8.765E-05	0.23571	0.00013408	568.8391626287521	74.718	0.71905	74.718	74.37	75.09	0					83	26	4	0	0	0	0.0043613	4	17853	17795;17809;17853;17905		96.285	40.558	1	1763500			9864	3602	6495	6547	13715;13716;13717;13718	13717					0.10172650067920586
KYPLNLYLL	9	Unmodified	_KYPLNLYLL_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.3414916992188	2	568.839342	1135.66413	0.39384	0.00022403	0.48706	0.00027706	0.8809	0.00050109	568.8394744838557	75.191	0.41416	75.191	75.09	75.504	0					23	15	2	0	0	0	0.14091	1	17961	17961		25.399	8.2864	1	227030			9865	3602	6495	6547	13719	13719					0.10172650067920586
KYPLNLYLL	9	Unmodified	_KYPLNLYLL_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8394165039062	2	568.839342	1135.66413	0.3662	0.00020831	-0.076367	-4.344E-05	0.28983	0.00016487	568.8392417872859	74.639	1.1056	74.687	74.396	75.502	0.048546					93	39	4	0	0	0	0.004452	3	17704	17653;17704;17755		92.822	44.476	1	1426400			9866	3602	6495	6547	13720;13721;13722	13721					0.10172650067920586
KYPLNLYLLF	10	Unmodified	_KYPLNLYLLF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3739013671875	2	642.373549	1282.73255	0.1711	0.00010991	0.56163	0.00036077	0.73273	0.00047068	642.3736505000551	87.152	0.59533	87.152	87.008	87.603	0					40	23	2	0	0	0	0.095946	2	21652	21652;21704		45.7	26.443	1	315260			9867	3602	6496	6548	13723;13724	13723					0.10248894647770612
KYPLNLYLLF	10	Unmodified	_KYPLNLYLLF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3734130859375	2	642.373549	1282.73255	0.084512	5.4288E-05	0.17036	0.00010943	0.25487	0.00016372	642.3734117635443	87.086	0.50277	87.114	86.999	87.501	0.027573					30	20	2	0	0	0	0.14584	1	21459	21459		39.95	25.111	1	314610			9868	3602	6496	6548	13725	13725					0.10248894647770612
KYPLQNLGEE	10	Unmodified	_KYPLQNLGEE_					0	0	0			REV__nc|ENSG00000094841|Q96BW1-3|UPRT	REV__nc|ENSG00000094841|Q96BW1-3|UPRT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2603759765625	2	595.806228	1189.5979	0.26595	0.00015845	3.695	0.0022015	3.961	0.00236	596.3113672597012	76.284	0.44153	76.284	76.173	76.615	0					24	16	2	0	0	0	0.31712	1	18410	18410		6.7232	1.9672	1	483290	+		9869	8336	6497	6549	13726	13726					0.010687894352258809
KYPNLLNQL	9	Unmodified	_KYPNLLNQL_					0	0	0		ENST00000528400.1_1_8:42939784-42940422:+|nuORF;ENST00000530657.1_1_11:85906626-85907241:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000528400.1_1_8:42939784-42940422:+|nuORF	ENST00000528400.1_1_8:42939784-42940422:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.8165893554688	2	551.816399	1101.61824	0.56758	0.0003132	-0.48193	-0.00026593	0.085657	4.7267E-05	551.816053375779	60.583	1.2426	60.583	59.867	61.11	0					87	44	3	0	0	0	0.00054058	1	13504	13504		88.954	56.648	1	268280			9870	4297	6498	6550	13727	13727					0.07150004885693306
KYPNLLNQL	9	Unmodified	_KYPNLLNQL_					0	0	0		ENST00000528400.1_1_8:42939784-42940422:+|nuORF;ENST00000530657.1_1_11:85906626-85907241:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000528400.1_1_8:42939784-42940422:+|nuORF	ENST00000528400.1_1_8:42939784-42940422:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.816162109375	2	551.816399	1101.61824	0.36866	0.00020343	-0.55695	-0.00030733	-0.18829	-0.0001039	551.8161421109913	60.577	1.1125	60.65	59.94	61.053	0.073421					68	39	2	0	0	0	0.036979	1	13339	13339		65.235	32.93	1	198370			9871	4297	6498	6550	13728	13728					0.07150004885693306
KYPNVDARL	9	Unmodified	_KYPNVDARL_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2568969726562	2	538.298373	1074.58219	0.29957	0.00016126	0.38263	0.00020597	0.68221	0.00036723	538.2984888721384	37.145	0.5636	37.145	36.776	37.34	0					35	21	2	0	0	0	0.25162	1	6420	6420		8.1555	3.3995	1	43392			9872	3350	6499	6551	13729	13729					0.04788547708835722
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2979125976562	2	566.29731	1130.58007	0.24656	0.00013963	0.014155	8.0161E-06	0.26071	0.00014764	566.2976922816742	77.265	2.8958	77.265	76.756	79.652	0					481	107	5	0	0	0	1.2541E-09	16	18682	18561;18606;18643;18682;18729;18772;18820;18864;18904;18952;18996;19041;19087;19133;19185;19232		174.73	118.55	1	175770000			9873	2748	6500	6552	13730;13731;13732;13733;13734;13735;13736;13737;13738;13739;13740;13741;13742;13743;13744;13745	13733					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2976684570312	2	566.29731	1130.58007	0.26079	0.00014769	0.74333	0.00042095	1.0041	0.00056863	566.2978298484077	86.216	3.596	86.216	85.482	89.078	0					222	145	3	0	0	0	0.098463	1	22187	22187		32.786	19.743	1	301570			9874	2748	6500	6552	13746	13746					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2986450195312	2	566.29731	1130.58007	0.38543	0.00021827	1.1224	0.00063563	1.5079	0.0008539	566.2979115134375	91.538	1.2107	91.538	91.032	92.243	0					80	44	2	0	0	0	0.12214	2	23142	23068;23142		27.629	10.687	1	186960			9875	2748	6500	6552	13747;13748	13748					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2972412109375	2	566.29731	1130.58007	0.52506	0.00029734	0.058983	3.3402E-05	0.58404	0.00033074	566.2969764201875	98.016	0.71032	98.016	97.461	98.171	0					70	36	3	0	0	0	0.18398	2	24986	24933;24986		20.415	7.883	1	113620			9876	2748	6500	6552	13749;13750	13750					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2976684570312	2	566.29731	1130.58007	0.38061	0.00021554	0.56857	0.00032198	0.94918	0.00053752	566.2975169019875	100.13	0.41016	100.13	99.845	100.26	0					35	20	2	0	0	0	0.18398	2	25596	25520;25596		20.415	11.669	1	119750			9877	2748	6500	6552	13751;13752	13752					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.297119140625	2	566.29731	1130.58007	0.33695	0.00019082	0.36	0.00020386	0.69695	0.00039468	566.2972684563179	100.51	0.91736	100.51	100.16	101.07	0					101	53	2	0	0	0	0.20358	2	25688	25688;25828		18.146	6.9438	1	104170			9878	2748	6500	6552	13753;13754	13753					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2971801757812	2	566.29731	1130.58007	0.28017	0.00015866	0.76142	0.00043119	1.0416	0.00058985	566.2974261985972	101.28	0.90755	101.28	101.07	101.98	0					80	61	2	0	0	0	0.20358	3	25986	25986;26083;26141		18.146	5.1039	1	87106			9879	2748	6500	6552	13755;13756;13757	13755					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2969360351562	2	566.29731	1130.58007	0.22836	0.00012932	-0.11122	-6.2981E-05	0.11714	6.6337E-05	566.2971151037895	102.13	0.45155	102.13	101.95	102.4	0					52	31	2	0	0	0	0.24021	2	26190	26190;26235		13.906	2.2185	1	80251			9880	2748	6500	6552	13758;13759	13758					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.298828125	2	566.29731	1130.58007	0.13756	7.7898E-05	0.78667	0.00044549	0.92423	0.00052339	566.2978021359601	103.49	0.3232	103.49	103.29	103.61	0					37	27	2	0	0	0	0.24021	1	26590	26590		13.906	0.86358	1	81760			9881	2748	6500	6552	13760	13760					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.297607421875	2	566.29731	1130.58007	0.11676	6.6123E-05	0.35183	0.00019924	0.4686	0.00026537	566.297575241337	103.64	0.38721	103.64	103.59	103.98	0					69	41	2	0	0	0	0.23216	2	26673	26673;26707		14.838	6.0349	1	108860			9882	2748	6500	6552	13761;13762	13761					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7753295898438	2	566.29731	1130.58007	0.095943	5.4332E-05	0.27496	0.00015571	0.3709	0.00021004	566.2972795024025	104.05	0.29979	104.05	103.92	104.22	0					56	28	3	0	0	0	0.16392	3	26795	26747;26791;26795		22.736	9.6938	1	67031			9883	2748	6500	6552	13763;13764;13765	13765					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2984008789062	2	566.29731	1130.58007	0.07258	4.1102E-05	0.48969	0.00027731	0.56227	0.00031841	566.2977011315219	104.47	0.40317	104.47	104.21	104.61	0					70	38	2	0	0	0	0.24767	4	26844	26828;26844;26882;26887		13.042	4.2971	1	60962			9884	2748	6500	6552	13766;13767;13768;13769	13767					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2975463867188	2	566.29731	1130.58007	0.049344	2.7944E-05	0.83358	0.00047206	0.88293	0.0005	566.2978539485597	104.67	0.30006	104.67	104.6	104.9	0					43	29	2	0	0	0	0.22083	2	26937	26937;26983		16.149	7.4037	1	52058			9885	2748	6500	6552	13770;13771	13770					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2982788085938	2	566.29731	1130.58007	0.030128	1.7061E-05	0.69883	0.00039575	0.72896	0.00041281	566.2977385430509	105.06	0.42924	105.06	104.79	105.22	0					60	42	2	0	0	0	0.28472	1	27024	27024		8.7454	3.4485	1	81368			9886	2748	6500	6552	13772	13772					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2973022460938	2	566.29731	1130.58007	0.0028543	1.6164E-06	0.27957	0.00015832	0.28243	0.00015994	566.2974395670968	105.34	0.48013	105.34	105.13	105.61	0					72	51	2	0	0	0	0.22083	3	27165	27102;27165;27205		16.149	7.4037	1	96839			9887	2748	6500	6552	13773;13774;13775	13774					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2970581054688	2	566.29731	1130.58007	-0.025802	-1.4611E-05	0.13573	7.6865E-05	0.10993	6.2254E-05	566.2972382369205	105.81	0.489	105.81	105.54	106.03	0					83	49	2	0	0	0	0.24767	3	27240	27240;27279;27317		13.042	4.2971	1	80592			9888	2748	6500	6552	13776;13777;13778	13776					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2972412109375	2	566.29731	1130.58007	-0.046625	-2.6404E-05	0.85212	0.00048256	0.8055	0.00045615	566.2976286548278	106.12	0.15936	106.12	106.02	106.18	0					27	14	2	0	0	0	0.16392	2	27365	27339;27365		22.736	9.6938	1	57809			9889	2748	6500	6552	13779;13780	13780					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2973022460938	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.809	1	93.809	93.309	94.309	0								0	0	0	0.24643	1	23662	23662		10.074	4.3421	1				9890	2748	6500	6552	13781	13781					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2974243164062	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.573	1	97.573	97.073	98.073	0								0	0	0	0.17708	1	24807	24807		21.537	6.9553	1				9891	2748	6500	6552	13782	13782					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2976684570312	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.413	1	98.413	97.913	98.913	0								0	0	0	0.096229	1	25062	25062		34.402	16.255	1				9892	2748	6500	6552	13783	13783					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2979736328125	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.552	1	98.552	98.052	99.052	0								0	0	0	0.16903	1	25105	25105		22.736	8.1546	1				9893	2748	6500	6552	13784	13784					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2977294921875	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.679	1	98.679	98.179	99.179	0								0	0	0	0.23204	1	25144	25144		13.042	3.695	1				9894	2748	6500	6552	13785	13785					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2977905273438	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.841	1	98.841	98.341	99.341	0								0	0	0	0.23593	1	25194	25194		12.241	3.4953	1				9895	2748	6500	6552	13786	13786					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2979736328125	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.988	1	98.988	98.488	99.488	0								0	0	0	0.22786	1	25238	25238		13.906	0	1				9896	2748	6500	6552	13787	13787					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2969970703125	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.49	1	99.49	98.99	99.99	0								0	0	0	0.14533	1	25389	25389		26.268	13.226	1				9897	2748	6500	6552	13788	13788					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2985229492188	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.522	1	99.522	99.022	100.02	0								0	0	0	0.19984	1	25399	25399		18.146	5.1039	1				9898	2748	6500	6552	13789	13789					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.299560546875	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.675	1	99.675	99.175	100.18	0								0	0	0	0.19984	1	25445	25445		18.146	8.7989	1				9899	2748	6500	6552	13790	13790					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.297607421875	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.46	1	102.46	101.96	102.96	0								0	0	0	0.20678	1	26293	26293		17.113	8.3675	1				9900	2748	6500	6552	13791	13791					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2973022460938	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.6	1	102.6	102.1	103.1	0								0	0	0	0.24978	1	26336	26336		9.3831	0.63772	1				9901	2748	6500	6552	13792	13792					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2971801757812	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.27	1	103.27	102.77	103.77	0								0	0	0	0.22786	1	26539	26539		13.906	1.3745	1				9902	2748	6500	6552	13793	13793					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.82666015625	2	566.29731	1130.58007	0.1132	6.4104E-05	1.1209	0.00063475	1.2341	0.00069885	566.2979469552854	89.99	0.96935	89.99	89.078	90.048	0					70	37	3	0	0	0	0.16392	1	22376	22376		32.786	19.743	1	193310			9903	2748	6500	6552	13794	13794					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7872314453125	2	566.29731	1130.58007	0.51707	0.00029281	0.62856	0.00035595	1.1456	0.00064877	566.2975346310029	84.262	1.3632	84.262	82.928	84.291	0					129	48	3	0	0	0	0.13858	1	20436	20436		38.176	26.535	1	555160			9904	2748	6500	6552	13795	13795					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2977294921875	2	566.29731	1130.58007	0.36544	0.00020695	-0.039035	-2.2105E-05	0.3264	0.00018484	566.2976729626548	77.245	3.2735	77.28	76.383	79.656	0.034485					517	121	6	0	0	0	8.9867E-09	17	18566	18361;18389;18439;18477;18522;18566;18611;18653;18699;18745;18787;18829;18870;18913;18962;19018;19063		160.52	108.25	1	222410000			9905	2748	6500	6552	13796;13797;13798;13799;13800;13801;13802;13803;13804;13805;13806;13807;13808;13809;13810;13811;13812	13801					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2979736328125	2	566.29731	1130.58007	0.41345	0.00023414	0.21796	0.00012343	0.63141	0.00035757	566.2974256719828	92.677	2.8295	92.714	91.046	93.875	0.03653					189	106	3	0	0	0	0.13341	5	23038	23038;23109;23237;23289;23333		26.268	13.226	1	337860			9906	2748	6500	6552	13813;13814;13815;13816;13817	13813					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2977294921875	2	566.29731	1130.58007	0.50983	0.00028872	0.53204	0.00030129	1.0419	0.00059001	566.2974675715441	97.394	1.5126	97.435	96.918	98.43	0.040855					140	76	3	0	0	0	0.16392	1	24638	24638		22.736	9.6938	1	99006			9907	2748	6500	6552	13818	13818					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2989501953125	2	566.29731	1130.58007	0.49268	0.00027901	0.2348	0.00013297	0.72748	0.00041197	566.2977122436322	98.55	0.26192	98.592	98.462	98.724	0.041931					33	15	3	0	0	0	0.12214	2	24942	24942;24983		27.629	9.4825	1	95763			9908	2748	6500	6552	13819;13820	13819					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2970581054688	2	566.29731	1130.58007	0.47857	0.00027101	0.11599	6.5687E-05	0.59456	0.0003367	566.2974464341906	98.984	0.56857	99.026	98.724	99.293	0.041939					80	36	3	0	0	0	0.13341	2	25081	25023;25081		26.268	13.226	1	73796			9909	2748	6500	6552	13821;13822	13822					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2975463867188	2	566.29731	1130.58007	0.46266	0.000262	0.72608	0.00041118	1.1887	0.00067318	566.2977644765089	99.556	0.28233	99.599	99.338	99.62	0.042839					30	19	2	0	0	0	0.20358	1	25226	25226		18.146	5.1039	1	83773			9910	2748	6500	6552	13823	13823					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2969360351562	2	566.29731	1130.58007	0.37282	0.00021113	-0.63539	-0.00035982	-0.26256	-0.00014869	566.2970243023354	102.35	0.44267	102.39	102.12	102.56	0.040916					56	30	2	0	0	0	0.16392	2	26067	26067;26107		22.736	9.6938	1	69170			9911	2748	6500	6552	13824;13825	13824					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2974853515625	2	566.29731	1130.58007	0.34096	0.00019308	0.13514	7.6527E-05	0.47609	0.00026961	566.2975168383773	103.37	0.30391	103.4	103.18	103.48	0.03791					45	31	2	0	0	0	0.24767	2	26379	26346;26379		13.042	4.5937	1	80463			9912	2748	6500	6552	13826;13827	13827					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2967529296875	2	566.29731	1130.58007	0.32452	0.00018377	-0.058758	-3.3274E-05	0.26576	0.0001505	566.29732972634	103.66	0.53186	103.7	103.59	104.12	0.03791					73	54	2	0	0	0	0.2125	4	26510	26458;26510;26548;26586		17.113	8.3675	1	135190			9913	2748	6500	6552	13828;13829;13830;13831	13829					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2979736328125	2	566.29731	1130.58007	0.31379	0.0001777	0.32694	0.00018514	0.64073	0.00036284	566.2974905218489	104.21	0.23067	104.25	104.09	104.32	0.03791					38	22	2	0	0	0	0.2125	2	26655	26620;26655		17.113	8.3675	1	81160			9914	2748	6500	6552	13832;13833	13833					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2979736328125	2	566.29731	1130.58007	0.30773	0.00017426	0.32681	0.00018507	0.63453	0.00035934	566.2976202781776	104.42	0.22872	104.45	104.29	104.51	0.033997					35	21	2	0	0	0	0.28472	1	26693	26693		8.7454	3.4485	1	90443			9915	2748	6500	6552	13834	13834					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2974853515625	2	566.29731	1130.58007	0.29336	0.00016613	0.33376	0.00018901	0.62711	0.00035513	566.2974173699517	104.74	0.40584	104.77	104.67	105.07	0.034004					79	44	2	0	0	0	0.16392	3	26771	26771;26806;26842		22.736	9.6938	1	67400			9916	2748	6500	6552	13835;13836;13837	13835					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2980346679688	2	566.29731	1130.58007	0.27818	0.00015753	0.38147	0.00021603	0.65965	0.00037356	566.2975768734087	105.37	0.41392	105.4	105.07	105.49	0.032532					66	44	2	0	0	0	0.16392	3	26932	26889;26932;26970		22.736	9.6938	1	79593			9917	2748	6500	6552	13838;13839;13840	13839					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.295654296875	2	566.29731	1130.58007	0.25981	0.00014713	-0.45156	-0.00025571	-0.19175	-0.00010859	566.2969279580368	105.89	0.25486	105.92	105.76	106.02	0.029739					39	27	2	0	0	0	0.13341	2	27119	27085;27119		26.268	13.226	1	88215			9918	2748	6500	6552	13841;13842	13842					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2976684570312	2	566.29731	1130.58007	0.22942	0.00012992	0.35466	0.00020085	0.58409	0.00033077	566.2974037705268	107.17	1.2715	107.2	106.35	107.62	0.025711					289	132	3	0	0	0	0.10543	5	27468	27331;27368;27401;27468;27504		31.268	26.268	1	171640			9919	2748	6500	6552	13843;13844;13845;13846;13847	13846					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2982177734375	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.303	1	98.345	97.845	98.845	0.041931								0	0	0	0.16041	1	24877	24877		24.021	5.8742	1				9920	2748	6500	6552	13848	13848					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.296875	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.05	1	100.09	99.592	100.59	0.042839								0	0	0	0.24978	1	25405	25405		9.3831	0.035688	1				9921	2748	6500	6552	13849	13849					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2965698242188	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.56	1	100.6	100.1	101.1	0.042839								0	0	0	0.20678	1	25561	25561		17.113	8.3675	1				9922	2748	6500	6552	13850	13850					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.296875	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.57	1	101.62	101.12	102.12	0.042656								0	0	0	0.19984	1	25870	25870		18.146	3.5647	1				9923	2748	6500	6552	13851	13851					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2967529296875	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.96	1	102.01	101.51	102.51	0.042656								0	0	0	0.23204	1	25983	25983		13.042	4.2971	1				9924	2748	6500	6552	13852	13852					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2965698242188	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.1	1	102.14	101.64	102.64	0.042656								0	0	0	0.20678	1	26023	26023		17.113	8.3675	1				9925	2748	6500	6552	13853	13853					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.297607421875	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.57	1	104.6	104.1	105.1	0.034004								0	0	0	0.26517	1	26735	26735		6.2058	3.2105	1				9926	2748	6500	6552	13854	13854					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2978515625	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.54	1	105.57	105.07	106.07	0.029739								0	0	0	0.19984	1	27008	27008		18.146	5.1039	1				9927	2748	6500	6552	13855	13855					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2976684570312	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.99	1	106.02	105.52	106.52	0.029739								0	0	0	0.19984	1	27133	27133		18.146	5.1039	1				9928	2748	6500	6552	13856	13856					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2971801757812	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.12	1	106.15	105.65	106.65	0.029739								0	0	0	0.14533	1	27165	27165		26.268	13.226	1				9929	2748	6500	6552	13857	13857					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2977905273438	2	566.29731	1130.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.29	1	106.32	105.82	106.82	0.029739								0	0	0	0.23593	1	27209	27209		12.241	6.9438	1				9930	2748	6500	6552	13858	13858					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8268432617188	2	566.29731	1130.58007	0.075377	4.2686E-05	0.21885	0.00012394	0.29423	0.00016662	566.7987943365354	89.965	0.4549	89.999	89.604	90.059	0.034065					25	17	2	0	0	0	0.19558	1	22214	22214		26.268	11.686	1	593810			9931	2748	6500	6552	13859	13859					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7572021484375	2	566.29731	1130.58007	0.2316	0.00013115	0.56076	0.00031756	0.79236	0.00044871	566.2975920806033	94.793	1.2411	94.831	93.997	95.238	0.038094					113	53	3	0	0	0	0.23478	1	23877	23877		17.113	2.2746	1	131630			9932	2748	6500	6552	13860	13860					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2315063476562	2	566.29731	1130.58007	-0.021327	-1.2078E-05	0.78116	0.00044237	0.75983	0.00043029	566.2977733726038	90.179	0.68447	90.213	90.059	90.744	0.034065					69	28	3	0	0	0	0.1789	1	22363	22363		29.082	7.3349	1	198250			9933	2748	6500	6552	13861	13861					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8268432617188	2	566.29731	1130.58007	0.21939	0.00012424	1.0015	0.00056716	1.2209	0.0006914	566.2978515491282	88.876	1.1259	88.908	88.598	89.724	0.032265					92	44	3	0	0	0	0.19558	1	22214	22214		26.268	13.226	1	198020			9934	2748	6500	6552	13862	13862					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	566.29731	1130.58007	-0.10177	-5.7633E-05	0.64327	0.00036428	0.5415	0.00030665	566.297617689671	107.1	1.4302	107.1	106.18	107.61	0	-0.052136	0.00015045	NaN	31.268	273	138	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186110			9935	2748	6500	6552							0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	566.29731	1130.58007	0.19151	0.00010845	0.37456	0.00021211	0.56607	0.00032056	566.798984954976	90.14	0.685	90.14	90.077	90.762	0	-0.036846	-0.0002116	NaN	29.082	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544110			9936	2748	6500	6552							0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	566.29731	1130.58007	0.41222	0.00023344	0.76035	0.00043058	1.1726	0.00066402	566.2973352375079	100.92	0.57121	100.96	100.87	101.44	0.042831	-0.161	-8.8589E-07	NaN	18.146	46	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90069			9937	2748	6500	6552							0.020001189710455947
KYPVDLYYL	9	Unmodified	_KYPVDLYYL_					0	0	0		nc|ENSG00000105855|P26012-2|ITGB8;ENSG00000105855|ENST00000222573|ITGB8;ENST00000477859.1_1_7:20406589-20418951:+|nuORF	nc|ENSG00000105855|P26012-2|ITGB8;ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.3132934570312	2	587.313158	1172.61176	0.61592	0.00036174	-0.066212	-3.8887E-05	0.54971	0.00032285	587.3128909568758	68.466	0.83424	68.466	68.211	69.045	0					64	30	3	0	0	0	0.11198	1	15935	15935		29.841	19.767	1	507810			9938	1489;6722	6501	6553	13863	13863					0.032360669343233894
KYPVDLYYL	9	Unmodified	_KYPVDLYYL_					0	0	0		nc|ENSG00000105855|P26012-2|ITGB8;ENSG00000105855|ENST00000222573|ITGB8;ENST00000477859.1_1_7:20406589-20418951:+|nuORF	nc|ENSG00000105855|P26012-2|ITGB8;ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.8151245117188	2	587.313158	1172.61176	0.70723	0.00041537	0.0084456	4.9602E-06	0.71568	0.00042033	587.312882622653	68.399	0.67971	68.463	68.247	68.927	0.063507					54	25	3	0	0	0	0.048027	1	15748	15748		43.772	28.934	1	458040			9939	1489;6722	6501	6553	13864	13864					0.032360669343233894
KYPVLFQRI	9	Unmodified	_KYPVLFQRI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7697143554688	2	582.350409	1162.68626	0.32784	0.00019092	-0.11812	-6.8787E-05	0.20972	0.00012213	582.3502836621306	52.553	0.82833	52.553	52.043	52.872	0					51	28	2	0	0	0	0.2229	1	11089	11089		19.257	11.968	1	120240			9940	4409	6502	6554	13865	13865					0.11142874536380987
KYPVLFQRI	9	Unmodified	_KYPVLFQRI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7699584960938	2	582.350409	1162.68626	0.53519	0.00031167	-0.024394	-1.4206E-05	0.51079	0.00029746	582.3503645417956	52.507	0.60115	52.574	52.203	52.804	0.067169					46	24	2	0	0	0	0.2418	1	10924	10924		13.906	9.15	1	97044			9941	4409	6502	6554	13866	13866					0.11142874536380987
KYQAECSQF	9	Unmodified	_KYQAECSQF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2451782226562	2	552.244949	1102.47534	0.25928	0.00014319	0.45195	0.00024959	0.71123	0.00039277	552.2449020601632	35.818	0.78469	35.818	35.617	36.402	0					50	30	2	0	0	0	0.062017	2	6049	6049;6062		40.725	24.159	1	93474			9942	1110	6503	6555	13867;13868	13867					-0.07179370567837395
KYQAECSQF	9	Unmodified	_KYQAECSQF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2451171875	2	552.244949	1102.47534	0.34506	0.00019056	0.51716	0.0002856	0.86222	0.00047616	552.2448627676015	35.76	1.0093	35.838	35.596	36.605	0.078827					60	39	2	0	0	0	0.09187	3	5904	5904;5974;6019		34.222	17.656	1	90567			9943	1110	6503	6555	13869;13870;13871	13869					-0.07179370567837395
KYQAIGAYYI	10	Unmodified	_KYQAIGAYYI_					0	0	0		PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant;ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1	PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3150024414062	2	595.316232	1188.61791	0.11058	6.5827E-05	-1.6921	-0.0010073	-1.5815	-0.00094151	595.3161216960593	56.593	0.53698	56.593	56.379	56.916	0					50	19	3	0	0	0	0.12944	1	12328	12328		41.84	25.274	1	410980			9944	904	6504	6556	13872	13872					0.031145851658493484
KYQAIGAYYI	10	Unmodified	_KYQAIGAYYI_					0	0	0		PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant;ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1	PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3164672851562	2	595.316232	1188.61791	0.10277	6.1183E-05	-1.8034	-0.0010736	-1.7006	-0.0010124	595.3162328893927	56.552	0.55067	56.618	56.334	56.884	0.066452					41	19	4	0	0	0	0.11192	1	12185	12185		43.858	26.416	1	312080			9945	904	6504	6556	13873	13873					0.031145851658493484
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7821350097656	2	497.782025	993.549496	-0.1742	-8.6716E-05	0.29276	0.00014573	0.11856	5.9017E-05	497.782061916048	40.483	0.84469	40.483	40.281	41.126	0					78	29	4	0	0	0	0.017478	2	7416	7416;7467		60.074	21.898	1	543900			9946	3109	6505	6557	13874;13875	13874					0.052463405860066814
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.78204345703125	2	497.782025	993.549496	-0.044131	-2.1968E-05	0.27303	0.00013591	0.2289	0.00011394	497.78206304990465	40.382	0.74415	40.472	40.237	40.981	0.089645					67	28	4	0	0	0	0.017478	2	7301	7255;7301		60.074	14.053	1	415860			9947	3109	6505	6557	13876;13877	13877					0.052463405860066814
KYQDKIRNI	9	Unmodified	_KYQDKIRNI_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3389282226562	2	589.33803	1176.66151	0.14437	8.508E-05	0.11325	6.6741E-05	0.25761	0.00015182	589.3380142033578	25.488	0.48188	25.583	25.411	25.892	0.094852					92	40	3	0	0	0	0.33978	1	2827	2827		1.4819	0	1	131720	+		9948	8792	6506	6558	13878	13878					0.08024194662993978
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.31512451171875	3	419.524261	1255.55095	-0.46684	-0.00019585	-0.3764	-0.00015791	-0.84323	-0.00035376	419.5240794078368	41.148	0.40848	41.237	41.067	41.475	0.089645					34	14	4	0	0	0	0.25964	1	7568	7568		1.0715	0.29493	1	71945			9949	807	6507	6559	13879	13879					-0.06660070115890449
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	419.524261	1255.55095	-0.28202	-0.00011831	-0.59577	-0.00024994	-0.87779	-0.00036825	419.5239206728018	41.23	0.57432	41.23	41.02	41.594	0	-0.0034901	-0.00016714	NaN	1.0715	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60772			9950	807	6507	6559							-0.06660070115890449
KYQEGLITL	9	Unmodified	_KYQEGLITL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.802490234375	2	532.802957	1063.59136	0.22542	0.0001201	-0.69533	-0.00037047	-0.46991	-0.00025037	532.8026699083408	56.689	1.8378	56.689	56.379	58.217	0					143	66	5	0	0	0	1.1335E-12	4	12345	12345;12393;12438;12709		179.17	75.82	1	10726000			9951	7529	6508	6560	13880;13881;13882;13883	13880					0.062108962745242025
KYQEGLITL	9	Unmodified	_KYQEGLITL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8026123046875	2	532.802957	1063.59136	0.43731	0.000233	-0.82916	-0.00044178	-0.39185	-0.00020878	532.8025825114821	56.616	1.7981	56.682	56.334	58.132	0.066448					137	67	6	0	0	0	5.7754E-06	3	12193	12193;12242;12293		152.89	60.233	1	9311600			9952	7529	6508	6560	13884;13885;13886	13884					0.062108962745242025
KYQELQVLF	9	Unmodified	_KYQELQVLF_					0	0	0		ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF	ENSG00000139722|ENST00000267202|VPS37B	ENSG00000139722|ENST00000267202|VPS37B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3243408203125	2	584.324057	1166.63356	0.85336	0.00049864	-0.38429	-0.00022455	0.46907	0.00027409	584.3238017912893	65.47	0.97025	65.47	65.253	66.223	0					87	34	4	0	0	0	0.023873	4	15050	15006;15050;15100;15166		55.503	21.099	1	1227700			9953	2984	6509	6561	13887;13888;13889;13890	13888					0.05690871682895704
KYQELQVLF	9	Unmodified	_KYQELQVLF_					0	0	0		ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF	ENSG00000139722|ENST00000267202|VPS37B	ENSG00000139722|ENST00000267202|VPS37B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3236694335938	2	584.324057	1166.63356	0.80706	0.00047159	-0.27226	-0.00015909	0.53481	0.0003125	584.3238089744457	65.468	0.76952	65.535	65.285	66.055	0.066872					73	29	4	0	0	0	0.038996	4	14845	14845;14889;14943;15014		45.74	16.658	1	1226900			9954	2984	6509	6561	13891;13892;13893;13894	13891					0.05690871682895704
KYQELYPAI	9	Unmodified	_KYQELYPAI_					0	0	0			REV__PMCH|p.S62Y|1|0.22|ENSG00000183395|chr12:102197586-102197586|G/T|missense_variant	REV__PMCH|p.S62Y|1|0.22|ENSG00000183395|chr12:102197586-102197586|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7952880859375	2	562.802957	1123.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.372	1	39.372	38.872	39.872	0								0	0	0	0.25287	1	7103	7103		8.7454	0.58988	1		+		9955	12961	6510	6562	13895	13895					0.03450896274512161
KYQELYPAI	9	Unmodified	_KYQELYPAI_					0	0	0			REV__PMCH|p.S62Y|1|0.22|ENSG00000183395|chr12:102197586-102197586|G/T|missense_variant	REV__PMCH|p.S62Y|1|0.22|ENSG00000183395|chr12:102197586-102197586|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.795166015625	2	562.802957	1123.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.087	1	39.174	38.674	39.674	0.08688								0	0	0	0.25287	1	6891	6891		8.7454	2.5396	1		+		9956	12961	6510	6562	13896	13896					0.03450896274512161
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7855224609375	2	554.785296	1107.55604	0.2681	0.00014874	-0.26697	-0.00014811	0.0011295	6.266E-07	554.7852999290006	35.445	2.603	35.445	35.18	37.783	0					215	98	5	0	0	0	3.2925E-10	8	5926	5885;5926;5969;6014;6053;6100;6152;6195		176.43	87.026	1	3695500			9957	2725	6511	6563	13897;13898;13899;13900;13901;13902;13903;13904	13898					0.006562337467130419
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7855834960938	2	554.785296	1107.55604	0.37976	0.00021069	-0.39584	-0.00021961	-0.016082	-8.9221E-06	554.7852540320438	35.369	1.7746	35.448	35.142	36.917	0.078827					178	70	6	0	0	0	3.2925E-10	10	5783	5743;5783;5794;5826;5869;5919;5968;6014;6060;6118		176.43	83.261	1	3270500			9958	2725	6511	6563	13905;13906;13907;13908;13909;13910;13911;13912;13913;13914	13906					0.006562337467130419
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3036499023438	2	592.303321	1182.59209	0.58224	0.00034486	-0.15289	-9.0558E-05	0.42934	0.0002543	592.3031909441773	54.945	1.3533	54.945	54.682	56.035	0					149	48	5	0	0	0	2.973E-13	3	11839	11785;11839;11886		191.38	109.54	1	4541000			9959	3942	6512	6564	13915;13916;13917	13916					0.008096909235518979
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3036499023438	2	592.303321	1182.59209	0.60915	0.0003608	-0.16515	-9.7819E-05	0.444	0.00026298	592.3031920737748	54.905	1.2717	54.97	54.738	56.01	0.065128					126	49	4	0	0	0	4.8315E-24	2	11681	11638;11681		223.81	148.88	1	4150500			9960	3942	6512	6564	13918;13919	13919					0.008096909235518979
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.811279296875	2	578.811116	1155.60768	0.25239	0.00014608	0.050287	2.9106E-05	0.30267	0.00017519	578.810996079487	49.371	0.8814	49.371	49.143	50.024	0					62	30	3	0	0	0	0.0040167	2	10102	10102;10153		103.42	63.462	1	386370			9961	709	6513	6565	13920;13921	13920					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8111572265625	2	578.811116	1155.60768	0.24294	0.00014062	0.12128	7.0198E-05	0.36422	0.00021081	578.8110682747761	49.216	0.69394	49.293	49.076	49.77	0.076607					70	24	4	0	0	0	0.00061878	3	9976	9928;9976;10037		129.77	81.426	1	688980			9962	709	6513	6565	13922;13923;13924	13923					0.03610022231282528
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3267822265625	2	561.326934	1120.63931	-0.14449	-8.1105E-05	0.10374	5.8232E-05	-0.040748	-2.2873E-05	561.3269181274917	44.931	1.7304	44.931	44.689	46.42	0					159	60	4	0	0	0	0.0032694	6	8807	8758;8807;8855;8902;8954;9054		108	71.953	1	1048500			9963	2969	6514	6566	13925;13926;13927;13928;13929;13930	13926					0.08382014985227215
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3268432617188	2	561.326934	1120.63931	0.12819	7.1956E-05	-0.12756	-7.16E-05	0.00063343	3.5556E-07	561.3267725939949	44.875	0.959	44.963	44.681	45.64	0.08754					98	36	4	0	0	0	0.0032694	5	8649	8608;8649;8700;8746;8794		108	71.953	1	1030700			9964	2969	6514	6566	13931;13932;13933;13934;13935	13932					0.08382014985227215
KYQQNVQS	8	Unmodified	_KYQQNVQS_					0	0	0		ENSG00000163793|ENST00000296097|DNAJC5G	ENSG00000163793|ENST00000296097|DNAJC5G	ENSG00000163793|ENST00000296097|DNAJC5G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.75048828125	2	497.751256	993.487959	-0.047469	-2.3628E-05	1.6311	0.00081188	1.5836	0.00078825	497.7520297308219	27.395	0.48968	27.481	27.224	27.713	0.086699					55	40	2	0	0	0	0.53894	1	3363	3363		2.0598	0	1	139920			9965	3945	6515	6567	13936	13936					-0.009045911132830042
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.9154052734375	3	406.915423	1217.72444	0.039014	1.5875E-05	0.02811	1.1438E-05	0.067124	2.7314E-05	406.9154361196014	36.524	2.1942	36.606	36.235	38.43	0.081715					195	83	4	0	0	0	0.23751	1	6127	6127		14.218	5.2419	1	762900			9966	5414	6516	6568	13937	13937					0.12428760451052767
KYQTLSLKQLF	11	Unmodified	_KYQTLSLKQLF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.9344177246094	3	456.934372	1367.78129	0.60462	0.00027627	-0.25214	-0.00011521	0.35249	0.00016106	456.9341101532342	60.218	0.49372	60.218	59.989	60.483	0					31	17	2	0	0	0	0.29729	1	13387	13387		18.34	14.223	1	133450			9967	1580	6517	6569	13938	13938					0.11210763216899977
KYQTLSLKQLF	11	Unmodified	_KYQTLSLKQLF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	456.934372	1367.78129	0.095692	4.3725E-05	0.1358	6.2051E-05	0.23149	0.00010578	456.9342948742773	60.057	0.39847	60.129	59.967	60.366	0.072338	-0.044593	0.00023838	NaN	18.34	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93256			9968	1580	6517	6569							0.11210763216899977
KYQYWAVVF	9	Unmodified	_KYQYWAVVF_					0	0	0		PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant;ENSG00000135845|ENST00000344529|PIGC	PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant	PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3136596679688	2	602.313492	1202.61243	0.12297	7.4067E-05	0.32553	0.00019607	0.4485	0.00027014	602.3136561372535	72.215	0.71978	72.215	71.972	72.692	0					64	15	5	0	0	0	0.0030029	3	17100	17040;17055;17100		109.63	85.609	1	5523500			9969	2750	6518	6570	13939;13940;13941	13941					0.019229063740112906
KYQYWAVVF	9	Unmodified	_KYQYWAVVF_					0	0	0		PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant;ENSG00000135845|ENST00000344529|PIGC	PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant	PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.313720703125	2	602.313492	1202.61243	0.31916	0.00019223	0.24154	0.00014548	0.56069	0.00033771	602.31358577563	72.161	0.67299	72.217	71.921	72.594	0.055939					70	17	5	0	0	0	0.0046476	2	16914	16865;16914		85.357	67.21	1	5427800			9970	2750	6518	6570	13942;13943	13943					0.019229063740112906
KYRDDTNI	8	Unmodified	_KYRDDTNI_					0	0	0		tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7570190429688	2	512.756538	1023.49852	0.11676	5.9869E-05	-0.1258	-6.4506E-05	-0.009043	-4.6369E-06	512.7565387484996	35.229	0.70533	35.229	34.912	35.617	0					31	21	2	0	0	0	0.53666	1	5873	5873		3.5965	0	1	44520			9971	13502	6519	6571	13944	13944					-0.012286084588822632
KYREGRHW	8	Unmodified	_KYREGRHW_					0	0	0		ENST00000484268.1_1_7:48352666-48443694:+|nuORF	ENST00000484268.1_1_7:48352666-48443694:+|nuORF	ENST00000484268.1_1_7:48352666-48443694:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.795654296875	2	566.293956	1130.57336	-0.17351	-9.8256E-05	-0.3312	-0.00018756	-0.5047	-0.00028581	566.2934866079854	31.955	0.30193	31.955	31.753	32.055	0					17	12	2	0	0	0	0.3576	1	4901	4901		0.79363	0.10326	1	20935			9972	6772	6520	6572	13945	13945					0.013296188630420147
KYREYNRAVL	10	Unmodified	_KYREYNRAVL_					0	0	0			REV__ENSG00000124160|ENST00000290231|NCOA5	REV__ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.9103698730469	3	437.910449	1310.70952	0.03439	1.506E-05	-0.35011	-0.00015332	-0.31572	-0.00013826	437.91020636088234	31.807	0.43096	31.807	31.597	32.028	0					25	17	2	0	0	0	0.47232	1	4867	4867		0.56317	0	1	22421	+		9973	8946	6521	6573	13946	13946					0.06659268583030098
KYRFHKTR	8	Unmodified	_KYRFHKTR_					0	0	0		ENST00000572638.1_1_17:44625595-44632942:+|nuORF;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A;ENST00000570311.1_1_17:45126763-45127807:+|nuORF;ENSG00000176809|ENST00000584306|LRRC37A3	ENST00000572638.1_1_17:44625595-44632942:+|nuORF	ENST00000572638.1_1_17:44625595-44632942:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3267822265625	2	568.327799	1134.64105	-0.17753	-0.00010089	-1.096	-0.00062287	-1.2735	-0.00072377	568.3270991080022	30.083	0.49562	30.083	29.866	30.362	0					47	22	3	0	0	0	0.3576	1	4330	4330		1.8442	0.36234	1	48487			9974	4671	6522	6574	13947	13947					0.07911068793828235
KYRILLFFWSL	11	Unmodified	_KYRILLFFWSL_					0	0	0			REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.9590148925781	3	495.958741	1484.85439	0.70329	0.0003488	-0.03739	-1.8544E-05	0.6659	0.00033026	495.9586116921887	98.06	2.0454	98.06	97.387	99.433	0					237	116	4	0	0	0	0.41693	1	25114	25114		0.45452	0.087843	1	494510	+		9975	10814	6523	6575	13948	13948					0.13135936730191133
KYRILLFFWSL	11	Unmodified	_KYRILLFFWSL_					0	0	0			REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.9586486816406	3	495.958741	1484.85439	0.65682	0.00032576	0.0016211	8.0398E-07	0.65845	0.00032656	495.95862592045125	98.041	2.09	98.083	97.227	99.317	0.041939					248	116	4	0	0	0	0.41693	2	24965	24630;24965		0.45452	0	1	514250	+		9976	10814	6523	6575	13949;13950	13950					0.13135936730191133
KYRINFNLF	9	Unmodified	_KYRINFNLF_					0	0	0		tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1	tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1	tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.19268798828125	3	405.560869	1213.66078	0.33431	0.00013558	3.3433	0.0013559	3.6776	0.0014915	405.8975131531339	39.258	0.42939	39.258	38.918	39.347	0					24	15	2	0	0	0	0.25952	1	7011	7011		1.1933	0.12188	1	21593			9977	13466	6524	6576	13951	13951					0.06249400013916784
KYRKDEIVQ	9	Unmodified	_KYRKDEIVQ_					0	0	0			REV__ENSG00000145626|ENST00000274278|UGT3A1	REV__ENSG00000145626|ENST00000274278|UGT3A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8306884765625	2	589.830037	1177.64552	-0.049273	-2.9063E-05	0.10072	5.9409E-05	0.051449	3.0346E-05	589.8301302550763	27.21	2.2695	27.21	27.006	29.275	0					301	142	5	0	0	0	0.32614	1	3800	3800		3.2813	0.54611	1	1644400	+		9978	9522	6525	6577	13952	13952					0.0638048842608896
KYRKKEEET	9	Unmodified	_KYRKKEEET_					0	0	0			REV__ENSG00000076513|ENST00000261739|ANKRD13A	REV__ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8256225585938	2	605.824952	1209.63535	0.12721	7.7068E-05	0.038554	2.3357E-05	0.16577	0.00010042	605.8249610060627	27.231	0.32117	27.231	27.085	27.407	0					34	19	2	0	0	0	0.34646	1	3477	3477		0.6015	0	1	28621	+		9979	8204	6526	6578	13953	13953					0.03891880700825823
KYRLAHLFM	9	Unmodified	_KYRLAHLFM_					0	0	0			REV__ENSG00000166133|ENST00000315616|RPUSD2	REV__ENSG00000166133|ENST00000315616|RPUSD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8300170898438	2	589.828786	1177.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.523	1	29.601	29.101	30.101	0.078287								0	0	0	0.28631	1	4034	4034		1.8442	0.19162	1				9980	10062	6527	6579	13954	13954					0.06130361487407754
KYRLVEEKN	9	Unmodified	_KYRLVEEKN_					0	0	0			REV__ENSG00000129518|ENST00000250454|EAPP	REV__ENSG00000129518|ENST00000250454|EAPP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8298950195312	2	589.830037	1177.64552	-0.049273	-2.9063E-05	0.10072	5.9409E-05	0.051449	3.0346E-05	589.8301302550763	27.21	2.2695	27.21	27.006	29.275	0					301	142	5	0	0	0	0.33978	2	3852	3852;3988		1.4819	0	1	1644400	+		9981	9036	6528	6580	13955;13956	13955					0.06380488426111697
KYRLVEEKN	9	Unmodified	_KYRLVEEKN_					0	0	0			REV__ENSG00000129518|ENST00000250454|EAPP	REV__ENSG00000129518|ENST00000250454|EAPP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8297729492188	2	589.830037	1177.64552	0.061458	3.625E-05	0.057209	3.3744E-05	0.11867	6.9994E-05	589.830143565032	27.109	1.3337	27.195	26.975	28.308	0.086699					253	91	5	0	0	0	0.33978	1	3517	3517		1.4819	0	1	1996400	+		9982	9036	6528	6580	13957	13957					0.06380488426111697
KYRLVEEKN	9	Unmodified	_KYRLVEEKN_					0	0	0			REV__ENSG00000129518|ENST00000250454|EAPP	REV__ENSG00000129518|ENST00000250454|EAPP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8306884765625	2	589.830037	1177.64552	0.065026	3.8354E-05	0.45514	0.00026845	0.52016	0.00030681	589.8302165028826	28.44	0.88563	28.522	28.304	29.189	0.082132					89	57	2	0	0	0	0.33978	2	3649	3649;3689		1.4819	0	1	26526	+		9983	9036	6528	6580	13958;13959	13958					0.06380488426111697
KYRPALVQ	8	Unmodified	_KYRPALVQ_					0	0	0			REV__ENST00000532676.1_1_11:6702431-6703624:-|nuORF	REV__ENST00000532676.1_1_11:6702431-6703624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.79254150390625	2	487.792727	973.5709	-0.25676	-0.00012525	-0.046057	-2.2466E-05	-0.30282	-0.00014771	487.7925887424557	32.153	1.3183	32.153	31.957	33.275	0					100	56	3	0	0	0	0.53858	1	5064	5064		2.3027	0	1	292940	+		9984	9795	6529	6581	13960	13960					0.0830577040536582
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8240356445312	2	624.824224	1247.63389	0.15022	9.3862E-05	0.12814	8.0066E-05	0.27836	0.00017393	624.8241961693651	62.482	0.75597	62.482	62.285	63.041	0					69	27	3	0	0	0	0.0072241	3	14151	14101;14151;14248		75.761	53.025	1	803340			9985	5214	6530	6582	13961;13962;13963	13962					0.01998291402742325
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.82421875	2	624.824224	1247.63389	0.28096	0.00017555	0.13511	8.4421E-05	0.41607	0.00025997	624.8241205638719	62.438	1.0632	62.51	62.261	63.325	0.072701					72	41	3	0	0	0	0.029291	2	13988	13935;13988		51.63	34.517	1	739620			9986	5214	6530	6582	13964;13965	13965					0.01998291402742325
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8852233886719	3	416.885241	1247.63389	0.18082	7.5382E-05	-0.1198	-4.9942E-05	0.061022	2.5439E-05	416.88510408016236	62.4	0.91422	62.472	62.207	63.122	0.072697					98	33	5	0	0	0	0.26684	1	13975	13975		7.1017	0	1	1382700			9987	5214	6530	6582	13966	13966					0.01998291402742325
KYSEIQQLL	9	Unmodified	_KYSEIQQLL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.314453125	2	561.313689	1120.61282	0.5391	0.0003026	0.2025	0.00011367	0.7416	0.00041627	561.3137340362463	57.633	0.39174	57.633	57.463	57.855	0					30	13	3	0	0	0	0.064247	2	12638	12638;12695		40.239	15.248	1	197040			9988	782	6531	6583	13967;13968	13967					0.05734281303261923
KYSEIQQLL	9	Unmodified	_KYSEIQQLL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3152465820312	2	561.313689	1120.61282	0.44275	0.00024852	0.43743	0.00024553	0.88018	0.00049405	561.3139368953662	57.588	0.40188	57.656	57.467	57.869	0.068371					27	14	3	0	0	0	0.26705	1	12529	12529		10.8	5.5026	1	186580			9989	782	6531	6583	13969	13969					0.05734281303261923
KYSEVFEAI	9	Unmodified	_KYSEVFEAI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2794799804688	2	543.279315	1084.54408	0.21876	0.00011885	0.25886	0.00014063	0.47762	0.00025948	543.2793427207365	56.777	1.0299	56.777	56.539	57.569	0					101	37	4	0	0	0	0.0028522	4	12394	12347;12356;12394;12440		110.55	56.72	1	1873400			9990	764	6532	6584	13970;13971;13972;13973	13972					0.005186170035358373
KYSEVFEAI	9	Unmodified	_KYSEVFEAI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2794799804688	2	543.279315	1084.54408	0.36785	0.00019984	0.20541	0.00011159	0.57325	0.00031144	543.2792451386763	56.695	1.0529	56.761	56.522	57.575	0.066448					100	39	5	0	0	0	0.0042616	3	12234	12188;12234;12280		100.09	52.342	1	1427700			9991	764	6532	6584	13974;13975;13976	13975					0.005186170035358373
KYSFLPYQL	9	Unmodified	_KYSFLPYQL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.8126220703125	2	579.813325	1157.6121	0.58973	0.00034193	-0.67254	-0.00038995	-0.082805	-4.8011E-05	579.8129573557874	69.169	0.48515	69.169	68.958	69.443	0					26	16	2	0	0	0	0.15482	1	16155	16155		23.79	7.2239	1	416450			9992	1371	6533	6585	13977	13977					0.039594866541847296
KYSFWLTTI	9	Unmodified	_KYSFWLTTI_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2891235351562	2	579.813325	1157.6121	0.52982	0.0003072	0.27526	0.0001596	0.80508	0.0004668	579.8133645847167	75.196	0.55634	75.196	75.032	75.589	0					48	20	3	0	0	0	0.038134	1	17984	17984		67.838	36.57	1	497790			9993	2695	6534	6586	13978	13978					0.039594866541847296
KYSFWLTTI	9	Unmodified	_KYSFWLTTI_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.2874145507812	2	579.813325	1157.6121	0.52583	0.00030489	0.55652	0.00032268	1.0824	0.00062757	579.8134064780268	75.172	0.54524	75.217	75.024	75.569	0.044037					40	19	3	0	0	0	0.020468	1	17833	17833		65.474	40.483	1	682160			9994	2695	6534	6586	13979	13979					0.039594866541847296
KYSKISKDYF	10	Unmodified	_KYSKISKDYF_					0	0	0		tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.8973388671875	3	426.895806	1277.66559	0.76515	0.00032664	2.0063	0.00085647	2.7714	0.0011831	426.8966554641169	54.619	0.53518	54.619	54.48	55.015	0					54	23	3	0	0	0	0.42901	1	11723	11723		5.0475	1.4548	1	438340			9995	13638	6535	6587	13980	13980					0.037862393660361704
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.3054809570312	2	535.305667	1068.59678	-0.46246	-0.00024756	-0.54316	-0.00029076	-1.0056	-0.00053831	535.3055645299386	41.716	5.0164	41.716	41.433	46.449	0					418	177	5	0	0	0	7.7511E-24	5	7826	7776;7826;7874;7919;7978		218.2	163.42	1	7659100			9996	3168	6536	6588	13981;13982;13983;13984;13985	13982					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.3053588867188	2	535.305667	1068.59678	-0.13386	-7.1656E-05	-0.60529	-0.00032402	-0.73915	-0.00039567	535.3055597018606	41.641	2.7413	41.731	41.476	44.217	0.089764					283	104	5	0	0	0	5.4766E-18	4	7707	7623;7664;7707;7754		209.87	155.1	1	7413600			9997	3168	6536	6588	13986;13987;13988;13989	13988					0.06522619856991696
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8421630859375	2	546.842416	1091.67028	-0.055012	-3.0083E-05	-0.08305	-4.5415E-05	-0.13806	-7.5498E-05	546.8423233688551	26.401	0.31816	26.492	26.369	26.687	0.091507					43	24	2	0	0	0	0.32831	1	3104	3104		2.9952	0	1	36254			9998	5169	6537	6589	13990	13990					0.12811168299458586
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2874145507812	2	537.286943	1072.55933	0.69675	0.00037435	0.14756	7.928E-05	0.84431	0.00045363	537.2869658852261	66.932	2.1996	66.932	66.669	68.868	0					221	82	5	0	0	0	1.8728E-05	6	15479	15435;15479;15521;15566;15614;15666		140.63	88.365	1	6245200			9999	978	6538	6590	13991;13992;13993;13994;13995;13996	13992					0.0259552859138239
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2874755859375	2	537.286943	1072.55933	0.89442	0.00048056	-0.036976	-1.9867E-05	0.85745	0.00046069	537.2868554218269	66.904	2.4409	66.969	66.704	69.145	0.065071					220	88	6	0	0	0	5.7754E-06	6	15325	15276;15325;15367;15407;15454;15496		152.89	102.95	1	7125900			10000	978	6538	6590	13997;13998;13999;14000;14001;14002	13998					0.0259552859138239
KYSRGAGLG	9	Unmodified	_KYSRGAGLG_					0	0	0		ENSG00000103550|ENST00000219837|KNOP1	ENSG00000103550|ENST00000219837|KNOP1	ENSG00000103550|ENST00000219837|KNOP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.7527770996094	2	454.751059	907.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.66	1	48.66	48.16	49.16	0								0	0	0	0.24643	1	9906	9906		10.074	1.4806	1				10001	1382	6539	6591	14003	14003					0.030120339575205435
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.768798828125	2	512.769114	1023.52368	0.27534	0.00014119	-0.78186	-0.00040092	-0.50652	-0.00025973	512.7686225929161	37.195	1.0005	37.195	36.611	37.612	0					59	23	4	0	0	0	0.034744	1	6427	6427		47.732	18.65	1	164100			10002	1075	6540	6592	14004	14004					0.01285446343717922
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.768310546875	2	512.769114	1023.52368	0.28401	0.00014563	-0.63191	-0.00032402	-0.3479	-0.00017839	512.7686305081194	37.076	0.84523	37.16	36.839	37.684	0.08448					48	19	4	0	0	0	0.13554	1	6271	6271		26.021	5.5671	1	152400			10003	1075	6540	6592	14005	14005					0.01285446343717922
KYTEITATYF	10	Unmodified	_KYTEITATYF_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.8107299804688	2	618.810979	1235.6074	-0.15681	-9.7036E-05	0.42145	0.0002608	0.26464	0.00016376	618.8114162411806	57.085	0.55191	57.085	56.777	57.329	0					39	19	3	0	0	0	0.17079	2	12462	12462;12517		37.075	26.251	1	242160			10004	3848	6541	6593	14006;14007	14006					-0.0009744227925239102
KYTEITATYF	10	Unmodified	_KYTEITATYF_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.810791015625	2	618.810979	1235.6074	0.029646	1.8345E-05	-0.29749	-0.00018409	-0.26785	-0.00016575	618.8105496914657	56.998	0.43392	57.064	56.884	57.318	0.066452					33	15	3	0	0	0	0.12534	2	12310	12310;12363		42.312	31.489	1	211140			10005	3848	6541	6593	14008;14009	14008					-0.0009744227925239102
KYTEKLEEI	9	Unmodified	_KYTEKLEEI_					0	0	0		ENSG00000106477|ENST00000223208|CEP41;ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41	ENSG00000106477|ENST00000223208|CEP41	ENSG00000106477|ENST00000223208|CEP41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.81103515625	2	576.810979	1151.6074	0.2101	0.00012119	-0.062753	-3.6197E-05	0.14735	8.4994E-05	576.8109485978654	36.447	0.89821	36.447	36.231	37.129	0					62	34	3	0	0	0	0.1019	1	6208	6208		32.037	3.543	1	160010			10006	1524	6542	6594	14010	14010					0.037665577207462775
KYTEKLEEI	9	Unmodified	_KYTEKLEEI_					0	0	0		ENSG00000106477|ENST00000223208|CEP41;ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41	ENSG00000106477|ENST00000223208|CEP41	ENSG00000106477|ENST00000223208|CEP41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8112182617188	2	576.810979	1151.6074	0.25224	0.00014549	-0.18581	-0.00010718	0.066424	3.8314E-05	576.8108137981386	36.368	0.66114	36.45	36.235	36.896	0.081711					58	27	4	0	0	0	0.19307	1	6057	6057		19.362	3.2128	1	190980			10007	1524	6542	6594	14011	14011					0.037665577207462775
KYTKIFNDF	9	Unmodified	_KYTKIFNDF_					0	0	0		nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.3085327148438	2	588.308406	1174.60226	0.52101	0.00030651	-0.23684	-0.00013933	0.28417	0.00016718	588.3081503007131	47.689	1.0472	47.689	47.467	48.514	0					89	35	4	0	0	0	0.00015616	1	9617	9617		125.18	87.207	1	746620			10008	457	6543	6595	14012	14012					0.02194298648782933
KYTKIFNDF	9	Unmodified	_KYTKIFNDF_					0	0	0		nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3082275390625	2	588.308406	1174.60226	0.76393	0.00044943	-0.25023	-0.00014721	0.5137	0.00030222	588.3081404186848	47.595	0.86719	47.675	47.458	48.325	0.080029					79	33	4	0	0	0	2.3118E-11	1	9438	9438		158.08	112.38	1	742810			10009	457	6543	6595	14013	14013					0.02194298648782933
KYTMSVVLK	9	Unmodified	_KYTMSVVLK_					0	0	0		tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.8096923828125	2	534.809728	1067.6049	0.53869	0.0002881	-0.064099	-3.4281E-05	0.47459	0.00025382	534.8096166436796	37.56	2.2689	37.645	37.162	39.431	0.08448					155	84	4	0	0	0	0.24101	1	6531	6531		15.248	0	1	370090			10010	13449	6544	6596	14014	14014					0.07380430782109215
KYTNRPTKAV	10	Unmodified	_KYTNRPTKAV_					0	0	0			REV__ENSG00000148773|ENST00000368654|MKI67	REV__ENSG00000148773|ENST00000368654|MKI67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3375854492188	2	589.33803	1176.66151	-0.068592	-4.0424E-05	0.26453	0.0001559	0.19594	0.00011548	589.338093690904	25.631	0.62606	25.631	25.464	26.09	0					102	48	3	0	0	0	0.46208	1	3073	3073		2.4985	0.84587	1	110680	+		10011	9595	6545	6597	14015	14015					0.0802419466297124
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2954711914062	2	545.295633	1088.57671	-0.26275	-0.00014328	0.29949	0.00016331	0.036733	2.003E-05	545.2956856176245	21.721	1.1536	21.721	21.5	22.654	0					314	100	4	0	0	0	0.0044607	6	1926	1889;1926;1962;1999;2032;2067		92.491	54.517	1	288050			10012	4300	6546	6598	14016;14017;14018;14019;14020;14021	14017					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.295654296875	2	545.295633	1088.57671	0.075815	4.1341E-05	0.017555	9.5725E-06	0.093369	5.0914E-05	545.2955532331642	21.502	1.3149	21.604	21.123	22.438	0.10178					377	131	4	0	0	0	0.0034016	6	1768	1734;1768;1802;1832;1863;1893		107.19	61.166	1	530650			10013	4300	6546	6598	14022;14023;14024;14025;14026;14027	14023					0.03596868917043139
KYTRLQSD	8	Unmodified	_KYTRLQSD_					0	0	0		ENST00000517480.1_1_5:159849319-159849478:+|nuORF	ENST00000517480.1_1_5:159849319-159849478:+|nuORF	ENST00000517480.1_1_5:159849319-159849478:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7687072753906	2	505.766906	1009.51926	0.44917	0.00022717	3.2013	0.0016191	3.6504	0.0018463	505.7687018519124	47.555	0.33847	47.637	47.506	47.844	0.081692					15	13	2	0	0	0	0.53755	1	9470	9470		2.9952	0.26005	1	60005			10014	6938	6547	6599	14028	14028					0.014879819208090339
KYTSWYVAL	9	Unmodified	_KYTSWYVAL_					0	0	0		ENSG00000138685|ENST00000644866|FGF2;nc|ENSG00000138685|P09038-3|FGF2;nc|ENSG00000138685|P09038-1|FGF2;nc|ENSG00000138685|P09038|FGF2	ENSG00000138685|ENST00000644866|FGF2	ENSG00000138685|ENST00000644866|FGF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7853393554688	2	565.797675	1129.5808	0.50363	0.00028495	0.0019181	1.0852E-06	0.50554	0.00028604	565.7974910926548	64.757	0.5667	64.757	64.546	65.112	0					43	20	3	0	0	0	0.13341	1	14795	14795		26.268	7.0112	1	269860			10015	2930	6548	6600	14029	14029					0.02118913620074636
KYTSWYVAL	9	Unmodified	_KYTSWYVAL_					0	0	0		ENSG00000138685|ENST00000644866|FGF2;nc|ENSG00000138685|P09038-3|FGF2;nc|ENSG00000138685|P09038-1|FGF2;nc|ENSG00000138685|P09038|FGF2	ENSG00000138685|ENST00000644866|FGF2	ENSG00000138685|ENST00000644866|FGF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7854614257812	2	565.797675	1129.5808	0.40423	0.00022871	0.0074704	4.2268E-06	0.4117	0.00023294	565.7975085743996	64.686	0.52495	64.755	64.536	65.061	0.068909					46	19	3	0	0	0	0.16392	1	14639	14639		22.736	11.096	1	311450			10016	2930	6548	6600	14030	14030					0.02118913620074636
KYTSYILAF	9	Unmodified	_KYTSYILAF_					0	0	0		ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3001708984375	2	553.30005	1104.58555	0.74957	0.00041474	-0.23451	-0.00012975	0.51506	0.00028499	553.2996757553964	67.077	0.77872	67.077	66.807	67.586	0					69	28	3	0	0	0	0.18151	1	15506	15506		29.841	4.4413	1	418230			10017	1709	6549	6601	14031	14031					0.037437977628542285
KYTSYILAF	9	Unmodified	_KYTSYILAF_					0	0	0		ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2999877929688	2	553.30005	1104.58555	0.90819	0.0005025	-0.45056	-0.0002493	0.45763	0.00025321	553.2996115765965	67.025	0.73701	67.09	66.871	67.608	0.065071					60	25	4	0	0	0	0.081383	1	15345	15345		36.506	4.2007	1	358500			10018	1709	6549	6601	14032	14032					0.037437977628542285
KYTTFSLFW	9	Unmodified	_KYTTFSLFW_					0	0	0		ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2901611328125	2	596.8055	1191.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.157	1	78.187	77.687	78.687	0.030159								0	0	0	0.27427	1	18743	18743		4.3292	1.7518	1				10019	7237	6550	6602	14033	14033					0.008312001371450606
KYVAEFLEW	9	Unmodified	_KYVAEFLEW_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3384399414062	2	592.802957	1183.59136	0.14275	8.4622E-05	0.51449	0.00030499	0.65723	0.00038961	592.8033805743808	71.942	0.58071	71.942	71.556	72.137	0					21	14	2	0	0	0	0.13858	1	16965	16965		38.176	11.292	1	287030			10020	5398	6551	6603	14034	14034					0.00690896274500119
KYVAEFLEW	9	Unmodified	_KYVAEFLEW_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3387451171875	2	592.802957	1183.59136	0.16249	9.6326E-05	0.66045	0.00039152	0.82295	0.00048785	592.8031587017774	71.877	0.355	71.933	71.705	72.06	0.055939					28	12	3	0	0	0	0.14884	1	16794	16794		36.506	16.053	1	324920			10021	5398	6551	6603	14035	14035					0.00690896274500119
KYVDLTVSF	9	Unmodified	_KYVDLTVSF_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.289306640625	2	536.289682	1070.56481	0.5641	0.00030252	-0.86962	-0.00046637	-0.30552	-0.00016385	536.2890143949668	63.721	0.63354	63.721	63.504	64.137	0					47	22	3	0	0	0	0.00041987	1	14496	14496		133.05	71.695	1	1137500			10022	508	6552	6604	14036	14036					0.0323520738318166
KYVDLTVSF	9	Unmodified	_KYVDLTVSF_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.2896118164062	2	536.289682	1070.56481	0.66932	0.00035895	-0.94711	-0.00050792	-0.27779	-0.00014897	536.2888899700168	63.695	1.0138	63.766	63.444	64.458	0.071018					59	34	3	0	0	0	0.0011184	1	14325	14325		121.53	62.855	1	810700			10023	508	6552	6604	14037	14037					0.0323520738318166
KYVENFGLI	9	Unmodified	_KYVENFGLI_					0	0	0		ENST00000561636.2_1_15:43423309-43423531:+|nuORF;ENSG00000118363|ENST00000263672|SPCS2	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7979125976562	2	541.797675	1081.5808	0.33775	0.00018299	0.10199	5.5255E-05	0.43973	0.00023825	541.7977184040583	61.587	0.86671	61.587	61.447	62.314	0					109	44	3	0	0	0	0.0047429	2	13867	13825;13867		83.429	39.57	1	2866500			10024	2035	6553	6605	14038;14039	14039					0.043269136200933644
KYVENFGLI	9	Unmodified	_KYVENFGLI_					0	0	0		ENST00000561636.2_1_15:43423309-43423531:+|nuORF;ENSG00000118363|ENST00000263672|SPCS2	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7976684570312	2	541.797675	1081.5808	0.38428	0.0002082	0.069427	3.7616E-05	0.4537	0.00024582	541.7977475241061	61.536	0.80107	61.609	61.435	62.236	0.073421					95	44	3	0	0	0	0.0047429	2	13693	13657;13693		83.429	43.479	1	2102500			10025	2035	6553	6605	14040;14041	14041					0.043269136200933644
KYVEQLLTLF	10	Unmodified	_KYVEQLLTLF_					0	0	0		CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5;CUL5-ATM|1|fusion	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.3599853515625	2	627.360639	1252.70673	0.6278	0.00039386	-0.82833	-0.00051966	-0.20054	-0.00012581	627.3593312590658	81.57	0.43532	81.57	81.374	81.81	0					21	14	3	0	0	0	0.2145	1	19950	19950		32.037	5.7693	1	212310			10026	259	6554	6606	14042	14042					0.09048000405505263
KYVEQLLTLF	10	Unmodified	_KYVEQLLTLF_					0	0	0		CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5;CUL5-ATM|1|fusion	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.3590698242188	2	627.360639	1252.70673	0.47659	0.000299	-0.78244	-0.00049087	-0.30585	-0.00019188	627.3597891613076	81.595	0.31635	81.616	81.475	81.792	0.021866					23	11	3	0	0	0	0.17079	1	19780	19780		37.075	15.538	1	177810			10027	259	6554	6606	14043	14043					0.09048000405505263
KYVERIHYI	9	Unmodified	_KYVERIHYI_					0	0	0		nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.56414794921875	3	407.564391	1219.67134	0.26051	0.00010617	-0.25924	-0.00010566	0.0012739	5.1921E-07	407.5642136536607	34.661	1.2798	34.661	34.395	35.675	0					134	46	4	0	0	0	0.19398	2	5686	5686;5729		13.615	6.0836	1	169000			10028	1370	6555	6607	14044;14045	14044					0.07029382668383732
KYVERIHYI	9	Unmodified	_KYVERIHYI_					0	0	0		nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	407.564391	1219.67134	-0.11565	-4.7136E-05	-0.0047731	-1.9454E-06	-0.12043	-4.9081E-05	407.564327346896	34.44	1.0273	34.516	34.249	35.276	0.076244	-0.072254	9.6645E-05	NaN	13.615	141	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382080			10029	1370	6555	6607							0.07029382668383732
KYVESLDVVT	10	Unmodified	_KYVESLDVVT_					0	0	0			REV__ENSG00000125633|ENST00000376300|CCDC93	REV__ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.8108520507812	2	576.810979	1151.6074	0.2101	0.00012119	-0.062753	-3.6197E-05	0.14735	8.4994E-05	576.8109485978654	36.447	0.89821	36.447	36.231	37.129	0					62	34	3	0	0	0	0.45945	1	6259	6259		2.9952	0.93549	1	160010	+		10030	8975	6556	6608	14046	14046					0.037665577207462775
KYVGQLAVL	9	Unmodified	_KYVGQLAVL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.8028564453125	2	495.80276	989.590967	0.65832	0.0003264	-0.31029	-0.00015384	0.34803	0.00017255	495.80252172311043	53.982	0.37909	53.982	53.813	54.192	0					20	12	2	0	0	0	0.14091	1	11535	11535		25.399	9.5521	1	118360			10031	2030	6557	6609	14047	14047					0.09575521345323068
KYVGQLAVL	9	Unmodified	_KYVGQLAVL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.8024597167969	2	495.80276	989.590967	0.59908	0.00029703	-0.26155	-0.00012968	0.33753	0.00016735	495.8025344827686	53.96	0.31266	54.025	53.866	54.179	0.065128					20	11	2	0	0	0	0.18364	1	11390	11390		20.454	4.6064	1	111240			10032	2030	6557	6609	14048	14048					0.09575521345323068
KYVGQLAVL	9	Unmodified	_KYVGQLAVL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	495.80276	989.590967	0.65832	0.0003264	-0.31029	-0.00015384	0.34803	0.00017255	495.80252172311043	53.982	0.37909	53.982	53.813	54.192	0	-0.021745	-7.2269E-06	NaN	25.399	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118360			10033	2030	6557	6609							0.09575521345323068
KYVGQLAVL	9	Unmodified	_KYVGQLAVL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.80276	989.590967	0.59908	0.00029703	-0.26155	-0.00012968	0.33753	0.00016735	495.8025344827686	53.96	0.31266	54.025	53.866	54.179	0.065128	0.021745	4.1103E-05	NaN	25.399	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111240			10034	2030	6557	6609							0.09575521345323068
KYVHGNKT	8	Unmodified	_KYVHGNKT_					0	0	0			REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.75848388671875	2	473.758884	945.503215	-0.41767	-0.00019787	0.515	0.00024398	0.097329	4.6111E-05	473.7586237724608	27.224	0.35909	27.224	27.085	27.445	0					48	21	4	0	0	0	0.53926	1	3509	3509		1.8442	0	1	63461	+		10035	9606	6558	6610	14049	14049					0.028283204745775947
KYVIIPKF	8	Unmodified	_KYVIIPKF_					0	0	0			REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7564392089844	2	504.318046	1006.62154	0.54264	0.00027366	2.6104	0.0013165	3.153	0.0015901	504.3193856889712	85.619	0.18327	85.644	85.511	85.695	0.025169					9	6	2	0	0	0	0.3576	1	20993	20993		4.756	1.8668	1	49684	+		10036	13064	6559	6611	14050	14050					0.11849299730374696
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.22906494140625	2	510.826235	1019.63792	-0.054069	-2.762E-05	-0.42447	-0.00021683	-0.47853	-0.00024445	510.8260210822894	45.97	0.50917	45.97	45.782	46.291	0					27	17	2	0	0	0	0.25162	1	9084	9084		8.1555	1.9497	1	87481			10037	2053	6560	6612	14051	14051					0.1288838089649289
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2288513183594	2	510.826235	1019.63792	0.060771	3.1043E-05	-0.25134	-0.00012839	-0.19057	-9.7349E-05	510.82619957814364	45.824	0.31549	45.91	45.788	46.103	0.085617					27	12	3	0	0	0	0.23908	1	8920	8920		16.149	9.9433	1	55982			10038	2053	6560	6612	14052	14052					0.1288838089649289
KYVKIFDNF	9	Unmodified	_KYVKIFDNF_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.3186645507812	2	587.318774	1172.623	0.37892	0.00022255	-0.10957	-6.4354E-05	0.26935	0.0001582	587.3185541313023	52.731	0.50882	52.731	52.527	53.036	0					42	17	3	0	0	0	0.018465	1	11136	11136		59.368	36.632	1	264890			10039	355	6561	6613	14053	14053					0.043588890284581794
KYVKIFDNF	9	Unmodified	_KYVKIFDNF_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.3189697265625	2	587.318774	1172.623	0.63707	0.00037416	-0.13423	-7.8839E-05	0.50283	0.00029532	587.3185823924968	52.694	0.40802	52.761	52.548	52.956	0.067173					40	15	3	0	0	0	0.078774	2	11004	10960;11004		37.075	27.001	1	232600			10040	355	6561	6613	14054;14055	14055					0.043588890284581794
KYVKIFINL	9	Unmodified	_KYVKIFINL_					0	0	0		ENST00000587807.5_1_18:54270260-54293401:-|nuORF;ENSG00000091164|ENST00000217515|TXNL1	ENST00000587807.5_1_18:54270260-54293401:-|nuORF	ENST00000587807.5_1_18:54270260-54293401:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2771606445312	2	569.35516	1136.69577	0.25791	0.00014684	0.23446	0.00013349	0.49237	0.00028033	569.3550925970624	57.98	0.38846	57.98	57.829	58.217	0					21	13	2	0	0	0	0.24791	1	12730	12730		10.074	6.1295	1	90215			10041	1058	6562	6614	14056	14056					0.13288642821862595
KYVKIFINL	9	Unmodified	_KYVKIFINL_					0	0	0		ENST00000587807.5_1_18:54270260-54293401:-|nuORF;ENSG00000091164|ENST00000217515|TXNL1	ENST00000587807.5_1_18:54270260-54293401:-|nuORF	ENST00000587807.5_1_18:54270260-54293401:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.276611328125	2	569.35516	1136.69577	0.25807	0.00014693	0.24989	0.00014228	0.50796	0.00028921	569.3551714360993	57.871	0.30544	57.939	57.802	58.108	0.068375					15	11	2	0	0	0	0.24791	1	12586	12586		10.074	6.1295	1	89270			10042	1058	6562	6614	14057	14057					0.13288642821862595
KYVKILYDF	9	Unmodified	_KYVKILYDF_					0	0	0		ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2	ENST00000527832.5_1_11:724661-726978:+|nuORF	ENST00000527832.5_1_11:724661-726978:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.83740234375	2	594.8368	1187.65905	0.50056	0.00029775	-0.19598	-0.00011658	0.30457	0.00018117	594.8364651156555	55.035	0.44489	55.035	54.798	55.243	0					32	16	3	0	0	0	0.018465	1	11823	11823		59.368	43.521	1	161120			10043	4690	6563	6615	14058	14058					0.07272346205309077
KYVKILYDF	9	Unmodified	_KYVKILYDF_					0	0	0		ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2	ENST00000527832.5_1_11:724661-726978:+|nuORF	ENST00000527832.5_1_11:724661-726978:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.837158203125	2	594.8368	1187.65905	0.46951	0.00027928	-0.54704	-0.0003254	-0.077528	-4.6117E-05	594.8363974284372	54.95	0.46791	55.015	54.846	55.314	0.065128					35	18	3	0	0	0	0.047066	3	11670	11661;11670;11707		43.982	33.158	1	206650			10044	4690	6563	6615	14059;14060;14061	14060					0.07272346205309077
KYVKPLVQK	9	Unmodified	_KYVKPLVQK_					0	0	0		ENSG00000100473|ENST00000396618|COCH;nc|ENSG00000100473|O43405-2|COCH	ENSG00000100473|ENST00000396618|COCH	ENSG00000100473|ENST00000396618|COCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.8530883789062	2	551.852784	1101.69102	0.33223	0.00018334	-0.096451	-5.3227E-05	0.23578	0.00013012	551.8527025254573	53.168	0.81494	53.168	52.729	53.544	0					56	32	2	0	0	0	0.32112	2	11346	11346;11371		3.9444	0	1	109320			10045	1202	6564	6616	14062;14063	14062					0.14423758679117782
KYVLPKFEL	9	Unmodified	_KYVLPKFEL_					0	0	0		CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8231811523438	2	568.839342	1135.66413	0.1502	8.5438E-05	-0.29494	-0.00016777	-0.14474	-8.2335E-05	568.8391048154343	49.926	0.53098	49.926	49.733	50.264	0					40	18	3	0	0	0	0.13341	1	10275	10275		26.268	4.678	1	220150			10046	241	6565	6617	14064	14064					0.10172650067943323
KYVPKWEIL	9	Unmodified	_KYVPKWEIL_					0	0	0			REV__ENSG00000163293|ENST00000295461|NIPAL1	REV__ENSG00000163293|ENST00000295461|NIPAL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.3085327148438	2	588.344792	1174.67503	0.56913	0.00033485	1.0594	0.00062327	1.6285	0.00095811	588.3453332238834	47.592	0.41415	47.592	47.321	47.735	0					15	13	2	0	0	0	0.25051	1	9617	9617		7.9102	1.187	1	59773	+		10047	9932	6566	6618	14065	14065					0.09468052442230146
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7925415039062	2	566.792924	1131.57129	-0.19699	-0.00011165	0.047648	2.7006E-05	-0.14934	-8.4645E-05	566.7928372760804	44.063	0.90621	44.063	43.595	44.502	0					64	31	3	0	0	0	0.18254	1	8523	8523		20.581	13.292	1	121090			10048	2273	6567	6619	14066	14066					0.01077145334556917
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7930297851562	2	566.792924	1131.57129	-0.04723	-2.677E-05	0.36825	0.00020872	0.32102	0.00018195	566.7929833372929	43.961	0.70272	44.05	43.632	44.335	0.088924					49	24	3	0	0	0	0.20162	2	8378	8326;8378		18.373	11.084	1	128430			10049	2273	6567	6619	14067;14068	14068					0.01077145334556917
KYVSINSTL	9	Unmodified	_KYVSINSTL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.78662109375	2	512.787307	1023.56006	-0.19599	-0.0001005	-0.43811	-0.00022466	-0.6341	-0.00032516	512.7869721970228	45.421	0.465	45.421	45.238	45.703	0					38	15	3	0	0	0	0.085487	1	8934	8934		35.612	15.198	1	161290			10050	1579	6568	6620	14069	14069					0.049223232404415285
KYVSINSTL	9	Unmodified	_KYVSINSTL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7870483398438	2	512.787307	1023.56006	0.065192	3.343E-05	-0.48323	-0.00024779	-0.41803	-0.00021436	512.7869648192907	45.306	0.32295	45.394	45.285	45.608	0.08754					31	12	3	0	0	0	0.10802	1	8774	8774		30.703	14.554	1	117380			10051	1579	6568	6620	14070	14070					0.049223232404415285
KYVSQNCVTS	10	Unmodified	_KYVSQNCVTS_					0	0	0		nc|ENSG00000181090|Q9H9B1-3|EHMT1;ENSG00000181090|ENST00000460843|EHMT1	nc|ENSG00000181090|Q9H9B1-3|EHMT1	nc|ENSG00000181090|Q9H9B1-3|EHMT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7606201171875	2	564.771331	1127.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.267	1	22.369	21.869	22.869	0.10178								0	0	0	0.33762	1	1979	1979		2.9952	0.49676	1				10052	4828	6569	6621	14071	14071					-0.03055412505023014
KYVTVYNLI	9	Unmodified	_KYVTVYNLI_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8-MYEF2|1|fusion	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.8212280273438	2	556.82115	1111.62775	0.7147	0.00039796	-0.24692	-0.00013749	0.46778	0.00026047	556.8209513081916	64.793	1.1862	64.793	64.546	65.732	0					87	33	4	0	0	0	0.005983	2	14784	14784;14896		79.596	33.897	1	1254500			10053	2914	6570	6622	14072;14073	14072					0.07639773171217712
KYVTVYNLI	9	Unmodified	_KYVTVYNLI_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8-MYEF2|1|fusion	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.82177734375	2	556.82115	1111.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.452	1	65.452	64.952	65.952	0								0	0	0	0.13038	1	15023	15023		28.495	3.8206	1				10054	2914	6570	6622	14074	14074					0.07639773171217712
KYVYVVTEL	9	Unmodified	_KYVYVVTEL_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7982788085938	2	557.313158	1112.61176	0.22658	0.00012627	0.59789	0.00033321	0.82447	0.00045949	557.3136641727772	58.314	0.21702	58.314	58.256	58.473	0					12	8	2	0	0	0	0.24767	1	12865	12865		13.042	2.9685	1	42508			10055	4694	6571	6623	14075	14075					0.05996066934335431
KYVYVVTEL	9	Unmodified	_KYVYVVTEL_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7984008789062	2	557.313158	1112.61176	0.44961	0.00025058	0.90359	0.00050358	1.3532	0.00075416	557.3129587941415	58.193	0.16397	58.264	58.184	58.348	0.070477					12	5	3	0	0	0	0.22247	1	12693	12693		20.415	11.031	1	61375			10056	4694	6571	6623	14076	14076					0.05996066934335431
KYWDTFYKI	9	Unmodified	_KYWDTFYKI_					0	0	0		nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8;ENSG00000123600|ENST00000375258|METTL8;ENST00000460539.5_1_2:172188347-172248586:-|nuORF	nc|ENSG00000123600|Q9H825-2|METTL8	nc|ENSG00000123600|Q9H825-2|METTL8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7689819335938	2	632.324057	1262.63356	0.011493	7.2671E-06	-0.43677	-0.00027618	-0.42528	-0.00026891	632.3235582620716	59.374	0.48417	59.374	59.144	59.628	0					23	18	2	0	0	0	0.24438	1	13138	13138		13.615	6.5131	1	135130			10057	2226	6572	6624	14077	14077					0.012748716828809847
KYWDTFYKI	9	Unmodified	_KYWDTFYKI_					0	0	0		nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8;ENSG00000123600|ENST00000375258|METTL8;ENST00000460539.5_1_2:172188347-172248586:-|nuORF	nc|ENSG00000123600|Q9H825-2|METTL8	nc|ENSG00000123600|Q9H825-2|METTL8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.7691650390625	2	632.324057	1262.63356	0.17918	0.0001133	0.032553	2.0584E-05	0.21174	0.00013389	632.324116942612	59.215	0.40969	59.288	59.137	59.546	0.072338					23	15	2	0	0	0	0.25594	1	12988	12988		4.897	2.5943	1	115080			10058	2226	6572	6624	14078	14078					0.012748716828809847
KYWDVPPPGF	10	Unmodified	_KYWDVPPPGF_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3031616210938	2	603.303124	1204.5917	0.80775	0.00048732	-1.1193	-0.00067526	-0.31152	-0.00018794	603.3024459940098	65.256	3.2217	65.256	63.142	66.364	0					231	115	3	0	0	0	0.07941	3	15004	14789;14817;15004		49.554	34.306	1	785950			10059	659	6573	6625	14079;14080;14081	14081					-0.002416840056412184
KYWDVPPPGF	10	Unmodified	_KYWDVPPPGF_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3034057617188	2	603.303124	1204.5917	0.70822	0.00042727	-0.86533	-0.00052206	-0.15711	-9.4786E-05	603.3024635737972	65.273	2.6716	65.341	63.758	66.429	0.068916					240	99	3	0	0	0	0.12844	3	14911	14642;14911;15110		41.956	26.707	1	886440			10060	659	6573	6625	14082;14083;14084	14083					-0.002416840056412184
KYWFQNVR	8	Unmodified	_KYWFQNVR_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.800048828125	2	570.801083	1139.58761	-0.58529	-0.00033408	-1.374	-0.00078426	-1.9592	-0.0011183	570.8003046713136	41.529	0.74277	41.529	41.225	41.968	0					50	26	3	0	0	0	0.53494	1	7751	7751		4.756	0.81161	1	68936	+		10061	8423	6574	6626	14085	14085					0.023402712913139112
KYWFQNVR	8	Unmodified	_KYWFQNVR_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2341918945312	2	570.801083	1139.58761	-0.39767	-0.00022699	-1.1476	-0.00065503	-1.5452	-0.00088202	570.8004336129897	41.438	0.78805	41.528	41.153	41.941	0.089767					59	30	3	0	0	0	0.3576	1	7584	7584		4.756	0.81161	1	110270	+		10062	8423	6574	6626	14086	14086					0.023402712913139112
KYWPLFVLF	9	Unmodified	_KYWPLFVLF_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.84521484375	2	606.844428	1211.6743	0.53098	0.00032222	0.59963	0.00036388	1.1306	0.0006861	606.844622021339	95.375	0.62392	95.375	95.228	95.852	0					44	26	3	0	0	0	0.14444	2	24120	24120;24167		34.102	21.862	1	742480			10063	1421	6575	6627	14087;14088	14087					0.0769325779317569
KYWPLFVLF	9	Unmodified	_KYWPLFVLF_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.3468017578125	2	606.844428	1211.6743	0.59795	0.00036286	0.72006	0.00043696	1.318	0.00079982	606.8445666450771	95.348	0.38701	95.387	95.193	95.58	0.038872					43	16	4	0	0	0	0.11198	2	23948	23948;23990		32.305	14.171	1	882010			10064	1421	6575	6627	14089;14090	14089					0.0769325779317569
KYWTLNEF	8	Unmodified	_KYWTLNEF_					0	0	0			REV__nc|ENSG00000128052|P35968-2|KDR	REV__nc|ENSG00000128052|P35968-2|KDR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7852172851562	2	550.7742	1099.53385	0.44417	0.00024464	0.0061369	3.38E-06	0.45031	0.00024802	550.7741407267861	48.382	0.41672	48.462	48.248	48.665	0.080032					25	13	2	0	0	0	0.48462	1	9737	9737		14.838	0	1	154200	+		10065	9010	6576	6628	14091	14091					-0.011939459310497114
KYYAIEVSPA	10	Unmodified	_KYYAIEVSPA_					0	0	0		tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3013305664062	2	570.800414	1139.58628	-0.58529	-0.00033408	-0.20245	-0.00011556	-0.78774	-0.00044964	570.8003046713136	41.529	0.74277	41.529	41.225	41.968	0					50	26	3	0	0	0	0.44496	1	7810	7810		5.7319	0.43497	1	68936			10066	13660	6577	6629	14092	14092					0.022065924119033298
KYYEGTETLF	10	Unmodified	_KYYEGTETLF_					0	0	0			REV__ENSG00000108094|ENST00000374749|CUL2	REV__ENSG00000108094|ENST00000374749|CUL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.801513671875	2	625.800611	1249.58667	-0.21848	-0.00013673	1.2161	0.00076105	0.99764	0.00062433	625.801033038482	72.583	0.70333	72.583	72.381	73.084	0					47	24	3	0	0	0	0.43214	1	17235	17235		8.1555	0.24537	1	271970	+		10067	8610	6578	6630	14093	14093					-0.028140326588982134
KYYIDPPFK	9	Unmodified	_KYYIDPPFK_					0	0	0			REV__ENSG00000166323|ENST00000393084|C11orf65	REV__ENSG00000166323|ENST00000393084|C11orf65	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	0.7528	0.000441	-0.19716	-0.0001155	0.55564	0.0003255	585.8132146500172	98.764	0.69486	98.764	98.471	99.166	0					57	44	2	0	0	0	0.26104	1	25147	25147		11.495	3.5846	1	139450	+		10068	10071	6579	6631	14094	14094					0.03407486654168679
KYYKEVQTV	9	Unmodified	_KYYKEVQTV_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3134765625	2	579.313689	1156.61282	-0.040276	-2.3332E-05	-0.28981	-0.00016789	-0.33008	-0.00019122	579.3133530360103	31.841	0.48363	31.841	31.676	32.16	0					33	19	2	0	0	0	0.32614	1	4860	4860		3.2813	0.28607	1	38524			10069	1745	6580	6632	14095	14095					0.040782813032365084
KYYKEVQTV	9	Unmodified	_KYYKEVQTV_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3134765625	2	579.313689	1156.61282	0.060561	3.5084E-05	0.10468	6.064E-05	0.16524	9.5724E-05	579.3134915930374	31.786	0.42976	31.86	31.697	32.127	0.07378					28	19	2	0	0	0	0.32614	1	4723	4723		3.2813	0.28607	1	38028			10070	1745	6580	6632	14096	14096					0.040782813032365084
KYYQTPRLWLF	11	Unmodified	_KYYQTPRLWLF_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000467275.1_1_3:112256557-112257010:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.9444580078125	3	505.61	1513.80817	0.36668	0.00018539	-0.32926	-0.00016648	0.037413	1.8916E-05	505.60981725673713	68.731	0.72193	68.731	68.469	69.191	0					79	26	4	0	0	0	0.39319	1	16025	16025		5.8681	1.7515	1	603840			10071	3228	6581	6633	14097	14097					0.07181871828061048
KYYQTPRLWLF	11	Unmodified	_KYYQTPRLWLF_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000467275.1_1_3:112256557-112257010:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.6100158691406	3	505.61	1513.80817	0.26105	0.00013199	-0.1435	-7.2557E-05	0.11754	5.9431E-05	505.6098673029119	68.643	0.68959	68.705	68.452	69.142	0.062126					75	25	4	0	0	0	0.36067	1	15849	15849		11.065	6.9487	1	518460			10072	3228	6581	6633	14098	14098					0.07181871828061048
KYYRDFSIL	9	Unmodified	_KYYRDFSIL_					0	0	0			REV__ENSG00000174944|ENST00000309170|P2RY14	REV__ENSG00000174944|ENST00000309170|P2RY14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2994384765625	2	602.821681	1203.62881	0.39079	0.00023558	-2.536	-0.0015288	-2.1452	-0.0012932	602.8202819360574	59.691	0.36544	59.763	59.623	59.988	0.072338					29	14	3	0	0	0	0.25594	1	13159	13159		4.897	0.95262	1	137630	+		10073	10365	6582	6634	14099	14099					0.035139875401455356
KYYRQTLLF	9	Unmodified	_KYYRQTLLF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.3455200195312	2	616.345323	1230.67609	-0.32906	-0.00020282	0.4444	0.0002739	0.11534	7.1089E-05	616.3454576804567	48.869	0.59653	48.869	48.656	49.253	0					53	20	3	0	0	0	0.11936	2	9951	9951;10001		36.506	19.564	1	281720			10074	2010	6583	6635	14100;14101	14100					0.0699826681113791
KYYRQTLLF	9	Unmodified	_KYYRQTLLF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.3453979492188	2	616.345323	1230.67609	-0.33159	-0.00020438	0.62047	0.00038242	0.28888	0.00017805	616.3455394447026	48.733	0.58268	48.809	48.633	49.216	0.076607					48	20	3	0	0	0	0.097948	2	9793	9793;9845		41.956	22.594	1	316170			10075	2010	6583	6635	14102;14103	14102					0.0699826681113791
LAAAAAAAAGR	11	Unmodified	_LAAAAAAAAGR_					0	0	0			REV__ENST00000444995.7_1_22:25777521-25801336:-|nuORF	REV__ENST00000444995.7_1_22:25777521-25801336:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2642517089844	2	457.264333	912.514114	0.43652	0.0001996	-0.24791	-0.00011336	0.18861	8.6244E-05	457.2641145547303	76.292	2.7408	76.292	76.041	78.782	0					250	108	3	0	0	0	0.40453	1	18320	18320		3.2813	0	1	989850	+		10076	9143	6584	6636	14104	14104					0.05435722848835667
LAAAGRRGP	9	Unmodified	_LAAAGRRGP_					0	0	0			REV__ENSG00000170275|ENST00000320954|CRTAP	REV__ENSG00000170275|ENST00000320954|CRTAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.7588806152344	2	434.759218	867.503883	0.17057	7.4156E-05	-0.035744	-1.554E-05	0.13482	5.8616E-05	434.75913448430816	82.559	1.1694	82.581	82.27	83.44	0.021744					91	41	4	0	0	0	0.3182	1	20035	20035		4.3292	0	1	1727800	+		10077	10207	6585	6637	14105	14105					0.06483159914273529
LAAAKQGSKQ	10	Unmodified	_LAAAKQGSKQ_					0	0	0			REV__ENST00000373068.6_3_9:130870893-130871202:+|nuORF	REV__ENST00000373068.6_3_9:130870893-130871202:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.29071044921875	2	501.290548	1000.56654	0.30809	0.00015444	0.07228	3.6233E-05	0.38037	0.00019067	501.2904433310158	78.764	2.4673	78.764	77.555	80.022	0					159	85	3	0	0	0	0.44496	1	19174	19174		5.7319	0.97584	1	917630	+		10078	11616	6586	6638	14106	14106					0.06628261191804086
LAAAPLTRRA	10	Unmodified	_LAAAPLTRRA_					0	0	0			REV__ENST00000343218.9_2_5:146889424-146889604:-|nuORF	REV__ENST00000343218.9_2_5:146889424-146889604:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3528442382812	2	520.322183	1038.62981	-0.034255	-1.7824E-05	-0.61845	-0.00032179	-0.6527	-0.00033962	520.321551873933	112.15	0.29903	112.15	112.04	112.34	0					40	32	2	0	0	0	0.31747	1	28702	28702		5.7319	2.1354	1	488900	+		10079	11473	6587	6639	14107	14107					0.11204246699708165
LAAARPRN	8	Unmodified	_LAAARPRN_					0	0	0			REV__nc|nan|Q2M2W7-2|C17orf58	REV__nc|nan|Q2M2W7-2|C17orf58	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.75921630859375	2	434.759218	867.503883	0.17057	7.4156E-05	-0.035744	-1.554E-05	0.13482	5.8616E-05	434.75913448430816	82.559	1.1694	82.581	82.27	83.44	0.021744					91	41	4	0	0	0	0.52502	1	20082	20082		9.3474	1.4373	1	1727800	+		10080	10710	6588	6640	14108	14108					0.06483159914273529
LAAARSRSV	9	Unmodified	_LAAARSRSV_					0	0	0			REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B	REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7777404785156	2	465.777608	929.540663	0.34572	0.00016103	-0.23161	-0.00010788	0.11412	5.3154E-05	465.77738982535624	76.225	0.86461	76.225	76.11	76.975	0					45	33	2	0	0	0	0.32375	2	18352	18352;18403		3.5965	1.5367	1	612650	+		10081	12858	6589	6641	14109;14110	14109					0.07307411740180214
LAAARSRSV	9	Unmodified	_LAAARSRSV_					0	0	0			REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B	REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7776184082031	2	465.777608	929.540663	0.28327	0.00013194	-0.21983	-0.00010239	0.063442	2.955E-05	465.777423347122	77.696	1.4809	77.696	77.365	78.846	0					115	52	3	0	0	0	0.30005	4	18724	18724;18776;18825;18877		6.7232	6.7232	1	419260	+		10082	12858	6589	6641	14111;14112;14113;14114	14111					0.07307411740180214
LAAARSRSV	9	Unmodified	_LAAARSRSV_					0	0	0			REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B	REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7772521972656	2	465.777608	929.540663	0.22737	0.0001059	-0.30741	-0.00014318	-0.080036	-3.7279E-05	465.7773929697119	77.292	1.9772	77.327	77.017	78.994	0.034485					128	74	3	0	0	0	0.32375	1	18756	18756		3.5965	1.5367	1	829610	+		10083	12858	6589	6641	14115	14115					0.07307411740180214
LAAAVNRH	8	Unmodified	_LAAAVNRH_					0	0	0			REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF	REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.245849609375	2	426.245944	850.477334	0.51791	0.00022076	-0.43465	-0.00018527	0.083261	3.549E-05	426.2456911729508	85.234	0.59003	85.257	85.007	85.597	0.023125					39	24	2	0	0	0	0.53817	1	20883	20883		2.5775	0	1	215720	+		10084	11865	6590	6642	14116	14116					0.0461147102294035
LAACYMGATLN	11	Unmodified	_LAACYMGATLN_					0	0	0			REV__ENSG00000169194|ENST00000304506|IL13	REV__ENSG00000169194|ENST00000304506|IL13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.26416015625	2	564.264827	1126.5151	0.34339	0.00019376	-0.57245	-0.00032301	-0.22906	-0.00012925	564.2643459820431	53.508	0.68103	53.508	53.361	54.042	0					37	25	2	0	0	0	0.26943	1	11382	11382		21.537	2.175	1	139510	+		10085	10163	6591	6643	14117	14117					-0.04309566888764493
LAAPLRHAER	10	Unmodified	_LAAPLRHAER_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3302612304688	2	567.330539	1132.64652	0.13865	7.8661E-05	-0.21875	-0.0001241	-0.080096	-4.5441E-05	567.3303349058168	86.524	2.9324	86.524	85.605	88.537	0					378	115	5	0	0	0	0.42335	2	21737	21303;21737		9.3831	5.7319	1	7160200			10086	3430	6592	6644	14118;14119	14119					0.08550747585650242
LAAPLRHAER	10	Unmodified	_LAAPLRHAER_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3304443359375	2	567.330539	1132.64652	0.2232	0.00012663	-0.32185	-0.0001826	-0.098654	-5.5969E-05	567.330282121425	86.461	2.8884	86.489	85.666	88.554	0.027367					440	114	5	0	0	0	0.42335	1	21491	21491		9.3831	3.1773	1	7811600			10087	3430	6592	6644	14120	14120					0.08550747585650242
LACESERRM	9	Unmodified	_LACESERRM_					0	0	0		ENST00000592634.5_1_19:5895897-5896059:-|nuORF	ENST00000592634.5_1_19:5895897-5896059:-|nuORF	ENST00000592634.5_1_19:5895897-5896059:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2899169921875	2	547.757701	1093.50085	0.48914	0.00026793	1.3985	0.00076605	1.8877	0.001034	547.7582453196023	91.651	0.57885	91.651	91.348	91.927	0					86	21	6	0	0	0	0.23975	1	22932	22932		14.838	4.0143	1	686910			10088	7272	6593	6645	14121	14121					-0.04216219317049763
LADAVWSDL	9	Unmodified	_LADAVWSDL_					0	0	0			REV__ENST00000548520.1_1_12:104283206-104286955:-|nuORF	REV__ENST00000548520.1_1_12:104283206-104286955:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.75103759765625	2	495.250557	988.486562	0.55052	0.00027264	-2.137	-0.0010583	-1.5865	-0.00078569	495.2488549305178	55.859	0.28718	55.859	55.692	55.979	0					18	9	3	0	0	0	0.30005	1	12103	12103		6.7232	0	1	54231	+		10089	12426	6594	6646	14122	14122					-0.00814225202043417
LADEVITVF	9	Unmodified	_LADEVITVF_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7767333984375	2	503.776408	1005.53826	0.73263	0.00036908	-0.085217	-4.293E-05	0.64741	0.00032615	503.7762285111983	80.109	0.80347	80.109	79.842	80.646	0					67	27	4	0	0	0	0.0087214	3	19472	19472;19520;19568		71.134	22.788	1	1561000			10090	1116	6595	6647	14123;14124;14125	14123					0.03571518491855841
LADEVITVF	9	Unmodified	_LADEVITVF_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.77655029296875	2	503.776408	1005.53826	0.50644	0.00025513	0.061166	3.0814E-05	0.56761	0.00028595	503.77630887419446	80.097	0.89281	80.124	79.851	80.744	0.026436					80	31	4	0	0	0	0.0053304	2	19352	19300;19352		81.613	33.267	1	1347600			10091	1116	6595	6647	14126;14127	14127					0.03571518491855841
LADEVKLRQF	10	Unmodified	_LADEVKLRQF_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.8901672363281	3	406.89955	1217.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.422	1	35.422	34.922	35.922	0								0	0	0	0.33687	1	5913	5913		3.8763	0.55669	1		+		10092	10172	6596	6648	14128	14128					0.07669061460160265
LADGLKVVL	9	Unmodified	_LADGLKVVL_					0	0	0		ENST00000533277.5_1_11:66611269-66612734:+|nuORF;ENSG00000173653|ENST00000309657|RCE1	ENST00000533277.5_1_11:66611269-66612734:+|nuORF	ENST00000533277.5_1_11:66611269-66612734:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.2972412109375	2	464.29731	926.580068	0.3988	0.00018516	-0.32751	-0.00015206	0.071287	3.3098E-05	464.29690553770723	61.262	0.33243	61.262	61.086	61.418	0					20	11	3	0	0	0	0.12214	1	13748	13748		27.629	3.6082	1	153490			10093	4553	6597	6649	14129	14129					0.1138411897103424
LADGPKNNK	9	Unmodified	_LADGPKNNK_					0	0	0			REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF	REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7613525390625	2	478.761623	955.508694	-0.18113	-8.6718E-05	0.56967	0.00027274	0.38854	0.00018602	478.7616998199227	35.055	0.67289	35.055	34.776	35.449	0					46	23	3	0	0	0	0.24021	1	5781	5781		13.906	0.86358	1	113240	+		10094	10366	6598	6650	14130	14130					0.029159992663721823
LADGPKNNK	9	Unmodified	_LADGPKNNK_					0	0	0			REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF	REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7615051269531	2	478.761623	955.508694	-0.15937	-7.6302E-05	0.43424	0.0002079	0.27487	0.0001316	478.7616655606999	35.02	0.65134	35.099	34.755	35.407	0.078827					42	26	2	0	0	0	0.24021	1	5638	5638		13.906	0.86358	1	90760	+		10095	10366	6598	6650	14131	14131					0.029159992663721823
LADHYPPP	8	Unmodified	_LADHYPPP_					0	0	0			REV__ENSG00000178233|ENST00000451188|TMEM151B	REV__ENSG00000178233|ENST00000451188|TMEM151B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.22454833984375	2	455.226885	908.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.139	1	96.139	95.639	96.639	0								0	0	0	0.38822	1	24372	24372		5.2307	0.90143	1		+		10096	10444	6599	6651	14132	14132					-0.018664596823896318
LADIEIHSI	9	Unmodified	_LADIEIHSI_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7799377441406	2	505.779482	1009.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.928	1	56.928	56.428	57.428	0								0	0	0	0.19239	1	12426	12426		19.257	7.6167	1				10097	710	6600	6652	14133	14133					0.04002036723386482
LADKERVAA	9	Unmodified	_LADKERVAA_					0	0	0		ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.777099609375	2	486.777274	971.539994	-0.48627	-0.00023671	0.20129	9.7985E-05	-0.28498	-0.00013872	486.77735535712344	20.992	0.56336	20.992	20.838	21.402	0					132	61	3	0	0	0	0.034744	2	1725	1725;1757		47.732	5.8923	1	151620			10098	4169	6601	6653	14134;14135	14134					0.053085723004642205
LADKERVAA	9	Unmodified	_LADKERVAA_					0	0	0		ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7771301269531	2	486.777274	971.539994	-0.10235	-4.9824E-05	-0.070271	-3.4207E-05	-0.17263	-8.403E-05	486.77719359900505	20.828	0.45324	20.927	20.783	21.236	0.099499					110	50	3	0	0	0	0.12515	2	1622	1590;1622		27.223	5.6863	1	167450			10099	4169	6601	6653	14136;14137	14137					0.053085723004642205
LADLGASGPR	10	Unmodified	_LADLGASGPR_					0	0	0		ENST00000307422.9_2_19:10370504-10370603:+|nuORF	ENST00000307422.9_2_19:10370504-10370603:+|nuORF	ENST00000307422.9_2_19:10370504-10370603:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7041931152344	2	478.761623	955.508694	-0.15937	-7.6302E-05	0.43424	0.0002079	0.27487	0.0001316	478.7616655606999	35.02	0.65134	35.099	34.755	35.407	0.078827					42	26	2	0	0	0	0.31818	1	5734	5734		2.7352	0.89096	1	90760			10100	5987	6602	6654	14138	14138					0.029159992663721823
LADRGNPLT	9	Unmodified	_LADRGNPLT_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.76165771484375	2	478.761623	955.508694	-0.15937	-7.6302E-05	0.43424	0.0002079	0.27487	0.0001316	478.7616655606999	35.02	0.65134	35.099	34.755	35.407	0.078827					42	26	2	0	0	0	0.17428	1	5679	5679		21.537	2.175	1	90760	+		10101	10442	6603	6655	14139	14139					0.029159992663721823
LADSQGPLR	9	Unmodified	_LADSQGPLR_					0	0	0		ENST00000486101.1_1_17:73894933-73895551:-|nuORF	ENST00000486101.1_1_17:73894933-73895551:-|nuORF	ENST00000486101.1_1_17:73894933-73895551:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7617492675781	2	478.761623	955.508694	-0.18113	-8.6718E-05	0.56967	0.00027274	0.38854	0.00018602	478.7616998199227	35.055	0.67289	35.055	34.776	35.449	0					46	23	3	0	0	0	0.15282	1	5829	5829		24.021	0	1	113240			10102	6783	6604	6656	14140	14140					0.029159992663721823
LAEDDVEAVEI	11	Unmodified	_LAEDDVEAVEI_					0	0	0		tr|U7T8C8|U7T8C8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00009PE=4SV=1	tr|U7T8C8|U7T8C8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00009PE=4SV=1	tr|U7T8C8|U7T8C8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00009PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7793579101562	2	601.792983	1201.57141	0.25184	0.00015156	3.6003	0.0021667	3.8522	0.0023182	601.7952630968134	49.267	0.27123	49.344	49.185	49.456	0.076603					15	9	2	0	0	0	0.38057	1	9970	9970		8.7454	0.58988	1	59039			10103	13745	6605	6657	14141	14141					-0.021309442467554618
LAEGLRTVL	9	Unmodified	_LAEGLRTVL_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2978820800781	2	486.297842	970.581131	0.2624	0.0001276	0.023683	1.1517E-05	0.28608	0.00013912	486.2977496634848	53.842	0.53138	53.842	53.632	54.164	0					43	18	3	0	0	0	0.029591	2	11470	11470;11516		51.415	9.4597	1	422040			10104	1701	6606	6658	14142;14143	14142					0.09466333339935318
LAEGLRTVL	9	Unmodified	_LAEGLRTVL_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.298095703125	2	486.297842	970.581131	0.26412	0.00012844	0.027119	1.3188E-05	0.29124	0.00014163	486.297748670488	53.837	0.47762	53.902	53.701	54.179	0.06543					42	18	3	0	0	0	0.032232	2	11325	11325;11374		49.527	9.288	1	400770			10105	1701	6606	6658	14144;14145	14144					0.09466333339935318
LAELHLSQW	9	Unmodified	_LAELHLSQW_					0	0	0		ENST00000590152.1_1_19:9267483-9267588:+|nuORF	ENST00000590152.1_1_19:9267483-9267588:+|nuORF	ENST00000590152.1_1_19:9267483-9267588:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7931518554688	2	548.792924	1095.57129	0.30894	0.00016954	0.41995	0.00023047	0.72889	0.00040001	548.7930396525646	56.355	0.91142	56.355	56.134	57.046	0					80	33	4	0	0	0	0.083124	2	12270	12270;12315		36.127	2.1491	1	1731000			10106	7260	6607	6659	14146;14147	14146					0.027331453345595946
LAELHLSQW	9	Unmodified	_LAELHLSQW_					0	0	0		ENST00000590152.1_1_19:9267483-9267588:+|nuORF	ENST00000590152.1_1_19:9267483-9267588:+|nuORF	ENST00000590152.1_1_19:9267483-9267588:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7933349609375	2	548.792924	1095.57129	0.27432	0.00015055	0.43892	0.00024088	0.71324	0.00039142	548.7931292170238	56.303	0.79144	56.37	56.093	56.884	0.066448					72	29	4	0	0	0	0.03472	2	12116	12067;12116		47.749	9.7747	1	1594400			10107	7260	6607	6659	14148;14149	14149					0.027331453345595946
LAEQVLQR	8	Unmodified	_LAEQVLQR_					0	0	0			REV__nc|ENSG00000095383|Q9BYX2-6|TBC1D2	REV__nc|ENSG00000095383|Q9BYX2-6|TBC1D2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.781005859375	2	478.779816	955.545079	-0.14489	-6.937E-05	0.77587	0.00037147	0.63098	0.0003021	478.7800637262781	35.54	0.40228	35.54	35.334	35.736	0					23	13	2	0	0	0	0.53557	1	5983	5983		4.3292	0	1	65071	+		10108	8342	6608	6660	14150	14150					0.06552876163095789
LAEYFRLQY	9	Unmodified	_LAEYFRLQY_					0	0	0		nc|ENSG00000161973|Q96M95-2|CCDC42;ENSG00000161973|ENST00000293845|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.318359375	2	601.813856	1201.61316	0.44407	0.00026725	3.3115	0.0019929	3.7556	0.0022602	601.8166328728003	96.229	0.36229	96.229	95.936	96.299	0					29	18	2	0	0	0	0.32112	1	24417	24417		3.9444	0	1	128140			10109	3806	6609	6661	14151	14151					0.020417010231085442
LAFEFDPEL	9	Unmodified	_LAFEFDPEL_					0	0	0		ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.765869140625	2	540.76604	1079.51753	0.31865	0.00017231	-0.17642	-9.54E-05	0.14223	7.6913E-05	540.7656675549111	87.241	0.38068	87.268	87.151	87.532	0.027573					25	15	2	0	0	0	0.20358	1	21532	21532		18.146	10.236	1	99615			10110	1199	6610	6662	14152	14152					-0.019050718877906547
LAFEFDPEL	9	Unmodified	_LAFEFDPEL_					0	0	0		ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	540.76604	1079.51753	0.31621	0.000171	-0.36258	-0.00019607	-0.04637	-2.5076E-05	540.7655679500864	87.311	0.35767	87.311	87.141	87.498	0	0.021434	-0.00011076	NaN	18.146	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116410			10111	1199	6610	6662							-0.019050718877906547
LAFEQSLTQI	10	Unmodified	_LAFEQSLTQI_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7984008789062	2	575.311146	1148.60774	0.18095	0.0001041	1.3259	0.00076282	1.5069	0.00086692	575.3116171441976	50.358	0.41487	50.358	50.18	50.595	0					29	14	3	0	0	0	0.43503	1	10421	10421		7.609	1.4032	1	81603	+		10112	8467	6611	6663	14153	14153					0.039379774406370416
LAFEQSLTQI	10	Unmodified	_LAFEQSLTQI_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	575.311146	1148.60774	0.18095	0.0001041	1.3259	0.00076282	1.5069	0.00086692	575.3116171441976	50.358	0.41487	50.358	50.18	50.595	0	0.016286	0.00011684	NaN	7.609	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81603	+		10113	8467	6611	6663							0.039379774406370416
LAFGKPLVE	9	Unmodified	_LAFGKPLVE_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ENST00000547491.1_1_12:112186933-112194274:+|nuORF;ENST00000512792.2_1_12:112191278-112193633:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2894287109375	2	487.289485	972.564418	0.024779	1.2074E-05	-0.3198	-0.00015583	-0.29502	-0.00014376	487.28927355000314	58.811	0.89124	58.881	58.627	59.518	0.070477					67	33	3	0	0	0	0.17247	2	12908	12908;12965		21.747	4.8044	1	985720			10114	1697	6612	6664	14154;14155	14154					0.07703832454001258
LAFLLIKLFR	10	Unmodified	_LAFLLIKLFR_					0	0	0			REV__ENST00000272793.9_1_2:170930100-170936486:+|nuORF	REV__ENST00000272793.9_1_2:170930100-170936486:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7684936523438	2	617.407727	1232.8009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.583	1	93.583	93.083	94.083	0								0	0	0	0.33984	1	23594	23594		0.40072	0	1		+		10115	11277	6613	6665	14156	14156					0.19381184018288877
LAFQEDSRSTL	11	Unmodified	_LAFQEDSRSTL_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8203125	2	633.819867	1265.62518	0.14415	9.1363E-05	0.53309	0.00033788	0.67723	0.00042924	633.8202554732499	48.212	0.3297	48.212	48.07	48.399	0					20	10	3	0	0	0	0.28294	1	9779	9779		19.987	10.604	1	127600			10116	4928	6614	6666	14157	14157					0.00299272975621534
LAFQEDSRSTL	11	Unmodified	_LAFQEDSRSTL_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8204956054688	2	633.819867	1265.62518	0.41762	0.0002647	0.15179	9.6207E-05	0.56941	0.00036091	633.8201108173657	48.12	0.32262	48.2	48.034	48.357	0.080029					17	11	2	0	0	0	0.39523	1	9623	9623		5.4027	3.343	1	117200			10117	4928	6614	6666	14158	14158					0.00299272975621534
LAGPICLHL	9	Unmodified	_LAGPICLHL_					0	0	0			REV__ENST00000454607.5_1_20:34261567-34261603:-|nuORF	REV__ENST00000454607.5_1_20:34261567-34261603:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.77215576171875	2	468.770406	935.526258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.063	1	74.063	73.563	74.563	0								0	0	0	0.24995	1	17646	17646		9.3474	1.4373	1		+		10118	11939	6615	6667	14159	14159					0.0559162326767364
LAGSPAGDLQL	11	Unmodified	_LAGSPAGDLQL_					0	0	0			REV__ENSG00000179044|ENST00000314586|EXOC3L1	REV__ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2706909179688	2	521.282389	1040.55022	-0.10104	-5.2669E-05	0.092171	4.8047E-05	-0.0088669	-4.6222E-06	521.2823628038655	43.598	0.53185	43.598	43.327	43.859	0					40	19	3	0	0	0	0.297	1	8352	8352		18.373	0.23811	1	192180	+		10119	10471	6616	6668	14160	14160					0.031571352350511006
LAGSPAGDLQL	11	Unmodified	_LAGSPAGDLQL_					0	0	0			REV__ENSG00000179044|ENST00000314586|EXOC3L1	REV__ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2825317382812	2	521.282389	1040.55022	-0.069641	-3.6303E-05	0.22576	0.00011769	0.15612	8.1383E-05	521.2824329309691	43.47	0.45729	43.559	43.361	43.818	0.088921					36	16	3	0	0	0	0.28838	1	8205	8205		19.362	1.227	1	149810	+		10120	10471	6616	6668	14161	14161					0.031571352350511006
LAGSYVNRQI	10	Unmodified	_LAGSYVNRQI_					0	0	0			REV__ENST00000511708.1_1_4:83956843-83956915:+|nuORF	REV__ENST00000511708.1_1_4:83956843-83956915:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8270263671875	2	560.809105	1119.60366	-0.3995	-0.00022404	-0.10093	-5.6605E-05	-0.50043	-0.00028065	560.809026377918	42.275	1.6887	42.275	42.03	43.719	0					125	59	4	0	0	0	0.36006	1	8192	8192		16.149	1.7437	1	1413100	+		10121	12256	6617	6669	14162	14162					0.04863932737566756
LAHADEKSL	9	Unmodified	_LAHADEKSL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.26165771484375	2	492.261456	982.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.461	1	23.461	22.961	23.961	0								0	0	0	0.27935	1	2415	2415		3.2813	0	1				10122	5692	6618	6670	14163	14163					0.016405795465175288
LAHADEKSL	9	Unmodified	_LAHADEKSL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.26123046875	2	492.261456	982.50836	0.027182	1.3381E-05	-0.35994	-0.00017718	-0.33275	-0.0001638	492.26123404826524	23.255	0.2648	23.357	23.239	23.504	0.10178					40	25	2	0	0	0	0.31086	1	2247	2247		5.2969	0	1	33245			10123	5692	6618	6670	14164	14164					0.016405795465175288
LAHDGHLLHPF	11	Unmodified	_LAHDGHLLHPF_					0	0	0			REV__ENST00000589096.1_1_19:13869843-13870239:+|nuORF	REV__ENST00000589096.1_1_19:13869843-13870239:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.55572509765625	3	419.556007	1255.64619	0.080036	3.358E-05	-0.47456	-0.0001991	-0.39452	-0.00016552	419.555799054487	39.021	2.0539	39.107	38.461	40.515	0.08688					109	34	4	0	0	0	0.40453	1	6898	6898		1.3296	0	1	192940	+		10124	12570	6619	6671	14165	14165					0.028593278657808696
LAHFLKEV	8	Unmodified	_LAHFLKEV_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.779296875	2	478.781828	955.549102	-0.12702	-6.0813E-05	-3.6595	-0.0017521	-3.7865	-0.0018129	478.7798120400964	35.444	0.34277	35.522	35.339	35.682	0.078831					22	12	2	0	0	0	0.53926	1	5831	5831		1.8442	0	1	53886			10125	5131	6620	6672	14166	14166					0.0695496565680287
LAHLFMVL	8	Unmodified	_LAHLFMVL_					0	0	0		ENST00000457388.1_1_10:37627086-37627398:+|nuORF	REV__ENSG00000166133|ENST00000315616|RPUSD2	REV__ENSG00000166133|ENST00000315616|RPUSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.27667236328125	2	472.275324	942.536095	-0.014008	-6.6158E-06	3.2637	0.0015414	3.2497	0.0015347	472.2765545775599	38.908	0.38229	38.995	38.77	39.153	0.08688					29	14	3	0	0	0	0.53257	1	6851	6851		6.3541	2.4097	1	52360			10126	10062	6621	6673	14167	14167					0.06252811273066072
LAIAHDRSAV	10	Unmodified	_LAIAHDRSAV_					0	0	0			REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|81|3|anti-sense	REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|81|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2398071289062	2	526.795998	1051.57744	-0.18262	-9.6205E-05	-0.25325	-0.00013341	-0.43587	-0.00022962	526.7959575293813	27.029	0.28491	27.116	27.012	27.297	0.086699					23	20	2	0	0	0	0.31852	1	3316	3316		0.45834	0	1	10376	+		10127	13020	6622	6674	14168	14168					0.05371663566097595
LAIDGHEVI	9	Unmodified	_LAIDGHEVI_					0	0	0		nc|nan|Q8N6V4-4|C10orf53;nc|nan|Q8N6V4-3|C10orf53;nc|nan|Q8N6V4-2|C10orf53;ENSG00000178645|ENST00000374111|C10orf53	nc|nan|Q8N6V4-4|C10orf53	nc|nan|Q8N6V4-4|C10orf53	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.74810791015625	2	483.766374	965.518196	-0.081184	-3.9274E-05	-0.90613	-0.00043836	-0.98732	-0.00047763	483.76575256733344	49.308	0.33735	49.308	49.143	49.48	0					19	11	2	0	0	0	0.2491	1	10073	10073		8.5933	0	1	85843			10128	7643	6623	6675	14169	14169					0.03405767551907957
LAIDSYSIF	9	Unmodified	_LAIDSYSIF_					0	0	0			REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF	REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7677001953125	2	514.768583	1027.52261	0.85162	0.00043838	-2.0238	-0.0010418	-1.1722	-0.0006034	514.7673028046354	80.181	0.561	80.181	79.842	80.403	0					23	18	2	0	0	0	0.1182	1	19499	19499		28.487	1.2636	1	227210	+		10129	12259	6624	6676	14170	14170					0.009952319747981164
LAIDSYSIF	9	Unmodified	_LAIDSYSIF_					0	0	0			REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF	REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	514.768583	1027.52261	0.85162	0.00043838	-2.0238	-0.0010418	-1.1722	-0.0006034	514.7673028046354	80.181	0.561	80.181	79.842	80.403	0	0.009272	-4.3254E-05	NaN	28.487	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227210	+		10130	12259	6624	6676							0.009952319747981164
LAIDSYSIF	9	Unmodified	_LAIDSYSIF_					0	0	0			REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF	REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	514.768583	1027.52261	0.57394	0.00029544	-1.9567	-0.0010072	-1.3827	-0.00071178	514.767306355425	80.138	0.53069	80.162	79.849	80.38	0.024628	-0.009272	2.5873E-05	NaN	28.487	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150650	+		10131	12259	6624	6676							0.009952319747981164
LAIDTEERL	9	Unmodified	_LAIDTEERL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.287841796875	2	530.287671	1058.56079	0.20761	0.00011009	0.088958	4.7173E-05	0.29657	0.00015727	530.2876293959565	49.509	0.71005	49.509	49.34	50.05	0					47	24	3	0	0	0	0.0085356	1	10168	10168		71.708	29.752	1	434080			10132	1862	6625	6677	14171	14171					0.03385117889456524
LAIDTEERL	9	Unmodified	_LAIDTEERL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2880249023438	2	530.287671	1058.56079	0.2205	0.00011693	0.27167	0.00014406	0.49217	0.00026099	530.2877306744415	49.464	0.58951	49.541	49.282	49.871	0.076607					39	21	3	0	0	0	0.0045224	1	10011	10011		90.135	44.395	1	379340			10133	1862	6625	6677	14172	14172					0.03385117889456524
LAIETEAEL	9	Unmodified	_LAIETEAEL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7635192871094	2	494.763497	987.512442	0.63028	0.00031184	-0.077339	-3.8264E-05	0.55294	0.00027357	494.7633427379481	63.587	0.94762	63.587	63.317	64.264	0					48	32	3	0	0	0	0.0043613	2	14423	14423;14470		96.285	34.598	1	484400			10134	446	6626	6678	14173;14174	14173					0.01818624249574441
LAIETEAEL	9	Unmodified	_LAIETEAEL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.763671875	2	494.763497	987.512442	0.53289	0.00026366	0.032029	1.5847E-05	0.56492	0.0002795	494.76342173968465	63.474	0.50625	63.545	63.323	63.829	0.071018					39	17	3	0	0	0	0.0043613	2	14245	14245;14288		96.285	50.264	1	550110			10135	446	6626	6678	14175;14176	14175					0.01818624249574441
LAIPVFLTL	9	Unmodified	_LAIPVFLTL_					0	0	0		nc|ENSG00000134490|Q24JQ0-2|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241;nc|ENSG00000134490|Q24JQ0-3|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8186950683594	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.733	1	99.733	99.233	100.23	0								0	0	0	0.031888	1	25463	25463		56.541	2.9657	1				10136	2673	6627	6679	14177	14177					0.12781880010504665
LAIQKYIT	8	Unmodified	_LAIQKYIT_					0	0	0			REV__ENST00000581826.1_1_17:28766086-28769373:+|nuORF	REV__ENST00000581826.1_1_17:28766086-28769373:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7610168457031	2	475.289485	948.564418	-0.057162	-2.7168E-05	-0.18785	-8.9285E-05	-0.24502	-0.00011645	475.2891806735402	48.51	0.55051	48.51	48.251	48.801	0					40	18	3	0	0	0	0.35759	1	9887	9887		8.5933	0	1	140750	+		10137	12553	6628	6680	14178	14178					0.08807832453976516
LAKIKVLILII	11	Unmodified	_LAKIKVLILII_					0	0	0			REV__nc|ENSG00000005436|P16383-2|GCFC2	REV__nc|ENSG00000005436|P16383-2|GCFC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.95703125	2	618.95451	1235.89447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.077	1	29.155	28.655	29.655	0.078287								0	0	0	0.34212	1	3901	3901		0	0	1		+		10138	7936	6629	6681	14179	14179					0.28595483400772537
LALATEGGVL	10	Unmodified	_LALATEGGVL_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2767333984375	2	472.276575	942.538597	-0.054164	-2.558E-05	0.20377	9.6234E-05	0.1496	7.0654E-05	472.276560175651	38.992	0.52345	38.992	38.763	39.286	0					34	20	3	0	0	0	0.44246	1	6998	6998		6.2058	0	1	80107			10139	540	6630	6682	14180	14180					0.06502938211713172
LALCKKPLKPV	11	Unmodified	_LALCKKPLKPV_					0	0	0			REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.8627014160156	3	403.929905	1208.76789	-0.4215	-0.00017026	-1.0524	-0.00042508	-1.4739	-0.00059534	403.92937487249117	42.514	0.32308	42.604	42.431	42.754	0.089764					18	11	2	0	0	0	0.31101	1	7901	7901		0.45452	0.21867	1	18391	+		10140	10009	6631	6683	14181	14181					0.17185233903933295
LALETEWEL	9	Unmodified	_LALETEWEL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19566287-19566919:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2845458984375	2	552.284597	1102.55464	0.55165	0.00030467	-1.29	-0.00071246	-0.73837	-0.00040779	552.2837588457642	83.118	0.61291	83.118	82.872	83.485	0					51	20	3	0	0	0	0.0052407	1	20417	20417		81.89	23.211	1	503430			10141	2363	6632	6684	14182	14182					0.007465996579412604
LALETEWEL	9	Unmodified	_LALETEWEL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19566287-19566919:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2841796875	2	552.284597	1102.55464	0.45665	0.0002522	-1.1302	-0.00062417	-0.67352	-0.00037197	552.2838642100996	83.097	0.87231	83.119	82.823	83.696	0.021744					66	30	3	0	0	0	0.003963	1	20229	20229		103.75	51.48	1	433490			10142	2363	6632	6684	14183	14183					0.007465996579412604
LALFMDVVL	9	Unmodified	_LALFMDVVL_					0	0	0			REV__ENST00000392663.6_1_2:170350320-170356023:+|nuORF	REV__ENST00000392663.6_1_2:170350320-170356023:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8023376464844	2	510.793546	1019.57254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.038	1	85.061	84.561	85.561	0.023125								0	0	0	0.23452	1	20837	20837		12.532	0	1		+		10143	11694	6633	6685	14184	14184					0.06353643379100049
LALFSGLNRYL	11	Unmodified	_LALFSGLNRYL_					0	0	0			REV__ENST00000518820.1_1_8:143561046-143604069:+|nuORF	REV__ENST00000518820.1_1_8:143561046-143604069:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.911376953125	3	422.911679	1265.71321	0.4019	0.00016997	-0.36266	-0.00015337	0.039243	1.6596E-05	422.9114085275559	54.977	0.41106	55.042	54.903	55.314	0.065128					34	15	3	0	0	0	0.38555	1	11699	11699		3.8459	0.52627	1	144010	+		10144	10542	6634	6686	14185	14185					0.09097938356899249
LALFSGLNRYL	11	Unmodified	_LALFSGLNRYL_					0	0	0			REV__ENST00000518820.1_1_8:143561046-143604069:+|nuORF	REV__ENST00000518820.1_1_8:143561046-143604069:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	422.911679	1265.71321	0.4019	0.00016997	-0.36266	-0.00015337	0.039243	1.6596E-05	422.9114085275559	54.977	0.41106	55.042	54.903	55.314	0.065128	-0.0021484	0.00012347	NaN	3.8459	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144010	+		10145	10542	6634	6686							0.09097938356899249
LALIEVDYFF	10	Unmodified	_LALIEVDYFF_					0	0	0			REV__OR2M2|p.K338E|1|0.16|ENSG00000198601|chr1:248180997-248180997|A/G|missense_variant	REV__OR2M2|p.K338E|1|0.16|ENSG00000198601|chr1:248180997-248180997|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.55377197265625	3	410.553269	1228.63798	0.71866	0.00029505	0.39666	0.00016285	1.1153	0.0004579	410.5533644537416	69.922	1.5048	69.922	69.704	71.208	0					143	54	4	0	0	0	0.42184	1	16454	16454		9.544	2.4423	1	1409700	+		10146	12939	6635	6687	14186	14186					0.03280336105785864
LALLLLKLV	9	Unmodified	_LALLLLKLV_					0	0	0		nc|ENSG00000133731|P29218-2|IMPA1	nc|ENSG00000133731|P29218-2|IMPA1	nc|ENSG00000133731|P29218-2|IMPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.3636169433594	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.7	1	117.71	117.21	118.21	0.013062								0	0	0	0.2927	1	29739	29739		0.52476	0	1				10147	7505	6636	6688	14187	14187					0.21787018832640115
LALRFYEEW	9	Unmodified	_LALRFYEEW_					0	0	0			REV__ENSG00000186710|ENST00000335621|CFAP73	REV__ENSG00000186710|ENST00000335621|CFAP73	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.276123046875	2	613.813856	1225.61316	0.18778	0.00011526	-0.14654	-8.9947E-05	0.041241	2.5314E-05	613.8141925061719	74.48	0.85446	74.529	74.042	74.896	0.048546					38	30	2	0	0	0	0.23598	1	17533	17533		15.847	10.115	1	115520	+		10148	10712	6637	6689	14188	14188					0.009377010230764427
LALRREREPRQ	11	Unmodified	_LALRREREPRQ_					0	0	0			REV__ENST00000584528.5_1_17:56603677-56604185:-|nuORF	REV__ENST00000584528.5_1_17:56603677-56604185:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2707824707031	3	475.279536	1422.81678	0.012422	5.9041E-06	-2.1903	-0.001041	-2.1779	-0.0010351	475.2784361300541	56.639	0.62422	56.705	56.494	57.118	0.066452					31	22	2	0	0	0	0.31097	1	12171	12171		1.3296	0.11481	1	191080	+		10149	12558	6638	6690	14189	14189					0.1222823851726389
LALYIECW	8	Unmodified	_LALYIECW_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7544860839844	2	505.754421	1009.49429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.6	1	63.6	63.1	64.1	0								0	0	0	0.38081	1	14457	14457		26.341	1.6674	1		+		10150	9629	6639	6691	14190	14190					-0.010077892061303828
LAMEIFRVQ	9	Unmodified	_LAMEIFRVQ_					0	0	0		nc|ENSG00000039600|O94993-2|SOX30	nc|ENSG00000039600|O94993-2|SOX30	nc|ENSG00000039600|O94993-2|SOX30	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8047485351562	2	553.804977	1105.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.97	1	42.059	41.559	42.559	0.089764								0	0	0	0.27935	1	7760	7760		3.2813	0	1				10151	7449	6640	6692	14191	14191					0.046826624965888186
LAMHSWRW	8	Unmodified	_LAMHSWRW_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7689208984375	2	543.768729	1085.5229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.865	1	20.865	20.365	21.365	0								0	0	0	0.38822	1	1710	1710		0.79363	0	1				10152	2523	6641	6693	14192	14192					-0.016436267863127796
LANMFRFY	8	Unmodified	_LANMFRFY_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.264404296875	2	531.265487	1060.51642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.537	1	65.604	65.104	66.104	0.066872								0	0	0	0.38822	1	14903	14903		5.2307	0	1				10153	3526	6642	6694	14193	14193					-0.011415647376907145
LAPALKWVLML	11	Unmodified	_LAPALKWVLML_					0	0	0			REV__ENSG00000184254|ENST00000329841|ALDH1A3	REV__ENSG00000184254|ENST00000329841|ALDH1A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8859252929688	2	627.88577	1253.75699	0.27495	0.00017263	-1.019	-0.00063983	-0.74407	-0.00046719	627.8851817953946	95.534	0.64997	95.573	95.386	96.036	0.038864					47	31	2	0	0	0	0.40578	1	24039	24039		2.9952	1.3426	1	390430	+		10154	10628	6643	6695	14194	14194					0.1402583152967054
LAPAVTSQS	9	Unmodified	_LAPAVTSQS_					0	0	0		nc|ENSG00000257198|Q63HN1|SPATA31F2P;ENSG00000205108|ENST00000378788|FAM205A	nc|ENSG00000257198|Q63HN1|SPATA31F2P	nc|ENSG00000257198|Q63HN1|SPATA31F2P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2369689941406	2	437.23745	872.460347	0.63569	0.00027795	-1.6999	-0.00074325	-1.0642	-0.00046531	437.23656814266525	82.616	0.62669	82.616	82.364	82.99	0					42	21	3	0	0	0	0.32375	1	20254	20254		3.5965	0.70727	1	291910			10155	5507	6644	6696	14195	14195					0.019015056264720442
LAPHDVGVF	9	Unmodified	_LAPHDVGVF_					0	0	0		nc|ENSG00000132326|O15055-2|PER2;ENSG00000132326|ENST00000254657|PER2	nc|ENSG00000132326|O15055-2|PER2	nc|ENSG00000132326|O15055-2|PER2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7563171386719	2	477.75581	953.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.77	1	52.77	52.27	53.27	0								0	0	0	0.25992	1	11155	11155		7.2892	0	1				10156	2565	6645	6697	14196	14196					0.018458022430536403
LAPHLHPVL	9	Unmodified	_LAPHLHPVL_					0	0	0			REV__ENST00000309050.9_2_12:110479436-110479697:-|nuORF	REV__ENST00000309050.9_2_12:110479436-110479697:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.8037414550781	2	498.803094	995.591636	0.19603	9.7778E-05	1.6078	0.00080197	1.8038	0.00089975	498.80374634352347	48.755	0.93506	48.832	48.468	49.404	0.076607					58	32	3	0	0	0	0.31136	1	9754	9754		5.2307	2.6532	1	138520	+		10157	11368	6646	6698	14197	14197					0.09366360785031702
LAPKAYLTH	9	Unmodified	_LAPKAYLTH_					0	0	0			REV__TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	REV__TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8052062988281	2	507.292559	1012.57057	-0.056578	-2.8702E-05	-0.21834	-0.00011076	-0.27492	-0.00013946	507.29239475617635	46.419	0.99816	46.419	45.474	46.472	0					49	34	2	0	0	0	0.25809	1	8967	8967		2.3027	0	1	75949	+		10158	9828	6647	6699	14198	14198					0.06478350685495116
LAPQIILLIEL	11	Unmodified	_LAPQIILLIEL_					0	0	0		ENST00000461177.1_1_9:107526521-107531179:+|nuORF	ENST00000461177.1_1_9:107526521-107531179:+|nuORF	ENST00000461177.1_1_9:107526521-107531179:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.4025268554688	2	618.402307	1234.79006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.96	1	116.97	116.47	117.47	0.013062								0	0	0	0.33835	1	29620	29620		1.3295	0	1				10159	6609	6648	6700	14199	14199					0.18205736853383314
LAPVPSEVRS	10	Unmodified	_LAPVPSEVRS_					0	0	0			REV__ENST00000448363.2_1_6:71122572-71122758:-|nuORF	REV__ENST00000448363.2_1_6:71122572-71122758:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7963256835938	2	527.798206	1053.58186	0.40716	0.0002149	-3.206	-0.0016921	-2.7988	-0.0014772	527.796464145728	100.34	0.3786	100.34	100.19	100.57	0					33	21	2	0	0	0	0.45133	1	25655	25655		4.5289	1.5336	1	89083	+		10160	11913	6649	6701	14200	14200					0.05721127988999797
LAPVPSEVRS	10	Unmodified	_LAPVPSEVRS_					0	0	0			REV__ENST00000448363.2_1_6:71122572-71122758:-|nuORF	REV__ENST00000448363.2_1_6:71122572-71122758:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.798206	1053.58186	0.40716	0.0002149	-3.206	-0.0016921	-2.7988	-0.0014772	527.796464145728	100.34	0.3786	100.34	100.19	100.57	0	-0.031558	-0.00011463	NaN	4.5289	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89083	+		10161	11913	6649	6701							0.05721127988999797
LAPVPSEVRS	10	Unmodified	_LAPVPSEVRS_					0	0	0			REV__ENST00000448363.2_1_6:71122572-71122758:-|nuORF	REV__ENST00000448363.2_1_6:71122572-71122758:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	527.798206	1053.58186	0.44703	0.00023594	-2.814	-0.0014852	-2.367	-0.0012493	528.2981986773174	100.36	0.26231	100.4	100.24	100.5	0.042839	0.031558	0.00029913	NaN	4.5289	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90593	+		10162	11913	6649	6701							0.05721127988999797
LAQHLSVLD	9	Unmodified	_LAQHLSVLD_					0	0	0			REV__nc|ENSG00000158161|Q99504-2|EYA3	REV__nc|ENSG00000158161|Q99504-2|EYA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2800598144531	2	498.279649	994.544745	0.36625	0.00018249	-0.03036	-1.5128E-05	0.33589	0.00016736	498.27973063096914	48.377	0.39043	48.457	48.274	48.665	0.080029					37	12	4	0	0	0	0.26684	1	9740	9740		10.824	0	1	186840	+		10163	9798	6650	6702	14201	14201					0.04725456443236453
LAQQPPDA	8	Unmodified	_LAQQPPDA_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.21630859375	2	420.216517	838.418482	0.34827	0.00014635	-0.12238	-5.1427E-05	0.22589	9.4921E-05	420.2162927745398	51.095	1.2849	51.095	50.489	51.774	0					75	43	3	0	0	0	0.50815	1	10671	10671		11.64	2.2929	1	167440			10164	1884	6651	6703	14202	14202					-0.007190500620481544
LAQYRALHQQF	11	Unmodified	_LAQYRALHQQF_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.9136657714844	3	458.914083	1373.72042	-0.41933	-0.00019244	-1.6466	-0.00075563	-2.0659	-0.00094806	458.91384373165624	42.144	0.50193	42.234	42.018	42.52	0.089764					44	18	3	0	0	0	0.39678	1	7831	7831		5.0475	0.64137	1	65848	+		10165	10370	6652	6704	14203	14203					0.04850670957307557
LAQYRALHQQF	11	Unmodified	_LAQYRALHQQF_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	458.914083	1373.72042	-0.41933	-0.00019244	-1.6466	-0.00075563	-2.0659	-0.00094806	458.91384373165624	42.144	0.50193	42.234	42.018	42.52	0.089764	0.0060669	0.00021952	NaN	5.0475	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65848	+		10166	10370	6652	6704							0.04850670957307557
LARHGLLGW	9	Unmodified	_LARHGLLGW_					0	0	0			REV__ENST00000373672.7_1_1:32120449-32122662:-|nuORF	REV__ENST00000373672.7_1_1:32120449-32122662:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.28753662109375	2	511.798343	1021.58213	0.18796	9.6199E-05	-1.4134	-0.0007234	-1.2255	-0.0006272	511.7976454593258	52.474	0.37135	52.474	52.274	52.645	0					20	12	2	0	0	0	0.25809	1	11111	11111		2.3027	0.4585	1	68558	+		10167	11618	6653	6705	14204	14204					0.07220592499527356
LARRLRDLPE	10	Unmodified	_LARRLRDLPE_					0	0	0		IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant;ENSG00000177971|ENST00000403490|IMP3	IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8699340820312	2	619.870028	1237.7255	-0.27379	-0.00016972	-0.70277	-0.00043562	-0.97656	-0.00060534	619.8694051580126	86.462	0.45975	86.462	86.179	86.639	0					22	16	2	0	0	0	0.46746	1	21433	21433		1.4819	1.0236	1	74163			10168	4726	6654	6706	14205	14205					0.11614974819917734
LARRLRDLPE	10	Unmodified	_LARRLRDLPE_					0	0	0		IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant;ENSG00000177971|ENST00000403490|IMP3	IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8687133789062	2	619.870028	1237.7255	0.0013055	8.0924E-07	-1.0318	-0.00063961	-1.0305	-0.0006388	619.8693853646959	86.407	0.46904	86.432	86.117	86.586	0.025169					26	17	2	0	0	0	0.45794	1	21255	21255		3.2813	2.088	1	88646			10169	4726	6654	6706	14206	14206					0.11614974819917734
LASAALIGYP	10	Unmodified	_LASAALIGYP_					0	0	0			REV__nc|ENSG00000105173|P24864-2|CCNE1	REV__nc|ENSG00000105173|P24864-2|CCNE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2785339355469	2	488.279118	974.543683	-0.0030716	-1.4998E-06	0.25259	0.00012333	0.24952	0.00012184	488.2788372999769	72.962	0.28642	73.015	72.836	73.123	0.052567					14	9	2	0	0	0	0.43972	1	17183	17183		6.7232	0	1	59563	+		10170	8530	6655	6707	14207	14207					0.055392420743373805
LASAALIGYP	10	Unmodified	_LASAALIGYP_					0	0	0			REV__nc|ENSG00000105173|P24864-2|CCNE1	REV__nc|ENSG00000105173|P24864-2|CCNE1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	488.279118	974.543683	-0.10471	-5.113E-05	0.30091	0.00014693	0.1962	9.5798E-05	488.27915183683444	73.078	0.34558	73.078	72.883	73.228	0	0.03186	1.1218E-05	NaN	6.7232	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80563	+		10171	8530	6655	6707							0.055392420743373805
LASAALIGYP	10	Unmodified	_LASAALIGYP_					0	0	0			REV__nc|ENSG00000105173|P24864-2|CCNE1	REV__nc|ENSG00000105173|P24864-2|CCNE1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	488.279118	974.543683	-0.0030716	-1.4998E-06	0.25259	0.00012333	0.24952	0.00012184	488.2788372999769	72.962	0.28642	73.015	72.836	73.123	0.052567	-0.03186	-3.5968E-05	NaN	6.7232	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59563	+		10172	8530	6655	6707							0.055392420743373805
LASLTSIGAL	10	Unmodified	_LASLTSIGAL_					0	0	0			REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2840881347656	2	473.2844	944.554247	-0.60168	-0.00028476	0.2573	0.00012177	-0.34438	-0.00016299	473.28461030857096	40.804	1.2937	40.804	40.562	41.856	0					126	46	5	0	0	0	0.25965	2	7643	7643;7692		26.884	0	1	3353600	+		10173	13105	6656	6708	14208;14209	14208					0.079752247287729
LASLTSIGAL	10	Unmodified	_LASLTSIGAL_					0	0	0			REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2838134765625	2	473.2844	944.554247	-0.48453	-0.00022932	0.24622	0.00011653	-0.23831	-0.00011279	473.2845597266952	40.725	1.0501	40.814	40.546	41.596	0.089645					106	40	4	0	0	0	0.37232	1	7527	7527		14.838	0	1	2624400	+		10174	13105	6656	6708	14210	14210					0.079752247287729
LATKTEVAL	9	Unmodified	_LATKTEVAL_					0	0	0		nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-5|MAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.284423828125	2	473.2844	944.554247	-0.60168	-0.00028476	0.2573	0.00012177	-0.34438	-0.00016299	473.28461030857096	40.804	1.2937	40.804	40.562	41.856	0					126	46	5	0	0	0	0.0016755	3	7554	7502;7554;7598		117.76	35.231	1	3353600			10175	563	6657	6709	14211;14212;14213	14212					0.07975224728750163
LATKTEVAL	9	Unmodified	_LATKTEVAL_					0	0	0		nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-5|MAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.284423828125	2	473.2844	944.554247	-0.48453	-0.00022932	0.24622	0.00011653	-0.23831	-0.00011279	473.2845597266952	40.725	1.0501	40.814	40.546	41.596	0.089645					106	40	4	0	0	0	0.00066972	4	7385	7342;7385;7429;7478		128.93	46.403	1	2624400			10176	563	6657	6709	14214;14215;14216;14217	14215					0.07975224728750163
LATLIQDVF	9	Unmodified	_LATLIQDVF_					0	0	0			REV__ENSG00000256188|ENST00000539585|TAS2R30	REV__ENSG00000256188|ENST00000539585|TAS2R30	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2925109863281	2	510.292225	1018.5699	0.53697	0.00027401	-0.51369	-0.00026213	0.023282	1.1881E-05	510.29204303924496	92.533	0.49194	92.57	92.371	92.863	0.03653					24	17	2	0	0	0	0.28587	1	23110	23110		8.5933	0	1	88605	+		10177	11094	6658	6710	14218	14218					0.061355112458159056
LATWKDIPN	9	Unmodified	_LATWKDIPN_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000482818.1_1_22:29726183-29727937:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	ZNRF3-AP1B1|4|fusion;nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7689208984375	2	529.287474	1056.5604	0.3378	0.00017879	-4.0169	-0.0021261	-3.6791	-0.0019473	529.2852605073282	38.151	0.34359	38.151	37.988	38.332	0					15	11	2	0	0	0	0.25921	1	6783	6783		1.4819	0.15237	1	26027			10178	366;1176	6659	6711	14219	14219					0.034377429602727716
LATWKDIPN	9	Unmodified	_LATWKDIPN_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000482818.1_1_22:29726183-29727937:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	ZNRF3-AP1B1|4|fusion;nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	529.287474	1056.5604	0.3567	0.0001888	-3.9846	-0.002109	-3.6279	-0.0019202	529.2854357912081	38.052	0.31342	38.137	38.014	38.328	0.084476	-0.0071158	1.2257E-05	NaN	1.4819	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24719			10179	366;1176	6659	6711							0.034377429602727716
LAVFLVPLC	9	Unmodified	_LAVFLVPLC_					0	0	0			REV__nc|ENSG00000092096|Q8WUG5-3|SLC22A17	REV__nc|ENSG00000092096|Q8WUG5-3|SLC22A17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.79052734375	2	487.790807	973.56706	0.34464	0.00016811	-0.17496	-8.5342E-05	0.16969	8.2772E-05	487.79063746306986	91.999	0.37334	91.999	91.84	92.213	0					18	13	2	0	0	0	0.33356	1	23124	23124		2.3027	1.5091	1	121630	+		10180	8327	6660	6712	14220	14220					0.0792196458729677
LAVFLVPLC	9	Unmodified	_LAVFLVPLC_					0	0	0			REV__nc|ENSG00000092096|Q8WUG5-3|SLC22A17	REV__nc|ENSG00000092096|Q8WUG5-3|SLC22A17	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	487.790807	973.56706	0.34464	0.00016811	-0.17496	-8.5342E-05	0.16969	8.2772E-05	487.79063746306986	91.999	0.37334	91.999	91.84	92.213	0	-0.0029818	7.2947E-05	NaN	2.3027	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121630	+		10181	8327	6660	6712							0.0792196458729677
LAVLDWEL	8	Unmodified	_LAVLDWEL_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.76593017578125	2	479.765843	957.517133	-0.17035	-8.1728E-05	0.11228	5.3869E-05	-0.058067	-2.7859E-05	479.76590339694593	90.982	0.46163	91.017	90.763	91.225	0.035446					25	16	2	0	0	0	0.28175	2	22623	22623;22677		36.044	0	1	138910			10182	1697	6661	6713	14221;14222	14221					0.03667553183004202
LAVLDWEL	8	Unmodified	_LAVLDWEL_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	479.765843	957.517133	0.083232	3.9932E-05	-0.2922	-0.00014019	-0.20896	-0.00010025	479.76559203222894	90.957	0.36708	90.957	90.785	91.152	0	-0.030189	-0.00023217	NaN	36.044	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206650			10183	1697	6661	6713							0.03667553183004202
LAVMNHRN	8	Unmodified	_LAVMNHRN_					0	0	0			REV__tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	REV__tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2715148925781	2	477.750536	953.486519	-0.37946	-0.00018129	4.0709	0.0019449	3.6914	0.0017636	477.7518814045877	43.414	0.50422	43.414	43.091	43.595	0					35	17	4	0	0	0	0.35759	1	8362	8362		10.183	0.83596	1	57874	+		10184	13122	6662	6714	14223	14223					0.00791496316969642
LAVMNHRN	8	Unmodified	_LAVMNHRN_					0	0	0			REV__tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	REV__tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2714538574219	2	477.750536	953.486519	-0.31224	-0.00014917	4.0658	0.0019424	3.7535	0.0017933	477.75187639908904	43.278	0.3705	43.368	43.162	43.533	0.089764					24	12	3	0	0	0	0.35759	1	8176	8176		10.183	7.8807	1	32472	+		10185	13122	6662	6714	14224	14224					0.00791496316969642
LAVMTDTRRF	10	Unmodified	_LAVMTDTRRF_					0	0	0		nc|ENSG00000187144|Q7Z572-2|SPATA21;ENSG00000187144|ENST00000335496|SPATA21	nc|ENSG00000187144|Q7Z572-2|SPATA21	nc|ENSG00000187144|Q7Z572-2|SPATA21	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.9042663574219	3	403.885135	1208.63358	0.28021	0.00011317	3.334	0.0013465	3.6142	0.0014597	404.22070902775897	53.891	0.16878	53.956	53.838	54.007	0.065128					6	5	2	0	0	0	0.31794	1	11336	11336		1.7423	0.41263	1	57866			10186	5111	6663	6715	14225	14225					0.03760548411241871
LAVSENHIL	9	Unmodified	_LAVSENHIL_					0	0	0		CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant;nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant	CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.2799377441406	2	498.279649	994.544745	0.2831	0.00014106	0.40499	0.0002018	0.6881	0.00034286	498.27977236025964	48.477	0.57916	48.477	48.279	48.858	0					40	19	3	0	0	0	0.032194	1	9844	9844		49.554	13.048	1	284910			10187	253	6664	6716	14226	14226					0.04725456443236453
LAVSENHIL	9	Unmodified	_LAVSENHIL_					0	0	0		CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant;nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant	CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2799072265625	2	498.279649	994.544745	0.36625	0.00018249	-0.03036	-1.5128E-05	0.33589	0.00016736	498.27973063096914	48.377	0.39043	48.457	48.274	48.665	0.080029					37	12	4	0	0	0	0.11816	1	9677	9677		28.495	4.7047	1	186840			10188	253	6664	6716	14227	14227					0.04725456443236453
LAWCVQKC	8	Unmodified	_LAWCVQKC_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.7325134277344	2	475.732966	949.451379	0.040426	1.9232E-05	-0.4712	-0.00022417	-0.43078	-0.00020493	475.73262954453565	37.793	0.94386	37.877	37.541	38.485	0.084476					63	33	3	0	0	0	0.53858	1	6486	6486		2.3027	0	1	103180	+		10189	8093	6665	6717	14228	14228					-0.025368825352074964
LAWFFTSAPF	10	Unmodified	_LAWFFTSAPF_					0	0	0			REV__ENST00000575919.1_1_17:4936703-4937901:-|nuORF	REV__ENST00000575919.1_1_17:4936703-4937901:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.7990112304688	2	593.800217	1185.58588	0.36539	0.00021697	0.011493	6.8246E-06	0.37689	0.0002238	593.7997330374178	71.248	0.30821	71.306	71.183	71.492	0.058578					19	10	2	0	0	0	0.31794	1	16645	16645		3.5965	0	1	142950	+		10190	9119	6666	6718	14229	14229					0.0005121748267811199
LAYHLAVVL	9	Unmodified	_LAYHLAVVL_					0	0	0		ENSG00000185803|ENST00000643944|SLC52A2;ENST00000575919.1_1_17:4936703-4937901:-|nuORF;ENST00000573674.1_1_17:4936254-4937771:-|nuORF;ENSG00000132517|ENST00000254853|SLC52A1	ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.8055419921875	2	499.805303	997.596052	0.6352	0.00031747	-0.17055	-8.5244E-05	0.46464	0.00023223	499.8051147580572	67.111	0.85432	67.111	66.871	67.725	0					78	31	4	0	0	0	0.038949	1	15542	15542		45.75	24.879	1	1397100			10191	5046	6667	6719	14230	14230					0.09715825207922535
LAYHLAVVL	9	Unmodified	_LAYHLAVVL_					0	0	0		ENSG00000185803|ENST00000643944|SLC52A2;ENST00000575919.1_1_17:4936703-4937901:-|nuORF;ENST00000573674.1_1_17:4936254-4937771:-|nuORF;ENSG00000132517|ENST00000254853|SLC52A1	ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.8055114746094	2	499.805303	997.596052	0.74681	0.00037326	-0.29947	-0.00014968	0.44734	0.00022359	499.80502068480826	67.082	0.94215	67.147	66.871	67.813	0.065071					73	32	4	0	0	0	0.038949	1	15369	15369		45.75	27.615	1	948240			10192	5046	6667	6719	14231	14231					0.09715825207922535
LCAFAYPNQKD	11	Unmodified	_LCAFAYPNQKD_					0	0	0		ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.1640625	2	635.300255	1268.58596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.017	1	86.043	85.543	86.543	0.025169								0	0	0	0.33503	1	21137	21137		2.4985	0	1				10193	2155	6668	6720	14232	14232					-0.03759150579639936
LCARVPFW	8	Unmodified	_LCARVPFW_					0	0	0		ENST00000441399.2_1_X:131352808-131563850:+|nuORF	ENST00000441399.2_1_X:131352808-131563850:+|nuORF	ENST00000441399.2_1_X:131352808-131563850:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2617492675781	2	496.262748	990.510943	0.063185	3.1357E-05	-1.4438	-0.0007165	-1.3806	-0.00068514	496.26201807154973	24.746	0.17464	24.842	24.776	24.951	0.096073					21	16	2	0	0	0	0.54081	1	2649	2649		0.79363	0.10326	1	19566			10194	6523	6669	6721	14233	14233					0.015307564704812648
LCCRGNIVPGF	11	Unmodified	_LCCRGNIVPGF_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7964477539062	2	589.794086	1177.57362	0.85601	0.00050487	2.145	0.0012651	3.001	0.00177	590.2979955766925	84.832	0.14313	84.832	84.786	84.929	0					8	5	2	0	0	0	0.39378	1	20937	20937		5.7319	0	1	109420	+		10195	9824	6670	6722	14234	14234					-0.00806465523623956
LCCRGNIVPGF	11	Unmodified	_LCCRGNIVPGF_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.34326171875	2	589.794086	1177.57362	0.67977	0.00040093	-3.8769	-0.0022866	-3.1971	-0.0018856	589.7899375775302	85.29	0.60829	85.29	85.042	85.65	0					73	24	5	0	0	0	0.31042	1	21133	21133		6.2058	0.47393	1	768380	+		10196	9824	6670	6722	14235	14235					-0.00806465523623956
LCDPSLPTPRV	11	Unmodified	_LCDPSLPTPRV_					0	0	0		ENST00000487163.5_1_1:161131815-161133927:+|nuORF	ENST00000487163.5_1_1:161131815-161133927:+|nuORF	ENST00000487163.5_1_1:161131815-161133927:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.318359375	2	599.318448	1196.62234	0.046831	2.8067E-05	-0.15116	-9.0592E-05	-0.10433	-6.2525E-05	599.3184924374153	46.236	0.38087	46.236	46.039	46.42	0					19	12	2	0	0	0	0.40693	1	9164	9164		2.7352	0	1	35985			10197	6788	6671	6723	14236	14236					0.03189726317100394
LCEAPLPPM	9	Unmodified	_LCEAPLPPM_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7405090332031	2	485.740457	969.46636	-0.069348	-3.3685E-05	0.75492	0.00036669	0.68557	0.00033301	485.7406068263491	35.578	0.36257	35.657	35.513	35.876	0.078831					23	12	3	0	0	0	0.33356	1	5823	5823		2.3027	0.4585	1	40171	+		10198	9579	6672	6724	14237	14237					-0.019594354578657658
LCEFAQEQEV	10	Unmodified	_LCEFAQEQEV_					0	0	0		ENSG00000110925|ENST00000228515|CSRNP2	ENSG00000110925|ENST00000228515|CSRNP2	ENSG00000110925|ENST00000228515|CSRNP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.79541015625	2	598.268621	1194.52269	0.58767	0.00035159	-2.858	-0.0017098	-2.2703	-0.0013582	598.2662434512941	85.253	0.56569	85.276	85.063	85.628	0.023125					50	23	3	0	0	0	0.18233	1	20881	20881		53.833	3.8998	1	458090			10199	1686	6673	6725	14238	14238					-0.06679136087495863
LCEFGFHGI	9	Unmodified	_LCEFGFHGI_					0	0	0			REV__ENSG00000154997|ENST00000388975|SEPTIN14	REV__ENSG00000154997|ENST00000388975|SEPTIN14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7435607910156	2	511.741845	1021.46914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.384	1	87.384	86.884	87.884	0								0	0	0	0.27427	1	21713	21713		4.3292	1.0479	1		+		10200	9722	6674	6726	14239	14239					-0.040738440086897754
LCFACGCWFGM	11	Unmodified	_LCFACGCWFGM_					0	0	0			REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|84	REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|84	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.2360229492188	2	619.236701	1236.45885	-0.71291	-0.00044146	-1.2133	-0.00075134	-1.9263	-0.0011928	619.2364056226037	40.558	1.1726	40.558	40.151	41.324	0					109	41	4	0	0	0	0.41242	1	7486	7486		1.4819	0.15237	1	203220	+		10201	7769	6675	6727	14240	14240					-0.14992234321471187
LCFACGCWFGM	11	Unmodified	_LCFACGCWFGM_					0	0	0			REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|84	REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|84	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.236083984375	2	619.236701	1236.45885	-0.47234	-0.00029249	-1.3239	-0.0008198	-1.7962	-0.0011123	619.236286379876	40.394	1.0398	40.483	40.113	41.153	0.089645					113	40	4	0	0	0	0.40315	2	7260	7260;7355		3.5965	0.31518	1	179140	+		10202	7769	6675	6727	14241;14242	14241					-0.14992234321471187
LCFFIGNMNPV	11	Unmodified	_LCFFIGNMNPV_					0	0	0			REV__ENST00000216373.9_1_14:50626604-50626646:-|nuORF	REV__ENST00000216373.9_1_14:50626604-50626646:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.7490234375	2	627.804119	1253.59369	0.26054	0.00016357	-3.566	-0.0022387	-3.3054	-0.0020752	627.8007286736276	55.755	0.12152	55.755	55.692	55.813	0					5	3	2	0	0	0	0.3108	1	12066	12066		2.9952	0.26005	1	38665	+		10203	11174	6676	6728	14243	14243					-0.022967145836673808
LCFFITLFGSY	11	Unmodified	_LCFFITLFGSY_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.56402587890625	3	437.554504	1309.64168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.782	1	48.782	48.282	49.282	0								0	0	0	0.33466	1	9943	9943		2.6312	0.72486	1				10204	3890	6677	6729	14244	14244					-0.0007531739195201226
LCFRHEVL	8	Unmodified	_LCFRHEVL_					0	0	0		chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|26	chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|26	chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.28424072265625	2	508.770937	1015.52732	0.22787	0.00011593	0.22163	0.00011276	0.44949	0.00022869	508.7697502241501	79.142	0.43	79.168	78.958	79.388	0.026436					26	14	3	0	0	0	0.53026	1	19014	19014		7.9102	0	1	80520			10205	140	6678	6730	14245	14245					0.02017837636594777
LCFWWHSS	8	Unmodified	_LCFWWHSS_					0	0	0			REV__ENST00000307450.10_1_10:99375749-99375869:-|nuORF	REV__ENST00000307450.10_1_10:99375749-99375869:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2346801757812	2	533.234187	1064.45382	0.45592	0.00024311	0.41785	0.00022281	0.87377	0.00046593	533.2343300228223	94.321	0.60121	94.321	94.084	94.685	0					86	27	5	0	0	0	0.54081	1	23849	23849		0.79363	0.10326	1	404560	+		10206	11363	6679	6731	14246	14246					-0.07582710805900206
LCGLMCVLMRA	11	Unmodified	_LCGLMCVLMRA_					0	0	0			REV__ENST00000250405.9_2_14:23778607-23778970:+|nuORF	REV__ENST00000250405.9_2_14:23778607-23778970:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.505615234375	3	403.870676	1208.5902	-0.196	-7.9158E-05	-1.2184	-0.00049207	-1.4144	-0.00057122	403.8700348995609	33.503	0.14995	33.578	33.515	33.665	0.074322					6	5	2	0	0	0	0.31092	1	5210	5210		0.50596	0	1	10650	+		10207	11209	6680	6732	14247	14247					-0.005754239535463057
LCHALLGTRQ	10	Unmodified	_LCHALLGTRQ_					0	0	0			REV__ENST00000319977.8_1_17:42219400-42225280:+|nuORF	REV__ENST00000319977.8_1_17:42219400-42225280:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3079833984375	2	556.305675	1110.5968	0.56259	0.00031297	3.8845	0.002161	4.4471	0.0024739	556.3078463635794	82.684	0.74026	82.706	82.424	83.164	0.021744					37	25	2	0	0	0	0.31496	1	20078	20078		13.906	0.86358	1	165600	+		10208	11391	6681	6733	14248	14248					0.04592296585337863
LCHAPWCLEF	10	Unmodified	_LCHAPWCLEF_					0	0	0			REV__ENST00000540847.6_1_18:13088862-13124766:+|nuORF	REV__ENST00000540847.6_1_18:13088862-13124766:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.774658203125	2	609.775362	1217.53617	0.56064	0.00034187	-0.74605	-0.00045492	-0.18541	-0.00011306	609.774551913685	63.966	0.72085	64.037	63.76	64.48	0.071018					53	24	3	0	0	0	0.40987	1	14387	14387		10.824	0.75	1	409620	+		10209	8435	6682	6734	14249	14249					-0.06389556789281414
LCHAPWCLEF	10	Unmodified	_LCHAPWCLEF_					0	0	0			REV__ENST00000540847.6_1_18:13088862-13124766:+|nuORF	REV__ENST00000540847.6_1_18:13088862-13124766:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	609.775362	1217.53617	0.55426	0.00033798	-1.0962	-0.00066845	-0.54196	-0.00033048	609.7745013466462	63.992	0.86891	63.992	63.819	64.688	0	-0.022211	-0.00017391	NaN	10.824	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387040	+		10210	8435	6682	6734							-0.06389556789281414
LCHAPWCLEF	10	Unmodified	_LCHAPWCLEF_					0	0	0			REV__ENST00000540847.6_1_18:13088862-13124766:+|nuORF	REV__ENST00000540847.6_1_18:13088862-13124766:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	609.775362	1217.53617	0.56064	0.00034187	-0.74605	-0.00045492	-0.18541	-0.00011306	609.774551913685	63.966	0.72085	64.037	63.76	64.48	0.071018	0.022211	0.00025314	NaN	10.824	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409620	+		10211	8435	6682	6734							-0.06389556789281414
LCIFMFVLF	9	Unmodified	_LCIFMFVLF_					0	0	0		ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8098754882812	2	566.800317	1131.58608	0.21037	0.00011924	-2.8895	-0.0016378	-2.6792	-0.0015185	566.7986757248317	102.51	0.36973	102.51	102.36	102.73	0					30	24	2	0	0	0	0.18003	1	26368	26368		20.871	3.9289	1	56708			10212	1757	6683	6735	14250	14250					0.02555177886688398
LCIFMFVLF	9	Unmodified	_LCIFMFVLF_					0	0	0		ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8092041015625	2	566.800317	1131.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.67	1	101.67	101.17	102.17	0								0	0	0	0.18155	1	26054	26054		20.871	6.0329	1				10213	1757	6683	6735	14251	14251					0.02555177886688398
LCIFMFVLF	9	Unmodified	_LCIFMFVLF_					0	0	0		ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8093872070312	2	566.800317	1131.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.83	1	101.83	101.33	102.33	0								0	0	0	0.22377	1	26104	26104		14.582	3.7578	1				10214	1757	6683	6735	14252	14252					0.02555177886688398
LCIFMFVLF	9	Unmodified	_LCIFMFVLF_					0	0	0		ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8089599609375	2	566.800317	1131.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.12	1	103.12	102.62	103.62	0								0	0	0	0.22377	1	26495	26495		14.582	5.2343	1				10215	1757	6683	6735	14253	14253					0.02555177886688398
LCIFMFVLF	9	Unmodified	_LCIFMFVLF_					0	0	0		ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8092651367188	2	566.800317	1131.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.23	1	103.23	102.73	103.73	0								0	0	0	0.18155	1	26527	26527		20.871	10.797	1				10216	1757	6683	6735	14254	14254					0.02555177886688398
LCIFMFVLF	9	Unmodified	_LCIFMFVLF_					0	0	0		ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8086547851562	2	566.800317	1131.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.63	1	101.67	101.17	102.17	0.042656								0	0	0	0.18155	1	25887	25887		20.871	3.9289	1				10217	1757	6683	6735	14255	14255					0.02555177886688398
LCIGGNEC	8	Unmodified	_LCIGGNEC_					0	0	0			REV__nc|ENSG00000164176|O43854-2|EDIL3	REV__nc|ENSG00000164176|O43854-2|EDIL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1879577636719	2	404.670031	807.32551	0.26073	0.00010551	-0.15502	-6.2731E-05	0.10571	4.2777E-05	404.6715098198338	78.293	0.17402	78.323	78.2	78.374	0.030159					6	5	2	0	0	0	0.3576	1	18777	18777		5.2307	0	1	14180	+		10218	9985	6684	6736	14256	14256					-0.08586014111290297
LCKEKVAS	8	Unmodified	_LCKEKVAS_					0	0	0		nc|ENSG00000168032|O75355-2|ENTPD3;ENSG00000168032|ENST00000301825|ENTPD3	nc|ENSG00000168032|O75355-2|ENTPD3	nc|ENSG00000168032|O75355-2|ENTPD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.25262451171875	2	439.244221	876.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.875	1	85.875	85.375	86.375	0								0	0	0	0.38822	1	21251	21251		4.756	1.8668	1				10219	4255	6685	6737	14257	14257					0.030710401340684257
LCKKNGFKVY	10	Unmodified	_LCKKNGFKVY_					0	0	0		ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3345336914062	2	600.333901	1198.65325	0.35653	0.00021404	0.41011	0.0002462	0.76664	0.00046024	600.3340481319144	88.642	1.3839	88.674	88.463	89.846	0.032257					95	55	2	0	0	0	0.45443	1	22074	22074		3.9444	1.8846	1	607940			10220	4865	6686	6738	14258	14258					0.06186924422013362
LCKKSLSKTS	10	Unmodified	_LCKKSLSKTS_					0	0	0			REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF	REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.815673828125	2	547.815541	1093.61653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.83	1	119.83	119.33	120.33	0								0	0	0	0.34018	1	30155	30155		0	0	1		+		10221	9662	6687	6739	14259	14259					0.07346627805463868
LCKVLGVLF	9	Unmodified	_LCKVLGVLF_					0	0	0		nc|ENSG00000011021|P51797-4|CLCN6;nc|ENSG00000011021|P51797-2|CLCN6;nc|ENSG00000011021|P51797-3|CLCN6;nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-4|CLCN6	nc|ENSG00000011021|P51797-4|CLCN6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.3038330078125	2	496.304081	990.59361	0.50531	0.00025079	-0.42316	-0.00021002	0.082142	4.0768E-05	496.30379405199284	78.744	2.0165	78.744	78.153	80.169	0					103	69	2	0	0	0	0.33356	1	19139	19139		2.3027	1.5091	1	494570			10222	420	6688	6740	14260	14260					0.09793653478652686
LCLAINPIF	9	Unmodified	_LCLAINPIF_					0	0	0			REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|111|3|anti-sense	REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|111|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2763366699219	2	502.285889	1002.55722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.988	1	46.073	45.573	46.573	0.085617								0	0	0	0.2699	1	8973	8973		5.2307	0.90143	1		+		10223	12699	6689	6741	14261	14261					0.056047765819016604
LCLAMECSS	9	Unmodified	_LCLAMECSS_					0	0	0		ENST00000304056.8_1_7:32909542-32909605:-|nuORF	ENST00000304056.8_1_7:32909542-32909605:-|nuORF	ENST00000304056.8_1_7:32909542-32909605:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.6980285644531	2	478.697931	955.38131	-0.069069	-3.3063E-05	-0.21987	-0.00010525	-0.28894	-0.00013831	478.69782507128997	50.277	0.38468	50.277	50.05	50.435	0					19	13	2	0	0	0	0.29105	1	10385	10385		7.9102	0.62092	1	76305			10224	5983	6690	6742	14262	14262					-0.0981654898597526
LCLAMECSS	9	Unmodified	_LCLAMECSS_					0	0	0		ENST00000304056.8_1_7:32909542-32909605:-|nuORF	ENST00000304056.8_1_7:32909542-32909605:-|nuORF	ENST00000304056.8_1_7:32909542-32909605:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	478.697931	955.38131	-0.0046166	-2.2099E-06	-0.45185	-0.0002163	-0.45646	-0.00021851	478.697496322758	50.109	0.43562	50.182	49.979	50.414	0.07312	-0.047554	-7.5962E-05	NaN	7.9102	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76423			10225	5983	6690	6742							-0.0981654898597526
LCLENRYLL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LENRYLL_	LC(1)LENRYLL		LC(44)LENRYLL		0	1	0		tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3197021484375	2	597.320991	1192.62743	0.19646	0.00011735	-1.3573	-0.00081075	-1.1609	-0.0006934	597.320078208764	62.27	0.6221	62.343	62.208	62.83	0.073421					49	21	3	0	0	0	0.045114	1	13981	13981		44.407	10.305	1	469960			10226	13533	6691	6743	14263	14263	22				0.03882030179738649
LCLGFFFW	8	Unmodified	_LCLGFFFW_					0	0	0		nc|ENSG00000124256|Q9H171-5|ZBP1;ENST00000480037.1_1_20:56191111-56195351:-|nuORF;ENST00000461547.5_1_20:56191111-56191654:-|nuORF	nc|ENSG00000124256|Q9H171-5|ZBP1	nc|ENSG00000124256|Q9H171-5|ZBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.70947265625	2	516.754224	1031.4939	-0.095591	-4.9397E-05	1.7021	0.00087955	1.6065	0.00083016	516.7550628095579	27.461	0.48406	27.547	27.518	28.002	0.086699					50	35	2	0	0	0	0.3576	1	3452	3452		2.8892	0	1	59543			10227	6611	6692	6744	14264	14264					-0.020591641353348678
LCLPGRMR	8	Unmodified	_LCLPGRMR_					0	0	0		CARD6|p.H139Sfs*49|1|0.18|ENSG00000132357|chr5:40843283-40843304|CACTTGGATTTGGAAACCTCTG/-|frameshift_variant	CARD6|p.H139Sfs*49|1|0.18|ENSG00000132357|chr5:40843283-40843304|CACTTGGATTTGGAAACCTCTG/-|frameshift_variant	CARD6|p.H139Sfs*49|1|0.18|ENSG00000132357|chr5:40843283-40843304|CACTTGGATTTGGAAACCTCTG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7269592285156	2	473.259682	944.504811	-0.37581	-0.00017786	-0.88732	-0.00041993	-1.2631	-0.00059779	473.2595539755287	30.073	0.39021	30.073	29.896	30.286	0					20	16	2	0	0	0	0.3576	1	4363	4363		0.79363	0	1	14891			10228	104	6693	6745	14265	14265					0.030339149673181964
LCLPGRMR	8	Unmodified	_LCLPGRMR_					0	0	0		CARD6|p.H139Sfs*49|1|0.18|ENSG00000132357|chr5:40843283-40843304|CACTTGGATTTGGAAACCTCTG/-|frameshift_variant	CARD6|p.H139Sfs*49|1|0.18|ENSG00000132357|chr5:40843283-40843304|CACTTGGATTTGGAAACCTCTG/-|frameshift_variant	CARD6|p.H139Sfs*49|1|0.18|ENSG00000132357|chr5:40843283-40843304|CACTTGGATTTGGAAACCTCTG/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	473.259682	944.504811	-0.38045	-0.00018005	-0.57832	-0.00027369	-0.95877	-0.00045375	473.25946198206117	30.003	0.25632	30.078	29.987	30.243	0.075405	0.0024645	7.7822E-05	NaN	0.79363	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18983			10229	104	6693	6745							0.030339149673181964
LCLTEKRQDA	10	Unmodified	_LCLTEKRQDA_					0	0	0			REV__ENST00000497760.1_1_2:174940156-174943911:-|nuORF	REV__ENST00000497760.1_1_2:174940156-174943911:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7650146484375	2	588.805705	1175.59686	0.74227	0.00043706	-0.14175	-8.3462E-05	0.60053	0.00035359	588.8055391983775	82.224	0.81149	82.224	82.036	82.848	0					44	28	2	0	0	0	0.23501	1	20159	20159		45.7	11.298	1	457840	+		10230	12191	6694	6746	14266	14266					0.016082517947097585
LCLTEKRQDA	10	Unmodified	_LCLTEKRQDA_					0	0	0			REV__ENST00000497760.1_1_2:174940156-174943911:-|nuORF	REV__ENST00000497760.1_1_2:174940156-174943911:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7649536132812	2	588.805705	1175.59686	0.55733	0.00032816	0.07945	4.678E-05	0.63678	0.00037494	588.8057503403464	82.232	0.54511	82.254	82.044	82.59	0.021866					36	18	2	0	0	0	0.097421	1	20009	20009		66.457	32.055	1	380070	+		10231	12191	6694	6746	14267	14267					0.016082517947097585
LCLVGFIGVSI	11	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LVGFIGVSI_	LC(1)LVGFIGVSI		LC(44)LVGFIGVSI		0	1	0			REV__SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant	REV__SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3348388671875	2	589.33611	1176.65767	0.39034	0.00023004	-1.7143	-0.0010103	-1.324	-0.00078027	589.3342632053756	58.476	1.1964	58.547	58.322	59.518	0.070477					89	44	4	0	0	0	0.1121	1	12735	12735		43.858	11.073	1	934190	+		10232	9738	6695	6747	14268	14268	17				0.0764038884490219
LCRFWILA	8	Unmodified	_LCRFWILA_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|197|1|anti-sense;chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|22	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|197|1|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|197|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2867126464844	2	511.286223	1020.55789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.17	1	116.18	115.68	116.68	0.013062								0	0	0	0.38822	1	29493	29493		0.79363	0	1				10233	162	6696	6748	14269	14269					0.048436160216397184
LCSDHSLASG	10	Unmodified	_LCSDHSLASG_					0	0	0		ENST00000594846.1_1_19:51453353-51456194:-|nuORF;ENST00000391809.6_1_19:51453353-51456217:-|nuORF	ENST00000594846.1_1_19:51453353-51456194:-|nuORF	ENST00000594846.1_1_19:51453353-51456194:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.20782470703125	2	495.221474	988.428395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.678	1	37.678	37.178	38.178	0								0	0	0	0.33892	1	6593	6593		1.4819	0.15237	1				10234	6312	6697	6749	14270	14270					-0.06628230118963074
LCSNWAHFFD	10	Unmodified	_LCSNWAHFFD_					0	0	0			REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL	REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.2979736328125	2	620.266216	1238.51788	-0.1781	-0.00011047	-0.66205	-0.00041065	-0.84015	-0.00052112	620.2655379367712	73.981	0.78084	73.981	73.798	74.579	0					34	28	2	0	0	0	0.31689	1	17664	17664		8.1555	1.9497	1	214260	+		10235	9687	6698	6750	14271	14271					-0.09183975439600545
LCSSPLVSLF	10	Unmodified	_LCSSPLVSLF_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2846069335938	2	533.286085	1064.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.85	1	93.888	93.388	94.388	0.038086								0	0	0	0.32828	1	23516	23516		13.906	0.86358	1		+		10236	11380	6699	6751	14272	14272					0.02792151511107477
LCTRNRFGT	9	Unmodified	_LCTRNRFGT_					0	0	0			REV__ENST00000394936.7_1_10:73590929-73591613:-|nuORF	REV__ENST00000394936.7_1_10:73590929-73591613:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2943725585938	2	534.274375	1066.5342	0.53632	0.00028654	-0.2303	-0.00012304	0.30602	0.0001635	534.2744196381462	82.159	0.32756	82.181	81.992	82.32	0.021866					19	11	2	0	0	0	0.25174	1	19985	19985		7.2892	0.56607	1	42917	+		10237	11716	6700	6752	14273	14273					0.0035915051716983726
LCVNGHFF	8	Unmodified	_LCVNGHFF_					0	0	0		ENST00000465904.1_1_6:109767733-109768483:-|nuORF;ENST00000456101.6_1_6:109766698-109772967:-|nuORF;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1	ENST00000465904.1_1_6:109767733-109768483:-|nuORF	ENST00000465904.1_1_6:109767733-109768483:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7237243652344	2	468.723455	935.432358	0.59787	0.00028024	0.13734	6.4374E-05	0.73521	0.00034461	468.72300897558875	84.967	0.35783	84.967	84.804	85.162	0					18	12	2	0	0	0	0.53771	1	20999	20999		2.8892	0	1	85598			10238	2737	6701	6753	14274	14274					-0.03794095834609834
LCVNGHFF	8	Unmodified	_LCVNGHFF_					0	0	0		ENST00000465904.1_1_6:109767733-109768483:-|nuORF;ENST00000456101.6_1_6:109766698-109772967:-|nuORF;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1	ENST00000465904.1_1_6:109767733-109768483:-|nuORF	ENST00000465904.1_1_6:109767733-109768483:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7232360839844	2	468.723455	935.432358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.661	1	86.661	86.161	87.161	0								0	0	0	0.38822	1	21491	21491		2.8892	0	1				10239	2737	6701	6753	14275	14275					-0.03794095834609834
LCWCLVGAF	9	Unmodified	_LCWCLVGAF_					0	0	0		nc|ENSG00000063127|Q9GZN6-2|SLC6A16;ENSG00000063127|ENST00000335875|SLC6A16	nc|ENSG00000063127|Q9GZN6-2|SLC6A16	nc|ENSG00000063127|Q9GZN6-2|SLC6A16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2335510253906	2	506.243166	1010.47178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.957	1	60.029	59.529	60.529	0.072338								0	0	0	0.24995	1	13208	13208		9.3474	1.4373	1				10240	658	6702	6754	14276	14276					-0.0330371187540095
LCWCSLYF	8	2 Carbamidomethyl (C)	_LC(Carbamidomethyl (C))WC(Carbamidomethyl (C))SLYF_	LC(1)WC(1)SLYF		LC(40)WC(40)SLYF		0	2	0		ENST00000417811.2_3_7:32763128-32763203:-|nuORF	ENST00000417811.2_3_7:32763128-32763203:-|nuORF	ENST00000417811.2_3_7:32763128-32763203:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7498779296875	2	574.748813	1147.48307	0.67952	0.00039055	1.0882	0.00062542	1.7677	0.001016	574.7493706651188	80.465	0.60289	80.489	80.248	80.851	0.023613					50	21	3	0	0	0	0.22517	1	19449	19449		40.449	6.0469	1	725200			10241	6436	6703	6755	14277	14277	11;12				-0.08476934571922357
LCWQRKKY	8	Unmodified	_LCWQRKKY_					0	0	0		ENST00000531925.5_1_19:1806419-1810672:-|nuORF;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3	ENST00000531925.5_1_19:1806419-1810672:-|nuORF	ENST00000531925.5_1_19:1806419-1810672:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8078002929688	2	562.805311	1123.59607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.227	1	14.227	13.727	14.727	0								0	0	0	0.38822	1	337	337		0.79363	0	1				10242	2461	6704	6756	14278	14278					0.039215019362927706
LCYALSFITY	10	Unmodified	_LCYALSFITY_					0	0	0		ENSG00000196131|ENST00000341702|VN1R2	ENSG00000196131|ENST00000341702|VN1R2	ENSG00000196131|ENST00000341702|VN1R2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7677612304688	2	597.299193	1192.58383	0.10409	6.2174E-05	3.107	0.0018558	3.2111	0.001918	597.301154968516	38.895	0.29473	38.982	38.858	39.153	0.08688					14	10	2	0	0	0	0.31838	1	6798	6798		1.4819	0	1	31356			10243	5205	6705	6757	14279	14279					-0.004755793174126666
LCYARIKSFV	10	Unmodified	_LCYARIKSFV_					0	0	0			REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3345947265625	2	600.333901	1198.65325	0.47691	0.00028631	0.22144	0.00013294	0.69835	0.00041924	600.333882791866	88.093	1.9448	88.093	87.402	89.347	0					202	75	3	0	0	0	0.45627	2	21818	21818;21865		3.5965	1.098	1	484250	+		10244	12416	6706	6758	14280;14281	14280					0.06186924421990625
LCYARIKSFV	10	Unmodified	_LCYARIKSFV_					0	0	0			REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3341064453125	2	600.333901	1198.65325	0.34927	0.00020968	0.15978	9.5921E-05	0.50905	0.0003056	600.3338160642502	88.125	1.9043	88.155	87.237	89.141	0.030037					139	74	3	0	0	0	0.45627	2	21601	21601;21645		3.5965	1.5367	1	928050	+		10245	12416	6706	6758	14282;14283	14282					0.06186924421990625
LCYWCFAHKC	10	Unmodified	_LCYWCFAHKC_					0	0	0			REV__ENSG00000151692|ENST00000320892|RNF144A	REV__ENSG00000151692|ENST00000320892|RNF144A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.2705078125	2	637.26939	1272.52423	0.18093	0.0001153	1.1512	0.00073363	1.3321	0.00084894	637.2701622955449	86.638	0.37534	86.666	86.484	86.859	0.027573					29	16	2	0	0	0	0.46746	1	21370	21370		1.4819	0	1	510290	+		10246	9652	6707	6759	14284	14284					-0.10113496804092392
LDAELARTAA	10	Unmodified	_LDAELARTAA_					0	0	0		ENST00000398869.2_1_22:50151619-50152259:-|nuORF	ENST00000398869.2_1_22:50151619-50152259:-|nuORF	ENST00000398869.2_1_22:50151619-50152259:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.76171875	2	515.780013	1029.54547	-0.32743	-0.00016888	-1.2357	-0.00063732	-1.5631	-0.00080621	515.7792414019266	42.563	0.14526	42.563	42.454	42.599	0					6	4	2	0	0	0	0.31731	1	8041	8041		6.2058	0	1	19801			10247	6355	6708	6760	14285	14285					0.031882510922514484
LDAEVLLDSD	10	Unmodified	_LDAEVLLDSD_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2672119140625	2	545.269144	1088.52373	0.021759	1.1865E-05	-1.8648	-0.0010168	-1.8431	-0.001005	545.26819275672	90.488	0.46614	90.522	90.216	90.682	0.034065					25	18	2	0	0	0	0.38912	1	22462	22462		13.042	0	1	56585			10248	2785	6709	6761	14286	14286					-0.016985984469329196
LDAEVLLDSD	10	Unmodified	_LDAEVLLDSD_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	545.269144	1088.52373	0.3027	0.00016505	0.72794	0.00039692	1.0306	0.00056197	545.2699206211628	90.613	0.13426	90.613	90.549	90.683	0	0.045526	0.0020129	NaN	13.042	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56935			10249	2785	6709	6761							-0.016985984469329196
LDAKLVDIKH	10	Unmodified	_LDAKLVDIKH_					0	0	0			REV__ENSG00000053328|ENST00000338882|METTL24	REV__ENSG00000053328|ENST00000338882|METTL24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.3427734375	2	576.342781	1150.67101	-0.050146	-2.8901E-05	-1.0489	-0.00060451	-1.099	-0.00063341	576.341871207791	109.54	0.14156	109.54	109.46	109.6	0					14	10	2	0	0	0	0.46899	1	28190	28190		1.1933	0.39971	1	228770	+		10250	8057	6710	6762	14287	14287					0.10169962948521061
LDALPLDLL	9	Unmodified	_LDALPLDLL_					0	0	0		MSLN|p.Y234Tfs*78|2|0.35|ENSG00000102854|chr16:765293-765293|C/-|frameshift_variant;nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	MSLN|p.Y234Tfs*78|2|0.35|ENSG00000102854|chr16:765293-765293|C/-|frameshift_variant	MSLN|p.Y234Tfs*78|2|0.35|ENSG00000102854|chr16:765293-765293|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.79473876953125	2	491.794601	981.574648	0.14239	7.0026E-05	-1.002	-0.00049276	-0.85957	-0.00042273	491.7939879346663	89.682	0.50042	89.716	89.486	89.987	0.034065					31	18	2	0	0	0	0.074645	1	22264	22264		37.974	12.575	1	194880			10251	1332	6711	6763	14288	14288					0.08312395388577443
LDDIFDLH	8	Unmodified	_LDDIFDLH_					0	0	0			REV__ENST00000559198.1_1_15:49303877-49305024:-|nuORF	REV__ENST00000559198.1_1_15:49303877-49305024:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2341003417969	2	494.242732	986.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.027	1	72.083	71.583	72.583	0.055939								0	0	0	0.38822	1	16870	16870		8.5933	0.68312	1		+		10252	9316	6712	6764	14289	14289					-0.022865117191145146
LDDRKRYE	8	Unmodified	_LDDRKRYE_					0	0	0			REV__ENST00000514089.5_1_17:47007839-47013524:-|nuORF	REV__ENST00000514089.5_1_17:47007839-47013524:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7830200195312	2	547.783087	1093.55162	-0.14931	-8.1791E-05	-0.25073	-0.00013735	-0.40005	-0.00021914	547.7829689452815	25.716	0.44336	25.716	25.492	25.936	0					57	33	2	0	0	0	0.54097	1	3089	3089		0.69038	0	1	17864	+		10253	12268	6713	6765	14290	14290					0.008587693238041538
LDDSKELQRF	10	Unmodified	_LDDSKELQRF_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.807861328125	2	625.822409	1249.63027	0.2203	0.00013787	-3.4206	-0.0021407	-3.2003	-0.0020028	625.8196621886905	60.69	0.52772	60.69	60.558	61.086	0					36	18	3	0	0	0	0.43214	1	13687	13687		8.1555	0.54658	1	325910			10254	4231	6714	6766	14291	14291					0.015435768382076276
LDEDEPEEPV	10	Unmodified	_LDEDEPEEPV_					0	0	0			REV__MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant	REV__MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2535400390625	2	586.253691	1170.49283	0.6538	0.00038329	-1.5373	-0.00090122	-0.88346	-0.00051793	586.7543956783858	61.489	0.88104	61.562	61.327	62.208	0.073421					93	47	3	0	0	0	0.3198	1	13645	13645		20.454	3.5113	1	1953900	+		10255	9823	6715	6767	14292	14292					-0.08559796551867294
LDEDRDIVGY	10	Unmodified	_LDEDRDIVGY_					0	0	0		tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.813232421875	2	597.785492	1193.55643	0.12014	7.1816E-05	0.27535	0.0001646	0.39548	0.00023641	597.785845148583	36.79	0.24833	36.872	36.739	36.987	0.081711					19	10	2	0	0	0	0.31811	1	6221	6221		2.9952	0	1	30609			10256	13726	6716	6768	14293	14293					-0.03260391324079137
LDEEKQLL	8	Unmodified	_LDEEKQLL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2718811035156	2	494.27149	986.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.566	1	72.566	72.066	73.066	0								0	0	0	0.3878	1	17188	17188		14.838	0	1				10257	2992	6717	6769	14294	14294					0.03462330486490828
LDELKCTR	8	Unmodified	_LDELKCTR_					0	0	0		ENST00000505136.1_1_5:137676955-137680597:+|nuORF;ENST00000511024.5_1_5:137676955-137677195:+|nuORF;ENSG00000120709|ENST00000239906|FAM53C	ENST00000505136.1_1_5:137676955-137680597:+|nuORF	ENST00000505136.1_1_5:137676955-137680597:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2563171386719	2	489.257859	976.501166	0.14009	6.8541E-05	-1.8276	-0.00089415	-1.6875	-0.00082561	489.2567965832539	38.774	0.95254	38.774	38.426	39.379	0					57	35	2	0	0	0	0.35759	1	6912	6912		11.64	0.81637	1	72656			10258	2132	6718	6770	14295	14295					0.01197523674443346
LDERAESF	8	Unmodified	_LDERAESF_					0	0	0			REV__ENSG00000152086|ENST00000312988|TUBA3E	REV__ENSG00000152086|ENST00000312988|TUBA3E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7160339355469	2	483.729989	965.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.335	1	70.395	69.895	70.895	0.060562								0	0	0	0.38822	1	16355	16355		5.2307	0.47466	1		+		10259	9664	6719	6771	14296	14296					-0.03867986241516519
LDEYYLVFW	9	Unmodified	_LDEYYLVFW_					0	0	0			REV__ENSG00000147155|ENST00000495186|EBP	REV__ENSG00000147155|ENST00000495186|EBP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3040771484375	2	624.30279	1246.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.738	1	98.738	98.238	99.238	0								0	0	0	0.28631	1	25162	25162		1.8442	0.36234	1		+		10260	9561	6720	6772	14297	14297					-0.022405234453344747
LDEYYLVFW	9	Unmodified	_LDEYYLVFW_					0	0	0			REV__ENSG00000147155|ENST00000495186|EBP	REV__ENSG00000147155|ENST00000495186|EBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.3020629882812	2	624.30279	1246.59103	0.43454	0.00027128	-0.7284	-0.00045474	-0.29386	-0.00018346	624.3024042531335	98.524	0.33817	98.566	98.386	98.724	0.041931					29	18	2	0	0	0	0.29105	1	24971	24971		7.9102	3.0131	1	149890	+		10261	9561	6720	6772	14298	14298					-0.022405234453344747
LDEYYLVFW	9	Unmodified	_LDEYYLVFW_					0	0	0			REV__ENSG00000147155|ENST00000495186|EBP	REV__ENSG00000147155|ENST00000495186|EBP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	624.30279	1246.59103	0.2744	0.00017131	0.18011	0.00011244	0.4545	0.00028375	624.3028259061854	98.584	0.31512	98.584	98.4	98.715	0	0.0092222	0.00056783	NaN	7.9102	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133790	+		10262	9561	6720	6772							-0.022405234453344747
LDEYYLVFW	9	Unmodified	_LDEYYLVFW_					0	0	0			REV__ENSG00000147155|ENST00000495186|EBP	REV__ENSG00000147155|ENST00000495186|EBP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	624.30279	1246.59103	0.43454	0.00027128	-0.7284	-0.00045474	-0.29386	-0.00018346	624.3024042531335	98.524	0.33817	98.566	98.386	98.724	0.041931	-0.0092222	-0.00056654	NaN	7.9102	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149890	+		10263	9561	6720	6772							-0.022405234453344747
LDFKDFQML	9	Unmodified	_LDFKDFQML_					0	0	0			REV__tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	REV__tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2870483398438	2	578.788992	1155.56343	0.46213	0.00026748	1.919	0.0011107	2.3811	0.0013782	579.2902263525889	94.085	0.73438	94.124	93.983	94.717	0.038086					47	32	2	0	0	0	0.27929	1	23570	23570		9.3831	1.2276	1	244860	+		10264	13213	6721	6773	14299	14299					-0.008127499772172087
LDFLGMIF	8	Unmodified	_LDFLGMIF_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2509765625	2	478.251514	954.488476	-0.45962	-0.00021981	-0.30903	-0.00014779	-0.76865	-0.00036761	478.2513288704572	25.478	0.36072	25.478	25.226	25.587	0					41	28	2	0	0	0	0.54081	1	2962	2962		0.79363	0	1	15634			10265	3838	6722	6774	14300	14300					0.009411122822029938
LDFLGMIF	8	Unmodified	_LDFLGMIF_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2513732910156	2	478.251514	954.488476	-0.32396	-0.00015494	-0.13042	-6.2375E-05	-0.45439	-0.00021731	478.2513475794756	25.233	0.33522	25.33	25.204	25.54	0.096073					39	29	2	0	0	0	0.54081	1	2785	2785		0.79363	0	1	13323			10266	3838	6722	6774	14301	14301					0.009411122822029938
LDFPMSEKNQ	10	Unmodified	_LDFPMSEKNQ_					0	0	0		FAM135B|p.L1174P|1|0.24|ENSG00000147724|chr8:138145978-138145978|A/G|missense_variant	FAM135B|p.L1174P|1|0.24|ENSG00000147724|chr8:138145978-138145978|A/G|missense_variant	FAM135B|p.L1174P|1|0.24|ENSG00000147724|chr8:138145978-138145978|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.52691650390625	3	403.525384	1207.55432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.039	1	76.039	75.539	76.539	0								0	0	0	0.3332	1	18253	18253		4.7159	0.87001	1				10267	7337	6723	6775	14302	14302					-0.041151433335471665
LDFPMSEKNQ	10	Unmodified	_LDFPMSEKNQ_					0	0	0		FAM135B|p.L1174P|1|0.24|ENSG00000147724|chr8:138145978-138145978|A/G|missense_variant	FAM135B|p.L1174P|1|0.24|ENSG00000147724|chr8:138145978-138145978|A/G|missense_variant	FAM135B|p.L1174P|1|0.24|ENSG00000147724|chr8:138145978-138145978|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.5268859863281	3	403.525384	1207.55432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.084	1	76.123	75.623	76.623	0.03923								0	0	0	0.3332	1	18109	18109		4.7159	0	1				10268	7337	6723	6775	14303	14303					-0.041151433335471665
LDFSSDNLDTL	11	Unmodified	_LDFSSDNLDTL_					0	0	0			REV__ENSG00000218823|ENST00000404991|PAPOLB	REV__ENSG00000218823|ENST00000404991|PAPOLB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3132934570312	2	620.290608	1238.56666	-0.20084	-0.00012458	1.5467	0.00095941	1.3459	0.00083483	620.29155872174	58.192	0.21786	58.192	57.999	58.217	0					13	7	2	0	0	0	0.31053	1	12778	12778		6.1918	1.8626	1	115100	+		10269	11019	6724	6776	14304	14304					-0.043078283895283676
LDFSSDNLDTL	11	Unmodified	_LDFSSDNLDTL_					0	0	0			REV__ENSG00000218823|ENST00000404991|PAPOLB	REV__ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	620.290608	1238.56666	-0.073112	-4.5351E-05	1.7419	0.0010805	1.6688	0.0010351	620.2919823268674	58.212	0.18188	58.282	58.184	58.366	0.070477	0.045224	0.00016203	NaN	6.1918	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65615	+		10270	11019	6724	6776							-0.043078283895283676
LDFWMLVY	8	Unmodified	_LDFWMLVY_					0	0	0		ENST00000358127.8_1_9:36840353-36840380:-|nuORF	ENST00000358127.8_1_9:36840353-36840380:-|nuORF	ENST00000358127.8_1_9:36840353-36840380:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.76953125	2	543.770071	1085.52559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.603	1	20.703	20.203	21.203	0.099499								0	0	0	0.38822	1	1547	1547		0.79363	0	1				10271	6138	6725	6777	14305	14305					-0.01375216172027649
LDGSHPAFLYG	11	Unmodified	_LDGSHPAFLYG_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7874145507812	2	588.787838	1175.56112	0.48261	0.00028415	-0.54329	-0.00031988	-0.060683	-3.5729E-05	588.7875861336489	39.02	0.38386	39.107	38.858	39.242	0.086884					22	14	2	0	0	0	0.40578	1	6845	6845		2.9952	1.3426	1	42181			10272	957	6726	6778	14306	14306					-0.019634623906767956
LDHEQVGSM	9	Unmodified	_LDHEQVGSM_					0	0	0		ENST00000376357.1_1_X:48935155-48937742:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45	ENST00000376357.1_1_X:48935155-48937742:-|nuORF	ENST00000376357.1_1_X:48935155-48937742:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2384338378906	2	508.229299	1014.44404	-0.22406	-0.00011387	-0.2473	-0.00012569	-0.47136	-0.00023956	508.2291580210991	26.58	0.50604	26.58	26.351	26.857	0					47	34	2	0	0	0	0.30005	1	3323	3323		6.7232	0.96273	1	33592			10273	5263	6727	6779	14307	14307					-0.0625994360191271
LDHFRCCLV	9	Unmodified	_LDHFRCCLV_					0	0	0		ENST00000254810.8_2_17:73773409-73773478:-|nuORF	ENST00000254810.8_2_17:73773409-73773478:-|nuORF	ENST00000254810.8_2_17:73773409-73773478:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2670288085938	2	553.267704	1104.52086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.724	1	28.802	28.302	29.302	0.078287								0	0	0	0.29233	1	3798	3798		0.6015	0.076735	1				10274	5845	6728	6780	14308	14308					-0.027224235864650836
LDHLSVLEV	9	Unmodified	_LDHLSVLEV_					0	0	0			REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF	REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7327880859375	2	512.787307	1023.56006	-0.032467	-1.6649E-05	-0.67168	-0.00034443	-0.70415	-0.00036108	513.2884494806216	43.252	0.21587	43.342	43.21	43.426	0.089767					9	6	2	0	0	0	0.2446	1	8172	8172		11.64	2.2929	1	20587	+		10275	12587	6729	6781	14309	14309					0.04922323240418791
LDHMLNLLD	9	Unmodified	_LDHMLNLLD_					0	0	0			REV__ENSG00000131558|ENST00000253861|EXOC4	REV__ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7560424804688	2	542.278792	1082.54303	0.84884	0.00046031	-1.5322	-0.00083086	-0.68333	-0.00037055	542.277970405966	80.752	0.36582	80.752	80.625	80.99	0					17	12	2	0	0	0	0.2446	1	19746	19746		11.64	0	1	76210	+		10276	9089	6730	6782	14310	14310					0.005060793629809268
LDIWTLCLD	9	Unmodified	_LDIWTLCLD_					0	0	0			REV__ENST00000529121.2_1_11:61101836-61101923:+|nuORF	REV__ENST00000529121.2_1_11:61101836-61101923:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7620849609375	2	546.275718	1090.53688	0.34556	0.00018877	-2.9267	-0.0015988	-2.5811	-0.00141	546.2743191954136	38.632	0.60548	38.719	38.435	39.04	0.08688					27	22	2	0	0	0	0.25174	1	6763	6763		7.2892	1.5574	1	22233	+		10277	12345	6731	6783	14311	14311					-0.004764388685771337
LDKNKHKQP	9	Unmodified	_LDKNKHKQP_					0	0	0			REV__ENSG00000148773|ENST00000368654|MKI67	REV__ENSG00000148773|ENST00000368654|MKI67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3152465820312	2	554.317097	1106.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.15	1	108.15	107.65	108.65	0								0	0	0	0.27427	1	27892	27892		4.3292	0	1		+		10278	9595	6732	6784	14312	14312					0.07059638974487825
LDKVHYTKRH	10	Unmodified	_LDKVHYTKRH_					0	0	0			REV__nc|ENSG00000198947|P11532-17|DMD	REV__nc|ENSG00000198947|P11532-17|DMD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.2309875488281	3	432.910561	1295.70985	0.060818	2.6329E-05	3.3953	0.0014698	3.4561	0.0014962	433.247943187733	48.581	0.18297	48.661	48.571	48.754	0.080029					6	5	2	0	0	0	0.31837	1	9750	9750		1.9064	0	1	17582	+		10279	12872	6733	6785	14313	14313					0.07382688302891438
LDLAQRNLY	9	Unmodified	_LDLAQRNLY_					0	0	0		ZNF699|p.K276Nfs*69|1|0.06|ENSG00000196110|chr19:9296558-9296579|TTTACATTCATAGTTTGTCTTT/-|frameshift_variant;ENSG00000196110|ENST00000591998|ZNF699	ZNF699|p.K276Nfs*69|1|0.06|ENSG00000196110|chr19:9296558-9296579|TTTACATTCATAGTTTGTCTTT/-|frameshift_variant	ZNF699|p.K276Nfs*69|1|0.06|ENSG00000196110|chr19:9296558-9296579|TTTACATTCATAGTTTGTCTTT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.263916015625	2	553.303655	1104.59276	0.61719	0.0003415	-3.6094	-0.0019971	-2.9922	-0.0016556	553.3013665632822	91.957	0.39788	91.957	91.815	92.213	0					22	14	2	0	0	0	0.17491	1	23097	23097		28.487	5.3384	1	229620			10280	5201	6734	6786	14314	14314					0.044645303632933064
LDLFEQLF	8	Unmodified	_LDLFEQLF_					0	0	0			REV__ENST00000373825.6_1_6:35802923-35802998:-|nuORF	REV__ENST00000373825.6_1_6:35802923-35802998:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2195434570312	2	512.771126	1023.5277	0.19339	9.9167E-05	-4.3348	-0.0022228	-4.1414	-0.0021236	513.2707232174464	51.119	0.20212	51.119	51.006	51.208	0					9	6	2	0	0	0	0.35759	1	10651	10651		9.3474	0	1	31399	+		10281	11620	6735	6787	14315	14315					0.016875358374363714
LDLKRWHG	8	Unmodified	_LDLKRWHG_					0	0	0		nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.8052978515625	2	512.787976	1023.5614	0.3061	0.00015696	2.7587	0.0014146	3.0648	0.0015716	512.7889986255515	91.648	0.55474	91.683	91.384	91.938	0.035446					41	19	3	0	0	0	0.53026	1	22870	22870		7.9102	1.187	1	119980			10282	7635	6736	6788	14316	14316					0.05056002119840741
LDLKRWHG	8	Unmodified	_LDLKRWHG_					0	0	0		nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.787976	1023.5614	0.46451	0.00023819	2.6575	0.0013627	3.122	0.0016009	512.7891844507632	91.67	0.33144	91.67	91.484	91.815	0	-0.0067936	-2.5027E-05	NaN	7.9102	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137010			10283	7635	6736	6788							0.05056002119840741
LDLPSRGR	8	Unmodified	_LDLPSRGR_					0	0	0			REV__ENST00000511502.5_1_1:1563563-1565907:+|nuORF	REV__ENST00000511502.5_1_1:1563563-1565907:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.26397705078125	2	457.264333	912.514114	0.18316	8.3751E-05	0.12009	5.4913E-05	0.30325	0.00013866	457.26431643892676	78.874	0.6541	78.904	78.738	79.392	0.030159					36	22	2	0	0	0	0.53494	1	18979	18979		4.756	0	1	109110	+		10284	10860	6737	6789	14317	14317					0.05435722848858404
LDMIERCI	8	Unmodified	_LDMIERCI_					0	0	0		nc|ENSG00000070748|P28329-3|CHAT;nc|ENSG00000070748|P28329-2|CHAT;ENSG00000070748|ENST00000337653|CHAT	nc|ENSG00000070748|P28329-3|CHAT	nc|ENSG00000070748|P28329-3|CHAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7497253417969	2	496.748813	991.483073	0.667	0.00033133	0.84795	0.00042122	1.515	0.00075255	496.7493231790201	92.692	0.3054	92.728	92.585	92.891	0.03653					14	10	2	0	0	0	0.53494	1	23180	23180		4.756	0.42677	1	64268			10285	763	6738	6790	14318	14318					-0.013009345719069643
LDMMGLMEVLP	11	Unmodified	_LDMMGLMEVLP_					0	0	0		nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	nc|ENSG00000169692|O15120-2|AGPAT2	nc|ENSG00000169692|O15120-2|AGPAT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8423767089844	3	416.872739	1247.59639	-0.27348	-0.00011401	2.9615	0.0012346	2.688	0.0011205	416.8739453807721	26.867	0.21923	26.954	26.809	27.029	0.0867					19	14	2	0	0	0	0.31094	1	3264	3264		0.45452	0.45452	1	10413			10286	4350	6739	6791	14319	14319					-0.01750627241017355
LDMMGLMEVLP	11	Unmodified	_LDMMGLMEVLP_					0	0	0		nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	nc|ENSG00000169692|O15120-2|AGPAT2	nc|ENSG00000169692|O15120-2|AGPAT2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	416.872739	1247.59639	0.01966	8.1957E-06	2.3931	0.00099763	2.4128	0.0010058	416.8737887174003	26.955	0.32646	26.955	26.812	27.139	0	0.00071464	-0.00039114	NaN	0.45452	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14653			10287	4350	6739	6791							-0.01750627241017355
LDMNGEELGPE	11	Unmodified	_LDMNGEELGPE_					0	0	0			REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.7655029296875	2	602.263536	1202.51252	0.085411	5.144E-05	0.21956	0.00013223	0.30497	0.00018367	602.2636651187191	25.843	0.3242	25.934	25.744	26.068	0.091507					43	27	2	0	0	0	0.41892	1	2928	2928		0	0	1	20021	+		10288	9357	6740	6792	14320	14320					-0.0806374381270416
LDNLVTNPD	9	Unmodified	_LDNLVTNPD_					0	0	0		tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.28961181640625	2	500.750921	999.48729	0.070308	3.5207E-05	-0.081556	-4.0839E-05	-0.011248	-5.6326E-06	500.7508201257045	45.576	0.3353	45.662	45.475	45.811	0.085621					22	12	2	0	0	0	0.2229	1	8880	8880		5.7319	0	1	67249			10289	13500	6741	6793	14321	14321					-0.01247430553007689
LDNTPKNYLSK	11	Unmodified	_LDNTPKNYLSK_					0	0	0		ENST00000380121.7_1_13:33010521-33020605:-|nuORF;nc|ENSG00000244754|Q92802-3|N4BP2L2	ENST00000380121.7_1_13:33010521-33020605:-|nuORF	ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	431.881103515625	3	431.566348	1291.67722	0.022234	9.5955E-06	2.1286	0.00091864	2.1509	0.00092824	431.5664221608534	43.884	1.5518	43.884	43.39	44.942	0					123	55	3	0	0	0	0.31056	1	8542	8542		6.6235	0.84002	1	73263			10290	6283	6742	6794	14322	14322					0.04304436389361399
LDPFPPRI	8	Unmodified	_LDPFPPRI_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|1|0.09|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.55517578125	2	477.774003	953.533452	-0.13109	-6.2633E-05	-0.15245	-7.2837E-05	-0.28354	-0.00013547	477.7739624859072	48.726	0.29466	48.802	48.661	48.956	0.076607					14	9	2	0	0	0	0.35759	1	9802	9802		11.64	11.64	1	39527			10291	77	6743	6795	14323	14323					0.054826791397545094
LDPGGRSDIT	10	Unmodified	_LDPGGRSDIT_					0	0	0		EPHA8|p.N363Kfs*112|1|0.25|ENSG00000070886|chr1:22588977-22588978|-/A|frameshift_variant;nc|ENSG00000070886|P29322-2|EPHA8;ENSG00000070886|ENST00000166244|EPHA8	EPHA8|p.N363Kfs*112|1|0.25|ENSG00000070886|chr1:22588977-22588978|-/A|frameshift_variant	EPHA8|p.N363Kfs*112|1|0.25|ENSG00000070886|chr1:22588977-22588978|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7631225585938	2	515.76182	1029.50909	0.48548	0.00025039	2.0303	0.0010471	2.5158	0.0012975	515.7629556268907	64.658	0.5545	64.727	64.506	65.061	0.068909					35	20	2	0	0	0	0.26541	1	14622	14622		26.268	1.5943	1	183540			10292	767	6744	6796	14324	14324					-0.00448625804438052
LDPGSTLSAI	10	Unmodified	_LDPGSTLSAI_					0	0	0		ENST00000475007.5_1_7:150500316-150501569:+|nuORF	ENST00000475007.5_1_7:150500316-150501569:+|nuORF	ENST00000475007.5_1_7:150500316-150501569:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2637023925781	2	487.263665	972.512776	0.2917	0.00014213	0.30987	0.00015099	0.60157	0.00029312	487.2636380086292	60.484	0.52241	60.484	60.282	60.805	0					33	18	3	0	0	0	0.30896	1	13481	13481		18.146	3.3081	1	123020			10293	6705	6745	6797	14325	14325					0.025420439694244124
LDPKEELRT	9	Unmodified	_LDPKEELRT_					0	0	0			REV__nc|ENSG00000120451|Q92543-2|SNX19	REV__nc|ENSG00000120451|Q92543-2|SNX19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8005981445312	2	550.800946	1099.58734	0.045526	2.5076E-05	0.051581	2.8411E-05	0.097107	5.3487E-05	550.800884309669	30.315	0.71943	30.391	30.175	30.894	0.075403					101	44	3	0	0	0	0.31389	1	4351	4351		4.897	0	1	70783	+		10294	8876	6746	6798	14326	14326					0.04152806780825813
LDPKGQPLF	9	Unmodified	_LDPKGQPLF_					0	0	0			REV__ENST00000590830.5_1_19:1578341-1584901:-|nuORF	REV__ENST00000590830.5_1_19:1578341-1584901:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.30230712890625	2	507.784567	1013.55458	0.1339	6.7995E-05	0.25872	0.00013138	0.39263	0.00019937	507.7844626353584	52.787	0.44473	52.787	52.616	53.06	0					35	15	3	0	0	0	0.26684	1	11193	11193		10.824	0.024421	1	124970	+		10295	12578	6747	6799	14327	14327					0.04834644448612835
LDPKNSDIL	9	Unmodified	_LDPKNSDIL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.D722Efs*12|1|0.07|ENSG00000096433|chr6:33669133-33669133|C/-|frameshift_variant;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7770080566406	2	507.776939	1013.53933	0.23356	0.0001186	-1.8042	-0.00091615	-1.5707	-0.00079755	507.77632209061375	90.592	0.67958	90.592	90.231	90.911	0					54	25	3	0	0	0	0.2125	1	22665	22665		17.113	0	1	149320			10296	1109	6748	6800	14328	14328					0.033097328607595955
LDPQSCGDLL	10	Unmodified	_LDPQSCGDLL_					0	0	0		ENST00000446149.6_1_1:38181546-38201012:-|nuORF;nc|ENSG00000183317|Q5JZY3-3|EPHA10;ENSG00000183317|ENST00000373048|EPHA10	ENST00000446149.6_1_1:38181546-38201012:-|nuORF	ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3523559570312	2	530.752607	1059.49066	0.8311	0.00044111	-1.3231	-0.00070227	-0.49205	-0.00026115	530.7517908350142	81.164	0.58574	81.164	80.959	81.545	0					32	19	3	0	0	0	0.31731	1	19881	19881		6.2058	0.97511	1	185300			10297	4917	6749	6801	14329	14329					-0.03670503770649702
LDPSFERAI	9	Unmodified	_LDPSFERAI_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.277099609375	2	524.277106	1046.53966	0.17758	9.3103E-05	-0.14166	-7.4269E-05	0.035925	1.8835E-05	524.2770133987791	48.535	1.1426	48.535	48.224	49.367	0					85	39	4	0	0	0	0.13341	1	9889	9889		26.268	0	1	692290	+		10298	8081	6750	6802	14330	14330					0.01825152580613576
LDPSFERAI	9	Unmodified	_LDPSFERAI_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.277099609375	2	524.277106	1046.53966	0.16111	8.4466E-05	0.25516	0.00013377	0.41627	0.00021824	524.2770900493936	48.434	0.77445	48.514	48.185	48.959	0.080029					73	25	4	0	0	0	0.07372	1	9732	9732		38.176	0	1	569060	+		10299	8081	6750	6802	14331	14331					0.01825152580613576
LDPSYAKNN	9	Unmodified	_LDPSYAKNN_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A;ENST00000526726.1_1_11:125479363-125482632:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000534472.5_1_11:125465789-125479519:+|nuORF	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7657470703125	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.53	1	103.53	103.03	104.03	0								0	0	0	0.27782	1	26616	26616		3.5965	0.60125	1				10300	2701	6751	6803	14332	14332					-0.021800108331490264
LDPWKLVSF	9	Unmodified	_LDPWKLVSF_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3345947265625	2	552.808042	1103.60153	0.58076	0.00032105	-0.89873	-0.00049682	-0.31796	-0.00017577	552.8072777405897	73.893	0.61514	73.942	73.587	74.203	0.048546					36	22	2	0	0	0	0.25579	1	17382	17382		4.3292	0	1	230080			10301	2493	6752	6804	14333	14333					0.05387503999759247
LDQCMTALDL	10	Unmodified	_LDQCMTALDL_					0	0	0		nc|ENSG00000085831|Q5SRH9-3|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.343505859375	2	561.762117	1121.50968	0.49859	0.00028009	2.553	0.0014342	3.0516	0.0017143	562.2645896620174	83.264	0.29205	83.264	83.079	83.371	0					11	9	2	0	0	0	0.31747	1	20413	20413		5.7319	0	1	36973			10302	968	6753	6805	14334	14334					-0.04621290471231987
LDQCMTALDL	10	Unmodified	_LDQCMTALDL_					0	0	0		nc|ENSG00000085831|Q5SRH9-3|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	561.762117	1121.50968	0.36612	0.00020567	1.9426	0.0010913	2.3087	0.001297	561.7633625451932	83.25	0.30663	83.272	83.164	83.471	0.021751	0.004002	-0.00038141	NaN	5.7319	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39866			10303	968	6753	6805							-0.04621290471231987
LDQRSCLDGLF	11	Unmodified	_LDQRSCLDGLF_					0	0	0			REV__ENSG00000147383|ENST00000370274|NSDHL	REV__ENSG00000147383|ENST00000370274|NSDHL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8123168945312	2	633.810987	1265.60742	0.38962	0.00024695	0.45445	0.00028803	0.84407	0.00053498	633.8111152884819	102.65	0.62245	102.69	102.33	102.95	0.040909					90	45	3	0	0	0	0.4042	1	26131	26131		3.8763	1.1411	1	266140	+		10304	9568	6754	6806	14335	14335					-0.014757655509129108
LDRAPDPTV	9	Unmodified	_LDRAPDPTV_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2796936035156	2	492.261456	982.50836	0.33908	0.00016691	0.24633	0.00012126	0.58541	0.00028817	492.2616416300111	37.712	0.87446	37.712	37.364	38.239	0					50	30	2	0	0	0	0.25281	1	6684	6684		6.7232	6.7232	1	47556			10305	4788	6755	6807	14336	14336					0.016405795465288975
LDRELISGYNI	11	Unmodified	_LDRELISGYNI_					0	0	0		nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	431.88128662109375	3	431.566348	1291.67722	-0.17332	-7.4799E-05	3.5201	0.0015191	3.3467	0.0014443	431.5665387521034	43.536	1.3105	43.625	42.753	44.064	0.088921					132	48	4	0	0	0	0.31099	1	8322	8322		1.0136	0	1	153390			10306	5502	6756	6808	14337	14337					0.04304436389406874
LDSHHHLV	8	Unmodified	_LDSHHHLV_					0	0	0		PGBD2|p.P205L|1|0.22|ENSG00000185220|chr1:248917198-248917198|C/T|missense_variant	PGBD2|p.P205L|1|0.22|ENSG00000185220|chr1:248917198-248917198|C/T|missense_variant	PGBD2|p.P205L|1|0.22|ENSG00000185220|chr1:248917198-248917198|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2718811035156	2	479.248683	956.482814	-0.26746	-0.00012818	-1.2506	-0.00059937	-1.5181	-0.00072755	479.2480249606551	44.07	0.50364	44.159	43.977	44.48	0.088924					19	16	2	0	0	0	0.3576	1	8472	8472		5.7604	1.4312	1	60916			10307	7666	6757	6809	14338	14338					0.0028314981475432432
LDSHLAPII	9	Unmodified	_LDSHLAPII_					0	0	0			REV__ENST00000497858.1_1_1:38027150-38027537:+|nuORF	REV__ENST00000497858.1_1_1:38027150-38027537:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7842712402344	2	489.784567	977.554582	0.32955	0.00016141	-0.020651	-1.0114E-05	0.3089	0.0001513	489.78450585159214	62.478	0.79429	62.478	62.175	62.969	0					48	28	2	0	0	0	0.20367	1	14148	14148		18.135	0	1	168920	+		10308	12192	6758	6810	14339	14339					0.06490644448604144
LDSIWVFF	8	Unmodified	_LDSIWVFF_					0	0	0		ENST00000507925.1_1_4:25395483-25396777:+|nuORF	ENST00000507925.1_1_4:25395483-25396777:+|nuORF	ENST00000507925.1_1_4:25395483-25396777:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.244873046875	2	513.768386	1025.52222	0.59602	0.00030622	0.0012704	6.5271E-07	0.59729	0.00030687	513.7682822753331	54.581	1.649	54.581	54.467	56.116	0					84	64	2	0	0	0	0.33972	1	11766	11766		19.439	0	1	164700			10309	6896	6759	6811	14340	14340					0.010478570456143643
LDSNYFQRL	9	Unmodified	_LDSNYFQRL_					0	0	0			REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.287353515625	2	578.293288	1154.57202	0.22155	0.00012812	0.8803	0.00050907	1.1018	0.00063719	578.2935138839429	48.718	0.3193	48.795	48.661	48.981	0.076607					13	10	2	0	0	0	0.25875	1	9758	9758		0.45834	0.15131	1	90677	+		10310	13002	6760	6812	14341	14341					0.0009193998362206912
LDTATDSDI	9	Unmodified	_LDTATDSDI_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2586975097656	2	475.719287	949.424021	0.027602	1.3131E-05	0.0572	2.7211E-05	0.084802	4.0342E-05	475.7193358774813	52.572	0.33765	52.639	52.466	52.804	0.067173					16	12	2	0	0	0	0.25644	1	10995	10995		3.9444	0	1	42131			10311	5210	6761	6813	14342	14342					-0.052714160608843486
LDTPLLCLA	9	Unmodified	_LDTPLLCLA_					0	0	0			REV__ENST00000547020.1_1_12:53880221-53880452:-|nuORF	REV__ENST00000547020.1_1_12:53880221-53880452:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774353027344	2	479.767529	957.520504	0.18268	8.7645E-05	-3.7045	-0.0017773	-3.5218	-0.0016897	479.7653853448688	78.275	0.4246	78.305	78.112	78.536	0.030159					18	14	2	0	0	0	0.25051	1	18790	18790		7.9102	0.62092	1	73040	+		10312	12418	6762	6814	14343	14343					0.040044799653287555
LDVCIFNFF	9	Unmodified	_LDVCIFNFF_					0	0	0		ENST00000430246.6_1_14:21702260-21731069:-|nuORF	ENST00000430246.6_1_14:21702260-21731069:-|nuORF	ENST00000430246.6_1_14:21702260-21731069:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2720336914062	2	559.272978	1116.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.24	1	105.27	104.77	105.77	0.034004								0	0	0	0.27782	1	26925	26925		3.5965	1.5367	1				10313	6484	6763	6815	14344	14344					-0.0222011766036303
LDVEHLGG	8	Unmodified	_LDVEHLGG_					0	0	0		ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.2164611816406	2	420.216517	838.418482	0.10994	4.6197E-05	-0.20854	-8.7634E-05	-0.098609	-4.1437E-05	420.21640593262055	51.023	0.46898	51.093	50.936	51.405	0.069874					29	18	2	0	0	0	0.53817	1	10548	10548		2.5775	0	1	130400			10314	3587	6764	6816	14345	14345					-0.007190500620367857
LDVLPDARP	9	Unmodified	_LDVLPDARP_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.2796936035156	2	498.279649	994.544745	0.40871	0.00020365	0.031602	1.5747E-05	0.44032	0.0002194	498.2794842033511	38.251	0.52087	38.251	38.076	38.597	0					34	17	3	0	0	0	0.27929	1	6812	6812		9.3831	3.1773	1	61281			10315	1528	6765	6817	14346	14346					0.04725456443236453
LDVLPDARP	9	Unmodified	_LDVLPDARP_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.279649	994.544745	0.40673	0.00020266	-0.56082	-0.00027944	-0.15409	-7.6781E-05	498.2793805158615	38.146	0.5172	38.233	38.047	38.564	0.08688	-0.0090119	-0.0004302	NaN	9.3831	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58344			10316	1528	6765	6817							0.04725456443236453
LDWKELVF	8	Unmodified	_LDWKELVF_					0	0	0			REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1	REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2876586914062	2	525.286943	1048.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.939	1	92.939	92.439	93.439	0								0	0	0	0.38822	1	23398	23398		7.9102	2.6795	1		+		10317	9379	6766	6818	14347	14347					0.03699528591369017
LDWPVPAFDII	11	Unmodified	_LDWPVPAFDII_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3448486328125	2	643.344989	1284.67542	0.57816	0.00037196	-2.6266	-0.0016898	-2.0485	-0.0013179	643.3442152257844	83.941	0.47115	83.941	83.634	84.105	0					25	15	3	0	0	0	0.20727	1	20669	20669		29.082	4.0906	1	133640			10318	3204	6767	6819	14348	14348					0.04447427371428603
LDWPVPAFDII	11	Unmodified	_LDWPVPAFDII_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	643.344989	1284.67542	0.22546	0.00014505	-1.8098	-0.0011643	-1.5844	-0.0010193	643.3448547605169	83.94	0.61491	83.962	83.527	84.142	0.021744	0.010545	0.00050422	NaN	29.082	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94037			10319	3204	6767	6819							0.04447427371428603
LDYESRRLY	9	Unmodified	_LDYESRRLY_					0	0	0		ENSG00000040731|ENST00000264463|CDH10	ENSG00000040731|ENST00000264463|CDH10	ENSG00000040731|ENST00000264463|CDH10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.8120727539062	2	607.811845	1213.60914	0.52775	0.00032077	-0.35806	-0.00021763	0.16969	0.00010314	607.8114850588031	38.326	0.76896	38.326	38.101	38.87	0					59	27	4	0	0	0	0.34372	1	6914	6914		0.45834	0	1	94733			10320	534	6768	6820	14349	14349					0.01087611529374044
LDYIRSPLPF	10	Unmodified	_LDYIRSPLPF_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000463118.1_1_7:91729006-91736737:+|nuORF;ENST00000487258.5_1_7:91722364-91739470:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.7996215820312	2	610.837331	1219.66011	-0.43139	-0.00026351	-3.2016	-0.0019557	-3.633	-0.0022192	610.83524369359	42.543	0.32026	42.543	42.333	42.654	0					14	10	2	0	0	0	0.31721	1	8045	8045		8.7454	2.5396	1	49497			10321	2376	6769	6821	14350	14350					0.05906560574226205
LDYSATPVRL	10	Unmodified	_LDYSATPVRL_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3271484375	2	567.811313	1133.60807	-0.13181	-7.4844E-05	0.14234	8.0823E-05	0.01053	5.979E-06	567.8114905503401	30.127	0.22257	30.202	30.073	30.295	0.075403					21	14	2	0	0	0	0.45945	1	4209	4209		2.9952	0.93549	1	18001	+		10322	8600	6770	6822	14351	14351					0.04661397160475644
LEADSHLDEV	10	Unmodified	_LEADSHLDEV_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.791748046875	2	564.264393	1126.51423	0.34339	0.00019376	0.19705	0.00011119	0.54044	0.00030495	564.2643459820431	53.508	0.68103	53.508	53.361	54.042	0					37	25	2	0	0	0	0.31838	1	11339	11339		1.4819	0	1	139510			10323	966	6771	6823	14352	14352					-0.04396366732498791
LEALNITVF	9	Unmodified	_LEALNITVF_					0	0	0		ENSG00000160870|ENST00000336374|CYP3A7;ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;nc|ENSG00000160870|P24462-2|CYP3A7	ENSG00000160870|ENST00000336374|CYP3A7	ENSG00000160870|ENST00000336374|CYP3A7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2808532714844	2	510.292225	1018.5699	0.53697	0.00027401	-0.51369	-0.00026213	0.023282	1.1881E-05	510.29204303924496	92.533	0.49194	92.57	92.371	92.863	0.03653					24	17	2	0	0	0	0.28587	1	23154	23154		8.5933	2.3875	1	88605			10324	3783	6772	6824	14353	14353					0.061355112458159056
LEAMESHGSIK	11	Unmodified	_LEAMESHGSIK_					0	0	0			REV__CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	REV__CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7794799804688	2	601.297713	1200.58087	0.32006	0.00019245	-0.13399	-8.0565E-05	0.18607	0.00011188	601.2976576000207	46.553	0.85862	46.636	46.546	47.405	0.083096					68	43	2	0	0	0	0.38315	1	9231	9231		8.1555	0.8663	1	308610	+		10325	7860	6773	6825	14354	14354					-0.011394544422046238
LEAPHDAII	9	Unmodified	_LEAPHDAII_					0	0	0			REV__nc|ENSG00000124813|Q13950-3|RUNX2	REV__nc|ENSG00000124813|Q13950-3|RUNX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7672119140625	2	489.766374	977.518196	0.28831	0.00014121	1.3006	0.00063698	1.5889	0.00077818	489.76710471404107	96.287	0.48924	96.326	96.037	96.527	0.039772					44	27	2	0	0	0	0.29576	1	24191	24191		7.2892	0	1	190190	+		10326	8963	6774	6826	14355	14355					0.028537675519032746
LEATRWLA	8	Unmodified	_LEATRWLA_					0	0	0		ENST00000360105.8_1_19:13207240-13207303:+|nuORF	ENST00000360105.8_1_19:13207240-13207303:+|nuORF	ENST00000360105.8_1_19:13207240-13207303:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2552795410156	2	480.269084	958.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.441	1	53.506	53.006	54.006	0.06543								0	0	0	0.38822	1	11224	11224		2.5775	0	1				10327	6148	6775	6827	14356	14356					0.042694911343687636
LEAVPLFSPEL	11	Unmodified	_LEAVPLFSPEL_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.192626953125	3	405.560423	1213.65944	0.078073	3.1663E-05	1.6575	0.00067221	1.7356	0.00070388	405.56077177842604	38.793	0.38563	38.88	38.744	39.13	0.08688					20	14	2	0	0	0	0.31101	1	6822	6822		0.45452	0.1855	1	30989	+		10328	9079	6776	6828	14357	14357					0.0611572113452894
LECDPGTHKF	10	Unmodified	_LECDPGTHKF_					0	0	0			REV__ENST00000427240.1_1_1:39997676-40011451:-|nuORF	REV__ENST00000427240.1_1_1:39997676-40011451:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7631225585938	2	573.766049	1145.51754	0.22505	0.00012913	-0.71343	-0.00040934	-0.48838	-0.00028022	573.7636467612152	56.096	2.5815	56.162	55.705	58.287	0.066448					399	97	8	0	0	0	0.46746	1	12636	12636		1.4819	0.79152	1	17614000	+		10329	11836	6777	6829	14358	14358					-0.04939395159453852
LECSSCSRSSG	11	Unmodified	_LECSSCSRSSG_					0	0	0			REV__CHRM3|p.Y293C|1|0.1|ENSG00000133019|chr1:239908329-239908329|A/G|missense_variant	REV__CHRM3|p.Y293C|1|0.1|ENSG00000133019|chr1:239908329-239908329|A/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3106689453125	2	558.22643	1114.43831	0.56016	0.00031269	1.5419	0.00086072	2.102	0.0011734	558.2272724502798	88.375	0.31104	88.405	88.224	88.535	0.030037					12	11	2	0	0	0	0.31032	1	21800	21800		7.609	1.4032	1	42646	+		10330	7816	6778	6830	14359	14359					-0.11433410175914105
LEDERKQRAL	10	Unmodified	_LEDERKQRAL_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3491821289062	2	629.349126	1256.6837	0.14802	9.3157E-05	0.033999	2.1397E-05	0.18202	0.00011455	629.3491868925952	19.248	0.6881	19.343	19.158	19.846	0.095232					219	78	4	0	0	0	0.47318	1	1337	1337		0.40072	0	1	448190			10331	2625	6779	6831	14360	14360					0.06562374340774113
LEDFRATPF	9	Unmodified	_LEDFRATPF_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7576904296875	2	548.277106	1094.53966	0.31695	0.00017378	2.5433	0.0013944	2.8602	0.0015682	548.2783667997129	90.422	0.50633	90.422	90.256	90.762	0					27	18	2	0	0	0	0.24635	1	22677	22677		10.824	1.4408	1	54050			10332	2695	6780	6832	14361	14361					-0.0038284741938241496
LEDFRKAVMV	10	Unmodified	_LEDFRKAVMV_					0	0	0		ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.270751953125	2	604.328816	1206.64308	0.67962	0.00041072	0.10353	6.2565E-05	0.78315	0.00047328	604.3289351105101	73.934	0.3839	73.983	73.748	74.132	0.048546					21	13	2	0	0	0	0.30896	1	17452	17452		8.7454	0	1	242300			10333	2793	6781	6833	14362	14362					0.04802316696782327
LEDPLNSPKY	10	Unmodified	_LEDPLNSPKY_					0	0	0		nc|ENSG00000141664|Q9C0B9-2|ZCCHC2;ENSG00000141664|ENST00000269499|ZCCHC2	nc|ENSG00000141664|Q9C0B9-2|ZCCHC2	nc|ENSG00000141664|Q9C0B9-2|ZCCHC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7830810546875	2	588.300778	1174.587	0.20005	0.00011769	1.9528	0.0011489	2.1529	0.0012665	588.3017337001216	73.276	0.76958	73.276	72.718	73.487	0					48	27	2	0	0	0	0.34138	1	17469	17469		18.146	0	1	648820			10334	3073	6782	6834	14363	14363					0.006693870609751684
LEDWVARLMA	10	Unmodified	_LEDWVARLMA_					0	0	0		ENST00000563767.1_1_16:89857732-89858395:-|nuORF;nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA	ENST00000563767.1_1_16:89857732-89858395:-|nuORF	ENST00000563767.1_1_16:89857732-89858395:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.769287109375	2	602.313166	1202.61178	0.38131	0.00022967	-3.0175	-0.0018175	-2.6362	-0.0015878	602.3113119202843	48.557	0.51721	48.637	48.442	48.959	0.080029					28	16	3	0	0	0	0.45945	1	9699	9699		2.9952	1.151	1	156430			10335	5130	6783	6835	14364	14364					0.018577436626628696
LEEAAAAAR	9	Unmodified	_LEEAAAAAR_					0	0	0		ENST00000321870.2_1_8:65493585-65493660:+|nuORF	ENST00000321870.2_1_8:65493585-65493660:+|nuORF	ENST00000321870.2_1_8:65493585-65493660:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.2401123046875	2	451.240524	900.466495	-0.013385	-6.0397E-06	-0.7458	-0.00033654	-0.75919	-0.00034258	451.24018109080185	29.112	0.32972	29.112	28.991	29.32	0					33	19	2	0	0	0	0.32112	1	4046	4046		3.9444	0	1	19442			10336	6034	6784	6836	14365	14365					0.012280238579819525
LEEGWRVL	8	Unmodified	_LEEGWRVL_					0	0	0		ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2741394042969	2	501.274367	1000.53418	-0.15875	-7.9579E-05	-0.020744	-1.0399E-05	-0.1795	-8.9978E-05	501.2742272320441	44.278	0.41195	44.278	44.09	44.502	0					33	13	3	0	0	0	0.35492	1	8610	8610		16.942	1.0951	1	142610			10337	6701	6785	6837	14366	14366					0.03393473788821666
LEEGWRVL	8	Unmodified	_LEEGWRVL_					0	0	0		ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	501.274367	1000.53418	0.012327	6.1791E-06	-0.32866	-0.00016475	-0.31633	-0.00015857	501.27415383622684	44.161	0.41636	44.25	44.064	44.48	0.088921	-0.014051	-0.00020938	NaN	16.942	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92159			10338	6701	6785	6837							0.03393473788821666
LEEGYETAL	9	Unmodified	_LEEGYETAL_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2527465820312	2	512.745305	1023.47606	0.19457	9.9764E-05	2.5678	0.0013166	2.7624	0.0014164	512.746611314268	58.202	0.10476	58.202	58.112	58.217	0					5	3	2	0	0	0	0.18479	1	12795	12795		26.884	5.137	1	112800			10339	283	6786	6838	14367	14367					-0.03474252647151843
LEELKMAEF	9	Unmodified	_LEELKMAEF_					0	0	0		ENST00000548092.5_1_12:112563419-112570971:+|nuORF;ENST00000550051.5_1_12:112563419-112579054:+|nuORF	ENST00000548092.5_1_12:112563419-112570971:+|nuORF	ENST00000548092.5_1_12:112563419-112570971:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8245239257812	2	555.281	1108.54745	0.49228	0.00027336	-3.0099	-0.0016713	-2.5176	-0.001398	555.2791381819369	87.281	1.121	87.281	86.992	88.113	0					47	42	2	0	0	0	0.19376	1	21875	21875		25.399	2.2509	1	109790			10340	7082	6787	6839	14368	14368					-0.0024845621412623586
LEENHIEF	8	Unmodified	_LEENHIEF_					0	0	0			REV__ENSG00000166801|ENST00000675163|FAM111A	REV__ENSG00000166801|ENST00000675163|FAM111A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3098754882812	2	515.745639	1029.47673	0.62479	0.00032224	1.3224	0.00068202	1.9472	0.0010043	515.7451924787829	54.93	0.72049	54.93	54.573	55.293	0					58	28	4	0	0	0	0.35713	1	11892	11892		9.3474	0	1	340180	+		10341	10091	6788	6840	14369	14369					-0.03683413207409103
LEEPKKMT	8	Unmodified	_LEEPKKMT_					0	0	0		ENSG00000164609|ENST00000297151|SLU7;ENST00000521190.5_1_5:159840839-159846079:-|nuORF	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2531433105469	2	488.26261	974.510668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.914	1	27.996	27.496	28.496	0.082134								0	0	0	0.38822	1	3557	3557		1.8442	0.36234	1				10342	4020	6789	6841	14370	14370					0.022392919599724337
LEEQHHQAMQ	10	Unmodified	_LEEQHHQAMQ_					0	0	0		nc|ENSG00000121440|Q9UPQ7-3|PDZRN3;ENSG00000121440|ENST00000263666|PDZRN3	nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.7839965820312	2	625.782761	1249.55097	0.29601	0.00018524	1.7575	0.0010998	2.0535	0.001285	625.7838778020532	69.188	0.97829	69.188	68.983	69.961	0					74	33	3	0	0	0	0.26541	3	16167	16167;16215;16276		26.268	12.362	1	507980			10343	2153	6790	6842	14371;14372;14373	14371					-0.06382393387548291
LEEQHHQAMQ	10	Unmodified	_LEEQHHQAMQ_					0	0	0		nc|ENSG00000121440|Q9UPQ7-3|PDZRN3;ENSG00000121440|ENST00000263666|PDZRN3	nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.7835693359375	2	625.782761	1249.55097	0.1753	0.0001097	1.611	0.0010082	1.7863	0.0011179	625.7836673818308	69.173	0.77929	69.235	68.945	69.724	0.062126					62	28	3	0	0	0	0.26541	3	15963	15963;16014;16020		26.268	12.362	1	765900			10344	2153	6790	6842	14374;14375;14376	14374					-0.06382393387548291
LEEQTEKS	8	Unmodified	_LEEQTEKS_					0	0	0			REV__GOLGA5|p.A507Qfs*15|1|0.05|ENSG00000066455|chr14:92819733-92819733|A/-|frameshift_variant	REV__GOLGA5|p.A507Qfs*15|1|0.05|ENSG00000066455|chr14:92819733-92819733|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2344055175781	2	482.235104	962.455655	-0.50437	-0.00024323	0.24207	0.00011673	-0.2623	-0.00012649	482.23512921052077	23.503	0.325	23.503	23.366	23.691	0					41	31	2	0	0	0	0.5411	1	2416	2416		0.6015	0	1	18135	+		10345	8114	6791	6843	14377	14377					-0.027074233069356524
LEEQTEKS	8	Unmodified	_LEEQTEKS_					0	0	0			REV__GOLGA5|p.A507Qfs*15|1|0.05|ENSG00000066455|chr14:92819733-92819733|A/-|frameshift_variant	REV__GOLGA5|p.A507Qfs*15|1|0.05|ENSG00000066455|chr14:92819733-92819733|A/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	482.235104	962.455655	-0.25275	-0.00012189	-0.22104	-0.00010659	-0.47379	-0.00022848	482.2349564144842	23.25	0.25333	23.352	23.283	23.536	0.10178	-0.07545	-0.00028541	NaN	0.6015	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13650	+		10346	8114	6791	6843							-0.027074233069356524
LEESVKEERK	10	Unmodified	_LEESVKEERK_					0	0	0		ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.83837890625	2	623.835517	1245.65648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.94	1	46.94	46.44	47.44	0								0	0	0	0.33892	1	9390	9390		1.4819	0	1				10347	5014	6792	6844	14378	14378					0.04347846009704881
LEETKMTT	8	Unmodified	_LEETKMTT_					0	0	0			REV__ENSG00000182771|ENST00000327946|GRID1	REV__ENSG00000182771|ENST00000327946|GRID1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.69171142578125	2	476.736425	951.458298	-0.50679	-0.00024161	-0.27963	-0.00013331	-0.78642	-0.00037491	476.736268688124	42.47	0.41224	42.56	42.342	42.754	0.089764					23	14	2	0	0	0	0.51415	1	7966	7966		10.824	0	1	76282	+		10348	10576	6793	6845	14379	14379					-0.01937291173635458
LEETKMTTF	9	Unmodified	_LEETKMTTF_					0	0	0			REV__ENSG00000182771|ENST00000327946|GRID1	REV__ENSG00000182771|ENST00000327946|GRID1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2850952148438	2	550.270632	1098.52671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.827	1	42.827	42.327	43.327	0								0	0	0	0.27613	1	8146	8146		3.9444	0.3479	1		+		10349	10576	6794	6846	14380	14380					-0.018610465937854315
LEEVQQEL	8	Unmodified	_LEEVQQEL_					0	0	0			REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF	REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.25274658203125	2	494.253297	986.492041	-0.061005	-3.0152E-05	-0.22531	-0.00011136	-0.28632	-0.00014151	494.25311083280894	40.263	0.49359	40.263	40.012	40.505	0					29	17	2	0	0	0	0.53557	1	7405	7405		4.3292	0	1	73016	+		10350	12473	6795	6847	14381	14381					-0.0017454641023277873
LEEVWGYF	8	Unmodified	_LEEVWGYF_					0	0	0		nc|ENSG00000120498|Q8IYF3-2|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7465209960938	2	521.74765	1041.48075	0.099893	5.2119E-05	-0.93228	-0.00048642	-0.83239	-0.0004343	521.7469634421975	46.472	0.42751	46.558	46.365	46.793	0.085621					43	28	2	0	0	0	0.52502	1	9167	9167		9.3474	1.4373	1	366510			10351	2123	6796	6848	14382	14382					-0.038333237137067044
LEFGAKEF	8	Unmodified	_LEFGAKEF_					0	0	0			REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7422790527344	2	470.742368	939.470183	-0.09818	-4.6218E-05	0.14146	6.6589E-05	0.043275	2.0371E-05	470.74229717182607	72	1.2446	72	71.502	72.747	0					102	43	3	0	0	0	0.53026	1	17187	17187		7.9102	0	1	665400	+		10352	13161	6797	6849	14383	14383					-0.001973063681361964
LEFKHLPF	8	Unmodified	_LEFKHLPF_					0	0	0			REV__ENSG00000128313|ENST00000249044|APOL5	REV__ENSG00000128313|ENST00000249044|APOL5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3098754882812	2	515.789653	1029.56475	0.50354	0.00025972	2.6376	0.0013605	3.1411	0.0016202	515.7903353733268	55.353	0.12785	55.418	55.335	55.463	0.065128					6	4	2	0	0	0	0.35759	1	11787	11787		11.64	3.7301	1	31427	+		10353	9014	6798	6850	14384	14384					0.051152521738458745
LEFNSKIL	8	Unmodified	_LEFNSKIL_					0	0	0		ENST00000468445.1_1_7:95216267-95216813:-|nuORF	ENST00000468445.1_1_7:95216267-95216813:-|nuORF	ENST00000468445.1_1_7:95216267-95216813:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2791748046875	2	482.279118	962.543683	0.14023	6.7631E-05	0.29647	0.00014298	0.4367	0.00021061	482.2790978513341	55.511	0.46743	55.577	55.374	55.842	0.065132					32	16	3	0	0	0	0.51967	1	11889	11889		10.074	0	1	168520			10354	6656	6799	6851	14385	14385					0.06091242074330694
LEFQNDEI	8	Unmodified	_LEFQNDEI_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.9274597167969	2	504.237647	1006.46074	0.15045	7.5864E-05	0.16793	8.4675E-05	0.31838	0.00016054	504.23782038602064	60.321	0.45309	60.395	60.125	60.578	0.073421					27	15	2	0	0	0	0.35492	1	13325	13325		16.942	0	1	141260			10355	4900	6800	6852	14386	14386					-0.042231194443274944
LEFSEYHLI	9	Unmodified	_LEFSEYHLI_					0	0	0			REV__ENST00000505328.1_1_4:108991620-108999477:-|nuORF	REV__ENST00000505328.1_1_4:108991620-108999477:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.267822265625	2	575.792589	1149.57063	0.13841	7.9698E-05	0.79328	0.00045676	0.93169	0.00053646	575.7928765472874	72.684	0.47342	72.74	72.538	73.012	0.055931					17	15	2	0	0	0	0.25174	1	17114	17114		7.2892	0	1	59842	+		10356	12222	6801	6853	14387	14387					0.0018230589485028759
LEFTQSHLGE	10	Unmodified	_LEFTQSHLGE_					0	0	0		ENST00000570589.5_1_17:55065091-55074421:+|nuORF	ENST00000570589.5_1_17:55065091-55074421:+|nuORF	ENST00000570589.5_1_17:55065091-55074421:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7849731445312	2	580.782753	1159.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.81	1	105.81	105.31	106.31	0								0	0	0	0.33599	1	27269	27269		4.897	1.3005	1				10357	7194	6802	6854	14388	14388					-0.022440701158984666
LEGLVLDVL	9	Unmodified	_LEGLVLDVL_					0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2225036621094	2	485.794601	969.574648	0.25586	0.00012429	-0.029707	-1.4432E-05	0.22615	0.00010986	485.79437788446904	91.966	0.32102	91.966	91.815	92.136	0					22	11	3	0	0	0	0.2418	1	23104	23104		13.906	0	1	122310	+	+	10358	7855	6803	6855	14389	14389					0.08864395388559387
LEGTSEIICL	10	Unmodified	_LEGTSEIICL_					0	0	0		CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3	CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2633666992188	2	539.278457	1076.54236	0.41213	0.00022225	-0.53036	-0.00028601	-0.11823	-6.3759E-05	539.2782225547348	47.733	0.75956	47.733	47.4	48.159	0					55	25	3	0	0	0	0.43972	1	9706	9706		6.7232	0	1	240220			10359	249	6804	6856	14390	14390					0.007152399232609241
LEHLDFVL	8	Unmodified	_LEHLDFVL_					0	0	0			REV__ENST00000531443.5_1_8:107696561-107715155:+|nuORF	REV__ENST00000531443.5_1_8:107696561-107715155:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2713928222656	2	493.271293	984.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.545	1	73.598	73.098	74.098	0.052574								0	0	0	0.38822	1	17334	17334		4.756	0	1		+		10360	12358	6805	6857	14391	14391					0.03514955557295707
LEHPTSTVL	9	Unmodified	_LEHPTSTVL_					0	0	0			REV__CADM3|p.H243Pfs*4|1|0.14|ENSG00000162706|chr1:159196395-159196396|-/C|frameshift_variant	REV__CADM3|p.H243Pfs*4|1|0.14|ENSG00000162706|chr1:159196395-159196396|-/C|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7719421386719	2	498.771657	995.528761	0.47598	0.00023741	0.24541	0.0001224	0.72138	0.00035981	498.77164154588576	47.462	0.66837	47.462	47.293	47.961	0					50	22	4	0	0	0	0.13538	1	9538	9538		36.044	1.9418	1	372970	+		10361	7747	6806	6858	14392	14392					0.030817502063200664
LEHVMPESL	9	Unmodified	_LEHVMPESL_					0	0	0			REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF	REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7739868164062	2	527.765517	1053.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.836	1	54.901	54.401	55.401	0.065128								0	0	0	0.21527	1	11651	11651		15.847	3.3156	1		+		10362	8915	6807	6859	14393	14393					-0.008136095283589384
LEHVMPESL	9	Unmodified	_LEHVMPESL_					0	0	0			REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF	REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7733154296875	2	527.765517	1053.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.855	1	54.92	54.42	55.42	0.065128								0	0	0	0.21527	1	11657	11657		15.847	1.0089	1		+		10363	8915	6807	6859	14394	14394					-0.008136095283589384
LEHVVCHP	8	Unmodified	_LEHVVCHP_					0	0	0			REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.10162353515625	2	467.234187	932.453822	0.39441	0.00018428	-1.56	-0.00072889	-1.1656	-0.00054461	467.23324224316474	68.673	0.13282	68.673	68.587	68.72	0					7	4	2	0	0	0	0.3576	1	16009	16009		5.2307	0	1	35967	+		10364	9449	6808	6860	14395	14395					-0.01510710805882809
LEIQWWYLK	9	Unmodified	_LEIQWWYLK_					0	0	0		ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.848876953125	2	639.847699	1277.68084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.667	1	53.667	53.167	54.167	0								0	0	0	0.26958	1	11429	11429		5.2969	0.76802	1				10365	5110	6809	6861	14396	14396					0.0531115095388941
LEIQWWYLK	9	Unmodified	_LEIQWWYLK_					0	0	0		ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.8516235351562	2	639.847699	1277.68084	0.36697	0.0002348	2.9728	0.0019021	3.3397	0.0021369	639.8499280349765	53.584	0.30728	53.649	53.482	53.789	0.06543					25	14	2	0	0	0	0.32831	1	11265	11265		2.9952	0.49676	1	88759			10366	5110	6809	6861	14397	14397					0.0531115095388941
LEKEGPQDDM	10	Unmodified	_LEKEGPQDDM_					0	0	0			REV__nc|ENSG00000188394|Q9Y3P9-4|RABGAP1	REV__nc|ENSG00000188394|Q9Y3P9-4|RABGAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2950439453125	2	581.258253	1160.50195	0.42736	0.0002484	-0.23148	-0.00013455	0.19588	0.00011386	581.2576409802493	61.6	0.93497	61.6	61.559	62.494	0					70	42	2	0	0	0	0.31708	1	14076	14076		7.609	4.0125	1	566980	+		10367	7983	6810	6862	14398	14398					-0.07187726467145694
LEKHHKPG	8	Unmodified	_LEKHHKPG_					0	0	0		ENSG00000182405|ENST00000397766|PGBD4	ENSG00000182405|ENST00000397766|PGBD4	ENSG00000182405|ENST00000397766|PGBD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7184753417969	2	473.266876	944.519199	-0.21822	-0.00010328	-1.2514	-0.00059227	-1.4697	-0.00069554	473.26621726554214	34.457	0.2808	34.533	34.336	34.617	0.076244					17	11	2	0	0	0	0.3576	1	5466	5466		2.5775	0.51773	1	25320			10368	4874	6811	6863	14399	14399					0.04472026711471244
LEKIKLVLPVL	11	Unmodified	_LEKIKLVLPVL_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.8335266113281	3	422.291608	1263.853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.269	1	12.331	11.831	12.831	0.061733								0	0	0	0.34185	1	44	44		0.094841	0	1		+		10369	13284	6812	6864	14400	14400					0.23162302641389942
LEKLKRRNEP	10	Unmodified	_LEKLKRRNEP_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.384765625	2	641.883136	1281.75172	-0.022172	-1.4232E-05	-0.73385	-0.00047105	-0.75602	-0.00048528	641.882595686063	90.087	0.59709	90.121	89.906	90.503	0.034065					41	24	2	0	0	0	0.31773	1	22358	22358		4.897	4.897	1	744590	+		10370	8978	6813	6865	14401	14401					0.12211243991418996
LEKLQREKDKK	11	Unmodified	_LEKLQREKDKK_					0	0	0			REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF	REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2834167480469	3	472.284064	1413.83036	-0.017029	-8.0423E-06	-0.66122	-0.00031228	-0.67825	-0.00032033	472.28372926122665	95.481	2.0351	95.52	94.766	96.801	0.038864					172	98	3	0	0	0	0.41713	1	23899	23899		0.40827	0	1	610880	+		10371	11129	6814	6866	14402	14402					0.14000051505809097
LEKLVDIL	8	Unmodified	_LEKLVDIL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.79571533203125	2	471.797143	941.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.029	1	78.063	77.563	78.563	0.034485								0	0	0	0.38822	1	18704	18704		2.3027	0	1		+		10372	8965	6815	6867	14403	14403					0.10660699251184269
LEKRQKRRWYL	11	Unmodified	_LEKRQKRRWYL_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.978271484375	3	525.979198	1574.91576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.047	1	99.047	98.547	99.547	0								0	0	0	0.34191	1	25255	25255		0.073264	0.073264	1		+		10373	9703	6816	6868	14404	14404					0.15130261482181595
LEKSFYQF	8	Unmodified	_LEKSFYQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8012084960938	2	531.26875	1060.52295	0.65534	0.00034816	0.85326	0.00045331	1.5086	0.00080147	531.2695406470295	54.326	0.21078	54.326	54.218	54.429	0					13	7	2	0	0	0	0.35682	1	11640	11640		10.824	4.1008	1	92359			10374	531	6817	6869	14405	14405					-0.004893483053365344
LEKSFYQF	8	Unmodified	_LEKSFYQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3216552734375	2	531.26875	1060.52295	0.6466	0.00034352	0.59344	0.00031528	1.24	0.00065879	531.2689499292259	54.319	0.24631	54.384	54.219	54.466	0.065128					13	8	2	0	0	0	0.34866	1	11500	11500		22.736	0	1	100610			10375	531	6817	6869	14406	14406					-0.004893483053365344
LEKTSKRDD	9	Unmodified	_LEKTSKRDD_					0	0	0		ENST00000399107.5_2_5:89793473-89793512:+|nuORF	ENST00000399107.5_2_5:89793473-89793512:+|nuORF	ENST00000399107.5_2_5:89793473-89793512:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8008422851562	2	546.288202	1090.56185	0.35258	0.00019261	4.0958	0.0022375	4.4484	0.0024301	546.2905951672234	61.975	0.78952	61.975	61.786	62.575	0					37	27	2	0	0	0	0.22912	1	14141	14141		18.146	2.2992	1	244210			10376	6357	6818	6870	14407	14407					0.02019332258396389
LEKVKHAAAAR	11	Unmodified	_LEKVKHAAAAR_					0	0	0			REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF	REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3588256835938	2	597.359296	1192.70404	0.22448	0.0001341	-0.89703	-0.00053585	-0.67255	-0.00040175	597.3586377221333	94.078	0.82838	94.116	93.914	94.742	0.038094					87	38	4	0	0	0	0.38777	1	23617	23617		7.1017	0.89594	1	489430	+		10377	9284	6819	6871	14408	14408					0.11539589791209437
LEKVKHAAAAR	11	Unmodified	_LEKVKHAAAAR_					0	0	0			REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF	REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	597.359296	1192.70404	0.36414	0.00021752	-0.93459	-0.00055828	-0.57044	-0.00034076	597.3585999021603	94.112	0.7448	94.112	93.941	94.685	0	-0.0024352	-1.8997E-05	NaN	7.1017	86	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	537010	+		10378	9284	6819	6871							0.11539589791209437
LEKVRREHK	9	Unmodified	_LEKVRREHK_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B;REV__ENSG00000264424|ENST00000255381|MYH4	REV__ENSG00000264424|ENST00000255381|MYH4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8561401367188	2	597.856921	1193.69929	0.28927	0.00017294	-1.0252	-0.00061293	-0.73593	-0.00043998	597.8562035654318	90.937	0.55321	90.937	90.683	91.237	0					46	19	3	0	0	0	0.33849	1	22821	22821		1.6526	0.32309	1	260060	+		10379	8219;11118	6820	6872	14409	14409					0.11018705648461946
LEKVRREHK	9	Unmodified	_LEKVRREHK_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B;REV__ENSG00000264424|ENST00000255381|MYH4	REV__ENSG00000264424|ENST00000255381|MYH4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.857421875	2	597.856921	1193.69929	-0.027075	-1.6187E-05	-0.55283	-0.00033051	-0.5799	-0.0003467	597.8564975901465	90.917	0.72655	90.953	90.657	91.384	0.035446					61	27	3	0	0	0	0.33849	2	22579	22579;22683		1.6526	1.1279	1	276380	+		10380	8219;11118	6820	6872	14410;14411	14410					0.11018705648461946
LEKYEDNP	8	Unmodified	_LEKYEDNP_					0	0	0		tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.5932312011719	2	504.237647	1006.46074	0.40298	0.0002032	-0.72163	-0.00036387	-0.31865	-0.00016068	504.2373792480264	60.383	0.52441	60.383	60.119	60.643	0					43	18	3	0	0	0	0.35759	1	13473	13473		10.074	2.1638	1	168640			10381	13676	6821	6873	14412	14412					-0.042231194443274944
LELCWLIKM	9	Unmodified	_LELCWLIKM_					0	0	0			REV__ENST00000307116.6_1_10:74790078-74804739:-|nuORF	REV__ENST00000307116.6_1_10:74790078-74804739:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8148193359375	2	574.813956	1147.61336	-0.10714	-6.1584E-05	0.13047	7.4993E-05	0.023328	1.3409E-05	574.8140094735032	26.946	0.68373	27.032	26.73	27.414	0.0867					82	47	2	0	0	0	0.34704	1	3218	3218		0.52476	0	1	26989	+		10382	11362	6822	6874	14413	14413					0.04545661427096093
LELEDLLIQ	9	Unmodified	_LELEDLLIQ_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-7|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-7|RIMS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.3058471679688	2	543.308072	1084.60159	-0.048835	-2.6532E-05	-2.5316	-0.0013754	-2.5804	-0.001402	543.3064842956171	28.933	0.20732	29.011	28.878	29.086	0.078289					25	15	2	0	0	0	0.34704	1	3860	3860		0.52476	0	1	18555	+		10383	10402	6823	6875	14414	14414					0.06267459209107074
LELHQQEQ	8	Unmodified	_LELHQQEQ_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.256103515625	2	512.756538	1023.49852	0.14422	7.3948E-05	-0.24766	-0.00012699	-0.10345	-5.3043E-05	512.7564163822067	35.207	0.63603	35.285	34.933	35.569	0.078827					31	24	2	0	0	0	0.53858	1	5676	5676		2.3027	0	1	35915			10384	621	6824	6876	14415	14415					-0.012286084588595259
LELIRTRYTEA	11	Unmodified	_LELIRTRYTEA_					0	0	0			REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.5892028808594	3	455.589265	1363.74596	0.309	0.00014078	-0.37313	-0.00016999	-0.064129	-2.9216E-05	455.5890764168245	49.662	0.59825	49.662	49.452	50.05	0					47	20	3	0	0	0	0.40978	1	10209	10209		2.084	0.75432	1	329500	+		10385	9501	6825	6877	14416	14416					0.07864100689107545
LELIRTRYTEA	11	Unmodified	_LELIRTRYTEA_					0	0	0			REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	455.589265	1363.74596	0.091412	4.1646E-05	0.13137	5.9849E-05	0.22278	0.0001015	455.58917446265446	49.623	0.55424	49.699	49.456	50.01	0.076607	0.018613	0.00048108	NaN	2.084	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224440	+		10386	9501	6825	6877							0.07864100689107545
LELNRNHR	8	Unmodified	_LELNRNHR_					0	0	0		ENSG00000215475|ENST00000400405|SIAH3	ENSG00000215475|ENST00000400405|SIAH3	ENSG00000215475|ENST00000400405|SIAH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.8076171875	2	526.291414	1050.56827	-0.1479	-7.7839E-05	3.1513	0.0016585	3.0034	0.0015806	526.2928045894747	30.905	0.19871	30.905	30.779	30.978	0					13	9	2	0	0	0	0.53858	1	4561	4561		2.3027	0	1	13476			10387	5579	6826	6878	14417	14417					0.04501315000402428
LELSPGTSVAA	11	Unmodified	_LELSPGTSVAA_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7953491210938	2	522.782222	1043.54989	-0.091811	-4.7997E-05	0.035817	1.8724E-05	-0.055994	-2.9272E-05	522.7821676302326	33.025	0.91824	33.025	32.63	33.548	0					81	37	4	0	0	0	0.39744	1	5152	5152		4.897	0.70751	1	204220	+		10388	9657	6827	6879	14418	14418					0.029857155152058112
LELSTGTE	8	Unmodified	_LELSTGTE_					0	0	0			REV__ENST00000287169.7_1_11:57439559-57439610:+|nuORF	REV__ENST00000287169.7_1_11:57439559-57439610:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.2147216796875	2	425.21364	848.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.535	1	88.565	88.065	89.065	0.030037								0	0	0	0.38822	1	21897	21897		2.3027	0	1		+		10389	11307	6828	6880	14419	14419					-0.017541933643542507
LELYEELF	8	Unmodified	_LELYEELF_					0	0	0			REV__tr|U7SSR5|U7SSR5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01545PE=4SV=1	REV__tr|U7SSR5|U7SSR5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01545PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7716674804688	2	528.268416	1054.52228	0.47531	0.00025109	1.9822	0.0010471	2.4575	0.0012982	528.7711811716065	81.457	0.61835	81.478	81.228	81.846	0.021866					57	22	4	0	0	0	0.49441	1	19720	19720		13.508	0	1	272180	+		10390	13157	6829	6881	14420	14420					-0.002801877450565371
LEMDHEPLI	9	Unmodified	_LEMDHEPLI_					0	0	0			REV__ENSG00000156414|ENST00000409874|TDRD9	REV__ENSG00000156414|ENST00000409874|TDRD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2725219726562	2	548.7708	1095.52705	0.31866	0.00017487	0.020934	1.1488E-05	0.3396	0.00018636	548.7709830032721	95.478	0.65921	95.516	95.216	95.876	0.038864					68	29	3	0	0	0	0.18364	1	24078	24078		20.454	5.6154	1	413730	+		10391	9755	6830	6882	14421	14421					-0.016896268739174047
LEMEKRERR	9	Unmodified	_LEMEKRERR_					0	0	0		nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;ENST00000547253.5_1_12:80169711-80175651:-|nuORF;ENST00000465284.5_1_1:202536573-202549685:+|nuORF;ENST00000550903.5_1_12:80169711-80183436:-|nuORF;nc|ENSG00000077157|O60237-4|PPP1R12B;nc|ENSG00000077157|O60237-3|PPP1R12B;nc|ENSG00000058272|O14974-5|PPP1R12A;ENSG00000077157|ENST00000608999|PPP1R12B;nc|ENSG00000077157|O60237-6|PPP1R12B	nc|ENSG00000058272|O14974-4|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2270202636719	3	416.227673	1245.66119	0.027278	1.1354E-05	0.44243	0.00018415	0.4697	0.0001955	416.227776620968	49.53	1.395	49.607	49.404	50.799	0.076603					70	49	3	0	0	0	0.25899	1	10207	10207		2.086	0	1	112960			10392	627	6831	6883	14422	14422					0.04818451671485491
LEMERLHYI	9	Unmodified	_LEMERLHYI_					0	0	0		ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87750244140625	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.81	1	28.81	28.31	29.31	0								0	0	0	0.2699	1	3949	3949		2.9952	0.26005	1				10393	1667	6832	6884	14423	14423					0.01857743662685607
LEMERLHYI	9	Unmodified	_LEMERLHYI_					0	0	0		ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778381347656	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.89	1	28.968	28.468	29.468	0.078287								0	0	0	0.28409	1	3846	3846		1.1933	0.23107	1				10394	1667	6832	6884	14424	14424					0.01857743662685607
LEMHICWF	8	Unmodified	_LEMHICWF_					0	0	0		ENST00000529637.5_1_1:22055191-22056289:-|nuORF	ENST00000529637.5_1_1:22055191-22056289:-|nuORF	ENST00000529637.5_1_1:22055191-22056289:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7467651367188	2	539.746073	1077.47759	0.67782	0.00036585	0.84533	0.00045626	1.5232	0.00082211	539.7463712657577	93.026	0.67374	93.064	92.837	93.511	0.037369					75	28	4	0	0	0	0.46036	1	23284	23284		18.135	18.135	1	454040			10395	7020	6833	6885	14425	14425					-0.058046133637390085
LENEQHLI	8	Unmodified	_LENEQHLI_					0	0	0			REV__ENST00000514473.2_1_14:22849323-22849389:-|nuORF	REV__ENST00000514473.2_1_14:22849323-22849389:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.27972412109375	2	498.261456	994.50836	0.25527	0.00012719	-0.19535	-9.7337E-05	0.059917	2.9854E-05	498.26361249173414	49.178	0.39506	49.178	48.945	49.34	0					25	13	3	0	0	0	0.48651	1	10044	10044		14.582	2.0501	1	44021	+		10396	12274	6834	6886	14426	14426					0.01088579546535584
LENKPVDFFE	10	Unmodified	_LENKPVDFFE_					0	0	0		nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF;ENSG00000163867|ENST00000357182|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.2579345703125	2	619.308603	1236.60265	0.37159	0.00023013	-2.1783	-0.0013491	-1.8067	-0.0011189	619.3072441990042	67.234	0.80675	67.299	66.923	67.73	0.065063					40	27	2	0	0	0	0.31731	1	15522	15522		6.2058	0.9089	1	163800			10397	3952	6835	6887	14427	14427					-0.006183264219998819
LENKPVDFFE	10	Unmodified	_LENKPVDFFE_					0	0	0		nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF;ENSG00000163867|ENST00000357182|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	619.308603	1236.60265	0.12476	7.7263E-05	-1.6458	-0.0010192	-1.521	-0.00094197	619.809233574588	67.146	0.82507	67.146	66.9	67.725	0	-0.076935	0.00027807	NaN	6.2058	47	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193790			10398	3952	6835	6887							-0.006183264219998819
LEPAAQGSLL	10	Unmodified	_LEPAAQGSLL_					0	0	0		ENST00000407627.6_1_19:8025016-8025118:-|nuORF	ENST00000407627.6_1_19:8025016-8025118:-|nuORF	ENST00000407627.6_1_19:8025016-8025118:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7798767089844	2	499.779482	997.544411	0.69963	0.00034966	-0.26564	-0.00013276	0.43399	0.0002169	499.77926346067494	65.555	0.53467	65.555	65.344	65.879	0					48	19	3	0	0	0	0.42901	1	15148	15148		8.7454	0	1	478700			10399	6384	6836	6888	14428	14428					0.04554036723379795
LEPLEFDFW	9	Unmodified	_LEPLEFDFW_					0	0	0		ENST00000520999.6_1_11:44881945-44919311:+|nuORF;ENST00000533080.5_1_11:44881945-44940814:+|nuORF;ENST00000533786.5_1_11:44881945-44931425:+|nuORF	ENST00000520999.6_1_11:44881945-44919311:+|nuORF	ENST00000520999.6_1_11:44881945-44919311:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8563232421875	2	598.28714	1194.55973	0.107	6.4017E-05	-0.54574	-0.00032651	-0.43874	-0.00026249	598.7885375274152	86.553	0.37628	86.553	86.263	86.639	0					21	13	2	0	0	0	0.2298	1	21405	21405		7.2892	0	1	140440			10400	6958	6837	6889	14429	14429					-0.02977096479435204
LEPLNEGF	8	Unmodified	_LEPLNEGF_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.5209045410156	2	459.732	917.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.503	1	91.539	91.039	92.039	0.035446								0	0	0	0.38822	1	22802	22802		5.2307	0	1				10401	1378	6838	6890	14430	14430					-0.0125789674779071
LEPSKSYDIS	10	Unmodified	_LEPSKSYDIS_					0	0	0			REV__tr|U7T141|U7T141_FUSNUFurfamilytranscriptionalregulator,ferricuptakeregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00682PE=3SV=1	REV__tr|U7T141|U7T141_FUSNUFurfamilytranscriptionalregulator,ferricuptakeregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00682PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.784912109375	2	569.784961	1137.55537	-0.043187	-2.4607E-05	-0.16295	-9.2845E-05	-0.20613	-0.00011745	569.7849526371934	40.013	0.37856	40.102	39.905	40.284	0.088562					20	14	2	0	0	0	0.45794	1	7169	7169		3.2813	0	1	53924	+		10402	13252	6839	6891	14431	14431					-0.00790605692986901
LEPSSPPTLS	10	Unmodified	_LEPSSPPTLS_					0	0	0			REV__nc|ENSG00000118263|O75840-3|KLF7	REV__nc|ENSG00000118263|O75840-3|KLF7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7908325195312	2	514.268947	1026.52334	0.63368	0.00032588	2.174	0.001118	2.8077	0.0014439	514.2700600717286	54.574	0.69566	54.64	54.466	55.161	0.065128					43	34	2	0	0	0	0.31456	1	11689	11689		6.2058	0	1	150400	+		10403	8839	6840	6892	14432	14432					0.011140266238726326
LEPYYAVIPC	10	Unmodified	_LEPYYAVIPC_					0	0	0			REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7930297851562	2	584.291368	1166.56818	0.57803	0.00033774	-0.6434	-0.00037593	-0.065367	-3.8193E-05	584.7924854507298	96.452	0.51807	96.452	96.332	96.851	0					32	23	2	0	0	0	0.43972	1	24468	24468		6.7232	0.51738	1	147080	+		10404	13082	6841	6893	14433	14433					-0.008438658344402938
LEQALEQF	8	Unmodified	_LEQALEQF_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-12|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;ENST00000471834.1_1_6:152690575-152702320:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2505798339844	2	489.250557	976.486562	0.45335	0.0002218	-0.037411	-1.8303E-05	0.41594	0.0002035	489.2505659786656	98.276	0.36685	98.318	98.064	98.431	0.041939					38	18	3	0	0	0	0.51415	1	24843	24843		10.824	0	1	69252			10405	2508	6842	6894	14434	14434					-0.002622252020501037
LEQFPTVL	8	Unmodified	_LEQFPTVL_					0	0	0		ENST00000530891.3_1_15:85175130-85175559:+|nuORF;nc|ENSG00000176700|Q9GZW5-2|SCAND2P;ENST00000348993.9_1_15:85175130-85180634:+|nuORF;ENST00000427525.2_1_15:85175388-85177573:+|nuORF;nc|ENSG00000176700|Q9GZW5|SCAND2P	ENST00000530891.3_1_15:85175130-85175559:+|nuORF	ENST00000530891.3_1_15:85175130-85175559:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7658386230469	2	473.765843	945.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81	1	81	80.5	81.5	0								0	0	0	0.38822	1	19768	19768		4.3292	0	1				10406	6106	6843	6895	14435	14435					0.04219553183008884
LEQKRILYEA	10	Unmodified	_LEQKRILYEA_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5752258300781	3	421.574955	1261.70304	0.36004	0.00015178	0.66082	0.00027859	1.0209	0.00043037	421.57519115652127	36.047	1.628	36.047	35.765	37.393	0					148	63	3	0	0	0	0.47199	1	6367	6367		0.62683	0	1	90538	+		10407	9657	6844	6896	14436	14436					0.08265330631684265
LEQVAQRT	8	Unmodified	_LEQVAQRT_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.7608947753906	2	472.761623	943.508694	-0.41215	-0.00019485	0.17148	8.1067E-05	-0.24068	-0.00011378	472.7616979303931	26.179	0.39041	26.179	26.054	26.445	0					42	33	2	0	0	0	0.53926	1	3177	3177		1.8442	0.36234	1	23337	+		10408	8624	6845	6897	14437	14437					0.03467999266388233
LEQVAQRT	8	Unmodified	_LEQVAQRT_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	472.761623	943.508694	-0.41215	-0.00019485	0.17148	8.1067E-05	-0.24068	-0.00011378	472.7616979303931	26.179	0.39041	26.179	26.054	26.445	0	0.010908	-5.2592E-05	NaN	1.8442	42	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23337	+		10409	8624	6845	6897							0.03467999266388233
LEQVAQRT	8	Unmodified	_LEQVAQRT_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	472.761623	943.508694	-0.35883	-0.00016964	0.33163	0.00015678	-0.027201	-1.286E-05	472.7617403324279	26.066	0.3666	26.157	26.017	26.383	0.091507	-0.010908	9.8839E-05	NaN	1.8442	41	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17805	+		10410	8624	6845	6897							0.03467999266388233
LERCDIFTI	9	Unmodified	_LERCDIFTI_					0	0	0		chr12:111943369-111975028|111|10.31|0.05|7.75|-|2|TE_info:L1M4,L1M4_dup15030,L1,LINE,donor,+,111975028,111975155|TMEM116,None|1	chr12:111943369-111975028|111|10.31|0.05|7.75|-|2|TE_info:L1M4,L1M4_dup15030,L1,LINE,donor,+,111975028,111975155|TMEM116,None|1	chr12:111943369-111975028|111|10.31|0.05|7.75|-|2|TE_info:L1M4,L1M4_dup15030,L1,LINE,donor,+,111975028,111975155|TMEM116,None|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7886962890625	2	555.286617	1108.55868	0.54693	0.0003037	0.42102	0.00023378	0.96795	0.00053749	555.2867964224724	100.72	0.82805	100.72	100.53	101.36	0					103	48	3	0	0	0	0.14444	1	25732	25732		24.991	0.97039	1	537920			10411	145	6846	6898	14438	14438					0.008743658800312915
LERGTRPH	8	Unmodified	_LERGTRPH_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.8778991699219	2	483.267407	964.520262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.948	1	47.948	47.448	48.448	0								0	0	0	0.38822	1	9692	9692		4.3292	0	1				10412	3775	6847	6899	14439	14439					0.036582410803816856
LERPGYPECF	10	Unmodified	_LERPGYPECF_					0	0	0			REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.19061279296875	3	404.190225	1209.54884	-0.0097572	-3.9438E-06	1.7557	0.00070964	1.746	0.0007057	404.1909289702221	24.623	0.25685	24.623	24.494	24.751	0					31	18	2	0	0	0	0.47161	1	2748	2748		0.69767	0.07084	1	11014	+		10413	10789	6848	6900	14440	14440					-0.04754822125346436
LERPGYPECF	10	Unmodified	_LERPGYPECF_					0	0	0			REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	404.190225	1209.54884	-0.22484	-9.0879E-05	2.2741	0.00091917	2.0493	0.00082829	404.5254471938545	24.464	0.20027	24.56	24.489	24.689	0.096073	-0.03144	0.00019415	NaN	0.69767	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9672.7	+		10414	10789	6848	6900							-0.04754822125346436
LERPLELRVK	10	Unmodified	_LERPLELRVK_					0	0	0		ENSG00000175065|ENST00000308128|DSG4;nc|ENSG00000175065|Q86SJ6-2|DSG4	ENSG00000175065|ENST00000308128|DSG4	ENSG00000175065|ENST00000308128|DSG4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8900146484375	2	626.890429	1251.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.58	1	114.58	114.08	115.08	0								0	0	0	0.33892	1	29260	29260		1.4819	0	1				10415	4607	6849	6901	14441	14441					0.15049316139516122
LERQEDLE	8	Unmodified	_LERQEDLE_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000473861.1_1_10:128908515-128926040:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2540893554688	2	516.253828	1030.4931	-0.14399	-7.4336E-05	0.95239	0.00049168	0.8084	0.00041734	516.2542084327889	25.308	0.4334	25.308	25.153	25.587	0					64	34	3	0	0	0	0.53494	1	2958	2958		4.756	0	1	56390			10416	3437	6850	6902	14442	14442					-0.020923320413203328
LERQEDLE	8	Unmodified	_LERQEDLE_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000473861.1_1_10:128908515-128926040:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	516.253828	1030.4931	-0.14399	-7.4336E-05	0.95239	0.00049168	0.8084	0.00041734	516.2542084327889	25.308	0.4334	25.308	25.153	25.587	0	0.020802	6.9759E-05	NaN	4.756	64	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56390			10417	3437	6850	6902							-0.020923320413203328
LERRHKEPL	9	Unmodified	_LERRHKEPL_					0	0	0			REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3436889648438	2	589.343646	1176.67274	0.37763	0.00022255	-0.95867	-0.00056499	-0.58104	-0.00034243	589.3428747495698	90.395	0.66033	90.395	90.048	90.708	0					59	26	3	0	0	0	0.32112	1	22527	22527		3.9444	0.3479	1	300440	+		10418	11164	6851	6903	14443	14443					0.09147016757151505
LERYLMQEL	9	Unmodified	_LERYLMQEL_					0	0	0			REV__nc|ENSG00000183837|Q9UL41-2|PNMA3	REV__nc|ENSG00000183837|Q9UL41-2|PNMA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8129272460938	2	597.812999	1193.61144	-0.035588	-2.1275E-05	0.29847	0.00017843	0.26288	0.00015716	597.8132154564382	34.457	1.0505	34.533	34.249	35.3	0.076244					156	44	5	0	0	0	0.32614	1	5717	5717		3.2813	0	1	1792100	+		10419	10613	6852	6904	14444	14444					0.02238323942833631
LERYVASLMP	10	Unmodified	_LERYVASLMP_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8155517578125	2	589.815541	1177.61653	-0.20419	-0.00012044	-0.32486	-0.00019161	-0.52906	-0.00031205	589.8153377219525	41.728	1.5607	41.818	41.556	43.116	0.089764					149	60	4	0	0	0	0.40359	1	7770	7770		11.495	0	1	966750			10420	4600	6853	6905	14445	14445					0.03482627805442462
LESEQKQQF	9	Unmodified	_LESEQKQQF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.781494140625	2	568.782753	1135.55095	-0.19141	-0.00010887	-0.4514	-0.00025675	-0.64281	-0.00036562	568.78237515558	28.306	0.34475	28.306	28.119	28.463	0					29	18	2	0	0	0	0.26705	2	3789	3789;3804		10.8	5.5026	1	51975			10421	3951	6854	6906	14446;14447	14446					-0.011400701159118398
LESEQKQQF	9	Unmodified	_LESEQKQQF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7819213867188	2	568.782753	1135.55095	-0.15581	-8.8621E-05	-0.85791	-0.00048796	-1.0137	-0.00057658	568.7821992397854	28.225	0.31184	28.307	28.141	28.453	0.082132					26	19	2	0	0	0	0.2546	1	3643	3643		12.241	0	1	52063			10422	3951	6854	6906	14448	14448					-0.011400701159118398
LESLKQLHEF	10	Unmodified	_LESLKQLHEF_					0	0	0		ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.2275085449219	3	415.227556	1242.66084	-0.10298	-4.276E-05	-0.01028	-4.2687E-06	-0.11326	-4.7028E-05	415.2273783358023	46.055	0.38398	46.141	46.009	46.393	0.085617					30	13	3	0	0	0	0.31837	1	9017	9017		1.9064	0.1641	1	82240			10423	2899	6855	6907	14449	14449					0.0492135522326862
LESLKQLHEF	10	Unmodified	_LESLKQLHEF_					0	0	0		ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	415.227556	1242.66084	0.20816	8.6433E-05	-0.74653	-0.00030998	-0.53838	-0.00022355	415.2270928322791	46.161	0.4286	46.161	45.955	46.384	0	0.0099691	-0.00058296	NaN	1.9064	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84235			10424	2899	6855	6907							0.0492135522326862
LESQDSGYL	9	Unmodified	_LESQDSGYL_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2340393066406	2	506.235104	1010.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.464	1	58.535	58.035	59.035	0.070477								0	0	0	0.24978	1	12755	12755		9.3831	0.035688	1				10425	2161	6856	6908	14450	14450					-0.04915423306931643
LESQMMMC	8	Unmodified	_LESQMMMC_					0	0	0			REV__ENST00000422717.1_1_9:32333457-32333676:-|nuORF	REV__ENST00000422717.1_1_9:32333457-32333676:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.68603515625	2	486.686509	971.358466	-0.24718	-0.0001203	0.092725	4.5128E-05	-0.15446	-7.5171E-05	486.68655444342187	32.757	0.27283	32.831	32.692	32.965	0.07378					18	12	2	0	0	0	0.54081	1	4998	4998		0.79363	0.10326	1	20702	+		10426	11817	6857	6909	14451	14451					-0.1283589137508443
LESRSHHLLGL	11	Unmodified	_LESRSHHLLGL_					0	0	0		nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2	nc|ENSG00000095383|Q9BYX2-6|TBC1D2	nc|ENSG00000095383|Q9BYX2-6|TBC1D2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.2241516113281	3	421.238566	1260.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.586	1	52.586	52.086	53.086	0								0	0	0	0.32091	1	11099	11099		7.4771	0	1				10427	1099	6858	6910	14452	14452					0.07394982065989097
LESTDYWL	8	Unmodified	_LESTDYWL_					0	0	0		ENSG00000153820|ENST00000392056|SPHKAP;nc|ENSG00000153820|Q2M3C7-2|SPHKAP;SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant	ENSG00000153820|ENST00000392056|SPHKAP	ENSG00000153820|ENST00000392056|SPHKAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2906494140625	2	513.742565	1025.47058	0.047373	2.4338E-05	1.8056	0.00092763	1.853	0.00095197	513.7431616695549	33.774	0.098309	33.849	33.765	33.863	0.074322					5	4	2	0	0	0	0.3576	1	5292	5292		0.79363	0	1	8629.2			10428	3532	6859	6911	14453	14453					-0.04113931438951113
LESWVLFDTW	10	Unmodified	_LESWVLFDTW_					0	0	0			REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF	REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.319580078125	2	648.318971	1294.62339	0.45078	0.00029225	1.9833	0.0012858	2.4341	0.0015781	648.3190979605052	93.918	0.53682	93.918	93.658	94.195	0					59	26	3	0	0	0	0.27354	2	23698	23698;23715		25.399	1.6095	1	745280	+		10429	11977	6860	6912	14454;14455	14454					-0.012137360423366772
LESWVLFDTW	10	Unmodified	_LESWVLFDTW_					0	0	0			REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF	REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.8203125	2	648.318971	1294.62339	0.27248	0.00017665	0.26697	0.00017308	0.53945	0.00034973	648.3188775973114	93.853	0.55154	93.891	93.675	94.227	0.038086					50	26	2	0	0	0	0.24016	3	23497	23497;23539;23565		29.082	8.667	1	613080	+		10430	11977	6860	6912	14456;14457;14458	14456					-0.012137360423366772
LESWVLFDTW	10	Unmodified	_LESWVLFDTW_					0	0	0			REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF	REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.8203125	2	648.318971	1294.62339	0.27248	0.00017665	0.26697	0.00017308	0.53945	0.00034973	648.3188775973114	93.853	0.55154	93.891	93.675	94.227	0.038086					50	26	2	0	0	0	0.2803	1	23497	23497		29.082	8.667	1	613080	+		10431	11977	6860	6912	14459	14459					-0.012137360423366772
LETISHTLQ	9	Unmodified	_LETISHTLQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2823486328125	2	521.282389	1040.55022	-0.069641	-3.6303E-05	0.22576	0.00011769	0.15612	8.1383E-05	521.2824329309691	43.47	0.45729	43.559	43.361	43.818	0.088921					36	16	3	0	0	0	0.27929	1	8251	8251		9.3831	0.035688	1	149810	+		10432	10526	6861	6913	14460	14460					0.031571352350511006
LETLAQMDDL	10	Unmodified	_LETLAQMDDL_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.2918701171875	2	574.778822	1147.54309	-0.1014	-5.8281E-05	1.4295	0.00082165	1.3281	0.00076337	574.7795816016071	33.044	0.57367	33.044	32.675	33.248	0					53	23	3	0	0	0	0.43972	1	5248	5248		6.7232	0.51738	1	51771			10433	3468	6862	6914	14461	14461					-0.02477965427692652
LETLEPWVQ	9	Unmodified	_LETLEPWVQ_					0	0	0			REV__ENST00000486228.7_1_9:90582379-90585754:-|nuORF	REV__ENST00000486228.7_1_9:90582379-90585754:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7837524414062	2	557.792589	1113.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.217	1	61.29	60.79	61.79	0.073421								0	0	0	0.21527	1	13590	13590		15.847	1.9411	1		+		10434	9753	6863	6915	14462	14462					0.01838305894852965
LETLYLLSDP	10	Unmodified	_LETLYLLSDP_					0	0	0		tr|U7T3A0|U7T3A0_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00554PE=3SV=1	tr|U7T3A0|U7T3A0_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00554PE=3SV=1	tr|U7T3A0|U7T3A0_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00554PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.8108520507812	2	582.313354	1162.61216	0.60224	0.00035069	-1.1917	-0.00069396	-0.58949	-0.00034327	582.3128525107342	104.15	0.10055	104.19	104.18	104.28	0.03791					13	8	2	0	0	0	0.31834	1	26623	26623		1.6526	0.17072	1	138510			10435	13702	6864	6916	14463	14463					0.03735441863523192
LEVFDGRD	8	Unmodified	_LEVFDGRD_					0	0	0		ENST00000354870.5_1_8:22035226-22069238:+|nuORF;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENSG00000168487|ENST00000306385|BMP1;ENST00000520626.5_1_8:22059101-22069238:+|nuORF;ENST00000520970.5_1_8:22058712-22069238:+|nuORF	ENST00000354870.5_1_8:22035226-22069238:+|nuORF	ENST00000354870.5_1_8:22035226-22069238:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.732421875	2	475.732532	949.45051	0.040426	1.9232E-05	0.44149	0.00021003	0.48192	0.00022926	475.73262954453565	37.793	0.94386	37.877	37.541	38.485	0.084476					63	33	3	0	0	0	0.53817	1	6541	6541		2.5775	2.5775	1	103180			10436	4294	6865	6917	14464	14464					-0.026236823788963193
LEVKESNLDF	10	Unmodified	_LEVKESNLDF_					0	0	0			REV__tr|U7SLA8|U7SLA8_FUSNUUDP-N-acetyl-D-galactosaminedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01952PE=3SV=1	REV__tr|U7SLA8|U7SLA8_FUSNUUDP-N-acetyl-D-galactosaminedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01952PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7951049804688	2	597.306061	1192.59757	0.36611	0.00021868	1.6369	0.00097776	2.0031	0.0011964	597.3077331703211	68.666	0.16243	68.666	68.558	68.72	0					7	5	2	0	0	0	0.31712	1	15976	15976		6.7232	1.4263	1	44054	+		10437	13072	6866	6918	14465	14465					0.008973697153805915
LEVMFVFP	8	Unmodified	_LEVMFVFP_					0	0	0			REV__ENST00000599227.5_2_19:58772663-58772768:+|nuORF	REV__ENST00000599227.5_2_19:58772663-58772768:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.25921630859375	2	491.259339	980.504126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.504	1	26.595	26.095	27.095	0.091507								0	0	0	0.38822	1	3150	3150		0.69038	0	1		+		10438	12617	6867	6919	14466	14466					0.013093987992647271
LEVPDMNI	8	Unmodified	_LEVPDMNI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7334899902344	2	465.733686	929.452819	0.11789	5.4907E-05	0.02217	1.0325E-05	0.14006	6.5232E-05	465.7335593733963	78.775	1.0211	78.805	78.476	79.497	0.030159					83	35	4	0	0	0	0.43379	1	19050	19050		21.747	3.6117	1	977700			10439	2279	6868	6920	14467	14467					-0.014729699654594697
LEVPDMNI	8	Unmodified	_LEVPDMNI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.73370361328125	2	465.733686	929.452819	0.38411	0.00017889	0.025139	1.1708E-05	0.40925	0.0001906	465.7335654848607	80.187	0.79756	80.211	79.881	80.679	0.023605					46	28	2	0	0	0	0.4772	1	19388	19388		15.847	1.2655	1	119590			10440	2279	6868	6920	14468	14468					-0.014729699654594697
LEVPDMNI	8	Unmodified	_LEVPDMNI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	465.733686	929.452819	0.79894	0.00037209	-0.52248	-0.00024334	0.27646	0.00012875	465.7333779036595	80.086	0.7019	80.086	79.869	80.571	0	-0.062429	-0.00018819	NaN	15.847	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142170			10441	2279	6868	6920							-0.014729699654594697
LEVTQQPV	8	Unmodified	_LEVTQQPV_					0	0	0		nc|ENSG00000101307|Q5TFQ8|SIRPB1;nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	nc|ENSG00000101307|Q5TFQ8|SIRPB1	nc|ENSG00000101307|Q5TFQ8|SIRPB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.86468505859375	2	457.2531	912.491647	-0.20336	-9.2986E-05	0.64275	0.0002939	0.43939	0.00020091	457.2531809693098	28.966	0.3007	29.044	28.912	29.212	0.078287					32	21	2	0	0	0	0.3576	1	3864	3864		2.0598	0	1	16159			10442	5340	6869	6921	14469	14469					0.031900786605774556
LEVYEMWRN	9	Unmodified	_LEVYEMWRN_					0	0	0		ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.2955322265625	2	620.294973	1238.57539	0.050977	3.1621E-05	0.4344	0.00026946	0.48538	0.00030108	620.295431651611	78.717	0.86219	78.748	78.476	79.338	0.030159					61	29	3	0	0	0	0.27332	1	18901	18901		10.074	0.6908	1	979430			10443	2604	6870	6922	14470	14470					-0.034351332340293084
LEWGGQDEL	9	Unmodified	_LEWGGQDEL_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.79736328125	2	523.743096	1045.47164	0.1866	9.7729E-05	-0.085596	-4.483E-05	0.101	5.2898E-05	523.7430244076324	50.822	0.47153	50.892	50.738	51.21	0.069874					38	17	3	0	0	0	0.25259	1	10488	10488		7.609	2.8529	1	130150	+		10444	10629	6871	6923	14471	14471					-0.049277170700406714
LEWIFSKIK	9	Unmodified	_LEWIFSKIK_					0	0	0			REV__nc|ENSG00000124177|Q8TD26-3|CHD6	REV__nc|ENSG00000124177|Q8TD26-3|CHD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.344970703125	2	582.344792	1162.67503	0.11554	6.7286E-05	0.19231	0.00011199	0.30786	0.00017928	582.3449063410798	58.556	2.5844	58.556	58.386	60.971	0					182	95	5	0	0	0	0.20358	1	13145	13145		18.146	18.146	1	9569000	+		10445	8947	6872	6924	14472	14472					0.1002005244222346
LEWIFSKIK	9	Unmodified	_LEWIFSKIK_					0	0	0			REV__nc|ENSG00000124177|Q8TD26-3|CHD6	REV__nc|ENSG00000124177|Q8TD26-3|CHD6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	582.344792	1162.67503	0.11554	6.7286E-05	0.19231	0.00011199	0.30786	0.00017928	582.3449063410798	58.556	2.5844	58.556	58.386	60.971	0	0.018728	0.0002282	NaN	18.146	182	95	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9569000	+		10446	8947	6872	6924							0.1002005244222346
LEWIFSKIK	9	Unmodified	_LEWIFSKIK_					0	0	0			REV__nc|ENSG00000124177|Q8TD26-3|CHD6	REV__nc|ENSG00000124177|Q8TD26-3|CHD6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	582.344792	1162.67503	0.44511	0.00025921	-0.11049	-6.4343E-05	0.33463	0.00019487	582.3447370291939	58.448	2.2536	58.518	58.348	60.602	0.070477	-0.018728	-0.00012447	NaN	18.146	190	84	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9282600	+		10447	8947	6872	6924							0.1002005244222346
LEWLVTAPF	9	Unmodified	_LEWLVTAPF_					0	0	0			REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.294189453125	2	538.294768	1074.57498	0.38678	0.0002082	-0.48649	-0.00026188	-0.099715	-5.3676E-05	538.294436574726	94.825	1.0341	94.825	94.371	95.405	0					77	43	2	0	0	0	0.21398	1	23870	23870		16.942	2.104	1	791380	+		10448	9725	6873	6925	14473	14473					0.04067815108442119
LEWLVTAPF	9	Unmodified	_LEWLVTAPF_					0	0	0			REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2938842773438	2	538.294768	1074.57498	0.45575	0.00024533	-0.66671	-0.00035889	-0.21095	-0.00011356	538.2943262940418	94.865	0.99236	94.904	94.371	95.364	0.038872					73	40	2	0	0	0	0.21398	1	23708	23708		16.942	2.104	1	557530	+		10449	9725	6873	6925	14474	14474					0.04067815108442119
LEWTISITW	9	Unmodified	_LEWTISITW_					0	0	0			REV__PTDSS1|p.T304Pfs*4|1|0.43|ENSG00000156471|chr8:96306459-96306459|A/-|frameshift_variant	REV__PTDSS1|p.T304Pfs*4|1|0.43|ENSG00000156471|chr8:96306459-96306459|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2692260742188	2	574.802957	1147.59136	0.35159	0.00020209	-0.11715	-6.7336E-05	0.23444	0.00013476	574.8027014349241	91.102	0.64835	91.102	90.858	91.507	0					50	22	3	0	0	0	0.20845	1	22843	22843		21.747	9.506	1	715530	+		10450	9756	6874	6926	14475	14475					0.02346896274525534
LEWTISITW	9	Unmodified	_LEWTISITW_					0	0	0			REV__PTDSS1|p.T304Pfs*4|1|0.43|ENSG00000156471|chr8:96306459-96306459|A/-|frameshift_variant	REV__PTDSS1|p.T304Pfs*4|1|0.43|ENSG00000156471|chr8:96306459-96306459|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2688598632812	2	574.802957	1147.59136	0.12784	7.348E-05	0.068614	3.9439E-05	0.19645	0.00011292	574.8028171074878	91.068	0.63574	91.104	90.828	91.464	0.035446					55	22	3	0	0	0	0.2298	1	22688	22688		16.942	3.0362	1	545850	+		10451	9756	6874	6926	14476	14476					0.02346896274525534
LEYLVIGF	8	Unmodified	_LEYLVIGF_					0	0	0			REV__ENST00000445336.2_1_X:74804463-74804925:+|nuORF	REV__ENST00000445336.2_1_X:74804463-74804925:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2690734863281	2	477.270761	952.52697	0.19097	9.1144E-05	-3.7669	-0.0017978	-3.576	-0.0017067	477.2690242462645	74.757	0.3	74.757	74.635	74.935	0					12	10	2	0	0	0	0.53423	1	17879	17879		5.2307	0	1	55612	+		10452	9786	6875	6927	14477	14477					0.04880741188378579
LFACAILDNF	10	Unmodified	_LFACAILDNF_					0	0	0			REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2	REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2753295898438	2	563.78371	1125.55287	0.32634	0.00018398	-1.8873	-0.001064	-1.5609	-0.00088003	563.7823462366855	87.452	0.56384	87.452	87.291	87.855	0					42	20	4	0	0	0	0.31456	1	21847	21847		10.074	0	1	454510	+		10453	9386	6876	6928	14478	14478					-0.004887326316520557
LFACPTFILF	10	Unmodified	_LFACPTFILF_					0	0	0			REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8135375976562	2	586.314646	1170.61474	0.86195	0.00050537	-1.2017	-0.00070458	-0.33977	-0.00019921	586.3138551593386	84.029	0.6922	84.029	83.55	84.242	0					43	23	2	0	0	0	0.31288	1	20592	20592		15.847	15.847	1	259410	+		10454	9373	6877	6929	14479	14479					0.03625618787464191
LFADLNIRS	9	Unmodified	_LFADLNIRS_					0	0	0			REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF	REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7925415039062	2	524.792924	1047.57129	0.14154	7.428E-05	0.30739	0.00016132	0.44893	0.0002356	524.7928252328683	51.239	0.3864	51.239	51.062	51.448	0					22	12	2	0	0	0	0.098463	2	10693	10693;10725		32.786	8.7651	1	132630	+		10455	12115	6878	6930	14480;14481	14480					0.04941145334532848
LFADLNIRS	9	Unmodified	_LFADLNIRS_					0	0	0			REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF	REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7926025390625	2	524.792924	1047.57129	0.16402	8.6074E-05	-0.232	-0.00012175	-0.06798	-3.5675E-05	524.7927112088914	51.151	0.37063	51.221	51.105	51.475	0.069874					25	14	3	0	0	0	0.13341	2	10542	10542;10580		26.268	4.5215	1	96136	+		10456	12115	6878	6930	14482;14483	14482					0.04941145334532848
LFADLNIRS	9	Unmodified	_LFADLNIRS_					0	0	0			REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF	REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	524.792924	1047.57129	0.14154	7.428E-05	0.30739	0.00016132	0.44893	0.0002356	524.7928252328683	51.239	0.3864	51.239	51.062	51.448	0	0.009149	0.00043915	NaN	32.786	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132630	+		10457	12115	6878	6930							0.04941145334532848
LFAETFKRHLI	11	Unmodified	_LFAETFKRHLI_					0	0	0		ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.93499755859375	3	458.934595	1373.78196	0.41309	0.00018958	-0.2432	-0.00011161	0.16989	7.797E-05	458.9344269517287	47.784	2.2507	47.784	47.144	49.394	0					170	77	3	0	0	0	0.37201	1	9647	9647		9.7643	3.1408	1	202680			10458	6993	6879	6931	14484	14484					0.11001602656597242
LFAETFKRHLI	11	Unmodified	_LFAETFKRHLI_					0	0	0		ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.93463134765625	3	458.934595	1373.78196	0.31171	0.00014305	-0.26667	-0.00012238	0.045041	2.0671E-05	458.934449187986	47.297	1.961	47.38	46.855	48.816	0.083092					195	72	4	0	0	0	0.35054	2	9346	9302;9346		12.228	1.4778	1	370830			10459	6993	6879	6931	14485;14486	14486					0.11001602656597242
LFALIVPTL	9	Unmodified	_LFALIVPTL_					0	0	0			REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81781005859375	2	493.817879	985.621205	0.40474	0.00019987	0.082963	4.0969E-05	0.4877	0.00024084	493.81789689920964	102.01	0.21853	102.01	101.94	102.16	0					21	13	2	0	0	0	0.20367	1	26174	26174		18.135	0	1	640880	+		10460	12971	6880	6932	14487	14487					0.12781880010527402
LFALIVPTL	9	Unmodified	_LFALIVPTL_					0	0	0			REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8180236816406	2	493.817879	985.621205	0.3117	0.00015392	0.24145	0.00011923	0.55315	0.00027316	493.8178044579418	103.37	0.17865	103.37	103.26	103.44	0					19	12	2	0	0	0	0.25209	1	26575	26575		12.532	0	1	100660	+		10461	12971	6880	6932	14488	14488					0.12781880010527402
LFALIVPTL	9	Unmodified	_LFALIVPTL_					0	0	0			REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.3194885253906	2	493.817879	985.621205	0.29101	0.0001437	0.065014	3.2105E-05	0.35602	0.00017581	493.8178289813267	103.65	0.066101	103.65	103.62	103.69	0					10	7	2	0	0	0	0.29105	1	26650	26650		7.9102	0	1	98323	+		10462	12971	6880	6932	14489	14489					0.12781880010527402
LFALIVPTL	9	Unmodified	_LFALIVPTL_					0	0	0			REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81793212890625	2	493.817879	985.621205	0.36871	0.00018208	0.030375	1.5E-05	0.39909	0.00019708	493.8177713594421	102.68	0.30208	102.68	102.4	102.71	0					36	18	3	0	0	0	0.22289	1	26366	26366		18.135	0	1	167870	+		10463	12971	6880	6932	14490	14490					0.12781880010527402
LFALMNKRW	9	Unmodified	_LFALMNKRW_					0	0	0			REV__ENSG00000263956|ENST00000682118|NBPF11	REV__ENSG00000263956|ENST00000682118|NBPF11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8302001953125	2	589.828786	1177.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.719	1	29.795	29.295	30.295	0.075403								0	0	0	0.29233	1	4092	4092		0.6015	0	1		+		10464	11117	6881	6933	14491	14491					0.06130361487430491
LFAPPGALYA	10	Unmodified	_LFAPPGALYA_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.28204345703125	2	510.28166	1018.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.19	1	90.224	89.724	90.724	0.034065								0	0	0	0.32946	1	22404	22404		12.532	0	1				10465	2476	6882	6934	14492	14492					0.0402354593693417
LFASWDAEE	9	Unmodified	_LFASWDAEE_					0	0	0		nc|ENSG00000290503|Q9HBA9|FOLH1B;nc|ENSG00000086205|Q04609-10|FOLH1;nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;ENST00000525629.1_1_11:49184436-49197505:-|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1	nc|ENSG00000290503|Q9HBA9|FOLH1B	nc|ENSG00000290503|Q9HBA9|FOLH1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.79345703125	2	534.237647	1066.46074	0.78177	0.00041765	-0.98034	-0.00052374	-0.19857	-0.00010608	534.2370456322508	92.711	0.37282	92.747	92.552	92.925	0.03653					19	12	2	0	0	0	0.2491	1	23213	23213		8.5933	0	1	81474			10466	975	6883	6935	14493	14493					-0.06983119444339536
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2870483398438	2	537.286943	1072.55933	0.21042	0.00011306	0.14066	7.5576E-05	0.35108	0.00018863	537.2869289630461	89.632	0.68738	89.632	89.39	90.077	0					92	25	5	0	0	0	1.1935E-05	4	22407	22359;22407;22447;22488		147.06	85.702	1	3416500			10467	3254	6884	6936	14494;14495;14496;14497	14495					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.29736328125	2	537.286943	1072.55933	0.3491	0.00018757	0.0088993	4.7815E-06	0.358	0.00019235	537.2868807254849	90.598	1.0248	90.598	90.184	91.209	0					66	37	3	0	0	0	0.14331	1	22579	22579		36.127	20.28	1	235790			10468	3254	6884	6936	14498	14498					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2871704101562	2	537.286943	1072.55933	0.37303	0.00020043	-0.11367	-6.1076E-05	0.25936	0.00013935	537.2868196080856	89.65	0.65592	89.684	89.357	90.013	0.034058					84	24	4	0	0	0	1.2541E-09	4	22231	22182;22231;22278;22319		174.73	96.004	1	2994200			10469	3254	6884	6936	14499;14500;14501;14502	14500					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2974853515625	2	537.286943	1072.55933	0.27493	0.00014772	-0.017562	-9.4358E-06	0.25737	0.00013828	537.2869436236202	90.166	0.27012	90.2	90.059	90.329	0.034065					18	11	2	0	0	0	0.11896	1	22415	22415		32.305	12.866	1	193650			10470	3254	6884	6936	14503	14503					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2581176757812	2	537.286943	1072.55933	0.38445	0.00020656	2.0382	0.0010951	2.4227	0.0013017	537.2875400368803	91.176	0.64632	91.211	91.02	91.666	0.035446					34	22	3	0	0	0	0.2229	1	22669	22669		19.257	9.0736	1	65482			10471	3254	6884	6936	14504	14504					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2976684570312	2	537.286943	1072.55933	0.22181	0.00011917	0.42025	0.00022579	0.64206	0.00034497	537.2870253122427	90.559	0.72977	90.593	90.263	90.992	0.034065					70	29	3	0	0	0	0.19376	1	22465	22465		25.399	2.2509	1	350610			10472	3254	6884	6936	14505	14505					0.0259552859138239
LFCFVRRD	8	Unmodified	_LFCFVRRD_					0	0	0			REV__ENST00000455858.2_2_12:117467953-117468139:+|nuORF	REV__ENST00000455858.2_2_12:117467953-117468139:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7640991210938	2	528.276386	1054.53822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.127	1	30.127	29.627	30.627	0								0	0	0	0.38822	1	4335	4335		0.79363	0	1		+		10473	11944	6885	6937	14506	14506					0.013132400108588627
LFCFWVFF	8	Unmodified	_LFCFWVFF_					0	0	0			REV__ENST00000542104.5_2_12:65089076-65089520:+|nuORF	REV__ENST00000542104.5_2_12:65089076-65089520:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7715454101562	2	554.769874	1107.5252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.609	1	86.637	86.137	87.137	0.027573								0	0	0	0.3821	1	21316	21316		24.21	0	1		+		10474	12404	6886	6938	14507	14507					-0.024265911012207653
LFCLYVDF	8	Unmodified	_LFCLYVDF_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2485046386719	2	510.248972	1018.48339	0.079914	4.0776E-05	-1.4364	-0.00073291	-1.3565	-0.00069214	510.2482112647207	73.614	0.74017	73.614	73.313	74.053	0					41	26	2	0	0	0	0.39998	1	17594	17594		26.341	0	1	505270	+		10475	8285	6887	6939	14508	14508					-0.025111915804131968
LFCQLIWQY	9	Unmodified	_LFCQLIWQY_					0	0	0			REV__ENST00000416893.2_1_X:82253937-82254204:+|nuORF	REV__ENST00000416893.2_1_X:82253937-82254204:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.3067626953125	2	607.307352	1212.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.951	1	67.016	66.516	67.516	0.065071								0	0	0	0.2722	1	15330	15330		4.756	0	1		+		10476	11800	6888	6940	14509	14509					0.0023554663935101416
LFCVLSGLFV	10	Unmodified	_LFCVLSGLFV_					0	0	0		ENSG00000172689|ENST00000308287|MS4A10	ENSG00000172689|ENST00000308287|MS4A10	ENSG00000172689|ENST00000308287|MS4A10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.3062133789062	2	549.306821	1096.59909	-0.32201	-0.00017688	-0.28347	-0.00015571	-0.60548	-0.00033259	549.3066490635392	16.674	0.16562	16.674	16.609	16.775	0					33	20	2	0	0	0	0.46656	1	772	772		1.6526	0	1	17131			10477	4505	6889	6941	14510	14510					0.054653322704325547
LFDAVIRL	8	Unmodified	_LFDAVIRL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.78961181640625	2	473.789653	945.564752	-0.28607	-0.00013554	0.36011	0.00017062	0.074035	3.5077E-05	473.78971537579474	72.3	0.7522	72.3	72.071	72.824	0					54	25	3	0	0	0	0.01962	1	17110	17110		78.728	17.371	1	615140			10478	1712	6890	6942	14511	14511					0.08979252173844543
LFDAVIRL	8	Unmodified	_LFDAVIRL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7898254394531	2	473.789653	945.564752	-0.13938	-6.6038E-05	0.21107	0.0001	0.071684	3.3963E-05	473.7897002707025	72.22	0.72098	72.276	72.088	72.809	0.055939					52	24	3	0	0	0	0.065403	2	16918	16918;16967		60.074	16.216	1	627590			10479	1712	6890	6942	14512;14513	14512					0.08979252173844543
LFDESYSQCL	10	Unmodified	_LFDESYSQCL_					0	0	0			REV__UNC13C|p.S565L|1|0.1|ENSG00000137766|chr15:54014597-54014597|C/T|missense_variant	REV__UNC13C|p.S565L|1|0.1|ENSG00000137766|chr15:54014597-54014597|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.76123046875	2	602.763171	1203.51179	0.078409	4.7262E-05	-2.4814	-0.0014957	-2.403	-0.0014485	602.761670617664	42.948	0.64545	43.037	42.781	43.426	0.089764					35	23	2	0	0	0	0.45133	1	8031	8031		4.5289	1.2476	1	51210	+		10480	13327	6891	6943	14514	14514					-0.0818253846175594
LFDFTGQI	8	Unmodified	_LFDFTGQI_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7424011230469	2	470.742368	939.470183	-0.09818	-4.6218E-05	0.14146	6.6589E-05	0.043275	2.0371E-05	470.74229717182607	72	1.2446	72	71.502	72.747	0					102	43	3	0	0	0	0.42348	1	16972	16972		23.148	2.6948	1	665400	+		10481	9142	6892	6944	14515	14515					-0.001973063681361964
LFDHAVSKF	9	Unmodified	_LFDHAVSKF_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2822875976562	2	532.282192	1062.54983	-0.1455	-7.7446E-05	0.10159	5.4075E-05	-0.043907	-2.3371E-05	532.2819733061393	44.662	0.79366	44.662	44.444	45.238	0					58	28	3	0	0	0	0.054729	1	8699	8699		42.312	28.406	1	161720			10482	727	6893	6945	14516	14516					0.021057603058579843
LFDHAVSKF	9	Unmodified	_LFDHAVSKF_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.281494140625	2	532.282192	1062.54983	0.15868	8.4461E-05	-0.15687	-8.3499E-05	0.0018074	9.6207E-07	532.2820071268228	44.577	0.48465	44.664	44.479	44.964	0.08754					36	17	3	0	0	0	0.026931	2	8544	8544;8596		53.317	31.57	1	111490			10483	727	6893	6945	14517;14518	14517					0.021057603058579843
LFDITGQDF	9	Unmodified	_LFDITGQDF_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7576293945312	2	528.25584	1054.49713	0.80829	0.00042698	0.2317	0.0001224	1.04	0.00054938	528.2559260861119	81.02	0.65002	81.02	80.784	81.434	0					43	21	3	0	0	0	0.004443	2	19785	19754;19785		93.166	47.466	1	454280			10484	1552	6894	6946	14519;14520	14520					-0.027942425476112476
LFDITGQDF	9	Unmodified	_LFDITGQDF_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.757568359375	2	528.25584	1054.49713	0.56217	0.00029697	0.96532	0.00050994	1.5275	0.00080691	528.2562285148587	81.029	0.54082	81.053	80.82	81.36	0.023605					44	18	3	0	0	0	0.0077293	2	19631	19584;19631		74.2	28.5	1	467770			10485	1552	6894	6946	14521;14522	14522					-0.027942425476112476
LFDLGGQYL	9	Unmodified	_LFDLGGQYL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.26953125	2	513.26875	1024.52295	0.73232	0.00037588	-0.41113	-0.00021102	0.3212	0.00016486	513.2685842306774	84.186	0.3091	84.186	83.99	84.299	0					26	13	3	0	0	0	0.017478	1	20720	20720		60.074	29.437	1	266510			10486	4796	6895	6947	14523	14523					0.011666516946661432
LFDLGGQYL	9	Unmodified	_LFDLGGQYL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2686767578125	2	513.26875	1024.52295	0.41423	0.00021261	-0.50553	-0.00025947	-0.091298	-4.686E-05	513.268515921285	84.204	0.34732	84.225	83.948	84.295	0.021744					27	12	3	0	0	0	0.0093779	1	20566	20566		69.105	33.061	1	363400			10487	4796	6895	6947	14524	14524					0.011666516946661432
LFDLLFRSW	9	Unmodified	_LFDLLFRSW_					0	0	0		ENST00000606961.1_1_6:33665432-33665861:-|nuORF	ENST00000606961.1_1_6:33665432-33665861:-|nuORF	ENST00000606961.1_1_6:33665432-33665861:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2440185546875	2	598.826766	1195.63898	0.13774	8.2484E-05	-1.538	-0.00092098	-1.4002	-0.0008385	598.8257483919373	58.369	0.37266	58.44	58.348	58.721	0.070477					16	12	2	0	0	0	0.2418	1	12737	12737		13.906	4.5229	1	121170			10488	7313	6896	6948	14525	14525					0.04898595265376571
LFDNFLFLY	9	Unmodified	_LFDNFLFLY_					0	0	0			REV__ENSG00000187510|ENST00000344636|PLEKHG7	REV__ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.3314208984375	2	596.307875	1190.6012	0.13363	7.9684E-05	-0.49831	-0.00029715	-0.36469	-0.00021746	596.3078437373593	73.995	1.1978	73.995	73.598	74.796	0					78	43	3	0	0	0	0.25579	1	17863	17863		4.3292	0	1	728840	+		10489	10734	6897	6949	14526	14526					0.013520842799152888
LFDPINLVF	9	Unmodified	_LFDPINLVF_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8045043945312	2	539.302593	1076.59063	0.18274	9.8551E-05	0.21591	0.00011644	0.39865	0.00021499	539.302567475775	104.36	0.23525	104.36	104.28	104.52	0					32	23	2	0	0	0	0.13341	1	26861	26861		26.268	9.1552	1	44597			10490	4018	6898	6950	14527	14527					0.0554010162547911
LFDPINLVF	9	Unmodified	_LFDPINLVF_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	539.302593	1076.59063	0.51784	0.00027927	-0.22277	-0.00012014	0.29507	0.00015913	539.3023032402714	104.38	0.15919	104.42	104.34	104.5	0.034004	0.027901	-0.00026669	NaN	26.268	14	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168750			10491	4018	6898	6950							0.0554010162547911
LFDQHVVN	8	Unmodified	_LFDQHVVN_					0	0	0		ENSG00000185002|ENST00000332958|RFX6	ENSG00000185002|ENST00000332958|RFX6	ENSG00000185002|ENST00000332958|RFX6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.26141357421875	2	486.250892	970.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.176	1	38.176	37.676	38.676	0								0	0	0	0.38822	1	6743	6743		4.756	0	1				10492	5004	6899	6951	14528	14528					0.0008061423767458109
LFDSILAHAE	10	Unmodified	_LFDSILAHAE_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3499145507812	2	558.290214	1114.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.86	1	104.89	104.39	105.39	0.034004								0	0	0	0.33738	1	26820	26820		3.2813	0.54611	1		+		10493	9804	6900	6952	14529	14529					0.013174217521054743
LFDSSIVPS	9	Unmodified	_LFDSSIVPS_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.6038818359375	2	482.752933	963.491313	-0.071227	-3.4385E-05	0.40084	0.00019351	0.32962	0.00015912	482.75291522673217	49.662	0.51616	49.662	49.452	49.968	0					35	17	3	0	0	0	0.20845	1	10238	10238		21.747	0	1	190290			10494	4791	6901	6953	14530	14530					0.008106589407361753
LFDTLVNFF	9	Unmodified	_LFDTLVNFF_					0	0	0		nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF	nc|ENSG00000128585|Q9UL63-2|MKLN1	nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.292724609375	2	558.292225	1114.5699	0.2084	0.00011635	-0.055532	-3.1003E-05	0.15287	8.5346E-05	558.2921590661776	104.96	0.23486	104.96	104.88	105.12	0					32	20	2	0	0	0	0.2125	1	27038	27038		17.113	6.9623	1	81200			10495	2401	6902	6954	14531	14531					0.017195112458011863
LFDTLVNFF	9	Unmodified	_LFDTLVNFF_					0	0	0		nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF	nc|ENSG00000128585|Q9UL63-2|MKLN1	nc|ENSG00000128585|Q9UL63-2|MKLN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.293212890625	2	558.292225	1114.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.06	1	105.09	104.59	105.59	0.034004								0	0	0	0.22786	1	26875	26875		13.906	5.9959	1				10496	2401	6902	6954	14532	14532					0.017195112458011863
LFEEYISYS	9	Unmodified	_LFEEYISYS_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.237548828125	2	575.76878	1149.52301	0.042517	2.448E-05	-1.9921	-0.001147	-1.9496	-0.0011225	575.7676166019825	34.034	0.46339	34.11	33.902	34.365	0.076244					26	17	2	0	0	0	0.25875	1	5379	5379		1.8442	0.19162	1	31335			10497	2061	6903	6955	14533	14533					-0.0457739309599674
LFEFGVFEY	9	Unmodified	_LFEFGVFEY_					0	0	0			REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant	REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7949829101562	2	575.776408	1149.53826	0.55622	0.00032026	-0.65622	-0.00037784	-0.099998	-5.7577E-05	575.7760749835426	97.495	0.14106	97.495	97.474	97.615	0					9	5	2	0	0	0	0.18364	1	24784	24784		20.454	4.6064	1	42110	+		10498	7819	6904	6956	14534	14534					-0.03052481508143501
LFEFGVFEY	9	Unmodified	_LFEFGVFEY_					0	0	0			REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant	REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7946166992188	2	575.776408	1149.53826	0.57502	0.00033108	-0.46212	-0.00026608	0.1129	6.5006E-05	575.7760416989124	97.429	0.17609	97.47	97.313	97.489	0.040848					10	8	2	0	0	0	0.25979	1	24582	24582		11.64	0	1	38366	+		10499	7819	6904	6956	14535	14535					-0.03052481508143501
LFEFGVFEY	9	Unmodified	_LFEFGVFEY_					0	0	0			REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant	REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	575.776408	1149.53826	0.55622	0.00032026	-0.65622	-0.00037784	-0.099998	-5.7577E-05	575.7760749835426	97.495	0.14106	97.495	97.474	97.615	0	0.0129	-0.00014361	NaN	20.454	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42110	+		10500	7819	6904	6956							-0.03052481508143501
LFEFGVFEY	9	Unmodified	_LFEFGVFEY_					0	0	0			REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant	REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	575.776408	1149.53826	0.57502	0.00033108	-0.46212	-0.00026608	0.1129	6.5006E-05	575.7760416989124	97.429	0.17609	97.47	97.313	97.489	0.040848	-0.0129	7.9911E-05	NaN	20.454	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38366	+		10501	7819	6904	6956							-0.03052481508143501
LFEKEPHLS	9	Unmodified	_LFEKEPHLS_					0	0	0			REV__ENST00000536737.1_1_12:16050816-16050996:+|nuORF	REV__ENST00000536737.1_1_12:16050816-16050996:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.750244140625	2	550.292756	1098.57096	0.4858	0.00026733	-0.39665	-0.00021827	0.089152	4.906E-05	550.2925775439403	62.624	0.25229	62.697	62.605	62.857	0.072701					12	8	2	0	0	0	0.2446	1	14041	14041		11.64	0	1	100290	+		10502	8004	6905	6957	14536	14536					0.025617256147143053
LFEQYFII	8	Unmodified	_LFEQYFII_					0	0	0			REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.779296875	2	536.789318	1071.56408	0.37921	0.00020355	0.45011	0.00024161	0.82931	0.00044517	536.789486531187	96.117	0.45229	96.117	95.891	96.343	0					57	24	3	0	0	0	0.43379	1	24359	24359		21.747	5.8995	1	491600	+		10503	8504	6906	6958	14537	14537					0.031164127341526182
LFEQYFII	8	Unmodified	_LFEQYFII_					0	0	0			REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7794189453125	2	536.789318	1071.56408	0.56048	0.00030086	0.081667	4.3838E-05	0.64214	0.0003447	536.7893264453212	96.086	0.49982	96.126	95.863	96.363	0.039772					59	27	3	0	0	0	0.37883	2	24185	24185;24231		28.487	10.352	1	413280	+		10504	8504	6906	6958	14538;14539	14538					0.031164127341526182
LFEQYFII	8	Unmodified	_LFEQYFII_					0	0	0			REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	536.789318	1071.56408	0.56048	0.00030086	0.081667	4.3838E-05	0.64214	0.0003447	536.7893264453212	96.086	0.49982	96.126	95.863	96.363	0.039772	0.0047744	-0.00028081	NaN	28.487	59	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413280	+		10505	8504	6906	6958							0.031164127341526182
LFEWLWML	8	Unmodified	_LFEWLWML_					0	0	0			REV__nc|ENSG00000176700|Q9GZW5-2|SCAND2P	REV__nc|ENSG00000176700|Q9GZW5-2|SCAND2P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2933349609375	2	569.293714	1136.57287	-0.24607	-0.00014009	-0.04354	-2.4787E-05	-0.28961	-0.00016487	569.2935880230967	25.215	0.4822	25.215	25.08	25.562	0					74	38	3	0	0	0	0.54081	1	3007	3007		0.79363	0	1	54764	+		10506	11483	6907	6959	14540	14540					0.01005063098955361
LFFGPVGFNF	10	Unmodified	_LFFGPVGFNF_					0	0	0		ENST00000575209.5_1_17:5386088-5389490:-|nuORF;ENST00000574700.5_1_17:5384531-5389490:-|nuORF;ENST00000573637.5_1_17:5384531-5389413:-|nuORF;ENSG00000072849|ENST00000158771|DERL2	ENST00000575209.5_1_17:5386088-5389490:-|nuORF	ENST00000575209.5_1_17:5386088-5389490:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.8056640625	2	572.794935	1143.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.66	1	102.7	102.2	103.2	0.040916								0	0	0	0.32245	1	26191	26191		14.838	9.1064	1				10507	791	6908	6960	14541	14541					0.009272348282593157
LFFPGWCLFF	10	Unmodified	_LFFPGWCLFF_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.8008422851562	2	638.814813	1275.61507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.85	1	89.884	89.384	90.384	0.034065								0	0	0	0.33411	1	22299	22299		7.9102	0.80843	1		+		10508	11107	6909	6961	14542	14542					-0.01170961492675815
LFFSGQEL	8	Unmodified	_LFFSGQEL_					0	0	0		ENST00000606230.2_1_9:14322132-14322207:-|nuORF	ENST00000606230.2_1_9:14322132-14322207:-|nuORF	ENST00000606230.2_1_9:14322132-14322207:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.741943359375	2	470.742368	939.470183	-0.10274	-4.8365E-05	0.16423	7.7309E-05	0.061487	2.8944E-05	470.7423062081859	71.909	1.2067	71.965	71.54	72.746	0.055939					101	42	3	0	0	0	0.48462	1	16763	16763		14.838	0	1	611890			10509	7310	6910	6962	14543	14543					-0.001973063681361964
LFFTDSLVNF	10	Unmodified	_LFFTDSLVNF_					0	0	0			REV__ENSG00000143630|ENST00000368358|HCN3	REV__ENSG00000143630|ENST00000368358|HCN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3130493164062	2	601.808239	1201.60193	0.43733	0.00026319	4.0191	0.0024187	4.4564	0.0026819	602.3130250241251	77.221	0.29509	77.221	76.975	77.27	0					15	10	2	0	0	0	0.42901	1	18613	18613		8.7454	2.5396	1	608550	+		10510	9472	6911	6963	14544	14544					0.009188789289282795
LFFVPCIFL	9	Unmodified	_LFFVPCIFL_					0	0	0		ENSG00000181903|ENST00000314259|OR4C6;ENSG00000181958|ENST00000641526|OR4A15;nc|ENSG00000225997|P0C604|OR4A8;nc|ENSG00000181958|Q8NGL6|OR4A15	ENSG00000181903|ENST00000314259|OR4C6	ENSG00000181903|ENST00000314259|OR4C6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8076782226562	2	549.806457	1097.59836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.48	1	104.48	103.98	104.98	0								0	0	0	0.28409	1	26884	26884		2.3027	0	1				10511	4852	6912	6964	14545	14545					0.05346537621380776
LFFYLQAL	8	Unmodified	_LFFYLQAL_					0	0	0			REV__nc|ENSG00000262085|Q8NH06|OR1P1	REV__nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7848815917969	2	507.786579	1013.5586	0.28026	0.00014231	-3.8872	-0.0019739	-3.6069	-0.0018315	508.28617397051244	73.623	0.34864	73.676	73.482	73.831	0.052567					21	12	2	0	0	0	0.49441	1	17366	17366		13.508	0	1	80996	+		10512	12907	6913	6965	14546	14546					0.05236733942308547
LFGDYLCLCLL	11	Unmodified	_LFGDYLCLCLL_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.3209228515625	2	636.821978	1271.6294	0.69794	0.00044446	-0.28374	-0.00018069	0.4142	0.00026377	636.8217535714663	81.409	1.0015	81.409	80.902	81.903	0					58	25	3	0	0	0	0.40453	1	19832	19832		3.2813	1.4371	1	198530	+		10513	9304	6914	6966	14547	14547					0.004453228733154901
LFGETILST	9	Unmodified	_LFGETILST_					0	0	0			REV__ADAMTS12|p.D1289V|1|0.31|ENSG00000151388|chr5:33576160-33576160|T/A|missense_variant	REV__ADAMTS12|p.D1289V|1|0.31|ENSG00000151388|chr5:33576160-33576160|T/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2687072753906	2	490.768583	979.522613	0.22242	0.00010916	2.7495	0.0013494	2.9719	0.0014585	490.769994228398	78.757	0.27656	78.757	78.705	78.982	0					12	9	2	0	0	0	0.2446	1	19115	19115		7.2892	2.96	1	67366	+		10514	7695	6915	6967	14548	14548					0.03203231974816845
LFGFFCECL	9	Unmodified	_LFGFFCECL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000553399.1_1_14:68282485-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.828857421875	2	539.740457	1077.46636	0.21849	0.00011793	-1.2426	-0.0006707	-1.0241	-0.00055277	539.7393077103044	51.005	0.35192	51.005	50.856	51.208	0					17	11	2	0	0	0	0.25051	1	10620	10620		7.9102	0.62092	1	109560			10515	782	6916	6968	14549	14549					-0.06927435457873798
LFGRSGFF	8	Unmodified	_LFGRSGFF_					0	0	0			REV__ENSG00000178878|ENST00000356591|APOLD1	REV__ENSG00000178878|ENST00000356591|APOLD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7700500488281	2	465.745245	929.475937	0.00037655	1.7537E-07	0.13708	6.3844E-05	0.13746	6.4019E-05	465.7451116384012	58.448	0.83553	58.518	58.184	59.02	0.070477					50	29	2	0	0	0	0.53771	1	12864	12864		2.8892	0	1	290790	+		10516	10462	6917	6969	14550	14550					0.008378369341926373
LFGTCFFAFIH	11	Unmodified	_LFGTCFFAFIH_					0	0	0			REV__ENST00000474198.1_1_5:152870409-152873630:+|nuORF	REV__ENST00000474198.1_1_5:152870409-152873630:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.88226318359375	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.58	1	103.62	103.12	104.12	0.03791								0	0	0	0.33799	1	26461	26461		1.4551	0.34536	1		+		10517	9729	6918	6970	14551	14551					-0.012047644693211623
LFHAYGLPRF	10	Unmodified	_LFHAYGLPRF_					0	0	0		ENST00000360284.7_1_12:52448627-52448831:+|nuORF	ENST00000360284.7_1_12:52448627-52448831:+|nuORF	ENST00000360284.7_1_12:52448627-52448831:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.55706787109375	3	407.557348	1219.65021	0.00024723	1.0076E-07	-0.03866	-1.5756E-05	-0.038413	-1.5655E-05	407.5572833972125	39.929	2.6465	39.929	39.633	42.279	0					238	94	5	0	0	0	0.43672	1	7672	7672		3.8763	0	1	529770			10518	6150	6919	6971	14552	14552					0.04917417359479259
LFHAYGLPRF	10	Unmodified	_LFHAYGLPRF_					0	0	0		ENST00000360284.7_1_12:52448627-52448831:+|nuORF	ENST00000360284.7_1_12:52448627-52448831:+|nuORF	ENST00000360284.7_1_12:52448627-52448831:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.55706787109375	3	407.557348	1219.65021	-0.17443	-7.1089E-05	0.21126	8.6099E-05	0.03683	1.501E-05	407.5574679532945	39.711	2.1526	39.8	39.513	41.666	0.088566					237	83	5	0	0	0	0.45443	1	7496	7496		1.9064	0.1641	1	1500700			10519	6150	6919	6971	14553	14553					0.04917417359479259
LFHICFYI	8	Unmodified	_LFHICFYI_					0	0	0			REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF	REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2749633789062	2	528.272781	1054.53101	0.16392	8.6594E-05	2.3013	0.0012157	2.4653	0.0013023	528.2744615793292	59.758	0.22718	59.83	59.712	59.939	0.072342					14	8	2	0	0	0	0.51202	1	13166	13166		11.114	0	1	70389	+		10520	8972	6920	6972	14554	14554					0.005925074104425221
LFHKELLAIE	10	Unmodified	_LFHKELLAIE_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.8602294921875	3	404.904413	1211.69141	0.085185	3.4492E-05	0.0095949	3.885E-06	0.09478	3.8377E-05	404.9042332243075	50.662	0.44536	50.735	50.579	51.024	0.07312					20	16	2	0	0	0	0.31786	1	10394	10394		5.0475	0	1	32369	+		10521	8192	6921	6973	14555	14555					0.09403133608293501
LFHKELLAIE	10	Unmodified	_LFHKELLAIE_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	404.904413	1211.69141	0.38487	0.00015584	-0.27862	-0.00011282	0.10625	4.3021E-05	404.90416835016094	50.693	0.41454	50.693	50.567	50.981	0	-0.020995	-0.0001569	NaN	5.0475	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37259	+		10522	8192	6921	6973							0.09403133608293501
LFHPQVTRSS	10	Unmodified	_LFHPQVTRSS_					0	0	0			REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.31494140625	2	586.314554	1170.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.23	1	101.27	100.77	101.77	0.042656								0	0	0	0.33681	1	25764	25764		3.9444	1.2092	1		+		10523	10215	6922	6974	14556	14556					0.03607335111860266
LFHRMLQL	8	Unmodified	_LFHRMLQL_					0	0	0			REV__ENST00000488564.2_1_7:27881117-27881465:+|nuORF	REV__ENST00000488564.2_1_7:27881117-27881465:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3028564453125	2	529.302404	1056.59026	0.60581	0.00032066	-1.2726	-0.00067357	-0.66675	-0.00035291	529.3018508350023	85.174	0.98727	85.174	84.818	85.806	0					55	39	2	0	0	0	0.50159	1	21008	21008		12.532	2.4576	1	176100	+		10524	12136	6923	6975	14557	14557					0.06422403424630829
LFHRSNIGVEM	11	Unmodified	_LFHRSNIGVEM_					0	0	0		nc|ENSG00000204361|Q96DL1-3|NXPE2;ENSG00000204361|ENST00000389586|NXPE2	nc|ENSG00000204361|Q96DL1-3|NXPE2	nc|ENSG00000204361|Q96DL1-3|NXPE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8822021484375	3	434.89229	1301.65504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.33	1	107.35	106.85	107.85	0.025711								0	0	0	0.34068	1	27495	27495		0.50596	0.051438	1				10525	5467	6924	6976	14558	14558					0.016279334399314394
LFHSFLIVF	9	Unmodified	_LFHSFLIVF_					0	0	0		SCN1A|p.F937L|1|0.27|ENSG00000144285|chr2:166037911-166037911|G/T|missense_variant	SCN1A|p.F937L|1|0.27|ENSG00000144285|chr2:166037911-166037911|G/T|missense_variant	SCN1A|p.F937L|1|0.27|ENSG00000144285|chr2:166037911-166037911|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8182373046875	2	561.820953	1121.62735	0.32756	0.00018403	0.49818	0.00027989	0.82573	0.00046391	561.8187834843982	47.929	1.811	47.929	47.583	49.394	0					246	62	6	0	0	0	0.25209	1	9883	9883		12.532	0	1	2184600			10526	13357	6925	6977	14559	14559					0.07140398242040646
LFHVEQRQ	8	Unmodified	_LFHVEQRQ_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7813110351562	2	528.78289	1055.55123	-0.10632	-5.6219E-05	-0.59439	-0.0003143	-0.70071	-0.00037052	528.7823380900561	26.968	0.26829	27.054	26.939	27.207	0.0867					29	17	2	0	0	0	0.54081	1	3323	3323		0.79363	0.10326	1	24651			10527	1900	6926	6978	14560	14560					0.02567394394600342
LFIDNIFRF	9	Unmodified	_LFIDNIFRF_					0	0	0		ENSG00000110955|ENST00000262030|ATP5F1B;tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1	ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.270751953125	2	592.826766	1183.63898	0.18653	0.00011058	-0.061528	-3.6475E-05	0.125	7.4104E-05	592.8263264017999	89.526	0.40948	89.558	89.385	89.794	0.032257					25	15	3	0	0	0	0.24929	1	22189	22189		9.3831	5.0539	1	132870			10528	1687	6927	6979	14561	14561					0.05450595265369884
LFIDNIFRF	9	Unmodified	_LFIDNIFRF_					0	0	0		ENSG00000110955|ENST00000262030|ATP5F1B;tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1	ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	592.826766	1183.63898	0.16222	9.6167E-05	0.067513	4.0024E-05	0.22973	0.00013619	592.8266967237656	89.605	0.37256	89.605	89.39	89.762	0	0.023333	4.1634E-05	NaN	9.3831	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143370			10529	1687	6927	6979							0.05450595265369884
LFIKVKANPF	10	Unmodified	_LFIKVKANPF_					0	0	0			REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8607177734375	2	588.860609	1175.70667	0.63082	0.00037146	-0.41763	-0.00024593	0.21318	0.00012553	588.8603919835455	83.386	0.49249	83.386	83.141	83.634	0					26	16	2	0	0	0	0.36288	2	20505	20453;20505		15.847	0.5987	1	201440	+		10530	13037	6928	6980	14562;14563	14563					0.12584045196172156
LFIKVKANPF	10	Unmodified	_LFIKVKANPF_					0	0	0			REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.861083984375	2	588.860609	1175.70667	0.50267	0.000296	-0.20096	-0.00011834	0.30171	0.00017766	588.8605491790064	83.367	0.67216	83.389	83.137	83.809	0.021751					42	23	3	0	0	0	0.3198	2	20302	20302;20382		20.454	5.0233	1	174050	+		10531	13037	6928	6980	14564;14565	14564					0.12584045196172156
LFINGYLII	9	Unmodified	_LFINGYLII_					0	0	0			REV__ENSG00000146383|ENST00000275198|TAAR6	REV__ENSG00000146383|ENST00000275198|TAAR6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.785400390625	2	533.320786	1064.62702	0.40541	0.00021622	-2.2852	-0.0012187	-1.8798	-0.0010025	533.3195528564513	91.121	0.27212	91.121	90.911	91.183	0					14	8	2	0	0	0	0.17491	1	22848	22848		21.747	0	1	71343	+		10532	9539	6929	6981	14566	14566					0.09728978522184661
LFIPSSKLLFL	11	Unmodified	_LFIPSSKLLFL_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;ENST00000566127.1_1_16:29556504-29560080:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.81494140625	2	639.397025	1276.7795	0.24333	0.00015558	0.49438	0.0003161	0.7377	0.00047169	639.397164252602	86.442	0.24623	86.467	86.291	86.537	0.025169					14	9	2	0	0	0	0.3109	1	21259	21259		2.086	0.60411	1	100810			10533	3647;7018	6930	6982	14567	14567					0.15217754198943112
LFIQGKLLF	9	Unmodified	_LFIQGKLLF_					0	0	0		ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.26806640625	2	539.836603	1077.65865	0.5199	0.00028066	-0.20978	-0.00011325	0.31011	0.00016741	539.8364295437607	74.899	0.69097	74.899	74.604	75.295	0					58	25	3	0	0	0	0.054458	1	17883	17883		57.471	13.064	1	861990			10534	5438	6931	6983	14568	14568					0.12292971276133358
LFIQGKLLF	9	Unmodified	_LFIQGKLLF_					0	0	0		ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8367309570312	2	539.836603	1077.65865	0.53353	0.00028802	-0.089772	-4.8462E-05	0.44376	0.00023956	539.8364211211584	74.892	0.85492	74.936	74.615	75.47	0.044037					57	30	3	0	0	0	0.024893	1	17750	17750		54.774	12.679	1	1012000			10535	5438	6931	6983	14569	14569					0.12292971276133358
LFKNDPLFF	9	Unmodified	_LFKNDPLFF_					0	0	0		nc|ENSG00000103642|P83111-2|LACTB;ENSG00000103642|ENST00000261893|LACTB	nc|ENSG00000103642|P83111-2|LACTB	nc|ENSG00000103642|P83111-2|LACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3869018554688	2	570.808042	1139.60153	0.032489	1.8545E-05	1.1995	0.00068468	1.232	0.00070323	571.3101135856525	73.507	0.42819	73.507	73.342	73.77	0					21	15	2	0	0	0	0.27929	1	17446	17446		9.3831	1.2276	1	112830			10536	1384	6932	6984	14570	14570					0.03731503999733832
LFLACMLKR	9	Unmodified	_LFLACMLKR_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.81591796875	2	547.81429	1093.61403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.09	1	117.09	116.59	117.59	0								0	0	0	0.28527	1	29738	29738		2.0598	0	1				10537	5308	6933	6985	14571	14571					0.07096500866782662
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3038330078125	2	522.802426	1043.5903	0.41256	0.00021569	-0.80419	-0.00042043	-0.39163	-0.00020474	522.8022418606723	94.218	0.55151	94.218	94.039	94.59	0					30	25	2	0	0	0	0.25579	1	23836	23836		4.3292	0	1	102530	+		10538	10630	6934	6986	14572	14572					0.07024681905613761
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.802490234375	2	522.802426	1043.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.288	1	94.326	93.826	94.826	0.038086								0	0	0	0.25992	1	23649	23649		7.2892	0	1		+		10539	10630	6934	6986	14573	14573					0.07024681905613761
LFLCFLLN	8	Unmodified	_LFLCFLLN_					0	0	0			REV__ENST00000486701.1_1_2:27663393-27664286:+|nuORF	REV__ENST00000486701.1_1_2:27663393-27664286:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7760925292969	2	491.775157	981.53576	0.47829	0.00023521	2.4623	0.0012109	2.9406	0.0014461	491.776266807206	68.775	0.54662	68.775	68.558	69.104	0					29	20	2	0	0	0	0.52502	1	16051	16051		9.3474	2.0582	1	104810	+		10540	12125	6935	6987	14574	14574					0.04425391553195368
LFLCLCSTSLL	11	Unmodified	_LFLCLCSTSLL_					0	0	0			REV__ENST00000581166.5_1_17:56423483-56423582:-|nuORF	REV__ENST00000581166.5_1_17:56423483-56423582:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.28857421875	2	606.821978	1211.6294	0.65186	0.00039556	4.1179	0.0024989	4.7698	0.0028944	606.8244861472378	69.389	0.24658	69.451	69.335	69.582	0.062126					12	8	2	0	0	0	0.31057	1	16049	16049		5.2969	0	1	103140	+		10541	12551	6936	6988	14575	14575					0.03205322873350269
LFLCSLCFIL	10	Unmodified	_LFLCSLCFIL_					0	0	0			REV__ENST00000261332.10_1_18:32920541-32920667:-|nuORF	REV__ENST00000261332.10_1_18:32920541-32920667:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3161010742188	2	586.316331	1170.61811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.059	1	90.059	89.559	90.559	0								0	0	0	0.33092	1	22520	22520		10.824	2.9138	1		+		10542	11229	6937	6989	14576	14576					0.03962545569856957
LFLDLPKSV	9	Unmodified	_LFLDLPKSV_					0	0	0		ENSG00000136943|ENST00000259470|CTSV	ENSG00000136943|ENST00000259470|CTSV	ENSG00000136943|ENST00000259470|CTSV	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.31005859375	2	516.310418	1030.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.926	1	98.926	98.426	99.426	0								0	0	0	0.28631	1	25219	25219		1.8442	0.36234	1				10543	2823	6938	6990	14577	14577					0.09220388142512093
LFLDPAPLL	9	Unmodified	_LFLDPAPLL_					0	0	0			REV__ENST00000332065.9_1_17:74078001-74078805:-|nuORF	REV__ENST00000332065.9_1_17:74078001-74078805:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7996520996094	2	499.799686	997.584819	0.60911	0.00030443	-0.18995	-9.4936E-05	0.41916	0.0002095	499.79950110965535	93.196	0.55656	93.196	92.928	93.485	0					52	21	3	0	0	0	0.22344	1	23439	23439		15.847	0	1	352040	+		10544	11423	6939	6991	14578	14578					0.08593003113799114
LFLDPAPLL	9	Unmodified	_LFLDPAPLL_					0	0	0			REV__ENST00000332065.9_1_17:74078001-74078805:-|nuORF	REV__ENST00000332065.9_1_17:74078001-74078805:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.79998779296875	2	499.799686	997.584819	0.54585	0.00027282	-0.006467	-3.2322E-06	0.53939	0.00026959	499.79957787547477	93.125	0.58498	93.162	92.949	93.534	0.037369					70	25	4	0	0	0	0.17247	2	23298	23298;23346		21.747	0	1	296620	+		10545	11423	6939	6991	14579;14580	14579					0.08593003113799114
LFLFARLCH	9	Unmodified	_LFLFARLCH_					0	0	0			REV__ENST00000369491.1_1_1:116948760-116961114:-|nuORF	REV__ENST00000369491.1_1_1:116948760-116961114:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7658081054688	2	560.310229	1118.60591	0.11968	6.7057E-05	2.4468	0.001371	2.5665	0.001438	560.3115354679596	34.698	0.43868	34.698	34.505	34.944	0					18	16	2	0	0	0	0.25051	1	5710	5710		7.9102	0	1	29496	+		10546	11582	6940	6992	14581	14581					0.05134689941678516
LFLFFFSFFFF	11	Unmodified	_LFLFFFSFFFF_					0	0	0		ENST00000336967.7_1_19:54377816-54378302:+|nuORF	ENST00000336967.7_1_19:54377816-54378302:+|nuORF	ENST00000336967.7_1_19:54377816-54378302:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.26409912109375	3	503.593287	1507.75803	0.46194	0.00023263	-0.56611	-0.00028509	-0.10417	-5.2457E-05	503.5931527138112	88.012	0.22289	88.012	87.981	88.204	0					9	8	2	0	0	0	0.31091	1	21909	21909		2.4348	0.35082	1	38737			10547	6076	6941	6993	14582	14582					0.02446369170206708
LFLFLWFILG	10	Unmodified	_LFLFLWFILG_					0	0	0		nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272;ENSG00000281106|ENST00000629372|TMEM272	nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8792114257812	2	634.875728	1267.7369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.81	1	107.83	107.33	108.33	0.022224								0	0	0	0.33861	1	27608	27608		1.8442	0	1				10548	5771	6942	6994	14583	14583					0.11374403861373139
LFLFVDRTW	9	Unmodified	_LFLFVDRTW_					0	0	0			REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.826416015625	2	598.826766	1195.63898	0.50897	0.00030478	0.092395	5.5328E-05	0.60136	0.00036011	598.8267978268389	69.462	0.87352	69.462	69.269	70.142	0					69	30	4	0	0	0	0.17428	1	16427	16427		21.537	4.4241	1	747550	+		10549	11819	6943	6995	14584	14584					0.048985952653538334
LFLIVGLINQ	10	Unmodified	_LFLIVGLINQ_					0	0	0			REV__nc|ENSG00000113504|Q9Y666-2|SLC12A7	REV__nc|ENSG00000113504|Q9Y666-2|SLC12A7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.772216796875	2	565.352617	1128.69068	0.22134	0.00012513	0.2232	0.00012619	0.44454	0.00025132	565.3525631054963	79.215	0.7903	79.241	78.783	79.573	0.026428					44	27	2	0	0	0	0.31771	1	18974	18974		4.3292	0	1	163030	+		10550	8745	6944	6996	14585	14585					0.13148338959263128
LFLLHMPQL	9	Unmodified	_LFLLHMPQL_					0	0	0			REV__MFSD5|p.S316F|1|0.27|ENSG00000182544|chr12:53253782-53253782|C/T|missense_variant	REV__MFSD5|p.S316F|1|0.27|ENSG00000182544|chr12:53253782-53253782|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.8209838867188	2	556.320263	1110.62597	0.6893	0.00038347	-3.573	-0.0019877	-2.8837	-0.0016043	556.8209881954658	64.722	1.0932	64.79	64.478	65.572	0.068916					117	41	5	0	0	0	0.1182	1	14621	14621		28.487	1.6032	1	1596900	+		10551	12734	6945	6997	14586	14586					0.07508440881611023
LFLNPCVPF	9	Unmodified	_LFLNPCVPF_					0	0	0		ENST00000233809.8_2_2:217528903-217529134:+|nuORF	ENST00000233809.8_2_2:217528903-217529134:+|nuORF	ENST00000233809.8_2_2:217528903-217529134:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2759399414062	2	525.278063	1048.54157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.404	1	52.471	51.971	52.971	0.067173								0	0	0	0.25692	1	10909	10909		7.9102	1.7044	1				10552	5817	6946	6998	14587	14587					0.019244900648573093
LFLPYSHFL	9	Unmodified	_LFLPYSHFL_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8103637695312	2	568.810585	1135.60662	0.23377	0.00013297	-0.17399	-9.8969E-05	0.05978	3.4004E-05	568.810403743305	78.005	0.93759	78.005	77.743	78.681	0					80	31	4	0	0	0	0.0099477	1	18855	18855		67.344	35.227	1	794020			10553	1908	6947	6999	14588	14588					0.04423807862372087
LFLPYSHFL	9	Unmodified	_LFLPYSHFL_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8104248046875	2	568.810585	1135.60662	0.4225	0.00024032	-0.21799	-0.000124	0.20451	0.00011633	568.8104004695194	77.999	0.99512	78.034	77.768	78.763	0.034485					65	34	3	0	0	0	0.021119	1	18706	18706		57.471	21.427	1	1003200			10554	1908	6947	6999	14589	14589					0.04423807862372087
LFLSKTPLF	9	Unmodified	_LFLSKTPLF_					0	0	0		ENST00000243253.7_1_3:127788937-127789180:+|nuORF	ENST00000243253.7_1_3:127788937-127789180:+|nuORF	ENST00000243253.7_1_3:127788937-127789180:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7849731445312	2	533.320786	1064.62702	0.29065	0.00015501	-2.362	-0.0012597	-2.0713	-0.0011047	533.3196497865683	91.044	0.34573	91.08	90.909	91.254	0.035439					16	11	2	0	0	0	0.25281	1	22663	22663		6.7232	1.4925	1	51621			10555	5827	6948	7000	14590	14590					0.09728978522161924
LFLTFYIK	8	Unmodified	_LFLTFYIK_					0	0	0		nc|ENSG00000167895|Q8IU68-2|TMC8;ENSG00000167895|ENST00000318430|TMC8	nc|ENSG00000167895|Q8IU68-2|TMC8	nc|ENSG00000167895|Q8IU68-2|TMC8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.8024291992188	2	522.810054	1043.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.357	1	93.357	92.857	93.857	0								0	0	0	0.38822	1	23525	23525		4.756	0.42677	1				10556	4239	6949	7001	14591	14591					0.08549593493444263
LFMDLQAVL	9	Unmodified	_LFMDLQAVL_					0	0	0		ENST00000582384.1_1_17:26646301-26653610:+|nuORF;ENSG00000109084|ENST00000226230|TMEM97	ENST00000582384.1_1_17:26646301-26653610:+|nuORF	ENST00000582384.1_1_17:26646301-26653610:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.28662109375	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.695	1	92.731	92.231	93.231	0.03653								0	0	0	0.26517	1	23163	23163		6.2058	1.4498	1				10557	1621	6950	7002	14592	14592					0.04036455373739045
LFNLIFWL	8	Unmodified	_LFNLIFWL_					0	0	0		ENSG00000011105|ENST00000011898|TSPAN9	ENSG00000011105|ENST00000011898|TSPAN9	ENSG00000011105|ENST00000011898|TSPAN9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7682495117188	2	533.310221	1064.60589	0.72816	0.00038833	-4.1756	-0.0022269	-3.4474	-0.0018385	533.3078889394684	79.854	0.31065	79.854	79.711	80.022	0					12	10	2	0	0	0	0.3576	1	19375	19375		2.5775	0	1	107360			10558	422	6951	7003	14593	14593					0.07617013213325663
LFNLLSMLF	9	Unmodified	_LFNLLSMLF_					0	0	0			REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7503051757812	2	549.306821	1096.59909	0.44451	0.00024417	2.2702	0.0012471	2.7148	0.0014912	549.3076323293749	62.399	0.20937	62.471	62.396	62.605	0.072701					10	6	2	0	0	0	0.24263	1	13941	13941		12.532	0	1	62327	+		10559	9028	6952	7004	14594	14594					0.054653322704325547
LFNNRLVH	8	Unmodified	_LFNNRLVH_					0	0	0		ENSG00000176020|ENST00000320431|AMIGO3	ENSG00000176020|ENST00000320431|AMIGO3	ENSG00000176020|ENST00000320431|AMIGO3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.77960205078125	2	506.787976	1011.5614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.512	1	99.555	99.055	100.05	0.042839								0	0	0	0.38822	1	25241	25241		5.2307	0.47466	1				10560	4646	6953	7005	14595	14595					0.05608002119845423
LFNPFTSLTF	10	Unmodified	_LFNPFTSLTF_					0	0	0			REV__OR6C74|p.T73Lfs*62|1|0.26|ENSG00000197706|chr12:55247503-55247503|A/-|frameshift_variant	REV__OR6C74|p.T73Lfs*62|1|0.26|ENSG00000197706|chr12:55247503-55247503|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.8005981445312	2	593.810782	1185.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.423	1	71.423	70.923	71.923	0								0	0	0	0.33215	1	16839	16839		9.3831	0	1		+		10561	12945	6954	7006	14596	14596					0.02163182791559848
LFNTFVQKQ	9	Unmodified	_LFNTFVQKQ_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.80712890625	2	562.808574	1123.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.615	1	17.615	17.115	18.115	0								0	0	0	0.28527	1	956	956		2.0598	0.21551	1				10562	3823	6955	7007	14597	14597					0.04573718368669688
LFPFPIHGH	9	Unmodified	_LFPFPIHGH_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2726440429688	2	532.787444	1063.56034	0.58886	0.00031374	0.87644	0.00046695	1.4653	0.00078069	532.7875249736135	70.054	0.12883	70.115	70.065	70.194	0.060562					7	5	2	0	0	0	0.31136	1	16256	16256		5.2307	0	1	61703			10563	417	6956	7008	14598	14598					0.03109787750963733
LFPIVSDCLA	10	Unmodified	_LFPIVSDCLA_					0	0	0			REV__ENST00000542527.6_1_16:22092504-22092690:+|nuORF	REV__ENST00000542527.6_1_16:22092504-22092690:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2955322265625	2	539.286085	1076.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.173	1	87.2	86.7	87.7	0.027573								0	0	0	0.33156	1	21487	21487		10.074	1.9184	1		+		10564	12406	6957	7009	14599	14599					0.022401515111141634
LFPLLPQLY	9	Unmodified	_LFPLLPQLY_					0	0	0		ENST00000392723.5_2_1:151376834-151376924:-|nuORF	ENST00000392723.5_2_1:151376834-151376924:-|nuORF	ENST00000392723.5_2_1:151376834-151376924:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7975463867188	2	552.328611	1102.64267	0.22725	0.00012552	-0.69397	-0.0003833	-0.46672	-0.00025779	552.8295112383943	104.69	0.052399	104.69	104.66	104.72	0					5	4	2	0	0	0	0.25845	1	26943	26943		2.0598	0	1	25537			10565	6316	6958	7010	14600	14600					0.09545265039241713
LFPSSVTNSL	10	Unmodified	_LFPSSVTNSL_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7849731445312	2	532.784764	1063.55498	0.25623	0.00013651	-0.11743	-6.2565E-05	0.1388	7.3949E-05	532.7847805946396	90.996	0.42606	91.031	90.828	91.254	0.035446					24	14	2	0	0	0	0.42335	1	22663	22663		9.3831	0.78985	1	329120			10566	4000	6959	7011	14601	14601					0.025740193777892273
LFPSSVTNSL	10	Unmodified	_LFPSSVTNSL_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.784764	1063.55498	0.38577	0.00020553	0.10559	5.6259E-05	0.49136	0.00026179	532.7849269453559	90.957	0.44704	90.957	90.762	91.209	0	-0.037288	0.00013404	NaN	9.3831	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391200			10567	4000	6959	7011							0.025740193777892273
LFQFVREL	8	Unmodified	_LFQFVREL_					0	0	0			REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.287109375	2	526.300384	1050.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.152	1	53.152	52.652	53.652	0								0	0	0	0.38822	1	11272	11272		10.183	0	1		+		10568	7744	6960	7012	14602	14602					0.06294637202563536
LFQKYCQENPS	11	Unmodified	_LFQKYCQENPS_					0	0	0		nc|ENSG00000180336|A2RUB1-5|MEIOC;ENSG00000180336|ENST00000409122|MEIOC;nc|ENSG00000180336|A2RUB1-1|MEIOC;nc|ENSG00000180336|A2RUB1-2|MEIOC	nc|ENSG00000180336|A2RUB1-5|MEIOC	nc|ENSG00000180336|A2RUB1-5|MEIOC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.8699645996094	3	452.879939	1355.61799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.63	1	116.64	116.14	117.14	0.013062								0	0	0	0.34185	1	29568	29568		0.094841	0	1				10569	4804	6961	7013	14603	14603					-0.04559782896444631
LFQNQAALF	9	Unmodified	_LFQNQAALF_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2816772460938	2	526.282192	1050.54983	0.37415	0.00019691	-0.065912	-3.4688E-05	0.30824	0.00016222	526.282038655776	65.216	0.66169	65.285	65.188	65.849	0.068909					34	25	2	0	0	0	0.20367	1	14787	14787		18.135	3.2967	1	150130	+		10570	8324	6962	7014	14604	14604					0.026577603058285604
LFQPQPLYL	9	Unmodified	_LFQPQPLYL_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8157348632812	2	559.815867	1117.61718	0.56722	0.00031754	-0.14192	-7.9451E-05	0.4253	0.00023809	559.8157789298068	78.571	0.64896	78.602	78.138	78.787	0.030151					30	22	2	0	0	0	0.29576	1	18843	18843		7.2892	0	1	121710	+		10571	10074	6963	7015	14605	14605					0.06307790516780187
LFQPQPLYL	9	Unmodified	_LFQPQPLYL_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.3465576171875	2	559.815867	1117.61718	0.56722	0.00031754	-0.14192	-7.9451E-05	0.4253	0.00023809	559.8157789298068	78.571	0.64896	78.602	78.138	78.787	0.030151					30	22	2	0	0	0	0.25174	1	18888	18888		7.2892	0	1	121710	+		10572	10074	6963	7015	14606	14606					0.06307790516780187
LFQPQPLYL	9	Unmodified	_LFQPQPLYL_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	559.815867	1117.61718	0.3511	0.00019655	0.34186	0.00019138	0.69296	0.00038793	559.816158253683	78.256	0.32596	78.256	78.097	78.423	0	-0.17259	0.00037276	NaN	7.2892	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71962	+		10573	10074	6963	7015							0.06307790516780187
LFRKHKTISF	10	Unmodified	_LFRKHKTISF_					0	0	0		ENSG00000184140|ENST00000328882|OR4F6	ENSG00000184140|ENST00000328882|OR4F6	ENSG00000184140|ENST00000328882|OR4F6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.25604248046875	3	426.255669	1275.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.103	1	56.103	55.603	56.603	0								0	0	0	0.33378	1	12173	12173		7.4771	0	1				10574	4959	6964	7016	14607	14607					0.11833350830693234
LFRNRRSP	8	Unmodified	_LFRNRRSP_					0	0	0			REV__ENST00000594816.1_1_19:58941830-58942172:-|nuORF	REV__ENST00000594816.1_1_19:58941830-58942172:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.304324	1044.5941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.571	1	95.61	95.11	96.11	0.038872								0	0	0	0.38822	1	24042	24042		2.5775	0.27475	1		+		10575	12604	6965	7017	14608	14608					0.0735820924271593
LFRWAEEL	8	Unmodified	_LFRWAEEL_					0	0	0		ENSG00000164169|ENST00000322396|PRMT9	ENSG00000164169|ENST00000322396|PRMT9	ENSG00000164169|ENST00000322396|PRMT9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2679443359375	2	532.282192	1062.54983	0.47356	0.00025207	-0.27896	-0.00014849	0.1946	0.00010358	532.2821022766212	60.595	1.1584	60.595	60.26	61.418	0					103	41	3	0	0	0	0.45077	1	13642	13642		19.439	4.6007	1	869620			10576	3986	6966	7018	14609	14609					0.02105760305835247
LFRWAEEL	8	Unmodified	_LFRWAEEL_					0	0	0		ENSG00000164169|ENST00000322396|PRMT9	ENSG00000164169|ENST00000322396|PRMT9	ENSG00000164169|ENST00000322396|PRMT9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2677612304688	2	532.282192	1062.54983	0.36196	0.00019266	-0.2089	-0.00011119	0.15306	8.1472E-05	532.282096816777	60.542	1.2032	60.615	60.211	61.414	0.073421					105	41	4	0	0	0	0.45077	1	13500	13500		19.439	2.4967	1	820850			10577	3986	6966	7018	14610	14610					0.02105760305835247
LFSDLDTFF	9	Unmodified	_LFSDLDTFF_					0	0	0			REV__ENSG00000197233|ENST00000335302|OR1J2	REV__ENSG00000197233|ENST00000335302|OR1J2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7657470703125	2	552.76604	1103.51753	0.072852	4.027E-05	-0.24107	-0.00013326	-0.16822	-9.2985E-05	552.7658602564848	33.131	3.1028	33.131	32.487	35.589	0					332	122	3	0	0	0	0.32112	1	5441	5441		3.9444	1.2092	1	253180	+		10578	10847	6967	7019	14611	14611					-0.030090718878227563
LFSFESGRRC	10	Unmodified	_LFSFESGRRC_					0	0	0		ENSG00000137218|ENST00000373018|FRS3;ENSG00000166225|ENST00000549921|FRS2	ENSG00000137218|ENST00000373018|FRS3	ENSG00000137218|ENST00000373018|FRS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8079223632812	2	601.292765	1200.57098	0.45988	0.00027653	0.44481	0.00026746	0.90469	0.00054398	601.795467076038	76.104	0.040924	76.143	76.108	76.149	0.03923					4	2	2	0	0	0	0.38912	1	18116	18116		13.042	2.243	1	215430			10579	2840	6968	7020	14612	14612					-0.021285976569288323
LFSGQGSLLQ	10	Unmodified	_LFSGQGSLLQ_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7850341796875	2	525.284931	1048.55531	0.73179	0.0003844	-0.71339	-0.00037473	0.018407	9.6687E-06	525.7842785501583	66.613	0.87121	66.613	66.168	67.039	0					63	33	3	0	0	0	0.35104	1	15376	15376		17.113	0.96379	1	322360			10580	1627	6969	7021	14613	14613					0.03297439097673305
LFSKNDNHWI	10	Unmodified	_LFSKNDNHWI_					0	0	0			REV__ENSG00000104879|ENST00000221476|CKM	REV__ENSG00000104879|ENST00000221476|CKM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.21502685546875	3	425.21565	1272.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.385	1	96.385	95.885	96.885	0								0	0	0	0.33711	1	24448	24448		1.7423	0	1		+		10581	8517	6970	7022	14614	14614					-0.0002868223373297951
LFSNIDDII	9	Unmodified	_LFSNIDDII_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.76806640625	2	525.279315	1048.54408	0.25484	0.00013386	0.065785	3.4556E-05	0.32062	0.00016842	525.279716199384	53.345	0.27072	53.345	53.273	53.544	0					15	11	2	0	0	0	0.17247	1	11333	11333		21.747	0	1	74468			10582	4907	6971	7023	14615	14615					0.02174617003538515
LFSQPFGDFC	10	Unmodified	_LFSQPFGDFC_					0	0	0		ENST00000333751.4_1_17:7255914-7256001:+|nuORF	ENST00000333751.4_1_17:7255914-7256001:+|nuORF	ENST00000333751.4_1_17:7255914-7256001:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7576904296875	2	580.757692	1159.50083	0.52943	0.00030747	-1.4866	-0.00086333	-0.95712	-0.00055586	580.757189397688	38.356	2.6874	38.443	37.935	40.623	0.086884					225	104	5	0	0	0	0.27736	1	6682	6682		24.991	2.2547	1	2799300			10583	6065	6972	7024	14616	14616					-0.07253896045403962
LFSSDTWSL	9	Unmodified	_LFSSDTWSL_					0	0	0			REV__ENST00000508014.5_1_4:17585059-17587679:+|nuORF	REV__ENST00000508014.5_1_4:17585059-17587679:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2537231445312	2	528.25584	1054.49713	0.34222	0.00018078	-0.14169	-7.4849E-05	0.20053	0.00010593	528.2557296375136	75.908	0.31714	75.952	75.837	76.154	0.044037					28	24	2	0	0	0	0.25979	1	18111	18111		11.64	0.52583	1	901590	+		10584	12237	6973	7025	14617	14617					-0.027942425476112476
LFSSNKFIL	9	Unmodified	_LFSSNKFIL_					0	0	0			REV__ENST00000533047.5_2_11:71634518-71639632:-|nuORF	REV__ENST00000533047.5_2_11:71634518-71639632:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7765502929688	2	534.808042	1067.60153	0.41299	0.00022087	-0.58635	-0.00031358	-0.17336	-9.2713E-05	534.8077503800572	59.804	0.78621	59.877	59.546	60.332	0.072338					49	30	2	0	0	0	0.15911	1	13188	13188		32.305	3.8186	1	231180	+		10585	12343	6974	7026	14618	14618					0.07043503999761924
LFTKVEVEF	9	Unmodified	_LFTKVEVEF_					0	0	0		nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2	nc|ENSG00000087253|Q7L5N7-2|LPCAT2	nc|ENSG00000087253|Q7L5N7-2|LPCAT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8245239257812	2	556.305332	1110.59611	0.5143	0.00028611	1.2187	0.00067795	1.733	0.00096406	556.3060428220721	87.368	0.76205	87.368	87.186	87.948	0					47	27	2	0	0	0	0.2446	1	21875	21875		11.64	1.5664	1	299410			10586	991	6975	7027	14619	14619					0.0452378041729844
LFTNPLSSF	9	Unmodified	_LFTNPLSSF_					0	0	0			REV__ENST00000503042.5_1_5:1325844-1330799:-|nuORF	REV__ENST00000503042.5_1_5:1325844-1330799:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2680053710938	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.302	1	87.302	86.802	87.802	0								0	0	0	0.25361	1	21688	21688		8.5933	0	1		+		10587	12207	6976	7028	14620	14620					0.011666516946434058
LFTPYISVF	9	Unmodified	_LFTPYISVF_					0	0	0		ENST00000559160.1_2_15:59280096-59296221:+|nuORF;ENST00000348370.8_1_15:59280096-59323038:+|nuORF	ENST00000559160.1_2_15:59280096-59296221:+|nuORF	ENST00000559160.1_2_15:59280096-59296221:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2468872070312	2	543.797143	1085.57973	0.3728	0.00020273	-0.11928	-6.4865E-05	0.25352	0.00013786	543.7970032311257	91.732	0.54232	91.768	91.586	92.128	0.036522					44	19	3	0	0	0	0.2404	1	22916	22916		13.508	0	1	253630			10588	6105	6977	7029	14621	14621					0.04036699251173559
LFTSLAFMLV	10	Unmodified	_LFTSLAFMLV_					0	0	0		ENST00000491515.5_1_1:40432335-40433413:+|nuORF;ENST00000483824.5_1_1:40420832-40434017:+|nuORF;nc|ENSG00000168389|Q8NA29-3|MFSD2A;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A	ENST00000491515.5_1_1:40432335-40433413:+|nuORF	ENST00000491515.5_1_1:40432335-40433413:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3079833984375	2	571.319928	1140.6253	0.44178	0.0002524	-2.5332	-0.0014473	-2.0914	-0.0011949	571.3185039670317	78.117	0.59351	78.147	77.971	78.564	0.030159					46	20	3	0	0	0	0.19659	1	18734	18734		34.102	1.797	1	419480			10589	4284	6978	7030	14622	14622					0.0606160144191108
LFVKQTQQ	8	Unmodified	_LFVKQTQQ_					0	0	0			REV__ENSG00000004487|ENST00000400181|KDM1A	REV__ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.27203369140625	2	496.282192	990.549831	0.31049	0.00015409	0.023229	1.1528E-05	0.33372	0.00016562	496.2821621481474	50.484	0.46722	50.484	50.264	50.731	0					27	16	2	0	0	0	0.52502	1	10526	10526		9.3474	0.75416	1	136080	+		10590	7925	6979	7031	14623	14623					0.054177603058633395
LFVLSILGL	9	Unmodified	_LFVLSILGL_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.8173522949219	2	487.817879	973.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.49	1	103.49	102.99	103.99	0								0	0	0	0.23452	1	26603	26603		12.532	0	1				10591	7618	6980	7032	14624	14624					0.13333880010509347
LFWFFCKNQ	9	Unmodified	_LFWFFCKNQ_					0	0	0		ENST00000568684.1_1_16:69958981-69959194:+|nuORF	ENST00000568684.1_1_16:69958981-69959194:+|nuORF	ENST00000568684.1_1_16:69958981-69959194:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.7865600585938	2	616.799694	1231.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.595	1	76.634	76.134	77.134	0.03923								0	0	0	0.24995	1	18266	18266		9.3474	1.4373	1				10592	7186	6981	7033	14625	14625					-0.02169320157850052
LFWHPFAL	8	Unmodified	_LFWHPFAL_					0	0	0		ENST00000521425.5_2_8:71495515-71495891:-|nuORF	ENST00000521425.5_2_8:71495515-71495891:-|nuORF	ENST00000521425.5_2_8:71495515-71495891:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.301513671875	2	515.779088	1029.54362	0.45028	0.00023225	1.5858	0.00081793	2.0361	0.0010502	516.2816733926976	57.077	0.36495	57.145	56.972	57.337	0.068375					24	13	3	0	0	0	0.35759	1	12345	12345		11.114	0	1	104260			10593	6959	6982	7034	14626	14626					0.03003286864986876
LFYAGGIEIL	10	Unmodified	_LFYAGGIEIL_					0	0	0		TTC12-LUC7L2|1|fusion;ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12;ENST00000534793.1_1_11:113205756-113210225:+|nuORF	TTC12-LUC7L2|1|fusion	TTC12-LUC7L2|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.334228515625	2	548.307875	1094.6012	0.28909	0.00015851	0.76886	0.00042157	1.058	0.00058008	548.3083545846512	95.621	0.4211	95.621	95.405	95.826	0					22	18	2	0	0	0	0.30149	1	24174	24174		20.454	0	1	317790			10594	3396	6983	7035	14627	14627					0.05768084279907271
LFYFPLGSL	9	Unmodified	_LFYFPLGSL_					0	0	0			REV__ENSG00000155465|ENST00000674313|SLC7A7	REV__ENSG00000155465|ENST00000674313|SLC7A7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7794189453125	2	528.791861	1055.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.86	1	97.86	97.36	98.36	0								0	0	0	0.17567	1	24895	24895		21.747	4.8044	1		+		10595	9727	6984	7036	14628	14628					0.04360716596761449
LFYFPLGSL	9	Unmodified	_LFYFPLGSL_					0	0	0			REV__ENSG00000155465|ENST00000674313|SLC7A7	REV__ENSG00000155465|ENST00000674313|SLC7A7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7939453125	2	528.791861	1055.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.276	1	98.276	97.776	98.776	0								0	0	0	0.27613	1	25021	25021		3.9444	0.94915	1		+		10596	9727	6984	7036	14629	14629					0.04360716596761449
LFYRQGTATF	10	Unmodified	_LFYRQGTATF_					0	0	0			REV__ENSG00000018408|ENST00000360632|WWTR1	REV__ENSG00000018408|ENST00000360632|WWTR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.8076782226562	2	602.31148	1202.60841	0.51027	0.00030734	-1.3155	-0.00079233	-0.80521	-0.00048499	602.3102711160803	75.934	0.30257	75.934	75.713	76.015	0					35	23	3	0	0	0	0.28982	1	18222	18222		26.268	8.1332	1	1369400	+		10597	7994	6985	7037	14630	14630					0.01520816880338316
LFYSQFSMF	9	Unmodified	_LFYSQFSMF_					0	0	0			REV__ENSG00000064313|ENST00000378164|TAF2	REV__ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.270435	1168.52632	0.52199	0.0003055	-0.087761	-5.1364E-05	0.43422	0.00025414	585.2707264543741	77.32	0.34129	77.32	77.112	77.454	0					22	17	2	0	0	0	0.23975	1	18623	18623		14.838	6.9281	1	577590	+		10598	8092	6986	7038	14631	14631					-0.05120421522974539
LFYTIVTPL	9	Unmodified	_LFYTIVTPL_					0	0	0		ENSG00000188558|ENST00000641804|OR2G6	ENSG00000188558|ENST00000641804|OR2G6	ENSG00000188558|ENST00000641804|OR2G6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.8125610351562	2	533.812793	1065.61103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.054	1	96.054	95.554	96.554	0								0	0	0	0.25692	1	24346	24346		7.9102	0	1				10599	5161	6987	7039	14632	14632					0.0808527228530238
LFYTVINPL	9	Unmodified	_LFYTVINPL_					0	0	0		ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4	ENSG00000172457|ENST00000641668|OR9G4	ENSG00000172457|ENST00000641668|OR9G4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3101806640625	2	540.310418	1078.60628	0.53906	0.00029126	-0.33392	-0.00018042	0.20514	0.00011084	540.3099311333043	97.147	0.50349	97.147	96.908	97.412	0					48	24	3	0	0	0	0.24021	1	24688	24688		13.906	0	1	179200			10600	4497	6988	7040	14633	14633					0.07012388142516102
LFYYRDEK	8	Unmodified	_LFYYRDEK_					0	0	0		ENST00000510738.2_1_12:19413894-19459437:+|nuORF;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5	ENST00000510738.2_1_12:19413894-19459437:+|nuORF	ENST00000510738.2_1_12:19413894-19459437:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2837524414062	2	567.284931	1132.55531	-0.40028	-0.00022707	-0.51074	-0.00028974	-0.91102	-0.00051681	567.2846078140403	18.688	0.58114	18.688	18.502	19.083	0					138	67	3	0	0	0	0.54081	1	1261	1261		0.79363	0	1	44313			10601	591	6989	7041	14634	14634					-0.005665609023481011
LGAGLAVPF	9	Unmodified	_LGAGLAVPF_					0	0	0		ENST00000359534.3_1_6:39159395-39159479:-|nuORF	ENST00000359534.3_1_6:39159395-39159479:-|nuORF	ENST00000359534.3_1_6:39159395-39159479:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.19879150390625	2	422.749996	843.485439	0.085339	3.6077E-05	0.12126	5.1261E-05	0.20659	8.7338E-05	422.75000702300696	79.153	0.4774	79.18	78.986	79.464	0.026436					24	16	2	0	0	0	0.080938	1	19046	19046		28.173	7.302	1	115020			10602	6147	6990	7042	14635	14635					0.05743605219709025
LGAISGYRTTW	11	Unmodified	_LGAISGYRTTW_					0	0	0			REV__ENST00000487115.1_1_7:99707771-99708935:-|nuORF	REV__ENST00000487115.1_1_7:99707771-99708935:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.8062744140625	2	612.822212	1223.62987	0.1364	8.3586E-05	-0.19493	-0.00011946	-0.058534	-3.5871E-05	612.8220071660201	62.16	0.41765	62.16	61.974	62.392	0					27	15	2	0	0	0	0.33157	1	14044	14044		14.405	0.79051	1	468240	+		10603	8572	6991	7043	14636	14636					0.027002019090332396
LGAPDELLAF	10	Unmodified	_LGAPDELLAF_					0	0	0		TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000081059|P36402-7|TCF7;nc|ENSG00000081059|P36402|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant	TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037109375	2	523.281857	1044.54916	0.57686	0.00030186	0.35636	0.00018647	0.93322	0.00048834	523.2821936731169	80.687	0.4086	80.711	80.531	80.94	0.023605					29	13	3	0	0	0	0.31456	1	19493	19493		14.838	0	1	166780			10604	901	6992	7044	14637	14637					0.028669208661540324
LGAPGEKGLP	10	Unmodified	_LGAPGEKGLP_					0	0	0			REV__COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	REV__COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.76885986328125	2	469.768917	937.523281	0.040908	1.9217E-05	-0.18525	-8.7025E-05	-0.14434	-6.7807E-05	469.7687635111061	36.198	0.52304	36.198	35.999	36.522	0					34	19	2	0	0	0	0.44938	1	6136	6136		4.897	0.56777	1	62677	+		10605	7828	6993	7045	14638	14638					0.052020714145328384
LGDMFYDEDL	10	Unmodified	_LGDMFYDEDL_					0	0	0		ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.256103515625	2	609.255179	1216.49581	0.67758	0.00041282	0.89262	0.00054383	1.5702	0.00095665	609.255591103904	85.231	0.41226	85.231	85.07	85.482	0					27	14	2	0	0	0	0.31731	1	21059	21059		6.2058	0.9089	1	399600			10606	2952	6994	7046	14639	14639					-0.10378244698677008
LGDYYYCV	8	Unmodified	_LGDYYYCV_					0	0	0		ADCY2|p.C340Y|1|0.2|ENSG00000078295|chr5:7698284-7698284|G/A|missense_variant	ADCY2|p.C340Y|1|0.2|ENSG00000078295|chr5:7698284-7698284|G/A|missense_variant	ADCY2|p.C340Y|1|0.2|ENSG00000078295|chr5:7698284-7698284|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2288513183594	2	498.212586	994.410619	0.24607	0.0001226	-0.53565	-0.00026687	-0.28958	-0.00014427	498.2123938672513	35.962	0.21717	36.04	35.92	36.137	0.078827					11	7	2	0	0	0	0.53345	1	5941	5941		5.7604	0	1	21500			10607	14	6995	7047	14640	14640					-0.08680945373839677
LGEGHSFLSCP	11	Unmodified	_LGEGHSFLSCP_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3167724609375	2	573.766049	1145.51754	0.18231	0.0001046	-2.0295	-0.0011645	-1.8472	-0.0010599	574.2667039416885	52.669	1.2714	52.669	52.162	53.433	0					82	47	2	0	0	0	0.30965	1	11206	11206		12.241	0.74595	1	123210			10608	7506	6996	7048	14641	14641					-0.04939395159453852
LGEKQQETI	9	Unmodified	_LGEKQQETI_					0	0	0			REV__XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	REV__XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.79541015625	2	523.279846	1044.54514	0.53795	0.0002815	-0.35718	-0.0001869	0.18077	9.4595E-05	523.2796759002524	54.786	0.31123	54.851	54.672	54.983	0.065128					23	13	2	0	0	0	0.23908	1	11674	11674		16.149	0	1	118400	+		10609	8222	6997	7049	14642	14642					0.02464831372435583
LGESKEHPR	9	Unmodified	_LGESKEHPR_					0	0	0		ENSG00000161860|ENST00000293695|SYCE2	ENSG00000161860|ENST00000293695|SYCE2	ENSG00000161860|ENST00000293695|SYCE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7777099609375	2	526.777805	1051.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.821	1	25.821	25.321	26.321	0								0	0	0	0.28807	1	3084	3084		1.4819	0.15237	1				10610	3802	6998	7050	14643	14643					0.0173478666936262
LGFLVSRR	8	Unmodified	_LGFLVSRR_					0	0	0		ENST00000526920.1_1_17:8079275-8079428:-|nuORF	ENST00000526920.1_1_17:8079275-8079428:-|nuORF	ENST00000526920.1_1_17:8079275-8079428:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2908020019531	2	474.292894	946.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.642	1	77.676	77.176	78.176	0.034485								0	0	0	0.38822	1	18586	18586		1.8442	0	1				10611	6997	6999	7051	14644	14644					0.09581190125220473
LGFMPPHSVH	10	Unmodified	_LGFMPPHSVH_					0	0	0		ENST00000549572.5_1_12:53895423-53895927:+|nuORF	ENST00000549572.5_1_12:53895423-53895927:+|nuORF	ENST00000549572.5_1_12:53895423-53895927:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7951049804688	2	561.281669	1120.54878	0.59285	0.00033276	-1.2174	-0.00068329	-0.62452	-0.00035053	561.2810250514004	100.14	0.27472	100.19	99.999	100.27	0.042831					19	13	2	0	0	0	0.31712	1	25415	25415		6.7232	2.3939	1	72213			10612	7094	7000	7052	14645	14645					-0.006667773346862305
LGGLVEVLL	9	Unmodified	_LGGLVEVLL_					0	0	0		ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant	ENSG00000242866|ENST00000450892|STRC	ENSG00000242866|ENST00000450892|STRC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7919006347656	2	456.791861	911.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.914	1	82.936	82.436	83.436	0.021744								0	0	0	0.25692	1	20189	20189		7.9102	0	1				10613	5657	7001	7053	14646	14646					0.10984716596760791
LGGLVQKWFHA	11	Unmodified	_LGGLVQKWFHA_					0	0	0			REV__ENSG00000174721|ENST00000311575|FGFBP3	REV__ENSG00000174721|ENST00000311575|FGFBP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.8250122070312	2	628.35094	1254.68733	0.35163	0.00022095	-1.2428	-0.00078091	-0.89116	-0.00055996	628.350417748815	64.081	0.23716	64.081	63.998	64.235	0					9	7	2	0	0	0	0.3108	1	14612	14612		2.9952	0	1	67703	+		10614	10354	7002	7054	14647	14647					0.07017088905286073
LGGLVQKWFHA	11	Unmodified	_LGGLVQKWFHA_					0	0	0			REV__ENSG00000174721|ENST00000311575|FGFBP3	REV__ENSG00000174721|ENST00000311575|FGFBP3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	628.35094	1254.68733	0.45805	0.00028782	-1.3282	-0.0008346	-0.87019	-0.00054678	628.3509751778239	64.259	0.14253	64.33	64.261	64.404	0.071014	0.1245	-9.0608E-05	NaN	2.9952	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56675	+		10615	10354	7002	7054							0.07017088905286073
LGHDAVIQALA	11	Unmodified	_LGHDAVIQALA_					0	0	0		CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant	CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3125	2	554.31148	1106.60841	0.53296	0.00029543	-1.1084	-0.00061439	-0.57542	-0.00031896	554.3110436517809	62.531	0.23892	62.531	62.421	62.66	0					11	8	2	0	0	0	0.39744	1	14139	14139		4.897	0.95262	1	86602			10616	102	7003	7055	14648	14648					0.059368168803075605
LGHEEDYAL	9	Unmodified	_LGHEEDYAL_					0	0	0		ENST00000524899.1_1_11:67051750-67052658:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000100077|ENST00000324198|GRK3;ENSG00000173020|ENST00000308595|GRK2	ENST00000524899.1_1_11:67051750-67052658:+|nuORF	ENST00000524899.1_1_11:67051750-67052658:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7427978515625	2	523.743096	1045.47164	-0.33852	-0.0001773	0.049452	2.59E-05	-0.28907	-0.0001514	523.7430028953104	42.704	1.0903	42.704	42.454	43.544	0					97	37	4	0	0	0	0.05573	1	8134	8134		42.095	18.946	1	816990			10617	1154	7004	7056	14649	14649					-0.04927717070063409
LGHEEDYAL	9	Unmodified	_LGHEEDYAL_					0	0	0		ENST00000524899.1_1_11:67051750-67052658:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000100077|ENST00000324198|GRK3;ENSG00000173020|ENST00000308595|GRK2	ENST00000524899.1_1_11:67051750-67052658:+|nuORF	ENST00000524899.1_1_11:67051750-67052658:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.742919921875	2	523.743096	1045.47164	-0.27848	-0.00014585	0.18946	9.9229E-05	-0.089023	-4.6625E-05	523.7431119525478	42.602	0.90258	42.692	42.492	43.395	0.089764					86	33	5	0	0	0	0.05573	2	7936	7936;7985		42.095	19.102	1	744420			10618	1154	7004	7056	14650;14651	14650					-0.04927717070063409
LGHGQRVQQ	9	Unmodified	_LGHGQRVQQ_					0	0	0			REV__nc|ENSG00000103356|Q5JPH6-2|EARS2	REV__nc|ENSG00000103356|Q5JPH6-2|EARS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7795104980469	2	511.778139	1021.54173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.067	1	35.067	34.567	35.567	0								0	0	0	0.28527	1	5806	5806		2.0598	0	1		+		10619	12768	7005	7057	14652	14652					0.031816261090853004
LGHYGHFH	8	Unmodified	_LGHYGHFH_					0	0	0		chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|23	chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|23	chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|23	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.2319030761719	2	484.230294	966.446034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.837	1	37.837	37.337	38.337	0								0	0	0	0.38822	1	6641	6641		0.79363	0	1				10620	173	7006	7058	14653	14653					-0.038531020111463476
LGIQPVIDKLR	11	Unmodified	_LGIQPVIDKLR_					0	0	0		ENST00000556894.1_1_14:59791074-59792827:+|nuORF;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;DAAM1|p.F380Sfs*26|1|0.12|ENSG00000100592|chr14:59326040-59326040|T/-|frameshift_variant;nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	ENST00000556894.1_1_14:59791074-59792827:+|nuORF	ENST00000556894.1_1_14:59791074-59792827:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3912353515625	2	626.392805	1250.77106	0.2871	0.00017983	-1.7102	-0.0010712	-1.4231	-0.0008914	626.8941280095111	107.83	0.083298	107.85	107.8	107.88	0.022224					27	11	3	0	0	0	0.40453	1	27612	27612		3.2813	0.78282	1	31399000			10621	1208	7007	7059	14654	14654					0.15570200282309088
LGIWIYSYSNS	11	Unmodified	_LGIWIYSYSNS_					0	0	0			REV__ENSG00000143954|ENST00000272324|REG3G	REV__ENSG00000143954|ENST00000272324|REG3G	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88226318359375	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.615	1	92.615	92.115	93.115	0								0	0	0	0.34068	1	23299	23299		0.50596	0.23694	1		+		10622	9482	7008	7060	14655	14655					-0.009546375306626942
LGKAGRAR	8	Unmodified	_LGKAGRAR_					0	0	0		tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	414.7617492675781	2	414.761761	827.508969	0.096035	3.9832E-05	-0.027312	-1.1328E-05	0.068723	2.8503E-05	414.76169279696745	83.606	1.044	83.628	83.251	84.295	0.021751					105	37	4	0	0	0	0.54097	1	20494	20494		0.69038	0	1	3853000			10623	13673	7009	7061	14656	14656					0.08831463776880355
LGKKQLIRRI	10	Unmodified	_LGKKQLIRRI_					0	0	0			REV__tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	REV__tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.9164428710938	2	612.916781	1223.81901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.16	1	109.18	108.68	109.68	0.019402								0	0	0	0.33892	1	27910	27910		1.4819	0	1		+		10624	13289	7010	7062	14657	14657					0.21605318993033507
LGMMPVFFVL	10	Unmodified	_LGMMPVFFVL_					0	0	0			REV__ENSG00000184698|ENST00000642046|OR51M1	REV__ENSG00000184698|ENST00000642046|OR51M1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3115234375	2	577.311049	1152.60755	0.34354	0.00019833	-0.20163	-0.0001164	0.14191	8.1926E-05	577.3108512909348	94.621	0.38714	94.659	94.5	94.887	0.038086					25	15	2	0	0	0	0.3939	1	23793	23793		12.532	0	1	116760	+		10625	10643	7011	7063	14658	14658					0.03734562915406059
LGNEPFWSL	9	Unmodified	_LGNEPFWSL_					0	0	0			REV__FAM83C|p.R464W|1|0.22|ENSG00000125998|chr20:35287389-35287389|G/A|missense_variant	REV__FAM83C|p.R464W|1|0.22|ENSG00000125998|chr20:35287389-35287389|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7443237304688	2	531.766374	1061.5182	0.40781	0.00021686	-2.0707	-0.0011011	-1.6629	-0.00088426	532.2670948815279	62.454	0.1593	62.454	62.314	62.473	0					6	5	2	0	0	0	0.24929	1	14113	14113		9.3831	1.473	1	166280	+		10626	12655	7012	7064	14659	14659					-0.010102324480840252
LGNHRSGRMS	10	Unmodified	_LGNHRSGRMS_					0	0	0			REV__nc|ENSG00000029534|P16157-14|ANK1	REV__nc|ENSG00000029534|P16157-14|ANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7811279296875	2	557.780356	1113.54616	0.2968	0.00016555	-1.5997	-0.0008923	-1.3029	-0.00072675	557.7799624331745	51.89	1.8734	51.89	51.239	53.113	0					206	65	5	0	0	0	0.38104	1	11062	11062		13.906	0	1	2896500	+		10627	8008	7013	7065	14660	14660					-0.006072327396395849
LGPEEWEL	8	Unmodified	_LGPEEWEL_					0	0	0			REV__ENST00000552176.2_17:6916465-6916567:+|nuORF	REV__ENST00000552176.2_17:6916465-6916567:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7367858886719	2	486.737283	971.460012	-0.038034	-1.8512E-05	0.38131	0.0001856	0.34328	0.00016709	486.7373642261601	71.981	1.0002	72.036	71.566	72.566	0.055939					58	35	2	0	0	0	0.52924	1	16936	16936		8.5933	2.2392	1	161740	+		10628	12441	7014	7066	14661	14661					-0.026859140933765957
LGPLGLPDAL	10	Unmodified	_LGPLGLPDAL_					0	0	0			REV__AHDC1|p.K586Nfs*37|1|0.33|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	REV__AHDC1|p.K586Nfs*37|1|0.33|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.716064453125	2	483.286943	964.559333	0.23544	0.00011378	-0.11267	-5.4454E-05	0.12276	5.9329E-05	483.2867631118274	68.093	0.1914	68.156	68.089	68.28	0.063507					8	6	2	0	0	0	0.31616	1	15669	15669		10.074	0.6908	1	34657	+		10629	7701	7015	7067	14662	14662					0.07563528591356317
LGPLPHAAV	9	Unmodified	_LGPLPHAAV_					0	0	0		ENST00000477241.1_1_2:239037864-239040370:+|nuORF;nc|ENSG00000144488|Q6ZVH7-3|ESPNL;nc|ENSG00000144488|Q6ZVH7-2|ESPNL;ENSG00000144488|ENST00000343063|ESPNL	ENST00000477241.1_1_2:239037864-239040370:+|nuORF	ENST00000477241.1_1_2:239037864-239040370:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7608337402344	2	437.760895	873.507237	0.30174	0.00013209	-0.1615	-7.0698E-05	0.14024	6.1391E-05	437.7607138654721	63.707	1.187	63.778	63.563	64.75	0.071018					82	41	3	0	0	0	0.038949	1	14326	14326		45.75	0	1	1212600			10630	3213	7016	7068	14663	14663					0.06542409968255924
LGQREAIEAF	10	Unmodified	_LGQREAIEAF_					0	0	0		nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370|SMARCA1	nc|ENSG00000102038|P28370|SMARCA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8218994140625	2	567.301113	1132.58767	0.46828	0.00026565	3.2649	0.0018522	3.7332	0.0021178	567.3022641379247	70.007	0.38638	70.007	69.704	70.09	0					15	13	2	0	0	0	0.31585	1	16366	16366		10.824	2.9138	1	75890			10631	1290	7017	7069	14664	14664					0.026682265006456873
LGRLLKGKK	9	Unmodified	_LGRLLKGKK_					0	0	0		ENST00000265044.6_1_3:156260720-156260924:-|nuORF	ENST00000265044.6_1_3:156260720-156260924:-|nuORF	ENST00000265044.6_1_3:156260720-156260924:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8529968261719	2	506.853119	1011.69168	-0.12201	-6.184E-05	-0.13344	-6.7634E-05	-0.25545	-0.00012947	506.85295430011547	112.14	1.2356	112.14	111.92	113.16	0					352	141	4	0	0	0	0.33704	2	28735	28735;28774		1.8442	1.1539	1	8677500			10632	5893	7018	7070	14665;14666	14665					0.18630598118841135
LGSERWQR	8	Unmodified	_LGSERWQR_					0	0	0		ENST00000436464.1_2_1:32223098-32226449:-|nuORF	ENST00000436464.1_2_1:32223098-32226449:-|nuORF	ENST00000436464.1_2_1:32223098-32226449:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.728271484375	2	516.27269	1030.53083	0.21793	0.00011251	-1.8099	-0.00093442	-1.592	-0.0008219	516.2716841794984	36.017	0.63741	36.017	35.765	36.402	0					54	25	3	0	0	0	0.3576	1	6095	6095		4.756	0	1	58411			10633	6507	7019	7071	14667	14667					0.016782237348024864
LGSLKRLLTT	10	Unmodified	_LGSLKRLLTT_					0	0	0			REV__ENST00000485486.1_1_X:48334728-48336416:+|nuORF	REV__ENST00000485486.1_1_X:48334728-48336416:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.360107421875	2	551.353148	1100.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.8	1	111.82	111.32	112.32	0.014595								0	0	0	0.3327	1	28496	28496		8.7454	0.58988	1		+		10634	12120	7020	7072	14668	14668					0.1454255332816956
LGSLWRRPPL	10	Unmodified	_LGSLWRRPPL_					0	0	0			REV__ENST00000395863.7_1_20:55841273-55841597:-|nuORF	REV__ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.856201171875	2	597.858932	1193.70331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.492	1	87.52	87.02	88.02	0.028								0	0	0	0.33487	1	21583	21583		6.2058	0.9089	1		+		10635	11720	7021	7073	14669	14669					0.11420795142180395
LGSVTPFVL	9	Unmodified	_LGSVTPFVL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.7756042480469	2	466.776211	931.537869	0.54032	0.00025221	-0.71507	-0.00033378	-0.17475	-8.1569E-05	466.7756842042429	82.333	0.36369	82.333	82.17	82.534	0					21	12	3	0	0	0	0.21398	1	20204	20204		16.942	4.4107	1	79610	+		10636	10783	7022	7074	14670	14670					0.06936143562666075
LGSVTPFVL	9	Unmodified	_LGSVTPFVL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	466.776211	931.537869	0.54032	0.00025221	-0.71507	-0.00033378	-0.17475	-8.1569E-05	466.7756842042429	82.333	0.36369	82.333	82.17	82.534	0	-0.015432	-0.00037205	NaN	16.942	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79610	+		10637	10783	7022	7074							0.06936143562666075
LGSVTPFVL	9	Unmodified	_LGSVTPFVL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	466.776211	931.537869	0.10635	4.964E-05	-0.0070271	-3.2801E-06	0.099319	4.636E-05	466.7762560459896	82.342	0.34356	82.364	82.161	82.504	0.021744	0.015432	0.00028895	NaN	16.942	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109540	+		10638	10783	7022	7074							0.06936143562666075
LGTAAYWAL	9	Unmodified	_LGTAAYWAL_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2553405761719	2	483.258185	964.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.799	1	36.799	36.299	37.299	0								0	0	0	0.23884	1	6328	6328		11.64	2.8949	1				10639	4074	7023	7075	14671	14671					0.01814686385796449
LGTAAYWAL	9	Unmodified	_LGTAAYWAL_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2565612792969	2	483.258185	964.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.869	1	36.869	36.369	37.369	0								0	0	0	0.23884	1	6349	6349		11.64	2.8949	1				10640	4074	7023	7075	14672	14672					0.01814686385796449
LGTCRLGWAYY	11	Unmodified	_LGTCRLGWAYY_					0	0	0		ENSG00000182508|ENST00000371968|LHFPL1	ENSG00000182508|ENST00000371968|LHFPL1	ENSG00000182508|ENST00000371968|LHFPL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8821105957031	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.322	1	89.322	88.822	89.822	0								0	0	0	0.34083	1	22296	22296		0.45452	0	1				10641	4878	7024	7076	14673	14673					-0.016068539630168743
LGTRLPAQSP	10	Unmodified	_LGTRLPAQSP_					0	0	0		ENST00000397728.7_1_21:47609326-47609845:-|nuORF	ENST00000397728.7_1_21:47609326-47609845:-|nuORF	ENST00000397728.7_1_21:47609326-47609845:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.2584838867188	2	520.298373	1038.58219	0.36588	0.00019037	-1.2763	-0.00066407	-0.91045	-0.00047371	520.2979331785994	87.442	0.37299	87.442	87.291	87.664	0					15	13	2	0	0	0	0.31811	1	21690	21690		2.9952	0.69251	1	60874			10642	6350	7025	7077	14674	14674					0.064445477088384
LGTVQQKR	8	Unmodified	_LGTVQQKR_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2799377441406	2	465.279983	928.545414	0.58574	0.00027253	-0.67053	-0.00031198	-0.084785	-3.9449E-05	465.2796180781723	83.594	0.81258	83.594	83.341	84.154	0					47	27	2	0	0	0	0.53423	1	20554	20554		5.2307	0.47466	1	224700			10643	2061	7026	7078	14675	14675					0.07828295882950442
LGTVQQKR	8	Unmodified	_LGTVQQKR_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.2798767089844	2	465.279983	928.545414	0.083182	3.8703E-05	0.012095	5.6276E-06	0.095277	4.433E-05	465.27984246087146	83.57	0.88866	83.592	83.304	84.192	0.021744					60	31	3	0	0	0	0.53817	1	20413	20413		2.5775	0	1	199730			10644	2061	7026	7078	14676	14676					0.07828295882950442
LGVAYSFLF	9	Unmodified	_LGVAYSFLF_					0	0	0			REV__ENST00000460560.5_1_7:140055471-140082350:-|nuORF	REV__ENST00000460560.5_1_7:140055471-140082350:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7763366699219	2	508.776211	1015.53787	0.27362	0.00013921	0.074323	3.7814E-05	0.34795	0.00017703	508.77624493716496	88.85	1.481	88.85	88.402	89.883	0					142	59	4	0	0	0	0.14718	1	22370	22370		24.674	1.5255	1	2597400	+		10645	9788	7027	7079	14677	14677					0.03072143562656038
LGVISSLKSE	10	Unmodified	_LGVISSLKSE_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-6|SYNE1	REV__nc|ENSG00000131018|Q8NF91-6|SYNE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.80126953125	2	516.800414	1031.58628	0.016245	8.3956E-06	1.0931	0.0005649	1.1093	0.0005733	516.8012128054494	33.34	0.67214	33.414	33.209	33.881	0.074322					58	27	3	0	0	0	0.42335	1	5149	5149		9.3831	0.035688	1	124940	+		10646	9075	7028	7080	14678	14678					0.07174592411888625
LGYLENTNV	9	Unmodified	_LGYLENTNV_					0	0	0		CCDC73|p.T895Lfs*8|1|0.12|ENSG00000186714|chr11:32613635-32613635|T/-|frameshift_variant;ENSG00000186714|ENST00000335185|CCDC73	CCDC73|p.T895Lfs*8|1|0.12|ENSG00000186714|chr11:32613635-32613635|T/-|frameshift_variant	CCDC73|p.T895Lfs*8|1|0.12|ENSG00000186714|chr11:32613635-32613635|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7431640625	2	511.761289	1021.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.981	1	50.981	50.481	51.481	0								0	0	0	0.16903	1	10611	10611		22.736	4.5899	1				10647	109	7029	7081	14679	14679					-0.001868401733418068
LGYLLLGLL	9	Unmodified	_LGYLLLGLL_					0	0	0		ENSG00000173338|ENST00000340313|KCNK7	ENSG00000173338|ENST00000340313|KCNK7	ENSG00000173338|ENST00000340313|KCNK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.8179626464844	2	487.817879	973.621205	0.09493	4.6309E-05	-0.039125	-1.9086E-05	0.055805	2.7223E-05	487.81782155482676	102.75	0.33575	102.75	102.71	103.04	0					43	23	2	0	0	0	0.02311	1	26460	26460		56.048	0	1	279610			10648	4544	7030	7082	14680	14680					0.13333880010532084
LGYLLLGLL	9	Unmodified	_LGYLLLGLL_					0	0	0		ENSG00000173338|ENST00000340313|KCNK7	ENSG00000173338|ENST00000340313|KCNK7	ENSG00000173338|ENST00000340313|KCNK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.81793212890625	2	487.817879	973.621205	0.2679	0.00013068	0.060097	2.9317E-05	0.32799	0.00016	487.81782821652365	102.52	0.5338	102.56	102.12	102.65	0.040909					87	36	3	0	0	0	0.02311	1	26106	26106		56.048	0	1	244330			10649	4544	7030	7082	14681	14681					0.13333880010532084
LGYLLLGLL	9	Unmodified	_LGYLLLGLL_					0	0	0		ENSG00000173338|ENST00000340313|KCNK7	ENSG00000173338|ENST00000340313|KCNK7	ENSG00000173338|ENST00000340313|KCNK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.3189697265625	2	487.817879	973.621205	0.25764	0.00012568	-0.06426	-3.1347E-05	0.19338	9.4334E-05	487.81773763532414	102.66	0.37244	102.7	102.64	103.02	0.040909					51	30	3	0	0	0	0.02311	1	26187	26187		56.048	0	1	230000			10650	4544	7030	7082	14682	14682					0.13333880010532084
LGYLSHMSSSI	11	Unmodified	_LGYLSHMSSSI_					0	0	0			REV__ENSG00000141232|ENST00000499247|TOB1	REV__ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7955322265625	2	597.794806	1193.57506	0.45828	0.00027396	0.84801	0.00050694	1.3063	0.00078089	597.7947680369579	92.078	0.95177	92.078	91.815	92.767	0					83	35	3	0	0	0	0.25898	3	23094	23094;23138;23188		22.736	4.0943	1	575100	+		10651	9388	7031	7083	14683;14684;14685	14683					-0.013985529538786068
LGYLSHMSSSI	11	Unmodified	_LGYLSHMSSSI_					0	0	0			REV__ENSG00000141232|ENST00000499247|TOB1	REV__ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7952880859375	2	597.794806	1193.57506	0.30205	0.00018057	1.158	0.00069224	1.4601	0.00087281	597.7949342099969	91.989	0.89674	92.025	91.774	92.671	0.03653					93	31	4	0	0	0	0.25898	2	22981	22981;23037		22.736	3.3743	1	427120	+		10652	9388	7031	7083	14686;14687	14686					-0.013985529538786068
LGYLSHMSSSI	11	Unmodified	_LGYLSHMSSSI_					0	0	0			REV__ENSG00000141232|ENST00000499247|TOB1	REV__ENSG00000141232|ENST00000499247|TOB1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	597.794806	1193.57506	0.45828	0.00027396	0.84801	0.00050694	1.3063	0.00078089	597.7947680369579	92.078	0.95177	92.078	91.815	92.767	0	0.026681	-0.0002022	NaN	22.736	83	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575100	+		10653	9388	7031	7083							-0.013985529538786068
LGYNLFLLTF	10	Unmodified	_LGYNLFLLTF_					0	0	0			REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF	REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.819091796875	2	600.8368	1199.65905	0.46023	0.00027653	-1.2868	-0.00077313	-0.82652	-0.0004966	600.835947922553	100.85	0.63982	100.85	100.41	101.05	0					62	36	2	0	0	0	0.44246	6	25713	25713;25753;25794;25804;25851;25863		6.2058	0	1	94209	+		10654	12635	7032	7084	14688;14689;14690;14691;14692;14693	14688					0.06720346205315764
LGYNLFLLTF	10	Unmodified	_LGYNLFLLTF_					0	0	0			REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF	REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8180541992188	2	600.8368	1199.65905	0.53759	0.00032301	-1.0644	-0.00063952	-0.52678	-0.00031651	600.8359837670503	100.7	0.53796	100.74	100.55	101.09	0.042839					46	33	2	0	0	0	0.45794	1	25678	25678		3.2813	0	1	80020	+		10655	12635	7032	7084	14694	14694					0.06720346205315764
LGYTHALSL	9	Unmodified	_LGYTHALSL_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.768798828125	2	487.768917	973.523281	0.26264	0.00012811	0.1018	4.9652E-05	0.36444	0.00017776	487.7688511001194	68.286	0.5766	68.349	68.192	68.768	0.063507					38	21	2	0	0	0	0.27332	1	15841	15841		10.074	0	1	243640	+		10656	9656	7033	7085	14695	14695					0.03546071414530161
LGYVPPVIP	9	Unmodified	_LGYVPPVIP_					0	0	0			REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.889892578125	2	477.786579	953.558604	-0.18655	-8.9133E-05	-3.5404	-0.0016915	-3.7269	-0.0017807	477.7847557791979	49.028	0.47078	49.105	48.841	49.312	0.076603					25	16	2	0	0	0	0.25416	1	9850	9850		5.2307	0.47466	1	75323	+		10657	8035	7034	7086	14696	14696					0.07996733942331957
LGYVPPVIP	9	Unmodified	_LGYVPPVIP_					0	0	0			REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	477.786579	953.558604	-0.075168	-3.5914E-05	-4.2635	-0.002037	-4.3387	-0.002073	477.7845209205956	49.089	0.33567	49.089	48.917	49.253	0	-0.0077345	-0.00033108	NaN	5.2307	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97713	+		10658	8035	7034	7086							0.07996733942331957
LHAATSKN	8	Unmodified	_LHAATSKN_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.219482421875	2	421.229959	840.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.051	1	20.051	19.551	20.551	0								0	0	0	0.38822	1	1503	1503		0.6015	0	1				10659	3579	7035	7087	14697	14697					0.018760585491349957
LHAFIAQALCL	11	Unmodified	_LHAFIAQALCL_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;nc|ENSG00000112584|Q96EK7-3|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.333984375	2	600.333901	1198.65325	0.47691	0.00028631	0.22144	0.00013294	0.69835	0.00041924	600.333882791866	88.093	1.9448	88.093	87.402	89.347	0					202	75	3	0	0	0	0.3917	1	21959	21959		6.2058	0.9089	1	484250			10660	1765	7036	7088	14698	14698					0.06186924422013362
LHAFMGFNIL	10	Unmodified	_LHAFMGFNIL_					0	0	0		ENST00000355068.4_1_17:7213473-7213746:+|nuORF	ENST00000355068.4_1_17:7213473-7213746:+|nuORF	ENST00000355068.4_1_17:7213473-7213746:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.80859375	2	581.807519	1161.60049	0.64674	0.00037628	1.4325	0.00083346	2.0793	0.0012097	581.8082365692952	69.5	0.442	69.5	69.319	69.761	0					35	14	3	0	0	0	0.38104	1	16290	16290		13.906	2.4113	1	367000			10661	6118	7037	7089	14699	14699					0.02614966359215032
LHAGFEECFA	10	Unmodified	_LHAGFEECFA_					0	0	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.826904296875	2	562.247492	1122.48043	0.29084	0.00016352	-0.01828	-1.0278E-05	0.27256	0.00015324	562.748741474997	46.812	0.28392	46.812	46.744	47.028	0					16	10	2	0	0	0	0.31771	1	9396	9396		4.3292	0	1	74553	+		10662	9690	7038	7090	14700	14700					-0.07591066705231242
LHALGDSFAGL	11	Unmodified	_LHALGDSFAGL_					0	0	0			REV__ENST00000485743.1_1_11:5247788-5248251:-|nuORF	REV__ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.9925537109375	2	550.790381	1099.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.496	1	53.496	52.996	53.996	0								0	0	0	0.30512	1	11377	11377		13.042	4.2971	1		+		10663	11026	7039	7091	14701	14701					0.02040841471944077
LHAQPHHL	8	Unmodified	_LHAQPHHL_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7591552734375	2	476.759218	951.503883	-0.00061226	-2.919E-07	-1.5158	-0.00072269	-1.5165	-0.00072298	476.75841895570574	51.067	0.40017	51.137	50.909	51.31	0.069874					24	15	2	0	0	0	0.48651	1	10489	10489		14.582	5.2343	1	49177			10664	5116	7040	7092	14702	14702					0.0261915991427486
LHAQPHHL	8	Unmodified	_LHAQPHHL_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	476.759218	951.503883	-0.090468	-4.3132E-05	-1.485	-0.00070801	-1.5755	-0.00075114	476.7584245674166	51.157	0.40443	51.157	50.922	51.327	0	0.0099275	1.704E-05	NaN	14.582	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71141			10665	5116	7040	7092							0.0261915991427486
LHCLCDPFK	9	Unmodified	_LHCLCDPFK_					0	0	0			REV__ENST00000286149.8_1_16:21730760-21737890:+|nuORF	REV__ENST00000286149.8_1_16:21730760-21737890:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.78857421875	2	538.256805	1074.49906	0.23084	0.00012425	-0.76993	-0.00041442	-0.53909	-0.00029017	538.2564415374766	34.005	0.46339	34.081	33.902	34.365	0.076248					26	17	2	0	0	0	0.25051	1	5386	5386		7.9102	1.187	1	37859	+		10666	11305	7041	7093	14703	14703					-0.03521228335011983
LHCLEQNKE	9	Unmodified	_LHCLEQNKE_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2867431640625	2	557.271498	1112.52844	0.77128	0.00042981	4.2759	0.0023828	5.0472	0.0028126	557.2735840317987	97.184	0.33445	97.225	97.138	97.473	0.040855					19	15	2	0	0	0	0.24767	1	24546	24546		13.042	0.80181	1	48564	+		10667	8006	7042	7094	14704	14704					-0.023319927851844113
LHCLPPSKP	9	Unmodified	_LHCLPPSKP_					0	0	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2718811035156	2	496.273312	990.532072	0.43549	0.00021612	-1.0671	-0.00052956	-0.63159	-0.00031344	496.2714406055614	47.9	0.94987	47.9	47.707	48.656	0					68	32	4	0	0	0	0.19398	2	9659	9659;9711		19.257	5.3509	1	201210			10668	6163	7043	7095	14705;14706	14705					0.03642721779351632
LHCLPPSKP	9	Unmodified	_LHCLPPSKP_					0	0	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.27166748046875	2	496.273312	990.532072	0.63399	0.00031463	-1.211	-0.00060096	-0.57696	-0.00028633	496.2713449520047	47.851	0.64032	47.931	47.685	48.325	0.080032					58	23	4	0	0	0	0.19398	2	9497	9497;9542		19.257	3.4098	1	227160			10669	6163	7043	7095	14707;14708	14707					0.03642721779351632
LHEDRILAME	10	Unmodified	_LHEDRILAME_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.295654296875	2	613.81353	1225.61251	0.44625	0.00027392	4.4074	0.0027053	4.8537	0.0029793	613.8157021189868	80.667	0.36542	80.69	80.485	80.851	0.023605					16	12	2	0	0	0	0.31219	1	19471	19471		17.113	4.0704	1	94150			10670	4461	7044	7096	14709	14709					0.008725383117280217
LHEERGMLYF	10	Unmodified	_LHEERGMLYF_					0	0	0			REV__ENST00000264033.5_1_11:119171432-119171528:+|nuORF	REV__ENST00000264033.5_1_11:119171432-119171528:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.2802429199219	3	432.213141	1293.61759	0.44252	0.00019126	0.56434	0.00024392	1.0069	0.00043518	432.2133223626303	56.554	2.0268	56.554	56.19	58.217	0					112	73	2	0	0	0	0.31851	1	12573	12573		0.77653	0.77653	1	255710	+		10671	11248	7045	7097	14710	14710					-0.017471578256390785
LHEYFPEM	8	Oxidation (M)	_LHEYFPEM(Oxidation (M))_		LHEYFPEM(1)		LHEYFPEM(43)	0	0	1		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2342529296875	2	541.236593	1080.45863	0.24251	0.00013125	-3.8576	-0.0020879	-3.6151	-0.0019566	541.234250000311	35.265	0.59398	35.344	35.142	35.736	0.078827					54	22	4	0	0	0	0.1928	1	5738	5738		42.968	16.084	1	64506			10672	1788	7046	7098	14711	14711		106			-0.07837871453784828
LHFLSAQN	8	Unmodified	_LHFLSAQN_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.7603454589844	2	465.245609	928.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.52	1	73.52	73.02	74.02	0								0	0	0	0.38822	1	17480	17480		4.3292	0	1				10673	3032	7047	7099	14712	14712					0.009566315832444161
LHGQKKLSW	9	Unmodified	_LHGQKKLSW_					0	0	0		nc|ENSG00000103888|Q8WUJ3-2|CEMIP;ENSG00000103888|ENST00000394685|CEMIP	nc|ENSG00000103888|Q8WUJ3-2|CEMIP	nc|ENSG00000103888|Q8WUJ3-2|CEMIP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2904663085938	2	548.816733	1095.61891	-0.050494	-2.7712E-05	-0.43137	-0.00023674	-0.48186	-0.00026445	548.8166800996514	43.546	0.76761	43.546	43.296	44.063	0					60	27	3	0	0	0	0.20845	1	8361	8361		21.747	0	1	198810			10674	1388	7048	7100	14713	14713					0.07492844325406622
LHGSSDLEL	9	Unmodified	_LHGSSDLEL_					0	0	0			REV__ENSG00000147697|ENST00000276708|GSDMC	REV__ENSG00000147697|ENST00000276708|GSDMC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7458190917969	2	485.745639	969.476725	-0.095484	-4.6381E-05	-0.085738	-4.1647E-05	-0.18122	-8.8028E-05	485.74556813852206	39.06	0.54335	39.06	38.89	39.433	0					42	19	3	0	0	0	0.26684	1	7013	7013		10.824	0	1	110220	+		10675	9578	7049	7101	14714	14714					-0.00923413207442536
LHGSSYLPS	9	Unmodified	_LHGSSYLPS_					0	0	0		ENST00000322310.9_1_9:140084392-140084518:+|nuORF	ENST00000322310.9_1_9:140084392-140084518:+|nuORF	ENST00000322310.9_1_9:140084392-140084518:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.76116943359375	2	480.742899	959.471246	0.12298	5.912E-05	0.75512	0.00036302	0.8781	0.00042214	480.7430063336157	53.224	0.12885	53.289	53.222	53.351	0.06543					8	5	2	0	0	0	0.25174	1	11151	11151		7.2892	0.56607	1	27862			10676	6035	7050	7102	14715	14715					-0.010110919992371237
LHHGHPLTL	9	Unmodified	_LHHGHPLTL_					0	0	0			REV__ENST00000595681.5_1_19:6754625-6763810:-|nuORF	REV__ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7874145507812	2	512.787976	1023.5614	0.39023	0.00020011	-0.84308	-0.00043232	-0.45285	-0.00023221	512.7872503344537	57.89	0.37752	57.89	57.65	58.027	0					19	12	2	0	0	0	0.2446	1	12685	12685		11.64	1.5664	1	76660	+		10677	8976	7051	7103	14716	14716					0.0505600211985211
LHHHRSLV	8	Unmodified	_LHHHRSLV_					0	0	0			REV__ENSG00000008311|ENST00000417368|AASS	REV__ENSG00000008311|ENST00000417368|AASS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2768249511719	2	499.785767	997.556982	-0.15629	-7.811E-05	-1.7146	-0.00085695	-1.8709	-0.00093506	499.7845764115285	43.156	0.32848	43.156	42.999	43.327	0					15	10	2	0	0	0	0.53817	1	8288	8288		2.5775	0	1	27740	+		10678	7961	7052	7104	14717	14717					0.05810537696947904
LHHQPLWNN	9	Unmodified	_LHHQPLWNN_					0	0	0			REV__PLG|p.H307Ifs*64|1|0.1|ENSG00000122194|chr6:160718425-160718425|C/-|frameshift_variant	REV__PLG|p.H307Ifs*64|1|0.1|ENSG00000122194|chr6:160718425-160718425|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3087158203125	2	579.793789	1157.57303	0.48656	0.0002821	1.1107	0.00064395	1.5972	0.00092606	580.2962234715076	52.796	0.10664	52.863	52.804	52.911	0.067173					5	3	2	0	0	0	0.25579	1	11041	11041		4.3292	0.73274	1	25046	+		10679	12960	7053	7105	14718	14718					0.0005419914318736119
LHIVTQVHCW	10	Unmodified	_LHIVTQVHCW_					0	0	0		ENST00000319074.5_1_14:23567332-23567638:+|nuORF	ENST00000319074.5_1_14:23567332-23567638:+|nuORF	ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.321533203125	2	618.321325	1234.6281	-0.33145	-0.00020495	0.061765	3.8191E-05	-0.26969	-0.00016675	618.3213723666292	71.825	1.2935	71.825	71.53	72.824	0					182	45	5	0	0	0	0.44496	1	17146	17146		5.7319	0.97584	1	12727000			10680	6025	7054	7106	14719	14719					0.02016869619433237
LHKKKKRLAK	10	Unmodified	_LHKKKKRLAK_					0	0	0		nc|ENSG00000169302|Q8WU08-3|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF;nc|ENSG00000152953|Q9NY57-2|STK32B;nc|ENSG00000165752|Q86UX6-2|STK32C;ENSG00000169302|ENST00000397936|STK32A;ENSG00000152953|ENST00000282908|STK32B;ENSG00000165752|ENST00000298630|STK32C	nc|ENSG00000169302|Q8WU08-3|STK32A	nc|ENSG00000169302|Q8WU08-3|STK32A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.4315795898438	2	625.432599	1248.85064	-0.28266	-0.00017678	-0.15052	-9.4142E-05	-0.43318	-0.00027092	625.432488667872	111.88	0.36746	111.88	111.77	112.14	0					60	44	2	0	0	0	0.47288	1	28621	28621		0.45834	0.057624	1	1380600			10681	3510	7055	7107	14720	14720					0.2361731174698889
LHKRKEKD	8	Unmodified	_LHKRKEKD_					0	0	0			REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.3115234375	2	527.311815	1052.60908	0.05182	2.7325E-05	0.068763	3.626E-05	0.12058	6.3585E-05	527.3117508971361	34.894	0.47018	34.894	34.734	35.205	0					31	16	3	0	0	0	0.53926	1	5780	5780		1.8442	0.19162	1	51247	+		10682	10345	7056	7108	14721	14721					0.08487656320039605
LHKRKEKD	8	Unmodified	_LHKRKEKD_					0	0	0			REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2774658203125	2	527.311815	1052.60908	0.045086	2.3774E-05	-0.048828	-2.5748E-05	-0.0037425	-1.9734E-06	527.311733995812	34.816	0.58826	34.892	34.688	35.276	0.076244					41	24	3	0	0	0	0.3576	1	5590	5590		4.3292	0.38484	1	91001	+		10683	10345	7056	7108	14722	14722					0.08487656320039605
LHLACTRSYA	10	Unmodified	_LHLACTRSYA_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3270874023438	2	567.789858	1133.56516	0.29743	0.00016888	4.4795	0.0025434	4.7769	0.0027123	568.2937878703679	52.796	0.12287	52.863	52.788	52.911	0.067173					6	4	2	0	0	0	0.31551	1	11013	11013		11.64	3.047	1	47112			10684	7563	7057	7109	14723	14723					0.003723038314092264
LHLFCFFGF	9	Unmodified	_LHLFCFFGF_					0	0	0			REV__ENST00000436679.2_1_11:73840908-73844654:-|nuORF	REV__ENST00000436679.2_1_11:73840908-73844654:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.816162109375	2	565.778231	1129.54191	0.30555	0.00017287	-0.20957	-0.00011857	0.095977	5.4301E-05	565.7780615203224	88.261	0.37805	88.291	88.11	88.488	0.030037					21	13	2	0	0	0	0.237	1	21782	21782		14.582	3.4672	1	98651	+		10685	11866	7058	7110	14724	14724					-0.017680902152733324
LHLFGYLA	8	Unmodified	_LHLFGYLA_					0	0	0		tr|U7SNG6|U7SNG6_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01841PE=4SV=1	tr|U7SNG6|U7SNG6_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01841PE=4SV=1	tr|U7SNG6|U7SNG6_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01841PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.1015319824219	2	467.263271	932.511988	-0.46666	-0.00021805	-0.71546	-0.00033431	-1.1821	-0.00055236	467.2627513306507	41.042	0.49873	41.042	40.881	41.38	0					21	17	2	0	0	0	0.3576	1	7645	7645		6.3541	0	1	28476			10686	13512	7059	7111	14725	14725					0.043032941110254797
LHLFGYLA	8	Unmodified	_LHLFGYLA_					0	0	0		tr|U7SNG6|U7SNG6_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01841PE=4SV=1	tr|U7SNG6|U7SNG6_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01841PE=4SV=1	tr|U7SNG6|U7SNG6_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01841PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	467.263271	932.511988	-0.47185	-0.00022048	-0.31943	-0.00014926	-0.79128	-0.00036973	467.26300136231544	40.922	0.44154	41.012	40.854	41.295	0.089645	-0.015124	0.00028818	NaN	6.3541	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19496			10687	13512	7059	7111							0.043032941110254797
LHLHDENI	8	Unmodified	_LHLHDENI_					0	0	0		RPGRIP1L|p.R56H|1|0.42|ENSG00000103494|chr16:53696214-53696214|C/T|missense_variant	RPGRIP1L|p.R56H|1|0.42|ENSG00000103494|chr16:53696214-53696214|C/T|missense_variant	RPGRIP1L|p.R56H|1|0.42|ENSG00000103494|chr16:53696214-53696214|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7527770996094	2	495.753798	989.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.066	1	73.066	72.566	73.566	0								0	0	0	0.38822	1	17341	17341		2.8892	0	1				10688	13352	7060	7112	14726	14726					-0.0021228725066748666
LHMIDLEIQ	9	Unmodified	_LHMIDLEIQ_					0	0	0		ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8162231445312	2	556.294442	1110.57433	0.11307	6.29E-05	-0.10405	-5.7884E-05	0.009017	5.0161E-06	556.2943587052771	42.835	0.83157	42.925	42.65	43.482	0.089764					83	30	4	0	0	0	0.27332	1	8044	8044		10.074	0	1	526210			10689	4587	7061	7113	14727	14727					0.02346652397068283
LHMQLIRH	8	Unmodified	_LHMQLIRH_					0	0	0		ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	ENSG00000197782|ENST00000683561|ZNF780A	ENSG00000197782|ENST00000683561|ZNF780A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7849731445312	2	524.297653	1046.58075	0.26805	0.00014054	0.061004	3.1985E-05	0.32906	0.00017252	524.297662309647	53.424	0.59976	53.424	53.139	53.739	0					32	24	2	0	0	0	0.3576	1	11287	11287		2.8892	0	1	95842			10690	5321	7062	7114	14728	14728					0.05932635139129161
LHNSLAPV	8	Unmodified	_LHNSLAPV_					0	0	0			REV__ENST00000496359.5_1_10:81565841-81574436:-|nuORF	REV__ENST00000496359.5_1_10:81565841-81574436:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.74224853515625	2	425.742702	849.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.899	1	71.955	71.455	72.455	0.055939								0	0	0	0.38822	1	16831	16831		3.9444	1.3669	1		+		10691	12185	7063	7115	14729	14729					0.04009533071575788
LHNTLVGP	8	Unmodified	_LHNTLVGP_					0	0	0			REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.74188232421875	2	425.742702	849.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.618	1	71.676	71.176	72.176	0.058578								0	0	0	0.38822	1	16744	16744		4.756	0.42677	1		+		10692	9439	7064	7116	14730	14730					0.04009533071575788
LHPGEIPR	8	Unmodified	_LHPGEIPR_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7612609863281	2	459.761426	917.5083	-0.31046	-0.00014274	0.21714	9.9831E-05	-0.093323	-4.2906E-05	459.7614474320257	40.657	0.52098	40.747	40.546	41.067	0.089645					45	19	3	0	0	0	0.46914	1	7353	7353		16.942	1.0951	1	199280			10693	3425	7065	7117	14731	14731					0.04624624337179739
LHPSAEMVL	9	Unmodified	_LHPSAEMVL_					0	0	0		ENST00000460219.2_1_6:36937722-36937803:-|nuORF	ENST00000460219.2_1_6:36937722-36937803:-|nuORF	ENST00000460219.2_1_6:36937722-36937803:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7717590332031	2	498.762778	995.511002	0.48758	0.00024319	-0.36251	-0.00018081	0.12507	6.2382E-05	498.7625330739285	47.28	0.49606	47.28	47.144	47.64	0					25	16	2	0	0	0	0.20367	1	9580	9580		18.135	0	1	128940			10694	6603	7066	7118	14732	14732					0.013067116798310963
LHQLLLLLLI	10	Unmodified	_LHQLLLLLLI_					0	0	0		MYEOV|p.H301Q|1|0.69|ENSG00000172927|chr11:69296353-69296353|C/A|missense_variant	MYEOV|p.H301Q|1|0.69|ENSG00000172927|chr11:69296353-69296353|C/A|missense_variant	MYEOV|p.H301Q|1|0.69|ENSG00000172927|chr11:69296353-69296353|C/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.90625	2	594.907559	1187.80057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.69	1	111.69	111.19	112.19	0								0	0	0	0.33979	1	28587	28587		0.45834	0	1				10695	7436	7067	7119	14733	14733					0.21417764298485054
LHQMWLSW	8	Unmodified	_LHQMWLSW_					0	0	0		nc|ENSG00000105355|O60664-2|PLIN3;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-2|PLIN3	nc|ENSG00000105355|O60664-2|PLIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7716674804688	2	550.770937	1099.52732	-0.51189	-0.00028193	2.0875	0.0011497	1.5756	0.00086781	550.7718990614513	41.744	0.33535	41.744	41.575	41.91	0					21	12	2	0	0	0	0.52924	1	7791	7791		8.5933	0.43775	1	172520			10696	1463	7068	7120	14734	14734					-0.018461623634038915
LHQQHGTLSH	10	Unmodified	_LHQQHGTLSH_					0	0	0			REV__ENST00000342427.6_1_20:32332990-32336802:+|nuORF	REV__ENST00000342427.6_1_20:32332990-32336802:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.29296875	2	579.294153	1156.57375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.887	1	47.887	47.387	48.387	0								0	0	0	0.33711	1	9674	9674		3.5965	1.5367	1		+		10697	11468	7069	7121	14735	14735					0.0017299379223914002
LHRDIKDEN	9	Unmodified	_LHRDIKDEN_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7620239257812	2	570.293819	1138.57309	-0.10944	-6.2412E-05	0.045494	2.5945E-05	-0.063944	-3.6467E-05	570.2939224304066	30.625	1.6898	30.701	30.386	32.075	0.075403					267	87	5	0	0	0	0.34646	1	4280	4280		0.6015	0	1	1654200			10698	2836	7070	7122	14736	14736					0.00934154352535188
LHRPDHPV	8	Unmodified	_LHRPDHPV_					0	0	0		nc|ENSG00000144455|Q8NBK3-2|SUMF1;nc|ENSG00000144455|Q8NBK3-4|SUMF1;nc|ENSG00000144455|Q8NBK3-5|SUMF1;ENSG00000144455|ENST00000272902|SUMF1;nc|ENSG00000144455|Q8NBK3-3|SUMF1	nc|ENSG00000144455|Q8NBK3-2|SUMF1	nc|ENSG00000144455|Q8NBK3-2|SUMF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.1007385253906	2	485.764501	969.514448	0.1186	5.7613E-05	0.77739	0.00037763	0.89599	0.00043524	485.76477739876213	88.263	0.84795	88.293	88.023	88.871	0.030037					63	33	3	0	0	0	0.3576	1	21928	21928		2.5775	0	1	616900			10699	3210	7071	7123	14737	14737					0.028471425687030205
LHRSPFLF	8	Unmodified	_LHRSPFLF_					0	0	0		ENST00000294189.10_2_3:52029896-52029950:-|nuORF	ENST00000294189.10_2_3:52029896-52029950:-|nuORF	ENST00000294189.10_2_3:52029896-52029950:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7749938964844	2	508.787444	1015.56034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.394	1	89.394	88.894	89.894	0								0	0	0	0.38822	1	22318	22318		10.183	0.83596	1				10700	5953	7072	7124	14738	14738					0.05317787750948355
LHRSPFLF	8	Unmodified	_LHRSPFLF_					0	0	0		ENST00000294189.10_2_3:52029896-52029950:-|nuORF	ENST00000294189.10_2_3:52029896-52029950:-|nuORF	ENST00000294189.10_2_3:52029896-52029950:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.77630615234375	2	508.787444	1015.56034	0.18155	9.2369E-05	1.8587	0.00094566	2.0402	0.001038	508.7880839087698	89.343	0.30016	89.376	89.273	89.573	0.032265					15	10	2	0	0	0	0.47778	1	22173	22173		15.768	4.1279	1	65797			10701	5953	7072	7124	14739	14739					0.05317787750948355
LHSEEASHPL	10	Unmodified	_LHSEEASHPL_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2748413085938	2	560.275095	1118.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.98	1	33.98	33.48	34.48	0								0	0	0	0.33443	1	5479	5479		6.7232	0.99131	1		+		10702	9991	7073	7125	14740	14740					-0.01888936913087491
LHSLAHGP	8	Unmodified	_LHSLAHGP_					0	0	0		nc|ENSG00000175600|Q9HAC7-2|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT	nc|ENSG00000175600|Q9HAC7-2|SUGCT	nc|ENSG00000175600|Q9HAC7-2|SUGCT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2278137207031	2	416.22722	830.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.276	1	52.344	51.844	52.844	0.067173								0	0	0	0.38822	1	10870	10870		2.5775	0	1				10703	7562	7074	7126	14741	14741					0.01788379757340408
LHSPNVGALH	10	Unmodified	_LHSPNVGALH_					0	0	0			REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF	REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7828979492188	2	522.78289	1043.55123	0.038695	2.0229E-05	-0.70244	-0.00036722	-0.66374	-0.00034699	522.7821577499573	35.033	1.0635	35.112	34.857	35.92	0.078827					100	40	4	0	0	0	0.11192	1	5684	5684		43.858	3.9086	1	850780	+		10704	12092	7075	7127	14742	14742					0.031193943946163927
LHSQAKATHRF	11	Unmodified	_LHSQAKATHRF_					0	0	0			REV__ENST00000341287.8_1_2:209030465-209035714:-|nuORF	REV__ENST00000341287.8_1_2:209030465-209035714:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3524780273438	2	648.352003	1294.68945	-0.40025	-0.00025951	3.4993	0.0022688	3.0991	0.0020093	648.3543045924488	40.993	0.46352	41.083	40.902	41.365	0.089645					28	16	2	0	0	0	0.4147	1	7532	7532		0.96228	0.56156	1	42122	+		10705	11462	7076	7128	14743	14743					0.05389517643061481
LHSSSNNF	8	Unmodified	_LHSSSNNF_					0	0	0			REV__ENSG00000173757|ENST00000293328|STAT5B	REV__ENSG00000173757|ENST00000293328|STAT5B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.20989990234375	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.969	1	79	78.5	79.5	0.030159								0	0	0	0.38822	1	18989	18989		2.5775	0.27475	1		+		10706	8989	7077	7129	14744	14744					-0.05213122210182064
LHSYTFLPF	9	Unmodified	_LHSYTFLPF_					0	0	0		ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENST00000484496.5_1_7:128032984-128040541:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7924194335938	2	562.792392	1123.57023	0.017223	9.693E-06	1.457	0.00081998	1.4742	0.00082967	562.7924816364123	72.137	0.76991	72.137	71.948	72.718	0					80	26	4	0	0	0	0.21398	1	17133	17133		16.942	3.0362	1	808110			10707	6774	7078	7130	14745	14745					0.013389309656531623
LHSYTFLPF	9	Unmodified	_LHSYTFLPF_					0	0	0		ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENST00000484496.5_1_7:128032984-128040541:-|nuORF	ENST00000484496.5_1_7:128032984-128040541:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7927856445312	2	562.792392	1123.57023	0.19489	0.00010969	1.6122	0.00090731	1.8071	0.001017	562.7923865231072	72.04	0.80086	72.096	71.893	72.694	0.055931					87	27	5	0	0	0	0.25979	1	16934	16934		11.64	0.81637	1	688620			10708	6774	7078	7130	14746	14746					0.013389309656531623
LHTDKLKPLI	10	Unmodified	_LHTDKLKPLI_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|97|2|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|97|2|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3716430664062	2	589.368798	1176.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.71	1	114.73	114.23	115.23	0.013336								0	0	0	0.33984	1	29179	29179		0.40072	0	1		+		10709	12679	7079	7131	14747	14747					0.14175126362283663
LHTLLHSGEEG	11	Unmodified	_LHTLLHSGEEG_					0	0	0		ENST00000507522.1_1_5:256531-256657:+|nuORF	ENST00000507522.1_1_5:256531-256657:+|nuORF	ENST00000507522.1_1_5:256531-256657:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.800048828125	2	596.801477	1191.5884	-0.14861	-8.8689E-05	-2.0283	-0.0012105	-2.1769	-0.0012992	596.8000419488953	107.09	0.19109	107.09	107.04	107.23	0					17	15	2	0	0	0	0.31094	1	27617	27617		1.3295	0	1	33694			10710	6893	7080	7132	14748	14748					0.0002702114970816183
LHTMQGKLIML	11	Unmodified	_LHTMQGKLIML_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.8624877929688	2	642.861969	1283.70938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.65	1	107.65	107.15	108.15	0								0	0	0	0.32709	1	27790	27790		5.2969	1.7004	1		+		10711	8321	7081	7133	14749	14749					0.0788780926718573
LHTMQGKLIML	11	Unmodified	_LHTMQGKLIML_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.35986328125	2	642.861969	1283.70938	0.18479	0.00011879	-1.6106	-0.0010354	-1.4259	-0.00091663	643.3622315572521	108.43	0.30131	108.46	108.39	108.69	0.022224					64	42	2	0	0	0	0.38057	2	27740	27740;27743		8.7454	3.8484	1	2850100	+		10712	8321	7081	7133	14750;14751	14750					0.0788780926718573
LHTSEKPFAC	10	Unmodified	_LHTSEKPFAC_					0	0	0		nc|ENSG00000063587|Q9NSD4-2|ZNF275;ENSG00000063587|ENST00000650114|ZNF275	nc|ENSG00000063587|Q9NSD4-2|ZNF275	nc|ENSG00000063587|Q9NSD4-2|ZNF275	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3270263671875	2	566.776416	1131.53828	0.1291	7.3172E-05	2.4544	0.0013911	2.5835	0.0014643	566.7775991677847	52.731	0.36105	52.731	52.584	52.945	0					13	12	2	0	0	0	0.31585	1	11167	11167		10.824	2.9138	1	81315			10713	661	7082	7134	14752	14752					-0.02222804779762555
LHVAQFQEFL	10	Unmodified	_LHVAQFQEFL_					0	0	0		ENSG00000158169|ENST00000289081|FANCC	ENSG00000158169|ENST00000289081|FANCC	ENSG00000158169|ENST00000289081|FANCC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.2223815917969	3	411.220513	1230.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.356	1	48.356	47.856	48.856	0								0	0	0	0.32976	1	9815	9815		12.175	1.8595	1				10714	3684	7083	7135	14753	14753					0.03361389914425672
LHVENSVEIE	10	Unmodified	_LHVENSVEIE_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3174438476562	2	584.79586	1167.57717	0.54864	0.00032084	3.0911	0.0018077	3.6397	0.0021285	584.7970302557118	47.045	0.51319	47.045	46.858	47.372	0					21	17	2	0	0	0	0.31761	1	9408	9408		5.2969	1.7004	1	46914			10715	4419	7084	7136	14754	14754					8.199055582736037E-05
LHVKKKKA	8	Unmodified	_LHVKKKKA_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.3270263671875	2	476.326737	950.63892	-0.0039696	-1.8908E-06	0.41103	0.00019578	0.40706	0.00019389	476.3267520639898	112.22	1.6309	112.23	111.98	113.62	0.014595					338	205	4	0	0	0	0.54081	3	28604	28604;28638;28676		0.79363	0	1	4447800			10716	5328	7085	7137	14755;14756;14757	14755					0.161626400560408
LHVKKKKA	8	Unmodified	_LHVKKKKA_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	476.326737	950.63892	-0.31195	-0.00014859	0.66421	0.00031638	0.35226	0.00016779	476.32688327733524	112.2	1.3185	112.2	111.89	113.2	0	-0.017014	0.00011048	NaN	0.79363	324	153	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5661100			10717	5328	7085	7137							0.161626400560408
LHVRLSVEQ	9	Unmodified	_LHVRLSVEQ_					0	0	0			REV__ENSG00000168301|ENST00000404589|KCTD6	REV__ENSG00000168301|ENST00000404589|KCTD6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2343139648438	2	540.811648	1079.60874	0.12907	6.9801E-05	0.091599	4.9538E-05	0.22067	0.00011934	540.8118288639007	35.192	0.53484	35.192	34.975	35.51	0					26	18	2	0	0	0	0.25281	1	5875	5875		6.7232	0	1	34773	+		10718	10150	7086	7138	14758	14758					0.07212236600184951
LHVRLSVEQ	9	Unmodified	_LHVRLSVEQ_					0	0	0			REV__ENSG00000168301|ENST00000404589|KCTD6	REV__ENSG00000168301|ENST00000404589|KCTD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.8119506835938	2	540.811648	1079.60874	0.24653	0.00013333	0.30935	0.0001673	0.55589	0.00030063	540.8118444389312	35.108	0.44041	35.187	35.016	35.457	0.078827					29	18	2	0	0	0	0.30005	1	5702	5702		6.7232	0	1	42597	+		10719	10150	7086	7138	14759	14759					0.07212236600184951
LHVRLSVEQ	9	Unmodified	_LHVRLSVEQ_					0	0	0			REV__ENSG00000168301|ENST00000404589|KCTD6	REV__ENSG00000168301|ENST00000404589|KCTD6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2342529296875	2	540.811648	1079.60874	0.24653	0.00013333	0.30935	0.0001673	0.55589	0.00030063	540.8118444389312	35.108	0.44041	35.187	35.016	35.457	0.078827					29	18	2	0	0	0	0.25921	1	5738	5738		1.4819	0	1	42597	+		10720	10150	7086	7138	14760	14760					0.07212236600184951
LHVVWNRLGR	10	Unmodified	_LHVVWNRLGR_					0	0	0		nc|ENSG00000138395|Q96Q40-4|CDK15;nc|ENSG00000138395|Q96Q40-3|CDK15;nc|ENSG00000138395|Q96Q40-5|CDK15;ENSG00000138395|ENST00000652192|CDK15	nc|ENSG00000138395|Q96Q40-4|CDK15	nc|ENSG00000138395|Q96Q40-4|CDK15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3663330078125	2	625.367456	1248.72036	-0.039573	-2.4748E-05	-0.60949	-0.00038115	-0.64906	-0.0004059	625.3673314330842	103.6	0.27484	103.6	103.43	103.71	0					36	29	2	0	0	0	0.47288	1	26588	26588		0.45834	0.057624	1	169960			10721	2909	7087	7139	14761	14761					0.1059471574797044
LHWEPIRD	8	Unmodified	_LHWEPIRD_					0	0	0		nc|ENSG00000168743|Q6UXI9-2|NPNT;nc|ENSG00000168743|Q6UXI9-5|NPNT;ENSG00000168743|ENST00000379987|NPNT;nc|ENSG00000168743|Q6UXI9-4|NPNT;nc|ENSG00000168743|Q6UXI9-6|NPNT;nc|ENSG00000168743|Q6UXI9-3|NPNT	nc|ENSG00000168743|Q6UXI9-2|NPNT	nc|ENSG00000168743|Q6UXI9-2|NPNT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2763061523438	2	533.277441	1064.54033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.773	1	70.773	70.273	71.273	0								0	0	0	0.38822	1	16641	16641		2.3027	0	1				10722	4302	7088	7140	14762	14762					0.010639920203402653
LHWFLFHG	8	Unmodified	_LHWFLFHG_					0	0	0			REV__ENSG00000171608|ENST00000377346|PIK3CD	REV__ENSG00000171608|ENST00000377346|PIK3CD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7179565429688	2	528.774337	1055.53412	-0.10958	-5.7943E-05	1.912	0.001011	1.8024	0.00095305	528.7755975201293	28.89	0.29218	28.968	28.86	29.152	0.078289					38	22	2	0	0	0	0.3576	1	3892	3892		0.79363	0	1	16047	+		10723	10267	7089	7141	14763	14763					0.008575185794825302
LHWKMLFH	8	Unmodified	_LHWKMLFH_					0	0	0		ENST00000470041.5_1_1:206136994-206141493:+|nuORF	ENST00000470041.5_1_1:206136994-206141493:+|nuORF	ENST00000470041.5_1_1:206136994-206141493:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2964477539062	2	556.297122	1110.57969	-0.22783	-0.00012674	0.35743	0.00019884	0.1296	7.2095E-05	556.2968950543601	13.679	0.060669	13.679	13.645	13.705	0					10	7	2	0	0	0	0.54199	1	255	255		0	0	1	11528			10724	6660	7090	7142	14764	14764					0.028824207701973137
LHYCLHHVH	9	Unmodified	_LHYCLHHVH_					0	0	0		ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.7847900390625	2	579.78491	1157.55527	-0.017798	-1.0319E-05	-0.3665	-0.00021249	-0.3843	-0.00022281	579.784671308801	32.796	0.32667	32.796	32.658	32.985	0					29	13	3	0	0	0	0.34646	1	5154	5154		0.6015	0	1	41117			10725	5719	7091	7143	14765	14765					-0.017208393833470836
LHYLRHLTSA	10	Unmodified	_LHYLRHLTSA_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.21563720703125	3	404.22789	1209.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.29	1	31.363	30.863	31.863	0.073782								0	0	0	0.33784	1	4558	4558		1.3296	0.55311	1		+		10726	8596	7092	7144	14766	14766					0.06539614382859327
LIAMDPYYY	9	Unmodified	_LIAMDPYYY_					0	0	0		nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3055419921875	2	574.770268	1147.52598	0.47535	0.00027322	-3.0588	-0.0017581	-2.5835	-0.0014849	574.7690471867785	97.063	0.55054	97.063	96.888	97.438	0					34	26	2	0	0	0	0.25504	1	24736	24736		4.756	0	1	87060			10727	5251	7093	7145	14767	14767					-0.04187841242833201
LIAMDPYYY	9	Unmodified	_LIAMDPYYY_					0	0	0		nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.770268	1147.52598	0.45018	0.00025875	-1.9523	-0.0011221	-1.5021	-0.00086339	575.2696248926416	96.658	0.24538	96.698	96.611	96.857	0.039772	-0.18275	0.0010725	NaN	4.756	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61114			10728	5251	7093	7145							-0.04187841242833201
LICNNMVTSTR	11	Unmodified	_LICNNMVTSTR_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3347778320312	2	626.31284	1250.61113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.499	1	89.532	89.032	90.032	0.032257								0	0	0	0.32823	1	22192	22192		4.897	0.70751	1				10729	89	7094	7146	14768	14768					-0.004154190486815423
LICRHRLD	8	Unmodified	_LICRHRLD_					0	0	0		nc|nan|Q5SQH8|C6orf136;ENSG00000204564|ENST00000651131|C6orf136;ENST00000487873.1_1_6:30618866-30620506:+|nuORF;ENST00000488383.5_1_6:30618866-30620689:+|nuORF;nc|nan|Q5SQH8-2|C6orf136;nc|nan|Q5SQH8-3|C6orf136	nc|nan|Q5SQH8|C6orf136	nc|nan|Q5SQH8|C6orf136	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2869262695312	2	513.287285	1024.56002	0.19492	0.00010005	-0.62372	-0.00032015	-0.4288	-0.0002201	513.2868762318052	51.426	0.50002	51.426	51.152	51.652	0					50	16	4	0	0	0	0.50815	1	10805	10805		11.64	0.81637	1	556850			10730	5479	7095	7147	14769	14769					0.04872044759417804
LIDDALVSDSE	11	Unmodified	_LIDDALVSDSE_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.785888671875	2	588.785158	1175.55576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.36	1	106.36	105.86	106.86	0								0	0	0	0.32823	1	27424	27424		4.897	0.56777	1		+		10731	10003	7096	7148	14770	14770					-0.02499230763783089
LIDLDTIDVS	10	Unmodified	_LIDLDTIDVS_					0	0	0		UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2;ENST00000592841.5_1_19:34919394-34922879:+|nuORF	UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant	UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3283081054688	2	552.295162	1102.57577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.65	1	104.69	104.19	105.19	0.034004								0	0	0	0.33681	1	26761	26761		3.9444	0	1				10732	2335	7097	7149	14771	14771					0.02858564966800259
LIDQELLSM	9	Oxidation (M)	_LIDQELLSM(Oxidation (M))_		LIDQELLSM(1)		LIDQELLSM(66)	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2788696289062	2	539.278457	1076.54236	0.44425	0.00023957	-0.013259	-7.1501E-06	0.43099	0.00023242	539.2783058986681	67.737	1.3521	67.737	67.397	68.749	0					74	49	2	0	0	0	0.010235	1	15692	15692		66.457	22.598	1	208720			10733	1940	7098	7150	14772	14772		116			0.0071523992323818675
LIDQELLSM	9	Oxidation (M)	_LIDQELLSM(Oxidation (M))_		LIDQELLSM(1)		LIDQELLSM(130)	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2785034179688	2	539.278457	1076.54236	0.61394	0.00033108	0.27259	0.000147	0.88653	0.00047809	539.278371259647	64.797	0.62228	64.797	64.601	65.224	0					50	22	3	0	0	0	7.0837E-07	1	14804	14804		128.93	32.648	1	416640			10734	1940	7098	7150	14773	14773		116			0.0071523992323818675
LIDQELLSM	9	Oxidation (M)	_LIDQELLSM(Oxidation (M))_		LIDQELLSM(1)		LIDQELLSM(120)	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2787475585938	2	539.278457	1076.54236	0.60744	0.00032758	0.26716	0.00014407	0.8746	0.00047165	539.2783920409305	64.748	0.73186	64.817	64.587	65.318	0.068916					57	27	3	0	0	0	0.00022794	1	14648	14648		117.76	32.489	1	354250			10735	1940	7098	7150	14774	14774		116			0.0071523992323818675
LIEAEASSLR	10	Unmodified	_LIEAEASSLR_					0	0	0		ENST00000562945.2_1_16:34428410-34428635:-|nuORF	ENST00000562945.2_1_16:34428410-34428635:-|nuORF	ENST00000562945.2_1_16:34428410-34428635:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.8013305664062	2	544.800946	1087.58734	0.15784	8.5994E-05	0.32157	0.00017519	0.47942	0.00026119	544.801202906344	19.244	0.32458	19.34	19.201	19.526	0.095232					57	34	3	0	0	0	0.46083	1	1252	1252		2.7352	0	1	34054			10736	7165	7099	7151	14775	14775					0.04704806780796389
LIEELFGMI	9	Unmodified	_LIEELFGMI_					0	0	0			REV__ENSG00000068097|ENST00000184956|HEATR6	REV__ENSG00000068097|ENST00000184956|HEATR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3087158203125	2	532.788461	1063.56237	0.52566	0.00028007	3.8031	0.0020263	4.3288	0.0023063	532.7905024805224	60.189	0.37385	60.189	59.989	60.363	0					20	13	2	0	0	0	0.20367	1	13465	13465		18.135	3.5533	1	131140	+		10737	8128	7100	7152	14776	14776					0.03313035653877705
LIEHPYGICV	10	Unmodified	_LIEHPYGICV_					0	0	0			REV__ENSG00000144130|ENST00000688554|NT5DC4	REV__ENSG00000144130|ENST00000688554|NT5DC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.308349609375	2	572.296985	1142.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.135	1	75.135	74.635	75.635	0								0	0	0	0.26649	1	17974	17974		21.747	0	1		+		10738	9490	7101	7153	14777	14777					0.013829562596811229
LIELFFHLD	9	Unmodified	_LIELFFHLD_					0	0	0		ENST00000508281.2_1_5:137219022-137219178:-|nuORF	ENST00000508281.2_1_5:137219022-137219178:-|nuORF	ENST00000508281.2_1_5:137219022-137219178:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.81298828125	2	573.813325	1145.6121	0.24406	0.00014005	-0.11429	-6.5581E-05	0.12977	7.4465E-05	573.8130495190996	78.555	0.47997	78.555	78.335	78.815	0					33	16	3	0	0	0	0.25979	1	19019	19019		11.64	0	1	149850			10739	6898	7102	7154	14778	14778					0.04511486654178043
LIELFFHLD	9	Unmodified	_LIELFFHLD_					0	0	0		ENST00000508281.2_1_5:137219022-137219178:-|nuORF	ENST00000508281.2_1_5:137219022-137219178:-|nuORF	ENST00000508281.2_1_5:137219022-137219178:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	573.813325	1145.6121	0.38836	0.00022285	-0.0041345	-2.3724E-06	0.38423	0.00022048	573.8130951826322	78.563	0.4404	78.593	78.346	78.787	0.030151	0.018671	5.9981E-05	NaN	11.64	34	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164350			10740	6898	7102	7154							0.04511486654178043
LIETSISVL	9	Unmodified	_LIETSISVL_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7908630371094	2	487.792058	973.569563	0.57932	0.00028259	-2.1727	-0.0010598	-1.5933	-0.00077722	487.79095872763526	81.851	0.57629	81.851	81.489	82.066	0					30	19	2	0	0	0	0.33704	1	20009	20009		1.8442	0	1	150700			10741	1499	7103	7155	14779	14779					0.08172091525932501
LIETSISVL	9	Unmodified	_LIETSISVL_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.28192138671875	2	487.792058	973.569563	0.24202	0.00011806	-1.855	-0.00090483	-1.6129	-0.00078678	487.7912370004359	81.782	0.71675	81.803	81.475	82.192	0.021866					34	25	2	0	0	0	0.25875	1	19865	19865		1.8442	0	1	129320			10742	1499	7103	7155	14780	14780					0.08172091525932501
LIETSISVL	9	Unmodified	_LIETSISVL_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	487.792058	973.569563	0.57932	0.00028259	-2.1727	-0.0010598	-1.5933	-0.00077722	487.79095872763526	81.851	0.57629	81.851	81.489	82.066	0	0.023651	-0.00016042	NaN	4.3292	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150700			10743	1499	7103	7155							0.08172091525932501
LIFCIKRFTK	10	Unmodified	_LIFCIKRFTK_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8788452148438	2	634.881019	1267.74748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.38	1	115.38	114.88	115.88	0								0	0	0	0.33979	1	29432	29432		0.45834	0.057624	1				10744	4310	7104	7156	14781	14781					0.12432063244114033
LIFGCAPGFV	10	Unmodified	_LIFGCAPGFV_					0	0	0			REV__nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	REV__nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2710571289062	2	512.270238	1022.52592	0.045784	2.3454E-05	1.4555	0.0007456	1.5013	0.00076906	512.2709380464544	105.82	0.69343	105.82	105.56	106.25	0					94	67	2	0	0	0	0.46554	1	27267	27267		1.8442	1.0506	1	60120	+		10745	10406	7105	7157	14782	14782					0.01556203547829682
LIFSTDDFF	9	Unmodified	_LIFSTDDFF_					0	0	0		ENST00000472298.1_1_13:32981593-33002081:-|nuORF;nc|ENSG00000139597|Q5TBK1-2|N4BP2L1;ENSG00000139597|ENST00000380130|N4BP2L1	ENST00000472298.1_1_13:32981593-33002081:-|nuORF	ENST00000472298.1_1_13:32981593-33002081:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2675170898438	2	552.76604	1103.51753	0.16819	9.297E-05	-0.14499	-8.0148E-05	0.023196	1.2822E-05	552.7659447762762	33.093	2.1934	33.167	32.422	34.615	0.074322					239	96	3	0	0	0	0.32112	1	5309	5309		3.9444	0.94915	1	187640			10746	2976	7106	7158	14783	14783					-0.03009071887800019
LIGSVRQGQ	9	Unmodified	_LIGSVRQGQ_					0	0	0			REV__ASAP2-CPSF3|4|fusion	REV__ASAP2-CPSF3|4|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774658203125	2	479.277441	956.540328	0.10733	5.1439E-05	0.10607	5.0836E-05	0.2134	0.00010228	479.2773625245644	76.7	0.89496	76.739	76.313	77.207	0.03923					80	32	3	0	0	0	0.32112	1	18404	18404		3.9444	0.66309	1	425500	+		10747	7722	7107	7159	14784	14784					0.06031992020336929
LIHGHPSYYA	10	Unmodified	_LIHGHPSYYA_					0	0	0			REV__nc|ENSG00000144895|Q9BY44-2|EIF2A	REV__nc|ENSG00000144895|Q9BY44-2|EIF2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3048706054688	2	579.290548	1156.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.95	1	104.95	104.45	105.45	0								0	0	0	0.33648	1	27021	27021		4.3292	0.13973	1		+		10748	9511	7108	7160	14785	14785					-0.005477388081999379
LIHHQWVL	8	Unmodified	_LIHHQWVL_					0	0	0		nc|ENSG00000293416|E5RG02|PRSS46P	nc|ENSG00000293416|E5RG02|PRSS46P	nc|ENSG00000293416|E5RG02|PRSS46P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3006591796875	2	523.300719	1044.58688	0.16583	8.678E-05	-0.34327	-0.00017963	-0.17744	-9.2853E-05	523.3002138428901	86.334	0.40578	86.334	86.179	86.585	0					34	14	3	0	0	0	0.48651	1	21370	21370		14.582	2.9414	1	162580			10749	7638	7109	7161	14786	14786					0.06637476642254114
LIHTSMLMT	9	Unmodified	_LIHTSMLMT_					0	0	0		ENST00000296511.9_1_4:122589480-122589621:-|nuORF	ENST00000296511.9_1_4:122589480-122589621:-|nuORF	ENST00000296511.9_1_4:122589480-122589621:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7730712890625	2	523.772288	1045.53002	0.34879	0.00018269	0.54545	0.00028569	0.89424	0.00046838	523.7725682045561	78.296	0.53949	78.326	78.112	78.651	0.030151					36	18	3	0	0	0	0.12809	1	18782	18782		26.884	0	1	267270			10750	5961	7110	7162	14787	14787					0.009079249792193878
LIILFYQK	8	Unmodified	_LIILFYQK_					0	0	0		ENSG00000183150|ENST00000651487|GPR19	ENSG00000183150|ENST00000651487|GPR19	ENSG00000183150|ENST00000651487|GPR19	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7650146484375	2	519.323328	1036.6321	0.35046	0.000182	-3.9067	-0.0020288	-3.5562	-0.0018468	519.3230840808532	75.175	0.45439	75.219	75.115	75.569	0.044037					32	16	3	0	0	0	0.35042	1	17836	17836		19.439	3.6708	1	110330			10751	4910	7111	7163	14788	14788					0.11525282384786806
LIILFYQK	8	Unmodified	_LIILFYQK_					0	0	0		ENSG00000183150|ENST00000651487|GPR19	ENSG00000183150|ENST00000651487|GPR19	ENSG00000183150|ENST00000651487|GPR19	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	519.323328	1036.6321	0.47597	0.00024718	-1.8734	-0.00097289	-1.3974	-0.00072571	519.323083754839	75.109	0.92793	75.109	74.661	75.589	0	-0.055069	0.00040997	NaN	19.439	52	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199150			10752	4910	7111	7163							0.11525282384786806
LIITYVPY	8	Unmodified	_LIITYVPY_					0	0	0		ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2867126464844	2	491.286411	980.55827	0.38767	0.00019046	0.42332	0.00020797	0.81099	0.00039843	491.28657769605337	96.434	0.42068	96.473	96.344	96.765	0.039772					31	21	2	0	0	0	0.53771	1	24317	24317		2.8892	0.58649	1	64121			10753	5279	7112	7164	14789	14789					0.06721314222477304
LIIWCLSKMR	10	Unmodified	_LIIWCLSKMR_					0	0	0		ENST00000513986.1_1_5:124081915-124082038:-|nuORF	ENST00000513986.1_1_5:124081915-124082038:-|nuORF	ENST00000513986.1_1_5:124081915-124082038:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5750427246094	3	421.575245	1261.70391	-0.18212	-7.6778E-05	-0.009133	-3.8503E-06	-0.19125	-8.0628E-05	421.57520502576835	41.071	1.9481	41.071	39.661	41.609	0					97	69	2	0	0	0	0.47199	1	7358	7358		0.62683	0	1	42526			10754	6925	7113	7165	14790	14790					0.0835213047535035
LIKYFENDF	9	Unmodified	_LIKYFENDF_					0	0	0		ENST00000230565.3_1_6:46135895-46138552:-|nuORF	ENST00000230565.3_1_6:46135895-46138552:-|nuORF	ENST00000230565.3_1_6:46135895-46138552:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.3215942382812	2	594.800414	1187.58628	0.2777	0.00016518	0.71657	0.00042621	0.99427	0.00059139	595.3019045070214	71.542	0.51407	71.542	71.297	71.811	0					24	17	2	0	0	0	0.25051	1	16896	16896		7.9102	0	1	149590			10755	5811	7114	7166	14791	14791					-1.4075880926611717E-05
LILDEFTTL	9	Unmodified	_LILDEFTTL_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3099975585938	2	532.79734	1063.58013	0.072516	3.8636E-05	1.2683	0.00067577	1.3409	0.0007144	532.7978423365228	59.038	0.89039	59.038	58.79	59.68	0					75	33	3	0	0	0	0.22344	1	13234	13234		15.847	0	1	664740			10756	5384	7115	7167	14792	14792					0.05088074180366675
LILIFWFSNLF	11	Unmodified	_LILIFWFSNLF_					0	0	0			REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.60516357421875	3	471.604075	1411.7904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.849	1	68.911	68.411	69.411	0.062126								0	0	0	0.34068	1	15903	15903		0.50596	0	1		+		10757	12065	7116	7168	14793	14793					0.10097156573215216
LILSRRPRR	9	Unmodified	_LILSRRPRR_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000464665.1_1_1:6609704-6614547:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8836669921875	2	583.883273	1165.75199	0.12832	7.4927E-05	0.87546	0.00051117	1.0038	0.00058609	583.8837302032351	111.92	0.5134	111.92	111.82	112.33	0					104	59	2	0	0	0	0.3354	2	28706	28706;28752		2.0598	2.0598	1	1464000			10758	3824	7117	7169	14794;14795	14794					0.17574708501933856
LILSWFLAFLS	11	Unmodified	_LILSWFLAFLS_					0	0	0		ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2572326660156	3	437.256675	1308.7482	0.38542	0.00016853	1.1745	0.00051355	1.5599	0.00068208	437.25720703386963	90.153	0.4182	90.153	90.077	90.495	0					40	17	3	0	0	0	0.41309	2	22584	22584;22638		1.3296	0	1	216570			10759	6527	7118	7170	14796;14797	14796					0.10617181164843714
LILVLLPVAS	10	Unmodified	_LILVLLPVAS_					0	0	0		ENST00000521323.1_1_8:79710258-79717217:-|nuORF;nc|ENSG00000104432|P13232-2|IL7;ENSG00000104432|ENST00000263851|IL7	ENST00000521323.1_1_8:79710258-79717217:-|nuORF	ENST00000521323.1_1_8:79710258-79717217:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.3637084960938	2	519.352086	1036.68962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.19	1	111.2	110.7	111.7	0.015678								0	0	0	0.33877	1	28357	28357		1.6526	1.0511	1				10760	1414	7119	7171	14798	14798					0.1727412459038078
LIMFINQLL	9	Unmodified	_LIMFINQLL_					0	0	0		tr|U7SVB5|U7SVB5_FUSNUCAAXaminoterminalproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01202PE=4SV=1	tr|U7SVB5|U7SVB5_FUSNUCAAXaminoterminalproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01202PE=4SV=1	tr|U7SVB5|U7SVB5_FUSNUCAAXaminoterminalproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01202PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7971801757812	2	552.827921	1103.64129	0.28685	0.00015858	-1.1606	-0.0006416	-0.87374	-0.00048303	552.8288011032488	51.221	0.14299	51.221	51.152	51.295	0					8	4	2	0	0	0	0.25051	1	10672	10672		7.9102	0	1	53509			10761	13626	7120	7172	14799	14799					0.09361307678818775
LINDADWEL	9	Unmodified	_LINDADWEL_					0	0	0		ENST00000470840.5_1_9:131140285-131152010:+|nuORF;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7665405273438	2	544.766571	1087.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.113	1	76.113	75.613	76.613	0								0	0	0	0.084126	1	18276	18276		38.176	3.7738	1				10762	4201	7121	7173	14800	14800					-0.021668575189096373
LINDADWEL	9	Unmodified	_LINDADWEL_					0	0	0		ENST00000470840.5_1_9:131140285-131152010:+|nuORF;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7647705078125	2	544.766571	1087.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.972	1	76.011	75.511	76.511	0.03923								0	0	0	0.04112	1	18074	18074		51.63	18.844	1				10763	4201	7121	7173	14801	14801					-0.021668575189096373
LIPEEFFQF	9	Unmodified	_LIPEEFFQF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2980346679688	2	585.297507	1168.58046	0.50184	0.00029372	0.16521	9.67E-05	0.66705	0.00039042	585.2976063167508	95.911	0.50528	95.911	95.629	96.134	0					45	25	2	0	0	0	0.2125	4	24364	24290;24329;24361;24364		17.113	10.351	1	115450			10764	1955	7122	7174	14802;14803;14804;14805	14805					0.002914939002266692
LIPEEFFQF	9	Unmodified	_LIPEEFFQF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8131713867188	2	585.297507	1168.58046	0.66031	0.00038648	0.04722	2.7638E-05	0.70753	0.00041412	585.2975570487436	95.914	0.52903	95.954	95.67	96.199	0.039772					39	24	2	0	0	0	0.13341	4	24083	24083;24132;24154;24172		26.268	16.194	1	144290			10765	1955	7122	7174	14806;14807;14808;14809	14806					0.002914939002266692
LIPLKCLF	8	Unmodified	_LIPLKCLF_					0	0	0		ENST00000318430.9_1_17:76134666-76137438:+|nuORF	ENST00000318430.9_1_17:76134666-76137438:+|nuORF	ENST00000318430.9_1_17:76134666-76137438:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2308044433594	2	473.793349	945.572146	0.30925	0.00014652	-0.50803	-0.0002407	-0.19879	-9.4183E-05	473.7930122293653	83.614	0.78303	83.614	83.371	84.154	0					37	26	2	0	0	0	0.3576	1	20721	20721		0.79363	0	1	92929			10766	6024	7123	7175	14810	14810					0.09718268449898915
LIPLKCLF	8	Unmodified	_LIPLKCLF_					0	0	0		ENST00000318430.9_1_17:76134666-76137438:+|nuORF	ENST00000318430.9_1_17:76134666-76137438:+|nuORF	ENST00000318430.9_1_17:76134666-76137438:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.230712890625	2	473.793349	945.572146	-0.0061006	-2.8904E-06	-0.045996	-2.1793E-05	-0.052097	-2.4683E-05	473.7931940421836	83.607	0.7543	83.628	83.387	84.142	0.021744					41	26	2	0	0	0	0.3576	1	20535	20535		0.79363	0.79363	1	133820			10767	6024	7123	7175	14811	14811					0.09718268449898915
LIQGEEYSF	9	Unmodified	_LIQGEEYSF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3032836914062	2	543.261122	1084.50769	0.50929	0.00027668	-1.8838	-0.0010234	-1.3745	-0.00074674	543.7628326983636	67.512	0.18823	67.512	67.397	67.586	0					8	6	2	0	0	0	0.20004	1	15662	15662		23.148	8.5667	1	46066			10768	3593	7124	7176	14812	14812					-0.03118259893199138
LIQLSSPLE	9	Unmodified	_LIQLSSPLE_					0	0	0		ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.25347900390625	2	500.289682	998.564812	0.30981	0.00015499	-0.42752	-0.00021388	-0.11771	-5.8889E-05	500.2893504398489	50.299	0.25967	50.372	50.211	50.47	0.07312					14	8	2	0	0	0	0.2418	1	10252	10252		13.906	0	1	58451			10769	5137	7125	7177	14813	14813					0.06547207383175646
LIRVLWRYM	9	Unmodified	_LIRVLWRYM_					0	0	0			REV__ENSG00000163904|ENST00000296257|SENP2	REV__ENSG00000163904|ENST00000296257|SENP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.3677978515625	2	625.365536	1248.71652	0.32857	0.00020548	2.5634	0.0016031	2.892	0.0018085	625.3676348902187	103.51	0.09848	103.55	103.5	103.6	0.03791					14	9	2	0	0	0	0.34704	1	26444	26444		0.52476	0	1	145640	+		10770	9961	7126	7178	14814	14814					0.1021090992990139
LIRVLWRYM	9	Unmodified	_LIRVLWRYM_					0	0	0			REV__ENSG00000163904|ENST00000296257|SENP2	REV__ENSG00000163904|ENST00000296257|SENP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	625.365536	1248.71652	0.32857	0.00020548	2.5634	0.0016031	2.892	0.0018085	625.3676348902187	103.51	0.09848	103.55	103.5	103.6	0.03791	-0.026692	0.0001013	NaN	0.52476	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145640	+		10771	9961	7126	7178							0.1021090992990139
LISTIPSLLH	10	Unmodified	_LISTIPSLLH_					0	0	0			REV__ENST00000478660.6_1_6:45389954-45390311:+|nuORF	REV__ENST00000478660.6_1_6:45389954-45390311:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3326416015625	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.033	1	76.073	75.573	76.573	0.03923								0	0	0	0.33092	1	18093	18093		10.824	4.1008	1		+		10772	12070	7127	7179	14815	14815					0.11167462062576305
LISYAFIFS	9	Unmodified	_LISYAFIFS_					0	0	0		ENSG00000279116|ENST00000624618|OR8D2	ENSG00000279116|ENST00000624618|OR8D2	ENSG00000279116|ENST00000624618|OR8D2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7877197265625	2	530.789318	1059.56408	0.46684	0.00024779	-1.9466	-0.0010332	-1.4797	-0.00078541	530.788096508973	103.33	0.33681	103.37	103.08	103.42	0.03791					44	34	2	0	0	0	0.31496	1	26392	26392		4.756	0	1	64306			10773	5767	7128	7180	14816	14816					0.03668412734123194
LITDADTCP	9	Unmodified	_LITDADTCP_					0	0	0		ENST00000287701.14_1_8:28909738-28909819:+|nuORF	ENST00000287701.14_1_8:28909738-28909819:+|nuORF	ENST00000287701.14_1_8:28909738-28909819:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7204284667969	2	474.720775	947.426998	-0.76135	-0.00036143	-0.29331	-0.00013924	-1.0547	-0.00050067	474.72059913552	41.349	0.41214	41.349	41.197	41.609	0					23	14	2	0	0	0	0.29105	1	7739	7739		7.9102	0	1	73526			10774	5941	7129	7181	14817	14817					-0.04881864207754916
LITDADTCP	9	Unmodified	_LITDADTCP_					0	0	0		ENST00000287701.14_1_8:28909738-28909819:+|nuORF	ENST00000287701.14_1_8:28909738-28909819:+|nuORF	ENST00000287701.14_1_8:28909738-28909819:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.719970703125	2	474.720775	947.426998	-0.6279	-0.00029808	-0.27549	-0.00013078	-0.90338	-0.00042885	474.7205069822636	41.315	0.38549	41.405	41.211	41.596	0.089767					24	14	2	0	0	0	0.29105	1	7559	7559		7.9102	0	1	47914			10775	5941	7129	7181	14818	14818					-0.04881864207754916
LITDILDTF	9	Unmodified	_LITDILDTF_					0	0	0		ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7894287109375	2	525.789515	1049.56448	0.37681	0.00019812	-0.16075	-8.4521E-05	0.21606	0.0001136	525.7893250059136	96.59	0.87525	96.59	96.359	97.235	0					87	42	4	0	0	0	0.00022088	5	24513	24469;24513;24556;24615;24668		136.33	58.184	1	1310100			10776	1380	7130	7182	14819;14820;14821;14822;14823	14820					0.04167787663322997
LITDILDTF	9	Unmodified	_LITDILDTF_					0	0	0		ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.78955078125	2	525.789515	1049.56448	0.31438	0.0001653	-0.076485	-4.0215E-05	0.2379	0.00012508	525.7893787895115	96.658	0.58474	96.698	96.379	96.964	0.039772					75	29	3	0	0	0	6.8107E-09	4	24346	24299;24346;24393;24442		164.52	75.612	1	1133200			10777	1380	7130	7182	14824;14825;14826;14827	14825					0.04167787663322997
LIVYRFIAMI	10	Unmodified	_LIVYRFIAMI_					0	0	0			REV__ENSG00000144136|ENST00000272542|SLC20A1	REV__ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3077392578125	2	619.87012	1237.72569	0.067382	4.1768E-05	-1.2255	-0.00075968	-1.1582	-0.00071791	619.8692260061787	91.944	0.56488	91.944	91.678	92.243	0					41	20	3	0	0	0	0.31829	1	23176	23176		1.8442	0.88196	1	122050	+		10778	9491	7131	7183	14828	14828					0.11633258495589871
LIYFPQNPNR	10	Unmodified	_LIYFPQNPNR_					0	0	0			REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2	REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.3372802734375	2	631.33803	1260.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.271	1	55.336	54.836	55.836	0.065128								0	0	0	0.33892	1	11783	11783		1.4819	0	1		+		10779	9487	7132	7184	14829	14829					0.04160194662972572
LIYLYLID	8	Unmodified	_LIYLYLID_					0	0	0			REV__ENST00000371926.7_1_10:90682987-90683107:+|nuORF	REV__ENST00000371926.7_1_10:90682987-90683107:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2999877929688	2	513.299519	1024.58448	0.60791	0.00031204	0.25294	0.00012983	0.86085	0.00044187	513.2996893944515	98.062	0.35789	98.062	97.91	98.268	0					35	19	2	0	0	0	0.53257	1	24968	24968		6.3541	0	1	65917	+		10780	11602	7133	7185	14830	14830					0.07317583393955829
LIYLYLID	8	Unmodified	_LIYLYLID_					0	0	0			REV__ENST00000371926.7_1_10:90682987-90683107:+|nuORF	REV__ENST00000371926.7_1_10:90682987-90683107:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	513.299519	1024.58448	0.60791	0.00031204	0.25294	0.00012983	0.86085	0.00044187	513.2996893944515	98.062	0.35789	98.062	97.91	98.268	0	0.013219	0.00016724	NaN	6.3541	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65917	+		10781	11602	7133	7185							0.07317583393955829
LKAIKSILT	9	Unmodified	_LKAIKSILT_					0	0	0			REV__tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1	REV__tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8345642089844	2	493.83406	985.653567	0.34857	0.00017214	1.5417	0.00076134	1.8903	0.00093347	493.83472898673233	109.65	0.54836	109.66	109.12	109.67	0.017242					93	63	2	0	0	0	0.33704	1	27989	27989		1.8442	0	1	1823500	+		10782	13070	7134	7186	14831	14831					0.16016667413498453
LKAKGTGGGGL	11	Unmodified	_LKAKGTGGGGL_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.78729248046875	2	479.787641	957.56073	-0.3759	-0.00018035	0.38556	0.00018499	0.009659	4.6343E-06	479.7877144132128	27.023	0.32191	27.11	26.975	27.297	0.0867					36	22	2	0	0	0	0.41892	1	3287	3287		0	0	1	27296			10783	861	7135	7187	14832	14832					0.08025162680178255
LKDWEPSI	8	Unmodified	_LKDWEPSI_					0	0	0		ENST00000514132.1_1_5:11386040-11386076:-|nuORF	ENST00000514132.1_1_5:11386040-11386076:-|nuORF	ENST00000514132.1_1_5:11386040-11386076:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2608642578125	2	494.260925	986.507297	0.46578	0.00023022	-0.33483	-0.00016549	0.13095	6.4724E-05	494.2606559987376	103.78	0.37389	103.81	103.62	104	0.03791					53	37	2	0	0	0	0.53557	1	26469	26469		4.3292	0.38484	1	237830			10784	6926	7136	7188	14833	14833					0.01350365177609092
LKDWGPKN	8	Unmodified	_LKDWGPKN_					0	0	0		nc|ENSG00000105954|Q9HCQ7-2|NPVF;ENSG00000105954|ENST00000222674|NPVF	nc|ENSG00000105954|Q9HCQ7-2|NPVF	nc|ENSG00000105954|Q9HCQ7-2|NPVF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774353027344	2	479.261259	956.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.539	1	79.565	79.065	80.065	0.026436								0	0	0	0.38822	1	19163	19163		7.9102	0.62092	1				10785	1495	7137	7189	14834	14834					0.02797204617331772
LKEAKRFMK	9	Unmodified	_LKEAKRFMK_					0	0	0		ENST00000445692.5_1_2:68762461-68805151:+|nuORF;ENST00000529851.5_1_2:68740776-68805151:+|nuORF;ENSG00000169621|ENST00000303795|APLF	ENST00000445692.5_1_2:68762461-68805151:+|nuORF	ENST00000445692.5_1_2:68762461-68805151:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8421630859375	2	575.841894	1149.66923	0.51788	0.00029822	0.097428	5.6103E-05	0.61531	0.00035432	575.8416443056561	84.489	1.7086	84.512	84.012	85.72	0.023132					156	88	3	0	0	0	0.32112	1	21029	21029		3.9444	0	1	1635200			10786	4347	7138	7190	14835	14835					0.10038630658914371
LKEMFMWWA	9	Unmodified	_LKEMFMWWA_					0	0	0			REV__ENST00000225726.9_1_17:61823269-61823485:-|nuORF	REV__ENST00000225726.9_1_17:61823269-61823485:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2942504882812	2	621.29593	1240.57731	-0.60773	-0.00037758	-0.54524	-0.00033876	-1.153	-0.00071634	621.2955963293883	43.017	0.53139	43.017	42.764	43.296	0					22	17	2	0	0	0	0.33704	1	8198	8198		1.8442	0	1	36599	+		10787	11185	7139	7191	14836	14836					-0.03335795749785575
LKEQGLTE	8	Unmodified	_LKEQGLTE_					0	0	0			REV__ENST00000450021.1_1_2:183936291-183936849:-|nuORF	REV__ENST00000450021.1_1_2:183936291-183936849:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2502746582031	2	459.250557	916.486562	0.85243	0.00039148	-1.9699	-0.00090466	-1.1174	-0.00051318	459.2494381364748	84.853	0.42854	84.853	84.704	85.132	0					33	16	3	0	0	0	0.53614	1	20930	20930		3.9444	0	1	232080	+	+	10788	7833	7140	7192	14837	14837					0.024977747979392007
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2909851074219	2	501.290548	1000.56654	0.77457	0.00038829	-0.082864	-4.1539E-05	0.69171	0.00034675	501.2904008193115	80.898	3.0648	80.898	79.958	83.023	0					366	106	4	0	0	0	0.51415	4	19565	19565;19608;19652;19699		10.824	0	1	2422800			10789	5029	7141	7193	14838;14839;14840;14841	14838					0.06628261191792717
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2910461425781	2	501.290548	1000.56654	0.54985	0.00027564	0.11799	5.9149E-05	0.66785	0.00033478	501.2905139234308	80.889	3.0008	80.913	80.018	83.019	0.023605					358	107	5	0	0	0	0.51415	7	19435	19435;19483;19569;19611;19696;19784;19871		10.824	0	1	2978500			10790	5029	7141	7193	14842;14843;14844;14845;14846;14847;14848	14842					0.06628261191792717
LKEQLLLL	8	Unmodified	_LKEQLLLL_					0	0	0		CPXCR1|p.E88Q|1|0.76|ENSG00000147183|chrX:88753676-88753676|G/C|missense_variant	CPXCR1|p.E88Q|1|0.76|ENSG00000147183|chrX:88753676-88753676|G/C|missense_variant	CPXCR1|p.E88Q|1|0.76|ENSG00000147183|chrX:88753676-88753676|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.3222351074219	2	485.320786	968.627018	-0.30674	-0.00014887	1.5768	0.00076526	1.2701	0.00061639	485.3213774018664	111.98	0.54798	111.98	111.83	112.38	0					79	63	2	0	0	0	0.53494	1	28647	28647		4.756	0	1	1162200			10791	244	7142	7194	14849	14849					0.1414497852219938
LKERHKELEK	10	Unmodified	_LKERHKELEK_					0	0	0			REV__ENST00000332869.5_1_10:60475484-60475616:+|nuORF	REV__ENST00000332869.5_1_10:60475484-60475616:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2579345703125	3	437.257738	1308.75138	0.24424	0.0001068	-0.60813	-0.00026591	-0.36389	-0.00015911	437.5916848010136	93.943	0.79483	93.981	93.793	94.588	0.038086					62	37	2	0	0	0	0.46688	1	23603	23603		1.5923	0.37745	1	366450	+		10792	11046	7143	7195	14850	14850					0.10935824271541605
LKERHKELEK	10	Unmodified	_LKERHKELEK_					0	0	0			REV__ENST00000332869.5_1_10:60475484-60475616:+|nuORF	REV__ENST00000332869.5_1_10:60475484-60475616:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	437.257738	1308.75138	0.57742	0.00025248	-0.9587	-0.0004192	-0.38128	-0.00016672	437.2573825418961	93.995	1.1331	93.995	93.941	95.074	0	0.0071858	-0.0002023	NaN	1.5923	78	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270890	+		10793	11046	7143	7195							0.10935824271541605
LKFFCMSFF	9	Unmodified	_LKFFCMSFF_					0	0	0		ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2797241210938	2	585.279749	1168.54494	0.28044	0.00016413	-0.088875	-5.2017E-05	0.19156	0.00011212	585.2796401200407	31.131	0.84069	31.205	30.892	31.733	0.073782					63	41	2	0	0	0	0.33704	1	4448	4448		1.8442	1.1539	1	26623			10794	4681	7144	7196	14851	14851					-0.03258583152774008
LKFVNLNF	8	Unmodified	_LKFVNLNF_					0	0	0		ENST00000603544.5_2_14:35649921-35735939:+|nuORF	ENST00000603544.5_2_14:35649921-35735939:+|nuORF	ENST00000603544.5_2_14:35649921-35735939:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7899475097656	2	497.789653	993.564752	0.54922	0.00027339	0.12943	6.4429E-05	0.67865	0.00033782	497.789606787686	68.774	0.3414	68.774	68.617	68.958	0					22	13	2	0	0	0	0.40691	1	16050	16050		25.399	2.663	1	108640			10795	7301	7145	7197	14852	14852					0.06771252173848552
LKFVNLNF	8	Unmodified	_LKFVNLNF_					0	0	0		ENST00000603544.5_2_14:35649921-35735939:+|nuORF	ENST00000603544.5_2_14:35649921-35735939:+|nuORF	ENST00000603544.5_2_14:35649921-35735939:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	497.789653	993.564752	0.36121	0.00017981	-0.038203	-1.9017E-05	0.32301	0.00016079	497.78961420242155	68.741	0.4147	68.803	68.639	69.054	0.062119	0.014329	-8.2946E-05	NaN	25.399	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134540			10796	7301	7145	7197							0.06771252173848552
LKFYFHEAL	9	Unmodified	_LKFYFHEAL_					0	0	0		ENSG00000132604|ENST00000254942|TERF2;nc|ENSG00000132604|Q15554-4|TERF2	ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3134765625	2	584.313492	1166.61243	0.20629	0.00012054	0.017127	1.0007E-05	0.22342	0.00013055	584.3133922696259	27.293	0.22481	27.379	27.207	27.432	0.0867					25	15	2	0	0	0	0.33849	1	3353	3353		1.6526	0	1	22465			10797	2582	7146	7198	14853	14853					0.035789063740367055
LKGARRDP	8	Unmodified	_LKGARRDP_					0	0	0		ENST00000317178.9_1_19:58258268-58258442:+|nuORF	ENST00000317178.9_1_19:58258268-58258442:+|nuORF	ENST00000317178.9_1_19:58258268-58258442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7721252441406	2	456.772326	911.530098	0.4826	0.00022044	-0.33902	-0.00015485	0.14358	6.5585E-05	456.7720973915302	84.802	0.68126	84.825	84.631	85.312	0.023132					76	30	4	0	0	0	0.53858	1	20719	20719		2.3027	0	1	1829600			10798	6022	7147	7199	14854	14854					0.07079429085740685
LKGEPPERRIA	11	Unmodified	_LKGEPPERRIA_					0	0	0			REV__ENST00000415031.1_1_1:51984033-52026593:+|nuORF	REV__ENST00000415031.1_1_1:51984033-52026593:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3688354492188	2	633.369861	1264.72517	0.38824	0.0002459	-1.3295	-0.00084207	-0.94127	-0.00059617	633.3687833492754	87.921	0.52417	87.921	87.708	88.232	0					35	18	3	0	0	0	0.41359	1	21874	21874		0.26902	0	1	198450	+		10799	11795	7148	7200	14855	14855					0.10339555100085818
LKHFIAEY	8	Unmodified	_LKHFIAEY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7781677246094	2	510.779285	1019.54402	-0.15244	-7.7865E-05	-0.898	-0.00045868	-1.0504	-0.00053654	510.7787704315397	28.527	0.43443	28.527	28.405	28.84	0					26	19	2	0	0	0	0.53817	1	3916	3916		2.5775	0	1	31457			10800	2655	7149	7201	14856	14856					0.0350266179417531
LKHKLKTPR	9	Unmodified	_LKHKLKTPR_					0	0	0		ENSG00000127666|ENST00000248244|TICAM1	ENSG00000127666|ENST00000248244|TICAM1	ENSG00000127666|ENST00000248244|TICAM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8707275390625	2	560.8693	1119.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.045	1	25.045	24.545	25.545	0								0	0	0	0.29303	1	2863	2863		0.45834	0.45834	1				10801	2372	7150	7202	14857	14857					0.1689738552183826
LKIDHNPF	8	Unmodified	_LKIDHNPF_					0	0	0		EOMES|p.A451T|1|0.22|ENSG00000163508|chr3:27718615-27718615|C/T|missense_variant;nc|ENSG00000136535|Q16650-2|TBR1;nc|ENSG00000163508|O95936-3|EOMES;nc|ENSG00000163508|O95936-2|EOMES;ENSG00000136535|ENST00000389554|TBR1;nc|ENSG00000163508|O95936|EOMES;ENSG00000163508|ENST00000449599|EOMES	EOMES|p.A451T|1|0.22|ENSG00000163508|chr3:27718615-27718615|C/T|missense_variant	EOMES|p.A451T|1|0.22|ENSG00000163508|chr3:27718615-27718615|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.68768310546875	2	492.269084	982.523616	0.29995	0.00014766	0.40312	0.00019844	0.70307	0.0003461	492.26905736300586	57.016	0.20779	57.016	56.857	57.065	0					10	7	2	0	0	0	0.3576	1	12422	12422		2.5775	0	1	58047			10802	2797	7151	7203	14858	14858					0.03165491134370768
LKIIIIPIIKA	11	Unmodified	_LKIIIIPIIKA_					0	0	0		ENST00000377142.4_1_20:21494349-21494634:-|nuORF	ENST00000377142.4_1_20:21494349-21494634:-|nuORF	ENST00000377142.4_1_20:21494349-21494634:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.9447021484375	2	617.946685	1233.87882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.226	1	77.261	76.761	77.761	0.034485								0	0	0	0.34212	1	18460	18460		0	0	1				10803	6252	7152	7204	14859	14859					0.2712319688371281
LKILEPGSWLE	11	Unmodified	_LKILEPGSWLE_					0	0	0		ENST00000587974.1_1_18:43487913-43547205:-|nuORF;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3619384765625	2	642.863546	1283.71254	-0.11089	-7.1285E-05	-3.005	-0.0019318	-3.1159	-0.0020031	643.3627453109241	107.82	0.13979	107.82	107.76	107.9	0					28	22	2	0	0	0	0.31023	1	27828	27828		8.1555	2.4237	1	19490000			10804	3490	7153	7205	14860	14860					0.08203098917215357
LKISPILVL	9	Unmodified	_LKISPILVL_					0	0	0			REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.34722900390625	2	498.346803	994.679054	0.49589	0.00024712	-0.15519	-7.7341E-05	0.34069	0.00016978	498.34664035708926	75.355	0.33291	75.355	75.199	75.532	0					21	12	2	0	0	0	0.16392	1	18057	18057		22.736	0	1	129430	+		10805	13268	7154	7206	14861	14861					0.18150141935939246
LKISPILVL	9	Unmodified	_LKISPILVL_					0	0	0			REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	498.346803	994.679054	0.49589	0.00024712	-0.15519	-7.7341E-05	0.34069	0.00016978	498.34664035708926	75.355	0.33291	75.355	75.199	75.532	0	-0.014273	-0.00018886	NaN	22.736	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129430	+		10806	13268	7154	7206							0.18150141935939246
LKISPILVL	9	Unmodified	_LKISPILVL_					0	0	0			REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.346803	994.679054	0.43129	0.00021493	0.20716	0.00010324	0.63845	0.00031817	498.3468912484265	75.34	0.31635	75.384	75.209	75.525	0.044037	0.014273	0.0001723	NaN	22.736	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150580	+		10807	13268	7154	7206							0.18150141935939246
LKIVYRRFR	9	Unmodified	_LKIVYRRFR_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.17236328125	2	625.895849	1249.77715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.199	1	46.285	45.785	46.785	0.085617								0	0	0	0.2927	1	9037	9037		0.52476	0.12405	1				10808	3252	7155	7207	14862	14862					0.16224763304489898
LKKANKKQNF	10	Unmodified	_LKKANKKQNF_					0	0	0		ENSG00000008118|ENST00000361322|CAMK1G	ENSG00000008118|ENST00000361322|CAMK1G	ENSG00000008118|ENST00000361322|CAMK1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.9153747558594	3	406.915423	1217.72444	0.039014	1.5875E-05	0.02811	1.1438E-05	0.067124	2.7314E-05	406.9154361196014	36.524	2.1942	36.606	36.235	38.43	0.081715					195	83	4	0	0	0	0.45479	1	6220	6220		3.8763	0.28927	1	762900			10809	392	7156	7208	14863	14863					0.1242876045103003
LKKKTLEV	8	Unmodified	_LKKKTLEV_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-3|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.8194885253906	2	479.81841	957.622267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.76	1	103.8	103.3	104.3	0.03791								0	0	0	0.38822	1	26511	26511		0.69038	0	1				10810	5079	7157	7209	14864	14864					0.14176094379422466
LKKLLMENPY	10	Unmodified	_LKKLLMENPY_					0	0	0		ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.7870483398438	2	624.854667	1247.69478	-0.29965	-0.00018724	0.83866	0.00052404	0.53901	0.0003368	624.8551665484936	107.07	0.24725	107.07	106.93	107.17	0					40	25	2	0	0	0	0.46899	1	27587	27587		1.1933	0.59184	1	35295			10811	2824	7158	7210	14865	14865					0.0808406039068359
LKKLVLYL	8	Unmodified	_LKKLVLYL_					0	0	0		ENSG00000104332|ENST00000220772|SFRP1	ENSG00000104332|ENST00000220772|SFRP1	ENSG00000104332|ENST00000220772|SFRP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.8313903808594	2	495.341521	988.668489	0.095868	4.7487E-05	-1.9029	-0.0009426	-1.8071	-0.00089511	495.34065204144866	112.41	0.13143	112.41	112.38	112.51	0					19	14	2	0	0	0	0.54081	1	28800	28800		0.79363	0	1	382000			10812	1408	7159	7211	14866	14866					0.17370159281495035
LKKMFVKAFV	10	Unmodified	_LKKMFVKAFV_					0	0	0			REV__ENST00000481528.1_1_1:52926763-52927313:-|nuORF	REV__ENST00000481528.1_1_1:52926763-52927313:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8720092773438	2	605.872662	1209.73077	0.72164	0.00043722	-1.3107	-0.00079412	-0.58907	-0.0003569	605.8718538020954	94.117	0.65237	94.117	93.914	94.566	0					65	34	3	0	0	0	0.46656	1	23807	23807		1.6526	0	1	359110	+		10813	12090	7160	7212	14867	14867					0.13429562358192015
LKKNAYSPMIV	11	Unmodified	_LKKNAYSPMIV_					0	0	0			REV__ENST00000417647.6_1_5:140031695-140032611:+|nuORF	REV__ENST00000417647.6_1_5:140031695-140032611:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.57550048828125	3	421.90917	1262.70568	-0.16249	-6.8555E-05	1.2912	0.00054477	1.1287	0.00047622	421.9096795239652	40.065	0.62166	40.154	39.634	40.256	0.088566					30	23	2	0	0	0	0.31101	1	7183	7183		0.45452	0.046251	1	30386	+		10814	11805	7161	7213	14868	14868					0.0848346276495704
LKKRLFNFC	9	Unmodified	_LKKRLFNFC_					0	0	0			REV__nc|ENSG00000132906|P55211-2|CASP9	REV__nc|ENSG00000132906|P55211-2|CASP9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8356323242188	2	584.836611	1167.65867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.961	1	40.049	39.549	40.549	0.088562								0	0	0	0.2927	1	7155	7155		0.52476	0	1		+		10815	9133	7162	7214	14869	14869					0.08154648004460796
LKKTKTKTK	9	Unmodified	_LKKTKTKTK_					0	0	0		ENST00000448942.5_1_6:138178656-138178794:-|nuORF	ENST00000448942.5_1_6:138178656-138178794:-|nuORF	ENST00000448942.5_1_6:138178656-138178794:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.3629760742188	2	538.363516	1074.71248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.87	1	111.87	111.37	112.37	0								0	0	0	0.29303	1	28627	28627		0.45834	0	1				10816	6558	7163	7215	14870	14870					0.17811143707831434
LKKTMSGTFLL	11	Unmodified	_LKKTMSGTFLL_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;ENST00000557199.1_1_12:56740507-56742527:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8643798828125	2	619.862492	1237.71043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.62	1	104.65	104.15	105.15	0.034004								0	0	0	0.33281	1	26750	26750		3.2813	1.6287	1				10817	4402	7164	7216	14871	14871					0.10108346907713894
LKKWFGIFAW	10	Unmodified	_LKKWFGIFAW_					0	0	0			REV__ENST00000401424.5_1_11:13299386-13371514:+|nuORF	REV__ENST00000401424.5_1_11:13299386-13371514:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.0584106445312	2	648.368601	1294.72265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.053	1	52.121	51.621	52.621	0.067173								0	0	0	0.33979	1	10802	10802		0.45834	0.057624	1		+		10818	11753	7165	7217	14872	14872					0.08707751433075828
LKLFLYWP	8	Unmodified	_LKLFLYWP_					0	0	0		ENST00000252595.11_1_19:17615396-17615555:+|nuORF	ENST00000252595.11_1_19:17615396-17615555:+|nuORF	ENST00000252595.11_1_19:17615396-17615555:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.330322265625	2	540.318046	1078.62154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.83	1	80.854	80.354	81.354	0.023605								0	0	0	0.38822	1	19555	19555		0.79363	0	1				10819	5840	7166	7218	14873	14873					0.08537299730346604
LKLIFCWR	8	Unmodified	_LKLIFCWR_					0	0	0		WDR72|p.S976F|1|0.3|ENSG00000166415|chr15:53609538-53609538|G/A|missense_variant	WDR72|p.S976F|1|0.3|ENSG00000166415|chr15:53609538-53609538|G/A|missense_variant	WDR72|p.S976F|1|0.3|ENSG00000166415|chr15:53609538-53609538|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.81640625	2	539.815147	1077.61574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.44	1	108.46	107.96	108.96	0.022224								0	0	0	0.38822	1	27755	27755		2.5775	0.27475	1				10820	13769	7167	7219	14874	14874					0.08003877947021465
LKLLEIQL	8	Unmodified	_LKLLEIQL_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.3556823730469	2	485.320786	968.627018	0.028153	1.3663E-05	1.6806	0.00081563	1.7088	0.00082929	485.3214731630935	109.61	0.29978	109.63	109.36	109.66	0.017235					57	30	2	0	0	0	0.3576	1	27965	27965		2.0598	0	1	1162200	+		10821	9424	7168	7220	14875	14875					0.1414497852219938
LKLLISKLKAH	11	Unmodified	_LKLLISKLKAH_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.4267578125	2	632.42919	1262.84383	-0.18658	-0.000118	-3.0918	-0.0019554	-3.2784	-0.0020734	632.426954558126	107.94	0.05201	107.94	107.91	107.96	0					9	4	3	0	0	0	0.41757	1	27848	27848		0.30703	0	1	4582900			10822	681	7169	7221	14876	14876					0.2229195407574025
LKLLISKLKAH	11	Unmodified	_LKLLISKLKAH_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.4284057617188	2	632.42919	1262.84383	-0.18674	-0.0001181	0.19374	0.00012253	0.0070038	4.4294E-06	632.4287073367066	108.28	0.21069	108.28	108.21	108.42	0					40	27	3	0	0	0	0.41757	1	27926	27926		0.30703	0	1	3063400			10823	681	7169	7221	14877	14877					0.2229195407574025
LKLLISKLKAH	11	Unmodified	_LKLLISKLKAH_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.427490234375	2	632.42919	1262.84383	0.26462	0.00016735	-2.2944	-0.001451	-2.0298	-0.0012837	632.4273918762696	108.24	0.13573	108.26	108.15	108.28	0.022224					23	18	2	0	0	0	0.41757	1	27694	27694		0.30703	0	1	3853600			10824	681	7169	7221	14878	14878					0.2229195407574025
LKLLISKLKAH	11	Unmodified	_LKLLISKLKAH_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.4290161132812	2	632.42919	1262.84383	0.26418	0.00016708	-0.29759	-0.0001882	-0.033406	-2.1127E-05	632.4286135772406	108.27	0.16385	108.29	108.24	108.41	0.022224					31	22	2	0	0	0	0.41757	1	27725	27725		0.30703	0	1	4674700			10825	681	7169	7221	14879	14879					0.2229195407574025
LKLLISKLKAH	11	Unmodified	_LKLLISKLKAH_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.4266967773438	2	632.42919	1262.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.83	1	107.85	107.35	108.35	0.022224								0	0	0	0.34125	1	27614	27614		0.30703	0	1				10826	681	7169	7221	14880	14880					0.2229195407574025
LKLLISKLKAH	11	Unmodified	_LKLLISKLKAH_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.429931640625	2	632.42919	1262.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.91	1	107.93	107.43	108.43	0.022224								0	0	0	0.34125	1	27632	27632		0.30703	0	1				10827	681	7169	7221	14881	14881					0.2229195407574025
LKLLISKLKAH	11	Unmodified	_LKLLISKLKAH_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	632.42919	1262.84383	-0.18708	-0.00011832	1.22	0.00077155	1.0329	0.00065323	632.4294757012555	108.53	0.18462	108.53	108.43	108.61	0	0.11636	0.00040347	NaN	0.30703	48	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1892800			10828	681	7169	7221							0.2229195407574025
LKLLKKLYLK	10	Unmodified	_LKLLKKLYLK_					0	0	0		ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.4425048828125	2	630.444309	1258.87407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.74	1	115.75	115.25	116.25	0.013092								0	0	0	0.33984	1	29408	29408		0.40072	0	1				10829	7255	7170	7222	14882	14882					0.2549831274091048
LKMFLNLL	8	Unmodified	_LKMFLNLL_					0	0	0		ENSG00000100226|ENST00000216044|GTPBP1	ENSG00000100226|ENST00000216044|GTPBP1	ENSG00000100226|ENST00000216044|GTPBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.3039245605469	2	496.304081	990.59361	0.50531	0.00025079	-0.42316	-0.00021002	0.082142	4.0768E-05	496.30379405199284	78.744	2.0165	78.744	78.153	80.169	0					103	69	2	0	0	0	0.53858	1	19361	19361		2.3027	0	1	494570			10830	1170	7171	7223	14883	14883					0.0979365347861858
LKNKPLMRK	9	Unmodified	_LKNKPLMRK_					0	0	0			REV__tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	REV__tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7930908203125	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.625	1	36.707	36.207	37.207	0.081715								0	0	0	0.2927	1	6153	6153		0.52476	0	1		+		10831	13116	7172	7224	14884	14884					0.14258623412843008
LKNKPLMRK	9	Unmodified	_LKNKPLMRK_					0	0	0			REV__tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	REV__tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3574829101562	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.9	1	114.91	114.41	115.41	0.013092								0	0	0	0.2927	1	29217	29217		0.52476	0	1		+		10832	13116	7172	7224	14885	14885					0.14258623412843008
LKPKALVPRP	10	Unmodified	_LKPKALVPRP_					0	0	0			REV__MYPN|p.P650R|1|0.56|ENSG00000138347|chr10:68166642-68166642|C/G|missense_variant	REV__MYPN|p.P650R|1|0.56|ENSG00000138347|chr10:68166642-68166642|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8736572265625	2	559.874051	1117.73355	0.42107	0.00023575	0.3311	0.00018538	0.75218	0.00042113	559.8741840820098	109.23	0.48036	109.25	109.12	109.6	0.019402					68	55	2	0	0	0	0.46656	1	27913	27913		1.6526	0.17072	1	811470	+		10833	12740	7173	7225	14886	14886					0.1793915380735598
LKPSQGWIKS	10	Unmodified	_LKPSQGWIKS_					0	0	0			REV__ENST00000418347.6_1_7:98972373-98974137:+|nuORF	REV__ENST00000418347.6_1_7:98972373-98974137:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3278198242188	2	572.329673	1142.64479	0.051085	2.9237E-05	0.83934	0.00048038	0.89042	0.00050962	572.3277904849357	45.848	0.19881	45.933	45.834	46.032	0.085621					11	7	3	0	0	0	0.46899	1	8949	8949		1.1933	0	1	33343	+		10834	11806	7174	7226	14887	14887					0.07917693777039858
LKQAEIWLHK	10	Unmodified	_LKQAEIWLHK_					0	0	0		TSFM-OS9|6|fusion;TSFM-OS9|8|fusion;TSFM-OS9|2|fusion;TSFM-OS9|4|fusion;TSFM-OS9|7|fusion;TSFM-OS9|5|fusion;TSFM-OS9|3|fusion;TSFM-OS9|1|fusion;nc|ENSG00000123297|P43897-3|TSFM;nc|ENSG00000123297|P43897-4|TSFM;nc|ENSG00000123297|P43897-2|TSFM;ENSG00000123297|ENST00000652027|TSFM	TSFM-OS9|6|fusion	TSFM-OS9|6|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.87109375	2	633.371872	1264.72919	0.10305	6.527E-05	-2.945	-0.0018653	-2.8419	-0.0018	633.8709299537043	90.12	0.56164	90.12	89.933	90.495	0					45	22	3	0	0	0	0.39662	1	22557	22557		12.241	4.0851	1	1597100			10835	13754	7175	7227	14888	14888					0.1074164459378153
LKQPGRREVF	10	Unmodified	_LKQPGRREVF_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.6986389160156	3	410.57529	1228.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.289	1	39.377	38.877	39.877	0.088562								0	0	0	0.33965	1	6952	6952		0.62683	0.4675	1				10836	4882	7176	7228	14889	14889					0.09883589791229497
LKQQRKLLEI	10	Unmodified	_LKQQRKLLEI_					0	0	0			REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.9080810546875	2	634.906079	1267.79761	-0.16816	-0.00010677	0.20815	0.00013215	0.039983	2.5386E-05	635.4076125712412	108.03	0.080391	108.03	108.01	108.09	0					28	11	3	0	0	0	0.46746	1	27878	27878		1.4819	0	1	9736100	+		10837	8104	7177	7229	14890	14890					0.17441889173665004
LKQQRKLLEI	10	Unmodified	_LKQQRKLLEI_					0	0	0			REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.9053344726562	2	634.906079	1267.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.37	1	108.37	107.87	108.87	0								0	0	0	0.33892	1	27948	27948		1.4819	0	1		+		10838	8104	7177	7229	14891	14891					0.17441889173665004
LKQQRKLLEI	10	Unmodified	_LKQQRKLLEI_					0	0	0			REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9067993164062	2	634.906079	1267.79761	0.24468	0.00015535	0.15891	0.00010089	0.40359	0.00025624	634.9066336567561	108.11	0.10132	108.13	108.07	108.17	0.022224					33	15	3	0	0	0	0.46746	1	27677	27677		1.4819	0	1	5479000	+		10839	8104	7177	7229	14892	14892					0.17441889173665004
LKQQRKLLEI	10	Unmodified	_LKQQRKLLEI_					0	0	0			REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9082641601562	2	634.906079	1267.79761	0.24458	0.00015528	1.8401	0.0011683	2.0846	0.0013236	634.9072186241932	108.51	0.19386	108.53	108.48	108.67	0.022224					51	28	3	0	0	0	0.46746	1	27777	27777		1.4819	0	1	1734400	+		10840	8104	7177	7229	14893	14893					0.17441889173665004
LKQQRKLLEI	10	Unmodified	_LKQQRKLLEI_					0	0	0			REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9088745117188	2	634.906079	1267.79761	0.24547	0.00015585	1.6933	0.0010751	1.9388	0.001231	634.907188206989	108.78	0.22588	108.79	108.67	108.9	0.019402					54	31	2	0	0	0	0.45627	1	27831	27831		3.5965	0.60125	1	4930600	+		10841	8104	7177	7229	14894	14894					0.17441889173665004
LKQQRKLLEI	10	Unmodified	_LKQQRKLLEI_					0	0	0			REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.906494140625	2	634.906079	1267.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.84	1	107.86	107.36	108.36	0.022224								0	0	0	0.33892	1	27617	27617		1.4819	0	1		+		10842	8104	7177	7229	14895	14895					0.17441889173665004
LKRKEFHSVE	10	Unmodified	_LKRKEFHSVE_					0	0	0			REV__ENST00000554313.1_1_14:96864549-96887771:+|nuORF	REV__ENST00000554313.1_1_14:96864549-96887771:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.2687377929688	2	636.856586	1271.69862	-0.058396	-3.719E-05	-2.5211	-0.0016056	-2.5795	-0.0016428	636.854952451879	46.257	0.082474	46.257	46.184	46.267	0					4	2	2	0	0	0	0.31838	1	9182	9182		1.4819	0.15237	1	17411	+		10843	9360	7178	7230	14896	14896					0.07363866208743275
LKRKLIRLFG	10	Unmodified	_LKRKLIRLFG_					0	0	0		nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.4203491210938	2	622.4217	1242.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.86	1	108.88	108.38	109.38	0.019402								0	0	0	0.33984	1	27846	27846		0.40072	0	1				10844	5455	7179	7231	14897	14897					0.2171450699838715
LKSDLLIGF	9	Unmodified	_LKSDLLIGF_					0	0	0			REV__ENSG00000153292|ENST00000371253|ADGRF1	REV__ENSG00000153292|ENST00000371253|ADGRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.3054504394531	2	503.302593	1004.59063	0.52293	0.00026319	2.3008	0.001158	2.8238	0.0014212	503.3041585014446	70.901	0.79311	70.96	70.775	71.569	0.058578					63	28	3	0	0	0	0.16392	1	16585	16585		22.736	0	1	594130	+		10845	9691	7180	7232	14898	14898					0.08852101625473097
LKSSDIYQTR	10	Unmodified	_LKSSDIYQTR_					0	0	0			REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.21832275390625	3	404.21906	1209.63535	0.047564	1.9226E-05	0.13857	5.6011E-05	0.18613	7.5238E-05	404.2189421929262	27.257	0.35579	27.257	27.097	27.453	0					67	21	4	0	0	0	0.38912	1	3533	3533		7.9454	2.162	1	59293	+		10846	11821	7181	7233	14899	14899					0.03891880700825823
LKSWFLFFLS	10	Unmodified	_LKSWFLFFLS_					0	0	0			REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3603515625	2	644.360442	1286.70633	0.40416	0.00026043	-0.34729	-0.00022378	0.056871	3.6646E-05	644.3601467445407	91.488	1.1365	91.488	91.269	92.405	0					83	42	3	0	0	0	0.46656	1	22992	22992		1.6526	0	1	575970	+		10847	11999	7182	7234	14900	14900					0.07444625476341571
LKVLLPEEV	9	Unmodified	_LKVLLPEEV_					0	0	0			REV__ENST00000465149.1_1_2:220420747-220435459:-|nuORF	REV__ENST00000465149.1_1_2:220420747-220435459:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.3238525390625	2	520.323525	1038.6325	0.32842	0.00017089	-0.086952	-4.5243E-05	0.24147	0.00012564	520.3234295936048	76.016	1.0335	76.055	75.408	76.441	0.03923					82	57	2	0	0	0	0.26684	1	18057	18057		10.824	0	1	1056100	+		10848	8940	7183	7235	14901	14901					0.11472657313993295
LKVPIRKGV	9	Unmodified	_LKVPIRKGV_					0	0	0			REV__ENST00000484240.1_1_17:44798950-44799232:-|nuORF	REV__ENST00000484240.1_1_17:44798950-44799232:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.8499450683594	2	505.347669	1008.68079	0.2101	0.00010618	1.2347	0.00062396	1.4448	0.00073013	505.34815890507986	112.83	0.42905	112.85	112.55	112.98	0.013809					62	47	2	0	0	0	0.34704	1	28811	28811		0.52476	0	1	377320	+		10849	12113	7184	7236	14902	14902					0.17679195744563003
LKVPIRKGV	9	Unmodified	_LKVPIRKGV_					0	0	0			REV__ENST00000484240.1_1_17:44798950-44799232:-|nuORF	REV__ENST00000484240.1_1_17:44798950-44799232:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	505.347669	1008.68079	-0.14745	-7.4513E-05	1.0043	0.00050754	0.8569	0.00043303	505.3480832409042	112.64	0.55128	112.64	112.47	113.02	0	-0.10471	-5.7035E-05	NaN	0.52476	104	60	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492870	+		10850	12113	7184	7236							0.17679195744563003
LKVPIRKGV	9	Unmodified	_LKVPIRKGV_					0	0	0			REV__ENST00000484240.1_1_17:44798950-44799232:-|nuORF	REV__ENST00000484240.1_1_17:44798950-44799232:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	505.347669	1008.68079	0.2101	0.00010618	1.2347	0.00062396	1.4448	0.00073013	505.34815890507986	112.83	0.42905	112.85	112.55	112.98	0.013809	0.10471	0.00017579	NaN	0.52476	62	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377320	+		10851	12113	7184	7236							0.17679195744563003
LKVVAPPRGLL	11	Unmodified	_LKVVAPPRGLL_					0	0	0		ENST00000482397.1_1_7:50672830-50674105:-|nuORF	ENST00000482397.1_1_7:50672830-50674105:-|nuORF	ENST00000482397.1_1_7:50672830-50674105:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.8872680664062	2	581.887158	1161.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.33	1	109.35	108.85	109.85	0.019402								0	0	0	0.33362	1	27955	27955		2.9952	0.93549	1				10852	6760	7185	7237	14903	14903					0.1853542297885724
LKYKKGET	8	Unmodified	_LKYKKGET_					0	0	0		ENST00000551901.5_1_16:21823661-21831677:-|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	ENST00000551901.5_1_16:21823661-21831677:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.23077392578125	2	483.784567	965.554582	0.023993	1.1607E-05	0.099716	4.8241E-05	0.12371	5.9849E-05	483.7845247225825	37.731	0.37008	37.731	37.494	37.864	0					20	12	2	0	0	0	0.3576	1	6602	6602		1.8442	0	1	21741			10853	963	7186	7238	14904	14904					0.07042644448631563
LKYLQRERL	9	Unmodified	_LKYLQRERL_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.9154968261719	3	406.915423	1217.72444	0.039014	1.5875E-05	0.02811	1.1438E-05	0.067124	2.7314E-05	406.9154361196014	36.524	2.1942	36.606	36.235	38.43	0.081715					195	83	4	0	0	0	0.24914	1	6081	6081		12.873	0.69786	1	762900	+		10854	8360	7187	7239	14905	14905					0.1242876045103003
LLAAAELGPS	10	Unmodified	_LLAAAELGPS_					0	0	0			REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF	REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2560119628906	2	471.26875	940.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.11	1	36.192	35.692	36.692	0.081715								0	0	0	0.33443	1	5999	5999		6.7232	0	1		+		10855	12202	7188	7240	14906	14906					0.05030651694664812
LLAAILFVPLP	11	Unmodified	_LLAAILFVPLP_					0	0	0			REV__ENST00000497611.1_1_1:91966987-91967233:+|nuORF	REV__ENST00000497611.1_1_1:91966987-91967233:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8836669921875	2	583.88101	1165.74747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.28	1	112.29	111.79	112.79	0.014595								0	0	0	0.33792	1	28634	28634		1.4819	0.28856	1		+		10856	12190	7189	7241	14907	14907					0.17122386515802646
LLAGPLAITL	10	Unmodified	_LLAGPLAITL_					0	0	0		ENST00000491948.5_1_22:24200072-24210829:+|nuORF;SLC2A11-LLPH|2|fusion;SLC2A11-LLPH|3|fusion;SLC2A11-LLPH|1|fusion;nc|ENSG00000133460|Q9BYW1-2|SLC2A11;ENST00000461809.5_1_22:24200186-24224826:+|nuORF;ENST00000405286.6_1_22:24199637-24224826:+|nuORF;nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11	ENST00000491948.5_1_22:24200072-24210829:+|nuORF	ENST00000491948.5_1_22:24200072-24210829:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.3207702636719	2	491.320786	980.627018	0.44043	0.00021639	-0.1998	-9.8167E-05	0.24063	0.00011822	491.32057120090417	91.721	0.55266	91.721	91.435	91.988	0					30	20	2	0	0	0	0.093158	1	22987	22987		46.021	0.32134	1	418150			10857	2629	7190	7242	14908	14908					0.1359297852217196
LLAPHLIGEF	10	Unmodified	_LLAPHLIGEF_					0	0	0		ENSG00000138075|ENST00000405322|ABCG5;nc|ENSG00000138075|Q9H222-2|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3232421875	2	555.321317	1108.62808	0.92489	0.00051361	-0.44539	-0.00024733	0.4795	0.00026628	555.321034823953	66.377	0.25635	66.377	66.223	66.48	0					16	9	2	0	0	0	0.37232	1	15318	15318		14.838	0.93222	1	76925			10858	2890	7191	7243	14909	14909					0.07811192891085739
LLASAGLLLL	10	Unmodified	_LLASAGLLLL_					0	0	0		ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.32867431640625	2	492.328611	982.642668	0.31206	0.00015363	0.090493	4.4552E-05	0.40255	0.00019819	492.32854504090176	90.503	0.72666	90.503	90.184	90.911	0					58	27	3	0	0	0	0.21218	1	22604	22604		32.305	3.2239	1	357470			10859	5137	7192	7244	14910	14910					0.1506526503923169
LLATPYVSSH	10	Unmodified	_LLATPYVSSH_					0	0	0		L1MEd_dup14838|chr11:12977557-12977725:+|1.077120990270905|0.0943699703655045|3.51|509.0|8|1|anti-sense	L1MEd_dup14838|chr11:12977557-12977725:+|1.077120990270905|0.0943699703655045|3.51|509.0|8|1|anti-sense	L1MEd_dup14838|chr11:12977557-12977725:+|1.077120990270905|0.0943699703655045|3.51|509.0|8|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.31298828125	2	544.292756	1086.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.96	1	97.96	97.46	98.46	0								0	0	0	0.33092	1	24926	24926		10.824	0	1				10860	7388	7193	7245	14911	14911					0.031137256147076187
LLAVELCMII	10	Unmodified	_LLAVELCMII_					0	0	0			REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|74	REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|74	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7898559570312	2	559.321614	1116.62867	0.42435	0.00023735	4.0669	0.0022747	4.4913	0.0025121	559.3237980233085	71.496	0.45843	71.496	71.297	71.755	0					21	15	2	0	0	0	0.31691	1	16856	16856		7.2892	0.56607	1	62533	+		10861	7806	7194	7246	14912	14912					0.07502528224267735
LLAWEDPTF	9	Unmodified	_LLAWEDPTF_					0	0	0			REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P	REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7756958007812	2	546.274032	1090.53351	0.20772	0.00011347	-0.15322	-8.3699E-05	0.0545	2.9772E-05	546.2739832935952	87.212	0.79945	87.239	87.021	87.821	0.027573					100	31	4	0	0	0	0.29105	1	21612	21612		7.9102	0.62092	1	1295100	+		10862	12887	7195	7247	14913	14913					-0.008133656509244247
LLCCNNICNMM	11	Unmodified	_LLCCNNICNMM_					0	0	0		tr|U7T2S8|U7T2S8_FUSNU(R)-2-hydroxyglutaryl-CoAdehydratasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00401PE=3SV=1	tr|U7T2S8|U7T2S8_FUSNU(R)-2-hydroxyglutaryl-CoAdehydratasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00401PE=3SV=1	tr|U7T2S8|U7T2S8_FUSNU(R)-2-hydroxyglutaryl-CoAdehydratasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00401PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.2572631835938	2	636.257307	1270.50006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.503	1	26.503	26.003	27.003	0								0	0	0	0.34212	1	3278	3278		0	0	1				10863	13695	7196	7248	14914	14914					-0.12436841344310778
LLCHWAWREP	10	Unmodified	_LLCHWAWREP_					0	0	0		ENST00000300403.10_1_20:30388876-30389098:+|nuORF	ENST00000300403.10_1_20:30388876-30389098:+|nuORF	ENST00000300403.10_1_20:30388876-30389098:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.55303955078125	3	437.553609	1309.639	-0.17007	-7.4415E-05	-0.21135	-9.2479E-05	-0.38142	-0.00016689	437.55345369909776	42.658	2.1483	42.658	41.711	43.859	0					140	75	2	0	0	0	0.45904	1	7973	7973		3.0723	1.33	1	89918			10864	5973	7197	7249	14915	14915					-0.0034372800628261757
LLCLGRMF	8	Unmodified	_LLCLGRMF_					0	0	0			REV__ENST00000275262.11_1_6:163986120-163986207:+|nuORF	REV__ENST00000275262.11_1_6:163986120-163986207:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7578430175781	2	476.758984	951.503414	-0.090468	-4.3132E-05	-0.99318	-0.00047351	-1.0836	-0.00051664	476.7584245674166	51.157	0.40443	51.157	50.922	51.327	0					21	13	2	0	0	0	0.52924	1	10648	10648		8.5933	0	1	71141	+		10865	11281	7198	7250	14916	14916					0.025722808785644702
LLCMRPVL	8	Unmodified	_LLCMRPVL_					0	0	0			REV__ENST00000354105.8_1_10:102016116-102016164:-|nuORF	REV__ENST00000354105.8_1_10:102016116-102016164:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.7740478515625	2	472.774634	943.534715	-0.016681	-7.8862E-06	-0.86699	-0.00040989	-0.88367	-0.00041778	472.77404822873416	36.754	0.84282	36.754	36.522	37.364	0					70	32	4	0	0	0	0.52502	1	6401	6401		9.3474	2.0582	1	310820	+		10866	11490	7199	7251	14917	14917					0.06068853912654504
LLDAFFNK	8	Unmodified	_LLDAFFNK_					0	0	0		FASN|p.E1802K|1|0.15|ENSG00000169710|chr17:82083363-82083363|C/T|missense_variant	FASN|p.E1802K|1|0.15|ENSG00000169710|chr17:82083363-82083363|C/T|missense_variant	FASN|p.E1802K|1|0.15|ENSG00000169710|chr17:82083363-82083363|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.26788330078125	2	484.26601	966.517468	0.050208	2.4314E-05	3.2585	0.001578	3.3087	0.0016023	484.26762245018654	88.125	0.34502	88.155	87.906	88.251	0.030037					18	11	2	0	0	0	0.48462	1	21776	21776		14.838	4.7643	1	101230			10867	7339	7200	7252	14918	14918					0.03286972902856178
LLDAFFNK	8	Unmodified	_LLDAFFNK_					0	0	0		FASN|p.E1802K|1|0.15|ENSG00000169710|chr17:82083363-82083363|C/T|missense_variant	FASN|p.E1802K|1|0.15|ENSG00000169710|chr17:82083363-82083363|C/T|missense_variant	FASN|p.E1802K|1|0.15|ENSG00000169710|chr17:82083363-82083363|C/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.26601	966.517468	0.24068	0.00011655	3.5055	0.0016976	3.7462	0.0018142	484.2675385058429	88.058	0.31037	88.058	87.948	88.259	0	-0.04862	6.635E-05	NaN	14.838	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78890			10868	7339	7200	7252							0.03286972902856178
LLDCFGIPVL	10	Unmodified	_LLDCFGIPVL_					0	0	0		nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2	nc|ENSG00000110660|Q8IXU6-3|SLC35F2	nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3062744140625	2	545.304278	1088.594	0.2287	0.00012471	3.2365	0.0017649	3.4652	0.0018896	545.3058247747134	38.821	0.37339	38.821	38.657	39.03	0					30	14	3	0	0	0	0.41688	1	6970	6970		10.074	2.1638	1	58461			10869	1674	7201	7253	14919	14919					0.053250284078103505
LLDDFAKSQIY	11	Unmodified	_LLDDFAKSQIY_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5630187988281	3	438.230966	1311.67107	0.17518	7.677E-05	0.70894	0.00031068	0.88412	0.00038745	438.23111627818633	56.715	0.39897	56.781	56.571	56.97	0.066452					20	13	2	0	0	0	0.31089	1	12254	12254		2.6312	0.72486	1	87901	+		10870	9897	7202	7254	14920	14920					0.027699181578782373
LLDDIEDIV	9	Unmodified	_LLDDIEDIV_					0	0	0		nc|ENSG00000145996|Q5VV42-3|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-3|CDKAL1	nc|ENSG00000145996|Q5VV42-3|CDKAL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7747192382812	2	522.776605	1043.53866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.261	1	97.261	96.761	97.761	0								0	0	0	0.27613	1	24715	24715		3.9444	0	1				10871	3272	7203	7255	14921	14921					0.018628934210255466
LLDRVWYF	8	Unmodified	_LLDRVWYF_					0	0	0			REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF	REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7339477539062	2	556.300384	1110.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.94	1	32.94	32.44	33.44	0								0	0	0	0.38822	1	5170	5170		0.79363	0	1		+		10872	11682	7204	7256	14922	14922					0.03534637202551494
LLEDLIFFV	9	Unmodified	_LLEDLIFFV_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8167724609375	2	554.818076	1107.6216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.21	1	107.23	106.73	107.73	0.025711								0	0	0	0.28527	1	27460	27460		2.0598	0	1				10873	2205	7205	7257	14923	14923					0.0720925493969844
LLEDTEAD	8	Unmodified	_LLEDTEAD_					0	0	0			REV__nc|ENSG00000158023|Q8TBY9-2|CFAP251	REV__nc|ENSG00000158023|Q8TBY9-2|CFAP251	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2093811035156	2	453.208555	904.402557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.131	1	84.153	83.653	84.653	0.021744								0	0	0	0.38822	1	20560	20560		2.5775	0	1		+		10874	9794	7206	7258	14924	14924					-0.05346801089615383
LLEKIKKMKV	10	Unmodified	_LLEKIKKMKV_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.4031982421875	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.16	1	15.16	14.66	15.66	0								0	0	0	0.33892	1	499	499		1.4819	0.15237	1		+		10875	11131	7207	7259	14925	14925					0.1888550307544392
LLEKIKKMKV	10	Unmodified	_LLEKIKKMKV_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7716064453125	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.273	1	35.273	34.773	35.773	0								0	0	0	0.33988	1	5868	5868		0.35063	0.043601	1		+		10876	11131	7207	7259	14926	14926					0.1888550307544392
LLEKIKKMKV	10	Unmodified	_LLEKIKKMKV_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.4051513671875	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.03	1	106.03	105.53	106.53	0								0	0	0	0.33892	1	27330	27330		1.4819	0.15237	1		+		10877	11131	7207	7259	14927	14927					0.1888550307544392
LLEKIKKMKV	10	Unmodified	_LLEKIKKMKV_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.4049682617188	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.17	1	106.17	105.67	106.67	0								0	0	0	0.33892	1	27369	27369		1.4819	0.15237	1		+		10878	11131	7207	7259	14928	14928					0.1888550307544392
LLEKIKKMKV	10	Unmodified	_LLEKIKKMKV_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.4033813476562	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.225	1	18.315	17.815	18.815	0.089705								0	0	0	0.33892	1	1011	1011		1.4819	0.15237	1		+		10879	11131	7207	7259	14929	14929					0.1888550307544392
LLEKIKKMKV	10	Unmodified	_LLEKIKKMKV_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.40380859375	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.595	1	19.69	19.19	20.19	0.095232								0	0	0	0.33892	1	1313	1313		1.4819	0.15237	1		+		10880	11131	7207	7259	14930	14930					0.1888550307544392
LLEKIKKMKV	10	Unmodified	_LLEKIKKMKV_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.4038696289062	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.797	1	30.871	30.371	31.371	0.073782								0	0	0	0.33892	1	4410	4410		1.4819	0.15237	1		+		10881	11131	7207	7259	14931	14931					0.1888550307544392
LLEKPRFF	8	Unmodified	_LLEKPRFF_					0	0	0		ENST00000231572.7_1_5:167943936-167944917:+|nuORF	ENST00000231572.7_1_5:167943936-167944917:+|nuORF	ENST00000231572.7_1_5:167943936-167944917:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.31103515625	2	525.310752	1048.60695	0.25983	0.00013649	0.14363	7.545E-05	0.40345	0.00021194	525.3107224222903	75.121	0.78351	75.165	74.812	75.595	0.044037					71	28	3	0	0	0	0.39599	2	17832	17832;17881		26.884	1.4843	1	845200			10882	5813	7208	7260	14932;14933	14932					0.08459227582216045
LLESITELPLD	11	Unmodified	_LLESITELPLD_					0	0	0			REV__nc|ENSG00000204084|P32019-4|INPP5B	REV__nc|ENSG00000204084|P32019-4|INPP5B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.5571594238281	3	414.899105	1241.67548	0.13693	5.6813E-05	-2.7524	-0.001142	-2.6155	-0.0010852	414.89814248038596	33.462	0.46447	33.462	33.275	33.739	0					22	16	2	0	0	0	0.31097	1	5326	5326		1.2148	0	1	18205	+		10883	12874	7209	7261	14934	14934					0.06431382580740319
LLEVLNTLN	9	Unmodified	_LLEVLNTLN_					0	0	0			REV__tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	REV__tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.8030395507812	2	514.802957	1027.59136	0.038468	1.9804E-05	0.0044573	2.2946E-06	0.042925	2.2098E-05	514.8029435138775	43.944	0.66211	44.033	43.818	44.48	0.088924					61	22	4	0	0	0	0.32375	1	8490	8490		3.5965	0	1	481010	+		10884	13089	7210	7262	14935	14935					0.07866896274549617
LLEVTAEVTF	10	Unmodified	_LLEVTAEVTF_					0	0	0		nc|ENSG00000133962|Q9H7T0-2|CATSPERB;ENSG00000133962|ENST00000256343|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3062744140625	2	561.308072	1120.60159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.41	1	74.459	73.959	74.959	0.048546								0	0	0	0.32245	1	17597	17597		14.838	0.93222	1				10885	2641	7211	7263	14936	14936					0.046114592090816586
LLEWLSFL	8	Unmodified	_LLEWLSFL_					0	0	0		ENST00000589085.5_1_19:5785216-5787684:-|nuORF;nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7915954589844	2	510.791861	1019.56917	0.56906	0.00029067	-3.8619	-0.0019726	-3.2929	-0.001682	510.79065601738597	93.129	0.53871	93.129	92.897	93.435	0					23	20	2	0	0	0	0.52924	1	23458	23458		8.5933	0	1	58172			10886	3084	7212	7264	14937	14937					0.060167165967413894
LLFFFLKILL	10	Unmodified	_LLFFFLKILL_					0	0	0			REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.915283203125	2	633.914853	1265.81515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.4	1	61.473	60.973	61.973	0.073421								0	0	0	0.33984	1	13646	13646		0.40072	0	1		+		10887	12240	7213	7265	14938	14938					0.19287836446596884
LLFFFRLSPV	10	Unmodified	_LLFFFRLSPV_					0	0	0			REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8695678710938	2	619.868434	1237.72232	0.20533	0.00012728	1.5282	0.0009473	1.7336	0.0010746	619.8692634850719	92.452	0.55238	92.488	92.254	92.807	0.03653					33	19	2	0	0	0	0.46656	1	23131	23131		1.6526	0	1	147330	+		10888	11364	7214	7266	14939	14939					0.11296331713219843
LLFLKKKKK	9	Unmodified	_LLFLKKKKK_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.4085693359375	2	573.410269	1144.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.05	1	109.07	108.57	109.57	0.019402								0	0	0	0.29525	1	27887	27887		0	0	1				10889	6099	7215	7267	14940	14940					0.239374878809258
LLFMFFSFE	9	Unmodified	_LLFMFFSFE_					0	0	0			REV__ENST00000379514.2_1_9:33503785-33510678:-|nuORF	REV__ENST00000379514.2_1_9:33503785-33510678:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7913818359375	2	590.791004	1179.56745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.932	1	98.974	98.474	99.474	0.041931								0	0	0	0.28631	1	25067	25067		1.8442	0	1		+		10890	11660	7216	7268	14941	14941					-0.01514660483485386
LLFTKTEPC	9	Unmodified	_LLFTKTEPC_					0	0	0		ZNF804B|p.S472C|1|0.14|ENSG00000182348|chr7:89334397-89334397|C/G|missense_variant;ENSG00000182348|ENST00000333190|ZNF804B	ZNF804B|p.S472C|1|0.14|ENSG00000182348|chr7:89334397-89334397|C/G|missense_variant	ZNF804B|p.S472C|1|0.14|ENSG00000182348|chr7:89334397-89334397|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2399291992188	2	526.27826	1050.54197	-0.18249	-9.6041E-05	-0.83165	-0.00043768	-1.0141	-0.00053372	526.7780690442079	27.352	0.101	27.352	27.284	27.385	0					8	5	2	0	0	0	0.25845	1	3526	3526		2.0598	0.21551	1	9426			10891	4872	7217	7269	14942	14942					0.018718649940410614
LLGEYNRNK	9	Unmodified	_LLGEYNRNK_					0	0	0		ENST00000298139.5_1_8:30938501-30938558:+|nuORF	ENST00000298139.5_1_8:30938501-30938558:+|nuORF	ENST00000298139.5_1_8:30938501-30938558:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.3027954101562	2	553.80128	1105.58801	-0.17082	-9.4602E-05	-0.28895	-0.00016002	-0.45978	-0.00025462	553.8011772548139	41.452	0.65296	41.542	41.365	42.018	0.089764					60	26	4	0	0	0	0.24767	2	7657	7655;7657		13.042	2.8919	1	161330			10892	5966	7218	7270	14943;14944	14944					0.03943646220500341
LLGLLSLGFE	10	Unmodified	_LLGLLSLGFE_					0	0	0		nc|ENSG00000138658|Q86YA3-7|ZGRF1;ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1	nc|ENSG00000138658|Q86YA3-7|ZGRF1	nc|ENSG00000138658|Q86YA3-7|ZGRF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3136596679688	2	531.3157	1060.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.72	1	101.76	101.26	102.26	0.042656								0	0	0	0.33877	1	25911	25911		1.6526	0.17072	1				10893	2926	7219	7271	14945	14945					0.08896370796969677
LLGPCKFALVC	11	Unmodified	_LLGPCKFALVC_					0	0	0			REV__nc|ENSG00000145743|Q9UF56-3|FBXL17	REV__nc|ENSG00000145743|Q9UF56-3|FBXL17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.31982421875	2	582.319405	1162.62426	0.69834	0.00040666	-0.36302	-0.00021139	0.33533	0.00019527	582.3191693051267	65.161	0.41769	65.23	65.035	65.452	0.068916					32	15	3	0	0	0	0.35043	1	14825	14825		12.241	0	1	375990	+		10894	9525	7220	7272	14946	14946					0.04945063801346805
LLGPVGVGGGG	11	Unmodified	_LLGPVGVGGGG_					0	0	0			REV__ENSG00000180828|ENST00000321870|BHLHE22	REV__ENSG00000180828|ENST00000321870|BHLHE22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2970886230469	2	441.75581	881.497067	-0.052673	-2.3268E-05	0.071542	3.1604E-05	0.018869	8.3356E-06	441.7557204601811	44.894	0.27682	44.894	44.717	44.994	0					10	9	2	0	0	0	0.31102	1	8717	8717		0	0	1	22904	+		10895	10515	7221	7273	14947	14947					0.05157802243070364
LLGRRNGG	8	Unmodified	_LLGRRNGG_					0	0	0		ENST00000588933.5_1_19:9544893-9545835:-|nuORF;ENST00000588221.5_1_19:9530876-9545835:-|nuORF	ENST00000588933.5_1_19:9544893-9545835:-|nuORF	ENST00000588933.5_1_19:9544893-9545835:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.7513122558594	2	421.751393	841.488233	-0.018715	-7.8933E-06	0.14847	6.2617E-05	0.12975	5.4723E-05	421.75140175919734	72.37	0.94839	72.426	71.921	72.869	0.055939					51	32	2	0	0	0	0.54097	1	16988	16988		0.69038	0	1	125540			10896	7249	7222	7274	14948	14948					0.06114873397245901
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8975830078125	2	626.392805	1250.77106	-0.24413	-0.00015292	4.1925	0.0026261	3.9483	0.0024732	626.3947605791575	107.63	0.064667	107.63	107.58	107.64	0					15	8	2	0	0	0	0.39569	1	27781	27781		5.2969	2.3016	1	54055000	+		10897	11379	7223	7275	14949	14949					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.393310546875	2	626.392805	1250.77106	-0.24199	-0.00015158	2.6059	0.0016323	2.3639	0.0014807	626.3939693996319	107.82	0.10934	107.82	107.79	107.9	0					34	17	3	0	0	0	0.39569	1	27830	27830		5.2969	2.3016	1	20555000	+		10898	11379	7223	7275	14950	14950					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.391357421875	2	626.392805	1250.77106	-0.24165	-0.00015137	-1.2686	-0.00079461	-1.5102	-0.00094598	626.3916048847376	107.95	0.16454	107.95	107.9	108.07	0					56	22	3	0	0	0	0.38315	2	27845	27842;27845		8.1555	2.8586	1	19213000	+		10899	11379	7223	7275	14951;14952	14952					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3952026367188	2	626.392805	1250.77106	-0.24493	-0.00015342	2.1575	0.0013514	1.9126	0.001198	626.3940878746371	108.54	0.19343	108.54	108.43	108.62	0					47	28	2	0	0	0	0.39569	1	27991	27991		5.2969	2.3016	1	6375700	+		10900	11379	7223	7275	14953	14953					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8975219726562	2	626.392805	1250.77106	-0.24104	-0.00015098	1.5498	0.00097079	1.3088	0.00081981	626.3937339211466	108.65	0.14784	108.65	108.58	108.72	0					42	21	3	0	0	0	0.38315	2	28019	28019;28025		8.1555	5.1603	1	3287700	+		10901	11379	7223	7275	14954;14955	14954					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8967895507812	2	626.392805	1250.77106	-0.24112	-0.00015103	1.6132	0.0010105	1.3721	0.00085947	626.3937211905079	108.78	0.28772	108.78	108.7	108.99	0					104	44	3	0	0	0	0.39569	1	28051	28051		5.2969	2.3016	1	2738400	+		10902	11379	7223	7275	14956	14956					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.394775390625	2	626.392805	1250.77106	0.28451	0.00017822	1.7324	0.0010852	2.0169	0.0012634	626.39344098822	107.64	0.094696	107.66	107.59	107.69	0.022224					29	13	3	0	0	0	0.41309	2	27565	27565;27580		1.3295	0.87119	1	54477000	+		10903	11379	7223	7275	14957;14958	14957					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8904418945312	2	626.392805	1250.77106	0.2871	0.00017983	-1.7102	-0.0010712	-1.4231	-0.0008914	626.8941280095111	107.83	0.083298	107.85	107.8	107.88	0.022224					27	11	3	0	0	0	0.39569	1	27609	27609		5.2969	0	1	31399000	+		10904	11379	7223	7275	14959	14959					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8950805664062	2	626.392805	1250.77106	0.28696	0.00017975	-1.493	-0.0009352	-1.206	-0.00075545	626.391634577478	108.1	0.10767	108.13	108.07	108.17	0.022232					48	16	4	0	0	0	0.39569	1	27671	27671		5.2969	1.7004	1	12288000	+		10905	11379	7223	7275	14960	14960					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3903198242188	2	626.392805	1250.77106	0.28416	0.00017799	0.64202	0.00040215	0.92617	0.00058015	626.3926793719507	108.26	0.21171	108.29	108.17	108.38	0.022224					70	29	3	0	0	0	0.39569	2	27690	27690;27718		5.2969	2.3016	1	10037000	+		10906	11379	7223	7275	14961;14962	14961					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3945922851562	2	626.392805	1250.77106	0.28483	0.00017842	0.76021	0.00047619	1.045	0.00065461	626.3935104772615	108.36	0.13937	108.38	108.34	108.48	0.022224					30	18	3	0	0	0	0.39569	1	27745	27745		5.2969	2.3016	1	6755300	+		10907	11379	7223	7275	14963	14963					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.390625	2	626.392805	1250.77106	0.28304	0.00017729	0.74591	0.00046723	1.0289	0.00064452	626.3925998752686	108.47	0.25002	108.49	108.45	108.7	0.022232					72	36	3	0	0	0	0.38315	1	27765	27765		8.1555	5.1603	1	3099700	+		10908	11379	7223	7275	14964	14964					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.39501953125	2	626.392805	1250.77106	0.28598	0.00017914	0.82406	0.00051618	1.11	0.00069532	626.3933122375032	108.72	0.085144	108.73	108.69	108.77	0.019402					26	11	3	0	0	0	0.41309	1	27817	27817		1.3295	0	1	2060600	+		10909	11379	7223	7275	14965	14965					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3931884765625	2	626.392805	1250.77106	0.27896	0.00017474	-3.1962	-0.0020021	-2.9172	-0.0018273	626.3913386295668	108.78	0.11283	108.79	108.73	108.85	0.019409					23	15	3	0	0	0	0.40578	1	27827	27827		2.9952	1.5133	1	6201200	+		10910	11379	7223	7275	14966	14966					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3915405273438	2	626.392805	1250.77106	0.28434	0.00017811	2.157	0.0013511	2.4414	0.0015292	626.8963572087392	108.97	0.42688	108.99	108.88	109.31	0.019409					74	61	2	0	0	0	0.38315	3	27864	27855;27864;27868		8.1555	5.1603	1	1945500	+		10911	11379	7223	7275	14967;14968;14969	14968					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3931884765625	2	626.392805	1250.77106	0.28451	0.00017822	0.97205	0.00060889	1.2566	0.0007871	626.3932242735818	108.83	0.12418	108.85	108.8	108.92	0.019402					28	17	3	0	0	0	0.3108	1	27827	27827		2.9952	1.5133	1	2520000	+		10912	11379	7223	7275	14970	14970					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	626.392805	1250.77106	0.28598	0.00017914	0.82406	0.00051618	1.11	0.00069532	626.3933122375032	108.72	0.085144	108.73	108.69	108.77	0.019402	0.042067	-0.0004215	NaN	8.1555	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2060600	+		10913	11379	7223	7275							0.15570200282309088
LLHALSLDEG	10	Unmodified	_LLHALSLDEG_					0	0	0		ENSG00000145911|ENST00000274605|N4BP3	ENSG00000145911|ENST00000274605|N4BP3	ENSG00000145911|ENST00000274605|N4BP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.3690185546875	2	534.290214	1066.56587	0.48386	0.00025852	1.5635	0.00083535	2.0473	0.0010939	534.290956345686	109.55	0.15781	109.57	109.48	109.64	0.019409					18	15	2	0	0	0	0.31794	1	28040	28040		3.5965	0	1	373560			10914	3269	7224	7276	14971	14971					0.03525421752101465
LLHCTHDEIV	10	Unmodified	_LLHCTHDEIV_					0	0	0		KCNMB4|p.R163C|1|0.04|ENSG00000135643|chr12:70430507-70430507|C/T|missense_variant	KCNMB4|p.R163C|1|0.04|ENSG00000135643|chr12:70430507-70430507|C/T|missense_variant	KCNMB4|p.R163C|1|0.04|ENSG00000135643|chr12:70430507-70430507|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.7670288085938	2	590.294973	1178.57539	0.48293	0.00028507	-0.26156	-0.0001544	0.22136	0.00013067	590.2946632265783	47.671	0.75097	47.671	47.372	48.123	0					28	25	2	0	0	0	0.31834	1	9744	9744		1.6526	0	1	91340			10915	7368	7225	7277	14972	14972					-0.00675133234040004
LLHLQRWI	8	Unmodified	_LLHLQRWI_					0	0	0		ENST00000503202.1_1_4:83323057-83323543:-|nuORF;ENSG00000089289|ENST00000356413|IGBP1;ENSG00000266826|ENST00000583666|IGBP1C	ENST00000503202.1_1_4:83323057-83323543:-|nuORF	ENST00000503202.1_1_4:83323057-83323543:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3162231445312	2	539.829643	1077.64473	0.62641	0.00033816	-0.86495	-0.00046693	-0.23854	-0.00012877	539.8290822220946	68.141	0.28017	68.204	68.103	68.383	0.063507					13	9	2	0	0	0	0.3576	1	15664	15664		2.3027	0	1	77540			10916	1031	7226	7278	14973	14973					0.109017385676907
LLHPFMPFI	9	Unmodified	_LLHPFMPFI_					0	0	0		tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2979736328125	2	557.809531	1113.60451	0.35163	0.00019614	1.895	0.001057	2.2466	0.0012532	557.8105828130532	72.328	0.35698	72.384	72.181	72.538	0.055939					31	12	3	0	0	0	0.24749	1	16912	16912		9.3474	0	1	227400			10917	13672	7227	7279	14974	14974					0.05225055852906735
LLHSSRFF	8	Unmodified	_LLHSSRFF_					0	0	0		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7947998046875	2	503.777077	1005.5396	0.28237	0.00014225	2.27	0.0011436	2.5524	0.0012858	504.2797275874584	88.81	0.13126	88.842	88.772	88.903	0.032257					6	4	2	0	0	0	0.3576	1	21968	21968		6.3541	1.5981	1	38087			10918	510	7228	7280	14975	14975					0.037051973712891595
LLHYMDCFF	9	Unmodified	_LLHYMDCFF_					0	0	0			REV__OR4A47|p.P181H|1|0.04|ENSG00000237388|chr11:48489334-48489334|C/A|missense_variant	REV__OR4A47|p.P181H|1|0.04|ENSG00000237388|chr11:48489334-48489334|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.8244018554688	2	594.764463	1187.51437	0.005255	3.1255E-06	3.8734	0.0023037	3.8786	0.0023069	594.7666448130642	73.324	0.54551	73.324	73.145	73.69	0					32	19	2	0	0	0	0.2404	1	17483	17483		13.508	0.97634	1	714990	+		10919	12940	7229	7281	14976	14976					-0.07188361537828314
LLIAKTYYN	9	Unmodified	_LLIAKTYYN_					0	0	0		ENST00000463418.5_1_2:158157328-158158798:+|nuORF	ENST00000463418.5_1_2:158157328-158158798:+|nuORF	ENST00000463418.5_1_2:158157328-158158798:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.80078125	2	549.813325	1097.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.33	1	36.33	35.83	36.83	0								0	0	0	0.2927	1	6187	6187		0.52476	0	1				10920	6623	7230	7282	14977	14977					0.06719486654174034
LLILMVLK	8	Unmodified	_LLILMVLK_					0	0	0			REV__tr|U7SMH7|U7SMH7_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01873PE=4SV=1	REV__tr|U7SMH7|U7SMH7_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01873PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.8215026855469	2	471.82465	941.634746	-0.0029243	-1.3798E-06	-2.7707	-0.0013073	-2.7736	-0.0013087	471.82160048436464	112.03	0.7081	112.05	111.91	112.62	0.014595					153	84	4	0	0	0	0.54081	1	28578	28578		0.79363	0	1	1169700	+		10921	13090	7231	7283	14978	14978					0.16159414518097037
LLIMTNVLLRN	11	Unmodified	_LLIMTNVLLRN_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|42	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.9327392578125	3	433.932086	1298.77443	0.58515	0.00025392	1.0444	0.00045321	1.6296	0.00070713	433.93242123311853	91.387	1.1682	91.387	91.183	92.351	0					50	43	2	0	0	0	0.4167	1	22941	22941		0.50596	0.051438	1	206890	+		10922	7811	7232	7284	14979	14979					0.13699127064705863
LLIVRWSY	8	Unmodified	_LLIVRWSY_					0	0	0			REV__ENSG00000204923|ENST00000377957|FBXO48	REV__ENSG00000204923|ENST00000377957|FBXO48	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3108520507812	2	525.310752	1048.60695	0.25983	0.00013649	0.14363	7.545E-05	0.40345	0.00021194	525.3107224222903	75.121	0.78351	75.165	74.812	75.595	0.044037					71	28	3	0	0	0	0.52924	1	17734	17734		8.5933	1.304	1	845200	+		10923	10960	7233	7285	14980	14980					0.08459227582238782
LLKIEKRCQK	10	Unmodified	_LLKIEKRCQK_					0	0	0			REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.3889770507812	2	629.886832	1257.75911	-0.20474	-0.00012896	-0.40039	-0.0002522	-0.60513	-0.00038116	630.3866022392057	108.24	0.069519	108.24	108.22	108.29	0					11	9	2	0	0	0	0.31838	1	27917	27917		1.4819	0	1	2607700	+		10924	7884	7234	7286	14981	14981					0.14054260267471363
LLKKKKKNA	9	Unmodified	_LLKKKKKNA_					0	0	0			REV__ENST00000389266.7_1_7:30673494-30673641:+|nuORF	REV__ENST00000389266.7_1_7:30673494-30673641:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.8755493164062	2	535.874051	1069.73355	0.52618	0.00028197	0.20813	0.00011153	0.73431	0.0003935	535.8738768669482	112.78	0.36375	112.79	112.72	113.08	0.013817					55	43	2	0	0	0	0.34704	1	28808	28808		0.52476	0	1	222330	+		10925	11683	7235	7287	14982	14982					0.20147153807374707
LLKKKKKNA	9	Unmodified	_LLKKKKKNA_					0	0	0			REV__ENST00000389266.7_1_7:30673494-30673641:+|nuORF	REV__ENST00000389266.7_1_7:30673494-30673641:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	535.874051	1069.73355	0.016192	8.6766E-06	0.738	0.00039548	0.7542	0.00040415	535.8742425889097	112.81	0.2791	112.81	112.75	113.02	0	0.0081328	0.00023061	NaN	0.52476	56	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350930	+		10926	11683	7235	7287							0.20147153807374707
LLKKKKKNA	9	Unmodified	_LLKKKKKNA_					0	0	0			REV__ENST00000389266.7_1_7:30673494-30673641:+|nuORF	REV__ENST00000389266.7_1_7:30673494-30673641:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	535.874051	1069.73355	0.52618	0.00028197	0.20813	0.00011153	0.73431	0.0003935	535.8738768669482	112.78	0.36375	112.79	112.72	113.08	0.013817	-0.0081328	-0.00033728	NaN	0.52476	55	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222330	+		10927	11683	7235	7287							0.20147153807374707
LLKLRYLIL	9	Unmodified	_LLKLRYLIL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3259887695312	2	572.894452	1143.77435	-0.038811	-2.2235E-05	0.28427	0.00016286	0.24546	0.00014062	572.8946537160446	72.215	0.64317	72.215	72.019	72.662	0					31	21	2	0	0	0	0.2298	1	17082	17082		16.942	0	1	272900			10928	5414	7236	7288	14983	14983					0.2082149512698379
LLKLRYLIL	9	Unmodified	_LLKLRYLIL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3259887695312	2	572.894452	1143.77435	0.13471	7.7174E-05	0.029274	1.6771E-05	0.16398	9.3945E-05	572.8943220917151	72.309	0.67974	72.365	71.98	72.66	0.055939					37	23	2	0	0	0	0.2298	1	16900	16900		16.942	4.4107	1	224850			10929	5414	7236	7288	14984	14984					0.2082149512698379
LLKPQRKVTL	10	Unmodified	_LLKPQRKVTL_					0	0	0		ENSG00000165633|ENST00000332853|VSTM4	ENSG00000165633|ENST00000332853|VSTM4	ENSG00000165633|ENST00000332853|VSTM4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2818603515625	2	598.39789	1194.78123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.719	1	97.76	97.26	98.26	0.040855								0	0	0	0.33984	1	24698	24698		0.40072	0.093686	1				10930	4095	7237	7289	14985	14985					0.1916280800755885
LLKQLKKLF	9	Unmodified	_LLKQLKKLF_					0	0	0			REV__ENSG00000214954|ENST00000448384|LRRC69	REV__ENSG00000214954|ENST00000448384|LRRC69	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8868408203125	2	565.886627	1129.7587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.719	1	67.719	67.219	68.219	0								0	0	0	0.28527	1	15715	15715		2.0598	0	1		+		10931	11012	7238	7290	14986	14986					0.19901208609917376
LLKREPDW	8	Unmodified	_LLKREPDW_					0	0	0		ENSG00000221869|ENST00000408965|CEBPD	ENSG00000221869|ENST00000408965|CEBPD	ENSG00000221869|ENST00000408965|CEBPD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2509155273438	2	528.795466	1055.57638	-0.41077	-0.00021721	-0.39705	-0.00020996	-0.80782	-0.00042717	528.7952702028439	42.421	0.81207	42.421	42.279	43.091	0					32	27	2	0	0	0	0.3576	1	8043	8043		4.756	0	1	89172			10932	5590	7239	7291	14987	14987					0.0508144919717779
LLLAKMENGS	10	Unmodified	_LLLAKMENGS_					0	0	0		nc|ENSG00000187048|Q02928-2|CYP4A11;nc|ENSG00000162365|Q5TCH4-2|CYP4A22;ENSG00000187048|ENST00000310638|CYP4A11;ENSG00000162365|ENST00000371891|CYP4A22	nc|ENSG00000187048|Q02928-2|CYP4A11	nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.771484375	2	538.294442	1074.57433	0.61655	0.00033189	0.3525	0.00018975	0.96905	0.00052164	538.2945757954906	77.501	0.62038	77.536	77.355	77.975	0.034485					42	21	3	0	0	0	0.31811	1	18676	18676		2.9952	0.69251	1	310710			10933	3820	7240	7292	14988	14988					0.040026523970709604
LLLAKMENGS	10	Unmodified	_LLLAKMENGS_					0	0	0		nc|ENSG00000187048|Q02928-2|CYP4A11;nc|ENSG00000162365|Q5TCH4-2|CYP4A22;ENSG00000187048|ENST00000310638|CYP4A11;ENSG00000162365|ENST00000371891|CYP4A22	nc|ENSG00000187048|Q02928-2|CYP4A11	nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	538.294442	1074.57433	0.35219	0.00018958	0.84373	0.00045418	1.1959	0.00064376	538.2946990625499	77.497	0.5391	77.497	77.389	77.928	0	-0.019337	0.00038504	NaN	2.9952	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391490			10934	3820	7240	7292							0.040026523970709604
LLLCAHCH	8	Unmodified	_LLLCAHCH_					0	0	0		ENST00000495786.1_1_19:55084740-55084827:+|nuORF	ENST00000495786.1_1_19:55084740-55084827:+|nuORF	ENST00000495786.1_1_19:55084740-55084827:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.22491455078125	2	455.225308	908.436063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.579	1	93.579	93.079	94.079	0								0	0	0	0.38822	1	23593	23593		0.79363	0	1				10935	6834	7241	7293	14989	14989					-0.02181749332396521
LLLCAHCH	8	Unmodified	_LLLCAHCH_					0	0	0		ENST00000495786.1_1_19:55084740-55084827:+|nuORF	ENST00000495786.1_1_19:55084740-55084827:+|nuORF	ENST00000495786.1_1_19:55084740-55084827:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2251281738281	2	455.225308	908.436063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.813	1	92.85	92.35	93.35	0.037369								0	0	0	0.38822	1	23199	23199		0.79363	0	1				10936	6834	7241	7293	14990	14990					-0.02181749332396521
LLLCFLIIE	9	Unmodified	_LLLCFLIIE_					0	0	0			REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7702026367188	2	538.824846	1075.63514	0.28988	0.0001562	-1.3554	-0.0007303	-1.0655	-0.0005741	539.3250994349172	86.203	0.13091	86.203	86.104	86.235	0					5	4	2	0	0	0	0.25174	1	21350	21350		7.2892	0	1	19393	+		10937	7919	7242	7294	14991	14991					0.10034789447308867
LLLFFVEFVLN	11	Unmodified	_LLLFFVEFVLN_					0	0	0			REV__ENST00000595222.5_1_19:56880178-56884554:+|nuORF	REV__ENST00000595222.5_1_19:56880178-56884554:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.93243408203125	3	451.93208	1352.77441	0.56311	0.00025449	0.81873	0.00037001	1.3818	0.0006245	451.9323735718666	91.662	0.68932	91.662	91.269	91.958	0					64	25	3	0	0	0	0.41359	1	23100	23100		1.2148	0.4383	1	269100	+		10938	12607	7243	7295	14992	14992					0.1121345033632224
LLLILTRPLKL	11	Unmodified	_LLLILTRPLKL_					0	0	0			REV__nc|ENSG00000204872|Q9UHF3|NAT8B	REV__nc|ENSG00000204872|Q9UHF3|NAT8B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	646.9577026367188	2	646.955041	1291.89553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.15	1	111.16	110.66	111.66	0.015678								0	0	0	0.34113	1	28346	28346		0.35063	0	1		+		10939	9485	7244	7296	14993	14993					0.26125697769634826
LLLIQITE	8	Unmodified	_LLLIQITE_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7957763671875	2	471.797143	941.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.4	1	102.4	101.9	102.9	0								0	0	0	0.38822	1	26275	26275		0.79363	0	1				10940	5401	7245	7297	14994	14994					0.106606992511729
LLLIQITE	8	Unmodified	_LLLIQITE_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.79559326171875	2	471.797143	941.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.17	1	105.17	104.67	105.67	0								0	0	0	0.38822	1	27083	27083		0.79363	0	1				10941	5401	7245	7297	14995	14995					0.106606992511729
LLLIQITE	8	Unmodified	_LLLIQITE_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7961730957031	2	471.797143	941.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.77	1	105.77	105.27	106.27	0								0	0	0	0.38822	1	27255	27255		0.79363	0	1				10942	5401	7245	7297	14996	14996					0.106606992511729
LLLIQITE	8	Unmodified	_LLLIQITE_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7955322265625	2	471.797143	941.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.56	1	92.597	92.097	93.097	0.03653								0	0	0	0.38822	1	23122	23122		0.79363	0	1				10943	5401	7245	7297	14997	14997					0.106606992511729
LLLKEPRD	8	Unmodified	_LLLKEPRD_					0	0	0			REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2992248535156	2	492.297842	982.581131	-0.012637	-6.2214E-06	2.9008	0.001428	2.8881	0.0014218	492.2991526206993	109.34	0.12708	109.34	109.3	109.42	0					35	19	2	0	0	0	0.53026	1	28143	28143		7.9102	0	1	540890	+		10944	10716	7246	7298	14998	14998					0.08914333339942004
LLLKEPRD	8	Unmodified	_LLLKEPRD_					0	0	0			REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2989196777344	2	492.297842	982.581131	0.29038	0.00014295	2.342	0.001153	2.6324	0.0012959	492.2988057435548	109.33	0.16983	109.34	109.29	109.46	0.019402					28	18	2	0	0	0	0.53026	1	27963	27963		7.9102	0	1	555210	+		10945	10716	7246	7298	14999	14999					0.08914333339942004
LLLKEPRD	8	Unmodified	_LLLKEPRD_					0	0	0			REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	492.297842	982.581131	-0.012637	-6.2214E-06	2.9008	0.001428	2.8881	0.0014218	492.2991526206993	109.34	0.12708	109.34	109.3	109.42	0	-0.0010777	0.00028159	NaN	7.9102	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540890	+		10946	10716	7246	7298							0.08914333339942004
LLLKEPRD	8	Unmodified	_LLLKEPRD_					0	0	0			REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.297842	982.581131	0.29038	0.00014295	2.342	0.001153	2.6324	0.0012959	492.2988057435548	109.33	0.16983	109.34	109.29	109.46	0.019402	0.0010777	-0.00026858	NaN	7.9102	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	555210	+		10947	10716	7246	7298							0.08914333339942004
LLLKIWKT	8	Unmodified	_LLLKIWKT_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000436575.5_1_7:6485721-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.3342590332031	2	507.839146	1013.66374	0.2401	0.00012193	-2.7176	-0.0013801	-2.4775	-0.0012581	508.3396332715745	109.47	0.37099	109.49	109.3	109.67	0.019402					74	39	3	0	0	0	0.3576	1	28020	28020		5.2307	0	1	1166300			10948	2780	7247	7299	15000	15000					0.15745275138749548
LLLLDNEL	8	Unmodified	_LLLLDNEL_					0	0	0		VPS13A|p.R2381L|1|0.42|ENSG00000197969|chr9:77344268-77344268|G/T|missense_variant	VPS13A|p.R2381L|1|0.42|ENSG00000197969|chr9:77344268-77344268|G/T|missense_variant	VPS13A|p.R2381L|1|0.42|ENSG00000197969|chr9:77344268-77344268|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7425842285156	2	471.778951	941.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.006	1	78.04	77.54	78.54	0.034485								0	0	0	0.38822	1	18697	18697		4.3292	0.38484	1				10949	13764	7248	7300	15001	15001					0.070238223544834
LLLLKKLT	8	Unmodified	_LLLLKKLT_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.8216247558594	2	471.341521	940.668489	-0.23742	-0.0001119	-2.8409	-0.001339	-3.0783	-0.0014509	471.34003678443094	112.01	0.11725	112.01	111.92	112.03	0					17	13	2	0	0	0	0.3576	1	28669	28669		0.79363	0	1	793900	+		10950	8112	7249	7301	15002	15002					0.19578159281491025
LLLLKKLT	8	Unmodified	_LLLLKKLT_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.3401794433594	2	471.341521	940.668489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.93	1	112.94	112.44	113.44	0.013817								0	0	0	0.38822	1	28826	28826		0.79363	0	1		+		10951	8112	7249	7301	15003	15003					0.19578159281491025
LLLLLLFLY	9	Unmodified	_LLLLLLFLY_					0	0	0			REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF	REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.871826171875	2	560.872654	1119.73076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.506	1	21.608	21.108	22.108	0.10178								0	0	0	0.29233	1	1776	1776		0.6015	0	1		+		10952	11488	7250	7302	15004	15004					0.1756788562984184
LLLLLLKRK	9	Unmodified	_LLLLLLKRK_					0	0	0			REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.287841796875	2	555.410269	1108.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.37	1	101.41	100.91	101.91	0.042656								0	0	0	0.29525	1	25806	25806		0	0	1		+		10953	11854	7251	7303	15005	15005					0.2559348788090574
LLLLLLKRK	9	Unmodified	_LLLLLLKRK_					0	0	0			REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8170776367188	2	555.410269	1108.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.41	1	106.44	105.94	106.94	0.029739								0	0	0	0.29525	1	27243	27243		0	0	1		+		10954	11854	7251	7303	15006	15006					0.2559348788090574
LLLLLLKRK	9	Unmodified	_LLLLLLKRK_					0	0	0			REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.4097900390625	2	555.410269	1108.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.93	114.43	115.43	0.013092								0	0	0	0.29525	1	29221	29221		0	0	1		+		10955	11854	7251	7303	15007	15007					0.2559348788090574
LLLLLLKRK	9	Unmodified	_LLLLLLKRK_					0	0	0			REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.751953125	2	555.410269	1108.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.01	1	116.02	115.52	116.52	0.013062								0	0	0	0.29525	1	29463	29463		0	0	1		+		10956	11854	7251	7303	15008	15008					0.2559348788090574
LLLLLLLLLLT	11	Unmodified	_LLLLLLLLLLT_					0	0	0			REV__ENST00000536100.1_1_12:133182714-133186967:-|nuORF	REV__ENST00000536100.1_1_12:133182714-133186967:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.310546875	2	625.956718	1249.89888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.097	1	55.097	54.597	55.597	0								0	0	0	0.34212	1	11867	11867		0	0	1		+		10957	10951	7252	7304	15009	15009					0.2839294782365869
LLLLLPWPM	9	Unmodified	_LLLLLPWPM_					0	0	0			REV__ENSG00000182704|ENST00000333090|TSKU	REV__ENSG00000182704|ENST00000333090|TSKU	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3184204101562	2	548.335381	1094.65621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.89	1	109.91	109.41	110.41	0.017242								0	0	0	0.28409	1	28104	28104		2.3027	0	1		+		10958	10573	7253	7305	15010	15010					0.11266799546820039
LLLLQIRKA	9	Unmodified	_LLLLQIRKA_					0	0	0		ENST00000451554.1_1_2:159145303-159312956:-|nuORF	ENST00000451554.1_1_2:159145303-159312956:-|nuORF	ENST00000451554.1_1_2:159145303-159312956:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.3690185546875	2	534.368601	1066.72265	0.48579	0.00025959	0.32462	0.00017347	0.81041	0.00043306	534.3688064981136	109.28	0.41001	109.3	109.24	109.65	0.019402					65	45	2	0	0	0	0.33704	2	28040	27992;28040		1.8442	0	1	659850			10959	6565	7254	7306	15011;15012	15012					0.19195751433085206
LLLLVVAVF	9	Unmodified	_LLLLVVAVF_					0	0	0		ENSG00000187244|ENST00000270233|BCAM	ENSG00000187244|ENST00000270233|BCAM	ENSG00000187244|ENST00000270233|BCAM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8349304199219	2	493.836071	985.65759	0.34857	0.00017214	-2.5313	-0.00125	-2.1827	-0.0010779	493.83472898673233	109.65	0.54836	109.66	109.12	109.67	0.017242					93	63	2	0	0	0	0.33356	1	28021	28021		2.3027	0	1	1823500			10960	5115	7255	7307	15013	15013					0.1641875690722827
LLLNFMIAAY	10	Unmodified	_LLLNFMIAAY_					0	0	0		nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB;ENST00000493538.5_1_2:25803688-25875529:-|nuORF;ENST00000472690.5_1_2:25819066-25872751:-|nuORF;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB	nc|ENSG00000138101|O60941-6|DTNB	nc|ENSG00000138101|O60941-6|DTNB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3236694335938	2	584.825378	1167.6362	0.86993	0.00050876	-0.38744	-0.00022658	0.48249	0.00028217	584.8255149543287	65.818	0.23672	65.885	65.788	66.025	0.066872					12	8	2	0	0	0	0.31616	1	15014	15014		10.074	4.3421	1	154100			10961	2892	7256	7308	15014	15014					0.059090038162139535
LLLPTEFSD	9	Unmodified	_LLLPTEFSD_					0	0	0		nc|ENSG00000198553|Q8N5I3-2|KCNRG;ENSG00000198553|ENST00000312942|KCNRG	nc|ENSG00000198553|Q8N5I3-2|KCNRG	nc|ENSG00000198553|Q8N5I3-2|KCNRG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.8179321289062	2	517.773865	1033.53318	0.39747	0.0002058	0.20448	0.00010587	0.60194	0.00031167	517.7739348558359	101.3	0.46043	101.3	101.09	101.55	0					40	27	2	0	0	0	0.25416	1	25964	25964		5.2307	0	1	80521			10962	5375	7257	7309	15015	15015					0.017752146292423276
LLLQVLEENLG	11	Unmodified	_LLLQVLEENLG_					0	0	0			REV__ENST00000495954.5_1_3:159557968-159614560:+|nuORF	REV__ENST00000495954.5_1_3:159557968-159614560:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.8594360351562	2	620.861003	1239.70745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.164	1	45.164	44.664	45.664	0								0	0	0	0.33939	1	8852	8852		0.96228	0.2719	1		+		10963	12182	7258	7310	15016	15016					0.09718795054573093
LLLSFRCLF	9	Unmodified	_LLLSFRCLF_					0	0	0		ENST00000455785.6_1_1:26226745-26227000:-|nuORF	ENST00000455785.6_1_1:26226745-26227000:-|nuORF	ENST00000455785.6_1_1:26226745-26227000:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.3182373046875	2	556.320263	1110.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.41	1	104.41	103.91	104.91	0								0	0	0	0.2722	1	26866	26866		4.756	0	1				10964	6585	7259	7311	15017	15017					0.07508440881611023
LLLSRESR	8	Unmodified	_LLLSRESR_					0	0	0		ENST00000397292.7_1_9:26947272-26947455:-|nuORF	ENST00000397292.7_1_9:26947272-26947455:-|nuORF	ENST00000397292.7_1_9:26947272-26947455:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2935791015625	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.831	1	95.831	95.331	96.331	0								0	0	0	0.38822	1	24277	24277		3.9444	0	1				10965	6349	7260	7312	15018	15018					0.08424565054428967
LLLTQCFTQQ	10	Unmodified	_LLLTQCFTQQ_					0	0	0			REV__nc|ENSG00000167306|Q9ULV0-2|MYO5B	REV__nc|ENSG00000167306|Q9ULV0-2|MYO5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8131103515625	2	597.812999	1193.61144	-0.0021507	-1.2857E-06	0.19658	0.00011752	0.19443	0.00011623	597.8131402849589	34.502	1.2625	34.502	34.274	35.537	0					152	47	5	0	0	0	0.44496	1	5912	5912		5.7319	0	1	1461300	+		10966	10113	7261	7313	15019	15019					0.022383239428108936
LLLTRLKR	8	Unmodified	_LLLTRLKR_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8531799316406	2	506.853119	1011.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.62	1	113.64	113.14	114.14	0.013817								0	0	0	0.38822	1	28971	28971		0.79363	0	1		+		10967	10236	7262	7314	15020	15020					0.18630598118829766
LLLTRLKR	8	Unmodified	_LLLTRLKR_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8524169921875	2	506.853119	1011.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.63	1	113.64	113.14	114.14	0.013817								0	0	0	0.38822	1	28973	28973		0.79363	0	1		+		10968	10236	7262	7314	15021	15021					0.18630598118829766
LLLYSFKAM	9	Unmodified	_LLLYSFKAM_					0	0	0			REV__ENST00000520114.1_1_8:38001793-38001934:-|nuORF	REV__ENST00000520114.1_1_8:38001793-38001934:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.8067626953125	2	543.306821	1084.59909	0.58687	0.00031885	2.1282	0.0011563	2.7151	0.0014751	543.3079827307438	98.988	0.35625	99.03	98.834	99.19	0.041931					32	24	2	0	0	0	0.24263	1	25061	25061		12.532	4.6214	1	114220	+		10969	12294	7263	7315	15022	15022					0.06017332270425868
LLMFLSSYA	9	Unmodified	_LLMFLSSYA_					0	0	0			REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF	REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.775390625	2	522.775354	1043.53615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.192	1	97.233	96.733	97.733	0.040855								0	0	0	0.27427	1	24538	24538		4.3292	0	1		+		10970	11521	7264	7316	15023	15023					0.01612766482412553
LLNSYILSSH	10	Unmodified	_LLNSYILSSH_					0	0	0			REV__nc|ENSG00000054116|O43617-2|TRAPPC3	REV__nc|ENSG00000054116|O43617-2|TRAPPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8133544921875	2	573.811313	1145.60807	0.38836	0.00022285	3.5012	0.002009	3.8895	0.0022318	573.8130951826322	78.563	0.4404	78.593	78.346	78.787	0.030151					34	14	4	0	0	0	0.42335	1	18861	18861		9.3831	1.473	1	164350	+		10971	8061	7265	7317	15024	15024					0.04109397160482331
LLPDQLVLL	9	Unmodified	_LLPDQLVLL_					0	0	0		chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.3261108398438	2	512.326068	1022.63758	0.57305	0.00029359	-0.24822	-0.00012717	0.32483	0.00016642	512.3258500616843	97.863	0.68591	97.904	97.614	98.3	0.040855					92	35	3	0	0	0	0.14091	1	24707	24707		25.399	2.663	1	1495000			10972	187	7266	7318	15025	15025					0.12716961176613495
LLPDQLVLL	9	Unmodified	_LLPDQLVLL_					0	0	0		chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.326068	1022.63758	0.60757	0.00031127	-0.26458	-0.00013555	0.34298	0.00017572	512.3258309531603	97.896	0.63091	97.896	97.615	98.246	0	-0.0035046	-7.3196E-06	NaN	25.399	99	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1255300			10973	187	7266	7318							0.12716961176613495
LLPDQLVLL	9	Unmodified	_LLPDQLVLL_					0	0	0		chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.326068	1022.63758	0.57305	0.00029359	-0.24822	-0.00012717	0.32483	0.00016642	512.3258500616843	97.863	0.68591	97.904	97.614	98.3	0.040855	0.0035046	9.4524E-06	NaN	25.399	92	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1495000			10974	187	7266	7318							0.12716961176613495
LLPFCIRCV	9	Unmodified	_LLPFCIRCV_					0	0	0		ENST00000326925.10_1_3:49060685-49060871:+|nuORF	ENST00000326925.10_1_3:49060685-49060871:+|nuORF	ENST00000326925.10_1_3:49060685-49060871:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2935180664062	2	532.293191	1062.57183	0.42466	0.00022604	0.75076	0.00039962	1.1754	0.00062567	532.293563196456	91.637	0.87263	91.672	91.254	92.127	0.035439					87	31	4	0	0	0	0.083504	1	22806	22806		36.044	36.044	1	1580800			10975	6045	7267	7319	15026	15026					0.04304525458405806
LLPFIAYYM	9	Unmodified	_LLPFIAYYM_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8001098632812	2	565.801371	1129.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.586	1	17.586	17.086	18.086	0								0	0	0	0.29233	1	949	949		0.6015	0	1				10976	3357	7268	7320	15027	15027					0.028579298961403765
LLPFSVEAL	9	Unmodified	_LLPFSVEAL_					0	0	0		MSX1|p.E234Sfs*5|1|0.13|ENSG00000163132|chr4:4862931-4862931|G/-|frameshift_variant;ENSG00000163132|ENST00000382723|MSX1	MSX1|p.E234Sfs*5|1|0.13|ENSG00000163132|chr4:4862931-4862931|G/-|frameshift_variant	MSX1|p.E234Sfs*5|1|0.13|ENSG00000163132|chr4:4862931-4862931|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7894287109375	2	494.789318	987.564084	0.38077	0.0001884	-0.035146	-1.739E-05	0.34563	0.00017101	494.7891889737003	87.788	0.99168	87.818	87.311	88.303	0.030037					83	36	4	0	0	0	0.14091	1	21724	21724		25.399	9.5521	1	1317000			10977	3881	7269	7321	15028	15028					0.06980412734139918
LLPHEELL	8	Unmodified	_LLPHEELL_					0	0	0		ENST00000336095.10_1_20:3914522-3914756:-|nuORF	ENST00000336095.10_1_20:3914522-3914756:-|nuORF	ENST00000336095.10_1_20:3914522-3914756:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.78106689453125	2	482.279118	962.543683	0.22076	0.00010647	-0.23088	-0.00011135	-0.010112	-4.8767E-06	482.2789050465539	55.562	0.51845	55.562	55.347	55.866	0					35	17	3	0	0	0	0.50159	1	11989	11989		12.532	0	1	183240			10978	6073	7270	7322	15029	15029					0.06091242074330694
LLPLLSHPGW	10	Unmodified	_LLPLLSHPGW_					0	0	0		ENST00000415899.1_3_1:204463491-204463809:-|nuORF	ENST00000415899.1_3_1:204463491-204463809:-|nuORF	ENST00000415899.1_3_1:204463491-204463809:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.297607421875	2	566.829309	1131.64407	0.20921	0.00011859	-0.92581	-0.00052478	-0.7166	-0.00040619	566.8286114880158	78.339	0.85658	78.339	78.097	78.954	0					59	29	3	0	0	0	0.31585	1	18952	18952		10.824	10.824	1	345450			10979	6418	7271	7323	15030	15030					0.08350899127981393
LLPLLSHPGW	10	Unmodified	_LLPLLSHPGW_					0	0	0		ENST00000415899.1_3_1:204463491-204463809:-|nuORF	ENST00000415899.1_3_1:204463491-204463809:-|nuORF	ENST00000415899.1_3_1:204463491-204463809:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2975463867188	2	566.829309	1131.64407	0.39268	0.00022258	-0.62785	-0.00035588	-0.23517	-0.0001333	566.8288230093458	78.296	0.8783	78.326	78.112	78.99	0.030151					50	30	3	0	0	0	0.31585	1	18787	18787		10.824	0.75	1	429240			10980	6418	7271	7323	15031	15031					0.08350899127981393
LLPLSEWVC	9	Unmodified	_LLPLSEWVC_					0	0	0			REV__ENST00000371711.4_1_20:48251667-48252051:-|nuORF	REV__ENST00000371711.4_1_20:48251667-48252051:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.313232421875	2	530.280803	1058.54705	0.39734	0.0002107	-0.26314	-0.00013954	0.1342	7.1162E-05	530.2804097773303	87.539	0.39268	87.539	87.374	87.767	0					20	14	2	0	0	0	0.25579	1	21807	21807		4.3292	2.2695	1	36438	+		10981	11600	7272	7324	15032	15032					0.020121688566632656
LLPNHSYVF	9	Unmodified	_LLPNHSYVF_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7657470703125	2	545.290017	1088.56548	0.44368	0.00024194	-0.3494	-0.00019053	0.09428	5.141E-05	545.2899980608901	55.421	0.43752	55.486	55.292	55.73	0.065128					34	16	3	0	0	0	0.1789	1	11846	11846		22.736	0	1	177400			10982	2575	7273	7325	15033	15033					0.024740468228856116
LLPNIFFTI	9	Unmodified	_LLPNIFFTI_					0	0	0		ENST00000508980.5_1_6:86270935-86284080:-|nuORF;SNX14|p.G528Wfs*4|1|0.29|ENSG00000135317|chr6:85536818-85536819|-/A|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	ENST00000508980.5_1_6:86270935-86284080:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3204345703125	2	539.320786	1076.62702	0.2033	0.00010965	-0.40083	-0.00021617	-0.19752	-0.00010653	539.320464483784	104.1	0.36174	104.1	103.89	104.26	0					42	34	2	0	0	0	0.30005	1	26821	26821		6.7232	2.7788	1	44505			10983	2722	7274	7326	15034	15034					0.0917697852216861
LLPRFSDLI	9	Unmodified	_LLPRFSDLI_					0	0	0		ENST00000354258.4_1_6:32821644-32821716:-|nuORF	ENST00000354258.4_1_6:32821644-32821716:-|nuORF	ENST00000354258.4_1_6:32821644-32821716:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7716674804688	2	537.321317	1072.62808	0.33548	0.00018026	0.03647	1.9596E-05	0.37195	0.00019986	537.3212757173948	78.134	0.49003	78.134	77.958	78.448	0					32	16	3	0	0	0	0.23598	1	18890	18890		15.847	0	1	156040			10984	6112	7275	7327	15035	15035					0.09467192891088416
LLPSRQFGF	9	Unmodified	_LLPSRQFGF_					0	0	0		ENST00000569365.6_1_16:18794333-18800349:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7979736328125	2	532.798009	1063.58147	0.072515	3.8636E-05	0.01326	7.0651E-06	0.085776	4.5701E-05	532.7978423365228	59.038	0.89039	59.038	58.79	59.68	0					75	33	3	0	0	0	0.064247	2	13075	13029;13075		40.239	14.38	1	664740			10985	2668	7276	7328	15036;15037	15037					0.05221753059799994
LLPSRQFGF	9	Unmodified	_LLPSRQFGF_					0	0	0		ENST00000569365.6_1_16:18794333-18800349:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.798095703125	2	532.798009	1063.58147	0.34858	0.00018572	-0.18094	-9.6405E-05	0.16764	8.9318E-05	532.7977385349989	58.916	1.015	58.986	58.658	59.673	0.070477					77	38	3	0	0	0	0.14091	1	12923	12923		25.399	4.9457	1	684130			10986	2668	7276	7328	15038	15038					0.05221753059799994
LLPWDPLSRSW	11	Unmodified	_LLPWDPLSRSW_					0	0	0		ENST00000223054.8_2_7:100210367-100210535:+|nuORF	ENST00000223054.8_2_7:100210367-100210535:+|nuORF	ENST00000223054.8_2_7:100210367-100210535:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7558288574219	3	457.24695	1368.71902	0.58265	0.00026641	-1.0363	-0.00047387	-0.4537	-0.00020745	457.58072123033884	68.868	0.46272	68.868	68.669	69.132	0					25	17	2	0	0	0	0.31087	1	16126	16126		2.8433	0.21205	1	58593			10987	5802	7277	7329	15039	15039					0.049410368685585127
LLQEEPLF	8	Unmodified	_LLQEEPLF_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7712097167969	2	494.771126	987.527698	0.77743	0.00038465	0.15759	7.7973E-05	0.93502	0.00046262	494.7711558196622	80.36	0.55099	80.383	80.157	80.708	0.023605					40	19	3	0	0	0	0.52502	1	19481	19481		9.3474	0	1	218320			10988	406	7278	7330	15040	15040					0.0334353583742768
LLQIFDAVIVH	11	Unmodified	_LLQIFDAVIVH_					0	0	0		ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.9061279296875	2	634.374081	1266.73361	-0.17321	-0.00010988	1.8642	0.0011826	1.691	0.0010727	634.3759699067871	107.95	0.058075	107.95	107.91	107.97	0					6	5	2	0	0	0	0.3105	1	27847	27847		2.9952	0	1	3281000			10989	1331	7279	7331	15041	15041					0.11091109016683731
LLQYVYNL	8	Unmodified	_LLQYVYNL_					0	0	0		chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4;ENSG00000104738|ENST00000649973|MCM4	chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4	chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2869873046875	2	513.286943	1024.55933	0.19492	0.00010005	0.044011	2.259E-05	0.23893	0.00012264	513.2868762318052	51.426	0.50002	51.426	51.152	51.652	0					50	16	4	0	0	0	0.52502	1	10758	10758		9.3474	0	1	556850			10990	186	7280	7332	15042	15042					0.04803528591378381
LLQYVYNL	8	Unmodified	_LLQYVYNL_					0	0	0		chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4;ENSG00000104738|ENST00000649973|MCM4	chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4	chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2868041992188	2	513.286943	1024.55933	0.29514	0.00015149	-0.12824	-6.5824E-05	0.1669	8.5669E-05	513.286757921303	51.351	0.50415	51.421	51.18	51.684	0.069874					61	19	4	0	0	0	0.52502	1	10570	10570		9.3474	0	1	520650			10991	186	7280	7332	15043	15043					0.04803528591378381
LLRMANRLF	9	Unmodified	_LLRMANRLF_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3344116210938	2	567.334236	1132.65392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.52	1	116.53	116.03	117.03	0.013062								0	0	0	0.2927	1	29549	29549		0.52476	0	1				10992	2260	7281	7333	15044	15044					0.09289763861693245
LLRPGARK	8	Unmodified	_LLRPGARK_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9-3|MGA	REV__nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.80084228515625	2	455.800886	909.587219	0.18191	8.2914E-05	-0.11835	-5.3946E-05	0.063555	2.8968E-05	455.8007909867183	109.52	0.21631	109.54	109.44	109.65	0.019402					44	21	3	0	0	0	0.53345	1	28013	28013		5.7604	0	1	1398100	+		10993	10340	7282	7334	15045	15045					0.1288089636212817
LLRTWLTF	8	Unmodified	_LLRTWLTF_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3109130859375	2	525.310752	1048.60695	0.42796	0.00022481	0.012185	6.4007E-06	0.44015	0.00023121	525.3106757970738	75.038	0.82127	75.038	74.767	75.589	0					72	30	3	0	0	0	0.46914	1	17922	17922		16.942	0	1	760420	+		10994	10888	7283	7335	15046	15046					0.08459227582216045
LLSDESSEADS	11	Unmodified	_LLSDESSEADS_					0	0	0		INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant;ENSG00000128908|ENST00000648947|INO80	INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant	INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.7490844726562	2	576.748773	1151.48299	0.58285	0.00033616	1.8201	0.0010497	2.4029	0.0013859	576.7496779628558	98.147	0.58265	98.147	97.929	98.512	0					52	31	2	0	0	0	0.34344	1	24963	24963		13.042	0.80181	1	265620			10995	2412	7284	7336	15047	15047					-0.08668984557220938
LLSGLLMFFFV	11	Unmodified	_LLSGLLMFFFV_					0	0	0			REV__nc|ENSG00000141873|Q9BRY0-2|SLC39A3	REV__nc|ENSG00000141873|Q9BRY0-2|SLC39A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3635864257812	2	643.864503	1285.71445	0.17786	0.00011452	-3.3176	-0.0021361	-3.1397	-0.0020216	643.8647127142139	108.26	0.45947	108.28	108.24	108.7	0.022232					78	65	2	0	0	0	0.3105	1	27743	27743		5.7319	0	1	4378700	+		10996	9416	7285	7337	15048	15048					0.08302436401413615
LLSGLLMFFFV	11	Unmodified	_LLSGLLMFFFV_					0	0	0			REV__nc|ENSG00000141873|Q9BRY0-2|SLC39A3	REV__nc|ENSG00000141873|Q9BRY0-2|SLC39A3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	643.864503	1285.71445	-0.10347	-6.6621E-05	-6.1269	-0.0039449	-6.2303	-0.0040115	644.361327042769	107.89	0.030487	107.89	107.87	107.9	0	-0.1965	-0.0022591	NaN	5.7319	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4985500	+		10997	9416	7285	7337							0.08302436401413615
LLSGSPTSVL	10	Unmodified	_LLSGSPTSVL_					0	0	0		ENST00000520019.1_1_5:179229676-179233279:-|nuORF	ENST00000520019.1_1_5:179229676-179233279:-|nuORF	ENST00000520019.1_1_5:179229676-179233279:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.28173828125	2	487.281857	972.549162	0.5409	0.00026357	-0.51066	-0.00024883	0.030239	1.4735E-05	487.28166804965815	81.896	0.37608	81.896	81.69	82.066	0					19	12	2	0	0	0	0.34138	1	20035	20035		18.146	0	1	132150			10998	6950	7286	7338	15049	15049					0.061789208661252815
LLSIEEMLI	9	Unmodified	_LLSIEEMLI_					0	0	0		ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772|FPGT;nc|ENSG00000254685|O14772-2|FPGT	ENSG00000254685|ENST00000370898|FPGT	ENSG00000254685|ENST00000370898|FPGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.801513671875	2	530.801568	1059.58858	0.29655	0.00015741	-0.10508	-5.5779E-05	0.19147	0.00010163	530.8013536704989	95.145	0.71925	95.145	94.974	95.693	0					67	32	3	0	0	0	0.20367	1	24160	24160		18.135	0	1	704150			10999	5694	7287	7339	15050	15050					0.06117304825352221
LLSIEEMLI	9	Unmodified	_LLSIEEMLI_					0	0	0		ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772|FPGT;nc|ENSG00000254685|O14772-2|FPGT	ENSG00000254685|ENST00000370898|FPGT	ENSG00000254685|ENST00000370898|FPGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8015747070312	2	530.801568	1059.58858	0.28611	0.00015187	-0.0059954	-3.1824E-06	0.28012	0.00014869	530.8014319971662	95.151	0.4962	95.19	94.981	95.477	0.038872					57	20	3	0	0	0	0.20367	1	23986	23986		18.135	0	1	766040			11000	5694	7287	7339	15051	15051					0.06117304825352221
LLSLWYLL	8	Unmodified	_LLSLWYLL_					0	0	0		ENST00000494883.1_1_9:134396759-134397813:+|nuORF;nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENST00000494883.1_1_9:134396759-134397813:+|nuORF	ENST00000494883.1_1_9:134396759-134397813:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8080749511719	2	510.810054	1019.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.467	1	71.526	71.026	72.026	0.058578								0	0	0	0.38796	1	16699	16699		14.582	1.0738	1				11001	2487	7288	7340	15052	15052					0.09653593493464996
LLSQHKIEP	9	Unmodified	_LLSQHKIEP_					0	0	0			REV__ENSG00000081026|ENST00000307546|MAGI3	REV__ENSG00000081026|ENST00000307546|MAGI3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8086547851562	2	532.808574	1063.60259	0.26015	0.00013861	-0.17788	-9.4774E-05	0.082271	4.3835E-05	532.8083820643353	34.854	0.60321	34.931	34.733	35.336	0.076244					53	24	3	0	0	0	0.24021	1	5645	5645		13.906	5.7505	1	204710	+		11002	8233	7289	7341	15053	15053					0.07333718368658992
LLSVHPSSPLL	11	Unmodified	_LLSVHPSSPLL_					0	0	0			REV__ENST00000469897.1_1_7:99051318-99054120:+|nuORF	REV__ENST00000469897.1_1_7:99051318-99054120:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2911987304688	2	581.845156	1161.67576	0.52255	0.00030405	-1.4232	-0.00082807	-0.90062	-0.00052402	582.3453158745533	68.134	0.64375	68.134	67.973	68.617	0					28	22	2	0	0	0	0.31076	1	15925	15925		1.3295	0	1	74201	+		11003	12025	7290	7342	15054	15054					0.10138847091275238
LLSYIVQLL	9	Unmodified	_LLSYIVQLL_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3341674804688	2	531.333893	1060.65323	0.48315	0.00025672	0.278	0.00014771	0.76115	0.00040443	531.3339520852451	99.744	1.0671	99.744	99.485	100.55	0					90	58	2	0	0	0	0.033885	1	25423	25423		48.346	4.4876	1	830620	+		11004	8179	7291	7343	15055	15055					0.12533247693659177
LLSYVHFLL	9	Unmodified	_LLSYVHFLL_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2574462890625	2	552.826235	1103.63792	0.59313	0.0003279	-0.22524	-0.00012452	0.36789	0.00020338	552.8260966650303	78.453	0.70095	78.484	78.317	79.018	0.030159					54	24	5	0	0	0	0.25504	1	18986	18986		2.0598	0	1	505970			11005	4679	7292	7344	15056	15056					0.09024380896471484
LLTGQLLLL	9	Unmodified	_LLTGQLLLL_					0	0	0			REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF	REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.32855224609375	2	492.328611	982.642668	0.31206	0.00015363	0.090493	4.4552E-05	0.40255	0.00019819	492.32854504090176	90.503	0.72666	90.503	90.184	90.911	0					58	27	3	0	0	0	0.083124	1	22654	22654		36.127	0	1	357470	+		11006	11775	7293	7345	15057	15057					0.1506526503923169
LLTGQLLLL	9	Unmodified	_LLTGQLLLL_					0	0	0			REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF	REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.32867431640625	2	492.328611	982.642668	0.038199	1.8806E-05	0.26527	0.0001306	0.30347	0.00014941	492.3286637550166	90.383	0.71249	90.417	90.195	90.907	0.034065					65	29	3	0	0	0	0.021119	2	22469	22429;22469		57.471	0	1	595790	+		11007	11775	7293	7345	15058;15059	15059					0.1506526503923169
LLTGQLLLL	9	Unmodified	_LLTGQLLLL_					0	0	0			REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF	REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.328611	982.642668	0.038199	1.8806E-05	0.26527	0.0001306	0.30347	0.00014941	492.3286637550166	90.383	0.71249	90.417	90.195	90.907	0.034065	-0.042945	8.2379E-05	NaN	57.471	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595790	+		11008	11775	7293	7345							0.1506526503923169
LLTPSSHLL	9	Unmodified	_LLTPSSHLL_					0	0	0		ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7923583984375	2	490.792392	979.570232	0.45429	0.00022296	-0.084831	-4.1634E-05	0.36946	0.00018133	490.79225170298963	68.082	0.92026	68.145	67.874	68.794	0.063499					77	34	3	0	0	0	0.29576	1	15775	15775		7.2892	0	1	727480			11009	6906	7294	7346	15060	15060					0.07962930965663872
LLTSLLCPF	9	Unmodified	_LLTSLLCPF_					0	0	0		ENST00000588000.5_1_19:46124203-46142634:-|nuORF	ENST00000588000.5_1_19:46124203-46142634:-|nuORF	ENST00000588000.5_1_19:46124203-46142634:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7403564453125	2	503.785721	1005.55689	0.32155	0.00016199	-0.68452	-0.00034485	-0.36297	-0.00018286	504.2871915240134	62.578	0.37198	62.65	62.534	62.906	0.072697					18	12	2	0	0	0	0.24263	1	14032	14032		12.532	0	1	46986			11010	7247	7295	7347	15061	15061					0.0543335686206774
LLTSTFVKP	9	Unmodified	_LLTSTFVKP_					0	0	0			REV__ENST00000312858.9_3_14:76644237-76662256:+|nuORF	REV__ENST00000312858.9_3_14:76644237-76662256:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.3060607910156	2	503.302593	1004.59063	0.40165	0.00020215	2.1748	0.0010946	2.5764	0.0012967	503.30394933422764	70.982	0.94699	70.982	70.555	71.502	0					68	32	3	0	0	0	0.29576	1	16583	16583		7.2892	0	1	676410	+		11011	11377	7296	7348	15062	15062					0.08852101625484465
LLTSVARLSF	10	Unmodified	_LLTSVARLSF_					0	0	0			REV__ENSG00000162460|ENST00000375782|TMEM82	REV__ENSG00000162460|ENST00000375782|TMEM82	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8299560546875	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.87	1	81.87	81.37	82.37	0								0	0	0	0.33711	1	20032	20032		3.5965	0	1		+		11012	9888	7297	7349	15063	15063					0.10094577919812764
LLVCGFLYQF	10	Unmodified	_LLVCGFLYQF_					0	0	0		ENSG00000118017|ENST00000236709|A4GNT	ENSG00000118017|ENST00000236709|A4GNT	ENSG00000118017|ENST00000236709|A4GNT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3170776367188	2	601.817553	1201.62055	0.44407	0.00026725	-2.8312	-0.0017039	-2.3871	-0.0014366	601.8166328728003	96.229	0.36229	96.229	95.936	96.299	0					29	18	2	0	0	0	0.37232	1	24371	24371		14.838	0.93222	1	128140			11013	2024	7298	7350	15064	15064					0.0278071729912881
LLVCGFLYQF	10	Unmodified	_LLVCGFLYQF_					0	0	0		ENSG00000118017|ENST00000236709|A4GNT	ENSG00000118017|ENST00000236709|A4GNT	ENSG00000118017|ENST00000236709|A4GNT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8168334960938	2	601.817553	1201.62055	0.46898	0.00028224	-3.5962	-0.0021643	-3.1272	-0.001882	601.8160011090582	96.08	0.36437	96.12	95.891	96.256	0.039772					25	18	2	0	0	0	0.37232	1	24227	24227		14.838	0.93222	1	89908			11014	2024	7298	7350	15065	15065					0.0278071729912881
LLVLLTIKIKL	11	Unmodified	_LLVLLTIKIKL_					0	0	0		tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.9593505859375	2	633.959792	1265.90503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.54	1	115.55	115.05	116.05	0.013092								0	0	0	0.34212	1	29371	29371		0	0	1				11015	13489	7299	7351	15066	15066					0.2827146605516191
LLWDGSNEIP	10	Unmodified	_LLWDGSNEIP_					0	0	0			REV__ENST00000505678.6_2_5:43602822-43609347:+|nuORF	REV__ENST00000505678.6_2_5:43602822-43609347:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.2718505859375	2	572.287671	1142.56079	0.42353	0.00024238	-1.407	-0.00080519	-0.98344	-0.00056281	572.2875756369363	64.378	0.10471	64.448	64.375	64.48	0.070526					5	3	2	0	0	0	0.31747	1	14530	14530		5.7319	0	1	35402	+		11016	11254	7300	7352	15067	15067					-0.004788821105421448
LLWEIFSL	8	Unmodified	_LLWEIFSL_					0	0	0		ENSG00000037280|ENST00000261937|FLT4;nc|ENSG00000037280|P35916-1|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;ENSG00000122025|ENST00000241453|FLT3;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000122025|P36888-2|FLT3;ENSG00000062524|ENST00000263800|LTK;ENST00000380987.2_1_13:28578191-28599431:-|nuORF;ENST00000563518.5_1_15:41796702-41799561:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000102755|P17948-5|FLT1;nc|ENSG00000102755|P17948-6|FLT1;nc|ENSG00000102755|P17948-8|FLT1;nc|ENSG00000102755|P17948-7|FLT1;nc|ENSG00000062524|P29376-4|LTK;ENSG00000102755|ENST00000282397|FLT1;ENSG00000128052|ENST00000263923|KDR;ENSG00000134853|ENST00000257290|PDGFRA;ENSG00000171094|ENST00000389048|ALK	ENSG00000037280|ENST00000261937|FLT4;ENSG00000102755|ENST00000282397|FLT1;ENSG00000128052|ENST00000263923|KDR;ENSG00000134853|ENST00000257290|PDGFRA;ENSG00000171094|ENST00000389048|ALK	ENSG00000037280|ENST00000261937|FLT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2933044433594	2	510.791861	1019.56917	0.079167	4.0438E-05	-0.45934	-0.00023463	-0.38017	-0.00019419	510.7918359130377	105.08	0.18396	105.08	104.93	105.12	0					20	16	2	0	0	0	0.39599	1	27060	27060		26.884	2.8631	1	61560			11017	522;1325;2383;2694;4424	7301	7353	15068	15068					0.060167165967413894
LLWKRPFF	8	Unmodified	_LLWKRPFF_					0	0	0			REV__ENST00000240333.10_1_17:47785368-47785530:-|nuORF	REV__ENST00000240333.10_1_17:47785368-47785530:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.829833984375	2	553.829112	1105.64367	0.65873	0.00036482	1.4229	0.00078806	2.0817	0.0011529	553.8297237833789	97.329	0.26225	97.329	97.176	97.438	0					20	10	2	0	0	0	0.54081	1	24723	24723		0.79363	0.19213	1	77277	+		11018	11198	7302	7354	15069	15069					0.09507524198784267
LLYGRAPLF	9	Unmodified	_LLYGRAPLF_					0	0	0			REV__ENST00000414656.1_1_9:139700878-139703284:-|nuORF	REV__ENST00000414656.1_1_9:139700878-139703284:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3111572265625	2	525.310752	1048.60695	0.42796	0.00022481	0.012185	6.4007E-06	0.44015	0.00023121	525.3106757970738	75.038	0.82127	75.038	74.767	75.589	0					72	30	3	0	0	0	0.14718	1	18016	18016		24.674	4.2203	1	760420	+		11019	11794	7303	7355	15070	15070					0.08459227582216045
LLYGTLEER	9	Unmodified	_LLYGTLEER_					0	0	0			REV__ENST00000588708.5_1_19:38900682-38904049:-|nuORF	REV__ENST00000588708.5_1_19:38900682-38904049:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.80078125	2	547.298039	1092.58152	-0.2157	-0.00011805	-0.025842	-1.4143E-05	-0.24154	-0.0001322	547.2979031251044	22.948	0.33782	22.948	22.84	23.178	0					50	31	2	0	0	0	0.34646	1	2317	2317		0.6015	0	1	21962	+		11020	10272	7304	7356	15071	15071					0.038937082691290925
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3613891601562	2	642.360973	1282.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.64	1	106.66	106.16	107.16	0.025711								0	0	0	0.33877	1	27304	27304		1.6526	0.17072	1		+		11021	12612	7305	7357	15072	15072					0.07734839845215902
LLYKLLKLLK	10	Unmodified	_LLYKLLKLLK_					0	0	0			REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.9373168945312	2	622.93886	1243.86317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.81	1	112.83	112.33	113.33	0.013817								0	0	0	0.34018	1	28794	28794		0	0	1		+		11022	12248	7306	7358	15073	15073					0.2509891036663703
LLYKLLKLLK	10	Unmodified	_LLYKLLKLLK_					0	0	0			REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.9369506835938	2	622.93886	1243.86317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.07	1	113.08	112.58	113.58	0.013817								0	0	0	0.34018	1	28860	28860		0	0	1		+		11023	12248	7306	7358	15074	15074					0.2509891036663703
LLYLFSMMKRF	11	Unmodified	_LLYLFSMMKRF_					0	0	0		ENST00000306434.7_1_2:85769027-85769380:+|nuORF	ENST00000306434.7_1_2:85769027-85769380:+|nuORF	ENST00000306434.7_1_2:85769027-85769380:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.9326477050781	3	483.597938	1447.77198	-0.20462	-9.8955E-05	0.27731	0.00013411	0.072688	3.5152E-05	483.5981633161564	45.647	0.36497	45.732	45.549	45.914	0.085617					30	13	3	0	0	0	0.41359	1	8897	8897		1.2148	0	1	53863			11024	5986	7307	7359	15075	15075					0.06600955335329672
LLYRDLSQAM	10	Unmodified	_LLYRDLSQAM_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.88116455078125	3	403.881391	1208.62234	0.029099	1.1753E-05	-1.0004	-0.00040406	-0.97133	-0.0003923	403.880986853658	44.596	0.52862	44.596	44.329	44.857	0					36	18	3	0	0	0	0.43972	1	8745	8745		3.5871	0	1	119310			11025	2405	7308	7360	15076	15076					0.02637726317107081
LLYTDRNF	8	Unmodified	_LLYTDRNF_					0	0	0		ENST00000481900.5_1_1:91844026-91850765:-|nuORF;HFM1|p.C500Afs*12|1|0.16|ENSG00000162669|chr1:91375626-91375626|G/-|frameshift_variant;ENSG00000162669|ENST00000370425|HFM1	ENST00000481900.5_1_1:91844026-91850765:-|nuORF	ENST00000481900.5_1_1:91844026-91850765:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2701416015625	2	521.271824	1040.5291	0.19086	9.9489E-05	-1.2159	-0.00063384	-1.0251	-0.00053435	521.2709585029633	50.613	0.24852	50.613	50.514	50.762	0					14	8	2	0	0	0	0.3576	1	10544	10544		7.9102	0	1	112130			11026	3847	7309	7361	15077	15077					0.010451699261693648
LMACRILII	9	Unmodified	_LMACRILII_					0	0	0			REV__ENSG00000124102|ENST00000243924|PI3	REV__ENSG00000124102|ENST00000243924|PI3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3168334960938	2	523.316666	1044.61878	0.5807	0.00030389	0.91604	0.00047938	1.4967	0.00078327	523.3167148731927	97.896	0.41076	97.896	97.705	98.116	0					31	22	2	0	0	0	0.17247	1	24896	24896		21.747	6.4982	1	117710	+		11027	8942	7310	7362	15078	15078					0.09825385009571619
LMACRILII	9	Unmodified	_LMACRILII_					0	0	0			REV__ENSG00000124102|ENST00000243924|PI3	REV__ENSG00000124102|ENST00000243924|PI3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	523.316666	1044.61878	0.5807	0.00030389	0.91604	0.00047938	1.4967	0.00078327	523.3167148731927	97.896	0.41076	97.896	97.705	98.116	0	0.0046283	-6.3028E-05	NaN	21.747	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117710	+		11028	8942	7310	7362							0.09825385009571619
LMACRILII	9	Unmodified	_LMACRILII_					0	0	0			REV__ENSG00000124102|ENST00000243924|PI3	REV__ENSG00000124102|ENST00000243924|PI3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	523.316666	1044.61878	0.47502	0.00024859	1.0467	0.00054773	1.5217	0.00079632	523.3167116822889	97.846	0.368	97.887	97.755	98.123	0.040855	-0.0046283	7.3684E-05	NaN	21.747	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182860	+		11029	8942	7310	7362							0.09825385009571619
LMADVVYCPH	10	Unmodified	_LMADVVYCPH_					0	0	0		ENST00000427378.1_1_7:134813580-134814228:+|nuORF	ENST00000427378.1_1_7:134813580-134814228:+|nuORF	ENST00000427378.1_1_7:134813580-134814228:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.267578125	2	574.26737	1146.52019	0.66691	0.00038299	-0.12203	-7.0078E-05	0.54488	0.00031291	574.2670424240714	65.579	1.6618	65.579	64.973	66.635	0					93	60	2	0	0	0	0.3198	1	15060	15060		20.454	2.3073	1	606840			11030	6477	7311	7363	15079	15079					-0.0472126302615834
LMAEISNLK	9	Unmodified	_LMAEISNLK_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.784423828125	2	509.78371	1017.55287	0.23658	0.00012061	0.37378	0.00019055	0.61036	0.00031115	510.2852721760814	94.851	0.34592	94.89	94.742	95.088	0.038544					31	14	4	0	0	0	0.20358	1	23862	23862		18.146	0	1	73129			11031	1683	7312	7364	15080	15080					0.04479267368355977
LMAPRPWL	8	Unmodified	_LMAPRPWL_					0	0	0		ENST00000336854.8_1_12:52470999-52471077:+|nuORF	ENST00000336854.8_1_12:52470999-52471077:+|nuORF	ENST00000336854.8_1_12:52470999-52471077:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.279296875	2	492.278398	982.542243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.518	1	67.583	67.083	68.083	0.065071								0	0	0	0.38822	1	15499	15499		10.183	4.9527	1				11032	6075	7313	7365	15081	15081					0.05027329504582667
LMAVYLWR	8	Unmodified	_LMAVYLWR_					0	0	0			REV__ENST00000505842.5_1_4:25404608-25415394:+|nuORF	REV__ENST00000505842.5_1_4:25404608-25415394:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2929077148438	2	526.291505	1050.56846	-0.17702	-9.3166E-05	2.7715	0.0014586	2.5945	0.0013654	526.2927257625233	30.795	0.25595	30.869	30.77	31.026	0.073782					13	12	2	0	0	0	0.54081	1	4417	4417		0.79363	0.19213	1	11598	+		11033	8059	7314	7366	15082	15082					0.04519598676051828
LMCCWIQF	8	Unmodified	_LMCCWIQF_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|214|1|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|214|1|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|214|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.24609375	2	522.229202	1042.44385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.918	1	72.918	72.418	73.418	0								0	0	0	0.38822	1	17296	17296		6.3541	0	1				11034	7399	7315	7367	15083	15083					-0.07567358127130319
LMCPFGLR	8	Unmodified	_LMCPFGLR_					0	0	0			REV__ENST00000514665.1_1_4:120141358-120141406:+|nuORF	REV__ENST00000514665.1_1_4:120141358-120141406:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.74310302734375	2	468.743334	935.472114	0.0707	3.314E-05	-1.557	-0.00072981	-1.4863	-0.00069667	468.74260070966267	51.106	0.65297	51.106	50.795	51.448	0					35	21	2	0	0	0	0.53257	1	10628	10628		6.3541	0.59368	1	149700	+		11035	12276	7316	7368	15084	15084					0.0017970784447243204
LMCPFGLR	8	Unmodified	_LMCPFGLR_					0	0	0			REV__ENST00000514665.1_1_4:120141358-120141406:+|nuORF	REV__ENST00000514665.1_1_4:120141358-120141406:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.743334	935.472114	0.03513	1.6467E-05	-5.9433	-0.0027859	-5.9081	-0.0027694	468.742993481601	51.412	0.12645	51.482	51.405	51.531	0.069874	0.18783	-0.0040904	NaN	6.3541	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38992	+		11036	12276	7316	7368							0.0017970784447243204
LMDNIDTF	8	Unmodified	_LMDNIDTF_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.72210693359375	2	484.723318	967.432083	-0.069724	-3.3797E-05	-1.8917	-0.00091697	-1.9615	-0.00095077	484.7222515030476	71.84	1.2718	71.84	71.109	72.381	0					51	44	2	0	0	0	0.48651	1	16995	16995		14.582	0	1	87145			11037	1478	7317	7369	15085	15085					-0.05293560345126025
LMDNIDTF	8	Unmodified	_LMDNIDTF_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	484.723318	967.432083	-0.10892	-5.2796E-05	-2.327	-0.001128	-2.4359	-0.0011807	484.7220700139596	71.883	0.37193	71.939	71.867	72.239	0.055931	0.049384	-0.00021196	NaN	14.582	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95598			11038	1478	7317	7369							-0.05293560345126025
LMDREDTCH	9	Unmodified	_LMDREDTCH_					0	0	0		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7301635742188	2	560.231516	1118.44848	0.4597	0.00025754	-0.21944	-0.00012294	0.24026	0.0001346	560.2316524931592	95.916	0.81658	95.955	95.656	96.472	0.039772					84	41	3	0	0	0	0.25699	1	24125	24125		3.5965	3.5965	1	481280			11039	2568	7318	7370	15086	15086					-0.10600802450676383
LMDWLEDLS	9	Unmodified	_LMDWLEDLS_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.813232421875	2	561.262807	1120.51106	0.67867	0.00038091	-0.85571	-0.00048028	-0.17703	-9.9363E-05	561.2627937631679	83.882	0.54644	83.882	83.608	84.154	0					24	18	2	0	0	0	0.24263	1	20715	20715		12.532	2.3482	1	48575	+		11040	8276	7319	7371	15087	15087					-0.04437333110831787
LMECFRLF	8	Unmodified	_LMECFRLF_					0	0	0			REV__ENST00000464685.1_1_2:99785961-99787892:-|nuORF	REV__ENST00000464685.1_1_2:99785961-99787892:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7382202148438	2	529.761723	1057.50889	0.37666	0.00019954	-1.807	-0.00095726	-1.4303	-0.00075771	529.760855146065	47.761	0.57085	47.761	47.499	48.07	0					38	19	3	0	0	0	0.35759	1	9680	9680		11.64	4.3511	1	182180	+		11041	9802	7320	7372	15088	15088					-0.017560403296556615
LMEKCYHRP	9	Unmodified	_LMEKCYHRP_					0	0	0		ENST00000250076.7_2_17:5015492-5015627:-|nuORF	ENST00000250076.7_2_17:5015492-5015627:-|nuORF	ENST00000250076.7_2_17:5015492-5015627:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.785400390625	2	588.786261	1175.55797	0.53144	0.0003129	-0.12297	-7.2402E-05	0.40847	0.0002405	588.7862228745527	106.21	0.45078	106.24	106.11	106.56	0.029732					78	49	2	0	0	0	0.24021	3	27178	27178;27187;27261		13.906	3.7555	1	84903			11042	5833	7321	7373	15089;15090;15091	15089					-0.022787520406836848
LMEKERMIF	9	Unmodified	_LMEKERMIF_					0	0	0		ENST00000354752.5_1_9:99922575-99942308:-|nuORF	ENST00000354752.5_1_9:99922575-99942308:-|nuORF	ENST00000354752.5_1_9:99922575-99942308:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.31298828125	2	598.811944	1195.60934	0.13159	7.8799E-05	0.18492	0.00011073	0.31651	0.00018953	598.8121158685215	59.57	0.45359	59.643	59.427	59.88	0.072338					36	17	3	0	0	0	0.19398	1	13110	13110		19.257	0	1	394770			11043	6113	7322	7374	15092	15092					0.01935571933358915
LMEKIQRTW	9	Unmodified	_LMEKIQRTW_					0	0	0			REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.29931640625	2	602.828983	1203.64341	0.46959	0.00028308	-2.1895	-0.0013199	-1.7199	-0.0010368	602.827285666445	61.13	0.33491	61.204	61.053	61.388	0.073421					20	10	4	0	0	0	0.24683	1	13582	13582		11.495	0.6952	1	118860	+		11044	7885	7323	7375	15093	15093					0.049737364166276166
LMEKIQRTW	9	Unmodified	_LMEKIQRTW_					0	0	0			REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	602.828983	1203.64341	0.51683	0.00031156	-2.1393	-0.0012896	-1.6225	-0.00097807	602.8277462515023	61.239	0.27515	61.239	61.086	61.361	0	0.017578	4.4194E-05	NaN	11.495	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91277	+		11045	7885	7323	7375							0.049737364166276166
LMEMEMLSLF	10	Unmodified	_LMEMEMLSLF_					0	0	0		DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant	DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant	DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.7950439453125	2	622.292196	1242.56984	0.17361	0.00010804	2.3761	0.0014786	2.5497	0.0015867	622.2935856034612	75.585	0.96918	75.629	74.752	75.722	0.044037					59	35	3	0	0	0	0.28643	2	17855	17855;17953		24.021	4.7636	1	355820			11046	299	7324	7376	15094;15095	15094					-0.041743161323665845
LMEPSIWATE	10	Unmodified	_LMEPSIWATE_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7867431640625	2	588.783907	1175.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.09	1	106.09	105.59	106.59	0								0	0	0	0.33738	1	27347	27347		3.2813	0.54611	1		+		11047	13191	7325	7377	15096	15096					-0.027493577024642946
LMEPSIWATE	10	Unmodified	_LMEPSIWATE_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.787109375	2	588.783907	1175.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.44	1	106.44	105.94	106.94	0								0	0	0	0.33215	1	27446	27446		9.3831	1.2276	1		+		11048	13191	7325	7377	15097	15097					-0.027493577024642946
LMERQKRKA	9	Unmodified	_LMERQKRKA_					0	0	0		ENST00000486331.1_1_22:41716661-41728273:+|nuORF	ENST00000486331.1_1_22:41716661-41728273:+|nuORF	ENST00000486331.1_1_22:41716661-41728273:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3412475585938	2	580.340049	1158.66555	0.56154	0.00032588	0.84117	0.00048817	1.4027	0.00081405	580.3405274490175	103.38	0.31232	103.41	103.17	103.48	0.03791					75	32	3	0	0	0	0.26684	2	26404	26357;26404		10.824	6.7232	1	180270			11049	6786	7326	7378	15098;15099	15099					0.09255960885070635
LMEVTVMFK	9	Unmodified	_LMEVTVMFK_					0	0	0		ENST00000268182.9_1_15:91043867-91044059:+|nuORF	ENST00000268182.9_1_15:91043867-91044059:+|nuORF	ENST00000268182.9_1_15:91043867-91044059:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.29052734375	2	549.290314	1096.56607	-0.11534	-6.3358E-05	0.6183	0.00033963	0.50295	0.00027627	549.2905908062284	26.212	0.34719	26.212	26.054	26.401	0					51	29	2	0	0	0	0.33849	1	3188	3188		1.6526	0.17072	1	29836			11050	5908	7327	7379	15100	15100					0.021653821560903452
LMFATGLFRPF	11	Unmodified	_LMFATGLFRPF_					0	0	0			REV__ENSG00000197406|ENST00000510508|DIO3	REV__ENSG00000197406|ENST00000510508|DIO3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.2334899902344	3	433.902126	1298.68455	0.54795	0.00023776	-0.72468	-0.00031444	-0.17673	-7.6681E-05	433.9013169625093	67.495	0.13389	67.56	67.502	67.636	0.065071					7	4	2	0	0	0	0.31089	1	15507	15507		2.6312	0.19645	1	50533	+		11051	10856	7328	7380	15101	15101					0.04715497456095363
LMFHFDEW	8	Unmodified	_LMFHFDEW_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7954711914062	2	562.747127	1123.4797	-0.16109	-9.0651E-05	-3.2374	-0.0018218	-3.3985	-0.0019125	562.7451646309913	40.258	0.27	40.258	40.071	40.341	0					12	9	2	0	0	0	0.3576	1	7354	7354		0.79363	0.10326	1	15689	+		11052	9291	7329	7381	15102	15102					-0.07709861354283021
LMGIWCYTF	9	Unmodified	_LMGIWCYTF_					0	0	0		nc|ENSG00000176623|Q96DB5-3|RMDN1;nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1	nc|ENSG00000176623|Q96DB5-3|RMDN1	nc|ENSG00000176623|Q96DB5-3|RMDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2605590820312	2	567.261556	1132.50856	-0.06658	-3.7768E-05	-1.9353	-0.0010978	-2.0019	-0.0011356	567.2606140002551	72.26	0.69028	72.26	71.972	72.662	0					48	23	3	0	0	0	0.11022	1	17121	17121		30.225	2.596	1	142780			11053	4669	7330	7382	15103	15103					-0.05239460049506306
LMGIWCYTF	9	Unmodified	_LMGIWCYTF_					0	0	0		nc|ENSG00000176623|Q96DB5-3|RMDN1;nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1	nc|ENSG00000176623|Q96DB5-3|RMDN1	nc|ENSG00000176623|Q96DB5-3|RMDN1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	567.261556	1132.50856	-0.06658	-3.7768E-05	-1.9353	-0.0010978	-2.0019	-0.0011356	567.2606140002551	72.26	0.69028	72.26	71.972	72.662	0	-0.027559	0.00013916	NaN	30.225	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142780			11054	4669	7330	7382							-0.05239460049506306
LMHFAWCL	8	Unmodified	_LMHFAWCL_					0	0	0			REV__ENSG00000196131|ENST00000341702|VN1R2	REV__ENSG00000196131|ENST00000341702|VN1R2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.24273681640625	2	510.743334	1019.47211	0.27038	0.0001381	2.1577	0.0011021	2.4281	0.0012401	510.74475111026334	37.561	0.28203	37.561	37.393	37.675	0					14	9	3	0	0	0	0.3576	1	6543	6543		0.79363	0	1	46403	+		11055	10801	7331	7383	15104	15104					-0.03684292155548974
LMIDFGFLE	9	Unmodified	_LMIDFGFLE_					0	0	0			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.77001953125	2	542.772811	1083.53107	0.60102	0.00032622	-4.3638	-0.0023685	-3.7628	-0.0020423	542.7698233290891	93.042	0.92601	93.079	92.748	93.674	0.037369					77	38	3	0	0	0	0.17247	1	23272	23272		21.747	1.293	1	386100	+		11056	9223	7332	7384	15105	15105					-0.007355373802283793
LMIEASAPNL	10	Unmodified	_LMIEASAPNL_					0	0	0			REV__ENST00000466803.1_1_1:60330814-60338634:+|nuORF	REV__ENST00000466803.1_1_1:60330814-60338634:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7805786132812	2	529.781167	1057.54778	0.29091	0.00015412	-1.4886	-0.00078864	-1.1977	-0.00063453	529.7804819881143	94.862	0.5014	94.901	94.692	95.193	0.038788					49	20	3	0	0	0	0.24525	1	23831	23831		28.495	3.0952	1	463490	+		11057	9184	7333	7385	15106	15106					0.021309635057150444
LMIKLNGPVF	10	Unmodified	_LMIKLNGPVF_					0	0	0			REV__ENST00000225296.7_1_17:5347294-5347528:-|nuORF	REV__ENST00000225296.7_1_17:5347294-5347528:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7645874023438	2	566.33337	1130.65219	0.6721	0.00038063	-1.9389	-0.001098	-1.2667	-0.0007174	566.3321016287333	84.779	0.84044	84.779	84.595	85.435	0					41	33	2	0	0	0	0.29236	1	21057	21057		16.942	6.8684	1	125950	+		11058	11184	7334	7386	15107	15107					0.09208710053121649
LMIPTELQL	9	Unmodified	_LMIPTELQL_					0	0	0			REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.302490234375	2	529.301736	1056.58892	0.65839	0.00034849	-0.0017472	-9.2477E-07	0.65665	0.00034756	529.3019449661653	85.197	1.0235	85.22	84.77	85.794	0.023125					65	41	2	0	0	0	0.27332	1	20867	20867		10.074	10.074	1	159940	+		11059	13209	7335	7387	15108	15108					0.06288724545220248
LMIPTELQL	9	Unmodified	_LMIPTELQL_					0	0	0			REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	529.301736	1056.58892	0.65839	0.00034849	-0.0017472	-9.2477E-07	0.65665	0.00034756	529.3019449661653	85.197	1.0235	85.22	84.77	85.794	0.023125	0.023103	2.7685E-06	NaN	10.074	65	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159940	+		11060	13209	7335	7387							0.06288724545220248
LMIPTIDPTF	10	Unmodified	_LMIPTIDPTF_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2308959960938	2	574.307018	1146.59948	0.41151	0.00023633	-2.1233	-0.0012194	-1.7118	-0.00098307	574.3056524332311	83.088	0.41359	83.088	82.928	83.341	0					17	13	2	0	0	0	0.31731	1	20363	20363		6.2058	1.8765	1	75166	+		11061	8167	7336	7388	15109	15109					0.03204707199620316
LMIYRFCL	8	Unmodified	_LMIYRFCL_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7808837890625	2	529.779916	1057.54528	0.33019	0.00017493	0.99187	0.00052547	1.3221	0.0007004	529.7804937390803	94.969	0.53842	94.969	94.656	95.194	0					52	21	3	0	0	0	0.41225	4	23976	23976;23993;24032;24046		24.674	24.674	1	607240			11062	7408	7337	7389	15110;15111;15112;15113	15110					0.018808365670793137
LMIYRFCL	8	Unmodified	_LMIYRFCL_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7800903320312	2	529.779916	1057.54528	0.29091	0.00015412	0.87313	0.00046257	1.164	0.00061669	529.7804819881143	94.862	0.5014	94.901	94.692	95.193	0.038788					49	20	3	0	0	0	0.41225	2	23792	23792;23881		24.674	5.4169	1	463490			11063	7408	7337	7389	15114;15115	15114					0.018808365670793137
LMKPLLVF	8	Unmodified	_LMKPLLVF_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000157680|ENST00000614521|DGKI;nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.8009033203125	2	480.801174	959.587796	-0.067597	-3.2501E-05	0.17068	8.2063E-05	0.10308	4.9562E-05	480.80114718131705	90.026	0.9816	90.026	89.646	90.628	0					96	39	4	0	0	0	0.53817	3	22437	22437;22482;22535		2.5775	2.5775	1	1713100			11064	3383	7338	7390	15116;15117;15118	15116					0.10638554966976699
LMKPLLVF	8	Unmodified	_LMKPLLVF_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000157680|ENST00000614521|DGKI;nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.80084228515625	2	480.801174	959.587796	-0.16353	-7.8626E-05	0.1486	7.1447E-05	-0.014932	-7.1795E-06	480.8011117999219	89.898	0.90002	89.932	89.631	90.531	0.034058					84	36	4	0	0	0	0.53817	2	22369	22369;22418		2.5775	0	1	2005000			11065	3383	7338	7390	15119;15120	15119					0.10638554966976699
LMKPTFVC	8	Unmodified	_LMKPTFVC_					0	0	0			REV__OR8B4|p.G252Wfs*34|1|0.78|ENSG00000280090|chr11:124424118-124424119|-/A|frameshift_variant	REV__OR8B4|p.G252Wfs*34|1|0.78|ENSG00000280090|chr11:124424118-124424119|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.746826171875	2	469.745542	937.476531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.171	1	80.195	79.695	80.695	0.023605								0	0	0	0.38822	1	19356	19356		8.5933	0.68312	1		+		11066	11151	7339	7391	15121	15121					0.005291722673632648
LMKRVTGCIL	10	Unmodified	_LMKRVTGCIL_					0	0	0		ENST00000473046.1_1_1:183252983-183259825:-|nuORF;nc|ENSG00000157064|Q9BZQ4-2|NMNAT2;ENSG00000157064|ENST00000287713|NMNAT2	ENST00000473046.1_1_1:183252983-183259825:-|nuORF	ENST00000473046.1_1_1:183252983-183259825:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3333129882812	2	567.330304	1132.64606	0.29401	0.0001668	-0.11125	-6.3115E-05	0.18276	0.00010368	567.3302062765836	88.75	0.56789	88.75	88.486	89.053	0					62	23	3	0	0	0	0.45443	1	22095	22095		3.9444	0	1	280580			11067	3645	7340	7392	15122	15122					0.08503868549951221
LMKRWSYE	8	Unmodified	_LMKRWSYE_					0	0	0			REV__ENST00000475235.1_1_6:32780995-32781623:-|nuORF	REV__ENST00000475235.1_1_6:32780995-32781623:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.759033203125	2	556.781502	1111.54845	0.55809	0.00031073	-3.3413	-0.0018604	-2.7832	-0.0015496	556.7813623773726	57.82	0.88799	57.82	57.329	58.217	0					66	31	3	0	0	0	0.34292	1	12761	12761		24.674	1.5255	1	110930	+		11068	11058	7341	7393	15123	15123					-0.0028619705458368117
LMKTLGTLLM	10	Unmodified	_LMKTLGTLLM_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8267211914062	2	560.827063	1119.63957	-0.25255	-0.00014164	-0.11852	-6.6467E-05	-0.37107	-0.0002081	560.8269475645876	41.4	1.0028	41.49	41.241	42.243	0.089764					125	39	5	0	0	0	0.25276	1	7549	7549		27.629	4.8925	1	2107800			11069	7682	7342	7394	15124	15124					0.08453930598557235
LMKTLGTLLM	10	Unmodified	_LMKTLGTLLM_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	560.827063	1119.63957	-0.468	-0.00026247	-0.20519	-0.00011507	-0.67319	-0.00037754	560.8269416225897	41.472	2.8385	41.472	41.225	44.063	0	-0.0090665	-5.4392E-05	NaN	27.629	182	100	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2270800			11070	7682	7342	7394							0.08453930598557235
LMLCWLSF	8	Unmodified	_LMLCWLSF_					0	0	0			REV__nc|ENSG00000138346|P51530-2|DNA2	REV__nc|ENSG00000138346|P51530-2|DNA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7528991699219	2	506.753367	1011.49218	0.25801	0.00013075	-0.66423	-0.0003366	-0.40622	-0.00020586	506.7529027015443	91.658	1.4516	91.693	91.384	92.835	0.035446					125	51	5	0	0	0	0.44023	2	22967	22967;23023		20.871	3.2367	1	2147500	+		11071	9310	7343	7395	15125;15126	15125					-0.013105412155823615
LMLFGHPLL	9	Unmodified	_LMLFGHPLL_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2688598632812	2	520.801706	1039.58886	-0.1715	-8.9316E-05	-4.2193	-0.0021974	-4.3908	-0.0022867	520.7995824140922	43.079	0.39119	43.079	42.999	43.39	0					18	12	2	0	0	0	0.25416	1	8278	8278		5.2307	0.90143	1	30982			11072	1304	7344	7396	15127	15127					0.07064769335875098
LMLFWFFI	8	Unmodified	_LMLFWFFI_					0	0	0			REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8018798828125	2	558.801174	1115.5878	0.071735	4.0085E-05	2.4239	0.0013545	2.4956	0.0013945	558.8025488063897	106.82	0.12651	106.82	106.72	106.85	0					18	11	2	0	0	0	0.46808	1	27546	27546		17.087	0.14425	1	116260	+		11073	13288	7345	7397	15128	15128					0.03462554966972675
LMLFWFFI	8	Unmodified	_LMLFWFFI_					0	0	0			REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8018188476562	2	558.801174	1115.5878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.08	1	107.08	106.58	107.58	0								0	0	0	0.38643	1	27629	27629		17.087	3.5787	1		+		11074	13288	7345	7397	15129	15129					0.03462554966972675
LMLFWFFI	8	Unmodified	_LMLFWFFI_					0	0	0			REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8031005859375	2	558.801174	1115.5878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.28	1	107.28	106.78	107.78	0								0	0	0	0.38643	1	27683	27683		17.087	3.5787	1		+		11075	13288	7345	7397	15130	15130					0.03462554966972675
LMLFWFFI	8	Unmodified	_LMLFWFFI_					0	0	0			REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.802978515625	2	558.801174	1115.5878	0.4599	0.00025699	1.9913	0.0011127	2.4512	0.0013697	558.8021127969497	106.72	0.15762	106.74	106.62	106.78	0.025711					21	14	2	0	0	0	0.46808	1	27312	27312		17.087	5.4463	1	83121	+		11076	13288	7345	7397	15131	15131					0.03462554966972675
LMLFWFFI	8	Unmodified	_LMLFWFFI_					0	0	0			REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8024291992188	2	558.801174	1115.5878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.09	1	107.11	106.61	107.61	0.025711								0	0	0	0.38643	1	27431	27431		17.087	5.4463	1		+		11077	13288	7345	7397	15132	15132					0.03462554966972675
LMLFWFFI	8	Unmodified	_LMLFWFFI_					0	0	0			REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8025512695312	2	558.801174	1115.5878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.26	1	107.29	106.79	107.79	0.025711								0	0	0	0.38643	1	27477	27477		17.087	3.5787	1		+		11078	13288	7345	7397	15133	15133					0.03462554966972675
LMLFWFFI	8	Unmodified	_LMLFWFFI_					0	0	0			REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8026733398438	2	558.801174	1115.5878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.4	1	107.42	106.92	107.92	0.025711								0	0	0	0.38822	1	27514	27514		6.3541	1.1234	1		+		11079	13288	7345	7397	15134	15134					0.03462554966972675
LMLMECSIC	9	Unmodified	_LMLMECSIC_					0	0	0		ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	ENST00000538503.5_1_12:121882954-121987523:-|nuORF	ENST00000538503.5_1_12:121882954-121987523:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7725830078125	2	521.725635	1041.43672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.14	1	44.229	43.729	44.729	0.088924								0	0	0	0.2699	1	8415	8415		5.2307	0	1				11080	1027	7346	7398	15135	15135					-0.08234458789843302
LMLMRNEF	8	Unmodified	_LMLMRNEF_					0	0	0			REV__nc|ENSG00000118922|Q9Y4X4-2|KLF12	REV__nc|ENSG00000118922|Q9Y4X4-2|KLF12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7164306640625	2	527.26463	1052.51471	-0.00075926	-4.0033E-07	2.3558	0.0012421	2.355	0.0012417	527.2660160326919	58.396	0.45158	58.396	58.256	58.708	0					25	16	2	0	0	0	0.35759	1	12839	12839		14.838	3.7238	1	51311	+		11081	8847	7347	7399	15136	15136					-0.009449418179656277
LMLQGVDLL	9	Unmodified	_LMLQGVDLL_					0	0	0		HSPD1|p.R37Q|1|0.17|ENSG00000144381|chr2:197498739-197498739|C/T|missense_variant;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1	HSPD1|p.R37Q|1|0.17|ENSG00000144381|chr2:197498739-197498739|C/T|missense_variant	HSPD1|p.R37Q|1|0.17|ENSG00000144381|chr2:197498739-197498739|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2880859375	2	501.288628	1000.5627	0.28404	0.00014239	3.2792	0.0016438	3.5632	0.0017862	501.290320877473	83.255	0.71001	83.277	82.931	83.641	0.021744					53	24	3	0	0	0	0.10833	1	20269	20269		30.637	6.616	1	233480			11082	3205	7348	7400	15137	15137					0.06244455373735036
LMNVFIQP	8	Unmodified	_LMNVFIQP_					0	0	0			REV__ARMC8|p.K242N|1|0.17|ENSG00000114098|chr3:138237522-138237522|G/T|missense_variant	REV__ARMC8|p.K242N|1|0.17|ENSG00000114098|chr3:138237522-138237522|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7769775390625	2	481.262413	960.510274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.503	1	66.568	66.068	67.068	0.065071								0	0	0	0.38822	1	15196	15196		5.2307	2.3415	1		+		11083	7720	7349	7401	15138	15138					0.02843917030781995
LMNYLRMV	8	Unmodified	_LMNYLRMV_					0	0	0		GRIK5|p.D356H|1|0.48|ENSG00000105737|chr19:42053920-42053920|C/G|missense_variant;GRIK4|p.D470Mfs*20|1|0.47|ENSG00000149403|chr11:120905422-120905422|G/-|frameshift_variant;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5	GRIK5|p.D356H|1|0.48|ENSG00000105737|chr19:42053920-42053920|C/G|missense_variant	GRIK5|p.D356H|1|0.48|ENSG00000105737|chr19:42053920-42053920|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3236083984375	2	520.274998	1038.53544	0.37509	0.00019515	1.4512	0.00075503	1.8263	0.00095018	520.2754417812586	76.22	0.41257	76.22	76.081	76.494	0					22	18	2	0	0	0	0.35042	1	18271	18271		19.439	6.9074	1	905610			11084	1487	7350	7402	15139	15139					0.01771648561702932
LMPFAYIIF	9	Unmodified	_LMPFAYIIF_					0	0	0			REV__ENSG00000182858|ENST00000330817|ALG12	REV__ENSG00000182858|ENST00000330817|ALG12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2981567382812	2	557.803914	1113.59328	0.79374	0.00044275	3.5236	0.0019655	4.3174	0.0024083	557.8051968241556	70.612	0.27073	70.672	70.507	70.777	0.060562					16	11	2	0	0	0	0.237	1	16398	16398		14.582	0	1	83680	+		11085	10579	7351	7403	15140	15140					0.04102233758771945
LMQKGQQML	9	Unmodified	_LMQKGQQML_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.3246459960938	2	538.783187	1075.55182	0.57386	0.00030919	2.6684	0.0014377	3.2423	0.0017469	538.7845322760796	69.92	0.33921	69.92	69.704	70.043	0					19	11	2	0	0	0	0.25644	1	16326	16326		3.9444	0	1	86981			11086	3480	7352	7404	15141	15141					0.01706729727811762
LMREQSESL	9	Unmodified	_LMREQSESL_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7685546875	2	546.771331	1091.52811	-0.57715	-0.00031557	-3.42	-0.00187	-3.9972	-0.0021855	546.7693405505926	41.791	0.40685	41.791	41.65	42.057	0					30	13	3	0	0	0	0.22083	2	7837	7837;7901		16.149	0.90062	1	82419			11087	5566	7353	7405	15142;15143	15142					-0.013994125050203365
LMRYFTTL	8	Unmodified	_LMRYFTTL_					0	0	0			REV__ENST00000478558.1_1_1:153631938-153633685:+|nuORF	REV__ENST00000478558.1_1_1:153631938-153633685:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7721557617188	2	522.78097	1043.54739	0.4455	0.0002329	2.8714	0.0015011	3.3169	0.001734	522.7820615669326	57.482	0.43851	57.482	57.241	57.679	0					21	15	2	0	0	0	0.33807	1	12574	12574		28.487	3.813	1	73670	+		11088	12068	7354	7406	15144	15144					0.027355885765246057
LMRYFTTL	8	Unmodified	_LMRYFTTL_					0	0	0			REV__ENST00000478558.1_1_1:153631938-153633685:+|nuORF	REV__ENST00000478558.1_1_1:153631938-153633685:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	522.78097	1043.54739	0.30272	0.00015826	3.368	0.0017607	3.6708	0.001919	522.7823743701855	57.376	0.31884	57.444	57.32	57.639	0.068375	-0.01924	0.00019393	NaN	28.487	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73313	+		11089	12068	7354	7406							0.027355885765246057
LMSEDCLPAL	10	Unmodified	_LMSEDCLPAL_					0	0	0			REV__ENST00000511744.1_1_6:53976250-54068425:+|nuORF	REV__ENST00000511744.1_1_6:53976250-54068425:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2451782226562	2	546.25921	1090.50387	0.28427	0.00015528	-0.41196	-0.00022504	-0.12769	-6.9751E-05	546.2587847312642	37.34	0.24864	37.34	37.194	37.442	0					10	8	2	0	0	0	0.43672	1	6473	6473		7.2892	0.93513	1	18195	+		11090	12257	7355	7407	15145	15145					-0.037763889829420805
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(190)SLIINTF	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2942504882812	2	534.293911	1066.57327	0.87409	0.00046702	0.0040333	2.155E-06	0.87812	0.00046917	534.2938080461299	80.799	1.1155	80.799	80.485	81.601	0					124	38	4	0	0	0	4.0719E-13	4	19726	19676;19726;19772;19821		189.78	120.89	1	3266200			11091	1108;897	7356	7408	15146;15147;15148;15149	15147		50			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(220)SLIINTF	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2942504882812	2	534.293911	1066.57327	0.5474	0.00029247	-0.0015559	-8.3132E-07	0.54584	0.00029164	534.2939589475938	82.686	2.8148	82.686	81.461	84.276	0					284	98	5	0	0	0	4.8315E-24	10	20268	20180;20224;20268;20319;20369;20415;20458;20510;20559;20612		223.81	148.88	1	6264700			11092	1108;897	7356	7408	15150;15151;15152;15153;15154;15155;15156;15157;15158;15159	15152		50			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(52)SLIINTF	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2944946289062	2	534.293911	1066.57327	0.81278	0.00043427	0.28442	0.00015196	1.0972	0.00058623	534.2940161719641	84.511	0.88754	84.511	84.423	85.311	0					60	40	2	0	0	0	0.029291	1	20832	20832		51.63	32.373	1	446240			11093	1108;897	7356	7408	15160	15160		50			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(93)SLIINTF	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2938232421875	2	534.293911	1066.57327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.336	1	84.336	83.836	84.836	0								0	0	0	6.1411E-05	1	20782	20782		92.653	30.081	1				11094	1108;897	7356	7408	15161	15161		50			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(170)SLIINTF	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2943115234375	2	534.293911	1066.57327	0.83224	0.00044466	0.079056	4.2239E-05	0.9113	0.0004869	534.2938689229179	80.9	1.3026	80.923	80.436	81.739	0.023605					121	46	4	0	0	0	1.2541E-09	4	19550	19507;19550;19597;19646		174.73	112.15	1	3674500			11095	1108;897	7356	7408	15162;15163;15164;15165	15163		50			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(210)SLIINTF	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2942504882812	2	534.293911	1066.57327	0.51844	0.000277	0.072102	3.8524E-05	0.59054	0.00031552	534.2939963380442	82.641	2.8391	82.663	81.503	84.342	0.021751					309	103	5	0	0	0	9.2424E-18	12	20115	19985;20029;20073;20115;20159;20201;20246;20291;20341;20387;20436;20485		206.75	130.99	1	5965300			11096	1108;897	7356	7408	15166;15167;15168;15169;15170;15171;15172;15173;15174;15175;15176;15177	15169		50			0.04264438028144468
LMSLIINTF	9	Unmodified	_LMSLIINTF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2967529296875	2	526.296453	1050.57835	0.26964	0.00014191	0.4883	0.00025699	0.75794	0.0003989	526.29665801971	90.613	0.82468	90.613	90.327	91.152	0					82	29	4	0	0	0	5.7754E-06	3	22717	22717;22764;22822		152.89	60.395	1	1786200			11097	1108;897	7356	7409	15178;15179;15180	15178					0.055087418907760366
LMSLIINTF	9	Unmodified	_LMSLIINTF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	526.296453	1050.57835	-0.084743	-4.46E-05	0.93975	0.00049458	0.855	0.00044998	526.2968490701187	90.559	0.86601	90.593	90.329	91.195	0.034065	-0.01014	0.00016245	NaN	152.89	83	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2519100			11098	1108;897	7356	7409							0.055087418907760366
LMTTMSEFFD	10	Unmodified	_LMTTMSEFFD_					0	0	0		nc|ENSG00000166436|O15016-3|TRIM66;ENST00000481014.6_1_11:8646046-8673385:-|nuORF	nc|ENSG00000166436|O15016-3|TRIM66	nc|ENSG00000166436|O15016-3|TRIM66	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.2608642578125	2	611.26195	1220.50935	0.13183	8.058E-05	-1.2014	-0.00073435	-1.0695	-0.00065377	611.2600180470754	73.973	1.1937	73.973	73.716	74.91	0					74	43	3	0	0	0	0.35104	1	17631	17631		17.113	4.8722	1	441000			11099	6747	7357	7410	15181	15181					-0.09208710191091996
LMTTMSEFFD	10	Unmodified	_LMTTMSEFFD_					0	0	0		nc|ENSG00000166436|O15016-3|TRIM66;ENST00000481014.6_1_11:8646046-8673385:-|nuORF	nc|ENSG00000166436|O15016-3|TRIM66	nc|ENSG00000166436|O15016-3|TRIM66	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.2591552734375	2	611.26195	1220.50935	0.41906	0.00025616	-3.5362	-0.0021616	-3.1172	-0.0019054	611.2597769156621	73.936	0.53875	73.985	73.804	74.342	0.048546					33	19	2	0	0	0	0.29844	2	17490	17441;17490		22.736	6.8891	1	328440			11100	6747	7357	7410	15182;15183	15183					-0.09208710191091996
LMVCLVHL	8	Unmodified	_LMVCLVHL_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.2605895996094	2	464.261359	926.508165	-0.35617	-0.00016536	-1.1864	-0.00055081	-1.5426	-0.00071617	464.2606903291158	41.07	0.49888	41.07	40.759	41.258	0					32	17	2	0	0	0	0.53771	1	7655	7655		2.8892	0	1	105690			11101	2058	7358	7411	15184	15184					0.04197165021298588
LMVDHENFI	9	Unmodified	_LMVDHENFI_					0	0	0		nc|ENSG00000140284|O14975-2|SLC27A2;ENSG00000140284|ENST00000267842|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.26025390625	2	559.270967	1116.52738	0.4495	0.00025139	1.8784	0.0010506	2.328	0.001302	559.2718376051786	53.564	0.9295	53.564	53.113	54.042	0					78	36	3	0	0	0	0.16036	1	11472	11472		23.148	3.8914	1	398420			11102	3001	7359	7412	15185	15185					-0.026222071540814795
LMVESRQLVF	10	Unmodified	_LMVESRQLVF_					0	0	0			REV__ENSG00000075420|ENST00000415807|FNDC3B	REV__ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.22772216796875	3	407.893519	1220.65873	0.20784	8.4777E-05	-1.1955	-0.00048763	-0.98764	-0.00040285	407.89292652182183	74.725	0.61024	74.773	74.45	75.061	0.048546					72	21	4	0	0	0	0.46426	1	17729	17729		2.086	0	1	880070	+		11103	8196	7360	7413	15186	15186					0.05722603213803268
LMVTMDCFFPR	11	Unmodified	_LMVTMDCFFPR_					0	0	0			REV__ENSG00000180042|ENST00000572493|OR1R1P	REV__ENSG00000180042|ENST00000572493|OR1R1P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.8799133300781	3	453.880117	1358.61852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.263	1	45.35	44.85	45.85	0.08754								0	0	0	0.33867	1	8754	8754		1.2148	0	1		+		11104	10496	7361	7414	15187	15187					-0.046444027726238346
LMWPFWCC	8	Unmodified	_LMWPFWCC_					0	0	0			REV__ENSG00000105270|ENST00000360535|CLIP3	REV__ENSG00000105270|ENST00000360535|CLIP3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2555541992188	2	543.223919	1084.43329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.202	1	19.202	18.702	19.702	0								0	0	0	0.38822	1	1302	1302		0	0	1		+		11105	8532	7362	7415	15188	15188					-0.10555340781547784
LMYLIELVL	9	Unmodified	_LMYLIELVL_					0	0	0			REV__ENST00000506256.5_1_6:97707503-97720651:-|nuORF	REV__ENST00000506256.5_1_6:97707503-97720651:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8299560546875	2	553.830129	1105.6457	0.51383	0.00028457	-0.51172	-0.0002834	0.0021087	1.1679E-06	553.8297367290927	82.746	1.4807	82.767	82.161	83.641	0.021751					147	52	4	0	0	0	0.33356	1	19994	19994		2.3027	0	1	814830	+		11106	9537	7363	7416	15189	15189					0.09710772101720977
LMYQSFRRLF	10	Unmodified	_LMYQSFRRLF_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2453918457031	3	454.244664	1359.71216	0.31389	0.00014258	1.5265	0.00069341	1.8404	0.00083599	454.2452609453866	49.921	0.66727	49.921	49.653	50.32	0					57	23	4	0	0	0	0.39723	1	10294	10294		12.175	3.423	1	148190	+		11107	10869	7364	7417	15190	15190					0.046694007163523565
LMYQSFRRLF	10	Unmodified	_LMYQSFRRLF_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.24591064453125	3	454.244664	1359.71216	0.13153	5.9745E-05	1.8071	0.00082087	1.9386	0.00088062	454.24536937778674	49.875	0.38524	49.948	49.766	50.152	0.07312					31	13	3	0	0	0	0.35616	1	10140	10140		16.566	7.8141	1	117620	+		11108	10869	7364	7417	15191	15191					0.046694007163523565
LMYQSFRRLF	10	Unmodified	_LMYQSFRRLF_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	454.244664	1359.71216	0.31389	0.00014258	1.5265	0.00069341	1.8404	0.00083599	454.2452609453866	49.921	0.66727	49.921	49.653	50.32	0	-0.013341	-0.00016536	NaN	16.566	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148190	+		11109	10869	7364	7417							0.046694007163523565
LMYQSFRRLF	10	Unmodified	_LMYQSFRRLF_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	454.244664	1359.71216	0.13153	5.9745E-05	1.8071	0.00082087	1.9386	0.00088062	454.24536937778674	49.875	0.38524	49.948	49.766	50.152	0.07312	0.013341	0.00021702	NaN	16.566	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117620	+		11110	10869	7364	7417							0.046694007163523565
LMYTDKLASRD	11	Unmodified	_LMYTDKLASRD_					0	0	0			REV__nc|ENSG00000169299|Q96G03-2|PGM2	REV__nc|ENSG00000169299|Q96G03-2|PGM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.7442626953125	3	438.223705	1311.64929	-0.11006	-4.823E-05	-2.9923	-0.0013113	-3.1024	-0.0013595	438.2221657633365	44.524	0.25483	44.611	44.479	44.734	0.08754					12	8	3	0	0	0	0.31089	1	8546	8546		2.6312	0.54523	1	29651	+		11111	10168	7365	7418	15192	15192					0.005927901376026057
LMYVNLDNE	9	Unmodified	_LMYVNLDNE_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7600708007812	2	555.760432	1109.50631	0.47623	0.00026467	-1.2451	-0.00069199	-0.7689	-0.00042732	555.759783190525	77.193	0.65884	77.193	76.73	77.389	0					57	28	3	0	0	0	0.098463	2	18630	18571;18630		32.786	7.3864	1	664090			11112	3934	7366	7419	15193;15194	15194					-0.04406217253608702
LNAVAFVYTN	10	Unmodified	_LNAVAFVYTN_					0	0	0		tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.8159790039062	2	556.292756	1110.57096	0.34521	0.00019204	0.5749	0.00031981	0.92011	0.00051185	556.2932096062248	48.709	0.81203	48.709	48.192	49.004	0					44	27	3	0	0	0	0.31565	1	9975	9975		12.241	1.4167	1	191310			11113	13670	7367	7420	15195	15195					0.02009725614720992
LNDSGGPPSL	10	Unmodified	_LNDSGGPPSL_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.73748779296875	2	478.737814	955.461075	-0.44559	-0.00021332	0.39528	0.00018923	-0.050313	-2.4087E-05	478.7378712288312	40.62	0.435	40.709	40.518	40.953	0.089645					37	16	3	0	0	0	0.43214	1	7387	7387		8.1555	0.54658	1	158610	+		11114	9630	7368	7421	15196	15196					-0.018436997244748454
LNEKRVFQMC	10	Unmodified	_LNEKRVFQMC_					0	0	0			REV__ENST00000459976.2_1_3:49002373-49005591:+|nuORF	REV__ENST00000459976.2_1_3:49002373-49005591:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3173217773438	2	634.317925	1266.6213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.419	1	30.494	29.994	30.994	0.075403								0	0	0	0.33952	1	4299	4299		0	0	1		+		11115	10429	7369	7422	15197	15197					-0.0013481132343713398
LNFLEPVNNI	10	Unmodified	_LNFLEPVNNI_					0	0	0		ENST00000548585.2_1_9:94518314-94538029:-|nuORF;ENSG00000169071|ENST00000375708|ROR2	ENST00000548585.2_1_9:94518314-94538029:-|nuORF	ENST00000548585.2_1_9:94518314-94538029:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.834228515625	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.398	1	87.426	86.926	87.926	0.027573								0	0	0	0.33411	1	21555	21555		7.1017	0.89594	1				11116	4324	7370	7423	15198	15198					0.044776836775326956
LNGETVEII	9	Unmodified	_LNGETVEII_					0	0	0		tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2728271484375	2	494.27149	986.528426	0.65425	0.00032338	0.0026827	1.326E-06	0.65693	0.0003247	494.2715947573694	70.285	0.38849	70.285	70.142	70.531	0					22	14	2	0	0	0	0.10543	1	16516	16516		31.268	2.1868	1	154960			11117	13508	7371	7424	15199	15199					0.03462330486490828
LNHLVPDIAW	10	Unmodified	_LNHLVPDIAW_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3189086914062	2	589.321848	1176.62914	0.47661	0.00028088	-2.8689	-0.0016907	-2.3923	-0.0014098	589.3200474134846	76.286	1.2834	76.286	75.948	77.231	0					127	57	4	0	0	0	0.40359	1	18523	18523		11.495	0.67078	1	4230700	+		11118	10469	7372	7425	15200	15200					0.04789407259977452
LNHLVPDIAW	10	Unmodified	_LNHLVPDIAW_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3193359375	2	589.321848	1176.62914	0.56531	0.00033315	-2.6895	-0.001585	-2.1242	-0.0012518	589.3201307786073	76.261	1.2404	76.3	76.016	77.256	0.03923					130	52	4	0	0	0	0.30966	3	18299	18256;18299;18348		21.537	2.2431	1	4517500	+		11119	10469	7372	7425	15201;15202;15203	15202					0.04789407259977452
LNIDTALFVI	10	Unmodified	_LNIDTALFVI_					0	0	0			REV__nc|ENSG00000196470|Q8IUQ4-3|SIAH1	REV__nc|ENSG00000196470|Q8IUQ4-3|SIAH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8271484375	2	559.826432	1117.63831	0.33766	0.00018903	-0.19381	-0.0001085	0.14385	8.053E-05	559.8263410586859	102.58	0.68474	102.58	102.36	103.04	0					128	46	4	0	0	0	0.44246	1	26445	26445		6.2058	0.9089	1	2022200	+		11120	10541	7373	7426	15204	15204					0.08419755825661923
LNISNITDP	9	Unmodified	_LNISNITDP_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7610168457031	2	493.761289	985.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.951	1	25.047	24.547	25.547	0.096073								0	0	0	0.27782	1	2707	2707		3.5965	0	1		+		11121	10374	7374	7427	15205	15205					0.014691598266608707
LNKCGPMVL	9	Unmodified	_LNKCGPMVL_					0	0	0		ENST00000466613.2_1_1:17359444-17380514:-|nuORF;ENST00000475506.1_1_1:17354162-17371284:-|nuORF;ENSG00000117118|ENST00000375499|SDHB	ENST00000466613.2_1_1:17359444-17380514:-|nuORF	ENST00000466613.2_1_1:17359444-17380514:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7610778808594	2	487.761723	973.508894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.926	1	55.926	55.426	56.426	0								0	0	0	0.27427	1	12119	12119		4.3292	0	1				11122	1988	7375	7428	15206	15206					0.02107959670377113
LNKGQDPLA	9	Unmodified	_LNKGQDPLA_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2640075683594	2	478.263999	954.513445	-0.035657	-1.7053E-05	-0.088493	-4.2323E-05	-0.12415	-5.9377E-05	478.26387287932926	36.842	1.3223	36.842	36.46	37.783	0					128	49	4	0	0	0	0.2125	1	6426	6426		17.113	0.96379	1	954980			11123	446	7376	7429	15207	15207					0.03436883409119673
LNKNFSLDQV	10	Unmodified	_LNKNFSLDQV_					0	0	0			REV__ENST00000563726.5_1_19:11522073-11527633:-|nuORF	REV__ENST00000563726.5_1_19:11522073-11527633:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.312255859375	2	589.31422	1176.61389	0.18777	0.00011065	-3.2398	-0.0019093	-3.052	-0.0017986	589.3122227378192	105.44	0.20526	105.44	105.42	105.62	0					27	22	2	0	0	0	0.37637	1	27176	27176		14.405	0	1	110190	+		11124	10976	7377	7430	15208	15208					0.032644956721242124
LNKSRYLLYI	10	Unmodified	_LNKSRYLLYI_					0	0	0			REV__tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1	REV__tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8824462890625	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.468	1	93.468	92.968	93.968	0								0	0	0	0.33877	1	23559	23559		1.6526	0.58116	1		+		11125	13044	7378	7431	15209	15209					0.11490511391002656
LNKYPIFSH	9	Unmodified	_LNKYPIFSH_					0	0	0		ENST00000522941.5_2_8:130867908-130883640:-|nuORF	ENST00000522941.5_2_8:130867908-130883640:-|nuORF	ENST00000522941.5_2_8:130867908-130883640:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.80322265625	2	559.803291	1117.59203	-0.063091	-3.5319E-05	-0.25548	-0.00014302	-0.31857	-0.00017834	559.8033381072966	40.044	0.9228	40.044	39.836	40.759	0					68	32	4	0	0	0	0.26684	1	7287	7287		10.824	0	1	231800			11126	6971	7379	7432	15210	15210					0.03793735714248214
LNLHWFFFH	9	Unmodified	_LNLHWFFFH_					0	0	0			REV__ENST00000454360.1_1_22:17054334-17055434:+|nuORF	REV__ENST00000454360.1_1_22:17054334-17055434:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.8178100585938	2	630.819276	1259.624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.777	1	22.879	22.379	23.379	0.10178								0	0	0	0.29233	1	2114	2114		0.6015	0.076735	1		+		11127	11938	7380	7433	15211	15211					0.0045714818802480295
LNLIDDNGF	9	Unmodified	_LNLIDDNGF_					0	0	0			REV__nc|ENSG00000106479|O60290-2|ZNF862	REV__nc|ENSG00000106479|O60290-2|ZNF862	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.8079528808594	2	510.753464	1019.49238	0.40423	0.00020646	-2.5364	-0.0012955	-2.1322	-0.001089	510.7526749190839	62.748	0.23214	62.748	62.605	62.837	0					9	7	2	0	0	0	0.25281	1	14180	14180		6.7232	1.9672	1	31482	+		11128	8575	7381	7434	15212	15212					-0.016591266903787982
LNNITFNLTF	10	Unmodified	_LNNITFNLTF_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8185424804688	2	598.819138	1195.62372	0.6694	0.00040085	-0.45675	-0.00027351	0.21265	0.00012734	598.8186964632474	67.301	0.83594	67.366	67.101	67.937	0.065071					76	28	4	0	0	0	0.39071	1	15527	15527		12.873	0.69786	1	1325500	+		11129	10526	7382	7435	15213	15213					0.03373683677500594
LNPDYESIF	9	Unmodified	_LNPDYESIF_					0	0	0			REV__nc|ENSG00000103710|Q9NYN1-2|RASL12	REV__nc|ENSG00000103710|Q9NYN1-2|RASL12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2628173828125	2	549.261122	1096.50769	0.67314	0.00036973	0.90307	0.00049602	1.5762	0.00086575	549.2613768670824	80.188	0.33326	80.212	80.046	80.379	0.023605					23	11	3	0	0	0	0.091044	2	19358	19338;19358		34.402	10.381	1	326570	+		11130	8489	7383	7436	15214;15215	15215					-0.03670259893192451
LNSPHPGPIR	10	Unmodified	_LNSPHPGPIR_					0	0	0		ENSG00000150510|ENST00000322475|FAM124A;nc|ENSG00000150510|Q86V42-2|FAM124A	ENSG00000150510|ENST00000322475|FAM124A	ENSG00000150510|ENST00000322475|FAM124A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.30419921875	2	544.30399	1086.59343	0.2939	0.00015997	-0.34398	-0.00018723	-0.05008	-2.7259E-05	544.3039458946935	37.456	0.62846	37.456	37.129	37.758	0					39	22	2	0	0	0	0.42901	1	6500	6500		8.7454	2.0222	1	51572			11131	3431	7384	7437	15216	15216					0.053593698029771986
LNSSQNFTN	9	Unmodified	_LNSSQNFTN_					0	0	0			REV__ENST00000600692.5_1_19:21350445-21366834:+|nuORF	REV__ENST00000600692.5_1_19:21350445-21366834:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7782592773438	2	512.738345	1023.46214	-0.17614	-9.0315E-05	-0.30192	-0.00015481	-0.47806	-0.00024512	513.2380595576171	40.307	0.3291	40.307	40.151	40.481	0					15	11	2	0	0	0	0.25746	1	7424	7424		3.2813	1.2216	1	17220	+		11132	10831	7385	7438	15217	15217					-0.048654853555717636
LNTLDHTTEIS	11	Unmodified	_LNTLDHTTEIS_					0	0	0		nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB;ENST00000493538.5_1_2:25803688-25875529:-|nuORF;ENST00000472690.5_1_2:25819066-25872751:-|nuORF;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB	nc|ENSG00000138101|O60941-6|DTNB	nc|ENSG00000138101|O60941-6|DTNB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.2957153320312	2	622.311874	1242.6092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.502	1	71.502	71.002	72.002	0								0	0	0	0.31149	1	16863	16863		10.8	0.72558	1				11133	2892	7386	7439	15218	15218					-0.0024043326127412
LNTRKLDMPET	11	Unmodified	_LNTRKLDMPET_					0	0	0		ENSG00000272899|ENST00000609480|ATP6V1FNB	ENSG00000272899|ENST00000609480|ATP6V1FNB	ENSG00000272899|ENST00000609480|ATP6V1FNB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.88616943359375	3	439.899222	1316.67584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.525	1	28.525	28.025	29.025	0								0	0	0	0.33897	1	3864	3864		1.1098	0	1				11134	5740	7387	7440	15219	15219					0.030164790289745724
LNTYSVTRVDS	11	Unmodified	_LNTYSVTRVDS_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8197021484375	2	627.819867	1253.62518	-0.46916	-0.00029455	0.76815	0.00048226	0.29899	0.00018771	627.8200713007351	40.676	0.25682	40.676	40.53	40.787	0					14	8	2	0	0	0	0.41254	1	7483	7483		0	0	1	23425	+		11135	9903	7388	7441	15220	15220					0.008512729756375848
LNVAYRRCL	9	Unmodified	_LNVAYRRCL_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7875366210938	2	554.308218	1106.60188	0.51559	0.00028579	-0.90092	-0.00049939	-0.38533	-0.00021359	554.3076373765772	87.98	0.6172	88.01	87.686	88.303	0.030037					36	21	2	0	0	0	0.2446	1	21788	21788		11.64	0.81637	1	197970			11136	3174	7389	7442	15221	15221					0.052846004479533804
LNVLCGLFG	9	Unmodified	_LNVLCGLFG_					0	0	0			REV__ENSG00000182372|ENST00000331222|CLN8	REV__ENSG00000182372|ENST00000331222|CLN8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.2558288574219	2	468.254588	934.494624	0.21289	9.9686E-05	1.6195	0.00075832	1.8324	0.00085801	468.25530264263057	77.617	1.0627	77.651	77.417	78.48	0.034485					52	36	2	0	0	0	0.31136	1	18589	18589		5.2307	0.47466	1	92144	+		11137	10562	7390	7443	15222	15222					0.02475630513742999
LNVSKERK	8	Unmodified	_LNVSKERK_					0	0	0		SMYD1|p.E260K|1|0.16|ENSG00000115593|chr2:88096674-88096674|G/A|missense_variant	SMYD1|p.E260K|1|0.16|ENSG00000115593|chr2:88096674-88096674|G/A|missense_variant	SMYD1|p.E260K|1|0.16|ENSG00000115593|chr2:88096674-88096674|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2923583984375	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.98	1	95.98	95.48	96.48	0								0	0	0	0.38822	1	24323	24323		2.0598	0	1				11138	13375	7391	7444	15223	15223					0.08424565054428967
LNVTKDRVT	9	Unmodified	_LNVTKDRVT_					0	0	0			REV__ENST00000476656.1_1_6:70589459-70599853:+|nuORF	REV__ENST00000476656.1_1_6:70589459-70599853:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037109375	2	523.303655	1044.59276	0.56542	0.00029589	-0.78269	-0.00040958	-0.21726	-0.00011369	523.303285734493	85.191	0.71498	85.214	84.812	85.527	0.023125					55	29	2	0	0	0	0.30397	1	20898	20898		6.2058	0.9089	1	287440	+		11139	12057	7392	7445	15224	15224					0.07224530363282611
LNVVFVILD	9	Unmodified	_LNVVFVILD_					0	0	0			REV__CENPM|p.H73Y|1|0.12|ENSG00000100162|chr22:41945926-41945926|G/A|missense_variant	REV__CENPM|p.H73Y|1|0.12|ENSG00000100162|chr22:41945926-41945926|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3103637695312	2	516.310418	1030.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.806	1	99.848	99.348	100.35	0.042839								0	0	0	0.28631	1	25330	25330		1.8442	0.19162	1		+		11140	7757	7393	7446	15225	15225					0.0922038814253483
LNYANVKHQI	10	Unmodified	_LNYANVKHQI_					0	0	0			REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant	REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3294677734375	2	600.330205	1198.64586	-0.090502	-5.4331E-05	0.10146	6.0907E-05	0.010954	6.5758E-06	600.3302622203663	43.225	2.3021	43.225	42.999	45.301	0					192	81	5	0	0	0	0.45794	1	8866	8866		3.2813	0.28607	1	1800600	+		11141	10587	7394	7447	15226	15226					0.054479081459248846
LNYANVKHQI	10	Unmodified	_LNYANVKHQI_					0	0	0			REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant	REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.5413208007812	2	600.330205	1198.64586	-0.021088	-1.266E-05	0.19485	0.00011697	0.17376	0.00010431	600.3303091675328	43.147	1.181	43.237	42.98	44.161	0.089764					117	42	5	0	0	0	0.45794	1	8058	8058		3.2813	0.28607	1	1690800	+		11142	10587	7394	7447	15227	15227					0.054479081459248846
LNYCQKESWC	10	Unmodified	_LNYCQKESWC_					0	0	0		ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF;ENSG00000174871|ENST00000311445|CNIH2	ENST00000528063.5_1_11:66049809-66051065:+|nuORF	ENST00000528063.5_1_11:66049809-66051065:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.2705688476562	2	637.270641	1272.52673	-0.039771	-2.5345E-05	-0.66859	-0.00042607	-0.70836	-0.00045142	637.2702014972789	86.663	0.40898	86.663	86.467	86.876	0					37	15	3	0	0	0	0.42335	2	21513	21467;21513		9.3831	3.6513	1	525940			11143	4602	7395	7448	15228;15229	15229					-0.09863369865433924
LNYCQKESWC	10	Unmodified	_LNYCQKESWC_					0	0	0		ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF;ENSG00000174871|ENST00000311445|CNIH2	ENST00000528063.5_1_11:66049809-66051065:+|nuORF	ENST00000528063.5_1_11:66049809-66051065:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.2704467773438	2	637.270641	1272.52673	0.18093	0.0001153	-0.81218	-0.00051758	-0.63125	-0.00040227	637.2701622955449	86.638	0.37534	86.666	86.484	86.859	0.027573					29	16	2	0	0	0	0.44496	1	21315	21315		5.7319	0.43497	1	510290			11144	4602	7395	7448	15230	15230					-0.09863369865433924
LNYIVRTLAEA	11	Unmodified	_LNYIVRTLAEA_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5753479003906	3	421.574955	1261.70304	-0.18212	-7.6778E-05	0.6775	0.00028562	0.49537	0.00020884	421.57520502576835	41.071	1.9481	41.071	39.661	41.609	0					97	69	2	0	0	0	0.41448	1	7435	7435		1.0136	0.31591	1	42526	+		11145	8979	7396	7449	15231	15231					0.08265330631684265
LPAAAWAPLL	10	Unmodified	_LPAAAWAPLL_					0	0	0			REV__ENST00000296861.2_1_6:47277434-47277623:-|nuORF	REV__ENST00000296861.2_1_6:47277434-47277623:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2547607421875	2	511.805303	1021.59605	0.52932	0.00027091	-0.33245	-0.00017015	0.19687	0.00010076	511.80510870924735	69.931	0.27671	69.931	69.791	70.067	0					16	9	2	0	0	0	0.31667	1	16368	16368		7.9102	0	1	73137	+		11146	11328	7397	7450	15232	15232					0.0861182520792454
LPAADTWISL	10	Unmodified	_LPAADTWISL_					0	0	0		ENST00000527156.1_3_1:90309067-90309214:+|nuORF	ENST00000527156.1_3_1:90309067-90309214:+|nuORF	ENST00000527156.1_3_1:90309067-90309214:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7951049804688	2	543.795132	1085.57571	0.70805	0.00038503	-0.45148	-0.00024551	0.25656	0.00013952	543.7947785111554	84.09	0.57009	84.09	83.749	84.319	0					45	23	3	0	0	0	0.071862	1	20696	20696		51.63	17.228	1	824880			11147	7001	7398	7451	15233	15233					0.03634609757477847
LPAADTWISL	10	Unmodified	_LPAADTWISL_					0	0	0		ENST00000527156.1_3_1:90309067-90309214:+|nuORF	ENST00000527156.1_3_1:90309067-90309214:+|nuORF	ENST00000527156.1_3_1:90309067-90309214:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	543.795132	1085.57571	0.42411	0.00023063	-0.14119	-7.6778E-05	0.28292	0.00015385	543.7949166857428	84.11	0.45541	84.132	83.866	84.321	0.021744	0.020756	0.00018748	NaN	51.63	44	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	998360			11148	7001	7398	7451							0.03634609757477847
LPAAGVGDMV	10	Oxidation (M)	_LPAAGVGDM(Oxidation (M))V_		LPAAGVGDM(1)V		LPAAGVGDM(82)V	0	0	1		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2395935058594	2	473.239135	944.463718	-0.058553	-2.771E-05	-0.096017	-4.5439E-05	-0.15457	-7.3148E-05	473.2390877228583	49.416	0.57048	49.416	49.223	49.794	0					38	19	3	0	0	0	0.0038249	1	10118	10118		81.613	47.211	1	241350			11149	2304	7399	7452	15234	15234		146			-0.010735675911632825
LPAAGVGDMV	10	Oxidation (M)	_LPAAGVGDM(Oxidation (M))V_		LPAAGVGDM(1)V		LPAAGVGDM(44)V	0	0	1		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.24005126953125	2	473.239135	944.463718	-0.14567	-6.8935E-05	0.40931	0.0001937	0.26364	0.00012476	473.2392400205505	49.32	0.5045	49.397	49.185	49.689	0.076607					31	17	2	0	0	0	0.11192	1	9959	9959		43.858	21.122	1	199400			11150	2304	7399	7452	15235	15235		146			-0.010735675911632825
LPAAGVGDMVM	11	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_		LPAAGVGDM(1)VM(1)		LPAAGVGDM(190)VM(190)	0	0	2		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.757080078125	2	546.756835	1091.49912	0.37884	0.00020713	-0.25778	-0.00014095	0.12105	6.6187E-05	546.756793178948	47.072	0.89625	47.072	46.744	47.64	0					114	31	5	0	0	0	3.0325E-14	4	9423	9377;9423;9465;9510		188.58	154.47	1	2584700			11151	2304	7400	7453	15236;15237;15238;15239	15237		146;147			-0.04297273125666834
LPAAGVGDMVM	11	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_		LPAAGVGDM(1)VM(1)		LPAAGVGDM(180)VM(180)	0	0	2		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7569580078125	2	546.756835	1091.49912	0.22259	0.0001217	0.07771	4.2489E-05	0.3003	0.00016419	546.7570486595955	49.533	4.103	49.533	47.64	51.743	0					339	142	5	0	0	0	6.6697E-14	10	10100	9865;10057;10100;10143;10185;10229;10271;10316;10358;10411		180.01	150.93	1	1517200			11152	2304	7400	7453	15240;15241;15242;15243;15244;15245;15246;15247;15248;15249	15242		146;147			-0.04297273125666834
LPAAGVGDMVM	11	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_		LPAAGVGDM(1)VM(1)		LPAAGVGDM(180)VM(180)	0	0	2		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.757080078125	2	546.756835	1091.49912	0.35343	0.00019324	-0.14151	-7.7372E-05	0.21192	0.00011587	546.7568225347235	46.977	1.4062	47.06	46.711	48.117	0.083096					144	55	6	0	0	0	6.6697E-14	4	9293	9205;9249;9293;9337		180.01	143.97	1	2050900			11153	2304	7400	7453	15250;15251;15252;15253	15252		146;147			-0.04297273125666834
LPAAGVGDMVM	11	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_		LPAAGVGDM(1)VM(1)		LPAAGVGDM(180)VM(180)	0	0	2		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7576293945312	2	546.756835	1091.49912	0.20573	0.00011248	0.24143	0.000132	0.44716	0.00024449	546.7571249989952	49.385	3.0494	49.461	48.111	51.16	0.076607					288	109	4	0	0	0	6.6697E-14	8	10023	9937;9980;10023;10070;10118;10167;10212;10267		180.01	150.93	1	1115500			11154	2304	7400	7453	15254;15255;15256;15257;15258;15259;15260;15261	15256		146;147			-0.04297273125666834
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM_		LPAAGVGDM(0.999)VM(0.001)		LPAAGVGDM(31)VM(-31)	0	0	1		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.759765625	2	538.759378	1075.5042	0.52272	0.00028162	-0.35289	-0.00019012	0.16982	9.1495E-05	538.7592926039889	57.708	0.51033	57.708	57.489	57.999	0					44	17	3	0	0	0	0.0068688	1	12646	12646		78.728	65.686	2	464180			11155	2304	7400	7454	15262	15262		146;147			-0.03052969263058003
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDMVM(Oxidation (M))_		LPAAGVGDMVM(1)		LPAAGVGDM(-35)VM(35)	0	0	1		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.759521484375	2	538.759378	1075.5042	0.090873	4.8958E-05	0.43864	0.00023632	0.52951	0.00028528	538.7594758084699	58.381	0.47775	58.381	58.256	58.734	0					33	17	3	0	0	0	0.0077594	1	12863	12863		88.954	71.841	2	332990			11156	2304	7400	7454	15263	15263		146;147			-0.03052969263058003
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM_		LPAAGVGDM(0.5)VM(0.5)		LPAAGVGDM(0)VM(0)	0	0	1		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.759521484375	2	538.759378	1075.5042	0.50062	0.00026971	-0.24818	-0.00013371	0.25244	0.00013601	538.7593784272769	60.448	2.0805	60.448	59.308	61.389	0					166	77	4	0	0	0	0.0077594	5	13400	13353;13400;13442;13492;13561		111.29	88.551	2	674700			11157	2304	7400	7454	15264;15265;15266;15267;15268	15265		146;147			-0.03052969263058003
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM_		LPAAGVGDM(0.999)VM(0.001)		LPAAGVGDM(30)VM(-30)	0	0	1		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7594604492188	2	538.759378	1075.5042	0.51093	0.00027527	0.0031178	1.6797E-06	0.51405	0.00027695	538.7593861330611	57.617	0.64066	57.685	57.467	58.108	0.068375					40	23	3	0	0	0	0.013463	2	12484	12484;12531		71.922	59.682	2	419770			11158	2304	7400	7454	15269;15270	15269		146;147			-0.03052969263058003
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDMVM(Oxidation (M))_		LPAAGVGDM(0.001)VM(0.999)		LPAAGVGDM(-32)VM(32)	0	0	1		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7597045898438	2	538.759378	1075.5042	0.39024	0.00021024	-0.29811	-0.00016061	0.092128	4.9635E-05	538.7593516826014	58.271	0.88725	58.342	58.082	58.969	0.070477					50	31	3	0	0	0	0.013463	1	12698	12698		71.922	54.809	2	353930			11159	2304	7400	7454	15271	15271		146;147			-0.03052969263058003
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM_		LPAAGVGDM(0.5)VM(0.5)		LPAAGVGDM(0)VM(0)	0	0	1		ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	ENST00000577760.1_1_17:37008851-37009031:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7597045898438	2	538.759378	1075.5042	0.37534	0.00020222	-0.3493	-0.00018819	0.026044	1.4031E-05	538.7593387891402	60.182	2.0335	60.255	59.38	61.414	0.073418					180	73	4	0	0	0	0.0068688	3	13270	13180;13270;13316		99.799	81.653	2	553680			11160	2304	7400	7454	15272;15273;15274	15273		146;147			-0.03052969263058003
LPAALQRKTGR	11	Unmodified	_LPAALQRKTGR_					0	0	0			REV__ENST00000367519.8_2_6:146056790-146056913:-|nuORF	REV__ENST00000367519.8_2_6:146056790-146056913:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8721923828125	2	605.872571	1209.73059	0.72164	0.00043722	-1.1598	-0.00070266	-0.43812	-0.00026544	605.8718538020954	94.117	0.65237	94.117	93.914	94.566	0					65	34	3	0	0	0	0.39744	1	23763	23763		4.897	0.56777	1	359110	+		11161	11566	7401	7455	15275	15275					0.13411278682519878
LPAARKKI	8	Unmodified	_LPAARKKI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	448.33740234375	2	448.805637	895.596721	0.16735	7.5107E-05	1.2085	0.00054238	1.3758	0.00061749	448.8059919035193	111.15	0.06234	111.16	111.12	111.19	0.015671					10	7	2	0	0	0	0.3576	1	28353	28353		0.79363	0	1	170860	+		11162	9733	7402	7456	15276	15276					0.1447466464765057
LPADEVDTQL	10	Unmodified	_LPADEVDTQL_					0	0	0		ENST00000470083.5_1_6:31765536-31774578:-|nuORF;ENSG00000204392|ENST00000375661|LSM2	ENST00000470083.5_1_6:31765536-31774578:-|nuORF	ENST00000470083.5_1_6:31765536-31774578:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.77734375	2	550.777136	1099.53972	0.47446	0.00026132	-0.33264	-0.00018321	0.14182	7.8113E-05	550.7767444569787	57.886	0.34966	57.886	57.65	57.999	0					18	11	2	0	0	0	0.22118	1	12723	12723		31.268	5.869	1	105990			11163	5469	7403	7457	15277	15277					-0.006068922100439522
LPAEEAPAL	9	Unmodified	_LPAEEAPAL_					0	0	0		ENST00000493307.1_1_7:150020415-150021458:+|nuORF;ENST00000323078.7_1_7:150020415-150033884:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020415-150021458:+|nuORF	ENST00000493307.1_1_7:150020415-150021458:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.7469787597656	2	455.74765	909.480748	0.50977	0.00023233	0.31659	0.00014428	0.82636	0.00037661	455.7472779208064	55.847	0.31502	55.847	55.72	56.035	0					14	10	2	0	0	0	0.1182	1	12109	12109		28.487	17.663	1	78255			11164	6038	7404	7458	15278	15278					0.02238676286287955
LPAEVLDSL	9	Unmodified	_LPAEVLDSL_					0	0	0		TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant;ENSG00000120708|ENST00000442011|TGFBI	TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant	TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.76824951171875	2	478.768583	955.522613	0.21176	0.00010139	-0.014447	-6.9166E-06	0.19732	9.4469E-05	478.76843386917216	75.027	0.40144	75.027	74.823	75.225	0					30	14	3	0	0	0	0.0097093	2	17923	17923;17973		68.081	22.06	1	522750			11165	2131	7405	7459	15279;15280	15279					0.04307231974826209
LPAEVLDSL	9	Unmodified	_LPAEVLDSL_					0	0	0		TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant;ENSG00000120708|ENST00000442011|TGFBI	TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant	TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.768310546875	2	478.768583	955.522613	0.10689	5.1175E-05	0.15484	7.4134E-05	0.26173	0.00012531	478.76843304786735	75.007	0.45599	75.051	74.841	75.297	0.044037					27	16	2	0	0	0	0.0097093	2	17758	17758;17816		68.081	22.06	1	302540			11166	2131	7405	7459	15281;15282	15281					0.04307231974826209
LPAFIMITL	9	Unmodified	_LPAFIMITL_					0	0	0		tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.80413818359375	2	509.803914	1017.59328	0.75821	0.00038654	-0.42561	-0.00021698	0.3326	0.00016956	509.803620416363	80.911	3.0319	80.911	79.958	82.99	0					316	105	4	0	0	0	0.3354	2	19601	19601;19870		2.0598	0	1	1350800			11167	13693	7406	7460	15283;15284	15283					0.08518233758763927
LPAFIMITL	9	Unmodified	_LPAFIMITL_					0	0	0		tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.803955078125	2	509.803914	1017.59328	0.30833	0.00015719	-0.24244	-0.0001236	0.065887	3.359E-05	509.8036784681964	78.773	1.9718	78.803	78.138	80.11	0.030159					156	69	3	0	0	0	0.3182	2	18964	18964;19132		4.3292	4.3292	1	718540			11168	13693	7406	7460	15285;15286	15285					0.08518233758763927
LPAFIMITL	9	Unmodified	_LPAFIMITL_					0	0	0		tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8036193847656	2	509.803914	1017.59328	0.53124	0.00027083	-0.2345	-0.00011955	0.29675	0.00015128	509.8037313893562	80.9	2.9942	80.923	80.075	83.069	0.023605					311	107	4	0	0	0	0.3354	2	19374	19374;19664		2.0598	2.0598	1	2164500			11169	13693	7406	7460	15287;15288	15287					0.08518233758763927
LPAGDALLQM	10	Oxidation (M)	_LPAGDALLQM(Oxidation (M))_		LPAGDALLQM(1)		LPAGDALLQM(65)	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7737426757812	2	522.773342	1043.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.507	1	60.507	60.007	61.007	0								0	0	0	0.03736	1	13511	13511		65.235	21.377	1				11170	4222	7407	7461	15289	15289		253			0.012106769886713664
LPAGDALLQM	10	Oxidation (M)	_LPAGDALLQM(Oxidation (M))_		LPAGDALLQM(1)		LPAGDALLQM(56)	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7730102539062	2	522.773342	1043.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.531	1	60.604	60.104	61.104	0.073421								0	0	0	0.059922	1	13382	13382		56.177	12.319	1				11171	4222	7407	7461	15290	15290		253			0.012106769886713664
LPAGEESEEGP	11	Unmodified	_LPAGEESEEGP_					0	0	0			REV__ENST00000297107.10_1_5:153797146-153797353:+|nuORF	REV__ENST00000297107.10_1_5:153797146-153797353:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7490844726562	2	557.748576	1113.4826	0.52352	0.00029199	-1.5266	-0.00085143	-1.003	-0.00055944	557.7477034177236	46.965	0.64079	47.048	46.79	47.431	0.083096					52	24	3	0	0	0	0.38057	1	9227	9227		8.7454	2.0222	1	241690	+		11172	11329	7408	7462	15291	15291					-0.06960359486402012
LPAGIVAVL	9	Unmodified	_LPAGIVAVL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.7812805175781	2	426.781296	851.54804	0.97996	0.00041823	-0.58023	-0.00024763	0.39973	0.0001706	426.78095976206936	81.027	0.45164	81.027	80.813	81.265	0					33	14	3	0	0	0	0.081567	1	19786	19786		36.466	0	1	168940			11173	2198	7409	7463	15292	15292					0.11632751287891097
LPAGIVAVL	9	Unmodified	_LPAGIVAVL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.78118896484375	2	426.781296	851.54804	0.42609	0.00018185	0.02494	1.0644E-05	0.45103	0.00019249	426.781184160357	81.077	0.45888	81.101	80.851	81.31	0.023605					37	15	3	0	0	0	0.081567	2	19593	19593;19640		36.466	0	1	288280			11174	2198	7409	7463	15293;15294	15293					0.11632751287891097
LPAKGCLKL	9	Unmodified	_LPAKGCLKL_					0	0	0		ENSG00000136158|ENST00000377104|SPRY2	ENSG00000136158|ENST00000377104|SPRY2	ENSG00000136158|ENST00000377104|SPRY2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7845764160156	2	471.793881	941.573209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.348	1	54.348	53.848	54.848	0								0	0	0	0.28631	1	11637	11637		1.8442	0.36234	1				11175	2773	7410	7464	15295	15295					0.10008482818807352
LPAKQAELTRR	11	Unmodified	_LPAKQAELTRR_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8828125	2	641.883136	1281.75172	0.31039	0.00019924	-0.88194	-0.0005661	-0.57155	-0.00036687	641.8823509531409	88.617	0.77555	88.617	88.181	88.956	0					79	30	3	0	0	0	0.41369	1	22036	22036		1.1933	0	1	407930			11176	1160	7411	7465	15296	15296					0.12211243991373522
LPALEVLDL	9	Unmodified	_LPALEVLDL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7945861816406	2	491.794601	981.574648	0.4236	0.00020832	-0.19216	-9.4502E-05	0.23144	0.00011382	491.79445927021214	91.386	0.58851	91.386	91.063	91.652	0					45	21	4	0	0	0	0.083124	2	22899	22899;22948		36.127	15.673	1	459580			11177	3368	7412	7466	15297;15298	15297					0.08312395388554705
LPALEVLDL	9	Unmodified	_LPALEVLDL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7946472167969	2	491.794601	981.574648	0.20436	0.0001005	0.19986	9.8288E-05	0.40421	0.00019879	491.79464516473405	91.337	0.49732	91.372	91.169	91.666	0.035446					40	17	4	0	0	0	0.047633	2	22743	22743;22791		43.858	18.459	1	381540			11178	3368	7412	7466	15299;15300	15299					0.08312395388554705
LPALLLLLLLR	11	Unmodified	_LPALLLLLLLR_					0	0	0		nc|ENSG00000134470|Q13261-9|IL15RA;nc|ENSG00000134470|Q13261-8|IL15RA;nc|ENSG00000134470|Q13261-7|IL15RA;nc|ENSG00000134470|Q13261-6|IL15RA;nc|ENSG00000134470|Q13261-5|IL15RA;nc|ENSG00000134470|Q13261-3|IL15RA;nc|ENSG00000134470|Q13261-4|IL15RA;ENSG00000134470|ENST00000379977|IL15RA	nc|ENSG00000134470|Q13261-9|IL15RA	nc|ENSG00000134470|Q13261-9|IL15RA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.4427490234375	2	624.444309	1246.87407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.68	1	110.69	110.19	111.19	0.015678								0	0	0	0.34125	1	28244	28244		0.30703	0	1				11179	2672	7413	7467	15301	15301					0.2605031274092653
LPALLLLLLLR	11	Unmodified	_LPALLLLLLLR_					0	0	0		nc|ENSG00000134470|Q13261-9|IL15RA;nc|ENSG00000134470|Q13261-8|IL15RA;nc|ENSG00000134470|Q13261-7|IL15RA;nc|ENSG00000134470|Q13261-6|IL15RA;nc|ENSG00000134470|Q13261-5|IL15RA;nc|ENSG00000134470|Q13261-3|IL15RA;nc|ENSG00000134470|Q13261-4|IL15RA;ENSG00000134470|ENST00000379977|IL15RA	nc|ENSG00000134470|Q13261-9|IL15RA	nc|ENSG00000134470|Q13261-9|IL15RA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.4419555664062	2	624.444309	1246.87407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.27	1	111.29	110.79	111.79	0.015678								0	0	0	0.34125	1	28377	28377		0.30703	0	1				11180	2672	7413	7467	15302	15302					0.2605031274092653
LPALYSLLF	9	Unmodified	_LPALYSLLF_					0	0	0		nc|ENSG00000186810|P49682-3|CXCR3;CXCR3|p.N152Pfs*209|1|0.24|ENSG00000186810|chrX:71617019-71617020|-/AGGT|frameshift_variant;ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3	nc|ENSG00000186810|P49682-3|CXCR3	nc|ENSG00000186810|P49682-3|CXCR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7894897460938	2	518.807511	1035.60047	0.42413	0.00022004	3.0858	0.0016009	3.5099	0.001821	518.8091262561989	94.424	0.64872	94.424	94.218	94.866	0					66	27	3	0	0	0	0.2491	1	23979	23979		8.5933	3.3626	1	442670			11181	260	7414	7468	15303	15303					0.08409289630844796
LPALYSLLF	9	Unmodified	_LPALYSLLF_					0	0	0		nc|ENSG00000186810|P49682-3|CXCR3;CXCR3|p.N152Pfs*209|1|0.24|ENSG00000186810|chrX:71617019-71617020|-/AGGT|frameshift_variant;ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3	nc|ENSG00000186810|P49682-3|CXCR3	nc|ENSG00000186810|P49682-3|CXCR3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	518.807511	1035.60047	0.31765	0.0001648	3.5604	0.0018472	3.8781	0.002012	518.8094734047959	94.304	0.83115	94.342	94.01	94.841	0.038086	-0.041071	0.00025983	NaN	18.135	78	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412710			11182	260	7414	7468							0.08409289630844796
LPAPEEEEA	9	Unmodified	_LPAPEEEEA_					0	0	0		ENSG00000144567|ENST00000430297|RETREG2	ENSG00000144567|ENST00000430297|RETREG2	ENSG00000144567|ENST00000430297|RETREG2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7445983886719	2	492.729655	983.444756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.619	1	40.708	40.208	41.208	0.089645								0	0	0	0.24995	1	7352	7352		9.3474	1.1919	1				11183	3217	7415	7469	15304	15304					-0.04762825681234517
LPAPFEESL	9	Unmodified	_LPAPFEESL_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.7611389160156	2	501.760758	1001.50696	0.041837	2.0992E-05	0.79951	0.00040116	0.84135	0.00042215	501.7610761290978	73.461	0.56837	73.461	73.202	73.77	0					44	20	3	0	0	0	0.0043406	2	17449	17449;17502		97.075	42.301	1	843120			11184	4532	7416	7470	15305;15306	15305					0.006269454577591205
LPAPFEESL	9	Unmodified	_LPAPFEESL_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.7610778808594	2	501.760758	1001.50696	0.23237	0.00011659	0.3908	0.00019609	0.62316	0.00031268	501.7609275570631	73.336	0.59973	73.389	73.152	73.752	0.052567					43	23	2	0	0	0	0.0043406	2	17266	17266;17315		97.075	51.054	1	525280			11185	4532	7416	7470	15307;15308	15307					0.006269454577591205
LPAPIEKTI	9	Unmodified	_LPAPIEKTI_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211893|P01859|IGHG2	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.3026428222656	2	491.302593	980.590633	0.19227	9.4462E-05	0.1363	6.6967E-05	0.32857	0.00016143	491.3025336058468	49.479	0.62647	49.479	49.223	49.85	0					52	21	3	0	0	0	0.0068798	2	10177	10128;10177		76.825	22.051	1	449530			11186	7601	7417	7471	15309;15310	15310					0.09956101625471092
LPAPIEKTI	9	Unmodified	_LPAPIEKTI_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211893|P01859|IGHG2	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.302734375	2	491.302593	980.590633	0.13621	6.6919E-05	0.25873	0.00012711	0.39494	0.00019403	491.3025710602827	49.408	0.62248	49.485	49.249	49.871	0.076607					49	22	3	0	0	0	0.0097877	2	10034	9985;10034		67.838	21.817	1	328060			11187	7601	7417	7471	15311;15312	15312					0.09956101625471092
LPAPPTQNM	9	Oxidation (M)	_LPAPPTQNM(Oxidation (M))_		LPAPPTQNM(1)		LPAPPTQNM(100)	0	0	1		SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;ENSG00000141380|ENST00000415083|SS18	SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7444763183594	2	492.744585	983.474617	-0.23881	-0.00011767	0.24662	0.00012152	0.007813	3.8498E-06	492.7446736211168	40.645	0.55976	40.645	40.408	40.967	0					44	19	3	0	0	0	0.003963	1	7507	7507		103.75	59.89	1	185190			11188	3053	7418	7472	15313	15313		198			-0.01778165216887828
LPAPPTQNM	9	Oxidation (M)	_LPAPPTQNM(Oxidation (M))_		LPAPPTQNM(1)		LPAPPTQNM(44)	0	0	1		SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;ENSG00000141380|ENST00000415083|SS18	SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7444152832031	2	492.744585	983.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.972	1	42.972	42.472	43.472	0								0	0	0	0.065902	1	8190	8190		43.858	18.459	1				11189	3053	7418	7472	15314	15314		198			-0.01778165216887828
LPAPPTQNM	9	Oxidation (M)	_LPAPPTQNM(Oxidation (M))_		LPAPPTQNM(1)		LPAPPTQNM(46)	0	0	1		SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;ENSG00000141380|ENST00000415083|SS18	SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7445983886719	2	492.744585	983.474617	-0.11556	-5.694E-05	-0.02181	-1.0747E-05	-0.13737	-6.7687E-05	492.7445867234507	40.541	0.51908	40.63	40.409	40.928	0.089645					45	20	4	0	0	0	0.099539	1	7352	7352		45.7	20.3	1	143550			11190	3053	7418	7472	15315	15315		198			-0.01778165216887828
LPAPVAESQR	10	Unmodified	_LPAPVAESQR_					0	0	0			REV__ENST00000335565.4_2_X:144899448-144902015:+|nuORF	REV__ENST00000335565.4_2_X:144899448-144902015:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.8096923828125	2	534.29583	1066.57711	0.55153	0.00029468	-0.4906	-0.00026213	0.06093	3.2555E-05	534.2955758512484	38.09	0.75288	38.174	37.87	38.623	0.08493					56	27	3	0	0	0	0.43214	1	6531	6531		8.1555	0	1	278820	+		11191	11438	7419	7473	15316	15316					0.04648243846236255
LPARDSPSL	9	Unmodified	_LPARDSPSL_					0	0	0		LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant;ENSG00000041802|ENST00000265245|LSG1	LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant	LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2637939453125	2	478.263999	954.513445	-0.035657	-1.7053E-05	-0.088493	-4.2323E-05	-0.12415	-5.9377E-05	478.26387287932926	36.842	1.3223	36.842	36.46	37.783	0					128	49	4	0	0	0	0.0077293	1	6300	6300		74.2	10.239	1	954980			11192	538	7420	7474	15317	15317					0.03436883409131042
LPARDSPSL	9	Unmodified	_LPARDSPSL_					0	0	0		LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant;ENSG00000041802|ENST00000265245|LSG1	LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant	LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2637939453125	2	478.263999	954.513445	-0.031019	-1.4835E-05	-0.005684	-2.7184E-06	-0.036703	-1.7554E-05	478.26391198906333	36.756	1.4119	36.838	36.455	37.867	0.081715					129	53	4	0	0	0	0.0097877	1	6144	6144		67.838	10.116	1	764740			11193	538	7420	7474	15318	15318					0.03436883409131042
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.E209Gfs*15|1|0.46|ENSG00000183087|chr13:113835600-113835601|CC/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	ENST00000476291.1_1_13:114550749-114566917:-|nuORF	ENST00000476291.1_1_13:114550749-114566917:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7770385742188	2	516.777274	1031.53999	0.36282	0.0001875	-0.31836	-0.00016452	0.044464	2.2978E-05	516.776955997317	37.88	0.65561	37.88	37.646	38.302	0					50	22	3	0	0	0	0.034936	1	6645	6645		47.594	20.711	1	184150			11194	4903	7421	7475	15319	15319					0.02548572300474916
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.E209Gfs*15|1|0.46|ENSG00000183087|chr13:113835600-113835601|CC/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	ENST00000476291.1_1_13:114550749-114566917:-|nuORF	ENST00000476291.1_1_13:114550749-114566917:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.77734375	2	516.777274	1031.53999	0.34101	0.00017623	0.2881	0.00014889	0.62911	0.00032511	516.7774424884685	37.754	0.63886	37.839	37.505	38.144	0.084476					46	21	4	0	0	0	0.029591	1	6488	6488		51.415	17.014	1	137600			11195	4903	7421	7475	15320	15320					0.02548572300474916
LPARNKILMLS	11	Unmodified	_LPARNKILMLS_					0	0	0		nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000498611.5_1_22:50657979-50682900:-|nuORF	nc|ENSG00000128159|Q96RT7-2|TUBGCP6	nc|ENSG00000128159|Q96RT7-2|TUBGCP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.3829345703125	2	628.381383	1254.74821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.973	1	89.973	89.473	90.473	0								0	0	0	0.32927	1	22494	22494		4.5289	0.93237	1				11196	2385	7422	7476	15321	15321					0.131028578932046
LPARRSPGPR	10	Unmodified	_LPARRSPGPR_					0	0	0		ENST00000533387.5_1_11:134123508-134129738:+|nuORF	ENST00000533387.5_1_11:134123508-134129738:+|nuORF	ENST00000533387.5_1_11:134123508-134129738:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8295288085938	2	553.830706	1105.64686	0.37059	0.00020524	-1.36	-0.0007532	-0.98939	-0.00054795	553.8297197854052	87.035	0.65818	87.062	86.672	87.33	0.027573					39	29	2	0	0	0	0.45794	1	21420	21420		3.2813	0	1	208780			11197	7038	7423	7477	15322	15322					0.09826167305527633
LPARRSPGPR	10	Unmodified	_LPARRSPGPR_					0	0	0		ENST00000533387.5_1_11:134123508-134129738:+|nuORF	ENST00000533387.5_1_11:134123508-134129738:+|nuORF	ENST00000533387.5_1_11:134123508-134129738:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	553.830706	1105.64686	0.3123	0.00017296	-1.146	-0.00063468	-0.83368	-0.00046172	553.8297879409453	87.052	0.35113	87.052	86.969	87.32	0	-0.005178	0.00014518	NaN	3.2813	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154120			11198	7038	7423	7477							0.09826167305527633
LPARRSPGPR	10	Unmodified	_LPARRSPGPR_					0	0	0		ENST00000533387.5_1_11:134123508-134129738:+|nuORF	ENST00000533387.5_1_11:134123508-134129738:+|nuORF	ENST00000533387.5_1_11:134123508-134129738:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	553.830706	1105.64686	0.37059	0.00020524	-1.36	-0.0007532	-0.98939	-0.00054795	553.8297197854052	87.035	0.65818	87.062	86.672	87.33	0.027573	0.005178	-9.185E-05	NaN	3.2813	39	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208780			11199	7038	7423	7477							0.09826167305527633
LPASPETHL	9	Unmodified	_LPASPETHL_					0	0	0		ENST00000584908.5_1_17:37856482-37868536:+|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2	ENST00000584908.5_1_17:37856482-37868536:+|nuORF	ENST00000584908.5_1_17:37856482-37868536:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7489929199219	2	482.758549	963.502546	-0.78823	-0.00038053	-0.019553	-9.4394E-06	-0.80779	-0.00038997	482.7585208220953	41.438	0.3587	41.438	41.291	41.65	0					18	13	2	0	0	0	0.19398	1	7738	7738		19.257	3.4098	1	47749			11200	3076	7424	7478	15323	15323					0.019334810348709652
LPASPETHL	9	Unmodified	_LPASPETHL_					0	0	0		ENST00000584908.5_1_17:37856482-37868536:+|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2	ENST00000584908.5_1_17:37856482-37868536:+|nuORF	ENST00000584908.5_1_17:37856482-37868536:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7489929199219	2	482.758549	963.502546	-0.62196	-0.00030026	0.094487	4.5614E-05	-0.52747	-0.00025464	482.7585393171785	41.394	0.38038	41.484	41.241	41.621	0.089764					21	14	2	0	0	0	0.18364	1	7576	7576		20.454	20.454	1	44386			11201	3076	7424	7478	15324	15324					0.019334810348709652
LPATIGDLI	9	Unmodified	_LPATIGDLI_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.77362060546875	2	456.773668	911.532783	0.91925	0.00041989	-0.87019	-0.00039748	0.049053	2.2406E-05	456.77322618033645	81.42	0.37059	81.42	81.202	81.573	0					19	12	2	0	0	0	0.19398	1	19885	19885		19.257	3.4098	1	137600			11202	4087	7425	7479	15325	15325					0.07347839700048553
LPATIGDLI	9	Unmodified	_LPATIGDLI_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7736511230469	2	456.773668	911.532783	0.40476	0.00018488	-0.25005	-0.00011422	0.15471	7.0668E-05	456.7735012126207	81.364	0.40774	81.386	81.162	81.57	0.021866					23	14	2	0	0	0	0.23216	1	19712	19712		14.838	0	1	103060			11203	4087	7425	7479	15326	15326					0.07347839700048553
LPAVDEKL	8	Unmodified	_LPAVDEKL_					0	0	0		ENST00000592257.5_2_19:45449319-45452503:+|nuORF;ENSG00000234906|ENST00000252490|APOC2	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.7579345703125	2	442.758018	883.501483	0.044539	1.972E-05	0.29905	0.00013241	0.34359	0.00015213	442.75797762893444	45.787	0.42162	45.787	45.647	46.069	0					37	14	3	0	0	0	0.18247	1	9040	9040		43.772	1.6778	1	177760			11204	5624	7426	7480	15327	15327					0.055072666659384595
LPAVDEKL	8	Unmodified	_LPAVDEKL_					0	0	0		ENST00000592257.5_2_19:45449319-45452503:+|nuORF;ENSG00000234906|ENST00000252490|APOC2	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.75811767578125	2	442.758018	883.501483	-0.058118	-2.5732E-05	0.43039	0.00019056	0.37227	0.00016483	442.7580848048557	45.727	0.55575	45.813	45.579	46.135	0.085617					41	21	3	0	0	0	0.18247	1	8892	8892		43.772	1.6778	1	139160			11205	5624	7426	7480	15328	15328					0.055072666659384595
LPAVFEEVL	9	Unmodified	_LPAVFEEVL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7868347167969	2	508.786776	1015.559	0.22353	0.00011373	0.0061221	3.1148E-06	0.22965	0.00011684	508.78655446553233	87.327	0.57942	87.327	87.024	87.603	0					47	22	3	0	0	0	0.12809	2	21668	21668;21718		26.884	11.036	1	303670			11206	446	7427	7481	15329;15330	15329					0.05184108871515036
LPAVFEEVL	9	Unmodified	_LPAVFEEVL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7871398925781	2	508.786776	1015.559	0.16415	8.3518E-05	0.008917	4.5368E-06	0.17307	8.8055E-05	508.7865908844062	87.206	0.58125	87.233	86.999	87.58	0.027573					55	23	3	0	0	0	0.17247	2	21482	21482;21538		21.747	5.8995	1	250520			11207	446	7427	7481	15331;15332	15331					0.05184108871515036
LPAVGEHVF	9	Unmodified	_LPAVGEHVF_					0	0	0		ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.76397705078125	2	484.763635	967.512717	0.35867	0.00017387	-0.25523	-0.00012373	0.10344	5.0143E-05	484.763463396421	54.408	0.24952	54.408	54.218	54.467	0					15	9	2	0	0	0	0.065541	1	11663	11663		39.957	14.558	1	92821			11208	3071	7428	7482	15333	15333					0.027660887600859496
LPAVGEHVF	9	Unmodified	_LPAVGEHVF_					0	0	0		ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	484.763635	967.512717	0.28836	0.00013979	-0.20542	-9.9582E-05	0.082936	4.0204E-05	484.7634335125986	54.378	0.26944	54.443	54.179	54.448	0.065128	0.017836	2.4137E-05	NaN	39.957	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70099			11209	3071	7428	7482							0.027660887600859496
LPAVPSDPIL	10	Unmodified	_LPAVPSDPIL_					0	0	0		PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1-TSPAN33|2|fusion	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.78521728515625	2	511.30005	1020.58555	0.18548	9.4836E-05	-0.22687	-0.000116	-0.041388	-2.1162E-05	511.29987280603217	59.637	1.0648	59.71	59.457	60.522	0.072342					94	39	3	0	0	0	0.3077	1	13292	13292		21.747	4.8044	1	1293200			11210	1513	7429	7483	15334	15334					0.07607797762852897
LPAWPPSTL	9	Unmodified	_LPAWPPSTL_					0	0	0			REV__ENST00000538884.1_1_17:38334521-38337576:+|nuORF	REV__ENST00000538884.1_1_17:38334521-38337576:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7312316894531	2	491.273835	980.533118	0.42957	0.00021104	-4.3277	-0.0021261	-3.8982	-0.0019151	491.27178313076337	53.723	0.41325	53.723	53.603	54.016	0					22	14	2	0	0	0	0.22289	1	11527	11527		18.135	1.1927	1	56538	+		11211	8613	7430	7484	15335	15335					0.04207259419899856
LPAWPPSTL	9	Unmodified	_LPAWPPSTL_					0	0	0			REV__ENST00000538884.1_1_17:38334521-38337576:+|nuORF	REV__ENST00000538884.1_1_17:38334521-38337576:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	491.273835	980.533118	0.43241	0.00021243	-4.7541	-0.0023356	-4.3217	-0.0021231	491.27150995317356	53.715	0.24348	53.78	53.701	53.945	0.06543	0.028887	-0.00029095	NaN	18.135	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50382	+		11212	8613	7430	7484							0.04207259419899856
LPCGFLWM	8	Unmodified	_LPCGFLWM_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7311706542969	2	483.732435	965.450316	-0.24934	-0.00012061	-1.5145	-0.00073263	-1.7639	-0.00085324	483.73168557509473	23.217	0.3423	23.319	23.136	23.479	0.10178					52	34	2	0	0	0	0.54081	1	2223	2223		0.79363	0	1	24081	+		11213	10464	7431	7485	15336	15336					-0.033790969041206154
LPCLPIYPC	9	Unmodified	_LPCLPIYPC_					0	0	0			REV__ENST00000485359.1_1_1:153912533-153913115:-|nuORF	REV__ENST00000485359.1_1_1:153912533-153913115:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7583923339844	2	509.758649	1017.50275	-0.017987	-9.1691E-06	-0.036395	-1.8553E-05	-0.054382	-2.7722E-05	509.7582766568118	23.706	0.44329	23.806	23.617	24.06	0.099739					96	40	3	0	0	0	0.25809	1	2344	2344		2.3027	0.24298	1	74552	+		11214	9268	7432	7486	15337	15337					-0.005305585611495189
LPDAHSDYA	9	Unmodified	_LPDAHSDYA_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.72216796875	2	494.722164	987.429775	0.081857	4.0496E-05	-0.6584	-0.00032572	-0.57654	-0.00028523	494.7221489401194	33.331	1.2764	33.331	32.905	34.181	0					65	47	2	0	0	0	0.14091	2	5270	5270;5313		25.399	18.11	1	199190			11215	5639	7433	7487	15338;15339	15338					-0.06444272758574243
LPDAHSDYA	9	Unmodified	_LPDAHSDYA_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.72198486328125	2	494.722164	987.429775	0.096068	4.7527E-05	0.079988	3.9572E-05	0.17606	8.7099E-05	494.7221726592305	33.292	0.66886	33.366	33.117	33.786	0.074322					60	26	3	0	0	0	0.12809	2	5133	5133;5178		26.884	18.973	1	164150			11216	5639	7433	7487	15340;15341	15340					-0.06444272758574243
LPDDDDEDE	9	Unmodified	_LPDDDDEDE_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.28076171875	2	531.690923	1061.36729	-0.11601	-6.1679E-05	-3.8644	-0.0020546	-3.9804	-0.0021163	531.6887740809327	44.157	0.20607	44.157	44.006	44.212	0					9	6	2	0	0	0	0.25504	1	8534	8534		4.756	2.1785	1	23264			11217	1053	7434	7488	15342	15342					-0.16093508408107482
LPDDFIDSL	9	Unmodified	_LPDDFIDSL_					0	0	0		ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF;NLN|p.E232Kfs*12|1|0.67|ENSG00000123213|chr5:65781293-65781293|G/-|frameshift_variant;ENSG00000123213|ENST00000380985|NLN	ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.7552490234375	2	517.755672	1033.49679	0.81323	0.00042106	-1.1305	-0.00058532	-0.31726	-0.00016426	517.7550218248068	84.431	0.33203	84.431	84.319	84.651	0					34	25	2	0	0	0	0.028398	1	20809	20809		52.268	19.963	1	957540			11218	6891	7435	7489	15343	15343					-0.0186166226746991
LPDDFVCYF	9	Unmodified	_LPDDFVCYF_					0	0	0		ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7651977539062	2	559.746793	1117.47903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.297	1	92.297	91.797	92.797	0								0	0	0	0.23452	1	23202	23202		12.532	0	1				11219	4748	7436	7490	15344	15344					-0.07500700793980286
LPDDILSQI	9	Unmodified	_LPDDILSQI_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.28009033203125	2	507.279315	1012.54408	0.7314	0.00037102	-0.40091	-0.00020337	0.33048	0.00016765	507.2792938679134	81.601	0.34664	81.601	81.434	81.78	0					16	11	2	0	0	0	0.26104	1	19954	19954		11.495	2.1116	1	55830			11220	605	7437	7491	15345	15345					0.03830617003529824
LPDDKVTAL	9	Unmodified	_LPDDKVTAL_					0	0	0		nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3	nc|ENSG00000160183|P57727-4|TMPRSS3	nc|ENSG00000160183|P57727-4|TMPRSS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2737121582031	2	486.274032	970.533512	0.02587	1.258E-05	-0.29134	-0.00014167	-0.26547	-0.00012909	486.27379017813405	46.696	0.79723	46.696	46.574	47.372	0					71	36	3	0	0	0	0.029591	1	9349	9349		51.415	1.4822	1	418800			11221	3750	7438	7492	15346	15346					0.0470663434908829
LPDDLGQLTAL	11	Unmodified	_LPDDLGQLTAL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3162231445312	2	578.316428	1154.6183	0.58648	0.00033917	-0.8519	-0.00049267	-0.26542	-0.0001535	578.3159151898759	82.466	0.70027	82.466	82.2	82.9	0					56	24	4	0	0	0	0.13029	1	20226	20226		62.869	25.794	1	695560			11222	3359	7439	7493	15347	15347					0.04717960095035778
LPDDLGQLTAL	11	Unmodified	_LPDDLGQLTAL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.31640625	2	578.316428	1154.6183	0.4057	0.00023462	-0.38662	-0.00022359	0.019076	1.1032E-05	578.3160772195491	82.431	0.63313	82.453	82.27	82.904	0.021744					55	22	4	0	0	0	0.11869	1	20053	20053		42.835	17.954	1	743130			11223	3359	7439	7493	15348	15348					0.04717960095035778
LPDDPAKTTM	10	Oxidation (M)	_LPDDPAKTTM(Oxidation (M))_		LPDDPAKTTM(1)		LPDDPAKTTM(110)	0	0	1		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000521093.1_1_5:150113023-150133188:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7658081054688	2	552.765714	1103.51688	0.0032379	1.7898E-06	0.1361	7.5233E-05	0.13934	7.7022E-05	552.7657453471136	31.488	2.0461	31.488	30.48	32.526	0					207	93	3	0	0	0	4.5636E-05	1	4738	4738		114.5	66.748	1	678950			11224	2605	7440	7494	15349	15349		168			-0.030742345991939146
LPDDPAKTTM	10	Oxidation (M)	_LPDDPAKTTM(Oxidation (M))_		LPDDPAKTTM(1)		LPDDPAKTTM(69)	0	0	1		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000521093.1_1_5:150113023-150133188:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7659912109375	2	552.765714	1103.51688	0.072852	4.027E-05	0.34863	0.00019271	0.42148	0.00023298	552.7658602564848	33.131	3.1028	33.131	32.487	35.589	0					332	122	3	0	0	0	0.019055	2	5254	5210;5254		68.76	35.974	1	253180			11225	2605	7440	7494	15350;15351	15351		168			-0.030742345991939146
LPDDPAKTTM	10	Oxidation (M)	_LPDDPAKTTM(Oxidation (M))_		LPDDPAKTTM(1)		LPDDPAKTTM(120)	0	0	1		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000521093.1_1_5:150113023-150133188:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.765869140625	2	552.765714	1103.51688	0.11258	6.2231E-05	-0.18523	-0.00010239	-0.072644	-4.0155E-05	552.7655435977704	31.447	1.4682	31.52	31.046	32.514	0.073782					160	71	5	0	0	0	2.9717E-05	2	4613	4573;4613		124.95	77.204	1	592240			11226	2605	7440	7494	15352;15353	15353		168			-0.030742345991939146
LPDDPAKTTM	10	Oxidation (M)	_LPDDPAKTTM(Oxidation (M))_		LPDDPAKTTM(1)		LPDDPAKTTM(41)	0	0	1		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000521093.1_1_5:150113023-150133188:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.76611328125	2	552.765714	1103.51688	0.16819	9.297E-05	0.4447	0.00024582	0.61289	0.00033879	552.7659447762762	33.093	2.1934	33.167	32.422	34.615	0.074322					239	96	3	0	0	0	0.13912	1	5113	5113		40.725	25.476	1	187640			11227	2605	7440	7494	15354	15354		168			-0.030742345991939146
LPDDPRQM	8	Unmodified	_LPDDPRQM_					0	0	0		nc|ENSG00000258289|Q8WUH1-1|CHURC1;ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2344970703125	2	486.234384	970.454216	-0.086708	-4.216E-05	-0.053261	-2.5898E-05	-0.13997	-6.8058E-05	486.2343878081109	39.164	0.64048	39.164	38.82	39.461	0					51	23	3	0	0	0	0.3528	1	7046	7046		19.257	5.7491	1	119450			11228	7620	7441	7495	15355	15355					-0.03219335876690366
LPDDPRQM	8	Unmodified	_LPDDPRQM_					0	0	0		nc|ENSG00000258289|Q8WUH1-1|CHURC1;ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2342529296875	2	486.234384	970.454216	0.0090326	4.392E-06	-0.072002	-3.501E-05	-0.06297	-3.0618E-05	486.23433963691843	39.083	0.57527	39.17	38.858	39.433	0.08688					48	22	3	0	0	0	0.34637	1	6883	6883		24.021	5.8856	1	96989			11229	7620	7441	7495	15356	15356					-0.03219335876690366
LPDDPRQMTL	10	Oxidation (M)	_LPDDPRQM(Oxidation (M))TL_		LPDDPRQM(1)TL		LPDDPRQM(42)TL	0	0	1		nc|ENSG00000258289|Q8WUH1-1|CHURC1;ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2975463867188	2	601.297713	1200.58087	-0.025355	-1.5246E-05	-0.18522	-0.00011137	-0.21057	-0.00012662	601.2976347927942	43.792	1.0053	43.792	43.439	44.444	0					84	35	3	0	0	0	0.12534	1	8466	8466		42.312	18.292	1	255520			11230	7620	7442	7496	15357	15357		335			-0.011394544422046238
LPDDPRQMTL	10	Unmodified	_LPDDPRQMTL_					0	0	0		nc|ENSG00000258289|Q8WUH1-1|CHURC1;ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	nc|ENSG00000258289|Q8WUH1-1|CHURC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2456665039062	2	593.300255	1184.58596	0.3251	0.00019288	0.59337	0.00035205	0.91847	0.00054493	593.3006884161059	55.738	0.80744	55.803	55.314	56.121	0.065128					82	29	4	0	0	0	0.28276	1	11876	11876		30.703	13.591	1	580140			11231	7620	7442	7497	15358	15358					0.001048494204042072
LPDEEIFQQL	10	Unmodified	_LPDEEIFQQL_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.314208984375	2	616.313886	1230.61322	0.30734	0.00018942	0.1724	0.00010625	0.47974	0.00029567	616.3139222832999	80.836	0.86298	80.836	80.598	81.461	0					95	29	5	0	0	0	4.1612E-05	3	19709	19675;19709;19753		117.76	81.254	1	2233300			11232	4321	7443	7498	15359;15360;15361	15360					0.007136562324149054
LPDEEIFQQL	10	Unmodified	_LPDEEIFQQL_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.3140869140625	2	616.313886	1230.61322	0.16281	0.00010034	0.23938	0.00014754	0.40219	0.00024788	616.3139665605935	80.844	0.8918	80.867	80.531	81.423	0.023605					84	30	4	0	0	0	5.4755E-05	2	19587	19541;19587		107.1	60.99	1	2462800			11233	4321	7443	7498	15362;15363	15363					0.007136562324149054
LPDEELQWVF	10	Unmodified	_LPDEELQWVF_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;nc|ENSG00000147955|Q99720-4|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.316162109375	2	638.316428	1274.6183	0.51001	0.00032555	0.45463	0.0002902	0.96464	0.00061575	638.316268499436	92.911	0.70448	92.911	92.634	93.339	0					50	26	3	0	0	0	0.43503	2	23406	23357;23406		7.609	3.2797	1	121360			11234	3348	7444	7499	15364;15365	15365					-0.008020399049883054
LPDEELQWVF	10	Unmodified	_LPDEELQWVF_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;nc|ENSG00000147955|Q99720-4|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.3169555664062	2	638.316428	1274.6183	0.48917	0.00031224	1.2338	0.00078754	1.7229	0.0010998	638.3162488327921	92.978	0.67291	93.016	92.615	93.288	0.037369					52	27	3	0	0	0	0.43503	1	23205	23205		7.609	4.6137	1	110550			11235	3348	7444	7499	15366	15366					-0.008020399049883054
LPDENREVL	9	Unmodified	_LPDENREVL_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000130052|Q92502|STARD8;nc|ENSG00000164741|Q96QB1-1|DLC1;ENSG00000130052|ENST00000374599|STARD8;nc|ENSG00000164741|Q96QB1-6|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.78515625	2	542.785296	1083.55604	-0.39883	-0.00021648	-0.031329	-1.7005E-05	-0.43016	-0.00023348	542.7851238114849	42.408	0.49173	42.408	42.162	42.654	0					28	16	2	0	0	0	0.31389	1	8048	8048		4.897	0.56777	1	84509			11236	4030	7445	7500	15367	15367					0.01760233746722406
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2902221679688	2	522.290214	1042.56587	0.18999	9.9229E-05	0.12114	6.3269E-05	0.31113	0.0001625	522.2901665189586	52.856	0.7803	52.856	52.555	53.335	0					113	29	6	0	0	0	2.5324E-06	2	11191	11191;11241		155.95	89.497	1	2991800			11237	1235	7446	7501	15368;15369	15368					0.046294217521108294
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.290283203125	2	522.290214	1042.56587	0.27332	0.00014275	0.081616	4.2627E-05	0.35494	0.00018538	522.2901153893953	52.794	0.74882	52.862	52.604	53.353	0.067173					120	32	5	0	0	0	0.0011298	3	11040	11040;11084;11127		121.35	61.272	1	2441300			11238	1235	7446	7501	15370;15371;15372	15370					0.046294217521108294
LPDFERESL	9	Unmodified	_LPDFERESL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant;ENST00000559886.1_1_15:64045105-64067822:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2802124023438	2	553.279846	1104.54514	0.38232	0.00021153	0.76033	0.00042068	1.1427	0.00063221	553.2802155884525	56.249	0.51393	56.316	56.144	56.657	0.066452					27	19	2	0	0	0	0.11816	1	12096	12096		28.495	1.6109	1	341530			11239	1385	7447	7502	15373	15373					-0.0029516862757645868
LPDFPALVL	9	Unmodified	_LPDFPALVL_					0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7917175292969	2	492.791861	983.569169	0.52031	0.00025641	-0.17017	-8.3856E-05	0.35015	0.00017255	492.79168124545754	96.897	0.52441	96.897	96.632	97.156	0					53	26	3	0	0	0	0.22344	2	24570	24570;24614		15.847	4.2069	1	454820			11240	3909	7448	7503	15374;15375	15374					0.07672716596744067
LPDFPALVL	9	Unmodified	_LPDFPALVL_					0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.791748046875	2	492.791861	983.569169	0.51521	0.00025389	-0.28137	-0.00013865	0.23384	0.00011524	492.79168222475914	96.853	0.55042	96.892	96.657	97.207	0.039764					56	26	3	0	0	0	0.25979	1	24408	24408		11.64	3.7301	1	422370			11241	3909	7448	7503	15376	15376					0.07672716596744067
LPDFTELDL	9	Unmodified	_LPDFTELDL_					0	0	0		ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7711791992188	2	531.771322	1061.52809	0.46059	0.00024493	-0.53849	-0.00028635	-0.077899	-4.1424E-05	531.7709266146618	88.45	0.5621	88.45	88.181	88.743	0					55	22	3	0	0	0	0.01943	2	22004	22004;22060		58.679	18.721	1	617260			11242	2555	7449	7504	15377;15378	15377					-0.00021089233382554085
LPDFTELDL	9	Unmodified	_LPDFTELDL_					0	0	0		ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.771240234375	2	531.771322	1061.52809	0.4778	0.00025408	-0.63171	-0.00033592	-0.1539	-8.184E-05	531.7709554314469	88.35	0.67987	88.38	88.141	88.82	0.030037					60	27	3	0	0	0	0.01063	1	21842	21842		65.235	21.377	1	410720			11243	2555	7449	7504	15379	15379					-0.00021089233382554085
LPDGDHDL	8	Unmodified	_LPDGDHDL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENST00000566146.1_1_16:30080209-30080764:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2037658691406	2	441.203607	880.392661	0.3044	0.0001343	0.22554	9.951E-05	0.52994	0.00023381	441.2036261062914	36.02	1.5136	36.02	35.705	37.219	0					158	59	4	0	0	0	0.02459	5	6140	6043;6092;6140;6186;6233		109.63	0	1	1504800			11244	3421	7450	7505	15380;15381;15382;15383;15384	15382					-0.052319443043188585
LPDGDHDL	8	Unmodified	_LPDGDHDL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENST00000566146.1_1_16:30080209-30080764:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.20379638671875	2	441.203607	880.392661	0.064783	2.8583E-05	0.48022	0.00021188	0.54501	0.00024046	441.20371539546136	35.946	1.3556	36.025	35.711	37.067	0.078831					140	54	4	0	0	0	0.016822	4	5963	5918;5963;6008;6056		85.357	0	1	1235600			11245	3421	7450	7505	15385;15386;15387;15388	15386					-0.052319443043188585
LPDGKVIQL	9	Unmodified	_LPDGKVIQL_					0	0	0		ENSG00000184378|ENST00000330368|ACTRT3	ENSG00000184378|ENST00000330368|ACTRT3	ENSG00000184378|ENST00000330368|ACTRT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.8001708984375	2	491.800217	981.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.77	1	54.77	54.27	55.27	0								0	0	0	0.072004	1	11767	11767		41.956	10.687	1				11246	4973	7451	7506	15389	15389					0.09435217482700864
LPDGQVITI	9	Unmodified	_LPDGQVITI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ACTG2|p.E242Q|1|0.26|ENSG00000163017|chr2:73914790-73914790|G/C|missense_variant;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.276611328125	2	478.276575	954.538597	0.21667	0.00010363	-0.10705	-5.1197E-05	0.10962	5.2431E-05	478.2764511469281	68.983	0.88574	68.983	68.558	69.443	0					83	32	4	0	0	0	0.029291	2	16072	16031;16072		51.63	9.7902	1	1296200			11247	827;5239;1566	7452	7507	15390;15391	15391					0.0595093821170849
LPDGQVITI	9	Unmodified	_LPDGQVITI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ACTG2|p.E242Q|1|0.26|ENSG00000163017|chr2:73914790-73914790|G/C|missense_variant;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.27655029296875	2	478.276575	954.538597	-0.019298	-9.2298E-06	0.11257	5.3839E-05	0.093271	4.4609E-05	478.2765658565647	68.86	0.91835	68.922	68.531	69.449	0.062126					95	34	4	0	0	0	0.03918	1	15882	15882		45.7	3.86	1	1361500			11248	827;5239;1566	7452	7507	15392	15392					0.0595093821170849
LPDGTSLTQTF	11	Unmodified	_LPDGTSLTQTF_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2986450195312	2	590.298236	1178.58192	0.49603	0.0002928	0.058205	3.4358E-05	0.55423	0.00032716	590.2982364905092	68.296	0.80359	68.296	67.998	68.802	0					84	28	4	0	0	0	0.013498	2	15929	15929;15977		124.95	88.447	1	1272100			11249	3814	7453	7508	15393;15394	15393					-0.00022916801685823884
LPDGTSLTQTF	11	Unmodified	_LPDGTSLTQTF_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.298583984375	2	590.298236	1178.58192	0.57753	0.00034092	-0.014561	-8.5953E-06	0.56297	0.00033232	590.2982160035609	68.244	0.80378	68.307	68.073	68.876	0.063507					88	30	4	0	0	0	0.019557	2	15753	15753;15805		110.79	74.287	1	1438300			11250	3814	7453	7508	15395;15396	15395					-0.00022916801685823884
LPDGYEFKF	9	Unmodified	_LPDGYEFKF_					0	0	0		ENST00000425542.5_1_22:38072875-38075753:+|nuORF;ENSG00000100097|ENST00000215909|LGALS1;ENST00000472321.1_1_22:38074415-38075753:+|nuORF	ENST00000425542.5_1_22:38072875-38075753:+|nuORF	ENST00000425542.5_1_22:38072875-38075753:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.762939453125	2	558.274032	1114.53351	0.7944	0.00044349	-0.88351	-0.00049324	-0.089108	-4.9747E-05	558.2734786804286	65.661	0.73224	65.661	65.344	66.077	0					37	26	2	0	0	0	0.15482	1	15132	15132		23.79	6.6769	1	292230			11251	1158	7454	7509	15397	15397					-0.019173656509110515
LPDGYEFKF	9	Unmodified	_LPDGYEFKF_					0	0	0		ENST00000425542.5_1_22:38072875-38075753:+|nuORF;ENSG00000100097|ENST00000215909|LGALS1;ENST00000472321.1_1_22:38074415-38075753:+|nuORF	ENST00000425542.5_1_22:38072875-38075753:+|nuORF	ENST00000425542.5_1_22:38072875-38075753:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7632446289062	2	558.274032	1114.53351	0.69962	0.00039058	-0.6329	-0.00035333	0.066712	3.7244E-05	558.2735516930318	65.625	0.68953	65.692	65.422	66.112	0.066872					39	26	2	0	0	0	0.088609	1	14969	14969		34.932	17.819	1	316560			11252	1158	7454	7509	15398	15398					-0.019173656509110515
LPDHINIVL	9	Unmodified	_LPDHINIVL_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.3058471679688	2	517.305667	1032.59678	0.69233	0.00035815	-0.45407	-0.00023489	0.23827	0.00012326	517.3053623310269	67.502	0.72637	67.567	67.32	68.046	0.065071					69	24	5	0	0	0	0.10543	2	15481	15481;15532		31.268	8.4945	1	1198100			11253	2124	7455	7510	15399;15400	15399					0.08178619856971636
LPDIALDVF	9	Unmodified	_LPDIALDVF_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.7792053222656	2	501.778951	1001.54335	0.55655	0.00027927	0.17933	8.9982E-05	0.73588	0.00036925	501.77886299675293	92.623	0.73487	92.623	92.271	93.006	0					78	27	4	0	0	0	0.0064512	3	23294	23244;23294;23344		78.149	23.376	1	1378500			11254	2337;7495	7456	7511	15401;15402;15403	15402					0.04263822354482727
LPDIALDVF	9	Unmodified	_LPDIALDVF_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.7790832519531	2	501.778951	1001.54335	0.54199	0.00027196	-0.0039649	-1.9895E-06	0.53803	0.00026997	501.77883810755173	92.563	0.84547	92.6	92.314	93.159	0.03653					61	31	3	0	0	0	0.028398	3	23125	23072;23125;23173		52.268	23.782	1	1498300			11255	2337;7495	7456	7511	15404;15405;15406	15405					0.04263822354482727
LPDIKVLTL	9	Unmodified	_LPDIKVLTL_					0	0	0		ENST00000472077.1_1_2:27604468-27607956:-|nuORF;ENSG00000115241|ENST00000344034|PPM1G	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.3260498046875	2	506.326068	1010.63758	-0.057701	-2.9215E-05	0.26176	0.00013254	0.20406	0.00010332	506.3261193703557	72.983	0.62646	72.983	72.747	73.373	0					47	21	3	0	0	0	0.010033	2	17301	17301;17355		67.081	7.7124	1	840800			11256	1890	7457	7512	15407;15408	15407					0.13268961176606808
LPDIKVLTL	9	Unmodified	_LPDIKVLTL_					0	0	0		ENST00000472077.1_1_2:27604468-27607956:-|nuORF;ENSG00000115241|ENST00000344034|PPM1G	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.3260803222656	2	506.326068	1010.63758	0.080371	4.0694E-05	0.26426	0.0001338	0.34463	0.0001745	506.32604952542715	72.88	0.54747	72.933	72.718	73.266	0.052574					43	18	4	0	0	0	0.0072857	2	17122	17122;17168		75.571	7.7324	1	707040			11257	1890	7457	7512	15409;15410	15409					0.13268961176606808
LPDITHLRTGL	11	Unmodified	_LPDITHLRTGL_					0	0	0		PIBF1-KLF5|1|fusion;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	PIBF1-KLF5|1|fusion	PIBF1-KLF5|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.5750427246094	3	412.575067	1234.70337	0.10514	4.338E-05	-0.12423	-5.1254E-05	-0.019085	-7.8739E-06	412.5749383518625	58.723	0.98343	58.723	58.293	59.277	0					70	34	4	0	0	0	0.1705	1	12975	12975		34.79	26.039	1	399560			11258	1318	7458	7513	15411	15411					0.0954075035151618
LPDITHLRTGL	11	Unmodified	_LPDITHLRTGL_					0	0	0		PIBF1-KLF5|1|fusion;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5	PIBF1-KLF5|1|fusion	PIBF1-KLF5|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	412.5749206542969	3	412.575067	1234.70337	0.013061	5.3885E-06	-0.24535	-0.00010123	-0.23229	-9.5837E-05	412.57494294082545	58.661	0.67472	58.732	58.366	59.041	0.070477					68	23	4	0	0	0	0.29729	1	12842	12842		18.34	10.394	1	378080			11259	1318	7458	7513	15412	15412					0.0954075035151618
LPDITKDEL	9	Unmodified	_LPDITKDEL_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7505493164062	2	522.284597	1042.55464	0.37522	0.00019597	-0.80404	-0.00041994	-0.42883	-0.00022397	522.284105539388	55.992	0.46981	55.992	55.692	56.162	0					27	16	2	0	0	0	0.16724	1	12144	12144		33.445	4.3633	1	238540			11260	2856	7459	7514	15413	15413					0.03506599657953302
LPDIYPDLL	9	Unmodified	_LPDIYPDLL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7921142578125	2	529.792058	1057.56956	0.35484	0.00018799	-0.15039	-7.9674E-05	0.20445	0.00010832	529.791917052662	88.792	0.58248	88.792	88.537	89.12	0					57	24	3	0	0	0	0.15282	2	22117	22117;22195		24.021	4.7636	1	365920			11261	4202	7460	7515	15414;15415	15414					0.043080915259679387
LPDIYPDLL	9	Unmodified	_LPDIYPDLL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7922973632812	2	529.792058	1057.56956	0.37993	0.00020129	-0.1209	-6.4052E-05	0.25903	0.00013723	529.7919111209471	88.771	0.55	88.803	88.538	89.088	0.032265					57	23	3	0	0	0	0.0569	1	21954	21954		41.84	5.7126	1	346430			11262	4202	7460	7515	15416	15416					0.043080915259679387
LPDKSIASL	9	Unmodified	_LPDKSIASL_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2765197753906	2	472.276575	942.538597	0.075233	3.5531E-05	-0.091628	-4.3274E-05	-0.016395	-7.7431E-06	472.27648687886847	48.06	1.2696	48.06	47.735	49.004	0					116	43	4	0	0	0	0.0016755	4	9710	9665;9710;9762;9806		117.76	10.82	1	3158000			11263	1039	7461	7516	15417;15418;15419;15420	15418					0.06502938211713172
LPDKSIASL	9	Unmodified	_LPDKSIASL_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2764587402344	2	472.276575	942.538597	0.2079	9.8187E-05	-0.19237	-9.0852E-05	0.015529	7.3342E-06	472.2764334898191	47.976	1.0869	48.056	47.726	48.813	0.080029					104	37	4	0	0	0	0.0028522	5	9559	9513;9559;9605;9648;9696		110.55	10.797	1	2565900			11264	1039	7461	7516	15421;15422;15423;15424;15425	15422					0.06502938211713172
LPDKTIASL	9	Unmodified	_LPDKTIASL_					0	0	0		nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.28436279296875	2	479.2844	956.554247	-0.074225	-3.5575E-05	0.16162	7.7463E-05	0.087397	4.1888E-05	479.28436725238646	49.235	0.9884	49.235	48.888	49.876	0					97	34	5	0	0	0	0.0042454	3	10092	10045;10092;10136		100.71	25.138	1	1172200			11265	2013	7462	7517	15426;15427;15428	15427					0.0742322472875685
LPDKTIASL	9	Unmodified	_LPDKTIASL_					0	0	0		nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2843322753906	2	479.2844	956.554247	-0.16016	-7.6761E-05	0.37755	0.00018095	0.21739	0.00010419	479.2844479289534	49.137	0.87642	49.214	48.872	49.749	0.076607					85	31	4	0	0	0	0.0045978	2	9945	9893;9945		87.258	14.29	1	929040			11266	2013	7462	7517	15429;15430	15430					0.0742322472875685
LPDKVAPTV	9	Unmodified	_LPDKVAPTV_					0	0	0			REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2789306640625	2	470.279118	938.543683	0.023038	1.0834E-05	-0.36007	-0.00016933	-0.33703	-0.0001585	470.27897779076363	52.027	0.33187	52.027	51.83	52.162	0					19	11	2	0	0	0	0.20162	1	10938	10938		18.373	0	1	71916	+		11267	9327	7463	7518	15431	15431					0.0719524207432869
LPDKVAPTV	9	Unmodified	_LPDKVAPTV_					0	0	0			REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.27886962890625	2	470.279118	938.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.912	1	51.979	51.479	52.479	0.067173								0	0	0	0.24291	1	10759	10759		10.8	0	1		+		11268	9327	7463	7518	15432	15432					0.0719524207432869
LPDKVAPTV	9	Unmodified	_LPDKVAPTV_					0	0	0			REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2685241699219	2	470.279118	938.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.024	1	52.091	51.591	52.591	0.067173								0	0	0	0.24291	1	10793	10793		10.8	0	1		+		11269	9327	7463	7518	15433	15433					0.0719524207432869
LPDKWQHDL	9	Unmodified	_LPDKWQHDL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2955322265625	2	576.29583	1150.57711	-0.33746	-0.00019447	0.58183	0.00033531	0.24438	0.00014083	576.296348681467	42.705	0.57597	42.705	42.454	43.03	0					36	19	3	0	0	0	0.21723	1	8097	8097		16.566	6.4919	1	77339			11270	4933	7464	7519	15434	15434					0.007842438462375867
LPDKWQHDL	9	Unmodified	_LPDKWQHDL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2960815429688	2	576.29583	1150.57711	-0.1823	-0.00010506	0.61288	0.0003532	0.43058	0.00024814	576.2963640469413	42.558	0.48743	42.648	42.492	42.98	0.089764					29	18	3	0	0	0	0.11936	1	7954	7954		28.234	15.993	1	81650			11271	4933	7464	7519	15435	15435					0.007842438462375867
LPDKWQHDLF	10	Unmodified	_LPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.5557861328125	3	433.555784	1297.64552	0.5176	0.00022441	-0.52707	-0.00022851	-0.009467	-4.1045E-06	433.5556006325362	55.918	1.1652	55.918	55.72	56.885	0					63	42	2	0	0	0	0.057907	2	12106	12106;12153		55.467	39.929	1	1458900			11272	4933	7465	7520	15436;15437	15436					0.008604884260876133
LPDKWQHDLF	10	Unmodified	_LPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.55572509765625	3	433.555784	1297.64552	0.14675	6.3622E-05	-0.2756	-0.00011949	-0.12886	-5.5868E-05	433.5556637430126	55.867	0.86563	55.932	55.704	56.569	0.065128					74	32	4	0	0	0	0.15791	2	11951	11951;11994		38.559	21.116	1	1459500			11273	4933	7465	7520	15438;15439	15438					0.008604884260876133
LPDKYNLTI	9	Unmodified	_LPDKYNLTI_					0	0	0			REV__ENSG00000100225|ENST00000266087|FBXO7	REV__ENSG00000100225|ENST00000266087|FBXO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.80322265625	2	538.802957	1075.59136	0.22463	0.00012103	-0.73606	-0.00039659	-0.51143	-0.00027556	538.8022978629461	50.954	0.735	50.954	50.651	51.386	0					40	24	2	0	0	0	0.28919	1	10645	10645		8.1555	0	1	120030	+		11274	8374	7466	7521	15440	15440					0.05658896274530889
LPDLAISIDS	10	Unmodified	_LPDLAISIDS_					0	0	0			REV__ENST00000585105.5_1_17:73489877-73495164:+|nuORF	REV__ENST00000585105.5_1_17:73489877-73495164:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7508544921875	2	522.284597	1042.55464	0.22072	0.00011528	-0.61137	-0.00031931	-0.39065	-0.00020403	522.2841694699151	55.936	0.43844	56.001	55.704	56.142	0.065128					26	15	2	0	0	0	0.30896	1	11937	11937		18.146	1.9972	1	130630	+		11275	10435	7467	7522	15441	15441					0.035065996579760395
LPDLEELFL	9	Unmodified	_LPDLEELFL_					0	0	0		ENST00000533134.1_1_11:120924418-120928239:+|nuORF;ENSG00000154114|ENST00000683345|TBCEL	ENST00000533134.1_1_11:120924418-120928239:+|nuORF	ENST00000533134.1_1_11:120924418-120928239:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7979125976562	2	544.79734	1087.58013	0.22331	0.00012166	0.49192	0.00026799	0.71522	0.00038965	544.7976153777117	103.37	0.23149	103.37	103.22	103.45	0					36	17	3	0	0	0	0.23216	2	26579	26534;26579		14.838	7.2892	1	97406			11276	3545	7468	7523	15442;15443	15443					0.03984074180380048
LPDLEELFL	9	Unmodified	_LPDLEELFL_					0	0	0		ENST00000533134.1_1_11:120924418-120928239:+|nuORF;ENSG00000154114|ENST00000683345|TBCEL	ENST00000533134.1_1_11:120924418-120928239:+|nuORF	ENST00000533134.1_1_11:120924418-120928239:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.79736328125	2	544.79734	1087.58013	0.41191	0.00022441	-0.041809	-2.2778E-05	0.3701	0.00020163	544.7973883054801	103.34	0.27142	103.38	103.2	103.47	0.03791					44	28	2	0	0	0	0.23216	2	26391	26358;26391		14.838	7.2892	1	86292			11277	3545	7468	7523	15444;15445	15445					0.03984074180380048
LPDLEGRTHIF	11	Unmodified	_LPDLEGRTHIF_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.2347106933594	3	433.234822	1296.68264	0.40245	0.00017436	-0.75765	-0.00032824	-0.3552	-0.00015389	433.2344715120352	56.364	1.4529	56.364	56.116	57.569	0					129	53	5	0	0	0	0.10986	2	12233	12233;12280		44.207	18.086	1	2330700			11278	3791	7469	7524	15446;15447	15446					0.0461615997185163
LPDLEGRTHIF	11	Unmodified	_LPDLEGRTHIF_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.23468017578125	3	433.234822	1296.68264	0.051513	2.2317E-05	-0.2988	-0.00012945	-0.24729	-0.00010714	433.23460948661034	56.298	0.9225	56.364	56.144	57.066	0.066452					102	34	5	0	0	0	0.15656	3	12115	12069;12115;12159		36.955	14.846	1	2020000			11279	3791	7469	7524	15448;15449;15450	15449					0.0461615997185163
LPDLERLL	8	Unmodified	_LPDLERLL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7928466796875	2	484.792392	967.570232	-0.11742	-5.6925E-05	0.32838	0.0001592	0.21096	0.00010227	484.7923451116459	73.868	0.46518	73.868	73.541	74.006	0					22	15	2	0	0	0	0.52902	1	17606	17606		8.7454	0	1	91142			11280	1940	7470	7525	15451	15451					0.08514930965668555
LPDLERLL	8	Unmodified	_LPDLERLL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.79248046875	2	484.792392	967.570232	0.10963	5.3149E-05	0.37973	0.00018409	0.48936	0.00023724	484.7926042029819	73.885	0.37134	73.934	73.617	73.988	0.048538					19	13	2	0	0	0	0.40052	1	17420	17420		26.268	2.2476	1	147420			11281	1940	7470	7525	15452	15452					0.08514930965668555
LPDLIKEVL	9	Unmodified	_LPDLIKEVL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3236083984375	2	520.323525	1038.6325	0.38581	0.00020075	-0.14216	-7.3968E-05	0.24365	0.00012678	520.3234355428541	76.028	0.75533	76.028	75.627	76.383	0					80	48	2	0	0	0	0.10802	1	18271	18271		30.703	6.6829	1	1234700			11282	5362	7471	7526	15453	15453					0.11472657313993295
LPDLLIFQM	9	Oxidation (M)	_LPDLLIFQM(Oxidation (M))_		LPDLLIFQM(1)		LPDLLIFQM(59)	0	0	1		ENST00000489907.2_1_1:156236170-156237375:-|nuORF;ENSG00000198952|ENST00000361813|SMG5	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7922973632812	2	553.301736	1104.58892	0.55856	0.00030905	0.4857	0.00026874	1.0443	0.00057779	553.3018599060538	91.561	0.3889	91.561	91.319	91.707	0					29	14	3	0	0	0	0.01943	1	22968	22968		58.679	38.225	1	234720			11283	5435	7472	7527	15454	15454		308			0.040807245452015195
LPDLLIFQM	9	Oxidation (M)	_LPDLLIFQM(Oxidation (M))_		LPDLLIFQM(1)		LPDLLIFQM(50)	0	0	1		ENST00000489907.2_1_1:156236170-156237375:-|nuORF;ENSG00000198952|ENST00000361813|SMG5	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3021240234375	2	553.301736	1104.58892	0.56351	0.00031179	0.092833	5.1365E-05	0.65634	0.00036315	553.3017742084636	93.995	1.0967	93.995	93.77	94.866	0					100	51	3	0	0	0	0.031665	3	23693	23693;23738;23785		49.933	36.425	1	429700			11284	5435	7472	7527	15455;15456;15457	15455		308			0.040807245452015195
LPDLLIFQM	9	Oxidation (M)	_LPDLLIFQM(Oxidation (M))_		LPDLLIFQM(1)		LPDLLIFQM(50)	0	0	1		ENST00000489907.2_1_1:156236170-156237375:-|nuORF;ENSG00000198952|ENST00000361813|SMG5	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8036499023438	2	553.301736	1104.58892	0.57404	0.00031762	0.063155	3.4944E-05	0.6372	0.00035256	553.8032164359056	93.957	1.3067	93.995	93.512	94.818	0.038086					100	57	2	0	0	0	0.031665	3	23544	23544;23592;23638		49.933	36.425	1	511170			11285	5435	7472	7527	15458;15459;15460	15458		308			0.040807245452015195
LPDLLIFQM	9	Oxidation (M)	_LPDLLIFQM(Oxidation (M))_		LPDLLIFQM(1)		LPDLLIFQM(59)	0	0	1		ENST00000489907.2_1_1:156236170-156237375:-|nuORF;ENSG00000198952|ENST00000361813|SMG5	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7926025390625	2	553.301736	1104.58892	0.45838	0.00025362	0.64451	0.00035661	1.1029	0.00061023	553.3020556023508	91.593	0.43822	91.628	91.334	91.773	0.035446					31	15	3	0	0	0	0.055474	1	22822	22822		58.679	39.24	1	214300			11286	5435	7472	7527	15461	15461		308			0.040807245452015195
LPDLLIFQM	9	Unmodified	_LPDLLIFQM_					0	0	0		ENST00000489907.2_1_1:156236170-156237375:-|nuORF;ENSG00000198952|ENST00000361813|SMG5	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3036499023438	2	545.304278	1088.594	0.28559	0.00015573	0.28225	0.00015391	0.56784	0.00030964	545.3041150396139	102.44	0.40547	102.44	102.3	102.71	0					59	27	3	0	0	0	0.15282	2	26268	26268;26306		24.021	15.427	1	178090			11287	5435	7472	7528	15462;15463	15462					0.05325028407833088
LPDLLIFQM	9	Unmodified	_LPDLLIFQM_					0	0	0		ENST00000489907.2_1_1:156236170-156237375:-|nuORF;ENSG00000198952|ENST00000361813|SMG5	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENST00000489907.2_1_1:156236170-156237375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.303955078125	2	545.304278	1088.594	0.4295	0.00023421	0.57456	0.00031331	1.0041	0.00054752	545.3039828267118	102.41	0.38307	102.45	102.26	102.64	0.040916					67	26	4	0	0	0	0.20358	2	26127	26084;26127		18.146	13.39	1	148440			11288	5435	7472	7528	15464;15465	15465					0.05325028407833088
LPDLLLLLH	9	Unmodified	_LPDLLLLLH_					0	0	0			REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037109375	2	523.83406	1045.65357	0.5652	0.00029607	0.3186	0.00016689	0.8838	0.00046296	523.8340830800781	85.333	0.50912	85.356	85.183	85.693	0.023125					47	20	3	0	0	0	0.17491	1	20898	20898		21.747	0	1	282860	+		11289	11375	7473	7529	15466	15466					0.13256667413520518
LPDLLLLLH	9	Unmodified	_LPDLLLLLH_					0	0	0			REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	523.83406	1045.65357	0.53593	0.00028074	0.32354	0.00016948	0.85947	0.00045022	523.8341353898468	85.375	0.27001	85.375	85.189	85.459	0	0.0094551	2.6056E-06	NaN	21.747	25	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380380	+		11290	11375	7473	7529							0.13256667413520518
LPDLSHLTE	9	Unmodified	_LPDLSHLTE_					0	0	0		nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1	nc|ENSG00000079841|Q86UR5-2|RIMS1	nc|ENSG00000079841|Q86UR5-2|RIMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7699584960938	2	512.769114	1023.52368	0.59556	0.00030538	1.3402	0.00068722	1.9358	0.0009926	512.7698156617922	92.625	0.60468	92.625	92.351	92.956	0					37	22	2	0	0	0	0.14091	1	23310	23310		25.399	1.1894	1	221900			11291	886	7474	7530	15467	15467					0.012854463437065533
LPDLSHLTE	9	Unmodified	_LPDLSHLTE_					0	0	0		nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1	nc|ENSG00000079841|Q86UR5-2|RIMS1	nc|ENSG00000079841|Q86UR5-2|RIMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7698364257812	2	512.769114	1023.52368	0.564	0.0002892	1.6356	0.0008387	2.1996	0.0011279	512.7699939889304	92.58	0.6049	92.616	92.286	92.891	0.03653					47	21	3	0	0	0	0.14091	1	23095	23095		25.399	1.1894	1	278010			11292	886	7474	7530	15468	15468					0.012854463437065533
LPDLSRFTL	9	Unmodified	_LPDLSRFTL_					0	0	0		MADD|p.P287L|1|0.26|ENSG00000110514|chr11:47276099-47276099|C/T|missense_variant	MADD|p.P287L|1|0.26|ENSG00000110514|chr11:47276099-47276099|C/T|missense_variant	MADD|p.P287L|1|0.26|ENSG00000110514|chr11:47276099-47276099|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.30419921875	2	531.303124	1060.5917	0.54316	0.00028858	0.25057	0.00013313	0.79373	0.00042171	531.3032982744915	69.587	0.54718	69.587	69.443	69.991	0					34	18	3	0	0	0	0.03472	1	16284	16284		47.749	2.0491	1	432050			11293	7425	7475	7531	15469	15469					0.06382315994369492
LPDLTKVIQL	10	Unmodified	_LPDLTKVIQL_					0	0	0		DNAJC3-FOXN3|1|fusion;DNAJC3-FOXN3|2|fusion;ENSG00000102580|ENST00000602402|DNAJC3	DNAJC3-FOXN3|1|fusion	DNAJC3-FOXN3|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.759765625	2	570.355357	1138.69616	0.59458	0.00033912	-1.6459	-0.00093873	-1.0513	-0.00059961	570.3541027436619	79.807	0.62373	79.807	79.398	80.022	0					52	21	4	0	0	0	0.3142	1	19404	19404		17.443	2.1942	1	172660			11294	293	7476	7532	15470	15470					0.13236017751091822
LPDLTKVIQL	10	Unmodified	_LPDLTKVIQL_					0	0	0		DNAJC3-FOXN3|1|fusion;DNAJC3-FOXN3|2|fusion;ENSG00000102580|ENST00000602402|DNAJC3	DNAJC3-FOXN3|1|fusion	DNAJC3-FOXN3|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7597045898438	2	570.355357	1138.69616	0.33748	0.00019249	-1.5469	-0.00088229	-1.2094	-0.0006898	570.3543223654191	79.795	0.61447	79.821	79.464	80.078	0.026428					49	21	3	0	0	0	0.29789	1	19230	19230		18.373	3.1246	1	158290			11295	293	7476	7532	15471	15471					0.13236017751091822
LPDLVVEIL	9	Unmodified	_LPDLVVEIL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.8099365234375	2	505.810251	1009.60595	0.31007	0.00015684	-0.2966	-0.00015002	0.013472	6.8144E-06	505.8100023004122	96.591	0.54909	96.591	96.359	96.908	0					53	24	3	0	0	0	0.10833	3	24466	24466;24515;24558		30.637	14.789	1	419010			11296	2122	7477	7533	15472;15473;15474	15472					0.1015296842265343
LPDLVVEIL	9	Unmodified	_LPDLVVEIL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.81005859375	2	505.810251	1009.60595	0.35902	0.0001816	-0.44299	-0.00022407	-0.083971	-4.2473E-05	505.81004525908617	96.536	0.55128	96.576	96.305	96.857	0.039764					73	29	4	0	0	0	0.10833	3	24290	24290;24333;24385		30.637	14.789	1	625020			11297	2122	7477	7533	15475;15476;15477	15475					0.1015296842265343
LPDLVVEIL	9	Unmodified	_LPDLVVEIL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.8109436035156	2	505.810251	1009.60595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.839	1	96.879	96.379	97.379	0.039772								0	0	0	0.19239	1	24430	24430		19.257	8.4331	1				11298	2122	7477	7533	15478	15478					0.1015296842265343
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(160)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7678833007812	2	513.76806	1025.52157	0.21819	0.0001121	-0.41086	-0.00021109	-0.19267	-9.899E-05	513.7678008387682	50.668	0.78143	50.668	50.514	51.295	0					80	26	4	0	0	0	6.8107E-09	1	10532	10532		164.52	59.716	1	2438700			11299	1413	7478	7534	15479	15479		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(160)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7681274414062	2	513.76806	1025.52157	0.25906	0.00013309	-0.18822	-9.6701E-05	0.070836	3.6394E-05	513.7680361474798	52.667	3.3297	52.667	51.208	54.538	0					380	123	5	0	0	0	6.8107E-09	13	11121	10969;10995;11038;11079;11121;11166;11205;11248;11297;11342;11388;11434;11484		164.52	46.916	1	2869500			11300	1413	7478	7534	15480;15481;15482;15483;15484;15485;15486;15487;15488;15489;15490;15491;15492	15484		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(120)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7680053710938	2	513.76806	1025.52157	0.22713	0.00011669	-0.58245	-0.00029924	-0.35532	-0.00018255	513.767800561739	50.368	0.91264	50.368	49.85	50.762	0					64	21	4	0	0	0	3.1113E-07	1	10489	10489		123.45	41.838	1	2151700			11301	1413	7478	7534	15493	15493		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(160)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7679443359375	2	513.76806	1025.52157	0.31169	0.00016014	-0.37035	-0.00019027	-0.058659	-3.0137E-05	513.7677620575793	50.602	0.86222	50.675	50.5	51.362	0.07312					88	32	4	0	0	0	6.8107E-09	2	10368	10368;10415		164.52	59.716	1	1955700			11302	1413	7478	7534	15494;15495	15494		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(140)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7681274414062	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.442	1	52.509	52.009	53.009	0.067173								0	0	0	1.3858E-13	1	10921	10921		136.33	43.511	1				11303	1413	7478	7534	15496	15496		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(130)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7681274414062	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.614	1	52.681	52.181	53.181	0.067173								0	0	0	2.6638E-13	1	10972	10972		128.37	43.009	1				11304	1413	7478	7534	15497	15497		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(140)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7682495117188	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.745	1	52.812	52.312	53.312	0.067173								0	0	0	1.3858E-13	1	11012	11012		136.33	43.511	1				11305	1413	7478	7534	15498	15498		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(120)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7681274414062	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.879	1	52.945	52.445	53.445	0.06543								0	0	0	3.8994E-09	1	11053	11053		123.45	41.838	1				11306	1413	7478	7534	15499	15499		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(100)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7681274414062	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.134	1	53.2	52.7	53.7	0.06543								0	0	0	3.2051E-05	1	11131	11131		99.799	35.563	1				11307	1413	7478	7534	15500	15500		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(85)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.76806640625	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.337	1	53.402	52.902	53.902	0.06543								0	0	0	0.0012647	1	11192	11192		85.272	21.036	1				11308	1413	7478	7534	15501	15501		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(65)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.76806640625	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.507	1	53.573	53.073	54.073	0.06543								0	0	0	0.015548	1	11245	11245		65.235	19.214	1				11309	1413	7478	7534	15502	15502		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(65)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7681884765625	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.675	1	53.74	53.24	54.24	0.06543								0	0	0	0.015548	1	11296	11296		65.235	19.214	1				11310	1413	7478	7534	15503	15503		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(42)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7682495117188	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.002	1	54.067	53.567	54.567	0.065128								0	0	0	0.072376	1	11396	11396		41.84	16.44	1				11311	1413	7478	7534	15504	15504		87			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(110)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7677001953125	2	513.76806	1025.52157	0.31319	0.00016091	-0.39781	-0.00020438	-0.084611	-4.3471E-05	513.7678599384157	50.274	1.071	50.347	49.868	50.939	0.07312					68	23	4	0	0	0	0.0002706	1	10280	10280		111.29	40.153	1	1769700			11312	1413	7478	7534	15505	15505		87			0.009826943342659433
LPDMVVSHL	9	Unmodified	_LPDMVVSHL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7705993652344	2	505.770603	1009.52665	0.35824	0.00018119	-0.50811	-0.00025699	-0.14987	-7.5802E-05	505.7702878263037	60.571	1.0258	60.571	60.335	61.361	0					92	36	4	0	0	0	0.00022088	3	13549	13498;13549;13600		136.33	85.478	1	1439400			11313	1413	7478	7535	15506;15507;15508	15507					0.02226998196886143
LPDMVVSHL	9	Unmodified	_LPDMVVSHL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7705078125	2	505.770603	1009.52665	0.16058	8.1214E-05	-0.19773	-0.00010001	-0.037158	-1.8794E-05	505.7704425091223	60.512	1.064	60.585	60.263	61.327	0.073421					64	36	2	0	0	0	0.00022088	5	13386	13338;13386;13434;13447;13528		136.33	81.56	1	1303800			11314	1413	7478	7535	15509;15510;15511;15512;15513	15510					0.02226998196886143
LPDNVHYVF	9	Unmodified	_LPDNVHYVF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2799682617188	2	552.279649	1102.54475	0.038404	2.121E-05	0.11247	6.2115E-05	0.15087	8.3325E-05	552.2798281464273	58.906	0.38593	58.906	58.652	59.038	0					20	13	2	0	0	0	0.18398	1	13024	13024		20.415	0.97554	1	160320			11315	531	7479	7536	15514	15514					-0.0024254355676021078
LPDNVHYVF	9	Unmodified	_LPDNVHYVF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	552.279649	1102.54475	0.038404	2.121E-05	0.11247	6.2115E-05	0.15087	8.3325E-05	552.2798281464273	58.906	0.38593	58.906	58.652	59.038	0	0.021924	6.685E-06	NaN	20.415	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160320			11316	531	7479	7536							-0.0024254355676021078
LPDNVHYVF	9	Unmodified	_LPDNVHYVF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.279649	1102.54475	0.36149	0.00019964	0.091305	5.0426E-05	0.45279	0.00025007	552.2796869221562	58.791	0.47954	58.862	58.561	59.041	0.070477	-0.021924	-1.6693E-05	NaN	20.415	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117180			11317	531	7479	7536							-0.0024254355676021078
LPDPAPSIPR	10	Unmodified	_LPDPAPSIPR_					0	0	0			REV__ENST00000551650.1_1_12:104238130-104238388:+|nuORF	REV__ENST00000551650.1_1_12:104238130-104238388:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8004760742188	2	531.800749	1061.58694	-0.11336	-6.0283E-05	-0.089926	-4.7823E-05	-0.20328	-0.00010811	531.8005166668876	44.098	0.96822	44.098	43.638	44.606	0					71	33	3	0	0	0	0.30966	1	8491	8491		21.537	1.1224	1	221580	+		11318	12438	7480	7537	15515	15515					0.058614318515992636
LPDPFAKIVV	10	Unmodified	_LPDPFAKIVV_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.25927734375	2	549.831517	1097.64848	0.31946	0.00017565	0.024188	1.3299E-05	0.34365	0.00018895	549.8314817772908	74.108	0.72908	74.108	73.798	74.527	0					60	26	3	0	0	0	0.26541	1	17706	17706		30.703	12.33	1	810460			11319	5396	7481	7538	15516	15516					0.10356363550909009
LPDPFAKIVV	10	Unmodified	_LPDPFAKIVV_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8319091796875	2	549.831517	1097.64848	0.53533	0.00029434	-0.2362	-0.00012987	0.29913	0.00016447	549.8312991272475	74.042	0.81561	74.091	73.778	74.593	0.048546					64	29	3	0	0	0	0.18348	1	17478	17478		35.612	17.239	1	536740			11320	5396	7481	7538	15517	15517					0.10356363550909009
LPDPFTPNL	9	Unmodified	_LPDPFTPNL_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.26885986328125	2	507.26875	1012.52295	0.19399	9.8403E-05	0.20873	0.00010588	0.40271	0.00020428	507.268756563838	78.677	0.67998	78.677	78.335	79.015	0					58	23	4	0	0	0	0.017478	2	19058	19013;19058		60.074	12.325	1	658550			11321	2281	7482	7539	15518;15519	15519					0.01718651694648088
LPDPFTPNL	9	Unmodified	_LPDPFTPNL_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.26904296875	2	507.26875	1012.52295	0.33636	0.00017062	-0.037033	-1.8786E-05	0.29932	0.00015184	507.2686536380077	78.571	0.61564	78.601	78.374	78.99	0.030159					54	21	4	0	0	0	0.026209	2	18852	18852;18900		53.833	18.844	1	878360			11322	2281	7482	7539	15520;15521	15520					0.01718651694648088
LPDPGFQKI	9	Unmodified	_LPDPGFQKI_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.30206298828125	2	507.784567	1013.55458	0.1339	6.7995E-05	0.25872	0.00013138	0.39263	0.00019937	507.7844626353584	52.787	0.44473	52.787	52.616	53.06	0					35	15	3	0	0	0	0.19307	1	11149	11149		19.362	3.5148	1	124970			11323	634	7483	7540	15522	15522					0.04834644448601466
LPDPGFQKI	9	Unmodified	_LPDPGFQKI_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.3022155761719	2	507.784567	1013.55458	0.29629	0.00015045	0.28195	0.00014317	0.57824	0.00029362	507.7845710097362	52.784	0.46471	52.851	52.665	53.13	0.067169					27	19	2	0	0	0	0.2546	2	11002	11002;11056		12.241	4.7715	1	101730			11324	634	7483	7540	15523;15524	15523					0.04834644448601466
LPDPGSPRL	9	Unmodified	_LPDPGSPRL_					0	0	0		ENSG00000188522|ENST00000388995|FAM83G	ENSG00000188522|ENST00000388995|FAM83G	ENSG00000188522|ENST00000388995|FAM83G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.266357421875	2	476.266542	950.51853	-0.47282	-0.00022519	0.16891	8.0445E-05	-0.30391	-0.00014474	476.2665518136273	45.441	1.0003	45.441	45.126	46.126	0					83	34	4	0	0	0	0.0089808	3	8943	8898;8943;8984		70.332	24.311	1	1109500			11325	5159	7484	7541	15525;15526;15527	15526					0.04129187271757928
LPDPGSPRL	9	Unmodified	_LPDPGSPRL_					0	0	0		ENSG00000188522|ENST00000388995|FAM83G	ENSG00000188522|ENST00000388995|FAM83G	ENSG00000188522|ENST00000388995|FAM83G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2664794921875	2	476.266542	950.51853	-0.23096	-0.00011	0.17275	8.2273E-05	-0.058217	-2.7727E-05	476.26654411278787	45.345	0.90931	45.433	45.148	46.057	0.08754					84	35	4	0	0	0	0.0097877	3	8790	8743;8790;8837		67.838	21.817	1	1024600			11326	5159	7484	7541	15528;15529;15530	15529					0.04129187271757928
LPDPIIIHL	9	Unmodified	_LPDPIIIHL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8184814453125	2	515.81841	1029.62227	0.46928	0.00024206	-0.089309	-4.6067E-05	0.37997	0.000196	515.8182757505048	75.489	0.52818	75.489	75.268	75.797	0					50	21	4	0	0	0	0.0017019	2	18092	18049;18092		117.6	54.036	1	1422700			11327	2579	7485	7542	15531;15532	15532					0.10864094379417111
LPDPIIIHL	9	Unmodified	_LPDPIIIHL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8182373046875	2	515.81841	1029.62227	0.40919	0.00021107	-0.0036918	-1.9043E-06	0.4055	0.00020917	515.8182908501916	75.446	0.46987	75.49	75.266	75.736	0.044037					47	17	4	0	0	0	0.0037915	2	17883	17883;17929		104.8	60.392	1	1191000			11328	2579	7485	7542	15533;15534	15533					0.10864094379417111
LPDPKAVSL	9	Unmodified	_LPDPKAVSL_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463283-61463367:-|nuORF	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2684326171875	2	470.279118	938.543683	0.023038	1.0834E-05	-0.36007	-0.00016933	-0.33703	-0.0001585	470.27897779076363	52.027	0.33187	52.027	51.83	52.162	0					19	11	2	0	0	0	0.24273	1	10956	10956		13.615	2.8154	1	71916			11329	1905	7486	7543	15535	15535					0.07195242074340058
LPDPQNISL	9	Unmodified	_LPDPQNISL_					0	0	0		ENSG00000198860|ENST00000645668|TSEN15;ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF	ENSG00000198860|ENST00000645668|TSEN15	ENSG00000198860|ENST00000645668|TSEN15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.771728515625	2	498.771657	995.528761	0.58306	0.00029081	0.30946	0.00015435	0.89252	0.00044516	498.7717325093774	67.377	1.0021	67.377	67.068	68.07	0					78	38	3	0	0	0	0.071704	1	15588	15588		38.615	0.64075	1	1024400			11330	5421	7487	7544	15536	15536					0.030817502063428037
LPDPQNISL	9	Unmodified	_LPDPQNISL_					0	0	0		ENSG00000198860|ENST00000645668|TSEN15;ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF	ENSG00000198860|ENST00000645668|TSEN15	ENSG00000198860|ENST00000645668|TSEN15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7718505859375	2	498.771657	995.528761	0.76766	0.00038289	0.01035	5.1625E-06	0.77801	0.00038805	498.77162909626134	67.31	0.97335	67.375	67.101	68.074	0.065071					73	33	4	0	0	0	0.071704	1	15427	15427		38.615	0.64075	1	1177100			11331	5421	7487	7544	15537	15537					0.030817502063428037
LPDPRELIEI	10	Unmodified	_LPDPRELIEI_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8400268554688	2	597.840071	1193.66559	0.21064	0.00012593	-0.011536	-6.8967E-06	0.19911	0.00011903	597.8401129131925	78.705	1.2089	78.705	78.073	79.282	0					109	41	3	0	0	0	0.018369	4	19074	18972;19024;19074;19127		69.338	21.711	1	1128400			11332	1569	7488	7545	15538;15539;15540;15541	15540					0.07650239366034839
LPDPRELIEI	10	Unmodified	_LPDPRELIEI_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8404541015625	2	597.840071	1193.66559	0.24688	0.00014759	-0.060162	-3.5967E-05	0.18671	0.00011163	597.8400971090493	78.74	1.2542	78.77	78.138	79.392	0.030159					106	43	3	0	0	0	0.037458	5	18899	18785;18796;18850;18899;18953		61.09	17.108	1	1179300			11333	1569	7488	7545	15542;15543;15544;15545;15546	15545					0.07650239366034839
LPDPRSRH	8	Unmodified	_LPDPRSRH_					0	0	0		ENST00000375446.4_1_9:95884160-95884508:-|nuORF	ENST00000375446.4_1_9:95884160-95884508:-|nuORF	ENST00000375446.4_1_9:95884160-95884508:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.267822265625	2	489.267407	976.520262	0.38779	0.00018973	0.011974	5.8583E-06	0.39976	0.00019559	489.2673769721882	68.993	0.5152	68.993	68.617	69.132	0					33	19	2	0	0	0	0.46914	1	16049	16049		16.942	16.942	1	259470			11334	6241	7489	7546	15547	15547					0.031062410803770035
LPDPRSRH	8	Unmodified	_LPDPRSRH_					0	0	0		ENST00000375446.4_1_9:95884160-95884508:-|nuORF	ENST00000375446.4_1_9:95884160-95884508:-|nuORF	ENST00000375446.4_1_9:95884160-95884508:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2677307128906	2	489.267407	976.520262	0.16113	7.8835E-05	0.67556	0.00033053	0.83669	0.00040937	489.2676682693809	68.966	0.55521	69.028	68.587	69.142	0.062119					32	20	2	0	0	0	0.40691	1	15875	15875		25.399	0	1	214910			11335	6241	7489	7546	15548	15548					0.031062410803770035
LPDPRSRH	8	Unmodified	_LPDPRSRH_					0	0	0		ENST00000375446.4_1_9:95884160-95884508:-|nuORF	ENST00000375446.4_1_9:95884160-95884508:-|nuORF	ENST00000375446.4_1_9:95884160-95884508:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	489.267407	976.520262	0.38779	0.00018973	0.011974	5.8583E-06	0.39976	0.00019559	489.2673769721882	68.993	0.5152	68.993	68.617	69.132	0	-0.017805	-0.00022527	NaN	25.399	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259470			11336	6241	7489	7546							0.031062410803770035
LPDQAFFVL	9	Unmodified	_LPDQAFFVL_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-4|IL33;nc|ENSG00000137033|O95760-2|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.287109375	2	525.286943	1048.55933	0.36928	0.00019398	-0.038728	-2.0343E-05	0.33055	0.00017364	525.2868799090535	91.348	0.9865	91.348	90.911	91.897	0					79	35	4	0	0	0	0.17428	1	22911	22911		21.537	2.098	1	1379100			11337	2826	7490	7547	15549	15549					0.03699528591369017
LPDQAFFVL	9	Unmodified	_LPDQAFFVL_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-4|IL33;nc|ENSG00000137033|O95760-2|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2871704101562	2	525.286943	1048.55933	0.080414	4.2241E-05	0.32382	0.0001701	0.40423	0.00021234	525.287092300086	91.264	0.99693	91.299	90.994	91.991	0.035446					74	35	4	0	0	0	0.12214	1	22740	22740		27.629	10.687	1	1263200			11338	2826	7490	7547	15550	15550					0.03699528591369017
LPDQDEMDL	9	Oxidation (M)	_LPDQDEM(Oxidation (M))DL_		LPDQDEM(1)DL		LPDQDEM(48)DL	0	0	1		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2318725585938	2	546.231704	1090.44886	0.41256	0.00022536	-0.18288	-9.9897E-05	0.22968	0.00012546	546.2316318371926	47.648	0.85936	47.648	47.263	48.123	0					63	29	3	0	0	0	0.034744	1	9566	9566		47.732	18.65	1	295690			11339	5730	7491	7548	15551	15551		322			-0.09275104249832111
LPDQDEMDL	9	Oxidation (M)	_LPDQDEM(Oxidation (M))DL_		LPDQDEM(1)DL		LPDQDEM(40)DL	0	0	1		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2316284179688	2	546.231704	1090.44886	0.2013	0.00010996	-0.0084567	-4.6193E-06	0.19285	0.00010534	546.2317493647392	50.639	1.7189	50.639	50.024	51.743	0					125	59	3	0	0	0	0.064247	1	10520	10520		40.239	17.503	1	222450			11340	5730	7491	7548	15552	15552		322			-0.09275104249832111
LPDQDEMDL	9	Oxidation (M)	_LPDQDEM(Oxidation (M))DL_		LPDQDEM(1)DL		LPDQDEM(48)DL	0	0	1		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2318115234375	2	546.231704	1090.44886	0.50939	0.00027824	-0.26096	-0.00014254	0.24843	0.0001357	546.2316077258894	47.493	0.76806	47.576	47.297	48.065	0.083096					70	29	3	0	0	0	0.034936	1	9439	9439		47.594	11.467	1	271760			11341	5730	7491	7548	15553	15553		322			-0.09275104249832111
LPDQPPYHL	9	Unmodified	_LPDQPPYHL_					0	0	0		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2797241210938	2	540.279649	1078.54475	0.265	0.00014317	0.25754	0.00013915	0.52254	0.00028232	540.2796136666368	53.155	1.458	53.155	52.584	54.042	0					174	55	4	0	0	0	5.0762E-05	5	11280	11233;11280;11326;11381;11435		139.14	68.005	1	1889800			11342	3629	7492	7549	15554;15555;15556;15557;15558	15555					0.00861456443226416
LPDQPPYHL	9	Unmodified	_LPDQPPYHL_					0	0	0		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.27978515625	2	540.279649	1078.54475	0.51064	0.00027589	0.053191	2.8738E-05	0.56383	0.00030463	540.2795011746806	53.136	1.3687	53.202	52.576	53.945	0.06543					180	61	4	0	0	0	0.00081324	5	11085	11085;11125;11167;11222;11277		126.57	65.208	1	1478400			11343	3629	7492	7549	15559;15560;15561;15562;15563	15559					0.00861456443226416
LPDQTLPIL	9	Unmodified	_LPDQTLPIL_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.29998779296875	2	505.30005	1008.58555	0.49465	0.00024995	-0.22237	-0.00011237	0.27227	0.00013758	505.29989302198123	79.666	0.61707	79.666	79.372	79.989	0					50	21	3	0	0	0	0.083124	2	19337	19337;19390		36.127	10.728	1	327150			11344	2680	7493	7550	15564;15565	15564					0.08159797762868948
LPDQTLPIL	9	Unmodified	_LPDQTLPIL_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.3002014160156	2	505.30005	1008.58555	0.24866	0.00012565	0.12522	6.3275E-05	0.37389	0.00018892	505.3000355233353	79.645	0.634	79.672	79.415	80.049	0.026436					49	22	3	0	0	0	0.083124	2	19207	19160;19207		36.127	10.728	1	291090			11345	2680	7493	7550	15566;15567	15567					0.08159797762868948
LPDQTSQDL	9	Unmodified	_LPDQTSQDL_					0	0	0		ENSG00000169857|ENST00000306730|AVEN	ENSG00000169857|ENST00000306730|AVEN	ENSG00000169857|ENST00000306730|AVEN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7481994628906	2	508.748379	1015.4822	0.0057061	2.903E-06	-0.36806	-0.00018725	-0.36236	-0.00018435	508.7481465545243	44.938	0.62019	45.026	44.681	45.301	0.08754					50	23	3	0	0	0	0.29334	1	8597	8597		7.609	0.50723	1	185650			11346	4361	7494	7551	15568	15568					-0.024917344156051513
LPDRDLAL	8	Unmodified	_LPDRDLAL_					0	0	0		ENST00000596119.5_1_19:4175573-4175816:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF;ENSG00000077463|ENST00000337491|SIRT6	ENST00000596119.5_1_19:4175573-4175816:-|nuORF	ENST00000596119.5_1_19:4175573-4175816:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7609558105469	2	456.761092	911.507631	0.3086	0.00014096	0.26893	0.00012284	0.57753	0.00026379	456.7609084844068	49.922	1.0869	49.922	49.48	50.567	0					93	38	3	0	0	0	0.033785	2	10240	10240;10383		66.457	3.6176	1	725990			11347	862	7495	7552	15569;15570	15569					0.04833784897471105
LPDRDLAL	8	Unmodified	_LPDRDLAL_					0	0	0		ENST00000596119.5_1_19:4175573-4175816:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF;ENSG00000077463|ENST00000337491|SIRT6	ENST00000596119.5_1_19:4175573-4175816:-|nuORF	ENST00000596119.5_1_19:4175573-4175816:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7608947753906	2	456.761092	911.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.695	1	49.768	49.268	50.268	0.07312								0	0	0	0.26749	1	10089	10089		45.7	7.7256	1				11348	862	7495	7552	15571	15571					0.04833784897471105
LPDRDLAL	8	Unmodified	_LPDRDLAL_					0	0	0		ENST00000596119.5_1_19:4175573-4175816:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF;ENSG00000077463|ENST00000337491|SIRT6	ENST00000596119.5_1_19:4175573-4175816:-|nuORF	ENST00000596119.5_1_19:4175573-4175816:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7610778808594	2	456.761092	911.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.989	1	50.062	49.562	50.562	0.07312								0	0	0	0.33145	1	10177	10177		38.176	7.539	1				11349	862	7495	7552	15572	15572					0.04833784897471105
LPDTAADLDW	10	Unmodified	_LPDTAADLDW_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;ENST00000556959.1_1_14:72196918-72202208:+|nuORF	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7619018554688	2	558.764029	1115.5135	0.20642	0.00011534	-3.7284	-0.0020833	-3.522	-0.001968	558.7618765899966	44.688	0.42394	44.775	44.564	44.988	0.087543					16	15	2	0	0	0	0.44496	1	8594	8594		5.7319	0.43497	1	65656			11350	5303	7496	7553	15573	15573					-0.03963161381534519
LPDTAADLDW	10	Unmodified	_LPDTAADLDW_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;ENST00000556959.1_1_14:72196918-72202208:+|nuORF	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	558.764029	1115.5135	-0.085703	-4.7888E-05	-4.9888	-0.0027876	-5.0745	-0.0028355	558.7620655987745	44.802	0.43687	44.802	44.531	44.968	0	0.013495	-0.0010621	NaN	5.7319	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69183			11351	5303	7496	7553							-0.03963161381534519
LPDTILEKL	9	Unmodified	_LPDTILEKL_					0	0	0		ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.313232421875	2	521.313158	1040.61176	0.7074	0.00036877	-0.25093	-0.00013081	0.45647	0.00023796	521.312976613467	65.815	0.8788	65.815	65.549	66.428	0					69	31	3	0	0	0	0.00021732	1	15124	15124		136.39	47.438	1	856190			11352	5607	7497	7554	15574	15574					0.09308066934318049
LPDTILEKL	9	Unmodified	_LPDTILEKL_					0	0	0		ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.3133544921875	2	521.313158	1040.61176	0.47486	0.00024755	-0.14664	-7.6445E-05	0.32822	0.00017111	521.3130602118537	65.82	0.56844	65.887	65.597	66.166	0.066872					56	21	3	0	0	0	0.0039507	2	15003	14956;15003		103.82	34.719	1	805840			11353	5607	7497	7554	15575;15576	15576					0.09308066934318049
LPDTTSIFAL	10	Unmodified	_LPDTTSIFAL_					0	0	0		ENST00000428400.5_1_X:47086613-47088270:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENST00000428400.5_1_X:47086613-47088270:+|nuORF	ENST00000428400.5_1_X:47086613-47088270:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.295654296875	2	539.294965	1076.57538	0.27185	0.00014661	0.12305	6.6362E-05	0.3949	0.00021297	539.2951607384415	87.097	0.71751	87.097	86.969	87.687	0					47	28	2	0	0	0	0.29345	1	21647	21647		24.021	4.7636	1	193750			11354	1303	7498	7555	15577	15577					0.04015190037625871
LPDTTSIFAL	10	Unmodified	_LPDTTSIFAL_					0	0	0		ENST00000428400.5_1_X:47086613-47088270:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENST00000428400.5_1_X:47086613-47088270:+|nuORF	ENST00000428400.5_1_X:47086613-47088270:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2955322265625	2	539.294965	1076.57538	0.33003	0.00017798	-0.10289	-5.5489E-05	0.22714	0.0001225	539.2949962905386	87.075	0.65186	87.102	86.906	87.558	0.027573					52	27	3	0	0	0	0.30541	1	21487	21487		19.257	4.6753	1	138260			11355	1303	7498	7555	15578	15578					0.04015190037625871
LPDVERATL	9	Unmodified	_LPDVERATL_					0	0	0		nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.739990234375	2	507.284931	1012.55531	0.12807	6.4969E-05	-0.59991	-0.00030432	-0.47184	-0.00023936	507.28456134200997	50.168	0.55396	50.168	49.906	50.46	0					31	19	2	0	0	0	0.23831	1	10359	10359		17.443	4.4002	1	114460			11356	1449	7499	7556	15579	15579					0.04953439097675982
LPDVERATL	9	Unmodified	_LPDVERATL_					0	0	0		nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7400817871094	2	507.284931	1012.55531	0.21939	0.00011129	-1.0655	-0.00054053	-0.84615	-0.00042924	507.2843440734902	50.129	0.51681	50.202	49.868	50.385	0.07312					26	17	2	0	0	0	0.22247	1	10213	10213		20.415	7.883	1	91427			11357	1449	7499	7556	15580	15580					0.04953439097675982
LPDVLENK	8	Unmodified	_LPDVLENK_					0	0	0		ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.2607116699219	2	464.260925	926.507297	-0.35618	-0.00016536	-0.25117	-0.00011661	-0.60734	-0.00028197	464.2606903291158	41.07	0.49888	41.07	40.759	41.258	0					32	17	2	0	0	0	0.4772	1	7585	7585		15.847	0	1	105690			11358	1914	7500	7557	15581	15581					0.041103651776211336
LPDVLENK	8	Unmodified	_LPDVLENK_					0	0	0		ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	464.260925	926.507297	-0.43234	-0.00020072	-0.048096	-2.2329E-05	-0.48043	-0.00022305	464.26082992330885	40.926	0.56397	41.016	40.801	41.365	0.089645	-0.027302	8.344E-05	NaN	15.847	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99746			11359	1914	7500	7557							0.041103651776211336
LPDVLIIHL	9	Unmodified	_LPDVLIIHL_					0	0	0		ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.826171875	2	516.826235	1031.63792	0.85984	0.00044439	-0.37147	-0.00019198	0.48837	0.0002524	516.8259731250616	81.231	0.43312	81.231	81.056	81.489	0					31	14	3	0	0	0	0.065541	1	19880	19880		39.957	24.11	1	244040			11360	1369	7501	7558	15582	15582					0.1233638089647684
LPDVLIIHL	9	Unmodified	_LPDVLIIHL_					0	0	0		ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	516.826235	1031.63792	0.54759	0.00028301	-0.028872	-1.4922E-05	0.51871	0.00026809	516.8262204527323	81.291	0.45374	81.313	81.049	81.503	0.021866	0.040805	0.00019149	NaN	39.957	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236900			11361	1369	7501	7558							0.1233638089647684
LPDVSLQEF	9	Unmodified	_LPDVSLQEF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.271484375	2	524.27149	1046.52843	0.32702	0.00017145	-0.30552	-0.00016017	0.021497	1.127E-05	524.2714186260797	76.387	0.77414	76.387	76.173	76.947	0					56	28	3	0	0	0	0.0043591	3	18378	18326;18378;18427		96.367	44.098	1	1094800			11362	1343	7502	7559	15583;15584;15585	15584					0.007023304865015234
LPDVSLQEF	9	Unmodified	_LPDVSLQEF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2716064453125	2	524.27149	1046.52843	0.25844	0.00013549	-0.33644	-0.00017639	-0.078006	-4.0896E-05	524.2713879493397	76.341	0.69837	76.38	76.183	76.881	0.03923					57	25	3	0	0	0	0.0034419	5	18207	18158;18207;18257;18294;18307		106.94	45.583	1	1198100			11363	1343	7502	7559	15586;15587;15588;15589;15590	15587					0.007023304865015234
LPDWPEVYF	9	Unmodified	_LPDWPEVYF_					0	0	0		nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2821655273438	2	583.281857	1164.54916	0.74704	0.00043573	0.33819	0.00019726	1.0852	0.00063299	583.2817470586926	93.152	1.0546	93.152	92.793	93.848	0					118	40	5	0	0	0	0.037705	2	23462	23412;23462		46.021	25.567	1	336430			11364	3558	7503	7560	15591;15592	15592					-0.02653079133870051
LPDWPEVYF	9	Unmodified	_LPDWPEVYF_					0	0	0		nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2826538085938	2	583.281857	1164.54916	0.80003	0.00046664	0.1141	6.6554E-05	0.91414	0.0005332	583.2818062126861	93.1	1.0683	93.138	92.808	93.876	0.037369					137	42	5	0	0	0	0.074645	2	23245	23245;23286		37.974	23.136	1	336050			11365	3558	7503	7560	15593;15594	15593					-0.02653079133870051
LPDWRLVFL	9	Unmodified	_LPDWRLVFL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2346801757812	2	579.837134	1157.65972	0.35619	0.00020653	-0.19858	-0.00011514	0.15761	9.1386E-05	579.83683174159	90.482	0.42636	90.482	90.282	90.708	0					21	15	2	0	0	0	0.25052	1	22632	22632		8.7454	0.58988	1	100740			11366	774	7504	7561	15595	15595					0.08719185645054495
LPDYTSPVVL	10	Unmodified	_LPDYTSPVVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3031005859375	2	552.30279	1102.59103	0.50272	0.00027765	-0.17318	-9.5648E-05	0.32954	0.00018201	552.3025053561298	75.635	0.52717	75.635	75.295	75.822	0					50	22	3	0	0	0	0.12944	3	18129	18087;18129;18171		41.84	22.583	1	1172700			11367	5038	7505	7562	15596;15597;15598	15597					0.043834765546762355
LPDYTSPVVL	10	Unmodified	_LPDYTSPVVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.302978515625	2	552.30279	1102.59103	0.53918	0.00029779	-0.18459	-0.00010195	0.35459	0.00019584	552.3025606542501	75.605	0.50891	75.649	75.328	75.837	0.044037					48	23	3	0	0	0	0.046227	3	17959	17915;17959;18003		58.679	39.422	1	1169100			11368	5038	7505	7562	15599;15600;15601	15600					0.043834765546762355
LPEAFLYIG	9	Unmodified	_LPEAFLYIG_					0	0	0		ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7802734375	2	511.781493	1021.54843	0.35959	0.00018403	-2.5072	-0.0012831	-2.1476	-0.0010991	511.7803667912496	87.523	0.28455	87.523	87.348	87.633	0					16	10	2	0	0	0	0.21398	1	21759	21759		16.942	9.0321	1	57240			11369	4079	7506	7563	15602	15602					0.038521262170888804
LPEAFLYIG	9	Unmodified	_LPEAFLYIG_					0	0	0		ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.78033447265625	2	511.781493	1021.54843	0.2273	0.00011633	-1.8969	-0.00097079	-1.6696	-0.00085446	511.7802898045399	87.51	0.32007	87.539	87.332	87.652	0.029167					18	12	2	0	0	0	0.25209	1	21566	21566		12.532	0	1	58939			11370	4079	7506	7563	15603	15603					0.038521262170888804
LPEAFPITL	9	Unmodified	_LPEAFPITL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7892150878906	2	500.789318	999.564084	0.37075	0.00018567	1.0205	0.00051104	1.3912	0.0006967	500.7893486737331	87.508	0.56384	87.508	87.291	87.855	0					62	20	4	0	0	0	0.092418	1	21727	21727		34.102	7.2188	1	429930			11371	4608	7507	7564	15604	15604					0.06428412734146605
LPEAGPGRTL	10	Unmodified	_LPEAGPGRTL_					0	0	0		ENSG00000148926|ENST00000278175|ADM	ENSG00000148926|ENST00000278175|ADM	ENSG00000148926|ENST00000278175|ADM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.78521728515625	2	505.785099	1009.55564	-0.15488	-7.8337E-05	4.3306	0.0021904	4.1757	0.002112	505.78501624957613	39.857	0.34954	39.857	39.692	40.042	0					29	11	4	0	0	0	0.44253	1	7238	7238		6.1918	0	1	52910			11372	3381	7508	7565	15605	15605					0.051248588175326404
LPEAQPRQAR	10	Unmodified	_LPEAQPRQAR_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.3054809570312	2	583.325454	1164.63635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.327	1	49.327	48.827	49.827	0								0	0	0	0.33487	1	10108	10108		6.2058	0	1				11373	5605	7509	7566	15606	15606					0.06062139860409843
LPEAQWGYYD	10	Unmodified	_LPEAQWGYYD_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3138427734375	2	621.277303	1240.54005	0.10581	6.574E-05	1.3972	0.00086806	1.503	0.0009338	621.7799065107694	94.239	0.092606	94.277	94.203	94.295	0.038094					5	3	2	0	0	0	0.31838	1	23612	23612		1.4819	0.28856	1	35616	+		11374	8869	7510	7567	15607	15607					-0.07059472490186636
LPEDAGLSLE	10	Unmodified	_LPEDAGLSLE_					0	0	0		ENST00000316757.3_1_19:3760164-3761632:-|nuORF	ENST00000316757.3_1_19:3760164-3761632:-|nuORF	ENST00000316757.3_1_19:3760164-3761632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.266357421875	2	522.266404	1042.51826	0.05354	2.7962E-05	0.16312	8.5192E-05	0.21666	0.00011315	522.2663139848318	34.76	0.86401	34.76	34.395	35.259	0					81	31	4	0	0	0	0.11192	2	5765	5673;5765		43.858	3.6191	1	484330			11375	6019	7511	7568	15608;15609	15609					-0.0013027723873619834
LPEDAGLSLE	10	Unmodified	_LPEDAGLSLE_					0	0	0		ENST00000316757.3_1_19:3760164-3761632:-|nuORF	ENST00000316757.3_1_19:3760164-3761632:-|nuORF	ENST00000316757.3_1_19:3760164-3761632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7825927734375	2	522.266404	1042.51826	0.022934	1.1978E-05	0.24481	0.00012786	0.26775	0.00013984	522.266358277488	34.717	0.83178	34.794	34.445	35.276	0.076244					92	35	4	0	0	0	0.27354	2	5644	5536;5644		25.399	1.3745	1	392250			11376	6019	7511	7568	15610;15611	15611					-0.0013027723873619834
LPEDEGHTRTL	11	Unmodified	_LPEDEGHTRTL_					0	0	0		ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENSG00000166164|ENST00000394688|BRD7	ENSG00000166164|ENST00000394688|BRD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.31787109375	2	634.317491	1266.62043	-0.24831	-0.00015751	0.44032	0.0002793	0.19201	0.00012179	634.3177802971729	30.198	0.25986	30.198	30.055	30.315	0					23	11	3	0	0	0	0.41047	1	4342	4342		2.086	1.7354	1	18764			11377	4136	7512	7569	15612	15612					-0.002216111671486942
LPEDEGHTRTL	11	Unmodified	_LPEDEGHTRTL_					0	0	0		ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENSG00000166164|ENST00000394688|BRD7	ENSG00000166164|ENST00000394688|BRD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.21392822265625	3	423.214086	1266.62043	0.046087	1.9505E-05	-0.27963	-0.00011834	-0.23354	-9.8839E-05	423.2139441888886	30.172	0.88272	30.172	29.896	30.779	0					87	44	3	0	0	0	0.25655	1	4353	4353		23.016	23.016	1	141420			11378	4136	7512	7569	15613	15613					-0.002216111671486942
LPEDEGHTRTL	11	Unmodified	_LPEDEGHTRTL_					0	0	0		ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENSG00000166164|ENST00000394688|BRD7	ENSG00000166164|ENST00000394688|BRD7	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	423.214086	1266.62043	-0.25196	-0.00010663	0.10096	4.273E-05	-0.15099	-6.3903E-05	423.21413137082624	30.156	0.68645	30.232	29.987	30.673	0.075403	0.030068	0.00024468	NaN	23.016	96	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124790			11379	4136	7512	7569							-0.002216111671486942
LPEDIHSTF	9	Unmodified	_LPEDIHSTF_					0	0	0		ENST00000523387.5_1_8:2986336-3141840:-|nuORF;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1	ENST00000523387.5_1_8:2986336-3141840:-|nuORF	ENST00000523387.5_1_8:2986336-3141840:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2640991210938	2	529.761289	1057.50803	0.53575	0.00028382	2.2402	0.0011868	2.7759	0.0014706	529.7626752517053	87.974	0.40326	87.974	87.736	88.139	0					18	13	2	0	0	0	0.10067	1	21888	21888		32.305	9.1571	1	107140			11380	4908	7513	7570	15614	15614					-0.018428401733444844
LPEDIHSTF	9	Unmodified	_LPEDIHSTF_					0	0	0		ENST00000523387.5_1_8:2986336-3141840:-|nuORF;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1	ENST00000523387.5_1_8:2986336-3141840:-|nuORF	ENST00000523387.5_1_8:2986336-3141840:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.762451171875	2	529.761289	1057.50803	0.33316	0.0001765	2.3966	0.0012697	2.7298	0.0014461	529.762580120225	87.968	0.40155	87.998	87.795	88.196	0.030037					22	13	2	0	0	0	0.14091	1	21701	21701		25.399	3.6527	1	103390			11381	4908	7513	7570	15615	15615					-0.018428401733444844
LPEDLYHLI	9	Unmodified	_LPEDLYHLI_					0	0	0		ENST00000458227.1_1_2:25191966-25192092:-|nuORF;ENST00000531908.5_1_11:17095982-17097186:-|nuORF;ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000458227.1_1_2:25191966-25192092:-|nuORF	ENST00000458227.1_1_2:25191966-25192092:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.802978515625	2	556.802957	1111.59136	0.49906	0.00027788	0.88298	0.00049165	1.382	0.00076953	556.8031456786799	74.458	0.49102	74.458	74.199	74.69	0					33	17	3	0	0	0	0.074645	1	17778	17778		37.974	22.127	1	193010			11382	1676	7514	7571	15616	15616					0.040028962745282115
LPEEEQQRVL	10	Unmodified	_LPEEEQQRVL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.8297119140625	2	620.830234	1239.64592	-0.92653	-0.00057522	0.014422	8.9536E-06	-0.91211	-0.00056626	620.8302582732083	41.492	1.3498	41.492	41.225	42.575	0					137	47	5	0	0	0	4.5457E-16	5	7748	7702;7748;7795;7843;7899		179.28	99.231	1	1974400			11383	1586	7515	7572	15617;15618;15619;15620;15621	15618					0.03567863355283407
LPEEEQQRVL	10	Unmodified	_LPEEEQQRVL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.8298950195312	2	620.830234	1239.64592	-0.64058	-0.00039769	0.014832	9.2081E-06	-0.62575	-0.00038848	620.8302684267234	41.438	1.0257	41.527	41.265	42.291	0.089764					111	40	5	0	0	0	9.4002E-17	4	7599	7556;7599;7638;7687		192.32	115.5	1	1627800			11384	1586	7515	7572	15622;15623;15624;15625	15623					0.03567863355283407
LPEEIREPAL	10	Unmodified	_LPEEIREPAL_					0	0	0		ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1;ENSG00000117697|ENST00000366977|NSL1	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.82470703125	2	583.824421	1165.63429	0.739	0.00043145	-0.18541	-0.00010825	0.55359	0.0003232	583.8241296629845	54.969	0.53333	54.969	54.735	55.269	0					46	19	3	0	0	0	0.065727	1	11848	11848		53.317	28.326	1	573180			11385	2016	7516	7573	15626	15626					0.0580966633197022
LPEEIREPAL	10	Unmodified	_LPEEIREPAL_					0	0	0		ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1;ENSG00000117697|ENST00000366977|NSL1	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8244018554688	2	583.824421	1165.63429	0.88685	0.00051777	-0.45186	-0.00026381	0.435	0.00025396	583.8241162119488	54.941	0.46459	55.006	54.803	55.268	0.065128					50	18	4	0	0	0	0.093146	3	11669	11669;11715;11730		46.022	20.623	1	423690			11386	2016	7516	7573	15627;15628;15629	15627					0.0580966633197022
LPEEISGLTSL	11	Unmodified	_LPEEISGLTSL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1;ENST00000487251.5_1_6:53762124-53769284:+|nuORF	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.8164672851562	2	579.816261	1157.61797	0.38369	0.00022247	0.18665	0.00010822	0.57033	0.00033069	579.8163146317448	77.572	0.52824	77.572	77.429	77.958	0					53	18	4	0	0	0	0.0087129	1	18720	18720		76.825	31.125	1	908150			11387	2843	7517	7574	15630	15630					0.04546540375190489
LPEEISGLTSL	11	Unmodified	_LPEEISGLTSL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1;ENST00000487251.5_1_6:53762124-53769284:+|nuORF	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.816650390625	2	579.816261	1157.61797	0.58484	0.0003391	-0.0074032	-4.2925E-06	0.57744	0.00033481	579.8163224400515	77.576	0.63782	77.61	77.417	78.055	0.034485					42	21	4	0	0	0	0.019345	1	18559	18559		100.09	54.391	1	643590			11388	2843	7517	7574	15631	15631					0.04546540375190489
LPEELFLLL	9	Unmodified	_LPEELFLLL_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.8258666992188	2	543.825901	1085.63725	0.31945	0.00017373	0.054469	2.9622E-05	0.37392	0.00020335	543.8258677050243	107.24	0.55761	107.26	107.06	107.62	0.025711					150	57	4	0	0	0	0.092418	4	27501	27434;27466;27501;27542		34.102	21.571	1	2768800			11389	5753	7518	7575	15632;15633;15634;15635	15634					0.09785541456767533
LPEELSYLSSA	11	Unmodified	_LPEELSYLSSA_					0	0	0		ENSG00000204542|ENST00000259870|C6orf15	ENSG00000204542|ENST00000259870|C6orf15	ENSG00000204542|ENST00000259870|C6orf15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.805419921875	2	604.805894	1207.59723	0.69998	0.00042335	-2.1442	-0.0012968	-1.4442	-0.00087345	604.8047591554825	83.196	0.46194	83.196	83.023	83.485	0					33	15	3	0	0	0	0.35043	1	20438	20438		12.241	4.0851	1	359150			11390	5477	7519	7576	15636	15636					0.0017394999551925139
LPEEVSLQEQL	11	Unmodified	_LPEEVSLQEQL_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3170166015625	2	642.837725	1283.6609	0.34226	0.00022002	-0.5523	-0.00035504	-0.21004	-0.00013502	643.3393766235187	68.295	0.40302	68.295	68.127	68.53	0					20	13	2	0	0	0	0.31038	1	15898	15898		7.9454	1.7396	1	107330			11391	5318	7520	7577	15637	15637					0.030413104326498797
LPEEVSLQEQL	11	Unmodified	_LPEEVSLQEQL_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3167724609375	2	642.837725	1283.6609	0.35919	0.0002309	-0.057174	-3.6754E-05	0.30201	0.00019414	642.8370565892164	68.233	0.38011	68.297	68.129	68.51	0.063507					24	13	3	0	0	0	0.31047	1	15734	15734		6.6304	2.686	1	138830			11392	5318	7520	7577	15638	15638					0.030413104326498797
LPEEWSQWL	9	Unmodified	_LPEEWSQWL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.290283203125	2	594.290214	1186.56587	0.24246	0.00014409	0.073285	4.3552E-05	0.31575	0.00018765	594.2902576936415	88.977	0.77172	88.977	88.764	89.536	0					76	29	4	0	0	0	0.0089808	2	22227	22184;22227		70.332	44.933	1	708400			11393	1508	7521	7578	15639;15640	15640					-0.019945782478771434
LPEEWSQWL	9	Unmodified	_LPEEWSQWL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2901611328125	2	594.290214	1186.56587	0.20832	0.0001238	-0.092808	-5.5155E-05	0.11551	6.8649E-05	594.2901002220838	88.962	0.71261	88.994	88.772	89.485	0.032265					78	27	4	0	0	0	0.017478	1	22056	22056		60.074	38.537	1	766350			11394	1508	7521	7578	15641	15641					-0.019945782478771434
LPEFEKSSL	9	Unmodified	_LPEFEKSSL_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2785034179688	2	525.279315	1048.54408	0.15136	7.9506E-05	-0.87248	-0.0004583	-0.72112	-0.00037879	525.278486472756	50.641	0.31276	50.641	50.514	50.827	0					18	10	2	0	0	0	0.02143	1	10513	10513		57.249	15.409	1	97143			11395	825	7522	7579	15642	15642					0.02174617003538515
LPEFEKSSL	9	Unmodified	_LPEFEKSSL_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.279315	1048.54408	0.16804	8.827E-05	-0.8195	-0.00043047	-0.65145	-0.0003422	525.2785847607615	50.562	0.29885	50.635	50.47	50.769	0.07312	-0.0028958	2.9908E-05	NaN	57.249	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87927			11396	825	7522	7579							0.02174617003538515
LPEFSQDTF	9	Unmodified	_LPEFSQDTF_					0	0	0		ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2529296875	2	542.253297	1082.49204	0.35867	0.00019449	-2.212	-0.0011995	-1.8533	-0.001005	542.7536140082632	61.39	0.29913	61.463	61.2	61.499	0.073421					18	11	2	0	0	0	0.17491	1	13613	13613		28.487	1.6032	1	375200			11397	5100	7523	7580	15643	15643					-0.04590546410236129
LPEFSQDTF	9	Unmodified	_LPEFSQDTF_					0	0	0		ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	542.253297	1082.49204	0.36967	0.00020046	-1.9819	-0.0010747	-1.6122	-0.00087424	542.2521446266136	61.446	0.36137	61.446	61.135	61.496	0	-0.0084117	0.00016383	NaN	28.487	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385960			11398	5100	7523	7580							-0.04590546410236129
LPEFVEPFL	9	Unmodified	_LPEFVEPFL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7947998046875	2	545.794601	1089.57465	0.52205	0.00028493	0.074296	4.055E-05	0.59634	0.00032548	545.7945416576913	93.646	0.52962	93.646	93.411	93.941	0					74	21	5	0	0	0	0.037705	3	23597	23597;23636;23681		46.021	5.5556	1	2009100			11399	4573	7524	7581	15644;15645;15646	15644					0.03344395388580779
LPEFVEPFL	9	Unmodified	_LPEFVEPFL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7940673828125	2	545.794601	1089.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.113	1	94.113	93.613	94.613	0								0	0	0	0.21527	1	23754	23754		15.847	1.0089	1				11400	4573	7524	7581	15647	15647					0.03344395388580779
LPEFVEPFL	9	Unmodified	_LPEFVEPFL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7948608398438	2	545.794601	1089.57465	0.45063	0.00024595	0.18662	0.00010185	0.63725	0.00034781	545.794618303605	93.628	0.57246	93.665	93.39	93.963	0.037369					77	23	5	0	0	0	0.015682	4	23427	23427;23476;23523;23530		61.357	21.408	1	2172000			11401	4573	7524	7581	15648;15649;15650;15651	15648					0.03344395388580779
LPEFVEPFL	9	Unmodified	_LPEFVEPFL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7947387695312	2	545.794601	1089.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.149	1	94.187	93.687	94.687	0.038086								0	0	0	0.2428	1	23607	23607		10.824	0.75	1				11402	4573	7524	7581	15652	15652					0.03344395388580779
LPEGASHTPLS	11	Unmodified	_LPEGASHTPLS_					0	0	0			REV__nc|ENSG00000061337|Q9Y250-6|LZTS1	REV__nc|ENSG00000061337|Q9Y250-6|LZTS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2698364257812	2	554.785296	1107.55604	0.82928	0.00046007	1.1458	0.00063567	1.9751	0.0010957	554.7858246549325	84.097	0.31491	84.097	83.9	84.215	0					17	10	2	0	0	0	0.29854	1	20691	20691		15.248	6.6552	1	110330	+		11403	12751	7525	7582	15653	15653					0.006562337467130419
LPEGIRPGTVL	11	Unmodified	_LPEGIRPGTVL_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.343017578125	2	576.342781	1150.67101	0.2492	0.00014363	-0.28562	-0.00016461	-0.036417	-2.0989E-05	576.3424672131105	56.379	0.78344	56.379	56.19	56.974	0					62	28	4	0	0	0	0.016527	3	12297	12251;12297;12342		104.48	54.93	1	834440			11404	4758	7526	7583	15654;15655;15656	15655					0.10169962948521061
LPEGIRPGTVL	11	Unmodified	_LPEGIRPGTVL_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.3427734375	2	576.342781	1150.67101	0.20485	0.00011806	-0.037708	-2.1733E-05	0.16714	9.6328E-05	576.3426089314956	56.294	0.50014	56.361	56.183	56.683	0.066452					43	18	3	0	0	0	0.013954	1	12090	12090		94.909	51.136	1	602070			11405	4758	7526	7583	15657	15657					0.10169962948521061
LPEGVEPLL	9	Unmodified	_LPEGVEPLL_					0	0	0		nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN	nc|ENSG00000146839|Q9Y493-6|ZAN	nc|ENSG00000146839|Q9Y493-6|ZAN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.77880859375	2	483.778951	965.543348	0.20319	9.8301E-05	0.3154	0.00015258	0.51859	0.00025088	483.77896924136485	74.914	0.54471	74.914	74.604	75.148	0					40	19	3	0	0	0	0.25979	1	17889	17889		11.64	0	1	324120			11406	3300	7527	7584	15658	15658					0.059198223544854045
LPEGVEPLL	9	Unmodified	_LPEGVEPLL_					0	0	0		nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN	nc|ENSG00000146839|Q9Y493-6|ZAN	nc|ENSG00000146839|Q9Y493-6|ZAN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7789306640625	2	483.778951	965.543348	0.12703	6.1453E-05	0.34476	0.00016679	0.47179	0.00022824	483.77890644805245	74.879	0.5538	74.925	74.591	75.144	0.046051					31	19	2	0	0	0	0.25979	1	17717	17717		11.64	0	1	182470			11407	3300	7527	7584	15659	15659					0.059198223544854045
LPEGVEPLL	9	Unmodified	_LPEGVEPLL_					0	0	0		nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN	nc|ENSG00000146839|Q9Y493-6|ZAN	nc|ENSG00000146839|Q9Y493-6|ZAN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	483.778951	965.543348	0.20319	9.8301E-05	0.3154	0.00015258	0.51859	0.00025088	483.77896924136485	74.914	0.54471	74.914	74.604	75.148	0	-0.0054923	-1.1126E-05	NaN	11.64	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324120			11408	3300	7527	7584							0.059198223544854045
LPEIDHIMQ	9	Unmodified	_LPEIDHIMQ_					0	0	0		ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.334228515625	2	548.278792	1094.54303	0.28473	0.00015611	1.8933	0.0010381	2.1781	0.0011942	548.2795688467395	95.528	0.33459	95.528	95.467	95.801	0					23	15	2	0	0	0	0.16944	1	24174	24174		30.637	0	1	255960			11409	2947	7528	7585	15660	15660					-0.00045920637035123946
LPEKEGEEL	9	Unmodified	_LPEKEGEEL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.266357421875	2	522.266404	1042.51826	0.05354	2.7962E-05	0.16312	8.5192E-05	0.21666	0.00011315	522.2663139848318	34.76	0.86401	34.76	34.395	35.259	0					81	31	4	0	0	0	0.013066	1	5716	5716		63.227	19.369	1	484330			11410	4703	7529	7586	15661	15661					-0.001302772387589357
LPEKEGEEL	9	Unmodified	_LPEKEGEEL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.266357421875	2	522.266404	1042.51826	0.022934	1.1978E-05	0.24481	0.00012786	0.26775	0.00013984	522.266358277488	34.717	0.83178	34.794	34.445	35.276	0.076244					92	35	4	0	0	0	0.013066	1	5581	5581		63.227	19.369	1	392250			11411	4703	7529	7586	15662	15662					-0.001302772387589357
LPEKEKLV	8	Unmodified	_LPEKEKLV_					0	0	0		nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.23138427734375	2	478.294768	954.574983	0.23457	0.00011219	0.64338	0.00030772	0.87795	0.00041992	478.2948608302662	54.049	0.5821	54.114	53.866	54.448	0.065132					53	21	3	0	0	0	0.34837	1	11356	11356		21.747	1.293	1	889190			11412	2619	7530	7587	15663	15663					0.09587815108420727
LPEKEVLVL	9	Unmodified	_LPEKEVLVL_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3236083984375	2	520.323525	1038.6325	0.21916	0.00011403	0.16642	8.6591E-05	0.38557	0.00020062	520.3235116181941	58.199	0.28198	58.199	57.935	58.217	0					28	9	4	0	0	0	0.0077293	1	12816	12816		74.2	7.743	1	1264800			11413	2822	7531	7588	15664	15664					0.11472657313993295
LPEKEVLVL	9	Unmodified	_LPEKEVLVL_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3236083984375	2	520.323525	1038.6325	0.06992	3.6381E-05	0.10174	5.294E-05	0.17166	8.9321E-05	520.3235110359541	58.373	0.50562	58.373	58.256	58.762	0					47	18	4	0	0	0	0.02143	1	12870	12870		57.249	7.6948	1	955420			11414	2822	7531	7588	15665	15665					0.11472657313993295
LPEKEVLVL	9	Unmodified	_LPEKEVLVL_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.3236083984375	2	520.323525	1038.6325	0.19413	0.00010101	0.12027	6.2578E-05	0.31439	0.00016359	520.3234946935215	58.265	0.94827	58.336	57.943	58.891	0.070473					74	33	4	0	0	0	0.0077293	1	12670	12670		74.2	7.743	1	1025900			11415	2822	7531	7588	15666	15666					0.11472657313993295
LPEKIESSL	9	Unmodified	_LPEKIESSL_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.28594970703125	2	508.28714	1014.55973	0.05592	2.8423E-05	-0.74036	-0.00037632	-0.68444	-0.00034789	508.28667041545225	46.275	0.24367	46.361	46.215	46.459	0.085617					13	7	2	0	0	0	0.22861	1	9065	9065		15.248	1.3424	1	58994			11416	1820	7532	7589	15667	15667					0.05302903520566815
LPEKLTIYTTL	11	Unmodified	_LPEKLTIYTTL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.3788452148438	2	646.379029	1290.7435	0.74144	0.00047925	-0.38741	-0.00025041	0.35403	0.00022884	646.3786372270862	66.385	0.49255	66.385	66.196	66.688	0					42	19	3	0	0	0	0.11869	2	15302	15302;15351		42.835	30.595	1	273710			11417	2820	7533	7590	15668;15669	15668					0.10976252231421313
LPEKLTIYTTL	11	Unmodified	_LPEKLTIYTTL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	646.37890625	2	646.379029	1290.7435	0.50061	0.00032359	0.003484	2.252E-06	0.5041	0.00032584	646.3788852399857	66.414	0.52097	66.481	66.254	66.775	0.066872					38	20	3	0	0	0	0.089332	2	15147	15147;15193		48.073	35.832	1	308640			11418	2820	7533	7590	15670;15671	15670					0.10976252231421313
LPEKTQESL	9	Unmodified	_LPEKTQESL_					0	0	0		ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52	ENST00000521618.1_1_8:80950353-80954926:-|nuORF	ENST00000521618.1_1_8:80950353-80954926:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7821655273438	2	522.782222	1043.54989	-0.091811	-4.7997E-05	0.035817	1.8724E-05	-0.055994	-2.9272E-05	522.7821676302326	33.025	0.91824	33.025	32.63	33.548	0					81	37	4	0	0	0	0.11198	2	5217	5172;5217		29.841	5.82	1	204220			11419	844	7534	7591	15672;15673	15673					0.029857155152058112
LPEKTQESL	9	Unmodified	_LPEKTQESL_					0	0	0		ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-3|TPD52	ENST00000521618.1_1_8:80950353-80954926:-|nuORF	ENST00000521618.1_1_8:80950353-80954926:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7822265625	2	522.782222	1043.54989	-0.11001	-5.7513E-05	0.053999	2.823E-05	-0.056014	-2.9283E-05	522.7822214183541	32.969	0.91851	33.043	32.693	33.611	0.074322					78	38	3	0	0	0	0.078774	2	5079	5032;5079		37.075	7.2341	1	160520			11420	844	7534	7591	15674;15675	15675					0.029857155152058112
LPELGWGRH	9	Unmodified	_LPELGWGRH_					0	0	0		nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	nc|ENSG00000114859|P51788-4|CLCN2	nc|ENSG00000114859|P51788-4|CLCN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7859497070312	2	532.785433	1063.55631	0.61655	0.00032849	0.029405	1.5667E-05	0.64596	0.00034416	532.7853983429907	92.203	0.8886	92.24	91.859	92.748	0.03653					56	31	2	0	0	0	0.19376	1	23044	23044		25.399	25.399	1	523480			11421	1861	7535	7592	15676	15676					0.02707698257222546
LPELGWGRH	9	Unmodified	_LPELGWGRH_					0	0	0		nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	nc|ENSG00000114859|P51788-4|CLCN2	nc|ENSG00000114859|P51788-4|CLCN2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.785433	1063.55631	0.57392	0.00030577	0.71028	0.00037842	1.2842	0.0006842	532.7853817855579	92.288	0.81405	92.288	91.927	92.741	0	0.024135	0.00052058	NaN	25.399	102	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	684450			11422	1861	7535	7592							0.02707698257222546
LPELNPPVL	9	Unmodified	_LPELNPPVL_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2949523925781	2	496.294768	990.574983	0.422	0.00020943	0.01714	8.5064E-06	0.43914	0.00021794	496.2946693509399	77.569	0.3933	77.569	77.413	77.807	0					24	14	2	0	0	0	0.30397	1	18736	18736		6.2058	2.2614	1	196780			11423	5397	7536	7593	15677	15677					0.07931815108440787
LPELNPPVL	9	Unmodified	_LPELNPPVL_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2945556640625	2	496.294768	990.574983	0.52728	0.00026169	-0.39581	-0.00019644	0.13148	6.525E-05	496.29448350561455	77.552	0.38013	77.586	77.442	77.822	0.034485					25	12	3	0	0	0	0.28472	1	18563	18563		8.7454	2.5396	1	148190			11424	5397	7536	7593	15678	15678					0.07931815108440787
LPELQLICL	9	Unmodified	_LPELQLICL_					0	0	0		ENSG00000198860|ENST00000645668|TSEN15;ENST00000457455.1_1_1:184023496-184023998:+|nuORF;nc|ENSG00000198860|Q8WW01-2|TSEN15	ENSG00000198860|ENST00000645668|TSEN15	ENSG00000198860|ENST00000645668|TSEN15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.304443359375	2	521.304278	1040.594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.418	1	96.457	95.957	96.957	0.039772								0	0	0	0.23593	1	24300	24300		12.241	0	1				11425	5421	7537	7594	15679	15679					0.07533028407806341
LPELRTKT	8	Unmodified	_LPELRTKT_					0	0	0		nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	nc|ENSG00000215041|Q96JN8-2|NEURL4	nc|ENSG00000215041|Q96JN8-2|NEURL4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.74017333984375	2	479.290017	956.565481	0.2346	0.00011244	-1.3018	-0.00062394	-1.0672	-0.0005115	479.2894711573336	53.995	0.2813	54.06	53.972	54.254	0.065128					13	10	2	0	0	0	0.35759	1	11427	11427		13.508	0	1	66907			11426	5575	7538	7595	15680	15680					0.0854604682289164
LPELSWSTL	9	Unmodified	_LPELSWSTL_					0	0	0			REV__ENST00000524877.5_1_11:61722897-61725974:+|nuORF	REV__ENST00000524877.5_1_11:61722897-61725974:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7955932617188	2	523.281857	1044.54916	0.5697	0.00029811	-3.3057	-0.0017298	-2.736	-0.0014317	523.2798607072378	54.761	0.33765	54.761	54.614	54.951	0					25	12	3	0	0	0	0.23598	1	11820	11820		10.824	0.75	1	165870	+		11427	12318	7539	7596	15681	15681					0.028669208661540324
LPENITHAF	9	Unmodified	_LPENITHAF_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2710571289062	2	521.271824	1040.5291	0.23301	0.00012146	-0.62641	-0.00032653	-0.3934	-0.00020507	521.2712107059249	50.57	0.29785	50.643	50.526	50.824	0.07312					21	10	3	0	0	0	0.27332	1	10365	10365		10.074	2.1638	1	94668			11428	4772	7540	7597	15682	15682					0.010451699261693648
LPEPLSWRSD	10	Unmodified	_LPEPLSWRSD_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3344116210938	2	600.306395	1198.59824	0.36489	0.00021904	3.0374	0.0018234	3.4023	0.0020424	600.3080615141647	88.806	0.42802	88.839	88.66	89.088	0.032265					35	17	3	0	0	0	0.31616	1	22026	22026		10.074	0.6908	1	145250			11429	2100	7541	7598	15683	15683					0.006882091551005942
LPEPNHVML	9	Oxidation (M)	_LPEPNHVM(Oxidation (M))L_		LPEPNHVM(1)L		LPEPNHVM(52)L	0	0	1		ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2;ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.289794921875	2	533.273509	1064.53247	0.23081	0.00012308	0.86328	0.00046037	1.0941	0.00058345	533.2738921922304	48.696	0.66366	48.696	48.453	49.116	0					56	22	3	0	0	0	0.029291	1	9905	9905		51.63	9.5352	1	336220			11430	1723	7542	7599	15684	15684		103			0.00278096708530029
LPEPNHVML	9	Oxidation (M)	_LPEPNHVM(Oxidation (M))L_		LPEPNHVM(1)L		LPEPNHVM(52)L	0	0	1		ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2;ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2900390625	2	533.273509	1064.53247	0.34492	0.00018393	0.97958	0.00052238	1.3245	0.00070632	533.2739471003352	48.628	0.6671	48.705	48.439	49.106	0.076603					56	22	3	0	0	0	0.029291	2	9745	9745;9769		51.63	17.527	1	221470			11431	1723	7542	7599	15685;15686	15685		103			0.00278096708530029
LPEPVVPWSQ	10	Unmodified	_LPEPVVPWSQ_					0	0	0		ENST00000488795.1_1_2:69034406-69043495:+|nuORF;nc|ENSG00000163219|P42331-2|ARHGAP25;nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25;ENSG00000163219|ENST00000409202|ARHGAP25	ENST00000488795.1_1_2:69034406-69043495:+|nuORF	ENST00000488795.1_1_2:69034406-69043495:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.3093872070312	2	576.308406	1150.60226	0.38841	0.00022384	1.305	0.0007521	1.6934	0.00097595	576.30930788716	96.469	0.53024	96.469	96.214	96.745	0					73	24	4	0	0	0	0.17573	2	24496	24452;24496		36.506	9.426	1	1768700			11432	3884	7543	7600	15687;15688	15688					0.032982986488150345
LPEPYWIVL	9	Unmodified	_LPEPYWIVL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3182983398438	2	565.318243	1128.62193	0.34361	0.00019425	-0.026098	-1.4754E-05	0.31751	0.0001795	565.3182695102388	96.469	1.2516	96.469	96.187	97.438	0					191	59	5	0	0	0	0.092418	5	24420	24420;24464;24512;24555;24601		34.102	19.264	1	13923000			11433	1751	7544	7601	15689;15690;15691;15692;15693	15689					0.06276674659557102
LPEPYWIVL	9	Unmodified	_LPEPYWIVL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.318359375	2	565.318243	1128.62193	0.38486	0.00021757	-0.16139	-9.1236E-05	0.22347	0.00012633	565.3181875190393	96.449	1.5551	96.489	96.199	97.754	0.039772					268	80	5	0	0	0	0.05573	6	24293	24254;24293;24337;24380;24422;24557		42.095	27.256	1	9036900			11434	1751	7544	7601	15694;15695;15696;15697;15698;15699	15695					0.06276674659557102
LPEQHDCTF	9	Unmodified	_LPEQHDCTF_					0	0	0		ENST00000463847.1_1_6:38110907-38120162:+|nuORF;ENSG00000156639|ENST00000287218|ZFAND3	ENST00000463847.1_1_6:38110907-38120162:+|nuORF	ENST00000463847.1_1_6:38110907-38120162:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2366333007812	2	545.237124	1088.45969	-0.32154	-0.00017532	-0.26638	-0.00014524	-0.58792	-0.00032056	545.2367185262982	42.013	0.44708	42.103	41.844	42.291	0.089764					32	17	2	0	0	0	0.26104	1	7780	7780		11.495	1.4208	1	74275			11435	3630	7545	7602	15700	15700					-0.08099657084881073
LPERFLAVL	9	Unmodified	_LPERFLAVL_					0	0	0		ENSG00000198189|ENST00000358290|HSD17B11;ENST00000502576.5_1_4:88258430-88295551:-|nuORF	ENSG00000198189|ENST00000358290|HSD17B11	ENSG00000198189|ENST00000358290|HSD17B11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3239135742188	2	529.32386	1056.63317	0.50546	0.00026755	-0.11493	-6.0838E-05	0.39053	0.00020672	529.3237299106593	70.673	0.38139	70.673	70.506	70.888	0					27	13	3	0	0	0	0.24273	1	16622	16622		13.615	2.7909	1	148060			11436	5351	7546	7603	15701	15701					0.10711496753719985
LPERFLAVL	9	Unmodified	_LPERFLAVL_					0	0	0		ENSG00000198189|ENST00000358290|HSD17B11;ENST00000502576.5_1_4:88258430-88295551:-|nuORF	ENSG00000198189|ENST00000358290|HSD17B11	ENSG00000198189|ENST00000358290|HSD17B11	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	529.32386	1056.63317	0.50546	0.00026755	-0.11493	-6.0838E-05	0.39053	0.00020672	529.3237299106593	70.673	0.38139	70.673	70.506	70.888	0	0.00050703	0.00014959	NaN	13.615	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148060			11437	5351	7546	7603							0.10711496753719985
LPERNVPSL	9	Unmodified	_LPERNVPSL_					0	0	0		ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7926025390625	2	512.792924	1023.57129	-0.16889	-8.6604E-05	-0.26712	-0.00013698	-0.436	-0.00022358	512.7927187558162	44.819	0.68921	44.819	44.582	45.271	0					65	24	4	0	0	0	0.029591	1	8780	8780		51.415	11.176	1	682370			11438	6047	7547	7604	15702	15702					0.0604514533456495
LPERNVPSL	9	Unmodified	_LPERNVPSL_					0	0	0		ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.792724609375	2	512.792924	1023.57129	0.044061	2.2594E-05	-0.23551	-0.00012077	-0.19145	-9.8175E-05	512.7927014554622	44.735	0.70105	44.822	44.564	45.265	0.08754					61	25	3	0	0	0	0.013066	1	8616	8616		63.227	17.528	1	476360			11439	6047	7547	7604	15703	15703					0.0604514533456495
LPERNVPSL	9	Unmodified	_LPERNVPSL_					0	0	0		ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.792924	1023.57129	-0.16889	-8.6604E-05	-0.26712	-0.00013698	-0.436	-0.00022358	512.7927187558162	44.819	0.68921	44.819	44.582	45.271	0	-0.0014087	-1.4913E-05	NaN	63.227	65	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	682370			11440	6047	7547	7604							0.0604514533456495
LPESENLQEF	10	Unmodified	_LPESENLQEF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3012084960938	2	603.287868	1204.56118	0.34045	0.00020539	1.0393	0.00062702	1.3798	0.00083241	603.2884609425728	56.735	0.18114	56.735	56.65	56.831	0					10	6	2	0	0	0	0.19399	1	12378	12378		34.402	0.29928	1	666720			11441	4351	7548	7605	15704	15704					-0.0329150718132496
LPESIGALL	9	Unmodified	_LPESIGALL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.77374267578125	2	456.773668	911.532783	0.93152	0.00042549	-0.74667	-0.00034106	0.18485	8.4433E-05	456.77325741908203	80.786	0.48559	80.786	80.571	81.056	0					38	16	3	0	0	0	0.024893	1	19689	19689		54.774	12.679	1	230810			11442	2843	7549	7606	15705	15705					0.0734783970007129
LPESIGALL	9	Unmodified	_LPESIGALL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.77374267578125	2	456.773668	911.532783	0.5509	0.00025164	-0.20377	-9.3077E-05	0.34713	0.00015856	456.7734640256252	80.755	0.45934	80.779	80.592	81.051	0.023605					33	15	3	0	0	0	0.05573	1	19520	19520		42.095	6.0504	1	190420			11443	2843	7549	7606	15706	15706					0.0734783970007129
LPESIGALLHL	11	Unmodified	_LPESIGALLHL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.8453979492188	2	581.845156	1161.67576	0.92361	0.0005374	-0.28283	-0.00016456	0.64078	0.00037283	581.845054779013	81.621	0.37623	81.621	81.434	81.81	0					25	12	3	0	0	0	0.017604	1	19970	19970		118.89	77.055	1	185670			11444	2843	7550	7607	15707	15707					0.10138847091297976
LPESIGALLHL	11	Unmodified	_LPESIGALLHL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.8456420898438	2	581.845156	1161.67576	0.6572	0.00038239	0.0042754	2.4876E-06	0.66147	0.00038487	581.8452211378996	81.584	0.46603	81.606	81.503	81.969	0.021866					25	16	2	0	0	0	0.0038049	1	19797	19797		81.89	54.261	1	234300			11445	2843	7550	7607	15708	15708					0.10138847091297976
LPESLTSLLVL	11	Unmodified	_LPESLTSLLVL_					0	0	0		ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENSG00000162341|ENST00000294309|TPCN2	ENSG00000162341|ENST00000294309|TPCN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8606567382812	2	592.860472	1183.70639	0.43151	0.00025582	0.10836	6.4245E-05	0.53987	0.00032007	592.8604342896404	100.35	0.68449	100.35	100.02	100.7	0					102	38	4	0	0	0	0.016193	2	25630	25592;25630		69.105	40.023	1	707260			11446	3819	7551	7608	15709;15710	15710					0.12188580685665329
LPESLTSLLVL	11	Unmodified	_LPESLTSLLVL_					0	0	0		ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENSG00000162341|ENST00000294309|TPCN2	ENSG00000162341|ENST00000294309|TPCN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8605346679688	2	592.860472	1183.70639	0.48601	0.00028813	-0.0036499	-2.1639E-06	0.48236	0.00028597	592.8603332736914	100.17	0.70858	100.22	100.02	100.73	0.042839					108	39	4	0	0	0	0.0068688	2	25450	25450;25492		78.728	44.326	1	838740			11447	3819	7551	7608	15711;15712	15711					0.12188580685665329
LPESTHVEF	9	Unmodified	_LPESTHVEF_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5;SLFN5|p.Y803Ifs*2|1|0.2|ENSG00000166750|chr17:35265613-35265614|-/A|frameshift_variant;nc|ENSG00000166750|Q08AF3-2|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7382202148438	2	529.761289	1057.50803	0.55921	0.00029625	-0.76621	-0.00040591	-0.20699	-0.00010966	529.7609043918884	47.642	0.66174	47.722	47.557	48.219	0.080032					35	25	2	0	0	0	0.23975	1	9476	9476		14.838	0	1	159610			11448	4178	7552	7609	15713	15713					-0.018428401733444844
LPESVSIFSL	10	Unmodified	_LPESVSIFSL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.3030395507812	2	546.30279	1090.59103	0.38482	0.00021023	0.17009	9.292E-05	0.5549	0.00030315	546.3027933587877	88.676	0.59303	88.676	88.46	89.053	0					61	24	3	0	0	0	0.0010827	1	22126	22126		88.954	19.849	1	538040			11449	637	7553	7610	15714	15714					0.04935476554669549
LPESVSIFSL	10	Unmodified	_LPESVSIFSL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3029174804688	2	546.30279	1090.59103	0.37519	0.00020497	0.093526	5.1093E-05	0.46871	0.00025606	546.3027280040823	88.654	0.57279	88.686	88.436	89.009	0.032257					61	24	3	0	0	0	4.5448E-05	1	21935	21935		114.65	45.544	1	630470			11450	637	7553	7610	15715	15715					0.04935476554669549
LPETTFPAL	9	Unmodified	_LPETTFPAL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.77069091796875	2	494.771126	987.527698	0.57625	0.00028511	-0.27596	-0.00013654	0.30029	0.00014857	494.7709238592622	75.243	0.44201	75.243	75.09	75.532	0					25	16	2	0	0	0	0.21398	1	18035	18035		16.942	4.4107	1	164670			11451	5745	7554	7611	15716	15716					0.033435358374163116
LPETTFPAL	9	Unmodified	_LPETTFPAL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7712707519531	2	494.771126	987.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.265	1	75.309	74.809	75.809	0.044037								0	0	0	0.20792	1	17857	17857		16.942	4.4107	1				11452	5745	7554	7611	15717	15717					0.033435358374163116
LPEVEIISL	9	Unmodified	_LPEVEIISL_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8000183105469	2	506.799883	1011.58521	0.58839	0.00029819	-0.44143	-0.00022371	0.14696	7.448E-05	506.7995665606422	85.452	0.31616	85.477	85.314	85.631	0.025169					21	13	2	0	0	0	0.10833	1	20954	20954		30.637	0	1	101160			11453	4883	7555	7612	15718	15718					0.07988378043023658
LPEVEIISL	9	Unmodified	_LPEVEIISL_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	506.799883	1011.58521	0.46664	0.00023649	-0.040255	-2.0401E-05	0.42639	0.00021609	506.79972471183873	85.427	0.17792	85.427	85.282	85.459	0	-0.02508	0.00034709	NaN	30.637	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115870			11454	4883	7555	7612							0.07988378043023658
LPEWKENIM	9	Oxidation (M)	_LPEWKENIM(Oxidation (M))_		LPEWKENIM(1)		LPEWKENIM(48)	0	0	1		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.2919311523438	2	588.291899	1174.56925	0.33121	0.00019485	-0.18292	-0.00010761	0.14829	8.724E-05	588.2917365463686	51.816	1.0557	51.816	51.448	52.504	0					87	36	3	0	0	0	0.034936	1	10850	10850		47.594	29.448	1	240860			11455	5365	7556	7613	15719	15719		303			-0.011056514655820138
LPEWKENIM	9	Oxidation (M)	_LPEWKENIM(Oxidation (M))_		LPEWKENIM(1)		LPEWKENIM(44)	0	0	1		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.2921142578125	2	588.291899	1174.56925	0.52935	0.00031141	-0.23219	-0.0001366	0.29716	0.00017482	588.2916850006211	51.735	1.1036	51.805	51.503	52.607	0.069878					69	41	2	0	0	0	0.047066	1	10705	10705		43.982	30.076	1	190000			11456	5365	7556	7613	15720	15720		303			-0.011056514655820138
LPEYLPFVL	9	Unmodified	_LPEYLPFVL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.81298828125	2	545.812793	1089.61103	0.50775	0.00027714	-0.093652	-5.1116E-05	0.4141	0.00022602	545.812693148943	99.287	0.56755	99.287	99.091	99.659	0					124	34	5	0	0	0	0.05573	4	25322	25282;25322;25359;25395		42.095	34.102	1	3438900			11457	1708	7557	7614	15721;15722;15723;15724	15722					0.06981272285270279
LPEYLPFVL	9	Unmodified	_LPEYLPFVL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.8136596679688	2	545.812793	1089.61103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.688	1	99.688	99.188	100.19	0								0	0	0	0.23884	1	25449	25449		11.64	0	1				11458	1708	7557	7614	15725	15725					0.06981272285270279
LPEYLPFVL	9	Unmodified	_LPEYLPFVL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.8129272460938	2	545.812793	1089.61103	0.5257	0.00028693	-0.088777	-4.8456E-05	0.43692	0.00023848	545.8126839270777	99.411	0.59896	99.454	99.083	99.682	0.042831					152	40	5	0	0	0	0.092418	4	25166	25118;25166;25205;25248		34.102	34.102	1	2995500			11459	1708	7557	7614	15726;15727;15728;15729	15727					0.06981272285270279
LPEYLPFVL	9	Unmodified	_LPEYLPFVL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.66064453125	2	545.812793	1089.61103	0.49492	0.00027014	-1.2602	-0.00068782	-0.76524	-0.00041768	545.8124874047465	100.17	0.13513	100.21	100.12	100.26	0.042839					8	6	2	0	0	0	0.25579	1	25434	25434		4.3292	0	1	40295			11460	1708	7557	7614	15730	15730					0.06981272285270279
LPEYNPRTL	9	Unmodified	_LPEYNPRTL_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7997436523438	2	551.798206	1101.58186	0.33934	0.00018725	0.77877	0.00042972	1.1181	0.00061697	551.7984804999237	48.344	0.47081	48.344	48.159	48.63	0					26	15	2	0	0	0	0.12515	1	9802	9802		27.223	4.0748	1	147850			11461	4763	7558	7615	15731	15731					0.03513127989003806
LPEYNPRTL	9	Unmodified	_LPEYNPRTL_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7991943359375	2	551.798206	1101.58186	0.51935	0.00028657	0.92068	0.00050803	1.44	0.0007946	551.7984517278708	48.254	0.49268	48.334	48.114	48.607	0.080029					27	16	2	0	0	0	0.20966	1	9637	9637		17.443	0.50035	1	116720			11462	4763	7558	7615	15732	15732					0.03513127989003806
LPEYRQKES	9	Unmodified	_LPEYRQKES_					0	0	0		nc|ENSG00000176040|Q7RTY8-2|TMPRSS7;ENSG00000176040|ENST00000452346|TMPRSS7	nc|ENSG00000176040|Q7RTY8-2|TMPRSS7	nc|ENSG00000176040|Q7RTY8-2|TMPRSS7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7946166992188	2	575.29857	1148.58259	0.40101	0.0002307	2.039	0.001173	2.44	0.0014037	575.2995707779363	96.408	0.29398	96.448	96.363	96.657	0.039764					22	15	2	0	0	0	0.20194	1	24359	24359		24.021	0	1	211130			11463	4647	7559	7616	15733	15733					0.014239226380595937
LPFCGEAW	8	Unmodified	_LPFCGEAW_					0	0	0			REV__nc|ENSG00000184507|Q86Y26|NUTM1	REV__nc|ENSG00000184507|Q86Y26|NUTM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	461.5908203125	2	461.710014	921.405474	0.34911	0.00016119	0.67061	0.00030963	1.0197	0.00047081	461.71026454955955	58.093	0.30986	58.093	57.907	58.217	0					15	10	2	0	0	0	0.35759	1	12749	12749		10.183	0	1	74869	+		11464	10637	7560	7617	15734	15734					-0.05837204445799671
LPFCMVFCGY	10	Unmodified	_LPFCMVFCGY_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.7572631835938	2	590.255417	1178.49628	-0.026952	-1.5909E-05	-0.9143	-0.00053967	-0.94125	-0.00055558	590.2547766332789	30.533	0.32993	30.533	30.404	30.734	0					30	18	2	0	0	0	0.46554	1	4444	4444		1.8442	0	1	25251			11465	751	7561	7618	15735	15735					-0.08582819784191997
LPFDKETGF	9	Unmodified	_LPFDKETGF_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2662963867188	2	527.266207	1052.51786	0.35054	0.00018483	-0.266	-0.00014025	0.084533	4.4572E-05	527.2659661402299	57.876	0.64785	57.876	57.569	58.217	0					70	22	4	0	0	0	0.078774	1	12751	12751		37.075	5.8063	1	1159900			11466	2083	7562	7619	15736	15736					-0.006296521679587386
LPFDKETGF	9	Unmodified	_LPFDKETGF_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2662353515625	2	527.266207	1052.51786	0.25061	0.00013214	-0.019899	-1.0492E-05	0.23072	0.00012165	527.2661284157407	57.794	0.86571	57.862	57.547	58.413	0.068371					71	32	4	0	0	0	0.0045224	1	12580	12580		90.135	36.302	1	1100400			11467	2083	7562	7619	15737	15737					-0.006296521679587386
LPFDKETGF	9	Unmodified	_LPFDKETGF_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.266207	1052.51786	0.35054	0.00018483	-0.266	-0.00014025	0.084533	4.4572E-05	527.2659661402299	57.876	0.64785	57.876	57.569	58.217	0	0.0071533	-0.00014895	NaN	90.135	70	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1159900			11468	2083	7562	7619							-0.006296521679587386
LPFDLAIPL	9	Unmodified	_LPFDLAIPL_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|84|2|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|84|2|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|84|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.79986572265625	2	499.799686	997.584819	0.54585	0.00027282	-0.006467	-3.2322E-06	0.53939	0.00026959	499.79957787547477	93.125	0.58498	93.162	92.949	93.534	0.037369					70	25	4	0	0	0	0.25979	1	23259	23259		11.64	0	1	296620			11469	7411	7563	7620	15738	15738					0.08593003113799114
LPFFPDFVT	9	Unmodified	_LPFFPDFVT_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7811889648438	2	541.781493	1081.54843	0.66601	0.00036083	-0.1862	-0.00010088	0.47982	0.00025996	541.7812954103667	97.712	0.394	97.753	97.563	97.957	0.040855					29	19	2	0	0	0	0.29576	1	24675	24675		7.2892	0.56607	1	39601			11470	1400	7564	7621	15739	15739					0.010921262170768387
LPFGHVQF	8	Unmodified	_LPFGHVQF_					0	0	0		nc|ENSG00000243364|P52798-2|EFNA4;ENSG00000243364|ENST00000368409|EFNA4;nc|ENSG00000243364|P52798-3|EFNA4	nc|ENSG00000243364|P52798-2|EFNA4	nc|ENSG00000243364|P52798-2|EFNA4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.7413330078125	2	472.75307	943.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.898	1	62.971	62.471	63.471	0.072701								0	0	0	0.38822	1	14100	14100		9.3474	1.4373	1				11471	5660	7565	7622	15740	15740					0.017581234512363153
LPFGPEGPIPF	11	Unmodified	_LPFGPEGPIPF_					0	0	0			REV__ENST00000467622.2_1_12:110874278-110874939:-|nuORF	REV__ENST00000467622.2_1_12:110874278-110874939:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	0.73195	0.00042879	0.31668	0.00018552	1.0486	0.0006143	585.8131011178828	92.066	2.7146	92.066	91.183	93.898	0					234	103	4	0	0	0	0.19725	1	23048	23048		30.637	1.555	1	1198100	+		11472	8681	7566	7623	15741	15741					0.03407486654191416
LPFGPEGPIPF	11	Unmodified	_LPFGPEGPIPF_					0	0	0			REV__ENST00000467622.2_1_12:110874278-110874939:-|nuORF	REV__ENST00000467622.2_1_12:110874278-110874939:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	0.77806	0.0004558	0.21834	0.00012791	0.99641	0.00058371	585.8130547977717	92.028	2.9244	92.064	91.046	93.97	0.03653					223	112	4	0	0	0	0.1121	1	22945	22945		43.858	2.0187	1	947070	+		11473	8681	7566	7623	15742	15742					0.03407486654191416
LPFHSPPQEAL	11	Unmodified	_LPFHSPPQEAL_					0	0	0		ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF;ENSG00000138646|ENST00000264350|HERC5	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3250122070312	2	618.324588	1234.63462	0.0057185	3.5359E-06	0.57245	0.00035396	0.57817	0.0003575	618.3248171240813	53.88	0.63622	53.88	53.603	54.239	0					42	22	3	0	0	0	0.2586	1	11490	11490		35.612	23.372	1	193220			11474	2925	7567	7624	15743	15743					0.026690860518328918
LPFHSPPQEAL	11	Unmodified	_LPFHSPPQEAL_					0	0	0		ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF;ENSG00000138646|ENST00000264350|HERC5	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3251342773438	2	618.324588	1234.63462	0.084646	5.2339E-05	0.72193	0.00044639	0.80658	0.00049873	618.3249026029066	53.875	0.48106	53.94	53.717	54.198	0.065128					37	18	3	0	0	0	0.3016	1	11346	11346		20.581	11.836	1	144690			11475	2925	7567	7624	15744	15744					0.026690860518328918
LPFLEHLEL	9	Unmodified	_LPFLEHLEL_					0	0	0		nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;ENSG00000155034|ENST00000382368|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.813232421875	2	555.813325	1109.6121	0.52461	0.00029158	-0.1917	-0.00010655	0.33291	0.00018504	555.8130815816302	79.148	0.77526	79.148	78.846	79.621	0					67	26	4	0	0	0	0.0020132	2	19236	19182;19236		115.69	75.453	1	589740			11476	7532	7568	7625	15745;15746	15746					0.061674866541807205
LPFLEHLEL	9	Unmodified	_LPFLEHLEL_					0	0	0		nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;ENSG00000155034|ENST00000382368|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8132934570312	2	555.813325	1109.6121	0.50111	0.00027852	-0.11956	-6.6451E-05	0.38155	0.00021207	555.813138518266	79.209	0.89775	79.236	78.783	79.681	0.026436					70	31	4	0	0	0	0.0044607	2	19065	19016;19065		92.491	44.146	1	575160			11477	7532	7568	7625	15747;15748	15748					0.061674866541807205
LPFLPDSPR	9	Unmodified	_LPFLPDSPR_					0	0	0		ENST00000505104.5_1_4:9882098-10027590:-|nuORF;nc|ENSG00000109667|Q9NRM0-2|SLC2A9;ENSG00000109667|ENST00000264784|SLC2A9	ENST00000505104.5_1_4:9882098-10027590:-|nuORF	ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.3026123046875	2	521.290017	1040.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.422	1	91.457	90.957	91.957	0.035446								0	0	0	0.19116	1	22779	22779		19.439	3.5918	1				11478	1638	7569	7626	15749	15749					0.0468204682290434
LPFLVDLAL	9	Unmodified	_LPFLVDLAL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-3|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.8075866699219	2	500.807511	999.600469	0.13339	6.6805E-05	1.9195	0.00096132	2.0529	0.0010281	500.8074517106589	104.51	0.34804	104.51	104.36	104.7	0					39	32	3	0	0	0	0.25979	1	26898	26898		11.64	3.047	1	108520			11479	4525	7570	7627	15750	15750					0.10065289630847474
LPFLVDLAL	9	Unmodified	_LPFLVDLAL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-3|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.80767822265625	2	500.807511	999.600469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.42	1	104.46	103.96	104.96	0.034004								0	0	0	0.25992	1	26697	26697		7.2892	1.0834	1				11480	4525	7570	7627	15751	15751					0.10065289630847474
LPFLVDLAL	9	Unmodified	_LPFLVDLAL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-3|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	500.807511	999.600469	0.36292	0.00018175	3.8125	0.0019093	4.1754	0.0020911	501.81524259738654	104.34	0.08741	104.38	104.31	104.4	0.034004	-0.068914	0.0018232	NaN	11.64	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41752			11481	4525	7570	7627							0.10065289630847474
LPFPEVTL	8	Unmodified	_LPFPEVTL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.2629699707031	2	458.262936	914.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.269	1	84.269	83.769	84.769	0								0	0	0	0.27848	1	20763	20763		44.407	12.29	1				11482	3518	7571	7628	15752	15752					0.050644546713328964
LPFPEVTL	8	Unmodified	_LPFPEVTL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.2630615234375	2	458.262936	914.51132	0.31796	0.00014571	-0.033999	-1.5581E-05	0.28396	0.00013013	458.26287674036377	84.292	0.35661	84.314	84.037	84.393	0.021744					24	17	2	0	0	0	0.28175	2	20621	20582;20621		36.044	11.37	1	520060			11483	3518	7571	7628	15753;15754	15754					0.050644546713328964
LPFPKDASL	9	Unmodified	_LPFPKDASL_					0	0	0		nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-3|C6orf89	nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-2|C6orf89	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2793273925781	2	494.279118	986.543683	0.43792	0.00021646	-0.0046404	-2.2936E-06	0.43328	0.00021416	494.2790061015553	56.139	0.80999	56.139	55.915	56.725	0					68	29	3	0	0	0	0.004443	4	12154	12154;12206;12260;12321		93.166	28.93	1	2995500			11484	5386	7572	7629	15755;15756;15757;15758	15755					0.04987242074309961
LPFPKDASL	9	Unmodified	_LPFPKDASL_					0	0	0		nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-3|C6orf89	nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-2|C6orf89	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.27911376953125	2	494.279118	986.543683	0.32058	0.00015845	0.14675	7.2536E-05	0.46733	0.00023099	494.27908354146086	56.071	0.90191	56.137	55.923	56.825	0.066452					87	33	4	0	0	0	0.004443	3	12046	12001;12046;12095		93.166	22.032	1	2270600			11485	5386	7572	7629	15759;15760;15761	15760					0.04987242074309961
LPFSAGPTDVL	11	Unmodified	_LPFSAGPTDVL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8003540039062	2	558.800414	1115.58628	0.37223	0.000208	-0.25111	-0.00014032	0.12112	6.7683E-05	558.8000769215122	78.275	0.46703	78.275	78.073	78.54	0					35	15	3	0	0	0	0.23934	1	18958	18958		24.991	13.496	1	175680			11486	1351	7573	7630	15762	15762					0.033105924118899566
LPFSAGPTDVL	11	Unmodified	_LPFSAGPTDVL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8005981445312	2	558.800414	1115.58628	0.62848	0.00035119	-0.76896	-0.0004297	-0.14048	-7.8503E-05	558.7999261596505	78.276	0.48373	78.306	78.08	78.564	0.030159					34	16	3	0	0	0	0.27921	1	18795	18795		20.415	12.259	1	181930			11487	1351	7573	7630	15763	15763					0.033105924118899566
LPFSCFYS	8	Unmodified	_LPFSCFYS_					0	0	0			REV__ENST00000367568.4_1_6:144509016-144509238:+|nuORF	REV__ENST00000367568.4_1_6:144509016-144509238:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.216796875	2	482.217672	962.42079	-0.65183	-0.00031432	-1.9396	-0.0009353	-2.5914	-0.0012496	482.21672839903096	16.744	0.22788	16.744	16.665	16.893	0					40	27	2	0	0	0	0.53423	1	784	784		5.2307	0	1	31389	+		11488	11568	7574	7631	15764	15764					-0.061923376485992776
LPFSFIDF	8	Unmodified	_LPFSFIDF_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.25433349609375	2	493.255111	984.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.289	1	44.378	43.878	44.878	0.088924								0	0	0	0.38822	1	8459	8459		8.5933	0	1				11489	2584	7575	7632	15765	15765					0.0028016815429054986
LPFSFPDEL	9	Unmodified	_LPFSFPDEL_					0	0	0		ENSG00000163719|ENST00000296003|MTMR14	ENSG00000163719|ENST00000296003|MTMR14	ENSG00000163719|ENST00000296003|MTMR14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.269775390625	2	532.768583	1063.52261	0.366	0.000195	-1.0002	-0.00053289	-0.63423	-0.0003379	533.2689117366723	89.45	0.44415	89.482	89.301	89.745	0.032257					49	16	5	0	0	0	0.23216	1	22207	22207		14.838	3.198	1	132430			11490	3939	7576	7633	15766	15766					-0.006607680252045611
LPFSIDPYL	9	Unmodified	_LPFSIDPYL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.786865234375	2	532.786776	1063.559	0.31965	0.0001703	-0.67438	-0.0003593	-0.35474	-0.000189	532.7865604253004	90.493	0.50633	90.493	90.256	90.762	0					41	18	3	0	0	0	0.12809	1	22648	22648		26.884	5.3467	1	290780			11491	979	7577	7634	15767	15767					0.029761088715076767
LPFSIDPYL	9	Unmodified	_LPFSIDPYL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7871704101562	2	532.786776	1063.559	0.15598	8.3103E-05	-0.1492	-7.9491E-05	0.0067786	3.6116E-06	532.7865899829832	90.463	0.49733	90.497	90.329	90.827	0.034065					41	20	3	0	0	0	0.092418	1	22482	22482		34.102	12.356	1	221510			11492	979	7577	7634	15768	15768					0.029761088715076767
LPFVTMVLY	9	Unmodified	_LPFVTMVLY_					0	0	0		tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.8018798828125	2	541.801371	1081.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.919	1	97.919	97.419	98.419	0								0	0	0	0.2722	1	24913	24913		4.756	0	1				11493	13515	7578	7635	15769	15769					0.05065929896159105
LPGAASDILT	10	Unmodified	_LPGAASDILT_					0	0	0		ENST00000528499.5_1_11:130013375-130013492:+|nuORF	ENST00000528499.5_1_11:130013375-130013492:+|nuORF	ENST00000528499.5_1_11:130013375-130013492:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2664794921875	2	479.266207	956.517862	-0.24181	-0.00011589	0.37907	0.00018168	0.13727	6.5787E-05	479.2662863320121	34.374	0.27252	34.374	34.206	34.478	0					21	11	2	0	0	0	0.34138	1	5581	5581		18.146	0	1	37680			11494	7013	7579	7636	15770	15770					0.03786347832055981
LPGAVHFLPL	10	Unmodified	_LPGAVHFLPL_					0	0	0		nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8204345703125	2	532.318577	1062.6226	0.5345	0.00028453	0.11069	5.8924E-05	0.6452	0.00034345	532.3186200225749	77.009	0.24506	77.043	76.906	77.151	0.034485					21	8	3	0	0	0	0.28032	1	18394	18394		24.674	4.2203	1	203920			11495	3976	7580	7637	15771	15771					0.0937951409928246
LPGEDWVF	8	Unmodified	_LPGEDWVF_					0	0	0		ENST00000532308.5_1_8:144696774-144699659:-|nuORF;ENST00000531473.5_1_8:144696774-144698909:-|nuORF;ENSG00000104522|ENST00000425753|GFUS;ENST00000531006.1_1_8:144698735-144699659:-|nuORF;ENST00000529899.1_1_8:144698125-144699659:-|nuORF	ENST00000532308.5_1_8:144696774-144699659:-|nuORF	ENST00000532308.5_1_8:144696774-144699659:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7334899902344	2	481.734543	961.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.073	1	72.129	71.629	72.629	0.055939								0	0	0	0.38413	1	16884	16884		20.871	2.7362	1				11496	1417	7581	7638	15772	15772					-0.02773592885182552
LPGGAGMYFDS	11	Unmodified	_LPGGAGMYFDS_					0	0	0			REV__ENSG00000180318|ENST00000316824|ALX1	REV__ENSG00000180318|ENST00000316824|ALX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7479248046875	2	557.747324	1113.4801	0.36768	0.00020507	0.64842	0.00036165	1.0161	0.00056673	557.7477073959254	49.325	1.1729	49.401	48.9	50.073	0.076603					72	42	2	0	0	0	0.39378	2	9958	9958;10045		5.7319	0	1	155960	+		11497	10505	7582	7639	15773;15774	15773					-0.07210486425083218
LPGHGTSPLL	10	Unmodified	_LPGHGTSPLL_					0	0	0			REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF	REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2716064453125	2	496.282192	990.549831	0.31049	0.00015409	0.023229	1.1528E-05	0.33372	0.00016562	496.2821621481474	50.484	0.46722	50.484	50.264	50.731	0					27	16	2	0	0	0	0.36288	1	10476	10476		15.847	15.847	1	136080	+		11498	11692	7583	7640	15775	15775					0.054177603058633395
LPGHGTSPLL	10	Unmodified	_LPGHGTSPLL_					0	0	0			REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF	REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.27191162109375	2	496.282192	990.549831	0.38564	0.00019139	-0.25016	-0.00012415	0.13548	6.7237E-05	496.282006426507	50.443	0.37815	50.516	50.319	50.697	0.07312					24	12	2	0	0	0	0.43672	1	10369	10369		7.2892	0.56607	1	128120	+		11499	11692	7583	7640	15776	15776					0.054177603058633395
LPGHGTSPLL	10	Unmodified	_LPGHGTSPLL_					0	0	0			REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF	REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2716369628906	2	496.282192	990.549831	0.38564	0.00019139	-0.25016	-0.00012415	0.13548	6.7237E-05	496.282006426507	50.443	0.37815	50.516	50.319	50.697	0.07312					24	12	2	0	0	0	0.31551	1	10324	10324		11.64	11.64	1	128120	+		11500	11692	7583	7640	15777	15777					0.054177603058633395
LPGLLGGAPLT	11	Unmodified	_LPGLLGGAPLT_					0	0	0		nc|ENSG00000185736|Q9NS39-2|ADARB2	nc|ENSG00000185736|Q9NS39-2|ADARB2	nc|ENSG00000185736|Q9NS39-2|ADARB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.8089599609375	2	504.808042	1007.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.822	1	99.864	99.364	100.36	0.042839								0	0	0	0.14418	1	25335	25335		41.84	12.758	1				11501	7576	7584	7641	15778	15778					0.0980350399973986
LPGRDLLLV	9	Unmodified	_LPGRDLLLV_					0	0	0		PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant;PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant;ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant	PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.3158264160156	2	498.316035	994.617516	0.57072	0.0002844	-0.55537	-0.00027675	0.015343	7.6458E-06	498.31585089175826	63.833	0.37996	63.833	63.618	63.998	0					18	13	2	0	0	0	0.22083	1	14510	14510		16.149	0.90062	1	154360			11502	5399	7585	7642	15779	15779					0.11999210236672297
LPGRDLLLV	9	Unmodified	_LPGRDLLLV_					0	0	0		PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant;PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant;ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant	PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.316035	994.617516	0.49139	0.00024487	-0.61938	-0.00030865	-0.12799	-6.3778E-05	498.3158244236399	63.691	0.38184	63.762	63.563	63.945	0.071018	-0.035525	-4.9701E-05	NaN	16.149	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218520			11503	5399	7585	7642							0.11999210236672297
LPGRPWHSQ	9	Unmodified	_LPGRPWHSQ_					0	0	0		ENST00000478402.5_1_1:226110107-226110167:-|nuORF	ENST00000478402.5_1_1:226110107-226110167:-|nuORF	ENST00000478402.5_1_1:226110107-226110167:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.283447265625	2	539.283057	1076.55156	0.71926	0.00038788	0.11283	6.0846E-05	0.83209	0.00044873	539.2830517007035	97.319	0.66109	97.36	97.076	97.737	0.040855					64	32	3	0	0	0	0.12809	1	24536	24536		26.884	1.4843	1	307400			11504	6727	7586	7643	15780	15780					0.016348141144590045
LPHALLAVL	9	Unmodified	_LPHALLAVL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;ABCC10|p.A144Lfs*4|1|0.19|ENSG00000124574|chr6:43432410-43432410|G/-|frameshift_variant	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.8077392578125	2	473.807845	945.601138	0.17712	8.3919E-05	-0.10677	-5.059E-05	0.070343	3.3329E-05	473.80767696170585	71.113	0.47867	71.113	70.937	71.415	0					28	15	2	0	0	0	0.18003	1	16747	16747		20.871	2.7362	1	208490			11505	2262	7587	7644	15781	15781					0.1261612907056815
LPHALLAVL	9	Unmodified	_LPHALLAVL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;ABCC10|p.A144Lfs*4|1|0.19|ENSG00000124574|chr6:43432410-43432410|G/-|frameshift_variant	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.8076171875	2	473.807845	945.601138	0.25914	0.00012278	-0.2084	-9.8743E-05	0.050733	2.4038E-05	473.8075610687659	71.038	0.37817	71.097	70.91	71.288	0.058578					28	13	3	0	0	0	0.23437	1	16558	16558		14.582	2.0501	1	228490			11506	2262	7587	7644	15782	15782					0.1261612907056815
LPHANEVSQ	9	Unmodified	_LPHANEVSQ_					0	0	0		ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7522277832031	2	497.751256	993.487959	-0.047469	-2.3628E-05	1.6311	0.00081188	1.5836	0.00078825	497.7520297308219	27.395	0.48968	27.481	27.224	27.713	0.086699					55	40	2	0	0	0	0.17428	1	3394	3394		21.537	3.3906	1	139920			11507	1661	7588	7645	15783	15783					-0.009045911132830042
LPHDSGAALP	10	Unmodified	_LPHDSGAALP_					0	0	0			REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19	REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.25604248046875	2	489.256174	976.497795	0.21013	0.00010281	1.5807	0.00077338	1.7909	0.00087618	489.2568293917167	38.643	1.0057	38.73	38.385	39.391	0.08688					58	38	2	0	0	0	0.41688	1	6743	6743		10.074	0	1	60143	+		11508	8358	7589	7646	15784	15784					0.00860596892096055
LPHELVLVL	9	Unmodified	_LPHELVLVL_					0	0	0		nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.8262329101562	2	516.826235	1031.63792	0.092025	4.7561E-05	0.4609	0.00023821	0.55293	0.00028577	516.8262312035232	73.158	0.60283	73.158	73.027	73.63	0					36	21	3	0	0	0	0.1182	1	17368	17368		28.487	5.3384	1	614990			11509	669	7590	7647	15785	15785					0.12336380896454102
LPHFDESTF	9	Unmodified	_LPHFDESTF_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7542114257812	2	546.753464	1091.49238	-0.015798	-8.6378E-06	3.173	0.0017349	3.1572	0.0017262	546.7548812101693	58.517	0.63941	58.517	58.263	58.903	0					55	22	3	0	0	0	0.12809	1	12914	12914		26.884	5.137	1	259620			11510	4696	7591	7648	15786	15786					-0.04971126690384153
LPHFDESTF	9	Unmodified	_LPHFDESTF_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7536010742188	2	546.753464	1091.49238	0.23701	0.00012959	2.8227	0.0015433	3.0597	0.0016729	546.7548650959835	58.404	0.80884	58.475	58.136	58.945	0.070477					56	28	3	0	0	0	0.10067	1	12739	12739		32.305	3.8186	1	220590			11511	4696	7591	7648	15787	15787					-0.04971126690384153
LPHHAMFG	8	Unmodified	_LPHHAMFG_					0	0	0		CON__P17690	CON__P17690	CON__P17690	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.2242736816406	2	455.223623	908.432692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.585	1	92.585	92.085	93.085	0								0	0	0	0.38822	1	23290	23290		2.8892	0.58649	1			+	11512	220	7592	7649	15788	15788					-0.02518676114743812
LPHIEEDNL	9	Unmodified	_LPHIEEDNL_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2771606445312	2	540.272021	1078.52949	0.41289	0.00022308	0.86725	0.00046855	1.2801	0.00069163	540.2718019883936	50.157	0.29247	50.23	50.152	50.444	0.07312					21	9	3	0	0	0	0.23598	1	10221	10221		15.847	1.0089	1	117040			11513	492	7593	7650	15789	15789					-0.0066345514460408594
LPHILVYVL	9	Unmodified	_LPHILVYVL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1527F|1|0.06|ENSG00000175054|chr3:142513562-142513562|T/A|missense_variant;ATR|p.L1528F|1|0.05|ENSG00000175054|chr3:142513560-142513560|G/A|missense_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7766723632812	2	533.836603	1065.65865	0.41964	0.00022402	0.002039	1.0885E-06	0.42168	0.00022511	533.8364733045704	79.145	0.60815	79.145	78.928	79.536	0					34	20	2	0	0	0	0.20644	1	19190	19190		20.871	12.278	1	183400			11514	74	7594	7651	15790	15790					0.1284497127612667
LPHILVYVL	9	Unmodified	_LPHILVYVL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1527F|1|0.06|ENSG00000175054|chr3:142513562-142513562|T/A|missense_variant;ATR|p.L1528F|1|0.05|ENSG00000175054|chr3:142513560-142513560|G/A|missense_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.777099609375	2	533.836603	1065.65865	0.44159	0.00023574	-0.28945	-0.00015452	0.15214	8.122E-05	533.8363316438731	79.185	0.58719	79.212	78.932	79.519	0.026428					38	20	3	0	0	0	0.24749	1	19022	19022		9.3474	4.1168	1	163000			11515	74	7594	7651	15791	15791					0.1284497127612667
LPHISDVVL	9	Unmodified	_LPHISDVVL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.79254150390625	2	496.792392	991.570232	0.6272	0.00031159	0.0015469	7.6847E-07	0.62875	0.00031236	496.7922792289377	64.032	0.51269	64.032	63.844	64.356	0					29	17	2	0	0	0	0.21398	1	14603	14603		16.942	3.0362	1	209700			11516	1862	7595	7652	15792	15792					0.07410930965670559
LPHLEAVVI	9	Unmodified	_LPHLEAVVI_					0	0	0		nc|ENSG00000137074|Q7Z2E3-12|APTX;nc|ENSG00000137074|Q7Z2E3-13|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-5|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3-10|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3|APTX	nc|ENSG00000137074|Q7Z2E3-12|APTX	nc|ENSG00000137074|Q7Z2E3-12|APTX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.8027038574219	2	495.80276	989.590967	0.63386	0.00031427	-0.18396	-9.1209E-05	0.44989	0.00022306	495.80248942224466	65.808	0.46716	65.875	65.615	66.082	0.066872					26	17	2	0	0	0	0.26684	2	14959	14959;15005		10.824	2.2306	1	237920			11517	2830	7596	7653	15793;15794	15793					0.09575521345323068
LPHQIKDIL	9	Unmodified	_LPHQIKDIL_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.8270263671875	2	538.826766	1075.63898	0.44605	0.00024034	-0.10007	-5.3919E-05	0.34598	0.00018642	538.8267422904811	50.167	0.43724	50.24	50.007	50.444	0.07312					27	14	2	0	0	0	0.25052	1	10247	10247		8.7454	0.58988	1	135410			11518	2486	7597	7654	15795	15795					0.1041859526535518
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;ENSG00000054611|ENST00000337137|TBC1D22A;TBC1D22A|p.S167C|1|0.17|ENSG00000054611|chr22:46797483-46797483|C/G|missense_variant	TBC1D22A-GCAT|1|fusion	TBC1D22A-GCAT|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7685546875	2	469.768917	937.523281	-0.2983	-0.00014013	-0.3039	-0.00014276	-0.60219	-0.00028289	469.7687296692092	44.392	0.59828	44.392	44.18	44.779	0					43	20	3	0	0	0	0.065541	1	8615	8615		39.957	3.8303	1	294860			11519	13425	7598	7655	15796	15796					0.052020714145328384
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;ENSG00000054611|ENST00000337137|TBC1D22A;TBC1D22A|p.S167C|1|0.17|ENSG00000054611|chr22:46797483-46797483|C/G|missense_variant	TBC1D22A-GCAT|1|fusion	TBC1D22A-GCAT|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.76861572265625	2	469.768917	937.523281	-0.23739	-0.00011152	-0.17615	-8.2751E-05	-0.41354	-0.00019427	469.76875490561565	44.288	0.5754	44.376	44.16	44.735	0.088924					47	19	4	0	0	0	0.065541	1	8454	8454		39.957	11.47	1	247160			11520	13425	7598	7655	15797	15797					0.052020714145328384
LPHSGEAQL	9	Unmodified	_LPHSGEAQL_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.2481689453125	2	476.248349	950.482145	-0.28763	-0.00013699	0.051496	2.4525E-05	-0.23614	-0.00011246	476.2483885153956	33.701	1.3114	33.701	33.464	34.776	0					119	50	5	0	0	0	0.0050339	2	5379	5379;5422		82.529	21.172	1	1039600			11521	4613	7599	7656	15798;15799	15798					0.004923103750343216
LPHSGEAQL	9	Unmodified	_LPHSGEAQL_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2482604980469	2	476.248349	950.482145	-0.26219	-0.00012487	0.12276	5.8463E-05	-0.13943	-6.6405E-05	476.2483970184777	33.647	1.086	33.721	33.479	34.565	0.074322					120	44	4	0	0	0	0.0046221	2	5240	5240;5284		86.332	26.46	1	891900			11522	4613	7599	7656	15800;15801	15800					0.004923103750343216
LPHTDFTL	8	Unmodified	_LPHTDFTL_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2478332519531	2	472.247818	942.481082	-0.031538	-1.4894E-05	-0.013651	-6.4466E-06	-0.045189	-2.134E-05	472.24782823581126	56.734	1.4512	56.734	56.484	57.935	0					145	52	5	0	0	0	0.02462	6	12433	12329;12376;12433;12485;12553;12567		93.883	43.028	1	4803100			11523	4760	7600	7657	15802;15803;15804;15805;15806;15807	15804					0.007540960061533042
LPHTDFTL	8	Unmodified	_LPHTDFTL_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2478332519531	2	472.247818	942.481082	0.016845	7.9552E-06	0.03918	1.8503E-05	0.056025	2.6458E-05	472.2478245342126	56.671	1.2882	56.738	56.461	57.75	0.066452					100	47	4	0	0	0	0.028869	4	12261	12166;12215;12261;12318		93.883	34.671	1	3715100			11524	4760	7600	7657	15808;15809;15810;15811	15810					0.007540960061533042
LPHYEPIPF	9	Unmodified	_LPHYEPIPF_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1;ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.79248046875	2	556.792392	1111.57023	0.68767	0.00038289	0.72217	0.0004021	1.4098	0.00078499	556.7927254826225	93.474	0.47138	93.474	93.157	93.628	0					47	18	3	0	0	0	0.11022	1	23600	23600		30.225	3.3412	1	158490			11525	1628	7601	7658	15812	15812					0.018909309656464757
LPHYEPIPF	9	Unmodified	_LPHYEPIPF_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1;ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.792236328125	2	556.792392	1111.57023	0.73285	0.00040805	-0.64238	-0.00035767	0.090468	5.0372E-05	556.7921357746601	65.604	0.36926	65.671	65.478	65.847	0.066872					39	14	4	0	0	0	0.21398	1	14916	14916		16.942	1.0951	1	228740			11526	1628	7601	7658	15813	15813					0.018909309656464757
LPIATKEQL	9	Unmodified	_LPIATKEQL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8052062988281	2	506.8055	1011.59645	-0.26415	-0.00013387	-0.048018	-2.4336E-05	-0.31216	-0.00015821	506.8053294439471	45.535	0.65349	45.535	45.328	45.981	0					52	22	4	0	0	0	0.0046221	1	8967	8967		86.332	30.155	1	467700			11527	3265	7602	7659	15814	15814					0.0911120013714708
LPIATKEQL	9	Unmodified	_LPIATKEQL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8053894042969	2	506.8055	1011.59645	0.0038058	1.9288E-06	0.008367	4.2404E-06	0.012173	6.1693E-06	506.80536575518363	45.438	0.61655	45.526	45.321	45.938	0.087543					46	23	3	0	0	0	0.0046221	1	8810	8810		86.332	17.227	1	352750			11528	3265	7602	7659	15815	15815					0.0911120013714708
LPIDGANDLF	10	Unmodified	_LPIDGANDLF_					0	0	0		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;ENST00000492204.1_1_10:103552448-103553834:-|nuORF	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7772216796875	2	537.776939	1073.53933	0.55437	0.00029813	0.14326	7.7043E-05	0.69763	0.00037517	537.7769320547592	79.461	0.68065	79.461	79.188	79.869	0					72	23	4	0	0	0	0.00075942	3	19318	19270;19318;19365		93.166	39.333	1	1730400			11529	70	7603	7660	15816;15817;15818	15817					0.005497328607361851
LPIDGANDLF	10	Unmodified	_LPIDGANDLF_					0	0	0		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;ENST00000492204.1_1_10:103552448-103553834:-|nuORF	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7774047851562	2	537.776939	1073.53933	0.43577	0.00023435	0.26107	0.0001404	0.69684	0.00037475	537.777020237811	79.455	0.68932	79.481	79.162	79.851	0.026436					80	24	4	0	0	0	5.9292E-05	2	19154	19109;19154		103.42	49.587	1	1582100			11530	70	7603	7660	15819;15820	15820					0.005497328607361851
LPIDVTEGEVI	11	Unmodified	_LPIDVTEGEVI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8240356445312	2	592.824086	1183.63362	0.3332	0.00019753	-0.32549	-0.00019296	0.0077055	4.568E-06	592.8237898367167	76.957	0.50137	76.957	76.702	77.204	0					55	17	4	0	0	0	0.009253	1	18556	18556		70.332	55.084	1	1881200			11531	428	7604	7661	15821	15821					0.04914826892263591
LPIDVTEGEVI	11	Unmodified	_LPIDVTEGEVI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8237915039062	2	592.824086	1183.63362	0.39574	0.0002346	-0.18314	-0.00010857	0.2126	0.00012604	592.8238899666736	76.941	0.54565	76.981	76.734	77.279	0.03923					65	20	5	0	0	0	0.16959	2	18334	18334;18433		34.932	27.323	1	2070100			11532	428	7604	7661	15822;15823	15822					0.04914826892263591
LPIFLFFC	8	Unmodified	_LPIFLFFC_					0	0	0		ENST00000412278.2_3_11:66413513-66413711:+|nuORF	ENST00000412278.2_3_11:66413513-66413711:+|nuORF	ENST00000412278.2_3_11:66413513-66413711:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.27178955078125	2	500.27225	998.529947	0.18918	9.4643E-05	-1.259	-0.00062986	-1.0699	-0.00053522	500.773466456062	35.738	0.39432	35.817	35.625	36.02	0.078831					23	14	2	0	0	0	0.53257	1	5907	5907		6.3541	0	1	34064			11533	6405	7605	7662	15824	15824					0.030622930415347582
LPIFPDLQV	9	Unmodified	_LPIFPDLQV_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.3030395507812	2	521.302593	1040.59063	0.45193	0.00023559	-0.30256	-0.00015773	0.14937	7.7866E-05	521.3026805769548	91.643	1.2184	91.643	91.269	92.487	0					134	45	5	0	0	0	1.4799E-05	4	22991	22991;23038;23078;23123		144.35	55.447	1	19437000			11534	5552	7606	7663	15825;15826;15827;15828	15825					0.0719610162545905
LPIFPDLQV	9	Unmodified	_LPIFPDLQV_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.3031005859375	2	521.302593	1040.59063	0.23679	0.00012344	-0.027413	-1.4291E-05	0.20937	0.00010915	521.3028318195795	91.625	1.2167	91.66	91.284	92.5	0.035446					127	43	5	0	0	0	8.832E-06	4	22860	22821;22860;22906;22956		149.99	57.172	1	17123000			11535	5552	7606	7663	15829;15830;15831;15832	15830					0.0719610162545905
LPIKDGKLVF	10	Unmodified	_LPIKDGKLVF_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.289306640625	2	565.352617	1128.69068	0.43633	0.00024668	0.53367	0.00030171	0.97001	0.00054839	565.352355185154	53.858	0.28225	53.858	53.76	54.042	0					16	9	2	0	0	0	0.30478	1	11493	11493		21.59	3.4552	1	62877			11536	454	7607	7664	15833	15833					0.13148338959263128
LPIKDGKLVF	10	Unmodified	_LPIKDGKLVF_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3527221679688	2	565.352617	1128.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.888	1	53.953	53.453	54.453	0.065128								0	0	0	0.22212	1	11361	11361		27.223	2.5493	1				11537	454	7607	7664	15834	15834					0.13148338959263128
LPILFIDQL	9	Unmodified	_LPILFIDQL_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.326171875	2	536.326068	1070.63758	0.56018	0.00030044	-0.54501	-0.0002923	0.015169	8.1358E-06	536.3257650254018	99.287	0.36205	99.287	99.112	99.474	0					66	22	4	0	0	0	0.07372	1	25318	25318		38.176	12.776	1	404520			11538	575	7608	7665	15835	15835					0.10508961176606135
LPILFIDQL	9	Unmodified	_LPILFIDQL_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7832641601562	2	536.326068	1070.63758	0.75564	0.00040527	-0.86957	-0.00046637	-0.11393	-6.1102E-05	536.3256053623184	99.213	0.53519	99.256	99.065	99.601	0.042839					79	36	3	0	0	0	0.072867	1	25150	25150		53.833	21.527	1	543320			11539	575	7608	7665	15836	15836					0.10508961176606135
LPISCKSKID	10	Unmodified	_LPISCKSKID_					0	0	0			REV__ENST00000260641.9_1_2:65496499-65496670:+|nuORF	REV__ENST00000260641.9_1_2:65496499-65496670:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3115234375	2	552.310092	1102.60563	0.57317	0.00031657	1.0502	0.00058004	1.6234	0.00089661	552.3105045453726	96.918	0.53408	96.918	96.701	97.235	0					44	27	2	0	0	0	0.22666	1	24584	24584		30.637	1.555	1	135480	+		11540	11228	7609	7666	15837	15837					0.058432254311583165
LPISGTHLE	9	Unmodified	_LPISGTHLE_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.766357421875	2	483.766374	965.518196	-0.096428	-4.6649E-05	0.43819	0.00021198	0.34176	0.00016533	483.7664832006403	51.976	0.56055	51.976	51.713	52.274	0					40	19	4	0	0	0	0.092418	1	10954	10954		34.102	1.797	1	165870	+		11541	9026	7610	7667	15838	15838					0.03405767551896588
LPISGTHLE	9	Unmodified	_LPISGTHLE_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.766357421875	2	483.766374	965.518196	-0.0015835	-7.6605E-07	0.25451	0.00012312	0.25293	0.00012236	483.7663977827245	51.985	0.53118	52.053	51.735	52.267	0.067169					38	18	3	0	0	0	0.1182	1	10797	10797		28.487	1.6032	1	160850	+		11542	9026	7610	7667	15839	15839					0.03405767551896588
LPISIPEPVL	10	Unmodified	_LPISIPEPVL_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.76904296875	2	539.33135	1076.64815	0.53557	0.00028885	0.19573	0.00010557	0.7313	0.00039442	539.3314984408058	87.816	0.28445	87.816	87.664	87.948	0					13	9	2	0	0	0	0.31731	1	21838	21838		6.2058	1.8765	1	84534			11543	1680	7611	7668	15840	15840					0.11288943831050346
LPIVDVAEALL	11	Unmodified	_LPIVDVAEALL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8475341796875	2	576.847364	1151.68018	0.39567	0.00022824	0.15401	8.8838E-05	0.54968	0.00031708	576.8473561575518	104.37	0.30502	104.41	104.24	104.54	0.034004					49	28	4	0	0	0	0.23934	1	26654	26654		24.991	8.8419	1	293880			11544	1591	7612	7669	15841	15841					0.11040311514170753
LPIVDVAEALL	11	Unmodified	_LPIVDVAEALL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	576.847364	1151.68018	0.15543	8.9657E-05	0.36241	0.00020906	0.51784	0.00029871	576.8475085390472	104.36	0.64488	104.36	104	104.64	0	-0.022755	0.00010174	NaN	24.991	87	60	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203410			11545	1591	7612	7669							0.11040311514170753
LPIVLVGITV	10	Unmodified	_LPIVLVGITV_					0	0	0		nc|ENSG00000126903|P09131-2|SLC10A3;ENSG00000126903|ENST00000651600|SLC10A3	nc|ENSG00000126903|P09131-2|SLC10A3	nc|ENSG00000126903|P09131-2|SLC10A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.3446655273438	2	512.344261	1022.67397	0.52785	0.00027044	-0.17549	-8.9913E-05	0.35236	0.00018053	512.3440706451837	69.463	0.43517	69.463	69.296	69.732	0					27	14	2	0	0	0	0.16299	1	16253	16253		37.974	1.4678	1	196960			11546	2353	7613	7670	15842	15842					0.16353838073325733
LPIVLVGITV	10	Unmodified	_LPIVLVGITV_					0	0	0		nc|ENSG00000126903|P09131-2|SLC10A3;ENSG00000126903|ENST00000651600|SLC10A3	nc|ENSG00000126903|P09131-2|SLC10A3	nc|ENSG00000126903|P09131-2|SLC10A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.3443603515625	2	512.344261	1022.67397	0.26273	0.00013461	-0.22373	-0.00011463	0.038995	1.9979E-05	512.3440702722874	69.341	0.44429	69.404	69.308	69.752	0.062126					29	15	2	0	0	0	0.093158	2	16055	16055;16109		46.021	1.4678	1	272740			11547	2353	7613	7670	15843;15844	15843					0.16353838073325733
LPKEIVNQ	8	Unmodified	_LPKEIVNQ_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7768249511719	2	470.776742	939.538931	-0.27081	-0.00012749	0.16093	7.5764E-05	-0.10987	-5.1725E-05	470.77664763983967	32.683	0.45324	32.683	32.505	32.958	0					32	21	2	0	0	0	0.53118	1	5091	5091		7.2892	0	1	40421			11548	5151	7614	7671	15845	15845					0.0667435793156983
LPKHERSKR	9	Unmodified	_LPKHERSKR_					0	0	0		ENSG00000151914|ENST00000680361|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;ENST00000524302.1_1_6:56716117-56716639:-|nuORF;ENST00000517937.1_1_6:56599965-56716690:-|nuORF;nc|ENSG00000151914|Q03001-11|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8429565429688	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.959	1	86.959	86.459	87.459	0								0	0	0	0.23884	1	21583	21583		11.64	0	1				11549	3480	7615	7672	15846	15846					0.10422436476960684
LPKKVHPKK	9	Unmodified	_LPKKVHPKK_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.8613891601562	2	537.860944	1073.70733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.79	1	111.79	111.29	112.29	0								0	0	0	0.28527	1	28605	28605		2.0598	0	1		+		11550	9670	7616	7673	15847	15847					0.17342884635877454
LPKKVHPKK	9	Unmodified	_LPKKVHPKK_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.860595703125	2	537.860944	1073.70733	0.47624	0.00025615	-0.21521	-0.00011575	0.26103	0.0001404	537.8607245322585	109.38	0.48152	109.4	109.15	109.64	0.019402					90	54	2	0	0	0	0.3354	2	27939	27939;27943		2.0598	1.535	1	734840	+		11551	9670	7616	7673	15848;15849	15848					0.17342884635877454
LPKKVHPKK	9	Unmodified	_LPKKVHPKK_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.8612060546875	2	537.860944	1073.70733	0.47505	0.00025551	-0.029148	-1.5678E-05	0.4459	0.00023983	537.8608239947503	111.85	0.2043	111.87	111.79	111.99	0.014595					34	26	2	0	0	0	0.3182	1	28511	28511		4.3292	3.6389	1	793060	+		11552	9670	7616	7673	15850	15850					0.17342884635877454
LPKNNPPTI	9	Unmodified	_LPKNNPPTI_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.29010009765625	2	497.290017	992.565481	0.27579	0.00013715	-0.14395	-7.1582E-05	0.13184	6.5563E-05	497.28983058973256	36.244	0.69928	36.244	36.022	36.721	0					49	26	3	0	0	0	0.28472	1	6166	6166		8.7454	0	1	79756			11553	1177	7617	7674	15851	15851					0.06890046822900331
LPKNNPPTI	9	Unmodified	_LPKNNPPTI_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.28997802734375	2	497.290017	992.565481	0.27982	0.00013915	-0.079223	-3.9397E-05	0.2006	9.9755E-05	497.2898926150443	36.179	0.51379	36.261	36.023	36.536	0.081711					36	20	2	0	0	0	0.26104	1	6026	6026		11.495	0	1	57472			11554	1177	7617	7674	15852	15852					0.06890046822900331
LPKNNPPTI	9	Unmodified	_LPKNNPPTI_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	497.290017	992.565481	0.27982	0.00013915	-0.079223	-3.9397E-05	0.2006	9.9755E-05	497.2898926150443	36.179	0.51379	36.261	36.023	36.536	0.081711	0.0081752	3.5947E-05	NaN	11.495	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57472			11555	1177	7617	7674							0.06890046822900331
LPLAFEFDPEL	11	Unmodified	_LPLAFEFDPEL_					0	0	0		ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.8346557617188	2	645.834454	1289.65436	0.46523	0.00030046	-0.25063	-0.00016187	0.2146	0.00013859	645.834222291542	97.175	0.43057	97.175	96.981	97.412	0					51	20	3	0	0	0	0.091297	2	24721	24675;24721		47.594	40.493	1	367550			11556	1199	7618	7675	15853;15854	15854					0.02111417271908067
LPLAFEFDPEL	11	Unmodified	_LPLAFEFDPEL_					0	0	0		ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.8342895507812	2	645.834454	1289.65436	0.42061	0.00027164	-0.13331	-8.6097E-05	0.2873	0.00018555	645.8341294074437	97.102	0.5062	97.143	96.983	97.489	0.040848					55	24	3	0	0	0	0.033776	2	24551	24507;24551		61.602	47.987	1	228110			11557	1199	7618	7675	15855;15856	15856					0.02111417271908067
LPLCLCGV	8	Unmodified	_LPLCLCGV_					0	0	0			REV__ENST00000525883.5_1_11:6587352-6591461:+|nuORF	REV__ENST00000525883.5_1_11:6587352-6591461:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.90606689453125	2	409.21916	816.423767	0.252	0.00010312	-0.48568	-0.00019875	-0.23367	-9.5623E-05	409.21902557869385	34.719	0.52671	34.719	34.535	35.062	0					26	19	2	0	0	0	0.3576	1	5671	5671		2.8892	0	1	21705	+		11558	12324	7619	7676	15857	15857					0.008212142045522342
LPLCMHPYL	9	Unmodified	_LPLCMHPYL_					0	0	0		ENST00000573130.2_1_16:3104061-3104997:-|nuORF	ENST00000573130.2_1_16:3104061-3104997:-|nuORF	ENST00000573130.2_1_16:3104061-3104997:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7778930664062	2	543.777373	1085.54019	0.29943	0.00016282	0.012586	6.844E-06	0.31201	0.00016967	544.2783529773444	90.495	0.32346	90.495	90.384	90.708	0					18	11	2	0	0	0	0.2796	1	22682	22682		9.3474	2.6243	1	68565			11559	7198	7620	7677	15858	15858					0.0008453270445443195
LPLCMHPYL	9	Unmodified	_LPLCMHPYL_					0	0	0		ENST00000573130.2_1_16:3104061-3104997:-|nuORF	ENST00000573130.2_1_16:3104061-3104997:-|nuORF	ENST00000573130.2_1_16:3104061-3104997:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.778076171875	2	543.777373	1085.54019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.526	1	90.56	90.06	91.06	0.034065								0	0	0	0.22377	1	22507	22507		14.582	4.4311	1				11560	7198	7620	7677	15859	15859					0.0008453270445443195
LPLDEFLEH	9	Unmodified	_LPLDEFLEH_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7841186523438	2	556.784764	1111.55498	0.6774	0.00037717	-0.83066	-0.0004625	-0.15326	-8.533E-05	556.7843007837598	93.627	0.34209	93.664	93.534	93.876	0.037369					29	12	3	0	0	0	0.083504	2	23450	23450;23496		36.044	6.9084	1	226770	+		11561	10371	7621	7678	15860;15861	15860					0.003660193778159737
LPLDEFLEH	9	Unmodified	_LPLDEFLEH_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7937622070312	2	556.784764	1111.55498	0.6774	0.00037717	-0.83066	-0.0004625	-0.15326	-8.533E-05	556.7843007837598	93.627	0.34209	93.664	93.534	93.876	0.037369					29	12	3	0	0	0	0.20845	1	23422	23422		21.747	3.6117	1	226770	+		11562	10371	7621	7678	15862	15862					0.003660193778159737
LPLDLEDIF	9	Unmodified	_LPLDLEDIF_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.78955078125	2	537.789515	1073.56448	0.46186	0.00024838	-0.29163	-0.00015684	0.17023	9.1547E-05	537.789226315077	100.55	0.702	100.55	100.27	100.97	0					117	42	4	0	0	0	0.12809	3	25693	25678;25693;25756		26.884	13.759	1	884970			11563	3407	7622	7679	15863;15864;15865	15864					0.03063787663313633
LPLDLEDIF	9	Unmodified	_LPLDLEDIF_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7896118164062	2	537.789515	1073.56448	0.67775	0.00036449	-0.47212	-0.0002539	0.20563	0.00011059	537.7891333318855	100.43	0.76337	100.47	100.27	101.04	0.042839					116	45	4	0	0	0	0.011655	3	25548	25509;25548;25594		64.236	30.134	1	663140			11564	3407	7622	7679	15866;15867;15868	15867					0.03063787663313633
LPLEEETL	8	Unmodified	_LPLEEETL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2529602050781	2	472.252766	942.490978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.128	1	63.128	62.628	63.628	0								0	0	0	0.38182	1	14313	14313		24.674	3.8027	1				11565	5252	7623	7680	15869	15869					0.01743239220866144
LPLEEHYRF	9	Unmodified	_LPLEEHYRF_					0	0	0		nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000013016|ENST00000322054|EHD3;ENSG00000024422|ENST00000263277|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3114624023438	2	602.31148	1202.60841	0.32603	0.00019637	0.079119	4.7654E-05	0.40515	0.00024403	602.3114594588578	48.63	0.63572	48.63	48.453	49.088	0					42	21	3	0	0	0	0.1019	1	9908	9908		32.037	22.654	1	137130			11566	487;443;1649	7624	7681	15870	15870					0.015208168803155786
LPLEEHYRF	9	Unmodified	_LPLEEHYRF_					0	0	0		nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000013016|ENST00000322054|EHD3;ENSG00000024422|ENST00000263277|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000110047|ENST00000320631|EHD1	nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3117065429688	2	602.31148	1202.60841	0.38131	0.00022967	-0.21927	-0.00013207	0.16204	9.7599E-05	602.3113119202843	48.557	0.51721	48.637	48.442	48.959	0.080029					28	16	3	0	0	0	0.24273	1	9772	9772		13.615	7.883	1	156430			11567	487;443;1649	7624	7681	15871	15871					0.015208168803155786
LPLHDSSNNE	10	Unmodified	_LPLHDSSNNE_					0	0	0			REV__nc|ENSG00000174606|Q5VTE6-2|ANGEL2	REV__nc|ENSG00000174606|Q5VTE6-2|ANGEL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3370971679688	2	563.262185	1124.50982	0.30372	0.00017108	3.707	0.002088	4.0107	0.0022591	563.2642733239585	51.471	0.33346	51.541	51.405	51.738	0.069874					26	12	3	0	0	0	0.31667	1	10665	10665		7.9102	2.6795	1	74071	+		11568	10351	7625	7682	15872	15872					-0.047458311554009924
LPLHTYLL	8	Unmodified	_LPLHTYLL_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.70697021484375	2	485.292028	968.569503	-0.066424	-3.2235E-05	-3.4462	-0.0016724	-3.5126	-0.0017047	485.2900604156472	52.834	0.42015	52.834	52.555	52.975	0					22	14	2	0	0	0	0.35713	1	11159	11159		14.582	2.0501	1	83797	+		11569	9064	7626	7683	15873	15873					0.08396136316594038
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.8280944824219	2	468.828246	935.64194	0.15661	7.3422E-05	-0.31427	-0.00014734	-0.15766	-7.3916E-05	468.82807618713497	102.69	0.50116	102.69	102.2	102.71	0					71	33	3	0	0	0	0.11964	2	26323	26281;26323		28.173	0	1	801190	+		11570	12805	7627	7684	15874;15875	15875					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.8282470703125	2	468.828246	935.64194	0.13608	6.38E-05	-0.39662	-0.00018595	-0.26054	-0.00012215	468.82803828036725	102.75	0.95559	102.75	102.49	103.44	0					155	64	4	0	0	0	0.11964	2	26403	26403;26444		28.173	0	1	725090	+		11571	12805	7627	7684	15876;15877	15876					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.8277282714844	2	468.828246	935.64194	0.090626	4.2488E-05	-0.62099	-0.00029114	-0.53037	-0.00024865	468.8280624022451	103.49	0.14467	103.49	103.44	103.59	0					26	14	3	0	0	0	0.23437	1	26602	26602		14.582	0	1	148570	+		11572	12805	7627	7684	15878	15878					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.828125	2	468.828246	935.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.08	1	103.08	102.58	103.58	0								0	0	0	0.13254	1	26481	26481		28.173	0	1		+		11573	12805	7627	7684	15879	15879					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.8281555175781	2	468.828246	935.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.26	1	103.26	102.76	103.76	0								0	0	0	0.18155	1	26538	26538		20.871	0	1		+		11574	12805	7627	7684	15880	15880					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.8280944824219	2	468.828246	935.64194	0.13608	6.38E-05	-0.39662	-0.00018595	-0.26054	-0.00012215	468.82803828036725	102.75	0.95559	102.75	102.49	103.44	0					155	64	4	0	0	0	0.16859	1	26323	26323		28.173	0	1	725090	+		11575	12805	7627	7684	15881	15881					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.82818603515625	2	468.828246	935.64194	0.17658	8.2788E-05	-0.2592	-0.00012152	-0.082619	-3.8734E-05	468.8280881350241	102.53	0.49566	102.57	102.17	102.66	0.040916					84	34	4	0	0	0	0.081567	2	26144	26102;26144		36.466	0	1	1094300	+		11576	12805	7627	7684	15882;15883	15883					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.82818603515625	2	468.828246	935.64194	0.16997	7.9689E-05	-0.41044	-0.00019243	-0.24047	-0.00011274	468.828015612198	102.66	0.2719	102.7	102.61	102.88	0.040916					69	22	4	0	0	0	0.11964	2	26181	26181;26218		28.173	0	1	685540	+		11577	12805	7627	7684	15884;15885	15884					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3288269042969	2	468.828246	935.64194	0.16084	7.5405E-05	-0.69434	-0.00032553	-0.5335	-0.00025012	468.8280737508161	102.84	0.58066	102.88	102.87	103.45	0.040916					84	54	2	0	0	0	0.11964	2	26263	26263;26299		28.173	0	1	279960	+		11578	12805	7627	7684	15886;15887	15886					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.3288269042969	2	468.828246	935.64194	0.16084	7.5405E-05	-0.69434	-0.00032553	-0.5335	-0.00025012	468.8280737508161	102.84	0.58066	102.88	102.87	103.45	0.040916					84	54	2	0	0	0	0.16859	1	26263	26263		28.173	0	1	279960	+		11579	12805	7627	7684	15888	15888					0.17154470390164533
LPLIGVIVI	9	Unmodified	_LPLIGVIVI_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	468.828246	935.64194	0.090626	4.2488E-05	-0.62099	-0.00029114	-0.53037	-0.00024865	468.8280624022451	103.49	0.14467	103.49	103.44	103.59	0	0	0	NaN	14.582	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148570	+		11580	12805	7627	7684							0.17154470390164533
LPLKKKGIEEC	11	Unmodified	_LPLKKKGIEEC_					0	0	0			REV__nc|ENSG00000292366|P51809-2|VAMP7	REV__nc|ENSG00000292366|P51809-2|VAMP7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.3501586914062	2	629.365398	1256.71624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.819	1	19.819	19.319	20.319	0								0	0	0	0.34212	1	1445	1445		0	0	1		+		11581	12924	7628	7685	15889	15889					0.09815445419440039
LPLKKKGIEEC	11	Unmodified	_LPLKKKGIEEC_					0	0	0			REV__nc|ENSG00000292366|P51809-2|VAMP7	REV__nc|ENSG00000292366|P51809-2|VAMP7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.348876953125	2	629.365398	1256.71624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.08	1	20.08	19.58	20.58	0								0	0	0	0.34212	1	1512	1512		0	0	1		+		11582	12924	7628	7685	15890	15890					0.09815445419440039
LPLLAAEYS	9	Unmodified	_LPLLAAEYS_					0	0	0			REV__nc|ENSG00000172673|Q8N1K5-3|THEMIS	REV__nc|ENSG00000172673|Q8N1K5-3|THEMIS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7701721191406	2	488.771126	975.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.997	1	74.045	73.545	74.545	0.048546								0	0	0	0.11877	1	17472	17472		30.225	7.0764	1		+		11583	10296	7629	7686	15891	15891					0.038955358374209936
LPLLLDFSW	9	Unmodified	_LPLLLDFSW_					0	0	0			REV__nc|ENSG00000120868|O14727-3|APAF1	REV__nc|ENSG00000120868|O14727-3|APAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3111572265625	2	552.310418	1102.60628	0.57317	0.00031657	0.46003	0.00025408	1.0332	0.00057065	552.3105045453726	96.918	0.53408	96.918	96.701	97.235	0					44	27	2	0	0	0	0.14718	2	24593	24593;24633		24.674	1.5255	1	135480	+		11584	8888	7630	7687	15892;15893	15892					0.059083881425067375
LPLLLDFSW	9	Unmodified	_LPLLLDFSW_					0	0	0			REV__nc|ENSG00000120868|O14727-3|APAF1	REV__nc|ENSG00000120868|O14727-3|APAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3104248046875	2	552.310418	1102.60628	0.65254	0.0003604	0.20682	0.00011423	0.85936	0.00047463	552.3103966203521	96.876	0.41148	96.916	96.726	97.137	0.039772					35	20	2	0	0	0	0.11022	1	24436	24436		30.225	1.1432	1	216530	+		11585	8888	7630	7687	15894	15894					0.059083881425067375
LPLLLDFSW	9	Unmodified	_LPLLLDFSW_					0	0	0			REV__nc|ENSG00000120868|O14727-3|APAF1	REV__nc|ENSG00000120868|O14727-3|APAF1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	552.310418	1102.60628	0.57317	0.00031657	0.46003	0.00025408	1.0332	0.00057065	552.3105045453726	96.918	0.53408	96.918	96.701	97.235	0	0.0014112	8.3962E-05	NaN	30.225	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135480	+		11586	8888	7630	7687							0.059083881425067375
LPLLLDFSW	9	Unmodified	_LPLLLDFSW_					0	0	0			REV__nc|ENSG00000120868|O14727-3|APAF1	REV__nc|ENSG00000120868|O14727-3|APAF1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.310418	1102.60628	0.65254	0.0003604	0.20682	0.00011423	0.85936	0.00047463	552.3103966203521	96.876	0.41148	96.916	96.726	97.137	0.039772	-0.0014112	-0.00019574	NaN	30.225	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216530	+		11587	8888	7630	7687							0.059083881425067375
LPLLSLLKPLV	11	Unmodified	_LPLLSLLKPLV_					0	0	0			REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF	REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.8004150390625	2	603.415217	1204.81588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.53	1	115.54	115.04	116.04	0.013092								0	0	0	0.34212	1	29368	29368		0	0	1		+		11588	9301	7631	7688	15895	15895					0.2216663109561523
LPLLVMGMH	9	Unmodified	_LPLLVMGMH_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.78033447265625	2	505.779916	1009.54528	0.39909	0.00020185	0.7401	0.00037433	1.1392	0.00057618	505.78023535610276	87.844	0.53591	87.844	87.603	88.139	0					32	18	3	0	0	0	0.18003	1	21839	21839		20.871	1.6142	1	349960	+		11589	9183	7632	7689	15896	15896					0.04088836567086673
LPLLVMGMH	9	Unmodified	_LPLLVMGMH_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7803649902344	2	505.779916	1009.54528	0.21251	0.00010748	0.79512	0.00040216	1.0076	0.00050964	505.7802918242215	87.795	0.45249	87.825	87.628	88.081	0.030037					37	15	3	0	0	0	0.23437	2	21657	21657;21706		14.582	14.582	1	263940	+		11590	9183	7632	7689	15897;15898	15897					0.04088836567086673
LPLLVMGMH	9	Unmodified	_LPLLVMGMH_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	505.779916	1009.54528	0.39909	0.00020185	0.7401	0.00037433	1.1392	0.00057618	505.78023535610276	87.844	0.53591	87.844	87.603	88.139	0	0.0093429	-3.7197E-05	NaN	20.871	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349960	+		11591	9183	7632	7689							0.04088836567086673
LPLLVMGMH	9	Unmodified	_LPLLVMGMH_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	505.779916	1009.54528	0.21251	0.00010748	0.79512	0.00040216	1.0076	0.00050964	505.7802918242215	87.795	0.45249	87.825	87.628	88.081	0.030037	-0.0093429	1.8461E-05	NaN	20.871	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263940	+		11592	9183	7632	7689							0.04088836567086673
LPLPFLAVFL	10	Unmodified	_LPLPFLAVFL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|298|2|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|298|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3527221679688	2	565.354628	1128.6947	0.43633	0.00024668	-3.0241	-0.0017097	-2.5877	-0.001463	565.352355185154	53.858	0.28225	53.858	53.76	54.042	0					16	9	2	0	0	0	0.3939	1	11513	11513		12.532	0	1	62877	+		11593	12715	7633	7690	15899	15899					0.13550428452981578
LPLPGWTLTP	10	Unmodified	_LPLPGWTLTP_					0	0	0			REV__nc|ENSG00000248098|P12694-2|BCKDHA	REV__nc|ENSG00000248098|P12694-2|BCKDHA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7954711914062	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.284	1	24.384	23.884	24.884	0.099739								0	0	0	0.33877	1	2516	2516		1.6526	0	1		+		11594	12902	7634	7691	15900	15900					0.07411790516789551
LPLPSDTVL	9	Unmodified	_LPLPSDTVL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7789001464844	2	477.778951	953.543348	-0.060958	-2.9124E-05	0.27976	0.00013366	0.2188	0.00010454	477.77899364272673	73.965	0.68021	73.965	73.69	74.37	0					61	24	3	0	0	0	0.05573	1	17617	17617		42.095	11.87	1	1819200			11595	5715	7635	7692	15901	15901					0.0647182235445598
LPLPSDTVL	9	Unmodified	_LPLPSDTVL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.77899169921875	2	477.778951	953.543348	0.12451	5.9488E-05	0.085031	4.0626E-05	0.20954	0.00010011	477.7789132555586	73.916	0.75152	73.965	73.645	74.396	0.048546					68	27	3	0	0	0	0.030375	1	17434	17434		50.855	12.704	1	973190			11596	5715	7635	7692	15902	15902					0.0647182235445598
LPLQKLLLPSL	11	Unmodified	_LPLQKLLLPSL_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.29046630859375	3	412.275958	1233.80605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.13	1	111.13	110.63	111.63	0								0	0	0	0.33835	1	28478	28478		1.3296	0.63198	1				11597	3094	7636	7693	15903	15903					0.19849443090288332
LPLQKLLLPSL	11	Unmodified	_LPLQKLLLPSL_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	412.29034423828125	3	412.275958	1233.80605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.15	1	111.17	110.67	111.67	0.015678								0	0	0	0.33835	1	28348	28348		1.3296	0.63198	1				11598	3094	7636	7693	15904	15904					0.19849443090288332
LPLQLAITL	9	Unmodified	_LPLQLAITL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.3208312988281	2	491.320786	980.627018	0.44043	0.00021639	-0.1998	-9.8167E-05	0.24063	0.00011822	491.32057120090417	91.721	0.55266	91.721	91.435	91.988	0					30	20	2	0	0	0	0.083124	1	23032	23032		36.127	3.8215	1	418150			11599	2262	7637	7694	15905	15905					0.1359297852217196
LPLQLAITL	9	Unmodified	_LPLQLAITL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.3208923339844	2	491.320786	980.627018	0.26612	0.00013075	0.13001	6.3875E-05	0.39613	0.00019463	491.3206903845134	91.615	0.52682	91.65	91.384	91.91	0.035446					38	18	3	0	0	0	0.0569	2	22815	22815;22867		41.84	3.8656	1	319900			11600	2262	7637	7694	15906;15907	15906					0.1359297852217196
LPLQLVEK	8	Unmodified	_LPLQLVEK_					0	0	0			REV__ENSG00000135519|ENST00000257981|KCNH3	REV__ENSG00000135519|ENST00000257981|KCNH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.29705810546875	2	470.29731	938.580068	0.23729	0.0001116	0.011195	5.2649E-06	0.24848	0.00011686	470.29716836167046	57.282	0.93421	57.282	57.065	57.999	0					79	32	5	0	0	0	0.53666	1	12667	12667		3.5965	0	1	1777000	+		11601	9209	7638	7695	15908	15908					0.10832118971040927
LPLQLVEK	8	Unmodified	_LPLQLVEK_					0	0	0			REV__ENSG00000135519|ENST00000257981|KCNH3	REV__ENSG00000135519|ENST00000257981|KCNH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.29736328125	2	470.29731	938.580068	0.15651	7.3605E-05	0.041648	1.9587E-05	0.19816	9.3192E-05	470.2972354402435	57.234	0.75883	57.302	57.043	57.802	0.068375					66	28	3	0	0	0	0.53202	1	12511	12511		6.7232	0	1	1213600	+		11602	9209	7638	7695	15909	15909					0.10832118971040927
LPLRHEKLD	9	Unmodified	_LPLRHEKLD_					0	0	0			REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF	REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3275756835938	2	560.827298	1119.64004	0.17416	9.7675E-05	-1.2182	-0.00068318	-1.044	-0.00058551	560.8269055806156	45.78	0.66878	45.865	45.606	46.275	0.085617					53	25	3	0	0	0	0.32375	1	8901	8901		3.5965	0	1	80159	+		11603	10248	7639	7696	15910	15910					0.08500809634256257
LPLSEGTQTV	10	Unmodified	_LPLSEGTQTV_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7822265625	2	522.782222	1043.54989	-0.091811	-4.7997E-05	0.035817	1.8724E-05	-0.055994	-2.9272E-05	522.7821676302326	33.025	0.91824	33.025	32.63	33.548	0					81	37	4	0	0	0	0.45313	1	5262	5262		4.1895	0.59301	1	204220			11604	1562	7640	7697	15911	15911					0.02985715515183074
LPLTEHEL	8	Unmodified	_LPLTEHEL_					0	0	0		ENSG00000172578|ENST00000341319|KLHL6	ENSG00000172578|ENST00000341319|KLHL6	ENSG00000172578|ENST00000341319|KLHL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.26092529296875	2	476.260925	950.507297	0.14221	6.7727E-05	-0.17259	-8.22E-05	-0.030388	-1.4473E-05	476.26071700262906	47.569	0.72089	47.569	47.349	48.07	0					54	24	4	0	0	0	0.035128	2	9606	9556;9606		109.63	46.066	1	748340			11605	4503	7641	7698	15912;15913	15913					0.030063651776117695
LPLTEHEL	8	Unmodified	_LPLTEHEL_					0	0	0		ENSG00000172578|ENST00000341319|KLHL6	ENSG00000172578|ENST00000341319|KLHL6	ENSG00000172578|ENST00000341319|KLHL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2610168457031	2	476.260925	950.507297	0.19593	9.3315E-05	-0.037416	-1.782E-05	0.15852	7.5495E-05	476.26074312419064	47.472	0.63268	47.555	47.348	47.981	0.083096					57	24	3	0	0	0	0.035128	3	9433	9394;9433;9479		109.63	27.765	1	637260			11606	4503	7641	7698	15914;15915;15916	15915					0.030063651776117695
LPLVIEPLI	9	Unmodified	_LPLVIEPLI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.78436279296875	2	503.830986	1005.64742	0.20351	0.00010253	0.40748	0.0002053	0.61099	0.00030784	503.83104529496393	95.792	0.43228	95.792	95.654	96.087	0					32	22	3	0	0	0	0.2446	1	24229	24229		11.64	7.3111	1	73669			11607	2827	7642	7699	15917	15917					0.14482149181981185
LPLWYLDCLA	10	Unmodified	_LPLWYLDCLA_					0	0	0			REV__ENST00000433411.7_1_17:18062284-18062894:+|nuORF	REV__ENST00000433411.7_1_17:18062284-18062894:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.8153076171875	2	603.81501	1205.61547	0.52846	0.00031909	0.90615	0.00054715	1.4346	0.00086624	603.8156623246076	76.959	0.36265	76.959	76.781	77.144	0					28	12	3	0	0	0	0.3198	1	18552	18552		20.454	0	1	251640	+		11608	11856	7643	7700	15918	15918					0.020884134365132923
LPLWYLDCLA	10	Unmodified	_LPLWYLDCLA_					0	0	0			REV__ENST00000433411.7_1_17:18062284-18062894:+|nuORF	REV__ENST00000433411.7_1_17:18062284-18062894:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	603.81501	1205.61547	0.65215	0.00039378	0.65855	0.00039764	1.3107	0.00079142	603.8153549276916	76.956	0.39753	76.995	76.758	77.156	0.03923	0.018089	-0.00015809	NaN	20.454	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273640	+		11609	11856	7643	7700							0.020884134365132923
LPLYIKPM	8	Unmodified	_LPLYIKPM_					0	0	0			REV__ENST00000428888.1_1_2:166702523-166702559:-|nuORF	REV__ENST00000428888.1_1_2:166702523-166702559:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.790771484375	2	487.790807	973.56706	0.2243	0.00010941	-0.051655	-2.5197E-05	0.17265	8.4216E-05	487.7906907049716	78.727	3.2748	78.727	77.685	80.959	0					178	113	3	0	0	0	0.51887	1	19357	19357		10.183	0.83596	1	978190	+		11610	11843	7644	7701	15919	15919					0.07921964587285402
LPMFELVEL	9	Unmodified	_LPMFELVEL_					0	0	0		nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000475693.1_1_2:242607884-242611676:+|nuORF;ENST00000460211.5_1_2:242607386-242610957:+|nuORF	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7959594726562	2	545.796286	1089.57802	0.54451	0.00029719	0.37457	0.00020444	0.91909	0.00050163	545.7963623448106	98.627	0.24211	98.669	98.482	98.724	0.041931					23	14	2	0	0	0	0.15282	1	24956	24956		24.021	7.0783	1	140810			11611	4286	7645	7702	15920	15920					0.0368132217092807
LPMFWALF	8	Unmodified	_LPMFWALF_					0	0	0		ENSG00000088386|ENST00000376503|SLC15A1	ENSG00000088386|ENST00000376503|SLC15A1	ENSG00000088386|ENST00000376503|SLC15A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.77001953125	2	512.769874	1023.5252	0.59556	0.00030538	-0.14225	-7.2944E-05	0.4533	0.00023244	512.7698156617922	92.625	0.60468	92.625	92.351	92.956	0					37	22	2	0	0	0	0.41567	1	23262	23262		24.21	2.4633	1	221900			11612	1010	7646	7703	15921	15921					0.014374088987551659
LPMSLRKM	8	Unmodified	_LPMSLRKM_					0	0	0		ENST00000378953.8_2_5:131746438-131755609:+|nuORF	ENST00000378953.8_2_5:131746438-131755609:+|nuORF	ENST00000378953.8_2_5:131746438-131755609:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.27789306640625	2	488.277541	974.540528	0.40113	0.00019586	0.54969	0.0002684	0.95081	0.00046426	488.27768712249	70.432	0.46434	70.432	70.243	70.708	0					26	16	2	0	0	0	0.51415	1	16545	16545		10.824	10.824	1	192250			11613	6271	7647	7704	15922	15922					0.05223952424307754
LPNAFDGPI	9	Unmodified	_LPNAFDGPI_					0	0	0		ENST00000525209.5_1_11:35208413-35222108:+|nuORF;CD44-PDHX|6|fusion;CD44-PDHX|3|fusion;ENSG00000026508|ENST00000428726|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-9|CD44;nc|ENSG00000026508|P16070-8|CD44;nc|ENSG00000026508|P16070-16|CD44;ENST00000531118.5_1_11:35198231-35211698:+|nuORF;CD44-PDHX|2|fusion;CD44-PDHX|4|fusion;nc|ENSG00000026508|P16070-10|CD44;CD44-PDHX|7|fusion;nc|ENSG00000026508|P16070-11|CD44;nc|ENSG00000026508|P16070-13|CD44;nc|ENSG00000026508|P16070-14|CD44;nc|ENSG00000026508|P16070-12|CD44;nc|ENSG00000026508|P16070-18|CD44;nc|ENSG00000026508|P16070-15|CD44;CD44-PDHX|1|fusion	ENST00000525209.5_1_11:35208413-35222108:+|nuORF	ENST00000525209.5_1_11:35208413-35222108:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2474365234375	2	472.247818	942.481082	0.016845	7.9552E-06	0.03918	1.8503E-05	0.056025	2.6458E-05	472.2478245342126	56.671	1.2882	56.738	56.461	57.75	0.066452					100	47	4	0	0	0	0.18364	1	12372	12372		20.454	1.0146	1	3715100			11614	115	7648	7705	15923	15923					0.007540960061305668
LPNFLAVAL	9	Unmodified	_LPNFLAVAL_					0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF;nc|ENSG00000147813|Q6XQN6-3|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2919921875	2	479.292028	956.569503	0.032412	1.5535E-05	0.41103	0.00019701	0.44345	0.00021254	479.29219671544524	94.563	0.56724	94.601	94.32	94.887	0.038086					47	22	3	0	0	0	0.1182	1	23737	23737		28.487	5.3384	1	205280			11615	3343	7649	7706	15924	15924					0.0894813631659872
LPNKVDPLV	9	Unmodified	_LPNKVDPLV_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.80029296875	2	497.800217	993.585882	0.27805	0.00013841	0.020253	1.0082E-05	0.2983	0.00014849	497.8001682363543	49.737	0.54406	49.737	49.48	50.024	0					42	18	3	0	0	0	0.032194	1	10239	10239		49.554	16.769	1	286110			11616	989	7650	7707	15925	15925					0.08883217482718919
LPNKVDPLV	9	Unmodified	_LPNKVDPLV_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	497.800217	993.585882	0.26456	0.0001317	0.15714	7.8224E-05	0.4217	0.00020992	497.80018549796335	49.678	0.47388	49.752	49.534	50.007	0.073799	0.0071829	8.2543E-05	NaN	49.554	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215000			11617	989	7650	7707							0.08883217482718919
LPNLEDIYTSL	11	Unmodified	_LPNLEDIYTSL_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.3338012695312	2	639.334818	1276.65508	0.28462	0.00018197	-0.41293	-0.000264	-0.12831	-8.2033E-05	639.3344514513786	91.134	0.49456	91.134	90.911	91.405	0					25	16	2	0	0	0	0.3053	1	22841	22841		25.997	19.367	1	262930			11618	5385	7651	7708	15926	15926					0.027822119209531593
LPNLEDIYTSL	11	Unmodified	_LPNLEDIYTSL_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.3336181640625	2	639.334818	1276.65508	0.099685	6.3732E-05	-0.073893	-4.7243E-05	0.025792	1.649E-05	639.3345648246204	91.176	0.62191	91.212	90.909	91.53	0.035446					48	21	3	0	0	0	0.26831	2	22675	22675;22727		31.636	22.253	1	215810			11619	5385	7651	7708	15927;15928	15927					0.027822119209531593
LPNLVRMMM	9	Unmodified	_LPNLVRMMM_					0	0	0			REV__tr|U7STG2|U7STG2_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01398PE=4SV=1	REV__tr|U7STG2|U7STG2_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01398PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2634887695312	2	552.789958	1103.56536	0.38576	0.00021324	0.0099035	5.4746E-06	0.39566	0.00021872	552.7900025397538	87.315	0.3349	87.315	87.141	87.476	0					20	12	2	0	0	0	0.25579	1	21661	21661		4.3292	0.38484	1	73876	+		11620	13170	7652	7709	15929	15929					0.017722642353874107
LPNSIEASL	9	Unmodified	_LPNSIEASL_					0	0	0		ENST00000521825.1_1_8:143353010-143361338:-|nuORF	ENST00000521825.1_1_8:143353010-143361338:-|nuORF	ENST00000521825.1_1_8:143353010-143361338:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.25848388671875	2	472.258382	942.502212	0.37286	0.00017608	-0.39928	-0.00018856	-0.026424	-1.2479E-05	472.2581507730774	67.596	0.55461	67.659	67.438	67.992	0.063507					28	18	2	0	0	0	0.26684	1	15610	15610		10.824	3.5347	1	174060			11621	6962	7653	7710	15930	15930					0.028660613150123027
LPNVIVEVQDR	11	Unmodified	_LPNVIVEVQDR_					0	0	0		ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3626098632812	2	641.361702	1280.70885	0.184	0.00011801	0.072027	4.6195E-05	0.25603	0.00016421	641.361771151932	51.914	0.83988	51.981	51.681	52.521	0.067173					90	31	5	0	0	0	0.40055	1	10891	10891		4.1895	0	1	1808400			11622	2743	7654	7711	15931	15931					0.0797242914331946
LPPAPELDWM	10	Unmodified	_LPPAPELDWM_					0	0	0		ENST00000526463.5_1_11:118881994-118885721:+|nuORF;ENST00000583842.1_1_11:118882763-118885798:+|nuORF;ENST00000580556.5_1_11:118881994-118885036:+|nuORF;ENST00000532132.5_1_11:118881994-118886068:+|nuORF;ENSG00000186166|ENST00000334418|CENATAC	ENST00000526463.5_1_11:118881994-118885721:+|nuORF	ENST00000526463.5_1_11:118881994-118885721:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7879028320312	2	584.788992	1167.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.816	1	14.816	14.316	15.316	0								0	0	0	0.33892	1	440	440		1.4819	0.28856	1				11623	5071	7655	7712	15932	15932					-0.013647499772332594
LPPCLLNRTF	10	Unmodified	_LPPCLLNRTF_					0	0	0		ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.73828125	2	587.326076	1172.6376	0.70965	0.00041679	2.3606	0.0013864	3.0702	0.0018032	587.8288284303524	69.703	0.41489	69.703	69.518	69.933	0					18	13	2	0	0	0	0.31667	1	16347	16347		8.7454	3.8484	1	50784			11624	5041	7656	7713	15933	15933					0.05818637904962998
LPPCMLKSPKR	11	Unmodified	_LPPCMLKSPKR_					0	0	0		nc|ENSG00000104221|Q9HAW0-2|BRF2;ENSG00000104221|ENST00000220659|BRF2	nc|ENSG00000104221|Q9HAW0-2|BRF2	nc|ENSG00000104221|Q9HAW0-2|BRF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9060668945312	2	635.362136	1268.70972	0.24113	0.0001532	1.6356	0.0010392	1.8767	0.0011924	635.3646543637554	108.23	0.074463	108.25	108.21	108.28	0.022224					18	10	3	0	0	0	0.3105	1	27708	27708		5.7319	3.2334	1	2199200			11625	1403	7657	7714	15934	15934					0.08611228987024333
LPPDSHSVLP	10	Unmodified	_LPPDSHSVLP_					0	0	0			REV__ENST00000495420.5_1_15:69079601-69113141:-|nuORF	REV__ENST00000495420.5_1_15:69079601-69113141:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8176879882812	2	531.284931	1060.55531	0.66792	0.00035486	3.8786	0.0020607	4.5465	0.0024155	531.7890819136758	81.102	0.25853	81.126	80.94	81.198	0.023605					11	8	2	0	0	0	0.31288	1	19639	19639		15.847	2.3393	1	68052	+		11626	12180	7658	7715	15935	15935					0.027454390976799914
LPPEEPPVF	9	Unmodified	_LPPEEPPVF_					0	0	0			REV__nc|ENSG00000261236|Q14137-2|BOP1	REV__nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7704467773438	2	512.771126	1023.5277	0.564	0.0002892	-2.2869	-0.0011727	-1.7229	-0.00088347	512.7699939889304	92.58	0.6049	92.616	92.286	92.891	0.03653					47	21	3	0	0	0	0.1182	1	23146	23146		28.487	3.0875	1	278010	+		11627	11112	7659	7716	15936	15936					0.016875358374363714
LPPEGPESL	9	Unmodified	_LPPEGPESL_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.74505615234375	2	469.745108	937.475663	0.3572	0.00016779	-0.33214	-0.00015602	0.025057	1.1771E-05	469.7450180234566	66.266	0.41528	66.333	66.189	66.604	0.066872					26	15	2	0	0	0	0.29105	1	15187	15187		7.9102	0	1	106840	+		11628	10120	7660	7717	15937	15937					0.004423724236630733
LPPEKKQNTG	10	Unmodified	_LPPEKKQNTG_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8369750976562	2	556.308938	1110.60332	0.66162	0.00036807	-2.3506	-0.0013077	-1.689	-0.00093962	556.3076425311945	84.304	0.52727	84.325	83.866	84.393	0.021744					37	23	3	0	0	0	0.31616	1	20473	20473		10.074	1.4806	1	565210			11629	3516	7661	7718	15938	15938					0.0524451301771478
LPPELLDAPF	10	Unmodified	_LPPELLDAPF_					0	0	0		ENST00000527357.5_1_11:801679-803120:-|nuORF;ENST00000534525.5_1_11:799959-803120:-|nuORF;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1	ENST00000527357.5_1_11:801679-803120:-|nuORF	ENST00000527357.5_1_11:801679-803120:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3080444335938	2	556.305332	1110.59611	0.53339	0.00029673	4.259	0.0023693	4.7924	0.002666	556.3076547831624	83.369	0.88059	83.39	82.958	83.838	0.021744					35	30	2	0	0	0	0.45443	1	20390	20390		3.9444	0	1	63966			11630	4706	7662	7719	15939	15939					0.0452378041729844
LPPEQRKRSK	10	Unmodified	_LPPEQRKRSK_					0	0	0		nc|ENSG00000143375|Q9P2M7-2|CGN;ENSG00000143375|ENST00000271636|CGN	nc|ENSG00000143375|Q9P2M7-2|CGN	nc|ENSG00000143375|Q9P2M7-2|CGN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8687133789062	2	619.870028	1237.7255	-0.14789	-9.1675E-05	-0.81503	-0.00050521	-0.96292	-0.00059689	619.8693703180221	86.95	0.87386	86.977	86.706	87.58	0.027573					84	37	3	0	0	0	0.46656	1	21379	21379		1.6526	0.69035	1	708160			11631	3151	7663	7720	15940	15940					0.11614974819917734
LPPGCPHHL	9	Unmodified	_LPPGCPHHL_					0	0	0		ENST00000278968.10_3_11:117075278-117075362:+|nuORF	ENST00000278968.10_3_11:117075278-117075362:+|nuORF	ENST00000278968.10_3_11:117075278-117075362:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7691955566406	2	485.750005	969.485456	0.080202	3.8958E-05	0.84016	0.00040811	0.92037	0.00044707	485.75034061978954	37.966	0.26552	37.966	37.864	38.129	0					12	8	2	0	0	0	0.25416	1	6686	6686		5.2307	0	1	14043			11632	5927	7664	7721	15941	15941					-0.0005071805194347689
LPPGEWEL	8	Unmodified	_LPPGEWEL_					0	0	0		ENST00000487626.1_1_3:111904329-111904731:-|nuORF;ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA	ENST00000487626.1_1_3:111904329-111904731:-|nuORF	ENST00000487626.1_1_3:111904329-111904731:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.74237060546875	2	470.742368	939.470183	-0.09818	-4.6218E-05	0.14146	6.6589E-05	0.043275	2.0371E-05	470.74229717182607	72	1.2446	72	71.502	72.747	0					102	43	3	0	0	0	0.10563	2	17021	17021;17076		53.576	15.424	1	665400			11633	3893	7665	7722	15942;15943	15942					-0.0019730636815893376
LPPGEWEL	8	Unmodified	_LPPGEWEL_					0	0	0		ENST00000487626.1_1_3:111904329-111904731:-|nuORF;ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA	ENST00000487626.1_1_3:111904329-111904731:-|nuORF	ENST00000487626.1_1_3:111904329-111904731:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7422790527344	2	470.742368	939.470183	-0.10274	-4.8365E-05	0.16423	7.7309E-05	0.061487	2.8944E-05	470.7423062081859	71.909	1.2067	71.965	71.54	72.746	0.055939					101	42	3	0	0	0	0.46036	2	16812	16812;16862		18.135	3.2967	1	611890			11634	3893	7665	7722	15944;15945	15944					-0.0019730636815893376
LPPKPLNIF	9	Unmodified	_LPPKPLNIF_					0	0	0		ENST00000481425.5_1_7:86825954-86846082:-|nuORF;ENST00000465976.1_1_7:86827133-86832342:-|nuORF;ENSG00000135185|ENST00000257637|TMEM243	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.3265380859375	2	519.820953	1037.62735	0.29324	0.00015243	0.37376	0.00019429	0.667	0.00034672	519.8210866427684	78.471	2.0954	78.471	78.013	80.109	0					224	72	5	0	0	0	0.2796	1	18913	18913		9.3474	0	1	10386000			11635	2718	7666	7723	15946	15946					0.11004398242016578
LPPLLPLGPL	10	Unmodified	_LPPLLPLGPL_					0	0	0			REV__ENST00000559215.5_1_15:78730527-78730662:+|nuORF	REV__ENST00000559215.5_1_15:78730527-78730662:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3390502929688	2	515.338978	1028.6634	0.3713	0.00019134	0.070651	3.6409E-05	0.44195	0.00022775	515.8406047849684	82.155	0.37828	82.177	81.969	82.347	0.021866					22	13	2	0	0	0	0.45239	1	19988	19988		4.3292	0	1	136690	+		11636	12474	7667	7724	15947	15947					0.15021855418899577
LPPLTHPST	9	Unmodified	_LPPLTHPST_					0	0	0		ENST00000564798.2_2_16:56374475-56377859:+|nuORF	ENST00000564798.2_2_16:56374475-56377859:+|nuORF	ENST00000564798.2_2_16:56374475-56377859:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2082214355469	2	481.768917	961.523281	0.021546	1.038E-05	-0.027207	-1.3108E-05	-0.005661	-2.7273E-06	481.76878982085424	37.356	0.47099	37.441	37.213	37.684	0.084476					30	16	2	0	0	0	0.25644	1	6410	6410		3.9444	0	1	59755			11637	7174	7668	7725	15948	15948					0.04098071414523474
LPPLTHPST	9	Unmodified	_LPPLTHPST_					0	0	0		ENST00000564798.2_2_16:56374475-56377859:+|nuORF	ENST00000564798.2_2_16:56374475-56377859:+|nuORF	ENST00000564798.2_2_16:56374475-56377859:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	481.768917	961.523281	0.012009	5.7856E-06	-0.0060841	-2.9311E-06	0.005925	2.8545E-06	481.76892594530955	37.482	0.44629	37.482	37.283	37.729	0	0.020811	7.1891E-06	NaN	3.9444	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65259			11638	7174	7668	7725							0.04098071414523474
LPPPADLEIL	10	Unmodified	_LPPPADLEIL_					0	0	0		ENSG00000166329|ENST00000299415|CCDC182	ENSG00000166329|ENST00000299415|CCDC182	ENSG00000166329|ENST00000299415|CCDC182	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7724609375	2	539.313158	1076.61176	0.26102	0.00014077	0.99659	0.00053748	1.2576	0.00067825	539.3136560562189	86.268	0.68159	86.268	85.931	86.613	0					46	25	3	0	0	0	0.43972	1	21446	21446		6.7232	0.36906	1	126750			11639	4152	7669	7726	15949	15949					0.07652066934338109
LPPPHQPQ	8	Unmodified	_LPPPHQPQ_					0	0	0		ENST00000307403.6_1_7:155532339-155538302:+|nuORF;ENSG00000184863|ENST00000401878|RBM33	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2479553222656	2	457.248152	912.481751	0.0044393	2.0298E-06	-0.08183	-3.7416E-05	-0.07739	-3.5387E-05	457.2480402175006	32.147	1.4213	32.147	31.957	33.378	0					125	60	3	0	0	0	0.49441	1	4912	4912		13.508	4.1604	1	361570			11640	4995	7670	7727	15950	15950					0.02200935445853247
LPPPHQPQ	8	Unmodified	_LPPPHQPQ_					0	0	0		ENST00000307403.6_1_7:155532339-155538302:+|nuORF;ENSG00000184863|ENST00000401878|RBM33	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2480163574219	2	457.248152	912.481751	-0.15548	-7.1095E-05	0.047961	2.193E-05	-0.10752	-4.9165E-05	457.2481266590744	32.101	1.1897	32.175	31.979	33.169	0.073784					115	57	3	0	0	0	0.45077	2	4773	4773;4819		19.439	6.9074	1	427820			11641	4995	7670	7727	15951;15952	15951					0.02200935445853247
LPPSHPDPAF	10	Unmodified	_LPPSHPDPAF_					0	0	0		ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	ENSG00000114650|ENST00000265565|SCAP	ENSG00000114650|ENST00000265565|SCAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.271728515625	2	539.271824	1076.5291	-0.11006	-5.9354E-05	-0.24022	-0.00012955	-0.35029	-0.0001889	539.2716470742533	44.252	1.1354	44.252	43.773	44.909	0					65	39	2	0	0	0	0.34138	1	8584	8584		18.146	11.423	1	69946			11642	1850	7671	7728	15953	15953					-0.006108300738333128
LPPSHPDPAF	10	Unmodified	_LPPSHPDPAF_					0	0	0		ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	ENSG00000114650|ENST00000265565|SCAP	ENSG00000114650|ENST00000265565|SCAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2714233398438	2	539.271824	1076.5291	0.17409	9.388E-05	-0.28825	-0.00015544	-0.11416	-6.1564E-05	539.2715857343097	44.279	1.1468	44.368	43.818	44.965	0.088924					57	40	2	0	0	0	0.33099	1	8442	8442		19.257	12.534	1	71185			11643	1850	7671	7728	15954	15954					-0.006108300738333128
LPPSYPSPF	9	Unmodified	_LPPSYPSPF_					0	0	0		ENST00000264235.12_2_3:119812678-119812810:-|nuORF	ENST00000264235.12_2_3:119812678-119812810:-|nuORF	ENST00000264235.12_2_3:119812678-119812810:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.78692626953125	2	502.758018	1003.50148	0.36147	0.00018173	0.17825	8.9617E-05	0.53972	0.00027135	502.75819103384043	76.86	0.35313	76.899	76.716	77.069	0.039238					20	12	2	0	0	0	0.2491	1	18367	18367		8.5933	0	1	217600			11644	5885	7672	7729	15955	15955					-0.00012733334040149202
LPPTPCLRF	9	Unmodified	_LPPTPCLRF_					0	0	0		ENST00000314045.11_1_12:113595922-113596300:-|nuORF	ENST00000314045.11_1_12:113595922-113596300:-|nuORF	ENST00000314045.11_1_12:113595922-113596300:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.27978515625	2	522.288963	1042.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.653	1	53.653	53.153	54.153	0								0	0	0	0.24978	1	11425	11425		9.3831	1.473	1				11645	6012	7673	7730	15956	15956					0.04379294813429624
LPPVWESVT	9	Unmodified	_LPPVWESVT_					0	0	0		nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	nc|ENSG00000173805|P54257-3|HAP1	nc|ENSG00000173805|P54257-3|HAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2750244140625	2	514.276575	1026.5386	-0.16383	-8.4252E-05	-2.1578	-0.0011097	-2.3216	-0.001194	514.2758402888248	45.167	0.97721	45.167	44.831	45.808	0					84	34	4	0	0	0	0.21398	3	8846	8846;8873;8918		16.942	0	1	198020			11646	4556	7674	7731	15957;15958;15959	15957					0.026389382117031346
LPPVWESVT	9	Unmodified	_LPPVWESVT_					0	0	0		nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	nc|ENSG00000173805|P54257-3|HAP1	nc|ENSG00000173805|P54257-3|HAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2771606445312	2	514.276575	1026.5386	0.074456	3.8291E-05	-1.4703	-0.00075616	-1.3959	-0.00071787	514.2760019470253	45.107	0.89891	45.194	44.804	45.703	0.08754					69	33	3	0	0	0	0.25979	1	8685	8685		11.64	0	1	163090			11647	4556	7674	7731	15960	15960					0.026389382117031346
LPPWLQDPEL	10	Unmodified	_LPPWLQDPEL_					0	0	0		ENSG00000154124|ENST00000284274|OTULIN	ENSG00000154124|ENST00000284274|OTULIN	ENSG00000154124|ENST00000284274|OTULIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.3216552734375	2	604.321514	1206.62847	0.40923	0.0002473	-0.29613	-0.00017896	0.11309	6.8344E-05	604.3212462253183	86.327	0.68292	86.327	86.027	86.71	0					79	25	4	0	0	0	0.0027392	4	21383	21334;21383;21429;21477		82.529	53.448	1	1325500			11648	3546	7675	7732	15961;15962;15963;15964	15962					0.03342567820277509
LPPWLQDPEL	10	Unmodified	_LPPWLQDPEL_					0	0	0		ENSG00000154124|ENST00000284274|OTULIN	ENSG00000154124|ENST00000284274|OTULIN	ENSG00000154124|ENST00000284274|OTULIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.321533203125	2	604.321514	1206.62847	0.63204	0.00038195	-0.42273	-0.00025547	0.2093	0.00012649	604.3211641936093	86.303	0.66911	86.328	86.035	86.704	0.025169					81	26	4	0	0	0	0.018646	3	21228	21184;21228;21276		69.105	41.476	1	1238300			11649	3546	7675	7732	15965;15966;15967	15966					0.03342567820277509
LPQDDQKIV	9	Unmodified	_LPQDDQKIV_					0	0	0		ENST00000418609.5_1_4:186508297-186508507:-|nuORF	ENST00000418609.5_1_4:186508297-186508507:-|nuORF	ENST00000418609.5_1_4:186508297-186508507:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.3160400390625	2	528.290214	1054.56587	0.22466	0.00011869	1.1209	0.00059218	1.3456	0.00071087	528.2908463489429	39.003	0.43683	39.09	38.858	39.295	0.08688					24	16	2	0	0	0	0.25162	1	6867	6867		8.1555	1.4324	1	48583			11650	6441	7676	7733	15968	15968					0.040774217520947786
LPQFGMVI	8	Unmodified	_LPQFGMVI_					0	0	0		ENST00000510863.1_1_4:77028861-77033669:+|nuORF;nc|ENSG00000156219|Q13508-2|ART3;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3	ENST00000510863.1_1_4:77028861-77033669:+|nuORF	ENST00000510863.1_1_4:77028861-77033669:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.76019287109375	2	452.751682	903.48881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.99	1	80.99	80.49	81.49	0								0	0	0	0.3858	1	19765	19765		18.135	3.5533	1				11651	3615	7677	7734	15969	15969					0.033205320020670115
LPQGKEPGL	9	Unmodified	_LPQGKEPGL_					0	0	0		nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant;PAXIP1|p.I1044Nfs*21|1|0.27|ENSG00000157212|chr7:154946514-154946515|-/T|frameshift_variant	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.76904296875	2	469.768917	937.523281	-0.05024	-2.3601E-05	0.025157	1.1818E-05	-0.025082	-1.1783E-05	469.76883784802027	36.124	0.54362	36.206	35.993	36.536	0.081711					34	21	2	0	0	0	0.32375	1	5987	5987		3.5965	0	1	39081			11652	3652	7678	7735	15970	15970					0.052020714145328384
LPQGKEPGL	9	Unmodified	_LPQGKEPGL_					0	0	0		nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant;PAXIP1|p.I1044Nfs*21|1|0.27|ENSG00000157212|chr7:154946514-154946515|-/T|frameshift_variant	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	469.768917	937.523281	0.040908	1.9217E-05	-0.18525	-8.7025E-05	-0.14434	-6.7807E-05	469.7687635111061	36.198	0.52304	36.198	35.999	36.522	0	-0.0042162	-9.2357E-05	NaN	3.5965	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62677			11653	3652	7678	7735							0.052020714145328384
LPQHEEICL	9	Unmodified	_LPQHEEICL_					0	0	0		ENST00000481797.5_1_1:153701080-153719633:+|nuORF;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3	ENST00000481797.5_1_1:153701080-153719633:+|nuORF	ENST00000481797.5_1_1:153701080-153719633:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2708129882812	2	541.270967	1080.52738	0.21831	0.00011817	-0.015112	-8.1796E-06	0.2032	0.00010999	541.2709814324081	50.606	0.99856	50.606	50.18	51.179	0					65	34	3	0	0	0	0.048027	2	10501	10454;10501		43.772	5.5968	1	403360			11654	3175	7679	7736	15971;15972	15972					-0.00966207154078802
LPQHEEICL	9	Unmodified	_LPQHEEICL_					0	0	0		ENST00000481797.5_1_1:153701080-153719633:+|nuORF;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3	ENST00000481797.5_1_1:153701080-153719633:+|nuORF	ENST00000481797.5_1_1:153701080-153719633:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2710571289062	2	541.270967	1080.52738	0.39731	0.00021505	-0.47064	-0.00025474	-0.073325	-3.9689E-05	541.2706492350088	50.531	0.63934	50.604	50.385	51.024	0.07312					52	23	3	0	0	0	0.081383	2	10359	10310;10359		36.506	4.8496	1	355310			11655	3175	7679	7736	15973;15974	15974					-0.00966207154078802
LPQHPDVEM	9	Oxidation (M)	_LPQHPDVEM(Oxidation (M))_		LPQHPDVEM(1)		LPQHPDVEM(100)	0	0	1		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2527465820312	2	541.252774	1080.491	-0.0018442	-9.9816E-07	-0.29177	-0.00015792	-0.29362	-0.00015892	541.252679186437	33.565	1.1501	33.565	33.328	34.478	0					94	43	4	0	0	0	0.0042703	2	5363	5363;5405		99.755	53.734	1	379800			11656	3772	7680	7737	15975;15976	15975		232			-0.04603084050813777
LPQHPDVEM	9	Oxidation (M)	_LPQHPDVEM(Oxidation (M))_		LPQHPDVEM(1)		LPQHPDVEM(80)	0	0	1		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2528076171875	2	541.252774	1080.491	0.11874	6.4269E-05	-0.27006	-0.00014617	-0.15132	-8.1903E-05	541.2526312721767	33.51	0.97823	33.585	33.327	34.305	0.074326					91	39	4	0	0	0	0.005983	1	5220	5220		79.596	41.622	1	306480			11657	3772	7680	7737	15977	15977		232			-0.04603084050813777
LPQHPDVEM	9	Unmodified	_LPQHPDVEM_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2552490234375	2	533.255317	1064.49608	-0.078034	-4.1612E-05	-0.5453	-0.00029079	-0.62334	-0.0003324	533.2553777308757	43.819	0.49923	43.819	43.617	44.116	0					35	17	3	0	0	0	0.14444	1	8439	8439		24.991	12.75	1	167400			11658	3772	7680	7738	15978	15978					-0.03358780188182209
LPQHPDVEM	9	Unmodified	_LPQHPDVEM_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2554321289062	2	533.255317	1064.49608	0.16363	8.7257E-05	-0.5468	-0.00029159	-0.38317	-0.00020433	533.2552818411918	43.697	0.55041	43.786	43.609	44.16	0.088924					32	19	3	0	0	0	0.14444	1	8291	8291		24.991	11.085	1	176870			11659	3772	7680	7738	15979	15979					-0.03358780188182209
LPQLTKHL	8	Unmodified	_LPQLTKHL_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2238464355469	2	475.295102	948.575651	-0.5354	-0.00025447	0.028853	1.3714E-05	-0.50654	-0.00024076	475.29503908505325	21.857	0.51685	21.857	21.718	22.235	0					107	49	3	0	0	0	0.35759	1	1969	1969		10.074	0	1	74151	+		11660	10972	7681	7739	15980	15980					0.09930654548122675
LPQNISLQV	9	Unmodified	_LPQNISLQV_					0	0	0		ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.29559326171875	2	506.295299	1010.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.63	1	104.63	104.13	105.13	0								0	0	0	0.27935	1	26929	26929		3.2813	0	1				11661	1516	7682	7740	15981	15981					0.07118029477328491
LPQPEVILL	9	Unmodified	_LPQPEVILL_					0	0	0		ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.31829833984375	2	511.318243	1020.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.398	1	84.398	83.898	84.898	0								0	0	0	0.17708	1	20800	20800		21.537	2.28	1				11662	3071	7683	7741	15982	15982					0.11244674659576503
LPQPFPELS	9	Unmodified	_LPQPFPELS_					0	0	0		ENST00000367568.4_1_6:144508664-144508748:+|nuORF	ENST00000367568.4_1_6:144508664-144508748:+|nuORF	ENST00000367568.4_1_6:144508664-144508748:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2752685546875	2	514.276575	1026.5386	0.074456	3.8291E-05	-1.4703	-0.00075616	-1.3959	-0.00071787	514.2760019470253	45.107	0.89891	45.194	44.804	45.703	0.08754					69	33	3	0	0	0	0.19398	1	8719	8719		19.257	2.3147	1	163090			11663	6177	7684	7742	15983	15983					0.026389382117031346
LPQPQPGYV	9	Unmodified	_LPQPQPGYV_					0	0	0			REV__nc|ENSG00000102287|P78334-2|GABRE	REV__nc|ENSG00000102287|P78334-2|GABRE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2411193847656	2	499.768917	997.523281	0.22689	0.00011339	-3.0666	-0.0015326	-2.8398	-0.0014192	499.7669966678123	36.09	0.39705	36.172	35.993	36.39	0.081715					24	14	2	0	0	0	0.25579	1	6011	6011		4.3292	0	1	18874	+		11664	8448	7685	7743	15984	15984					0.024420714145207967
LPQPSSIVL	9	Unmodified	_LPQPSSIVL_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2868957519531	2	477.286943	952.559333	0.26945	0.0001286	-0.079774	-3.8075E-05	0.18968	9.053E-05	477.2867878250221	70.49	0.61613	70.49	70.17	70.786	0					55	22	3	0	0	0	0.029291	2	16557	16506;16557		51.63	17.228	1	1050700			11665	507	7686	7744	15985;15986	15986					0.08115528591372367
LPQPSSIVL	9	Unmodified	_LPQPSSIVL_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2869873046875	2	477.286943	952.559333	0.24621	0.00011751	-0.06189	-2.9539E-05	0.18432	8.7971E-05	477.28680668274853	70.347	0.67066	70.408	70.194	70.864	0.060562					66	26	4	0	0	0	0.07372	3	16376	16327;16376;16421		38.176	10.547	1	885450			11666	507	7686	7744	15987;15988;15989	15988					0.08115528591372367
LPQPTEINL	9	Unmodified	_LPQPTEINL_					0	0	0		nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;ENSG00000112031|ENST00000367233|MTRF1L;nc|ENSG00000112031|Q9UGC7-4|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.786865234375	2	512.787307	1023.56006	0.57799	0.00029638	3.9025	0.0020012	4.4805	0.0022975	513.2916717365003	67.266	0.79274	67.266	66.955	67.748	0					87	29	4	0	0	0	0.038996	3	15533	15533;15583;15590		45.74	7.5643	1	453950			11667	1739	7687	7745	15990;15991;15992	15990					0.04922323240418791
LPQQLQVAP	9	Unmodified	_LPQQLQVAP_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2904968261719	2	497.290017	992.565481	0.27579	0.00013715	-0.14395	-7.1582E-05	0.13184	6.5563E-05	497.28983058973256	36.244	0.69928	36.244	36.022	36.721	0					49	26	3	0	0	0	0.3182	1	6218	6218		4.3292	0	1	79756			11668	882	7688	7746	15993	15993					0.06890046822900331
LPQSKETLL	9	Unmodified	_LPQSKETLL_					0	0	0		ENST00000482295.1_1_9:136213358-136213517:-|nuORF;nc|ENSG00000148297|Q15528-2|MED22;ENSG00000148297|ENST00000343730|MED22	ENST00000482295.1_1_9:136213358-136213517:-|nuORF	ENST00000482295.1_1_9:136213358-136213517:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.8027954101562	2	514.802957	1027.59136	-0.088075	-4.5341E-05	0.075627	3.8933E-05	-0.012448	-6.4085E-06	514.8028946651466	44.05	0.70186	44.05	43.829	44.531	0					58	23	3	0	0	0	0.0042616	2	8541	8492;8541		100.09	30.986	1	642440			11669	3355	7689	7747	15994;15995	15995					0.0786689627452688
LPQSKETLL	9	Unmodified	_LPQSKETLL_					0	0	0		ENST00000482295.1_1_9:136213358-136213517:-|nuORF;nc|ENSG00000148297|Q15528-2|MED22;ENSG00000148297|ENST00000343730|MED22	ENST00000482295.1_1_9:136213358-136213517:-|nuORF	ENST00000482295.1_1_9:136213358-136213517:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.8029174804688	2	514.802957	1027.59136	0.038468	1.9804E-05	0.0044573	2.2946E-06	0.042925	2.2098E-05	514.8029435138775	43.944	0.66211	44.033	43.818	44.48	0.088924					61	22	4	0	0	0	0.0011184	2	8383	8331;8383		121.53	52.429	1	481010			11670	3355	7689	7747	15996;15997	15997					0.0786689627452688
LPQTSESRS	9	Unmodified	_LPQTSESRS_					0	0	0			REV__ENST00000503773.6_1_5:55236912-55256289:-|nuORF	REV__ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2620544433594	2	502.753995	1003.49344	-0.13241	-6.6571E-05	-0.27088	-0.00013618	-0.40329	-0.00020276	502.7538314420283	27.175	0.1831	27.261	27.152	27.335	0.0867					18	13	2	0	0	0	0.25458	1	3360	3360		5.7319	0.97584	1	17586	+		11671	9174	7690	7748	15998	15998					-0.008169123214656793
LPQVPDSPIF	10	Unmodified	_LPQVPDSPIF_					0	0	0		nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43;nc|ENSG00000154914|Q70EL4-2|USP43;nc|ENSG00000154914|Q70EL4-3|USP43	nc|ENSG00000154914|Q70EL4-4|USP43	nc|ENSG00000154914|Q70EL4-4|USP43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.804443359375	2	556.802957	1111.59136	0.63823	0.00035537	1.4457	0.00080499	2.084	0.0011604	556.8036792659541	99.288	0.45644	99.288	99.125	99.581	0					70	27	4	0	0	0	0.38104	1	25311	25311		13.906	0	1	493750			11672	3570	7691	7749	15999	15999					0.04002896274505474
LPQYDFVF	8	Unmodified	_LPQYDFVF_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;CIITA|p.P452S|1|0.36|ENSG00000179583|chr16:10906846-10906846|C/T|missense_variant	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7581176757812	2	514.758018	1027.50148	0.4464	0.00022979	-0.23592	-0.00012144	0.21048	0.00010835	514.757809680081	84.284	0.3208	84.306	84.037	84.358	0.021744					27	14	3	0	0	0	0.37883	1	20603	20603		28.487	5.3384	1	541420			11673	4780	7692	7750	16000	16000					-0.01116733334060882
LPQYDFVF	8	Unmodified	_LPQYDFVF_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;CIITA|p.P452S|1|0.36|ENSG00000179583|chr16:10906846-10906846|C/T|missense_variant	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	514.758018	1027.50148	0.76499	0.00039379	-0.68295	-0.00035155	0.082042	4.2232E-05	515.2592334961234	84.268	0.27954	84.268	84.02	84.299	0	-0.0188	-0.00019001	NaN	28.487	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626750			11674	4780	7692	7750							-0.01116733334060882
LPRARPWLES	10	Unmodified	_LPRARPWLES_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.8447875976562	2	612.846022	1223.67749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.62	1	109.62	109.12	110.12	0								0	0	0	0.33877	1	28207	28207		1.6526	0.32309	1		+		11675	8230	7693	7751	16001	16001					0.07459900899880267
LPRCLCPAS	9	Unmodified	_LPRCLCPAS_					0	0	0		nc|ENSG00000162888|Q96MC9|IKBKE-AS1	nc|ENSG00000162888|Q96MC9|IKBKE-AS1	nc|ENSG00000162888|Q96MC9|IKBKE-AS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.24334716796875	2	480.243698	958.472843	-0.25948	-0.00012461	-1.0544	-0.00050635	-1.3138	-0.00063096	480.2431650090327	23.361	0.3031	23.463	23.307	23.61	0.10178					45	29	2	0	0	0	0.33704	1	2255	2255		1.8442	0	1	28790			11676	7543	7694	7752	16002	16002					-0.00805497506496522
LPRDHSELF	9	Unmodified	_LPRDHSELF_					0	0	0		ENST00000394562.5_2_17:33759942-33760068:-|nuORF	ENST00000394562.5_2_17:33759942-33760068:-|nuORF	ENST00000394562.5_2_17:33759942-33760068:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.8037719726562	2	557.288005	1112.56146	0.62455	0.00034805	-1.7676	-0.00098506	-1.143	-0.000637	557.283616254821	99.406	0.37642	99.406	99.205	99.581	0					38	21	3	0	0	0	0.24749	1	25356	25356		9.3474	1.4373	1	61936			11677	6327	7695	7753	16003	16003					0.009679573291805355
LPRDKDTPLSH	11	Unmodified	_LPRDKDTPLSH_					0	0	0		ENSG00000253309|ENST00000681248|SERPINE3;nc|ENSG00000253309|A8MV23|SERPINE3	ENSG00000253309|ENST00000681248|SERPINE3	ENSG00000253309|ENST00000681248|SERPINE3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.348388671875	2	639.843676	1277.6728	0.044331	2.8365E-05	0.01409	9.0156E-06	0.058421	3.738E-05	639.8440275157009	104.56	0.37103	104.56	104.38	104.75	0					120	34	6	0	0	0	0.41693	1	26963	26963		1.3295	0	1	260980			11678	5687	7696	7754	16004	16004					0.04506971966475248
LPRDQLSAL	9	Unmodified	_LPRDQLSAL_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.274658203125	2	506.792924	1011.57129	0.11343	5.7487E-05	-0.54533	-0.00027637	-0.4319	-0.00021888	506.79279750667615	49.157	0.44929	49.157	48.917	49.367	0					25	15	2	0	0	0	0.2229	1	10066	10066		19.257	0	1	151890			11679	7542	7697	7755	16005	16005					0.06597145334569632
LPRDQMLK	8	Unmodified	_LPRDQMLK_					0	0	0		MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|10|2|sense	MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|10|2|sense	MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|10|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.78411865234375	2	500.784044	999.553536	-0.1142	-5.7191E-05	0.13	6.5103E-05	0.0158	7.9122E-06	500.78406567414504	30.611	1.0502	30.611	30.382	31.432	0					107	53	3	0	0	0	0.53202	1	4576	4576		6.7232	0.99131	1	420280			11680	7429	7698	7756	16006	16006					0.053741068080626064
LPRERSLS	8	Unmodified	_LPRERSLS_					0	0	0		ENST00000379287.3_1_6:13487318-13487489:-|nuORF	ENST00000379287.3_1_6:13487318-13487489:-|nuORF	ENST00000379287.3_1_6:13487318-13487489:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2789306640625	2	479.277441	956.540328	0.54704	0.00026218	0.2875	0.00013779	0.83454	0.00039998	479.2774383289488	81.265	0.64157	81.265	80.959	81.601	0					48	21	3	0	0	0	0.53345	1	19770	19770		5.7604	0	1	157790			11681	6274	7699	7757	16007	16007					0.06031992020314192
LPRGLSWK	8	Unmodified	_LPRGLSWK_					0	0	0			REV__ENSG00000196639|ENST00000431010|HRH1	REV__ENSG00000196639|ENST00000431010|HRH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.786865234375	2	478.787444	955.560336	-0.24081	-0.0001153	0.12108	5.797E-05	-0.11973	-5.7326E-05	478.78739904763853	44.882	0.58726	44.969	44.734	45.321	0.08754					50	22	3	0	0	0	0.53557	1	8603	8603		4.3292	0.38484	1	269760	+		11682	10826	7700	7758	16008	16008					0.08077787750949028
LPRHWAGQV	9	Unmodified	_LPRHWAGQV_					0	0	0			REV__ENST00000519560.5_1_5:168137961-168138033:-|nuORF	REV__ENST00000519560.5_1_5:168137961-168138033:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2936401367188	2	532.293425	1062.5723	0.48071	0.00025588	0.2083	0.00011087	0.68901	0.00036676	532.2934848866768	91.648	0.92432	91.648	91.319	92.243	0					93	34	4	0	0	0	0.030375	1	23011	23011		50.855	14.811	1	2211200	+		11683	12289	7701	7759	16009	16009					0.04351404494127564
LPRHWAGQV	9	Unmodified	_LPRHWAGQV_					0	0	0			REV__ENST00000519560.5_1_5:168137961-168138033:-|nuORF	REV__ENST00000519560.5_1_5:168137961-168138033:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.293425	1062.5723	0.48071	0.00025588	0.2083	0.00011087	0.68901	0.00036676	532.2934848866768	91.648	0.92432	91.648	91.319	92.243	0	-0.012298	-4.9952E-05	NaN	50.855	93	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2211200	+		11684	12289	7701	7759							0.04351404494127564
LPRHWAGQV	9	Unmodified	_LPRHWAGQV_					0	0	0			REV__ENST00000519560.5_1_5:168137961-168138033:-|nuORF	REV__ENST00000519560.5_1_5:168137961-168138033:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	532.293425	1062.5723	0.42466	0.00022604	0.31021	0.00016512	0.73487	0.00039116	532.293563196456	91.637	0.87263	91.672	91.254	92.127	0.035439	0.012298	5.854E-05	NaN	50.855	87	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1580800	+		11685	12289	7701	7759							0.04351404494127564
LPRITIKLFAP	11	Unmodified	_LPRITIKLFAP_					0	0	0		VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.37744140625	2	634.908091	1267.80163	-0.16816	-0.00010677	0.42704	0.00027113	0.25888	0.00016437	635.4099827371764	108.55	0.19991	108.55	108.42	108.62	0					75	29	3	0	0	0	0.31095	1	27984	27984		1.1933	0	1	4563800			11686	13765	7702	7760	16010	16010					0.17843978667360716
LPRITIKLFAP	11	Unmodified	_LPRITIKLFAP_					0	0	0		VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9075927734375	2	634.908091	1267.80163	0.24567	0.00015598	0.33492	0.00021265	0.5806	0.00036863	634.9084561806542	107.63	0.08287	107.66	107.58	107.66	0.022232					25	11	3	0	0	0	0.40578	1	27572	27572		2.9952	1.5133	1	13848000			11687	13765	7702	7760	16011	16011					0.17843978667360716
LPRITIKLFAP	11	Unmodified	_LPRITIKLFAP_					0	0	0		VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	634.908091	1267.80163	-0.16764	-0.00010644	0.86945	0.00055202	0.70181	0.00044559	635.410342520976	107.63	0.044121	107.63	107.59	107.63	0	-0.013064	9.6408E-05	NaN	2.9952	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19378000			11688	13765	7702	7760							0.17843978667360716
LPRNEADEL	9	Unmodified	_LPRNEADEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.769775390625	2	528.769645	1055.52474	0.19538	0.00010331	-0.17766	-9.394E-05	0.017718	9.3686E-06	528.7695756832001	36.458	0.68288	36.458	36.259	36.942	0					54	25	3	0	0	0	0.056368	2	6223	6223;6270		41.956	9.1699	1	225460			11689	1186	7703	7761	16012;16013	16012					-0.0008033928738768736
LPRNEADEL	9	Unmodified	_LPRNEADEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7697143554688	2	528.769645	1055.52474	0.21678	0.00011463	-0.024435	-1.292E-05	0.19235	0.00010171	528.7695474173207	36.372	0.53146	36.454	36.259	36.79	0.081711					49	21	3	0	0	0	0.1646	1	6080	6080		22.658	10.417	1	211740			11690	1186	7703	7761	16014	16014					-0.0008033928738768736
LPRRPAWA	8	Unmodified	_LPRRPAWA_					0	0	0			REV__ENST00000455127.6_2_17:79780443-79780851:-|nuORF	REV__ENST00000455127.6_2_17:79780443-79780851:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2301025390625	2	483.785236	965.555919	0.039031	1.8882E-05	-1.6298	-0.00078845	-1.5907	-0.00076957	483.7843384552475	37.561	0.29959	37.645	37.505	37.805	0.084476					12	9	2	0	0	0	0.3576	1	6447	6447		2.3027	0	1	15770	+		11691	11942	7704	7762	16015	16015					0.07176323328019407
LPRVCPPASLF	11	Unmodified	_LPRVCPPASLF_					0	0	0			REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF	REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3344116210938	2	600.333901	1198.65325	0.35653	0.00021404	0.41011	0.0002462	0.76664	0.00046024	600.3340481319144	88.642	1.3839	88.674	88.463	89.846	0.032257					95	55	2	0	0	0	0.38057	3	22026	21879;22026;22123		8.7454	5.1489	1	607940	+		11692	11211	7705	7763	16016;16017;16018	16017					0.06186924421990625
LPSAFYIKL	9	Unmodified	_LPSAFYIKL_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.3131713867188	2	526.312961	1050.61137	0.35901	0.00018895	0.24302	0.0001279	0.60203	0.00031686	526.3129933370437	71.371	0.73109	71.371	71.158	71.889	0					78	25	4	0	0	0	0.0010793	4	16842	16793;16842;16887;16933		122.18	69.911	1	2422700			11693	2656	7706	7764	16019;16020;16021;16022	16020					0.08808692005140983
LPSAFYIKL	9	Unmodified	_LPSAFYIKL_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3135375976562	2	526.312961	1050.61137	0.31335	0.00016492	0.22627	0.00011909	0.53962	0.00028401	526.3129909849529	71.302	0.76118	71.361	71.108	71.869	0.058578					77	27	4	0	0	0	0.0028323	3	16610	16610;16661;16711		110.67	62.329	1	2259000			11694	2656	7706	7764	16023;16024;16025	16023					0.08808692005140983
LPSAPDPRLP	10	Unmodified	_LPSAPDPRLP_					0	0	0		ENST00000331203.6_1_2:112896141-112922743:+|nuORF	ENST00000331203.6_1_2:112896141-112922743:+|nuORF	ENST00000331203.6_1_2:112896141-112922743:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8005981445312	2	531.800749	1061.58694	-0.11336	-6.0283E-05	-0.089926	-4.7823E-05	-0.20328	-0.00010811	531.8005166668876	44.098	0.96822	44.098	43.638	44.606	0					71	33	3	0	0	0	0.32016	1	8487	8487		20.415	0	1	221580			11695	6056	7707	7765	16026	16026					0.058614318515992636
LPSAPERLAL	10	Unmodified	_LPSAPERLAL_					0	0	0		nc|ENSG00000269858|Q96KS0-2|EGLN2;ENSG00000269858|ENST00000303961|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.81640625	2	533.816399	1065.61824	0.43746	0.00023352	-0.0059033	-3.1513E-06	0.43156	0.00023037	533.8165210977058	55.906	0.25262	55.906	55.782	56.035	0					13	8	3	0	0	0	0.39071	1	12129	12129		12.873	2.722	1	76003			11696	5735	7708	7766	16027	16027					0.08806004885695984
LPSCPFGLCF	10	Unmodified	_LPSCPFGLCF_					0	0	0			REV__ENST00000525088.5_1_11:67202187-67202637:+|nuORF	REV__ENST00000525088.5_1_11:67202187-67202637:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2525024414062	2	542.253731	1082.49291	0.36967	0.00020046	-2.7826	-0.0015089	-2.413	-0.0013084	542.2521446266136	61.446	0.36137	61.446	61.135	61.496	0					18	12	2	0	0	0	0.19659	1	13782	13782		34.102	3.4659	1	385960	+		11697	12320	7709	7767	16028	16028					-0.04503746566524569
LPSDTRLVL	9	Unmodified	_LPSDTRLVL_					0	0	0		nc|ENSG00000149131|P05155-2|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.3031311035156	2	507.303124	1012.5917	0.31904	0.00016185	-0.0019123	-9.7012E-07	0.31712	0.00016088	507.3030554669718	55.895	0.84945	55.895	55.635	56.484	0					62	30	4	0	0	0	0.0068798	2	12121	12074;12121		76.825	22.992	1	1125600			11698	3385	7710	7768	16029;16030	16030					0.08590315994376851
LPSDTRLVL	9	Unmodified	_LPSDTRLVL_					0	0	0		nc|ENSG00000149131|P05155-2|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.3031311035156	2	507.303124	1012.5917	0.25804	0.00013091	0.065808	3.3384E-05	0.32385	0.00016429	507.30306257778904	55.836	0.68627	55.901	55.646	56.333	0.065128					58	25	4	0	0	0	0.0068798	2	11966	11923;11966		76.825	22.992	1	834900			11699	3385	7710	7768	16031;16032	16032					0.08590315994376851
LPSEDPYQL	9	Unmodified	_LPSEDPYQL_					0	0	0		ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.26123046875	2	531.261122	1060.50769	0.34544	0.00018352	0.51357	0.00027284	0.85901	0.00045636	531.2612720849289	61.468	1.1222	61.468	61.162	62.285	0					104	53	3	0	0	0	0.02293	5	13804	13759;13804;13843;13913;13956		56.177	39.95	1	1978700			11700	1546	7711	7769	16033;16034;16035;16036;16037	16034					-0.020142598931897737
LPSEDPYQL	9	Unmodified	_LPSEDPYQL_					0	0	0		ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2613525390625	2	531.261122	1060.50769	0.37562	0.00019955	0.57732	0.00030671	0.95294	0.00050626	531.2613146207923	61.408	1.0322	61.482	61.143	62.175	0.073421					96	52	4	0	0	0	0.02293	4	13639	13597;13639;13678;13745		56.177	30.778	1	1602800			11701	1546	7711	7769	16038;16039;16040;16041	16039					-0.020142598931897737
LPSEEDPAL	9	Unmodified	_LPSEEDPAL_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.739990234375	2	485.740022	969.465492	-0.042134	-2.0466E-05	0.11184	5.4323E-05	0.069702	3.3857E-05	485.7400175122055	52.898	0.43482	52.898	52.704	53.139	0					37	15	3	0	0	0	0.23216	1	11202	11202		14.838	4.0143	1	211270			11702	1846	7712	7770	16042	16042					-0.020462353015886947
LPSEEDPAL	9	Unmodified	_LPSEEDPAL_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7398376464844	2	485.740022	969.465492	0.11667	5.667E-05	0.0727	3.5313E-05	0.18937	9.1984E-05	485.7399514122392	52.866	0.43512	52.931	52.693	53.128	0.06543					41	18	3	0	0	0	0.18364	1	11048	11048		20.454	8.8133	1	173770			11703	1846	7712	7770	16043	16043					-0.020462353015886947
LPSEHQTIL	9	Unmodified	_LPSEHQTIL_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.284912109375	2	519.284931	1036.55531	-0.026355	-1.3686E-05	0.42557	0.00022099	0.39922	0.00020731	519.2848620550723	43.81	0.88094	43.899	43.658	44.539	0.088921					115	30	6	0	0	0	0.018465	1	8335	8335		59.368	27.063	1	1263500			11704	2798	7713	7771	16044	16044					0.03849439097666618
LPSEHQTIL	9	Unmodified	_LPSEHQTIL_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	519.284931	1036.55531	-0.10841	-5.6297E-05	0.29809	0.00015479	0.18967	9.8494E-05	519.2847477905267	43.934	0.81075	43.934	43.691	44.502	0	0.017847	-6.18E-05	NaN	59.368	121	27	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1428300			11705	2798	7713	7771							0.03849439097666618
LPSFIFGRKS	10	Unmodified	_LPSFIFGRKS_					0	0	0			REV__ENST00000537595.1_10:102122289-102122870:+|nuORF	REV__ENST00000537595.1_10:102122289-102122870:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.342529296875	2	576.332216	1150.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.455	1	56.522	56.022	57.022	0.066452								0	0	0	0.32828	1	12144	12144		13.906	3.0821	1		+		11706	12390	7714	7772	16045	16045					0.08057997639662062
LPSGATLSSL	10	Unmodified	_LPSGATLSSL_					0	0	0		ENST00000564147.1_1_16:68270758-68271348:-|nuORF	ENST00000564147.1_1_16:68270758-68271348:-|nuORF	ENST00000564147.1_1_16:68270758-68271348:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.266357421875	2	473.266207	944.517862	-0.2573	-0.00012177	0.14665	6.9405E-05	-0.11064	-5.2364E-05	473.2662107658272	33.973	0.56622	33.973	33.771	34.337	0					60	21	4	0	0	0	0.12944	1	5455	5455		41.84	0	1	324910			11707	7171	7715	7773	16046	16046					0.04338347832049294
LPSGATLSSL	10	Unmodified	_LPSGATLSSL_					0	0	0		ENST00000564147.1_1_16:68270758-68271348:-|nuORF	ENST00000564147.1_1_16:68270758-68271348:-|nuORF	ENST00000564147.1_1_16:68270758-68271348:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.26617431640625	2	473.266207	944.517862	-0.2531	-0.00011978	0.27697	0.00013108	0.023863	1.1293E-05	473.2662801590141	33.928	0.52801	34.004	33.808	34.336	0.076244					55	21	3	0	0	0	0.046227	1	5328	5328		58.679	0	1	240750			11708	7171	7715	7773	16047	16047					0.04338347832049294
LPSGEDYNL	9	Unmodified	_LPSGEDYNL_					0	0	0		nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.23748779296875	2	504.237647	1006.46074	0.43882	0.00022127	-0.08418	-4.2447E-05	0.35464	0.00017882	504.23742787471934	55.219	0.48555	55.284	55.089	55.574	0.065128					29	17	2	0	0	0	0.16392	2	11755	11755;11804		22.736	4.6013	1	158010			11709	4083	7716	7774	16048;16049	16048					-0.042231194443274944
LPSGEDYNL	9	Unmodified	_LPSGEDYNL_					0	0	0		nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.237647	1006.46074	0.444	0.00022388	-0.014929	-7.5276E-06	0.42907	0.00021635	504.2374655865537	55.245	0.51102	55.245	55.04	55.551	0	-0.019752	3.1575E-05	NaN	22.736	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195970			11710	4083	7716	7774							-0.042231194443274944
LPSHRRRHRR	10	Unmodified	_LPSHRRRHRR_					0	0	0			REV__ENST00000330070.5_1_17:46621981-46622053:-|nuORF	REV__ENST00000330070.5_1_17:46621981-46622053:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.6082763671875	3	457.60821	1369.8028	0.51949	0.00023773	0.051457	2.3547E-05	0.57095	0.00026127	457.6081646315243	93.999	1.9431	93.999	93.462	95.405	0					187	87	4	0	0	0	0.47119	2	24009	24009;24055		0.77653	0.27058	1	658680	+		11711	11421	7717	7775	16050;16051	16050					0.13269050599456023
LPSHRRRHRR	10	Unmodified	_LPSHRRRHRR_					0	0	0			REV__ENST00000330070.5_1_17:46621981-46622053:-|nuORF	REV__ENST00000330070.5_1_17:46621981-46622053:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.6083984375	3	457.60821	1369.8028	0.23022	0.00010535	0.14797	6.7711E-05	0.37819	0.00017306	457.60826892319983	94.226	2.1515	94.265	93.255	95.407	0.038086					178	93	3	0	0	0	0.47119	1	23866	23866		0.77653	0.77653	1	691320	+		11712	11421	7717	7775	16052	16052					0.13269050599456023
LPSKAKNF	8	Unmodified	_LPSKAKNF_					0	0	0			REV__ENST00000457270.5_1_22:22311488-22312070:-|nuORF	REV__ENST00000457270.5_1_22:22311488-22312070:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.7662048339844	2	452.766178	903.517802	0.30163	0.00013657	-0.32115	-0.00014541	-0.019523	-8.8395E-06	452.7659561484441	50.633	0.65829	50.633	50.348	51.006	0					33	22	2	0	0	0	0.28175	1	10514	10514		36.044	1.9418	1	93221	+		11713	8365	7718	7776	16053	16053					0.0621839262270214
LPSKAKNF	8	Unmodified	_LPSKAKNF_					0	0	0			REV__ENST00000457270.5_1_22:22311488-22312070:-|nuORF	REV__ENST00000457270.5_1_22:22311488-22312070:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	452.766178	903.517802	0.30163	0.00013657	-0.32115	-0.00014541	-0.019523	-8.8395E-06	452.7659561484441	50.633	0.65829	50.633	50.348	51.006	0	0.0058426	-2.025E-05	NaN	36.044	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93221	+		11714	8365	7718	7776							0.0621839262270214
LPSLDFELRQ	10	Unmodified	_LPSLDFELRQ_					0	0	0			REV__ENSG00000149313|ENST00000278618|AASDHPPT	REV__ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.2680053710938	2	609.32987	1216.64519	0.18454	0.00011244	-0.27668	-0.00016859	-0.092138	-5.6143E-05	609.3294262296051	35.445	0.27517	35.445	35.314	35.589	0					18	9	3	0	0	0	0.31747	1	5954	5954		5.7319	0	1	32318	+		11715	9612	7719	7777	16054	16054					0.04553068706218255
LPSLDFELRQ	10	Unmodified	_LPSLDFELRQ_					0	0	0			REV__ENSG00000149313|ENST00000278618|AASDHPPT	REV__ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.2681884765625	2	609.32987	1216.64519	0.32446	0.0001977	-0.17655	-0.00010758	0.14791	9.0125E-05	609.3298052269195	35.446	0.30319	35.525	35.322	35.625	0.078827					19	11	2	0	0	0	0.31747	1	5819	5819		5.7319	5.7319	1	30486	+		11716	9612	7719	7777	16055	16055					0.04553068706218255
LPSLEFISL	9	Unmodified	_LPSLEFISL_					0	0	0		ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;nc|ENSG00000145868|Q6PIJ6-3|FBXO38	ENSG00000145868|ENST00000340253|FBXO38	ENSG00000145868|ENST00000340253|FBXO38	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7950439453125	2	509.794601	1017.57465	0.46883	0.00023901	0.10605	5.4064E-05	0.57488	0.00029307	509.7945851393379	93.756	0.39237	93.756	93.548	93.941	0					32	15	3	0	0	0	0.031665	1	23619	23619		49.933	11.959	1	931690			11717	3266	7720	7778	16056	16056					0.06656395388586134
LPSLEFISL	9	Unmodified	_LPSLEFISL_					0	0	0		ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;nc|ENSG00000145868|Q6PIJ6-3|FBXO38	ENSG00000145868|ENST00000340253|FBXO38	ENSG00000145868|ENST00000340253|FBXO38	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.79486083984375	2	509.794601	1017.57465	0.41077	0.00020941	0.13068	6.6621E-05	0.54145	0.00027603	509.794576118196	93.713	0.47545	93.75	93.534	94.009	0.037369					39	21	3	0	0	0	0.10264	1	23461	23461		43.858	5.8843	1	668800			11718	3266	7720	7778	16057	16057					0.06656395388586134
LPSLSAHEL	9	Unmodified	_LPSLSAHEL_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.76654052734375	2	483.766374	965.518196	-0.096428	-4.6649E-05	0.43819	0.00021198	0.34176	0.00016533	483.7664832006403	51.976	0.56055	51.976	51.713	52.274	0					40	19	4	0	0	0	0.031665	1	10903	10903		49.933	1.5872	1	165870			11719	2337;7495	7721	7779	16058	16058					0.03405767551907957
LPSLSAHEL	9	Unmodified	_LPSLSAHEL_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7664489746094	2	483.766374	965.518196	-0.0015835	-7.6605E-07	0.25451	0.00012312	0.25293	0.00012236	483.7663977827245	51.985	0.53118	52.053	51.735	52.267	0.067169					38	18	3	0	0	0	0.02293	1	10755	10755		56.177	16.22	1	160850			11720	2337;7495	7721	7779	16059	16059					0.03405767551907957
LPSNDSSKF	9	Unmodified	_LPSNDSSKF_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7454528808594	2	497.745639	993.476725	-0.023227	-1.1561E-05	-0.36837	-0.00018335	-0.3916	-0.00019492	497.74542760743213	32.233	0.74115	32.233	31.977	32.718	0					72	32	3	0	0	0	0.034744	2	4938	4938;4986		47.732	31.885	1	147520			11721	1586	7722	7780	16060;16061	16060					-0.020274132074177942
LPSNDSSKF	9	Unmodified	_LPSNDSSKF_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.745361328125	2	497.745639	993.476725	0.0090605	4.5098E-06	-0.25469	-0.00012677	-0.24563	-0.00012226	497.7454094936467	32.171	0.65527	32.245	32	32.656	0.07378					78	33	3	0	0	0	0.11198	2	4805	4805;4852		29.841	12.728	1	121240			11722	1586	7722	7780	16062;16063	16062					-0.020274132074177942
LPSPAIDHEQL	11	Unmodified	_LPSPAIDHEQL_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.3197631835938	2	610.319502	1218.62445	0.16516	0.0001008	0.11425	6.9726E-05	0.2794	0.00017052	610.319502440535	50.977	0.74178	50.977	50.707	51.448	0					53	24	3	0	0	0	0.0058552	2	10589	10589;10633		87.123	41.424	1	424660			11723	2371	7723	7781	16064;16065	16064					0.02388478326565746
LPSPAIDHEQL	11	Unmodified	_LPSPAIDHEQL_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.3195190429688	2	610.319502	1218.62445	0.35765	0.00021828	-0.17542	-0.00010706	0.18223	0.00011122	610.3192750455694	50.903	0.54527	50.973	50.717	51.262	0.069878					47	20	3	0	0	0	0.012435	1	10449	10449		93.448	58.516	1	385960			11724	2371	7723	7781	16066	16066					0.02388478326565746
LPSPGEKAL	9	Unmodified	_LPSPGEKAL_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.263427734375	2	456.263468	910.512382	0.31513	0.00014378	-0.27898	-0.00012729	0.036144	1.6491E-05	456.2632813558792	38.868	1.0033	38.868	38.514	39.518	0					117	38	4	0	0	0	0.0047429	4	6941	6903;6941;6988;7037		83.429	14.472	1	923830			11725	2544	7724	7782	16067;16068;16069;16070	16068					0.053546690402299646
LPSPGEKAL	9	Unmodified	_LPSPGEKAL_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.26348876953125	2	456.263468	910.512382	0.20032	9.1401E-05	-0.039668	-1.8099E-05	0.16066	7.3302E-05	456.2633829005372	38.785	0.99165	38.872	38.461	39.453	0.08688					106	38	4	0	0	0	0.0077293	2	6781	6781;6825		74.2	12.842	1	753810			11726	2544	7724	7782	16071;16072	16071					0.053546690402299646
LPSPVQSLA	9	Unmodified	_LPSPVQSLA_					0	0	0			REV__nc|ENSG00000158555|Q8WTR4-5|GDPD5	REV__nc|ENSG00000158555|Q8WTR4-5|GDPD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.26348876953125	2	456.263468	910.512382	0.20032	9.1401E-05	-0.039668	-1.8099E-05	0.16066	7.3302E-05	456.2633829005372	38.785	0.99165	38.872	38.461	39.453	0.08688					106	38	4	0	0	0	0.14444	2	6742	6742;6877		24.991	0	1	753810	+		11727	9809	7725	7783	16073;16074	16073					0.05354669040218596
LPSQEVQAL	9	Unmodified	_LPSQEVQAL_					0	0	0		ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF;ENSG00000173992|ENST00000533244|CCS	ENST00000526058.1_1_11:66360677-66366729:+|nuORF	ENST00000526058.1_1_11:66360677-66366729:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7718200683594	2	492.771657	983.528761	0.37369	0.00018414	0.16218	7.9918E-05	0.53587	0.00026406	492.77166920894234	53.458	0.47047	53.458	53.188	53.659	0					42	19	3	0	0	0	0.13341	2	11338	11338;11379		26.268	0	1	315110			11728	4563	7726	7784	16075;16076	16075					0.036337502063247484
LPSQEVQAL	9	Unmodified	_LPSQEVQAL_					0	0	0		ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF;ENSG00000173992|ENST00000533244|CCS	ENST00000526058.1_1_11:66360677-66366729:+|nuORF	ENST00000526058.1_1_11:66360677-66366729:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.77166748046875	2	492.771657	983.528761	0.45135	0.00022241	-0.12438	-6.1292E-05	0.32696	0.00016112	492.77157098662644	53.41	0.4594	53.475	53.242	53.701	0.06543					46	22	3	0	0	0	0.18398	2	11195	11195;11237		20.415	0	1	260460			11729	4563	7726	7784	16077;16078	16077					0.036337502063247484
LPSQPHLL	8	Unmodified	_LPSQPHLL_					0	0	0			REV__HDAC9|p.P420L|1|0.11|ENSG00000048052|chr7:18648484-18648484|C/T|missense_variant	REV__HDAC9|p.P420L|1|0.11|ENSG00000048052|chr7:18648484-18648484|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2302551269531	2	452.766178	903.517802	0.18595	8.4192E-05	-0.24046	-0.00010887	-0.054515	-2.4683E-05	452.7660772782147	50.548	0.59531	50.622	50.291	50.886	0.07312					33	20	2	0	0	0	0.3576	1	10408	10408		6.2058	0	1	78070	+		11730	12664	7727	7785	16079	16079					0.06218392622713509
LPSQSEMMAE	10	Unmodified	_LPSQSEMMAE_					0	0	0		ENST00000527849.5_1_1:146647950-146672902:-|nuORF;nc|ENSG00000131781|P49326-3|FMO5;ENSG00000131781|ENST00000254090|FMO5	ENST00000527849.5_1_1:146647950-146672902:-|nuORF	ENST00000527849.5_1_1:146647950-146672902:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.743896484375	2	561.743924	1121.4733	0.064488	3.6226E-05	0.18513	0.000104	0.24962	0.00014022	561.7440198018511	33.138	0.58074	33.212	32.966	33.546	0.074326					40	22	2	0	0	0	0.46208	1	5140	5140		2.4985	0.65425	1	43729			11731	2547	7728	7786	16080	16080					-0.08258167367966962
LPSSATTHAI	10	Unmodified	_LPSSATTHAI_					0	0	0			REV__nc|ENSG00000263528|Q14164-2|IKBKE	REV__nc|ENSG00000263528|Q14164-2|IKBKE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.28961181640625	2	499.269281	996.52401	0.10372	5.1786E-05	0.61748	0.00030829	0.72121	0.00036008	499.269450219423	45.741	0.95647	45.827	45.525	46.481	0.085621					111	35	4	0	0	0	0.27354	1	8880	8880		25.399	1.3787	1	1854100	+		11732	11116	7729	7787	16081	16081					0.02560866063549838
LPSSFVEKL	9	Unmodified	_LPSSFVEKL_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;ENST00000566127.1_1_16:29556504-29560080:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.292236328125	2	510.292225	1018.5699	0.1744	8.8994E-05	0.087832	4.482E-05	0.26223	0.00013381	510.2921581224204	56.816	0.7569	56.816	56.539	57.296	0					74	27	4	0	0	0	0.00021732	4	12395	12352;12395;12450;12463		136.39	77.713	1	1300700			11733	3647;7018	7730	7788	16082;16083;16084;16085	16083					0.061355112458159056
LPSSFVEKL	9	Unmodified	_LPSSFVEKL_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;ENST00000566127.1_1_16:29556504-29560080:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2923889160156	2	510.292225	1018.5699	0.30015	0.00015316	0.062989	3.2143E-05	0.36314	0.00018531	510.2921347334412	56.757	0.77545	56.823	56.543	57.318	0.066452					69	27	5	0	0	0	0.002259	2	12201	12201;12251		114.19	59.413	1	900370			11734	3647;7018	7730	7788	16086;16087	16086					0.061355112458159056
LPSSKNLKP	9	Unmodified	_LPSSKNLKP_					0	0	0		ENST00000426241.5_1_10:46208352-46210670:-|nuORF	ENST00000426241.5_1_10:46208352-46210670:-|nuORF	ENST00000426241.5_1_10:46208352-46210670:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.72747802734375	2	492.297842	982.581131	-0.10777	-5.3056E-05	0.1932	9.5112E-05	0.085429	4.2056E-05	492.29791699202474	28.131	0.23055	28.131	28.041	28.271	0					16	9	2	0	0	0	0.25281	1	3736	3736		6.7232	1.4925	1	17947			11735	6470	7731	7789	16088	16088					0.08914333339942004
LPSSPSPRSA	10	Unmodified	_LPSSPSPRSA_					0	0	0			REV__CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	REV__CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2412414550781	2	499.766906	997.519259	0.20404	0.00010197	0.51515	0.00025745	0.71919	0.00035943	499.76685194873926	36.17	0.33369	36.17	35.999	36.332	0					21	12	2	0	0	0	0.31784	1	6165	6165		4.5289	0.93237	1	30530	+		11736	7745	7732	7790	16089	16089					0.020399819208023473
LPSSQREVL	9	Unmodified	_LPSSQREVL_					0	0	0		ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7905883789062	2	514.790381	1027.56621	0.33912	0.00017458	-0.35883	-0.00018472	-0.019707	-1.0145E-05	514.7902233497547	37.549	0.735	37.549	37.315	38.05	0					52	25	3	0	0	0	0.098463	2	6532	6532;6581		32.786	6.5175	1	236970			11737	6587	7733	7791	16090;16091	16090					0.05352841471949432
LPSSQREVL	9	Unmodified	_LPSSQREVL_					0	0	0		ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7904052734375	2	514.790381	1027.56621	0.33285	0.00017135	-0.15941	-8.2063E-05	0.17344	8.9284E-05	514.7902268190647	37.462	0.61204	37.547	37.321	37.933	0.084476					37	20	2	0	0	0	0.15482	2	6387	6387;6433		23.79	3.3752	1	192810			11738	6587	7733	7791	16092;16093	16092					0.05352841471949432
LPSSRQLVL	9	Unmodified	_LPSSRQLVL_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.81103515625	2	506.811116	1011.60768	0.11441	5.7984E-05	-0.34548	-0.00017509	-0.23107	-0.00011711	506.8109416924805	50.415	0.41642	50.415	50.264	50.68	0					21	14	2	0	0	0	0.30757	1	10463	10463		5.7319	0	1	54541			11739	291	7734	7792	16094	16094					0.10234022231270501
LPSSRQLVL	9	Unmodified	_LPSSRQLVL_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.74090576171875	2	506.811116	1011.60768	0.2398	0.00012154	-0.39684	-0.00020112	-0.15704	-7.9587E-05	506.81084971924207	50.346	0.263	50.42	50.263	50.526	0.07312					15	8	2	0	0	0	0.25458	1	10270	10270		5.7319	0	1	53734			11740	291	7734	7792	16095	16095					0.10234022231270501
LPSSRQLVL	9	Unmodified	_LPSSRQLVL_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	506.811116	1011.60768	0.11441	5.7984E-05	-0.34548	-0.00017509	-0.23107	-0.00011711	506.8109416924805	50.415	0.41642	50.415	50.264	50.68	0	-0.0022587	2.8123E-05	NaN	5.7319	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54541			11741	291	7734	7792							0.10234022231270501
LPTDFDEIF	9	Unmodified	_LPTDFDEIF_					0	0	0		nc|ENSG00000173406|O75553-3|DAB1;nc|ENSG00000173406|O75553-5|DAB1;nc|ENSG00000173406|O75553|DAB1	nc|ENSG00000173406|O75553-3|DAB1	nc|ENSG00000173406|O75553-3|DAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7472534179688	2	548.763497	1095.51244	0.53574	0.000294	-2.6921	-0.0014773	-2.1564	-0.0011833	548.7619251797433	77.943	0.49883	77.978	77.822	78.321	0.034485					22	16	2	0	0	0	0.21398	1	18718	18718		16.942	0.79319	1	177600			11742	7559	7735	7793	16096	16096					-0.031493757504449604
LPTDSATVL	9	Unmodified	_LPTDSATVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.7530517578125	2	458.752933	915.491313	0.37713	0.00017301	0.11451	5.2531E-05	0.49163	0.00022554	458.7529026188788	58.06	0.47716	58.06	57.74	58.217	0					56	16	4	0	0	0	0.0046499	2	12740	12740;12792		85.272	27.801	1	3563100			11743	5252	7736	7794	16097;16098	16097					0.030186589406980602
LPTDSATVL	9	Unmodified	_LPTDSATVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.7531433105469	2	458.752933	915.491313	0.15312	7.0246E-05	0.3153	0.00014464	0.46842	0.00021489	458.7529797463093	57.971	1.0223	58.039	57.724	58.746	0.068371					95	37	4	0	0	0	0.0097093	3	12579	12579;12622;12669		68.081	25.986	1	2833800			11744	5252	7736	7794	16099;16100;16101	16099					0.030186589406980602
LPTDTFQYAI	10	Unmodified	_LPTDTFQYAI_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.8009643554688	2	584.797872	1167.58119	-0.1879	-0.00010988	2.2243	0.0013008	2.0364	0.0011909	584.7998009163327	14.858	0.0992	14.858	14.796	14.895	0					21	12	2	0	0	0	0.46827	1	450	450		1.3295	0.13619	1	10974	+		11745	10809	7737	7795	16102	16102					0.004102885493011854
LPTEAEFQL	9	Unmodified	_LPTEAEFQL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.271728515625	2	524.27149	1046.52843	0.08828	4.6283E-05	0.46871	0.00024573	0.55699	0.00029202	524.2716744062744	71.94	0.91463	71.94	71.614	72.528	0					84	31	4	0	0	0	0.0021834	3	17005	16960;17005;17054		114.65	62.381	1	4408400			11746	4925	7738	7796	16103;16104;16105	16104					0.00702330486478786
LPTEAEFQL	9	Unmodified	_LPTEAEFQL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2717895507812	2	524.27149	1046.52843	0.053538	2.8068E-05	0.50831	0.00026649	0.56185	0.00029456	524.2716547324799	71.844	1.0707	71.9	71.623	72.694	0.055931					84	37	4	0	0	0	0.0044564	2	16835	16786;16835		92.653	48.795	1	3102800			11747	4925	7738	7796	16106;16107	16107					0.00702330486478786
LPTEEEWEF	9	Unmodified	_LPTEEEWEF_					0	0	0		ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2;nc|ENSG00000129103|Q8NBJ7-2|SUMF2	ENSG00000129103|ENST00000434526|SUMF2	ENSG00000129103|ENST00000434526|SUMF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2639770507812	2	590.263862	1178.51317	0.55022	0.00032478	-0.81248	-0.00047958	-0.26225	-0.0001548	590.2631686324171	75.117	0.7569	75.117	74.854	75.611	0					83	28	4	0	0	0	0.01943	2	17947	17947;18008		58.679	24.576	1	2286600			11748	2419	7739	7797	16108;16109	16108					-0.06894581101369113
LPTEEEWEF	9	Unmodified	_LPTEEEWEF_					0	0	0		ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2;nc|ENSG00000129103|Q8NBJ7-2|SUMF2	ENSG00000129103|ENST00000434526|SUMF2	ENSG00000129103|ENST00000434526|SUMF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2635498046875	2	590.263862	1178.51317	0.52344	0.00030897	-0.92826	-0.00054792	-0.40482	-0.00023895	590.2631139897807	75.085	0.72795	75.129	74.841	75.569	0.044044					71	26	4	0	0	0	0.0097093	2	17825	17784;17825		68.081	33.978	1	2351000			11749	2419	7739	7797	16110;16111	16111					-0.06894581101369113
LPTEKEVAL	9	Unmodified	_LPTEKEVAL_					0	0	0		nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-5|MAP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2893371582031	2	500.289682	998.564812	-0.066235	-3.3137E-05	-0.49778	-0.00024903	-0.56402	-0.00028217	500.28941301736194	45.841	1.3212	45.841	45.151	46.472	0					120	45	5	0	0	0	0.013465	1	9088	9088		67.838	9.1593	1	3673100			11750	563	7740	7798	16112	16112					0.06547207383187015
LPTEKEVAL	9	Unmodified	_LPTEKEVAL_					0	0	0		nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-5|MAP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.28961181640625	2	500.289682	998.564812	0.083389	4.1719E-05	-0.25939	-0.00012977	-0.176	-8.8053E-05	500.2895083494753	45.75	0.95564	45.836	45.503	46.459	0.085617					114	35	5	0	0	0	0.0084898	1	8880	8880		76.825	8.7441	1	3123700			11751	563	7740	7798	16113	16113					0.06547207383187015
LPTENELTF	9	Unmodified	_LPTENELTF_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2686157226562	2	532.268947	1062.52334	0.44606	0.00023743	-0.34185	-0.00018196	0.10421	5.5468E-05	532.2687241927422	68.357	0.72987	68.357	68.158	68.888	0					49	26	3	0	0	0	0.0569	1	15890	15890		41.84	7.4379	1	343090			11752	650	7741	7799	16114	16114					-0.005419733761527823
LPTENELTF	9	Unmodified	_LPTENELTF_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8131713867188	2	532.268947	1062.52334	0.5494	0.00029243	-0.50585	-0.00026925	0.043542	2.3176E-05	532.2685721522071	68.273	0.84315	68.337	68.103	68.946	0.063507					48	31	2	0	0	0	0.12752	1	15762	15762		39.95	5.548	1	307610			11753	650	7741	7799	16115	16115					-0.005419733761527823
LPTENGGVIS	10	Unmodified	_LPTENGGVIS_					0	0	0			REV__ENSG00000139517|ENST00000316334|LNX2	REV__ENSG00000139517|ENST00000316334|LNX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7615051269531	2	493.761289	985.508025	0.66902	0.00033034	-0.4688	-0.00023148	0.20022	9.886E-05	493.7611128993312	54.932	0.86229	54.932	54.635	55.497	0					96	31	5	0	0	0	0.063851	1	11781	11781		53.833	8.1332	1	3799700	+		11754	9344	7742	7800	16116	16116					0.014691598266836081
LPTENVDKM	9	Oxidation (M)	_LPTENVDKM(Oxidation (M))_		LPTENVDKM(1)		LPTENVDKM(53)	0	0	1		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7603759765625	2	531.760432	1061.50631	-0.098107	-5.2169E-05	0.25732	0.00013683	0.15922	8.4666E-05	531.7603706671052	30.057	0.75026	30.057	29.799	30.55	0					70	36	3	0	0	0	0.026931	1	4317	4317		53.317	23.476	1	184840			11755	5365	7743	7801	16117	16117		304			-0.02198217253612711
LPTENVDKM	9	Oxidation (M)	_LPTENVDKM(Oxidation (M))_		LPTENVDKM(1)		LPTENVDKM(46)	0	0	1		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.760498046875	2	531.760432	1061.50631	0.023313	1.2397E-05	0.21695	0.00011536	0.24026	0.00012776	531.7603742238733	29.993	0.56228	30.068	29.863	30.426	0.075403					86	34	4	0	0	0	0.037699	1	4177	4177		46.022	20.623	1	156690			11756	5365	7743	7801	16118	16118		304			-0.02198217253612711
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7626953125	2	523.762975	1045.5114	0.090776	4.7545E-05	0.39729	0.00020809	0.48807	0.00025563	523.7632378228312	39.231	0.49267	39.231	39.004	39.496	0					34	18	3	0	0	0	0.18254	1	7047	7047		20.581	6.6749	1	89041			11757	5365	7743	7802	16119	16119					-0.009539133909811426
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7628173828125	2	523.762975	1045.5114	0.11394	5.9679E-05	0.19787	0.00010364	0.31181	0.00016332	523.7627735901813	39.136	0.37358	39.223	39.017	39.391	0.08688					32	14	3	0	0	0	0.20966	1	6902	6902		17.443	8.0595	1	87608			11758	5365	7743	7802	16120	16120					-0.009539133909811426
LPTEQEVRF	9	Unmodified	_LPTEQEVRF_					0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7957763671875	2	559.795663	1117.57677	0.27481	0.00015384	-0.16475	-9.2228E-05	0.11006	6.161E-05	559.7956030667292	49.996	0.61488	49.996	49.733	50.348	0					53	21	4	0	0	0	0.0028522	3	10302	10302;10326;10373		110.55	62.804	1	493180			11759	1190	7744	7803	16121;16122;16123	16121					0.022688241263722375
LPTEQEVRF	9	Unmodified	_LPTEQEVRF_					0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7960205078125	2	559.795663	1117.57677	0.38402	0.00021497	-0.42829	-0.00023976	-0.044275	-2.4785E-05	559.7955136807052	49.94	0.62352	50.013	49.791	50.414	0.07312					49	21	4	0	0	0	0.0045224	3	10146	10139;10146;10185		90.135	48.295	1	397320			11760	1190	7744	7803	16124;16125;16126	16125					0.022688241263722375
LPTERELLR	9	Unmodified	_LPTERELLR_					0	0	0		ENST00000416191.2_1_10:101190955-101193337:+|nuORF	ENST00000416191.2_1_10:101190955-101193337:+|nuORF	ENST00000416191.2_1_10:101190955-101193337:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.8317260742188	2	563.83258	1125.65061	-0.20974	-0.00011826	-0.47122	-0.00026569	-0.68096	-0.00038395	564.3337724766503	43.133	0.3846	43.133	42.974	43.358	0					19	12	2	0	0	0	0.25746	1	8238	8238		3.2813	0.97858	1	47631			11761	6423	7745	7804	16127	16127					0.09280792288700468
LPTERELLR	9	Unmodified	_LPTERELLR_					0	0	0		ENST00000416191.2_1_10:101190955-101193337:+|nuORF	ENST00000416191.2_1_10:101190955-101193337:+|nuORF	ENST00000416191.2_1_10:101190955-101193337:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8316650390625	2	563.83258	1125.65061	-0.074299	-4.1892E-05	-0.31324	-0.00017661	-0.38754	-0.00021851	563.8321566344636	43.028	0.28823	43.118	42.98	43.268	0.089767					18	10	2	0	0	0	0.30757	1	8094	8094		5.7319	0	1	46854			11762	6423	7745	7804	16128	16128					0.09280792288700468
LPTFTQILL	9	Unmodified	_LPTFTQILL_					0	0	0			REV__ENST00000366691.3_1_1:228880485-228880638:+|nuORF	REV__ENST00000366691.3_1_1:228880485-228880638:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.31689453125	2	523.318243	1044.62193	0.47502	0.00024859	-1.9671	-0.0010294	-1.4921	-0.00078085	523.3167116822889	97.846	0.368	97.887	97.755	98.123	0.040855					30	19	3	0	0	0	0.18398	1	24728	24728		20.415	2.2682	1	182860	+		11763	11551	7746	7805	16129	16129					0.10140674659578508
LPTHIWHF	8	Unmodified	_LPTHIWHF_					0	0	0			REV__nc|ENSG00000166448|Q8N3G9|TMEM130	REV__nc|ENSG00000166448|Q8N3G9|TMEM130	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.78076171875	2	525.779619	1049.54469	0.33485	0.00017606	1.5202	0.0007993	1.8551	0.00097536	525.7802625904619	81.583	1.0935	81.605	81.283	82.377	0.021866					81	39	4	0	0	0	0.53423	1	19840	19840		5.2307	0.90143	1	574580	+		11764	10078	7747	7806	16130	16130					0.0218950123387458
LPTHLQSAL	9	Unmodified	_LPTHLQSAL_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2821350097656	2	490.282192	978.549831	0.38106	0.00018683	-0.011193	-5.4875E-06	0.36987	0.00018134	490.2822785573783	47.433	0.41193	47.433	47.2	47.612	0					20	13	2	0	0	0	0.30757	1	9540	9540		5.7319	1.4026	1	61936			11765	5385	7748	7807	16131	16131					0.059697603058339155
LPTIMFNLL	9	Unmodified	_LPTIMFNLL_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3060302734375	2	531.306821	1060.59909	0.26085	0.00013859	-0.14332	-7.6148E-05	0.11753	6.2445E-05	531.306588582722	103	0.41988	103	102.77	103.19	0					48	25	3	0	0	0	0.24021	1	26471	26471		13.906	0	1	105640	+		11766	9808	7749	7808	16132	16132					0.07121332270435232
LPTIMFNLL	9	Unmodified	_LPTIMFNLL_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8243408203125	2	531.306821	1060.59909	0.50043	0.00026588	-0.38459	-0.00020433	0.11584	6.1548E-05	531.3064797539324	102.91	0.38023	102.95	102.78	103.16	0.040916					61	30	3	0	0	0	0.19398	3	26238	26230;26238;26310		19.257	0	1	115700	+		11767	9808	7749	7808	16133;16134;16135	16134					0.07121332270435232
LPTKEASSL	9	Unmodified	_LPTKEASSL_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.26605224609375	2	473.266207	944.517862	-0.2573	-0.00012177	0.14665	6.9405E-05	-0.11064	-5.2364E-05	473.2662107658272	33.973	0.56622	33.973	33.771	34.337	0					60	21	4	0	0	0	0.064247	1	5498	5498		40.239	3.733	1	324910			11768	453	7750	7809	16136	16136					0.04338347832049294
LPTLNVFLV	9	Unmodified	_LPTLNVFLV_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.3128967285156	2	508.312961	1014.61137	0.33877	0.0001722	-0.22749	-0.00011563	0.11128	5.6567E-05	508.3126079523473	62.477	0.60625	62.477	62.255	62.861	0					30	21	2	0	0	0	0.083124	1	14131	14131		36.127	4.8587	1	131610			11769	2799	7751	7810	16137	16137					0.10464692005143661
LPTLYRQPG	9	Unmodified	_LPTLYRQPG_					0	0	0		ENST00000251334.6_2_17:60005114-60005240:-|nuORF	ENST00000251334.6_2_17:60005114-60005240:-|nuORF	ENST00000251334.6_2_17:60005114-60005240:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2754516601562	2	522.795466	1043.57638	0.3061	0.00016003	-0.33978	-0.00017764	-0.033682	-1.7609E-05	523.2970076258877	37.986	0.37173	37.986	37.729	38.101	0					18	12	2	0	0	0	0.25504	1	6655	6655		4.756	0	1	15564			11770	5834	7752	7811	16138	16138					0.056334491971938405
LPTRTTPDP	9	Unmodified	_LPTRTTPDP_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2893371582031	2	499.269281	996.52401	-0.035879	-1.7913E-05	0.64373	0.0003214	0.60786	0.00030348	499.26946425075903	45.858	0.91941	45.858	45.53	46.449	0					105	31	4	0	0	0	0.0569	1	9044	9044		41.84	5.7126	1	2204300			11771	468	7753	7812	16139	16139					0.02560866063549838
LPTSEESRL	9	Unmodified	_LPTSEESRL_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2723999023438	2	516.272021	1030.52949	0.21806	0.00011258	-0.46735	-0.00024128	-0.24929	-0.0001287	516.7727643956135	36.029	0.63968	36.111	35.794	36.434	0.081715					47	24	3	0	0	0	0.29718	1	5998	5998		7.1017	2.3457	1	54151			11772	4805	7754	7813	16140	16140					0.01544544855391905
LPTSLERAL	9	Unmodified	_LPTSLERAL_					0	0	0		ENSG00000187474|ENST00000339223|FPR3;ENSG00000171049|ENST00000340023|FPR2	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.29559326171875	2	500.295299	998.576045	0.23226	0.0001162	0.20358	0.00010185	0.43584	0.00021805	500.29529860481654	53.158	0.44054	53.158	52.921	53.361	0					30	17	2	0	0	0	0.056368	1	11268	11268		41.956	7.5538	1	110500			11773	5119	7755	7814	16141	16141					0.07670029477310436
LPTSLERAL	9	Unmodified	_LPTSLERAL_					0	0	0		ENSG00000187474|ENST00000339223|FPR3;ENSG00000171049|ENST00000340023|FPR2	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.29534912109375	2	500.295299	998.576045	0.39746	0.00019885	0.018542	9.2763E-06	0.416	0.00020812	500.2952487972765	53.125	0.39656	53.19	52.932	53.328	0.06543					28	18	2	0	0	0	0.23347	1	11116	11116		18.373	6.1324	1	92345			11774	5119	7755	7814	16142	16142					0.07670029477310436
LPTSNNRH	8	Unmodified	_LPTSNNRH_					0	0	0		ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.74383544921875	2	469.743765	937.472977	0.13447	6.3166E-05	0.47906	0.00022504	0.61353	0.0002882	469.74390315003615	58.024	0.44926	58.024	57.768	58.217	0					40	15	3	0	0	0	0.39599	2	12773	12773;12817		26.884	2.6737	1	850790			11775	5669	7756	7815	16143;16144	16143					0.001739618093779427
LPTSNNRH	8	Unmodified	_LPTSNNRH_					0	0	0		ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.7439270019531	2	469.743765	937.472977	0.021148	9.9339E-06	0.64995	0.00030531	0.6711	0.00031525	469.74392599244936	57.957	0.63966	58.025	57.724	58.364	0.068371					61	24	4	0	0	0	0.39599	3	12614	12568;12614;12663		26.884	2.6737	1	700180			11776	5669	7756	7815	16145;16146;16147	16146					0.001739618093779427
LPTSSGALLS	10	Unmodified	_LPTSSGALLS_					0	0	0			REV__ENSG00000275023|ENST00000621332|MLLT6	REV__ENSG00000275023|ENST00000621332|MLLT6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2662658691406	2	473.266207	944.517862	-0.2531	-0.00011978	0.27697	0.00013108	0.023863	1.1293E-05	473.2662801590141	33.928	0.52801	34.004	33.808	34.336	0.076244					55	21	3	0	0	0	0.22666	2	5319	5319;5360		30.637	1.555	1	240750	+		11777	11134	7757	7816	16148;16149	16148					0.04338347832049294
LPTTRFHQ	8	Unmodified	_LPTTRFHQ_					0	0	0			REV__ENST00000586392.1_1_19:34884680-34890938:+|nuORF	REV__ENST00000586392.1_1_19:34884680-34890938:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.27166748046875	2	500.272158	998.529764	0.16158	8.0833E-05	-1.3329	-0.0006668	-1.1713	-0.00058597	500.2715682827146	35.791	0.40921	35.791	35.589	35.999	0					27	15	3	0	0	0	0.3576	1	6028	6028		7.2892	1.0834	1	43707	+	+	11778	7850	7758	7817	16150	16150					0.03044009365896727
LPTVIIVNL	9	Unmodified	_LPTVIIVNL_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7139892578125	2	491.320786	980.627018	0.28951	0.00014224	0.024266	1.1922E-05	0.31377	0.00015416	491.320814039807	88.058	0.23141	88.088	87.935	88.167	0.030037					11	7	2	0	0	0	0.25699	1	21708	21708		3.5965	0	1	74000			11779	4375	7759	7818	16151	16151					0.13592978522194699
LPVALQTRL	9	Unmodified	_LPVALQTRL_					0	0	0		nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;nc|ENSG00000102103|O60828-3|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1	nc|ENSG00000102103|O60828-10|PQBP1	nc|ENSG00000102103|O60828-10|PQBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.8214416503906	2	505.821484	1009.62842	0.13766	6.9629E-05	0.23888	0.00012083	0.37654	0.00019046	505.82149972052514	56.469	0.70594	56.469	56.242	56.948	0					48	25	3	0	0	0	0.0085356	2	12267	12267;12316		71.708	20.078	1	688480			11780	1296	7760	7819	16152;16153	16152					0.1239861261092301
LPVALQTRL	9	Unmodified	_LPVALQTRL_					0	0	0		nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;nc|ENSG00000102103|O60828-3|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1	nc|ENSG00000102103|O60828-10|PQBP1	nc|ENSG00000102103|O60828-10|PQBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.82135009765625	2	505.821484	1009.62842	0.14155	7.1601E-05	0.19172	9.6978E-05	0.33328	0.00016858	505.8214555048718	56.387	0.45198	56.453	56.254	56.706	0.066448					42	16	4	0	0	0	0.047066	2	12107	12107;12150		43.982	11.196	1	500550			11781	1296	7760	7819	16154;16155	16154					0.1239861261092301
LPVASDSSPMG	11	Unmodified	_LPVASDSSPMG_					0	0	0		nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	nc|ENSG00000258436|Q7Z5J4-3|RAI1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.752197265625	2	530.752607	1059.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.178	1	81.201	80.701	81.701	0.023605								0	0	0	0.23525	1	19659	19659		22.736	0	1				11782	1595	7761	7820	16156	16156					-0.03670503770649702
LPVATDFEF	9	Unmodified	_LPVATDFEF_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.7611694335938	2	519.760758	1037.50696	0.83303	0.00043297	0.65975	0.00034291	1.4928	0.00077589	519.7605684458811	81.163	1.524	81.163	80.286	81.81	0					94	52	4	0	0	0	0.0064512	1	19811	19811		78.149	55.001	1	808910			11783	1765	7762	7821	16157	16157					-0.010290545422321884
LPVATDFEF	9	Unmodified	_LPVATDFEF_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.7611694335938	2	519.760758	1037.50696	0.52568	0.00027323	0.80629	0.00041908	1.332	0.0006923	519.7607592173866	81.158	2.0244	81.182	80.248	82.272	0.023605					90	72	2	0	0	0	0.0042542	1	19645	19645		100.37	71.885	1	1360700			11784	1765	7762	7821	16158	16158					-0.010290545422321884
LPVAWTCIFP	10	Unmodified	_LPVAWTCIFP_					0	0	0		ENST00000489504.5_1_19:54824291-54824357:-|nuORF	ENST00000489504.5_1_19:54824291-54824357:-|nuORF	ENST00000489504.5_1_19:54824291-54824357:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7652587890625	2	573.804445	1145.59434	0.37478	0.00021505	-2.9362	-0.0016848	-2.5614	-0.0014697	573.8027415858539	55.641	0.57832	55.706	55.432	56.01	0.065128					25	20	2	0	0	0	0.31794	1	11815	11815		3.5965	0.31518	1	57963			11785	6799	7763	7822	16159	16159					0.027364481276663355
LPVAWTCIFP	10	Unmodified	_LPVAWTCIFP_					0	0	0		ENST00000489504.5_1_19:54824291-54824357:-|nuORF	ENST00000489504.5_1_19:54824291-54824357:-|nuORF	ENST00000489504.5_1_19:54824291-54824357:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	573.804445	1145.59434	0.45044	0.00025847	-3.5397	-0.0020311	-3.0893	-0.0017726	573.8023276674414	55.621	0.50845	55.621	55.38	55.889	0	-0.042771	-0.00042919	NaN	3.5965	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85210			11786	6799	7763	7822							0.027364481276663355
LPVDDNFSL	9	Unmodified	_LPVDDNFSL_					0	0	0		nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000558761.5_1_15:50545740-50557820:-|nuORF	nc|ENSG00000140287|P19113-2|HDC	nc|ENSG00000140287|P19113-2|HDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2560119628906	2	510.25584	1018.49713	0.028628	1.4607E-05	0.41595	0.00021224	0.44457	0.00022685	510.2559339958102	73.324	0.48799	73.324	73.027	73.515	0					33	17	2	0	0	0	0.11816	1	17425	17425		28.495	4.4739	1	1138100			11787	3002	7764	7823	16160	16160					-0.0113824254760857
LPVDFERSF	9	Unmodified	_LPVDFERSF_					0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8134155273438	2	555.284931	1108.55531	0.61164	0.00033963	1.2305	0.0006833	1.8422	0.0010229	555.2859908361444	63.057	0.074036	63.057	62.999	63.073	0					5	3	2	0	0	0	0.24277	1	14274	14274		14.405	2.1647	1	170810			11788	23	7765	7824	16161	16161					0.0053743909768400044
LPVDINDIF	9	Unmodified	_LPVDINDIF_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.28173828125	2	523.281857	1044.54916	0.042763	2.2377E-05	1.2417	0.00064978	1.2845	0.00067215	523.2821664527515	89.819	0.4048	89.853	89.631	90.035	0.034065					30	15	3	0	0	0	0.24366	1	22275	22275		13.042	1.4022	1	226630			11789	4000	7766	7825	16162	16162					0.02866920866131295
LPVDKAQEL	9	Unmodified	_LPVDKAQEL_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.787109375	2	506.787307	1011.56006	-0.36847	-0.00018673	-0.48439	-0.00024548	-0.85286	-0.00043222	506.787000365985	41.239	0.46817	41.329	41.128	41.596	0.089695					35	17	4	0	0	0	0.1646	2	7521	7521;7569		22.658	3.2961	1	123290			11790	5226	7767	7826	16163;16164	16163					0.05474323240423473
LPVEDDIDL	9	Unmodified	_LPVEDDIDL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7611694335938	2	514.760955	1027.50736	0.54529	0.00028069	-0.58724	-0.00030229	-0.041958	-2.1599E-05	514.7607063966541	70.746	0.75816	70.746	70.351	71.109	0					35	26	2	0	0	0	0.23216	1	16621	16621		14.838	0	1	235970			11791	3187	7768	7827	16165	16165					-0.005296796130551229
LPVEDDIDL	9	Unmodified	_LPVEDDIDL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7609252929688	2	514.760955	1027.50736	0.63456	0.00032665	-0.43059	-0.00022165	0.20397	0.000105	514.7606534427529	70.658	0.4053	70.719	70.507	70.912	0.060562					27	16	2	0	0	0	0.26684	1	16443	16443		10.824	0	1	350200			11792	3187	7768	7827	16166	16166					-0.005296796130551229
LPVEDDIDL	9	Unmodified	_LPVEDDIDL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	514.760955	1027.50736	0.63456	0.00032665	-0.43059	-0.00022165	0.20397	0.000105	514.7606534427529	70.658	0.4053	70.719	70.507	70.912	0.060562	-0.013517	5.5423E-05	NaN	14.838	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350200			11793	3187	7768	7827							-0.005296796130551229
LPVEEEAVTL	10	Unmodified	_LPVEEEAVTL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.298828125	2	550.297704	1098.58086	0.68812	0.00037867	1.7117	0.00094194	2.3998	0.0013206	550.2987386813245	67.107	0.79795	67.107	66.871	67.669	0					66	29	4	0	0	0	0.14584	1	15524	15524		39.95	14.55	1	639670			11794	3384	7769	7828	16167	16167					0.03550868829438514
LPVEEEAVTL	10	Unmodified	_LPVEEEAVTL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2973022460938	2	550.297704	1098.58086	0.83443	0.00045919	1.2464	0.00068587	2.0808	0.0011451	550.2985570577961	67.067	0.91258	67.132	66.871	67.784	0.065063					60	31	3	0	0	0	0.19399	2	15361	15361;15370		34.402	0.74515	1	652270			11795	3384	7769	7828	16168;16169	16168					0.03550868829438514
LPVEEFNEL	9	Unmodified	_LPVEEFNEL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2767944335938	2	545.276772	1088.53899	-0.014701	-8.0162E-06	0.62214	0.00033924	0.60744	0.00033122	545.2770020977445	72.275	0.56311	72.275	72.042	72.605	0					49	18	4	0	0	0	0.0043591	2	17085	17085;17147		96.367	60.24	1	528350			11796	923	7770	7829	16170;16171	16170					-0.0017368685910241766
LPVEEFNEL	9	Unmodified	_LPVEEFNEL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7420654296875	2	545.276772	1088.53899	0.15905	8.6725E-05	0.68783	0.00037506	0.84688	0.00046178	545.2768436516105	72.203	0.59635	72.259	72.03	72.627	0.055939					48	20	3	0	0	0	0.25376	1	17011	17011		6.2058	2.9245	1	509690			11797	923	7770	7829	16172	16172					-0.0017368685910241766
LPVEEFNELL	10	Unmodified	_LPVEEFNELL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3037719726562	2	601.818804	1201.62306	0.431	0.00025938	-1.1554	-0.00069533	-0.72438	-0.00043595	601.8181142984473	85.983	0.57619	85.983	85.779	86.356	0					60	22	4	0	0	0	0.2431	1	21294	21294		46.022	21.348	1	1166100			11798	923	7771	7830	16173	16173					0.030308442378100153
LPVEEFNELL	10	Unmodified	_LPVEEFNELL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3038330078125	2	601.818804	1201.62306	0.59367	0.00035728	-1.3849	-0.00083347	-0.79125	-0.00047619	601.8178831199804	85.953	0.67435	85.978	85.773	86.447	0.025169					64	24	5	0	0	0	0.29427	1	21131	21131		26.021	17.427	1	1101500			11799	923	7771	7830	16174	16174					0.030308442378100153
LPVEHVNQL	9	Unmodified	_LPVEHVNQL_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7922973632812	2	524.792924	1047.57129	-0.23071	-0.00012108	0.0029161	1.5303E-06	-0.22779	-0.00011954	524.7928128852546	45.039	0.4398	45.039	44.831	45.271	0					36	15	3	0	0	0	0.0081278	1	8801	8801		72.968	40.662	1	285870			11800	519	7772	7831	16175	16175					0.049411453345555856
LPVEHVNQL	9	Unmodified	_LPVEHVNQL_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7926025390625	2	524.792924	1047.57129	-0.076267	-4.0024E-05	-0.12463	-6.5406E-05	-0.2009	-0.00010543	524.7927930259525	44.95	0.43187	45.038	44.853	45.285	0.08754					35	15	3	0	0	0	0.048027	2	8644	8644;8689		43.772	16.144	1	219530			11801	519	7772	7831	16176;16177	16176					0.049411453345555856
LPVGHYCFVF	10	Unmodified	_LPVGHYCFVF_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18477017-18479494:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.7622680664062	2	591.294245	1180.57394	-0.055969	-3.3094E-05	3.0221	0.0017869	2.9661	0.0017538	591.2956956258959	58.703	0.36726	58.703	58.506	58.873	0					18	12	2	0	0	0	0.31667	1	12911	12911		7.9102	2.6795	1	167690			11802	7443	7773	7832	16178	16178					-0.009127225321435617
LPVGSPPESII	11	Unmodified	_LPVGSPPESII_					0	0	0		nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-3|UTRN	nc|ENSG00000152818|P46939-3|UTRN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.31787109375	2	554.816064	1107.61758	0.098453	5.4623E-05	1.1641	0.00064587	1.2626	0.00070049	554.8166735628971	107.41	0.42253	107.41	107.16	107.58	0					73	39	3	0	0	0	0.39744	1	27708	27708		4.897	0	1	169990			11803	3507	7774	7833	16179	16179					0.06807165446002728
LPVGSPPESII	11	Unmodified	_LPVGSPPESII_					0	0	0		nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-3|UTRN	nc|ENSG00000152818|P46939-3|UTRN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8173828125	2	554.816064	1107.61758	0.50861	0.00028218	0.95362	0.00052908	1.4622	0.00081127	555.3180830724311	107.29	0.35454	107.31	107.14	107.49	0.025711					45	34	2	0	0	0	0.39744	1	27496	27496		4.897	0	1	475040			11804	3507	7774	7833	16180	16180					0.06807165446002728
LPVGSPPESII	11	Unmodified	_LPVGSPPESII_					0	0	0		nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-3|UTRN	nc|ENSG00000152818|P46939-3|UTRN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	554.816064	1107.61758	0.50861	0.00028218	0.95362	0.00052908	1.4622	0.00081127	555.3180830724311	107.29	0.35454	107.31	107.14	107.49	0.025711	-0.046245	-0.00012654	NaN	4.897	45	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475040			11805	3507	7774	7833							0.06807165446002728
LPVHVFEAL	9	Unmodified	_LPVHVFEAL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7951049804688	2	512.794935	1023.57532	0.77351	0.00039665	-0.44931	-0.0002304	0.32421	0.00016625	512.7946323360214	66.188	0.66603	66.188	65.988	66.654	0					62	24	4	0	0	0	0.0053304	3	15232	15232;15282;15338		81.613	51.388	1	605190			11806	1226	7775	7834	16181;16182;16183	16181					0.06447234828260662
LPVHVFEAL	9	Unmodified	_LPVHVFEAL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7955322265625	2	512.794935	1023.57532	0.60625	0.00031088	-0.35322	-0.00018113	0.25302	0.00012975	512.7946770226994	66.172	0.66265	66.239	66.025	66.688	0.066872					61	25	3	0	0	0	0.21398	1	15177	15177		16.942	4.4107	1	572640			11807	1226	7775	7834	16184	16184					0.06447234828260662
LPVKVVVDVL	10	Unmodified	_LPVKVVVDVL_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.854736328125	2	540.854993	1079.69543	0.55265	0.0002989	-0.09527	-5.1527E-05	0.45738	0.00024737	540.8547768169666	69.483	0.43517	69.483	69.296	69.732	0					22	14	2	0	0	0	0.27736	1	16247	16247		24.991	14.191	1	279290			11808	657	7776	7835	16185	16185					0.15877223102052085
LPVKVVVDVL	10	Unmodified	_LPVKVVVDVL_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2698974609375	2	540.854993	1079.69543	0.38066	0.00020588	0.47988	0.00025955	0.86054	0.00046543	540.855116227841	69.404	0.38918	69.466	69.335	69.724	0.062126					28	13	3	0	0	0	0.39662	2	16052	16052;16110		12.241	6.5088	1	196120			11809	657	7776	7835	16186;16187	16186					0.15877223102052085
LPVLESFKVSF	11	Unmodified	_LPVLESFKVSF_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3607177734375	2	633.360639	1264.70673	0.33237	0.00021051	0.3696	0.00023409	0.70198	0.00044461	633.360704523987	79.398	0.69002	79.398	79.1	79.79	0					45	23	3	0	0	0	0.051837	2	19253	19253;19310		57.204	40.638	1	274450			11810	2027	7777	7836	16188;16189	16188					0.0849600040551195
LPVLESFKVSF	11	Unmodified	_LPVLESFKVSF_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.3604736328125	2	633.360639	1264.70673	0.20569	0.00013028	0.17954	0.00011371	0.38524	0.00024399	633.3607939783336	79.354	0.51904	79.381	79.162	79.681	0.026428					46	18	3	0	0	0	0.051837	2	19101	19101;19149		57.204	35.614	1	284120			11811	2027	7777	7836	16190;16191	16190					0.0849600040551195
LPVLHGWSR	9	Unmodified	_LPVLHGWSR_					0	0	0			REV__ENSG00000130997|ENST00000511885|POLN	REV__ENSG00000130997|ENST00000511885|POLN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.3186645507812	2	532.803626	1063.5927	0.35942	0.0001915	-0.8072	-0.00043008	-0.44777	-0.00023858	532.8032560214313	77.089	0.10468	77.089	77.008	77.112	0					6	3	2	0	0	0	0.24749	1	18554	18554		9.3474	0	1	102700	+		11812	9074	7778	7837	16192	16192					0.06344575153934784
LPVLVVLRVVV	11	Unmodified	_LPVLVVLRVVV_					0	0	0			REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF	REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.4207763671875	2	603.420834	1204.82712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.6	1	112.6	112.1	113.1	0								0	0	0	0.34113	1	28850	28850		0.35063	0.35063	1		+		11813	12587	7779	7838	16193	16193					0.23289453189772757
LPVLVVLRVVV	11	Unmodified	_LPVLVVLRVVV_					0	0	0			REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF	REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.9205932617188	2	603.420834	1204.82712	0.50756	0.00030627	-2.7778	-0.0016762	-2.2702	-0.0013699	603.92065729411	112.31	0.11111	112.32	112.28	112.39	0.014595					17	12	2	0	0	0	0.41738	1	28646	28646		0.35063	0.043601	1	545600	+		11814	12587	7779	7838	16194	16194					0.23289453189772757
LPVLVVLRVVV	11	Unmodified	_LPVLVVLRVVV_					0	0	0			REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF	REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.4181518554688	2	603.420834	1204.82712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.58	1	112.59	112.09	113.09	0.014595								0	0	0	0.34113	1	28726	28726		0.35063	0.043601	1		+		11815	12587	7779	7838	16195	16195					0.23289453189772757
LPVMKQPMV	9	Unmodified	_LPVMKQPMV_					0	0	0			REV__ENSG00000282815|ENST00000695840|TEX13C	REV__ENSG00000282815|ENST00000695840|TEX13C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2428588867188	2	521.793023	1041.57149	-0.55445	-0.00028931	-1.7901	-0.00093405	-2.3445	-0.0012234	521.792164870543	42.003	0.39047	42.003	41.829	42.22	0					20	13	2	0	0	0	0.25504	1	7862	7862		4.756	2.1785	1	26880	+		11816	11152	7780	7839	16196	16196					0.05237105738547143
LPVNDEHVTV	10	Unmodified	_LPVNDEHVTV_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7926025390625	2	561.793121	1121.57169	-0.15039	-8.449E-05	-0.55509	-0.00031185	-0.70549	-0.00039634	561.7926939906068	44.694	0.83189	44.694	44.243	45.075	0					69	29	4	0	0	0	4.1517E-05	2	8731	8688;8731		117.84	85.052	1	554670			11817	3246	7781	7840	16197;16198	16198					0.0157652026375672
LPVNDEHVTV	10	Unmodified	_LPVNDEHVTV_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7926025390625	2	561.793121	1121.57169	0.10226	5.7449E-05	-0.76724	-0.00043103	-0.66498	-0.00037358	561.7927500944083	44.623	0.55042	44.71	44.51	45.061	0.08754					64	20	5	0	0	0	5.4184E-05	2	8550	8550;8592		107.56	75.258	1	462300			11818	3246	7781	7840	16199;16200	16199					0.0157652026375672
LPVPARPIF	9	Unmodified	_LPVPARPIF_					0	0	0			REV__KIF18B|p.T766I|1|0.37|ENSG00000186185|chr17:44927058-44927058|G/A|missense_variant	REV__KIF18B|p.T766I|1|0.37|ENSG00000186185|chr17:44927058-44927058|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.3111267089844	2	505.313295	1008.61204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.644	1	99.687	99.187	100.19	0.042839								0	0	0	0.22377	1	25281	25281		14.582	3.4672	1		+		11819	10698	7782	7841	16201	16201					0.10807531444856977
LPVQPEEGDG	10	Unmodified	_LPVQPEEGDG_					0	0	0		ENST00000604105.1_1_15:21135288-21138168:-|nuORF	ENST00000604105.1_1_15:21135288-21138168:-|nuORF	ENST00000604105.1_1_15:21135288-21138168:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2755126953125	2	520.748379	1039.4822	0.24798	0.00012914	1.0667	0.0005555	1.3147	0.00068463	520.7483364739035	37.405	0.77438	37.489	37.185	37.96	0.084476					75	26	5	0	0	0	0.45443	1	6453	6453		3.9444	1.0552	1	221980			11820	7303	7783	7842	16202	16202					-0.03595734415625884
LPVQPENAL	9	Unmodified	_LPVQPENAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.774169921875	2	490.7742	979.533846	0.40391	0.00019823	0.16687	8.1898E-05	0.57078	0.00028013	490.7741963973633	57.382	0.72071	57.382	57.16	57.881	0					53	25	3	0	0	0	0.0093779	2	12551	12551;12595		69.105	29.155	1	673070			11821	3147	7784	7843	16203;16204	16203					0.04326054068940266
LPVQPENAL	9	Unmodified	_LPVQPENAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7742004394531	2	490.7742	979.533846	0.35892	0.00017615	0.15756	7.7325E-05	0.51648	0.00025347	490.7741965037523	57.316	0.54316	57.384	57.181	57.724	0.068375					51	20	3	0	0	0	0.029291	1	12389	12389		51.63	18.844	1	498820			11822	3147	7784	7843	16205	16205					0.04326054068940266
LPVSEVASIL	10	Unmodified	_LPVSEVASIL_					0	0	0		nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.3054809570312	2	514.305332	1026.59611	0.86361	0.00044416	-0.3765	-0.00019363	0.48711	0.00025053	514.305121180999	80.721	0.41821	80.721	80.513	80.931	0					27	14	2	0	0	0	0.30966	1	19695	19695		21.537	4.4241	1	111020			11823	464	7785	7844	16206	16206					0.08387780417297108
LPVSEVASIL	10	Unmodified	_LPVSEVASIL_					0	0	0		nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.30615234375	2	514.305332	1026.59611	0.68777	0.00035372	-0.50835	-0.00026145	0.17942	9.2277E-05	514.305016312701	80.726	0.4086	80.75	80.531	80.94	0.023605					20	13	2	0	0	0	0.12944	1	19513	19513		41.84	5.7126	1	98300			11824	464	7785	7844	16207	16207					0.08387780417297108
LPVSLFASN	9	Unmodified	_LPVSLFASN_					0	0	0			REV__ENST00000413422.4_1_19:44085374-44085893:+|nuORF	REV__ENST00000413422.4_1_19:44085374-44085893:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2281799316406	2	474.263468	946.512382	0.04604	2.1835E-05	-0.15064	-7.1444E-05	-0.1046	-4.9609E-05	474.26332544680866	48.025	0.51568	48.025	47.795	48.311	0					23	17	2	0	0	0	0.24929	1	9705	9705		9.3831	0.63772	1	45702	+		11825	11045	7786	7845	16208	16208					0.03698669040227287
LPVTEAQQL	9	Unmodified	_LPVTEAQQL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion;BIRC6-SPAST|2|fusion	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.25885009765625	2	499.779482	997.544411	0.56088	0.00028032	-0.62559	-0.00031266	-0.06471	-3.2341E-05	499.77901004474336	54.017	0.42638	54.017	53.841	54.267	0					27	14	3	0	0	0	0.099539	1	11532	11532		45.7	11.298	1	213040			11826	89	7787	7846	16209	16209					0.04554036723379795
LPVTEAQQL	9	Unmodified	_LPVTEAQQL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion;BIRC6-SPAST|2|fusion	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2586364746094	2	499.779482	997.544411	0.52675	0.00026326	-0.66596	-0.00033283	-0.13921	-6.9576E-05	499.7791105202904	53.976	0.3877	54.041	53.866	54.254	0.065128					28	14	3	0	0	0	0.16392	1	11393	11393		32.786	9.6373	1	153550			11827	89	7787	7846	16210	16210					0.04554036723379795
LPVTFFAHL	9	Unmodified	_LPVTFFAHL_					0	0	0		ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7825317382812	2	522.797478	1043.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35	1	35	34.5	35.5	0								0	0	0	0.24995	1	5786	5786		9.3474	1.4373	1				11828	4627	7788	7847	16211	16211					0.060355386908895525
LPVTNNIIE	9	Unmodified	_LPVTNNIIE_					0	0	0			REV__ENST00000557781.5_1_12:57498159-57499088:-|nuORF	REV__ENST00000557781.5_1_12:57498159-57499088:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.78668212890625	2	506.787307	1011.56006	-0.55284	-0.00028017	-0.4533	-0.00022973	-1.0061	-0.0005099	506.78694133587675	41.325	0.42401	41.325	41.126	41.55	0					36	14	4	0	0	0	0.03472	1	7691	7691		47.749	3.9763	1	151020	+		11829	10098	7789	7848	16212	16212					0.05474323240434842
LPVTNNIIE	9	Unmodified	_LPVTNNIIE_					0	0	0			REV__ENST00000557781.5_1_12:57498159-57499088:-|nuORF	REV__ENST00000557781.5_1_12:57498159-57499088:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	506.787307	1011.56006	-0.55284	-0.00028017	-0.4533	-0.00022973	-1.0061	-0.0005099	506.78694133587675	41.325	0.42401	41.325	41.126	41.55	0	-0.0021054	2.0352E-05	NaN	47.749	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151020	+		11830	10098	7789	7848							0.05474323240434842
LPVTTTPSLS	10	Unmodified	_LPVTTTPSLS_					0	0	0		ENST00000357203.7_1_3:50604919-50605126:-|nuORF	ENST00000357203.7_1_3:50604919-50605126:-|nuORF	ENST00000357203.7_1_3:50604919-50605126:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2869567871094	2	508.28714	1014.55973	0.03916	1.9904E-05	-0.86148	-0.00043788	-0.82232	-0.00041797	508.2866483888955	46.355	0.28912	46.355	46.207	46.496	0					14	9	2	0	0	0	0.33099	1	9220	9220		19.257	0	1	67927			11831	6129	7790	7849	16213	16213					0.05302903520566815
LPVVDFNEM	9	Oxidation (M)	_LPVVDFNEM(Oxidation (M))_		LPVVDFNEM(1)		LPVVDFNEM(120)	0	0	1		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2577514648438	2	540.257525	1078.5005	0.51234	0.00027679	0.056044	3.0278E-05	0.56838	0.00030707	540.2576175085242	68.802	1.0017	68.802	68.442	69.443	0					64	36	3	0	0	0	0.0010793	3	16041	16041;16094;16127		122.18	77.772	1	231500			11832	1939	7791	7850	16214;16215;16216	16214		114			-0.03561315765273321
LPVVDFNEM	9	Oxidation (M)	_LPVVDFNEM(Oxidation (M))_		LPVVDFNEM(1)		LPVVDFNEM(110)	0	0	1		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2579345703125	2	540.257525	1078.5005	0.41446	0.00022392	0.15639	8.4493E-05	0.57085	0.00030841	540.2575759618536	68.742	0.67435	68.804	68.559	69.233	0.062126					55	25	3	0	0	0	0.0028323	3	15916	15861;15916;15973		110.67	86.001	1	219540			11833	1939	7791	7850	16217;16218;16219	16218		114			-0.03561315765273321
LPVVDFNEM	9	Unmodified	_LPVVDFNEM_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2717895507812	2	532.260068	1062.50558	0.35576	0.00018936	-0.12043	-6.4103E-05	0.23533	0.00012526	532.2600122600924	77.045	0.27654	77.045	76.867	77.144	0					14	9	2	0	0	0	0.083124	1	18540	18540		36.127	17.992	1	93908			11834	1939	7791	7851	16220	16220					-0.023170119026417524
LPVVDFNEM	9	Unmodified	_LPVVDFNEM_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8204345703125	2	532.260068	1062.50558	0.52511	0.0002795	0.072307	3.8486E-05	0.59742	0.00031798	532.2602408747988	76.972	0.30241	77.011	76.853	77.155	0.039032					15	10	2	0	0	0	0.18759	1	18394	18394		27.629	12.791	1	100490			11835	1939	7791	7851	16221	16221					-0.023170119026417524
LPVVTEPP	8	Unmodified	_LPVVTEPP_					0	0	0		ENST00000488011.1_1_1:1260621-1260936:+|nuORF	ENST00000488011.1_1_1:1260621-1260936:+|nuORF	ENST00000488011.1_1_1:1260621-1260936:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.2469787597656	2	426.247286	850.48002	0.33183	0.00014144	-0.75377	-0.00032129	-0.42193	-0.00017985	426.2469429385227	100.22	0.48138	100.27	100.05	100.54	0.042839					43	25	2	0	0	0	0.54081	1	25497	25497		0.79363	0	1	222870			11836	6795	7792	7852	16222	16222					0.048798816372254805
LPWAEFESL	9	Unmodified	_LPWAEFESL_					0	0	0		nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2741088867188	2	546.274032	1090.53351	0.27907	0.00015245	-0.24715	-0.00013501	0.031921	1.7437E-05	546.2739553635946	87.238	0.95085	87.238	86.932	87.883	0					99	37	4	0	0	0	0.0025191	1	21651	21651		112.59	80.288	1	1375900			11837	3098	7793	7853	16223	16223					-0.008133656509016873
LPWAEFESL	9	Unmodified	_LPWAEFESL_					0	0	0		nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.27392578125	2	546.274032	1090.53351	0.20772	0.00011347	-0.15322	-8.3699E-05	0.0545	2.9772E-05	546.2739832935952	87.212	0.79945	87.239	87.021	87.821	0.027573					100	31	4	0	0	0	0.00087032	1	21478	21478		125.62	85.667	1	1295100			11838	3098	7793	7853	16224	16224					-0.008133656509016873
LPWAGQLLF	9	Unmodified	_LPWAGQLLF_					0	0	0			REV__nc|ENSG00000240403|P43630-2|KIR3DL2	REV__nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3284912109375	2	522.797478	1043.5804	0.25857	0.00013518	1.5553	0.00081312	1.8139	0.0009483	522.7971324666217	78.425	0.20506	78.425	78.335	78.54	0					8	6	2	0	0	0	0.22289	1	19006	19006		18.135	0	1	47817	+		11839	11057	7794	7854	16225	16225					0.060355386908895525
LPWCLDLT	8	Unmodified	_LPWCLDLT_					0	0	0		ENST00000470940.5_1_2:231314159-231314255:+|nuORF	ENST00000470940.5_1_2:231314159-231314255:+|nuORF	ENST00000470940.5_1_2:231314159-231314255:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.74615478515625	2	480.746596	959.478639	0.035233	1.6938E-05	-2.1203	-0.0010193	-2.0851	-0.0010024	480.7454121256652	77.454	1.3596	77.454	76.975	78.335	0					130	53	3	0	0	0	0.41225	1	18896	18896		24.674	1.5255	1	1304500			11840	6665	7795	7855	16226	16226					-0.002720757231713833
LPWCLDLT	8	Unmodified	_LPWCLDLT_					0	0	0		ENST00000470940.5_1_2:231314159-231314255:+|nuORF	ENST00000470940.5_1_2:231314159-231314255:+|nuORF	ENST00000470940.5_1_2:231314159-231314255:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7473449707031	2	480.746596	959.478639	0.16669	8.0133E-05	-2.0709	-0.0009956	-1.9043	-0.00091547	480.7454070864658	77.389	1.4224	77.423	77.087	78.509	0.034485					123	54	4	0	0	0	0.39998	2	18709	18709;18728		26.341	3.1929	1	1281300			11841	6665	7795	7855	16227;16228	16227					-0.002720757231713833
LPWEDDKEA	9	Unmodified	_LPWEDDKEA_					0	0	0		ENST00000456917.1_1_21:26946366-26946426:+|nuORF	ENST00000456917.1_1_21:26946366-26946426:+|nuORF	ENST00000456917.1_1_21:26946366-26946426:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7545776367188	2	551.756204	1101.49785	0.40009	0.00022075	-3.0741	-0.0016962	-2.674	-0.0014754	551.7552368647989	36.765	0.87065	36.847	36.34	37.211	0.081715					87	35	4	0	0	0	0.24767	1	6203	6203		13.042	2.2185	1	84191			11842	6590	7796	7856	16229	16229					-0.0488344789855546
LPWEQPCGSS	10	Unmodified	_LPWEQPCGSS_					0	0	0		ENST00000590278.1_1_19:33696051-33698478:+|nuORF;ENSG00000130881|ENST00000253193|LRP3	ENST00000590278.1_1_19:33696051-33698478:+|nuORF	ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2451782226562	2	552.244949	1102.47534	0.34506	0.00019056	0.51716	0.0002856	0.86222	0.00047616	552.2448627676015	35.76	1.0093	35.838	35.596	36.605	0.078827					60	39	2	0	0	0	0.46656	1	6052	6052		1.6526	0	1	90567			11843	2503	7797	7857	16230	16230					-0.07179370567814658
LPWPRPSR	8	Unmodified	_LPWPRPSR_					0	0	0			REV__ENST00000381582.3_1_4:47033695-47034813:+|nuORF	REV__ENST00000381582.3_1_4:47033695-47034813:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.791015625	2	504.790518	1007.56648	0.24588	0.00012412	0.64428	0.00032523	0.89016	0.00044934	504.7908071783058	94.788	0.52885	94.788	94.566	95.095	0					47	20	3	0	0	0	0.51415	1	23994	23994		10.824	0	1	274070	+		11844	11673	7798	7858	16231	16231					0.0630030598247231
LPWPRPSR	8	Unmodified	_LPWPRPSR_					0	0	0			REV__ENST00000381582.3_1_4:47033695-47034813:+|nuORF	REV__ENST00000381582.3_1_4:47033695-47034813:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	504.790518	1007.56648	0.20974	0.00010587	0.70134	0.00035403	0.91107	0.0004599	504.79078682894414	94.74	0.49815	94.778	94.544	95.042	0.038086	-0.0051318	2.551E-05	NaN	10.824	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262220	+		11845	11673	7798	7858							0.0630030598247231
LPWSKAWEL	9	Unmodified	_LPWSKAWEL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3058471679688	2	565.305667	1128.59678	0.35667	0.00020163	0.087764	4.9614E-05	0.44443	0.00025124	565.3056064945581	71.191	1.5472	71.191	70.861	72.409	0					112	53	4	0	0	0	0.002259	3	16780	16734;16780;16827		114.19	64.253	1	2806900			11846	1204	7799	7859	16232;16233;16234	16233					0.03762619857002392
LPWSKAWEL	9	Unmodified	_LPWSKAWEL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3057861328125	2	565.305667	1128.59678	0.45348	0.00025636	-0.049428	-2.7942E-05	0.40406	0.00022841	565.305572274229	71.087	1.5705	71.146	70.862	72.433	0.058578					121	56	4	0	0	0	0.00021732	2	16600	16600;16642		136.39	77.713	1	3602600			11847	1204	7799	7859	16235;16236	16235					0.03762619857002392
LPYESAVFAF	10	Unmodified	_LPYESAVFAF_					0	0	0			REV__PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	REV__PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8064575195312	2	572.289682	1142.56481	0.17255	9.8751E-05	-2.4993	-0.0014303	-2.3268	-0.0013316	572.2880713110239	103.49	0.37704	103.49	103.29	103.67	0					47	33	2	0	0	0	0.31803	1	26555	26555		3.2813	0	1	196790	+		11848	8799	7800	7860	16237	16237					-0.0007679261680095806
LPYGREDVL	9	Unmodified	_LPYGREDVL_					0	0	0		CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant;nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS	CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant	CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2848510742188	2	531.284931	1060.55531	0.22009	0.00011693	0.00087071	4.626E-07	0.22097	0.0001174	531.2848074567544	49.727	0.81187	49.727	49.508	50.32	0					56	28	3	0	0	0	0.0089808	2	10216	10216;10274		70.332	38.027	1	660880			11849	256	7801	7861	16238;16239	16238					0.02745439097657254
LPYGREDVL	9	Unmodified	_LPYGREDVL_					0	0	0		CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant;nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS	CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant	CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2845458984375	2	531.284931	1060.55531	0.29297	0.00015565	-0.11307	-6.007E-05	0.17991	9.5582E-05	531.2847376808255	49.648	0.61695	49.724	49.512	50.129	0.076607					49	21	3	0	0	0	0.020768	2	10062	10062;10110		57.722	25.416	1	557670			11850	256	7801	7861	16240;16241	16240					0.02745439097657254
LPYGREDVL	9	Unmodified	_LPYGREDVL_					0	0	0		CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant;nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS	CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant	CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	531.284931	1060.55531	0.29297	0.00015565	-0.11307	-6.007E-05	0.17991	9.5582E-05	531.2847376808255	49.648	0.61695	49.724	49.512	50.129	0.076607	-0.0013503	-7.7589E-05	NaN	70.332	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557670			11851	256	7801	7861							0.02745439097657254
LPYIPIIICF	10	Unmodified	_LPYIPIIICF_					0	0	0			REV__ENST00000586995.5_3_17:67249715-67270153:-|nuORF	REV__ENST00000586995.5_3_17:67249715-67270153:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7911376953125	2	596.345946	1190.67734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.47	1	102.47	101.97	102.97	0								0	0	0	0.33861	1	26297	26297		1.8442	0	1		+		11852	9710	7802	7862	16242	16242					0.08962764855687055
LPYNKPLD	8	Unmodified	_LPYNKPLD_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2657165527344	2	480.263468	958.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.316	1	99.316	98.816	99.816	0								0	0	0	0.38822	1	25337	25337		4.3292	0	1		+		11853	11086	7803	7863	16243	16243					0.031466690402339736
LPYREGSLK	9	Unmodified	_LPYREGSLK_					0	0	0		ENST00000422481.5_1_3:14563134-14563311:-|nuORF	ENST00000422481.5_1_3:14563134-14563311:-|nuORF	ENST00000422481.5_1_3:14563134-14563311:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.80078125	2	531.800749	1061.58694	0.12019	6.3915E-05	-0.22403	-0.00011914	-0.10384	-5.5224E-05	531.8004821357298	43.988	1.1008	44.077	43.683	44.784	0.088924					85	38	3	0	0	0	0.22912	1	8329	8329		18.146	0	1	214420			11854	6456	7804	7864	16244	16244					0.058614318515992636
LPYRPDSR	8	Unmodified	_LPYRPDSR_					0	0	0		nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-2|ABLIM1	nc|ENSG00000099204|O14639-2|ABLIM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2418212890625	2	502.269616	1002.52468	0.27784	0.00013955	-0.17263	-8.6709E-05	0.10521	5.2842E-05	502.2695287952293	38.531	0.26104	38.531	38.396	38.657	0					11	8	2	0	0	0	0.3576	1	6876	6876		8.5933	0	1	18322			11855	1121	7805	7865	16245	16245					0.023517055032812095
LPYTATIEDIL	11	Unmodified	_LPYTATIEDIL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.83935546875	2	624.839736	1247.66492	0.17986	0.00011239	0.55447	0.00034645	0.73433	0.00045884	624.8396623253627	88.45	0.58648	88.45	88.204	88.791	0					35	23	3	0	0	0	0.21105	2	22013	22013;22059		28.495	13.246	1	771280			11856	1351	7806	7866	16246;16247	16246					0.05099399926325532
LPYTATIEDIL	11	Unmodified	_LPYTATIEDIL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.839599609375	2	624.839736	1247.66492	0.28484	0.00017798	-0.14	-8.7475E-05	0.14484	9.0505E-05	624.8394941467492	88.402	0.59108	88.432	88.11	88.701	0.030037					37	23	2	0	0	0	0.091297	2	21844	21844;21890		47.594	22.603	1	447420			11857	1351	7806	7866	16248;16249	16248					0.05099399926325532
LPYVCRKP	8	Unmodified	_LPYVCRKP_					0	0	0		LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF;LY75|p.Y933Ifs*2|1|0.33|ENSG00000054219|chr2:159852287-159852288|-/T|frameshift_variant	LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2781982421875	2	488.275855	974.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.374	1	70.435	69.935	70.935	0.060562								0	0	0	0.38822	1	16366	16366		13.508	0.97634	1				11858	600	7807	7867	16250	16250					0.04887025641960463
LPYVQIFY	8	Unmodified	_LPYVQIFY_					0	0	0		nc|ENSG00000114378|Q12794-5|HYAL1;nc|ENSG00000114378|Q12794-3|HYAL1;nc|ENSG00000114378|Q12794-7|HYAL1;nc|ENSG00000114378|Q12794-2|HYAL1;ENSG00000114378|ENST00000395144|HYAL1	nc|ENSG00000114378|Q12794-5|HYAL1	nc|ENSG00000114378|Q12794-5|HYAL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7742309570312	2	521.784036	1041.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.84	1	37.924	37.424	38.424	0.084476								0	0	0	0.38796	1	6516	6516		14.582	2.9414	1				11859	1841	7808	7868	16251	16251					0.03440430079695034
LPYWEVAL	8	Unmodified	_LPYWEVAL_					0	0	0		nc|ENSG00000130023|Q5T6L9-4|ERMARD;nc|ENSG00000130023|Q5T6L9-2|ERMARD;nc|ENSG00000130023|Q5T6L9-3|ERMARD;ENSG00000130023|ENST00000366773|ERMARD	nc|ENSG00000130023|Q5T6L9-4|ERMARD	nc|ENSG00000130023|Q5T6L9-4|ERMARD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.76861572265625	2	495.768386	989.522219	0.75477	0.00037419	-0.34079	-0.00016895	0.41398	0.00020524	495.7682341623928	85.381	0.56473	85.405	85.183	85.748	0.023132					51	22	3	0	0	0	0.46036	1	20973	20973		18.135	3.2967	1	317110			11860	2447	7809	7869	16252	16252					0.027038570456056732
LQDSTGNF	8	Unmodified	_LQDSTGNF_					0	0	0		ENST00000354870.5_1_8:22035226-22069238:+|nuORF;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENSG00000168487|ENST00000306385|BMP1;ENST00000523457.5_1_8:22037227-22049699:+|nuORF;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1	ENST00000354870.5_1_8:22035226-22069238:+|nuORF	ENST00000354870.5_1_8:22035226-22069238:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.20343017578125	2	441.203607	880.392661	0.3044	0.0001343	0.22554	9.951E-05	0.52994	0.00023381	441.2036261062914	36.02	1.5136	36.02	35.705	37.219	0					158	59	4	0	0	0	0.53858	1	6278	6278		2.3027	0	1	1504800			11861	4294	7810	7870	16253	16253					-0.0523194430430749
LQDSVDFSL	9	Unmodified	_LQDSVDFSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2523803710938	2	512.253297	1022.49204	0.24812	0.0001271	-1.3415	-0.00068721	-1.0934	-0.00056011	512.2523852201025	58.208	0.65049	58.279	57.943	58.593	0.070477					31	23	3	0	0	0	0.14091	1	12619	12619		25.399	3.6527	1	261280			11862	494	7811	7871	16254	16254					-0.018305464102354563
LQEAQEIF	8	Unmodified	_LQEAQEIF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2503967285156	2	489.250557	976.486562	0.47698	0.00023336	0.076575	3.7464E-05	0.55355	0.00027083	489.2505853378313	98.279	0.34331	98.279	98.087	98.431	0					29	17	2	0	0	0	0.4772	1	24987	24987		15.847	0	1	92723			11863	1624	7812	7872	16255	16255					-0.00262225202038735
LQEEKQHLEN	10	Unmodified	_LQEEKQHLEN_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3174438476562	2	634.317491	1266.62043	-0.11648	-7.3883E-05	0.19102	0.00012117	0.074543	4.7284E-05	634.317671501866	30.143	0.29778	30.219	30.088	30.386	0.075403					23	19	2	0	0	0	0.47119	1	4210	4210		0	0	1	17860			11864	486	7813	7873	16256	16256					-0.002216111671486942
LQEELWML	8	Unmodified	_LQEELWML_					0	0	0			REV__MYT1L|p.R384W|1|0.1|ENSG00000186487|chr2:1922619-1922619|G/A|missense_variant	REV__MYT1L|p.R384W|1|0.1|ENSG00000186487|chr2:1922619-1922619|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3191528320312	2	531.270435	1060.52632	0.27551	0.00014637	0.75968	0.0004036	1.0352	0.00054997	531.270703402842	89.164	0.095901	89.164	89.098	89.194	0					5	3	2	0	0	0	0.3576	1	22255	22255		2.0598	0	1	21385	+		11865	12741	7814	7874	16257	16257					-0.0015242152298924339
LQEHNLANYL	10	Unmodified	_LQEHNLANYL_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3	ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.8120727539062	2	607.811845	1213.60914	0.66292	0.00040293	-0.21829	-0.00013268	0.44464	0.00027026	607.8116196920871	38.228	0.53365	38.315	38.118	38.652	0.08688					44	19	3	0	0	0	0.45632	1	6603	6603		1.4819	0	1	162580			11866	5384;5416	7815	7875	16258	16258					0.01087611529374044
LQEVLGVQT	9	Unmodified	_LQEVLGVQT_					0	0	0		DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant;ENSG00000105204|ENST00000323039|DYRK1B	DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2636413574219	2	493.779482	985.544411	0.12342	6.0941E-05	-0.45878	-0.00022654	-0.33536	-0.0001656	493.7791809225644	34.291	0.44537	34.291	34.123	34.568	0					38	17	3	0	0	0	0.24101	1	5572	5572		15.248	1.3424	1	93306			11867	306	7816	7876	16259	16259					0.05106036723384477
LQFELICTRH	10	Unmodified	_LQFELICTRH_					0	0	0		ENST00000473039.5_1_9:126143232-126143415:-|nuORF	ENST00000473039.5_1_9:126143232-126143415:-|nuORF	ENST00000473039.5_1_9:126143232-126143415:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8607788085938	2	630.33189	1258.64923	0.08368	5.2746E-05	-3.0115	-0.0018982	-2.9278	-0.0018455	630.3299130278649	90.133	0.50058	90.133	90.101	90.602	0					33	20	2	0	0	0	0.31747	1	22550	22550		5.7319	0.43497	1	410800			11868	6687	7817	7877	16260	16260					0.030248349283056086
LQFLYSICL	9	Unmodified	_LQFLYSICL_					0	0	0		nc|ENSG00000144445|A0AUZ9-3|KANSL1L	nc|ENSG00000144445|A0AUZ9-3|KANSL1L	nc|ENSG00000144445|A0AUZ9-3|KANSL1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2963256835938	2	550.296453	1098.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.636	1	87.666	87.166	88.166	0.030037								0	0	0	0.16041	1	21626	21626		24.021	0.87215	1				11869	7520	7818	7878	16261	16261					0.03300741890757308
LQFYFFCTF	9	Unmodified	_LQFYFFCTF_					0	0	0		ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.2803344726562	2	608.280803	1214.54705	0.61087	0.00037158	-1.8227	-0.0011087	-1.2118	-0.00073713	608.2793041069581	55.678	0.53808	55.678	55.441	55.979	0					55	18	4	0	0	0	0.18364	1	12056	12056		20.454	0.039092	1	364060			11870	4235	7819	7879	16262	16262					-0.051638311433180206
LQFYFFCTF	9	Unmodified	_LQFYFFCTF_					0	0	0		ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	608.280803	1214.54705	0.62598	0.00038077	-1.8089	-0.0011003	-1.1829	-0.00071954	608.2795734540159	55.607	0.51701	55.672	55.463	55.98	0.065128	-0.0026568	9.1819E-06	NaN	20.454	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292990			11871	4235	7819	7879							-0.051638311433180206
LQGENWLSW	9	Unmodified	_LQGENWLSW_					0	0	0		ENST00000592790.1_1_17:57917110-57917269:+|nuORF	ENST00000592790.1_1_17:57917110-57917269:+|nuORF	ENST00000592790.1_1_17:57917110-57917269:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2779541015625	2	566.774731	1131.53491	0.29662	0.00016812	1.4781	0.00083772	1.7747	0.0010058	566.7749085466561	104.81	0.40749	104.84	104.66	105.07	0.034004					72	44	2	0	0	0	0.30757	1	26853	26853		5.7319	0.43497	1	60227			11872	7275	7820	7880	16263	16263					-0.025597315621553207
LQGGAHLLH	9	Unmodified	_LQGGAHLLH_					0	0	0		nc|ENSG00000168237|Q8IVS8-6|GLYCTK;ENST00000489173.1_1_3:52325707-52327139:+|nuORF;nc|ENSG00000168237|Q8IVS8-3|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK	nc|ENSG00000168237|Q8IVS8-6|GLYCTK	nc|ENSG00000168237|Q8IVS8-6|GLYCTK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.718505859375	2	473.266876	944.519199	-0.21677	-0.00010259	-1.2048	-0.00057019	-1.4216	-0.00067278	473.2661824813579	34.5	0.31225	34.5	34.337	34.65	0					18	11	2	0	0	0	0.25579	1	5618	5618		4.3292	1.7518	1	30918			11873	4272	7821	7881	16264	16264					0.044720267114598755
LQGRFGCEI	9	Unmodified	_LQGRFGCEI_					0	0	0		ENSG00000160862|ENST00000292401|AZGP1	ENSG00000160862|ENST00000292401|AZGP1	ENSG00000160862|ENST00000292401|AZGP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7589111328125	2	511.758027	1021.5015	0.52868	0.00027055	3.66	0.001873	4.1887	0.0021436	511.75960681768555	64.253	0.43715	64.253	63.972	64.409	0					23	14	2	0	0	0	0.037705	1	14644	14644		46.021	2.1627	1	186950			11874	3781	7822	7882	16265	16265					-0.008390566056846183
LQGYKNRN	8	Unmodified	_LQGYKNRN_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.76715087890625	2	496.76724	991.519927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.038	1	19.038	18.538	19.538	0								0	0	0	0.38822	1	1265	1265		0.69038	0	1				11875	4304	7823	7883	16266	16266					0.023828213605156634
LQGYKNRN	8	Unmodified	_LQGYKNRN_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2688903808594	2	496.76724	991.519927	0.23482	0.00011665	-0.14883	-7.3932E-05	0.085992	4.2718E-05	496.7671418253471	18.965	0.24042	19.055	18.955	19.196	0.089705					41	27	2	0	0	0	0.54097	1	1153	1153		0.69038	0	1	25649			11876	4304	7823	7883	16267	16267					0.023828213605156634
LQHQVPPQ	8	Unmodified	_LQHQVPPQ_					0	0	0		nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant;PAXIP1|p.I1044Nfs*21|1|0.27|ENSG00000157212|chr7:154946514-154946515|-/T|frameshift_variant	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7586364746094	2	473.758884	945.503215	-0.39381	-0.00018657	0.20205	9.5722E-05	-0.19176	-9.0847E-05	473.7588001830496	27.116	0.40455	27.203	27.044	27.448	0.0867					52	27	3	0	0	0	0.53494	1	3328	3328		4.756	0	1	62975			11877	3652	7824	7884	16268	16268					0.02828320474566226
LQHQVPPQ	8	Unmodified	_LQHQVPPQ_					0	0	0		nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant;PAXIP1|p.I1044Nfs*21|1|0.27|ENSG00000157212|chr7:154946514-154946515|-/T|frameshift_variant	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	473.758884	945.503215	-0.41767	-0.00019787	0.515	0.00024398	0.097329	4.6111E-05	473.7586237724608	27.224	0.35909	27.224	27.085	27.445	0	0.010195	0.00024075	NaN	4.756	48	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63461			11878	3652	7824	7884							0.02828320474566226
LQKATITT	8	Unmodified	_LQKATITT_					0	0	0			REV__LHX4|p.R159G|1|0.14|ENSG00000121454|chr1:180271403-180271403|C/G|missense_variant	REV__LHX4|p.R159G|1|0.14|ENSG00000121454|chr1:180271403-180271403|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5654602050781	2	438.263468	874.512382	-0.42206	-0.00018497	-0.37966	-0.00016639	-0.80173	-0.00035137	438.26317430251976	41.878	0.92872	41.878	41.291	42.22	0					48	33	2	0	0	0	0.3576	1	7744	7744		0.79363	0	1	53993	+		11879	8588	7825	7885	16269	16269					0.07010669040209905
LQKKTLKVIY	10	Unmodified	_LQKKTLKVIY_					0	0	0		ENST00000277541.6_1_9:139388956-139389136:-|nuORF	ENST00000277541.6_1_9:139388956-139389136:-|nuORF	ENST00000277541.6_1_9:139388956-139389136:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.412353515625	2	617.400099	1232.78564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.308	1	70.369	69.869	70.869	0.060562								0	0	0	0.33892	1	16347	16347		1.4819	0.28856	1				11880	5924	7826	7886	16270	16270					0.17856272430481113
LQKMLCLH	8	Unmodified	_LQKMLCLH_					0	0	0		nc|ENSG00000101247|Q5TEU4-2|NDUFAF5	nc|ENSG00000101247|Q5TEU4-2|NDUFAF5	nc|ENSG00000101247|Q5TEU4-2|NDUFAF5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.22698974609375	2	493.269716	984.524878	0.088503	4.3656E-05	-1.6787	-0.00082806	-1.5902	-0.00078441	493.2687218302972	46.121	0.4286	46.121	45.955	46.384	0					17	14	2	0	0	0	0.3576	1	9186	9186		5.2307	0	1	30113			11881	7471	7827	7887	16271	16271					0.031996659072660805
LQKVALVLV	9	Unmodified	_LQKVALVLV_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.8365783691406	2	491.836603	981.658653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.777	1	92.814	92.314	93.314	0.037369								0	0	0	0.28527	1	23188	23188		2.0598	0	1		+		11882	8089	7828	7888	16272	16272					0.1670897127611397
LQLEMDAL	8	Unmodified	_LQLEMDAL_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.7414855957031	2	466.741511	931.468469	0.41103	0.00019184	-0.87156	-0.00040679	-0.46053	-0.00021495	466.74108134013943	60.673	1.4027	60.673	60.045	61.447	0					71	50	2	0	0	0	0.53118	1	13478	13478		7.2892	0	1	140810	+		11883	7943	7829	7889	16273	16273					-6.8344842247825E-06
LQLHDPLLR	9	Unmodified	_LQLHDPLLR_					0	0	0			REV__ENSG00000122557|ENST00000311350|HERPUD2	REV__ENSG00000122557|ENST00000311350|HERPUD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7955322265625	2	552.82984	1103.64513	0.29707	0.00016423	0.24517	0.00013554	0.54224	0.00029977	552.8302978968636	50.837	0.43744	50.837	50.624	51.062	0					36	14	4	0	0	0	0.25052	1	10625	10625		8.7454	0	1	367990	+		11884	8918	7830	7890	16274	16274					0.09745113496887825
LQLHRVFLA	9	Unmodified	_LQLHRVFLA_					0	0	0		ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3184204101562	2	548.834926	1095.6553	0.3576	0.00019626	1.0433	0.00057261	1.4009	0.00076887	548.8350433949313	109.78	0.15933	109.8	109.76	109.92	0.017242					24	20	2	0	0	0	0.25845	1	28104	28104		2.0598	0	1	1279500			11885	5688	7831	7891	16275	16275					0.11129721222141598
LQLVPDENLLQ	11	Unmodified	_LQLVPDENLLQ_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3370971679688	2	641.356085	1280.69762	0.33834	0.000217	-1.6812	-0.0010782	-1.3428	-0.00086124	641.8563009583587	74.653	0.39726	74.653	74.426	74.823	0					32	14	3	0	0	0	0.36299	1	17812	17812		10.8	3.1906	1	208810	+		11886	8846	7832	7892	16276	16276					0.0684960704918467
LQLVPDENLLQ	11	Unmodified	_LQLVPDENLLQ_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	641.356085	1280.69762	0.33834	0.000217	-1.6812	-0.0010782	-1.3428	-0.00086124	641.8563009583587	74.653	0.39726	74.653	74.426	74.823	0	0.022359	-0.0004328	NaN	10.8	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208810	+		11887	8846	7832	7892							0.0684960704918467
LQLVPDENLLQ	11	Unmodified	_LQLVPDENLLQ_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	641.356085	1280.69762	0.32913	0.00021109	-0.77497	-0.00049703	-0.44585	-0.00028595	641.3556462824334	74.56	0.36569	74.609	74.45	74.816	0.048538	-0.022359	0.0007296	NaN	10.8	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140260	+		11888	8846	7832	7892							0.0684960704918467
LQMLGVALGF	10	Unmodified	_LQMLGVALGF_					0	0	0			REV__nc|ENSG00000152904|O95749-2|GGPS1	REV__nc|ENSG00000152904|O95749-2|GGPS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7966918945312	2	524.79662	1047.57869	0.55195	0.00028966	-0.4913	-0.00025783	0.060654	3.1831E-05	524.7963633437344	64.881	0.84451	64.881	64.601	65.446	0					64	30	3	0	0	0	0.40987	1	14935	14935		10.824	0	1	151270	+		11889	9683	7833	7893	16277	16277					0.05680161610621326
LQNEHQQL	8	Unmodified	_LQNEHQQL_					0	0	0		nc|ENSG00000056487|Q96EK2-4|PHF21B;nc|ENSG00000056487|Q96EK2-3|PHF21B;ENSG00000056487|ENST00000313237|PHF21B	nc|ENSG00000056487|Q96EK2-4|PHF21B	nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.256591796875	2	505.256705	1008.49886	-0.135	-6.8212E-05	-0.24329	-0.00012293	-0.3783	-0.00019114	505.2567379843713	25.886	0.41435	25.977	25.824	26.238	0.091507					95	36	4	0	0	0	0.39599	1	2994	2994		26.884	3.7352	1	94328			11890	618	7834	7894	16278	16278					-0.005051887389981857
LQNFYRKNDL	10	Unmodified	_LQNFYRKNDL_					0	0	0			REV__tr|U7SMA9|U7SMA9_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01884PE=4SV=1	REV__tr|U7SMA9|U7SMA9_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01884PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5654602050781	3	437.566571	1309.67788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.499	1	41.499	40.999	41.999	0								0	0	0	0.33952	1	7744	7744		0.77653	0	1		+		11891	13084	7835	7895	16279	16279					0.035432758290880884
LQNHVFPLF	9	Unmodified	_LQNHVFPLF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8059692382812	2	557.805834	1113.59712	0.47242	0.00026352	-0.59802	-0.00033358	-0.12559	-7.0057E-05	557.8048611242708	71.523	0.89575	71.582	71.288	72.184	0.058578					63	31	3	0	0	0	0.05573	1	16729	16729		42.095	5.6284	1	650320			11892	5516	7836	7896	16280	16280					0.04486039576818257
LQNLHIYLH	9	Unmodified	_LQNLHIYLH_					0	0	0			REV__PXDNL|p.F131L|1|0.23|ENSG00000147485|chr8:51499758-51499758|G/C|missense_variant	REV__PXDNL|p.F131L|1|0.23|ENSG00000147485|chr8:51499758-51499758|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7982177734375	2	575.822015	1149.62948	0.19104	0.00011001	2.6126	0.0015044	2.8036	0.0016144	575.8237630561629	50.008	0.35648	50.008	49.85	50.206	0					18	12	2	0	0	0	0.25845	1	10366	10366		2.0598	0.40713	1	80848	+		11893	12969	7837	7897	16281	16281					0.06064826979832105
LQNLHIYLH	9	Unmodified	_LQNLHIYLH_					0	0	0			REV__PXDNL|p.F131L|1|0.23|ENSG00000147485|chr8:51499758-51499758|G/C|missense_variant	REV__PXDNL|p.F131L|1|0.23|ENSG00000147485|chr8:51499758-51499758|G/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	575.822015	1149.62948	0.24043	0.00013845	3.2553	0.0018745	3.4958	0.0020129	575.8238298415464	49.95	0.28357	50.023	49.868	50.152	0.07312	0.007824	0.00023013	NaN	2.0598	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98702	+		11894	12969	7837	7897							0.06064826979832105
LQNLIMGLF	9	Unmodified	_LQNLIMGLF_					0	0	0		ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.79638671875	2	524.79662	1047.57869	0.55195	0.00028966	-0.4913	-0.00025783	0.060654	3.1831E-05	524.7963633437344	64.881	0.84451	64.881	64.601	65.446	0					64	30	3	0	0	0	0.16036	1	14876	14876		23.148	0	1	151270			11895	2890	7838	7898	16282	16282					0.05680161610621326
LQNLIMGLF	9	Unmodified	_LQNLIMGLF_					0	0	0		ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7967529296875	2	524.79662	1047.57869	0.33526	0.00017595	0.10526	5.5241E-05	0.44053	0.00023119	524.7965208815108	64.779	1.0781	64.848	64.587	65.665	0.068916					66	41	3	0	0	0	0.16036	1	14649	14649		23.148	0	1	301520			11896	2890	7838	7898	16283	16283					0.05680161610621326
LQPCRYEIS	9	Unmodified	_LQPCRYEIS_					0	0	0			REV__ENST00000467774.1_1_1:40312772-40313274:-|nuORF	REV__ENST00000467774.1_1_1:40312772-40313274:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7755737304688	2	554.776416	1107.53828	0.40072	0.00022231	-2.0407	-0.0011321	-1.64	-0.00090983	554.7752314183027	38.688	0.60799	38.688	38.396	39.004	0					39	22	2	0	0	0	0.32614	1	6927	6927		3.2813	0.28607	1	56596	+		11897	12011	7839	7899	16284	16284					-0.011188047797986655
LQPFIYYRF	9	Unmodified	_LQPFIYYRF_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.33642578125	2	623.834591	1245.65463	0.0093184	5.8132E-06	-0.15714	-9.8032E-05	-0.14783	-9.2219E-05	623.834446659453	72.849	0.54747	72.901	72.718	73.266	0.052567					43	18	3	0	0	0	0.091044	1	17128	17128		34.402	23.578	1	597620			11898	1627	7840	7900	16285	16285					0.041628817823720965
LQPHTQYQF	9	Unmodified	_LQPHTQYQF_					0	0	0		ENST00000496645.5_1_1:159899888-159901393:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;ENST00000476102.1_1_1:159898784-159904055:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159899888-159901393:-|nuORF	ENST00000496645.5_1_1:159899888-159901393:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2880859375	2	581.288005	1160.56146	0.25471	0.00014806	0.35954	0.000209	0.61425	0.00035706	581.2879653668028	45.266	0.58097	45.354	45.148	45.729	0.08754					41	21	4	0	0	0	0.31086	1	8801	8801		5.2969	0	1	215450			11899	960	7841	7901	16286	16286					-0.012400426708154555
LQPQILIQQQ	10	Unmodified	_LQPQILIQQQ_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5716552734375	3	403.571434	1207.69247	0.10578	4.2691E-05	0.72311	0.00029182	0.82889	0.00033452	403.5717361674616	39.905	0.81333	39.905	39.692	40.505	0					35	28	2	0	0	0	0.46608	1	7255	7255		1.7423	0.78	1	43221	+		11900	10676	7842	7902	16287	16287					0.09693347977236044
LQQCEHCRL	9	Unmodified	_LQQCEHCRL_					0	0	0			REV__ENST00000379825.6_2_9:32973498-32973681:-|nuORF	REV__ENST00000379825.6_2_9:32973498-32973681:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7669677734375	2	565.265693	1128.51683	0.19714	0.00011144	0.56235	0.00031788	0.75949	0.00042932	565.7677578770381	56.1	2.442	56.166	55.759	58.201	0.066452					164	92	2	0	0	0	0.27929	1	11939	11939		9.3831	4.1525	1	29264000	+		11901	9265	7843	7903	16288	16288					-0.0422851308017016
LQQEPNSFFD	10	Unmodified	_LQQEPNSFFD_					0	0	0		ENST00000480195.1_1_X:24190859-24190928:+|nuORF;ZFX|p.H140Tfs*4|1|0.03|ENSG00000005889|chrX:24179540-24179541|-/A|frameshift_variant;ZFX|p.H140Qfs*7|1|0.03|ENSG00000005889|chrX:24179542-24179543|-/AACGTCCTCA|frameshift_variant;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX	ENST00000480195.1_1_X:24190859-24190928:+|nuORF	ENST00000480195.1_1_X:24190859-24190928:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.78125	2	612.78021	1223.54587	0.51732	0.000317	1.3564	0.00083115	1.8737	0.0011482	612.7811520002829	66.034	0.80126	66.034	65.853	66.654	0					53	29	3	0	0	0	0.38104	1	15230	15230		13.906	3.8321	1	634190			11902	361	7844	7904	16289	16289					-0.05696373978526026
LQQEPTLPS	9	Unmodified	_LQQEPTLPS_					0	0	0		ENST00000467588.1_1_1:117575773-117576720:+|nuORF	ENST00000467588.1_1_1:117575773-117576720:+|nuORF	ENST00000467588.1_1_1:117575773-117576720:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.78948974609375	2	506.769114	1011.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.364	1	83.386	82.886	83.886	0.021744								0	0	0	0.22786	1	20326	20326		13.906	0.86358	1				11903	6647	7845	7905	16290	16290					0.01837446343722604
LQQHHDQP	8	Unmodified	_LQQHHDQP_					0	0	0			REV__ENSG00000126016|ENST00000371959|AMOT	REV__ENSG00000126016|ENST00000371959|AMOT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.292724609375	2	501.741222	1001.46789	0.2966	0.00014882	1.4517	0.0007284	1.7483	0.00087722	501.74192432635704	56.146	0.4769	56.146	56.007	56.484	0					24	17	2	0	0	0	0.35492	1	12150	12150		11.64	0	1	138360	+		11904	8984	7846	7906	16291	16291					-0.032783420532496166
LQQQLLCR	8	Unmodified	_LQQQLLCR_					0	0	0		ENST00000566581.5_1_15:34656349-34659376:-|nuORF	ENST00000566581.5_1_15:34656349-34659376:-|nuORF	ENST00000566581.5_1_15:34656349-34659376:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.292724609375	2	501.281669	1000.54878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.864	1	55.864	55.364	56.364	0								0	0	0	0.14923	1	12100	12100		67.344	0	1				11905	7181	7847	7907	16292	16292					0.04853222665303747
LQQRQFWQI	9	Unmodified	_LQQRQFWQI_					0	0	0			REV__ENSG00000143344|ENST00000360851|RGL1	REV__ENSG00000143344|ENST00000360851|RGL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.24383544921875	3	416.22789	1245.66184	0.10141	4.2211E-05	-0.48833	-0.00020326	-0.38692	-0.00016105	416.22775936792146	46.833	0.57222	46.916	46.725	47.297	0.083096					39	22	3	0	0	0	0.25822	1	9306	9306		2.7352	0	1	78413	+		11906	9458	7848	7908	16293	16293					0.04883614382856649
LQQSPRQT	8	Unmodified	_LQQSPRQT_					0	0	0			REV__ENSG00000112494|ENST00000230256|UNC93A	REV__ENSG00000112494|ENST00000230256|UNC93A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2666931152344	2	479.259248	956.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.274	1	34.35	33.85	34.85	0.076244								0	0	0	0.38822	1	5448	5448		3.9444	1.0552	1		+		11907	8715	7849	7909	16294	16294					0.023951151236246915
LQRGKYLD	8	Unmodified	_LQRGKYLD_					0	0	0			REV__ENSG00000112562|ENST00000356284|SMOC2	REV__ENSG00000112562|ENST00000356284|SMOC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.25360107421875	2	496.779816	991.545079	-0.082991	-4.1228E-05	3.2939	0.0016363	3.2109	0.0015951	496.78141715769345	43.144	0.32186	43.144	42.974	43.296	0					18	10	2	0	0	0	0.3576	1	8191	8191		8.5933	0	1	27236	+		11908	8718	7850	7910	16295	16295					0.04896876163070374
LQRKAPRNPA	10	Unmodified	_LQRKAPRNPA_					0	0	0		nc|ENSG00000170011|Q8NFW9-5|MYRIP;nc|ENSG00000170011|Q8NFW9-4|MYRIP;nc|ENSG00000170011|Q8NFW9-3|MYRIP;nc|ENSG00000170011|Q8NFW9-6|MYRIP;nc|ENSG00000170011|Q8NFW9-2|MYRIP;ENSG00000170011|ENST00000302541|MYRIP	nc|ENSG00000170011|Q8NFW9-5|MYRIP	nc|ENSG00000170011|Q8NFW9-5|MYRIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8428955078125	2	575.843813	1149.67307	0.35373	0.00020369	-1.1525	-0.00066366	-0.79878	-0.00045997	575.842903122291	88.66	0.56772	88.692	88.49	89.058	0.032257					52	24	3	0	0	0	0.46746	1	22024	22024		1.4819	0.15237	1	217190			11909	4372	7851	7911	16296	16296					0.10422436476960684
LQRNESEPSEM	11	Unmodified	_LQRNESEPSEM_					0	0	0		ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.86767578125	3	440.53472	1318.58233	0.25084	0.0001105	-0.84017	-0.00037012	-0.58933	-0.00025962	440.53443165344805	62.805	0.35917	62.878	62.631	62.991	0.072701					16	12	3	0	0	0	0.31076	1	14016	14016		4.4062	0.81909	1	100470			11910	48	7852	7912	16297	16297					-0.0642186514412515
LQRRERRYLQR	11	Unmodified	_LQRRERRYLQR_					0	0	0		nc|ENSG00000179362|Q86SG4-3|HMGN2P46;nc|ENSG00000179362|Q86SG4-2|HMGN2P46;nc|ENSG00000179362|Q86SG4|HMGN2P46	nc|ENSG00000179362|Q86SG4-3|HMGN2P46	nc|ENSG00000179362|Q86SG4-3|HMGN2P46	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3095092773438	3	525.309718	1572.90732	0.38461	0.00020204	0.099778	5.2414E-05	0.48439	0.00025445	525.3095093462488	100.53	0.87159	100.53	99.887	100.76	0					149	48	4	0	0	0	0.4185	1	25703	25703		0.094841	0	1	204230			11911	7565	7853	7913	16298	16298					0.14378707565538207
LQRRNYQIL	9	Unmodified	_LQRRNYQIL_					0	0	0			REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF	REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3519287109375	2	602.351471	1202.68839	0.34365	0.000207	0.011109	6.6915E-06	0.35476	0.00021369	602.3513784445686	36.491	0.7258	36.491	36.312	37.038	0					53	27	3	0	0	0	0.34704	1	6331	6331		0.52476	0	1	117350	+		11912	10111	7854	7914	16299	16299					0.09515303274179132
LQSCMFRNLF	10	Unmodified	_LQSCMFRNLF_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.8081665039062	2	629.807193	1257.59983	0.67013	0.00042206	2.1095	0.0013285	2.7796	0.0017506	629.8086563458932	66.675	0.46291	66.74	66.579	67.042	0.065071					37	17	3	0	0	0	0.35104	1	15314	15314		17.113	4.0704	1	312340	+		11913	8491	7855	7915	16300	16300					-0.018661963521708458
LQSQLQQLQ	9	Unmodified	_LQSQLQQLQ_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3027954101562	2	543.301113	1084.58767	0.52027	0.00028267	2.0986	0.0011402	2.6189	0.0014228	543.302034749834	69.137	0.35146	69.137	68.888	69.239	0					17	12	2	0	0	0	0.27332	1	16108	16108		10.074	0	1	231150	+		11914	9004	7856	7916	16301	16301					0.048762265006644157
LQSRFHHQ	8	Unmodified	_LQSRFHHQ_					0	0	0		nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2750244140625	2	526.772857	1051.53116	0.3081	0.0001623	0.55236	0.00029097	0.86046	0.00045327	526.7730212975698	76.853	0.87717	76.892	76.356	77.233	0.03923					86	31	4	0	0	0	0.3576	1	18441	18441		4.756	0	1	938810			11915	7450	7857	7917	16302	16302					0.00745643454661149
LQSYMKLF	8	Unmodified	_LQSYMKLF_					0	0	0			REV__ENST00000508914.1_1_4:120473609-120484125:-|nuORF	REV__ENST00000508914.1_1_4:120473609-120484125:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.275634765625	2	515.275521	1028.53649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.226	1	78.256	77.756	78.756	0.030159								0	0	0	0.38822	1	18764	18764		4.756	0	1		+		11916	12243	7858	7918	16303	16303					0.023361862022284186
LQTALEKTR	9	Unmodified	_LQTALEKTR_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000485792.1_1_7:101754981-101758554:+|nuORF;ENST00000465461.6_1_7:101747665-101768865:+|nuORF;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1	nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|P39880-5|CUX1	nc|ENSG00000257923|P39880-5|CUX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7547607421875	2	530.31148	1058.60841	0.45137	0.00023937	-1.3937	-0.00073908	-0.94231	-0.00049972	530.3113998855267	88.403	0.67787	88.403	88.139	88.817	0					34	27	2	0	0	0	0.25699	1	21980	21980		3.5965	1.019	1	59251			11917	5704;7142	7859	7919	16304	16304					0.08144816880303551
LQTKWELL	8	Unmodified	_LQTKWELL_					0	0	0		ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794;CON__Q9R0H5;CON__Q6NXH9;CON__Q6IFZ6;CON__ENSEMBL:ENSBTAP00000038253;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000167768|ENST00000252244|KRT1;CON__P04264;CON__P35908	ENSG00000189182|ENST00000341809|KRT77	ENSG00000189182|ENST00000341809|KRT77	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7900390625	2	515.800217	1029.58588	0.50335	0.00025963	0.44658	0.00023035	0.94994	0.00048998	515.8003034683944	62.908	1.5919	62.908	62.227	63.819	0					155	58	3	0	0	0	0.53817	1	14455	14455		2.5775	0.27475	1	1436200		+	11918	238	7860	7920	16305	16305					0.07227217482704873
LQVGLQLRNKN	11	Unmodified	_LQVGLQLRNKN_					0	0	0			REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8826904296875	2	641.883136	1281.75172	0.14373	9.2256E-05	-0.70836	-0.00045469	-0.56463	-0.00036243	641.882615802387	90.07	0.71183	90.07	89.811	90.523	0					38	28	2	0	0	0	0.40578	1	22558	22558		2.9952	0	1	1073300	+		11919	10262	7861	7921	16306	16306					0.12211243991396259
LQVKMYFRRI	10	Unmodified	_LQVKMYFRRI_					0	0	0		ENSG00000184995|ENST00000448696|IFNE	ENSG00000184995|ENST00000448696|IFNE	ENSG00000184995|ENST00000448696|IFNE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.93280029296875	3	451.932309	1352.7751	0.52412	0.00023687	0.39452	0.00017829	0.91864	0.00041516	451.9323711189816	94.151	2.1279	94.151	93.339	95.467	0					292	94	4	0	0	0	0.46521	1	23761	23761		1.9064	0	1	1370700			11920	5002	7862	7922	16307	16307					0.112819665043844
LQWTADLFL	9	Unmodified	_LQWTADLFL_					0	0	0			REV__ENST00000568547.5_1_15:31233444-31253097:-|nuORF	REV__ENST00000568547.5_1_15:31233444-31253097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7970581054688	2	553.797675	1105.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.476	1	95.514	95.014	96.014	0.038872								0	0	0	0.28527	1	24012	24012		2.0598	0	1		+		11921	10100	7863	7923	16308	16308					0.03222913620084
LQYKGQAGAL	10	Unmodified	_LQYKGQAGAL_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7926635742188	2	524.792924	1047.57129	-0.23071	-0.00012108	0.0029161	1.5303E-06	-0.22779	-0.00011954	524.7928128852546	45.039	0.4398	45.039	44.831	45.271	0					36	15	3	0	0	0	0.38104	1	8856	8856		13.906	0.86358	1	285870			11922	3150	7864	7924	16309	16309					0.049411453345555856
LRALKSRRQ	9	Unmodified	_LRALKSRRQ_					0	0	0		nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-5|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3588256835938	2	564.359631	1126.70471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.673	1	62.746	62.246	63.246	0.072701								0	0	0	0.28724	1	14033	14033		1.6526	0	1				11923	906	7865	7925	16310	16310					0.14642429230934795
LRAYPFSLF	9	Unmodified	_LRAYPFSLF_					0	0	0			REV__ENSG00000112293|ENST00000230036|GPLD1	REV__ENSG00000112293|ENST00000230036|GPLD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7782592773438	2	557.30821	1112.60187	0.80286	0.00044744	4.415	0.0024605	5.2179	0.002908	557.3110049002308	84.855	0.40006	84.878	84.691	85.091	0.023132					21	17	2	0	0	0	0.24635	1	20752	20752		10.824	2.9138	1	130660	+		11924	8711	7866	7926	16311	16311					0.05006923719588485
LRCMLPVI	8	Unmodified	_LRCMLPVI_					0	0	0		ENST00000379391.7_2_12:57452318-57452450:-|nuORF	ENST00000379391.7_2_12:57452318-57452450:-|nuORF	ENST00000379391.7_2_12:57452318-57452450:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.77423095703125	2	472.774634	943.534715	-0.046762	-2.2108E-05	-0.91001	-0.00043023	-0.95677	-0.00045234	472.7740597715182	36.669	0.64276	36.75	36.516	37.159	0.081711					57	25	3	0	0	0	0.53858	1	6273	6273		2.3027	0	1	266420			11925	6276	7867	7927	16312	16312					0.060688539126317664
LRDREAELQQ	10	Unmodified	_LRDREAELQQ_					0	0	0		ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.33056640625	2	629.330933	1256.64731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.394	1	31.394	30.894	31.894	0								0	0	0	0.33965	1	4711	4711		0.35063	0	1				11926	1567	7868	7928	16313	16313					0.029254974440618753
LRDWRRNY	8	Unmodified	_LRDWRRNY_					0	0	0		ENST00000526142.5_1_11:419653-429752:-|nuORF;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9;ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000526142.5_1_11:419653-429752:-|nuORF	ENST00000526142.5_1_11:419653-429752:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2675170898438	2	589.812513	1177.61047	0.11251	6.6361E-05	-0.83291	-0.00049126	-0.7204	-0.0004249	589.8119613807814	31.731	0.22075	31.804	31.733	31.954	0.073782					14	9	2	0	0	0	0.3576	1	4704	4704		0.6015	0	1	19306			11927	6988	7869	7929	16314	16314					0.02877290408787303
LREKFEHIQ	9	Unmodified	_LREKFEHIQ_					0	0	0		ENSG00000154760|ENST00000285013|SLFN13;nc|ENSG00000154760|Q68D06-2|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3301391601562	2	600.330205	1198.64586	-0.021088	-1.266E-05	0.19485	0.00011697	0.17376	0.00010431	600.3303091675328	43.147	1.181	43.237	42.98	44.161	0.089764					117	42	5	0	0	0	0.18398	1	8219	8219		20.415	2.0414	1	1690800			11928	3565	7870	7930	16315	16315					0.054479081459248846
LREQNRRKF	9	Unmodified	_LREQNRRKF_					0	0	0			REV__ENSG00000115170|ENST00000434821|ACVR1	REV__ENSG00000115170|ENST00000434821|ACVR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.220458984375	3	416.242422	1245.70544	0.37296	0.00015524	1.6144	0.00067199	1.9874	0.00082723	416.2429802156415	49.133	0.67445	49.133	48.888	49.562	0					35	23	2	0	0	0	0.25594	1	10006	10006		4.897	0.18109	1	81801	+		11929	8774	7871	7931	16316	16316					0.0924122387996249
LRFHCGSGSPV	11	Unmodified	_LRFHCGSGSPV_					0	0	0			REV__ENST00000299163.6_1_10:102308182-102308395:+|nuORF	REV__ENST00000299163.6_1_10:102308182-102308395:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7498779296875	2	580.287482	1158.56041	0.58512	0.00033954	-0.98167	-0.00056965	-0.39655	-0.00023011	580.2867076122003	77.321	0.35745	77.356	77.263	77.62	0.034485					24	16	2	0	0	0	0.30659	1	18551	18551		17.113	3.2068	1	409390	+		11930	11339	7872	7932	16317	16317					-0.012525803113476286
LRFHNTSL	8	Unmodified	_LRFHNTSL_					0	0	0			REV__nc|ENSG00000125207|Q96J94-3|PIWIL1	REV__nc|ENSG00000125207|Q96J94-3|PIWIL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2715148925781	2	494.272158	986.529764	0.47214	0.00023337	-0.45327	-0.00022404	0.018873	9.3282E-06	494.271916748243	61.332	0.33243	61.332	61.086	61.418	0					18	11	2	0	0	0	0.35759	1	13772	13772		13.906	0	1	86580	+		11931	8967	7873	7933	16318	16318					0.03596009365901409
LRFLMLWK	8	Unmodified	_LRFLMLWK_					0	0	0			REV__ENST00000538204.5_1_X:131512512-131512599:-|nuORF	REV__ENST00000538204.5_1_X:131512512-131512599:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2530517578125	2	553.830798	1105.64704	0.43706	0.00024206	-0.98781	-0.00054708	-0.55075	-0.00030502	553.830101724121	87.546	0.53964	87.576	87.311	87.851	0.030037					42	20	3	0	0	0	0.3576	1	21678	21678		2.5775	0	1	313470	+		11932	12393	7874	7934	16319	16319					0.09844450981131558
LRFPPRHNLP	10	Unmodified	_LRFPPRHNLP_					0	0	0			REV__ENST00000333646.10_2_X:70338483-70339224:+|nuORF	REV__ENST00000333646.10_2_X:70338483-70339224:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.22027587890625	3	416.243763	1245.70946	0.36074	0.00015016	-0.87856	-0.00036569	-0.51782	-0.00021554	416.2432186840798	50.958	0.44579	50.958	50.707	51.152	0					31	14	3	0	0	0	0.3181	1	10630	10630		3.5871	0	1	38197	+		11933	11429	7875	7935	16320	16320					0.09643313373703677
LRFWKHWH	8	Unmodified	_LRFWKHWH_					0	0	0		nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;chr1:24319941-24331426|475|14.47|0.52|4.79|+|ENST00000524724|GRHL3,GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8253173828125	2	605.32506	1208.63557	0.58667	0.00035513	-1.9793	-0.0011981	-1.3927	-0.00084302	605.3240777192192	37.989	0.44973	37.989	37.758	38.207	0					20	15	2	0	0	0	0.54097	1	6698	6698		0.69038	0.16561	1	21308			11934	137	7876	7936	16321	16321					0.03959390002000873
LRGGKPEPIP	10	Unmodified	_LRGGKPEPIP_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8052978515625	2	532.316566	1062.61858	0.64889	0.00034541	0.47929	0.00025513	1.1282	0.00060055	532.3168937335731	99.186	0.50117	99.229	99.141	99.643	0.042831					45	32	2	0	0	0	0.29771	1	25167	25167		22.736	0	1	598320	+		11935	8707	7877	7937	16322	16322					0.0897742460556401
LRGGRERGVAE	11	Unmodified	_LRGGRERGVAE_					0	0	0		ENST00000459946.5_2_7:128432196-128432401:+|nuORF	ENST00000459946.5_2_7:128432196-128432401:+|nuORF	ENST00000459946.5_2_7:128432196-128432401:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3335571289062	2	600.33381	1198.65307	0.47691	0.00028631	0.37378	0.0002244	0.8507	0.0005107	600.333882791866	88.093	1.9448	88.093	87.402	89.347	0					202	75	3	0	0	0	0.39569	1	22010	22010		5.2969	0.39987	1	484250			11936	6598	7878	7938	16323	16323					0.061686407463639625
LRHFCWPRY	9	Unmodified	_LRHFCWPRY_					0	0	0		ENST00000492495.1_1_5:149225260-149227118:+|nuORF;nc|ENSG00000155846|Q86YN6-6|PPARGC1B;nc|ENSG00000155846|Q86YN6-5|PPARGC1B;nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B	ENST00000492495.1_1_5:149225260-149227118:+|nuORF	ENST00000492495.1_1_5:149225260-149227118:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.3222045898438	2	639.32166	1276.62877	-0.4475	-0.0002861	0.9536	0.00060966	0.50609	0.00032356	639.8234549460159	42.625	0.1617	42.625	42.575	42.736	0					6	5	2	0	0	0	0.34704	1	8106	8106		0.52476	0	1	22807			11937	3596	7879	7939	16324	16324					0.001517090591505621
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.6083068847656	3	457.607825	1369.80165	0.41154	0.00018832	0.51966	0.0002378	0.9312	0.00042613	457.6079924139184	92.397	1.3582	92.434	91.911	93.27	0.03653					113	51	3	0	0	0	0.4167	1	23135	23135		0.50596	0.50596	1	222900			11938	810	7880	7940	16325	16325					0.1315365539569484
LRHRYRPK	8	Unmodified	_LRHRYRPK_					0	0	0			REV__nc|ENSG00000085224|P46100-6|ATRX	REV__nc|ENSG00000085224|P46100-6|ATRX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3395385742188	2	563.341241	1124.66793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.71	1	114.72	114.22	115.22	0.013336								0	0	0	0.38822	1	29177	29177		0.69038	0	1		+		11939	7731	7881	7941	16326	16326					0.11058177405016067
LRIYEPNF	8	Unmodified	_LRIYEPNF_					0	0	0			REV__ENST00000471762.1_1_1:66085660-66088754:+|nuORF	REV__ENST00000471762.1_1_1:66085660-66088754:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2823486328125	2	526.282192	1050.54983	0.34823	0.00018327	-0.15804	-8.3174E-05	0.19019	0.00010009	526.2820179033812	64.779	0.64884	64.848	64.608	65.257	0.068916					43	24	2	0	0	0	0.33167	1	14668	14668		34.402	6.7729	1	351700	+		11940	12032	7882	7942	16327	16327					0.026577603058285604
LRKGFAAF	8	Unmodified	_LRKGFAAF_					0	0	0			REV__ENST00000569745.5_1_15:43477607-43487036:+|nuORF	REV__ENST00000569745.5_1_15:43477607-43487036:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.5575866699219	2	455.268887	908.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.687	1	35.766	35.266	36.266	0.078827								0	0	0	0.38822	1	5873	5873		0.79363	0	1		+		11941	12490	7883	7943	16328	16328					0.06530116205169634
LRKLARNPKD	10	Unmodified	_LRKLARNPKD_					0	0	0			REV__ENSG00000135824|ENST00000515211|RGS8	REV__ENSG00000135824|ENST00000515211|RGS8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.872314453125	2	605.872571	1209.73059	0.72164	0.00043722	-1.1598	-0.00070266	-0.43812	-0.00026544	605.8718538020954	94.117	0.65237	94.117	93.914	94.566	0					65	34	3	0	0	0	0.47345	1	23858	23858		0.35063	0	1	359110	+		11942	9219	7884	7944	16329	16329					0.13411278682542616
LRKSMIVPYRL	11	Unmodified	_LRKSMIVPYRL_					0	0	0			REV__ENSG00000181693|ENST00000641600|OR8H1	REV__ENSG00000181693|ENST00000641600|OR8H1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2798156738281	3	459.279597	1374.81696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.841	1	95.841	95.341	96.341	0								0	0	0	0.34185	1	24280	24280		0.094841	0	1		+		11943	10537	7885	7945	16330	16330					0.14454522192886543
LRKVLAKGK	9	Unmodified	_LRKVLAKGK_					0	0	0		OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8529968261719	2	506.853119	1011.69168	-0.12201	-6.184E-05	-0.13344	-6.7634E-05	-0.25545	-0.00012947	506.85295430011547	112.14	1.2356	112.14	111.92	113.16	0					352	141	4	0	0	0	0.34704	1	28959	28959		0.52476	0	1	8677500			11944	7655	7886	7946	16331	16331					0.18630598118829766
LRKVLAKGK	9	Unmodified	_LRKVLAKGK_					0	0	0		OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8522644042969	2	506.853119	1011.69168	0.22803	0.00011558	-0.35413	-0.00017949	-0.1261	-6.3915E-05	506.85281935187265	112.12	0.95386	112.14	111.94	112.89	0.014595					287	110	4	0	0	0	0.34704	2	28555	28555;28738		0.52476	0	1	5817000			11945	7655	7886	7946	16332;16333	16332					0.18630598118829766
LRKVLAKGK	9	Unmodified	_LRKVLAKGK_					0	0	0		OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.853271484375	2	506.853119	1011.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.02	1	113.03	112.53	113.53	0.013817								0	0	0	0.2927	1	28849	28849		0.52476	0	1				11946	7655	7886	7946	16334	16334					0.18630598118829766
LRLIFITLEM	10	Unmodified	_LRLIFITLEM_					0	0	0			REV__ENSG00000185432|ENST00000332160|METTL7A	REV__ENSG00000185432|ENST00000332160|METTL7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8751831054688	2	624.872859	1247.73117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.62	1	104.66	104.16	105.16	0.034004								0	0	0	0.33892	1	26752	26752		1.4819	0.95714	1		+		11947	10670	7887	7947	16335	16335					0.11720937287350353
LRLVRLVGLIK	11	Unmodified	_LRLVRLVGLIK_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-2|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.302734375	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.761	1	61.761	61.261	62.261	0								0	0	0	0.34185	1	13896	13896		0.094841	0.094841	1		+		11948	10822;8385	7888	7948	16336	16336					0.25807349203978447
LRMWKLQSF	9	Unmodified	_LRMWKLQSF_					0	0	0		ENST00000474018.1_1_6:170089229-170089316:-|nuORF	ENST00000474018.1_1_6:170089229-170089316:-|nuORF	ENST00000474018.1_1_6:170089229-170089316:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8320922851562	2	604.834069	1207.65358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.392	1	39.392	38.892	39.892	0								0	0	0	0.2927	1	7109	7109		0.52476	0	1				11949	6694	7889	7949	16337	16337					0.05806344141842601
LRNSCRTRKI	10	Unmodified	_LRNSCRTRKI_					0	0	0			REV__ENST00000523483.5_2_8:59490700-59490754:+|nuORF	REV__ENST00000523483.5_2_8:59490700-59490754:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2433776855469	3	416.243546	1245.70881	0.045195	1.8812E-05	-0.036189	-1.5064E-05	0.0090053	3.7484E-06	416.2434978257379	43.888	3.4855	43.888	43.03	46.516	0					378	123	4	0	0	0	0.45632	1	9209	9209		3.5871	3.5871	1	1082500	+		11950	12308	7890	7950	16338	16338					0.09578150662332519
LRQFRYTF	8	Unmodified	_LRQFRYTF_					0	0	0		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.800048828125	2	565.808908	1129.60326	0.57649	0.00032619	-1.1152	-0.00063099	-0.53871	-0.00030481	565.8082156704318	82.171	0.96142	82.171	81.69	82.651	0					71	33	3	0	0	0	0.50159	3	20141	20141;20167;20243		12.532	2.4576	1	125640			11951	3144	7891	7951	16339;16340;16341	16339					0.04364557808344216
LRQKYLERI	9	Unmodified	_LRQKYLERI_					0	0	0			REV__ENSG00000008226|ENST00000308059|DLEC1	REV__ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.9154357910156	3	406.915423	1217.72444	0.039014	1.5875E-05	0.02811	1.1438E-05	0.067124	2.7314E-05	406.9154361196014	36.524	2.1942	36.606	36.235	38.43	0.081715					195	83	4	0	0	0	0.2828	1	6175	6175		8.9762	0	1	762900	+		11952	7959	7892	7952	16342	16342					0.1242876045103003
LRQVGEGCNFL	11	Unmodified	_LRQVGEGCNFL_					0	0	0			REV__ENST00000609345.1_1_17:12920217-12920930:-|nuORF	REV__ENST00000609345.1_1_17:12920217-12920930:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3141479492188	2	618.313697	1234.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.533	1	66.533	66.033	67.033	0								0	0	0	0.32823	1	15353	15353		4.897	1.3005	1		+		11953	7910	7893	7953	16343	16343					0.00491958031602735
LRQYRPREY	9	Unmodified	_LRQYRPREY_					0	0	0		nc|ENSG00000145217|Q9H2B4-2|SLC26A1;ENSG00000145217|ENST00000398516|SLC26A1	nc|ENSG00000145217|Q9H2B4-2|SLC26A1	nc|ENSG00000145217|Q9H2B4-2|SLC26A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.7813720703125	2	640.846553	1279.67855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.783	1	60.856	60.356	61.356	0.073421								0	0	0	0.28631	1	13459	13459		1.8442	0	1				11954	3239	7894	7954	16344	16344					0.04990115268788031
LRRKWRRWHLQ	11	Unmodified	_LRRKWRRWHLQ_					0	0	0		ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1;nc|ENSG00000114812|P32241-2|VIPR1	ENST00000498102.1_1_3:42576287-42577770:+|nuORF	ENST00000498102.1_1_3:42576287-42577770:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.6597900390625	3	545.658681	1633.95422	0.42561	0.00023224	3.0547	0.0016668	3.4803	0.0018991	545.6600591069213	102.26	0.26091	102.3	102.21	102.47	0.040916					24	18	2	0	0	0	0.41892	1	26060	26060		0	0	1	65308			11955	1858	7895	7955	16345	16345					0.16259611907344151
LRRSFSRCMF	10	Unmodified	_LRRSFSRCMF_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8818359375	3	434.890115	1301.64852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.429	1	41.429	40.929	41.929	0								0	0	0	0.33952	1	7723	7723		0.77653	0	1		+		11956	9309	7896	7956	16346	16346					0.009757170075999966
LRRYVRPFFLL	11	Unmodified	_LRRYVRPFFLL_					0	0	0			REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.3036804199219	3	493.969751	1478.88742	0.6105	0.00030157	-1.2337	-0.00060942	-0.62321	-0.00030785	493.9690286915598	55.431	0.79242	55.431	55.215	56.007	0					79	27	5	0	0	0	0.40087	2	11963	11963;12022		4.1166	1.4854	1	436110	+		11957	11860	7897	7957	16347;16348	16347					0.167135635728755
LRRYVRPFFLL	11	Unmodified	_LRRYVRPFFLL_					0	0	0			REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	493.969751	1478.88742	0.6105	0.00030157	-1.2337	-0.00060942	-0.62321	-0.00030785	493.9690286915598	55.431	0.79242	55.431	55.215	56.007	0	0.0023453	-3.2618E-05	NaN	4.1166	79	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436110	+		11958	11860	7897	7957							0.167135635728755
LRRYVRPFFLL	11	Unmodified	_LRRYVRPFFLL_					0	0	0			REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	493.969751	1478.88742	0.5263	0.00025998	-1.2011	-0.0005933	-0.67479	-0.00033333	493.9691759009182	55.361	0.69191	55.426	55.123	55.815	0.065128	-0.0023453	1.5722E-05	NaN	4.1166	60	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479850	+		11959	11860	7897	7957							0.167135635728755
LRSIQMEQR	9	Unmodified	_LRSIQMEQR_					0	0	0			REV__ENST00000600534.1_1_19:59085324-59085477:+|nuORF	REV__ENST00000600534.1_1_19:59085324-59085477:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.814208984375	2	580.813864	1159.61318	0.30542	0.00017739	0.41612	0.00024169	0.72154	0.00041908	580.8139793672302	50.073	0.66411	50.073	49.85	50.514	0					70	23	4	0	0	0	0.2546	1	10405	10405		12.241	2.8575	1	469590	+		11960	12622	7898	7958	16349	16349					0.03975377751430642
LRSRRAPSF	9	Unmodified	_LRSRRAPSF_					0	0	0		nc|ENSG00000101892|Q9UN42-2|ATP1B4;ENSG00000101892|ENST00000218008|ATP1B4	nc|ENSG00000101892|Q9UN42-2|ATP1B4	nc|ENSG00000101892|Q9UN42-2|ATP1B4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.31689453125	2	545.317432	1088.62031	0.4162	0.00022696	-1.0145	-0.00055323	-0.59831	-0.00032627	545.3167214442848	87.63	0.82199	87.63	87.291	88.113	0					82	29	4	0	0	0	0.31496	1	21850	21850		4.756	0	1	527030			11961	1277	7899	7959	16350	16350					0.07954478414171717
LRSWCYKGF	9	Unmodified	_LRSWCYKGF_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2891235351562	2	580.289494	1158.56443	0.55667	0.00032303	-0.75098	-0.00043578	-0.19431	-0.00011276	580.2888830715759	96.91	0.68282	96.91	96.552	97.235	0					85	33	3	0	0	0	0.22344	1	24613	24613		15.847	1.9411	1	766810			11962	2754	7900	7960	16351	16351					-0.008504908176519166
LRTTTPAF	8	Unmodified	_LRTTTPAF_					0	0	0		TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant;ENSG00000120440|ENST00000239587|TTLL2	TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant	TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.75555419921875	2	453.75581	905.497067	0.3017	0.0001369	-0.32923	-0.00014939	-0.027522	-1.2488E-05	453.7556101074755	48.686	0.65984	48.686	48.483	49.143	0					37	22	2	0	0	0	0.52924	1	9960	9960		8.5933	1.8701	1	96751			11963	2121	7901	7961	16352	16352					0.040538022430382625
LRTTTPAF	8	Unmodified	_LRTTTPAF_					0	0	0		TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant;ENSG00000120440|ENST00000239587|TTLL2	TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant	TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	453.75581	905.497067	0.069089	3.135E-05	0.27945	0.0001268	0.34854	0.00015815	453.75571964304976	48.694	0.58735	48.77	48.468	49.056	0.076607	0.042064	0.00027825	NaN	8.5933	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79822			11964	2121	7901	7961							0.040538022430382625
LRVKKCVW	8	Unmodified	_LRVKKCVW_					0	0	0			REV__ENST00000538029.1_1_12:9102760-9162130:+|nuORF	REV__ENST00000538029.1_1_12:9102760-9162130:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8135375976562	2	516.312772	1030.61099	0.62729	0.00032388	0.67275	0.00034735	1.3	0.00067122	516.3127745134736	98.207	0.4054	98.207	97.995	98.4	0					26	21	2	0	0	0	0.3576	1	24998	24998		0.69038	0	1	73982	+		11965	9337	7902	7962	16353	16353					0.09690993804292702
LRVLDRTE	8	Unmodified	_LRVLDRTE_					0	0	0			REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2906494140625	2	501.290548	1000.56654	0.30809	0.00015444	0.07228	3.6233E-05	0.38037	0.00019067	501.2904433310158	78.764	2.4673	78.764	77.555	80.022	0					159	85	3	0	0	0	0.53557	1	19082	19082		4.3292	0	1	917630	+		11966	10162	7903	7963	16354	16354					0.06628261191804086
LRWWFFVF	8	Unmodified	_LRWWFFVF_					0	0	0			REV__SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|39|3|sense	REV__SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|39|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8214721679688	2	600.821287	1199.62802	-0.042568	-2.5576E-05	-0.036507	-2.1934E-05	-0.079075	-4.751E-05	600.8213015636156	27.11	0.22906	27.197	27.094	27.323	0.0867					29	17	2	0	0	0	0.54097	1	3319	3319		0.69038	0	1	21175	+		11967	13015	7904	7964	16355	16355					0.03619237681732557
LRYFAALKCRL	11	Unmodified	_LRYFAALKCRL_					0	0	0			REV__ENST00000508684.5_1_4:2877642-2900342:+|nuORF	REV__ENST00000508684.5_1_4:2877642-2900342:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.9325866699219	3	451.932309	1352.7751	0.18566	8.3907E-05	0.59119	0.00026718	0.77685	0.00035109	451.93252740718833	91.653	0.65634	91.688	91.334	91.991	0.035446					60	23	3	0	0	0	0.41713	1	22774	22774		0.40827	0	1	255220	+		11968	8281	7905	7965	16356	16356					0.112819665043844
LRYNFHPSL	9	Unmodified	_LRYNFHPSL_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8056030273438	2	573.806365	1145.59818	0.30347	0.00017414	-1.3564	-0.00077829	-1.0529	-0.00060415	573.8054410785999	101.71	0.43034	101.71	101.53	101.96	0					73	32	3	0	0	0	0.30397	1	26050	26050		6.2058	0.47393	1	266990			11969	4061	7906	7966	16357	16357					0.031202539457581224
LRYNFHPSL	9	Unmodified	_LRYNFHPSL_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8041381835938	2	573.806365	1145.59818	0.43181	0.00024778	-1.6684	-0.00095737	-1.2366	-0.00070959	573.8052550893017	101.71	0.34635	101.75	101.61	101.95	0.042656					42	30	2	0	0	0	0.27332	1	25883	25883		10.074	1.9184	1	329960			11970	4061	7906	7966	16358	16358					0.031202539457581224
LSAGKNISLL	10	Unmodified	_LSAGKNISLL_					0	0	0		ENST00000357681.9_1_1:203709714-203709879:+|nuORF	ENST00000357681.9_1_1:203709714-203709879:+|nuORF	ENST00000357681.9_1_1:203709714-203709879:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.31097412109375	2	508.310949	1014.60735	0.43777	0.00022252	-0.36144	-0.00018372	0.076334	3.8801E-05	508.3107345002152	60.125	0.54441	60.125	59.989	60.533	0					33	19	2	0	0	0	0.27365	1	13392	13392		33.445	4.3633	1	159010			11971	6135	7907	7967	16359	16359					0.1006260251143658
LSALDLVMKDR	11	Unmodified	_LSALDLVMKDR_					0	0	0		nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	nc|ENSG00000005700|Q9P2D0-2|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.9033203125	3	420.904196	1259.69076	-0.18839	-7.9292E-05	-0.95741	-0.00040298	-1.1458	-0.00048227	420.9033958729073	43.491	2.0502	43.58	42.887	44.937	0.088924					234	74	5	0	0	0	0.39158	1	8151	8151		6.2344	0.45093	1	765680			11972	354	7908	7968	16360	16360					0.07129970896971827
LSAPPNLWIVT	11	Unmodified	_LSAPPNLWIVT_					0	0	0			REV__nc|ENSG00000156299|Q13009-2|TIAM1	REV__nc|ENSG00000156299|Q13009-2|TIAM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.24615478515625	3	404.23253	1209.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.987	1	96.987	96.487	97.487	0								0	0	0	0.33867	1	24632	24632		1.2148	0.51716	1		+		11973	9751	7909	7969	16361	16361					0.0793084709125651
LSAVDVNN	8	Unmodified	_LSAVDVNN_					0	0	0			REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF	REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22039794921875	2	416.213975	830.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.976	1	50.05	49.55	50.55	0.07312								0	0	0	0.38822	1	10173	10173		7.2892	2.96	1		+		11974	10439	7910	7970	16362	16362					-0.008593539246589899
LSAVDVNN	8	Unmodified	_LSAVDVNN_					0	0	0			REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF	REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2270202636719	2	416.213975	830.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.088	1	50.161	49.661	50.661	0.07312								0	0	0	0.38822	1	10207	10207		4.3292	1.7518	1		+		11975	10439	7910	7970	16363	16363					-0.008593539246589899
LSAWFLCWHL	10	Unmodified	_LSAWFLCWHL_					0	0	0			REV__RTP2|p.R200H|1|0.1|ENSG00000198471|chr3:187698577-187698577|C/T|missense_variant	REV__RTP2|p.R200H|1|0.1|ENSG00000198471|chr3:187698577-187698577|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.3193969726562	2	638.320794	1274.62703	-0.45709	-0.00029177	-0.5514	-0.00035197	-1.0085	-0.00064374	638.3204312942265	40.86	1.0265	40.86	40.623	41.65	0					109	37	5	0	0	0	0.45627	2	7718	7718;7773		3.5965	0.31518	1	1120700	+		11976	12979	7911	7971	16364;16365	16364					0.000706552505334912
LSCYLLSEPM	10	Unmodified	_LSCYLLSEPM_					0	0	0			REV__ENST00000466870.1_1_3:113784185-113787033:+|nuORF	REV__ENST00000466870.1_1_3:113784185-113787033:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2874755859375	2	578.27486	1154.53517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.899	1	83.899	83.399	84.399	0								0	0	0	0.28665	1	20650	20650		19.257	3.4888	1		+		11977	9649	7912	7972	16366	16366					-0.03591815948811927
LSDKIKEVT	9	Unmodified	_LSDKIKEVT_					0	0	0		ENST00000290573.6_1_2:75119227-75119419:+|nuORF	ENST00000290573.6_1_2:75119227-75119419:+|nuORF	ENST00000290573.6_1_2:75119227-75119419:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.8012084960938	2	516.800414	1031.58628	0.0047803	2.4705E-06	1.1217	0.00057967	1.1264	0.00058215	516.8012093636671	33.435	1.0709	33.435	33.223	34.294	0					69	39	3	0	0	0	0.30757	1	5317	5317		5.7319	0	1	97369			11978	5944	7913	7973	16367	16367					0.07174592411911362
LSDKIKEVT	9	Unmodified	_LSDKIKEVT_					0	0	0		ENST00000290573.6_1_2:75119227-75119419:+|nuORF	ENST00000290573.6_1_2:75119227-75119419:+|nuORF	ENST00000290573.6_1_2:75119227-75119419:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	516.800414	1031.58628	0.0047803	2.4705E-06	1.1217	0.00057967	1.1264	0.00058215	516.8012093636671	33.435	1.0709	33.435	33.223	34.294	0	0.010303	9.845E-06	NaN	5.7319	69	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97369			11979	5944	7913	7973							0.07174592411911362
LSDKIKEVT	9	Unmodified	_LSDKIKEVT_					0	0	0		ENST00000290573.6_1_2:75119227-75119419:+|nuORF	ENST00000290573.6_1_2:75119227-75119419:+|nuORF	ENST00000290573.6_1_2:75119227-75119419:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	516.800414	1031.58628	0.016245	8.3956E-06	1.0931	0.0005649	1.1093	0.0005733	516.8012128054494	33.34	0.67214	33.414	33.209	33.881	0.074322	-0.010303	-1.9703E-05	NaN	5.7319	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124940			11980	5944	7913	7973							0.07174592411911362
LSDLLHPYL	9	Unmodified	_LSDLLHPYL_					0	0	0			REV__ENST00000568495.5_1_16:67862172-67864127:-|nuORF	REV__ENST00000568495.5_1_16:67862172-67864127:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.3055419921875	2	535.797675	1069.5808	0.64067	0.00034327	-0.90042	-0.00048244	-0.25975	-0.00013917	535.7974813331567	62.95	0.14747	63.023	62.906	63.054	0.072701					6	5	2	0	0	0	0.2446	1	14117	14117		11.64	0.81637	1	67658	+		11981	12512	7914	7974	16368	16368					0.04878913620086678
LSDYEQEHLI	10	Unmodified	_LSDYEQEHLI_					0	0	0			REV__ENSG00000157483|ENST00000288235|MYO1E	REV__ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.8008422851562	2	623.801143	1245.58773	0.1038	6.4751E-05	-0.20574	-0.00012834	-0.10194	-6.3589E-05	623.8009267161789	86.649	0.45603	86.676	86.45	86.906	0.027573					67	20	4	0	0	0	0.44246	1	21341	21341		6.2058	0.47393	1	2114700	+		11982	9778	7915	7975	16369	16369					-0.02523818289978408
LSEMKFHM	8	Unmodified	_LSEMKFHM_					0	0	0			REV__ENST00000338222.6_1_X:56592195-56592459:+|nuORF	REV__ENST00000338222.6_1_X:56592195-56592459:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.74090576171875	2	511.743531	1021.47251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.018	1	21.018	20.518	21.518	0								0	0	0	0.38822	1	1748	1748		2.5775	0.51773	1		+		11983	11449	7916	7976	16370	16370					-0.037369172263424844
LSENEKFF	8	Unmodified	_LSENEKFF_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.25244140625	2	507.250557	1012.48656	0.15592	7.9089E-05	1.2834	0.00065099	1.4393	0.00073008	507.7527503874436	60.154	0.55934	60.226	60.044	60.604	0.07246					35	19	3	0	0	0	0.51887	1	13231	13231		10.183	0	1	90875	+		11984	8784	7917	7977	16371	16371					-0.019182252020414126
LSEQLWSGCL	10	Unmodified	_LSEQLWSGCL_					0	0	0			REV__ENST00000332349.4_1_11:96123211-96123704:+|nuORF	REV__ENST00000332349.4_1_11:96123211-96123704:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.27587890625	2	568.276249	1134.53795	0.19914	0.00011317	-1.1715	-0.00066576	-0.97239	-0.00055259	568.2754824026615	95.493	0.77271	95.532	95.264	96.036	0.038872					116	36	5	0	0	0	0.16124	1	24080	24080		38.176	2.0485	1	14334000	+		11985	11425	7918	7978	16372	16372					-0.02394224499653319
LSESKPQGQ	9	Unmodified	_LSESKPQGQ_					0	0	0		nc|ENSG00000236882|Q52M75|LINC01554	nc|ENSG00000236882|Q52M75|LINC01554	nc|ENSG00000236882|Q52M75|LINC01554	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2508850097656	2	487.251089	972.487624	-0.38694	-0.00018854	0.16485	8.0322E-05	-0.2221	-0.00010822	487.25113906611244	24.614	0.56351	24.614	24.408	24.971	0					75	41	3	0	0	0	0.23216	2	2718	2718;2754		14.838	0.93222	1	59254			11986	7611	7919	7979	16373;16374	16373					0.0002798916685833319
LSESKPQGQ	9	Unmodified	_LSESKPQGQ_					0	0	0		nc|ENSG00000236882|Q52M75|LINC01554	nc|ENSG00000236882|Q52M75|LINC01554	nc|ENSG00000236882|Q52M75|LINC01554	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.25103759765625	2	487.251089	972.487624	-0.19524	-9.513E-05	0.017491	8.5226E-06	-0.17775	-8.6607E-05	487.2510671377748	24.45	0.4204	24.546	24.356	24.776	0.096075					81	35	3	0	0	0	0.23216	2	2549	2549;2588		14.838	0.93222	1	53624			11987	7611	7919	7979	16375;16376	16375					0.0002798916685833319
LSEWHSVL	8	Unmodified	_LSEWHSVL_					0	0	0			REV__ENST00000249837.7_1_15:62306190-62315620:-|nuORF	REV__ENST00000249837.7_1_15:62306190-62315620:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.75347900390625	2	485.753267	969.491981	0.052835	2.5665E-05	0.44673	0.000217	0.49957	0.00024267	485.75342611949884	50.932	0.52586	51.002	50.523	51.049	0.069878					35	19	3	0	0	0	0.53858	1	10412	10412		2.3027	0	1	157010	+		11988	11208	7920	7980	16377	16377					0.006014983804220719
LSFELCSEI	9	Unmodified	_LSFELCSEI_					0	0	0			REV__ENST00000503693.1_1_4:1283701-1322488:+|nuORF	REV__ENST00000503693.1_1_4:1283701-1322488:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.7523803710938	2	520.752075	1039.4896	0.45649	0.00023772	0.053559	2.7891E-05	0.51004	0.00026561	520.7520619649117	65.509	0.70882	65.575	65.316	66.025	0.066872					42	27	2	0	0	0	0.23216	1	14901	14901		14.838	0	1	130180	+		11989	12209	7921	7981	16378	16378					-0.028567181395374064
LSFGYCFLT	9	Unmodified	_LSFGYCFLT_					0	0	0			REV__ENST00000288986.6_2_3:136667407-136667713:+|nuORF	REV__ENST00000288986.6_2_3:136667407-136667713:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7518310546875	2	525.751879	1049.4892	0.4834	0.00025415	-0.2968	-0.00015604	0.18661	9.811E-05	525.7517816758265	70.603	0.26806	70.663	70.596	70.864	0.060562					17	10	2	0	0	0	0.22344	1	16491	16491		15.847	1.2655	1	89893	+		11990	11313	7922	7982	16379	16379					-0.033560930687599466
LSFQVAIGW	9	Unmodified	_LSFQVAIGW_					0	0	0			REV__ENST00000451003.5_1_2:27275405-27275867:+|nuORF	REV__ENST00000451003.5_1_2:27275405-27275867:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.77880859375	2	510.779285	1019.54402	-0.15244	-7.7865E-05	-0.898	-0.00045868	-1.0504	-0.00053654	510.7787704315397	28.527	0.43443	28.527	28.405	28.84	0					26	19	2	0	0	0	0.29105	1	3866	3866		7.9102	0.62092	1	31457	+		11991	11927	7923	7983	16380	16380					0.0350266179417531
LSFRKGETI	9	Unmodified	_LSFRKGETI_					0	0	0			REV__MROH9|p.V381I|1|0.17|ENSG00000117501|chr1:170992276-170992276|G/A|missense_variant	REV__MROH9|p.V381I|1|0.17|ENSG00000117501|chr1:170992276-170992276|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2869873046875	2	525.800749	1049.58694	0.15559	8.1812E-05	-0.019494	-1.025E-05	0.1361	7.1561E-05	525.8006389113146	52.579	0.86626	52.579	52.368	53.234	0					68	31	4	0	0	0	0.20358	1	11224	11224		18.146	0.011366	1	585920	+		11992	12739	7924	7984	16381	16381					0.06413431851638052
LSFSLRTVF	9	Unmodified	_LSFSLRTVF_					0	0	0			REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF	REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.3056640625	2	535.305667	1068.59678	0.50316	0.00026934	-0.044232	-2.3678E-05	0.45892	0.00024566	535.3056357853197	62.766	2.5587	62.766	62.473	65.032	0					252	93	5	0	0	0	0.083124	3	14338	14338;14387;14435		36.127	3.3413	1	10333000	+		11993	12181	7925	7985	16382;16383;16384	16382					0.06522619856991696
LSFSLRTVF	9	Unmodified	_LSFSLRTVF_					0	0	0			REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF	REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.3058471679688	2	535.305667	1068.59678	0.62393	0.000334	-0.10613	-5.681E-05	0.51781	0.00027719	535.3055804071988	62.625	2.5886	62.697	62.45	65.038	0.072701					226	96	5	0	0	0	0.065576	2	14158	14158;14204		39.95	3.3413	1	9545000	+		11994	12181	7925	7985	16385;16386	16385					0.06522619856991696
LSGFRVDFTL	10	Unmodified	_LSGFRVDFTL_					0	0	0		nc|ENSG00000124900|Q9BSJ1-2|TRIM51;ENSG00000124900|ENST00000449290|TRIM51	nc|ENSG00000124900|Q9BSJ1-2|TRIM51	nc|ENSG00000124900|Q9BSJ1-2|TRIM51	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.813720703125	2	577.813856	1153.61316	0.34087	0.00019696	-1.1574	-0.00066879	-0.81657	-0.00047182	578.3145590549702	69.427	0.52148	69.489	69.335	69.857	0.062126					29	18	2	0	0	0	0.44727	1	16108	16108		5.2969	2.0156	1	132780			11995	2278	7926	7986	16387	16387					0.04249701023104535
LSGYFVPFIV	10	Unmodified	_LSGYFVPFIV_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3079833984375	2	571.318243	1140.62193	0.24482	0.00013987	0.34763	0.00019861	0.59245	0.00033848	571.3181632818778	78.164	0.55579	78.164	77.984	78.54	0					49	18	5	0	0	0	0.27354	1	18942	18942		25.399	2.2509	1	458470			11996	4070	7927	7987	16388	16388					0.057246746595410514
LSHEESVSF	9	Unmodified	_LSHEESVSF_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.7430419921875	2	517.743096	1033.47164	-0.14091	-7.2954E-05	0.21085	0.00010916	0.069939	3.621E-05	517.7431827724969	40.163	1.6022	40.163	39.722	41.324	0					132	56	4	0	0	0	0.0027323	2	7327	7327;7370		111.29	65.266	1	1350900			11997	1490	7928	7988	16389;16390	16389					-0.04375717070047358
LSHEESVSF	9	Unmodified	_LSHEESVSF_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.7431640625	2	517.743096	1033.47164	-0.035388	-1.8322E-05	0.19435	0.00010062	0.15896	8.2303E-05	517.7431822649299	40.066	1.4515	40.154	39.788	41.239	0.088562					122	56	4	0	0	0	0.0042692	2	7172	7172;7215		99.799	61.825	1	1126600			11998	1490	7928	7988	16391;16392	16391					-0.04375717070047358
LSHETVTIA	9	Unmodified	_LSHETVTIA_					0	0	0		ENST00000402743.2_1_1:44587827-44588175:-|nuORF	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.76336669921875	2	485.763832	969.513111	-0.34244	-0.00016634	-0.32572	-0.00015822	-0.66816	-0.00032457	485.76352424170204	32.276	0.9678	32.276	31.937	32.905	0					98	42	3	0	0	0	0.25979	1	5023	5023		11.64	3.7301	1	199500			11999	6368	7929	7989	16393	16393					0.02713463689292439
LSHLSPEIK	9	Unmodified	_LSHLSPEIK_					0	0	0			REV__ENSG00000139780|ENST00000267273|METTL21C	REV__ENSG00000139780|ENST00000267273|METTL21C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2955322265625	2	512.295299	1022.57605	0.0081888	4.1951E-06	0.14164	7.2559E-05	0.14982	7.6754E-05	512.2952941329708	43.828	0.85307	43.917	43.658	44.512	0.088924					67	29	3	0	0	0	0.27332	1	8401	8401		10.074	2.7847	1	205510	+		12000	9353	7930	7990	16394	16394					0.06566029477323809
LSHWVDIAL	9	Unmodified	_LSHWVDIAL_					0	0	0		ENST00000482437.5_1_1:100606401-100609704:+|nuORF;ENSG00000122435|ENST00000370141|TRMT13	ENST00000482437.5_1_1:100606401-100609704:+|nuORF	ENST00000482437.5_1_1:100606401-100609704:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2904052734375	2	527.290017	1052.56548	-0.015171	-7.9993E-06	0.26491	0.00013968	0.24974	0.00013168	527.2901659649864	72.696	0.61646	72.696	72.499	73.115	0					44	21	3	0	0	0	0.25979	1	17208	17208		11.64	0	1	269480			12001	2181	7931	7991	16395	16395					0.04130046822865552
LSHWYPFKR	9	Unmodified	_LSHWYPFKR_					0	0	0		tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.359619140625	2	617.330008	1232.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.479	1	36.561	36.061	37.061	0.081715								0	0	0	0.2927	1	6109	6109		0.52476	0	1				12002	13542	7932	7992	16396	16396					0.038445332167157176
LSIFFFFFFFF	11	Unmodified	_LSIFFFFFFFF_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|119|2|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|119|2|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|119|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.2845458984375	3	503.593287	1507.75803	0.2932	0.00014766	-0.34742	-0.00017496	-0.054215	-2.7302E-05	503.927413531852	84.019	0.77036	84.041	83.471	84.241	0.021744					29	27	2	0	0	0	0.31013	1	20396	20396		10.315	0	1	49440			12003	7401	7933	7993	16397	16397					0.02446369170206708
LSIFFFFFFFF	11	Unmodified	_LSIFFFFFFFF_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|119|2|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|119|2|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|119|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7767333984375	3	503.593287	1507.75803	0.5898	0.00029702	0.34638	0.00017444	0.93618	0.00047145	503.92772429716655	80.301	0.21736	80.324	80.219	80.436	0.023605					10	7	2	0	0	0	0.31051	1	19402	19402		7.0371	0	1	76754			12004	7401	7933	7993	16398	16398					0.02446369170206708
LSIFYLCVFV	10	Unmodified	_LSIFYLCVFV_					0	0	0			REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|2	REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3132934570312	2	602.327753	1202.64095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.63	1	78.63	78.13	79.13	0								0	0	0	0.33648	1	19045	19045		4.3292	0	1		+		12005	7779	7934	7994	16399	16399					0.04773887958958767
LSIGVSIAA	9	Unmodified	_LSIGVSIAA_					0	0	0			REV__ENSG00000175857|ENST00000502276|GAPT	REV__ENSG00000175857|ENST00000502276|GAPT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.1982421875	2	415.752736	829.490919	-0.57917	-0.00024079	-0.61141	-0.00025419	-1.1906	-0.00049499	415.7526201907006	41.582	0.27663	41.672	41.539	41.816	0.089764					19	11	2	0	0	0	0.24635	1	7627	7627		10.824	0	1	35309	+		12006	10389	7935	7995	16400	16400					0.06935284011501608
LSIRNFKNI	9	Unmodified	_LSIRNFKNI_					0	0	0		tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.8297119140625	2	552.82984	1103.64513	0.30424	0.0001682	-0.2033	-0.00011239	0.10095	5.5807E-05	552.829634766102	49.219	0.37804	49.295	49.106	49.484	0.076607					26	13	3	0	0	0	0.27929	1	9943	9943		9.3831	1.2276	1	157450			12007	13552	7936	7996	16401	16401					0.09745113496887825
LSIRNFKNI	9	Unmodified	_LSIRNFKNI_					0	0	0		tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	552.82984	1103.64513	0.30933	0.00017101	-0.091797	-5.0748E-05	0.21753	0.00012026	552.8299820370713	49.33	0.47864	49.33	49.143	49.621	0	0.017661	8.9377E-05	NaN	9.3831	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149270			12008	13552	7936	7996							0.09745113496887825
LSITPGMATP	10	Unmodified	_LSITPGMATP_					0	0	0			REV__ENST00000515051.1_1_5:175956671-175956806:-|nuORF	REV__ENST00000515051.1_1_5:175956671-175956806:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.26434326171875	2	494.26261	986.510668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.34	1	25.34	24.84	25.84	0								0	0	0	0.33892	1	2946	2946		1.4819	0.68827	1		+		12009	9534	7937	7997	16402	16402					0.016872919599791203
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2975158691406	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.903	1	39.903	39.403	40.403	0								0	0	0	0.34185	1	7264	7264		0.094841	0	1				12010	13612	7938	7998	16403	16403					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.29742431640625	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.124	1	40.124	39.624	40.624	0								0	0	0	0.34185	1	7331	7331		0.094841	0	1				12011	13612	7938	7998	16404	16404					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2976379394531	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.258	1	41.258	40.758	41.758	0								0	0	0	0.34185	1	7671	7671		0.094841	0	1				12012	13612	7938	7998	16405	16405					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2973327636719	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.042	1	43.042	42.542	43.542	0								0	0	0	0.34185	1	8211	8211		0.094841	0	1				12013	13612	7938	7998	16406	16406					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.29766845703125	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.65	1	67.65	67.15	68.15	0								0	0	0	0.34185	1	15694	15694		0.094841	0	1				12014	13612	7938	7998	16407	16407					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2975158691406	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.78	1	117.78	117.28	118.28	0								0	0	0	0.34185	1	29848	29848		0.094841	0	1				12015	13612	7938	7998	16408	16408					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2976379394531	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.413	1	34.489	33.989	34.989	0.076244								0	0	0	0.34185	1	5490	5490		0.094841	0.094841	1				12016	13612	7938	7998	16409	16409					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2975769042969	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.215	1	37.299	36.799	37.799	0.084476								0	0	0	0.34185	1	6329	6329		0.094841	0	1				12017	13612	7938	7998	16410	16410					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2976379394531	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.47	1	37.555	37.055	38.055	0.084476								0	0	0	0.34185	1	6406	6406		0.094841	0	1				12018	13612	7938	7998	16411	16411					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.29766845703125	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.484	1	38.57	38.07	39.07	0.08688								0	0	0	0.34185	1	6710	6710		0.094841	0	1				12019	13612	7938	7998	16412	16412					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2972412109375	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.79	1	40.88	40.38	41.38	0.089645								0	0	0	0.34185	1	7404	7404		0.094841	0	1				12020	13612	7938	7998	16413	16413					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.29754638671875	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.49	1	42.579	42.079	43.079	0.089764								0	0	0	0.34185	1	7917	7917		0.094841	0	1				12021	13612	7938	7998	16414	16414					0.22417277055819795
LSKILRAKKHK	11	Unmodified	_LSKILRAKKHK_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2972717285156	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.217	1	45.304	44.804	45.804	0.08754								0	0	0	0.34185	1	8740	8740		0.094841	0.094841	1				12022	13612	7938	7998	16415	16415					0.22417277055819795
LSKPRNPFG	9	Unmodified	_LSKPRNPFG_					0	0	0			REV__nc|ENSG00000188452|Q49MI3-5|CERKL	REV__nc|ENSG00000188452|Q49MI3-5|CERKL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.28778076171875	2	508.287808	1014.56106	0.14661	7.4521E-05	-0.37604	-0.00019114	-0.22943	-0.00011662	508.2875987156074	49.706	0.98293	49.706	49.452	50.435	0					93	34	4	0	0	0	0.1789	1	10257	10257		29.082	6.3453	1	820470	+		12023	10771	7939	7999	16416	16416					0.05436582399988765
LSKVMIIEN	9	Unmodified	_LSKVMIIEN_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.3135375976562	2	523.79936	1045.58417	0.35403	0.00018544	-3.1127	-0.0016304	-2.7587	-0.001445	523.7970058074156	68.253	0.10328	68.316	68.28	68.383	0.063507					5	3	2	0	0	0	0.24021	1	15729	15729		13.906	0	1	68295			12024	322	7940	8000	16417	16417					0.06319840402443333
LSLAKKKKKK	10	Unmodified	_LSLAKKKKKK_					0	0	0		ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.4161987304688	2	586.416083	1170.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.12	1	115.13	114.63	115.63	0.013092								0	0	0	0.34018	1	29271	29271		0	0	1				12025	5787	7941	8001	16418	16418					0.23903684904257716
LSLAKKKKKK	10	Unmodified	_LSLAKKKKKK_					0	0	0		ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.4157104492188	2	586.416083	1170.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.88	1	115.9	115.4	116.4	0.013077								0	0	0	0.34018	1	29439	29439		0	0	1				12026	5787	7941	8001	16419	16419					0.23903684904257716
LSLAKKKKKK	10	Unmodified	_LSLAKKKKKK_					0	0	0		ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.416259765625	2	586.416083	1170.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.14	1	116.15	115.65	116.65	0.013062								0	0	0	0.34018	1	29488	29488		0	0	1				12027	5787	7941	8001	16420	16420					0.23903684904257716
LSLCLYWL	8	Unmodified	_LSLCLYWL_					0	0	0		LRRTM1|p.G7S|1|0.38|ENSG00000162951|chr2:80303801-80303801|C/T|missense_variant	LRRTM1|p.G7S|1|0.38|ENSG00000162951|chr2:80303801-80303801|C/T|missense_variant	LRRTM1|p.G7S|1|0.38|ENSG00000162951|chr2:80303801-80303801|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.76129150390625	2	505.772614	1009.53067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.035	1	40.124	39.624	40.624	0.088562								0	0	0	0.38822	1	7178	7178		2.3027	0	1				12028	7420	7942	8002	16421	16421					0.026290876905704863
LSLHASGF	8	Unmodified	_LSLHASGF_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22784423828125	2	416.221603	830.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.25	1	51.319	50.819	51.819	0.069874								0	0	0	0.38822	1	10559	10559		5.2307	2.6532	1		+		12029	10072	7943	8003	16422	16422					0.006655576631942495
LSLQFEPVL	9	Unmodified	_LSLQFEPVL_					0	0	0		nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L	nc|ENSG00000121210|A2VDJ0-6|TMEM131L	nc|ENSG00000121210|A2VDJ0-6|TMEM131L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3003540039062	2	523.30005	1044.58555	0.16583	8.678E-05	0.93459	0.00048907	1.1004	0.00057585	523.3002138428901	86.334	0.40578	86.334	86.179	86.585	0					34	14	3	0	0	0	0.13341	1	21412	21412		26.268	9.1552	1	162580			12030	2147	7944	8004	16423	16423					0.06503797762843533
LSLQFEPVL	9	Unmodified	_LSLQFEPVL_					0	0	0		nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L	nc|ENSG00000121210|A2VDJ0-6|TMEM131L	nc|ENSG00000121210|A2VDJ0-6|TMEM131L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3001098632812	2	523.30005	1044.58555	0.25149	0.0001316	1.0481	0.00054848	1.2996	0.00068009	523.3004135669628	86.326	0.46904	86.351	86.117	86.586	0.025169					36	17	3	0	0	0	0.2359	1	21252	21252		14.405	5.0223	1	204830			12031	2147	7944	8004	16424	16424					0.06503797762843533
LSLQQHLVL	9	Unmodified	_LSLQQHLVL_					0	0	0		nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.795166015625	2	525.818941	1049.62333	-0.00012393	-6.5167E-08	0.11536	6.0656E-05	0.11523	6.0591E-05	525.8189110541668	48.814	0.52181	48.89	48.633	49.155	0.076603					28	18	3	0	0	0	0.25052	1	9824	9824		8.7454	0.58988	1	55794			12032	7541	7945	8005	16425	16425					0.10050308748327552
LSLQQHLVL	9	Unmodified	_LSLQQHLVL_					0	0	0		nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	525.818941	1049.62333	0.15245	8.0163E-05	-0.40325	-0.00021204	-0.2508	-0.00013188	525.8186493285959	48.882	0.40556	48.882	48.683	49.088	0	-0.0038864	-0.00020669	NaN	8.7454	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66374			12033	7541	7945	8005							0.10050308748327552
LSLRLLSIF	9	Unmodified	_LSLRLLSIF_					0	0	0			REV__ENST00000447144.5_1_3:9714379-9730718:+|nuORF	REV__ENST00000447144.5_1_3:9714379-9730718:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3523559570312	2	531.33951	1060.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.371	1	81.371	80.871	81.871	0								0	0	0	0.25992	1	19881	19881		7.2892	0	1		+		12034	9952	7946	8006	16426	16426					0.13656069787793967
LSLTLVNSSR	10	Unmodified	_LSLTLVNSSR_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3170776367188	2	545.316763	1088.61897	0.68775	0.00037504	0.10642	5.8032E-05	0.79417	0.00043308	545.3166235342397	84.597	2.8839	84.597	83.9	86.784	0					354	131	3	0	0	0	0.42901	1	20837	20837		8.7454	3.4485	1	6479300	+		12035	8573	7947	8007	16427	16427					0.07820799534761136
LSLTLVNSSR	10	Unmodified	_LSLTLVNSSR_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.317138671875	2	545.316763	1088.61897	0.53519	0.00029185	0.25857	0.000141	0.79375	0.00043285	545.3167173682548	84.635	2.8459	84.658	83.84	86.686	0.023125					387	132	3	0	0	0	0.42901	1	20887	20887		8.7454	3.0136	1	7199100	+		12036	8573	7947	8007	16428	16428					0.07820799534761136
LSLVHDVRF	9	Unmodified	_LSLVHDVRF_					0	0	0		ENST00000483781.5_1_2:98330105-98349944:+|nuORF;ENSG00000115085|ENST00000264972|ZAP70	ENST00000483781.5_1_2:98330105-98349944:+|nuORF	ENST00000483781.5_1_2:98330105-98349944:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7826538085938	2	543.308741	1084.60293	0.42207	0.00022931	-0.82928	-0.00045055	-0.40721	-0.00022124	543.3088059351365	47.197	0.43973	47.197	47.028	47.467	0					31	14	3	0	0	0	0.23598	1	9500	9500		15.847	0	1	121240			12037	1874	7948	8008	16429	16429					0.06401138088517655
LSMGSASYYDF	11	Unmodified	_LSMGSASYYDF_					0	0	0			REV__ENSG00000157103|ENST00000287766|SLC6A1	REV__ENSG00000157103|ENST00000287766|SLC6A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.763427734375	2	620.763171	1239.51179	0.011282	7.0036E-06	-0.048226	-2.9937E-05	-0.036943	-2.2933E-05	620.7632435244748	60.852	1.0512	60.852	60.456	61.508	0					92	38	3	0	0	0	0.38057	3	13688	13688;13738;13801		8.7454	0	1	517360	+		12038	9768	7949	8009	16430;16431;16432	16430					-0.09838538461804092
LSMGSASYYDF	11	Unmodified	_LSMGSASYYDF_					0	0	0			REV__ENSG00000157103|ENST00000287766|SLC6A1	REV__ENSG00000157103|ENST00000287766|SLC6A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.7635498046875	2	620.763171	1239.51179	-0.032855	-2.0395E-05	-0.38726	-0.0002404	-0.42012	-0.00026079	620.7632197318931	60.741	1.0251	60.814	60.427	61.453	0.073418					79	35	3	0	0	0	0.34344	3	13470	13470;13546;13621		13.042	0	1	428030	+		12039	9768	7949	8009	16433;16434;16435	16433					-0.09838538461804092
LSMQAEATI	9	Unmodified	_LSMQAEATI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2442321777344	2	482.244418	962.474282	-0.25894	-0.00012487	1.98	0.00095483	1.721	0.00082996	482.2454801974725	46.253	0.6806	46.253	45.703	46.384	0					36	23	2	0	0	0	0.31086	1	9206	9206		5.2969	0	1	40244			12040	2505	7950	8010	16436	16436					-0.008455849367464907
LSMTHEDQKL	10	Unmodified	_LSMTHEDQKL_					0	0	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7793579101562	2	601.297713	1200.58087	0.32006	0.00019245	-0.13399	-8.0565E-05	0.18607	0.00011188	601.2976576000207	46.553	0.85862	46.636	46.546	47.405	0.083096					68	43	2	0	0	0	0.42901	1	9277	9277		8.7454	0	1	308610			12041	580	7951	8011	16437	16437					-0.011394544422046238
LSNEKPVSL	9	Unmodified	_LSNEKPVSL_					0	0	0		nc|ENSG00000132952|Q5W0Q7-2|USPL1;ENSG00000132952|ENST00000255304|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.77935791015625	2	493.779482	985.544411	0.5038	0.00024877	-0.11588	-5.7222E-05	0.38791	0.00019154	493.7793806562356	67.73	0.48349	67.73	67.515	67.998	0					28	18	2	0	0	0	0.2546	1	15693	15693		12.241	1.4411	1	246040			12042	2606	7952	8012	16438	16438					0.05106036723384477
LSNGNRTLT	9	Unmodified	_LSNGNRTLT_					0	0	0		nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000079385|ENST00000161559|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;CEACAM1|p.I383Nfs*15|1|0.24|ENSG00000079385|chr19:42519046-42519047|-/T|frameshift_variant;CEACAM5|p.T377Mfs*7|1|0.06|ENSG00000105388|chr19:41717626-41717641|CCCTCACTCTACTCAG/-|frameshift_variant;nc|ENSG00000079385|P13688-11|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000079385|P13688-3|CEACAM1	nc|ENSG00000079385|P13688-3|CEACAM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2531433105469	2	488.26453	974.514508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.758	1	27.84	27.34	28.34	0.082134								0	0	0	0.27782	1	3511	3511		3.5965	0	1				12043	120	7953	8013	16439	16439					0.026230977780414833
LSNHVTNSL	9	Unmodified	_LSNHVTNSL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;DNAH17-TMC6|1|fusion;DNAH17|p.R1086W|1|0.27|ENSG00000187775|chr17:78530371-78530371|G/A|missense_variant;chr17:78529694-78530343|434|13.88|0.14|6.59|-|1|DNAH17,DNAH17|1	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2431335449219	2	492.759081	983.503609	-0.068446	-3.3727E-05	-0.60731	-0.00029926	-0.67576	-0.00033299	492.7586324521748	30.425	0.44398	30.425	30.221	30.665	0					34	24	2	0	0	0	0.23598	1	4408	4408		15.847	4.2069	1	30514			12044	5131	7954	8014	16440	16440					0.011196954037473006
LSNHVTNSL	9	Unmodified	_LSNHVTNSL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;DNAH17-TMC6|1|fusion;DNAH17|p.R1086W|1|0.27|ENSG00000187775|chr17:78530371-78530371|G/A|missense_variant;chr17:78529694-78530343|434|13.88|0.14|6.59|-|1|DNAH17,DNAH17|1	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2432861328125	2	492.759081	983.503609	-0.054846	-2.7026E-05	-0.042645	-2.1014E-05	-0.097491	-4.804E-05	492.75897470789374	30.373	0.4064	30.448	30.312	30.718	0.075403					37	25	2	0	0	0	0.2446	1	4269	4269		11.64	0.81637	1	17227			12045	5131	7954	8014	16441	16441					0.011196954037473006
LSPDLGQTAL	10	Unmodified	_LSPDLGQTAL_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.77630615234375	2	507.776939	1013.53933	0.054616	2.7733E-05	-0.18825	-9.5591E-05	-0.13364	-6.7858E-05	507.7767049545793	48.898	0.8469	48.975	48.75	49.597	0.076607					53	30	3	0	0	0	0.29844	1	9909	9909		22.736	0.98964	1	366260		+	12046	228	7955	8015	16442	16442					0.033097328607595955
LSPINESAL	9	Unmodified	_LSPINESAL_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.7503356933594	2	472.258382	942.502212	0.20985	9.9102E-05	-0.1423	-6.7203E-05	0.067545	3.1899E-05	472.25822232485484	67.651	0.56952	67.651	67.428	67.998	0					40	21	3	0	0	0	0.23216	1	15738	15738		14.838	2.5976	1	240510	+		12047	8401	7956	8016	16443	16443					0.028660613149895653
LSPQDQVSL	9	Unmodified	_LSPQDQVSL_					0	0	0			REV__nc|ENSG00000080802|O95628-6|CNOT4	REV__nc|ENSG00000080802|O95628-6|CNOT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7613220214844	2	493.761289	985.508025	0.66902	0.00033034	-0.4688	-0.00023148	0.20022	9.886E-05	493.7611128993312	54.932	0.86229	54.932	54.635	55.497	0					96	31	5	0	0	0	0.056368	1	11876	11876		41.956	3.78	1	3799700	+		12048	12757	7957	8017	16444	16444					0.014691598266608707
LSPSHLVML	9	Unmodified	_LSPSHLVML_					0	0	0			REV__ENSG00000181744|ENST00000315691|DIPK2A	REV__ENSG00000181744|ENST00000315691|DIPK2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.775634765625	2	498.78097	995.547388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.454	1	79.454	78.954	79.954	0								0	0	0	0.19992	1	19296	19296		18.135	5.6034	1		+		12049	10539	7958	8018	16445	16445					0.04943588576554703
LSPTELISF	9	Unmodified	_LSPTELISF_					0	0	0			REV__ENST00000526104.5_2_11:214381-214642:+|nuORF	REV__ENST00000526104.5_2_11:214381-214642:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7767333984375	2	503.776408	1005.53826	0.50644	0.00025513	0.061166	3.0814E-05	0.56761	0.00028595	503.77630887419446	80.097	0.89281	80.124	79.851	80.744	0.026436					80	31	4	0	0	0	0.10067	1	19402	19402		32.305	1.6689	1	1347600	+		12050	12326	7959	8019	16446	16446					0.035715184918672094
LSQGLSSHKKY	11	Unmodified	_LSQGLSSHKKY_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22802734375	3	416.562938	1246.66699	0.048659	2.027E-05	0.38278	0.00015945	0.43144	0.00017972	416.5629436424522	39.042	0.48546	39.129	38.967	39.453	0.08688					44	19	3	0	0	0	0.31097	1	6838	6838		1.2148	0	1	94233	+		12051	10353	7960	8020	16447	16447					0.053518734548106295
LSQPSFFALL	10	Unmodified	_LSQPSFFALL_					0	0	0			REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF	REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8031616210938	2	561.813325	1121.6121	0.51038	0.00028674	0.30044	0.00016879	0.81081	0.00045553	561.8133708630327	74.945	0.61612	74.945	74.635	75.251	0					33	16	3	0	0	0	0.31585	1	17859	17859		10.824	7.2274	1	549860	+		12052	11818	7961	8021	16448	16448					0.05615486654187407
LSQQAQLR	8	Unmodified	_LSQQAQLR_					0	0	0		ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2687072753906	2	472.269616	942.524678	-0.33321	-0.00015736	-0.21849	-0.00010319	-0.5517	-0.00026055	472.26932510671986	25.419	0.24345	25.515	25.412	25.655	0.096073					31	20	2	0	0	0	0.53894	1	2857	2857		2.0598	0	1	22269			12053	6382	7962	8022	16449	16449					0.05111705503270514
LSQQAQLR	8	Unmodified	_LSQQAQLR_					0	0	0		ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	472.269616	942.524678	-0.41226	-0.0001947	-0.20844	-9.8439E-05	-0.6207	-0.00029314	472.2693975907818	25.556	0.28468	25.556	25.417	25.702	0	0.020323	7.2264E-06	NaN	2.0598	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11101			12054	6382	7962	8022							0.05111705503270514
LSQQPEPEL	9	Unmodified	_LSQQPEPEL_					0	0	0			REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF	REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.7666015625	2	520.766571	1039.51859	0.23584	0.00012282	-0.19935	-0.00010382	0.036488	1.9002E-05	520.7664493835161	50.937	0.76518	51.006	50.738	51.503	0.069878					82	29	4	0	0	0	0.020768	1	10532	10532		57.722	0	1	3570200	+		12055	10134	7963	8023	16450	16450					0.0004114248110909102
LSQYLNKK	8	Unmodified	_LSQYLNKK_					0	0	0			REV__tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1	REV__tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2900695800781	2	497.290017	992.565481	0.28315	0.00014081	-0.15185	-7.5513E-05	0.1313	6.5294E-05	497.28987566797446	17.089	0.19935	17.173	17.077	17.276	0.083694					40	24	2	0	0	0	0.53894	1	781	781		2.0598	0	1	13633	+		12056	13271	7964	8024	16451	16451					0.06890046822888962
LSQYQAALV	9	Unmodified	_LSQYQAALV_					0	0	0			REV__nc|ENSG00000087470|O00429-4|DNM1L	REV__nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.77435302734375	2	496.7742	991.533846	0.34777	0.00017276	0.16116	8.0062E-05	0.50893	0.00025282	496.7741880965069	56.384	0.83815	56.384	56.162	57	0					62	30	3	0	0	0	0.25979	1	12281	12281		11.64	1.5664	1	522950	+		12057	8282	7965	8025	16452	16452					0.03774054068935584
LSRFAYILP	9	Unmodified	_LSRFAYILP_					0	0	0			REV__ENSG00000124089|ENST00000243911|MC3R	REV__ENSG00000124089|ENST00000243911|MC3R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.8397827148438	2	540.316035	1078.61752	0.51861	0.00028021	0.5421	0.0002929	1.0607	0.00057312	540.3164532001992	76.774	0.79465	76.813	76.552	77.347	0.03923					73	25	4	0	0	0	0.25979	1	18368	18368		11.64	0.81637	1	1686300	+		12058	8941	7966	8026	16453	16453					0.08135210236650892
LSRFAYILP	9	Unmodified	_LSRFAYILP_					0	0	0			REV__ENSG00000124089|ENST00000243911|MC3R	REV__ENSG00000124089|ENST00000243911|MC3R	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	540.316035	1078.61752	0.36994	0.00019989	0.8565	0.00046278	1.2264	0.00066267	540.3166950227283	76.892	0.68163	76.892	76.55	77.231	0	0.039253	0.00024121	NaN	11.64	69	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1631400	+		12059	8941	7966	8026							0.08135210236650892
LSRFLHFYF	9	Unmodified	_LSRFLHFYF_					0	0	0			REV__L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|30|3|anti-sense	REV__L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|30|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.5539245605469	3	410.553715	1228.63931	0.23395	9.6049E-05	-0.20219	-8.3009E-05	0.03176	1.3039E-05	410.5535560977894	69.869	1.3284	69.929	69.641	70.969	0.060562					152	53	4	0	0	0	0.29718	3	16367	16171;16300;16367		7.1017	0	1	1003200	+		12060	12698	7967	8027	16454;16455;16456	16456					0.034140149852191826
LSRKQWRNRQK	11	Unmodified	_LSRKQWRNRQK_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.29254150390625	3	500.627047	1498.85931	0.1867	9.3466E-05	-0.13829	-6.9231E-05	0.04841	2.4235E-05	500.96108503659497	56.274	0.108	56.34	56.28	56.388	0.066448					6	3	2	0	0	0	0.31098	1	12102	12102		1.1098	0.096179	1	49180			12061	2561	7968	8028	16457	16457					0.12983633645490045
LSRLLWRRL	9	Unmodified	_LSRLLWRRL_					0	0	0		nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2108154296875	2	606.888024	1211.7615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.02	1	105.06	104.56	105.56	0.034004								0	0	0	0.2927	1	26864	26864		0.52476	0	1				12062	669	7969	8029	16458	16458					0.16408476787455584
LSRVVESIL	9	Unmodified	_LSRVVESIL_					0	0	0			REV__ENST00000513806.1_1_4:3230649-3237073:+|nuORF	REV__ENST00000513806.1_1_4:3230649-3237073:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.25244140625	2	508.310949	1014.60735	0.15869	8.0666E-05	-0.19269	-9.7947E-05	-0.033998	-1.7282E-05	508.3109023251404	60.095	0.5824	60.168	59.967	60.55	0.072342					30	20	2	0	0	0	0.1789	1	13231	13231		29.082	0	1	97227	+		12063	10855	7970	8030	16459	16459					0.1006260251143658
LSRYFLLN	8	Unmodified	_LSRYFLLN_					0	0	0			REV__ENST00000590137.1_1_17:74143442-74143655:+|nuORF	REV__ENST00000590137.1_1_17:74143442-74143655:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.787109375	2	513.292559	1024.57057	0.74793	0.00038391	-1.7448	-0.0008956	-0.99689	-0.00051169	513.2914432106061	67.277	0.86482	67.342	67.011	67.876	0.065071					62	29	4	0	0	0	0.41225	1	15371	15371		24.674	4.2203	1	491990	+		12064	12572	7971	8031	16460	16460					0.05926350685513171
LSRYNLLD	8	Unmodified	_LSRYNLLD_					0	0	0			REV__ENST00000569504.5_1_16:67859786-67861483:+|nuORF	REV__ENST00000569504.5_1_16:67859786-67861483:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.25360107421875	2	497.271824	992.529095	-0.035503	-1.7654E-05	-0.039372	-1.9579E-05	-0.074874	-3.7233E-05	497.2715948136514	42.979	0.20087	43.069	42.915	43.116	0.089764					11	7	2	0	0	0	0.3576	1	8037	8037		8.5933	0	1	33881	+		12065	8462	7972	8032	16461	16461					0.032531699261767244
LSSGLYHY	8	Unmodified	_LSSGLYHY_					0	0	0		nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5	nc|ENSG00000139624|Q8N5B7-2|CERS5	nc|ENSG00000139624|Q8N5B7-2|CERS5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7768249511719	2	470.232168	938.449782	-0.2443	-0.00011488	-4.0063	-0.0018839	-4.2506	-0.0019988	470.2302990606838	32.908	0.67542	32.908	32.675	33.35	0					61	27	3	0	0	0	0.3576	1	5091	5091		0.79363	0	1	77707			12066	2977	7973	8033	16462	16462					-0.021904770279661534
LSSGLYHY	8	Unmodified	_LSSGLYHY_					0	0	0		nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5	nc|ENSG00000139624|Q8N5B7-2|CERS5	nc|ENSG00000139624|Q8N5B7-2|CERS5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	470.232168	938.449782	-0.29624	-0.0001393	-3.9065	-0.001837	-4.2027	-0.0019763	470.2302533779538	32.826	0.59443	32.899	32.712	33.307	0.07378	-0.004313	3.6791E-05	NaN	0.79363	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57321			12067	2977	7973	8033							-0.021904770279661534
LSSMDPVAL	9	Unmodified	_LSSMDPVAL_					0	0	0			REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.74127197265625	2	466.741511	931.468469	0.2653	0.00012383	-0.5209	-0.00024313	-0.2556	-0.0001193	466.74125867262137	58.053	0.61998	58.053	57.597	58.217	0					33	21	3	0	0	0	0.26684	1	12812	12812		10.824	1.4765	1	189100	+		12068	10563	7974	8034	16463	16463					-6.8344842247825E-06
LSSMDPVAL	9	Unmodified	_LSSMDPVAL_					0	0	0			REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	466.741511	931.468469	0.2653	0.00012383	-0.5209	-0.00024313	-0.2556	-0.0001193	466.74125867262137	58.053	0.61998	58.053	57.597	58.217	0	-0.10654	-1.3192E-05	NaN	10.824	33	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189100	+		12069	10563	7974	8034							-6.8344842247825E-06
LSSMDPVAL	9	Unmodified	_LSSMDPVAL_					0	0	0			REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	466.741511	931.468469	0.018442	8.6078E-06	-0.28521	-0.00013312	-0.26677	-0.00012451	466.7412326056191	58.196	0.20318	58.266	58.184	58.387	0.070477	0.10654	0.00020682	NaN	10.824	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89920	+		12070	10563	7974	8034							-6.8344842247825E-06
LSSPWLPLS	9	Unmodified	_LSSPWLPLS_					0	0	0			REV__ENST00000367558.5_1_1:182568870-182568942:-|nuORF	REV__ENST00000367558.5_1_1:182568870-182568942:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.79107666015625	2	500.279118	998.543683	0.23176	0.00011594	0.11406	5.7061E-05	0.34582	0.000173	500.2791541757336	89.375	0.40645	89.375	89.098	89.505	0					22	15	2	0	0	0	0.29576	1	22297	22297		7.2892	0.56607	1	83637	+		12071	11567	7975	8035	16464	16464					0.04435242074339385
LSSSSERALGK	11	Unmodified	_LSSSSERALGK_					0	0	0		ENST00000422882.1_2_6:58276104-58276374:-|nuORF;ENST00000418368.1_2_6:58275323-58287466:-|nuORF	ENST00000422882.1_2_6:58276104-58276374:-|nuORF	ENST00000422882.1_2_6:58276104-58276374:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8079223632812	2	567.809302	1133.60405	-0.33241	-0.00018875	-1.4086	-0.00079983	-1.741	-0.00098858	567.8085160799337	42.123	1.0979	42.213	41.79	42.887	0.089764					80	41	3	0	0	0	0.39744	1	7804	7804		4.897	0.56777	1	110990			12072	6440	7976	8036	16465	16465					0.04259307666757195
LSSYGDPLPFT	11	Unmodified	_LSSYGDPLPFT_					0	0	0			REV__ENSG00000110344|ENST00000252108|UBE4A	REV__ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7952880859375	2	598.795329	1195.5761	0.57655	0.00034524	-0.058361	-3.4946E-05	0.51819	0.00031029	598.7949039063899	85.277	0.70657	85.277	84.898	85.605	0					56	27	3	0	0	0	0.21662	1	21049	21049		27.629	0	1	726180	+		12073	8665	7977	8037	16466	16466					-0.013860153133464337
LSSYGDPLPFT	11	Unmodified	_LSSYGDPLPFT_					0	0	0			REV__ENSG00000110344|ENST00000252108|UBE4A	REV__ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.79541015625	2	598.795329	1195.5761	0.61557	0.0003686	-0.12913	-7.7323E-05	0.48644	0.00029128	598.7951249507101	85.24	0.62635	85.263	85.035	85.661	0.023125					61	25	3	0	0	0	0.26943	1	20881	20881		21.537	0	1	691260	+		12074	8665	7977	8037	16467	16467					-0.013860153133464337
LSTCFGGF	8	Unmodified	_LSTCFGGF_					0	0	0		ADAM29|p.K264Nfs*29|1|0.14|ENSG00000168594|chr4:174976313-174976313|G/-|frameshift_variant;ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant;nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29	ADAM29|p.K264Nfs*29|1|0.14|ENSG00000168594|chr4:174976313-174976313|G/-|frameshift_variant	ADAM29|p.K264Nfs*29|1|0.14|ENSG00000168594|chr4:174976313-174976313|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.1976318359375	2	416.188914	830.363275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.589	1	41.589	41.089	42.089	0								0	0	0	0.38822	1	7772	7772		10.183	4.423	1				12075	12	7978	8038	16468	16468					-0.05869179854153117
LSTDWHLV	8	Unmodified	_LSTDWHLV_					0	0	0			REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF	REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.76397705078125	2	485.753267	969.491981	0.052835	2.5665E-05	0.44673	0.000217	0.49957	0.00024267	485.75342611949884	50.932	0.52586	51.002	50.523	51.049	0.069878					35	19	3	0	0	0	0.53345	1	10454	10454		5.7604	0.52976	1	157010	+		12076	11594	7979	8039	16469	16469					0.0060149838041070325
LSTLRQILY	9	Unmodified	_LSTLRQILY_					0	0	0			REV__ENST00000539080.1_1_12:122865079-122884682:-|nuORF	REV__ENST00000539080.1_1_12:122865079-122884682:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8298950195312	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.31	1	83.31	82.81	83.81	0								0	0	0	0.27427	1	20471	20471		4.3292	2.0265	1		+		12077	12394	7980	8040	16470	16470					0.10094577919812764
LSTNLPVSL	9	Unmodified	_LSTNLPVSL_					0	0	0		ENSG00000164299|ENST00000296739|SPZ1	ENSG00000164299|ENST00000296739|SPZ1	ENSG00000164299|ENST00000296739|SPZ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2763977050781	2	472.276575	942.538597	0.075233	3.5531E-05	-0.091628	-4.3274E-05	-0.016395	-7.7431E-06	472.27648687886847	48.06	1.2696	48.06	47.735	49.004	0					116	43	4	0	0	0	0.30757	1	10003	10003		5.7319	0	1	3158000			12078	3996	7981	8041	16471	16471					0.06502938211713172
LSVGEIHIPG	10	Unmodified	_LSVGEIHIPG_					0	0	0			REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF	REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.81011962890625	2	511.287474	1020.5604	0.48818	0.0002496	2.9942	0.0015309	3.4824	0.0017805	511.7905514925589	92.291	0.30124	92.328	92.223	92.524	0.03653					16	10	2	0	0	0	0.31616	1	23021	23021		10.074	0.6908	1	86411	+		12079	11825	7982	8042	16472	16472					0.05093742960286818
LSVGPDGKPF	10	Unmodified	_LSVGPDGKPF_					0	0	0		ENST00000607100.5_1_2:20075631-20075718:+|nuORF	ENST00000607100.5_1_2:20075631-20075718:+|nuORF	ENST00000607100.5_1_2:20075631-20075718:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7884826660156	2	508.7742	1015.53385	0.30004	0.00015265	0.030592	1.5564E-05	0.33063	0.00016822	508.7741796384627	82.123	0.40947	82.144	81.938	82.347	0.021866					21	14	2	0	0	0	0.38104	1	19971	19971		13.906	0	1	125740			12080	7315	7983	8043	16473	16473					0.026700540689603258
LSVGPDGKPF	10	Unmodified	_LSVGPDGKPF_					0	0	0		ENST00000607100.5_1_2:20075631-20075718:+|nuORF	ENST00000607100.5_1_2:20075631-20075718:+|nuORF	ENST00000607100.5_1_2:20075631-20075718:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	508.7742	1015.53385	0.59645	0.00030346	-0.37132	-0.00018892	0.22512	0.00011454	508.7740340658083	82.156	0.40943	82.156	81.954	82.364	0	0.0055429	-0.0002771	NaN	13.906	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138890			12081	7315	7983	8043							0.026700540689603258
LSVLRDPAL	9	Unmodified	_LSVLRDPAL_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1;ENST00000535123.6_1_12:53673494-53681766:+|nuORF	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2609558105469	2	492.297842	982.581131	-0.16718	-8.23E-05	-0.36352	-0.00017896	-0.5307	-0.00026126	492.29768744033214	45.072	0.34759	45.072	44.857	45.205	0					14	12	2	0	0	0	0.24791	1	8802	8802		10.074	2.1638	1	38059			12082	2734	7984	8044	16474	16474					0.08914333339930636
LSVMTSKRN	9	Oxidation (M)	_LSVM(Oxidation (M))TSKRN_		LSVM(1)TSKRN		LSVM(52)TSKRN	0	0	1			REV__nc|ENSG00000106078|O75128-3|COBL	REV__nc|ENSG00000106078|O75128-3|COBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2819213867188	2	526.281866	1050.54918	0.44734	0.00023543	-0.51864	-0.00027295	-0.071295	-3.7521E-05	526.2815794690686	63.208	2.5634	63.208	62.809	65.372	0					214	93	5	0	0	0	0.028398	2	14395	14280;14395		52.268	52.268	1	6843200	+		12083	8568	7985	8045	16475;16476	16476		338			0.025925975945028767
LSVPKNNLVN	10	Unmodified	_LSVPKNNLVN_					0	0	0			REV__ENSG00000004487|ENST00000400181|KDM1A	REV__ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7767333984375	2	549.319306	1096.62406	0.33759	0.00018544	-1.1659	-0.00064045	-0.8283	-0.000455	549.3187275122658	95.256	0.35568	95.256	95.049	95.405	0					25	15	2	0	0	0	0.31838	1	24086	24086		1.4819	0	1	100180	+		12084	7925	7986	8046	16477	16477					0.0796110339738334
LSVPKNNLVN	10	Unmodified	_LSVPKNNLVN_					0	0	0			REV__ENSG00000004487|ENST00000400181|KDM1A	REV__ENSG00000004487|ENST00000400181|KDM1A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.319306	1096.62406	0.29913	0.00016432	-1.5455	-0.00084899	-1.2464	-0.00068467	549.3184519435201	95.28	0.33463	95.319	95.115	95.45	0.038872	0.031601	-0.00026674	NaN	1.4819	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101440	+		12085	7925	7986	8046							0.0796110339738334
LSVSQVHVD	9	Unmodified	_LSVSQVHVD_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000564350.1_1_15:89826403-89833569:+|nuORF	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2613220214844	2	492.261456	982.50836	0.32735	0.00016114	0.28899	0.00014226	0.61634	0.0003034	492.2616504591702	37.636	0.85913	37.721	37.374	38.233	0.084476					49	30	2	0	0	0	0.32112	1	6420	6420		3.9444	0	1	46165			12086	154	7987	8047	16478	16478					0.016405795465288975
LSVVWWWV	8	Unmodified	_LSVVWWWV_					0	0	0			REV__ENST00000376377.2_1_6:30711131-30711347:-|nuORF	REV__ENST00000376377.2_1_6:30711131-30711347:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.1610107421875	2	537.792195	1073.56984	-0.074315	-3.9966E-05	1.2975	0.0006978	1.2232	0.00065783	537.7928735207453	41.015	0.46352	41.105	40.902	41.365	0.089645					29	16	3	0	0	0	0.35759	1	7520	7520		9.3474	1.1919	1	51111	+		12087	11642	7988	8048	16479	16479					0.03599556036442664
LSVVWWWV	8	Unmodified	_LSVVWWWV_					0	0	0			REV__ENST00000376377.2_1_6:30711131-30711347:-|nuORF	REV__ENST00000376377.2_1_6:30711131-30711347:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	537.792195	1073.56984	-0.37497	-0.00020166	1.5074	0.00081066	1.1324	0.00060901	537.793000689158	41.118	0.43906	41.118	40.967	41.407	0	0.0069165	8.368E-05	NaN	9.3474	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108150	+		12088	11642	7988	8048							0.03599556036442664
LSWEDSGLYQ	10	Unmodified	_LSWEDSGLYQ_					0	0	0		ENSG00000162723|ENST00000368093|SLAMF9;nc|ENSG00000162723|Q96A28-2|SLAMF9	ENSG00000162723|ENST00000368093|SLAMF9	ENSG00000162723|ENST00000368093|SLAMF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2728881835938	2	599.274761	1196.53497	-0.073091	-4.3801E-05	-2.9027	-0.0017395	-2.9758	-0.0017833	599.2729611052113	33.102	0.34372	33.102	32.905	33.248	0					24	13	2	0	0	0	0.46827	1	5256	5256		1.3295	0.80477	1	40197			12089	3852	7989	8049	16480	16480					-0.05543776352783425
LSWWPWPR	8	Unmodified	_LSWWPWPR_					0	0	0		ENST00000406386.7_1_22:38170154-38170496:+|nuORF	ENST00000406386.7_1_22:38170154-38170496:+|nuORF	ENST00000406386.7_1_22:38170154-38170496:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.8219604492188	2	564.292894	1126.57123	0.69428	0.00039178	-3.3344	-0.0018816	-2.6401	-0.0014898	564.2904889507579	84.696	1.2844	84.696	84.595	85.879	0					67	54	2	0	0	0	0.35759	1	20950	20950		9.3474	0	1	186960			12090	6380	7990	8050	16481	16481					0.01301190125195717
LSYDASQWE	9	Unmodified	_LSYDASQWE_					0	0	0		ENSG00000037280|ENST00000261937|FLT4;nc|ENSG00000037280|P35916-1|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;ENST00000507059.5_1_5:180043993-180056331:-|nuORF	ENSG00000037280|ENST00000261937|FLT4	ENSG00000037280|ENST00000261937|FLT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7406005859375	2	549.740554	1097.46655	0.33705	0.00018529	0.25259	0.00013886	0.58964	0.00032415	549.7405183201946	86.637	0.39307	86.664	86.466	86.859	0.027573					55	17	4	0	0	0	0.047633	1	21320	21320		43.858	5.6827	1	1107800			12091	522	7991	8051	16482	16482					-0.0782802093265218
LSYIINLII	9	Unmodified	_LSYIINLII_					0	0	0			REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3342895507812	2	531.333893	1060.65323	0.60168	0.00031969	0.2842	0.00015101	0.88588	0.0004707	531.3340217391017	99.655	0.84721	99.698	99.492	100.34	0.042839					88	52	3	0	0	0	0.01943	1	25249	25249		58.679	0	1	1411100	+		12092	13262	7992	8052	16483	16483					0.12533247693681915
LSYLNLLLL	9	Unmodified	_LSYLNLLLL_					0	0	0			REV__ENST00000480101.1_1_3:142499823-142503920:+|nuORF	REV__ENST00000480101.1_1_3:142499823-142503920:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3341064453125	2	531.333893	1060.65323	0.48315	0.00025672	0.278	0.00014771	0.76115	0.00040443	531.3339520852451	99.744	1.0671	99.744	99.485	100.55	0					90	58	2	0	0	0	0.02293	1	25506	25506		56.177	0	1	830620	+		12093	12078	7993	8053	16484	16484					0.12533247693681915
LSYMDVSRN	9	Unmodified	_LSYMDVSRN_					0	0	0		nc|ENSG00000081913|O60346-2|PHLPP1;ENSG00000081913|ENST00000262719|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7749633789062	2	542.758223	1083.50189	0.3717	0.00020174	0.33368	0.00018111	0.70538	0.00038285	542.7584596404736	78.963	0.13931	78.994	78.936	79.075	0.030159					5	4	2	0	0	0	0.18364	1	18995	18995		20.454	3.5113	1	29218			12094	913	7994	8054	16485	16485					-0.03651681676501539
LSYVLGKLVF	10	Unmodified	_LSYVLGKLVF_					0	0	0			REV__ENST00000399075.6_1_4:120219573-120219687:-|nuORF	REV__ENST00000399075.6_1_4:120219573-120219687:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.816650390625	2	569.847167	1137.67978	0.48148	0.00027437	-0.091273	-5.2012E-05	0.39021	0.00022236	570.348575162104	81.354	0.1657	81.376	81.283	81.449	0.021866					6	5	2	0	0	0	0.31708	1	19719	19719		7.609	3.2797	1	27045	+		12095	11741	7995	8055	16486	16486					0.11644936585003052
LTAFYLHHPI	10	Unmodified	_LTAFYLHHPI_					0	0	0			REV__nc|ENSG00000157426|Q4L235-2|AASDH	REV__nc|ENSG00000157426|Q4L235-2|AASDH	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.57379150390625	3	404.557236	1210.64988	-0.33622	-0.00013602	1.2815	0.00051843	0.94524	0.0003824	404.5578802658096	41.523	0.13496	41.523	41.459	41.594	0					6	4	2	0	0	0	0.31783	1	7769	7769		1.9064	0.1641	1	13603	+		12096	9776	7996	8056	16487	16487					0.052979976396500206
LTALPSHLVPA	11	Unmodified	_LTALPSHLVPA_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.27880859375	2	559.832049	1117.64954	0.42715	0.00023913	-3.8734	-0.0021684	-3.4462	-0.0019293	559.8303837836883	50.957	0.14095	51.027	50.936	51.077	0.069878					7	5	2	0	0	0	0.3105	1	10475	10475		5.7319	1.4026	1	30343			12097	4568	7997	8057	16488	16488					0.09542577919796713
LTATYAFEL	9	Unmodified	_LTATYAFEL_					0	0	0			REV__nc|ENSG00000160685|O15156-2|ZBTB7B	REV__nc|ENSG00000160685|O15156-2|ZBTB7B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7700805664062	2	514.768583	1027.52261	0.35222	0.00018131	2.9816	0.0015349	3.3339	0.0017162	514.7698970933792	90.672	0.39117	90.672	90.467	90.858	0					33	14	3	0	0	0	0.18364	1	22696	22696		20.454	2.3186	1	301720	+		12098	9854	7998	8058	16489	16489					0.009952319747981164
LTAVHDAIL	9	Unmodified	_LTAVHDAIL_					0	0	0		ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7767639160156	2	476.776742	951.538931	-0.072343	-3.4492E-05	0.057079	2.7214E-05	-0.015264	-7.2777E-06	476.77670607533383	49.265	0.47556	49.265	49.032	49.508	0					36	16	3	0	0	0	0.011655	1	10084	10084		64.236	22.142	1	299240			12099	4467	7999	8059	16490	16490					0.06122357931565148
LTAVHDAIL	9	Unmodified	_LTAVHDAIL_					0	0	0		ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.77679443359375	2	476.776742	951.538931	-0.16272	-7.7581E-05	0.30473	0.00014529	0.14201	6.7709E-05	476.7767505459186	49.156	0.5019	49.232	49.035	49.536	0.076607					33	18	3	0	0	0	0.10067	1	9911	9911		32.305	11.852	1	238270			12100	4467	7999	8059	16491	16491					0.06122357931565148
LTDFINEQP	9	Unmodified	_LTDFINEQP_					0	0	0			REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7667236328125	2	538.766571	1075.51859	0.77671	0.00041846	0.19461	0.00010485	0.97132	0.00052332	538.7665880144406	65.902	0.96478	65.902	65.704	66.669	0					52	35	2	0	0	0	0.010235	2	15153	15153;15205		66.457	15.602	1	346090	+		12101	11487	8000	8060	16492;16493	16492					-0.016148575188935865
LTDFINEQP	9	Unmodified	_LTDFINEQP_					0	0	0			REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7671508789062	2	538.766571	1075.51859	0.71517	0.00038531	0.32996	0.00017777	1.0451	0.00056308	538.7664162762461	65.835	0.48203	65.902	65.684	66.166	0.066872					36	17	3	0	0	0	0.020768	2	14993	14993;15060		57.722	4.3847	1	250210	+		12102	11487	8000	8060	16494;16495	16494					-0.016148575188935865
LTDIFFETL	9	Unmodified	_LTDIFFETL_					0	0	0		tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7904663085938	2	549.789515	1097.56448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.33	1	67.33	66.83	67.83	0								0	0	0	0.21527	1	15597	15597		15.847	0	1				12103	13600	8001	8061	16496	16496					0.01959787663327006
LTDIKEPGI	9	Unmodified	_LTDIKEPGI_					0	0	0			REV__ENST00000366583.6_1_1:236689310-236706138:+|nuORF	REV__ENST00000366583.6_1_1:236689310-236706138:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2819519042969	2	493.281857	984.549162	0.14545	7.175E-05	0.10095	4.9795E-05	0.2464	0.00012155	493.2817808046368	48.885	0.70399	48.961	48.78	49.484	0.076607					51	25	4	0	0	0	0.2546	1	9920	9920		12.241	0	1	277940	+		12104	8821	8002	8062	16497	16497					0.056269208661547054
LTDIMWPII	9	Unmodified	_LTDIMWPII_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.30419921875	2	551.304278	1100.594	0.041164	2.2694E-05	0.21662	0.00011942	0.25778	0.00014212	551.3042772656117	26.961	0.43648	27.047	26.887	27.323	0.0867					61	31	3	0	0	0	0.33704	1	3283	3283		1.8442	0	1	49233			12105	722	8003	8063	16498	16498					0.047730284078397744
LTDIMWPII	9	Unmodified	_LTDIMWPII_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	551.304278	1100.594	-0.064903	-3.5781E-05	-0.029694	-1.6371E-05	-0.094597	-5.2152E-05	551.3042427081066	27.104	0.46481	27.104	26.921	27.385	0	0.028098	-0.00011056	NaN	1.8442	57	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43569			12106	722	8003	8063							0.047730284078397744
LTDIMWPII	9	Unmodified	_LTDIMWPII_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	551.304278	1100.594	0.041164	2.2694E-05	0.21662	0.00011942	0.25778	0.00014212	551.3042772656117	26.961	0.43648	27.047	26.887	27.323	0.0867	-0.028098	0.00016102	NaN	1.8442	61	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49233			12107	722	8003	8063							0.047730284078397744
LTDLVPQLS	9	Unmodified	_LTDLVPQLS_					0	0	0			REV__nc|ENSG00000167716|Q562E7-4|WDR81	REV__nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.28192138671875	2	493.281857	984.549162	0.27086	0.00013361	-0.027849	-1.3737E-05	0.24301	0.00011987	493.28173038449114	49.024	0.79176	49.024	48.77	49.562	0					63	27	4	0	0	0	0.24767	1	10087	10087		13.042	0.80181	1	381700	+		12108	10129	8004	8064	16499	16499					0.056269208661547054
LTDVLQRYL	9	Unmodified	_LTDVLQRYL_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.3297119140625	2	560.821681	1119.62881	0.66757	0.00037439	-0.47679	-0.00026739	0.19078	0.00010699	560.8212198508453	47.824	0.36047	47.904	47.726	48.087	0.080029					16	12	2	0	0	0	0.25174	1	9522	9522		7.2892	0	1	71606			12109	4094	8005	8065	16500	16500					0.07377987540144204
LTEDHWIL	8	Unmodified	_LTEDHWIL_					0	0	0		ENST00000372886.5_1_20:43211320-43218439:+|nuORF;ENST00000372891.7_1_20:43211320-43213781:+|nuORF	ENST00000372886.5_1_20:43211320-43218439:+|nuORF	ENST00000372886.5_1_20:43211320-43218439:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7496948242188	2	513.766374	1025.5182	0.35457	0.00018217	1.2858	0.00066058	1.6403	0.00084275	513.7671425649796	47.951	0.63607	47.951	47.763	48.399	0					34	21	2	0	0	0	0.35042	1	9648	9648		19.439	6.9074	1	130760			12110	6220	8006	8066	16501	16501					0.0064576755189591495
LTEHFHLTL	9	Unmodified	_LTEHFHLTL_					0	0	0			REV__ENST00000602865.1_1_1:2282646-2283036:-|nuORF	REV__ENST00000602865.1_1_1:2282646-2283036:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7991943359375	2	555.800749	1109.58694	0.60846	0.00033818	-0.54992	-0.00030564	0.05854	3.2537E-05	555.8002079169256	38.529	0.56108	38.616	38.297	38.858	0.086884					36	20	3	0	0	0	0.27332	1	6694	6694		10.074	2.7847	1	67543	+		12111	12629	8007	8067	16502	16502					0.03653431851603273
LTEKSWLWHC	10	Unmodified	_LTEKSWLWHC_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88214111328125	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.08	1	102.08	101.58	102.58	0								0	0	0	0.33965	1	26179	26179		0.62683	0.063655	1				12112	7205	8008	8068	16503	16503					-0.016068539630396117
LTFESYLIF	9	Unmodified	_LTFESYLIF_					0	0	0			REV__ENST00000366582.7_1_1:236714030-236714195:-|nuORF	REV__ENST00000366582.7_1_1:236714030-236714195:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330322265625	2	566.799883	1131.58521	0.26728	0.0001515	-0.6893	-0.0003907	-0.42202	-0.0002392	566.799540893445	88.611	1.6141	88.611	87.948	89.562	0					96	63	2	0	0	0	0.2298	1	21975	21975		11.64	0.81637	1	173890	+		12113	11548	8009	8069	16504	16504					0.02468378042999575
LTFPSAGTLL	10	Unmodified	_LTFPSAGTLL_					0	0	0			REV__ENST00000532885.5_1_11:64128013-64135652:+|nuORF	REV__ENST00000532885.5_1_11:64128013-64135652:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2814025878906	2	510.292225	1018.5699	0.27701	0.00014136	-2.232	-0.001139	-1.955	-0.00099761	510.79219675656105	83.755	0.62308	83.777	83.414	84.037	0.021751					48	21	3	0	0	0	0.41688	1	20510	20510		10.074	0.6908	1	140300	+		12114	9880	8010	8070	16505	16505					0.061355112458159056
LTGVTFAFLF	10	Unmodified	_LTGVTFAFLF_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.310791015625	2	558.310418	1114.60628	0.46872	0.00026169	-0.05725	-3.1963E-05	0.41147	0.00022973	558.3103484099859	87.731	2.0181	87.761	87.582	89.6	0.030037					221	77	5	0	0	0	0.16299	1	21851	21851		37.974	5.1883	1	6563200			12115	3291	8011	8071	16506	16506					0.05356388142513424
LTHAYAAR	8	Unmodified	_LTHAYAAR_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.7455139160156	2	451.745776	901.477	0.31633	0.0001429	-0.30432	-0.00013748	0.012013	5.4268E-06	451.7454801347969	49.701	0.54237	49.701	49.508	50.05	0					37	18	3	0	0	0	0.53423	1	10241	10241		5.2307	0	1	161150	+		12116	13245	8012	8072	16507	16507					0.022320513030763323
LTHRALFLAM	10	Unmodified	_LTHRALFLAM_					0	0	0			REV__sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	REV__sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.814453125	2	586.834069	1171.65358	0.62077	0.00036429	0.034595	2.0302E-05	0.65537	0.00038459	586.8336432519089	86.705	0.82196	86.733	86.037	86.859	0.02758					72	33	3	0	0	0	0.31783	1	21274	21274		3.9444	2.2918	1	463760	+		12117	13005	8013	8073	16508	16508					0.07462344141845279
LTHYLLPY	8	Unmodified	_LTHYLLPY_					0	0	0		ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.28125	2	510.28166	1018.54877	0.42127	0.00021497	-0.56288	-0.00028723	-0.14162	-7.2264E-05	510.2812690480042	57.732	0.70458	57.732	57.408	58.112	0					49	24	3	0	0	0	0.41225	2	12672	12672;12722		24.674	4.2594	1	177470			12118	4521	8014	8074	16509;16510	16509					0.040235459369455384
LTHYLLPY	8	Unmodified	_LTHYLLPY_					0	0	0		ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.292236328125	2	510.28166	1018.54877	0.20667	0.00010546	-1.032	-0.00052659	-0.82529	-0.00042113	510.28175564395906	56.854	0.702	56.854	56.627	57.329	0					51	24	4	0	0	0	0.34292	1	12395	12395		24.674	0	1	168130			12119	4521	8014	8074	16511	16511					0.040235459369455384
LTHYLLPY	8	Unmodified	_LTHYLLPY_					0	0	0		ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2816162109375	2	510.28166	1018.54877	0.31405	0.00016026	-0.39898	-0.00020359	-0.084926	-4.3336E-05	510.281446459744	57.702	0.69486	57.77	57.413	58.108	0.068371					43	25	2	0	0	0	0.49441	1	12554	12554		13.508	1.2672	1	209790			12120	4521	8014	8074	16512	16512					0.040235459369455384
LTHYLLPY	8	Unmodified	_LTHYLLPY_					0	0	0		ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.292236328125	2	510.28166	1018.54877	0.32506	0.00016587	-0.66381	-0.00033873	-0.33875	-0.00017286	510.2815996856198	56.826	0.63517	56.893	56.683	57.318	0.066448					35	22	3	0	0	0	0.35042	1	12251	12251		19.439	1.2926	1	175740			12121	4521	8014	8074	16513	16513					0.040235459369455384
LTIDHVPIW	9	Unmodified	_LTIDHVPIW_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7599487304688	2	547.305667	1092.59678	0.48303	0.00026436	-1.2381	-0.00067759	-0.75503	-0.00041323	547.3054135904626	64.277	0.49446	64.348	64.115	64.61	0.071014					24	17	2	0	0	0	0.22289	1	14552	14552		4.3292	0	1	124920			12122	2670	8015	8075	16514	16514					0.05418619857005069
LTIMIFAPL	9	Unmodified	_LTIMIFAPL_					0	0	0			REV__tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	REV__tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.24871826171875	2	509.803914	1017.59328	0.43744	0.00022301	-0.15175	-7.7361E-05	0.28569	0.00014565	509.80374371516564	77.978	0.43457	78.013	77.708	78.142	0.034485					19	14	2	0	0	0	0.25579	1	18623	18623		4.3292	0.38484	1	87719	+		12123	13269	8016	8076	16515	16515					0.08518233758786664
LTIPKSCYPCE	11	Unmodified	_LTIPKSCYPCE_					0	0	0			REV__ENSG00000115392|ENST00000233741|FANCL	REV__ENSG00000115392|ENST00000233741|FANCL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2990112304688	2	627.298867	1252.58318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.556	1	14.556	14.056	15.056	0								0	0	0	0.33908	1	392	392		1.0715	0.61312	1		+		12124	8783	8017	8077	16516	16516					-0.03300742028750392
LTIQSPNPQ	9	Unmodified	_LTIQSPNPQ_					0	0	0		ENST00000590320.2_1_19:10333357-10333468:-|nuORF	ENST00000590320.2_1_19:10333357-10333468:-|nuORF	ENST00000590320.2_1_19:10333357-10333468:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7687683105469	2	499.269281	996.52401	0.46392	0.00023162	-1.2118	-0.00060504	-0.74793	-0.00037342	499.7689209774908	68.483	0.77562	68.483	68.158	68.934	0					75	28	4	0	0	0	0.23216	1	15922	15922		14.838	1.3304	1	404050			12125	7261	8018	8078	16517	16517					0.025608660635725755
LTIYDSSFLI	10	Unmodified	_LTIYDSSFLI_					0	0	0			REV__SPPL2C|p.E209Kfs*47|1|0.36|ENSG00000185294|chr17:45845531-45845531|G/-|frameshift_variant	REV__SPPL2C|p.E209Kfs*47|1|0.36|ENSG00000185294|chr17:45845531-45845531|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3158569335938	2	586.315897	1170.61724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.25	1	101.29	100.79	101.79	0.042656								0	0	0	0.33681	1	25771	25771		3.9444	0.3479	1		+		12126	10666	8019	8079	16518	16518					0.038757457261453965
LTKEWFLL	8	Unmodified	_LTKEWFLL_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3053588867188	2	525.305136	1048.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.863	1	66.928	66.428	67.428	0.065071								0	0	0	0.38822	1	15304	15304		5.2307	0.47466	1				12127	4078	8020	8080	16519	16519					0.07336405488103992
LTKRREKSL	9	Unmodified	_LTKRREKSL_					0	0	0			REV__nc|ENSG00000145703|Q13576-3|IQGAP2	REV__nc|ENSG00000145703|Q13576-3|IQGAP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8544311523438	2	565.853847	1129.69314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.55	1	112.55	112.05	113.05	0								0	0	0	0.26267	1	28834	28834		6.7232	0	1		+		12128	9524	8021	8081	16520	16520					0.13348187416954715
LTLDSFHPI	9	Unmodified	_LTLDSFHPI_					0	0	0			REV__ENSG00000143171|ENST00000359842|RXRG	REV__ENSG00000143171|ENST00000359842|RXRG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.328125	2	521.782025	1041.5495	0.36907	0.00019257	-0.37062	-0.00019338	-0.0015471	-8.0725E-07	521.7817119605644	78.377	0.51155	78.407	78.2	78.712	0.030159					34	17	3	0	0	0	0.22912	1	18846	18846		18.146	5.9057	1	277520	+		12129	9452	8022	8082	16521	16521					0.030383405859993218
LTLEHPFN	8	Unmodified	_LTLEHPFN_					0	0	0		tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.76361083984375	2	485.753267	969.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.633	1	51.633	51.133	52.133	0								0	0	0	0.38822	1	10809	10809		5.2307	0	1				12130	13571	8023	8083	16522	16522					0.006014983804220719
LTLLIHQQA	9	Unmodified	_LTLLIHQQA_					0	0	0		ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENST00000570149.1_1_16:89628679-89629447:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.8106689453125	2	518.811116	1035.60768	0.55884	0.00028993	-1.8551	-0.00096242	-1.2962	-0.00067249	518.8103541763065	92.725	1.3806	92.762	92.105	93.486	0.036552					127	53	4	0	0	0	0.21398	1	23165	23165		16.942	6.1184	1	7566100			12131	7193	8024	8084	16523	16523					0.09130022231283874
LTLLIHQQA	9	Unmodified	_LTLLIHQQA_					0	0	0		ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENST00000570149.1_1_16:89628679-89629447:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	518.811116	1035.60768	0.62601	0.00032478	-1.6355	-0.00084852	-1.0095	-0.00052374	518.8102710140428	92.729	1.6054	92.729	92.164	93.77	0	-0.016338	2.6996E-05	NaN	16.942	133	61	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6382100			12132	7193	8024	8084							0.09130022231283874
LTLLKTNL	8	Unmodified	_LTLLKTNL_					0	0	0		ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000354485.5_1_9:676972-730286:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.29620361328125	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.483	1	89.483	88.983	89.983	0								0	0	0	0.38822	1	22345	22345		5.2307	0	1				12133	1543	8025	8085	16524	16524					0.11936118971038923
LTLLLVAYM	9	Unmodified	_LTLLLVAYM_					0	0	0		ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.810546875	2	518.809196	1035.60384	0.55884	0.00028993	1.8456	0.00095749	2.4044	0.0012474	518.8103541763065	92.725	1.3806	92.762	92.105	93.486	0.036552					127	53	4	0	0	0	0.31136	1	23207	23207		5.2307	0	1	7566100			12134	4762	8026	8086	16525	16525					0.08746216413192087
LTLPGLLREQR	11	Unmodified	_LTLPGLLREQR_					0	0	0		ENST00000585077.1_1_17:80397907-80398237:+|nuORF	ENST00000585077.1_1_17:80397907-80398237:+|nuORF	ENST00000585077.1_1_17:80397907-80398237:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.8958740234375	2	648.393336	1294.77212	0.22945	0.00014878	-0.42264	-0.00027404	-0.19319	-0.00012526	648.3931465879183	102.75	0.6739	102.75	102.54	103.21	0					68	43	2	0	0	0	0.40738	1	26413	26413		5.7319	0	1	206020			12135	7235	8027	8087	16526	16526					0.13652414651210165
LTLSCRISD	9	Unmodified	_LTLSCRISD_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.27423095703125	2	504.263142	1006.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.836	1	76.836	76.336	77.336	0								0	0	0	0.24643	1	18497	18497		10.074	1.4806	1				12136	74	8028	8088	16527	16527					0.00873506328878193
LTLSPSPFL	9	Unmodified	_LTLSPSPFL_					0	0	0			REV__ENST00000593362.1_1_19:49912247-49918391:+|nuORF	REV__ENST00000593362.1_1_19:49912247-49918391:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2931823730469	2	487.781493	973.548434	0.24226	0.00011817	0.39049	0.00019047	0.63275	0.00030864	487.7816934921266	85.758	0.35259	85.758	85.579	85.931	0					24	14	2	0	0	0	0.2446	1	21231	21231		11.64	0	1	143520	+		12137	12595	8029	8089	16528	16528					0.06060126217107609
LTLSRIRPWFK	11	Unmodified	_LTLSRIRPWFK_					0	0	0			REV__ENST00000379979.8_1_5:95150348-95150648:-|nuORF	REV__ENST00000379979.8_1_5:95150348-95150648:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.28369140625	3	472.95399	1415.84014	0.0048548	2.2961E-06	-3.1251	-0.001478	-3.1203	-0.0014757	472.9524643528709	95.687	0.28963	95.687	95.491	95.78	0					17	13	2	0	0	0	0.31098	1	24252	24252		1.1098	0.6038	1	98056	+		12138	11665	8030	8090	16529	16529					0.14885284301885804
LTLTHSKLQRA	11	Unmodified	_LTLTHSKLQRA_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9053344726562	2	634.377686	1266.74082	0.24919	0.00015808	-1.9292	-0.0012239	-1.68	-0.0010658	634.8774243641154	108.27	0.25838	108.29	108.24	108.49	0.022224					51	35	2	0	0	0	0.3108	1	27741	27741		2.9952	0.26005	1	3634400			12139	296	8031	8091	16530	16530					0.11811841617145546
LTMEPIVL	8	Unmodified	_LTMEPIVL_					0	0	0		MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant;ENSG00000275023|ENST00000621332|MLLT6	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.2646484375	2	458.264622	914.514691	0.53502	0.00024518	-0.090317	-4.1389E-05	0.4447	0.00020379	458.26455789359426	85.368	0.58252	85.392	85.211	85.794	0.023125					31	23	2	0	0	0	0.52924	1	20977	20977		8.5933	0	1	85907			12140	5744	8032	8092	16531	16531					0.05401381453668819
LTNGFDVF	8	Unmodified	_LTNGFDVF_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7269592285156	2	456.726718	911.438883	0.095033	4.3404E-05	0.2306	0.00010532	0.32563	0.00014873	456.7267948599392	59.453	0.49732	59.525	59.301	59.798	0.072338					30	19	2	0	0	0	0.4772	1	13067	13067		15.847	0	1	201980			12141	1536	8033	8093	16532	16532					-0.02037879402234921
LTNGFDVF	8	Unmodified	_LTNGFDVF_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	456.726718	911.438883	0.32682	0.00014927	0.079877	3.6482E-05	0.4067	0.00018575	456.7267349422037	59.504	0.41105	59.504	59.308	59.719	0	-0.010573	-6.7259E-05	NaN	15.847	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207580			12142	1536	8033	8093							-0.02037879402234921
LTNNDSSS	8	Unmodified	_LTNNDSSS_					0	0	0			REV__nc|ENSG00000144847|Q5DX21-3|IGSF11	REV__nc|ENSG00000144847|Q5DX21-3|IGSF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.1834716796875	2	419.182872	836.35119	0.96964	0.00040645	0.50142	0.00021019	1.4711	0.00061664	419.18299350251226	84.588	1.0189	84.588	84.441	85.459	0					96	44	4	0	0	0	0.53817	1	20847	20847		2.5775	0	1	2039300	+		12143	9507	8034	8094	16533	16533					-0.07353125063650623
LTPASEPEAL	10	Unmodified	_LTPASEPEAL_					0	0	0			REV__ENSG00000196872|ENST00000397899|CRACDL	REV__ENSG00000196872|ENST00000397899|CRACDL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2693481445312	2	514.268947	1026.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.007	1	65.007	64.507	65.507	0								0	0	0	0.33215	1	14887	14887		9.3831	0	1		+		12144	10836	8035	8095	16534	16534					0.011140266238498953
LTPGLSWLL	9	Unmodified	_LTPGLSWLL_					0	0	0		nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2971496582031	2	500.29731	998.580068	0.58291	0.00029163	-0.026335	-1.3175E-05	0.55658	0.00027845	500.29715662022414	98.349	0.29328	98.349	98.155	98.448	0					22	14	2	0	0	0	0.23216	1	25044	25044		14.838	0	1	111410			12145	3342	8036	8096	16535	16535					0.08072118971040254
LTPGLSWLL	9	Unmodified	_LTPGLSWLL_					0	0	0		nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	500.29731	998.580068	0.57038	0.00028536	-0.10854	-5.4304E-05	0.46184	0.00023106	500.29715039075296	98.254	0.30704	98.296	98.124	98.431	0.041931	-0.026493	-2.6927E-05	NaN	14.838	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138320			12146	3342	8036	8096							0.08072118971040254
LTPILLLINLF	11	Unmodified	_LTPILLLINLF_					0	0	0			REV__ENSG00000164002|ENST00000415550|EXO5	REV__ENSG00000164002|ENST00000415550|EXO5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.412109375	2	635.412675	1268.8108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.217	1	51.286	50.786	51.786	0.069874								0	0	0	0.34125	1	10549	10549		0.30703	0	1		+		12147	9971	8037	8097	16536	16536					0.18714327233033146
LTPKSTPV	8	Unmodified	_LTPKSTPV_					0	0	0		nc|ENSG00000101057|P10244-2|MYBL2;ENSG00000101057|ENST00000217026|MYBL2	nc|ENSG00000101057|P10244-2|MYBL2	nc|ENSG00000101057|P10244-2|MYBL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.7513732910156	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.212	1	72.212	71.712	72.712	0								0	0	0	0.38822	1	17080	17080		2.3027	0	1				12148	1232	8038	8098	16537	16537					0.06383284011519663
LTPPLVLP	8	Unmodified	_LTPPLVLP_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.2743835449219	2	425.275847	848.537141	0.11769	5.0049E-05	-2.059	-0.00087566	-1.9413	-0.00082561	425.27485190708717	109.53	0.21738	109.53	109.44	109.66	0					37	19	4	0	0	0	0.3576	1	28179	28179		0	0	1	4531500			12149	5153	8039	8099	16538	16538					0.10681348913601596
LTQEEIEDSL	10	Unmodified	_LTQEEIEDSL_					0	0	0			REV__ENSG00000151418|ENST00000367382|ATP6V1G3	REV__ENSG00000151418|ENST00000367382|ATP6V1G3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7879028320312	2	588.785158	1175.55576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.443	1	84.466	83.966	84.966	0.023125								0	0	0	0.21884	1	20655	20655		27.629	2.6378	1		+		12150	9645	8040	8100	16539	16539					-0.024992307638058264
LTQKKPKTKF	10	Unmodified	_LTQKKPKTKF_					0	0	0			REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.88134765625	2	609.882073	1217.74959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.28	1	112.28	111.78	112.78	0								0	0	0	0.33762	1	28751	28751		2.9952	0	1		+		12151	13043	8041	8101	16540	16540					0.1494281525358474
LTRDGHLLP	9	Unmodified	_LTRDGHLLP_					0	0	0		nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2920227050781	2	511.293091	1020.57163	-0.36245	-0.00018532	-0.60273	-0.00030817	-0.96518	-0.00049349	511.292740288758	41.398	0.8072	41.487	41.265	42.072	0.089767					111	31	5	0	0	0	0.30005	1	7647	7647		6.7232	1.4925	1	589460			12152	7604	8042	8102	16541	16541					0.06216565054421608
LTRQVPYPA	9	Unmodified	_LTRQVPYPA_					0	0	0			REV__ENST00000558530.1_1_20:35238119-35240623:+|nuORF	REV__ENST00000558530.1_1_20:35238119-35240623:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7957763671875	2	522.795466	1043.57638	0.5371	0.00028079	-0.27437	-0.00014344	0.26273	0.00013735	522.7953144178474	55.053	1.4213	55.053	54.614	56.035	0					141	51	4	0	0	0	0.31496	1	11999	11999		4.756	0	1	5065600	+		12153	12471	8043	8103	16542	16542					0.056334491971938405
LTRRLPCWVPL	11	Unmodified	_LTRRLPCWVPL_					0	0	0		ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.9326171875	3	451.932309	1352.7751	0.68319	0.00030876	0.21646	9.7827E-05	0.89966	0.00040658	451.93230680483066	92.433	1.62	92.433	91.815	93.435	0					189	61	4	0	0	0	0.41309	1	23241	23241		1.3296	0.11481	1	468520			12154	6813	8044	8104	16543	16543					0.11281966504361662
LTRRRSCSPC	10	Unmodified	_LTRRRSCSPC_					0	0	0		ENST00000373064.9_3_9:130863495-130864671:+|nuORF;ENST00000373066.9_1_9:130863495-130864671:+|nuORF	ENST00000373064.9_3_9:130863495-130864671:+|nuORF	ENST00000373064.9_3_9:130863495-130864671:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.79443359375	2	589.797691	1177.58083	0.88369	0.0005212	-2.8278	-0.0016678	-1.9441	-0.0011466	589.7950794402947	84.449	0.47088	84.449	84.367	84.838	0					63	30	3	0	0	0	0.14584	1	20816	20816		39.95	3.8227	1	1129500			12155	6222	8045	8105	16544	16544					-0.0008573292320761539
LTRYRPQFP	9	Unmodified	_LTRYRPQFP_					0	0	0			REV__ENST00000326199.12_1_6:34392994-34393855:-|nuORF	REV__ENST00000326199.12_1_6:34392994-34393855:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3282470703125	2	589.327465	1176.64038	0.48021	0.000283	-1.1853	-0.00069851	-0.70506	-0.00041551	589.326746011569	52.316	0.56869	52.383	52.203	52.772	0.067169					46	22	3	0	0	0	0.32112	1	10949	10949		3.9444	0	1	276280	+		12156	11409	8046	8106	16545	16545					0.05912229354112242
LTSDEEGEPS	10	Unmodified	_LTSDEEGEPS_					0	0	0		nc|ENSG00000166477|Q8WVC0-2|LEO1;ENSG00000166477|ENST00000299601|LEO1	nc|ENSG00000166477|Q8WVC0-2|LEO1	nc|ENSG00000166477|Q8WVC0-2|LEO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.318603515625	2	532.224933	1062.43531	0.45953	0.00024457	-0.44947	-0.00023922	0.01006	5.3544E-06	532.2253345055047	71.271	0.5656	71.271	70.937	71.502	0					40	18	3	0	0	0	0.31496	1	16774	16774		13.906	2.2658	1	188640			12157	4160	8047	8107	16546	16546					-0.09340638757430497
LTSLPVVLL	9	Unmodified	_LTSLPVVLL_					0	0	0			REV__nc|ENSG00000153922|O14646-2|CHD1	REV__nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.8150634765625	2	477.815336	953.616119	0.052371	2.5024E-05	0.20724	9.9021E-05	0.25961	0.00012404	477.81525868225566	94.969	0.44881	94.969	94.779	95.228	0					25	19	2	0	0	0	0.17247	1	24028	24028		21.747	0	1	83416	+		12158	9702	8048	8108	16547	16547					0.13745576147903193
LTSLPVVLL	9	Unmodified	_LTSLPVVLL_					0	0	0			REV__nc|ENSG00000153922|O14646-2|CHD1	REV__nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.8150939941406	2	477.815336	953.616119	-0.027382	-1.3084E-05	0.1815	8.6725E-05	0.15412	7.3641E-05	477.81530129855446	94.853	0.37984	94.891	94.792	95.172	0.038574					22	15	2	0	0	0	0.17247	1	23842	23842		21.747	0	1	63473	+		12159	9702	8048	8108	16548	16548					0.13745576147903193
LTSLPVVLL	9	Unmodified	_LTSLPVVLL_					0	0	0			REV__nc|ENSG00000153922|O14646-2|CHD1	REV__nc|ENSG00000153922|O14646-2|CHD1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	477.815336	953.616119	0.052371	2.5024E-05	0.20724	9.9021E-05	0.25961	0.00012404	477.81525868225566	94.969	0.44881	94.969	94.779	95.228	0	0.038891	1.4345E-05	NaN	21.747	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83416	+		12160	9702	8048	8108							0.13745576147903193
LTSLPVVLL	9	Unmodified	_LTSLPVVLL_					0	0	0			REV__nc|ENSG00000153922|O14646-2|CHD1	REV__nc|ENSG00000153922|O14646-2|CHD1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	477.815336	953.616119	-0.027382	-1.3084E-05	0.1815	8.6725E-05	0.15412	7.3641E-05	477.81530129855446	94.853	0.37984	94.891	94.792	95.172	0.038574	-0.038891	-1.0247E-05	NaN	21.747	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63473	+		12161	9702	8048	8108							0.13745576147903193
LTSLRKLWLMH	11	Unmodified	_LTSLRKLWLMH_					0	0	0		ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.6080017089844	3	466.607713	1396.80131	0.43635	0.0002036	-0.48264	-0.0002252	-0.046292	-2.16E-05	466.6070692545077	93.913	1.4169	93.913	93.298	94.715	0					144	65	3	0	0	0	0.41359	1	23598	23598		1.2148	0.2893	1	609330			12162	2529	8049	8109	16549	16549					0.11878235675862925
LTSMSLCTLF	10	Unmodified	_LTSMSLCTLF_					0	0	0			REV__ENST00000604822.1_1_4:153268030-153273825:-|nuORF	REV__ENST00000604822.1_1_4:153268030-153273825:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2666625976562	2	558.277403	1114.54025	0.57317	0.00031999	3.8502	0.0021495	4.4234	0.0024695	558.2777235859567	88.476	0.12251	88.506	88.434	88.557	0.030037					6	4	2	0	0	0	0.40987	1	21881	21881		10.824	2.2306	1	19401	+		12163	12636	8050	8110	16550	16550					-0.012435120861937321
LTSQFLPYF	9	Unmodified	_LTSQFLPYF_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2830200195312	2	558.292225	1114.5699	0.53188	0.00029694	0.55328	0.00030889	1.0852	0.00060583	558.2921972371809	86.32	0.58141	86.345	86.088	86.67	0.025169					36	22	3	0	0	0	0.10833	1	21230	21230		30.637	3.0077	1	307770			12164	3032	8051	8111	16551	16551					0.017195112458011863
LTTIDQEAKS	10	Unmodified	_LTTIDQEAKS_					0	0	0			REV__nc|ENSG00000093167|Q9Y608-3|LRRFIP2	REV__nc|ENSG00000093167|Q9Y608-3|LRRFIP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3040161132812	2	553.290411	1104.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.02	1	41.02	40.52	41.52	0								0	0	0	0.33215	1	7599	7599		9.3831	1.473	1		+		12165	8333	8052	8112	16552	16552					0.018167966812825398
LTTQDSSPAP	10	Unmodified	_LTTQDSSPAP_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2822570800781	2	508.748379	1015.4822	0.028752	1.4628E-05	1.1026	0.00056096	1.1314	0.00057559	508.7487984657975	21.801	0.34481	21.902	21.777	22.122	0.10178					60	38	2	0	0	0	0.31783	1	1890	1890		3.9444	0	1	43485	+		12166	12994	8053	8113	16553	16553					-0.0249173441561652
LTTTNVVK	8	Unmodified	_LTTTNVVK_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.2625732421875	2	438.263468	874.512382	-0.42206	-0.00018497	-0.37966	-0.00016639	-0.80173	-0.00035137	438.26317430251976	41.878	0.92872	41.878	41.291	42.22	0					48	33	2	0	0	0	0.53858	1	7840	7840		2.3027	1.6124	1	53993	+		12167	8203	8054	8114	16554	16554					0.07010669040244011
LTTTRRAVT	9	Unmodified	_LTTTRRAVT_					0	0	0		ENST00000377238.2_1_10:20332341-20568745:+|nuORF;ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-3|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2	ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENST00000377238.2_1_10:20332341-20568745:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8039245605469	2	509.803823	1017.59309	0.75821	0.00038654	-0.2462	-0.00012552	0.512	0.00026102	509.803620416363	80.911	3.0319	80.911	79.958	82.99	0					316	105	4	0	0	0	0.3182	1	19691	19691		4.3292	0	1	1350800			12168	2127	8055	8115	16555	16555					0.08499950083125896
LTTTRRAVT	9	Unmodified	_LTTTRRAVT_					0	0	0		ENST00000377238.2_1_10:20332341-20568745:+|nuORF;ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-3|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2	ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENST00000377238.2_1_10:20332341-20568745:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.803955078125	2	509.803823	1017.59309	0.53124	0.00027083	-0.055093	-2.8087E-05	0.47615	0.00024274	509.8037313893562	80.9	2.9942	80.923	80.075	83.069	0.023605					311	107	4	0	0	0	0.3182	1	19518	19518		4.3292	0	1	2164500			12169	2127	8055	8115	16556	16556					0.08499950083125896
LTTVRTYLGH	10	Unmodified	_LTTVRTYLGH_					0	0	0			REV__ENST00000426776.5_1_12:46123676-46169876:+|nuORF	REV__ENST00000426776.5_1_12:46123676-46169876:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8253173828125	2	580.824755	1159.63496	0.30514	0.00017723	0.31426	0.00018253	0.6194	0.00035976	580.8249786611979	49.754	0.46196	49.754	49.534	49.996	0					31	15	3	0	0	0	0.44496	1	10232	10232		5.7319	0.43497	1	111300	+		12170	7719	8056	8116	16557	16557					0.06152505771660799
LTVIKKLKVF	10	Unmodified	_LTVIKKLKVF_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14;REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.9057006835938	2	594.907559	1187.80057	-0.10287	-6.1201E-05	-2.41	-0.0014337	-2.5129	-0.0014949	594.9061798099902	112.43	0.03904	112.43	112.42	112.46	0					5	3	2	0	0	0	0.47345	1	28802	28802		0.35063	0	1	252140	+		12171	10685;12861	8057	8117	16558	16558					0.2141776429843958
LTVIKKLKVF	10	Unmodified	_LTVIKKLKVF_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14;REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.9063110351562	2	594.907559	1187.80057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.24	1	112.24	111.74	112.74	0								0	0	0	0.33988	1	28738	28738		0.35063	0	1		+		12172	10685;12861	8057	8117	16559	16559					0.2141776429843958
LTVIKKLKVF	10	Unmodified	_LTVIKKLKVF_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14;REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.90625	2	594.907559	1187.80057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.23	1	112.25	111.75	112.75	0.014595								0	0	0	0.33988	1	28622	28622		0.35063	0	1		+		12173	10685;12861	8057	8117	16560	16560					0.2141776429843958
LTVTPPNLV	9	Unmodified	_LTVTPPNLV_					0	0	0			REV__nc|ENSG00000183853|Q96J84-3|KIRREL1	REV__nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7711486816406	2	477.286943	952.559333	-0.70751	-0.00033768	-0.1089	-5.1978E-05	-0.81641	-0.00038966	477.2868509140638	41.175	0.4654	41.175	40.967	41.433	0					24	16	2	0	0	0	0.29105	1	7678	7678		7.9102	0	1	38990	+		12174	12859	8058	8118	16561	16561					0.08115528591360999
LTWMGKMRL	9	Unmodified	_LTWMGKMRL_					0	0	0			REV__ENST00000419165.5_1_X:103216937-103217189:+|nuORF	REV__ENST00000419165.5_1_X:103216937-103217189:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3081665039062	2	568.309372	1134.60419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.93	1	107.95	107.45	108.45	0.022224								0	0	0	0.27427	1	27637	27637		4.3292	1.334	1		+		12175	11810	8059	8119	16562	16562					0.042273128614169764
LTYLLTPY	8	Unmodified	_LTYLLTPY_					0	0	0			REV__nc|ENSG00000110536|Q8WUK0-2|PTPMT1	REV__nc|ENSG00000110536|Q8WUK0-2|PTPMT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.70452880859375	2	492.276044	982.537535	0.19845	9.7695E-05	-2.0134	-0.00099116	-1.815	-0.00089347	492.274912843576	36.015	0.35852	36.015	35.872	36.231	0					23	13	2	0	0	0	0.35759	1	6117	6117		9.3474	0	1	27816	+		12176	8670	8060	8120	16563	16563					0.04556723842802057
LVAASCLEIVL	11	Unmodified	_LVAASCLEIVL_					0	0	0		ENSG00000142484|ENST00000270560|TM4SF5	ENSG00000142484|ENST00000270560|TM4SF5	ENSG00000142484|ENST00000270560|TM4SF5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8268432617188	2	565.828117	1129.64168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.572	1	89.604	89.104	90.104	0.032257								0	0	0	0.2709	1	22214	22214		18.146	5.1039	1				12177	3104	8061	8121	16564	16564					0.08204682607993163
LVAHERHER	9	Unmodified	_LVAHERHER_					0	0	0			REV__nc|ENSG00000146054|Q9C029-1|TRIM7	REV__nc|ENSG00000146054|Q9C029-1|TRIM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.3104248046875	2	573.809971	1145.60539	0.07489	4.2972E-05	-0.7566	-0.00043415	-0.68171	-0.00039117	573.8096296642567	21.035	0.28012	21.134	20.948	21.229	0.099499					35	31	2	0	0	0	0.34646	1	1645	1645		0.6015	0	1	13361	+		12178	9533	8062	8122	16565	16565					0.03840986546174463
LVAHTTLTFS	10	Unmodified	_LVAHTTLTFS_					0	0	0		ENSG00000172459|ENST00000624596|OR5AR1	ENSG00000172459|ENST00000624596|OR5AR1	ENSG00000172459|ENST00000624596|OR5AR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8218383789062	2	545.300581	1088.58661	0.39181	0.00021365	3.9644	0.0021618	4.3562	0.0023755	545.3026502393751	68.112	0.40356	68.112	67.973	68.377	0					23	14	2	0	0	0	0.31747	1	15900	15900		5.7319	1.7875	1	155360			12179	4498	8063	8123	16566	16566					0.0458601213174461
LVAHTTLTFS	10	Unmodified	_LVAHTTLTFS_					0	0	0		ENSG00000172459|ENST00000624596|OR5AR1	ENSG00000172459|ENST00000624596|OR5AR1	ENSG00000172459|ENST00000624596|OR5AR1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.300581	1088.58661	0.50557	0.00027569	4.1157	0.0022443	4.6212	0.00252	545.3027441485923	68.113	0.39101	68.177	67.992	68.383	0.063507	0.032567	5.2333E-05	NaN	5.7319	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96633			12180	4498	8063	8123							0.0458601213174461
LVCDEIYNIK	10	Unmodified	_LVCDEIYNIK_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.312744140625	2	605.312832	1208.61111	0.452	0.0002736	0.50418	0.00030518	0.95618	0.00057879	605.3130884337052	52.683	0.74516	52.683	52.368	53.113	0					46	26	2	0	0	0	0.43214	1	11210	11210		8.1555	0	1	133130			12181	2410	8064	8124	16567	16567					0.015149042229722909
LVCLISDFYP	10	Unmodified	_LVCLISDFYP_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5;CON__Q1RMN8	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.248291015625	2	585.299193	1168.58383	0.80447	0.00047086	-2.1486	-0.0012576	-1.3441	-0.00078673	585.8002199688746	64.532	0.55782	64.601	64.374	64.931	0.068916					32	20	2	0	0	0	0.31512	1	14565	14565		12.532	0.89125	1	250090		+	12182	7596	8065	8125	16568	16568					0.006284206825966976
LVCMVSSLY	9	Unmodified	_LVCMVSSLY_					0	0	0			REV__ENSG00000179826|ENST00000621697|MRGPRX3	REV__ENSG00000179826|ENST00000621697|MRGPRX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.3031311035156	2	507.753564	1013.49257	0.32656	0.00016581	-0.74036	-0.00037592	-0.4138	-0.00021011	507.75313311881433	55.955	0.25262	55.955	55.782	56.035	0					12	8	2	0	0	0	0.21515	1	12121	12121		19.439	7.7987	1	70850	+		12183	10486	8066	8126	16569	16569					-0.013631662863872407
LVDIQLDH	8	Unmodified	_LVDIQLDH_					0	0	0		nc|ENSG00000170962|Q9GZP0-2|PDGFD;ENSG00000170962|ENST00000393158|PDGFD	nc|ENSG00000170962|Q9GZP0-2|PDGFD	nc|ENSG00000170962|Q9GZP0-2|PDGFD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7579040527344	2	476.758549	951.502546	-0.64082	-0.00030552	-0.38977	-0.00018583	-1.0306	-0.00049134	476.7582585055307	41.914	0.48005	42.003	41.79	42.27	0.089764					22	18	2	0	0	0	0.46914	1	7748	7748		16.942	0	1	63832			12184	4422	8067	8127	16570	16570					0.024854810348415413
LVDRVPTL	8	Unmodified	_LVDRVPTL_					0	0	0		RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant;ENSG00000265203|ENST00000584701|RBP3	RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7791748046875	2	456.779285	911.544017	-0.018246	-8.3343E-06	-0.22974	-0.00010494	-0.24799	-0.00011327	456.77905194337626	43.892	0.72715	43.892	43.691	44.418	0					36	24	2	0	0	0	0.32361	2	8453	8453;8502		32.786	0	1	151950			12185	5726	8068	8128	16571;16572	16571					0.08470661794183343
LVDRVPTL	8	Unmodified	_LVDRVPTL_					0	0	0		RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant;ENSG00000265203|ENST00000584701|RBP3	RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.779296875	2	456.779285	911.544017	-0.097275	-4.4433E-05	0.038667	1.7662E-05	-0.058608	-2.6771E-05	456.7792353990323	43.789	0.62214	43.878	43.713	44.335	0.088924					30	21	2	0	0	0	0.18247	1	8315	8315		43.772	0	1	134980			12186	5726	8068	8128	16573	16573					0.08470661794183343
LVEGAYECVF	10	Unmodified	_LVEGAYECVF_					0	0	0			REV__nc|ENSG00000170364|Q53H47-2|SETMAR	REV__nc|ENSG00000170364|Q53H47-2|SETMAR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8269653320312	2	565.26535	1128.51615	0.26893	0.00015202	-0.69166	-0.00039097	-0.42273	-0.00023895	565.7668721467415	88.958	0.61799	88.958	88.626	89.244	0					39	25	2	0	0	0	0.31551	1	22242	22242		11.64	3.7301	1	70553	+		12187	10209	8069	8129	16574	16574					-0.0429702924823232
LVEMCQYVF	9	Unmodified	_LVEMCQYVF_					0	0	0			REV__ENSG00000178567|ENST00000322716|EPM2AIP1	REV__ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.826904296875	2	566.264296	1130.51404	0.13132	7.4364E-05	-3.9255	-0.0022229	-3.7941	-0.0021485	566.2629955221487	89.375	0.14921	89.375	89.296	89.445	0					9	5	2	0	0	0	0.24749	1	22330	22330		9.3474	0	1	64619	+		12188	10454	8070	8130	16575	16575					-0.04599781257684299
LVEPIELTV	9	Unmodified	_LVEPIELTV_					0	0	0			REV__nc|ENSG00000224287|P0C860|MSL3B	REV__nc|ENSG00000224287|P0C860|MSL3B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.75909423828125	2	506.799883	1011.58521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.562	1	85.562	85.062	86.062	0								0	0	0	0.26267	1	21155	21155		6.7232	1.9672	1		+		12189	12893	8071	8131	16576	16576					0.07988378042989552
LVEPTISDL	9	Unmodified	_LVEPTISDL_					0	0	0			REV__ENST00000490238.5_1_2:86385703-86389088:-|nuORF	REV__ENST00000490238.5_1_2:86385703-86389088:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.77374267578125	2	493.773865	985.533177	0.4637	0.00022896	-0.2567	-0.00012675	0.20701	0.00010222	493.7737046470282	79.791	0.47881	79.817	79.599	80.078	0.026436					25	16	3	0	0	0	0.20358	1	19236	19236		18.146	0	1	98449	+		12190	9111	8072	8132	16577	16577					0.039832146292383186
LVEPTISDL	9	Unmodified	_LVEPTISDL_					0	0	0			REV__ENST00000490238.5_1_2:86385703-86389088:-|nuORF	REV__ENST00000490238.5_1_2:86385703-86389088:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.773865	985.533177	0.75934	0.00037494	-0.52252	-0.00025801	0.23682	0.00011694	493.7735941276309	79.813	0.33738	79.813	79.621	79.958	0	-0.0021638	-0.00014982	NaN	18.146	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103800	+		12191	9111	8072	8132							0.039832146292383186
LVEPTISDL	9	Unmodified	_LVEPTISDL_					0	0	0			REV__ENST00000490238.5_1_2:86385703-86389088:-|nuORF	REV__ENST00000490238.5_1_2:86385703-86389088:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.773865	985.533177	0.4637	0.00022896	-0.2567	-0.00012675	0.20701	0.00010222	493.7737046470282	79.791	0.47881	79.817	79.599	80.078	0.026436	0.0021638	0.00011269	NaN	18.146	25	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98449	+		12192	9111	8072	8132							0.039832146292383186
LVEQVQSLI	9	Unmodified	_LVEQVQSLI_					0	0	0			REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF	REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2947998046875	2	514.802957	1027.59136	-0.088075	-4.5341E-05	0.075627	3.8933E-05	-0.012448	-6.4085E-06	514.8028946651466	44.05	0.70186	44.05	43.829	44.531	0					58	23	3	0	0	0	0.11547	1	8590	8590		29.082	0	1	642440	+		12193	11514	8073	8133	16578	16578					0.0786689627452688
LVEQVQSLI	9	Unmodified	_LVEQVQSLI_					0	0	0			REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF	REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.294921875	2	514.802957	1027.59136	0.038468	1.9804E-05	0.0044573	2.2946E-06	0.042925	2.2098E-05	514.8029435138775	43.944	0.66211	44.033	43.818	44.48	0.088924					61	22	4	0	0	0	0.091044	1	8428	8428		34.402	3.7652	1	481010	+		12194	11514	8073	8133	16579	16579					0.0786689627452688
LVFCRQSVS	9	Unmodified	_LVFCRQSVS_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.3232421875	2	519.773677	1037.5328	0.26616	0.00013834	1.4235	0.00073989	1.6896	0.00087823	520.276758642357	74.139	0.097305	74.139	74.074	74.171	0					5	3	2	0	0	0	0.2491	1	17653	17653		8.5933	0.68312	1	63825	+		12195	8112	8074	8134	16580	16580					0.015535164283846825
LVFGQTPSQ	9	Unmodified	_LVFGQTPSQ_					0	0	0		nc|ENSG00000112494|Q86WB7-2|UNC93A;ENSG00000112494|ENST00000230256|UNC93A	nc|ENSG00000112494|Q86WB7-2|UNC93A	nc|ENSG00000112494|Q86WB7-2|UNC93A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.1095886230469	2	488.758549	975.502546	0.059132	2.8901E-05	-0.35849	-0.00017522	-0.29936	-0.00014631	488.758228465021	51.142	0.37967	51.142	51.006	51.386	0					21	12	2	0	0	0	0.23598	1	10675	10675		15.847	0	1	102460			12196	1761	8075	8135	16581	16581					0.013814810348435458
LVFGQTPSQ	9	Unmodified	_LVFGQTPSQ_					0	0	0		nc|ENSG00000112494|Q86WB7-2|UNC93A;ENSG00000112494|ENST00000230256|UNC93A	nc|ENSG00000112494|Q86WB7-2|UNC93A	nc|ENSG00000112494|Q86WB7-2|UNC93A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	488.758549	975.502546	0.16473	8.0515E-05	1.7115	0.0008365	1.8762	0.00091701	488.75839580472194	51.106	0.38721	51.175	50.996	51.383	0.069874	0.016709	0.0017669	NaN	15.847	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92256			12197	1761	8075	8135							0.013814810348435458
LVFKKTIV	8	Unmodified	_LVFKKTIV_					0	0	0		nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.318359375	2	474.318046	946.621539	0.28865	0.00013691	-0.38907	-0.00018454	-0.10042	-4.7633E-05	474.31782494683335	92.724	0.4007	92.761	92.524	92.925	0.03653					19	13	2	0	0	0	0.52502	1	23138	23138		9.3474	0	1	129150			12198	3765	8076	8136	16582	16582					0.14609299730364
LVFTLAGALF	10	Unmodified	_LVFTLAGALF_					0	0	0		ENST00000541233.1_1_12:6554564-6560555:+|nuORF;ENSG00000139193|ENST00000266557|CD27	ENST00000541233.1_1_12:6554564-6560555:+|nuORF	ENST00000541233.1_1_12:6554564-6560555:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7681274414062	2	526.312961	1050.61137	0.10124	5.3285E-05	-0.26557	-0.00013978	-0.16433	-8.649E-05	526.3126764403852	73.739	0.35068	73.739	73.598	73.949	0					18	11	2	0	0	0	0.31585	1	17585	17585		10.824	0	1	96686			12199	2956	8077	8137	16583	16583					0.08808692005118246
LVGDDEHNPCS	11	Unmodified	_LVGDDEHNPCS_					0	0	0			REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF	REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2454833984375	2	593.245677	1184.4768	0.49837	0.00029565	-0.79723	-0.00047295	-0.29886	-0.0001773	593.2453068643985	55.203	1.9666	55.203	54.573	56.539	0					194	73	4	0	0	0	0.39378	1	12055	12055		5.7319	1.4026	1	1184400	+		12200	12385	8078	8138	16584	16584					-0.10805781269732506
LVGDDEHNPCS	11	Unmodified	_LVGDDEHNPCS_					0	0	0			REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF	REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2456665039062	2	593.245677	1184.4768	0.43894	0.0002604	-0.81737	-0.0004849	-0.37842	-0.0002245	593.2453245231201	55.193	1.381	55.258	54.779	56.16	0.065128					122	53	3	0	0	0	0.38315	1	11828	11828		8.1555	0.8663	1	901360	+		12201	12385	8078	8138	16585	16585					-0.10805781269732506
LVGFMQYLG	9	Unmodified	_LVGFMQYLG_					0	0	0			REV__ENST00000366463.6_1_22:36886057-36894231:-|nuORF	REV__ENST00000366463.6_1_22:36886057-36894231:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2677001953125	2	514.267696	1026.52084	0.14265	7.3359E-05	-0.048824	-2.5109E-05	0.093823	4.825E-05	514.267630414968	20.105	0.32082	20.2	20.052	20.373	0.095234					77	34	3	0	0	0	0.25209	1	1436	1436		12.532	0	1	76034	+		12202	8386	8079	8139	16586	16586					0.008638996851914271
LVGFMQYLG	9	Unmodified	_LVGFMQYLG_					0	0	0			REV__ENST00000366463.6_1_22:36886057-36894231:-|nuORF	REV__ENST00000366463.6_1_22:36886057-36894231:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	514.267696	1026.52084	-0.26675	-0.00013718	0.38765	0.00019935	0.1209	6.2174E-05	514.2678637933177	20.201	0.44497	20.201	20.039	20.484	0	0.00055406	0.00023985	NaN	12.532	81	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62313	+		12203	8386	8079	8139							0.008638996851914271
LVGFMQYLG	9	Unmodified	_LVGFMQYLG_					0	0	0			REV__ENST00000366463.6_1_22:36886057-36894231:-|nuORF	REV__ENST00000366463.6_1_22:36886057-36894231:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	514.267696	1026.52084	0.14265	7.3359E-05	-0.048824	-2.5109E-05	0.093823	4.825E-05	514.267630414968	20.105	0.32082	20.2	20.052	20.373	0.095234	-0.00055406	-0.00020908	NaN	12.532	77	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76034	+		12204	8386	8079	8139							0.008638996851914271
LVGLLIALK	9	Unmodified	_LVGLLIALK_					0	0	0			REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1	REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.33209228515625	2	470.333696	938.652839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.89	1	115.89	115.39	116.39	0								0	0	0	0.29525	1	29529	29529		0	0	1		+		12205	13131	8080	8140	16587	16587					0.18105872764442665
LVGLLIALK	9	Unmodified	_LVGLLIALK_					0	0	0			REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1	REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.332275390625	2	470.333696	938.652839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.384	1	67.449	66.949	67.949	0.065071								0	0	0	0.29525	1	15459	15459		0	0	1		+		12206	13131	8080	8140	16588	16588					0.18105872764442665
LVGQEFEL	8	Unmodified	_LVGQEFEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.7475891113281	2	467.74765	933.480748	0.44995	0.00021046	-1.105	-0.00051686	-0.65504	-0.00030639	467.74718705792657	69.711	0.35412	69.711	69.496	69.85	0					14	11	2	0	0	0	0.49783	1	16344	16344		13.042	1.4022	1	43643			12207	605	8081	8141	16589	16589					0.011346762862785909
LVINKDLAE	9	Unmodified	_LVINKDLAE_					0	0	0		ENST00000570005.5_1_16:2732549-2747193:+|nuORF;ENSG00000167977|ENST00000301738|KCTD5;ENST00000399702.5_1_16:2660819-2678872:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.3031311035156	2	507.795132	1013.57571	0.34379	0.00017457	-0.55039	-0.00027948	-0.2066	-0.00010491	507.79492743437817	55.862	0.31508	55.862	55.692	56.007	0					16	10	2	0	0	0	0.2446	1	12121	12121		7.2892	0	1	111710			12208	4246	8082	8142	16590	16590					0.06946609757460465
LVINKDLAE	9	Unmodified	_LVINKDLAE_					0	0	0		ENST00000570005.5_1_16:2732549-2747193:+|nuORF;ENSG00000167977|ENST00000301738|KCTD5;ENST00000399702.5_1_16:2660819-2678872:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	507.795132	1013.57571	0.2812	0.00014279	-0.27248	-0.00013836	0.008716	4.4259E-06	507.7949308721266	55.815	0.36526	55.88	55.674	56.039	0.065128	0.0089266	0.00018551	NaN	7.2892	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120850			12209	4246	8082	8142							0.06946609757460465
LVKIKLKQRR	10	Unmodified	_LVKIKLKQRR_					0	0	0		ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ENSG00000183579|ENST00000544604|ZNRF3	ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.1145629882812	2	641.445706	1280.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.28	1	114.29	113.79	114.79	0.013336								0	0	0	0.33984	1	29095	29095		0.40072	0.093686	1				12210	4930	8083	8143	16591	16591					0.2476558091843799
LVKSHLMYA	9	Unmodified	_LVKSHLMYA_					0	0	0		nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2;ENSG00000102804|ENST00000458659|TSC22D1	nc|ENSG00000102804|Q15714-5|TSC22D1	nc|ENSG00000102804|Q15714-5|TSC22D1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7420654296875	2	531.294245	1060.57394	-0.5816	-0.000309	-3.3078	-0.0017574	-3.8894	-0.0020664	531.7948323568543	41.807	0.32909	41.807	41.609	41.938	0					14	11	2	0	0	0	0.25699	1	7807	7807		3.5965	0	1	21315			12211	1330	8084	8144	16592	16592					0.04607277467880522
LVLCEQTCM	9	Unmodified	_LVLCEQTCM_					0	0	0			REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3236083984375	2	520.234681	1038.45481	0.21443	0.00011155	-0.40232	-0.0002093	-0.18789	-9.7749E-05	520.2339217660167	58.153	0.13596	58.153	58.081	58.217	0					7	4	2	0	0	0	0.24263	1	12816	12816		12.532	0.89125	1	71216	+		12212	10627	8085	8145	16593	16593					-0.06288000543509042
LVLDEFYSSL	10	Unmodified	_LVLDEFYSSL_					0	0	0		nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-3|GPN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2452392578125	2	593.305529	1184.59651	0.24605	0.00014598	-3.8112	-0.0022612	-3.5652	-0.0021152	593.304074002391	52.123	0.13964	52.191	52.088	52.227	0.067173					5	4	2	0	0	0	0.31585	1	10828	10828		10.824	1.4408	1	55690			12213	5372	8086	8146	16594	16594					0.011591553464768367
LVLDMVYY	8	Unmodified	_LVLDMVYY_					0	0	0			REV__nc|ENSG00000205560|Q92523-2|CPT1B	REV__nc|ENSG00000205560|Q92523-2|CPT1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.23828125	2	508.262079	1014.50961	-0.10612	-5.3934E-05	-0.22162	-0.00011264	-0.32774	-0.00016658	508.2618401380604	25.963	0.23267	26.054	25.971	26.204	0.091507					23	19	2	0	0	0	0.3576	1	2982	2982		2.5775	0	1	14934	+		12214	10977	8087	8147	16595	16595					0.0029307759106131925
LVLLPLIIRVV	11	Unmodified	_LVLLPLIIRVV_					0	0	0		tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1	tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1	tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.4431762695312	2	624.444309	1246.87407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.97	1	110.98	110.48	111.48	0.015678								0	0	0	0.34125	1	28302	28302		0.30703	0	1				12215	13498	8088	8148	16596	16596					0.2605031274090379
LVLLRALLKQP	11	Unmodified	_LVLLRALLKQP_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.4299926757812	2	632.42919	1262.84383	-0.18725	-0.00011842	1.6943	0.0010715	1.5071	0.00095312	632.4298741464678	108.77	0.187	108.77	108.72	108.91	0					31	28	2	0	0	0	0.41757	1	28037	28037		0.30703	0	1	1083300	+		12216	10656	8089	8149	16597	16597					0.2229195407574025
LVLLRALLKQP	11	Unmodified	_LVLLRALLKQP_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	632.42919	1262.84383	-0.18725	-0.00011842	1.6943	0.0010715	1.5071	0.00095312	632.4298741464678	108.77	0.187	108.77	108.72	108.91	0	0.017694	0.00030476	NaN	0.30703	31	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1083300	+		12217	10656	8089	8149							0.2229195407574025
LVLLRALLKQP	11	Unmodified	_LVLLRALLKQP_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	632.42919	1262.84383	0.26405	0.000167	-0.31965	-0.00020215	-0.055593	-3.5159E-05	632.4282491818357	108.71	0.037186	108.73	108.71	108.75	0.019402	-0.017694	-0.0022426	NaN	0.30703	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351490	+		12218	10656	8089	8149							0.2229195407574025
LVMCVSSLTLL	11	Unmodified	_LVMCVSSLTLL_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8294677734375	2	589.829803	1177.64505	0.30588	0.00018042	0.29894	0.00017632	0.60483	0.00035674	589.8299317610013	49.721	0.57037	49.721	49.534	50.105	0					31	19	2	0	0	0	0.3917	1	10227	10227		6.2058	0.47393	1	85726			12219	5491	8090	8150	16598	16598					0.06333609390389938
LVNALGFIH	9	Unmodified	_LVNALGFIH_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7945861816406	2	492.287277	982.560001	0.46103	0.00022696	-4.323	-0.0021281	-3.8619	-0.0019012	492.28508223969857	91.499	0.28302	91.499	91.319	91.602	0					15	10	2	0	0	0	0.25845	1	22948	22948		2.0598	0.21551	1	54890	+		12220	10370	8091	8151	16599	16599					0.06802368031105743
LVNKHRNCDK	10	Unmodified	_LVNKHRNCDK_					0	0	0		ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.276123046875	2	613.824763	1225.63497	0.20141	0.00012363	2.6659	0.0016364	2.8673	0.00176	613.826307022489	74.173	0.24164	74.222	74.101	74.342	0.048546					14	8	2	0	0	0	0.31496	1	17533	17533		5.7319	0	1	69665			12221	5247	8092	8152	16600	16600					0.031181824999976016
LVNRHCPIE	9	Unmodified	_LVNRHCPIE_					0	0	0			REV__KLHL38|p.M201Sfs*6|1|0.3|ENSG00000175946|chr8:123652324-123652325|CA/-|frameshift_variant	REV__KLHL38|p.M201Sfs*6|1|0.3|ENSG00000175946|chr8:123652324-123652325|CA/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3311157226562	2	540.784576	1079.5546	0.69161	0.00037401	-1.4498	-0.00078403	-0.7582	-0.00041002	540.7843595779141	83.973	0.40544	83.973	83.749	84.154	0					24	13	2	0	0	0	0.2491	1	20623	20623		8.5933	0	1	74328	+		12222	10392	8093	8153	16601	16601					0.018003211769382688
LVPNFTFNL	9	Unmodified	_LVPNFTFNL_					0	0	0		ENST00000463410.1_1_10:75566827-75567228:-|nuORF;nc|ENSG00000166507|P52849-2|NDST2;ENSG00000166507|ENST00000309979|NDST2	ENST00000463410.1_1_10:75566827-75567228:-|nuORF	ENST00000463410.1_1_10:75566827-75567228:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3086547851562	2	532.792392	1063.57023	0.33841	0.0001803	-2.9664	-0.0015805	-2.628	-0.0014002	532.7908915278092	60.052	0.45922	60.124	59.967	60.426	0.072338					25	16	2	0	0	0	0.16036	1	13218	13218		23.148	1.4018	1	184080			12223	4164	8094	8154	16602	16602					0.04098930965665204
LVPQIPLLLP	10	Unmodified	_LVPQIPLLLP_					0	0	0		ENST00000564910.5_1_15:66161870-66170170:+|nuORF;ENST00000565075.5_1_15:66161855-66169768:+|nuORF	ENST00000564910.5_1_15:66161870-66170170:+|nuORF	ENST00000564910.5_1_15:66161870-66170170:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.8632202148438	2	551.86536	1101.71617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.67	1	111.68	111.18	112.18	0.015678								0	0	0	0.33892	1	28468	28468		1.4819	0	1				12224	7176	8095	8155	16603	16603					0.1693781348169523
LVPWWRSLPL	10	Unmodified	_LVPWWRSLPL_					0	0	0		ENST00000402802.7_1_7:536981-537197:-|nuORF	ENST00000402802.7_1_7:536981-537197:-|nuORF	ENST00000402802.7_1_7:536981-537197:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.870849609375	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.901	1	93.939	93.439	94.439	0.038086								0	0	0	0.33738	1	23532	23532		3.2813	0.54611	1				12225	6369	8096	8156	16604	16604					0.10622849944752488
LVQVNEWS	8	Unmodified	_LVQVNEWS_					0	0	0		nc|ENSG00000115561|Q9Y3E7-3|CHMP3	nc|ENSG00000115561|Q9Y3E7-3|CHMP3	nc|ENSG00000115561|Q9Y3E7-3|CHMP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7502746582031	2	487.750724	973.486896	0.036942	1.8018E-05	-1.809	-0.00088236	-1.7721	-0.00086434	487.7497523650302	50.373	0.47074	50.373	50.18	50.651	0					31	16	3	0	0	0	0.30669	1	10427	10427		34.102	0	1	195600			12226	7487	8097	8157	16605	16605					-0.0009080548219344564
LVQVNEWS	8	Unmodified	_LVQVNEWS_					0	0	0		nc|ENSG00000115561|Q9Y3E7-3|CHMP3	nc|ENSG00000115561|Q9Y3E7-3|CHMP3	nc|ENSG00000115561|Q9Y3E7-3|CHMP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7496337890625	2	487.750724	973.486896	0.13531	6.6E-05	-1.9924	-0.00097181	-1.8571	-0.00090581	487.74975208168667	50.318	0.45692	50.391	50.181	50.638	0.07312					28	15	3	0	0	0	0.20402	1	10276	10276		42.095	0	1	126250			12227	7487	8097	8157	16606	16606					-0.0009080548219344564
LVSARKSR	8	Unmodified	_LVSARKSR_					0	0	0			REV__CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant	REV__CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.7878112792969	2	458.787976	915.561398	0.62135	0.00028507	-0.46036	-0.00021121	0.161	7.3863E-05	458.787675885922	87.93	1.3529	87.93	87.603	88.956	0					109	51	4	0	0	0	0.50815	1	21900	21900		11.64	3.047	1	2154300	+		12228	7863	8098	8158	16607	16607					0.10024002119848774
LVSARKSR	8	Unmodified	_LVSARKSR_					0	0	0			REV__CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant	REV__CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.7879943847656	2	458.787976	915.561398	0.18269	8.3814E-05	-0.01972	-9.0472E-06	0.16297	7.4767E-05	458.78789094287606	87.923	1.1413	87.953	87.628	88.77	0.030037					104	43	4	0	0	0	0.50815	1	21714	21714		11.64	3.047	1	1535200	+		12229	7863	8098	8158	16608	16608					0.10024002119848774
LVSARKSR	8	Unmodified	_LVSARKSR_					0	0	0			REV__CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant	REV__CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	458.787976	915.561398	0.62135	0.00028507	-0.46036	-0.00021121	0.161	7.3863E-05	458.787675885922	87.93	1.3529	87.93	87.603	88.956	0	-0.011464	-0.00024223	NaN	11.64	109	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2154300	+		12230	7863	8098	8158							0.10024002119848774
LVSEPQMPDA	10	Unmodified	_LVSEPQMPDA_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.798828125	2	543.760432	1085.50631	0.33666	0.00018306	-0.51143	-0.00027809	-0.17477	-9.5032E-05	544.261392916306	38.473	0.17154	38.473	38.396	38.567	0					7	5	2	0	0	0	0.31783	1	6842	6842		3.9444	0	1	17722			12231	5588	8099	8159	16609	16609					-0.03302217253599338
LVSFERLL	8	Unmodified	_LVSFERLL_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.79498291015625	2	488.794935	975.575317	0.31713	0.00015501	0.17798	8.6994E-05	0.49511	0.00024201	488.79489262684683	55.398	0.57517	55.463	55.292	55.868	0.065128					56	21	4	0	0	0	0.53202	1	11924	11924		6.7232	0	1	795630	+		12232	8187	8100	8160	16610	16610					0.08655234828290759
LVSLILLEL	9	Unmodified	_LVSLILLEL_					0	0	0		ENST00000494792.1_1_10:126463275-126477652:-|nuORF	ENST00000494792.1_1_10:126463275-126477652:-|nuORF	ENST00000494792.1_1_10:126463275-126477652:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7361755371094	2	506.836268	1011.65798	0.28296	0.00014342	-3.1382	-0.0015905	-2.8552	-0.0014471	506.8344688809653	52.755	0.34019	52.822	52.695	53.035	0.067169					16	14	2	0	0	0	0.25875	1	11047	11047		1.8442	0.19162	1	45137			12233	6829	8101	8161	16611	16611					0.15262131836425397
LVSTVGIWF	9	Unmodified	_LVSTVGIWF_					0	0	0			REV__nc|ENSG00000118432|P21554-2|CNR1	REV__nc|ENSG00000118432|P21554-2|CNR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2889404296875	2	511.289485	1020.56442	0.32248	0.00016488	-3.7457	-0.0019151	-3.4232	-0.0017502	511.28785898436365	52.635	0.59289	52.702	52.493	53.085	0.067169					50	23	3	0	0	0	0.28587	1	11058	11058		8.5933	0	1	156840	+		12234	8842	8102	8162	16612	16612					0.0549583245398253
LVTGAMIVLE	10	Unmodified	_LVTGAMIVLE_					0	0	0			REV__ENSG00000148123|ENST00000374874|PLPPR1	REV__ENSG00000148123|ENST00000374874|PLPPR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.303466796875	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.594	1	81.594	81.094	82.094	0								0	0	0	0.32828	1	19949	19949		13.906	0	1		+		12235	9583	8103	8163	16613	16613					0.06840724545213561
LVTMEWWTHLW	11	Unmodified	_LVTMEWWTHLW_					0	0	0		ENST00000525021.1_1_17:45664518-45669341:+|nuORF;ENST00000533538.5_1_17:45664518-45669919:+|nuORF;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS	ENST00000525021.1_1_17:45664518-45669341:+|nuORF	ENST00000525021.1_1_17:45664518-45669341:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2926940917969	3	501.248074	1500.72239	0.26946	0.00013507	2.4341	0.0012201	2.7035	0.0013551	501.2492723807059	56	0.30069	56.066	55.843	56.144	0.066452					16	10	2	0	0	0	0.31087	1	12003	12003		2.8433	0.4085	1	114890			12236	3049	8104	8164	16614	16614					-0.007940363490888558
LVTSIQGHL	9	Unmodified	_LVTSIQGHL_					0	0	0		nc|ENSG00000117091|P09326-2|CD48;ENSG00000117091|ENST00000368046|CD48	nc|ENSG00000117091|P09326-2|CD48	nc|ENSG00000117091|P09326-2|CD48	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2822265625	2	484.282192	966.549831	-0.21437	-0.00010382	0.45519	0.00022044	0.24082	0.00011662	484.28234548443385	45.458	0.27483	45.545	45.396	45.671	0.086868					14	9	2	0	0	0	0.24021	1	8817	8817		13.906	0	1	46477			12237	1986	8105	8165	16615	16615					0.06521760305861335
LVTSIQGHL	9	Unmodified	_LVTSIQGHL_					0	0	0		nc|ENSG00000117091|P09326-2|CD48;ENSG00000117091|ENST00000368046|CD48	nc|ENSG00000117091|P09326-2|CD48	nc|ENSG00000117091|P09326-2|CD48	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.282192	966.549831	-0.46928	-0.00022726	0.50213	0.00024317	0.032855	1.5911E-05	484.2821406553901	45.552	0.31339	45.552	45.416	45.729	0	0.0034838	3.0951E-05	NaN	13.906	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48754			12238	1986	8105	8165							0.06521760305861335
LVTSRHKN	8	Unmodified	_LVTSRHKN_					0	0	0			REV__ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant	REV__ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.77740478515625	2	477.777608	953.540663	-0.2781	-0.00013287	0.032517	1.5536E-05	-0.24558	-0.00011733	477.77758748438407	23.744	0.30078	23.844	23.685	23.986	0.099739					39	27	2	0	0	0	0.53894	1	2350	2350		2.0598	0	1	23423	+		12239	10211	8106	8166	16616	16616					0.062034117401822186
LVTTRLQSHLK	11	Unmodified	_LVTTRLQSHLK_					0	0	0			REV__nc|ENSG00000132613|Q765P7-2|MTSS2	REV__nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.392578125	2	648.393336	1294.77212	0.22945	0.00014878	-0.42264	-0.00027404	-0.19319	-0.00012526	648.3931465879183	102.75	0.6739	102.75	102.54	103.21	0					68	43	2	0	0	0	0.3996	1	26376	26376		5.2969	2.7984	1	206020	+		12240	9123	8107	8167	16617	16617					0.13652414651210165
LVVHVEPAL	9	Unmodified	_LVVHVEPAL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7950439453125	2	488.794935	975.575317	0.38966	0.00019046	0.085329	4.1709E-05	0.47499	0.00023217	488.79484635047936	55.463	0.85125	55.463	55.243	56.094	0					74	29	4	0	0	0	0.0043406	3	11969	11969;12010;12076		97.075	52.668	1	922880			12241	979	8108	8168	16618;16619;16620	16618					0.08655234828268021
LVVHVEPAL	9	Unmodified	_LVVHVEPAL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7950744628906	2	488.794935	975.575317	0.31713	0.00015501	0.17798	8.6994E-05	0.49511	0.00024201	488.79489262684683	55.398	0.57517	55.463	55.292	55.868	0.065128					56	21	4	0	0	0	0.004452	2	11817	11817;11860		92.822	58.42	1	795630			12242	979	8108	8168	16621;16622	16621					0.08655234828268021
LVVLLKPPLLL	11	Unmodified	_LVVLLKPPLLL_					0	0	0		CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.4364624023438	2	609.43341	1216.85227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.82	1	112.84	112.34	113.34	0.013817								0	0	0	0.34212	1	28797	28797		0	0	1				12243	114	8109	8169	16623	16623					0.2525150799237963
LVVRFLKR	8	Unmodified	_LVVRFLKR_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76198560-76243086:+|nuORF;nc|ENSG00000119685|Q6EMB2-2|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8475341796875	2	515.847836	1029.68112	0.31597	0.00016299	0.079186	4.0848E-05	0.39516	0.00020384	515.8476932444217	109.45	0.52798	109.47	109.15	109.67	0.019402					91	60	2	0	0	0	0.54097	1	27958	27958		0.69038	0	1	1118800			12244	2081	8110	8170	16624	16624					0.16746615464421666
LVVSWLPVL	9	Unmodified	_LVVSWLPVL_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.3212890625	2	513.323328	1024.6321	0.49468	0.00025393	-2.6644	-0.0013677	-2.1697	-0.0011138	513.8232155238794	68.184	0.31921	68.247	68.089	68.408	0.063507					18	11	2	0	0	0	0.20367	1	15702	15702		18.135	0	1	114820			12245	5114	8111	8171	16625	16625					0.12077282384802857
LVVSYPFDF	9	Unmodified	_LVVSYPFDF_					0	0	0		ENST00000513120.2_1_4:8605677-8612970:+|nuORF;ENST00000514302.5_1_4:8602857-8612970:+|nuORF;nc|ENSG00000109625|Q66K79-3|CPZ;nc|ENSG00000109625|Q66K79-2|CPZ;ENSG00000109625|ENST00000360986|CPZ	ENST00000513120.2_1_4:8605677-8612970:+|nuORF	ENST00000513120.2_1_4:8605677-8612970:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.798828125	2	543.778951	1085.54335	0.3553	0.0001932	-1.7276	-0.00093943	-1.3723	-0.00074623	543.7779202696224	38.38	0.52087	38.38	38.076	38.597	0					22	17	2	0	0	0	0.25504	1	6842	6842		4.756	0	1	15053			12246	1636	8112	8172	16626	16626					0.003998223544613211
LVVTKKKS	8	Unmodified	_LVVTKKKS_					0	0	0		nc|ENSG00000130762|Q5VV41-2|ARHGEF16;ENSG00000130762|ENST00000378378|ARHGEF16	nc|ENSG00000130762|Q5VV41-2|ARHGEF16	nc|ENSG00000130762|Q5VV41-2|ARHGEF16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.8045349121094	2	451.805303	901.596052	0.070229	3.173E-05	-0.71926	-0.00032497	-0.64903	-0.00029324	451.80490823163	112.4	0.95267	112.4	112.14	113.09	0					287	108	4	0	0	0	0.5411	1	28730	28730		0.6015	0	1	5530800			12247	2494	8113	8173	16627	16627					0.14131825207937254
LVWMDKCFGQ	10	Unmodified	_LVWMDKCFGQ_					0	0	0			REV__nc|ENSG00000135749|A6NKB5-2|PCNX2	REV__nc|ENSG00000135749|A6NKB5-2|PCNX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.2393188476562	2	613.788469	1225.56239	-0.35763	-0.00021951	0.86781	0.00053265	0.51018	0.00031314	613.7889183758227	58.894	0.88691	58.894	58.473	59.36	0					59	31	3	0	0	0	0.31616	1	12928	12928		10.074	3.3508	1	250060	+		12248	11402	8114	8174	16628	16628					-0.041372876178002116
LVWMDKCFGQ	10	Unmodified	_LVWMDKCFGQ_					0	0	0			REV__nc|ENSG00000135749|A6NKB5-2|PCNX2	REV__nc|ENSG00000135749|A6NKB5-2|PCNX2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	613.788469	1225.56239	-0.071407	-4.3829E-05	1.3362	0.00082017	1.2648	0.00077634	613.7890115106322	58.833	0.54295	58.903	58.658	59.201	0.070477	0.0045527	0.00029349	NaN	10.074	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352380	+		12249	11402	8114	8174							-0.041372876178002116
LVYIRESKL	9	Unmodified	_LVYIRESKL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.83935546875	2	560.839874	1119.66519	0.32162	0.00018038	-0.15	-8.4127E-05	0.17162	9.6252E-05	560.8397156575539	46.635	1.1201	46.718	46.546	47.666	0.083096					155	54	4	0	0	0	0.2125	1	9315	9315		17.113	0	1	3464000			12250	5124	8115	8175	16629	16629					0.11014864436833705
LVYRRFLFVVF	11	Unmodified	_LVYRRFLFVVF_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.9590148925781	3	486.958852	1457.85473	0.27122	0.00013207	0.42523	0.00020707	0.69645	0.00033914	487.29343990683066	96.854	1.3041	96.854	96.134	97.438	0					161	61	3	0	0	0	0.4167	2	24758	24712;24758		0.50596	0.50596	1	344120			12251	910	8116	8176	16630;16631	16631					0.14411356450000312
LVYVVSGVFF	10	Unmodified	_LVYVVSGVFF_					0	0	0		NMUR2|p.H309Y|1|0.13|ENSG00000132911|chr5:152395471-152395471|G/A|missense_variant	NMUR2|p.H309Y|1|0.13|ENSG00000132911|chr5:152395471-152395471|G/A|missense_variant	NMUR2|p.H309Y|1|0.13|ENSG00000132911|chr5:152395471-152395471|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8269653320312	2	565.318243	1128.62193	0.21488	0.00012148	-4.4571	-0.0025197	-4.2422	-0.0023982	565.8163253665276	89.093	0.13818	89.093	89.03	89.169	0					6	5	2	0	0	0	0.31667	1	22242	22242		7.9102	0.62092	1	29535			12252	7648	8117	8177	16632	16632					0.0627667465957984
LVYVVSGVFF	10	Unmodified	_LVYVVSGVFF_					0	0	0		NMUR2|p.H309Y|1|0.13|ENSG00000132911|chr5:152395471-152395471|G/A|missense_variant	NMUR2|p.H309Y|1|0.13|ENSG00000132911|chr5:152395471-152395471|G/A|missense_variant	NMUR2|p.H309Y|1|0.13|ENSG00000132911|chr5:152395471-152395471|G/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	565.318243	1128.62193	0.25813	0.00014593	-5.3292	-0.0030127	-5.071	-0.0028667	565.8159509999151	88.976	0.11083	89.008	88.977	89.088	0.032257	-0.042538	-0.00026885	NaN	7.9102	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77785			12253	7648	8117	8177							0.0627667465957984
LWALIPLRRQ	10	Unmodified	_LWALIPLRRQ_					0	0	0			REV__SLC26A11-OAF|1|fusion	REV__SLC26A11-OAF|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3973388671875	2	633.395682	1264.77681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.73	1	114.73	114.23	115.23	0								0	0	0	0.33979	1	29288	29288		0.45834	0.057624	1		+		12254	10524	8118	8178	16633	16633					0.15501343584651295
LWAPRPFNL	9	Unmodified	_LWAPRPFNL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7525634765625	2	557.313826	1112.6131	0.66357	0.00036981	-0.64468	-0.00035929	0.018883	1.0523E-05	557.3137260442427	69.953	0.60087	69.953	69.791	70.391	0					35	22	2	0	0	0	0.2298	1	16376	16376		16.942	6.1184	1	274680			12255	4573	8119	8179	16634	16634					0.061297458137460126
LWAPRPFNL	9	Unmodified	_LWAPRPFNL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7521362304688	2	557.313826	1112.6131	0.61852	0.00034471	-1.1344	-0.00063223	-0.51591	-0.00028752	557.313681752203	69.856	0.53403	69.916	69.723	70.257	0.060562					39	22	2	0	0	0	0.25051	1	16179	16179		7.9102	1.187	1	179020			12256	4573	8119	8179	16635	16635					0.061297458137460126
LWAQLRVP	8	Unmodified	_LWAQLRVP_					0	0	0			REV__ENST00000419533.1_1_1:19477984-19504233:-|nuORF	REV__ENST00000419533.1_1_1:19477984-19504233:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2980651855469	2	491.795269	981.575986	-0.021432	-1.054E-05	1.1134	0.00054756	1.092	0.00053702	491.7956564886552	43.518	0.60598	43.607	43.267	43.873	0.088921					38	21	2	0	0	0	0.53817	1	8284	8284		2.5775	0.27475	1	65242	+		12257	8999	8120	8180	16636	16636					0.08446074267999393
LWAVLYGHQL	10	Unmodified	_LWAVLYGHQL_					0	0	0			REV__nc|ENSG00000132259|Q8IV77-2|CNGA4	REV__nc|ENSG00000132259|Q8IV77-2|CNGA4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3300170898438	2	600.332216	1198.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.309	1	45.309	44.809	45.809	0								0	0	0	0.33681	1	8896	8896		3.9444	0.66309	1		+		12258	9109	8121	8181	16637	16637					0.05849997639666071
LWCPMAEEL	9	Unmodified	_LWCPMAEEL_					0	0	0			REV__ENSG00000177558|ENST00000324675|FAM187B	REV__ENSG00000177558|ENST00000324675|FAM187B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7891845703125	2	546.248646	1090.48274	0.027478	1.501E-05	0.18487	0.00010099	0.21235	0.000116	546.2486115828704	46.141	0.74624	46.141	45.703	46.449	0					53	25	3	0	0	0	0.25051	1	9140	9140		7.9102	0.62092	1	120240	+		12259	10432	8122	8182	16638	16638					-0.05888354291755604
LWDEVLSHL	9	Unmodified	_LWDEVLSHL_					0	0	0		ENSG00000147854|ENST00000276893|UHRF2	ENSG00000147854|ENST00000276893|UHRF2	ENSG00000147854|ENST00000276893|UHRF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.80322265625	2	556.292756	1110.57096	0.70393	0.00039159	0.058177	3.2364E-05	0.76211	0.00042396	556.2927758922954	77.799	0.32623	77.834	77.649	77.975	0.034485					17	10	2	0	0	0	0.24635	1	18668	18668		10.824	5.0635	1	120680			12260	3345	8123	8183	16639	16639					0.02009725614720992
LWDFGYTCR	9	Unmodified	_LWDFGYTCR_					0	0	0		nc|ENSG00000182931|Q8IUB3-2|WFDC10B	nc|ENSG00000182931|Q8IUB3-2|WFDC10B	nc|ENSG00000182931|Q8IUB3-2|WFDC10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.287841796875	2	580.763309	1159.51206	0.47578	0.00027631	0.80146	0.00046546	1.2772	0.00074177	580.7636414957921	94.563	0.55737	94.601	94.4	94.957	0.038086					37	22	2	0	0	0	0.3182	1	23785	23785		4.3292	0.73274	1	203310			12261	7570	8124	8184	16640	16640					-0.061310739512691725
LWDFGYTCR	9	Unmodified	_LWDFGYTCR_					0	0	0		nc|ENSG00000182931|Q8IUB3-2|WFDC10B	nc|ENSG00000182931|Q8IUB3-2|WFDC10B	nc|ENSG00000182931|Q8IUB3-2|WFDC10B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	580.763309	1159.51206	0.4668	0.0002711	1.7569	0.0010204	2.2237	0.0012915	580.7639464870151	94.647	0.60333	94.647	94.371	94.974	0	0.022718	0.00073766	NaN	4.3292	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90757			12262	7570	8124	8184							-0.061310739512691725
LWDFGYTCR	9	Unmodified	_LWDFGYTCR_					0	0	0		nc|ENSG00000182931|Q8IUB3-2|WFDC10B	nc|ENSG00000182931|Q8IUB3-2|WFDC10B	nc|ENSG00000182931|Q8IUB3-2|WFDC10B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	580.763309	1159.51206	0.47578	0.00027631	0.80146	0.00046546	1.2772	0.00074177	580.7636414957921	94.563	0.55737	94.601	94.4	94.957	0.038086	-0.022718	-0.00037213	NaN	4.3292	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203310			12263	7570	8124	8184							-0.061310739512691725
LWDFLLLSS	9	Unmodified	_LWDFLLLSS_					0	0	0		ENST00000492001.1_1_7:44796309-44796525:+|nuORF	ENST00000492001.1_1_7:44796309-44796525:+|nuORF	ENST00000492001.1_1_7:44796309-44796525:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2991333007812	2	547.30005	1092.58555	0.43688	0.0002391	-1.8114	-0.00099138	-1.3745	-0.00075228	547.2990710619691	100.54	0.44958	100.54	100.41	100.86	0					43	25	2	0	0	0	0.21398	1	25747	25747		16.942	4.4107	1	90846			12264	6810	8125	8185	16641	16641					0.04295797762870279
LWDHYKNL	8	Unmodified	_LWDHYKNL_					0	0	0			REV__nc|ENSG00000129071|O95243-6|MBD4	REV__nc|ENSG00000129071|O95243-6|MBD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7787475585938	2	544.779816	1087.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.393	1	90.393	89.893	90.893	0								0	0	0	0.38719	1	22623	22623		15.847	1.4418	1		+		12265	9029	8126	8186	16642	16642					0.00480876163078392
LWDPVIELI	9	Unmodified	_LWDPVIELI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.3165893554688	2	549.3157	1096.61685	0.33796	0.00018564	-0.01005	-5.5207E-06	0.32791	0.00018012	549.315777640429	102.44	0.35063	102.44	102.31	102.66	0					40	23	2	0	0	0	0.19398	1	26273	26273		19.257	6.2145	1	90785			12266	2135	8127	8187	16643	16643					0.07240370796944262
LWDPVIELI	9	Unmodified	_LWDPVIELI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3150024414062	2	549.3157	1096.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.31	1	102.35	101.85	102.85	0.040916								0	0	0	0.2428	1	26085	26085		10.824	2.9138	1				12267	2135	8127	8187	16644	16644					0.07240370796944262
LWDPVIELI	9	Unmodified	_LWDPVIELI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3164672851562	2	549.3157	1096.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.38	1	102.43	101.93	102.93	0.040916								0	0	0	0.090696	1	26108	26108		36.127	13.391	1				12268	2135	8127	8187	16645	16645					0.07240370796944262
LWDQEERLW	9	Unmodified	_LWDQEERLW_					0	0	0		ENST00000562938.5_1_15:78207528-78213944:-|nuORF;ENSG00000215186|ENST00000421285|GOLGA6B;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000140478|ENST00000434739|GOLGA6D	ENST00000562938.5_1_15:78207528-78213944:-|nuORF	ENST00000562938.5_1_15:78207528-78213944:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.8116455078125	2	637.811845	1273.60914	0.15914	0.0001015	0.18776	0.00011975	0.34689	0.00022125	637.8118017394459	90.329	0.5499	90.329	90.184	90.734	0					34	20	2	0	0	0	0.33704	1	22657	22657		1.8442	0	1	173710			12269	3014	8128	8188	16646	16646					-0.016723884706152603
LWDVIIAEL	9	Unmodified	_LWDVIIAEL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.3079833984375	2	536.307875	1070.6012	0.46104	0.00024726	-0.10774	-5.7784E-05	0.3533	0.00018948	536.3076772477528	100.56	1.0202	100.56	100.34	101.36	0					136	59	3	0	0	0	0.0569	1	25745	25745		41.84	21.386	1	612080			12270	1056	8129	8189	16647	16647					0.06872084279916635
LWDVIIAEL	9	Unmodified	_LWDVIIAEL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	536.307875	1070.6012	0.713	0.00038239	-0.49915	-0.0002677	0.21386	0.00011469	536.307455176409	100.61	1.009	100.65	100.3	101.31	0.042839	0.045142	-0.0002617	NaN	41.84	130	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471460			12271	1056	8129	8189							0.06872084279916635
LWEFFLKQ	8	Unmodified	_LWEFFLKQ_					0	0	0			REV__ENST00000445427.1_1_10:6626067-6626238:+|nuORF	REV__ENST00000445427.1_1_10:6626067-6626238:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.80224609375	2	555.80276	1109.59097	0.1751	9.732E-05	-1.4882	-0.00082713	-1.3131	-0.00072981	555.8018735545528	34.3	1.3895	34.3	33.464	34.854	0					86	53	2	0	0	0	0.54097	1	5496	5496		0.69038	0	1	35831	+		12272	11901	8130	8190	16648	16648					0.04055521345321722
LWFCLFVCL	9	Unmodified	_LWFCLFVCL_					0	0	0		ENST00000481559.6_1_5:152869375-153085697:+|nuORF	ENST00000481559.6_1_5:152869375-153085697:+|nuORF	ENST00000481559.6_1_5:152869375-153085697:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3260498046875	2	572.290117	1142.56568	0.039772	2.2761E-05	0.55451	0.00031734	0.59428	0.0003401	572.2908819360073	73.548	0.1833	73.548	73.446	73.63	0					9	6	2	0	0	0	0.20644	1	17498	17498		20.871	6.0329	1	61089			12273	6753	8131	8191	16649	16649					0.00010007226910602185
LWFGGDHDLL	10	Unmodified	_LWFGGDHDLL_					0	0	0			REV__ENST00000586547.1_1_19:12989181-12989643:-|nuORF	REV__ENST00000586547.1_1_19:12989181-12989643:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7896728515625	2	586.790381	1171.56621	0.71018	0.00041673	-0.19769	-0.00011601	0.51249	0.00030072	586.7901774224486	62.56	0.8946	62.633	62.396	63.29	0.072701					74	34	4	0	0	0	0.40987	2	14115	14068;14115		10.824	5.0921	1	1299400	+		12274	8547	8132	8192	16650;16651	16651					-0.012711585280385407
LWFSSPSTISF	11	Unmodified	_LWFSSPSTISF_					0	0	0			REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5	REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.319091796875	2	636.318971	1270.62339	0.4034	0.00025669	-0.1044	-6.6432E-05	0.299	0.00019026	636.3188386484708	99.208	1.2038	99.208	98.4	99.604	0					237	74	4	0	0	0	0.26714	1	25317	25317		27.629	27.629	1	861880	+		12275	12784	8133	8193	16652	16652					-0.0010973604232731304
LWFSSPSTISF	11	Unmodified	_LWFSSPSTISF_					0	0	0			REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5	REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.3190307617188	2	636.318971	1270.62339	0.48951	0.00031149	-0.36349	-0.0002313	0.12602	8.0189E-05	636.3187025866538	98.824	0.3438	98.866	98.653	98.997	0.041931					46	19	3	0	0	0	0.22106	2	25070	25030;25070		34.402	34.402	1	1152800	+		12276	12784	8133	8193	16653;16654	16654					-0.0010973604232731304
LWFSSPSTISF	11	Unmodified	_LWFSSPSTISF_					0	0	0			REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5	REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	636.318971	1270.62339	0.48951	0.00031149	-0.36349	-0.0002313	0.12602	8.0189E-05	636.3187025866538	98.824	0.3438	98.866	98.653	98.997	0.041931	-0.171	-0.00022527	NaN	34.402	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1152800	+		12277	12784	8133	8193							-0.0010973604232731304
LWFWWSLSF	9	Unmodified	_LWFWWSLSF_					0	0	0			REV__ENST00000462375.5_1_9:134384326-134385572:+|nuORF	REV__ENST00000462375.5_1_9:134384326-134385572:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.3192138671875	2	636.316035	1270.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.062	1	99.104	98.604	99.604	0.041992								0	0	0	0.071558	1	25105	25105		42.095	2.1449	1		+		12278	9066	8134	8194	16655	16655					-0.006967897633330722
LWGGRLPSF	9	Unmodified	_LWGGRLPSF_					0	0	0			REV__ENST00000325042.2_1_7:22765745-22766153:-|nuORF	REV__ENST00000325042.2_1_7:22765745-22766153:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7938842773438	2	516.784902	1031.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.438	1	92.438	91.938	92.938	0								0	0	0	0.22204	1	23245	23245		14.838	2.3067	1		+		12279	11405	8135	8195	16656	16656					0.04073483888305418
LWGHRFTF	8	Unmodified	_LWGHRFTF_					0	0	0		ENST00000443035.7_1_15:66044937-66048577:-|nuORF	ENST00000443035.7_1_15:66044937-66048577:-|nuORF	ENST00000443035.7_1_15:66044937-66048577:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2674560546875	2	532.277244	1062.53993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.978	1	63.978	63.478	64.478	0								0	0	0	0.38182	1	14573	14573		24.674	15.326	1				12280	6528	8136	8196	16657	16657					0.011166170911337758
LWGLHCVAL	9	Unmodified	_LWGLHCVAL_					0	0	0			REV__ENST00000273221.8_2_3:12940565-12940730:-|nuORF	REV__ENST00000273221.8_2_3:12940565-12940730:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2765808105469	2	506.275855	1010.53716	0.38586	0.00019535	1.5099	0.00076444	1.8958	0.00095979	506.2768085136271	64.447	0.48417	64.515	64.287	64.771	0.068916					27	17	2	0	0	0	0.2796	1	14557	14557		9.3474	0	1	109670	+		12281	11278	8137	8197	16658	16658					0.03231025641969154
LWGLHCVAL	9	Unmodified	_LWGLHCVAL_					0	0	0			REV__ENST00000273221.8_2_3:12940565-12940730:-|nuORF	REV__ENST00000273221.8_2_3:12940565-12940730:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	506.275855	1010.53716	0.38586	0.00019535	1.5099	0.00076444	1.8958	0.00095979	506.2768085136271	64.447	0.48417	64.515	64.287	64.771	0.068916	-0.023453	0.00045304	NaN	9.3474	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109670	+		12282	11278	8137	8197							0.03231025641969154
LWGPGLPNF	9	Unmodified	_LWGPGLPNF_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7662353515625	2	500.766178	999.517802	0.42396	0.0002123	0.32798	0.00016424	0.75194	0.00037654	500.76612436171865	85.742	0.4824	85.742	85.503	85.985	0					36	20	2	0	0	0	0.045114	1	21198	21198		44.407	33.583	1	198550			12283	3013	8138	8198	16659	16659					0.018023926227101583
LWGPGLPNF	9	Unmodified	_LWGPGLPNF_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7662048339844	2	500.766178	999.517802	0.55587	0.00027836	0.51087	0.00025583	1.0667	0.00053419	500.7660685793959	85.72	0.46255	85.745	85.492	85.954	0.025177					31	17	2	0	0	0	0.17247	1	21043	21043		21.747	5.8995	1	192070			12284	3013	8138	8198	16660	16660					0.018023926227101583
LWGTEKEL	8	Unmodified	_LWGTEKEL_					0	0	0		ENST00000515577.1_1_5:126478784-126478904:-|nuORF;ENST00000272418.6_1_2:95766602-95770453:-|nuORF	ENST00000515577.1_1_5:126478784-126478904:-|nuORF	ENST00000515577.1_1_5:126478784-126478904:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7585144042969	2	488.260925	974.507297	0.093589	4.5696E-05	-2.0041	-0.0009785	-1.9105	-0.00093281	488.2599529863641	58.163	0.33987	58.234	58.136	58.476	0.070477					18	12	2	0	0	0	0.3576	1	12683	12683		5.7604	0	1	121510			12285	5915	8139	8199	16661	16661					0.01902365177613774
LWHPLWHLR	9	Unmodified	_LWHPLWHLR_					0	0	0		ENST00000228264.10_1_12:31257084-31257465:+|nuORF	ENST00000228264.10_1_12:31257084-31257465:+|nuORF	ENST00000228264.10_1_12:31257084-31257465:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3233032226562	2	629.353817	1256.69308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.68	1	51.75	51.25	52.25	0.069874								0	0	0	0.2927	1	10689	10689		0.52476	0	1				12286	5807	8140	8200	16662	16662					0.07500232207576119
LWHYYVLR	8	Unmodified	_LWHYYVLR_					0	0	0			REV__ENSG00000158156|ENST00000373884|XKR8	REV__ENSG00000158156|ENST00000373884|XKR8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7982788085938	2	575.313826	1148.6131	0.28674	0.00016497	-3.5764	-0.0020575	-3.2896	-0.0018926	575.311699490073	50.252	0.42721	50.325	50.152	50.579	0.073124					24	14	3	0	0	0	0.53345	1	10269	10269		5.7604	0.028577	1	72903	+		12287	9797	8141	8201	16663	16663					0.04473745813743335
LWILAAVAVYF	11	Unmodified	_LWILAAVAVYF_					0	0	0		XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant;ENSG00000206579|ENST00000327381|XKR4	XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant	XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.5818786621094	3	422.58127	1264.72198	0.51382	0.00021713	0.8538	0.0003608	1.3676	0.00057793	422.58154617160454	88.796	0.73647	88.796	88.432	89.169	0					68	30	3	0	0	0	0.4167	1	22134	22134		0.50596	0.50596	1	122710			12288	5537	8142	8202	16664	16664					0.10020911993342452
LWIMIALA	8	Unmodified	_LWIMIALA_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7776184082031	2	465.777699	929.540846	0.36235	0.00016878	-0.55702	-0.00025945	-0.19467	-9.0671E-05	465.77737994266477	74.463	0.70541	74.463	74.118	74.823	0					45	25	2	0	0	0	0.54081	1	17781	17781		0.79363	0	1	116160			12289	4866	8143	8203	16665	16665					0.07325695415795508
LWIMIALA	8	Unmodified	_LWIMIALA_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.77789306640625	2	465.777699	929.540846	0.28327	0.00013194	-0.41619	-0.00019385	-0.13292	-6.191E-05	465.777423347122	77.696	1.4809	77.696	77.365	78.846	0					115	52	3	0	0	0	0.54081	1	18974	18974		0.79363	0	1	419260			12290	4866	8143	8203	16666	16666					0.07325695415795508
LWIMIALA	8	Unmodified	_LWIMIALA_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.77716064453125	2	465.777699	929.540846	0.21375	9.9561E-05	-0.47134	-0.00021954	-0.25758	-0.00011998	465.77744294207014	74.42	0.95703	74.469	74.071	75.028	0.048546					47	34	2	0	0	0	0.53771	1	17689	17689		2.8892	0	1	173540			12291	4866	8143	8203	16667	16667					0.07325695415795508
LWIMIALA	8	Unmodified	_LWIMIALA_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.77764892578125	2	465.777699	929.540846	0.16637	7.7492E-05	-0.44001	-0.00020495	-0.27364	-0.00012746	465.77743259428183	76.227	0.9752	76.266	76.047	77.022	0.039238					53	40	2	0	0	0	0.53771	1	18122	18122		2.8892	0	1	949910			12292	4866	8143	8203	16668	16668					0.07325695415795508
LWIMIALA	8	Unmodified	_LWIMIALA_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.77777099609375	2	465.777699	929.540846	0.22737	0.0001059	-0.50377	-0.00023464	-0.2764	-0.00012874	465.7773929697119	77.292	1.9772	77.327	77.017	78.994	0.034485					128	74	3	0	0	0	0.53771	1	18811	18811		2.8892	0	1	829610			12293	4866	8143	8203	16669	16669					0.07325695415795508
LWKHYFQN	8	Unmodified	_LWKHYFQN_					0	0	0		ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4	ENST00000605447.1_1_9:136944076-136944538:+|nuORF	ENST00000605447.1_1_9:136944076-136944538:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8115844726562	2	568.287808	1134.56106	0.44891	0.00025511	1.0898	0.00061932	1.5387	0.00087443	568.2879664251342	93.32	0.17352	93.357	93.313	93.486	0.037369					8	6	2	0	0	0	0.3576	1	23385	23385		0.69038	0	1	26212			12294	4282	8144	8204	16670	16670					-0.0008341759998984344
LWKMGFFRRRY	11	Unmodified	_LWKMGFFRRRY_					0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2899780273438	3	520.618724	1558.83434	0.35432	0.00018446	1.4799	0.00077047	1.8342	0.00095494	520.9537187102283	56.064	0.48898	56.064	55.866	56.355	0					28	17	2	0	0	0	0.31101	1	12181	12181		0.45452	0.046251	1	354510			12295	3221	8145	8205	16671	16671					0.07727862518572692
LWKMGFFRRRY	11	Unmodified	_LWKMGFFRRRY_					0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2900390625	3	520.618724	1558.83434	0.21837	0.00011369	1.4131	0.00073569	1.6315	0.00084937	520.6195787834214	56.024	0.51717	56.09	55.817	56.334	0.066452					29	19	2	0	0	0	0.31101	1	12066	12066		0.45452	0.046251	1	312430			12296	3221	8145	8205	16672	16672					0.07727862518572692
LWMRTSSFT	9	Unmodified	_LWMRTSSFT_					0	0	0		nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	nc|ENSG00000143437|P27540-2|ARNT	nc|ENSG00000143437|P27540-2|ARNT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2396850585938	2	564.778959	1127.54336	0.14431	8.1504E-05	-2.2642	-0.0012788	-2.1199	-0.0011973	564.7781586546672	50.81	0.35533	50.81	50.651	51.006	0					17	11	2	0	0	0	0.25579	1	10552	10552		4.3292	0	1	28277			12297	3159	8146	8206	16673	16673					-0.015305009171697748
LWNLWRTT	8	Unmodified	_LWNLWRTT_					0	0	0		ENST00000524227.5_1_8:41519075-41530298:-|nuORF	ENST00000524227.5_1_8:41519075-41530298:-|nuORF	ENST00000524227.5_1_8:41519075-41530298:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.29541015625	2	545.295633	1088.57671	-0.26275	-0.00014328	0.29949	0.00016331	0.036733	2.003E-05	545.2956856176245	21.721	1.1536	21.721	21.5	22.654	0					314	100	4	0	0	0	0.54097	1	2109	2109		0.69038	0	1	288050			12298	6979	8147	8207	16674	16674					0.03596868917043139
LWNVPQLPF	9	Unmodified	_LWNVPQLPF_					0	0	0		ENSG00000179813|ENST00000313851|FAM216B	ENSG00000179813|ENST00000313851|FAM216B	ENSG00000179813|ENST00000313851|FAM216B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3088989257812	2	557.30821	1112.60187	0.23053	0.00012848	0.66386	0.00036998	0.89439	0.00049845	557.3081069147387	73.65	0.55484	73.65	73.422	73.977	0					43	19	3	0	0	0	0.237	1	17514	17514		14.582	0	1	152990			12299	4786	8148	8208	16675	16675					0.05006923719588485
LWQIYTHNHEL	11	Unmodified	_LWQIYTHNHEL_					0	0	0			REV__ENSG00000119900|ENST00000370435|OGFRL1	REV__ENSG00000119900|ENST00000370435|OGFRL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.57977294921875	3	485.245609	1452.715	0.10768	5.2251E-05	-0.37455	-0.00018175	-0.26687	-0.0001295	485.24536299555706	75.987	0.52275	75.987	75.86	76.383	0					50	35	2	0	0	0	0.40904	1	18335	18335		2.2527	0.34635	1	1026300	+		12300	8863	8149	8209	16676	16676					0.006749473748413948
LWQRNLRQF	9	Unmodified	_LWQRNLRQF_					0	0	0		nc|ENSG00000102890|Q96BJ8-3|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-2|ELMO3	nc|ENSG00000102890|Q96BJ8-3|ELMO3	nc|ENSG00000102890|Q96BJ8-3|ELMO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.90350341796875	3	420.903518	1259.68872	-0.18839	-7.9292E-05	0.65294	0.00027483	0.46455	0.00019553	420.9033958729073	43.491	2.0502	43.58	42.887	44.937	0.088924					234	74	5	0	0	0	0.28472	1	8099	8099		8.7454	2.5536	1	765680			12301	1335	8150	8210	16677	16677					0.0692672299401238
LWRLSLHR	8	Unmodified	_LWRLSLHR_					0	0	0		ENST00000354884.8_1_11:47436368-47436683:+|nuORF	ENST00000354884.8_1_11:47436368-47436683:+|nuORF	ENST00000354884.8_1_11:47436368-47436683:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.82470703125	2	540.824892	1079.63523	0.049015	2.6508E-05	-0.11722	-6.3394E-05	-0.068202	-3.6885E-05	540.82477899195	31.279	0.58599	31.352	31.129	31.715	0.073782					50	29	3	0	0	0	0.53423	1	4547	4547		5.2307	0	1	39822			12302	6115	8151	8211	16678	16678					0.0985997028217298
LWRLSLHR	8	Unmodified	_LWRLSLHR_					0	0	0		ENST00000354884.8_1_11:47436368-47436683:+|nuORF	ENST00000354884.8_1_11:47436368-47436683:+|nuORF	ENST00000354884.8_1_11:47436368-47436683:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	540.824892	1079.63523	-0.07632	-4.1275E-05	-0.29259	-0.00015824	-0.36891	-0.00019951	540.8245711362199	31.531	0.49495	31.531	31.236	31.731	0	0.089129	-0.0001544	NaN	5.2307	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19564			12303	6115	8151	8211							0.0985997028217298
LWRRSYNV	8	Unmodified	_LWRRSYNV_					0	0	0		ENSG00000172331|ENST00000344924|BPGM	ENSG00000172331|ENST00000344924|BPGM	ENSG00000172331|ENST00000344924|BPGM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2988891601562	2	547.298707	1092.58286	0.51885	0.00028397	0.038699	2.118E-05	0.55755	0.00030515	547.2985765832104	100.63	0.45261	100.68	100.41	100.87	0.042839					44	26	2	0	0	0	0.50159	1	25581	25581		12.532	0	1	69139			12304	4492	8152	8212	16679	16679					0.04027387148562411
LWSFCLAIF	9	Carbamidomethyl (C)	_LWSFC(Carbamidomethyl (C))LAIF_	LWSFC(1)LAIF		LWSFC(64)LAIF		0	1	0		ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7977905273438	2	578.79662	1155.57869	0.50584	0.00029278	-0.009117	-5.2769E-06	0.49672	0.0002875	578.797655369969	91.721	0.60072	91.721	91.269	91.869	0					33	22	2	0	0	0	0.012597	2	23016	23016;23066		63.563	11.933	1	432750			12305	2096	8153	8213	16680;16681	16680	4				0.007121616106132933
LWSFCLAIF	9	Carbamidomethyl (C)	_LWSFC(Carbamidomethyl (C))LAIF_	LWSFC(1)LAIF		LWSFC(64)LAIF		0	1	0		ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7991943359375	2	578.79662	1155.57869	0.40556	0.00023474	0.54907	0.0003178	0.95463	0.00055254	578.7973230489505	91.684	0.57758	91.72	91.308	91.886	0.035446					51	20	4	0	0	0	0.012597	1	22851	22851		63.563	9.7301	1	419400			12306	2096	8153	8213	16682	16682	4				0.007121616106132933
LWSQAMASWGS	11	Unmodified	_LWSQAMASWGS_					0	0	0			REV__ENST00000454651.2_1_1:201476456-201502658:+|nuORF	REV__ENST00000454651.2_1_1:201476456-201502658:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3323974609375	2	612.279323	1222.54409	0.32121	0.00019667	1.4137	0.00086556	1.7349	0.0010622	612.2802239520338	78.442	0.39498	78.472	78.317	78.712	0.030159					24	13	2	0	0	0	0.31042	1	18789	18789		6.2058	1.8765	1	168790	+		12307	11940	8154	8214	16683	16683					-0.05827706268132715
LWSSFHNTVA	10	Unmodified	_LWSSFHNTVA_					0	0	0			REV__ENSG00000256188|ENST00000539585|TAS2R30	REV__ENSG00000256188|ENST00000539585|TAS2R30	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8037109375	2	581.288005	1160.56146	0.13658	7.9395E-05	-0.54126	-0.00031463	-0.40468	-0.00023523	581.2860852114445	106.05	0.082504	106.05	106.03	106.11	0					9	7	2	0	0	0	0.31811	1	27331	27331		2.9952	0.26005	1	24596	+		12308	11094	8155	8215	16684	16684					-0.012400426707927181
LWTCIKMGF	9	Unmodified	_LWTCIKMGF_					0	0	0		ENST00000471642.6_1_1:155708069-155708207:+|nuORF	ENST00000471642.6_1_1:155708069-155708207:+|nuORF	ENST00000471642.6_1_1:155708069-155708207:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7772827148438	2	549.777373	1097.54019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.21	1	103.25	102.75	103.75	0.040916								0	0	0	0.2428	1	26355	26355		10.824	2.0785	1				12309	6673	8156	8216	16685	16685					-0.0046746729553888144
LWTDELEWN	9	Unmodified	_LWTDELEWN_					0	0	0			REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF	REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.278564453125	2	603.277303	1204.54005	0.61844	0.00037309	1.125	0.00067867	1.7434	0.0010518	603.27784573529	88.381	0.63644	88.381	88.181	88.817	0					60	25	4	0	0	0	0.10833	2	22029	21981;22029		30.637	7.9003	1	538570	+		12310	11787	8157	8217	16686;16687	16687					-0.05403472490161221
LWTDELEWN	9	Unmodified	_LWTDELEWN_					0	0	0			REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF	REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2782592773438	2	603.277303	1204.54005	0.59224	0.00035728	1.0025	0.0006048	1.5948	0.00096208	603.2776575213809	88.378	0.629	88.408	88.167	88.796	0.030037					66	25	4	0	0	0	0.15282	2	21863	21817;21863		24.021	6.9077	1	410520	+		12311	11787	8157	8217	16688;16689	16689					-0.05403472490161221
LWTGFWPA	8	Unmodified	_LWTGFWPA_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.25604248046875	2	489.247621	976.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.542	1	38.542	38.042	39.042	0								0	0	0	0.38822	1	6853	6853		5.2307	0	1				12312	3027	8158	8218	16690	16690					-0.008492789230558628
LWTLLILKWFR	11	Unmodified	_LWTLLILKWFR_					0	0	0			REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF	REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.30902099609375	3	496.974502	1487.90168	0.3581	0.00017797	0.40959	0.00020356	0.76769	0.00038152	496.9745711053093	107.43	0.37108	107.46	107.27	107.64	0.025711					111	37	4	0	0	0	0.41713	1	27538	27538		0.40827	0.31342	1	677320	+		12313	11996	8159	8219	16691	16691					0.17724216001170134
LWVFDSTCNIL	11	Unmodified	_LWVFDSTCNIL_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5536804199219	3	437.553163	1309.63766	-0.23093	-0.00010104	1.0372	0.00045381	0.80624	0.00035277	437.5537750589123	40.24	1.437	40.33	39.858	41.295	0.089645					116	55	3	0	0	0	0.40545	1	7168	7168		3.0723	0.44103	1	133730	+		12314	9340	8160	8220	16692	16692					-0.004774068856704616
LWVGERMP	8	Unmodified	_LWVGERMP_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2625732421875	2	494.257662	986.500772	-0.08521	-4.2116E-05	3.9541	0.0019543	3.8688	0.0019122	494.26100690605756	45.343	0.57698	45.343	45.205	45.782	0					25	19	2	0	0	0	0.54081	1	8922	8922		0.79363	0	1	33609			12315	1897	8161	8221	16693	16693					0.006981487452662805
LWWIFKLT	8	Unmodified	_LWWIFKLT_					0	0	0			REV__ENST00000446668.5_1_3:51424348-51426517:+|nuORF	REV__ENST00000446668.5_1_3:51424348-51426517:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2503051757812	2	553.823495	1105.63244	0.27991	0.00015502	2.1365	0.0011832	2.4164	0.0013383	553.8245818097826	21.316	0.18684	21.418	21.254	21.441	0.10178					23	19	2	0	0	0	0.3576	1	1707	1707		0.79363	0	1	12993	+		12316	11908	8162	8222	16694	16694					0.08384702104649477
LWYLSEKQM	9	Unmodified	_LWYLSEKQM_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.302001953125	2	599.302267	1196.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.224	1	99.224	98.724	99.724	0								0	0	0	0.29233	1	25309	25309		0.6015	0	1		+		12317	9138	8163	8223	16695	16695					-0.0004506108589339419
LWYSLTPF	8	Unmodified	_LWYSLTPF_					0	0	0			REV__ENST00000519948.3_1_12:74932986-74933157:+|nuORF	REV__ENST00000519948.3_1_12:74932986-74933157:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2839965820312	2	513.768386	1025.52222	0.28636	0.00014712	-0.39119	-0.00020098	-0.10483	-5.3859E-05	513.7680582308175	56.314	0.46537	56.314	56.162	56.627	0					24	16	2	0	0	0	0.49441	1	12284	12284		13.508	1.8676	1	115900	+		12318	12291	8164	8224	16696	16696					0.010478570456143643
LWYTPAPN	8	Unmodified	_LWYTPAPN_					0	0	0		ENST00000527304.1_1_11:65380411-65381302:-|nuORF	ENST00000527304.1_1_11:65380411-65381302:-|nuORF	ENST00000527304.1_1_11:65380411-65381302:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7830505371094	2	481.242535	960.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.697	1	92.697	92.197	93.197	0								0	0	0	0.38822	1	23324	23324		0.79363	0	1				12319	7003	8165	8225	16697	16697					-0.011298866483002712
LWYTPAPN	8	Unmodified	_LWYTPAPN_					0	0	0		ENST00000527304.1_1_11:65380411-65381302:-|nuORF	ENST00000527304.1_1_11:65380411-65381302:-|nuORF	ENST00000527304.1_1_11:65380411-65381302:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2408752441406	2	481.242535	960.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.66	1	105.66	105.16	106.16	0								0	0	0	0.38822	1	27223	27223		0.79363	0	1				12320	7003	8165	8225	16698	16698					-0.011298866483002712
LWYTPAPN	8	Unmodified	_LWYTPAPN_					0	0	0		ENST00000527304.1_1_11:65380411-65381302:-|nuORF	ENST00000527304.1_1_11:65380411-65381302:-|nuORF	ENST00000527304.1_1_11:65380411-65381302:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.3365478515625	2	481.242535	960.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.17	1	104.21	103.71	104.71	0.03791								0	0	0	0.38822	1	26625	26625		0.79363	0	1				12321	7003	8165	8225	16699	16699					-0.011298866483002712
LWYVYQFYL	9	Unmodified	_LWYVYQFYL_					0	0	0			REV__ENSG00000135926|ENST00000258412|TMBIM1	REV__ENSG00000135926|ENST00000258412|TMBIM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.8303833007812	2	647.828975	1293.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.55	1	113.57	113.07	114.07	0.013817								0	0	0	0.29233	1	28957	28957		0.6015	0.076735	1		+		12322	9225	8166	8226	16700	16700					0.008320596882867903
LYAADSFSCLL	11	Carbamidomethyl (C)	_LYAADSFSC(Carbamidomethyl (C))LL_	LYAADSFSC(1)LL		LYAADSFSC(42)LL		0	1	0			REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.788330078125	2	630.302464	1258.59037	0.38144	0.00024042	-0.35312	-0.00022257	0.028323	1.7852E-05	630.3022751444391	70.307	0.50479	70.307	70.142	70.647	0					46	18	3	0	0	0	0.1251	1	16472	16472		41.84	12.758	1	550030	+		12323	10280	8167	8227	16701	16701	18				-0.028576861566989464
LYAADSFSCLL	11	Carbamidomethyl (C)	_LYAADSFSC(Carbamidomethyl (C))LL_	LYAADSFSC(1)LL		LYAADSFSC(48)LL		0	1	0			REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.7880859375	2	630.302464	1258.59037	0.49471	0.00031181	-0.57112	-0.00035998	-0.076412	-4.8163E-05	630.3023025919412	70.218	0.54179	70.278	70.128	70.67	0.060562					45	21	3	0	0	0	0.090663	2	16364	16313;16364		47.749	24.6	1	309840	+		12324	10280	8167	8227	16702;16703	16703	18				-0.028576861566989464
LYAALTALL	9	Unmodified	_LYAALTALL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7919006347656	2	474.791861	947.569169	0.19325	9.1755E-05	-0.0070192	-3.3327E-06	0.18623	8.8422E-05	474.79176795774265	91.72	0.67865	91.72	91.458	92.136	0					60	25	4	0	0	0	0.17247	1	23135	23135		21.747	4.8044	1	1042000			12325	2364	8168	8228	16704	16704					0.09328716596746744
LYACDSKSEF	10	Unmodified	_LYACDSKSEF_					0	0	0		nc|ENSG00000260314|P22897-2|MRC1;ENSG00000260314|ENST00000569591|MRC1	nc|ENSG00000260314|P22897-2|MRC1	nc|ENSG00000260314|P22897-2|MRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7586059570312	2	581.757889	1161.50123	0.65736	0.00038242	0.72007	0.00041891	1.3774	0.00080133	581.7583312820988	93.56	0.93486	93.56	93.006	93.941	0					62	37	2	0	0	0	0.38912	1	23649	23649		13.042	3.6593	1	168010			12326	5712	8169	8229	16705	16705					-0.0730652111622021
LYACDSKSEF	10	Unmodified	_LYACDSKSEF_					0	0	0		nc|ENSG00000260314|P22897-2|MRC1;ENSG00000260314|ENST00000569591|MRC1	nc|ENSG00000260314|P22897-2|MRC1	nc|ENSG00000260314|P22897-2|MRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7586059570312	2	581.757889	1161.50123	0.69137	0.00040221	0.90063	0.00052395	1.592	0.00092616	581.7583640557255	93.48	0.92526	93.517	93.117	94.043	0.037369					82	43	3	0	0	0	0.34138	1	23498	23498		18.146	4.2403	1	129410			12327	5712	8169	8229	16706	16706					-0.0730652111622021
LYADMSVWWA	10	Unmodified	_LYADMSVWWA_					0	0	0			REV__nc|ENSG00000290724|O14609|XKRY	REV__nc|ENSG00000290724|O14609|XKRY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2847290039062	2	621.286617	1240.55868	0.45459	0.00028243	-2.0443	-0.0012701	-1.5897	-0.00098766	621.2846836043456	80.179	1.696	80.179	79.765	81.461	0					168	58	5	0	0	0	0.17902	1	19547	19547		36.127	9.2434	1	4028600	+		12328	12922	8170	8230	16707	16707					-0.051976341199861054
LYADPYGLL	9	Unmodified	_LYADPYGLL_					0	0	0		nc|ENSG00000277363|Q9C0H9-2|SRCIN1;SRCIN1|p.E1146Rfs*2|1|0.12|ENSG00000277363|chr17:38533414-38533414|T/-|frameshift_variant;ENSG00000277363|ENST00000617146|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.788330078125	2	512.771126	1023.5277	0.42677	0.00021883	-0.21257	-0.000109	0.2142	0.00010983	512.7707785403439	93.801	0.8179	93.838	93.581	94.399	0.037369					55	37	2	0	0	0	0.20367	1	23656	23656		18.135	7.3111	1	912220			12329	5755	8171	8231	16708	16708					0.016875358374250027
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.284912109375	2	549.284931	1096.55531	0.49171	0.00027009	-0.61229	-0.00033632	-0.12058	-6.6233E-05	549.284706732022	47.367	1.0067	47.367	47.116	48.123	0					86	34	4	0	0	0	3.5266E-07	2	9505	9505;9554		143.91	105.73	1	945240			12330	4820	8172	8232	16709;16710	16709					0.010894390976773138
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2849731445312	2	549.284931	1096.55531	0.52182	0.00028663	-0.39794	-0.00021858	0.12387	6.8042E-05	549.2847143352898	47.289	0.82982	47.372	47.151	47.981	0.083096					58	32	2	0	0	0	1.4931E-05	2	9384	9340;9384		132.38	94.204	1	801560			12331	4820	8172	8232	16711;16712	16712					0.010894390976773138
LYAEFVVLF	9	Unmodified	_LYAEFVVLF_					0	0	0		ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3	ENSG00000163812|ENST00000424952|ZDHHC3	ENSG00000163812|ENST00000424952|ZDHHC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2843017578125	2	550.804968	1099.59538	0.63743	0.0003511	-0.56078	-0.00030888	0.076648	4.2218E-05	550.8050362162011	93.304	0.61256	93.304	93.157	93.77	0					28	23	2	0	0	0	0.22289	1	23570	23570		18.135	1.1927	1	47403			12332	3949	8173	8233	16713	16713					0.04956985768217237
LYAEYVSKEF	10	Unmodified	_LYAEYVSKEF_					0	0	0			REV__PCDH7|p.D316Y|1|0.17|ENSG00000169851|chr4:30722368-30722368|G/T|missense_variant	REV__PCDH7|p.D316Y|1|0.17|ENSG00000169851|chr4:30722368-30722368|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.8769836425781	3	416.876411	1247.6074	0.55369	0.00023082	0.85739	0.00035743	1.4111	0.00058824	416.87655616037864	62.302	0.9086	62.302	61.974	62.883	0					61	33	3	0	0	0	0.44253	1	14058	14058		6.1918	0.40842	1	244200	+		12333	12952	8174	8234	16714	16714					-0.006494422792457044
LYAFTRQKF	9	Unmodified	_LYAFTRQKF_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.793212890625	2	587.324391	1172.63423	0.72316	0.00042473	-0.2536	-0.00014895	0.46956	0.00027578	587.3240920228244	55.182	0.42578	55.182	55.015	55.441	0					30	15	3	0	0	0	0.25051	1	11928	11928		7.9102	1.187	1	137050			12334	4483	8175	8235	16715	16715					0.05481711122592969
LYAFTRQKF	9	Unmodified	_LYAFTRQKF_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	587.324391	1172.63423	0.82852	0.00048661	-0.78172	-0.00045913	0.046797	2.7485E-05	587.323811560292	55.167	0.40196	55.232	55.089	55.491	0.065128	0.024828	-0.00040304	NaN	7.9102	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141580			12335	4483	8175	8235							0.05481711122592969
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(100)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7922973632812	2	586.792066	1171.56958	0.56404	0.00033098	-0.34607	-0.00020307	0.21797	0.0001279	586.791912110087	53.558	0.42502	53.558	53.335	53.76	0					53	16	4	0	0	0	0.0039507	2	11406	11364;11406		103.82	47.89	1	661560			12336	333	8176	8236	16716;16717	16717		14			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(140)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.792236328125	2	586.792066	1171.56958	0.71981	0.00042238	-0.43743	-0.00025668	0.28238	0.0001657	586.7917743183896	53.958	0.71996	53.958	53.76	54.48	0					72	26	4	0	0	0	0.00021732	3	11506	11506;11550;11614		136.39	78.67	1	660080			12337	333	8176	8236	16718;16719;16720	16718		14			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(150)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7916259765625	2	586.792066	1171.56958	0.52737	0.00030946	-0.31231	-0.00018326	0.21505	0.00012619	586.7917522566954	56.111	3.3455	56.111	54.682	58.027	0					233	121	3	0	0	0	1.0657E-05	4	12208	12158;12208;12264;12335		148.27	89.589	1	1212800			12338	333	8176	8236	16721;16722;16723;16724	16722		14			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(97)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7923583984375	2	586.792066	1171.56958	0.77163	0.00045279	-0.68272	-0.00040062	0.088909	5.2171E-05	586.7918018072772	53.535	0.40406	53.6	53.385	53.789	0.06543					63	19	5	0	0	0	0.0043442	2	11267	11221;11267		96.936	45.44	1	648870			12339	333	8176	8236	16725;16726	16726		14			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(110)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7924194335938	2	586.792066	1171.56958	0.8323	0.00048839	-0.30307	-0.00017784	0.52924	0.00031055	586.7919146683937	53.88	0.61021	53.945	53.789	54.399	0.065128					58	22	3	0	0	0	0.002259	2	11358	11358;11401		114.19	66.438	1	587790			12340	333	8176	8236	16727;16728	16727		14			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(160)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7922973632812	2	586.792066	1171.56958	0.61148	0.00035881	-0.51724	-0.00030351	0.094238	5.5298E-05	586.7916410200191	56.06	2.7778	56.126	55.354	58.132	0.066448					215	104	3	0	0	0	8.8922E-09	5	11975	11928;11975;12020;12123;12186		160.69	100.62	1	1072400			12341	333	8176	8236	16729;16730;16731;16732;16733	16730		14			-0.009342317456912497
LYANMFERL	9	Unmodified	_LYANMFERL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7951049804688	2	578.794609	1155.57467	0.61799	0.00035769	-0.2346	-0.00013578	0.38339	0.00022191	578.794518943788	64.565	1.0161	64.565	64.382	65.398	0					73	36	3	0	0	0	0.0039507	2	14748	14748;14800		103.82	71.518	1	547860			12342	333	8176	8237	16734;16735	16734					0.003100721169175813
LYANMFERL	9	Unmodified	_LYANMFERL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7947998046875	2	578.794609	1155.57467	0.55326	0.00032022	0.02793	1.6166E-05	0.58119	0.00033639	578.7945552784031	64.517	0.81411	64.586	64.374	65.188	0.068916					61	30	3	0	0	0	0.0044228	2	14587	14587;14635		93.938	61.633	1	518740			12343	333	8176	8237	16736;16737	16736					0.003100721169175813
LYARLFDFL	9	Unmodified	_LYARLFDFL_					0	0	0		ENST00000595191.1_1_19:8614980-8615536:-|nuORF;ENST00000600825.1_1_19:8612859-8615196:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F	ENST00000595191.1_1_19:8614980-8615536:-|nuORF	ENST00000595191.1_1_19:8614980-8615536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3206176757812	2	579.321317	1156.62808	0.82721	0.00047922	-1.6153	-0.0009358	-0.78813	-0.00045658	579.3200946491395	84.831	0.48157	84.831	84.651	85.132	0					42	19	3	0	0	0	0.012041	1	20941	20941		63.961	38.97	1	616060			12344	3101	8177	8238	16738	16738					0.05603192891089748
LYARLFDFL	9	Unmodified	_LYARLFDFL_					0	0	0		ENST00000595191.1_1_19:8614980-8615536:-|nuORF;ENST00000600825.1_1_19:8612859-8615196:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F	ENST00000595191.1_1_19:8614980-8615536:-|nuORF	ENST00000595191.1_1_19:8614980-8615536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3206176757812	2	579.321317	1156.62808	0.70521	0.00040854	-1.5616	-0.00090466	-0.85638	-0.00049612	579.3202034365112	84.799	0.40006	84.822	84.691	85.091	0.023125					42	17	4	0	0	0	0.0081278	1	20770	20770		72.968	47.977	1	918640			12345	3101	8177	8238	16739	16739					0.05603192891089748
LYATAWLAL	9	Unmodified	_LYATAWLAL_					0	0	0			REV__ENSG00000075073|ENST00000373306|TACR2	REV__ENSG00000075073|ENST00000373306|TACR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.287353515625	2	511.289485	1020.56442	0.32248	0.00016488	-3.7457	-0.0019151	-3.4232	-0.0017502	511.28785898436365	52.635	0.59289	52.702	52.493	53.085	0.067169					50	23	3	0	0	0	0.25979	1	11008	11008		11.64	0	1	156840	+		12346	8189	8178	8239	16740	16740					0.05495832453971161
LYATIEYLL	9	Unmodified	_LYATIEYLL_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8175048828125	2	549.807708	1097.60086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.59	1	104.62	104.12	105.12	0.034004								0	0	0	0.2722	1	26741	26741		4.756	0.42677	1		+		12347	10016	8179	8240	16741	16741					0.05596664560039244
LYCGKCHN	8	Unmodified	_LYCGKCHN_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.82806396484375	2	469.204573	936.394592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.49	1	103.53	103.03	104.03	0.03791								0	0	0	0.38822	1	26435	26435		0.79363	0	1				12348	7567	8180	8241	16742	16742					-0.0761493009173364
LYCPHVSPPQ	10	Unmodified	_LYCPHVSPPQ_					0	0	0			REV__nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	REV__nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.770263671875	2	570.778959	1139.54336	0.31278	0.00017853	-0.45635	-0.00026048	-0.14357	-8.1946E-05	570.7787144814849	62.202	0.87756	62.276	61.953	62.83	0.073421					76	31	3	0	0	0	0.33001	1	13846	13846		19.362	1.2156	1	572720	+		12349	9950	8181	8242	16743	16743					-0.02082500917163088
LYCRAWRQA	9	Unmodified	_LYCRAWRQA_					0	0	0		CAMSAP3|p.P438Rfs*125|1|0.61|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant;ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	CAMSAP3|p.P438Rfs*125|1|0.61|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant	CAMSAP3|p.P438Rfs*125|1|0.61|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.264404296875	2	583.798017	1165.58148	0.50375	0.00029409	-1.9109	-0.0011156	-1.4071	-0.00082148	583.7966414080603	88.831	0.39063	88.831	88.663	89.053	0					24	15	2	0	0	0	0.2491	1	22205	22205		8.5933	0.68312	1	115240			12350	103	8182	8243	16744	16744					0.005314297881568564
LYCRRWRYWE	10	Unmodified	_LYCRRWRYWE_					0	0	0		ENST00000299314.11_1_12:102159966-102161843:-|nuORF	ENST00000299314.11_1_12:102159966-102161843:-|nuORF	ENST00000299314.11_1_12:102159966-102161843:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.30023193359375	3	510.918951	1529.73502	0.31408	0.00016047	-1.367	-0.00069842	-1.0529	-0.00053795	511.2519426919711	59.741	0.65278	59.741	59.558	60.211	0					28	24	2	0	0	0	0.31851	1	13241	13241		0.77653	0.27058	1	139750			12351	5969	8183	8244	16745	16745					-0.008655801661916485
LYCVDSGFRL	10	Unmodified	_LYCVDSGFRL_					0	0	0			REV__ENST00000342947.7_1_7:24738176-24738260:-|nuORF	REV__ENST00000342947.7_1_7:24738176-24738260:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.77685546875	2	586.792066	1171.56958	0.77163	0.00045279	-0.68272	-0.00040062	0.088909	5.2171E-05	586.7918018072772	53.535	0.40406	53.6	53.385	53.789	0.06543					63	19	5	0	0	0	0.41688	1	11197	11197		10.074	0	1	648870	+		12352	11471	8184	8245	16746	16746					-0.009342317456912497
LYDAELSQM	9	Oxidation (M)	_LYDAELSQM(Oxidation (M))_		LYDAELSQM(1)		LYDAELSQM(56)	0	0	1		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2450561523438	2	543.244615	1084.47468	0.20979	0.00011397	0.17063	9.2695E-05	0.38043	0.00020666	543.2446608986204	48.941	0.42219	48.941	48.801	49.223	0					25	14	2	0	0	0	0.023873	1	9994	9994		55.503	38.56	1	183970		+	12353	215	8185	8246	16747	16747		6			-0.06418210007564085
LYDAELSQM	9	Oxidation (M)	_LYDAELSQM(Oxidation (M))_		LYDAELSQM(1)		LYDAELSQM(42)	0	0	1		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2446899414062	2	543.244615	1084.47468	0.14946	8.1192E-05	0.084432	4.5867E-05	0.23389	0.00012706	543.2445942150052	48.877	0.53165	48.954	48.75	49.282	0.076607					26	18	2	0	0	0	0.056368	1	9837	9837		41.956	25.013	1	142410		+	12354	215	8185	8246	16748	16748		6			-0.06418210007564085
LYDALEHHDF	10	Unmodified	_LYDALEHHDF_					0	0	0			REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.290283203125	2	630.288202	1258.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.747	1	75.791	75.291	76.291	0.044037								0	0	0	0.24807	1	18006	18006		24.021	8.1734	1		+		12355	8502	8186	8247	16749	16749					-0.05708667741623685
LYDDIPLLL	9	Unmodified	_LYDDIPLLL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.779296875	2	537.807708	1073.60086	0.35503	0.00019094	-0.13194	-7.0959E-05	0.22309	0.00011998	537.807496686308	95.973	0.43422	95.973	95.78	96.214	0					58	22	3	0	0	0	0.15192	1	24359	24359		32.117	13.982	1	338640	+		12356	9733	8187	8248	16750	16750					0.06700664560048608
LYDDIPLLL	9	Unmodified	_LYDDIPLLL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7794189453125	2	537.807708	1073.60086	0.51071	0.00027466	-0.11876	-6.3868E-05	0.39195	0.00021079	537.8075622066743	95.914	0.47173	95.954	95.743	96.215	0.039772					49	22	3	0	0	0	0.164	1	24185	24185		30.225	7.0764	1	283540	+		12357	9733	8187	8248	16751	16751					0.06700664560048608
LYDEDLKSKE	10	Unmodified	_LYDEDLKSKE_					0	0	0			REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2950439453125	2	620.3088	1238.60305	0.04305	2.6704E-05	-0.86017	-0.00053357	-0.81712	-0.00050686	620.3081090389188	96.825	0.9913	96.825	96.447	97.438	0					87	46	2	0	0	0	0.45627	1	24481	24481		3.5965	0.60125	1	335730	+		12358	10807	8188	8249	16752	16752					-0.006709514928161298
LYDEDLKSKE	10	Unmodified	_LYDEDLKSKE_					0	0	0			REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3082275390625	2	620.3088	1238.60305	-0.026483	-1.6428E-05	-0.91869	-0.00056987	-0.94517	-0.0005863	620.3082910165805	94.754	0.67159	94.792	94.5	95.171	0.038094					60	27	3	0	0	0	0.27736	1	23819	23819		24.991	0.97039	1	271510	+		12359	10807	8188	8249	16753	16753					-0.006709514928161298
LYDELRNLL	9	Unmodified	_LYDELRNLL_					0	0	0		MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S	MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.3300170898438	2	574.819138	1147.62372	0.40316	0.00023174	0.10648	6.1207E-05	0.50964	0.00029295	574.8190792210307	70.946	1.3806	70.946	70.618	71.998	0					61	48	2	0	0	0	0.20194	1	16782	16782		24.021	2.4836	1	182790			12360	2470	8189	8250	16754	16754					0.055816836775193224
LYDERMEDSL	10	Unmodified	_LYDERMEDSL_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.1918029785156	3	424.192182	1269.55472	0.15726	6.6709E-05	-2.1003	-0.00089093	-1.943	-0.00082422	424.19142640111863	61.932	0.50248	62.005	61.861	62.364	0.073421					33	20	3	0	0	0	0.42184	1	13833	13833		9.544	1.3884	1	125800	+		12361	8848	8190	8251	16755	16755					-0.06927768404352719
LYDEVCKKL	9	Unmodified	_LYDEVCKKL_					0	0	0			REV__ENST00000484264.1_1_4:1746256-1746676:+|nuORF	REV__ENST00000484264.1_1_4:1746256-1746676:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7971801757812	2	555.796817	1109.57908	0.33152	0.00018426	-1.7022	-0.00094607	-1.3707	-0.00076181	555.7970420169582	46.064	0.47272	46.15	45.954	46.426	0.085617					24	16	2	0	0	0	0.30397	1	9034	9034		6.2058	0.47393	1	37672	+		12362	7989	8191	8252	16756	16756					0.028675365398157737
LYDFYYHGF	9	Unmodified	_LYDFYYHGF_					0	0	0			REV__ENST00000442692.2_1_11:68845982-68853340:+|nuORF	REV__ENST00000442692.2_1_11:68845982-68853340:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5150451660156	3	408.850197	1223.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.585	1	76.585	76.085	77.085	0								0	0	0	0.28073	1	18420	18420		2.9952	1.8019	1		+		12363	9882	8192	8253	16757	16757					-0.07406249793689312
LYDIILKNF	9	Unmodified	_LYDIILKNF_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.8292236328125	2	569.828975	1137.6434	0.30049	0.00017123	0.043071	2.4543E-05	0.34356	0.00019577	569.8289461590048	74.368	1.4659	74.368	74.095	75.561	0					148	54	5	0	0	0	5.2227000000000005E-24	4	17746	17696;17746;17953;18072		223.06	88.764	1	4855700			12364	1069	8193	8254	16758;16759;16760;16761	16759					0.08008059688290814
LYDIILKNF	9	Unmodified	_LYDIILKNF_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8291625976562	2	569.828975	1137.6434	0.3912	0.00022292	-0.048291	-2.7518E-05	0.34291	0.0001954	569.8288934700764	74.292	1.4728	74.341	74.101	75.574	0.048538					146	53	5	0	0	0	5.2227000000000005E-24	3	17568	17518;17568;17884		223.06	88.764	1	3884500			12365	1069	8193	8254	16762;16763;16764	16763					0.08008059688290814
LYDKGKSLA	9	Unmodified	_LYDKGKSLA_					0	0	0			REV__ENSG00000094975|ENST00000263688|SUCO	REV__ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.781982421875	2	497.782025	993.549496	0.31165	0.00015513	-0.48233	-0.0002401	-0.17069	-8.4964E-05	497.7817592253354	38.952	0.2383	39.039	38.939	39.178	0.086884					10	8	2	0	0	0	0.33704	1	6886	6886		1.8442	0	1	26058	+		12366	8338	8194	8255	16765	16765					0.05246340585995313
LYDLDKHQE	9	Unmodified	_LYDLDKHQE_					0	0	0		tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.784912109375	2	580.782753	1159.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.8	1	105.83	105.33	106.33	0.029739								0	0	0	0.25692	1	27080	27080		7.9102	1.7044	1				12367	13747	8195	8256	16766	16766					-0.022440701158984666
LYDLDLGKF	9	Unmodified	_LYDLDLGKF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2899780273438	2	542.289682	1082.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.645	1	70.645	70.145	71.145	0								0	0	0	0.0027682	1	16602	16602		80.676	44.549	1				12368	1110	8196	8257	16767	16767					0.026832073831883463
LYDLDLGKF	9	Unmodified	_LYDLDLGKF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2889404296875	2	542.289682	1082.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.812	1	70.812	70.312	71.312	0								0	0	0	0.026575	1	16653	16653		59.368	28.732	1				12369	1110	8196	8257	16768	16768					0.026832073831883463
LYDLDLGKF	9	Unmodified	_LYDLDLGKF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2901000976562	2	542.289682	1082.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.609	1	70.669	70.169	71.169	0.060562								0	0	0	0.005702	1	16438	16438		71.708	38.922	1				12370	1110	8196	8257	16769	16769					0.026832073831883463
LYDLVTEKM	9	Oxidation (M)	_LYDLVTEKM(Oxidation (M))_		LYDLVTEKM(1)		LYDLVTEKM(55)	0	0	1		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.285888671875	2	564.286282	1126.55801	0.38346	0.00021638	-0.68496	-0.00038651	-0.3015	-0.00017013	564.2856544528184	47.263	0.31311	47.263	47.087	47.4	0					23	10	3	0	0	0	0.024248	1	9489	9489		55.235	27.606	1	119440			12371	2133	8197	8258	16770	16770		131			-0.00020473559698075405
LYDLVTEKM	9	Oxidation (M)	_LYDLVTEKM(Oxidation (M))_					0	0	1		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	564.286282	1126.55801	0.37253	0.00021022	-0.34636	-0.00019545	0.026174	1.477E-05	564.2859165670949	47.155	0.33582	47.238	47.095	47.431	0.083092	-0.012801	0.00021211	NaN	55.235	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88322			12372	2133	8197	8258				131			-0.00020473559698075405
LYDLWEFY	8	Unmodified	_LYDLWEFY_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1;nc|ENSG00000105983|Q8WVP7-2|LMBR1;ENST00000434503.5_1_7:156480878-156685794:-|nuORF	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7493896484375	2	574.768583	1147.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.684	1	80.684	80.184	81.184	0								0	0	0	0.38822	1	19672	19672		6.3541	1.1234	1				12373	1499	8198	8259	16771	16771					-0.04524768025180492
LYDLWEFY	8	Unmodified	_LYDLWEFY_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1;nc|ENSG00000105983|Q8WVP7-2|LMBR1;ENST00000434503.5_1_7:156480878-156685794:-|nuORF	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8269653320312	2	574.768583	1147.52261	0.53289	0.00030629	3.4683	0.0019935	4.0012	0.0022997	575.272782212018	70.416	0.13401	70.477	70.425	70.559	0.060562					5	4	2	0	0	0	0.35759	1	16388	16388		10.183	0	1	21954			12374	1499	8198	8259	16772	16772					-0.04524768025180492
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.3078002929688	2	524.307875	1046.6012	0.36351	0.00019059	0.048989	2.5685E-05	0.4125	0.00021628	524.3078341011245	59.867	0.87744	59.867	59.656	60.533	0					66	32	3	0	0	0	0.010553	2	13300	13300;13352		65.474	36.392	1	553210			12375	5132	8199	8260	16773;16774	16773					0.07976084279880524
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.3079833984375	2	524.307875	1046.6012	0.08039	4.2149E-05	0.5516	0.00028921	0.63199	0.00033136	524.3079341638986	59.783	0.74958	59.855	59.647	60.397	0.072338					67	28	4	0	0	0	0.02143	3	13179	13127;13179;13227		57.249	33.229	1	538230			12376	5132	8199	8260	16775;16776;16777	16776					0.07976084279880524
LYDRETYP	8	Unmodified	_LYDRETYP_					0	0	0		SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7523193359375	2	528.753464	1055.49238	0.22281	0.00011781	-2.3523	-0.0012438	-2.1295	-0.001126	528.7523251703457	59.499	0.36383	59.499	59.336	59.7	0					24	14	2	0	0	0	0.50159	1	13243	13243		12.532	3.1841	1	151120			12377	1266	8200	8261	16778	16778					-0.03315126690381476
LYDSETKNANS	11	Unmodified	_LYDSETKNANS_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2859497070312	2	621.285857	1240.55716	0.45459	0.00028243	-0.82076	-0.00050993	-0.36617	-0.0002275	621.2846836043456	80.179	1.696	80.179	79.765	81.461	0					168	58	5	0	0	0	0.31274	3	19647	19595;19647;19704		16.566	5.7664	1	4028600			12378	2861	8201	8262	16779;16780;16781	16780					-0.05349596675023349
LYDSETKNANS	11	Unmodified	_LYDSETKNANS_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.28564453125	2	621.285857	1240.55716	0.35402	0.00021995	-0.87948	-0.00054641	-0.52546	-0.00032646	621.2847161440037	80.183	1.5423	80.207	79.909	81.451	0.023605					144	53	4	0	0	0	0.26897	2	19430	19430;19475		21.59	10.791	1	2744200			12379	2861	8201	8262	16782;16783	16782					-0.05349596675023349
LYDTIFQIF	9	Unmodified	_LYDTIFQIF_					0	0	0		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.305419921875	2	580.305332	1158.59611	0.36648	0.00021267	-0.064681	-3.7535E-05	0.3018	0.00017514	580.3053265917293	102.44	1.1389	102.44	102.22	103.35	0					197	78	5	0	0	0	0.0014903	8	26261	26249;26261;26305;26346;26383;26427;26436;26475		118.89	70.549	1	3063100			12380	5259	8202	8263	16784;16785;16786;16787;16788;16789;16790;16791	16785					0.02315780417256974
LYDTIFQIF	9	Unmodified	_LYDTIFQIF_					0	0	0		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3056030273438	2	580.305332	1158.59611	0.58595	0.00034003	-0.11916	-6.9148E-05	0.46679	0.00027088	580.3052462085946	102.46	0.95779	102.5	102.21	103.17	0.040916					196	74	4	0	0	0	0.0005281	9	26120	26062;26078;26120;26159;26196;26233;26236;26276;26287		131.27	82.922	1	2146400			12381	5259	8202	8263	16792;16793;16794;16795;16796;16797;16798;16799;16800	16794					0.02315780417256974
LYDVRTILL	9	Unmodified	_LYDVRTILL_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;chr20:45813290-45813437|509|10.48|0.62|4.07|+|ENST00000372568|UBE2C,UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3343505859375	2	553.334424	1104.6543	0.25009	0.00013839	0.22137	0.00012249	0.47146	0.00026088	553.3344405966984	73.744	0.34908	73.744	73.571	73.92	0					23	11	3	0	0	0	0.07372	1	17549	17549		38.176	12.776	1	156330			12382	165	8203	8264	16801	16801					0.10615462062582992
LYDVRTILL	9	Unmodified	_LYDVRTILL_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;chr20:45813290-45813437|509|10.48|0.62|4.07|+|ENST00000372568|UBE2C,UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3345947265625	2	553.334424	1104.6543	0.5331	0.00029498	-0.23218	-0.00012848	0.30092	0.00016651	553.3341481428455	73.678	0.48267	73.73	73.51	73.992	0.052567					32	17	3	0	0	0	0.032194	1	17382	17382		49.554	24.155	1	156300			12383	165	8203	8264	16802	16802					0.10615462062582992
LYEADFVLF	9	Unmodified	_LYEADFVLF_					0	0	0		ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7838745117188	2	558.784233	1115.55391	0.46614	0.00026047	-0.22825	-0.00012754	0.23789	0.00013293	558.7839927147196	94.612	0.81393	94.612	94.343	95.157	0					74	33	3	0	0	0	0.0087214	1	23876	23876		71.134	40.909	1	540030			12384	2777	8204	8265	16803	16803					0.0007580500889616815
LYEADFVLF	9	Unmodified	_LYEADFVLF_					0	0	0		ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7841796875	2	558.784233	1115.55391	0.46859	0.00026184	-0.28742	-0.0001606	0.18117	0.00010124	558.7839710078699	94.581	0.74367	94.619	94.37	95.114	0.038086					77	30	4	0	0	0	0.0053304	2	23754	23703;23754		81.613	45.569	1	688780			12385	2777	8204	8265	16804;16805	16805					0.0007580500889616815
LYEAIMRE	8	Unmodified	_LYEAIMRE_					0	0	0		ENSG00000157999|ENST00000409061|ANKRD61	ENSG00000157999|ENST00000409061|ANKRD61	ENSG00000157999|ENST00000409061|ANKRD61	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7606811523438	2	512.760235	1023.50592	0.55605	0.00028512	0.30748	0.00015766	0.86353	0.00044278	512.7603332822134	98.688	0.34912	98.688	98.512	98.861	0					33	19	2	0	0	0	0.25696	1	25128	25128		37.974	1.9298	1	133780			12386	3673	8205	8266	16806	16806					-0.004895921827824168
LYEAMAKAWE	10	Unmodified	_LYEAMAKAWE_					0	0	0		nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1;nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1	nc|ENSG00000166311|P17405-3|SMPD1	nc|ENSG00000166311|P17405-3|SMPD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2916870117188	2	606.291899	1210.56925	0.83511	0.00050632	0.96567	0.00058548	1.8008	0.0010918	606.2911692150491	98.68	1.1211	98.68	98.312	99.433	0					175	70	3	0	0	0	0.095946	1	25134	25134		45.7	1.8413	1	2395900			12387	4150	8206	8267	16807	16807					-0.02761651465561954
LYEASDHDY	9	Unmodified	_LYEASDHDY_					0	0	0			REV__ENSG00000142408|ENST00000270458|CACNG8	REV__ENSG00000142408|ENST00000270458|CACNG8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7311401367188	2	556.730186	1111.44582	0.34931	0.00019447	0.25423	0.00014154	0.60354	0.00033601	556.7305047794086	90.012	1.618	90.012	89.445	91.063	0					164	62	5	0	0	0	0.16036	1	22450	22450		23.148	1.4018	1	6485300	+		12388	9430	8207	8268	16808	16808					-0.1054461131232074
LYEASDHDY	9	Unmodified	_LYEASDHDY_					0	0	0			REV__ENSG00000142408|ENST00000270458|CACNG8	REV__ENSG00000142408|ENST00000270458|CACNG8	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	556.730186	1111.44582	0.33671	0.00018746	0.13563	7.5512E-05	0.47235	0.00026297	556.7304542005713	89.937	1.4454	89.972	89.462	90.907	0.034065	-0.020299	-6.7417E-05	NaN	23.148	144	58	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6643200	+		12389	9430	8207	8268							-0.1054461131232074
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.757568359375	2	611.757889	1221.50123	-0.0535	-3.2729E-05	0.18154	0.00011106	0.12804	7.8328E-05	611.7578638235005	59.077	1.0497	59.077	58.818	59.867	0					83	40	3	0	0	0	0.18939	4	13094	13043;13094;13146;13197		34.932	12.196	1	757110	+		12390	11135	8208	8269	16809;16810;16811;16812	16810					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.7579345703125	2	611.757889	1221.50123	0.26829	0.00016413	0.007625	4.6647E-06	0.27592	0.00016879	611.7576965750507	60.775	1.7056	60.775	59.81	61.516	0					141	62	4	0	0	0	0.07941	5	13609	13563;13609;13658;13700;13798		49.554	20.473	1	1066800	+		12391	11135	8208	8269	16813;16814;16815;16816;16817	16814					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.7579345703125	2	611.757889	1221.50123	0.3463	0.00021185	-0.18191	-0.00011129	0.16439	0.00010056	611.7577020945803	63.4	0.98124	63.4	63.073	64.054	0					67	35	3	0	0	0	0.27736	2	14356	14356;14409		24.991	2.2547	1	421090	+		12392	11135	8208	8269	16818;16819	16818					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.7579956054688	2	611.757889	1221.50123	0.26829	0.00016413	0.007625	4.6647E-06	0.27592	0.00016879	611.7576965750507	60.775	1.7056	60.775	59.81	61.516	0					141	62	4	0	0	0	0.31239	1	13745	13745		28.495	5.7582	1	1066800	+		12393	11135	8208	8269	16820	16820					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7582397460938	2	611.757889	1221.50123	0.13752	8.4129E-05	-0.12538	-7.6704E-05	0.012136	7.4245E-06	611.7578278071834	58.975	1.4034	59.045	58.804	60.208	0.070477					93	54	3	0	0	0	0.07941	3	12902	12902;12950;13028		49.554	19.219	1	590860	+		12394	11135	8208	8269	16821;16822;16823	16821					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7579956054688	2	611.757889	1221.50123	0.18914	0.00011571	0.14396	8.8071E-05	0.3331	0.00020378	611.7578623646494	60.826	1.3047	60.9	60.211	61.515	0.073421					108	48	3	0	0	0	0.049706	6	13432	13377;13432;13481;13525;13571;13617		57.722	28.64	1	581240	+		12395	11135	8208	8269	16824;16825;16826;16827;16828;16829	16825					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7575073242188	2	611.757889	1221.50123	0.37389	0.00022873	-0.51003	-0.00031201	-0.13614	-8.3285E-05	611.7574851017623	63.284	0.63096	63.357	63.076	63.707	0.072701					47	25	2	0	0	0	0.27736	3	14193	14193;14244;14294		24.991	2.2547	1	428670	+		12396	11135	8208	8269	16830;16831;16832	16830					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7568359375	2	611.757889	1221.50123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.732	1	63.803	63.303	64.303	0.071018								0	0	0	0.33202	1	14354	14354		9.544	1.3884	1		+		12397	11135	8208	8269	16833	16833					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7579956054688	2	611.757889	1221.50123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.023	1	64.094	63.594	64.594	0.071014								0	0	0	0.33202	1	14443	14443		9.544	1.3884	1		+		12398	11135	8208	8269	16834	16834					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	611.757889	1221.50123	0.3463	0.00021185	-0.18191	-0.00011129	0.16439	0.00010056	611.7577020945803	63.4	0.98124	63.4	63.073	64.054	0	0.021538	0.0001961	NaN	24.991	67	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421090	+		12399	11135	8208	8269							-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	611.757889	1221.50123	-0.0535	-3.2729E-05	0.18154	0.00011106	0.12804	7.8328E-05	611.7578638235005	59.077	1.0497	59.077	58.818	59.867	0	0.016014	0.0001698	NaN	49.554	83	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757110	+		12400	11135	8208	8269							-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	611.757889	1221.50123	0.37389	0.00022873	-0.51003	-0.00031201	-0.13614	-8.3285E-05	611.7574851017623	63.284	0.63096	63.357	63.076	63.707	0.072701	-0.021538	-0.00020535	NaN	24.991	47	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428670	+		12401	11135	8208	8269							-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	611.757889	1221.50123	0.13752	8.4129E-05	-0.12538	-7.6704E-05	0.012136	7.4245E-06	611.7578278071834	58.975	1.4034	59.045	58.804	60.208	0.070477	-0.016014	-0.00020572	NaN	49.554	93	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	590860	+		12402	11135	8208	8269							-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	611.757889	1221.50123	0.18914	0.00011571	0.14396	8.8071E-05	0.3331	0.00020378	611.7578623646494	60.826	1.3047	60.9	60.211	61.515	0.073421	0.062222	9.6689E-05	NaN	57.722	108	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581240	+		12403	11135	8208	8269							-0.10066521116232252
LYEDIGKGAF	10	Unmodified	_LYEDIGKGAF_					0	0	0		ENSG00000058404|ENST00000395749|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B	ENSG00000058404|ENST00000395749|CAMK2B	ENSG00000058404|ENST00000395749|CAMK2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7900390625	2	556.784764	1111.55498	0.42943	0.0002391	3.4763	0.0019355	3.9057	0.0021746	556.786583794015	56.232	0.50453	56.232	56.035	56.539	0					34	18	2	0	0	0	0.24016	1	12273	12273		29.082	3.6823	1	399460			12404	628	8209	8270	16835	16835					0.0036601937779323634
LYEEAFTVF	9	Unmodified	_LYEEAFTVF_					0	0	0		CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7748413085938	2	559.773865	1117.53318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.312	1	84.312	83.812	84.812	0								0	0	0	0.15116	1	20775	20775		25.399	9.5521	1				12405	201	8210	8271	16836	16836					-0.02088785370756341
LYEEAFTVF	9	Unmodified	_LYEEAFTVF_					0	0	0		CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7740478515625	2	559.773865	1117.53318	0.77709	0.00043499	0.54372	0.00030436	1.3208	0.00073936	560.2756486163988	84.217	0.39954	84.217	83.9	84.299	0					39	16	4	0	0	0	0.081719	1	20718	20718		49.933	23.049	1	885570			12406	201	8210	8271	16837	16837					-0.02088785370756341
LYEEAFTVF	9	Unmodified	_LYEEAFTVF_					0	0	0		CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.774169921875	2	559.773865	1117.53318	0.53608	0.00030009	0.69305	0.00038795	1.2291	0.00068804	559.7740081269836	84.206	0.84316	84.228	83.499	84.342	0.021751					36	15	3	0	0	0	0.10264	1	20557	20557		43.858	20.71	1	493960			12407	201	8210	8271	16838	16838					-0.02088785370756341
LYEEDKAGHW	10	Unmodified	_LYEEDKAGHW_					0	0	0			REV__ZNF749|p.V58Yfs*9|1|0.23|ENSG00000186230|chr19:57443319-57443319|G/-|frameshift_variant	REV__ZNF749|p.V58Yfs*9|1|0.23|ENSG00000186230|chr19:57443319-57443319|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.2880859375	2	624.288202	1246.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.223	1	30.299	29.799	30.799	0.075403								0	0	0	0.33892	1	4241	4241		1.4819	0	1		+		12408	13345	8211	8272	16839	16839					-0.051566677416076345
LYEEDQFAY	9	Unmodified	_LYEEDQFAY_					0	0	0			REV__ENSG00000171219|ENST00000342711|CDC42BPG	REV__ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3282470703125	2	589.256037	1176.49752	0.52492	0.00030931	0.49767	0.00029326	1.0226	0.00060256	589.2556860613579	52.613	0.090378	52.68	52.604	52.695	0.067173					4	2	2	0	0	0	0.25809	1	10949	10949		2.3027	0	1	29548	+		12409	10246	8212	8273	16840	16840					-0.08366867618406104
LYEFIFARC	9	Unmodified	_LYEFIFARC_					0	0	0		ENST00000377966.3_1_9:36060123-36063798:+|nuORF	ENST00000377966.3_1_9:36060123-36063798:+|nuORF	ENST00000377966.3_1_9:36060123-36063798:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2911987304688	2	581.291702	1160.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.417	1	68.417	67.917	68.917	0								0	0	0	0.22204	1	15925	15925		14.838	0	1				12410	6258	8213	8274	16841	16841					-0.005010263947497151
LYEGLWPELF	10	Unmodified	_LYEGLWPELF_					0	0	0			REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8208618164062	2	633.823889	1265.63323	0.4135	0.00026209	-4.1042	-0.0026013	-3.6907	-0.0023392	633.8212912824687	64.048	0.34377	64.119	63.945	64.289	0.071022					19	11	3	0	0	0	0.33099	1	14470	14470		19.257	2.1441	1	155030	+		12411	12644	8214	8275	16842	16842					0.011034519630356954
LYEGLWPELF	10	Unmodified	_LYEGLWPELF_					0	0	0			REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	633.823889	1265.63323	0.39744	0.00025191	-3.8062	-0.0024124	-3.4087	-0.0021605	633.8213226398593	64.109	0.38423	64.109	63.998	64.382	0	-0.0051256	0.00018315	NaN	19.257	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98130	+		12412	12644	8214	8275							0.011034519630356954
LYEGLWPELF	10	Unmodified	_LYEGLWPELF_					0	0	0			REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	633.823889	1265.63323	0.4135	0.00026209	-4.1042	-0.0026013	-3.6907	-0.0023392	633.8212912824687	64.048	0.34377	64.119	63.945	64.289	0.071022	0.0051256	-0.00019459	NaN	19.257	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155030	+		12413	12644	8214	8275							0.011034519630356954
LYEGVPLPFY	10	Unmodified	_LYEGVPLPFY_					0	0	0		nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3011474609375	2	599.313158	1196.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.228	1	95.267	94.767	95.767	0.038872								0	0	0	0.33395	1	23936	23936		7.2892	0	1				12414	452	8215	8276	16843	16843					0.021320669343367626
LYEHNFAFF	9	Unmodified	_LYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.2799682617188	2	594.279649	1186.54475	0.48881	0.00029049	2.0514	0.0012191	2.5403	0.0015096	594.2799726316609	70.203	0.56966	70.203	69.961	70.531	0					60	21	4	0	0	0	0.091044	3	16464	16447;16464;16497		34.402	9.0024	1	592540			12415	644	8216	8277	16844;16845;16846	16845					-0.041065435567816166
LYEHNFAFF	9	Unmodified	_LYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.267822265625	2	594.279649	1186.54475	0.36841	0.00021894	1.6693	0.00099203	2.0377	0.001211	594.2804366550262	70.13	0.53721	70.19	69.915	70.453	0.060562					45	22	3	0	0	0	0.083124	2	16311	16263;16311		36.127	10.728	1	434250			12416	644	8216	8277	16847;16848	16848					-0.041065435567816166
LYELHVFTF	9	Unmodified	_LYELHVFTF_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3136596679688	2	584.8055	1167.59645	0.48655	0.00028453	-0.56897	-0.00033274	-0.082428	-4.8205E-05	584.8049710086353	77.86	1.0447	77.86	77.606	78.651	0					63	35	2	0	0	0	0.19376	1	18938	18938		25.399	7.253	1	1557800			12417	639	8217	8278	16849	16849					0.0193520013710895
LYELHVFTF	9	Unmodified	_LYELHVFTF_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.754638671875	2	584.8055	1167.59645	0.78385	0.0004584	-0.78336	-0.00045811	0.00048504	2.8366E-07	584.8049058893007	77.819	1.032	77.853	77.587	78.619	0.034485					66	35	2	0	0	0	0.24791	1	18773	18773		10.074	3.3508	1	1626300			12418	639	8217	8278	16850	16850					0.0193520013710895
LYELIITRYS	10	Unmodified	_LYELIITRYS_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF;ENST00000530567.1_1_11:64977449-64978754:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.24945068359375	3	424.239573	1269.69689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.12	1	100.12	99.616	100.62	0								0	0	0	0.33869	1	25581	25581		1.7423	0.14999	1				12419	454	8218	8279	16851	16851					0.07282812400126204
LYELYFVF	8	Unmodified	_LYELYFVF_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.760009765625	2	547.283869	1092.55318	0.56948	0.00031167	3.7971	0.0020781	4.3666	0.0023898	547.2862555516771	64.451	1.034	64.451	63.762	64.796	0					68	36	2	0	0	0	0.33972	1	14744	14744		19.439	3.2899	1	304900			12420	5131	8219	8280	16852	16852					0.010610103598537535
LYEMDRKLM	9	Unmodified	_LYEMDRKLM_					0	0	0			REV__ENST00000449218.5_1_2:136740987-136741020:-|nuORF	REV__ENST00000449218.5_1_2:136740987-136741020:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.802734375	2	599.801577	1197.5886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.751	1	96.751	96.251	97.251	0								0	0	0	0.25692	1	24560	24560		7.9102	1.187	1		+		12421	11916	8220	8281	16853	16853					-0.0022901844629359402
LYENCFHIL	9	Unmodified	_LYENCFHIL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.28173828125	2	576.281334	1150.54812	0.52779	0.00030415	0.040031	2.3069E-05	0.56782	0.00032722	576.2815930919712	70.07	0.90866	70.07	69.878	70.786	0					55	33	2	0	0	0	0.0044564	1	16442	16442		92.653	54.478	1	232760			12422	2261	8221	8282	16854	16854					-0.021136167744089107
LYEQAFQLL	9	Unmodified	_LYEQAFQLL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8035888671875	2	562.802957	1123.59136	0.77615	0.00043682	0.84788	0.00047719	1.624	0.00091401	562.803246984172	84.415	0.75908	84.415	84.283	85.042	0					102	46	3	0	0	0	0.0028323	2	20797	20797;20843		110.67	45.44	1	2195900			12423	1333	8222	8283	16855;16856	16855					0.03450896274512161
LYEQAFQLL	9	Unmodified	_LYEQAFQLL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.8034057617188	2	562.802957	1123.59136	0.51949	0.00029237	0.6389	0.00035957	1.1584	0.00065195	562.8031765000497	84.388	0.57134	84.411	84.218	84.79	0.023125					81	42	2	0	0	0	0.0042703	2	20632	20632;20670		99.755	43.578	1	2201500			12424	1333	8222	8283	16857;16858	16857					0.03450896274512161
LYESPTEL	8	Unmodified	_LYESPTEL_					0	0	0			REV__nc|ENSG00000166448|Q8N3G9|TMEM130	REV__nc|ENSG00000166448|Q8N3G9|TMEM130	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.23773193359375	2	476.237116	950.459678	-0.011807	-5.6231E-06	1.51	0.0007191	1.4982	0.00071348	476.2376523269852	51.614	0.41153	51.684	51.503	51.915	0.069874					23	14	2	0	0	0	0.46036	1	10677	10677		18.135	4.2289	1	96878	+		12425	10078	8223	8284	16859	16859					-0.017533338132352583
LYETCPLKMN	10	Unmodified	_LYETCPLKMN_					0	0	0			REV__nc|ENSG00000180113|O60522-2|TDRD6	REV__nc|ENSG00000180113|O60522-2|TDRD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2901611328125	2	606.293585	1210.57262	0.8351	0.00050632	-1.8142	-0.0010999	-0.97908	-0.00059361	606.2911692150491	98.68	1.1211	98.68	98.312	99.433	0					175	70	3	0	0	0	0.32016	2	25253	25253;25258		20.415	1.1575	1	2395900	+		12426	10499	8224	8285	16860;16861	16860					-0.024247246831919256
LYETLVKKD	9	Unmodified	_LYETLVKKD_					0	0	0			REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF	REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8150024414062	2	554.816064	1107.61758	0.057258	3.1768E-05	0.087476	4.8533E-05	0.14473	8.0301E-05	554.8160560323649	40.612	0.59045	40.702	40.477	41.067	0.089645					53	22	3	0	0	0	0.33704	1	7427	7427		1.8442	0	1	326020	+		12427	12414	8225	8286	16862	16862					0.06807165446025465
LYETPAPACI	10	Unmodified	_LYETPAPACI_					0	0	0			REV__ENST00000497036.5_1_22:50688078-50688743:-|nuORF	REV__ENST00000497036.5_1_22:50688078-50688743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2686157226562	2	539.267893	1076.52123	0.41081	0.00022154	0.10939	5.8993E-05	0.52021	0.00028053	539.267932016145	76.107	6.1144	76.107	75.058	81.173	0					570	244	5	0	0	0	0.40987	1	19376	19376		10.824	2.0785	1	31144000	+		12428	12189	8226	8287	16863	16863					-0.013967253856208117
LYETPAPACI	10	Unmodified	_LYETPAPACI_					0	0	0			REV__ENST00000497036.5_1_22:50688078-50688743:-|nuORF	REV__ENST00000497036.5_1_22:50688078-50688743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2684936523438	2	539.267893	1076.52123	0.5274	0.00028441	-0.014111	-7.6096E-06	0.51328	0.0002768	539.2678840240484	75.998	6.6708	76.038	75.11	81.781	0.03923					554	264	5	0	0	0	0.40987	1	19224	19224		10.824	2.0785	1	30683000	+		12429	12189	8226	8287	16864	16864					-0.013967253856208117
LYEVIQSTL	9	Unmodified	_LYEVIQSTL_					0	0	0		nc|ENSG00000159131|P22102-2|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENSG00000159131|ENST00000381815|GART	nc|ENSG00000159131|P22102-2|GART	nc|ENSG00000159131|P22102-2|GART	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2955322265625	2	533.294965	1064.57538	0.55062	0.00029364	0.20294	0.00010823	0.75356	0.00040187	533.2949953359108	68.465	0.71094	68.529	68.192	68.903	0.063507					36	26	2	0	0	0	0.29576	1	15839	15839		7.2892	0.56607	1	115640			12430	3714	8227	8288	16865	16865					0.04567190037619184
LYEVLFIFI	9	Unmodified	_LYEVLFIFI_					0	0	0			REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF	REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8339233398438	2	578.836268	1155.65798	0.096426	5.5815E-05	-3.4935	-0.0020222	-3.3971	-0.0019663	578.8340879625891	43.592	0.3689	43.681	43.581	43.95	0.088924					21	13	2	0	0	0	0.20367	1	8259	8259		18.135	1.0221	1	75320	+		12431	11204	8228	8289	16866	16866					0.08638131836414686
LYEVLFIFI	9	Unmodified	_LYEVLFIFI_					0	0	0			REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF	REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	578.836268	1155.65798	0.096426	5.5815E-05	-3.4935	-0.0020222	-3.3971	-0.0019663	578.8340879625891	43.592	0.3689	43.681	43.581	43.95	0.088924	-0.025456	-3.7896E-05	NaN	18.135	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75320	+		12432	11204	8228	8289							0.08638131836414686
LYEYNYLF	8	Unmodified	_LYEYNYLF_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7672119140625	2	562.768583	1123.52261	0.071998	4.0518E-05	-1.9729	-0.0011103	-1.9009	-0.0010698	562.7675191272258	90.645	0.40609	90.68	90.477	90.883	0.034622					24	16	2	0	0	0	0.39599	1	22552	22552		26.884	3.7352	1	90239	+		12433	7892	8229	8290	16867	16867					-0.034207680251938655
LYEYNYLF	8	Unmodified	_LYEYNYLF_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.768583	1123.52261	0.31535	0.00017747	-2.7644	-0.0015557	-2.449	-0.0013782	563.2682963120925	90.613	0.45026	90.613	90.523	90.973	0	-0.033274	-0.00041644	NaN	26.884	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93514	+		12434	7892	8229	8290							-0.034207680251938655
LYEYNYLF	8	Unmodified	_LYEYNYLF_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	562.768583	1123.52261	0.071998	4.0518E-05	-1.9729	-0.0011103	-1.9009	-0.0010698	562.7675191272258	90.645	0.40609	90.68	90.477	90.883	0.034622	0.033274	0.00047438	NaN	26.884	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90239	+		12435	7892	8229	8290							-0.034207680251938655
LYEYSYLF	8	Unmodified	_LYEYSYLF_					0	0	0			REV__DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	REV__DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.795166015625	2	549.263133	1096.51171	0.35087	0.00019272	1.8527	0.0010176	2.2036	0.0012103	549.2634350553969	78.989	0.2247	78.989	78.875	79.1	0					11	7	3	0	0	0	0.35499	1	19187	19187		15.768	0	1	34649	+		12436	7889	8230	8291	16868	16868					-0.03268170399496739
LYFAHVGF	8	Unmodified	_LYFAHVGF_					0	0	0			REV__ACTRT2|p.P134H|1|0.08|ENSG00000169717|chr1:3022087-3022087|C/A|missense_variant	REV__ACTRT2|p.P134H|1|0.08|ENSG00000169717|chr1:3022087-3022087|C/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7292175292969	2	477.247621	952.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.572	1	93.609	93.109	94.109	0.037369								0	0	0	0.38822	1	23431	23431		0.79363	0	1		+		12437	7693	8231	8292	16869	16869					0.0025472107695350132
LYFARDDW	8	Unmodified	_LYFARDDW_					0	0	0			REV__ENSG00000130193|ENST00000336138|THEM6	REV__ENSG00000130193|ENST00000336138|THEM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2553100585938	2	543.256174	1084.49779	0.21992	0.00011947	-1.001	-0.00054383	-0.78113	-0.00042436	543.2555724614066	18.561	0.41795	18.651	18.545	18.963	0.089705					64	49	2	0	0	0	0.54081	2	1066	1066;1090		0.79363	0.10326	1	20748	+		12438	9048	8232	8293	16870;16871	16870					-0.04107403107900609
LYFARRECS	9	Unmodified	_LYFARRECS_					0	0	0		ENSG00000185105|ENST00000409745|MYADML2	ENSG00000185105|ENST00000409745|MYADML2	ENSG00000185105|ENST00000409745|MYADML2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7825317382812	2	572.782033	1143.54951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.629	1	99.629	99.129	100.13	0								0	0	0	0.2699	1	25432	25432		5.2307	0	1				12439	5009	8233	8294	16872	16872					-0.016519826856438158
LYFAYERFHM	10	Unmodified	_LYFAYERFHM_					0	0	0			REV__ENST00000258963.7_1_17:56051264-56051366:-|nuORF	REV__ENST00000258963.7_1_17:56051264-56051366:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2798767089844	3	459.553386	1375.63833	0.34293	0.00015759	-3.8311	-0.0017606	-3.4882	-0.001603	459.5516207985507	65.37	0.1568	65.439	65.367	65.524	0.068916					8	5	2	0	0	0	0.31794	1	14841	14841		4.1895	0	1	38883	+		12440	11226	8234	8295	16873	16873					-0.034465674460079754
LYFCLHFVM	9	Unmodified	_LYFCLHFVM_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|326|3|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|335|3|anti-sense;chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|20;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|53;chr2:113477199-113482177|353|19.55|0.21|6.52|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|45;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|75;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|74	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7855834960938	2	586.785198	1171.55584	0.80973	0.00047514	0.23938	0.00014047	1.0491	0.0006156	586.7852138184886	96.751	0.93045	96.79	96.541	97.471	0.039772					142	44	6	0	0	0	0.23437	1	24363	24363		14.582	14.582	1	3514300			12441	138	8235	8296	16874	16874					-0.023071807784845078
LYFCLHFVM	9	Unmodified	_LYFCLHFVM_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|326|3|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|335|3|anti-sense;chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|20;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|53;chr2:113477199-113482177|353|19.55|0.21|6.52|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|45;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|75;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|74	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	586.785198	1171.55584	0.6528	0.00038305	0.58013	0.00034041	1.2329	0.00072346	586.7854300424323	96.812	0.88638	96.812	96.552	97.438	0	0.010807	0.00016058	NaN	14.582	131	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2573500			12442	138	8235	8296							-0.023071807784845078
LYFCLHFVM	9	Unmodified	_LYFCLHFVM_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|326|3|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|335|3|anti-sense;chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|20;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|53;chr2:113477199-113482177|353|19.55|0.21|6.52|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|45;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|75;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|74	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	586.785198	1171.55584	0.80973	0.00047514	0.23938	0.00014047	1.0491	0.0006156	586.7852138184886	96.751	0.93045	96.79	96.541	97.471	0.039772	-0.010807	-0.00023931	NaN	14.582	142	44	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3514300			12443	138	8235	8296							-0.023071807784845078
LYFDRKYLF	9	Unmodified	_LYFDRKYLF_					0	0	0		nc|ENSG00000186417|Q6ZMI3-2|GLDN;ENSG00000186417|ENST00000335449|GLDN	nc|ENSG00000186417|Q6ZMI3-2|GLDN	nc|ENSG00000186417|Q6ZMI3-2|GLDN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.5635070800781	3	422.229008	1263.66519	0.53666	0.00022659	-0.091792	-3.8757E-05	0.44487	0.00018784	422.2288532335511	62.265	0.81567	62.265	62.067	62.883	0					46	29	3	0	0	0	0.23216	1	14033	14033		14.405	4.8614	1	197670			12444	5075	8236	8297	16875	16875					0.04390864436845732
LYFDRKYLF	9	Unmodified	_LYFDRKYLF_					0	0	0		nc|ENSG00000186417|Q6ZMI3-2|GLDN;ENSG00000186417|ENST00000335449|GLDN	nc|ENSG00000186417|Q6ZMI3-2|GLDN	nc|ENSG00000186417|Q6ZMI3-2|GLDN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.2292175292969	3	422.229008	1263.66519	0.16845	7.1125E-05	0.16554	6.9894E-05	0.33399	0.00014102	422.2289666169355	62.136	0.60344	62.21	62.029	62.632	0.073421					39	20	3	0	0	0	0.2125	2	13849	13849;13898		16.566	7.5896	1	313160			12445	5075	8236	8297	16876;16877	16876					0.04390864436845732
LYFDVEPFVF	10	Unmodified	_LYFDVEPFVF_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.318603515625	2	638.31844	1274.62233	-0.063677	-4.0646E-05	0.22198	0.00014169	0.1583	0.00010105	638.3183937222219	105.88	0.30247	105.88	105.78	106.08	0					42	28	2	0	0	0	0.45627	2	27258	27258;27298		3.5965	0.8613	1	81641			12446	1377	8237	8298	16878;16879	16878					-0.003999504112471186
LYFDVEPFVF	10	Unmodified	_LYFDVEPFVF_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.319091796875	2	638.31844	1274.62233	0.25407	0.00016217	0.14262	9.104E-05	0.39669	0.00025321	638.820214943036	105.84	0.28667	105.87	105.71	106	0.029739					43	29	2	0	0	0	0.45627	1	27069	27069		3.5965	0.31518	1	143160			12447	1377	8237	8298	16880	16880					-0.003999504112471186
LYFESVRTF	9	Unmodified	_LYFESVRTF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3019409179688	2	581.300581	1160.58661	0.57983	0.00033706	0.4153	0.00024141	0.99513	0.00057847	581.3006429768242	62.773	0.29841	62.845	62.717	63.015	0.072697					16	10	2	0	0	0	0.095436	1	14083	14083		33.445	14.188	1	135720			12448	3602	8238	8299	16881	16881					0.012740121317619924
LYFESVRTF	9	Unmodified	_LYFESVRTF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	581.300581	1160.58661	0.5523	0.00032105	0.17712	0.00010296	0.72942	0.00042401	581.3005103749266	62.857	0.30601	62.857	62.693	62.999	0	0.0056743	-0.00020872	NaN	33.445	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156230			12449	3602	8238	8299							0.012740121317619924
LYFFLFVLF	9	Unmodified	_LYFFLFVLF_					0	0	0		ENST00000290075.10_1_8:23423911-23424199:+|nuORF	ENST00000290075.10_1_8:23423911-23424199:+|nuORF	ENST00000290075.10_1_8:23423911-23424199:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5643310546875	3	403.563328	1207.66815	0.95303	0.00038461	1.4692	0.0005929	2.4222	0.00097751	403.56400919772364	66.147	0.67091	66.147	65.936	66.607	0					48	24	3	0	0	0	0.2796	1	15305	15305		5.7319	5.7319	1	145160			12450	5943	8239	8300	16882	16882					0.07262739561656417
LYFHINQTL	9	Unmodified	_LYFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2684326171875	2	574.808574	1147.60259	0.44917	0.00025819	-0.71726	-0.00041229	-0.2681	-0.0001541	574.8080903765925	63.074	0.75684	63.074	62.861	63.618	0					50	28	2	0	0	0	0.072867	1	14281	14281		45.7	16.618	1	572230			12451	2620	8240	8301	16883	16883					0.03469718368660324
LYFHINQTL	9	Unmodified	_LYFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2694091796875	2	574.808574	1147.60259	0.39078	0.00022462	-0.68942	-0.00039628	-0.29864	-0.00017166	574.8082460423282	62.962	0.62085	63.034	62.857	63.478	0.072701					56	26	3	0	0	0	0.16944	1	14148	14148		30.637	16.73	1	462020			12452	2620	8240	8301	16884	16884					0.03469718368660324
LYFIGMAIE	9	Unmodified	_LYFIGMAIE_					0	0	0		ENSG00000121318|ENST00000240619|TAS2R10	ENSG00000121318|ENST00000240619|TAS2R10	ENSG00000121318|ENST00000240619|TAS2R10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7556762695312	2	528.775354	1055.53615	0.5625	0.00029744	-1.8088	-0.00095645	-1.2463	-0.00065901	528.774388075714	93.181	0.49757	93.181	93.101	93.599	0					24	19	2	0	0	0	0.17491	1	23487	23487		28.487	1.6032	1	84335			12453	2151	8241	8302	16885	16885					0.01060766482373765
LYFKWIFS	8	Unmodified	_LYFKWIFS_					0	0	0		ENST00000395699.3_1_7:44922485-44922656:-|nuORF	ENST00000395699.3_1_7:44922485-44922656:-|nuORF	ENST00000395699.3_1_7:44922485-44922656:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2799682617188	2	552.299853	1102.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56	1	56.066	55.566	56.566	0.066452								0	0	0	0.38796	1	12004	12004		14.582	1.0738	1				12454	6335	8242	8303	16886	16886					0.03796422833647739
LYFLFAPTL	9	Unmodified	_LYFLFAPTL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.8076171875	2	542.807511	1083.60047	0.31201	0.00016936	-0.044321	-2.4058E-05	0.26769	0.00014531	542.8074766369028	102.21	0.71198	102.21	101.98	102.69	0					128	47	4	0	0	0	0.030375	5	26229	26186;26229;26265;26307;26360		50.855	30.501	1	666430			12455	619	8243	8304	16887;16888;16889;16890;16891	16888					0.06201289630848805
LYFLFAPTL	9	Unmodified	_LYFLFAPTL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.8076782226562	2	542.807511	1083.60047	0.49581	0.00026913	-0.27243	-0.00014788	0.22339	0.00012126	542.8073490940766	102.15	0.66917	102.19	101.98	102.65	0.042656					118	49	3	0	0	0	0.083504	4	26059	26016;26059;26096;26136		36.044	20.842	1	510880			12456	619	8243	8304	16892;16893;16894;16895	16893					0.06201289630848805
LYFLHFII	8	Unmodified	_LYFLHFII_					0	0	0		chr12:69359236-69362788|165|13.48|0.22|5.96|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|7	chr12:69359236-69362788|165|13.48|0.22|5.96|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|7	chr12:69359236-69362788|165|13.48|0.22|5.96|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.32080078125	2	533.310221	1064.60589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.96	1	106.98	106.48	107.48	0.025711								0	0	0	0.38822	1	27394	27394		6.3541	0	1				12457	150	8244	8305	16896	16896					0.07617013213325663
LYFLLGLLN	9	Unmodified	_LYFLLGLLN_					0	0	0			REV__nc|ENSG00000124564|O00476|SLC17A3	REV__nc|ENSG00000124564|O00476|SLC17A3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3209838867188	2	533.320786	1064.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.42	1	107.42	106.92	107.92	0								0	0	0	0.25361	1	27724	27724		8.5933	0	1		+		12458	8958	8245	8306	16897	16897					0.09728978522184661
LYFLTVEI	8	Unmodified	_LYFLTVEI_					0	0	0		tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.28204345703125	2	499.283869	996.553185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.321	1	73.321	72.821	73.821	0								0	0	0	0.38652	1	17419	17419		16.942	1.0951	1				12459	13506	8246	8307	16898	16898					0.054770103598457354
LYFNRFFE	8	Unmodified	_LYFNRFFE_					0	0	0			REV__ENST00000528236.5_1_11:45947679-45949381:+|nuORF	REV__ENST00000528236.5_1_11:45947679-45949381:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3005981445312	2	568.282192	1134.54983	0.082306	4.6773E-05	-0.17449	-9.9158E-05	-0.092181	-5.2385E-05	568.2807246349181	73.774	0.16701	73.774	73.69	73.857	0					7	5	2	0	0	0	0.35759	1	17534	17534		10.183	0.83596	1	23213	+		12460	10051	8247	8308	16899	16899					-0.012062396941473708
LYFNVEVE	8	Unmodified	_LYFNVEVE_					0	0	0			REV__tr|U7T3B4|U7T3B4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00190PE=4SV=1	REV__tr|U7T3B4|U7T3B4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00190PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.19580078125	2	506.752933	1011.49131	0.53338	0.00027029	1.7185	0.00087088	2.2519	0.0011412	506.75336641156304	54.24	0.46394	54.24	54.016	54.48	0					37	17	3	0	0	0	0.35759	1	11635	11635		10.183	0.83596	1	121280	+		12461	13276	8248	8309	16900	16900					-0.01397341059282553
LYFPETSH	8	Unmodified	_LYFPETSH_					0	0	0		ENST00000264992.7_1_3:130745437-130745518:-|nuORF	ENST00000264992.7_1_3:130745437-130745518:-|nuORF	ENST00000264992.7_1_3:130745437-130745518:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2380676269531	2	497.23745	992.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.002	1	70.002	69.502	70.502	0								0	0	0	0.38822	1	16406	16406		2.5775	0	1				12462	5892	8249	8310	16901	16901					-0.03618494373529302
LYFQVRGHF	9	Unmodified	_LYFQVRGHF_					0	0	0		chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|85	chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|85	chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|85	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2721557617188	2	583.808908	1165.60326	0.73186	0.00042727	-1.2972	-0.00075733	-0.56536	-0.00033006	583.8080420449014	64.555	1.0213	64.555	64.264	65.286	0					76	36	3	0	0	0	0.2446	1	14877	14877		11.64	1.5664	1	348580			12463	172	8250	8311	16902	16902					0.02708557808364276
LYFQVRGHF	9	Unmodified	_LYFQVRGHF_					0	0	0		chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|85	chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|85	chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|85	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	583.808908	1165.60326	0.74294	0.00043373	-1.5884	-0.00092733	-0.84547	-0.00049359	583.8080723918526	64.403	0.96153	64.472	64.172	65.134	0.068916	-0.041734	-0.00020185	NaN	16.942	70	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409980			12464	172	8250	8311							0.02708557808364276
LYFRKNQID	9	Unmodified	_LYFRKNQID_					0	0	0			REV__ENSG00000146676|ENST00000395699|PURB	REV__ENSG00000146676|ENST00000395699|PURB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7952880859375	2	598.824755	1195.63496	0.59644	0.00035716	3.4681	0.0020768	4.0645	0.0024339	598.8271664262732	85.261	0.44524	85.261	85.014	85.459	0					36	15	4	0	0	0	0.13166	1	21049	21049		37.974	9.4872	1	286030	+		12465	9547	8251	8312	16903	16903					0.044965057716581214
LYFSVKTNI	9	Unmodified	_LYFSVKTNI_					0	0	0		ENSG00000203747|ENST00000443193|FCGR3A;ENSG00000162747|ENST00000650385|FCGR3B	ENSG00000203747|ENST00000443193|FCGR3A	ENSG00000203747|ENST00000443193|FCGR3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2853393554688	2	542.8055	1083.59645	0.18313	9.9402E-05	-0.34625	-0.00018794	-0.16312	-8.8543E-05	542.8053889758008	59.363	0.46153	59.363	59.194	59.656	0					31	17	3	0	0	0	0.19558	1	13166	13166		26.268	5.8536	1	141870			12466	5442	8252	8313	16904	16904					0.05799200137153093
LYFYANGL	8	Unmodified	_LYFYANGL_					0	0	0			REV__nc|ENSG00000160360|Q86YR5|GPSM1	REV__nc|ENSG00000160360|Q86YR5|GPSM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7428283691406	2	480.744911	959.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.19	1	43.19	42.69	43.69	0								0	0	0	0.38822	1	8256	8256		5.7604	0	1		+		12467	9850	8253	8314	16905	16905					-0.00609002505530043
LYFYYESRA	9	Unmodified	_LYFYYESRA_					0	0	0		TRPC5|p.T544S|1|0.59|ENSG00000072315|chrX:111847184-111847184|T/A|missense_variant	TRPC5|p.T544S|1|0.59|ENSG00000072315|chrX:111847184-111847184|T/A|missense_variant	TRPC5|p.T544S|1|0.59|ENSG00000072315|chrX:111847184-111847184|T/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.775390625	2	606.290214	1210.56587	1.128	0.00068387	-3.8752	-0.0023495	-2.7472	-0.0016656	606.2875985264928	80.568	0.33263	80.568	80.341	80.674	0					17	11	2	0	0	0	0.18364	1	19648	19648		20.454	6.9457	1	106530			12468	13752	8254	8315	16906	16906					-0.03098578247909245
LYGDKWNSFT	10	Unmodified	_LYGDKWNSFT_					0	0	0		ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772|FPGT;nc|ENSG00000254685|O14772-2|FPGT;ENST00000533006.1_1_1:74663962-74715145:+|nuORF;nc|ENSG00000254685|O14772-3|FPGT;nc|ENSG00000116783|Q59H18-3|TNNI3K;nc|ENSG00000116783|Q59H18-4|TNNI3K;nc|ENSG00000116783|Q59H18-1|TNNI3K	ENSG00000254685|ENST00000370898|FPGT	ENSG00000254685|ENST00000370898|FPGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.7944946289062	2	615.793121	1229.57169	-0.12336	-7.5963E-05	0.33367	0.00020547	0.21032	0.00012951	615.7934411667304	50.712	0.27966	50.786	50.607	50.886	0.07312					11	9	2	0	0	0	0.46899	1	10411	10411		1.1933	0	1	52972			12469	5694	8255	8316	16907	16907					-0.03391479736251313
LYGEFADPF	9	Unmodified	_LYGEFADPF_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3023681640625	2	529.745108	1057.47566	0.54711	0.00028983	2.8436	0.0015064	3.3907	0.0017962	530.2476237190649	85.436	0.14847	85.436	85.311	85.459	0					8	5	2	0	0	0	0.25051	1	21081	21081		7.9102	0.62092	1	44005			12470	1808	8256	8317	16908	16908					-0.05077627576338273
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2894287109375	2	572.289682	1142.56481	0.49293	0.0002821	0.0028899	1.6538E-06	0.49582	0.00028375	572.2898637343219	70.494	2.383	70.494	69.818	72.202	0					246	85	6	0	0	0	0.026569	1	16719	16719		53.576	4.0213	1	15315000	+		12471	12106	8257	8318	16909	16909					-0.0007679261682369543
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.28955078125	2	572.289682	1142.56481	0.51444	0.00029441	0.070842	4.0542E-05	0.58528	0.00033495	572.2897594941421	70.372	1.7135	70.433	70.104	71.817	0.060562					235	65	6	0	0	0	0.05573	1	16563	16563		42.095	0.13901	1	11704000	+		12472	12106	8257	8318	16910	16910					-0.0007679261682369543
LYGESPWGVT	10	Unmodified	_LYGESPWGVT_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7587890625	2	554.769114	1107.52368	0.41978	0.00023288	0.11399	6.3238E-05	0.53377	0.00029612	554.7688743772549	59.628	0.87679	59.7	59.52	60.397	0.072342					78	33	4	0	0	0	0.3077	1	13173	13173		21.747	2.3076	1	682190			12473	845	8258	8319	16911	16911					-0.025785536562807465
LYGFFFASL	9	Unmodified	_LYGFFFASL_					0	0	0		ENSG00000102384|ENST00000682095|CENPI;nc|ENSG00000102384|Q92674-2|CENPI	ENSG00000102384|ENST00000682095|CENPI	ENSG00000102384|ENST00000682095|CENPI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7764282226562	2	532.776211	1063.53787	0.36587	0.00019493	-0.68466	-0.00036477	-0.31879	-0.00016984	532.775887470352	101.7	0.39488	101.7	101.49	101.89	0					32	28	2	0	0	0	0.1182	1	26049	26049		28.487	11.545	1	59547			12474	1311	8259	8320	16912	16912					0.008641435626714156
LYGFFFASL	9	Unmodified	_LYGFFFASL_					0	0	0		ENSG00000102384|ENST00000682095|CENPI;nc|ENSG00000102384|Q92674-2|CENPI	ENSG00000102384|ENST00000682095|CENPI	ENSG00000102384|ENST00000682095|CENPI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7761840820312	2	532.776211	1063.53787	0.59179	0.00031529	-0.60663	-0.0003232	-0.014841	-7.9071E-06	532.7759251976051	101.63	0.32436	101.67	101.52	101.85	0.042656					33	25	2	0	0	0	0.16036	2	25888	25863;25888		23.148	6.2061	1	74509			12475	1311	8259	8320	16913;16914	16914					0.008641435626714156
LYGFFFASL	9	Unmodified	_LYGFFFASL_					0	0	0		ENSG00000102384|ENST00000682095|CENPI;nc|ENSG00000102384|Q92674-2|CENPI	ENSG00000102384|ENST00000682095|CENPI	ENSG00000102384|ENST00000682095|CENPI	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	532.776211	1063.53787	0.58492	0.00031163	-3.03	-0.0016143	-2.4451	-0.0013027	532.7754307804435	101.84	0.037827	101.88	101.86	101.9	0.042656	0.090833	-0.0023462	NaN	28.487	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17410			12476	1311	8259	8320							0.008641435626714156
LYGGRRCWN	9	Unmodified	_LYGGRRCWN_					0	0	0		ADAM19|p.G420W|1|0.25|ENSG00000135074|chr5:157502853-157502853|C/A|missense_variant	ADAM19|p.G420W|1|0.25|ENSG00000135074|chr5:157502853-157502853|C/A|missense_variant	ADAM19|p.G420W|1|0.25|ENSG00000135074|chr5:157502853-157502853|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3069458007812	2	562.774542	1123.53453	0.33079	0.00018616	-3.8213	-0.0021505	-3.4905	-0.0019644	562.7724347920307	56.626	0.34153	56.693	56.543	56.884	0.066452					19	11	2	0	0	0	0.2491	1	12151	12151		4.756	0	1	127180			12477	11	8260	8321	16915	16915					-0.022294297629741777
LYGHDVNFYL	10	Unmodified	_LYGHDVNFYL_					0	0	0			REV__ENSG00000147614|ENST00000285393|ATP6V0D2	REV__ENSG00000147614|ENST00000285393|ATP6V0D2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.80810546875	2	620.803488	1239.59242	0.27034	0.00016783	1.2678	0.00078704	1.5381	0.00095486	620.8035467413129	70.848	2.06	70.906	70.689	72.749	0.058578					197	74	5	0	0	0	0.29844	1	16741	16741		22.736	0.98964	1	2577700	+		12478	9575	8261	8322	16916	16916					-0.017788893565466424
LYGIDEIACI	10	Unmodified	_LYGIDEIACI_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-4|ANO1	REV__nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7484741210938	2	555.281	1108.54745	0.66801	0.00037094	-3.3718	-0.0018723	-2.7038	-0.0015014	555.2789788747613	69.433	0.46281	69.433	69.269	69.732	0					19	15	2	0	0	0	0.31551	1	16229	16229		11.64	4.9171	1	88992	+		12479	9091	8262	8323	16917	16917					-0.0024845621412623586
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF;GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.1957702636719	2	506.279118	1010.54368	0.47981	0.00024292	-0.7562	-0.00038285	-0.27639	-0.00013993	506.27899446217896	54.062	0.80871	54.062	53.659	54.467	0					75	29	4	0	0	0	0.099539	1	11533	11533		45.7	23.953	1	448290			12480	2208	8263	8324	16918	16918					0.038832420743119656
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF;GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.1957702636719	2	506.279118	1010.54368	0.46046	0.00023312	-0.60583	-0.00030672	-0.14537	-7.3598E-05	506.27891810569963	54.055	0.77578	54.12	53.69	54.466	0.065128					59	30	3	0	0	0	0.080641	1	11429	11429		51.63	31.176	1	388080			12481	2208	8263	8324	16919	16919					0.038832420743119656
LYGKQKSFLE	10	Unmodified	_LYGKQKSFLE_					0	0	0			REV__ENST00000477275.1_1_10:133959024-133981894:+|nuORF	REV__ENST00000477275.1_1_10:133959024-133981894:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7429809570312	2	606.834788	1211.65502	0.84696	0.00051396	1.0878	0.00066009	1.9347	0.001174	606.8353272773512	101.82	0.49678	101.87	101.66	102.15	0.042656					79	44	2	0	0	0	0.31712	1	25993	25993		6.7232	0	1	143520	+		12482	10767	8264	8325	16920	16920					0.05766256711626738
LYGKVMACQIL	11	Unmodified	_LYGKVMACQIL_					0	0	0			REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4	REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3085327148438	2	619.83542	1237.65629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.422	1	97.422	96.922	97.922	0								0	0	0	0.31731	1	24763	24763		8.7454	3.9894	1		+		12483	9930	8265	8326	16921	16921					0.046964314845126864
LYGPSSVSF	9	Unmodified	_LYGPSSVSF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7395324707031	2	478.739825	955.465098	0.31796	0.00015222	-0.37425	-0.00017917	-0.05629	-2.6948E-05	478.7396674366413	64.923	0.56503	64.923	64.688	65.253	0					30	20	2	0	0	0	0.0097093	2	14837	14837;14886		68.081	22.06	1	191470			12484	3392	8266	8327	16922;16923	16922					-0.01441610230756396
LYGPSSVSF	9	Unmodified	_LYGPSSVSF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.73974609375	2	478.739825	955.465098	0.17359	8.3102E-05	-0.17355	-8.3085E-05	3.5298E-05	1.6898E-08	478.73983124402497	64.848	0.49869	64.917	64.689	65.188	0.068916					25	18	2	0	0	0	0.10833	1	14706	14706		30.637	0	1	191080			12485	3392	8266	8327	16924	16924					-0.01441610230756396
LYGQGEIPQGF	11	Unmodified	_LYGQGEIPQGF_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.802490234375	2	604.800946	1207.58734	0.50421	0.00030494	0.70493	0.00042634	1.2091	0.00073129	604.8018583360807	87.168	0.5588	87.196	87.021	87.58	0.027573					61	22	4	0	0	0	0.28838	1	21469	21469		19.362	0	1	434290			12486	5440	8267	8328	16925	16925					-0.008151932192049571
LYGRDCDLGTF	11	Unmodified	_LYGRDCDLGTF_					0	0	0		ENST00000337714.7_1_17:55198527-55198593:+|nuORF	ENST00000337714.7_1_17:55198527-55198593:+|nuORF	ENST00000337714.7_1_17:55198527-55198593:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.2909545898438	2	630.289888	1258.56522	0.60259	0.0003798	0.36771	0.00023177	0.9703	0.00061157	630.2900802581485	80.189	1.4614	80.213	79.848	81.31	0.023605					87	47	2	0	0	0	0.32422	1	19409	19409		15.248	1.3424	1	1736200			12487	6077	8268	8329	16926	16926					-0.05371740959276394
LYGRLLVTF	9	Unmodified	_LYGRLLVTF_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.3240966796875	2	541.32386	1080.63317	0.55986	0.00030307	-0.065326	-3.5363E-05	0.49454	0.0002677	541.3237365747256	70.047	1.4487	70.047	69.791	71.239	0					122	52	4	0	0	0	0.00081324	3	16423	16377;16423;16471		126.57	61.331	1	1770000			12488	2592	8269	8330	16927;16928;16929	16928					0.09607496753687883
LYGRLLVTF	9	Unmodified	_LYGRLLVTF_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.323974609375	2	541.32386	1080.63317	0.53196	0.00028796	0.013651	7.3896E-06	0.54561	0.00029535	541.3237292820022	69.928	1.0072	69.988	69.723	70.73	0.060562					116	41	4	0	0	0	0.0034016	4	16242	16198;16242;16282;16328		107.19	48.508	1	1474400			12489	2592	8269	8330	16930;16931;16932;16933	16931					0.09607496753687883
LYGSASPLPA	10	Unmodified	_LYGSASPLPA_					0	0	0		ENST00000509378.1_1_4:165110937-165111516:+|nuORF	ENST00000509378.1_1_4:165110937-165111516:+|nuORF	ENST00000509378.1_1_4:165110937-165111516:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.9355163574219	2	488.260925	974.507297	-0.40555	-0.00019801	1.9799	0.00096672	1.5744	0.00076871	488.26154245143965	42.893	0.43747	42.893	42.682	43.119	0					26	14	2	0	0	0	0.31551	1	8183	8183		11.64	2.2929	1	77142			12490	6904	8270	8331	16934	16934					0.019023651776024053
LYGVFTIHF	9	Unmodified	_LYGVFTIHF_					0	0	0		nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.794921875	2	548.794935	1095.57532	0.35182	0.00019308	-0.048794	-2.6778E-05	0.30303	0.0001663	548.7948368386078	79.018	0.867	79.018	78.754	79.621	0					63	29	4	0	0	0	0.0037915	1	19136	19136		104.8	68.755	1	549280			12491	3494	8271	8332	16935	16935					0.031352348282553066
LYGVFTIHF	9	Unmodified	_LYGVFTIHF_					0	0	0		nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7952880859375	2	548.794935	1095.57532	0.3778	0.00020734	0.1884	0.00010339	0.5662	0.00031073	548.7948925498282	78.947	0.89268	78.978	78.759	79.652	0.030159					60	31	4	0	0	0	0.0010237	2	18967	18967;19013		123.1	84.945	1	689770			12492	3494	8271	8332	16936;16937	16936					0.031352348282553066
LYGWEERTLH	10	Unmodified	_LYGWEERTLH_					0	0	0			REV__ENST00000467680.5_1_7:99159903-99161679:+|nuORF	REV__ENST00000467680.5_1_7:99159903-99161679:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.882080078125	3	435.219172	1302.63569	0.13089	5.6965E-05	-0.44914	-0.00019547	-0.31825	-0.00013851	435.2190074136941	51.698	0.66616	51.767	51.424	52.091	0.069874					37	23	2	0	0	0	0.31833	1	10679	10679		2.086	0	1	54257	+		12493	12010	8272	8333	16938	16938					-0.0035269957929813245
LYHDALQNY	9	Unmodified	_LYHDALQNY_					0	0	0		nc|ENSG00000143595|Q96PS8-2|AQP10;ENSG00000143595|ENST00000324978|AQP10	nc|ENSG00000143595|Q96PS8-2|AQP10	nc|ENSG00000143595|Q96PS8-2|AQP10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2869262695312	2	568.772188	1135.52982	0.51194	0.00029118	0.65587	0.00037304	1.1678	0.00066422	568.7728389659072	54.323	0.22869	54.388	54.219	54.448	0.065128					9	7	2	0	0	0	0.25174	1	11459	11459		7.2892	0.56607	1	53301			12494	3171	8273	8334	16939	16939					-0.03252035424770838
LYHFLFRLF	9	Unmodified	_LYHFLFRLF_					0	0	0		chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|72	chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|72	chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|72	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.824951171875	2	628.352951	1254.69135	0.45511	0.00028597	-3.5526	-0.0022323	-3.0975	-0.0019463	628.3499678909483	64.033	0.257	64.104	63.973	64.23	0.071014					11	8	2	0	0	0	0.25504	1	14431	14431		4.756	1.1595	1	109290			12495	171	8274	8335	16940	16940					0.07419178398981785
LYHGLPDFR	9	Unmodified	_LYHGLPDFR_					0	0	0			REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2936401367188	2	559.293091	1116.57163	0.44259	0.00024754	0.69043	0.00038615	1.133	0.00063369	559.2934393736888	56.035	0.35134	56.035	55.866	56.217	0					26	12	3	0	0	0	0.1182	1	12171	12171		28.487	3.0875	1	206860	+		12496	8669	8275	8336	16941	16941					0.018005650544182572
LYHIFEEHF	9	Unmodified	_LYHIFEEHF_					0	0	0			REV__ENST00000513226.1_1_4:17812700-17814869:+|nuORF	REV__ENST00000513226.1_1_4:17812700-17814869:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.7669067382812	2	617.798206	1233.58186	-0.43303	-0.00026753	-2.5978	-0.0016049	-3.0309	-0.0018725	618.2980406361476	43.623	0.2916	43.712	43.581	43.873	0.088924					16	10	2	0	0	0	0.20004	1	8247	8247		23.148	10.106	1	41046	+		12497	8651	8276	8337	16942	16942					-0.025588720109908536
LYHKELPEN	9	Unmodified	_LYHKELPEN_					0	0	0		nc|ENSG00000170917|P53370-2|NUDT6;ENSG00000170917|ENST00000304430|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.79345703125	2	571.795663	1141.57677	0.28795	0.00016465	-1.3099	-0.00074902	-1.022	-0.00058437	571.7944644753625	37.645	0.42807	37.729	37.505	37.933	0.084476					26	13	3	0	0	0	0.33849	1	6436	6436		1.6526	0.17072	1	31451			12498	4418	8277	8338	16943	16943					0.011648241263856107
LYHLCQMF	8	Carbamidomethyl (C)	_LYHLC(Carbamidomethyl (C))QMF_	LYHLC(1)QMF		LYHLC(40)QMF		0	1	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7592163085938	2	556.256805	1110.49906	0.95225	0.0005297	0.35399	0.00019691	1.3062	0.00072661	556.2568252793579	66.89	0.49071	66.955	66.773	67.264	0.065071					31	16	2	0	0	0	0.22517	1	15313	15313		40.449	9.1802	1	357160			12499	993	8278	8339	16944	16944	2				-0.05177228335014661
LYHLQPIF	8	Unmodified	_LYHLQPIF_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7892456054688	2	515.789653	1029.56475	0.82198	0.00042397	-0.99924	-0.0005154	-0.17726	-9.1428E-05	515.7890362616046	66.315	0.42914	66.315	66.077	66.506	0					26	15	2	0	0	0	0.22517	3	15261	15261;15308;15316		40.449	14.107	1	146180	+		12500	13190	8279	8340	16945;16946;16947	16945					0.051152521738458745
LYHLQPIF	8	Unmodified	_LYHLQPIF_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.78955078125	2	515.789653	1029.56475	0.64397	0.00033215	-0.30964	-0.00015971	0.33433	0.00017245	515.7894710495035	66.258	0.39229	66.324	66.189	66.581	0.066872					25	14	2	0	0	0	0.3322	2	15123	15123;15161		32.117	11.76	1	119920	+		12501	13190	8279	8340	16948;16949	16948					0.051152521738458745
LYHLQPIF	8	Unmodified	_LYHLQPIF_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	515.789653	1029.56475	0.82198	0.00042397	-0.99924	-0.0005154	-0.17726	-9.1428E-05	515.7890362616046	66.315	0.42914	66.315	66.077	66.506	0	-0.004725	-0.00038588	NaN	40.449	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146180	+		12502	13190	8279	8340							0.051152521738458745
LYHLQPIF	8	Unmodified	_LYHLQPIF_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	515.789653	1029.56475	0.64397	0.00033215	-0.30964	-0.00015971	0.33433	0.00017245	515.7894710495035	66.258	0.39229	66.324	66.189	66.581	0.066872	0.004725	0.0003255	NaN	40.449	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119920	+		12503	13190	8279	8340							0.051152521738458745
LYHLTGAII	9	Unmodified	_LYHLTGAII_					0	0	0			REV__ENST00000360222.8_1_19:14854584-14867061:-|nuORF	REV__ENST00000360222.8_1_19:14854584-14867061:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2716369628906	2	500.794935	999.575317	0.33589	0.00016821	0.18046	9.0373E-05	0.51635	0.00025858	500.7949948298566	61.488	0.21079	61.488	61.305	61.516	0					10	8	2	0	0	0	0.24263	1	13812	13812		12.532	0	1	324950	+		12504	9000	8280	8341	16950	16950					0.07551234828292763
LYHLVEIH	8	Unmodified	_LYHLVEIH_					0	0	0			REV__ENSG00000097096|ENST00000341460|SYDE2	REV__ENSG00000097096|ENST00000341460|SYDE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2847290039062	2	512.284734	1022.55492	0.20586	0.00010546	-0.57635	-0.00029525	-0.37048	-0.00018979	512.2846877305147	49.689	0.45361	49.689	49.452	49.906	0					18	15	2	0	0	0	0.1928	1	10224	10224		42.968	2.5194	1	67342	+		12505	8351	8281	8342	16951	16951					0.044540641684761795
LYHLVEIH	8	Unmodified	_LYHLVEIH_					0	0	0			REV__ENSG00000097096|ENST00000341460|SYDE2	REV__ENSG00000097096|ENST00000341460|SYDE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2852172851562	2	512.284734	1022.55492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.613	1	49.689	49.189	50.189	0.076607								0	0	0	0.23375	1	10064	10064		49.669	2.748	1		+		12506	8351	8281	8342	16952	16952					0.044540641684761795
LYHNPCKL	8	Unmodified	_LYHNPCKL_					0	0	0			REV__ENSG00000164118|ENST00000503780|CEP44	REV__ENSG00000164118|ENST00000503780|CEP44	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.25830078125	2	494.257662	986.500772	0.30539	0.00015094	2.3329	0.001153	2.6383	0.001304	494.2588289791728	52.506	0.33992	52.506	52.305	52.645	0					14	11	2	0	0	0	0.52502	1	11101	11101		9.3474	0.75416	1	54639	+		12507	9981	8282	8343	16953	16953					0.006981487452435431
LYHNRREI	8	Unmodified	_LYHNRREI_					0	0	0			REV__ENSG00000140807|ENST00000268459|NKD1	REV__ENSG00000140807|ENST00000268459|NKD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2940063476562	2	550.801614	1099.58868	0.61841	0.00034062	4.2945	0.0023654	4.9129	0.002706	550.8052419723606	93.356	0.44006	93.393	93.195	93.635	0.037369					32	18	3	0	0	0	0.46036	1	23348	23348		18.135	3.5533	1	46885	+		12508	9382	8283	8344	16954	16954					0.04286485660236394
LYHNRREI	8	Unmodified	_LYHNRREI_					0	0	0			REV__ENSG00000140807|ENST00000268459|NKD1	REV__ENSG00000140807|ENST00000268459|NKD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2940063476562	2	550.801614	1099.58868	0.61841	0.00034062	4.2945	0.0023654	4.9129	0.002706	550.8052419723606	93.356	0.44006	93.393	93.195	93.635	0.037369					32	18	3	0	0	0	0.3528	1	23348	23348		18.135	3.5533	1	46885	+		12509	9382	8283	8344	16955	16955					0.04286485660236394
LYHSMHYYL	9	Unmodified	_LYHSMHYYL_					0	0	0		nc|ENSG00000111452|Q6QNK2-2|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1	nc|ENSG00000111452|Q6QNK2-2|ADGRD1	nc|ENSG00000111452|Q6QNK2-2|ADGRD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.8141479492188	2	613.786784	1225.55902	0.073881	4.5347E-05	-0.38331	-0.00023527	-0.30943	-0.00018993	614.2885923645538	71.169	0.70847	71.169	71.074	71.783	0					38	24	2	0	0	0	0.2404	1	16885	16885		13.508	4.1604	1	174470			12510	1706	8284	8345	16956	16956					-0.04474214400102028
LYIASCVICI	10	Unmodified	_LYIASCVICI_					0	0	0			REV__ENST00000536683.5_1_11:94966793-94966961:+|nuORF	REV__ENST00000536683.5_1_11:94966793-94966961:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2735595703125	2	549.290314	1096.56607	0.88595	0.00048664	-0.77012	-0.00042302	0.11583	6.3627E-05	549.2897642643619	80.613	0.94235	80.613	79.989	80.931	0					43	32	2	0	0	0	0.29236	1	19579	19579		23.148	1.4018	1	131920	+		12511	12386	8285	8346	16957	16957					0.02165382156067608
LYIAVQAVL	9	Unmodified	_LYIAVQAVL_					0	0	0		ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.3052673339844	2	495.305136	988.595718	0.41386	0.00020499	0.081307	4.0272E-05	0.49517	0.00024526	495.3051534253282	82.833	0.39957	82.855	82.617	83.017	0.021744					28	13	3	0	0	0	0.033885	1	20148	20148		48.346	23.672	1	205890			12512	1875	8286	8347	16958	16958					0.10096405488093296
LYIAYQFLL	9	Unmodified	_LYIAYQFLL_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3257446289062	2	572.326068	1142.63758	0.55653	0.00031852	-0.36176	-0.00020705	0.19477	0.00011147	572.325817935324	97.606	0.53348	97.606	97.461	97.995	0					54	25	3	0	0	0	0.1478	1	24813	24813		34.102	19.264	1	285230			12513	2813	8287	8348	16959	16959					0.0719696117660078
LYIAYQFLL	9	Unmodified	_LYIAYQFLL_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3263549804688	2	572.326068	1142.63758	0.55531	0.00031782	-0.48693	-0.00027868	0.068376	3.9133E-05	572.3258261894287	97.609	0.39018	97.65	97.38	97.77	0.040855					52	20	3	0	0	0	0.0099477	1	24664	24664		67.344	41.945	1	202770			12514	2813	8287	8348	16960	16960					0.0719696117660078
LYIAYQFLL	9	Unmodified	_LYIAYQFLL_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3262329101562	2	572.326068	1142.63758	0.54589	0.00031243	-0.36366	-0.00020813	0.18223	0.0001043	572.3259289395826	97.779	0.54441	97.82	97.755	98.3	0.040848					49	27	3	0	0	0	0.15911	1	24730	24730		32.305	16.458	1	130200			12515	2813	8287	8348	16961	16961					0.0719696117660078
LYIDFRQDLG	10	Unmodified	_LYIDFRQDLG_					0	0	0		ENST00000554980.5_1_14:76425532-76432102:-|nuORF;ENSG00000119699|ENST00000238682|TGFB3	ENST00000554980.5_1_14:76425532-76432102:-|nuORF	ENST00000554980.5_1_14:76425532-76432102:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3082885742188	2	620.322045	1238.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.584	1	96.584	96.084	97.084	0								0	0	0	0.33443	1	24509	24509		6.7232	1.4925	1				12516	2082	8288	8349	16962	16962					0.01976782189194637
LYIDYYYLL	9	Unmodified	_LYIDYYYLL_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3076782226562	2	619.820815	1237.62708	0.049147	3.0462E-05	-0.41744	-0.00025874	-0.3683	-0.00022828	620.3226577706441	55.668	0.40483	55.733	55.491	55.896	0.065128					19	14	2	0	0	0	0.16036	1	11872	11872		23.148	3.8914	1	63249	+		12517	8748	8289	8350	16963	16963					0.017769337315030498
LYIDYYYLL	9	Unmodified	_LYIDYYYLL_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8203735351562	2	619.820815	1237.62708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.461	1	18.551	18.051	19.051	0.089705								0	0	0	0.29525	1	1053	1053		0	0	1		+		12518	8748	8289	8350	16964	16964					0.017769337315030498
LYIDYYYLL	9	Unmodified	_LYIDYYYLL_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8206787109375	2	619.820815	1237.62708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.062	1	24.162	23.662	24.662	0.099739								0	0	0	0.29525	1	2458	2458		0	0	1		+		12519	8748	8289	8350	16965	16965					0.017769337315030498
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.8109130859375	2	593.810782	1185.60701	0.22604	0.00013423	-0.17524	-0.00010406	0.050801	3.0166E-05	593.810760929817	87.205	1.3383	87.205	86.95	88.288	0					146	51	5	0	0	0	1.5498E-07	4	21658	21615;21658;21707;21752		158.2	0	1	3049300			12520	2424	8290	8351	16966;16967;16968;16969	16967					0.02163182791559848
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.8109130859375	2	593.810782	1185.60701	0.34617	0.00020556	-0.77223	-0.00045856	-0.42607	-0.000253	593.8105552371046	88.597	1.1569	88.597	88.288	89.445	0					115	46	4	0	0	0	0.081719	1	22115	22115		49.933	0	1	1526100			12521	2424	8290	8351	16970	16970					0.02163182791559848
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.8109741210938	2	593.810782	1185.60701	0.12401	7.3636E-05	-0.073958	-4.3917E-05	0.050047	2.9718E-05	593.8108137785964	87.164	1.2775	87.192	86.944	88.222	0.027573					147	49	5	0	0	0	1.4799E-05	4	21492	21447;21492;21536;21584		144.35	0	1	4026200			12522	2424	8290	8351	16971;16972;16973;16974	16972					0.02163182791559848
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.8108520507812	2	593.810782	1185.60701	0.30326	0.00018008	-0.6933	-0.00041169	-0.39003	-0.0002316	593.8105840856409	88.596	1.3497	88.629	88.253	89.603	0.032257					122	53	4	0	0	0	1.1935E-05	2	21904	21904;22009		147.06	0	1	1485800			12523	2424	8290	8351	16975;16976	16975					0.02163182791559848
LYIGFHLDF	9	Unmodified	_LYIGFHLDF_					0	0	0			REV__ENST00000369626.7_1_1:113471860-113498806:-|nuORF	REV__ENST00000369626.7_1_1:113471860-113498806:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8104248046875	2	562.792392	1123.57023	0.017223	9.693E-06	1.457	0.00081998	1.4742	0.00082967	562.7924816364123	72.137	0.76991	72.137	71.948	72.718	0					80	26	4	0	0	0	0.24365	1	17221	17221		13.508	2.684	1	808110	+		12524	11584	8291	8352	16977	16977					0.013389309656531623
LYIGHLTTL	9	Unmodified	_LYIGHLTTL_					0	0	0		ENST00000542302.6_1_12:1519571-1599393:+|nuORF;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1	ENST00000542302.6_1_12:1519571-1599393:+|nuORF	ENST00000542302.6_1_12:1519571-1599393:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7996215820312	2	515.800217	1029.58588	0.36667	0.00018913	-0.19865	-0.00010246	0.16802	8.6666E-05	515.7999245537652	61.731	0.70389	61.731	61.551	62.255	0					75	34	3	0	0	0	0.004541	1	13841	13841		89.427	29.037	1	1108500			12525	924	8292	8353	16978	16978					0.07227217482704873
LYIGHLTTL	9	Unmodified	_LYIGHLTTL_					0	0	0		ENST00000542302.6_1_12:1519571-1599393:+|nuORF;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1	ENST00000542302.6_1_12:1519571-1599393:+|nuORF	ENST00000542302.6_1_12:1519571-1599393:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7998657226562	2	515.800217	1029.58588	0.33671	0.00017368	-0.16167	-8.339E-05	0.17504	9.0285E-05	515.7999886485496	61.609	0.75505	61.682	61.507	62.262	0.073421					86	40	3	0	0	0	0.0065046	1	13679	13679		77.984	17.595	1	743880			12526	924	8292	8353	16979	16979					0.07227217482704873
LYIGNLTWW	9	Unmodified	_LYIGNLTWW_					0	0	0		ENST00000550987.5_1_12:69633426-69648902:+|nuORF;ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.80859375	2	583.305667	1164.59678	0.63933	0.00037292	0.72243	0.0004214	1.3618	0.00079432	583.3064425672811	96.908	0.7832	96.908	96.604	97.387	0					97	37	4	0	0	0	0.0043658	1	24630	24630		96.111	69.227	1	711970			12527	1713	8293	8354	16980	16980					0.021066198569769767
LYIGNLTWW	9	Unmodified	_LYIGNLTWW_					0	0	0		ENST00000550987.5_1_12:69633426-69648902:+|nuORF;ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7845458984375	2	583.305667	1164.59678	0.77365	0.00045128	-0.2851	-0.0001663	0.48855	0.00028498	583.3063000562117	96.895	0.89262	96.934	96.632	97.525	0.039772					76	43	3	0	0	0	0.14331	1	24417	24417		36.127	12.337	1	585370			12528	1713	8293	8354	16981	16981					0.021066198569769767
LYIGWDKHYGF	11	Unmodified	_LYIGWDKHYGF_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.8994140625	3	466.89955	1397.67682	0.43206	0.00020173	-0.58423	-0.00027278	-0.15217	-7.1048E-05	466.89930047865244	63.364	1.3258	63.364	63.057	64.382	0					91	47	4	0	0	0	0.24828	2	14327	14327;14380		23.964	16.487	1	682380			12529	536	8294	8355	16982;16983	16982					-0.006109385398303857
LYIGWDKHYGF	11	Unmodified	_LYIGWDKHYGF_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.89947509765625	3	466.89955	1397.67682	0.19015	8.8779E-05	-0.33505	-0.00015643	-0.1449	-6.7655E-05	466.8993702437177	63.135	0.76268	63.208	63.036	63.799	0.072701					70	30	4	0	0	0	0.24828	2	14206	14155;14206		23.964	13.165	1	902220			12530	536	8294	8355	16984;16985	16985					-0.006109385398303857
LYIIGVALL	9	Unmodified	_LYIIGVALL_					0	0	0			REV__tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	REV__tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.8179626464844	2	487.817879	973.621205	0.07581	3.6981E-05	0.21908	0.00010687	0.29489	0.00014385	487.8179789978319	103.11	0.24284	103.11	103.01	103.25	0					25	15	2	0	0	0	0.23437	1	26515	26515		14.582	0	1	91728	+		12531	13139	8295	8356	16986	16986					0.13333880010532084
LYIIGVALL	9	Unmodified	_LYIIGVALL_					0	0	0			REV__tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	REV__tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.3195495605469	2	487.817879	973.621205	0.07581	3.6981E-05	0.21908	0.00010687	0.29489	0.00014385	487.8179789978319	103.11	0.24284	103.11	103.01	103.25	0					25	15	2	0	0	0	0.24749	1	26501	26501		9.3474	0	1	91728	+		12532	13139	8295	8356	16987	16987					0.13333880010532084
LYIIGVALL	9	Unmodified	_LYIIGVALL_					0	0	0			REV__tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	REV__tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.8179626464844	2	487.817879	973.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.08	1	103.12	102.62	103.62	0.040916								0	0	0	0.24995	1	26316	26316		9.3474	0	1		+		12533	13139	8295	8356	16988	16988					0.13333880010532084
LYIINLIF	8	Unmodified	_LYIINLIF_					0	0	0			REV__ENST00000302754.5_1_19:12903636-12903888:+|nuORF	REV__ENST00000302754.5_1_19:12903636-12903888:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.8098449707031	2	504.810054	1007.60555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.746	1	99.746	99.246	100.25	0								0	0	0	0.38822	1	25467	25467		9.3474	0	1		+		12534	11351	8296	8357	16989	16989					0.10205593493481047
LYINPEAFQN	10	Unmodified	_LYINPEAFQN_					0	0	0		nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-2|FSHR	nc|ENSG00000170820|P23945-2|FSHR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8021240234375	2	604.800946	1207.58734	0.46668	0.00028225	1.2753	0.00077131	1.742	0.0010536	604.8016970735754	87.172	0.43076	87.172	87.024	87.455	0					30	16	2	0	0	0	0.36848	1	21695	21695		15.248	2.206	1	304170			12535	4411	8297	8358	16990	16990					-0.008151932191822198
LYIPIFSTF	9	Unmodified	_LYIPIFSTF_					0	0	0		nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.80517578125	2	550.804968	1099.59538	0.33162	0.00018266	0.27469	0.0001513	0.60631	0.00033396	550.8050163734737	102.85	0.71897	102.85	102.6	103.32	0					126	49	4	0	0	0	0.0010237	5	26425	26380;26425;26463;26507;26541		123.1	62.707	1	651850			12536	3435	8298	8359	16991;16992;16993;16994;16995	16992					0.04956985768217237
LYIPIFSTF	9	Unmodified	_LYIPIFSTF_					0	0	0		nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8052368164062	2	550.804968	1099.59538	0.53836	0.00029653	0.090934	5.0087E-05	0.6293	0.00034662	550.8049356027586	102.78	0.60544	102.82	102.64	103.25	0.040909					122	52	3	0	0	0	0.0010237	5	26232	26192;26232;26270;26307;26342		123.1	62.707	1	497610			12537	3435	8298	8359	16996;16997;16998;16999;17000	16997					0.04956985768217237
LYIQTDHLFF	10	Unmodified	_LYIQTDHLFF_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.8352661132812	2	648.834788	1295.65502	0.28675	0.00018606	0.28946	0.00018781	0.57622	0.00037387	648.8350689965008	77.369	0.75385	77.369	77.204	77.958	0					37	32	2	0	0	0	4.1612E-05	2	18660	18660;18727		117.76	56.159	1	535770			12538	2875	8299	8360	17001;17002	17001					0.019022567116053324
LYIQTDHLFF	10	Unmodified	_LYIQTDHLFF_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.8350219726562	2	648.834788	1295.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.448	1	77.482	76.982	77.982	0.034485								0	0	0	0.0076419	1	18528	18528		83.429	35.834	1				12539	2875	8299	8360	17003	17003					0.019022567116053324
LYIRLCMKY	9	Unmodified	_LYIRLCMKY_					0	0	0			REV__nc|ENSG00000127191|Q12933-4|TRAF2	REV__nc|ENSG00000127191|Q12933-4|TRAF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3280029296875	2	601.824855	1201.63516	0.48252	0.00029039	-1.5106	-0.00090912	-1.0281	-0.00061873	601.8217411221062	74.412	1.5809	74.412	74.03	75.611	0					246	59	6	0	0	0	0.16036	2	17821	17821;17867		23.148	5.0134	1	2674200	+		12540	8993	8300	8361	17004;17005	17004					0.042404661756563655
LYISEVRNI	9	Unmodified	_LYISEVRNI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8137817382812	2	553.813856	1105.61316	0.75041	0.00041559	0.15373	8.5139E-05	0.90415	0.00050073	553.8140507261879	54.48	0.53078	54.48	54.296	54.827	0					35	24	2	0	0	0	0.0034419	1	11668	11668		106.94	48.261	1	281900			12541	7529;3480	8301	8362	17006	17006					0.06457701023077789
LYISEVRNI	9	Unmodified	_LYISEVRNI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8140869140625	2	553.813856	1105.61316	0.79092	0.00043802	0.018521	1.0257E-05	0.80944	0.00044828	553.8139378075545	54.471	0.50041	54.536	54.345	54.846	0.065128					42	26	2	0	0	0	0.0046221	1	11523	11523		86.332	44.492	1	314030			12542	7529;3480	8301	8362	17007	17007					0.06457701023077789
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.8232421875	2	508.823161	1015.63177	0.37743	0.00019204	-0.071152	-3.6204E-05	0.30628	0.00015584	508.82306224108294	100.35	0.77261	100.35	100.13	100.91	0					127	45	4	0	0	0	0.00014496	5	25653	25616;25653;25698;25738;25777		137.59	84.01	1	2009300			12543	3157	8302	8363	17008;17009;17010;17011;17012	17009					0.12457862664939512
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.8231506347656	2	508.823161	1015.63177	0.4567	0.00023238	-0.11665	-5.9356E-05	0.34005	0.00017302	508.82301372154166	100.36	0.65967	100.4	100.12	100.78	0.042839					115	37	4	0	0	0	0.00014496	4	25491	25451;25491;25534;25574		137.59	93.178	1	2069500			12544	3157	8302	8363	17013;17014;17015;17016	17014					0.12457862664939512
LYIVADHTL	9	Unmodified	_LYIVADHTL_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7716674804688	2	522.78985	1043.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.202	1	57.202	56.702	57.702	0								0	0	0	0.17567	1	12510	12510		21.747	2.4897	1				12545	3403	8303	8364	17017	17017					0.04510627103036313
LYIVEPLKF	9	Unmodified	_LYIVEPLKF_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3341064453125	2	561.333893	1120.65323	0.20171	0.00011322	0.15771	8.8526E-05	0.35941	0.00020175	561.333837603596	73.815	0.77026	73.815	73.63	74.4	0					63	27	4	0	0	0	0.012041	1	17583	17583		63.961	9.187	1	836800			12546	1091	8304	8365	17018	17018					0.09773247693647136
LYIVEPLKF	9	Unmodified	_LYIVEPLKF_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.334228515625	2	561.333893	1120.65323	0.45592	0.00025592	0.020172	1.1323E-05	0.47609	0.00026724	561.33382710957	73.766	0.75502	73.818	73.591	74.346	0.052567					55	27	4	0	0	0	0.012041	3	17397	17397;17455;17462		63.961	24.003	1	798360			12547	1091	8304	8365	17019;17020;17021	17019					0.09773247693647136
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(130)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7940673828125	2	568.794078	1135.5736	-0.13643	-7.7601E-05	0.32257	0.00018348	0.18614	0.00010588	568.7941190315121	58.85	0.41568	58.85	58.595	59.01	0					39	14	4	0	0	0	0.00052627	1	12993	12993		131.3	82.952	1	641130			12548	4618	8305	8366	17022	17022		271			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(150)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7935791015625	2	568.794078	1135.5736	0.048621	2.7655E-05	0.23215	0.00013205	0.28077	0.0001597	568.7941181131331	59.131	1.0862	59.131	58.931	60.017	0					84	40	3	0	0	0	1.3047E-05	2	13069	13069;13114		146.01	97.661	1	842680			12549	4618	8305	8366	17023;17024	17023		271			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(120)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7942504882812	2	568.794078	1135.5736	0.40067	0.0002279	0.014473	8.2322E-06	0.41514	0.00023613	568.7940849997965	60.542	1.3996	60.542	59.989	61.389	0					98	50	2	0	0	0	0.0017019	8	13602	13551;13602;13643;13678;13699;13717;13723;13760		117.6	69.253	1	811430			12550	4618	8305	8366	17025;17026;17027;17028;17029;17030;17031;17032	17026		271			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(100)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7942504882812	2	568.794078	1135.5736	0.16119	9.1686E-05	0.097902	5.5686E-05	0.2591	0.00014737	568.7940951070543	58.739	0.35598	58.809	58.561	58.917	0.070477					30	11	4	0	0	0	0.0037915	1	12826	12826		104.8	68.755	1	512650			12551	4618	8305	8366	17033	17033		271			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(93)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7939453125	2	568.794078	1135.5736	0.15668	8.9118E-05	-0.20813	-0.00011838	-0.05145	-2.9264E-05	568.7939557332853	59.022	0.60117	59.092	58.917	59.518	0.070473					60	23	3	0	0	0	0.004452	2	12970	12929;12970		92.822	60.368	1	627520			12552	4618	8305	8366	17034;17035	17035		271			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(93)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7943115234375	2	568.794078	1135.5736	0.18223	0.00010365	0.34912	0.00019858	0.53135	0.00030223	568.7943070273049	60.534	1.5344	60.607	59.853	61.388	0.073421					102	53	2	0	0	0	0.004452	3	13396	13396;13494;13542		92.822	55.324	1	729660			12553	4618	8305	8366	17036;17037;17038	17036		271			0.011238577480071399
LYIYPQSLNF	10	Unmodified	_LYIYPQSLNF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.3294677734375	2	629.329339	1256.64412	0.4786	0.0003012	-0.0097729	-6.1504E-06	0.46883	0.00029505	629.3291543851075	83.883	0.55603	83.883	83.686	84.242	0					56	18	4	0	0	0	0.020967	1	20657	20657		91.085	54.958	1	1082100			12554	1964	8306	8367	17039	17039					0.026068543373185094
LYIYPQSLNF	10	Unmodified	_LYIYPQSLNF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.2588500976562	2	629.329339	1256.64412	0.33094	0.00020827	-0.017202	-1.0826E-05	0.31374	0.00019745	629.3292493001522	83.881	0.54582	83.903	83.696	84.241	0.021751					58	19	4	0	0	0	0.097283	1	20462	20462		69.338	47.801	1	1075400			12555	1964	8306	8367	17040	17040					0.026068543373185094
LYIYYQIL	8	Unmodified	_LYIYYQIL_					0	0	0		nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;nc|ENSG00000164077|Q86VX9-3|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF	nc|ENSG00000164077|Q86VX9-2|MON1A	nc|ENSG00000164077|Q86VX9-2|MON1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8043823242188	2	544.804968	1087.59538	0.58016	0.00031607	-1.6457	-0.00089657	-1.0655	-0.00058049	544.8037628886188	97.484	0.37833	97.484	97.461	97.839	0					33	17	4	0	0	0	0.51887	1	24842	24842		10.183	0.83596	1	245340			12556	3979	8307	8368	17041	17041					0.05508985768233288
LYIYYQIL	8	Unmodified	_LYIYYQIL_					0	0	0		nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;nc|ENSG00000164077|Q86VX9-3|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF	nc|ENSG00000164077|Q86VX9-2|MON1A	nc|ENSG00000164077|Q86VX9-2|MON1A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	544.804968	1087.59538	0.58016	0.00031607	-1.6457	-0.00089657	-1.0655	-0.00058049	544.8037628886188	97.484	0.37833	97.484	97.461	97.839	0	0.01814	0.00075251	NaN	10.183	33	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245340			12557	3979	8307	8368							0.05508985768233288
LYIYYQIL	8	Unmodified	_LYIYYQIL_					0	0	0		nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;nc|ENSG00000164077|Q86VX9-3|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF	nc|ENSG00000164077|Q86VX9-2|MON1A	nc|ENSG00000164077|Q86VX9-2|MON1A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	544.804968	1087.59538	0.58952	0.00032117	-2.4372	-0.0013278	-1.8476	-0.0010066	544.8035901500907	97.407	0.52884	97.448	97.208	97.737	0.040855	-0.01814	-0.0001099	NaN	10.183	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403780			12558	3979	8307	8368							0.05508985768233288
LYKEDYHKT	9	Unmodified	_LYKEDYHKT_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8045043945312	2	598.800946	1195.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.353	1	83.353	82.853	83.853	0								0	0	0	0.27427	1	20484	20484		4.3292	0.38484	1				12559	4905	8308	8369	17042	17042					-0.0026319321921164374
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2950439453125	2	581.294965	1160.57538	0.49562	0.0002881	-0.81965	-0.00047646	-0.32404	-0.00018836	581.2945363464498	62.353	0.51764	62.353	62.175	62.693	0					48	18	3	0	0	0	0.018465	2	14076	14076;14121		59.368	28.732	1	432350			12560	2537	8309	8370	17043;17044	17043					0.001511900376272024
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2940063476562	2	581.294965	1160.57538	0.5497	0.00031954	-1.2984	-0.00075478	-0.74875	-0.00043525	581.2944531145667	62.236	0.66169	62.309	62.087	62.748	0.073421					53	22	3	0	0	0	0.023873	2	13897	13897;13949		55.503	31.293	1	314230			12561	2537	8309	8370	17045;17046	17045					0.001511900376272024
LYKEPTNEE	9	Unmodified	_LYKEPTNEE_					0	0	0		ENST00000464829.5_1_9:33469994-33473843:-|nuORF;nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8458251953125	2	561.769311	1121.52407	0.18256	0.00010256	-1.283	-0.00072077	-1.1005	-0.00061821	561.7680448768464	90.944	0.13603	90.979	90.909	91.045	0.035446					6	4	2	0	0	0	0.20845	1	22640	22640		21.747	3.6117	1	40797			12562	4071	8310	8371	17047	17047					-0.03183178727090308
LYKFSADEF	9	Unmodified	_LYKFSADEF_					0	0	0		ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2713623046875	2	560.27149	1118.52843	0.27384	0.00015343	0.18396	0.00010307	0.4578	0.00025649	560.2713130269822	58.18	0.24908	58.18	57.968	58.217	0					20	8	3	0	0	0	0.0047429	1	12788	12788		83.429	24.75	1	421730			12563	4658	8311	8372	17048	17048					-0.02609669513526569
LYKFSADEF	9	Unmodified	_LYKFSADEF_					0	0	0		ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.27099609375	2	560.27149	1118.52843	0.13113	7.3468E-05	0.62902	0.00035242	0.76015	0.00042589	560.2716523335412	58.373	0.33828	58.373	58.256	58.595	0					19	12	2	0	0	0	0.064247	3	12848	12838;12848;12888		40.239	11.158	1	212600			12564	4658	8311	8372	17049;17050;17051	17050					-0.02609669513526569
LYKFSADEF	9	Unmodified	_LYKFSADEF_					0	0	0		ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.271240234375	2	560.27149	1118.52843	0.3697	0.00020713	-0.26487	-0.0001484	0.10483	5.8734E-05	560.2712506087927	58.1	0.5036	58.17	57.943	58.446	0.070477					36	18	3	0	0	0	0.0040167	3	12624	12624;12671;12697		103.42	53.486	1	311700			12565	4658	8311	8372	17052;17053;17054	17052					-0.02609669513526569
LYKIGMELA	9	Unmodified	_LYKIGMELA_					0	0	0			REV__CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	REV__CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.2488403320312	2	519.288628	1036.5627	0.45666	0.00023714	-0.12602	-6.544E-05	0.33064	0.0001717	519.2885435294104	48.1	0.90763	48.18	47.663	48.571	0.080029					49	32	2	0	0	0	0.2446	1	9608	9608		11.64	0	1	75009	+		12566	7760	8312	8373	17055	17055					0.045884553737323586
LYKLRFVLTY	10	Unmodified	_LYKLRFVLTY_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2640075683594	3	439.263941	1314.76999	0.28908	0.00012698	-0.47616	-0.00020916	-0.18708	-8.2178E-05	439.26362652059055	63.309	0.48035	63.382	63.227	63.707	0.072365					25	18	2	0	0	0	0.44671	1	14218	14218		5.4027	0	1	104100			12567	5276	8313	8374	17056	17056					0.12519985913399978
LYKMCRMIL	9	Unmodified	_LYKMCRMIL_					0	0	0			REV__ENSG00000255151|ENST00000527482|GLYATL1B	REV__ENSG00000255151|ENST00000527482|GLYATL1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2583618164062	2	585.813433	1169.61231	0.69013	0.00040429	-0.40041	-0.00023456	0.28972	0.00016972	585.8131464768335	105.69	0.32967	105.72	105.5	105.83	0.029732					67	36	2	0	0	0	0.25579	1	27076	27076		4.3292	2.6766	1	125440	+		12568	11090	8314	8375	17057	17057					0.03429123786531818
LYKPDSNEF	9	Unmodified	_LYKPDSNEF_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.766357421875	2	556.766571	1111.51859	-0.25969	-0.00014459	0.23025	0.00012819	-0.029442	-1.6393E-05	556.7665227648312	42.442	0.66671	42.442	42.22	42.886	0					48	22	3	0	0	0	0.020768	3	8057	8007;8057;8103		57.722	32.323	1	360910			12569	4838	8315	8376	17058;17059;17060	17059					-0.03270857518896264
LYKPDSNEF	9	Unmodified	_LYKPDSNEF_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7666625976562	2	556.766571	1111.51859	-0.0030718	-1.7103E-06	0.22736	0.00012659	0.22429	0.00012488	556.7665298112889	42.384	0.64584	42.474	42.27	42.915	0.089764					48	23	3	0	0	0	0.020768	2	7904	7854;7904		57.722	32.323	1	310360			12570	4838	8315	8376	17061;17062	17062					-0.03270857518896264
LYKPGAKKKI	10	Unmodified	_LYKPGAKKKI_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3739624023438	2	573.373884	1144.73321	-0.09323	-5.3456E-05	0.10686	6.1269E-05	0.013626	7.813E-06	573.3740235710324	58.882	0.8541	58.882	58.506	59.36	0					38	30	2	0	0	0	0.28643	1	12977	12977		24.021	0	1	252480			12571	4901	8316	8377	17063	17063					0.16663734087524062
LYKRTSSSL	9	Unmodified	_LYKRTSSSL_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;PUM1|p.Y732Lfs*2|1|0.09|ENSG00000134644|chr1:30964802-30964803|-/A|frameshift_variant	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.24951171875	2	527.798206	1053.58186	-0.48517	-0.00025607	-0.11162	-5.8914E-05	-0.59679	-0.00031499	527.7981132956597	41.279	0.55211	41.279	41.075	41.627	0					37	20	3	0	0	0	0.2491	1	7658	7658		8.5933	0.68312	1	109800			12572	2680	8317	8378	17064	17064					0.05721127988999797
LYKSAFFYF	9	Unmodified	_LYKSAFFYF_					0	0	0		ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3030395507812	2	593.302593	1184.59063	0.3993	0.0002369	-0.84831	-0.00050331	-0.44901	-0.0002664	593.3023692776196	74.466	0.38497	74.515	74.316	74.701	0.048546					19	13	2	0	0	0	0.012041	1	17607	17607		63.961	31.507	1	326990			12573	4048	8318	8379	17065	17065					0.005721016254710776
LYKTIFEGF	9	Unmodified	_LYKTIFEGF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;ENST00000495701.1_1_1:3746348-3747783:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.757568359375	2	559.30005	1116.58555	0.49078	0.0002745	0.12969	7.2534E-05	0.62047	0.00034703	559.3000146159395	68.265	0.46239	68.265	68.095	68.558	0					24	15	2	0	0	0	0.18151	1	15889	15889		29.841	10.584	1	98086			12574	1948	8319	8380	17066	17066					0.031917977628836525
LYKTIFEGF	9	Unmodified	_LYKTIFEGF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;ENST00000495701.1_1_1:3746348-3747783:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7578735351562	2	559.30005	1116.58555	0.61628	0.00034469	-0.083315	-4.6598E-05	0.53297	0.00029809	559.2995941431144	68.202	0.38011	68.266	68.129	68.51	0.063507					22	13	2	0	0	0	0.15837	1	15728	15728		34.932	15.675	1	100500			12575	1948	8319	8380	17067	17067					0.031917977628836525
LYKVAELH	8	Unmodified	_LYKVAELH_					0	0	0			REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7796630859375	2	486.779285	971.544017	0.33891	0.00016498	-0.028432	-1.384E-05	0.31048	0.00015114	486.77916887538214	70.285	0.44081	70.285	70.114	70.555	0					28	16	2	0	0	0	0.37883	1	16535	16535		28.487	3.813	1	269570	+		12576	10525	8320	8381	17068	17068					0.057106617941940385
LYKVLIERS	9	Unmodified	_LYKVLIERS_					0	0	0			REV__nc|ENSG00000185917|Q9NVD3-3|SETD4	REV__nc|ENSG00000185917|Q9NVD3-3|SETD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8521118164062	2	560.839874	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.557	1	49.633	49.133	50.133	0.076607								0	0	0	0.2722	1	10047	10047		4.756	0	1		+		12577	10689	8321	8382	17069	17069					0.11014864436856442
LYKWLPQN	8	Unmodified	_LYKWLPQN_					0	0	0		ENSG00000197888|ENST00000317746|UGT2B17;ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000197888|ENST00000317746|UGT2B17	ENSG00000197888|ENST00000317746|UGT2B17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7696533203125	2	531.292559	1060.57057	0.59683	0.00031709	-0.24958	-0.0001326	0.34726	0.0001845	531.2922978429938	67.248	0.47324	67.248	66.987	67.46	0					33	17	3	0	0	0	0.35759	1	15584	15584		9.3474	0	1	89469			12578	5241	8322	8383	17070	17070					0.042703506855104933
LYKYHWKW	8	Unmodified	_LYKYHWKW_					0	0	0		nc|ENSG00000156103|P51512-2|MMP16	nc|ENSG00000156103|P51512-2|MMP16	nc|ENSG00000156103|P51512-2|MMP16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.7540893554688	2	612.321651	1222.62875	-0.13671	-8.3707E-05	-1.9093	-0.0011691	-2.046	-0.0012528	612.3193881018362	73.213	0.20128	73.213	73.053	73.254	0					8	6	2	0	0	0	0.3576	1	17398	17398		5.7604	0	1	83241			12579	7533	8323	8384	17071	17071					0.026340323307749713
LYLAFPLAF	9	Unmodified	_LYLAFPLAF_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.8024291992188	2	527.802229	1053.5899	0.012264	6.473E-06	0.30176	0.00015927	0.31403	0.00016574	527.8023348010767	105.96	0.45994	105.96	105.78	106.24	0					116	42	3	0	0	0	0.0099253	3	27316	27280;27316;27351		67.413	39.24	1	673110			12580	4491	8324	8385	17072;17073;17074	17073					0.06525306976436696
LYLAFPLAF	9	Unmodified	_LYLAFPLAF_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.80224609375	2	527.802229	1053.5899	0.27126	0.00014317	0.049445	2.6097E-05	0.32071	0.00016927	527.8021556125882	105.95	0.54137	105.98	105.77	106.32	0.029739					132	61	3	0	0	0	0.0058736	3	27126	27090;27126;27162		79.935	43.468	1	541100			12581	4491	8324	8385	17075;17076;17077	17076					0.06525306976436696
LYLAHVFYV	9	Unmodified	_LYLAHVFYV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8104248046875	2	562.810585	1123.60662	0.018796	1.0579E-05	-0.69234	-0.00038966	-0.67355	-0.00037908	562.8102848414078	72.796	1.3585	72.796	72.499	73.857	0					101	48	5	0	0	0	0.00046985	1	17221	17221		79.935	62.992	1	1550600			12582	3502	8325	8386	17078	17078					0.049758078623654
LYLAHVFYV	9	Unmodified	_LYLAHVFYV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.810302734375	2	562.810585	1123.60662	0.18373	0.0001034	-0.91882	-0.00051712	-0.73509	-0.00041371	562.810062617843	72.703	0.8539	72.759	72.514	73.368	0.055939					78	29	5	0	0	0	0.0030805	2	17060	17060;17107		109.15	86.006	1	1874700			12583	3502	8325	8386	17079;17080	17079					0.049758078623654
LYLCHSFCY	9	Unmodified	_LYLCHSFCY_					0	0	0			REV__TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant	REV__TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7498779296875	2	574.748813	1147.48307	0.67952	0.00039055	1.0882	0.00062542	1.7677	0.001016	574.7493706651188	80.465	0.60289	80.489	80.248	80.851	0.023613					50	21	3	0	0	0	0.20367	1	19497	19497		18.135	1.1927	1	725200	+		12584	9550	8326	8387	17081	17081					-0.08476934571922357
LYLCSAPPTF	10	Unmodified	_LYLCSAPPTF_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2945556640625	2	556.27826	1110.54197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.269	1	43.269	42.769	43.769	0								0	0	0	0.33092	1	8280	8280		10.824	2.2306	1		+		12585	8859	8327	8388	17082	17082					-0.008881350059482429
LYLCYTDVMK	10	Unmodified	_LYLCYTDVMK_					0	0	0		nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1;ENST00000411828.5_1_21:40547518-40555177:-|nuORF	nc|ENSG00000183527|O95456-2|PSMG1	nc|ENSG00000183527|O95456-2|PSMG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.6317138671875	2	624.803785	1247.59302	0.1364	8.5222E-05	-1.522	-0.00095097	-1.3856	-0.00086574	624.8028014023332	68.992	0.13648	69.054	68.945	69.082	0.062119					6	4	2	0	0	0	0.45794	1	15922	15922		3.2813	0.28607	1	163610			12586	4927	8328	8389	17083	17083					-0.02087554023410121
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7689819335938	2	530.769114	1059.52368	0.2002	0.00010626	-0.13195	-7.0035E-05	0.06825	3.6225E-05	530.768955420875	52.221	0.82341	52.221	51.989	52.813	0					71	28	4	0	0	0	8.832E-06	2	10976	10976;11019		149.99	0	1	730790			12587	1209	8329	8390	17084;17085	17084					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7689819335938	2	530.769114	1059.52368	0.34592	0.0001836	-0.35587	-0.00018889	-0.0099546	-5.2836E-06	530.7688005795695	52.172	0.85733	52.239	51.97	52.827	0.067173					78	33	4	0	0	0	0.0043613	1	10851	10851		96.285	0	1	597160			12588	1209	8329	8390	17086	17086					-0.0037055365628475556
LYLDKATLIW	10	Unmodified	_LYLDKATLIW_					0	0	0		nc|ENSG00000101888|Q9NPJ8-4|NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2;chrX:109535977-109536937|142|21.89|0.39|5.8|+|ENST00000218004|NXT2,NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3427124023438	2	618.355357	1234.69616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.277	1	76.277	75.777	76.777	0								0	0	0	0.22986	1	18327	18327		26.268	7.0112	1				12589	188	8330	8391	17087	17087					0.0882001775109984
LYLDKATLIW	10	Unmodified	_LYLDKATLIW_					0	0	0		nc|ENSG00000101888|Q9NPJ8-4|NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2;chrX:109535977-109536937|142|21.89|0.39|5.8|+|ENST00000218004|NXT2,NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3551025390625	2	618.355357	1234.69616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.255	1	76.295	75.795	76.795	0.03923								0	0	0	0.27728	1	18162	18162		20.415	1.1575	1				12590	188	8330	8391	17088	17088					0.0882001775109984
LYLEDFFVM	9	Oxidation (M)	_LYLEDFFVM(Oxidation (M))_		LYLEDFFVM(1)		LYLEDFFVM(82)	0	0	1		ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF;ENST00000462639.1_1_X:23803380-23803605:+|nuORF	ENSG00000130066|ENST00000379270|SAT1	ENSG00000130066|ENST00000379270|SAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7833251953125	2	596.783376	1191.5522	0.14813	8.8404E-05	0.44969	0.00026837	0.59783	0.00035677	596.7835567809816	95.49	0.85339	95.49	95.175	96.028	0					68	41	2	0	0	0	0.0053304	2	24189	24189;24219		81.613	73.703	1	578530			12591	2449	8331	8392	17089;17090	17089		155			-0.035915720713774135
LYLEDFFVM	9	Oxidation (M)	_LYLEDFFVM(Oxidation (M))_		LYLEDFFVM(1)		LYLEDFFVM(82)	0	0	1		ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF;ENST00000462639.1_1_X:23803380-23803605:+|nuORF	ENSG00000130066|ENST00000379270|SAT1	ENSG00000130066|ENST00000379270|SAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7836303710938	2	596.783376	1191.5522	0.052924	3.1584E-05	0.90406	0.00053953	0.95699	0.00057111	596.7836410650559	95.512	1.093	95.551	95.067	96.16	0.038872					88	50	2	0	0	0	0.0053304	2	24027	24027;24084		81.613	65.766	1	394070			12592	2449	8331	8392	17091;17092	17091		155			-0.035915720713774135
LYLEFLQKF	9	Unmodified	_LYLEFLQKF_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.8370361328125	2	600.8368	1199.65905	0.89264	0.00053633	-0.082621	-4.9642E-05	0.81002	0.00048669	600.8366454229445	81.01	0.99667	81.01	80.813	81.81	0					83	33	4	0	0	0	0.0022565	4	19762	19762;19809;19858;19920		114.2	70.343	1	1237800			12593	1938	8332	8393	17093;17094;17095;17096	17093					0.06720346205293026
LYLEFLQKF	9	Unmodified	_LYLEFLQKF_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8367309570312	2	600.8368	1199.65905	0.64086	0.00038505	0.2759	0.00016577	0.91677	0.00055083	600.8368634448263	81.07	0.88815	81.093	80.851	81.739	0.023605					78	31	4	0	0	0	0.0022565	3	19599	19599;19644;19691		114.2	61.933	1	1140500			12594	1938	8332	8393	17097;17098;17099	17097					0.06720346205293026
LYLENIDEF	9	Unmodified	_LYLENIDEF_					0	0	0		ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3	ENST00000532497.5_1_11:74303703-74322559:+|nuORF	ENST00000532497.5_1_11:74303703-74322559:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2822265625	2	578.282054	1154.54956	0.4819	0.00027867	0.10341	5.9799E-05	0.58531	0.00033847	578.2822099040345	79.785	0.7844	79.811	79.437	80.222	0.026436					53	25	3	0	0	0	4.5562E-09	1	19231	19231		168.66	48.208	1	740670			12595	863	8333	8394	17100	17100					-0.02153704204670248
LYLEQQVQF	9	Unmodified	_LYLEQQVQF_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2894287109375	2	584.305864	1166.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.181	1	72.181	71.681	72.681	0								0	0	0	0.22786	1	17071	17071		13.906	2.2658	1				12596	2466	8334	8395	17101	17101					0.020539947861834662
LYLEQQVQF	9	Unmodified	_LYLEQQVQF_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2889404296875	2	584.305864	1166.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.043	1	72.099	71.599	72.599	0.055939								0	0	0	0.24978	1	16875	16875		9.3831	0.035688	1				12597	2466	8334	8395	17102	17102					0.020539947861834662
LYLETHLSF	9	Unmodified	_LYLETHLSF_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.79638671875	2	561.795132	1121.57571	0.48599	0.00027303	0.62374	0.00035041	1.1097	0.00062344	561.7955507279913	102.77	0.46358	102.81	102.67	103.13	0.040916					67	37	3	0	0	0	0.21398	1	26272	26272		16.942	2.3606	1	98211			12598	3454	8335	8396	17103	17103					0.01978609757452432
LYLETHLSF	9	Unmodified	_LYLETHLSF_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	561.795132	1121.57571	0.27872	0.00015658	0.95864	0.00053856	1.2374	0.00069514	561.7956695643859	102.85	0.39369	102.85	102.71	103.1	0	0.017151	0.00025915	NaN	16.942	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110130			12599	3454	8335	8396							0.01978609757452432
LYLETHLSF	9	Unmodified	_LYLETHLSF_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	561.795132	1121.57571	0.48599	0.00027303	0.62374	0.00035041	1.1097	0.00062344	561.7955507279913	102.77	0.46358	102.81	102.67	103.13	0.040916	-0.017151	-0.00011714	NaN	16.942	67	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98211			12600	3454	8335	8396							0.01978609757452432
LYLEVFSML	9	Oxidation (M)	_LYLEVFSM(Oxidation (M))L_		LYLEVFSM(1)L		LYLEVFSM(75)L	0	0	1		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7935791015625	2	565.793743	1129.57293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.734	1	92.771	92.271	93.271	0.036774								0	0	0	0.0046483	1	23175	23175		74.929	31.071	1				12601	1939	8336	8397	17104	17104		115			0.013330183082871372
LYLGHFHLD	9	Unmodified	_LYLGHFHLD_					0	0	0		ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2854614257812	2	557.787641	1113.56073	0.61378	0.00034236	-0.70744	-0.0003946	-0.093659	-5.2242E-05	557.7864972752702	97.044	0.67071	97.044	96.768	97.438	0					51	32	2	0	0	0	0.25051	1	24590	24590		7.9102	0.62092	1	121420			12602	3548	8337	8398	17105	17105					0.008491626801287566
LYLGLFNRL	9	Unmodified	_LYLGLFNRL_					0	0	0		SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3310546875	2	554.829309	1107.64407	0.49299	0.00027353	-0.074184	-4.1159E-05	0.41881	0.00023237	554.8292189352261	76.488	0.93194	76.488	76.272	77.204	0					87	32	4	0	0	0	0.0042542	4	18370	18370;18415;18463;18518		100.37	47.511	1	2928800			12603	3878	8338	8399	17106;17107;17108;17109	17106					0.09454899127990757
LYLGLFNRL	9	Unmodified	_LYLGLFNRL_					0	0	0		SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8294677734375	2	554.829309	1107.64407	0.60002	0.00033291	-0.12514	-6.943E-05	0.47488	0.00026348	554.8291447323538	76.4	0.87069	76.44	76.285	77.156	0.03923					86	31	4	0	0	0	0.0025191	4	18197	18197;18247;18290;18345		112.59	55.122	1	3259200			12604	3878	8338	8399	17110;17111;17112;17113	17110					0.09454899127990757
LYLHYLRAE	9	Unmodified	_LYLHYLRAE_					0	0	0		ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT	ENSG00000160299|ENST00000359568|PCNT	ENSG00000160299|ENST00000359568|PCNT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.780029296875	2	589.321848	1176.62914	0.5298	0.00031222	0.18487	0.00010895	0.71467	0.00042117	589.322079556121	59.868	0.30843	59.868	59.81	60.119	0					16	10	2	0	0	0	0.2418	1	13316	13316		13.906	1.3745	1	87839			12605	3758	8339	8400	17114	17114					0.04789407259977452
LYLKALEGF	9	Unmodified	_LYLKALEGF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2916259765625	2	527.302593	1052.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.044	1	69.106	68.606	69.606	0.062126								0	0	0	0.025248	1	15961	15961		60.074	23.947	1				12606	1937	8340	8401	17115	17115					0.06644101625443
LYLKELLNL	9	Unmodified	_LYLKELLNL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.3465576171875	2	559.844625	1117.6747	0.52276	0.00029267	-0.35642	-0.00019954	0.16635	9.3129E-05	559.8444460375857	78.6	0.36666	78.63	78.451	78.818	0.030159					18	12	2	0	0	0	0.18398	1	18888	18888		20.415	0	1	248950			12607	3339	8341	8402	17116	17116					0.12056632722351424
LYLKPLSGGK	10	Unmodified	_LYLKPLSGGK_					0	0	0		nc|ENSG00000056586|Q9HBD1-4|RC3H2;ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-5|RC3H2;nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2403564453125	2	538.329142	1074.64373	0.45088	0.00024272	0.25706	0.00013838	0.70794	0.0003811	538.329071044782	68.261	0.62177	68.261	68.07	68.692	0					28	21	2	0	0	0	0.31708	1	15942	15942		7.609	1.4032	1	129200			12608	7455	8342	8403	17117	17117					0.10939479408125408
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19	ENST00000472309.1_1_4:179208113-179208287:+|nuORF	ENST00000472309.1_1_4:179208113-179208287:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8582763671875	2	590.858067	1179.70158	0.25158	0.00014865	0.16616	9.8178E-05	0.41774	0.00024682	590.8580729108342	50.702	1.1385	50.702	50.489	51.628	0					90	38	4	0	0	0	0.00025032	2	10518	10518;10571		99.799	44.296	1	963670			12609	1583	8343	8404	17118;17119	17118					0.118917413335339
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19	ENST00000472309.1_1_4:179208113-179208287:+|nuORF	ENST00000472309.1_1_4:179208113-179208287:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.858154296875	2	590.858067	1179.70158	0.39617	0.00023408	-0.015752	-9.3069E-06	0.38042	0.00022477	590.8579166285424	50.647	0.86222	50.72	50.5	51.362	0.07312					76	32	4	0	0	0	5.4648E-05	1	10358	10358		107.19	40.73	1	937490			12610	1583	8343	8404	17120	17120					0.118917413335339
LYLLAAGCLAL	11	Unmodified	_LYLLAAGCLAL_					0	0	0			REV__ENSG00000176022|ENST00000379198|B3GALT6	REV__ENSG00000176022|ENST00000379198|B3GALT6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8248291015625	2	560.825378	1119.6362	0.55793	0.0003129	-3.5957	-0.0020165	-3.0378	-0.0017036	560.8232955347164	70.117	0.12883	70.177	70.065	70.194	0.060562					8	5	2	0	0	0	0.2676	1	16293	16293		21.747	0	1	101100	+		12611	10393	8344	8405	17121	17121					0.08117003816187207
LYLLHVEI	8	Unmodified	_LYLLHVEI_					0	0	0		ENST00000514888.5_1_4:57301933-57301999:+|nuORF	ENST00000514888.5_1_4:57301933-57301999:+|nuORF	ENST00000514888.5_1_4:57301933-57301999:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7726745605469	2	500.29731	998.580068	0.43624	0.00021825	-0.26321	-0.00013168	0.17303	8.6564E-05	500.79861084543643	71.31	0.25731	71.31	71.158	71.415	0					12	8	2	0	0	0	0.35713	1	16802	16802		14.582	0	1	54652			12612	6931	8345	8406	17122	17122					0.08072118971040254
LYLLNWTCLW	10	Unmodified	_LYLLNWTCLW_					0	0	0		ENST00000535871.1_1_12:6958520-6958992:-|nuORF	ENST00000535871.1_1_12:6958520-6958992:-|nuORF	ENST00000535871.1_1_12:6958520-6958992:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.2328186035156	3	442.230132	1323.66857	0.42892	0.00018968	4.153	0.0018366	4.5819	0.0020263	442.23239446662774	53.371	0.70316	53.371	53.036	53.739	0					43	28	2	0	0	0	0.42184	1	11336	11336		9.544	1.0997	1	133590			12613	7043	8346	8407	17123	17123					0.019677912192037184
LYLLNWTCLW	10	Unmodified	_LYLLNWTCLW_					0	0	0		ENST00000535871.1_1_12:6958520-6958992:-|nuORF	ENST00000535871.1_1_12:6958520-6958992:-|nuORF	ENST00000535871.1_1_12:6958520-6958992:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.23223876953125	3	442.230132	1323.66857	0.28256	0.00012496	3.7224	0.0016462	4.005	0.0017711	442.2321683118165	53.377	0.75648	53.442	53.033	53.789	0.06543					58	36	3	0	0	0	0.42184	1	11183	11183		9.544	2.0669	1	181190			12614	7043	8346	8407	17124	17124					0.019677912192037184
LYLLYCPLAV	10	Unmodified	_LYLLYCPLAV_					0	0	0			REV__nc|ENSG00000108846|O15438-3|ABCC3	REV__nc|ENSG00000108846|O15438-3|ABCC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3294067382812	2	584.327753	1166.64095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.447	1	99.447	98.947	99.947	0								0	0	0	0.33341	1	25377	25377		7.9102	0	1		+		12615	8627	8347	8408	17125	17125					0.06429887958938707
LYLNLGLTF	9	Unmodified	_LYLNLGLTF_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL;ENST00000497613.2_1_8:145668058-145668220:-|nuORF	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.79443359375	2	527.302593	1052.59063	0.23973	0.00012641	0.34604	0.00018247	0.58577	0.00030888	527.3027597367462	95.742	0.19701	95.742	95.629	95.826	0					9	7	2	0	0	0	0.22912	1	24216	24216		18.146	2.2992	1	141810			12616	3786	8348	8409	17126	17126					0.06644101625443
LYLPHLTLF	9	Unmodified	_LYLPHLTLF_					0	0	0		ENST00000523237.1_1_8:1721944-1728730:+|nuORF;ENSG00000182372|ENST00000331222|CLN8	ENST00000523237.1_1_8:1721944-1728730:+|nuORF	ENST00000523237.1_1_8:1721944-1728730:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3002319335938	2	558.826235	1115.63792	0.70578	0.00039441	-0.97238	-0.00054339	-0.2666	-0.00014898	558.8258445593154	83.782	0.39249	83.782	83.658	84.051	0					19	12	2	0	0	0	0.2446	1	20602	20602		11.64	0	1	146720			12617	4873	8349	8410	17127	17127					0.08472380896455434
LYLPHLTLF	9	Unmodified	_LYLPHLTLF_					0	0	0		ENST00000523237.1_1_8:1721944-1728730:+|nuORF;ENSG00000182372|ENST00000331222|CLN8	ENST00000523237.1_1_8:1721944-1728730:+|nuORF	ENST00000523237.1_1_8:1721944-1728730:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.3002319335938	2	558.826235	1115.63792	0.45891	0.00025645	-0.38314	-0.00021411	0.075778	4.2347E-05	558.8262183678157	83.744	0.42138	83.766	83.589	84.01	0.021744					24	14	2	0	0	0	0.091303	1	20453	20453		44.407	21.259	1	216600			12618	4873	8349	8410	17128	17128					0.08472380896455434
LYLPMISIL	9	Unmodified	_LYLPMISIL_					0	0	0		TRMT5|p.I314Kfs*24|1|0.09|ENSG00000126814|chr14:60975963-60975978|TTCTTTGCTACTGGAA/-|frameshift_variant	TRMT5|p.I314Kfs*24|1|0.09|ENSG00000126814|chr14:60975963-60975978|TTCTTTGCTACTGGAA/-|frameshift_variant	TRMT5|p.I314Kfs*24|1|0.09|ENSG00000126814|chr14:60975963-60975978|TTCTTTGCTACTGGAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8173217773438	2	531.817021	1061.61949	0.84537	0.00044958	0.13119	6.9771E-05	0.97656	0.00051935	531.8170352696582	80.8	1.8388	80.8	80.197	82.036	0					130	63	3	0	0	0	0.31496	1	19872	19872		4.756	0.42677	1	548860			12619	13751	8350	8411	17129	17129					0.09114502930265189
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7950439453125	2	575.794601	1149.57465	0.44484	0.00025613	-0.20434	-0.00011766	0.2405	0.00013848	575.7945909904757	96.813	1.0788	96.813	96.359	97.438	0					207	50	5	0	0	0	8.2367E-09	5	24569	24529;24569;24612;24651;24695		161.89	114.97	1	14385000			12620	2849	8351	8412	17130;17131;17132;17133;17134	17131					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7942504882812	2	575.794601	1149.57465	0.57614	0.00033174	-0.9061	-0.00052173	-0.32996	-0.00018999	575.7941495683688	97.727	1.2057	97.727	97.461	98.667	0					82	62	2	0	0	0	0.065541	4	24883	24883;24927;25010;25121		39.957	27.426	1	287120			12621	2849	8351	8412	17135;17136;17137;17138	17135					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7947998046875	2	575.794601	1149.57465	0.50428	0.00029036	-1.5808	-0.0009102	-1.0765	-0.00061983	575.7940525831142	99.286	0.75134	99.286	98.681	99.433	0					67	49	2	0	0	0	0.092418	1	25169	25169		34.102	20.196	1	98998			12622	2849	8351	8412	17139	17139					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7952270507812	2	575.794601	1149.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.08	1	100.08	99.584	100.58	0								0	0	0	0.20792	1	25571	25571		16.942	8.349	1				12623	2849	8351	8412	17140	17140					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.795166015625	2	575.794601	1149.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.38	1	100.38	99.883	100.88	0								0	0	0	0.23884	1	25663	25663		11.64	6.8843	1				12624	2849	8351	8412	17141	17141					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.794677734375	2	575.794601	1149.57465	0.47572	0.00027392	-0.26702	-0.00015375	0.2087	0.00012017	575.794689903156	96.749	1.2422	96.789	96.527	97.769	0.039772					226	61	6	0	0	0	3.5265E-09	6	24445	24359;24403;24445;24488;24534;24620		170.55	123.63	1	20131000			12625	2849	8351	8412	17142;17143;17144;17145;17146;17147	17144					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7942504882812	2	575.794601	1149.57465	0.56106	0.00032306	-1.2967	-0.00074662	-0.73561	-0.00042356	575.7938519377209	97.904	0.57118	97.945	97.77	98.341	0.040855					40	29	2	0	0	0	0.024893	4	24729	24729;24778;24823;24864		54.774	37.661	1	270480			12626	2849	8351	8412	17148;17149;17150;17151	17148					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7958374023438	2	575.794601	1149.57465	0.54238	0.0003123	-2.0437	-0.0011768	-1.5013	-0.00086447	576.2944224260511	98.502	0.32318	98.544	98.482	98.805	0.041939					23	18	2	0	0	0	0.12809	1	24949	24949		26.884	12.302	1	100900			12627	2849	8351	8412	17152	17152					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7940673828125	2	575.794601	1149.57465	0.52716	0.00030354	-1.8749	-0.0010796	-1.3478	-0.00077604	575.7940072405845	98.952	0.68358	98.994	98.653	99.337	0.041939					62	43	2	0	0	0	0.22344	2	25046	24993;25046		15.847	10.115	1	110120			12628	2849	8351	8412	17153;17154	17154					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2938842773438	2	575.794601	1149.57465	0.42999	0.00024758	-2.3126	-0.0013316	-1.8826	-0.001084	576.2938446875963	102.2	0.38881	102.24	101.93	102.31	0.042656					40	31	2	0	0	0	0.26684	1	26018	26018		10.824	6.8795	1	113790			12629	2849	8351	8412	17155	17155					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7933349609375	2	575.794601	1149.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.21	1	100.25	99.748	100.75	0.042839								0	0	0	0.21527	1	25453	25453		15.847	4.2069	1				12630	2849	8351	8412	17156	17156					0.005843953885914743
LYLQELITI	9	Unmodified	_LYLQELITI_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3018798828125	2	553.328808	1104.64306	0.55365	0.00030635	-0.23145	-0.00012807	0.32221	0.00017829	553.328470999671	94.19	0.28659	94.19	94.084	94.371	0					27	13	3	0	0	0	0.1076	1	23785	23785		45.74	12.295	1	82924			12631	2811	8352	8413	17157	17157					0.09492639968425465
LYLQQNFEP	9	Unmodified	_LYLQQNFEP_					0	0	0		ENSG00000196553|ENST00000636229|CCDC196	ENSG00000196553|ENST00000636229|CCDC196	ENSG00000196553|ENST00000636229|CCDC196	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.773681640625	2	576.290214	1150.56587	0.19791	0.00011405	-0.64693	-0.00037282	-0.44902	-0.00025877	576.289721479325	59.467	0.81897	59.467	59.17	59.989	0					46	26	2	0	0	0	0.2298	1	13132	13132		16.942	1.0951	1	285570			12632	5233	8353	8414	17158	17158					-0.0033857824791994062
LYLQRVAEL	9	Unmodified	_LYLQRVAEL_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.8241577148438	2	552.824224	1103.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.986	1	58.986	58.486	59.486	0								0	0	0	0.066177	1	13046	13046		43.772	14.691	1				12633	1817	8354	8415	17159	17159					0.08622291402753035
LYLQSSVRI	9	Unmodified	_LYLQSSVRI_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8170166015625	2	539.816399	1077.61824	0.50344	0.00027177	0.15178	8.1935E-05	0.65522	0.0003537	539.8163601327869	55.621	0.29051	55.621	55.551	55.841	0					12	9	2	0	0	0	0.17428	2	12042	12023;12042		21.537	4.4241	1	83358			12634	311	8355	8416	17160;17161	17161					0.0825400488570267
LYLRGLVYL	9	Unmodified	_LYLRGLVYL_					0	0	0		ENST00000520482.1_1_8:142168222-142185717:+|nuORF;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3	ENST00000520482.1_1_8:142168222-142185717:+|nuORF	ENST00000520482.1_1_8:142168222-142185717:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3391723632812	2	555.33951	1108.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.037	1	74.037	73.537	74.537	0								0	0	0	0.097189	1	17638	17638		34.102	12.356	1				12635	1462	8356	8417	17162	17162					0.11448069787797976
LYLRGLVYL	9	Unmodified	_LYLRGLVYL_					0	0	0		ENST00000520482.1_1_8:142168222-142185717:+|nuORF;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3	ENST00000520482.1_1_8:142168222-142185717:+|nuORF	ENST00000520482.1_1_8:142168222-142185717:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.3404541015625	2	555.33951	1108.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.948	1	73.996	73.496	74.496	0.048546								0	0	0	0.13043	1	17457	17457		28.487	3.0875	1				12636	1462	8356	8417	17163	17163					0.11448069787797976
LYLRMDCKR	9	Unmodified	_LYLRMDCKR_					0	0	0			REV__ENST00000465664.1_1_3:121555513-121555606:+|nuORF	REV__ENST00000465664.1_1_3:121555513-121555606:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3152465820312	2	599.315186	1196.61582	0.28253	0.00016932	-0.42596	-0.00025528	-0.14343	-8.5959E-05	599.3149189049465	95.689	0.62628	95.689	95.56	96.187	0					71	31	3	0	0	0	0.31136	1	24319	24319		5.2307	0	1	203690	+		12637	11990	8357	8418	17164	17164					0.025375098847234767
LYLRMDCKR	9	Unmodified	_LYLRMDCKR_					0	0	0			REV__ENST00000465664.1_1_3:121555513-121555606:+|nuORF	REV__ENST00000465664.1_1_3:121555513-121555606:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.301513671875	2	599.315186	1196.61582	0.25328	0.0001518	-0.42359	-0.00025387	-0.17031	-0.00010207	599.3149049993015	95.612	0.71107	95.651	95.503	96.214	0.038872					68	35	3	0	0	0	0.31136	1	24203	24203		5.2307	0	1	222770	+		12638	11990	8357	8418	17165	17165					0.025375098847234767
LYLRMFKLK	9	Unmodified	_LYLRMFKLK_					0	0	0		nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-7|AFF2	nc|ENSG00000155966|P51816-7|AFF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3703002929688	2	606.370287	1210.72602	0.65229	0.00039553	-1.3765	-0.00083469	-0.72424	-0.00043916	606.3694630767825	91.05	0.34417	91.05	90.808	91.152	0					15	11	2	0	0	0	0.34646	1	22809	22809		0.6015	0.14316	1	80713			12639	3604	8358	8419	17166	17166					0.12908678215421787
LYLRMFKLK	9	Unmodified	_LYLRMFKLK_					0	0	0		nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-7|AFF2	nc|ENSG00000155966|P51816-7|AFF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3694458007812	2	606.370287	1210.72602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.055	1	91.09	90.59	91.59	0.035446								0	0	0	0.29233	1	22667	22667		0.6015	0	1				12640	3604	8358	8419	17167	17167					0.12908678215421787
LYLSDAEAQ	9	Unmodified	_LYLSDAEAQ_					0	0	0		nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7843322753906	2	505.245472	1008.47639	0.34433	0.00017397	3.5369	0.001787	3.8812	0.001961	505.2472687013064	74.854	0.48403	74.854	74.477	74.961	0					19	17	2	0	0	0	0.20004	1	17906	17906		23.148	3.8914	1	127830			12641	2628	8359	8420	17168	17168					-0.02750832927290503
LYLSTEIWGS	10	Unmodified	_LYLSTEIWGS_					0	0	0		ENSG00000185662|ENST00000523047|SMIM23	ENSG00000185662|ENST00000523047|SMIM23	ENSG00000185662|ENST00000523047|SMIM23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8131103515625	2	584.797872	1167.58119	0.67675	0.00039576	-0.4495	-0.00026287	0.22725	0.00013289	584.7975823600265	82.687	0.62523	82.687	82.454	83.079	0					50	21	4	0	0	0	0.38912	1	20276	20276		13.042	2.2185	1	374470			12642	5036	8360	8421	17169	17169					0.0041028854927844804
LYLTCAELLP	10	Unmodified	_LYLTCAELLP_					0	0	0			REV__ENST00000534146.5_1_1:76190451-76198848:+|nuORF	REV__ENST00000534146.5_1_1:76190451-76198848:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7784423828125	2	568.307018	1134.59948	0.40946	0.0002327	-2.2643	-0.0012868	-1.8548	-0.0010541	568.3055555021136	96.889	0.39877	96.889	96.678	97.077	0					38	20	3	0	0	0	0.27803	1	24607	24607		28.487	6.7402	1	214790	+		12643	12370	8361	8422	17170	17170					0.037567071996363666
LYLTKGCHWRP	11	Unmodified	_LYLTKGCHWRP_					0	0	0			REV__ENST00000514558.5_1_4:159133187-159133286:+|nuORF	REV__ENST00000514558.5_1_4:159133187-159133286:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.9105224609375	3	458.576413	1372.70741	0.32667	0.0001498	-1.1325	-0.00051936	-0.80588	-0.00036956	458.5758183959583	64.254	0.63488	64.325	64.115	64.75	0.071022					48	22	3	0	0	0	0.38613	1	14504	14504		7.4771	0.84669	1	369090	+		12644	12275	8362	8423	17171	17171					0.03596516573588815
LYLTKGCHWRP	11	Unmodified	_LYLTKGCHWRP_					0	0	0			REV__ENST00000514558.5_1_4:159133187-159133286:+|nuORF	REV__ENST00000514558.5_1_4:159133187-159133286:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	458.576413	1372.70741	0.64612	0.0002963	-1.4264	-0.00065409	-0.78023	-0.00035779	458.91014544838237	64.357	0.6783	64.357	64.137	64.816	0	0.016233	-0.00018684	NaN	7.4771	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310680	+		12645	12275	8362	8423							0.03596516573588815
LYLTKGCHWRP	11	Unmodified	_LYLTKGCHWRP_					0	0	0			REV__ENST00000514558.5_1_4:159133187-159133286:+|nuORF	REV__ENST00000514558.5_1_4:159133187-159133286:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	458.576413	1372.70741	0.32667	0.0001498	-1.1325	-0.00051936	-0.80588	-0.00036956	458.5758183959583	64.254	0.63488	64.325	64.115	64.75	0.071022	-0.016233	0.00021736	NaN	7.4771	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369090	+		12646	12275	8362	8423							0.03596516573588815
LYLVARAVKL	10	Unmodified	_LYLVARAVKL_					0	0	0			REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8751831054688	2	573.373884	1144.73321	0.18615	0.00010673	0.059463	3.4094E-05	0.24561	0.00014083	573.373841096688	58.574	0.49335	58.645	58.476	58.969	0.070477					34	16	3	0	0	0	0.29844	1	12792	12792		22.736	4.5899	1	330590	+		12647	9018	8363	8424	17172	17172					0.16663734087501325
LYLVFPVER	9	Unmodified	_LYLVFPVER_					0	0	0			REV__ENST00000594085.5_1_19:40871466-40871568:+|nuORF	REV__ENST00000594085.5_1_19:40871466-40871568:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7579345703125	2	568.329142	1134.64373	-0.0078552	-4.4644E-06	0.63813	0.00036267	0.63027	0.0003582	568.3292223591206	58.361	0.47775	58.361	58.256	58.734	0					27	17	3	0	0	0	0.24749	1	12961	12961		9.3474	0	1	179800	+		12648	12600	8364	8425	17173	17173					0.08179479408136103
LYLVLYLMT	9	Unmodified	_LYLVLYLMT_					0	0	0			REV__ENSG00000162407|ENST00000371250|PLPP3	REV__ENSG00000162407|ENST00000371250|PLPP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2174072265625	2	564.822304	1127.63005	0.63332	0.00035772	-1.5263	-0.00086208	-0.89297	-0.00050437	564.8212935993062	85.345	0.78647	85.368	85.007	85.794	0.023125					51	31	2	0	0	0	0.25051	1	21036	21036		7.9102	2.6795	1	481960	+		12649	9886	8365	8426	17174	17174					0.07134485584651884
LYLVNLYF	8	Unmodified	_LYLVNLYF_					0	0	0		ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1	ENSG00000136986|ENST00000259512|DERL1	ENSG00000136986|ENST00000259512|DERL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7911987304688	2	522.791861	1043.56917	0.39997	0.0002091	-2.4308	-0.0012708	-2.0309	-0.0010617	522.7904873077048	91.411	0.39261	91.411	91.209	91.602	0					24	14	2	0	0	0	0.35499	1	22925	22925		15.768	1.1865	1	169320			12650	2825	8366	8427	17175	17175					0.04912716596732025
LYLVTSLSF	9	Unmodified	_LYLVTSLSF_					0	0	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|53|1|anti-sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|53|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2803955078125	2	521.794601	1041.57465	0.35191	0.00018363	-1.0754	-0.00056111	-0.72344	-0.00037749	521.794181639049	90.957	0.46104	90.957	90.808	91.269	0					32	15	3	0	0	0	0.11022	1	22863	22863		30.225	2.596	1	1117400	+		12651	12668	8367	8428	17176	17176					0.05552395388554032
LYLWEHIFE	9	Unmodified	_LYLWEHIFE_					0	0	0		ENST00000536219.5_1_12:64173626-64178865:+|nuORF;ENSG00000118600|ENST00000261234|RXYLT1	ENST00000536219.5_1_12:64173626-64178865:+|nuORF	ENST00000536219.5_1_12:64173626-64178865:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.2572021484375	2	625.316232	1248.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.463	1	75.507	75.007	76.007	0.044037								0	0	0	0.23452	1	17918	17918		12.532	0.29089	1				12652	2041	8368	8429	17177	17177					0.0035458516586004407
LYLYERLSW	9	Unmodified	_LYLYERLSW_					0	0	0		nc|ENSG00000171109|Q8IWA4-3|MFN1;ENSG00000171109|ENST00000471841|MFN1	nc|ENSG00000171109|Q8IWA4-3|MFN1	nc|ENSG00000171109|Q8IWA4-3|MFN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7896728515625	2	621.829506	1241.64446	0.056779	3.5307E-05	-1.5292	-0.00095092	-1.4724	-0.00091561	621.8285618210955	91.407	0.29045	91.407	91.269	91.559	0					17	10	2	0	0	0	0.2491	1	22935	22935		8.5933	0	1	82877			12653	4427	8369	8430	17178	17178					0.033302740571798495
LYLYLQNPE	9	Unmodified	_LYLYLQNPE_					0	0	0		ENST00000498004.5_1_X:15768244-15782785:+|nuORF	ENST00000498004.5_1_X:15768244-15782785:+|nuORF	ENST00000498004.5_1_X:15768244-15782785:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8009643554688	2	576.800414	1151.58628	0.50076	0.00028884	0.17227	9.9364E-05	0.67303	0.0003882	576.8003806142166	55.36	1.2361	55.426	54.803	56.039	0.065128					77	47	2	0	0	0	0.29105	1	11718	11718		7.9102	2.6795	1	149120			12654	6849	8370	8431	17179	17179					0.01654592411887279
LYLYQLYF	8	Unmodified	_LYLYQLYF_					0	0	0			REV__ENST00000306999.6_1_7:16639609-16639795:-|nuORF	REV__ENST00000306999.6_1_7:16639609-16639795:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.796142578125	2	561.797143	1121.57973	0.27872	0.00015658	-2.6216	-0.0014728	-2.3429	-0.0013162	561.7956695643859	102.85	0.39369	102.85	102.71	103.1	0					43	27	2	0	0	0	0.45077	1	26404	26404		19.439	2.4967	1	110130	+		12655	11361	8371	8432	17180	17180					0.023806992511708813
LYLYRCIT	8	Unmodified	_LYLYRCIT_					0	0	0		nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000164023|ENST00000690982|SGMS2;ENSG00000198964|ENST00000361781|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3287353515625	2	522.78097	1043.54739	0.34801	0.00018193	0.97858	0.00051159	1.3266	0.00069352	522.7814715521772	91.051	0.51086	91.051	90.808	91.319	0					41	17	3	0	0	0	0.33102	1	22827	22827		32.117	15.175	1	801310			12656	3973	8372	8433	17181	17181					0.027355885765246057
LYLYRCIT	8	Unmodified	_LYLYRCIT_					0	0	0		nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000164023|ENST00000690982|SGMS2;ENSG00000198964|ENST00000361781|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2809448242188	2	522.78097	1043.54739	0.043333	2.2654E-05	1.0972	0.00057358	1.1405	0.00059623	522.7815791746315	91.032	0.76733	91.067	90.763	91.53	0.035446					62	27	4	0	0	0	0.41225	1	22734	22734		24.674	6.5389	1	921600			12657	3973	8372	8433	17182	17182					0.027355885765246057
LYMISVASFGF	11	Unmodified	_LYMISVASFGF_					0	0	0			REV__ENSG00000171135|ENST00000647897|JAGN1	REV__ENSG00000171135|ENST00000647897|JAGN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.8107299804688	2	617.812467	1233.61038	-0.15391	-9.5089E-05	-2.2222	-0.0013729	-2.3761	-0.001468	617.811238854316	86.579	0.42039	86.606	86.362	86.782	0.027573					26	19	2	0	0	0	0.37533	1	21266	21266		9.3831	1.473	1	167400	+		12658	10242	8373	8434	17183	17183					0.0029210957388841052
LYMISVASFGF	11	Unmodified	_LYMISVASFGF_					0	0	0			REV__ENSG00000171135|ENST00000647897|JAGN1	REV__ENSG00000171135|ENST00000647897|JAGN1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	617.812467	1233.61038	-0.37942	-0.00023441	-2.4503	-0.0015138	-2.8297	-0.0017482	617.8113338531543	86.616	0.30779	86.616	86.331	86.639	0	0.0050121	-0.00021312	NaN	9.3831	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150480	+		12659	10242	8373	8434							0.0029210957388841052
LYMISVASFGF	11	Unmodified	_LYMISVASFGF_					0	0	0			REV__ENSG00000171135|ENST00000647897|JAGN1	REV__ENSG00000171135|ENST00000647897|JAGN1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	617.812467	1233.61038	-0.15391	-9.5089E-05	-2.2222	-0.0013729	-2.3761	-0.001468	617.811238854316	86.579	0.42039	86.606	86.362	86.782	0.027573	-0.0050121	6.8712E-05	NaN	9.3831	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167400	+		12660	10242	8373	8434							0.0029210957388841052
LYMKPRMKI	9	Unmodified	_LYMKPRMKI_					0	0	0		nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.3418579101562	2	590.340672	1178.66679	0.62437	0.00036859	1.6419	0.00096926	2.2662	0.0013379	590.341697561763	53.94	0.61132	53.94	53.76	54.371	0					43	21	3	0	0	0	0.30005	1	11521	11521		6.7232	0.09279	1	128590			12661	2618	8374	8435	17184	17184					0.08460458929607739
LYMKPRMKI	9	Unmodified	_LYMKPRMKI_					0	0	0		nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3427124023438	2	590.340672	1178.66679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.95	1	54.015	53.515	54.515	0.065128								0	0	0	0.26267	1	11380	11380		6.7232	1.4263	1				12662	2618	8374	8435	17185	17185					0.08460458929607739
LYMLLFISF	9	Unmodified	_LYMLLFISF_					0	0	0			REV__nc|ENSG00000174970|Q8NH19|OR10AG1	REV__nc|ENSG00000174970|Q8NH19|OR10AG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2935180664062	2	573.817021	1145.61949	0.45847	0.00026308	2.7658	0.0015871	3.2243	0.0018502	573.8188841166998	67.526	0.2447	67.526	67.397	67.642	0					11	8	2	0	0	0	0.21515	1	15683	15683		13.508	0.97634	1	56982	+		12663	10368	8375	8436	17186	17186					0.05250502930243783
LYMNPYAESE	10	Unmodified	_LYMNPYAESE_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.7639770507812	2	608.763171	1215.51179	0.54127	0.0003295	0.33319	0.00020283	0.87445	0.00053234	608.7632332244315	75.376	0.4127	75.376	75.199	75.611	0					45	15	4	0	0	0	0.43672	1	18116	18116		7.2892	2.96	1	976700			12664	2415	8376	8437	17187	17187					-0.08734538461794727
LYMNSAFERE	10	Unmodified	_LYMNSAFERE_					0	0	0			REV__ENSG00000169840|ENST00000302945|GSX1	REV__ENSG00000169840|ENST00000302945|GSX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.290283203125	2	630.289888	1258.56522	0.66818	0.00042115	0.27286	0.00017198	0.94104	0.00059313	630.2900052880523	80.181	1.2764	80.181	79.926	81.202	0					82	43	2	0	0	0	0.20801	2	19504	19504;19558		32.786	5.8536	1	2786000	+		12665	10188	8377	8438	17188;17189	17188					-0.05371740959253657
LYMNSAFERE	10	Unmodified	_LYMNSAFERE_					0	0	0			REV__ENSG00000169840|ENST00000302945|GSX1	REV__ENSG00000169840|ENST00000302945|GSX1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	630.289888	1258.56522	0.66818	0.00042115	0.27286	0.00017198	0.94104	0.00059313	630.2900052880523	80.181	1.2764	80.181	79.926	81.202	0	-0.016096	-6.3583E-05	NaN	32.786	82	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2786000	+		12666	10188	8377	8438							-0.05371740959253657
LYMPKLLYF	9	Oxidation (M)	_LYM(Oxidation (M))PKLLYF_		LYM(1)PKLLYF		LYM(71)PKLLYF	0	0	1		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.313720703125	2	602.327753	1202.64095	0.12818	7.7203E-05	0.19031	0.00011463	0.31848	0.00019183	602.3278260860576	72.47	0.54143	72.47	72.258	72.799	0					63	18	5	0	0	0	0.0087214	2	17144	17144;17181		71.134	34.667	1	1548600			12667	4410	8378	8439	17190;17191	17190		265			0.04773887958981504
LYMPKLLYF	9	Oxidation (M)	_LYM(Oxidation (M))PKLLYF_		LYM(1)PKLLYF		LYM(82)PKLLYF	0	0	1		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3280029296875	2	602.327753	1202.64095	0.32112	0.00019342	0.13001	7.8308E-05	0.45113	0.00027173	602.3277396968336	72.367	0.57006	72.423	72.239	72.809	0.055931					64	19	5	0	0	0	0.0053304	3	16982	16964;16982;17006		81.613	33.184	1	2203200			12668	4410	8378	8439	17192;17193;17194	17193		265			0.04773887958981504
LYMPKLLYF	9	Unmodified	_LYMPKLLYF_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.3304443359375	2	594.330296	1186.64604	0.68123	0.00040487	-0.12424	-7.3838E-05	0.55699	0.00033104	594.3301041117774	81.767	1.3271	81.767	81.545	82.872	0					114	46	5	0	0	0	0.024893	3	19985	19985;20028;20081		54.774	33.902	1	1759000			12669	4410	8378	8440	17195;17196;17197	17195					0.06018191821590335
LYMPKLLYF	9	Unmodified	_LYMPKLLYF_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.3305053710938	2	594.330296	1186.64604	0.30347	0.00018036	0.16854	0.00010017	0.47201	0.00028053	594.3302957461988	81.79	1.1083	81.812	81.57	82.678	0.021858					95	39	5	0	0	0	0.024893	2	19861	19815;19861		54.774	33.902	1	2006900			12670	4410	8378	8440	17198;17199	17199					0.06018191821590335
LYMYKYQI	8	Unmodified	_LYMYKYQI_					0	0	0			REV__tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	REV__tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7747192382812	2	561.288628	1120.5627	0.56829	0.00031897	0.05112	2.8693E-05	0.61941	0.00034767	561.2888584236565	70.61	0.41258	70.61	70.325	70.737	0					18	14	2	0	0	0	0.35759	1	16624	16624		9.3474	0.75416	1	48688	+		12671	13073	8379	8441	17200	17200					0.007244553737336901
LYMYKYQI	8	Unmodified	_LYMYKYQI_					0	0	0			REV__tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	REV__tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	561.288628	1120.5627	0.63386	0.00035578	0.64598	0.00036258	1.2798	0.00071836	561.2890827769743	70.404	0.31987	70.464	70.257	70.577	0.060562	-0.073083	0.00037655	NaN	9.3474	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59887	+		12672	13073	8379	8441							0.007244553737336901
LYMYLNDEY	9	Unmodified	_LYMYLNDEY_					0	0	0			REV__nc|ENSG00000136531|Q99250-2|SCN2A	REV__nc|ENSG00000136531|Q99250-2|SCN2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5141296386719	3	408.514485	1222.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.079	1	76.079	75.579	76.579	0								0	0	0	0.27427	1	18265	18265		2.4985	0	1		+		12673	9245	8380	8442	17201	17201					-0.08073350456402295
LYNDHVVQF	9	Unmodified	_LYNDHVVQF_					0	0	0			REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.779541015625	2	567.782556	1133.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.192	1	69.192	68.692	69.692	0								0	0	0	0.19984	1	16160	16160		18.146	0.011366	1		+		12674	8737	8381	8443	17202	17202					-0.01087445045095592
LYNDPFFPLS	10	Unmodified	_LYNDPFFPLS_					0	0	0		TMEM181-HP1BP3|1|fusion;ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	TMEM181-HP1BP3|1|fusion	TMEM181-HP1BP3|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3009033203125	2	606.800414	1211.58628	0.76751	0.00046572	0.62213	0.00037751	1.3896	0.00084323	606.800870317511	81.938	1.9973	81.96	80.88	82.878	0.021866					141	71	3	0	0	0	0.44246	2	19755	19755;19803		6.2058	0	1	289030			12675	13432	8382	8444	17203;17204	17203					-0.011054075881020253
LYNEKGKEI	9	Unmodified	_LYNEKGKEI_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7570190429688	2	547.298039	1092.58152	0.37238	0.0002038	0.8517	0.00046613	1.2241	0.00066993	547.2986530327365	48.341	0.33277	48.421	48.274	48.607	0.080029					16	10	2	0	0	0	0.2491	1	9704	9704		8.5933	0	1	50253			12676	4421	8383	8445	17205	17205					0.0389370826915183
LYNEVYLFG	9	Unmodified	_LYNEVYLFG_					0	0	0			REV__ZBTB6|p.H312Y|1|0.06|ENSG00000186130|chr9:122911139-122911139|G/A|missense_variant	REV__ZBTB6|p.H312Y|1|0.06|ENSG00000186130|chr9:122911139-122911139|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7578735351562	2	559.281857	1116.54916	0.65629	0.00036705	1.9375	0.0010836	2.5938	0.0014507	559.2835228515748	68.04	0.44668	68.103	67.961	68.408	0.063507					25	16	2	0	0	0	0.24749	1	15728	15728		9.3474	0.75416	1	81607	+		12677	13336	8384	8446	17206	17206					-0.004450791338740601
LYNFHRML	8	Unmodified	_LYNFHRML_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2861938476562	2	547.284211	1092.55387	-0.11372	-6.2236E-05	1.3999	0.00076612	1.2861	0.00070388	547.2857920996258	27.727	0.23141	27.727	27.627	27.859	0					23	15	2	0	0	0	0.53423	1	3620	3620		5.2307	0.90143	1	16154	+		12678	8767	8385	8447	17207	17207					0.011295265279159139
LYNGKLIE	8	Unmodified	_LYNGKLIE_					0	0	0		tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1	tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1	tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2713623046875	2	475.271293	948.528032	-0.47336	-0.00022498	0.48253	0.00022933	0.0091654	4.356E-06	475.271435594001	40.323	0.50938	40.323	40.18	40.69	0					34	17	3	0	0	0	0.46914	1	7386	7386		16.942	0	1	65932			12679	13650	8386	8448	17208	17208					0.05170955557287016
LYNGKLIE	8	Unmodified	_LYNGKLIE_					0	0	0		tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1	tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1	tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2716369628906	2	475.271293	948.528032	-0.35536	-0.00016889	0.97007	0.00046105	0.6147	0.00029215	475.27154212255084	40.238	0.35374	40.328	40.164	40.518	0.089645					32	13	3	0	0	0	0.46914	1	7235	7235		16.942	0	1	61300			12680	13650	8386	8448	17209	17209					0.05170955557287016
LYNKIREDF	9	Unmodified	_LYNKIREDF_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8189697265625	2	599.316763	1196.61897	-0.056697	-3.3979E-05	0.96654	0.00057926	0.90984	0.00054528	599.3173324483578	40.087	0.21983	40.176	40.064	40.284	0.088562					12	8	2	0	0	0	0.32831	1	7185	7185		2.9952	1.151	1	26734			12681	4923	8387	8449	17210	17210					0.028527995347531032
LYNKIREDF	9	Unmodified	_LYNKIREDF_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	599.316763	1196.61897	-0.1501	-8.9955E-05	0.62002	0.00037159	0.46992	0.00028163	599.3169601641223	40.196	0.36275	40.196	40.012	40.375	0	0.010186	-0.0002361	NaN	2.9952	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31044			12682	4923	8387	8449							0.028527995347531032
LYNLKTLWF	9	Unmodified	_LYNLKTLWF_					0	0	0			REV__ENST00000256474.2_1_3:10188218-10191482:+|nuORF	REV__ENST00000256474.2_1_3:10188218-10191482:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7920532226562	2	599.336967	1196.65938	0.43657	0.00026166	0.21529	0.00012903	0.65187	0.00039069	599.8388898457408	82.887	0.17056	82.887	82.757	82.928	0					8	5	2	0	0	0	0.25416	1	20315	20315		5.2307	0	1	42394	+		12683	11216	8388	8450	17211	17211					0.0689176592518379
LYNLLSEPLVL	11	Unmodified	_LYNLLSEPLVL_					0	0	0			REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF	REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3735961914062	2	637.373746	1272.73294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.21	1	102.21	101.71	102.71	0								0	0	0	0.33503	1	26219	26219		2.4985	0.65425	1		+		12684	11201	8389	8451	17212	17212					0.10748269576993152
LYNNSLVIF	9	Unmodified	_LYNNSLVIF_					0	0	0			REV__nc|ENSG00000149294|P13591-6|NCAM1	REV__nc|ENSG00000149294|P13591-6|NCAM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7575073242188	2	541.797675	1081.5808	0.56599	0.00030665	-0.88804	-0.00048114	-0.32206	-0.00017449	541.79709485939	64.366	0.55078	64.366	64.137	64.688	0					31	18	3	0	0	0	0.14331	1	14668	14668		36.127	5.4905	1	136690	+		12685	9610	8390	8452	17213	17213					0.04326913620070627
LYNPKITSEL	10	Unmodified	_LYNPKITSEL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3267822265625	2	589.326796	1176.63904	0.30653	0.00018065	0.23461	0.00013826	0.54114	0.00031891	589.3268579883292	52.35	0.62617	52.35	52.162	52.788	0					43	21	3	0	0	0	0.015562	1	11021	11021		71.708	33.532	1	318160			12686	891	8391	8453	17214	17214					0.057785504747243976
LYNPVEGLL	9	Unmodified	_LYNPVEGLL_					0	0	0			REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF	REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.28460693359375	2	509.2844	1016.55425	0.57323	0.00029194	0.18205	9.2717E-05	0.75528	0.00038465	509.2845157914118	65.136	0.25218	65.136	65.001	65.253	0					16	8	2	0	0	0	0.24767	1	14930	14930		13.042	1.5478	1	58105	+		12687	11984	8392	8454	17215	17215					0.04663224728778914
LYNPVEGLL	9	Unmodified	_LYNPVEGLL_					0	0	0			REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF	REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2837219238281	2	509.2844	1016.55425	0.42794	0.00021794	-0.038551	-1.9634E-05	0.38939	0.00019831	509.78610208448396	65.108	0.29993	65.177	64.987	65.287	0.068916					16	11	2	0	0	0	0.24767	1	14777	14777		13.042	1.5478	1	92151	+		12688	11984	8392	8454	17216	17216					0.04663224728778914
LYNPVEGLL	9	Unmodified	_LYNPVEGLL_					0	0	0			REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF	REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	509.2844	1016.55425	0.57323	0.00029194	0.18205	9.2717E-05	0.75528	0.00038465	509.2845157914118	65.136	0.25218	65.136	65.001	65.253	0	-0.020701	6.42E-05	NaN	13.042	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58105	+		12689	11984	8392	8454							0.04663224728778914
LYNPVEGLL	9	Unmodified	_LYNPVEGLL_					0	0	0			REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF	REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.2844	1016.55425	0.42794	0.00021794	-0.038551	-1.9634E-05	0.38939	0.00019831	509.78610208448396	65.108	0.29993	65.177	64.987	65.287	0.068916	0.020701	-0.0001605	NaN	13.042	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92151	+		12690	11984	8392	8454							0.04663224728778914
LYNPYWTAL	9	Unmodified	_LYNPYWTAL_					0	0	0		ENST00000560288.1_1_15:51040303-51057772:-|nuORF;SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant;ENSG00000138600|ENST00000261854|SPPL2A	ENST00000560288.1_1_15:51040303-51057772:-|nuORF	ENST00000560288.1_1_15:51040303-51057772:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8064575195312	2	570.78985	1139.56515	0.7859	0.00044859	-0.27438	-0.00015661	0.51152	0.00029197	570.7897906971621	80.7	0.83135	80.7	80.313	81.145	0					75	28	4	0	0	0	0.11547	1	19646	19646		29.082	14.243	1	511390			12691	2917	8393	8455	17217	17217					0.0009462710304433131
LYNPYWTAL	9	Unmodified	_LYNPYWTAL_					0	0	0		ENST00000560288.1_1_15:51040303-51057772:-|nuORF;SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant;ENSG00000138600|ENST00000261854|SPPL2A	ENST00000560288.1_1_15:51040303-51057772:-|nuORF	ENST00000560288.1_1_15:51040303-51057772:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8062744140625	2	570.78985	1139.56515	0.63836	0.00036437	0.13224	7.5479E-05	0.7706	0.00043985	570.7899225428444	80.659	0.72903	80.683	80.407	81.136	0.023605					67	25	4	0	0	0	0.18364	1	19456	19456		20.454	9.6297	1	522820			12692	2917	8393	8455	17218	17218					0.0009462710304433131
LYNQELKKW	9	Unmodified	_LYNQELKKW_					0	0	0			REV__ENST00000292535.11_1_7:101747723-101758522:+|nuORF	REV__ENST00000292535.11_1_7:101747723-101758522:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.8930969238281	3	407.892396	1220.65536	0.6378	0.00026015	0.8775	0.00035793	1.5153	0.00061808	407.89278516840966	74.695	0.92575	74.695	74.4	75.326	0					82	34	4	0	0	0	0.33028	1	17855	17855		2.7352	0.64919	1	800600	+		12693	11322	8394	8456	17219	17219					0.05385676431478714
LYNQELKKW	9	Unmodified	_LYNQELKKW_					0	0	0			REV__ENST00000292535.11_1_7:101747723-101758522:+|nuORF	REV__ENST00000292535.11_1_7:101747723-101758522:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.8930358886719	3	407.892396	1220.65536	0.6378	0.00026015	0.8775	0.00035793	1.5153	0.00061808	407.89278516840966	74.695	0.92575	74.695	74.4	75.326	0					82	34	4	0	0	0	0.25822	1	17962	17962		2.7352	0.89096	1	800600	+		12694	11322	8394	8456	17220	17220					0.05385676431478714
LYNQELKKW	9	Unmodified	_LYNQELKKW_					0	0	0			REV__ENST00000292535.11_1_7:101747723-101758522:+|nuORF	REV__ENST00000292535.11_1_7:101747723-101758522:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	407.892396	1220.65536	0.20784	8.4777E-05	1.5592	0.00063598	1.767	0.00072075	407.89292652182183	74.725	0.61024	74.773	74.45	75.061	0.048546	0.039124	0.00032165	NaN	2.7352	72	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	880070	+		12695	11322	8394	8456							0.05385676431478714
LYNQLSDTF	9	Unmodified	_LYNQLSDTF_					0	0	0			REV__nc|ENSG00000188848|Q6ZU67-5|BEND4	REV__nc|ENSG00000188848|Q6ZU67-5|BEND4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.767333984375	2	550.766571	1099.51859	0.30464	0.00016779	-0.46427	-0.00025571	-0.15963	-8.792E-05	550.7664349591886	90.118	0.94753	90.118	89.86	90.808	0					84	37	3	0	0	0	0.26684	1	22656	22656		10.824	0.64053	1	2719000	+		12696	10780	8395	8457	17221	17221					-0.02718857518925688
LYNQRLRLQ	9	Unmodified	_LYNQRLRLQ_					0	0	0		nc|ENSG00000183628|Q14129-2|DGCR6;ENSG00000183628|ENST00000331444|DGCR6;ENSG00000128185|ENST00000248879|DGCR6L	nc|ENSG00000183628|Q14129-2|DGCR6	nc|ENSG00000183628|Q14129-2|DGCR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3519287109375	2	602.351471	1202.68839	0.34365	0.000207	0.011109	6.6915E-06	0.35476	0.00021369	602.3513784445686	36.491	0.7258	36.491	36.312	37.038	0					53	27	3	0	0	0	0.3182	2	6280	6280;6379		4.3292	0	1	117350			12697	2386	8396	8458	17222;17223	17222					0.09515303274179132
LYNQVELF	8	Unmodified	_LYNQVELF_					0	0	0			REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1	REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2675170898438	2	513.26875	1024.52295	0.20584	0.00010565	-1.4663	-0.0007526	-1.2604	-0.00064694	513.2678984748944	71.773	0.78496	71.773	71.502	72.287	0					51	27	3	0	0	0	0.46036	1	16964	16964		18.135	0	1	268060	+		12698	13315	8397	8459	17224	17224					0.011666516946434058
LYNRLTHL	8	Unmodified	_LYNRLTHL_					0	0	0			REV__ENSG00000151379|ENST00000281047|MSGN1	REV__ENSG00000151379|ENST00000281047|MSGN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7293701171875	2	515.295633	1028.57671	0.054249	2.7954E-05	0.54731	0.00028203	0.60156	0.00030998	515.2959071983443	33.62	0.42023	33.695	33.479	33.9	0.074322					25	17	2	0	0	0	0.3576	1	5275	5275		4.3292	2.0265	1	34043	+		12699	9644	8398	8460	17225	17225					0.06356868917032443
LYNRTMVQL	9	Oxidation (M)	_LYNRTM(Oxidation (M))VQL_		LYNRTM(1)VQL		LYNRTM(42)VQL	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3056640625	2	577.305341	1152.59613	-0.14598	-8.4277E-05	-0.51897	-0.00029961	-0.66496	-0.00038388	577.3051238686477	44.551	1.0908	44.551	44.147	45.238	0					76	38	3	0	0	0	0.056368	1	8632	8632		41.956	17.935	1	171870			12700	4957	8399	8461	17226	17226		289			0.025934571456446065
LYNRVYRF	8	Unmodified	_LYNRVYRF_					0	0	0		ENST00000374561.5_1_1:23884502-23884709:-|nuORF	ENST00000374561.5_1_1:23884502-23884709:-|nuORF	ENST00000374561.5_1_1:23884502-23884709:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.28515625	2	565.808908	1129.60326	0.098141	5.5529E-05	-3.0969	-0.0017523	-2.9988	-0.0016967	566.3082594294535	72.417	0.39798	72.473	72.296	72.694	0.055939					28	13	3	0	0	0	0.35713	1	17047	17047		14.582	0	1	111830			12701	6234	8400	8462	17227	17227					0.043645578083669534
LYNSGYDGYF	10	Unmodified	_LYNSGYDGYF_					0	0	0			REV__ENSG00000126550|ENST00000246896|HTN1	REV__ENSG00000126550|ENST00000246896|HTN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7562255859375	2	599.756204	1197.49785	0.67819	0.00040675	-0.79716	-0.0004781	-0.11897	-7.1355E-05	599.7556619918	82.07	0.49465	82.07	81.931	82.426	0					36	17	3	0	0	0	0.31691	1	20102	20102		7.2892	1.5574	1	179470	+		12702	8988	8401	8463	17228	17228					-0.09299447898570179
LYNVISLEF	9	Unmodified	_LYNVISLEF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000528380.1_1_11:66975039-66982918:+|nuORF;nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000538503.5_1_12:121882954-121987523:-|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2984619140625	2	549.297507	1096.58046	0.40375	0.00022178	0.76473	0.00042006	1.1685	0.00064184	549.2979956362154	88.837	1.0344	88.837	88.232	89.267	0					98	41	3	0	0	0	0.17428	1	22216	22216		21.537	7.6309	1	168190			12703	4527;1027	8402	8464	17229	17229					0.03603493900254762
LYNVISLEF	9	Unmodified	_LYNVISLEF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000528380.1_1_11:66975039-66982918:+|nuORF;nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000538503.5_1_12:121882954-121987523:-|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2978515625	2	549.297507	1096.58046	0.37564	0.00020634	1.0151	0.00055761	1.3908	0.00076394	549.2978532312308	88.973	0.3977	89.005	88.903	89.301	0.032265					25	15	2	0	0	0	0.065576	1	22048	22048		39.95	20.693	1	187860			12704	4527;1027	8402	8464	17230	17230					0.03603493900254762
LYNVISLEF	9	Unmodified	_LYNVISLEF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000528380.1_1_11:66975039-66982918:+|nuORF;nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000538503.5_1_12:121882954-121987523:-|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.297507	1096.58046	0.44321	0.00024346	1.2894	0.00070828	1.7326	0.00095174	549.2974013812285	88.676	0.444	88.708	88.49	88.934	0.032257	-0.064195	0.00047295	NaN	21.537	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174420			12705	4527;1027	8402	8464							0.03603493900254762
LYNWEVAIF	9	Unmodified	_LYNWEVAIF_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000099804|ENST00000215574|CDC34	ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF	ENST00000586788.1_1_19:531880-536341:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7976684570312	2	577.797675	1153.5808	0.53904	0.00031146	0.43265	0.00024999	0.97169	0.00056144	577.7974483507126	93.68	0.49244	93.68	93.435	93.928	0					29	19	2	0	0	0	0.031665	3	23590	23590;23639;23690		49.933	17.147	1	712630			12706	1554;1134	8403	8465	17231;17232;17233	17231					0.010149136200880093
LYNWEVAIF	9	Unmodified	_LYNWEVAIF_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000099804|ENST00000215574|CDC34	ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF	ENST00000586788.1_1_19:531880-536341:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7977905273438	2	577.797675	1153.5808	0.51375	0.00029684	0.45773	0.00026448	0.97148	0.00056132	577.7973750157413	93.63	0.44581	93.668	93.467	93.913	0.037369					40	17	3	0	0	0	0.01943	2	23487	23437;23487		58.679	18.729	1	751480			12707	1554;1134	8403	8465	17234;17235	17235					0.010149136200880093
LYNWEVAIF	9	Unmodified	_LYNWEVAIF_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000099804|ENST00000215574|CDC34	ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF	ENST00000586788.1_1_19:531880-536341:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.8009033203125	2	577.797675	1153.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.946	1	93.984	93.484	94.484	0.038086								0	0	0	0.21325	1	23546	23546		16.149	4.5088	1				12708	1554;1134	8403	8465	17236	17236					0.010149136200880093
LYNWLEVEF	9	Unmodified	_LYNWLEVEF_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;EIF3A|p.D389Y|1|0.15|ENSG00000107581|chr10:119061286-119061286|C/A|missense_variant	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8013916015625	2	606.800414	1211.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.142	1	96.142	95.642	96.642	0								0	0	0	0.26517	1	24373	24373		6.2058	0.9089	1				12709	1558	8404	8466	17237	17237					-0.011054075881020253
LYPAFFGYYF	10	Unmodified	_LYPAFFGYYF_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150936938-150939392:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3076171875	2	644.307875	1286.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.9	1	101.95	101.45	102.45	0.042656								0	0	0	0.32946	1	25965	25965		12.532	7.2347	1				12710	3157	8405	8467	17238	17238					-0.030639157200994305
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2769470214844	2	502.276575	1002.5386	0.13296	6.678E-05	1.5407	0.00077388	1.6737	0.00084066	502.2770632295221	71.786	1.6399	71.786	71.269	72.909	0					128	57	4	0	0	0	0.006264	3	16946	16946;16999;17046		78.728	23.954	1	1759500			12711	3738	8406	8468	17239;17240;17241	17239					0.03742938211712499
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2769470214844	2	502.276575	1002.5386	0.16839	8.4579E-05	1.4774	0.00074207	1.6458	0.00082665	502.27702402374587	71.758	1.5116	71.814	71.235	72.746	0.055939					145	53	4	0	0	0	0.0074933	2	16766	16766;16810		74.929	22.661	1	2110300			12712	3738	8406	8468	17242;17243	17242					0.03742938211712499
LYPEIFEKF	9	Unmodified	_LYPEIFEKF_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3136596679688	2	593.313158	1184.61176	-0.017177	-1.0192E-05	0.46047	0.0002732	0.44329	0.00026301	593.3136446477299	72.185	0.56306	72.185	72.019	72.582	0					41	18	3	0	0	0	0.10543	1	17079	17079		31.268	8.5321	1	380110			12713	2088	8407	8469	17244	17244					0.026840669343073387
LYPEVFEKF	9	Unmodified	_LYPEVFEKF_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3058471679688	2	586.305332	1170.59611	1.1068	0.00064895	-0.65039	-0.00038133	0.45646	0.00026763	586.3046126030117	67.301	0.53379	67.366	67.074	67.608	0.065071					44	18	3	0	0	0	0.091044	1	15429	15429		34.402	9.0024	1	475540			12714	3637	8408	8470	17245	17245					0.01763780417286398
LYPFLGIRF	9	Unmodified	_LYPFLGIRF_					0	0	0		ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3265991210938	2	563.326402	1124.63825	0.52426	0.00029533	-0.16301	-9.1826E-05	0.36126	0.0002035	563.3262327092397	82.529	0.75758	82.529	82.2	82.957	0					51	26	3	0	0	0	0.05573	2	20245	20193;20245		42.095	13.608	1	326030			12715	2868	8409	8471	17246;17247	17247					0.0809180061630741
LYPFLGIRF	9	Unmodified	_LYPFLGIRF_					0	0	0		ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3265380859375	2	563.326402	1124.63825	0.34281	0.00019311	0.11052	6.2258E-05	0.45332	0.00025537	563.3262212936628	82.463	0.77084	82.485	82.246	83.017	0.021744					52	27	4	0	0	0	0.033885	1	20044	20044		48.346	19.859	1	297550			12716	2868	8409	8471	17248	17248					0.0809180061630741
LYPGSVYLL	9	Unmodified	_LYPGSVYLL_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;nc|ENSG00000204427|O95870-2|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.281982421875	2	512.789318	1023.56408	0.83191	0.00042659	0.97037	0.0004976	1.8023	0.00092419	512.790040388072	81.263	0.48885	81.263	81.056	81.545	0					35	16	3	0	0	0	0.073221	1	19842	19842		50.855	6.448	1	198230			12717	5471	8410	8472	17249	17249					0.05324412734148609
LYPGSVYLL	9	Unmodified	_LYPGSVYLL_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;nc|ENSG00000204427|O95870-2|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2618408203125	2	512.789318	1023.56408	0.54568	0.00027982	1.2757	0.00065418	1.8214	0.000934	512.7900971760732	81.251	0.47325	81.273	81.049	81.523	0.021866					43	16	3	0	0	0	0.17491	1	19649	19649		28.487	0	1	248110			12718	5471	8410	8472	17250	17250					0.05324412734148609
LYPKTLFLL	9	Unmodified	_LYPKTLFLL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.34423828125	2	554.344261	1106.67397	0.45903	0.00025446	-0.19348	-0.00010726	0.26555	0.0001472	554.3440542505431	77.126	1.1127	77.126	76.756	77.869	0					81	45	4	0	0	0	0.07372	2	18579	18579;18625		38.176	9.6887	1	1379800			12719	2942	8411	8473	17251;17252	17251					0.12489838073338433
LYPKTLFLL	9	Unmodified	_LYPKTLFLL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.3440551757812	2	554.344261	1106.67397	0.62706	0.00034761	-0.34176	-0.00018945	0.2853	0.00015815	554.343936878498	77.039	1.0672	77.074	76.729	77.796	0.034485					88	42	3	0	0	0	0.098463	3	18360	18360;18446;18503		32.786	4.2988	1	1027600			12720	2942	8411	8473	17253;17254;17255	17253					0.12489838073338433
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENST00000567110.1_1_16:56481699-56485159:-|nuORF;ENSG00000167005|ENST00000300291|NUDT21	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2908325195312	2	566.289682	1130.56481	0.61336	0.00034734	0.033472	1.8955E-05	0.64683	0.0003663	566.2900286142849	79.845	0.88918	79.845	79.424	80.313	0					93	28	4	0	0	0	5.2227000000000005E-24	7	19397	19345;19353;19397;19447;19495;19501;19549		223.06	112.15	1	9815100			12721	4195	8412	8474	17256;17257;17258;17259;17260;17261;17262	17258					0.00475207383169618
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENST00000567110.1_1_16:56481699-56485159:-|nuORF;ENSG00000167005|ENST00000300291|NUDT21	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.299072265625	2	566.289682	1130.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.506	1	80.506	80.006	81.006	0								0	0	0	0.0011439	1	19618	19618		85.642	51.24	1				12722	4195	8412	8474	17263	17263					0.00475207383169618
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENST00000567110.1_1_16:56481699-56485159:-|nuORF;ENSG00000167005|ENST00000300291|NUDT21	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2898559570312	2	566.289682	1130.56481	0.36369	0.00020595	-0.25392	-0.00014379	0.10977	6.216E-05	566.2897070632322	79.844	1.0018	79.871	79.437	80.439	0.026428					106	33	4	0	0	0	5.2227000000000005E-24	8	19213	19184;19213;19265;19316;19360;19368;19401;19408		223.06	102.61	1	7919600			12723	4195	8412	8474	17264;17265;17266;17267;17268;17269;17270;17271	17265					0.00475207383169618
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(100)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3002319335938	2	606.299527	1210.5845	0.59191	0.00035887	-0.45261	-0.00027442	0.1393	8.4455E-05	606.299541777111	74.245	0.68395	74.245	73.977	74.661	0					130	25	7	0	0	0	0.0037915	3	17713	17668;17713;17761		104.8	74.574	1	24118000			12724	1224;1250	8413	8475	17272;17273;17274	17273		71			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(120)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3004150390625	2	606.299527	1210.5845	0.74227	0.00045004	-0.49042	-0.00029734	0.25185	0.00015269	606.2996117381321	75.04	3.7262	75.04	74.635	78.361	0					393	162	6	0	0	0	0.0017019	11	17901	17895;17901;17946;17992;18038;18110;18157;18197;18237;18275;18284		117.6	79.448	1	33769000			12725	1224;1250	8413	8475	17275;17276;17277;17278;17279;17280;17281;17282;17283;17284;17285	17276		71			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(120)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.300048828125	2	606.299527	1210.5845	0.83005	0.00050326	-0.70218	-0.00042573	0.12787	7.7529E-05	606.2993812349619	74.163	0.7947	74.211	73.962	74.757	0.048538					136	28	7	0	0	0	0.0017019	4	17540	17495;17540;17584;17627		117.6	79.448	1	22724000			12726	1224;1250	8413	8475	17286;17287;17288;17289	17287		71			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(120)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.300048828125	2	606.299527	1210.5845	0.78212	0.0004742	-0.44898	-0.00027222	0.33313	0.00020198	606.2996023868874	74.941	1.2985	74.985	74.615	75.913	0.044037					206	55	6	0	0	0	0.0017019	5	17721	17721;17766;17812;17860;17970		117.6	83.496	1	32762000			12727	1224;1250	8413	8475	17290;17291;17292;17293;17294	17290		71			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(67)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2997436523438	2	606.299527	1210.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.752	1	75.796	75.296	76.296	0.044037								0	0	0	0.011584	1	18008	18008		67.344	37.119	1				12728	1224;1250	8413	8475	17295	17295		71			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(78)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2998046875	2	606.299527	1210.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.878	1	75.922	75.422	76.422	0.044037								0	0	0	0.0036488	1	18044	18044		77.984	47.76	1				12729	1224;1250	8413	8475	17296	17296		71			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(60)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3001098632812	2	606.299527	1210.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.007	1	76.046	75.546	76.546	0.03923								0	0	0	0.024655	1	18085	18085		60.39	30.165	1				12730	1224;1250	8413	8475	17297	17297		71			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(60)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3001098632812	2	606.299527	1210.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.141	1	76.181	75.681	76.681	0.03923								0	0	0	0.024655	1	18127	18127		60.39	30.165	1				12731	1224;1250	8413	8475	17298	17298		71			-0.012367398777087146
LYPQFMFHL	9	Unmodified	_LYPQFMFHL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3024291992188	2	598.30207	1194.58959	0.57758	0.00034557	-0.14896	-8.9123E-05	0.42862	0.00025645	598.3020576801603	79.552	4.4982	79.552	79.188	83.686	0					304	156	5	0	0	0	0.0037915	12	19327	19279;19327;19370;19419;19469;19485;19533;19588;19636;19737;19815;19935		104.8	64.842	1	5858400			12732	1224;1250	8413	8476	17299;17300;17301;17302;17303;17304;17305;17306;17307;17308;17309;17310	17300					7.563984922853706E-05
LYPQFMFHL	9	Unmodified	_LYPQFMFHL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.302490234375	2	598.30207	1194.58959	0.25443	0.00015223	0.12918	7.7288E-05	0.38361	0.00022951	598.3022576553354	79.537	3.9186	79.564	79.223	83.141	0.026436					281	140	5	0	0	0	0.00052627	10	19170	19121;19170;19216;19269;19328;19387;19451;19509;19563;19650		131.3	104.41	1	6283500			12733	1224;1250	8413	8476	17311;17312;17313;17314;17315;17316;17317;17318;17319;17320	17312					7.563984922853706E-05
LYPQFPWDS	9	Unmodified	_LYPQFPWDS_					0	0	0			REV__nc|ENSG00000107290|Q7Z333-3|SETX	REV__nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.8186645507812	2	576.771657	1151.52876	0.65902	0.0003801	0.52591	0.00030333	1.1849	0.00068343	576.7724146155261	65.545	0.79308	65.545	65.06	65.853	0					47	28	2	0	0	0	0.25051	1	14905	14905		7.9102	0.62092	1	107780	+		12734	8591	8414	8477	17321	17321					-0.0409424979366122
LYPQFPWDS	9	Unmodified	_LYPQFPWDS_					0	0	0			REV__nc|ENSG00000107290|Q7Z333-3|SETX	REV__nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	576.771657	1151.52876	0.49763	0.00028702	-0.86808	-0.00050069	-0.37045	-0.00021367	576.7720990535867	65.289	0.45844	65.358	65.087	65.545	0.068916	-0.093802	-0.00084008	NaN	7.9102	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96813	+		12735	8591	8414	8477							-0.0409424979366122
LYPQLFVVL	9	Unmodified	_LYPQLFVVL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3286743164062	2	546.328611	1090.64267	0.56411	0.00030819	-0.68264	-0.00037294	-0.11853	-6.4755E-05	546.3281479309313	98.35	0.10606	98.392	98.325	98.431	0.041931					7	4	2	0	0	0	0.28587	1	24896	24896		8.5933	4.264	1	68821			12736	4788	8415	8478	17322	17322					0.10097265039235026
LYPQRYEQRF	10	Unmodified	_LYPQRYEQRF_					0	0	0			REV__nc|ENSG00000122008|Q9UBT6-8|POLK	REV__nc|ENSG00000122008|Q9UBT6-8|POLK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2334289550781	3	467.242088	1398.70443	0.67278	0.00031435	-0.56873	-0.00026573	0.10406	4.862E-05	467.2416844139856	65.975	0.37032	65.975	65.853	66.223	0					20	12	2	0	0	0	0.31802	1	15154	15154		3.8763	0.55669	1	144600	+		12737	8908	8416	8479	17323	17323					0.021029647203931745
LYPQRYEQRF	10	Unmodified	_LYPQRYEQRF_					0	0	0			REV__nc|ENSG00000122008|Q9UBT6-8|POLK	REV__nc|ENSG00000122008|Q9UBT6-8|POLK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2328796386719	3	467.242088	1398.70443	0.23992	0.0001121	-0.40651	-0.00018994	-0.16659	-7.7837E-05	467.2418260415099	65.167	0.98127	65.236	64.959	65.941	0.068916					96	38	3	0	0	0	0.45479	1	14951	14951		3.8763	1.4415	1	1335700	+		12738	8908	8416	8479	17324	17324					0.021029647203931745
LYPRDLWNF	9	Unmodified	_LYPRDLWNF_					0	0	0		ENST00000565833.1_1_17:62965520-62968715:-|nuORF;ENST00000430983.5_1_17:62964482-62968772:-|nuORF	ENST00000565833.1_1_17:62965520-62968715:-|nuORF	ENST00000565833.1_1_17:62965520-62968715:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.314208984375	2	612.314023	1222.61349	0.31462	0.00019264	-1.3127	-0.00080381	-0.99813	-0.00061117	612.313191836129	74.486	0.88359	74.534	73.988	74.872	0.048538					79	31	3	0	0	0	0.13341	1	17517	17517		26.268	11.43	1	223000			12739	6489	8417	8480	17325	17325					0.011091207429444694
LYPRDLWNF	9	Unmodified	_LYPRDLWNF_					0	0	0		ENST00000565833.1_1_17:62965520-62968715:-|nuORF;ENST00000430983.5_1_17:62964482-62968772:-|nuORF	ENST00000565833.1_1_17:62965520-62968715:-|nuORF	ENST00000565833.1_1_17:62965520-62968715:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	612.314023	1222.61349	0.15685	9.604E-05	-0.92685	-0.00056752	-0.77	-0.00047148	612.3134749197158	74.219	0.84826	74.219	74.006	74.854	0	-0.1579	0.00019363	NaN	26.268	74	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282630			12740	6489	8417	8480							0.011091207429444694
LYPREILIL	9	Unmodified	_LYPREILIL_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7720336914062	2	565.352617	1128.69068	0.30604	0.00017302	0.30292	0.00017126	0.60896	0.00034428	565.3526444448473	79.118	0.808	79.118	78.754	79.562	0					60	27	3	0	0	0	0.25281	1	19149	19149		6.7232	0.99131	1	211560			12741	2103	8418	8481	17326	17326					0.13148338959285866
LYPSIIQEF	9	Unmodified	_LYPSIIQEF_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.297607421875	2	555.297507	1108.58046	0.5705	0.0003168	-0.526	-0.00029209	0.044498	2.471E-05	555.29725838761	82.912	0.69725	82.912	82.674	83.371	0					63	23	4	0	0	0	0.0028522	2	20352	20352;20399		110.55	68.713	1	886280			12742	1275	8419	8482	17327;17328	17327					0.030514939002614483
LYPSIIQEF	9	Unmodified	_LYPSIIQEF_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2974853515625	2	555.297507	1108.58046	0.54109	0.00030047	-0.36475	-0.00020254	0.17634	9.7924E-05	555.2972696734445	82.918	0.70947	82.94	82.678	83.387	0.021744					56	24	3	0	0	0	0.0046221	2	20178	20178;20228		86.332	51.93	1	797940			12743	1275	8419	8482	17329;17330	17329					0.030514939002614483
LYPSTLFLL	9	Unmodified	_LYPSTLFLL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.8129272460938	2	533.812793	1065.61103	0.58632	0.00031298	-0.20494	-0.0001094	0.38138	0.00020358	533.812613902163	97.376	0.28179	97.376	97.156	97.438	0					35	11	4	0	0	0	0.004452	1	24728	24728		92.822	39.247	1	1234300			12744	1565	8420	8483	17331	17331					0.08085272285279643
LYPSTLFLL	9	Unmodified	_LYPSTLFLL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.81298828125	2	533.812793	1065.61103	0.62006	0.000331	-0.24627	-0.00013146	0.37379	0.00019954	533.8125913878416	97.485	0.75763	97.485	97.461	98.219	0					66	38	4	0	0	0	0.021119	1	24818	24818		57.471	21.427	1	787840			12745	1565	8420	8483	17332	17332					0.08085272285279643
LYPSTLFLL	9	Unmodified	_LYPSTLFLL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.81298828125	2	533.812793	1065.61103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.453	1	97.453	96.953	97.953	0								0	0	0	4.3245E-05	1	24773	24773		97.075	33.512	1				12746	1565	8420	8483	17333	17333					0.08085272285279643
LYPSTLFLL	9	Unmodified	_LYPSTLFLL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8129272460938	2	533.812793	1065.61103	0.76248	0.00040702	-0.4161	-0.00022212	0.34638	0.0001849	533.8125236804642	97.407	0.70487	97.448	97.166	97.871	0.040855					100	35	4	0	0	0	0.00052627	4	24600	24556;24600;24643;24684		131.3	56.875	1	1490300			12747	1565	8420	8483	17334;17335;17336;17337	17335					0.08085272285279643
LYPVGGVEAI	10	Unmodified	_LYPVGGVEAI_					0	0	0			REV__nc|nan|Q9H0W9-3|C11orf54	REV__nc|nan|Q9H0W9-3|C11orf54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.28460693359375	2	509.2844	1016.55425	0.327	0.00016654	-0.028937	-1.4737E-05	0.29807	0.0001518	509.2842746571201	76.183	0.9579	76.183	75.937	76.895	0					119	46	3	0	0	0	0.37232	1	18431	18431		14.838	1.3304	1	3436600	+		12748	10582	8421	8484	17338	17338					0.04663224728778914
LYPVTVNMLF	10	Oxidation (M)	_LYPVTVNM(Oxidation (M))LF_		LYPVTVNM(1)LF		LYPVTVNM(60)LF	0	0	1		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8204956054688	2	606.820292	1211.62603	0.39297	0.00023846	0.41173	0.00024985	0.80471	0.00048831	606.8205578703939	86.596	1.3437	86.596	86.179	87.523	0					103	54	3	0	0	0	0.041153	3	21441	21441;21490;21536		60.074	50.691	1	1056000			12749	3283	8422	8485	17339;17340;17341	17339		212			0.028683960909575035
LYPVTVNMLF	10	Oxidation (M)	_LYPVTVNM(Oxidation (M))LF_		LYPVTVNM(1)LF		LYPVTVNM(42)LF	0	0	1		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8211669921875	2	606.820292	1211.62603	1.031	0.00062565	-0.48981	-0.00029723	0.54122	0.00032842	606.8201612456807	85.022	0.58647	85.046	84.83	85.416	0.023132					54	23	3	0	0	0	0.12944	1	20845	20845		41.84	32.457	1	375960			12750	3283	8422	8485	17342	17342		212			0.028683960909575035
LYPVTVNMLF	10	Oxidation (M)	_LYPVTVNM(Oxidation (M))LF_		LYPVTVNM(1)LF		LYPVTVNM(59)LF	0	0	1		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8204956054688	2	606.820292	1211.62603	0.65316	0.00039635	0.13728	8.3304E-05	0.79044	0.00047965	606.8203367415753	86.562	1.1369	86.59	86.119	87.256	0.027573					105	48	3	0	0	0	0.043719	4	21275	21232;21275;21319;21369		59.368	44.787	1	840270			12751	3283	8422	8485	17343;17344;17345;17346	17344		212			0.028683960909575035
LYPWNLYGW	9	Unmodified	_LYPWNLYGW_					0	0	0		ENST00000256646.6_1_1:120502049-120502082:-|nuORF	ENST00000256646.6_1_1:120502049-120502082:-|nuORF	ENST00000256646.6_1_1:120502049-120502082:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3004760742188	2	606.297842	1210.58113	0.76838	0.00046586	1.926	0.0011677	2.6944	0.0016336	606.2994880432661	79.199	1.6297	79.199	78.568	80.197	0					145	56	4	0	0	0	0.28587	1	19517	19517		8.5933	1.304	1	298050			12752	5849	8423	8486	17347	17347					-0.015736666600560056
LYPYLNEKL	9	Unmodified	_LYPYLNEKL_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.818115234375	2	576.818607	1151.62266	0.60369	0.00034822	-0.52696	-0.00030396	0.076738	4.4264E-05	576.818179155551	64.937	0.82961	64.937	64.719	65.549	0					64	30	3	0	0	0	0.029291	2	14855	14855;14905		51.63	11.672	1	537110	+		12753	9247	8424	8487	17348;17349	17348					0.05291469308599517
LYPYLNEKL	9	Unmodified	_LYPYLNEKL_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8181762695312	2	576.818607	1151.62266	0.48389	0.00027912	-0.42427	-0.00024472	0.059626	3.4394E-05	576.8181743999088	64.859	0.7973	64.928	64.748	65.545	0.068916					64	30	3	0	0	0	0.029291	2	14688	14688;14736		51.63	11.672	1	491160	+		12754	9247	8424	8487	17350;17351	17350					0.05291469308599517
LYPYLNEKL	9	Unmodified	_LYPYLNEKL_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	576.818607	1151.62266	0.60369	0.00034822	-0.52696	-0.00030396	0.076738	4.4264E-05	576.818179155551	64.937	0.82961	64.937	64.719	65.549	0	0.00464	-4.4765E-05	NaN	51.63	64	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	537110	+		12755	9247	8424	8487							0.05291469308599517
LYPYLNEKL	9	Unmodified	_LYPYLNEKL_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	576.818607	1151.62266	0.48389	0.00027912	-0.42427	-0.00024472	0.059626	3.4394E-05	576.8181743999088	64.859	0.7973	64.928	64.748	65.545	0.068916	-0.00464	7.3701E-05	NaN	51.63	64	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491160	+		12756	9247	8424	8487							0.05291469308599517
LYQCRREEHQ	10	Unmodified	_LYQCRREEHQ_					0	0	0			REV__ENSG00000103148|ENST00000611875|NPRL3	REV__ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.55096435546875	3	454.550815	1360.63062	0.87997	0.00039999	-1.0578	-0.00048081	-0.17779	-8.0817E-05	454.5505099690304	80.032	0.80515	80.032	79.765	80.571	0					53	25	4	0	0	0	0.40338	1	19509	19509		11.518	1.2026	1	497210	+		12757	8470	8425	8488	17352	17352					-0.035273267135607966
LYQCRREEHQ	10	Unmodified	_LYQCRREEHQ_					0	0	0			REV__ENSG00000103148|ENST00000611875|NPRL3	REV__ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.5506896972656	3	454.550815	1360.63062	0.40726	0.00018512	-0.62158	-0.00028254	-0.21432	-9.7419E-05	454.55061576466926	79.989	0.68609	80.015	79.823	80.509	0.026428					55	24	4	0	0	0	0.40338	1	19327	19327		11.518	1.7536	1	499430	+		12758	8470	8425	8488	17353	17353					-0.035273267135607966
LYQDGVFKF	9	Unmodified	_LYQDGVFKF_					0	0	0		ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF;ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP	ENST00000514047.1_1_5:24170479-24171004:+|nuORF	ENST00000514047.1_1_5:24170479-24171004:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7901611328125	2	558.78985	1115.56515	0.60537	0.00033828	-0.6414	-0.00035841	-0.036022	-2.0129E-05	558.7892879028271	63.883	0.80272	63.954	63.706	64.508	0.071014					56	27	4	0	0	0	0.12214	1	14497	14497		27.629	3.6082	1	434200			12759	4192	8426	8489	17354	17354					0.011986271030536955
LYQDKFPFF	9	Unmodified	_LYQDKFPFF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8055419921875	2	602.8055	1203.59645	0.59608	0.00035932	-0.57278	-0.00034528	0.023303	1.4047E-05	602.8048840466554	75.257	0.56886	75.257	75.058	75.627	0					71	21	5	0	0	0	0.0042616	2	18055	18009;18055		100.09	71.604	1	2118300			12760	3192	8427	8490	17355;17356	17356					0.002792001371290098
LYQDKFPFF	9	Unmodified	_LYQDKFPFF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8045043945312	2	602.8055	1203.59645	0.57248	0.0003451	-0.40301	-0.00024293	0.16948	0.00010216	602.8049711282777	75.277	0.53409	75.321	75.085	75.619	0.044037					64	19	4	0	0	0	0.0043591	2	17826	17826;17877		96.367	72.346	1	1918900			12761	3192	8427	8490	17357;17358	17357					0.002792001371290098
LYQEILAQL	9	Unmodified	_LYQEILAQL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7496337890625	2	545.810782	1089.60701	0.78477	0.00042834	-1.9109	-0.001043	-1.1261	-0.00061463	545.8095865232199	81.762	0.29099	81.762	81.545	81.836	0					17	9	2	0	0	0	0.16724	1	19976	19976		33.445	0	1	202970			12762	3095	8428	8491	17359	17359					0.0657918279155183
LYQETLNYAP	10	Unmodified	_LYQETLNYAP_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-3|CES5A	REV__nc|ENSG00000159398|Q6NT32-3|CES5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8349609375	2	606.300778	1210.587	0.70079	0.00042489	-2.7157	-0.0016465	-2.0149	-0.0012216	606.2990462412153	83.664	1.1048	83.686	83.137	84.241	0.021744					58	39	2	0	0	0	0.31712	1	20527	20527		6.7232	1.4925	1	69439	+		12763	9826	8429	8492	17360	17360					-0.009866129390275091
LYQEVMKHAD	10	Unmodified	_LYQEVMKHAD_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1;ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.29931640625	2	617.300255	1232.58596	0.067649	4.176E-05	-1.1507	-0.00071034	-1.0831	-0.00066858	617.2993838087618	92.632	0.49146	92.632	92.405	92.897	0					32	18	2	0	0	0	0.30478	1	23318	23318		21.59	3.4438	1	165990			12764	699;6735	8430	8493	17361	17361					-0.021031505795917838
LYQEVMKHAD	10	Unmodified	_LYQEVMKHAD_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1;ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.2994384765625	2	617.300255	1232.58596	0.11548	7.1287E-05	-0.85317	-0.00052666	-0.73769	-0.00045537	617.2998020685947	92.571	0.40684	92.608	92.429	92.836	0.036522					31	14	3	0	0	0	0.31689	1	23161	23161		8.1555	1.4324	1	165880			12765	699;6735	8430	8493	17362	17362					-0.021031505795917838
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.784423828125	2	573.784567	1145.55458	0.21469	0.00012319	-0.54797	-0.00031442	-0.33328	-0.00019123	573.784268032058	87.196	0.9791	87.196	86.969	87.948	0					141	37	6	0	0	0	0.0037915	1	21673	21673		104.8	76.312	1	6449700			12766	4760	8431	8494	17363	17363					-0.012373555513931933
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7546997070312	2	573.784567	1145.55458	0.38248	0.00021946	-0.8528	-0.00048933	-0.47032	-0.00026986	573.783976774923	88.54	0.39075	88.54	88.374	88.764	0					23	16	2	0	0	0	0.2298	1	22021	22021		16.942	8.349	1	50055			12767	4760	8431	8494	17364	17364					-0.012373555513931933
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.78466796875	2	573.784567	1145.55458	0.16709	9.5873E-05	-0.36571	-0.00020984	-0.19862	-0.00011397	573.784395857777	87.151	0.88324	87.178	86.965	87.849	0.027573					127	35	5	0	0	0	0.0025191	2	21462	21462;21503		112.59	86.252	1	7135900			12768	4760	8431	8494	17365;17366	17365					-0.012373555513931933
LYQFYKYWCRR	11	Unmodified	_LYQFYKYWCRR_					0	0	0			REV__nc|ENSG00000215296|A8MYB1|TMCO5B	REV__nc|ENSG00000215296|A8MYB1|TMCO5B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.266845703125	3	542.606373	1624.79729	0.57663	0.00031288	-0.87339	-0.00047391	-0.29676	-0.00016102	542.6060520262415	64.515	0.75941	64.515	64.328	65.088	0					40	27	2	0	0	0	0.31101	1	14797	14797		0.094841	0.094841	1	262070	+		12769	12889	8432	8495	17367	17367					0.009881461821350968
LYQGDIWF	8	Unmodified	_LYQGDIWF_					0	0	0			REV__nc|ENSG00000010671|Q06187-2|BTK	REV__nc|ENSG00000010671|Q06187-2|BTK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2536010742188	2	521.255643	1040.49673	0.099543	5.1887E-05	-2.2036	-0.0011486	-2.104	-0.0010967	521.2543608414568	46.469	0.54679	46.469	45.981	46.528	0					35	19	2	0	0	0	0.35759	1	9219	9219		13.508	0	1	222120	+		12770	7972	8433	8496	17368	17368					-0.021896174768244236
LYQHAVEYF	9	Unmodified	_LYQHAVEYF_					0	0	0		ENSG00000132612|ENST00000254950|VPS4A	ENSG00000132612|ENST00000254950|VPS4A	ENSG00000132612|ENST00000254950|VPS4A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2850952148438	2	585.284931	1168.55531	0.39788	0.00023287	0.20406	0.00011943	0.60194	0.0003523	585.2849562392913	52.415	0.39948	52.415	52.246	52.645	0					33	13	3	0	0	0	0.16944	1	11060	11060		30.637	3.7529	1	168350			12771	2583	8434	8497	17369	17369					-0.022225609023507786
LYQHAVEYF	9	Unmodified	_LYQHAVEYF_					0	0	0		ENSG00000132612|ENST00000254950|VPS4A	ENSG00000132612|ENST00000254950|VPS4A	ENSG00000132612|ENST00000254950|VPS4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.285400390625	2	585.284931	1168.55531	0.6436	0.00037669	-0.1216	-7.1171E-05	0.522	0.00030552	585.2847307398615	52.345	0.41787	52.412	52.247	52.665	0.067173					36	16	3	0	0	0	0.16392	1	10880	10880		22.736	2.2827	1	171480			12772	2583	8434	8497	17370	17370					-0.022225609023507786
LYQHEINLF	9	Unmodified	_LYQHEINLF_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8062744140625	2	588.806031	1175.59751	0.50249	0.00029587	0.29149	0.00017163	0.79397	0.0004675	588.8061920190266	61.179	0.44535	61.179	61.002	61.447	0					51	15	4	0	0	0	0.02293	1	13702	13702		56.177	21.775	1	677530			12773	1923	8435	8498	17371	17371					0.016734145060127048
LYQHEINLF	9	Unmodified	_LYQHEINLF_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8063354492188	2	588.806031	1175.59751	0.48692	0.0002867	0.095171	5.6037E-05	0.58209	0.00034274	588.8061141684345	61.077	0.61985	61.151	60.879	61.499	0.073421					60	22	4	0	0	0	0.0046402	3	13535	13535;13581;13635		85.642	24.284	1	713520			12774	1923	8435	8498	17372;17373;17374	17372					0.016734145060127048
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3502197265625	2	597.350074	1192.6856	0.38275	0.00022864	0.1981	0.00011833	0.58085	0.00034697	597.3501134469018	96.897	0.88638	96.897	96.552	97.438	0					133	41	4	0	0	0	1.7145E-05	6	24575	24533;24575;24618;24656;24699;24745		131.27	89.428	1	4303500			12775	4386	8436	8499	17375;17376;17377;17378;17379;17380	17376					0.09696035096658306
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8516235351562	2	597.350074	1192.6856	0.49544	0.00029595	-0.53237	-0.00031801	-0.03693	-2.206E-05	597.3495114699493	97.591	0.22304	97.591	97.461	97.684	0					18	9	2	0	0	0	0.42335	1	24808	24808		9.3831	6.1018	1	81524			12776	4386	8436	8499	17381	17381					0.09696035096658306
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3501586914062	2	597.350074	1192.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.779	1	97.779	97.279	98.279	0								0	0	0	0.25847	1	24870	24870		22.736	13.353	1				12777	4386	8436	8499	17382	17382					0.09696035096658306
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3502807617188	2	597.350074	1192.6856	0.3249	0.00019408	0.21003	0.00012546	0.53493	0.00031954	597.3501365821468	96.751	0.94668	96.79	96.541	97.488	0.039772					122	45	5	0	0	0	0.00025032	6	24404	24366;24404;24446;24489;24537;24585		99.799	65.397	1	5490800			12778	4386	8436	8499	17383;17384;17385;17386;17387;17388	17384					0.09696035096658306
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3496704101562	2	597.350074	1192.6856	0.40901	0.00024432	0.17639	0.00010537	0.58539	0.00034969	597.3497880445902	97.839	0.22023	97.88	97.737	97.957	0.040855					16	10	2	0	0	0	0.34138	1	24721	24721		18.146	9.4009	1	48894			12779	4386	8436	8499	17389	17389					0.09696035096658306
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.35009765625	2	597.350074	1192.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.553	1	97.594	97.094	98.094	0.040855								0	0	0	0.21884	1	24647	24647		27.629	14.586	1				12780	4386	8436	8499	17390	17390					0.09696035096658306
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2974243164062	2	597.350074	1192.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.273	1	98.315	97.815	98.815	0.041931								0	0	0	0.33215	1	24868	24868		9.3831	6.1018	1				12781	4386	8436	8499	17391	17391					0.09696035096658306
LYQKDFLRI	9	Unmodified	_LYQKDFLRI_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.344970703125	2	598.345323	1194.67609	0.16794	0.00010048	0.2827	0.00016915	0.45063	0.00026963	598.3454991810734	52.102	0.33136	52.17	52.027	52.358	0.067173					22	12	2	0	0	0	0.095436	1	10829	10829		33.445	11.908	1	100650			12782	2992	8437	8500	17392	17392					0.08654266811140587
LYQKDFLRI	9	Unmodified	_LYQKDFLRI_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	598.345323	1194.67609	0.14463	8.6539E-05	0.050989	3.0509E-05	0.19562	0.00011705	598.3451520097029	52.158	0.40817	52.158	52.015	52.424	0	-0.0055956	-0.00016947	NaN	33.445	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126830			12783	2992	8437	8500							0.08654266811140587
LYQKEMWIE	9	Unmodified	_LYQKEMWIE_					0	0	0			REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.323486328125	2	620.307549	1238.60055	-0.062175	-3.8568E-05	1.3679	0.0008485	1.3057	0.00080993	620.3083146007086	94.792	0.61207	94.792	94.545	95.157	0					61	24	4	0	0	0	0.32375	1	24051	24051		3.5965	0	1	267890	+		12784	9270	8438	8501	17393	17393					-0.009210784314518605
LYQKRPHF	8	Unmodified	_LYQKRPHF_					0	0	0			REV__ENST00000572259.1_1_17:578096-579572:-|nuORF	REV__ENST00000572259.1_1_17:578096-579572:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.8046875	2	544.803626	1087.5927	0.58952	0.00032117	0.027346	1.4898E-05	0.61687	0.00033607	544.8035901500907	97.407	0.52884	97.448	97.208	97.737	0.040855					61	26	3	0	0	0	0.51887	1	24665	24665		10.183	10.183	1	403780	+		12785	12524	8439	8502	17394	17394					0.0524057515392542
LYQLHSTCF	9	Carbamidomethyl (C)	_LYQLHSTC(Carbamidomethyl (C))F_	LYQLHSTC(1)F		LYQLHSTC(44)F		0	1	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|13|2|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|13|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7755737304688	2	584.776416	1167.53828	0.42659	0.00024946	-0.76516	-0.00044745	-0.33857	-0.00019799	584.7760613802984	87.191	0.62485	87.191	87.008	87.633	0					65	24	4	0	0	0	0.047633	1	21633	21633		43.858	11.553	1	973710	+		12786	12651	8440	8503	17395	17395	21				-0.0387880477978797
LYQLHSTCF	9	Carbamidomethyl (C)	_LYQLHSTC(Carbamidomethyl (C))F_	LYQLHSTC(1)F		LYQLHSTC(52)F		0	1	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|13|2|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|13|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7765502929688	2	584.776416	1167.53828	0.51568	0.00030156	-0.73984	-0.00043264	-0.22416	-0.00013108	584.7759739715323	87.149	0.54977	87.177	86.982	87.532	0.027573					59	22	4	0	0	0	0.028398	1	21466	21466		52.268	12.311	1	947740	+		12787	12651	8440	8503	17396	17396	21				-0.0387880477978797
LYQPAPQLF	9	Unmodified	_LYQPAPQLF_					0	0	0		ENST00000472524.1_1_11:64122844-64124563:+|nuORF;ENST00000479965.5_1_11:64120415-64123189:+|nuORF	ENST00000472524.1_1_11:64122844-64124563:+|nuORF	ENST00000472524.1_1_11:64122844-64124563:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.828857421875	2	538.792392	1075.57023	0.37888	0.00020414	-0.1016	-5.4739E-05	0.27728	0.0001494	538.7923266711646	79.052	0.55245	79.052	78.846	79.398	0					44	18	3	0	0	0	0.24263	1	19121	19121		12.532	12.532	1	304040			12788	6683	8441	8504	17397	17397					0.03546930965649153
LYQPFKQYF	9	Unmodified	_LYQPFKQYF_					0	0	0			REV__CON__P02663	REV__CON__P02663	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.2669067382812	2	617.318774	1232.623	-0.096898	-5.9817E-05	-0.28637	-0.00017678	-0.38327	-0.0002366	617.3185564301506	75.507	0.53853	75.507	75.174	75.713	0					58	21	4	0	0	0	0.31136	1	18106	18106		5.2307	0.47466	1	930940	+	+	12789	7835	8442	8505	17398	17398					0.01598889028468875
LYQPGINRQ	9	Unmodified	_LYQPGINRQ_					0	0	0			REV__ENST00000564138.5_1_16:81962191-81962224:+|nuORF	REV__ENST00000564138.5_1_16:81962191-81962224:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.3126831054688	2	544.795998	1087.57744	0.58787	0.00032027	-0.81749	-0.00044536	-0.22962	-0.00012509	544.7960858885699	98.201	0.06356	98.201	98.155	98.219	0					4	2	2	0	0	0	0.25644	1	24997	24997		3.9444	0.66309	1	24425	+		12790	12493	8443	8506	17399	17399					0.03715663566094918
LYQQCRALY	9	Unmodified	_LYQQCRALY_					0	0	0			REV__ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant	REV__ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2914428710938	2	579.292233	1156.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.795	1	88.828	88.328	89.328	0.032257								0	0	0	0.28409	1	21977	21977		2.3027	0	1		+		12791	8163	8444	8507	17400	17400					-0.002108120258526469
LYQQISYAVS	10	Unmodified	_LYQQISYAVS_					0	0	0		nc|ENSG00000137707|Q9NY30-2|BTG4;nc|ENSG00000137707|Q9NY30|BTG4;ENSG00000137707|ENST00000692032|BTG4	nc|ENSG00000137707|Q9NY30-2|BTG4	nc|ENSG00000137707|Q9NY30-2|BTG4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3048095703125	2	586.303321	1170.59209	0.76539	0.00044875	3.0054	0.0017621	3.7708	0.0022108	586.3043720118453	67.344	0.65502	67.344	66.955	67.61	0					52	24	3	0	0	0	0.31532	1	15572	15572		13.042	1.4022	1	296410			12792	2863	8445	8508	17401	17401					0.013616909235679486
LYQQQYQW	8	Unmodified	_LYQQQYQW_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3008422851562	2	578.774731	1155.53491	0.016896	9.7791E-06	2.7605	0.0015977	2.7774	0.0016075	579.2771278730057	45.922	0.42508	45.922	45.782	46.207	0					20	14	2	0	0	0	0.3576	1	9168	9168		5.7604	1.0044	1	44582			12793	4823	8446	8509	17402	17402					-0.036637315621419475
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.3197631835938	2	588.31964	1174.62473	0.26903	0.00015827	-0.12734	-7.4918E-05	0.14168	8.3355E-05	588.319474214145	39.177	0.51194	39.177	39.03	39.542	0					28	19	2	0	0	0	0.26684	1	7042	7042		10.824	2.0785	1	70588			12794	5692	8447	8510	17403	17403					0.0443994283707525
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.319580078125	2	588.31964	1174.62473	0.47661	0.0002804	-0.20133	-0.00011845	0.27528	0.00016195	588.3194381001127	39.118	0.36871	39.205	38.994	39.363	0.08688					31	14	3	0	0	0	0.26684	1	6878	6878		10.824	4.1008	1	71150			12795	5692	8447	8510	17404	17404					0.0443994283707525
LYQVLAQAMC	10	Unmodified	_LYQVLAQAMC_					0	0	0			REV__nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	REV__nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.293701171875	2	570.28302	1138.55149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.379	1	31.379	30.879	31.879	0								0	0	0	0.33738	1	4707	4707		3.2813	1.2216	1		+		12796	12777	8448	8511	17405	17405					-0.012246899920683063
LYQWTNLF	8	Unmodified	_LYQWTNLF_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-4|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7909545898438	2	542.776742	1083.53893	0.51644	0.00028031	-1.7936	-0.0009735	-1.2771	-0.00069319	542.7735930662556	82.637	0.16263	82.637	82.534	82.697	0					7	5	2	0	0	0	0.33972	1	20265	20265		26.341	11.503	1	56215			12797	6877	8449	8512	17406	17406					0.0005035793153638224
LYQYPCFY	8	Unmodified	_LYQYPCFY_					0	0	0		SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.760498046875	2	548.744053	1095.47355	0.03237	1.7763E-05	-1.2934	-0.00070972	-1.261	-0.00069196	548.7435278656225	33.738	0.48166	33.738	33.548	34.029	0					36	17	3	0	0	0	0.53257	1	5400	5400		6.3541	1.5981	1	55720			12798	13378	8450	8513	17407	17407					-0.07036379585792929
LYQYPCFY	8	Unmodified	_LYQYPCFY_					0	0	0		SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	548.744053	1095.47355	0.03237	1.7763E-05	-1.2934	-0.00070972	-1.261	-0.00069196	548.7435278656225	33.738	0.48166	33.738	33.548	34.029	0	-0.0026754	-0.00022473	NaN	6.3541	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55720			12799	13378	8450	8513							-0.07036379585792929
LYQYPCFY	8	Unmodified	_LYQYPCFY_					0	0	0		SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	548.744053	1095.47355	0.097359	5.3425E-05	-1.0182	-0.00055871	-0.92081	-0.00050529	548.7435064453556	33.669	0.51476	33.744	33.546	34.061	0.074322	0.0026754	7.7291E-05	NaN	6.3541	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48645			12800	13378	8450	8513							-0.07036379585792929
LYQYSLQF	8	Unmodified	_LYQYSLQF_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2675170898438	2	531.26875	1060.52295	0.8432	0.00044796	-2.1588	-0.0011469	-1.3156	-0.00069891	531.2674200637875	80.181	0.46677	80.181	79.989	80.456	0					30	15	2	0	0	0	0.20402	1	19508	19508		42.095	2.1449	1	666860			12801	5272	8451	8514	17408	17408					-0.004893483053592718
LYQYSLQF	8	Unmodified	_LYQYSLQF_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2671508789062	2	531.26875	1060.52295	0.6821	0.00036238	-0.84445	-0.00044863	-0.16235	-8.625E-05	531.2674771469857	80.15	0.91221	80.174	79.796	80.708	0.023605					68	32	3	0	0	0	0.20402	2	19347	19347;19396		42.095	3.0875	1	299790			12802	5272	8451	8514	17409;17410	17409					-0.004893483053592718
LYRAYVLLW	9	Unmodified	_LYRAYVLLW_					0	0	0			REV__nc|ENSG00000100084|P54198-2|HIRA	REV__nc|ENSG00000100084|P54198-2|HIRA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3025512695312	2	598.844959	1195.67537	0.48741	0.00029189	0.68094	0.00040778	1.1684	0.00069966	598.8447657610457	81.167	0.3996	81.191	81.023	81.423	0.023605					16	13	2	0	0	0	0.2446	1	19706	19706		11.64	6.8843	1	88001	+		12803	8366	8452	8515	17411	17411					0.08535472162088809
LYRCMVTA	8	Unmodified	_LYRCMVTA_					0	0	0		ENST00000496699.1_1_1:117509714-117517097:+|nuORF;ENSG00000134247|ENST00000393203|PTGFRN	ENST00000496699.1_1_1:117509714-117517097:+|nuORF	ENST00000496699.1_1_1:117509714-117517097:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7374267578125	2	478.738248	955.461943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.593	1	25.593	25.093	26.093	0								0	0	0	0.38822	1	3018	3018		7.9102	0	1				12804	2651	8453	8516	17412	17412					-0.01756899880774654
LYRCMVTA	8	Unmodified	_LYRCMVTA_					0	0	0		ENST00000496699.1_1_1:117509714-117517097:+|nuORF;ENSG00000134247|ENST00000393203|PTGFRN	ENST00000496699.1_1_1:117509714-117517097:+|nuORF	ENST00000496699.1_1_1:117509714-117517097:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7376708984375	2	478.738248	955.461943	-0.32869	-0.00015736	-0.77071	-0.00036897	-1.0994	-0.00052633	478.7378300560071	25.441	0.36329	25.537	25.412	25.775	0.096075					63	29	3	0	0	0	0.53026	1	2852	2852		7.9102	0	1	78736			12805	2651	8453	8516	17413	17413					-0.01756899880774654
LYREAWRRL	9	Unmodified	_LYREAWRRL_					0	0	0			REV__ENST00000412277.6_1_22:31518982-31520873:+|nuORF	REV__ENST00000412277.6_1_22:31518982-31520873:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5749206542969	3	421.575401	1261.70437	-0.18212	-7.6778E-05	-0.37997	-0.00016019	-0.56209	-0.00023696	421.57520502576835	41.071	1.9481	41.071	39.661	41.609	0					97	69	2	0	0	0	0.33208	1	7594	7594		2.4985	0	1	42526	+		12806	11779	8454	8517	17414	17414					0.08399009511072109
LYREELAQF	9	Unmodified	_LYREELAQF_					0	0	0		ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3139038085938	2	584.803488	1167.59242	0.83258	0.0004869	1.2838	0.00075075	2.1163	0.0012376	585.305830853536	79.809	0.24438	79.809	79.652	79.897	0					9	8	2	0	0	0	0.25281	1	19431	19431		6.7232	0	1	49612			12807	2378	8455	8518	17415	17415					0.01533110643413238
LYRELYHKL	9	Unmodified	_LYRELYHKL_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.2483825683594	3	412.236274	1233.68699	0.7896	0.0003255	1.4733	0.00060734	2.2629	0.00093284	412.23687769905183	54.652	0.5597	54.652	54.48	55.04	0					66	24	4	0	0	0	0.27266	1	11840	11840		10.151	0	1	422900			12808	4905	8456	8519	17416	17416					0.0794966918542741
LYRELYHKL	9	Unmodified	_LYRELYHKL_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	412.236274	1233.68699	0.7896	0.0003255	1.4733	0.00060734	2.2629	0.00093284	412.23687769905183	54.652	0.5597	54.652	54.48	55.04	0	-0.018195	8.3521E-05	NaN	10.151	66	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422900			12809	4905	8456	8519							0.0794966918542741
LYRGADEPLF	10	Unmodified	_LYRGADEPLF_					0	0	0			REV__ENST00000426612.5_1_5:176516603-176517831:+|nuORF	REV__ENST00000426612.5_1_5:176516603-176517831:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8045654296875	2	590.803488	1179.59242	0.60656	0.00035836	-0.1706	-0.00010079	0.43596	0.00025757	590.8039236054478	96.941	0.17152	96.981	96.939	97.111	0.039772					20	8	4	0	0	0	0.35104	1	24468	24468		17.113	0	1	169660	+		12810	9861	8457	8520	17417	17417					0.009811106434199246
LYRGEASD	8	Unmodified	_LYRGEASD_					0	0	0		ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.71649169921875	2	455.716882	909.41921	0.2345	0.00010686	-0.20724	-9.4441E-05	0.02726	1.2423E-05	455.7167153105324	37.885	0.87714	37.97	37.684	38.561	0.08448					64	31	3	0	0	0	0.53817	1	6688	6688		2.5775	0	1	310400			12811	6909	8458	8521	17418	17418					-0.039122554130017306
LYRGSTSTF	9	Unmodified	_LYRGSTSTF_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2767944335938	2	516.261456	1030.50836	0.19216	9.9205E-05	-0.9809	-0.0005064	-0.78874	-0.00040719	516.2606796343925	35.576	0.45035	35.655	35.513	35.963	0.078827					27	16	2	0	0	0	0.19307	1	5849	5849		19.362	5.4559	1	90653			12812	1886	8459	8522	17419	17419					-0.005674204534898308
LYRGYIVAIIS	11	Unmodified	_LYRGYIVAIIS_					0	0	0			REV__ENSG00000135776|ENST00000344517|ABCB10	REV__ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3765258789062	2	634.374081	1266.73361	0.2496	0.00015834	2.2738	0.0014424	2.5234	0.0016008	634.3762214165522	108.18	0.19358	108.21	108.04	108.24	0.022224					30	28	2	0	0	0	0.40578	1	27697	27697		2.9952	0	1	3040700	+		12813	9218	8460	8523	17420	17420					0.11091109016706469
LYRIGCMLL	9	Unmodified	_LYRIGCMLL_					0	0	0		ENST00000523675.1_1_8:141900602-141931054:-|nuORF	ENST00000523675.1_1_8:141900602-141931054:-|nuORF	ENST00000523675.1_1_8:141900602-141931054:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7406005859375	2	541.298473	1080.58239	0.22251	0.00012045	2.9697	0.0016075	3.1922	0.0017279	541.2995124776819	56.769	0.49413	56.769	56.6	57.095	0					21	18	2	0	0	0	0.2298	1	12389	12389		16.942	2.104	1	62437			12814	6976	8461	8524	17421	17421					0.04532508112833966
LYRLEFGLF	9	Unmodified	_LYRLEFGLF_					0	0	0		ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3215942382812	2	579.321317	1156.62808	0.4738	0.00027448	-0.093196	-5.399E-05	0.3806	0.00022049	579.3212933926358	74.536	0.53963	74.536	74.37	74.91	0					44	19	3	0	0	0	0.12809	1	17801	17801		26.884	0	1	289170			12815	6159	8462	8525	17422	17422					0.056031928910670104
LYRLEFGLF	9	Unmodified	_LYRLEFGLF_					0	0	0		ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3211669921875	2	579.321317	1156.62808	0.53587	0.00031044	-0.33043	-0.00019143	0.20544	0.00011901	579.3211851125006	74.515	0.52941	74.563	74.316	74.846	0.048546					31	18	2	0	0	0	0.10833	1	17632	17632		30.637	2.1497	1	276580			12816	6159	8462	8525	17423	17423					0.056031928910670104
LYRLQFNEF	9	Unmodified	_LYRLQFNEF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.319580078125	2	615.319306	1228.62406	0.31692	0.000195	-0.18434	-0.00011343	0.13258	8.1577E-05	615.3191656868671	66.587	1.5649	66.587	66.046	67.61	0					152	52	5	0	0	0	5.7707E-13	1	15341	15341		187.3	98.343	1	2454800			12817	2192	8463	8526	17424	17424					0.018891033973659432
LYRLQFNEF	9	Unmodified	_LYRLQFNEF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	615.319306	1228.62406	0.26996	0.00016611	-0.055593	-3.4207E-05	0.21437	0.00013191	615.319300529594	66.527	1.5559	66.592	66.11	67.666	0.065071	0.0025872	9.4552E-05	NaN	187.3	135	50	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2505400			12818	2192	8463	8526							0.018891033973659432
LYRLVVEVF	9	Unmodified	_LYRLVVEVF_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8023681640625	2	569.336967	1136.65938	0.29354	0.00016712	0.0024085	1.3712E-06	0.29594	0.00016849	569.3368059382236	73.637	0.23908	73.69	73.591	73.831	0.052574					12	8	2	0	0	0	0.23975	1	17363	17363		14.838	5.4908	1	88184			12819	5515	8464	8527	17425	17425					0.09651765925173095
LYRNFAAEQY	10	Unmodified	_LYRNFAAEQY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.8209838867188	2	637.811845	1273.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.009	1	91.009	90.509	91.509	0								0	0	0	0.33905	1	22811	22811		1.3295	0.13619	1				12820	1356	8465	8528	17426	17426					-0.016723884706152603
LYRQYFEEI	9	Unmodified	_LYRQYFEEI_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8170776367188	2	630.816596	1259.61864	-0.16279	-0.00010269	0.55652	0.00035106	0.39373	0.00024837	630.8168211120677	58.488	0.41445	58.488	58.293	58.708	0					26	13	3	0	0	0	0.19079	1	12892	12892		20.415	11.031	1	189630			12821	2239	8466	8529	17427	17427					-0.0007862018510422786
LYRQYFEEI	9	Unmodified	_LYRQYFEEI_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.8170166015625	2	630.816596	1259.61864	0.2033	0.00012825	0.17267	0.00010892	0.37597	0.00023717	630.8168795511589	58.32	0.54142	58.39	58.322	58.863	0.070473					29	18	2	0	0	0	0.19079	1	12728	12728		26.268	17.523	1	188930			12822	2239	8466	8529	17428	17428					-0.0007862018510422786
LYRRCLRLS	9	Unmodified	_LYRRCLRLS_					0	0	0			REV__ENST00000221566.6_1_19:2767199-2767630:-|nuORF	REV__ENST00000221566.6_1_19:2767199-2767630:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.3434448242188	2	590.342592	1178.67063	0.3968	0.00023425	-1.0181	-0.00060104	-0.62132	-0.00036679	590.3421742216157	53.417	0.5719	53.417	53.188	53.76	0					38	23	2	0	0	0	0.3182	1	11383	11383		4.3292	1.334	1	90806	+		12823	11181	8467	8530	17429	17429					0.08844264747654051
LYRRHSFMS	9	Unmodified	_LYRRHSFMS_					0	0	0		nc|ENSG00000108309|Q59EK9-2|RUNDC3A;nc|ENSG00000108309|Q59EK9-3|RUNDC3A;ENSG00000108309|ENST00000426726|RUNDC3A	nc|ENSG00000108309|Q59EK9-2|RUNDC3A	nc|ENSG00000108309|Q59EK9-2|RUNDC3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8006591796875	2	598.8033	1195.59205	0.49807	0.00029825	-1.8242	-0.0010923	-1.3261	-0.0007941	598.8008590095592	70.609	0.99385	70.609	70.043	71.037	0					53	21	4	0	0	0	0.10833	1	16604	16604		30.637	6.616	1	295450			12824	1585	8468	8531	17430	17430					0.0020741244259170344
LYRVPGGL	8	Unmodified	_LYRVPGGL_					0	0	0			REV__ENST00000483404.5_1_1:234529115-234536620:-|nuORF	REV__ENST00000483404.5_1_1:234529115-234536620:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.76068115234375	2	437.760895	873.507237	0.65473	0.00028662	-0.62379	-0.00027307	0.030944	1.3546E-05	437.7605264924728	63.836	1.2236	63.836	63.592	64.816	0					100	43	4	0	0	0	0.42348	1	14672	14672		23.148	5.0134	1	845390	+		12825	12111	8469	8532	17431	17431					0.0654240996829003
LYRVPGGL	8	Unmodified	_LYRVPGGL_					0	0	0			REV__ENST00000483404.5_1_1:234529115-234536620:-|nuORF	REV__ENST00000483404.5_1_1:234529115-234536620:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.76092529296875	2	437.760895	873.507237	0.30174	0.00013209	-0.1615	-7.0698E-05	0.14024	6.1391E-05	437.7607138654721	63.707	1.187	63.778	63.563	64.75	0.071018					82	41	3	0	0	0	0.42348	1	14423	14423		23.148	2.2772	1	1212600	+		12826	12111	8469	8532	17432	17432					0.0654240996829003
LYRWCTKW	8	Unmodified	_LYRWCTKW_					0	0	0			REV__ABCC9|p.P978T|1|0.14|ENSG00000069431|chr12:21845767-21845767|G/T|missense_variant	REV__ABCC9|p.P978T|1|0.14|ENSG00000069431|chr12:21845767-21845767|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.8139038085938	2	578.292037	1154.56952	0.78014	0.00045115	2.3849	0.0013792	3.1651	0.0018303	578.2951014865064	67.549	0.43562	67.613	67.347	67.783	0.063988					22	14	3	0	0	0	0.3576	1	15484	15484		6.3541	0	1	115430	+		12827	7686	8470	8533	17433	17433					-0.0015818695503639901
LYRWLPSRR	9	Unmodified	_LYRWLPSRR_					0	0	0		ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1	ENSG00000136986|ENST00000259512|DERL1	ENSG00000136986|ENST00000259512|DERL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2436828613281	3	416.243763	1245.70946	-0.19378	-8.0659E-05	-0.17088	-7.1127E-05	-0.36466	-0.00015179	416.2437220500533	43.502	3.6434	43.591	42.753	46.397	0.088924					422	135	5	0	0	0	0.29334	2	8875	8825;8875		7.609	0	1	2861300			12828	2825	8471	8534	17434;17435	17435					0.0964331337368094
LYRYGLIMQS	10	Unmodified	_LYRYGLIMQS_					0	0	0			REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2	REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7973022460938	2	622.328816	1242.64308	-0.26867	-0.0001672	-1.5687	-0.00097622	-1.8373	-0.0011434	622.3276519984375	73.555	0.13398	73.555	73.464	73.598	0					9	4	3	0	0	0	0.31731	1	17470	17470		6.2058	0.97511	1	58181	+		12829	8416	8472	8535	17436	17436					0.031463166967796496
LYSALFDWIV	10	Unmodified	_LYSALFDWIV_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B-ABHD8|1|fusion;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A;MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A	ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.276611328125	2	613.826432	1225.63831	-0.012426	-7.6273E-06	0.081127	4.9798E-05	0.068701	4.217E-05	613.8268754832147	74.228	0.33086	74.228	74.095	74.426	0					16	11	2	0	0	0	0.31712	1	17756	17756		6.7232	0	1	120200			12830	1123;7441;7166	8473	8536	17437	17437					0.03451755825631153
LYSAPRVWW	9	Unmodified	_LYSAPRVWW_					0	0	0		nc|ENSG00000128309|P25325|MPST;ENST00000485587.1_1_22:37419962-37421138:+|nuORF;ENSG00000128309|ENST00000429360|MPST	nc|ENSG00000128309|P25325|MPST	nc|ENSG00000128309|P25325|MPST	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3270263671875	2	589.311284	1176.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.293	1	52.36	51.86	52.86	0.067173								0	0	0	0.25692	1	10875	10875		7.9102	2.1783	1				12831	2392	8474	8537	17438	17438					0.026774419511411907
LYSCIVQMF	9	Unmodified	_LYSCIVQMF_					0	0	0		ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3267822265625	2	552.266838	1102.51912	0.74056	0.00040899	2.6227	0.0014484	3.3633	0.0018574	552.7700878497722	70.513	0.18433	70.574	70.507	70.691	0.060562					10	7	2	0	0	0	0.24263	1	16429	16429		12.532	0	1	61686			12832	5769	8475	8538	17439	17439					-0.028034773950594172
LYSCTDWPH	9	Unmodified	_LYSCTDWPH_					0	0	0		ENST00000543744.1_1_12:7061038-7061341:+|nuORF;ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000543744.1_1_12:7061038-7061341:+|nuORF	ENST00000543744.1_1_12:7061038-7061341:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.795166015625	2	561.239667	1120.46478	0.31589	0.00017729	0.81643	0.00045821	1.1323	0.00063551	561.2400304743855	89.061	0.5444	89.061	88.845	89.39	0					36	21	2	0	0	0	0.25579	1	22179	22179		4.3292	3.7277	1	78395			12833	6424	8476	8539	17440	17440					-0.09063353222268233
LYSELFTLL	9	Unmodified	_LYSELFTLL_					0	0	0		nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.80810546875	2	549.807708	1097.60086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.623	1	99.623	99.123	100.12	0								0	0	0	0.19239	1	25430	25430		19.257	4.4187	1				12834	5232	8477	8540	17441	17441					0.05596664560061981
LYSELFTLL	9	Unmodified	_LYSELFTLL_					0	0	0		nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8084716796875	2	549.807708	1097.60086	0.61153	0.00033622	0.24219	0.00013316	0.85372	0.00046938	549.8078979491805	99.687	0.3115	99.73	99.534	99.845	0.042839					34	20	2	0	0	0	0.30005	1	25259	25259		6.7232	0	1	551910			12835	5232	8477	8540	17442	17442					0.05596664560061981
LYSELFTLL	9	Unmodified	_LYSELFTLL_					0	0	0		nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	549.807708	1097.60086	0.52762	0.00029009	0.011333	6.2309E-06	0.53895	0.00029632	549.8077238929582	99.829	0.15109	99.829	99.788	99.939	0	0.049341	-0.00017558	NaN	6.7232	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405240			12836	5232	8477	8540							0.05596664560061981
LYSELQARETF	11	Unmodified	_LYSELQARETF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2320556640625	3	452.897987	1355.67213	-0.027088	-1.2268E-05	-0.61219	-0.00027726	-0.63928	-0.00028953	452.8977016504188	44.153	0.55688	44.153	43.945	44.502	0					28	18	2	0	0	0	0.39158	1	8549	8549		6.2344	0	1	58996			12837	4738	8478	8541	17443	17443					0.008521325267338398
LYSEQRQP	8	Unmodified	_LYSEQRQP_					0	0	0			REV__ENST00000462381.1_1_7:73151257-73151715:-|nuORF	REV__ENST00000462381.1_1_7:73151257-73151715:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.287353515625	2	510.759081	1019.50361	0.32366	0.00016531	4.285	0.0021886	4.6086	0.0023539	511.2626183052195	52.743	0.15863	52.81	52.695	52.853	0.067173					8	6	2	0	0	0	0.3576	1	11008	11008		7.2892	2.5332	1	45727	+		12838	8567	8479	8542	17444	17444					-0.005363045962326396
LYSEVDVHF	9	Unmodified	_LYSEVDVHF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2708740234375	2	554.769114	1107.52368	0.47078	0.00026117	0.18648	0.00010346	0.65726	0.00036463	554.7688853413645	59.706	0.77541	59.706	59.535	60.31	0					63	29	3	0	0	0	1.1119E-05	2	13287	13246;13287		147.83	147.83	1	780110			12839	3160	8480	8543	17445;17446	17446					-0.025785536562807465
LYSEVDVHF	9	Unmodified	_LYSEVDVHF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7686157226562	2	554.769114	1107.52368	0.41978	0.00023288	0.11399	6.3238E-05	0.53377	0.00029612	554.7688743772549	59.628	0.87679	59.7	59.52	60.397	0.072342					78	33	4	0	0	0	2.3187E-06	2	13090	13090;13137		156.16	118	1	682190			12840	3160	8480	8543	17447;17448	17447					-0.025785536562807465
LYSGPDRYIF	10	Unmodified	_LYSGPDRYIF_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.299072265625	2	615.811313	1229.60807	-0.19851	-0.00012224	0.80967	0.00049861	0.61117	0.00037636	615.81147381562	78.051	0.70676	78.051	77.772	78.479	0					53	23	4	0	0	0	0.34138	1	18937	18937		18.146	3.741	1	436120	+		12841	12362;7964	8481	8544	17449	17449					0.002453971604609251
LYSGPDRYIF	10	Unmodified	_LYSGPDRYIF_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.2990112304688	2	615.811313	1229.60807	0.042644	2.6261E-05	0.52192	0.00032141	0.56457	0.00034767	615.8113404873884	78.008	0.58247	78.042	77.822	78.405	0.034485					43	19	4	0	0	0	0.16299	2	18664	18664;18761		37.974	6.7057	1	485620	+		12842	12362;7964	8481	8544	17450;17451	17450					0.002453971604609251
LYSGVFVAF	9	Unmodified	_LYSGVFVAF_					0	0	0		ENST00000236067.8_1_1:44440634-44441766:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF;ENST00000468183.5_1_1:44440655-44441072:+|nuORF;ENSG00000117410|ENST00000472174|ATP6V0B	ENST00000236067.8_1_1:44440634-44441766:+|nuORF	ENST00000236067.8_1_1:44440634-44441766:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.7684631347656	2	501.768386	1001.52222	0.30904	0.00015507	0.37203	0.00018667	0.68107	0.00034174	501.76820511434096	86.364	0.43073	86.389	86.197	86.628	0.025169					31	16	3	0	0	0	0.092418	1	21253	21253		34.102	5.6156	1	158550			12843	2000	8482	8545	17452	17452					0.021518570456123598
LYSGVFVAF	9	Unmodified	_LYSGVFVAF_					0	0	0		ENST00000236067.8_1_1:44440634-44441766:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF;ENST00000468183.5_1_1:44440655-44441072:+|nuORF;ENSG00000117410|ENST00000472174|ATP6V0B	ENST00000236067.8_1_1:44440634-44441766:+|nuORF	ENST00000236067.8_1_1:44440634-44441766:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	501.768386	1001.52222	0.13913	6.9809E-05	0.018151	9.1077E-06	0.15728	7.8917E-05	501.7682704129168	86.412	0.43356	86.412	86.205	86.639	0	0.011438	-0.0002099	NaN	34.102	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115000			12844	2000	8482	8545							0.021518570456123598
LYSHLVDYF	9	Unmodified	_LYSHLVDYF_					0	0	0		ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000088256|ENST00000078429|GNA11	ENST00000590534.1_1_19:3119101-3121174:+|nuORF	ENST00000590534.1_1_19:3119101-3121174:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.288818359375	2	578.787307	1155.56006	0.77612	0.00044921	-0.5775	-0.00033425	0.19861	0.00011496	578.7868473613644	66.759	0.49368	66.824	66.63	67.124	0.065071					33	18	2	0	0	0	0.23598	1	15349	15349		15.847	6.4641	1	483200			12845	1008	8483	8546	17453	17453					-0.01149676759587237
LYSILSIKF	9	Unmodified	_LYSILSIKF_					0	0	0			REV__tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1	REV__tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.3248291015625	2	542.326068	1082.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.756	1	99.799	99.299	100.3	0.042839								0	0	0	0.16041	1	25314	25314		24.021	2.2739	1		+		12846	13221	8484	8547	17454	17454					0.09956961176612822
LYSITYFWF	9	Unmodified	_LYSITYFWF_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.308349609375	2	620.307875	1238.6012	0.04305	2.6704E-05	0.63142	0.00039168	0.67447	0.00041838	620.3081090389188	96.825	0.9913	96.825	96.447	97.438	0					87	46	2	0	0	0	0.21398	1	24557	24557		16.942	2.5369	1	335730	+		12847	9162	8485	8548	17455	17455					-0.008559157201034395
LYSITYFWF	9	Unmodified	_LYSITYFWF_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.8106079101562	2	620.307875	1238.6012	0.04305	2.6704E-05	0.63142	0.00039168	0.67447	0.00041838	620.3081090389188	96.825	0.9913	96.825	96.447	97.438	0					87	46	2	0	0	0	0.24263	1	24608	24608		12.532	0	1	335730	+		12848	9162	8485	8548	17456	17456					-0.008559157201034395
LYSITYFWF	9	Unmodified	_LYSITYFWF_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3080444335938	2	620.307875	1238.6012	0.16981	0.00010533	0.50282	0.00031191	0.67263	0.00041724	620.3080112652741	96.7	0.94389	96.74	96.472	97.416	0.039772					93	46	3	0	0	0	0.29105	2	24457	24457;24463		7.9102	0.80843	1	316460	+		12849	9162	8485	8548	17457;17458	17457					-0.008559157201034395
LYSKIEALL	9	Unmodified	_LYSKIEALL_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7966918945312	2	525.3157	1048.61685	0.51788	0.00027205	-0.62723	-0.00032949	-0.10935	-5.7443E-05	525.3152995496682	64.577	0.48717	64.577	64.382	64.87	0					28	17	2	0	0	0	0.24929	1	14823	14823		9.3831	0	1	193160			12850	2048	8486	8549	17459	17459					0.09448370796940253
LYSKIEALL	9	Unmodified	_LYSKIEALL_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.315673828125	2	525.3157	1048.61685	0.3243	0.00017036	-0.40213	-0.00021125	-0.077839	-4.089E-05	525.3154635706604	64.47	0.41352	64.539	64.401	64.815	0.068916					25	15	2	0	0	0	0.16392	1	14602	14602		22.736	2.2827	1	109650			12851	2048	8486	8549	17460	17460					0.09448370796940253
LYSKRNYH	8	Unmodified	_LYSKRNYH_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|159|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|159|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|159|3|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2720947265625	2	540.78289	1079.55123	0.38222	0.0002067	0.16126	8.7208E-05	0.54348	0.0002939	540.7831255177382	88.807	0.3987	88.807	88.584	88.982	0					24	16	2	0	0	0	0.3576	1	22193	22193		2.0598	0.21551	1	74112			12852	7396	8487	8550	17461	17461					0.014633943946137151
LYSLHPEKF	9	Unmodified	_LYSLHPEKF_					0	0	0		ENST00000341469.6_1_9:100848743-100848965:-|nuORF	ENST00000341469.6_1_9:100848743-100848965:-|nuORF	ENST00000341469.6_1_9:100848743-100848965:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2792358398438	2	567.303124	1132.5917	0.50585	0.00028697	-0.64291	-0.00036472	-0.13706	-7.7753E-05	567.3026318712606	67.886	0.71245	67.95	67.696	68.408	0.063507					53	25	3	0	0	0	0.18479	1	15653	15653		26.884	14.352	1	321140			12853	6087	8488	8551	17462	17462					0.030703159943641367
LYSMMKKHEE	10	Unmodified	_LYSMMKKHEE_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.3079833984375	2	648.309766	1294.60498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.177	1	89.177	88.677	89.677	0								0	0	0	0.3327	1	22252	22252		8.7454	2.0222	1				12854	3485	8489	8552	17463	17463					-0.030539372801740683
LYSNIAFNL	9	Unmodified	_LYSNIAFNL_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7817993164062	2	527.782025	1053.5495	0.25769	0.000136	0.60928	0.00032157	0.86697	0.00045757	527.7819825898658	78.966	0.4341	78.966	78.754	79.188	0					34	14	3	0	0	0	0.0034159	2	19129	19129;19180		107.1	59.351	1	480140			12855	2734	8490	8553	17464;17465	17464					0.02486340585983271
LYSNIAFNL	9	Unmodified	_LYSNIAFNL_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7822265625	2	527.782025	1053.5495	0.26353	0.00013908	0.52448	0.00027681	0.788	0.00041589	527.782049559065	78.943	0.51461	78.973	78.738	79.253	0.030159					36	17	3	0	0	0	0.0011184	2	18965	18965;19012		121.53	69.266	1	600030			12856	2734	8490	8553	17466;17467	17466					0.02486340585983271
LYSNKCWHY	9	Unmodified	_LYSNKCWHY_					0	0	0		ENST00000582730.6_1_17:56081538-56081670:-|nuORF	ENST00000582730.6_1_17:56081538-56081670:-|nuORF	ENST00000582730.6_1_17:56081538-56081670:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2547607421875	2	607.276583	1212.53861	0.7956	0.00048315	-1.1094	-0.00067371	-0.31379	-0.00019056	607.2762154091262	77.848	0.2886	77.882	77.796	78.085	0.034485					18	9	3	0	0	0	0.25051	1	18629	18629		7.9102	0	1	80083			12857	7227	8491	8554	17468	17468					-0.059153850599386715
LYSPRDYGLL	10	Unmodified	_LYSPRDYGLL_					0	0	0		ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8206787109375	2	598.819138	1195.62372	0.39016	0.00023363	0.1257	7.5271E-05	0.51586	0.0003089	598.8191038852257	77.904	0.46724	77.939	77.649	78.116	0.034485					27	15	2	0	0	0	0.43672	1	18695	18695		7.2892	1.0834	1	150760			12858	4833	8492	8555	17469	17469					0.033736836775233314
LYSPTWEGSQ	10	Unmodified	_LYSPTWEGSQ_					0	0	0		nc|ENSG00000115325|Q99704-3|DOK1;DOK1|p.D363*|1|0.14|ENSG00000115325|chr2:74556753-74556754|-/T|frameshift_variant;ENSG00000115325|ENST00000233668|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2900390625	2	584.269478	1166.5244	0.49359	0.00028839	-1.4894	-0.00087019	-0.99577	-0.0005818	584.2686595183379	95.075	0.51318	95.075	94.715	95.228	0					35	21	2	0	0	0	0.31794	1	24071	24071		3.5965	2.267	1	86506			12859	297	8493	8556	17470	17470					-0.052197590072410094
LYSQLQVFF	9	Unmodified	_LYSQLQVFF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000492562.5_1_X:48334751-48340044:+|nuORF;ENST00000466371.5_1_X:48339567-48341236:+|nuORF;nc|ENSG00000068438|Q9UET6-2|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8056030273438	2	572.8055	1143.59645	0.29735	0.00017033	-0.1826	-0.0001046	0.11475	6.573E-05	572.805312931363	88.866	0.86155	88.866	88.584	89.445	0					99	35	4	0	0	0	0.0014903	1	22151	22151		118.89	19.096	1	1283000			12860	730	8494	8557	17471	17471					0.030392001371410515
LYSQLQVFF	9	Unmodified	_LYSQLQVFF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000492562.5_1_X:48334751-48340044:+|nuORF;ENST00000466371.5_1_X:48339567-48341236:+|nuORF;nc|ENSG00000068438|Q9UET6-2|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.8056640625	2	572.8055	1143.59645	0.30879	0.00017687	-0.20128	-0.00011529	0.10751	6.158E-05	572.805298256794	88.799	0.83572	88.831	88.578	89.414	0.032257					104	33	4	0	0	0	5.0762E-05	1	21965	21965		139.14	27.851	1	1489400			12861	730	8494	8557	17472	17472					0.030392001371410515
LYSRLFSWL	9	Unmodified	_LYSRLFSWL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.7473754882812	2	592.826766	1183.63898	0.7553	0.00044776	-1.4015	-0.00083087	-0.64625	-0.00038311	592.825746143743	81.737	0.96444	81.737	81.461	82.426	0					50	33	2	0	0	0	0.22247	1	20114	20114		20.415	6.5085	1	773880			12862	2405	8495	8558	17473	17473					0.054505952653926215
LYSSEQLLI	9	Unmodified	_LYSSEQLLI_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2951049804688	2	533.294965	1064.57538	0.09635	5.1383E-05	0.55242	0.0002946	0.64877	0.00034599	533.2951391334766	73.311	0.51603	73.311	73.145	73.661	0					33	18	2	0	0	0	0.028398	2	17411	17411;17463		52.268	16.141	1	450150			12863	4268	8496	8559	17474;17475	17474					0.04567190037619184
LYSSEQLLI	9	Unmodified	_LYSSEQLLI_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2952880859375	2	533.294965	1064.57538	0.38179	0.0002036	0.10411	5.552E-05	0.48589	0.00025912	533.2950833003006	73.301	0.52916	73.354	73.062	73.591	0.052574					30	20	2	0	0	0	0.032194	1	17241	17241		49.554	17.249	1	249690			12864	4268	8496	8559	17476	17476					0.04567190037619184
LYSTDFIVF	9	Unmodified	_LYSTDFIVF_					0	0	0		ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant	ENSG00000188994|ENST00000369577|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7842407226562	2	552.784233	1103.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.147	1	91.147	90.647	91.647	0								0	0	0	0.037462	1	22853	22853		53.576	15.424	1				12865	5184	8497	8560	17477	17477					0.006278050089122189
LYSVILFCVF	10	Unmodified	_LYSVILFCVF_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3138427734375	2	602.327753	1202.64095	0.4448	0.00026792	-1.6816	-0.0010129	-1.2368	-0.00074497	602.3267397387284	83.2	0.3739	83.222	82.987	83.361	0.021744					21	12	2	0	0	0	0.31783	1	20244	20244		3.9444	1.6417	1	85615			12866	4270	8498	8561	17478	17478					0.04773887958958767
LYSVILFCVF	10	Unmodified	_LYSVILFCVF_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	602.327753	1202.64095	0.5879	0.00035411	-1.2659	-0.00076249	-0.67801	-0.00040839	602.3268981526757	83.205	0.38409	83.205	82.957	83.341	0	-0.0083464	0.00034124	NaN	3.9444	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114690			12867	4270	8498	8561							0.04773887958958767
LYSVTVKWGK	10	Unmodified	_LYSVTVKWGK_					0	0	0		USP14-THOC1|2|fusion;USP14-THOC1|1|fusion;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	USP14-THOC1|2|fusion	USP14-THOC1|2|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.858154296875	2	590.839874	1179.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.892	1	50.962	50.462	51.462	0.069874								0	0	0	0.33215	1	10450	10450		9.3831	0	1				12868	1265	8499	8562	17479	17479					0.082548644368444
LYSVVFQEI	9	Unmodified	_LYSVVFQEI_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF;nc|ENSG00000130021|Q08623-2|PUDP;nc|ENSG00000130021|Q08623-3|PUDP;ENSG00000130021|ENST00000381077|PUDP;nc|ENSG00000130021|Q08623-4|PUDP	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7376098632812	2	549.297507	1096.58046	0.88416	0.00048566	0.52908	0.00029062	1.4132	0.00077629	549.2981453813101	80.832	0.23145	80.832	80.728	80.959	0					14	7	3	0	0	0	0.18151	1	19703	19703		29.841	16.798	1	61425			12869	2446	8500	8563	17480	17480					0.03603493900254762
LYSVVFQEI	9	Unmodified	_LYSVVFQEI_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF;nc|ENSG00000130021|Q08623-2|PUDP;nc|ENSG00000130021|Q08623-3|PUDP;ENSG00000130021|ENST00000381077|PUDP;nc|ENSG00000130021|Q08623-4|PUDP	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7371826171875	2	549.297507	1096.58046	0.72173	0.00039645	0.19662	0.000108	0.91835	0.00050445	549.2978115119391	80.833	0.23147	80.856	80.708	80.94	0.023605					10	7	2	0	0	0	0.16392	1	19543	19543		32.786	17.947	1	66148			12870	2446	8500	8563	17481	17481					0.03603493900254762
LYSYVPSVL	9	Unmodified	_LYSYVPSVL_					0	0	0			REV__nc|ENSG00000103356|Q5JPH6-2|EARS2	REV__nc|ENSG00000103356|Q5JPH6-2|EARS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3004760742188	2	520.786776	1039.559	0.56177	0.00029256	-3.2024	-0.0016677	-2.6406	-0.0013752	520.7851451861859	64.613	0.33906	64.613	64.457	64.796	0					19	11	2	0	0	0	0.24263	1	14806	14806		7.9102	0	1	137620	+		12871	12768	8501	8564	17482	17482					0.04080108871517041
LYSYVPSVL	9	Unmodified	_LYSYVPSVL_					0	0	0			REV__nc|ENSG00000103356|Q5JPH6-2|EARS2	REV__nc|ENSG00000103356|Q5JPH6-2|EARS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.3004150390625	2	520.786776	1039.559	0.39901	0.0002078	-3.3983	-0.0017698	-2.9993	-0.001562	520.7850394948767	64.465	0.36944	64.534	64.401	64.771	0.068916					22	13	2	0	0	0	0.24263	1	14630	14630		12.532	0.89125	1	64877	+		12872	12768	8501	8564	17483	17483					0.04080108871517041
LYTALQQYF	9	Unmodified	_LYTALQQYF_					0	0	0		nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5	nc|ENSG00000089053|Q9UJX4-2|ANAPC5	nc|ENSG00000089053|Q9UJX4-2|ANAPC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7951049804688	2	573.795132	1145.57571	0.46852	0.00026884	-0.39679	-0.00022767	0.071738	4.1163E-05	573.7948737756003	79.396	0.68065	79.396	79.188	79.869	0					64	23	4	0	0	0	0.00081324	1	19271	19271		126.57	58.485	1	828050			12873	1024	8502	8565	17484	17484					0.008746097574885425
LYTALQQYF	9	Unmodified	_LYTALQQYF_					0	0	0		nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5	nc|ENSG00000089053|Q9UJX4-2|ANAPC5	nc|ENSG00000089053|Q9UJX4-2|ANAPC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7950439453125	2	573.795132	1145.57571	0.21814	0.00012517	-0.17275	-9.9121E-05	0.045394	2.6047E-05	573.7949776880687	79.386	0.63705	79.412	79.162	79.799	0.026428					62	22	4	0	0	0	0.0040275	3	19139	19094;19139;19199		103.35	53.421	1	699940			12874	1024	8502	8565	17485;17486;17487	17486					0.008746097574885425
LYTDITVLRT	10	Unmodified	_LYTDITVLRT_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3402709960938	2	597.840071	1193.66559	0.21064	0.00012593	-0.011536	-6.8967E-06	0.19911	0.00011903	597.8401129131925	78.705	1.2089	78.705	78.073	79.282	0					109	41	3	0	0	0	0.41688	1	18929	18929		10.074	0.6908	1	1128400			12875	2851	8503	8566	17488	17488					0.07650239366012102
LYTEAIKFF	9	Unmodified	_LYTEAIKFF_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.3082885742188	2	566.307875	1130.6012	0.20524	0.00011623	0.31484	0.00017829	0.52007	0.00029452	566.3079905933052	71.603	0.78574	71.603	71.386	72.172	0					55	27	3	0	0	0	0.0040275	1	16888	16888		103.35	63.396	1	623050			12876	530	8504	8567	17489	17489					0.04112084279881856
LYTEAIKFF	9	Unmodified	_LYTEAIKFF_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.3076782226562	2	566.307875	1130.6012	0.2146	0.00012153	0.53194	0.00030124	0.74654	0.00042277	566.3080302683217	71.53	0.52378	71.589	71.346	71.869	0.058578					43	18	3	0	0	0	0.0010793	2	16720	16720;16774		122.18	80.34	1	624200			12877	530	8504	8567	17490;17491	17490					0.04112084279881856
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2993774414062	2	603.289879	1204.56521	0.37965	0.00022904	-1.7923	-0.0010813	-1.4126	-0.00085222	603.288489320712	56.594	0.45341	56.594	56.404	56.857	0					32	16	4	0	0	0	0.00021732	2	12323	12313;12323		136.39	94.298	1	1519700			12878	950	8505	8568	17492;17493	17493					-0.028894176876065103
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.299560546875	2	603.289879	1204.56521	0.47328	0.00028552	-1.2285	-0.00074111	-0.75518	-0.00045559	603.2891754359301	56.556	0.39147	56.623	56.434	56.825	0.066452					27	13	3	0	0	0	0.00021732	2	12165	12156;12165		136.39	81.619	1	1360400			12879	950	8505	8568	17494;17495	17495					-0.028894176876065103
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2979736328125	2	603.289879	1204.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.626	1	56.693	56.193	57.193	0.066452								0	0	0	1.715E-09	1	12197	12197		125.04	85.08	1				12880	950	8505	8568	17496	17496					-0.028894176876065103
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3012084960938	2	603.289879	1204.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.689	1	56.756	56.256	57.256	0.066452								0	0	0	4.3816E-05	1	12216	12216		96.936	46.081	1				12881	950	8505	8568	17497	17497					-0.028894176876065103
LYTELFTGF	9	Unmodified	_LYTELFTGF_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.777099609375	2	545.776408	1089.53826	0.26257	0.0001433	-1.3682	-0.00074675	-1.1057	-0.00060345	545.7756182192092	89.075	0.74513	89.075	88.845	89.59	0					61	28	3	0	0	0	0.23216	1	22337	22337		14.838	0	1	189300			12882	3818	8506	8569	17498	17498					-0.0029248150810872175
LYTELFTGF	9	Unmodified	_LYTELFTGF_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.278564453125	2	545.776408	1089.53826	0.268	0.00014627	-1.435	-0.00078317	-1.167	-0.0006369	545.775538645238	89.204	0.77994	89.236	88.823	89.603	0.032265					51	29	2	0	0	0	0.074645	1	22147	22147		37.974	12.575	1	178010			12883	3818	8506	8569	17499	17499					-0.0029248150810872175
LYTGGDAF	8	Unmodified	_LYTGGDAF_					0	0	0			REV__ENSG00000171160|ENST00000307450|MORN4	REV__ENSG00000171160|ENST00000307450|MORN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1722106933594	2	422.197793	842.381034	0.23818	0.00010056	0.79004	0.00033355	1.0282	0.00043411	422.1986509577111	74.889	1.0933	74.933	74.097	75.19	0.04454					63	39	3	0	0	0	0.53257	1	17792	17792		6.3541	3.4649	1	125430	+		12884	10244	8507	8570	17500	17500					-0.04646141327668829
LYTGWTDPF	9	Unmodified	_LYTGWTDPF_					0	0	0			REV__nc|ENSG00000189430|O76036-6|NCR1	REV__nc|ENSG00000189430|O76036-6|NCR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7918701171875	2	550.258382	1098.50221	0.62394	0.00034333	0.30688	0.00016886	0.93082	0.00051219	550.2585717109464	93.392	0.49932	93.392	93.187	93.686	0					39	19	3	0	0	0	0.24263	1	23516	23516		12.532	5.2423	1	97161	+		12885	12865	8508	8571	17501	17501					-0.04309938685014458
LYTGWTDPF	9	Unmodified	_LYTGWTDPF_					0	0	0			REV__nc|ENSG00000189430|O76036-6|NCR1	REV__nc|ENSG00000189430|O76036-6|NCR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.79248046875	2	550.258382	1098.50221	0.59629	0.00032811	0.15412	8.4805E-05	0.75041	0.00041292	550.2584759369156	93.409	0.40395	93.447	93.271	93.674	0.037369					32	16	3	0	0	0	0.24263	1	23393	23393		12.532	1.4171	1	67202	+		12886	12865	8508	8571	17502	17502					-0.04309938685014458
LYTHHFRS	8	Unmodified	_LYTHHFRS_					0	0	0			REV__RUNX3|p.A299D|1|0.21|ENSG00000020633|chr1:24902474-24902474|G/T|missense_variant	REV__RUNX3|p.A299D|1|0.21|ENSG00000020633|chr1:24902474-24902474|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.758056640625	2	530.769783	1059.52501	0.19302	0.00010245	-1.4391	-0.00076385	-1.2461	-0.0006614	530.7689940158855	51.035	0.5904	51.035	50.795	51.386	0					37	19	3	0	0	0	0.50815	1	10604	10604		11.64	1.4569	1	388080	+		12887	7997	8509	8572	17503	17503					-0.0023687477687417413
LYTIETEQKD	10	Unmodified	_LYTIETEQKD_					0	0	0			REV__ENST00000461177.1_1_9:107526493-107533549:+|nuORF	REV__ENST00000461177.1_1_9:107526493-107533549:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.308349609375	2	620.3088	1238.60305	0.16981	0.00010533	-0.98877	-0.00061334	-0.81896	-0.00050801	620.3080112652741	96.7	0.94389	96.74	96.472	97.416	0.039772					93	46	3	0	0	0	0.26541	1	24406	24406		26.268	1.2772	1	316460	+		12888	10017	8510	8573	17504	17504					-0.006709514927933924
LYTILDPKF	9	Unmodified	_LYTILDPKF_					0	0	0			REV__ENSG00000214652|ENST00000456806|ZNF727	REV__ENSG00000214652|ENST00000456806|ZNF727	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3157958984375	2	555.3157	1108.61685	0.63968	0.00035522	-0.48317	-0.00026831	0.15651	8.6913E-05	555.315313544774	68.993	0.60416	68.993	68.692	69.296	0					35	22	2	0	0	0	0.21398	1	16087	16087		16.942	0	1	238880	+		12889	11007	8511	8574	17505	17505					0.06688370796950949
LYTILTTQL	9	Unmodified	_LYTILTTQL_					0	0	0		nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2	nc|ENSG00000128654|O75431-2|MTX2	nc|ENSG00000128654|O75431-2|MTX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3133544921875	2	533.313158	1064.61176	0.52462	0.00027979	0.38456	0.00020509	0.90918	0.00048488	533.3131692416312	79.435	0.52317	79.435	79.188	79.711	0					33	17	3	0	0	0	0.032194	1	19280	19280		49.554	28.017	1	301790			12890	2406	8512	8575	17506	17506					0.08204066934331422
LYTILTTQL	9	Unmodified	_LYTILTTQL_					0	0	0		nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2	nc|ENSG00000128654|O75431-2|MTX2	nc|ENSG00000128654|O75431-2|MTX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3133544921875	2	533.313158	1064.61176	0.39661	0.00021152	0.18921	0.00010091	0.58582	0.00031243	533.3131306902029	79.397	0.45328	79.423	79.195	79.648	0.026428					37	16	3	0	0	0	0.0072241	2	19103	19103;19147		75.761	46.679	1	216110			12891	2406	8512	8575	17507;17508	17507					0.08204066934331422
LYTKNKVSLE	10	Unmodified	_LYTKNKVSLE_					0	0	0		tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1	tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1	tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8402709960938	2	597.840071	1193.66559	0.24688	0.00014759	-0.060162	-3.5967E-05	0.18671	0.00011163	597.8400971090493	78.74	1.2542	78.77	78.138	79.392	0.030159					106	43	3	0	0	0	0.42335	1	19005	19005		9.3831	0	1	1179300			12892	13446	8513	8576	17509	17509					0.07650239366034839
LYTLYVAFV	9	Unmodified	_LYTLYVAFV_					0	0	0			REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF	REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.31689453125	2	544.804968	1087.59538	0.54924	0.00029923	-1.9918	-0.0010852	-1.4426	-0.00078593	544.8036544476645	97.373	0.28179	97.373	97.156	97.438	0					30	11	4	0	0	0	0.28587	1	24729	24729		8.5933	0	1	366300	+		12893	12503	8514	8577	17510	17510					0.0550898576821055
LYTLYVAFV	9	Unmodified	_LYTLYVAFV_					0	0	0			REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF	REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8038330078125	2	544.804968	1087.59538	0.54924	0.00029923	-1.9918	-0.0010852	-1.4426	-0.00078593	544.8036544476645	97.373	0.28179	97.373	97.156	97.438	0					30	11	4	0	0	0	0.25051	1	24750	24750		7.9102	0	1	366300	+		12894	12503	8514	8577	17511	17511					0.0550898576821055
LYTPHSWLL	9	Unmodified	_LYTPHSWLL_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS;LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7977905273438	2	565.305667	1128.59678	0.37328	0.00021102	-0.028177	-1.5929E-05	0.34511	0.00019509	565.3054850592597	68.385	0.8878	68.385	68.07	68.958	0					40	32	2	0	0	0	0.20004	1	15877	15877		23.148	5.0134	1	256640			12895	3755	8515	8578	17512	17512					0.03762619857002392
LYTPVLIRF	9	Unmodified	_LYTPVLIRF_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1;ENST00000528096.1_1_11:67766987-67770655:-|nuORF;ENST00000530138.3_1_11:67766987-67771573:-|nuORF	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8031616210938	2	561.33951	1120.66447	0.46827	0.00026286	0.17272	9.6954E-05	0.64099	0.00035981	561.339847725324	74.645	0.58527	74.645	74.426	75.011	0					44	21	3	0	0	0	0.081719	1	17819	17819		49.933	29.479	1	439180			12896	1650	8516	8579	17513	17513					0.10896069787804663
LYTPVLIRF	9	Unmodified	_LYTPVLIRF_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1;ENST00000528096.1_1_11:67766987-67770655:-|nuORF;ENST00000530138.3_1_11:67766987-67771573:-|nuORF	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.80322265625	2	561.33951	1120.66447	0.49855	0.00027986	0.25777	0.00014469	0.75632	0.00042455	561.3398808991537	74.612	0.57796	74.66	74.45	75.028	0.048546					46	20	4	0	0	0	0.11557	1	17651	17651		41.84	27.001	1	426840			12897	1650	8516	8579	17514	17514					0.10896069787804663
LYTPYMWDF	9	Unmodified	_LYTPYMWDF_					0	0	0			REV__ENSG00000204764|ENST00000523189|RANBP17	REV__ENSG00000204764|ENST00000523189|RANBP17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	413.1934509277344	3	412.519571	1234.53688	0.47283	0.00019505	4.2232	0.0017422	4.6961	0.0019372	412.52123092204454	74.245	0.11594	74.245	74.171	74.287	0					5	3	2	0	0	0	0.2491	1	17704	17704		8.7454	0.58988	1	71090	+		12898	10955	8517	8580	17515	17515					-0.07100438868542369
LYTQFMDR	8	Unmodified	_LYTQFMDR_					0	0	0		RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant;RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF	RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant	RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2584228515625	2	537.257859	1072.50117	0.32997	0.00017728	0.55839	0.0003	0.88835	0.00047727	537.2580268808089	90.996	1.1652	91.031	90.745	91.91	0.035446					114	42	5	0	0	0	0.4772	1	22619	22619		15.847	2.3393	1	2968600			12899	3981	8518	8581	17516	17516					-0.032184763255600046
LYTSLGSSISA	11	Unmodified	_LYTSLGSSISA_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.287353515625	2	549.787504	1097.56045	0.2604	0.00014316	0.12219	6.7178E-05	0.38259	0.00021034	550.2881851133238	91.076	1.1327	91.111	90.778	91.91	0.035446					100	40	4	0	0	0	0.173	2	22701	22701;22757		34.402	6.7729	1	364090			12900	3449	8519	8582	17517;17518	17517					0.015576981696312941
LYTVVVYDF	9	Unmodified	_LYTVVVYDF_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8133544921875	2	559.792058	1117.56956	0.68125	0.00038136	-1.4652	-0.00082022	-0.78397	-0.00043886	559.7908435950444	83.799	0.44003	83.799	83.55	83.99	0					32	14	3	0	0	0	0.19398	1	20611	20611		19.257	3.1079	1	256640			12901	2734	8520	8583	17519	17519					0.015480915259331596
LYTVVVYDF	9	Unmodified	_LYTVVVYDF_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8136596679688	2	559.792058	1117.56956	0.45006	0.00025194	-1.36	-0.00076133	-0.90996	-0.00050939	559.7910530675267	83.771	0.67677	83.792	83.589	84.266	0.021744					53	24	3	0	0	0	0.23216	1	20487	20487		14.838	6.0929	1	363160			12902	2734	8520	8583	17520	17520					0.015480915259331596
LYTYKFTYN	9	Unmodified	_LYTYKFTYN_					0	0	0		tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8038940429688	2	606.800414	1211.58628	0.94476	0.00057328	0.38835	0.00023565	1.3331	0.00080893	606.8006275355549	81.948	1.9965	81.948	81.145	83.141	0					127	69	3	0	0	0	0.31496	2	19868	19868;20356		4.756	0.81161	1	279320			12903	13595	8521	8584	17521;17522	17521					-0.01105407588079288
LYVASSLFF	9	Unmodified	_LYVASSLFF_					0	0	0		QSOX2|p.L675F|1|0.07|ENSG00000165661|chr9:136208802-136208802|G/A|missense_variant	QSOX2|p.L675F|1|0.07|ENSG00000165661|chr9:136208802-136208802|G/A|missense_variant	QSOX2|p.L675F|1|0.07|ENSG00000165661|chr9:136208802-136208802|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037109375	2	523.781493	1045.54843	0.43076	0.00022562	-1.5242	-0.00079834	-1.0934	-0.00057271	523.7809966024201	81.319	0.3132	81.341	81.108	81.421	0.021866					16	10	2	0	0	0	0.21515	1	19666	19666		13.508	0	1	124090			12904	7678	8522	8585	17523	17523					0.027481262171022536
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8026123046875	2	558.802426	1115.5903	0.13599	7.5994E-05	0.29867	0.0001669	0.43467	0.00024289	558.8025761116355	105.84	0.26253	105.84	105.63	105.89	0					93	25	5	0	0	0	0.0030029	1	27260	27260		109.63	52.158	1	3588500			12905	5037	8523	8586	17524	17524					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8025512695312	2	558.802426	1115.5903	0.12243	6.8412E-05	0.3055	0.00017071	0.42792	0.00023912	558.8025802871543	105.96	0.58667	105.96	105.88	106.46	0					157	55	4	0	0	0	0.00014496	4	27295	27295;27327;27363;27400		137.59	52.158	1	3822700			12906	5037	8523	8586	17525;17526;17527;17528	17525					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3042602539062	2	558.802426	1115.5903	0.085374	4.7707E-05	0.28023	0.0001566	0.36561	0.0002043	558.8025173748754	106.5	0.28093	106.5	106.46	106.75	0					40	26	3	0	0	0	0.0046476	3	27465	27465;27472;27509		85.357	37.011	1	233260			12907	5037	8523	8586	17529;17530;17531	17529					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8032836914062	2	558.802426	1115.5903	0.071734	4.0085E-05	0.18476	0.00010324	0.25649	0.00014333	558.8025488063897	106.82	0.12651	106.82	106.72	106.85	0					18	11	2	0	0	0	0.092418	1	27540	27540		34.102	12.356	1	116260			12908	5037	8523	8586	17532	17532					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8026733398438	2	558.802426	1115.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.4	1	106.4	105.9	106.9	0								0	0	0	0.001237	1	27435	27435		85.357	37.011	1				12909	5037	8523	8586	17533	17533					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8026123046875	2	558.802426	1115.5903	0.48112	0.00026885	-0.050739	-2.8353E-05	0.43038	0.0002405	558.8023773170146	105.87	0.65414	105.9	105.62	106.28	0.029739					230	73	4	0	0	0	0.0030029	5	27072	27038;27072;27108;27139;27171		109.63	52.158	1	4104800			12910	5037	8523	8586	17534;17535;17536;17537;17538	17535					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.802001953125	2	558.802426	1115.5903	0.46651	0.00026069	-0.21612	-0.00012077	0.25039	0.00013992	558.8022509623695	106.27	0.44404	106.3	106.24	106.68	0.029739					89	48	3	0	0	0	0.0046476	3	27203	27203;27238;27271		85.357	37.011	1	183880			12911	5037	8523	8586	17539;17540;17541	17539					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8023681640625	2	558.802426	1115.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.79	1	106.82	106.32	107.32	0.025711								0	0	0	0.05151	1	27349	27349		48.346	12.302	1				12912	5037	8523	8586	17542	17542					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8025512695312	2	558.802426	1115.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.92	1	106.94	106.44	107.44	0.025711								0	0	0	0.17567	1	27383	27383		21.747	4.6601	1				12913	5037	8523	8586	17543	17543					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.802734375	2	558.802426	1115.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107	1	107.03	106.53	107.53	0.025711								0	0	0	0.15116	1	27406	27406		25.399	8.3128	1				12914	5037	8523	8586	17544	17544					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	558.802426	1115.5903	0.4599	0.00025699	-0.24779	-0.00013847	0.21211	0.00011853	558.8021127969497	106.72	0.15762	106.74	106.62	106.78	0.025711	-0.039051	-0.00027697	NaN	34.102	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83121			12915	5037	8523	8586							0.03712681905631143
LYVEMKWF	8	Unmodified	_LYVEMKWF_					0	0	0		ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7651977539062	2	558.283346	1114.55214	0.76307	0.00042601	-3.4516	-0.001927	-2.6885	-0.001501	558.2804877334426	79.798	0.075378	79.798	79.739	79.815	0					4	2	2	0	0	0	0.34579	1	19392	19392		23.148	2.2772	1	27308			12916	4262	8524	8587	17545	17545					-0.0005552728071052115
LYVFYSSFI	9	Unmodified	_LYVFYSSFI_					0	0	0			REV__nc|ENSG00000053918|P51787-2|KCNQ1	REV__nc|ENSG00000053918|P51787-2|KCNQ1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.81298828125	2	569.794601	1137.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.18	1	106.18	105.68	106.68	0								0	0	0	0.17567	1	27372	27372		21.747	6.4982	1		+		12917	8060	8525	8588	17546	17546					0.011363953885847877
LYVGAKDHIF	10	Unmodified	_LYVGAKDHIF_					0	0	0		ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.828857421875	2	581.816399	1161.61824	0.096336	5.605E-05	0.2401	0.00013969	0.33644	0.00019574	581.8165648362605	72.267	0.20921	72.267	72.172	72.381	0					10	6	2	0	0	0	0.33099	1	17091	17091		19.257	5.3509	1	47240			12918	814	8526	8589	17547	17547					0.04390004885704002
LYVLPLSIGF	10	Unmodified	_LYVLPLSIGF_					0	0	0			REV__ENSG00000101337|ENST00000398022|TM9SF4	REV__ENSG00000101337|ENST00000398022|TM9SF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3169555664062	2	561.333893	1120.65323	0.20171	0.00011322	0.15771	8.8526E-05	0.35941	0.00020175	561.333837603596	73.815	0.77026	73.815	73.63	74.4	0					63	27	4	0	0	0	0.21218	1	17643	17643		32.305	1.6689	1	836800	+		12919	8422	8527	8590	17548	17548					0.09773247693669873
LYVLPLSIGF	10	Unmodified	_LYVLPLSIGF_					0	0	0			REV__ENSG00000101337|ENST00000398022|TM9SF4	REV__ENSG00000101337|ENST00000398022|TM9SF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3165893554688	2	561.333893	1120.65323	0.45592	0.00025592	0.020172	1.1323E-05	0.47609	0.00026724	561.33382710957	73.766	0.75502	73.818	73.591	74.346	0.052567					55	27	4	0	0	0	0.21218	1	17471	17471		32.305	3.2239	1	798360	+		12920	8422	8527	8590	17549	17549					0.09773247693669873
LYVLQTLPNG	10	Unmodified	_LYVLQTLPNG_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.318115234375	2	559.316232	1116.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.743	1	99.743	99.243	100.24	0								0	0	0	0.24021	1	25466	25466		24.991	0	1				12921	2025	8528	8591	17550	17550					0.06426585165854704
LYVLQVLTF	9	Unmodified	_LYVLQVLTF_					0	0	0		ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3265380859375	2	548.326068	1094.63758	0.50818	0.00027865	0.31045	0.00017023	0.81863	0.00044888	548.3261295408466	99.782	0.75967	99.782	99.604	100.36	0					96	42	3	0	0	0	9.8596E-13	6	25483	25442;25483;25526;25569;25613;25636		181.33	73.33	1	1775100			12922	655	8529	8592	17551;17552;17553;17554;17555;17556	17552					0.09404961176596771
LYVLQVLTF	9	Unmodified	_LYVLQVLTF_					0	0	0		ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3252563476562	2	548.326068	1094.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.89	1	100.89	100.39	101.39	0								0	0	0	0.28631	1	25817	25817		1.8442	0	1				12923	655	8529	8592	17557	17557					0.09404961176596771
LYVLQVLTF	9	Unmodified	_LYVLQVLTF_					0	0	0		ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3267822265625	2	548.326068	1094.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.22	1	101.22	100.72	101.72	0								0	0	0	0.26517	1	25918	25918		6.2058	1.8765	1				12924	655	8529	8592	17558	17558					0.09404961176596771
LYVLQVLTF	9	Unmodified	_LYVLQVLTF_					0	0	0		ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3265991210938	2	548.326068	1094.63758	0.57285	0.00031411	0.4614	0.000253	1.0343	0.00056711	548.3262127332566	99.777	0.98891	99.82	99.534	100.52	0.042839					125	59	3	0	0	0	9.8596E-13	6	25305	25268;25305;25344;25388;25438;25465		181.33	65.635	1	3419400			12925	655	8529	8592	17559;17560;17561;17562;17563;17564	17560					0.09404961176596771
LYVLQVLTF	9	Unmodified	_LYVLQVLTF_					0	0	0		ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7764282226562	2	548.326068	1094.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.87	1	100.91	100.41	101.41	0.042839								0	0	0	0.24643	1	25656	25656		10.074	0	1				12926	655	8529	8592	17565	17565					0.09404961176596771
LYVLYDDATH	10	Unmodified	_LYVLYDDATH_					0	0	0		ENST00000521903.5_1_8:124359502-124368686:-|nuORF	ENST00000521903.5_1_8:124359502-124368686:-|nuORF	ENST00000521903.5_1_8:124359502-124368686:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.30078125	2	605.292953	1208.57135	0.74312	0.00044981	-4.0375	-0.0024439	-3.2944	-0.0019941	605.289873378415	78.461	2.1747	78.491	78.051	80.226	0.030159					151	76	3	0	0	0	0.45239	1	19124	19124		4.3292	2.0265	1	2420100			12927	6963	8530	8593	17566	17566					-0.02458899456087238
LYVLYFDF	8	Unmodified	_LYVLYFDF_					0	0	0		UGT2B10|p.W222S|1|0.22|ENSG00000109181|chr4:68816684-68816684|G/C|missense_variant;ENSG00000109181|ENST00000265403|UGT2B10	UGT2B10|p.W222S|1|0.22|ENSG00000109181|chr4:68816684-68816684|G/C|missense_variant	UGT2B10|p.W222S|1|0.22|ENSG00000109181|chr4:68816684-68816684|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.29248046875	2	540.276044	1078.53753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.634	1	92.634	92.134	93.134	0								0	0	0	0.38643	1	23305	23305		17.087	0	1				12928	1629	8531	8594	17567	17567					0.0014072384281007544
LYVLYFDF	8	Unmodified	_LYVLYFDF_					0	0	0		UGT2B10|p.W222S|1|0.22|ENSG00000109181|chr4:68816684-68816684|G/C|missense_variant;ENSG00000109181|ENST00000265403|UGT2B10	UGT2B10|p.W222S|1|0.22|ENSG00000109181|chr4:68816684-68816684|G/C|missense_variant	UGT2B10|p.W222S|1|0.22|ENSG00000109181|chr4:68816684-68816684|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.77587890625	2	540.276044	1078.53753	0.42101	0.00022746	1.2391	0.00066944	1.6601	0.00089691	540.2768091715225	91.579	1.0285	91.614	91.225	92.253	0.035446					60	28	3	0	0	0	0.51202	1	22891	22891		11.114	0	1	293700			12929	1629	8531	8594	17568	17568					0.0014072384281007544
LYVMVNAKF	9	Oxidation (M)	_LYVM(Oxidation (M))VNAKF_		LYVM(1)VNAKF		LYVM(120)VNAKF	0	0	1		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7943725585938	2	550.794078	1099.5736	0.44039	0.00024257	0.20784	0.00011448	0.64823	0.00035704	550.7940820593869	56.006	0.62992	56.006	55.749	56.379	0					56	22	3	0	0	0	0.0012363	1	12166	12166		120.45	76.592	1	636770			12930	802	8532	8595	17569	17569		45			0.027798577480098174
LYVMVNAKF	9	Oxidation (M)	_LYVM(Oxidation (M))VNAKF_		LYVM(1)VNAKF		LYVM(120)VNAKF	0	0	1		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.794189453125	2	550.794078	1099.5736	0.30826	0.00016979	-0.99285	-0.00054686	-0.68458	-0.00037707	550.7939753641564	56.761	1.3556	56.761	56.355	57.71	0					152	49	6	0	0	0	1.602E-05	1	12387	12387		120.45	68.182	1	905930			12931	802	8532	8595	17570	17570		45			0.027798577480098174
LYVMVNAKF	9	Oxidation (M)	_LYVM(Oxidation (M))VNAKF_		LYVM(1)VNAKF		LYVM(110)VNAKF	0	0	1		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.794189453125	2	550.794078	1099.5736	0.40292	0.00022192	-0.089038	-4.9041E-05	0.31388	0.00017288	550.793944483394	55.95	0.65654	56.015	55.73	56.387	0.065128					52	24	3	0	0	0	0.0032694	1	12008	12008		108	68.047	1	564350			12932	802	8532	8595	17571	17571		45			0.027798577480098174
LYVMVNAKF	9	Oxidation (M)	_LYVM(Oxidation (M))VNAKF_		LYVM(1)VNAKF		LYVM(96)VNAKF	0	0	1		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7940673828125	2	550.794078	1099.5736	0.44623	0.00024578	-0.15045	-8.2865E-05	0.29578	0.00016291	550.7938522046751	56.703	1.387	56.77	56.28	57.667	0.066452					118	51	3	0	0	0	0.0043613	2	12168	12168;12262		96.285	67.203	1	644770			12933	802	8532	8595	17572;17573	17572		45			0.027798577480098174
LYVNQDSHPF	10	Unmodified	_LYVNQDSHPF_					0	0	0		ENST00000309890.11_1_17:3827212-3827491:-|nuORF	ENST00000309890.11_1_17:3827212-3827491:-|nuORF	ENST00000309890.11_1_17:3827212-3827491:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.2924194335938	2	610.290745	1218.56694	0.48637	0.00029683	1.1016	0.00067227	1.5879	0.0009691	610.2914057336715	93.729	0.4572	93.729	93.506	93.963	0					50	19	5	0	0	0	0.24016	1	23617	23617		29.082	2.8134	1	1834300			12934	5994	8533	8596	17574	17574					-0.0336036387900549
LYVNVDVLE	9	Unmodified	_LYVNVDVLE_					0	0	0			REV__PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	REV__PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2719116210938	2	532.28714	1062.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.265	1	75.265	74.765	75.765	0								0	0	0	0.090696	1	18014	18014		36.127	4.8587	1		+		12935	10962	8534	8597	17575	17575					0.03094903520582193
LYVPALSALW	10	Unmodified	_LYVPALSALW_					0	0	0		ENST00000471281.5_1_7:2834552-2834702:-|nuORF;nc|ENSG00000146535|Q03113-3|GNA12;nc|ENSG00000146535|Q03113-2|GNA12;ENSG00000146535|ENST00000275364|GNA12	ENST00000471281.5_1_7:2834552-2834702:-|nuORF	ENST00000471281.5_1_7:2834552-2834702:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8233032226562	2	566.823692	1131.63283	0.46941	0.00026607	-0.31291	-0.00017737	0.15649	8.8704E-05	566.8232965347745	99.298	0.55517	99.341	99.014	99.57	0.042831					34	25	2	0	0	0	0.3198	2	25160	25160;25208		20.454	11.071	1	106590			12936	3292	8535	8598	17576;17577	17576					0.07228077033846603
LYVQVLNI	8	Unmodified	_LYVQVLNI_					0	0	0		nc|ENSG00000071991|Q9H159-2|CDH19;ENSG00000071991|ENST00000262150|CDH19	nc|ENSG00000071991|Q9H159-2|CDH19	nc|ENSG00000071991|Q9H159-2|CDH19	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.289794921875	2	481.289485	960.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.141	1	57.141	56.641	57.641	0								0	0	0	0.38822	1	12491	12491		5.7604	0	1				12937	777	8536	8599	17578	17578					0.08255832453994572
LYVRRTIE	8	Unmodified	_LYVRRTIE_					0	0	0			REV__NMT1|p.H272Y|1|0.09|ENSG00000136448|chr17:45098482-45098482|C/T|missense_variant	REV__NMT1|p.H272Y|1|0.09|ENSG00000136448|chr17:45098482-45098482|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3101806640625	2	525.308741	1048.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.488	1	98.53	98.03	99.03	0.041931								0	0	0	0.38822	1	24932	24932		2.8892	0	1		+		12938	12934	8537	8600	17579	17579					0.0805713808854307
LYVSRQHDCK	10	Unmodified	_LYVSRQHDCK_					0	0	0			REV__ENSG00000163898|ENST00000296252|LIPH	REV__ENSG00000163898|ENST00000296252|LIPH	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.3034057617188	2	624.811322	1247.60809	0.35425	0.00022134	1.815	0.001134	2.1692	0.0013554	624.8121893118157	79.865	0.59996	79.891	79.622	80.222	0.026436					32	20	2	0	0	0	0.31643	1	19343	19343		9.3831	0	1	155930	+		12939	9960	8538	8601	17580	17580					-0.00580926111183544
LYVSTLLG	8	Unmodified	_LYVSTLLG_					0	0	0			REV__DPY19L3|p.G455Afs*5|1|0.45|ENSG00000178904|chr19:32463401-32463401|A/-|frameshift_variant	REV__DPY19L3|p.G455Afs*5|1|0.45|ENSG00000178904|chr19:32463401-32463401|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.9167175292969	2	433.255111	864.49567	0.5827	0.00025246	2.2211	0.00096229	2.8038	0.0012148	433.25602592969227	57.807	0.69798	57.807	57.329	58.027	0					26	24	2	0	0	0	0.3576	1	12689	12689		2.3027	0	1	69830	+		12940	7900	8539	8602	17581	17581					0.058001681543032646
LYVTPQLLF	9	Unmodified	_LYVTPQLLF_					0	0	0			REV__ENSG00000122584|ENST00000405863|NXPH1	REV__ENSG00000122584|ENST00000405863|NXPH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.783447265625	2	547.318243	1092.62193	0.40099	0.00021947	-0.15325	-8.3874E-05	0.24774	0.0001356	547.3181261205423	94.638	0.46783	94.638	94.451	94.919	0					28	18	2	0	0	0	0.20004	1	23927	23927		23.148	5.0134	1	109140	+		12941	8919	8540	8603	17582	17582					0.07932674659582517
LYVTPTPLQ	9	Unmodified	_LYVTPTPLQ_					0	0	0		ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;ENSG00000169169|ENST00000598293|CPT1C;ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000599023.5_1_19:50195509-50213852:+|nuORF	ENST00000599023.5_1_19:50195509-50213852:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2739868164062	2	516.292225	1030.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.556	1	66.556	66.056	67.056	0								0	0	0	0.22979	1	15360	15360		13.508	1.8676	1				12942	4326	8541	8604	17583	17583					0.05583511245822592
LYVVHPYVQF	10	Unmodified	_LYVVHPYVQF_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.2292785644531	3	422.229008	1263.66519	0.53666	0.00022659	-0.091792	-3.8757E-05	0.44487	0.00018784	422.2288532335511	62.265	0.81567	62.265	62.067	62.883	0					46	29	3	0	0	0	0.40987	1	14083	14083		6.1918	0	1	197670			12943	4227	8542	8605	17584	17584					0.04390864436845732
LYVVHPYVQF	10	Unmodified	_LYVVHPYVQF_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.5632629394531	3	422.229008	1263.66519	0.16845	7.1125E-05	0.16554	6.9894E-05	0.33399	0.00014102	422.2289666169355	62.136	0.60344	62.21	62.029	62.632	0.073421					39	20	3	0	0	0	0.40987	2	13919	13919;13962		6.1918	0	1	313160			12944	4227	8542	8605	17585;17586	17585					0.04390864436845732
LYVWAQLN	8	Unmodified	_LYVWAQLN_					0	0	0		ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	ENSG00000136986|ENST00000259512|DERL1	ENSG00000136986|ENST00000259512|DERL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.75823974609375	2	503.77146	1005.52837	0.40588	0.00020447	0.32793	0.0001652	0.73381	0.00036967	503.7715220892757	77.83	0.67245	77.864	77.649	78.321	0.034485					64	22	4	0	0	0	0.39998	1	18754	18754		26.341	12.833	1	693580			12945	2825	8543	8606	17587	17587					0.02582375277143001
LYVWIFLL	8	Unmodified	_LYVWIFLL_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2947998046875	2	533.820421	1065.62629	0.67859	0.00036225	-3.16	-0.0016869	-2.4814	-0.0013246	533.8192423137176	83.911	0.3302	83.911	83.749	84.079	0					12	10	2	0	0	0	0.35759	1	20612	20612		11.114	3.2043	1	32568			12946	5276	8544	8607	17588	17588					0.09610183873132883
LYVWNNYFV	9	Unmodified	_LYVWNNYFV_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.3029174804688	2	609.303124	1216.5917	0.10699	6.5188E-05	-0.046568	-2.8374E-05	0.060419	3.6814E-05	609.3028130959739	73.021	1.3011	73.021	72.556	73.857	0					94	46	3	0	0	0	0.28587	1	17236	17236		8.5933	1.304	1	479680			12947	779	8545	8608	17589	17589					-0.007936840056572692
LYVWNNYFV	9	Unmodified	_LYVWNNYFV_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3043212890625	2	609.303124	1216.5917	0.32479	0.0001979	-0.4007	-0.00024415	-0.075906	-4.625E-05	609.3026611531483	72.952	1.1877	73.004	72.535	73.723	0.052567					85	43	3	0	0	0	0.28587	1	17050	17050		8.5933	1.304	1	353160			12948	779	8545	8608	17590	17590					-0.007936840056572692
LYWEPAEVF	9	Unmodified	_LYWEPAEVF_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.28076171875	2	577.281857	1152.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.911	1	79.911	79.411	80.411	0								0	0	0	0.16627	1	19436	19436		23.148	0.41214	1				12949	3235	8546	8609	17591	17591					-0.021010791338767376
LYWGIAEDHL	10	Unmodified	_LYWGIAEDHL_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.2043762207031	3	406.204751	1215.59242	-0.30427	-0.0001236	0.6655	0.00027033	0.36123	0.00014673	406.2051305667754	27.12	0.40325	27.207	27.029	27.432	0.0867					68	27	3	0	0	0	0.45443	1	3322	3322		1.9064	0.31409	1	72166			12950	495	8547	8610	17592	17592					-0.0067488935658275295
LYWGIAEDHL	10	Unmodified	_LYWGIAEDHL_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	406.204751	1215.59242	0.044411	1.804E-05	0.18522	7.5238E-05	0.22963	9.3278E-05	406.2048836752888	27.26	0.38098	27.26	27.072	27.453	0	0.026554	-0.00034823	NaN	1.9064	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39062			12951	495	8547	8610							-0.0067488935658275295
LYWHRAVFP	9	Unmodified	_LYWHRAVFP_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.8063354492188	2	594.819276	1187.624	0.23606	0.00014041	-2.1654	-0.001288	-1.9294	-0.0011476	595.3198151780756	77.85	0.27316	77.85	77.685	77.958	0					10	8	2	0	0	0	0.20367	1	18777	18777		18.135	3.2967	1	61841			12952	2764	8548	8611	17593	17593					0.03769148188030158
LYWIPVVFI	9	Unmodified	_LYWIPVVFI_					0	0	0		ENSG00000104219|ENST00000262096|ZDHHC2	ENSG00000104219|ENST00000262096|ZDHHC2	ENSG00000104219|ENST00000262096|ZDHHC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7842407226562	2	575.338978	1148.6634	-0.063512	-3.6541E-05	-1.7441	-0.0010034	-1.8076	-0.00104	575.3377959616033	58.524	0.40488	58.524	58.357	58.762	0					15	13	2	0	0	0	0.24749	1	12913	12913		5.2307	0.90143	1	99969			12953	1402	8549	8612	17594	17594					0.09501855418898231
LYWMFMQL	8	Unmodified	_LYWMFMQL_					0	0	0			REV__DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	REV__DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2861938476562	2	566.271924	1130.52929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.657	1	72.657	72.157	73.157	0								0	0	0	0.38796	1	17216	17216		14.582	1.0738	1		+		12954	7879	8550	8613	17595	17595					-0.030748696698310596
LYWNKGKYN	9	Unmodified	_LYWNKGKYN_					0	0	0		tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.7473754882812	2	593.306198	1184.59784	0.67453	0.0004002	1.4677	0.00087081	2.1422	0.001271	593.3064546954006	82.007	1.048	82.007	81.461	82.509	0					47	36	2	0	0	0	0.25051	1	20114	20114		7.9102	0.62092	1	78562			12955	13540	8551	8614	17596	17596					0.012928342259101555
LYWRSLATL	9	Unmodified	_LYWRSLATL_					0	0	0			REV__ENSG00000198133|ENST00000554480|TMEM229B	REV__ENSG00000198133|ENST00000554480|TMEM229B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8192749023438	2	561.818941	1121.62333	0.54797	0.00030786	0.034883	1.9598E-05	0.58285	0.00032746	561.8188677272005	69.483	1.5175	69.483	69.269	70.786	0					125	54	4	0	0	0	0.074645	2	16378	16378;16444		37.974	3.0419	1	2840300	+		12956	10885	8552	8615	17597;17598	17597					0.06738308748322197
LYWRSLATL	9	Unmodified	_LYWRSLATL_					0	0	0			REV__ENSG00000198133|ENST00000554480|TMEM229B	REV__ENSG00000198133|ENST00000554480|TMEM229B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.818603515625	2	561.818941	1121.62333	0.53472	0.00030042	-0.90803	-0.00051015	-0.37331	-0.00020973	561.8184763043583	70.133	0.77551	70.193	69.915	70.691	0.060562					44	32	2	0	0	0	0.12809	1	16245	16245		26.884	1.8927	1	133370	+		12957	10885	8552	8615	17599	17599					0.06738308748322197
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.8891296386719	3	411.889097	1232.64546	0.022535	9.282E-06	0.011157	4.5956E-06	0.033693	1.3878E-05	411.8890710988984	36.008	2.6968	36.089	35.627	38.324	0.080994					259	102	4	0	0	0	0.088609	2	5991	5955;5991		27.088	27.088	1	697240			12958	5555	8553	8616	17600;17601	17601					0.03844533216738455
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.3294067382812	2	617.330008	1232.64546	-0.25632	-0.00015823	0.58655	0.00036209	0.33023	0.00020386	617.3300708287493	35.97	0.55361	36.049	35.899	36.452	0.078831					29	21	2	0	0	0	0.32112	2	6016	5961;6016		3.9444	1.8846	1	37962			12959	5555	8553	8616	17602;17603	17603					0.03844533216738455
LYWTVTTLL	9	Unmodified	_LYWTVTTLL_					0	0	0		ENST00000545737.5_1_12:28410092-28458713:+|nuORF;ENST00000539107.5_2_12:28343406-28458716:+|nuORF	ENST00000545737.5_1_12:28410092-28458713:+|nuORF	ENST00000545737.5_1_12:28410092-28458713:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2449340820312	2	555.3157	1108.61685	0.63968	0.00035522	-0.48317	-0.00026831	0.15651	8.6913E-05	555.315313544774	68.993	0.60416	68.993	68.692	69.296	0					35	22	2	0	0	0	0.24263	1	16145	16145		12.532	0.89125	1	238880			12960	7054	8554	8617	17604	17604					0.06688370796950949
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.2957153320312	2	614.295299	1226.57605	0.44969	0.00027625	-0.2817	-0.00017305	0.16799	0.0001032	614.2955717421667	80.181	4.9311	80.181	79.311	84.242	0					482	171	4	0	0	0	1.1297E-12	18	19493	19493;19538;19583;19625;19665;19708;19781;19826;19915;20043;20092;20131;20244;20252;20410;20473;20524;20568		179.23	150.15	1	48518000			12961	4072	8555	8618	17605;17606;17607;17608;17609;17610;17611;17612;17613;17614;17615;17616;17617;17618;17619;17620;17621;17622	17605					-0.02817970522687574
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.2955932617188	2	614.295299	1226.57605	0.27898	0.00017138	-0.071491	-4.3917E-05	0.20749	0.00012746	614.2957107539625	80.207	5.0341	80.23	79.302	84.336	0.023605					587	181	4	0	0	0	8.2367E-09	9	19332	19332;19376;19425;19471;19517;19622;19665;19716;20449		161.89	135.63	1	34763000			12962	4072	8555	8618	17623;17624;17625;17626;17627;17628;17629;17630;17631	17623					-0.02817970522687574
LYYDRVHVVF	10	Unmodified	_LYYDRVHVVF_					0	0	0		ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENST00000472127.1_1_3:42672642-42674322:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.56805419921875	3	437.567912	1309.68191	0.54828	0.00023991	-0.63457	-0.00027767	-0.086285	-3.7755E-05	437.56760573753496	62.59	0.49094	62.59	62.421	62.912	0					38	17	3	0	0	0	0.3186	1	14191	14191		20.581	12.636	1	202920			12963	6680	8556	8619	17632	17632					0.039453653227838004
LYYDRVHVVF	10	Unmodified	_LYYDRVHVVF_					0	0	0		ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENST00000472127.1_1_3:42672642-42674322:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5679626464844	3	437.567912	1309.68191	0.22447	9.822E-05	-0.2494	-0.00010913	-0.024931	-1.0909E-05	437.56773755419573	62.498	0.54342	62.571	62.363	62.906	0.072701					36	18	3	0	0	0	0.3639	2	14029	13969;14029		15.739	10.691	1	195200			12964	6680	8556	8619	17633;17634	17634					0.039453653227838004
LYYECYSDV	9	Unmodified	_LYYECYSDV_					0	0	0		ENSG00000198890|ENST00000370078|PRMT6	ENSG00000198890|ENST00000370078|PRMT6	ENSG00000198890|ENST00000370078|PRMT6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2296752929688	2	577.739165	1153.46378	0.61696	0.00035644	-4.16	-0.0024034	-3.543	-0.0020469	578.2383280668837	65.959	0.13888	66.026	65.916	66.055	0.066872					6	4	2	0	0	0	0.25504	1	15008	15008		4.756	0	1	69365			12965	5428	8557	8620	17635	17635					-0.10681612381836203
LYYENFIYI	9	Unmodified	_LYYENFIYI_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8694458007812	2	619.310615	1236.60668	-0.12922	-8.0029E-05	0.9199	0.00056971	0.79068	0.00048968	619.3111171267594	90.769	0.45187	90.769	90.549	91.001	0					29	16	3	0	0	0	0.11896	1	22724	22724		39.957	18.211	1	133960			12966	568	8558	8621	17636	17636					-0.002162369282814325
LYYENFIYI	9	Unmodified	_LYYENFIYI_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8695068359375	2	619.310615	1236.60668	-0.32759	-0.00020288	0.87396	0.00054125	0.54636	0.00033837	619.3111488142586	90.685	0.41117	90.721	90.555	90.966	0.035446					24	16	2	0	0	0	0.14331	1	22575	22575		29.082	13.234	1	183430			12967	568	8558	8621	17637	17637					-0.002162369282814325
LYYPFSYLF	9	Unmodified	_LYYPFSYLF_					0	0	0		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8029174804688	2	606.802426	1211.5903	0.5193	0.00031511	0.50554	0.00030676	1.0248	0.00062188	606.8027517176107	103.07	0.63206	103.07	102.81	103.44	0					99	41	3	0	0	0	0.0065046	3	26479	26479;26521;26569		77.984	47.76	1	426830			12968	847	8559	8622	17638;17639;17640	17638					-0.007033180944063133
LYYPFSYLF	9	Unmodified	_LYYPFSYLF_					0	0	0		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8038940429688	2	606.802426	1211.5903	0.79635	0.00048323	0.11282	6.8461E-05	0.90918	0.00055169	606.8024806571566	103	0.55046	103.04	102.82	103.37	0.040909					109	49	3	0	0	0	0.030375	3	26258	26258;26297;26334		50.855	27.707	1	328000			12969	847	8559	8622	17641;17642;17643	17641					-0.007033180944063133
LYYPLLLEH	9	Unmodified	_LYYPLLLEH_					0	0	0		ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3059692382812	2	580.82115	1159.62775	0.081878	4.7557E-05	1.9537	0.0011348	2.0356	0.0011823	580.8219827773987	106.77	0.32275	106.77	106.59	106.91	0					54	30	3	0	0	0	0.21398	3	27502	27502;27531;27574		16.942	6.8684	1	78053			12970	3808	8560	8623	17644;17645;17646	17644					0.05431773171221721
LYYPLLLEH	9	Unmodified	_LYYPLLLEH_					0	0	0		ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.8224487304688	2	580.82115	1159.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.83	1	106.86	106.36	107.36	0.025711								0	0	0	0.23884	1	27360	27360		11.64	1.5664	1				12971	3808	8560	8623	17647	17647					0.05431773171221721
LYYPLLLEH	9	Unmodified	_LYYPLLLEH_					0	0	0		ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.32421875	2	580.82115	1159.62775	0.47362	0.00027509	1.6019	0.00093041	2.0755	0.0012055	580.8217401924863	106.67	0.23765	106.69	106.57	106.81	0.025711					43	23	3	0	0	0	0.20845	1	27308	27308		21.747	3.6117	1	76818			12972	3808	8560	8623	17648	17648					0.05431773171221721
LYYQMTIVL	9	Unmodified	_LYYQMTIVL_					0	0	0			REV__SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	REV__SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3079223632812	2	572.309561	1142.60457	0.38963	0.00022299	-2.3882	-0.0013668	-1.9985	-0.0011438	572.3076964558029	96.469	0.45245	96.509	96.293	96.745	0.039772					73	22	4	0	0	0	0.16392	2	24321	24321;24353		22.736	2.3147	1	544150	+		12973	12987	8561	8624	17649;17650	17649					0.03897011062258571
LYYQTKKY	8	Unmodified	_LYYQTKKY_					0	0	0		NCF2|p.E85K|1|0.06|ENSG00000116701|chr1:183586899-183586899|C/T|missense_variant	NCF2|p.E85K|1|0.06|ENSG00000116701|chr1:183586899-183586899|C/T|missense_variant	NCF2|p.E85K|1|0.06|ENSG00000116701|chr1:183586899-183586899|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8082885742188	2	553.797675	1105.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.473	1	30.473	29.973	30.973	0								0	0	0	0.38822	1	4437	4437		2.3027	0	1				12974	7644	8562	8625	17651	17651					0.03222913620106738
LYYQYLEA	8	Unmodified	_LYYQYLEA_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2615356445312	2	531.760758	1061.50696	0.049955	2.6564E-05	-0.80417	-0.00042763	-0.75422	-0.00040106	531.7602830757179	31.883	1.0404	31.957	31.634	32.674	0.07378					91	51	2	0	0	0	0.53894	1	4872	4872		2.0598	0	1	53851	+		12975	8324;9384	8563	8626	17652	17652					-0.021330545422415526
LYYSFFFPL	9	Unmodified	_LYYSFFFPL_					0	0	0		ENST00000367866.6_1_1:167388477-167388615:+|nuORF	ENST00000367866.6_1_1:167388477-167388615:+|nuORF	ENST00000367866.6_1_1:167388477-167388615:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8047485351562	2	598.804968	1195.59538	0.10445	6.2545E-05	0.10157	6.0822E-05	0.20602	0.00012337	598.8048914740456	104.72	0.61692	104.72	104.51	105.13	0					146	58	4	0	0	0	0.28587	1	27044	27044		8.5933	0	1	477340			12976	6180	8564	8627	17653	17653					0.005409857682479924
LYYTNKQHK	9	Unmodified	_LYYTNKQHK_					0	0	0			REV__ENST00000281182.8_1_11:134134959-134135112:+|nuORF	REV__ENST00000281182.8_1_11:134134959-134135112:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.813720703125	2	597.81693	1193.61931	-0.11528	-6.8915E-05	-2.8666	-0.0017137	-2.9818	-0.0017826	597.8147320246895	39.536	1.838	39.536	39.237	41.075	0					114	65	3	0	0	0	0.3354	1	7516	7516		2.0598	0.21551	1	165870	+		12977	11297	8565	8628	17654	17654					0.030242192545983926
LYYVTELTH	9	Unmodified	_LYYVTELTH_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2559204101562	2	569.792589	1137.57063	0.32742	0.00018656	1.3781	0.00078522	1.7055	0.00097178	569.7938214720183	96.447	0.37538	96.447	96.257	96.632	0					25	17	2	0	0	0	0.24263	1	24425	24425		12.532	0	1	129120			12978	1994	8566	8629	17655	17655					0.00734305894843601
LYYYDGLANQ	10	Unmodified	_LYYYDGLANQ_					0	0	0		ENST00000409881.1_1_7:30898614-30931617:+|nuORF;ENSG00000106125|ENST00000265299|MINDY4	ENST00000409881.1_1_7:30898614-30931617:+|nuORF	ENST00000409881.1_1_7:30898614-30931617:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.2039489746094	3	407.192511	1218.5557	0.23427	9.5391E-05	0.32052	0.00013051	0.55479	0.0002259	407.19262571509023	93.784	0.34209	93.822	93.534	93.876	0.037369					18	12	2	0	0	0	0.43061	1	23495	23495		8.4443	0	1	77588			12979	1507	8567	8630	17656	17656					-0.044831859731630175
LYYYSDSDKG	10	Unmodified	_LYYYSDSDKG_					0	0	0		nc|ENSG00000211654|A0A075B6J1|IGLV5-37	nc|ENSG00000211654|A0A075B6J1|IGLV5-37	nc|ENSG00000211654|A0A075B6J1|IGLV5-37	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3694458007812	2	605.766768	1209.51898	0.59439	0.00036006	0.48175	0.00029183	1.0761	0.00065189	605.7669032605835	85.964	0.50776	85.964	85.806	86.313	0					32	19	2	0	0	0	0.31783	1	21360	21360		3.9444	0.66309	1	149100			12980	7595	8568	8631	17657	17657					-0.07739482589727231
MAAASPPAPP	10	Unmodified	_MAAASPPAPP_					0	0	0			REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.22833251953125	2	455.228571	908.442588	-0.044599	-2.0303E-05	0.087049	3.9627E-05	0.042449	1.9324E-05	455.22846987257924	34.098	0.44957	34.174	34.04	34.489	0.076244					31	17	3	0	0	0	0.33099	1	5410	5410		19.257	2.1441	1	45132	+		12981	10070	8569	8632	17658	17658					-0.015295329000309721
MAARDGDFLMN	11	Unmodified	_MAARDGDFLMN_					0	0	0			REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.776611328125	2	620.77609	1239.53763	-0.43958	-0.00027288	0.95614	0.00059355	0.51657	0.00032067	620.7770007742482	107.06	0.44765	107.06	106.84	107.28	0					57	42	2	0	0	0	0.4147	1	27615	27615		0.96228	0	1	121260	+		12982	13004	8570	8633	17659	17659					-0.07255967491164483
MACVADSF	8	Unmodified	_MACVADSF_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1723327636719	2	422.172407	842.330261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.218	1	75.262	74.762	75.762	0.044037								0	0	0	0.38822	1	17843	17843		2.8892	0	1				12983	3224	8571	8634	17660	17660					-0.09721129968534115
MADAASPCSVV	11	Unmodified	_MADAASPCSVV_					0	0	0		ENSG00000172009|ENST00000307741|THOP1;THOP1|p.E107Sfs*8|1|0.04|ENSG00000172009|chr19:2794846-2794847|-/CTCTC|frameshift_variant	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7318115234375	2	525.73336	1049.45217	0.018374	9.6596E-06	-2.7885	-0.001466	-2.7702	-0.0014564	525.7316453326895	46.206	0.3512	46.206	46.069	46.42	0					20	11	2	0	0	0	0.35043	1	9205	9205		12.241	0.60036	1	45209			12984	4477	8572	8635	17661	17661					-0.07058132676820605
MADEFHSTL	9	Oxidation (M)	_M(Oxidation (M))ADEFHSTL_		M(1)ADEFHSTL		M(52)ADEFHSTL	0	0	1		ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7291259765625	2	533.729132	1065.44371	-0.2187	-0.00011672	1.1352	0.00060591	0.91654	0.00048918	533.7292932553385	40.487	0.84311	40.487	40.26	41.103	0					59	29	3	0	0	0	0.028398	1	7427	7427		52.268	28.248	1	127970			12985	6500	8573	8636	17662	17662		325			-0.08639363321776727
MADEFHSTL	9	Oxidation (M)	_M(Oxidation (M))ADEFHSTL_		M(1)ADEFHSTL		M(61)ADEFHSTL	0	0	1		ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7291870117188	2	533.729132	1065.44371	0.077466	4.1346E-05	0.30644	0.00016356	0.38391	0.0002049	533.7291033841535	40.388	0.55609	40.478	40.215	40.771	0.089645					40	20	3	0	0	0	0.015682	1	7276	7276		61.357	40.904	1	102450			12986	6500	8573	8636	17663	17663		325			-0.08639363321776727
MADEFHSTL	9	Unmodified	_MADEFHSTL_					0	0	0		ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7319946289062	2	525.731674	1049.4488	-0.039594	-2.0816E-05	0.44454	0.00023371	0.40495	0.00021289	525.7316863162731	46.14	0.3166	46.225	46.077	46.393	0.085617					18	10	2	0	0	0	0.11547	1	9027	9027		29.082	17.587	1	61877			12987	6500	8573	8637	17664	17664					-0.07395059459145159
MADEYEIIF	9	Unmodified	_MADEYEIIF_					0	0	0			REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7924194335938	2	565.757358	1129.50016	0.23437	0.00013259	0.040216	2.2753E-05	0.27458	0.00015535	565.7571262770106	95.111	0.50892	95.111	94.896	95.405	0					51	22	3	0	0	0	0.24263	1	24012	24012		12.532	0.89125	1	159470	+		12988	8317	8574	8638	17665	17665					-0.05940735485114601
MADGCAKQ	8	Unmodified	_MADGCAKQ_					0	0	0			REV__ENSG00000140835|ENST00000539698|CHST4	REV__ENSG00000140835|ENST00000539698|CHST4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.5184020996094	2	412.175481	822.336409	0.72981	0.00030081	-0.18879	-7.7813E-05	0.54102	0.000223	412.1754031003924	93.305	0.72054	93.305	93.101	93.822	0					53	27	3	0	0	0	0.3576	1	23640	23640		2.5775	0	1	104530	+		12989	9383	8575	8639	17666	17666					-0.08186611737005478
MADGCAKQ	8	Unmodified	_MADGCAKQ_					0	0	0			REV__ENSG00000140835|ENST00000539698|CHST4	REV__ENSG00000140835|ENST00000539698|CHST4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	412.175481	822.336409	0.33644	0.00013867	0.16786	6.9189E-05	0.5043	0.00020786	412.17546914506244	93.19	0.29877	93.228	92.972	93.271	0.037369	-0.038768	0.00021482	NaN	2.5775	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69829	+		12990	9383	8575	8639							-0.08186611737005478
MADIEYRL	8	Unmodified	_MADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2340393066406	2	505.75241	1009.49027	0.2423	0.00012254	-0.38318	-0.0001938	-0.14088	-7.1253E-05	505.75229496493847	53.486	0.29735	53.486	53.361	53.659	0					17	11	2	0	0	0	0.35471	1	11363	11363		18.146	3.3081	1	107160			12991	1705	8576	8640	17667	17667					-0.014098786998374635
MADIEYRL	8	Unmodified	_MADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.23406982421875	2	505.75241	1009.49027	0.36712	0.00018567	-0.44853	-0.00022684	-0.081404	-4.117E-05	505.75233152261774	53.519	0.27937	53.584	53.482	53.762	0.06543					17	13	2	0	0	0	0.35759	1	11251	11251		13.906	0.86358	1	92035			12992	1705	8576	8640	17668	17668					-0.014098786998374635
MADIEYRL	8	Oxidation (M)	_M(Oxidation (M))ADIEYRL_		M(1)ADIEYRL		M(52)ADIEYRL	0	0	1		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7496948242188	2	513.749867	1025.48518	0.37729	0.00019383	-0.082655	-4.2464E-05	0.29463	0.00015137	513.7496583144986	47.816	0.73089	47.816	47.64	48.371	0					31	24	2	0	0	0	0.28623	1	9648	9648		51.63	27.609	1	116940			12993	1705	8576	8641	17669	17669		102			-0.026541825624462945
MAEELNLYL	9	Unmodified	_MAEELNLYL_					0	0	0			REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E	REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2898559570312	2	548.273175	1094.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.071	1	98.113	97.613	98.613	0.041931								0	0	0	0.23452	1	24806	24806		12.532	2.3482	1		+		12994	10791	8577	8642	17670	17670					-0.011687427311926513
MAEERVVM	8	Unmodified	_MAEERVVM_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7223815917969	2	482.733163	963.451773	-0.53872	-0.00026006	-0.77005	-0.00037173	-1.3088	-0.00063178	482.73256706795854	42.246	0.22085	42.336	42.21	42.431	0.089764					9	7	2	0	0	0	0.53817	1	7848	7848		2.5775	0.27475	1	15156			12995	3402	8578	8643	17671	17671					-0.03141507606005689
MAEGKQHAL	9	Unmodified	_MAEGKQHAL_					0	0	0		ENST00000487133.1_1_X:119742243-119746116:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.75006103515625	2	492.750201	983.48585	-0.26461	-0.00013039	0.084477	4.1626E-05	-0.18013	-8.8761E-05	492.7502126872624	19.603	0.52419	19.603	19.433	19.958	0					105	60	3	0	0	0	0.065576	1	1385	1385		39.95	21.815	1	89298			12996	5620	8579	8644	17672	17672					-0.006553431227530382
MAEGKQHAL	9	Unmodified	_MAEGKQHAL_					0	0	0		ENST00000487133.1_1_X:119742243-119746116:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7500915527344	2	492.750201	983.48585	0.16519	8.1397E-05	-0.21671	-0.00010678	-0.051521	-2.5387E-05	492.75005249902154	19.53	0.39197	19.625	19.477	19.869	0.095234					101	46	3	0	0	0	0.029291	1	1308	1308		51.63	33.495	1	97672			12997	5620	8579	8644	17673	17673					-0.006553431227530382
MAETLFWTPL	10	Unmodified	_MAETLFWTPL_					0	0	0		nc|ENSG00000108823|Q16586-2|SGCA;ENSG00000108823|ENST00000262018|SGCA;SGCA|p.E96Rfs*9|1|0.38|ENSG00000108823|chr17:50167704-50167705|-/C|frameshift_variant	nc|ENSG00000108823|Q16586-2|SGCA	nc|ENSG00000108823|Q16586-2|SGCA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5375671386719	3	403.538854	1207.59473	0.24544	9.9043E-05	-2.9597	-0.0011944	-2.7143	-0.0010953	403.5376168792667	34.527	0.54652	34.527	34.337	34.884	0					43	21	3	0	0	0	0.45627	1	5659	5659		3.5871	2.1319	1	28900			12998	1608	8580	8645	17674	17674					-0.0007617694311647938
MAEVETNHF	9	Unmodified	_MAEVETNHF_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2371826171875	2	539.237124	1076.45969	0.60843	0.00032809	0.31876	0.00017189	0.92719	0.00049997	539.2371219764614	78.296	0.51326	78.326	78.138	78.651	0.030159					27	17	3	0	0	0	0.25979	1	18808	18808		11.64	1.4569	1	156340	+		12999	10909	8581	8646	17675	17675					-0.0754765708488776
MAFAWWPCLIL	11	Unmodified	_MAFAWWPCLIL_					0	0	0		ENSG00000162267|ENST00000449956|ITIH3	ENSG00000162267|ENST00000449956|ITIH3	ENSG00000162267|ENST00000449956|ITIH3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.8978576660156	3	450.896095	1349.66646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.596	1	52.663	52.163	53.163	0.067173								0	0	0	0.32679	1	10966	10966		5.4027	0.68679	1				13000	3817	8582	8647	17676	17676					0.005610392097423755
MAFMRFIL	8	Unmodified	_MAFMRFIL_					0	0	0			REV__ENST00000557444.5_1_16:90057772-90063225:+|nuORF	REV__ENST00000557444.5_1_16:90057772-90063225:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7744750976562	2	514.774634	1027.53471	0.41925	0.00021582	-0.6898	-0.00035509	-0.27055	-0.00013927	514.7744183391634	74.506	0.43083	74.506	74.287	74.718	0					34	15	3	0	0	0	0.3322	2	17816	17770;17816		32.117	9.3807	1	222820	+		13001	12465	8583	8648	17677;17678	17678					0.022048539126444666
MAFQDHPEKS	10	Unmodified	_MAFQDHPEKS_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.7980346679688	2	595.268955	1188.52336	0.19001	0.00011311	2.0185	0.0012016	2.2085	0.0013147	595.2699796430903	90.313	0.39651	90.313	90.231	90.628	0					28	14	2	0	0	0	0.30541	1	22627	22627		19.257	4.4187	1	153890			13002	605	8584	8649	17679	17679					-0.06336296647782547
MAFRKISLKT	10	Unmodified	_MAFRKISLKT_					0	0	0		ENSG00000164603|ENST00000297145|BMT2	ENSG00000164603|ENST00000297145|BMT2	ENSG00000164603|ENST00000297145|BMT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.856689453125	2	597.855001	1193.69545	0.19829	0.00011855	2.0881	0.0012484	2.2863	0.0013669	597.8561514598564	90.337	0.56506	90.337	90.118	90.683	0					40	22	2	0	0	0	0.46827	1	22707	22707		1.3295	0	1	161130			13003	4019	8585	8650	17680	17680					0.10634899830392897
MAFVTRQFM	9	Unmodified	_MAFVTRQFM_					0	0	0		ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-3|HADH;nc|ENSG00000138796|Q16836-2|HADH	ENSG00000138796|ENST00000309522|HADH	ENSG00000138796|ENST00000309522|HADH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7792358398438	2	565.777905	1129.54126	-0.17259	-9.7647E-05	2.1545	0.0012189	1.9819	0.0011213	565.7788065470965	31.471	0.46991	31.471	31.283	31.753	0					39	20	3	0	0	0	0.33849	1	4735	4735		1.6526	0.32309	1	37381			13004	2940	8586	8651	17681	17681					-0.018332529266217534
MAHRNSTHQN	10	Unmodified	_MAHRNSTHQN_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2910766601562	2	598.272895	1194.53124	0.24617	0.00014728	1.5089	0.00090275	1.7551	0.00105	598.2739276114269	38.075	1.5929	38.159	37.744	39.337	0.084476					123	59	3	0	0	0	0.46208	1	6869	6869		2.4985	1.0166	1	95082			13005	521	8587	8652	17682	17682					-0.058247246076462034
MAKCIQLSY	9	Unmodified	_MAKCIQLSY_					0	0	0			REV__ENST00000495097.1_1_8:27294989-27295398:+|nuORF	REV__ENST00000495097.1_1_8:27294989-27295398:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7828369140625	2	528.764463	1055.51437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.06	1	27.06	26.56	27.56	0								0	0	0	0.27935	1	3438	3438		3.2813	0.97858	1		+		13006	8890	8588	8653	17683	17683					-0.01116361537810917
MALFEQEVL	9	Unmodified	_MALFEQEVL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2761840820312	2	540.275718	1078.53688	0.86711	0.00046848	0.34744	0.00018772	1.2146	0.00065619	540.2758354970847	80.399	1.1477	80.399	80.169	81.317	0					56	24	3	0	0	0	0.1789	1	19575	19575		29.082	18.258	1	551520			13007	2334	8589	8654	17684	17684					0.0007556113146165444
MALFEQEVL	9	Unmodified	_MALFEQEVL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2762451171875	2	540.275718	1078.53688	0.80941	0.0004373	0.20708	0.00011188	1.0165	0.00054918	540.2758208553028	80.321	1.1475	80.345	79.988	81.136	0.023605					52	24	3	0	0	0	0.11174	1	19405	19405		43.772	22.026	1	500620			13008	2334	8589	8654	17685	17685					0.0007556113146165444
MALFEQEVL	9	Oxidation (M)	_M(Oxidation (M))ALFEQEVL_		M(1)ALFEQEVL		M(40)ALFEQEVL	0	0	1		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2730712890625	2	548.273175	1094.5318	0.45234	0.00024801	0.066828	3.664E-05	0.51917	0.00028465	548.2730056919853	73.826	1.4416	73.877	73.377	74.818	0.050713					102	53	3	0	0	0	0.064247	1	17470	17470		40.239	22.093	1	580320			13009	2334	8589	8655	17686	17686		149			-0.011687427311699139
MALFEQEVL	9	Oxidation (M)	_M(Oxidation (M))ALFEQEVL_		M(1)ALFEQEVL		M(44)ALFEQEVL	0	0	1		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2446899414062	2	548.273175	1094.5318	0.2165	0.0001187	-0.23067	-0.00012647	-0.014173	-7.7707E-06	548.2730855204295	72.386	0.68955	72.442	72.265	72.954	0.055931					70	23	6	0	0	0	0.11174	1	16983	16983		43.772	18.373	1	584790			13010	2334	8589	8655	17687	17687		149			-0.011687427311699139
MALFEQEVL	9	Oxidation (M)	_M(Oxidation (M))ALFEQEVL_					0	0	1		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	548.273175	1094.5318	0.25673	0.00014076	0.10976	6.0178E-05	0.36649	0.00020094	548.2730824079645	73.902	1.4195	73.902	73.464	74.884	0	0.012855	1.7151E-05	NaN	40.239	115	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	564400			13011	2334	8589	8655				149			-0.011687427311699139
MALFFWQHGE	10	Unmodified	_MALFFWQHGE_					0	0	0		nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.291748046875	2	633.292233	1264.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.475	1	67.475	66.975	67.975	0								0	0	0	0.33877	1	15641	15641		1.6526	0.32309	1				13012	927	8590	8656	17688	17688					-0.05178812025815205
MANVELSSL	9	Oxidation (M)	_M(Oxidation (M))ANVELSSL_		M(1)ANVELSSL		M(60)ANVELSSL	0	0	1		nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENSG00000143401|ENST00000583931|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2419738769531	2	490.241875	978.469197	0.43628	0.00021388	-0.12992	-6.3693E-05	0.30636	0.00015019	490.24176789192813	57.629	0.67508	57.629	57.378	58.053	0					34	23	2	0	0	0	0.017478	1	12645	12645		60.074	7.8056	1	380050			13013	3156	8591	8657	17689	17689		203			-0.020898887993325843
MANVELSSL	9	Oxidation (M)	_M(Oxidation (M))ANVELSSL_		M(1)ANVELSSL		M(58)ANVELSSL	0	0	1		nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENSG00000143401|ENST00000583931|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2419738769531	2	490.241875	978.469197	-0.13496	-6.6165E-05	0.21673	0.00010625	0.081768	4.0086E-05	490.2418351905943	58.721	0.77841	58.721	58.416	59.194	0					41	27	2	0	0	0	0.020768	2	12964	12964;13012		57.722	13.864	1	230390			13014	3156	8591	8657	17690;17691	17690		203			-0.020898887993325843
MANVELSSL	9	Oxidation (M)	_M(Oxidation (M))ANVELSSL_		M(1)ANVELSSL		M(52)ANVELSSL	0	0	1		nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENSG00000143401|ENST00000583931|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2421569824219	2	490.241875	978.469197	0.2892	0.00014178	0.21085	0.00010337	0.50005	0.00024514	490.24190526253733	57.607	0.45608	57.675	57.413	57.869	0.068375					33	16	3	0	0	0	0.029291	1	12493	12493		51.63	7.7715	1	222200			13015	3156	8591	8657	17692	17692		203			-0.020898887993325843
MANVELSSL	9	Oxidation (M)	_M(Oxidation (M))ANVELSSL_		M(1)ANVELSSL		M(44)ANVELSSL	0	0	1		nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENSG00000143401|ENST00000583931|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2420654296875	2	490.241875	978.469197	0.13319	6.5295E-05	0.053276	2.6118E-05	0.18647	9.1413E-05	490.2418093870954	58.712	1.1833	58.783	58.387	59.571	0.070477					50	43	2	0	0	0	0.048027	1	12838	12838		43.772	7.6454	1	181040			13016	3156	8591	8657	17693	17693		203			-0.020898887993325843
MAQYIQYAI	9	Unmodified	_MAQYIQYAI_					0	0	0			REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF	REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7960205078125	2	550.775885	1099.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.225	1	38.225	37.725	38.725	0								0	0	0	0.25692	1	6758	6758		7.9102	1.187	1		+		13017	11920	8592	8658	17694	17694					-0.008570191487024204
MAQYIQYAI	9	Unmodified	_MAQYIQYAI_					0	0	0			REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF	REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7957763671875	2	550.775885	1099.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.392	1	38.392	37.892	38.892	0								0	0	0	0.27427	1	6808	6808		4.3292	0.73274	1		+		13018	11920	8592	8658	17695	17695					-0.008570191487024204
MAQYIQYAI	9	Unmodified	_MAQYIQYAI_					0	0	0			REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF	REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7960815429688	2	550.775885	1099.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.078	1	38.162	37.662	38.662	0.084476								0	0	0	0.25692	1	6588	6588		7.9102	1.187	1		+		13019	11920	8592	8658	17696	17696					-0.008570191487024204
MARLTQAIK	9	Unmodified	_MARLTQAIK_					0	0	0			REV__VN1R4|p.L251Ifs*18|1|0.12|ENSG00000228567|chr19:53266915-53266916|-/AT|frameshift_variant	REV__VN1R4|p.L251Ifs*18|1|0.12|ENSG00000228567|chr19:53266915-53266916|-/AT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3042602539062	2	516.305144	1030.59573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.292	1	53.358	52.858	53.858	0.06543								0	0	0	0.28724	1	11179	11179		1.6526	0.17072	1		+		13020	11036	8593	8659	17697	17697					0.08166082216416726
MASAELDYTI	10	Unmodified	_MASAELDYTI_					0	0	0		ENST00000468117.1_1_1:45120771-45140129:-|nuORF;ENST00000495630.1_1_1:45102061-45140129:-|nuORF;ENST00000476724.1_1_1:45120771-45140087:-|nuORF;ENSG00000126106|ENST00000372237|TMEM53	ENST00000468117.1_1_1:45120771-45140129:-|nuORF	ENST00000468117.1_1_1:45120771-45140129:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2488403320312	2	557.260265	1112.50598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.456	1	56.456	55.956	56.956	0								0	0	0	0.32245	1	12282	12282		14.838	4.0143	1				13021	2328	8594	8660	17698	17698					-0.04577636973453991
MASDVWHTAL	10	Unmodified	_MASDVWHTAL_					0	0	0			REV__nc|ENSG00000044115|P35221-2|CTNNA1	REV__nc|ENSG00000044115|P35221-2|CTNNA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.76708984375	2	565.768591	1129.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.14	1	58.21	57.71	58.71	0.070477								0	0	0	0.2369	1	12656	12656		25.399	0	1		+		13022	12745	8595	8661	17699	17699					-0.036950912968677585
MASDVWHTAL	10	Unmodified	_MASDVWHTAL_					0	0	0			REV__nc|ENSG00000044115|P35221-2|CTNNA1	REV__nc|ENSG00000044115|P35221-2|CTNNA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.76708984375	2	565.768591	1129.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.346	1	58.417	57.917	58.917	0.070477								0	0	0	0.32245	1	12719	12719		14.838	0	1		+		13023	12745	8595	8661	17700	17700					-0.036950912968677585
MASKAIGRLAM	11	Unmodified	_MASKAIGRLAM_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3167724609375	2	574.817561	1147.62057	0.18275	0.00010505	-0.30548	-0.00017559	-0.12273	-7.0547E-05	574.8178020887452	53.004	0.51849	53.004	52.645	53.164	0					49	18	4	0	0	0	0.30989	1	11249	11249		10.074	0	1	358860			13024	5406	8596	8662	17701	17701					0.05266394027512433
MASRINTNFT	10	Unmodified	_MASRINTNFT_					0	0	0		ENSG00000204952|ENST00000378079|FBXO47	ENSG00000204952|ENST00000378079|FBXO47	ENSG00000204952|ENST00000378079|FBXO47	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.77685546875	2	577.784773	1153.55499	0.22747	0.00013143	0.96222	0.00055595	1.1897	0.00068738	577.785211526406	56.702	0.58289	56.702	56.512	57.095	0					41	21	3	0	0	0	0.41688	1	12350	12350		10.074	1.9184	1	179820			13025	5501	8597	8663	17702	17702					-0.015643038938378595
MATLHCQESEG	11	Unmodified	_MATLHCQESEG_					0	0	0		ENST00000531302.5_1_11:133938984-134014985:+|nuORF;nc|ENSG00000166086|Q9BX67-2|JAM3;ENSG00000166086|ENST00000299106|JAM3	ENST00000531302.5_1_11:133938984-134014985:+|nuORF	ENST00000531302.5_1_11:133938984-134014985:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.248046875	2	603.249905	1204.48526	0.5016	0.00030259	1.8378	0.0011087	2.3394	0.0014112	603.2486533199315	86.629	0.37484	86.657	86.434	86.808	0.027573					69	17	5	0	0	0	0.26943	1	21306	21306		21.537	2.28	1	617490			13026	4130	8598	8664	17703	17703					-0.10880550624756324
MAVEEREVI	9	Unmodified	_MAVEEREVI_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2474365234375	2	538.276249	1074.53795	-0.10712	-5.7661E-05	-0.52114	-0.00028052	-0.62827	-0.00033818	538.276034834894	44.443	0.288	44.443	44.243	44.531	0					12	9	2	0	0	0	0.24101	1	8602	8602		15.248	4.4246	1	37667			13027	4976	8599	8665	17704	17704					0.0036577550035872264
MAVIDGNVM	9	2 Oxidation (M)	_M(Oxidation (M))AVIDGNVM(Oxidation (M))_		M(1)AVIDGNVM(1)		M(75)AVIDGNVM(75)	0	0	2		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.22198486328125	2	491.222628	980.430703	-0.61175	-0.0003005	-0.28166	-0.00013836	-0.89341	-0.00043886	491.2224022445636	41.761	0.40636	41.761	41.594	42.001	0					26	14	2	0	0	0	0.0074933	1	7835	7835		74.929	40.527	1	144130			13028	2568	8600	8666	17705	17705		165;166			-0.06029517705519538
MAVIDGNVM	9	2 Oxidation (M)	_M(Oxidation (M))AVIDGNVM(Oxidation (M))_		M(1)AVIDGNVM(1)		M(75)AVIDGNVM(75)	0	0	2		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2220764160156	2	491.222628	980.430703	-0.50308	-0.00024712	-0.18311	-8.9946E-05	-0.68618	-0.00033707	491.22250203046224	42.16	0.51625	42.16	42.001	42.517	0					33	17	3	0	0	0	0.0074933	1	7945	7945		74.929	33.089	1	111460			13029	2568	8600	8666	17706	17706		165;166			-0.06029517705519538
MAVIDGNVM	9	2 Oxidation (M)	_M(Oxidation (M))AVIDGNVM(Oxidation (M))_		M(1)AVIDGNVM(1)		M(75)AVIDGNVM(75)	0	0	2		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.22216796875	2	491.222628	980.430703	-0.1589	-7.8057E-05	-0.73045	-0.00035882	-0.88936	-0.00043687	491.222149290346	44.175	2.2327	44.175	43.497	45.729	0					118	79	3	0	0	0	0.0074933	3	8512	8461;8512;8774		74.929	40.527	1	132050			13030	2568	8600	8666	17707;17708;17709	17708		165;166			-0.06029517705519538
MAVIDGNVM	9	2 Oxidation (M)	_M(Oxidation (M))AVIDGNVM(Oxidation (M))_		M(1)AVIDGNVM(1)		M(44)AVIDGNVM(44)	0	0	2		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2217102050781	2	491.222628	980.430703	-0.42375	-0.00020816	-0.46962	-0.00023069	-0.89337	-0.00043884	491.22226214793045	41.701	0.39731	41.791	41.596	41.994	0.089764					29	15	3	0	0	0	0.047633	1	7703	7703		43.858	19.838	1	95570			13031	2568	8600	8666	17710	17710		165;166			-0.06029517705519538
MAVIDGNVM	9	2 Oxidation (M)	_M(Oxidation (M))AVIDGNVM(Oxidation (M))_		M(1)AVIDGNVM(1)		M(85)AVIDGNVM(85)	0	0	2		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2225646972656	2	491.222628	980.430703	-0.33283	-0.00016349	-0.58407	-0.00028691	-0.9169	-0.0004504	491.22263744871213	42.124	0.46722	42.214	41.994	42.461	0.089764					30	17	3	0	0	0	0.0046499	2	7792	7785;7792		85.272	43.432	1	104180			13032	2568	8600	8666	17711;17712	17712		165;166			-0.06029517705519538
MAVIDGNVM	9	2 Oxidation (M)	_M(Oxidation (M))AVIDGNVM(Oxidation (M))_		M(1)AVIDGNVM(1)		M(75)AVIDGNVM(75)	0	0	2		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2222595214844	2	491.222628	980.430703	-0.013948	-6.8516E-06	-0.74123	-0.00036411	-0.75518	-0.00037096	491.22220927309854	44.028	1.5539	44.117	43.713	45.267	0.088924					96	55	2	0	0	0	0.0074933	2	8467	8301;8467		74.929	40.527	1	125300			13033	2568	8600	8666	17713;17714	17714		165;166			-0.06029517705519538
MAVIDGNVM	9	Oxidation (M)	_MAVIDGNVM(Oxidation (M))_		MAVIDGNVM(1)		M(-63)AVIDGNVM(63)	0	0	1		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2250671386719	2	483.225171	964.435788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.773	1	54.773	54.273	55.273	0								0	0	0	0.020552	1	11768	11768		62.573	33.491	2				13034	2568	8600	8667	17715	17715		165;166			-0.0478521384288797
MAVIDGNVM	9	Oxidation (M)	_MAVIDGNVM(Oxidation (M))_		MAVIDGNVM(1)		M(-65)AVIDGNVM(65)	0	0	1		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.22491455078125	2	483.225171	964.435788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.572	1	54.637	54.137	55.137	0.065128								0	0	0	0.015548	1	11570	11570		65.235	29.108	2				13035	2568	8600	8667	17716	17716		165;166			-0.0478521384288797
MAVIDGNVM	9	Oxidation (M)	_MAVIDGNVM(Oxidation (M))_		MAVIDGNVM(1)		M(-56)AVIDGNVM(56)	0	0	1		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.22515869140625	2	483.225171	964.435788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.719	1	54.784	54.284	55.284	0.065128								0	0	0	0.032573	1	11615	11615		56.177	20.05	2				13036	2568	8600	8667	17717	17717		165;166			-0.0478521384288797
MAVWEAEQL	9	Unmodified	_MAVWEAEQL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3190307617188	2	538.757692	1075.50083	0.55964	0.00030151	-0.86366	-0.0004653	-0.30401	-0.00016379	538.7571788733347	70.62	0.32744	70.62	70.478	70.806	0					17	11	2	0	0	0	0.24277	1	16636	16636		14.405	1.5328	1	68256			13037	2476	8601	8668	17718	17718					-0.033898960454280314
MAVWEAEQL	9	Oxidation (M)	_M(Oxidation (M))AVWEAEQL_		M(1)AVWEAEQL		M(56)AVWEAEQL	0	0	1		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2843017578125	2	546.755149	1091.49575	0.48727	0.00026642	0.33185	0.00018144	0.81912	0.00044786	546.7554274751274	65.235	0.59886	65.304	65.087	65.686	0.068909					29	23	2	0	0	0	0.071889	1	14780	14780		55.503	29.235	1	109160			13038	2476	8601	8669	17719	17719		156			-0.04634199908036862
MAWKYSNRT	9	Unmodified	_MAWKYSNRT_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.284912109375	2	578.782033	1155.54951	0.46108	0.00026687	-0.090358	-5.2298E-05	0.37073	0.00021457	579.2841927744802	68.552	0.83685	68.616	68.306	69.143	0.063507					109	31	5	0	0	0	0.19398	1	15825	15825		19.257	3.1079	1	1318400			13039	2227	8602	8670	17720	17720					-0.02203982685682604
MAWPPRAL	8	Unmodified	_MAWPPRAL_					0	0	0		ENST00000466112.5_1_3:52559234-52559279:-|nuORF	ENST00000466112.5_1_3:52559234-52559279:-|nuORF	ENST00000466112.5_1_3:52559234-52559279:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.255615234375	2	471.254923	940.495293	0.091534	4.3136E-05	2.2068	0.00104	2.2983	0.0010831	471.2560073879727	37.451	0.30684	37.451	37.34	37.646	0					18	10	2	0	0	0	0.3576	1	6549	6549		2.5775	0.51773	1	20231			13040	6638	8603	8671	17721	17721					0.022664699534288957
MAYAQSTLFS	10	Unmodified	_MAYAQSTLFS_					0	0	0			REV__ENST00000450506.5_1_1:151318986-151319332:-|nuORF	REV__ENST00000450506.5_1_1:151318986-151319332:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.729736328125	2	559.762975	1117.5114	0.32684	0.00018295	1.6328	0.00091396	1.9596	0.0010969	560.2660271620227	95.684	0.31654	95.684	95.575	95.891	0					17	13	2	0	0	0	0.31565	1	24255	24255		12.241	1.4167	1	123810	+		13041	11923	8604	8672	17722	17722					-0.04265913390986498
MCCLLLWVFF	10	Unmodified	_MCCLLLWVFF_					0	0	0		ENST00000252593.6_1_19:17513793-17513853:-|nuORF	ENST00000252593.6_1_19:17513793-17513853:-|nuORF	ENST00000252593.6_1_19:17513793-17513853:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.8132934570312	2	637.810359	1273.60616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.575	1	93.612	93.112	94.112	0.037369								0	0	0	0.33648	1	23432	23432		4.3292	0.13973	1				13042	5839	8605	8673	17723	17723					-0.019693944450182244
MCKIFGQGKE	10	Unmodified	_MCKIFGQGKE_					0	0	0		ENST00000263464.7_1_11:102193294-102193357:+|nuORF	ENST00000263464.7_1_11:102193294-102193357:+|nuORF	ENST00000263464.7_1_11:102193294-102193357:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2825317382812	2	570.780644	1139.54674	0.074802	4.2695E-05	-0.13699	-7.8193E-05	-0.062191	-3.5498E-05	570.7805739151441	35.459	0.61353	35.459	35.062	35.675	0					43	21	3	0	0	0	0.45945	1	5967	5967		2.9952	0	1	82874			13043	5879	8606	8674	17724	17724					-0.01745574134815797
MCPRPLPAL	9	Unmodified	_MCPRPLPAL_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2894592285156	2	499.269716	996.524878	-0.035879	-1.7913E-05	-0.22593	-0.0001128	-0.26181	-0.00013072	499.26946425075903	45.858	0.91941	45.858	45.53	46.449	0					105	31	4	0	0	0	0.31496	1	9202	9202		4.756	0.42677	1	2204300	+		13044	11078	8607	8675	17725	17725					0.026476659072613984
MCPWCPYT	8	Unmodified	_MCPWCPYT_					0	0	0			REV__ENST00000587110.1_1_17:41796950-41797316:-|nuORF	REV__ENST00000587110.1_1_17:41796950-41797316:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.6893310546875	2	500.689909	999.365266	-0.096404	-4.8269E-05	-1.2256	-0.00061365	-1.322	-0.00066192	500.6892178742831	32.236	0.58772	32.236	31.977	32.564	0					42	23	2	0	0	0	0.53817	1	4999	4999		2.5775	2.5775	1	42283	+		13045	12564	8608	8676	17726	17726					-0.134442104322261
MCSFFLFLF	9	Unmodified	_MCSFFLFLF_					0	0	0			REV__ENST00000242261.5_1_7:19155415-19155475:-|nuORF	REV__ENST00000242261.5_1_7:19155415-19155475:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.774169921875	2	577.774299	1153.53405	0.43469	0.00025115	-0.60719	-0.00035082	-0.1725	-9.9665E-05	577.7737662687696	94.16	0.35068	94.198	94.02	94.37	0.038086					30	15	3	0	0	0	0.14718	1	23596	23596		24.674	0	1	145780	+		13046	11200	8609	8677	17727	17727					-0.036579855270701955
MCTLFFISGF	10	Unmodified	_MCTLFFISGF_					0	0	0			REV__ENSG00000144476|ENST00000272928|ACKR3	REV__ENSG00000144476|ENST00000272928|ACKR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.274169921875	2	583.274664	1164.53477	0.62664	0.0003655	-1.6302	-0.00095085	-1.0036	-0.00058535	583.273322556995	63.036	1.1575	63.036	62.575	63.733	0					97	41	3	0	0	0	0.28643	1	14289	14289		24.021	4.7636	1	620730	+		13047	9498	8610	8678	17728	17728					-0.0409119087801173
MCYPCFFQY	9	Unmodified	_MCYPCFFQY_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|43|1|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|43|1|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2317504882812	2	601.229399	1200.44424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.07	1	118.07	117.57	118.57	0								0	0	0	0.29233	1	29892	29892		0.6015	0.076735	1		+		13048	12677	8611	8679	17729	17729					-0.1479598319795059
MDCSESDH	8	Unmodified	_MDCSESDH_					0	0	0		ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;GALNT10|p.F574V|1|0.07|ENSG00000164574|chr5:154416880-154416880|T/G|missense_variant	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	462.1465759277344	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.274	1	77.309	76.809	77.809	0.034485								0	0	0	0.38822	1	18475	18475		0.79363	0	1				13049	6954	8612	8680	17730	17730					-0.18456704084189823
MDDHLRKEE	9	Unmodified	_MDDHLRKEE_					0	0	0		ENSG00000133393|ENST00000255759|CEP20	ENSG00000133393|ENST00000255759|CEP20	ENSG00000133393|ENST00000255759|CEP20	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7913208007812	2	586.771862	1171.52917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.207	1	56.273	55.773	56.773	0.066452								0	0	0	0.2428	1	12068	12068		10.824	0.75	1				13050	2626	8613	8681	17731	17731					-0.049731981360991995
MDEEIVEL	8	Unmodified	_MDEEIVEL_					0	0	0		tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.22882080078125	2	489.228433	976.442313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.351	1	39.44	38.94	39.94	0.088562								0	0	0	0.38822	1	6971	6971		2.5775	0.27475	1				13051	13587	8614	8682	17732	17732					-0.04684997410527103
MDEPMFTQPL	10	Unmodified	_MDEPMFTQPL_					0	0	0		OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000197444|Q9ULD0-3|OGDHL;nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;ENSG00000197444|ENST00000374103|OGDHL	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7713623046875	2	604.769942	1207.52533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.15	1	115.16	114.66	115.66	0.013092								0	0	0	0.33892	1	29280	29280		1.4819	0	1				13052	1494;5298	8615	8683	17733	17733					-0.07013003954170927
MDERFRPLTF	10	Unmodified	_MDERFRPLTF_					0	0	0		CLCN6|p.E733D|1|0.09|ENSG00000011021|chr1:11837403-11837403|G/C|missense_variant	CLCN6|p.E733D|1|0.09|ENSG00000011021|chr1:11837403-11837403|G/C|missense_variant	CLCN6|p.E733D|1|0.09|ENSG00000011021|chr1:11837403-11837403|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.9033508300781	3	437.888657	1310.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.646	1	45.732	45.232	46.232	0.085617								0	0	0	0.33869	1	8869	8869		1.7423	0.7287	1				13053	198	8616	8684	17734	17734					0.0012453106567136274
MDERGYCC	8	Unmodified	_MDERGYCC_					0	0	0		TNMD|p.L259M|1|0.62|ENSG00000000005|chrX:100599538-100599538|C/A|missense_variant	TNMD|p.L259M|1|0.62|ENSG00000000005|chrX:100599538-100599538|C/A|missense_variant	TNMD|p.L259M|1|0.62|ENSG00000000005|chrX:100599538-100599538|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7326354980469	2	488.669705	975.324858	-0.15784	-7.7133E-05	0.86602	0.0004232	0.70817	0.00034606	488.67034232025145	33.596	0.82634	33.596	33.08	33.906	0					33	30	2	0	0	0	0.3576	1	5285	5285		2.5775	0	1	15877			13054	13435	8617	8685	17735	17735					-0.16379176822647423
MDGRIYAILW	10	Unmodified	_MDGRIYAILW_					0	0	0			REV__KCNJ6|p.S175Lfs*17|1|0.13|ENSG00000157542|chr21:37714634-37714634|A/-|frameshift_variant	REV__KCNJ6|p.S175Lfs*17|1|0.13|ENSG00000157542|chr21:37714634-37714634|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3258056640625	2	619.323534	1236.63251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.242	1	96.281	95.781	96.781	0.039772								0	0	0	0.33648	1	24246	24246		4.3292	0	1		+		13055	9779	8618	8686	17736	17736					0.023663340423354384
MDGWMDEW	8	Unmodified	_MDGWMDEW_					0	0	0		nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.8240966796875	2	535.191328	1068.3681	-0.070474	-3.7717E-05	-0.63987	-0.00034245	-0.71035	-0.00038017	535.1909677803961	29.205	0.55554	29.205	29.033	29.588	0					53	32	2	0	0	0	0.3576	1	4145	4145		4.756	0.42677	1	26338			13056	7478	8619	8687	17737	17737					-0.16334663773727698
MDHRSDLVF	9	Unmodified	_MDHRSDLVF_					0	0	0		CHST14|p.L180I|1|0.39|ENSG00000169105|chr15:40471751-40471751|C/A|missense_variant;ENSG00000169105|ENST00000306243|CHST14	CHST14|p.L180I|1|0.39|ENSG00000169105|chr15:40471751-40471751|C/A|missense_variant	CHST14|p.L180I|1|0.39|ENSG00000169105|chr15:40471751-40471751|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7302856445312	2	560.266216	1118.51788	0.47153	0.00026418	1.6083	0.00090106	2.0798	0.0011652	560.7706561631404	94.323	0.42078	94.361	94.123	94.544	0.038086					20	16	2	0	0	0	0.25376	1	23697	23697		6.2058	1.4498	1	43766			13057	194	8620	8688	17738	17738					-0.036639754395991986
MDLCDRDSPF	10	Unmodified	_MDLCDRDSPF_					0	0	0		nc|ENSG00000110013|Q9HAT2-2|SIAE;ENSG00000110013|ENST00000263593|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3252563476562	2	599.746998	1197.47944	0.18317	0.00010986	-2.3489	-0.0014088	-2.1658	-0.0012989	599.7456342893529	59.56	0.80744	59.632	59.402	60.21	0.072338					45	30	2	0	0	0	0.31731	1	13019	13019		6.2058	2.2614	1	115270			13058	1647	8621	8689	17739	17739					-0.11139649136430307
MDQIMESVL	9	Unmodified	_MDQIMESVL_					0	0	0		ENST00000557141.1_1_14:68265921-68266314:+|nuORF;ENST00000456064.1_1_20:10594086-10594842:-|nuORF;ENSG00000213551|ENST00000372950|DNAJC9	ENST00000557141.1_1_14:68265921-68266314:+|nuORF	ENST00000557141.1_1_14:68265921-68266314:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2515258789062	2	533.251385	1064.48822	0.46617	0.00024859	-0.00075615	-4.0322E-07	0.46541	0.00024818	533.2511654486476	53.589	1.2867	53.589	53.036	54.322	0					90	49	2	0	0	0	0.24767	1	11573	11573		13.042	0	1	136210			13059	5547	8622	8690	17740	17740					-0.041446754999469704
MDQTCRLTM	9	Unmodified	_MDQTCRLTM_					0	0	0			REV__nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	REV__nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2498168945312	2	549.740662	1097.46677	0.4921	0.00027053	-1.4943	-0.00082149	-1.0022	-0.00055096	549.7396582064113	85.707	0.42928	85.707	85.53	85.959	0					34	17	3	0	0	0	0.2418	1	21176	21176		13.906	3.0821	1	193730	+		13060	12879	8623	8691	17741	17741					-0.07806383800334515
MDQTCRLTM	9	Unmodified	_MDQTCRLTM_					0	0	0			REV__nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	REV__nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.740662	1097.46677	0.65485	0.00036	-2.0187	-0.0011098	-1.3639	-0.00074978	549.7395921157088	85.702	0.48582	85.728	85.549	86.035	0.025169	0.010109	-0.00025026	NaN	13.906	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149770	+		13061	12879	8623	8691							-0.07806383800334515
MDSLADYAL	9	Unmodified	_MDSLADYAL_					0	0	0		ENSG00000167800|ENST00000335385|TBX10	ENSG00000167800|ENST00000335385|TBX10	ENSG00000167800|ENST00000335385|TBX10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.728515625	2	499.7286	997.442648	0.45669	0.00022822	-0.22462	-0.00011225	0.23207	0.00011597	499.72836741064566	74.623	0.48406	74.623	74.4	74.884	0					24	17	2	0	0	0	0.29105	1	17873	17873		7.9102	0	1	78029			13062	4234	8624	8692	17742	17742					-0.056175776907025465
MDSLADYAL	9	Unmodified	_MDSLADYAL_					0	0	0		ENSG00000167800|ENST00000335385|TBX10	ENSG00000167800|ENST00000335385|TBX10	ENSG00000167800|ENST00000335385|TBX10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.72833251953125	2	499.7286	997.442648	0.43842	0.00021909	-0.2667	-0.00013328	0.17171	8.581E-05	499.7283161810814	74.584	0.42146	74.632	74.45	74.872	0.048546					18	14	2	0	0	0	0.29105	1	17657	17657		7.9102	0	1	72513			13063	4234	8624	8692	17743	17743					-0.056175776907025465
MDSREAFCFL	10	Unmodified	_MDSREAFCFL_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.8485412597656	3	406.847581	1217.52091	0.073641	2.9961E-05	2.1475	0.00087371	2.2212	0.00090367	406.8484797348305	51.563	0.43951	51.633	51.475	51.915	0.069874					28	15	3	0	0	0	0.45632	1	10661	10661		3.5871	0	1	68811			13064	4506	8625	8693	17744	17744					-0.07914468377089179
MDTAIMPLS	9	Unmodified	_MDTAIMPLS_					0	0	0		ENST00000381237.5_3_8:22272410-22273351:+|nuORF	ENST00000381237.5_3_8:22272410-22273351:+|nuORF	ENST00000381237.5_3_8:22272410-22273351:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2872619628906	2	489.735371	977.456189	-0.21275	-0.00010419	0.79781	0.00039071	0.58506	0.00028652	489.735690212306	28.39	0.4782	28.39	28.221	28.699	0					32	23	2	0	0	0	0.25644	1	3894	3894		3.9444	1.6417	1	37711			13065	6294	8626	8694	17745	17745					-0.03344043183096801
MDVQKWYLR	9	Unmodified	_MDVQKWYLR_					0	0	0		ENSG00000269964|ENST00000684080|MEI4	ENSG00000269964|ENST00000684080|MEI4	ENSG00000269964|ENST00000684080|MEI4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.821044921875	2	619.821158	1237.62776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.58	1	100.58	100.08	101.08	0								0	0	0	0.28631	1	25723	25723		1.8442	0	1				13066	5736	8627	8695	17746	17746					0.018454498995652102
MDWKVLTWL	9	Unmodified	_MDWKVLTWL_					0	0	0		nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.74755859375	2	596.315177	1190.6158	0.13309	7.9361E-05	2.6951	0.0016071	2.8282	0.0016865	596.3164287058913	82.326	0.74007	82.348	81.938	82.678	0.021744					35	26	2	0	0	0	0.23478	1	19919	19919		17.113	2.2746	1	101120			13067	808	8628	8696	17747	17747					0.028118331563973697
MEAPAQLLF	9	Unmodified	_MEAPAQLLF_					0	0	0		nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000244437|P01624|IGKV3-15	nc|ENSG00000244437|P01624|IGKV3-15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.26519775390625	2	510.265153	1018.51575	0.3034	0.00015481	-0.30929	-0.00015782	-0.0058948	-3.0079E-06	510.26506274791853	82.455	0.77236	82.477	81.992	82.764	0.021744					56	27	3	0	0	0	0.16392	1	20068	20068		22.736	0.98964	1	309600			13068	7594	8629	8697	17748	17748					0.007235958225805916
MEAPAQLLF	9	Unmodified	_MEAPAQLLF_					0	0	0		nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000244437|P01624|IGKV3-15	nc|ENSG00000244437|P01624|IGKV3-15	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	510.265153	1018.51575	0.3034	0.00015481	-0.30929	-0.00015782	-0.0058948	-3.0079E-06	510.26506274791853	82.455	0.77236	82.477	81.992	82.764	0.021744	0.0075434	0.00013778	NaN	22.736	56	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309600			13069	7594	8629	8697							0.007235958225805916
MECLDQIYWS	10	Unmodified	_MECLDQIYWS_					0	0	0			REV__ENSG00000138794|ENST00000265164|CASP6	REV__ENSG00000138794|ENST00000265164|CASP6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.866943359375	2	644.272849	1286.53115	0.06383	4.1124E-05	-2.7299	-0.0017588	-2.6661	-0.0017177	644.7748007144963	71.962	0.10905	71.962	71.889	71.998	0					5	3	2	0	0	0	0.31794	1	16990	16990		3.5965	0.31518	1	74760	+		13070	9328	8630	8698	17749	17749					-0.10065905442502299
MEDKHVCI	8	Unmodified	_MEDKHVCI_					0	0	0		ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7393493652344	2	487.725338	973.436123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.302	1	29.302	28.802	29.802	0								0	0	0	0.38822	1	4090	4090		2.5775	0	1				13071	4615	8631	8699	17750	17750					-0.051657941230473625
MEDLIHEIY	9	Unmodified	_MEDLIHEIY_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000481157.1_1_12:65261855-65261975:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7927856445312	2	581.776082	1161.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.934	1	60.006	59.506	60.506	0.072338								0	0	0	0.090962	1	13201	13201		36.044	23.513	1				13072	3334	8632	8700	17751	17751					-0.036696442195079726
MEDQDLKP	8	Unmodified	_MEDQDLKP_					0	0	0		ENST00000508325.5_1_5:68860950-68862940:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF	ENST00000508325.5_1_5:68860950-68862940:+|nuORF	ENST00000508325.5_1_5:68860950-68862940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.22613525390625	2	488.226225	974.437897	0.04364	2.1306E-05	0.71416	0.00034867	0.7578	0.00036998	488.2264021061339	36.153	0.9601	36.153	35.872	36.833	0					71	36	3	0	0	0	0.53026	2	6096	6096;6230		7.9102	0	1	87997			13073	3259	8633	8701	17752;17753	17752					-0.050344618334634106
MEDRRQFL	8	Unmodified	_MEDRRQFL_					0	0	0			REV__ENSG00000136935|ENST00000373555|GOLGA1	REV__ENSG00000136935|ENST00000373555|GOLGA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7923583984375	2	547.774208	1093.53386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.868	1	88.868	88.368	89.368	0								0	0	0	0.38822	1	22159	22159		13.508	2.684	1		+		13074	9261	8634	8702	17754	17754					-0.009162692026848163
MEDVRVNCIGL	11	Unmodified	_MEDVRVNCIGL_					0	0	0			REV__PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	REV__PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.8741149902344	3	416.874019	1247.60023	0.042658	1.7783E-05	-1.0525	-0.00043875	-1.0098	-0.00042097	416.8740565702994	28.524	0.63144	28.524	28.378	29.009	0					60	31	4	0	0	0	0.40578	1	3892	3892		1.2148	0.25256	1	31726	+		13075	9712	8635	8703	17755	17755					-0.013668214229483056
MEDVRVNCIGL	11	Unmodified	_MEDVRVNCIGL_					0	0	0			REV__PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	REV__PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	416.874019	1247.60023	0.042658	1.7783E-05	-1.0525	-0.00043875	-1.0098	-0.00042097	416.8740565702994	28.524	0.63144	28.524	28.378	29.009	0	-0.013068	-0.0010647	NaN	1.2148	60	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31726	+		13076	9712	8635	8703							-0.013668214229483056
MEEEAGQTSI	10	Unmodified	_MEEEAGQTSI_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7368774414062	2	547.737154	1093.45975	-0.073862	-4.0457E-05	-0.42132	-0.00023078	-0.49519	-0.00027123	547.7368799026807	43.702	0.79052	43.702	43.39	44.18	0					75	28	4	0	0	0	0.29918	1	8406	8406		22.658	3.2961	1	414790			13077	3761	8636	8704	17756	17756					-0.08323701875519873
MEEEAGQTSI	10	Unmodified	_MEEEAGQTSI_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7369384765625	2	547.737154	1093.45975	0.046024	2.5209E-05	-0.28761	-0.00015753	-0.24158	-0.00013232	547.7369999059772	43.645	0.73776	43.734	43.394	44.132	0.088921					74	26	4	0	0	0	0.18939	2	8243	8243;8290		34.932	3.6637	1	316180			13078	3761	8636	8704	17757;17758	17757					-0.08323701875519873
MEEKMQISGSN	11	Unmodified	_MEEKMQISGSN_					0	0	0		ENST00000603162.1_1_10:111440451-111440523:+|nuORF	ENST00000603162.1_1_10:111440451-111440523:+|nuORF	ENST00000603162.1_1_10:111440451-111440523:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.53314208984375	3	418.521534	1252.54277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.694	1	55.759	55.259	56.259	0.065128								0	0	0	0.33044	1	11912	11912		4.1166	2.5243	1				13079	7300	8637	8705	17759	17759					-0.07339708419181079
MEEKNLSSAGP	11	Unmodified	_MEEKNLSSAGP_					0	0	0			REV__ENST00000534553.5_1_11:61722629-61730618:+|nuORF	REV__ENST00000534553.5_1_11:61722629-61730618:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7745971679688	2	581.774071	1161.53359	0.65443	0.00038073	-0.23783	-0.00013836	0.4166	0.00024237	581.7743155969057	67.305	1.3972	67.305	67.011	68.408	0					102	52	4	0	0	0	0.40977	1	15785	15785		2.086	0.24177	1	2105600	+		13080	12373	8638	8706	17760	17760					-0.040717337132036846
MEEMRNVEL	9	Unmodified	_MEEMRNVEL_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.792236328125	2	575.765191	1149.51583	0.39955	0.00023005	3.7257	0.0021451	4.1252	0.0023752	575.7677147912201	75.528	0.15688	75.528	75.404	75.561	0					8	5	2	0	0	0	0.21622	1	18077	18077		21.537	6.2885	1	116310			13081	3728	8639	8707	17761	17761					-0.05294772239722079
MEFERYLN	8	Unmodified	_MEFERYLN_					0	0	0		ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7824096679688	2	551.255317	1100.49608	0.50068	0.000276	1.311	0.00072271	1.8117	0.00099871	551.2559900815778	85.713	0.549	85.713	85.53	86.079	0					39	22	2	0	0	0	0.3576	1	21212	21212		4.3292	0.73274	1	371280			13082	3302	8640	8708	17762	17762					-0.05014780188162149
MEFERYLN	8	Unmodified	_MEFERYLN_					0	0	0		ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7824096679688	2	551.255317	1100.49608	0.68223	0.00037608	0.929	0.00051212	1.6112	0.0008882	551.2558215575141	85.731	0.52316	85.756	85.511	86.035	0.025177					45	19	3	0	0	0	0.3576	1	21052	21052		4.3292	0	1	189640			13083	3302	8640	8708	17763	17763					-0.05014780188162149
MEGASQAN	8	Unmodified	_MEGASQAN_					0	0	0		WDTC1|p.D623N|1|0.35|ENSG00000142784|chr1:27306216-27306216|G/A|missense_variant;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	WDTC1|p.D623N|1|0.35|ENSG00000142784|chr1:27306216-27306216|G/A|missense_variant	WDTC1|p.D623N|1|0.35|ENSG00000142784|chr1:27306216-27306216|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1701965332031	2	404.16871	806.322867	-0.036481	-1.4745E-05	2.4326	0.00098316	2.3961	0.00096842	404.17009284753357	71.907	3.2036	71.963	71.649	74.853	0.055931					273	116	5	0	0	0	0.53817	1	17506	17506		2.5775	0.27475	1	12715000			13084	3121	8641	8709	17764	17764					-0.08804146244585809
MEGPLPFWK	9	Unmodified	_MEGPLPFWK_					0	0	0			REV__ENST00000428670.7_1_12:90049866-90102507:-|nuORF	REV__ENST00000428670.7_1_12:90049866-90102507:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7955932617188	2	552.78097	1103.54739	0.86873	0.00048022	0.90555	0.00050057	1.7743	0.00098078	552.7813296553121	66.184	0.61884	66.184	65.988	66.607	0					44	22	3	0	0	0	0.25979	1	15239	15239		11.64	0	1	330290	+		13085	11842	8642	8710	17765	17765					-0.000244114234646986
MEIIQNCFE	9	Unmodified	_MEIIQNCFE_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2694091796875	2	563.74901	1125.48347	0.58948	0.00033232	0.80154	0.00045187	1.391	0.00078418	563.7495693053755	92.757	0.92213	92.757	92.513	93.435	0					45	35	2	0	0	0	0.2553	1	23273	23273		5.2969	1.3525	1	125610	+		13086	10747	8643	8711	17766	17766					-0.0742555964272924
MEIIQNCFE	9	Unmodified	_MEIIQNCFE_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	563.74901	1125.48347	0.58229	0.00032827	0.46823	0.00026396	1.0505	0.00059223	563.7492928648928	92.746	0.86156	92.783	92.586	93.447	0.037071	0.012909	-0.00012794	NaN	5.2969	43	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123400	+		13087	10747	8643	8711							-0.0742555964272924
MEKGSIMLDRE	11	Unmodified	_MEKGSIMLDRE_					0	0	0		nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;SLC4A4|p.V1042Sfs*5|1|0.3|ENSG00000080493|chr4:71563811-71563812|-/A|frameshift_variant;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.8790283203125	3	436.881062	1307.62136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.126	1	32.2	31.7	32.7	0.07378								0	0	0	0.34108	1	4807	4807		0.36667	0.097654	1				13088	892	8644	8712	17767	17767					-0.020148561141013488
MEKIEGWIF	9	Unmodified	_MEKIEGWIF_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8182983398438	2	576.791535	1151.56852	0.47469	0.0002738	4.2063	0.0024262	4.681	0.0027	576.7936736538512	64.734	0.64884	64.803	64.608	65.257	0.068916					28	24	2	0	0	0	0.23975	1	14736	14736		14.838	3.198	1	111090	+		13089	8167	8645	8713	17768	17768					-0.0012044611460169108
MELFLEAL	8	Unmodified	_MELFLEAL_					0	0	0			REV__nc|ENSG00000158941|Q8N163-2|CCAR2	REV__nc|ENSG00000158941|Q8N163-2|CCAR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.25628662109375	2	483.254254	964.493955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.061	1	37.061	36.561	37.561	0								0	0	0	0.38822	1	6407	6407		2.3027	0	1		+		13090	9816	8646	8714	17769	17769					0.010287910740089501
MELGLSWVF	9	Unmodified	_MELGLSWVF_					0	0	0		nc|ENSG00000211942|P01766|IGHV3-13;nc|ENSG00000211938|P01780|IGHV3-7	nc|ENSG00000211942|P01766|IGHV3-13	nc|ENSG00000211942|P01766|IGHV3-13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2730712890625	2	541.272978	1080.5314	0.58393	0.00031606	-0.098769	-5.3461E-05	0.48516	0.0002626	541.2727661433386	100.73	0.30698	100.77	100.66	100.97	0.042839					27	18	2	0	0	0	0.25209	1	25608	25608		12.532	2.3482	1	72167			13091	7602	8647	8715	17770	17770					-0.005641176603603526
MELGPPLTLQ	10	Unmodified	_MELGPPLTLQ_					0	0	0			REV__ENSG00000107159|ENST00000378357|CA9	REV__ENSG00000107159|ENST00000378357|CA9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8135986328125	2	549.796817	1097.57908	0.39674	0.00021812	-2.7891	-0.0015335	-2.3924	-0.0013153	549.7956850468095	73.526	1.0215	73.578	73.239	74.261	0.052567					100	39	4	0	0	0	0.16124	2	17376	17376;17426		38.176	3.3752	1	1936200	+		13092	8587	8648	8716	17771;17772	17771					0.03419536539809087
MELINQVNQVD	11	Unmodified	_MELINQVNQVD_					0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88238525390625	3	434.88346	1301.62855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.889	1	50.889	50.389	51.389	0								0	0	0	0.33924	1	10583	10583		1.0136	0.23704	1		+		13093	10332	8649	8717	17773	17773					-0.0101980024205659
MELIWNLCE	9	Unmodified	_MELIWNLCE_					0	0	0		ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85	ENST00000583548.1_1_17:73204633-73212422:+|nuORF	ENST00000583548.1_1_17:73204633-73212422:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7916870117188	2	575.767203	1149.51985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.465	1	77.465	76.965	77.965	0								0	0	0	0.20456	1	18690	18690		17.443	3.5366	1				13094	2293	8650	8718	17774	17774					-0.04892682746026367
MEMTPRQCP	9	Unmodified	_MEMTPRQCP_					0	0	0		ENST00000561585.1_1_16:89949861-89949939:+|nuORF	ENST00000561585.1_1_16:89949861-89949939:+|nuORF	ENST00000561585.1_1_16:89949861-89949939:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.26025390625	2	546.73538	1091.45621	0.42865	0.00023436	-2.053	-0.0011225	-1.6244	-0.00088811	546.733999055532	57.007	0.4044	57.074	56.914	57.318	0.066452					22	14	2	0	0	0	0.25579	1	12368	12368		4.3292	0.38484	1	161250			13095	7156	8651	8719	17775	17775					-0.08586366454755989
MENKRTGFS	9	Unmodified	_MENKRTGFS_					0	0	0		tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.2785034179688	2	535.258391	1068.50223	0.82829	0.00044335	0.70619	0.00037799	1.5345	0.00082135	535.2586720481789	54.455	0.83871	54.52	54.285	55.123	0.065128					89	40	4	0	0	0	0.23216	1	11691	11691		14.838	0.93222	1	749620			13096	13746	8652	8720	17776	17776					-0.02928261956640199
MENQRSSPL	9	Unmodified	_MENQRSSPL_					0	0	0		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.28076171875	2	531.255848	1060.49714	-0.061793	-3.2828E-05	-1.1286	-0.00059957	-1.1904	-0.0006324	531.255276357648	45.854	0.65419	45.854	45.53	46.184	0					50	22	3	0	0	0	0.25052	1	8986	8986		8.7454	2.3913	1	110510			13097	5223	8653	8721	17777	17777					-0.030685658192624032
MENQRSSPL	9	Unmodified	_MENQRSSPL_					0	0	0		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2808837890625	2	531.255848	1060.49714	0.16053	8.5283E-05	-1.7358	-0.00092213	-1.5752	-0.00083685	531.255138575522	45.737	0.75001	45.823	45.525	46.275	0.085617					53	28	3	0	0	0	0.22912	1	8849	8849		18.146	4.6385	1	118340			13098	5223	8653	8721	17778	17778					-0.030685658192624032
MEQLFKYRE	9	Unmodified	_MEQLFKYRE_					0	0	0			REV__nc|ENSG00000159086|Q9Y5B6-3|PAXBP1	REV__nc|ENSG00000159086|Q9Y5B6-3|PAXBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3109130859375	2	622.310623	1242.60669	-0.713	-0.00044371	0.24928	0.00015513	-0.46372	-0.00028858	622.3108233176667	17.389	0.27438	17.389	17.261	17.535	0					49	33	2	0	0	0	0.34704	1	895	895		0.52476	0	1	26140	+		13099	9818	8654	8722	17779	17779					-0.0049056019993258815
MERALNSYFEP	11	Unmodified	_MERALNSYFEP_					0	0	0		ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2;ENST00000478507.1_1_6:24666755-24667129:-|nuORF	ENSG00000111802|ENST00000378198|TDP2	ENSG00000111802|ENST00000378198|TDP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.869873046875	3	452.879939	1355.61799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.736	1	26.736	26.236	27.236	0								0	0	0	0.33867	1	3345	3345		1.2148	0.51716	1				13100	1728	8655	8723	17780	17780					-0.045597828964901055
MERDLVRERT	10	Unmodified	_MERDLVRERT_					0	0	0		ENST00000416599.5_1_13:52758227-52760885:-|nuORF	ENST00000416599.5_1_13:52758227-52760885:-|nuORF	ENST00000416599.5_1_13:52758227-52760885:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2509460449219	3	435.562832	1303.66667	0.23611	0.00010284	-3.3112	-0.0014422	-3.0751	-0.0013394	435.89644113752996	75.345	0.14189	75.389	75.328	75.47	0.044037					6	4	2	0	0	0	0.31821	1	17872	17872		3.0723	0.98626	1	39283			13101	6427	8656	8724	17781	17781					0.026981304632727188
MESSVLPGE	9	Unmodified	_MESSVLPGE_					0	0	0			REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7208557128906	2	474.720775	947.426998	-0.28816	-0.0001368	0.023533	1.1172E-05	-0.26463	-0.00012563	474.72073813094784	43.82	1.0271	43.909	43.453	44.48	0.088921					45	36	2	0	0	0	0.25979	1	8348	8348		11.64	0	1	51538	+		13102	11558	8657	8725	17782	17782					-0.048818642077208096
MESSVLPGE	9	Unmodified	_MESSVLPGE_					0	0	0			REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	474.720775	947.426998	-0.38951	-0.00018491	-0.053789	-2.5535E-05	-0.4433	-0.00021044	474.7207162867946	43.869	0.88986	43.869	43.497	44.387	0	-0.019961	-2.7301E-05	NaN	11.64	44	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45027	+		13103	11558	8657	8725							-0.048818642077208096
METLSICVRL	10	Unmodified	_METLSICVRL_					0	0	0		ENSG00000204899|ENST00000377818|MZT1	ENSG00000204899|ENST00000377818|MZT1	ENSG00000204899|ENST00000377818|MZT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.77880859375	2	582.809402	1163.60425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.93	1	27.017	26.517	27.517	0.0867								0	0	0	0.33892	1	3272	3272		1.4819	0.79152	1				13104	5499	8658	8726	17783	17783					0.02899268070746075
MEYHEGCYL	9	Unmodified	_MEYHEGCYL_					0	0	0		ENST00000311322.8_1_8:19823942-19823993:+|nuORF	ENST00000311322.8_1_8:19823942-19823993:+|nuORF	ENST00000311322.8_1_8:19823942-19823993:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.1178588867188	2	572.725535	1143.43652	0.09283	5.3166E-05	-0.083531	-4.784E-05	0.0092994	5.326E-06	572.7254170814617	89.969	0.4901	90.003	89.726	90.216	0.034065					27	19	2	0	0	0	0.25504	1	22289	22289		4.756	0	1	675580			13105	6001	8659	8727	17784	17784					-0.1294641919384958
MFALLYLMLF	10	Unmodified	_MFALLYLMLF_					0	0	0			REV__OR6V1|p.N40Kfs*11|1|0.26|ENSG00000225781|chr7:143052453-143052454|-/G|frameshift_variant	REV__OR6V1|p.N40Kfs*11|1|0.26|ENSG00000225781|chr7:143052453-143052454|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.22906494140625	3	421.228963	1260.66506	0.3821	0.00016095	-0.11755	-4.9516E-05	0.26455	0.00011144	421.22887757321286	65.825	0.94131	65.892	65.663	66.604	0.066872					64	35	2	0	0	0	0.45239	1	14954	14954		2.086	0	1	476410	+		13106	11030	8660	8728	17785	17785					0.045154051209692625
MFCHLWEI	8	Unmodified	_MFCHLWEI_					0	0	0		ENST00000380693.7_1_X:11777873-11777969:+|nuORF	ENST00000380693.7_1_X:11777873-11777969:+|nuORF	ENST00000380693.7_1_X:11777873-11777969:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7467041015625	2	539.746073	1077.47759	0.63586	0.0003432	0.83694	0.00045173	1.4728	0.00079494	539.7463901755038	93.105	0.67603	93.105	92.872	93.548	0					55	26	3	0	0	0	0.52924	1	23413	23413		8.5933	8.5933	1	446530			13107	6288	8661	8729	17786	17786					-0.058046133637390085
MFCHLWEI	8	Unmodified	_MFCHLWEI_					0	0	0		ENST00000380693.7_1_X:11777873-11777969:+|nuORF	ENST00000380693.7_1_X:11777873-11777969:+|nuORF	ENST00000380693.7_1_X:11777873-11777969:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.746337890625	2	539.746073	1077.47759	0.67782	0.00036585	0.84533	0.00045626	1.5232	0.00082211	539.7463712657577	93.026	0.67374	93.064	92.837	93.511	0.037369					75	28	4	0	0	0	0.52924	1	23242	23242		8.5933	8.5933	1	454040			13108	6288	8661	8729	17787	17787					-0.058046133637390085
MFDCTNFWH	9	Unmodified	_MFDCTNFWH_					0	0	0			REV__ENST00000397574.6_1_11:615555-615988:-|nuORF	REV__ENST00000397574.6_1_11:615555-615988:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.3504638671875	3	400.824888	1199.45284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.934	1	22.036	21.536	22.536	0.10178								0	0	0	0.29303	1	1886	1886		0.20686	0	1		+		13109	11734	8662	8730	17788	17788					-0.13891293237111313
MFDWVFDPF	9	Unmodified	_MFDWVFDPF_					0	0	0			REV__QTRT1|p.R374W|1|0.18|ENSG00000213339|chr19:10713178-10713178|C/T|missense_variant	REV__QTRT1|p.R374W|1|0.18|ENSG00000213339|chr19:10713178-10713178|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2579956054688	2	602.26261	1202.51067	0.46961	0.00028283	-3.2114	-0.0019341	-2.7418	-0.0016513	602.2585192860932	87.857	0.54167	87.887	87.709	88.251	0.030037					65	18	4	0	0	0	0.29105	1	21671	21671		7.9102	0	1	593630	+		13110	12970	8663	8731	17789	17789					-0.08248708040059682
MFDYLHLSVI	10	Unmodified	_MFDYLHLSVI_					0	0	0		FAM135B|p.F159L|1|0.15|ENSG00000147724|chr8:138250906-138250906|G/T|missense_variant	FAM135B|p.F159L|1|0.15|ENSG00000147724|chr8:138250906-138250906|G/T|missense_variant	FAM135B|p.F159L|1|0.15|ENSG00000147724|chr8:138250906-138250906|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.3180541992188	2	619.317917	1236.62128	0.13801	8.5473E-05	0.40799	0.00025268	0.546	0.00033815	619.3181734512976	97.585	0.42567	97.585	97.461	97.887	0					41	19	3	0	0	0	0.45794	1	24833	24833		3.2813	0.54611	1	185050			13111	7336	8664	8732	17790	17790					0.012435119482006485
MFDYLHLSVI	10	Unmodified	_MFDYLHLSVI_					0	0	0		FAM135B|p.F159L|1|0.15|ENSG00000147724|chr8:138250906-138250906|G/T|missense_variant	FAM135B|p.F159L|1|0.15|ENSG00000147724|chr8:138250906-138250906|G/T|missense_variant	FAM135B|p.F159L|1|0.15|ENSG00000147724|chr8:138250906-138250906|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3187866210938	2	619.317917	1236.62128	0.22693	0.00014054	0.090689	5.6166E-05	0.31762	0.00019671	619.3179696052977	97.533	0.59741	97.574	97.36	97.957	0.040855					52	30	3	0	0	0	0.46746	1	24691	24691		1.4819	0	1	118940			13112	7336	8664	8732	17791	17791					0.012435119482006485
MFEATTWEMAF	11	Unmodified	_MFEATTWEMAF_					0	0	0		nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4;OPA1-ATP13A4|1|fusion	nc|ENSG00000127249|Q4VNC1-2|ATP13A4	nc|ENSG00000127249|Q4VNC1-2|ATP13A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.19464111328125	3	455.194758	1362.56245	0.29056	0.00013226	-0.6281	-0.00028591	-0.33754	-0.00015365	455.19479113560215	51.991	0.68237	51.991	51.713	52.396	0					60	23	3	0	0	0	0.41309	1	10986	10986		1.3296	0.11481	1	142460			13113	2359	8665	8733	17792	17792					-0.10433332408433671
MFEELSDIF	9	Unmodified	_MFEELSDIF_					0	0	0		ENSG00000143344|ENST00000360851|RGL1;nc|ENSG00000143344|Q9NZL6-2|RGL1	ENSG00000143344|ENST00000360851|RGL1	ENSG00000143344|ENST00000360851|RGL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2796020507812	2	565.757358	1129.50016	0.17999	0.00010183	0.48415	0.00027391	0.66415	0.00037575	565.7573370589886	95.107	0.47227	95.146	94.935	95.407	0.038864					43	19	3	0	0	0	0.25174	1	23963	23963		7.2892	0	1	176520			13114	3149	8666	8734	17793	17793					-0.05940735485114601
MFEQPVTT	8	Unmodified	_MFEQPVTT_					0	0	0			REV__nc|ENSG00000289755|P50225-2|SULT1A1	REV__nc|ENSG00000289755|P50225-2|SULT1A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.72503662109375	2	476.725861	951.437169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.835	1	78.865	78.365	79.365	0.030159								0	0	0	0.38822	1	18948	18948		3.9444	0	1		+		13115	10819	8667	8735	17794	17794					-0.040492564824944566
MFFKFSRM	8	Unmodified	_MFFKFSRM_					0	0	0		NLRP11|p.P1016S|1|0.2|ENSG00000179873|chr19:55785681-55785681|G/A|missense_variant	NLRP11|p.P1016S|1|0.2|ENSG00000179873|chr19:55785681-55785681|G/A|missense_variant	NLRP11|p.P1016S|1|0.2|ENSG00000179873|chr19:55785681-55785681|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2680053710938	2	547.269716	1092.52488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.655	1	24.752	24.252	25.252	0.096073								0	0	0	0.38822	1	2622	2622		0.79363	0	1				13116	7646	8668	8736	17795	17795					-0.01768334092707846
MFGLCCNKSLF	11	Unmodified	_MFGLCCNKSLF_					0	0	0		ENST00000265350.8_2_6:41874346-41874502:-|nuORF	ENST00000265350.8_2_6:41874346-41874502:-|nuORF	ENST00000265350.8_2_6:41874346-41874502:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7894897460938	2	631.790155	1261.56576	-0.10783	-6.8128E-05	-0.66535	-0.00042036	-0.77318	-0.00048849	631.7896373912773	46.195	0.7142	46.195	45.782	46.496	0					54	24	3	0	0	0	0.36299	1	9201	9201		10.8	0.72558	1	90703			13117	5898	8669	8737	17796	17796					-0.05456360835432861
MFHANLGF	8	Unmodified	_MFHANLGF_					0	0	0		nc|ENSG00000274150|A8MWK0|FADS2B	nc|ENSG00000274150|A8MWK0|FADS2B	nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.7232971191406	2	468.723455	935.432358	-0.0034525	-1.6183E-06	0.14715	6.8973E-05	0.1437	6.7355E-05	468.7234804190364	86.638	0.46921	86.666	86.39	86.859	0.027573					32	21	2	0	0	0	0.53817	1	21308	21308		2.5775	2.5775	1	297860			13118	7625	8670	8738	17797	17797					-0.03794095834609834
MFHGERKL	8	Unmodified	_MFHGERKL_					0	0	0			REV__nc|ENSG00000148057|Q5T6J7-3|IDNK	REV__nc|ENSG00000148057|Q5T6J7-3|IDNK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2695617675781	2	509.268561	1016.52257	-0.41836	-0.00021306	2.2988	0.0011707	1.8804	0.00095762	509.7711511793631	16.873	0.11993	16.873	16.803	16.923	0					18	14	2	0	0	0	0.54081	1	813	813		0.79363	0	1	21834	+		13119	9581	8671	8739	17798	17798					0.014969534938245488
MFHGERKL	8	Unmodified	_MFHGERKL_					0	0	0			REV__nc|ENSG00000148057|Q5T6J7-3|IDNK	REV__nc|ENSG00000148057|Q5T6J7-3|IDNK	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	509.268561	1016.52257	-0.41836	-0.00021306	2.2988	0.0011707	1.8804	0.00095762	509.7711511793631	16.873	0.11993	16.873	16.803	16.923	0	-0.031991	0.0003377	NaN	0.79363	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21834	+		13120	9581	8671	8739							0.014969534938245488
MFHGERKL	8	Unmodified	_MFHGERKL_					0	0	0			REV__nc|ENSG00000148057|Q5T6J7-3|IDNK	REV__nc|ENSG00000148057|Q5T6J7-3|IDNK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.268561	1016.52257	0.19022	9.6872E-05	1.7326	0.00088235	1.9228	0.00097922	509.7707486975811	16.859	0.14102	16.937	16.87	17.011	0.077808	0.031991	-0.00023896	NaN	0.79363	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11449	+		13121	9581	8671	8739							0.014969534938245488
MFIEELVII	9	Unmodified	_MFIEELVII_					0	0	0			REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8317260742188	2	553.811936	1105.60932	0.21497	0.00011905	2.6445	0.0014646	2.8595	0.0015836	553.8145163610158	44.087	0.30568	44.176	44.029	44.335	0.088924					20	9	3	0	0	0	0.28587	1	8447	8447		8.5933	3.8373	1	73667	+		13122	10776	8672	8740	17799	17799					0.06073895205008739
MFLICVFCVAV	11	Unmodified	_MFLICVFCVAV_					0	0	0			REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.818115234375	2	622.815641	1243.61673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.11	1	104.11	103.61	104.61	0								0	0	0	0.33192	1	26780	26780		3.5965	0.31518	1		+		13123	12350	8673	8741	17800	17800					0.004665882094286644
MFLICVFCVAV	11	Unmodified	_MFLICVFCVAV_					0	0	0			REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8160400390625	2	622.815641	1243.61673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.63	1	104.63	104.13	105.13	0								0	0	0	0.33192	1	26931	26931		3.5965	0.60125	1		+		13124	12350	8673	8741	17801	17801					0.004665882094286644
MFLICVFCVAV	11	Unmodified	_MFLICVFCVAV_					0	0	0			REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8178100585938	2	622.815641	1243.61673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.92	1	104.92	104.42	105.42	0								0	0	0	0.33192	1	27012	27012		3.5965	0.31518	1		+		13125	12350	8673	8741	17802	17802					0.004665882094286644
MFLICVFCVAV	11	Unmodified	_MFLICVFCVAV_					0	0	0			REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.8861083984375	2	622.815641	1243.61673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.322	1	97.363	96.863	97.863	0.040855								0	0	0	0.33192	1	24578	24578		3.5965	0.31518	1		+		13126	12350	8673	8741	17803	17803					0.004665882094286644
MFLICVFCVAV	11	Unmodified	_MFLICVFCVAV_					0	0	0			REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.8176879882812	2	622.815641	1243.61673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.508	1	97.549	97.049	98.049	0.040855								0	0	0	0.33192	1	24635	24635		3.5965	0.31518	1		+		13127	12350	8673	8741	17804	17804					0.004665882094286644
MFLICVFCVAV	11	Unmodified	_MFLICVFCVAV_					0	0	0			REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.818115234375	2	622.815641	1243.61673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.85	1	104.88	104.38	105.38	0.034004								0	0	0	0.33192	1	26816	26816		3.5965	0.31518	1		+		13128	12350	8673	8741	17805	17805					0.004665882094286644
MFLYFLVI	8	Unmodified	_MFLYFLVI_					0	0	0		nc|ENSG00000139155|Q9NYB5-4|SLCO1C1;nc|ENSG00000139155|Q9NYB5-2|SLCO1C1;ENSG00000139155|ENST00000266509|SLCO1C1;nc|ENSG00000139155|Q9NYB5-3|SLCO1C1	nc|ENSG00000139155|Q9NYB5-4|SLCO1C1	nc|ENSG00000139155|Q9NYB5-4|SLCO1C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2929077148438	2	523.293182	1044.57181	-0.17356	-9.0823E-05	-0.25273	-0.00013225	-0.42629	-0.00022307	523.2929936595477	30.364	0.33493	30.44	30.228	30.563	0.075403					29	20	2	0	0	0	0.53257	1	4274	4274		6.3541	0	1	18736			13129	2951	8674	8742	17806	17806					0.05130848730050275
MFNKLHISEI	10	Unmodified	_MFNKLHISEI_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.2162170410156	3	411.221636	1230.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.48	1	48.56	48.06	49.06	0.080029								0	0	0	0.31515	1	9722	9722		15.739	0	1		+		13130	9920	8675	8743	17807	17807					0.036983166967957004
MFPLAILYF	9	Unmodified	_MFPLAILYF_					0	0	0			REV__ENST00000328902.9_1_7:150324506-150324674:-|nuORF	REV__ENST00000328902.9_1_7:150324506-150324674:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.8042602539062	2	557.803914	1113.59328	-0.17322	-9.662E-05	0.17372	9.6899E-05	0.0004995	2.7862E-07	557.8040516503951	20.855	0.40679	20.855	20.72	21.127	0					91	43	3	0	0	0	0.34646	1	1754	1754		0.6015	0	1	73953	+		13131	11417	8676	8744	17808	17808					0.04102233758794682
MFRWPAIS	8	Unmodified	_MFRWPAIS_					0	0	0			REV__ENST00000407450.1_1_6:118774123-118774444:-|nuORF	REV__ENST00000407450.1_1_6:118774123-118774444:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2795715332031	2	504.260205	1006.50586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.711	1	49.784	49.284	50.284	0.07312								0	0	0	0.3858	1	10094	10094		18.135	8.0611	1		+		13132	11770	8677	8745	17809	17809					0.002864526078610652
MFSQNDNINIL	11	Unmodified	_MFSQNDNINIL_					0	0	0		tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1	tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1	tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.21466064453125	3	436.879939	1307.61799	0.37367	0.00016325	-0.3315	-0.00014483	0.042169	1.8423E-05	437.21436951506513	103.45	0.92966	103.45	102.57	103.5	0					94	65	2	0	0	0	0.4167	1	26487	26487		0.50596	0.27011	1	173100			13133	13634	8678	8746	17810	17810					-0.023517828964486398
MFSSFYFIN	9	Unmodified	_MFSSFYFIN_					0	0	0			REV__ENSG00000166704|ENST00000551380|ZNF606	REV__ENSG00000166704|ENST00000551380|ZNF606	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.76123046875	2	578.26261	1154.51067	0.51997	0.00030068	-2.5713	-0.0014869	-2.0513	-0.0011862	578.2611730205716	64.242	0.17195	64.313	64.174	64.346	0.071014					6	5	2	0	0	0	0.259	1	14471	14471		1.6526	0.17072	1	85632	+		13134	10088	8679	8747	17811	17811					-0.06040708039995479
MFVGHATAL	9	Unmodified	_MFVGHATAL_					0	0	0		HCN1|p.Q398L|1|0.14|ENSG00000164588|chr5:45396529-45396529|T/A|missense_variant;HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant;HCN1|p.Q689Sfs*91|1|0.12|ENSG00000164588|chr5:45262529-45262529|G/-|frameshift_variant;ENSG00000164588|ENST00000303230|HCN1	HCN1|p.Q398L|1|0.14|ENSG00000164588|chr5:45396529-45396529|T/A|missense_variant	HCN1|p.Q398L|1|0.14|ENSG00000164588|chr5:45396529-45396529|T/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2558288574219	2	473.744388	945.474223	0.07741	3.6672E-05	3.3394	0.001582	3.4168	0.0016187	473.74647202091006	38.219	0.35011	38.219	38.076	38.426	0					14	11	2	0	0	0	0.31496	1	6744	6744		4.756	1.8668	1	16121			13135	4017	8680	8748	17812	17812					-0.0006954014609164005
MFYKHTRRK	9	Unmodified	_MFYKHTRRK_					0	0	0		ENSG00000104783|ENST00000648319|KCNN4	ENSG00000104783|ENST00000648319|KCNN4	ENSG00000104783|ENST00000648319|KCNN4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.901611328125	3	422.90112	1265.68153	0.13442	5.6848E-05	0.40885	0.0001729	0.54327	0.00022975	423.23544375274963	107.15	1.2112	107.15	106.39	107.6	0					183	117	2	0	0	0	0.26011	1	27695	27695		0.26902	0.033176	1	147420			13136	1429	8681	8749	17813	17813					0.059316671219448835
MGCLMVELE	9	Unmodified	_MGCLMVELE_					0	0	0			REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7301025390625	2	512.729232	1023.44391	0.41968	0.00021518	0.63502	0.0003256	1.0547	0.00054078	512.729476332578	74.719	0.47551	74.768	74.396	74.872	0.048546					41	16	4	0	0	0	0.21398	1	17646	17646		16.942	1.0951	1	409130	+		13137	8928	8682	8750	17814	17814					-0.06687402917782492
MGDKIWLPFP	10	Unmodified	_MGDKIWLPFP_					0	0	0		nc|ENSG00000117500|Q9Y3A6-2|TMED5;ENSG00000117500|ENST00000370282|TMED5	nc|ENSG00000117500|Q9Y3A6-2|TMED5	nc|ENSG00000117500|Q9Y3A6-2|TMED5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8780822753906	3	401.87921	1202.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.605	1	29.684	29.184	30.184	0.078287								0	0	0	0.33892	1	4059	4059		0.62683	0.063655	1				13138	2005	8683	8751	17815	17815					0.022598331564040564
MGDPHQQTL	9	Unmodified	_MGDPHQQTL_					0	0	0		ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENSG00000100296|ENST00000490103|THOC5;ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7373046875	2	513.737291	1025.46003	-0.088072	-4.5246E-05	-0.17977	-9.2354E-05	-0.26784	-0.0001376	513.7371001150883	30.452	0.42556	30.452	30.286	30.712	0					55	24	3	0	0	0	0.20162	1	4426	4426		18.373	8.99	1	80040			13139	1179	8684	8752	17816	17816					-0.05168237365001005
MGDPHQQTL	9	Unmodified	_MGDPHQQTL_					0	0	0		ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENSG00000100296|ENST00000490103|THOC5;ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	ENST00000475187.5_1_22:29932576-29945100:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.737060546875	2	513.737291	1025.46003	-0.060198	-3.0926E-05	-0.21439	-0.00011014	-0.27459	-0.00014106	513.7370824368693	30.409	0.50463	30.485	30.325	30.83	0.075403					67	31	3	0	0	0	0.30397	2	4325	4279;4325		6.2058	2.7366	1	59746			13140	1179	8684	8752	17817;17818	17818					-0.05168237365001005
MGEKELNPLL	10	Unmodified	_MGEKELNPLL_					0	0	0			REV__ENSG00000174125|ENST00000308979|TLR1	REV__ENSG00000174125|ENST00000308979|TLR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3262329101562	2	572.307549	1142.60055	0.54609	0.00031253	-1.2863	-0.00073615	-0.7402	-0.00042362	572.3068138836691	97.807	0.22023	97.848	97.737	97.957	0.040855					14	10	2	0	0	0	0.44496	1	24730	24730		5.7319	0	1	48409	+		13141	10337	8685	8753	17819	17819					0.03494921568517384
MGEMHMEYVL	10	Unmodified	_MGEMHMEYVL_					0	0	0			REV__ENST00000578921.5_1_18:9859447-9859570:+|nuORF	REV__ENST00000578921.5_1_18:9859447-9859570:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.2883605957031	3	413.845072	1238.51339	0.37529	0.00015531	1.4115	0.00058413	1.7868	0.00073944	414.18066068993403	92.627	0.49562	92.664	92.429	92.925	0.036522					22	17	2	0	0	0	0.31838	1	23193	23193		0.62683	0.12087	1	116610	+		13142	12545	8686	8754	17820	17820					-0.09632943969018015
MGGGGGGG	8	Unmodified	_MGGGGGGG_					0	0	0		ENST00000563748.5_1_15:34652212-34654781:-|nuORF	REV__nc|ENSG00000091527|Q9UKY7-3|CDV3	REV__nc|ENSG00000091527|Q9UKY7-3|CDV3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7501220703125	1	549.208572	548.201295	0.30737	0.00016881	3.7372	0.0020525	4.0445	0.0022213	549.2101839394331	60.524	0.28994	60.598	60.367	60.657	0.073421					12	9	2	0	0	0	0.3576	1	13370	13370		0.79363	0.79363	1	78538			13143	7168	8687	8755	17821	17821					-0.09087723816446669
MGLSFPEIEP	10	Unmodified	_MGLSFPEIEP_					0	0	0			REV__ENST00000563678.1_1_16:31714490-31715590:+|nuORF	REV__ENST00000563678.1_1_16:31714490-31715590:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7659912109375	2	560.273175	1118.5318	-0.14124	-7.9136E-05	3.2588	0.0018258	3.1175	0.0017467	560.2750562949016	41.008	0.22624	41.098	41.039	41.265	0.089645					12	8	2	0	0	0	0.43972	1	7484	7484		6.7232	0.99131	1	22667	+		13144	12491	8688	8756	17822	17822					-0.02272742731179278
MGLYRERVF	9	Unmodified	_MGLYRERVF_					0	0	0		ENST00000361464.7_1_10:103545820-103546054:-|nuORF	ENST00000361464.7_1_10:103545820-103546054:-|nuORF	ENST00000361464.7_1_10:103545820-103546054:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8078002929688	2	585.808051	1169.60155	0.38654	0.00022644	-1.2012	-0.00070368	-0.81467	-0.00047724	585.8072870088595	35.966	0.93592	35.966	35.675	36.611	0					66	36	2	0	0	0	0.34646	1	6239	6239		0.6015	0.076735	1	60286			13145	6162	8689	8757	17823	17823					0.023531807281187866
MGNHCSHM	8	Unmodified	_MGNHCSHM_					0	0	0		nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.6645812988281	2	458.664757	915.314962	0.09655	4.4284E-05	-0.72065	-0.00033054	-0.6241	-0.00028625	458.66461857420114	39.114	0.43944	39.201	38.994	39.433	0.086884					45	17	4	0	0	0	0.54097	1	6965	6965		0.69038	0	1	139090			13146	4175	8690	8758	17824	17824					-0.1460832003735959
MGPYYPAG	8	Unmodified	_MGPYYPAG_					0	0	0		chr6:31640306-31640474|105|15.21|0.84|4.18|-|2|BAG6,None|1	chr6:31640306-31640474|105|15.21|0.84|4.18|-|2|BAG6,None|1	chr6:31640306-31640474|105|15.21|0.84|4.18|-|2|BAG6,None|1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	428.1886901855469	2	428.188914	854.363275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.29	1	88.29	87.79	88.79	0								0	0	0	0.38822	1	21986	21986		2.8892	0	1				13147	174	8691	8759	17825	17825					-0.0697317985417385
MGVRGIHPY	9	Unmodified	_MGVRGIHPY_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2659912109375	2	515.268561	1028.52257	-0.31239	-0.00016096	-1.1678	-0.00060175	-1.4802	-0.00076272	515.267765655264	41.33	0.76023	41.42	41.108	41.869	0.089764					65	29	3	0	0	0	0.3354	1	7658	7658		2.0598	0.21551	1	270070	+		13148	10155	8692	8760	17826	17826					0.009449534938312354
MHGDVFNV	8	Unmodified	_MHGDVFNV_					0	0	0			REV__tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1	REV__tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7106628417969	2	459.710545	917.406537	0.37239	0.00017119	0.2672	0.00012283	0.63959	0.00029403	459.71055141138777	99.711	1.1317	99.754	99.446	100.58	0.042839					170	70	3	0	0	0	0.53494	4	25236	25236;25273;25319;25363		4.756	2.1785	1	11105000	+		13149	13158	8693	8761	17827;17828;17829;17830	17827					-0.05546990076879865
MHLFVSFILR	10	Unmodified	_MHLFVSFILR_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.52655029296875	3	421.574121	1261.70053	-0.032082	-1.3525E-05	0.43568	0.00018367	0.4036	0.00017015	421.57425439379085	45.073	0.82082	45.073	44.909	45.729	0					40	28	2	0	0	0	0.31843	1	8800	8800		1.5923	0	1	34546			13150	890	8694	8762	17831	17831					0.08015203693003059
MHLIQESVELS	11	Unmodified	_MHLIQESVELS_					0	0	0			REV__ENSG00000159753|ENST00000334583|CARMIL2	REV__ENSG00000159753|ENST00000334583|CARMIL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3427124023438	2	643.32647	1284.63839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.344	1	66.344	65.844	66.844	0								0	0	0	0.32823	1	15295	15295		4.897	0	1		+		13151	9834	8695	8763	17832	17832					0.00745387763367944
MHPGFGPPP	9	Unmodified	_MHPGFGPPP_					0	0	0			REV__ENST00000520132.1_1_5:150071315-150073858:-|nuORF	REV__ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.2750549316406	2	468.723455	935.432358	0.238	0.00011156	-0.57958	-0.00027166	-0.34157	-0.0001601	468.72314405315535	85.907	0.66003	85.932	85.631	86.291	0.025169					32	23	2	0	0	0	0.33356	1	21112	21112		2.3027	0	1	82396	+		13152	8274	8696	8764	17833	17833					-0.03794095834609834
MHRYQIWT	8	Unmodified	_MHRYQIWT_					0	0	0		CON__Q32PI4	CON__Q32PI4	CON__Q32PI4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.33056640625	2	567.779293	1133.54403	0.29157	0.00016555	3.7521	0.0021304	4.0437	0.0022959	567.7814137689174	86.308	0.17337	86.333	86.258	86.431	0.025177					6	5	2	0	0	0	0.3576	1	21237	21237		5.7604	2.4791	1	54391		+	13153	229	8697	8765	17834	17834					-0.017396614774725094
MHSSIEAVSSM	11	Unmodified	_MHSSIEAVSSM_					0	0	0			REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant	REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7591552734375	2	589.762649	1177.51074	0.403	0.00023767	-4.3116	-0.0025428	-3.9086	-0.0023051	589.7589601948729	56.137	2.3284	56.137	55.889	58.217	0					223	84	3	0	0	0	0.090663	6	12205	12205;12256;12307;12355;12404;12452		47.749	14.55	1	5486500	+		13154	9846	8698	8766	17835;17836;17837;17838;17839;17840	17835					-0.0709107610234696
MHSSIEAVSSM	11	Unmodified	_MHSSIEAVSSM_					0	0	0			REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant	REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7592163085938	2	589.762649	1177.51074	0.39279	0.00023165	-3.4503	-0.0020349	-3.0575	-0.0018032	589.7589000961185	56.113	2.4844	56.18	55.648	58.132	0.066448					260	93	5	0	0	0	0.090663	5	12038	12038;12084;12136;12183;12237		47.749	22.349	1	4997900	+		13155	9846	8698	8766	17841;17842;17843;17844;17845	17841					-0.0709107610234696
MHTFQDGLE	9	Unmodified	_MHTFQDGLE_					0	0	0		ENSG00000124602|ENST00000244565|UNC5CL	ENSG00000124602|ENST00000244565|UNC5CL	ENSG00000124602|ENST00000244565|UNC5CL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.237548828125	2	539.237124	1076.45969	0.31671	0.00017078	0.56591	0.00030516	0.88262	0.00047594	539.2372973121007	78.319	0.4424	78.319	78.125	78.568	0					36	14	4	0	0	0	0.30397	1	18961	18961		6.2058	0	1	229240			13156	2265	8699	8767	17846	17846					-0.07547657084865023
MHWLTELEIL	10	Unmodified	_MHWLTELEIL_					0	0	0		nc|ENSG00000115252|P54750-3|PDE1A;nc|ENSG00000115252|P54750-8|PDE1A;nc|ENSG00000115252|P54750-9|PDE1A;nc|ENSG00000115252|P54750-2|PDE1A;ENSG00000115252|ENST00000409365|PDE1A;nc|ENSG00000115252|P54750|PDE1A;nc|ENSG00000115252|P54750-7|PDE1A;nc|ENSG00000115252|P54750-4|PDE1A;nc|ENSG00000115252|P54750-5|PDE1A	nc|ENSG00000115252|P54750-3|PDE1A	nc|ENSG00000115252|P54750-3|PDE1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.8372192382812	2	642.836474	1283.65839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.018	1	75.062	74.562	75.562	0.044037								0	0	0	0.32245	1	17781	17781		14.838	0.93222	1				13157	1891	8700	8768	17847	17847					0.027911834939914115
MHWNCGRI	8	Unmodified	_MHWNCGRI_					0	0	0		nc|ENSG00000106328|Q9NQT6-2|FSCN3;ENSG00000106328|ENST00000265825|FSCN3	nc|ENSG00000106328|Q9NQT6-2|FSCN3	nc|ENSG00000106328|Q9NQT6-2|FSCN3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.1715393066406	2	508.731289	1015.44802	-0.085842	-4.3671E-05	-1.6249	-0.00082661	-1.7107	-0.00087028	508.73048176820214	32.308	0.38775	32.382	32.268	32.656	0.07378					39	21	3	0	0	0	0.3576	1	4878	4878		5.2307	0.47466	1	41088			13158	1518	8701	8769	17848	17848					-0.059081325891952474
MHYATELTL	9	Unmodified	_MHYATELTL_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7760009765625	2	539.765517	1077.51648	0.4327	0.00023355	0.43543	0.00023503	0.86812	0.00046858	539.7657620230185	91.143	0.93408	91.143	90.858	91.793	0					65	33	3	0	0	0	0.23216	1	22823	22823		14.838	1.7958	1	574000	+		13159	8093	8702	8770	17849	17849					-0.019176095283683026
MHYATELTL	9	Unmodified	_MHYATELTL_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7760620117188	2	539.765517	1077.51648	0.3222	0.00017391	0.62415	0.0003369	0.94636	0.00051081	539.7658531521479	91.191	0.94451	91.226	90.828	91.773	0.035446					68	33	3	0	0	0	0.10067	1	22660	22660		32.305	3.2239	1	562330	+		13160	8093	8702	8770	17850	17850					-0.019176095283683026
MIANDVHTL	9	Oxidation (M)	_M(Oxidation (M))IANDVHTL_		M(1)IANDVHTL		M(100)IANDVHTL	0	0	1		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2551879882812	2	515.255317	1028.49608	0.31326	0.00016141	-0.30338	-0.00015632	0.0098824	5.0919E-06	515.2551850606525	38.659	0.63029	38.659	38.426	39.057	0					51	23	3	0	0	0	0.0040167	1	6886	6886		103.42	59.647	1	155110			13161	1185	8703	8771	17851	17851		67			-0.01702780188156794
MIANDVHTL	9	Oxidation (M)	_M(Oxidation (M))IANDVHTL_		M(1)IANDVHTL		M(86)IANDVHTL	0	0	1		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2554931640625	2	515.255317	1028.49608	0.083119	4.2828E-05	0.15345	7.9066E-05	0.23657	0.00012189	515.2552667366929	39.465	1.1477	39.465	39.004	40.151	0					73	41	2	0	0	0	0.0046221	2	7118	7118;7170		86.332	48.156	1	166460			13162	1185	8703	8771	17852;17853	17852		67			-0.01702780188156794
MIANDVHTL	9	Oxidation (M)	_M(Oxidation (M))IANDVHTL_		M(1)IANDVHTL		M(66)IANDVHTL	0	0	1		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2551879882812	2	515.255317	1028.49608	0.37777	0.00019465	-0.37446	-0.00019294	0.0033075	1.7042E-06	515.2551670354461	38.569	0.74291	38.655	38.41	39.153	0.08688					52	27	3	0	0	0	0.010235	1	6733	6733		66.457	42.436	1	148160			13163	1185	8703	8771	17854	17854		67			-0.01702780188156794
MIANDVHTL	9	Oxidation (M)	_M(Oxidation (M))IANDVHTL_		M(1)IANDVHTL		M(73)IANDVHTL	0	0	1		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2553100585938	2	515.255317	1028.49608	0.1765	9.0944E-05	0.15942	8.214E-05	0.33592	0.00017308	515.2552751682075	39.398	0.93425	39.486	39.154	40.089	0.088562					69	37	3	0	0	0	0.0081278	1	6980	6980		72.968	43.886	1	150900			13164	1185	8703	8771	17855	17855		67			-0.01702780188156794
MIANDVHTL	9	Unmodified	_MIANDVHTL_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.73126220703125	2	507.257859	1012.50117	-0.19589	-9.9365E-05	-0.50037	-0.00025382	-0.69626	-0.00035318	507.257603589636	43.869	0.45314	43.869	43.663	44.116	0					22	15	2	0	0	0	0.15837	1	8474	8474		34.932	16.786	1	69922			13165	1185	8703	8772	17856	17856					-0.004584763255365942
MIANDVHTL	9	Unmodified	_MIANDVHTL_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7315979003906	2	507.257859	1012.50117	-0.048997	-2.4854E-05	-0.60835	-0.00030859	-0.65734	-0.00033344	507.2574360472796	43.828	0.7376	43.917	43.658	44.396	0.088924					29	25	2	0	0	0	0.2418	1	8332	8332		13.906	5.9959	1	70963			13166	1185	8703	8772	17857	17857					-0.004584763255365942
MIDASAIEL	9	Unmodified	_MIDASAIEL_					0	0	0			REV__ENST00000272163.8_1_1:225607117-225607493:-|nuORF	REV__ENST00000272163.8_1_1:225607117-225607493:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7467041015625	2	481.746793	961.479033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.789	1	45.789	45.289	46.289	0								0	0	0	0.23884	1	9041	9041		11.64	0	1		+		13167	11274	8704	8773	17858	17858					-0.003247007939762625
MIDDVEHLF	9	Unmodified	_MIDDVEHLF_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|80|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|80|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|80|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7622680664062	2	559.762975	1117.5114	0.43324	0.00024251	-2.4383	-0.0013649	-2.0051	-0.0011224	559.7616727280994	87.895	0.45786	87.925	87.709	88.167	0.030037					33	15	3	0	0	0	0.24365	1	21725	21725		13.508	0.97634	1	192110			13168	7383	8705	8774	17859	17859					-0.04265913390986498
MIEGLDVTII	10	Unmodified	_MIEGLDVTII_					0	0	0		tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7900390625	2	552.304475	1102.5944	0.68239	0.00037689	0.27345	0.00015103	0.95585	0.00052792	552.3047662845528	79.552	0.92244	79.552	79.157	80.079	0					42	31	2	0	0	0	0.38104	1	19413	19413		13.906	0.86358	1	190010			13169	13683	8706	8775	17860	17860					0.047204033370235265
MIFDHEVVFAT	11	Unmodified	_MIFDHEVVFAT_					0	0	0			REV__ENST00000510321.1_1_4:146044588-146044753:+|nuORF	REV__ENST00000510321.1_1_4:146044588-146044753:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.87933349609375	3	436.88128	1307.62201	0.2358	0.00010302	-3.8197	-0.0016688	-3.5839	-0.0015657	436.8790530235301	69.771	0.50494	69.832	69.667	70.172	0.060562					27	20	2	0	0	0	0.39824	1	16210	16210		4.7159	1.1289	1	39498	+		13170	9983	8707	8776	17861	17861					-0.019496934027529278
MIFSIPYII	9	Unmodified	_MIFSIPYII_					0	0	0		ENSG00000180185|ENST00000427358|FAHD1;nc|ENSG00000180185|Q6P587-2|FAHD1;nc|ENSG00000180185|Q6P587-1|FAHD1;nc|ENSG00000180185|Q6P587-3|FAHD1	ENSG00000180185|ENST00000427358|FAHD1	ENSG00000180185|ENST00000427358|FAHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.289306640625	2	548.809196	1095.60384	0.73117	0.00040127	0.8928	0.00048998	1.624	0.00089125	548.8097426765447	85.1	0.12067	85.123	85.035	85.156	0.023132					6	4	2	0	0	0	0.2298	1	20838	20838		16.942	2.3606	1	55273			13171	4801	8708	8777	17862	17862					0.05986216413202783
MIFVHLIIF	9	Unmodified	_MIFVHLIIF_					0	0	0		ENSG00000139679|ENST00000620633|LPAR6	ENSG00000139679|ENST00000620633|LPAR6	ENSG00000139679|ENST00000620633|LPAR6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2976684570312	2	566.833006	1131.65146	0.43303	0.00024546	-3.1138	-0.001765	-2.6808	-0.0015196	566.8327314782157	82.638	0.28238	82.638	82.509	82.792	0					14	9	2	0	0	0	0.24749	1	20290	20290		9.3474	0	1	42630			13172	2980	8709	8778	17863	17863					0.09089915404047133
MIFYLLEIF	9	Unmodified	_MIFYLLEIF_					0	0	0		ENSG00000109182|ENST00000226432|CWH43;SLAIN2-CWH43|2|fusion	ENSG00000109182|ENST00000226432|CWH43	ENSG00000109182|ENST00000226432|CWH43	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.3211059570312	2	594.822304	1187.63005	-0.10169	-6.0487E-05	1.1624	0.00069144	1.0607	0.00063095	594.8229596932448	107.37	0.2241	107.37	107.29	107.52	0					23	21	2	0	0	0	0.25051	1	27715	27715		7.9102	1.187	1	153030			13173	1630	8710	8779	17864	17864					0.043744855846625796
MIGLGALVFSL	11	Unmodified	_MIGLGALVFSL_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8138427734375	2	560.825378	1119.6362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.043	1	84.064	83.564	84.564	0.021744								0	0	0	0.30267	1	20533	20533		13.906	0.39817	1				13174	4562	8711	8780	17865	17865					0.08117003816209944
MIGLTSTHSW	10	Unmodified	_MIGLTSTHSW_					0	0	0			REV__ENST00000537120.5_1_11:61091345-61100440:-|nuORF	REV__ENST00000537120.5_1_11:61091345-61100440:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2975463867188	2	566.776416	1131.53828	0.47141	0.00026719	-1.6151	-0.00091542	-1.1437	-0.00064823	567.2775647979291	99.248	0.83566	99.291	98.846	99.682	0.042839					85	55	2	0	0	0	0.31496	1	25226	25226		13.906	0.86358	1	69533	+		13175	12389	8712	8781	17866	17866					-0.022228047797852923
MIGLTSTHSW	10	Unmodified	_MIGLTSTHSW_					0	0	0			REV__ENST00000537120.5_1_11:61091345-61100440:-|nuORF	REV__ENST00000537120.5_1_11:61091345-61100440:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2974243164062	2	566.776416	1131.53828	0.31904	0.00018082	-1.3962	-0.00079136	-1.0772	-0.00061053	567.2779961713165	104.05	0.54572	104.09	103.79	104.34	0.03791					68	54	2	0	0	0	0.31643	1	26620	26620		9.3831	1.473	1	70235	+		13176	12389	8712	8781	17867	17867					-0.022228047797852923
MIGSEFFLL	9	Unmodified	_MIGSEFFLL_					0	0	0		ENSG00000279301|ENST00000641193|OR2T11	ENSG00000279301|ENST00000641193|OR2T11	ENSG00000279301|ENST00000641193|OR2T11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7844848632812	2	528.775354	1055.53615	0.39403	0.00020836	-0.97183	-0.00051388	-0.5778	-0.00030552	528.7750736008518	91.142	2.1639	91.142	90.549	92.713	0					237	80	6	0	0	0	0.11022	1	23235	23235		30.225	5.5509	1	3510600			13177	5768	8713	8782	17868	17868					0.010607664823965024
MIHDLETLDM	10	Unmodified	_MIHDLETLDM_					0	0	0			REV__ENSG00000179833|ENST00000313349|SERTAD2	REV__ENSG00000179833|ENST00000313349|SERTAD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.8219299316406	3	406.522875	1216.5468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.485	1	56.551	56.051	57.051	0.066452								0	0	0	0.33711	1	12153	12153		3.5871	0.5148	1		+		13178	10488	8714	8783	17869	17869					-0.052816189254826895
MIHEPEPHI	9	Unmodified	_MIHEPEPHI_					0	0	0		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7714233398438	2	551.771134	1101.52771	0.3982	0.00021971	-0.12932	-7.1354E-05	0.26888	0.00014836	551.7710473871629	37.672	1.0488	37.672	37.283	38.332	0					75	36	3	0	0	0	0.065541	4	6591	6544;6591;6640;6657		39.957	23.015	1	203820			13179	197	8715	8784	17870;17871;17872;17873	17871					-0.018987874342428768
MIHEPEPHI	9	Unmodified	_MIHEPEPHI_					0	0	0		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7713012695312	2	551.771134	1101.52771	0.45905	0.00025329	0.04763	2.6281E-05	0.50668	0.00027957	551.7709753581275	37.516	1.0977	37.601	37.162	38.26	0.084476					80	39	3	0	0	0	0.033885	2	6452	6452;6490		48.346	29.089	1	190110			13180	197	8715	8784	17874;17875	17874					-0.018987874342428768
MIHGGEIQQT	10	Unmodified	_MIHGGEIQQT_					0	0	0		ENST00000471892.6_1_5:137503584-137506561:-|nuORF;nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;ENSG00000112983|ENST00000254900|BRD8	ENST00000471892.6_1_5:137503584-137506561:-|nuORF	ENST00000471892.6_1_5:137503584-137506561:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2899169921875	2	557.271498	1112.52844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.849	1	72.902	72.402	73.402	0.052574								0	0	0	0.33156	1	17121	17121		10.074	0.72649	1				13181	1782	8716	8785	17876	17876					-0.02331992785161674
MIHGVWNYN	9	Unmodified	_MIHGVWNYN_					0	0	0		ATP8A1|p.A849V|1|0.24|ENSG00000124406|chr4:42464763-42464763|G/A|missense_variant	ATP8A1|p.A849V|1|0.24|ENSG00000124406|chr4:42464763-42464763|G/A|missense_variant	ATP8A1|p.A849V|1|0.24|ENSG00000124406|chr4:42464763-42464763|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7874755859375	2	567.263476	1132.5124	0.24953	0.00014155	-0.24961	-0.0001416	-8.1979E-05	-4.6504E-08	567.2627454188839	82.98	0.16898	83.002	82.931	83.1	0.021744					9	5	2	0	0	0	0.2404	1	20221	20221		13.508	0	1	53696			13182	71	8717	8786	17877	17877					-0.04855654231414519
MIHPYVIDT	9	Unmodified	_MIHPYVIDT_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2257080078125	2	544.775885	1087.53722	0.068132	3.7117E-05	-3.5557	-0.0019371	-3.4876	-0.0018999	544.7740304075215	34.722	0.31908	34.722	34.535	34.854	0					21	12	2	0	0	0	0.25845	1	5730	5730		2.0598	0.57785	1	24035			13183	348	8718	8787	17878	17878					-0.003050191486863696
MIHYMVLI	8	Unmodified	_MIHYMVLI_					0	0	0		ENST00000486235.5_1_3:119165863-119180852:-|nuORF;ENSG00000176142|ENST00000319172|TMEM39A	ENST00000486235.5_1_3:119165863-119180852:-|nuORF	ENST00000486235.5_1_3:119165863-119180852:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2918395996094	2	510.274467	1018.53438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.725	1	83.725	83.225	84.225	0								0	0	0	0.38822	1	20597	20597		6.3541	0	1				13184	4651	8719	8788	17879	17879					0.025854341928038593
MIIEDETEF	9	Oxidation (M)	_M(Oxidation (M))IIEDETEF_		M(1)IIEDETEF		M(52)IIEDETEF	0	0	1		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.769287109375	2	571.74973	1141.48491	0.28514	0.00016303	0.76299	0.00043624	1.0481	0.00059927	571.7498271329339	61.85	0.73486	61.85	61.63	62.365	0					67	31	3	0	0	0	0.028398	2	13936	13915;13936		52.268	34.381	1	333950			13185	2838	8720	8789	17880;17881	17881		183			-0.08017647072961154
MIIEDETEF	9	Oxidation (M)	_M(Oxidation (M))IIEDETEF_		M(1)IIEDETEF		M(48)IIEDETEF	0	0	1		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7701416015625	2	571.74973	1141.48491	0.28874	0.00016509	1.4071	0.00080449	1.6958	0.00096958	571.7495938344495	61.71	0.81308	61.784	61.637	62.451	0.073421					87	35	3	0	0	0	0.033885	1	13802	13802		48.346	12.302	1	346950			13186	2838	8720	8789	17882	17882		183			-0.08017647072961154
MIILIGCAFF	10	Unmodified	_MIILIGCAFF_					0	0	0		ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.765380859375	2	564.303224	1126.5919	0.56645	0.00031965	-1.4512	-0.0008189	-0.88472	-0.00049925	564.3024053719289	97.965	0.36849	98.006	97.848	98.216	0.040855					25	18	2	0	0	0	0.31771	1	24817	24817		4.3292	0.38484	1	107560			13187	6272	8721	8790	17883	17883					0.03366276398355694
MIILIGCAFF	10	Unmodified	_MIILIGCAFF_					0	0	0		ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	564.303224	1126.5919	0.56226	0.00031728	-1.0409	-0.0005874	-0.47868	-0.00027012	564.3025526585278	98.03	0.29783	98.03	97.839	98.137	0	0.011914	0.00021208	NaN	4.3292	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62616			13188	6272	8721	8790							0.03366276398355694
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(210)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.776123046875	2	547.775551	1093.53655	0.84835	0.0004647	-0.18157	-9.9458E-05	0.66678	0.00036525	547.775496197122	81.422	1.0227	81.422	80.931	81.954	0					129	34	5	0	0	0	1.0367E-17	5	19845	19845;19887;19930;19977;20018		205.82	116.39	1	4452400			13189	2544	8722	8791	17884;17885;17886;17887;17888	17884		161			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(210)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7759399414062	2	547.775551	1093.53655	0.57917	0.00031726	-0.38929	-0.00021325	0.18988	0.00010401	547.7755406817462	82.461	2.462	82.461	81.78	84.242	0					272	85	4	0	0	0	1.0367E-17	8	20198	20098;20148;20198;20239;20282;20584;20631;20675		205.82	116.39	1	9420200			13190	2544	8722	8791	17889;17890;17891;17892;17893;17894;17895;17896	17891		161			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(55)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7747802734375	2	547.775551	1093.53655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.234	1	85.234	84.734	85.734	0								0	0	0	0.035211	1	21054	21054		54.774	33.027	1				13191	2544	8722	8791	17897	17897		161			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(42)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7761840820312	2	547.775551	1093.53655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.009	1	86.009	85.509	86.509	0								0	0	0	0.071558	1	21292	21292		42.095	28.587	1				13192	2544	8722	8791	17898	17898		161			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(44)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3082275390625	2	547.775551	1093.53655	0.82206	0.0004503	-1.8347	-0.001005	-1.0126	-0.00055468	548.2746885584326	84.572	0.68018	84.572	84.452	85.132	0					53	31	2	0	0	0	0.10264	1	20912	20912		43.858	23.405	1	267780			13193	2544	8722	8791	17899	17899		161			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(210)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7760620117188	2	547.775551	1093.53655	0.55423	0.00030359	0.082774	4.5342E-05	0.637	0.00034894	547.7756326724086	81.394	1.0212	81.416	80.971	81.992	0.021866					115	36	4	0	0	0	1.0367E-17	5	19681	19681;19723;19760;19812;19862		205.82	116.39	1	4002000			13194	2544	8722	8791	17900;17901;17902;17903;17904	17900		161			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(210)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7759399414062	2	547.775551	1093.53655	0.37088	0.00020316	-0.23893	-0.00013088	0.13195	7.2277E-05	547.7756712217896	82.425	2.4744	82.447	81.875	84.35	0.021744					303	90	5	0	0	0	1.0367E-17	9	20023	19929;19976;20023;20072;20116;20160;20405;20506;20604		205.82	116.39	1	11295000			13195	2544	8722	8791	17905;17906;17907;17908;17909;17910;17911;17912;17913	17907		161			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(42)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.775634765625	2	547.775551	1093.53655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.962	1	85.987	85.487	86.487	0.025169								0	0	0	0.071558	1	21120	21120		42.095	28.587	1				13196	2544	8722	8791	17914	17914		161			-0.0064785858842242305
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7783203125	2	539.778093	1077.54163	0.50785	0.00027413	0.050255	2.7126E-05	0.55811	0.00030125	539.77807955519	88.242	1.4412	88.242	87.948	89.39	0					122	57	4	0	0	0	9.568500000000001E-24	5	22000	21919;21955;22000;22043;22088		214.7	105.08	1	3155200			13197	2544	8722	8792	17915;17916;17917;17918;17919	17917					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7783813476562	2	539.778093	1077.54163	0.48514	0.00026187	0.020814	1.1235E-05	0.50595	0.0002731	539.7780722713561	88.15	1.6652	88.18	87.906	89.571	0.030037					180	64	5	0	0	0	7.1494E-32	7	21797	21753;21797;21848;21895;21941;22033;22069		234.68	125.05	1	3172600			13198	2544	8722	8792	17920;17921;17922;17923;17924;17925;17926	17921					0.005964452741864079
MILPVGAESF	10	Unmodified	_MILPVGAESF_					0	0	0		nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000111674|P09104-2|ENO2	nc|ENSG00000111674|P09104-2|ENO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7380981445312	2	532.27826	1062.54197	0.50365	0.00026808	-3.4032	-0.0018114	-2.8995	-0.0015434	532.2762285539945	55.652	0.16905	55.652	55.551	55.72	0					6	5	2	0	0	0	0.31643	1	12011	12011		9.3831	1.473	1	39134			13199	1719	8723	8793	17927	17927					0.013198649940704854
MILRRVKKLFN	11	Unmodified	_MILRRVKKLFN_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2992248535156	3	473.298991	1416.87514	-0.18108	-8.5703E-05	0.771	0.00036491	0.58992	0.00027921	473.29919705731174	105.34	0.4422	105.34	105.14	105.58	0					86	46	3	0	0	0	0.4185	1	27105	27105		0.094841	0.011491	1	91628	+		13200	10775	8724	8794	17928	17928					0.18338203838197842
MILRRVKKLFN	11	Unmodified	_MILRRVKKLFN_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	473.298991	1416.87514	0.038917	1.8419E-05	0.64847	0.00030692	0.68739	0.00032534	473.29920615727144	105.34	0.46474	105.38	105.1	105.57	0.034004	0.017365	-6.9186E-05	NaN	0.094841	83	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146170	+		13201	10775	8724	8794							0.18338203838197842
MINSHVEYH	9	Unmodified	_MINSHVEYH_					0	0	0		sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.25927734375	2	565.258391	1128.50223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.216	1	34.292	33.792	34.792	0.076244								0	0	0	0.2927	1	5432	5432		0.52476	0	1				13202	13381	8725	8795	17929	17929					-0.05688261956674978
MIPLCVPLP	9	Unmodified	_MIPLCVPLP_					0	0	0			REV__ENSG00000069764|ENST00000438167|PLA2G10	REV__ENSG00000069764|ENST00000438167|PLA2G10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7767639160156	2	491.776842	981.539131	0.2983	0.0001467	-0.73932	-0.00036358	-0.44102	-0.00021689	491.7765027105031	68.701	0.4949	68.763	68.559	69.054	0.062126					25	18	2	0	0	0	0.33356	1	15921	15921		2.3027	0	1	88715	+		13203	8140	8726	8796	17930	17930					0.04762318335554028
MIPLCVPLP	9	Unmodified	_MIPLCVPLP_					0	0	0			REV__ENSG00000069764|ENST00000438167|PLA2G10	REV__ENSG00000069764|ENST00000438167|PLA2G10	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	491.776842	981.539131	0.47829	0.00023521	-0.9649	-0.00047451	-0.48661	-0.0002393	491.776266807206	68.775	0.54662	68.775	68.558	69.104	0	0.0060963	-0.00013813	NaN	2.3027	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104810	+		13204	8140	8726	8796							0.04762318335554028
MIPLWAGVL	9	Unmodified	_MIPLWAGVL_					0	0	0			REV__tr|U7SUB6|U7SUB6_FUSNUFormate/nitritetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01175PE=3SV=1	REV__tr|U7SUB6|U7SUB6_FUSNUFormate/nitritetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01175PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2901916503906	2	500.288431	998.562309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.939	1	84.939	84.439	85.439	0								0	0	0	0.2699	1	20966	20966		5.2307	0.90143	1		+		13205	13192	8727	8797	17931	17931					0.06297080444539915
MIQYFKEYNEN	11	Unmodified	_MIQYFKEYNEN_					0	0	0			REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.5586853027344	3	493.558865	1477.65477	-0.13878	-6.8498E-05	-0.7168	-0.00035378	-0.85559	-0.00042228	493.5585647993397	23.715	0.85758	23.715	23.524	24.381	0					198	79	4	0	0	0	0.41448	1	2450	2450		1.0136	0.55906	1	212020	+		13206	13109	8728	8798	17932	17932					-0.06495531070549987
MIQYFKEYNEN	11	Unmodified	_MIQYFKEYNEN_					0	0	0			REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	493.558865	1477.65477	-0.13878	-6.8498E-05	-0.7168	-0.00035378	-0.85559	-0.00042228	493.5585647993397	23.715	0.85758	23.715	23.524	24.381	0	0.052816	-5.6369E-05	NaN	1.0136	198	79	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212020	+		13207	13109	8728	8798							-0.06495531070549987
MIQYFKEYNEN	11	Unmodified	_MIQYFKEYNEN_					0	0	0			REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	493.558865	1477.65477	0.071681	3.5379E-05	-0.65899	-0.00032525	-0.58731	-0.00028987	493.5585926767825	23.509	0.50018	23.609	23.42	23.92	0.099739	-0.052816	2.9225E-05	NaN	1.0136	153	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265510	+		13208	13109	8728	8798							-0.06495531070549987
MIRELCRGF	9	Unmodified	_MIRELCRGF_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3270263671875	2	562.788804	1123.56305	0.4361	0.00024543	-3.0703	-0.0017279	-2.6342	-0.0014825	562.7864368628575	74.902	0.80081	74.946	74.669	75.47	0.044044					45	28	2	0	0	0	0.24635	1	17746	17746		10.824	2.2306	1	384660			13209	2614	8729	8799	17933	17933					0.006215518219278238
MIRELCRGF	9	Unmodified	_MIRELCRGF_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.788804	1123.56305	0.48866	0.00027501	-3.8746	-0.0021806	-3.3859	-0.0019056	562.7865024768508	74.835	0.36813	74.835	74.69	75.058	0	-0.055681	-0.000195	NaN	10.824	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300660			13210	2614	8729	8799							0.006215518219278238
MIRFLHQI	8	Unmodified	_MIRFLHQI_					0	0	0		ENST00000347055.3_1_2:88328059-88333697:-|nuORF	ENST00000347055.3_1_2:88328059-88333697:-|nuORF	ENST00000347055.3_1_2:88328059-88333697:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3023681640625	2	529.302404	1056.59026	0.60581	0.00032066	-1.2726	-0.00067357	-0.66675	-0.00035291	529.3018508350023	85.174	0.98727	85.174	84.818	85.806	0					55	39	2	0	0	0	0.45077	1	21081	21081		19.439	3.5918	1	176100			13211	6103	8730	8800	17934	17934					0.06422403424630829
MIRFLHQI	8	Unmodified	_MIRFLHQI_					0	0	0		ENST00000347055.3_1_2:88328059-88333697:-|nuORF	ENST00000347055.3_1_2:88328059-88333697:-|nuORF	ENST00000347055.3_1_2:88328059-88333697:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3016967773438	2	529.302404	1056.59026	0.31409	0.00016625	-1.0913	-0.00057762	-0.77719	-0.00041137	529.8033333046678	82.979	0.34116	83	82.823	83.164	0.021744					17	11	2	0	0	0	0.52924	1	20243	20243		8.5933	8.5933	1	67653			13212	6103	8730	8800	17935	17935					0.06422403424630829
MIRKGTKTI	9	Unmodified	_MIRKGTKTI_					0	0	0			REV__nc|ENSG00000211750|A0A075B6N3|TRBV24-1	REV__nc|ENSG00000211750|A0A075B6N3|TRBV24-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7431030273438	2	524.320794	1046.62703	0.15324	8.0347E-05	-3.1569	-0.0016552	-3.0037	-0.0015749	524.3189236824007	50.961	0.44579	50.961	50.762	51.208	0					25	14	2	0	0	0	0.25174	1	10626	10626		7.2892	2.5332	1	79274	+		13213	12880	8731	8801	17936	17936					0.1055865525054287
MITCFRYFF	9	Unmodified	_MITCFRYFF_					0	0	0		ENST00000504016.1_1_5:32591723-32601162:+|nuORF	ENST00000504016.1_1_5:32591723-32601162:+|nuORF	ENST00000504016.1_1_5:32591723-32601162:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.55377197265625	3	409.861162	1226.56166	0.72722	0.00029806	-1.5693	-0.00064321	-0.84212	-0.00034515	409.86033617941933	70.322	0.32416	70.322	70.067	70.391	0					14	12	2	0	0	0	0.25458	1	16454	16454		5.7319	1.5423	1	35666			13214	6880	8732	8802	17937	17937					-0.042560822668519904
MITDLEERL	9	Oxidation (M)	_M(Oxidation (M))ITDLEERL_		M(1)ITDLEERL		M(150)ITDLEERL	0	0	1		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.286865234375	2	568.286814	1134.55907	0.1778	0.00010104	-0.051801	-2.9438E-05	0.126	7.1603E-05	568.286793321309	53.23	0.84612	53.23	52.729	53.575	0					109	33	4	0	0	0	1.0657E-05	4	11307	11215;11265;11307;11349		148.27	72.507	1	1989700			13215	1188	8733	8803	17938;17939;17940;17941	17940		68			-0.002822591907943206
MITDLEERL	9	Oxidation (M)	_M(Oxidation (M))ITDLEERL_		M(1)ITDLEERL		M(160)ITDLEERL	0	0	1		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2869873046875	2	568.286814	1134.55907	0.4583	0.00026045	-0.28345	-0.00016108	0.17485	9.9365E-05	568.2866864618304	53.962	1.5499	53.962	53.49	55.04	0					168	61	5	0	0	0	8.8922E-09	6	11541	11496;11541;11586;11629;11684;11735		160.69	75.048	1	2443000			13216	1188	8733	8803	17942;17943;17944;17945;17946;17947	17943		68			-0.002822591907943206
MITDLEERL	9	Oxidation (M)	_M(Oxidation (M))ITDLEERL_		M(1)ITDLEERL		M(150)ITDLEERL	0	0	1		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.286865234375	2	568.286814	1134.55907	0.34324	0.00019506	-0.27259	-0.00015491	0.070655	4.0152E-05	568.2866549031563	53.164	0.82731	53.229	52.75	53.578	0.065426					128	39	4	0	0	0	1.0657E-05	5	11106	11065;11106;11148;11191;11236		148.27	72.507	1	1506500			13217	1188	8733	8803	17948;17949;17950;17951;17952	17949		68			-0.002822591907943206
MITDLEERL	9	Oxidation (M)	_M(Oxidation (M))ITDLEERL_		M(1)ITDLEERL		M(140)ITDLEERL	0	0	1		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2869262695312	2	568.286814	1134.55907	0.45725	0.00025985	-0.15223	-8.6512E-05	0.30501	0.00017333	568.2867140594545	53.861	1.5342	53.926	53.555	55.089	0.065216					180	69	4	0	0	0	0.00021732	6	11408	11363;11408;11459;11503;11549;11613		136.39	69.935	1	1969500			13218	1188	8733	8803	17953;17954;17955;17956;17957;17958	17954		68			-0.002822591907943206
MITDLEERL	9	Unmodified	_MITDLEERL_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2891235351562	2	560.289356	1118.56416	0.065637	3.6775E-05	0.17502	9.8065E-05	0.24066	0.00013484	560.2893829475084	58.451	0.6465	58.451	58.256	58.903	0					76	23	4	0	0	0	0.010553	1	12933	12933		65.474	31.072	1	1097900			13219	1188	8733	8804	17959	17959					0.009620446718372477
MITDLEERL	9	Unmodified	_MITDLEERL_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2886352539062	2	560.289356	1118.56416	0.074497	4.174E-05	-0.22304	-0.00012497	-0.14854	-8.3226E-05	560.2887785469767	59.003	0.34579	59.003	58.873	59.219	0					19	12	2	0	0	0	0.1646	1	13072	13072		22.658	6.8109	1	198870			13220	1188	8733	8804	17960	17960					0.009620446718372477
MITDLEERL	9	Unmodified	_MITDLEERL_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.289306640625	2	560.289356	1118.56416	0.33044	0.00018514	-0.012423	-6.9605E-06	0.31802	0.00017818	560.2892945896488	58.331	0.78517	58.402	58.184	58.969	0.070477					88	27	6	0	0	0	0.0017715	1	12697	12697		100.09	42.369	1	1277900			13221	1188	8733	8804	17961	17961					0.009620446718372477
MIVDPLRSGF	10	Unmodified	_MIVDPLRSGF_					0	0	0		ENST00000484891.1_1_20:1115545-1145721:+|nuORF;ENSG00000125818|ENST00000335877|PSMF1	ENST00000484891.1_1_20:1115545-1145721:+|nuORF	ENST00000484891.1_1_20:1115545-1145721:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.329833984375	2	567.802434	1133.59032	0.45796	0.00026003	-2.0181	-0.0011459	-1.5602	-0.00088587	567.8017446171466	83.545	0.84854	83.545	82.9	83.749	0					29	28	2	0	0	0	0.31585	1	20542	20542		10.824	6.0679	1	45880			13222	2312	8734	8805	17962	17962					0.02886358633963937
MIVGIFALCW	10	Unmodified	_MIVGIFALCW_					0	0	0		ENSG00000170425|ENST00000304222|ADORA2B;ENST00000582124.1_1_17:15877924-15878653:+|nuORF	ENSG00000170425|ENST00000304222|ADORA2B	ENSG00000170425|ENST00000304222|ADORA2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.3090209960938	2	576.800848	1151.58714	0.61652	0.00035561	-1.1728	-0.00067646	-0.55627	-0.00032086	576.8000477403915	70.665	0.96229	70.725	70.477	71.439	0.060562					100	36	3	0	0	0	0.2649	1	16584	16584		32.117	10.527	1	465440			13223	4391	8735	8806	17963	17963					0.01741392255576102
MIVKKLPY	8	Unmodified	_MIVKKLPY_					0	0	0		CLCNKA|p.I524M|1|0.22|ENSG00000186510|chr1:16030624-16030624|C/G|missense_variant	CLCNKA|p.I524M|1|0.22|ENSG00000186510|chr1:16030624-16030624|C/G|missense_variant	CLCNKA|p.I524M|1|0.22|ENSG00000186510|chr1:16030624-16030624|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.3042297363281	2	496.304081	990.59361	0.44703	0.00022186	-0.32399	-0.0001608	0.12303	6.1062E-05	496.3037811663986	79.627	0.77665	79.653	79.415	80.191	0.026428					36	27	2	0	0	0	0.54081	1	19210	19210		0.79363	0	1	135190			13224	199	8736	8807	17964	17964					0.09793653478629949
MIWCDIVL	8	Unmodified	_MIWCDIVL_					0	0	0			REV__ENST00000480770.5_3_19:12241465-12247683:-|nuORF	REV__ENST00000480770.5_3_19:12241465-12247683:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.77020263671875	2	496.750824	991.487096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.883	1	73.883	73.383	74.383	0								0	0	0	0.38822	1	17591	17591		10.183	2.2732	1		+		13225	12085	8737	8808	17965	17965					-0.008988450782112523
MKDPDDHTV	9	Unmodified	_MKDPDDHTV_					0	0	0		ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7646484375	2	529.234581	1056.45461	-0.033297	-1.7622E-05	-0.14142	-7.4845E-05	-0.17472	-9.2466E-05	529.2346920304856	25.311	0.10843	25.407	25.322	25.431	0.096073					11	8	2	0	0	0	0.25699	1	2794	2794		3.5965	0	1	9921.8			13226	1173	8738	8809	17966	17966					-0.07135960947516651
MKDQSINR	8	Unmodified	_MKDQSINR_					0	0	0			REV__CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	REV__CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.77728271484375	2	496.253108	990.491664	-0.038567	-1.9139E-05	-0.91467	-0.00045391	-0.95324	-0.00047305	496.25142748292393	27.024	0.1113	27.024	26.974	27.085	0					11	8	2	0	0	0	0.3576	1	3423	3423		2.0598	0	1	12130	+		13227	7860	8739	8810	17967	17967					-0.003962446110790552
MKEWTVELK	9	Unmodified	_MKEWTVELK_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.3448486328125	2	582.310092	1162.60563	0.45453	0.00026468	0.66328	0.00038623	1.1178	0.00065091	582.3105596173774	58.327	0.21488	58.397	58.231	58.446	0.070477					11	7	2	0	0	0	0.20194	1	12721	12721		24.021	2.4836	1	106770	+		13228	7980	8740	8811	17968	17968					0.030832254311462748
MKFQALQEF	9	Unmodified	_MKFQALQEF_					0	0	0			REV__nc|ENSG00000143921|Q9H221-2|ABCG8	REV__nc|ENSG00000143921|Q9H221-2|ABCG8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2750854492188	2	571.289159	1140.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.355	1	80.379	79.879	80.879	0.023605								0	0	0	0.22204	1	19411	19411		14.838	0.93222	1		+		13229	9480	8741	8812	17969	17969					-0.0008933025735586853
MKFSNSIGNS	10	Unmodified	_MKFSNSIGNS_					0	0	0		ERICH3|p.R210S|1|0.41|ENSG00000178965|chr1:74631902-74631902|C/A|missense_variant	ERICH3|p.R210S|1|0.41|ENSG00000178965|chr1:74631902-74631902|C/A|missense_variant	ERICH3|p.R210S|1|0.41|ENSG00000178965|chr1:74631902-74631902|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.757568359375	2	542.758223	1083.50189	0.071853	3.8999E-05	0.014531	7.8866E-06	0.086384	4.6885E-05	542.7581825867617	34.518	1.0617	34.518	34.356	35.417	0					61	39	2	0	0	0	0.46208	1	5825	5825		2.4985	0.43874	1	353990			13230	7332	8742	8813	17970	17970					-0.03651681676501539
MKHRDMMDF	9	Unmodified	_MKHRDMMDF_					0	0	0		ENST00000339447.8_1_X:74291469-74291499:-|nuORF	ENST00000339447.8_1_X:74291469-74291499:-|nuORF	ENST00000339447.8_1_X:74291469-74291499:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7717895507812	2	605.761929	1209.5093	0.99027	0.00059987	-0.65437	-0.00039639	0.33591	0.00020348	606.2637619952526	66.912	0.14691	66.912	66.782	66.929	0					6	4	2	0	0	0	0.25376	1	15440	15440		6.2058	2.6093	1	82038			13231	6082	8743	8814	17971	17971					-0.087069886720883
MKIRFKGFIR	10	Unmodified	_MKIRFKGFIR_					0	0	0		ENST00000315796.4_1_2:172928508-172928583:+|nuORF	ENST00000315796.4_1_2:172928508-172928583:+|nuORF	ENST00000315796.4_1_2:172928508-172928583:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.597412109375	3	432.597149	1294.76962	0.40571	0.00017551	0.36028	0.00015586	0.766	0.00033137	432.59721652219514	102.75	0.93974	102.75	102.41	103.35	0					166	63	4	0	0	0	0.47199	2	26352	26352;26390		0.62683	0.62683	1	722990			13232	6017	8744	8815	17972;17973	17972					0.13402287712551697
MKIRFKGFIR	10	Unmodified	_MKIRFKGFIR_					0	0	0		ENST00000315796.4_1_2:172928508-172928583:+|nuORF	ENST00000315796.4_1_2:172928508-172928583:+|nuORF	ENST00000315796.4_1_2:172928508-172928583:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	432.597149	1294.76962	0.26643	0.00011526	0.50387	0.00021797	0.77029	0.00033323	432.5972777972124	102.73	0.74429	102.77	102.46	103.2	0.040916	0.0091044	7.8661E-05	NaN	0.62683	181	59	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	537240			13233	6017	8744	8815							0.13402287712551697
MKMKKFQIPV	10	Unmodified	_MKMKKFQIPV_					0	0	0		ENSG00000198185|ENST00000692313|ZNF334	ENSG00000198185|ENST00000692313|ZNF334	ENSG00000198185|ENST00000692313|ZNF334	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.86065673828125	3	417.243495	1248.70866	0.07517	3.1364E-05	0.61566	0.00025688	0.69083	0.00028824	417.2438178560626	32.326	0.32976	32.326	32.055	32.385	0					13	11	2	0	0	0	0.31852	1	4944	4944		0.69767	0	1	16592			13234	5350	8745	8816	17974	17974					0.09425014618113892
MKNKEHEIE	9	Unmodified	_MKNKEHEIE_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;YEATS2-HTR3C|1|fusion	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3079223632812	2	579.284605	1156.55466	0.3115	0.00018045	-0.50844	-0.00029453	-0.19694	-0.00011408	579.2837880715579	59.996	0.54678	60.068	59.735	60.282	0.072338					33	20	2	0	0	0	0.23975	1	13187	13187		14.838	0.93222	1	140290			13235	3953	8746	8817	17975	17975					-0.017357236137058862
MKNWWMFL	8	Unmodified	_MKNWWMFL_					0	0	0		chr12:77034042-77043065|475|16.38|0.51|5.0|-|0|E2F7,E2F7|1	chr12:77034042-77043065|475|16.38|0.51|5.0|-|0|E2F7,E2F7|1	chr12:77034042-77043065|475|16.38|0.51|5.0|-|0|E2F7,E2F7|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7617797851562	2	578.277541	1154.54053	0.68532	0.00039631	-0.078179	-4.5209E-05	0.60714	0.0003511	578.2771082888904	67.77	0.46503	67.833	67.664	68.129	0.063507					20	16	2	0	0	0	0.3576	1	15659	15659		5.2307	0.90143	1	106230			13236	151	8747	8818	17976	17976					-0.030560475756828964
MKQPKPPL	8	Unmodified	_MKQPKPPL_					0	0	0			REV__ENSG00000196220|ENST00000383836|SRGAP3	REV__ENSG00000196220|ENST00000383836|SRGAP3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7790222167969	2	469.778231	937.541908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.989	1	87.989	87.489	88.489	0								0	0	0	0.38822	1	21896	21896		2.3027	0	1		+		13237	10808	8748	8819	17977	17977					0.07063909784733369
MKSERVGILSG	11	Unmodified	_MKSERVGILSG_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000111664|ENST00000229264|GNB3	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3085327148438	2	588.823898	1175.63324	-0.05945	-3.5006E-05	-0.28174	-0.00016589	-0.34119	-0.0002009	588.8243497023612	45.047	0.26347	45.047	44.942	45.205	0					12	9	2	0	0	0	0.32422	1	8828	8828		15.248	2.206	1	41654			13238	1717	8749	8820	17978	17978					0.05245128691399259
MKSVVSWHY	9	Unmodified	_MKSVVSWHY_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8004760742188	2	568.781502	1135.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.768	1	37.768	37.268	38.268	0								0	0	0	0.26517	1	6620	6620		6.2058	1.8765	1				13239	7529;3480	8750	8821	17979	17979					-0.013901970545475706
MKYGNHCYYF	10	Unmodified	_MKYGNHCYYF_					0	0	0		ENSG00000139187|ENST00000356986|KLRG1;nc|ENSG00000139187|Q96E93|KLRG1	ENSG00000139187|ENST00000356986|KLRG1	ENSG00000139187|ENST00000356986|KLRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.5185852050781	3	442.519576	1324.5369	-0.016195	-7.1664E-06	-2.4307	-0.0010756	-2.4469	-0.0010828	442.518419020336	49.118	0.4475	49.195	48.956	49.404	0.076607					28	16	2	0	0	0	0.47119	1	9940	9940		0.77653	0.078866	1	113770			13240	2955	8751	8822	17980	17980					-0.11238762140214931
MKYPRICI	8	Unmodified	_MKYPRICI_					0	0	0		ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	ENST00000510927.5_1_4:106967729-107168455:-|nuORF	ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2767944335938	2	512.277541	1022.54053	-0.26437	-0.00013543	-0.47451	-0.00024308	-0.73888	-0.00037851	512.2772184740294	21.728	0.25903	21.728	21.601	21.86	0					47	24	3	0	0	0	0.54097	1	1918	1918		0.69038	0	1	26786			13241	3244	8752	8823	17981	17981					0.030159524243003943
MLADLHYLF	9	Unmodified	_MLADLHYLF_					0	0	0		ENST00000533238.5_1_11:122929791-122931422:-|nuORF	ENST00000533238.5_1_11:122929791-122931422:-|nuORF	ENST00000533238.5_1_11:122929791-122931422:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8177490234375	2	561.786253	1121.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.88	1	103.88	103.38	104.38	0								0	0	0	0.23452	1	26711	26711		12.532	0.89125	1				13242	7037	8753	8824	17982	17982					0.002035712309407245
MLAIFVTRR	9	Unmodified	_MLAIFVTRR_					0	0	0			REV__MFSD11|p.T177M|1|0.12|ENSG00000092931|chr17:76744355-76744355|C/T|missense_variant	REV__MFSD11|p.T177M|1|0.12|ENSG00000092931|chr17:76744355-76744355|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8307495117188	2	553.828786	1105.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.673	1	81.673	81.173	82.173	0								0	0	0	0.2699	1	19973	19973		5.2307	0.90143	1		+		13243	12733	8754	8825	17983	17983					0.09442361487435846
MLAVFKWDW	9	Unmodified	_MLAVFKWDW_					0	0	0		ENST00000308488.10_1_11:77374192-77374351:-|nuORF	ENST00000308488.10_1_11:77374192-77374351:-|nuORF	ENST00000308488.10_1_11:77374192-77374351:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3132934570312	2	598.30207	1194.58959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.867	1	41.867	41.367	42.367	0								0	0	0	0.28527	1	7856	7856		2.0598	0.57785	1				13244	5990	8755	8826	17984	17984					7.563984922853706E-05
MLCFGLASLAL	11	Unmodified	_MLCFGLASLAL_					0	0	0			REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8043823242188	2	569.803588	1137.59262	0.10013	5.7057E-05	0.49661	0.00028297	0.59674	0.00034003	569.8038404544415	39.419	0.60866	39.508	39.321	39.93	0.088562					62	24	4	0	0	0	0.41309	1	7084	7084		1.3295	0.72803	1	242280	+		13245	10153	8756	8827	17985	17985					0.02933071047436897
MLCKLRKIF	9	Unmodified	_MLCKLRKIF_					0	0	0		ENST00000480755.1_1_19:9794211-9794394:-|nuORF	ENST00000480755.1_1_19:9794211-9794394:-|nuORF	ENST00000480755.1_1_19:9794211-9794394:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8164672851562	2	576.343215	1150.67188	0.53157	0.00030637	2.6858	0.0015479	3.2173	0.0018543	576.3444364381184	70.208	0.62865	70.208	70.018	70.647	0					33	23	2	0	0	0	0.24749	1	16589	16589		2.3027	0.4585	1	197230			13246	6746	8757	8828	17986	17986					0.10256762792209884
MLDAIIENL	9	Unmodified	_MLDAIIENL_					0	0	0			REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.27587890625	2	516.275718	1030.53688	0.40017	0.0002066	0.016231	8.3795E-06	0.4164	0.00021498	516.275608486831	62.201	1.0969	62.201	61.786	62.883	0					67	41	3	0	0	0	0.12809	2	13965	13965;14064		26.884	6.0124	1	349670	+		13247	7697	8758	8829	17987;17988	17987					0.022835611314576454
MLDAIIENL	9	Unmodified	_MLDAIIENL_					0	0	0			REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.27587890625	2	516.275718	1030.53688	0.3538	0.00018266	-0.077217	-3.9865E-05	0.27658	0.00014279	516.2755577302789	62.025	0.92366	62.099	61.825	62.748	0.073421					64	36	3	0	0	0	0.12809	1	13807	13807		26.884	9.9414	1	334200	+		13248	7697	8758	8829	17989	17989					0.022835611314576454
MLDWADGKLF	10	Unmodified	_MLDWADGKLF_					0	0	0		nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2902221679688	2	598.294442	1194.57433	0.29034	0.00017371	-3.7785	-0.0022606	-3.4882	-0.0020869	598.2932776970647	71.364	1.071	71.423	70.798	71.869	0.058586					76	38	3	0	0	0	0.38104	1	16629	16629		13.906	2.2658	1	499640			13249	3102	8759	8830	17990	17990					-0.01517347602953123
MLDWVPIHF	9	Unmodified	_MLDWVPIHF_					0	0	0		ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000463313.1_1_12:111078308-111085046:+|nuORF;ENST00000460357.1_1_12:111082772-111083018:+|nuORF	ENST00000397656.8_1_12:111066004-111085694:+|nuORF	ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2928466796875	2	579.294245	1156.57394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.168	1	99.211	98.711	99.711	0.042839								0	0	0	0.28527	1	25135	25135		2.0598	0.57785	1				13250	5496	8760	8831	17991	17991					0.0019127746786580246
MLEDWIKPE	9	Unmodified	_MLEDWIKPE_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8037109375	2	580.78645	1159.55835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.04	1	106.04	105.54	106.54	0								0	0	0	0.26267	1	27331	27331		6.7232	0.51738	1				13251	2939	8761	8832	17992	17992					-0.015050538398099889
MLEDWIKPE	9	Unmodified	_MLEDWIKPE_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.803955078125	2	580.78645	1159.55835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.16	1	106.16	105.66	106.66	0								0	0	0	0.22204	1	27368	27368		14.838	6.0929	1				13252	2939	8761	8832	17993	17993					-0.015050538398099889
MLESHMDC	8	Unmodified	_MLESHMDC_					0	0	0		ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7214660644531	2	483.179906	964.345259	-0.87031	-0.00042052	0.84123	0.00040647	-0.029077	-1.4049E-05	483.1801983784683	41.74	0.42601	41.74	41.575	42.001	0					21	15	2	0	0	0	0.3576	1	7859	7859		5.7604	1.0044	1	85079			13253	1733	8762	8833	17994	17994					-0.1383400616284689
MLFFLNCLTN	10	Unmodified	_MLFFLNCLTN_					0	0	0		ENST00000301919.8_1_11:105892151-105892283:-|nuORF	ENST00000301919.8_1_11:105892151-105892283:-|nuORF	ENST00000301919.8_1_11:105892151-105892283:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8677062988281	3	405.868205	1214.58279	-0.54802	-0.00022242	-0.13005	-5.2783E-05	-0.67806	-0.0002752	405.8683056658045	42.005	0.36637	42.095	41.844	42.21	0.089764					24	14	3	0	0	0	0.31853	1	7772	7772		0.62683	0	1	49006			13254	5977	8763	8834	17995	17995					-0.015921169579769412
MLFIFMAR	8	Unmodified	_MLFIFMAR_					0	0	0			REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7755737304688	2	514.774634	1027.53471	0.64241	0.0003307	0.83127	0.00042791	1.4737	0.00075861	514.7750222046441	93.108	0.69448	93.108	92.767	93.462	0					53	26	3	0	0	0	0.48651	1	23474	23474		14.582	2.0501	1	201920	+		13255	12319	8764	8835	17996	17996					0.022048539126444666
MLFIFMAR	8	Unmodified	_MLFIFMAR_					0	0	0			REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7754516601562	2	514.774634	1027.53471	0.56326	0.00028995	1.038	0.00053432	1.6012	0.00082427	514.7752509158532	93.155	0.71864	93.192	92.748	93.467	0.037369					58	29	3	0	0	0	0.48651	1	23293	23293		14.582	14.582	1	236420	+		13256	12319	8764	8835	17997	17997					0.022048539126444666
MLFIFMAR	8	Unmodified	_MLFIFMAR_					0	0	0			REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	514.774634	1027.53471	0.64241	0.0003307	0.83127	0.00042791	1.4737	0.00075861	514.7750222046441	93.108	0.69448	93.108	92.767	93.462	0	-0.042163	-0.00011794	NaN	14.582	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201920	+		13257	12319	8764	8835							0.022048539126444666
MLFIFMAR	8	Unmodified	_MLFIFMAR_					0	0	0			REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	514.774634	1027.53471	0.56326	0.00028995	1.038	0.00053432	1.6012	0.00082427	514.7752509158532	93.155	0.71864	93.192	92.748	93.467	0.037369	0.042163	9.4875E-05	NaN	14.582	58	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236420	+		13258	12319	8764	8835							0.022048539126444666
MLFRTENSLW	10	Unmodified	_MLFRTENSLW_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.8852233886719	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.51	1	103.51	103.01	104.01	0								0	0	0	0.33869	1	26611	26611		1.7423	0.63252	1				13259	264	8765	8836	17998	17998					-0.002748713086020871
MLFYILNAF	9	Unmodified	_MLFYILNAF_					0	0	0			REV__nc|ENSG00000145217|Q9H2B4-2|SLC26A1	REV__nc|ENSG00000145217|Q9H2B4-2|SLC26A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7645874023438	2	566.298996	1130.58344	0.65347	0.00037006	-0.61994	-0.00035107	0.033532	1.8989E-05	566.298183284769	84.569	1.0938	84.569	84.388	85.482	0					117	51	3	0	0	0	0.15192	1	21057	21057		12.532	0	1	583700	+		13260	9515	8766	8837	17999	17999					0.023370457533701483
MLFYILNAF	9	Unmodified	_MLFYILNAF_					0	0	0			REV__nc|ENSG00000145217|Q9H2B4-2|SLC26A1	REV__nc|ENSG00000145217|Q9H2B4-2|SLC26A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7645263671875	2	566.298996	1130.58344	0.49956	0.0002829	-0.53227	-0.00030142	-0.032711	-1.8524E-05	566.2984758891558	84.667	2.0785	84.69	84.547	86.626	0.023125					132	89	3	0	0	0	0.22289	1	20889	20889		12.532	0	1	315120	+		13261	9515	8766	8837	18000	18000					0.023370457533701483
MLGRERSFEK	10	Unmodified	_MLGRERSFEK_					0	0	0			REV__ENST00000567571.5_1_15:75080899-75085480:+|nuORF	REV__ENST00000567571.5_1_15:75080899-75085480:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.88494873046875	3	418.220407	1251.63939	0.049092	2.0531E-05	0.73017	0.00030537	0.77926	0.0003259	418.2207834141513	36.414	0.8268	36.496	36.14	36.967	0.081715					49	34	2	0	0	0	0.3181	1	6107	6107		3.5871	1.9948	1	35258	+		13262	12509	8767	8838	18001	18001					0.023636469229359136
MLHHCIARWI	10	Unmodified	_MLHHCIARWI_					0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.3290405273438	2	640.33117	1278.64779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.37	1	106.4	105.9	106.9	0.029739								0	0	0	0.33979	1	27232	27232		0.45834	0.057624	1				13263	501	8768	8839	18002	18002					0.01960922358557582
MLHSFCSYA	9	Unmodified	_MLHSFCSYA_					0	0	0			REV__ENST00000572841.1_1_17:2279931-2282811:+|nuORF	REV__ENST00000572841.1_1_17:2279931-2282811:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2964477539062	2	529.725338	1057.43612	0.38777	0.00020541	-3.908	-0.0020702	-3.5203	-0.0018648	529.7230581795936	55.691	0.37366	55.756	55.548	55.922	0.065128					19	13	2	0	0	0	0.3182	1	11858	11858		4.3292	0.38484	1	76207	+		13264	9390	8769	8840	18003	18003					-0.090297941230574
MLHVLFVL	8	Unmodified	_MLHVLFVL_					0	0	0			REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.77935791015625	2	486.290974	970.567395	-0.033043	-1.6068E-05	2.5616	0.0012457	2.5286	0.0012296	486.292188339196	52.438	0.51292	52.438	52.162	52.675	0					25	17	2	0	0	0	0.46808	1	11041	11041		17.087	0	1	127960	+		13265	11445	8770	8841	18004	18004					0.08093384307164797
MLHVLFVL	8	Unmodified	_MLHVLFVL_					0	0	0			REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.77947998046875	2	486.290974	970.567395	0.072907	3.5454E-05	2.3865	0.0011605	2.4594	0.001196	486.2920640453201	52.316	0.36536	52.383	52.267	52.632	0.067169					25	14	2	0	0	0	0.46808	1	10906	10906		17.087	0	1	49910	+		13266	11445	8770	8841	18005	18005					0.08093384307164797
MLIEKDPSL	9	Oxidation (M)	_M(Oxidation (M))LIEKDPSL_		M(1)LIEKDPSL		M(44)LIEKDPSL	0	0	1		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2809448242188	2	531.281	1060.54745	-0.12248	-6.5069E-05	0.067276	3.5742E-05	-0.0552	-2.9326E-05	531.2808156514852	44.153	1.1074	44.153	43.801	44.909	0					86	38	3	0	0	0	0.048027	1	8608	8608		43.772	11.467	1	307540			13267	2655	8771	8842	18006	18006		171			0.01959543785869755
MLIEKDPSL	9	Oxidation (M)	_M(Oxidation (M))LIEKDPSL_		M(1)LIEKDPSL		M(44)LIEKDPSL	0	0	1		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2808837890625	2	531.281	1060.54745	-0.12281	-6.5245E-05	-0.16387	-8.7063E-05	-0.28668	-0.00015231	531.2807983672972	45.646	1.7304	45.646	44.689	46.42	0					119	60	3	0	0	0	0.048027	1	8894	8894		43.772	16.889	1	293320			13268	2655	8771	8842	18007	18007		171			0.01959543785869755
MLIEKDPSL	9	Oxidation (M)	_M(Oxidation (M))LIEKDPSL_		M(1)LIEKDPSL		M(40)LIEKDPSL	0	0	1		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.28076171875	2	531.281	1060.54745	0.10169	5.4026E-05	-0.047602	-2.529E-05	0.054089	2.8736E-05	531.2807976372092	44.063	0.99405	44.152	43.767	44.761	0.088921					74	34	3	0	0	0	0.064247	1	8456	8456		40.239	14.84	1	233160			13269	2655	8771	8842	18008	18008		171			0.01959543785869755
MLIFEMMVI	9	Unmodified	_MLIFEMMVI_					0	0	0		tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.359375	2	563.789092	1125.56363	-0.17194	-9.6939E-05	0.15199	8.569E-05	-0.019952	-1.1249E-05	564.2905614235137	43.228	0.54579	43.228	42.999	43.544	0					25	18	2	0	0	0	0.25875	1	8292	8292		1.8442	1.8442	1	43281			13270	13490	8772	8843	18009	18009					0.0058721042678371305
MLIIQRIL	8	Unmodified	_MLIIQRIL_					0	0	0		ENST00000372134.5_1_10:85912629-85912848:+|nuORF	ENST00000372134.5_1_10:85912629-85912848:+|nuORF	ENST00000372134.5_1_10:85912629-85912848:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.80767822265625	2	500.322805	998.631058	0.37629	0.00018826	-1.4391	-0.00072	-1.0628	-0.00053173	500.32102613892687	104.39	0.083046	104.42	104.4	104.49	0.034004					6	5	2	0	0	0	0.3576	1	26697	26697		8.5933	0	1	27535			13271	6215	8773	8844	18010	18010					0.13168744744245942
MLILMTSLAW	10	Unmodified	_MLILMTSLAW_					0	0	0		nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.818603515625	2	589.819238	1177.62392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.218	1	77.253	76.753	77.753	0.034485								0	0	0	0.33681	1	18457	18457		3.9444	0	1				13272	7463	8774	8845	18011	18011					0.0422164408153094
MLITMFCDF	9	Unmodified	_MLITMFCDF_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8132934570312	2	560.747424	1119.4803	0.39145	0.0002195	4.1148	0.0023073	4.5062	0.0025268	560.7492814694446	83.516	0.58365	83.538	83.225	83.809	0.021744					28	20	2	0	0	0	0.2404	1	20401	20401		13.508	2.684	1	44064	+		13273	8487	8775	8846	18012	18012					-0.07466526021107711
MLKWGICL	8	Unmodified	_MLKWGICL_					0	0	0		ENST00000608354.1_1_22:30642479-30642794:+|nuORF	ENST00000608354.1_1_22:30642479-30642794:+|nuORF	ENST00000608354.1_1_22:30642479-30642794:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2611999511719	2	482.261359	962.508165	-0.21342	-0.00010293	-0.81303	-0.00039209	-1.0265	-0.00049502	482.26077828556254	45.39	0.54287	45.477	45.211	45.754	0.087543					48	20	3	0	0	0	0.53345	1	8870	8870		5.7604	0	1	152240			13274	7319	8776	8847	18013	18013					0.02541165021307279
MLLDLQTKS	9	Unmodified	_MLLDLQTKS_					0	0	0		nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-4|HMMR	nc|ENSG00000072571|O75330-4|HMMR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7891235351562	2	524.788992	1047.56343	-0.15888	-8.3381E-05	-0.13195	-6.9244E-05	-0.29083	-0.00015262	524.7889653010456	25.193	0.34424	25.289	25.105	25.449	0.096073					65	29	3	0	0	0	0.33849	1	2754	2754		1.6526	0	1	68591			13275	787	8777	8848	18014	18014					0.041552500227680866
MLLEALYLF	9	Unmodified	_MLLEALYLF_					0	0	0		nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2;ENST00000360222.8_1_19:14854584-14867061:-|nuORF	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2902221679688	2	556.806654	1111.59875	0.14951	8.3245E-05	-0.75999	-0.00042317	-0.61049	-0.00033992	556.8062851770688	72.589	0.70667	72.589	72.468	73.174	0					31	24	2	0	0	0	0.23437	1	17234	17234		14.582	0	1	195020			13276	2365	8778	8849	18015	18015					0.04741912550548477
MLLEKPTEF	9	Unmodified	_MLLEKPTEF_					0	0	0		tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3067016601562	2	554.291368	1106.56818	0.35985	0.00019946	-2.4374	-0.001351	-2.0776	-0.0011516	554.7926190163301	56.925	0.37111	56.925	56.674	57.046	0					35	13	4	0	0	0	0.24365	1	12390	12390		13.508	1.8676	1	188450			13277	13546	8779	8850	18016	18016					0.019161341655490105
MLLETPELHG	10	Unmodified	_MLLETPELHG_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2617797851562	2	570.291899	1138.56925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.057	1	34.133	33.633	34.633	0.076244								0	0	0	0.33892	1	5384	5384		1.4819	0.28856	1		+		13278	10176	8780	8851	18017	18017					0.005503485344206638
MLLFLLLL	8	Unmodified	_MLLFLLLL_					0	0	0		ENST00000379565.7_1_X:20173340-20173514:-|nuORF	ENST00000379565.7_1_X:20173340-20173514:-|nuORF	ENST00000379565.7_1_X:20173340-20173514:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.31982421875	2	488.3192	974.623847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.92	1	103.96	103.46	104.46	0.03791								0	0	0	0.38822	1	26558	26558		0	0	1				13279	6279	8781	8852	18018	18018					0.13552012143838965
MLLGFLVF	8	Unmodified	_MLLGFLVF_					0	0	0		ENST00000377126.3_1_9:73002336-73002447:-|nuORF	ENST00000377126.3_1_9:73002336-73002447:-|nuORF	ENST00000377126.3_1_9:73002336-73002447:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.27239990234375	2	470.27225	938.529947	0.38506	0.00018109	1.0081	0.00047407	1.3932	0.00065516	470.272138719299	92.333	0.41444	92.333	92.164	92.579	0					20	15	3	0	0	0	0.53771	1	23229	23229		2.8892	0	1	87127			13280	6251	8782	8853	18019	18019					0.05822293041535431
MLLGHHLP	8	Unmodified	_MLLGHHLP_					0	0	0		ENST00000509783.5_1_5:87966899-87980575:-|nuORF;ENST00000513805.5_1_5:87966879-87980629:-|nuORF	ENST00000509783.5_1_5:87966899-87980575:-|nuORF	ENST00000509783.5_1_5:87966899-87980575:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2417297363281	2	459.254923	916.495293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.149	1	31.149	30.649	31.649	0								0	0	0	0.38822	1	4638	4638		2.8892	0	1				13281	6905	8783	8854	18020	18020					0.033704699534496285
MLLHADGDF	9	Unmodified	_MLLHADGDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7358703613281	2	509.73676	1017.45897	0.31584	0.00016099	-1.4102	-0.00071884	-1.0944	-0.00055784	509.73598636153116	94.761	0.70783	94.761	94.545	95.253	0					49	29	3	0	0	0	0.21398	1	23972	23972		16.942	4.4107	1	244540	+		13282	11135	8784	8855	18021	18021					-0.04906451733938866
MLLHADGDF	9	Unmodified	_MLLHADGDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7358703613281	2	509.73676	1017.45897	0.25525	0.00013011	-1.3397	-0.00068291	-1.0845	-0.0005528	509.73596289006554	94.739	0.57008	94.777	94.544	95.114	0.038086					39	21	2	0	0	0	0.17247	2	23762	23762;23807		21.747	6.9084	1	228170	+		13283	11135	8784	8855	18022;18023	18022					-0.04906451733938866
MLLIILLYD	9	Unmodified	_MLLIILLYD_					0	0	0			REV__ENSG00000152766|ENST00000371930|ANKRD22	REV__ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8300170898438	2	553.830129	1105.6457	0.51383	0.00028457	-0.51172	-0.0002834	0.0021087	1.1679E-06	553.8297367290927	82.746	1.4807	82.767	82.161	83.641	0.021751					147	52	4	0	0	0	0.31136	1	20136	20136		5.2307	5.2307	1	814830	+		13284	9681	8785	8856	18024	18024					0.09710772101743714
MLLIILLYD	9	Unmodified	_MLLIILLYD_					0	0	0			REV__ENSG00000152766|ENST00000371930|ANKRD22	REV__ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	553.830129	1105.6457	0.6217	0.00034432	-0.53263	-0.00029499	0.089065	4.9327E-05	554.3313552276458	82.695	2.1461	82.695	81.434	83.58	0	-0.036082	-6.4862E-06	NaN	5.2307	162	74	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044600	+		13285	9681	8785	8856							0.09710772101743714
MLLIILLYD	9	Unmodified	_MLLIILLYD_					0	0	0			REV__ENSG00000152766|ENST00000371930|ANKRD22	REV__ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	553.830129	1105.6457	0.51383	0.00028457	-0.51172	-0.0002834	0.0021087	1.1679E-06	553.8297367290927	82.746	1.4807	82.767	82.161	83.641	0.021751	0.036082	1.6683E-05	NaN	5.2307	147	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	814830	+		13286	9681	8785	8856							0.09710772101743714
MLLIQLPF	8	Unmodified	_MLLIQLPF_					0	0	0		ENSG00000221931|ENST00000327930|OR6X1	ENSG00000221931|ENST00000327930|OR6X1	ENSG00000221931|ENST00000327930|OR6X1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.790771484375	2	487.790807	973.56706	0.18303	8.9282E-05	-0.073641	-3.5921E-05	0.10939	5.3361E-05	487.7906188742125	76.791	0.81459	76.791	76.298	77.112	0					48	28	2	0	0	0	0.53257	1	18428	18428		6.3541	0	1	201430			13287	5594	8786	8857	18025	18025					0.0792196458729677
MLLPLLWA	8	Unmodified	_MLLPLLWA_					0	0	0		nc|ENSG00000254521|Q96PQ1-2|SIGLEC12	nc|ENSG00000254521|Q96PQ1-2|SIGLEC12	nc|ENSG00000254521|Q96PQ1-2|SIGLEC12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.78558349609375	2	478.785524	955.556496	0.21195	0.00010148	-0.88638	-0.00042439	-0.67443	-0.00032291	478.7851861933336	92.275	0.33489	92.311	92.19	92.524	0.03653					15	11	2	0	0	0	0.53771	1	23057	23057		2.8892	0	1	46458			13288	7617	8787	8858	18026	18026					0.07693981932857241
MLLRKTGR	8	Unmodified	_MLLRKTGR_					0	0	0		ENST00000508237.5_1_17:47394735-47394825:-|nuORF	ENST00000508237.5_1_17:47394735-47394825:-|nuORF	ENST00000508237.5_1_17:47394735-47394825:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.8011169433594	2	487.800029	973.585505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87	1	87	86.5	87.5	0								0	0	0	0.38822	1	21595	21595		2.8892	0	1				13289	6897	8788	8859	18027	18027					0.09765519281882007
MLLRVKFLMP	10	Unmodified	_MLLRVKFLMP_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3775024414062	2	624.371972	1246.72939	-0.14392	-8.986E-05	1.2869	0.00080351	1.143	0.00071365	624.3728870899764	104.59	0.24601	104.59	104.45	104.69	0					28	21	2	0	0	0	0.47318	1	26910	26910		0.40072	0	1	68083	+		13290	8250	8789	8860	18028	18028					0.115896049977664
MLLSPSLSTT	10	Unmodified	_MLLSPSLSTT_					0	0	0			REV__ENST00000504875.5_1_5:149450102-149452918:-|nuORF	REV__ENST00000504875.5_1_5:149450102-149452918:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7525634765625	2	525.281	1048.54745	0.37417	0.00019654	-2.5253	-0.0013265	-2.1511	-0.0011299	525.2790712901692	47.246	0.15058	47.246	47.17	47.321	0					6	4	2	0	0	0	0.31731	1	9463	9463		6.2058	1.4498	1	11428	+		13291	12217	8790	8861	18029	18029					0.025115437858630685
MLLTSDQTL	9	Unmodified	_MLLTSDQTL_					0	0	0		nc|ENSG00000106410|O60393-2|NOBOX;ENSG00000106410|ENST00000467773|NOBOX	nc|ENSG00000106410|O60393-2|NOBOX	nc|ENSG00000106410|O60393-2|NOBOX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2638244628906	2	511.26535	1020.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.764	1	63.764	63.264	64.264	0								0	0	0	0.116	1	14507	14507		30.637	1.555	1				13292	1522	8791	8862	18030	18030					0.006709707517870811
MLMKKCDQL	9	Unmodified	_MLMKKCDQL_					0	0	0			REV__nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L	REV__nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2973022460938	2	555.279423	1108.54429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.402	1	67.402	66.902	67.902	0								0	0	0	0.20792	1	15619	15619		16.942	0	1		+		13293	12820	8792	8863	18031	18031					-0.00563745864133125
MLPDPQNIS	9	Unmodified	_MLPDPQNIS_					0	0	0		ENSG00000198860|ENST00000645668|TSEN15;ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF	ENSG00000198860|ENST00000645668|TSEN15	ENSG00000198860|ENST00000645668|TSEN15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7315979003906	2	507.749867	1013.48518	-0.050268	-2.5523E-05	-0.31781	-0.00016137	-0.36808	-0.00018689	507.7496630947923	43.583	0.90979	43.672	43.425	44.335	0.088924					47	32	2	0	0	0	0.28587	1	8332	8332		8.5933	2.2392	1	63016			13294	5421	8793	8864	18032	18032					-0.02102182562452981
MLPPLETPLF	10	Unmodified	_MLPPLETPLF_					0	0	0		ENSG00000187210|ENST00000376730|GCNT1	ENSG00000187210|ENST00000376730|GCNT1	ENSG00000187210|ENST00000376730|GCNT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2957153320312	2	579.317386	1156.62022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.612	1	97.612	97.112	98.112	0								0	0	0	0.33711	1	24819	24819		3.5965	0	1				13295	5113	8794	8865	18033	18033					0.048172975792795114
MLQQSTCGLD	10	Unmodified	_MLQQSTCGLD_					0	0	0		ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8215942382812	2	548.244092	1094.47363	0.32774	0.00017968	1.6049	0.00087987	1.9326	0.0010595	548.2448780898908	71.748	0.56477	71.748	71.269	71.834	0					20	19	2	0	0	0	0.29345	1	16944	16944		18.146	0	1	54862			13296	1310	8795	8866	18034	18034					-0.06982747648089571
MLQRQTTLE	9	Unmodified	_MLQRQTTLE_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2880859375	2	560.294973	1118.57539	0.31455	0.00017624	0.51683	0.00028957	0.83138	0.00046582	560.2951034944327	59.297	1.6324	59.369	58.971	60.603	0.072338					123	62	4	0	0	0	0.21398	1	12940	12940		16.942	3.8998	1	2140400	+		13297	8983	8796	8867	18035	18035					0.020848667659493003
MLQRSMKKV	9	Unmodified	_MLQRSMKKV_					0	0	0			REV__ENST00000396953.6_2_3:12877564-12877624:-|nuORF	REV__ENST00000396953.6_2_3:12877564-12877624:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2950439453125	2	560.820104	1119.62565	0.49894	0.00027982	1.9134	0.0010731	2.4124	0.0013529	560.8215576184987	60.016	0.1955	60.016	59.956	60.152	0					8	6	2	0	0	0	0.25051	1	13386	13386		7.9102	0	1	33641	+		13298	11727	8797	8868	18036	18036					0.07062697890137315
MLRFLESHL	9	Unmodified	_MLRFLESHL_					0	0	0		ENSG00000132604|ENST00000254942|TERF2;nc|ENSG00000132604|Q15554-4|TERF2	ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2723999023438	2	573.310426	1144.6063	0.077353	4.4347E-05	-4.3941	-0.0025192	-4.3167	-0.0024748	573.8078511392688	48.878	0.2959	48.954	48.78	49.076	0.076603					17	10	2	0	0	0	0.2491	1	9833	9833		8.5933	1.8701	1	38985			13299	2582	8798	8869	18037	18037					0.03978064870852904
MLRFMALF	8	Unmodified	_MLRFMALF_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7742919921875	2	514.774634	1027.53471	0.3307	0.00017024	-1.0607	-0.000546	-0.72997	-0.00037577	514.7740695948086	78.256	0.59155	78.256	77.743	78.335	0					30	19	2	0	0	0	0.49441	1	18916	18916		13.508	0	1	87936	+		13300	10151	8799	8870	18038	18038					0.022048539126217293
MLRFMALF	8	Unmodified	_MLRFMALF_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7749633789062	2	514.774634	1027.53471	0.63793	0.00032839	0.58631	0.00030182	1.2242	0.00063021	514.7749881326694	98.111	0.90288	98.111	97.474	98.377	0					60	44	2	0	0	0	0.45077	1	24880	24880		19.439	6.9074	1	104310	+		13301	10151	8799	8870	18039	18039					0.022048539126217293
MLRFMALF	8	Unmodified	_MLRFMALF_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7493896484375	2	514.774634	1027.53471	0.63793	0.00032839	0.58631	0.00030182	1.2242	0.00063021	514.7749881326694	98.111	0.90288	98.111	97.474	98.377	0					60	44	2	0	0	0	0.35759	1	24890	24890		13.508	13.508	1	104310	+		13302	10151	8799	8870	18040	18040					0.022048539126217293
MLRFMALF	8	Unmodified	_MLRFMALF_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7761840820312	2	514.774634	1027.53471	0.5948	0.00030619	0.36776	0.00018931	0.96256	0.0004955	514.7748314470933	97.984	0.79861	98.024	97.632	98.43	0.040855					64	41	2	0	0	0	0.39998	2	24810	24783;24810		26.341	9.399	1	164540	+		13303	10151	8799	8870	18041;18042	18042					0.022048539126217293
MLRKFIIFL	9	Unmodified	_MLRKFIIFL_					0	0	0		nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENSG00000151148|ENST00000342494|UBE3B	nc|ENSG00000151148|Q7Z3V4-2|UBE3B	nc|ENSG00000151148|Q7Z3V4-2|UBE3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8200073242188	2	590.86738	1179.72021	0.66003	0.00038999	-0.99315	-0.00058682	-0.33312	-0.00019683	590.8665500665563	98.344	0.57869	98.385	98.145	98.724	0.041939					72	30	3	0	0	0	0.34646	1	24989	24989		0.6015	0	1	417380			13304	3448	8800	8871	18043	18043					0.13753579703779906
MLRNDQDTL	9	Unmodified	_MLRNDQDTL_					0	0	0		nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3040161132812	2	553.268955	1104.52336	-0.27486	-0.00015207	-1.2226	-0.00067645	-1.4975	-0.00082852	553.2687550371875	41	0.16507	41	40.938	41.103	0					8	5	2	0	0	0	0.25174	1	7599	7599		7.2892	0	1	22461			13305	535	8801	8872	18044	18044					-0.02472296647783878
MLRQLRSP	8	Unmodified	_MLRQLRSP_					0	0	0		ENSG00000158863|ENST00000289921|FHIP2B	ENSG00000158863|ENST00000289921|FHIP2B	ENSG00000158863|ENST00000289921|FHIP2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2901916503906	2	500.789661	999.564769	0.73544	0.0003683	0.48878	0.00024478	1.2242	0.00061308	501.2908567023793	84.873	0.34608	84.873	84.786	85.132	0					21	12	2	0	0	0	0.3576	1	20966	20966		2.3027	0	1	105230			13306	3706	8802	8873	18045	18045					0.06496928902208765
MLRRDMIVE	9	Unmodified	_MLRRDMIVE_					0	0	0			REV__ENSG00000112893|ENST00000261483|MAN2A1	REV__ENSG00000112893|ENST00000261483|MAN2A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3067016601562	2	581.807193	1161.59983	0.51767	0.00030118	-1.3662	-0.00079487	-0.84854	-0.00049368	581.8067476643545	106.14	0.19164	106.17	106.03	106.23	0.029732					30	22	2	0	0	0	0.25644	1	27136	27136		3.9444	0.3479	1	95020	+		13307	8728	8803	8874	18046	18046					0.025498036478438735
MLSFMRVN	8	Unmodified	_MLSFMRVN_					0	0	0			REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B	REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2505798339844	2	499.251523	996.488493	0.22562	0.00011264	-0.95428	-0.00047643	-0.72866	-0.00036378	499.2508963665944	52.287	0.38356	52.287	52.075	52.458	0					21	12	3	0	0	0	0.50159	1	11036	11036		12.532	2.4576	1	67464	+		13308	11508	8804	8875	18047	18047					-0.009892109894394707
MLSHTDYII	9	Unmodified	_MLSHTDYII_					0	0	0			REV__ENST00000539652.1_1_12:66522892-66539669:-|nuORF	REV__ENST00000539652.1_1_12:66522892-66539669:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7643432617188	2	546.773342	1091.53213	0.19518	0.00010672	4.4719	0.0024451	4.6671	0.0025518	546.7776513082273	71.861	0.61204	71.917	71.54	72.152	0.055931					22	21	2	0	0	0	0.17247	1	16771	16771		21.747	3.6003	1	103780	+		13309	9742	8805	8876	18048	18048					-0.009973230113246245
MLSHTDYII	9	Unmodified	_MLSHTDYII_					0	0	0			REV__ENST00000539652.1_1_12:66522892-66539669:-|nuORF	REV__ENST00000539652.1_1_12:66522892-66539669:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	546.773342	1091.53213	0.10064	5.5026E-05	4.1234	0.0022546	4.2241	0.0023096	546.7775868597395	72.019	0.16489	72.019	71.972	72.137	0	0.050735	-0.0002686	NaN	21.747	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98428	+		13310	9742	8805	8876							-0.009973230113246245
MLSHTDYII	9	Unmodified	_MLSHTDYII_					0	0	0			REV__ENST00000539652.1_1_12:66522892-66539669:-|nuORF	REV__ENST00000539652.1_1_12:66522892-66539669:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	546.773342	1091.53213	0.19518	0.00010672	4.4719	0.0024451	4.6671	0.0025518	546.7776513082273	71.861	0.61204	71.917	71.54	72.152	0.055931	-0.050735	0.00011246	NaN	21.747	22	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103780	+		13311	9742	8805	8876							-0.009973230113246245
MLSLFYSVF	9	Unmodified	_MLSLFYSVF_					0	0	0		OR2A2|p.H277Y|1|0.09|ENSG00000221989|chr7:144110411-144110411|C/T|missense_variant	OR2A2|p.H277Y|1|0.09|ENSG00000221989|chr7:144110411-144110411|C/T|missense_variant	OR2A2|p.H277Y|1|0.09|ENSG00000221989|chr7:144110411-144110411|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8298950195312	2	553.783179	1105.5518	0.78604	0.00043529	-2.8774	-0.0015935	-2.0914	-0.0011582	553.781773073788	82.119	0.69959	82.119	81.81	82.509	0					33	24	2	0	0	0	0.2298	1	20143	20143		16.942	2.3606	1	72454			13312	7654	8806	8877	18049	18049					0.0032505299943750288
MLSPDHATF	9	Unmodified	_MLSPDHATF_					0	0	0			REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B	REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7365417480469	2	509.73676	1017.45897	0.31584	0.00016099	-1.4102	-0.00071884	-1.0944	-0.00055784	509.73598636153116	94.761	0.70783	94.761	94.545	95.253	0					49	29	3	0	0	0	0.25209	1	23922	23922		12.532	0	1	244540	+		13313	11002	8807	8878	18050	18050					-0.049064517339502345
MLSPEPNGGIA	11	Unmodified	_MLSPEPNGGIA_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.267333984375	2	543.268424	1084.5223	0.33113	0.00017989	2.8076	0.0015253	3.1388	0.0017052	543.2679169525818	56.135	0.62256	56.135	55.948	56.57	0					64	22	4	0	0	0	0.36299	1	12182	12182		10.8	0.72558	1	718700	+		13314	9864	8808	8879	18051	18051					-0.016585110166943196
MLSPQEDPK	9	Unmodified	_MLSPQEDPK_					0	0	0			REV__nc|ENSG00000083444|Q02809-2|PLOD1	REV__nc|ENSG00000083444|Q02809-2|PLOD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7721557617188	2	522.755149	1043.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.413	1	57.413	56.913	57.913	0								0	0	0	0.17567	1	12574	12574		21.747	3.6117	1		+		13315	8256	8809	8880	18052	18052					-0.024261999080408714
MLSVKPPEP	9	Unmodified	_MLSVKPPEP_					0	0	0			REV__ENST00000480730.5_1_6:33272047-33272452:-|nuORF	REV__ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.27459716796875	2	499.272978	996.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.13	1	60.13	59.63	60.63	0								0	0	0	0.27782	1	13396	13396		3.5965	0.70727	1		+		13316	12083	8810	8881	18053	18053					0.03299882339638316
MLTNMRMIQ	9	Unmodified	_MLTNMRMIQ_					0	0	0		ENST00000382093.5_1_2:3517710-3517743:-|nuORF	ENST00000382093.5_1_2:3517710-3517743:-|nuORF	ENST00000382093.5_1_2:3517710-3517743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2726440429688	2	569.282497	1136.55044	-0.16174	-9.2073E-05	-0.39254	-0.00022347	-0.55428	-0.00031554	569.2821535524378	31.299	0.54483	31.299	31.078	31.622	0					42	26	2	0	0	0	0.30005	1	4762	4762		6.7232	0.51738	1	74404			13317	6299	8811	8882	18054	18054					-0.012372276326004794
MLTSSQSF	8	Unmodified	_MLTSSQSF_					0	0	0			REV__ENST00000523439.1_1_19:58003464-58005455:+|nuORF	REV__ENST00000523439.1_1_19:58003464-58005455:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.7106018066406	2	450.710211	899.405868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.113	1	85.113	84.613	85.613	0								0	0	0	0.38822	1	21018	21018		4.756	0.42677	1		+		13318	8528	8812	8883	18055	18055					-0.04785829516583817
MLVDREEK	8	Unmodified	_MLVDREEK_					0	0	0		JAG1|p.T1177M|1|0.65|ENSG00000101384|chr20:10639625-10639625|G/A|missense_variant	JAG1|p.T1177M|1|0.65|ENSG00000101384|chr20:10639625-10639625|G/A|missense_variant	JAG1|p.T1177M|1|0.65|ENSG00000101384|chr20:10639625-10639625|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.811767578125	2	510.263142	1018.51173	0.53577	0.00027338	-1.7013	-0.00086813	-1.1656	-0.00059474	510.76356816751365	83.594	0.083771	83.594	83.55	83.634	0					4	2	2	0	0	0	0.3576	1	20547	20547		3.5965	0	1	33935			13319	7364	8813	8884	18056	18056					0.0032150632887351094
MLVFLMAALF	10	Unmodified	_MLVFLMAALF_					0	0	0			REV__nc|ENSG00000107736|Q9H251-9|CDH23	REV__nc|ENSG00000107736|Q9H251-9|CDH23	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.273193359375	2	578.318874	1154.6232	0.35749	0.00020674	2.9613	0.0017126	3.3188	0.0019193	578.3204108577695	83.607	0.42459	83.628	83.414	83.838	0.021744					20	14	2	0	0	0	0.31667	1	20388	20388		7.9102	0	1	78675	+		13320	8598	8814	8885	18057	18057					0.0520684943244305
MLVGKEDYNK	10	Unmodified	_MLVGKEDYNK_					0	0	0			REV__tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1	REV__tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2904052734375	2	598.802631	1195.59071	0.54852	0.00032845	-1.0953	-0.00065587	-0.54679	-0.00032742	598.8007089750279	70.6	0.77835	70.66	70.332	71.11	0.060562					73	29	4	0	0	0	0.41688	1	16540	16540		10.074	0	1	273520	+		13321	13250	8815	8886	18058	18058					0.0007373356313564727
MLWQPVRG	8	Unmodified	_MLWQPVRG_					0	0	0		ENST00000498378.5_1_2:220308147-220308201:+|nuORF	ENST00000498378.5_1_2:220308147-220308201:+|nuORF	ENST00000498378.5_1_2:220308147-220308201:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.24908447265625	2	493.765655	985.516756	0.38246	0.00018884	1.0667	0.0005267	1.4492	0.00071555	493.7661520439917	37.541	0.15266	37.541	37.494	37.646	0					6	4	2	0	0	0	0.3576	1	6555	6555		2.3027	0	1	16581			13322	6854	8816	8887	18059	18059					0.0234185498215993
MLYEEDLQN	9	Unmodified	_MLYEEDLQN_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7537841796875	2	577.755346	1153.49614	0.48768	0.00028176	-1.8856	-0.0010894	-1.3979	-0.00080766	577.7539487660503	71.287	0.33101	71.345	71.133	71.464	0.058578					19	11	2	0	0	0	0.24021	1	16646	16646		13.906	2.2658	1	101420			13323	4576	8817	8888	18060	18060					-0.07446824978819677
MLYEYKRDE	9	Unmodified	_MLYEYKRDE_					0	0	0			REV__ENSG00000112773|ENST00000320172|TENT5A	REV__ENSG00000112773|ENST00000320172|TENT5A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8087768554688	2	623.792263	1245.56997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.468	1	70.468	69.968	70.968	0								0	0	0	0.18462	1	16549	16549		15.847	0	1		+		13324	8725	8818	8889	18061	18061					-0.04298856816490115
MLYISIDTF	9	Unmodified	_MLYISIDTF_					0	0	0			REV__ENST00000296257.9_1_3:185347643-185347886:+|nuORF	REV__ENST00000296257.9_1_3:185347643-185347886:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7823486328125	2	551.778093	1101.54163	0.88522	0.00048844	-2.2982	-0.0012681	-1.413	-0.00077965	551.7761762618394	81.605	0.87765	81.605	81.265	82.142	0					106	30	6	0	0	0	0.28587	1	19916	19916		8.5933	0.68312	1	1003200	+		13325	11325	8819	8890	18062	18062					-0.005075547258002189
MLYMWLIL	8	Unmodified	_MLYMWLIL_					0	0	0			REV__ENSG00000186943|ENST00000335040|OR13C8	REV__ENSG00000186943|ENST00000335040|OR13C8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2959594726562	2	541.792492	1081.57043	0.33685	0.00018251	0.54352	0.00029448	0.88038	0.00047698	541.7926695304997	95.993	0.35899	95.993	95.801	96.16	0					29	19	2	0	0	0	0.35759	1	24306	24306		11.114	0	1	123330	+		13326	10718	8820	8891	18063	18063					0.03290891369670135
MLYSTDYQGST	11	Unmodified	_MLYSTDYQGST_					0	0	0			REV__ENST00000335154.9_1_12:50032767-50032947:-|nuORF	REV__ENST00000335154.9_1_12:50032767-50032947:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3695068359375	2	633.271361	1264.52817	0.20586	0.00013037	0.20397	0.00012917	0.40983	0.00025954	633.271418011742	90.898	0.49951	90.898	90.683	91.183	0					40	17	3	0	0	0	0.3104	1	22770	22770		4.1895	0	1	456080	+		13327	11434	8821	8892	18064	18064					-0.09351457295679211
MLYYLFKE	8	Unmodified	_MLYYLFKE_					0	0	0		ENST00000400011.6_1_15:30112733-30113639:-|nuORF	ENST00000400011.6_1_15:30112733-30113639:-|nuORF	ENST00000400011.6_1_15:30112733-30113639:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.29150390625	2	553.783179	1105.5518	0.63235	0.00035018	-2.4293	-0.0013453	-1.797	-0.00099514	553.7819655955258	79.884	0.40054	79.91	79.648	80.049	0.026428					20	13	2	0	0	0	0.35759	1	19304	19304		5.2307	0	1	79037			13328	6363	8822	8893	18065	18065					0.0032505299943750288
MMAMRIAYF	9	Unmodified	_MMAMRIAYF_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2689208984375	2	567.268858	1132.52316	0.48588	0.00027563	-0.11033	-6.2588E-05	0.37555	0.00021304	567.268669465008	98.883	0.29356	98.925	98.818	99.112	0.041931					24	18	2	0	0	0	0.29576	1	25036	25036		7.2892	0.56607	1	202030			13329	13666	8823	8894	18066	18066					-0.037797111730014876
MMEVDPLVLT	10	Unmodified	_MMEVDPLVLT_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2916259765625	2	574.290511	1146.56647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.565	1	40.565	40.065	41.065	0								0	0	0	0.33738	1	7462	7462		3.2813	0	1				13330	4904	8824	8895	18067	18067					-0.0009524291474463098
MMEVDPLVLT	10	Unmodified	_MMEVDPLVLT_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2902221679688	2	574.290511	1146.56647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.41	1	41.41	40.91	41.91	0								0	0	0	0.33215	1	7717	7717		9.3831	0	1				13331	4904	8824	8895	18068	18068					-0.0009524291474463098
MMEVDPLVLT	10	Unmodified	_MMEVDPLVLT_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.291015625	2	574.290511	1146.56647	0.16034	9.2081E-05	0.37754	0.00021682	0.53788	0.0003089	574.2910473762183	35.506	4.4992	35.585	35.279	39.778	0.078827					435	173	5	0	0	0	0.44246	1	6771	6771		6.2058	0	1	7724500			13332	4904	8824	8895	18069	18069					-0.0009524291474463098
MMFQSWYEL	9	Unmodified	_MMFQSWYEL_					0	0	0			REV__ENSG00000161800|ENST00000312377|RACGAP1	REV__ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7322387695312	2	617.767203	1233.51985	-0.6795	-0.00041977	-0.76039	-0.00046974	-1.4399	-0.00088952	617.7670637132408	45.186	1.9183	45.186	44.502	46.42	0					163	67	4	0	0	0	0.33849	1	9197	9197		1.6526	0.45928	1	234050	+		13333	9869	8825	8896	18070	18070					-0.08756682746002298
MMIANSRN	8	Unmodified	_MMIANSRN_					0	0	0		ENSG00000124171|ENST00000371610|PARD6B	ENSG00000124171|ENST00000371610|PARD6B	ENSG00000124171|ENST00000371610|PARD6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7229309082031	2	468.723129	935.431706	0.59021	0.00027665	-0.28965	-0.00013577	0.30056	0.00014088	468.7230404394937	84.163	0.46843	84.163	83.841	84.309	0					50	19	4	0	0	0	0.53858	1	20685	20685		2.3027	0.4585	1	1350400			13334	2240	8826	8897	18071	18071					-0.03859258545958255
MMKMIIFL	8	Unmodified	_MMKMIIFL_					0	0	0		ENST00000429751.6_1_16:15178517-15179525:-|nuORF	ENST00000429751.6_1_16:15178517-15179525:-|nuORF	ENST00000429751.6_1_16:15178517-15179525:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7813110351562	2	513.78107	1025.54759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.17	1	119.18	118.68	119.68	0.013062								0	0	0	0.38822	1	29965	29965		0.79363	0	1				13335	6481	8827	8898	18072	18072					0.03583548980532214
MMKQQDQF	8	Unmodified	_MMKQQDQF_					0	0	0		CON__Q9N2I2	CON__Q9N2I2	CON__Q9N2I2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7848510742188	2	528.23607	1054.45759	0.5654	0.00029867	-2.8362	-0.0014982	-2.2708	-0.0011995	528.2346047243374	92.569	0.33569	92.569	92.405	92.741	0					20	12	2	0	0	0	0.3576	1	23282	23282		7.9102	0.62092	1	82816		+	13336	239	8828	8899	18073	18073					-0.06746409094353112
MMLEHFKNQ	9	Unmodified	_MMLEHFKNQ_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;ENST00000463038.1_1_3:132241830-132242644:+|nuORF	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.79736328125	2	589.278269	1176.54198	0.056776	3.3457E-05	2.3402	0.001379	2.397	0.0014125	589.2796501780365	33.107	0.77159	33.107	32.856	33.628	0					45	29	2	0	0	0	0.33849	1	5231	5231		1.6526	0.17072	1	32378			13337	291	8829	8900	18074	18074					-0.039224582775659655
MMLHKPIT	8	Unmodified	_MMLHKPIT_					0	0	0		ENST00000503468.5_1_15:56126312-56207567:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4	ENST00000503468.5_1_15:56126312-56207567:-|nuORF	ENST00000503468.5_1_15:56126312-56207567:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.763427734375	2	485.764266	969.513979	-0.38483	-0.00018694	-0.16735	-8.1293E-05	-0.55218	-0.00026823	485.76411805255714	27.511	1.0242	27.511	27.27	28.295	0					193	68	4	0	0	0	0.50159	1	3515	3515		12.532	7.3009	1	2708000			13338	750	8830	8901	18075	18075					0.028002635329698933
MMLHKPIT	8	Unmodified	_MMLHKPIT_					0	0	0		ENST00000503468.5_1_15:56126312-56207567:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4	ENST00000503468.5_1_15:56126312-56207567:-|nuORF	ENST00000503468.5_1_15:56126312-56207567:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7625732421875	2	485.764266	969.513979	-0.34402	-0.00016711	-0.2124	-0.00010318	-0.55642	-0.00027029	485.7640971510653	27.399	0.92989	27.486	27.257	28.187	0.0867					193	66	4	0	0	0	0.46036	1	3358	3358		18.135	18.135	1	2524300			13339	750	8830	8901	18076	18076					0.028002635329698933
MMLLIRMMSM	10	Unmodified	_MMLLIRMMSM_					0	0	0		ENST00000378470.5_2_10:14561962-14562064:-|nuORF	ENST00000378470.5_2_10:14561962-14562064:-|nuORF	ENST00000378470.5_2_10:14561962-14562064:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.88494873046875	3	419.540049	1255.59832	0.047762	2.0038E-05	0.69612	0.00029205	0.74388	0.00031209	419.5404992022941	36.375	0.35069	36.456	36.34	36.691	0.081711					15	14	2	0	0	0	0.31833	1	6107	6107		2.086	0	1	17537			13340	6267	8831	8902	18077	18077					-0.019256130284247774
MMMNMLMGNAS	11	Unmodified	_MMMNMLMGNAS_					0	0	0			REV__ENSG00000132017|ENST00000254337|DCAF15	REV__ENSG00000132017|ENST00000254337|DCAF15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7426147460938	2	615.744033	1229.47351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.289	1	20.289	19.789	20.789	0								0	0	0	0.34212	1	1570	1570		0	0	1		+		13341	9102	8832	8903	18078	18078					-0.1320453023556638
MMMSNTLPEV	10	Unmodified	_MMMSNTLPEV_					0	0	0			REV__ENST00000414617.1_1_21:34853889-34854420:-|nuORF	REV__ENST00000414617.1_1_21:34853889-34854420:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2371826171875	2	576.75852	1151.50249	0.12717	7.3345E-05	3.6109	0.0020826	3.7381	0.002156	576.7605089318265	34.746	0.25241	34.822	34.733	34.985	0.076248					13	9	2	0	0	0	0.31834	1	5607	5607		1.6526	0.17072	1	18784	+		13342	11793	8833	8904	18079	18079					-0.0672034634328611
MMMVLPLLI	9	Unmodified	_MMMVLPLLI_					0	0	0		ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.985107421875	2	530.802003	1059.58945	0.40496	0.00021495	-0.80226	-0.00042584	-0.3973	-0.00021089	530.8014590707131	100.83	0.14888	100.83	100.76	100.91	0					10	8	2	0	0	0	0.237	1	25812	25812		9.3474	0	1	30443			13343	2648	8834	8905	18080	18080					0.06204104669063781
MMREMMCQ	8	Unmodified	_MMREMMCQ_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2866821289062	2	530.199261	1058.38397	-0.028852	-1.5297E-05	3.617	0.0019177	3.5881	0.0019024	530.201269671649	40.294	0.17355	40.383	40.285	40.458	0.089645					7	5	2	0	0	0	0.3576	1	7232	7232		2.5775	1.7838	1	12220	+		13344	9217	8835	8906	18081	18081					-0.14288740124311516
MMRKGLPE	8	Unmodified	_MMRKGLPE_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2506408691406	2	481.251523	960.488493	-0.44354	-0.00021345	-0.85131	-0.00040969	-1.2948	-0.00062315	481.2510917082623	26.26	0.38261	26.26	26.102	26.485	0					59	32	3	0	0	0	0.53423	1	3232	3232		5.2307	0.47466	1	38297			13345	4334	8836	8907	18082	18082					0.006667890105745755
MMRKGLPE	8	Unmodified	_MMRKGLPE_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2507629394531	2	481.251523	960.488493	-0.34337	-0.00016525	-0.77807	-0.00037445	-1.1214	-0.00053969	481.2510975038796	26.106	0.38311	26.198	26.052	26.435	0.091507					54	34	2	0	0	0	0.53423	2	3027	3027;3065		5.2307	0.47466	1	42436			13346	4334	8836	8907	18083;18084	18083					0.006667890105745755
MMRTAKGDLHY	11	Unmodified	_MMRTAKGDLHY_					0	0	0		nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	nc|ENSG00000215041|Q96JN8-2|NEURL4	nc|ENSG00000215041|Q96JN8-2|NEURL4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.5606384277344	3	441.549647	1321.62711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.5	1	48.5	48	49	0								0	0	0	0.32645	1	9858	9858		5.5233	2.451	1				13347	5575	8837	8908	18085	18085					-0.020837128117818793
MMTIRRWY	8	Unmodified	_MMTIRRWY_					0	0	0			REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF	REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.29248046875	2	578.791346	1155.56814	0.18994	0.00010994	-0.33786	-0.00019555	-0.14791	-8.5612E-05	578.7909931861442	38.636	4.7442	38.636	37.194	41.938	0					318	171	4	0	0	0	0.54097	1	7445	7445		0.69038	0.088878	1	440870	+		13348	8815	8838	8909	18086	18086					-0.0034214431543659884
MMTPKRVYGW	10	Unmodified	_MMTPKRVYGW_					0	0	0		ENST00000378192.2_1_9:35724919-35725570:-|nuORF	ENST00000378192.2_1_9:35724919-35725570:-|nuORF	ENST00000378192.2_1_9:35724919-35725570:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8191528320312	2	634.817561	1267.62057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.973	1	96.013	95.513	96.513	0.039772								0	0	0	0.33762	1	24164	24164		2.9952	0.26005	1				13349	6265	8839	8910	18087	18087					-0.002536059724889128
MNAVVQCL	8	Unmodified	_MNAVVQCL_					0	0	0		nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43	nc|ENSG00000154914|Q70EL4-4|USP43	nc|ENSG00000154914|Q70EL4-4|USP43	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.8628845214844	2	439.217149	876.419744	-0.31339	-0.00013765	-0.64218	-0.00028206	-0.95557	-0.0004197	439.21675066756353	40.746	0.63311	40.835	40.378	41.011	0.089645					29	24	2	0	0	0	0.3576	1	7270	7270		2.8892	0	1	49408			13350	3570	8840	8911	18088	18088					-0.023408752891555196
MNDGCVQWQ	9	Unmodified	_MNDGCVQWQ_					0	0	0		ENST00000416600.6_1_20:3852035-3852320:+|nuORF	ENST00000416600.6_1_20:3852035-3852320:+|nuORF	ENST00000416600.6_1_20:3852035-3852320:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7357788085938	2	540.715501	1079.41645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.632	1	86.659	86.159	87.159	0.027573								0	0	0	0.21527	1	21323	21323		15.847	5.0233	1				13351	6429	8841	8912	18089	18089					-0.12008170133822205
MNEKEVLIQ	9	Unmodified	_MNEKEVLIQ_					0	0	0			REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3098754882812	2	552.291899	1102.56925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.954	1	66.954	66.454	67.454	0								0	0	0	0.22786	1	15482	15482		13.906	3.8321	1		+		13352	9501	8842	8913	18090	18090					0.022063485344460787
MNFVFLWPS	9	Unmodified	_MNFVFLWPS_					0	0	0		ENST00000481456.1_1_6:31509017-31509095:-|nuORF	ENST00000481456.1_1_6:31509017-31509095:-|nuORF	ENST00000481456.1_1_6:31509017-31509095:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7935180664062	2	570.78097	1139.54739	0.14146	8.0745E-05	-2.0232	-0.0011548	-1.8817	-0.001074	571.2818969936479	36.328	0.27564	36.328	36.077	36.352	0					13	10	2	0	0	0	0.25875	1	6127	6127		1.8442	0.19162	1	19039			13353	6752	8843	8914	18091	18091					-0.016804114234446388
MNGEKQLMCW	10	Unmodified	_MNGEKQLMCW_					0	0	0			REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF	REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.2678833007812	2	620.269587	1238.52462	0.045127	2.7991E-05	-1.8623	-0.0011551	-1.8172	-0.0011271	620.2678299797764	55.689	0.48061	55.689	55.467	55.948	0					30	16	3	0	0	0	0.44246	1	12051	12051		6.2058	0.47393	1	129280	+		13354	8652	8844	8915	18092	18092					-0.08510121874905963
MNGEKQLMCW	10	Unmodified	_MNGEKQLMCW_					0	0	0			REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF	REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3076782226562	2	620.269587	1238.52462	0.059624	3.6983E-05	-2.4287	-0.0015064	-2.3691	-0.0014695	620.2681071850446	55.665	0.40551	55.73	55.574	55.98	0.065128					25	14	3	0	0	0	0.31731	1	11872	11872		6.2058	0.97511	1	122660	+		13355	8652	8844	8915	18093	18093					-0.08510121874905963
MNRRQFSKF	9	Unmodified	_MNRRQFSKF_					0	0	0			REV__ENSG00000105373|ENST00000246802|NOP53	REV__ENSG00000105373|ENST00000246802|NOP53	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7529296875	2	607.316574	1212.6186	0.71349	0.00043332	-0.79215	-0.00048109	-0.078658	-4.777E-05	607.3161031153604	76.254	0.74505	76.293	76.108	76.853	0.03923					54	29	3	0	0	0	0.24366	1	18252	18252		13.042	1.5478	1	1409600	+		13356	8539	8845	8916	18094	18094					0.020791013339021447
MNVFIHFFF	9	Unmodified	_MNVFIHFFF_					0	0	0			REV__tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	REV__tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.295654296875	2	601.296788	1200.57902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.03	1	25.127	24.627	25.627	0.096073								0	0	0	0.29233	1	2728	2728		0.6015	0.076735	1		+		13357	13172	8846	8917	18095	18095					-0.013244186695146709
MNWKRREG	8	Unmodified	_MNWKRREG_					0	0	0		ENST00000451368.1_1_7:26412040-26412175:-|nuORF	ENST00000451368.1_1_7:26412040-26412175:-|nuORF	ENST00000451368.1_1_7:26412040-26412175:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7774047851562	2	538.774542	1075.53453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.87	1	103.91	103.41	104.41	0.03791								0	0	0	0.38822	1	26543	26543		1.8442	0.19162	1				13358	6564	8847	8918	18096	18096					-0.00021429762978186773
MNWKTWPIF	9	Unmodified	_MNWKTWPIF_					0	0	0		MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant;nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM	MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.2189636230469	3	408.207438	1221.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.726	1	31.726	31.226	32.226	0								0	0	0	0.28314	1	4809	4809		2.4985	0.24576	1				13359	5702	8848	8919	18097	18097					-0.0014503364081974723
MNYAEYWYD	9	Unmodified	_MNYAEYWYD_					0	0	0			REV__ENSG00000121653|ENST00000241014|MAPK8IP1	REV__ENSG00000121653|ENST00000241014|MAPK8IP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.7418823242188	2	627.742239	1253.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.843	1	17.843	17.343	18.343	0								0	0	0	0.29303	1	1000	1000		0.45834	0.057624	1		+		13360	8901	8849	8920	18098	18098					-0.1466709415033165
MNYIQIPEF	9	Unmodified	_MNYIQIPEF_					0	0	0		ENST00000381061.8_1_22:46239551-46239644:+|nuORF	ENST00000381061.8_1_22:46239551-46239644:+|nuORF	ENST00000381061.8_1_22:46239551-46239644:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7828369140625	2	577.781167	1153.54778	0.7049	0.00040728	-0.25185	-0.00014551	0.45306	0.00026177	578.2821209416308	79.803	0.76804	79.803	79.372	80.14	0					68	26	4	0	0	0	0.27929	1	19358	19358		9.3831	0.78985	1	1138000			13361	6290	8850	8921	18099	18099					-0.022850364942542
MPAETIKEL	9	Unmodified	_MPAETIKEL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2755737304688	2	516.275718	1030.53688	0.37137	0.00019173	-0.50179	-0.00025906	-0.13042	-6.733E-05	516.2753187451439	46.964	0.27694	46.964	46.839	47.116	0					17	9	3	0	0	0	0.29334	1	9420	9420		7.609	4.0125	1	62164			13362	2197	8851	8922	18100	18100					0.022835611314576454
MPAETIKEL	9	Unmodified	_MPAETIKEL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.275390625	2	516.275718	1030.53688	0.32097	0.00016571	0.43283	0.00022346	0.7538	0.00038917	516.2757415905293	46.899	0.28939	46.982	46.835	47.124	0.083096					18	10	2	0	0	0	0.31086	1	9247	9247		5.2969	1.3525	1	48107			13363	2197	8851	8922	18101	18101					0.022835611314576454
MPAFIFEHI	9	Oxidation (M)	_M(Oxidation (M))PAFIFEHI_		M(1)PAFIFEHI		M(97)PAFIFEHI	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7785034179688	2	560.778428	1119.5423	0.56517	0.00031694	-1.1957	-0.00067051	-0.63051	-0.00035358	560.777883804868	69.208	1.8895	69.208	68.558	70.447	0					114	69	3	0	0	0	0.0043406	1	16183	16183		97.075	75.538	1	565010			13364	2859	8852	8923	18102	18102		185			-0.012687152860735296
MPAFIFEHI	9	Oxidation (M)	_M(Oxidation (M))PAFIFEHI_		M(1)PAFIFEHI		M(100)PAFIFEHI	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7784423828125	2	560.778428	1119.5423	0.36667	0.00020562	-0.55105	-0.00030901	-0.18438	-0.0001034	560.7781438524437	69.18	2.1229	69.242	68.331	70.454	0.062126					115	82	2	0	0	0	0.0037915	2	16023	15969;16023		104.8	74.574	1	573250			13365	2859	8852	8923	18103;18104	18104		185			-0.012687152860735296
MPAFIFEHI	9	Unmodified	_MPAFIFEHI_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7811279296875	2	552.78097	1103.54739	0.59696	0.00032999	-0.22826	-0.00012618	0.3687	0.00020381	552.780716042957	74.942	0.58437	74.942	74.767	75.352	0					47	21	3	0	0	0	0.00014496	2	17917	17917;17972		137.59	106.95	1	792790			13366	2859	8852	8924	18105;18106	18105					-0.00024411423441961233
MPAFIFEHI	9	Unmodified	_MPAFIFEHI_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.781005859375	2	552.78097	1103.54739	0.56678	0.0003133	0.0046272	2.5578E-06	0.5714	0.00031586	552.780818997143	74.941	0.68774	74.985	74.752	75.44	0.044037					56	24	3	0	0	0	0.0043406	3	17747	17747;17788;17798		97.075	75.328	1	827210			13367	2859	8852	8924	18107;18108;18109	18107					-0.00024411423441961233
MPCLPWFL	8	Unmodified	_MPCLPWFL_					0	0	0			REV__ENST00000414117.5_1_3:9982638-9982828:+|nuORF	REV__ENST00000414117.5_1_3:9982638-9982828:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.26409912109375	2	503.748085	1005.48162	0.44258	0.00022295	-3.354	-0.0016896	-2.9114	-0.0014666	503.746460602816	88.128	0.22819	88.128	88.004	88.232	0					11	8	2	0	0	0	0.35759	1	21909	21909		11.114	0	1	75786	+		13368	11791	8853	8925	18110	18110					-0.020905238700265727
MPDDLLTTL	9	Unmodified	_MPDDLLTTL_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.803955078125	2	509.759901	1017.50525	0.38659	0.00019707	0.58608	0.00029876	0.97267	0.00049583	509.76009052250504	81.771	0.37311	81.793	81.645	82.018	0.021866					26	12	3	0	0	0	0.24791	1	19899	19899		10.074	3.8681	1	120270			13369	2389	8854	8926	18111	18111					-0.002804316225024195
MPDELLTSL	9	Unmodified	_MPDELLTSL_					0	0	0		CASP8AP2|p.P1570S|1|0.22|ENSG00000118412|chr6:89867998-89867998|C/T|missense_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	CASP8AP2|p.P1570S|1|0.22|ENSG00000118412|chr6:89867998-89867998|C/T|missense_variant	CASP8AP2|p.P1570S|1|0.22|ENSG00000118412|chr6:89867998-89867998|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8036804199219	2	509.759901	1017.50525	0.41601	0.00021207	-0.86534	-0.00044111	-0.44932	-0.00022905	509.7593166076317	79.368	0.37893	79.368	79.157	79.536	0					18	12	2	0	0	0	0.2418	1	19290	19290		13.906	6.6168	1	69493			13370	107	8855	8927	18112	18112					-0.002804316225024195
MPDELLTSL	9	Unmodified	_MPDELLTSL_					0	0	0		CASP8AP2|p.P1570S|1|0.22|ENSG00000118412|chr6:89867998-89867998|C/T|missense_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	CASP8AP2|p.P1570S|1|0.22|ENSG00000118412|chr6:89867998-89867998|C/T|missense_variant	CASP8AP2|p.P1570S|1|0.22|ENSG00000118412|chr6:89867998-89867998|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8039245605469	2	509.759901	1017.50525	0.2014	0.00010267	-0.36021	-0.00018362	-0.15881	-8.0955E-05	509.7592496025984	79.329	0.35072	79.355	79.223	79.573	0.026436					24	12	3	0	0	0	0.24791	1	19132	19132		10.074	0	1	75279			13371	107	8855	8927	18113	18113					-0.002804316225024195
MPDENIFLF	9	Unmodified	_MPDENIFLF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT;ENST00000563893.5_1_16:29874076-29874319:-|nuORF;ENST00000564296.5_1_16:29872547-29874223:-|nuORF;ENST00000562041.1_1_16:29874076-29874319:-|nuORF	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2694091796875	2	563.267893	1124.52123	0.58993	0.00033229	-0.50194	-0.00028273	0.087989	4.9561E-05	563.2679335201171	92.655	0.67318	92.655	92.405	93.078	0					54	25	3	0	0	0	0.19398	1	23273	23273		19.257	1.122	1	205000			13372	1375	8856	8928	18114	18114					-0.03604725385616803
MPDENIFLF	9	Unmodified	_MPDENIFLF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT;ENST00000563893.5_1_16:29874076-29874319:-|nuORF;ENST00000564296.5_1_16:29872547-29874223:-|nuORF;ENST00000562041.1_1_16:29874076-29874319:-|nuORF	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	563.267893	1124.52123	0.59755	0.00033658	-0.60676	-0.00034177	-0.0092082	-5.1867E-06	563.2676041711625	92.649	0.80614	92.686	92.371	93.177	0.03653	0.015449	-5.539E-05	NaN	19.257	49	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155470			13373	1375	8856	8928							-0.03604725385616803
MPDFDLHL	8	Unmodified	_MPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.23382568359375	2	494.233853	986.453153	0.33131	0.00016375	0.0047606	2.3528E-06	0.33607	0.0001661	494.233775730344	71.755	1.5241	71.755	71.329	72.853	0					128	53	4	0	0	0	0.023236	6	17006	16864;16910;16955;17006;17057;17114		129.2	62.165	1	2220600			13374	2279	8857	8929	18115;18116;18117;18118;18119;18120	18118					-0.04061550245603485
MPDFDLHL	8	Unmodified	_MPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2337341308594	2	494.233853	986.453153	0.30366	0.00015008	0.061672	3.0481E-05	0.36533	0.00018056	494.2338134821519	71.587	1.4363	71.645	71.288	72.724	0.058578					113	50	3	0	0	0	0.020479	5	16827	16689;16734;16782;16827;16920		129.2	62.165	1	2690500			13375	2279	8857	8929	18121;18122;18123;18124;18125	18124					-0.04061550245603485
MPDFDLHL	8	Oxidation (M)	_M(Oxidation (M))PDFDLHL_		M(1)PDFDLHL		M(150)PDFDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2314453125	2	502.23131	1002.44807	0.50592	0.00025409	-0.96478	-0.00048454	-0.45886	-0.00023046	502.23121026771986	65.641	2.8673	65.708	64.687	67.554	0.066872					288	108	4	0	0	0	0.021936	8	14925	14782;14838;14883;14925;14975;15023;15074;15145		153.26	67.141	1	1940500			13376	2279	8857	8930	18126;18127;18128;18129;18130;18131;18132;18133	18129		141			-0.053058541082123156
MPDFDLHL	8	Oxidation (M)	_M(Oxidation (M))PDFDLHL_					0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	502.23131	1002.44807	0.64601	0.00032445	-1.2151	-0.00061027	-0.5691	-0.00028582	502.2311207341102	65.788	3.3954	65.788	64.816	68.211	0	0.03978	-9.6346E-05	NaN	153.26	327	127	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1838900			13377	2279	8857	8930				141			-0.053058541082123156
MPDFDLNL	8	Unmodified	_MPDFDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7258605957031	2	482.725861	963.437169	0.15669	7.564E-05	0.052621	2.5401E-05	0.20931	0.00010104	482.7257155170359	82.913	0.62814	82.913	82.651	83.279	0					35	21	2	0	0	0	0.46914	2	20346	20346;20395		16.942	3.4344	1	120960			13378	2279	8858	8931	18134;18135	18134					-0.04601256482521876
MPDFDLNL	8	Unmodified	_MPDFDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7254943847656	2	482.725861	963.437169	0.031518	1.5214E-05	0.27423	0.00013238	0.30575	0.00014759	482.72585724360874	82.876	0.7717	82.897	82.589	83.361	0.021751					40	26	2	0	0	0	0.43379	2	20171	20171;20222		21.747	8.2388	1	140610			13379	2279	8858	8931	18136;18137	18136					-0.04601256482521876
MPDFDVARI	9	Oxidation (M)	_M(Oxidation (M))PDFDVARI_		M(1)PDFDVARI		M(51)PDFDVARI	0	0	1		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant;ENST00000573603.1_1_17:7412268-7412987:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2631225585938	2	540.263142	1078.51173	0.3756	0.00020292	-0.13129	-7.0929E-05	0.24431	0.00013199	540.2629652138407	58.071	0.78314	58.071	57.434	58.217	0					50	27	2	0	0	0	0.029591	2	12716	12716;12777		51.415	36.577	1	240520			13380	4832	8859	8932	18138;18139	18138		282			-0.024384936711157934
MPDFDVARI	9	Oxidation (M)	_M(Oxidation (M))PDFDVARI_		M(1)PDFDVARI		M(44)PDFDVARI	0	0	1		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant;ENST00000573603.1_1_17:7412268-7412987:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2628784179688	2	540.263142	1078.51173	0.43138	0.00023306	-0.11445	-6.1833E-05	0.31693	0.00017122	540.2630589215667	57.929	1.1537	57.997	57.437	58.591	0.068375					64	42	2	0	0	0	0.047066	1	12609	12609		43.982	30.076	1	181680			13381	4832	8859	8932	18140	18140		282			-0.024384936711157934
MPDFDVARI	9	Unmodified	_MPDFDVARI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant;ENST00000573603.1_1_17:7412268-7412987:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.26611328125	2	532.265684	1062.51682	0.57444	0.00030576	0.44245	0.0002355	1.0169	0.00054125	532.266187596633	64.247	0.69584	64.318	63.914	64.61	0.071022					55	24	3	0	0	0	0.078774	2	14528	14477;14528		37.075	21.227	1	278050			13382	4832	8859	8933	18141;18142	18142					-0.011941898085069624
MPDGQFKDISL	11	Oxidation (M)	_M(Oxidation (M))PDGQFKDISL_		M(1)PDGQFKDISL		M(70)PDGQFKDISL	0	0	1		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8054809570312	2	633.805371	1265.59619	0.39051	0.00024751	0.042245	2.6775E-05	0.43275	0.00027428	633.8052335989621	55.294	1.2667	55.294	54.768	56.035	0					120	45	4	0	0	0	0.014846	3	11960	11866;11910;11960		112.95	72.707	1	791250			13383	2002	8860	8934	18143;18144;18145	18145		121			-0.025985876450249634
MPDGQFKDISL	11	Oxidation (M)	_M(Oxidation (M))PDGQFKDISL_		M(1)PDGQFKDISL		M(87)PDGQFKDISL	0	0	1		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8055419921875	2	633.805371	1265.59619	0.1186	7.5168E-05	2.5497	0.001616	2.6683	0.0016912	633.8054166159504	56.63	2.0693	56.63	55.866	57.935	0					225	75	5	0	0	0	0.0058552	4	12324	12225;12271;12324;12371		97.284	54.338	1	1174500			13384	2002	8860	8934	18146;18147;18148;18149	18148		121			-0.025985876450249634
MPDGQFKDISL	11	Oxidation (M)	_M(Oxidation (M))PDGQFKDISL_		M(1)PDGQFKDISL		M(89)PDGQFKDISL	0	0	1		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8054809570312	2	633.805371	1265.59619	0.45631	0.00028921	-0.20939	-0.00013271	0.24693	0.0001565	633.8050894834576	55.265	1.0191	55.33	54.903	55.922	0.065128					101	38	4	0	0	0	0.0073659	3	11775	11734;11775;11819		88.576	54.174	1	602740			13385	2002	8860	8934	18150;18151;18152	18151		121			-0.025985876450249634
MPDGQFKDISL	11	Oxidation (M)	_M(Oxidation (M))PDGQFKDISL_		M(1)PDGQFKDISL		M(91)PDGQFKDISL	0	0	1		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8054809570312	2	633.805371	1265.59619	0.22108	0.00014012	0.026139	1.6567E-05	0.24722	0.00015669	633.8053546428721	56.399	1.7566	56.466	55.789	57.545	0.066452					122	66	2	0	0	0	0.0098508	5	12157	12060;12109;12157;12200;12208		94.801	58.927	1	873170			13386	2002	8860	8934	18153;18154;18155;18156;18157	18155		121			-0.025985876450249634
MPDGQFKDISL	11	Unmodified	_MPDGQFKDISL_					0	0	0		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.8079223632812	2	625.807913	1249.60127	0.15191	9.5067E-05	0.15637	9.786E-05	0.30829	0.00019293	625.807906109101	61.251	0.78782	61.251	60.72	61.508	0					76	28	4	0	0	0	0.017434	2	13735	13735;13776		119.6	73.903	1	987000			13387	2002	8860	8935	18158;18159	18158					-0.01354283782393395
MPDGQFKDISL	11	Unmodified	_MPDGQFKDISL_					0	0	0		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.8080444335938	2	625.807913	1249.60127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.649	1	61.649	61.149	62.149	0								0	0	0	0.32571	1	13861	13861		5.7834	0.88642	1				13388	2002	8860	8935	18160	18160					-0.01354283782393395
MPDGQFKDISL	11	Unmodified	_MPDGQFKDISL_					0	0	0		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.8081665039062	2	625.807913	1249.60127	0.23819	0.00014906	0.007643	4.783E-06	0.24583	0.00015384	625.8077735082666	61.217	0.7907	61.29	60.747	61.537	0.073418					63	32	3	0	0	0	0.01312	3	13580	13514;13580;13626		72.276	39.491	1	834410			13389	2002	8860	8935	18161;18162;18163	18162					-0.01354283782393395
MPDGQFKDISL	11	Unmodified	_MPDGQFKDISL_					0	0	0		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.8075561523438	2	625.807913	1249.60127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.518	1	61.591	61.091	62.091	0.073421								0	0	0	0.31286	1	13681	13681		10.315	3.2135	1				13390	2002	8860	8935	18164	18164					-0.01354283782393395
MPDIDFNL	8	Oxidation (M)	_M(Oxidation (M))PDIDFNL_		M(1)PDIDFNL		M(42)PDIDFNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7232666015625	2	490.723318	979.432083	0.41614	0.00020421	-0.099784	-4.8966E-05	0.31635	0.00015524	490.7231974659582	75.189	1.4121	75.189	74.199	75.611	0					94	52	2	0	0	0	0.20402	1	18031	18031		42.095	23.96	1	492720			13391	2279	8861	8936	18165	18165		142			-0.058455603451079696
MPDIDFNL	8	Oxidation (M)	_M(Oxidation (M))PDIDFNL_		M(1)PDIDFNL		M(42)PDIDFNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7230529785156	2	490.723318	979.432083	0.32209	0.00015806	-0.11297	-5.5437E-05	0.20912	0.00010262	490.72315642919995	76.251	0.97807	76.29	76.068	77.046	0.039238					60	39	2	0	0	0	0.20402	1	18194	18194		42.095	18.946	1	422220			13392	2279	8861	8936	18166	18166		142			-0.058455603451079696
MPDIDFNL	8	Oxidation (M)	_M(Oxidation (M))PDIDFNL_					0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	490.723318	979.432083	0.31617	0.00015515	-0.1154	-5.6628E-05	0.20077	9.8524E-05	490.72314100304203	76.401	0.9171	76.401	76.195	77.112	0	0.055086	-1.4888E-06	NaN	42.095	56	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379070			13393	2279	8861	8936				142			-0.058455603451079696
MPDIDFNL	8	Unmodified	_MPDIDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.72576904296875	2	482.725861	963.437169	0.40242	0.00019426	0.25674	0.00012394	0.65916	0.0003182	482.7256798021105	82.045	0.79201	82.045	81.69	82.482	0					55	27	3	0	0	0	0.15358	4	20080	20036;20080;20132;20184		46.021	27.886	1	263340			13394	2279	8861	8937	18167;18168;18169;18170	18168					-0.04601256482499139
MPDIDFNL	8	Unmodified	_MPDIDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7258605957031	2	482.725861	963.437169	0.082987	4.006E-05	0.57772	0.00027888	0.66071	0.00031894	482.7258307143378	82.013	0.80003	82.035	81.737	82.537	0.021866					58	28	3	0	0	0	0.30669	3	19918	19866;19918;19973		34.102	15.967	1	270280			13395	2279	8861	8937	18171;18172;18173	18172					-0.04601256482499139
MPDIIIKAL	9	Unmodified	_MPDIIIKAL_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000463808.1_1_16:2122597-2124590:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.27935791015625	2	507.306821	1012.59909	0.46225	0.0002345	-0.45715	-0.00023192	0.005099	2.5867E-06	507.3064325391889	70.504	0.56239	70.504	70.243	70.806	0					34	20	3	0	0	0	0.13369	1	16540	16540		40.239	13.971	1	241950			13396	1356	8862	8938	18174	18174					0.09329332270431223
MPDIIIKAL	9	Unmodified	_MPDIIIKAL_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000463808.1_1_16:2122597-2124590:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2795104980469	2	507.306821	1012.59909	0.49177	0.00024948	-0.15892	-8.0619E-05	0.33286	0.00016886	507.306638767643	70.404	0.4767	70.464	70.279	70.756	0.060562					29	18	2	0	0	0	0.13369	1	16369	16369		40.239	13.971	1	201240			13397	1356	8862	8938	18175	18175					0.09329332270431223
MPDLDLHL	8	Oxidation (M)	_M(Oxidation (M))PDLDLHL_		M(1)PDLDLHL		M(64)PDLDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2388610839844	2	485.239135	968.463718	0.14159	6.8704E-05	-0.28304	-0.00013734	-0.14145	-6.8638E-05	485.23903447670966	61.072	1.1355	61.072	60.282	61.418	0					62	40	2	0	0	0	0.043804	1	13620	13620		63.563	13.894	1	146520			13398	2279	8863	8939	18176	18176		143			-0.021775675911499093
MPDLDLHL	8	Oxidation (M)	_M(Oxidation (M))PDLDLHL_		M(1)PDLDLHL		M(82)PDLDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.239013671875	2	485.239135	968.463718	0.14105	6.8445E-05	-0.011266	-5.4667E-06	0.12979	6.2978E-05	485.23900228533574	62.87	1.0756	62.87	62.067	63.142	0					71	40	2	0	0	0	0.016	2	14216	14164;14216		81.864	41.415	1	211940			13399	2279	8863	8939	18177;18178	18178		143			-0.021775675911499093
MPDLDLHL	8	Oxidation (M)	_M(Oxidation (M))PDLDLHL_		M(1)PDLDLHL		M(44)PDLDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2392883300781	2	485.239135	968.463718	-0.0085063	-4.1276E-06	0.082799	4.0177E-05	0.074293	3.605E-05	485.2390712040728	60.724	1.1295	60.798	60.306	61.435	0.073421					58	38	2	0	0	0	0.17432	1	13452	13452		44.407	18.066	1	144620			13400	2279	8863	8939	18179	18179		143			-0.021775675911499093
MPDLDLHL	8	Oxidation (M)	_M(Oxidation (M))PDLDLHL_		M(1)PDLDLHL		M(44)PDLDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2393798828125	2	485.239135	968.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.241	1	62.314	61.814	62.814	0.073421								0	0	0	0.27848	1	13901	13901		44.407	18.066	1				13401	2279	8863	8939	18180	18180		143			-0.021775675911499093
MPDLDLHL	8	Oxidation (M)	_M(Oxidation (M))PDLDLHL_		M(1)PDLDLHL		M(71)PDLDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.23846435546875	2	485.239135	968.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.411	1	62.484	61.984	62.984	0.072701								0	0	0	0.13585	1	13953	13953		70.716	30.267	1				13402	2279	8863	8939	18181	18181		143			-0.021775675911499093
MPDLDLHL	8	Unmodified	_MPDLDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2414855957031	2	477.241678	952.468803	0.2475	0.00011812	-0.23061	-0.00011006	0.016888	8.0598E-06	477.24151928502147	69.202	0.68967	69.202	68.983	69.672	0					36	23	2	0	0	0	0.20402	1	16175	16175		42.095	11.87	1	394880			13403	2279	8863	8940	18182	18182					-0.009332637285410783
MPDLDLHL	8	Unmodified	_MPDLDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2413330078125	2	477.241678	952.468803	-0.067804	-3.2359E-05	0.060963	2.9094E-05	-0.0068407	-3.2647E-06	477.24160498306435	69.205	0.7287	69.267	68.968	69.696	0.062126					39	26	2	0	0	0	0.12247	2	16015	16015;16069		50.855	12.704	1	389500			13404	2279	8863	8940	18183;18184	18183					-0.009332637285410783
MPDLDLNL	8	Unmodified	_MPDLDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7336120605469	2	465.733686	929.452819	0.11789	5.4907E-05	0.02217	1.0325E-05	0.14006	6.5232E-05	465.7335593733963	78.775	1.0211	78.805	78.476	79.497	0.030159					83	35	4	0	0	0	0.098215	1	18942	18942		54.774	0	1	977700			13405	2279	8864	8941	18185	18185					-0.014729699654594697
MPDLENRVL	9	Oxidation (M)	_M(Oxidation (M))PDLENRVL_		M(1)PDLENRVL		M(57)PDLENRVL	0	0	1		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7817993164062	2	551.781699	1101.54884	0.33957	0.00018737	0.090351	4.9854E-05	0.42992	0.00023722	551.7817497717547	46.726	0.36005	46.726	46.607	46.967	0					32	18	2	0	0	0	0.02143	1	9322	9322		57.249	39.103	1	212590			13406	5042	8865	8942	18186	18186		293			0.002131778746161217
MPDLENRVL	9	Oxidation (M)	_M(Oxidation (M))PDLENRVL_		M(1)PDLENRVL		M(44)PDLENRVL	0	0	1		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7816772460938	2	551.781699	1101.54884	0.50642	0.00027944	-0.81376	-0.00044902	-0.30733	-0.00016958	551.7815504457002	47.237	0.73983	47.237	46.967	47.707	0					61	24	4	0	0	0	0.047066	1	9451	9451		43.982	30.939	1	224940			13407	5042	8865	8942	18187	18187		293			0.002131778746161217
MPDLENRVL	9	Oxidation (M)	_M(Oxidation (M))PDLENRVL_		M(1)PDLENRVL		M(65)PDLENRVL	0	0	1		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7808837890625	2	551.781699	1101.54884	0.29465	0.00016258	-1.133	-0.00062517	-0.83836	-0.00046259	551.7811441638785	48.759	1.8066	48.759	48.07	49.876	0					133	62	3	0	0	0	0.010553	2	9957	9879;9957		65.474	41.453	1	282620			13408	5042	8865	8942	18188;18189	18189		293			0.002131778746161217
MPDLENRVL	9	Unmodified	_MPDLENRVL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.784423828125	2	543.784241	1085.55393	0.49397	0.00026861	0.16485	8.9641E-05	0.65882	0.00035825	543.7842553852204	55.37	0.54572	55.436	55.242	55.787	0.065128					35	20	2	0	0	0	0.0051624	1	11809	11809		93.166	65.537	1	639950			13409	5042	8865	8943	18190	18190					0.0145748173724769
MPDLENRVL	9	Unmodified	_MPDLENRVL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	543.784241	1085.55393	0.52636	0.00028623	0.02037	1.1077E-05	0.54673	0.0002973	543.7842633912369	55.434	0.59221	55.434	55.19	55.782	0	-0.00079917	-3.9383E-05	NaN	93.166	51	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825000			13410	5042	8865	8943							0.0145748173724769
MPDLPEKL	8	Oxidation (M)	_M(Oxidation (M))PDLPEKL_		M(1)PDLPEKL		M(56)PDLPEKL	0	0	1		nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.74908447265625	2	479.749336	957.484119	-0.19872	-9.5335E-05	0.21224	0.00010182	0.013518	6.485E-06	479.7493312089377	46.5	1.8118	46.5	45.358	47.17	0					131	76	3	0	0	0	0.093701	4	9218	9132;9172;9218;9265		55.503	40.664	1	582840			13411	7498	8866	8944	18191;18192;18193;18194	18193		333			0.0036760306865062375
MPDLPEKL	8	Oxidation (M)	_M(Oxidation (M))PDLPEKL_		M(1)PDLPEKL		M(64)PDLPEKL	0	0	1		nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7494201660156	2	479.749336	957.484119	0.049059	2.3536E-05	0.14522	6.967E-05	0.19428	9.3207E-05	479.7492173616839	47.981	2.1933	47.981	47.06	49.253	0					156	75	3	0	0	0	0.041342	5	9679	9628;9679;9725;9773;9826		63.961	43.507	1	467190			13412	7498	8866	8944	18195;18196;18197;18198;18199	18196		333			0.0036760306865062375
MPDLPEKL	8	Oxidation (M)	_M(Oxidation (M))PDLPEKL_		M(1)PDLPEKL		M(58)PDLPEKL	0	0	1		nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7492370605469	2	479.749336	957.484119	-0.15366	-7.3719E-05	0.34466	0.00016535	0.191	9.1632E-05	479.74937487552506	46.426	1.7855	46.512	45.395	47.18	0.085621					105	80	2	0	0	0	0.079963	4	9049	8905;9003;9049;9120		57.722	38.465	1	433760			13413	7498	8866	8944	18200;18201;18202;18203	18202		333			0.0036760306865062375
MPDLPEKL	8	Oxidation (M)	_M(Oxidation (M))PDLPEKL_		M(1)PDLPEKL		M(56)PDLPEKL	0	0	1		nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7493896484375	2	479.749336	957.484119	0.18956	9.0939E-05	0.027318	1.3106E-05	0.21687	0.00010405	479.74917605973116	47.848	1.8846	47.928	47.175	49.059	0.080032					156	69	3	0	0	0	0.093701	6	9502	9408;9455;9502;9554;9596;9641		55.503	35.049	1	349180			13414	7498	8866	8944	18204;18205;18206;18207;18208;18209	18206		333			0.0036760306865062375
MPDLPEKL	8	Unmodified	_MPDLPEKL_					0	0	0		nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7520751953125	2	471.751879	941.489204	0.3894	0.0001837	0.47988	0.00022638	0.86928	0.00041008	471.75185441031186	54.712	0.72265	54.712	54.467	55.19	0					74	31	4	0	0	0	0.049934	4	11745	11698;11745;11790;11844		62.573	34.086	1	1229600			13415	7498	8866	8945	18210;18211;18212;18213	18211					0.016119069312708234
MPDLPEKL	8	Unmodified	_MPDLPEKL_					0	0	0		nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.75201416015625	2	471.751879	941.489204	0.33733	0.00015914	0.24094	0.00011366	0.57827	0.0002728	471.7518591058084	54.64	0.80749	54.705	54.485	55.292	0.065128					82	38	3	0	0	0	0.01597	3	11605	11561;11605;11650		81.89	47.788	1	904770			13416	7498	8866	8945	18214;18215;18216	18215					0.016119069312708234
MPDNTAAQKV	10	Unmodified	_MPDNTAAQKV_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7659301757812	2	537.766049	1073.51754	-0.080069	-4.3058E-05	-0.16368	-8.802E-05	-0.24375	-0.00013108	537.7659576586452	29.211	0.59738	29.211	28.991	29.588	0					90	34	4	0	0	0	0.29785	1	4073	4073		24.882	18.676	1	108660			13417	1188;2625	8867	8946	18217	18217					-0.01627395159448497
MPDNTAAQKV	10	Unmodified	_MPDNTAAQKV_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7659912109375	2	537.766049	1073.51754	0.088785	4.7745E-05	-0.49517	-0.00026628	-0.40638	-0.00021854	537.765964372434	29.144	0.60132	29.222	28.992	29.593	0.078287					102	37	4	0	0	0	0.31481	1	3934	3934		15.248	8.5253	1	100570			13418	1188;2625	8867	8946	18218	18218					-0.01627395159448497
MPDPWAEFHL	10	Oxidation (M)	_M(Oxidation (M))PDPWAEFHL_		M(1)PDPWAEFHL		M(120)PDPWAEFHL	0	0	1		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.78173828125	2	629.781699	1257.54884	0.16665	0.00010495	0.14175	8.927E-05	0.3084	0.00019422	629.7815493256384	77.162	0.62276	77.162	76.647	77.27	0					55	22	3	0	0	0	4.0214E-05	3	18551	18501;18551;18612		118.89	100.75	1	699940			13419	1363	8868	8947	18219;18220;18221	18220		84			-0.06962822125387902
MPDPWAEFHL	10	Oxidation (M)	_M(Oxidation (M))PDPWAEFHL_		M(1)PDPWAEFHL		M(72)PDPWAEFHL	0	0	1		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.7813110351562	2	629.781699	1257.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.842	1	75.842	75.342	76.342	0								0	0	0	0.02272	1	18192	18192		71.922	50.176	1				13420	1363	8868	8947	18222	18222		84			-0.06962822125387902
MPDPWAEFHL	10	Oxidation (M)	_M(Oxidation (M))PDPWAEFHL_		M(1)PDPWAEFHL		M(110)PDPWAEFHL	0	0	1		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.7813110351562	2	629.781699	1257.54884	0.40416	0.00025453	0.26919	0.00016953	0.67335	0.00042407	629.7817199191604	77.08	0.94823	77.115	76.573	77.522	0.034485					65	39	3	0	0	0	5.4648E-05	2	18391	18340;18391		107.19	88.814	1	515030			13421	1363	8868	8947	18223;18224	18224		84			-0.06962822125387902
MPDPWAEFHL	10	Oxidation (M)	_M(Oxidation (M))PDPWAEFHL_		M(1)PDPWAEFHL		M(72)PDPWAEFHL	0	0	1		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.7818603515625	2	629.781699	1257.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.967	1	76.006	75.506	76.506	0.03923								0	0	0	0.02272	1	18072	18072		71.922	52.665	1				13422	1363	8868	8947	18225	18225		84			-0.06962822125387902
MPDPWAEFHL	10	Unmodified	_MPDPWAEFHL_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7848510742188	2	621.784241	1241.55393	0.31013	0.00019283	0.48822	0.00030357	0.79835	0.0004964	621.7847663714125	81.953	1.6175	81.953	81.662	83.279	0					95	56	3	0	0	0	0.00053338	2	20057	20057;20107		96.111	67.029	1	651260			13423	1363	8868	8948	18226;18227	18226					-0.057185182627563336
MPDPWAEFHL	10	Unmodified	_MPDPWAEFHL_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.784912109375	2	621.784241	1241.55393	0.13097	8.1436E-05	0.49957	0.00031062	0.63054	0.00039206	621.7848821971638	81.966	1.0272	81.988	81.708	82.735	0.021866					72	36	4	0	0	0	0.00053338	2	19901	19901;19951		96.111	76.749	1	501840			13424	1363	8868	8948	18228;18229	18228					-0.057185182627563336
MPDVDFNL	8	Oxidation (M)	_M(Oxidation (M))PDVDFNL_		M(1)PDVDFNL		M(42)PDVDFNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.716064453125	2	483.715493	965.416433	0.25442	0.00012307	0.77042	0.00037267	1.0248	0.00049573	483.7154622976595	70.185	1.4672	70.185	69.319	70.786	0					121	52	3	0	0	0	0.20402	1	16402	16402		42.095	18.946	1	353270			13425	2279	8869	8949	18230	18230		144			-0.06765846862163016
MPDVDFNL	8	Unmodified	_MPDVDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.7182312011719	2	475.718036	949.421518	0.071654	3.4087E-05	-0.12726	-6.054E-05	-0.055606	-2.6453E-05	475.71785713326733	76.768	0.64502	76.768	76.467	77.112	0					41	22	2	0	0	0	0.39599	2	18465	18465;18516		26.884	14.352	1	240720			13426	2279	8869	8950	18231;18232	18231					-0.055215429995541854
MPDVDFNL	8	Unmodified	_MPDVDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.7181701660156	2	475.718036	949.421518	0.10038	4.7754E-05	-0.1606	-7.6403E-05	-0.060222	-2.8649E-05	475.7178860583369	76.76	0.56577	76.799	76.526	77.092	0.03923					36	20	2	0	0	0	0.43379	2	18281	18281;18343		21.747	9.2151	1	187050			13427	2279	8869	8950	18233;18234	18233					-0.055215429995541854
MPDVDLHL	8	Oxidation (M)	_M(Oxidation (M))PDVDLHL_		M(1)PDVDLHL		M(85)PDVDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2312316894531	2	478.23131	954.448068	0.30235	0.00014459	0.8096	0.00038718	1.112	0.00053177	478.2316938674725	54.496	2.4366	54.496	52.729	55.166	0					191	97	3	0	0	0	0.016822	8	11882	11462;11507;11652;11694;11737;11782;11834;11882		123.1	59.533	1	1074200			13428	2279	8870	8951	18235;18236;18237;18238;18239;18240;18241;18242	18242		145			-0.030978541082163247
MPDVDLHL	8	Oxidation (M)	_M(Oxidation (M))PDVDLHL_		M(1)PDVDLHL		M(78)PDVDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2313537597656	2	478.23131	954.448068	0.069293	3.3138E-05	0.15345	7.3383E-05	0.22274	0.00010652	478.2312714546419	56.101	3.1056	56.101	55.112	58.217	0					282	112	3	0	0	0	0.020479	12	11926	11926;11976;12027;12071;12112;12157;12207;12257;12304;12346;12396;12457		153.26	63.189	1	1896300			13429	2279	8870	8951	18243;18244;18245;18246;18247;18248;18249;18250;18251;18252;18253;18254	18243		145			-0.030978541082163247
MPDVDLHL	8	Oxidation (M)	_M(Oxidation (M))PDVDLHL_		M(1)PDVDLHL		M(78)PDVDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2315673828125	2	478.23131	954.448068	0.28646	0.00013699	0.41732	0.00019958	0.70378	0.00033657	478.23138060887163	54.47	1.6121	54.535	53.656	55.268	0.065128					176	71	3	0	0	0	0.020479	8	11308	11308;11356;11501;11541;11586;11634;11683;11750		123.1	59.533	1	914990			13430	2279	8870	8951	18255;18256;18257;18258;18259;18260;18261;18262	18255		145			-0.030978541082163247
MPDVDLHL	8	Oxidation (M)	_M(Oxidation (M))PDVDLHL_		M(1)PDVDLHL		M(78)PDVDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2312316894531	2	478.23131	954.448068	0.0014952	7.1507E-07	0.17852	8.5375E-05	0.18002	8.609E-05	478.23128065037355	56.088	2.8627	56.155	55.269	58.132	0.066452					237	108	3	0	0	0	0.020479	11	11794	11794;11853;11901;11950;11992;12040;12086;12133;12182;12235;12282		137.59	63.189	1	1794400			13431	2279	8870	8951	18263;18264;18265;18266;18267;18268;18269;18270;18271;18272;18273	18263		145			-0.030978541082163247
MPDVDLHL	8	Unmodified	_MPDVDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2339172363281	2	470.233853	938.453153	0.29105	0.00013686	-0.10163	-4.7789E-05	0.18942	8.9072E-05	470.2336771984005	62.906	1.3496	62.906	62.494	63.844	0					115	49	4	0	0	0	0.016822	7	14269	14171;14221;14269;14317;14371;14420;14511		97.075	70.733	1	2071900			13432	2279	8870	8952	18274;18275;18276;18277;18278;18279;18280	18276					-0.018535502456074937
MPDVDLHL	8	Unmodified	_MPDVDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2338562011719	2	470.233853	938.453153	0.12882	6.0577E-05	-0.010139	-4.7678E-06	0.11868	5.5809E-05	470.23374651811355	62.788	1.2559	62.861	62.478	63.734	0.072701					109	48	3	0	0	0	0.016822	6	14104	14008;14056;14104;14147;14191;14238		123.1	80.128	1	1520400			13433	2279	8870	8952	18281;18282;18283;18284;18285;18286	18283					-0.018535502456074937
MPDVDLHL	8	Unmodified	_MPDVDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2336120605469	2	470.233853	938.453153	0.17893	8.4139E-05	0.45295	0.00021299	0.63188	0.00029713	470.2336673736133	63.901	0.22548	63.972	63.829	64.055	0.071014					11	7	2	0	0	0	0.53423	1	14417	14417		5.2307	1.9494	1	66488			13434	2279	8870	8952	18287	18287					-0.018535502456074937
MPDVELNL	8	Unmodified	_MPDVELNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.73358154296875	2	465.733686	929.452819	0.26422	0.00012305	-0.010024	-4.6687E-06	0.25419	0.00011839	465.73352822558604	78.755	0.86347	78.755	78.479	79.342	0					72	29	3	0	0	0	0.12247	3	19109	19109;19159;19204		50.855	0	1	788790			13435	2279	8871	8953	18288;18289;18290	18288					-0.014729699654594697
MPDVELNL	8	Unmodified	_MPDVELNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.73358154296875	2	465.733686	929.452819	0.11789	5.4907E-05	0.02217	1.0325E-05	0.14006	6.5232E-05	465.7335593733963	78.775	1.0211	78.805	78.476	79.497	0.030159					83	35	4	0	0	0	0.20402	1	18992	18992		42.095	0	1	977700			13436	2279	8871	8953	18291	18291					-0.014729699654594697
MPDVVVRSF	9	Unmodified	_MPDVVVRSF_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.254638671875	2	525.276052	1048.53755	0.28063	0.00014741	0.57279	0.00030087	0.85342	0.00044828	525.276006023725	57.329	0.31211	57.397	57.265	57.577	0.068371					17	12	2	0	0	0	0.24942	1	12443	12443		10.151	4.3901	1	89934			13437	3763	8872	8954	18292	18292					0.015224005711615973
MPDVVVRSF	9	Unmodified	_MPDVVVRSF_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	525.276052	1048.53755	0.40247	0.00021141	-0.061401	-3.2253E-05	0.34107	0.00017915	525.2759023949316	57.439	0.27456	57.439	57.267	57.541	0	0.020775	-0.00027804	NaN	10.151	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85083			13438	3763	8872	8954							0.015224005711615973
MPDWFEAKL	9	Unmodified	_MPDWFEAKL_					0	0	0		TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant;ENSG00000059588|ENST00000040877|TARBP1	TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7759399414062	2	568.775885	1135.53722	-0.075202	-4.2773E-05	0.29271	0.00016649	0.21751	0.00012371	568.7759552554674	72.399	0.37698	72.399	72.228	72.605	0					19	12	2	0	0	0	0.13554	1	17148	17148		26.021	17.865	1	184850			13439	635	8873	8955	18293	18293					-0.02513019148705098
MPDWFEAKL	9	Unmodified	_MPDWFEAKL_					0	0	0		TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant;ENSG00000059588|ENST00000040877|TARBP1	TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.775885	1135.53722	0.1106	6.2907E-05	-0.44329	-0.00025213	-0.33269	-0.00018923	568.7757580796956	72.36	0.54227	72.416	72.152	72.694	0.055939	0.0084564	-0.00053317	NaN	26.021	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165130			13440	635	8873	8955							-0.02513019148705098
MPEDLVEAL	9	Unmodified	_MPEDLVEAL_					0	0	0		ENST00000515235.6_1_5:118788237-118827866:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7606506347656	2	508.752075	1015.4896	0.29695	0.00015107	-1.1008	-0.00056002	-0.80382	-0.00040895	508.75127288856004	76.598	0.3623	76.598	76.445	76.807	0					17	12	2	0	0	0	0.18364	1	18460	18460		20.454	3.5113	1	129280			13441	2638	8874	8956	18294	18294					-0.017527181395621483
MPEIFFQM	8	Unmodified	_MPEIFFQM_					0	0	0		nc|ENSG00000110344|Q14139-2|UBE4A;ENSG00000110344|ENST00000252108|UBE4A;UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	nc|ENSG00000110344|Q14139-2|UBE4A	nc|ENSG00000110344|Q14139-2|UBE4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7406005859375	2	521.740457	1041.46636	0.43861	0.00022884	-0.35285	-0.0001841	0.085761	4.4745E-05	521.7402979774909	55.722	0.59694	55.722	55.497	56.094	0					40	20	3	0	0	0	0.4772	1	12038	12038		15.847	0	1	252500			13442	1663	8875	8957	18295	18295					-0.05271435457871121
MPEKEPSVL	9	Oxidation (M)	_M(Oxidation (M))PEKEPSVL_		M(1)PEKEPSVL		M(56)PEKEPSVL	0	0	1		nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF	nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2655639648438	2	523.26535	1044.51615	0.11804	6.1769E-05	-0.010847	-5.6758E-06	0.1072	5.6093E-05	523.265305838646	35.679	1.0963	35.679	35.088	36.184	0					100	40	4	0	0	0	0.023873	1	5996	5996		55.503	21.101	1	241940			13443	3580	8876	8958	18296	18296		224			-0.004330292482109144
MPEKEPSVL	9	Oxidation (M)	_M(Oxidation (M))PEKEPSVL_		M(1)PEKEPSVL		M(56)PEKEPSVL	0	0	1		nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF	nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2653198242188	2	523.26535	1044.51615	0.22271	0.00011654	-0.32843	-0.00017185	-0.10572	-5.5317E-05	523.2650884946923	36.814	2.0545	36.814	36.184	38.239	0					171	76	3	0	0	0	0.023873	2	6360	6311;6360		55.503	21.101	1	222530			13444	3580	8876	8958	18297;18298	18298		224			-0.004330292482109144
MPEKEPSVL	9	Oxidation (M)	_M(Oxidation (M))PEKEPSVL_		M(1)PEKEPSVL		M(56)PEKEPSVL	0	0	1		nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF	nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.265380859375	2	523.26535	1044.51615	0.072814	3.8101E-05	-0.10823	-5.663E-05	-0.035411	-1.853E-05	523.2652664405807	35.581	1.0399	35.66	35.322	36.362	0.078831					95	39	4	0	0	0	0.023873	2	5854	5804;5854		55.503	21.101	1	204170			13445	3580	8876	8958	18299;18300	18300		224			-0.004330292482109144
MPEKEPSVL	9	Unmodified	_MPEKEPSVL_					0	0	0		nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF	nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.267822265625	2	515.267893	1028.52123	-0.46026	-0.00023716	0.096114	4.9524E-05	-0.36415	-0.00018763	515.2678428648014	41.41	1.0047	41.41	41.126	42.131	0					69	36	4	0	0	0	0.047066	1	7721	7721		43.982	18.583	1	362590			13446	3580	8876	8959	18301	18301					0.00811274614420654
MPEKEPSVL	9	Unmodified	_MPEKEPSVL_					0	0	0		nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF	nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2677001953125	2	515.267893	1028.52123	-0.31239	-0.00016096	0.12993	6.6949E-05	-0.18246	-9.4016E-05	515.267765655264	41.33	0.76023	41.42	41.108	41.869	0.089764					65	29	3	0	0	0	0.018465	2	7573	7573;7618		59.368	24.967	1	270070			13447	3580	8876	8959	18302;18303	18302					0.00811274614420654
MPELVQHKL	9	Unmodified	_MPELVQHKL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8050537109375	2	547.804977	1093.5954	-0.24575	-0.00013462	0.66824	0.00036607	0.42249	0.00023144	547.8054135833237	40.65	0.62723	40.65	40.31	40.938	0					45	21	3	0	0	0	0.13369	1	7477	7477		40.239	20.982	1	99685			13448	4617	8877	8960	18304	18304					0.05234662496582132
MPELVQHKL	9	Unmodified	_MPELVQHKL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	547.804977	1093.5954	-0.081896	-4.4863E-05	0.5297	0.00029017	0.4478	0.00024531	547.8052520229279	40.52	0.72432	40.61	40.257	40.981	0.089645	-0.01991	-5.8535E-05	NaN	40.239	45	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86456			13449	4617	8877	8960							0.05234662496582132
MPEPKFMY	8	Unmodified	_MPEPKFMY_					0	0	0		ENST00000519858.1_1_8:59513803-59535956:-|nuORF;ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF	ENST00000519858.1_1_8:59513803-59535956:-|nuORF	ENST00000519858.1_1_8:59513803-59535956:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7406616210938	2	521.740457	1041.46636	0.29563	0.00015424	0.016956	8.8465E-06	0.31258	0.00016309	521.7404166658818	55.641	0.63409	55.707	55.432	56.066	0.065128					37	22	2	0	0	0	0.51415	2	11897	11897;11937		10.824	0	1	199630			13450	515	8878	8961	18305;18306	18305					-0.052714354578483835
MPEPTVLSL	9	Oxidation (M)	_M(Oxidation (M))PEPTVLSL_		M(1)PEPTVLSL		M(52)PEPTVLSL	0	0	1		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.7626953125	2	501.762443	1001.51033	0.5119	0.00025685	0.016499	8.2786E-06	0.5284	0.00026513	501.76235208710125	70.142	1.482	70.142	69.379	70.861	0					86	53	2	0	0	0	0.028398	1	16477	16477		52.268	12.311	1	534800			13451	5246	8879	8962	18307	18307		295			0.009638722401291488
MPEPTVLSL	9	Oxidation (M)	_M(Oxidation (M))PEPTVLSL_					0	0	1		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	501.762443	1001.51033	0.43254	0.00021703	0.23442	0.00011763	0.66697	0.00033466	501.7623936757382	70.044	1.3677	70.104	69.497	70.864	0.060562	-0.01876	0.00013528	NaN	52.268	112	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482230			13452	5246	8879	8962				295			0.009638722401291488
MPEPTVLSL	9	Unmodified	_MPEPTVLSL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7650451660156	2	493.764986	985.515419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.753	1	75.753	75.253	76.253	0								0	0	0	0.039919	1	18164	18164		52.268	18.081	1				13453	5246	8879	8963	18308	18308					0.022081761027379798
MPEPTVLSL	9	Unmodified	_MPEPTVLSL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.76470947265625	2	493.764986	985.515419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.722	1	75.766	75.266	76.266	0.044037								0	0	0	0.027871	1	17998	17998		58.679	24.491	1				13454	5246	8879	8963	18309	18309					0.022081761027379798
MPEQIVIHAL	10	Oxidation (M)	_M(Oxidation (M))PEQIVIHAL_		M(1)PEQIVIHAL		M(100)PEQIVIHAL	0	0	1		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2720336914062	2	583.815541	1165.61653	0.70667	0.00041256	-0.22541	-0.0001316	0.48126	0.00028097	583.8154397267442	57.159	0.85679	57.228	56.945	57.802	0.068371					73	32	3	0	0	0	0.001841	1	12342	12342		103.82	74.742	1	280720			13455	1283	8880	8964	18310	18310		76			0.040346278054357754
MPEQIVIHAL	10	Oxidation (M)	_M(Oxidation (M))PEQIVIHAL_					0	0	1		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	583.815541	1165.61653	0.56921	0.00033231	-0.1249	-7.2916E-05	0.44431	0.0002594	583.8155639366414	57.213	0.90731	57.213	56.948	57.855	0	-0.0072023	4.6958E-05	NaN	84.522	75	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379140			13456	1283	8880	8964				76			0.040346278054357754
MPEQWARLL	9	Oxidation (M)	_M(Oxidation (M))PEQWARLL_		M(1)PEQWARLL		M(80)PEQWARLL	0	0	1		ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.3008422851562	2	580.300059	1158.58556	0.57026	0.00033092	-0.15413	-8.9441E-05	0.41613	0.00024148	580.3002951996231	63.25	0.69211	63.25	63.041	63.733	0					54	25	3	0	0	0	0.005983	2	14347	14347;14410		79.596	43.201	1	316750			13457	3394	8881	8965	18311;18312	18311		217			0.012614744912070819
MPEQWARLL	9	Oxidation (M)	_M(Oxidation (M))PEQWARLL_		M(1)PEQWARLL		M(53)PEQWARLL	0	0	1		ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3001098632812	2	580.300059	1158.58556	0.5782	0.00033553	-0.077344	-4.4883E-05	0.50086	0.00029065	580.3000051817303	63.161	0.71858	63.234	63.015	63.734	0.072701					59	29	3	0	0	0	0.026809	2	14221	14176;14221		53.404	25.775	1	290680			13458	3394	8881	8965	18313;18314	18314		217			0.012614744912070819
MPEQWARLL	9	Unmodified	_MPEQWARLL_					0	0	0		ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.30224609375	2	572.302601	1142.59065	0.40465	0.00023158	-0.54835	-0.00031382	-0.1437	-8.2238E-05	572.3023457642722	68.573	0.42574	68.573	68.324	68.749	0					34	14	3	0	0	0	0.038996	1	15966	15966		45.74	14.472	1	205060			13459	3394	8881	8966	18315	18315					0.02505778353815913
MPEQWARLL	9	Unmodified	_MPEQWARLL_					0	0	0		ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.302601	1142.59065	0.36311	0.00020781	-0.69725	-0.00039904	-0.33414	-0.00019123	572.302192472547	68.448	0.52087	68.511	68.247	68.768	0.063507	-0.030788	-8.7769E-05	NaN	45.74	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176900			13460	3394	8881	8966							0.02505778353815913
MPESEEIAQLL	11	Unmodified	_MPESEEIAQLL_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000579853.5_1_17:46048512-46051060:+|nuORF;ENST00000581708.5_1_17:46048512-46051791:+|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000584525.5_1_17:46048512-46051498:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.3135375976562	2	630.313029	1258.6115	0.67342	0.00042446	-0.67248	-0.00042387	0.00093618	5.9009E-07	630.3126332549118	80.53	0.55963	80.53	80.313	80.873	0					36	19	4	0	0	0	0.3051	2	19639	19613;19639		17.443	7.3687	1	178410			13461	1590	8882	8967	18316;18317	18317					-0.00745720847839948
MPETTETVL	9	Oxidation (M)	_M(Oxidation (M))PETTETVL_		M(1)PETTETVL		M(44)PETTETVL	0	0	1		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7471923828125	2	518.74699	1035.47943	0.22369	0.00011604	0.36715	0.00019046	0.59084	0.0003065	518.7469895408211	49.456	3.8225	49.456	48.483	52.305	0					202	133	2	0	0	0	0.047633	1	10176	10176		43.858	11.553	1	1790600			13462	5618	8883	8968	18318	18318		318			-0.03689325864775128
MPETTETVL	9	Oxidation (M)	_M(Oxidation (M))PETTETVL_		M(1)PETTETVL		M(44)PETTETVL	0	0	1		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7470703125	2	518.74699	1035.47943	0.49453	0.00025653	0.020489	1.0629E-05	0.51501	0.00026716	518.746921907488	47.827	1.1498	47.907	47.322	48.472	0.080029					123	43	4	0	0	0	0.047633	1	9406	9406		43.858	11.553	1	1258600			13463	5618	8883	8968	18319	18319		318			-0.03689325864775128
MPETTETVL	9	Unmodified	_MPETTETVL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7496337890625	2	510.749533	1019.48451	0.42273	0.00021591	-0.091394	-4.6679E-05	0.33134	0.00016923	510.749405284309	55.724	0.73617	55.724	55.38	56.116	0					81	25	4	0	0	0	0.031665	4	12054	12005;12054;12098;12142		49.933	24.534	1	1639100			13464	5618	8883	8969	18320;18321;18322;18323	18321					-0.02445022002166297
MPETTETVL	9	Unmodified	_MPETTETVL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.74957275390625	2	510.749533	1019.48451	0.34395	0.00017567	-0.056449	-2.8831E-05	0.2875	0.00014684	510.7494433095598	55.692	0.71066	55.757	55.432	56.142	0.065128					75	25	4	0	0	0	0.028398	2	11943	11900;11943		52.268	23.782	1	1362800			13465	5618	8883	8969	18324;18325	18325					-0.02445022002166297
MPETYQARL	9	Unmodified	_MPETYQARL_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7757568359375	2	554.776416	1107.53828	0.036595	2.0302E-05	-0.45165	-0.00025057	-0.41506	-0.00023026	554.7761602322925	43.59	0.58625	43.59	43.358	43.945	0					47	21	3	0	0	0	0.10543	1	8418	8418		31.268	21.194	1	192190			13466	1441	8884	8970	18326	18326					-0.011188047797986655
MPETYQARL	9	Unmodified	_MPETYQARL_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.32275390625	2	554.776416	1107.53828	0.2177	0.00012077	-0.35848	-0.00019888	-0.14079	-7.8104E-05	554.7761094589212	43.517	0.45227	43.606	43.394	43.846	0.088924					36	16	3	0	0	0	0.08788	1	8235	8235		49.554	37.023	1	147800			13467	1441	8884	8970	18327	18327					-0.011188047797986655
MPEVKVETI	9	Unmodified	_MPEVKVETI_					0	0	0			REV__nc|ENSG00000149636|Q9H410-2|DSN1	REV__nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7974853515625	2	523.283543	1044.55253	0.15554	8.1394E-05	0.060256	3.1531E-05	0.2158	0.00011292	523.283494775483	51.649	0.55095	51.649	51.386	51.937	0					36	18	3	0	0	0	0.24366	1	10857	10857		13.042	0	1	481750	+		13468	9620	8885	8971	18328	18328					0.032038476485013234
MPEVSVLVL	9	Unmodified	_MPEVSVLVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7832946777344	2	493.783179	985.551804	0.66469	0.00032821	-0.35846	-0.000177	0.30622	0.00015121	493.7829752777237	85.59	0.40187	85.615	85.418	85.82	0.025177					24	15	2	0	0	0	0.22344	1	20999	20999		15.847	2.3393	1	202290			13469	550	8886	8972	18329	18329					0.05845052999438849
MPEVSVLVL	9	Unmodified	_MPEVSVLVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.783179	985.551804	0.56155	0.00027728	-0.043002	-2.1234E-05	0.51855	0.00025605	493.78306476750765	85.572	0.32335	85.572	85.482	85.806	0	-0.021292	0.00022446	NaN	15.847	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384420			13470	550	8886	8972							0.05845052999438849
MPEYLYFVD	9	Unmodified	_MPEYLYFVD_					0	0	0			REV__ENSG00000147119|ENST00000276055|CHST7	REV__ENSG00000147119|ENST00000276055|CHST7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.765380859375	2	588.767726	1175.5209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.054	1	21.054	20.554	21.554	0								0	0	0	0.29233	1	1758	1758		0.6015	0	1		+		13471	9559	8887	8973	18330	18330					-0.05984145105458083
MPFDDHLL	8	Unmodified	_MPFDDHLL_					0	0	0			REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2337341308594	2	494.233853	986.453153	0.33131	0.00016375	0.0047606	2.3528E-06	0.33607	0.0001661	494.233775730344	71.755	1.5241	71.755	71.329	72.853	0					128	53	4	0	0	0	0.46036	1	17211	17211		18.135	5.6034	1	2220600	+		13472	11799	8888	8974	18331	18331					-0.04061550245603485
MPFDDHLL	8	Unmodified	_MPFDDHLL_					0	0	0			REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2337646484375	2	494.233853	986.453153	0.30366	0.00015008	0.061672	3.0481E-05	0.36533	0.00018056	494.2338134821519	71.587	1.4363	71.645	71.288	72.724	0.058578					113	50	3	0	0	0	0.46036	1	16970	16970		18.135	5.6034	1	2690500	+		13473	11799	8888	8974	18332	18332					-0.04061550245603485
MPFRGYAVL	9	Oxidation (M)	_M(Oxidation (M))PFRGYAVL_		M(1)PFRGYAVL		M(46)PFRGYAVL	0	0	1		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.2783813476562	2	535.278595	1068.54264	0.5853	0.0003133	1.3139	0.00070332	1.8992	0.0010166	535.2794617465634	55.063	1.8708	55.063	54.587	56.458	0					148	69	3	0	0	0	0.037705	1	11854	11854		46.021	11.089	1	603660			13474	4351	8889	8975	18333	18333		262			0.011107044337904881
MPFYFFLL	8	Unmodified	_MPFYFFLL_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|255|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|255|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|255|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2781372070312	2	539.277532	1076.54051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.01	1	104.05	103.55	104.55	0.03791								0	0	0	0.38822	1	26581	26581		6.3541	0.14832	1				13475	7407	8890	8976	18334	18334					0.0053027569597361435
MPGLRDPLL	9	Unmodified	_MPGLRDPLL_					0	0	0		ENST00000178638.7_1_15:63618224-63618410:-|nuORF	ENST00000178638.7_1_15:63618224-63618410:-|nuORF	ENST00000178638.7_1_15:63618224-63618410:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2866516113281	2	506.28642	1010.55829	0.31381	0.00015888	-0.45726	-0.00023151	-0.14346	-7.263E-05	506.28602122198095	62.685	0.43025	62.758	62.503	62.934	0.072697					19	14	2	0	0	0	0.2359	1	14025	14025		14.405	5.0579	1	80009			13476	5781	8891	8977	18335	18335					0.05342990950816784
MPGRVEPIL	9	Unmodified	_MPGRVEPIL_					0	0	0		ENSG00000142686|ENST00000270815|C1orf216	ENSG00000142686|ENST00000270815|C1orf216	ENSG00000142686|ENST00000270815|C1orf216	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2862548828125	2	506.28642	1010.55829	0.31381	0.00015888	-0.45726	-0.00023151	-0.14346	-7.263E-05	506.28602122198095	62.685	0.43025	62.758	62.503	62.934	0.072697					19	14	2	0	0	0	0.28919	1	14052	14052		8.1555	0	1	80009			13477	3118	8892	8978	18336	18336					0.05342990950816784
MPHDLITQL	9	Oxidation (M)	_M(Oxidation (M))PHDLITQL_		M(1)PHDLITQL		M(64)PHDLITQL	0	0	1		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2786254882812	2	542.278792	1082.54303	0.63911	0.00034658	-0.30718	-0.00016658	0.33193	0.00018	542.2785468534255	54.348	1.3287	54.348	53.711	55.04	0					110	53	3	0	0	0	0.012041	2	11642	11592;11642		63.961	32.692	1	431120			13478	2477	8893	8979	18337;18338	18338		157			0.005060793629809268
MPHDLITQL	9	Oxidation (M)	_M(Oxidation (M))PHDLITQL_		M(1)PHDLITQL		M(44)PHDLITQL	0	0	1		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2774658203125	2	542.278792	1082.54303	0.64131	0.00034777	-0.44389	-0.00024071	0.19742	0.00010706	542.2785940883635	54.278	1.1379	54.343	53.894	55.032	0.065128					81	51	3	0	0	0	0.047633	1	11441	11441		43.858	18.867	1	363490			13479	2477	8893	8979	18339	18339		157			0.005060793629809268
MPHDLITQL	9	Unmodified	_MPHDLITQL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2811279296875	2	534.281334	1066.54812	0.18663	9.9714E-05	-0.48809	-0.00026078	-0.30146	-0.00016106	534.2812443118979	59.347	0.70098	59.347	58.979	59.68	0					72	26	4	0	0	0	0.083124	1	13133	13133		36.127	7.6402	1	621990			13480	2477	8893	8980	18340	18340					0.017503832255897578
MPHDLITQL	9	Unmodified	_MPHDLITQL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2813110351562	2	534.281334	1066.54812	0.4008	0.00021414	-0.81689	-0.00043645	-0.41609	-0.00022231	534.280873331051	59.253	1.258	59.325	58.417	59.675	0.072338					87	46	3	0	0	0	0.083124	1	13004	13004		36.127	9.7857	1	561900			13481	2477	8893	8980	18341	18341					0.017503832255897578
MPHVQDPSL	9	Unmodified	_MPHVQDPSL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2498779296875	2	512.250034	1022.48552	-0.2008	-0.00010286	-0.14922	-7.6439E-05	-0.35002	-0.0001793	512.249957916671	45.229	0.76318	45.229	44.884	45.647	0					59	26	3	0	0	0	0.017478	1	8872	8872		60.074	20.117	1	208550			13482	3127	8894	8981	18342	18342					-0.02482762842601005
MPHVQDPSL	9	Unmodified	_MPHVQDPSL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2500610351562	2	512.250034	1022.48552	0.052213	2.6746E-05	-0.087412	-4.4777E-05	-0.035199	-1.8031E-05	512.2499778972634	45.147	0.54001	45.234	45.011	45.551	0.087543					42	20	3	0	0	0	0.023873	2	8702	8702;8752		55.503	29.161	1	173260			13483	3127	8894	8981	18343;18344	18343					-0.02482762842601005
MPISSHVDL	9	Oxidation (M)	_M(Oxidation (M))PISSHVDL_		M(1)PISSHVDL		M(68)PISSHVDL	0	0	1		nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1	nc|ENSG00000171763|Q9BVQ7-2|AFG2B	nc|ENSG00000171763|Q9BVQ7-2|AFG2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7496643066406	2	507.749867	1013.48518	-0.53298	-0.00027062	-0.21545	-0.0001094	-0.74844	-0.00038002	507.7498373257699	42.298	0.43893	42.298	42.106	42.545	0					32	14	3	0	0	0	0.0097093	1	7971	7971		68.081	28.123	1	94003			13484	4458	8895	8982	18345	18345		267			-0.021021825624416124
MPISSHVDL	9	Unmodified	_MPISSHVDL_					0	0	0		nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1	nc|ENSG00000171763|Q9BVQ7-2|AFG2B	nc|ENSG00000171763|Q9BVQ7-2|AFG2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.75250244140625	2	499.75241	997.490267	0.22029	0.00011009	-3.0591	-0.0015288	-2.8388	-0.0014187	499.7524139272991	49.708	0.43404	49.708	49.562	49.996	0					32	14	4	0	0	0	0.10833	1	10249	10249		30.637	5.2372	1	138320			13485	4458	8895	8983	18346	18346					-0.008578786998327814
MPIVLELIP	9	Unmodified	_MPIVLELIP_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2;ENST00000427426.1_1_1:568752-568815:+|nuORF	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8096313476562	2	512.809196	1023.60384	0.51513	0.00026416	0.15092	7.7391E-05	0.66604	0.00034155	512.8092015593478	99.842	0.64256	99.884	99.696	100.34	0.042839					89	39	4	0	0	0	0.22344	1	25350	25350		15.847	8.558	1	813580			13486	5390	8896	8984	18347	18347					0.09298216413208138
MPIVYDPVI	9	Unmodified	_MPIVYDPVI_					0	0	0		tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.8104248046875	2	523.783179	1045.5518	0.54848	0.00028728	-3.6624	-0.0019183	-3.1139	-0.001631	523.781447227655	97.516	0.22304	97.516	97.461	97.684	0					14	9	2	0	0	0	0.25051	1	24783	24783		7.9102	7.4518	1	60063			13487	13565	8897	8985	18348	18348					0.030850529994495446
MPLLRQEEL	9	Oxidation (M)	_M(Oxidation (M))PLLRQEEL_		M(1)PLLRQEEL		M(44)PLLRQEEL	0	0	1		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8053588867188	2	572.805174	1143.59579	0.031388	1.7979E-05	-0.057402	-3.288E-05	-0.026014	-1.4901E-05	572.8050764067317	46.367	0.4906	46.367	45.981	46.472	0					41	16	3	0	0	0	0.048027	1	9195	9195		43.772	19.099	1	130670			13488	487	8898	8986	18349	18349		23			0.029740374257926305
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.8080444335938	2	564.807716	1127.60088	0.58019	0.00032769	0.14089	7.9574E-05	0.72108	0.00040727	564.807831776325	54.479	0.59761	54.479	54.296	54.894	0					48	27	2	0	0	0	0.0081278	3	11667	11667;11727;11749		72.968	33.018	1	433280			13489	487	8898	8987	18350;18351;18352	18350					0.042183412884014615
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.8088989257812	2	564.807716	1127.60088	0.57444	0.00032445	0.42387	0.00023941	0.99831	0.00056385	564.8078981764885	54.469	0.48915	54.534	54.314	54.803	0.065128					42	25	2	0	0	0	0.0045417	2	11525	11525;11568		89.401	56.615	1	400620			13490	487	8898	8987	18353;18354	18353					0.042183412884014615
MPLNVADLI	9	Oxidation (M)	_M(Oxidation (M))PLNVADLI_		M(1)PLNVADLI		M(72)PLNVADLI	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2712097167969	2	501.270435	1000.52632	0.80724	0.00040465	0.4404	0.00022076	1.2476	0.00062541	501.2707569086091	81.099	0.90711	81.099	80.873	81.78	0					71	30	4	0	0	0	0.0084662	1	19808	19808		71.922	37.521	1	1480100			13491	3805	8899	8988	18355	18355		236			0.026075784770227983
MPLNVADLI	9	Oxidation (M)	_M(Oxidation (M))PLNVADLI_		M(1)PLNVADLI		M(89)PLNVADLI	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.270751953125	2	501.270435	1000.52632	0.55887	0.00028014	0.20251	0.00010151	0.76138	0.00038166	501.2704098410723	82.322	2.3201	82.322	81.489	83.809	0					180	80	4	0	0	0	0.0045534	4	20171	20130;20171;20215;20259		88.954	45.096	1	2283500			13492	3805	8899	8988	18356;18357;18358;18359	18357		236			0.026075784770227983
MPLNVADLI	9	Oxidation (M)	_M(Oxidation (M))PLNVADLI_		M(1)PLNVADLI		M(79)PLNVADLI	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2707214355469	2	501.270435	1000.52632	0.31898	0.0001599	0.41427	0.00020766	0.73325	0.00036756	501.27056258732625	82.29	2.3029	82.312	81.707	84.01	0.021744					205	81	4	0	0	0	0.006264	4	20005	19960;20005;20046;20089		78.728	29.148	1	2390300			13493	3805	8899	8988	18360;18361;18362;18363	18361		236			0.026075784770227983
MPLNVADLI	9	Oxidation (M)	_M(Oxidation (M))PLNVADLI_		M(1)PLNVADLI		M(46)PLNVADLI	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2907409667969	2	501.270435	1000.52632	0.56148	0.00028146	0.77138	0.00038667	1.3329	0.00066812	501.2709771835176	81.071	0.82741	81.095	80.882	81.709	0.023605					96	29	5	0	0	0	0.04667	1	19654	19654		45.7	25.246	1	1956700			13494	3805	8899	8988	18364	18364		236			0.026075784770227983
MPLNVADLI	9	Unmodified	_MPLNVADLI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2730407714844	2	493.272978	984.531403	0.59058	0.00029132	-0.65764	-0.0003244	-0.067061	-3.3079E-05	493.27276444682616	88.098	1.2357	88.098	87.795	89.03	0					120	47	5	0	0	0	0.0002706	1	21931	21931		111.29	18.465	1	4345500			13495	3805	8899	8989	18365	18365					0.03851882339631629
MPLNVADLI	9	Unmodified	_MPLNVADLI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2730407714844	2	493.272978	984.531403	0.37565	0.0001853	-0.30092	-0.00014844	0.074726	3.686E-05	493.27288538032684	88.115	1.212	88.145	87.795	89.007	0.030037					123	47	5	0	0	0	0.0002706	1	21748	21748		111.29	29.674	1	4142500			13496	3805	8899	8989	18366	18366					0.03851882339631629
MPLSEDFVWM	10	Oxidation (M)	_MPLSEDFVWM(Oxidation (M))_		MPLSEDFVWM(1)		M(-52)PLSEDFVWM(52)	0	0	1		ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENSG00000092036|ENST00000541587|HAUS4	ENST00000554651.5_1_14:23417204-23426210:-|nuORF	ENST00000554651.5_1_14:23417204-23426210:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.7774658203125	2	635.777767	1269.54098	0.66996	0.00042595	-0.72079	-0.00045826	-0.050833	-3.2318E-05	635.7774890996142	84.591	0.766	84.591	84.423	85.189	0					62	36	2	0	0	0	0.06954	3	20906	20817;20858;20906		52.268	39.737	2	455380			13497	1071	8900	8990	18367;18368;18369	18369		60			-0.08300717437168714
MPLSEDFVWM	10	Oxidation (M)	_MPLSEDFVWM(Oxidation (M))_		MPLSEDFVWM(1)		M(-42)PLSEDFVWM(42)	0	0	1		ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENSG00000092036|ENST00000541587|HAUS4	ENST00000554651.5_1_14:23417204-23426210:-|nuORF	ENST00000554651.5_1_14:23417204-23426210:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.7778930664062	2	635.777767	1269.54098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.431	1	84.454	83.954	84.954	0.023125								0	0	0	0.126	1	20651	20651		41.84	31.016	2				13498	1071	8900	8990	18370	18370		60			-0.08300717437168714
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.71)PM(0.29)NVADLI		M(3.9)PM(-3.9)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.248779296875	2	510.248646	1018.48274	0.079914	4.0776E-05	-0.79755	-0.00040695	-0.71764	-0.00036617	510.2482112647207	73.614	0.74017	73.614	73.313	74.053	0					41	26	2	0	0	0	0.03472	1	17546	17546		47.749	14.963	2	505270			13499	3066;7534	8901	8991	18371	18371		199;200			-0.02576354291750249
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.5)PM(0.5)NVADLI		M(0)PM(0)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2486877441406	2	510.248646	1018.48274	0.38438	0.00019613	-0.48647	-0.00024822	-0.10208	-5.2088E-05	510.2484169542375	75.621	0.87531	75.621	75.148	76.024	0					89	47	4	0	0	0	0.03472	1	18112	18112		47.749	18.667	2	1094000			13500	3066;7534	8901	8991	18372	18372		199;200			-0.02576354291750249
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.5)PM(0.5)NVADLI		M(0)PM(0)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.24884033203125	2	510.248646	1018.48274	0.3589	0.00018313	-0.37132	-0.00018947	-0.012416	-6.3353E-06	510.24850274715635	75.533	0.74998	75.577	75.142	75.892	0.044037					74	34	4	0	0	0	0.047633	2	17950	17950;17993		43.858	14.777	2	1021900			13501	3066;7534	8901	8991	18373;18374	18373		199;200			-0.02576354291750249
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.5)PM(0.5)NVADLI		M(0)PM(0)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2489929199219	2	510.248646	1018.48274	0.42608	0.00021741	-0.16669	-8.5052E-05	0.25939	0.00013235	510.24848623063093	77.532	1.251	77.566	77.342	78.593	0.034477					91	44	3	0	0	0	0.0569	1	18518	18518		41.84	19.103	2	582590			13502	3066;7534	8901	8991	18375	18375		199;200			-0.02576354291750249
MPMNVADLI	9	Unmodified	_MPMNVADLI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2516174316406	2	502.251188	1002.48782	0.51405	0.00025818	-0.43496	-0.00021846	0.07909	3.9723E-05	502.2510397226317	83.577	0.65025	83.577	83.312	83.962	0					43	21	3	0	0	0	0.083124	1	20525	20525		36.127	7.0454	1	292140			13503	3066;7534	8901	8992	18376	18376					-0.013320504291414181
MPMNVADLI	9	Unmodified	_MPMNVADLI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2513122558594	2	502.251188	1002.48782	0.25494	0.00012804	-0.95365	-0.00047897	-0.69872	-0.00035093	502.2511740768579	83.565	0.47711	83.587	83.361	83.838	0.021744					35	16	3	0	0	0	0.11547	1	20361	20361		29.082	6.3453	1	252290			13504	3066;7534	8901	8992	18377	18377					-0.013320504291414181
MPNKQPESSL	10	Unmodified	_MPNKQPESSL_					0	0	0		ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7777709960938	2	565.779156	1129.54376	-0.17259	-9.7647E-05	-0.057034	-3.2269E-05	-0.22962	-0.00012992	565.7788065470965	31.471	0.46991	31.471	31.283	31.753	0					39	20	3	0	0	0	0.45945	1	4764	4764		2.9952	0.93549	1	37381			13505	4390	8902	8993	18378	18378					-0.015831259879860227
MPNSPAPHF	9	Unmodified	_MPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7536315917969	2	499.231645	996.448736	0.038434	1.9188E-05	0.32276	0.00016113	0.3612	0.00018032	499.2316116744101	43.873	0.33816	43.962	43.793	44.132	0.088924					19	11	2	0	0	0	0.25281	1	8339	8339		6.7232	1.4925	1	66192			13506	1753	8903	8994	18379	18379					-0.04963014668510368
MPPSISVFQA	10	Unmodified	_MPPSISVFQA_					0	0	0		ADORA1|p.A7V|1|0.19|ENSG00000163485|chr1:203128861-203128861|C/T|missense_variant	ADORA1|p.A7V|1|0.19|ENSG00000163485|chr1:203128861-203128861|C/T|missense_variant	ADORA1|p.A7V|1|0.19|ENSG00000163485|chr1:203128861-203128861|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7761840820312	2	538.775885	1075.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.13	1	104.17	103.67	104.67	0.03791								0	0	0	0.33784	1	26616	26616		2.7352	0.43246	1				13507	16	8904	8995	18380	18380					0.0024698085132968117
MPPWENIWL	9	Unmodified	_MPPWENIWL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2916870117188	2	593.291702	1184.56885	0.45177	0.00026803	0.37908	0.00022491	0.83085	0.00049294	593.2918404560431	96.89	1.0157	96.89	96.423	97.438	0					114	47	3	0	0	0	0.098463	2	24602	24602;24640		32.786	14.413	1	436110			13508	4583	8905	8996	18381;18382	18381					-0.01605026394736342
MPPWENIWL	9	Unmodified	_MPPWENIWL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2918090820312	2	593.291702	1184.56885	0.44976	0.00026684	-0.023452	-1.3914E-05	0.42631	0.00025293	593.2917084645843	96.792	1.0045	96.832	96.483	97.488	0.039772					94	49	3	0	0	0	0.13341	3	24476	24383;24428;24476		26.268	13.737	1	398420			13509	4583	8905	8996	18383;18384;18385	18385					-0.01605026394736342
MPPWENIWL	9	Oxidation (M)	_M(Oxidation (M))PPWENIWL_		M(1)PPWENIWL		M(52)PPWENIWL	0	0	1		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2890014648438	2	601.289159	1200.56377	0.64436	0.00038745	-0.15505	-9.323E-05	0.48931	0.00029421	601.2890413456566	92.592	1.3697	92.629	92.19	93.559	0.03653					140	53	4	0	0	0	0.029291	1	23127	23127		51.63	35.783	1	854440			13510	4583	8905	8997	18386	18386		270			-0.028493302573679102
MPQAMSFVM	9	Oxidation (M)	_MPQAMSFVM(Oxidation (M))_		MPQAMSFVM(1)		M(-48)PQAM(-48)SFVM(48)	0	0	1			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2299194335938	2	529.229399	1056.44424	0.18466	9.7729E-05	0.79583	0.00042118	0.98049	0.0005189	529.2296805032969	46.616	1.2436	46.616	46.156	47.4	0					107	56	3	0	0	0	0.033885	1	9282	9282		48.346	18.121	3	1479100	+		13511	9223	8906	8998	18387	18387		340			-0.0817198319793988
MPQAMSFVM	9	Oxidation (M)	_MPQAMSFVM(Oxidation (M))_		MPQAMSFVM(1)		M(-57)PQAM(-57)SFVM(57)	0	0	1			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.298095703125	2	529.229399	1056.44424	0.18466	9.7729E-05	0.79583	0.00042118	0.98049	0.0005189	529.2296805032969	46.616	1.2436	46.616	46.156	47.4	0					107	56	3	0	0	0	0.054458	1	9299	9299		57.471	19.32	3	1479100	+		13512	9223	8906	8998	18388	18388		340			-0.0817198319793988
MPQKERESI	9	Unmodified	_MPQKERESI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2869873046875	2	559.287148	1116.55974	-0.16917	-9.4614E-05	-0.17298	-9.6747E-05	-0.34215	-0.00019136	559.2870058319796	22.529	0.56272	22.529	22.337	22.9	0					90	45	3	0	0	0	0.29718	2	2189	2155;2189		7.1017	5.042	1	56989			13513	3066	8907	8999	18389;18390	18390					0.0061258024893504626
MPQKERESI	9	Unmodified	_MPQKERESI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2871704101562	2	559.287148	1116.55974	0.19936	0.0001115	-0.30025	-0.00016792	-0.10089	-5.6424E-05	559.286907699346	22.377	0.4577	22.479	22.275	22.733	0.10178					99	40	3	0	0	0	0.15482	3	2016	1980;2016;2048		23.79	15.044	1	65891			13514	3066	8907	8999	18391;18392;18393	18392					0.0061258024893504626
MPQPDFSFL	9	Unmodified	_MPQPDFSFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2547607421875	2	541.254785	1080.49502	0.40415	0.00021875	0.33221	0.00017981	0.73636	0.00039856	541.254511819553	85.804	0.51869	85.804	85.631	86.15	0					39	21	3	0	0	0	0.10543	2	21230	21230;21279		31.268	2.206	1	128160			13515	1829	8908	9000	18394;18395	18394					-0.042009945570725904
MPQPDFSFL	9	Unmodified	_MPQPDFSFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2540893554688	2	541.254785	1080.49502	0.62239	0.00033687	0.0526	2.847E-05	0.67499	0.00036534	541.2544781664421	85.801	0.40901	85.826	85.599	86.008	0.025169					35	14	3	0	0	0	0.14444	1	21055	21055		24.991	9.1438	1	163880			13516	1829	8908	9000	18396	18396					-0.042009945570725904
MPRHIMPN	8	Unmodified	_MPRHIMPN_					0	0	0			REV__nc|ENSG00000132466|O75179-4|ANKRD17	REV__nc|ENSG00000132466|O75179-4|ANKRD17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.2496643066406	2	498.249314	994.484076	-0.2572	-0.00012815	-0.28348	-0.00014124	-0.54069	-0.0002694	498.2490535240536	19.306	0.30534	19.306	19.163	19.469	0					58	33	2	0	0	0	0.54081	1	1355	1355		0.79363	0	1	21229	+		13517	9117	8909	9001	18397	18397					-0.013386754123530409
MPRLLEPPVLT	11	Unmodified	_MPRLLEPPVLT_					0	0	0		nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-1|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-25|TAF1	nc|ENSG00000147133|P21675-23|TAF1	nc|ENSG00000147133|P21675-23|TAF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3692626953125	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.944	1	93.944	93.444	94.444	0								0	0	0	0.33466	1	23703	23703		2.9952	1.3426	1				13518	3317	8910	9002	18398	18398					0.09955749282016768
MPSASMTRL	9	Unmodified	_MPSASMTRL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000103034|Q9ULP0-2|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2451171875	2	497.246437	992.478322	-0.02305	-1.1461E-05	-1.3469	-0.00066976	-1.37	-0.00068122	497.24582087594933	43.774	0.41027	43.774	43.595	44.006	0					28	14	3	0	0	0	0.071704	1	8421	8421		38.615	14.594	1	98088			13519	1413;7473	8911	9003	18399	18399					-0.018218187146771925
MPSASMTRL	9	Unmodified	_MPSASMTRL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000103034|Q9ULP0-2|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2460632324219	2	497.246437	992.478322	0.068354	3.3989E-05	-1.398	-0.00069513	-1.3296	-0.00066114	497.2459253114844	43.718	0.44793	43.807	43.581	44.029	0.088924					29	16	3	0	0	0	0.12515	1	8276	8276		27.223	4.487	1	98643			13520	1413;7473	8911	9003	18400	18400					-0.018218187146771925
MPSILADVF	9	Unmodified	_MPSILADVF_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.75982666015625	2	496.759704	991.504854	0.62913	0.00031253	-0.20926	-0.00010395	0.41987	0.00020858	496.7594771738457	92.143	0.50457	92.143	91.927	92.431	0					43	18	3	0	0	0	0.083124	2	23200	23155;23200		36.127	20.28	1	195220			13521	2302	8912	9004	18401;18402	18402					0.008761934483004552
MPSILADVF	9	Unmodified	_MPSILADVF_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7596740722656	2	496.759704	991.504854	0.52452	0.00026056	-0.0535	-2.6577E-05	0.47102	0.00023399	496.7595561508621	92.145	0.51292	92.182	91.939	92.452	0.03653					34	17	3	0	0	0	0.10833	1	23001	23001		30.637	14.789	1	218100			13522	2302	8912	9004	18403	18403					0.008761934483004552
MPSLENLDL	9	Unmodified	_MPSLENLDL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2578125	2	516.257525	1030.5005	0.6135	0.00031672	-0.42162	-0.00021767	0.19188	9.9059E-05	516.2572737678906	79.569	0.49672	79.569	79.372	79.869	0					27	17	2	0	0	0	0.14444	1	19336	19336		24.991	3.2443	1	170400			13523	5758	8913	9005	18404	18404					-0.013533157652773298
MPSLENLDL	9	Unmodified	_MPSLENLDL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	516.257525	1030.5005	0.3194	0.00016489	-0.71515	-0.0003692	-0.39576	-0.00020431	516.2570745383194	79.544	0.33198	79.57	79.437	79.769	0.026436	0.0004277	-0.00022726	NaN	24.991	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155670			13524	5758	8913	9005							-0.013533157652773298
MPSNLWVNQ	9	Unmodified	_MPSNLWVNQ_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.30419921875	2	544.763309	1087.51206	0.26483	0.00014427	-0.37452	-0.00020402	-0.10969	-5.9753E-05	544.7629326112182	37.068	0.63634	37.068	36.806	37.442	0					39	24	2	0	0	0	0.259	1	6500	6500		1.6526	0	1	46294	+		13525	10353	8914	9006	18405	18405					-0.028190739512638174
MPSNLWVNQ	9	Unmodified	_MPSNLWVNQ_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	544.763309	1087.51206	0.28502	0.00015527	-0.30397	-0.00016559	-0.018956	-1.0326E-05	544.7630856281546	37.008	0.60612	37.09	36.765	37.371	0.081715	0.010748	4.037E-05	NaN	3.2813	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45609	+		13526	10353	8914	9006							-0.028190739512638174
MPSQFRDIL	9	Unmodified	_MPSQFRDIL_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7870483398438	2	553.786784	1105.55902	0.58681	0.00032497	-0.88711	-0.00049127	-0.3003	-0.0001663	553.7862528286271	60.546	0.4978	60.546	60.363	60.861	0					27	17	2	0	0	0	0.17382	1	13538	13538		21.59	1.1756	1	174620			13527	1195	8915	9007	18406	18406					0.010457855998993182
MPSQFRDIL	9	Unmodified	_MPSQFRDIL_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7867431640625	2	553.786784	1105.55902	0.41972	0.00023243	-0.98253	-0.00054411	-0.56281	-0.00031168	553.7862979418278	60.435	0.28994	60.509	60.367	60.657	0.073421					13	9	2	0	0	0	0.20162	1	13361	13361		18.373	1.2602	1	125070			13528	1195	8915	9007	18407	18407					0.010457855998993182
MPSQLDNLVL	10	Unmodified	_MPSQLDNLVL_					0	0	0		ENSG00000160094|ENST00000539719|ZNF362	ENSG00000160094|ENST00000539719|ZNF362	ENSG00000160094|ENST00000539719|ZNF362	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3181762695312	2	565.299724	1128.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.397	1	97.438	96.938	97.938	0.040855								0	0	0	0.33711	1	24601	24601		3.5965	1.2938	1				13529	3747	8916	9008	18408	18408					0.025746350514964433
MPSRPELSA	9	Unmodified	_MPSRPELSA_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2499694824219	2	494.250034	986.485516	0.45725	0.00022599	-0.60129	-0.00029719	-0.14404	-7.1192E-05	494.24981517439585	38.187	0.69669	38.187	37.929	38.625	0					53	23	4	0	0	0	0.046553	1	6734	6734		65.474	28.967	1	356750			13530	1931	8917	9009	18409	18409					-0.008267628425869589
MPSRPELSA	9	Unmodified	_MPSRPELSA_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.25006103515625	2	494.250034	986.485516	0.43424	0.00021462	-0.33937	-0.00016773	0.094868	4.6889E-05	494.24992423935726	38.082	0.74781	38.166	37.901	38.649	0.084476					58	27	4	0	0	0	0.047066	2	6578	6578;6624		43.982	18.991	1	300690			13531	1931	8917	9009	18410;18411	18410					-0.008267628425869589
MPSTRDYEI	9	Unmodified	_MPSTRDYEI_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2583618164062	2	556.258056	1110.50156	0.28957	0.00016108	-0.13652	-7.5942E-05	0.15305	8.5136E-05	556.2579170543945	44.805	0.52514	44.893	44.76	45.285	0.08754					33	19	2	0	0	0	0.2359	1	8629	8629		14.405	6.7964	1	103540			13532	7557	8918	9010	18412	18412					-0.0492710139637893
MPSTRDYEI	9	Unmodified	_MPSTRDYEI_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	556.258056	1110.50156	-0.032168	-1.7893E-05	-0.39144	-0.00021774	-0.42361	-0.00023564	556.257835116166	44.894	0.43654	44.894	44.689	45.126	0	0.00055425	-0.00013318	NaN	14.405	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122170			13533	7557	8918	9010							-0.0492710139637893
MPSVPDFETL	10	Oxidation (M)	_M(Oxidation (M))PSVPDFETL_		M(1)PSVPDFETL		M(65)PSVPDFETL	0	0	1		nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF	nc|ENSG00000141030|Q9UNS2-2|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.268798828125	2	576.26809	1150.52163	-0.002787	-1.6061E-06	0.81259	0.00046827	0.8098	0.00046666	576.268577286604	72.659	0.53471	72.659	72.468	73.002	0					35	18	2	0	0	0	0.023231	2	17194	17194;17242		65.235	44.781	1	387060			13534	3041	8919	9011	18413;18414	18413		197			-0.0476135045639694
MPSVPDFETL	10	Oxidation (M)	_M(Oxidation (M))PSVPDFETL_		M(1)PSVPDFETL		M(65)PSVPDFETL	0	0	1		nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF	nc|ENSG00000141030|Q9UNS2-2|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2686157226562	2	576.26809	1150.52163	0.15603	8.9913E-05	0.38526	0.00022201	0.54129	0.00031193	576.2682529197308	72.642	1.0319	72.698	71.98	73.012	0.055939					62	35	3	0	0	0	0.023231	2	17059	17001;17059		65.235	38.351	1	334310			13535	3041	8919	9011	18415;18416	18416		197			-0.0476135045639694
MPSYFCLWFV	10	Unmodified	_MPSYFCLWFV_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|92	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|92	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	646.7952270507812	2	646.795763	1291.57697	0.52787	0.00034143	-0.4676	-0.00030244	0.060268	3.8981E-05	646.7965461216569	80.302	0.92133	80.325	80.188	81.11	0.023605					62	32	3	0	0	0	0.36288	1	19398	19398		15.847	1.4418	1	209150	+		13536	7812	8920	9012	18417	18417					-0.05715215469649593
MPSYFCLWFV	10	Unmodified	_MPSYFCLWFV_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|92	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|92	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	646.795763	1291.57697	0.79656	0.00051521	-1.3714	-0.00088703	-0.57487	-0.00037182	647.2957758064543	80.302	0.78983	80.302	80.169	80.959	0	-0.011558	-0.00067634	NaN	15.847	43	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206530	+		13537	7812	8920	9012							-0.05715215469649593
MPTIQITAL	9	Unmodified	_MPTIQITAL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2806701660156	2	494.280803	986.547053	0.38241	0.00018902	-0.17999	-8.8966E-05	0.20242	0.00010005	494.280670432823	78.594	0.4209	78.594	78.394	78.815	0					35	14	3	0	0	0	0.11816	1	19018	19018		28.495	3.0952	1	404400			13538	2061	8921	9013	18418	18418					0.05324168856668621
MPTIQITAL	9	Unmodified	_MPTIQITAL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.28094482421875	2	494.280803	986.547053	0.47951	0.00023701	0.12721	6.2876E-05	0.60672	0.00029989	494.2807518288409	78.552	0.61564	78.582	78.374	78.99	0.030159					36	21	3	0	0	0	0.088609	1	18859	18859		34.932	2.6266	1	486090			13539	2061	8921	9013	18419	18419					0.05324168856668621
MPTQEVQEL	9	Oxidation (M)	_M(Oxidation (M))PTQEVQEL_		M(1)PTQEVQEL		M(48)PTQEVQEL	0	0	1		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7572631835938	2	545.757889	1089.50123	-0.17717	-9.6692E-05	-0.016611	-9.0655E-06	-0.19378	-0.00010576	545.7577521113743	44.87	0.76958	44.87	44.531	45.301	0					56	27	3	0	0	0	0.034936	1	8716	8716		47.594	16.326	1	285940			13540	1617	8922	9014	18420	18420		95			-0.03994521116214855
MPTQEVQEL	9	Oxidation (M)	_M(Oxidation (M))PTQEVQEL_		M(1)PTQEVQEL		M(56)PTQEVQEL	0	0	1		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7583618164062	2	545.757889	1089.50123	0.21288	0.00011618	0.017975	9.8098E-06	0.23086	0.00012599	545.7578606263306	46.543	1.5209	46.543	46.009	47.53	0					99	65	2	0	0	0	0.023873	1	9300	9300		55.503	17.327	1	590880			13541	1617	8922	9014	18421	18421		95			-0.03994521116214855
MPTQEVQEL	9	Oxidation (M)	_M(Oxidation (M))PTQEVQEL_		M(1)PTQEVQEL		M(40)PTQEVQEL	0	0	1		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7576904296875	2	545.757889	1089.50123	0.036254	1.9786E-05	-0.028391	-1.5495E-05	0.0078625	4.291E-06	545.7577686261313	44.823	0.80426	44.91	44.538	45.342	0.087543					57	30	3	0	0	0	0.064247	1	8617	8617		40.239	8.9709	1	264570			13542	1617	8922	9014	18422	18422		95			-0.03994521116214855
MPTQEVQEL	9	Unmodified	_MPTQEVQEL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.28515625	2	537.760432	1073.50631	0.24935	0.00013409	0.10695	5.7516E-05	0.3563	0.00019161	537.7602485957717	52.913	0.45934	52.913	52.729	53.188	0					34	16	3	0	0	0	0.15837	1	11183	11183		34.932	5.8505	1	433620			13543	1617	8922	9015	18423	18423					-0.027502172536060243
MPTQEVQEL	9	Unmodified	_MPTQEVQEL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.28515625	2	537.760432	1073.50631	0.54991	0.00029572	0.0068897	3.705E-06	0.5568	0.00029943	537.7601479654024	52.875	0.43634	52.941	52.77	53.206	0.06543					41	19	3	0	0	0	0.20294	1	11039	11039		24.991	0	1	331500			13544	1617	8922	9015	18424	18424					-0.027502172536060243
MPTTERVTL	9	Unmodified	_MPTTERVTL_					0	0	0		nc|ENSG00000137752|P29466-5|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-2|CASP1;ENSG00000137752|ENST00000533400|CASP1	nc|ENSG00000137752|P29466-5|CASP1	nc|ENSG00000137752|P29466-5|CASP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2785034179688	2	524.278792	1046.54303	-0.19355	-0.00010147	-0.51292	-0.00026891	-0.70647	-0.00037039	524.2785259650199	44.557	0.63911	44.557	44.329	44.968	0					44	22	3	0	0	0	0.034936	3	8659	8627;8659;8709		47.594	23.574	1	257640			13545	2864	8923	9016	18425;18426;18427	18426					0.021620793629836044
MPTTERVTL	9	Unmodified	_MPTTERVTL_					0	0	0		nc|ENSG00000137752|P29466-5|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-2|CASP1;ENSG00000137752|ENST00000533400|CASP1	nc|ENSG00000137752|P29466-5|CASP1	nc|ENSG00000137752|P29466-5|CASP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2777709960938	2	524.278792	1046.54303	-0.085349	-4.4747E-05	-0.49267	-0.00025829	-0.57801	-0.00030304	524.278588038964	44.452	0.4916	44.539	44.334	44.825	0.08754					35	17	3	0	0	0	0.2779	1	8552	8552		9.544	3.8121	1	191600			13546	2864	8923	9016	18428	18428					0.021620793629836044
MPVAEGKSV	9	Unmodified	_MPVAEGKSV_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20;ENST00000467535.5_1_6:41880803-41888587:-|nuORF	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2414855957031	2	459.241678	916.468803	-0.016988	-7.8016E-06	-0.13458	-6.1803E-05	-0.15156	-6.9605E-05	459.241638486827	30.295	0.44066	30.295	30.169	30.61	0					41	23	2	0	0	0	0.11816	1	4386	4386		28.495	15.452	1	81270			13547	2267	8924	9017	18429	18429					0.0072273627146159924
MPVAEGKSV	9	Unmodified	_MPVAEGKSV_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20;ENST00000467535.5_1_6:41880803-41888587:-|nuORF	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2415771484375	2	459.241678	916.468803	-0.21067	-9.6749E-05	0.011273	5.1771E-06	-0.1994	-9.1572E-05	459.24171556101425	30.261	0.33832	30.336	30.211	30.55	0.075403					36	20	2	0	0	0	0.20162	1	4261	4261		18.373	7.5492	1	61893			13548	2267	8924	9017	18430	18430					0.0072273627146159924
MPVCHTGKRVI	11	Unmodified	_MPVCHTGKRVI_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.8361206054688	2	620.836285	1239.65802	-0.40058	-0.00024869	-0.26795	-0.00016635	-0.66852	-0.00041504	620.8361492178628	28.049	0.28674	28.131	27.969	28.256	0.082134					27	16	2	0	0	0	0.41369	2	3580	3580;3623		1.1933	0.66858	1	38782			13549	3946	8925	9018	18431;18432	18431					0.0477748529310702
MPVDDVIGTL	10	Unmodified	_MPVDDVIGTL_					0	0	0		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2731323242188	2	530.273175	1058.5318	0.51288	0.00027197	-0.10565	-5.6025E-05	0.40723	0.00021594	530.272983930259	78.009	0.43633	78.044	77.768	78.205	0.034485					23	14	2	0	0	0	0.24016	1	18700	18700		29.082	5.061	1	181120			13550	2999	8926	9019	18433	18433					0.00487257268855501
MPVHAAVQM	9	Oxidation (M)	_MPVHAAVQM(Oxidation (M))_		MPVHAAVQM(1)		M(-78)PVHAAVQM(78)	0	0	1		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.24114990234375	2	500.241155	998.467757	-0.092091	-4.6068E-05	1.7172	0.00085903	1.6251	0.00081296	500.24206039962957	31.583	0.79629	31.583	31.387	32.183	0					79	33	4	0	0	0	0.0065046	2	4753	4753;4791		77.984	59.849	2	287490			13551	772	8927	9020	18434;18435	18434		42			-0.0315380136909198
MPVHAAVQM	9	Oxidation (M)	_MPVHAAVQM(Oxidation (M))_		MPVHAAVQM(1)		M(-51)PVHAAVQM(51)	0	0	1		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.240966796875	2	500.241155	998.467757	0.029164	1.4589E-05	-0.22274	-0.00011142	-0.19358	-9.6834E-05	500.24123593333223	34.221	0.95721	34.221	33.548	34.505	0					71	36	3	0	0	0	0.030375	1	5545	5545		50.855	32.72	2	92770			13552	772	8927	9020	18436	18436		42			-0.0315380136909198
MPVHAAVQM	9	Oxidation (M)	_MPVHAAVQM(Oxidation (M))_		MPVHAAVQM(1)		M(-78)PVHAAVQM(78)	0	0	1		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.24114990234375	2	500.241155	998.467757	-0.044891	-2.2456E-05	1.7461	0.00087347	1.7012	0.00085101	500.24201024816205	31.548	0.93323	31.622	31.421	32.355	0.073782					77	43	2	0	0	0	0.0065046	2	4621	4621;4663		77.984	54.836	2	260840			13553	772	8927	9020	18437;18438	18437		42			-0.0315380136909198
MPVHAAVQM	9	Oxidation (M)	_MPVHAAVQM(Oxidation (M))_		MPVHAAVQM(1)		M(-44)PVHAAVQM(44)	0	0	1		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2410888671875	2	500.241155	998.467757	0.069831	3.4932E-05	0.32518	0.00016267	0.39501	0.0001976	500.24125217689476	34.037	0.84737	34.113	33.72	34.567	0.076244					81	35	3	0	0	0	0.045114	1	5361	5361		44.407	26.272	2	103980			13554	772	8927	9020	18439	18439		42			-0.0315380136909198
MPVHAAVQM	9	Unmodified	_MPVHAAVQM_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.243896484375	2	492.243698	982.472843	-0.28952	-0.00014252	0.58153	0.00028625	0.292	0.00014374	492.24421101956966	42.148	0.38329	42.237	42.048	42.431	0.089764					24	14	2	0	0	0	0.045114	1	7828	7828		44.407	14.182	1	93262			13555	772	8927	9021	18440	18440					-0.019094975064831488
MPVHAAVQM	9	Unmodified	_MPVHAAVQM_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	492.243698	982.472843	-0.45074	-0.00022187	-0.60157	-0.00029612	-1.0523	-0.00051799	492.2433499240346	42.217	0.36612	42.217	42.057	42.423	0	-0.010386	-0.00032868	NaN	44.407	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95856			13556	772	8927	9021							-0.019094975064831488
MPVILEVSL	9	Unmodified	_MPVILEVSL_					0	0	0		ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7912292480469	2	500.791004	999.567454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.543	1	89.543	89.043	90.043	0								0	0	0	0.1048	1	22362	22362		32.305	6.9062	1				13557	2795	8928	9022	18441	18441					0.06765339516505264
MPVILEVSL	9	Unmodified	_MPVILEVSL_					0	0	0		ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.79107666015625	2	500.791004	999.567454	0.2027	0.00010151	-0.69852	-0.00034981	-0.49581	-0.0002483	500.79069395563596	89.375	0.48004	89.375	89.194	89.674	0					28	17	2	0	0	0	0.15911	1	22297	22297		32.305	17.467	1	148010			13558	2795	8928	9022	18442	18442					0.06765339516505264
MPVILEVSL	9	Unmodified	_MPVILEVSL_					0	0	0		ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7903137207031	2	500.791004	999.567454	0.2449	0.00012264	-0.65375	-0.00032739	-0.40885	-0.00020475	500.790579113055	89.31	0.39181	89.342	89.117	89.509	0.032257					30	14	3	0	0	0	0.11896	1	22107	22107		39.957	18.211	1	291460			13559	2795	8928	9022	18443	18443					0.06765339516505264
MPVIPPLF	8	Unmodified	_MPVIPPLF_					0	0	0		AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|9|3|sense	AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|9|3|sense	AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|9|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2641296386719	2	457.264425	912.514297	0.50293	0.00022997	-0.42186	-0.0001929	0.08107	3.707E-05	457.26415319391543	74.365	1.5564	74.365	74.095	75.652	0					109	58	3	0	0	0	0.54081	1	18006	18006		0.79363	0	1	276670			13560	27	8929	9023	18444	18444					0.05454006524496435
MPVIPPLF	8	Unmodified	_MPVIPPLF_					0	0	0		AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|9|3|sense	AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|9|3|sense	AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|9|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2642517089844	2	457.264425	912.514297	0.30981	0.00014166	-0.23884	-0.00010921	0.070967	3.2451E-05	457.2641738472786	74.492	1.608	74.541	74.016	75.624	0.048546					111	58	3	0	0	0	0.53771	1	17530	17530		2.8892	2.8892	1	216580			13561	27	8929	9023	18445	18445					0.05454006524496435
MPVLEQSVL	9	Unmodified	_MPVLEQSVL_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000126012|P41229-2|KDM5C;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2781677246094	2	508.27826	1014.54197	0.30725	0.00015617	-0.025165	-1.2791E-05	0.28208	0.00014338	508.2780898955429	71.489	0.45733	71.489	71.269	71.726	0					35	15	3	0	0	0	0.034936	2	16837	16837;16886		47.594	19.966	1	633780			13562	797;2325	8930	9024	18446;18447	18446					0.03527864994077845
MPVLEQSVL	9	Unmodified	_MPVLEQSVL_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000126012|P41229-2|KDM5C;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2784729003906	2	508.27826	1014.54197	0.31286	0.00015902	-0.14093	-7.1634E-05	0.17193	8.7387E-05	508.2780944138348	71.392	0.49625	71.451	71.211	71.707	0.058578					42	17	3	0	0	0	0.034936	2	16664	16664;16710		47.594	19.966	1	756920			13563	797;2325	8930	9024	18448;18449	18448					0.03527864994077845
MPVPEILQL	9	Oxidation (M)	_M(Oxidation (M))PVPEILQL_		M(1)PVPEILQL		M(56)PVPEILQL	0	0	1		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2940673828125	2	528.293911	1054.57327	0.77124	0.00040744	-0.41122	-0.00021725	0.36001	0.00019019	528.2936067569366	81.558	1.0254	81.558	81.145	82.17	0					87	35	3	0	0	0	0.02293	2	19967	19917;19967		56.177	20.05	1	406480			13564	4990	8931	9025	18450;18451	18451		290			0.048164380281832564
MPVPEILQL	9	Oxidation (M)	_M(Oxidation (M))PVPEILQL_		M(1)PVPEILQL		M(48)PVPEILQL	0	0	1		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.293701171875	2	528.293911	1054.57327	0.42834	0.00022629	-0.095574	-5.0491E-05	0.33276	0.0001758	528.2937822557258	81.575	1.0919	81.597	81.228	82.32	0.021866					91	39	4	0	0	0	0.03472	2	19750	19750;19778		47.749	11.622	1	479280			13565	4990	8931	9025	18452;18453	18452		290			0.048164380281832564
MPVPEILQL	9	Unmodified	_MPVPEILQL_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.8182983398438	2	520.296453	1038.57835	0.40403	0.00021022	-0.12838	-6.6794E-05	0.27566	0.00014342	520.2962710773521	88.576	0.6375	88.576	88.345	88.982	0					57	25	3	0	0	0	0.089428	1	22086	22086		47.749	18.667	1	550520			13566	4990	8931	9026	18454	18454					0.060607418907920874
MPVPEILQL	9	Unmodified	_MPVPEILQL_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.8184204101562	2	520.296453	1038.57835	0.3332	0.00017336	-0.10847	-5.6437E-05	0.22473	0.00011693	520.2962728965035	88.585	0.57661	88.617	88.358	88.934	0.032265					59	23	3	0	0	0	0.089428	1	21934	21934		47.749	11.622	1	413640			13567	4990	8931	9026	18455	18455					0.060607418907920874
MPVQLPLAHS	10	Unmodified	_MPVQLPLAHS_					0	0	0		ENST00000518039.1_1_8:22106011-22107622:+|nuORF;ENST00000398689.2_1_10:76415232-76415652:+|nuORF;ENSG00000168495|ENST00000306433|POLR3D	ENST00000518039.1_1_8:22106011-22107622:+|nuORF	ENST00000518039.1_1_8:22106011-22107622:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7943725585938	2	546.797152	1091.57975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.899	1	23.999	23.499	24.499	0.099739								0	0	0	0.33892	1	2414	2414		1.4819	0.79152	1				13568	4296	8932	9027	18456	18456					0.03762375979522403
MPVRAADKL	9	Unmodified	_MPVRAADKL_					0	0	0		ENST00000557663.1_1_14:78205086-78227470:-|nuORF;ENSG00000100603|ENST00000261531|SNW1	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.78399658203125	2	500.784044	999.553536	-0.1142	-5.7191E-05	0.13	6.5103E-05	0.0158	7.9122E-06	500.78406567414504	30.611	1.0502	30.611	30.382	31.432	0					107	53	3	0	0	0	0.029291	2	4493	4449;4493		51.63	13.656	1	420280			13569	7136	8933	9028	18457;18458	18458					0.05374106808051238
MPVRAADKL	9	Unmodified	_MPVRAADKL_					0	0	0		ENST00000557663.1_1_14:78205086-78227470:-|nuORF;ENSG00000100603|ENST00000261531|SNW1	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.78399658203125	2	500.784044	999.553536	-0.072903	-3.6509E-05	-0.10543	-5.2796E-05	-0.17833	-8.9305E-05	500.7840418410924	30.572	0.80219	30.647	30.426	31.228	0.075403					122	45	4	0	0	0	0.029591	3	4357	4323;4357;4396		51.415	20.779	1	396870			13570	7136	8933	9028	18459;18460;18461	18460					0.05374106808051238
MPVTAPPPGP	10	Unmodified	_MPVTAPPPGP_					0	0	0			REV__nc|ENSG00000126562|Q96J92-3|WNK4	REV__nc|ENSG00000126562|Q96J92-3|WNK4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.25152587890625	2	482.252046	962.489538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.701	1	28.779	28.279	29.279	0.078287								0	0	0	0.33877	1	3791	3791		1.6526	0	1		+		13571	8990	8934	9029	18462	18462					0.006793266511181173
MPWILTDHIL	10	Unmodified	_MPWILTDHIL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8340454101562	2	619.833734	1237.65292	0.069464	4.3056E-05	0.46134	0.00028596	0.53081	0.00032901	619.8337991247781	82.627	0.39064	82.627	82.482	82.872	0					19	13	2	0	0	0	0.19399	1	20277	20277		34.402	19.996	1	182410			13572	611	8935	9030	18463	18463					0.043595047021653954
MPWILTDHIL	10	Unmodified	_MPWILTDHIL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8335571289062	2	619.833734	1237.65292	-0.016713	-1.0359E-05	0.0084653	5.2471E-06	-0.0082474	-5.112E-06	619.8338969848264	82.599	0.32065	82.62	82.475	82.795	0.021744					18	10	2	0	0	0	0.055325	2	20103	20103;20122		56.177	36.815	1	146240			13573	611	8935	9030	18464;18465	18464					0.043595047021653954
MPWRPSRF	8	Unmodified	_MPWRPSRF_					0	0	0			REV__ENST00000288502.8_2_9:117405626-117405680:+|nuORF	REV__ENST00000288502.8_2_9:117405626-117405680:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7764892578125	2	538.776554	1075.53855	0.2098	0.00011303	0.33885	0.00018256	0.54864	0.0002956	538.7767196131302	104.03	0.50944	104.03	103.86	104.37	0					75	49	2	0	0	0	0.53026	2	26799	26724;26799		7.9102	7.9102	1	177560	+		13574	11312	8936	9031	18466;18467	18467					0.0038065973071752524
MPWRPSRF	8	Unmodified	_MPWRPSRF_					0	0	0			REV__ENST00000288502.8_2_9:117405626-117405680:+|nuORF	REV__ENST00000288502.8_2_9:117405626-117405680:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3204345703125	2	538.776554	1075.53855	0.2098	0.00011303	0.33885	0.00018256	0.54864	0.0002956	538.7767196131302	104.03	0.50944	104.03	103.86	104.37	0					75	49	2	0	0	0	0.3576	1	26821	26821		1.8442	0	1	177560	+		13575	11312	8936	9031	18468	18468					0.0038065973071752524
MPYGSRENSL	10	Unmodified	_MPYGSRENSL_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.2697143554688	2	577.268955	1152.52336	0.249	0.00014374	0.47243	0.00027272	0.72143	0.00041646	577.2692380441378	36.863	0.45015	36.863	36.636	37.086	0					26	16	2	0	0	0	0.43214	1	6348	6348		8.1555	3.8263	1	55522			13576	3085	8937	9032	18469	18469					-0.04680296647779869
MPYGSRENSL	10	Unmodified	_MPYGSRENSL_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	577.268955	1152.52336	0.249	0.00014374	0.47243	0.00027272	0.72143	0.00041646	577.2692380441378	36.863	0.45015	36.863	36.636	37.086	0	0.012267	6.304E-05	NaN	8.1555	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55522			13577	3085	8937	9032							-0.04680296647779869
MPYGSRENSL	10	Unmodified	_MPYGSRENSL_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	577.268955	1152.52336	0.29192	0.00016852	0.28182	0.00016268	0.57374	0.0003312	577.2694234522106	36.756	0.3245	36.838	36.662	36.987	0.081711	-0.012267	-0.00015703	NaN	8.1555	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73169			13578	3085	8937	9032							-0.04680296647779869
MPYIPLMEF	9	Unmodified	_MPYIPLMEF_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.792724609375	2	570.777039	1139.53953	0.19837	0.00011322	-3.0195	-0.0017235	-2.8212	-0.0016103	570.7752131267922	39.063	0.32578	39.15	38.994	39.32	0.08688					19	12	2	0	0	0	0.3182	2	6862	6862;6894		4.3292	2.485	1	33487			13579	2345	8938	9033	18470;18471	18470					-0.02466306735254875
MPYLEHESF	9	Unmodified	_MPYLEHESF_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.7554931640625	2	576.755149	1151.49575	0.59892	0.00034543	0.057769	3.3318E-05	0.65669	0.00037875	576.7551132233016	54.741	0.73083	54.741	54.587	55.318	0					54	28	3	0	0	0	0.00038046	2	11755	11755;11822		133.7	105.22	1	453090			13580	1117	8939	9034	18472;18473	18472					-0.07394199908048904
MPYLEHESF	9	Unmodified	_MPYLEHESF_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.7557373046875	2	576.755149	1151.49575	0.64896	0.00037429	-0.089346	-5.1531E-05	0.55962	0.00032276	576.7550371126799	54.683	0.6038	54.748	54.612	55.216	0.065128					51	25	3	0	0	0	0.0046499	1	11587	11587		85.272	73.632	1	433040			13581	1117	8939	9034	18474	18474					-0.07394199908048904
MPYLEHESF	9	Oxidation (M)	_M(Oxidation (M))PYLEHESF_		M(1)PYLEHESF		M(74)PYLEHESF	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7855834960938	2	584.752607	1167.49066	0.51366	0.00030036	0.89908	0.00052574	1.4127	0.0008261	584.7532675216978	47.864	1.389	47.864	47.499	48.888	0					101	47	3	0	0	0	0.01209	1	9668	9668		74.423	60.808	1	181410			13582	1117	8939	9035	18475	18475		62			-0.08638503770657735
MPYLEHESF	9	Oxidation (M)	_M(Oxidation (M))PYLEHESF_		M(1)PYLEHESF		M(71)PYLEHESF	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7855224609375	2	584.752607	1167.49066	0.83612	0.00048893	0.51822	0.00030303	1.3543	0.00079196	584.7529921176317	47.811	1.582	47.892	47.428	49.01	0.080029					101	57	3	0	0	0	0.015182	1	9511	9511		71.134	49.597	1	178820			13583	1117	8939	9035	18476	18476		62			-0.08638503770657735
MPYNYPVLL	9	Unmodified	_MPYNYPVLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2883911132812	2	555.288628	1108.5627	0.60543	0.00033619	-0.042064	-2.3358E-05	0.56336	0.00031283	555.2885718227132	81.971	0.97212	81.993	81.676	82.648	0.021866					45	22	3	0	0	0	0.21398	1	19910	19910		16.942	2.104	1	274750			13584	1329	8940	9036	18477	18477					0.012764553737270035
MQFGRAFYM	9	Unmodified	_MQFGRAFYM_					0	0	0			REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6	REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7608032226562	2	575.762255	1149.50996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.534	1	90.534	90.034	91.034	0								0	0	0	0.27613	1	22666	22666		3.9444	0.3479	1		+		13585	10024	8941	9037	18478	18478					-0.05881825960727838
MQGHLKDMK	9	Unmodified	_MQGHLKDMK_					0	0	0		ENST00000396408.7_1_19:53911016-53911145:+|nuORF	ENST00000396408.7_1_19:53911016-53911145:+|nuORF	ENST00000396408.7_1_19:53911016-53911145:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2739868164062	2	544.272986	1086.53142	0.36182	0.00019693	1.2202	0.00066413	1.582	0.00086107	544.2734250505464	101.42	0.41531	101.42	101.23	101.65	0					57	25	3	0	0	0	0.33978	1	26020	26020		1.4819	0.79152	1	100970			13586	6342	8942	9038	18479	18479					-0.008384409320115083
MQQEYHKDF	9	Unmodified	_MQQEYHKDF_					0	0	0			REV__ENSG00000109193|ENST00000226444|SULT1E1	REV__ENSG00000109193|ENST00000226444|SULT1E1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.18353271484375	3	409.181729	1224.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.302	1	72.358	71.858	72.858	0.055939								0	0	0	0.28409	1	16954	16954		1.1933	0.12188	1		+		13587	8637	8943	9039	18480	18480					-0.07992296647785224
MQQFGRTYYL	10	Unmodified	_MQQFGRTYYL_					0	0	0			REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.87872314453125	3	436.213141	1305.61759	-0.094619	-4.1274E-05	0.0020546	8.9626E-07	-0.092564	-4.0378E-05	436.54809468072176	33.983	0.29287	34.06	33.902	34.194	0.076244					15	11	2	0	0	0	0.31857	1	5343	5343		0	0	1	21925	+		13588	10830	8944	9040	18481	18481					-0.022991578256096545
MQQFQPQNRL	10	Unmodified	_MQQFQPQNRL_					0	0	0			REV__nc|ENSG00000119318|P54727-2|RAD23B	REV__nc|ENSG00000119318|P54727-2|RAD23B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.3280029296875	2	645.324596	1288.63464	0.25452	0.00016425	3.7545	0.0024229	4.009	0.0025871	645.3275121824851	57.468	0.37617	57.536	57.375	57.752	0.068375					27	13	3	0	0	0	0.46746	1	12510	12510		1.4819	0.41044	1	120000	+		13589	8853	8945	9041	18482	18482					0.0018676278016300785
MQRAFKTF	8	Unmodified	_MQRAFKTF_					0	0	0			REV__ENST00000467925.5_1_2:42935083-42946163:+|nuORF	REV__ENST00000467925.5_1_2:42935083-42946163:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.298583984375	2	514.770937	1027.52732	0.35222	0.00018131	-1.5915	-0.00081925	-1.2393	-0.00063794	514.7698970933792	90.672	0.39117	90.672	90.467	90.858	0					33	14	3	0	0	0	0.3576	1	22734	22734		3.5965	0	1	301720	+		13590	12013	8946	9042	18483	18483					0.014658376365787262
MQRKRNIQ	8	Unmodified	_MQRKRNIQ_					0	0	0			REV__ENST00000356884.10_1_9:95475770-95475854:-|nuORF	REV__ENST00000356884.10_1_9:95475770-95475854:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.3214721679688	2	537.303467	1072.59238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.512	1	59.512	59.012	60.012	0								0	0	0	0.385	1	13207	13207		19.439	1.304	1		+		13591	11510	8947	9043	18484	18484					0.05898832162438339
MQWPREWDLPI	11	Unmodified	_MQWPREWDLPI_					0	0	0			REV__nc|ENSG00000151665|Q07326-2|PIGF	REV__nc|ENSG00000151665|Q07326-2|PIGF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.9122314453125	3	490.911462	1469.71256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.414	1	42.504	42.004	43.004	0.089764								0	0	0	0.33867	1	7894	7894		1.2148	0	1		+		13592	12812	8948	9044	18485	18485					-0.0035122435444918665
MQYCKVNIYM	10	Unmodified	_MQYCKVNIYM_					0	0	0		ENST00000523821.5_1_8:97251664-97251712:-|nuORF	ENST00000523821.5_1_8:97251664-97251712:-|nuORF	ENST00000523821.5_1_8:97251664-97251712:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	646.7789306640625	2	646.795437	1291.57632	0.52787	0.00034143	0.036363	2.3519E-05	0.56423	0.00036494	646.7965461216569	80.302	0.92133	80.325	80.188	81.11	0.023605					62	32	3	0	0	0	0.44246	1	19609	19609		6.2058	0	1	209150			13593	6977	8949	9045	18486	18486					-0.05780378180998014
MRAAFTAFEE	10	Unmodified	_MRAAFTAFEE_					0	0	0		ENSG00000007080|ENST00000445755|CCDC124	ENSG00000007080|ENST00000445755|CCDC124	ENSG00000007080|ENST00000445755|CCDC124	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7908935546875	2	586.773874	1171.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.622	1	55.687	55.187	56.187	0.065128								0	0	0	0.3327	1	11890	11890		8.7454	1.1365	1				13594	378	8950	9046	18487	18487					-0.04571108642426225
MRCRCSSMHF	10	Unmodified	_MRCRCSSMHF_					0	0	0		ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF;ENST00000462639.1_1_X:23803617-23803970:+|nuORF	ENSG00000130066|ENST00000379270|SAT1	ENSG00000130066|ENST00000379270|SAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8396606445312	2	629.25903	1256.50351	0.39472	0.00024838	-0.074018	-4.6577E-05	0.3207	0.0002018	629.2585147262254	98.406	0.85353	98.406	98.116	98.97	0					88	46	2	0	0	0	0.31811	1	24984	24984		2.9952	0.93549	1	1030200			13595	2449	8951	9047	18488	18488					-0.1144841045540943
MREFGIADPD	10	Unmodified	_MREFGIADPD_					0	0	0		ENST00000592329.1_1_17:73974613-73975103:-|nuORF;ENST00000589301.1_1_17:73953610-73974899:-|nuORF;ENST00000591857.5_1_17:73953534-73975166:-|nuORF;nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	ENST00000592329.1_1_17:73974613-73975103:-|nuORF	ENST00000592329.1_1_17:73974613-73975103:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.3456420898438	2	575.763506	1149.51246	0.5765	0.00033193	-2.1677	-0.0012481	-1.5912	-0.00091615	575.7619748378117	92.676	0.20979	92.676	92.531	92.741	0					10	7	2	0	0	0	0.31761	1	23328	23328		5.2969	0	1	97020			13596	3795	8952	9048	18489	18489					-0.0563169902206937
MRESTHLYLF	10	Unmodified	_MRESTHLYLF_					0	0	0			REV__ENSG00000110046|ENST00000377264|ATG2A	REV__ENSG00000110046|ENST00000377264|ATG2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.88519287109375	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.46	1	101.5	101	102	0.042656								0	0	0	0.33952	1	25835	25835		0.77653	0	1		+		13597	8656	8953	9049	18490	18490					-0.002748713086020871
MRGHIQLR	8	Unmodified	_MRGHIQLR_					0	0	0		ENST00000515007.6_1_5:77784418-77784583:-|nuORF	ENST00000515007.6_1_5:77784418-77784583:-|nuORF	ENST00000515007.6_1_5:77784418-77784583:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7722473144531	2	505.787453	1009.56035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.192	1	22.294	21.794	22.794	0.10178								0	0	0	0.38822	1	1957	1957		7.9102	3.1541	1				13598	6932	8954	9050	18491	18491					0.05595464479290513
MRGKRKLPE	9	Unmodified	_MRGKRKLPE_					0	0	0			REV__MPO|p.V657M|1|0.32|ENSG00000005381|chr17:58271716-58271716|C/T|missense_variant	REV__MPO|p.V657M|1|0.32|ENSG00000005381|chr17:58271716-58271716|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2338256835938	2	557.829317	1113.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.686	1	21.686	21.186	22.186	0								0	0	0	0.2927	1	1919	1919		0.52476	0	1		+		13599	12738	8955	9051	18492	18492					0.09180575856339601
MRHCWGPC	8	Unmodified	_MRHCWGPC_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.3891906738281	2	495.198767	988.382982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.039	1	13.039	12.539	13.539	0								0	0	0	0.38822	1	153	153		0	0	1				13600	7527	8956	9052	18493	18493					-0.11167450386710698
MRKGIRWLIEL	11	Unmodified	_MRKGIRWLIEL_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.28375244140625	3	472.28323	1413.82786	0.044423	2.098E-05	1.2945	0.00061136	1.3389	0.00063234	472.28390223262744	95.583	1.9189	95.583	94.685	96.604	0					122	88	2	0	0	0	0.41254	2	24130	24027;24130		1.4551	0.12547	1	964250			13601	4936	8957	9053	18494;18495	18495					0.1374992456721884
MRKGIRWLIEL	11	Unmodified	_MRKGIRWLIEL_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2748718261719	3	472.28323	1413.82786	0.19807	9.3547E-05	0.14501	6.8486E-05	0.34308	0.00016203	472.283247857646	94.076	0.82183	94.076	94.015	94.837	0					79	36	3	0	0	0	0.31097	1	23759	23759		1.2148	0.70888	1	139200			13602	4936	8957	9053	18496	18496					0.1374992456721884
MRKGIRWLIEL	11	Unmodified	_MRKGIRWLIEL_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.28363037109375	3	472.28323	1413.82786	0.15756	7.4412E-05	-0.16469	-7.778E-05	-0.0071322	-3.3684E-06	472.2829794236352	93.883	1.0096	93.921	93.069	94.079	0.038094					95	47	3	0	0	0	0.311	1	23488	23488		0.50596	0.051438	1	418580			13603	4936	8957	9053	18497	18497					0.1374992456721884
MRKLWERLP	9	Unmodified	_MRKLWERLP_					0	0	0		ENSG00000170426|ENST00000293502|SDR9C7	ENSG00000170426|ENST00000293502|SDR9C7	ENSG00000170426|ENST00000293502|SDR9C7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.2263488769531	3	410.237621	1227.69103	0.149	6.1127E-05	4.4051	0.0018071	4.5541	0.0018683	410.2394768675281	38.037	0.2736	38.121	37.96	38.233	0.084476					15	10	2	0	0	0	0.25579	1	6609	6609		2.4985	0	1	12808			13604	4392	8958	9054	18498	18498					0.08629435407488018
MRKVCLML	8	Unmodified	_MRKVCLML_					0	0	0		ENST00000560532.1_1_15:59193425-59193485:-|nuORF	ENST00000560532.1_1_15:59193425-59193485:-|nuORF	ENST00000560532.1_1_15:59193425-59193485:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.46343994140625	2	497.273944	992.533334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.895	1	95.934	95.434	96.434	0.038872								0	0	0	0.38822	1	24140	24140		0.79363	0.19213	1				13605	7148	8959	9055	18499	18499					0.03676896552246944
MRLGCVQGL	9	Oxidation (M)	_M(Oxidation (M))RLGCVQGL_		M(1)RLGCVQGL		M(48)RLGCVQGL	0	0	1			REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF	REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7564697265625	2	496.75443	991.494306	0.46469	0.00023084	2.9379	0.0014594	3.4026	0.0016902	496.7559341170092	57.206	0.41758	57.206	57.046	57.463	0					22	14	2	0	0	0	0.033885	1	12522	12522		48.346	8.3961	1	131300	+		13606	11985	8960	9056	18500	18500		343			-0.0017811247776080563
MRLGCVQGL	9	Oxidation (M)	_M(Oxidation (M))RLGCVQGL_					0	0	1			REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF	REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	496.75443	991.494306	0.46469	0.00023084	2.9379	0.0014594	3.4026	0.0016902	496.7559341170092	57.206	0.41758	57.206	57.046	57.463	0	0.0026726	-6.5093E-06	NaN	48.346	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131300	+		13607	11985	8960	9056				343			-0.0017811247776080563
MRLGCVQGL	9	Oxidation (M)	_M(Oxidation (M))RLGCVQGL_					0	0	1			REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF	REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	496.75443	991.494306	0.50809	0.0002524	2.9514	0.0014661	3.4595	0.0017185	496.75596744379106	57.133	0.34982	57.201	57.043	57.393	0.068375	-0.0026726	6.9662E-06	NaN	48.346	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82312	+		13608	11985	8960	9056				343			-0.0017811247776080563
MRLSFFKR	8	Unmodified	_MRLSFFKR_					0	0	0			REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|85	REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|85	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.8082885742188	2	542.807854	1083.60115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.01	1	104.01	103.51	104.51	0								0	0	0	0.38822	1	26751	26751		2.0598	0	1		+		13609	7797	8961	9057	18501	18501					0.06269805798910966
MRPLMHSVW	9	Unmodified	_MRPLMHSVW_					0	0	0			REV__ENST00000304863.5_1_19:29698858-29698915:-|nuORF	REV__ENST00000304863.5_1_19:29698858-29698915:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.293212890625	2	578.791346	1155.56814	0.46213	0.00026748	-2.1483	-0.0012434	-1.6862	-0.00097593	579.2902263525889	94.085	0.73438	94.124	93.983	94.717	0.038086					47	32	2	0	0	0	0.32112	1	23674	23674		3.9444	0	1	244860	+		13610	11354	8962	9058	18502	18502					-0.0034214431543659884
MRPQFGEDY	9	Unmodified	_MRPQFGEDY_					0	0	0		tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3278198242188	2	571.750398	1141.48624	0.047157	2.6962E-05	2.7156	0.0015526	2.7627	0.0015796	572.2522513573311	45.85	0.12489	45.936	45.885	46.009	0.085621					5	4	2	0	0	0	0.259	1	8949	8949		1.6526	1.1943	1	12773			13611	13725	8963	9059	18503	18503					-0.07883968193527835
MRPVHWLVC	9	Unmodified	_MRPVHWLVC_					0	0	0			REV__ENST00000371730.6_1_1:51934182-51934233:-|nuORF	REV__ENST00000371730.6_1_1:51934182-51934233:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.794921875	2	570.793889	1139.57323	0.0094918	5.4179E-06	-0.22932	-0.00013089	-0.21982	-0.00012547	570.7938059065837	34.6	0.88065	34.6	34.181	35.062	0					59	34	2	0	0	0	0.34704	1	5737	5737		0.52476	0	1	39480	+		13612	11601	8964	9060	18504	18504					0.009021595471722321
MRQMWFPR	8	Unmodified	_MRQMWFPR_					0	0	0			REV__ENST00000399325.2_1_X:133406709-133407198:+|nuORF	REV__ENST00000399325.2_1_X:133406709-133407198:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2835083007812	2	576.283689	1150.55282	-0.037898	-2.184E-05	1.0572	0.00060927	1.0193	0.00058743	576.2847788488336	32.728	0.79057	32.801	32.355	33.145	0.073784					66	39	3	0	0	0	0.53858	1	4977	4977		2.3027	0	1	92364	+		13613	11743	8965	9061	18505	18505					-0.01643011112628301
MRREWEARM	9	Unmodified	_MRREWEARM_					0	0	0		nc|ENSG00000188487|Q1MX18-3|INSC;ENST00000447214.6_1_11:15209769-15267583:+|nuORF	nc|ENSG00000188487|Q1MX18-3|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.2377624511719	3	422.206103	1263.59648	-0.19131	-8.0774E-05	-0.90199	-0.00038082	-1.0933	-0.0004616	422.206057681605	24.615	0.27645	24.711	24.511	24.787	0.096073					44	21	3	0	0	0	0.25952	1	2561	2561		1.1933	0	1	25298			13614	6549	8966	9062	18506	18506					-0.024774464061692925
MRRNMDIRE	9	Unmodified	_MRRNMDIRE_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.286865234375	3	407.537741	1219.59139	-0.0090762	-3.6989E-06	0.055412	2.2582E-05	0.046335	1.8883E-05	407.53773963951284	59.643	1.0022	59.716	59.33	60.332	0.072338					51	27	3	0	0	0	0.25594	1	13080	13080		4.897	0.95262	1	246920			13615	3475	8967	9063	18507	18507					-0.009617502687660817
MRRRKRIER	9	Unmodified	_MRRRKRIER_					0	0	0			REV__NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant	REV__NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8819580078125	3	434.266685	1299.77822	0.16033	6.9624E-05	1.0397	0.00045153	1.2001	0.00052115	434.2671779267202	91.727	0.24055	91.763	91.559	91.8	0.036453					11	8	2	0	0	0	0.25974	1	22825	22825		0.96228	0.33545	1	71214	+		13616	12742	8968	9064	18508	18508					0.1403265440173982
MRRRRRWTRRV	11	Unmodified	_MRRRRRWTRRV_					0	0	0		ENST00000281708.8_1_4:153271275-153332654:-|nuORF	ENST00000281708.8_1_4:153271275-153332654:-|nuORF	ENST00000281708.8_1_4:153271275-153332654:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.89019775390625	4	407.995834	1627.95423	0.11104	4.5304E-05	0.87719	0.00035789	0.98823	0.00040319	407.9961844844782	55.87	0.38799	55.935	55.704	56.092	0.065132					20	13	2	0	0	0	0.31102	1	11979	11979		0	0	1	63044			13617	5930	8969	9065	18509	18509					0.1653728863568631
MRSAVVDVED	10	Unmodified	_MRSAVVDVED_					0	0	0			REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7695922851562	2	560.768788	1119.52302	0.31783	0.00017823	2.4387	0.0013676	2.7566	0.0015458	560.7688947921829	90.443	0.57642	90.443	90.231	90.808	0					66	21	4	0	0	0	0.20801	1	22613	22613		32.786	5.1569	1	388290	+		13618	10026	8970	9066	18510	18510					-0.03195716367645218
MRSAVVDVED	10	Unmodified	_MRSAVVDVED_					0	0	0			REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	560.768788	1119.52302	0.31783	0.00017823	2.4387	0.0013676	2.7566	0.0015458	560.7688947921829	90.443	0.57642	90.443	90.231	90.808	0	0.022584	0.00025048	NaN	32.786	66	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388290	+		13619	10026	8970	9066							-0.03195716367645218
MRSYLRRA	8	Unmodified	_MRSYLRRA_					0	0	0			REV__nc|ENSG00000160360|Q86YR5|GPSM1	REV__nc|ENSG00000160360|Q86YR5|GPSM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7929077148438	2	526.792735	1051.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.405	1	15.478	14.978	15.978	0.072399								0	0	0	0.38822	1	488	488		0.69038	0	1		+		13620	9850	8971	9067	18511	18511					0.04719447133743415
MRYEHCSLFS	10	Unmodified	_MRYEHCSLFS_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.3190307617188	2	636.778633	1271.54271	0.48346	0.00030786	1.9394	0.001235	2.4229	0.0015428	636.779969537265	98.877	0.28047	98.919	98.818	99.099	0.041939					36	17	3	0	0	0	0.31712	1	25070	25070		6.7232	0.99131	1	76570			13621	6706	8972	9068	18512	18512					-0.08219663628528906
MSEMETLEIQL	11	Unmodified	_MSEMETLEIQL_					0	0	0			REV__ENST00000510751.5_1_5:169015420-169022772:+|nuORF	REV__ENST00000510751.5_1_5:169015420-169022772:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.8773498535156	3	441.877206	1322.60979	0.39531	0.00017468	1.738	0.00076799	2.1333	0.00094267	442.2125481000356	65.827	0.53899	65.894	65.543	66.082	0.066872					29	20	2	0	0	0	0.33929	1	14960	14960		13.519	1.2911	1	237490	+		13622	8026	8973	9069	18513	18513					-0.038610979280747415
MSEMETLEIQL	11	Unmodified	_MSEMETLEIQL_					0	0	0			REV__ENST00000510751.5_1_5:169015420-169022772:+|nuORF	REV__ENST00000510751.5_1_5:169015420-169022772:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	441.877206	1322.60979	0.39531	0.00017468	1.738	0.00076799	2.1333	0.00094267	442.2125481000356	65.827	0.53899	65.894	65.543	66.082	0.066872	0.051253	3.9211E-05	NaN	13.519	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237490	+		13623	8026	8973	9069							-0.038610979280747415
MSFFRCIA	8	Unmodified	_MSFFRCIA_					0	0	0		ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.24273681640625	2	487.732966	973.451379	-0.4925	-0.00024021	-0.57685	-0.00028135	-1.0694	-0.00052156	487.73265802915665	40.748	1.0887	40.748	40.505	41.594	0					90	38	4	0	0	0	0.53423	1	7716	7716		5.2307	5.2307	1	358370			13624	4533	8974	9070	18514	18514					-0.036408825352168606
MSHPFFLP	8	Unmodified	_MSHPFFLP_					0	0	0		ENST00000455502.5_1_7:93540047-93540227:+|nuORF	ENST00000455502.5_1_7:93540047-93540227:+|nuORF	ENST00000455502.5_1_7:93540047-93540227:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2424621582031	2	488.241481	974.468409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.346	1	41.436	40.936	41.936	0.089764								0	0	0	0.38822	1	7570	7570		5.7604	0.52976	1				13625	6584	8975	9071	18515	18515					-0.019846386577341946
MSHYWWFL	8	Unmodified	_MSHYWWFL_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2666015625	2	585.265487	1168.51642	0.26163	0.00015312	1.4784	0.00086526	1.74	0.0010184	585.2663932727831	30.061	0.35993	30.137	30.009	30.369	0.075405					39	23	2	0	0	0	0.54097	1	4193	4193		0.69038	0.088878	1	27903	+		13626	9972	8976	9072	18516	18516					-0.06109564737698747
MSLSVYYVTY	10	Unmodified	_MSLSVYYVTY_					0	0	0			REV__ENSG00000203756|ENST00000368143|TMEM244	REV__ENSG00000203756|ENST00000368143|TMEM244	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.869873046875	3	409.198497	1224.57366	0.31848	0.00013032	-2.2112	-0.00090483	-1.8928	-0.00077451	409.19741012252143	59.293	0.46437	59.293	59.093	59.558	0					20	17	2	0	0	0	0.31837	1	13161	13161		1.9064	1.3432	1	105290	+		13627	10932	8977	9073	18517	18517					-0.029641870426303285
MSNMWKDL	8	Unmodified	_MSNMWKDL_					0	0	0			REV__ENSG00000170006|ENST00000304385|TMEM154	REV__ENSG00000170006|ENST00000304385|TMEM154	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7324829101562	2	512.733163	1023.45177	-0.16986	-8.7095E-05	0.4289	0.00021991	0.25904	0.00013282	512.73301316957	44.782	1.2858	44.782	44.554	45.84	0					64	45	2	0	0	0	0.53202	1	9027	9027		6.7232	0	1	92527	+		13628	10194	8978	9074	18518	18518					-0.05901507606006362
MSRLPLLL	8	Unmodified	_MSRLPLLL_					0	0	0			REV__ENST00000405333.5_1_2:10581650-10581749:-|nuORF	REV__ENST00000405333.5_1_2:10581650-10581749:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7957763671875	2	471.793881	941.573209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.54	1	101.54	101.04	102.04	0								0	0	0	0.38822	1	26014	26014		2.8892	0	1		+		13629	11762	8979	9075	18519	18519					0.10008482818830089
MSSQASKS	8	Unmodified	_MSSQASKS_					0	0	0		nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENSG00000144554|ENST00000675286|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.19354248046875	2	413.192185	824.369817	0.14308	5.9118E-05	2.1033	0.00086908	2.2464	0.0009282	413.1934573831675	78.777	3.5462	78.807	77.461	81.007	0.030159					362	124	5	0	0	0	0.53494	1	18849	18849		4.756	1.8668	1	6509300			13630	3215	8980	9076	18520	18520					-0.04939286693456779
MSTKFMSFML	10	Unmodified	_MSTKFMSFML_					0	0	0			REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1	REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.2065734863281	3	408.193813	1221.55961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.431	1	39.431	38.931	39.931	0								0	0	0	0.33443	1	7121	7121		3.5871	0.85186	1		+		13631	10711	8981	9077	18521	18521					-0.04230879066926718
MSVEFEELL	9	Unmodified	_MSVEFEELL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7523193359375	2	548.765183	1095.51581	0.45706	0.00025082	0.36912	0.00020256	0.82617	0.00045338	548.7647268802399	85.78	0.3542	85.78	85.631	85.985	0					17	14	2	0	0	0	0.028398	1	21220	21220		52.268	12.311	1	68577			13632	4922	8982	9078	18522	18522					-0.028124489680521947
MSVVEGGLRA	10	Unmodified	_MSVVEGGLRA_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7583923339844	2	509.771134	1017.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.639	1	23.739	23.239	24.239	0.099739								0	0	0	0.33762	1	2344	2344		2.9952	0.69251	1				13633	5466	8983	9079	18523	18523					0.019652125657898978
MSVVNVGSSLW	11	Unmodified	_MSVVNVGSSLW_					0	0	0		ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant	ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant	ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7959594726562	2	589.797349	1177.58014	0.88369	0.0005212	-2.2467	-0.0013251	-1.363	-0.00080388	589.7950794402947	84.449	0.47088	84.449	84.367	84.838	0					63	30	3	0	0	0	0.091297	2	20819	20819;20876		47.594	11.088	1	1129500			13634	13772	8984	9080	18524;18525	18524					-0.0015424909124703845
MSVVNVGSSLW	11	Unmodified	_MSVVNVGSSLW_					0	0	0		ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant	ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant	ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7965698242188	2	589.797349	1177.58014	0.66435	0.00039183	-2.7784	-0.0016387	-2.1141	-0.0012469	589.7951874193343	84.447	0.45834	84.47	84.372	84.83	0.023132					49	35	2	0	0	0	0.16959	1	20661	20661		34.932	0	1	1110400			13635	13772	8984	9080	18526	18526					-0.0015424909124703845
MSYFGEHFW	9	Unmodified	_MSYFGEHFW_					0	0	0		ENST00000601247.5_1_19:17858586-17877404:+|nuORF;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2503662109375	2	602.250034	1202.48552	0.63591	0.00038298	0.44267	0.0002666	1.0786	0.00064958	602.2501895692664	96.751	0.72491	96.791	96.611	97.336	0.039772					97	34	5	0	0	0	0.31496	1	24416	24416		4.756	1.7608	1	1364500			13636	2469	8985	9081	18527	18527					-0.10762762842614393
MSYPQFGY	8	Unmodified	_MSYPQFGY_					0	0	0		ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4	ENSG00000113430|ENST00000231357|IRX4	ENSG00000113430|ENST00000231357|IRX4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.711181640625	2	496.712753	991.410954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.592	1	24.592	24.092	25.092	0								0	0	0	0.38822	1	2730	2730		2.3027	1.5091	1				13637	1801	8986	9082	18528	18528					-0.0850952565397165
MTEGQKRVDE	10	Unmodified	_MTEGQKRVDE_					0	0	0			REV__nc|ENSG00000066032|P26232-3|CTNNA2	REV__nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3007202148438	2	596.78497	1191.55539	0.4524	0.00026998	0.16046	9.5763E-05	0.61286	0.00036575	596.7849423485162	64.554	0.53806	64.554	64.382	64.92	0					38	19	3	0	0	0	0.39662	1	14735	14735		12.241	0	1	288350	+		13638	8107	8987	9083	18529	18529					-0.0327292896461131
MTEVILNYL	9	Unmodified	_MTEVILNYL_					0	0	0		ENST00000339875.9_1_4:164449783-164449840:-|nuORF	ENST00000339875.9_1_4:164449783-164449840:-|nuORF	ENST00000339875.9_1_4:164449783-164449840:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.30859375	2	548.291368	1094.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.223	1	98.223	97.723	98.723	0								0	0	0	0.23884	1	25005	25005		11.64	1.5664	1				13639	6083	8988	9084	18530	18530					0.02468134165542324
MTFDPQDIL	9	Unmodified	_MTFDPQDIL_					0	0	0		nc|ENSG00000085831|Q5SRH9-3|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2762451171875	2	540.257525	1078.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.539	1	80.539	80.039	81.039	0								0	0	0	0.24643	1	19628	19628		10.074	2.7847	1				13640	968	8989	9085	18531	18531					-0.03561315765273321
MTFDPQDIL	9	Unmodified	_MTFDPQDIL_					0	0	0		nc|ENSG00000085831|Q5SRH9-3|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2758178710938	2	540.257525	1078.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.483	1	80.506	80.006	81.006	0.023605								0	0	0	0.22204	1	19450	19450		14.838	4.7643	1				13641	968	8989	9085	18532	18532					-0.03561315765273321
MTKTVRYL	8	Unmodified	_MTKTVRYL_					0	0	0		DSG3|p.M40Kfs*13|1|0.11|ENSG00000134757|chr18:31457026-31457027|-/AGACTGTTAGGTATCTAATTAGCTC|frameshift_variant	DSG3|p.M40Kfs*13|1|0.11|ENSG00000134757|chr18:31457026-31457027|-/AGACTGTTAGGTATCTAATTAGCTC|frameshift_variant	DSG3|p.M40Kfs*13|1|0.11|ENSG00000134757|chr18:31457026-31457027|-/AGACTGTTAGGTATCTAATTAGCTC|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2611389160156	2	506.28642	1010.55829	0.34362	0.00017397	-0.32237	-0.00016321	0.021253	1.076E-05	506.2861702593784	62.834	0.36629	62.834	62.575	62.941	0					20	12	2	0	0	0	0.3576	1	14249	14249		4.3292	0.73274	1	119480			13642	302	8990	9086	18533	18533					0.05342990950816784
MTLWLTLPE	9	Unmodified	_MTLWLTLPE_					0	0	0		nc|ENSG00000124193|Q13247-2|SRSF6	nc|ENSG00000124193|Q13247-2|SRSF6	nc|ENSG00000124193|Q13247-2|SRSF6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3267822265625	2	552.293911	1102.57327	0.61982	0.00034232	-2.8433	-0.0015703	-2.2234	-0.001228	552.2925073745057	70.595	0.52068	70.595	70.391	70.912	0					24	18	2	0	0	0	0.23598	1	16665	16665		10.824	0	1	96317			13643	7494	8991	9087	18534	18534					0.026084380281417907
MTNFYLVLFY	10	Unmodified	_MTNFYLVLFY_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5640869140625	3	437.554504	1309.64168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.85	1	48.926	48.426	49.426	0.076607								0	0	0	0.3384	1	9834	9834		2.086	0.34373	1				13644	2149	8992	9088	18535	18535					-0.0007531739199748699
MTPEDFVQ	8	Unmodified	_MTPEDFVQ_					0	0	0		SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant;ENSG00000115840|ENST00000422440|SLC25A12	SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant	SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7157287597656	2	483.715493	965.416433	0.13842	6.6954E-05	0.93579	0.00045265	1.0742	0.00051961	483.7154306999388	70.092	1.4792	70.152	69.277	70.756	0.060562					111	58	3	0	0	0	0.50159	1	16301	16301		12.532	0.89125	1	280110			13645	1924	8993	9089	18536	18536					-0.06765846862151648
MTPPATLPPSL	11	Unmodified	_MTPPATLPPSL_					0	0	0			REV__nc|ENSG00000132359|Q684P5-3|RAP1GAP2	REV__nc|ENSG00000132359|Q684P5-3|RAP1GAP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2880249023438	2	562.804642	1123.59473	0.27352	0.00015394	-1.3845	-0.00077921	-1.111	-0.00062527	562.8042103944427	37.381	1.1211	37.381	36.776	37.897	0					80	41	3	0	0	0	0.3108	1	6606	6606		2.9952	0.69251	1	47043	+		13646	9112	8994	9090	18537	18537					0.03787823056882189
MTQKWIQSGH	10	Unmodified	_MTQKWIQSGH_					0	0	0		FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant;FLG|p.S2719Rfs*26|1|0.08|ENSG00000143631|chr1:152306729-152306730|-/ACACC|frameshift_variant;FLG|p.Q3155Sfs*61|1|0.08|ENSG00000143631|chr1:152305423-152305423|G/-|frameshift_variant;ENSG00000143631|ENST00000368799|FLG;CON__P20930	FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.2832641601562	2	608.30059	1214.58663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.275	1	66.275	65.775	66.775	0								0	0	0	0.33443	1	15274	15274		6.7232	0	1			+	13647	222	8995	9091	18538	18538					-0.012083111399078916
MTRFSASLT	9	Unmodified	_MTRFSASLT_					0	0	0			REV__nc|ENSG00000166452|Q9NQ31-2|AKIP1	REV__nc|ENSG00000166452|Q9NQ31-2|AKIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2794189453125	2	507.257859	1012.50117	0.463	0.00023486	0.73622	0.00037345	1.1992	0.00060831	507.761072467086	70.523	0.17043	70.523	70.447	70.618	0					8	5	2	0	0	0	0.24791	1	16591	16591		10.074	1.4806	1	64101	+		13648	10080	8996	9092	18539	18539					-0.004584763255593316
MTRMLNMLIVF	11	Unmodified	_MTRMLNMLIVF_					0	0	0		ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF	ENSG00000162341|ENST00000294309|TPCN2	ENSG00000162341|ENST00000294309|TPCN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.9136047363281	3	456.911528	1367.71276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.238	1	67.303	66.803	67.803	0.065071								0	0	0	0.33799	1	15415	15415		1.4551	0.24029	1				13649	3819	8997	9093	18540	18540					0.04360736049534353
MTSLVHLT	8	Unmodified	_MTSLVHLT_					0	0	0		ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.243896484375	2	451.244221	900.473888	-0.058899	-2.6578E-05	-0.24093	-0.00010872	-0.29983	-0.0001353	451.24409279738194	39.782	0.52906	39.87	39.583	40.112	0.088562					25	19	2	0	0	0	0.53858	1	7111	7111		2.3027	0	1	55633			13650	2381	8998	9094	18541	18541					0.019670401340590615
MTSSGFEWI	9	Unmodified	_MTSSGFEWI_					0	0	0		nc|ENSG00000181827|Q2KHR2-1|RFX7;ENSG00000181827|ENST00000559447|RFX7	nc|ENSG00000181827|Q2KHR2-1|RFX7	nc|ENSG00000181827|Q2KHR2-1|RFX7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.8050537109375	2	529.236593	1056.45863	0.177	9.3674E-05	-2.071	-0.001096	-1.894	-0.0010024	529.7374791662504	48.743	0.42332	48.819	48.533	48.956	0.076607					20	13	2	0	0	0	0.25579	1	9728	9728		4.3292	0.38484	1	88288			13651	4849	8999	9095	18542	18542					-0.06733871453798201
MTTEEWSKL	9	Unmodified	_MTTEEWSKL_					0	0	0			REV__ENST00000579356.1_1_18:20303550-20334572:-|nuORF	REV__ENST00000579356.1_1_18:20303550-20334572:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7952880859375	2	562.768257	1123.52196	0.052376	2.9475E-05	1.8443	0.0010379	1.8967	0.0010674	563.2710175645555	39.49	0.14894	39.49	39.347	39.496	0					7	5	2	0	0	0	0.25458	1	7103	7103		5.7319	0.43497	1	48822	+		13652	12547	9000	9096	18543	18543					-0.034859307365422865
MTTSLMTVP	9	Unmodified	_MTTSLMTVP_					0	0	0		ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2872619628906	2	490.743196	979.471839	-0.16733	-8.2114E-05	0.30009	0.00014727	0.13277	6.5155E-05	490.74328256403857	28.659	0.38649	28.659	28.529	28.915	0					24	18	2	0	0	0	0.25644	1	3894	3894		3.9444	1.6417	1	31501			13653	5663	9001	9097	18544	18544					-0.018717566660484408
MTTYLEFI	8	Unmodified	_MTTYLEFI_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.818359375	2	509.251711	1016.48887	0.56546	0.00028796	2.3904	0.0012173	2.9559	0.0015053	509.25168930516804	70.676	0.41159	70.736	70.453	70.864	0.060562					24	16	2	0	0	0	0.35492	1	16478	16478		16.942	2.3606	1	108430			13654	1224	9002	9098	18545	18545					-0.018715127885911897
MVDFYSPW	8	Unmodified	_MVDFYSPW_					0	0	0		ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2929077148438	2	522.728403	1043.44225	-0.16729	-8.7448E-05	-0.86811	-0.00045379	-1.0354	-0.00054124	522.7278563326404	30.05	0.50545	30.125	29.96	30.466	0.075403					46	31	2	0	0	0	0.35759	1	4274	4274		9.3474	1.4373	1	22073			13655	855	9003	9099	18546	18546					-0.07772952619893658
MVDFYSPW	8	Unmodified	_MVDFYSPW_					0	0	0		ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	522.728403	1043.44225	-0.1349	-7.0516E-05	-1.3931	-0.00072821	-1.528	-0.00079872	522.7278892170856	30.088	0.45924	30.088	29.923	30.382	0	-0.018481	-0.00037005	NaN	9.3474	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28763			13656	855	9003	9099							-0.07772952619893658
MVDGKPVNL	9	Oxidation (M)	_M(Oxidation (M))VDGKPVNL_		M(1)VDGKPVNL		M(44)VDGKPVNL	0	0	1		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7603454589844	2	494.760235	987.505917	0.37454	0.00018531	-0.20675	-0.00010229	0.16779	8.3016E-05	494.7600823185428	36.857	0.97213	36.857	36.522	37.494	0					89	37	3	0	0	0	0.048027	1	6353	6353		43.772	21.036	1	149930			13657	2779	9004	9100	18547	18547		180			0.011664078172202608
MVDGKPVNL	9	Unmodified	_MVDGKPVNL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.76226806640625	2	486.762778	971.511002	-0.56452	-0.00027479	0.88261	0.00042962	0.31809	0.00015483	486.7632538061008	40.882	0.54027	40.882	40.656	41.197	0					38	19	3	0	0	0	0.15282	1	7581	7581		24.021	8.1734	1	119070			13658	2779	9004	9101	18548	18548					0.024107116798290917
MVDGKPVNL	9	Unmodified	_MVDGKPVNL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7622375488281	2	486.762778	971.511002	-0.41247	-0.00020077	0.88476	0.00043067	0.47229	0.00022989	486.76324123855045	40.793	0.88139	40.882	40.594	41.475	0.089642					43	32	2	0	0	0	0.26684	1	7434	7434		10.824	2.9138	1	118760			13659	2779	9004	9101	18549	18549					0.024107116798290917
MVDWADWY	8	Unmodified	_MVDWADWY_					0	0	0			REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF	REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2239379882812	2	543.223485	1084.43242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.243	1	22.345	21.845	22.845	0.10178								0	0	0	0.38822	1	1972	1972		0.69038	0	1		+		13660	9370	9005	9102	18550	18550					-0.10642140625259344
MVEELEKAL	9	Oxidation (M)	_M(Oxidation (M))VEELEKAL_		M(1)VEELEKAL		M(57)VEELEKAL	0	0	1		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7927856445312	2	539.278457	1076.54236	0.41213	0.00022225	-0.53036	-0.00028601	-0.11823	-6.3759E-05	539.2782225547348	47.733	0.75956	47.733	47.4	48.159	0					55	25	3	0	0	0	0.02143	2	9653	9608;9653		57.249	27.409	1	240220			13661	683	9006	9103	18551;18552	18552		36			0.0071523992323818675
MVEELEKAL	9	Oxidation (M)	_M(Oxidation (M))VEELEKAL_		M(1)VEELEKAL		M(46)VEELEKAL	0	0	1		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7798461914062	2	539.278457	1076.54236	0.23671	0.00012765	-0.33926	-0.00018296	-0.10255	-5.5306E-05	539.2779825529132	49.269	1.3465	49.269	48.888	50.234	0					103	47	4	0	0	0	0.1076	1	10095	10095		45.74	23.004	1	203970			13662	683	9006	9103	18553	18553		36			0.0071523992323818675
MVEELEKAL	9	Oxidation (M)	_M(Oxidation (M))VEELEKAL_		M(1)VEELEKAL		M(57)VEELEKAL	0	0	1		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7922973632812	2	539.278457	1076.54236	0.68548	0.00036966	-0.68813	-0.0003711	-0.0026568	-1.4327E-06	539.2780429493499	47.667	0.62846	47.748	47.458	48.087	0.080032					51	24	3	0	0	0	0.02143	1	9493	9493		57.249	27.409	1	175240			13663	683	9006	9103	18554	18554		36			0.0071523992323818675
MVEELEKAL	9	Oxidation (M)	_M(Oxidation (M))VEELEKAL_		M(1)VEELEKAL		M(65)VEELEKAL	0	0	1		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2783203125	2	539.278457	1076.54236	0.29003	0.00015641	-0.49894	-0.00026907	-0.20891	-0.00011266	539.2778165417227	49.183	1.0626	49.26	48.981	50.043	0.076607					81	38	4	0	0	0	0.010553	1	9952	9952		65.474	31.072	1	189540			13664	683	9006	9103	18555	18555		36			0.0071523992323818675
MVEELEKAL	9	Unmodified	_MVEELEKAL_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.28125	2	531.281	1060.54745	0.39799	0.00021144	0.46276	0.00024585	0.86074	0.0004573	531.2811888299286	55.947	0.4409	55.947	55.749	56.19	0					34	15	3	0	0	0	0.02143	2	12108	12108;12161		57.249	22.847	1	288470			13665	683	9006	9104	18556;18557	18556					0.01959543785869755
MVEELEKAL	9	Unmodified	_MVEELEKAL_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.281494140625	2	531.281	1060.54745	0.38818	0.00020623	0.45808	0.00024337	0.84626	0.0004496	531.2811580878044	55.879	0.39115	55.944	55.73	56.121	0.065128					28	13	3	0	0	0	0.020468	1	11962	11962		74.2	32.36	1	305780			13666	683	9006	9104	18558	18558					0.01959543785869755
MVERFQDEF	9	Unmodified	_MVERFQDEF_					0	0	0		tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.7702026367188	2	600.771331	1199.52811	0.59386	0.00035678	-1.7478	-0.00105	-1.1539	-0.00069323	600.7694660248501	63.979	0.84441	63.979	63.819	64.664	0					61	29	4	0	0	0	0.23216	1	14569	14569		14.838	4.0143	1	559600			13667	13608	9007	9105	18559	18559					-0.06367412505028369
MVERFQDEF	9	Unmodified	_MVERFQDEF_					0	0	0		tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.7698974609375	2	600.771331	1199.52811	0.50256	0.00030193	-1.9353	-0.0011627	-1.4327	-0.00086073	600.7695016618932	63.919	0.77654	63.99	63.732	64.508	0.071018					56	26	3	0	0	0	0.23216	1	14405	14405		14.838	1.7958	1	570910			13668	13608	9007	9105	18560	18560					-0.06367412505028369
MVESKVGQDS	10	Unmodified	_MVESKVGQDS_					0	0	0		nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	nc|ENSG00000158560|O14576-4|DYNC1I1	nc|ENSG00000158560|O14576-4|DYNC1I1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2761840820312	2	540.255514	1078.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.365	1	80.365	79.865	80.865	0								0	0	0	0.32595	1	19575	19575		14.405	2.9107	1				13669	3698	9008	9106	18561	18561					-0.03963405258969033
MVETHDPIL	9	Oxidation (M)	_M(Oxidation (M))VETHDPIL_		M(1)VETHDPIL		M(71)VETHDPIL	0	0	1		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.N1017Mfs*20|1|0.19|ENSG00000067369|chr15:43441559-43441559|T/-|frameshift_variant;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7626342773438	2	535.762975	1069.5114	-0.068528	-3.6715E-05	-0.13936	-7.4666E-05	-0.20789	-0.00011138	535.7629014372442	43.446	2.556	43.446	42.974	45.53	0					171	90	3	0	0	0	0.0087214	1	8314	8314		71.134	31.176	1	464260			13670	714	9009	9107	18562	18562		39			-0.020579133909905067
MVETHDPIL	9	Oxidation (M)	_M(Oxidation (M))VETHDPIL_					0	0	1		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.N1017Mfs*20|1|0.19|ENSG00000067369|chr15:43441559-43441559|T/-|frameshift_variant;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	535.762975	1069.5114	0.2109	0.000113	-0.22319	-0.00011958	-0.012289	-6.5842E-06	535.7628817935506	43.314	1.2671	43.404	42.98	44.247	0.089764	-0.021065	-3.7795E-05	NaN	71.134	114	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350750			13671	714	9009	9107				39			-0.020579133909905067
MVFDPWLI	8	Unmodified	_MVFDPWLI_					0	0	0		nc|ENSG00000168405|Q9Y471-4|CMAHP;nc|ENSG00000168405|Q9Y471|CMAHP	nc|ENSG00000168405|Q9Y471-4|CMAHP	nc|ENSG00000168405|Q9Y471-4|CMAHP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7845764160156	2	510.764789	1019.51502	0.7794	0.00039809	2.7018	0.00138	3.4812	0.0017781	510.76625529440366	84.748	0.47072	84.748	84.544	85.014	0					30	21	2	0	0	0	0.35713	1	20981	20981		14.582	1.0738	1	151750			13672	7555	9010	9108	18563	18563					0.006048011735515502
MVFSFIWEF	9	Unmodified	_MVFSFIWEF_					0	0	0		ENST00000454389.5_2_3:27433241-27433286:-|nuORF	ENST00000454389.5_2_3:27433241-27433286:-|nuORF	ENST00000454389.5_2_3:27433241-27433286:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.299560546875	2	603.288628	1204.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.349	1	57.349	56.849	57.849	0								0	0	0	0.13043	1	12555	12555		28.487	5.8288	1				13673	6580	9011	9109	18564	18564					-0.031395446262649784
MVGWIDELSL	10	Unmodified	_MVGWIDELSL_					0	0	0			REV__ENST00000521983.1_1_8:26484742-26500445:+|nuORF	REV__ENST00000521983.1_1_8:26484742-26500445:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7935791015625	2	581.794275	1161.574	0.23426	0.00013629	-0.38787	-0.00022566	-0.15362	-8.9374E-05	581.7939959785035	90.387	0.42752	90.421	90.28	90.708	0.034065					20	16	2	0	0	0	0.36006	1	22475	22475		16.149	0.90062	1	133740	+		13674	12300	9012	9110	18565	18565					-0.0003276732277299743
MVHICEPEK	9	Unmodified	_MVHICEPEK_					0	0	0			REV__ENSG00000165868|ENST00000369209|HSPA12A	REV__ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.80224609375	2	543.259545	1084.50454	0.41235	0.00022401	-3.1348	-0.001703	-2.7225	-0.001479	543.7577136682085	71.375	0.1394	71.433	71.378	71.518	0.058578					6	4	2	0	0	0	0.25746	1	16656	16656		3.2813	1.9518	1	46259	+		13675	10050	9013	9111	18566	18566					-0.03433549543206027
MVLIFSKNGS	10	Unmodified	_MVLIFSKNGS_					0	0	0		nc|ENSG00000140527|Q6P2C0-2|WDR93;ENSG00000140527|ENST00000268130|WDR93	nc|ENSG00000140527|Q6P2C0-2|WDR93	nc|ENSG00000140527|Q6P2C0-2|WDR93	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.8234252929688	2	548.296985	1094.57942	0.27779	0.00015231	-0.92487	-0.0005071	-0.64708	-0.00035479	548.2960223008622	49.705	0.589	49.778	49.622	50.211	0.07312					42	20	3	0	0	0	0.31794	1	10204	10204		3.5965	0.31518	1	289940			13676	3018	9014	9112	18567	18567					0.03590956259677114
MVLQYDER	8	Unmodified	_MVLQYDER_					0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2513427734375	2	527.255317	1052.49608	-0.046415	-2.4473E-05	-0.74013	-0.00039024	-0.78654	-0.00041471	527.254758911088	33.694	1.2144	33.694	33.08	34.294	0					124	45	5	0	0	0	0.50159	1	5318	5318		12.532	1.7076	1	632150	+		13677	10332	9015	9113	18568	18568					-0.028067801881888954
MVLQYDER	8	Unmodified	_MVLQYDER_					0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2515869140625	2	527.255317	1052.49608	-0.041646	-2.1958E-05	-0.69276	-0.00036526	-0.7344	-0.00038722	527.2549426474935	33.625	1.2169	33.7	33.117	34.334	0.074322					135	49	4	0	0	0	0.50159	1	5181	5181		12.532	1.7076	1	537070	+		13678	10332	9015	9113	18569	18569					-0.028067801881888954
MVLTCCFY	8	Unmodified	_MVLTCCFY_					0	0	0			REV__ENST00000287474.9_1_1:100214242-100214314:-|nuORF	REV__ENST00000287474.9_1_1:100214242-100214314:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2684631347656	2	490.207935	978.401317	0.32685	0.00016022	0.82231	0.0004031	1.1492	0.00056332	490.20813886581465	78.547	0.23609	78.577	78.476	78.712	0.030159					11	7	2	0	0	0	0.3576	1	18874	18874		5.7604	3.1829	1	90107	+		13679	11310	9016	9114	18570	18570					-0.08874753255372525
MVNRYWEL	8	Unmodified	_MVNRYWEL_					0	0	0			REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.278564453125	2	555.773677	1109.5328	0.74644	0.00041485	2.9706	0.001651	3.717	0.0020658	556.2776062593105	100	1.097	100.04	99.769	100.87	0.042839					154	63	4	0	0	0	0.37883	3	25377	25377;25413;25475		28.487	3.8998	1	734610	+		13680	10568	9017	9115	18571;18572;18573	18571					-0.017584835716206726
MVPKDLEIT	9	Unmodified	_MVPKDLEIT_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7974853515625	2	523.283543	1044.55253	0.18238	9.5436E-05	-0.0063074	-3.3006E-06	0.17607	9.2135E-05	523.2834742525008	51.622	0.46576	51.692	51.475	51.941	0.069878					33	16	3	0	0	0	0.25052	1	10701	10701		8.7454	8.7454	1	368750	+		13681	8023	9018	9116	18574	18574					0.03203847648478586
MVPWPLVL	8	Unmodified	_MVPWPLVL_					0	0	0		ENSG00000102934|ENST00000219207|PLLP	ENSG00000102934|ENST00000219207|PLLP	ENSG00000102934|ENST00000219207|PLLP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.77880859375	2	477.777699	953.540846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.177	1	76.177	75.677	76.677	0								0	0	0	0.38643	1	18296	18296		17.087	5.4463	1				13682	1340	9019	9117	18575	18575					0.06221695415808881
MVSCWGLVLA	10	Unmodified	_MVSCWGLVLA_					0	0	0			REV__ENSG00000127412|ENST00000265310|TRPV5	REV__ENSG00000127412|ENST00000265310|TRPV5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8291625976562	2	539.774831	1077.53511	0.4346	0.00023459	3.7577	0.0020283	4.1923	0.0022629	540.2777915671624	50.556	0.35683	50.63	50.5	50.857	0.07312					19	12	2	0	0	0	0.31585	1	10375	10375		10.824	0	1	31584	+		13683	8997	9020	9118	18576	18576					-0.0005577115814503486
MVSDEYEQL	9	Oxidation (M)	_M(Oxidation (M))VSDEYEQL_		M(1)VSDEYEQL		M(110)VSDEYEQL	0	0	1		ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.23974609375	2	565.239529	1128.46451	0.13737	7.7644E-05	0.20035	0.00011325	0.33772	0.00019089	565.2396203079829	50.56	0.62861	50.56	50.294	50.922	0					74	21	4	0	0	0	0.0021834	3	10451	10451;10500;10552		114.65	68.628	1	2070300			13684	3325	9021	9119	18577;18578;18579	18577		215			-0.0945881773277506
MVSDEYEQL	9	Oxidation (M)	_M(Oxidation (M))VSDEYEQL_		M(1)VSDEYEQL		M(110)VSDEYEQL	0	0	1		ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2396240234375	2	565.239529	1128.46451	0.12277	6.9393E-05	0.18087	0.00010223	0.30364	0.00017163	565.2395929170956	51.221	2.5017	51.221	50.886	53.388	0					191	89	4	0	0	0	0.0034419	6	10650	10603;10650;10696;10739;10783;10831		106.94	60.919	1	2132200			13685	3325	9021	9119	18580;18581;18582;18583;18584;18585	18581		215			-0.0945881773277506
MVSDEYEQL	9	Oxidation (M)	_M(Oxidation (M))VSDEYEQL_		M(1)VSDEYEQL		M(110)VSDEYEQL	0	0	1		ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2402954101562	2	565.239529	1128.46451	0.26111	0.00014759	0.083242	4.7052E-05	0.34435	0.00019464	565.2395414412894	50.504	0.64462	50.577	50.319	50.964	0.07312					75	22	4	0	0	0	0.0034419	4	10292	10292;10339;10381;10424		106.94	60.919	1	1714600			13686	3325	9021	9119	18586;18587;18588;18589	18586		215			-0.0945881773277506
MVSDEYEQL	9	Oxidation (M)	_M(Oxidation (M))VSDEYEQL_		M(1)VSDEYEQL		M(120)VSDEYEQL	0	0	1		ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2396850585938	2	565.239529	1128.46451	0.24848	0.00014045	0.020076	1.1348E-05	0.26856	0.0001518	565.2394984148975	51.158	1.5614	51.228	50.854	52.415	0.069878					162	60	5	0	0	0	0.0016252	5	10561	10465;10513;10561;10606;10656		118.07	63.295	1	1781300			13687	3325	9021	9119	18590;18591;18592;18593;18594	18592		215			-0.0945881773277506
MVSDEYEQL	9	Unmodified	_MVSDEYEQL_					0	0	0		ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2420043945312	2	557.242072	1112.46959	0.69357	0.00038649	-0.23189	-0.00012922	0.46168	0.00025727	557.241610270875	54.958	0.92699	54.958	54.735	55.662	0					79	33	4	0	0	0	0.00041987	3	11847	11797;11847;11896		133.05	58.123	1	732820			13688	3325	9021	9120	18595;18596;18597	18596					-0.08214513870143492
MVSDEYEQL	9	Unmodified	_MVSDEYEQL_					0	0	0		ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000482732.1_1_X:153627802-153628024:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2421875	2	557.242072	1112.46959	0.79571	0.0004434	-0.27829	-0.00015507	0.51742	0.00028833	557.2416821002645	54.93	0.73302	54.995	54.758	55.491	0.065128					83	29	5	0	0	0	0.0034419	3	11688	11642;11688;11739		106.94	54.672	1	731020			13689	3325	9021	9120	18598;18599;18600	18599					-0.08214513870143492
MVTRCNNV	8	Unmodified	_MVTRCNNV_					0	0	0		nc|ENSG00000243480|P04746-2|AMY2A;nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8	nc|ENSG00000243480|P04746-2|AMY2A	nc|ENSG00000243480|P04746-2|AMY2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7232971191406	2	468.723129	935.431706	0.52768	0.00024734	-0.27918	-0.00013086	0.2485	0.00011648	468.7229501170639	65.228	1.0152	65.228	64.973	65.988	0					60	36	3	0	0	0	0.53817	1	15128	15128		2.5775	2.5775	1	287480		+	13690	231	9022	9121	18601	18601					-0.03859258545969624
MVTRCNNV	8	Unmodified	_MVTRCNNV_					0	0	0		nc|ENSG00000243480|P04746-2|AMY2A;nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8	nc|ENSG00000243480|P04746-2|AMY2A	nc|ENSG00000243480|P04746-2|AMY2A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	468.723129	935.431706	0.52768	0.00024734	-0.27918	-0.00013086	0.2485	0.00011648	468.7229501170639	65.228	1.0152	65.228	64.973	65.988	0	-0.0012564	-0.000272	NaN	2.5775	60	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287480		+	13691	231	9022	9121							-0.03859258545969624
MVTRCNNV	8	Unmodified	_MVTRCNNV_					0	0	0		nc|ENSG00000243480|P04746-2|AMY2A;nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8	nc|ENSG00000243480|P04746-2|AMY2A	nc|ENSG00000243480|P04746-2|AMY2A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.723129	935.431706	0.22095	0.00010357	0.52092	0.00024417	0.74187	0.00034773	468.72313264329415	65.162	0.80168	65.231	64.959	65.761	0.068916	0.0012564	0.00047804	NaN	2.5775	53	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406820		+	13692	231	9022	9121							-0.03859258545969624
MVTSLEESL	9	Oxidation (M)	_M(Oxidation (M))VTSLEESL_		M(1)VTSLEESL		M(89)VTSLEESL	0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7462768554688	2	512.74699	1023.47943	0.43854	0.00022486	-0.87715	-0.00044975	-0.43861	-0.00022489	512.7466799348291	57.345	0.57964	57.345	57.16	57.74	0					46	20	3	0	0	0	0.0045547	2	12532	12532;12582		88.904	54.801	1	181520			13693	559	9023	9122	18602;18603	18602		28			-0.03137325864770446
MVTSLEESL	9	Oxidation (M)	_M(Oxidation (M))VTSLEESL_		M(1)VTSLEESL		M(61)VTSLEESL	0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7463989257812	2	512.74699	1023.47943	0.0078093	4.0042E-06	-0.73914	-0.00037899	-0.73133	-0.00037499	512.7464928152297	58.468	0.58926	58.468	58.256	58.846	0					49	21	3	0	0	0	0.015682	1	12875	12875		61.357	32.871	1	166980			13694	559	9023	9122	18604	18604		28			-0.03137325864770446
MVTSLEESL	9	Oxidation (M)	_M(Oxidation (M))VTSLEESL_		M(1)VTSLEESL		M(55)VTSLEESL	0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7471313476562	2	512.74699	1023.47943	0.41815	0.0002144	-0.39223	-0.00020112	0.025913	1.3287E-05	512.7467820110176	57.299	0.48777	57.367	57.181	57.669	0.068375					32	18	2	0	0	0	0.024893	1	12423	12423		54.774	26.287	1	215310			13695	559	9023	9122	18605	18605		28			-0.03137325864770446
MVVDIVQEL	9	Oxidation (M)	_M(Oxidation (M))VVDIVQEL_		M(1)VVDIVQEL		M(42)VVDIVQEL	0	0	1		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2811889648438	2	531.281	1060.54745	0.41994	0.0002231	0.62286	0.00033091	1.0428	0.00055402	531.2812970043022	74.603	0.51344	74.603	74.31	74.823	0					31	18	3	0	0	0	0.056368	1	17829	17829		41.956	14.327	1	218070			13696	3752	9024	9123	18606	18606		231			0.019595437858924925
MVVDIVQEL	9	Oxidation (M)	_M(Oxidation (M))VVDIVQEL_					0	0	1		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	531.281	1060.54745	0.50192	0.00026666	0.13374	7.1053E-05	0.63566	0.00033771	531.2809794920963	74.532	0.47551	74.58	74.396	74.872	0.048546	-0.011472	-0.00021031	NaN	41.956	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264500			13697	3752	9024	9123				231			0.019595437858924925
MVVDIVQEL	9	Unmodified	_MVVDIVQEL_					0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.303466796875	2	523.283543	1044.55253	0.7807	0.00040852	-1.9852	-0.0010388	-1.2045	-0.00063031	523.2829141039124	81.551	0.89294	81.551	81.087	81.98	0					51	30	3	0	0	0	0.15837	1	19949	19949		34.932	12.196	1	156310			13698	3752	9024	9124	18607	18607					0.032038476485013234
MVVGKEKHGR	10	Unmodified	_MVVGKEKHGR_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8184204101562	2	570.81895	1139.62335	0.28543	0.00016293	-1.0924	-0.00062357	-0.80697	-0.00046064	570.818360435814	37.646	0.33177	37.731	37.57	37.901	0.084476					12	10	2	0	0	0	0.46827	1	6439	6439		1.3295	0.63916	1	25203	+		13699	8186	9025	9125	18608	18608					0.05911985476677728
MVVKIIDVL	9	Unmodified	_MVVKIIDVL_					0	0	0		LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant;ENSG00000174106|ENST00000308330|LEMD3	LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant	LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7416381835938	2	515.322471	1028.63039	0.18462	9.514E-05	0.4364	0.00022489	0.62102	0.00032002	515.3227765036022	72.45	0.25237	72.506	72.374	72.627	0.055939					10	8	2	0	0	0	0.2553	1	17019	17019		5.2969	2.0156	1	95317			13700	4565	9026	9126	18609	18609					0.1172190530453463
MVVMPSLTPF	10	Unmodified	_MVVMPSLTPF_					0	0	0			REV__ENSG00000198894|ENST00000361786|CIPC	REV__ENSG00000198894|ENST00000361786|CIPC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8296508789062	2	561.290314	1120.56607	0.71946	0.00040383	4.0868	0.0022939	4.8063	0.0026977	561.2924492485589	80.92	0.60478	80.943	80.652	81.257	0.023605					30	20	2	0	0	0	0.31456	1	19591	19591		14.838	1.3304	1	97076	+		13701	10924	9027	9127	18610	18610					0.01061382156080981
MVYKKVKKA	9	Unmodified	_MVYKKVKKA_					0	0	0		tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8435668945312	2	547.841362	1093.66817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.6	1	13.6	13.1	14.1	0								0	0	0	0.29233	1	240	240		0.6015	0.6015	1				13702	13622	9028	9128	18611	18611					0.12508416290006608
MWCIVLFS	8	Unmodified	_MWCIVLFS_					0	0	0		ENST00000543187.5_1_12:7168132-7170034:+|nuORF;ENST00000488701.1_1_12:7168132-7170034:+|nuORF;ENSG00000182326|ENST00000360817|C1S	ENST00000543187.5_1_12:7168132-7170034:+|nuORF	ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.77386474609375	2	499.745542	997.476531	0.63912	0.0003194	-1.4961	-0.00074766	-0.85696	-0.00042826	499.74492181233876	70.658	0.39257	70.719	70.577	70.969	0.060562					21	15	2	0	0	0	0.35759	1	16526	16526		9.3474	0	1	118520			13703	4871	9029	9129	18612	18612					-0.022308277326374082
MWDRCFNI	8	Unmodified	_MWDRCFNI_					0	0	0		ENST00000607092.1_1_7:101459320-101559506:+|nuORF;ENST00000547394.6_1_7:101459320-101713628:+|nuORF;ENST00000437600.8_1_7:101459221-101671393:+|nuORF	ENST00000607092.1_1_7:101459320-101559506:+|nuORF	ENST00000607092.1_1_7:101459320-101559506:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7386474609375	2	542.73878	1083.46301	0.32775	0.00017788	-0.59008	-0.00032026	-0.26234	-0.00014238	542.7383470810908	58.082	0.92487	58.152	57.853	58.778	0.070477					65	33	3	0	0	0	0.42348	2	12592	12592;12689		23.148	23.148	1	631650			13704	6511	9030	9130	18613;18614	18613					-0.07538685511872245
MWFERSFS	8	Unmodified	_MWFERSFS_					0	0	0			REV__ENST00000375740.7_1_6:31709024-31710713:+|nuORF	REV__ENST00000375740.7_1_6:31709024-31710713:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2450561523438	2	545.244752	1088.47495	0.33375	0.00018198	0.93026	0.00050722	1.264	0.00068919	545.2450643677632	94.905	0.50888	94.905	94.685	95.194	0					42	20	3	0	0	0	0.53926	1	23986	23986		1.8442	0	1	189140	+		13705	11637	9031	9131	18615	18615					-0.06574745497027834
MWKVNVRK	8	Unmodified	_MWKVNVRK_					0	0	0		ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8096923828125	2	530.807854	1059.60115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.162	1	18.251	17.751	18.751	0.089705								0	0	0	0.38822	1	998	998		0.69038	0	1				13706	2047	9032	9132	18616	18616					0.0737380579892033
MWKVSALLF	9	Unmodified	_MWKVSALLF_					0	0	0		ENSG00000162493|ENST00000621990|PDPN;nc|ENSG00000162493|Q86YL7-4|PDPN;nc|ENSG00000162493|Q86YL7-3|PDPN	ENSG00000162493|ENST00000621990|PDPN	ENSG00000162493|ENST00000621990|PDPN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7745361328125	2	547.806988	1093.59942	0.6474	0.00035465	-0.94105	-0.00051551	-0.29365	-0.00016086	547.8064702448974	79.736	0.25259	79.736	79.562	79.815	0					12	8	2	0	0	0	0.23478	1	19359	19359		17.113	4.5813	1	65108			13707	3830	9033	9133	18617	18617					0.05636751990277844
MWRLLGDCY	9	Unmodified	_MWRLLGDCY_					0	0	0		ENST00000392825.7_1_2:155157929-155158067:+|nuORF	ENST00000392825.7_1_2:155157929-155158067:+|nuORF	ENST00000392825.7_1_2:155157929-155158067:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7854614257812	2	578.767537	1155.52052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.488	1	49.564	49.064	50.064	0.076607								0	0	0	0.2428	1	10026	10026		10.824	2.9138	1				13708	6317	9034	9134	18618	18618					-0.051018433062836266
MWSLTDEF	8	Unmodified	_MWSLTDEF_					0	0	0			REV__ENSG00000095209|ENST00000374692|TMEM38B	REV__ENSG00000095209|ENST00000374692|TMEM38B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7750854492188	2	514.723318	1027.43208	0.59878	0.00030821	-2.031	-0.0010454	-1.4322	-0.00073718	515.2239286514324	97.885	0.10955	97.926	97.848	97.957	0.040855					5	4	2	0	0	0	0.3576	1	24732	24732		5.7604	0	1	20510	+		13709	8340	9035	9135	18619	18619					-0.08053560345115329
MWSTIDDSQI	10	Unmodified	_MWSTIDDSQI_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.6588134765625	2	598.268621	1194.52269	0.50859	0.00030427	-0.39739	-0.00023775	0.11119	6.6522E-05	598.2687081202273	66.364	0.59719	66.431	66.055	66.652	0.066872					37	22	2	0	0	0	0.39662	1	15162	15162		12.241	0	1	102890			13710	3882	9036	9136	18620	18620					-0.06679136087495863
MWWESLLF	8	Unmodified	_MWWESLLF_					0	0	0		SLC24A2|p.L269F|1|0.27|ENSG00000155886|chr9:19786062-19786062|G/A|missense_variant	SLC24A2|p.L269F|1|0.27|ENSG00000155886|chr9:19786062-19786062|G/A|missense_variant	SLC24A2|p.L269F|1|0.27|ENSG00000155886|chr9:19786062-19786062|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2880859375	2	556.267696	1110.52084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.585	1	73.638	73.138	74.138	0.052574								0	0	0	0.38822	1	17346	17346		10.183	2.2732	1				13711	13364	9037	9137	18621	18621					-0.030001003148072414
MWYPHFVI	8	Unmodified	_MWYPHFVI_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7694702148438	2	546.770406	1091.52626	-0.088567	-4.8426E-05	-0.66197	-0.00036195	-0.75054	-0.00041037	546.7697345927421	31.235	0.97579	31.235	31.001	31.977	0					99	44	3	0	0	0	0.53771	1	4773	4773		2.8892	0.58649	1	151960	+		13712	8329	9038	9138	18622	18622					-0.015843767323303837
MWYPHFVI	8	Unmodified	_MWYPHFVI_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.769775390625	2	546.770406	1091.52626	-0.041674	-2.2786E-05	-0.72195	-0.00039474	-0.76363	-0.00041753	546.769713733457	31.21	0.90936	31.284	31.069	31.979	0.073782					106	44	4	0	0	0	0.54081	1	4675	4675		0.79363	0.10326	1	134370	+		13713	8329	9038	9138	18623	18623					-0.015843767323303837
MWYPTGHM	8	Unmodified	_MWYPTGHM_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-7|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-7|MAP3K19	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.75006103515625	2	511.714773	1021.41499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.746	1	26.833	26.333	27.333	0.0867								0	0	0	0.38822	1	3219	3219		0.79363	0.10326	1		+		13714	10408	9039	9139	18624	18624					-0.09485759431902352
MYAEETYPVA	10	Unmodified	_MYAEETYPVA_					0	0	0			REV__ENSG00000186094|ENST00000371839|AGBL4	REV__ENSG00000186094|ENST00000371839|AGBL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.2586059570312	2	587.260265	1172.50598	-0.058346	-3.4264E-05	2.0923	0.0012287	2.0339	0.0011944	587.7640879976512	40.42	0.92315	40.42	40.151	41.075	0					59	32	3	0	0	0	0.41688	1	7418	7418		10.074	3.8681	1	79484	+		13715	10694	9040	9140	18625	18625					-0.07337636973466033
MYCDAYLM	8	Unmodified	_MYCDAYLM_					0	0	0			REV__nc|ENSG00000116133|Q15392-2|DHCR24	REV__nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.71746826171875	2	505.195025	1008.3755	-0.41304	-0.00020866	-2.5242	-0.0012752	-2.9372	-0.0014839	505.1936734815147	40.702	0.25827	40.702	40.623	40.881	0					11	8	2	0	0	0	0.3576	1	7551	7551		0.79363	0	1	25538	+		13716	8804	9041	9141	18626	18626					-0.12835647497649916
MYCDAYLM	8	Unmodified	_MYCDAYLM_					0	0	0			REV__nc|ENSG00000116133|Q15392-2|DHCR24	REV__nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	505.195025	1008.3755	-0.23244	-0.00011743	-2.5154	-0.0012708	-2.7478	-0.0013882	505.19384103327496	40.665	0.20708	40.755	40.594	40.801	0.089645	0.026215	7.0789E-06	NaN	0.79363	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28893	+		13717	8804	9041	9141							-0.12835647497649916
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1983642578125	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.28	1	31.28	30.78	31.78	0								0	0	0	0.38822	1	4677	4677		2.3027	0.4585	1				13718	7417	9042	9142	18627	18627					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1980895996094	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.447	1	31.447	30.947	31.947	0								0	0	0	0.38822	1	4727	4727		2.3027	0.24298	1				13719	7417	9042	9142	18628	18628					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1990966796875	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.597	1	31.597	31.097	32.097	0								0	0	0	0.38822	1	4772	4772		2.3027	0.4585	1				13720	7417	9042	9142	18629	18629					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1985778808594	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.423	1	32.423	31.923	32.923	0								0	0	0	0.38822	1	5017	5017		2.3027	0.4585	1				13721	7417	9042	9142	18630	18630					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.19866943359375	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.115	1	39.115	38.615	39.615	0								0	0	0	0.38822	1	7025	7025		2.3027	0.4585	1				13722	7417	9042	9142	18631	18631					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1983642578125	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.326	1	39.326	38.826	39.826	0								0	0	0	0.38822	1	7089	7089		2.3027	0.4585	1				13723	7417	9042	9142	18632	18632					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1982727050781	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.048	1	40.048	39.548	40.548	0								0	0	0	0.38822	1	7308	7308		2.3027	0.4585	1				13724	7417	9042	9142	18633	18633					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1989440917969	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.241	1	40.241	39.741	40.741	0								0	0	0	0.38822	1	7366	7366		2.3027	0.4585	1				13725	7417	9042	9142	18634	18634					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1983337402344	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.482	1	40.482	39.982	40.982	0								0	0	0	0.38822	1	7437	7437		2.3027	0.4585	1				13726	7417	9042	9142	18635	18635					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1977233886719	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.78	1	40.78	40.28	41.28	0								0	0	0	0.38822	1	7527	7527		2.3027	0.4585	1				13727	7417	9042	9142	18636	18636					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.19818115234375	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.718	1	42.718	42.218	43.218	0								0	0	0	0.38822	1	8114	8114		2.3027	0.4585	1				13728	7417	9042	9142	18637	18637					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1986083984375	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.101	1	43.101	42.601	43.601	0								0	0	0	0.38822	1	8229	8229		2.3027	0.4585	1				13729	7417	9042	9142	18638	18638					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1980895996094	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.311	1	31.385	30.885	31.885	0.073782								0	0	0	0.38822	1	4564	4564		2.3027	1.5091	1				13730	7417	9042	9142	18639	18639					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.197998046875	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.296	1	32.369	31.869	32.869	0.07378								0	0	0	0.38822	1	4858	4858		2.3027	0.4585	1				13731	7417	9042	9142	18640	18640					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.19921875	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.309	1	39.397	38.897	39.897	0.088562								0	0	0	0.38822	1	6958	6958		2.3027	0.4585	1				13732	7417	9042	9142	18641	18641					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.198486328125	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.613	1	39.702	39.202	40.202	0.088562								0	0	0	0.38822	1	7050	7050		2.3027	0.4585	1				13733	7417	9042	9142	18642	18642					-0.09679304039036651
MYDDIAHS	8	Unmodified	_MYDDIAHS_					0	0	0		LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1982116699219	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.688	1	40.778	40.278	41.278	0.089645								0	0	0	0.38822	1	7373	7373		2.3027	1.5091	1				13734	7417	9042	9142	18643	18643					-0.09679304039036651
MYERPSCLY	9	Unmodified	_MYERPSCLY_					0	0	0		ENST00000593197.1_1_19:57021649-57037314:+|nuORF	ENST00000593197.1_1_19:57021649-57037314:+|nuORF	ENST00000593197.1_1_19:57021649-57037314:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2865600585938	2	581.257002	1160.49945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.479	1	86.479	85.979	86.979	0								0	0	0	0.27782	1	21435	21435		3.5965	0.60125	1				13735	7278	9043	9143	18644	18644					-0.07437853405804162
MYFWFLARM	9	Unmodified	_MYFWFLARM_					0	0	0			REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|15	REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.2376403808594	3	422.20504	1263.59329	-0.034671	-1.4638E-05	1.0122	0.00042734	0.97749	0.0004127	422.5397520568403	24.833	0.4312	24.833	24.732	25.164	0					65	31	3	0	0	0	0.25964	1	2774	2774		1.0715	0	1	24747	+		13736	7787	9044	9144	18645	18645					-0.02796089512889921
MYGLFQTSF	9	Oxidation (M)	_M(Oxidation (M))YGLFQTSF_		M(1)YGLFQTSF		M(89)YGLFQTSF	0	0	1		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2522583007812	2	555.252243	1108.48993	0.64102	0.00035593	-0.42752	-0.00023738	0.2135	0.00011855	555.2519548620822	79.362	0.94817	79.362	79.074	80.022	0					75	32	3	0	0	0	0.0045547	2	19272	19272;19323		88.904	50.93	1	406370			13737	853	9045	9145	18646;18647	18646		48			-0.059972984197202095
MYGLFQTSF	9	Oxidation (M)	_M(Oxidation (M))YGLFQTSF_		M(1)YGLFQTSF		M(89)YGLFQTSF	0	0	1		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.252197265625	2	555.252243	1108.48993	0.4869	0.00027035	-0.82726	-0.00045934	-0.34036	-0.00018899	555.2521040378917	79.325	1.064	79.351	79.042	80.106	0.026428					79	37	4	0	0	0	0.0045547	2	19100	19100;19158		88.904	48.946	1	458450			13738	853	9045	9145	18648;18649	18648		48			-0.059972984197202095
MYGLFQTSF	9	Unmodified	_MYGLFQTSF_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7753295898438	2	547.254785	1092.49502	0.71647	0.00039209	-0.62414	-0.00034156	0.092327	5.0526E-05	547.2544531297716	84.132	0.31491	84.132	83.9	84.215	0					16	10	2	0	0	0	0.073377	1	20727	20727		52.268	32.829	1	91188			13739	853	9045	9146	18650	18650					-0.04752994557088641
MYGLFQTSF	9	Unmodified	_MYGLFQTSF_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.775390625	2	547.254785	1092.49502	0.41569	0.00022749	0.34199	0.00018715	0.75767	0.00041464	547.2548251844244	84.105	0.34732	84.127	83.948	84.295	0.021744					19	12	2	0	0	0	0.17305	1	20556	20556		31.268	14.155	1	124610			13740	853	9045	9146	18651	18651					-0.04752994557088641
MYHLFQLKR	9	Unmodified	_MYHLFQLKR_					0	0	0		nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000070182|P11277-3|SPTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3407592773438	2	618.339518	1234.66448	-0.58993	-0.00036478	2.3418	0.001448	1.7518	0.0010832	618.3409180099425	31.788	0.22042	31.788	31.676	31.897	0					13	8	2	0	0	0	0.34646	1	4839	4839		0.6015	0.076735	1	16425			13741	756	9046	9147	18652	18652					0.056537465161227374
MYHLFSCIVS	10	Unmodified	_MYHLFSCIVS_					0	0	0			REV__ENSG00000102302|ENST00000375135|FGD1	REV__ENSG00000102302|ENST00000375135|FGD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3023071289062	2	600.28302	1198.55149	0.45008	0.00027017	2.0572	0.0012349	2.5073	0.0015051	600.2839706117	67.768	1.1274	67.768	67.46	68.587	0					84	41	3	0	0	0	0.45443	1	15970	15970		3.9444	0.3479	1	501420	+		13742	8449	9047	9148	18653	18653					-0.039846899920576107
MYIARQLSF	9	Oxidation (M)	_M(Oxidation (M))YIARQLSF_		M(1)YIARQLSF		M(46)YIARQLSF	0	0	1		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000139697|A3KN83-4|SBNO1	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7958984375	2	572.794609	1143.57467	0.58842	0.00033704	0.10694	6.1257E-05	0.69536	0.0003983	572.7945062726267	54.549	0.89621	54.549	53.931	54.827	0					58	37	2	0	0	0	0.03918	1	11720	11720		45.7	25.246	1	176920			13743	671;2981	9048	9149	18654	18654		35			0.008620721169108947
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_		M(1)YIIPVVLF		M(56)YIIPVVLF	0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8170776367188	2	555.817021	1109.61949	0.47822	0.0002658	-0.15181	-8.4379E-05	0.32641	0.00018142	555.8168210223301	101.77	0.92693	101.77	101.43	102.36	0					176	66	4	0	0	0	0.02311	3	26056	26056;26094;26135		56.048	35.177	1	1315200			13744	3797	9049	9150	18655;18656;18657	18655		235			0.06906502930246461
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_		M(1)YIIPVVLF		M(67)YIIPVVLF	0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.817138671875	2	555.817021	1109.61949	0.39078	0.0002172	-0.083552	-4.6439E-05	0.30723	0.00017076	555.8169393162331	102.92	2.0438	102.92	102.36	104.4	0					424	172	4	0	0	0	0.0099253	8	26457	26334;26373;26418;26457;26493;26529;26571;26767		67.413	46.542	1	1829300			13745	3797	9049	9150	18658;18659;18660;18661;18662;18663;18664;18665	18661		235			0.06906502930246461
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_		M(1)YIIPVVLF		M(80)YIIPVVLF	0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.817138671875	2	555.817021	1109.61949	0.65563	0.00036441	-0.27966	-0.00015544	0.37597	0.00020897	555.816797463313	102.79	1.3947	102.83	102.31	103.7	0.040916					351	124	4	0	0	0	0.0058736	8	26256	26180;26217;26256;26292;26327;26363;26408;26479		79.935	56.786	1	1686000			13746	3797	9049	9150	18666;18667;18668;18669;18670;18671;18672;18673	18668		235			0.06906502930246461
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_					0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	555.817021	1109.61949	0.69167	0.00038444	-0.44748	-0.00024872	0.24419	0.00013573	555.8166810074877	101.79	0.98028	101.84	101.43	102.41	0.042656	0.035422	-0.00014628	NaN	56.048	233	79	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1033100			13747	3797	9049	9150				235			0.06906502930246461
MYIRYLYKL	9	Unmodified	_MYIRYLYKL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	nc|ENSG00000150760|Q14185|DOCK1;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5702819824219	3	421.570377	1261.6893	0.43061	0.00018153	-0.32134	-0.00013547	0.10928	4.6067E-05	421.5701323025032	58.11	0.36229	58.11	57.855	58.217	0					33	12	3	0	0	0	0.2546	1	12764	12764		12.241	5.6103	1	139190			13748	3437;2674	9050	9151	18674	18674					0.06892381598868269
MYIRYLYKL	9	Unmodified	_MYIRYLYKL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	nc|ENSG00000150760|Q14185|DOCK1;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5702819824219	3	421.570377	1261.6893	0.11432	4.8193E-05	-0.063872	-2.6927E-05	0.050445	2.1266E-05	421.5703602683368	57.956	0.28276	58.024	57.851	58.134	0.068375					18	10	2	0	0	0	0.24533	1	12601	12601		12.241	5.6103	1	132130			13749	3437;2674	9050	9151	18675	18675					0.06892381598868269
MYKAEDEFA	9	Unmodified	_MYKAEDEFA_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2578125	2	552.239332	1102.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.734	1	77.768	77.268	78.268	0.034485								0	0	0	0.14119	1	18614	18614		26.884	6.43	1		+		13750	9733	9051	9152	18676	18676					-0.08302192661972185
MYLFSAAASW	10	Unmodified	_MYLFSAAASW_					0	0	0		nc|ENSG00000056586|Q9HBD1-4|RC3H2;nc|ENSG00000056586|Q9HBD1-6|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7646484375	2	573.76806	1145.52157	0.19876	0.00011404	-3.525	-0.0020225	-3.3262	-0.0019085	573.7645114695398	58.27	0.70695	58.341	58.184	58.891	0.070477					58	24	3	0	0	0	0.38104	1	12706	12706		13.906	0.86358	1	134270			13751	7455	9052	9153	18677	18677					-0.0453730566575814
MYLKQILYL	9	Unmodified	_MYLKQILYL_					0	0	0		ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000256263|A8MPP1|DDX11L8;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;ENST00000543026.5_1_12:31242773-31246356:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.841064453125	2	592.841028	1183.6675	0.28424	0.00016851	-0.55742	-0.00033046	-0.27318	-0.00016195	592.84084700058	74.177	0.6546	74.177	74.006	74.661	0					43	24	3	0	0	0	0.05573	1	17695	17695		42.095	25.152	1	353720			13752	7058	9053	9154	18678	18678					0.08301576850294623
MYLKQILYL	9	Unmodified	_MYLKQILYL_					0	0	0		ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000256263|A8MPP1|DDX11L8;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;ENST00000543026.5_1_12:31242773-31246356:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8406982421875	2	592.841028	1183.6675	0.43287	0.00025662	-0.4014	-0.00023797	0.031473	1.8659E-05	592.8409633648856	74.149	0.60329	74.197	74.016	74.619	0.048546					39	21	3	0	0	0	0.030375	1	17527	17527		50.855	30.401	1	299100			13753	7058	9053	9154	18679	18679					0.08301576850294623
MYLKQILYL	9	Oxidation (M)	_M(Oxidation (M))YLKQILYL_		M(1)YLKQILYL		M(57)YLKQILYL	0	0	1		ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000256263|A8MPP1|DDX11L8;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;ENST00000543026.5_1_12:31242773-31246356:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8386840820312	2	600.838485	1199.66242	0.33219	0.00019959	-0.045024	-2.7052E-05	0.28716	0.00017254	600.8384169497605	69.011	0.63691	69.074	68.531	69.168	0.062126					52	23	3	0	0	0	0.021119	1	15914	15914		57.471	37.057	1	363330			13754	7058	9053	9155	18680	18680		326			0.07057272987685792
MYMGVPIVL	9	Unmodified	_MYMGVPIVL_					0	0	0		tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7734069824219	2	511.774299	1021.53405	0.27159	0.00013899	-1.562	-0.00079937	-1.2904	-0.00066038	511.77342580010225	68.802	0.41798	68.864	68.664	69.082	0.062126					28	15	2	0	0	0	0.23437	1	15934	15934		14.582	2.9414	1	108820			13755	13610	9054	9156	18681	18681					0.02414014472924464
MYPAIFDQL	9	Oxidation (M)	_M(Oxidation (M))YPAIFDQL_		M(1)YPAIFDQL		M(65)YPAIFDQL	0	0	1		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.268310546875	2	557.267893	1112.52123	0.96081	0.00053543	-0.15819	-8.8155E-05	0.80262	0.00044727	557.2678067778937	80.6	0.70365	80.6	80.169	80.873	0					55	24	3	0	0	0	0.01063	2	19621	19621;19667		65.235	30.833	1	240690			13756	653	9055	9157	18682;18683	18682		34			-0.03052725385600752
MYPAIFDQL	9	Oxidation (M)	_M(Oxidation (M))YPAIFDQL_		M(1)YPAIFDQL		M(100)YPAIFDQL	0	0	1		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2686157226562	2	557.267893	1112.52123	0.94683	0.00052764	-0.69364	-0.00038654	0.25319	0.00014109	557.2675515624584	81.216	0.84267	81.216	80.873	81.716	0					73	28	3	0	0	0	0.0042692	1	19822	19822		99.799	57.959	1	453070			13757	653	9055	9157	18684	18684		34			-0.03052725385600752
MYPAIFDQL	9	Oxidation (M)	_M(Oxidation (M))YPAIFDQL_		M(1)YPAIFDQL		M(50)YPAIFDQL	0	0	1		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2681884765625	2	557.267893	1112.52123	0.90371	0.00050361	0.022548	1.2565E-05	0.92625	0.00051617	557.2678043157166	80.548	0.60869	80.572	80.273	80.882	0.023605					43	21	3	0	0	0	0.031665	1	19478	19478		49.933	22.304	1	264990			13758	653	9055	9157	18685	18685		34			-0.03052725385600752
MYPQKTTNLF	10	Unmodified	_MYPQKTTNLF_					0	0	0			REV__ENST00000296802.9_1_5:74072492-74072618:+|nuORF	REV__ENST00000296802.9_1_5:74072492-74072618:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2744140625	2	621.812999	1241.61144	0.02523	1.5688E-05	-2.7084	-0.0016841	-2.6831	-0.0016684	621.8113881751134	67.832	0.73956	67.832	67.669	68.408	0					49	27	2	0	0	0	0.31731	1	15729	15729		6.2058	0	1	213190	+		13759	11327	9056	9158	18686	18686					0.00030323942792165326
MYPQKTTNLF	10	Unmodified	_MYPQKTTNLF_					0	0	0			REV__ENST00000296802.9_1_5:74072492-74072618:+|nuORF	REV__ENST00000296802.9_1_5:74072492-74072618:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.2739868164062	2	621.812999	1241.61144	0.48288	0.00030026	-3.5269	-0.0021931	-3.044	-0.0018928	621.8108027047143	66.911	0.93235	66.976	66.704	67.636	0.065063					60	32	3	0	0	0	0.31616	1	15343	15343		10.074	0	1	249050	+		13760	11327	9056	9158	18687	18687					0.00030323942792165326
MYPRINLFE	9	Unmodified	_MYPRINLFE_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.7828369140625	2	591.802434	1181.59032	0.31494	0.00018638	4.1045	0.0024291	4.4195	0.0026155	591.8045261897474	79.41	0.66151	79.436	79.162	79.823	0.026436					29	23	2	0	0	0	0.24366	1	19099	19099		13.042	3.695	1	85335	+		13761	8068	9057	9159	18688	18688					0.006783586339679459
MYPRSHPRS	9	Unmodified	_MYPRSHPRS_					0	0	0			REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF	REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2797241210938	2	565.779825	1129.5451	-0.10966	-6.2044E-05	-1.4043	-0.00079454	-1.514	-0.00085659	565.7789937116675	31.46	0.41113	31.534	31.346	31.757	0.07378					33	19	2	0	0	0	0.33849	1	4597	4597		1.6526	0.32309	1	30753	+		13762	8398	9058	9160	18689	18689					-0.014494471085754412
MYPRSHPRS	9	Unmodified	_MYPRSHPRS_					0	0	0			REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF	REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	565.779825	1129.5451	-0.10966	-6.2044E-05	-1.4043	-0.00079454	-1.514	-0.00085659	565.7789937116675	31.46	0.41113	31.534	31.346	31.757	0.07378	0.031437	-6.3451E-05	NaN	1.6526	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30753	+		13763	8398	9058	9160							-0.014494471085754412
MYPTAPELLV	10	Unmodified	_MYPTAPELLV_					0	0	0		ENST00000379938.6_3_6:7250695-7251052:+|nuORF	ENST00000379938.6_3_6:7250695-7251052:+|nuORF	ENST00000379938.6_3_6:7250695-7251052:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3157958984375	2	567.299193	1132.58383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.4	1	94.4	93.9	94.9	0								0	0	0	0.33395	1	23842	23842		7.2892	2.0586	1				13764	6282	9059	9161	18690	18690					0.02284420682599375
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(130)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8020629882812	2	599.801903	1197.58925	0.19287	0.00011568	0.13083	7.8469E-05	0.32369	0.00019415	599.8019500160344	73.919	0.69746	73.919	73.446	74.144	0					64	25	3	0	0	0	0.00081117	2	17572	17572;17616		126.6	112.02	1	1849600			13765	569	9060	9162	18691;18692	18691		29			-0.0016385573494517303
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(130)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8026123046875	2	599.801903	1197.58925	0.40022	0.00024005	0.38825	0.00023287	0.78846	0.00047292	599.8021668494148	74.383	1.5356	74.383	74.053	75.589	0					166	57	5	0	0	0	0.00081117	5	17727	17661;17727;17772;17820;17911		126.6	112.02	1	2572600			13766	569	9060	9162	18693;18694;18695;18696;18697	18694		29			-0.0016385573494517303
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(130)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8021850585938	2	599.801903	1197.58925	0.38213	0.0002292	0.18673	0.000112	0.56887	0.00034121	599.8018677457109	73.787	0.80409	73.84	73.379	74.183	0.052574					102	30	5	0	0	0	0.00081117	3	17395	17344;17395;17444		126.6	112.02	1	1762100			13767	569	9060	9162	18698;18699;18700	18699		29			-0.0016385573494517303
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(130)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8018188476562	2	599.801903	1197.58925	0.42899	0.00025731	0.40192	0.00024107	0.8309	0.00049838	599.8021536288644	74.391	1.4546	74.439	73.962	75.417	0.048546					158	52	5	0	0	0	0.00081117	5	17496	17496;17551;17592;17636;17684		126.6	112.02	1	2826000			13768	569	9060	9162	18701;18702;18703;18704;18705	18701		29			-0.0016385573494517303
MYPYIFHVL	9	Unmodified	_MYPYIFHVL_					0	0	0		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.8046264648438	2	591.804445	1181.59434	0.32889	0.00019464	-0.23654	-0.00013999	0.092347	5.4652E-05	591.8044210100816	77.862	1.5509	77.862	77.351	78.901	0					147	55	4	0	0	0	0.02311	2	18873	18873;18925		56.048	49.325	1	1527800			13769	569	9060	9163	18706;18707	18706					0.010804481276863953
MYPYIFHVL	9	Unmodified	_MYPYIFHVL_					0	0	0		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.8047485351562	2	591.804445	1181.59434	0.49647	0.00029382	-0.62603	-0.00037049	-0.12956	-7.6674E-05	591.804353057557	77.671	1.4366	77.705	77.355	78.791	0.034485					157	50	5	0	0	0	0.081567	2	18708	18708;18770		36.466	28.556	1	1587500			13770	569	9060	9163	18708;18709	18708					0.010804481276863953
MYPYIYHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIYHVL_		M(1)YPYIYHVL		M(94)YPYIYHVL	0	0	1		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.7993774414062	2	607.79936	1213.58417	0.78059	0.00047444	-1.0865	-0.00066037	-0.3059	-0.00018592	607.7985785874305	64.651	1.0701	64.651	64.328	65.398	0					71	38	2	0	0	0	0.0044274	3	14790	14689;14740;14790		93.763	86.661	1	382510			13771	4956	9061	9164	18710;18711;18712	18712		288			-0.01408159597554004
MYPYIYHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIYHVL_		M(1)YPYIYHVL		M(46)YPYIYHVL	0	0	1		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7999877929688	2	607.79936	1213.58417	0.72862	0.00044285	1.1361	0.0006905	1.8647	0.0011333	607.7991335238696	64.045	0.64986	64.116	63.859	64.508	0.071014					55	22	4	0	0	0	0.038949	2	14458	14458;14512		45.75	37.84	1	369720			13772	4956	9061	9164	18713;18714	18713		288			-0.01408159597554004
MYPYIYHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIYHVL_		M(1)YPYIYHVL		M(80)YPYIYHVL	0	0	1		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7993774414062	2	607.79936	1213.58417	0.76196	0.00046312	-0.66581	-0.00040468	0.096153	5.8442E-05	607.7988571805209	64.769	0.9436	64.838	64.313	65.257	0.068916					65	35	2	0	0	0	0.0058736	2	14620	14573;14620		79.935	73.211	1	338100			13773	4956	9061	9164	18715;18716	18716		288			-0.01408159597554004
MYPYIYHVL	9	Unmodified	_MYPYIYHVL_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8019409179688	2	599.801903	1197.58925	0.49514	0.00029699	-2.2253	-0.0013347	-1.7301	-0.0010377	599.8005806554041	68.197	1.0006	68.26	67.664	68.665	0.063507					79	36	3	0	0	0	0.11964	1	15720	15720		28.173	18.099	1	213580			13774	4956	9061	9165	18717	18717					-0.0016385573494517303
MYSDVWKQL	9	Oxidation (M)	_M(Oxidation (M))YSDVWKQL_		M(1)YSDVWKQL		M(46)YSDVWKQL	0	0	1		ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2841186523438	2	593.284074	1184.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.993	1	59.063	58.563	59.563	0.070477								0	0	0	0.059996	1	12915	12915		45.7	27.553	1				13775	4672	9062	9166	18718	18718		274			-0.031299379826123186
MYSFVNDKF	9	Oxidation (M)	_M(Oxidation (M))YSFVNDKF_		M(1)YSFVNDKF		M(57)YSFVNDKF	0	0	1		ENSG00000102053|ENST00000338957|ZC3H12B;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A;ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.7636108398438	2	583.762975	1165.5114	0.79674	0.00046511	-0.090513	-5.2838E-05	0.70623	0.00041227	583.7626507755033	54.508	0.60917	54.508	54.218	54.827	0					34	27	2	0	0	0	0.021628	2	11662	11656;11662		57.108	37.887	1	242530			13776	1291;3395	9063	9167	18719;18720	18720		77			-0.06473913390982489
MYSFVNDKF	9	Oxidation (M)	_M(Oxidation (M))YSFVNDKF_		M(1)YSFVNDKF		M(69)YSFVNDKF	0	0	1		ENSG00000102053|ENST00000338957|ZC3H12B;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A;ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.7628784179688	2	583.762975	1165.5114	0.71432	0.00041699	-0.12858	-7.5058E-05	0.58574	0.00034193	583.7626553492312	55.103	1.0439	55.103	54.871	55.915	0					53	37	3	0	0	0	0.0093024	1	11880	11880		69.338	53.491	1	251390			13777	1291;3395	9063	9167	18721	18721		77			-0.06473913390982489
MYSFVNDKF	9	Oxidation (M)	_M(Oxidation (M))YSFVNDKF_		M(1)YSFVNDKF		M(53)YSFVNDKF	0	0	1		ENSG00000102053|ENST00000338957|ZC3H12B;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A;ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.762451171875	2	583.762975	1165.5114	0.83166	0.00048549	-0.31119	-0.00018166	0.52047	0.00030383	583.7624043327437	55.1	0.56288	55.165	54.869	55.432	0.065128					36	22	2	0	0	0	0.026931	2	11740	11740;11747		53.317	41.676	1	200200			13778	1291;3395	9063	9167	18722;18723	18722		77			-0.06473913390982489
MYTGTTGL	8	Unmodified	_MYTGTTGL_					0	0	0			REV__nc|ENSG00000144642|Q6XE24-4|RBMS3	REV__nc|ENSG00000144642|Q6XE24-4|RBMS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.5072021484375	2	422.199479	842.384405	0.23818	0.00010056	-3.2019	-0.0013519	-2.9638	-0.0012513	422.1986509577111	74.889	1.0933	74.933	74.097	75.19	0.04454					63	39	3	0	0	0	0.3576	1	17536	17536		2.3027	1.5091	1	125430	+		13779	12807	9064	9168	18724	18724					-0.04309214545321538
MYTKLFVGF	9	Oxidation (M)	_M(Oxidation (M))YTKLFVGF_		M(1)YTKLFVGF		M(79)YTKLFVGF	0	0	1		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2879638671875	2	561.288628	1120.5627	0.70171	0.00039386	-0.32529	-0.00018258	0.37642	0.00021128	561.288496333154	67.003	0.6548	67.003	66.654	67.309	0					64	24	3	0	0	0	0.006264	1	15424	15424		78.728	42.601	1	828760			13780	2802	9065	9169	18725	18725		182			0.007244553737336901
MYTKLFVGF	9	Oxidation (M)	_M(Oxidation (M))YTKLFVGF_		M(1)YTKLFVGF		M(160)YTKLFVGF	0	0	1		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2891845703125	2	561.288628	1120.5627	0.4651	0.00026105	0.26227	0.00014721	0.72737	0.00040826	561.2887616974259	67.626	1.8408	67.626	67.263	69.104	0					227	69	5	0	0	0	3.513E-06	3	15762	15717;15762;15803		155.03	80.097	1	1584500			13781	2802	9065	9169	18726;18727;18728	18727		182			0.007244553737336901
MYTKLFVGF	9	Oxidation (M)	_M(Oxidation (M))YTKLFVGF_		M(1)YTKLFVGF		M(48)YTKLFVGF	0	0	1		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8192749023438	2	561.288628	1120.5627	0.57202	0.00032107	3.822	0.0021452	4.394	0.0024663	561.2905127743726	70.018	0.53741	70.018	69.761	70.298	0					28	19	2	0	0	0	0.089428	1	16378	16378		47.749	11.704	1	113310			13782	2802	9065	9169	18729	18729		182			0.007244553737336901
MYTKLFVGF	9	Oxidation (M)	_M(Oxidation (M))YTKLFVGF_		M(1)YTKLFVGF		M(69)YTKLFVGF	0	0	1		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2887573242188	2	561.288628	1120.5627	0.80129	0.00044975	-0.2028	-0.00011383	0.59849	0.00033592	561.2885172799728	67	0.67409	67.065	66.704	67.378	0.065071					41	23	2	0	0	0	0.0093779	1	15267	15267		69.105	40.023	1	767500			13783	2802	9065	9169	18730	18730		182			0.007244553737336901
MYTKLFVGF	9	Oxidation (M)	_M(Oxidation (M))YTKLFVGF_		M(1)YTKLFVGF		M(140)YTKLFVGF	0	0	1		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2888793945312	2	561.288628	1120.5627	0.69189	0.00038835	-0.118	-6.6229E-05	0.5739	0.00032212	561.2886080161359	67.659	1.8208	67.723	67.262	69.083	0.063507					221	66	6	0	0	0	1.7199E-05	3	15557	15557;15604;15654		142.08	85.903	1	1877300			13784	2802	9065	9169	18731;18732;18733	18731		182			0.007244553737336901
MYTKLFVGF	9	Unmodified	_MYTKLFVGF_					0	0	0		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2911376953125	2	553.291171	1104.56779	0.43474	0.00024054	-0.032414	-1.7934E-05	0.40233	0.0002226	553.2910591841255	71.486	1.2889	71.486	71.239	72.528	0					80	44	3	0	0	0	0.00017524	1	16895	16895		118.07	52.833	1	1047600			13785	2802	9065	9170	18734	18734					0.019687592363652584
MYTKLFVGF	9	Unmodified	_MYTKLFVGF_					0	0	0		nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-3|SMPD4	nc|ENSG00000136699|Q9NXE4-3|SMPD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.29150390625	2	553.291171	1104.56779	0.50606	0.00028	-0.1578	-8.7308E-05	0.34826	0.00019269	553.2910733200191	71.393	1.2199	71.452	71.183	72.403	0.058578					92	43	4	0	0	0	1.7199E-05	1	16663	16663		142.08	67.151	1	1048100			13786	2802	9065	9170	18735	18735					0.019687592363652584
MYTLGITNF	9	Unmodified	_MYTLGITNF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.262939453125	2	530.26261	1058.51067	0.70741	0.00037511	0.75882	0.00040237	1.4662	0.00077749	530.2629122911363	80.327	0.49033	80.351	80.188	80.679	0.023605					30	17	2	0	0	0	0.17428	1	19404	19404		21.537	6.6987	1	345060			13787	1695	9066	9171	18736	18736					-0.016247080400262348
MYVILLIR	8	Unmodified	_MYVILLIR_					0	0	0			REV__ENST00000370214.8_1_1:94982825-94982891:+|nuORF	REV__ENST00000370214.8_1_1:94982825-94982891:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.8177185058594	2	510.817356	1019.62016	-0.061014	-3.1167E-05	1.3262	0.00067744	1.2652	0.00064628	510.8180375803097	109.47	0.1201	109.47	109.39	109.51	0					18	14	2	0	0	0	0.54081	1	28173	28173		0.79363	0	1	340990	+		13788	11590	9067	9172	18737	18737					0.11113342369981183
MYVLWLFF	8	Unmodified	_MYVLWLFF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;chr16:57917476-57919099|373|28.46|0.66|5.43|-|2|CNGB1,CNGB1|1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2894287109375	2	559.790807	1117.56706	0.41246	0.00023089	1.0025	0.0005612	1.415	0.0007921	559.790979125332	79.099	0.090324	79.127	79.073	79.164	0.028336					4	2	2	0	0	0	0.3576	1	19033	19033		6.3541	2.0249	1	41661			13789	762	9068	9173	18738	18738					0.012979645873201662
MYVLWLFF	8	Unmodified	_MYVLWLFF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;chr16:57917476-57919099|373|28.46|0.66|5.43|-|2|CNGB1,CNGB1|1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	559.790807	1117.56706	0.55758	0.00031213	2.2495	0.0012592	2.807	0.0015714	560.2918852302262	79.428	0.14095	79.428	79.342	79.483	0	0.15031	0.00099014	NaN	6.3541	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41923			13790	762	9068	9173							0.012979645873201662
MYYTPGGY	8	Unmodified	_MYYTPGGY_					0	0	0			REV__tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	REV__tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1979675292969	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.929	1	19.019	18.519	19.519	0.089705								0	0	0	0.38822	1	1156	1156		0.79363	0	1		+		13791	13312	9069	9174	18739	18739					-0.09277214545318202
NAAAIFDLF	9	Unmodified	_NAAAIFDLF_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2555847167969	2	491.255643	980.496732	0.23758	0.00011671	-0.03617	-1.7769E-05	0.20141	9.8944E-05	491.255545168961	95.568	0.52422	95.568	95.328	95.852	0					57	22	3	0	0	0	0.0014903	4	24188	24150;24188;24228;24279		118.89	58.505	1	1400100			13792	5039	9070	9175	18740;18741;18742;18743	18741					0.005703825231876181
NAAAIFDLF	9	Unmodified	_NAAAIFDLF_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2557373046875	2	491.255643	980.496732	0.21494	0.00010559	0.028454	1.3978E-05	0.24339	0.00011957	491.2555471785479	95.498	0.55107	95.537	95.287	95.838	0.038864					58	24	3	0	0	0	0.00081324	3	24025	23980;24025;24066		126.57	75.711	1	1055100			13793	5039	9070	9175	18744;18745;18746	18745					0.005703825231876181
NAAAIFDLF	9	Unmodified	_NAAAIFDLF_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2557373046875	2	491.255643	980.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.859	1	95.898	95.398	96.398	0.038872								0	0	0	0.24978	1	24129	24129		9.3831	4.6271	1				13794	5039	9070	9175	18747	18747					0.005703825231876181
NAAARRSVF	9	Unmodified	_NAAARRSVF_					0	0	0		ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2763671875	2	496.275232	990.535912	0.50136	0.00024881	2.6964	0.0013382	3.1978	0.001587	496.2763733016811	91.134	0.48286	91.134	91.001	91.484	0					21	16	2	0	0	0	0.26684	1	22950	22950		10.824	0.75	1	256500			13795	5684	9071	9176	18748	18748					0.040265275974206816
NAAFATVAAI	10	Unmodified	_NAAFATVAAI_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.760986328125	2	474.761092	947.507631	-0.063459	-3.0128E-05	0.16659	7.9092E-05	0.10313	4.8964E-05	474.7610762407938	48.532	1.1119	48.532	48.311	49.422	0					100	38	5	0	0	0	0.11267	2	9937	9937;9993		43.772	1.8168	1	1590000	+		13796	9311	9072	9177	18749;18750	18749					0.031777848974684275
NAAFATVAAI	10	Unmodified	_NAAFATVAAI_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.76104736328125	2	474.761092	947.507631	-0.025065	-1.19E-05	0.22923	0.00010883	0.20417	9.6931E-05	474.7611001575636	48.441	0.835	48.521	48.301	49.136	0.080029					76	28	6	0	0	0	0.071862	1	9777	9777		51.63	2.0755	1	1432500	+		13797	9311	9072	9177	18751	18751					0.031777848974684275
NAAFKDVAL	9	Unmodified	_NAAFKDVAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7610168457031	2	474.761092	947.507631	-0.063459	-3.0128E-05	0.16659	7.9092E-05	0.10313	4.8964E-05	474.7610762407938	48.532	1.1119	48.532	48.311	49.422	0					100	38	5	0	0	0	0.0043442	2	9887	9838;9887		96.936	11.294	1	1590000			13798	3147;4364	9073	9178	18752;18753	18753					0.031777848974684275
NAAFKDVAL	9	Unmodified	_NAAFKDVAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7610778808594	2	474.761092	947.507631	-0.025065	-1.19E-05	0.22923	0.00010883	0.20417	9.6931E-05	474.7611001575636	48.441	0.835	48.521	48.301	49.136	0.080029					76	28	6	0	0	0	0.0046221	2	9731	9684;9731		86.332	7.6038	1	1432500			13799	3147;4364	9073	9178	18754;18755	18755					0.031777848974684275
NAAHQEALM	9	Oxidation (M)	_NAAHQEALM(Oxidation (M))_		NAAHQEALM(1)		NAAHQEALM(90)	0	0	1		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.72943115234375	2	500.729466	999.444379	-0.27858	-0.00013949	0.17737	8.8815E-05	-0.10121	-5.0678E-05	500.7296026586061	21.29	0.98196	21.29	21.02	22.002	0					307	99	4	0	0	0	0.0045224	2	1808	1808;1836		90.135	54.091	1	620200			13800	3142	9074	9179	18756;18757	18756		202			-0.05536523882074107
NAAHQEALM	9	Oxidation (M)	_NAAHQEALM(Oxidation (M))_		NAAHQEALM(1)		NAAHQEALM(70)	0	0	1		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7294006347656	2	500.729466	999.444379	-0.24743	-0.00012389	0.23856	0.00011945	-0.0088664	-4.4397E-06	500.7295278503594	22.42	2.7862	22.42	21.965	24.751	0					528	248	3	0	0	0	0.0089808	2	2113	2113;2154		70.332	45.658	1	375460			13801	3142	9074	9179	18758;18759	18758		202			-0.05536523882074107
NAAHQEALM	9	Oxidation (M)	_NAAHQEALM(Oxidation (M))_		NAAHQEALM(1)		NAAHQEALM(74)	0	0	1		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7294616699219	2	500.729466	999.444379	0.091526	4.583E-05	-0.16982	-8.5032E-05	-0.078289	-3.9202E-05	500.72943144958595	21.146	0.92419	21.246	20.936	21.861	0.099499					268	99	4	0	0	0	0.0077293	2	1665	1665;1691		74.2	49.692	1	591350			13802	3142	9074	9179	18760;18761	18760		202			-0.05536523882074107
NAAHQEALM	9	Oxidation (M)	_NAAHQEALM(Oxidation (M))_		NAAHQEALM(1)		NAAHQEALM(70)	0	0	1		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7294006347656	2	500.729466	999.444379	0.053734	2.6906E-05	-0.0089393	-4.4761E-06	0.044795	2.243E-05	500.72942008341533	22.201	1.9951	22.303	21.819	23.814	0.10178					383	190	4	0	0	0	0.0089808	3	1917	1917;1954;1993		70.332	45.658	1	355810			13803	3142	9074	9179	18762;18763;18764	18762		202			-0.05536523882074107
NAAHQEALM	9	Unmodified	_NAAHQEALM_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7318420410156	2	492.732009	983.449465	-0.073749	-3.6338E-05	-0.20141	-9.9241E-05	-0.27516	-0.00013558	492.7318753408535	29.434	0.88545	29.434	29.232	30.117	0					94	44	3	0	0	0	0.10833	2	4150	4111;4150		30.637	11.38	1	261050			13804	3142	9074	9180	18765;18766	18766					-0.04292220019465276
NAAHQEALM	9	Unmodified	_NAAHQEALM_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7320251464844	2	492.732009	983.449465	-0.068455	-3.373E-05	-0.0051947	-2.5596E-06	-0.07365	-3.629E-05	492.73192045966744	29.321	0.72073	29.399	29.212	29.933	0.078289					80	41	3	0	0	0	0.20358	1	3961	3961		18.146	3.5647	1	250280			13805	3142	9074	9180	18767	18767					-0.04292220019465276
NAAMVFEFL	9	Oxidation (M)	_NAAM(Oxidation (M))VFEFL_		NAAM(1)VFEFL		NAAM(48)VFEFL	0	0	1		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2543334960938	2	529.254785	1056.49502	0.42912	0.00022711	0.20424	0.00010809	0.63336	0.00033521	529.2551024163639	86.123	0.60923	86.148	85.75	86.359	0.025169					28	21	2	0	0	0	0.03472	1	21167	21167		47.749	20.865	1	165230			13806	3793	9075	9181	18768	18768		234			-0.030969945570632262
NAAMVFEFL	9	Oxidation (M)	_NAAM(Oxidation (M))VFEFL_		NAAM(1)VFEFL		NAAM(48)VFEFL	0	0	1		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2545166015625	2	529.254785	1056.49502	0.22706	0.00012017	-0.98712	-0.00052244	-0.76006	-0.00040226	529.25413007685	87.36	0.80986	87.387	87.093	87.903	0.02758					59	31	3	0	0	0	0.03472	1	21554	21554		47.749	17.524	1	230250			13807	3793	9075	9181	18769	18769		234			-0.030969945570632262
NAANIFERL	9	Unmodified	_NAANIFERL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2;ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2826538085938	2	524.282723	1046.55089	-0.098538	-5.1662E-05	-0.029678	-1.556E-05	-0.12822	-6.7221E-05	524.2826855374675	58.833	0.68228	58.833	58.595	59.277	0					40	24	2	0	0	0	0.00090591	2	12985	12985;13035		125.04	21.618	1	605470			13808	2243	9076	9182	18770;18771	18770					0.02947974674748366
NAANIFERL	9	Unmodified	_NAANIFERL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2;ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2827758789062	2	524.282723	1046.55089	0.090134	4.7256E-05	0.92558	0.00048526	1.0157	0.00053252	524.2826514083137	58.739	0.59781	58.809	58.561	59.159	0.070477					47	21	3	0	0	0	0.00032461	1	12833	12833		114.19	21.021	1	468030			13809	2243	9076	9182	18772	18772					0.02947974674748366
NAAVGEPAF	9	Unmodified	_NAAVGEPAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.2166442871094	2	438.216517	874.418482	0.31197	0.00013671	-0.62949	-0.00027585	-0.31752	-0.00013914	438.2161955327646	51.323	0.58887	51.323	51.124	51.713	0					32	19	3	0	0	0	0.11547	1	10726	10726		29.082	13.234	1	105790			13810	774	9077	9183	18773	18773					-0.023750500620394632
NAAVGEPAF	9	Unmodified	_NAAVGEPAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.2170104980469	2	438.216517	874.418482	0.14503	6.3553E-05	-0.041569	-1.8216E-05	0.10346	4.5337E-05	438.2164084643707	51.268	0.45448	51.337	51.077	51.531	0.069874					37	17	3	0	0	0	0.12214	1	10550	10550		27.629	11.782	1	94907			13811	774	9077	9183	18774	18774					-0.023750500620394632
NADAIVVKL	9	Unmodified	_NADAIVVKL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7846374511719	2	471.784567	941.554582	0.32044	0.00015118	-0.098347	-4.6399E-05	0.2221	0.00010478	471.78447255635933	53.998	0.71249	53.998	53.739	54.451	0					73	25	4	0	0	0	1.9628E-05	3	11542	11491;11542;11588		139.78	34.595	1	1918200			13812	5280	9078	9184	18775;18776;18777	18776					0.08146644448606821
NADAIVVKL	9	Unmodified	_NADAIVVKL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7846374511719	2	471.784567	941.554582	0.22101	0.00010427	0.059881	2.8251E-05	0.28089	0.00013252	471.7845626982307	53.936	0.68708	54.001	53.74	54.427	0.065128					68	25	4	0	0	0	0.00069152	2	11398	11398;11439		128.57	32.206	1	1435500			13813	5280	9078	9184	18778;18779	18778					0.08146644448606821
NADLADLER	9	Unmodified	_NADLADLER_					0	0	0			REV__ENST00000436565.2_1_13:77561342-77561690:+|nuORF	REV__ENST00000436565.2_1_13:77561342-77561690:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7392578125	2	508.753995	1015.49344	-0.24873	-0.00012654	-0.76844	-0.00039095	-1.0172	-0.00051749	508.7536146496061	25.074	0.25444	25.074	24.971	25.226	0					33	19	2	0	0	0	0.21603	1	2845	2845		20.454	0	1	24447	+		13814	9220	9079	9185	18780	18780					-0.0136891232148173
NADPIAKYL	9	Unmodified	_NADPIAKYL_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.77435302734375	2	502.7742	1003.53385	0.38549	0.00019382	0.15854	7.9711E-05	0.54404	0.00027353	502.7741820425127	57.392	1.3022	57.392	56.725	58.027	0					96	46	4	0	0	0	0.0089808	4	12577	12536;12577;12629;12663		70.332	41.25	1	954930			13815	4506	9080	9186	18781;18782;18783;18784	18782					0.032220540689422705
NADPIAKYL	9	Unmodified	_NADPIAKYL_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.7743835449219	2	502.7742	1003.53385	0.36759	0.00018481	0.19412	9.7598E-05	0.56171	0.00028241	502.774174629442	57.335	0.8009	57.403	57.092	57.893	0.068375					77	30	4	0	0	0	0.015341	2	12388	12388;12438		61.602	37.581	1	760280			13816	4506	9080	9186	18785;18786	18785					0.032220540689422705
NADPILISL	9	Unmodified	_NADPILISL_					0	0	0		ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2767639160156	2	478.276575	954.538597	0.55064	0.00026336	0.37718	0.0001804	0.92783	0.00044376	478.2766816680479	81.108	0.47352	81.108	80.873	81.347	0					28	15	2	0	0	0	0.13369	1	19803	19803		40.239	5.3071	1	285300			13817	1684	9081	9187	18787	18787					0.05950938211731227
NADPILISL	9	Unmodified	_NADPILISL_					0	0	0		ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7786560058594	2	478.276575	954.538597	0.28741	0.00013746	-0.81092	-0.00038785	-0.52352	-0.00025039	478.2769381212384	81.094	0.77318	81.118	80.771	81.544	0.023613					86	27	5	0	0	0	0.064247	1	19632	19632		40.239	5.3071	1	497600			13818	1684	9081	9187	18788	18788					0.05950938211731227
NADPLKVYP	9	Unmodified	_NADPLKVYP_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7503356933594	2	508.7742	1015.53385	0.6011	0.00030582	-0.48003	-0.00024422	0.12107	6.1599E-05	508.7737563379044	70.878	0.164	70.936	70.892	71.056	0.058578					7	5	2	0	0	0	0.2491	1	16538	16538		8.5933	1.8701	1	47498			13819	471	9082	9188	18789	18789					0.026700540689603258
NADPQAVTM	9	Oxidation (M)	_NADPQAVTM(Oxidation (M))_		NADPQAVTM(1)		NADPQAVTM(200)	0	0	1		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7164306640625	2	481.716024	961.417496	-0.39527	-0.00019041	0.020103	9.6837E-06	-0.37517	-0.00018072	481.716489724858	29.666	1.8605	29.666	29.32	31.181	0					240	95	6	0	0	0	1.2994E-17	8	4209	4131;4172;4209;4250;4287;4329;4373;4540		203.64	111.15	1	5972500			13820	1308	9083	9189	18790;18791;18792;18793;18794;18795;18796;18797	18792		79			-0.0647563249325458
NADPQAVTM	9	Oxidation (M)	_NADPQAVTM(Oxidation (M))_		NADPQAVTM(1)		NADPQAVTM(180)	0	0	1		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7162780761719	2	481.716024	961.417496	-0.35622	-0.00017159	0.2093	0.00010082	-0.14692	-7.0772E-05	481.716246666383	32.251	7.5999	32.251	31.181	38.781	0					511	297	4	0	0	0	3.2925E-10	10	4970	4845;4888;4926;4970;5010;5050;5089;5132;5182;5268		176.43	94.537	1	2271200			13821	1308	9083	9189	18798;18799;18800;18801;18802;18803;18804;18805;18806;18807	18801		79			-0.0647563249325458
NADPQAVTM	9	Oxidation (M)	_NADPQAVTM(Oxidation (M))_		NADPQAVTM(1)		NADPQAVTM(180)	0	0	1		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7163391113281	2	481.716024	961.417496	-0.36531	-0.00017598	0.086183	4.1516E-05	-0.27913	-0.00013446	481.71647495523484	29.524	1.295	29.603	29.212	30.507	0.078287					243	77	5	0	0	0	3.2925E-10	5	4010	3966;4010;4049;4085;4129		176.43	94.537	1	4674400			13822	1308	9083	9189	18808;18809;18810;18811;18812	18809		79			-0.0647563249325458
NADPQAVTM	9	Oxidation (M)	_NADPQAVTM(Oxidation (M))_		NADPQAVTM(1)		NADPQAVTM(150)	0	0	1		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7161560058594	2	481.716024	961.417496	-0.31631	-0.00015237	0.22531	0.00010854	-0.090995	-4.3834E-05	481.7161917580513	32.17	6.1799	32.243	30.503	36.683	0.073784					455	280	3	0	0	0	1.3975E-05	12	4796	4664;4710;4752;4796;4838;4877;4913;4952;4989;5031;5078;5123		145.13	73.207	1	1902600			13823	1308	9083	9189	18813;18814;18815;18816;18817;18818;18819;18820;18821;18822;18823;18824	18816		79			-0.0647563249325458
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7182312011719	2	473.718567	945.422581	-0.83622	-0.00039613	0.062809	2.9754E-05	-0.77342	-0.00036638	473.7185835606205	41.953	0.83908	41.953	41.65	42.489	0					59	28	4	0	0	0	0.0046221	3	7910	7836;7861;7910		86.332	44.492	1	1383500			13824	1308	9083	9190	18825;18826;18827	18827					-0.052313286306457485
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.71832275390625	2	473.718567	945.422581	-0.64882	-0.00030736	0.15991	7.5751E-05	-0.48891	-0.00023161	473.71867055886315	41.862	0.99193	41.951	41.687	42.678	0.089764					70	37	4	0	0	0	0.0042616	3	7744	7695;7744;7787		100.09	38.733	1	1231500			13825	1308	9083	9190	18828;18829;18830	18829					-0.052313286306457485
NADSSVQLL	9	Unmodified	_NADSSVQLL_					0	0	0		ENST00000590265.5_1_19:1242319-1244433:+|nuORF;ENSG00000099624|ENST00000215375|ATP5F1D	ENST00000590265.5_1_19:1242319-1244433:+|nuORF	ENST00000590265.5_1_19:1242319-1244433:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7452697753906	2	473.745639	945.476725	-0.041229	-1.9532E-05	-0.023062	-1.0926E-05	-0.064291	-3.0458E-05	473.7455947925817	58.162	0.28198	58.162	57.935	58.217	0					24	9	3	0	0	0	0.0081278	1	12787	12787		72.968	22.113	1	304400			13826	1129	9084	9191	18831	18831					0.0018058679257819676
NADSSVQLL	9	Unmodified	_NADSSVQLL_					0	0	0		ENST00000590265.5_1_19:1242319-1244433:+|nuORF;ENSG00000099624|ENST00000215375|ATP5F1D	ENST00000590265.5_1_19:1242319-1244433:+|nuORF	ENST00000590265.5_1_19:1242319-1244433:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.74578857421875	2	473.745639	945.476725	-0.19584	-9.2778E-05	0.31244	0.00014802	0.1166	5.5241E-05	473.745642012818	58.373	0.28592	58.373	58.256	58.542	0					17	10	2	0	0	0	0.14444	1	12860	12860		24.991	0.97039	1	155850			13827	1129	9084	9191	18832	18832					0.0018058679257819676
NADSSVQLL	9	Unmodified	_NADSSVQLL_					0	0	0		ENST00000590265.5_1_19:1242319-1244433:+|nuORF;ENSG00000099624|ENST00000215375|ATP5F1D	ENST00000590265.5_1_19:1242319-1244433:+|nuORF	ENST00000590265.5_1_19:1242319-1244433:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7455139160156	2	473.745639	945.476725	-0.042212	-1.9998E-05	0.19636	9.3026E-05	0.15415	7.3029E-05	473.7456434360236	58.054	0.57533	58.122	57.869	58.444	0.068375					31	21	2	0	0	0	0.032194	1	12629	12629		49.554	15.452	1	228790			13828	1129	9084	9191	18833	18833					0.0018058679257819676
NADSVEQSF	9	Unmodified	_NADSVEQSF_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2872619628906	2	498.717079	995.419604	-0.1608	-8.0194E-05	0.20558	0.00010253	0.044783	2.2334E-05	498.71714826083644	45.365	0.49634	45.365	45.151	45.647	0					37	16	3	0	0	0	0.13369	1	8909	8909		40.239	8.1222	1	156140			13829	4465	9085	9192	18834	18834					-0.0782888048379391
NADSVEQSF	9	Unmodified	_NADSVEQSF_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.28753662109375	2	498.717079	995.419604	0.096442	4.8097E-05	0.45583	0.00022733	0.55227	0.00027543	498.71722511488474	45.284	0.40308	45.372	45.148	45.551	0.08754					37	15	3	0	0	0	0.09598	1	8749	8749		47.594	23.574	1	136840			13830	4465	9085	9192	18835	18835					-0.0782888048379391
NAEDADGKDVF	11	Unmodified	_NAEDADGKDVF_					0	0	0		ENSG00000171155|ENST00000304661|C1GALT1C1	ENSG00000171155|ENST00000304661|C1GALT1C1	ENSG00000171155|ENST00000304661|C1GALT1C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.7593383789062	2	590.759475	1179.5044	0.35448	0.00020941	-0.30324	-0.00017914	0.051235	3.0268E-05	590.7592560810698	37.414	0.42791	37.414	37.219	37.646	0					24	14	2	0	0	0	0.40977	1	6499	6499		2.086	0.24177	1	71490			13831	4429	9086	9193	18836	18836					-0.0781755473785779
NAEDVQHQIL	10	Unmodified	_NAEDVQHQIL_					0	0	0		nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-4|HMMR	nc|ENSG00000072571|O75330-4|HMMR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.7936401367188	2	583.793652	1165.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.329	1	43.329	42.829	43.829	0								0	0	0	0.19393	1	8298	8298		30.703	17.089	1				13832	787	9087	9194	18837	18837					-0.0034126536731946544
NAEDVQHQIL	10	Unmodified	_NAEDVQHQIL_					0	0	0		nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-4|HMMR	nc|ENSG00000072571|O75330-4|HMMR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.7935791015625	2	583.793652	1165.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.303	1	43.393	42.893	43.893	0.089764								0	0	0	0.28366	1	8163	8163		19.626	10.082	1				13833	787	9087	9194	18838	18838					-0.0034126536731946544
NAEGHDPGL	9	Unmodified	_NAEGHDPGL_					0	0	0		nc|ENSG00000160953|Q2TAK8-2|PWWP3A;ENST00000587460.5_1_19:1358605-1376572:+|nuORF;ENSG00000160953|ENST00000591337|PWWP3A;nc|ENSG00000160953|Q2TAK8-3|PWWP3A;ENST00000591433.5_1_19:1358605-1371443:+|nuORF	nc|ENSG00000160953|Q2TAK8-2|PWWP3A	nc|ENSG00000160953|Q2TAK8-2|PWWP3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2062683105469	2	455.206681	908.398809	-0.15457	-7.0361E-05	-0.4892	-0.00022269	-0.64377	-0.00029305	455.20640299439054	25.575	0.25439	25.666	25.558	25.812	0.091507					30	19	2	0	0	0	0.3354	1	2882	2882		2.0598	1.2661	1	16361			13834	3787	9088	9195	18839	18839					-0.059054260727975816
NAELWQVSW	9	Unmodified	_NAELWQVSW_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7744140625	2	566.774731	1131.53491	0.030569	1.7326E-05	0.22476	0.00012739	0.25532	0.00014471	566.7748334511259	58.62	2.6566	58.62	58.256	60.913	0					152	97	3	0	0	0	0.065576	11	13134	12871;12917;12959;13020;13134;13179;13226;13269;13314;13362;13414		39.95	36.127	1	575490			13835	3232	9089	9196	18840;18841;18842;18843;18844;18845;18846;18847;18848;18849;18850	18844					-0.025597315621325833
NAELWQVSW	9	Unmodified	_NAELWQVSW_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330322265625	2	566.774731	1131.53491	0.35172	0.00019935	2.0327	0.0011521	2.3844	0.0013514	567.2779767148975	87.678	1.1891	87.678	87.043	88.232	0					72	44	3	0	0	0	0.23478	1	21699	21699		12.241	2.8932	1	106240			13836	3232	9089	9196	18851	18851					-0.025597315621325833
NAELWQVSW	9	Unmodified	_NAELWQVSW_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7750244140625	2	566.774731	1131.53491	0.15277	8.6586E-05	1.0413	0.00059019	1.1941	0.00067677	566.7748162379166	59.154	3.0482	59.226	58.186	61.234	0.072338					201	112	3	0	0	0	0.083124	10	12726	12674;12726;12770;12818;12893;13010;13058;13106;13202;13482		36.127	8.7651	1	546640			13837	3232	9089	9196	18852;18853;18854;18855;18856;18857;18858;18859;18860;18861	18853					-0.025597315621325833
NAEPEPRSL	9	Unmodified	_NAEPEPRSL_					0	0	0		ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.756591796875	2	506.756538	1011.49852	-0.19134	-9.6962E-05	0.039887	2.0213E-05	-0.15145	-7.6749E-05	506.7566254949756	31.032	1.2197	31.032	30.757	31.977	0					147	56	5	0	0	0	0.02143	5	4604	4566;4604;4644;4689;4748		57.249	15.409	1	1635200			13838	4007	9090	9197	18862;18863;18864;18865;18866	18863					-0.006766084588548438
NAEPEPRSL	9	Unmodified	_NAEPEPRSL_					0	0	0		ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.756591796875	2	506.756538	1011.49852	-0.12618	-6.3942E-05	0.0045339	2.2976E-06	-0.12164	-6.1644E-05	506.7565732467391	31.011	1.072	31.085	30.828	31.9	0.07378					133	52	4	0	0	0	0.0056336	4	4479	4436;4479;4519;4563		80.676	34.976	1	1402700			13839	4007	9090	9197	18867;18868;18869;18870	18868					-0.006766084588548438
NAESGRGQVM	10	Oxidation (M)	_NAESGRGQVM(Oxidation (M))_		NAESGRGQVM(1)		NAESGRGQVM(210)	0	0	1		nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-4|IL32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7431030273438	2	532.743105	1063.47166	-0.34254	-0.00018249	0.10264	5.4679E-05	-0.23991	-0.00012781	532.7431823433225	16.473	2.7976	16.473	16.202	19	0					739	342	4	0	0	0	8.8315E-25	7	740	718;740;763;786;812;834;907		214.05	139.85	1	538620			13840	400	9091	9198	18871;18872;18873;18874;18875;18876;18877	18872		16			-0.057540403416851404
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-4|IL32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7455444335938	2	524.745647	1047.47674	-0.28601	-0.00015008	-0.26977	-0.00014156	-0.55578	-0.00029164	524.745684541576	22.492	1.7997	22.492	22.274	24.074	0					326	160	6	0	0	0	5.6293E-11	12	2140	2098;2140;2174;2208;2236;2243;2276;2311;2349;2359;2408;2441		166.77	120.75	1	1695600			13841	400	9091	9199	18878;18879;18880;18881;18882;18883;18884;18885;18886;18887;18888;18889	18879					-0.045097364790763095
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-4|IL32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.74560546875	2	524.745647	1047.47674	-0.070844	-3.7175E-05	-0.40885	-0.00021454	-0.4797	-0.00025172	524.7456296719232	22.335	1.6262	22.437	22.148	23.774	0.10178					353	151	5	0	0	0	1.5419E-05	11	1988	1950;1988;2021;2052;2083;2118;2153;2183;2188;2239;2241		132.13	94.161	1	1668100			13842	400	9091	9199	18890;18891;18892;18893;18894;18895;18896;18897;18898;18899;18900	18891					-0.045097364790763095
NAEVTTNIP	9	Unmodified	_NAEVTTNIP_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.74481201171875	2	479.745639	957.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.325	1	23.325	22.825	23.825	0								0	0	0	0.28527	1	2375	2375		2.0598	0	1				13843	4441	9092	9200	18901	18901					-0.00371413207437854
NAFEDSFSSIL	11	Unmodified	_NAFEDSFSSIL_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.2886352539062	2	615.287868	1228.56118	-0.36517	-0.00022468	0.58066	0.00035727	0.21549	0.00013259	615.2887085815795	86.671	1.4712	86.671	86.383	87.855	0					217	58	6	0	0	0	2.415E-14	9	21472	21443;21472;21519;21560;21600;21645;21693;21743;21787		190.03	146.26	1	54206000			13844	1939	9093	9201	18902;18903;18904;18905;18906;18907;18908;18909;18910	18903					-0.043955071813115865
NAFEDSFSSIL	11	Unmodified	_NAFEDSFSSIL_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.2886352539062	2	615.287868	1228.56118	-0.15232	-9.3718E-05	0.4115	0.00025319	0.25919	0.00015947	615.2886293511347	86.661	1.1902	86.689	86.39	87.58	0.027573					209	52	6	0	0	0	2.415E-14	5	21318	21272;21318;21364;21410;21455		190.03	115.1	1	54262000			13845	1939	9093	9201	18911;18912;18913;18914;18915	18912					-0.043955071813115865
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.2584228515625	2	520.258382	1038.50221	0.16585	8.6286E-05	0.014378	7.4801E-06	0.18023	9.3766E-05	520.2584422646412	87.004	1.2379	87.004	86.71	87.948	0					158	49	5	0	0	0	8.9867E-09	4	21597	21556;21597;21643;21690		160.52	103.04	1	18392000			13846	1743	9094	9202	18916;18917;18918;18919	18917					-0.015499386850024166
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.258544921875	2	520.258382	1038.50221	0.11781	6.1293E-05	0.051944	2.7024E-05	0.16976	8.8317E-05	520.2584813171039	86.927	1.9507	86.955	86.724	88.674	0.027573					175	78	5	0	0	0	1.2541E-09	4	21425	21382;21425;21471;21507		174.73	117.26	1	16355000			13847	1743	9094	9202	18920;18921;18922;18923	18921					-0.015499386850024166
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(170)	0	0	1		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7630615234375	2	535.762975	1069.5114	0.20496	0.00010981	-0.20877	-0.00011185	-0.0038094	-2.0409E-06	535.7630772128279	38.988	1.7641	38.988	38.741	40.505	0					184	65	4	0	0	0	4.6221E-09	3	6962	6962;7004;7050		168.54	108.46	1	3125800			13848	2881	9095	9203	18924;18925;18926	18924		186			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(200)	0	0	1		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7623291015625	2	535.762975	1069.5114	-0.43743	-0.00023436	-0.35686	-0.00019119	-0.79428	-0.00042555	535.7628170925193	41.329	2.0707	41.329	40.208	42.279	0					237	74	4	0	0	0	1.8365E-14	3	7749	7650;7698;7749		195.45	116.72	1	1170500			13849	2881	9095	9203	18927;18928;18929	18929		186			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(200)	0	0	1		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7632446289062	2	535.762975	1069.5114	0.49741	0.00026649	-0.35166	-0.00018841	0.14575	7.8086E-05	535.7629377861656	38.895	1.3909	38.982	38.744	40.135	0.08688					143	55	4	0	0	0	1.8365E-14	3	6848	6808;6848;6890		195.45	126.35	1	2647700			13850	2881	9095	9203	18930;18931;18932	18931		186			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(180)	0	0	1		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7625732421875	2	535.762975	1069.5114	-0.070367	-3.77E-05	-0.50269	-0.00026932	-0.57305	-0.00030702	535.7627429371765	41.187	2.2755	41.277	39.994	42.27	0.089645					234	89	4	0	0	0	1.1335E-12	3	7579	7492;7534;7579		179.17	108.04	1	947540			13851	2881	9095	9203	18933;18934;18935	18935		186			-0.02057913391013244
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7655639648438	2	527.765517	1053.51648	0.18346	9.6826E-05	1.9958	0.0010533	2.1793	0.0011502	527.7661647312113	49.613	1.2858	49.613	49.394	50.68	0					109	45	4	0	0	0	0.0011184	2	10220	10178;10220		121.53	61.46	1	725200			13852	2881	9095	9204	18936;18937	18937					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.765625	2	527.765517	1053.51648	0.15428	8.1425E-05	2.2019	0.0011621	2.3562	0.0012435	527.7662505176281	49.542	1.034	49.619	49.384	50.418	0.076603					94	36	4	0	0	0	0.0040167	2	10071	10024;10071		103.42	51.151	1	660490			13853	2881	9095	9204	18938;18939	18939					-0.008136095283816758
NAFQGFFIL	9	Unmodified	_NAFQGFFIL_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;ENSG00000153294|ENST00000283303|ADGRF4;ENSG00000153292|ENST00000371253|ADGRF1	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;ENSG00000153292|ENST00000371253|ADGRF1	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7794189453125	2	528.779285	1055.54402	0.59543	0.00031485	-0.327	-0.00017291	0.26844	0.00014194	528.779078519435	97.8	0.40656	97.8	97.638	98.045	0					45	20	3	0	0	0	0.11896	1	24895	24895		39.957	24.11	1	160330			13854	7550;3522	9096	9205	18940	18940					0.018466617941840013
NAFQGFFIL	9	Unmodified	_NAFQGFFIL_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;ENSG00000153294|ENST00000283303|ADGRF4;ENSG00000153292|ENST00000371253|ADGRF1	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;ENSG00000153292|ENST00000371253|ADGRF1	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7797241210938	2	528.779285	1055.54402	0.56453	0.00029851	-0.58225	-0.00030788	-0.017727	-9.3734E-06	528.779127560352	97.764	0.39922	97.805	97.664	98.063	0.040855					40	20	3	0	0	0	0.11896	1	24704	24704		39.957	18.211	1	218680			13855	7550;3522	9096	9205	18941	18941					0.018466617941840013
NAFSMFMH	8	Unmodified	_NAFSMFMH_					0	0	0		ENST00000298125.6_1_13:52158687-52249327:+|nuORF	ENST00000298125.6_1_13:52158687-52249327:+|nuORF	ENST00000298125.6_1_13:52158687-52249327:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7071838378906	2	492.706948	983.399343	-0.04373	-2.1546E-05	0.51066	0.00025161	0.46693	0.00023006	492.7070648614959	32.253	3.418	32.253	31.258	34.676	0					230	140	2	0	0	0	0.45077	1	4936	4936		19.439	19.439	1	229790			13856	5965	9097	9206	18942	18942					-0.09302045948959403
NAFSMFMH	8	Unmodified	_NAFSMFMH_					0	0	0		ENST00000298125.6_1_13:52158687-52249327:+|nuORF	ENST00000298125.6_1_13:52158687-52249327:+|nuORF	ENST00000298125.6_1_13:52158687-52249327:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7071533203125	2	492.706948	983.399343	-0.023653	-1.1654E-05	0.58753	0.00028948	0.56388	0.00027783	492.70711872607893	32.165	2.2865	32.238	31.284	33.571	0.073784					244	106	3	0	0	0	0.49441	1	4845	4845		13.508	13.508	1	193360			13857	5965	9097	9206	18943	18943					-0.09302045948959403
NAFTMPLHM	9	Unmodified	_NAFTMPLHM_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2498779296875	2	531.24898	1060.48341	0.16591	8.8138E-05	1.2126	0.00064418	1.3785	0.00073232	531.2497430505348	87.03	0.71952	87.03	86.683	87.402	0					86	30	4	0	0	0	0.12809	1	21629	21629		26.884	0.54238	1	2225900			13858	772	9098	9207	18944	18944					-0.04441514852055661
NAFYSLSPS	9	Unmodified	_NAFYSLSPS_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.70709228515625	2	493.234907	984.455261	-0.044885	-2.2139E-05	-3.505	-0.0017288	-3.5499	-0.0017509	493.23296844482024	29.679	0.1773	29.758	29.675	29.853	0.078287					16	10	2	0	0	0	0.2446	1	4075	4075		11.64	1.4569	1	12396			13859	371	9099	9208	18945	18945					-0.037587982361287686
NAGNIVVSR	9	Unmodified	_NAGNIVVSR_					0	0	0		nc|ENSG00000130558|Q99784-5|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1;ENSG00000130558|ENST00000371793|OLFM1;ENSG00000105088|ENST00000264833|OLFM2	nc|ENSG00000130558|Q99784-5|OLFM1	nc|ENSG00000130558|Q99784-5|OLFM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2613830566406	2	465.261791	928.509028	-0.12634	-5.8782E-05	-0.60942	-0.00028354	-0.73576	-0.00034232	465.26138000612013	29.045	0.51061	29.045	28.84	29.351	0					69	30	3	0	0	0	0.054729	1	4012	4012		42.312	19.654	1	102990			13860	2475	9100	9209	18946	18946					0.041914189862382045
NAGNIVVSR	9	Unmodified	_NAGNIVVSR_					0	0	0		nc|ENSG00000130558|Q99784-5|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1;ENSG00000130558|ENST00000371793|OLFM1;ENSG00000105088|ENST00000264833|OLFM2	nc|ENSG00000130558|Q99784-5|OLFM1	nc|ENSG00000130558|Q99784-5|OLFM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.26141357421875	2	465.261791	928.509028	-0.30374	-0.00014132	-0.32415	-0.00015081	-0.62789	-0.00029213	465.2615676489553	28.971	0.40278	29.049	28.868	29.271	0.078287					51	29	2	0	0	0	0.029489	1	3862	3862		51.488	28.83	1	101400			13861	2475	9100	9209	18947	18947					0.041914189862382045
NAHDSSFK	8	Unmodified	_NAHDSSFK_					0	0	0		ENST00000382361.7_1_7:5646078-5646261:+|nuORF	ENST00000382361.7_1_7:5646078-5646261:+|nuORF	ENST00000382361.7_1_7:5646078-5646261:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2097473144531	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.26	1	99.26	98.76	99.76	0								0	0	0	0.38822	1	25320	25320		0.69038	0	1				13862	6302	9101	9210	18948	18948					-0.05213122210182064
NAHDSSFK	8	Unmodified	_NAHDSSFK_					0	0	0		ENST00000382361.7_1_7:5646078-5646261:+|nuORF	ENST00000382361.7_1_7:5646078-5646261:+|nuORF	ENST00000382361.7_1_7:5646078-5646261:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.20977783203125	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.09	1	101.09	100.59	101.59	0								0	0	0	0.38822	1	25879	25879		0.69038	0	1				13863	6302	9101	9210	18949	18949					-0.05213122210182064
NAHDSSFK	8	Unmodified	_NAHDSSFK_					0	0	0		ENST00000382361.7_1_7:5646078-5646261:+|nuORF	ENST00000382361.7_1_7:5646078-5646261:+|nuORF	ENST00000382361.7_1_7:5646078-5646261:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.21014404296875	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.79	1	100.83	100.33	101.33	0.042839								0	0	0	0.38822	1	25633	25633		0.69038	0	1				13864	6302	9101	9210	18950	18950					-0.05213122210182064
NAHDSSFK	8	Unmodified	_NAHDSSFK_					0	0	0		ENST00000382361.7_1_7:5646078-5646261:+|nuORF	ENST00000382361.7_1_7:5646078-5646261:+|nuORF	ENST00000382361.7_1_7:5646078-5646261:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2093200683594	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.74	1	105.77	105.27	106.27	0.029739								0	0	0	0.38822	1	27063	27063		0.69038	0	1				13865	6302	9101	9210	18951	18951					-0.05213122210182064
NAIEDTIFYL	10	Unmodified	_NAIEDTIFYL_					0	0	0		ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101	ENSG00000074319|ENST00000251968|TSG101	ENSG00000074319|ENST00000251968|TSG101	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.803466796875	2	599.803154	1197.59175	0.43827	0.00026288	0.2847	0.00017076	0.72297	0.00043364	599.8032075960302	91.37	0.56089	91.37	91.063	91.624	0					54	20	4	0	0	0	0.00099206	3	22891	22891;22938;22988		90.135	42.386	1	682250			13866	804	9102	9211	18952;18953;18954	18952					0.0008627120371329511
NAIEDTIFYL	10	Unmodified	_NAIEDTIFYL_					0	0	0		ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101	ENSG00000074319|ENST00000251968|TSG101	ENSG00000074319|ENST00000251968|TSG101	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8035278320312	2	599.803154	1197.59175	0.21108	0.0001266	0.48485	0.00029082	0.69593	0.00041742	599.8033839379729	91.325	0.50227	91.36	91.141	91.644	0.035439					44	17	3	0	0	0	0.00099206	3	22726	22726;22771;22818		90.135	50.185	1	590380			13867	804	9102	9211	18955;18956;18957	18955					0.0008627120371329511
NAIEQDYRL	9	Unmodified	_NAIEQDYRL_					0	0	0		ENSG00000154928|ENST00000398015|EPHB1;nc|ENSG00000154928|P54762-5|EPHB1;ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;ENSG00000196411|ENST00000358173|EPHB4;nc|ENSG00000133216|P29323|EPHB2	ENSG00000154928|ENST00000398015|EPHB1	ENSG00000154928|ENST00000398015|EPHB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2827758789062	2	561.28292	1120.55129	0.174	9.7661E-05	-0.22329	-0.00012533	-0.049291	-2.7666E-05	561.2827287381989	46.464	0.3274	46.464	46.267	46.594	0					26	16	3	0	0	0	0.010033	1	9241	9241		67.081	28.466	1	406100			13868	3571	9103	9212	18958	18958					-0.004166503960504997
NAIEQDYRL	9	Unmodified	_NAIEQDYRL_					0	0	0		ENSG00000154928|ENST00000398015|EPHB1;nc|ENSG00000154928|P54762-5|EPHB1;ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;ENSG00000196411|ENST00000358173|EPHB4;nc|ENSG00000133216|P29323|EPHB2	ENSG00000154928|ENST00000398015|EPHB1	ENSG00000154928|ENST00000398015|EPHB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.282958984375	2	561.28292	1120.55129	0.22772	0.00012781	-0.12142	-6.8153E-05	0.1063	5.9662E-05	561.2828279708341	46.392	0.34248	46.477	46.215	46.558	0.085617					23	14	2	0	0	0	0.077529	1	9076	9076		55.235	23.197	1	347050			13869	3571	9103	9212	18959	18959					-0.004166503960504997
NAIKDYEL	8	Unmodified	_NAIKDYEL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.24993896484375	2	483.250557	964.486562	-0.4004	-0.00019349	0.17068	8.2481E-05	-0.22972	-0.00011101	483.25063273229307	43.928	0.89114	43.928	43.663	44.554	0					105	30	5	0	0	0	0.074039	1	8435	8435		58.679	12.658	1	2537000			13870	4738	9104	9213	18960	18960					0.002897747979545784
NAIKDYEL	8	Unmodified	_NAIKDYEL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.25042724609375	2	483.250557	964.486562	-0.26606	-0.00012857	0.28238	0.00013646	0.016324	7.8886E-06	483.25064791239623	43.838	1.0519	43.927	43.683	44.735	0.088924					95	36	4	0	0	0	0.28068	1	8283	8283		36.127	3.8215	1	2086400			13871	4738	9104	9213	18961	18961					0.002897747979545784
NAILDLSVF	9	Unmodified	_NAILDLSVF_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2767639160156	2	496.276575	990.538597	0.263	0.00013052	0.1113	5.5234E-05	0.3743	0.00018576	496.27643398564373	91.209	0.50414	91.244	90.994	91.498	0.035446					31	17	2	0	0	0	0.088609	1	22745	22745		34.932	16.786	1	166230			13872	4997	9105	9214	18962	18962					0.04294938211717181
NAILVDTPL	9	Unmodified	_NAILVDTPL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2765197753906	2	478.276575	954.538597	-0.016958	-8.1104E-06	0.26819	0.00012827	0.25123	0.00012016	478.2766123400411	71.705	0.35896	71.705	71.53	71.889	0					19	12	2	0	0	0	0.03918	1	16934	16934		45.7	20.3	1	127930			13873	3738	9106	9215	18963	18963					0.0595093821170849
NAILVDTPL	9	Unmodified	_NAILVDTPL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.27716064453125	2	478.276575	954.538597	-0.055303	-2.645E-05	0.21652	0.00010356	0.16122	7.7106E-05	478.27657933355596	71.675	0.30217	71.733	71.542	71.844	0.058578					17	10	2	0	0	0	0.07372	1	16758	16758		38.176	18.919	1	112780			13874	3738	9106	9215	18964	18964					0.0595093821170849
NAILYETVL	9	Unmodified	_NAILYETVL_					0	0	0		ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF;ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENSG00000166747|ENST00000299980|AP1G1	ENSG00000166747|ENST00000299980|AP1G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.2891845703125	2	518.289682	1034.56481	0.41952	0.00021743	-0.1894	-9.8166E-05	0.23012	0.00011927	518.2894498766904	75.697	0.35616	75.697	75.504	75.86	0					23	17	2	0	0	0	0.020768	1	18158	18158		57.722	23.32	1	1004400			13875	4177	9107	9216	18965	18965					0.04891207383184337
NAILYETVL	9	Unmodified	_NAILYETVL_					0	0	0		ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF;ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENSG00000166747|ENST00000299980|AP1G1	ENSG00000166747|ENST00000299980|AP1G1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	518.289682	1034.56481	0.36749	0.00019046	-0.013853	-7.1796E-06	0.35363	0.00018329	518.289656641239	75.679	0.31866	75.723	75.546	75.865	0.044037	0.013208	7.2729E-05	NaN	57.722	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	881380			13876	4177	9107	9216							0.04891207383184337
NAIPVDTVL	9	Unmodified	_NAIPVDTVL_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.26904296875	2	471.26875	940.522947	0.034657	1.6333E-05	1.7005	0.0008014	1.7352	0.00081774	471.26970994574583	68.695	0.4949	68.757	68.559	69.054	0.062126					32	18	3	0	0	0	0.27929	1	15854	15854		9.3831	0	1	199120			13877	2670	9108	9217	18966	18966					0.05030651694653443
NAIVNCAELVT	11	Unmodified	_NAIVNCAELVT_					0	0	0		ENSG00000175567|ENST00000663595|UCP2	ENSG00000175567|ENST00000663595|UCP2	ENSG00000175567|ENST00000663595|UCP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.2794189453125	2	573.794806	1145.57506	0.23708	0.00013604	2.6718	0.001533	2.9088	0.0016691	573.7965823582618	95.692	0.27745	95.692	95.575	95.852	0					22	11	3	0	0	0	0.29809	1	24236	24236		21.59	1.1756	1	131830			13878	4629	9109	9218	18967	18967					0.008094470460946468
NAIVNCAELVT	11	Unmodified	_NAIVNCAELVT_					0	0	0		ENSG00000175567|ENST00000663595|UCP2	ENSG00000175567|ENST00000663595|UCP2	ENSG00000175567|ENST00000663595|UCP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.3260498046875	2	573.794806	1145.57506	0.25529	0.00014649	3.3527	0.0019238	3.608	0.0020703	573.7967604053819	95.646	0.28643	95.685	95.604	95.89	0.038872					16	12	2	0	0	0	0.3097	1	24067	24067		12.873	2.0487	1	129960			13879	4629	9109	9218	18968	18968					0.008094470460946468
NAKKHLLK	8	Unmodified	_NAKKHLLK_					0	0	0			REV__ENST00000510209.5_1_4:99916904-99957225:+|nuORF	REV__ENST00000510209.5_1_4:99916904-99957225:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.3062744140625	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.734	1	52.734	52.234	53.234	0								0	0	0	0.38822	1	11144	11144		2.5775	0	1		+		13880	12252	9110	9219	18969	18969					0.12525763159317194
NAMEDAQTL	9	Oxidation (M)	_NAM(Oxidation (M))EDAQTL_		NAM(1)EDAQTL		NAM(50)EDAQTL	0	0	1		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.71881103515625	2	504.718764	1007.42298	-0.027462	-1.3861E-05	-0.023603	-1.1913E-05	-0.051065	-2.5773E-05	504.7187472019238	34.867	1.0213	34.867	34.568	35.589	0					77	37	4	0	0	0	0.032232	1	5705	5705		49.527	30.27	1	220520			13881	5261	9111	9220	18970	18970		298			-0.08043953701428563
NAMEDAQTL	9	Oxidation (M)	_NAM(Oxidation (M))EDAQTL_		NAM(1)EDAQTL		NAM(42)EDAQTL	0	0	1		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7189025878906	2	504.718764	1007.42298	0.03652	1.8432E-05	0.07905	3.9898E-05	0.11557	5.8331E-05	504.7187526635493	34.766	0.86191	34.842	34.592	35.454	0.076244					80	37	3	0	0	0	0.054729	1	5570	5570		42.312	23.055	1	205750			13882	5261	9111	9220	18971	18971		298			-0.08043953701428563
NAMEDAQTL	9	Unmodified	_NAMEDAQTL_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7214050292969	2	496.721307	991.42806	0.15183	7.5417E-05	-0.32491	-0.00016139	-0.17308	-8.5974E-05	496.72108366520814	46.242	0.3743	46.242	46.009	46.384	0					22	12	2	0	0	0	0.11383	2	9159	9159;9211		29.437	18.638	1	102060			13883	5261	9111	9221	18972;18973	18972					-0.06799649838819732
NAMEDAQTL	9	Unmodified	_NAMEDAQTL_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.72137451171875	2	496.721307	991.42806	0.1646	8.1762E-05	-0.052337	-2.5997E-05	0.11227	5.5765E-05	496.72124475153015	46.137	0.33797	46.222	46.055	46.393	0.085621					25	11	3	0	0	0	0.11383	1	9009	9009		29.437	20.054	1	92109			13884	5261	9111	9221	18974	18974					-0.06799649838819732
NAPEFVQAL	9	Unmodified	_NAPEFVQAL_					0	0	0		PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant;ENSG00000113248|ENST00000231173|PCDHB15	PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7579650878906	2	494.758549	987.502546	0.030772	1.5225E-05	-0.32535	-0.00016097	-0.29458	-0.00014574	494.7583025090907	43.554	1.5126	43.554	43.296	44.808	0					132	53	5	0	0	0	0.32614	1	8711	8711		3.2813	0.28607	1	1885100			13885	1791	9112	9222	18975	18975					0.00829481034861601
NAQGLRYLI	9	Unmodified	_NAQGLRYLI_					0	0	0			REV__tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	REV__tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2827758789062	2	524.300916	1046.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.724	1	58.794	58.294	59.294	0.070477								0	0	0	0.16627	1	12833	12833		23.148	8.3102	1		+		13886	13287	9113	9223	18976	18976					0.06584851571460604
NAQKEIATL	9	Unmodified	_NAQKEIATL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2773132324219	2	494.277106	986.53966	0.32615	0.00016121	-0.15605	-7.713E-05	0.1701	8.4079E-05	494.2770558017189	36.507	1.3159	36.507	36.231	37.547	0					131	50	4	0	0	0	9.6107E-13	4	6250	6200;6250;6293;6336		181.69	88.525	1	1743000			13887	559	9114	9224	18977;18978;18979;18980	18978					0.04585152580614249
NAQKEIATL	9	Unmodified	_NAQKEIATL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2773132324219	2	494.277106	986.53966	0.31378	0.0001551	-0.015468	-7.6453E-06	0.29832	0.00014745	494.27711137379333	36.432	1.3084	36.514	36.259	37.567	0.081715					130	51	4	0	0	0	1.8205E-09	3	6094	6055;6094;6143		173.69	90.258	1	1418700			13888	559	9114	9224	18981;18982;18983	18982					0.04585152580614249
NASEDRLEL	9	Unmodified	_NASEDRLEL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7587280273438	2	523.759278	1045.504	-0.56833	-0.00029767	-0.58795	-0.00030795	-1.1563	-0.00060561	523.7590286206289	42.025	0.85249	42.025	41.773	42.626	0					74	29	4	0	0	0	0.0038428	2	7927	7883;7927		104.48	44.41	1	868340			13889	4608	9115	9225	18984;18985	18985					-0.01692929667046883
NASEDRLEL	9	Unmodified	_NASEDRLEL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7589721679688	2	523.759278	1045.504	-0.43724	-0.00022901	-0.31372	-0.00016431	-0.75095	-0.00039332	523.7591739751733	41.933	0.7817	42.023	41.816	42.598	0.089767					65	29	3	0	0	0	0.002813	3	7730	7730;7775;7847		110.79	41.688	1	698920			13890	4608	9115	9225	18986;18987;18988	18986					-0.01692929667046883
NASFFMGPM	9	Unmodified	_NASFFMGPM_					0	0	0			REV__ENST00000583155.1_1_1:192544922-192545060:+|nuORF	REV__ENST00000583155.1_1_1:192544922-192545060:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.77294921875	2	501.214606	1000.41466	0.18825	9.4355E-05	2.9174	0.0014623	3.1057	0.0015566	501.2159262351214	35.931	0.51785	36.009	35.791	36.309	0.078831					32	19	2	0	0	0	0.25579	1	5889	5889		4.3292	2.0265	1	38395	+		13891	8300	9116	9226	18989	18989					-0.08553179151761015
NASFFMGPM	9	Unmodified	_NASFFMGPM_					0	0	0			REV__ENST00000583155.1_1_1:192544922-192545060:+|nuORF	REV__ENST00000583155.1_1_1:192544922-192545060:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	501.214606	1000.41466	0.16058	8.0486E-05	2.7451	0.0013759	2.9056	0.0014563	501.216009701666	36.019	0.54122	36.019	35.836	36.377	0	0.0048534	-8.1607E-05	NaN	4.3292	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46430	+		13892	8300	9116	9226							-0.08553179151761015
NASQLITQR	9	Unmodified	_NASQLITQR_					0	0	0		ENST00000544888.5_1_12:7077022-7079603:-|nuORF;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2	ENST00000544888.5_1_12:7077022-7079603:-|nuORF	ENST00000544888.5_1_12:7077022-7079603:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.78564453125	2	515.78563	1029.55671	-0.044598	-2.3003E-05	0.26093	0.00013458	0.21633	0.00011158	515.7857241717453	32.502	0.78812	32.502	32.248	33.036	0					86	35	3	0	0	0	0.0044975	3	5044	5004;5044;5086		91.085	52.909	1	217340			13893	5574	9117	9227	18990;18991;18992	18991					0.04311073186408976
NASQLITQR	9	Unmodified	_NASQLITQR_					0	0	0		ENST00000544888.5_1_12:7077022-7079603:-|nuORF;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2	ENST00000544888.5_1_12:7077022-7079603:-|nuORF	ENST00000544888.5_1_12:7077022-7079603:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.78564453125	2	515.78563	1029.55671	-0.016541	-8.5317E-06	0.23799	0.00012275	0.22145	0.00011422	515.7856994303171	32.4	0.75555	32.474	32.288	33.043	0.07378					90	38	4	0	0	0	0.010553	3	4910	4869;4910;4946		65.474	31.072	1	197950			13894	5574	9117	9227	18993;18994;18995	18994					0.04311073186408976
NASRQEAKL	9	Unmodified	_NASRQEAKL_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7778625488281	2	508.777805	1015.54106	-0.39727	-0.00020212	0.066676	3.3923E-05	-0.33059	-0.0001682	508.7777984994616	18.184	0.29008	18.184	18.056	18.346	0					76	35	3	0	0	0	0.30757	1	1076	1076		5.7319	1.4026	1	52992			13895	1276	9118	9228	18996	18996					0.03390786669365298
NASTDYDL	8	Unmodified	_NASTDYDL_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000481985.5_1_22:39710087-39711482:-|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	449.6924133300781	2	449.693072	897.371591	-0.06168	-2.7737E-05	-1.0195	-0.00045845	-1.0812	-0.00048619	449.69245908526557	44.772	0.46868	44.772	44.606	45.075	0					27	16	2	0	0	0	0.53279	1	8789	8789		6.2058	2.2614	1	111090			13896	1182	9119	9229	18997	18997					-0.08119954403866814
NASTDYDL	8	Unmodified	_NASTDYDL_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000481985.5_1_22:39710087-39711482:-|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.6924133300781	2	449.693072	897.371591	-0.079984	-3.5968E-05	-0.73223	-0.00032928	-0.81221	-0.00036525	449.69256266767275	44.674	0.52439	44.761	44.564	45.089	0.087543					43	19	3	0	0	0	0.41706	2	8566	8566;8609		24.021	9.1823	1	135720			13897	1182	9119	9229	18998;18999	18998					-0.08119954403866814
NATAWFFE	8	Unmodified	_NATAWFFE_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.22418212890625	2	493.224342	984.434132	-0.014282	-7.0443E-06	-0.6141	-0.00030289	-0.62838	-0.00030993	493.22392177396677	32.943	0.47376	32.943	32.801	33.275	0					30	18	2	0	0	0	0.42348	1	5183	5183		23.148	0	1	69626	+		13898	8653	9120	9230	19000	19000					-0.05870763544999136
NATAWFFE	8	Unmodified	_NATAWFFE_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.22393798828125	2	493.224342	984.434132	0.0099546	4.9099E-06	-0.43234	-0.00021324	-0.42238	-0.00020833	493.22401337093294	32.873	0.43129	32.947	32.803	33.234	0.074322					29	17	2	0	0	0	0.42348	1	5033	5033		23.148	0	1	60061	+		13899	8653	9120	9230	19001	19001					-0.05870763544999136
NATAWFFE	8	Unmodified	_NATAWFFE_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.224342	984.434132	-0.014282	-7.0443E-06	-0.6141	-0.00030289	-0.62838	-0.00030993	493.22392177396677	32.943	0.47376	32.943	32.801	33.275	0	-0.0022413	-0.00010098	NaN	23.148	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69626	+		13900	8653	9120	9230							-0.05870763544999136
NATAWFFE	8	Unmodified	_NATAWFFE_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.224342	984.434132	0.0099546	4.9099E-06	-0.43234	-0.00021324	-0.42238	-0.00020833	493.22401337093294	32.873	0.43129	32.947	32.803	33.234	0.074322	0.0022413	7.8315E-05	NaN	23.148	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60061	+		13901	8653	9120	9230							-0.05870763544999136
NATNVEQSF	9	Unmodified	_NATNVEQSF_					0	0	0		nc|ENSG00000138069|P62820-3|RAB1A;nc|ENSG00000138069|P62820-2|RAB1A;ENSG00000138069|ENST00000409784|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.23260498046875	2	505.232896	1008.45124	-0.23991	-0.00012121	-0.67903	-0.00034307	-0.91894	-0.00046428	505.23207669575737	44.145	0.6448	44.145	43.773	44.418	0					41	21	3	0	0	0	0.0033402	2	8544	8535;8544		107.56	37.231	1	223370			13902	2887	9121	9231	19002;19003	19003					-0.052648877298452135
NATNVEQSF	9	Unmodified	_NATNVEQSF_					0	0	0		nc|ENSG00000138069|P62820-3|RAB1A;nc|ENSG00000138069|P62820-2|RAB1A;ENSG00000138069|ENST00000409784|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.2328186035156	2	505.232896	1008.45124	-0.060678	-3.0656E-05	-1.0389	-0.00052489	-1.0996	-0.00055555	505.23214477196933	44.083	0.81165	44.172	43.846	44.658	0.088921					51	27	3	0	0	0	0.00648	1	8386	8386		78.06	20.339	1	176110			13903	2887	9121	9231	19004	19004					-0.052648877298452135
NATPLTIER	9	Unmodified	_NATPLTIER_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000478045.5_1_7:44801192-44807219:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.782470703125	2	507.782556	1013.55056	0.10882	5.5255E-05	-0.064545	-3.2775E-05	0.044271	2.248E-05	507.7824441969102	39.004	0.60463	39.004	38.802	39.407	0					51	22	3	0	0	0	0.15837	1	6991	6991		34.932	6.4376	1	209610			13904	2184	9122	9232	19005	19005					0.04432554954905754
NATPLTIER	9	Unmodified	_NATPLTIER_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000478045.5_1_7:44801192-44807219:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.782470703125	2	507.782556	1013.55056	0.22214	0.0001128	-0.059066	-2.9993E-05	0.16307	8.2806E-05	507.7823384176585	38.894	0.52438	38.981	38.771	39.295	0.086884					53	20	4	0	0	0	0.18759	1	6835	6835		27.629	2.2295	1	181080			13905	2184	9122	9232	19006	19006					0.04432554954905754
NATRDFLL	8	Unmodified	_NATRDFLL_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2589416503906	2	475.258717	948.50288	-0.06981	-3.3178E-05	-0.23345	-0.00011095	-0.30326	-0.00014413	475.25854229257976	52.793	0.42015	52.793	52.555	52.975	0					24	14	2	0	0	0	0.30285	1	11152	11152		34.402	7.5181	1	116300			13906	1587	9123	9233	19007	19007					0.026569007547209367
NATRDFLL	8	Unmodified	_NATRDFLL_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2586975097656	2	475.258717	948.50288	0.045971	2.1848E-05	0.085432	4.0602E-05	0.1314	6.2451E-05	475.258590298106	52.711	0.43721	52.778	52.578	53.015	0.067173					28	17	3	0	0	0	0.48462	1	10995	10995		14.838	0	1	106320			13907	1587	9123	9233	19008	19008					0.026569007547209367
NAVAGESAL	9	Unmodified	_NAVAGESAL_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5;ENST00000470493.1_1_13:98645409-98652946:+|nuORF	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2139892578125	2	416.213975	830.413397	-0.11764	-4.8965E-05	0.2365	9.8434E-05	0.11885	4.9469E-05	416.21403371975254	40.684	0.51175	40.684	40.456	40.967	0					38	17	3	0	0	0	0.017478	1	7498	7498		60.074	22.1	1	159520			13908	677	9124	9234	19009	19009					-0.008593539246589899
NAVAGESAL	9	Unmodified	_NAVAGESAL_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5;ENST00000470493.1_1_13:98645409-98652946:+|nuORF	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.21435546875	2	416.213975	830.413397	-0.32993	-0.00013732	0.73628	0.00030645	0.40635	0.00016913	416.2141786903477	40.551	0.54408	40.641	40.437	40.981	0.089642					47	21	3	0	0	0	0.098463	1	7325	7325		32.786	8.7651	1	118950			13909	677	9124	9234	19010	19010					-0.008593539246589899
NAVEQDYRL	9	Unmodified	_NAVEQDYRL_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2740478515625	2	554.275095	1106.53564	-0.46529	-0.0002579	-0.75215	-0.0004169	-1.2174	-0.0006748	554.2745012267154	41.773	0.4214	41.773	41.609	42.03	0					26	14	3	0	0	0	0.09187	1	7855	7855		34.222	21.981	1	80601			13910	4882	9125	9235	19011	19011					-0.013369369131169151
NAVEQDYRL	9	Unmodified	_NAVEQDYRL_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2734375	2	554.275095	1106.53564	-0.17994	-9.9737E-05	-0.75987	-0.00042118	-0.93982	-0.00052092	554.2746110322778	41.722	0.40392	41.812	41.644	42.048	0.089767					22	15	2	0	0	0	0.1646	1	7677	7677		22.658	9.1502	1	78680			13911	4882	9125	9235	19012	19012					-0.013369369131169151
NAVHLYELL	9	Unmodified	_NAVHLYELL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.2954711914062	2	536.295299	1070.57605	0.78656	0.00042183	-0.45671	-0.00024493	0.32985	0.0001769	536.2950665211646	65.996	0.61745	65.996	65.791	66.408	0					40	21	3	0	0	0	0.0569	1	15186	15186		41.84	12.758	1	469280			13912	4744	9126	9236	19013	19013					0.04358029477339187
NAVHLYELL	9	Unmodified	_NAVHLYELL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.8037719726562	2	536.295299	1070.57605	0.79617	0.00042698	-0.50326	-0.0002699	0.29291	0.00015708	536.2951017883694	65.986	0.58076	66.053	65.818	66.399	0.066872					42	21	3	0	0	0	0.1789	1	15046	15046		29.082	9.8246	1	402440			13913	4744	9126	9236	19014	19014					0.04358029477339187
NAVLFETVL	9	Unmodified	_NAVLFETVL_					0	0	0		ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556152.1_1_14:24033689-24033869:-|nuORF;ENST00000465445.6_1_14:24033375-24035332:-|nuORF;ENST00000460049.6_1_14:24033375-24036327:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.28460693359375	2	503.2844	1004.55425	0.51008	0.00025671	-0.14208	-7.1506E-05	0.368	0.00018521	503.2842469213566	83.616	0.65029	83.616	83.401	84.051	0					46	21	3	0	0	0	0.0081278	2	20563	20563;20613		72.968	30.873	1	532690			13914	5561	9127	9237	19015;19016	19015					0.0521522472874949
NAVLFETVL	9	Unmodified	_NAVLFETVL_					0	0	0		ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556152.1_1_14:24033689-24033869:-|nuORF;ENST00000465445.6_1_14:24033375-24035332:-|nuORF;ENST00000460049.6_1_14:24033375-24036327:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.2845458984375	2	503.2844	1004.55425	0.23561	0.00011858	0.097662	4.9152E-05	0.33328	0.00016773	503.28438519129077	83.607	0.5968	83.628	83.414	84.01	0.021744					47	20	3	0	0	0	0.0040275	2	20396	20396;20446		103.35	55.008	1	631410			13915	5561	9127	9237	19017;19018	19017					0.0521522472874949
NAVYLIDAF	9	Unmodified	_NAVYLIDAF_					0	0	0			REV__ENSG00000146410|ENST00000420702|MTFR2	REV__ENSG00000146410|ENST00000420702|MTFR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.27587890625	2	513.26875	1024.52295	0.29628	0.00015207	1.2524	0.00064281	1.5487	0.00079488	513.2684365654316	83.653	0.42125	83.675	83.527	83.948	0.021744					36	14	3	0	0	0	0.25979	1	20424	20424		11.64	2.2929	1	190070	+		13916	9540	9128	9238	19019	19019					0.011666516946661432
NAVYTFETL	9	Unmodified	_NAVYTFETL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2637329101562	2	529.263665	1056.51278	0.47028	0.0002489	-0.004584	-2.4261E-06	0.46569	0.00024647	529.2635584514546	70.928	0.70757	70.928	70.708	71.415	0					49	24	4	0	0	0	8.9172E-06	2	16677	16677;16733		149.91	79.198	1	541160			13917	2816	9129	9239	19020;19021	19020					-0.013219560305742561
NAVYTFETL	9	Unmodified	_NAVYTFETL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.263916015625	2	529.263665	1056.51278	0.61853	0.00032736	-0.064431	-3.4101E-05	0.5541	0.00029326	529.2635757890009	70.855	0.75349	70.914	70.71	71.464	0.058578					41	27	2	0	0	0	0.0016252	2	16500	16500;16545		118.07	57.679	1	324040			13918	2816	9129	9239	19022;19023	19022					-0.013219560305742561
NCKTDKVTL	9	Unmodified	_NCKTDKVTL_					0	0	0			REV__nc|ENSG00000284762|O95263-5|PDE8B	REV__nc|ENSG00000284762|O95263-5|PDE8B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2814025878906	2	511.270967	1020.52738	0.31953	0.00016336	0.3901	0.00019945	0.70963	0.00036281	511.27118114022335	83.923	0.33787	83.945	83.751	84.089	0.021744					17	11	2	0	0	0	0.23975	1	20510	20510		14.838	0	1	56899	+		13919	8735	9130	9240	19024	19024					0.017937928459332397
NCPDSLLSLAN	11	Unmodified	_NCPDSLLSLAN_					0	0	0		ENST00000471645.5_1_1:214454597-214504559:+|nuORF	ENST00000471645.5_1_1:214454597-214504559:+|nuORF	ENST00000471645.5_1_1:214454597-214504559:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7756958007812	2	573.776613	1145.53867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.009	1	27.009	26.509	27.509	0								0	0	0	0.34212	1	3424	3424		0	0	1				13920	6674	9131	9241	19025	19025					-0.02827429850549379
NCVDDELNLI	10	Unmodified	_NCVDDELNLI_					0	0	0			REV__ENST00000588207.1_1_18:57637691-57638603:+|nuORF	REV__ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.8192749023438	2	574.268621	1146.52269	0.50446	0.0002897	1.1799	0.00067757	1.6844	0.00096727	574.77144169448	69.692	0.18703	69.692	69.574	69.761	0					6	5	2	0	0	0	0.2803	1	16294	16294		29.082	11.969	1	39568	+		13921	8051	9132	9242	19026	19026					-0.04471136087522609
NCVSYYLFFL	10	Unmodified	_NCVSYYLFFL_					0	0	0			REV__ENST00000382850.8_1_18:56068093-56068183:+|nuORF	REV__ENST00000382850.8_1_18:56068093-56068183:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3038330078125	2	634.804642	1267.59473	0.07723	4.9026E-05	3.3318	0.002115	3.409	0.002164	634.8082776882873	53.026	0.24282	53.026	52.945	53.188	0					9	8	2	0	0	0	0.31829	1	11229	11229		1.8442	0.36234	1	65476	+		13922	11677	9133	9243	19027	19027					-0.02836176943128521
NDAVEEMVCV	10	Oxidation (M)	_NDAVEEM(Oxidation (M))VCV_		NDAVEEM(1)VCV		NDAVEEM(60)VCV	0	0	1		TTC12-LUC7L2|1|fusion;ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12	TTC12-LUC7L2|1|fusion	TTC12-LUC7L2|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7337036132812	2	562.733557	1123.45256	0.50025	0.00028151	-0.21511	-0.00012105	0.28515	0.00016046	562.7334139840929	60.197	1.1996	60.197	59.989	61.189	0					100	43	4	0	0	0	0.041153	1	13427	13427		60.074	25.672	1	1322500			13923	3396	9134	9244	19028	19028		218			-0.10422757747619471
NDEDLGMKT	9	Unmodified	_NDEDLGMKT_					0	0	0			REV__nc|ENSG00000133794|O00327-6|BMAL1	REV__nc|ENSG00000133794|O00327-6|BMAL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.798095703125	2	511.726589	1021.43863	0.33001	0.00016888	2.4257	0.0012413	2.7557	0.0014102	511.72826958283497	37.937	0.52577	38.021	37.654	38.18	0.084476					24	18	2	0	0	0	0.25875	1	6525	6525		1.8442	0	1	28350	+		13924	9154	9135	9245	19029	19029					-0.07123667184373517
NDEDLGMKT	9	Unmodified	_NDEDLGMKT_					0	0	0			REV__nc|ENSG00000133794|O00327-6|BMAL1	REV__nc|ENSG00000133794|O00327-6|BMAL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	511.726589	1021.43863	0.32151	0.00016453	1.6518	0.00084529	1.9734	0.0010098	511.7274145524855	38.016	0.42483	38.016	37.758	38.182	0	-0.002528	-0.00028864	NaN	1.8442	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25165	+		13925	9154	9135	9245							-0.07123667184373517
NDFKNYSAF	9	Unmodified	_NDFKNYSAF_					0	0	0			REV__nc|ENSG00000103546|P23975-3|SLC6A2	REV__nc|ENSG00000103546|P23975-3|SLC6A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2671508789062	2	553.251089	1104.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.316	1	32.39	31.89	32.89	0.07378								0	0	0	0.28724	1	4864	4864		1.6526	0	1		+		13926	8484	9136	9246	19030	19030					-0.06044010833147695
NDFLTGVF	8	Unmodified	_NDFLTGVF_					0	0	0		ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;ENSG00000169169|ENST00000598293|CPT1C;ENST00000600944.5_1_19:50195509-50200723:+|nuORF;ENST00000295404.9_1_19:50194996-50204826:+|nuORF;nc|ENSG00000169169|Q8TCG5-2|CPT1C	ENST00000599023.5_1_19:50195509-50213852:+|nuORF	ENST00000599023.5_1_19:50195509-50213852:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.72698974609375	2	456.726718	911.438883	0.32682	0.00014927	0.079877	3.6482E-05	0.4067	0.00018575	456.7267349422037	59.504	0.41105	59.504	59.308	59.719	0					32	16	3	0	0	0	0.50159	1	13214	13214		12.532	0	1	207580			13927	4326	9137	9247	19031	19031					-0.020378794022235525
NDGDKGFLP	9	Unmodified	_NDGDKGFLP_					0	0	0		nc|ENSG00000115155|Q9HC10-5|OTOF;ENSG00000115155|ENST00000272371|OTOF	nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-5|OTOF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7141418457031	2	481.732532	961.45051	-0.18596	-8.9582E-05	-2.2596	-0.0010885	-2.4456	-0.0011781	481.73117391764913	39.351	0.29847	39.351	39.162	39.461	0					13	10	2	0	0	0	0.31496	2	7070	7070;7119		4.756	1.8668	1	17257			13928	1880	9138	9248	19032;19033	19032					-0.03175682378889633
NDIAWDNQDL	10	Unmodified	_NDIAWDNQDL_					0	0	0			REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2670288085938	2	602.267467	1202.52038	0.83099	0.00050048	-0.272	-0.00016382	0.55899	0.00033666	602.2672637406736	85.21	0.42702	85.233	85.063	85.49	0.023125					31	17	2	0	0	0	0.31645	1	20921	20921		10.151	0	1	280870	+		13929	10789	9139	9249	19034	19034					-0.07277848500962136
NDITFSYLF	9	Unmodified	_NDITFSYLF_					0	0	0			REV__nc|ENSG00000111728|Q92185-2|ST8SIA1	REV__nc|ENSG00000111728|Q92185-2|ST8SIA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2715454101562	2	560.27149	1118.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.015	1	71.015	70.515	71.515	0								0	0	0	0.19239	1	16715	16715		19.257	0	1		+		13930	8694	9140	9250	19035	19035					-0.02609669513526569
NDPYCCFF	8	Unmodified	_NDPYCCFF_					0	0	0			REV__ENST00000428388.6_1_6:32135933-32136035:+|nuORF	REV__ENST00000428388.6_1_6:32135933-32136035:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2641296386719	2	504.683139	1007.35172	0.38089	0.00019223	-0.31047	-0.00015669	0.070424	3.5542E-05	504.68294859745606	88.24	0.52076	88.24	88.085	88.605	0					31	19	2	0	0	0	0.3576	1	21969	21969		2.8892	2.0956	1	290590	+		13931	11840	9141	9251	19036	19036					-0.15165744939815795
NDRDCNVLLI	10	Unmodified	_NDRDCNVLLI_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.800048828125	2	587.79788	1173.58121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.92	1	30.994	30.494	31.494	0.073782								0	0	0	0.33988	1	4447	4447		0.35063	0.35063	1		+		13932	9824	9142	9252	19037	19037					0.0013596527765002975
NDSLYLYI	8	Unmodified	_NDSLYLYI_					0	0	0			REV__nc|ENSG00000100399|Q6NUI6-2|CHADL	REV__nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7531433105469	2	500.752933	999.491313	0.18487	9.2572E-05	-0.19657	-9.8431E-05	-0.0117	-5.8589E-06	500.75282147499775	86.977	0.74201	87.004	86.838	87.58	0.027573					69	31	3	0	0	0	0.52924	1	21529	21529		8.5933	0	1	342460	+		13933	8393	9143	9253	19038	19038					-0.008453410593006083
NDTRPSWC	8	Unmodified	_NDTRPSWC_					0	0	0		ENST00000539777.5_1_1:168054037-168054433:-|nuORF	ENST00000539777.5_1_1:168054037-168054433:-|nuORF	ENST00000539777.5_1_1:168054037-168054433:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7074279785156	2	489.708534	977.402514	0.048206	2.3607E-05	-1.6451	-0.00080563	-1.5969	-0.00078202	489.70764264820934	35.194	0.47331	35.273	35.122	35.596	0.078831					33	18	3	0	0	0	0.53557	1	5775	5775		4.3292	0.73274	1	79482			13934	7059	9144	9254	19039	19039					-0.08709079570598988
NDVDVGVYQLM	11	Unmodified	_NDVDVGVYQLM_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.7931518554688	2	626.797546	1251.58054	0.31189	0.00019549	-3.3253	-0.0020843	-3.0134	-0.0018888	627.2985981159878	70.751	0.38139	70.751	70.555	70.937	0					20	13	2	0	0	0	0.39356	1	16613	16613		5.7834	0.05158	1	97033			13935	3329	9145	9255	19040	19040					-0.035188741620686415
NDVLLSHMIT	10	Unmodified	_NDVLLSHMIT_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.79736328125	2	571.797349	1141.58014	0.54478	0.00031151	0.31471	0.00017995	0.8595	0.00049146	571.7974610609874	64.72	1.3648	64.72	64.457	65.822	0					124	49	4	0	0	0	0.35104	1	15092	15092		17.113	0.1706	1	1158900			13936	5224	9146	9256	19041	19041					0.015017509087101644
NDVLRKIELF	10	Unmodified	_NDVLRKIELF_					0	0	0			REV__tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	REV__tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22039794921875	3	416.243317	1245.70812	0.047026	1.9574E-05	0.10449	4.3492E-05	0.15151	6.3066E-05	416.57790406847494	49.775	1.395	49.848	49.4	50.795	0.07312					60	49	2	0	0	0	0.31821	1	10173	10173		1.4551	0	1	39877	+		13937	13297	9147	9257	19042	19042					0.09509634494247621
NDYHIPVL	8	Unmodified	_NDYHIPVL_					0	0	0		tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7532653808594	2	485.753267	969.491981	-0.05939	-2.8849E-05	0.45256	0.00021983	0.39317	0.00019098	485.7534598314807	50.984	0.49528	50.984	50.539	51.034	0					33	16	3	0	0	0	0.53026	1	10584	10584		7.9102	7.9102	1	177970			13938	13500	9148	9258	19043	19043					0.006014983804220719
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;MYH10|p.K106R|1|0.45|ENSG00000133026|chr17:8622930-8622930|T/C|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2873229980469	2	498.759081	995.503609	-0.15823	-7.8917E-05	0.39623	0.00019762	0.23801	0.00011871	498.7591726915821	45.443	0.43699	45.443	45.238	45.675	0					22	14	2	0	0	0	0.23347	1	8969	8969		18.373	8.99	1	131220			13939	1188;2625	9149	9259	19044	19044					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;MYH10|p.K106R|1|0.45|ENSG00000133026|chr17:8622930-8622930|T/C|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.28753662109375	2	498.759081	995.503609	0.098933	4.9344E-05	0.12861	6.4147E-05	0.22755	0.00011349	498.7590225883187	45.33	0.43421	45.417	45.237	45.671	0.087543					27	16	2	0	0	0	0.22821	1	8749	8749		19.362	2.249	1	116840			13940	1188;2625	9149	9259	19045	19045					0.005676954037653559
NEAVGGERMG	10	Unmodified	_NEAVGGERMG_					0	0	0		ENST00000530472.5_2_1:145076055-145076121:-|nuORF	ENST00000530472.5_2_1:145076055-145076121:-|nuORF	ENST00000530472.5_2_1:145076055-145076121:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7583923339844	2	510.232373	1018.45019	-0.014707	-7.504E-06	-0.18953	-9.6702E-05	-0.20423	-0.00010421	510.2322508204786	23.736	0.33105	23.836	23.695	24.026	0.099739					40	30	2	0	0	0	0.31824	1	2344	2344		2.4985	0.65425	1	30578			13941	7022	9150	9260	19046	19046					-0.05829425370393437
NEDIGLATAF	10	Unmodified	_NEDIGLATAF_					0	0	0		ENST00000601163.1_1_19:8661189-8662174:-|nuORF;nc|ENSG00000142303|Q9H324|ADAMTS10;ENSG00000142303|ENST00000597188|ADAMTS10	ENST00000601163.1_1_19:8661189-8662174:-|nuORF	ENST00000601163.1_1_19:8661189-8662174:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7792358398438	2	525.758746	1049.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.241	1	86.266	85.766	86.766	0.025169								0	0	0	0.33092	1	21205	21205		10.824	0	1				13942	3099	9151	9261	19047	19047					-0.01983144035943951
NEDNGIIKAF	10	Unmodified	_NEDNGIIKAF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7855834960938	2	560.785296	1119.55604	0.32624	0.00018295	0.17782	9.9718E-05	0.50406	0.00028267	560.7854170202544	53.306	0.51955	53.306	53.139	53.659	0					42	21	3	0	0	0	0.00040827	1	11322	11322		97.741	20.916	1	241000			13943	4585	9152	9262	19048	19048					0.0010423374671972852
NEDNGIIKAF	10	Unmodified	_NEDNGIIKAF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7854614257812	2	560.785296	1119.55604	0.51152	0.00028685	0.34676	0.00019446	0.85828	0.00048131	560.785550948381	53.263	0.42838	53.328	53.169	53.597	0.06543					38	21	3	0	0	0	0.010985	1	11171	11171		75.571	7.7324	1	183410			13944	4585	9152	9262	19049	19049					0.0010423374671972852
NEDPKEEL	8	Unmodified	_NEDPKEEL_					0	0	0			REV__nc|ENSG00000275066|Q9UMZ2-7|SYNRG	REV__nc|ENSG00000275066|Q9UMZ2-7|SYNRG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.741943359375	2	487.227279	972.440005	0.011831	5.7644E-06	-0.094039	-4.5818E-05	-0.082207	-4.0054E-05	487.2272008088709	48.665	0.60813	48.665	48.424	49.032	0					43	20	3	0	0	0	0.4433	1	9856	9856		20.454	1.0146	1	311480	+		13945	12913	9153	9263	19050	19050					-0.047317098239886946
NEDPSWPYFE	10	Unmodified	_NEDPSWPYFE_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.2639770507812	2	642.264393	1282.51423	0.49119	0.00031547	1.0704	0.00068748	1.5616	0.001003	642.2649922144797	98.423	0.62003	98.423	98.137	98.757	0					91	32	4	0	0	0	0.46083	1	25152	25152		2.7352	0.23671	1	585750	+		13946	9116	9154	9264	19051	19051					-0.1157236673245734
NEDTYEII	8	Unmodified	_NEDTYEII_					0	0	0		tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1	tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1	tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7717590332031	2	498.729655	995.444756	0.14725	7.3436E-05	-0.39941	-0.0001992	-0.25216	-0.00012576	498.7298120762125	48.996	0.4475	49.073	48.956	49.404	0.076603					19	16	2	0	0	0	0.3576	1	9864	9864		4.756	0	1	32551			13947	13733	9155	9265	19052	19052					-0.053148256812278305
NEECDQNWY	9	Unmodified	_NEECDQNWY_					0	0	0		nc|ENSG00000177885|P62993-2|GRB2;ENSG00000177885|ENST00000316804|GRB2	nc|ENSG00000177885|P62993-2|GRB2	nc|ENSG00000177885|P62993-2|GRB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.8135986328125	3	400.813594	1199.41895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.46	1	116.47	115.97	116.97	0.013062								0	0	0	0.29525	1	29539	29539		0	0	1				13948	4721	9156	9266	19053	19053					-0.17278043195142345
NEEQPHELSP	10	Unmodified	_NEEQPHELSP_					0	0	0			REV__nc|ENSG00000137275|Q13546-2|RIPK1	REV__nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2675170898438	2	590.267467	1178.52038	-0.016762	-9.8939E-06	0.19748	0.00011657	0.18072	0.00010667	590.2674964257365	31.97	0.68522	31.97	31.676	32.362	0					70	26	3	0	0	0	0.45794	3	4915	4830;4915;4966		3.2813	0	1	103160	+		13949	9272	9157	9267	19054;19055;19056	19055					-0.06173848500952772
NEEQPHELSP	10	Unmodified	_NEEQPHELSP_					0	0	0			REV__nc|ENSG00000137275|Q13546-2|RIPK1	REV__nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2675170898438	2	590.267467	1178.52038	0.086191	5.0876E-05	0.037089	2.1892E-05	0.12328	7.2768E-05	590.2674168272519	31.929	0.67477	32.002	31.733	32.408	0.073782					70	30	3	0	0	0	0.46827	3	4704	4704;4791;4842		1.3295	0	1	98234	+		13950	9272	9157	9267	19057;19058;19059	19057					-0.06173848500952772
NEFAHNFNI	9	Unmodified	_NEFAHNFNI_					0	0	0			REV__MID2|p.D377H|1|0.69|ENSG00000080561|chrX:107916057-107916057|G/C|missense_variant	REV__MID2|p.D377H|1|0.69|ENSG00000080561|chrX:107916057-107916057|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2567138671875	2	553.256705	1104.49886	0.31636	0.00017503	-0.19228	-0.00010638	0.12408	6.8649E-05	553.2565543064459	50.295	0.51989	50.295	50.105	50.624	0					38	18	3	0	0	0	0.27929	1	10412	10412		9.3831	0	1	172350	+		13951	12735	9158	9268	19060	19060					-0.04921188739012905
NEFAHNFNI	9	Unmodified	_NEFAHNFNI_					0	0	0			REV__MID2|p.D377H|1|0.69|ENSG00000080561|chrX:107916057-107916057|G/C|missense_variant	REV__MID2|p.D377H|1|0.69|ENSG00000080561|chrX:107916057-107916057|G/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	553.256705	1104.49886	0.47833	0.00026464	-0.44769	-0.00024769	0.030635	1.6949E-05	553.2564532075036	50.246	0.37461	50.319	50.125	50.5	0.07312	0.012171	-0.00019087	NaN	9.3831	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223240	+		13952	12735	9158	9268							-0.04921188739012905
NEFDKRFF	8	Unmodified	_NEFDKRFF_					0	0	0		nc|ENSG00000016402|Q9UHF4-2|IL20RA;nc|ENSG00000016402|Q9UHF4-3|IL20RA;ENSG00000016402|ENST00000316649|IL20RA	nc|ENSG00000016402|Q9UHF4-2|IL20RA	nc|ENSG00000016402|Q9UHF4-2|IL20RA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2393798828125	2	551.769448	1101.52434	0.5306	0.00029277	-2.6119	-0.0014412	-2.0813	-0.0011484	551.7685174164642	62.766	0.10633	62.838	62.777	62.884	0.072701					6	3	2	0	0	0	0.35759	1	14072	14072		9.3474	1.4373	1	52606			13953	462	9159	9269	19061	19061					-0.022357142165674304
NEFELYYR	8	Unmodified	_NEFELYYR_					0	0	0			REV__tr|U7SYD1|U7SYD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00972PE=4SV=1	REV__tr|U7SYD1|U7SYD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00972PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2802124023438	2	567.266739	1132.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.434	1	73.487	72.987	73.987	0.052574								0	0	0	0.3878	1	17300	17300		14.838	2.3067	1		+		13954	13232	9160	9270	19062	19062					-0.04203437799060339
NEFPDELEI	9	Unmodified	_NEFPDELEI_					0	0	0			REV__tr|U7SSC0|U7SSC0_FUSNUChaperoninGroELOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groELPE=3SV=1	REV__tr|U7SSC0|U7SSC0_FUSNUChaperoninGroELOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groELPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2564086914062	2	553.256037	1104.49752	0.47833	0.00026464	0.76097	0.00042101	1.2393	0.00068565	553.2564532075036	50.246	0.37461	50.319	50.125	50.5	0.07312					29	12	3	0	0	0	0.27929	1	10246	10246		9.3831	0.63772	1	223240	+		13955	13145	9161	9271	19063	19063					-0.05054867618446224
NEGSLVWEV	9	Unmodified	_NEGSLVWEV_					0	0	0		ENST00000373573.7_1_X:71792621-71792867:-|nuORF	ENST00000373573.7_1_X:71792621-71792867:-|nuORF	ENST00000373573.7_1_X:71792621-71792867:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7093505859375	2	516.753464	1031.49238	-0.096925	-5.0086E-05	2.8804	0.0014885	2.7835	0.0014384	516.7547995392836	27.637	0.27747	27.637	27.581	27.859	0					29	20	2	0	0	0	0.24791	1	3609	3609		10.074	2.1638	1	41679			13956	6226	9162	9272	19064	19064					-0.022111266903721116
NEHCLKNFD	9	Unmodified	_NEHCLKNFD_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;ENST00000431872.1_1_9:68357853-68358255:-|nuORF;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.829833984375	2	560.248023	1118.48149	0.7496	0.00041996	1.4985	0.00083953	2.2481	0.0012595	560.749147108881	80.888	0.6983	80.912	80.531	81.229	0.023605					28	23	2	0	0	0	0.2446	1	19484	19484		11.64	0	1	156860			13957	4205	9163	9273	19065	19065					-0.07300852336311436
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.8726501464844	3	433.53857	1297.59388	0.57452	0.00024908	-0.80956	-0.00035097	-0.23504	-0.0001019	433.53817613725215	62.747	0.36629	62.747	62.575	62.941	0					20	12	3	0	0	0	0.34675	1	14200	14200		17.572	12.856	1	134350			13958	2398	9164	9274	19066	19066					-0.04301300058477864
NEIWPIYYFI	10	Unmodified	_NEIWPIYYFI_					0	0	0			REV__ENSG00000258223|ENST00000547058|PRSS58	REV__ENSG00000258223|ENST00000547058|PRSS58	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2331237792969	3	453.232418	1356.67542	0.0036382	1.649E-06	1.278	0.00057925	1.2817	0.00058089	453.2329655091082	43.681	0.39193	43.681	43.521	43.913	0					25	14	3	0	0	0	0.44671	1	8420	8420		5.4027	1.2861	1	72744	+		13959	11103	9165	9275	19067	19067					0.011354273714005103
NEIWPIYYFI	10	Unmodified	_NEIWPIYYFI_					0	0	0			REV__ENSG00000258223|ENST00000547058|PRSS58	REV__ENSG00000258223|ENST00000547058|PRSS58	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2333984375	3	453.232418	1356.67542	-0.11175	-5.0647E-05	1.7502	0.00079327	1.6385	0.00074262	453.23321026935326	43.606	0.28608	43.695	43.532	43.818	0.088924					17	10	2	0	0	0	0.44671	1	8253	8253		5.4027	1.2861	1	83213	+		13960	11103	9165	9275	19068	19068					0.011354273714005103
NEIWPIYYFI	10	Unmodified	_NEIWPIYYFI_					0	0	0			REV__ENSG00000258223|ENST00000547058|PRSS58	REV__ENSG00000258223|ENST00000547058|PRSS58	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	453.232418	1356.67542	-0.11175	-5.0647E-05	1.7502	0.00079327	1.6385	0.00074262	453.23321026935326	43.606	0.28608	43.695	43.532	43.818	0.088924	0.0068544	0.00023861	NaN	5.4027	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83213	+		13961	11103	9165	9275							0.011354273714005103
NEIYQSFSQL	10	Unmodified	_NEIYQSFSQL_					0	0	0			REV__ENSG00000115504|ENST00000431489|EHBP1	REV__ENSG00000115504|ENST00000431489|EHBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.79443359375	2	614.79586	1227.57717	-0.19819	-0.00012185	-2.2463	-0.001381	-2.4445	-0.0015029	614.7946921830112	49.51	0.50785	49.51	49.314	49.822	0					41	17	4	0	0	0	0.27736	1	10157	10157		24.991	6.6179	1	235400	+		13962	8788	9166	9276	19069	19069					-0.027518009444293057
NEIYQSFSQL	10	Unmodified	_NEIYQSFSQL_					0	0	0			REV__ENSG00000115504|ENST00000431489|EHBP1	REV__ENSG00000115504|ENST00000431489|EHBP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	614.79586	1227.57717	-0.19819	-0.00012185	-2.2463	-0.001381	-2.4445	-0.0015029	614.7946921830112	49.51	0.50785	49.51	49.314	49.822	0	-0.0082163	9.3039E-05	NaN	24.991	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235400	+		13963	8788	9166	9276							-0.027518009444293057
NEIYQSFSQL	10	Unmodified	_NEIYQSFSQL_					0	0	0			REV__ENSG00000115504|ENST00000431489|EHBP1	REV__ENSG00000115504|ENST00000431489|EHBP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.79586	1227.57717	-0.16758	-0.00010303	-2.3544	-0.0014475	-2.5219	-0.0015505	614.7944193017305	49.45	0.41053	49.527	49.359	49.77	0.076607	0.0082163	-3.9846E-05	NaN	24.991	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191490	+		13964	8788	9166	9276							-0.027518009444293057
NEKKKLMTQF	10	Unmodified	_NEKKKLMTQF_					0	0	0			REV__ENST00000487556.5_1_1:43300740-43305721:+|nuORF	REV__ENST00000487556.5_1_1:43300740-43305721:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.9162902832031	3	422.900674	1265.68019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.08	1	89.08	88.58	89.58	0								0	0	0	0.33869	1	22223	22223		1.7423	0.41263	1		+		13965	12128	9167	9277	19070	19070					0.05797988242534302
NEKKKLMTQF	10	Unmodified	_NEKKKLMTQF_					0	0	0			REV__ENST00000487556.5_1_1:43300740-43305721:+|nuORF	REV__ENST00000487556.5_1_1:43300740-43305721:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.9162292480469	3	422.900674	1265.68019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.877	1	88.91	88.41	89.41	0.032257								0	0	0	0.33869	1	22002	22002		1.7423	0.28716	1		+		13966	12128	9167	9277	19071	19071					0.05797988242534302
NEKYLVFHC	9	Unmodified	_NEKYLVFHC_					0	0	0			REV__ENSG00000091127|ENST00000469408|PUS7	REV__ENSG00000091127|ENST00000469408|PUS7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.33447265625	2	576.778959	1151.54336	0.19477	0.00011234	3.177	0.0018325	3.3718	0.0019448	576.7803585873233	48.821	0.53891	48.821	48.656	49.195	0					23	18	2	0	0	0	0.24366	1	9997	9997		13.042	2.2185	1	122230	+		13967	8316	9168	9278	19072	19072					-0.02634500917179139
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	ENST00000586212.1_1_19:3532513-3533660:+|nuORF	ENST00000586212.1_1_19:3532513-3533660:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.24273681640625	2	510.243264	1018.47197	0.28116	0.00014346	1.8927	0.00096574	2.1739	0.0011092	510.24400118001915	37.834	0.7649	37.834	37.364	38.129	0					44	26	3	0	0	0	0.14444	2	6543	6543;6592		24.991	9.7425	1	96435			13968	1461	9169	9279	19073;19074	19073					-0.03652297350186018
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	ENST00000586212.1_1_19:3532513-3533660:+|nuORF	ENST00000586212.1_1_19:3532513-3533660:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.24346923828125	2	510.243264	1018.47197	0.28324	0.00014452	0.29311	0.00014956	0.57635	0.00029408	510.24320745121764	37.421	0.52742	37.505	37.374	37.901	0.084476					29	17	3	0	0	0	0.13341	1	6404	6404		26.268	8.1218	1	68229			13969	1461	9169	9279	19075	19075					-0.03652297350186018
NENDIITHF	9	Unmodified	_NENDIITHF_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2251586914062	2	551.76182	1101.50909	0.6173	0.0003406	0.52126	0.00028761	1.1386	0.00062821	551.7615507043568	53.744	0.16048	53.809	53.762	53.922	0.06543					9	5	2	0	0	0	0.25699	1	11315	11315		3.5965	1.7523	1	62975			13970	1751	9170	9280	19076	19076					-0.03760625804443407
NEPDEIWDD	9	Unmodified	_NEPDEIWDD_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7255249023438	2	566.725101	1131.43565	0.18838	0.00010676	0.55904	0.00031682	0.74742	0.00042358	566.7253353595504	36.978	1.0948	36.978	36.663	37.758	0					63	40	2	0	0	0	0.33849	1	6358	6358		1.6526	1.0511	1	29855			13971	5584	9171	9281	19077	19077					-0.12481219037567826
NEPGAVGAASF	11	Unmodified	_NEPGAVGAASF_					0	0	0			REV__ENST00000506800.5_1_13:36801340-36814747:-|nuORF	REV__ENST00000506800.5_1_13:36801340-36814747:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.233154296875	2	510.243264	1018.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.881	1	41.971	41.471	42.471	0.089764								0	0	0	0.19725	1	7733	7733		27.629	1.2875	1		+		13972	12229	9172	9282	19078	19078					-0.03652297350186018
NEPRRRRYNF	10	Unmodified	_NEPRRRRYNF_					0	0	0			REV__ENSG00000065978|ENST00000321358|YBX1	REV__ENSG00000065978|ENST00000321358|YBX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.58233642578125	3	469.916597	1406.72796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.1	1	59.1	58.6	59.6	0								0	0	0	0.33855	1	13081	13081		1.9064	0	1		+		13973	8106	9173	9283	19079	19079					0.04086823277611984
NEPYIFKVF	9	Unmodified	_NEPYIFKVF_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7877807617188	2	578.8055	1155.59645	0.093681	5.4223E-05	-0.82914	-0.00047991	-0.73545	-0.00042569	578.8050410240991	73.099	0.45945	73.099	72.94	73.399	0					26	15	2	0	0	0	0.18151	1	17337	17337		29.841	12.728	1	237480			13974	3592	9174	9284	19080	19080					0.02487200137147738
NEPYIFKVF	9	Unmodified	_NEPYIFKVF_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8052978515625	2	578.8055	1155.59645	0.25908	0.00014995	-0.48076	-0.00027827	-0.22169	-0.00012832	578.805063560733	73.053	0.36887	73.105	72.897	73.266	0.052574					22	12	3	0	0	0	0.064247	1	17199	17199		40.239	20.877	1	167320			13975	3592	9174	9284	19081	19081					0.02487200137147738
NERPLEDQL	9	Unmodified	_NERPLEDQL_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2685546875	2	557.280377	1112.5462	0.85624	0.00047716	2.6549	0.0014795	3.5111	0.0019567	557.2819560655086	80.807	0.5179	80.831	80.592	81.11	0.023605					27	17	2	0	0	0	0.27929	1	19616	19616		9.3831	2.66	1	124720			13976	2025	9175	9285	19082	19082					-0.005569542586727039
NESFTVQPR	9	Unmodified	_NESFTVQPR_					0	0	0			REV__ENSG00000169896|ENST00000544665|ITGAM	REV__ENSG00000169896|ENST00000544665|ITGAM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2822265625	2	539.269813	1076.52507	0.302	0.00016286	0.0068962	3.7189E-06	0.30889	0.00016658	539.2697625296319	35.367	0.6181	35.446	35.226	35.844	0.078831					41	23	3	0	0	0	0.29576	1	5847	5847		7.2892	0.56607	1	137620	+		13977	10190	9176	9286	19083	19083					-0.010129195675290248
NETEFWKF	8	Unmodified	_NETEFWKF_					0	0	0			REV__tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	REV__tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7435302734375	2	550.756007	1099.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.32	1	49.32	48.82	49.82	0								0	0	0	0.38822	1	10106	10106		10.824	2.2306	1		+		13978	13222	9177	9287	19084	19084					-0.04830822827761949
NETGCVCTM	9	Unmodified	_NETGCVCTM_					0	0	0			REV__ENST00000513417.5_1_5:76749677-76749713:-|nuORF	REV__ENST00000513417.5_1_5:76749677-76749713:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2776184082031	2	479.177363	956.340173	0.088268	4.2296E-05	1.18	0.00056541	1.2682	0.00060771	479.1777343071107	76.314	0.43362	76.353	76.205	76.639	0.03923					16	15	2	0	0	0	0.25746	1	18210	18210		3.2813	0.97858	1	185770	+		13979	12265	9178	9288	19085	19085					-0.13974310025457726
NETPLPPVL	9	Unmodified	_NETPLPPVL_					0	0	0			REV__METTL1|p.V244Efs*100|1|0.25|ENSG00000037897|chr12:57769077-57769096|CTTCCCTCCATTACGTAGAA/-|frameshift_variant	REV__METTL1|p.V244Efs*100|1|0.25|ENSG00000037897|chr12:57769077-57769096|CTTCCCTCCATTACGTAGAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2770690917969	2	490.276575	978.538597	0.66877	0.00032788	-0.52495	-0.00025737	0.14383	7.0514E-05	490.2761931198271	66.803	0.51523	66.803	66.579	67.095	0					32	19	2	0	0	0	0.17247	1	15448	15448		21.747	1.293	1	143070	+		13980	12732	9179	9289	19086	19086					0.04846938211710494
NETPLPPVL	9	Unmodified	_NETPLPPVL_					0	0	0			REV__METTL1|p.V244Efs*100|1|0.25|ENSG00000037897|chr12:57769077-57769096|CTTCCCTCCATTACGTAGAA/-|frameshift_variant	REV__METTL1|p.V244Efs*100|1|0.25|ENSG00000037897|chr12:57769077-57769096|CTTCCCTCCATTACGTAGAA/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	490.276575	978.538597	0.66877	0.00032788	-0.52495	-0.00025737	0.14383	7.0514E-05	490.2761931198271	66.803	0.51523	66.803	66.579	67.095	0	0.034715	4.8311E-05	NaN	21.747	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143070	+		13981	12732	9179	9289							0.04846938211710494
NETSFCTYT	9	Unmodified	_NETSFCTYT_					0	0	0			REV__ENST00000474873.5_1_10:100195027-100205113:-|nuORF	REV__ENST00000474873.5_1_10:100195027-100205113:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7905883789062	2	533.213314	1064.41208	0.23276	0.00012411	-1.5628	-0.00083328	-1.33	-0.00070917	533.2124358053045	49.267	0.79119	49.267	48.83	49.621	0					40	27	2	0	0	0	0.23598	1	10091	10091		15.847	15.847	1	58463	+		13982	8595	9180	9290	19087	19087					-0.11755356075741474
NEWKQLLIEL	10	Unmodified	_NEWKQLLIEL_					0	0	0			REV__CON__P02754	REV__CON__P02754	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.36083984375	2	643.36117	1284.70779	0.18193	0.00011704	0.71502	0.00046001	0.89694	0.00057706	643.3612819060489	108.11	0.26803	108.14	108.07	108.34	0.022232					58	38	2	0	0	0	0.45627	1	27680	27680		3.5965	0.60125	1	6839800	+	+	13983	7836	9181	9291	19088	19088					0.07682214774445129
NEYFGKLPW	9	Unmodified	_NEYFGKLPW_					0	0	0		ENST00000587410.1_1_18:77132833-77134205:+|nuORF	ENST00000587410.1_1_18:77132833-77134205:+|nuORF	ENST00000587410.1_1_18:77132833-77134205:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.8072509765625	2	577.287474	1152.5604	0.19909	0.00011493	-2.8903	-0.0016685	-2.6912	-0.0015536	577.285931712868	51.876	0.62151	51.876	51.652	52.274	0					48	21	3	0	0	0	0.24635	1	10946	10946		10.824	1.4408	1	222690			13984	7244	9182	9292	19089	19089					-0.00978257039696473
NEYKHAFEI	9	Unmodified	_NEYKHAFEI_					0	0	0		ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7927856445312	2	575.780013	1149.54547	0.21083	0.00012139	-1.7545	-0.0010102	-1.5437	-0.00088882	575.7790149099868	73.625	2.0703	73.625	73.541	75.611	0					129	76	2	0	0	0	0.19398	1	18032	18032		19.257	1.1106	1	1497800			13985	1928	9183	9293	19090	19090					-0.023317489077271603
NEYLKKLS	8	Unmodified	_NEYLKKLS_					0	0	0		ENST00000584977.5_1_18:46917135-46956764:-|nuORF;ENST00000581409.5_1_18:46918007-46956764:-|nuORF;ENST00000577481.5_1_18:46917759-46956764:-|nuORF;nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;DNAH8|p.L1333Ffs*8|1|0.23|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	ENST00000584977.5_1_18:46917135-46956764:-|nuORF	ENST00000584977.5_1_18:46917135-46956764:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7814025878906	2	497.782025	993.549496	-0.16019	-7.9742E-05	0.015287	7.6094E-06	-0.14491	-7.2132E-05	497.782061518548	23.28	0.19508	23.28	23.15	23.345	0					25	18	2	0	0	0	0.54081	1	2374	2374		0.79363	0	1	8930			13986	286	9184	9294	19091	19091					0.052463405860066814
NFDGFWFVE	9	Unmodified	_NFDGFWFVE_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7562255859375	2	580.756007	1159.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.837	1	41.837	41.337	42.337	0								0	0	0	0.28527	1	7847	7847		2.0598	0	1		+		13987	9590	9185	9295	19092	19092					-0.07590822827773991
NFDITYVRGL	10	Unmodified	_NFDITYVRGL_					0	0	0			REV__nc|ENSG00000153827|Q14669-4|TRIP12	REV__nc|ENSG00000153827|Q14669-4|TRIP12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3011474609375	2	599.316763	1196.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.618	1	93.618	93.118	94.118	0								0	0	0	0.29565	1	23605	23605		18.146	3.3081	1		+		13988	9699	9186	9296	19093	19093					0.028527995347531032
NFDLLSLRCE	10	Unmodified	_NFDLLSLRCE_					0	0	0		sp|Q8AZJ3|BNL2B_EBVB9UncharacterizedproteinBNLF2bOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNLF2bPE=3SV=2	sp|Q8AZJ3|BNL2B_EBVB9UncharacterizedproteinBNLF2bOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNLF2bPE=3SV=2	sp|Q8AZJ3|BNL2B_EBVB9UncharacterizedproteinBNLF2bOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNLF2bPE=3SV=2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7684326171875	2	605.300255	1208.58596	0.77907	0.00047157	-0.69455	-0.00042041	0.084526	5.1164E-05	605.2992390890105	64.053	0.26778	64.053	63.87	64.137	0					12	9	2	0	0	0	0.31667	1	14561	14561		8.7454	1.4562	1	59557			13989	13395	9187	9297	19094	19094					-0.009991505795824196
NFDLSEMVQ	9	Unmodified	_NFDLSEMVQ_					0	0	0		sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7323608398438	2	541.744782	1081.47501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.155	1	26.155	25.655	26.655	0								0	0	0	0.27782	1	3182	3182		3.5965	0	1				13990	13391	9188	9298	19095	19095					-0.06246790287696058
NFDNILNSF	9	Unmodified	_NFDNILNSF_					0	0	0		ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.259033203125	2	542.258914	1082.50327	0.581	0.00031505	0.36947	0.00020035	0.95047	0.0005154	542.2587805705392	85.374	0.67331	85.374	85.132	85.806	0					64	28	4	0	0	0	0.00021732	2	21103	21103;21145		136.39	57.664	1	787390			13991	5093	9189	9299	19096;19097	19096					-0.03467724316078602
NFDNILNSF	9	Unmodified	_NFDNILNSF_					0	0	0		ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.25927734375	2	542.258914	1082.50327	0.75122	0.00040736	0.12473	6.7634E-05	0.87595	0.00047499	542.2587779255093	85.334	0.55803	85.358	85.135	85.693	0.023132					56	22	3	0	0	0	7.2615E-09	2	20951	20907;20951		163.69	71.033	1	758090			13992	5093	9189	9299	19098;19099	19099					-0.03467724316078602
NFDTMIYVT	9	Unmodified	_NFDTMIYVT_					0	0	0		RARS2|p.D347E|1|0.36|ENSG00000146282|chr6:87520251-87520251|A/T|missense_variant;ENSG00000146282|ENST00000369536|RARS2	RARS2|p.D347E|1|0.36|ENSG00000146282|chr6:87520251-87520251|A/T|missense_variant	RARS2|p.D347E|1|0.36|ENSG00000146282|chr6:87520251-87520251|A/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7713012695312	2	552.257525	1102.5005	0.44508	0.0002458	0.11688	6.455E-05	0.56197	0.00031035	552.7601729614006	37.115	0.49712	37.199	37.073	37.57	0.084476					21	17	2	0	0	0	0.25051	1	6403	6403		7.9102	0	1	32398			13993	3285	9190	9300	19100	19100					-0.04665315765282685
NFDTNNINKF	10	Unmodified	_NFDTNNINKF_					0	0	0			REV__tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1	REV__tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.79638671875	2	613.793652	1225.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.474	1	57.474	56.974	57.974	0								0	0	0	0.33586	1	12592	12592		2.7352	0	1		+		13994	13051	9191	9301	19101	19101					-0.03101265367331507
NFDVTYNWI	9	Unmodified	_NFDVTYNWI_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7090454101562	2	586.274564	1170.53457	0.85689	0.00050237	-0.38389	-0.00022506	0.473	0.00027731	586.2744711684735	85.14	0.35395	85.14	84.957	85.311	0					18	11	2	0	0	0	0.15281	1	21032	21032		37.075	24.543	1	125920			13995	482	9192	9302	19102	19102					-0.043871512820032876
NFEELNFFF	9	Unmodified	_NFEELNFFF_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.7769165039062	2	603.776939	1205.53933	0.61012	0.00036838	0.11214	6.7707E-05	0.72226	0.00043608	603.7768765747552	100.51	0.38692	100.51	100.34	100.73	0					47	22	3	0	0	0	0.14444	2	25689	25689;25733		24.991	12.75	1	132040			13996	1990	9193	9303	19103;19104	19103					-0.05522267139258474
NFEELNFFF	9	Unmodified	_NFEELNFFF_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.7774047851562	2	603.776939	1205.53933	0.72971	0.00044058	-0.0043342	-2.6169E-06	0.72538	0.00043797	603.7768115222433	100.45	0.42384	100.49	100.34	100.76	0.042839					43	24	2	0	0	0	0.14444	2	25554	25554;25592		24.991	12.75	1	106870			13997	1990	9193	9303	19105;19106	19105					-0.05522267139258474
NFEIEGPFF	9	Unmodified	_NFEIEGPFF_					0	0	0			REV__ENST00000538915.2_1_17:12853006-12862275:+|nuORF	REV__ENST00000538915.2_1_17:12853006-12862275:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.218994140625	2	550.258382	1098.50221	0.31356	0.00017254	2.6086	0.0014354	2.9222	0.001608	550.2602512393895	95.332	0.099838	95.371	95.287	95.386	0.038864					5	3	2	0	0	0	0.25051	1	23956	23956		7.9102	0.62092	1	35919	+		13998	7946	9194	9304	19107	19107					-0.04309938684991721
NFFDVIKQLF	10	Unmodified	_NFFDVIKQLF_					0	0	0		ENSG00000174672|ENST00000528841|BRSK2	ENSG00000174672|ENST00000528841|BRSK2	ENSG00000174672|ENST00000528841|BRSK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.845703125	2	635.845156	1269.67576	0.2951	0.00018764	-0.16383	-0.00010417	0.13127	8.3468E-05	636.3466494636198	82.068	0.59933	82.09	81.905	82.504	0.021866					40	21	3	0	0	0	0.30966	1	19946	19946		21.537	3.3906	1	122550			13999	4595	9195	9305	19108	19108					0.051708470912672055
NFFFYKDT	8	Unmodified	_NFFFYKDT_					0	0	0		MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|23|1|anti-sense	MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|23|1|anti-sense	MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|23|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.26904296875	2	541.2531	1080.49165	-0.0018442	-9.9816E-07	-0.89401	-0.00048389	-0.89586	-0.00048488	541.252679186437	33.565	1.1501	33.565	33.328	34.478	0					94	43	4	0	0	0	0.54097	1	5557	5557		0.69038	0	1	379800			14000	7431	9196	9306	19109	19109					-0.045379213394198814
NFFHCERKP	9	Unmodified	_NFFHCERKP_					0	0	0			REV__HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant	REV__HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7570190429688	2	589.2822	1176.54985	0.67115	0.0003955	0.2098	0.00012363	0.88095	0.00051913	589.2822637718119	92.226	1.2576	92.262	91.859	93.117	0.036522					97	45	3	0	0	0	0.25174	1	23244	23244		7.2892	0.56607	1	322540	+		14001	10800	9197	9307	19110	19110					-0.03136562965801204
NFFPIAGLEF	10	Unmodified	_NFFPIAGLEF_					0	0	0		ENST00000561079.1_1_15:51755569-51758496:-|nuORF;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	ENST00000561079.1_1_15:51755569-51758496:-|nuORF	ENST00000561079.1_1_15:51755569-51758496:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7986450195312	2	577.797675	1153.5808	0.42912	0.00024795	1.1852	0.00068483	1.6144	0.00093278	577.7988957769217	100.72	0.74963	100.72	100.48	101.23	0					77	43	3	0	0	0	0.07941	1	25757	25757		49.554	35.648	1	196020			14002	1397	9198	9308	19111	19111					0.010149136201107467
NFFPIAGLEF	10	Unmodified	_NFFPIAGLEF_					0	0	0		ENST00000561079.1_1_15:51755569-51758496:-|nuORF;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	ENST00000561079.1_1_15:51755569-51758496:-|nuORF	ENST00000561079.1_1_15:51755569-51758496:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7977905273438	2	577.797675	1153.5808	0.54272	0.00031358	-0.040039	-2.3134E-05	0.50268	0.00029045	577.7974401689032	100.63	0.54973	100.67	100.49	101.04	0.042839					47	34	2	0	0	0	0.049706	2	25585	25585;25638		57.722	43.816	1	144090			14003	1397	9198	9308	19112;19113	19112					0.010149136201107467
NFFTWALKI	9	Unmodified	_NFFTWALKI_					0	0	0		nc|ENSG00000139865|Q86TZ1-2|TTC6;nc|ENSG00000139865|Q86TZ1|TTC6;ENSG00000139865|ENST00000553443|TTC6	nc|ENSG00000139865|Q86TZ1-2|TTC6;nc|ENSG00000139865|Q86TZ1|TTC6	nc|ENSG00000139865|Q86TZ1|TTC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.8289794921875	2	570.316035	1138.61752	0.35918	0.00020485	0.23058	0.0001315	0.58976	0.00033635	570.315847085658	74.536	0.61798	74.536	74.37	74.988	0					54	22	3	0	0	0	0.22912	1	17795	17795		13.042	13.042	1	481060			14004	7511;2990	9199	9309	19114	19114					0.0537521023663885
NFFTWALKI	9	Unmodified	_NFFTWALKI_					0	0	0		nc|ENSG00000139865|Q86TZ1-2|TTC6;nc|ENSG00000139865|Q86TZ1|TTC6;ENSG00000139865|ENST00000553443|TTC6	nc|ENSG00000139865|Q86TZ1-2|TTC6;nc|ENSG00000139865|Q86TZ1|TTC6	nc|ENSG00000139865|Q86TZ1|TTC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8289184570312	2	570.316035	1138.61752	0.38349	0.00021871	0.027829	1.5871E-05	0.41132	0.00023458	570.3158296238621	74.527	0.57846	74.576	74.369	74.947	0.048546					46	20	3	0	0	0	0.20294	1	17620	17620		19.362	19.362	1	338430			14005	7511;2990	9199	9309	19115	19115					0.0537521023663885
NFGKTVLV	8	Unmodified	_NFGKTVLV_					0	0	0			REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2405090332031	2	439.260728	876.506903	0.45351	0.00019921	-2.3454	-0.0010303	-1.8919	-0.00083104	439.25948559108866	54.449	0.35831	54.514	54.399	54.758	0.065128					25	20	2	0	0	0	0.3576	1	11529	11529		7.2892	0	1	145480	+		14006	9315	9200	9310	19116	19116					0.06370990248410635
NFGKTVLV	8	Unmodified	_NFGKTVLV_					0	0	0			REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	439.260728	876.506903	0.75801	0.00033296	-2.3364	-0.0010263	-1.5784	-0.00069332	439.2594253131097	54.523	0.4556	54.523	54.371	54.827	0	0.0042918	4.448E-06	NaN	7.2892	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216140	+		14007	9315	9200	9310							0.06370990248410635
NFIKQYWQF	9	Unmodified	_NFIKQYWQF_					0	0	0		ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3	ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.8239135742188	2	637.321848	1272.62914	0.26034	0.00016592	0.00696	4.4358E-06	0.2673	0.00017036	637.3219138323	76.2	0.72595	76.2	75.977	76.702	0					58	35	2	0	0	0	0.3182	1	18258	18258		4.3292	0.73274	1	1089000			14008	2663	9201	9311	19117	19117					0.003734072599627325
NFIKQYWQF	9	Unmodified	_NFIKQYWQF_					0	0	0		ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3	ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3208618164062	2	637.321848	1272.62914	0.31247	0.00019914	0.19427	0.00012381	0.50674	0.00032295	637.3219303660812	76.078	0.5371	76.118	75.989	76.526	0.03923					53	27	4	0	0	0	0.33704	1	18098	18098		1.8442	0	1	1207300			14009	2663	9201	9311	19118	19118					0.003734072599627325
NFKNQWRF	8	Unmodified	_NFKNQWRF_					0	0	0			REV__chr11:59108712-59109540|507|17.02|0.93|4.2|+|1|FAM111B,FAM111B|1	REV__chr11:59108712-59109540|507|17.02|0.93|4.2|+|1|FAM111B,FAM111B|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.294189453125	2	570.290882	1138.56721	0.19202	0.00010951	4.0649	0.0023182	4.257	0.0024277	570.7943465018357	36.918	0.18591	36.918	36.776	36.962	0					9	6	2	0	0	0	0.3576	1	6333	6333		0.69038	0.088878	1	14512	+		14010	7776	9202	9312	19119	19119					0.0034710063150669157
NFKNQWRF	8	Unmodified	_NFKNQWRF_					0	0	0			REV__chr11:59108712-59109540|507|17.02|0.93|4.2|+|1|FAM111B,FAM111B|1	REV__chr11:59108712-59109540|507|17.02|0.93|4.2|+|1|FAM111B,FAM111B|1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	570.290882	1138.56721	0.21793	0.00012428	4.4748	0.0025519	4.6927	0.0026762	570.7938965344863	36.801	0.10648	36.883	36.79	36.896	0.081715	-0.017395	0.00038881	NaN	0.69038	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8359.2	+		14011	7776	9202	9312							0.0034710063150669157
NFLDFAYHF	9	Unmodified	_NFLDFAYHF_					0	0	0		ENSG00000147676|ENST00000614891|MAL2	ENSG00000147676|ENST00000614891|MAL2	ENSG00000147676|ENST00000614891|MAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.27294921875	2	587.271824	1172.5291	0.61788	0.00036286	-0.51539	-0.00030267	0.10249	6.0187E-05	587.2711914993721	83.11	0.41365	83.11	82.957	83.371	0					28	13	3	0	0	0	0.02293	2	20412	20412;20423		56.177	43.936	1	177220			14012	3337	9203	9313	19120;19121	19120					-0.05026830073825295
NFLDFAYHF	9	Unmodified	_NFLDFAYHF_					0	0	0		ENSG00000147676|ENST00000614891|MAL2	ENSG00000147676|ENST00000614891|MAL2	ENSG00000147676|ENST00000614891|MAL2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	587.271824	1172.5291	0.59947	0.00035205	-0.4625	-0.00027161	0.13697	8.0441E-05	587.77305347679	83.059	0.34605	83.081	82.987	83.333	0.021744	-0.014491	3.0365E-05	NaN	56.177	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132350			14013	3337	9203	9313							-0.05026830073825295
NFLPPRPDFV	10	Unmodified	_NFLPPRPDFV_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7903442382812	2	601.321848	1200.62914	0.44957	0.00027033	0.58727	0.00035314	1.0368	0.00062347	601.3223916477125	88.739	0.52406	88.739	88.432	88.956	0					26	21	2	0	0	0	0.31731	1	22087	22087		6.2058	1.4498	1	83881			14014	1796	9204	9314	19122	19122					0.036854072599680876
NFLRDMCKKY	10	Unmodified	_NFLRDMCKKY_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.8855895996094	3	439.886259	1316.63695	-0.2457	-0.00010808	-0.031759	-1.397E-05	-0.27746	-0.00012205	439.886232811729	28.26	1.0488	28.342	28.107	29.156	0.082132					191	66	5	0	0	0	0.46608	1	3620	3620		1.7423	1.7423	1	1101800			14015	2982	9205	9315	19123	19123					-0.008705248063961335
NFLSRSFYW	9	Unmodified	_NFLSRSFYW_					0	0	0		nc|ENSG00000104442|Q9NVT9-2|ARMC1;ENSG00000104442|ENST00000276569|ARMC1	nc|ENSG00000104442|Q9NVT9-2|ARMC1	nc|ENSG00000104442|Q9NVT9-2|ARMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.2986450195312	2	610.298373	1218.58219	0.14306	8.7311E-05	-0.49411	-0.00030155	-0.35105	-0.00021424	610.2984109423693	71.807	1.1061	71.807	71.556	72.662	0					80	38	3	0	0	0	0.0039507	2	16957	16957;17007		103.82	68.891	1	1119500			14016	1415	9206	9316	19124;19125	19124					-0.01835452291152251
NFLSRSFYW	9	Unmodified	_NFLSRSFYW_					0	0	0		nc|ENSG00000104442|Q9NVT9-2|ARMC1;ENSG00000104442|ENST00000276569|ARMC1	nc|ENSG00000104442|Q9NVT9-2|ARMC1	nc|ENSG00000104442|Q9NVT9-2|ARMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.2986450195312	2	610.298373	1218.58219	0.24579	0.00015	-0.52334	-0.0003194	-0.27756	-0.00016939	610.2984333499293	71.768	0.94118	71.824	71.597	72.538	0.055931					70	33	4	0	0	0	0.0046695	2	16818	16770;16818		84.522	49.59	1	1507800			14017	1415	9206	9316	19126;19127	19127					-0.01835452291152251
NFPVLTLYLL	10	Unmodified	_NFPVLTLYLL_					0	0	0		ENST00000591629.1_1_18:36788677-37115429:-|nuORF	ENST00000591629.1_1_18:36788677-37115429:-|nuORF	ENST00000591629.1_1_18:36788677-37115429:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2606201171875	2	596.85245	1191.69035	0.2398	0.00014312	-0.22136	-0.00013212	0.018442	1.1007E-05	596.8520765835557	76.59	0.54034	76.59	76.467	77.008	0					21	18	2	0	0	0	0.31616	1	18452	18452		6.2058	0	1	136340			14018	7265	9207	9317	19128	19128					0.10216919239428535
NFQLCRMI	8	Unmodified	_NFQLCRMI_					0	0	0			REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3	REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7568969726562	2	512.756972	1023.49939	0.14422	7.3948E-05	-1.0945	-0.00056119	-0.95024	-0.00048724	512.7564163822067	35.207	0.63603	35.285	34.933	35.569	0.078827					31	24	2	0	0	0	0.53423	1	5725	5725		5.2307	0	1	35915	+		14019	9937	9208	9318	19129	19129					-0.01141808615170703
NFQLCRMI	8	Unmodified	_NFQLCRMI_					0	0	0			REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3	REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.756972	1023.49939	0.11676	5.9869E-05	-0.9726	-0.0004987	-0.85584	-0.00043884	512.7565387484996	35.229	0.70533	35.229	34.912	35.617	0	-0.028045	6.1273E-05	NaN	5.2307	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44520	+		14020	9937	9208	9318							-0.01141808615170703
NFQLCRMI	8	Unmodified	_NFQLCRMI_					0	0	0			REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3	REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.756972	1023.49939	0.14422	7.3948E-05	-1.0945	-0.00056119	-0.95024	-0.00048724	512.7564163822067	35.207	0.63603	35.285	34.933	35.569	0.078827	0.028045	-6.3697E-05	NaN	5.2307	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35915	+		14021	9937	9208	9318							-0.01141808615170703
NFQQEDEGF	9	Unmodified	_NFQQEDEGF_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7781372070312	2	557.22781	1112.44107	0.68297	0.00038057	-0.81805	-0.00045584	-0.13508	-7.5273E-05	557.2271898186448	85.393	0.22841	85.393	85.254	85.482	0					13	8	2	0	0	0	0.25174	1	21076	21076		7.2892	3.3448	1	143080			14022	2647	9209	9319	19130	19130					-0.11065495455090968
NFQQEDEGF	9	Unmodified	_NFQQEDEGF_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	557.22781	1112.44107	0.88036	0.00049056	-1.9136	-0.0010663	-1.0332	-0.00057574	557.2268940334967	85.345	0.38943	85.368	85.239	85.628	0.023125	-0.012439	-0.00041216	NaN	7.2892	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165020			14023	2647	9209	9319							-0.11065495455090968
NFSASRMLKSI	11	Unmodified	_NFSASRMLKSI_					0	0	0			REV__nc|ENSG00000123908|Q9UKV8-2|AGO2	REV__nc|ENSG00000123908|Q9UKV8-2|AGO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.3380126953125	2	627.337172	1252.65979	0.16171	0.00010145	0.89465	0.00056125	1.0564	0.0006627	627.3374448286522	76.734	0.42513	76.734	76.55	76.975	0					30	14	3	0	0	0	0.39744	1	18466	18466		4.897	1.3005	1	204470	+		14024	8939	9210	9320	19131	19131					0.04356817582743133
NFSSSNFAKQM	11	Unmodified	_NFSSSNFAKQM_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.7881469726562	2	630.787512	1259.56047	0.36238	0.00022858	0.40155	0.0002533	0.76393	0.00048188	630.787622222436	69.195	2.4979	69.195	68.888	71.386	0					276	89	4	0	0	0	0.099983	1	16251	16251		45.74	12.954	1	6687400	+		14025	8394	9211	9321	19132	19132					-0.058926251020466225
NFSSSNFAKQM	11	Unmodified	_NFSSSNFAKQM_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.787841796875	2	630.787512	1259.56047	0.23757	0.00014985	0.49441	0.00031187	0.73198	0.00046172	630.7876809206616	69.143	2.966	69.205	68.718	71.684	0.062126					255	114	4	0	0	0	0.14587	1	16065	16065		38.615	2.1085	1	7875700	+		14026	8394	9211	9321	19133	19133					-0.058926251020466225
NFTLPDSF	8	Unmodified	_NFTLPDSF_					0	0	0			REV__nc|ENSG00000117461|Q92569-3|PIK3R3	REV__nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7245178222656	2	470.724175	939.433798	0.23231	0.00010935	0.016195	7.6232E-06	0.24851	0.00011698	470.72420178894026	62.534	0.59797	62.534	62.314	62.912	0					33	21	2	0	0	0	0.43379	1	14130	14130		21.747	0.87544	1	145710	+		14027	8828	9212	9322	19134	19134					-0.03834183264859803
NFTTEHIGR	9	Unmodified	_NFTTEHIGR_					0	0	0			REV__ENST00000418351.1_1_15:44281261-44281585:-|nuORF	REV__ENST00000418351.1_1_15:44281261-44281585:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2517700195312	2	537.76998	1073.52541	0.24533	0.00013193	-2.5297	-0.0013604	-2.2844	-0.0012285	537.7686498594719	49.228	0.5577	49.228	49.004	49.562	0					24	19	2	0	0	0	0.24635	1	10160	10160		10.824	1.4765	1	52422	+		14028	11807	9213	9323	19135	19135					-0.00841499847660998
NFYPILTF	8	Unmodified	_NFYPILTF_					0	0	0			REV__ENST00000432627.5_1_7:48018406-48019095:-|nuORF	REV__ENST00000432627.5_1_7:48018406-48019095:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2459716796875	2	507.768386	1013.52222	0.20083	0.00010197	-1.363	-0.0006921	-1.1622	-0.00059013	507.76776096414386	37.28	0.28669	37.28	37.106	37.393	0					17	10	2	0	0	0	0.35759	1	6452	6452		9.3474	3.587	1	32025	+		14029	11853	9214	9324	19136	19136					0.015998570456190464
NFYPILTF	8	Unmodified	_NFYPILTF_					0	0	0			REV__ENST00000432627.5_1_7:48018406-48019095:-|nuORF	REV__ENST00000432627.5_1_7:48018406-48019095:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	507.768386	1013.52222	0.23259	0.0001181	-1.5866	-0.0008056	-1.354	-0.0006875	507.7676764787143	37.16	0.27167	37.245	37.102	37.374	0.084476	-0.017628	-0.00018017	NaN	9.3474	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29871	+		14030	11853	9214	9324							0.015998570456190464
NFYPQPLFN	9	Unmodified	_NFYPQPLFN_					0	0	0		ATRN|p.L1042F|1|0.38|ENSG00000088812|chr20:3584820-3584820|C/T|missense_variant	ATRN|p.L1042F|1|0.38|ENSG00000088812|chr20:3584820-3584820|C/T|missense_variant	ATRN|p.L1042F|1|0.38|ENSG00000088812|chr20:3584820-3584820|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.8038330078125	2	570.279649	1138.54475	-0.052409	-2.9888E-05	-1.1442	-0.00065249	-1.1966	-0.00068238	570.2790132247445	39.673	0.35427	39.673	39.482	39.836	0					23	12	3	0	0	0	0.23598	1	7197	7197		15.847	4.2069	1	48717			14031	75	9215	9325	19137	19137					-0.018985435567628883
NFYVKHCTY	9	Unmodified	_NFYVKHCTY_					0	0	0		ENST00000517845.5_2_8:126091002-126094647:-|nuORF	ENST00000517845.5_2_8:126091002-126094647:-|nuORF	ENST00000517845.5_2_8:126091002-126094647:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.771728515625	2	587.771134	1173.52771	0.75756	0.00044527	0.37932	0.00022296	1.1369	0.00066823	587.7714287388598	96.923	0.8698	96.962	96.632	97.502	0.039772					136	42	6	0	0	0	0.24635	1	24455	24455		10.824	1.4765	1	1214400			14032	6939	9216	9326	19138	19138					-0.05210787434202757
NGDGPSPLTSW	11	Unmodified	_NGDGPSPLTSW_					0	0	0			REV__ENST00000513117.1_1_5:6633544-6656205:+|nuORF	REV__ENST00000513117.1_1_5:6633544-6656205:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2986450195312	2	565.759278	1129.504	0.47572	0.00026914	-2.2915	-0.0012965	-1.8158	-0.0010273	566.2592319062209	92.289	0.46485	92.289	92.088	92.552	0					54	17	5	0	0	0	0.30908	1	23142	23142		16.149	2.6412	1	217010	+		14033	11280	9217	9327	19139	19139					-0.05556929667068289
NGDGPSPLTSW	11	Unmodified	_NGDGPSPLTSW_					0	0	0			REV__ENST00000513117.1_1_5:6633544-6656205:+|nuORF	REV__ENST00000513117.1_1_5:6633544-6656205:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2981567382812	2	565.759278	1129.504	0.42748	0.00024185	-2.4523	-0.0013874	-2.0248	-0.0011456	565.7573232380028	92.269	0.53749	92.305	92.048	92.585	0.03653					42	18	4	0	0	0	0.30965	1	23109	23109		12.241	3.6474	1	178700	+		14034	11280	9217	9327	19140	19140					-0.05556929667068289
NGDKIDVEKL	10	Unmodified	_NGDKIDVEKL_					0	0	0		tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8071899414062	2	565.806228	1129.5979	0.29391	0.0001663	1.5132	0.0008562	1.8072	0.0010225	565.8070736703565	73.686	0.36658	73.738	73.57	73.937	0.052574					33	13	3	0	0	0	0.34796	1	17359	17359		17.443	0	1	179160			14035	13484	9218	9328	19141	19141					0.038287894352379226
NGEDVEEVVT	10	Unmodified	_NGEDVEEVVT_					0	0	0		tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1	tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1	tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.76318359375	2	545.748576	1089.4826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.893	1	23.893	23.393	24.393	0								0	0	0	0.33905	1	2534	2534		1.3295	0	1				14036	13541	9219	9329	19142	19142					-0.058563594864153856
NGKITAYIL	9	Unmodified	_NGKITAYIL_					0	0	0		ROCK1-DCC|1|fusion;ENSG00000187323|ENST00000442544|DCC	ROCK1-DCC|1|fusion	ROCK1-DCC|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7947998046875	2	496.792392	991.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.53	1	101.53	101.03	102.03	0								0	0	0	0.27613	1	26012	26012		3.9444	0.3479	1				14037	13351	9220	9330	19143	19143					0.07410930965670559
NGKQLVLVF	9	Unmodified	_NGKQLVLVF_					0	0	0			REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF	REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.308349609375	2	509.30821	1016.60187	0.21131	0.00010762	0.18757	9.5532E-05	0.39888	0.00020315	509.30819404821887	58.098	0.30986	58.098	57.907	58.217	0					17	10	2	0	0	0	0.16036	1	12789	12789		23.148	0	1	150110	+		14038	11430	9221	9331	19144	19144					0.09422923719614573
NGKQLVLVF	9	Unmodified	_NGKQLVLVF_					0	0	0			REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF	REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.3082275390625	2	509.30821	1016.60187	0.23588	0.00012014	-0.24715	-0.00012588	-0.011271	-5.7403E-06	509.30807701542807	57.96	0.49176	58.028	57.893	58.385	0.068371					29	18	2	0	0	0	0.22344	2	12611	12611;12657		15.847	0	1	107130	+		14039	11430	9221	9331	19145;19146	19145					0.09422923719614573
NGKQLVLVF	9	Unmodified	_NGKQLVLVF_					0	0	0			REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF	REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	509.30821	1016.60187	0.21131	0.00010762	0.18757	9.5532E-05	0.39888	0.00020315	509.30819404821887	58.098	0.30986	58.098	57.907	58.217	0	0.034635	0.00016881	NaN	23.148	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150110	+		14040	11430	9221	9331							0.09422923719614573
NGKQLVLVF	9	Unmodified	_NGKQLVLVF_					0	0	0			REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF	REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.30821	1016.60187	0.23588	0.00012014	-0.24715	-0.00012588	-0.011271	-5.7403E-06	509.30807701542807	57.96	0.49176	58.028	57.893	58.385	0.068371	-0.034635	-0.000274	NaN	23.148	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107130	+		14041	11430	9221	9331							0.09422923719614573
NGKYTITSL	9	Unmodified	_NGKYTITSL_					0	0	0		TTN|p.R2317L|1|0.3|ENSG00000155657|chr2:178774314-178774314|C/A|missense_variant	TTN|p.R2317L|1|0.3|ENSG00000155657|chr2:178774314-178774314|C/A|missense_variant	TTN|p.R2317L|1|0.3|ENSG00000155657|chr2:178774314-178774314|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7718200683594	2	498.771657	995.528761	0.58306	0.00029081	0.30946	0.00015435	0.89252	0.00044516	498.7717325093774	67.377	1.0021	67.377	67.068	68.07	0					78	38	3	0	0	0	0.03472	1	15634	15634		47.749	1.7277	1	1024400			14042	13758	9222	9332	19147	19147					0.030817502063428037
NGLALHLMA	9	Unmodified	_NGLALHLMA_					0	0	0		ENSG00000163064|ENST00000295206|EN1	ENSG00000163064|ENST00000295206|EN1	ENSG00000163064|ENST00000295206|EN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.27215576171875	2	470.257662	938.500772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.373	1	92.41	91.91	92.91	0.03653								0	0	0	0.28631	1	23065	23065		1.8442	0	1				14043	3875	9223	9333	19148	19148					0.029061487452622714
NGLEQASL	8	Unmodified	_NGLEQASL_					0	0	0			REV__ENSG00000019995|ENST00000359653|ZRANB1	REV__ENSG00000019995|ENST00000359653|ZRANB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2140808105469	2	416.213975	830.413397	-0.32993	-0.00013732	0.73628	0.00030645	0.40635	0.00016913	416.2141786903477	40.551	0.54408	40.641	40.437	40.981	0.089642					47	21	3	0	0	0	0.49148	1	7369	7369		13.906	0.86358	1	118950	+		14044	7996	9224	9334	19149	19149					-0.008593539246589899
NGNDYATLVL	10	Unmodified	_NGNDYATLVL_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3096313476562	2	540.272021	1078.52949	0.56959	0.00030773	-1.0433	-0.00056365	-0.47369	-0.00025592	540.2715623920475	97.314	0.28179	97.314	97.156	97.438	0					17	11	3	0	0	0	0.29402	1	24752	24752		24.991	4.5764	1	46724	+		14045	8746	9225	9335	19150	19150					-0.006634551446268233
NGNKNECIAKI	11	Unmodified	_NGNKNECIAKI_					0	0	0			REV__ENSG00000214274|ENST00000397990|ANG	REV__ENSG00000214274|ENST00000397990|ANG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8781433105469	3	401.876529	1202.60776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.944	1	26.944	26.444	27.444	0								0	0	0	0.33873	1	3405	3405		0.40827	0.17242	1		+		14046	10998	9226	9336	19151	19151					0.014556541689671576
NGQQVCANQYQ	11	Unmodified	_NGQQVCANQYQ_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.1832580566406	3	418.184021	1251.53023	0.018225	7.6212E-06	-1.1719	-0.00049006	-1.1537	-0.00048244	418.18341008526335	69.149	0.44623	69.212	69.028	69.474	0.062126					24	16	2	0	0	0	0.38057	1	15999	15999		4.4062	0	1	552810	+		14047	10520	9227	9337	19152	19152					-0.08546983767223537
NGSLEQTEEPE	11	Unmodified	_NGSLEQTEEPE_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;ENST00000513898.5_1_4:2696860-2717089:+|nuORF;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.768310546875	2	616.767497	1231.52044	-0.46855	-0.00028899	1.5419	0.00095098	1.0733	0.00066199	616.7685039937844	39.505	0.89394	39.505	39.03	39.924	0					46	32	2	0	0	0	0.4147	1	7088	7088		0.96228	0.43751	1	62321			14048	2291	9228	9338	19153	19153					-0.08605893291587563
NGTEIAHIDAG	11	Unmodified	_NGTEIAHIDAG_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2515869140625	2	549.264727	1096.5149	0.029342	1.6116E-05	0.36769	0.00020196	0.39703	0.00021807	549.2649478591168	31.858	0.5461	31.932	31.677	32.223	0.073782					53	24	3	0	0	0	0.41369	1	4800	4800		1.1933	0.50296	1	75768			14049	112	9229	9339	19154	19154					-0.029495272927761107
NGTSSVIVSR	10	Unmodified	_NGTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2774963378906	2	510.277638	1018.54072	-0.15495	-7.9068E-05	-1.3588	-0.00069338	-1.5138	-0.00077245	510.2766532896898	28.988	0.42869	28.988	28.823	29.252	0					52	26	3	0	0	0	0.45313	1	3979	3979		4.1895	2.3453	1	48272			14050	789	9230	9340	19155	19155					0.03219366949531377
NGTSSVIVSR	10	Unmodified	_NGTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2775573730469	2	510.277638	1018.54072	-0.1217	-6.2101E-05	-1.5996	-0.00081627	-1.7213	-0.00087837	510.27657313092334	28.903	0.49999	28.981	28.789	29.289	0.078289					60	35	2	0	0	0	0.44253	1	3817	3817		6.1918	3.6934	1	45680			14051	789	9230	9340	19156	19156					0.03219366949531377
NGTVPVNYI	9	Unmodified	_NGTVPVNYI_					0	0	0			REV__RNF133|p.G134V|1|0.23|ENSG00000188050|chr7:122698518-122698518|C/A|missense_variant	REV__RNF133|p.G134V|1|0.23|ENSG00000188050|chr7:122698518-122698518|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7559509277344	2	488.758549	975.502546	-0.23486	-0.00011479	-3.1815	-0.001555	-3.4164	-0.0016698	488.75697884191044	28.211	0.36757	28.293	28.069	28.436	0.082134					42	22	3	0	0	0	0.30005	1	3621	3621		6.7232	1.9672	1	40892	+		14052	12977	9231	9341	19157	19157					0.013814810348435458
NHARYMDPAG	10	Unmodified	_NHARYMDPAG_					0	0	0		ENST00000545210.5_1_11:61557269-61557995:-|nuORF	ENST00000545210.5_1_11:61557269-61557995:-|nuORF	ENST00000545210.5_1_11:61557269-61557995:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8161010742188	2	566.25364	1130.49273	0.41986	0.00023774	3.7942	0.0021485	4.2141	0.0023863	566.7580137397977	88.286	0.17749	88.286	88.139	88.317	0					9	6	2	0	0	0	0.31565	1	21985	21985		12.241	1.4167	1	112960			14053	7073	9232	9342	19158	19158					-0.0673003024216996
NHFAAGGF	8	Unmodified	_NHFAAGGF_					0	0	0		nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM;MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant	nc|ENSG00000085276|Q03112-8|MECOM	nc|ENSG00000085276|Q03112-8|MECOM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.6909484863281	2	410.69047	819.366387	1.0042	0.00041243	0.49431	0.00020301	1.4986	0.00061544	410.6906698657501	81.307	0.54961	81.307	81.023	81.573	0					31	18	3	0	0	0	0.54081	1	19884	19884		0.79363	0.79363	1	124050			14054	956	9233	9343	19159	19159					-0.05052168685142533
NHFAAGGF	8	Unmodified	_NHFAAGGF_					0	0	0		nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM;MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant	nc|ENSG00000085276|Q03112-8|MECOM	nc|ENSG00000085276|Q03112-8|MECOM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.6909484863281	2	410.69047	819.366387	0.34605	0.00014212	1.1683	0.0004798	1.5143	0.00062192	410.6909664526388	81.213	0.45373	81.235	81.022	81.476	0.022316					31	15	3	0	0	0	0.54081	1	19685	19685		0.79363	0.79363	1	157530			14055	956	9233	9343	19160	19160					-0.05052168685142533
NHFLVMLF	8	Unmodified	_NHFLVMLF_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.77056884765625	2	510.770406	1019.52626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.053	1	17.13	16.63	17.63	0.077806								0	0	0	0.38822	1	776	776		0.79363	0	1		+		14056	10170	9234	9344	19161	19161					0.0172762326768634
NHFPWPLL	8	Unmodified	_NHFPWPLL_					0	0	0		ENST00000485968.5_1_3:120142814-120142904:-|nuORF	ENST00000485968.5_1_3:120142814-120142904:-|nuORF	ENST00000485968.5_1_3:120142814-120142904:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.798095703125	2	512.27417	1022.53379	0.32715	0.00016759	1.4151	0.0007249	1.7422	0.00089249	512.2741390420947	37.79	0.35994	37.874	37.684	38.044	0.084476					18	11	2	0	0	0	0.3576	1	6525	6525		2.5775	0	1	19146			14057	6779	9235	9345	19162	19162					0.023420988596058123
NHGGVTNF	8	Unmodified	_NHGGVTNF_					0	0	0			REV__ENST00000549668.1_1_12:44926343-45059345:-|nuORF	REV__ENST00000549668.1_1_12:44926343-45059345:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	423.21197509765625	2	423.198659	844.382765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.39	1	56.456	55.956	56.956	0.066452								0	0	0	0.38822	1	12124	12124		9.3474	0	1		+		14058	10640	9236	9346	19163	19163					-0.04565087519051758
NHMKHWLI	8	Unmodified	_NHMKHWLI_					0	0	0			REV__ENSG00000143845|ENST00000367202|ETNK2	REV__ENSG00000143845|ENST00000367202|ETNK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.80419921875	2	539.784379	1077.5542	0.15196	8.2023E-05	-0.28971	-0.00015638	-0.13776	-7.436E-05	539.7840423732457	104.79	0.36788	104.79	104.6	104.96	0					66	35	3	0	0	0	0.53858	1	26923	26923		2.3027	0.82083	1	145530	+		14059	9478	9237	9347	19164	19164					0.01852946247777254
NHQIAANAVAN	11	Unmodified	_NHQIAANAVAN_					0	0	0			REV__ENST00000528826.1_1_11:76157982-76169407:+|nuORF	REV__ENST00000528826.1_1_11:76157982-76169407:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2568359375	2	561.786161	1121.55777	0.5212	0.0002928	-3.8349	-0.0021544	-3.3137	-0.0018616	562.28600602079	55.424	0.32752	55.489	55.292	55.62	0.065132					13	12	2	0	0	0	0.3108	1	11789	11789		2.9952	0.93549	1	34741	+		14060	9810	9238	9348	19165	19165					0.0018528755533679941
NHQITVLH	8	Unmodified	_NHQITVLH_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2469177246094	2	481.264333	960.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.15	1	107.15	106.65	107.65	0								0	0	0	0.38822	1	27645	27645		7.9102	0	1				14061	440	9239	9349	19166	19166					0.03227722848839676
NHSCRCFVW	9	Unmodified	_NHSCRCFVW_					0	0	0		ENST00000521972.1_1_8:59496667-59498469:-|nuORF	ENST00000521972.1_1_8:59496667-59498469:-|nuORF	ENST00000521972.1_1_8:59496667-59498469:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.792724609375	2	576.247303	1150.48005	0.80927	0.00046634	-2.8711	-0.0016545	-2.0618	-0.0011881	576.2458361895789	81.22	0.31669	81.22	81.087	81.404	0					16	10	2	0	0	0	0.25809	1	19806	19806		2.3027	0.24298	1	94018			14062	6964	9240	9350	19167	19167					-0.08916764906075514
NHSCRCFVW	9	Unmodified	_NHSCRCFVW_					0	0	0		ENST00000521972.1_1_8:59496667-59498469:-|nuORF	ENST00000521972.1_1_8:59496667-59498469:-|nuORF	ENST00000521972.1_1_8:59496667-59498469:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	576.247303	1150.48005	0.54327	0.00031306	-2.6131	-0.0015058	-2.0698	-0.0011927	576.2460379742898	81.225	0.42245	81.247	80.999	81.421	0.021866	0.013238	0.00013665	NaN	2.3027	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80269			14063	6964	9240	9350							-0.08916764906075514
NHSKVTTL	8	Unmodified	_NHSKVTTL_					0	0	0		nc|ENSG00000010704|Q30201-10|HFE;JARID2-HFE|4|fusion	nc|ENSG00000010704|Q30201-10|HFE	nc|ENSG00000010704|Q30201-10|HFE	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.249267578125	2	450.250892	898.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.015	1	59.015	58.515	59.515	0								0	0	0	0.38822	1	13055	13055		5.2307	0	1				14064	7365	9241	9351	19168	19168					0.03392614237657199
NHYGHVHGCNL	11	Unmodified	_NHYGHVHGCNL_					0	0	0			REV__ENSG00000197329|ENST00000358912|PELI1	REV__ENSG00000197329|ENST00000358912|PELI1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.18328857421875	3	417.520968	1249.54107	0.68896	0.00028765	-0.70256	-0.00029333	-0.013601	-5.6788E-06	417.5205979053995	69.167	0.33446	69.167	69.012	69.347	0					12	11	2	0	0	0	0.31003	1	16159	16159		7.4771	1.2852	1	355130	+		14065	10851	9242	9352	19169	19169					-0.07371536602272499
NIDCTWNIE	9	Unmodified	_NIDCTWNIE_					0	0	0		ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7798461914062	2	554.242406	1106.47026	0.2939	0.00016289	0.067855	3.7608E-05	0.36175	0.0002005	554.2422838498373	90.006	0.67737	90.04	89.876	90.553	0.034065					41	27	2	0	0	0	0.24263	1	22486	22486		12.532	0	1	652110			14066	3402	9243	9353	19170	19170					-0.07871674430452913
NIDKQFINM	9	Unmodified	_NIDKQFINM_					0	0	0			REV__nc|ENSG00000142405|P59046-4|NLRP12	REV__nc|ENSG00000142405|P59046-4|NLRP12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7854614257812	2	561.784241	1121.55393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.92	1	103.96	103.46	104.46	0.03791								0	0	0	0.28527	1	26557	26557		2.0598	0.21551	1		+		14067	9429	9244	9354	19171	19171					-0.0019851826273225015
NIDQQQEI	8	Unmodified	_NIDQQQEI_					0	0	0		ENST00000580908.1_1_9:98788183-98790081:-|nuORF	ENST00000580908.1_1_9:98788183-98790081:-|nuORF	ENST00000580908.1_1_9:98788183-98790081:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.76416015625	2	494.240721	986.466889	0.17522	8.6599E-05	0.18137	8.9638E-05	0.35658	0.00017624	494.2407735231576	34.6	0.49599	34.677	34.518	35.014	0.076244					36	21	2	0	0	0	0.35759	1	5555	5555		10.074	10.074	1	35574			14068	7217	9245	9355	19172	19172					-0.026886012128102266
NIDTCSFNGPK	11	Unmodified	_NIDTCSFNGPK_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2907104492188	2	598.274238	1194.53392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.108	1	39.108	38.608	39.608	0								0	0	0	0.32709	1	7023	7023		5.2969	1.3525	1		+		14069	12612	9246	9356	19173	19173					-0.055563139933383354
NIDTCSFNGPK	11	Unmodified	_NIDTCSFNGPK_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.290771484375	2	598.274238	1194.53392	0.24617	0.00014728	-0.73532	-0.00043992	-0.48915	-0.00029265	598.2739276114269	38.075	1.5929	38.159	37.744	39.337	0.084476					123	59	3	0	0	0	0.40693	1	6821	6821		2.7352	0.23671	1	95082	+		14070	12612	9246	9356	19174	19174					-0.055563139933383354
NIDVNRFA	8	Unmodified	_NIDVNRFA_					0	0	0			REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF	REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7485046386719	2	474.748516	947.482479	-0.20152	-9.5673E-05	0.14678	6.9682E-05	-0.054748	-2.5991E-05	474.74851965974545	34.749	0.94373	34.749	34.535	35.479	0					73	34	3	0	0	0	0.4433	1	5748	5748		20.454	4.6064	1	353990	+		14071	11922	9247	9357	19175	19175					0.0066373009490234836
NIDVNRFA	8	Unmodified	_NIDVNRFA_					0	0	0			REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF	REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7484436035156	2	474.748516	947.482479	-0.19136	-9.0849E-05	-0.2628	-0.00012476	-0.45416	-0.00021561	474.74853506357226	34.682	0.91312	34.758	34.466	35.379	0.076248					107	39	5	0	0	0	0.4433	1	5597	5597		20.454	0	1	313620	+		14072	11922	9247	9357	19176	19176					0.0066373009490234836
NIDVREPEL	9	Unmodified	_NIDVREPEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7853393554688	2	542.785296	1083.55604	0.19747	0.00010718	-0.28682	-0.00015568	-0.089348	-4.8497E-05	542.7851802313866	51.102	0.67429	51.102	50.827	51.501	0					52	22	3	0	0	0	0.016057	2	10667	10624;10667		61.09	20.851	1	521590			14073	3517	9248	9358	19177;19178	19178					0.01760233746722406
NIDVREPEL	9	Unmodified	_NIDVREPEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.785400390625	2	542.785296	1083.55604	0.34917	0.00018953	-0.085549	-4.6435E-05	0.26362	0.00014309	542.785152941615	51.079	0.70231	51.149	50.854	51.556	0.069878					60	27	4	0	0	0	0.037699	2	10514	10467;10514		46.022	12.577	1	407820			14074	3517	9248	9358	19179;19180	19180					0.01760233746722406
NIEGPDAKL	9	Unmodified	_NIEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7562561035156	2	478.756007	955.497461	-0.16675	-7.983E-05	0.088393	4.2319E-05	-0.078352	-3.7512E-05	478.7563034316284	39.194	2.2078	39.194	38.918	41.126	0					209	79	5	0	0	0	7.7852E-13	9	7045	7000;7045;7092;7135;7182;7232;7277;7323;7373		184.36	36.087	1	6768200			14075	2279	9249	9359	19181;19182;19183;19184;19185;19186;19187;19188;19189	19182					0.01793177172248761
NIEGPDAKL	9	Unmodified	_NIEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7563171386719	2	478.756007	955.497461	-0.072796	-3.4852E-05	0.016321	7.8138E-06	-0.056475	-2.7038E-05	478.75624959147865	39.104	1.856	39.191	38.885	40.741	0.08688					190	72	5	0	0	0	2.5324E-06	7	6889	6843;6889;6932;6974;7019;7066;7110		155.95	34.42	1	5544000			14076	2279	9249	9359	19190;19191;19192;19193;19194;19195;19196	19191					0.01793177172248761
NIEGPEGKL	9	Unmodified	_NIEGPEGKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7559814453125	2	478.756007	955.497461	-0.072796	-3.4852E-05	0.016321	7.8138E-06	-0.056475	-2.7038E-05	478.75624959147865	39.104	1.856	39.191	38.885	40.741	0.08688					190	72	5	0	0	0	0.18398	1	7160	7160		20.415	0	1	5544000			14077	2279	9250	9360	19197	19197					0.01793177172248761
NIGIMRMIL	9	Unmodified	_NIGIMRMIL_					0	0	0			REV__ENST00000532461.5_1_11:110102596-110108435:-|nuORF	REV__ENST00000532461.5_1_11:110102596-110108435:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7942504882812	2	530.803922	1059.59329	0.29362	0.00015585	2.7822	0.0014768	3.0758	0.0016327	530.8054243201414	58.232	0.40918	58.302	58.184	58.593	0.070477					20	14	2	0	0	0	0.25979	1	12756	12756		11.64	0	1	97509	+		14078	12363	9251	9361	19198	19198					0.06587910487132831
NIHFNSSS	8	Unmodified	_NIHFNSSS_					0	0	0			REV__ENSG00000171346|ENST00000254043|KRT15	REV__ENSG00000171346|ENST00000254043|KRT15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2095031738281	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.938	1	88.938	88.438	89.438	0								0	0	0	0.38822	1	22180	22180		2.3027	0	1		+	+	14079	7840	9252	9362	19199	19199					-0.05213122210182064
NIHFNSSS	8	Unmodified	_NIHFNSSS_					0	0	0			REV__ENSG00000171346|ENST00000254043|KRT15	REV__ENSG00000171346|ENST00000254043|KRT15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2095947265625	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.84	1	105.84	105.34	106.34	0								0	0	0	0.38822	1	27277	27277		2.3027	1.6124	1		+	+	14080	7840	9252	9362	19200	19200					-0.05213122210182064
NIHLAVNFL	9	Unmodified	_NIHLAVNFL_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2767944335938	2	520.798009	1039.58147	0.22998	0.00011977	-1.3938	-0.00072589	-1.1638	-0.00060612	520.7969663441414	83.621	0.6967	83.643	83.251	83.948	0.021751					51	24	3	0	0	0	0.23598	1	20495	20495		15.847	3.3156	1	177480			14081	5400	9253	9363	19201	19201					0.06325753059809358
NIHLAVNFL	9	Unmodified	_NIHLAVNFL_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	520.798009	1039.58147	0.58042	0.00030228	-2.0462	-0.0010657	-1.4658	-0.0007634	520.7967546240576	83.722	0.77179	83.722	83.279	84.051	0	0.039497	-0.00023343	NaN	15.847	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170650			14082	5400	9253	9363							0.06325753059809358
NIHNDFEQ	8	Unmodified	_NIHNDFEQ_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B;REV__ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.3165588378906	2	508.725238	1015.43592	-0.14279	-7.2641E-05	0.033742	1.7165E-05	-0.10905	-5.5476E-05	508.72531852616754	28.592	0.32068	28.674	28.512	28.833	0.082132					34	16	3	0	0	0	0.3576	1	3715	3715		2.5775	0	1	40674	+		14083	10561;10211	9254	9364	19202	19202					-0.07117754527041598
NIIKRYCFV	9	Unmodified	_NIIKRYCFV_					0	0	0		ENST00000467500.1_1_6:111678104-111680097:-|nuORF	ENST00000467500.1_1_6:111678104-111680097:-|nuORF	ENST00000467500.1_1_6:111678104-111680097:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.320556640625	2	578.320794	1154.62703	0.36581	0.00021156	-0.39102	-0.00022613	-0.025207	-1.4578E-05	578.3207833615492	87.658	0.80272	87.688	87.582	88.385	0.030037					40	28	3	0	0	0	0.33704	1	21727	21727		1.8442	0.51471	1	125470			14084	6645	9255	9365	19203	19203					0.055906552505121
NIILYCHWH	9	Unmodified	_NIILYCHWH_					0	0	0			REV__ENST00000358015.7_1_9:110093006-110093297:+|nuORF	REV__ENST00000358015.7_1_9:110093006-110093297:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.793212890625	2	599.794943	1197.57533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.64	1	16.64	16.14	17.14	0								0	0	0	0.2927	1	767	767		0.52476	0.066424	1		+		14085	11515	9256	9366	19204	19204					-0.015550884433650936
NIIREEAVL	9	Unmodified	_NIIREEAVL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8060913085938	2	528.806031	1055.59751	0.18088	9.5648E-05	-0.20638	-0.00010914	-0.025508	-1.3489E-05	528.8060080742944	50.705	0.46753	50.705	50.489	50.957	0					37	15	4	0	0	0	0.081383	1	10522	10522		36.506	6.6656	1	238550			14086	1395	9257	9367	19205	19205					0.07193414506036788
NIIREEAVL	9	Unmodified	_NIIREEAVL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8057861328125	2	528.806031	1055.59751	0.28793	0.00015226	-0.21093	-0.00011154	0.077007	4.0722E-05	528.8059336266382	50.661	0.46369	50.734	50.5	50.964	0.07312					36	16	3	0	0	0	0.14444	1	10355	10355		24.991	6.8446	1	164830			14087	1395	9257	9367	19206	19206					0.07193414506036788
NILAKRLLILP	11	Unmodified	_NILAKRLLILP_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.42626953125	2	632.42919	1262.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.07	1	108.07	107.57	108.57	0								0	0	0	0.34113	1	27874	27874		0.35063	0.043601	1				14088	2237	9258	9368	19207	19207					0.22291954075762987
NILAKRLLILP	11	Unmodified	_NILAKRLLILP_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.4305419921875	2	632.42919	1262.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.21	1	108.21	107.71	108.71	0								0	0	0	0.34113	1	27908	27908		0.35063	0.043601	1				14089	2237	9258	9368	19208	19208					0.22291954075762987
NILEQYKNK	9	Unmodified	_NILEQYKNK_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7927856445312	2	575.316763	1148.61897	0.41262	0.00023739	3.4493	0.0019844	3.8619	0.0022218	575.3196504547001	75.378	0.33631	75.378	75.225	75.561	0					22	12	2	0	0	0	0.2418	1	18032	18032		13.906	0.86358	1	86728	+		14090	9378	9259	9369	19209	19209					0.05060799534749094
NINAIKHF	8	Unmodified	_NINAIKHF_					0	0	0			REV__ACTN2|p.V100I|1|0.33|ENSG00000077522|chr1:236718950-236718950|G/A|missense_variant	REV__ACTN2|p.V100I|1|0.33|ENSG00000077522|chr1:236718950-236718950|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2652282714844	2	478.769252	955.52395	0.082387	3.9444E-05	-0.044509	-2.131E-05	0.037877	1.8134E-05	478.76931924308076	47.081	0.41472	47.081	46.878	47.293	0					22	13	2	0	0	0	0.3576	1	9488	9488		2.3027	0	1	83151	+		14091	7692	9260	9370	19210	19210					0.0444091085423679
NINKLQELD	9	Unmodified	_NINKLQELD_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.78271484375	2	543.793121	1085.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.149	1	47.149	46.649	47.649	0								0	0	0	0.21527	1	9453	9453		15.847	1.0089	1				14092	5245	9261	9371	19211	19211					0.032325202637593975
NIPCHTCAED	10	Unmodified	_NIPCHTCAED_					0	0	0			REV__ENSG00000133216|ENST00000374630|EPHB2	REV__ENSG00000133216|ENST00000374630|EPHB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2162475585938	2	551.718241	1101.42193	0.1639	9.0427E-05	-3.4433	-0.0018997	-3.2794	-0.0018093	551.7171271218775	34.9	0.16782	34.9	34.776	34.944	0					7	5	2	0	0	0	0.31838	1	5759	5759		1.4819	0.68827	1	11201	+		14093	9145	9262	9372	19212	19212					-0.12472491341986824
NIQKGGLLDF	10	Unmodified	_NIQKGGLLDF_					0	0	0			REV__nc|ENSG00000186417|Q6ZMI3-2|GLDN	REV__nc|ENSG00000186417|Q6ZMI3-2|GLDN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7900390625	2	552.806031	1103.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.674	1	79.7	79.2	80.2	0.026436								0	0	0	0.33156	1	19204	19204		10.074	1.9184	1		+		14094	10703	9263	9373	19213	19213					0.04985414506040797
NISITLDGNNF	11	Unmodified	_NISITLDGNNF_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7693481445312	2	604.30131	1206.58807	0.87889	0.00053111	0.051252	3.0972E-05	0.93014	0.00056208	604.8041848076712	70.603	0.070221	70.663	70.621	70.691	0.060562					4	2	2	0	0	0	0.31057	1	16424	16424		5.2969	1.3525	1	39106	+		14095	10747	9264	9374	19214	19214					-0.006963985701304409
NITQSCQLRL	10	Unmodified	_NITQSCQLRL_					0	0	0		nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.31396484375	2	588.313697	1174.61284	0.13948	8.2057E-05	2.3495	0.0013823	2.489	0.0014643	588.3138121538099	72.53	0.82483	72.53	72.228	73.053	0					92	28	5	0	0	0	0.24525	1	17214	17214		28.495	2.2264	1	840230			14096	3153	9265	9375	19215	19215					0.03251958031569302
NITQSCQLRL	10	Unmodified	_NITQSCQLRL_					0	0	0		nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3139038085938	2	588.313697	1174.61284	0.386	0.00022709	2.2663	0.0013333	2.6523	0.0015604	588.3136031981052	72.45	0.80424	72.506	72.207	73.012	0.055939					89	27	5	0	0	0	0.27736	1	17043	17043		24.991	0	1	913150			14097	3153	9265	9375	19216	19216					0.03251958031569302
NIVHRGVG	8	Unmodified	_NIVHRGVG_					0	0	0		nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.2460021972656	2	426.245944	850.477334	0.15305	6.5239E-05	0.056677	2.4158E-05	0.20973	8.9397E-05	426.2459288531431	82.623	1.4446	82.645	81.969	83.414	0.021744					113	51	5	0	0	0	0.53423	1	20124	20124		5.2307	0	1	2541300			14098	7444	9266	9376	19217	19217					0.04611471022963087
NIVNAPNKEL	10	Unmodified	_NIVNAPNKEL_					0	0	0			REV__ENST00000328747.11_1_7:64865258-64865408:+|nuORF	REV__ENST00000328747.11_1_7:64865258-64865408:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.3079833984375	2	556.308938	1110.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.69	1	85.69	85.19	86.19	0								0	0	0	0.33599	1	21194	21194		4.897	0.56777	1		+		14099	11415	9267	9377	19218	19218					0.0524451301771478
NIWVAFDIMC	10	Unmodified	_NIWVAFDIMC_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.30859375	2	606.28302	1210.55149	0.86433	0.00052403	0.11178	6.7771E-05	0.97612	0.0005918	606.2832801971389	92.474	0.34067	92.474	92.294	92.634	0					17	12	2	0	0	0	0.31731	1	23303	23303		6.2058	1.8765	1	77893			14100	4994	9268	9378	19219	19219					-0.045366899920736614
NIYVSHREK	9	Unmodified	_NIYVSHREK_					0	0	0		tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8060913085938	2	573.306729	1144.59891	0.28288	0.00016218	-0.18484	-0.00010597	0.098035	5.6204E-05	573.3073385312689	102.01	0.11085	102.01	101.98	102.09	0					18	6	4	0	0	0	0.25579	1	26160	26160		4.3292	0	1	485510			14101	13543	9269	9379	19220	19220					0.03239048594787164
NIYYPSKKMT	10	Unmodified	_NIYYPSKKMT_					0	0	0		VNN1|p.H268Y|1|0.34|ENSG00000112299|chr6:132693048-132693048|G/A|missense_variant	VNN1|p.H268Y|1|0.34|ENSG00000112299|chr6:132693048-132693048|G/A|missense_variant	VNN1|p.H268Y|1|0.34|ENSG00000112299|chr6:132693048-132693048|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.9185180664062	2	622.820824	1243.62709	0.20497	0.00012766	0.82345	0.00051286	1.0284	0.00064052	623.3239577224974	82.048	0.79695	82.07	81.523	82.32	0.021866					53	28	3	0	0	0	0.44938	1	19859	19859		4.897	0.95262	1	185020			14102	13763	9270	9380	19221	19221					0.015026104598518941
NIYYPSKKMT	10	Unmodified	_NIYYPSKKMT_					0	0	0		VNN1|p.H268Y|1|0.34|ENSG00000112299|chr6:132693048-132693048|G/A|missense_variant	VNN1|p.H268Y|1|0.34|ENSG00000112299|chr6:132693048-132693048|G/A|missense_variant	VNN1|p.H268Y|1|0.34|ENSG00000112299|chr6:132693048-132693048|G/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	622.820824	1243.62709	0.40437	0.00025185	0.41794	0.0002603	0.82231	0.00051215	623.3226457528345	81.885	0.50865	81.885	81.662	82.17	0	-0.092284	-0.00030438	NaN	4.897	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159660			14103	13763	9270	9380							0.015026104598518941
NKDRNQDNLF	10	Unmodified	_NKDRNQDNLF_					0	0	0			REV__ENSG00000112972|ENST00000325110|HMGCS1	REV__ENSG00000112972|ENST00000325110|HMGCS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.56097412109375	3	421.874064	1262.60036	0.30778	0.00012985	4.0622	0.0017137	4.37	0.0018436	421.8755583038648	53.788	0.25066	53.854	53.789	54.04	0.06543					10	8	2	0	0	0	0.31826	1	11312	11312		2.8433	0.56051	1	33895	+		14104	8730	9271	9381	19222	19222					-0.020433621071106245
NKFPYLDR	8	Unmodified	_NKFPYLDR_					0	0	0			REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF	REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7778930664062	2	526.779816	1051.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.001	1	18.001	17.501	18.501	0								0	0	0	0.38822	1	1032	1032		0.69038	0	1		+		14105	11199	9272	9382	19223	19223					0.02136876163058332
NKGMSEEI	8	Unmodified	_NKGMSEEI_					0	0	0			REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.8802185058594	2	454.213117	906.411682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.32	1	100.32	99.825	100.82	0								0	0	0	0.38822	1	25645	25645		2.3027	0	1		+		14106	13053	9273	9383	19224	19224					-0.04526731004921203
NKGTNIKR	8	Unmodified	_NKGTNIKR_					0	0	0			REV__ENSG00000153317|ENST00000518721|ASAP1	REV__ENSG00000153317|ENST00000518721|ASAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7772216796875	2	465.777608	929.540663	0.21375	9.9561E-05	-0.27498	-0.00012808	-0.061222	-2.8516E-05	465.77744294207014	74.42	0.95703	74.469	74.071	75.028	0.048546					47	34	2	0	0	0	0.53894	1	17640	17640		2.0598	0	1	173540	+		14107	9693	9274	9384	19225	19225					0.07307411740168845
NKHKCKMV	8	Unmodified	_NKHKCKMV_					0	0	0			REV__ENSG00000006837|ENST00000265334|CDKL3	REV__ENSG00000006837|ENST00000265334|CDKL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.26593017578125	2	494.264964	986.515376	0.10295	5.0886E-05	-0.94555	-0.00046735	-0.84259	-0.00041646	494.26471305149994	33.586	0.23315	33.66	33.593	33.826	0.074322					13	9	2	0	0	0	0.53858	1	5277	5277		2.3027	1.6124	1	29445	+		14108	7948	9275	9385	19226	19226					0.021578976217483614
NKHKPWLE	8	Unmodified	_NKHKPWLE_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.285888671875	2	526.287808	1050.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.505	1	15.505	15.005	16.005	0								0	0	0	0.38822	1	556	556		0.69038	0	1				14109	4450	9276	9386	19227	19227					0.03780582400008825
NKIPCVVV	8	Unmodified	_NKIPCVVV_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.879638671875	2	436.257131	870.499709	0.95303	0.00041576	-1.2283	-0.00053586	-0.27528	-0.00012009	436.25620901312794	81.584	0.19849	81.584	81.434	81.632	0					9	6	2	0	0	0	0.3576	1	19938	19938		0.79363	0.10326	1	25956			14110	3212	9277	9387	19228	19228					0.05927934376347821
NKKKRLKGHK	10	Unmodified	_NKKKRLKGHK_					0	0	0			REV__ENST00000603137.1_1_2:28238673-28239105:-|nuORF	REV__ENST00000603137.1_1_2:28238673-28239105:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.9067993164062	2	618.904205	1235.79386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.57	1	102.62	102.12	103.12	0.040916								0	0	0	0.33984	1	26165	26165		0.40072	0.050084	1		+		14111	12630	9278	9388	19229	19229					0.18539264190462745
NKKQPYYY	8	Unmodified	_NKKQPYYY_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2780151367188	2	552.279649	1102.54475	0.34685	0.00019156	-1.1091	-0.00061252	-0.76223	-0.00042096	552.279025513208	17.984	0.2435	18.068	17.963	18.206	0.083696					62	29	3	0	0	0	0.53817	1	955	955		2.5775	0.51773	1	36126			14112	587	9279	9389	19230	19230					-0.0024254355676021078
NKLKIKRK	8	Unmodified	_NKLKIKRK_					0	0	0			REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.3587646484375	2	514.358568	1026.70258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.95	1	112.95	112.45	113.45	0								0	0	0	0.38822	1	28949	28949		0.69038	0	1		+		14113	13294	9280	9390	19231	19231					0.19030000493103216
NKLKIKRK	8	Unmodified	_NKLKIKRK_					0	0	0			REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.3580932617188	2	514.358568	1026.70258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.22	1	113.22	112.72	113.72	0								0	0	0	0.38822	1	29009	29009		0.69038	0	1		+		14114	13294	9280	9390	19232	19232					0.19030000493103216
NKLKIKRK	8	Unmodified	_NKLKIKRK_					0	0	0			REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.3585205078125	2	514.358568	1026.70258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.55	1	116.56	116.06	117.06	0.013062								0	0	0	0.38822	1	29556	29556		0.69038	0	1		+		14115	13294	9280	9390	19233	19233					0.19030000493103216
NKLSLNLYE	9	Unmodified	_NKLSLNLYE_					0	0	0		ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2982788085938	2	547.298039	1092.58152	-0.2157	-0.00011805	-0.025842	-1.4143E-05	-0.24154	-0.0001322	547.2979031251044	22.948	0.33782	22.948	22.84	23.178	0					50	31	2	0	0	0	0.33849	1	2281	2281		1.6526	0	1	21962			14116	1553	9281	9391	19234	19234					0.038937082691290925
NKLSSFDDF	9	Unmodified	_NKLSSFDDF_					0	0	0			REV__tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	REV__tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.3213500976562	2	536.750921	1071.48729	0.41759	0.00022414	2.6933	0.0014456	3.1109	0.0016698	536.7523038839628	59.442	0.69226	59.514	59.043	59.735	0.072338					35	27	2	0	0	0	0.24263	1	13053	13053		12.532	3.1841	1	122410	+		14117	13049	9282	9392	19235	19235					-0.04559430552990307
NKNENQSF	8	Unmodified	_NKNENQSF_					0	0	0			REV__ENSG00000174738|ENST00000312521|NR1D2	REV__ENSG00000174738|ENST00000312521|NR1D2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7243347167969	2	490.725238	979.435923	0.030146	1.4793E-05	-0.35772	-0.00017554	-0.32757	-0.00016075	490.725007584767	34.463	0.54681	34.539	34.307	34.854	0.076244					34	24	2	0	0	0	0.53118	1	5479	5479		7.2892	0	1	57275	+		14118	10355	9283	9393	19236	19236					-0.0546175452703892
NKNENQSF	8	Unmodified	_NKNENQSF_					0	0	0			REV__ENSG00000174738|ENST00000312521|NR1D2	REV__ENSG00000174738|ENST00000312521|NR1D2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2450866699219	2	490.725238	979.435923	0.030146	1.4793E-05	-0.35772	-0.00017554	-0.32757	-0.00016075	490.725007584767	34.463	0.54681	34.539	34.307	34.854	0.076244					34	24	2	0	0	0	0.3576	1	5541	5541		3.9444	0	1	57275	+		14119	10355	9283	9393	19237	19237					-0.0546175452703892
NKNEYIDCTIF	11	Unmodified	_NKNEYIDCTIF_					0	0	0			REV__tr|U7SRV9|U7SRV9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01448PE=4SV=1	REV__tr|U7SRV9|U7SRV9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01448PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.87994384765625	3	453.879827	1358.61765	-0.36903	-0.0001675	0.25309	0.00011487	-0.11595	-5.2626E-05	453.8799566170443	41.644	3.4403	41.644	40.593	44.034	0					347	122	4	0	0	0	0.36721	2	8153	8014;8153		10.315	3.6918	1	629200	+		14120	13140	9284	9394	19238;19239	19239					-0.047312026163126575
NKNFDDESIR	10	Unmodified	_NKNFDDESIR_					0	0	0			REV__tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	REV__tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.8057861328125	2	619.294016	1236.57348	-0.15303	-9.4769E-05	-0.070399	-4.3598E-05	-0.22343	-0.00013837	619.2938457596703	58.596	0.64738	58.666	58.322	58.969	0.070477					38	22	2	0	0	0	0.31712	1	12851	12851		6.7232	0.99131	1	92631	+		14121	13187	9285	9395	19240	19240					-0.03534470718295779
NKNVFINCLSS	11	Unmodified	_NKNVFINCLSS_					0	0	0		nc|ENSG00000184305|Q9C0I3-2|CCSER1;ENSG00000184305|ENST00000509176|CCSER1	nc|ENSG00000184305|Q9C0I3-2|CCSER1	nc|ENSG00000184305|Q9C0I3-2|CCSER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8126831054688	2	619.81353	1237.61251	-0.066985	-4.1518E-05	-1.0471	-0.00064901	-1.1141	-0.00069053	619.8120598841382	62.187	0.43281	62.187	62.018	62.451	0					35	15	3	0	0	0	0.39906	1	14011	14011		4.5289	1.2476	1	156430			14122	4967	9286	9396	19241	19241					0.0032053831173470826
NKPHTLLY	8	Unmodified	_NKPHTLLY_					0	0	0			REV__ENST00000432615.5_1_7:158447451-158457424:-|nuORF	REV__ENST00000432615.5_1_7:158447451-158457424:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.30670166015625	2	493.276909	984.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.37	1	106.4	105.9	106.9	0.029739								0	0	0	0.38822	1	27233	27233		0.79363	0	1		+		14123	9553	9287	9397	19242	19242					0.04637777651430497
NKRLGVCGWIL	11	Unmodified	_NKRLGVCGWIL_					0	0	0		nc|ENSG00000133115|Q8TAV4-2|STOML3;ENSG00000133115|ENST00000379631|STOML3	nc|ENSG00000133115|Q8TAV4-2|STOML3	nc|ENSG00000133115|Q8TAV4-2|STOML3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.2345275878906	3	420.241142	1257.7016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.005	1	40.005	39.505	40.505	0								0	0	0	0.33341	1	7295	7295		3.0723	0.44103	1				14124	2616	9288	9398	19243	19243					0.08305418061922865
NKRNQCLL	8	Unmodified	_NKRNQCLL_					0	0	0		ENST00000553932.5_1_14:39308236-39359955:-|nuORF	ENST00000553932.5_1_14:39308236-39359955:-|nuORF	ENST00000553932.5_1_14:39308236-39359955:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.77117919921875	2	494.771468	987.528384	0.8128	0.00040215	-1.1423	-0.00056518	-0.32951	-0.00016303	494.7707657776615	82.051	0.53262	82.051	81.78	82.313	0					41	18	3	0	0	0	0.52924	2	20066	20066;20116		8.5933	1.304	1	211870			14125	7113	9289	9399	19244;19245	19244					0.03412052005489841
NKRWMRNK	8	Unmodified	_NKRWMRNK_					0	0	0			REV__ENSG00000163751|ENST00000296046|CPA3	REV__ENSG00000163751|ENST00000296046|CPA3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.811279296875	2	566.811459	1131.60837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.51	1	117.51	117.01	118.01	0								0	0	0	0.38822	1	29805	29805		0.69038	0.088878	1		+		14126	8231	9290	9400	19246	19246					0.04782538399331315
NLADPQAL	8	Unmodified	_NLADPQAL_					0	0	0			REV__ENSG00000181374|ENST00000225844|CCL13	REV__ENSG00000181374|ENST00000225844|CCL13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.2241516113281	2	421.224342	840.434132	0.36156	0.0001523	0.82413	0.00034714	1.1857	0.00049944	421.2247899971104	52.557	0.36117	52.557	52.368	52.729	0					22	12	2	0	0	0	0.35069	1	11099	11099		20.454	0	1	106780	+		14127	10531	9291	9401	19247	19247					0.0075323645500020575
NLADPQAL	8	Unmodified	_NLADPQAL_					0	0	0			REV__ENSG00000181374|ENST00000225844|CCL13	REV__ENSG00000181374|ENST00000225844|CCL13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.2245788574219	2	421.224342	840.434132	0.13273	5.5908E-05	1.1407	0.00048049	1.2734	0.0005364	421.22489953170356	52.462	0.31186	52.529	52.412	52.724	0.067173					19	10	2	0	0	0	0.11372	1	10926	10926		52.268	0	1	82416	+		14128	10531	9291	9401	19248	19248					0.0075323645500020575
NLADPQAL	8	Unmodified	_NLADPQAL_					0	0	0			REV__ENSG00000181374|ENST00000225844|CCL13	REV__ENSG00000181374|ENST00000225844|CCL13	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	421.224342	840.434132	0.13273	5.5908E-05	1.1407	0.00048049	1.2734	0.0005364	421.22489953170356	52.462	0.31186	52.529	52.412	52.724	0.067173	-0.013737	7.1453E-05	NaN	52.268	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82416	+		14129	10531	9291	9401							0.0075323645500020575
NLAILAFFGF	10	Unmodified	_NLAILAFFGF_					0	0	0		ENSG00000119899|ENST00000355773|SLC17A5;nc|ENSG00000119899|Q9NRA2-2|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.8091430664062	2	556.810585	1111.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.532	1	84.532	84.032	85.032	0								0	0	0	0.33341	1	20840	20840		7.9102	1.187	1				14130	2094	9292	9402	19249	19249					0.055278078623587135
NLALAQHQV	9	Unmodified	_NLALAQHQV_					0	0	0			REV__nc|ENSG00000278023|Q8NG50-7|RDM1	REV__nc|ENSG00000278023|Q8NG50-7|RDM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.78021240234375	2	497.277441	992.540328	-0.0011232	-5.5855E-07	3.0417	0.0015125	3.0405	0.001512	497.2775782215656	31.148	0.62597	31.222	31.008	31.634	0.07378					61	31	3	0	0	0	0.30005	1	4538	4538		6.7232	1.9672	1	26136	+		14131	11144	9293	9403	19250	19250					0.04375992020334252
NLALAQHQV	9	Unmodified	_NLALAQHQV_					0	0	0			REV__nc|ENSG00000278023|Q8NG50-7|RDM1	REV__nc|ENSG00000278023|Q8NG50-7|RDM1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	497.277441	992.540328	-0.0011232	-5.5855E-07	3.0417	0.0015125	3.0405	0.001512	497.2775782215656	31.148	0.62597	31.222	31.008	31.634	0.07378	-0.021517	-0.00014273	NaN	6.7232	61	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26136	+		14132	11144	9293	9403							0.04375992020334252
NLDRPRDI	8	Unmodified	_NLDRPRDI_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7734375	2	499.772522	997.530492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.44	1	61.513	61.013	62.013	0.073421								0	0	0	0.38796	1	13659	13659		14.582	0	1				14133	2678	9294	9404	19251	19251					0.03162804014948506
NLEDDEYL	8	Unmodified	_NLEDDEYL_					0	0	0		tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1;tr|U7T3F2|U7T3F2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00619PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7189636230469	2	505.719287	1009.42402	0.53015	0.00026811	-0.57912	-0.00029287	-0.048967	-2.4764E-05	505.71887080418264	67.101	0.52848	67.101	66.9	67.428	0					24	19	2	0	0	0	0.53118	1	15563	15563		7.2892	0	1	188760			14134	13459	9295	9405	19252	19252					-0.08031416060907759
NLEDDEYL	8	Unmodified	_NLEDDEYL_					0	0	0		tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1;tr|U7T3F2|U7T3F2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00619PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.71942138671875	2	505.719287	1009.42402	0.65528	0.00033139	-0.64479	-0.00032608	0.010485	5.3027E-06	505.7188289721404	67.072	0.36906	67.137	66.923	67.292	0.065071					20	12	2	0	0	0	0.53118	1	15384	15384		7.2892	0	1	110970			14135	13459	9295	9405	19253	19253					-0.08031416060907759
NLEEYEEW	8	Unmodified	_NLEEYEEW_					0	0	0		nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25	nc|ENSG00000155313|Q9UHP3|USP25	nc|ENSG00000155313|Q9UHP3|USP25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2332763671875	2	556.232561	1110.45057	0.027991	1.5569E-05	-0.26491	-0.00014735	-0.23691	-0.00013178	556.2323609593423	29.345	0.38514	29.345	29.176	29.562	0					36	21	2	0	0	0	0.54097	1	4152	4152		0.69038	0.088878	1	29867			14136	3581	9296	9406	19254	19254					-0.10023727169573249
NLEHKVLL	8	Unmodified	_NLEHKVLL_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7804260253906	2	483.292559	964.570566	-0.0025121	-1.2141E-06	3.4373	0.0016612	3.4347	0.00166	483.29405797599526	95.36	0.21056	95.36	95.194	95.405	0					10	8	2	0	0	0	0.3576	1	24145	24145		2.8892	0	1	28879			14137	4696	9297	9407	19255	19255					0.08686350685513844
NLFEEDYTQ	9	Unmodified	_NLFEEDYTQ_					0	0	0			REV__ENSG00000166352|ENST00000334307|IFTAP	REV__ENSG00000166352|ENST00000334307|IFTAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.8320922851562	2	579.751118	1157.48768	0.91687	0.00053156	-0.16501	-9.5662E-05	0.75187	0.0004359	580.7511486665738	80.321	0.42741	80.321	80.197	80.625	0					26	14	3	0	0	0	0.25051	1	19609	19609		7.9102	0	1	506340	+		14138	10075	9298	9408	19256	19256					-0.08476055623805223
NLFIIKKSLTF	11	Unmodified	_NLFIIKKSLTF_					0	0	0		ENST00000265713.6_2_8:41789140-41789482:-|nuORF	ENST00000265713.6_2_8:41789140-41789482:-|nuORF	ENST00000265713.6_2_8:41789140-41789482:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.5180358886719	3	441.939346	1322.79621	0.1567	6.9251E-05	0.90128	0.00039831	1.058	0.00046756	442.27417443481454	51.016	0.17044	51.086	50.96	51.131	0.069874					8	6	2	0	0	0	0.31101	1	10472	10472		0.45452	0	1	72958			14139	5900	9299	9409	19257	19257					0.1477225508488118
NLFRAPYF	8	Unmodified	_NLFRAPYF_					0	0	0		ENST00000514704.5_1_4:146018956-146019220:-|nuORF	ENST00000514704.5_1_4:146018956-146019220:-|nuORF	ENST00000514704.5_1_4:146018956-146019220:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2711791992188	2	514.271627	1026.5287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.22	1	105.26	104.76	105.76	0.034004								0	0	0	0.38822	1	26921	26921		0.79363	0	1				14140	6930	9300	9410	19258	19258					0.01649794996978926
NLGRPQISF	9	Unmodified	_NLGRPQISF_					0	0	0		tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7816772460938	2	516.285266	1030.55598	0.34887	0.00018012	-4.1032	-0.0021184	-3.7543	-0.0019383	516.2834811140896	77.845	0.29221	77.845	77.606	77.899	0					12	9	2	0	0	0	0.25174	1	18737	18737		7.2892	0	1	74538			14141	13576	9301	9411	19259	19259					0.04192278537357197
NLKIEGRHLK	10	Unmodified	_NLKIEGRHLK_					0	0	0			REV__nc|ENSG00000155906|Q9NWS8-2|RMND1	REV__nc|ENSG00000155906|Q9NWS8-2|RMND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.366455078125	2	604.367121	1206.71969	0.68229	0.00041235	-0.85621	-0.00051747	-0.17393	-0.00010512	604.3665261151659	99.832	0.66259	99.832	99.659	100.32	0					89	35	4	0	0	0	0.46827	1	25601	25601		1.3295	0.25807	1	663140	+		14142	9740	9302	9412	19260	19260					0.12459876308275852
NLLLLACVLF	10	Unmodified	_NLLLLACVLF_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8345336914062	2	559.835746	1117.65694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.45	1	107.48	106.98	107.98	0.025711								0	0	0	0.33395	1	27531	27531		7.2892	2.96	1		+		14143	8827	9303	9413	19261	19261					0.10281594195839716
NLLMWHLY	8	Unmodified	_NLLMWHLY_					0	0	0		ENST00000379568.3_1_6:10694946-10695102:+|nuORF	ENST00000379568.3_1_6:10694946-10695102:+|nuORF	ENST00000379568.3_1_6:10694946-10695102:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2871704101562	2	545.281137	1088.54772	-0.12088	-6.5913E-05	0.79221	0.00043198	0.67133	0.00036607	545.2803937146613	29.387	0.35325	29.387	29.155	29.508	0					44	21	3	0	0	0	0.54097	1	4084	4084		0.69038	0	1	22235			14144	6280	9304	9414	19262	19262					0.006990082963966415
NLLPLPYL	8	Unmodified	_NLLPLPYL_					0	0	0			REV__nc|ENSG00000125618|Q06710-2|PAX8	REV__nc|ENSG00000125618|Q06710-2|PAX8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7868347167969	2	471.786579	941.558604	0.064117	3.0249E-05	0.3396	0.00016022	0.40372	0.00019047	471.78663271414547	88.172	0.70608	88.202	87.995	88.701	0.030037					55	27	3	0	0	0	0.49441	1	21875	21875		13.508	0	1	482590	+		14145	8974	9305	9415	19263	19263					0.0854873394232527
NLLRRMWV	8	Unmodified	_NLLRRMWV_					0	0	0		ENST00000559997.5_1_15:89448698-89456595:-|nuORF;ENST00000558352.5_1_15:89449802-89456595:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;ENSG00000140545|ENST00000268150|MFGE8	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.3145141601562	2	544.313303	1086.61205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.105	1	19.194	18.694	19.694	0.089705								0	0	0	0.38822	1	1197	1197		0.69038	0	1				14146	3020	9306	9416	19264	19264					0.07221208173177729
NLLYPRAF	8	Unmodified	_NLLYPRAF_					0	0	0		ENST00000531357.1_1_11:64889042-64889375:-|nuORF	ENST00000531357.1_1_11:64889042-64889375:-|nuORF	ENST00000531357.1_1_11:64889042-64889375:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7816162109375	2	497.279452	992.544351	-0.026144	-1.3001E-05	-0.69973	-0.00034796	-0.72588	-0.00036096	497.2776277982931	31.265	0.60154	31.265	30.951	31.552	0					69	28	4	0	0	0	0.53858	1	4679	4679		2.3027	0	1	27223			14147	7029	9307	9417	19265	19265					0.047780815140413324
NLMDSGRCN	9	Unmodified	_NLMDSGRCN_					0	0	0		ENSG00000154330|ENST00000396396|PGM5;nc|ENSG00000154330|Q15124-2|PGM5	ENSG00000154330|ENST00000396396|PGM5	ENSG00000154330|ENST00000396396|PGM5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7183532714844	2	505.213126	1008.4117	0.02152	1.0872E-05	-2.2874	-0.0011556	-2.2658	-0.0011447	505.2116720165055	39.219	0.45723	39.219	39.004	39.461	0					33	16	4	0	0	0	0.25875	1	7086	7086		1.8442	0	1	123840			14148	3556	9308	9418	19266	19266					-0.0921705427656434
NLNIVQDKIM	10	Unmodified	_NLNIVQDKIM_					0	0	0		NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant;NUFIP2|p.F315Vfs*2|1|0.37|ENSG00000108256|chr17:29287052-29287053|-/T|frameshift_variant;ENSG00000108256|ENST00000225388|NUFIP2	NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.8392333984375	2	594.326273	1186.63799	0.052426	3.1158E-05	0.35098	0.0002086	0.40341	0.00023976	594.8295387218585	72.834	0.23581	72.887	72.772	73.008	0.052574					10	7	2	0	0	0	0.30541	1	17082	17082		19.257	0	1	84302			14149	1582	9309	9419	19267	19267					0.052140128341534364
NLPCPWQPLI	10	Unmodified	_NLPCPWQPLI_					0	0	0		ENST00000420967.5_1_12:118454632-118456902:+|nuORF	ENST00000420967.5_1_12:118454632-118456902:+|nuORF	ENST00000420967.5_1_12:118454632-118456902:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8139038085938	2	590.812802	1179.61105	0.59044	0.00034884	1.6839	0.00099488	2.2744	0.0013437	590.8136685097139	69.473	0.41431	69.473	69.347	69.761	0					29	13	3	0	0	0	0.41688	1	16252	16252		10.074	0.52995	1	242410			14150	6450	9310	9420	19268	19268					0.02842949013620455
NLPCPWQPLI	10	Unmodified	_NLPCPWQPLI_					0	0	0		ENST00000420967.5_1_12:118454632-118456902:+|nuORF	ENST00000420967.5_1_12:118454632-118456902:+|nuORF	ENST00000420967.5_1_12:118454632-118456902:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	590.812802	1179.61105	0.40924	0.00024179	0.94061	0.00055572	1.3498	0.00079751	590.8129149892458	69.341	0.91661	69.404	69.279	70.195	0.062126	-0.034844	-0.00066991	NaN	10.074	46	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274980			14151	6450	9310	9420							0.02842949013620455
NLPDNTAVI	9	Unmodified	_NLPDNTAVI_					0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7554931640625	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.395	1	41.395	40.895	41.895	0								0	0	0	0.19984	1	7713	7713		18.146	1.0335	1		+		14152	7814	9311	9421	19269	19269					0.01793177172248761
NLPDNTAVI	9	Unmodified	_NLPDNTAVI_					0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.75555419921875	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.702	1	41.702	41.202	42.202	0								0	0	0	0.22786	1	7806	7806		13.906	0.86358	1		+		14153	7814	9311	9421	19270	19270					0.01793177172248761
NLPDNTAVI	9	Unmodified	_NLPDNTAVI_					0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7553405761719	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.847	1	41.847	41.347	42.347	0								0	0	0	0.24978	1	7850	7850		9.3831	0.63772	1		+		14154	7814	9311	9421	19271	19271					0.01793177172248761
NLPDNTAVI	9	Unmodified	_NLPDNTAVI_					0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.75537109375	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.431	1	42.431	41.931	42.931	0								0	0	0	0.25287	1	8027	8027		8.7454	0	1		+		14155	7814	9311	9421	19272	19272					0.01793177172248761
NLPDNTAVI	9	Unmodified	_NLPDNTAVI_					0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7557067871094	2	478.756007	955.497461	-0.64534	-0.00030896	-0.071032	-3.4007E-05	-0.71637	-0.00034296	478.7558899424527	41.451	1.7233	41.541	41.089	42.812	0.089764					148	66	4	0	0	0	0.24021	2	7567	7567;7650		13.906	0.86358	1	966490	+		14156	7814	9311	9421	19273;19274	19273					0.01793177172248761
NLPEEYEL	8	Unmodified	_NLPEEYEL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7403564453125	2	503.740022	1005.46549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.67	1	62.742	62.242	63.242	0.072701								0	0	0	0.3782	1	14032	14032		30.637	3.7529	1				14157	1940	9312	9422	19275	19275					-0.03702235301557266
NLPFDLSVL	9	Unmodified	_NLPFDLSVL_					0	0	0			REV__nc|ENSG00000204580|Q08345-2|DDR1	REV__nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.80364990234375	2	509.2844	1016.55425	0.27003	0.00013752	0.55898	0.00028468	0.829	0.0004222	509.2842295552653	79.033	0.52784	79.033	78.815	79.342	0					41	17	3	0	0	0	0.27332	1	19135	19135		10.074	0.6908	1	319110	+		14158	10950	9313	9423	19276	19276					0.04663224728756177
NLPQHPDVEM	10	Unmodified	_NLPQHPDVEM_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2761840820312	2	590.27678	1178.53901	0.047084	2.7793E-05	-0.4377	-0.00025836	-0.39062	-0.00023057	590.2761129457336	45.962	0.58818	45.962	45.703	46.291	0					45	20	3	0	0	0	0.27736	2	9077	9077;9124		24.991	13.496	1	161830			14159	3772	9314	9424	19277;19278	19277					-0.04312010130752242
NLPQHPDVEM	10	Unmodified	_NLPQHPDVEM_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.276611328125	2	590.27678	1178.53901	0.22193	0.000131	-0.4258	-0.00025134	-0.20387	-0.00012034	590.2763582453957	45.889	0.6349	45.974	45.67	46.304	0.085617					41	24	2	0	0	0	0.40359	1	8926	8926		11.495	2.7493	1	134510			14160	3772	9314	9424	19279	19279					-0.04312010130752242
NLPQHPDVEM	10	Unmodified	_NLPQHPDVEM_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	590.27678	1178.53901	0.22193	0.000131	-0.4258	-0.00025134	-0.20387	-0.00012034	590.2763582453957	45.889	0.6349	45.974	45.67	46.304	0.085617	0.0061592	7.1657E-06	NaN	24.991	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134510			14161	3772	9314	9424							-0.04312010130752242
NLPTTIISI	9	Unmodified	_NLPTTIISI_					0	0	0		tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.779296875	2	486.292225	970.569897	-0.033043	-1.6068E-05	-0.011357	-5.5227E-06	-0.0444	-2.1591E-05	486.292188339196	52.438	0.51292	52.438	52.162	52.675	0					25	17	2	0	0	0	0.23216	1	11091	11091		14.838	3.7238	1	127960			14162	13534	9315	9425	19280	19280					0.08343511245811897
NLPVKQWYF	9	Unmodified	_NLPVKQWYF_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8189086914062	2	597.818941	1193.62333	0.67494	0.00040349	-0.50423	-0.00030144	0.17071	0.00010205	597.818504588182	65.971	0.76408	65.971	65.791	66.555	0					43	27	3	0	0	0	0.065541	2	15195	15173;15195		39.957	20.595	1	305130			14163	1006	9316	9426	19281;19282	19282					0.03426308748316842
NLPVKQWYF	9	Unmodified	_NLPVKQWYF_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.820068359375	2	597.818941	1193.62333	0.43891	0.00026239	-0.23406	-0.00013992	0.20485	0.00012246	597.8187252650248	65.994	0.65663	66.061	65.847	66.504	0.066872					45	24	3	0	0	0	0.10833	2	15032	15032;15095		30.637	18.996	1	299680			14164	1006	9316	9426	19283;19284	19283					0.03426308748316842
NLQLNSPLS	9	Unmodified	_NLQLNSPLS_					0	0	0			REV__ENST00000533627.5_1_11:118404537-118405292:+|nuORF	REV__ENST00000533627.5_1_11:118404537-118405292:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7441711425781	2	493.269281	984.52401	-0.1454	-7.1721E-05	-1.4373	-0.00070896	-1.5827	-0.00078068	493.26955875393486	42.545	0.73624	42.634	42.243	42.98	0.089764					62	27	3	0	0	0	0.25699	1	8030	8030		3.5965	0	1	79900	+		14165	9617	9317	9427	19285	19285					0.031128660635772576
NLRAASRSS	9	Unmodified	_NLRAASRSS_					0	0	0		ENST00000319080.7_12:122516865-122517156:+|nuORF	ENST00000319080.7_12:122516865-122517156:+|nuORF	ENST00000319080.7_12:122516865-122517156:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.24658203125	2	481.262322	960.510091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.13	1	107.16	106.66	107.66	0.025711								0	0	0	0.27613	1	27443	27443		3.9444	1.3669	1				14166	6026	9318	9428	19286	19286					0.02825633355143964
NLSTDARQVSA	11	Unmodified	_NLSTDARQVSA_					0	0	0			REV__ENSG00000107372|ENST00000376962|ZFAND5	REV__ENSG00000107372|ENST00000376962|ZFAND5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2960815429688	2	581.296559	1160.57856	0.17354	0.00010088	0.42666	0.00024802	0.6002	0.0003489	581.2969218916453	33.012	0.5886	33.087	32.891	33.479	0.074322					49	23	3	0	0	0	0.38777	1	5043	5043		7.1017	0.37856	1	95290	+		14167	8593	9319	9429	19287	19287					0.00469833144347831
NLTADEESM	9	Unmodified	_NLTADEESM_					0	0	0			REV__ENSG00000136872|ENST00000647789|ALDOB	REV__ENSG00000136872|ENST00000647789|ALDOB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.21148681640625	2	505.210772	1008.40699	0.021521	1.0872E-05	2.3723	0.0011985	2.3938	0.0012094	505.2116720165055	39.219	0.45723	39.219	39.004	39.461	0					33	16	4	0	0	0	0.26684	1	7055	7055		10.824	2.2306	1	123840	+		14168	9255	9320	9430	19288	19288					-0.0968765993834495
NLTDITVQR	9	Unmodified	_NLTDITVQR_					0	0	0		tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.756591796875	2	530.293288	1058.57202	0.050221	2.6632E-05	-0.14838	-7.8686E-05	-0.098162	-5.2054E-05	530.293156635786	34.455	0.86227	34.455	34.254	35.116	0					73	33	3	0	0	0	0.24929	1	5783	5783		9.3831	1.2276	1	170970			14169	13590	9321	9431	19289	19289					0.04507939983614051
NLTDITVQR	9	Unmodified	_NLTDITVQR_					0	0	0		tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7564697265625	2	530.293288	1058.57202	0.13392	7.1015E-05	-0.14992	-7.9503E-05	-0.016007	-8.4885E-06	530.2931269779532	34.414	0.91591	34.49	34.307	35.223	0.076244					80	39	3	0	0	0	0.22912	1	5643	5643		18.146	1.2041	1	146850			14170	13590	9321	9431	19290	19290					0.04507939983614051
NLVAMLLDL	9	Unmodified	_NLVAMLLDL_					0	0	0		tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2908935546875	2	501.288628	1000.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.874	1	77.909	77.409	78.409	0.034485								0	0	0	0.26267	1	18657	18657		6.7232	1.9672	1				14171	13700	9322	9432	19291	19291					0.06244455373735036
NLVDDENDLI	10	Unmodified	_NLVDDENDLI_					0	0	0			REV__DENND5B|p.I1177N|1|0.38|ENSG00000170456|chr12:31389435-31389435|A/T|missense_variant	REV__DENND5B|p.I1177N|1|0.38|ENSG00000170456|chr12:31389435-31389435|A/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.8318481445312	2	580.2775	1158.54045	0.7502	0.00043533	3.7123	0.0021541	4.4625	0.0025895	580.2798248559083	80.186	0.54945	80.209	79.936	80.485	0.023605					22	19	2	0	0	0	0.31645	1	19389	19389		10.151	3.4274	1	80817	+		14172	7877	9323	9433	19292	19292					-0.03248097561004215
NLVIFEVLLFF	11	Unmodified	_NLVIFEVLLFF_					0	0	0		TMEM168|p.A209E|1|0.22|ENSG00000146802|chr7:112784200-112784200|G/T|missense_variant	TMEM168|p.A209E|1|0.22|ENSG00000146802|chr7:112784200-112784200|G/T|missense_variant	TMEM168|p.A209E|1|0.22|ENSG00000146802|chr7:112784200-112784200|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.9327697753906	3	451.93208	1352.77441	0.56311	0.00025449	0.81873	0.00037001	1.3818	0.0006245	451.9323735718666	91.662	0.68932	91.662	91.269	91.958	0					64	25	3	0	0	0	0.41309	1	23051	23051		1.3296	0.82369	1	269100			14173	13431	9324	9434	19293	19293					0.11213450336299502
NLVIFEVLLFF	11	Unmodified	_NLVIFEVLLFF_					0	0	0		TMEM168|p.A209E|1|0.22|ENSG00000146802|chr7:112784200-112784200|G/T|missense_variant	TMEM168|p.A209E|1|0.22|ENSG00000146802|chr7:112784200-112784200|G/T|missense_variant	TMEM168|p.A209E|1|0.22|ENSG00000146802|chr7:112784200-112784200|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	451.93208	1352.77441	0.56311	0.00025449	0.81873	0.00037001	1.3818	0.0006245	451.9323735718666	91.662	0.68932	91.662	91.269	91.958	0	-0.013039	-0.00016362	NaN	1.3296	64	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269100			14174	13431	9324	9434							0.11213450336299502
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2774658203125	2	479.277441	956.540328	0.16345	7.8337E-05	0.11031	5.2868E-05	0.27376	0.00013121	479.27738708472776	78.766	3.0918	78.766	77.899	80.99	0					356	107	4	0	0	0	0.30397	2	19371	19371;19420		6.2058	1.8765	1	1643400			14175	369	9325	9435	19294;19295	19294					0.06031992020336929
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774963378906	2	479.277441	956.540328	0.098532	4.7224E-05	0.19499	9.3454E-05	0.29352	0.00014068	479.27740589104303	78.777	3.1544	78.807	77.792	80.946	0.030159					352	111	4	0	0	0	0.27332	4	18891	18891;19071;19267;19369		10.074	6.2058	1	1861400			14176	369	9325	9435	19296;19297;19298;19299	19296					0.06031992020336929
NLVLALMG	8	Unmodified	_NLVLALMG_					0	0	0			REV__nc|ENSG00000198838|Q15413-3|RYR3	REV__nc|ENSG00000198838|Q15413-3|RYR3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.74700927734375	2	415.743857	829.47316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.641	1	99.683	99.183	100.18	0.042839								0	0	0	0.38822	1	25280	25280		0.79363	0	1		+		14177	10917	9326	9436	19300	19300					0.05160245485035375
NLVLEKSSR	9	Unmodified	_NLVLEKSSR_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.303955078125	2	523.303655	1044.59276	0.21754	0.00011384	0.27522	0.00014402	0.49276	0.00025786	523.3036921489829	82.816	2.4442	82.838	81.969	84.413	0.021744					340	93	4	0	0	0	0.27332	2	20107	20107;20323		10.074	0	1	3939600			14178	3999	9327	9437	19301;19302	19301					0.07224530363305348
NLVSHVLTRR	10	Unmodified	_NLVSHVLTRR_					0	0	0			REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8566284179688	2	597.856921	1193.69929	-0.093081	-5.5649E-05	-0.42101	-0.0002517	-0.51409	-0.00030735	597.8564079419388	90.383	0.57297	90.418	90.109	90.682	0.034065					46	23	3	0	0	0	0.44727	1	22474	22474		5.2969	2.0156	1	224010	+		14179	13016	9328	9438	19303	19303					0.11018705648439209
NLVSLDLGFN	10	Unmodified	_NLVSLDLGFN_					0	0	0		nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43;ENSG00000158113|ENST00000339777|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7577514648438	2	546.290214	1090.56587	-0.191	-0.00010434	0.27917	0.00015251	0.088173	4.8168E-05	546.2903808514416	45.403	0.79446	45.403	44.909	45.703	0					35	27	2	0	0	0	0.31443	1	8814	8814		16.149	3.9084	1	60169			14180	3680	9329	9439	19304	19304					0.024214217521148385
NLVTENMENI	10	Unmodified	_NLVTENMENI_					0	0	0		CACNG7|p.T90M|1|0.21|ENSG00000105605|chr19:53914572-53914572|C/T|missense_variant	CACNG7|p.T90M|1|0.21|ENSG00000105605|chr19:53914572-53914572|C/T|missense_variant	CACNG7|p.T90M|1|0.21|ENSG00000105605|chr19:53914572-53914572|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3430786132812	2	588.781896	1175.54924	0.31045	0.00018279	-2.7761	-0.0016345	-2.4657	-0.0014517	588.7803476365972	90.975	0.59467	91.01	90.602	91.197	0.035446					47	22	4	0	0	0	0.3016	1	22626	22626		16.149	0	1	277240			14181	100	9330	9440	19305	19305					-0.031514471961600066
NLYKKDLL	8	Unmodified	_NLYKKDLL_					0	0	0		nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5;ENST00000553943.1_1_14:69616197-69619695:-|nuORF	nc|ENSG00000139990|Q96JK2-3|DCAF5	nc|ENSG00000139990|Q96JK2-3|DCAF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7840881347656	2	503.800217	1005.58588	0.51402	0.00025896	2.2332	0.0011251	2.7472	0.001384	503.801083718176	97.745	0.67505	97.786	97.755	98.43	0.040855					56	34	2	0	0	0	0.51415	1	24854	24854		10.824	0.75	1	170860			14182	2994	9331	9441	19306	19306					0.08331217482702868
NLYTFDMRAL	10	Unmodified	_NLYTFDMRAL_					0	0	0		CEP135-DCAF13|1|fusion;ENSG00000164934|ENST00000612750|DCAF13	CEP135-DCAF13|1|fusion;ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.310302734375	2	622.310623	1242.60669	-0.713	-0.00044371	0.24928	0.00015513	-0.46372	-0.00028858	622.3108233176667	17.389	0.27438	17.389	17.261	17.535	0					49	33	2	0	0	0	0.44246	1	919	919		6.2058	0	1	26140			14183	122;4041	9332	9442	19307	19307					-0.0049056019993258815
NMAAPSLSRDT	11	Unmodified	_NMAAPSLSRDT_					0	0	0		ENST00000545495.5_1_1:161094264-161102471:-|nuORF	ENST00000545495.5_1_1:161094264-161102471:-|nuORF	ENST00000545495.5_1_1:161094264-161102471:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.78076171875	2	581.779687	1161.54482	0.60255	0.00035055	0.055407	3.2235E-05	0.65796	0.00038279	581.7798601808972	55.56	0.76942	55.56	55.293	56.063	0					70	26	3	0	0	0	0.40055	1	12096	12096		4.1895	0.59301	1	1050600			14184	7075	9333	9443	19308	19308					-0.029489116190688947
NMDRMSLL	8	Unmodified	_NMDRMSLL_					0	0	0			REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7845764160156	2	490.238612	978.462672	0.28689	0.00014064	1.13	0.00055397	1.4169	0.00069461	490.23916233487546	62.346	0.4684	62.419	62.309	62.777	0.072701					21	15	2	0	0	0	0.3576	1	13970	13970		7.9102	0	1	164300	+		14185	7885	9334	9444	19309	19309					-0.027421052317208705
NMLRCLFLE	9	Unmodified	_NMLRCLFLE_					0	0	0		ENST00000282272.14_1_2:197852902-197853037:-|nuORF	ENST00000282272.14_1_2:197852902-197853037:-|nuORF	ENST00000282272.14_1_2:197852902-197853037:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2733764648438	2	569.791012	1137.56747	-0.20275	-0.00011552	-1.1797	-0.0006722	-1.3825	-0.00078772	569.7901671714454	44.388	0.28447	44.388	44.269	44.554	0					22	9	3	0	0	0	0.22912	1	8667	8667		18.146	5.9057	1	67200			14186	5932	9335	9445	19310	19310					0.004190162448594492
NMLRCLFLE	9	Unmodified	_NMLRCLFLE_					0	0	0		ENST00000282272.14_1_2:197852902-197853037:-|nuORF	ENST00000282272.14_1_2:197852902-197853037:-|nuORF	ENST00000282272.14_1_2:197852902-197853037:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2735595703125	2	569.791012	1137.56747	-0.01767	-1.0068E-05	-1.3189	-0.0007515	-1.3366	-0.00076157	569.7902085433623	44.322	0.29178	44.411	44.274	44.566	0.088924					15	9	2	0	0	0	0.21603	1	8477	8477		20.454	3.5113	1	75252			14187	5932	9335	9445	19311	19311					0.004190162448594492
NMRYCHDPLE	10	Unmodified	_NMRYCHDPLE_					0	0	0			REV__nc|ENSG00000101049|Q9HBY8-1|SGK2	REV__nc|ENSG00000101049|Q9HBY8-1|SGK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.2738647460938	2	639.273715	1276.53288	0.3919	0.00025053	-0.74876	-0.00047866	-0.35685	-0.00022813	639.2731352284112	63.371	0.38641	63.371	63.232	63.618	0					19	12	2	0	0	0	0.42335	1	14393	14393		9.3831	1.2276	1	142090	+		14188	12766	9336	9446	19312	19312					-0.09432851633914652
NMRYCHDPLE	10	Unmodified	_NMRYCHDPLE_					0	0	0			REV__nc|ENSG00000101049|Q9HBY8-1|SGK2	REV__nc|ENSG00000101049|Q9HBY8-1|SGK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.8038940429688	2	639.273715	1276.53288	0.3919	0.00025053	-0.74876	-0.00047866	-0.35685	-0.00022813	639.2731352284112	63.371	0.38641	63.371	63.232	63.618	0					19	12	2	0	0	0	0.31708	1	14447	14447		7.609	2.7119	1	142090	+		14189	12766	9336	9446	19313	19313					-0.09432851633914652
NMRYCHDPLE	10	Unmodified	_NMRYCHDPLE_					0	0	0			REV__nc|ENSG00000101049|Q9HBY8-1|SGK2	REV__nc|ENSG00000101049|Q9HBY8-1|SGK2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	639.273715	1276.53288	0.35341	0.00022593	-0.51766	-0.00033093	-0.16425	-0.000105	639.2732698539382	63.35	0.34563	63.421	63.188	63.534	0.071018	0.024896	0.0001853	NaN	9.3831	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115150	+		14190	12766	9336	9446							-0.09432851633914652
NMTFLPQKFF	10	Unmodified	_NMTFLPQKFF_					0	0	0			REV__ENST00000468005.1_1_7:23455823-23509786:-|nuORF	REV__ENST00000468005.1_1_7:23455823-23509786:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.5718688964844	3	424.886365	1271.63727	0.22826	9.6985E-05	2.9481	0.0012526	3.1763	0.0013496	424.88771091110385	46.276	0.38062	46.276	46.069	46.449	0					16	12	2	0	0	0	0.31783	1	9239	9239		1.9064	0.1641	1	50814	+		14191	12014	9337	9447	19314	19314					0.01231218185102989
NMVQLLLE	8	Unmodified	_NMVQLLLE_					0	0	0		ENST00000357613.8_1_16:75481541-75485728:-|nuORF	ENST00000357613.8_1_16:75481541-75485728:-|nuORF	ENST00000357613.8_1_16:75481541-75485728:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2669372558594	2	480.265153	958.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.509	1	15.509	15.009	16.009	0								0	0	0	0.38822	1	557	557		0.6015	0	1				14192	6133	9338	9448	19315	19315					0.03483595822604002
NMWVSQRTA	9	Unmodified	_NMWVSQRTA_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7659912109375	2	546.766383	1091.51821	-0.26823	-0.00014666	0.11567	6.3244E-05	-0.15256	-8.3415E-05	546.7663740464161	20.922	0.28659	20.922	20.831	21.117	0					49	30	2	0	0	0	0.33978	1	1719	1719		1.4819	0	1	31762			14193	806	9339	9449	19316	19316					-0.023885557197218077
NNEEVMQKV	9	Unmodified	_NNEEVMQKV_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-9|MYZAP	REV__nc|ENSG00000263155|P0CAP1-9|MYZAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7634887695312	2	545.763506	1089.51246	0.0080832	4.4115E-06	-0.088642	-4.8378E-05	-0.080559	-4.3966E-05	545.7634393909444	23.619	0.60218	23.719	23.436	24.038	0.099739					80	57	2	0	0	0	0.33849	1	2282	2282		1.6526	0	1	24876	+		14194	12908	9340	9450	19317	19317					-0.028716990220800653
NNFLLELCIN	10	Unmodified	_NNFLLELCIN_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|287|3|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|287|3|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|287|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2606811523438	2	596.805174	1191.59579	0.18067	0.00010783	-2.1483	-0.0012821	-1.9676	-0.0011743	597.3054605123986	76.301	0.76453	76.34	76.257	77.022	0.03923					44	27	2	0	0	0	0.30541	1	18283	18283		19.257	7.6167	1	630790			14195	7353	9341	9451	19318	19318					0.007660374257739022
NNFRCICR	8	Unmodified	_NNFRCICR_					0	0	0		GPI-EYS|2|fusion;GPI-EYS|1|fusion;ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS	GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2518310546875	2	513.242021	1024.46949	-0.10041	-5.1533E-05	-0.63236	-0.00032455	-0.73277	-0.00037609	513.241640198617	27.495	0.16432	27.582	27.57	27.734	0.0867					20	12	2	0	0	0	0.3576	1	3453	3453		2.3027	0.4585	1	66130			14196	7344	9342	9452	19319	19319					-0.04176747560495642
NNKRHFPL	8	Unmodified	_NNKRHFPL_					0	0	0			REV__nc|ENSG00000011332|Q92782-3|DPF1	REV__nc|ENSG00000011332|Q92782-3|DPF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.742431640625	2	513.2856	1024.55665	0.76044	0.00039033	1.4813	0.00076032	2.2417	0.0011506	513.2862399059478	81.866	0.37608	81.866	81.69	82.066	0					17	12	2	0	0	0	0.35759	1	20003	20003		13.508	0	1	56451	+		14197	7979	9343	9453	19320	19320					0.045351179770932504
NNLFTTLVI	9	Unmodified	_NNLFTTLVI_					0	0	0		ENST00000504117.1_1_5:93752768-93812878:-|nuORF;nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825	ENST00000504117.1_1_5:93752768-93812878:-|nuORF	ENST00000504117.1_1_5:93752768-93812878:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.7614135742188	2	517.797675	1033.5808	0.16823	8.7107E-05	0.31177	0.00016143	0.48	0.00024854	517.7977442917379	59.298	0.28665	59.298	59.194	59.481	0					14	10	2	0	0	0	0.25281	1	13195	13195		6.7232	2.3939	1	80060			14198	5018	9344	9454	19321	19321					0.06534913620089355
NNLMFPHVTVM	11	Unmodified	_NNLMFPHVTVM_					0	0	0			REV__ENSG00000170965|ENST00000359237|PLAC1	REV__ENSG00000170965|ENST00000359237|PLAC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8822326660156	3	434.882626	1301.62605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.99	1	77.99	77.49	78.49	0								0	0	0	0.33466	1	18851	18851		2.6312	0	1		+		14199	10235	9345	9455	19322	19322					-0.012699271806923207
NNNCYQDAL	9	Unmodified	_NNNCYQDAL_					0	0	0		ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4	ENSG00000108576|ENST00000650711|SLC6A4	ENSG00000108576|ENST00000650711|SLC6A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7164306640625	2	527.716556	1053.41856	0.076397	4.0316E-05	0.73085	0.00038568	0.80724	0.000426	527.7167644986655	58.317	0.28592	58.317	58.256	58.542	0					28	10	5	0	0	0	0.32375	1	12839	12839		3.5965	3.5965	1	156890			14200	1597	9346	9456	19323	19323					-0.10601418124360862
NNNLDLDE	8	Unmodified	_NNNLDLDE_					0	0	0		tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1	tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1	tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2375183105469	2	473.709254	945.403954	-0.27467	-0.00013012	-0.075461	-3.5747E-05	-0.35013	-0.00016586	473.70920838664483	23.251	0.45625	23.353	23.213	23.669	0.10178					94	44	3	0	0	0	0.3576	1	2309	2309		0.69038	0	1	113310			14201	13698	9347	9457	19324	19324					-0.07093167000846279
NNNLDLDE	8	Unmodified	_NNNLDLDE_					0	0	0		tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1	tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1	tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	473.709254	945.403954	-0.49854	-0.00023616	0.042558	2.016E-05	-0.45598	-0.000216	473.7092476844013	23.506	0.65707	23.506	23.306	23.963	0	0.076501	5.2064E-05	NaN	0.69038	101	61	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107510			14202	13698	9347	9457							-0.07093167000846279
NNNNYKCC	8	Unmodified	_NNNNYKCC_					0	0	0		ENST00000468398.1_1_3:149047933-149051100:-|nuORF;ENST00000491182.1_1_3:149042665-149051366:-|nuORF;ENSG00000163762|ENST00000296059|TM4SF18	ENST00000468398.1_1_3:149047933-149051100:-|nuORF	ENST00000468398.1_1_3:149047933-149051100:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.68621826171875	2	486.686744	971.358935	-0.30078	-0.00014639	-0.037531	-1.8266E-05	-0.33831	-0.00016465	486.68652477288225	32.816	0.3682	32.816	32.641	33.01	0					22	15	2	0	0	0	0.54097	1	5137	5137		0.69038	0	1	18238			14203	3943	9348	9458	19325	19325					-0.12789012339385408
NNPRKLQKQI	10	Unmodified	_NNPRKLQKQI_					0	0	0		ENST00000550317.1_1_12:111284592-111319020:+|nuORF;nc|ENSG00000173093|Q8NA47-2|CCDC63;ENSG00000173093|ENST00000308208|CCDC63	ENST00000550317.1_1_12:111284592-111319020:+|nuORF	ENST00000550317.1_1_12:111284592-111319020:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8692626953125	2	619.870028	1237.7255	-0.14789	-9.1675E-05	-0.81503	-0.00050521	-0.96292	-0.00059689	619.8693703180221	86.95	0.87386	86.977	86.706	87.58	0.027573					84	37	3	0	0	0	0.45627	2	21553	21553;21598		3.5965	0	1	708160			14204	4526	9349	9459	19326;19327	19326					0.11614974819917734
NNRTAIYSFL	10	Unmodified	_NNRTAIYSFL_					0	0	0		ENST00000260952.8_2_2:190528651-190530784:+|nuORF	ENST00000260952.8_2_2:190528651-190530784:+|nuORF	ENST00000260952.8_2_2:190528651-190530784:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.301513671875	2	599.814387	1197.61422	0.44678	0.00026798	2.1151	0.0012687	2.5619	0.0015366	599.8155998150335	93.611	0.14062	93.649	93.534	93.674	0.037369					9	5	2	0	0	0	0.31731	1	23428	23428		6.2058	0.47393	1	90219			14205	5861	9350	9460	19328	19328					0.023319153920056124
NNSYRLQRFL	10	Unmodified	_NNSYRLQRFL_					0	0	0		SPTAN1|p.D359N|1|0.28|ENSG00000197694|chr9:128577496-128577496|G/A|missense_variant	SPTAN1|p.D359N|1|0.28|ENSG00000197694|chr9:128577496-128577496|G/A|missense_variant	SPTAN1|p.D359N|1|0.28|ENSG00000197694|chr9:128577496-128577496|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.57025146484375	3	437.570316	1309.68912	-0.15941	-6.9753E-05	-0.48086	-0.00021041	-0.64027	-0.00028016	437.57020489090326	43.543	1.1099	43.632	42.954	44.064	0.088924					60	40	2	0	0	0	0.47199	1	8263	8263		0.62683	0	1	66407			14206	13398	9351	9461	19329	19329					0.04666097923200141
NNTIDLKTL	9	Unmodified	_NNTIDLKTL_					0	0	0			REV__ENSG00000170382|ENST00000367177|LRRN2	REV__ENSG00000170382|ENST00000367177|LRRN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7891845703125	2	516.290214	1030.56587	0.30945	0.00015977	-0.67996	-0.00035106	-0.37051	-0.00019129	516.7890135084843	50.754	0.92479	50.824	50.411	51.336	0.069878					102	34	4	0	0	0	0.17428	1	10440	10440		21.537	2.28	1	487150	+		14207	10210	9352	9462	19330	19330					0.05181421752104143
NNYKERLF	8	Unmodified	_NNYKERLF_					0	0	0		ENSG00000102010|ENST00000348343|BMX	ENSG00000102010|ENST00000348343|BMX	ENSG00000102010|ENST00000348343|BMX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.282958984375	2	542.282723	1082.55089	0.34048	0.00018463	0.3863	0.00020948	0.72677	0.00039412	542.2827764649278	46.768	0.58604	46.851	46.683	47.269	0.083092					53	25	3	0	0	0	0.46914	1	9240	9240		16.942	3.0362	1	275080			14208	1288	9353	9463	19331	19331					0.012919746747684258
NPAVTVAMVCT	11	Unmodified	_NPAVTVAMVCT_					0	0	0		nc|ENSG00000171885|P55087-2|AQP4;ENSG00000171885|ENST00000383168|AQP4	nc|ENSG00000171885|P55087-2|AQP4	nc|ENSG00000171885|P55087-2|AQP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.291015625	2	553.272652	1104.53075	0.52376	0.00028978	-0.94334	-0.00052192	-0.41958	-0.00023214	553.2722874704654	71.369	0.1498	71.369	71.297	71.447	0					5	4	2	0	0	0	0.33846	1	16844	16844		13.615	1.0833	1	40338			14209	4470	9354	9464	19332	19332					-0.017332803717181378
NPCIENVVKM	10	Unmodified	_NPCIENVVKM_					0	0	0			REV__CPXM2|p.M334I|1|0.14|ENSG00000121898|chr10:123771016-123771016|C/T|missense_variant	REV__CPXM2|p.M334I|1|0.14|ENSG00000121898|chr10:123771016-123771016|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7855224609375	2	573.785927	1145.5573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.65	1	118.66	118.16	119.16	0.013062								0	0	0	0.33988	1	29887	29887		0.35063	0	1		+		14210	7857	9355	9465	19333	19333					-0.009655914803943233
NPDDLQEANKL	11	Unmodified	_NPDDLQEANKL_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.8095092773438	2	628.809499	1255.60444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.532	1	41.532	41.032	42.032	0								0	0	0	0.31666	1	7754	7754		8.9762	1.8745	1				14211	2292	9356	9466	19334	19334					-0.013133174040376616
NPDDLQEANKL	11	Unmodified	_NPDDLQEANKL_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.8090209960938	2	628.809499	1255.60444	-0.35085	-0.00022062	-0.30065	-0.00018905	-0.65149	-0.00040967	628.8092139769316	41.446	0.27866	41.536	41.365	41.644	0.089767					16	11	2	0	0	0	0.38984	1	7596	7596		6.6304	1.3335	1	47580			14212	2292	9356	9466	19335	19335					-0.013133174040376616
NPDEAEKAL	9	Unmodified	_NPDEAEKAL_					0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7430114746094	2	493.743096	985.47164	-0.022843	-1.1279E-05	-0.12508	-6.1757E-05	-0.14792	-7.3036E-05	493.74299122165473	30.234	0.83093	30.234	29.981	30.812	0					97	42	4	0	0	0	1.126E-12	2	4368	4326;4368		179.28	93.642	1	504440			14213	5523	9357	9467	19336;19337	19337					-0.021677170700399984
NPDEAEKAL	9	Unmodified	_NPDEAEKAL_					0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.74310302734375	2	493.743096	985.47164	-0.016162	-7.9801E-06	-0.021772	-1.075E-05	-0.037935	-1.873E-05	493.7430496998097	30.186	0.72254	30.261	30.031	30.753	0.075403					128	46	4	0	0	0	0.0043231	3	4224	4184;4224;4259		97.741	52.041	1	419620			14214	5523	9357	9467	19338;19339;19340	19339					-0.021677170700399984
NPDEFYYKM	9	Oxidation (M)	_NPDEFYYKM(Oxidation (M))_		NPDEFYYKM(1)		NPDEFYYKM(61)	0	0	1		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.75732421875	2	611.757889	1221.50123	-0.4635	-0.00028355	0.055492	3.3948E-05	-0.408	-0.0002496	611.7577835321949	42.678	0.90439	42.678	42.454	43.358	0					59	30	4	0	0	0	0.016057	1	8120	8120		61.09	48.217	1	205990			14215	4926	9358	9468	19341	19341		285			-0.10066521116232252
NPDEFYYKM	9	Oxidation (M)	_NPDEFYYKM(Oxidation (M))_		NPDEFYYKM(1)		NPDEFYYKM(53)	0	0	1		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.7573852539062	2	611.757889	1221.50123	-0.32504	-0.00019884	0.088264	5.3996E-05	-0.23677	-0.00014485	611.7578752390081	44.828	1.4327	44.828	44.47	45.902	0					103	50	3	0	0	0	0.026931	2	8742	8742;8792		53.317	44.34	1	214920			14216	4926	9358	9468	19342;19343	19342		285			-0.10066521116232252
NPDEFYYKM	9	Oxidation (M)	_NPDEFYYKM(Oxidation (M))_		NPDEFYYKM(1)		NPDEFYYKM(48)	0	0	1		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7577514648438	2	611.757889	1221.50123	-0.2444	-0.00014952	0.15576	9.529E-05	-0.088639	-5.4226E-05	611.7578490126772	42.598	0.51871	42.688	42.52	43.039	0.089764					43	19	3	0	0	0	0.034744	1	7963	7963		47.732	39.822	1	198520			14217	4926	9358	9468	19344	19344		285			-0.10066521116232252
NPDEFYYKM	9	Oxidation (M)	_NPDEFYYKM(Oxidation (M))_		NPDEFYYKM(1)		NPDEFYYKM(53)	0	0	1		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.7575073242188	2	611.757889	1221.50123	-0.018498	-1.1316E-05	0.082005	5.0167E-05	0.063507	3.8851E-05	611.7577361201213	44.755	1.5242	44.843	44.51	46.034	0.08754					103	58	3	0	0	0	0.026931	2	8618	8568;8618		53.317	40.444	1	168210			14218	4926	9358	9468	19345;19346	19346		285			-0.10066521116232252
NPDEFYYKM	9	Unmodified	_NPDEFYYKM_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.6395874023438	2	603.760432	1205.50631	0.39178	0.00023654	-0.62842	-0.00037942	-0.23665	-0.00014288	603.7603958747737	52.978	0.24116	52.978	52.872	53.113	0					14	8	2	0	0	0	0.24683	1	11243	11243		11.495	2.1116	1	83986			14219	4926	9358	9469	19347	19347					-0.08822217253600684
NPDEFYYKM	9	Unmodified	_NPDEFYYKM_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3051147460938	2	603.760432	1205.50631	0.60692	0.00036644	-0.35486	-0.00021425	0.25207	0.00015219	603.7601190200969	52.976	0.3469	53.042	52.802	53.149	0.06543					17	14	2	0	0	0	0.2553	1	11080	11080		5.2969	2.3016	1	67326			14220	4926	9358	9469	19348	19348					-0.08822217253600684
NPDESSKPNM	10	Unmodified	_NPDESSKPNM_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.74267578125	2	559.74277	1117.47099	-0.15675	-8.774E-05	0.31725	0.00017758	0.1605	8.9841E-05	559.7429329698964	23.603	0.41246	23.603	23.45	23.862	0					88	37	3	0	0	0	0.37812	2	2471	2435;2471		14.218	11.223	1	72096			14221	4445	9359	9470	19349;19350	19350					-0.08304879781394447
NPDESSKPNM	10	Unmodified	_NPDESSKPNM_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7428588867188	2	559.74277	1117.47099	0.15319	8.5748E-05	-0.0054341	-3.0417E-06	0.14776	8.2706E-05	559.7427209999419	23.427	0.44887	23.527	23.363	23.812	0.099739					90	41	3	0	0	0	0.336	2	2293	2261;2293		18.721	14.192	1	63315			14222	4445	9359	9470	19351;19352	19352					-0.08304879781394447
NPDEVHAIL	9	Unmodified	_NPDEVHAIL_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2613830566406	2	504.261456	1006.50836	0.48947	0.00024682	-0.65797	-0.00033179	-0.1685	-8.4966E-05	504.2610937515724	47.847	0.42932	47.928	47.726	48.155	0.080032					37	15	3	0	0	0	0.0040275	2	9535	9535;9553		103.35	50.66	1	545810			14223	1259	9360	9471	19353;19354	19353					0.00536579546530902
NPDEVHAIL	9	Unmodified	_NPDEVHAIL_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.261456	1006.50836	0.24031	0.00012118	-0.39494	-0.00019915	-0.15464	-7.7977E-05	504.2612522918978	47.952	0.54407	47.952	47.707	48.251	0	0.012104	0.00011131	NaN	103.35	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	721080			14224	1259	9360	9471							0.00536579546530902
NPDILPTNS	9	Unmodified	_NPDILPTNS_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2740173339844	2	485.745639	969.476725	0.0028657	1.392E-06	-0.023787	-1.1554E-05	-0.020921	-1.0162E-05	485.74562888192145	38.974	0.52747	39.061	38.885	39.412	0.08688					37	20	2	0	0	0	0.24929	1	6955	6955		9.3831	2.0939	1	81338			14225	1307	9361	9472	19355	19355					-0.009234132074311674
NPDINHLLEI	10	Unmodified	_NPDINHLLEI_					0	0	0			REV__ENSG00000113273|ENST00000264914|ARSB	REV__ENSG00000113273|ENST00000264914|ARSB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3115844726562	2	589.31422	1176.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.55	1	105.58	105.08	106.08	0.029739								0	0	0	0.33805	1	27011	27011		2.4985	0	1		+		14226	8738	9362	9473	19356	19356					0.03264495672169687
NPDLAKYPLF	10	Unmodified	_NPDLAKYPLF_					0	0	0		ENST00000452512.6_1_2:200797792-200820219:-|nuORF;ENSG00000162971|ENST00000354611|TYW5;nc|ENSG00000162971|A2RUC4-2|TYW5	ENST00000452512.6_1_2:200797792-200820219:-|nuORF	ENST00000452512.6_1_2:200797792-200820219:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3134155273438	2	589.316232	1176.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.72	1	105.74	105.24	106.24	0.029739								0	0	0	0.3332	1	27056	27056		8.1555	0.54658	1				14227	3867	9363	9474	19357	19357					0.03666585165842662
NPDPAVYQL	9	Unmodified	_NPDPAVYQL_					0	0	0		nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7559509277344	2	508.756007	1015.49746	0.16348	8.3173E-05	-0.1977	-0.00010058	-0.034218	-1.7409E-05	508.75574231379085	59.458	0.87473	59.458	59.17	60.045	0					86	33	4	0	0	0	0.0077293	4	13159	13159;13206;13233;13261		74.2	39.798	1	943300			14228	7627	9364	9475	19358;19359;19360;19361	19358					-0.00966822827751912
NPDPAVYQL	9	Unmodified	_NPDPAVYQL_					0	0	0		nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7559814453125	2	508.756007	1015.49746	0.16065	8.1732E-05	-0.23892	-0.00012155	-0.078274	-3.9822E-05	508.7557280090182	59.366	1.1854	59.438	59.18	60.366	0.072338					95	45	4	0	0	0	0.023873	3	13033	12989;13033;13076		55.503	30.103	1	759070			14229	7627	9364	9475	19362;19363;19364	19363					-0.00966822827751912
NPDPDAETL	9	Unmodified	_NPDPDAETL_					0	0	0		nc|ENSG00000276850|P13928-2|ANXA8;nc|ENSG00000264230|Q5VT79-2|ANXA8L1;ENSG00000265190|ENST00000585281|ANXA8;ENSG00000264230|ENST00000619162|ANXA8L1	nc|ENSG00000276850|P13928-2|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2193298339844	2	486.219454	970.424355	-0.32356	-0.00015732	0.22495	0.00010938	-0.098605	-4.7944E-05	486.2195017674022	43.441	0.65064	43.441	43.179	43.829	0					67	23	4	0	0	0	0.0045417	2	8346	8300;8346		89.401	57.095	1	739140			14230	5724	9365	9476	19365;19366	19366					-0.06203996341025686
NPDPDAETL	9	Unmodified	_NPDPDAETL_					0	0	0		nc|ENSG00000276850|P13928-2|ANXA8;nc|ENSG00000264230|Q5VT79-2|ANXA8L1;ENSG00000265190|ENST00000585281|ANXA8;ENSG00000264230|ENST00000619162|ANXA8L1	nc|ENSG00000276850|P13928-2|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2193908691406	2	486.219454	970.424355	-0.23802	-0.00011573	0.32727	0.00015912	0.089243	4.3392E-05	486.21953773896394	43.331	0.78867	43.42	43.162	43.951	0.089764					57	28	3	0	0	0	0.0045417	2	8189	8142;8189		89.401	57.095	1	694610			14231	5724	9365	9476	19367;19368	19368					-0.06203996341025686
NPDREGWLL	9	Unmodified	_NPDREGWLL_					0	0	0		ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000105443|Q99418|CYTH2;ENST00000462927.5_1_22:37699411-37707619:+|nuORF;ENSG00000100055|ENST00000248901|CYTH4;ENSG00000008256|ENST00000350796|CYTH3;nc|ENSG00000008256|O43739|CYTH3;nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1	ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.280517578125	2	550.28018	1098.54581	0.0040967	2.2543E-06	1.5152	0.00083378	1.5193	0.00083604	550.280721300699	58.618	0.83711	58.618	58.256	59.093	0					72	30	4	0	0	0	0.032232	1	12941	12941		49.527	17.222	1	519700			14232	1470;1603	9366	9477	19369	19369					0.0004767081215959479
NPDREGWLL	9	Unmodified	_NPDREGWLL_					0	0	0		ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000105443|Q99418|CYTH2;ENST00000462927.5_1_22:37699411-37707619:+|nuORF;ENSG00000100055|ENST00000248901|CYTH4;ENSG00000008256|ENST00000350796|CYTH3;nc|ENSG00000008256|O43739|CYTH3;nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1	ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2807006835938	2	550.28018	1098.54581	0.31919	0.00017564	1.469	0.00080836	1.7882	0.000984	550.2807316714956	58.551	0.81433	58.622	58.205	59.02	0.070477					70	28	3	0	0	0	0.12515	1	12819	12819		27.223	1.8239	1	473630			14233	1470;1603	9366	9477	19370	19370					0.0004767081215959479
NPDWGTFEEV	10	Unmodified	_NPDWGTFEEV_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7710571289062	2	597.259111	1192.50367	0.18399	0.00010989	-0.18659	-0.00011144	-0.0025984	-1.5519E-06	597.2589741854488	71.697	0.4183	71.697	71.415	71.834	0					27	14	3	0	0	0	0.25648	1	16931	16931		27.223	3.2027	1	185230			14234	4446	9367	9478	19371	19371					-0.0848834938692562
NPDWGTFEEV	10	Unmodified	_NPDWGTFEEV_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.259033203125	2	597.259111	1192.50367	0.072767	4.3461E-05	-0.17919	-0.00010702	-0.10642	-6.3563E-05	597.2591777370621	71.575	0.3235	71.634	71.492	71.815	0.058578					18	11	2	0	0	0	0.24751	1	16745	16745		28.234	11.121	1	248210			14235	4446	9367	9478	19372	19372					-0.0848834938692562
NPEDFWEII	9	Unmodified	_NPEDFWEII_					0	0	0		nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.775146484375	2	581.774396	1161.53424	0.92714	0.00053939	-1.0979	-0.00063874	-0.17077	-9.9351E-05	581.7741652277791	67.302	1.654	67.367	67.042	68.696	0.065063					133	59	4	0	0	0	0.19398	1	15531	15531		19.257	2.3147	1	2469000			14236	685	9368	9479	19373	19373					-0.04006571001832526
NPEDKSPQL	9	Unmodified	_NPEDKSPQL_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2562866210938	2	514.256371	1026.49819	-0.081258	-4.1787E-05	0.20099	0.00010336	0.11974	6.1575E-05	514.2562600806639	30.168	0.52197	30.168	29.958	30.48	0					53	25	3	0	0	0	0.31086	2	4333	4333;4374		5.2969	2.0156	1	55819			14237	433	9369	9480	19374;19375	19374					-0.014000281787048152
NPEDKSPQL	9	Unmodified	_NPEDKSPQL_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2565307617188	2	514.256371	1026.49819	-0.058241	-2.9951E-05	0.20557	0.00010572	0.14733	7.5767E-05	514.2563103133008	30.172	0.51738	30.247	29.987	30.504	0.075405					73	31	3	0	0	0	0.31086	1	4227	4227		5.2969	2.0156	1	59734			14238	433	9369	9480	19376	19376					-0.014000281787048152
NPEHASVAM	9	Oxidation (M)	_NPEHASVAM(Oxidation (M))_		NPEHASVAM(1)		NPEHASVAM(160)	0	0	1		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.21600341796875	2	486.216192	970.41783	-0.52543	-0.00025547	0.11992	5.8306E-05	-0.40552	-0.00019717	486.2162320289168	20.203	1.1177	20.203	19.984	21.101	0					276	116	4	0	0	0	3.513E-06	3	1549	1515;1549;1585		155.03	111.17	1	557150			14239	1309	9370	9481	19377;19378;19379	19378		80			-0.06856212773391235
NPEHASVAM	9	Oxidation (M)	_NPEHASVAM(Oxidation (M))_		NPEHASVAM(1)		NPEHASVAM(63)	0	0	1		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2161560058594	2	486.216192	970.41783	-0.49542	-0.00024088	0.31334	0.00015235	-0.18208	-8.8528E-05	486.2162795094605	21.581	2.12	21.581	20.992	23.112	0					352	199	2	0	0	0	0.013982	1	1976	1976		62.573	35.689	1	204900			14240	1309	9370	9481	19380	19380		80			-0.06856212773391235
NPEHASVAM	9	Oxidation (M)	_NPEHASVAM(Oxidation (M))_		NPEHASVAM(1)		NPEHASVAM(60)	0	0	1		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2159729003906	2	486.216192	970.41783	-0.10001	-4.8626E-05	-0.11876	-5.7745E-05	-0.21877	-0.00010637	486.2161113183579	20.089	0.99062	20.184	19.98	20.971	0.095232					236	109	4	0	0	0	0.017478	1	1395	1395		60.074	33.19	1	546710			14241	1309	9370	9481	19381	19381		80			-0.06856212773391235
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.21844482421875	2	478.218734	954.422915	-0.40116	-0.00019184	0.073729	3.5259E-05	-0.32744	-0.00015659	478.2186958550197	28.751	1.0329	28.751	28.529	29.562	0					105	56	3	0	0	0	0.10833	2	3951	3951;3986		30.637	11.38	1	344420			14242	1309	9370	9482	19382;19383	19382					-0.05611908910782404
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2185363769531	2	478.218734	954.422915	-0.38774	-0.00018542	0.17601	8.4169E-05	-0.21173	-0.00010126	478.2187344246899	28.661	0.62284	28.739	28.546	29.169	0.078287					92	40	3	0	0	0	0.026209	1	3784	3784		53.833	28.433	1	341600			14243	1309	9370	9482	19384	19384					-0.05611908910782404
NPEHYVQVL	9	Unmodified	_NPEHYVQVL_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;ENST00000419769.6_1_10:127430814-127452038:+|nuORF;ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7828369140625	2	549.782556	1097.55056	0.28995	0.00015941	0.50946	0.00028009	0.7994	0.0004395	549.7830492984688	48.411	0.8084	48.411	48.224	49.032	0					42	27	2	0	0	0	0.20358	1	9836	9836		18.146	18.146	1	229540			14244	1575	9371	9483	19385	19385					0.005685549549070856
NPEHYVQVL	9	Unmodified	_NPEHYVQVL_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;ENST00000419769.6_1_10:127430814-127452038:+|nuORF;ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	549.782556	1097.55056	0.28995	0.00015941	0.50946	0.00028009	0.7994	0.0004395	549.7830492984688	48.411	0.8084	48.411	48.224	49.032	0	-0.00059822	8.1015E-05	NaN	18.146	42	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229540			14245	1575	9371	9483							0.005685549549070856
NPEHYVQVL	9	Unmodified	_NPEHYVQVL_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;ENST00000419769.6_1_10:127430814-127452038:+|nuORF;ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.782556	1097.55056	0.42225	0.00023215	0.3	0.00016494	0.72225	0.00039708	549.7828463624469	48.332	0.5984	48.412	48.185	48.783	0.080032	0.00059822	-0.0001493	NaN	18.146	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191640			14246	1575	9371	9483							0.005685549549070856
NPELGVSCGC	10	Unmodified	_NPELGVSCGC_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7061462402344	2	489.704602	977.394652	0.25902	0.00012684	3.0451	0.0014912	3.3041	0.001618	489.705938811255	87.445	0.36964	87.445	87.263	87.633	0					23	13	2	0	0	0	0.44496	1	21728	21728		5.7319	0.50118	1	91772	+		14247	8249	9372	9484	19386	19386					-0.09494974882375118
NPELGVSCGC	10	Unmodified	_NPELGVSCGC_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	489.704602	977.394652	0.25902	0.00012684	3.0451	0.0014912	3.3041	0.001618	489.705938811255	87.445	0.36964	87.445	87.263	87.633	0	0.02635	5.0127E-05	NaN	5.7319	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91772	+		14248	8249	9372	9484							-0.09494974882375118
NPELGVSCGC	10	Unmodified	_NPELGVSCGC_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	489.704602	977.394652	0.1302	6.3761E-05	2.9679	0.0014534	3.0981	0.0015172	489.706098497066	87.365	0.45377	87.393	87.283	87.736	0.027573	-0.02635	-2.5496E-05	NaN	5.7319	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103640	+		14249	8249	9372	9484							-0.09494974882375118
NPEPHLQHR	9	Unmodified	_NPEPHLQHR_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2904663085938	2	564.288871	1126.56319	0.36892	0.00020818	2.1649	0.0012216	2.5338	0.0014298	564.2898639233401	47.627	0.61485	47.627	47.372	47.986	0					40	20	4	0	0	0	0.32831	1	9637	9637		2.9952	1.3426	1	218820			14250	5588	9373	9485	19387	19387					0.00497011137804293
NPESKVFYL	9	Unmodified	_NPESKVFYL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7871704101562	2	548.787307	1095.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.92	1	54.92	54.42	55.42	0								0	0	0	0.094528	1	11813	11813		34.932	14.518	1				14251	2657	9374	9486	19388	19388					0.016103232404248047
NPESKVFYL	9	Unmodified	_NPESKVFYL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.786865234375	2	548.787307	1095.56006	0.68542	0.00037615	-0.64314	-0.00035295	0.042275	2.32E-05	548.7865694167785	54.892	0.22843	54.957	54.803	55.032	0.065128					17	9	2	0	0	0	0.2125	1	11660	11660		17.113	0.96379	1	144040			14252	2657	9374	9486	19389	19389					0.016103232404248047
NPFHLELAL	9	Unmodified	_NPFHLELAL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2742309570312	2	527.290017	1052.56548	-0.015171	-7.9993E-06	0.26491	0.00013968	0.24974	0.00013168	527.2901659649864	72.696	0.61646	72.696	72.499	73.115	0					44	21	3	0	0	0	0.27929	1	17244	17244		9.3831	1.473	1	269480			14253	3591	9375	9487	19390	19390					0.04130046822865552
NPFHLELAL	9	Unmodified	_NPFHLELAL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2901611328125	2	527.290017	1052.56548	0.30108	0.00015876	0.11658	6.1469E-05	0.41766	0.00022023	527.2900813491788	74.297	0.73695	74.297	74.03	74.767	0					63	27	3	0	0	0	0.013982	2	17749	17699;17749		62.573	26.528	1	671680			14254	3591	9375	9487	19391;19392	19392					0.04130046822865552
NPFHLELAL	9	Unmodified	_NPFHLELAL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2902221679688	2	527.290017	1052.56548	0.37106	0.00019566	0.07654	4.0359E-05	0.4476	0.00023601	527.2900059709154	74.249	0.71684	74.297	74.071	74.788	0.048546					56	25	3	0	0	0	0.03472	2	17569	17520;17569		47.749	19.262	1	657890			14255	3591	9375	9487	19393;19394	19394					0.04130046822865552
NPFKQENVL	9	Unmodified	_NPFKQENVL_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7901000976562	2	544.790381	1087.56621	-0.083542	-4.5513E-05	-0.59298	-0.00032305	-0.67652	-0.00036856	544.7900108264968	45.761	0.42162	45.761	45.647	46.069	0					28	14	2	0	0	0	0.088609	1	9038	9038		34.932	7.3033	1	152330			14256	555	9376	9488	19395	19395					0.025928414719373905
NPFKQENVL	9	Unmodified	_NPFKQENVL_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7904663085938	2	544.790381	1087.56621	0.085456	4.6556E-05	-0.14475	-7.8859E-05	-0.059295	-3.2303E-05	544.7902592004813	45.715	0.43869	45.801	45.638	46.077	0.085621					29	17	2	0	0	0	0.15482	1	8886	8886		23.79	3.3752	1	120460			14257	555	9376	9488	19396	19396					0.025928414719373905
NPFQFEITF	9	Unmodified	_NPFQFEITF_					0	0	0		ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7797241210938	2	571.779482	1141.54441	0.54214	0.00030998	0.81208	0.00046433	1.3542	0.00077431	571.7794295125095	92.534	1.168	92.534	92.243	93.411	0					130	44	5	0	0	0	0.00061878	3	23285	23240;23285;23293		129.77	69.698	1	2313600			14258	1733	9377	9489	19397;19398;19399	19398					-0.02069963276630915
NPFQFEITF	9	Unmodified	_NPFQFEITF_					0	0	0		ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.77978515625	2	571.779482	1141.54441	0.5206	0.00029767	0.92899	0.00053118	1.4496	0.00082884	571.7794647446112	92.497	1.1332	92.534	92.286	93.419	0.03653					127	44	6	0	0	0	3.513E-06	2	23082	23082;23124		155.03	85.921	1	3307700			14259	1733	9377	9489	19400;19401	19400					-0.02069963276630915
NPFTKEAAL	9	Unmodified	_NPFTKEAAL_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7660827636719	2	495.766374	989.518196	-0.055512	-2.7521E-05	-0.35325	-0.00017513	-0.40876	-0.00020265	495.7660707759514	44.842	0.49375	44.842	44.632	45.126	0					41	17	4	0	0	0	0.034936	2	8771	8728;8771		47.594	19.966	1	229650			14260	3880	9378	9490	19402;19403	19403					0.023017675518872238
NPFTKEAAL	9	Unmodified	_NPFTKEAAL_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.766357421875	2	495.766374	989.518196	0.13331	6.6093E-05	-0.32412	-0.00016069	-0.1908	-9.4594E-05	495.7661003767604	44.737	0.4338	44.825	44.627	45.061	0.087543					38	16	3	0	0	0	0.088609	2	8626	8576;8626		34.932	12.196	1	181380			14261	3880	9378	9490	19404;19405	19405					0.023017675518872238
NPFYPEVEL	9	Unmodified	_NPFYPEVEL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.271728515625	2	554.27149	1106.52843	0.41169	0.00022819	0.11999	6.6507E-05	0.53168	0.00029469	554.2713941704684	78.315	0.52606	78.315	78.125	78.651	0					42	17	4	0	0	0	0.13341	2	18940	18940;18989		26.268	9.1552	1	362140			14262	5240	9379	9491	19406;19407	19406					-0.020576695135332557
NPFYPEVEL	9	Unmodified	_NPFYPEVEL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2714233398438	2	554.27149	1106.52843	0.66953	0.0003711	-0.72686	-0.00040288	-0.057324	-3.1773E-05	554.2709517414422	78.305	0.53949	78.335	78.112	78.651	0.030159					40	18	3	0	0	0	0.13341	2	18776	18776;18831		26.268	9.1552	1	405620			14263	5240	9379	9491	19408;19409	19408					-0.020576695135332557
NPHTSTMALVF	11	Unmodified	_NPHTSTMALVF_					0	0	0		ENSG00000184408|ENST00000331113|KCND2	ENSG00000184408|ENST00000331113|KCND2	ENSG00000184408|ENST00000331113|KCND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3028564453125	2	609.302798	1216.59104	0.32479	0.0001979	0.13428	8.1815E-05	0.45907	0.00027971	609.3026611531483	72.952	1.1877	73.004	72.535	73.723	0.052567					85	43	3	0	0	0	0.38315	1	17215	17215		8.1555	1.4324	1	353160			14264	4975	9380	9492	19410	19410					-0.008588467169829528
NPIGFVEKL	9	Unmodified	_NPIGFVEKL_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7922058105469	2	508.792392	1015.57023	0.33726	0.0001716	-0.22247	-0.00011319	0.11479	5.8407E-05	508.79218732025623	61.107	0.61298	61.107	60.834	61.447	0					54	21	3	0	0	0	0.00069152	2	13663	13663;13764		128.57	78.64	1	399890			14265	519	9381	9493	19411;19412	19411					0.06306930965661195
NPIGFVEKL	9	Unmodified	_NPIGFVEKL_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7922058105469	2	508.792392	1015.57023	0.22591	0.00011494	-0.074233	-3.7769E-05	0.15168	7.7173E-05	508.7922990943396	60.988	0.65867	61.061	60.794	61.453	0.073421					46	22	3	0	0	0	0.0011298	3	13503	13503;13555;13603		121.35	62.667	1	315420			14266	519	9381	9493	19413;19414;19415	19413					0.06306930965661195
NPISTVTEL	9	Unmodified	_NPISTVTEL_					0	0	0		nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4	nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2637939453125	2	487.263665	972.512776	0.2784	0.00013565	0.072548	3.535E-05	0.35095	0.000171	487.26356582706586	62.927	0.92719	62.927	62.722	63.649	0					72	34	3	0	0	0	0.0045417	2	14279	14228;14279		89.401	37.132	1	928510			14267	1907	9382	9494	19416;19417	19417					0.025420439694244124
NPISTVTEL	9	Unmodified	_NPISTVTEL_					0	0	0		nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4	nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2637634277344	2	487.263665	972.512776	0.21491	0.00010472	0.21241	0.0001035	0.42732	0.00020822	487.2636463518403	62.831	0.73061	62.904	62.659	63.39	0.072697					59	30	3	0	0	0	0.013982	2	14070	14070;14119		62.573	18.714	1	683450			14268	1907	9382	9494	19418;19419	19418					0.025420439694244124
NPKTDSLGLL	10	Unmodified	_NPKTDSLGLL_					0	0	0			REV__nc|ENSG00000291239|Q3ZCX4-3|ZNF568	REV__nc|ENSG00000291239|Q3ZCX4-3|ZNF568	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2982177734375	2	529.298039	1056.58152	0.23724	0.00012557	0.0302	1.5985E-05	0.26744	0.00014156	529.2980148725633	46.651	1.2998	46.734	46.546	47.846	0.083096					152	61	4	0	0	0	0.30966	1	9380	9380		21.537	1.0834	1	4970100	+		14269	12923	9383	9495	19420	19420					0.055497082691545074
NPKTWGRL	8	Unmodified	_NPKTWGRL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.9408874511719	2	486.274701	970.534849	-0.0041211	-2.004E-06	-1.5174	-0.00073787	-1.5215	-0.00073987	486.2739260758202	46.626	0.72648	46.709	46.57	47.297	0.083092					52	36	2	0	0	0	0.35759	1	9304	9304		12.532	3.1841	1	423430			14270	3533	9384	9496	19421	19421					0.04840313228521609
NPLHLDYVM	9	Oxidation (M)	_NPLHLDYVM(Oxidation (M))_		NPLHLDYVM(1)		NPLHLDYVM(56)	0	0	1		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2706298828125	2	559.270967	1116.52738	0.58392	0.00032657	-0.42156	-0.00023577	0.16236	9.0801E-05	559.2707099792377	55.354	1.0572	55.354	55.059	56.116	0					87	37	3	0	0	0	0.02293	2	11912	11912;11962		56.177	23.872	1	260610			14271	2506	9385	9497	19422;19423	19422		160			-0.026222071540814795
NPLHLDYVM	9	Oxidation (M)	_NPLHLDYVM(Oxidation (M))_		NPLHLDYVM(1)		NPLHLDYVM(50)	0	0	1		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.271240234375	2	559.270967	1116.52738	0.61613	0.00034458	-1.0465	-0.00058529	-0.43039	-0.00024071	559.2705950244151	55.245	1.1936	55.31	54.846	56.039	0.065128					85	45	3	0	0	0	0.031665	1	11810	11810		49.933	17.628	1	211390			14272	2506	9385	9497	19424	19424		160			-0.026222071540814795
NPLQDEWVL	9	Unmodified	_NPLQDEWVL_					0	0	0		ENST00000554944.5_1_9:34646701-34647660:+|nuORF;ENST00000485531.1_1_9:34646906-34647264:+|nuORF;ENST00000557706.5_1_9:34647054-34647264:+|nuORF;ENST00000556157.1_1_9:34647054-34647489:+|nuORF;ENST00000487381.5_1_9:34646701-34647264:+|nuORF;ENST00000557541.5_1_9:34646906-34647860:+|nuORF;ENST00000556494.5_1_9:34646906-34647602:+|nuORF;ENST00000555214.5_1_9:34646701-34648116:+|nuORF;ENST00000473529.5_1_9:34646701-34647602:+|nuORF;ENST00000554139.5_1_9:34646701-34647703:+|nuORF;ENST00000489643.6_1_9:34646701-34648507:+|nuORF;ENSG00000213930|ENST00000378842|GALT	ENST00000554944.5_1_9:34646701-34647660:+|nuORF	ENST00000554944.5_1_9:34646701-34647660:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2684326171875	2	557.282389	1112.55022	0.85623	0.00047716	-0.95441	-0.00053188	-0.098174	-5.4711E-05	557.2819560655086	80.807	0.5179	80.831	80.592	81.11	0.023605					27	17	2	0	0	0	0.27929	2	19532	19532;19545		9.3831	0.63772	1	124720			14273	7119	9386	9498	19425;19426	19425					-0.001548647649542545
NPLRSEPAL	9	Unmodified	_NPLRSEPAL_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7769470214844	2	498.777274	995.539994	-0.29234	-0.00014581	0.3771	0.00018809	0.084766	4.2279E-05	498.7772735086769	40.807	0.66454	40.807	40.593	41.258	0					53	23	3	0	0	0	0.27929	1	7590	7590		9.3831	0.63772	1	160610			14274	5170	9387	9499	19427	19427					0.04204572300466225
NPLRSEPAL	9	Unmodified	_NPLRSEPAL_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.77734375	2	498.777274	995.539994	-0.14949	-7.4561E-05	0.23503	0.00011723	0.085546	4.2668E-05	498.7772780965362	40.712	0.55878	40.802	40.569	41.128	0.089642					51	21	3	0	0	0	0.14444	1	7416	7416		24.991	7.8781	1	122910			14275	5170	9387	9499	19428	19428					0.04204572300466225
NPLVDFVEL	9	Unmodified	_NPLVDFVEL_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2818603515625	2	523.281857	1044.54916	0.16934	8.8611E-05	0.21809	0.00011412	0.38742	0.00020273	523.2818986897959	89.422	0.48004	89.422	89.194	89.674	0					40	17	3	0	0	0	0.18759	1	22298	22298		27.629	5.8822	1	339410			14276	598	9388	9500	19429	19429					0.028669208661540324
NPLVDFVEL	9	Unmodified	_NPLVDFVEL_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2820434570312	2	523.281857	1044.54916	0.13016	6.8111E-05	0.25692	0.00013444	0.38709	0.00020255	523.2819367069752	89.34	0.47869	89.372	89.17	89.648	0.032265					41	17	3	0	0	0	0.21622	1	22171	22171		21.537	4.4241	1	303450			14277	598	9388	9500	19430	19430					0.028669208661540324
NPLWPDTTL	9	Unmodified	_NPLWPDTTL_					0	0	0		ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5;ENSG00000154265|ENST00000392676|ABCA5	ENST00000586995.5_3_17:67249715-67270153:-|nuORF	ENST00000586995.5_3_17:67249715-67270153:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7715454101562	2	528.771657	1055.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.796	1	77.83	77.33	78.33	0.034485								0	0	0	0.25287	1	18633	18633		8.7454	2.5396	1				14278	3551	9389	9501	19431	19431					0.00321750206330762
NPMTKEPKL	9	Unmodified	_NPMTKEPKL_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000465836.1_1_2:128944884-128947313:+|nuORF	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2885131835938	2	529.289159	1056.56377	-0.1212	-6.415E-05	-0.45871	-0.00024279	-0.57991	-0.00030694	529.2887872477984	30.233	0.32683	30.233	30.077	30.404	0					28	15	3	0	0	0	0.32614	1	4350	4350		3.2813	0.97858	1	23314			14279	2804	9390	9502	19432	19432					0.037746697426428
NPMTKEPKL	9	Unmodified	_NPMTKEPKL_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000465836.1_1_2:128944884-128947313:+|nuORF	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2890625	2	529.289159	1056.56377	-0.073016	-3.8646E-05	-0.70031	-0.00037067	-0.77333	-0.00040931	529.2888073784437	30.186	0.31289	30.262	30.113	30.426	0.075403					30	19	2	0	0	0	0.33849	1	4205	4205		1.6526	0.96225	1	30201			14280	2804	9390	9502	19433	19433					0.037746697426428
NPMTKEPKL	9	Unmodified	_NPMTKEPKL_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000465836.1_1_2:128944884-128947313:+|nuORF	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	529.289159	1056.56377	-0.1212	-6.415E-05	-0.45871	-0.00024279	-0.57991	-0.00030694	529.2887872477984	30.233	0.32683	30.233	30.077	30.404	0	-0.014499	0.00017111	NaN	3.2813	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23314			14281	2804	9390	9502							0.037746697426428
NPNEQGGII	9	Unmodified	_NPNEQGGII_					0	0	0			REV__nc|ENSG00000165821|Q9Y467-3|SALL2	REV__nc|ENSG00000165821|Q9Y467-3|SALL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.2376403808594	2	471.237981	940.461409	-0.31432	-0.00014812	0.06052	2.8519E-05	-0.2538	-0.0001196	471.23794400931286	29.822	0.72575	29.822	29.636	30.362	0					75	35	3	0	0	0	0.3354	1	4212	4212		2.0598	0	1	165680	+		14282	10048	9391	9503	19434	19434					-0.011202800046021366
NPNLSGHLLS	10	Unmodified	_NPNLSGHLLS_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2816772460938	2	526.28018	1050.54581	0.66193	0.00034836	2.8513	0.0015006	3.5132	0.0018489	526.2816718534186	65.772	0.1785	65.772	65.675	65.853	0					7	5	2	0	0	0	0.31761	1	15094	15094		5.2969	1.3525	1	63384			14283	3833	9392	9504	19435	19435					0.022556708121555857
NPPRFVRIH	9	Unmodified	_NPPRFVRIH_					0	0	0			REV__nc|ENSG00000104723|Q13454-2|TUSC3	REV__nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.3169555664062	2	568.327799	1134.64105	-0.17753	-0.00010089	-1.096	-0.00062287	-1.2735	-0.00072377	568.3270991080022	30.083	0.49562	30.083	29.866	30.362	0					47	22	3	0	0	0	0.3354	1	4319	4319		2.0598	0.21551	1	48487	+		14284	8510	9393	9505	19436	19436					0.07911068793850973
NPPRFVRIH	9	Unmodified	_NPPRFVRIH_					0	0	0			REV__nc|ENSG00000104723|Q13454-2|TUSC3	REV__nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.3167724609375	2	568.327799	1134.64105	-0.13025	-7.4023E-05	-0.97667	-0.00055507	-1.1069	-0.00062909	568.3270906231315	29.973	0.50382	30.048	29.882	30.386	0.075403					74	31	3	0	0	0	0.3354	1	4153	4153		2.0598	0.21551	1	61428	+		14285	8510	9393	9505	19437	19437					0.07911068793850973
NPQGQVDSL	9	Unmodified	_NPQGQVDSL_					0	0	0		nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;ENSG00000160505|ENST00000301295|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.24871826171875	2	479.235439	956.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.908	1	52.908	52.408	53.408	0								0	0	0	0.23884	1	11197	11197		11.64	3.047	1				14286	3762	9394	9506	19438	19438					-0.023645838672450736
NPQINRDH	8	Unmodified	_NPQINRDH_					0	0	0			REV__ENST00000370629.6_1_X:135730352-135730547:+|nuORF	REV__ENST00000370629.6_1_X:135730352-135730547:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2447204589844	2	497.246672	992.478791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.069	1	29.069	28.569	29.569	0								0	0	0	0.38822	1	4023	4023		2.3027	1.5091	1		+		14287	11592	9395	9507	19439	19439					-0.01774939678955434
NPQNPGSWEG	10	Unmodified	_NPQNPGSWEG_					0	0	0			REV__TNRC6B|p.K932*|1|0.17|ENSG00000100354|chr22:40267022-40267023|-/T|frameshift_variant	REV__TNRC6B|p.K932*|1|0.17|ENSG00000100354|chr22:40267022-40267023|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2359619140625	2	543.23597	1084.45739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.96	1	32.034	31.534	32.534	0.07378								0	0	0	0.33892	1	4757	4757		1.4819	0.15237	1		+		14288	8389	9396	9508	19440	19440					-0.08146369498354034
NPQSLIQPAF	10	Unmodified	_NPQSLIQPAF_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.798583984375	2	557.798206	1113.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.31	1	105.34	104.84	105.84	0.034004								0	0	0	0.33528	1	26947	26947		5.7319	0	1		+		14289	8829	9397	9509	19441	19441					0.029611279890104925
NPRKITND	8	Unmodified	_NPRKITND_					0	0	0			REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.25811767578125	2	479.259248	956.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.06	1	118.06	117.56	118.56	0								0	0	0	0.38822	1	29890	29890		0.6015	0	1		+		14290	8609	9398	9510	19442	19442					0.023951151236133228
NPRVPWRW	8	Unmodified	_NPRVPWRW_					0	0	0		ENST00000595335.5_1_19:57874916-57879933:+|nuORF	ENST00000595335.5_1_19:57874916-57879933:+|nuORF	ENST00000595335.5_1_19:57874916-57879933:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.232666015625	2	555.801417	1109.58828	0.053035	2.9477E-05	1.7271	0.00095992	1.7801	0.0009894	555.8023384511185	32.255	0.36317	32.255	32.107	32.47	0					21	13	2	0	0	0	0.3576	1	4940	4940		0.69038	0.16561	1	34974			14291	7282	9399	9511	19443	19443					0.03787110731013854
NPSEFFVDVM	10	Oxidation (M)	_NPSEFFVDVM(Oxidation (M))_		NPSEFFVDVM(1)		NPSEFFVDVM(57)	0	0	1		ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENSG00000004975|ENST00000005340|DVL2	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.7664794921875	2	600.765714	1199.51688	0.49434	0.00029698	0.39507	0.00023734	0.88941	0.00053433	600.7658077163579	75.478	0.70465	75.478	75.058	75.763	0					42	27	2	0	0	0	0.051426	1	18097	18097		57.249	40.136	1	411560			14292	343	9400	9512	19444	19444		15			-0.07490234599185897
NPSEFFVDVM	10	Oxidation (M)	_NPSEFFVDVM(Oxidation (M))_					0	0	1		ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENSG00000004975|ENST00000005340|DVL2	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	600.765714	1199.51688	0.43189	0.00025946	0.7454	0.00044781	1.1773	0.00070727	600.766088401482	75.366	0.68507	75.41	74.995	75.68	0.044037	-0.034117	0.00022779	NaN	57.249	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365960			14293	343	9400	9512				15			-0.07490234599185897
NPSEQEPKF	9	Unmodified	_NPSEQEPKF_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2557373046875	2	538.256371	1074.49819	0.050748	2.7315E-05	-0.061433	-3.3067E-05	-0.010685	-5.7513E-06	538.2562890781475	34.034	0.37143	34.034	33.883	34.254	0					31	13	3	0	0	0	0.095436	1	5501	5501		33.445	19.539	1	59455			14294	2762	9401	9513	19445	19445					-0.03608028178700806
NPSFVPVWY	9	Unmodified	_NPSFVPVWY_					0	0	0			REV__ENST00000228928.11_1_12:113408693-113408756:+|nuORF	REV__ENST00000228928.11_1_12:113408693-113408756:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.79638671875	2	554.776742	1107.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.651	1	20.751	20.251	21.251	0.099499								0	0	0	0.29233	1	1560	1560		0.6015	0	1		+		14295	11190	9402	9514	19446	19446					-0.010536420684275072
NPSGESQPL	9	Unmodified	_NPSGESQPL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;ENST00000490833.5_1_2:216246727-216248186:-|nuORF;ENST00000492816.6_1_2:216246929-216248186:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.7217712402344	2	464.722164	927.429775	-0.21669	-0.0001007	-0.21449	-9.9677E-05	-0.43118	-0.00020038	464.721970303626	33.09	0.54196	33.165	32.937	33.479	0.074322					50	21	3	0	0	0	0.27929	1	5087	5087		9.3831	0.035688	1	77510			14296	1902	9403	9515	19447	19447					-0.0368427275857357
NPSGESQPL	9	Unmodified	_NPSGESQPL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;ENST00000490833.5_1_2:216246727-216248186:-|nuORF;ENST00000492816.6_1_2:216246929-216248186:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	464.722164	927.429775	-0.048106	-2.2356E-05	-0.28701	-0.00013338	-0.33512	-0.00015574	464.72188531502223	33.162	0.53485	33.162	32.93	33.464	0	-0.0015213	-3.8641E-05	NaN	9.3831	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111830			14297	1902	9403	9515							-0.0368427275857357
NPSRTPAVI	9	Unmodified	_NPSRTPAVI_					0	0	0		CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7711486816406	2	477.771991	953.529429	-0.73304	-0.00035023	-1.241	-0.00059292	-1.974	-0.00094314	477.77152103205714	41.245	0.4738	41.245	41.046	41.52	0					33	16	4	0	0	0	0.24533	1	7678	7678		12.241	1.4167	1	112240			14298	201	9404	9516	19448	19448					0.05080589646047429
NPSRTPAVI	9	Unmodified	_NPSRTPAVI_					0	0	0		CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7719421386719	2	477.771991	953.529429	-0.58095	-0.00027756	-0.52324	-0.00024999	-1.1042	-0.00052755	477.7716172470581	41.183	0.38383	41.273	41.067	41.451	0.089645					23	13	2	0	0	0	0.2546	1	7506	7506		12.241	1.4167	1	89993			14299	201	9404	9516	19449	19449					0.05080589646047429
NPSVREFVL	9	Unmodified	_NPSVREFVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7935791015625	2	530.792924	1059.57129	0.23346	0.00012392	0.044544	2.3643E-05	0.278	0.00014756	530.7933176807325	56.525	2.0268	56.525	56.19	58.217	0					248	73	4	0	0	0	3.2925E-10	7	12339	12296;12339;12402;12445;12563;12742;12798		176.43	122.52	1	47906000			14300	2519	9405	9517	19450;19451;19452;19453;19454;19455;19456	19451					0.04389145334562272
NPSVREFVL	9	Unmodified	_NPSVREFVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.792724609375	2	530.792924	1059.57129	-0.0096946	-5.1458E-06	0.6114	0.00032452	0.6017	0.00031938	530.7931089614377	58.5	0.67421	58.5	58.256	58.931	0					48	24	3	0	0	0	0.17305	1	12841	12841		31.268	7.2478	1	180720			14301	2519	9405	9517	19457	19457					0.04389145334562272
NPSVREFVL	9	Unmodified	_NPSVREFVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7933959960938	2	530.792924	1059.57129	0.31892	0.00016928	-0.034984	-1.8569E-05	0.28393	0.00015071	530.7932727763408	56.465	2.8081	56.531	56.183	58.991	0.066452					252	104	4	0	0	0	4.6221E-09	7	12142	12142;12192;12250;12292;12409;12794;12856		168.54	113.76	1	35894000			14302	2519	9405	9517	19458;19459;19460;19461;19462;19463;19464	19458					0.04389145334562272
NPTDMKNVAVF	11	Unmodified	_NPTDMKNVAVF_					0	0	0		ENST00000609841.1_1_10:42831530-42831992:-|nuORF	ENST00000609841.1_1_10:42831530-42831992:-|nuORF	ENST00000609841.1_1_10:42831530-42831992:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3211059570312	2	618.308081	1234.60161	-0.49533	-0.00030627	0.67954	0.00042017	0.18421	0.0001139	618.3085821986233	72.215	0.67538	72.215	72.071	72.747	0					42	22	3	0	0	0	0.30574	1	17101	17101		18.373	7.5736	1	496420			14303	7327	9406	9518	19465	19465					-0.006308640625775297
NPTDMKNVAVF	11	Unmodified	_NPTDMKNVAVF_					0	0	0		ENST00000609841.1_1_10:42831530-42831992:-|nuORF	ENST00000609841.1_1_10:42831530-42831992:-|nuORF	ENST00000609841.1_1_10:42831530-42831992:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.321044921875	2	618.308081	1234.60161	-0.24512	-0.00015156	0.714	0.00044147	0.46888	0.00028991	618.3085947267492	72.152	0.50789	72.208	72.03	72.538	0.055931					42	17	3	0	0	0	0.30965	1	16899	16899		12.241	0	1	367960			14304	7327	9406	9518	19466	19466					-0.006308640625775297
NPTEIDKVL	9	Unmodified	_NPTEIDKVL_					0	0	0		nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7843017578125	2	514.784764	1027.55498	0.24183	0.00012449	-0.59105	-0.00030426	-0.34921	-0.00017977	514.7841715354715	49.271	0.47548	49.271	49.059	49.534	0					29	16	3	0	0	0	0.085487	1	10078	10078		35.612	16.25	1	119660			14305	2480	9407	9519	19467	19467					0.04230019377814642
NPTEIDKVL	9	Unmodified	_NPTEIDKVL_					0	0	0		nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7835083007812	2	514.784764	1027.55498	0.15625	8.0434E-05	-0.025667	-1.3213E-05	0.13058	6.7221E-05	514.7845518067525	49.2	0.35225	49.276	49.076	49.428	0.076603					22	12	2	0	0	0	0.13341	1	9934	9934		26.268	6.8291	1	87609			14306	2480	9407	9519	19468	19468					0.04230019377814642
NPTEPDHAI	9	Unmodified	_NPTEPDHAI_					0	0	0		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.23529052734375	2	497.235439	992.456324	-0.027465	-1.3657E-05	-0.081677	-4.0613E-05	-0.10914	-5.427E-05	497.2352836903408	30.367	0.60974	30.367	30.169	30.779	0					75	32	4	0	0	0	0.0084662	2	4421	4378;4421		71.922	44.293	1	253670			14307	3691	9408	9520	19469;19470	19470					-0.04020583867247751
NPTEPDHAI	9	Unmodified	_NPTEPDHAI_					0	0	0		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7369384765625	2	497.235439	992.456324	-0.010234	-5.0887E-06	-0.047977	-2.3856E-05	-0.058211	-2.8944E-05	497.2352671318447	30.335	0.61871	30.41	30.211	30.83	0.075403					101	39	4	0	0	0	0.047633	2	4296	4248;4296		43.858	23.405	1	192810			14308	3691	9408	9520	19471;19472	19472					-0.04020583867247751
NPTFEWYW	8	Unmodified	_NPTFEWYW_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7508544921875	2	571.750724	1141.4869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.989	1	21.989	21.489	22.489	0								0	0	0	0.38822	1	2004	2004		0.79363	0	1				14309	3989	9409	9521	19473	19473					-0.07818805482202151
NPTLNYILL	9	Unmodified	_NPTLNYILL_					0	0	0			REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense	REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.792724609375	2	530.8055	1059.59645	0.048238	2.5605E-05	0.38119	0.00020234	0.42943	0.00022794	530.8056375038761	58.413	0.31541	58.413	58.256	58.572	0					16	11	2	0	0	0	0.18364	1	12841	12841		20.454	5.6154	1	76470	+		14310	13010	9410	9522	19474	19474					0.0690320013713972
NPTLNYILL	9	Unmodified	_NPTLNYILL_					0	0	0			REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense	REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	530.8055	1059.59645	0.29361	0.00015585	-0.18907	-0.00010036	0.10455	5.5495E-05	530.8054243201414	58.232	0.40918	58.302	58.184	58.593	0.070477	-0.055565	-0.00037398	NaN	20.454	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97509	+		14311	13010	9410	9522							0.0690320013713972
NPVSQVEIL	9	Unmodified	_NPVSQVEIL_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;ITGB6-RBMS1|1|fusion;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|4|fusion	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7796325683594	2	499.779482	997.544411	0.69963	0.00034966	-0.26564	-0.00013276	0.43399	0.0002169	499.77926346067494	65.555	0.53467	65.555	65.344	65.879	0					48	19	3	0	0	0	0.1646	2	15037	15037;15089		22.658	18.373	1	478700			14312	1886	9411	9523	19475;19476	19475					0.04554036723379795
NPVSQVEIL	9	Unmodified	_NPVSQVEIL_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;ITGB6-RBMS1|1|fusion;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|4|fusion	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7794494628906	2	499.779482	997.544411	0.5226	0.00026118	-0.17792	-8.8922E-05	0.34467	0.00017226	499.77934823353667	65.525	0.74641	65.592	65.365	66.112	0.066872					57	28	3	0	0	0	0.14444	1	14913	14913		24.991	8.8419	1	540540			14313	1886	9411	9523	19477	19477					0.04554036723379795
NPWFQRAK	8	Unmodified	_NPWFQRAK_					0	0	0		nc|ENSG00000185436|Q8IU57-2|IFNLR1;ENSG00000185436|ENST00000327535|IFNLR1	nc|ENSG00000185436|Q8IU57-2|IFNLR1	nc|ENSG00000185436|Q8IU57-2|IFNLR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7791137695312	2	523.780151	1045.54575	-0.2059	-0.00010785	-1.7333	-0.00090787	-1.9392	-0.0010157	523.778907583346	28.709	0.27397	28.787	28.647	28.921	0.078287					27	16	2	0	0	0	0.54097	1	3807	3807		0.69038	0.088878	1	30360			14314	7575	9412	9524	19478	19478					0.024797156027943856
NPWPQGYVIE	10	Unmodified	_NPWPQGYVIE_					0	0	0		ENST00000487540.6_1_1:36933583-36937977:-|nuORF;ENST00000464365.2_1_1:36934562-36941005:-|nuORF;nc|ENSG00000119535|Q99062-2|CSF3R;nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;ENST00000480825.6_1_1:36934562-36937301:-|nuORF	ENST00000487540.6_1_1:36933583-36937977:-|nuORF	ENST00000487540.6_1_1:36933583-36937977:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.779296875	2	601.795663	1201.57677	0.31126	0.00018732	0.61803	0.00037193	0.9293	0.00055925	601.7952083351838	49.387	0.31091	49.387	49.223	49.534	0					18	10	3	0	0	0	0.41688	1	10094	10094		10.074	0	1	64116			14315	2073	9413	9525	19479	19479					-0.015951758736491684
NPWRYLWL	8	Unmodified	_NPWRYLWL_					0	0	0			REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3055419921875	2	574.306001	1146.59745	0.48955	0.00028115	-0.66874	-0.00038406	-0.17919	-0.00010291	574.3054793575932	97.194	0.473	97.194	96.965	97.438	0					41	22	2	0	0	0	0.52924	1	24736	24736		8.5933	1.304	1	170300	+		14316	11220	9414	9526	19480	19480					0.030014592967063436
NPYFEFVL	8	Unmodified	_NPYFEFVL_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7581176757812	2	514.758018	1027.50148	0.41204	0.0002121	0.22842	0.00011758	0.64047	0.00032969	514.7580286018034	91.073	0.67288	91.073	90.834	91.507	0					52	23	3	0	0	0	0.43379	1	22828	22828		21.747	2.4897	1	779300			14317	744	9415	9527	19481	19481					-0.011167333340381447
NPYFEFVL	8	Unmodified	_NPYFEFVL_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7582397460938	2	514.758018	1027.50148	0.158	8.1332E-05	0.46576	0.00023975	0.62376	0.00032109	514.7581401180581	90.996	0.7009	91.032	90.797	91.498	0.035446					62	24	4	0	0	0	0.4772	1	22645	22645		15.847	1.9411	1	849510			14318	744	9415	9527	19482	19482					-0.011167333340381447
NPYQFNFTSF	10	Unmodified	_NPYQFNFTSF_					0	0	0			REV__ENSG00000116711|ENST00000367466|PLA2G4A	REV__ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.19415283203125	3	422.192623	1263.55604	0.64106	0.00027065	2.617	0.0011049	3.258	0.0013755	422.19380558337485	71.019	0.4012	71.019	70.708	71.109	0					21	13	2	0	0	0	0.42335	1	16686	16686		5.4027	1.5568	1	206920	+		14319	8814	9416	9528	19483	19483					-0.06519766253268244
NPYSQLLII	9	Unmodified	_NPYSQLLII_					0	0	0		ENST00000392379.5_1_3:197238637-197238769:-|nuORF	ENST00000392379.5_1_3:197238637-197238769:-|nuORF	ENST00000392379.5_1_3:197238637-197238769:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.79296875	2	530.8055	1059.59645	0.048238	2.5605E-05	0.38119	0.00020234	0.42943	0.00022794	530.8056375038761	58.413	0.31541	58.413	58.256	58.572	0					16	11	2	0	0	0	0.29576	1	12893	12893		7.2892	0	1	76470			14320	6314	9417	9529	19484	19484					0.06903200137162457
NPYSRETEF	9	Unmodified	_NPYSRETEF_					0	0	0		ENST00000547994.5_1_12:56718022-56726878:-|nuORF;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7589721679688	2	571.759278	1141.504	0.29295	0.0001675	-0.73736	-0.00042159	-0.44441	-0.0002541	571.7590635928747	38.033	0.4564	38.033	37.783	38.239	0					24	15	2	0	0	0	0.2125	1	6706	6706		17.113	3.605	1	57029			14321	2733	9418	9530	19485	19485					-0.06108929667038865
NPYSRETEF	9	Unmodified	_NPYSRETEF_					0	0	0		ENST00000547994.5_1_12:56718022-56726878:-|nuORF;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7595825195312	2	571.759278	1141.504	0.31155	0.00017813	-0.066243	-3.7875E-05	0.24531	0.00014026	571.7593263984689	37.927	0.40777	38.011	37.772	38.18	0.084476					21	14	2	0	0	0	0.32831	1	6545	6545		2.9952	0.26005	1	40535			14322	2733	9418	9530	19486	19486					-0.06108929667038865
NQADHPVLA	9	Unmodified	_NQADHPVLA_					0	0	0		ENST00000497283.1_1_3:50649969-50651260:+|nuORF	ENST00000497283.1_1_3:50649969-50651260:+|nuORF	ENST00000497283.1_1_3:50649969-50651260:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2561340332031	2	482.745973	963.477394	-0.094274	-4.551E-05	-0.16587	-8.0072E-05	-0.26014	-0.00012558	482.74614166322533	36.176	0.92181	36.176	35.854	36.776	0					112	35	5	0	0	0	0.31496	1	6078	6078		4.756	2.4533	1	224680			14323	6843	9419	9531	19487	19487					-0.005805737677178513
NQEAEPLEGNV	11	Unmodified	_NQEAEPLEGNV_					0	0	0			REV__ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	REV__ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8088989257812	2	600.280574	1198.5466	0.51465	0.00030893	1.9537	0.0011728	2.4684	0.0014817	600.2814931775533	63.211	0.2602	63.211	63.057	63.317	0					14	10	2	0	0	0	0.25034	1	14295	14295		36.506	7.4246	1	109000	+		14324	8113	9420	9532	19488	19488					-0.0447357932948762
NQIELIQFEL	10	Unmodified	_NQIELIQFEL_					0	0	0			REV__ENSG00000188312|ENST00000375587|CENPP	REV__ENSG00000188312|ENST00000375587|CENPP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5777587890625	3	416.227444	1245.6605	0.49436	0.00020577	0.26918	0.00011204	0.76355	0.00031781	416.22770425061464	46.967	0.65598	46.967	46.744	47.4	0					36	23	2	0	0	0	0.3181	1	9446	9446		3.5871	1.0886	1	100670	+		14325	10764	9421	9533	19489	19489					0.04749935503446068
NQIVVLLVE	9	Unmodified	_NQIVVLLVE_					0	0	0		ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2872314453125	2	513.813325	1025.6121	0.20951	0.00010765	-0.21866	-0.00011235	-0.0091462	-4.6994E-06	513.8130927785803	51.081	0.52617	51.081	50.922	51.448	0					38	17	3	0	0	0	0.25281	1	10713	10713		6.7232	3.1267	1	309580			14326	2890	9422	9534	19490	19490					0.10031486654179389
NQIVVLLVE	9	Unmodified	_NQIVVLLVE_					0	0	0		ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2868041992188	2	513.813325	1025.6121	0.30523	0.00015683	-0.27525	-0.00014143	0.029978	1.5403E-05	513.8130357706207	51.029	0.474	51.099	50.909	51.383	0.069874					38	18	3	0	0	0	0.25644	1	10570	10570		3.9444	1.8846	1	241780			14327	2890	9422	9534	19491	19491					0.10031486654179389
NQLTGHNLFF	10	Unmodified	_NQLTGHNLFF_					0	0	0		SRR|p.R40H|1|0.47|ENSG00000167720|chr17:2315679-2315679|G/A|missense_variant	SRR|p.R40H|1|0.47|ENSG00000167720|chr17:2315679-2315679|G/A|missense_variant	SRR|p.R40H|1|0.47|ENSG00000167720|chr17:2315679-2315679|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.8020629882812	2	595.80128	1189.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.32	1	103.32	102.82	103.82	0								0	0	0	0.33681	1	26554	26554		3.9444	1.6417	1				14328	13400	9423	9535	19492	19492					0.0007964622050167236
NQLTGHNLFF	10	Unmodified	_NQLTGHNLFF_					0	0	0		SRR|p.R40H|1|0.47|ENSG00000167720|chr17:2315679-2315679|G/A|missense_variant	SRR|p.R40H|1|0.47|ENSG00000167720|chr17:2315679-2315679|G/A|missense_variant	SRR|p.R40H|1|0.47|ENSG00000167720|chr17:2315679-2315679|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.8018188476562	2	595.80128	1189.58801	0.3134	0.00018672	0.88339	0.00052632	1.1968	0.00071305	595.8019777891332	100.7	0.53796	100.74	100.55	101.09	0.042831					60	33	2	0	0	0	0.45627	1	25650	25650		3.5965	1.098	1	86979			14329	13400	9423	9535	19493	19493					0.0007964622050167236
NQNIKEPVL	9	Unmodified	_NQNIKEPVL_					0	0	0			REV__ENST00000481773.1_1_3:113952355-113954212:+|nuORF	REV__ENST00000481773.1_1_3:113952355-113954212:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.271728515625	2	527.798206	1053.58186	0.4541	0.00023967	0.028507	1.5046E-05	0.4826	0.00025472	527.798469249369	68.103	0.11784	68.166	68.103	68.221	0.063507					5	3	2	0	0	0	0.25174	1	15692	15692		7.2892	1.5288	1	46437	+		14330	12094	9424	9536	19494	19494					0.057211279889770594
NQPRRARLI	9	Unmodified	_NQPRRARLI_					0	0	0			REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF	REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3444213867188	2	562.343981	1122.67341	0.60547	0.00034048	0.15763	8.8643E-05	0.7631	0.00042913	562.3440175133268	84.663	0.7478	84.686	84.463	85.211	0.023132					70	41	3	0	0	0	0.3354	1	20726	20726		2.0598	2.0598	1	866810	+		14331	9603	9425	9537	19495	19495					0.11697856196838075
NQPVNQPIL	9	Unmodified	_NQPVNQPIL_					0	0	0		ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7853698730469	2	511.785099	1021.55564	0.49432	0.00025299	-0.31212	-0.00015974	0.1822	9.3247E-05	511.78484665105617	60.346	0.52441	60.346	60.119	60.643	0					32	18	2	0	0	0	0.25174	1	13459	13459		7.2892	7.2892	1	259030			14332	514	9426	9538	19496	19496					0.04572858817527958
NQQVWICVVF	10	Unmodified	_NQQVWICVVF_					0	0	0			REV__nc|ENSG00000100336|Q9BPW4|APOL4	REV__nc|ENSG00000100336|Q9BPW4|APOL4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3193359375	2	618.315709	1234.61686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.373	1	70.373	69.873	70.873	0								0	0	0	0.33711	1	16520	16520		3.5965	0.60125	1		+		14333	12763	9427	9539	19497	19497					0.008940475252757096
NRCFNEEL	8	Unmodified	_NRCFNEEL_					0	0	0			REV__ENST00000492329.5_1_3:49721463-49723185:-|nuORF	REV__ENST00000492329.5_1_3:49721463-49723185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7296752929688	2	512.729466	1023.44438	0.41968	0.00021518	0.17766	9.1092E-05	0.59734	0.00030627	512.729476332578	74.719	0.47551	74.768	74.396	74.872	0.048546					41	16	4	0	0	0	0.43379	1	17697	17697		21.747	0	1	409130	+		14334	10321	9428	9540	19498	19498					-0.06640523882072102
NRCWHGCD	8	Unmodified	_NRCWHGCD_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|37|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|37|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|37|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.6878662109375	2	495.687078	989.359604	0.94138	0.00046663	0.83803	0.0004154	1.7794	0.00088203	495.6874392450987	81.429	0.66645	81.429	81.265	81.931	0					35	22	2	0	0	0	0.54097	1	19963	19963		0.69038	0	1	197550			14335	7410	9429	9541	19499	19499					-0.13550172899681456
NRDQTESTI	9	Unmodified	_NRDQTESTI_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2715454101562	2	532.25436	1062.49417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.732	1	76.771	76.271	77.271	0.03923								0	0	0	0.28073	1	18308	18308		2.9952	0	1		+		14336	8030	9430	9542	19500	19500					-0.03458117672403205
NRELFINRYIY	11	Unmodified	_NRELFINRYIY_					0	0	0		CON__Q3SZ57	CON__Q3SZ57	CON__Q3SZ57	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.78399658203125	3	500.936776	1499.7885	-0.11896	-5.9594E-05	-1.9997	-0.0010017	-2.1186	-0.0010613	500.93544217607894	30.545	0.48719	30.545	30.382	30.869	0					58	26	3	0	0	0	0.31099	1	4493	4493		1.0136	0.55906	1	51652		+	14337	234	9431	9543	19501	19501					0.058594958173443956
NREWQNPL	8	Unmodified	_NREWQNPL_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7650756835938	2	528.764697	1055.51484	-0.20106	-0.00010631	0.13177	6.9673E-05	-0.069294	-3.664E-05	528.7647063337632	25.209	1.3513	25.209	24.986	26.338	0					259	108	4	0	0	0	0.50815	2	3030	3030;3070		11.64	1.5664	1	315480	+		14338	10954	9432	9544	19502;19503	19502					-0.010694825021118959
NREYYRDYDRW	11	Unmodified	_NREYYRDYDRW_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.76318359375	3	545.914811	1634.7226	0.039915	2.179E-05	-2.6028	-0.0014209	-2.5629	-0.0013991	545.9131893686816	22.536	0.25557	22.638	22.527	22.783	0.10178					36	25	2	0	0	0	0.31101	1	2025	2025		0.094841	0.094841	1	19818	+		14339	8314	9433	9545	19504	19504					-0.06936945095549163
NRGECTEDKL	10	Unmodified	_NRGECTEDKL_					0	0	0			REV__ENST00000506649.5_1_6:109690056-109702985:-|nuORF	REV__ENST00000506649.5_1_6:109690056-109702985:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.77001953125	2	582.769319	1163.52409	0.24487	0.0001427	0.69095	0.00040267	0.93582	0.00054537	582.7696614891018	58.627	2.4128	58.627	58.256	60.669	0					134	90	3	0	0	0	0.38912	1	12902	12902		13.042	0.80181	1	219540	+		14340	12228	9434	9546	19505	19505					-0.05113501998744141
NRGQIKLA	8	Unmodified	_NRGQIKLA_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2749938964844	2	450.274701	898.534849	0.64	0.00028818	-0.51997	-0.00023413	0.12003	5.4047E-05	450.27437897310676	87.927	1.0788	87.927	87.664	88.743	0					105	41	4	0	0	0	0.54081	1	22015	22015		0.79363	0	1	3244100			14341	690	9435	9547	19506	19506					0.08152313228492858
NRGRLTKS	8	Unmodified	_NRGRLTKS_					0	0	0			REV__nc|ENSG00000150337|P12314-2|FCGR1A	REV__nc|ENSG00000150337|P12314-2|FCGR1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.27642822265625	2	466.275232	930.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.3	1	108.3	107.8	108.8	0								0	0	0	0.38822	1	27930	27930		4.756	0.42677	1		+		14342	9626	9436	9548	19507	19507					0.06786527597409986
NRHNIISLL	9	Unmodified	_NRHNIISLL_					0	0	0			REV__ENST00000359175.8_1_3:161089388-161089460:-|nuORF	REV__ENST00000359175.8_1_3:161089388-161089460:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.300048828125	2	540.31964	1078.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.53	1	102.57	102.07	103.07	0.040916								0	0	0	0.28527	1	26153	26153		2.0598	0	1		+		14343	11525	9437	9549	19508	19508					0.08855942837112707
NRIKIGAQ	8	Unmodified	_NRIKIGAQ_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2747802734375	2	450.274701	898.534849	0.64	0.00028818	-0.51997	-0.00023413	0.12003	5.4047E-05	450.27437897310676	87.927	1.0788	87.927	87.664	88.743	0					105	41	4	0	0	0	0.53817	1	21828	21828		2.5775	0.27475	1	3244100	+		14344	9295	9438	9550	19509	19509					0.08152313228504227
NRKEEPGQSSM	11	Unmodified	_NRKEEPGQSSM_					0	0	0			REV__ENST00000609682.1_1_3:101396927-101397152:+|nuORF	REV__ENST00000609682.1_1_3:101396927-101397152:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7944946289062	2	631.793326	1261.5721	0.17107	0.00010808	0.59833	0.00037802	0.7694	0.0004861	631.7936601016589	61.78	1.3871	61.78	61.582	62.969	0					109	57	3	0	0	0	0.36864	1	14027	14027		10.151	2.5416	1	1001100	+		14345	12646	9439	9551	19510	19510					-0.04822428078705343
NRKLKRELPF	10	Unmodified	_NRKLKRELPF_					0	0	0		nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-6|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB;ENSG00000073605|ENST00000418519|GSDMB	nc|ENSG00000073605|Q8TAX9-2|GSDMB	nc|ENSG00000073605|Q8TAX9-2|GSDMB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.9328308105469	3	434.266456	1299.77754	0.065894	2.8615E-05	1.6458	0.0007147	1.7117	0.00074332	434.26728235848384	91.304	0.44339	91.34	91.169	91.612	0.035439					22	15	2	0	0	0	0.31853	1	22764	22764		0.62683	0.21856	1	45113			14346	796	9440	9552	19511	19511					0.1396413823367766
NRLSKKEL	8	Unmodified	_NRLSKKEL_					0	0	0		ENST00000487593.1_1_20:52779237-52781081:-|nuORF;nc|ENSG00000019186|Q07973-3|CYP24A1;nc|ENSG00000019186|Q07973-2|CYP24A1;ENSG00000019186|ENST00000216862|CYP24A1	ENST00000487593.1_1_20:52779237-52781081:-|nuORF	ENST00000487593.1_1_20:52779237-52781081:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.30108642578125	2	494.300916	986.587279	0.59673	0.00029496	-0.14747	-7.2896E-05	0.44925	0.00022207	494.300757268769	91.814	1.0456	91.814	91.507	92.552	0					107	39	4	0	0	0	0.53858	1	23148	23148		2.3027	0	1	2171200			14347	469	9441	9553	19512	19512					0.09344851571461277
NRLVLLMPRP	10	Unmodified	_NRLVLLMPRP_					0	0	0			REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF	REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5816955566406	3	403.581387	1207.72233	0.65617	0.00026482	-0.77425	-0.00031247	-0.11807	-4.7652E-05	403.5811433248237	99.854	0.42632	99.854	99.788	100.21	0					35	23	2	0	0	0	0.47161	1	25514	25514		0.69767	0.07084	1	252340	+		14348	10311	9442	9554	19513	19513					0.12678008441571365
NRMDFEDLGLV	11	Unmodified	_NRMDFEDLGLV_					0	0	0		RNF181|p.C94Sfs*24|1|0.11|ENSG00000168894|chr2:85596879-85596883|TGCCT/-|frameshift_variant;ENST00000461845.1_1_2:85822886-85823939:+|nuORF;ENSG00000168894|ENST00000306368|RNF181	RNF181|p.C94Sfs*24|1|0.11|ENSG00000168894|chr2:85596879-85596883|TGCCT/-|frameshift_variant	RNF181|p.C94Sfs*24|1|0.11|ENSG00000168894|chr2:85596879-85596883|TGCCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2149963378906	3	436.879939	1307.61799	0.3211	0.00014028	-0.022894	-1.0002E-05	0.29821	0.00013028	437.21471385929135	89.648	0.98627	89.648	89.03	90.017	0					53	38	2	0	0	0	0.4167	1	22461	22461		0.50596	0	1	81375			14349	4311	9443	9555	19514	19514					-0.02351782896471377
NRNDDYTL	8	Unmodified	_NRNDDYTL_					0	0	0		ENST00000515744.5_1_4:93744106-94033158:+|nuORF;ENST00000505687.5_1_4:93225807-94138074:+|nuORF;GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant;GRID2|p.N607Kfs*56|1|0.12|ENSG00000152208|chr4:93455934-93455935|-/A|frameshift_variant;ENSG00000152208|ENST00000282020|GRID2	ENST00000515744.5_1_4:93744106-94033158:+|nuORF	ENST00000515744.5_1_4:93744106-94033158:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7298583984375	2	505.73052	1009.44649	-0.44877	-0.00022696	0.016142	8.1636E-06	-0.43263	-0.00021879	505.73049366871953	17.986	1.0092	17.986	17.806	18.815	0					259	118	4	0	0	0	0.54097	1	1124	1124		0.69038	0	1	576260			14350	3489	9444	9556	19515	19515					-0.05785771872615442
NRNIRTDTG	9	Unmodified	_NRNIRTDTG_					0	0	0		ENSG00000177599|ENST00000323169|ZNF491	ENSG00000177599|ENST00000323169|ZNF491	ENSG00000177599|ENST00000323169|ZNF491	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.773193359375	2	523.770511	1045.52647	-0.11921	-6.244E-05	4.0297	0.0021107	3.9105	0.0020482	523.7725861070941	32.822	0.22995	32.822	32.675	32.905	0					13	9	2	0	0	0	0.32112	1	5147	5147		3.9444	0	1	15537			14351	4707	9445	9557	19516	19516					0.005527145212226969
NRNLTMFYV	9	Unmodified	_NRNLTMFYV_					0	0	0			REV__nc|ENSG00000141503|Q8N4C8-5|MINK1	REV__nc|ENSG00000141503|Q8N4C8-5|MINK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3052368164062	2	579.292233	1156.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.39	1	104.43	103.93	104.93	0.034004								0	0	0	0.25992	1	26688	26688		7.2892	0	1		+		14352	9402	9446	9558	19517	19517					-0.002108120258526469
NRQKSIAGF	9	Unmodified	_NRQKSIAGF_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.77362060546875	2	510.78289	1019.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.431	1	90.465	89.965	90.965	0.034065								0	0	0	0.24995	1	22478	22478		9.3474	4.1168	1				14353	4984	9447	9559	19518	19518					0.04223394394625757
NRQREIEIRFD	11	Unmodified	_NRQREIEIRFD_					0	0	0		nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-2|HJURP	nc|ENSG00000123485|Q8NCD3-2|HJURP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.6917724609375	3	492.595301	1474.76407	-0.33187	-0.00016348	-0.21269	-0.00010477	-0.54456	-0.00026825	492.5950561778676	41.877	0.24493	41.967	41.893	42.138	0.089764					13	9	2	0	0	0	0.31101	1	7741	7741		0.094841	0	1	23949			14354	2220	9448	9560	19519	19519					0.04568235663759879
NRSERWDAY	9	Unmodified	_NRSERWDAY_					0	0	0		ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.277099609375	2	598.775793	1195.53703	-0.40173	-0.00024055	-0.59583	-0.00035677	-0.99757	-0.00059732	598.775453948149	15.595	0.12402	15.595	15.532	15.656	0					25	15	2	0	0	0	0.34646	1	571	571		0.6015	0	1	11110			14355	2229	9449	9561	19520	19520					-0.05291302824343802
NRSHVYAI	8	Unmodified	_NRSHVYAI_					0	0	0		nc|ENSG00000145723|Q9NXP7-3|GIN1;ENSG00000145723|ENST00000399004|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2551574707031	2	480.256508	958.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.496	1	53.561	53.061	54.061	0.06543								0	0	0	0.38822	1	11241	11241		2.5775	0.27475	1				14356	3258	9450	9562	19521	19521					0.017554363318026844
NRSSCQKI	8	Unmodified	_NRSSCQKI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.2395324707031	2	468.240001	934.465449	0.31571	0.00014783	-0.89863	-0.00042078	-0.58292	-0.00027295	468.23936290399735	68.289	0.67116	68.289	68.021	68.692	0					38	23	2	0	0	0	0.53614	1	15962	15962		3.9444	0	1	84975			14357	3554	9451	9563	19522	19522					-0.004405137825528982
NRSSCQKI	8	Unmodified	_NRSSCQKI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	468.240001	934.465449	0.31571	0.00014783	-0.89863	-0.00042078	-0.58292	-0.00027295	468.23936290399735	68.289	0.67116	68.289	68.021	68.692	0	0.009241	-7.1114E-05	NaN	3.9444	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84975			14358	3554	9451	9563							-0.004405137825528982
NRSSCQKI	8	Unmodified	_NRSSCQKI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.240001	934.465449	0.22587	0.00010576	-0.63147	-0.00029568	-0.4056	-0.00018992	468.2393799462029	68.207	0.59234	68.271	68.073	68.665	0.063507	-0.009241	0.00017908	NaN	3.9444	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88042			14359	3554	9451	9563							-0.004405137825528982
NRTFNLTLTH	10	Unmodified	_NRTFNLTLTH_					0	0	0			REV__ENST00000472564.1_1_13:113960786-113974926:+|nuORF	REV__ENST00000472564.1_1_13:113960786-113974926:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2193603515625	3	406.219283	1215.63602	0.060062	2.4398E-05	-0.12594	-5.1157E-05	-0.065874	-2.6759E-05	406.21918085901467	28.409	0.7882	28.409	28.221	29.009	0					90	41	3	0	0	0	0.46746	1	3880	3880		0.62683	0	1	103190	+		14360	10688	9452	9564	19523	19523					0.036827201405458254
NRTTMEVQQA	10	Unmodified	_NRTTMEVQQA_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2850952148438	2	589.285137	1176.55572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.571	1	14.571	14.071	15.071	0								0	0	0	0.33916	1	395	395		1.1933	0	1				14361	1777	9453	9565	19524	19524					-0.02549509244795445
NRWFKFNF	8	Unmodified	_NRWFKFNF_					0	0	0			REV__nc|ENSG00000139505|Q9Y217-2|MTMR6	REV__nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.292724609375	2	579.795801	1157.57705	0.40439	0.00023446	-0.69938	-0.0004055	-0.29499	-0.00017103	579.7953281562773	101.76	0.064468	101.76	101.74	101.81	0					5	4	2	0	0	0	0.3576	1	26079	26079		2.3027	0.4585	1	36575	+		14362	9342	9454	9566	19525	19525					0.004562886369058106
NRYEYSRF	8	Unmodified	_NRYEYSRF_					0	0	0			REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2684936523438	2	567.76998	1133.52541	0.48479	0.00027525	2.0407	0.0011586	2.5255	0.0014339	567.7708486540783	98.99	0.12471	99.032	98.987	99.112	0.041931					12	9	2	0	0	0	0.3576	1	25087	25087		2.5775	0	1	51354	+		14363	11969	9455	9567	19526	19526					-0.0360149984767304
NSADISITLR	10	Unmodified	_NSADISITLR_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.8346557617188	2	545.29857	1088.58259	0.19818	0.00010807	0.10314	5.6244E-05	0.30132	0.00016431	545.2984428596114	48.968	0.22863	48.968	48.888	49.116	0					13	7	2	0	0	0	0.29417	1	9999	9999		28.181	14.566	1	74056			14364	3872	9456	9568	19527	19527					0.04183922638048898
NSAVIAQQR	9	Unmodified	_NSAVIAQQR_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-5|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2135925292969	2	493.772522	985.530492	-0.15339	-7.574E-05	0.096584	4.769E-05	-0.056807	-2.805E-05	493.7726234760486	22.767	0.32851	22.767	22.643	22.972	0					39	30	2	0	0	0	0.24683	1	2215	2215		11.495	11.495	1	19055			14365	4030	9457	9569	19528	19528					0.03714804014953188
NSAVIAQQR	9	Unmodified	_NSAVIAQQR_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-5|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.772522	985.530492	0.10637	5.2524E-05	-0.059301	-2.9281E-05	0.047072	2.3243E-05	493.7724485688732	22.565	0.2546	22.667	22.573	22.827	0.10178	-0.050149	-6.5593E-05	NaN	11.495	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19101			14366	4030	9457	9569							0.03714804014953188
NSEDHIGNIE	10	Unmodified	_NSEDHIGNIE_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2979125976562	2	564.251817	1126.48908	0.37476	0.00021146	-2.9891	-0.0016866	-2.6144	-0.0014752	564.7522703777421	75.11	0.43538	75.154	74.921	75.357	0.044037					25	15	3	0	0	0	0.31689	1	17831	17831		8.1555	4.559	1	222220	+		14367	9239	9458	9570	19529	19529					-0.06910421535053501
NSFGHLSFIE	10	Unmodified	_NSFGHLSFIE_					0	0	0			REV__nc|ENSG00000138821|Q9C0K1-2|SLC39A8	REV__nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7926635742188	2	575.780013	1149.54547	0.35843	0.00020637	-1.6193	-0.00093236	-1.2609	-0.00072598	575.7791712631945	73.576	1.6039	73.629	73.461	75.065	0.052567					121	58	3	0	0	0	0.39662	1	17613	17613		12.241	1.4167	1	1066500	+		14368	9329	9459	9571	19530	19530					-0.023317489077271603
NSGREDSENTF	11	Unmodified	_NSGREDSENTF_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.2636108398438	2	628.262913	1254.51127	0.026417	1.6597E-05	1.5541	0.0009764	1.5805	0.00099299	628.2637989542777	48.57	0.54597	48.57	48.399	48.945	0					27	18	2	0	0	0	0.34492	1	9866	9866		12.873	3.4895	1	73260			14369	3929	9460	9572	19531	19531					-0.10580241857269357
NSGREDSENTF	11	Unmodified	_NSGREDSENTF_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.2653198242188	2	628.262913	1254.51127	0.30234	0.00018995	3.6421	0.0022882	3.9445	0.0024782	628.2635756860257	50.561	0.96923	50.634	50.319	51.288	0.07312					86	35	4	0	0	0	0.37393	3	10392	10364;10392;10428		9.544	2.3459	1	141000			14370	3929	9460	9572	19532;19533;19534	19533					-0.10580241857269357
NSHDGLDGPTY	11	Unmodified	_NSHDGLDGPTY_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.24951171875	2	588.251817	1174.48908	0.75109	0.00044183	-2.1634	-0.0012726	-1.4123	-0.00083081	588.2503117302193	92.698	0.36557	92.698	92.531	92.897	0					26	13	3	0	0	0	0.40693	1	23331	23331		2.7352	0.45242	1	162400			14371	2530	9461	9573	19535	19535					-0.09118421535026755
NSHMDDFHP	9	Unmodified	_NSHMDDFHP_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2168579101562	2	550.216723	1098.41889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.87	1	27.952	27.452	28.452	0.082134								0	0	0	0.29233	1	3544	3544		0.6015	0	1		+		14372	10374	9462	9574	19536	19536					-0.12637998404511563
NSHSRFWL	8	Unmodified	_NSHSRFWL_					0	0	0		ENST00000417775.5_1_1:75190514-75198761:-|nuORF	ENST00000417775.5_1_1:75190514-75198761:-|nuORF	ENST00000417775.5_1_1:75190514-75198761:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2929077148438	2	523.761958	1045.50936	-0.18215	-9.5402E-05	0.90602	0.00047454	0.72388	0.00037914	523.7623774866449	30.298	0.33832	30.374	30.211	30.55	0.075403					26	20	2	0	0	0	0.3576	1	4274	4274		0.69038	0	1	17954			14373	6434	9463	9575	19537	19537					-0.011571612938951148
NSISYKFEY	9	Unmodified	_NSISYKFEY_					0	0	0			REV__tr|U7STE2|U7STE2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01452PE=4SV=1	REV__tr|U7STE2|U7STE2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01452PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7947387695312	2	575.774396	1149.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.356	1	97.356	96.856	97.856	0								0	0	0	0.22204	1	24743	24743		14.838	3.198	1		+		14374	13168	9464	9576	19538	19538					-0.03454571001839213
NSKNRLRVF	9	Unmodified	_NSKNRLRVF_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA	REV__nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.329833984375	2	567.330539	1132.64652	0.51539	0.0002924	-1.1702	-0.00066391	-0.65485	-0.00037152	567.3295772750229	83.688	1.0923	83.688	83.173	84.265	0					87	29	4	0	0	0	0.29105	1	20542	20542		7.9102	7.9102	1	672940	+		14375	9858	9465	9577	19539	19539					0.08550747585650242
NSKNRLRVF	9	Unmodified	_NSKNRLRVF_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA	REV__nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.330322265625	2	567.330539	1132.64652	0.23276	0.00013205	-0.75811	-0.0004301	-0.52536	-0.00029805	567.3298509459299	83.682	1.1983	83.703	83.068	84.266	0.021744					81	25	4	0	0	0	0.29105	2	20377	20377;20427		7.9102	7.9102	1	707500	+		14376	9858	9465	9577	19540;19541	19540					0.08550747585650242
NSKNRLRVF	9	Unmodified	_NSKNRLRVF_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA	REV__nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3306884765625	2	567.330539	1132.64652	0.3007	0.0001706	-0.53059	-0.00030102	-0.22989	-0.00013042	567.3302441646515	88.737	0.56772	88.769	88.49	89.058	0.032257					64	24	3	0	0	0	0.29105	1	21990	21990		7.9102	7.9102	1	355080	+		14377	9858	9465	9577	19542	19542					0.08550747585650242
NSKNRLRVF	9	Unmodified	_NSKNRLRVF_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA	REV__nc|ENSG00000160789|P02545-5|LMNA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	567.330539	1132.64652	0.3007	0.0001706	-0.53059	-0.00030102	-0.22989	-0.00013042	567.3302441646515	88.737	0.56772	88.769	88.49	89.058	0.032257	0.009449	-3.3611E-06	NaN	7.9102	64	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355080	+		14378	9858	9465	9577							0.08550747585650242
NSLGVVPYL	9	Unmodified	_NSLGVVPYL_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2716064453125	2	481.271293	960.528032	-0.091181	-4.3883E-05	0.31396	0.0001511	0.22277	0.00010721	481.27129918438044	51.913	0.62329	51.913	51.682	52.305	0					38	21	3	0	0	0	0.24021	1	10925	10925		13.906	0	1	201000			14379	604	9466	9578	19543	19543					0.04618955557270965
NSLGVVPYL	9	Unmodified	_NSLGVVPYL_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.27130126953125	2	481.271293	960.528032	-0.0016801	-8.086E-07	0.42712	0.00020556	0.42544	0.00020475	481.27122620797286	51.852	0.49536	51.92	51.707	52.203	0.067173					32	16	3	0	0	0	0.24021	1	10725	10725		13.906	0	1	185490			14380	604	9466	9578	19544	19544					0.04618955557270965
NSLVEIVLEHD	11	Unmodified	_NSLVEIVLEHD_					0	0	0			REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF	REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3301391601562	2	634.330067	1266.64558	-0.031804	-2.0174E-05	0.40927	0.00025961	0.37746	0.00023944	634.3301808404761	35.183	0.41532	35.183	35.002	35.417	0					21	14	2	0	0	0	0.39569	1	5841	5841		5.2969	1.7004	1	39459	+		14381	8779	9467	9579	19545	19545					0.022924436354287536
NSLVEIVLEHD	11	Unmodified	_NSLVEIVLEHD_					0	0	0			REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF	REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3301391601562	2	634.330067	1266.64558	0.095512	6.0586E-05	0.31904	0.00020238	0.41455	0.00026296	634.831921548714	35.09	0.26445	35.169	35.058	35.322	0.078831					17	10	2	0	0	0	0.38057	1	5687	5687		8.7454	4.801	1	39196	+		14382	8779	9467	9579	19546	19546					0.022924436354287536
NSMGLEQSGR	10	Unmodified	_NSMGLEQSGR_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7658081054688	2	539.75093	1077.48731	0.19773	0.00010672	4.3223	0.002333	4.5201	0.0024397	540.2555827975625	73.832	0.34537	73.832	73.661	74.006	0					26	11	3	0	0	0	0.35104	1	17578	17578		17.113	1.2657	1	201710	+		14383	8115	9468	9580	19547	19547					-0.048337538246414624
NSNLPLPCM	9	Unmodified	_NSNLPLPCM_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.26025390625	2	494.733163	987.451773	0.28872	0.00014284	-2.0519	-0.0010151	-1.7632	-0.00087229	494.73202116761325	35.843	0.15258	35.843	35.791	35.944	0					8	6	2	0	0	0	0.25644	1	6054	6054		3.9444	1.3669	1	8595.3	+		14384	10629	9469	9581	19548	19548					-0.04245507606015053
NSNYLKGF	8	Unmodified	_NSNYLKGF_					0	0	0			REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7383728027344	2	471.737617	941.460681	0.085319	4.0248E-05	0.11727	5.532E-05	0.20259	9.5568E-05	471.7375691960772	46.875	0.97956	46.875	46.66	47.64	0					86	37	4	0	0	0	0.53118	1	9520	9520		7.2892	2.5332	1	363080	+		14385	12555	9470	9582	19549	19549					-0.012390746536652841
NSPMESADFYE	11	Unmodified	_NSPMESADFYE_					0	0	0		ENST00000425420.2_19:33792364-33793425:-|nuORF;nc|ENSG00000245848|P49715-4|CEBPA	ENST00000425420.2_19:33792364-33793425:-|nuORF	ENST00000425420.2_19:33792364-33793425:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.252685546875	2	645.253168	1288.49178	0.16403	0.00010584	-0.017342	-1.119E-05	0.14668	9.4648E-05	645.252890731511	83.567	0.66382	83.589	83.251	83.915	0.021744					36	23	2	0	0	0	0.35693	1	20372	20372		11.495	1.3441	1	215130			14386	6466	9471	9583	19550	19550					-0.14092334192400813
NSQENDDWKR	10	Unmodified	_NSQENDDWKR_					0	0	0			REV__ENST00000498873.5_1_4:120419020-120434055:+|nuORF	REV__ENST00000498873.5_1_4:120419020-120434055:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.28564453125	2	646.286722	1290.55889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.495	1	28.495	27.995	28.995	0								0	0	0	0.33984	1	3855	3855		0.40072	0.050084	1		+		14387	12197	9472	9584	19551	19551					-0.07476542866447744
NSRGQHQQ	8	Unmodified	_NSRGQHQQ_					0	0	0		ENST00000266557.3_1_12:6554080-6554389:+|nuORF	ENST00000266557.3_1_12:6554080-6554389:+|nuORF	ENST00000266557.3_1_12:6554080-6554389:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7286682128906	2	477.728646	953.44274	0.21054	0.00010058	-0.2175	-0.00010391	-0.0069577	-3.3239E-06	477.72864967801377	93.317	0.41052	93.355	93.195	93.606	0.037369					29	17	2	0	0	0	0.54081	1	23334	23334		0.79363	0	1	117200			14388	5903	9473	9585	19552	19552					-0.03584396855819705
NSRSNDTTFLL	11	Unmodified	_NSRSNDTTFLL_					0	0	0			REV__CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	REV__CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3182373046875	2	634.317491	1266.62043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.328	1	30.328	29.828	30.828	0								0	0	0	0.34185	1	4395	4395		0	0	1		+		14389	7861	9474	9586	19553	19553					-0.002216111671486942
NSSDINYQTR	10	Unmodified	_NSSDINYQTR_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2783203125	2	599.278366	1196.54218	-0.15325	-9.1837E-05	0.049854	2.9877E-05	-0.10339	-6.1961E-05	599.2783746936084	27.01	0.49945	27.01	26.812	27.312	0					76	33	3	0	0	0	0.29808	2	3428	3392;3428		22.775	22.775	1	83784			14390	2377	9475	9587	19554;19555	19555					-0.04823043752389822
NSSDINYQTR	10	Unmodified	_NSSDINYQTR_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2783203125	2	599.278366	1196.54218	-0.12626	-7.5668E-05	0.18119	0.00010858	0.054926	3.2916E-05	599.2785145099119	26.87	0.49354	26.957	26.793	27.286	0.0867					65	34	3	0	0	0	0.35889	2	3269	3232;3269		16.275	12.085	1	79366			14391	2377	9475	9587	19556;19557	19557					-0.04823043752389822
NSSGRGEH	8	Unmodified	_NSSGRGEH_					0	0	0			REV__ENST00000526120.5_2_11:17290822-17304375:+|nuORF	REV__ENST00000526120.5_2_11:17290822-17304375:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1886901855469	2	422.188823	842.363092	0.29471	0.00012442	-0.5215	-0.00022017	-0.22679	-9.5749E-05	422.18846760482654	101.11	0.71098	101.15	100.9	101.61	0.042839					62	43	2	0	0	0	0.54081	1	25694	25694		0.79363	0	1	345840	+		14392	12327	9476	9588	19558	19558					-0.06439463529807199
NSSKDVAVM	9	Oxidation (M)	_NSSKDVAVM(Oxidation (M))_		NSSKDVAVM(1)		NSSKDVAVM(69)	0	0	1		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7315673828125	2	483.731674	965.448796	-0.58748	-0.00028418	0.34407	0.00016644	-0.2434	-0.00011774	483.7318149143855	19.957	1.0645	19.957	19.716	20.781	0					250	111	4	0	0	0	0.0093779	3	1467	1439;1467;1499		69.105	36.988	1	273280			14393	2175	9477	9589	19559;19560;19561	19560		135			-0.03531059459157859
NSSKDVAVM	9	Oxidation (M)	_NSSKDVAVM(Oxidation (M))_		NSSKDVAVM(1)		NSSKDVAVM(44)	0	0	1		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7315673828125	2	483.731674	965.448796	-0.18124	-8.7673E-05	0.055555	2.6874E-05	-0.12569	-6.0799E-05	483.7316399402883	20.918	1.357	21.018	20.601	21.958	0.099499					284	148	3	0	0	0	0.048027	3	1604	1604;1635;1694		43.772	22.026	1	125950			14394	2175	9477	9589	19562;19563;19564	19562		135			-0.03531059459157859
NSSKDVAVM	9	Unmodified	_NSSKDVAVM_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.7340087890625	2	475.734217	949.453881	-0.40034	-0.00019045	0.12217	5.8122E-05	-0.27816	-0.00013233	475.73422806216695	28.699	0.65253	28.699	28.488	29.141	0					72	33	4	0	0	0	0.11198	1	3905	3905		29.841	11.706	1	160610			14395	2175	9477	9590	19565	19565					-0.022867555965490283
NSSKDVAVM	9	Unmodified	_NSSKDVAVM_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.73419189453125	2	475.734217	949.453881	-0.39591	-0.00018835	0.32066	0.00015255	-0.075243	-3.5796E-05	475.734266065522	28.575	0.48259	28.658	28.453	28.935	0.082134					64	28	4	0	0	0	0.081383	2	3745	3745;3786		36.506	8.0194	1	137180			14396	2175	9477	9590	19566;19567	19566					-0.022867555965490283
NSSKDVAVM	9	Unmodified	_NSSKDVAVM_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	475.734217	949.453881	-0.39103	-0.00018603	2.5076	0.001193	2.1166	0.0010069	475.7361069863681	28.925	0.09889	29.004	28.931	29.03	0.078287	0.15246	0.0022624	NaN	29.841	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8220.6			14397	2175	9477	9590							-0.022867555965490283
NSTEPDPLL	9	Unmodified	_NSTEPDPLL_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.75830078125	2	493.245472	984.476391	0.41187	0.00020315	0.1922	9.48E-05	0.60407	0.00029795	493.2454405194422	57.144	0.54679	57.144	56.916	57.463	0					39	19	3	0	0	0	0.11816	2	12495	12495;12546		28.495	8.08	1	354220			14398	1652	9478	9591	19568;19569	19568					-0.0164683292726977
NSTEPDPLL	9	Unmodified	_NSTEPDPLL_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.758544921875	2	493.245472	984.476391	0.46179	0.00022778	0.10827	5.3404E-05	0.57006	0.00028118	493.2453677533837	57.126	0.49689	57.194	56.916	57.413	0.068375					32	19	2	0	0	0	0.11198	2	12323	12323;12366		29.841	7.1043	1	296060			14399	1652	9478	9591	19570;19571	19570					-0.0164683292726977
NSTSIEPRL	9	Unmodified	_NSTSIEPRL_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|3|fusion	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7721252441406	2	508.772188	1015.52982	-0.44715	-0.0002275	0.076879	3.9114E-05	-0.37028	-0.00018839	508.77221106732446	41.045	0.56664	41.045	40.787	41.354	0					48	19	3	0	0	0	0.085487	2	7571	7571;7620		35.612	20.364	1	198120			14400	193	9479	9592	19572;19573	19572					0.022679645752418764
NSTSIEPRL	9	Unmodified	_NSTSIEPRL_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|3|fusion	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.77215576171875	2	508.772188	1015.52982	-0.27644	-0.00014065	0.085786	4.3646E-05	-0.19066	-9.7001E-05	508.77226112486863	40.953	0.57561	41.042	40.823	41.398	0.089642					46	21	3	0	0	0	0.038996	2	7464	7419;7464		45.74	21.719	1	158900			14401	193	9479	9592	19574;19575	19575					0.022679645752418764
NTAFSTASSL	10	Unmodified	_NTAFSTASSL_					0	0	0			REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1	REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7432861328125	2	499.743096	997.47164	-0.11538	-5.7659E-05	0.34962	0.00017472	0.23424	0.00011706	499.7431511368595	40.095	0.79527	40.095	39.894	40.69	0					82	27	4	0	0	0	0.40359	1	7397	7397		11.495	4.2055	1	458210	+		14402	13060	9480	9593	19576	19576					-0.027197170700446804
NTALPLALR	9	Unmodified	_NTALPLALR_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7979431152344	2	484.798009	967.581465	0.17864	8.6604E-05	0.050205	2.4339E-05	0.22884	0.00011094	484.79795496582744	53.633	0.11367	53.699	53.627	53.74	0.06543					7	5	2	0	0	0	0.28472	1	11291	11291		8.7454	3.0136	1	29671			14403	5656	9481	9594	19577	19577					0.09637753059803345
NTALPLALR	9	Unmodified	_NTALPLALR_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.798009	967.581465	0.1111	5.3859E-05	0.094315	4.5724E-05	0.20541	9.9583E-05	484.79802410616674	53.608	0.27033	53.608	53.513	53.783	0	-0.045431	1.8694E-05	NaN	8.7454	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37655			14404	5656	9481	9594							0.09637753059803345
NTEERYENF	9	Unmodified	_NTEERYENF_					0	0	0			REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2604370117188	2	601.259642	1200.50473	0.44791	0.00026931	1.0154	0.00061054	1.4634	0.00087985	601.7617693379362	61.353	0.3666	61.353	61.11	61.477	0					30	12	3	0	0	0	0.22083	1	13754	13754		16.149	6.766	1	553050	+		14405	13237	9482	9595	19578	19578					-0.08750135017999128
NTEERYENF	9	Unmodified	_NTEERYENF_					0	0	0			REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.29833984375	2	601.259642	1200.50473	0.36544	0.00021972	1.0985	0.00066047	1.4639	0.00088019	601.2602768606536	61.198	0.42594	61.272	61.027	61.453	0.073421					33	14	3	0	0	0	0.24683	1	13563	13563		11.495	5.7629	1	288880	+		14406	13237	9482	9595	19579	19579					-0.08750135017999128
NTEERYENF	9	Unmodified	_NTEERYENF_					0	0	0			REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	601.259642	1200.50473	0.44791	0.00026931	1.0154	0.00061054	1.4634	0.00087985	601.7617693379362	61.353	0.3666	61.353	61.11	61.477	0	0.040635	-5.0232E-05	NaN	16.149	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553050	+		14407	13237	9482	9595							-0.08750135017999128
NTEIWDLRT	9	Unmodified	_NTEIWDLRT_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2926025390625	2	574.290745	1146.56694	0.16034	9.2081E-05	-0.030796	-1.7686E-05	0.12954	7.4395E-05	574.2910473762183	35.506	4.4992	35.585	35.279	39.778	0.078827					435	173	5	0	0	0	0.33978	2	6764	6764;7042		1.4819	0	1	7724500			14408	3235	9483	9596	19580;19581	19580					-0.00048363879000135057
NTELHLQR	8	Unmodified	_NTELHLQR_					0	0	0			REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant	REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7722473144531	2	505.772522	1009.53049	-0.36739	-0.00018581	-0.15071	-7.6223E-05	-0.51809	-0.00026204	505.77277892641456	21.558	2.4409	21.558	21.341	23.782	0					622	225	5	0	0	0	0.40691	2	2096	2096;2141		25.399	1.3787	1	5524900	+		14409	9698	9484	9597	19582;19583	19582					0.026108040149665612
NTELHLQR	8	Unmodified	_NTELHLQR_					0	0	0			REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant	REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7484436035156	2	505.772522	1009.53049	-0.31263	-0.00015812	-0.95792	-0.00048449	-1.2705	-0.00064261	505.7718945520693	24.255	0.741	24.255	24.03	24.771	0					105	63	2	0	0	0	0.3576	1	2666	2666		4.756	0.81161	1	34507	+		14410	9698	9484	9597	19584	19584					0.026108040149665612
NTELHLQR	8	Unmodified	_NTELHLQR_					0	0	0			REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant	REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7724304199219	2	505.772522	1009.53049	0.0088497	4.4759E-06	-0.4641	-0.00023473	-0.45525	-0.00023025	505.77265403156616	21.373	2.3248	21.474	21.254	23.579	0.10178					564	229	5	0	0	0	0.4772	1	1869	1869		15.847	1.0089	1	5928000	+		14411	9698	9484	9597	19585	19585					0.026108040149665612
NTEPIVHR	8	Unmodified	_NTEPIVHR_					0	0	0			REV__nc|ENSG00000142606|Q495T6-2|MMEL1	REV__nc|ENSG00000142606|Q495T6-2|MMEL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.26190185546875	2	483.261791	964.509028	-0.47258	-0.00022838	0.19376	9.3638E-05	-0.27882	-0.00013474	483.2618838332606	24.979	1.9818	24.979	24.712	26.694	0					333	152	4	0	0	0	0.53494	1	3207	3207		4.756	0.81161	1	1090700	+		14412	9438	9485	9598	19586	19586					0.025354189862468957
NTERDKMLL	9	Unmodified	_NTERDKMLL_					0	0	0			REV__ENST00000567262.5_1_X:135958813-135961586:-|nuORF	REV__ENST00000567262.5_1_X:135958813-135961586:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.795166015625	2	560.294973	1118.57539	0.36409	0.000204	-3.7939	-0.0021257	-3.4299	-0.0019217	560.2929233753363	88.921	0.37881	88.921	88.764	89.143	0					33	14	3	0	0	0	0.23216	1	22179	22179		14.838	0.93222	1	135400	+		14413	9567	9486	9599	19587	19587					0.020848667659720377
NTERDKMLL	9	Unmodified	_NTERDKMLL_					0	0	0			REV__ENST00000567262.5_1_X:135958813-135961586:-|nuORF	REV__ENST00000567262.5_1_X:135958813-135961586:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	560.294973	1118.57539	0.36409	0.000204	-3.7939	-0.0021257	-3.4299	-0.0019217	560.2929233753363	88.921	0.37881	88.921	88.764	89.143	0	-0.023329	0.00032502	NaN	14.838	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135400	+		14414	9567	9486	9599							0.020848667659720377
NTFDFIKVLR	10	Unmodified	_NTFDFIKVLR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.23944091796875	3	418.239796	1251.69756	0.76284	0.00031905	-0.90769	-0.00037963	-0.14485	-6.0582E-05	418.2393227819257	64.919	0.59406	64.919	64.75	65.344	0					29	21	2	0	0	0	0.40232	1	14857	14857		11.631	7.2252	1	200000			14415	3192	9487	9600	19588	19588					0.08177651839832834
NTFDFIKVLR	10	Unmodified	_NTFDFIKVLR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.2391662597656	3	418.239796	1251.69756	0.27544	0.0001152	-0.57302	-0.00023966	-0.29758	-0.00012446	418.23950492781444	64.836	0.46289	64.905	64.771	65.234	0.068916					34	17	3	0	0	0	0.40232	1	14680	14680		11.631	8.0387	1	201940			14416	3192	9487	9600	19589	19589					0.08177651839832834
NTFFDMNIF	9	Unmodified	_NTFFDMNIF_					0	0	0		ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6	ENSG00000091409|ENST00000684293|ITGA6	ENSG00000091409|ENST00000684293|ITGA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2313232421875	2	574.757692	1147.50083	0.55041	0.00031635	-3.537	-0.0020329	-2.9866	-0.0017166	574.7555375948896	82.382	0.48263	82.382	82.142	82.625	0					24	16	2	0	0	0	0.25979	1	20202	20202		11.64	0.81637	1	111090			14417	161	9488	9601	19590	19590					-0.06701896045410649
NTIDQKIVER	10	Unmodified	_NTIDQKIVER_					0	0	0		nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.8944091796875	3	405.894577	1214.6619	0.082074	3.3313E-05	-0.38151	-0.00015485	-0.29943	-0.00012154	405.89438959513853	30.814	0.47768	30.814	30.623	31.101	0					63	22	4	0	0	0	0.25736	2	4527	4527;4571		27.129	7.9849	1	124920			14418	2101	9489	9602	19591;19592	19591					0.0631556959219779
NTIDQKIVER	10	Unmodified	_NTIDQKIVER_					0	0	0		nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8945617675781	3	405.894577	1214.6619	-0.27801	-0.00011284	0.31837	0.00012922	0.040352	1.6379E-05	405.89457819481356	30.818	0.47771	30.892	30.7	31.178	0.073782					72	24	4	0	0	0	0.34675	1	4408	4408		17.572	6.5066	1	96908			14419	2101	9489	9602	19593	19593					0.0631556959219779
NTIGKEEIQQR	11	Unmodified	_NTIGKEEIQQR_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.23675537109375	3	439.237002	1314.68918	-0.068508	-3.0091E-05	-0.33457	-0.00014696	-0.40308	-0.00017705	439.23683953077585	24.741	0.42864	24.741	24.6	25.028	0					61	30	4	0	0	0	0.4042	1	2768	2768		3.3557	1.103	1	67569			14420	5313	9490	9603	19594	19594					0.04442053132561341
NTIGKEEIQQR	11	Unmodified	_NTIGKEEIQQR_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2367248535156	3	439.237002	1314.68918	-0.1571	-6.9003E-05	-0.038588	-1.6949E-05	-0.19569	-8.5952E-05	439.23691665217314	24.614	0.38556	24.71	24.542	24.928	0.096073					64	32	3	0	0	0	0.4111	1	2607	2607		1.7824	0.56759	1	66467			14421	5313	9490	9603	19595	19595					0.04442053132561341
NTIRADPAL	9	Unmodified	_NTIRADPAL_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7691955566406	2	485.769448	969.524344	0.091737	4.4563E-05	-0.1037	-5.0375E-05	-0.011965	-5.8124E-06	485.7693512961892	38.037	0.72834	38.037	37.811	38.539	0					53	24	3	0	0	0	0.14444	2	6686	6686;6738		24.991	4.5764	1	143620			14422	4696	9491	9604	19596;19597	19596					0.03836285783404492
NTIRADPAL	9	Unmodified	_NTIRADPAL_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7689514160156	2	485.769448	969.524344	0.10526	5.1131E-05	0.055639	2.7028E-05	0.1609	7.8158E-05	485.7694487528956	37.931	0.78905	38.016	37.772	38.561	0.084476					54	28	3	0	0	0	0.15482	1	6527	6527		23.79	3.3752	1	97883			14423	4696	9491	9604	19598	19598					0.03836285783404492
NTIVWRRF	8	Unmodified	_NTIVWRRF_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|143|3|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|143|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3090209960938	2	546.309075	1090.6036	-0.053553	-2.9256E-05	-0.56782	-0.0003102	-0.62137	-0.00033946	546.3085207649441	31.352	0.45455	31.426	31.303	31.757	0.073782					29	21	2	0	0	0	0.5411	1	4619	4619		0.6015	0.076735	1	17482	+		14424	12712	9492	9605	19599	19599					0.0619197752821492
NTLSLCPR	8	Unmodified	_NTLSLCPR_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538930.5_1_16:57075247-57096263:+|nuORF;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.78131103515625	2	452.23947	902.464386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.005	1	83.005	82.505	83.505	0								0	0	0	0.38822	1	20378	20378		10.824	2.2306	1				14425	3033	9493	9606	19600	19600					0.009252718485413425
NTNDVETAR	9	Unmodified	_NTNDVETAR_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.24114990234375	2	510.241252	1018.46795	-0.36794	-0.00018774	0.20128	0.0001027	-0.16666	-8.5035E-05	510.2412657688322	18.491	0.30293	18.491	18.346	18.649	0					72	33	3	0	0	0	0.23113	2	1145	1116;1145		14.957	7.8554	1	43008			14426	4256	9494	9607	19601;19602	19602					-0.04054386843904467
NTNIPIGNK	9	Unmodified	_NTNIPIGNK_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.24322509765625	2	485.769448	969.524344	-0.34972	-0.00016988	1.0055	0.00048843	0.65575	0.00031854	485.7701099092314	31.774	0.26046	31.774	31.676	31.937	0					15	10	2	0	0	0	0.25875	1	4802	4802		1.8442	0	1	19589			14427	1905	9495	9608	19603	19603					0.03836285783438598
NTPAFFAER	9	Unmodified	_NTPAFFAER_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7615966796875	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.673	1	46.673	46.173	47.173	0								0	0	0	0.24291	1	9308	9308		10.8	4.0763	1				14428	2179	9496	9609	19604	19604					-0.015000007336311683
NTQFTPLI	8	Unmodified	_NTQFTPLI_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.25537109375	2	467.255643	932.496732	0.31262	0.00014607	-0.26576	-0.00012418	0.046865	2.1898E-05	467.2554152642763	61.25	0.38651	61.25	61.002	61.389	0					21	13	2	0	0	0	0.4772	1	13713	13713		15.847	0	1	88266	+		14429	8223	9497	9610	19605	19605					0.027783825231949777
NTQFTPLI	8	Unmodified	_NTQFTPLI_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	467.255643	932.496732	0.31262	0.00014607	-0.26576	-0.00012418	0.046865	2.1898E-05	467.2554152642763	61.25	0.38651	61.25	61.002	61.389	0	0.020315	0.00013945	NaN	15.847	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88266	+		14430	8223	9497	9610							0.027783825231949777
NTQFTPLI	8	Unmodified	_NTQFTPLI_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	467.255643	932.496732	0.040266	1.8815E-05	-0.54979	-0.00025689	-0.50952	-0.00023808	467.255496650208	61.136	0.38736	61.21	60.973	61.36	0.073418	-0.020315	-0.00012598	NaN	15.847	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64196	+		14431	8223	9497	9610							0.027783825231949777
NTQGSAPPLC	10	Unmodified	_NTQGSAPPLC_					0	0	0			REV__ENSG00000099331|ENST00000682292|MYO9B	REV__ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.74365234375	2	494.231842	986.44913	-0.012603	-6.229E-06	-0.031816	-1.5724E-05	-0.044419	-2.1953E-05	494.23171719697893	29.662	0.79346	29.662	29.376	30.169	0					68	38	2	0	0	0	0.31829	1	4326	4326		1.8442	1.0506	1	210690	+		14432	8356	9498	9611	19606	19606					-0.04463639739310565
NTVDEVYVSR	10	Unmodified	_NTVDEVYVSR_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.29345703125	2	591.293485	1180.57242	0.39236	0.000232	-0.03434	-2.0305E-05	0.35802	0.0002117	591.2933603617219	38.178	0.80264	38.178	37.96	38.763	0					76	27	4	0	0	0	3.4462E-05	2	6727	6727;6779		122.57	74.976	1	429370			14433	4402	9499	9612	19607;19608	19607					-0.01064685087203543
NTVDEVYVSR	10	Unmodified	_NTVDEVYVSR_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.2935791015625	2	591.293485	1180.57242	0.43139	0.00025508	-0.041818	-2.4727E-05	0.38957	0.00023035	591.2934000350945	38.098	0.54884	38.184	37.986	38.535	0.085945					60	20	4	0	0	0	4.2864E-05	2	6613	6571;6613		116.75	83.3	1	324320			14434	4402	9499	9612	19609;19610	19610					-0.01064685087203543
NTVHDIVNR	9	Unmodified	_NTVHDIVNR_					0	0	0		ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ENSG00000119203|ENST00000238112|CPSF3	ASAP2-CPSF3|2|fusion	ASAP2-CPSF3|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2835083007812	2	534.283254	1066.55196	-0.1221	-6.5235E-05	0.21909	0.00011705	0.09699	5.182E-05	534.2833564914125	26.321	0.42392	26.321	26.192	26.616	0					59	33	2	0	0	0	0.31086	1	3231	3231		5.2969	0.76802	1	60267			14435	56	9500	9613	19611	19611					0.021341890436588073
NTVHDIVNR	9	Unmodified	_NTVHDIVNR_					0	0	0		ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ENSG00000119203|ENST00000238112|CPSF3	ASAP2-CPSF3|2|fusion	ASAP2-CPSF3|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2830810546875	2	534.283254	1066.55196	0.13113	7.006E-05	0.17234	9.2081E-05	0.30347	0.00016214	534.283341341066	26.218	0.33291	26.31	26.187	26.52	0.091507					66	29	3	0	0	0	0.31086	1	3064	3064		5.2969	2.5617	1	53229			14436	56	9500	9613	19612	19612					0.021341890436588073
NTVVIGQGAK	10	Unmodified	_NTVVIGQGAK_					0	0	0		tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.25274658203125	2	493.785099	985.555644	-0.14777	-7.2968E-05	0.44789	0.00022116	0.30012	0.00014819	493.78530743350694	40.446	0.41756	40.446	40.341	40.759	0					20	14	2	0	0	0	0.31773	1	7405	7405		4.897	0	1	60576			14437	13614	9501	9614	19613	19613					0.06228858817530636
NVADLTSLR	9	Unmodified	_NVADLTSLR_					0	0	0		ENSG00000100911|ENST00000216802|PSME2;ENST00000558931.5_1_14:24614434-24614695:-|nuORF;ENST00000560592.5_1_14:24614521-24614695:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENSG00000100911|ENST00000216802|PSME2	ENSG00000100911|ENST00000216802|PSME2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.77471923828125	2	494.774731	987.534909	0.47076	0.00023292	-0.12715	-6.2911E-05	0.34361	0.00017001	494.77455405944323	47.952	0.48587	47.952	47.707	48.192	0					31	16	3	0	0	0	0.09187	1	9702	9702		34.222	18.483	1	153240			14438	1222	9502	9615	19614	19614					0.040642684378553895
NVADLTSLR	9	Unmodified	_NVADLTSLR_					0	0	0		ENSG00000100911|ENST00000216802|PSME2;ENST00000558931.5_1_14:24614434-24614695:-|nuORF;ENST00000560592.5_1_14:24614521-24614695:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENSG00000100911|ENST00000216802|PSME2	ENSG00000100911|ENST00000216802|PSME2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.25091552734375	2	494.774731	987.534909	0.65839	0.00032576	-0.57374	-0.00028387	0.08465	4.1883E-05	494.77437908365704	47.842	0.40802	47.922	47.726	48.134	0.080032					28	14	3	0	0	0	0.24277	1	9489	9489		14.405	5.0223	1	124330			14439	1222	9502	9615	19615	19615					0.040642684378553895
NVADLVVILK	10	Unmodified	_NVADLVVILK_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.3424682617188	2	542.342249	1082.66995	0.47436	0.00025727	-0.29981	-0.0001626	0.17455	9.4666E-05	542.3418145635915	71.09	0.3027	71.09	70.937	71.239	0					16	9	2	0	0	0	0.29041	1	16737	16737		27.223	19.614	1	54041			14440	3174	9503	9616	19616	19616					0.1319174857960661
NVADLVVILK	10	Unmodified	_NVADLVVILK_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.342249	1082.66995	0.65105	0.00035309	-0.4287	-0.0002325	0.22235	0.00012059	542.3418405223422	71.028	0.25028	71.087	70.933	71.183	0.058578	-0.0014751	-2.8063E-05	NaN	27.223	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62422			14441	3174	9503	9616							0.1319174857960661
NVAPYDPHF	9	Unmodified	_NVAPYDPHF_					0	0	0		ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2486572265625	2	530.248349	1058.48214	0.20566	0.00010905	0.39267	0.00020821	0.59833	0.00031726	530.2485771559568	50.323	0.51989	50.323	50.105	50.624	0					41	18	3	0	0	0	0.15911	1	10404	10404		32.305	15.193	1	245640			14442	3021	9504	9617	19617	19617					-0.04475689624973711
NVAPYDPHF	9	Unmodified	_NVAPYDPHF_					0	0	0		ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2484130859375	2	530.248349	1058.48214	0.3423	0.0001815	-0.22698	-0.00012036	0.11532	6.1147E-05	530.248332234219	50.242	0.45341	50.315	50.097	50.551	0.07312					36	15	3	0	0	0	0.15911	1	10254	10254		32.305	15.193	1	196450			14443	3021	9504	9617	19618	19618					-0.04475689624973711
NVCSCHLPTF	10	Unmodified	_NVCSCHLPTF_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|194|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|194|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|194|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8055419921875	2	560.749344	1119.48414	0.52466	0.0002942	-0.031273	-1.7536E-05	0.49339	0.00027667	560.7490402115623	82.679	0.86483	82.679	82.364	83.228	0					78	29	4	0	0	0	0.31616	1	20422	20422		10.074	1.4806	1	375400			14444	7404	9505	9618	19619	19619					-0.07082720203038662
NVDEGIYQL	9	Unmodified	_NVDEGIYQL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7586059570312	2	525.758746	1049.50294	0.49512	0.00026032	-0.43127	-0.00022675	0.063851	3.357E-05	525.7582351593479	64.16	0.60318	64.16	63.998	64.601	0					39	20	3	0	0	0	0.026209	1	14642	14642		53.833	11.993	1	176920			14445	1963	9506	9619	19620	19620					-0.019831440359666885
NVDEGIYQL	9	Unmodified	_NVDEGIYQL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2820434570312	2	525.758746	1049.50294	0.32247	0.00016954	0.32341	0.00017003	0.64587	0.00033957	525.7585484284813	64.085	0.58957	64.157	63.999	64.589	0.071022					42	20	3	0	0	0	0.20294	1	14450	14450		24.991	0	1	159530			14446	1963	9506	9619	19621	19621					-0.019831440359666885
NVDPDNVVL	9	Unmodified	_NVDPDNVVL_					0	0	0		ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7533874511719	2	492.753464	983.492375	0.5171	0.0002548	1.0574	0.00052104	1.5745	0.00077585	492.7543454929162	60.666	1.1487	60.666	60.069	61.218	0					96	41	4	0	0	0	0.032194	3	13553	13537;13553;13596		49.554	17.437	1	455150			14447	1971	9507	9620	19622;19623;19624	19623					-3.126690376120678E-05
NVDPDNVVL	9	Unmodified	_NVDPDNVVL_					0	0	0		ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.75360107421875	2	492.753464	983.492375	0.26099	0.00012861	1.0737	0.00052907	1.3347	0.00065767	492.7544562330204	60.549	1.1688	60.622	60.066	61.235	0.073418					77	40	3	0	0	0	0.020768	3	13376	13376;13425;13440		57.722	26.454	1	464130			14448	1971	9507	9620	19625;19626;19627	19625					-3.126690376120678E-05
NVDPDSVVL	9	Unmodified	_NVDPDSVVL_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2478332519531	2	479.248015	956.481476	0.12898	6.1812E-05	-0.13429	-6.4357E-05	-0.0053113	-2.5454E-06	479.24787005369683	62.467	0.77132	62.467	62.227	62.999	0					62	27	3	0	0	0	0.010235	2	14097	14097;14144		66.457	42.214	1	1086800			14449	1139	9508	9621	19628;19629	19628					0.0014947093535511158
NVDPDSVVL	9	Unmodified	_NVDPDSVVL_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2480773925781	2	479.248015	956.481476	0.079327	3.8017E-05	0.10178	4.8777E-05	0.1811	8.6794E-05	479.2479515122999	62.366	0.671	62.439	62.235	62.906	0.072701					47	23	3	0	0	0	0.10543	3	13933	13933;13989;14044		31.268	15.421	1	654820			14450	1139	9508	9621	19630;19631;19632	19630					0.0014947093535511158
NVEEADAAM	9	Oxidation (M)	_NVEEADAAM(Oxidation (M))_		NVEEADAAM(1)		NVEEADAAM(100)	0	0	1		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.1974792480469	2	483.197664	964.380776	-0.4348	-0.00021009	0.36123	0.00017455	-0.073565	-3.5546E-05	483.1977528469333	26.735	0.91923	26.735	26.392	27.312	0					141	63	3	0	0	0	0.0042703	4	3348	3309;3348;3387;3401		99.755	61.781	1	231280			14451	4717	9509	9622	19633;19634;19635;19636	19634		279			-0.10283929109834844
NVEEADAAM	9	Oxidation (M)	_NVEEADAAM(Oxidation (M))_		NVEEADAAM(1)		NVEEADAAM(46)	0	0	1		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.19744873046875	2	483.197664	964.380776	-0.39928	-0.00019293	0.020646	9.9763E-06	-0.37864	-0.00018296	483.1976162540404	29.336	1.5223	29.336	28.881	30.404	0					135	80	2	0	0	0	0.03918	2	4063	4063;4104		45.7	27.553	1	63370			14452	4717	9509	9622	19637;19638	19637		279			-0.10283929109834844
NVEEADAAM	9	Oxidation (M)	_NVEEADAAM(Oxidation (M))_		NVEEADAAM(1)		NVEEADAAM(100)	0	0	1		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.197509765625	2	483.197664	964.380776	-0.35261	-0.00017038	0.46541	0.00022489	0.1128	5.4505E-05	483.1978220984023	26.555	0.91922	26.642	26.074	26.993	0.086699					153	74	3	0	0	0	0.0042703	2	3191	3158;3191		99.755	54.056	1	185990			14453	4717	9509	9622	19639;19640	19640		279			-0.10283929109834844
NVEEADAAM	9	Oxidation (M)	_NVEEADAAM(Oxidation (M))_		NVEEADAAM(1)		NVEEADAAM(89)	0	0	1		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.1974792480469	2	483.197664	964.380776	-0.36609	-0.00017689	0.13974	6.7521E-05	-0.22635	-0.00010937	483.1976968802613	29.133	1.3346	29.211	28.912	30.246	0.078289					141	83	2	0	0	0	0.0045417	1	3931	3931		89.401	51.427	1	57230			14454	4717	9509	9622	19641	19641		279			-0.10283929109834844
NVEVLHHT	8	Unmodified	_NVEVLHHT_					0	0	0		ENST00000557815.1_1_15:70343714-70344902:-|nuORF;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726|TLE3;nc|ENSG00000140332|Q04726-4|TLE3	ENST00000557815.1_1_15:70343714-70344902:-|nuORF	ENST00000557815.1_1_15:70343714-70344902:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.748291015625	2	474.748516	947.482479	-0.19136	-9.0849E-05	-0.2628	-0.00012476	-0.45416	-0.00021561	474.74853506357226	34.682	0.91312	34.758	34.466	35.379	0.076248					107	39	5	0	0	0	0.4772	1	5550	5550		15.847	0	1	313620			14455	3007	9510	9623	19642	19642					0.006637300948909797
NVEVNLRSI	9	Unmodified	_NVEVNLRSI_					0	0	0		tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2211303710938	2	522.29583	1042.57711	0.22887	0.00011954	0.39271	0.00020511	0.62158	0.00032465	522.2960037069321	48.405	0.29357	48.405	48.251	48.544	0					14	9	2	0	0	0	0.25644	1	9807	9807		3.9444	0	1	50075			14456	13442	9511	9624	19643	19643					0.057522438462456194
NVFVKVYAL	9	Unmodified	_NVFVKVYAL_					0	0	0			REV__ENST00000437508.6_2_4:154256402-154256516:+|nuORF	REV__ENST00000437508.6_2_4:154256402-154256516:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2022094726562	2	526.810585	1051.60662	0.57613	0.00030351	-0.26248	-0.00013828	0.31365	0.00016524	526.8103973314716	66.627	0.32053	66.693	66.579	66.9	0.065071					17	12	2	0	0	0	0.2446	1	15279	15279		11.64	2.2929	1	129100	+		14457	11870	9512	9625	19644	19644					0.08287807862370755
NVFVKVYAL	9	Unmodified	_NVFVKVYAL_					0	0	0			REV__ENST00000437508.6_2_4:154256402-154256516:+|nuORF	REV__ENST00000437508.6_2_4:154256402-154256516:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	526.810585	1051.60662	0.73049	0.00038483	-0.51094	-0.00026917	0.21955	0.00011566	526.8102211004499	66.679	0.39105	66.679	66.48	66.871	0	-0.0068173	-0.00010134	NaN	11.64	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101970	+		14458	11870	9512	9625							0.08287807862370755
NVGDKKGKI	9	Unmodified	_NVGDKKGKI_					0	0	0		ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT	ENSG00000093010|ENST00000361682|COMT	ENSG00000093010|ENST00000361682|COMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7876281738281	2	479.787641	957.56073	-0.3759	-0.00018035	0.38556	0.00018499	0.009659	4.6343E-06	479.7877144132128	27.023	0.32191	27.11	26.975	27.297	0.0867					36	22	2	0	0	0	0.33978	1	3330	3330		1.4819	0	1	27296			14459	1084	9513	9626	19645	19645					0.08025162680155518
NVGDKKGKI	9	Unmodified	_NVGDKKGKI_					0	0	0		ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT	ENSG00000093010|ENST00000361682|COMT	ENSG00000093010|ENST00000361682|COMT	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	479.787641	957.56073	-0.42265	-0.00020278	0.3247	0.00015579	-0.097946	-4.6993E-05	479.7876104058232	27.168	0.35791	27.168	27.006	27.364	0	0.028957	-3.4562E-05	NaN	1.4819	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16185			14460	1084	9513	9626							0.08025162680155518
NVGDWLIF	8	Unmodified	_NVGDWLIF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2581787109375	2	482.25036	962.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.65	1	28.73	28.23	29.23	0.079241								0	0	0	0.38822	1	3776	3776		0.79363	0	1				14461	3578	9514	9627	19646	19646					0.003423998687708263
NVIAIYEVL	9	Unmodified	_NVIAIYEVL_					0	0	0		ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	ENSG00000171634|ENST00000306378|BPTF	ENSG00000171634|ENST00000306378|BPTF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7842407226562	2	517.30005	1032.58555	0.36497	0.0001888	0.071212	3.6838E-05	0.43618	0.00022564	517.3000463255487	86.009	0.39982	86.009	85.806	86.205	0					23	15	2	0	0	0	0.2418	1	21321	21321		13.906	3.8321	1	179640			14462	4453	9515	9628	19647	19647					0.07055797762859584
NVIAIYEVL	9	Unmodified	_NVIAIYEVL_					0	0	0		ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	ENSG00000171634|ENST00000306378|BPTF	ENSG00000171634|ENST00000306378|BPTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7845458984375	2	517.30005	1032.58555	0.48355	0.00025014	-0.42023	-0.00021739	0.063323	3.2757E-05	517.2997666997384	85.936	0.36858	85.961	85.796	86.164	0.025169					22	13	2	0	0	0	0.24021	1	21154	21154		13.906	3.8321	1	109800			14463	4453	9515	9628	19648	19648					0.07055797762859584
NVIEAVYNR	9	Unmodified	_NVIEAVYNR_					0	0	0		ENSG00000100614|ENST00000395076|PPM1A;nc|ENSG00000100614|P35813-3|PPM1A	ENSG00000100614|ENST00000395076|PPM1A	ENSG00000100614|ENST00000395076|PPM1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2869262695312	2	539.288005	1076.56146	-0.1431	-7.7175E-05	-0.24412	-0.00013165	-0.38723	-0.00020883	539.2878610719051	44.798	0.69437	44.798	44.606	45.301	0					27	24	2	0	0	0	0.24533	1	8767	8767		12.241	3.6474	1	48024			14464	1211	9516	9629	19649	19649					0.02623957329183213
NVIGLLDVF	9	Unmodified	_NVIGLLDVF_					0	0	0		ENST00000482969.5_1_22:50695071-50699655:-|nuORF;ENST00000488504.5_1_22:50695267-50699938:-|nuORF;nc|ENSG00000112062|Q16539-5|MAPK14;nc|ENSG00000156711|O15264-2|MAPK13;nc|ENSG00000112062|Q16539-3|MAPK14;nc|ENSG00000112062|Q16539-4|MAPK14;nc|ENSG00000188130|P53778-2|MAPK12;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14;ENSG00000185386|ENST00000330651|MAPK11;ENSG00000156711|ENST00000211287|MAPK13;ENSG00000188130|ENST00000215659|MAPK12	ENST00000482969.5_1_22:50695071-50699655:-|nuORF	ENST00000482969.5_1_22:50695071-50699655:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.95916748046875	2	495.286943	988.559333	0.68492	0.00033923	-0.59097	-0.0002927	0.093943	4.6529E-05	495.28652970147175	98.764	0.32799	98.764	98.533	98.861	0					34	18	2	0	0	0	0.2094	1	25154	25154		22.736	8.8302	1	202340			14465	1741	9517	9630	19650	19650					0.0645952859136969
NVIGLLDVF	9	Unmodified	_NVIGLLDVF_					0	0	0		ENST00000482969.5_1_22:50695071-50699655:-|nuORF;ENST00000488504.5_1_22:50695267-50699938:-|nuORF;nc|ENSG00000112062|Q16539-5|MAPK14;nc|ENSG00000156711|O15264-2|MAPK13;nc|ENSG00000112062|Q16539-3|MAPK14;nc|ENSG00000112062|Q16539-4|MAPK14;nc|ENSG00000188130|P53778-2|MAPK12;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14;ENSG00000185386|ENST00000330651|MAPK11;ENSG00000156711|ENST00000211287|MAPK13;ENSG00000188130|ENST00000215659|MAPK12	ENST00000482969.5_1_22:50695071-50699655:-|nuORF	ENST00000482969.5_1_22:50695071-50699655:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.9586486816406	2	495.286943	988.559333	0.6532	0.00032352	-0.63575	-0.00031488	0.017441	8.6384E-06	495.2865531105093	98.711	0.23746	98.753	98.52	98.758	0.041931					21	13	2	0	0	0	0.1789	1	24965	24965		22.736	0.98964	1	444960			14466	1741	9517	9630	19651	19651					0.0645952859136969
NVINKVLDF	9	Unmodified	_NVINKVLDF_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7649536132812	2	531.303124	1060.5917	0.2402	0.00012762	0.52629	0.00027962	0.7665	0.00040724	531.303559927487	72.328	0.25394	72.384	72.207	72.461	0.055939					12	8	2	0	0	0	0.25644	1	16938	16938		3.9444	0.3479	1	62319			14467	283	9518	9631	19652	19652					0.06382315994369492
NVINNAILR	9	Unmodified	_NVINNAILR_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.8074951171875	2	513.806365	1025.59818	0.44773	0.00023004	1.2347	0.0006344	1.6824	0.00086445	513.8071801260268	47.261	0.35786	47.344	47.219	47.577	0.083096					19	13	2	0	0	0	0.23216	1	9391	9391		14.838	4.0143	1	59392			14468	4050	9519	9632	19653	19653					0.08640253945759468
NVINNAILR	9	Unmodified	_NVINNAILR_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	513.806365	1025.59818	0.4724	0.00024272	1.9147	0.00098379	2.3871	0.0012265	513.8075142154528	47.362	0.35275	47.362	47.231	47.583	0	0.0088097	0.0002884	NaN	14.838	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105600			14469	4050	9519	9632							0.08640253945759468
NVIRATRPALP	11	Unmodified	_NVIRATRPALP_					0	0	0			REV__ENSG00000181408|ENST00000313135|UTS2R	REV__ENSG00000181408|ENST00000313135|UTS2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.3667602539062	2	604.367121	1206.71969	0.68229	0.00041235	-0.85621	-0.00051747	-0.17393	-0.00010512	604.3665261151659	99.832	0.66259	99.832	99.659	100.32	0					89	35	4	0	0	0	0.40693	1	25555	25555		2.7352	1.0826	1	663140	+		14470	10532	9520	9633	19654	19654					0.12459876308275852
NVIRATRPALP	11	Unmodified	_NVIRATRPALP_					0	0	0			REV__ENSG00000181408|ENST00000313135|UTS2R	REV__ENSG00000181408|ENST00000313135|UTS2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.3675537109375	2	604.367121	1206.71969	0.79696	0.00048166	-0.90846	-0.00054904	-0.1115	-6.7385E-05	604.3664161516286	99.864	0.62991	99.907	99.709	100.34	0.042839					86	38	3	0	0	0	0.40693	2	25310	25310;25341		2.7352	1.2533	1	415260	+		14471	10532	9520	9633	19655;19656	19655					0.12459876308275852
NVISKNRI	8	Unmodified	_NVISKNRI_					0	0	0		tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2874755859375	2	472.287808	942.561064	-0.026579	-1.2553E-05	0.35386	0.00016712	0.32728	0.00015457	472.28784628001887	89.96	1.1157	89.96	89.646	90.762	0					104	44	4	0	0	0	0.54097	1	22631	22631		0.69038	0	1	2505500			14472	13661	9521	9634	19657	19657					0.08748582400005489
NVKYGIVLDA	10	Unmodified	_NVKYGIVLDA_					0	0	0		ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1;ENST00000490659.5_1_10:97583001-97604470:+|nuORF;ENST00000371206.6_1_10:97583001-97605437:+|nuORF;nc|ENSG00000138185|P49961-3|ENTPD1	ENSG00000138185|ENST00000371205|ENTPD1	ENSG00000138185|ENST00000371205|ENTPD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7695922851562	2	546.308406	1090.60226	-0.053553	-2.9256E-05	0.65622	0.0003585	0.60267	0.00032924	546.3085207649441	31.352	0.45455	31.426	31.303	31.757	0.073782					29	21	2	0	0	0	0.31838	1	4551	4551		1.4819	0	1	17482			14473	2901	9522	9635	19658	19658					0.06058298648804339
NVLIIRALLLL	11	Unmodified	_NVLIIRALLLL_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.9335327148438	2	625.931566	1249.84858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.99	1	112	111.5	112.5	0.014595								0	0	0	0.33873	1	28550	28550		1.1933	0.88631	1		+		14474	7995	9523	9636	19659	19659					0.2336483821852653
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.34423828125	2	589.343646	1176.67274	0.2879	0.00016967	-0.86293	-0.00050856	-0.57504	-0.00033889	589.3430235017262	90.919	0.92823	90.954	90.602	91.53	0.035446					83	34	4	0	0	0	0.45794	1	22735	22735		3.2813	0.54611	1	534810	+		14475	8264	9524	9637	19660	19660					0.09147016757151505
NVLRLCCK	8	Unmodified	_NVLRLCCK_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2237243652344	2	474.759515	947.504477	-0.51436	-0.0002442	-0.8257	-0.00039201	-1.3401	-0.00063621	474.75923594376445	22.838	0.32744	22.838	22.684	23.012	0					39	30	2	0	0	0	0.3576	1	2262	2262		0.69038	0	1	28593			14476	5037	9525	9638	19661	19661					0.028624952474615384
NVLRRDLKPQ	10	Unmodified	_NVLRRDLKPQ_					0	0	0		ENST00000442838.2_1_8:123781530-123781986:+|nuORF	ENST00000442838.2_1_8:123781530-123781986:+|nuORF	ENST00000442838.2_1_8:123781530-123781986:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8692626953125	2	619.870028	1237.7255	-0.25025	-0.00015512	-0.5582	-0.00034601	-0.80845	-0.00050113	619.8694370999674	86.96	0.72298	86.96	86.71	87.433	0					78	30	3	0	0	0	0.47318	1	21538	21538		0.40072	0	1	634050			14477	6526	9526	9639	19662	19662					0.11614974819917734
NVLTLSLRSS	10	Unmodified	_NVLTLSLRSS_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.317138671875	2	545.316763	1088.61897	0.68775	0.00037504	0.10642	5.8032E-05	0.79417	0.00043308	545.3166235342397	84.597	2.8839	84.597	83.9	86.784	0					354	131	3	0	0	0	0.44727	1	20880	20880		5.2969	0	1	6479300			14478	3379	9527	9640	19663	19663					0.07820799534761136
NVMDVVVQF	9	Unmodified	_NVMDVVVQF_					0	0	0		ABHD16A|p.A330V|1|0.5|ENSG00000204427|chr6:31689673-31689673|G/A|missense_variant	ABHD16A|p.A330V|1|0.5|ENSG00000204427|chr6:31689673-31689673|G/A|missense_variant	ABHD16A|p.A330V|1|0.5|ENSG00000204427|chr6:31689673-31689673|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.768310546875	2	525.76806	1049.52157	0.1086	5.7097E-05	-0.074994	-3.943E-05	0.033603	1.7667E-05	525.7678278738408	73.324	0.98585	73.376	72.951	73.937	0.052574					69	37	2	0	0	0	0.28472	1	17192	17192		8.7454	0.15213	1	262060			14479	3	9528	9641	19664	19664					-0.0012130566574342083
NVNKRHPF	8	Unmodified	_NVNKRHPF_					0	0	0			REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2789001464844	2	506.277775	1010.541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.686	1	98.686	98.186	99.186	0								0	0	0	0.38822	1	25146	25146		2.3027	0	1		+		14480	9190	9529	9642	19665	19665					0.03614831460038204
NVNKYRKKC	9	Unmodified	_NVNKYRKKC_					0	0	0			REV__nc|ENSG00000153814|Q86VZ6-3|JAZF1	REV__nc|ENSG00000153814|Q86VZ6-3|JAZF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2376708984375	2	576.81895	1151.62335	0.020264	1.1688E-05	-2.6855	-0.001549	-2.6652	-0.0015374	577.3190369231143	34.148	0.17648	34.148	34.029	34.206	0					9	5	2	0	0	0	0.25845	1	5522	5522		2.0598	0.21551	1	10947	+		14481	9697	9530	9643	19666	19666					0.05359985476661677
NVQGPDWHL	9	Unmodified	_NVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.26025390625	2	533.259248	1064.50394	0.66051	0.00035222	0.70071	0.00037366	1.3612	0.00072588	533.2596104653337	54.5	0.65475	54.5	54.239	54.894	0					64	29	3	0	0	0	0.0010793	1	11709	11709		122.18	84.205	1	1174900			14482	2279	9531	9644	19667	19667					-0.025728848763719725
NVQGPDWHL	9	Unmodified	_NVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2598266601562	2	533.259248	1064.50394	0.75651	0.00040342	0.33495	0.00017862	1.0915	0.00058203	533.2594020748328	54.438	0.88883	54.503	54.179	55.068	0.065128					84	42	3	0	0	0	0.0042703	1	11566	11566		99.755	69.119	1	1012100			14483	2279	9531	9644	19668	19668					-0.025728848763719725
NVQVLAALAF	10	Unmodified	_NVQVLAALAF_					0	0	0			REV__ENSG00000187824|ENST00000341871|TMEM220	REV__ENSG00000187824|ENST00000341871|TMEM220	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037109375	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.624	1	80.647	80.147	81.147	0.023605								0	0	0	0.33341	1	19493	19493		7.9102	0.62092	1		+		14484	10749	9532	9645	19669	19669					0.0762661985700106
NVTKDHIM	8	Unmodified	_NVTKDHIM_					0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2445983886719	2	479.244752	956.474951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.613	1	24.709	24.209	25.209	0.096073								0	0	0	0.38822	1	2609	2609		4.3292	1.44	1				14485	5523	9533	9646	19670	19670					-0.005027454970331746
NVTKEEPLM	9	Unmodified	_NVTKEEPLM_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7713012695312	2	530.7708	1059.52705	0.39494	0.00020962	-0.29696	-0.00015762	0.097973	5.2001E-05	530.7705753752626	37.821	0.44943	37.906	37.716	38.165	0.084476					20	15	2	0	0	0	0.24767	1	6509	6509		13.042	3.6593	1	33090			14486	1389	9534	9647	19671	19671					-0.0003362687393746455
NVTWVIVNL	9	Unmodified	_NVTWVIVNL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3057250976562	2	529.305667	1056.59678	0.15682	8.3007E-05	0.38823	0.00020549	0.54505	0.0002885	529.3058333662395	89.627	0.51317	89.627	89.347	89.86	0					49	19	4	0	0	0	0.00041987	1	22360	22360		133.05	40.399	1	448290			14487	1324	9535	9648	19672	19672					0.0707461985698501
NVTWVIVNL	9	Unmodified	_NVTWVIVNL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3060913085938	2	529.305667	1056.59678	0.19865	0.00010515	0.23327	0.00012347	0.43192	0.00022862	529.3057463013329	89.549	0.54386	89.581	89.33	89.874	0.032257					37	20	2	0	0	0	0.0045224	1	22183	22183		90.135	26.174	1	426690			14488	1324	9535	9648	19673	19673					0.0707461985698501
NVVKIGPRGRR	11	Unmodified	_NVVKIGPRGRR_					0	0	0		ENST00000446492.1_1_2:136756287-136756467:+|nuORF	ENST00000446492.1_1_2:136756287-136756467:+|nuORF	ENST00000446492.1_1_2:136756287-136756467:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3914794921875	2	626.391462	1250.76837	-0.2411	-0.00015102	3.4939	0.0021885	3.2528	0.0020375	626.3933987703413	108.26	0.34805	108.26	108.15	108.5	0					97	48	3	0	0	0	0.40578	1	27947	27947		2.9952	0.26005	1	11616000			14489	6545	9536	9649	19674	19674					0.15301789668023957
NVVKPERAN	9	Unmodified	_NVVKPERAN_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7880249023438	2	513.788173	1025.56179	-0.08284	-4.2562E-05	-0.017923	-9.2088E-06	-0.10076	-5.1771E-05	513.7881419629808	30.934	0.40214	30.934	30.779	31.181	0					33	19	3	0	0	0	0.2546	1	4568	4568		12.241	2.8575	1	58290	+		14490	8180	9537	9650	19675	19675					0.05003377049047231
NVWERLLYE	9	Unmodified	_NVWERLLYE_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5574645996094	3	407.880267	1220.61897	-0.12128	-4.947E-05	0.60708	0.00024761	0.48579	0.00019814	407.88065699978335	39.691	0.77237	39.779	39.364	40.137	0.088562					72	30	4	0	0	0	0.25281	1	7081	7081		4.1895	0	1	63131	+		14491	8965	9538	9651	19676	19676					0.017487995347664764
NVYDQDLL	8	Unmodified	_NVYDQDLL_					0	0	0			REV__ENST00000473872.5_1_1:1328774-1333626:-|nuORF	REV__ENST00000473872.5_1_1:1328774-1333626:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7842712402344	2	490.24019	978.465826	0.34553	0.00016939	-1.9547	-0.00095829	-1.6092	-0.00078889	490.2393376114764	62.471	0.65688	62.471	62.285	62.941	0					36	23	3	0	0	0	0.35759	1	14148	14148		11.64	0.81637	1	233880	+		14492	11022	9539	9652	19677	19677					-0.024268155817139814
NVYVGDALL	9	Unmodified	_NVYVGDALL_					0	0	0		nc|ENSG00000133107|Q9UBN4-6|TRPC4;nc|ENSG00000133107|Q9UBN4-4|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4;TRPC4|p.H151Ifs*7|1|0.36|ENSG00000133107|chr13:37746383-37746383|G/-|frameshift_variant;nc|ENSG00000133107|Q9UBN4-7|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2607727050781	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.97	1	75.97	75.47	76.47	0								0	0	0	0.053425	1	18231	18231		47.749	2.0491	1				14493	2615	9540	9653	19678	19678					0.02454365177618456
NWDDYKKQ	8	Unmodified	_NWDDYKKQ_					0	0	0		ENST00000464846.5_1_2:157427687-157435520:+|nuORF;nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	ENST00000464846.5_1_2:157427687-157435520:+|nuORF	ENST00000464846.5_1_2:157427687-157435520:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.76611328125	2	548.756538	1095.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.617	1	31.617	31.117	32.117	0								0	0	0	0.38822	1	4778	4778		2.3027	0	1				14494	1881	9541	9654	19679	19679					-0.04540608458864881
NWIMRLLNCP	10	Unmodified	_NWIMRLLNCP_					0	0	0			REV__nc|ENSG00000181222|P24928|POLR2A	REV__nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.80859375	2	630.323011	1258.63147	0.65946	0.00041568	0.79412	0.00050055	1.4536	0.00091623	630.3239422236144	66.642	0.10502	66.707	66.668	66.773	0.065063					6	4	2	0	0	0	0.31643	1	15251	15251		9.3831	2.0939	1	125920	+		14495	10527	9542	9655	19680	19680					0.012497964018166385
NWKELIMCNI	10	Unmodified	_NWKELIMCNI_					0	0	0		nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1	nc|ENSG00000205726|Q15811-4|ITSN1	nc|ENSG00000205726|Q15811-4|ITSN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.3080444335938	2	632.314851	1262.61515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.379	1	74.379	73.879	74.879	0								0	0	0	0.33734	1	17743	17743		3.2813	0	1				14496	5521	9543	9656	19681	19681					-0.00565329554933669
NWLAAEAAL	9	Unmodified	_NWLAAEAAL_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7532043457031	2	479.753267	957.491981	0.059182	2.8393E-05	-0.37212	-0.00017853	-0.31294	-0.00015013	479.75303645926647	53.5	0.26779	53.5	53.335	53.603	0					18	10	2	0	0	0	0.31086	1	11390	11390		5.2969	0.39987	1	86043			14497	5413	9544	9657	19682	19682					0.011534983804040166
NWNCMQCL	8	Unmodified	_NWNCMQCL_					0	0	0		nc|ENSG00000105855|P26012-2|ITGB8;ENSG00000105855|ENST00000222573|ITGB8	nc|ENSG00000105855|P26012-2|ITGB8	nc|ENSG00000105855|P26012-2|ITGB8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.19573974609375	2	506.19589	1010.37723	0.46026	0.00023298	-0.58855	-0.00029792	-0.12829	-6.494E-05	506.1955088952097	54.096	0.59972	54.161	53.866	54.466	0.065132					80	22	5	0	0	0	0.53858	1	11478	11478		2.3027	0.4585	1	1007000			14498	1489	9545	9658	19683	19683					-0.12754593689032845
NWPSRPYLF	9	Unmodified	_NWPSRPYLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.301025390625	2	590.300916	1178.58728	0.79177	0.00046738	-0.48098	-0.00028392	0.31079	0.00018346	590.300555815106	65.807	1.0077	65.807	65.472	66.48	0					82	36	3	0	0	0	0.034936	1	15099	15099		47.594	28.337	1	693440			14499	2405	9546	9659	19684	19684					0.005128515714659443
NWPSRPYLF	9	Unmodified	_NWPSRPYLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3010864257812	2	590.300916	1178.58728	0.66452	0.00039227	-0.4072	-0.00024037	0.25733	0.0001519	590.3006281861611	65.781	1.0375	65.847	65.522	66.56	0.066872					96	38	5	0	0	0	0.026809	2	14977	14977;15031		53.404	28.005	1	941220			14500	2405	9546	9659	19685;19686	19685					0.005128515714659443
NWSLWMQHL	9	Unmodified	_NWSLWMQHL_					0	0	0			REV__nc|ENSG00000105355|O60664-2|PLIN3	REV__nc|ENSG00000105355|O60664-2|PLIN3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.3170776367188	2	607.792401	1213.57025	0.91449	0.00055582	1.5527	0.00094369	2.4671	0.0014995	607.7933405153406	65.775	0.17514	65.775	65.704	65.879	0					8	5	2	0	0	0	0.25281	1	15111	15111		3.5965	0	1	167300	+		14501	8536	9547	9660	19687	19687					-0.02799392305996662
NWSLWMQHL	9	Unmodified	_NWSLWMQHL_					0	0	0			REV__nc|ENSG00000105355|O60664-2|PLIN3	REV__nc|ENSG00000105355|O60664-2|PLIN3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	607.792401	1213.57025	0.81576	0.00049581	5.3436	0.0032478	6.1594	0.0037436	608.296735450838	65.668	0.27453	65.735	65.543	65.818	0.066872	-0.02026	0.003407	NaN	3.5965	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94703	+		14502	8536	9547	9660							-0.02799392305996662
NWSSFVDNTF	10	Unmodified	_NWSSFVDNTF_					0	0	0		nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.76904296875	2	608.767103	1215.51965	0.94983	0.00057822	0.88541	0.00053901	1.8352	0.0011172	608.7676880120968	80.373	0.47654	80.373	80.197	80.674	0					34	16	3	0	0	0	0.0073827	1	19590	19590		78.61	62.461	1	207720			14503	582	9548	9661	19688	19688					-0.07948643150007229
NWSSFVDNTF	10	Unmodified	_NWSSFVDNTF_					0	0	0		nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.7683715820312	2	608.767103	1215.51965	0.89206	0.00054306	0.34025	0.00020713	1.2323	0.00075019	608.7672814957924	80.366	0.48925	80.389	80.219	80.708	0.023613					44	17	4	0	0	0	0.019055	1	19423	19423		68.76	52.611	1	203090			14504	582	9548	9661	19689	19689					-0.07948643150007229
NWTFRLTI	8	Unmodified	_NWTFRLTI_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7900390625	2	525.790184	1049.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.904	1	84.927	84.427	85.427	0.023125								0	0	0	0.38138	1	20796	20796		25.399	4.9457	1		+		14505	8473	9549	9662	19690	19690					0.04301466542756316
NWTTAAPLLL	10	Unmodified	_NWTTAAPLLL_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.3116455078125	2	550.310949	1098.60735	0.25098	0.00013812	0.28607	0.00015743	0.53704	0.00029554	550.3112215699703	87.022	0.44261	87.022	86.932	87.374	0					29	18	2	0	0	0	0.20801	1	21617	21617		32.786	0	1	281460			14506	2661	9550	9663	19691	19691					0.06198602511426543
NWTTAAPLLL	10	Unmodified	_NWTTAAPLLL_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.3113403320312	2	550.310949	1098.60735	0.27611	0.00015195	0.032104	1.7667E-05	0.30821	0.00016961	550.3112525278507	87.004	0.37674	87.031	86.906	87.283	0.027573					31	16	3	0	0	0	0.20801	2	21441	21441;21488		32.786	3.1246	1	233570			14507	2661	9550	9663	19692;19693	19692					0.06198602511426543
NWVASGLPGG	10	Unmodified	_NWVASGLPGG_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2588195800781	2	479.243067	956.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.828	1	22.828	22.328	23.328	0								0	0	0	0.33648	1	2241	2241		4.3292	1.0479	1		+		14508	8079	9551	9664	19694	19694					-0.008396722793804656
NWVGEMYL	8	Unmodified	_NWVGEMYL_					0	0	0		ENST00000437916.2_1_2:45148822-45149500:-|nuORF	ENST00000437916.2_1_2:45148822-45149500:-|nuORF	ENST00000437916.2_1_2:45148822-45149500:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.73638916015625	2	506.233853	1010.45315	0.32249	0.00016326	0.34739	0.00017586	0.66988	0.00033912	506.23363066893995	53.538	1.9046	53.538	52.616	54.52	0					134	73	3	0	0	0	0.52924	1	11320	11320		8.5933	0	1	414180			14509	6512	9552	9665	19695	19695					-0.0516555024560148
NYAAALETF	9	Unmodified	_NYAAALETF_					0	0	0		nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF	nc|ENSG00000165416|Q9Y2Z0|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2426452636719	2	500.242732	998.470912	0.39675	0.00019847	-0.63807	-0.00031919	-0.24132	-0.00012072	500.2421129820297	68.08	0.58656	68.08	67.882	68.469	0					49	20	3	0	0	0	0.0040275	2	15808	15808;15856		103.35	65.38	1	307780			14510	4083	9553	9666	19696;19697	19696					-0.028385117190964593
NYAAALETF	9	Unmodified	_NYAAALETF_					0	0	0		nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF	nc|ENSG00000165416|Q9Y2Z0|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2422790527344	2	500.242732	998.470912	0.52961	0.00026493	-0.7369	-0.00036863	-0.20729	-0.00010369	500.2420495297535	68.09	0.57607	68.153	67.904	68.48	0.063507					46	21	3	0	0	0	0.017478	2	15642	15642;15690		60.074	36.053	1	422760			14511	4083	9553	9666	19698;19699	19698					-0.028385117190964593
NYAAQPDKD	9	Unmodified	_NYAAQPDKD_					0	0	0		ENSG00000125249|ENST00000245304|RAP2A	ENSG00000125249|ENST00000245304|RAP2A	ENSG00000125249|ENST00000245304|RAP2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.3181457519531	2	511.232896	1020.45124	0.37375	0.00019107	1.8448	0.00094314	2.2186	0.0011342	511.23375146951895	68.093	0.21815	68.093	68.021	68.239	0					11	7	2	0	0	0	0.24101	1	15830	15830		15.248	3.6082	1	47958			14512	2285	9554	9667	19700	19700					-0.05816887729861264
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3	nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2783813476562	2	540.277638	1078.54072	0.23602	0.00012752	-1.8892	-0.0010207	-1.6531	-0.00089316	540.2764533774415	50.093	0.55398	50.093	49.935	50.489	0					33	19	2	0	0	0	0.004637	1	10355	10355		85.764	34.135	1	265070			14513	393	9555	9668	19701	19701					0.004593669495079666
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3	nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.278564453125	2	540.277638	1078.54072	0.39596	0.00021393	-0.060595	-3.2738E-05	0.33537	0.00018119	540.277531043829	50.065	0.33523	50.138	49.956	50.291	0.07312					17	11	2	0	0	0	0.0094895	3	10197	10197;10221;10241		68.76	25.925	1	229250			14514	393	9555	9668	19702;19703;19704	19702					0.004593669495079666
NYADSVKGRF	10	Unmodified	_NYADSVKGRF_					0	0	0		ENSG00000259680|ENST00000569103|IGHV3OR16-17;nc|ENSG00000211941|P01762|IGHV3-11	ENSG00000259680|ENST00000569103|IGHV3OR16-17	ENSG00000259680|ENST00000569103|IGHV3OR16-17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2754516601562	2	578.790912	1155.56727	0.46213	0.00026748	-1.3981	-0.00080921	-0.93597	-0.00054173	579.2902263525889	94.085	0.73438	94.124	93.983	94.717	0.038086					47	32	2	0	0	0	0.31496	1	23639	23639		13.906	2.2658	1	244860			14515	5710	9556	9669	19705	19705					-0.004289441591254217
NYAELLCVNH	10	Carbamidomethyl (C)	_NYAELLC(Carbamidomethyl (C))VNH_	NYAELLC(1)VNH		NYAELLC(48)VNH		0	1	0			REV__ENSG00000276023|ENST00000617516|DUSP14	REV__ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7905883789062	2	616.790055	1231.56556	0.23338	0.00014395	0.45085	0.00027808	0.68423	0.00042202	616.7902157450881	66.425	1.4486	66.425	66.137	67.586	0					129	55	4	0	0	0	0.085977	1	15335	15335		47.749	11.622	1	1312000	+		14516	11137	9557	9670	19706	19706	19				-0.040963212393990034
NYAENILTL	9	Unmodified	_NYAENILTL_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7770385742188	2	525.776939	1049.53933	0.33989	0.00017871	-0.83172	-0.0004373	-0.49183	-0.00025859	525.777083677319	75.961	0.15555	75.961	75.86	76.015	0					18	14	2	0	0	0	0.02143	1	18208	18208		57.249	19.275	1	748160			14517	2573	9558	9671	19707	19707					0.016537328607682866
NYAENILTL	9	Unmodified	_NYAENILTL_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2772216796875	2	525.776939	1049.53933	0.24757	0.00013017	-0.23508	-0.0001236	0.01249	6.5671E-06	525.7770806692175	75.873	0.22936	75.917	75.736	75.965	0.044037					22	17	2	0	0	0	0.00648	1	18036	18036		78.06	28.127	1	921300			14518	2573	9558	9671	19708	19708					0.016537328607682866
NYAFLYGVF	9	Unmodified	_NYAFLYGVF_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7835693359375	2	547.271293	1092.52803	0.58232	0.00031869	0.27617	0.00015114	0.85849	0.00046983	547.2716668284543	93.37	0.2373	93.37	93.268	93.506	0					14	9	2	0	0	0	0.25979	1	23528	23528		11.64	4.9171	1	39251			14519	3887	9559	9672	19709	19709					-0.01453044442700957
NYAGTASGPNI	11	Unmodified	_NYAGTASGPNI_					0	0	0			REV__ENST00000548259.1_1_12:110930799-110939856:-|nuORF	REV__ENST00000548259.1_1_12:110930799-110939856:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.753662109375	2	532.753995	1063.49344	0.35456	0.00018889	-0.021317	-1.1357E-05	0.33324	0.00017754	532.7538437571174	38.057	1.3414	38.057	37.577	38.918	0					75	47	2	0	0	0	0.36299	1	6662	6662		10.8	4.0763	1	42755	+		14520	8682	9560	9673	19710	19710					-0.03576912321477721
NYAGTASGPNI	11	Unmodified	_NYAGTASGPNI_					0	0	0			REV__ENST00000548259.1_1_12:110930799-110939856:-|nuORF	REV__ENST00000548259.1_1_12:110930799-110939856:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.298095703125	2	532.753995	1063.49344	0.48733	0.00025963	-0.12421	-6.6171E-05	0.36313	0.00019346	532.7538364556902	37.999	1.11	38.083	37.57	38.68	0.084476					69	39	2	0	0	0	0.30991	1	6526	6526		10.8	4.0763	1	42703	+		14521	8682	9560	9673	19711	19711					-0.03576912321477721
NYAHTVEPGEL	11	Unmodified	_NYAHTVEPGEL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.294677734375	2	615.293485	1228.57242	0.02786	1.7142E-05	0.76897	0.00047314	0.79683	0.00049028	615.2939587482424	75.509	1.1192	75.509	74.555	75.674	0					74	42	2	0	0	0	0.38613	1	18139	18139		9.3831	2.66	1	616330	+		14522	12362;7964	9561	9674	19712	19712					-0.032726850871767965
NYAHTVEPGEL	11	Unmodified	_NYAHTVEPGEL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.8533935546875	2	615.293485	1228.57242	0.054812	3.3725E-05	0.273	0.00016798	0.32782	0.0002017	615.2936298987504	74.789	1.0479	74.838	74.042	75.09	0.048546					53	37	2	0	0	0	0.29854	1	17715	17715		20.415	4.2654	1	317060	+		14523	12362;7964	9561	9674	19713	19713					-0.032726850871767965
NYAPAFTML	9	Oxidation (M)	_NYAPAFTM(Oxidation (M))L_		NYAPAFTM(1)L		NYAPAFTM(48)L	0	0	1		ENST00000508181.5_1_5:94842662-94852339:-|nuORF;ENSG00000198677|ENST00000358746|SKIC3	ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENST00000508181.5_1_5:94842662-94852339:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.246337890625	2	522.24696	1042.47937	0.52682	0.00027513	-1.5329	-0.00080055	-1.0061	-0.00052542	522.2461888790375	70.227	1.0394	70.227	69.608	70.647	0					65	37	2	0	0	0	0.03472	2	16456	16403;16456		47.749	26.916	1	213670			14524	5387	9562	9675	19714;19715	19715		306			-0.040172810741296416
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.78759765625	2	548.792924	1095.57129	0.59989	0.00032921	-1.3762	-0.00075524	-0.7763	-0.00042603	548.7924369979025	55.103	0.72704	55.103	54.798	55.525	0					54	26	3	0	0	0	0.2229	1	11836	11836		19.257	6.7254	1	461150			14525	2784	9563	9676	19716	19716					0.027331453345595946
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7927856445312	2	548.792924	1095.57129	0.60803	0.00033368	-0.17116	-9.3933E-05	0.43687	0.00023975	548.7928110743901	55.126	0.39465	55.191	55.007	55.402	0.065128					36	15	3	0	0	0	0.0043658	2	11745	11745;11790		96.111	72.09	1	304440			14526	2784	9563	9676	19717;19718	19717					0.027331453345595946
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.28515625	2	549.284931	1096.55531	-0.017442	-9.5805E-06	0.41734	0.00022924	0.3999	0.00021966	549.2850661079788	58.606	0.26246	58.606	58.445	58.708	0					16	8	2	0	0	0	0.002259	1	12925	12925		114.19	75.572	1	367820			14527	3524	9564	9677	19719	19719					0.010894390976773138
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2850952148438	2	549.284931	1096.55531	0.29102	0.00015986	0.28142	0.00015458	0.57244	0.00031443	549.2849820708986	58.478	0.32517	58.548	58.366	58.691	0.070477					19	10	2	0	0	0	0.010033	1	12771	12771		67.081	41.06	1	308390			14528	3524	9564	9677	19720	19720					0.010894390976773138
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7723999023438	2	547.772522	1093.53049	-0.08805	-4.8231E-05	-0.0018995	-1.0405E-06	-0.089949	-4.9272E-05	547.7724951496231	29.526	1.2455	29.526	29.252	30.497	0					128	63	3	0	0	0	0.065576	3	4174	4125;4174;4215		39.95	24.103	1	155640			14529	2217	9565	9678	19721;19722;19723	19722					-0.012531959850548446
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7726440429688	2	547.772522	1093.53049	-0.04315	-2.3636E-05	0.17908	9.8095E-05	0.13593	7.4459E-05	547.7725307601469	29.436	0.90858	29.514	29.289	30.197	0.078287					125	53	4	0	0	0	0.017478	4	4015	3973;4015;4053;4090		60.074	45.236	1	266890			14530	2217	9565	9678	19724;19725;19726;19727	19725					-0.012531959850548446
NYASTFTWW	9	Unmodified	_NYASTFTWW_					0	0	0		nc|ENSG00000052802|Q15800-2|MSMO1;ENSG00000052802|ENST00000261507|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.2615356445312	2	588.261456	1174.50836	0.23763	0.00013979	0.22463	0.00013214	0.46226	0.00027193	588.2615120017304	86.601	1.1427	86.601	86.356	87.498	0					76	34	4	0	0	0	4.7247999999999997E-32	1	21473	21473		240.48	202.51	1	2755800			14531	593	9566	9679	19728	19728					-0.07191420453455066
NYASTFTWW	9	Unmodified	_NYASTFTWW_					0	0	0		nc|ENSG00000052802|Q15800-2|MSMO1;ENSG00000052802|ENST00000261507|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.2613525390625	2	588.261456	1174.50836	0.5054	0.00029731	-0.062236	-3.6611E-05	0.44316	0.0002607	588.2612633752045	86.594	1.0702	86.622	86.329	87.399	0.027573					75	26	4	0	0	0	7.6155E-09	2	21299	21299;21342		163.04	139.02	1	2539600			14532	593	9566	9679	19729;19730	19729					-0.07191420453455066
NYATQQEKGST	11	Unmodified	_NYATQQEKGST_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.5259704589844	3	409.526441	1225.55749	0.017219	7.0516E-06	-0.56946	-0.00023321	-0.55224	-0.00022616	409.52555590636445	69.142	1.0294	69.204	68.968	69.997	0.062126					110	37	4	0	0	0	0.33915	1	15993	15993		13.535	2.4697	1	963100	+		14533	9665	9567	9680	19731	19731					-0.046261769551847465
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.8007202148438	2	525.800749	1049.58694	0.15559	8.1812E-05	-0.019494	-1.025E-05	0.1361	7.1561E-05	525.8006389113146	52.579	0.86626	52.579	52.368	53.234	0					68	31	4	0	0	0	0.0011298	1	11087	11087		121.35	75.646	1	585920			14534	89	9568	9681	19732	19732					0.06413431851638052
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.8007202148438	2	525.800749	1049.58694	0.19514	0.0001026	-0.051116	-2.6877E-05	0.14402	7.5726E-05	525.8006201519607	52.534	0.61918	52.601	52.376	52.996	0.067173					56	24	3	0	0	0	0.0042454	2	10936	10936;10983		100.71	62.533	1	489620			14535	89	9568	9681	19733;19734	19733					0.06413431851638052
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7929077148438	2	614.792924	1227.57129	0.095701	5.8837E-05	0.008351	5.1341E-06	0.10405	6.3971E-05	614.7932922852286	69.167	6.802	69.167	68.911	75.713	0					674	247	6	0	0	0	2.2448E-09	27	16390	16120;16164;16213;16258;16303;16346;16390;16437;16494;16539;16579;16627;16772;16877;16930;16979;17026;17077;17128;17175;17225;17275;17353;17679;17876;17920;17971		189.49	149.54	1	115420000			14536	2097	9569	9682	19735;19736;19737;19738;19739;19740;19741;19742;19743;19744;19745;19746;19747;19748;19749;19750;19751;19752;19753;19754;19755;19756;19757;19758;19759;19760;19761	19741					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7930297851562	2	614.792924	1227.57129	-0.025182	-1.5482E-05	-0.064757	-3.9812E-05	-0.089939	-5.5294E-05	615.294348531717	76.098	0.38454	76.098	75.998	76.383	0					29	22	2	0	0	0	0.006264	3	18285	18266;18285;18342		101.72	67.32	1	599760			14537	2097	9569	9682	19762;19763;19764	19763					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7928466796875	2	614.792924	1227.57129	-0.07309	-4.4935E-05	0.090118	5.5404E-05	0.017028	1.0469E-05	614.7928244263338	77.699	2.6738	77.699	76.947	79.621	0					171	99	2	0	0	0	0.0043658	8	18906	18592;18646;18906;18970;19036;19128;19192;19263		123.1	95.467	1	549790			14538	2097	9569	9682	19765;19766;19767;19768;19769;19770;19771;19772	19767					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7951049804688	2	614.792924	1227.57129	0.18473	0.00011357	2.2034	0.0013546	2.3881	0.0014682	614.794466894056	83.379	1.2849	83.379	82.957	84.242	0					88	43	3	0	0	0	0.029291	4	20392	20392;20615;20633;20660		67.344	49.209	1	348870			14539	2097	9569	9682	19773;19774;19775;19776	19773					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.2960205078125	2	614.792924	1227.57129	0.35864	0.00022049	2.2455	0.0013805	2.6041	0.001601	614.7945347249696	84.566	1.0186	84.566	84.464	85.482	0					83	43	4	0	0	0	0.010235	10	20841	20841;20852;20877;20926;20943;20991;21041;21052;21099;21127		85.357	63.61	1	412030			14540	2097	9569	9682	19777;19778;19779;19780;19781;19782;19783;19784;19785;19786	19777					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7924194335938	2	614.792924	1227.57129	-0.075042	-4.6135E-05	1.0048	0.00061777	0.92981	0.00057164	614.7932679482326	90.459	1.4638	90.459	90.138	91.602	0					94	55	2	0	0	0	0.017478	2	22585	22585;22713		67.344	53.438	1	219860			14541	2097	9569	9682	19787;19788	19787					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7932739257812	2	614.792924	1227.57129	0.059113	3.6342E-05	0.67343	0.00041402	0.73254	0.00045036	614.7932253650844	99.896	0.61994	99.896	99.817	100.44	0					49	34	2	0	0	0	0.02293	3	25672	25545;25612;25672		67.344	53.438	1	221020			14542	2097	9569	9682	19789;19790;19791	19791					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7927856445312	2	614.792924	1227.57129	-0.0078965	-4.8547E-06	0.52237	0.00032115	0.51447	0.00031629	614.7931013573887	100.96	1.0969	100.96	100.44	101.53	0					104	64	2	0	0	0	0.029291	4	25968	25805;25850;25943;25968		67.344	51.195	1	134190			14543	2097	9569	9682	19792;19793;19794;19795	19795					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7939453125	2	614.792924	1227.57129	-0.068433	-4.2072E-05	0.87572	0.00053839	0.80728	0.00049631	614.7932487980895	101.79	0.74699	101.79	101.23	101.98	0					98	41	3	0	0	0	0.026209	5	26072	26031;26041;26072;26082;26128		60.39	48.088	1	111170			14544	2097	9569	9682	19796;19797;19798;19799;19800	19798					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7933959960938	2	614.792924	1227.57129	-0.36829	-0.00022642	1.2279	0.00075491	0.85961	0.00052848	614.793365737345	105.97	0.61368	105.97	105.77	106.38	0					87	57	3	0	0	0	0.10543	1	27337	27337		42.095	32.711	1	97901			14545	2097	9569	9682	19801	19801					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7930297851562	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.974	1	75.974	75.474	76.474	0								0	0	0	0.0034055	1	18232	18232		101.72	71.497	1				14546	2097	9569	9682	19802	19802					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7933349609375	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102	1	102	101.5	102.5	0								0	0	0	0.059996	1	26155	26155		60.39	46.484	1				14547	2097	9569	9682	19803	19803					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.79345703125	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.13	1	102.13	101.63	102.63	0								0	0	0	0.10158	1	26193	26193		36.044	23.804	1				14548	2097	9569	9682	19804	19804					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.79296875	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.3	1	102.3	101.8	102.8	0								0	0	0	0.10158	1	26247	26247		44.407	35.024	1				14549	2097	9569	9682	19805	19805					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7940063476562	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.54	1	102.54	102.04	103.04	0								0	0	0	0.053425	1	26316	26316		53.576	39.67	1				14550	2097	9569	9682	19806	19806					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7929077148438	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.71	1	102.71	102.21	103.21	0								0	0	0	0.066177	1	26370	26370		57.471	44.94	1				14551	2097	9569	9682	19807	19807					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.793212890625	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.81	1	102.81	102.31	103.31	0								0	0	0	0.053425	1	26400	26400		53.576	39.67	1				14552	2097	9569	9682	19808	19808					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7922973632812	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.88	1	102.88	102.38	103.38	0								0	0	0	0.036979	1	26421	26421		70.716	52.569	1				14553	2097	9569	9682	19809	19809					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7929077148438	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.97	1	102.97	102.47	103.47	0								0	0	0	0.10158	1	26449	26449		36.044	26.661	1				14554	2097	9569	9682	19810	19810					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.3939208984375	2	614.792924	1227.57129	-0.30981	-0.00019047	0.76725	0.0004717	0.45743	0.00028123	614.7934057343848	105.3	0.41786	105.3	105.13	105.55	0					67	43	2	0	0	0	0.063247	1	27081	27081		53.576	34.319	1	110100			14555	2097	9569	9682	19811	19811					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.815673828125	2	614.792924	1227.57129	-0.34142	-0.0002099	1.1699	0.00071925	0.8285	0.00050935	614.7935360854547	105.69	0.39289	105.69	105.39	105.78	0					81	41	3	0	0	0	0.073221	1	27214	27214		50.855	42.262	1	115620			14556	2097	9569	9682	19812	19812					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.79296875	2	614.792924	1227.57129	-0.09892	-6.0815E-05	0.30637	0.00018835	0.20745	0.00012754	614.7935180719636	69.141	6.7585	69.203	68.071	74.83	0.062126					684	254	6	0	0	0	2.2448E-09	24	16394	15940;15984;16030;16072;16122;16166;16212;16250;16296;16342;16394;16437;16670;16719;16767;16820;16932;16984;17032;17079;17127;17379;17436;17488		189.49	149.54	1	132320000			14557	2097	9569	9682	19813;19814;19815;19816;19817;19818;19819;19820;19821;19822;19823;19824;19825;19826;19827;19828;19829;19830;19831;19832;19833;19834;19835;19836	19823					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7930908203125	2	614.792924	1227.57129	0.056051	3.4459E-05	-0.32409	-0.00019925	-0.26804	-0.00016479	614.7927537590136	75.574	0.86814	75.618	74.812	75.68	0.044037					52	31	2	0	0	0	0.0043658	3	17771	17723;17771;17821		123.1	88.694	1	580520			14558	2097	9569	9682	19837;19838;19839	19838					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7936401367188	2	614.792924	1227.57129	0.097142	5.9722E-05	0.82188	0.00050529	0.91902	0.00056501	614.7934413604728	77.335	0.13023	77.369	77.287	77.417	0.034485					11	7	2	0	0	0	0.017478	1	18482	18482		77.984	56.447	1	286080			14559	2097	9569	9682	19840	19840					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.79296875	2	614.792924	1227.57129	-0.019269	-1.1847E-05	0.13986	8.5986E-05	0.12059	7.4139E-05	614.7929526184728	79.167	1.8663	79.194	78.018	79.884	0.026428					99	65	2	0	0	0	0.010235	2	19027	18883;19027		85.357	63.82	1	258320			14560	2097	9569	9682	19841;19842	19842					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7926025390625	2	614.792924	1227.57129	-0.014358	-8.8269E-06	1.6381	0.0010071	1.6237	0.00099826	614.7933053726839	88.726	1.6351	88.759	87.968	89.603	0.032265					101	61	2	0	0	0	0.03918	1	22139	22139		60.39	46.484	1	139570			14561	2097	9569	9682	19843	19843					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7931518554688	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.697	1	75.741	75.241	76.241	0.044037								0	0	0	0.0012647	1	17990	17990		98.807	73.408	1				14562	2097	9569	9682	19844	19844					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7942504882812	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.713	1	75.757	75.257	76.257	0.044037								0	0	0	0.020552	1	17995	17995		81.864	54.235	1				14563	2097	9569	9682	19845	19845					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7930297851562	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.632	1	77.666	77.166	78.166	0.034485								0	0	0	0.0043762	1	18583	18583		97.075	75.328	1				14564	2097	9569	9682	19846	19846					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7931518554688	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.166	1	78.196	77.696	78.696	0.030159								0	0	0	0.04112	1	18746	18746		67.344	51.195	1				14565	2097	9569	9682	19847	19847					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7928466796875	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.347	1	78.377	77.877	78.877	0.030159								0	0	0	0.0043762	1	18801	18801		97.075	75.538	1				14566	2097	9569	9682	19848	19848					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7921752929688	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.583	1	78.613	78.113	79.113	0.030159								0	0	0	0.013252	1	18873	18873		85.357	68.244	1				14567	2097	9569	9682	19849	19849					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7923583984375	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.75	1	78.78	78.28	79.28	0.030159								0	0	0	4.7205E-05	1	18922	18922		109.63	82	1				14568	2097	9569	9682	19850	19850					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7940063476562	2	614.792924	1227.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.782	1	78.813	78.313	79.313	0.030159								0	0	0	0.025248	1	18932	18932		77.984	59.849	1				14569	2097	9569	9682	19851	19851					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.792924	1227.57129	0.17533	0.00010779	0.52988	0.00032577	0.70521	0.00043356	614.7929799857209	99.96	0.48452	100	99.872	100.36	0.042839	0.053047	-0.0001023	NaN	63.563	48	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182780			14570	2097	9569	9682							-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.792924	1227.57129	0.13011	7.9991E-05	0.47132	0.00028976	0.60143	0.00036975	614.7931072655865	101.59	1.0139	101.63	100.95	101.96	0.042656	-0.078401	-0.00025968	NaN	60.39	113	71	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130610			14571	2097	9569	9682							-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.792924	1227.57129	0.0081099	4.9859E-06	0.64886	0.00039891	0.65697	0.0004039	614.7930178625103	105.44	1.1081	105.47	104.63	105.74	0.029732	0.08305	-4.8868E-05	NaN	53.576	201	121	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116810			14572	2097	9569	9682							-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.792924	1227.57129	-0.28516	-0.00017531	0.39425	0.00024238	0.1091	6.7073E-05	614.7931724551238	90.235	0.99991	90.269	90.109	91.109	0.034058	-0.09517	-0.00047723	NaN	67.344	66	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271770			14573	2097	9569	9682							-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.792924	1227.57129	-0.01435	-8.822E-06	0.81016	0.00049808	0.79581	0.00048926	614.7932026241234	106	0.56319	106.03	105.74	106.3	0.029739	0.029752	-0.00024309	NaN	42.095	99	63	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100280			14574	2097	9569	9682							-0.03338854665435065
NYAWVYYHM	9	Oxidation (M)	_NYAWVYYHM(Oxidation (M))_		NYAWVYYHM(1)		NYAWVYYHM(110)	0	0	1		ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5	ENSG00000119922|ENST00000371826|IFIT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7683715820312	2	631.768591	1261.52263	-0.15982	-0.00010097	0.48074	0.00030372	0.32092	0.00020275	631.7688600855929	58.709	1.8252	58.709	58.293	60.119	0					144	67	4	0	0	0	0.0021353	6	13071	12921;12967;13021;13071;13138;13201		114.94	91.795	1	620700			14575	2099;3506	9570	9683	19852;19853;19854;19855;19856;19857	19855		129			-0.09767091296862418
NYAWVYYHM	9	Oxidation (M)	_NYAWVYYHM(Oxidation (M))_		NYAWVYYHM(1)		NYAWVYYHM(50)	0	0	1		ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5	ENSG00000119922|ENST00000371826|IFIT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.76806640625	2	631.768591	1261.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.088	1	58.088	57.588	58.588	0								0	0	0	0.047267	1	12779	12779		49.669	21.182	1				14576	2099;3506	9570	9683	19858	19858		129			-0.09767091296862418
NYAWVYYHM	9	Oxidation (M)	_NYAWVYYHM(Oxidation (M))_		NYAWVYYHM(1)		NYAWVYYHM(44)	0	0	1		ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5	ENSG00000119922|ENST00000371826|IFIT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7695922851562	2	631.768591	1261.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.841	1	59.841	59.341	60.341	0								0	0	0	0.064142	1	13308	13308		44.407	23.953	1				14577	2099;3506	9570	9683	19859	19859		129			-0.09767091296862418
NYAWVYYHM	9	Oxidation (M)	_NYAWVYYHM(Oxidation (M))_		NYAWVYYHM(1)		NYAWVYYHM(54)	0	0	1		ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5	ENSG00000119922|ENST00000371826|IFIT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7691650390625	2	631.768591	1261.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.16	1	60.16	59.66	60.66	0								0	0	0	0.037462	1	13405	13405		53.576	33.122	1				14578	2099;3506	9570	9683	19860	19860		129			-0.09767091296862418
NYAWVYYHM	9	Oxidation (M)	_NYAWVYYHM(Oxidation (M))_		NYAWVYYHM(1)		NYAWVYYHM(130)	0	0	1		ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	ENSG00000119922|ENST00000371826|IFIT2;nc|ENSG00000152778|Q13325-2|IFIT5	ENSG00000119922|ENST00000371826|IFIT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.7687377929688	2	631.768591	1261.52263	0.18831	0.00011897	0.18536	0.0001171	0.37367	0.00023608	631.7686977371751	58.661	1.4126	58.731	58.184	59.597	0.070477					145	52	4	0	0	0	0.00065346	7	12798	12753;12798;12840;12885;12938;12988;13036		129.2	112.26	1	682750			14579	2099;3506	9570	9683	19861;19862;19863;19864;19865;19866;19867	19862		129			-0.09767091296862418
NYAYCQVVRE	10	Unmodified	_NYAYCQVVRE_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.790283203125	2	622.790055	1243.56556	0.2014	0.00012543	0.72773	0.00045322	0.92913	0.00057865	622.7904124872476	64.07	0.64277	64.07	63.793	64.436	0					52	22	3	0	0	0	0.29844	1	14564	14564		22.736	0	1	390740			14580	5133	9571	9684	19868	19868					-0.04648321239415054
NYAYCQVVRE	10	Unmodified	_NYAYCQVVRE_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.31640625	2	622.790055	1243.56556	0.2284	0.00014224	0.33141	0.0002064	0.55981	0.00034864	622.790331862452	67.507	0.90744	67.507	66.761	67.669	0					55	33	2	0	0	0	0.29771	1	15456	15456		22.736	0	1	95164			14581	5133	9571	9684	19869	19869					-0.04648321239415054
NYAYCQVVRE	10	Unmodified	_NYAYCQVVRE_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.788818359375	2	622.790055	1243.56556	0.26257	0.00016353	0.60038	0.00037391	0.86295	0.00053743	622.7903203789073	63.877	0.78642	63.948	63.643	64.43	0.071018					74	26	4	0	0	0	0.24016	2	14363	14363;14396		29.082	0	1	453030			14582	5133	9571	9684	19870;19871	19870					-0.04648321239415054
NYAYCQVVRE	10	Unmodified	_NYAYCQVVRE_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	622.790055	1243.56556	0.54856	0.00034164	0.55782	0.0003474	1.1064	0.00068904	623.2916072847141	67.456	1.042	67.521	66.804	67.846	0.065071	0.007003	0.00018345	NaN	22.736	62	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135530			14583	5133	9571	9684							-0.04648321239415054
NYAYCQVVRE	10	Unmodified	_NYAYCQVVRE_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	622.790055	1243.56556	0.26257	0.00016353	0.60038	0.00037391	0.86295	0.00053743	622.7903203789073	63.877	0.78642	63.948	63.643	64.43	0.071018	-0.060652	-0.00010986	NaN	29.082	74	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453030			14584	5133	9571	9684							-0.04648321239415054
NYCLWEFE	8	Unmodified	_NYCLWEFE_					0	0	0		ENST00000559267.1_1_15:80637357-80637462:-|nuORF	ENST00000559267.1_1_15:80637357-80637462:-|nuORF	ENST00000559267.1_1_15:80637357-80637462:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2925415039062	2	552.228768	1102.44298	0.56881	0.00031411	0.54194	0.00029927	1.1107	0.00061339	552.2288906982245	91.731	0.55618	91.731	91.531	92.088	0					44	20	3	0	0	0	0.35492	1	23047	23047		16.942	3.0362	1	430580			14585	7144	9572	9685	19872	19872					-0.10414157970853921
NYCNLFNYI	9	Unmodified	_NYCNLFNYI_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2637329101562	2	582.263142	1162.51173	0.30334	0.00017662	-0.048128	-2.8023E-05	0.25521	0.0001486	582.2636577707343	89.605	0.6696	89.605	89.347	90.017	0					70	25	4	0	0	0	0.003963	2	22401	22356;22401		103.75	84.491	1	419640			14586	1162	9573	9686	19873;19874	19874					-0.06302493671114462
NYCNLFNYI	9	Unmodified	_NYCNLFNYI_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2634887695312	2	582.263142	1162.51173	0.40891	0.0002381	0.024313	1.4156E-05	0.43323	0.00025225	582.263597996959	89.599	0.57269	89.633	89.386	89.958	0.033386					52	21	3	0	0	0	0.0032694	3	22186	22186;22236;22288		108	80.368	1	243690			14587	1162	9573	9686	19875;19876;19877	19875					-0.06302493671114462
NYDAALRKI	9	Unmodified	_NYDAALRKI_					0	0	0		CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|2|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.29833984375	2	532.298373	1062.58219	0.351	0.00018684	-0.49751	-0.00026482	-0.14651	-7.7985E-05	532.2979626777296	37.975	1.2144	37.975	37.442	38.657	0					53	41	3	0	0	0	0.2094	1	6687	6687		22.736	14.143	1	71052			14588	196	9574	9687	19878	19878					0.05340547708851773
NYDAALRKI	9	Unmodified	_NYDAALRKI_					0	0	0		CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|2|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.298095703125	2	532.298373	1062.58219	0.46039	0.00024506	-0.71808	-0.00038223	-0.25769	-0.00013717	532.2978421742706	37.883	0.96054	37.967	37.472	38.432	0.084476					45	33	3	0	0	0	0.22247	1	6526	6526		20.415	15.659	1	59370			14589	196	9574	9687	19879	19879					0.05340547708851773
NYDEALRLL	9	Unmodified	_NYDEALRLL_					0	0	0		ENST00000595288.5_1_19:7687207-7690948:-|nuORF;ENSG00000076924|ENST00000358368|XAB2	ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENST00000595288.5_1_19:7687207-7690948:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7959594726562	2	553.795663	1105.57677	0.88279	0.00048889	-0.95405	-0.00052835	-0.071255	-3.9461E-05	553.7951585193234	66.189	0.73259	66.189	65.936	66.669	0					62	27	3	0	0	0	0.018907	2	15290	15290;15301		59.052	30.558	1	497310			14590	849	9575	9688	19880;19881	19880					0.028208241263882883
NYDEALRLL	9	Unmodified	_NYDEALRLL_					0	0	0		ENST00000595288.5_1_19:7687207-7690948:-|nuORF;ENSG00000076924|ENST00000358368|XAB2	ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENST00000595288.5_1_19:7687207-7690948:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7960205078125	2	553.795663	1105.57677	0.79592	0.00044078	-0.84687	-0.00046899	-0.050943	-2.8212E-05	553.795291593221	66.154	0.60486	66.221	65.999	66.604	0.066872					55	22	3	0	0	0	0.010542	1	15118	15118		75.571	40.639	1	453510			14591	849	9575	9688	19882	19882					0.028208241263882883
NYDFGPIHM	9	Oxidation (M)	_NYDFGPIHM(Oxidation (M))_		NYDFGPIHM(1)		NYDFGPIHM(61)	0	0	1		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;MTHFD1L-RNF216|1|fusion;MTHFD1L-RNF216|3|fusion;MTHFD1L-RNF216|2|fusion	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2835693359375	2	555.239667	1108.46478	0.50027	0.00027777	0.05396	2.9961E-05	0.55423	0.00030773	555.2397165371547	57.047	1.1543	57.047	56.674	57.829	0					75	41	2	0	0	0	0.015182	1	12436	12436		61.357	34.474	1	158560			14592	427	9576	9689	19883	19883		19			-0.0851135322227492
NYDKVEKLF	9	Unmodified	_NYDKVEKLF_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3048095703125	2	578.305864	1154.59717	0.44331	0.00025637	-0.19721	-0.00011405	0.2461	0.00014232	578.3055476815626	47.201	0.32108	47.201	47.028	47.349	0					18	10	2	0	0	0	0.11816	1	9477	9477		28.495	12.345	1	71829			14593	4650	9577	9690	19884	19884					0.02605994786199517
NYDKVEKLF	9	Unmodified	_NYDKVEKLF_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3060302734375	2	578.305864	1154.59717	0.44155	0.00025535	0.05914	3.4201E-05	0.50069	0.00028955	578.30600162514	47.065	0.34106	47.149	47.007	47.348	0.083092					19	12	2	0	0	0	0.12515	1	9298	9298		27.223	15.729	1	72864			14594	4650	9577	9690	19885	19885					0.02605994786199517
NYDLALKYF	9	Unmodified	_NYDLALKYF_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.8192749023438	2	573.795132	1145.57571	0.50018	0.000287	0.49728	0.00028534	0.99746	0.00057234	573.7952853035	69.594	0.87373	69.594	69.296	70.17	0					66	30	3	0	0	0	0.029591	1	16294	16294		51.415	9.5756	1	2479500			14595	770	9578	9691	19886	19886					0.008746097574658052
NYDLALKYF	9	Unmodified	_NYDLALKYF_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	573.795132	1145.57571	0.28577	0.00016397	0.54206	0.00031103	0.82783	0.00047501	573.7953937338068	69.535	0.90387	69.597	69.335	70.239	0.062126	0.001656	2.1926E-05	NaN	51.415	63	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2257200			14596	770	9578	9691							0.008746097574658052
NYEDYFPEI	9	Unmodified	_NYEDYFPEI_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2559814453125	2	595.256037	1188.49752	0.70668	0.00042066	-0.69754	-0.00041521	0.0091452	5.4438E-06	595.2555049395033	80.095	0.71664	80.095	79.739	80.456	0					52	24	3	0	0	0	0.091044	1	19526	19526		34.402	11.665	1	457480			14597	5017	9579	9692	19887	19887					-0.08918867618422155
NYEDYFPEI	9	Unmodified	_NYEDYFPEI_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.255126953125	2	595.256037	1188.49752	0.38772	0.00023079	-0.34834	-0.00020735	0.03938	2.3441E-05	595.2556870391192	80.019	1.0303	80.046	79.823	80.854	0.026436					79	36	4	0	0	0	0.005983	2	19295	19295;19345		79.596	52.713	1	613730			14598	5017	9579	9692	19888;19889	19888					-0.08918867618422155
NYEKFYQIMEN	11	Unmodified	_NYEKFYQIMEN_					0	0	0		tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.5586242675781	3	493.558865	1477.65477	-0.13878	-6.8498E-05	-0.7168	-0.00035378	-0.85559	-0.00042228	493.5585647993397	23.715	0.85758	23.715	23.524	24.381	0					198	79	4	0	0	0	0.41448	1	2483	2483		1.0136	0	1	212020			14599	13522	9580	9693	19890	19890					-0.06495531070549987
NYENKQYLF	9	Unmodified	_NYENKQYLF_					0	0	0		nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251;ENST00000535257.1_1_12:122391860-122397069:+|nuORF	nc|ENSG00000158023|Q8TBY9-2|CFAP251	nc|ENSG00000158023|Q8TBY9-2|CFAP251	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.294921875	2	609.793121	1217.57169	0.23294	0.00014204	-0.16107	-9.8218E-05	0.071869	4.3825E-05	609.7928306203237	49.875	0.66909	49.875	49.707	50.376	0					42	23	3	0	0	0	0.064247	1	10277	10277		40.239	26.624	1	231240			14600	3676	9581	9694	19891	19891					-0.02839479736235262
NYENKQYLF	9	Unmodified	_NYENKQYLF_					0	0	0		nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251;ENST00000535257.1_1_12:122391860-122397069:+|nuORF	nc|ENSG00000158023|Q8TBY9-2|CFAP251	nc|ENSG00000158023|Q8TBY9-2|CFAP251	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.7928466796875	2	609.793121	1217.57169	0.34926	0.00021298	-0.084245	-5.1372E-05	0.26501	0.0001616	609.7927636987681	49.81	0.55109	49.883	49.686	50.237	0.07312					39	19	3	0	0	0	0.24021	1	10160	10160		13.906	5.9959	1	214020			14601	3676	9581	9694	19892	19892					-0.02839479736235262
NYFDEQFEF	9	Unmodified	_NYFDEQFEF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.7537841796875	2	619.753661	1237.49277	0.14366	8.9032E-05	0.16958	0.0001051	0.31323	0.00019413	619.7536693854668	82.367	0.75426	82.367	82.118	82.872	0					75	26	4	0	0	0	0.0042454	2	20209	20163;20209		100.71	80.294	1	927030			14602	3843	9582	9695	19893;19894	19894					-0.11647751761188374
NYFDEQFEF	9	Unmodified	_NYFDEQFEF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.7537231445312	2	619.753661	1237.49277	-0.0043003	-2.6651E-06	0.3189	0.00019764	0.3146	0.00019498	619.7536846973911	82.372	0.77069	82.394	82.161	82.931	0.021744					73	27	4	0	0	0	0.0011298	3	20039	19993;20039;20084		121.35	90.709	1	943170			14603	3843	9582	9695	19895;19896;19897	19896					-0.11647751761188374
NYFETDISEL	10	Unmodified	_NYFETDISEL_					0	0	0			REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7809448242188	2	615.779876	1229.5452	0.2273	0.00013997	0.49881	0.00030716	0.72612	0.00044713	615.7803024552005	84.964	0.32398	84.964	84.865	85.189	0					16	10	2	0	0	0	0.43325	1	20975	20975		13.042	3.6593	1	89414	+		14604	8928	9583	9696	19898	19898					-0.060392134182166046
NYFEVPLPYF	10	Unmodified	_NYFEVPLPYF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.81689453125	2	644.816064	1287.61758	0.41117	0.00026513	0.7384	0.00047614	1.1496	0.00074127	644.8164897512469	99.789	1.2036	99.789	99.539	100.74	0					166	67	4	0	0	0	5.9292E-05	4	25502	25458;25502;25549;25591		103.42	103.42	1	3479500			14605	3951	9584	9697	19899;19900;19901;19902	19900					-0.014728345540106602
NYFEVPLPYF	10	Unmodified	_NYFEVPLPYF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.8174438476562	2	644.816064	1287.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.76	1	100.76	100.26	101.26	0								0	0	0	0.3332	1	25780	25780		8.1555	4.2111	1				14606	3951	9584	9697	19903	19903					-0.014728345540106602
NYFEVPLPYF	10	Unmodified	_NYFEVPLPYF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	644.816064	1287.61758	0.39527	0.00025487	1.015	0.00065451	1.4103	0.00090939	644.8165643900239	99.774	1.2093	99.817	99.553	100.76	0.042839	0.013838	0.00016806	NaN	103.42	190	73	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3652200			14607	3951	9584	9697							-0.014728345540106602
NYFHLAVAF	9	Unmodified	_NYFHLAVAF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENSG00000147459|ENST00000276440|DOCK5	nc|ENSG00000150760|Q14185|DOCK1;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2769775390625	2	541.276909	1080.53927	0.25036	0.00013551	2.2349	0.0012097	2.4853	0.0013452	541.2784002003812	72.45	0.88583	72.506	72.296	73.182	0.055939					69	30	3	0	0	0	0.0088567	1	16986	16986		70.716	40.491	1	934640			14608	3437;2674	9585	9698	19904	19904					0.0022177765142714634
NYFIPSHYF	9	Unmodified	_NYFIPSHYF_					0	0	0		nc|ENSG00000146414|Q149N8-5|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-5|SHPRH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.2799072265625	2	594.279649	1186.54475	0.64879	0.00038557	2.957	0.0017573	3.6058	0.0021428	594.2795604608464	66.777	1.1579	66.777	66.428	67.586	0					144	44	4	0	0	0	0.065541	5	15436	15357;15401;15436;15454;15498		39.957	14.558	1	659170			14609	7523	9586	9699	19905;19906;19907;19908;19909	19907					-0.04106543556758879
NYFIPSHYF	9	Unmodified	_NYFIPSHYF_					0	0	0		nc|ENSG00000146414|Q149N8-5|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-5|SHPRH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2799682617188	2	594.279649	1186.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.652	1	66.717	66.217	67.217	0.065071								0	0	0	0.025248	1	15242	15242		60.074	27.768	1				14610	7523	9586	9699	19910	19910					-0.04106543556758879
NYFLAVSNALF	11	Unmodified	_NYFLAVSNALF_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3145751953125	2	629.826963	1257.63937	0.36347	0.00022893	-0.43425	-0.0002735	-0.070779	-4.4579E-05	629.8265932548113	69.78	0.61798	69.841	69.554	70.172	0.060562					55	24	3	0	0	0	0.31003	1	16243	16243		10.151	3.9448	1	444880	+		14611	10717	9587	9700	19911	19911					0.02085970194548281
NYFLSPEKL	9	Unmodified	_NYFLSPEKL_					0	0	0		nc|ENSG00000118369|Q9P2H5-2|USP35;USP35|p.L831Pfs*16|1|0.13|ENSG00000118369|chr11:78210341-78210342|-/C|frameshift_variant;ENSG00000118369|ENST00000529308|USP35	nc|ENSG00000118369|Q9P2H5-2|USP35	nc|ENSG00000118369|Q9P2H5-2|USP35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7938232421875	2	555.795132	1109.57571	0.76445	0.00042488	-0.67268	-0.00037387	0.09177	5.1005E-05	555.7945058254193	54.003	0.47934	54.069	53.894	54.373	0.065128					40	17	3	0	0	0	0.22344	1	11424	11424		15.847	1.2655	1	171820			14612	2036	9588	9701	19912	19912					0.0253060975749122
NYFLWTEKF	9	Unmodified	_NYFLWTEKF_					0	0	0		ENSG00000100351|ENST00000344138|GRAP2	ENSG00000100351|ENST00000344138|GRAP2	ENSG00000100351|ENST00000344138|GRAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.30859375	2	624.308406	1246.60226	-0.12409	-7.7472E-05	0.51651	0.00032246	0.39242	0.00024499	624.3084580836872	73.738	1.1964	73.738	73.464	74.661	0					84	43	5	0	0	0	9.7567E-09	3	17562	17512;17562;17611		159.1	122.59	1	1510400			14613	1191	9589	9702	19913;19914;19915	19914					-0.011177013511996847
NYFLWTEKF	9	Unmodified	_NYFLWTEKF_					0	0	0		ENSG00000100351|ENST00000344138|GRAP2	ENSG00000100351|ENST00000344138|GRAP2	ENSG00000100351|ENST00000344138|GRAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.3085327148438	2	624.308406	1246.60226	0.2508	0.00015658	0.22098	0.00013796	0.47178	0.00029454	624.3082850803614	73.682	1.1153	73.735	73.482	74.597	0.052567					90	40	4	0	0	0	1.5265E-05	3	17396	17351;17396;17446		143.91	108.98	1	1280200			14614	1191	9589	9702	19916;19917;19918	19917					-0.011177013511996847
NYFPFQWKL	9	Unmodified	_NYFPFQWKL_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.819091796875	2	621.818941	1241.62333	0.41815	0.00026002	-3.0761	-0.0019128	-2.658	-0.0016528	621.8185822454836	80.059	3.4875	80.059	79.621	83.108	0					250	121	4	0	0	0	0.0034016	4	19467	19415;19440;19467;19670		107.19	74.882	1	1056700			14615	4055	9590	9703	19919;19920;19921;19922	19921					0.01218308748320851
NYFPFQWKL	9	Unmodified	_NYFPFQWKL_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3175659179688	2	621.818941	1241.62333	0.32258	0.00020059	-2.4839	-0.0015446	-2.1613	-0.001344	621.8185596046724	80.011	1.9393	80.037	79.71	81.65	0.026436					161	69	3	0	0	0	0.01063	6	19277	19277;19326;19502;19544;19581;19634		65.235	49.987	1	1044000			14616	4055	9590	9703	19923;19924;19925;19926;19927;19928	19923					0.01218308748320851
NYFPGGVALIW	11	Unmodified	_NYFPGGVALIW_					0	0	0		nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.8241577148438	2	618.824224	1235.63389	-0.16371	-0.00010131	0.066026	4.0858E-05	-0.097683	-6.0448E-05	618.8240820963869	95.973	0.72754	95.973	95.591	96.318	0					90	35	3	0	0	0	0.011439	4	24282	24282;24322;24369;24422		123.45	104.09	1	902290			14617	945	9591	9704	19929;19930;19931;19932	19929					0.025502914027583756
NYFPGGVALIW	11	Unmodified	_NYFPGGVALIW_					0	0	0		nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.8237915039062	2	618.824224	1235.63389	-0.067768	-4.1936E-05	0.059544	3.6847E-05	-0.0082238	-5.0891E-06	618.8241700587773	95.905	0.64025	95.944	95.634	96.274	0.039223					63	29	3	0	0	0	0.0032144	2	24110	24110;24153		136.33	111.34	1	962130			14618	945	9591	9704	19933;19934	19933					0.025502914027583756
NYFPGGVALIW	11	Unmodified	_NYFPGGVALIW_					0	0	0		nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.8245239257812	2	618.824224	1235.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.095	1	96.134	95.634	96.634	0.039772								0	0	0	0.1572	1	24201	24201		32.786	13.529	1				14619	945	9591	9704	19935	19935					0.025502914027583756
NYFPGGVALIW	11	Unmodified	_NYFPGGVALIW_					0	0	0		nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	nc|ENSG00000084112|Q8WYL5-3|SSH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.8235473632812	2	618.824224	1235.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.222	1	96.262	95.762	96.762	0.039772								0	0	0	0.19725	1	24240	24240		27.629	12.791	1				14620	945	9591	9704	19936	19936					0.025502914027583756
NYFSKLWLL	9	Unmodified	_NYFSKLWLL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3474731445312	2	592.329142	1182.64373	0.47885	0.00028364	-0.58623	-0.00034724	-0.10738	-6.3604E-05	592.8300682559538	82.751	0.25237	82.751	82.595	82.848	0					16	8	3	0	0	0	0.18398	1	20301	20301		20.415	8.7742	1	84916			14621	1226	9592	9705	19937	19937					0.0597147940816285
NYFSKLWLL	9	Unmodified	_NYFSKLWLL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3474731445312	2	592.329142	1182.64373	0.33961	0.00020116	0.30199	0.00017887	0.64159	0.00038004	592.3298450227275	82.813	0.25522	82.835	82.648	82.904	0.021744					14	8	2	0	0	0	0.14444	1	20142	20142		24.991	13.351	1	150640			14622	1226	9592	9705	19938	19938					0.0597147940816285
NYFTGVFAF	9	Unmodified	_NYFTGVFAF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.255859375	2	533.255643	1064.49673	0.5099	0.0002719	-0.17539	-9.3529E-05	0.3345	0.00017838	533.2554771370174	91.721	1.444	91.721	91.484	92.928	0					134	54	4	0	0	0	0.00022088	3	23060	23022;23060;23108		136.33	96.384	1	4001000			14623	762	9593	9706	19939;19940;19941	19940					-0.032936174768110504
NYFTGVFAF	9	Unmodified	_NYFTGVFAF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.255859375	2	533.255643	1064.49673	0.49738	0.00026523	-0.18253	-9.7338E-05	0.31485	0.00016789	533.2554932605292	91.722	1.4255	91.758	91.465	92.89	0.036331					132	50	5	0	0	0	8.832E-06	3	22888	22844;22888;22929		149.99	110.04	1	4326100			14624	762	9593	9706	19942;19943;19944	19943					-0.032936174768110504
NYGDIELLF	9	Unmodified	_NYGDIELLF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2716674804688	2	542.27149	1082.52843	0.47729	0.00025882	0.2252	0.00012212	0.70249	0.00038094	542.2714047757612	91.665	1.1391	91.665	91.319	92.458	0					98	42	3	0	0	0	0.00061878	3	22995	22995;23040;23099		129.77	61.692	1	1646900			14625	5216	9594	9707	19945;19946;19947	19945					-0.009536695135238915
NYGDIELLF	9	Unmodified	_NYGDIELLF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2716064453125	2	542.27149	1082.52843	0.37583	0.0002038	0.22865	0.00012399	0.60447	0.00032779	542.2714357734511	91.623	0.92886	91.659	91.384	92.312	0.035446					90	32	4	0	0	0	0.0005281	2	22846	22800;22846		131.27	42.364	1	1720900			14626	5216	9594	9707	19948;19949	19949					-0.009536695135238915
NYGDQVQHF	9	Unmodified	_NYGDQVQHF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.24609375	2	554.246338	1106.47812	0.0022028	1.2209E-06	-0.021429	-1.1877E-05	-0.019227	-1.0656E-05	554.2459423063968	40.08	0.57154	40.08	39.836	40.408	0					35	19	3	0	0	0	0.24767	1	7314	7314		13.042	6.8367	1	63402			14627	3543	9595	9708	19950	19950					-0.07085779118665414
NYGDQVQHF	9	Unmodified	_NYGDQVQHF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.748046875	2	554.246338	1106.47812	0.20723	0.00011486	-0.29979	-0.00016616	-0.092565	-5.1304E-05	554.24585878088	39.999	0.37856	40.088	39.905	40.284	0.088562					31	14	3	0	0	0	0.23216	1	7175	7175		14.838	9.6076	1	59643			14628	3543	9595	9708	19951	19951					-0.07085779118665414
NYGDYFNVF	9	Unmodified	_NYGDYFNVF_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.745849609375	2	569.745639	1137.47673	0.5394	0.00030732	-0.13226	-7.5353E-05	0.40714	0.00023197	569.7454845684476	83.731	0.67986	83.731	83.451	84.131	0					60	22	4	0	0	0	0.0081278	1	20571	20571		72.968	54.822	1	786510			14629	1552	9596	9709	19952	19952					-0.08651413207417136
NYGDYFNVF	9	Unmodified	_NYGDYFNVF_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7457885742188	2	569.745639	1137.47673	0.2485	0.00014158	0.2309	0.00013155	0.4794	0.00027314	569.7456364173305	83.715	0.71797	83.737	83.499	84.217	0.021744					62	25	3	0	0	0	0.0034419	1	20410	20410		106.94	84.204	1	957740			14630	1552	9596	9709	19953	19953					-0.08651413207417136
NYGDYFNVFF	10	Unmodified	_NYGDYFNVFF_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.280029296875	2	643.279846	1284.54514	0.52985	0.00034084	-0.0013356	-8.5916E-07	0.52851	0.00033998	643.2797354771246	97.959	0.63409	97.959	97.723	98.357	0					103	32	4	0	0	0	0.051426	3	24920	24881;24920;24959		57.249	37.887	1	973120			14631	1552	9597	9710	19954;19955;19956	19955					-0.08575168627567109
NYGDYFNVFF	10	Unmodified	_NYGDYFNVFF_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.2798461914062	2	643.279846	1284.54514	0.46497	0.00029911	0.031125	2.0022E-05	0.4961	0.00031913	643.2797806231482	97.968	0.54441	98.008	97.755	98.3	0.040848					89	27	4	0	0	0	0.00075942	3	24772	24726;24772;24814		93.166	61.898	1	697120			14632	1552	9597	9710	19957;19958;19959	19958					-0.08575168627567109
NYGEEDEEDGG	11	Unmodified	_NYGEEDEEDGG_					0	0	0			REV__nc|ENSG00000248546|O43423|ANP32CP	REV__nc|ENSG00000248546|O43423|ANP32CP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2095336914062	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.279	1	28.361	27.861	28.861	0.082134								0	0	0	0.34212	1	3665	3665		0	0	1		+		14633	12903	9598	9711	19960	19960					-0.19223622493427683
NYGHVYAVF	9	Unmodified	_NYGHVYAVF_					0	0	0		nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.2590942382812	2	535.258717	1068.50288	0.67672	0.00036222	0.2568	0.00013745	0.93352	0.00049968	535.2587976990108	54.493	1.0805	54.493	54.267	55.347	0					82	45	2	0	0	0	0.0088567	1	11681	11681		70.716	45.316	1	796620			14634	719	9599	9712	19961	19961					-0.028630992453145154
NYGHVYAVF	9	Unmodified	_NYGHVYAVF_					0	0	0		nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.2592163085938	2	535.258717	1068.50288	0.82829	0.00044335	0.097207	5.2031E-05	0.9255	0.00049538	535.2586720481789	54.455	0.83871	54.52	54.285	55.123	0.065128					89	40	4	0	0	0	0.0088567	1	11535	11535		70.716	45.316	1	749620			14635	719	9599	9712	19962	19962					-0.028630992453145154
NYGKISYTF	9	Unmodified	_NYGKISYTF_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2601928710938	2	546.771657	1091.52876	0.49773	0.00027215	-0.089136	-4.8737E-05	0.40859	0.00022341	547.2743458299739	57.52	0.27138	57.52	57.378	57.65	0					12	9	2	0	0	0	0.17247	1	12578	12578		21.747	1.293	1	119390			14636	2118	9600	9713	19963	19963					-0.013342497936719155
NYGKVSLLI	9	Unmodified	_NYGKVSLLI_					0	0	0			REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.78424072265625	2	503.800217	1005.58588	0.51402	0.00025896	2.2332	0.0011251	2.7472	0.001384	503.801083718176	97.745	0.67505	97.786	97.755	98.43	0.040855					56	34	2	0	0	0	0.24767	1	24717	24717		13.042	2.2185	1	170860	+		14637	12065	9601	9714	19964	19964					0.08331217482725606
NYGLAIEVTHL	11	Unmodified	_NYGLAIEVTHL_					0	0	0		ENSG00000125378|ENST00000245451|BMP4	ENSG00000125378|ENST00000245451|BMP4	ENSG00000125378|ENST00000245451|BMP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7955322265625	2	615.32987	1228.64519	-0.087725	-5.398E-05	3.2555	0.0020032	3.1677	0.0019492	615.3321674394844	83.744	0.085297	83.766	83.723	83.809	0.021744					4	2	2	0	0	0	0.31042	1	20449	20449		6.2058	1.4498	1	32008			14638	2290	9602	9715	19965	19965					0.04001068706224942
NYGLRTFLF	9	Unmodified	_NYGLRTFLF_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8035888671875	2	565.803291	1129.59203	-0.010299	-5.8271E-06	0.78999	0.00044698	0.77969	0.00044115	565.8039238959452	73.215	1.1987	73.215	72.973	74.171	0					77	43	4	0	0	0	0.0040167	1	17364	17364		103.42	65.268	1	1455900			14639	2453	9603	9716	19966	19966					0.032417357142321634
NYGLRTFLF	9	Unmodified	_NYGLRTFLF_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8033447265625	2	565.803291	1129.59203	0.13621	7.7067E-05	0.13944	7.8896E-05	0.27565	0.00015596	565.8032872896626	73.14	0.64045	73.192	72.951	73.591	0.052574					62	24	4	0	0	0	0.0040167	4	17233	17170;17187;17233;17275		103.42	72.783	1	1632400			14640	2453	9603	9716	19967;19968;19969;19970	19969					0.032417357142321634
NYGQYFTLW	9	Unmodified	_NYGQYFTLW_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2771606445312	2	596.277106	1190.53966	0.11844	7.0625E-05	0.062683	3.7376E-05	0.18113	0.000108	596.2769800795659	87.871	1.3037	87.901	87.653	88.957	0.030037					137	49	4	0	0	0	5.7591E-09	2	21688	21688;21804		166.45	111.67	1	1805300			14641	1645	9604	9717	19971;19972	19971					-0.04798847419397134
NYGQYFTLW	9	Unmodified	_NYGQYFTLW_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	596.277106	1190.53966	0.40525	0.00024164	-0.2521	-0.00015032	0.15315	9.132E-05	596.2767757727171	87.897	1.5104	87.897	87.633	89.143	0	-0.0018957	-0.00019077	NaN	166.45	132	58	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2398700			14642	1645	9604	9717							-0.04798847419397134
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2723999023438	2	579.272355	1156.53016	0.55459	0.00032126	-0.46008	-0.00026651	0.094517	5.4751E-05	579.2719445744168	57.64	0.64717	57.64	57.434	58.081	0					45	21	3	0	0	0	0.0022565	1	12660	12660		114.2	80.099	1	720750			14643	1845	9605	9718	19973	19973					-0.04184615704912176
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2723999023438	2	579.272355	1156.53016	0.47383	0.00027448	-0.11182	-6.4772E-05	0.36202	0.00020971	579.2723476278909	57.57	0.68663	57.638	57.393	58.08	0.068371					52	25	4	0	0	0	0.0044564	1	12506	12506		92.653	65.77	1	823060			14644	1845	9605	9718	19974	19974					-0.04184615704912176
NYGTIKWFF	9	Unmodified	_NYGTIKWFF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3206787109375	2	588.297842	1174.58113	0.61551	0.0003621	-0.87326	-0.00051374	-0.25775	-0.00015163	588.2970719676616	76.333	0.8046	76.373	76.163	76.968	0.03923					49	29	3	0	0	0	0.12214	1	18212	18212		27.629	2.2295	1	894910			14645	1023	9606	9719	19975	19975					0.0008233333992393455
NYGTIKWFF	9	Unmodified	_NYGTIKWFF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	588.297842	1174.58113	0.50672	0.0002981	-0.87515	-0.00051485	-0.36843	-0.00021675	588.297078435667	76.407	0.64227	76.407	76.253	76.895	0	0.017353	-1.0425E-06	NaN	27.629	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	721590			14646	1023	9606	9719							0.0008233333992393455
NYGYRHNAEE	10	Unmodified	_NYGYRHNAEE_					0	0	0		HAPLN4|p.R261H|1|0.44|ENSG00000187664|chr19:19258558-19258558|C/T|missense_variant;ENSG00000187664|ENST00000291481|HAPLN4	HAPLN4|p.R261H|1|0.44|ENSG00000187664|chr19:19258558-19258558|C/T|missense_variant	HAPLN4|p.R261H|1|0.44|ENSG00000187664|chr19:19258558-19258558|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.18359375	3	418.182898	1251.52686	0.68825	0.00028781	0.90428	0.00037816	1.5925	0.00066597	418.18311035049754	69.168	0.48327	69.168	69.012	69.496	0					23	16	2	0	0	0	0.42901	1	16177	16177		5.0475	0	1	423880			14647	5127	9607	9720	19976	19976					-0.08883910549570828
NYIDIVKYVF	10	Unmodified	_NYIDIVKYVF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3453979492188	2	637.344989	1272.67542	0.4749	0.00030267	0.32948	0.00020999	0.80437	0.00051266	637.3450813715815	85.27	0.56098	85.27	85.07	85.631	0					47	22	4	0	0	0	0.016485	3	21092	21043;21092;21141		70.929	56.523	1	641280			14648	3824	9608	9721	19977;19978;19979	19978					0.04999427371421916
NYIDIVKYVF	10	Unmodified	_NYIDIVKYVF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3452758789062	2	637.344989	1272.67542	0.62635	0.0003992	0.27092	0.00017267	0.89727	0.00057187	637.3450374784812	85.265	0.53791	85.288	85.091	85.628	0.023132					64	22	4	0	0	0	0.058701	3	20892	20892;20939;21006		55.249	45.098	1	697230			14649	3824	9608	9721	19980;19981;19982	19980					0.04999427371421916
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.329833984375	2	584.329673	1166.64479	0.65185	0.00038089	-0.70925	-0.00041444	-0.057403	-3.3542E-05	584.3294504582714	55.55	2.0604	55.55	55.293	57.354	0					176	74	5	0	0	0	4.6221E-09	4	12009	11965;12009;12053;12099		168.54	75.884	1	8016500			14650	494	9609	9722	19983;19984;19985;19986	19984					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3440551757812	2	584.329673	1166.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.983	1	57.983	57.483	58.483	0								0	0	0	0.1539	1	12747	12747		24.991	4.5764	1				14651	494	9609	9722	19987	19987					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.329833984375	2	584.329673	1166.64479	0.71884	0.00042004	-0.72505	-0.00042367	-0.0062076	-3.6273E-06	584.329441765572	55.498	1.0516	55.563	55.335	56.387	0.065128					113	39	5	0	0	0	1.5265E-05	5	11866	11807;11820;11866;11908;11953		143.91	68.319	1	7263900			14652	494	9609	9722	19988;19989;19990;19991;19992	19990					0.06813693777053231
NYIEDLQNGPI	11	Unmodified	_NYIEDLQNGPI_					0	0	0		ENSG00000144048|ENST00000272444|DUSP11;nc|ENSG00000144048|O75319-1|DUSP11	ENSG00000144048|ENST00000272444|DUSP11	ENSG00000144048|ENST00000272444|DUSP11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.3135986328125	2	638.314417	1274.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.188	1	74.237	73.737	74.737	0.048546								0	0	0	0.31505	1	17529	17529		9.544	2.4423	1				14653	3195	9610	9723	19993	19993					-0.0120412939866128
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.82177734375	2	584.821681	1167.62881	0.66616	0.00038959	-0.070109	-4.1001E-05	0.59605	0.00034858	584.8214206700678	70.927	0.9059	70.927	70.708	71.614	0					66	31	3	0	0	0	0.00046066	2	16680	16680;16744		132.38	84.631	1	1109900			14654	1267	9611	9724	19994;19995	19994					0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8219604492188	2	584.821681	1167.62881	0.94416	0.00055216	-0.31367	-0.00018344	0.63048	0.00036872	584.8213116791371	70.848	0.80255	70.906	70.689	71.492	0.058578					63	29	3	0	0	0	0.0011298	2	16503	16503;16554		121.35	67.513	1	670160			14655	1267	9611	9724	19996;19997	19996					0.05169987540148213
NYIEIMPSVAE	11	Unmodified	_NYIEIMPSVAE_					0	0	0		ENSG00000108379|ENST00000225512|WNT3	ENSG00000108379|ENST00000225512|WNT3	ENSG00000108379|ENST00000225512|WNT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3064575195312	2	633.307746	1264.60094	0.16484	0.00010439	-0.72461	-0.0004589	-0.55977	-0.00035451	633.3074898725182	77.688	0.31458	77.688	77.555	77.869	0					16	10	2	0	0	0	0.35693	1	18751	18751		11.495	2.1116	1	120080			14656	1588	9612	9725	19998	19998					-0.02077703502231998
NYIEIMPSVAE	11	Unmodified	_NYIEIMPSVAE_					0	0	0		ENSG00000108379|ENST00000225512|WNT3	ENSG00000108379|ENST00000225512|WNT3	ENSG00000108379|ENST00000225512|WNT3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	633.307746	1264.60094	0.41996	0.00026596	-0.59128	-0.00037446	-0.17131	-0.00010849	633.3074840621011	77.616	0.29247	77.651	77.587	77.88	0.034485	-0.018783	5.3806E-05	NaN	11.495	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163270			14657	1588	9612	9725							-0.02077703502231998
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.8056640625	2	524.8055	1047.59645	0.20172	0.00010587	0.28107	0.00014751	0.4828	0.00025337	524.805563245048	58.096	0.30986	58.096	57.907	58.217	0					37	10	4	0	0	0	0.0042703	1	12815	12815		99.755	37.183	1	2061300			14658	2805	9613	9726	19999	19999					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.8055419921875	2	524.8055	1047.59645	0.021605	1.1338E-05	0.16044	8.4197E-05	0.18204	9.5536E-05	524.8054400333864	58.373	0.58926	58.373	58.256	58.846	0					43	21	3	0	0	0	0.015341	2	12852	12852;12900		61.602	21.652	1	469460			14659	2805	9613	9726	20000;20001	20000					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.805419921875	2	524.8055	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.122	1	58.192	57.692	58.692	0.070477								0	0	0	0.04112	1	12651	12651		51.63	17.228	1				14660	2805	9613	9726	20002	20002					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8052978515625	2	524.8055	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.343	1	58.413	57.913	58.913	0.070477								0	0	0	0.12135	1	12718	12718		29.841	3.5724	1				14661	2805	9613	9726	20003	20003					0.07455200137133033
NYIFGFHPHG	10	Unmodified	_NYIFGFHPHG_					0	0	0		ENSG00000124003|ENST00000446656|MOGAT1	ENSG00000124003|ENST00000446656|MOGAT1	ENSG00000124003|ENST00000446656|MOGAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3021850585938	2	594.78289	1187.55123	0.56505	0.00033608	2.568	0.0015274	3.1331	0.0018635	595.2865952084276	66.834	1.0479	66.899	66.532	67.58	0.065071					87	38	4	0	0	0	0.36288	1	15256	15256		15.847	1.0089	1	542630			14662	2233	9614	9727	20004	20004					-0.035046056053943175
NYIGISLRI	9	Unmodified	_NYIGISLRI_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.8111572265625	2	524.811116	1047.60768	0.46894	0.00024611	0.10159	5.3315E-05	0.57053	0.00029942	524.8110234972227	67.368	0.86086	67.368	67.188	68.049	0					79	33	3	0	0	0	0.002259	4	15636	15585;15636;15684;15732		114.19	34.59	1	807370			14663	291	9615	9728	20005;20006;20007;20008	20006					0.08578022231290561
NYIGISLRI	9	Unmodified	_NYIGISLRI_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8114013671875	2	524.811116	1047.60768	0.58626	0.00030767	-0.10552	-5.538E-05	0.48073	0.0002523	524.810998800929	67.309	1.0653	67.374	67.184	68.249	0.065071					83	37	4	0	0	0	0.002259	4	15476	15420;15476;15524;15579		114.19	34.59	1	1083200			14664	291	9615	9728	20009;20010;20011;20012	20010					0.08578022231290561
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.3160400390625	2	538.316566	1074.61858	0.45973	0.00024748	-0.27724	-0.00014924	0.18248	9.8234E-05	538.3165077840076	62.507	2.9374	62.507	62.175	65.112	0					252	107	5	0	0	0	5.7591E-09	9	14220	14086;14133;14176;14220;14271;14322;14369;14429;14566		166.45	58.451	1	11566000			14665	612	9616	9729	20013;20014;20015;20016;20017;20018;20019;20020;20021	20016					0.08425424605570697
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.31689453125	2	538.316566	1074.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.776	1	65.776	65.276	66.276	0								0	0	0	0.16041	1	15122	15122		24.021	9.1823	1				14666	612	9616	9729	20022	20022					0.08425424605570697
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.3169555664062	2	538.316566	1074.61858	0.54743	0.00029469	-0.35084	-0.00018886	0.19658	0.00010582	538.3164623986966	62.418	2.8164	62.491	62.175	64.991	0.072701					230	104	5	0	0	0	6.2762E-06	11	13956	13914;13956;14002;14050;14096;14146;14190;14235;14284;14353;14406		152.41	56.127	1	9418600			14667	612	9616	9729	20023;20024;20025;20026;20027;20028;20029;20030;20031;20032;20033	20024					0.08425424605570697
NYIHRPDVYA	10	Unmodified	_NYIHRPDVYA_					0	0	0		tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3141479492188	2	624.312012	1246.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.627	1	75.627	75.127	76.127	0								0	0	0	0.16785	1	18125	18125		34.402	5.3201	1				14668	13589	9617	9730	20034	20034					-0.003969687507378694
NYIHRPDVYA	10	Unmodified	_NYIHRPDVYA_					0	0	0		tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.313720703125	2	624.312012	1246.60947	0.26161	0.00016333	2.4718	0.0015432	2.7334	0.0017065	624.3136025753523	75.642	0.46906	75.686	75.357	75.826	0.044037					34	21	2	0	0	0	0.24016	2	17965	17965;17992		29.082	0	1	762380			14669	13589	9617	9730	20035;20036	20035					-0.003969687507378694
NYIHVGAQL	9	Unmodified	_NYIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.77197265625	2	507.771991	1013.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.693	1	48.693	48.193	49.193	0								0	0	0	0.16041	1	9916	9916		24.021	2.2739	1				14670	4670	9618	9731	20037	20037					0.023205896460467557
NYIIGFELFK	10	Unmodified	_NYIIGFELFK_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3190307617188	2	622.339707	1242.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.106	1	85.106	84.606	85.606	0								0	0	0	0.33443	1	21016	21016		6.7232	0.99131	1				14671	859	9619	9732	20038	20038					0.05323444716987069
NYIISVLNL	9	Unmodified	_NYIISVLNL_					0	0	0		ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF	ENST00000566127.1_1_16:29556504-29560080:-|nuORF	ENST00000566127.1_1_16:29556504-29560080:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.28662109375	2	524.8055	1047.59645	0.33746	0.0001771	-0.32432	-0.00017021	0.013137	6.8945E-06	524.805430947318	91.114	0.46668	91.114	90.911	91.378	0					23	15	3	0	0	0	0.20965	1	22866	22866		24.882	8.7325	1	233650			14672	7018	9620	9733	20039	20039					0.07455200137133033
NYIISVLNL	9	Unmodified	_NYIISVLNL_					0	0	0		ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF	ENST00000566127.1_1_16:29556504-29560080:-|nuORF	ENST00000566127.1_1_16:29556504-29560080:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8057861328125	2	524.8055	1047.59645	0.023832	1.2507E-05	0.10113	5.3075E-05	0.12497	6.5582E-05	524.8056065515722	91.091	0.37181	91.127	90.936	91.308	0.035446					22	12	2	0	0	0	0.018907	1	22684	22684		59.052	30.558	1	213460			14673	7018	9620	9733	20040	20040					0.07455200137133033
NYIKDDTRH	9	Unmodified	_NYIKDDTRH_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2852172851562	2	581.285994	1160.55744	0.55705	0.0003238	-2.2453	-0.0013052	-1.6883	-0.00098136	581.2846494887217	100.12	0.43494	100.12	99.887	100.32	0					40	21	3	0	0	0	0.24021	1	25552	25552		13.906	3.0821	1	202590			14674	2741	9621	9734	20041	20041					-0.016421321645566422
NYIKRNWRI	9	Unmodified	_NYIKRNWRI_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5754699707031	3	421.575401	1261.70437	0.36004	0.00015178	-0.39664	-0.00016722	-0.036606	-1.5432E-05	421.57519115652127	36.047	1.628	36.047	35.765	37.393	0					148	63	3	0	0	0	0.27266	7	6108	6063;6108;6155;6202;6227;6296;6350		10.151	5.7444	1	90538			14675	2246	9622	9735	20042;20043;20044;20045;20046;20047;20048	20043					0.08399009511072109
NYIKRNWRI	9	Unmodified	_NYIKRNWRI_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.575439453125	3	421.575401	1261.70437	0.01929	8.1322E-06	0.081207	3.4235E-05	0.1005	4.2367E-05	421.5753965232992	35.728	1.7262	35.807	35.539	37.266	0.078827					172	67	4	0	0	0	0.071704	6	5903	5857;5903;5947;6086;6171;6208		38.615	32.423	1	344800			14676	2246	9622	9735	20049;20050;20051;20052;20053;20054	20050					0.08399009511072109
NYIKRQKW	8	Unmodified	_NYIKRQKW_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7279663085938	2	568.322183	1134.62981	0.27325	0.00015529	4.213	0.0023943	4.4862	0.0025496	568.3244261696902	83.849	0.17216	83.871	83.809	83.981	0.021751					8	5	2	0	0	0	0.3576	1	20505	20505		4.756	0	1	50324	+		14677	8931	9623	9736	20055	20055					0.06788246699693445
NYILVKYNN	9	Unmodified	_NYILVKYNN_					0	0	0			REV__ENSG00000106066|ENST00000265394|CPVL	REV__ENSG00000106066|ENST00000265394|CPVL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2933349609375	2	570.806031	1139.59751	0.38608	0.00022038	0.44465	0.00025381	0.83073	0.00047419	570.8061682820261	81.563	0.68065	81.585	81.421	82.102	0.021866					41	24	2	0	0	0	0.2229	1	19781	19781		19.257	0	1	108380	+		14678	8565	9624	9737	20056	20056					0.03329414506060857
NYIMKIHNF	9	Unmodified	_NYIMKIHNF_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.3023071289062	2	590.302601	1178.59065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.829	1	46.829	46.329	47.329	0								0	0	0	0.12644	1	9356	9356		29.082	18.258	1				14679	1234	9625	9738	20057	20057					0.008497783538132353
NYIMKIHNF	9	Unmodified	_NYIMKIHNF_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3023071289062	2	590.302601	1178.59065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.677	1	46.761	46.261	47.261	0.083096								0	0	0	0.078437	1	9179	9179		39.95	29.126	1				14680	1234	9625	9738	20058	20058					0.008497783538132353
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3165283203125	2	622.316566	1242.61858	-0.038476	-2.3944E-05	-0.27329	-0.00017007	-0.31176	-0.00019402	622.3165932400437	77.666	2.3258	77.666	77.413	79.739	0					289	81	5	0	0	0	1.7199E-05	16	18746	18702;18746;18790;18838;18882;18934;19009;19060;19110;19143;19160;19212;19251;19261;19315;19367		142.08	110.81	1	28313000			14681	932	9626	9739	20059;20060;20061;20062;20063;20064;20065;20066;20067;20068;20069;20070;20071;20072;20073;20074	20060					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3170776367188	2	622.316566	1242.61858	0.23906	0.00014877	0.67895	0.00042252	0.91801	0.00057129	622.3168943623857	83.749	1.1356	83.749	83.079	84.215	0					72	38	2	0	0	0	0.2125	3	20644	20644;20654;20689		17.113	6.289	1	122130			14682	932	9626	9739	20075;20076;20077	20075					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8162841796875	2	622.316566	1242.61858	0.24794	0.0001543	-0.42595	-0.00026508	-0.17801	-0.00011078	622.3161700140216	93.187	0.92373	93.187	92.487	93.411	0					55	35	2	0	0	0	0.24767	1	23264	23264		13.042	2.2185	1	66905			14683	932	9626	9739	20078	20078					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.31591796875	2	622.316566	1242.61858	0.17137	0.00010665	0.41271	0.00025684	0.58408	0.00036348	622.8184735902698	93.729	0.31612	93.729	93.506	93.822	0					16	11	2	0	0	0	0.24767	1	23612	23612		13.042	2.2185	1	118900			14684	932	9626	9739	20079	20079					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3186645507812	2	622.316566	1242.61858	-0.38294	-0.00023831	0.57555	0.00035817	0.19261	0.00011986	622.3169858769822	107.15	0.98853	107.15	106.46	107.45	0					150	95	2	0	0	0	0.15282	8	27692	27520;27550;27560;27599;27670;27692;27696;27707		24.021	11.78	1	104500			14685	932	9626	9739	20080;20081;20082;20083;20084;20085;20086;20087	20085					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3174438476562	2	622.316566	1242.61858	-0.38942	-0.00024234	1.1346	0.00070611	0.74522	0.00046376	622.3171965288323	107.53	0.14287	107.53	107.45	107.6	0					22	13	2	0	0	0	0.24767	1	27743	27743		13.042	2.2185	1	79107			14686	932	9626	9739	20088	20088					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.284423828125	2	622.316566	1242.61858	0.1155	7.1876E-05	0.40429	0.0002516	0.51979	0.00032347	622.3165241144986	85.615	0.5106	85.615	85.339	85.849	0					35	23	2	0	0	0	0.24584	1	21142	21142		13.042	2.2185	1	85616			14687	932	9626	9739	20089	20089					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3167724609375	2	622.316566	1242.61858	0.23754	0.00014783	-0.50703	-0.00031554	-0.26949	-0.00016771	622.3165022996077	77.655	2.3601	77.69	77.417	79.777	0.034485					282	82	5	0	0	0	3.2353E-09	16	18582	18540;18582;18628;18673;18717;18760;18805;18856;18903;18963;19060;19081;19117;19123;19167;19219		171.09	138.3	1	27248000			14688	932	9626	9739	20090;20091;20092;20093;20094;20095;20096;20097;20098;20099;20100;20101;20102;20103;20104;20105	20091					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3156127929688	2	622.316566	1242.61858	0.10257	6.3833E-05	0.75316	0.0004687	0.85573	0.00053254	622.3169578183163	83.931	1.1654	83.953	83.1	84.266	0.021744					73	41	2	0	0	0	0.28472	1	20476	20476		8.7454	2.0222	1	79903			14689	932	9626	9739	20106	20106					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.316162109375	2	622.316566	1242.61858	0.072846	4.5333E-05	-0.1767	-0.00010996	-0.10385	-6.4628E-05	622.3163456203914	107.29	0.89273	107.32	106.6	107.49	0.025711					147	88	2	0	0	0	0.24767	6	27418	27315;27343;27369;27418;27453;27487		13.042	13.042	1	121810			14690	932	9626	9739	20107;20108;20109;20110;20111;20112	20110					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3165283203125	2	622.316566	1242.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.407	1	82.429	81.929	82.929	0.021744								0	0	0	0.14533	1	20034	20034		26.268	5.8145	1				14691	932	9626	9739	20113	20113					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3168334960938	2	622.316566	1242.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.78	1	100.82	100.32	101.32	0.042839								0	0	0	0.25287	1	25629	25629		8.7454	2.0222	1				14692	932	9626	9739	20114	20114					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2822875976562	2	622.316566	1242.61858	0.15833	9.853E-05	0.6212	0.00038658	0.77952	0.00048511	622.3168566275323	86.508	0.703	86.536	85.927	86.63	0.027573					37	26	2	0	0	0	0.23831	1	21214	21214		18.146	7.3224	1	78290			14693	932	9626	9739	20115	20115					0.006974246055506228
NYIPYLTKL	9	Unmodified	_NYIPYLTKL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8211669921875	2	562.82115	1123.62775	0.73337	0.00041276	-0.3442	-0.00019372	0.38917	0.00021903	562.82082475417	65.964	1.5773	65.964	65.732	67.309	0					130	58	4	0	0	0	0.0034159	3	15211	15162;15211;15258		107.1	63.241	1	2688800			14694	5518	9627	9740	20116;20117;20118	20117					0.07087773171224399
NYIPYLTKL	9	Unmodified	_NYIPYLTKL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.8211669921875	2	562.82115	1123.62775	0.61308	0.00034505	-0.26813	-0.00015091	0.34495	0.00019414	562.8208691294074	65.998	1.2496	66.065	65.734	66.984	0.066872					117	47	4	0	0	0	0.0011298	4	15044	14996;15044;15086;15135		121.35	73.597	1	2661600			14695	5518	9627	9740	20119;20120;20121;20122	20120					0.07087773171224399
NYIPYLTKLKF	11	Unmodified	_NYIPYLTKLKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.27099609375	3	467.270984	1398.79112	0.44512	0.00020799	-0.49191	-0.00022986	-0.046789	-2.1863E-05	467.2706457361415	66.627	1.0002	66.693	66.502	67.502	0.065071					117	36	4	0	0	0	0.26445	5	15264	15215;15264;15311;15363;15432		22.109	7.271	1	2325700			14696	5518	9628	9741	20123;20124;20125;20126;20127	20124					0.1076795122223757
NYIPYLTKLKF	11	Unmodified	_NYIPYLTKLKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.74737548828125	3	467.270984	1398.79112	0.45517	0.00021269	-0.95013	-0.00044397	-0.49497	-0.00023128	467.2704523020089	67.566	0.19466	67.63	67.501	67.696	0.063499					13	6	3	0	0	0	0.31043	1	15509	15509		8.2864	4.1698	1	88987			14697	5518	9628	9741	20128	20128					0.1076795122223757
NYIPYLTKLKF	11	Unmodified	_NYIPYLTKLKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	467.270984	1398.79112	0.6788	0.00031718	-0.77447	-0.00036189	-0.095672	-4.4705E-05	467.27054308499714	66.675	1.2974	66.675	66.428	67.725	0	-0.008694	-0.00013371	NaN	22.109	131	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1748500			14698	5518	9628	9741							0.1076795122223757
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.8037109375	2	554.803488	1107.59242	0.59901	0.00033234	-0.4011	-0.00022253	0.19792	0.0001098	554.8031850742291	53.764	0.72305	53.764	53.544	54.267	0					48	25	3	0	0	0	0.0097877	2	11498	11451;11498		67.838	32.688	1	443930			14699	1038	9629	9742	20129;20130	20130					0.0429311064342528
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8037109375	2	554.803488	1107.59242	0.69662	0.00038649	-0.38976	-0.00021624	0.30687	0.00017025	554.8031453305498	53.757	0.6274	53.822	53.627	54.254	0.06543					54	25	4	0	0	0	0.004443	1	11310	11310		93.166	47.466	1	391830			14700	1038	9629	9742	20131	20131					0.0429311064342528
NYIRTINPC	9	Unmodified	_NYIRTINPC_					0	0	0			REV__CPXM2|p.M334I|1|0.14|ENSG00000121898|chr10:123771016-123771016|C/T|missense_variant	REV__CPXM2|p.M334I|1|0.14|ENSG00000121898|chr10:123771016-123771016|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2607421875	2	547.276583	1092.53861	0.41951	0.00022959	-3.007	-0.0016457	-2.5875	-0.0014161	547.2753128833102	57.425	0.18347	57.494	57.393	57.577	0.068375					9	6	2	0	0	0	0.25979	1	12455	12455		11.64	0.81637	1	68345	+		14701	7857	9630	9743	20132	20132					-0.003953850599373254
NYISALNTLW	10	Unmodified	_NYISALNTLW_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8563232421875	2	597.811313	1193.60807	0.34765	0.00020783	0.015449	9.2354E-06	0.3631	0.00021706	597.8111984533466	88.52	0.2893	88.52	88.374	88.663	0					17	11	2	0	0	0	0.31547	1	22071	22071		9.544	0.16085	1	72976			14702	7464	9631	9744	20133	20133					0.0190139716048634
NYISALNTLW	10	Unmodified	_NYISALNTLW_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8563842773438	2	597.811313	1193.60807	0.25461	0.00015221	0.12791	7.6466E-05	0.38252	0.00022867	597.8115176613859	88.504	0.24621	88.534	88.411	88.657	0.030037					15	10	2	0	0	0	0.30844	1	21899	21899		14.405	2.1647	1	93434			14703	7464	9631	9744	20134	20134					0.0190139716048634
NYISFYDHL	9	Unmodified	_NYISFYDHL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.808837890625	2	586.274564	1170.53457	0.84214	0.00049373	-0.63981	-0.0003751	0.20234	0.00011863	586.274183703664	65.132	0.74765	65.132	64.897	65.645	0					44	27	2	0	0	0	0.16944	1	14903	14903		30.637	12.502	1	121500			14704	2244	9632	9745	20135	20135					-0.043871512820032876
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7718200683594	2	504.771657	1007.52876	0.47066	0.00023757	-0.14346	-7.2417E-05	0.32719	0.00016516	504.77154719351336	64.703	1.3042	64.703	64.457	65.761	0					99	47	3	0	0	0	7.7852E-13	5	14813	14768;14813;14883;14895;14953		184.36	70.154	1	3043000			14705	5191	9633	9746	20136;20137;20138;20139;20140	20137					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7718505859375	2	504.771657	1007.52876	0.38341	0.00019353	0.0093013	4.6951E-06	0.39271	0.00019823	504.77159804350424	64.659	1.2075	64.728	64.478	65.686	0.068916					108	46	4	0	0	0	9.7567E-09	4	14644	14597;14644;14696;14805		159.1	55.681	1	2157700			14706	5191	9633	9746	20141;20142;20143;20144	20142					0.025297502063381216
NYITGKGDVF	10	Unmodified	_NYITGKGDVF_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2843627929688	2	557.282389	1112.55022	0.66227	0.00036907	2.5358	0.0014132	3.1981	0.0017823	557.7854351342602	77.641	0.53349	77.675	77.522	78.055	0.034485					24	17	2	0	0	0	0.36848	1	18585	18585		15.248	0.41021	1	250310			14707	2631	9634	9747	20145	20145					-0.001548647649542545
NYITPNPIFF	10	Unmodified	_NYITPNPIFF_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.31640625	2	613.316232	1224.61791	0.2322	0.00014241	-0.40167	-0.00024635	-0.16947	-0.00010394	613.3161571405001	88.106	0.74303	88.106	87.883	88.626	0					61	27	4	0	0	0	0.02436	2	21917	21917;21957		74.2	57.087	1	739560			14708	2974	9635	9748	20146;20147	20146					0.014585851658239335
NYITPNPIFF	10	Unmodified	_NYITPNPIFF_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	613.316232	1224.61791	0.12116	7.4311E-05	-0.085826	-5.2638E-05	0.035337	2.1673E-05	613.3163075516323	88.115	0.67576	88.145	87.881	88.557	0.030037	0.019715	0.00020691	NaN	74.2	65	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	822100			14709	2974	9635	9748							0.014585851658239335
NYIVTDLAVF	10	Unmodified	_NYIVTDLAVF_					0	0	0		nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant	nc|ENSG00000042781|O75445-3|USH2A	nc|ENSG00000042781|O75445-3|USH2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2915649414062	2	577.808239	1153.60193	0.52493	0.00030331	0.38247	0.00022099	0.9074	0.0005243	577.8082368202753	91.992	0.34877	91.992	91.815	92.164	0					15	12	2	0	0	0	0.30966	1	23093	23093		21.537	0	1	88736			14710	546	9636	9749	20148	20148					0.03126878928947008
NYIYSISVF	9	Unmodified	_NYIYSISVF_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.830078125	2	553.281857	1104.54916	0.69145	0.00038256	-0.46761	-0.00025872	0.22383	0.00012384	553.2817516208052	83.652	0.29306	83.652	83.485	83.778	0					21	9	3	0	0	0	0.20194	1	20570	20570		24.021	4.7636	1	67794			14711	2828	9637	9750	20149	20149					0.001069208661419907
NYKAMLDFLL	10	Unmodified	_NYKAMLDFLL_					0	0	0		CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54	CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7931518554688	2	614.325742	1226.63693	0.094361	5.7969E-05	1.2725	0.0007817	1.3668	0.00083967	614.3264216881493	75.392	0.33416	75.436	75.235	75.569	0.044037					17	11	2	0	0	0	0.3016	1	17873	17873		21.537	5.3879	1	109640			14712	128	9638	9751	20150	20150					0.03267798465253691
NYKDLNGNVF	10	Unmodified	_NYKDLNGNVF_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.291015625	2	592.290745	1182.56694	0.21565	0.00012773	0.18276	0.00010825	0.39841	0.00023598	592.2908398616315	49.352	0.7071	49.352	49.143	49.85	0					69	24	4	0	0	0	0.044868	2	10105	10105;10152		59.052	42.903	1	491220			14713	2272	9639	9752	20151;20152	20151					-0.017043638790028126
NYKDLNGNVF	10	Unmodified	_NYKDLNGNVF_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.291015625	2	592.290745	1182.56694	0.16266	9.6343E-05	0.50649	0.00029999	0.66915	0.00039633	592.2906630033286	49.28	0.69004	49.357	49.155	49.845	0.076607					61	24	4	0	0	0	0.021044	2	9951	9951;10003		67.081	44.423	1	434350			14714	2272	9639	9752	20153;20154	20153					-0.017043638790028126
NYKITTKI	8	Unmodified	_NYKITTKI_					0	0	0			REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.24237060546875	2	490.792392	979.570232	0.353	0.00017325	2.0873	0.0010244	2.4403	0.0011977	490.7930144493575	57.877	0.16895	57.877	57.799	57.968	0					7	5	2	0	0	0	0.3576	1	12710	12710		1.8442	1.0506	1	34198	+		14715	13208	9640	9753	20155	20155					0.07962930965641135
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.3003540039062	2	605.300581	1208.58661	0.28588	0.00017304	-0.072911	-4.4133E-05	0.21296	0.00012891	605.3002047317962	46.128	0.52219	46.128	45.927	46.449	0					30	17	2	0	0	0	0.30408	2	9118	9118;9167		8.1555	3.2585	1	80379			14716	1108	9641	9754	20156;20157	20156					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.86932373046875	3	403.86948	1208.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.121	1	46.121	45.621	46.621	0								0	0	0	0.25837	1	9142	9142		7.609	0	1				14717	1108	9641	9754	20158	20158					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.86944580078125	3	403.86948	1208.58661	-0.12691	-5.1255E-05	0.22192	8.9627E-05	0.095012	3.8372E-05	403.8694172265427	45.987	0.573	46.072	45.853	46.426	0.085617					55	20	4	0	0	0	0.12214	1	8967	8967		27.629	16.829	1	189000			14718	1108	9641	9754	20159	20159					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3013916015625	2	605.300581	1208.58661	0.41837	0.00025324	-0.007673	-4.6445E-06	0.41069	0.00024859	605.3004244334271	46.04	0.42155	46.125	45.914	46.336	0.085617					24	15	2	0	0	0	0.31006	1	8969	8969		8.1555	4.8742	1	109220			14719	1108	9641	9754	20160	20160					-0.00933987868256736
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8112182617188	2	633.811313	1265.60807	-0.27208	-0.00017245	0.24949	0.00015813	-0.022596	-1.4321E-05	633.8113755697069	44.034	1.4319	44.034	43.773	45.205	0					132	50	4	0	0	0	0.00025817	5	8528	8475;8528;8582;8643;8694		148.27	148.27	1	734690			14720	897	9642	9755	20161;20162;20163;20164;20165	20162					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.876708984375	3	422.876634	1265.60807	-0.15939	-6.7402E-05	0.061776	2.6124E-05	-0.097614	-4.1279E-05	422.8766728988174	43.925	2.1735	44.014	43.683	45.857	0.088924					187	80	5	0	0	0	0.026809	4	8360	8313;8360;8407;8452		53.404	53.404	1	2576800			14721	897	9642	9755	20166;20167;20168;20169	20167					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8113403320312	2	633.811313	1265.60807	-0.022328	-1.4151E-05	0.2965	0.00018792	0.27417	0.00017377	633.8114217725463	43.944	0.83471	44.033	43.793	44.628	0.088924					83	28	4	0	0	0	0.0044683	5	8372	8319;8372;8418;8468;8509		100.09	100.09	1	814110			14722	897	9642	9755	20170;20171;20172;20173;20174	20171					-0.014106028395417525
NYKLTSITF	9	Unmodified	_NYKLTSITF_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7957763671875	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.75	1	60.823	60.323	61.323	0.073421								0	0	0	0.066177	1	13449	13449		43.772	19.983	1				14723	2669	9643	9756	20175	20175					0.036346097574551095
NYKMVFKI	8	Unmodified	_NYKMVFKI_					0	0	0			REV__ENST00000451333.1_1_2:71037932-71038202:-|nuORF	REV__ENST00000451333.1_1_2:71037932-71038202:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7933959960938	2	521.791338	1041.56812	0.33467	0.00017463	1.7868	0.00093233	2.1215	0.001107	521.7923480037111	38.371	0.71932	38.371	38.101	38.82	0					42	25	3	0	0	0	0.53817	1	6863	6863		2.5775	0	1	104910	+		14724	11932	9644	9757	20176	20176					0.04900178956199852
NYKQKRLF	8	Unmodified	_NYKQKRLF_					0	0	0			REV__nc|ENSG00000177034|Q5HYI7-2|MTX3	REV__nc|ENSG00000177034|Q5HYI7-2|MTX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.285400390625	2	548.816733	1095.61891	0.33311	0.00018282	-2.9008	-0.001592	-2.5677	-0.0014092	548.8153489987511	69.443	0.078354	69.505	69.449	69.528	0.062126					4	2	2	0	0	0	0.3576	1	16088	16088		5.2307	0.47466	1	42091	+		14725	10420	9645	9758	20177	20177					0.07492844325406622
NYKRYFPVI	9	Unmodified	_NYKRYFPVI_					0	0	0		chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B;ENSG00000267978|ENST00000595065|MAGEA9B;ENSG00000123584|ENST00000243314|MAGEA9	chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B	chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3316040039062	2	600.332216	1198.64988	0.21957	0.00013182	-0.25787	-0.00015481	-0.038304	-2.2995E-05	600.3320138536985	51.628	0.41119	51.628	51.475	51.886	0					21	13	2	0	0	0	0.21398	1	10810	10810		16.942	9.0321	1	65161			14726	189	9646	9759	20178	20178					0.05849997639666071
NYKRYFPVI	9	Unmodified	_NYKRYFPVI_					0	0	0		chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B;ENSG00000267978|ENST00000595065|MAGEA9B;ENSG00000123584|ENST00000243314|MAGEA9	chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B	chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.331787109375	2	600.332216	1198.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.624	1	51.694	51.194	52.194	0.069874								0	0	0	0.25692	1	10672	10672		7.9102	0	1				14727	189	9646	9759	20179	20179					0.05849997639666071
NYLDQIAKF	9	Unmodified	_NYLDQIAKF_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.K377*|1|0.38|ENSG00000126012|chrX:53211900-53211901|-/A|frameshift_variant;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2922973632812	2	556.292756	1110.57096	0.88763	0.00049378	-0.78648	-0.00043751	0.10116	5.6273E-05	556.794138288731	67.65	0.43546	67.714	67.526	67.961	0.063507					24	14	2	0	0	0	0.064247	1	15544	15544		40.239	23.126	1	190930			14728	2325	9647	9760	20180	20180					0.02009725614720992
NYLDQIAKF	9	Unmodified	_NYLDQIAKF_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.K377*|1|0.38|ENSG00000126012|chrX:53211900-53211901|-/A|frameshift_variant;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	556.292756	1110.57096	0.56811	0.00031603	-0.36758	-0.00020448	0.20053	0.00011155	556.2921757718623	67.771	0.51289	67.771	67.536	68.049	0	0.028759	0.00032792	NaN	40.239	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119220			14729	2325	9647	9760							0.02009725614720992
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8071899414062	2	570.806031	1139.59751	0.23644	0.00013496	-0.021971	-1.2541E-05	0.21447	0.00012242	570.8065567080997	78.695	2.1195	78.695	78.423	80.543	0					250	73	6	0	0	0	7.7852E-13	7	19072	19025;19072;19117;19170;19211;19260;19314		184.36	98.714	1	65979000			14730	110	9648	9761	20181;20182;20183;20184;20185;20186;20187	20182					0.03329414506060857
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8067016601562	2	570.806031	1139.59751	0.77413	0.00044188	1.1216	0.00064023	1.8957	0.0010821	570.8066905943971	80.798	1.6359	80.798	80.456	82.092	0					84	56	2	0	0	0	0.14444	1	19866	19866		24.991	7.8781	1	549870			14731	110	9648	9761	20188	20188					0.03329414506060857
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8068237304688	2	570.806031	1139.59751	0.31832	0.0001817	-0.11247	-6.4198E-05	0.20585	0.0001175	570.8063433002462	78.74	2.0864	78.77	78.451	80.538	0.030159					249	74	6	0	0	0	7.7852E-13	8	18907	18864;18907;18959;19009;19058;19111;19115;19165		184.36	88.245	1	52774000			14732	110	9648	9761	20189;20190;20191;20192;20193;20194;20195;20196	20190					0.03329414506060857
NYLDWLTSI	9	Unmodified	_NYLDWLTSI_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7860107421875	2	562.784764	1123.55498	0.38067	0.00021424	2.0756	0.0011681	2.4563	0.0013824	562.78602540403	101.17	0.85593	101.17	100.61	101.47	0					117	51	3	0	0	0	0.1019	2	25886	25886;25928		32.037	5.202	1	413360			14733	5215	9649	9762	20197;20198	20197					-0.0018598062217733968
NYLEATVWI	9	Unmodified	_NYLEATVWI_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.833251953125	2	554.787307	1107.56006	0.57888	0.00032115	-0.086034	-4.7731E-05	0.49284	0.00027342	554.7872481427153	85.611	0.77203	85.611	85.407	86.179	0					66	30	3	0	0	0	0.046885	1	21215	21215		63.961	25.987	1	737790			14734	933	9650	9763	20199	20199					0.010583232404314913
NYLEDRKNG	9	Unmodified	_NYLEDRKNG_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7728881835938	2	554.772719	1107.53089	-0.1106	-6.1359E-05	-0.32152	-0.00017837	-0.43212	-0.00023973	554.7724942836852	22.618	0.59822	22.618	22.324	22.922	0					88	48	3	0	0	0	0.34704	1	2119	2119		0.52476	0	1	43323			14735	1952	9651	9764	20200	20200					-0.01857821055864406
NYLFAELES	9	Unmodified	_NYLFAELES_					0	0	0			REV__ENSG00000105131|ENST00000221730|EPHX3	REV__ENSG00000105131|ENST00000221730|EPHX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.263916015625	2	543.261122	1084.50769	0.63778	0.00034648	3.4443	0.0018712	4.0821	0.0022176	543.2633063775653	92.783	0.27745	92.821	92.586	92.863	0.037369					16	9	2	0	0	0	0.25644	1	23187	23187		3.9444	0.66309	1	208430	+		14736	8527	9652	9765	20201	20201					-0.03118259893199138
NYLFAELES	9	Unmodified	_NYLFAELES_					0	0	0			REV__ENSG00000105131|ENST00000221730|EPHX3	REV__ENSG00000105131|ENST00000221730|EPHX3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	543.261122	1084.50769	0.62714	0.0003407	3.3628	0.0018269	3.9899	0.0021676	543.263387287374	92.842	0.37561	92.842	92.552	92.928	0	0.010509	-5.1379E-05	NaN	3.9444	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113960	+		14737	8527	9652	9765							-0.03118259893199138
NYLFRPICVT	10	Unmodified	_NYLFRPICVT_					0	0	0			REV__ENSG00000179695|ENST00000641202|OR6C2	REV__ENSG00000179695|ENST00000641202|OR6C2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.2189025878906	3	409.218115	1224.63251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.909	1	33.909	33.409	34.409	0								0	0	0	0.33738	1	5458	5458		1.5923	0	1		+		14738	10484	9653	9766	20202	20202					0.029183340423287518
NYLGKTLLSL	10	Unmodified	_NYLGKTLLSL_					0	0	0		ENST00000310528.8_1_13:53273405-53273483:+|nuORF	ENST00000310528.8_1_13:53273405-53273483:+|nuORF	ENST00000310528.8_1_13:53273405-53273483:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8195190429688	2	561.331882	1120.64921	0.42794	0.00024022	-0.86591	-0.00048606	-0.43797	-0.00024585	561.3313279966532	62.007	1.0339	62.08	61.901	62.934	0.073421					44	38	2	0	0	0	0.31731	1	14069	14069		6.2058	1.8765	1	1446300			14739	5998	9654	9767	20203	20203					0.09371158199974161
NYLHLDYNF	9	Unmodified	_NYLHLDYNF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7804565429688	2	599.780013	1197.54547	0.76539	0.00045907	0.15047	9.0249E-05	0.91586	0.00054931	599.7800001728766	66.659	1.19	66.659	66.452	67.642	0					115	45	3	0	0	0	0.002259	4	15412	15371;15412;15463;15508		114.19	56.41	1	2117000			14740	4573	9655	9768	20204;20205;20206;20207	20205					-0.04539748907723151
NYLHLDYNF	9	Unmodified	_NYLHLDYNF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.7806396484375	2	599.780013	1197.54547	0.67757	0.00040639	0.50739	0.00030432	1.185	0.00071071	599.7799914844267	66.627	1.3391	66.693	66.474	67.813	0.065071					133	48	5	0	0	0	0.0033402	4	15263	15221;15263;15309;15356		107.56	74.778	1	2738900			14741	4573	9655	9768	20208;20209;20210;20211	20209					-0.04539748907723151
NYLIFSEKEE	10	Unmodified	_NYLIFSEKEE_					0	0	0		tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.3146362304688	2	636.311343	1270.60813	0.18937	0.0001205	4.3118	0.0027437	4.5012	0.0028642	636.3138658513623	79.033	0.40631	79.033	78.875	79.282	0					20	13	2	0	0	0	0.4101	1	19205	19205		10.8	2.0541	1	134480			14742	13661	9656	9769	20212	20212					-0.016346476301805524
NYLIFSEKEE	10	Unmodified	_NYLIFSEKEE_					0	0	0		tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	636.311343	1270.60813	0.24041	0.00015298	4.4859	0.0028544	4.7263	0.0030074	636.3141637719763	79.029	0.49049	79.059	78.818	79.308	0.030159	0.013011	8.1339E-05	NaN	10.8	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124090			14743	13661	9656	9769							-0.016346476301805524
NYLIHRICRVL	11	Unmodified	_NYLIHRICRVL_					0	0	0			REV__ENSG00000173757|ENST00000293328|STAT5B	REV__ENSG00000173757|ENST00000293328|STAT5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2709045410156	3	467.271213	1398.79181	0.45517	0.00021269	-1.4391	-0.00067246	-0.98396	-0.00045978	467.2704523020089	67.566	0.19466	67.63	67.501	67.696	0.063499					13	6	3	0	0	0	0.40087	1	15485	15485		4.1166	0.52395	1	88987	+		14744	8989	9657	9770	20213	20213					0.10836467390345206
NYLKGHPMTAQ	11	Unmodified	_NYLKGHPMTAQ_					0	0	0			REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant	REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.3139038085938	2	630.313697	1258.61284	-0.17694	-0.00011153	0.16956	0.00010688	-0.0073765	-4.6495E-06	630.3133720690944	72.26	0.51413	72.26	72.042	72.556	0					41	16	3	0	0	0	0.2498	3	17093	17093;17142;17170		23.79	6.6769	1	268830	+		14745	13341	9658	9771	20214;20215;20216	20214					-0.006120419684066292
NYLKGHPMTAQ	11	Unmodified	_NYLKGHPMTAQ_					0	0	0			REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant	REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.758056640625	2	630.313697	1258.61284	-0.17694	-0.00011153	0.16956	0.00010688	-0.0073765	-4.6495E-06	630.3133720690944	72.26	0.51413	72.26	72.042	72.556	0					41	16	3	0	0	0	0.29854	1	17086	17086		20.415	3.3016	1	268830	+		14746	13341	9658	9771	20217	20217					-0.006120419684066292
NYLKGHPMTAQ	11	Unmodified	_NYLKGHPMTAQ_					0	0	0			REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant	REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3135986328125	2	630.313697	1258.61284	0.15112	9.5253E-05	-0.229	-0.00014434	-0.077881	-4.909E-05	630.3133251201463	72.213	0.56185	72.269	72.004	72.566	0.055931					46	19	3	0	0	0	0.2498	2	16908	16908;16949		23.79	3.0078	1	323340	+		14747	13341	9658	9771	20218;20219	20218					-0.006120419684066292
NYLKGHPMTAQ	11	Unmodified	_NYLKGHPMTAQ_					0	0	0			REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant	REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	630.313697	1258.61284	0.15112	9.5253E-05	-0.229	-0.00014434	-0.077881	-4.909E-05	630.3133251201463	72.213	0.56185	72.269	72.004	72.566	0.055931	0.0042633	-0.00019079	NaN	23.79	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323340	+		14748	13341	9658	9771							-0.006120419684066292
NYLKMYYF	8	Unmodified	_NYLKMYYF_					0	0	0			REV__ENST00000368885.7_1_6:111214828-111215200:+|nuORF	REV__ENST00000368885.7_1_6:111214828-111215200:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7640991210938	2	571.272978	1140.5314	0.39572	0.00022606	4.0744	0.0023276	4.4702	0.0025537	571.7778353089456	81.765	0.54633	81.787	81.523	82.069	0.021866					26	19	2	0	0	0	0.35759	1	19767	19767		9.3474	4.1168	1	293870	+		14749	11576	9659	9772	20220	20220					-0.03324117660372394
NYLLDMPLW	9	Oxidation (M)	_NYLLDM(Oxidation (M))PLW_		NYLLDM(1)PLW		NYLLDM(46)PLW	0	0	1		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.279052734375	2	590.788992	1179.56343	0.18339	0.00010834	0.67109	0.00039647	0.85448	0.00050482	590.789061251241	90.726	1.1672	90.761	90.331	91.498	0.035446					60	44	2	0	0	0	0.03918	1	22536	22536		45.7	27.565	1	187600			14750	2545	9660	9773	20221	20221		163			-0.019167499772265728
NYLLYVSNF	9	Unmodified	_NYLLYVSNF_					0	0	0		nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-6|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.78759765625	2	566.787307	1131.56006	0.36816	0.00020867	0.13282	7.5278E-05	0.50097	0.00028394	566.7873769275794	83.084	0.76001	83.084	82.848	83.608	0					54	25	4	0	0	0	0.0046221	2	20390	20390;20436		86.332	67.075	1	778460			14751	3980	9661	9774	20222;20223	20222					-0.0004567675957787287
NYLLYVSNF	9	Unmodified	_NYLLYVSNF_					0	0	0		nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-6|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7874755859375	2	566.787307	1131.56006	0.24336	0.00013793	0.25158	0.00014259	0.49494	0.00028053	566.7872920397544	83.086	0.6199	83.108	82.851	83.471	0.021744					57	21	4	0	0	0	0.038134	1	20221	20221		67.838	48.581	1	606100			14752	3980	9661	9774	20224	20224					-0.0004567675957787287
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.52484130859375	3	415.524707	1243.55229	0.47859	0.00019887	-0.62712	-0.00026058	-0.14853	-6.1717E-05	415.5244493716973	48.05	0.80465	48.05	47.852	48.656	0					54	27	3	0	0	0	0.17247	1	9716	9716		15.248	5.0979	1	183680			14753	4208	9662	9775	20225	20225					-0.05974391236486554
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.785400390625	2	622.783422	1243.55229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.071	1	94.071	93.571	94.571	0								0	0	0	0.27613	1	23741	23741		3.9444	1.6417	1				14754	4208	9662	9775	20226	20226					-0.05974391236486554
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.5245056152344	3	415.524707	1243.55229	0.31441	0.00013065	-0.33852	-0.00014066	-0.024106	-1.0017E-05	415.52449657830175	47.977	0.65873	48.057	47.813	48.472	0.080032					53	23	4	0	0	0	0.17247	1	9593	9593		15.248	5.0979	1	228940			14755	4208	9662	9775	20227	20227					-0.05974391236486554
NYLNVKWEDQ	10	Unmodified	_NYLNVKWEDQ_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.8796081542969	3	436.878815	1307.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.127	1	36.209	35.709	36.709	0.081715								0	0	0	0.33869	1	6004	6004		1.7423	0	1		+		14756	9323	9663	9776	20228	20228					-0.026887096787959308
NYLPAINGIVF	11	Unmodified	_NYLPAINGIVF_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000152700|ENST00000402673|SAR1B	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.8377075195312	2	610.837331	1219.66011	0.36398	0.00022233	0.34082	0.00020819	0.7048	0.00043052	610.83734462665	91.429	0.46648	91.429	91.269	91.735	0					55	17	4	0	0	0	0.0031856	2	22939	22939;22983		82.529	65.416	1	848290			14757	881	9664	9777	20229;20230	20229					0.05906560574226205
NYLPAINGIVF	11	Unmodified	_NYLPAINGIVF_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000152700|ENST00000402673|SAR1B	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.837646484375	2	610.837331	1219.66011	0.26017	0.00015892	0.58682	0.00035845	0.84699	0.00051737	610.8375075012858	91.406	0.66109	91.442	91.225	91.886	0.035446					59	23	4	0	0	0	0.015471	4	22777	22731;22777;22809;22823		96.367	77.11	1	716500			14758	881	9664	9777	20231;20232;20233;20234	20232					0.05906560574226205
NYLPFIMEL	9	Oxidation (M)	_NYLPFIM(Oxidation (M))EL_		NYLPFIM(1)EL		NYLPFIM(180)EL	0	0	1		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2915649414062	2	578.291368	1154.56818	0.30505	0.00017641	0.10165	5.8784E-05	0.4067	0.00023519	578.2913933088788	90.341	0.61569	90.341	90.118	90.734	0					81	24	5	0	0	0	9.8596E-13	3	22609	22566;22609;22660		181.33	141.37	1	3089500			14759	1974	9665	9778	20235;20236;20237	20236		119			-0.0029186583444698044
NYLPFIMEL	9	Oxidation (M)	_NYLPFIM(Oxidation (M))EL_		NYLPFIM(1)EL		NYLPFIM(180)EL	0	0	1		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.291748046875	2	578.291368	1154.56818	0.58904	0.00034064	-0.24708	-0.00014289	0.34196	0.00019775	578.2912640650337	92.181	2.4209	92.181	91.458	93.879	0					299	92	5	0	0	0	9.8596E-13	10	23183	23137;23183;23224;23272;23315;23359;23408;23454;23490;23504		181.33	141.37	1	3898700			14760	1974	9665	9778	20238;20239;20240;20241;20242;20243;20244;20245;20246;20247	20239		119			-0.0029186583444698044
NYLPFIMEL	9	Oxidation (M)	_NYLPFIM(Oxidation (M))EL_		NYLPFIM(1)EL		NYLPFIM(170)EL	0	0	1		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.29150390625	2	578.291368	1154.56818	0.12038	6.9616E-05	0.25977	0.00015022	0.38015	0.00021984	578.2915212930562	90.381	0.67516	90.415	90.087	90.762	0.034058					94	28	5	0	0	0	5.7591E-09	4	22449	22388;22401;22449;22498		166.45	126.49	1	3247800			14761	1974	9665	9778	20248;20249;20250;20251	20250		119			-0.0029186583444698044
NYLPFIMEL	9	Oxidation (M)	_NYLPFIM(Oxidation (M))EL_		NYLPFIM(1)EL		NYLPFIM(200)EL	0	0	1		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2919311523438	2	578.291368	1154.56818	0.56401	0.00032616	-0.19466	-0.00011257	0.36935	0.00021359	578.2912903221877	92.086	2.2355	92.122	91.613	93.849	0.036522					285	85	5	0	0	0	2.0801E-17	11	23006	22835;22901;22910;22953;23006;23052;23099;23141;23235;23280;23332		197.17	157.21	1	3404800			14762	1974	9665	9778	20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262	20256		119			-0.0029186583444698044
NYLPQNMTQ	9	Unmodified	_NYLPQNMTQ_					0	0	0		ENST00000492299.1_1_1:50610640-50645245:+|nuORF;ELAVL4|p.S199Kfs*53|1|0.61|ENSG00000162374|chr1:50195646-50195647|-/A|frameshift_variant;ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000107105|Q12926-2|ELAVL2;nc|ENSG00000066044|Q15717-2|ELAVL1;ENSG00000107105|ENST00000397312|ELAVL2;nc|ENSG00000196361|Q14576-2|ELAVL3;nc|ENSG00000162374|P26378-4|ELAVL4;ENSG00000162374|ENST00000371824|ELAVL4;ENSG00000196361|ENST00000359227|ELAVL3;nc|ENSG00000162374|P26378-5|ELAVL4;nc|ENSG00000162374|P26378-1|ELAVL4;nc|ENSG00000162374|P26378-3|ELAVL4;nc|ENSG00000162374|P26378|ELAVL4	ENST00000492299.1_1_1:50610640-50645245:+|nuORF	ENST00000492299.1_1_1:50610640-50645245:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.784912109375	2	554.758223	1107.50189	0.34693	0.00019246	-0.14342	-7.9563E-05	0.20352	0.0001129	554.7581314684692	36.495	0.48856	36.495	36.287	36.776	0					26	18	2	0	0	0	0.25376	1	6245	6245		6.2058	0	1	29230			14763	318	9666	9779	20263	20263					-0.04755681676488166
NYLPQNMTQ	9	Unmodified	_NYLPQNMTQ_					0	0	0		ENST00000492299.1_1_1:50610640-50645245:+|nuORF;ELAVL4|p.S199Kfs*53|1|0.61|ENSG00000162374|chr1:50195646-50195647|-/A|frameshift_variant;ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000107105|Q12926-2|ELAVL2;nc|ENSG00000066044|Q15717-2|ELAVL1;ENSG00000107105|ENST00000397312|ELAVL2;nc|ENSG00000196361|Q14576-2|ELAVL3;nc|ENSG00000162374|P26378-4|ELAVL4;ENSG00000162374|ENST00000371824|ELAVL4;ENSG00000196361|ENST00000359227|ELAVL3;nc|ENSG00000162374|P26378-5|ELAVL4;nc|ENSG00000162374|P26378-1|ELAVL4;nc|ENSG00000162374|P26378-3|ELAVL4;nc|ENSG00000162374|P26378|ELAVL4	ENST00000492299.1_1_1:50610640-50645245:+|nuORF	ENST00000492299.1_1_1:50610640-50645245:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.20263671875	2	554.758223	1107.50189	0.44609	0.00024747	-0.00018841	-1.0452E-07	0.4459	0.00024737	554.7580430633109	37.697	0.71188	37.697	37.417	38.129	0					28	24	2	0	0	0	0.25376	1	6574	6574		6.2058	0	1	26771			14764	318	9666	9779	20264	20264					-0.04755681676488166
NYLPQNMTQ	9	Unmodified	_NYLPQNMTQ_					0	0	0		ENST00000492299.1_1_1:50610640-50645245:+|nuORF;ELAVL4|p.S199Kfs*53|1|0.61|ENSG00000162374|chr1:50195646-50195647|-/A|frameshift_variant;ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000107105|Q12926-2|ELAVL2;nc|ENSG00000066044|Q15717-2|ELAVL1;ENSG00000107105|ENST00000397312|ELAVL2;nc|ENSG00000196361|Q14576-2|ELAVL3;nc|ENSG00000162374|P26378-4|ELAVL4;ENSG00000162374|ENST00000371824|ELAVL4;ENSG00000196361|ENST00000359227|ELAVL3;nc|ENSG00000162374|P26378-5|ELAVL4;nc|ENSG00000162374|P26378-1|ELAVL4;nc|ENSG00000162374|P26378-3|ELAVL4;nc|ENSG00000162374|P26378|ELAVL4	ENST00000492299.1_1_1:50610640-50645245:+|nuORF	ENST00000492299.1_1_1:50610640-50645245:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	554.758223	1107.50189	0.53566	0.00029716	-0.6233	-0.00034578	-0.087636	-4.8617E-05	554.7578446816409	37.558	0.48775	37.642	37.445	37.933	0.084476	-0.027574	-0.00035737	NaN	6.2058	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27600			14765	318	9666	9779							-0.04755681676488166
NYLQHVQL	8	Unmodified	_NYLQHVQL_					0	0	0		nc|ENSG00000125826|Q9BYM8-3|RBCK1;ENSG00000125826|ENST00000356286|RBCK1	nc|ENSG00000125826|Q9BYM8-3|RBCK1	nc|ENSG00000125826|Q9BYM8-3|RBCK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7711181640625	2	507.771991	1013.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.729	1	48.729	48.229	49.229	0								0	0	0	0.3795	1	9927	9927		28.487	3.0875	1				14766	2313	9667	9780	20265	20265					0.023205896460467557
NYLQLLVHPNP	11	Unmodified	_NYLQLLVHPNP_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.57501220703125	3	436.575067	1306.70337	0.3275	0.00014298	-0.69346	-0.00030275	-0.36596	-0.00015977	436.57471617883033	36.249	0.53447	36.249	36.077	36.611	0					35	20	3	0	0	0	0.40738	1	6181	6181		2.6312	0	1	37252			14767	2310	9668	9781	20266	20266					0.062287503515108256
NYLQLLVHPNP	11	Unmodified	_NYLQLLVHPNP_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.5748596191406	3	436.575067	1306.70337	0.066149	2.8879E-05	-0.20541	-8.9676E-05	-0.13926	-6.0797E-05	436.5749120381872	36.126	0.40617	36.208	36.049	36.455	0.081715					26	15	2	0	0	0	0.38987	1	6015	6015		6.6235	0	1	34926			14768	2310	9668	9781	20267	20267					0.062287503515108256
NYLQNGQFSR	10	Unmodified	_NYLQNGQFSR_					0	0	0		nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.8849182128906	3	409.535271	1225.58398	-0.17203	-7.0453E-05	2.0514	0.00084012	1.8794	0.00076967	409.869784929331	33.715	0.13152	33.789	33.695	33.826	0.074322					8	5	2	0	0	0	0.31816	1	5276	5276		3.3196	0.58445	1	13700			14769	5142	9669	9782	20268	20268					-0.019784432731967172
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2904663085938	2	549.290548	1096.56654	-0.043026	-2.3634E-05	0.0070997	3.8998E-06	-0.035926	-1.9734E-05	549.2904849803234	43.484	1.2703	43.484	43.231	44.502	0					119	44	4	0	0	0	7.3095E-13	2	8361	8315;8361		185.05	127.58	1	1021800			14770	4486	9670	9783	20269;20270	20270					0.022122611917893664
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.29052734375	2	549.290548	1096.56654	0.073227	4.0223E-05	0.091622	5.0327E-05	0.16485	9.055E-05	549.2905131670527	43.368	1.137	43.457	43.137	44.274	0.089233					104	40	4	0	0	0	8.9867E-09	2	8202	8160;8202		160.52	110.58	1	932990			14771	4486	9670	9783	20271;20272	20272					0.022122611917893664
NYLSIFRKF	9	Unmodified	_NYLSIFRKF_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.3318481445312	2	594.332216	1186.64988	0.26562	0.00015786	0.2071	0.00012309	0.47272	0.00028095	594.3320393661292	61.588	1.2747	61.588	61.447	62.722	0					125	59	3	0	0	0	0.0011184	1	13877	13877		121.53	73.94	1	2597600			14772	454	9671	9784	20273	20273					0.06401997639636647
NYLSIFRKF	9	Unmodified	_NYLSIFRKF_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.3323974609375	2	594.332216	1186.64988	0.20506	0.00012188	0.18576	0.00011041	0.39083	0.00023228	594.331941456995	61.537	0.87456	61.611	61.435	62.31	0.073421					111	47	3	0	0	0	0.0028522	2	13713	13713;13752		110.55	66.694	1	2771500			14773	454	9671	9784	20274;20275	20274					0.06401997639636647
NYLVLPNRI	9	Unmodified	_NYLVLPNRI_					0	0	0		nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.32470703125	2	551.324391	1100.63423	0.42243	0.0002329	0.45109	0.0002487	0.87353	0.0004816	551.3247238020789	61.464	0.3936	61.464	61.189	61.582	0					37	19	2	0	0	0	0.047633	1	13777	13777		43.858	24.601	1	1004500			14774	2021	9672	9785	20276	20276					0.08793711122621062
NYLVLPNRI	9	Unmodified	_NYLVLPNRI_					0	0	0		nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3250122070312	2	551.324391	1100.63423	0.42251	0.00023294	0.72554	0.00040001	1.1481	0.00063295	551.3247038995719	61.392	0.70666	61.466	61.143	61.85	0.073421					57	37	3	0	0	0	0.01063	1	13634	13634		65.235	39.836	1	802640			14775	2021	9672	9785	20277	20277					0.08793711122621062
NYLVRINEI	9	Unmodified	_NYLVRINEI_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.G414Vfs*16|1|0.12|ENSG00000135829|chr1:182860092-182860093|-/TCTT|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2772827148438	2	567.319306	1132.62406	0.15237	8.6441E-05	-1.383	-0.00078461	-1.2306	-0.00069816	567.8199014076624	58.8	0.45769	58.871	58.721	59.178	0.070477					25	17	3	0	0	0	0.1076	1	12877	12877		38.615	13.624	1	130500			14776	2748	9673	9786	20278	20278					0.06305103397380662
NYLVWRMVY	9	Unmodified	_NYLVWRMVY_					0	0	0		ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.31787109375	2	622.318251	1242.62195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.32	1	101.32	100.82	101.82	0								0	0	0	0.22204	1	25949	25949		14.838	4.0143	1				14777	1300	9674	9787	20279	20279					0.010343513879206512
NYMFYYVKC	9	Unmodified	_NYMFYYVKC_					0	0	0			REV__ENST00000265729.6_1_7:87835648-87835780:-|nuORF	REV__ENST00000265729.6_1_7:87835648-87835780:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.4072265625	2	615.769745	1229.52494	0.22308	0.00013736	-3.3089	-0.0020375	-3.0859	-0.0019002	615.767338992943	70.719	0.18195	70.777	70.728	70.91	0.058578					8	6	2	0	0	0	0.25051	1	16484	16484		7.9102	0.62092	1	63393	+		14778	11262	9675	9788	20280	20280					-0.08064378883364043
NYMFYYVKC	9	Unmodified	_NYMFYYVKC_					0	0	0			REV__ENST00000265729.6_1_7:87835648-87835780:-|nuORF	REV__ENST00000265729.6_1_7:87835648-87835780:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	615.769745	1229.52494	0.012384	7.6256E-06	-3.1786	-0.0019573	-3.1662	-0.0019497	615.767292154066	70.88	0.2011	70.88	70.763	70.964	0	0.051541	6.3265E-05	NaN	7.9102	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87645	+		14779	11262	9675	9788							-0.08064378883364043
NYMKWWRF	8	Unmodified	_NYMKWWRF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7994995117188	2	615.797486	1229.58042	-0.016086	-9.9055E-06	2.5082	0.0015445	2.4921	0.0015346	615.7992371156145	88.201	0.47575	88.201	88.085	88.56	0					39	17	3	0	0	0	0.52502	1	21965	21965		9.3474	1.4373	1	274870	+		14780	9323	9676	9789	20281	20281					-0.02518784580774991
NYMKWWRF	8	Unmodified	_NYMKWWRF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.8001098632812	2	615.797486	1229.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.943	1	87.943	87.443	88.443	0								0	0	0	0.38822	1	21882	21882		12.532	0.89125	1		+		14781	9323	9676	9789	20282	20282					-0.02518784580774991
NYMSGFLSLLT	11	Unmodified	_NYMSGFLSLLT_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7908325195312	2	623.312832	1244.61111	0.34318	0.00021391	-3.2018	-0.0019957	-2.8586	-0.0017818	623.310761364625	65.437	0.32991	65.437	65.286	65.616	0					22	12	2	0	0	0	0.30965	1	14990	14990		12.241	2.8575	1	149030			14782	3686	9677	9790	20283	20283					-0.001410957770076493
NYNAVFNLL	9	Unmodified	_NYNAVFNLL_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.280029296875	2	534.279649	1066.54475	0.29844	0.00015945	0.58452	0.0003123	0.88296	0.00047175	534.2798895718031	86.168	0.47855	86.168	85.959	86.438	0					40	18	3	0	0	0	0.028398	1	21331	21331		52.268	19.963	1	443250			14783	5086	9678	9791	20284	20284					0.014134564432424668
NYNAVFNLL	9	Unmodified	_NYNAVFNLL_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2796630859375	2	534.279649	1066.54475	0.60689	0.00032425	0.17476	9.3372E-05	0.78166	0.00041762	534.2796596785239	86.174	0.509	86.199	85.954	86.463	0.025169					37	18	3	0	0	0	0.003963	1	21173	21173		103.75	63.791	1	324320			14784	5086	9678	9791	20285	20285					0.014134564432424668
NYNAYESYKYP	11	Unmodified	_NYNAYESYKYP_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000075388|ENST00000168712|FGF4	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.20941162109375	3	471.210342	1410.6092	0.3372	0.00015889	-2.1137	-0.000996	-1.7765	-0.00083711	471.20918951981	66.282	0.43811	66.349	66.166	66.604	0.066872					23	16	2	0	0	0	0.40904	1	15201	15201		2.2527	0.51045	1	145310			14785	110	9679	9792	20286	20286					-0.07968433261271457
NYNDRYDEI	9	Unmodified	_NYNDRYDEI_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7827758789062	2	601.259642	1200.50473	-0.08605	-5.1738E-05	0.79029	0.00047517	0.70424	0.00042343	601.2597318137117	40.212	0.52019	40.212	40.042	40.562	0					31	18	3	0	0	0	0.11816	1	7353	7353		28.495	13.656	1	85642			14786	3356	9680	9793	20287	20287					-0.08750135017999128
NYNDRYDEI	9	Unmodified	_NYNDRYDEI_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.26025390625	2	601.259642	1200.50473	0.052389	3.15E-05	0.58823	0.00035368	0.64062	0.00038518	601.2598533178076	40.144	0.34714	40.233	40.089	40.436	0.088562					28	12	3	0	0	0	0.15482	2	7191	7191;7203		23.79	13.716	1	79386			14787	3356	9680	9793	20288;20289	20288					-0.08750135017999128
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2930297851562	2	593.292953	1184.57135	0.18563	0.00011013	0.62921	0.0003733	0.81484	0.00048344	593.2933127296764	50.205	1.3913	50.205	49.935	51.327	0					117	48	4	0	0	0	0.0011298	1	10344	10344		121.35	73.597	1	1709600			14788	753	9681	9794	20290	20290					-0.013548994561006111
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.293212890625	2	593.292953	1184.57135	0.24532	0.00014555	0.64203	0.00038091	0.88736	0.00052646	593.293270758831	50.123	0.84523	50.197	49.979	50.824	0.07312					75	29	4	0	0	0	0.0022083	1	10195	10195		114.5	74.547	1	1620100			14789	753	9681	9794	20291	20291					-0.013548994561006111
NYNFDFRSW	9	Unmodified	_NYNFDFRSW_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.7755126953125	2	624.775262	1247.53597	0.2256	0.00014095	0.26674	0.00016665	0.49234	0.0003076	624.7752311014171	68.707	0.3947	68.769	68.531	68.926	0.062126					22	14	2	0	0	0	0.1019	1	15876	15876		32.037	22.654	1	158810			14790	5471	9682	9795	20292	20292					-0.07789517193236861
NYNFDFRSW	9	Unmodified	_NYNFDFRSW_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	624.775262	1247.53597	0.20536	0.0001283	0.57051	0.00035644	0.77586	0.00048474	624.77543862352	68.794	0.39546	68.794	68.617	69.012	0	0.012206	0.00013254	NaN	32.037	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138340			14791	5471	9682	9795							-0.07789517193236861
NYNLAKMNKN	10	Unmodified	_NYNLAKMNKN_					0	0	0			REV__ENSG00000081386|ENST00000223428|ZNF510	REV__ENSG00000081386|ENST00000223428|ZNF510	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3047485351562	2	605.305872	1208.59719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.777	1	35.856	35.356	36.356	0.078827								0	0	0	0.33892	1	5900	5900		1.4819	0.41044	1		+		14792	8238	9683	9796	20293	20293					0.0012367151452963299
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF	nc|ENSG00000135486|P09651-3|HNRNPA1	nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2257080078125	2	544.225602	1086.43665	0.084645	4.6066E-05	0.17558	9.5556E-05	0.26023	0.00014162	544.2255949419852	34.881	0.741	34.881	34.676	35.417	0					56	27	3	0	0	0	0.12515	2	5730	5730;5777		27.223	16.194	1	148330			14793	147	9684	9797	20294;20295	20294					-0.10310959877983805
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF	nc|ENSG00000135486|P09651-3|HNRNPA1	nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2255859375	2	544.225602	1086.43665	0.13558	7.3787E-05	0.28853	0.00015703	0.42412	0.00023081	544.2256369092529	34.8	0.63139	34.876	34.688	35.32	0.076244					56	26	3	0	0	0	0.012041	1	5599	5599		63.961	36.332	1	135640			14794	147	9684	9797	20296	20296					-0.10310959877983805
NYPETLGRLLI	11	Unmodified	_NYPETLGRLLI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.8668823242188	2	644.86662	1287.71869	0.13442	8.6681E-05	0.22432	0.00014466	0.35874	0.00023134	644.8671284685939	71.801	0.90137	71.801	71.447	72.348	0					60	31	3	0	0	0	0.01854	2	16941	16941;16990		66.683	38.188	1	740740			14795	2436	9685	9798	20297;20298	20297					0.08633617148734629
NYPETLGRLLI	11	Unmodified	_NYPETLGRLLI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.8670043945312	2	644.86662	1287.71869	0.085813	5.5338E-05	0.36948	0.00023827	0.4553	0.00029361	644.8673019317237	71.722	0.86624	71.781	71.318	72.184	0.058578					39	30	2	0	0	0	0.014426	1	16772	16772		70.929	42.434	1	826110			14796	2436	9685	9798	20299	20299					0.08633617148734629
NYPHFFLDF	9	Unmodified	_NYPHFFLDF_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.2802734375	2	600.279649	1198.54475	0.86917	0.00052174	-0.062886	-3.7749E-05	0.80628	0.00048399	600.279487147431	80.984	0.53357	80.984	80.784	81.317	0					37	17	3	0	0	0	0.02293	1	19748	19748		56.177	33.441	1	298970			14797	5325	9686	9799	20300	20300					-0.0465854355677493
NYPHFFLDF	9	Unmodified	_NYPHFFLDF_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.27978515625	2	600.279649	1198.54475	0.62939	0.00037781	0.34611	0.00020776	0.9755	0.00058557	600.2795093629012	80.988	0.4655	81.012	80.82	81.285	0.023605					37	15	3	0	0	0	0.03918	1	19594	19594		45.7	25.246	1	263080			14798	5325	9686	9799	20301	20301					-0.0465854355677493
NYPLLLLTL	9	Unmodified	_NYPLLLLTL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.8279418945312	2	530.326068	1058.63758	0.31584	0.0001675	-0.46371	-0.00024592	-0.14787	-7.8422E-05	530.3257022516815	102.01	0.59636	102.01	101.74	102.34	0					75	43	3	0	0	0	0.14091	1	26105	26105		25.399	0	1	680650			14799	2246	9687	9800	20302	20302					0.11060961176622186
NYPLLLLTL	9	Unmodified	_NYPLLLLTL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.3258056640625	2	530.326068	1058.63758	0.49337	0.00026165	-0.53524	-0.00028385	-0.041875	-2.2207E-05	530.3256918258156	101.99	0.70361	102.03	101.72	102.42	0.042656					137	59	3	0	0	0	0.026209	2	26004	25969;26004		53.833	26.869	1	443950			14800	2246	9687	9800	20303;20304	20304					0.11060961176622186
NYPTESKEIF	10	Unmodified	_NYPTESKEIF_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.792236328125	2	614.298236	1226.58192	0.068853	4.2297E-05	-4.1378	-0.0025418	-4.0689	-0.0024995	614.29693379099	76.386	1.1809	76.426	75.975	77.156	0.03923					140	51	5	0	0	0	0.22666	1	18359	18359		30.637	7.9003	1	2558800	+		14801	10491	9688	9801	20305	20305					-0.022309168016590775
NYPVWDTQF	9	Unmodified	_NYPVWDTQF_					0	0	0		ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8136596679688	2	585.266739	1168.51892	0.63212	0.00036996	1.3954	0.00081669	2.0275	0.0011867	585.2673177500892	75.401	0.42864	75.401	75.199	75.627	0					33	16	3	0	0	0	0.003141	1	18060	18060		96.367	65.73	1	1059200			14802	3378	9689	9802	20306	20306					-0.05859437799040279
NYPVWDTQF	9	Unmodified	_NYPVWDTQF_					0	0	0		ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.266739	1168.51892	0.72441	0.00042397	1.1319	0.00066246	1.8563	0.0010864	585.2671930457827	75.371	0.4951	75.415	75.209	75.704	0.044037					25	17	2	0	0	0	0.055289	1	17903	17903		53.404	31.657	1	1095700			14803	3378	9689	9802	20307	20307					-0.05859437799040279
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7750854492188	2	581.775065	1161.53558	0.31847	0.00018528	0.027552	1.6029E-05	0.34602	0.00020131	581.7748667436648	50.43	1.237	50.43	50.18	51.417	0					75	42	4	0	0	0	0.00052627	3	10468	10423;10468;10521		131.3	93.324	1	570120			14804	5935	9690	9803	20308;20309;20310	20309					-0.03872892122444682
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.775390625	2	581.775065	1161.53558	0.5141	0.00029909	-0.024771	-1.4411E-05	0.48933	0.00028468	581.7748814099755	50.323	0.97585	50.396	50.181	51.157	0.07312					69	35	4	0	0	0	0.00087032	3	10264	10264;10306;10353		125.62	87.651	1	685100			14805	5935	9690	9803	20311;20312;20313	20311					-0.03872892122444682
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2157287597656	3	404.215761	1209.62546	0.090816	3.6709E-05	-0.05357	-2.1654E-05	0.037246	1.5055E-05	404.21565756685095	31.45	1.0917	31.45	31.215	32.307	0					151	45	6	0	0	0	0.18398	3	4739	4694;4739;4787		20.415	14.631	1	421120			14806	642	9691	9804	20314;20315;20316	20315					0.02902737486147089
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8199462890625	2	605.820004	1209.62546	0.17248	0.00010449	0.10278	6.2266E-05	0.27526	0.00016676	605.820005476678	31.445	0.74185	31.445	31.215	31.957	0					86	32	4	0	0	0	0.034936	2	4741	4698;4741		43.858	25.712	1	110740			14807	642	9691	9804	20317;20318	20318					0.02902737486147089
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8201904296875	2	605.820004	1209.62546	0.31442	0.00019048	-0.0049126	-2.9761E-06	0.30951	0.00018751	605.8199532739047	31.406	0.61612	31.48	31.284	31.9	0.073782					75	29	4	0	0	0	0.064247	2	4608	4567;4608		36.127	17.981	1	167890			14808	642	9691	9804	20319;20320	20320					0.02902737486147089
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2158203125	3	404.215761	1209.62546	-0.27103	-0.00010956	0.29308	0.00011847	0.022045	8.911E-06	404.21585114599037	31.409	0.97876	31.482	31.244	32.223	0.07378					128	45	6	0	0	0	0.19307	2	4600	4600;4644		19.362	14.833	1	573490			14809	642	9691	9804	20321;20322	20321					0.02902737486147089
NYQMNDSSWV	10	Unmodified	_NYQMNDSSWV_					0	0	0		nc|ENSG00000205189|Q96DT7-4|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;ZBTB10|p.K777Nfs*13|1|0.24|ENSG00000205189|chr8:80519238-80519238|A/-|frameshift_variant;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10	nc|ENSG00000205189|Q96DT7-4|ZBTB10	nc|ENSG00000205189|Q96DT7-4|ZBTB10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2571411132812	2	622.256045	1242.49754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.139	1	99.182	98.682	99.682	0.042839								0	0	0	0.33711	1	25126	25126		3.5965	0.60125	1				14810	5509	9692	9805	20323	20323					-0.11401190890069302
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.8037719726562	2	557.803823	1113.59309	0.070728	3.9452E-05	-0.10453	-5.831E-05	-0.033807	-1.8858E-05	557.8037094900166	33.37	0.65779	33.37	33.248	33.906	0					48	23	4	0	0	0	0.047633	1	5307	5307		43.858	34.475	1	71390			14811	3290	9693	9806	20324	20324					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8038330078125	2	557.803823	1113.59309	0.19852	0.00011074	-0.16648	-9.2862E-05	0.032043	1.7874E-05	557.8036834333363	33.332	0.40242	33.406	33.262	33.665	0.074322					37	15	3	0	0	0	0.15282	2	5159	5159;5207		24.021	18.289	1	77989			14812	3290	9693	9806	20325;20326	20325					0.040839500831452824
NYQRKLEV	8	Unmodified	_NYQRKLEV_					0	0	0			REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3836669921875	2	525.290548	1048.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.593	1	60.666	60.166	61.166	0.073421								0	0	0	0.38822	1	13401	13401		2.0598	0.21551	1		+		14813	12797	9694	9807	20327	20327					0.04420261191808095
NYQRLFDFF	9	Unmodified	_NYQRLFDFF_					0	0	0		nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000560616.5_3_15:91450651-91453805:+|nuORF;ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8125	2	625.303655	1248.59276	0.55632	0.00034787	-1.3355	-0.00083509	-0.77917	-0.00048722	625.3023711295465	80.069	0.50694	80.069	79.897	80.403	0					39	16	4	0	0	0	0.25052	1	19545	19545		8.7454	5.1489	1	458390			14814	7583	9695	9808	20328	20328					-0.021594696367174038
NYQRLFDFF	9	Unmodified	_NYQRLFDFF_					0	0	0		nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000560616.5_3_15:91450651-91453805:+|nuORF;ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.3034057617188	2	625.303655	1248.59276	0.48254	0.00030174	-1.0372	-0.00064854	-0.55461	-0.0003468	625.3026480465473	80.086	0.58806	80.113	79.851	80.439	0.026436					44	20	3	0	0	0	0.080641	1	19343	19343		51.63	39.99	1	484880			14815	7583	9695	9808	20329	20329					-0.021594696367174038
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2930908203125	2	556.292756	1110.57096	0.52656	0.00029292	-0.37525	-0.00020875	0.15131	8.4172E-05	556.2927647430088	76.035	0.31564	76.035	75.937	76.253	0					41	23	2	0	0	0	0.00034446	3	18283	18240;18283;18292		134.3	89.889	1	2029100			14816	2294	9696	9809	20330;20331;20332	20331					0.020097256147437292
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2933349609375	2	556.292756	1110.57096	0.61939	0.00034456	-0.1921	-0.00010686	0.42729	0.0002377	556.2927836100857	76.064	0.33627	76.103	75.921	76.257	0.039238					49	22	3	0	0	0	8.9172E-06	3	18113	18069;18113;18128		149.91	96.338	1	1702300			14817	2294	9696	9809	20333;20334;20335	20334					0.020097256147437292
NYRCFGSFRA	10	Unmodified	_NYRCFGSFRA_					0	0	0		nc|ENSG00000242019|Q8N743|KIR3DL3;ENSG00000242019|ENST00000291860|KIR3DL3	nc|ENSG00000242019|Q8N743|KIR3DL3	nc|ENSG00000242019|Q8N743|KIR3DL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5260009765625	3	407.52583	1219.55566	0.20973	8.5472E-05	0.17283	7.0435E-05	0.38257	0.00015591	407.52584116762546	55.489	0.56893	55.554	55.353	55.922	0.065128					56	20	5	0	0	0	0.40917	1	11848	11848		10.899	3.29	1	358850			14818	5649	9697	9810	20336	20336					-0.04533464454107161
NYRDTFFNL	9	Unmodified	_NYRDTFFNL_					0	0	0		nc|ENSG00000170340|Q9NY97-2|B3GNT2;ENSG00000170340|ENST00000301998|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.302001953125	2	595.285463	1188.55637	0.67224	0.00040018	1.3507	0.00080403	2.0229	0.0012042	595.2863391949011	66.093	0.68394	66.093	65.822	66.506	0					39	24	2	0	0	0	0.0056336	4	15221	15221;15263;15271;15312		80.676	47.231	1	557680			14819	4388	9698	9811	20337;20338;20339;20340	20337					-0.030363465333948625
NYRDTFFNL	9	Unmodified	_NYRDTFFNL_					0	0	0		nc|ENSG00000170340|Q9NY97-2|B3GNT2;ENSG00000170340|ENST00000301998|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.302001953125	2	595.285463	1188.55637	0.43333	0.00025796	1.0263	0.00061093	1.4596	0.00086888	595.286262631843	66.04	0.51472	66.107	65.939	66.453	0.066872					49	18	4	0	0	0	0.015341	3	15079	15030;15079;15126		61.602	36.611	1	449290			14820	4388	9698	9811	20341;20342;20343	20342					-0.030363465333948625
NYSDVMSKLGF	11	Unmodified	_NYSDVMSKLGF_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.3021240234375	2	630.800088	1259.58562	-0.11178	-7.0512E-05	1.1392	0.00071858	1.0274	0.00064807	630.8005235045088	73.201	0.25683	73.201	73.027	73.284	0					15	8	2	0	0	0	0.2611	1	17400	17400		37.251	22.846	1	125150			14821	404	9699	9812	20344	20344					-0.033785702994691746
NYSIIPYLL	9	Unmodified	_NYSIIPYLL_					0	0	0		nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;ENST00000533746.1_1_11:20127056-20139801:+|nuORF;nc|ENSG00000166833|Q8IVL1-7|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2	nc|ENSG00000166833|Q8IVL1-5|NAV2	nc|ENSG00000166833|Q8IVL1-5|NAV2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3341674804688	2	548.307875	1094.6012	0.30586	0.00016771	0.73428	0.00040261	1.0401	0.00057032	548.308297860521	95.524	0.44453	95.563	95.364	95.808	0.038872					26	20	2	0	0	0	0.14331	1	24049	24049		36.127	0	1	279810			14822	4182	9700	9813	20345	20345					0.05768084279907271
NYSNIRFQF	9	Unmodified	_NYSNIRFQF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.7933959960938	2	594.793455	1187.57236	0.37308	0.0002219	-1.1469	-0.00068217	-0.77383	-0.00046027	594.792592155072	60.591	1.1663	60.591	60.31	61.477	0					118	41	4	0	0	0	0.00066972	3	13535	13519;13535;13582		128.93	83.233	1	1000600			14823	2972	9701	9814	20346;20347;20348	20347					-0.01392640296535319
NYSNIRFQF	9	Unmodified	_NYSNIRFQF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.7935180664062	2	594.793455	1187.57236	0.11034	6.5631E-05	-0.71125	-0.00042305	-0.60091	-0.00035742	594.7928136025814	60.536	1.1508	60.609	60.263	61.414	0.073421					99	39	4	0	0	0	0.0034159	3	13372	13350;13372;13424		107.1	65.144	1	1001300			14824	2972	9701	9814	20349;20350;20351	20350					-0.01392640296535319
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.7615356445312	2	583.761289	1165.50803	0.66208	0.0003865	-0.13272	-7.7479E-05	0.52936	0.00030902	583.7611459200906	70.774	0.91577	70.774	70.531	71.447	0					79	31	4	0	0	0	0.0016252	1	16674	16674		118.07	74.296	1	1127300			14825	3612	9702	9815	20352	20352					-0.0681084017332978
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.7615966796875	2	583.761289	1165.50803	0.90784	0.00052996	-0.33072	-0.00019306	0.57712	0.0003369	583.7610359207254	70.664	0.82146	70.724	70.559	71.38	0.060562					77	31	4	0	0	0	2.2639E-07	1	16494	16494		142.08	93.734	1	1032400			14826	3612	9702	9815	20353	20353					-0.0681084017332978
NYSQYFLRIF	10	Unmodified	_NYSQYFLRIF_					0	0	0		L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|24|3|anti-sense	L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|24|3|anti-sense	L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|24|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.90069580078125	3	450.89955	1349.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.647	1	64.647	64.147	65.147	0								0	0	0	0.33296	1	14777	14777		8.4443	2.921	1				14827	7390	9703	9816	20354	20354					0.015970614601883426
NYSRNFSSF	9	Unmodified	_NYSRNFSSF_					0	0	0		PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant;PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2	PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant	PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.253662109375	2	561.254163	1120.49377	-0.11079	-6.2183E-05	2.0472	0.001149	1.9364	0.0010868	561.2538875659429	44.209	0.96389	44.209	43.945	44.909	0					72	33	3	0	0	0	0.03918	1	8545	8545		45.7	20.709	1	100230			14828	2627	9704	9817	20355	20355					-0.061654926015989986
NYSRNFSSF	9	Unmodified	_NYSRNFSSF_					0	0	0		PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant;PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2	PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant	PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2539672851562	2	561.254163	1120.49377	0.1029	5.7752E-05	1.7298	0.00097087	1.8327	0.0010286	561.2537544537441	44.112	0.93056	44.201	43.95	44.881	0.088921					57	32	3	0	0	0	0.056368	1	8388	8388		41.956	16.965	1	114280			14829	2627	9704	9817	20356	20356					-0.061654926015989986
NYSRVYVSGW	10	Unmodified	_NYSRVYVSGW_					0	0	0		ENST00000603675.1_1_3:178211407-178211449:-|nuORF;ENST00000583752.1_1_17:38524354-38524411:+|nuORF	ENST00000603675.1_1_3:178211407-178211449:-|nuORF	ENST00000603675.1_1_3:178211407-178211449:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7999267578125	2	615.798737	1229.58292	-0.13258	-8.1641E-05	0.67928	0.0004183	0.5467	0.00033666	615.7990837623549	88.856	1.1858	88.856	88.46	89.646	0					74	28	3	0	0	0	0.43972	1	22093	22093		6.7232	2.7788	1	225220			14830	7230	9705	9818	20357	20357					-0.022686576420937854
NYSRVYVSGW	10	Unmodified	_NYSRVYVSGW_					0	0	0		ENST00000603675.1_1_3:178211407-178211449:-|nuORF;ENST00000583752.1_1_17:38524354-38524411:+|nuORF	ENST00000603675.1_1_3:178211407-178211449:-|nuORF	ENST00000603675.1_1_3:178211407-178211449:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	615.798737	1229.58292	-0.13258	-8.1641E-05	0.67928	0.0004183	0.5467	0.00033666	615.7990837623549	88.856	1.1858	88.856	88.46	89.646	0	0.090682	0.00017298	NaN	6.7232	74	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225220			14831	7230	9705	9818							-0.022686576420937854
NYSRVYVSGW	10	Unmodified	_NYSRVYVSGW_					0	0	0		ENST00000603675.1_1_3:178211407-178211449:-|nuORF;ENST00000583752.1_1_17:38524354-38524411:+|nuORF	ENST00000603675.1_1_3:178211407-178211449:-|nuORF	ENST00000603675.1_1_3:178211407-178211449:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	615.798737	1229.58292	-0.076318	-4.6997E-05	0.41894	0.00025798	0.34262	0.00021098	615.7991639517724	88.642	1.1022	88.674	88.358	89.46	0.032257	-0.090682	-0.00014766	NaN	6.7232	70	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250950			14832	7230	9705	9818							-0.022686576420937854
NYSYIFKYI	9	Unmodified	_NYSYIFKYI_					0	0	0		ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.810546875	2	605.810782	1209.60701	0.31298	0.00018961	-1.1301	-0.00068465	-0.81716	-0.00049504	605.810016513611	72.988	0.45512	72.988	72.799	73.254	0					31	15	3	0	0	0	0.026809	1	17314	17314		53.404	40.362	1	278790			14833	2067	9706	9819	20358	20358					0.01059182791573221
NYSYIFKYI	9	Unmodified	_NYSYIFKYI_					0	0	0		ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3112182617188	2	605.810782	1209.60701	0.52373	0.00031728	-0.58815	-0.00035631	-0.064423	-3.9028E-05	605.8102315826224	72.9	0.3732	72.953	72.805	73.178	0.052567					25	12	3	0	0	0	0.032232	1	17131	17131		49.527	29.113	1	178810			14834	2067	9706	9819	20359	20359					0.01059182791573221
NYSYLHCEW	9	Unmodified	_NYSYLHCEW_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.7507934570312	2	607.750398	1213.48624	0.69394	0.00042174	-1.2694	-0.00077148	-0.57546	-0.00034974	607.7503572860434	60.174	0.6751	60.174	60.045	60.72	0					52	24	3	0	0	0	0.01943	2	13432	13432;13513		58.679	31.795	1	196290			14835	4696;133	9707	9820	20360;20361	20360					-0.11195968193555927
NYSYLHCEW	9	Unmodified	_NYSYLHCEW_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7503051757812	2	607.750398	1213.48624	0.50531	0.0003071	-1.1131	-0.0006765	-0.60781	-0.00036939	607.7500915991153	60.144	0.69993	60.216	59.988	60.688	0.072342					54	24	3	0	0	0	0.047633	2	13321	13272;13321		43.858	23.405	1	170880			14836	4696;133	9707	9820	20362;20363	20363					-0.11195968193555927
NYSYLHCEW	9	Unmodified	_NYSYLHCEW_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7499389648438	2	607.750398	1213.48624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.763	1	60.836	60.336	61.336	0.073421								0	0	0	0.24643	1	13453	13453		10.074	1.9184	1				14837	4696;133	9707	9820	20364	20364					-0.11195968193555927
NYTDIKDYL	9	Unmodified	_NYTDIKDYL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.77978515625	2	572.779679	1143.5448	0.34441	0.00019727	0.18224	0.00010439	0.52666	0.00030166	572.7798020079672	62.307	0.76592	62.307	61.956	62.722	0					83	28	4	0	0	0	0.0042454	1	14073	14073		100.71	51.154	1	940100			14838	1780	9708	9821	20365	20365					-0.021225883474244256
NYTDIKDYL	9	Unmodified	_NYTDIKDYL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7800903320312	2	572.779679	1143.5448	0.32268	0.00018482	0.14085	8.0679E-05	0.46353	0.0002655	572.7798135943791	62.202	1.0325	62.275	61.798	62.83	0.073421					84	41	3	0	0	0	0.0042454	1	13892	13892		100.71	55.009	1	953510			14839	1780	9708	9821	20366	20366					-0.021225883474244256
NYTEFTQFL	9	Unmodified	_NYTEFTQFL_					0	0	0		SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant;ENSG00000115840|ENST00000422440|SLC25A12;nc|ENSG00000115840|O75746-2|SLC25A12	SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant	SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7532348632812	2	581.774396	1161.53424	0.54564	0.00031744	0.71089	0.00041358	1.2565	0.00073101	581.7738183601152	82.967	0.44312	82.967	82.757	83.2	0					27	14	3	0	0	0	0.23347	1	20358	20358		18.373	6.8784	1	69082			14840	1924	9709	9822	20367	20367					-0.04006571001832526
NYTEFTQFL	9	Unmodified	_NYTEFTQFL_					0	0	0		SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant;ENSG00000115840|ENST00000422440|SLC25A12;nc|ENSG00000115840|O75746-2|SLC25A12	SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant	SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	581.774396	1161.53424	0.52248	0.00030397	1.1071	0.00064407	1.6296	0.00094803	581.7743065111613	82.929	0.30331	82.95	82.764	83.068	0.021744	-0.0081601	0.00017713	NaN	27.223	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89411			14841	1924	9709	9822							-0.04006571001832526
NYTERGVFF	9	Unmodified	_NYTERGVFF_					0	0	0		ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2994384765625	2	566.774731	1131.53491	0.76007	0.00043079	1.1885	0.00067362	1.9486	0.0011044	566.7743730139765	80.703	1.3463	80.703	80.286	81.632	0					105	46	4	0	0	0	0.20845	1	19566	19566		21.747	1.3321	1	152280			14842	1752	9710	9823	20368	20368					-0.025597315621325833
NYTEWKFSE	9	Unmodified	_NYTEWKFSE_					0	0	0		nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2673950195312	2	602.269478	1202.5244	0.73601	0.00044327	-2.757	-0.0016605	-2.021	-0.0012172	602.2673758869121	85.216	0.41736	85.216	85.042	85.459	0					36	14	3	0	0	0	0.13369	1	21068	21068		40.239	18.702	1	273990			14843	1074	9711	9824	20369	20369					-0.06875759007198212
NYTEWLQDL	9	Unmodified	_NYTEWLQDL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.27734375	2	591.277303	1180.54005	0.64378	0.00038065	-0.52256	-0.00030898	0.12122	7.1672E-05	591.2768961459311	85.226	1.0427	85.226	84.985	86.027	0					104	42	4	0	0	0	1.8848E-17	1	21084	21084		179.28	179.28	1	2450400			14844	2316	9712	9825	20370	20370					-0.04299472490174594
NYTEWLQDL	9	Unmodified	_NYTEWLQDL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.2772827148438	2	591.277303	1180.54005	0.76141	0.0004502	-0.70293	-0.00041563	0.058477	3.4576E-05	591.2767971035856	85.271	0.86163	85.294	85.035	85.897	0.023125					103	34	4	0	0	0	1.8848E-17	1	20919	20919		179.28	179.28	1	2937700			14845	2316	9712	9825	20371	20371					-0.04299472490174594
NYTSLLVTW	9	Unmodified	_NYTSLLVTW_					0	0	0		PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1-TSPAN33|2|fusion;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|3|fusion	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.787353515625	2	548.787307	1095.56006	0.78169	0.00042898	-0.33483	-0.00018375	0.44686	0.00024523	548.7868988847923	84.921	0.48574	84.921	84.704	85.189	0					38	18	3	0	0	0	0.005983	1	20961	20961		79.596	35.738	1	247680			14846	1513	9713	9826	20372	20372					0.01610323240447542
NYTSLLVTW	9	Unmodified	_NYTSLLVTW_					0	0	0		PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1-TSPAN33|2|fusion;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|3|fusion	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7877197265625	2	548.787307	1095.56006	0.68011	0.00037323	-0.063428	-3.4809E-05	0.61668	0.00033843	548.7871333215445	84.861	0.44781	84.884	84.708	85.156	0.023125					36	19	3	0	0	0	0.0084662	2	20791	20791;20838		71.922	19.654	1	378570			14847	1513	9713	9826	20373;20374	20373					0.01610323240447542
NYTYLISILK	10	Unmodified	_NYTYLISILK_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.5376281738281	3	409.904301	1226.69108	0.18541	7.6E-05	2.2575	0.00092534	2.4429	0.0010013	409.9055543181154	33.962	0.10173	33.962	33.883	33.984	0					5	3	2	0	0	0	0.3184	1	5474	5474		1.7423	0.78	1	8006.4			14848	1510	9714	9827	20375	20375					0.08679713888500373
NYVEDIPFL	9	Unmodified	_NYVEDIPFL_					0	0	0		nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2794189453125	2	555.279315	1108.54408	0.44397	0.00024653	0.11695	6.4938E-05	0.56091	0.00031146	555.2792247949993	88.974	0.56494	88.974	88.679	89.244	0					52	22	3	0	0	0	0.0089808	2	22214	22170;22214		70.332	42.159	1	327010			14849	3863	9715	9828	20376;20377	20377					-0.005853829964735269
NYVEDIPFL	9	Unmodified	_NYVEDIPFL_					0	0	0		nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2796020507812	2	555.279315	1108.54408	0.5401	0.00029991	0.33979	0.00018868	0.87989	0.00048859	555.2792501602462	88.956	0.52393	88.989	88.749	89.273	0.032265					50	20	3	0	0	0	0.015341	2	22013	22013;22065		61.602	33.429	1	359520			14850	3863	9715	9828	20378;20379	20378					-0.005853829964735269
NYVEELVEI	9	Unmodified	_NYVEELVEI_					0	0	0		ENST00000452760.2_1_17:20516367-20517318:+|nuORF	ENST00000452760.2_1_17:20516367-20517318:+|nuORF	ENST00000452760.2_1_17:20516367-20517318:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7926025390625	2	554.282054	1106.54956	0.46681	0.00025875	-1.8985	-0.0010523	-1.4317	-0.00079354	554.7826467126619	91.494	0.3318	91.529	91.361	91.692	0.035446					16	11	2	0	0	0	0.17247	1	22822	22822		21.747	4.8044	1	59859			14851	6571	9716	9829	20380	20380					0.0005429579534848017
NYVEKGFQI	9	Unmodified	_NYVEKGFQI_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2843627929688	2	549.284931	1096.55531	0.36362	0.00019973	-0.38262	-0.00021017	-0.018997	-1.0435E-05	549.285020725154	51.468	0.40223	51.538	51.336	51.738	0.069874					27	15	2	0	0	0	0.18398	1	10615	10615		20.415	1.1575	1	129240			14852	2993	9717	9830	20381	20381					0.010894390976773138
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8171997070312	2	597.81693	1193.61931	-0.11528	-6.8915E-05	-2.8666	-0.0017137	-2.9818	-0.0017826	597.8147320246895	39.536	1.838	39.536	39.237	41.075	0					114	65	3	0	0	0	0.038996	3	7147	7136;7147;7198		45.74	20.749	1	165870			14853	4530	9718	9831	20382;20383;20384	20383					0.0302421925462113
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8165283203125	2	597.81693	1193.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.398	1	39.487	38.987	39.987	0.088562								0	0	0	0.037785	1	6986	6986		53.404	23.563	1				14854	4530	9718	9831	20385	20385					0.0302421925462113
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8168334960938	2	597.81693	1193.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.559	1	39.647	39.147	40.147	0.088562								0	0	0	0.12135	1	7034	7034		29.841	12.728	1				14855	4530	9718	9831	20386	20386					0.0302421925462113
NYVGFINYL	9	Unmodified	_NYVGFINYL_					0	0	0		nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8;ENST00000528806.5_1_14:23598711-23607206:-|nuORF;ENST00000397310.6_1_14:23596388-23599053:-|nuORF	nc|ENSG00000092068|Q9UHI5-3|SLC7A8	nc|ENSG00000092068|Q9UHI5-3|SLC7A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7824096679688	2	551.782025	1101.5495	0.5052	0.00027876	0.46829	0.00025839	0.97349	0.00053715	551.7822222622526	85.728	0.56335	85.728	85.515	86.079	0					60	23	3	0	0	0	0.00022088	1	21212	21212		136.33	81.56	1	850070			14856	1072	9719	9832	20387	20387					0.0027834058601001743
NYVGFINYL	9	Unmodified	_NYVGFINYL_					0	0	0		nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8;ENST00000528806.5_1_14:23598711-23607206:-|nuORF;ENST00000397310.6_1_14:23596388-23599053:-|nuORF	nc|ENSG00000092068|Q9UHI5-3|SLC7A8	nc|ENSG00000092068|Q9UHI5-3|SLC7A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7824096679688	2	551.782025	1101.5495	0.69001	0.00038073	0.42301	0.00023341	1.113	0.00061415	551.7820740017885	85.747	0.69908	85.772	85.529	86.228	0.025169					65	25	4	0	0	0	8.832E-06	1	21052	21052		149.99	95.221	1	972140			14857	1072	9719	9832	20388	20388					0.0027834058601001743
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.818603515625	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.669	1	87.669	87.169	88.169	0								0	0	0	0.33156	1	21800	21800		10.074	4.777	1				14858	13711	9720	9833	20389	20389					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8015747070312	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.195	1	96.195	95.695	96.695	0								0	0	0	0.33711	1	24389	24389		3.5965	0	1				14859	13711	9720	9833	20390	20390					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8182983398438	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.3	1	100.3	99.799	100.8	0								0	0	0	0.33487	1	25637	25637		6.2058	0	1				14860	13711	9720	9833	20391	20391					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8168334960938	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.64	1	100.64	100.14	101.14	0								0	0	0	0.33487	1	25743	25743		6.2058	2.6093	1				14861	13711	9720	9833	20392	20392					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.81689453125	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.39	1	104.39	103.89	104.89	0								0	0	0	0.33487	1	26859	26859		6.2058	0	1				14862	13711	9720	9833	20393	20393					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7907104492188	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.42	1	104.42	103.92	104.92	0								0	0	0	0.33487	1	26868	26868		6.2058	2.6093	1				14863	13711	9720	9833	20394	20394					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.81787109375	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.19	1	100.23	99.729	100.73	0.042839								0	0	0	0.33528	1	25447	25447		5.7319	2.1354	1				14864	13711	9720	9833	20395	20395					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.8179931640625	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.73	1	103.77	103.27	104.27	0.03791								0	0	0	0.33711	1	26502	26502		3.5965	0	1				14865	13711	9720	9833	20396	20396					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.818359375	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.08	1	104.12	103.62	104.62	0.03791								0	0	0	0.33215	1	26601	26601		9.3831	3.1773	1				14866	13711	9720	9833	20397	20397					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.8186645507812	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.67	1	104.7	104.2	105.2	0.034004								0	0	0	0.33738	1	26765	26765		3.2813	1.1953	1				14867	13711	9720	9833	20398	20398					0.011656836775273405
NYVKANYLPY	10	Unmodified	_NYVKANYLPY_					0	0	0		tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.8175659179688	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.86	1	105.89	105.39	106.39	0.029739								0	0	0	0.33487	1	27097	27097		6.2058	0	1				14868	13711	9720	9833	20399	20399					0.011656836775273405
NYVKKFQSF	9	Unmodified	_NYVKKFQSF_					0	0	0		ENST00000278882.8_1_20:29623179-29633907:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7559814453125	2	580.808574	1159.60259	0.44709	0.00025967	-0.64344	-0.00037372	-0.19636	-0.00011404	580.8081301999644	38.304	0.43794	38.304	38.101	38.539	0					21	14	2	0	0	0	0.24533	1	6763	6763		12.241	5.5175	1	62481			14869	1634	9721	9834	20400	20400					0.029177183686670105
NYVKKFQSF	9	Unmodified	_NYVKKFQSF_					0	0	0		ENST00000278882.8_1_20:29623179-29633907:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7569580078125	2	580.808574	1159.60259	0.53608	0.00031136	-0.26231	-0.00015235	0.27376	0.000159	580.8084428109047	38.171	0.36149	38.258	38.073	38.435	0.08688					31	13	3	0	0	0	0.25376	1	6635	6635		6.2058	0.9089	1	68424			14870	1634	9721	9834	20401	20401					0.029177183686670105
NYVQQRPV	8	Unmodified	_NYVQQRPV_					0	0	0			REV__ENST00000318522.9_1_2:42552635-42552665:+|nuORF	REV__ENST00000318522.9_1_2:42552635-42552665:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2419128417969	2	502.269616	1002.52468	0.34739	0.00017448	0.02845	1.429E-05	0.37584	0.00018877	502.26953130915246	38.418	0.32367	38.505	38.358	38.682	0.08688					18	11	2	0	0	0	0.3576	1	6739	6739		2.3027	0	1	20400	+		14871	11387	9722	9835	20402	20402					0.023517055032925782
NYVVIGTCTF	10	Unmodified	_NYVVIGTCTF_					0	0	0		ENST00000548994.1_1_12:102509600-102512308:-|nuORF;ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000548994.1_1_12:102509600-102512308:-|nuORF	ENST00000548994.1_1_12:102509600-102512308:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7741088867188	2	558.773342	1115.53213	0.59156	0.00033055	0.55172	0.00030829	1.1433	0.00063884	558.7735897576208	77.228	0.8313	77.262	76.991	77.822	0.034485					43	34	2	0	0	0	0.27736	1	18532	18532		24.991	8.8419	1	670800			14872	813	9723	9836	20403	20403					-0.02101323011288514
NYYEATQTI	9	Unmodified	_NYYEATQTI_					0	0	0		nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7249145507812	2	551.756204	1101.49785	0.26674	0.00014717	0.76295	0.00042096	1.0297	0.00056814	551.7564221528661	51.51	0.26499	51.51	51.417	51.682	0					14	8	2	0	0	0	0.22179	1	10811	10811		21.59	10.791	1	85558			14873	2391	9724	9837	20404	20404					-0.0488344789855546
NYYEATQTI	9	Unmodified	_NYYEATQTI_					0	0	0		nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	551.756204	1101.49785	0.43198	0.00023835	1.2326	0.00068009	1.6646	0.00091844	551.7568418980173	51.443	0.24944	51.513	51.336	51.585	0.069878	0.0014119	0.00016354	NaN	21.59	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69373			14874	2391	9724	9837							-0.0488344789855546
NYYFGVYLAI	10	Unmodified	_NYYFGVYLAI_					0	0	0			REV__nc|ENSG00000103546|P23975-3|SLC6A2	REV__nc|ENSG00000103546|P23975-3|SLC6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.8115234375	2	611.810782	1221.60701	0.66998	0.0004099	0.90194	0.00055182	1.5719	0.00096172	611.8112180801687	80.096	0.70193	80.096	79.897	80.598	0					40	23	2	0	0	0	0.37232	2	19522	19450;19522		14.838	4.6181	1	661110	+		14875	8484	9725	9838	20405;20406	20406					0.0050718279157990764
NYYFGVYLAI	10	Unmodified	_NYYFGVYLAI_					0	0	0			REV__nc|ENSG00000103546|P23975-3|SLC6A2	REV__nc|ENSG00000103546|P23975-3|SLC6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.8109130859375	2	611.810782	1221.60701	0.4701	0.00028761	0.88325	0.00054038	1.3534	0.000828	611.8113193364819	80.098	0.59803	80.124	79.911	80.509	0.026436					55	21	4	0	0	0	0.3077	1	19312	19312		21.747	5.5975	1	483300	+		14876	8484	9725	9838	20407	20407					0.0050718279157990764
NYYKVNWTF	9	Unmodified	_NYYKVNWTF_					0	0	0		ENST00000518345.1_1_8:109254078-109254135:-|nuORF	ENST00000518345.1_1_8:109254078-109254135:-|nuORF	ENST00000518345.1_1_8:109254078-109254135:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7984008789062	2	617.798206	1233.58186	0.048396	2.9899E-05	0.22411	0.00013846	0.27251	0.00016836	617.798196395857	64.366	0.55414	64.366	64.165	64.719	0					47	18	4	0	0	0	0.02143	2	14681	14681;14739		57.249	42.844	1	332820			14877	6943	9726	9839	20408;20409	20408					-0.02558872011013591
NYYKVNWTF	9	Unmodified	_NYYKVNWTF_					0	0	0		ENST00000518345.1_1_8:109254078-109254135:-|nuORF	ENST00000518345.1_1_8:109254078-109254135:-|nuORF	ENST00000518345.1_1_8:109254078-109254135:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.7984008789062	2	617.798206	1233.58186	0.020659	1.2763E-05	0.35525	0.00021947	0.37591	0.00023224	617.7983287605018	64.275	0.65106	64.346	64.143	64.794	0.071022					50	23	3	0	0	0	0.0077293	2	14519	14519;14569		74.2	57.087	1	479730			14878	6943	9726	9839	20410;20411	20410					-0.02558872011013591
NYYPNSFGAP	10	Unmodified	_NYYPNSFGAP_					0	0	0		ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2501220703125	2	565.251089	1128.48762	-0.25587	-0.00014463	-2.9351	-0.0016591	-3.191	-0.0018037	565.2496627331352	24.806	0.36592	24.806	24.662	25.028	0					36	25	2	0	0	0	0.44727	1	2787	2787		5.2969	0.066215	1	35546			14879	2159	9727	9840	20412	20412					-0.07148010833134322
PAAAAPGVPRS	11	Unmodified	_PAAAAPGVPRS_					0	0	0		ENSG00000179111|ENST00000541682|HES7	ENSG00000179111|ENST00000541682|HES7	ENSG00000179111|ENST00000541682|HES7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.27789306640625	2	497.277441	992.540328	-2.1615E-05	-1.0748E-08	0.30167	0.00015002	0.30165	0.00015001	497.2774972764036	26.161	0.42774	26.252	26.092	26.52	0.091507					69	37	2	0	0	0	0.41242	1	3089	3089		1.4819	0.28856	1	41107			14880	4765	9728	9841	20413	20413					0.04375992020334252
PAAHSPHP	8	Unmodified	_PAAHSPHP_					0	0	0		ENST00000497677.5_1_2:219264813-219268311:+|nuORF	ENST00000497677.5_1_2:219264813-219268311:+|nuORF	ENST00000497677.5_1_2:219264813-219268311:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.2040100097656	2	407.203744	812.392936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.813	1	76.813	76.313	77.313	0								0	0	0	0.38822	1	18490	18490		0.79363	0	1				14881	6846	9729	9842	20414	20414					-0.02076479793811359
PAALRKLLHA	10	Unmodified	_PAALRKLLHA_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.34716796875	2	545.3482	1088.68185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.92	1	107.92	107.42	108.42	0								0	0	0	0.33711	1	27841	27841		3.5965	1.2938	1				14882	2476	9730	9843	20415	20415					0.14105410113461403
PAALTGRRRRQ	11	Unmodified	_PAALTGRRRRQ_					0	0	0		ENST00000261951.8_1_5:179921647-179956302:+|nuORF;ENST00000393356.5_1_5:179921647-179922490:+|nuORF	ENST00000261951.8_1_5:179921647-179956302:+|nuORF	ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3849487304688	2	641.384168	1280.75378	0.43078	0.00027629	0.81452	0.00052242	1.2453	0.00079871	641.3847123161737	97.03	0.73767	97.071	96.766	97.503	0.040855					79	36	3	0	0	0	0.41422	1	24438	24438		1.0715	0.67075	1	261220			14883	5868	9731	9844	20416	20416					0.12463717519881357
PAASDARSFPS	11	Unmodified	_PAASDARSFPS_					0	0	0		ENSG00000227345|ENST00000616448|PARG;PARG|p.N277Mfs*5|1|0.25|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	ENSG00000227345|ENST00000616448|PARG	ENSG00000227345|ENST00000616448|PARG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2662963867188	2	553.26727	1104.51999	0.071014	3.929E-05	-0.0036331	-2.0101E-06	0.067381	3.728E-05	553.2671941370072	27.49	0.62024	27.576	27.491	28.112	0.0867					92	44	3	0	0	0	0.41422	1	3529	3529		1.0715	0	1	74607			14884	5611	9732	9845	20417	20417					-0.028092234301539065
PAASSPRIPF	10	Unmodified	_PAASSPRIPF_					0	0	0		nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.328857421875	2	521.787641	1041.56073	0.31775	0.0001658	-0.23821	-0.00012429	0.079539	4.1502E-05	522.289806349883	79.074	0.23425	79.074	78.954	79.188	0					10	7	2	0	0	0	0.31691	1	19189	19189		7.2892	0	1	47396			14885	5504	9733	9846	20418	20418					0.04161162680134112
PAAVAFKIIF	10	Unmodified	_PAAVAFKIIF_					0	0	0		ENST00000578270.5_1_18:19239172-19243683:-|nuORF	ENST00000578270.5_1_18:19239172-19243683:-|nuORF	ENST00000578270.5_1_18:19239172-19243683:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.8289794921875	2	538.828778	1075.643	0.34084	0.00018365	0.14272	7.6899E-05	0.48355	0.00026055	538.8287604456298	79.006	0.8982	79.006	78.754	79.652	0					92	30	5	0	0	0	0.36288	1	19171	19171		15.847	1.2655	1	1951300			14886	7207	9734	9847	20419	20419					0.10820684759096366
PAAVAFKIIF	10	Unmodified	_PAAVAFKIIF_					0	0	0		ENST00000578270.5_1_18:19239172-19243683:-|nuORF	ENST00000578270.5_1_18:19239172-19243683:-|nuORF	ENST00000578270.5_1_18:19239172-19243683:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.828857421875	2	538.828778	1075.643	0.4647	0.0002504	-0.064543	-3.4777E-05	0.40016	0.00021562	538.8286884095743	78.946	1.1169	78.976	78.738	79.855	0.030151					96	39	4	0	0	0	0.3077	1	19000	19000		21.747	2.3076	1	2165000			14887	7207	9734	9847	20420	20420					0.10820684759096366
PAAVAFKIIF	10	Unmodified	_PAAVAFKIIF_					0	0	0		ENST00000578270.5_1_18:19239172-19243683:-|nuORF	ENST00000578270.5_1_18:19239172-19243683:-|nuORF	ENST00000578270.5_1_18:19239172-19243683:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	538.828778	1075.643	0.34084	0.00018365	0.14272	7.6899E-05	0.48355	0.00026055	538.8287604456298	79.006	0.8982	79.006	78.754	79.652	0	0.01479	0.00013031	NaN	21.747	92	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1951300			14888	7207	9734	9847							0.10820684759096366
PAAWMEIP	8	Unmodified	_PAAWMEIP_					0	0	0		ENST00000585803.1_1_18:57863810-57864818:+|nuORF	ENST00000585803.1_1_18:57863810-57864818:+|nuORF	ENST00000585803.1_1_18:57863810-57864818:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.7267761230469	2	457.725664	913.436775	-0.045844	-2.0984E-05	3.1019	0.0014198	3.0561	0.0013989	457.7269121145592	45.503	0.2831	45.589	45.418	45.701	0.085617					13	9	2	0	0	0	0.53345	1	8842	8842		5.7604	0.52976	1	41772			14889	7238	9735	9848	20421	20421					-0.023406314116868998
PAAYTHTVN	9	Unmodified	_PAAYTHTVN_					0	0	0			REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2407531738281	2	487.240524	972.466495	0.047893	2.3336E-05	0.56794	0.00027672	0.61584	0.00030006	487.2406889769922	56.102	0.78641	56.169	55.897	56.683	0.066452					59	29	3	0	0	0	0.29105	1	12128	12128		7.9102	0.62092	1	663340	+		14890	12362	9736	9849	20422	20422					-0.020839761420006653
PACACDENL	9	Unmodified	_PACACDENL_					0	0	0			REV__nc|ENSG00000147481|Q9NSN8-2|SNTG1	REV__nc|ENSG00000147481|Q9NSN8-2|SNTG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.18341064453125	2	468.183503	934.352453	-0.35031	-0.00016401	0.15938	7.462E-05	-0.19092	-8.9388E-05	468.1835423080198	40.593	0.83968	40.593	40.18	41.02	0					51	29	2	0	0	0	0.3182	1	7461	7461		4.3292	0.73274	1	100910	+		14891	9572	9737	9850	20423	20423					-0.11734950290758661
PACACDENL	9	Unmodified	_PACACDENL_					0	0	0			REV__nc|ENSG00000147481|Q9NSN8-2|SNTG1	REV__nc|ENSG00000147481|Q9NSN8-2|SNTG1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	468.183503	934.352453	-0.35031	-0.00016401	0.15938	7.462E-05	-0.19092	-8.9388E-05	468.1835423080198	40.593	0.83968	40.593	40.18	41.02	0	0.030324	-2.2874E-05	NaN	4.3292	51	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100910	+		14892	9572	9737	9850							-0.11734950290758661
PACACDENL	9	Unmodified	_PACACDENL_					0	0	0			REV__nc|ENSG00000147481|Q9NSN8-2|SNTG1	REV__nc|ENSG00000147481|Q9NSN8-2|SNTG1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.183503	934.352453	-0.35502	-0.00016621	0.21227	9.9383E-05	-0.14275	-6.6831E-05	468.1834913115575	40.443	0.69618	40.533	40.257	40.953	0.089645	-0.030324	2.6652E-05	NaN	4.3292	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82573	+		14893	9572	9737	9850							-0.11734950290758661
PACHCRDPG	9	Unmodified	_PACHCRDPG_					0	0	0		ENST00000444874.5_1_7:99950069-99950487:+|nuORF;ENST00000310771.8_1_7:99949952-99950487:+|nuORF	ENST00000444874.5_1_7:99950069-99950487:+|nuORF	ENST00000444874.5_1_7:99950069-99950487:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2640075683594	2	478.197279	954.380005	0.0036346	1.7381E-06	-2.2972	-0.0010985	-2.2935	-0.0010968	478.1964174015378	37.242	1.2159	37.242	37.086	38.302	0					57	43	3	0	0	0	0.25875	1	6426	6426		1.8442	1.0506	1	138590			14894	5999	9738	9851	20424	20424					-0.0990100223986019
PADGPELPPRE	11	Unmodified	_PADGPELPPRE_					0	0	0		ENSG00000182223|ENST00000327939|ZAR1	ENSG00000182223|ENST00000327939|ZAR1	ENSG00000182223|ENST00000327939|ZAR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2980346679688	2	589.296027	1176.5775	0.27171	0.00016012	3.5167	0.0020724	3.7884	0.0022325	589.2983155545879	39.599	0.88888	39.687	39.455	40.343	0.088562					57	34	3	0	0	0	0.40693	1	7029	7029		2.7352	0.23671	1	78412			14895	4867	9739	9852	20425	20425					-0.0037238122458802536
PAEHHSDL	8	Unmodified	_PAEHHSDL_					0	0	0			REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2102966308594	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.57	1	86.57	86.07	87.07	0								0	0	0	0.38822	1	21463	21463		2.5775	0	1		+		14896	12561	9740	9853	20426	20426					-0.05213122210182064
PAEHHSDL	8	Unmodified	_PAEHHSDL_					0	0	0			REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.209228515625	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.748	1	96.748	96.248	97.248	0								0	0	0	0.38822	1	24559	24559		2.5775	0	1		+		14897	12561	9740	9853	20427	20427					-0.05213122210182064
PAEHHSDL	8	Unmodified	_PAEHHSDL_					0	0	0			REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.209716796875	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.464	1	71.523	71.023	72.023	0.058578								0	0	0	0.38822	1	16698	16698		2.5775	0	1		+		14898	12561	9740	9853	20428	20428					-0.05213122210182064
PAEHHSDL	8	Unmodified	_PAEHHSDL_					0	0	0			REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.209228515625	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.494	1	71.552	71.052	72.052	0.058578								0	0	0	0.38822	1	16707	16707		2.5775	0	1		+		14899	12561	9740	9853	20429	20429					-0.05213122210182064
PAEWNLQSW	9	Unmodified	_PAEWNLQSW_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2980346679688	2	565.766906	1129.51926	0.37432	0.00021178	2.2163	0.0012539	2.5906	0.0014657	566.2698753531798	102.36	0.061745	102.4	102.36	102.42	0.040916					5	3	2	0	0	0	0.25579	1	26107	26107		4.3292	1.7518	1	22953			14900	4810	9741	9854	20430	20430					-0.04032018079192312
PAFPELDFRS	10	Unmodified	_PAFPELDFRS_					0	0	0		ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2798461914062	2	589.795663	1177.57677	0.15189	8.9585E-05	2.8962	0.0017081	3.0481	0.0017977	589.7970982732282	33.017	0.684	33.091	32.862	33.546	0.074322					42	26	2	0	0	0	0.31841	1	5151	5151		1.3295	0.5359	1	26474			14901	4811	9742	9855	20431	20431					-0.004911758736170668
PAFSCAPF	8	Unmodified	_PAFSCAPF_					0	0	0			REV__nc|ENSG00000213638|Q96EY9|ADAT3	REV__nc|ENSG00000213638|Q96EY9|ADAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.1915588378906	2	420.191457	838.368361	0.17423	7.3208E-05	-0.1686	-7.0843E-05	0.0056288	2.3652E-06	420.1913657841111	88.125	1.0689	88.155	87.906	88.975	0.030037					79	41	2	0	0	0	0.53345	1	21852	21852		5.7604	2.8712	1	245080	+		14902	10995	9743	9856	20432	20432					-0.0572887599155365
PAFSCAPF	8	Unmodified	_PAFSCAPF_					0	0	0			REV__nc|ENSG00000213638|Q96EY9|ADAT3	REV__nc|ENSG00000213638|Q96EY9|ADAT3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	420.191457	838.368361	0.62187	0.0002613	-0.80373	-0.00033772	-0.18186	-7.6416E-05	420.1911222759046	88.24	0.53955	88.24	88.139	88.679	0	0.042511	-0.00036469	NaN	5.7604	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196220	+		14903	10995	9743	9856							-0.0572887599155365
PAFSCAPF	8	Unmodified	_PAFSCAPF_					0	0	0			REV__nc|ENSG00000213638|Q96EY9|ADAT3	REV__nc|ENSG00000213638|Q96EY9|ADAT3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	420.191457	838.368361	0.17423	7.3208E-05	-0.1686	-7.0843E-05	0.0056288	2.3652E-06	420.1913657841111	88.125	1.0689	88.155	87.906	88.975	0.030037	-0.042511	0.00016906	NaN	5.7604	79	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245080	+		14904	10995	9743	9856							-0.0572887599155365
PAFYTHKYGY	10	Unmodified	_PAFYTHKYGY_					0	0	0		ENST00000502593.2_1_5:143131699-143132191:-|nuORF;ENSG00000076604|ENST00000262395|TRAF4	ENST00000502593.2_1_5:143131699-143132191:-|nuORF	ENST00000502593.2_1_5:143131699-143132191:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.2359619140625	2	623.798206	1245.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.031	1	15.031	14.531	15.531	0								0	0	0	0.33979	1	477	477		0.45834	0	1				14905	846	9744	9857	20433	20433					-0.031108720110296417
PAGGGPGQRR	10	Unmodified	_PAGGGPGQRR_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-3|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-3|PLEKHG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.75799560546875	2	476.757207	951.499861	0.12783	6.0943E-05	1.5396	0.00073402	1.6674	0.00079496	476.75783813540494	100.81	0.41782	100.81	100.55	100.97	0					36	25	2	0	0	0	0.46656	1	25818	25818		1.6526	0	1	41322	+		14906	8313	9745	9858	20434	20434					0.022170704205564107
PAGHIERPS	9	Unmodified	_PAGHIERPS_					0	0	0			REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF	REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.71600341796875	2	482.253966	962.493378	-0.31868	-0.00015368	-0.64013	-0.00030871	-0.95881	-0.00046239	482.253525601547	32.565	0.21798	32.639	32.534	32.752	0.07378					17	12	2	0	0	0	0.25504	1	4913	4913		4.756	0.42677	1	21561	+		14907	12124	9746	9859	20435	20435					0.010631324691871669
PAHMMELTSTD	11	Unmodified	_PAHMMELTSTD_					0	0	0			REV__ENSG00000262406|ENST00000571244|MMP12	REV__ENSG00000262406|ENST00000571244|MMP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7898559570312	2	616.767931	1231.52131	-0.21008	-0.00012957	0.56614	0.00034917	0.35605	0.0002196	616.7684693025642	37.977	0.50779	37.977	37.7	38.207	0					29	17	2	0	0	0	0.39378	2	6626	6626;6679		5.7319	2.7366	1	35554	+		14908	11114	9747	9860	20436;20437	20436					-0.08519093447921477
PAHVLQSAIA	10	Unmodified	_PAHVLQSAIA_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.22003173828125	2	503.787641	1005.56073	-0.21611	-0.00010888	-1.2226	-0.00061595	-1.4388	-0.00072483	503.7870573297266	27.79	0.18889	27.79	27.67	27.859	0					17	11	2	0	0	0	0.31783	1	3623	3623		3.9444	0	1	11365	+		14909	8731	9748	9861	20438	20438					0.05817162680114052
PAHVLQSAIA	10	Unmodified	_PAHVLQSAIA_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	503.787641	1005.56073	-0.16815	-8.4711E-05	0.54259	0.00027335	0.37444	0.00018864	503.78816929385823	27.632	0.21268	27.714	27.645	27.857	0.082132	-0.038116	0.00040016	NaN	3.9444	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23078	+		14910	8731	9748	9861							0.05817162680114052
PAIWKSIFLW	10	Unmodified	_PAIWKSIFLW_					0	0	0		ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8604125976562	2	630.860609	1259.70667	0.023843	1.5042E-05	0.79884	0.00050396	0.82268	0.000519	630.860486374832	89.623	0.9342	89.623	88.9	89.834	0					70	36	3	0	0	0	0.45627	1	22394	22394		3.5965	0.8613	1	377420			14911	3654	9749	9862	20439	20439					0.08720045196173487
PALALLSDYVL	11	Unmodified	_PALALLSDYVL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.8397216796875	2	587.839539	1173.66453	0.46821	0.00027523	-0.067558	-3.9713E-05	0.40065	0.00023552	587.8393592714654	95.973	0.51273	95.973	95.723	96.235	0					40	25	2	0	0	0	0.32422	2	24312	24275;24312		15.248	7.3383	1	252850			14912	4614	9750	9863	20440;20441	20441					0.08464024997147135
PALALLSDYVL	11	Unmodified	_PALALLSDYVL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.839111328125	2	587.839539	1173.66453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.83	1	95.869	95.369	96.369	0.038872								0	0	0	0.20782	1	24121	24121		26.268	10.421	1				14913	4614	9750	9863	20442	20442					0.08464024997147135
PALAQRTR	8	Unmodified	_PALAQRTR_					0	0	0		ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7723083496094	2	456.772326	911.530098	0.85464	0.00039038	-0.73105	-0.00033392	0.1236	5.6455E-05	456.7719197423629	84.83	0.67796	84.83	84.633	85.311	0					76	26	4	0	0	0	0.50159	1	20940	20940		12.532	0	1	1440200			14914	6715	9751	9864	20443	20443					0.07079429085740685
PALAQRTR	8	Unmodified	_PALAQRTR_					0	0	0		ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.77227783203125	2	456.772326	911.530098	0.4826	0.00022044	-0.33902	-0.00015485	0.14358	6.5585E-05	456.7720973915302	84.802	0.68126	84.825	84.631	85.312	0.023132					76	30	4	0	0	0	0.46036	1	20764	20764		18.135	0	1	1829600			14915	6715	9751	9864	20444	20444					0.07079429085740685
PALARRRIDL	10	Unmodified	_PALARRRIDL_					0	0	0			REV__nc|ENSG00000113971|Q7Z494-2|NPHP3	REV__nc|ENSG00000113971|Q7Z494-2|NPHP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8668212890625	2	590.867289	1179.72002	0.63021	0.00037237	-0.82814	-0.00048932	-0.19793	-0.00011695	590.8665320429792	98.447	0.6311	98.447	98.155	98.786	0					69	33	3	0	0	0	0.44496	1	25067	25067		5.7319	0.43497	1	353180	+		14916	8756	9752	9865	20445	20445					0.13735296028130506
PALARRRIDL	10	Unmodified	_PALARRRIDL_					0	0	0			REV__nc|ENSG00000113971|Q7Z494-2|NPHP3	REV__nc|ENSG00000113971|Q7Z494-2|NPHP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.866943359375	2	590.867289	1179.72002	0.66003	0.00038999	-0.83836	-0.00049536	-0.17833	-0.00010537	590.8665500665563	98.344	0.57869	98.385	98.145	98.724	0.041939					72	30	3	0	0	0	0.44496	1	24909	24909		5.7319	0.43497	1	417380	+		14917	8756	9752	9865	20446	20446					0.13735296028130506
PALILVKKPKL	11	Unmodified	_PALILVKKPKL_					0	0	0			REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.4270629882812	2	610.428659	1218.84277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.31	1	112.31	111.81	112.81	0								0	0	0	0.34125	1	28758	28758		0.30703	0	1		+		14918	13186	9753	9866	20447	20447					0.24209739706839173
PALISLLFFNL	11	Unmodified	_PALISLLFFNL_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|3|1|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|3|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.37158203125	2	624.373549	1246.73255	-0.073608	-4.5959E-05	-1.2055	-0.0007527	-1.2791	-0.00079865	624.3725988913737	103.54	0.28925	103.54	103.43	103.72	0					45	31	2	0	0	0	0.41309	1	26647	26647		1.3295	0	1	140060	+		14919	12670	9754	9867	20448	20448					0.11904894647818764
PALISLLFFNL	11	Unmodified	_PALISLLFFNL_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|3|1|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|3|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3709716796875	2	624.373549	1246.73255	-0.14392	-8.986E-05	-1.2391	-0.00077366	-1.383	-0.00086352	624.3728870899764	104.59	0.24601	104.59	104.45	104.69	0					28	21	2	0	0	0	0.41309	1	26921	26921		1.3295	0	1	68083	+		14920	12670	9754	9867	20449	20449					0.11904894647818764
PALQARTR	8	Unmodified	_PALQARTR_					0	0	0		ENST00000592689.5_1_2:179402342-179404892:+|nuORF	ENST00000592689.5_1_2:179402342-179404892:+|nuORF	ENST00000592689.5_1_2:179402342-179404892:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.77203369140625	2	456.772326	911.530098	0.85464	0.00039038	-0.73105	-0.00033392	0.1236	5.6455E-05	456.7719197423629	84.83	0.67796	84.83	84.633	85.311	0					76	26	4	0	0	0	0.53557	1	20895	20895		4.3292	0	1	1440200			14921	7274	9755	9868	20450	20450					0.07079429085740685
PANPHQKHAP	10	Unmodified	_PANPHQKHAP_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.8239135742188	2	548.785964	1095.55738	0.25414	0.00013947	1.264	0.00069365	1.5181	0.00083312	548.7846233411431	50.113	0.18217	50.113	50.024	50.206	0					9	6	2	0	0	0	0.31794	1	10367	10367		3.5965	0	1	33370			14922	4044	9756	9869	20451	20451					0.013419126261396741
PANRDKKK	8	Unmodified	_PANRDKKK_					0	0	0			REV__ENST00000591146.2_1_19:1203384-1203819:+|nuORF	REV__ENST00000591146.2_1_19:1203384-1203819:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.3843688964844	2	478.785433	955.556313	-0.11962	-5.7274E-05	0.96394	0.00046152	0.84432	0.00040425	478.7855307185559	86.915	0.69317	86.942	86.706	87.399	0.027573					63	30	3	0	0	0	0.3576	1	21543	21543		0.69038	0	1	854800	+		14923	12579	9757	9870	20452	20452					0.0767569825721921
PAPGAQPPVI	10	Unmodified	_PAPGAQPPVI_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.73992919921875	2	473.77146	945.528367	0.17329	8.2102E-05	-0.38079	-0.00018041	-0.2075	-9.8307E-05	473.77133738915654	59.925	0.6048	59.925	59.758	60.363	0					33	21	2	0	0	0	0.30541	1	13391	13391		19.257	0	1	72286			14924	350	9758	9871	20453	20453					0.05342375277132305
PAPGAQPPVI	10	Unmodified	_PAPGAQPPVI_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	473.77146	945.528367	-0.10099	-4.7846E-05	0.25618	0.00012137	0.15519	7.3526E-05	473.7714304774108	59.935	0.50615	60.007	59.756	60.262	0.072338	0.040866	0.00050263	NaN	19.257	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56470			14925	350	9758	9871							0.05342375277132305
PAPKKPTTPA	10	Unmodified	_PAPKKPTTPA_					0	0	0			REV__nc|ENSG00000116690|Q92954-4|PRG4	REV__nc|ENSG00000116690|Q92954-4|PRG4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.74554443359375	2	504.297842	1006.58113	-0.039175	-1.9756E-05	0.32727	0.00016504	0.2881	0.00014529	504.2979152963413	39.623	1.2834	39.712	39.341	40.625	0.088562					76	50	2	0	0	0	0.31834	1	7286	7286		1.6526	0	1	64869	+		14926	8813	9759	9872	20454	20454					0.07810333339921272
PAPPSFSPPS	10	Unmodified	_PAPPSFSPPS_					0	0	0			REV__nc|ENSG00000197948|Q86WN1-2|FCHSD1	REV__nc|ENSG00000197948|Q86WN1-2|FCHSD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2609558105469	2	492.245275	982.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.999	1	44.999	44.499	45.499	0								0	0	0	0.32828	1	8802	8802		13.906	3.8321	1		+		14927	10879	9760	9873	20455	20455					-0.015942078564762596
PAPSSLPFLL	10	Unmodified	_PAPSSLPFLL_					0	0	0		ENST00000371753.5_1_9:138902765-138903128:-|nuORF	ENST00000371753.5_1_9:138902765-138903128:-|nuORF	ENST00000371753.5_1_9:138902765-138903128:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.1349487304688	2	521.302593	1040.59063	0.36918	0.00019246	-0.27764	-0.00014474	0.09154	4.772E-05	521.3022405822409	94.696	0.77793	94.696	94.271	95.049	0					58	32	3	0	0	0	0.31731	1	23988	23988		6.2058	0	1	107970			14928	6210	9761	9874	20456	20456					0.07196101625481788
PAPSSLPFLL	10	Unmodified	_PAPSSLPFLL_					0	0	0		ENST00000371753.5_1_9:138902765-138903128:-|nuORF	ENST00000371753.5_1_9:138902765-138903128:-|nuORF	ENST00000371753.5_1_9:138902765-138903128:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.3020629882812	2	521.302593	1040.59063	0.23626	0.00012316	-0.43872	-0.00022871	-0.20246	-0.00010554	521.3022835341726	94.701	0.65893	94.739	94.343	95.002	0.038086					46	26	2	0	0	0	0.44246	1	23729	23729		6.2058	0	1	122660			14929	6210	9761	9874	20457	20457					0.07196101625481788
PAPTGPHH	8	Unmodified	_PAPTGPHH_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.2035217285156	2	407.203744	812.392936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.92	1	103.95	103.45	104.45	0.03791								0	0	0	0.38822	1	26556	26556		0.79363	0	1		+		14930	8790	9762	9875	20458	20458					-0.02076479793811359
PAPWPPPPPPR	11	Unmodified	_PAPWPPPPPPR_					0	0	0		ENST00000554659.5_1_14:68129237-68141235:-|nuORF	ENST00000554659.5_1_14:68129237-68141235:-|nuORF	ENST00000554659.5_1_14:68129237-68141235:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.55609130859375	3	403.557348	1207.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.354	1	65.354	64.854	65.854	0								0	0	0	0.33867	1	14993	14993		1.2148	0	1				14931	7117	9763	9876	20459	20459					0.0546941735949531
PAQERTLNS	9	Unmodified	_PAQERTLNS_					0	0	0			REV__nc|ENSG00000107290|Q7Z333-3|SETX	REV__nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.77685546875	2	508.261988	1014.50942	0.48198	0.00024497	-3.2926	-0.0016735	-2.8107	-0.0014285	508.2596206874281	55.157	0.37169	55.157	55.04	55.411	0					19	13	2	0	0	0	0.24929	1	11943	11943		5.7319	0	1	42479	+		14932	8591	9764	9877	20460	20460					0.0027479391542328813
PARHWETRFG	10	Unmodified	_PARHWETRFG_					0	0	0		nc|ENSG00000203797|Q99489-4|DDO;nc|ENSG00000203797|Q99489-3|DDO	nc|ENSG00000203797|Q99489-4|DDO	nc|ENSG00000203797|Q99489-4|DDO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.3186645507812	2	628.817796	1255.62104	0.18888	0.00011877	-1.5741	-0.00098983	-1.3852	-0.00087106	628.8166746927825	62.184	0.38046	62.184	62.041	62.421	0					18	13	2	0	0	0	0.45794	1	14048	14048		3.2813	1.4371	1	103160			14933	7588	9765	9878	20461	20461					0.003452730631806844
PARHWETRFG	10	Unmodified	_PARHWETRFG_					0	0	0		nc|ENSG00000203797|Q99489-4|DDO;nc|ENSG00000203797|Q99489-3|DDO	nc|ENSG00000203797|Q99489-4|DDO	nc|ENSG00000203797|Q99489-4|DDO	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	628.817796	1255.62104	0.34081	0.00021431	-1.1068	-0.00069597	-0.76598	-0.00048166	628.8169522797524	62.054	0.28087	62.128	62.029	62.31	0.073421	-0.027969	0.00031295	NaN	3.2813	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110640			14934	7588	9765	9878							0.003452730631806844
PASPFFTEL	9	Unmodified	_PASPFFTEL_					0	0	0		ENST00000562306.5_1_15:62534969-62535489:-|nuORF	ENST00000562306.5_1_15:62534969-62535489:-|nuORF	ENST00000562306.5_1_15:62534969-62535489:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7557678222656	2	504.755475	1007.4964	0.096189	4.8552E-05	0.016509	8.3332E-06	0.1127	5.6885E-05	504.75526918118834	86.926	0.94961	86.953	86.63	87.58	0.027573					127	41	4	0	0	0	0.25979	1	21528	21528		11.64	3.047	1	3650300			14935	7162	9766	9879	20462	20462					-0.007050371966784041
PASSCWWW	8	Unmodified	_PASSCWWW_					0	0	0		ENST00000259241.6_1_2:129076016-129076103:-|nuORF	ENST00000259241.6_1_2:129076016-129076103:-|nuORF	ENST00000259241.6_1_2:129076016-129076103:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7141418457031	2	511.713088	1021.41162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.786	1	26.873	26.373	27.373	0.0867								0	0	0	0.38822	1	3231	3231		0.69038	0	1				14936	5857	9767	9880	20463	20463					-0.0982268621427238
PATPVSVPL	9	Unmodified	_PATPVSVPL_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.760498046875	2	440.760561	879.506569	0.44216	0.00019488	-0.4972	-0.00021915	-0.055045	-2.4262E-05	440.76029333011513	59.717	0.5358	59.717	59.481	60.017	0					33	20	2	0	0	0	0.10067	1	13291	13291		32.305	10.559	1	190350	+		14937	10731	9768	9881	20464	20464					0.06199570528565346
PATPVSVPL	9	Unmodified	_PATPVSVPL_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.76031494140625	2	440.760561	879.506569	0.060137	2.6506E-05	-0.15813	-6.97E-05	-0.097998	-4.3194E-05	440.7603298310013	59.628	0.52568	59.7	59.491	60.016	0.072338					36	20	2	0	0	0	0.092418	1	13115	13115		34.102	5.6156	1	160520	+		14938	10731	9768	9881	20465	20465					0.06199570528565346
PAVFYLKLVK	10	Unmodified	_PAVFYLKLVK_					0	0	0		ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3704223632812	2	589.37081	1176.72707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.67	1	114.67	114.17	115.17	0								0	0	0	0.34018	1	29278	29278		0	0	1				14939	2958	9769	9882	20466	20466					0.14577215855956638
PAWELPFSW	9	Unmodified	_PAWELPFSW_					0	0	0			REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330810546875	2	566.776742	1131.53893	0.17408	9.8665E-05	-0.99566	-0.00056432	-0.82158	-0.00046565	567.2781367915592	89.102	1.2907	89.102	88.726	90.017	0					110	50	3	0	0	0	0.24635	1	22145	22145		10.824	1.4408	1	97254	+		14940	12840	9770	9883	20467	20467					-0.021576420684368713
PAWELPFSW	9	Unmodified	_PAWELPFSW_					0	0	0			REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2789916992188	2	566.776742	1131.53893	0.43907	0.00024885	0.16749	9.4932E-05	0.60656	0.00034379	567.2788725034824	67.803	1.407	67.866	67.469	68.876	0.063507					72	51	2	0	0	0	0.22344	1	15865	15865		15.847	1.0089	1	1075800	+		14941	12840	9770	9883	20468	20468					-0.021576420684368713
PAWELPFSW	9	Unmodified	_PAWELPFSW_					0	0	0			REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7755126953125	2	566.776742	1131.53893	0.27014	0.00015311	-2.325	-0.0013178	-2.0549	-0.0011646	567.2776203697342	105.55	0.50229	105.58	105.44	105.94	0.029732					81	55	2	0	0	0	0.29576	2	27053	27053;27073		7.2892	0.56607	1	63655	+		14942	12840	9770	9883	20469;20470	20469					-0.021576420684368713
PAWELPFSW	9	Unmodified	_PAWELPFSW_					0	0	0			REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2979736328125	2	566.776742	1131.53893	0.30936	0.00017534	-1.9401	-0.0010996	-1.6307	-0.00092425	567.2774455912888	104.44	0.36549	104.47	104.29	104.66	0.034004					44	34	2	0	0	0	0.25644	1	26655	26655		3.9444	0	1	50516	+		14943	12840	9770	9883	20471	20471					-0.021576420684368713
PAWELPFSW	9	Unmodified	_PAWELPFSW_					0	0	0			REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2974853515625	2	566.776742	1131.53893	0.34322	0.00019453	-2.2032	-0.0012487	-1.86	-0.0010542	567.2776260450884	103.37	0.23328	103.41	103.25	103.48	0.03791					34	24	2	0	0	0	0.25174	1	26379	26379		7.2892	0.56607	1	54594	+		14944	12840	9770	9883	20472	20472					-0.021576420684368713
PAWELPFSW	9	Unmodified	_PAWELPFSW_					0	0	0			REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.296875	2	566.776742	1131.53893	0.43865	0.00024861	-2.0717	-0.0011742	-1.6331	-0.0009256	566.7746188193179	100.15	0.60941	100.19	100.02	100.63	0.042831					53	33	2	0	0	0	0.24635	1	25405	25405		10.824	2.9138	1	67598	+		14945	12840	9770	9883	20473	20473					-0.021576420684368713
PAWELPFSW	9	Unmodified	_PAWELPFSW_					0	0	0			REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2977294921875	2	566.776742	1131.53893	0.48725	0.00027616	-2.099	-0.0011896	-1.6117	-0.00091348	566.773931768264	98.767	0.076157	98.809	98.782	98.858	0.041931					5	4	2	0	0	0	0.25281	1	25023	25023		6.7232	1.4263	1	33877	+		14946	12840	9770	9883	20474	20474					-0.021576420684368713
PAYPVPGAL	9	Unmodified	_PAYPVPGAL_					0	0	0		ENST00000541676.5_2_16:84213598-84214742:-|nuORF	ENST00000541676.5_2_16:84213598-84214742:-|nuORF	ENST00000541676.5_2_16:84213598-84214742:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.7474670410156	2	442.747453	883.480354	0.14418	6.3834E-05	0.088099	3.9006E-05	0.23228	0.00010284	442.7474342684688	69.459	0.68382	69.521	69.233	69.917	0.062126					50	24	3	0	0	0	0.18003	1	16099	16099		20.871	0	1	206400			14947	7064	9771	9884	20475	20475					0.0339530135709083
PAYRHLFCPD	10	Unmodified	_PAYRHLFCPD_					0	0	0		DECR2|p.S84Wfs*17|1|0.26|ENSG00000242612|chr16:407468-407471|CTCT/-|frameshift_variant;nc|ENSG00000242612|Q9NUI1-2|DECR2;ENSG00000242612|ENST00000219481|DECR2	DECR2|p.S84Wfs*17|1|0.26|ENSG00000242612|chr16:407468-407471|CTCT/-|frameshift_variant	DECR2|p.S84Wfs*17|1|0.26|ENSG00000242612|chr16:407468-407471|CTCT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2313232421875	3	406.862331	1217.56516	0.24131	9.818E-05	2.6106	0.0010622	2.8519	0.0011603	406.8634979340332	34.525	0.4188	34.525	34.377	34.796	0					20	16	2	0	0	0	0.31829	1	5678	5678		0.77653	0	1	13712			14948	272	9772	9885	20476	20476					-0.034916961686121795
PCARGWGGGGA	11	Unmodified	_PCARGWGGGGA_					0	0	0			REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7243347167969	2	494.724518	987.434483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.243	1	13.243	12.743	13.743	0								0	0	0	0.34212	1	182	182		0	0	1		+		14949	11684	9773	9886	20477	20477					-0.05973667096770896
PCCRLLLH	8	Unmodified	_PCCRLLLH_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7533874511719	2	477.754233	953.493912	-0.060055	-2.8692E-05	-1.5774	-0.00075359	-1.6374	-0.00078229	477.7533985432857	16.638	0.17208	16.716	16.642	16.814	0.077806					26	21	2	0	0	0	0.54097	1	699	699		0.69038	0	1	15628	+		14950	12789	9774	9887	20478	20478					0.015305125930353825
PCCRLLLH	8	Unmodified	_PCCRLLLH_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	477.754233	953.493912	-0.6495	-0.0003103	-0.91201	-0.00043572	-1.5615	-0.00074602	477.7535847426879	16.638	0.14955	16.638	16.584	16.734	0	-0.038676	0.00024887	NaN	0.69038	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13825	+		14951	12789	9774	9887							0.015305125930353825
PCCRLLLH	8	Unmodified	_PCCRLLLH_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	477.754233	953.493912	-0.060055	-2.8692E-05	-1.5774	-0.00075359	-1.6374	-0.00078229	477.7533985432857	16.638	0.17208	16.716	16.642	16.814	0.077806	0.038676	-0.00038688	NaN	0.69038	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15628	+		14952	12789	9774	9887							0.015305125930353825
PCLQGTILSE	10	Unmodified	_PCLQGTILSE_					0	0	0		ENST00000589204.1_1_18:56196243-56204256:-|nuORF;ENSG00000198796|ENST00000361673|ALPK2	ENST00000589204.1_1_18:56196243-56204256:-|nuORF	ENST00000589204.1_1_18:56196243-56204256:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7899780273438	2	530.7708	1059.52705	0.54411	0.0002888	0.36127	0.00019175	0.90539	0.00048055	530.7711302851071	85.423	0.84852	85.423	84.957	85.806	0					66	34	3	0	0	0	0.41688	1	21167	21167		10.074	0	1	702770			14953	5408	9775	9888	20479	20479					-0.00033626873891989817
PCPFNAMFH	9	Unmodified	_PCPFNAMFH_					0	0	0			REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.22802734375	2	532.228048	1062.44154	-0.24493	-0.00013036	0.47633	0.00025352	0.2314	0.00012316	532.2282300803616	21.563	0.53869	21.563	21.411	21.95	0					156	51	5	0	0	0	0.31496	1	1893	1893		4.756	2.4533	1	143590	+		14954	10510	9776	9889	20480	20480					-0.08718070540589906
PCPFNAMFH	9	Unmodified	_PCPFNAMFH_					0	0	0			REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.228048	1062.44154	-0.24493	-0.00013036	0.47633	0.00025352	0.2314	0.00012316	532.2282300803616	21.563	0.53869	21.563	21.411	21.95	0	0.048438	0.00019203	NaN	4.756	156	51	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143590	+		14955	10510	9776	9889							-0.08718070540589906
PCPGARHH	8	Unmodified	_PCPGARHH_					0	0	0			REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF	REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.7091979980469	2	437.708671	873.402789	0.40607	0.00017774	1.0144	0.00044403	1.4205	0.00062177	437.70906362989484	78.8	0.56311	78.8	78.625	79.188	0					32	19	2	0	0	0	0.54081	2	19101	19101;19154		0.79363	0	1	319220	+		14956	11919	9777	9890	20481;20482	20481					-0.038976150600888104
PCPGARHH	8	Unmodified	_PCPGARHH_					0	0	0			REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF	REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.70941162109375	2	437.708671	873.402789	0.75188	0.00032911	0.73222	0.0003205	1.4841	0.0006496	437.7089535055455	79.671	0.56974	79.671	79.452	80.022	0					34	19	2	0	0	0	0.54081	1	19342	19342		0.79363	0	1	156660	+		14957	11919	9777	9890	20483	20483					-0.038976150600888104
PCPGARHH	8	Unmodified	_PCPGARHH_					0	0	0			REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF	REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.70953369140625	2	437.708671	873.402789	0.19847	8.6874E-05	1.2383	0.000542	1.4367	0.00062887	437.7091893687836	79.578	0.79798	79.604	79.362	80.16	0.026436					44	28	2	0	0	0	0.54081	1	19174	19174		0.79363	0	1	160990	+		14958	11919	9777	9890	20484	20484					-0.038976150600888104
PCPGARHH	8	Unmodified	_PCPGARHH_					0	0	0			REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF	REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	437.708671	873.402789	0.75188	0.00032911	0.73222	0.0003205	1.4841	0.0006496	437.7089535055455	79.671	0.56974	79.671	79.452	80.022	0	0.033534	-0.00020169	NaN	0.79363	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156660	+		14959	11919	9777	9890							-0.038976150600888104
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8779296875	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.59	1	22.59	22.09	23.09	0								0	0	0	0.34125	1	2175	2175		0.08335	0	1		+		14960	8951	9778	9891	20485	20485					0.018577436626628696
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8777770996094	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.281	1	24.281	23.781	24.781	0								0	0	0	0.34125	1	2640	2640		0.08335	0	1		+		14961	8951	9778	9891	20486	20486					0.018577436626628696
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.877685546875	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.562	1	24.562	24.062	25.062	0								0	0	0	0.34125	1	2721	2721		0.08335	0	1		+		14962	8951	9778	9891	20487	20487					0.018577436626628696
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87799072265625	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.862	1	25.862	25.362	26.362	0								0	0	0	0.33873	1	3096	3096		0.40827	0.17242	1		+		14963	8951	9778	9891	20488	20488					0.018577436626628696
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8782043457031	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.328	1	26.328	25.828	26.828	0								0	0	0	0.34125	1	3229	3229		0.08335	0	1		+		14964	8951	9778	9891	20489	20489					0.018577436626628696
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8779296875	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.298	1	23.4	22.9	23.9	0.10178								0	0	0	0.34125	1	2254	2254		0.08335	0	1		+		14965	8951	9778	9891	20490	20490					0.018577436626628696
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.87774658203125	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.406	1	24.506	24.006	25.006	0.099739								0	0	0	0.34125	1	2550	2550		0.08335	0	1		+		14966	8951	9778	9891	20491	20491					0.018577436626628696
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.87811279296875	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.387	1	26.479	25.979	26.979	0.091507								0	0	0	0.34125	1	3116	3116		0.08335	0	1		+		14967	8951	9778	9891	20492	20492					0.018577436626628696
PCPSAQFQVVK	11	Unmodified	_PCPSAQFQVVK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778076171875	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.923	1	27.01	26.51	27.51	0.0867								0	0	0	0.34125	1	3270	3270		0.08335	0	1		+		14968	8951	9778	9891	20493	20493					0.018577436626628696
PCPVGHMPNL	10	Unmodified	_PCPVGHMPNL_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.75390625	2	532.75443	1063.49431	0.35456	0.00018889	-0.83632	-0.00044556	-0.48176	-0.00025666	532.7538437571174	38.057	1.3414	38.057	37.577	38.918	0					75	47	2	0	0	0	0.43972	1	6767	6767		6.7232	0.51738	1	42755	+		14969	10841	9779	9892	20494	20494					-0.03490112477766161
PCPVGHMPNL	10	Unmodified	_PCPVGHMPNL_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7544555664062	2	532.75443	1063.49431	0.48733	0.00025963	-0.93921	-0.00050037	-0.45188	-0.00024074	532.7538364556902	37.999	1.11	38.083	37.57	38.68	0.084476					69	39	2	0	0	0	0.43972	1	6618	6618		6.7232	0.51738	1	42703	+		14970	10841	9779	9892	20495	20495					-0.03490112477766161
PCSVLFDALF	10	Unmodified	_PCSVLFDALF_					0	0	0			REV__ENST00000473016.1_1_2:74129666-74129852:+|nuORF	REV__ENST00000473016.1_1_2:74129666-74129852:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2788696289062	2	556.27826	1110.54197	0.67489	0.00037542	-0.20821	-0.00011582	0.46668	0.0002596	556.277901206255	98.975	0.78462	98.975	98.701	99.485	0					126	51	3	0	0	0	0.41688	1	25303	25303		10.074	0.72649	1	607750	+		14971	12039	9780	9893	20496	20496					-0.008881350059482429
PCTLTQARA	9	Unmodified	_PCTLTQARA_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7496337890625	2	480.750201	959.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.843	1	28.843	28.343	29.343	0								0	0	0	0.28724	1	3959	3959		1.6526	0	1				14972	1146	9781	9894	20497	20497					0.004486568772449573
PCVKKVMKR	9	Unmodified	_PCVKKVMKR_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-7|WNK1	REV__nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.82470703125	2	544.825189	1087.63583	0.57658	0.00031413	-0.80931	-0.00044093	-0.23274	-0.0001268	544.8246071816435	92.61	0.60027	92.647	92.371	92.971	0.03653					32	21	2	0	0	0	0.33704	1	23171	23171		1.8442	1.1539	1	156540	+		14973	12750	9782	9895	20498	20498					0.09551305615354977
PDEELFCF	8	Unmodified	_PDEELFCF_					0	0	0			REV__ENST00000481389.1_1_2:188348803-188361638:-|nuORF	REV__ENST00000481389.1_1_2:188348803-188361638:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2412109375	2	500.210043	998.405534	-0.088482	-4.426E-05	2.7365	0.0013688	2.6481	0.0013246	500.211501103906	31.578	0.21251	31.578	31.492	31.705	0					12	8	2	0	0	0	0.3576	1	4791	4791		5.2307	1.2863	1	10880	+		14974	7922	9783	9896	20499	20499					-0.09373249236443826
PDFDFPPEFY	10	Unmodified	_PDFDFPPEFY_					0	0	0		ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	ENST00000494081.5_1_20:57478601-57480533:+|nuORF	ENST00000494081.5_1_20:57478601-57480533:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.2753295898438	2	637.274229	1272.53391	0.35417	0.0002257	-0.024736	-1.5764E-05	0.32944	0.00020994	637.7757253239755	96.861	0.62413	96.861	96.552	97.176	0					70	30	3	0	0	0	0.44246	1	24566	24566		6.2058	0.47393	1	261550			14975	1000	9784	9897	20500	20500					-0.09145990721708586
PDFRESSRV	9	Unmodified	_PDFRESSRV_					0	0	0		nc|ENSG00000136854|P61764-2|STXBP1	nc|ENSG00000136854|P61764-2|STXBP1	nc|ENSG00000136854|P61764-2|STXBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7772827148438	2	546.775262	1091.53597	0.30163	0.00016492	1.9099	0.0010443	2.2116	0.0012092	546.7769901440987	37.068	0.65096	37.153	36.947	37.598	0.084476					55	23	3	0	0	0	0.30757	1	6321	6321		5.7319	1.7875	1	109890			14976	7507	9785	9898	20501	20501					-0.006135171932328376
PDFSAGYII	9	Unmodified	_PDFSAGYII_					0	0	0		ENSG00000177291|ENST00000321660|GJD4	ENSG00000177291|ENST00000321660|GJD4	ENSG00000177291|ENST00000321660|GJD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7477111816406	2	491.74765	981.480748	0.4564	0.00022443	-0.063788	-3.1368E-05	0.39261	0.00019307	491.74749842771513	78.244	0.59354	78.274	77.995	78.589	0.030159					39	20	3	0	0	0	0.25209	1	18802	18802		12.532	12.532	1	208180			14977	4697	9786	9899	20502	20502					-0.010733237137174001
PDFSAGYII	9	Unmodified	_PDFSAGYII_					0	0	0		ENSG00000177291|ENST00000321660|GJD4	ENSG00000177291|ENST00000321660|GJD4	ENSG00000177291|ENST00000321660|GJD4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	491.74765	981.480748	0.29262	0.0001439	-0.016844	-8.283E-06	0.27578	0.00013561	491.7475502754991	78.2	0.49834	78.2	78.013	78.512	0	-0.036771	2.2501E-05	NaN	12.532	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242630			14978	4697	9786	9899							-0.010733237137174001
PDGANVHLI	9	Unmodified	_PDGANVHLI_					0	0	0		nc|ENSG00000185504|Q0VG06-2|FAAP100;nc|ENSG00000185504|Q0VG06-3|FAAP100;ENSG00000185504|ENST00000327787|FAAP100	nc|ENSG00000185504|Q0VG06-2|FAAP100	nc|ENSG00000185504|Q0VG06-2|FAAP100	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.2403564453125	2	468.250892	934.48723	0.030058	1.4075E-05	0.70099	0.00032824	0.73104	0.00034231	468.25105835182785	35.542	0.71955	35.542	35.116	35.836	0					50	25	3	0	0	0	0.29105	1	5991	5991		7.9102	0	1	78829			14979	5027	9787	9900	20503	20503					0.017366142376545213
PDGETKGQTFN	11	Unmodified	_PDGETKGQTFN_					0	0	0			REV__nc|ENSG00000188611|Q9NR71-2|ASAH2	REV__nc|ENSG00000188611|Q9NR71-2|ASAH2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2599487304688	2	597.275292	1192.53603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.496	1	73.549	73.049	74.049	0.052574								0	0	0	0.32823	1	17319	17319		4.897	1.3005	1		+		14980	10774	9788	9901	20504	20504					-0.05253561983886357
PDGHGLVL	8	Unmodified	_PDGHGLVL_					0	0	0			REV__ENST00000590278.1_1_19:33695337-33695988:+|nuORF	REV__ENST00000590278.1_1_19:33695337-33695988:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2274169921875	2	404.221603	806.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.288	1	37.372	36.872	37.872	0.084476								0	0	0	0.3858	1	6351	6351		18.135	0	1		+		14981	12573	9789	9902	20505	20505					0.017695576631808763
PDIAAEAQAL	10	Unmodified	_PDIAAEAQAL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.24114990234375	2	499.761289	997.508025	-0.038094	-1.9038E-05	-0.10046	-5.0205E-05	-0.13855	-6.9243E-05	499.7612810559547	31.548	0.404	31.622	31.475	31.879	0.073782					30	19	2	0	0	0	0.31712	1	4621	4621		6.7232	0.96273	1	36294			14982	982	9790	9903	20506	20506					0.009171598266561887
PDIFAVIII	9	Unmodified	_PDIFAVIII_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.8076477050781	2	500.807511	999.600469	0.28713	0.0001438	0.16653	8.3401E-05	0.45366	0.0002272	500.8074985820484	106.92	0.84127	106.94	106.59	107.43	0.025711					268	83	4	0	0	0	0.092418	3	27375	27337;27375;27409		34.102	0	1	1726200			14983	2973	9791	9904	20507;20508;20509	20508					0.10065289630870211
PDIGVYRCI	9	Unmodified	_PDIGVYRCI_					0	0	0		ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7329711914062	2	518.268227	1034.5219	0.24304	0.00012596	-0.087674	-4.5439E-05	0.15537	8.0521E-05	518.2681819825406	53.089	0.36849	53.089	52.945	53.314	0					19	14	2	0	0	0	0.25281	1	11266	11266		6.7232	1.9672	1	80519			14984	3614	9792	9905	20510	20510					0.006021140540951819
PDITYAFVI	9	Unmodified	_PDITYAFVI_					0	0	0		nc|ENSG00000101204|P43681-2|CHRNA4;ENSG00000101204|ENST00000370263|CHRNA4	nc|ENSG00000101204|P43681-2|CHRNA4	nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.818359375	2	519.778951	1037.54335	0.33767	0.00017552	-0.3298	-0.00017142	0.0078766	4.0941E-06	519.7788383501319	88.919	0.49539	88.919	88.648	89.143	0					35	20	2	0	0	0	0.24263	1	22125	22125		12.532	1.4171	1	84424			14985	1243	9793	9906	20511	20511					0.026078223544800494
PDLDRHQL	8	Unmodified	_PDLDRHQL_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.25897216796875	2	497.259248	992.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.435	1	41.524	41.024	42.024	0.089764								0	0	0	0.38822	1	7597	7597		12.241	5.5175	1				14986	4138	9794	9907	20512	20512					0.007391151236220139
PDMCLGQPR	9	Unmodified	_PDMCLGQPR_					0	0	0			REV__DRGX|p.R214Afs*170|1|0.09|ENSG00000165606|chr10:49366268-49366268|G/-|frameshift_variant	REV__DRGX|p.R214Afs*170|1|0.09|ENSG00000165606|chr10:49366268-49366268|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2119140625	2	508.736237	1015.45792	-0.12557	-6.3883E-05	3.0465	0.0015499	2.921	0.001486	508.7376079525392	45.891	0.33926	45.891	45.729	46.069	0					13	11	2	0	0	0	0.25579	1	9109	9109		4.3292	0.73274	1	60976	+		14987	7901	9795	9908	20513	20513					-0.04918989374493776
PDMFFIFPLF	10	Unmodified	_PDMFFIFPLF_					0	0	0		tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1	tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1	tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.2144775390625	3	425.215711	1272.6253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.517	1	88.517	88.017	89.017	0								0	0	0	0.33861	1	22054	22054		0.77653	0.078866	1				14988	13687	9796	9909	20514	20514					-0.00010398558083579701
PDNAFLYIF	9	Unmodified	_PDNAFLYIF_					0	0	0			REV__tr|Q2MG95|Q2MG95_EBVB9BVLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVLF1PE=3SV=1	REV__tr|Q2MG95|Q2MG95_EBVB9BVLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVLF1PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2612915039062	2	550.276575	1098.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.44	1	95.478	94.978	95.978	0.038872								0	0	0	0.23884	1	24001	24001		11.64	2.2929	1		+		14989	13032	9797	9910	20515	20515					-0.006730617883022205
PDNSHIVSF	9	Unmodified	_PDNSHIVSF_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-3|INTS7	REV__nc|ENSG00000143493|Q9NVH2-3|INTS7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7821960449219	2	508.245806	1014.47706	0.37152	0.00018882	-0.50795	-0.00025816	-0.13644	-6.9343E-05	508.24553926050464	47.435	0.59432	47.435	47.231	47.825	0					36	19	3	0	0	0	0.23478	1	9514	9514		17.113	3.605	1	80796	+		14990	9466	9798	9911	20516	20516					-0.029599934875591316
PDPGASQPLL	10	Unmodified	_PDPGASQPLL_					0	0	0		ENSG00000132334|ENST00000254667|PTPRE	ENSG00000132334|ENST00000254667|PTPRE	ENSG00000132334|ENST00000254667|PTPRE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7633972167969	2	497.763832	993.513111	-0.33505	-0.00016678	-0.67377	-0.00033538	-1.0088	-0.00050216	497.763524836876	41.595	0.52467	41.685	41.494	42.018	0.089767					54	21	4	0	0	0	0.41617	1	7633	7633		10.151	2.8613	1	248800			14991	2566	9799	9912	20517	20517					0.01609463689283075
PDPLMGPFLF	10	Unmodified	_PDPLMGPFLF_					0	0	0			REV__ENST00000463551.1_1_X:118604271-118605018:+|nuORF	REV__ENST00000463551.1_1_X:118604271-118605018:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2798461914062	2	567.288628	1132.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.716	1	70.775	70.275	71.275	0.058578								0	0	0	0.32245	1	16471	16471		14.838	2.3067	1		+		14992	11973	9800	9913	20518	20518					0.0017245537374037667
PDPPTHPQA	9	Unmodified	_PDPPTHPQA_					0	0	0		ENST00000594019.5_1_19:47570396-47593253:-|nuORF	ENST00000594019.5_1_19:47570396-47593253:-|nuORF	ENST00000594019.5_1_19:47570396-47593253:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.74261474609375	2	480.232699	958.450845	-0.1234	-5.9261E-05	0.07262	3.4875E-05	-0.05078	-2.4386E-05	480.2325767160048	35.768	0.29362	35.768	35.675	35.969	0					15	11	2	0	0	0	0.25875	1	6064	6064		1.8442	1.0506	1	20344			14993	7280	9801	9914	20519	20519					-0.03004262659055712
PDQCNIELR	9	Unmodified	_PDQCNIELR_					0	0	0			REV__ENST00000564580.5_1_16:29124375-29127648:+|nuORF	REV__ENST00000564580.5_1_16:29124375-29127648:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7425537109375	2	544.263673	1086.51279	-0.19367	-0.00010541	-0.50083	-0.00027258	-0.6945	-0.00037799	544.263372173798	24.799	0.10305	24.799	24.712	24.815	0					10	5	2	0	0	0	0.25579	1	2790	2790		4.3292	0	1	30149	+		14994	7735	9802	9915	20520	20520					-0.027002793022575133
PDRLFSKF	8	Unmodified	_PDRLFSKF_					0	0	0			REV__ENSG00000186212|ENST00000334306|SOWAHB	REV__ENSG00000186212|ENST00000334306|SOWAHB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7704162597656	2	505.276909	1008.53927	0.13272	6.7058E-05	0.35682	0.00018029	0.48954	0.00024735	505.27688249844647	60.231	0.33665	60.304	60.125	60.462	0.073418					13	11	2	0	0	0	0.35759	1	13338	13338		10.074	1.4806	1	33591	+		14995	10699	9803	9916	20521	20521					0.03533777651421133
PDRQHENLFS	10	Unmodified	_PDRQHENLFS_					0	0	0			REV__PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	REV__PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.781494140625	2	621.796726	1241.5789	0.18221	0.0001133	0.084141	5.2319E-05	0.26635	0.00016562	621.7967544505848	69.927	0.47146	69.988	69.808	70.279	0.060562					32	20	2	0	0	0	0.37637	1	16266	16266		14.405	0.49933	1	212420	+		14996	8420	9804	9917	20522	20522					-0.032227471358282855
PDSCDSFF	8	Unmodified	_PDSCDSFF_					0	0	0			REV__ENST00000444993.6_1_9:131219684-131223448:+|nuORF	REV__ENST00000444993.6_1_9:131219684-131223448:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.17218017578125	2	459.170918	916.327284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.846	1	35.925	35.425	36.425	0.078827								0	0	0	0.38822	1	5921	5921		0.69038	0.69038	1		+		14997	11898	9805	9918	20523	20523					-0.1342268182169164
PDSDERPL	8	Unmodified	_PDSDERPL_					0	0	0			REV__ENST00000568506.1_1_16:30194950-30195564:-|nuORF	REV__ENST00000568506.1_1_16:30194950-30195564:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.7216491699219	2	464.722164	927.429775	-0.048106	-2.2356E-05	-0.28701	-0.00013338	-0.33512	-0.00015574	464.72188531502223	33.162	0.53485	33.162	32.93	33.464	0					54	20	4	0	0	0	0.50815	1	5279	5279		11.64	2.2929	1	111830	+		14998	12513	9806	9919	20524	20524					-0.0368427275857357
PDSFDPLTI	9	Unmodified	_PDSFDPLTI_					0	0	0			REV__ENSG00000165914|ENST00000328459|TTC7B	REV__ENSG00000165914|ENST00000328459|TTC7B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.75030517578125	2	502.75039	1003.48623	0.33523	0.00016854	0.12899	6.4847E-05	0.46422	0.00023338	502.7503979514579	76.333	0.34336	76.373	76.183	76.526	0.03923					18	12	2	0	0	0	0.18364	1	18200	18200		20.454	0	1	295010	+		14999	10052	9807	9920	20525	20525					-0.015376449219047572
PDSFDPLTI	9	Unmodified	_PDSFDPLTI_					0	0	0			REV__ENSG00000165914|ENST00000328459|TTC7B	REV__ENSG00000165914|ENST00000328459|TTC7B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.7685546875	2	502.75039	1003.48623	0.33523	0.00016854	0.12899	6.4847E-05	0.46422	0.00023338	502.7503979514579	76.333	0.34336	76.373	76.183	76.526	0.03923					18	12	2	0	0	0	0.23975	1	18174	18174		14.838	0	1	295010	+		15000	10052	9807	9920	20526	20526					-0.015376449219047572
PDSIGAAHLI	10	Unmodified	_PDSIGAAHLI_					0	0	0		ENSG00000126233|ENST00000246515|SLURP1	ENSG00000126233|ENST00000246515|SLURP1	ENSG00000126233|ENST00000246515|SLURP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7454528808594	2	497.271824	992.529095	-0.00816	-4.0577E-06	-0.63602	-0.00031627	-0.64418	-0.00032033	497.2714002817126	32.263	0.35326	32.263	32.133	32.487	0					22	13	2	0	0	0	0.31712	1	4986	4986		6.7232	2.7788	1	38448			15001	2333	9808	9921	20527	20527					0.032531699261767244
PDSLFFFLV	9	Unmodified	_PDSLFFFLV_					0	0	0		ENST00000589219.1_1_17:40925493-40926767:+|nuORF	ENST00000589219.1_1_17:40925493-40926767:+|nuORF	ENST00000589219.1_1_17:40925493-40926767:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7890625	2	542.789318	1083.56408	0.37089	0.00020131	0.43969	0.00023866	0.81058	0.00043997	543.2911785878429	101.44	0.56037	101.44	101.16	101.72	0					69	34	3	0	0	0	0.3182	1	26051	26051		4.3292	1.8308	1	109840			15002	7256	9809	9922	20528	20528					0.0256441273411383
PDSLKPVSL	9	Unmodified	_PDSLKPVSL_					0	0	0		nc|ENSG00000165810|Q6UXG8-2|BTNL9;nc|ENSG00000165810|Q6UXG8-3|BTNL9;ENSG00000165810|ENST00000327705|BTNL9	nc|ENSG00000165810|Q6UXG8-2|BTNL9	nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.277587890625	2	478.276575	954.538597	0.28741	0.00013746	-0.81092	-0.00038785	-0.52352	-0.00025039	478.2769381212384	81.094	0.77318	81.118	80.771	81.544	0.023613					86	27	5	0	0	0	0.27332	1	19678	19678		10.074	2.7847	1	497600			15003	4109	9810	9923	20529	20529					0.0595093821170849
PDSSWWPLL	9	Unmodified	_PDSSWWPLL_					0	0	0		ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-8|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7822875976562	2	550.7742	1099.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.121	1	41.121	40.621	41.621	0								0	0	0	0.25992	1	7630	7630		7.2892	1.0834	1				15004	1589	9811	9924	20530	20530					-0.011939459310497114
PDTFFTCLLS	10	Unmodified	_PDTFFTCLLS_					0	0	0		MYO16|p.D1054Ffs*16|1|0.18|ENSG00000041515|chr13:109055484-109055490|TTGATAA/-|frameshift_variant	MYO16|p.D1054Ffs*16|1|0.18|ENSG00000041515|chr13:109055484-109055490|TTGATAA/-|frameshift_variant	MYO16|p.D1054Ffs*16|1|0.18|ENSG00000041515|chr13:109055484-109055490|TTGATAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2708129882812	2	572.273175	1142.5318	0.79903	0.00045726	-2.9067	-0.0016634	-2.1076	-0.0012061	572.2713566955613	80.356	0.39639	80.356	80.228	80.625	0					25	13	2	0	0	0	0.38104	1	19605	19605		13.906	2.2658	1	257450			15005	7438	9812	9925	20531	20531					-0.03376742731165905
PDTQQLEQR	9	Unmodified	_PDTQQLEQR_					0	0	0			REV__ENSG00000144867|ENST00000678299|SRPRB	REV__ENSG00000144867|ENST00000678299|SRPRB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7802734375	2	557.778002	1113.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.873	1	47.953	47.453	48.453	0.080029								0	0	0	0.26267	1	9538	9538		6.7232	1.9672	1		+		15006	9508	9813	9926	20532	20532					-0.010778384014201947
PDTSRLRL	8	Unmodified	_PDTSRLRL_					0	0	0		ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2776794433594	2	479.277441	956.540328	0.44599	0.00021375	-0.29029	-0.00013913	0.15569	7.462E-05	479.277168433421	81.893	0.76266	81.893	81.601	82.364	0					54	26	3	0	0	0	0.53423	1	20136	20136		5.2307	0	1	193570			15007	3370	9814	9927	20533	20533					0.06031992020314192
PDTSRLRL	8	Unmodified	_PDTSRLRL_					0	0	0		ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	479.277441	956.540328	0.11112	5.3259E-05	0.046609	2.2339E-05	0.15773	7.5598E-05	479.277319851746	81.839	0.92114	81.861	81.503	82.424	0.021866	-0.015849	0.00013147	NaN	5.2307	72	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258740			15008	3370	9814	9927							0.06031992020314192
PDTVSVLLI	9	Unmodified	_PDTVSVLLI_					0	0	0			REV__nc|ENSG00000168078|Q96KB5-2|PBK	REV__nc|ENSG00000168078|Q96KB5-2|PBK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774353027344	2	478.786776	955.558998	0.046118	2.2081E-05	0.39931	0.00019118	0.44542	0.00021326	478.78686945753384	82.342	0.25833	82.364	82.246	82.504	0.021744					13	9	2	0	0	0	0.26684	1	20020	20020		10.824	3.5347	1	92276	+		15009	12837	9815	9928	20534	20534					0.07944108871538447
PDTVSVLLI	9	Unmodified	_PDTVSVLLI_					0	0	0			REV__nc|ENSG00000168078|Q96KB5-2|PBK	REV__nc|ENSG00000168078|Q96KB5-2|PBK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.277099609375	2	478.786776	955.558998	0.046118	2.2081E-05	0.39931	0.00019118	0.44542	0.00021326	478.78686945753384	82.342	0.25833	82.364	82.246	82.504	0.021744					13	9	2	0	0	0	0.24635	1	19989	19989		10.824	6.0679	1	92276	+		15010	12837	9815	9928	20535	20535					0.07944108871538447
PDVAVALQAQ	10	Unmodified	_PDVAVALQAQ_					0	0	0			REV__nc|ENSG00000127838|Q8N490-4|PNKD	REV__nc|ENSG00000127838|Q8N490-4|PNKD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2919616699219	2	506.277106	1010.53966	0.25019	0.00012667	-0.56265	-0.00028486	-0.31246	-0.00015819	506.2767899355574	47.866	0.33118	47.866	47.763	48.094	0					22	11	3	0	0	0	0.43972	1	9684	9684		6.7232	0.99131	1	49215	+		15011	9007	9816	9929	20536	20536					0.03481152580604885
PDVAVALQAQ	10	Unmodified	_PDVAVALQAQ_					0	0	0			REV__nc|ENSG00000127838|Q8N490-4|PNKD	REV__nc|ENSG00000127838|Q8N490-4|PNKD	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	506.277106	1010.53966	0.25019	0.00012667	-0.56265	-0.00028486	-0.31246	-0.00015819	506.2767899355574	47.866	0.33118	47.866	47.763	48.094	0	-0.00023546	-0.00022457	NaN	6.7232	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49215	+		15012	9007	9816	9929							0.03481152580604885
PDVAVALQAQ	10	Unmodified	_PDVAVALQAQ_					0	0	0			REV__nc|ENSG00000127838|Q8N490-4|PNKD	REV__nc|ENSG00000127838|Q8N490-4|PNKD	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	506.277106	1010.53966	0.5028	0.00025456	-0.020204	-1.0229E-05	0.4826	0.00024433	506.2767075191319	47.787	0.30629	47.867	47.756	48.062	0.080032	0.00023546	0.00032469	NaN	6.7232	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36418	+		15013	9007	9816	9929							0.03481152580604885
PDVIRIWDS	9	Unmodified	_PDVIRIWDS_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7899169921875	2	550.790381	1099.56621	0.25606	0.00014104	0.026418	1.4551E-05	0.28248	0.00015559	550.790381891057	51.668	0.27485	51.668	51.529	51.804	0					13	8	2	0	0	0	0.3182	1	10829	10829		4.3292	0	1	81278			15014	1541	9817	9930	20537	20537					0.02040841471944077
PDWYYTEDQ	9	Unmodified	_PDWYYTEDQ_					0	0	0		nc|ENSG00000148702|Q14520-2|HABP2;ENSG00000148702|ENST00000351270|HABP2	nc|ENSG00000148702|Q14520-2|HABP2	nc|ENSG00000148702|Q14520-2|HABP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5627136230469	3	406.164621	1215.47203	-0.29295	-0.00011898	3.749	0.0015227	3.456	0.0014037	406.1665540147641	26.774	0.11379	26.861	26.781	26.895	0.0867					12	7	2	0	0	0	0.25845	1	3235	3235		1.0715	0.3738	1	10185			15015	3374	9818	9931	20538	20538					-0.12708342140854256
PDYLGGHF	8	Unmodified	_PDYLGGHF_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.20977783203125	2	453.211235	904.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.102	1	78.102	77.602	78.602	0								0	0	0	0.38822	1	18885	18885		2.8892	0.31174	1		+		15016	7804	9819	9932	20539	20539					-0.048110327164636146
PDYLGGHF	8	Unmodified	_PDYLGGHF_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2098388671875	2	453.211235	904.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.92	1	100.97	100.47	101.47	0.042839								0	0	0	0.38822	1	25673	25673		0.79363	0.10326	1		+		15017	7804	9819	9932	20540	20540					-0.048110327164636146
PDYYNEDLN	9	Unmodified	_PDYYNEDLN_					0	0	0			REV__nc|ENSG00000130635|P20908-2|COL5A1	REV__nc|ENSG00000130635|P20908-2|COL5A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7369995117188	2	571.735468	1141.45638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.32	1	40.32	39.82	40.82	0								0	0	0	0.27782	1	7388	7388		3.5965	0.60125	1		+		15018	9061	9820	9933	20541	20541					-0.10868628657885893
PEALHCYQEL	10	Unmodified	_PEALHCYQEL_					0	0	0		ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant;nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF;ENSG00000177888|ENST00000367405|ZBTB41	ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant	ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.779296875	2	601.779156	1201.54376	0.30004	0.00018056	-0.031609	-1.9022E-05	0.26843	0.00016154	601.7791707091225	49.29	2.7303	49.367	48.353	51.083	0.076607					239	97	4	0	0	0	0.29844	2	10061	10061;10158		22.736	2.2746	1	433710			15019	4722	9821	9934	20542;20543	20542					-0.048951259879686404
PEAVVAVLIL	10	Unmodified	_PEAVVAVLIL_					0	0	0			REV__ENSG00000171561|ENST00000641541|OR2AT4	REV__ENSG00000171561|ENST00000641541|OR2AT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.3262329101562	2	512.326068	1022.63758	0.60757	0.00031127	-0.26458	-0.00013555	0.34298	0.00017572	512.3258309531603	97.896	0.63091	97.896	97.615	98.246	0					99	32	4	0	0	0	0.33099	3	24863	24863;24907;24949		19.257	0	1	1255300	+		15020	10265	9822	9935	20544;20545;20546	20544					0.12716961176613495
PEAVVAVLIL	10	Unmodified	_PEAVVAVLIL_					0	0	0			REV__ENSG00000171561|ENST00000641541|OR2AT4	REV__ENSG00000171561|ENST00000641541|OR2AT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.326171875	2	512.326068	1022.63758	0.57305	0.00029359	-0.24822	-0.00012717	0.32483	0.00016642	512.3258500616843	97.863	0.68591	97.904	97.614	98.3	0.040855					92	35	3	0	0	0	0.33099	2	24750	24750;24790		19.257	0	1	1495000	+		15021	10265	9822	9935	20547;20548	20547					0.12716961176613495
PEDAPSPEL	9	Unmodified	_PEDAPSPEL_					0	0	0		ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.72430419921875	2	477.724372	953.434192	-0.23123	-0.00011046	0.12652	6.044E-05	-0.10471	-5.0022E-05	477.72431990631037	45.216	1.0826	45.303	44.804	45.887	0.08754					76	41	2	0	0	0	0.18364	1	8705	8705		20.454	0	1	77028			15022	3086	9823	9936	20549	20549					-0.044388083356579955
PEDAPSPEL	9	Unmodified	_PEDAPSPEL_					0	0	0		ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	477.724372	953.434192	-0.46437	-0.00022184	0.12335	5.8929E-05	-0.34101	-0.00016291	477.7243672630157	45.315	1.1485	45.315	44.779	45.927	0	0.0060522	-1.1284E-06	NaN	20.454	71	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103380			15023	3086	9823	9936							-0.044388083356579955
PEDDPDHY	8	Unmodified	_PEDDPDHY_					0	0	0			REV__nc|ENSG00000112062|Q16539-2|MAPK14	REV__nc|ENSG00000112062|Q16539-2|MAPK14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7435302734375	2	494.188154	986.361755	-0.051361	-2.5382E-05	1.0085	0.00049836	0.95709	0.00047298	494.18869208949053	26.764	0.42064	26.764	26.54	26.961	0					39	27	2	0	0	0	0.3576	1	3306	3306		0.69038	0	1	28159	+		15024	8705	9824	9937	20550	20550					-0.1319714240922849
PEDDPDHY	8	Unmodified	_PEDDPDHY_					0	0	0			REV__nc|ENSG00000112062|Q16539-2|MAPK14	REV__nc|ENSG00000112062|Q16539-2|MAPK14	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	494.188154	986.361755	-0.0033139	-1.6377E-06	0.86317	0.00042657	0.85985	0.00042493	494.188511462607	26.549	0.30137	26.635	26.491	26.793	0.0867	-0.064473	-5.463E-05	NaN	0.69038	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19842	+		15025	8705	9824	9937							-0.1319714240922849
PEDLRART	8	Unmodified	_PEDLRART_					0	0	0		ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2;nc|ENSG00000203485|Q27J81-3|INF2	ENSG00000203485|ENST00000392634|INF2	ENSG00000203485|ENST00000392634|INF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.25823974609375	2	479.259248	956.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.753	1	33.753	33.253	34.253	0								0	0	0	0.38822	1	5412	5412		2.3027	1.6124	1				15026	5439	9825	9938	20551	20551					0.023951151236246915
PEDQDSEEEE	10	Unmodified	_PEDQDSEEEE_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.3211059570312	2	603.717669	1205.42079	0.65184	0.00039352	2.2158	0.0013377	2.8676	0.0017312	603.7188746278498	86.2	0.28218	86.226	86.008	86.291	0.025169					14	9	2	0	0	0	0.31643	1	21184	21184		9.3831	5.4387	1	64262			15027	5226	9826	9939	20552	20552					-0.1737075569621993
PEDSTIKAI	9	Unmodified	_PEDSTIKAI_					0	0	0			REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2641906738281	2	487.263665	972.512776	0.2917	0.00014213	0.30987	0.00015099	0.60157	0.00029312	487.2636380086292	60.484	0.52241	60.484	60.282	60.805	0					33	18	3	0	0	0	0.23216	1	13526	13526		14.838	0	1	123020	+		15028	7732	9827	9940	20553	20553					0.025420439694244124
PEDSTIKAI	9	Unmodified	_PEDSTIKAI_					0	0	0			REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	487.263665	972.512776	0.039549	1.9271E-05	0.18389	8.9603E-05	0.22344	0.00010887	487.2637710612666	60.435	0.67167	60.508	60.239	60.91	0.073421	0.012362	-7.3472E-05	NaN	14.838	28	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144760	+		15029	7732	9827	9940							0.025420439694244124
PEEEIWEELSV	11	Unmodified	_PEEEIWEELSV_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2169494628906	3	453.882002	1358.62418	0.42227	0.00019166	-3.0597	-0.0013887	-2.6374	-0.0011971	453.8800682027333	46.985	0.7396	46.985	46.728	47.467	0					33	26	2	0	0	0	0.41359	1	9472	9472		1.2148	0.35046	1	58616			15030	5388	9828	9941	20554	20554					-0.0407898618393574
PEEEIWEELSV	11	Unmodified	_PEEEIWEELSV_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.2156677246094	3	453.882002	1358.62418	0.21007	9.5347E-05	-1.6833	-0.00076404	-1.4733	-0.00066869	454.21581348587915	46.869	0.69034	46.952	46.741	47.431	0.083096					64	26	3	0	0	0	0.40824	2	9318	9270;9318		2.4348	0.52841	1	86869			15031	5388	9828	9941	20555;20556	20556					-0.0407898618393574
PEEESERHILE	11	Unmodified	_PEEESERHILE_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.5528259277344	3	456.552768	1366.63647	-0.11919	-5.4416E-05	-0.19956	-9.1112E-05	-0.31875	-0.00014553	456.55277147161206	33.026	1.33	33.1	32.862	34.192	0.074322					146	54	5	0	0	0	0.41713	1	5365	5365		0.40827	0	1	710170			15032	13348	9829	9942	20557	20557					-0.03217949720897195
PEEHPVLL	8	Unmodified	_PEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2552490234375	2	467.255643	932.496732	0.12478	5.8305E-05	-0.011285	-5.273E-06	0.1135	5.3032E-05	467.25562627347114	46.601	0.52739	46.601	46.351	46.878	0					47	31	2	0	0	0	0.023236	2	9267	9267;9330		89.427	35.851	1	519300			15033	827;5239	9830	9943	20558;20559	20558					0.027783825231949777
PEEHPVLL	8	Unmodified	_PEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2557373046875	2	467.255643	932.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.46	1	46.545	46.045	47.045	0.085617								0	0	0	0.032902	1	9117	9117		101.72	48.146	1				15034	827;5239	9830	9943	20560	20560					0.027783825231949777
PEEHPVLL	8	Unmodified	_PEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.25579833984375	2	467.255643	932.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.612	1	46.695	46.195	47.195	0.083096								0	0	0	0.12268	1	9159	9159		77.984	33.577	1				15035	827;5239	9830	9943	20561	20561					0.027783825231949777
PEEKPPRYIA	10	Unmodified	_PEEKPPRYIA_					0	0	0		ENST00000602629.1_1_2:171225816-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B	ENST00000602629.1_1_2:171225816-171400468:+|nuORF	ENST00000602629.1_1_2:171225816-171400468:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.324951171875	2	600.324588	1198.63462	0.53689	0.00032231	0.35006	0.00021015	0.88696	0.00053246	600.3250246983963	55.562	0.36915	55.562	55.38	55.749	0					16	12	2	0	0	0	0.43672	1	12025	12025		7.2892	3.3448	1	112090			15036	775	9831	9944	20562	20562					0.04325086051812832
PEEKPPRYIA	10	Unmodified	_PEEKPPRYIA_					0	0	0		ENST00000602629.1_1_2:171225816-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B	ENST00000602629.1_1_2:171225816-171400468:+|nuORF	ENST00000602629.1_1_2:171225816-171400468:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.324951171875	2	600.324588	1198.63462	0.43124	0.00025888	-0.21592	-0.00012962	0.21532	0.00012926	600.3245814512835	55.507	0.43613	55.572	55.432	55.868	0.065128					21	15	2	0	0	0	0.45443	1	11898	11898		3.9444	1.6417	1	81073			15037	775	9831	9944	20563	20563					0.04325086051812832
PEEKVTLRR	9	Unmodified	_PEEKVTLRR_					0	0	0		ENST00000532312.2_1_11:118995018-118995186:+|nuORF	ENST00000532312.2_1_11:118995018-118995186:+|nuORF	ENST00000532312.2_1_11:118995018-118995186:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3319702148438	2	564.330205	1126.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.458	1	41.547	41.047	42.047	0.089764								0	0	0	0.27427	1	7604	7604		4.3292	0.73274	1				15038	7033	9832	9945	20564	20564					0.08759908145952977
PEELASARK	9	Unmodified	_PEELASARK_					0	0	0			REV__ENST00000593991.5_3_19:16741295-16758047:-|nuORF	REV__ENST00000593991.5_3_19:16741295-16758047:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.25384521484375	2	500.774731	999.534909	0.20608	0.0001032	2.5512	0.0012776	2.7573	0.0013808	500.7762254034723	50.142	0.077175	50.142	50.077	50.154	0					4	2	2	0	0	0	0.13538	1	10350	10350		36.044	9.7029	1	23895	+		15039	12599	9833	9946	20565	20565					0.035122684378507074
PEELREII	8	Unmodified	_PEELREII_					0	0	0		nc|ENSG00000072415|Q8N3R9-2|PALS1;ENSG00000072415|ENST00000261681|PALS1	nc|ENSG00000072415|Q8N3R9-2|PALS1	nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7798767089844	2	499.779482	997.544411	0.5226	0.00026118	-0.17792	-8.8922E-05	0.34467	0.00017226	499.77934823353667	65.525	0.74641	65.592	65.365	66.112	0.066872					57	28	3	0	0	0	0.46028	1	14866	14866		18.146	7.3224	1	540540			15040	785	9834	9947	20566	20566					0.04554036723379795
PEERNYHI	8	Unmodified	_PEERNYHI_					0	0	0		nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7716064453125	2	529.256705	1056.49886	0.28687	0.00015183	-2.7384	-0.0014493	-2.4515	-0.0012975	529.2552192107595	51.533	0.50885	51.603	51.383	51.892	0.069878					35	17	3	0	0	0	0.42348	1	10628	10628		23.148	2.7339	1	171030			15041	4371	9835	9948	20567	20567					-0.027131887389941767
PEEVVAPLL	9	Unmodified	_PEEVVAPLL_					0	0	0		nc|ENSG00000141933|Q6ZTW0-2|TPGS1;ENSG00000141933|ENST00000359315|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7791748046875	2	483.778951	965.543348	0.20319	9.8301E-05	0.3154	0.00015258	0.51859	0.00025088	483.77896924136485	74.914	0.54471	74.914	74.604	75.148	0					40	19	3	0	0	0	0.26684	1	17939	17939		10.824	3.5347	1	324120			15042	3080	9836	9949	20568	20568					0.059198223544854045
PEFTDTLAI	9	Unmodified	_PEFTDTLAI_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7583312988281	2	503.758215	1005.50188	-0.23898	-0.00012039	0.86615	0.00043633	0.62718	0.00031595	503.75861725021343	44.546	0.64409	44.546	44.298	44.942	0					37	22	2	0	0	0	0.14091	2	8661	8661;8706		25.399	1.4806	1	232040			15043	620	9837	9950	20569;20570	20569					-0.0006535840486776578
PEFTDTLAI	9	Unmodified	_PEFTDTLAI_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	503.758215	1005.50188	-0.027127	-1.3666E-05	0.70514	0.00035522	0.67802	0.00034156	503.75855664860825	44.471	0.68436	44.558	44.304	44.988	0.087543	0.0062971	-7.15E-05	NaN	25.399	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163440			15044	620	9837	9950							-0.0006535840486776578
PEGDTARLL	9	Unmodified	_PEGDTARLL_					0	0	0		nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN;nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF	nc|ENSG00000100767|O95428-6|PAPLN	nc|ENSG00000100767|O95428-6|PAPLN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.26116943359375	2	486.261456	970.50836	-0.17306	-8.4153E-05	0.68892	0.000335	0.51586	0.00025084	486.26164758186366	33.93	0.35609	34.007	33.865	34.221	0.076244					29	14	3	0	0	0	0.3354	1	5356	5356		2.0598	0	1	42135			15045	1217	9838	9951	20571	20571					0.021925795465335796
PEGLDVQL	8	Unmodified	_PEGLDVQL_					0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.7315979003906	2	435.732	869.449448	0.85559	0.00037281	-0.77844	-0.00033919	0.077142	3.3613E-05	435.73158550661196	65.909	0.77587	65.909	65.498	66.274	0					40	27	2	0	0	0	0.15358	2	15139	15139;15197		46.021	0	1	139650	+		15046	8987	9839	9952	20572;20573	20572					0.00950103252205281
PEGLDVQL	8	Unmodified	_PEGLDVQL_					0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.73193359375	2	435.732	869.449448	0.39617	0.00017262	-0.59782	-0.00026049	-0.20165	-8.7865E-05	435.73170255702115	65.833	0.63192	65.9	65.597	66.229	0.066872					36	24	2	0	0	0	0.43379	1	15015	15015		21.747	0	1	237370	+		15047	8987	9839	9952	20574	20574					0.00950103252205281
PEGLDVQL	8	Unmodified	_PEGLDVQL_					0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.7319030761719	2	435.732	869.449448	0.39617	0.00017262	-0.59782	-0.00026049	-0.20165	-8.7865E-05	435.73170255702115	65.833	0.63192	65.9	65.597	66.229	0.066872					36	24	2	0	0	0	0.32091	1	14950	14950		39.957	0	1	237370	+		15048	8987	9839	9952	20575	20575					0.00950103252205281
PEGLDVQL	8	Unmodified	_PEGLDVQL_					0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	435.732	869.449448	0.85559	0.00037281	-0.77844	-0.00033919	0.077142	3.3613E-05	435.73158550661196	65.909	0.77587	65.909	65.498	66.274	0	0.0047033	-0.00011857	NaN	46.021	40	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139650	+		15049	8987	9839	9952							0.00950103252205281
PEGQFNRQ	8	Unmodified	_PEGQFNRQ_					0	0	0			REV__ENST00000593362.1_1_19:49912247-49918391:+|nuORF	REV__ENST00000593362.1_1_19:49912247-49918391:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.71978759765625	2	488.235773	974.456993	-0.34834	-0.00017007	-1.6018	-0.00078204	-1.9501	-0.00095211	488.2348383291535	24.497	0.41949	24.497	24.351	24.771	0					63	31	3	0	0	0	0.3576	1	2778	2778		8.5933	1.304	1	65840	+		15050	12595	9840	9953	20576	20576					-0.03125744427518384
PEGSEAQLR	9	Unmodified	_PEGSEAQLR_					0	0	0			REV__ENST00000512400.1_1_4:675749-678780:-|nuORF	REV__ENST00000512400.1_1_4:675749-678780:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7481994628906	2	493.748713	985.482873	0.045774	2.2601E-05	-0.089263	-4.4074E-05	-0.043489	-2.1473E-05	493.74858091496066	24.493	0.60059	24.589	24.223	24.824	0.096073					98	53	2	0	0	0	0.33704	1	2526	2526		1.8442	0	1	44755	+		15051	10160	9841	9954	20577	20577					-0.010448949759052084
PEGSPEPEL	9	Unmodified	_PEGSPEPEL_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7240905761719	2	477.724372	953.434192	-0.46437	-0.00022184	0.12335	5.8929E-05	-0.34101	-0.00016291	477.7243672630157	45.315	1.1485	45.315	44.779	45.927	0					71	40	2	0	0	0	0.22344	1	8857	8857		15.847	0	1	103380	+		15052	10118	9842	9955	20578	20578					-0.044388083356579955
PEGSPEPEL	9	Unmodified	_PEGSPEPEL_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.72406005859375	2	477.724372	953.434192	-0.23123	-0.00011046	0.12652	6.044E-05	-0.10471	-5.0022E-05	477.72431990631037	45.216	1.0826	45.303	44.804	45.887	0.08754					76	41	2	0	0	0	0.22344	1	8761	8761		15.847	0	1	77028	+		15053	10118	9842	9955	20579	20579					-0.044388083356579955
PEGVEIISI	9	Unmodified	_PEGVEIISI_					0	0	0		ENST00000512281.1_1_5:118470015-118483170:+|nuORF;nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	ENST00000512281.1_1_5:118470015-118483170:+|nuORF	ENST00000512281.1_1_5:118470015-118483170:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.76861572265625	2	478.768583	955.522613	-0.11405	-5.4601E-05	0.27737	0.0001328	0.16333	7.8197E-05	478.76866621137583	89.615	0.46738	89.615	89.367	89.834	0					35	17	3	0	0	0	0.15282	1	22416	22416		24.021	0	1	285990			15054	4515	9843	9956	20580	20580					0.04307231974826209
PEICLAEFTD	10	Unmodified	_PEICLAEFTD_					0	0	0			REV__ENSG00000103363|ENST00000409906|ELOB	REV__ENSG00000103363|ENST00000409906|ELOB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2733764648438	2	569.260265	1136.50598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.547	1	44.547	44.047	45.047	0								0	0	0	0.28665	1	8667	8667		19.257	2.3147	1		+		15055	8474	9844	9957	20581	20581					-0.056816369734633554
PEIEVQLSA	9	Unmodified	_PEIEVQLSA_					0	0	0			REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2	REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2499694824219	2	493.263665	984.512776	0.41704	0.00020571	-0.40086	-0.00019773	0.016183	7.9823E-06	493.2634116919863	38.18	0.46623	38.18	37.96	38.426	0					33	15	3	0	0	0	0.30005	1	6734	6734		6.7232	0	1	104370	+		15056	8877	9845	9958	20582	20582					0.019900439694424676
PEIEVQLSA	9	Unmodified	_PEIEVQLSA_					0	0	0			REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2	REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.263665	984.512776	0.39411	0.0001944	-0.064363	-3.1748E-05	0.32975	0.00016265	493.2635008234802	38.127	0.39811	38.214	37.987	38.385	0.08688	0.017238	0.0002034	NaN	6.7232	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85026	+		15057	8877	9845	9958							0.019900439694424676
PEIFQTNQLL	10	Unmodified	_PEIFQTNQLL_					0	0	0		ENST00000566016.5_1_16:46637844-46655271:-|nuORF;ENSG00000171241|ENST00000303383|SHCBP1	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7957763671875	2	601.824421	1201.63429	0.64904	0.00039061	2.7148	0.0016338	3.3638	0.0020244	601.8257355103599	92.285	0.3735	92.285	92.114	92.487	0					21	13	2	0	0	0	0.31731	1	23162	23162		6.2058	0	1	79997			15058	4431	9846	9959	20583	20583					0.041536663319675426
PEIRTSKL	8	Unmodified	_PEIRTSKL_					0	0	0		nc|ENSG00000078487|Q9H0M4-3|ZCWPW1;ENST00000490089.1_1_7:99998800-100014813:-|nuORF;nc|ENSG00000078487|Q9H0M4-5|ZCWPW1;nc|ENSG00000078487|Q9H0M4-2|ZCWPW1;nc|ENSG00000078487|Q9H0M4-4|ZCWPW1;nc|ENSG00000078487|Q9H0M4|ZCWPW1;ENSG00000078487|ENST00000684423|ZCWPW1	nc|ENSG00000078487|Q9H0M4-3|ZCWPW1	nc|ENSG00000078487|Q9H0M4-3|ZCWPW1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2831726074219	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.893	1	95.893	95.393	96.393	0								0	0	0	0.38822	1	24296	24296		5.2307	0	1				15059	6802	9847	9960	20584	20584					0.0762576030585933
PEKFQHIL	8	Unmodified	_PEKFQHIL_					0	0	0		ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.284423828125	2	506.284734	1010.55492	0.23208	0.0001175	-1.0809	-0.00054722	-0.84879	-0.00042973	506.28397802371524	46.972	0.67852	46.972	46.789	47.467	0					32	23	2	0	0	0	0.25437	2	9382	9382;9445		38.176	20.029	1	136050			15060	6701	9848	9961	20585;20586	20585					0.050060641684808616
PEKFQHIL	8	Unmodified	_PEKFQHIL_					0	0	0		ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000474626.5_1_6:33239896-33243984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2845764160156	2	506.284734	1010.55492	0.22428	0.00011355	-0.44283	-0.0002242	-0.21855	-0.00011065	506.28432374900365	46.859	0.38719	46.942	46.79	47.178	0.083096					24	14	2	0	0	0	0.15771	2	9226	9226;9269		45.7	21.026	1	156680			15061	6701	9848	9961	20587;20588	20587					0.050060641684808616
PEKMKKDF	8	Unmodified	_PEKMKKDF_					0	0	0		PPP3CC-PIWIL2|1|fusion;PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant;nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2	PPP3CC-PIWIL2|1|fusion	PPP3CC-PIWIL2|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2720336914062	2	511.770603	1021.52665	0.55258	0.0002828	0.19153	9.8018E-05	0.74411	0.00038081	511.77067862387776	93.346	0.47138	93.346	93.157	93.628	0					29	18	2	0	0	0	0.53118	1	23560	23560		7.2892	2.0586	1	61337			15062	7675	9849	9962	20589	20589					0.01674998196881461
PEKPRPALL	9	Unmodified	_PEKPRPALL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8130798339844	2	510.813659	1019.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.721	1	95.76	95.26	96.26	0.038872								0	0	0	0.27427	1	24088	24088		4.3292	0.73274	1				15063	2075	9850	9963	20590	20590					0.10374326093892705
PEKQDQCCTT	10	Unmodified	_PEKQDQCCTT_					0	0	0		ENSG00000123728|ENST00000370874|RAP2C	ENSG00000123728|ENST00000370874|RAP2C	ENSG00000123728|ENST00000370874|RAP2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.3427734375	2	576.736631	1151.45871	0.20696	0.00011936	-2.6893	-0.001551	-2.4824	-0.0014317	576.7351051802557	56.23	0.19917	56.297	56.234	56.434	0.066452					14	7	2	0	0	0	0.31667	1	12090	12090		8.7454	1.4562	1	148320			15064	2231	9851	9964	20591	20591					-0.11096239516109563
PEKRAHVRRHR	11	Unmodified	_PEKRAHVRRHR_					0	0	0			REV__ENST00000574735.1_1_17:5009121-5012368:-|nuORF	REV__ENST00000574735.1_1_17:5009121-5012368:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2837829589844	3	481.283503	1440.82868	0.14161	6.8152E-05	0.25122	0.00012091	0.39282	0.00018906	481.2836271951267	94.334	0.52757	94.334	94.084	94.612	0					66	24	3	0	0	0	0.41713	1	23786	23786		0.40827	0.24894	1	188290	+		15065	10133	9852	9965	20592	20592					0.12589900051102632
PEKYTRIYF	9	Unmodified	_PEKYTRIYF_					0	0	0			REV__ENSG00000118402|ENST00000369816|ELOVL4	REV__ENSG00000118402|ENST00000369816|ELOVL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.2169494628906	3	406.21688	1215.62881	0.25089	0.00010191	-0.21973	-8.9258E-05	0.031158	1.2657E-05	406.2167307952057	64.779	1.0536	64.848	64.587	65.64	0.068916					108	40	4	0	0	0	0.14539	2	14684	14637;14684		24.882	0	1	1896900	+		15066	8841	9853	9966	20593;20594	20594					0.02961987540129485
PELEVQVALL	10	Unmodified	_PELEVQVALL_					0	0	0			REV__nc|ENSG00000258992|Q01534-2|TSPY1	REV__nc|ENSG00000258992|Q01534-2|TSPY1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8243408203125	2	555.823889	1109.63323	0.5363	0.00029809	0.25163	0.00013986	0.78792	0.00043795	555.823910576837	87.84	0.48759	87.87	87.653	88.141	0.030045					26	16	2	0	0	0	0.36006	1	21691	21691		16.149	0	1	217000	+		15067	10156	9854	9967	20595	20595					0.08279451963062456
PELSQVHR	8	Unmodified	_PELSQVHR_					0	0	0			REV__ENSG00000116863|ENST00000373178|ADPRS	REV__ENSG00000116863|ENST00000373178|ADPRS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2616271972656	2	483.261791	964.509028	-0.47258	-0.00022838	0.19376	9.3638E-05	-0.27882	-0.00013474	483.2618838332606	24.979	1.9818	24.979	24.712	26.694	0					333	152	4	0	0	0	0.53494	4	3115	3035;3115;3157;3284		4.756	0	1	1090700	+		15068	8819	9855	9968	20596;20597;20598;20599	20597					0.025354189862468957
PELSQVHR	8	Unmodified	_PELSQVHR_					0	0	0			REV__ENSG00000116863|ENST00000373178|ADPRS	REV__ENSG00000116863|ENST00000373178|ADPRS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.26153564453125	2	483.261791	964.509028	-0.30069	-0.00014531	0.15648	7.5622E-05	-0.14421	-6.9689E-05	483.26187415574174	24.843	1.7161	24.939	24.637	26.353	0.096075					322	147	4	0	0	0	0.53494	5	2847	2847;2886;2972;3013;3035		4.756	0	1	1168800	+		15069	8819	9855	9968	20600;20601;20602;20603;20604	20600					0.025354189862468957
PELWHRQK	8	Unmodified	_PELWHRQK_					0	0	0			REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7283935546875	2	547.298707	1092.58286	0.099861	5.4654E-05	-1.6145	-0.00088362	-1.5146	-0.00082896	547.297726244361	39.763	0.45639	39.852	39.608	40.064	0.088566					21	16	2	0	0	0	0.3576	1	7023	7023		2.5775	0.27475	1	28836	+		15070	10280	9856	9969	20605	20605					0.04027387148562411
PELWLNLNT	9	Unmodified	_PELWLNLNT_					0	0	0			REV__ENST00000434063.3_1_7:27139588-27139714:+|nuORF	REV__ENST00000434063.3_1_7:27139588-27139714:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2985229492188	2	550.292756	1098.57096	0.16525	9.0935E-05	1.3887	0.00076422	1.554	0.00085515	550.292790438817	35.03	0.71432	35.03	34.796	35.51	0					90	24	5	0	0	0	0.27332	1	5855	5855		10.074	0	1	323820	+		15071	11858	9857	9970	20606	20606					0.025617256147143053
PENEQVEFLNR	11	Unmodified	_PENEQVEFLNR_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.53997802734375	3	458.893124	1373.65754	0.25535	0.00011718	2.3873	0.0010955	2.6427	0.0012127	458.8942769212408	55.659	0.45568	55.724	55.491	55.946	0.065128					28	16	3	0	0	0	0.31094	1	11964	11964		2.084	0.62885	1	51930	+		15072	7956	9858	9971	20607	20607					-0.014339396213927103
PEPSPHDLPM	10	Unmodified	_PEPSPHDLPM_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1;ENST00000529408.1_1_12:85431954-85441296:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2884521484375	2	560.260599	1118.50665	0.24996	0.00014004	3.1687	0.0017753	3.4186	0.0019153	560.7636379905813	50.471	0.19093	50.471	50.348	50.539	0					10	6	3	0	0	0	0.31691	1	10469	10469		7.2892	2.5332	1	52932			15073	2631	9859	9972	20608	20608					-0.04786797533756726
PEPVGINSSI	10	Unmodified	_PEPVGINSSI_					0	0	0		ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-3|USP6	ENSG00000129204|ENST00000574788|USP6	ENSG00000129204|ENST00000574788|USP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.771728515625	2	506.769114	1011.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.134	1	79.16	78.66	79.66	0.026436								0	0	0	0.30135	1	19039	19039		17.443	2.6044	1				15074	2423	9860	9973	20609	20609					0.01837446343722604
PEPVVEPGKRR	11	Unmodified	_PEPVVEPGKRR_					0	0	0			REV__ENST00000590288.1_3_17:74483988-74497434:-|nuORF	REV__ENST00000590288.1_3_17:74483988-74497434:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.3619384765625	2	632.362036	1262.70952	-0.012464	-7.8818E-06	-0.49142	-0.00031076	-0.50389	-0.00031864	632.3618514418391	104.59	0.38622	104.59	104.39	104.78	0					77	35	4	0	0	0	0.40796	1	26915	26915		2.4985	0.84587	1	248030	+		15075	12574	9861	9974	20610	20610					0.08867268583026089
PEQSSTAHGA	10	Unmodified	_PEQSSTAHGA_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7225646972656	2	492.722695	983.430838	-0.21535	-0.00010611	0.061826	3.0463E-05	-0.15352	-7.5643E-05	492.72269620008325	22.041	0.32654	22.041	21.9	22.227	0					49	30	2	0	0	0	0.46746	1	2019	2019		1.4819	0.68827	1	24394	+		15076	9492	9862	9975	20611	20611					-0.06154058389665806
PEQSSTAHGA	10	Unmodified	_PEQSSTAHGA_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	492.722695	983.430838	-0.21535	-0.00010611	0.061826	3.0463E-05	-0.15352	-7.5643E-05	492.72269620008325	22.041	0.32654	22.041	21.9	22.227	0	0.044039	0.00018872	NaN	1.4819	49	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24394	+		15077	9492	9862	9975							-0.06154058389665806
PEQSSTAHGA	10	Unmodified	_PEQSSTAHGA_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.722695	983.430838	0.087899	4.331E-05	-0.31808	-0.00015672	-0.23018	-0.00011341	492.72250571285866	21.851	0.28248	21.953	21.819	22.101	0.10178	-0.044039	-0.00018566	NaN	1.4819	59	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24548	+		15078	9492	9862	9975							-0.06154058389665806
PESADLRAL	9	Unmodified	_PESADLRAL_					0	0	0		ENST00000477039.5_1_3:12393091-12447643:+|nuORF;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	ENST00000477039.5_1_3:12393091-12447643:+|nuORF	ENST00000477039.5_1_3:12393091-12447643:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2431335449219	2	486.261456	970.50836	-0.32963	-0.00016029	0.20987	0.00010205	-0.11977	-5.8238E-05	486.2617603640405	31.542	0.22916	31.542	31.447	31.676	0					11	9	2	0	0	0	0.25579	1	4758	4758		4.3292	1.7518	1	10320			15079	2557	9863	9976	20612	20612					0.021925795465108422
PESTPELPV	9	Unmodified	_PESTPELPV_					0	0	0		nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C	nc|ENSG00000143434|Q9H3T2-2|SEMA6C	nc|ENSG00000143434|Q9H3T2-2|SEMA6C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.73974609375	2	484.75039	967.486227	0.022084	1.0705E-05	-0.65053	-0.00031534	-0.62844	-0.00030464	484.75009404908883	50.615	0.30762	50.688	50.579	50.886	0.07312					14	10	2	0	0	0	0.25174	1	10346	10346		7.2892	0	1	37169			15080	3158	9864	9977	20613	20613					0.0011835507808655166
PESWGFLC	8	Unmodified	_PESWGFLC_					0	0	0		POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.7073669433594	2	469.707471	937.400389	-0.53357	-0.00025062	0.51807	0.00024334	-0.015502	-7.2816E-06	469.70778025983384	41.153	0.35925	41.243	41.039	41.398	0.089645					18	12	2	0	0	0	0.53345	1	7514	7514		5.7604	0	1	36525			15081	2299	9865	9978	20614	20614					-0.07081508308397133
PETRTDPEL	9	Unmodified	_PETRTDPEL_					0	0	0		ENST00000460627.5_1_3:184104458-184107207:+|nuORF;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD	ENST00000460627.5_1_3:184104458-184107207:+|nuORF	ENST00000460627.5_1_3:184104458-184107207:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7671508789062	2	529.261653	1056.50875	0.174	9.2089E-05	0.487	0.00025775	0.661	0.00034984	529.766722397566	51.601	0.86655	51.601	51.295	52.162	0					79	29	4	0	0	0	0.16392	2	10851	10813;10851		22.736	3.1066	1	356340			15082	1043	9866	9979	20615;20616	20616					-0.017240455242927055
PEVLTTPF	8	Unmodified	_PEVLTTPF_					0	0	0			REV__ENSG00000132874|ENST00000255226|SLC14A2	REV__ENSG00000132874|ENST00000255226|SLC14A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2449951171875	2	452.244744	902.474934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.241	1	76.241	75.741	76.741	0								0	0	0	0.34957	1	18316	18316		36.044	5.8194	1		+		15083	9132	9867	9980	20617	20617					0.019795777746253407
PEVLTTPF	8	Unmodified	_PEVLTTPF_					0	0	0			REV__ENSG00000132874|ENST00000255226|SLC14A2	REV__ENSG00000132874|ENST00000255226|SLC14A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.2448425292969	2	452.244744	902.474934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.174	1	76.213	75.713	76.713	0.03923								0	0	0	0.33166	1	18137	18137		38.151	6.0342	1		+		15084	9132	9867	9980	20618	20618					0.019795777746253407
PEVRRSVA	8	Unmodified	_PEVRRSVA_					0	0	0			REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF	REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.26483154296875	2	457.264333	912.514114	0.42513	0.0001944	-0.23383	-0.00010692	0.1913	8.7474E-05	457.26416748656123	79.052	0.69304	79.052	78.705	79.398	0					36	23	2	0	0	0	0.53423	1	19147	19147		5.2307	0	1	103140	+		15085	12613	9868	9981	20619	20619					0.05435722848858404
PEVRRSVA	8	Unmodified	_PEVRRSVA_					0	0	0			REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF	REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	457.264333	912.514114	0.42513	0.0001944	-0.23383	-0.00010692	0.1913	8.7474E-05	457.26416748656123	79.052	0.69304	79.052	78.705	79.398	0	0.073764	-0.00017465	NaN	5.2307	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103140	+		15086	12613	9868	9981							0.05435722848858404
PEVRSLRG	8	Unmodified	_PEVRSLRG_					0	0	0			REV__ENST00000480291.1_7:100609366-100609411:+|nuORF	REV__ENST00000480291.1_7:100609366-100609411:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2643127441406	2	457.264333	912.514114	0.18316	8.3751E-05	0.12009	5.4913E-05	0.30325	0.00013866	457.26431643892676	78.874	0.6541	78.904	78.738	79.392	0.030159					36	22	2	0	0	0	0.53423	1	19028	19028		5.2307	0	1	109110	+		15087	12082	9869	9982	20620	20620					0.05435722848869773
PEVYFACIF	9	Unmodified	_PEVYFACIF_					0	0	0			REV__ENST00000220592.9_2_8:141532139-141532301:-|nuORF	REV__ENST00000220592.9_2_8:141532139-141532301:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7610473632812	2	544.759704	1087.50485	0.36739	0.00020014	2.0789	0.0011325	2.4463	0.0013326	544.7609532404718	90.983	1.1059	90.983	90.602	91.707	0					58	40	3	0	0	0	0.25209	1	22959	22959		12.532	3.1841	1	100440	+		15088	11179	9870	9983	20621	20621					-0.03539806551725633
PFAIDIFPV	9	Unmodified	_PFAIDIFPV_					0	0	0		ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2;ENST00000498777.5_1_7:56132001-56141950:+|nuORF;ENST00000483327.5_1_7:56132001-56140978:+|nuORF;nc|ENSG00000129103|Q8NBJ7-5|SUMF2;nc|ENSG00000129103|Q8NBJ7-4|SUMF2	ENSG00000129103|ENST00000434526|SUMF2	ENSG00000129103|ENST00000434526|SUMF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7358703613281	2	509.784036	1017.55352	0.2931	0.00014942	-0.5019	-0.00025586	-0.2088	-0.00010644	509.78398464687444	94.885	0.40271	94.885	94.715	95.118	0					23	15	2	0	0	0	0.164	1	23972	23972		30.225	7.0764	1	75866			15089	2419	9871	9984	20622	20622					0.04544430079704398
PFAKPLPTF	9	Unmodified	_PFAKPLPTF_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2912902832031	2	509.292028	1016.5695	-0.017756	-9.0428E-06	-0.10886	-5.5439E-05	-0.12661	-6.4482E-05	509.29183813865956	58.432	0.21524	58.432	58.327	58.542	0					9	6	2	0	0	0	0.18364	1	12895	12895		20.454	4.6064	1	61508			15090	4924	9872	9985	20623	20623					0.06188136316609416
PFALLMALV	9	Unmodified	_PFALLMALV_					0	0	0		ENSG00000120235|ENST00000380210|IFNA6;ENSG00000233816|ENST00000610660|IFNA13	ENSG00000120235|ENST00000380210|IFNA6	ENSG00000120235|ENST00000380210|IFNA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.790771484375	2	487.790807	973.56706	0.2262	0.00011034	-0.093256	-4.5489E-05	0.13295	6.4851E-05	487.7907044487439	78.774	2.9857	78.804	78.021	81.007	0.030159					180	105	4	0	0	0	0.2796	1	19129	19129		9.3474	4.1168	1	1403600			15091	2112	9873	9986	20624	20624					0.0792196458729677
PFAPAIQTF	9	Unmodified	_PFAPAIQTF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2659606933594	2	496.26601	990.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.359	1	72.359	71.859	72.859	0								0	0	0	0.22204	1	17125	17125		14.838	4.7643	1				15092	4862	9874	9987	20625	20625					0.021829729028468137
PFCALSGF	8	Unmodified	_PFCALSGF_					0	0	0			REV__ENST00000481918.1_1_1:213186664-213188729:-|nuORF	REV__ENST00000481918.1_1_1:213186664-213188729:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.8585510253906	2	421.199282	840.384011	0.43634	0.00018379	0.09156	3.8565E-05	0.5279	0.00022235	421.19930452817607	95.405	0.24492	95.405	95.194	95.439	0					15	9	2	0	0	0	0.3576	1	24137	24137		6.3541	0	1	101710	+		15093	12095	9875	9988	20626	20626					-0.042565894744939214
PFCALSGF	8	Unmodified	_PFCALSGF_					0	0	0			REV__ENST00000481918.1_1_1:213186664-213188729:-|nuORF	REV__ENST00000481918.1_1_1:213186664-213188729:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.8583984375	2	421.199282	840.384011	0.035584	1.4988E-05	0.75058	0.00031615	0.78617	0.00033113	421.199777938777	95.347	0.33463	95.386	95.115	95.45	0.038872					24	13	3	0	0	0	0.3576	1	23964	23964		6.3541	0.59368	1	164080	+		15094	12095	9875	9988	20627	20627					-0.042565894744939214
PFCCLLLVL	9	Unmodified	_PFCCLLLVL_					0	0	0			REV__ENST00000571335.5_1_17:19445708-19459199:+|nuORF	REV__ENST00000571335.5_1_17:19445708-19459199:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7842712402344	2	510.784667	1019.55478	0.59391	0.00030336	-1.1499	-0.00058736	-0.55601	-0.000284	510.7839990341667	84.893	0.46877	84.916	84.77	85.239	0.023132					24	18	2	0	0	0	0.20644	1	20786	20786		20.871	3.9289	1	127730	+		15095	9433	9876	9989	20628	20628					0.04578604852611079
PFCDSRREMD	10	Unmodified	_PFCDSRREMD_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000102595|ENST00000376747|UGGT2	ENSG00000136731|ENST00000259253|UGGT1;ENSG00000102595|ENST00000376747|UGGT2	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.263916015625	2	628.263347	1254.51214	0.59078	0.00037116	-0.71228	-0.0004475	-0.12151	-7.6338E-05	628.2631387662451	66.343	1.0502	66.343	65.879	66.929	0					79	39	3	0	0	0	0.44727	1	15284	15284		5.2969	1.7004	1	297390			15096	2804;1320	9877	9990	20629	20629					-0.10493442013580534
PFCDSRREMD	10	Unmodified	_PFCDSRREMD_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000102595|ENST00000376747|UGGT2	ENSG00000136731|ENST00000259253|UGGT1;ENSG00000102595|ENST00000376747|UGGT2	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	628.263347	1254.51214	0.59696	0.00037505	-0.37763	-0.00023725	0.21934	0.0001378	628.2631205505219	66.075	1.1868	66.141	65.501	66.688	0.066872	-0.10076	0.0002415	NaN	5.2969	80	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223980			15097	2804;1320	9877	9990							-0.10493442013580534
PFDLRIPFAR	10	Unmodified	_PFDLRIPFAR_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.55364990234375	3	411.236385	1230.68733	0.15895	6.5367E-05	-3.8179	-0.0015701	-3.659	-0.0015047	411.23538905742885	69.838	0.27295	69.899	69.667	69.94	0.060562					10	9	2	0	0	0	0.31837	1	16213	16213		1.9064	0.1641	1	38697			15098	2410	9878	9991	20630	20630					0.08121088905249962
PFDPLDRAFSE	11	Unmodified	_PFDPLDRAFSE_					0	0	0			REV__nc|ENSG00000141699|Q86VR2-2|RETREG3	REV__nc|ENSG00000141699|Q86VR2-2|RETREG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.3101196289062	2	647.309135	1292.60372	0.47995	0.00031067	0.68241	0.00044173	1.1624	0.00075241	647.309519866303	99.286	0.69663	99.286	98.736	99.433	0					78	46	2	0	0	0	0.40055	1	25334	25334		4.1895	0.60244	1	154840	+		15099	9413	9879	9992	20631	20631					-0.030881120531148554
PFDTVFIF	8	Unmodified	_PFDTVFIF_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.251953125	2	493.255111	984.49567	-0.1609	-7.9363E-05	-3.1711	-0.0015642	-3.332	-0.0016435	493.25339906750855	40.801	0.40943	40.89	40.743	41.153	0.089645					38	16	3	0	0	0	0.53858	1	7467	7467		2.3027	0	1	69040			15100	4396	9880	9993	20632	20632					0.0028016815429054986
PFESCPIPTF	10	Unmodified	_PFESCPIPTF_					0	0	0			REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.283203125	2	569.267893	1136.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.765	1	82.765	82.265	83.265	0								0	0	0	0.33215	1	20305	20305		9.3831	3.1773	1		+		15101	9059	9881	9994	20633	20633					-0.04156725385610116
PFESSVIFS	9	Unmodified	_PFESSVIFS_					0	0	0			REV__ENSG00000166012|ENST00000448108|TAF1D	REV__ENSG00000166012|ENST00000448108|TAF1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.75250244140625	2	506.752933	1011.49131	0.37968	0.0001924	0.0021338	1.0813E-06	0.38181	0.00019348	506.75282622616294	91.695	1.3852	91.695	91.269	92.654	0					114	52	4	0	0	0	0.22344	1	23167	23167		15.847	0	1	2472700	+		15102	10058	9882	9995	20634	20634					-0.013973410592711843
PFEVNNEPF	9	Unmodified	_PFEVNNEPF_					0	0	0			REV__ENST00000462994.1_1_10:103547260-103547323:-|nuORF	REV__ENST00000462994.1_1_10:103547260-103547323:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.75341796875	2	546.753464	1091.49238	-0.49177	-0.00026888	0.49313	0.00026962	0.001367	7.4739E-07	546.7537276320508	41.43	0.64732	41.43	41.126	41.773	0					37	23	2	0	0	0	0.31496	1	7768	7768		4.756	0.42677	1	85098	+		15103	11970	9883	9996	20635	20635					-0.04971126690384153
PFEYFIMAM	9	Unmodified	_PFEYFIMAM_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.761474609375	2	574.761389	1147.50822	-0.2529	-0.00014536	-0.065056	-3.7392E-05	-0.31795	-0.00018275	574.7613273643636	23.368	1.0929	23.368	23.15	24.243	0					197	102	4	0	0	0	0.35102	1	2565	2565		0	0	1	121550			15104	3364	9884	9997	20636	20636					-0.05962879769367646
PFEYFIMAM	9	Unmodified	_PFEYFIMAM_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7605590820312	2	574.761389	1147.50822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.836	1	25.836	25.336	26.336	0								0	0	0	0.29525	1	3088	3088		0	0	1				15105	3364	9884	9997	20637	20637					-0.05962879769367646
PFFEEVWQ	8	Unmodified	_PFFEEVWQ_					0	0	0			REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2855834960938	2	541.2531	1080.49165	0.36021	0.00019496	-0.45683	-0.00024726	-0.096619	-5.2295E-05	541.2529953314162	36.826	0.20197	36.907	36.765	36.967	0.081711					12	8	2	0	0	0	0.3576	1	6215	6215		4.3292	1.0479	1	24247	+		15106	8376	9885	9998	20638	20638					-0.045379213394198814
PFFGQTWY	8	Unmodified	_PFFGQTWY_					0	0	0			REV__ENST00000467098.1_1_6:31647044-31651801:-|nuORF	REV__ENST00000467098.1_1_6:31647044-31651801:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3038330078125	2	523.242535	1044.47052	0.58361	0.00030537	-1.7408	-0.00091088	-1.1572	-0.00060551	523.2417371181803	83.782	0.15099	83.782	83.658	83.809	0					6	4	2	0	0	0	0.3576	1	20610	20610		6.3541	0.59368	1	24810	+		15107	12004	9886	9999	20639	20639					-0.04993886648276202
PFFKQLIV	8	Unmodified	_PFFKQLIV_					0	0	0		ENSG00000204147|ENST00000647317|ASAH2B;nc|ENSG00000188611|Q9NR71-2|ASAH2;ENSG00000188611|ENST00000682911|ASAH2	ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.30450439453125	2	496.302396	990.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.346	1	80.346	79.846	80.846	0								0	0	0	0.38822	1	19569	19569		2.5775	1.7838	1				15108	5165	9887	10000	20640	20640					0.09456726696294027
PFFQSYIE	8	Unmodified	_PFFQSYIE_					0	0	0			REV__nc|ENSG00000185774|Q6PIL6-3|KCNIP4	REV__nc|ENSG00000185774|Q6PIL6-3|KCNIP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7466430664062	2	515.74765	1029.48075	0.20257	0.00010447	-1.9113	-0.00098576	-1.7087	-0.00088128	515.7469126957916	86.98	0.66549	86.98	86.683	87.348	0					55	28	3	0	0	0	0.4433	1	21558	21558		20.454	3.5113	1	445920	+		15109	10681	9888	10001	20641	20641					-0.03281323713713391
PFFSPIRM	8	Unmodified	_PFFSPIRM_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7491760253906	2	497.762581	993.510608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.343	1	49.343	48.843	49.843	0								0	0	0	0.38822	1	10113	10113		5.7604	0.52976	1		+		15110	10223	9889	10002	20642	20642					0.013593367506359755
PFGQSKRE	8	Unmodified	_PFGQSKRE_					0	0	0			REV__ENSG00000151773|ENST00000444614|CCDC122	REV__ENSG00000151773|ENST00000444614|CCDC122	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.70263671875	2	474.748516	947.482479	-0.14256	-6.7679E-05	0.84833	0.00040274	0.70577	0.00033506	474.7485435400939	35.386	0.13105	35.465	35.382	35.513	0.078827					6	4	2	0	0	0	0.3576	1	5788	5788		0.79363	0	1	6643.6	+		15111	9655	9890	10003	20643	20643					0.0066373009490234836
PFHNRVPL	8	Unmodified	_PFHNRVPL_					0	0	0			REV__ENST00000547063.5_1_12:112568363-112572820:+|nuORF	REV__ENST00000547063.5_1_12:112568363-112572820:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2764892578125	2	490.277244	978.539935	0.6114	0.00029976	-1.9739	-0.00096774	-1.3625	-0.00066798	490.27621127912306	66.668	0.58145	66.734	66.602	67.184	0.065063					27	21	2	0	0	0	0.53423	1	15340	15340		5.2307	0.90143	1	151230	+		15112	12420	9891	10004	20644	20644					0.049806170911210756
PFHPPLQLFF	10	Unmodified	_PFHPPLQLFF_					0	0	0		ENST00000573850.1_1_16:27709674-27761267:+|nuORF;ENSG00000047578|ENST00000261588|KATNIP	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8378295898438	2	621.837134	1241.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.084	1	84.084	83.584	84.584	0								0	0	0	0.14775	1	20706	20706		37.974	11.09	1				15113	560	9892	10005	20645	20645					0.04855185645033089
PFHPPLQLFF	10	Unmodified	_PFHPPLQLFF_					0	0	0		ENST00000573850.1_1_16:27709674-27761267:+|nuORF;ENSG00000047578|ENST00000261588|KATNIP	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8370361328125	2	621.837134	1241.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.24	1	84.24	83.74	84.74	0								0	0	0	0.080462	1	20754	20754		49.933	21.446	1				15114	560	9892	10005	20646	20646					0.04855185645033089
PFHPPLQLFF	10	Unmodified	_PFHPPLQLFF_					0	0	0		ENST00000573850.1_1_16:27709674-27761267:+|nuORF;ENSG00000047578|ENST00000261588|KATNIP	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.837158203125	2	621.837134	1241.65972	0.1863	0.00011585	-0.1552	-9.6508E-05	0.031103	1.9341E-05	621.8372527597724	84.245	0.55415	84.267	83.889	84.443	0.021744					56	27	3	0	0	0	0.016242	3	20584	20540;20584;20625		71.134	37.031	1	1084400			15115	560	9892	10005	20647;20648;20649	20648					0.04855185645033089
PFHPPLQLFF	10	Unmodified	_PFHPPLQLFF_					0	0	0		ENST00000573850.1_1_16:27709674-27761267:+|nuORF;ENSG00000047578|ENST00000261588|KATNIP	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENST00000573850.1_1_16:27709674-27761267:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8375854492188	2	621.837134	1241.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.521	1	84.544	84.044	85.044	0.023125								0	0	0	0.28665	1	20678	20678		19.257	8.4331	1				15116	560	9892	10005	20650	20650					0.04855185645033089
PFHSFTFLF	9	Unmodified	_PFHSFTFLF_					0	0	0			REV__ENST00000530561.5_1_11:58294471-58294537:-|nuORF	REV__ENST00000530561.5_1_11:58294471-58294537:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7706298828125	2	571.78711	1141.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.894	1	63.894	63.394	64.394	0								0	0	0	0.22979	1	14547	14547		13.508	0.97634	1		+		15117	12353	9893	10006	20651	20651					-0.005450516887776757
PFIKQRHV	8	Unmodified	_PFIKQRHV_					0	0	0		ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.806396484375	2	512.806168	1023.59778	0.3683	0.00018887	0.45093	0.00023124	0.81923	0.00042011	512.806327177048	101.48	0.63203	101.48	101.07	101.71	0					93	38	4	0	0	0	0.45077	1	26022	26022		19.439	0	1	965210			15118	6126	9894	10007	20652	20652					0.08692879016552979
PFIKQRHV	8	Unmodified	_PFIKQRHV_					0	0	0		ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8065795898438	2	512.806168	1023.59778	0.26838	0.00013763	0.11088	5.6858E-05	0.37926	0.00019449	512.8063209019859	102.84	0.47211	102.84	102.54	103.01	0					44	31	2	0	0	0	0.53494	1	26393	26393		4.756	0	1	88149			15119	6126	9894	10007	20653	20653					0.08692879016552979
PFIKQRHV	8	Unmodified	_PFIKQRHV_					0	0	0		ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.80615234375	2	512.806168	1023.59778	0.24504	0.00012566	0.38774	0.00019884	0.63278	0.00032449	512.8064988409157	103.13	0.22667	103.13	103.03	103.25	0					21	14	2	0	0	0	0.53858	1	26508	26508		2.3027	0.4585	1	57904			15120	6126	9894	10007	20654	20654					0.08692879016552979
PFIKQRHV	8	Unmodified	_PFIKQRHV_					0	0	0		ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.806168	1023.59778	0.42312	0.00021698	0.096915	4.9698E-05	0.52003	0.00026667	512.8063654410611	102.78	0.15353	102.82	102.72	102.88	0.040909	-0.0090395	-1.1429E-05	NaN	4.756	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41746			15121	6126	9894	10007							0.08692879016552979
PFIKQRHV	8	Unmodified	_PFIKQRHV_					0	0	0		ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	ENST00000357028.6_1_9:134735773-134735821:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.806168	1023.59778	0.41711	0.0002139	0.40978	0.00021014	0.82689	0.00042403	512.8064987136578	102.87	0.2002	102.91	102.87	103.07	0.040909	-0.10711	1.4065E-05	NaN	2.3027	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43378			15122	6126	9894	10007							0.08692879016552979
PFIKSQHELLF	11	Unmodified	_PFIKSQHELLF_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.5869445800781	3	453.587084	1357.73942	0.44454	0.00020164	-0.30622	-0.0001389	0.13832	6.2739E-05	453.5869269822055	56.139	0.54285	56.139	55.915	56.458	0					38	19	3	0	0	0	0.30144	1	12168	12168		17.863	12.46	1	351380			15123	4584	9895	10008	20655	20655					0.07486207528359046
PFIKSQHELLF	11	Unmodified	_PFIKSQHELLF_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.5869445800781	3	453.587084	1357.73942	0.14652	6.6459E-05	-0.044622	-2.024E-05	0.1019	4.6219E-05	453.58687711939723	56.043	0.48925	56.11	55.923	56.412	0.066452					39	18	4	0	0	0	0.27523	1	12013	12013		20.871	13.834	1	463420			15124	4584	9895	10008	20656	20656					0.07486207528359046
PFINDAGCVAL	11	Unmodified	_PFINDAGCVAL_					0	0	0			REV__ENST00000299697.11_1_16:66545117-66545318:-|nuORF	REV__ENST00000299697.11_1_16:66545117-66545318:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2797241210938	2	560.278792	1118.54303	-0.035525	-1.9904E-05	1.4978	0.00083917	1.4622	0.00081927	560.2791520143348	32.744	0.32667	32.744	32.658	32.985	0					27	13	3	0	0	0	0.27921	1	5120	5120		20.415	0	1	72278	+		15125	11340	9896	10009	20657	20657					-0.011499206370217507
PFISEGTTLK	10	Unmodified	_PFISEGTTLK_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2836303710938	2	546.800414	1091.58628	0.38335	0.00020961	-0.066112	-3.615E-05	0.31723	0.00017346	546.8004971864367	62.362	0.99035	62.435	62.086	63.076	0.072701					96	35	4	0	0	0	0.25965	1	14103	14103		26.884	1.4843	1	1950200			15126	1537	9897	10010	20658	20658					0.04414592411899321
PFIVDLITF	9	Unmodified	_PFIVDLITF_					0	0	0		ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3067016601562	2	532.804968	1063.59538	0.61775	0.00032914	-0.091632	-4.8822E-05	0.52612	0.00028032	532.8047430661909	100.97	0.61783	101.02	100.74	101.36	0.042839					74	36	3	0	0	0	0.33704	1	25766	25766		1.8442	0	1	214280			15127	2338	9898	10011	20659	20659					0.06612985768219914
PFKHLILII	9	Unmodified	_PFKHLILII_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2581176757812	2	547.360245	1092.70594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.691	1	25.782	25.282	26.282	0.091507								0	0	0	0.29525	1	2919	2919		0	0	1		+		15128	8078	9899	10012	20660	20660					0.16329250547141783
PFKHLILII	9	Unmodified	_PFKHLILII_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.345947265625	2	547.360245	1092.70594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.31	113.81	114.81	0.013336								0	0	0	0.29525	1	29099	29099		0	0	1		+		15129	8078	9899	10012	20661	20661					0.16329250547141783
PFKKKIKDVL	10	Unmodified	_PFKKKIKDVL_					0	0	0			REV__tr|U7T8B2|U7T8B2_FUSNUArsRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00152PE=4SV=1	REV__tr|U7T8B2|U7T8B2_FUSNUArsRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00152PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.24273681640625	3	405.932303	1214.77508	-0.18083	-7.3403E-05	1.3194	0.0005356	1.1386	0.0004622	405.9327520255123	33.574	0.82528	33.648	33.347	34.173	0.074322					53	33	2	0	0	0	0.3181	1	5232	5232		3.5871	2.1319	1	15846	+		15130	13320	9900	10013	20662	20662					0.17628289776030215
PFKLFWERF	9	Unmodified	_PFKLFWERF_					0	0	0			REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.0815124511719	3	423.897481	1268.67061	0.36112	0.00015308	-0.647	-0.00027426	-0.28588	-0.00012118	423.89710327190795	52.77	0.36105	52.77	52.584	52.945	0					17	12	2	0	0	0	0.25809	1	11189	11189		1.1933	0.17977	1	49264	+		15131	12762	9901	10014	20663	20663					0.04702588019290488
PFKLFWERF	9	Unmodified	_PFKLFWERF_					0	0	0			REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	423.897481	1268.67061	0.16658	7.0612E-05	-0.45226	-0.00019171	-0.28568	-0.0001211	423.8972095372959	52.71	0.26857	52.777	52.665	52.934	0.067173	0.0033114	0.00010815	NaN	1.1933	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73199	+		15132	12762	9901	10014							0.04702588019290488
PFKNCCCCF	9	Unmodified	_PFKNCCCCF_					0	0	0			REV__MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|17|2|anti-sense	REV__MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|17|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.31884765625	2	532.694669	1063.37478	0.59656	0.00031779	-3.7466	-0.0019958	-3.15	-0.001678	532.6927775818212	71.248	0.22118	71.306	71.157	71.378	0.058578					11	7	2	0	0	0	0.25809	1	16650	16650		2.3027	0.4585	1	79208	+		15133	12736	9902	10015	20664	20664					-0.15436765418371579
PFKQWIKT	8	Unmodified	_PFKQWIKT_					0	0	0		SLITRK3|p.E578K|1|0.09|ENSG00000121871|chr3:165189099-165189099|C/T|missense_variant	SLITRK3|p.E578K|1|0.09|ENSG00000121871|chr3:165189099-165189099|C/T|missense_variant	SLITRK3|p.E578K|1|0.09|ENSG00000121871|chr3:165189099-165189099|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2914428710938	2	524.302927	1046.5913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.302	1	44.391	43.891	44.891	0.088924								0	0	0	0.38822	1	8463	8463		4.756	0.81161	1				15134	13372	9903	10016	20665	20665					0.06986941065179053
PFKRRRRRAQT	11	Unmodified	_PFKRRRRRAQT_					0	0	0			REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF	REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.29937744140625	3	491.299153	1470.87563	-0.050111	-2.462E-05	0.51398	0.00025252	0.46386	0.0002279	491.2992791663712	107.5	0.32225	107.5	107.29	107.62	0					114	32	4	0	0	0	0.41731	1	27742	27742		0.36667	0.27183	1	922240	+		15135	11416	9904	10017	20666	20666					0.15902759602272454
PFKWIPMY	8	Unmodified	_PFKWIPMY_					0	0	0			REV__nc|ENSG00000141736|P04626-5|ERBB2	REV__nc|ENSG00000141736|P04626-5|ERBB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2811889648438	2	541.280606	1080.54666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.481	1	98.481	97.981	98.981	0								0	0	0	0.38822	1	25083	25083		0.79363	0	1		+		15136	9414	9905	10018	20667	20667					0.009607939274701494
PFLHLMMQL	9	Unmodified	_PFLHLMMQL_					0	0	0		ENST00000539526.5_1_11:117708658-117708883:-|nuORF	ENST00000539526.5_1_11:117708658-117708883:-|nuORF	ENST00000539526.5_1_11:117708658-117708883:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2993774414062	2	565.298473	1128.58239	0.31385	0.00017742	0.56256	0.00031802	0.87641	0.00049544	565.2986330059878	94.672	0.84154	94.672	94.315	95.157	0					55	34	2	0	0	0	0.25209	1	23893	23893		12.532	0.29089	1	302490			15137	7056	9906	10019	20668	20668					0.023245081128607126
PFLLLYFL	8	Unmodified	_PFLLLYFL_					0	0	0			REV__ENST00000530724.1_1_11:6471537-6472266:-|nuORF	REV__ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8076171875	2	513.307147	1024.59974	0.44762	0.00022977	1.6294	0.00083641	2.0771	0.0010662	513.3080429148788	102.13	0.26846	102.18	102.05	102.31	0.042656					22	19	2	0	0	0	0.3576	1	26022	26022		6.3541	0	1	79790	+		15138	12355	9907	10020	20669	20669					0.08842494981786331
PFLLLYFL	8	Unmodified	_PFLLLYFL_					0	0	0			REV__ENST00000530724.1_1_11:6471537-6472266:-|nuORF	REV__ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	513.307147	1024.59974	0.30472	0.00015642	1.2265	0.00062958	1.5312	0.000786	513.3079967139588	102.37	0.046913	102.37	102.36	102.4	0	0.096748	-0.00035291	NaN	6.3541	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27874	+		15139	12355	9907	10020							0.08842494981786331
PFLPASNLF	9	Unmodified	_PFLPASNLF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.28460693359375	2	503.273835	1004.53312	0.47729	0.00024021	0.24961	0.00012562	0.72689	0.00036583	503.2740552505433	83.481	0.46622	83.481	83.312	83.778	0					27	15	3	0	0	0	0.2094	1	20563	20563		22.736	0	1	104010			15140	2284	9908	10021	20670	20670					0.03103259419913229
PFLPASNLF	9	Unmodified	_PFLPASNLF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.2845458984375	2	503.273835	1004.53312	0.23862	0.00012009	0.45846	0.00023073	0.69707	0.00035082	503.2740406627354	83.442	0.44758	83.464	83.304	83.751	0.021744					27	15	2	0	0	0	0.2094	1	20396	20396		22.736	0	1	135740			15141	2284	9908	10021	20671	20671					0.03103259419913229
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.8081665039062	2	576.808042	1151.60153	0.29311	0.00016907	0.26709	0.00015406	0.5602	0.00032313	576.8079650082528	95.786	0.63139	95.786	95.604	96.235	0					97	30	4	0	0	0	0.00079876	2	24287	24287;24326		92.653	0	1	875510			15142	2284	9909	10022	20672;20673	20672					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.8084106445312	2	576.808042	1151.60153	0.59796	0.00034491	0.14683	8.4695E-05	0.7448	0.00042961	576.8080953743836	97.606	0.71032	97.606	97.461	98.171	0					87	36	4	0	0	0	0.014069	1	24839	24839		72.968	0	1	595980			15143	2284	9909	10022	20674	20674					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8084106445312	2	576.808042	1151.60153	0.60749	0.0003504	0.065427	3.7739E-05	0.67291	0.00038814	576.8080580784065	97.587	0.82677	97.628	97.36	98.187	0.040855					127	43	4	0	0	0	0.00079876	3	24633	24633;24672;24718		92.653	0	1	392490			15144	2284	9909	10022	20675;20676;20677	20675					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8081665039062	2	576.808042	1151.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.665	1	95.704	95.204	96.204	0.038872								0	0	0	0.0088205	1	24071	24071		82.529	0	1				15145	2284	9909	10022	20678	20678					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8080444335938	2	576.808042	1151.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.815	1	95.854	95.354	96.354	0.038872								0	0	0	0.061602	1	24117	24117		55.503	0	1				15146	2284	9909	10022	20679	20679					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.80810546875	2	576.808042	1151.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.96	1	95.999	95.499	96.499	0.039772								0	0	0	0.050215	1	24160	24160		60.074	0	1				15147	2284	9909	10022	20680	20680					0.03179503999763256
PFLPKLREV	9	Unmodified	_PFLPKLREV_					0	0	0			REV__ENSG00000185215|ENST00000560869|TNFAIP2	REV__ENSG00000185215|ENST00000560869|TNFAIP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8377685546875	2	549.837134	1097.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.85	1	109.85	109.35	110.35	0								0	0	0	0.25992	1	28254	28254		7.2892	0.18751	1		+		15148	10663	9910	10023	20681	20681					0.11479185645021062
PFLPKPLFF	9	Unmodified	_PFLPKPLFF_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3260498046875	2	553.325871	1104.63719	0.94591	0.0005234	-0.45709	-0.00025292	0.48882	0.00027048	553.3255228807536	80.761	0.65961	80.761	80.513	81.173	0					49	22	3	0	0	0	0.030375	1	19710	19710		50.855	29.984	1	231660			15149	3751	9911	10024	20682	20682					0.08905586247419706
PFLPKPLFF	9	Unmodified	_PFLPKPLFF_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.326171875	2	553.325871	1104.63719	0.83293	0.00046088	-0.16625	-9.199E-05	0.66668	0.00036889	553.3255762120644	80.778	0.60312	80.802	80.561	81.164	0.023605					47	20	3	0	0	0	0.011655	2	19521	19521;19572		64.236	43.365	1	280910			15150	3751	9911	10024	20683;20684	20683					0.08905586247419706
PFLSFEEDPR	10	Unmodified	_PFLSFEEDPR_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.7957763671875	2	618.798403	1235.58225	-0.71076	-0.00043981	-2.5685	-0.0015894	-3.2792	-0.0020292	618.7964203141462	42.861	0.75913	42.861	42.599	43.358	0					58	25	3	0	0	0	0.46208	1	8291	8291		2.4985	0.41248	1	55226			15151	3662	9912	10025	20685	20685					-0.02611497081829839
PFLSKVKLIYY	11	Unmodified	_PFLSKVKLIYY_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.6082458496094	3	457.607596	1369.80096	0.67482	0.0003088	0.83572	0.00038243	1.5105	0.00069123	457.60781129591237	92.505	1.5347	92.505	91.927	93.462	0					141	58	3	0	0	0	0.41309	1	23456	23456		1.3296	0.82369	1	222480			15152	5690	9913	10026	20686	20686					0.13085139227678155
PFLTFSIPK	9	Unmodified	_PFLTFSIPK_					0	0	0			REV__ENST00000552279.1_1_12:58150872-58151028:+|nuORF	REV__ENST00000552279.1_1_12:58150872-58151028:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2879028320312	2	525.305136	1048.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.709	1	66.709	66.209	67.209	0								0	0	0	0.23884	1	15407	15407		11.64	3.047	1		+		15153	12442	9914	10027	20687	20687					0.07336405488081255
PFLTWRDVQ	9	Unmodified	_PFLTWRDVQ_					0	0	0		nc|ENSG00000099139|Q92824-2|PCSK5;nc|ENSG00000099139|Q92824|PCSK5;ENSG00000099139|ENST00000674117|PCSK5	nc|ENSG00000099139|Q92824-2|PCSK5	nc|ENSG00000099139|Q92824-2|PCSK5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8038330078125	2	581.306198	1160.59784	0.10238	5.9516E-05	-1.5446	-0.00089787	-1.4422	-0.00083836	581.3057010291435	106.5	0.28699	106.5	106.44	106.72	0					60	27	3	0	0	0	0.21603	1	27475	27475		20.454	11.071	1	249320			15154	1118	9915	10028	20688	20688					0.023968342258967823
PFNSLYEPYC	10	Unmodified	_PFNSLYEPYC_					0	0	0			REV__ENST00000395710.5_1_4:76871905-76902632:-|nuORF	REV__ENST00000395710.5_1_4:76871905-76902632:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7678833007812	2	616.768257	1231.52196	-0.46855	-0.00028899	0.30939	0.00019082	-0.15917	-9.817E-05	616.7685039937844	39.505	0.89394	39.505	39.03	39.924	0					46	32	2	0	0	0	0.47318	1	7034	7034		0.40072	0	1	62321	+		15155	10893	9916	10029	20689	20689					-0.08453930736550319
PFPLMYSYY	9	Unmodified	_PFPLMYSYY_					0	0	0		nc|ENSG00000147036|Q6ZV70-2|LANCL3;ENSG00000147036|ENST00000378619|LANCL3	nc|ENSG00000147036|Q6ZV70-2|LANCL3	nc|ENSG00000147036|Q6ZV70-2|LANCL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2857055664062	2	590.772811	1179.53107	-0.11436	-6.7559E-05	0.21572	0.00012744	0.10136	5.9882E-05	590.7729439185596	40.204	1.3355	40.204	39.661	40.996	0					81	46	2	0	0	0	0.34646	1	7542	7542		0.6015	0	1	53320			15156	3309	9917	10030	20690	20690					-0.05151537380220361
PFPRSLRPA	9	Unmodified	_PFPRSLRPA_					0	0	0		ENST00000325954.8_2_12:120972163-120972457:+|nuORF	ENST00000325954.8_2_12:120972163-120972457:+|nuORF	ENST00000325954.8_2_12:120972163-120972457:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.7882690429688	2	520.803626	1039.5927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.33	1	101.38	100.88	101.88	0.042656								0	0	0	0.25992	1	25797	25797		7.2892	0	1				15157	6042	9918	10031	20691	20691					0.07448575153944148
PFPSDNLVS	9	Unmodified	_PFPSDNLVS_					0	0	0			REV__ENSG00000196199|ENST00000361479|MPHOSPH8	REV__ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2440490722656	2	488.242732	974.470912	0.062466	3.0499E-05	1.8514	0.00090392	1.9138	0.00093442	488.2434174873325	89.392	0.37129	89.392	89.219	89.59	0					24	13	3	0	0	0	0.32375	1	22363	22363		3.5965	1.019	1	99192	+		15158	10806	9919	10032	20692	20692					-0.017345117190984638
PFPVDFTI	8	Unmodified	_PFPVDFTI_					0	0	0		nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF;nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-2|LAMB4	nc|ENSG00000091128|A4D0S4-2|LAMB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.23260498046875	2	468.247286	934.48002	-0.20179	-9.4488E-05	-0.95674	-0.00044799	-1.1585	-0.00054248	468.2467427859246	31.27	1.0627	31.27	30.812	31.875	0					82	48	2	0	0	0	0.3576	1	4745	4745		2.3027	0	1	58551			15159	1055	9920	10033	20693	20693					0.010158816372381807
PFPVEQAGKEQ	11	Unmodified	_PFPVEQAGKEQ_					0	0	0			REV__nc|ENSG00000151623|P08235-2|NR3C2	REV__nc|ENSG00000151623|P08235-2|NR3C2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.90576171875	3	410.543544	1228.6088	0.29439	0.00012086	-1.5044	-0.00061763	-1.21	-0.00049677	410.5429254747955	35.374	0.67372	35.374	34.944	35.617	0					42	23	2	0	0	0	0.31072	1	5961	5961		4.7159	1.1289	1	35546	+		15160	9651	9921	10034	20694	20694					0.003641918095354413
PFPVEQAGKEQ	11	Unmodified	_PFPVEQAGKEQ_					0	0	0			REV__nc|ENSG00000151623|P08235-2|NR3C2	REV__nc|ENSG00000151623|P08235-2|NR3C2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.90576171875	3	410.543544	1228.6088	0.35431	0.00014546	0.35948	0.00014758	0.71379	0.00029304	410.54365257294614	35.922	1.4221	35.922	35.561	36.983	0					85	54	3	0	0	0	0.31072	1	5961	5961		4.7159	2.0847	1	54492	+		15161	9651	9921	10034	20695	20695					0.003641918095354413
PFPYRYTW	8	Unmodified	_PFPYRYTW_					0	0	0		ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	ENST00000532739.1_1_16:16450692-16458759:+|nuORF;nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3057861328125	2	565.276909	1128.53927	0.2526	0.00014279	2.0428	0.0011548	2.2954	0.0012975	565.7790400090626	71.561	0.4511	71.561	71.36	71.811	0					29	15	3	0	0	0	0.3576	1	16827	16827		7.9102	0	1	82234			15162	7443;7034	9922	10035	20696	20696					-0.01986222348591582
PFQLHCMRCQ	10	Unmodified	_PFQLHCMRCQ_					0	0	0			REV__PATE1|p.G57A|1|0.4|ENSG00000171053|chr11:125747745-125747745|G/C|missense_variant	REV__PATE1|p.G57A|1|0.4|ENSG00000171053|chr11:125747745-125747745|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.7828979492188	2	631.783195	1261.55184	0.012511	7.9045E-06	-0.52252	-0.00033012	-0.51001	-0.00032222	631.7830428988705	90.491	1.2203	90.525	90.087	91.307	0.034065					148	48	5	0	0	0	0.41688	1	22468	22468		10.074	0.6908	1	1480500	+		15163	10237	9923	10036	20697	20697					-0.06847593543852781
PFRCAKCG	8	Unmodified	_PFRCAKCG_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.1972961425781	2	441.209658	880.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.719	1	87.749	87.249	88.249	0.030037								0	0	0	0.38822	1	21651	21651		2.8892	0	1				15164	5290	9924	10037	20698	20698					-0.04022322366495246
PFRDKYQE	8	Unmodified	_PFRDKYQE_					0	0	0			REV__tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	REV__tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.27587890625	2	541.766906	1081.51926	-0.4856	-0.00026308	-0.58302	-0.00031586	-1.0686	-0.00057894	541.7663999293259	41.382	0.82196	41.382	41.146	41.968	0					53	29	3	0	0	0	0.35759	1	7868	7868		9.3474	0.75416	1	121810	+		15165	13236	9925	10038	20699	20699					-0.018240180791963212
PFSELESML	9	Unmodified	_PFSELESML_					0	0	0			REV__ENST00000435616.5_1_2:174224078-174228757:+|nuORF	REV__ENST00000435616.5_1_2:174224078-174228757:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3081665039062	2	526.752075	1051.4896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.518	1	72.574	72.074	73.074	0.055939								0	0	0	0.27613	1	17020	17020		3.9444	0	1		+		15166	9493	9926	10039	20700	20700					-0.0340871813953072
PFSFGRHF	8	Unmodified	_PFSFGRHF_					0	0	0			REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF	REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7499084472656	2	497.748319	993.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.224	1	96.224	95.724	96.724	0								0	0	0	0.38822	1	24398	24398		9.3474	1.4373	1		+		15167	10846	9927	10040	20701	20701					-0.014916448342773947
PFSGFPSS	8	Unmodified	_PFSGFPSS_					0	0	0		ENST00000539563.5_1_3:115528395-115528695:-|nuORF	ENST00000539563.5_1_3:115528395-115528695:-|nuORF	ENST00000539563.5_1_3:115528395-115528695:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	413.1935119628906	2	413.192511	824.370469	0.57795	0.0002388	1.0585	0.00043735	1.6364	0.00067615	413.1932734548064	78.807	5.4809	78.807	78.205	83.686	0					390	190	5	0	0	0	0.53858	1	19301	19301		2.3027	0	1	5117500			15168	7057	9928	10041	20702	20702					-0.04874123982085621
PFSKPFNEI	9	Unmodified	_PFSKPFNEI_					0	0	0			REV__tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	REV__tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.79833984375	2	539.782025	1077.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.452	1	55.452	54.952	55.952	0								0	0	0	0.22204	1	11975	11975		14.838	0.93222	1		+		15169	13153	9929	10042	20703	20703					0.013823405859966442
PFSPLAPEPVL	11	Unmodified	_PFSPLAPEPVL_					0	0	0		nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89	nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-2|C6orf89	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8269653320312	2	583.826432	1165.63831	0.98281	0.00057379	-0.25154	-0.00014685	0.73127	0.00042694	583.8262978349203	81.482	0.63702	81.482	81.173	81.81	0					50	20	3	0	0	0	0.28838	1	19924	19924		19.362	14.465	1	275250			15170	5386	9930	10043	20704	20704					0.06211755825665932
PFSQRSEMM	9	Unmodified	_PFSQRSEMM_					0	0	0		ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3056030273438	2	556.746802	1111.47905	0.64056	0.00035663	0.60185	0.00033508	1.2424	0.0006917	556.7472033301102	77.046	0.38027	77.08	76.848	77.229	0.034477					20	13	2	0	0	0	0.24263	1	18434	18434		12.532	0	1	156120			15171	3895	9931	10044	20705	20705					-0.07223024065615391
PFSQRSEMM	9	Unmodified	_PFSQRSEMM_					0	0	0		ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	556.746802	1111.47905	0.46963	0.00026146	1.8689	0.0010405	2.3385	0.001302	556.7478648115671	77.137	0.39363	77.137	76.838	77.231	0	0.02857	0.00081007	NaN	12.532	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273750			15172	3895	9931	10044							-0.07223024065615391
PFSSNPGL	8	Unmodified	_PFSSNPGL_					0	0	0			REV__ENST00000301067.11_1_12:49431153-49431393:-|nuORF	REV__ENST00000301067.11_1_12:49431153-49431393:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.21087646484375	2	409.705786	817.397018	0.089415	3.6634E-05	0.03583	1.468E-05	0.12525	5.1314E-05	409.70564392606406	51.078	1.0904	51.148	50.523	51.613	0.069874					50	41	2	0	0	0	0.3576	1	10399	10399		6.7232	0.96273	1	43155	+		15173	11344	9932	10045	20706	20706					-0.018984350907544467
PFSSNPGL	8	Unmodified	_PFSSNPGL_					0	0	0			REV__ENST00000301067.11_1_12:49431153-49431393:-|nuORF	REV__ENST00000301067.11_1_12:49431153-49431393:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	409.705786	817.397018	0.36856	0.000151	-0.52363	-0.00021453	-0.15507	-6.3532E-05	409.70550324120353	50.994	1.0328	50.994	50.595	51.628	0	-0.077133	-0.00018623	NaN	6.7232	55	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49112	+		15174	11344	9932	10045							-0.018984350907544467
PFSVPLSPL	9	Unmodified	_PFSVPLSPL_					0	0	0			REV__ENSG00000169715|ENST00000330439|MT1E	REV__ENSG00000169715|ENST00000330439|MT1E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7759094238281	2	478.776211	955.537869	0.098076	4.6957E-05	0.1644	7.8709E-05	0.26247	0.00012567	478.77619505429016	96.294	0.74661	96.333	96.037	96.784	0.039772					112	39	4	0	0	0	0.29576	1	24372	24372		7.2892	7.2892	1	941940	+		15175	10184	9933	10046	20707	20707					0.058321435626680795
PFSWGTAEYD	10	Unmodified	_PFSWGTAEYD_					0	0	0		MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2613525390625	2	586.748379	1171.4822	0.73605	0.00043188	-1.1818	-0.00069343	-0.44577	-0.00026155	586.7476350861328	93.614	0.9156	93.614	92.982	93.898	0					72	35	3	0	0	0	0.31691	1	23674	23674		7.2892	7.2892	1	139660			15176	4191	9934	10047	20708	20708					-0.09667734415597806
PFSWGTAEYD	10	Unmodified	_PFSWGTAEYD_					0	0	0		MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	586.748379	1171.4822	0.8221	0.00048236	-1.5059	-0.00088357	-0.68377	-0.0004012	586.7474597337516	93.546	0.75698	93.583	93.093	93.85	0.037369	-0.015514	-0.00022713	NaN	7.2892	57	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120960			15177	4191	9934	10047							-0.09667734415597806
PFSYLFSEI	9	Unmodified	_PFSYLFSEI_					0	0	0		ENST00000356805.8_1_2:54895724-54895814:+|nuORF	ENST00000356805.8_1_2:54895724-54895814:+|nuORF	ENST00000356805.8_1_2:54895724-54895814:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7766723632812	2	551.776408	1101.53826	0.59555	0.00032861	0.94816	0.00052317	1.5437	0.00085178	551.7763756051064	81.63	1.0151	81.652	81.255	82.271	0.021866					109	36	5	0	0	0	0.065541	1	19886	19886		39.957	5.8549	1	1111400			15178	6124	9935	10048	20709	20709					-0.008444815081475099
PFTCKEEQK	9	Unmodified	_PFTCKEEQK_					0	0	0		nc|ENSG00000213762|P52741-2|ZNF134;ENSG00000213762|ENST00000396161|ZNF134	nc|ENSG00000213762|P52741-2|ZNF134	nc|ENSG00000213762|P52741-2|ZNF134	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7532958984375	2	555.268424	1108.5223	0.45823	0.00025444	-0.9463	-0.00052545	-0.48808	-0.00027101	555.2677418761375	87.399	0.54449	87.399	87.163	87.708	0					40	20	3	0	0	0	0.2491	1	21803	21803		8.5933	0	1	162850			15179	5556	9936	10049	20710	20710					-0.027625110167036837
PFTLSGHFPR	10	Unmodified	_PFTLSGHFPR_					0	0	0		ENST00000475006.1_1_9:140262369-140269195:-|nuORF	ENST00000475006.1_1_9:140262369-140269195:-|nuORF	ENST00000475006.1_1_9:140262369-140269195:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.8065185546875	2	579.806365	1157.59818	0.24727	0.00014337	-0.22237	-0.00012893	0.024895	1.4434E-05	579.806306251134	39.532	0.77927	39.621	39.435	40.214	0.088562					76	30	4	0	0	0	0.44496	1	7055	7055		5.7319	0	1	245910			15180	6704	9937	10050	20711	20711					0.025682539457420717
PFTQRGHI	8	Unmodified	_PFTQRGHI_					0	0	0		ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.76141357421875	2	478.259051	954.503549	0.098234	4.6981E-05	0.6015	0.00028767	0.69973	0.00033465	478.2592619537829	88.537	0.51403	88.567	88.329	88.843	0.030037					46	21	3	0	0	0	0.42348	2	21909	21859;21909		23.148	1.4018	1	193210			15181	5145	9938	10051	20712;20713	20713					0.024477401944295707
PFTQRGHI	8	Unmodified	_PFTQRGHI_					0	0	0		ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	478.259051	954.503549	0.1324	6.3323E-05	0.70734	0.00033829	0.83974	0.00040161	478.2592368856125	88.585	0.50038	88.585	88.317	88.817	0	0.0092357	7.722E-05	NaN	23.148	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184480			15182	5145	9938	10051							0.024477401944295707
PFTRYSTNI	9	Unmodified	_PFTRYSTNI_					0	0	0		ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7823486328125	2	549.782556	1097.55056	0.19995	0.00010993	-0.92258	-0.00050722	-0.72263	-0.00039729	549.7825838311526	46.375	0.86517	46.461	45.701	46.566	0.085621					79	36	3	0	0	0	0.32831	1	8863	8863		2.9952	0	1	220530			15183	5101	9939	10052	20714	20714					0.005685549548843483
PFVCWWRYWWH	11	Unmodified	_PFVCWWRYWWH_					0	0	0		ENST00000410111.7_1_2:86406577-86422494:-|nuORF	ENST00000410111.7_1_2:86406577-86422494:-|nuORF	ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7723388671875	3	555.923924	1664.74994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.926	1	29.926	29.426	30.426	0								0	0	0	0.34212	1	4275	4275		0	0	1				15184	6403	9940	10053	20715	20715					-0.05584088298201095
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7764892578125	2	554.776742	1107.53893	0.26493	0.00014698	0.065518	3.6348E-05	0.33045	0.00018332	554.7767043683766	71.896	2.3633	71.896	71.556	73.92	0					193	83	5	0	0	0	7.1494E-32	2	16940	16940;16988		234.68	183.83	1	5435500			15185	1803	9941	10054	20716;20717	20716					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2328491210938	2	554.776742	1107.53893	0.42411	0.00023528	-0.2506	-0.00013903	0.17351	9.6257E-05	554.7764795298493	74.146	0.45329	74.146	74.074	74.527	0					18	16	2	0	0	0	0.1478	1	17711	17711		34.102	13.231	1	94111			15186	1803	9941	10054	20718	20718					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.77685546875	2	554.776742	1107.53893	0.39527	0.00021929	-0.0001508	-8.3662E-08	0.39512	0.0002192	554.7766594713295	71.774	1.5865	71.83	71.54	73.126	0.055931					152	55	5	0	0	0	7.1494E-32	3	16803	16753;16803;17139		234.68	182.42	1	6544000			15187	1803	9941	10054	20719;20720;20721	20720					-0.010536420684275072
PFVEQFYF	8	Unmodified	_PFVEQFYF_					0	0	0			REV__nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	REV__nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2823486328125	2	538.758018	1075.50148	0.18191	9.8008E-05	-3.2884	-0.0017716	-3.1065	-0.0016736	539.2581382559896	35.701	0.75743	35.701	35.289	36.047	0					49	28	3	0	0	0	0.35759	1	5955	5955		9.3474	0.75416	1	39782	+		15188	12841	9942	10055	20722	20722					-0.03324733334056873
PFVESTKKFL	10	Unmodified	_PFVESTKKFL_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2872924804688	2	598.339707	1194.66486	0.47577	0.00028467	0.61967	0.00037077	1.0954	0.00065545	598.3398323178004	93.645	0.38637	93.645	93.462	93.848	0					21	14	2	0	0	0	0.31803	1	23563	23563		3.2813	1.2216	1	107040			15189	1511	9943	10056	20723	20723					0.0753144471698306
PFVESTKKFL	10	Unmodified	_PFVESTKKFL_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	598.339707	1194.66486	0.35342	0.00021147	0.12604	7.5415E-05	0.47946	0.00028688	598.3398007543508	93.659	0.33898	93.697	93.511	93.85	0.037369	0.025923	-0.00023843	NaN	6.2058	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134180			15190	1511	9943	10056							0.0753144471698306
PFVLWTQLS	9	Unmodified	_PFVLWTQLS_					0	0	0		ENST00000233813.4_1_2:217539197-217539506:-|nuORF	ENST00000233813.4_1_2:217539197-217539506:-|nuORF	ENST00000233813.4_1_2:217539197-217539506:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.8345947265625	2	545.800217	1089.58588	0.081161	4.4298E-05	0.38418	0.00020969	0.46535	0.00025399	546.3019671547861	48.903	0.14614	48.98	48.93	49.076	0.076603					6	5	2	0	0	0	0.24635	1	9842	9842		10.824	0	1	30894			15191	5818	9944	10057	20724	20724					0.044672174827155686
PFVRCVPLT	9	Unmodified	_PFVRCVPLT_					0	0	0			REV__nc|ENSG00000144559|Q96BW9|TAMM41	REV__nc|ENSG00000144559|Q96BW9|TAMM41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7892456054688	2	516.288963	1030.56337	0.30945	0.00015977	1.7435	0.00090015	2.053	0.0010599	516.7890135084843	50.754	0.92479	50.824	50.411	51.336	0.069878					102	34	4	0	0	0	0.28587	1	10486	10486		8.5933	0.68312	1	487150	+		15192	12806	9945	10058	20725	20725					0.04931294813445675
PFWHHKYHE	9	Unmodified	_PFWHHKYHE_					0	0	0			REV__ENSG00000159388|ENST00000290551|BTG2	REV__ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3041381835938	2	640.801614	1279.58868	0.088105	5.6458E-05	1.4631	0.00093757	1.5512	0.00099402	640.8023904393007	18.457	0.37025	18.547	18.347	18.717	0.089705					61	45	2	0	0	0	0.34704	1	1077	1077		0.52476	0	1	15609	+		15193	9152	9946	10059	20726	20726					-0.039935143397769934
PFYDMIHQAQ	10	Unmodified	_PFYDMIHQAQ_					0	0	0		CON__P17697	CON__P17697	CON__P17697	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.2868041992188	2	625.287148	1248.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.8	1	105.8	105.3	106.3	0								0	0	0	0.33892	1	27263	27263		1.4819	0	1			+	15194	221	9947	10060	20727	20727					-0.05459419751059613
PFYDMIHQAQ	10	Unmodified	_PFYDMIHQAQ_					0	0	0		CON__P17697	CON__P17697	CON__P17697	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.2876586914062	2	625.287148	1248.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.28	1	106.28	105.78	106.78	0								0	0	0	0.33892	1	27401	27401		1.4819	0	1			+	15195	221	9947	10060	20728	20728					-0.05459419751059613
PFYDMIHQAQ	10	Unmodified	_PFYDMIHQAQ_					0	0	0		CON__P17697	CON__P17697	CON__P17697	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.28662109375	2	625.287148	1248.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.81	1	105.84	105.34	106.34	0.029739								0	0	0	0.33892	1	27082	27082		1.4819	0	1			+	15196	221	9947	10060	20729	20729					-0.05459419751059613
PFYTVDITF	9	Unmodified	_PFYTVDITF_					0	0	0			REV__ENSG00000149635|ENST00000279028|OCSTAMP	REV__ENSG00000149635|ENST00000279028|OCSTAMP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7820434570312	2	551.776408	1101.53826	0.59555	0.00032861	0.94816	0.00052317	1.5437	0.00085178	551.7763756051064	81.63	1.0151	81.652	81.255	82.271	0.021866					109	36	5	0	0	0	0.29105	1	19742	19742		7.9102	0	1	1111400	+		15197	9619	9948	10061	20730	20730					-0.008444815081702473
PFYYGECWI	9	Unmodified	_PFYYGECWI_					0	0	0		ENST00000439441.1_1_19:35634180-35639646:+|nuORF	ENST00000439441.1_1_19:35634180-35639646:+|nuORF	ENST00000439441.1_1_19:35634180-35639646:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2562255859375	2	589.254785	1176.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.504	1	50.504	50.004	51.004	0								0	0	0	0.27427	1	10466	10466		4.3292	1.0479	1				15198	6517	9949	10062	20731	20731					-0.08616994557064572
PFYYIYTPI	9	Unmodified	_PFYYIYTPI_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-5|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-5|CHD1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8028564453125	2	588.802426	1175.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.78	1	105.81	105.31	106.31	0.029739								0	0	0	0.28527	1	27074	27074		2.0598	0	1		+		15199	9095	9950	10063	20732	20732					0.009526819056191016
PFYYQVYCDAE	11	Unmodified	_PFYYQVYCDAE_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.52886962890625	3	466.528794	1396.56455	0.12312	5.7439E-05	0.092504	4.3156E-05	0.21563	0.0001006	466.52876684738305	104.03	0.83521	104.03	103.79	104.62	0					249	79	4	0	0	0	0.38987	2	26830	26830;26874		6.6235	2.5068	1	1294300	+		15200	10139	9951	10064	20733;20734	20733					-0.11786580398961632
PFYYQVYCDAE	11	Unmodified	_PFYYQVYCDAE_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.52874755859375	3	466.528794	1396.56455	0.15383	7.1768E-05	0.066356	3.0957E-05	0.22019	0.00010273	466.5287706853385	104.15	0.89698	104.19	103.75	104.65	0.03791					239	86	4	0	0	0	0.40087	4	26535	26535;26608;26640;26676		4.1166	2.9018	1	1132300	+		15201	10139	9951	10064	20735;20736;20737;20738	20735					-0.11786580398961632
PGAAAEPRAL	10	Unmodified	_PGAAAEPRAL_					0	0	0		ENST00000253008.2_1_9:133556683-133557598:+|nuORF	ENST00000253008.2_1_9:133556683-133557598:+|nuORF	ENST00000253008.2_1_9:133556683-133557598:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7645568847656	2	476.764166	951.513779	-0.33763	-0.00016097	0.96089	0.00045812	0.62326	0.00029715	476.7645602949867	32.219	0.40737	32.293	32.127	32.534	0.07378					35	19	3	0	0	0	0.43214	1	4832	4832		8.1555	0.8663	1	37429			15202	5842	9952	10065	20739	20739					0.036083031289877
PGAALYRE	8	Unmodified	_PGAALYRE_					0	0	0			REV__VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	REV__VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.1875305175781	2	438.732335	875.450116	0.014217	6.2374E-06	0.64858	0.00028455	0.6628	0.00029079	438.7322772004475	40.09	0.37048	40.09	39.866	40.237	0					15	12	2	0	0	0	0.3576	1	7272	7272		0.79363	0	1	10356	+		15203	9905	9953	10066	20740	20740					0.007409426919025464
PGAKHQHH	8	Unmodified	_PGAKHQHH_					0	0	0		chr11:65897003-65900241|125|15.44|0.25|5.96|-|2|None,FOSL1|1	chr11:65897003-65900241|125|15.44|0.25|5.96|-|2|None,FOSL1|1	chr11:65897003-65900241|125|15.44|0.25|5.96|-|2|None,FOSL1|1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.2330322265625	2	456.233368	910.452182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.594	1	45.679	45.179	46.179	0.085617								0	0	0	0.38822	1	8853	8853		0.79363	0	1				15204	144	9954	10067	20741	20741					-0.0066258377962640225
PGARYTVL	8	Unmodified	_PGARYTVL_					0	0	0		nc|ENSG00000129968|Q96GS6-4|ABHD17A;ENST00000588598.5_1_19:1879918-1881565:-|nuORF;nc|ENSG00000129968|Q96GS6-3|ABHD17A;ENSG00000129968|ENST00000292577|ABHD17A	nc|ENSG00000129968|Q96GS6-4|ABHD17A	nc|ENSG00000129968|Q96GS6-4|ABHD17A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.7503967285156	2	438.750527	875.486502	0.13947	6.1195E-05	0.051851	2.2749E-05	0.19133	8.3944E-05	438.75041679592584	37.096	0.7306	37.18	36.839	37.57	0.084476					40	27	2	0	0	0	0.50815	1	6304	6304		11.64	0	1	71053			15205	2444	9955	10068	20742	20742					0.04377819588614784
PGARYTVL	8	Unmodified	_PGARYTVL_					0	0	0		nc|ENSG00000129968|Q96GS6-4|ABHD17A;ENST00000588598.5_1_19:1879918-1881565:-|nuORF;nc|ENSG00000129968|Q96GS6-3|ABHD17A;ENSG00000129968|ENST00000292577|ABHD17A	nc|ENSG00000129968|Q96GS6-4|ABHD17A	nc|ENSG00000129968|Q96GS6-4|ABHD17A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	438.750527	875.486502	0.13947	6.1195E-05	0.051851	2.2749E-05	0.19133	8.3944E-05	438.75041679592584	37.096	0.7306	37.18	36.839	37.57	0.084476	-0.00010001	0.00027146	NaN	11.64	40	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71053			15206	2444	9955	10068							0.04377819588614784
PGAYACPE	8	Unmodified	_PGAYACPE_					0	0	0			REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.16998291015625	2	404.170721	806.32689	0.29649	0.00011983	-2.7269	-0.0011021	-2.4304	-0.00098231	404.1699349951087	71.939	3.9579	71.939	71.669	75.627	0					297	144	5	0	0	0	0.53771	1	17689	17689		2.8892	0	1	15975000	+		15207	8058	9956	10069	20743	20743					-0.08402056750890097
PGCIQIVDDRT	11	Unmodified	_PGCIQIVDDRT_					0	0	0			REV__nc|ENSG00000135457|Q12800-2|TFCP2	REV__nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.8218994140625	2	608.803162	1215.59177	0.6712	0.00040863	-0.42683	-0.00025986	0.24437	0.00014877	608.8030230742507	64.472	0.51197	64.541	64.259	64.771	0.068909					24	18	2	0	0	0	0.22821	1	14633	14633		26.268	7.0112	1	74164	+		15208	9206	9957	10070	20744	20744					-0.0074005206793117395
PGDHTINAL	9	Unmodified	_PGDHTINAL_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17;REV__DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.8946228027344	2	469.240524	936.466495	-0.084546	-3.9672E-05	-0.003773	-1.7704E-06	-0.088319	-4.1443E-05	469.24044464044624	35.528	0.50837	35.607	35.435	35.943	0.078827					33	18	2	0	0	0	0.25699	1	5821	5821		3.5965	0.31518	1	55916	+		15209	10747;7889	9958	10071	20745	20745					-0.004279761419979877
PGEGGGRGKKR	11	Unmodified	_PGEGGGRGKKR_					0	0	0			REV__ENST00000355476.7_2_4:26322496-26364082:+|nuORF	REV__ENST00000355476.7_2_4:26322496-26364082:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.80078125	2	549.809971	1097.60539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.222	1	36.304	35.804	36.804	0.081715								0	0	0	0.34136	1	6033	6033		0.26902	0.26902	1		+		15210	11496	9959	10072	20746	20746					0.06048986546170454
PGEKPHERVRL	11	Unmodified	_PGEKPHERVRL_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B	REV__nc|ENSG00000089177|Q96L93-6|KIF16B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.5829772949219	3	439.917716	1316.73132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.47	1	53.535	53.035	54.035	0.06543								0	0	0	0.33897	1	11233	11233		1.1098	0.14748	1		+		15211	8294	9960	10073	20747	20747					0.08562073331586362
PGGAKQHI	8	Unmodified	_PGGAKQHI_					0	0	0			REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2276306152344	2	404.22722	806.439886	0.47335	0.00019134	-0.014213	-5.7451E-06	0.45914	0.0001856	404.22714024961334	37.311	1.0698	37.311	37.086	38.156	0					72	38	3	0	0	0	0.49441	2	6449	6449;6496		13.508	0	1	189390	+		15212	11606	9961	10074	20748;20749	20748					0.02892379757327035
PGGAKQHI	8	Unmodified	_PGGAKQHI_					0	0	0			REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2272644042969	2	404.22722	806.439886	0.076645	3.0982E-05	0.42918	0.00017349	0.50582	0.00020447	404.2273044426534	37.151	0.79224	37.236	37.046	37.838	0.084476					53	27	3	0	0	0	0.49441	1	6301	6301		13.508	0	1	193810	+		15213	11606	9961	10074	20750	20750					0.02892379757327035
PGGAKQHI	8	Unmodified	_PGGAKQHI_					0	0	0			REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2274169921875	2	404.22722	806.439886	0.076645	3.0982E-05	0.42918	0.00017349	0.50582	0.00020447	404.2273044426534	37.151	0.79224	37.236	37.046	37.838	0.084476					53	27	3	0	0	0	0.3576	1	6351	6351		4.756	0	1	193810	+		15214	11606	9961	10074	20751	20751					0.02892379757327035
PGGAKQHI	8	Unmodified	_PGGAKQHI_					0	0	0			REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	404.22722	806.439886	0.47335	0.00019134	-0.014213	-5.7451E-06	0.45914	0.0001856	404.22714024961334	37.311	1.0698	37.311	37.086	38.156	0	0.037786	-0.00019345	NaN	13.508	72	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189390	+		15215	11606	9961	10074							0.02892379757327035
PGGGGSGG	8	Unmodified	_PGGGGSGG_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|88|1|anti-sense;ENST00000422377.5_1_6:111804278-111804845:-|nuORF;ENSG00000138606|ENST00000690270|SHF;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A;nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|88|1|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|88|1|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2717895507812	1	545.231416	544.224139	0.27596	0.00015046	-2.0286	-0.001106	-1.7526	-0.00095558	545.2311899604638	52.154	0.23301	52.221	52.058	52.291	0.067173					12	8	2	0	0	0	0.3576	1	10854	10854		0.69038	0	1	31418			15216	692	9962	10075	20752	20752					-0.06620381427330813
PGGPGGGG	8	Unmodified	_PGGPGGGG_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000532635.5_1_11:67810750-67811081:+|nuORF;ENSG00000180340|ENST00000315323|FZD2;ENSG00000149499|ENST00000394773|EML3;nc|ENSG00000149499|Q32P44-2|EML3;EML3-INTS5|1|fusion;nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2	ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8369750976562	1	555.252151	554.244875	0.55383	0.00030752	-3.3215	-0.0018442	-2.7676	-0.0015367	555.2505120472842	83.875	0.34116	83.897	83.696	84.037	0.021744					15	11	2	0	0	0	0.3576	1	20473	20473		0.79363	0	1	100510			15217	1476;344	9963	10076	20753	20753					-0.05007791047671617
PGGPSSATGPL	11	Unmodified	_PGGPSSATGPL_					0	0	0		ENST00000578287.1_1_17:80350276-80350759:-|nuORF	ENST00000578287.1_1_17:80350276-80350759:-|nuORF	ENST00000578287.1_1_17:80350276-80350759:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.255615234375	2	470.740357	939.46616	0.11052	5.2028E-05	-0.18824	-8.8611E-05	-0.077714	-3.6583E-05	470.7400306680582	37.516	0.44957	37.516	37.25	37.7	0					22	15	2	0	0	0	0.39744	1	6549	6549		4.897	0.95262	1	20160			15218	7208	9964	10077	20754	20754					-0.005993958618546458
PGGPSSATGPL	11	Unmodified	_PGGPSSATGPL_					0	0	0		ENST00000578287.1_1_17:80350276-80350759:-|nuORF	ENST00000578287.1_1_17:80350276-80350759:-|nuORF	ENST00000578287.1_1_17:80350276-80350759:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	470.740357	939.46616	0.11052	5.2028E-05	-0.18824	-8.8611E-05	-0.077714	-3.6583E-05	470.7400306680582	37.516	0.44957	37.516	37.25	37.7	0	0	0	NaN	4.897	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20160			15219	7208	9964	10077							-0.005993958618546458
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.7463684082031	2	412.746111	823.477669	1.0162	0.00041944	-0.34301	-0.00014158	0.67321	0.00027786	412.7459013092638	80.269	1.3236	80.269	79.79	81.114	0					102	45	4	0	0	0	0.53423	1	19557	19557		5.2307	0	1	3762000	+		15220	8753	9965	10078	20755	20755					0.058868907427950035
PGKKPKKR	8	Unmodified	_PGKKPKKR_					0	0	0			REV__ENSG00000159658|ENST00000371933|EFCAB14	REV__ENSG00000159658|ENST00000371933|EFCAB14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.34942626953125	2	469.816536	937.618519	0.026214	1.2316E-05	0.046051	2.1636E-05	0.072266	3.3952E-05	469.81638547424006	110.96	0.27574	110.97	110.9	111.18	0.015671					58	40	2	0	0	0	0.3576	1	28304	28304		2.3027	1.5091	1	669160	+		15221	9832	9966	10079	20756	20756					0.14721469396215525
PGKKPKKR	8	Unmodified	_PGKKPKKR_					0	0	0			REV__ENSG00000159658|ENST00000371933|EFCAB14	REV__ENSG00000159658|ENST00000371933|EFCAB14	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	469.816536	937.618519	-0.18764	-8.8158E-05	0.45857	0.00021544	0.27093	0.00012729	469.81653574672447	110.99	0.30206	110.99	110.86	111.16	0	0.0088621	0.00013675	NaN	2.3027	72	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	883830	+		15222	9832	9966	10079							0.14721469396215525
PGKKVEPVPVT	11	Unmodified	_PGKKVEPVPVT_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.84326171875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.851	1	87.851	87.351	88.351	0								0	0	0	0.31149	1	21854	21854		10.8	1.4521	1				15223	2346	9967	10080	20757	20757					0.10690847091268552
PGKNQRAV	8	Unmodified	_PGKNQRAV_					0	0	0		nc|ENSG00000119411|Q5W0U4-2|BSPRY;ENST00000462085.1_1_9:116111859-116131917:+|nuORF;ENSG00000119411|ENST00000374183|BSPRY	nc|ENSG00000119411|Q5W0U4-2|BSPRY	nc|ENSG00000119411|Q5W0U4-2|BSPRY	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.2513732910156	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.086	1	76.086	75.586	76.586	0								0	0	0	0.38822	1	18267	18267		2.3027	0	1				15224	2069	9968	10081	20758	20758					0.048394536773685104
PGKRATRG	8	Unmodified	_PGKRATRG_					0	0	0			REV__ENST00000457484.6_1_7:1624903-1627631:+|nuORF	REV__ENST00000457484.6_1_7:1624903-1627631:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.75140380859375	2	421.751393	841.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.533	1	72.533	72.033	73.033	0								0	0	0	0.38822	1	17178	17178		0.69038	0	1		+		15225	11871	9969	10082	20759	20759					0.06114873397223164
PGKRGRPG	8	Unmodified	_PGKRGRPG_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.7463073730469	2	412.746111	823.477669	1.0162	0.00041944	-0.34301	-0.00014158	0.67321	0.00027786	412.7459013092638	80.269	1.3236	80.269	79.79	81.114	0					102	45	4	0	0	0	0.53858	1	19600	19600		2.3027	0	1	3762000			15226	645	9970	10083	20760	20760					0.05886890742806372
PGKRGRPG	8	Unmodified	_PGKRGRPG_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	412.74603271484375	2	412.746111	823.477669	0.42641	0.000176	0.17255	7.1218E-05	0.59896	0.00024722	412.74610867565116	80.215	1.0859	80.239	79.796	80.882	0.023613					96	38	4	0	0	0	0.53423	3	19334	19334;19379;19427		5.2307	0	1	2734700			15227	645	9970	10083	20761;20762;20763	20761					0.05886890742806372
PGKRQTSIA	9	Unmodified	_PGKRQTSIA_					0	0	0			REV__ENST00000438423.6_1_15:57579850-57580075:+|nuORF	REV__ENST00000438423.6_1_15:57579850-57580075:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774353027344	2	479.277441	956.540328	0.098532	4.7224E-05	0.19499	9.3454E-05	0.29352	0.00014068	479.27740589104303	78.777	3.1544	78.807	77.792	80.946	0.030159					352	111	4	0	0	0	0.32375	1	19114	19114		3.5965	3.5965	1	1861400	+		15228	11874	9971	10084	20764	20764					0.060319920203255606
PGLSEDMGFFN	11	Unmodified	_PGLSEDMGFFN_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.263671875	2	607.263339	1212.51212	0.87837	0.0005334	0.41612	0.00025269	1.2945	0.0007861	607.2632162345438	99.302	0.3568	99.345	99.177	99.534	0.042839					43	23	2	0	0	0	0.38315	1	25184	25184		8.1555	2.4237	1	100700	+		15229	10994	9972	10085	20765	20765					-0.08563118741903963
PGLSEDMGFFN	11	Unmodified	_PGLSEDMGFFN_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	607.263339	1212.51212	0.71454	0.00043391	2.346	0.0014246	3.0605	0.0018585	607.2635038050499	99.397	0.36309	99.397	99.193	99.556	0	0.026352	0.0016173	NaN	8.1555	61	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179740	+		15230	10994	9972	10085							-0.08563118741903963
PGLSEDMGFFN	11	Unmodified	_PGLSEDMGFFN_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	607.263339	1212.51212	0.87837	0.0005334	0.41612	0.00025269	1.2945	0.0007861	607.2632162345438	99.302	0.3568	99.345	99.177	99.534	0.042839	-0.026352	-0.00072659	NaN	8.1555	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100700	+		15231	10994	9972	10085							-0.08563118741903963
PGLTKEQLE	9	Unmodified	_PGLTKEQLE_					0	0	0		ENST00000493727.5_1_13:115047468-115051873:+|nuORF;ENST00000413731.1_1_17:16649540-16650074:-|nuORF;ENST00000480362.5_1_13:115047204-115067220:+|nuORF;nc|ENSG00000169062|Q9H1J1-2|UPF3A;ENSG00000169062|ENST00000375299|UPF3A	ENST00000493727.5_1_13:115047468-115051873:+|nuORF	ENST00000493727.5_1_13:115047468-115051873:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7587585449219	2	507.776939	1013.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.587	1	49.587	49.087	50.087	0								0	0	0	0.22204	1	10187	10187		14.838	3.198	1				15232	4323	9973	10086	20766	20766					0.03309732860748227
PGMRNPRILR	10	Unmodified	_PGMRNPRILR_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.280517578125	2	605.353491	1208.69243	0.66629	0.00040334	-0.99033	-0.0005995	-0.32404	-0.00019616	605.3528863976981	53.67	0.38526	53.67	53.513	53.898	0					27	13	3	0	0	0	0.31838	1	11384	11384		1.4819	0.79152	1	127820			15233	7215	9974	10087	20767	20767					0.09643069496223688
PGMRNPRILR	10	Unmodified	_PGMRNPRILR_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	605.353491	1208.69243	0.80019	0.0004844	-0.63681	-0.00038549	0.16338	9.8904E-05	605.3531538710488	53.649	0.28879	53.714	53.578	53.866	0.065426	0.022036	0.00029385	NaN	1.4819	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139700			15234	7215	9974	10087							0.09643069496223688
PGNCSLLL	8	Unmodified	_PGNCSLLL_					0	0	0		ENST00000480196.2_1_21:33705566-33706642:-|nuORF	ENST00000480196.2_1_21:33705566-33706642:-|nuORF	ENST00000480196.2_1_21:33705566-33706642:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.7183532714844	2	408.717839	815.421125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.967	1	82.989	82.489	83.489	0.021744								0	0	0	0.38822	1	20205	20205		5.7604	0	1				15235	6741	9975	10088	20768	20768					0.006030820712680907
PGNFFHVL	8	Unmodified	_PGNFFHVL_					0	0	0		OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7452087402344	2	465.745245	929.475937	0.00037655	1.7537E-07	0.13708	6.3844E-05	0.13746	6.4019E-05	465.7451116384012	58.448	0.83553	58.518	58.184	59.02	0.070477					50	29	2	0	0	0	0.52502	2	12812	12703;12812		9.3474	4.1168	1	290790			15236	1494	9976	10089	20769;20770	20770					0.008378369341926373
PGPDGAGGMHE	11	Unmodified	_PGPDGAGGMHE_					0	0	0		ENST00000537686.5_1_17:73240754-73242614:-|nuORF	ENST00000537686.5_1_17:73240754-73242614:-|nuORF	ENST00000537686.5_1_17:73240754-73242614:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2413330078125	2	512.711273	1023.40799	-0.10761	-5.5173E-05	1.0632	0.00054512	0.9556	0.00048995	512.7115288626428	28.049	0.39053	28.131	27.913	28.304	0.082134					47	22	3	0	0	0	0.3108	1	3559	3559		2.9952	2.9952	1	44457			15237	7048	9977	10090	20771	20771					-0.10277400778772972
PGPLSKQGS	9	Unmodified	_PGPLSKQGS_					0	0	0		ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28	ENST00000601150.5_1_19:59059168-59060232:+|nuORF	ENST00000601150.5_1_19:59059168-59060232:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.7374572753906	2	435.737617	869.460681	0.41827	0.00018226	-0.58225	-0.00025371	-0.16397	-7.1449E-05	435.7372903640447	37.357	0.54387	37.357	37.156	37.7	0					50	19	4	0	0	0	0.13341	1	6489	6489		26.268	7.0112	1	273740			15238	2490	9978	10091	20772	20772					0.02072925346340071
PGPPGEHL	8	Unmodified	_PGPPGEHL_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.877685546875	2	402.205953	802.397353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.362	1	30.362	29.862	30.862	0								0	0	0	0.38822	1	4405	4405		0.79363	0	1				15239	2575	9979	10092	20773	20773					-0.011750153708931066
PGPRWRRRQ	9	Unmodified	_PGPRWRRRQ_					0	0	0		ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8497924804688	2	604.847222	1207.67989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.46	1	105.46	104.96	105.96	0								0	0	0	0.28631	1	27170	27170		1.8442	0	1				15240	5815	9980	10093	20774	20774					0.08435794148226705
PGPRWRRRQ	9	Unmodified	_PGPRWRRRQ_					0	0	0		ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.849365234375	2	604.847222	1207.67989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.3	1	105.33	104.83	105.83	0.034004								0	0	0	0.28631	1	26945	26945		1.8442	0	1				15241	5815	9980	10093	20775	20775					0.08435794148226705
PGQLTKTK	8	Unmodified	_PGQLTKTK_					0	0	0			REV__ENST00000466154.5_1_16:3652081-3658965:-|nuORF	REV__ENST00000466154.5_1_16:3652081-3658965:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.22442626953125	2	436.763635	871.512717	0.015227	6.6505E-06	0.42406	0.00018521	0.43929	0.00019187	436.7637509237009	35.486	0.30451	35.565	35.407	35.711	0.078831					16	10	2	0	0	0	0.3576	1	5789	5789		0.79363	0	1	23693	+		15242	10779	9981	10094	20776	20776					0.07182088760100669
PGRFCACKIH	10	Unmodified	_PGRFCACKIH_					0	0	0		ENST00000601797.1_1_19:7701639-7701840:-|nuORF	ENST00000601797.1_1_19:7701639-7701840:-|nuORF	ENST00000601797.1_1_19:7701639-7701840:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2811889648438	2	566.281146	1130.54774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.694	1	31.767	31.267	32.267	0.073782								0	0	0	0.33892	1	4677	4677		1.4819	0.79152	1				15243	7297	9982	10095	20777	20777					-0.01231314975279929
PGRWVQVSHVF	11	Unmodified	_PGRWVQVSHVF_					0	0	0		ENSG00000188505|ENST00000339852|NCCRP1	ENSG00000188505|ENST00000339852|NCCRP1	ENSG00000188505|ENST00000339852|NCCRP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.9028015136719	3	437.903406	1310.68839	0.051165	2.2406E-05	-0.46522	-0.00020372	-0.41406	-0.00018132	437.9031864290948	45.776	0.96762	45.776	45.416	46.384	0					47	33	2	0	0	0	0.41254	1	9025	9025		1.4551	0.12547	1	81656			15244	5158	9983	10096	20778	20778					0.04547303274148362
PGSCAFPF	8	Unmodified	_PGSCAFPF_					0	0	0		ENST00000373883.3_1_2:220408769-220409425:+|nuORF;ENST00000421791.1_3_2:220408769-220409493:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	413.1836242675781	2	413.183632	824.352711	0.67914	0.00028061	-1.3387	-0.00055311	-0.65952	-0.0002725	413.1833874585545	91.976	0.72727	91.976	91.678	92.405	0					65	26	4	0	0	0	0.53771	1	23114	23114		2.8892	0	1	879980			15245	6229	9984	10097	20779	20779					-0.06649162508597328
PGSCAFPF	8	Unmodified	_PGSCAFPF_					0	0	0		ENST00000373883.3_1_2:220408769-220409425:+|nuORF;ENST00000421791.1_3_2:220408769-220409493:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.1836242675781	2	413.183632	824.352711	0.19026	7.8611E-05	0.12684	5.2407E-05	0.31709	0.00013102	413.1836705473446	91.86	0.69508	91.897	91.645	92.34	0.03653					60	24	3	0	0	0	0.53771	1	22955	22955		2.8892	0	1	671400			15246	6229	9984	10097	20780	20780					-0.06649162508597328
PGTTDPAVIL	10	Unmodified	_PGTTDPAVIL_					0	0	0		ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2745666503906	2	492.274032	982.533512	0.20543	0.00010113	-0.064952	-3.1974E-05	0.14048	6.9156E-05	492.27394448289385	69.205	0.45212	69.267	68.968	69.42	0.062126					26	16	2	0	0	0	0.41688	1	15995	15995		10.074	0	1	258380			15247	3282	9985	10098	20781	20781					0.041546343490949766
PGTTDPAVIL	10	Unmodified	_PGTTDPAVIL_					0	0	0		ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.274032	982.533512	0.20543	0.00010113	-0.064952	-3.1974E-05	0.14048	6.9156E-05	492.27394448289385	69.205	0.45212	69.267	68.968	69.42	0.062126	0.045086	8.3837E-05	NaN	10.074	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258380			15248	3282	9985	10098							0.041546343490949766
PGVFPPGGVM	10	Unmodified	_PGVFPPGGVM_					0	0	0			REV__nc|ENSG00000126254|Q9BTD8-4|RBM42	REV__nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.76141357421875	2	479.246763	956.478974	0.10225	4.9005E-05	0.5992	0.00028716	0.70145	0.00033617	479.24692786950527	88.537	0.37186	88.567	88.329	88.701	0.030037					22	15	2	0	0	0	0.31771	1	21909	21909		4.3292	1.7518	1	59953	+		15249	8985	9986	10099	20782	20782					-0.0010065600330335656
PGVFPPGGVM	10	Unmodified	_PGVFPPGGVM_					0	0	0			REV__nc|ENSG00000126254|Q9BTD8-4|RBM42	REV__nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	479.246763	956.478974	0.14329	6.8673E-05	0.47928	0.00022969	0.62257	0.00029837	479.2467407919152	88.583	0.2893	88.583	88.374	88.663	0	0.0080289	-8.6204E-05	NaN	4.3292	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66227	+		15250	8985	9986	10099							-0.0010065600330335656
PGWLSGPYLQ	10	Unmodified	_PGWLSGPYLQ_					0	0	0			REV__ENST00000461241.1_1_22:31518992-31523076:+|nuORF	REV__ENST00000461241.1_1_22:31518992-31523076:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2901611328125	2	559.287474	1116.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.85	1	103.85	103.35	104.35	0								0	0	0	0.33877	1	26704	26704		1.6526	0.17072	1		+		15251	11961	9987	10100	20783	20783					0.0067774296028346726
PHADHSAAVP	10	Unmodified	_PHADHSAAVP_					0	0	0		nc|ENSG00000158158|Q6P4Q7-2|CNNM4	nc|ENSG00000158158|Q6P4Q7-2|CNNM4	nc|ENSG00000158158|Q6P4Q7-2|CNNM4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.72943115234375	2	501.243598	1000.47264	-0.29157	-0.00014615	-0.1345	-6.7416E-05	-0.42607	-0.00021356	501.24343304605753	21.302	0.72336	21.302	21.101	21.825	0					157	73	3	0	0	0	0.31712	1	1808	1808		6.7232	0.51738	1	83653			15252	7540	9988	10101	20784	20784					-0.027574579104793884
PHCANTEIIVK	11	Unmodified	_PHCANTEIIVK_					0	0	0		ENSG00000169429|ENST00000307407|CXCL8	ENSG00000169429|ENST00000307407|CXCL8	ENSG00000169429|ENST00000307407|CXCL8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.8226318359375	2	612.823898	1223.63324	0.16709	0.00010239	-3.0824	-0.001889	-2.9153	-0.0017866	612.8220938754463	57.764	0.24815	57.833	57.752	58	0.068375					17	9	2	0	0	0	0.36864	1	12553	12553		10.151	0.76745	1	143280			15253	4339	9989	10102	20785	20785					0.030371286913805307
PHCEDFSWF	9	Unmodified	_PHCEDFSWF_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2322387695312	2	584.231842	1166.44913	0.76557	0.00044727	0.02088	1.2199E-05	0.78645	0.00045947	584.2317192827953	98.171	0.65388	98.171	97.929	98.583	0					121	35	5	0	0	0	0.33704	1	25032	25032		1.8442	0.19162	1	793650	+		15254	8838	9990	10103	20786	20786					-0.12743639739301216
PHDIATTLQH	10	Unmodified	_PHDIATTLQH_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7931518554688	2	566.790912	1131.56727	-0.061526	-3.4872E-05	3.0494	0.0017284	2.9879	0.0016935	566.7922909312598	33.26	0.75069	33.335	32.914	33.665	0.074322					59	29	3	0	0	0	0.45945	1	5218	5218		2.9952	0.93549	1	70884			15255	3632	9991	10104	20787	20787					0.006750558408384677
PHDKKEDLL	9	Unmodified	_PHDKKEDLL_					0	0	0		ENSG00000131931|ENST00000254250|THAP1	ENSG00000131931|ENST00000254250|THAP1	ENSG00000131931|ENST00000254250|THAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.777587890625	2	547.795663	1093.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.77	1	31.844	31.344	32.344	0.073782								0	0	0	0.2722	1	4700	4700		4.756	0.42677	1				15256	2551	9992	10105	20788	20788					0.03372824126381602
PHDTPPPVSSM	11	Unmodified	_PHDTPPPVSSM_					0	0	0		MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7737426757812	2	582.771331	1163.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.292	1	61.292	60.792	61.792	0								0	0	0	0.28642	1	13750	13750		16.149	0	1				15257	7428	9993	10106	20789	20789					-0.04711412505048429
PHDTPPPVSSM	11	Unmodified	_PHDTPPPVSSM_					0	0	0		MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7698364257812	2	582.771331	1163.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.289	1	52.357	51.857	52.857	0.067173								0	0	0	0.29341	1	10874	10874		15.248	0.8431	1				15258	7428	9993	10106	20790	20790					-0.04711412505048429
PHDTPPPVSSM	11	Unmodified	_PHDTPPPVSSM_					0	0	0		MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7698364257812	2	582.771331	1163.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.724	1	52.791	52.291	53.291	0.067173								0	0	0	0.31149	1	11005	11005		10.8	0.64894	1				15259	7428	9993	10106	20791	20791					-0.04711412505048429
PHDTPPPVSSM	11	Unmodified	_PHDTPPPVSSM_					0	0	0		MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.76953125	2	582.771331	1163.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.868	1	52.933	52.433	53.433	0.06543								0	0	0	0.29341	1	11049	11049		15.248	0.8431	1				15260	7428	9993	10106	20792	20792					-0.04711412505048429
PHEAESLAL	9	Unmodified	_PHEAESLAL_					0	0	0		ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	ENSG00000169660|ENST00000327949|HEXD	ENSG00000169660|ENST00000327949|HEXD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7479553222656	2	483.748182	965.481811	-0.082955	-4.0129E-05	0.12226	5.9142E-05	0.039303	1.9013E-05	483.74816355499024	49.175	0.93088	49.175	48.945	49.876	0					74	32	4	0	0	0	0.25979	1	10138	10138		11.64	0	1	802840			15261	4348	9994	10107	20793	20793					-0.002311093448156498
PHEISNVF	8	Unmodified	_PHEISNVF_					0	0	0		tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.73779296875	2	471.737617	941.460681	0.085319	4.0248E-05	0.11727	5.532E-05	0.20259	9.5568E-05	471.7375691960772	46.875	0.97956	46.875	46.66	47.64	0					86	37	4	0	0	0	0.46036	2	9386	9386;9431		18.135	0	1	363080			15262	13574	9995	10108	20794;20795	20794					-0.012390746536766528
PHEISNVF	8	Unmodified	_PHEISNVF_					0	0	0		tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	471.737617	941.460681	-0.020163	-9.5114E-06	0.27096	0.00012782	0.2508	0.00011831	471.73755534153037	46.774	0.78156	46.857	46.65	47.431	0.083096	-0.0090728	8.4748E-05	NaN	18.135	67	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295400			15263	13574	9995	10108							-0.012390746536766528
PHFGVMWH	8	Unmodified	_PHFGVMWH_					0	0	0			REV__ENST00000366475.1_1_1:248524896-248525130:+|nuORF	REV__ENST00000366475.1_1_1:248524896-248525130:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.2300109863281	2	505.736897	1009.45924	-0.25888	-0.00013093	0.6267	0.00031694	0.36781	0.00018602	505.7384514041364	44.509	0.30633	44.509	44.359	44.665	0					12	10	2	0	0	0	0.3576	1	8621	8621		2.8892	0	1	47771	+		15264	11546	9996	10109	20796	20796					-0.045109872234206705
PHFSTWLL	8	Unmodified	_PHFSTWLL_					0	0	0		ENST00000586523.1_1_18:43667332-43667440:-|nuORF	ENST00000586523.1_1_18:43667332-43667440:-|nuORF	ENST00000586523.1_1_18:43667332-43667440:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7181396484375	2	500.766178	999.517802	-0.093991	-4.7068E-05	-1.3546	-0.00067836	-1.4486	-0.00072543	500.7659046346432	43.51	0.20558	43.51	43.39	43.595	0					11	7	2	0	0	0	0.3576	1	8359	8359		2.3027	0.24298	1	30885			15265	7241	9997	10110	20797	20797					0.018023926227101583
PHFYKELYKE	10	Unmodified	_PHFYKELYKE_					0	0	0		TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant;nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7	TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.8998718261719	3	451.899439	1352.67649	0.53104	0.00023998	-0.30353	-0.00013717	0.22751	0.00010281	451.89918706367735	47.528	0.755	47.528	47.263	48.018	0					36	25	2	0	0	0	0.31853	1	9528	9528		0.62683	0.12087	1	89352			15266	5202	9998	10111	20798	20798					0.014256417403203159
PHGIRCNMIL	10	Unmodified	_PHGIRCNMIL_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.78662109375	2	577.302078	1152.5896	0.36759	0.00021221	2.2272	0.0012858	2.5948	0.001498	577.303349535531	62.049	0.50053	62.049	61.921	62.421	0					41	19	3	0	0	0	0.43672	1	14053	14053		7.2892	0.56607	1	239300	+		15267	8257	9999	10112	20799	20799					0.01941240713267689
PHGLSCLL	8	Unmodified	_PHGLSCLL_					0	0	0			REV__ENST00000538079.1_1_12:6881724-6881973:+|nuORF	REV__ENST00000538079.1_1_12:6881724-6881973:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.2344970703125	2	420.225831	838.437109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.89	1	39.978	39.478	40.478	0.088562								0	0	0	0.38822	1	7134	7134		6.3541	0	1		+		15268	12392	10000	10113	20800	20800					0.011427883081637447
PHHLLPDGTL	10	Unmodified	_PHHLLPDGTL_					0	0	0		ENST00000533337.1_1_11:124766750-124767703:-|nuORF;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4	ENST00000533337.1_1_11:124766750-124767703:-|nuORF	ENST00000533337.1_1_11:124766750-124767703:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2835693359375	2	550.298373	1098.58219	0.40682	0.00022387	0.40775	0.00022439	0.81457	0.00044826	550.2986019124894	37.281	0.96847	37.366	37.102	38.071	0.084476					61	33	3	0	0	0	0.45443	1	6393	6393		3.9444	1.6417	1	100550			15269	3547	10001	10114	20801	20801					0.03684547708849095
PHHVDLEIST	10	Unmodified	_PHHVDLEIST_					0	0	0			REV__ENSG00000183853|ENST00000359209|KIRREL1	REV__ENSG00000183853|ENST00000359209|KIRREL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2911376953125	2	574.290745	1146.56694	0.1274	7.3162E-05	0.0054593	3.1352E-06	0.13286	7.6298E-05	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.41688	1	7274	7274		10.074	2.9722	1	8357100	+		15270	10614	10002	10115	20802	20802					-0.00048363879000135057
PHIEERSVQ	9	Unmodified	_PHIEERSVQ_					0	0	0			REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7825927734375	2	547.783087	1093.55162	-0.11301	-6.1908E-05	-0.044463	-2.4356E-05	-0.15748	-8.6263E-05	547.7830960565732	27.326	0.33201	27.326	27.139	27.471	0					39	20	3	0	0	0	0.32375	1	3494	3494		3.5965	0	1	48988	+		15271	9585	10003	10116	20803	20803					0.008587693238041538
PHIETIFLF	9	Unmodified	_PHIETIFLF_					0	0	0			REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8071899414062	2	558.808042	1115.60153	0.58046	0.00032437	-2.8242	-0.0015782	-2.2438	-0.0012538	558.8064474887981	102.8	0.26531	102.85	102.75	103.02	0.040916					37	20	2	0	0	0	0.26684	1	26259	26259		10.824	2.6684	1	87066	+		15272	13318	10004	10117	20804	20804					0.04835503999743196
PHIETIFLF	9	Unmodified	_PHIETIFLF_					0	0	0			REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	558.808042	1115.60153	0.34369	0.00019206	-2.0364	-0.001138	-1.6927	-0.0009459	558.8069128915729	102.9	0.32643	102.9	102.77	103.1	0	0.028854	0.00021629	NaN	10.824	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70637	+		15273	13318	10004	10117							0.04835503999743196
PHIETIFLF	9	Unmodified	_PHIETIFLF_					0	0	0			REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	558.808042	1115.60153	0.58046	0.00032437	-2.8242	-0.0015782	-2.2438	-0.0012538	558.8064474887981	102.8	0.26531	102.85	102.75	103.02	0.040916	-0.028854	-0.00066418	NaN	10.824	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87066	+		15274	13318	10004	10117							0.04835503999743196
PHIFFDDQ	8	Unmodified	_PHIFFDDQ_					0	0	0		ENSG00000116981|ENST00000235628|NT5C1A	ENSG00000116981|ENST00000235628|NT5C1A	ENSG00000116981|ENST00000235628|NT5C1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7744445800781	2	509.735074	1017.4556	0.023943	1.2205E-05	-0.42498	-0.00021663	-0.40103	-0.00020442	510.23616522933366	34	0.13135	34.076	34.018	34.15	0.076244					6	4	2	0	0	0	0.3576	1	5351	5351		2.8892	2.0956	1	9455.5			15275	1980	10005	10118	20805	20805					-0.05243378516286157
PHIGRDYLS	9	Unmodified	_PHIGRDYLS_					0	0	0			REV__ENST00000552249.1_1_12:57872476-57873529:-|nuORF	REV__ENST00000552249.1_1_12:57872476-57873529:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2760620117188	2	529.274898	1056.53524	-0.11161	-5.9074E-05	0.43973	0.00023274	0.32811	0.00017366	529.2751835952694	31.537	0.53507	31.537	31.236	31.772	0					38	23	2	0	0	0	0.32112	1	4709	4709		3.9444	0	1	34120	+		15276	11706	10006	10119	20806	20806					0.009236881576953238
PHKIVVWE	8	Unmodified	_PHKIVVWE_					0	0	0			REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.29840087890625	2	504.287277	1006.56	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.953	1	38.953	38.453	39.453	0								0	0	0	0.38822	1	6977	6977		2.3027	0	1		+		15277	9874	10007	10120	20807	20807					0.056983680310850104
PHKTQELRL	9	Unmodified	_PHKTQELRL_					0	0	0			REV__ENST00000591247.5_1_17:42113389-42113530:-|nuORF	REV__ENST00000591247.5_1_17:42113389-42113530:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7658081054688	2	561.324922	1120.63529	0.10911	6.1248E-05	-0.97436	-0.00054693	-0.86525	-0.00048569	561.3242010937837	34.852	0.47177	34.852	34.676	35.148	0					29	17	2	0	0	0	0.24635	1	5710	5710		10.824	2.9138	1	64632	+		15278	12580	10008	10121	20808	20808					0.07979925491486028
PHKWTLQIE	9	Unmodified	_PHKWTLQIE_					0	0	0			REV__ENSG00000066056|ENST00000372476|TIE1	REV__ENSG00000066056|ENST00000372476|TIE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2374267578125	2	576.314023	1150.61349	0.060104	3.4639E-05	3.3686	0.0019413	3.4287	0.001976	576.315891979812	34.065	0.23756	34.141	34.04	34.277	0.076244					11	8	2	0	0	0	0.25875	1	5388	5388		1.8442	1.1539	1	16312	+		15279	8108	10009	10122	20809	20809					0.044211207429498245
PHLAFPPM	8	Unmodified	_PHLAFPPM_					0	0	0		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.2369384765625	2	455.236199	908.457844	0.5763	0.00026235	0.84754	0.00038583	1.4238	0.00064818	455.2366784162849	99.763	0.8549	99.763	99.433	100.29	0					111	45	4	0	0	0	0.53771	1	25541	25541		2.8892	0	1	5490600			15280	7447	10010	10123	20810	20810					-4.6213121777327615E-05
PHLAFPPM	8	Unmodified	_PHLAFPPM_					0	0	0		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	455.236199	908.457844	0.40823	0.00018584	1.6181	0.00073661	2.0263	0.00092245	455.2367820937212	99.719	0.89742	99.762	99.479	100.38	0.042831	-0.00026541	0.00023827	NaN	2.8892	129	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4838600			15281	7447	10010	10123							-4.6213121777327615E-05
PHLLLRLGL	9	Unmodified	_PHLLLRLGL_					0	0	0		ENST00000609924.1_1_18:3246993-3247071:-|nuORF	ENST00000609924.1_1_18:3246993-3247071:-|nuORF	ENST00000609924.1_1_18:3246993-3247071:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3380737304688	2	516.339844	1030.66514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.79	1	106.79	106.29	107.29	0								0	0	0	0.28409	1	27545	27545		2.3027	0	1				15282	7329	10011	10124	20811	20811					0.1510290922749391
PHLLPLPSFS	10	Unmodified	_PHLLPLPSFS_					0	0	0			REV__ENST00000533223.1_1_11:117257895-117280842:+|nuORF	REV__ENST00000533223.1_1_11:117257895-117280842:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7553100585938	2	554.313492	1106.61243	0.11106	6.1564E-05	-4.2353	-0.0023477	-4.1242	-0.0022861	554.3108818446387	27.139	0.11871	27.225	27.138	27.257	0.0867					10	7	2	0	0	0	0.31834	1	3341	3341		1.6526	0.85899	1	9376.7	+		15283	12366	10012	10125	20812	20812					0.0633890637402601
PHLLPLPSFS	10	Unmodified	_PHLLPLPSFS_					0	0	0			REV__ENST00000533223.1_1_11:117257895-117280842:+|nuORF	REV__ENST00000533223.1_1_11:117257895-117280842:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	554.313492	1106.61243	-0.018647	-1.0336E-05	-3.7105	-0.0020568	-3.7291	-0.0020671	554.3113108988603	27.262	0.17682	27.262	27.12	27.297	0	0.018512	5.9022E-05	NaN	1.6526	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11002	+		15284	12366	10012	10125							0.0633890637402601
PHLLYRPLE	9	Unmodified	_PHLLYRPLE_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000467077.1_1_3:142074330-142089377:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7744750976562	2	569.324391	1136.63423	0.35904	0.00020441	0.078737	4.4827E-05	0.43778	0.00024924	569.3244779726648	47.549	0.36324	47.549	47.372	47.735	0					17	11	2	0	0	0	0.25579	1	9553	9553		4.3292	0	1	41145			15285	1829	10013	10126	20813	20813					0.07137711122618384
PHLRFPVF	8	Unmodified	_PHLRFPVF_					0	0	0		ENST00000409690.3_1_3:196438896-196439121:-|nuORF	ENST00000409690.3_1_3:196438896-196439121:-|nuORF	ENST00000409690.3_1_3:196438896-196439121:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7908630371094	2	506.789987	1011.56542	0.4455	0.00022577	3.7284	0.0018895	4.1739	0.0021153	507.29374264289385	100.05	0.63575	100.1	99.913	100.55	0.042831					92	34	4	0	0	0	0.53771	2	25385	25385;25427		2.8892	0.31174	1	163410			15286	6398	10014	10127	20814;20815	20814					0.06010091613563873
PHPILFFV	8	Unmodified	_PHPILFFV_					0	0	0			REV__ENST00000577684.1_1_17:18314705-18315443:+|nuORF	REV__ENST00000577684.1_1_17:18314705-18315443:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.60009765625	2	485.281463	968.548374	0.069824	3.3884E-05	-3.162	-0.0015345	-3.0922	-0.0015006	485.27992919584767	38.689	0.23285	38.776	38.652	38.885	0.08688					11	8	2	0	0	0	0.3576	1	6760	6760		2.8892	0.31174	1	16060	+		15287	12540	10015	10128	20816	20816					0.06284171007757777
PHPRHQTTE	9	Unmodified	_PHPRHQTTE_					0	0	0		chr1:143382868-144245238|213|21.6|0.0|21.04|-|0|TE_info:MLT1H1,MLT1H1_dup139,ERVL-MaLR,LTR,acceptor,-,143382506,143382868|None,LINC02802|3	chr1:143382868-144245238|213|21.6|0.0|21.04|-|0|TE_info:MLT1H1,MLT1H1_dup139,ERVL-MaLR,LTR,acceptor,-,143382506,143382868|None,LINC02802|3	chr1:143382868-144245238|213|21.6|0.0|21.04|-|0|TE_info:MLT1H1,MLT1H1_dup139,ERVL-MaLR,LTR,acceptor,-,143382506,143382868|None,LINC02802|3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7549438476562	2	551.773054	1101.53155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.659	1	36.74	36.24	37.24	0.081715								0	0	0	0.27427	1	6163	6163		4.3292	0.73274	1				15288	136	10016	10129	20817	20817					-0.015149816161510898
PHQKNLNP	8	Unmodified	_PHQKNLNP_					0	0	0		ENST00000238961.8_1_10:102676368-102676479:+|nuORF	ENST00000238961.8_1_10:102676368-102676479:+|nuORF	ENST00000238961.8_1_10:102676368-102676479:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.23040771484375	2	474.256508	946.498464	0.35566	0.00016867	-1.1608	-0.00055051	-0.80513	-0.00038184	474.255934601811	54.499	0.68436	54.499	54.267	54.951	0					43	30	2	0	0	0	0.53817	1	11638	11638		2.5775	0.27475	1	295170			15289	5823	10017	10130	20818	20818					0.02307436331795998
PHRQLPGHHG	10	Unmodified	_PHRQLPGHHG_					0	0	0			REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF	REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.297119140625	2	568.29703	1134.57951	-0.09363	-5.321E-05	-0.68271	-0.00038798	-0.77634	-0.00044119	568.2966881836832	33.544	0.57934	33.544	33.303	33.883	0					26	20	2	0	0	0	0.45627	1	5353	5353		3.5965	0.31518	1	25670	+		15290	12480	10018	10131	20819	20819					0.01760137094561287
PHSDPYWAI	9	Unmodified	_PHSDPYWAI_					0	0	0		ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.255615234375	2	543.256174	1084.49779	-0.32676	-0.00017751	-0.55569	-0.00030188	-0.88245	-0.0004794	543.2558855033361	18.332	0.85762	18.332	18.233	19.091	0					143	99	3	0	0	0	0.34646	1	1249	1249		0.6015	0	1	55214			15291	2952	10019	10132	20820	20820					-0.041074031079233464
PHSHWLLLS	9	Unmodified	_PHSHWLLLS_					0	0	0			REV__ENST00000489944.1_1_1:151106967-151107344:-|nuORF	REV__ENST00000489944.1_1_1:151106967-151107344:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8038940429688	2	545.295633	1088.57671	0.58041	0.00031649	-3.9753	-0.0021677	-3.3949	-0.0018512	545.7948114859505	97.507	0.24426	97.507	97.461	97.705	0					24	10	3	0	0	0	0.23216	1	24795	24795		14.838	0.25658	1	58438	+		15292	12142	10020	10133	20821	20821					0.03596868917043139
PHSIAWLAEP	10	Unmodified	_PHSIAWLAEP_					0	0	0			REV__ENST00000468564.6_1_22:44582182-44582449:+|nuORF	REV__ENST00000468564.6_1_22:44582182-44582449:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8272094726562	2	560.792924	1119.57129	0.47879	0.0002685	2.742	0.0015377	3.2208	0.0018062	560.7944065054894	52.997	0.093258	53.063	53.013	53.107	0.06543					5	3	2	0	0	0	0.31794	1	11098	11098		3.5965	0	1	24755	+		15293	12017	10021	10134	20822	20822					0.01629145334572968
PHSLRYNLT	9	Unmodified	_PHSLRYNLT_					0	0	0		MICA|p.G93Pfs*27|1|0.2|ENSG00000204520|chr6:31410748-31410749|-/CCTGACT|frameshift_variant;nc|ENSG00000204520|Q29983-2|MICA;ENSG00000204520|ENST00000449934|MICA;nc|ENSG00000204520|Q29983|MICA	MICA|p.G93Pfs*27|1|0.2|ENSG00000204520|chr6:31410748-31410749|-/CCTGACT|frameshift_variant	MICA|p.G93Pfs*27|1|0.2|ENSG00000204520|chr6:31410748-31410749|-/CCTGACT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2841186523438	2	550.795998	1099.57744	0.40288	0.0002219	-0.060886	-3.3536E-05	0.34199	0.00018837	550.7958988497368	38.001	1.7042	38.001	37.675	39.379	0					140	58	4	0	0	0	0.32112	1	6997	6997		3.9444	0	1	739240			15294	5475	10022	10135	20823	20823					0.031636635660561296
PHSPPPRHES	10	Unmodified	_PHSPPPRHES_					0	0	0			REV__ENST00000275525.7_1_7:45928064-45928574:+|nuORF	REV__ENST00000275525.7_1_7:45928064-45928574:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7947387695312	2	570.780879	1139.5472	0.11857	6.768E-05	-0.42492	-0.00024254	-0.30635	-0.00017486	570.7805889399638	35.348	0.45885	35.427	35.302	35.761	0.078827					34	17	3	0	0	0	0.46746	1	5833	5833		1.4819	0	1	67032	+		15295	11284	10023	10136	20824	20824					-0.01698695099116776
PHSPPQAEALT	11	Unmodified	_PHSPPQAEALT_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2913818359375	2	574.290745	1146.56694	0.1274	7.3162E-05	0.0054593	3.1352E-06	0.13286	7.6298E-05	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.33157	3	6888	6888;7031;7202		14.405	3.5202	1	8357100	+		15296	8518	10024	10137	20825;20826;20827	20825					-0.00048363879000135057
PHSPPQAEALT	11	Unmodified	_PHSPPQAEALT_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.288818359375	2	574.290745	1146.56694	-0.51233	-0.00029422	-0.27868	-0.00016004	-0.79101	-0.00045427	574.2907400473684	41.9	1.6847	41.9	41.52	43.205	0					73	59	2	0	0	0	0.40055	1	7802	7802		4.1895	0.59301	1	51705	+		15297	8518	10024	10137	20828	20828					-0.00048363879000135057
PHTQIQVYP	9	Unmodified	_PHTQIQVYP_					0	0	0			REV__nc|ENSG00000112742|P33981-2|TTK	REV__nc|ENSG00000112742|P33981-2|TTK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7691040039062	2	541.785099	1081.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.183	1	60.183	59.683	60.683	0								0	0	0	0.21527	1	13412	13412		15.847	1.9411	1		+		15298	8722	10025	10138	20829	20829					0.01812858817538654
PHTQRMNKL	9	Unmodified	_PHTQRMNKL_					0	0	0		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7951049804688	2	562.8033	1123.59205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.157	1	39.244	38.744	39.744	0.087841								0	0	0	0.26517	1	6912	6912		6.2058	0.47393	1				15299	2605	10026	10139	20830	20830					0.035194124425970585
PHTQRMNKL	9	Unmodified	_PHTQRMNKL_					0	0	0		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7946166992188	2	562.8033	1123.59205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.233	1	39.321	38.821	39.821	0.088562								0	0	0	0.26517	1	6935	6935		6.2058	0.47393	1				15300	2605	10026	10139	20831	20831					0.035194124425970585
PHTSYRNLL	9	Unmodified	_PHTSYRNLL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2977294921875	2	550.795998	1099.57744	0.071682	3.9482E-05	0.27566	0.00015183	0.34734	0.00019131	550.7959780424997	32.222	0.45889	32.296	32.127	32.586	0.07378					32	23	2	0	0	0	0.3182	1	4855	4855		4.3292	0	1	32342			15301	2453	10027	10140	20832	20832					0.03163663566078867
PHVDEFLQR	9	Unmodified	_PHVDEFLQR_					0	0	0		ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000497677.5_1_2:219264813-219268311:+|nuORF	ENST00000497677.5_1_2:219264813-219268311:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7933959960938	2	570.793455	1139.57236	0.18103	0.00010333	0.056238	3.21E-05	0.23727	0.00013543	570.7934834373119	38.606	2.2299	38.606	38.332	40.562	0					147	81	4	0	0	0	0.30005	1	6944	6944		6.7232	0.51738	1	258260			15302	6846	10028	10141	20833	20833					0.008153597034606719
PHVDEFLQR	9	Unmodified	_PHVDEFLQR_					0	0	0		ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000497677.5_1_2:219264813-219268311:+|nuORF	ENST00000497677.5_1_2:219264813-219268311:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7941284179688	2	570.793455	1139.57236	0.057192	3.2645E-05	0.46913	0.00026777	0.52632	0.00030042	570.7937302604444	34.51	1.029	34.586	34.221	35.25	0.076244					63	43	2	0	0	0	0.30005	2	5498	5498;5594		6.7232	0.51738	1	45957			15303	6846	10028	10141	20834;20835	20834					0.008153597034606719
PHVDEFLQR	9	Unmodified	_PHVDEFLQR_					0	0	0		ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000497677.5_1_2:219264813-219268311:+|nuORF	ENST00000497677.5_1_2:219264813-219268311:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7929077148438	2	570.793455	1139.57236	0.31779	0.00018139	-0.075309	-4.2986E-05	0.24248	0.00013841	570.7933656891707	38.506	0.97142	38.593	38.297	39.268	0.086884					96	36	4	0	0	0	0.32375	2	6797	6797;6828		3.5965	0	1	249090			15304	6846	10028	10141	20836;20837	20836					0.008153597034606719
PHVEASTEES	10	Unmodified	_PHVEASTEES_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2554931640625	2	543.240918	1084.46728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.634	1	26.72	26.22	27.22	0.0867								0	0	0	0.33711	1	3187	3187		3.5965	1.019	1		+		15305	9348	10029	10142	20838	20838					-0.07157226283607088
PHVQIPFEI	9	Unmodified	_PHVQIPFEI_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2845458984375	2	540.297842	1078.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.982	1	54.982	54.482	55.482	0								0	0	0	0.24643	1	11832	11832		10.074	0.6908	1				15306	1915	10030	10143	20839	20839					0.04498333339961391
PHWAEEFFVS	10	Unmodified	_PHWAEEFFVS_					0	0	0		ENST00000555746.5_3_14:35452094-35465902:+|nuORF	ENST00000555746.5_3_14:35452094-35465902:+|nuORF	ENST00000555746.5_3_14:35452094-35465902:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.7874755859375	2	624.787838	1247.56112	-0.3732	-0.00023317	0.00022083	1.3797E-07	-0.37298	-0.00023303	624.7877256117885	30.434	1.0891	30.434	30.169	31.258	0					123	56	4	0	0	0	0.47288	1	4642	4642		0.45834	0	1	118690			15307	7126	10031	10144	20840	20840					-0.05275462390682151
PHWAEEFFVS	10	Unmodified	_PHWAEEFFVS_					0	0	0		ENST00000555746.5_3_14:35452094-35465902:+|nuORF	ENST00000555746.5_3_14:35452094-35465902:+|nuORF	ENST00000555746.5_3_14:35452094-35465902:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.786865234375	2	624.787838	1247.56112	-0.36169	-0.00022598	-0.15898	-9.9328E-05	-0.52066	-0.0003253	624.7878013912713	31.765	1.1609	31.765	31.365	32.526	0					95	48	3	0	0	0	0.45443	1	4967	4967		3.9444	0	1	65671			15308	7126	10031	10144	20841	20841					-0.05275462390682151
PHYEVAESDF	10	Unmodified	_PHYEVAESDF_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2583618164062	2	597.259111	1192.50367	-0.025974	-1.5513E-05	0.18124	0.00010825	0.15526	9.2733E-05	597.2589178842233	73.324	0.60618	73.324	73.084	73.69	0					27	21	2	0	0	0	0.44246	1	17460	17460		6.2058	1.8765	1	437750			15309	2895	10032	10145	20842	20842					-0.08488349386902883
PIADRMKIAIK	11	Unmodified	_PIADRMKIAIK_					0	0	0			REV__ENSG00000102890|ENST00000393997|ELMO3	REV__ENSG00000102890|ENST00000393997|ELMO3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.3827514648438	2	628.381383	1254.74821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.116	1	90.116	89.616	90.616	0								0	0	0	0.32927	1	22538	22538		4.5289	2.0304	1		+		15310	8460	10033	10146	20843	20843					0.13102857893181863
PIALLTIMF	9	Unmodified	_PIALLTIMF_					0	0	0		HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant;ENSG00000135914|ENST00000258400|HTR2B	HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant	HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.80377197265625	2	509.803914	1017.59328	0.32258	0.00016445	-0.26517	-0.00013518	0.05741	2.9268E-05	509.8036639285341	78.736	1.8984	78.736	78.153	80.051	0					143	65	3	0	0	0	0.31496	1	19084	19084		4.756	0.42677	1	544660			15311	2755	10034	10147	20844	20844					0.08518233758786664
PIALLTIMF	9	Unmodified	_PIALLTIMF_					0	0	0		HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant;ENSG00000135914|ENST00000258400|HTR2B	HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant	HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.803955078125	2	509.803914	1017.59328	0.53124	0.00027083	-0.2345	-0.00011955	0.29675	0.00015128	509.8037313893562	80.9	2.9942	80.923	80.075	83.069	0.023605					311	107	4	0	0	0	0.31496	2	19899	19899;19950		4.756	0.81161	1	2164500			15312	2755	10034	10147	20845;20846	20845					0.08518233758786664
PIAYDGEVL	9	Unmodified	_PIAYDGEVL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7532043457031	2	488.752933	975.491313	0.38096	0.00018619	-0.020063	-9.806E-06	0.36089	0.00017639	488.75285150582323	70.772	0.67466	70.772	70.506	71.181	0					50	23	3	0	0	0	0.26684	3	16612	16612;16655;16711		10.824	3.5347	1	299830			15313	356	10035	10148	20847;20848;20849	20847					0.002586589407201245
PIAYDGEVL	9	Unmodified	_PIAYDGEVL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7527160644531	2	488.752933	975.491313	0.4901	0.00023954	0.022831	1.1159E-05	0.51294	0.0002507	488.75283711818014	70.658	0.75563	70.719	70.507	71.262	0.060562					48	29	3	0	0	0	0.26684	2	16418	16418;16464		10.824	3.5347	1	423470			15314	356	10035	10148	20850;20851	20850					0.002586589407201245
PIDKEEVSL	9	Unmodified	_PIDKEEVSL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2767333984375	2	515.276772	1028.53899	-0.1852	-9.5431E-05	-0.6397	-0.00032962	-0.8249	-0.00042505	515.2763323262718	42.996	0.52643	42.996	42.736	43.263	0					28	17	2	0	0	0	0.25875	1	8227	8227		1.8442	0	1	79175			15315	1580	10036	10149	20852	20852					0.02586313140909624
PIDKEEVSL	9	Unmodified	_PIDKEEVSL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	515.276772	1028.53899	-0.087414	-4.5043E-05	-0.0049554	-2.5534E-06	-0.09237	-4.7596E-05	515.2766215277555	42.896	0.35056	42.986	42.812	43.162	0.089767	-0.0049493	0.00050663	NaN	1.8442	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67500			15316	1580	10036	10149							0.02586313140909624
PIEMIYFPFF	10	Unmodified	_PIEMIYFPFF_					0	0	0		tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8822021484375	3	435.219233	1302.63587	0.60626	0.00026386	-1.4951	-0.0006507	-0.88884	-0.00038684	435.2186130999279	53.795	0.69337	53.795	53.603	54.296	0					58	24	3	0	0	0	0.31645	1	11544	11544		10.151	3.5202	1	253630			15317	13692	10037	10150	20853	20853					-0.0033441590367147
PIEMIYFPFF	10	Unmodified	_PIEMIYFPFF_					0	0	0		tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2190246582031	3	435.219233	1302.63587	0.32208	0.00014018	-0.93715	-0.00040786	-0.61506	-0.00026769	435.2188041848942	53.841	0.9981	53.906	53.5	54.498	0.06543					56	25	3	0	0	0	0.44253	1	11324	11324		6.1918	0.78914	1	271230			15318	13692	10037	10150	20854	20854					-0.0033441590367147
PIEVFYESK	9	Unmodified	_PIEVFYESK_					0	0	0			REV__FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant	REV__FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3084106445312	2	556.28714	1110.55973	0.52287	0.00029086	-0.098037	-5.4537E-05	0.42483	0.00023633	556.2870950214568	73.374	0.59857	73.426	73.338	73.937	0.052567					49	23	3	0	0	0	0.25209	1	17326	17326		12.532	0	1	235820	+		15319	8273	10038	10151	20855	20855					0.008869035205634646
PIFMYLET	8	Unmodified	_PIFMYLET_					0	0	0		ENST00000367108.7_1_1:206821114-206821159:+|nuORF	ENST00000367108.7_1_1:206821114-206821159:+|nuORF	ENST00000367108.7_1_1:206821114-206821159:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2570495605469	2	507.254254	1012.49396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.74	1	101.74	101.24	102.24	0								0	0	0	0.38822	1	26076	26076		2.5775	0	1				15320	6172	10039	10152	20856	20856					-0.011792089259870409
PIGFMRAN	8	Unmodified	_PIGFMRAN_					0	0	0			REV__ENST00000413059.1_1_X:57419493-57419883:-|nuORF	REV__ENST00000413059.1_1_X:57419493-57419883:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.7598571777344	2	453.23673	904.458907	0.48236	0.00021863	0.26334	0.00011935	0.7457	0.00033798	453.23676076411016	81.031	0.37529	81.054	80.882	81.257	0.023613					14	12	2	0	0	0	0.35713	1	19643	19643		14.582	3.4672	1	38727	+		15321	11786	10040	10153	20857	20857					0.002855930567307041
PIGQEHVQG	9	Unmodified	_PIGQEHVQG_					0	0	0		ENST00000493656.1_1_6:37427445-37429528:+|nuORF	ENST00000493656.1_1_6:37427445-37429528:+|nuORF	ENST00000493656.1_1_6:37427445-37429528:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.748291015625	2	482.745973	963.477394	-0.068138	-3.2893E-05	-0.27566	-0.00013307	-0.3438	-0.00016597	482.74605159224024	36.105	0.81394	36.187	35.82	36.634	0.081715					100	32	4	0	0	0	0.33849	1	6058	6058		1.6526	0.96225	1	215280			15322	6819	10041	10154	20858	20858					-0.005805737677064826
PIGRDSFLF	9	Unmodified	_PIGRDSFLF_					0	0	0			REV__ENSG00000121691|ENST00000241052|CAT	REV__ENSG00000121691|ENST00000241052|CAT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2827758789062	2	526.282192	1050.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.689	1	84.689	84.189	85.189	0								0	0	0	0.25992	1	20889	20889		7.2892	2.0586	1		+		15323	8903	10042	10155	20859	20859					0.026577603058285604
PIGVEGIQVL	10	Unmodified	_PIGVEGIQVL_					0	0	0		ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8054809570312	2	512.8055	1023.59645	0.19887	0.00010198	0.094005	4.8206E-05	0.29288	0.00015019	512.8054336962176	89.871	0.40142	89.871	89.646	90.048	0					37	15	3	0	0	0	0.32016	2	22431	22431;22483		20.415	0	1	366230			15324	4588	10043	10156	20860;20861	20860					0.08559200137142398
PIGVEGIQVL	10	Unmodified	_PIGVEGIQVL_					0	0	0		ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8056640625	2	512.8055	1023.59645	0.1453	7.451E-05	-0.12295	-6.3051E-05	0.022346	1.1459E-05	512.8054347760703	89.819	0.33652	89.853	89.65	89.987	0.034065					30	12	3	0	0	0	0.26541	2	22306	22259;22306		26.268	0	1	289400			15325	4588	10043	10156	20862;20863	20863					0.08559200137142398
PIHFLWLIE	9	Unmodified	_PIHFLWLIE_					0	0	0			REV__ENST00000315367.3_1_8:96167440-96167518:+|nuORF	REV__ENST00000315367.3_1_8:96167440-96167518:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7979125976562	2	584.331685	1166.64882	0.62482	0.0003651	-0.1287	-7.5205E-05	0.49612	0.0002899	584.3315043786797	82.853	0.51602	82.874	82.648	83.164	0.021744					34	17	3	0	0	0	0.2491	1	20119	20119		8.5933	1.304	1	197100	+		15326	11381	10044	10157	20864	20864					0.07215783270748943
PIHGRADH	8	Unmodified	_PIHGRADH_					0	0	0		ENST00000404169.7_1_12:121687796-121690464:-|nuORF	ENST00000404169.7_1_12:121687796-121690464:-|nuORF	ENST00000404169.7_1_12:121687796-121690464:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.24713134765625	2	451.7332	901.451848	0.089929	4.0624E-05	-1.7685	-0.0007989	-1.6786	-0.00075827	451.73234416328114	36.033	0.42357	36.115	35.966	36.39	0.081715					18	15	2	0	0	0	0.3576	1	6035	6035		2.8892	0	1	28566			15327	6373	10045	10158	20865	20865					-0.002820034994897469
PIIFATAP	8	Unmodified	_PIIFATAP_					0	0	0			REV__nc|ENSG00000185513|Q9Y468|L3MBTL1	REV__nc|ENSG00000185513|Q9Y468|L3MBTL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.2440490722656	2	415.244547	828.47454	0.32496	0.00013494	-1.4731	-0.00061169	-1.1481	-0.00047675	415.24396073631846	99.712	0.54614	99.755	99.492	100.04	0.042831					54	36	3	0	0	0	0.54081	1	25334	25334		0.79363	0	1	572120	+		15328	10673	10046	10159	20866	20866					0.053442028454128376
PIIIFLLNKK	10	Unmodified	_PIIIFLLNKK_					0	0	0			REV__ENST00000455528.5_1_21:34931602-34931680:+|nuORF	REV__ENST00000455528.5_1_21:34931602-34931680:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8816528320312	2	599.899734	1197.78492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.501	1	98.543	98.043	99.043	0.041931								0	0	0	0.33979	1	24936	24936		0.45834	0	1		+		15329	11943	10047	10160	20867	20867					0.19393477781409274
PIIKQPKLW	9	Unmodified	_PIIKQPKLW_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.854736328125	2	561.855327	1121.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.02	1	115.03	114.53	115.53	0.013092								0	0	0	0.2927	1	29248	29248		0.52476	0	1		+		15330	10928	10048	10161	20868	20868					0.14012062541746673
PIKDSMFSL	9	Unmodified	_PIKDSMFSL_					0	0	0		nc|ENSG00000143603|Q9UGI6-2|KCNN3	nc|ENSG00000143603|Q9UGI6-2|KCNN3	nc|ENSG00000143603|Q9UGI6-2|KCNN3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7894897460938	2	519.270435	1036.52632	0.20835	0.00010819	-2.3418	-0.001216	-2.1335	-0.0011078	519.2692578878455	94.982	0.51972	95.02	94.888	95.407	0.038872					31	21	2	0	0	0	0.23975	1	23857	23857		14.838	2.3067	1	102400			15331	7518	10049	10162	20869	20869					0.009515784770428581
PIKKTTMHRR	10	Unmodified	_PIKKTTMHRR_					0	0	0			REV__nc|ENSG00000172059|O14901-2|KLF11	REV__nc|ENSG00000172059|O14901-2|KLF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.875732421875	2	634.374423	1266.73429	0.2496	0.00015834	1.7335	0.0010997	1.9831	0.001258	634.3762214165522	108.18	0.19358	108.21	108.04	108.24	0.022224					30	28	2	0	0	0	0.45627	1	27691	27691		3.5965	0.60125	1	3040700	+		15332	10277	10050	10163	20870	20870					0.11159625184745892
PIKKTTMHRR	10	Unmodified	_PIKKTTMHRR_					0	0	0			REV__nc|ENSG00000172059|O14901-2|KLF11	REV__nc|ENSG00000172059|O14901-2|KLF11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.875732421875	2	634.374423	1266.73429	0.2496	0.00015834	1.7335	0.0010997	1.9831	0.001258	634.3762214165522	108.18	0.19358	108.21	108.04	108.24	0.022224					30	28	2	0	0	0	0.31794	1	27691	27691		3.5965	0.60125	1	3040700	+		15333	10277	10050	10163	20871	20871					0.11159625184745892
PILAEEAVL	9	Unmodified	_PILAEEAVL_					0	0	0		nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	nc|ENSG00000115109|Q9HCM4-3|EPB41L5	nc|ENSG00000115109|Q9HCM4-3|EPB41L5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7792663574219	2	477.778951	953.543348	-0.060958	-2.9124E-05	0.27976	0.00013366	0.2188	0.00010454	477.77899364272673	73.965	0.68021	73.965	73.69	74.37	0					61	24	3	0	0	0	0.16036	1	17565	17565		23.148	0	1	1819200			15334	1877	10051	10164	20872	20872					0.0647182235445598
PILAEEAVL	9	Unmodified	_PILAEEAVL_					0	0	0		nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	nc|ENSG00000115109|Q9HCM4-3|EPB41L5	nc|ENSG00000115109|Q9HCM4-3|EPB41L5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7791748046875	2	477.778951	953.543348	0.12451	5.9488E-05	0.085031	4.0626E-05	0.20954	0.00010011	477.7789132555586	73.916	0.75152	73.965	73.645	74.396	0.048546					68	27	3	0	0	0	0.16036	1	17386	17386		23.148	0	1	973190			15335	1877	10051	10164	20873	20873					0.0647182235445598
PILAFPFP	8	Unmodified	_PILAFPFP_					0	0	0		ENST00000484590.1_1_2:9539095-9539452:+|nuORF	ENST00000484590.1_1_2:9539095-9539452:+|nuORF	ENST00000484590.1_1_2:9539095-9539452:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.25347900390625	2	451.262739	900.510926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.323	1	33.397	32.897	33.897	0.074322								0	0	0	0.38822	1	5165	5165		0.79363	0	1				15336	6775	10052	10165	20874	20874					0.05669079742131089
PILHADKDSE	10	Unmodified	_PILHADKDSE_					0	0	0			REV__ENST00000485950.1_1_22:21153332-21156304:-|nuORF	REV__ENST00000485950.1_1_22:21153332-21156304:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3370971679688	2	562.782753	1123.55095	0.32121	0.00018077	2.953	0.0016619	3.2742	0.0018427	562.784539825905	51.627	0.41709	51.697	51.475	51.892	0.069878					21	14	2	0	0	0	0.31585	1	10665	10665		10.824	1.4765	1	67577	+		15337	11061	10053	10166	20875	20875					-0.005880701158957891
PILWRFKF	8	Unmodified	_PILWRFKF_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8302001953125	2	553.829112	1105.64367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.475	1	83.497	82.997	83.997	0.021744								0	0	0	0.38822	1	20360	20360		5.7604	0.028577	1		+		15338	9543	10054	10167	20876	20876					0.09507524198784267
PIMGQKLSF	9	Unmodified	_PIMGQKLSF_					0	0	0			REV__ENSG00000196900|ENST00000357147|TEX43	REV__ENSG00000196900|ENST00000357147|TEX43	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7837219238281	2	510.78097	1019.54739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.449	1	90.449	89.949	90.949	0								0	0	0	0.2428	1	22640	22640		10.824	0	1		+		15339	10837	10055	10168	20877	20877					0.0383958857653397
PINMENLPVNG	11	Unmodified	_PINMENLPVNG_					0	0	0		ENST00000529077.5_1_11:134236970-134242406:+|nuORF;ENSG00000149328|ENST00000535456|GLB1L2	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3014526367188	2	599.300255	1196.58596	0.40127	0.00024048	0.81994	0.00049139	1.2212	0.00073188	599.3006509142541	47.69	0.42544	47.69	47.4	47.825	0					25	13	2	0	0	0	0.41369	1	9600	9600		1.1933	0.50296	1	82882			15340	3401	10056	10169	20878	20878					-0.004471505796118436
PINMENLPVNG	11	Unmodified	_PINMENLPVNG_					0	0	0		ENST00000529077.5_1_11:134236970-134242406:+|nuORF;ENSG00000149328|ENST00000535456|GLB1L2	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	599.300255	1196.58596	0.44331	0.00026568	0.52353	0.00031375	0.96684	0.00057943	599.3003739298871	47.446	0.43976	47.529	47.376	47.816	0.083096	-0.08049	-0.00023495	NaN	1.1933	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71877			15341	3401	10056	10169							-0.004471505796118436
PIPFCGDYIGL	11	Unmodified	_PIPFCGDYIGL_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7958984375	2	597.796817	1193.57908	-0.089842	-5.3707E-05	0.20577	0.00012301	0.11592	6.9298E-05	597.7966281552892	106.77	0.72027	106.77	106.55	107.27	0					99	69	2	0	0	0	0.38057	2	27582	27542;27582		8.7454	0.54658	1	211650			15342	4184	10057	10170	20879;20880	20880					-0.009964634601828948
PIPYSSSTL	9	Unmodified	_PIPYSSSTL_					0	0	0		ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant;ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant	ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.28717041015625	2	482.752933	963.491313	-0.11592	-5.5959E-05	1.0109	0.000488	0.89496	0.00043204	482.7530819273317	72.22	0.48337	72.276	72.03	72.514	0.055939					23	16	2	0	0	0	0.29105	1	16858	16858		7.9102	1.5561	1	74141			15343	5363	10058	10171	20881	20881					0.008106589407248066
PIPYSSSTL	9	Unmodified	_PIPYSSSTL_					0	0	0		ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant;ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant	ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	482.752933	963.491313	-0.29287	-0.00014139	1.3468	0.00065017	1.0539	0.00050878	482.75341989687854	72.297	0.45686	72.297	72.071	72.528	0	0.010213	0.00013021	NaN	7.9102	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49258			15344	5363	10058	10171							0.008106589407248066
PIQGKPEEL	9	Unmodified	_PIQGKPEEL_					0	0	0			REV__ENST00000482777.5_1_12:111890539-111890719:-|nuORF	REV__ENST00000482777.5_1_12:111890539-111890719:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7813720703125	2	505.779482	1009.54441	0.1421	7.1872E-05	3.4993	0.0017699	3.6414	0.0018417	505.78110395167886	87.351	0.38105	87.379	87.199	87.58	0.027573					24	15	2	0	0	0	0.30005	1	21590	21590		6.7232	1.4925	1	98340	+		15345	12105	10059	10172	20882	20882					0.04002036723386482
PIRDYYEQ	8	Unmodified	_PIRDYYEQ_					0	0	0			REV__nc|ENSG00000068976|P11217-2|PYGM	REV__nc|ENSG00000068976|P11217-2|PYGM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.259521484375	2	542.258914	1082.50327	0.22754	0.00012339	-0.30158	-0.00016353	-0.074039	-4.0148E-05	542.2586711999694	89.785	0.35463	89.819	89.604	89.959	0.034065					23	13	2	0	0	0	0.50159	1	22315	22315		12.532	0	1	103050	+		15346	8136	10060	10173	20883	20883					-0.034677243161013394
PIRDYYEQ	8	Unmodified	_PIRDYYEQ_					0	0	0			REV__nc|ENSG00000068976|P11217-2|PYGM	REV__nc|ENSG00000068976|P11217-2|PYGM	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	542.258914	1082.50327	0.19608	0.00010633	-1.0837	-0.00058762	-0.88757	-0.00048129	542.2581871547536	89.829	0.39533	89.829	89.562	89.958	0	0.0046965	-0.00037896	NaN	12.532	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77686	+		15347	8136	10060	10173							-0.034677243161013394
PIRDYYEQ	8	Unmodified	_PIRDYYEQ_					0	0	0			REV__nc|ENSG00000068976|P11217-2|PYGM	REV__nc|ENSG00000068976|P11217-2|PYGM	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.258914	1082.50327	0.22754	0.00012339	-0.30158	-0.00016353	-0.074039	-4.0148E-05	542.2586711999694	89.785	0.35463	89.819	89.604	89.959	0.034065	-0.0046965	0.00046921	NaN	12.532	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103050	+		15348	8136	10060	10173							-0.034677243161013394
PIRTLGMRLP	10	Unmodified	_PIRTLGMRLP_					0	0	0			REV__ENST00000368073.7_1_1:160231975-160232104:-|nuORF	REV__ENST00000368073.7_1_1:160231975-160232104:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3489379882812	2	577.347343	1152.68013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.18	1	104.22	103.72	104.72	0.03791								0	0	0	0.33487	1	26628	26628		6.2058	0	1		+		15349	11571	10061	10174	20884	20884					0.10990033033203872
PISHVKDL	8	Unmodified	_PISHVKDL_					0	0	0			REV__ENST00000488605.1_1_13:50096192-50101394:+|nuORF	REV__ENST00000488605.1_1_13:50096192-50101394:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9034423828125	2	454.763635	907.512717	0.10172	4.626E-05	0.16207	7.3702E-05	0.26379	0.00011996	454.76370228719276	58.504	0.47602	58.574	58.387	58.863	0.070477					22	15	2	0	0	0	0.3576	1	12757	12757		3.9444	0	1	74857	+		15350	9238	10062	10175	20885	20885					0.055260887600866226
PITTSTVCIYA	11	Unmodified	_PITTSTVCIYA_					0	0	0			REV__OR7A5|p.D70Y|1|0.28|ENSG00000188269|chr19:14828034-14828034|C/A|missense_variant	REV__OR7A5|p.D70Y|1|0.28|ENSG00000188269|chr19:14828034-14828034|C/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7882080078125	2	584.799557	1167.58456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.8	1	14.867	14.367	15.367	0.067593								0	0	0	0.33873	1	399	399		1.1933	0	1		+		15351	12946	10063	10176	20886	20886					0.007472153316484764
PIVFKCGF	8	Unmodified	_PIVFKCGF_					0	0	0			REV__ENSG00000179151|ENST00000315127|EDC3	REV__ENSG00000179151|ENST00000315127|EDC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.8927917480469	2	455.746399	909.478245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.213	1	45.213	44.713	45.713	0								0	0	0	0.38822	1	8867	8867		2.5775	0	1		+		15352	10476	10064	10177	20887	20887					0.01988549347629487
PIVRCPVP	8	Unmodified	_PIVRCPVP_					0	0	0			REV__ENST00000462540.1_1_4:154475378-154479541:+|nuORF	REV__ENST00000462540.1_1_4:154475378-154479541:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7569580078125	2	440.757298	879.500044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.521	1	56.521	56.021	57.021	0								0	0	0	0.38822	1	12302	12302		2.8892	0	1		+		15353	8893	10065	10178	20888	20888					0.05547354096199797
PIWHREKYSFF	11	Unmodified	_PIWHREKYSFF_					0	0	0		ENST00000409111.2_1_2:197184567-197194349:-|nuORF;ENSG00000138411|ENST00000644978|HECW2	ENST00000409111.2_1_2:197184567-197194349:-|nuORF	ENST00000409111.2_1_2:197184567-197194349:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7945861816406	3	503.9261	1508.75647	0.28833	0.0001453	3.6826	0.0018558	3.971	0.0020011	503.9275007244744	88.782	0.31601	88.782	88.584	88.9	0					20	13	2	0	0	0	0.31097	1	22100	22100		1.3296	0.82369	1	47923			15354	2911	10066	10179	20889	20889					0.022441281341798458
PIWYPCHRP	9	Unmodified	_PIWYPCHRP_					0	0	0		MRGPRX1|p.R131P|1|0.38|ENSG00000170255|chr11:18934393-18934393|C/G|missense_variant	MRGPRX1|p.R131P|1|0.38|ENSG00000170255|chr11:18934393-18934393|C/G|missense_variant	MRGPRX1|p.R131P|1|0.38|ENSG00000170255|chr11:18934393-18934393|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7897338867188	2	584.789661	1167.56477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.992	1	20.088	19.588	20.588	0.095232								0	0	0	0.29233	1	1399	1399		0.6015	0	1				15355	7434	10067	10180	20890	20890					-0.012310710977999406
PIYDKLNL	8	Unmodified	_PIYDKLNL_					0	0	0		tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.278564453125	2	488.279118	974.543683	0.23544	0.00011496	-1.0387	-0.00050717	-0.80324	-0.00039221	488.27835833335826	91.113	0.1819	91.113	91.001	91.183	0					11	5	3	0	0	0	0.53345	1	22859	22859		5.7604	0	1	107670			15356	13524	10068	10181	20891	20891					0.05539242074314643
PIYKDDEY	8	Unmodified	_PIYKDDEY_					0	0	0		tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7508544921875	2	521.740022	1041.46549	0.29563	0.00015424	0.84917	0.00044305	1.1448	0.00059729	521.7404166658818	55.641	0.63409	55.707	55.432	56.066	0.065128					37	22	2	0	0	0	0.53257	1	11986	11986		6.3541	0	1	199630			15357	13485	10069	10182	20892	20892					-0.05358235301559944
PKAQNTVQVF	10	Unmodified	_PKAQNTVQVF_					0	0	0			REV__ENST00000471858.5_1_3:112693853-112693907:-|nuORF	REV__ENST00000471858.5_1_3:112693853-112693907:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2977905273438	2	566.31148	1130.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.49	1	106.49	105.99	106.99	0								0	0	0	0.33681	1	27462	27462		3.9444	0	1		+		15358	12034	10070	10183	20893	20893					0.04832816880320934
PKDALARQL	9	Unmodified	_PKDALARQL_					0	0	0			REV__ENSG00000204687|ENST00000377127|MAS1L	REV__ENSG00000204687|ENST00000377127|MAS1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7851257324219	2	506.300916	1010.58728	-0.21136	-0.00010701	-0.50886	-0.00025764	-0.72022	-0.00036465	506.3006959755209	29.841	0.36376	29.841	29.691	30.055	0					22	16	2	0	0	0	0.25644	1	4246	4246		3.9444	0	1	16766	+		15359	10953	10071	10184	20894	20894					0.08240851571463281
PKDFRARR	8	Unmodified	_PKDFRARR_					0	0	0		ENST00000487017.5_1_3:48603947-48604380:-|nuORF	ENST00000487017.5_1_3:48603947-48604380:-|nuORF	ENST00000487017.5_1_3:48603947-48604380:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.304324	1044.5941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.601	1	95.64	95.14	96.14	0.038872								0	0	0	0.38822	1	24051	24051		4.756	0	1				15360	6787	10072	10185	20895	20895					0.07358209242693192
PKDLDRYSRRR	11	Unmodified	_PKDLDRYSRRR_					0	0	0			REV__nc|ENSG00000134748|Q8NAV1-2|PRPF38A	REV__nc|ENSG00000134748|Q8NAV1-2|PRPF38A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2265319824219	3	487.939291	1460.79604	0.054901	2.6788E-05	-1.8229	-0.00088945	-1.768	-0.00086267	487.93861591019675	36.151	0.40617	36.233	36.049	36.455	0.081715					27	15	3	0	0	0	0.31101	1	6010	6010		0.45452	0.35968	1	47721	+		15361	9185	10073	10186	20896	20896					0.08407648137563228
PKEFILLGFSD	11	Unmodified	_PKEFILLGFSD_					0	0	0		ENSG00000204703|ENST00000377173|OR2B3	ENSG00000204703|ENST00000377173|OR2B3	ENSG00000204703|ENST00000377173|OR2B3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.358642578125	2	633.342446	1264.67034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.015	1	90.049	89.549	90.549	0.034065								0	0	0	0.18007	1	22350	22350		29.841	9.426	1				15362	5492	10074	10187	20897	20897					0.048591235088224494
PKERMHVMS	9	Unmodified	_PKERMHVMS_					0	0	0			REV__ENSG00000256294|ENST00000262894|ZNF225	REV__ENSG00000256294|ENST00000262894|ZNF225	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7799682617188	2	557.778436	1113.54232	0.29681	0.00016555	1.8423	0.0010276	2.1391	0.0011932	557.7799624331745	51.89	1.8734	51.89	51.239	53.113	0					206	65	5	0	0	0	0.22344	2	10994	10994;11076		15.847	4.2069	1	2896500	+		15363	11096	10075	10188	20898;20899	20898					-0.009910385577313718
PKERMHVMS	9	Unmodified	_PKERMHVMS_					0	0	0			REV__ENSG00000256294|ENST00000262894|ZNF225	REV__ENSG00000256294|ENST00000262894|ZNF225	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7803955078125	2	557.778436	1113.54232	0.47244	0.00026352	1.987	0.0011083	2.4595	0.0013719	557.7799490639568	51.812	1.8176	51.879	51.333	53.151	0.067173					185	71	5	0	0	0	0.22344	1	10832	10832		15.847	1.9411	1	2527700	+		15364	11096	10075	10188	20900	20900					-0.009910385577313718
PKEVRERIQK	10	Unmodified	_PKEVRERIQK_					0	0	0		ENST00000564987.1_1_16:23535694-23546228:-|nuORF;ENSG00000103356|ENST00000449606|EARS2	ENST00000564987.1_1_16:23535694-23546228:-|nuORF	ENST00000564987.1_1_16:23535694-23546228:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8826904296875	2	641.883136	1281.75172	0.14373	9.2256E-05	-0.70836	-0.00045469	-0.56463	-0.00036243	641.882615802387	90.07	0.71183	90.07	89.811	90.523	0					38	28	2	0	0	0	0.46656	1	22601	22601		1.6526	0	1	1073300			15365	1367	10076	10189	20901	20901					0.12211243991396259
PKGGGGGG	8	Unmodified	_PKGGGGGG_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.812744140625	1	586.29435	585.287074	0.71511	0.00041926	0.74587	0.0004373	1.461	0.00085656	586.2939513850342	104.86	0.072342	104.9	104.88	104.95	0.034004					9	7	2	0	0	0	0.3576	1	26818	26818		0	0	1	33038			15366	5038	10077	10190	20902	20902					-0.022158156392833916
PKGPRSRA	8	Unmodified	_PKGPRSRA_					0	0	0		ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.7591857910156	2	434.759218	867.503883	0.63957	0.00027806	-0.60542	-0.00026321	0.034157	1.485E-05	434.758908244329	82.61	1.1722	82.61	82.313	83.485	0					92	40	4	0	0	0	0.53494	1	20274	20274		4.756	0	1	2222400			15367	6296	10078	10191	20903	20903					0.06483159914273529
PKGPRSRA	8	Unmodified	_PKGPRSRA_					0	0	0		ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.75921630859375	2	434.759218	867.503883	0.17057	7.4156E-05	-0.035744	-1.554E-05	0.13482	5.8616E-05	434.75913448430816	82.559	1.1694	82.581	82.27	83.44	0.021744					91	41	4	0	0	0	0.53494	1	20134	20134		4.756	0	1	1727800			15368	6296	10078	10191	20904	20904					0.06483159914273529
PKGQCEQEEEV	11	Unmodified	_PKGQCEQEEEV_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.5323486328125	3	425.85557	1274.54488	-0.23241	-9.8971E-05	1.194	0.00050845	0.96155	0.00040948	425.8562336863177	31.072	0.54916	31.146	30.944	31.493	0.073782					83	27	6	0	0	0	0.31101	1	4576	4576		0.08335	0.08335	1	99717			15369	1912	10079	10192	20905	20905					-0.08140956409738465
PKHYGDTTL	9	Unmodified	_PKHYGDTTL_					0	0	0		nc|ENSG00000177354|Q711Q0-3|CEFIP;ENSG00000177354|ENST00000374144|C10orf71	nc|ENSG00000177354|Q711Q0-3|CEFIP	nc|ENSG00000177354|Q711Q0-3|CEFIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2608642578125	2	516.261456	1030.50836	0.057819	2.985E-05	-0.13266	-6.8489E-05	-0.074844	-3.8639E-05	516.261123103236	44.615	0.39561	44.702	44.51	44.906	0.08754					21	14	2	0	0	0	0.30397	1	8595	8595		6.2058	0	1	54754			15370	4700	10080	10193	20906	20906					-0.005674204534898308
PKIAAHHG	8	Unmodified	_PKIAAHHG_					0	0	0			REV__ENST00000466067.1_1_2:29147965-29158512:+|nuORF	REV__ENST00000466067.1_1_2:29147965-29158512:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8917541503906	2	415.735212	829.455871	-0.1862	-7.741E-05	0.16372	6.8064E-05	-0.02248	-9.3456E-06	415.7351595550265	33.325	0.30911	33.399	33.262	33.571	0.074322					18	11	2	0	0	0	0.3576	1	5214	5214		2.5775	0.51773	1	17305	+		15371	9957	10081	10194	20907	20907					0.034320859942340576
PKIKFHLGIL	10	Unmodified	_PKIKFHLGIL_					0	0	0			REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF	REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3779296875	2	583.376426	1164.7383	0.20256	0.00011817	0.92047	0.00053698	1.123	0.00065515	583.3770736418778	40.228	0.51946	40.318	40.138	40.657	0.089642					27	19	2	0	0	0	0.47318	1	7284	7284		0.40072	0	1	39117	+		15372	8680	10082	10195	20908	20908					0.16252037950107479
PKIWPPFLRR	10	Unmodified	_PKIWPPFLRR_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.75848388671875	3	437.267909	1308.7819	0.34755	0.00015197	-0.92255	-0.0004034	-0.575	-0.00025143	437.2672909512621	47.582	0.80332	47.662	47.175	47.978	0.080032					46	31	2	0	0	0	0.31816	1	9468	9468		3.3196	0	1	49854	+		15373	10341	10083	10196	20909	20909					0.13985647447248084
PKKLRRRRRRA	11	Unmodified	_PKKLRRRRRRA_					0	0	0			REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF	REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.3351135253906	3	498.334309	1491.9811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.56	1	119.56	119.06	120.06	0								0	0	0	0.34212	1	30110	30110		0	0	1		+		15374	11557	10084	10197	20910	20910					0.25478720518526643
PKLDSVTFI	9	Unmodified	_PKLDSVTFI_					0	0	0			REV__ENSG00000173376|ENST00000379692|NDNF	REV__ENSG00000173376|ENST00000379692|NDNF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2800598144531	2	510.292225	1018.5699	0.27763	0.00014167	1.9668	0.0010037	2.2445	0.0011453	510.7949571105686	50.463	0.07885	50.536	50.5	50.579	0.07312					4	2	2	0	0	0	0.25875	1	10313	10313		1.8442	0	1	29205	+		15375	10318	10085	10198	20911	20911					0.061355112458159056
PKMKFYQNF	9	Unmodified	_PKMKFYQNF_					0	0	0			REV__ENSG00000139163|ENST00000266517|ETNK1	REV__ENSG00000139163|ENST00000266517|ETNK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.790771484375	2	601.804977	1201.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.116	1	89.116	88.616	89.616	0								0	0	0	0.27427	1	22234	22234		4.3292	0.38484	1		+		15376	9334	10086	10199	20912	20912					0.002666624965968367
PKPRYGQE	8	Unmodified	_PKPRYGQE_					0	0	0			REV__ENST00000537880.1_1_12:110353099-110354425:+|nuORF	REV__ENST00000537880.1_1_12:110353099-110354425:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.93536376953125	2	487.756341	973.498129	-0.255	-0.00012438	0.11215	5.4704E-05	-0.14285	-6.9676E-05	487.75636320063427	45.733	0.735	45.733	45.586	46.321	0					34	25	2	0	0	0	0.3576	1	9078	9078		2.3027	0.24298	1	68620	+		15377	9341	10087	10200	20913	20913					0.01032016611952713
PKPVEKKKK	9	Unmodified	_PKPVEKKKK_					0	0	0			REV__nc|ENSG00000131759|P10276-3|RARA	REV__nc|ENSG00000131759|P10276-3|RARA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.37646484375	2	541.358234	1080.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.23	1	111.25	110.75	111.75	0.015678								0	0	0	0.25992	1	28368	28368		7.2892	3.3448	1		+		15378	9094	10088	10201	20914	20914					0.16479161053416647
PKRKRSSRI	9	Unmodified	_PKRKRSSRI_					0	0	0		ENST00000482439.6_1_12:72274268-72274346:+|nuORF	ENST00000482439.6_1_12:72274268-72274346:+|nuORF	ENST00000482439.6_1_12:72274268-72274346:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.912109375	2	564.359631	1126.70471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.44	1	114.46	113.96	114.96	0.013336								0	0	0	0.2927	1	29127	29127		0.52476	0	1				15379	6761	10089	10202	20915	20915					0.14642429230957532
PKSPGVPR	8	Unmodified	_PKSPGVPR_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5557861328125	2	419.250695	836.486836	0.13948	5.8476E-05	4.457	0.0018686	4.5965	0.0019271	419.2524663883765	38.744	0.38853	38.831	38.652	39.04	0.08688					17	14	2	0	0	0	0.3576	1	6849	6849		2.0598	0	1	34411			15380	1925	10090	10203	20916	20916					0.06205239308462751
PKSPGVPR	8	Unmodified	_PKSPGVPR_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	419.250695	836.486836	0.40208	0.00016857	4.1545	0.0017418	4.5566	0.0019103	419.25234126626805	38.791	0.43136	38.791	38.625	39.057	0	-0.020231	-9.2031E-05	NaN	2.0598	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29440			15381	1925	10090	10203							0.06205239308462751
PKSRKVPH	8	Unmodified	_PKSRKVPH_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7895202636719	2	474.790518	947.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.29	1	108.31	107.81	108.81	0.022224								0	0	0	0.38822	1	27722	27722		10.824	2.2306	1				15382	7578	10091	10204	20917	20917					0.09060305982472983
PKSWAWQEL	9	Unmodified	_PKSWAWQEL_					0	0	0			REV__ENSG00000037637|ENST00000375592|FBXO42	REV__ENSG00000037637|ENST00000375592|FBXO42	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2294311523438	2	572.792924	1143.57129	0.1614	9.2446E-05	0.20585	0.00011791	0.36724	0.00021036	572.7931660920352	50.491	0.50848	50.491	50.348	50.856	0					21	17	2	0	0	0	0.2446	1	10492	10492		11.64	0	1	48981	+		15383	8018	10092	10205	20918	20918					0.005251453345636037
PKTDILKENLL	11	Unmodified	_PKTDILKENLL_					0	0	0			REV__tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	REV__tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.384765625	2	642.382103	1282.74965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.041	1	90.075	89.575	90.575	0.034065								0	0	0	0.3074	1	22358	22358		12.241	0.74595	1		+		15384	13135	10093	10206	20919	20919					0.11958770462956636
PKTKKREEIL	10	Unmodified	_PKTKKREEIL_					0	0	0		A1CF|p.R418Kfs*7|1|0.16|ENSG00000148584|chr10:50813951-50813952|-/T|frameshift_variant;nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF	A1CF|p.R418Kfs*7|1|0.16|ENSG00000148584|chr10:50813951-50813952|-/T|frameshift_variant	A1CF|p.R418Kfs*7|1|0.16|ENSG00000148584|chr10:50813951-50813952|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3836669921875	2	621.382437	1240.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.88	1	107.9	107.4	108.4	0.022224								0	0	0	0.33528	1	27625	27625		5.7319	0.43497	1				15385	1	10094	10207	20920	20920					0.13957609902649892
PKTRESSLK	9	Unmodified	_PKTRESSLK_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3029174804688	2	523.303655	1044.59276	0.56542	0.00029589	-0.78269	-0.00040958	-0.21726	-0.00011369	523.303285734493	85.191	0.71498	85.214	84.812	85.527	0.023125					55	29	2	0	0	0	0.30757	1	20831	20831		5.7319	0	1	287440			15386	2874	10095	10208	20921	20921					0.07224530363282611
PKVILNLLKKQ	11	Unmodified	_PKVILNLLKKQ_					0	0	0		OR4K17|p.C210Vfs*12|1|0.1|ENSG00000176230|chr14:20118029-20118029|T/-|frameshift_variant;ENSG00000176230|ENST00000641386|OR4K17	OR4K17|p.C210Vfs*12|1|0.1|ENSG00000176230|chr14:20118029-20118029|T/-|frameshift_variant	OR4K17|p.C210Vfs*12|1|0.1|ENSG00000176230|chr14:20118029-20118029|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.8779296875	2	647.434473	1292.85439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.49	1	109.49	108.99	109.99	0								0	0	0	0.33873	1	28169	28169		1.1933	0	1				15387	4655	10096	10209	20922	20922					0.2196793673015236
PLAAPRYR	8	Unmodified	_PLAAPRYR_					0	0	0			REV__nc|ENSG00000158850|O60512-2|B4GALT3	REV__nc|ENSG00000158850|O60512-2|B4GALT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2877197265625	2	472.277244	942.539935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.696	1	89.73	89.23	90.23	0.034065								0	0	0	0.38822	1	22252	22252		2.8892	0.31174	1		+		15388	12824	10097	10210	20923	20923					0.06636617091123753
PLAARKAW	8	Unmodified	_PLAARKAW_					0	0	0			REV__ENST00000547912.1_1_12:56676173-56676410:-|nuORF	REV__ENST00000547912.1_1_12:56676173-56676410:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7724914550781	2	456.774337	911.534121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.283	1	82.305	81.805	82.805	0.021744								0	0	0	0.38822	1	19996	19996		2.3027	0.24298	1		+		15389	8084	10098	10211	20924	20924					0.07481518579459134
PLAARTRTA	9	Unmodified	_PLAARTRTA_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7855224609375	2	478.785433	955.556313	-0.1327	-6.3533E-05	0.85365	0.00040871	0.72095	0.00034518	478.7856374932871	86.93	0.69528	86.93	86.738	87.433	0					51	29	2	0	0	0	0.30757	1	21660	21660		5.7319	2.1354	1	1004900	+		15390	11426	10099	10212	20925	20925					0.0767569825721921
PLADPYII	8	Unmodified	_PLADPYII_					0	0	0		tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.25433349609375	2	451.255111	900.49567	0.64043	0.000289	-0.80411	-0.00036286	-0.16368	-7.386E-05	451.2546583700314	69.498	0.69611	69.498	69.347	70.043	0					33	23	2	0	0	0	0.49441	1	16292	16292		13.508	0	1	91333			15391	13581	10100	10213	20926	20926					0.0414416815427785
PLADPYII	8	Unmodified	_PLADPYII_					0	0	0		tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	451.255111	900.49567	0.17658	7.9681E-05	-0.83117	-0.00037507	-0.65459	-0.00029539	451.25463630181383	69.618	0.57811	69.68	69.278	69.857	0.062042	0.090916	-1.1474E-05	NaN	13.508	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55528			15392	13581	10100	10213							0.0414416815427785
PLAFLVIMA	9	Unmodified	_PLAFLVIMA_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7909240722656	2	487.790807	973.56706	0.2243	0.00010941	-0.051655	-2.5197E-05	0.17265	8.4216E-05	487.7906907049716	78.727	3.2748	78.727	77.685	80.959	0					178	113	3	0	0	0	0.31136	2	19302	19302;19532		5.2307	2.3027	1	978190			15393	1855	10101	10214	20927;20928	20927					0.07921964587285402
PLAFLVIMA	9	Unmodified	_PLAFLVIMA_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.79071044921875	2	487.790807	973.56706	0.2262	0.00011034	-0.093256	-4.5489E-05	0.13295	6.4851E-05	487.7907044487439	78.774	2.9857	78.804	78.021	81.007	0.030159					180	105	4	0	0	0	0.2796	5	19205	18993;19205;19381;19431;19489		9.3474	0	1	1403600			15394	1855	10101	10214	20929;20930;20931;20932;20933	20930					0.07921964587285402
PLAKRTTR	8	Unmodified	_PLAKRTTR_					0	0	0			REV__ENST00000318887.7_1_3:88199040-88199157:+|nuORF	REV__ENST00000318887.7_1_3:88199040-88199157:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.79534912109375	2	471.795801	941.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.806	1	91.806	91.306	92.306	0								0	0	0	0.38822	1	23054	23054		2.8892	0	1		+		15395	11388	10102	10215	20934	20934					0.1039228863688777
PLAPRRRR	8	Unmodified	_PLAPRRRR_					0	0	0		ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.3274230957031	2	511.328134	1020.64171	0.46997	0.00024031	-1.6481	-0.00084274	-1.1782	-0.00060243	511.3270938853681	91.807	0.56258	91.807	91.602	92.164	0					41	20	3	0	0	0	0.53817	1	23052	23052		2.5775	0	1	194760			15396	5200	10103	10216	20935	20935					0.13221908233549584
PLAPRRRR	8	Unmodified	_PLAPRRRR_					0	0	0		ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	511.328134	1020.64171	0.3276	0.00016751	-1.3062	-0.0006679	-0.97861	-0.00050039	511.3273503310124	91.729	0.51939	91.766	91.586	92.105	0.03653	-0.020774	0.00010689	NaN	2.5775	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556530			15397	5200	10103	10216							0.13221908233549584
PLAQEEDSEP	10	Unmodified	_PLAQEEDSEP_					0	0	0		nc|ENSG00000139574|O15130-2|NPFF;ENST00000448979.3_1_12:53900562-53901037:-|nuORF	nc|ENSG00000139574|O15130-2|NPFF	nc|ENSG00000139574|O15130-2|NPFF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7478637695312	2	557.748576	1113.4826	0.47345	0.00026407	-1.9465	-0.0010857	-1.4731	-0.00082159	557.7476678534248	47.064	0.58285	47.064	46.789	47.372	0					47	20	3	0	0	0	0.35104	2	9450	9405;9450		17.113	3.4953	1	277270			15398	6560	10104	10217	20936;20937	20937					-0.06960359486402012
PLAQEEDSEP	10	Unmodified	_PLAQEEDSEP_					0	0	0		nc|ENSG00000139574|O15130-2|NPFF;ENST00000448979.3_1_12:53900562-53901037:-|nuORF	nc|ENSG00000139574|O15130-2|NPFF	nc|ENSG00000139574|O15130-2|NPFF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7478637695312	2	557.748576	1113.4826	0.52352	0.00029199	-1.5266	-0.00085143	-1.003	-0.00055944	557.7477034177236	46.965	0.64079	47.048	46.79	47.431	0.083096					52	24	3	0	0	0	0.35104	1	9278	9278		17.113	3.2068	1	241690			15399	6560	10104	10217	20938	20938					-0.06960359486402012
PLAVRRKF	8	Unmodified	_PLAVRRKF_					0	0	0			REV__ENSG00000108018|ENST00000263054|SORCS1	REV__ENSG00000108018|ENST00000263054|SORCS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.81756591796875	2	493.816536	985.618519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.2	1	103.24	102.74	103.74	0.040916								0	0	0	0.38822	1	26352	26352		0.79363	0	1		+		15400	8608	10105	10218	20939	20939					0.12513469396230903
PLCFWFVL	8	Unmodified	_PLCFWFVL_					0	0	0			REV__ENSG00000182035|ENST00000537425|ADIG	REV__ENSG00000182035|ENST00000537425|ADIG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7824096679688	2	512.769874	1023.5252	0.31487	0.00016145	2.0506	0.0010515	2.3655	0.0012129	512.7715480679758	78.995	0.58157	78.995	78.73	79.311	0					30	19	2	0	0	0	0.35256	1	19096	19096		17.087	0	1	48021	+		15401	10550	10106	10219	20940	20940					0.014374088987665345
PLCFWFVL	8	Unmodified	_PLCFWFVL_					0	0	0			REV__ENSG00000182035|ENST00000537425|ADIG	REV__ENSG00000182035|ENST00000537425|ADIG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2825317382812	2	512.769874	1023.5252	0.30446	0.00015612	1.0559	0.00054143	1.3604	0.00069755	512.7714537852862	79.044	0.65432	79.074	78.787	79.441	0.030151					30	22	2	0	0	0	0.35759	1	18949	18949		11.114	0	1	48091	+		15402	10550	10106	10219	20941	20941					0.014374088987665345
PLCSQHPP	8	Unmodified	_PLCSQHPP_					0	0	0			REV__ENST00000374089.5_1_1:27426540-27426699:-|nuORF	REV__ENST00000374089.5_1_1:27426540-27426699:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.2483215332031	2	439.713088	877.411622	0.34595	0.00015212	0.95079	0.00041807	1.2967	0.00057019	439.7134221443176	58.202	0.28198	58.202	57.935	58.217	0					16	9	2	0	0	0	0.3576	1	12753	12753		5.7604	0	1	431550	+		15403	11625	10107	10220	20942	20942					-0.0319868621426167
PLDGVTGFLVL	11	Unmodified	_PLDGVTGFLVL_					0	0	0		nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.82666015625	2	565.826432	1129.63831	0.1463	8.2779E-05	0.55682	0.00031507	0.70312	0.00039784	565.8268095981873	89.354	0.951	89.354	88.982	89.933	0					168	37	6	0	0	0	0.34344	1	22376	22376		13.042	13.042	1	3181700			15404	1183	10108	10221	20943	20943					0.0786775582566861
PLDKEKGETL	10	Unmodified	_PLDKEKGETL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3089599609375	2	565.308603	1128.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.897	1	38.897	38.397	39.397	0								0	0	0	0.33916	1	6960	6960		1.1933	0	1				15405	1395	10109	10222	20944	20944					0.04349673578008151
PLDLLCCESL	10	Unmodified	_PLDLLCCESL_					0	0	0		ENST00000446265.3_1:149648157-149648721:+|nuORF	ENST00000446265.3_1:149648157-149648721:+|nuORF	ENST00000446265.3_1:149648157-149648721:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2634887695312	2	553.267035	1104.51952	0.38209	0.0002114	-3.3547	-0.001856	-2.9726	-0.0016446	553.2634210811258	87.25	0.50804	87.25	87.095	87.603	0					42	19	3	0	0	0	0.28643	1	21661	21661		24.021	1.2843	1	220480			15406	6542	10110	10223	20945	20945					-0.02856102465875665
PLDPVAYR	8	Unmodified	_PLDPVAYR_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.2475891113281	2	465.75581	929.497067	-0.20341	-9.4737E-05	-0.11414	-5.3163E-05	-0.31755	-0.0001479	465.7557257153815	43.873	0.39278	43.961	43.793	44.186	0.088924					23	13	3	0	0	0	0.35759	1	8292	8292		10.183	0.83596	1	84125			15407	1559	10111	10224	20946	20946					0.02949802243040267
PLEDAFILCF	10	Unmodified	_PLEDAFILCF_					0	0	0			REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF	REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2923583984375	2	584.291368	1166.56818	0.72671	0.00042461	-0.37428	-0.00021869	0.35243	0.00020592	584.2911391836584	96.439	0.3661	96.479	96.379	96.745	0.039772					31	18	2	0	0	0	0.42335	1	24316	24316		9.3831	0	1	131650	+		15408	10969	10112	10225	20947	20947					-0.008438658344402938
PLEDDDESC	9	Unmodified	_PLEDDDESC_					0	0	0			REV__ENSG00000169840|ENST00000302945|GSX1	REV__ENSG00000169840|ENST00000302945|GSX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.80328369140625	2	511.684587	1021.35462	0.36539	0.00018696	3.4352	0.0017578	3.8006	0.0019447	511.6843021209809	47.146	0.11926	47.229	47.124	47.244	0.083096					5	4	2	0	0	0	0.25809	1	9301	9301		2.3027	0	1	18830	+		15409	10188	10113	10226	20948	20948					-0.15520243071966888
PLEDQTQL	8	Unmodified	_PLEDQTQL_					0	0	0		ENST00000600463.1_1_19:18288394-18288718:+|nuORF;IFI30|p.L222F|1|0.42|ENSG00000216490|chr19:18177738-18177738|C/T|missense_variant;ENSG00000216490|ENST00000407280|IFI30	ENST00000600463.1_1_19:18288394-18288718:+|nuORF	ENST00000600463.1_1_19:18288394-18288718:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2405700683594	2	472.24019	942.465826	0.16277	7.6866E-05	0.065678	3.1016E-05	0.22845	0.00010788	472.24014293467656	59.881	0.82675	59.881	59.656	60.483	0					64	30	3	0	0	0	0.35121	1	13446	13446		30.637	0	1	776950			15410	7296	10114	10227	20949	20949					-0.007708155817113038
PLEDQTQL	8	Unmodified	_PLEDQTQL_					0	0	0		ENST00000600463.1_1_19:18288394-18288718:+|nuORF;IFI30|p.L222F|1|0.42|ENSG00000216490|chr19:18177738-18177738|C/T|missense_variant;ENSG00000216490|ENST00000407280|IFI30	ENST00000600463.1_1_19:18288394-18288718:+|nuORF	ENST00000600463.1_1_19:18288394-18288718:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.24017333984375	2	472.24019	942.465826	-0.094381	-4.457E-05	0.4128	0.00019494	0.31842	0.00015037	472.2402678467663	59.775	0.72186	59.847	59.675	60.397	0.072342					56	27	3	0	0	0	0.18137	2	13133	13133;13240		43.858	5.8843	1	630170			15411	7296	10114	10227	20950;20951	20950					-0.007708155817113038
PLEKDKIE	8	Unmodified	_PLEKDKIE_					0	0	0			REV__nc|ENSG00000179583|P33076|CIITA	REV__nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2738952636719	2	486.274032	970.533512	-0.16555	-8.0505E-05	0.35882	0.00017448	0.19326	9.3978E-05	486.2741320821683	39.431	0.5698	39.431	39.237	39.806	0					41	20	3	0	0	0	0.50815	1	7104	7104		11.64	1.5664	1	239140	+		15412	10479	10115	10228	20952	20952					0.04706634349099659
PLEKETLK	8	Unmodified	_PLEKETLK_					0	0	0		NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.25091552734375	2	479.2844	956.554247	-0.074225	-3.5575E-05	0.16162	7.7463E-05	0.087397	4.1888E-05	479.28436725238646	49.235	0.9884	49.235	48.888	49.876	0					97	34	5	0	0	0	0.53118	1	10014	10014		7.2892	1.0834	1	1172200			15413	2590	10116	10229	20953	20953					0.07423224728768218
PLETSAESL	9	Unmodified	_PLETSAESL_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.73992919921875	2	473.740022	945.465492	0.16907	8.0095E-05	0.1609	7.6227E-05	0.32997	0.00015632	473.7399169984093	59.976	0.55243	59.976	59.758	60.31	0					33	19	3	0	0	0	0.22344	1	13391	13391		15.847	1.0089	1	196490			15414	3245	10117	10230	20954	20954					-0.009422353015565932
PLETSAESL	9	Unmodified	_PLETSAESL_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	473.740022	945.465492	-0.10273	-4.8666E-05	0.21758	0.00010307	0.11485	5.4408E-05	473.73998562313534	59.9	0.58699	59.972	59.779	60.366	0.072338	-0.0021189	4.4684E-05	NaN	15.847	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142420			15415	3245	10117	10230							-0.009422353015565932
PLEVYTILW	9	Unmodified	_PLEVYTILW_					0	0	0			REV__ENST00000533445.1_1_11:4076769-4103426:+|nuORF	REV__ENST00000533445.1_1_11:4076769-4103426:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3157958984375	2	567.3157	1132.61685	0.34083	0.00019336	0.044747	2.5386E-05	0.38558	0.00021874	567.3156226827665	94.383	0.78901	94.383	94.107	94.896	0					79	33	3	0	0	0	0.25579	1	23842	23842		4.3292	0.38484	1	347750	+		15416	10114	10118	10231	20955	20955					0.055843707969415846
PLFADAGLPDQ	11	Unmodified	_PLFADAGLPDQ_					0	0	0			REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2882080078125	2	572.287671	1142.56079	0.17255	9.8751E-05	1.0153	0.00058103	1.1878	0.00067978	572.2880713110239	103.49	0.37704	103.49	103.29	103.67	0					47	33	2	0	0	0	0.38984	1	26630	26630		6.6304	0.42459	1	196790	+		15417	10755	10119	10232	20956	20956					-0.004788821105421448
PLFADAGLPDQ	11	Unmodified	_PLFADAGLPDQ_					0	0	0			REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.2883911132812	2	572.287671	1142.56079	0.368	0.0002106	0.74678	0.00042737	1.1148	0.00063797	572.2879864683318	103.47	0.20163	103.5	103.39	103.59	0.03791					26	19	2	0	0	0	0.39356	1	26419	26419		5.7834	1.4542	1	305780	+		15418	10755	10119	10232	20957	20957					-0.004788821105421448
PLFERPVDSVP	11	Unmodified	_PLFERPVDSVP_					0	0	0			REV__ENST00000563856.1_1_16:88943386-88947362:-|nuORF	REV__ENST00000563856.1_1_16:88943386-88947362:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8381958007812	2	628.337695	1254.66084	0.45501	0.0002859	2.5908	0.0016279	3.0458	0.0019138	628.3392523610106	47.373	0.27986	47.456	47.297	47.577	0.083092					12	10	2	0	0	0	0.31068	1	9389	9389		4.5289	0.33936	1	46215	+		15419	12492	10120	10233	20958	20958					0.04369355223275306
PLFFSFMLI	9	Unmodified	_PLFFSFMLI_					0	0	0			REV__ENST00000528638.1_1_11:77300495-77320419:+|nuORF	REV__ENST00000528638.1_1_11:77300495-77320419:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.8057250976562	2	557.803914	1113.59328	0.40688	0.00022696	2.6824	0.0014963	3.0893	0.0017232	557.8049939883226	71.601	0.80583	71.601	71.297	72.103	0					56	28	3	0	0	0	0.091303	1	16923	16923		44.407	8.3628	1	604610	+		15420	10447	10121	10234	20959	20959					0.04102233758794682
PLFKIGHKRR	10	Unmodified	_PLFKIGHKRR_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3935546875	2	626.393474	1250.77239	0.28526	0.00017869	1.2143	0.00076065	1.4996	0.00093933	626.3936913665522	107.9	0.050179	107.92	107.89	107.94	0.022224					15	6	3	0	0	0	0.46656	1	27629	27629		1.6526	0	1	20895000			15421	2286	10122	10235	20960	20960					0.1570387916171967
PLFTTTQLFT	10	Unmodified	_PLFTTTQLFT_					0	0	0			REV__ENSG00000158470|ENST00000371711|B4GALT5	REV__ENSG00000158470|ENST00000371711|B4GALT5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7979125976562	2	584.816064	1167.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.685	1	82.707	82.207	83.207	0.021744								0	0	0	0.27696	1	20119	20119		20.454	6.5476	1		+		15422	9806	10123	10236	20961	20961					0.040471654459679485
PLFVTWKI	8	Unmodified	_PLFVTWKI_					0	0	0		ENST00000473662.1_1_X:109462834-109560930:-|nuORF;nc|ENSG00000101935|Q9Y4X0-4|AMMECR1;ENSG00000101935|ENST00000262844|AMMECR1	ENST00000473662.1_1_X:109462834-109560930:-|nuORF	ENST00000473662.1_1_X:109462834-109560930:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.8144836425781	2	502.302396	1002.59024	0.28551	0.00014341	0.78284	0.00039322	1.0684	0.00053664	502.80526754880407	91.729	0.27338	91.766	91.586	91.859	0.03653					13	9	2	0	0	0	0.53118	1	22848	22848		7.2892	1.5574	1	91795			15423	1280	10124	10237	20962	20962					0.08904726696255238
PLGKLIKKG	9	Unmodified	_PLGKLIKKG_					0	0	0		HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.3287048339844	2	477.328945	952.643337	0.021185	1.0112E-05	0.19309	9.2167E-05	0.21427	0.00010228	477.3289200815804	82.805	0.85008	82.827	82.454	83.304	0.021744					43	29	2	0	0	0	0.34704	1	20190	20190		0.52476	0	1	104470			15424	3148	10125	10238	20963	20963					0.1651210447895437
PLGLDLKNLRL	11	Unmodified	_PLGLDLKNLRL_					0	0	0		SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant;ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3920288085938	2	626.392805	1250.77106	0.28696	0.00017975	-1.493	-0.0009352	-1.206	-0.00075545	626.391634577478	108.1	0.10767	108.13	108.07	108.17	0.022232					48	16	4	0	0	0	0.40453	1	27669	27669		3.2813	0	1	12288000			15425	667	10126	10239	20964	20964					0.15570200282309088
PLGPEPLTL	9	Unmodified	_PLGPEPLTL_					0	0	0			REV__ENST00000464431.1_1_3:127396482-127396803:+|nuORF	REV__ENST00000464431.1_1_3:127396482-127396803:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.27490234375	2	468.773668	935.532783	0.17251	8.0869E-05	-0.21582	-0.00010117	-0.04331	-2.0303E-05	468.77348755635376	78.25	0.40462	78.25	78.043	78.448	0					25	13	2	0	0	0	0.22344	1	18966	18966		15.847	0	1	124470	+		15426	11983	10127	10240	20965	20965					0.06243839700039189
PLGTEDHH	8	Unmodified	_PLGTEDHH_					0	0	0		nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN	nc|ENSG00000085274|Q9NPC7-2|MYNN	nc|ENSG00000085274|Q9NPC7-2|MYNN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2092590332031	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.9	1	102.94	102.44	103.44	0.040916								0	0	0	0.38822	1	26264	26264		2.5775	1.7838	1				15427	955	10128	10241	20966	20966					-0.05213122210193433
PLGVDRELL	9	Unmodified	_PLGVDRELL_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2952880859375	2	506.295299	1010.57605	0.1268	6.4196E-05	-0.56718	-0.00028716	-0.44039	-0.00022297	506.2949529675129	59.493	0.53872	59.493	59.219	59.758	0					34	21	2	0	0	0	0.22344	1	13190	13190		15.847	0	1	156830			15428	2341	10129	10242	20967	20967					0.0711802947733986
PLGVDRELL	9	Unmodified	_PLGVDRELL_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2951965332031	2	506.295299	1010.57605	0.13283	6.7249E-05	-0.47538	-0.00024068	-0.34255	-0.00017343	506.2949765937929	59.358	0.49148	59.43	59.203	59.695	0.072342					31	18	2	0	0	0	0.26684	1	13037	13037		10.824	0	1	155420			15429	2341	10129	10242	20968	20968					0.0711802947733986
PLHEGPLR	8	Unmodified	_PLHEGPLR_					0	0	0			REV__ENST00000527545.1_1_8:144917610-144918087:-|nuORF	REV__ENST00000527545.1_1_8:144917610-144918087:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7610168457031	2	459.761426	917.5083	-0.22755	-0.00010462	0.12905	5.9331E-05	-0.098507	-4.529E-05	459.7614150070245	40.773	0.82346	40.773	40.53	41.354	0					48	28	3	0	0	0	0.3576	1	7509	7509		3.9444	0	1	234740	+		15430	12338	10130	10243	20969	20969					0.04624624337179739
PLHGLLFF	8	Unmodified	_PLHGLLFF_					0	0	0		ENST00000332995.11_1_6:13288134-13288596:+|nuORF	ENST00000332995.11_1_6:13288134-13288596:+|nuORF	ENST00000332995.11_1_6:13288134-13288596:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2749938964844	2	472.273638	942.532724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.544	1	56.544	56.044	57.044	0								0	0	0	0.38822	1	12309	12309		11.114	1.767	1				15431	6063	10131	10244	20970	20970					0.059158844907074126
PLHQSFYKFL	10	Unmodified	_PLHQSFYKFL_					0	0	0			REV__nc|ENSG00000127585|Q8N461-2|FBXL16	REV__nc|ENSG00000127585|Q8N461-2|FBXL16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.3026123046875	3	427.232641	1278.67609	0.18467	7.8898E-05	-0.37958	-0.00016217	-0.19491	-8.3272E-05	427.23254359281304	58.975	0.74511	58.975	58.79	59.535	0					43	27	2	0	0	0	0.31754	1	13143	13143		6.1918	0.89496	1	191070	+		15432	9003	10132	10245	20971	20971					0.04790266811141919
PLIGLRAAE	9	Unmodified	_PLIGLRAAE_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2970886230469	2	470.284734	938.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.112	1	57.181	56.681	57.681	0.068375								0	0	0	0.22377	1	12344	12344		14.582	0	1		+		15433	8314	10133	10246	20972	20972					0.08318064168463479
PLIIVCLF	8	Unmodified	_PLIIVCLF_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.268798828125	2	459.280075	916.545597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.521	1	48.521	48.021	49.021	0								0	0	0	0.38822	1	9864	9864		0.79363	0	1				15434	758	10134	10247	20973	20973					0.08398579558570418
PLIVRYFR	8	Unmodified	_PLIVRYFR_					0	0	0		ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2719116210938	2	532.324194	1062.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.52	1	107.52	107.02	108.02	0								0	0	0	0.38822	1	27756	27756		9.3474	1.4373	1				15435	2236	10135	10248	20974	20974					0.10502336193394513
PLLDAYHTL	9	Unmodified	_PLLDAYHTL_					0	0	0			REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3284912109375	2	521.782025	1041.5495	0.26883	0.00014027	-0.32563	-0.00016991	-0.056801	-2.9638E-05	521.7816809301094	78.379	0.47533	78.379	78.176	78.651	0					32	15	3	0	0	0	0.24263	1	19006	19006		12.532	0	1	278400	+		15436	9129	10136	10249	20975	20975					0.030383405859765844
PLLDNSNH	8	Unmodified	_PLLDNSNH_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.2247009277344	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.272	1	93.272	92.772	93.772	0								0	0	0	0.38822	1	23499	23499		6.3541	0	1		+		15437	10275	10137	10250	20976	20976					-0.022685491760967125
PLLDNSNH	8	Unmodified	_PLLDNSNH_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2248229980469	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.222	1	93.259	92.759	93.759	0.037369								0	0	0	0.38822	1	23324	23324		6.3541	0	1		+		15438	10275	10137	10250	20977	20977					-0.022685491760967125
PLLDNSNH	8	Unmodified	_PLLDNSNH_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2266540527344	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.27	1	93.308	92.808	93.808	0.037369								0	0	0	0.38822	1	23339	23339		2.8892	0	1		+		15439	10275	10137	10250	20978	20978					-0.022685491760967125
PLLDNSNH	8	Unmodified	_PLLDNSNH_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2247314453125	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.473	1	93.511	93.011	94.011	0.037369								0	0	0	0.38822	1	23401	23401		2.8892	0	1		+		15440	10275	10137	10250	20979	20979					-0.022685491760967125
PLLDNSNH	8	Unmodified	_PLLDNSNH_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2256774902344	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.742	1	93.779	93.279	94.279	0.037369								0	0	0	0.38822	1	23483	23483		2.8892	0	1		+		15441	10275	10137	10250	20980	20980					-0.022685491760967125
PLLDRRGLS	9	Unmodified	_PLLDRRGLS_					0	0	0			REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2	REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.8052978515625	2	513.806365	1025.59818	0.34322	0.00017635	-2.0176	-0.0010366	-1.6743	-0.00086029	513.8051777186851	91.729	0.27198	91.766	91.667	91.939	0.03653					13	9	2	0	0	0	0.25644	1	22870	22870		3.9444	1.0552	1	205130	+		15442	8986	10138	10251	20981	20981					0.08640253945759468
PLLHPHGP	8	Unmodified	_PLLHPHGP_					0	0	0			REV__ENST00000372242.7_1_1:45101583-45102057:-|nuORF	REV__ENST00000372242.7_1_1:45101583-45102057:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8823547363281	2	434.245412	866.476272	0.30606	0.00013291	-1.4101	-0.00061231	-1.104	-0.00047941	434.2447879212119	101.56	0.13458	101.61	101.54	101.68	0.042656					10	8	2	0	0	0	0.3576	1	25874	25874		0.79363	0	1	25608	+		15443	11605	10139	10252	20982	20982					0.037692566540386
PLLIQSFLAK	10	Unmodified	_PLLIQSFLAK_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3534545898438	2	565.352617	1128.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.47	1	112.48	111.98	112.98	0.014595								0	0	0	0.33528	1	28692	28692		5.7319	1.4026	1		+		15444	8592	10140	10253	20983	20983					0.13148338959263128
PLLLAIELDF	10	Unmodified	_PLLLAIELDF_					0	0	0			REV__ENSG00000198840|ENST00000361227|MT-ND3	REV__ENSG00000198840|ENST00000361227|MT-ND3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3367309570312	2	572.336633	1142.65871	0.025683	1.4699E-05	0.27507	0.00015744	0.30076	0.00017213	572.3367156093298	105.62	0.32181	105.62	105.42	105.75	0					61	34	2	0	0	0	0.46746	1	27166	27166		1.4819	0	1	251210	+		15445	10919	10141	10254	20984	20984					0.09308926485437041
PLLLHALLL	9	Unmodified	_PLLLHALLL_					0	0	0		ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.8392639160156	2	501.839146	1001.66374	0.43675	0.00021918	0.0043462	2.1811E-06	0.44109	0.00022136	501.83903369497614	87.733	0.80415	87.733	87.455	88.259	0					60	29	3	0	0	0	0.18003	1	21819	21819		20.871	0	1	282300			15446	5110	10142	10255	20985	20985					0.1629727513875423
PLLLHALLL	9	Unmodified	_PLLLHALLL_					0	0	0		ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8392028808594	2	501.839146	1001.66374	0.26122	0.00013109	0.073788	3.703E-05	0.33501	0.00016812	501.8391058040293	87.64	1.2292	87.67	87.428	88.657	0.030037					61	46	3	0	0	0	0.23437	1	21646	21646		14.582	0	1	272810			15447	5110	10142	10255	20986	20986					0.1629727513875423
PLLLLLLLL	9	Unmodified	_PLLLLLLLL_					0	0	0		ENSG00000169174|ENST00000302118|PCSK9;ENSG00000185245|ENST00000329125|GP1BA;ENSG00000143126|ENST00000271332|CELSR2;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000121316|ENST00000240617|PLBD1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000162337|ENST00000294304|LRP5;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000167925|ENST00000587427|GHDC;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000167925|Q8N2G8-3|GHDC;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;ENSG00000070031|ENST00000176195|SCT;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000109255|ENST00000264218|NMU;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000184709|ENST00000371542|LRRC26;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000167925|Q8N2G8-2|GHDC;ENSG00000215644|ENST00000400723|GCGR;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000228789|E2RYF7|HCG22	REV__GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000242866|ENST00000450892|STRC;REV__ENSG00000143126|ENST00000271332|CELSR2;ENSG00000185033|ENST00000411539|SEMA4B;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000087116|O95450-2|ADAMTS2;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000228789|E2RYF7|HCG22	ENSG00000242866|ENST00000450892|STRC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.87451171875	2	510.875197	1019.73584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.27	1	116.29	115.79	116.79	0.013062								0	0	0	0.29525	1	29511	29511		0	0	1			+	15448	5657;9450;10136;5659;3403;5006;7917;3577;8279;11067;3158;7608	10143	10256	20987	20987					0.22676189492460708
PLLLLLLLRVP	11	Unmodified	_PLLLLLLLRVP_					0	0	0		nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000101955|ENST00000378533|SRPX	nc|ENSG00000101955|P78539-4|SRPX	nc|ENSG00000101955|P78539-4|SRPX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.4423217773438	2	630.444309	1258.87407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.31	1	115.33	114.83	115.83	0.013092								0	0	0	0.34212	1	29319	29319		0	0	1				15449	1282	10144	10257	20988	20988					0.2549831274091048
PLLLWPLPF	9	Unmodified	_PLLLWPLPF_					0	0	0		ENST00000334370.8_1_19:42840288-42840357:+|nuORF	ENST00000334370.8_1_19:42840288-42840357:+|nuORF	ENST00000334370.8_1_19:42840288-42840357:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3335571289062	2	548.333696	1094.65284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.523	1	96.523	96.023	97.023	0								0	0	0	0.29233	1	24490	24490		0.6015	0	1				15450	6068	10145	10258	20989	20989					0.1092987276445001
PLLNNNLEPC	10	Unmodified	_PLLNNNLEPC_					0	0	0		JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant;nc|ENSG00000152409|Q8N9B5-2|JMY;ENSG00000152409|ENST00000396137|JMY	JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant	JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3370971679688	2	563.781699	1125.54884	0.28932	0.00016311	-2.6582	-0.0014986	-2.3688	-0.0013355	564.2814362658025	51.567	0.15437	51.637	51.556	51.71	0.069878					7	5	2	0	0	0	0.31667	1	10665	10665		7.9102	0	1	42451			15451	3495	10146	10259	20990	20990					-0.008908221253705051
PLLPYIVNI	9	Unmodified	_PLLPYIVNI_					0	0	0		ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.3020629882812	2	521.320786	1040.62702	0.23889	0.00012454	-0.021004	-1.095E-05	0.21789	0.00011359	521.3207672582449	94.605	0.31837	94.643	94.523	94.841	0.038086					16	12	2	0	0	0	0.25845	1	23729	23729		2.0598	2.0598	1	54640			15452	942	10147	10260	20991	20991					0.10832978522171288
PLLQRRQRL	9	Unmodified	_PLLQRRQRL_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.3753662109375	2	590.375281	1178.73601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.94	1	102.94	102.44	103.44	0								0	0	0	0.2927	1	26440	26440		0.52476	0	1				15453	5732	10148	10261	20992	20992					0.15379002265035524
PLLRRCYG	8	Unmodified	_PLLRRCYG_					0	0	0			REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D	REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.271728515625	2	489.271104	976.527655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.036	1	74.084	73.584	74.584	0.048546								0	0	0	0.38822	1	17484	17484		6.3541	0	1		+		15454	9909	10149	10262	20993	20993					0.03845257356431375
PLLSTRETF	9	Unmodified	_PLLSTRETF_					0	0	0		ENST00000374767.4_1_9:107509978-107510098:+|nuORF	ENST00000374767.4_1_9:107509978-107510098:+|nuORF	ENST00000374767.4_1_9:107509978-107510098:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2821044921875	2	532.292756	1062.57096	0.3786	0.00020152	2.4724	0.001316	2.851	0.0015176	532.2926577086647	59.8	0.33652	59.8	59.68	60.017	0					19	12	2	0	0	0	0.20367	2	13283	13276;13283		18.135	1.8676	1	92662			15455	6236	10150	10263	20994;20995	20995					0.042177256146942455
PLLSTRETF	9	Unmodified	_PLLSTRETF_					0	0	0		ENST00000374767.4_1_9:107509978-107510098:+|nuORF	ENST00000374767.4_1_9:107509978-107510098:+|nuORF	ENST00000374767.4_1_9:107509978-107510098:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	532.292756	1062.57096	0.32098	0.00017086	2.4149	0.0012854	2.7359	0.0014563	532.7965588293098	59.654	0.23642	59.726	59.675	59.911	0.072342	-0.036609	-3.1201E-05	NaN	18.135	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150660			15456	6236	10150	10263							0.042177256146942455
PLMELPLMI	9	Unmodified	_PLMELPLMI_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2918701171875	2	528.795232	1055.57591	0.57792	0.0003056	2.4139	0.0012765	2.9919	0.0015821	529.2993981671199	98.108	0.065948	98.108	98.071	98.137	0					6	3	2	0	0	0	0.25875	1	24965	24965		1.8442	1.0506	1	36769			15457	4215	10151	10264	20996	20996					0.05034570161456031
PLMHIEGF	8	Unmodified	_PLMHIEGF_					0	0	0		ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2477722167969	2	472.238938	942.463324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.776	1	57.776	57.276	58.276	0								0	0	0	0.385	1	12684	12684		19.439	0	1				15458	7058	10152	10265	20997	20997					-0.010209425203584033
PLMRTRRF	8	Unmodified	_PLMRTRRF_					0	0	0			REV__ENSG00000100294|ENST00000290429|MCAT	REV__ENSG00000100294|ENST00000290429|MCAT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2864990234375	2	538.810928	1075.6073	0.31257	0.00016842	-0.86374	-0.00046539	-0.55116	-0.00029697	538.8104989120278	72.538	0.49809	72.593	72.43	72.928	0.055939					32	16	3	0	0	0	0.3576	1	17125	17125		6.3541	6.3541	1	171330	+		15459	8379	10153	10266	20998	20998					0.07252324030423551
PLMRTRRF	8	Unmodified	_PLMRTRRF_					0	0	0			REV__ENSG00000100294|ENST00000290429|MCAT	REV__ENSG00000100294|ENST00000290429|MCAT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	538.810928	1075.6073	0.043099	2.3222E-05	-0.62721	-0.00033795	-0.58411	-0.00031473	538.8106883099241	72.61	0.47394	72.61	72.409	72.883	0	0.0080763	0.00010525	NaN	6.3541	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194940	+		15460	8379	10153	10266							0.07252324030423551
PLNEQQEL	8	Unmodified	_PLNEQQEL_					0	0	0			REV__ENST00000394456.9_1_19:6389571-6391922:-|nuORF	REV__ENST00000394456.9_1_19:6389571-6391922:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2344970703125	2	485.745639	969.476725	-0.095484	-4.6381E-05	-0.085738	-4.1647E-05	-0.18122	-8.8028E-05	485.74556813852206	39.06	0.54335	39.06	38.89	39.433	0					42	19	3	0	0	0	0.4433	1	7046	7046		20.454	8.8133	1	110220	+		15461	11713	10154	10267	20999	20999					-0.009234132074197987
PLNEQQEL	8	Unmodified	_PLNEQQEL_					0	0	0			REV__ENST00000394456.9_1_19:6389571-6391922:-|nuORF	REV__ENST00000394456.9_1_19:6389571-6391922:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2342529296875	2	485.745639	969.476725	0.0028657	1.392E-06	-0.023787	-1.1554E-05	-0.020921	-1.0162E-05	485.74562888192145	38.974	0.52747	39.061	38.885	39.412	0.08688					37	20	2	0	0	0	0.4433	1	6883	6883		20.454	9.6297	1	81338	+		15462	11713	10154	10267	21000	21000					-0.009234132074197987
PLNGVQCKRYN	11	Unmodified	_PLNGVQCKRYN_					0	0	0			REV__ENST00000272163.8_1_1:225611740-225615706:-|nuORF	REV__ENST00000272163.8_1_1:225611740-225615706:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	430.5568542480469	3	431.22404	1290.65029	0.088418	3.8128E-05	2.9151	0.001257	3.0035	0.0012952	431.22550180849544	60.711	0.71743	60.784	60.578	61.296	0.073421					42	24	3	0	0	0	0.31089	1	13417	13417		2.6312	1.4164	1	234790	+		15463	11275	10155	10268	21001	21001					0.016590492972227366
PLNVDLVL	8	Unmodified	_PLNVDLVL_					0	0	0			REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF	REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.7685241699219	2	441.768386	881.522219	0.95048	0.00041989	-0.37451	-0.00016545	0.57597	0.00025444	441.76823492285337	81.128	1.4162	81.128	80.813	82.229	0					120	48	5	0	0	0	0.11372	4	19846	19750;19799;19846;19899		52.268	0	1	6441300	+		15464	11781	10156	10269	21002;21003;21004;21005	21004					0.07671857045602337
PLNVDLVL	8	Unmodified	_PLNVDLVL_					0	0	0			REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF	REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.7688903808594	2	441.768386	881.522219	0.43669	0.00019292	0.16557	7.3143E-05	0.60226	0.00026606	441.7685022648654	81.07	1.4037	81.093	80.82	82.223	0.023605					130	49	5	0	0	0	0.23148	4	19637	19590;19637;19682;19800		39.957	0	1	7997400	+		15465	11781	10156	10269	21006;21007;21008;21009	21007					0.07671857045602337
PLPAKLAL	8	Unmodified	_PLPAKLAL_					0	0	0		nc|ENSG00000131183|Q06495-2|SLC34A1;ENSG00000131183|ENST00000324417|SLC34A1	nc|ENSG00000131183|Q06495-2|SLC34A1	nc|ENSG00000131183|Q06495-2|SLC34A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.7749938964844	2	411.776014	821.537475	0.14176	5.8374E-05	-3.027	-0.0012465	-2.8853	-0.0011881	411.7747160774319	109.58	0.18719	109.58	109.47	109.66	0					39	15	5	0	0	0	0.54081	1	28194	28194		0.79363	0	1	3618700			15466	2517	10157	10270	21010	21010					0.11956768633444881
PLPAKLAL	8	Unmodified	_PLPAKLAL_					0	0	0		nc|ENSG00000131183|Q06495-2|SLC34A1;ENSG00000131183|ENST00000324417|SLC34A1	nc|ENSG00000131183|Q06495-2|SLC34A1	nc|ENSG00000131183|Q06495-2|SLC34A1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	411.776014	821.537475	0.090481	3.7258E-05	-2.5238	-0.0010392	-2.4333	-0.001002	411.77486877683117	109.59	0.17519	109.6	109.5	109.67	0.017349	0.010835	0.0001174	NaN	0.79363	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3211500			15467	2517	10157	10270							0.11956768633444881
PLPEGWEI	8	Unmodified	_PLPEGWEI_					0	0	0		nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1;ENST00000466609.1_1_3:98377983-98378526:+|nuORF;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant	nc|ENSG00000123124|Q9H0M0-6|WWP1	nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7424621582031	2	470.742368	939.470183	-0.09818	-4.6218E-05	0.14146	6.6589E-05	0.043275	2.0371E-05	470.74229717182607	72	1.2446	72	71.502	72.747	0					102	43	3	0	0	0	0.46914	2	16917	16917;17131		16.942	0	1	665400			15468	2206	10158	10271	21011;21012	21011					-0.0019730636815893376
PLPEGWEI	8	Unmodified	_PLPEGWEI_					0	0	0		nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1;ENST00000466609.1_1_3:98377983-98378526:+|nuORF;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant	nc|ENSG00000123124|Q9H0M0-6|WWP1	nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7421875	2	470.742368	939.470183	-0.10274	-4.8365E-05	0.16423	7.7309E-05	0.061487	2.8944E-05	470.7423062081859	71.909	1.2067	71.965	71.54	72.746	0.055939					101	42	3	0	0	0	0.46914	3	16948	16904;16948;17027		16.942	0	1	611890			15469	2206	10158	10271	21013;21014;21015	21014					-0.0019730636815893376
PLPEPSWAF	9	Unmodified	_PLPEPSWAF_					0	0	0			REV__ENST00000565367.5_1_15:55611435-55622003:+|nuORF	REV__ENST00000565367.5_1_15:55611435-55622003:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.750732421875	2	522.263468	1042.51238	0.40405	0.00021102	-2.8975	-0.0015133	-2.4934	-0.0013022	522.2617052864823	55.865	0.22802	55.865	55.72	55.948	0					10	7	2	0	0	0	0.22289	1	12093	12093		18.135	7.0205	1	41612	+		15470	12498	10159	10272	21016	21016					-0.0071733095976469485
PLPFPQAED	9	Unmodified	_PLPFPQAED_					0	0	0			REV__ENSG00000162676|ENST00000294702|GFI1	REV__ENSG00000162676|ENST00000294702|GFI1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8238830566406	2	507.250557	1012.48656	0.15592	7.9089E-05	1.2834	0.00065099	1.4393	0.00073008	507.7527503874436	60.154	0.55934	60.226	60.044	60.604	0.07246					35	19	3	0	0	0	0.24263	1	13328	13328		12.532	0.89125	1	90875	+		15471	9898	10160	10273	21017	21017					-0.019182252020527812
PLPLHPWC	8	Unmodified	_PLPLHPWC_					0	0	0			REV__ENST00000376888.6_1_6:29625018-29635699:+|nuORF	REV__ENST00000376888.6_1_6:29625018-29635699:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.74884033203125	2	481.749473	961.484393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.903	1	25.995	25.495	26.495	0.091507								0	0	0	0.38822	1	2980	2980		0.79363	0	1		+		15472	11646	10161	10274	21018	21018					0.002110675791413996
PLPLIPITCL	10	Unmodified	_PLPLIPITCL_					0	0	0			REV__ENST00000263980.7_1_1:27480949-27481393:-|nuORF	REV__ENST00000263980.7_1_1:27480949-27481393:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.25634765625	2	540.330296	1078.64604	0.80791	0.00043654	-0.6726	-0.00036343	0.1353	7.3109E-05	540.8313097297242	81.589	0.6911	81.589	81.374	82.066	0					36	23	2	0	0	0	0.31712	1	20075	20075		3.5965	1.5367	1	78360	+		15473	11247	10162	10275	21019	21019					0.1098619182157563
PLPPGGHLPLL	11	Unmodified	_PLPPGGHLPLL_					0	0	0			REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF	REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8369140625	2	555.837134	1109.65972	0.7743	0.00043038	-0.69906	-0.00038856	0.07524	4.1821E-05	555.8365513244207	83.791	0.54644	83.791	83.608	84.154	0					31	18	3	0	0	0	0.2111	1	20624	20624		28.487	14.581	1	160890	+		15474	11599	10163	10276	21020	21020					0.10927185645050486
PLPPGGHLPLL	11	Unmodified	_PLPPGGHLPLL_					0	0	0			REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF	REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2507934570312	2	555.837134	1109.65972	0.7743	0.00043038	-0.69906	-0.00038856	0.07524	4.1821E-05	555.8365513244207	83.791	0.54644	83.791	83.608	84.154	0					31	18	3	0	0	0	0.30738	1	20639	20639		15.847	5.7733	1	160890	+		15475	11599	10163	10276	21021	21021					0.10927185645050486
PLPPGGHLPLL	11	Unmodified	_PLPPGGHLPLL_					0	0	0			REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF	REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8369750976562	2	555.837134	1109.65972	0.55426	0.00030808	-0.38961	-0.00021656	0.16466	9.1523E-05	555.8367384733501	83.799	0.52647	83.82	83.641	84.168	0.021751					30	18	2	0	0	0	0.2676	1	20473	20473		21.747	11.673	1	171560	+		15476	11599	10163	10276	21022	21022					0.10927185645050486
PLPPLVFQ	8	Unmodified	_PLPPLVFQ_					0	0	0		ENST00000311637.9_2_20:50290694-50290826:-|nuORF	ENST00000311637.9_2_20:50290694-50290826:-|nuORF	ENST00000311637.9_2_20:50290694-50290826:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.2247009277344	2	455.773471	909.53239	0.71276	0.00032486	-0.46232	-0.00021071	0.25044	0.00011415	455.77335758960646	93.068	0.55544	93.068	92.767	93.323	0					24	20	2	0	0	0	0.35759	1	23499	23499		10.183	3.8293	1	65140			15477	6004	10164	10277	21023	21023					0.07400464770853432
PLPSVLLV	8	Unmodified	_PLPSVLLV_					0	0	0		ENST00000580676.1_1_17:26905378-26905687:-|nuORF	ENST00000580676.1_1_17:26905378-26905687:-|nuORF	ENST00000580676.1_1_17:26905378-26905687:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.80059814453125	2	419.275847	836.537141	0.12864	5.3935E-05	0.20175	8.4588E-05	0.33038	0.00013852	419.27642111514115	112.82	0.094673	112.82	112.79	112.89	0					18	12	2	0	0	0	0.3576	1	28921	28921		0	0	1	160300			15478	7216	10165	10278	21024	21024					0.11233348913629015
PLPVKSIVL	9	Unmodified	_PLPVKSIVL_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.32305908203125	2	483.323328	964.632104	0.094559	4.5702E-05	-0.33342	-0.00016115	-0.23886	-0.00011545	483.3232487558462	94.105	0.47935	94.143	94.043	94.523	0.038086					29	19	2	0	0	0	0.26684	1	23640	23640		10.824	2.9138	1	94246			15479	2292	10166	10279	21025	21025					0.1483728238479216
PLQHEVRS	8	Unmodified	_PLQHEVRS_					0	0	0			REV__ENST00000368194.7_1_1:157014260-157014320:-|nuORF	REV__ENST00000368194.7_1_1:157014260-157014320:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2618408203125	2	483.261791	964.509028	-0.30069	-0.00014531	0.15648	7.5622E-05	-0.14421	-6.9689E-05	483.26187415574174	24.843	1.7161	24.939	24.637	26.353	0.096075					322	147	4	0	0	0	0.54097	1	3072	3072		0.69038	0	1	1168800	+		15480	11572	10167	10280	21026	21026					0.025354189862468957
PLQLLTQHYH	10	Unmodified	_PLQLLTQHYH_					0	0	0			REV__ENST00000543879.6_1_15:35148995-35166226:-|nuORF	REV__ENST00000543879.6_1_15:35148995-35166226:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3382568359375	2	625.33803	1248.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.3	1	15.3	14.8	15.8	0								0	0	0	0.33984	1	521	521		0.40072	0	1		+		15481	8001	10168	10281	21027	21027					0.047121946629886224
PLQQKKSIS	9	Unmodified	_PLQQKKSIS_					0	0	0		ENST00000548252.1_1_12:95451549-95452129:-|nuORF	ENST00000548252.1_1_12:95451549-95452129:-|nuORF	ENST00000548252.1_1_12:95451549-95452129:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.808349609375	2	514.808574	1027.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.344	1	24.344	23.844	24.844	0								0	0	0	0.29303	1	2658	2658		0.45834	0.45834	1				15482	7084	10169	10282	21028	21028					0.0898971836866167
PLQQSQLPL	9	Unmodified	_PLQQSQLPL_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2950439453125	2	512.295299	1022.57605	0.0066317	3.3974E-06	0.094488	4.8406E-05	0.10112	5.1803E-05	512.2952341314243	34.013	0.48964	34.013	33.828	34.317	0					31	18	2	0	0	0	0.30757	1	5481	5481		5.7319	0	1	62006	+		15483	8370	10170	10283	21029	21029					0.06566029477335178
PLQQSQLPL	9	Unmodified	_PLQQSQLPL_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.295299	1022.57605	0.0066317	3.3974E-06	0.094488	4.8406E-05	0.10112	5.1803E-05	512.2952341314243	34.013	0.48964	34.013	33.828	34.317	0	0.014868	-4.7225E-05	NaN	5.7319	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62006	+		15484	8370	10170	10283							0.06566029477335178
PLQQSQLPL	9	Unmodified	_PLQQSQLPL_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.295299	1022.57605	0.045855	2.3491E-05	0.18312	9.3811E-05	0.22897	0.0001173	512.2952267471586	33.907	0.50803	33.983	33.828	34.336	0.076248	-0.014868	4.3584E-05	NaN	5.7319	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55199	+		15485	8370	10170	10283							0.06566029477335178
PLRRLRAQN	9	Unmodified	_PLRRLRAQN_					0	0	0			REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF	REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.3428344726562	2	562.343981	1122.67341	0.7173	0.00040337	-0.62632	-0.00035221	0.090983	5.1164E-05	562.3435590437492	84.166	0.33395	84.166	83.931	84.265	0					17	11	2	0	0	0	0.3354	1	20722	20722		2.0598	0	1	174070	+		15486	11613	10171	10284	21030	21030					0.11697856196838075
PLRWEEKF	8	Unmodified	_PLRWEEKF_					0	0	0			REV__ENST00000593003.5_1_19:9646979-9648992:-|nuORF	REV__ENST00000593003.5_1_19:9646979-9648992:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7969970703125	2	552.795466	1103.57638	0.31315	0.00017311	0.50792	0.00028077	0.82107	0.00045388	552.7958735260538	49.827	0.55871	49.827	49.621	50.18	0					30	19	2	0	0	0	0.4433	1	10262	10262		20.454	1.0917	1	135610	+		15487	12592	10172	10285	21031	21031					0.028734491971817988
PLSFCGPQKLN	11	Unmodified	_PLSFCGPQKLN_					0	0	0		ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.87823486328125	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.568	1	31.642	31.142	32.142	0.073782								0	0	0	0.33873	1	4641	4641		0.40827	0	1				15488	5595	10173	10286	21032	21032					0.01857743662685607
PLSGGRKH	8	Unmodified	_PLSGGRKH_					0	0	0			REV__ENST00000493940.2_1_1:22177888-22181121:-|nuORF	REV__ENST00000493940.2_1_1:22177888-22181121:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.24615478515625	2	426.245944	850.477334	0.84693	0.000361	-0.66303	-0.00028262	0.1839	7.8386E-05	426.24566666609417	79.857	0.55022	79.857	79.59	80.14	0					31	18	2	0	0	0	0.53771	1	19426	19426		2.8892	0	1	119180	+		15489	9443	10174	10287	21033	21033					0.0461147102294035
PLSGGRKH	8	Unmodified	_PLSGGRKH_					0	0	0			REV__ENST00000493940.2_1_1:22177888-22181121:-|nuORF	REV__ENST00000493940.2_1_1:22177888-22181121:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	426.245944	850.477334	0.84693	0.000361	-0.66303	-0.00028262	0.1839	7.8386E-05	426.24566666609417	79.857	0.55022	79.857	79.59	80.14	0	0.010193	-0.00015922	NaN	2.8892	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119180	+		15490	9443	10174	10287							0.0461147102294035
PLSKLHAN	8	Unmodified	_PLSKLHAN_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.2554626464844	2	440.255977	878.497401	0.348	0.00015321	-1.5514	-0.00068301	-1.2034	-0.0005298	440.2553448803108	56.579	0.96636	56.579	56.3	57.267	0					47	35	2	0	0	0	0.53771	1	12424	12424		2.8892	0	1	139060			15491	3254	10175	10288	21034	21034					0.053292219628815474
PLSKLHAN	8	Unmodified	_PLSKLHAN_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.25518798828125	2	440.255977	878.497401	0.11159	4.9128E-05	-1.393	-0.00061327	-1.2814	-0.00056414	440.2553790150522	56.58	0.75651	56.646	56.234	56.991	0.066448					43	27	2	0	0	0	0.53771	2	12170	12170;12258		2.8892	0	1	95382			15492	3254	10175	10288	21035;21036	21035					0.053292219628815474
PLSLCPIRRL	10	Unmodified	_PLSLCPIRRL_					0	0	0		ENST00000504875.5_1_5:149433032-149433299:-|nuORF	ENST00000504875.5_1_5:149433032-149433299:-|nuORF	ENST00000504875.5_1_5:149433032-149433299:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3565673828125	2	584.355168	1166.69578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.948	1	86.948	86.448	87.448	0								0	0	0	0.33215	1	21579	21579		9.3831	2.0939	1				15493	6882	10176	10289	21037	21037					0.1191031955024755
PLSLNRHF	8	Unmodified	_PLSLNRHF_					0	0	0		HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|14|3|sense	HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|14|3|sense	HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|14|3|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7958984375	2	492.274701	982.534849	-0.065595	-3.2291E-05	-0.72844	-0.00035859	-0.79403	-0.00039088	492.2743288136297	43.497	0.4528	43.497	43.296	43.748	0					34	16	3	0	0	0	0.3576	1	8380	8380		4.756	2.1785	1	87989			15494	7350	10177	10290	21038	21038					0.04288313228516927
PLSPSSDLQ	9	Unmodified	_PLSPSSDLQ_					0	0	0			REV__nc|ENSG00000138606|Q7M4L6|SHF	REV__nc|ENSG00000138606|Q7M4L6|SHF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.24041748046875	2	472.24019	942.465826	0.16277	7.6866E-05	0.065678	3.1016E-05	0.22845	0.00010788	472.24014293467656	59.881	0.82675	59.881	59.656	60.483	0					64	30	3	0	0	0	0.03918	1	13289	13289		45.7	1.8413	1	776950	+		15495	9318	10178	10291	21039	21039					-0.007708155817113038
PLSQEELQ	8	Unmodified	_PLSQEELQ_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2399597167969	2	472.24019	942.465826	0.16277	7.6866E-05	0.065678	3.1016E-05	0.22845	0.00010788	472.24014293467656	59.881	0.82675	59.881	59.656	60.483	0					64	30	3	0	0	0	0.40691	1	13384	13384		25.399	0	1	776950			15496	895	10179	10292	21040	21040					-0.007708155817113038
PLSRKHGG	8	Unmodified	_PLSRKHGG_					0	0	0		ENSG00000142168|ENST00000270142|SOD1	ENSG00000142168|ENST00000270142|SOD1	ENSG00000142168|ENST00000270142|SOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.24609375	2	426.245944	850.477334	0.26075	0.00011114	0.14211	6.0572E-05	0.40285	0.00017171	426.2459359721851	79.81	0.62254	79.837	79.599	80.222	0.026436					34	21	2	0	0	0	0.53771	2	19238	19238;19288		2.8892	0	1	123210			15497	3089	10180	10293	21041;21042	21041					0.046114710229517186
PLSSADGDIK	10	Unmodified	_PLSSADGDIK_					0	0	0			REV__ENST00000561743.5_2_16:58054145-58054301:+|nuORF	REV__ENST00000561743.5_2_16:58054145-58054301:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2418212890625	2	501.758746	1001.50294	0.19211	9.6392E-05	-0.63161	-0.00031692	-0.4395	-0.00022053	502.25994012563547	38.836	0.5952	38.836	38.567	39.162	0					49	22	3	0	0	0	0.44246	1	6876	6876		6.2058	0.44535	1	46505	+		15498	12485	10181	10294	21043	21043					0.002248559640520398
PLTAVLELLK	10	Unmodified	_PLTAVLELLK_					0	0	0			REV__ENST00000495210.1_1_1:222817751-222823660:+|nuORF	REV__ENST00000495210.1_1_1:222817751-222823660:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.8524169921875	2	548.85245	1095.69035	0.35802	0.0001965	-0.78386	-0.00043023	-0.42584	-0.00023372	548.8520082211896	109.43	0.30211	109.45	109.23	109.53	0.019402					46	36	2	0	0	0	0.46746	1	27966	27966		1.4819	0	1	556810	+		15499	12177	10182	10295	21044	21044					0.1463291923939778
PLTEKLHVE	9	Unmodified	_PLTEKLHVE_					0	0	0			REV__ENST00000493455.6_1_22:26840650-26860128:-|nuORF	REV__ENST00000493455.6_1_22:26840650-26860128:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7705688476562	2	533.300581	1064.58661	0.7191	0.0003835	1.3321	0.00071038	2.0512	0.0010939	533.301260727362	92.543	0.11816	92.58	92.524	92.643	0.03653					5	3	2	0	0	0	0.25051	1	23118	23118		7.9102	0	1	29592	+		15500	8367	10183	10296	21045	21045					0.05690012131753974
PLTLFLTRP	9	Unmodified	_PLTLFLTRP_					0	0	0			REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.286865234375	2	529.32386	1056.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.333	1	99.333	98.833	99.833	0								0	0	0	0.28724	1	25342	25342		1.6526	0	1		+		15501	8650	10184	10297	21046	21046					0.10711496753697247
PLTRILKL	8	Unmodified	_PLTRILKL_					0	0	0		ENSG00000198774|ENST00000361228|RASSF9	ENSG00000198774|ENST00000361228|RASSF9	ENSG00000198774|ENST00000361228|RASSF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.3288269042969	2	477.328945	952.643337	0.18834	8.9898E-05	-0.15396	-7.349E-05	0.034376	1.6409E-05	477.3287958952379	82.758	0.5171	82.758	82.534	83.051	0					29	17	2	0	0	0	0.53817	1	20280	20280		2.5775	0	1	99575			15502	5402	10185	10298	21047	21047					0.16512104478943002
PLTSFLTPY	9	Unmodified	_PLTSFLTPY_					0	0	0		ENST00000375151.4_1_X:54471406-54471697:+|nuORF	ENST00000375151.4_1_X:54471406-54471697:+|nuORF	ENST00000375151.4_1_X:54471406-54471697:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.2872314453125	2	519.778951	1037.54335	0.44962	0.0002337	0.249	0.00012943	0.69862	0.00036313	519.7789468798439	92.301	0.72951	92.337	92.018	92.748	0.03653					54	25	3	0	0	0	0.2491	1	22972	22972		8.5933	1.8701	1	226550			15503	6240	10186	10299	21048	21048					0.026078223544800494
PLTSTSRHF	9	Unmodified	_PLTSTSRHF_					0	0	0		ENST00000575300.1_1_16:4312060-4322792:-|nuORF	ENST00000575300.1_1_16:4312060-4322792:-|nuORF	ENST00000575300.1_1_16:4312060-4322792:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2654418945312	2	523.274898	1044.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.531	1	35.531	35.031	36.031	0								0	0	0	0.25361	1	5946	5946		8.5933	1.8701	1				15504	7202	10187	10300	21049	21049					0.014756881577113745
PLTTEPHSPTP	11	Unmodified	_PLTTEPHSPTP_					0	0	0			REV__ENSG00000184956|ENST00000421673|MUC6	REV__ENSG00000184956|ENST00000421673|MUC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.298828125	2	588.798403	1175.58225	0.49298	0.00029027	-0.14604	-8.5988E-05	0.34695	0.00020428	589.2990914536414	83.696	0.78056	83.718	83.361	84.142	0.021744					68	27	4	0	0	0	0.24779	1	20438	20438		24.021	3.5669	1	383300	+		15505	10648	10188	10301	21050	21050					0.0014850291818220285
PLTTFQDQLN	10	Unmodified	_PLTTFQDQLN_					0	0	0		ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8011474609375	2	588.798403	1175.58225	0.71301	0.00041982	-0.23701	-0.00013955	0.47601	0.00028027	589.2988909878288	83.682	0.65368	83.682	83.425	84.079	0					47	21	3	0	0	0	0.28643	1	20577	20577		24.021	6.9077	1	296210			15506	1028	10189	10302	21051	21051					0.0014850291820494022
PLTTFQDQLN	10	Unmodified	_PLTTFQDQLN_					0	0	0		ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.801025390625	2	588.798403	1175.58225	0.49298	0.00029027	-0.14604	-8.5988E-05	0.34695	0.00020428	589.2990914536414	83.696	0.78056	83.718	83.361	84.142	0.021744					68	27	4	0	0	0	0.37232	1	20397	20397		14.838	2.3067	1	383300			15507	1028	10189	10302	21052	21052					0.0014850291820494022
PLTTNPNEPLA	11	Unmodified	_PLTTNPNEPLA_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8244018554688	2	583.806228	1165.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.89	1	54.89	54.39	55.39	0								0	0	0	0.30512	1	11804	11804		13.042	1.5478	1		+		15508	10945	10190	10303	21053	21053					0.02172789435235245
PLTVIDMEF	9	Unmodified	_PLTVIDMEF_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7857666015625	2	532.770268	1063.52598	0.60169	0.00032056	0.15899	8.4707E-05	0.76068	0.00040527	532.7702076773317	92.542	1.2426	92.542	91.763	93.006	0					111	46	3	0	0	0	0.28587	1	23170	23170		8.5933	0	1	159930			15509	1745	10191	10304	21054	21054					-0.0032384124283453275
PLVFVSVP	8	Unmodified	_PLVFVSVP_					0	0	0		chr3:42786964-42794157|140|11.28|0.0|20.11|-|0|None,HIGD1A|1	chr3:42786964-42794157|140|11.28|0.0|20.11|-|0|None,HIGD1A|1	chr3:42786964-42794157|140|11.28|0.0|20.11|-|0|None,HIGD1A|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	429.7915954589844	2	429.260197	856.50584	0.1265	5.4302E-05	1.5235	0.000654	1.6501	0.0007083	429.260802880647	112.47	0.68839	112.49	112.32	113	0.014595					107	77	2	0	0	0	0.3576	1	28675	28675		5.7604	3.1829	1	789640			15510	167	10192	10305	21055	21055					0.07184775879522931
PLVFVSVP	8	Unmodified	_PLVFVSVP_					0	0	0		chr3:42786964-42794157|140|11.28|0.0|20.11|-|0|None,HIGD1A|1	chr3:42786964-42794157|140|11.28|0.0|20.11|-|0|None,HIGD1A|1	chr3:42786964-42794157|140|11.28|0.0|20.11|-|0|None,HIGD1A|1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	429.260197	856.50584	0.11057	4.7465E-05	1.7237	0.00073991	1.8343	0.00078737	429.26077462810355	112.47	0.71947	112.47	112.3	113.02	0	-0.0082927	4.6683E-05	NaN	5.7604	122	79	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129800			15511	167	10192	10305							0.07184775879522931
PLVGEYLLF	9	Unmodified	_PLVGEYLLF_					0	0	0		nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7805786132812	2	525.797143	1049.57973	0.49802	0.00026186	-0.32621	-0.00017152	0.17181	9.0338E-05	525.7968655923357	83.466	0.78967	83.466	83.2	83.99	0					68	26	3	0	0	0	0.28587	1	20647	20647		8.5933	0	1	645000			15512	3327	10193	10306	21056	21056					0.056926992511762364
PLVLQKFF	8	Unmodified	_PLVLQKFF_					0	0	0		nc|ENSG00000088756|Q9P2N2-3|ARHGAP28;nc|ENSG00000088756|Q9P2N2-5|ARHGAP28;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28	nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.3042297363281	2	496.302396	990.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.992	1	79.023	78.523	79.523	0.030159								0	0	0	0.38822	1	18996	18996		5.7604	0	1				15513	1013	10194	10307	21057	21057					0.09456726696282658
PLVTFVYVF	9	Unmodified	_PLVTFVYVF_					0	0	0		nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8	nc|ENSG00000092068|Q9UHI5-3|SLC7A8	nc|ENSG00000092068|Q9UHI5-3|SLC7A8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7911376953125	2	542.807511	1083.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.005	1	80.005	79.505	80.505	0								0	0	0	0.11877	1	19465	19465		30.225	0	1				15514	1072	10195	10308	21058	21058					0.06201289630848805
PLVTFVYVF	9	Unmodified	_PLVTFVYVF_					0	0	0		nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8	nc|ENSG00000092068|Q9UHI5-3|SLC7A8	nc|ENSG00000092068|Q9UHI5-3|SLC7A8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.791259765625	2	542.807511	1083.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.056	1	82.056	81.556	82.556	0								0	0	0	0.11877	1	20089	20089		30.225	5.5509	1				15515	1072	10195	10308	21059	21059					0.06201289630848805
PLVVIHELF	9	Unmodified	_PLVVIHELF_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;nc|ENSG00000100084|P54198-2|HIRA	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2942504882812	2	533.81841	1065.62227	0.50973	0.0002721	-0.255	-0.00013613	0.25473	0.00013598	533.8187881854689	82.371	0.28286	82.392	82.221	82.504	0.021751					15	10	2	0	0	0	0.25416	1	20029	20029		5.2307	0	1	84269			15516	1156	10196	10309	21060	21060					0.09208094379414433
PLVWAKLKGFP	11	Unmodified	_PLVWAKLKGFP_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.2689819335938	2	628.381709	1254.74886	0.32564	0.00020463	0.65724	0.000413	0.98288	0.00061762	628.3826221504844	88.125	1.474	88.155	87.458	88.932	0.030037					117	56	3	0	0	0	0.31094	1	21758	21758		1.3295	1.3295	1	362640			15517	1230	10197	10310	21061	21061					0.1316802060455302
PLVWAKLKGFP	11	Unmodified	_PLVWAKLKGFP_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	628.381709	1254.74886	0.30222	0.00018991	0.88567	0.00055654	1.1879	0.00074645	628.3825015420477	87.842	1.3624	87.842	87.455	88.817	0	-0.15691	0.00012597	NaN	0.30703	76	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729130			15518	1230	10197	10310							0.1316802060455302
PLWEYVAI	8	Unmodified	_PLWEYVAI_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.768798828125	2	495.768386	989.522219	0.65874	0.00032658	-0.18751	-9.2959E-05	0.47124	0.00023362	495.76822566927444	85.413	0.61611	85.413	85.189	85.806	0					57	26	3	0	0	0	0.45077	1	21134	21134		19.439	4.6007	1	348390	+		15519	9291	10198	10311	21062	21062					0.027038570456056732
PLWGPGGPE	9	Unmodified	_PLWGPGGPE_					0	0	0			REV__nc|ENSG00000137834|O43541-4|SMAD6	REV__nc|ENSG00000137834|O43541-4|SMAD6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.22540283203125	2	455.226885	908.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.324	1	93.324	92.824	93.824	0								0	0	0	0.25361	1	23515	23515		8.5933	0	1		+		15520	9289	10199	10312	21063	21063					-0.018664596823668944
PLWLSDHL	8	Unmodified	_PLWLSDHL_					0	0	0		ENST00000323798.7_1_19:49490451-49490544:-|nuORF	ENST00000323798.7_1_19:49490451-49490544:-|nuORF	ENST00000323798.7_1_19:49490451-49490544:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7742919921875	2	490.763635	979.512717	0.49785	0.00024433	-0.094337	-4.6297E-05	0.40351	0.00019803	490.7635651336943	55.275	0.7281	55.275	55.085	55.813	0					49	25	3	0	0	0	0.44023	1	11959	11959		20.871	0.41758	1	349050			15521	6039	10200	10313	21064	21064					0.022140887600926362
PLWLSDHL	8	Unmodified	_PLWLSDHL_					0	0	0		ENST00000323798.7_1_19:49490451-49490544:-|nuORF	ENST00000323798.7_1_19:49490451-49490544:-|nuORF	ENST00000323798.7_1_19:49490451-49490544:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	490.763635	979.512717	0.49785	0.00024433	-0.094337	-4.6297E-05	0.40351	0.00019803	490.7635651336943	55.275	0.7281	55.275	55.085	55.813	0	-0.0044372	-1.9367E-05	NaN	20.871	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349050			15522	6039	10200	10313							0.022140887600926362
PLWLSDHL	8	Unmodified	_PLWLSDHL_					0	0	0		ENST00000323798.7_1_19:49490451-49490544:-|nuORF	ENST00000323798.7_1_19:49490451-49490544:-|nuORF	ENST00000323798.7_1_19:49490451-49490544:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	490.763635	979.512717	0.44881	0.00022026	-0.045159	-2.2162E-05	0.40365	0.0001981	490.76362077928985	55.219	0.60664	55.284	55.068	55.674	0.065128	0.0044372	2.8902E-05	NaN	20.871	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298890			15523	6039	10200	10313							0.022140887600926362
PLWRRWMRPRM	11	Unmodified	_PLWRRWMRPRM_					0	0	0		ENST00000391992.3_1_12:9181361-9181625:-|nuORF	ENST00000391992.3_1_12:9181361-9181625:-|nuORF	ENST00000391992.3_1_12:9181361-9181625:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7553100585938	3	528.955342	1583.8442	0.27183	0.00014379	3.2654	0.0017272	3.5372	0.001871	529.2915293016864	61.274	0.24469	61.348	61.143	61.388	0.073421					9	7	2	0	0	0	0.311	1	13561	13561		0.50596	0.41111	1	102730			15524	6313	10201	10314	21065	21065					0.07562727252275181
PLYFGDGG	8	Unmodified	_PLYFGDGG_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.1935119628906	2	413.192511	824.370469	0.14308	5.9118E-05	1.3144	0.00054311	1.4575	0.00060223	413.1934573831675	78.777	3.5462	78.807	77.461	81.007	0.030159					362	124	5	0	0	0	0.53771	1	18909	18909		2.8892	2.8892	1	6509300	+		15525	10553	10202	10315	21066	21066					-0.04874123982074252
PLYHAETI	8	Unmodified	_PLYHAETI_					0	0	0		nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2476501464844	2	472.247818	942.481082	-0.031538	-1.4894E-05	-0.013651	-6.4466E-06	-0.045189	-2.134E-05	472.24782823581126	56.734	1.4512	56.734	56.484	57.935	0					145	52	5	0	0	0	0.3056	1	12515	12515		34.187	0	1	4803100			15526	7457	10203	10316	21067	21067					0.007540960061305668
PLYKLFPDA	9	Unmodified	_PLYKLFPDA_					0	0	0			REV__ENSG00000133101|ENST00000255465|CCNA1	REV__ENSG00000133101|ENST00000255465|CCNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2823486328125	2	532.294768	1062.57498	0.32098	0.00017086	-1.3638	-0.00072594	-1.0428	-0.00055508	532.7965588293098	59.654	0.23642	59.726	59.675	59.911	0.072342					13	9	2	0	0	0	0.21398	1	13125	13125		16.942	3.4344	1	150660	+		15527	9140	10204	10317	21068	21068					0.04619815108412695
PLYMAPLP	8	Unmodified	_PLYMAPLP_					0	0	0			REV__ENST00000397501.5_1_8:27316032-27316239:+|nuORF	REV__ENST00000397501.5_1_8:27316032-27316239:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.24713134765625	2	451.246232	900.477911	0.095249	4.2981E-05	3.5393	0.0015971	3.6346	0.0016401	451.24773844584956	36.15	0.44554	36.232	35.966	36.412	0.081715					22	16	2	0	0	0	0.53257	1	6035	6035		6.3541	0	1	25075	+		15528	11733	10205	10318	21069	21069					0.02369129627777511
PLYSDLHPVSL	11	Unmodified	_PLYSDLHPVSL_					0	0	0		ENST00000515519.5_1_5:148442977-148443214:+|nuORF	ENST00000515519.5_1_5:148442977-148443214:+|nuORF	ENST00000515519.5_1_5:148442977-148443214:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.83203125	2	620.832246	1239.64994	0.1159	7.1952E-05	0.40468	0.00025124	0.52057	0.00032319	620.8322425686963	57.616	0.36008	57.616	57.408	57.768	0					22	12	3	0	0	0	0.38555	1	12632	12632		7.609	0	1	116260			15529	6936	10206	10319	21070	21070					0.039699528490018565
PLYSDLHPVSL	11	Unmodified	_PLYSDLHPVSL_					0	0	0		ENST00000515519.5_1_5:148442977-148443214:+|nuORF	ENST00000515519.5_1_5:148442977-148443214:+|nuORF	ENST00000515519.5_1_5:148442977-148443214:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	620.832246	1239.64994	0.092558	5.7463E-05	0.7778	0.00048288	0.87036	0.00054035	620.8325867631869	57.574	0.28673	57.642	57.437	57.724	0.068375	0.013143	0.00030435	NaN	7.609	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96689			15530	6936	10206	10319							0.039699528490018565
PLYSHRRRR	9	Unmodified	_PLYSHRRRR_					0	0	0			REV__ENST00000508256.5_1_4:89205591-89205732:-|nuORF	REV__ENST00000508256.5_1_4:89205591-89205732:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.8582153320312	2	620.860329	1239.70611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.704	1	52.771	52.271	53.271	0.067173								0	0	0	0.2927	1	10999	10999		0.52476	0.066424	1		+		15531	12239	10207	10320	21071	21071					0.09584063319675806
PLYSSSLWGPA	11	Unmodified	_PLYSSSLWGPA_					0	0	0		ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.29833984375	2	589.298039	1176.58152	0.079692	4.6963E-05	0.18885	0.00011129	0.26854	0.00015825	589.2985785876019	39.692	1.097	39.692	39.433	40.53	0					62	39	3	0	0	0	0.41369	1	7281	7281		1.1933	0	1	94837			15532	3125	10208	10321	21072	21072					0.0002970826917589875
PLYTLGTAFL	10	Unmodified	_PLYTLGTAFL_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.77099609375	2	548.307875	1094.6012	0.52507	0.0002879	0.068717	3.7678E-05	0.59378	0.00032558	548.3077154511192	63.269	0.59021	63.269	63.142	63.733	0					37	20	3	0	0	0	0.31456	1	14405	14405		14.838	0	1	248590			15533	4562	10209	10322	21073	21073					0.05768084279907271
PMCVSFFFFL	10	Unmodified	_PMCVSFFFFL_					0	0	0			REV__ENST00000479177.1_1_1:22005912-22007379:-|nuORF	REV__ENST00000479177.1_1_1:22005912-22007379:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.292236328125	2	619.292856	1236.57116	-0.2667	-0.00016517	0.37083	0.00022965	0.10413	6.4488E-05	619.2930146771804	89.835	0.37041	89.835	89.646	90.017	0					39	14	3	0	0	0	0.36288	1	22501	22501		15.847	3.3156	1	312230	+		15534	12072	10210	10323	21074	21074					-0.0376631398128211
PMEKWFIFL	9	Unmodified	_PMEKWFIFL_					0	0	0			REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF	REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2159729003906	3	404.215822	1209.62564	-0.27103	-0.00010956	0.14223	5.7493E-05	-0.1288	-5.2063E-05	404.21585114599037	31.409	0.97876	31.482	31.244	32.223	0.07378					128	45	6	0	0	0	0.34289	1	4801	4801		1.0715	1.0715	1	573490	+		15535	8091	10211	10324	21075	21075					0.029210211617737514
PMERPIAAY	9	Unmodified	_PMERPIAAY_					0	0	0			REV__ENSG00000176903|ENST00000316836|PNMA1	REV__ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.267578125	2	524.268227	1046.5219	-0.50456	-0.00026452	0.6234	0.00032683	0.11884	6.2304E-05	524.2684596759924	41.661	0.44477	41.751	41.573	42.018	0.089764					30	17	3	0	0	0	0.17247	1	7694	7694		21.747	0	1	99274	+		15536	10414	10212	10325	21076	21076					0.000501140541246059
PMHFHSIFLN	10	Unmodified	_PMHFHSIFLN_					0	0	0			REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.5350036621094	3	414.874459	1241.60155	-0.04171	-1.7304E-05	1.7027	0.0007064	1.661	0.00068909	414.87511959947625	35.283	0.62218	35.362	35.169	35.791	0.078831					38	23	2	0	0	0	0.31852	1	5845	5845		0.69767	0.07084	1	66592	+		15537	12427	10213	10326	21077	21077					-0.009588192718865685
PMHSISSAK	9	Unmodified	_PMHSISSAK_					0	0	0			REV__PCSK2|p.E251K|1|0.09|ENSG00000125851|chr20:17436749-17436749|G/A|missense_variant	REV__PCSK2|p.E251K|1|0.09|ENSG00000125851|chr20:17436749-17436749|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2444763183594	2	479.244752	956.474951	-0.21936	-0.00010513	-0.08481	-4.0645E-05	-0.30417	-0.00014577	479.24460958677935	21.957	0.4702	22.058	21.92	22.39	0.10178					72	42	2	0	0	0	0.33849	1	1876	1876		1.6526	0	1	73663	+		15538	12954	10214	10327	21078	21078					-0.005027454970218059
PMTFSEARF	9	Unmodified	_PMTFSEARF_					0	0	0		nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7852783203125	2	543.257859	1084.50117	0.34159	0.00018557	0.7335	0.00039848	1.0751	0.00058405	543.2582523068714	50.908	0.49613	50.978	50.766	51.262	0.069874					26	18	2	0	0	0	0.25644	1	10467	10467		3.9444	0.3479	1	43815			15539	693	10215	10328	21079	21079					-0.037704763255760554
PMWYGVRS	8	Unmodified	_PMWYGVRS_					0	0	0			REV__ENST00000594954.5_1_19:35820289-35820811:+|nuORF	REV__ENST00000594954.5_1_19:35820289-35820811:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.248779296875	2	498.242012	994.469472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.285	1	19.285	18.785	19.785	0								0	0	0	0.38822	1	1321	1321		1.8442	0.36234	1		+		15540	12605	10216	10329	21080	21080					-0.02798424288835122
PMYGGAAF	8	Unmodified	_PMYGGAAF_					0	0	0			REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.1834716796875	2	407.183632	812.352711	0.56076	0.00022833	-0.86931	-0.00035397	-0.30855	-0.00012564	407.1832332232795	91.072	0.48972	91.072	90.808	91.297	0					24	16	2	0	0	0	0.54081	1	22839	22839		0.79363	0	1	222600	+		15541	9783	10217	10330	21081	21081					-0.06097162508604015
PMYGGAAF	8	Unmodified	_PMYGGAAF_					0	0	0			REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	407.183632	812.352711	-0.090595	-3.6889E-05	-0.18368	-7.479E-05	-0.27427	-0.00011168	407.1833810790759	90.996	0.90556	91.031	90.378	91.284	0.035446	-0.020466	0.00047548	NaN	0.79363	40	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278780	+		15542	9783	10217	10330							-0.06097162508604015
PMYMAPEVI	9	Unmodified	_PMYMAPEVI_					0	0	0		ULK1|p.S184F|1|0.21|ENSG00000177169|chr12:131908958-131908958|C/T|missense_variant;ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1	ULK1|p.S184F|1|0.21|ENSG00000177169|chr12:131908958-131908958|C/T|missense_variant	ULK1|p.S184F|1|0.21|ENSG00000177169|chr12:131908958-131908958|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7532348632812	2	525.753564	1049.49257	0.32601	0.0001714	-1.2509	-0.00065768	-0.92492	-0.00048628	525.7528054644735	61.234	0.41039	61.234	61.086	61.496	0					33	14	3	0	0	0	0.16036	1	13744	13744		23.148	1.4018	1	234710			15543	930	10218	10331	21082	21082					-0.030191662863899182
PMYMAPEVI	9	Unmodified	_PMYMAPEVI_					0	0	0		ULK1|p.S184F|1|0.21|ENSG00000177169|chr12:131908958-131908958|C/T|missense_variant;ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1	ULK1|p.S184F|1|0.21|ENSG00000177169|chr12:131908958-131908958|C/T|missense_variant	ULK1|p.S184F|1|0.21|ENSG00000177169|chr12:131908958-131908958|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7530517578125	2	525.753564	1049.49257	0.14696	7.7263E-05	-1.0255	-0.00053913	-0.87849	-0.00046187	525.7530404209843	61.176	0.43446	61.249	61	61.435	0.073421					30	14	3	0	0	0	0.16036	1	13584	13584		23.148	1.4018	1	204270			15544	930	10218	10331	21083	21083					-0.030191662863899182
PNAVEQYFDQL	11	Unmodified	_PNAVEQYFDQL_					0	0	0			REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF	REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.8789978027344	3	441.878704	1322.61428	0.82924	0.00036642	-1.702	-0.00075208	-0.87276	-0.00038565	441.8778264857069	65.792	0.43938	65.792	65.549	65.988	0					21	15	2	0	0	0	0.3996	1	15127	15127		4.4062	0	1	111560	+	+	15545	7849	10219	10332	21084	21084					-0.03412129398657271
PNCIHAVMGPR	11	Unmodified	_PNCIHAVMGPR_					0	0	0			REV__ENST00000597864.1_1_19:58123876-58123951:+|nuORF	REV__ENST00000597864.1_1_19:58123876-58123951:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7958374023438	2	597.79716	1193.57977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.22	1	107.22	106.72	107.72	0								0	0	0	0.33873	1	27668	27668		1.1933	0.59184	1		+		15546	12615	10220	10333	21085	21085					-0.009279472921207343
PNELVDLTL	9	Unmodified	_PNELVDLTL_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2792663574219	2	507.279315	1012.54408	0.46669	0.00023674	-0.094317	-4.7845E-05	0.37237	0.0001889	507.27913066596574	70.408	0.65652	70.408	70.018	70.675	0					76	24	4	0	0	0	0.07372	3	16451	16451;16496;16591		38.176	0	1	930540	+		15547	10415	10221	10334	21086;21087;21088	21086					0.03830617003529824
PNELVDLTL	9	Unmodified	_PNELVDLTL_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2795104980469	2	507.279315	1012.54408	0.48771	0.00024741	-0.32206	-0.00016338	0.16565	8.4031E-05	507.2790708584896	70.315	1.6323	70.376	69.996	71.628	0.060562					152	64	3	0	0	0	0.07372	4	16369	16276;16324;16369;16413		38.176	0	1	1077900	+		15548	10415	10221	10334	21089;21090;21091;21092	21091					0.03830617003529824
PNEQQITR	8	Unmodified	_PNEQQITR_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.25567626953125	2	493.256705	984.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.465	1	27.552	27.052	28.052	0.0867								0	0	0	0.38003	1	3424	3424		27.629	2.6378	1		+		15549	8369	10222	10335	21093	21093					0.005988112609884411
PNFYSDLIL	9	Unmodified	_PNFYSDLIL_					0	0	0			REV__ENST00000522308.1_1_8:121457695-121463626:+|nuORF	REV__ENST00000522308.1_1_8:121457695-121463626:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2819213867188	2	541.281857	1080.54916	0.47605	0.00025768	0.3697	0.00020011	0.84576	0.00045779	541.2818112266227	85.598	0.39667	85.598	85.482	85.879	0					42	18	3	0	0	0	0.2546	1	21221	21221		12.241	0	1	152930	+		15550	12301	10223	10336	21094	21094					0.012109208661513549
PNGDDDAWHL	10	Unmodified	_PNGDDDAWHL_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2415771484375	2	570.241252	1138.46795	0.12342	7.0382E-05	0.29922	0.00017063	0.42264	0.00024101	570.2412045520233	49.432	0.37768	49.509	49.312	49.689	0.076607					25	13	2	0	0	0	0.46554	1	10048	10048		1.8442	0.19162	1	136820	+		15551	10464	10224	10337	21095	21095					-0.09574386843905813
PNHRGRRQ	8	Unmodified	_PNHRGRRQ_					0	0	0		ENST00000519262.5_1_8:58907100-58944214:+|nuORF	ENST00000519262.5_1_8:58907100-58944214:+|nuORF	ENST00000519262.5_1_8:58907100-58944214:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7818298339844	2	510.781548	1019.54854	-0.1318	-6.7319E-05	2.6207	0.0013386	2.4889	0.0012713	510.7827551554603	30.891	0.29225	30.891	30.757	31.049	0					22	13	2	0	0	0	0.54097	1	4560	4560		0.69038	0	1	21203			15552	6945	10225	10338	21096	21096					0.039549837803292576
PNIAVFDLAG	10	Unmodified	_PNIAVFDLAG_					0	0	0			REV__ENST00000505072.5_1_3:130613078-130649282:+|nuORF	REV__ENST00000505072.5_1_3:130613078-130649282:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7925109863281	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.157	1	61.157	60.657	61.657	0								0	0	0	0.2369	1	13709	13709		25.399	2.2509	1		+		15553	12220	10226	10339	21097	21097					0.02670054068948957
PNIHFIKQANW	11	Unmodified	_PNIHFIKQANW_					0	0	0			REV__nc|ENSG00000181222|P24928|POLR2A	REV__nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.5785217285156	3	456.578811	1366.7146	0.48315	0.0002206	-0.51054	-0.0002331	-0.027389	-1.2505E-05	456.5783780398975	68.169	0.55237	68.169	67.771	68.324	0					27	20	2	0	0	0	0.40824	1	15832	15832		2.4348	0	1	93708	+		15554	10527	10227	10340	21098	21098					0.04591572445656311
PNIHFIKQANW	11	Unmodified	_PNIHFIKQANW_					0	0	0			REV__nc|ENSG00000181222|P24928|POLR2A	REV__nc|ENSG00000181222|P24928|POLR2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.57861328125	3	456.578811	1366.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.88	1	67.943	67.443	68.443	0.063507								0	0	0	0.32962	1	15609	15609		4.4062	0.28952	1		+		15555	10527	10227	10340	21099	21099					0.04591572445656311
PNKELDEE	8	Unmodified	_PNKELDEE_					0	0	0		ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.9400329589844	2	487.227279	972.440005	0.24473	0.00011924	-0.011446	-5.5769E-06	0.23328	0.00011366	487.22726176440176	47.255	0.29212	47.255	47.144	47.436	0					14	9	2	0	0	0	0.35759	1	9471	9471		9.3474	0	1	33006			15556	3433	10228	10341	21100	21100					-0.047317098239886946
PNKELDEE	8	Unmodified	_PNKELDEE_					0	0	0		ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.9408874511719	2	487.227279	972.440005	0.19971	9.7303E-05	0.066972	3.2631E-05	0.26668	0.00012993	487.2274475057072	47.172	0.42971	47.255	47.06	47.489	0.083096					24	15	3	0	0	0	0.35759	1	9304	9304		9.3474	0	1	42287			15557	3433	10228	10341	21101	21101					-0.047317098239886946
PNLAFLRF	8	Unmodified	_PNLAFLRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2822570800781	2	489.281995	976.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.451	1	72.451	71.951	72.951	0								0	0	0	0.37718	1	17153	17153		32.305	15.363	1				15558	5330	10229	10342	21102	21102					0.06022385376661532
PNLAFLRF	8	Unmodified	_PNLAFLRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.28240966796875	2	489.281995	976.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.615	1	72.615	72.115	73.115	0								0	0	0	0.38822	1	17203	17203		7.9102	2.1497	1				15559	5330	10229	10342	21103	21103					0.06022385376661532
PNLRPPMS	8	Unmodified	_PNLRPPMS_					0	0	0			REV__ENST00000526255.1_1_1:211485798-211487107:+|nuORF	REV__ENST00000526255.1_1_1:211485798-211487107:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7441711425781	2	456.242012	910.469472	0.04853	2.2142E-05	1.4297	0.00065228	1.4782	0.00067442	456.24243570881526	72.554	0.52437	72.61	72.345	72.869	0.055931					25	17	3	0	0	0	0.41225	1	17030	17030		24.674	1.5255	1	50040	+		15560	8831	10230	10343	21104	21104					0.010655757111635467
PNLVDITNL	9	Unmodified	_PNLVDITNL_					0	0	0			REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7795104980469	2	499.779482	997.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.625	1	38.625	38.125	39.125	0								0	0	0	0.24978	1	6878	6878		9.3831	0	1		+		15561	11345	10231	10344	21105	21105					0.04554036723357058
PNPGRGGRRAC	11	Unmodified	_PNPGRGGRRAC_					0	0	0			REV__ENST00000545106.1_1_11:73371703-73372760:+|nuORF	REV__ENST00000545106.1_1_11:73371703-73372760:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7936401367188	2	570.793798	1139.57304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.493	1	29.493	28.993	29.993	0								0	0	0	0.34212	1	4147	4147		0	0	1		+		15562	12412	10232	10345	21106	21106					0.00883875871568307
PNQVDHAQI	9	Unmodified	_PNQVDHAQI_					0	0	0			REV__nc|ENSG00000132182|Q8TEM1-2|NUP210	REV__nc|ENSG00000132182|Q8TEM1-2|NUP210	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.255126953125	2	511.256705	1020.49886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.372	1	74.372	73.872	74.872	0								0	0	0	0.22786	1	17741	17741		13.906	0.86358	1		+		15563	9106	10233	10346	21107	21107					-0.010571887390028678
PNRIEHSL	8	Unmodified	_PNRIEHSL_					0	0	0			REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3	REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2609558105469	2	483.261791	964.509028	-0.47258	-0.00022838	0.19376	9.3638E-05	-0.27882	-0.00013474	483.2618838332606	24.979	1.9818	24.979	24.712	26.694	0					333	152	4	0	0	0	0.54097	1	3171	3171		0.69038	0	1	1090700	+		15564	9440	10234	10347	21108	21108					0.025354189862468957
PNRTETAL	8	Unmodified	_PNRTETAL_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.2400817871094	2	451.240524	900.466495	-0.18007	-8.1255E-05	-0.24402	-0.00011011	-0.42409	-0.00019137	451.24026097548216	40.686	0.51175	40.686	40.456	40.967	0					31	17	3	0	0	0	0.53118	1	7525	7525		7.2892	0	1	98277	+		15565	8878	10235	10348	21109	21109					0.012280238579705838
PNSHTYPTT	9	Unmodified	_PNSHTYPTT_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2358703613281	2	509.235439	1016.45632	0.17992	9.1619E-05	0.51502	0.00026227	0.69493	0.00035388	509.236005501589	95.303	0.33463	95.342	95.115	95.45	0.038872					19	13	3	0	0	0	0.33849	1	23970	23970		1.6526	0.45928	1	43258	+		15566	10301	10236	10349	21110	21110					-0.05124583867245747
PNSTVVKAAAC	11	Unmodified	_PNSTVVKAAAC_					0	0	0			REV__ENSG00000237651|ENST00000432605|C2orf74	REV__ENSG00000237651|ENST00000432605|C2orf74	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7930908203125	2	530.776416	1059.53828	0.29343	0.00015574	-2.0131	-0.0010685	-1.7197	-0.00091276	530.7749855521662	56.365	0.24522	56.365	56.134	56.379	0					13	8	2	0	0	0	0.29897	1	12252	12252		18.146	1.2041	1	174190	+		15567	11055	10237	10350	21111	21111					0.010891952201973254
PNSTVVKAAAC	11	Unmodified	_PNSTVVKAAAC_					0	0	0			REV__ENSG00000237651|ENST00000432605|C2orf74	REV__ENSG00000237651|ENST00000432605|C2orf74	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7928466796875	2	530.776416	1059.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.291	1	56.358	55.858	56.858	0.066452								0	0	0	0.2709	1	12094	12094		18.146	1.2041	1		+		15568	11055	10237	10350	21112	21112					0.010891952201973254
PNTGQPKKQGR	11	Unmodified	_PNTGQPKKQGR_					0	0	0		ZSWIM3|p.E611K|1|0.19|ENSG00000132801|chr20:45878389-45878389|G/A|missense_variant	ZSWIM3|p.E611K|1|0.19|ENSG00000132801|chr20:45878389-45878389|G/A|missense_variant	ZSWIM3|p.E611K|1|0.19|ENSG00000132801|chr20:45878389-45878389|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2258605957031	3	404.226549	1209.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.64	1	27.64	27.14	28.14	0								0	0	0	0.30565	1	3605	3605		12.856	3.8797	1				15569	13775	10238	10351	21113	21113					0.0613752488911814
PNTKIFQALF	10	Unmodified	_PNTKIFQALF_					0	0	0		ENST00000474293.2_1_6:127775237-127796815:-|nuORF	ENST00000474293.2_1_6:127775237-127796815:-|nuORF	ENST00000474293.2_1_6:127775237-127796815:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7530517578125	2	589.832049	1177.64954	0.5021	0.00029615	-0.69929	-0.00041246	-0.19719	-0.00011631	589.8316568683374	82.19	0.32909	82.212	82.069	82.398	0.021866					19	11	2	0	0	0	0.31621	1	19935	19935		10.8	2.0541	1	96518			15570	6696	10239	10352	21114	21114					0.06782577919807409
PNTKIFQALF	10	Unmodified	_PNTKIFQALF_					0	0	0		ENST00000474293.2_1_6:127775237-127796815:-|nuORF	ENST00000474293.2_1_6:127775237-127796815:-|nuORF	ENST00000474293.2_1_6:127775237-127796815:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	589.832049	1177.64954	0.74299	0.00043824	-0.76813	-0.00045307	-0.025139	-1.4828E-05	589.8314939713662	82.195	0.25222	82.195	82.036	82.288	0	-0.0085005	-3.8319E-05	NaN	10.8	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88874			15571	6696	10239	10352							0.06782577919807409
PNTQQEVYVPQ	11	Unmodified	_PNTQQEVYVPQ_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.882080078125	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.647	1	51.717	51.217	52.217	0.069874								0	0	0	0.33867	1	10679	10679		1.2148	0.20126	1				15572	335	10240	10353	21115	21115					-0.013567270243811436
PPARGQRMGL	10	Unmodified	_PPARGQRMGL_					0	0	0		ENST00000377990.6_2_2:65283521-65283659:+|nuORF;ENST00000475851.1_1_2:65283521-65298633:+|nuORF	ENST00000377990.6_2_2:65283521-65283659:+|nuORF	ENST00000377990.6_2_2:65283521-65283659:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2769775390625	2	541.798017	1081.58148	0.2307	0.00012499	-0.40435	-0.00021908	-0.17365	-9.4084E-05	541.7975393803258	72.71	0.75172	72.766	72.43	73.182	0.055931					52	25	4	0	0	0	0.31731	1	16986	16986		6.2058	1.8765	1	240210			15573	6259	10241	10354	21116	21116					0.04395429788155525
PPCASCGFR	9	Unmodified	_PPCASCGFR_					0	0	0			REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.8282165527344	2	469.204573	936.394592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.62	1	103.62	103.12	104.12	0								0	0	0	0.28527	1	26643	26643		2.0598	0	1		+		15574	12027	10242	10355	21117	21117					-0.07614930091710903
PPCFFFSV	8	Unmodified	_PPCFFFSV_					0	0	0		ENST00000259154.8_1_1:215794738-215794792:+|nuORF	ENST00000259154.8_1_1:215794738-215794792:+|nuORF	ENST00000259154.8_1_1:215794738-215794792:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.22186279296875	2	472.222757	942.430961	-0.20901	-9.8698E-05	-0.30675	-0.00014486	-0.51576	-0.00024355	472.22210663084854	39.634	0.4316	39.723	39.608	40.039	0.088562					25	15	2	0	0	0	0.53817	1	7085	7085		2.5775	0	1	43901			15575	5856	10243	10356	21118	21118					-0.042557299233635604
PPCFFFSV	8	Unmodified	_PPCFFFSV_					0	0	0		ENST00000259154.8_1_1:215794738-215794792:+|nuORF	ENST00000259154.8_1_1:215794738-215794792:+|nuORF	ENST00000259154.8_1_1:215794738-215794792:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	472.222757	942.430961	-0.25765	-0.00012167	-1.071	-0.00050577	-1.3287	-0.00062744	472.222282691067	39.766	0.51542	39.766	39.496	40.012	0	0.021625	-5.4453E-05	NaN	2.5775	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42442			15576	5856	10243	10356							-0.042557299233635604
PPDFRDLPE	9	Unmodified	_PPDFRDLPE_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2850341796875	2	543.266739	1084.51892	0.28356	0.00015405	3.3143	0.0018006	3.5979	0.0019546	543.2684448693815	56.092	0.43124	56.158	55.981	56.412	0.066448					25	16	2	0	0	0	0.26684	1	12072	12072		10.824	3.5347	1	347990			15577	3414	10244	10357	21119	21119					-0.01995437799064348
PPDLDIMEKL	10	Unmodified	_PPDLDIMEKL_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8080444335938	2	585.807382	1169.60021	0.38654	0.00022644	-0.059713	-3.4981E-05	0.32683	0.00019146	585.8072870088595	35.966	0.93592	35.966	35.675	36.611	0					66	36	2	0	0	0	0.46746	1	6183	6183		1.4819	0	1	60286			15578	805	10245	10358	21120	21120					0.02219501848685468
PPDRTQLF	8	Unmodified	_PPDRTQLF_					0	0	0			REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF	REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2574768066406	2	487.258717	972.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.803	1	63.803	63.303	64.303	0								0	0	0	0.38822	1	14519	14519		5.7604	0.52976	1		+		15579	12022	10246	10359	21121	21121					0.015529007547115725
PPEDMLQRLH	10	Unmodified	_PPEDMLQRLH_					0	0	0			REV__ENST00000473916.1_1_6:30891971-30893984:+|nuORF	REV__ENST00000473916.1_1_6:30891971-30893984:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.7984008789062	2	618.313697	1234.61284	0.041922	2.5921E-05	-0.402	-0.00024856	-0.36008	-0.00022264	618.3134724742591	64.447	0.59875	64.516	64.172	64.771	0.068916					35	21	2	0	0	0	0.31811	1	14519	14519		2.9952	0.26005	1	99167	+		15580	9275	10247	10360	21122	21122					0.004919580315799976
PPEEEPLVL	9	Unmodified	_PPEEEPLVL_					0	0	0		ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7743835449219	2	511.773865	1021.53318	0.48296	0.00024717	-0.22237	-0.0001138	0.26059	0.00013337	511.7736633571213	68.859	0.43983	68.859	68.692	69.132	0					34	16	3	0	0	0	0.21398	1	16068	16068		16.942	0	1	113380			15581	1173	10248	10361	21123	21123					0.02327214629235641
PPELCWVL	8	Unmodified	_PPELCWVL_					0	0	0		GRIN3A|p.R353C|1|0.81|ENSG00000198785|chr9:101686843-101686843|G/A|missense_variant	GRIN3A|p.R353C|1|0.81|ENSG00000198785|chr9:101686843-101686843|G/A|missense_variant	GRIN3A|p.R353C|1|0.81|ENSG00000198785|chr9:101686843-101686843|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7567138671875	2	478.749139	955.483725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.292	1	42.382	41.882	42.882	0.089764								0	0	0	0.38822	1	7857	7857		8.5933	2.2392	1				15582	7346	10249	10362	21124	21124					0.004202281394441343
PPEWVPII	8	Unmodified	_PPEWVPII_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.7708435058594	2	475.770929	949.527304	-0.0056294	-2.6783E-06	0.38532	0.00018333	0.37969	0.00018065	475.7709421070163	95.738	0.35065	95.738	95.575	95.925	0					30	15	3	0	0	0	0.49441	1	24261	24261		13.508	1.8676	1	150780			15583	5472	10250	10363	21125	21125					0.05052160908223868
PPEWVPII	8	Unmodified	_PPEWVPII_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	475.770929	949.527304	-0.011478	-5.4609E-06	0.47011	0.00022367	0.45864	0.00021821	475.7710782617871	95.704	0.3576	95.743	95.604	95.961	0.038872	0.0024731	2.4727E-05	NaN	13.508	24	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111510			15584	5472	10250	10363							0.05052160908223868
PPFLKIWLH	9	Unmodified	_PPFLKIWLH_					0	0	0			REV__nc|ENSG00000091181|Q01344-5|IL5RA	REV__nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.34423828125	2	575.84222	1149.66989	0.51788	0.00029822	-0.46864	-0.00026986	0.049244	2.8357E-05	575.8416443056561	84.489	1.7086	84.512	84.012	85.72	0.023132					156	88	3	0	0	0	0.31496	1	20733	20733		4.756	0.81161	1	1635200	+		15585	8318	10251	10364	21126	21126					0.10103793370262792
PPFYATSIFQL	11	Unmodified	_PPFYATSIFQL_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.837890625	2	642.337164	1282.65977	0.33224	0.00021341	-0.39311	-0.00025251	-0.060865	-3.9096E-05	642.3368295276975	74.386	0.68929	74.435	74.156	74.846	0.048546					75	24	4	0	0	0	0.38777	1	17701	17701		7.1017	7.1017	1	2025100			15586	3906	10252	10365	21127	21127					0.02975140854368874
PPHELKNTF	9	Unmodified	_PPHELKNTF_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.305908203125	2	541.785099	1081.55564	0.26407	0.00014307	-0.36938	-0.00020013	-0.10531	-5.7055E-05	541.7849653170551	48.416	0.38313	48.416	48.192	48.576	0					24	12	3	0	0	0	0.20194	1	9825	9825		24.021	9.1823	1	96892			15587	3823	10253	10366	21128	21128					0.018128588175159166
PPHHAPQASI	10	Unmodified	_PPHHAPQASI_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7741088867188	2	527.775065	1053.53558	-0.12771	-6.7402E-05	-1.092	-0.00057634	-1.2197	-0.00064374	527.7742570796264	31.259	0.48975	31.259	31.049	31.539	0					53	23	3	0	0	0	0.46554	1	4703	4703		1.8442	1.0506	1	40711	+		15588	8324	10254	10367	21129	21129					0.010951078775406131
PPHHAPQASI	10	Unmodified	_PPHHAPQASI_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	527.775065	1053.53558	-0.11437	-6.036E-05	-1.2036	-0.00063522	-1.318	-0.00069558	527.7743343245853	31.241	0.52238	31.314	31.091	31.613	0.073782	0.027812	-5.4677E-05	NaN	1.8442	44	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39708	+		15589	8324	10254	10367							0.010951078775406131
PPHHGWSR	8	Unmodified	_PPHHGWSR_					0	0	0		ENST00000413911.1_1_2:191745560-191746172:-|nuORF	ENST00000413911.1_1_2:191745560-191746172:-|nuORF	ENST00000413911.1_1_2:191745560-191746172:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2508239746094	2	487.241193	972.467832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.43	1	25.526	25.026	26.026	0.096073								0	0	0	0.38822	1	2843	2843		0.79363	0	1				15590	6410	10255	10368	21130	21130					-0.01950297262578715
PPHHSQHADRG	11	Unmodified	_PPHHSQHADRG_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.7957153320312	2	619.792309	1237.57007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.233	1	34.309	33.809	34.809	0.076244								0	0	0	0.33835	1	5437	5437		1.3295	0.72803	1		+		15591	10602	10256	10369	21131	21131					-0.03921675981655426
PPHLAFPM	8	Unmodified	_PPHLAFPM_					0	0	0		ENST00000575001.1_1_17:7211023-7213200:+|nuORF;ENST00000355068.4_1_17:7210662-7213200:+|nuORF	ENST00000575001.1_1_17:7211023-7213200:+|nuORF	ENST00000575001.1_1_17:7211023-7213200:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.2367858886719	2	455.236199	908.457844	0.5763	0.00026235	0.84754	0.00038583	1.4238	0.00064818	455.2366784162849	99.763	0.8549	99.763	99.433	100.29	0					111	45	4	0	0	0	0.54081	1	25587	25587		0.79363	0	1	5490600			15592	6117	10257	10370	21132	21132					-4.6213121777327615E-05
PPIARAIKK	9	Unmodified	_PPIARAIKK_					0	0	0		nc|ENSG00000092199|P07910-4|HNRNPC	nc|ENSG00000092199|P07910-4|HNRNPC	nc|ENSG00000092199|P07910-4|HNRNPC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.3322448730469	2	497.332019	992.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.96	1	119.96	119.46	120.46	0								0	0	0	0.29233	1	30175	30175		0.6015	0.6015	1				15593	7465	10258	10371	21133	21133					0.15286622710459596
PPIHESLSI	9	Unmodified	_PPIHESLSI_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B;ENST00000590271.5_1_18:76954405-76969579:+|nuORF	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.32647705078125	2	496.7742	991.533846	0.34777	0.00017276	0.16116	8.0062E-05	0.50893	0.00025282	496.7741880965069	56.384	0.83815	56.384	56.162	57	0					62	30	3	0	0	0	0.2446	1	12370	12370		11.64	0	1	522950			15594	4155	10259	10372	21134	21134					0.0377405406896969
PPKGRGGR	8	Unmodified	_PPKGRGGR_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.7460632324219	2	412.746111	823.477669	1.0162	0.00041944	-0.34301	-0.00014158	0.67321	0.00027786	412.7459013092638	80.269	1.3236	80.269	79.79	81.114	0					102	45	4	0	0	0	0.53817	1	19506	19506		2.5775	0	1	3762000			15595	4217	10260	10373	21135	21135					0.05886890742806372
PPLDEFSPSFI	11	Unmodified	_PPLDEFSPSFI_					0	0	0			REV__ENST00000287169.7_1_11:57440150-57440300:+|nuORF	REV__ENST00000287169.7_1_11:57440150-57440300:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8128662109375	2	624.810979	1247.6074	0.46604	0.00029118	2.2332	0.0013954	2.6993	0.0016865	624.8120338793841	80.058	1.2512	80.058	79.562	80.813	0					61	43	3	0	0	0	0.39824	1	19394	19394		9.3831	5.7866	1	247520	+		15596	11308	10261	10374	21136	21136					-0.0064944227922296704
PPLFLKIV	8	Unmodified	_PPLFLKIV_					0	0	0		ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4	ENST00000460168.1_1_10:69726418-69749980:-|nuORF	ENST00000460168.1_1_10:69726418-69749980:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	463.3102722167969	2	463.807314	925.600075	0.097572	4.5255E-05	1.6875	0.00078269	1.7851	0.00082795	463.809707156155	112.09	0.40997	112.11	112	112.41	0.014595					60	48	2	0	0	0	0.3576	1	28577	28577		2.5775	0	1	622280			15597	3371	10262	10375	21137	21137					0.13429914701657708
PPLLLLKK	8	Unmodified	_PPLLLLKK_					0	0	0			REV__ENSG00000161542|ENST00000446526|PRPSAP1	REV__ENSG00000161542|ENST00000446526|PRPSAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	461.32952880859375	2	461.328414	920.642274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.02	1	112.04	111.54	112.54	0.014595								0	0	0	0.38822	1	28561	28561		0	0	1		+		15598	9866	10263	10376	21138	21138					0.17877890110037242
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2642517089844	2	457.264425	912.514297	0.50293	0.00022997	-0.42186	-0.0001929	0.08107	3.707E-05	457.26415319391543	74.365	1.5564	74.365	74.095	75.652	0					109	58	3	0	0	0	0.53257	1	17722	17722		6.3541	3.0728	1	276670			15599	2675	10264	10377	21139	21139					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.26434326171875	2	457.264425	912.514297	0.43652	0.0001996	-0.44792	-0.00020482	-0.011408	-5.2163E-06	457.2641145547303	76.292	2.7408	76.292	76.041	78.782	0					250	108	3	0	0	0	0.53257	3	18367	18367;18710;18847		6.3541	3.0728	1	989850			15600	2675	10264	10377	21140;21141;21142	21140					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2644958496094	2	457.264425	912.514297	0.18316	8.3751E-05	-0.079927	-3.6548E-05	0.10323	4.7204E-05	457.26431643892676	78.874	0.6541	78.904	78.738	79.392	0.030159					36	22	2	0	0	0	0.54081	1	19077	19077		0.79363	0	1	109110			15601	2675	10264	10377	21143	21143					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2643127441406	2	457.264425	912.514297	0.26441	0.0001209	-0.27889	-0.00012753	-0.014484	-6.623E-06	457.2642246510247	79.786	0.7422	79.812	79.388	80.131	0.026436					43	26	2	0	0	0	0.53771	1	19200	19200		2.8892	0	1	169820			15602	2675	10264	10377	21144	21144					0.05454006524507804
PPLNSDIGGS	10	Unmodified	_PPLNSDIGGS_					0	0	0		nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	nc|ENSG00000174373|Q6GYQ0|RALGAPA1	nc|ENSG00000174373|Q6GYQ0|RALGAPA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7815856933594	2	478.737814	955.461075	-0.050172	-2.4019E-05	-1.2703	-0.00060814	-1.3205	-0.00063216	478.73703396718616	38.845	0.28728	38.845	38.716	39.004	0					18	11	2	0	0	0	0.31841	1	6958	6958		1.3295	0.63916	1	31698			15603	4580	10265	10378	21145	21145					-0.01843699724452108
PPLPEPNTSL	10	Unmodified	_PPLPEPNTSL_					0	0	0			REV__ENSG00000188305|ENST00000342063|PEAK3	REV__ENSG00000188305|ENST00000342063|PEAK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7847290039062	2	532.784764	1063.55498	0.021871	1.1652E-05	0.79398	0.00042302	0.81585	0.00043467	532.7847263767223	42.87	0.40818	42.96	42.754	43.162	0.089764					39	15	4	0	0	0	0.3016	1	8038	8038		16.149	0	1	123280	+		15604	10763	10266	10379	21146	21146					0.025740193778119647
PPLPKKRR	8	Unmodified	_PPLPKKRR_					0	0	0			REV__nc|ENSG00000135913|Q86T82-2|USP37	REV__nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.83087158203125	2	496.329811	990.645068	0.066775	3.3142E-05	4.2394	0.0021041	4.3062	0.0021373	496.33256459555975	112.65	0.37372	112.65	112.5	112.87	0					61	37	3	0	0	0	0.3576	1	28888	28888		2.3027	1.5091	1	286880	+		15605	9224	10267	10380	21147	21147					0.14937158287557395
PPLPKKRR	8	Unmodified	_PPLPKKRR_					0	0	0			REV__nc|ENSG00000135913|Q86T82-2|USP37	REV__nc|ENSG00000135913|Q86T82-2|USP37	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	496.329811	990.645068	0.37092	0.0001841	6.3102	0.0031319	6.6811	0.003316	496.33237336132214	112.87	0.17518	112.89	112.85	113.02	0.013809	0.11809	0.00053316	NaN	2.3027	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147830	+		15606	9224	10267	10380							0.14937158287557395
PPLPYPSPGPG	11	Unmodified	_PPLPYPSPGPG_					0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7847290039062	2	539.782025	1077.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.74	1	104.78	104.28	105.28	0.034004								0	0	0	0.32709	1	26788	26788		5.2969	1.3525	1		+		15607	8611	10268	10381	21148	21148					0.013823405859966442
PPLPYPSPGPG	11	Unmodified	_PPLPYPSPGPG_					0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7842407226562	2	539.782025	1077.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.88	1	104.91	104.41	105.41	0.034004								0	0	0	0.33362	1	26825	26825		2.9952	0.26005	1		+		15608	8611	10268	10381	21149	21149					0.013823405859966442
PPLRKYMLVF	10	Unmodified	_PPLRKYMLVF_					0	0	0		ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8571472167969	3	421.914255	1262.72094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.042	1	12.042	11.542	12.542	0								0	0	0	0.34005	1	8	8		0.15932	0.064481	1				15609	4865	10269	10382	21150	21150					0.10008374352787541
PPLRLPLTGF	10	Unmodified	_PPLRLPLTGF_					0	0	0		nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.30859375	2	555.837134	1109.65972	0.55426	0.00030808	-0.38961	-0.00021656	0.16466	9.1523E-05	555.8367384733501	83.799	0.52647	83.82	83.641	84.168	0.021751					30	18	2	0	0	0	0.31783	1	20558	20558		3.9444	0.3479	1	171560			15610	7641	10270	10383	21151	21151					0.10927185645050486
PPPESKRLFI	10	Unmodified	_PPPESKRLFI_					0	0	0			REV__ENST00000222122.9_1_19:49133840-49134074:-|nuORF	REV__ENST00000222122.9_1_19:49133840-49134074:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.2908325195312	2	592.345323	1182.67609	0.19902	0.00011789	0.21942	0.00012997	0.41843	0.00024786	592.3454390887587	49.514	0.39252	49.59	49.428	49.821	0.076603					27	13	3	0	0	0	0.31773	1	10010	10010		4.897	0.95262	1	111710	+		15611	11183	10271	10384	21152	21152					0.09206266811133901
PPPFISAQIP	10	Unmodified	_PPPFISAQIP_					0	0	0			REV__ENSG00000149506|ENST00000278853|ZP1	REV__ENSG00000149506|ENST00000278853|ZP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7879028320312	2	533.800217	1065.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.962	1	52.962	52.462	53.462	0								0	0	0	0.26818	1	11214	11214		21.537	4.4241	1		+		15612	9615	10272	10385	21153	21153					0.055712174827021954
PPPGARGR	8	Unmodified	_PPPGARGR_					0	0	0		KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2331848144531	2	404.232836	806.45112	0.4069	0.00016448	0.26659	0.00010776	0.67349	0.00027225	404.23287165774656	80.213	1.4907	80.237	79.645	81.136	0.023605					125	52	4	0	0	0	0.53423	1	19441	19441		5.2307	0	1	3327200			15613	7377	10273	10386	21154	21154					0.040152018514731935
PPPGARGR	8	Unmodified	_PPPGARGR_					0	0	0		KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	404.232836	806.45112	1.0304	0.0004165	-0.30673	-0.00012399	0.72363	0.00029251	404.2326342893196	80.269	1.3582	80.269	79.815	81.173	0	0.016162	-0.00028509	NaN	5.2307	101	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3560600			15614	7377	10273	10386							0.040152018514731935
PPPGVCML	8	Unmodified	_PPPGVCML_					0	0	0		ENST00000378078.4_1_9:35754407-35754683:+|nuORF	ENST00000378078.4_1_9:35754407-35754683:+|nuORF	ENST00000378078.4_1_9:35754407-35754683:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.2041320800781	2	407.20351	812.392467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.075	1	55.14	54.64	55.64	0.065128								0	0	0	0.38822	1	11723	11723		2.8892	0	1				15615	6261	10274	10387	21155	21155					-0.021233588295331174
PPPKKFRS	8	Unmodified	_PPPKKFRS_					0	0	0		ENST00000535644.1_1_11:67163166-67165027:+|nuORF;ENSG00000172613|ENST00000307980|RAD9A	ENST00000535644.1_1_11:67163166-67165027:+|nuORF	ENST00000535644.1_1_11:67163166-67165027:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7873840332031	2	478.787444	955.560336	-0.46188	-0.00022114	0.065542	3.1381E-05	-0.39634	-0.00018976	478.7874025541274	44.964	0.64079	44.964	44.747	45.388	0					48	22	3	0	0	0	0.53423	1	8761	8761		5.2307	0.47466	1	235490			15616	4504	10275	10388	21156	21156					0.08077787750949028
PPPLAPKS	8	Unmodified	_PPPLAPKS_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-4|HPSE	REV__nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2437438964844	2	403.742171	805.469789	-0.12476	-5.037E-05	0.25518	0.00010303	0.13042	5.2655E-05	403.7421169269325	21.241	0.67834	21.341	21.155	21.834	0.099499					163	71	4	0	0	0	0.53026	1	1682	1682		7.9102	0	1	205110	+		15617	10310	10276	10389	21157	21157					0.05927318702663342
PPPLPGKT	8	Unmodified	_PPPLPGKT_					0	0	0		ENST00000588673.3_1_19:2270553-2271441:+|nuORF	ENST00000588673.3_1_19:2270553-2271441:+|nuORF	ENST00000588673.3_1_19:2270553-2271441:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.7420654296875	2	403.742171	805.469789	-0.12476	-5.037E-05	0.25518	0.00010303	0.13042	5.2655E-05	403.7421169269325	21.241	0.67834	21.341	21.155	21.834	0.099499					163	71	4	0	0	0	0.40691	2	1685	1685;1717		25.399	7.2643	1	205110			15618	7251	10277	10390	21158;21159	21158					0.059273187026519736
PPPLPSGLYF	10	Unmodified	_PPPLPSGLYF_					0	0	0			REV__ENST00000502379.5_1_5:218428-224813:+|nuORF	REV__ENST00000502379.5_1_5:218428-224813:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2944946289062	2	544.294768	1086.57498	0.45022	0.00024505	-0.29763	-0.000162	0.15259	8.3052E-05	544.2945693784679	71.14	0.29231	71.14	71.037	71.329	0					15	9	2	0	0	0	0.33099	1	16777	16777		19.257	0	1	127790	+		15619	12201	10278	10391	21160	21160					0.03515815108403331
PPPQNNLTLF	10	Unmodified	_PPPQNNLTLF_					0	0	0			REV__nc|ENSG00000183486|P20592-2|MX2	REV__nc|ENSG00000183486|P20592-2|MX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.32421875	2	570.806031	1139.59751	0.59511	0.00033969	-0.41177	-0.00023504	0.18333	0.00010465	570.8056225083365	67.711	0.46771	67.775	67.551	68.019	0.063507					32	15	3	0	0	0	0.30966	1	15535	15535		21.537	3.3906	1	320670	+		15620	10599	10279	10392	21161	21161					0.033294145060153824
PPPSDKRR	8	Unmodified	_PPPSDKRR_					0	0	0			REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7685852050781	2	476.769783	951.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.784	1	77.784	77.284	78.284	0								0	0	0	0.38822	1	18788	18788		5.7604	1.0044	1		+		15621	9229	10280	10393	21162	21162					0.047311252231338585
PPPTISTSI	9	Unmodified	_PPPTISTSI_					0	0	0		nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF	nc|ENSG00000148218|P13716-2|ALAD	nc|ENSG00000148218|P13716-2|ALAD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7558898925781	2	456.755475	911.496398	0.10733	4.9024E-05	0.21299	9.7284E-05	0.32032	0.00014631	456.75548781640083	69.145	1.0977	69.207	68.875	69.973	0.062126					81	40	3	0	0	0	0.3182	1	16163	16163		4.3292	0.38484	1	1583500			15622	6763	10281	10394	21163	21163					0.03710962803347684
PPPVGHSF	8	Unmodified	_PPPVGHSF_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;KMT2C|p.R1917K|1|0.16|ENSG00000055609|chr7:152182110-152182110|C/T|missense_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.3156433105469	2	419.216321	836.418088	0.26265	0.00011011	0.0079301	3.3244E-06	0.27058	0.00011343	419.21626809461003	53.473	0.69555	53.539	53.367	54.063	0.06543					38	30	2	0	0	0	0.3576	1	11367	11367		5.7604	5.7604	1	137610			15623	613	10282	10395	21164	21164					-0.0066642499124327514
PPPVGHSF	8	Unmodified	_PPPVGHSF_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;KMT2C|p.R1917K|1|0.16|ENSG00000055609|chr7:152182110-152182110|C/T|missense_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	419.216321	836.418088	0.55957	0.00023458	-0.24175	-0.00010135	0.31782	0.00013323	419.21617117439894	53.513	0.68103	53.513	53.361	54.042	0	-0.012709	-0.00013239	NaN	5.7604	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104300			15624	613	10282	10395							-0.0066642499124327514
PPPWYTGF	8	Unmodified	_PPPWYTGF_					0	0	0		ENST00000456170.5_1_1:44686783-44687191:-|nuORF	ENST00000456170.5_1_1:44686783-44687191:-|nuORF	ENST00000456170.5_1_1:44686783-44687191:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.729736328125	2	482.731803	963.449054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.447	1	47.447	46.947	47.947	0								0	0	0	0.38822	1	9542	9542		5.7604	1.4312	1				15625	6588	10283	10396	21165	21165					-0.03413271677015928
PPQKLQILVD	10	Unmodified	_PPQKLQILVD_					0	0	0		nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2	nc|ENSG00000182240|Q9Y5Z0-3|BACE2	nc|ENSG00000182240|Q9Y5Z0-3|BACE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.278	1	87.278	86.778	87.778	0								0	0	0	0.32971	1	21681	21681		12.241	2.8575	1				15626	4868	10284	10397	21166	21166					0.10690847091291289
PPQLAAPGRRA	11	Unmodified	_PPQLAAPGRRA_					0	0	0			REV__ENST00000219271.3_1_16:58079013-58079367:+|nuORF	REV__ENST00000219271.3_1_16:58079013-58079367:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3307495117188	2	567.330539	1132.64652	0.2232	0.00012663	-0.32185	-0.0001826	-0.098654	-5.5969E-05	567.330282121425	86.461	2.8884	86.489	85.666	88.554	0.027367					440	114	5	0	0	0	0.39744	1	21147	21147		4.897	4.897	1	7811600	+		15627	11178	10285	10398	21167	21167					0.0855074758567298
PPRPGRAG	8	Unmodified	_PPRPGRAG_					0	0	0		ENST00000468377.1_1_3:128208233-128208692:+|nuORF	ENST00000468377.1_1_3:128208233-128208692:+|nuORF	ENST00000468377.1_1_3:128208233-128208692:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2334289550781	2	404.232836	806.45112	0.4069	0.00016448	0.26659	0.00010776	0.67349	0.00027225	404.23287165774656	80.213	1.4907	80.237	79.645	81.136	0.023605					125	52	4	0	0	0	0.53858	1	19548	19548		2.3027	0	1	3327200			15628	6655	10286	10399	21168	21168					0.040152018514731935
PPRRKRRQ	8	Unmodified	_PPRRKRRQ_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.345703125	2	547.344315	1092.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.54	1	114.54	114.04	115.04	0								0	0	0	0.38822	1	29252	29252		0.69038	0.16561	1				15629	5236	10287	10400	21169	21169					0.13144695636560755
PPRRMQSQQE	10	Unmodified	_PPRRMQSQQE_					0	0	0		nc|ENSG00000152229|Q9H939-2|PSTPIP2	nc|ENSG00000152229|Q9H939-2|PSTPIP2	nc|ENSG00000152229|Q9H939-2|PSTPIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.55584716796875	3	419.543661	1255.60915	-0.17066	-7.1597E-05	4.0067	0.001681	3.836	0.0016094	419.88032107125963	43.879	0.2587	43.968	43.873	44.132	0.088924					12	8	2	0	0	0	0.42335	1	8344	8344		5.4027	0	1	55837			15630	7530	10288	10401	21170	21170					-0.008427117422570518
PPRVKVKK	8	Unmodified	_PPRVKVKK_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.32635498046875	2	476.326737	950.63892	-0.0039696	-1.8908E-06	0.41103	0.00019578	0.40706	0.00019389	476.3267520639898	112.22	1.6309	112.23	111.98	113.62	0.014595					338	205	4	0	0	0	0.54097	1	28920	28920		0.69038	0.69038	1	4447800	+		15631	8223	10289	10402	21171	21171					0.161626400560408
PPRWIWTPAM	10	Unmodified	_PPRWIWTPAM_					0	0	0			REV__ENST00000590592.5_1_18:33935532-33952671:+|nuORF	REV__ENST00000590592.5_1_18:33935532-33952671:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.5557556152344	3	418.886588	1253.63793	-0.03219	-1.3484E-05	0.14631	6.1288E-05	0.11412	4.7804E-05	418.8868895845786	45.153	0.47948	45.153	44.994	45.474	0					28	16	2	0	0	0	0.31766	1	8880	8880		5.7834	0	1	70674	+		15632	12576	10290	10403	21172	21172					0.021260576248096186
PPSHTTHP	8	Unmodified	_PPSHTTHP_					0	0	0			REV__ENSG00000184956|ENST00000421673|MUC6	REV__ENSG00000184956|ENST00000421673|MUC6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2140197753906	2	437.214309	872.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.71	1	104.71	104.21	105.21	0								0	0	0	0.38822	1	26952	26952		2.5775	0	1		+		15633	10648	10291	10404	21173	21173					-0.027245144849530334
PPSKRARG	8	Unmodified	_PPSKRARG_					0	0	0		nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.7591247558594	2	434.759218	867.503883	0.63957	0.00027806	-0.60542	-0.00026321	0.034157	1.485E-05	434.758908244329	82.61	1.1722	82.61	82.313	83.485	0					92	40	4	0	0	0	0.53494	1	20321	20321		4.756	0	1	2222400			15634	3976	10292	10405	21174	21174					0.06483159914284897
PPTLSLALSL	10	Unmodified	_PPTLSLALSL_					0	0	0		ENST00000505912.1_1_4:113332098-113335446:+|nuORF	ENST00000505912.1_1_4:113332098-113335446:+|nuORF	ENST00000505912.1_1_4:113332098-113335446:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.3070373535156	2	506.307875	1010.6012	0.46672	0.0002363	-1.1065	-0.00056024	-0.6398	-0.00032393	506.30716491489005	92.4	0.30948	92.4	92.243	92.552	0					21	11	2	0	0	0	0.34138	1	23212	23212		18.146	0	1	150450			15635	6889	10293	10406	21175	21175					0.0963208427989457
PPTLSLALSL	10	Unmodified	_PPTLSLALSL_					0	0	0		ENST00000505912.1_1_4:113332098-113335446:+|nuORF	ENST00000505912.1_1_4:113332098-113335446:+|nuORF	ENST00000505912.1_1_4:113332098-113335446:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.3078308105469	2	506.307875	1010.6012	0.4497	0.00022769	-0.99995	-0.00050629	-0.55025	-0.0002786	506.3072422035527	92.35	0.44734	92.387	92.223	92.671	0.03653					26	15	2	0	0	0	0.29844	1	23061	23061		22.736	0	1	150100			15636	6889	10293	10406	21176	21176					0.0963208427989457
PPTPFKRICP	10	Unmodified	_PPTPFKRICP_					0	0	0			REV__ENSG00000235034|ENST00000425202|C19orf81	REV__ENSG00000235034|ENST00000425202|C19orf81	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3206176757812	2	578.320794	1154.62703	0.37728	0.00021819	-0.071842	-4.1548E-05	0.30544	0.00017664	578.320677221397	86.551	1.9141	86.579	85.666	87.58	0.027573					143	78	3	0	0	0	0.45794	1	21479	21479		3.2813	0.28607	1	541340	+		15637	11049	10294	10407	21177	21177					0.05590655250534837
PPTPPRPLPMP	11	Unmodified	_PPTPPRPLPMP_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3336791992188	2	600.333901	1198.65325	0.34927	0.00020968	0.15978	9.5921E-05	0.50905	0.0003056	600.3338160642502	88.125	1.9043	88.155	87.237	89.141	0.030037					139	74	3	0	0	0	0.39569	1	21832	21832		5.2969	0.96765	1	928050	+		15638	8188	10295	10408	21178	21178					0.06186924421990625
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2991943359375	3	482.299265	1443.87596	-0.27837	-0.00013426	0.34654	0.00016714	0.068177	3.2882E-05	482.2992997534872	106.5	0.76289	106.5	106.22	106.99	0					188	73	4	0	0	0	0.41309	2	27430	27430;27467		1.3296	0	1	410650	+		15639	9372	10296	10409	21179;21180	21179					0.1717817932210437
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2989807128906	3	482.299265	1443.87596	0.025288	1.2196E-05	0.028521	1.3756E-05	0.053809	2.5952E-05	482.299132719591	106.45	0.65705	106.48	106.25	106.91	0.025711					188	68	4	0	0	0	0.41309	2	27230	27230;27264		1.3296	0	1	433790	+		15640	9372	10296	10409	21181;21182	21181					0.1717817932210437
PPTSPEPELA	10	Unmodified	_PPTSPEPELA_					0	0	0		nc|ENSG00000164252|Q8N302-2|AGGF1;nc|ENSG00000164252|Q8N302-3|AGGF1;ENSG00000164252|ENST00000312916|AGGF1	nc|ENSG00000164252|Q8N302-2|AGGF1	nc|ENSG00000164252|Q8N302-2|AGGF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7472534179688	2	519.261122	1036.50769	0.30652	0.00015916	-0.52589	-0.00027308	-0.21937	-0.00011391	519.2608201474175	48.141	0.20938	48.141	48.07	48.279	0					11	6	2	0	0	0	0.31712	1	9734	9734		6.7232	1.4925	1	45825			15641	3994	10297	10410	21183	21183					-0.009102598931804096
PPVHLHKN	8	Unmodified	_PPVHLHKN_					0	0	0		ENST00000528323.5_1_8:11627252-11627736:+|nuORF	ENST00000528323.5_1_8:11627252-11627736:+|nuORF	ENST00000528323.5_1_8:11627252-11627736:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7400817871094	2	471.269419	940.524284	-0.53932	-0.00025417	-0.37958	-0.00017889	-0.9189	-0.00043305	471.26913931563433	40.82	1.2097	40.82	40.31	41.52	0					93	42	4	0	0	0	0.3576	1	7387	7387		0.79363	0	1	682150			15642	7012	10298	10411	21184	21184					0.05164330574086762
PPVHLHKN	8	Unmodified	_PPVHLHKN_					0	0	0		ENST00000528323.5_1_8:11627252-11627736:+|nuORF	ENST00000528323.5_1_8:11627252-11627736:+|nuORF	ENST00000528323.5_1_8:11627252-11627736:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	471.269419	940.524284	-0.46568	-0.00021946	-0.54205	-0.00025545	-1.0077	-0.00047491	471.2690701158499	40.745	0.70119	40.834	40.594	41.295	0.089645	0.0071989	-6.9035E-05	NaN	0.79363	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557570			15643	7012	10298	10411							0.05164330574086762
PPVLSVAF	8	Unmodified	_PPVLSVAF_					0	0	0		ENST00000549379.5_1_12:62653800-62653896:-|nuORF	ENST00000549379.5_1_12:62653800-62653896:-|nuORF	ENST00000549379.5_1_12:62653800-62653896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.2452087402344	2	415.244547	828.47454	0.64885	0.00026943	-1.481	-0.00061497	-0.83212	-0.00034554	415.2440003670828	99.721	0.5515	99.721	99.485	100.04	0					46	29	2	0	0	0	0.53771	1	25475	25475		2.8892	0	1	678670			15644	7092	10299	10412	21185	21185					0.05344202845424206
PPWHPYPHPH	10	Unmodified	_PPWHPYPHPH_					0	0	0		ENST00000467160.1_1_19:19757877-19758222:-|nuORF	ENST00000467160.1_1_19:19757877-19758222:-|nuORF	ENST00000467160.1_1_19:19757877-19758222:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.8049926757812	2	632.804157	1263.59376	0.028235	1.7868E-05	1.2068	0.00076367	1.235	0.00078154	632.8048964021656	22.318	0.40066	22.42	22.209	22.61	0.10178					52	33	2	0	0	0	0.47288	1	2035	2035		0.45834	0.057624	1	21453			15645	6644	10300	10413	21186	21186					-0.027492104771681625
PPYPSYPHPI	10	Unmodified	_PPYPSYPHPI_					0	0	0			REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF	REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.3125	2	584.295299	1166.57605	0.38615	0.00022562	-0.52965	-0.00030947	-0.14351	-8.3849E-05	584.2948698854842	45.716	1.44	45.801	44.986	46.426	0.085621					135	54	4	0	0	0	0.44246	1	9061	9061		6.2058	2.2614	1	441070	+		15646	11455	10301	10414	21187	21187					-0.0005797052269826963
PPYWSWKCRWE	11	Unmodified	_PPYWSWKCRWE_					0	0	0			REV__ENST00000359786.9_2_17:1387569-1395801:-|nuORF	REV__ENST00000359786.9_2_17:1387569-1395801:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.23974609375	3	513.23969	1536.69724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.218	1	17.302	16.802	17.802	0.083696								0	0	0	0.34191	1	808	808		0.073264	0.073264	1		+		15647	11533	10302	10415	21188	21188					-0.04964091151668981
PQAALRCCV	9	Unmodified	_PQAALRCCV_					0	0	0			REV__nc|ENSG00000114993|Q9BST9-3|RTKN	REV__nc|ENSG00000114993|Q9BST9-3|RTKN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7412414550781	2	480.741322	959.468092	-0.4884	-0.0002348	-0.63776	-0.0003066	-1.1262	-0.00054139	480.7409677190087	24.166	0.48815	24.166	24.006	24.494	0					81	45	2	0	0	0	0.34646	1	2662	2662		0.6015	0	1	68161	+		15648	8771	10303	10416	21189	21189					-0.013263816492667502
PQEHLIIV	8	Unmodified	_PQEHLIIV_					0	0	0		ENST00000466561.1_1_1:17313027-17318334:-|nuORF;nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2	ENST00000466561.1_1_1:17313027-17318334:-|nuORF	ENST00000466561.1_1_1:17313027-17318334:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.22845458984375	2	474.779285	947.544017	-0.062643	-2.9742E-05	0.34576	0.00016416	0.28312	0.00013442	474.77947668632197	49.944	0.25654	49.944	49.794	50.05	0					10	8	2	0	0	0	0.3576	1	10287	10287		0.79363	0	1	29521			15649	3726	10304	10417	21190	21190					0.06814661794203403
PQELETFSL	9	Unmodified	_PQELETFSL_					0	0	0		ENST00000486331.1_1_22:41716661-41728273:+|nuORF;ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ENST00000486331.1_1_22:41716661-41728273:+|nuORF	ENST00000486331.1_1_22:41716661-41728273:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8154296875	2	532.268947	1062.52334	0.5654	0.00030094	1.2635	0.00067252	1.8289	0.00097346	532.2697525557663	98.767	0.088989	98.767	98.715	98.804	0					6	4	2	0	0	0	0.25699	1	25176	25176		3.5965	0.31518	1	43549			15650	6786	10305	10418	21191	21191					-0.005419733761527823
PQEPQLNL	8	Unmodified	_PQEPQLNL_					0	0	0			REV__GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant	REV__GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7502136230469	2	469.750724	937.486896	0.16801	7.8923E-05	-0.56406	-0.00026497	-0.39605	-0.00018604	469.7503938506121	38.533	0.51172	38.533	38.332	38.844	0					26	18	2	0	0	0	0.53557	1	6880	6880		4.3292	0.38484	1	68173		+	15651	10136	10306	10419	21192	21192					0.01565194517809232
PQFSCLLK	8	Unmodified	_PQFSCLLK_					0	0	0			REV__ENST00000498468.1_1_3:81692126-81695653:-|nuORF	REV__ENST00000498468.1_1_3:81692126-81695653:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.77349853515625	2	468.254588	934.494624	0.21289	9.9686E-05	1.6195	0.00075832	1.8324	0.00085801	468.25530264263057	77.617	1.0627	77.651	77.417	78.48	0.034485					52	36	2	0	0	0	0.3576	1	18749	18749		5.2307	2.6532	1	92144	+		15652	11844	10307	10420	21193	21193					0.024756305137316303
PQGKLTWY	8	Unmodified	_PQGKLTWY_					0	0	0			REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7616271972656	2	496.763635	991.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.807	1	35.885	35.385	36.385	0.078827								0	0	0	0.38822	1	5909	5909		0.69038	0	1		+		15653	9623	10308	10421	21194	21194					0.016620887600765855
PQGSPSDPL	9	Unmodified	_PQGSPSDPL_					0	0	0			REV__ENST00000415380.6_1_12:125263015-125270898:-|nuORF	REV__ENST00000415380.6_1_12:125263015-125270898:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.2190856933594	2	449.219257	896.423961	0.25046	0.00011251	-0.71183	-0.00031977	-0.46137	-0.00020726	449.2188302761883	38.41	0.73183	38.497	38.236	38.967	0.08688					50	26	3	0	0	0	0.25376	1	6661	6661		6.2058	0	1	174300	+		15654	11796	10309	10422	21195	21195					-0.028393712702495577
PQIWRWVLF	9	Unmodified	_PQIWRWVLF_					0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8493041992188	2	622.850576	1243.6866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.006	1	91.006	90.506	91.506	0								0	0	0	0.27613	1	22810	22810		3.9444	2.1002	1		+		15655	10336	10310	10423	21196	21196					0.0745029425620487
PQKTSESTF	9	Unmodified	_PQKTSESTF_					0	0	0			REV__ENSG00000070501|ENST00000265421|POLB	REV__ENSG00000070501|ENST00000265421|POLB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7680053710938	2	512.750921	1023.48729	0.21145	0.00010842	0.19922	0.00010215	0.41067	0.00021057	512.7509709447324	50.278	2.4012	50.278	49.935	52.337	0					152	83	4	0	0	0	0.15282	1	10489	10489		24.021	5.8856	1	3468100	+		15656	8150	10311	10424	21197	21197					-0.023514305529943158
PQLVQQSIP	9	Unmodified	_PQLVQQSIP_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0-5|ARPP21	REV__nc|ENSG00000172995|Q9UBL0-5|ARPP21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.27825927734375	2	505.287474	1008.5604	0.5308	0.00026821	-0.24395	-0.00012326	0.28686	0.00014495	505.287205928236	54.348	0.28143	54.348	54.218	54.499	0					15	11	2	0	0	0	0.30397	1	11678	11678		6.2058	0	1	58001	+		15657	10305	10312	10425	21198	21198					0.056457429602687625
PQMPAPPH	8	Unmodified	_PQMPAPPH_					0	0	0		nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7149658203125	2	437.71563	873.416708	0.3715	0.00016261	-0.93322	-0.00040848	-0.56172	-0.00024587	437.7151183930548	99.699	0.54974	99.742	99.553	100.1	0.042839					55	35	2	0	0	0	0.53817	1	25320	25320		2.5775	0	1	738080			15658	3153	10313	10426	21199	21199					-0.025063823516575212
PQMSMENLV	9	Unmodified	_PQMSMENLV_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3;PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2826538085938	2	524.743728	1047.4729	0.15009	7.8759E-05	1.1704	0.00061416	1.3205	0.00069291	524.7434049140895	38.895	0.40199	38.982	38.817	39.219	0.08688					25	15	2	0	0	0	0.25875	1	6844	6844		1.8442	0	1	42063			15659	869	10314	10427	21200	21200					-0.048935422971680964
PQNRLFHKNG	10	Unmodified	_PQNRLFHKNG_					0	0	0			REV__nc|ENSG00000185664|P40967-3|PMEL	REV__nc|ENSG00000185664|P40967-3|PMEL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1911315917969	3	404.219506	1209.63669	-0.3077	-0.00012438	-0.71402	-0.00028862	-1.0217	-0.000413	404.21918689120116	27.144	0.39949	27.231	26.993	27.393	0.0867					75	27	4	0	0	0	0.31838	1	3279	3279		0.62683	0.35781	1	47949	+		15660	10678	10315	10428	21201	21201					0.04025559580281879
PQNRLFHKNG	10	Unmodified	_PQNRLFHKNG_					0	0	0			REV__nc|ENSG00000185664|P40967-3|PMEL	REV__nc|ENSG00000185664|P40967-3|PMEL	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	404.219506	1209.63669	0.047564	1.9226E-05	-0.9643	-0.00038979	-0.91674	-0.00037056	404.2189421929262	27.257	0.35579	27.257	27.097	27.453	0	0.013229	-0.00014209	NaN	0.62683	67	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59293	+		15661	10678	10315	10428							0.04025559580281879
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2793579101562	2	530.279118	1058.54368	0.18463	9.7905E-05	-0.16956	-8.9916E-05	0.015064	7.9883E-06	530.2790387242712	89.824	0.63158	89.824	89.445	90.077	0					83	23	4	0	0	0	0.0045534	2	22434	22391;22434		88.954	50.803	1	5261400			15662	5750	10316	10429	21202;21203	21203					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2793579101562	2	530.279118	1058.54368	0.19776	0.00010487	-0.17353	-9.2018E-05	0.024228	1.2848E-05	530.2790113682272	89.771	0.64935	89.805	89.437	90.087	0.034065					87	24	5	0	0	0	0.0093779	2	22262	22220;22262		69.105	30.954	1	5698700			15663	5750	10316	10429	21204;21205	21205					0.016752420743159746
PQPLKKLP	8	Unmodified	_PQPLKKLP_					0	0	0		ENST00000399543.1_1_5:43042822-43042996:+|nuORF	ENST00000399543.1_1_5:43042822-43042996:+|nuORF	ENST00000399543.1_1_5:43042822-43042996:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	461.32989501953125	2	460.80002	919.585488	0.1314	6.0547E-05	-0.74447	-0.00034305	-0.61307	-0.0002825	460.79967539353254	110.81	0.033089	110.82	110.8	110.83	0.015678					5	4	2	0	0	0	0.3576	1	28275	28275		2.3027	0	1	199470			15664	6359	10317	10430	21206	21206					0.12247842553506416
PQPSSHPW	8	Unmodified	_PQPSSHPW_					0	0	0			REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF	REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7234191894531	2	468.222134	934.429715	0.71722	0.00033582	2.0682	0.00096837	2.7854	0.0013042	468.2237909670766	81.116	0.87638	81.116	80.813	81.69	0					94	29	5	0	0	0	0.53423	1	19747	19747		5.2307	0	1	1353800	+		15665	12155	10318	10431	21207	21207					-0.04012227967905346
PQQAESLGF	9	Unmodified	_PQQAESLGF_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7693176269531	2	488.740357	975.46616	-0.33833	-0.00016536	3.5997	0.0017593	3.2614	0.001594	488.7404408303145	40.393	0.28065	40.393	40.281	40.562	0					12	9	2	0	0	0	0.25699	1	7423	7423		3.5965	0.31518	1	15407			15666	736	10319	10432	21208	21208					-0.022553958618573233
PQQFRNDNRQ	10	Unmodified	_PQQFRNDNRQ_					0	0	0		SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant	SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.88232421875	3	434.881441	1301.62249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.902	1	92.939	92.439	93.439	0.037369								0	0	0	0.33965	1	23226	23226		0.62683	0	1				15667	3618	10320	10433	21209	21209					-0.01625137638666274
PQQLQQNL	8	Unmodified	_PQQLQQNL_					0	0	0		ENST00000529012.1_1_11:111795026-111796920:+|nuORF;ENSG00000149300|ENST00000278601|C11orf52;ENST00000527286.5_1_11:111789765-111796920:+|nuORF	ENST00000529012.1_1_11:111795026-111796920:+|nuORF	ENST00000529012.1_1_11:111795026-111796920:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.76141357421875	2	484.761623	967.508694	-0.27476	-0.00013319	0.0834	4.0429E-05	-0.19136	-9.2765E-05	484.7616472764448	24.107	0.50973	24.207	24.047	24.557	0.099739					105	48	3	0	0	0	0.53858	1	2507	2507		2.3027	0	1	114030			15668	3397	10321	10434	21210	21210					0.023639992663675002
PQQYMSALL	9	Unmodified	_PQQYMSALL_					0	0	0		ENSG00000096088|ENST00000373025|PGC	ENSG00000096088|ENST00000373025|PGC	ENSG00000096088|ENST00000373025|PGC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2688598632812	2	525.76806	1049.52157	0.21455	0.0001128	-0.32949	-0.00017323	-0.11493	-6.0429E-05	525.7679389192305	55.716	0.85048	55.781	55.402	56.252	0.065128					66	31	3	0	0	0	0.28472	1	12017	12017		8.7454	0.58988	1	234730			15669	1107	10322	10435	21211	21211					-0.0012130566574342083
PQRARAILS	9	Unmodified	_PQRARAILS_					0	0	0		ENST00000494253.1_1_10:71144437-71146246:+|nuORF	ENST00000494253.1_1_10:71144437-71146246:+|nuORF	ENST00000494253.1_1_10:71144437-71146246:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.306640625	2	506.306532	1010.59851	0.4497	0.00022769	1.6519	0.00083639	2.1016	0.0010641	506.3072422035527	92.35	0.44734	92.387	92.223	92.671	0.03653					26	15	2	0	0	0	0.30005	1	23112	23112		6.7232	0.51738	1	150100			15670	6825	10323	10436	21212	21212					0.09363673665598071
PQRCMTSI	8	Unmodified	_PQRCMTSI_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.22601318359375	2	468.225505	934.436457	0.20186	9.4516E-05	0.32073	0.00015017	0.52259	0.00024469	468.225575790522	74.227	0.48085	74.227	74.074	74.555	0					26	17	3	0	0	0	0.20402	1	17692	17692		42.095	42.095	1	162340	+		15671	12633	10324	10437	21213	21213					-0.033383744031993956
PQRCMTSI	8	Unmodified	_PQRCMTSI_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7276916503906	2	468.225505	934.436457	0.388	0.00018167	0.32429	0.00015184	0.7123	0.00033352	468.2255698731575	74.983	0.74503	74.983	74.635	75.38	0					37	27	2	0	0	0	0.20402	2	17924	17924;17980		42.095	42.095	1	173910	+		15672	12633	10324	10437	21214;21215	21214					-0.033383744031993956
PQRCMTSI	8	Unmodified	_PQRCMTSI_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7276916503906	2	468.225505	934.436457	0.388	0.00018167	0.32429	0.00015184	0.7123	0.00033352	468.2255698731575	74.983	0.74503	74.983	74.635	75.38	0					37	27	2	0	0	0	0.31665	1	17924	17924		42.095	42.095	1	173910	+		15673	12633	10324	10437	21216	21216					-0.033383744031993956
PQRCMTSI	8	Unmodified	_PQRCMTSI_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.22515869140625	2	468.225505	934.436457	0.20028	9.3776E-05	0.28518	0.00013353	0.48546	0.00022731	468.2256080528063	74.184	0.60201	74.233	74.071	74.673	0.048546					26	21	2	0	0	0	0.20402	1	17514	17514		42.095	42.095	1	108280	+		15674	12633	10324	10437	21217	21217					-0.033383744031993956
PQRCMTSI	8	Unmodified	_PQRCMTSI_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.2255859375	2	468.225505	934.436457	0.15221	7.127E-05	0.54262	0.00025407	0.69483	0.00032534	468.22575833128474	74.905	0.71727	74.949	74.723	75.44	0.044037					34	25	2	0	0	0	0.20402	2	17741	17741;17791		42.095	42.095	1	184730	+		15675	12633	10324	10437	21218;21219	21218					-0.033383744031993956
PQRCMTSI	8	Unmodified	_PQRCMTSI_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	468.225505	934.436457	0.20186	9.4516E-05	0.32073	0.00015017	0.52259	0.00024469	468.225575790522	74.227	0.48085	74.227	74.074	74.555	0	-0.0030076	1.453E-05	NaN	42.095	26	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162340	+		15676	12633	10324	10437							-0.033383744031993956
PQRCMTSI	8	Unmodified	_PQRCMTSI_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.225505	934.436457	0.20028	9.3776E-05	0.28518	0.00013353	0.48546	0.00022731	468.2256080528063	74.184	0.60201	74.233	74.071	74.673	0.048546	0.0030076	-1.8757E-05	NaN	42.095	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108280	+		15677	12633	10324	10437							-0.033383744031993956
PQRCMTSI	8	Unmodified	_PQRCMTSI_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.225505	934.436457	0.15221	7.127E-05	0.54262	0.00025407	0.69483	0.00032534	468.22575833128474	74.905	0.71727	74.949	74.723	75.44	0.044037	-0.017161	0.00013755	NaN	42.095	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184730	+		15678	12633	10324	10437							-0.033383744031993956
PQRFPWAF	8	Unmodified	_PQRFPWAF_					0	0	0			REV__nc|ENSG00000204256|P25440-3|BRD2	REV__nc|ENSG00000204256|P25440-3|BRD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3094482421875	2	524.771794	1047.52904	0.505	0.00026501	2.9354	0.0015404	3.4404	0.0018054	524.7731308108472	98.749	0.17953	98.749	98.681	98.861	0					10	9	2	0	0	0	0.35759	1	25156	25156		9.3474	0	1	41330	+		15679	10937	10325	10438	21220	21220					0.007172147168375886
PQRKADKA	8	Unmodified	_PQRKADKA_					0	0	0		nc|ENSG00000008323|Q3KR16-2|PLEKHG6;ENSG00000008323|ENST00000684764|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2642517089844	2	457.264333	912.514114	0.50293	0.00022997	-0.22184	-0.00010144	0.28109	0.00012853	457.26415319391543	74.365	1.5564	74.365	74.095	75.652	0					109	58	3	0	0	0	0.53423	1	17768	17768		5.2307	0	1	276670			15680	395	10326	10439	21221	21221					0.054357228488470355
PQSARYLRP	9	Unmodified	_PQSARYLRP_					0	0	0			REV__ENST00000494569.5_1_3:147109809-147110196:-|nuORF	REV__ENST00000494569.5_1_3:147109809-147110196:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.304443359375	2	544.30399	1086.59343	0.32422	0.00017647	0.16197	8.8162E-05	0.48619	0.00026464	544.3041640525284	37.346	0.60864	37.43	37.136	37.744	0.084476					32	21	2	0	0	0	0.26684	1	6359	6359		10.824	0	1	65911	+		15681	12172	10327	10440	21222	21222					0.05359369802999936
PQSARYLRP	9	Unmodified	_PQSARYLRP_					0	0	0			REV__ENST00000494569.5_1_3:147109809-147110196:-|nuORF	REV__ENST00000494569.5_1_3:147109809-147110196:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.261962890625	2	544.30399	1086.59343	0.32422	0.00017647	0.16197	8.8162E-05	0.48619	0.00026464	544.3041640525284	37.346	0.60864	37.43	37.136	37.744	0.084476					32	21	2	0	0	0	0.24791	1	6417	6417		10.074	3.3508	1	65911	+		15682	12172	10327	10440	21223	21223					0.05359369802999936
PQSPTRHP	8	Unmodified	_PQSPTRHP_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|53|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|53|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|53|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	460.7420654296875	2	460.240858	918.467164	0.9187	0.00042283	-3.171	-0.0014594	-2.2523	-0.0010366	460.23862692432493	81.076	0.78764	81.076	80.674	81.461	0					76	26	5	0	0	0	0.53494	1	19820	19820		4.756	1.8668	1	575940			15683	7354	10328	10441	21224	21224					0.0046686329772001045
PQTYGVTHF	9	Unmodified	_PQTYGVTHF_					0	0	0			REV__ENST00000455904.5_2_3:13522657-13522876:+|nuORF	REV__ENST00000455904.5_2_3:13522657-13522876:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2474975585938	2	525.256174	1048.49779	0.26777	0.00014065	4.193	0.0022024	4.4608	0.0023431	525.2582236488381	37.753	0.59903	37.753	37.417	38.017	0					34	20	3	0	0	0	0.27332	1	6561	6561		10.074	2.1638	1	35520	+		15684	11945	10329	10442	21225	21225					-0.024514031078979315
PQVGYKENF	9	Unmodified	_PQVGYKENF_					0	0	0			REV__ENST00000474610.1_1_2:33952107-33952842:-|nuORF	REV__ENST00000474610.1_1_2:33952107-33952842:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2702026367188	2	541.269281	1080.52401	0.20249	0.0001096	1.5308	0.00082856	1.7333	0.00093817	541.2697900909259	89.807	0.51204	89.807	89.505	90.017	0					60	19	4	0	0	0	0.24021	1	22448	22448		13.906	0.86358	1	607880	+		15685	12046	10330	10443	21226	21226					-0.01303133936426093
PQVGYKENF	9	Unmodified	_PQVGYKENF_					0	0	0			REV__ENST00000474610.1_1_2:33952107-33952842:-|nuORF	REV__ENST00000474610.1_1_2:33952107-33952842:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2701416015625	2	541.269281	1080.52401	0.24943	0.00013501	1.3584	0.00073528	1.6079	0.00087029	541.2699304676465	89.781	0.50185	89.816	89.511	90.013	0.034065					44	18	3	0	0	0	0.11547	1	22279	22279		29.082	4.4077	1	652530	+		15686	12046	10330	10443	21227	21227					-0.01303133936426093
PQVIAVPQL	9	Unmodified	_PQVIAVPQL_					0	0	0		ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	ENSG00000171634|ENST00000306378|BPTF	ENSG00000171634|ENST00000306378|BPTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7955627441406	2	482.794935	963.575317	-0.31597	-0.00015255	1.2077	0.00058307	0.89172	0.00043052	482.79591803926684	109.89	0.79562	109.89	109.76	110.56	0					205	118	2	0	0	0	0.3182	1	28279	28279		4.3292	0	1	2364000			15687	4453	10331	10444	21228	21228					0.09207234828284072
PQVRRKLELE	10	Unmodified	_PQVRRKLELE_					0	0	0		nc|ENSG00000249115|O94927-2|HAUS5;ENST00000585968.5_1_19:36103696-36110661:+|nuORF;ENSG00000249115|ENST00000203166|HAUS5	nc|ENSG00000249115|O94927-2|HAUS5	nc|ENSG00000249115|O94927-2|HAUS5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3778076171875	2	634.377686	1266.74082	-0.172	-0.00010911	0.056768	3.6012E-05	-0.11523	-7.3098E-05	634.3778652490715	113.67	0.24229	113.67	113.6	113.85	0					89	35	3	0	0	0	0.47318	1	29090	29090		0.40072	0	1	375340			15688	5677	10332	10445	21229	21229					0.11811841617168284
PQWLYVPF	8	Unmodified	_PQWLYVPF_					0	0	0			REV__ENSG00000135842|ENST00000367511|NIBAN1	REV__ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.8007202148438	2	525.276378	1048.5382	0.15103	7.9334E-05	-0.71683	-0.00037653	-0.5658	-0.0002972	525.2758481596594	52.399	0.39455	52.399	52.19	52.584	0					20	13	2	0	0	0	0.3576	1	11087	11087		7.9102	1.7044	1	56459	+		15689	9221	10333	10446	21230	21230					0.01587563282487281
PRARRRRRL	9	Unmodified	_PRARRRRRL_					0	0	0		ENST00000504087.5_1_4:125633653-125633758:-|nuORF	ENST00000504087.5_1_4:125633653-125633758:-|nuORF	ENST00000504087.5_1_4:125633653-125633758:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.9051513671875	2	618.902863	1235.79117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.45	1	104.48	103.98	104.98	0.034004								0	0	0	0.2927	1	26704	26704		0.52476	0	1				15690	6881	10334	10447	21231	21231					0.18270853576177615
PRCSHLGVF	9	Unmodified	_PRCSHLGVF_					0	0	0		nc|ENSG00000106341|O96001-2|PPP1R17	nc|ENSG00000106341|O96001-2|PPP1R17	nc|ENSG00000106341|O96001-2|PPP1R17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.23834228515625	2	508.260736	1014.50692	-0.23332	-0.00011859	2.1425	0.001089	1.9092	0.00097037	508.2618123249563	26.119	0.19845	26.119	26.011	26.209	0					19	14	2	0	0	0	0.25579	1	3166	3166		4.3292	0	1	14107			15691	7479	10335	10448	21232	21232					0.00024666976776188676
PRDKWLASGW	10	Unmodified	_PRDKWLASGW_					0	0	0			REV__ENSG00000183397|ENST00000329493|TEKTIP1	REV__ENSG00000183397|ENST00000329493|TEKTIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.8475341796875	2	608.317097	1214.61964	0.63054	0.00038357	-0.94927	-0.00057746	-0.31873	-0.00019389	608.3159677839736	88.034	1.5544	88.034	87.455	89.009	0					92	59	3	0	0	0	0.31731	1	21913	21913		6.2058	0.47393	1	204970	+		15692	10596	10336	10449	21233	21233					0.02091638974457055
PRDTLVDTV	9	Unmodified	_PRDTLVDTV_					0	0	0			REV__ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant	REV__ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7478332519531	2	508.274564	1014.53457	0.010137	5.1526E-06	0.031051	1.5782E-05	0.041188	2.0935E-05	508.2744839754053	45.209	0.38869	45.297	45.089	45.477	0.08754					25	14	2	0	0	0	0.2446	1	8690	8690		11.64	0	1	72380	+		15693	10652	10337	10450	21234	21234					0.02788848718000736
PRFGRLPPL	9	Unmodified	_PRFGRLPPL_					0	0	0		ENST00000360635.7_1_2:9563104-9563296:-|nuORF	ENST00000360635.7_1_2:9563104-9563296:-|nuORF	ENST00000360635.7_1_2:9563104-9563296:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.822021484375	2	526.821818	1051.62908	-0.072447	-3.8167E-05	0.46503	0.00024499	0.39259	0.00020682	526.822203134767	109.8	0.35228	109.8	109.76	110.12	0					92	51	2	0	0	0	0.3182	1	28266	28266		4.3292	0	1	2143100			15694	6156	10338	10451	21235	21235					0.10533452050663072
PRFGRLPPL	9	Unmodified	_PRFGRLPPL_					0	0	0		ENST00000360635.7_1_2:9563104-9563296:-|nuORF	ENST00000360635.7_1_2:9563104-9563296:-|nuORF	ENST00000360635.7_1_2:9563104-9563296:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	526.821818	1051.62908	0.20104	0.00010591	0.29812	0.00015706	0.49916	0.00026297	526.8221365993562	109.8	0.19859	109.82	109.78	109.98	0.017242	0.0096716	-0.00012671	NaN	4.3292	47	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1584500			15695	6156	10338	10451							0.10533452050663072
PRGAPIRRLD	10	Unmodified	_PRGAPIRRLD_					0	0	0		ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8431396484375	2	575.843813	1149.67307	0.29197	0.00016813	-0.933	-0.00053726	-0.64103	-0.00036913	575.8431195914848	83.637	1.1014	83.658	83.194	84.295	0.021744					85	39	3	0	0	0	0.45945	1	20406	20406		2.9952	1.151	1	337530			15696	3794	10339	10452	21236	21236					0.10422436476983421
PRGAPIRRLD	10	Unmodified	_PRGAPIRRLD_					0	0	0		ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	575.843813	1149.67307	0.57799	0.00033283	-1.2385	-0.00071319	-0.66053	-0.00038036	575.8429331641388	83.706	0.8259	83.706	83.279	84.105	0	0.024023	-0.0001934	NaN	2.9952	70	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273140			15697	3794	10339	10452							0.10422436476983421
PRGKTRAG	8	Unmodified	_PRGKTRAG_					0	0	0			REV__ENST00000536214.1_2_17:656373-656511:+|nuORF	REV__ENST00000536214.1_2_17:656373-656511:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.7517395019531	2	421.751393	841.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.3	1	71.359	70.859	71.859	0.058578								0	0	0	0.38822	1	16648	16648		7.2892	2.0586	1		+		15698	12384	10340	10453	21237	21237					0.061148733972345326
PRHRRLHR	8	Unmodified	_PRHRRLHR_					0	0	0		ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.359619140625	2	564.342107	1126.66966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.68	1	115.68	115.18	116.18	0								0	0	0	0.38822	1	29485	29485		0.69038	0	1				15699	3017	10341	10454	21238	21238					0.11139231213633138
PRHTLATVF	9	Unmodified	_PRHTLATVF_					0	0	0			REV__nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8	REV__nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.28515625	2	521.295633	1040.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.374	1	80.398	79.898	80.898	0.023605								0	0	0	0.16627	1	19417	19417		23.148	3.8914	1		+		15700	8538	10342	10455	21239	21239					0.0580486891703913
PRIKKQLRVLA	11	Unmodified	_PRIKKQLRVLA_					0	0	0		nc|ENSG00000270379|A2RTY3-3|HEATR9;ENSG00000270379|ENST00000604834|HEATR9	nc|ENSG00000270379|A2RTY3-3|HEATR9	nc|ENSG00000270379|A2RTY3-3|HEATR9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.7340393066406	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.501	1	79.527	79.027	80.027	0.026436								0	0	0	0.34185	1	19151	19151		0.094841	0	1				15701	5737	10343	10456	21240	21240					0.22417277055819795
PRIVTFKIFE	10	Unmodified	_PRIVTFKIFE_					0	0	0			REV__ENSG00000196275|ENST00000451013|GTF2IRD2	REV__ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8743286132812	2	625.368798	1248.72304	-0.10201	-6.3796E-05	-0.82551	-0.00051625	-0.92752	-0.00058004	625.8703061021394	104.51	0.046288	104.51	104.47	104.52	0					5	3	2	0	0	0	0.31838	1	26894	26894		1.4819	0.15237	1	89678	+		15702	10347	10344	10457	21241	21241					0.10863126362255571
PRKDENESSAP	11	Unmodified	_PRKDENESSAP_					0	0	0		ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.53216552734375	3	410.530074	1228.56839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.825	1	61.898	61.398	62.398	0.073421								0	0	0	0.33044	1	13776	13776		4.1166	0.52957	1				15703	2582	10345	10458	21242	21242					-0.03674774580895246
PRKDYWDFL	9	Unmodified	_PRKDYWDFL_					0	0	0		nc|ENSG00000188282|Q6ZNE9-3|RUFY4;ENSG00000188282|ENST00000697321|RUFY4	nc|ENSG00000188282|Q6ZNE9-3|RUFY4	nc|ENSG00000188282|Q6ZNE9-3|RUFY4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3111572265625	2	620.31148	1238.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.04	1	101.09	100.59	101.59	0.042839								0	0	0	0.2927	1	25709	25709		0.52476	0	1				15704	5150	10346	10459	21243	21243					-0.0013518311968709895
PRKGQRTALPA	11	Unmodified	_PRKGQRTALPA_					0	0	0			REV__ENSG00000125965|ENST00000374369|GDF5	REV__ENSG00000125965|ENST00000374369|GDF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8563232421875	2	597.856921	1193.69929	0.19829	0.00011855	-1.1233	-0.00067156	-0.92499	-0.00055301	597.8561514598564	90.337	0.56506	90.337	90.118	90.683	0					40	22	2	0	0	0	0.40693	1	22622	22622		2.7352	0	1	161130	+		15705	8980	10347	10460	21244	21244					0.11018705648439209
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.85986328125	2	641.859326	1281.7041	-0.1154	-7.4071E-05	0.81775	0.00052488	0.70235	0.00045081	641.8598545032421	107.63	0.093994	107.63	107.56	107.65	0					38	11	6	0	0	0	0.38777	1	27787	27787		7.1017	2.2047	1	110180000			15706	1014	10348	10461	21245	21245					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8572387695312	2	641.859326	1281.7041	-0.11861	-7.6128E-05	-3.429	-0.0022009	-3.5476	-0.002277	641.8563883459437	108	0.18155	108	107.9	108.09	0					41	24	2	0	0	0	0.36299	1	27856	27856		10.8	3.6978	1	10178000			15707	1014	10348	10461	21246	21246					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8579711914062	2	641.859326	1281.7041	-0.11879	-7.6243E-05	-0.45051	-0.00028916	-0.56929	-0.00036541	641.8583514391603	108.17	0.38789	108.17	108.08	108.46	0					75	53	2	0	0	0	0.36299	5	27885	27885;27896;27916;27953;27960		10.8	3.6978	1	13546000			15708	1014	10348	10461	21247;21248;21249;21250;21251	21247					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.858642578125	2	641.859326	1281.7041	-0.11877	-7.6231E-05	0.00076657	4.9203E-07	-0.118	-7.5739E-05	641.8587171947001	108.54	0.2524	108.54	108.46	108.72	0					53	37	2	0	0	0	0.36299	3	27987	27987;28005;28016		10.8	3.6978	1	5690800			15709	1014	10348	10461	21252;21253;21254	21252					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8587646484375	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.76	1	107.76	107.26	108.26	0								0	0	0	0.31149	1	27810	27810		10.8	3.6978	1				15710	1014	10348	10461	21255	21255					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8591918945312	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.89	1	107.89	107.39	108.39	0								0	0	0	0.31149	1	27834	27834		10.8	3.6978	1				15711	1014	10348	10461	21256	21256					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.85888671875	2	641.859326	1281.7041	0.19031	0.00012215	-0.72408	-0.00046475	-0.53377	-0.0003426	641.8585663250115	107.63	0.11417	107.66	107.57	107.69	0.022224					54	16	5	0	0	0	0.36299	1	27574	27574		10.8	3.6978	1	110940000			15712	1014	10348	10461	21257	21257					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8585815429688	2	641.859326	1281.7041	0.19325	0.00012404	-2.6332	-0.0016901	-2.4399	-0.0015661	641.857096153471	107.81	0.20387	107.83	107.74	107.95	0.022224					43	29	2	0	0	0	0.36299	3	27596	27596;27611;27627		10.8	3.6978	1	23461000			15713	1014	10348	10461	21258;21259;21260	21258					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8594970703125	2	641.859326	1281.7041	0.19311	0.00012395	0.12118	7.7782E-05	0.3143	0.00020173	641.8589757879532	108.71	0.085411	108.73	108.67	108.76	0.019402					16	11	2	0	0	0	0.38777	1	27813	27813		7.1017	0	1	2760800			15714	1014	10348	10461	21261	21261					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8587646484375	2	641.859326	1281.7041	0.19334	0.0001241	-1.6103	-0.0010336	-1.417	-0.00090952	641.8577036453134	108.8	0.14047	108.82	108.76	108.9	0.019402					35	19	2	0	0	0	0.38777	1	27840	27840		7.1017	2.2047	1	3866200			15715	1014	10348	10461	21262	21262					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8631591796875	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.4	1	108.43	107.93	108.93	0.022224								0	0	0	0.32197	1	27746	27746		7.1017	2.2047	1				15716	1014	10348	10461	21263	21263					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	641.859326	1281.7041	-0.11865	-7.6156E-05	0.41273	0.00026491	0.29408	0.00018876	641.8588541109092	108.77	0.18002	108.77	108.72	108.9	0	0.018125	0.00014833	NaN	7.1017	53	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2061900			15717	1014	10348	10461							0.07451545000549231
PRLLRPLLGFL	11	Unmodified	_PRLLRPLLGFL_					0	0	0		ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.9193725585938	2	647.921532	1293.82851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.83	1	114.83	114.33	115.33	0								0	0	0	0.34113	1	29311	29311		0.35063	0.043601	1				15718	2975	10349	10462	21264	21264					0.1933508727854587
PRLTKEKLDF	10	Unmodified	_PRLTKEKLDF_					0	0	0		ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.24371337890625	3	416.243317	1245.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.347	1	46.433	45.933	46.933	0.085617								0	0	0	0.33952	1	9082	9082		0.77653	0.078866	1				15719	819	10350	10463	21265	21265					0.09509634494247621
PRMPCCCNPF	10	Unmodified	_PRMPCCCNPF_					0	0	0		ENST00000372390.8_1_X:106956815-106956884:-|nuORF	ENST00000372390.8_1_X:106956815-106956884:-|nuORF	ENST00000372390.8_1_X:106956815-106956884:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2318115234375	2	584.23195	1166.44935	0.87807	0.00051299	-0.20755	-0.00012126	0.67052	0.00039174	584.2317270521846	98.091	0.68734	98.133	97.916	98.603	0.041931					106	35	5	0	0	0	0.45443	1	24875	24875		3.9444	1.3669	1	428670			15720	6216	10351	10464	21266	21266					-0.1272200260698355
PRMPCCCNPF	10	Unmodified	_PRMPCCCNPF_					0	0	0		ENST00000372390.8_1_X:106956815-106956884:-|nuORF	ENST00000372390.8_1_X:106956815-106956884:-|nuORF	ENST00000372390.8_1_X:106956815-106956884:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	584.23195	1166.44935	0.76557	0.00044727	-0.16438	-9.6037E-05	0.60119	0.00035123	584.2317192827953	98.171	0.65388	98.171	97.929	98.583	0	0.018966	2.8624E-05	NaN	3.9444	121	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	793650			15721	6216	10351	10464							-0.1272200260698355
PRNGPGES	8	Unmodified	_PRNGPGES_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-13|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.2040100097656	2	407.196116	812.37768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.663	1	82.684	82.184	83.184	0.021744								0	0	0	0.38822	1	20112	20112		2.0598	0	1		+		15722	12852	10352	10465	21267	21267					-0.036013913816532295
PRNSHLQQN	9	Unmodified	_PRNSHLQQN_					0	0	0		ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2785034179688	2	547.278503	1092.54245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.358	1	74.406	73.906	74.906	0.048546								0	0	0	0.23593	1	17581	17581		12.241	1.4167	1				15723	4676	10353	10466	21268	21268					-0.00011579241868275858
PRPGRPRRPRR	11	Unmodified	_PRPGRPRRPRR_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.6238098144531	3	467.62386	1399.84975	0.0027886	1.304E-06	-0.24331	-0.00011378	-0.24052	-0.00011247	467.6236326670244	105.3	0.76451	105.3	105.04	105.81	0					201	78	4	0	0	0	0.41309	3	27087	27087;27125;27162		1.3296	0	1	491420			15724	5960	10354	10467	21269;21270;21271	21269					0.16581910150603107
PRPGRPRRPRR	11	Unmodified	_PRPGRPRRPRR_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.6236877441406	3	467.62386	1399.84975	0.10227	4.7824E-05	-0.31076	-0.00014532	-0.20849	-9.7496E-05	467.62358203820514	105.23	0.6	105.26	105.09	105.69	0.034004					202	66	4	0	0	0	0.41309	2	26938	26938;26997		1.3296	0	1	368130			15725	5960	10354	10467	21272;21273	21272					0.16581910150603107
PRPPTPNAAA	10	Unmodified	_PRPPTPNAAA_					0	0	0			REV__ENST00000446533.7_2_15:41248228-41248366:+|nuORF	REV__ENST00000446533.7_2_15:41248228-41248366:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2691345214844	2	496.269616	990.524678	-0.096641	-4.796E-05	-0.59379	-0.00029468	-0.69044	-0.00034264	496.26922937259513	24.295	0.29062	24.295	24.158	24.448	0					39	26	2	0	0	0	0.44246	1	2637	2637		6.2058	0	1	17875	+		15726	11906	10355	10468	21274	21274					0.029037055032631542
PRQCLFLCW	9	Unmodified	_PRQCLFLCW_					0	0	0		ENST00000340700.9_1_14:88693854-88707099:-|nuORF	ENST00000340700.9_1_14:88693854-88707099:-|nuORF	ENST00000340700.9_1_14:88693854-88707099:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2847900390625	2	583.285897	1164.55724	0.34496	0.00020121	-0.30989	-0.00018075	0.035073	2.0458E-05	583.2849149129312	39.685	0.38371	39.774	39.634	40.018	0.088562					16	13	2	0	0	0	0.34646	1	7106	7106		0.6015	0	1	26340			15727	6085	10356	10469	21275	21275					-0.018455466897421502
PRQMRWKHA	9	Unmodified	_PRQMRWKHA_					0	0	0			REV__ENST00000381348.4_2_22:42353689-42353893:+|nuORF	REV__ENST00000381348.4_2_22:42353689-42353893:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3252563476562	2	605.324734	1208.63491	0.67236	0.000407	-1.1865	-0.00071824	-0.51418	-0.00031124	605.324251543958	37.868	0.44943	37.952	37.716	38.165	0.084476					21	15	2	0	0	0	0.25989	1	6513	6513		0.52476	0	1	27295	+		15728	10978	10357	10470	21276	21276					0.038942272906751896
PRQVRRLKAGA	11	Unmodified	_PRQVRRLKAGA_					0	0	0			REV__nc|ENSG00000196405|Q9UI08-4|EVL	REV__nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3934936523438	2	626.391462	1250.76837	-0.24493	-0.00015342	4.301	0.0026941	4.0561	0.0025407	626.3940878746371	108.54	0.19343	108.54	108.43	108.62	0					47	28	2	0	0	0	0.40578	1	27994	27994		2.9952	1.3426	1	6375700	+		15729	10816	10358	10471	21277	21277					0.15301789668023957
PRRAGRGLLQ	10	Unmodified	_PRRAGRGLLQ_					0	0	0		ENST00000370544.9_1_1:87794601-87794751:+|nuORF	ENST00000370544.9_1_1:87794601-87794751:+|nuORF	ENST00000370544.9_1_1:87794601-87794751:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3444213867188	2	562.343981	1122.67341	0.60547	0.00034048	0.15763	8.8643E-05	0.7631	0.00042913	562.3440175133268	84.663	0.7478	84.686	84.463	85.211	0.023132					70	41	3	0	0	0	0.46656	1	20771	20771		1.6526	1.6526	1	866810			15730	6204	10359	10472	21278	21278					0.11697856196838075
PRRKMKLKAH	10	Unmodified	_PRRKMKLKAH_					0	0	0		ENST00000369535.4_1_1:115249837-115249885:-|nuORF	ENST00000369535.4_1_1:115249837-115249885:-|nuORF	ENST00000369535.4_1_1:115249837-115249885:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.3619384765625	2	632.892783	1263.77101	0.061158	3.8707E-05	0.1396	8.8351E-05	0.20076	0.00012706	632.8925863949787	103.61	0.35775	103.61	103.39	103.74	0					60	37	2	0	0	0	0.31853	1	26586	26586		0.40072	0	1	146590			15731	6195	10360	10473	21279	21279					0.14967921801348893
PRRKMKLKAH	10	Unmodified	_PRRKMKLKAH_					0	0	0		ENST00000369535.4_1_1:115249837-115249885:-|nuORF	ENST00000369535.4_1_1:115249837-115249885:-|nuORF	ENST00000369535.4_1_1:115249837-115249885:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	632.892783	1263.77101	0.36711	0.00023234	-0.25772	-0.00016311	0.10939	6.9233E-05	632.8923520528846	103.53	0.27573	103.57	103.42	103.7	0.03791	-0.02056	-0.00033426	NaN	0.40072	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203200			15732	6195	10360	10473							0.14967921801348893
PRRLGSQEST	10	Unmodified	_PRRLGSQEST_					0	0	0		ENST00000425916.4_1_10:77163018-77167299:+|nuORF	ENST00000425916.4_1_10:77163018-77167299:+|nuORF	ENST00000425916.4_1_10:77163018-77167299:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.80029296875	2	565.799269	1129.58398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.336	1	17.419	16.919	17.919	0.083696								0	0	0	0.33905	1	833	833		1.3295	0.25807	1				15733	6468	10361	10474	21280	21280					0.024375567267952647
PRRQWWRPW	9	Unmodified	_PRRQWWRPW_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.75567626953125	3	456.579257	1366.71594	0.12478	5.6973E-05	-0.71766	-0.00032767	-0.59287	-0.00027069	456.9132097623361	69.323	0.11198	69.385	69.308	69.42	0.062126					5	3	2	0	0	0	0.25964	1	16036	16036		1.0715	0	1	36802			15734	1364	10362	10475	21281	21281					0.047252513250668926
PRRRPAPGLS	10	Unmodified	_PRRRPAPGLS_					0	0	0		ENST00000609519.5_1_19:15509475-15509532:-|nuORF	ENST00000609519.5_1_19:15509475-15509532:-|nuORF	ENST00000609519.5_1_19:15509475-15509532:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.830322265625	2	553.830706	1105.64686	0.65873	0.00036482	-1.4551	-0.00080588	-0.79638	-0.00044106	553.8297237833789	97.329	0.26225	97.329	97.176	97.438	0					20	10	2	0	0	0	0.46746	1	24767	24767		1.4819	0.28856	1	77277			15735	7323	10363	10476	21282	21282					0.09826167305527633
PRRRPAPGLS	10	Unmodified	_PRRRPAPGLS_					0	0	0		ENST00000609519.5_1_19:15509475-15509532:-|nuORF	ENST00000609519.5_1_19:15509475-15509532:-|nuORF	ENST00000609519.5_1_19:15509475-15509532:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	553.830706	1105.64686	0.76437	0.00042333	-1.5234	-0.00084371	-0.75903	-0.00042037	553.8298189340439	97.318	0.51802	97.359	97.096	97.614	0.040855	0.014678	-1.4397E-05	NaN	1.4819	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73579			15736	7323	10363	10476							0.09826167305527633
PRSRCVLTR	9	Unmodified	_PRSRCVLTR_					0	0	0			REV__ENSG00000163885|ENST00000352312|CFAP100	REV__ENSG00000163885|ENST00000352312|CFAP100	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7951049804688	2	544.311292	1086.60803	-0.26811	-0.00014594	-0.80538	-0.00043838	-1.0735	-0.00058431	544.3106760379851	40.586	0.30658	40.586	40.481	40.787	0					22	10	3	0	0	0	0.24929	1	7458	7458		9.3831	1.473	1	52963	+		15737	9959	10364	10477	21283	21283					0.0681911867945928
PRSRRRYVRGR	11	Unmodified	_PRSRRRYVRGR_					0	0	0		ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.9588928222656	3	486.95902	1457.85523	0.28813	0.00014031	-0.11073	-5.3922E-05	0.1774	8.6385E-05	486.9588551046137	96.81	1.8447	96.85	96.136	97.981	0.039772					130	94	2	0	0	0	0.41713	1	24569	24569		0.40827	0.40827	1	432080			15738	4183	10365	10478	21284	21284					0.14461588942413073
PRSTDEECVL	10	Unmodified	_PRSTDEECVL_					0	0	0			REV__ENST00000325167.9_1_17:78973043-78973379:+|nuORF	REV__ENST00000325167.9_1_17:78973043-78973379:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7664794921875	2	574.766245	1147.51794	0.054017	3.1047E-05	-0.31913	-0.00018342	-0.26511	-0.00015238	574.7660063026418	21.841	0.44052	21.943	21.74	22.181	0.10178					104	47	3	0	0	0	0.45945	1	1825	1825		2.9952	0.69251	1	67406	+		15739	11408	10366	10479	21285	21285					-0.049920202302701
PRSTDEECVL	10	Unmodified	_PRSTDEECVL_					0	0	0			REV__ENST00000325167.9_1_17:78973043-78973379:+|nuORF	REV__ENST00000325167.9_1_17:78973043-78973379:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7767333984375	2	574.766245	1147.51794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.136	1	22.238	21.738	22.738	0.10178								0	0	0	0.33905	1	1940	1940		1.3295	0.63916	1		+		15740	11408	10366	10479	21286	21286					-0.049920202302701
PRTAVHTGN	9	Unmodified	_PRTAVHTGN_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.75164794921875	2	476.75159	951.488627	-0.088426	-4.2157E-05	1.1791	0.00056212	1.0906	0.00051996	476.75194858769856	51.86	0.62329	51.86	51.682	52.305	0					38	21	3	0	0	0	0.27332	1	10927	10927		10.074	5.7447	1	177620	+		15741	9372	10367	10480	21287	21287					0.010942483264329894
PRTLALRERL	10	Unmodified	_PRTLALRERL_					0	0	0		ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.9226379394531	3	408.922689	1223.74624	0.649	0.00026539	-1.3184	-0.00053911	-0.66937	-0.00027372	408.92208151333847	99.812	0.59024	99.812	99.743	100.33	0					67	32	3	0	0	0	0.44671	1	25489	25489		5.4027	0	1	483020			15742	2732	10368	10481	21288	21288					0.14331565199586294
PRTLALRERL	10	Unmodified	_PRTLALRERL_					0	0	0		ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.9222412109375	3	408.922689	1223.74624	0.30641	0.0001253	-0.86332	-0.00035303	-0.5569	-0.00022773	408.92230135074533	99.815	0.76914	99.858	99.754	100.52	0.042839					85	44	3	0	0	0	0.45632	1	25351	25351		3.5871	0	1	357710			15743	2732	10368	10481	21289	21289					0.14331565199586294
PRVAHVSGFI	10	Unmodified	_PRVAHVSGFI_					0	0	0			REV__PTX3|p.P198A|1|0.29|ENSG00000163661|chr3:157442425-157442425|C/G|missense_variant	REV__PTX3|p.P198A|1|0.29|ENSG00000163661|chr3:157442425-157442425|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2770385742188	2	541.808908	1081.60326	0.023931	1.2966E-05	0.51291	0.0002779	0.53685	0.00029087	542.3114183208334	72.662	0.2189	72.662	72.499	72.718	0					12	7	2	0	0	0	0.31689	1	17198	17198		8.1555	0.8663	1	40384	+		15744	12967	10369	10482	21290	21290					0.06572557808362944
PRVLDAMLPYL	11	Unmodified	_PRVLDAMLPYL_					0	0	0		ENST00000421540.1_1_20:34280185-34287249:-|nuORF;nc|ENSG00000244005|Q9Y697-2|NFS1;nc|ENSG00000244005|Q9Y697-3|NFS1;ENSG00000244005|ENST00000374092|NFS1	ENST00000421540.1_1_20:34280185-34287249:-|nuORF	ENST00000421540.1_1_20:34280185-34287249:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3599853515625	2	644.360116	1286.70568	0.076936	4.9575E-05	0.46806	0.0003016	0.54499	0.00035117	644.3602902403627	91.21	1.7297	91.245	90.555	92.285	0.035446					128	63	3	0	0	0	0.40453	1	22706	22706		3.2813	0.54611	1	431490			15745	5665	10370	10483	21291	21291					0.07379462764970413
PRVPWRWQ	8	Unmodified	_PRVPWRWQ_					0	0	0		ENST00000595335.5_1_19:57874916-57879933:+|nuORF	ENST00000595335.5_1_19:57874916-57879933:+|nuORF	ENST00000595335.5_1_19:57874916-57879933:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8074340820312	2	562.809242	1123.60393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.831	1	18.831	18.331	19.331	0								0	0	0	0.38822	1	1216	1216		0.69038	0.16561	1				15746	7282	10371	10484	21292	21292					0.047073972480802695
PRVQDGKPVIL	11	Unmodified	_PRVQDGKPVIL_					0	0	0		ENST00000550033.5_1_12:53701834-53703447:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS	ENST00000550033.5_1_12:53701834-53703447:-|nuORF	ENST00000550033.5_1_12:53701834-53703447:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3562622070312	2	611.36933	1220.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.705	1	88.738	88.238	89.238	0.032257								0	0	0	0.32823	1	21950	21950		4.897	1.9018	1				15747	1089	10372	10485	21293	21293					0.1225734073118474
PRWISMHR	8	Unmodified	_PRWISMHR_					0	0	0		ENST00000366628.9_1_1:233119139-233119391:+|nuORF	ENST00000366628.9_1_1:233119139-233119391:+|nuORF	ENST00000366628.9_1_1:233119139-233119391:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7880859375	2	541.787453	1081.56035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.836	1	20.836	20.336	21.336	0								0	0	0	0.38822	1	1703	1703		2.3027	0	1				15748	6169	10373	10486	21294	21294					0.022834644792965264
PRWKRVVGW	9	Unmodified	_PRWKRVVGW_					0	0	0		nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-3|HCFC1	nc|ENSG00000172534|P51610-3|HCFC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.2908935546875	2	592.345992	1182.67743	0.21895	0.0001297	-1.6237	-0.0009618	-1.4048	-0.0008321	592.3451578206789	49.591	0.42402	49.591	49.452	49.876	0					30	14	3	0	0	0	0.25809	1	10152	10152		2.3027	0.24298	1	88939			15749	4501	10374	10487	21295	21295					0.0933994569056722
PRYRSYVKSY	10	Unmodified	_PRYRSYVKSY_					0	0	0			REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22	REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.86297607421875	3	440.234933	1317.68297	0.39074	0.00017202	-0.35161	-0.00015479	0.039132	1.7227E-05	440.2347286248377	37.038	0.94999	37.038	36.833	37.783	0					73	35	3	0	0	0	0.31852	1	6585	6585		0.69767	0	1	84877	+		15750	9110	10375	10488	21296	21296					0.036835796917102925
PSAGWIMSCL	10	Unmodified	_PSAGWIMSCL_					0	0	0			REV__ENSG00000165370|ENST00000651716|GPR101	REV__ENSG00000165370|ENST00000651716|GPR101	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3133544921875	2	532.748813	1063.48307	0.51469	0.0002742	1.2338	0.00065728	1.7484	0.00093148	532.7495999349272	79.441	0.43291	79.441	79.188	79.621	0					30	14	3	0	0	0	0.28878	1	19280	19280		25.399	2.2509	1	301190	+		15751	10035	10376	10489	21297	21297					-0.04612934571900951
PSALEPSLRLP	11	Unmodified	_PSALEPSLRLP_					0	0	0			REV__ENST00000361866.7_1_21:47424117-47424327:+|nuORF	REV__ENST00000361866.7_1_21:47424117-47424327:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8035278320312	2	590.340238	1178.66592	0.3968	0.00023425	2.9696	0.0017531	3.3664	0.0019873	590.3421742216157	53.417	0.5719	53.417	53.188	53.76	0					38	23	2	0	0	0	0.31013	1	11288	11288		8.7454	1.1365	1	90806	+		15752	11543	10377	10490	21298	21298					0.08373659085896179
PSAPSKALP	9	Unmodified	_PSAPSKALP_					0	0	0			REV__ENST00000481082.1_1_1:157512505-157514867:-|nuORF	REV__ENST00000481082.1_1_1:157512505-157514867:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.25115966796875	2	434.25036	866.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.287	1	60.287	59.787	60.787	0								0	0	0	0.27782	1	13444	13444		3.5965	0	1		+		15753	12087	10378	10491	21299	21299					0.04758399868762808
PSARLSVNP	9	Unmodified	_PSARLSVNP_					0	0	0		ENST00000263277.7_1_19:48216758-48219882:+|nuORF	ENST00000263277.7_1_19:48216758-48219882:+|nuORF	ENST00000263277.7_1_19:48216758-48219882:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.76409912109375	2	470.764166	939.513779	-0.29508	-0.00013891	-0.28361	-0.00013352	-0.5787	-0.00027243	470.76409350340174	30.15	0.32028	30.15	30.006	30.327	0					26	14	3	0	0	0	0.32375	1	4347	4347		3.5965	0	1	28715			15754	5878	10379	10492	21300	21300					0.04160303128992382
PSARLSVNP	9	Unmodified	_PSARLSVNP_					0	0	0		ENST00000263277.7_1_19:48216758-48219882:+|nuORF	ENST00000263277.7_1_19:48216758-48219882:+|nuORF	ENST00000263277.7_1_19:48216758-48219882:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	470.764166	939.513779	-0.29508	-0.00013891	-0.28361	-0.00013352	-0.5787	-0.00027243	470.76409350340174	30.15	0.32028	30.15	30.006	30.327	0	-0.0019743	1.8263E-05	NaN	3.5965	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28715			15755	5878	10379	10492							0.04160303128992382
PSDAVVSSYST	11	Unmodified	_PSDAVVSSYST_					0	0	0			REV__ENSG00000088038|ENST00000221232|CNOT3	REV__ENSG00000088038|ENST00000221232|CNOT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.759033203125	2	556.758943	1111.50333	0.40015	0.00022279	0.77911	0.00043378	1.1793	0.00065656	556.7593232416122	58.108	0.41803	58.108	57.799	58.217	0					34	14	3	0	0	0	0.27921	1	12761	12761		20.415	0	1	296520	+		15756	8284	10380	10493	21301	21301					-0.047957691067495034
PSDIECMRYI	10	Unmodified	_PSDIECMRYI_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.7788696289062	2	613.780841	1225.54713	-0.22177	-0.00013612	-2.6285	-0.0016133	-2.8502	-0.0017494	613.7792460753412	44.03	0.75662	44.119	43.901	44.658	0.088924					37	25	2	0	0	0	0.46083	1	8457	8457		2.7352	0.89096	1	71179			15757	2536	10381	10494	21302	21302					-0.05662199205607976
PSEAATKRQ	9	Unmodified	_PSEAATKRQ_					0	0	0			REV__ENSG00000226792|ENST00000563710|C13orf42	REV__ENSG00000226792|ENST00000563710|C13orf42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2640075683594	2	494.26453	986.514508	0.086475	4.2742E-05	-0.74116	-0.00036633	-0.65468	-0.00032359	494.26420026197445	33.685	0.25495	33.685	33.548	33.803	0					11	8	2	0	0	0	0.33978	1	5411	5411		1.4819	0.68827	1	25719	+		15758	11034	10382	10495	21303	21303					0.020710977780368012
PSEAISWLSL	10	Unmodified	_PSEAISWLSL_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7926025390625	2	551.792589	1101.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.88	1	103.91	103.41	104.41	0.03791								0	0	0	0.32971	1	26544	26544		12.241	0	1		+		15759	9920	10383	10496	21304	21304					0.02390305894869016
PSEPGFLTS	9	Unmodified	_PSEPGFLTS_					0	0	0		nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENST00000481170.1_1_2:220370207-220370552:+|nuORF	nc|ENSG00000144591|Q96IJ6-2|GMPPA	nc|ENSG00000144591|Q96IJ6-2|GMPPA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.1014404296875	2	467.729458	933.444362	0.049286	2.3052E-05	-1.4549	-0.00068051	-1.4056	-0.00065746	467.72833589875296	51.406	0.14431	51.476	51.359	51.503	0.069874					8	5	2	0	0	0	0.25875	1	10600	10600		1.8442	1.0506	1	33666			15760	7521	10384	10497	21305	21305					-0.025022006104450156
PSEPTLNIGF	10	Unmodified	_PSEPTLNIGF_					0	0	0			REV__nc|ENSG00000081985|Q99665-2|IL12RB2	REV__nc|ENSG00000081985|Q99665-2|IL12RB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.78515625	2	537.776939	1073.53933	0.40728	0.00021902	-0.53782	-0.00028923	-0.13055	-7.0204E-05	537.7767100707918	58.377	0.37266	58.448	58.348	58.721	0.070477					16	12	2	0	0	0	0.35104	1	12772	12772		17.113	0.1706	1	233280	+		15761	8244	10385	10498	21306	21306					0.005497328607589225
PSFQQKQE	8	Unmodified	_PSFQQKQE_					0	0	0			REV__ENSG00000163840|ENST00000296161|DTX3L	REV__ENSG00000163840|ENST00000296161|DTX3L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2568664550781	2	496.245806	990.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.611	1	39.611	39.111	40.111	0								0	0	0	0.3878	1	7176	7176		14.838	1.3304	1		+		15762	9958	10386	10499	21307	21307					-0.01855993487561136
PSFYAERFFKF	11	Unmodified	_PSFYAERFFKF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2435607910156	3	480.243317	1437.70812	0.10373	4.9818E-05	2.1368	0.0010262	2.2405	0.001076	480.2454801046261	67.973	0.67435	67.973	67.794	68.469	0					46	24	3	0	0	0	0.36536	1	15774	15774		10.527	2.241	1	181960			15763	5069	10387	10500	21308	21308					0.00677634494263657
PSFYAERFFKF	11	Unmodified	_PSFYAERFFKF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2434387207031	3	480.243317	1437.70812	0.26541	0.00012746	1.88	0.00090286	2.1454	0.0010303	480.2450894097921	68	0.52087	68.063	67.812	68.333	0.063507					37	18	3	0	0	0	0.33915	1	15601	15601		13.535	6.0579	1	187620			15764	5069	10387	10500	21309	21309					0.00677634494263657
PSGAWYYVPL	10	Unmodified	_PSGAWYYVPL_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.7894287109375	2	576.78985	1151.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.227	1	48.307	47.807	48.807	0.080029								0	0	0	0.33092	1	9645	9645		10.824	0	1			+	15765	216	10388	10501	21310	21310					-0.004573728969489821
PSGPHHHH	8	Unmodified	_PSGPHHHH_					0	0	0			REV__ENST00000306353.7_2_2:85829070-85829145:-|nuORF	REV__ENST00000306353.7_2_2:85829070-85829145:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.20941162109375	2	453.209892	904.405232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.326	1	90.36	89.86	90.86	0.034065								0	0	0	0.38822	1	22446	22446		0.79363	0	1		+		15766	11359	10389	10502	21311	21311					-0.050794433307714826
PSGPPVLGALL	11	Unmodified	_PSGPPVLGALL_					0	0	0			REV__ENSG00000141376|ENST00000407086|BCAS3	REV__ENSG00000141376|ENST00000407086|BCAS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2638244628906	2	510.808042	1019.60153	0.42219	0.00021566	-0.3735	-0.00019079	0.048689	2.4871E-05	510.8078325366643	63.494	0.49325	63.565	63.365	63.859	0.071018					31	16	3	0	0	0	0.28998	1	14274	14274		22.736	2.3217	1	220680	+		15767	9395	10390	10503	21312	21312					0.09251503999769284
PSHLADEH	8	Unmodified	_PSHLADEH_					0	0	0		nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB;ASXL2-DTNB|7|fusion;ASXL2-DTNB|3|fusion;ASXL2-DTNB|6|fusion;ASXL2-DTNB|4|fusion;ASXL2-DTNB|2|fusion	nc|ENSG00000138101|O60941-6|DTNB	nc|ENSG00000138101|O60941-6|DTNB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2099304199219	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.258	1	83.258	82.758	83.758	0								0	0	0	0.38822	1	20455	20455		2.3027	0.24298	1				15768	2892	10391	10504	21313	21313					-0.05213122210193433
PSICEVEFLS	10	Unmodified	_PSICEVEFLS_					0	0	0			REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7954711914062	2	562.270632	1122.52671	0.2684	0.00015091	-1.4585	-0.00082004	-1.1901	-0.00066913	562.2702885077244	87.264	0.38046	87.264	87.095	87.476	0					30	14	3	0	0	0	0.31496	1	21674	21674		13.906	0	1	163740	+		15769	9758	10392	10505	21314	21314					-0.029650465937947956
PSICEVEFLS	10	Unmodified	_PSICEVEFLS_					0	0	0			REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.79541015625	2	562.270632	1122.52671	0.25117	0.00014123	-1.5994	-0.00089927	-1.3482	-0.00075804	562.2701798293087	87.184	0.55903	87.211	86.999	87.558	0.027573					40	22	3	0	0	0	0.30541	1	21494	21494		19.257	0	1	173650	+		15770	9758	10392	10505	21315	21315					-0.029650465937947956
PSITSCRGL	9	Unmodified	_PSITSCRGL_					0	0	0			REV__ENST00000301788.11_1_11:62529034-62529276:+|nuORF	REV__ENST00000301788.11_1_11:62529034-62529276:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.7129211425781	2	467.244752	932.474951	-0.15662	-7.3181E-05	-0.27221	-0.00012719	-0.42884	-0.00020037	467.2445323430792	32.611	0.43467	32.611	32.47	32.905	0					30	21	2	0	0	0	0.25174	1	5142	5142		7.2892	2.0586	1	29714	+		15771	11349	10393	10506	21316	21316					0.006012545029761895
PSLGVEFIS	9	Unmodified	_PSLGVEFIS_					0	0	0		ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7579650878906	2	474.755475	947.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.636	1	54.636	54.136	55.136	0								0	0	0	0.21527	1	11726	11726		15.847	3.3156	1				15772	5558	10394	10507	21317	21317					0.020549628033450063
PSLPSGHLFLL	11	Unmodified	_PSLPSGHLFLL_					0	0	0			REV__ENST00000496634.2_1_11:62341301-62341418:-|nuORF	REV__ENST00000496634.2_1_11:62341301-62341418:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2151489257812	2	590.839874	1179.66519	0.79324	0.00046868	0.35657	0.00021067	1.1498	0.00067935	590.840059853706	80.368	0.49319	80.392	80.248	80.741	0.023605					43	17	3	0	0	0	0.30908	1	19413	19413		16.149	3.9084	1	292410	+		15773	12188	10395	10508	21318	21318					0.082548644368444
PSLSCLYGPYF	11	Unmodified	_PSLSCLYGPYF_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.2388305664062	2	623.794275	1245.574	-0.086524	-5.3973E-05	-2.0619	-0.0012862	-2.1484	-0.0013402	623.79296165112	53.07	0.35231	53.07	52.921	53.273	0					19	13	2	0	0	0	0.3108	1	11291	11291		2.9952	1.151	1	75538	+		15774	8458	10396	10509	21319	21319					-0.03896767322794403
PSLYDRAVT	9	Unmodified	_PSLYDRAVT_					0	0	0			REV__nc|ENSG00000164347|Q969S9-3|GFM2	REV__nc|ENSG00000164347|Q969S9-3|GFM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7951354980469	2	511.269281	1020.52401	0.19411	9.9242E-05	-0.49529	-0.00025323	-0.30118	-0.00015399	511.26891284966996	50.108	0.64122	50.108	49.794	50.435	0					45	22	3	0	0	0	0.20194	1	10332	10332		24.021	0	1	118520	+		15775	9994	10397	10510	21320	21320					0.0145686606357458
PSLYFAAQY	9	Unmodified	_PSLYFAAQY_					0	0	0			REV__ENST00000466855.1_1_7:150774852-150776190:-|nuORF	REV__ENST00000466855.1_1_7:150774852-150776190:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7615966796875	2	530.260925	1058.5073	-0.047818	-2.5356E-05	3.9049	0.0020706	3.8571	0.0020452	530.2631549755063	45.94	0.2816	45.94	45.757	46.039	0					14	9	2	0	0	0	0.2298	1	9089	9089		16.942	2.104	1	78910	+		15776	12001	10398	10511	21321	21321					-0.019616348223962632
PSNPECLLLV	10	Unmodified	_PSNPECLLLV_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7899780273438	2	542.788992	1083.56343	0.52359	0.0002842	0.47851	0.00025973	1.0021	0.00054393	542.7891857262438	101.43	0.55463	101.47	101.18	101.73	0.042656					52	34	2	0	0	0	0.44938	1	25893	25893		4.897	1.6157	1	75857			15777	3675	10399	10512	21322	21322					0.024992500227881465
PSPGLKQS	8	Unmodified	_PSPGLKQS_					0	0	0		ENST00000468308.1_1_2:172378863-172407640:+|nuORF	ENST00000468308.1_1_2:172378863-172407640:+|nuORF	ENST00000468308.1_1_2:172378863-172407640:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.91534423828125	2	407.226885	812.439217	0.5014	0.00020419	-0.25415	-0.0001035	0.24726	0.00010069	407.2265851570282	37.792	0.41164	37.792	37.577	37.988	0					22	13	2	0	0	0	0.35759	1	6599	6599		10.824	2.9138	1	31558			15778	6653	10400	10513	21323	21323					0.025495403176250875
PSPGLKQS	8	Unmodified	_PSPGLKQS_					0	0	0		ENST00000468308.1_1_2:172378863-172407640:+|nuORF	ENST00000468308.1_1_2:172378863-172407640:+|nuORF	ENST00000468308.1_1_2:172378863-172407640:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	407.226885	812.439217	0.11377	4.633E-05	0.027384	1.1151E-05	0.14115	5.7481E-05	407.22678483245414	37.626	0.42807	37.711	37.505	37.933	0.084476	-0.040853	0.00013582	NaN	10.824	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38617			15779	6653	10400	10513							0.025495403176250875
PSPSSSSSCL	10	Unmodified	_PSPSSSSSCL_					0	0	0		ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.7193298339844	2	476.208032	950.401511	-0.29445	-0.00014022	-3.6594	-0.0017426	-3.9539	-0.0018829	476.2064662757553	43.48	0.36499	43.569	43.453	43.818	0.088924					15	13	2	0	0	0	0.31794	1	8207	8207		3.5965	1.2938	1	32897			15780	4715	10401	10514	21324	21324					-0.07567338730143547
PSPTAALRP	9	Unmodified	_PSPTAALRP_					0	0	0			REV__nc|ENSG00000093217|O75191-2|XYLB	REV__nc|ENSG00000093217|O75191-2|XYLB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.8977966308594	2	455.261259	908.507966	-0.40436	-0.00018409	0.16363	7.4496E-05	-0.24073	-0.00010959	455.26127927295596	42.137	0.35181	42.227	42.018	42.37	0.089764					21	13	2	0	0	0	0.25644	1	7797	7797		3.9444	0	1	34379	+		15781	8334	10402	10515	21325	21325					0.05005204617327763
PSPTFVPPTF	10	Unmodified	_PSPTFVPPTF_					0	0	0		ENST00000495068.5_1_15:91478554-91479518:+|nuORF;ENST00000557212.5_1_15:91478554-91479518:+|nuORF	ENST00000495068.5_1_15:91478554-91479518:+|nuORF	ENST00000495068.5_1_15:91478554-91479518:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.284912109375	2	545.2844	1088.55425	0.63524	0.00034639	0.97595	0.00053217	1.6112	0.00087855	545.2847270741923	80.855	0.6983	80.878	80.531	81.229	0.023605					53	23	3	0	0	0	0.34138	1	19512	19512		18.146	18.146	1	437590			15782	6831	10403	10516	21326	21326					0.013512247287508217
PSRRRPRHRVP	11	Unmodified	_PSRRRPRHRVP_					0	0	0		ENST00000371933.7_1_1:47184401-47184626:-|nuORF	ENST00000371933.7_1_1:47184401-47184626:-|nuORF	ENST00000371933.7_1_1:47184401-47184626:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.95135498046875	3	471.951865	1412.83377	0.15732	7.425E-05	-0.21481	-0.00010138	-0.057488	-2.7132E-05	471.9516706246827	101.05	0.77176	101.05	100.74	101.51	0					149	45	5	0	0	0	0.4167	2	25833	25833;25929		0.50596	0.50596	1	383550			15783	6211	10404	10517	21327;21328	21327					0.14386203913704776
PSRRRPRHRVP	11	Unmodified	_PSRRRPRHRVP_					0	0	0		ENST00000371933.7_1_1:47184401-47184626:-|nuORF	ENST00000371933.7_1_1:47184401-47184626:-|nuORF	ENST00000371933.7_1_1:47184401-47184626:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.9517822265625	3	471.951865	1412.83377	0.18609	8.7827E-05	-0.26787	-0.00012642	-0.081773	-3.8593E-05	471.951673046573	101	0.64104	101.04	100.81	101.45	0.042839					124	39	4	0	0	0	0.4167	1	25731	25731		0.50596	0	1	363870			15784	6211	10404	10517	21329	21329					0.14386203913704776
PSSAPSLPHSL	11	Unmodified	_PSSAPSLPHSL_					0	0	0			REV__ENST00000465752.1_1_22:24237017-24237290:+|nuORF	REV__ENST00000465752.1_1_22:24237017-24237290:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7892456054688	2	546.787838	1091.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.966	1	42.056	41.556	42.556	0.089764								0	0	0	0.33436	1	7759	7759		2.7352	0	1		+		15785	11992	10405	10518	21330	21330					0.019005376093446102
PSSPVRFPAL	10	Unmodified	_PSSPVRFPAL_					0	0	0			REV__chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	REV__chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.787353515625	2	535.803291	1069.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.944	1	72.996	72.496	73.496	0.052574								0	0	0	0.33443	1	17150	17150		6.7232	1.4925	1		+		15786	7795	10406	10519	21331	21331					0.06001735714221468
PSSVPTPTNV	10	Unmodified	_PSSVPTPTNV_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1;ENST00000478333.1_1_6:137528098-137540521:-|nuORF	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.24114990234375	2	499.761289	997.508025	-0.078597	-3.928E-05	-0.042135	-2.1057E-05	-0.12073	-6.0337E-05	499.76129276100556	31.551	0.38123	31.551	31.412	31.793	0					27	16	2	0	0	0	0.31595	1	4753	4753		11.495	2.1116	1	31811			15787	496	10407	10520	21332	21332					0.009171598266561887
PSTETGHVL	9	Unmodified	_PSTETGHVL_					0	0	0			REV__chr11:70160982-70161161|258|15.26|0.05|8.32|+|1|TE_info:MIR,MIR_dup115192,MIR,SINE,donor,+,70160846,70160982|None,ANO1|2	REV__chr11:70160982-70161161|258|15.26|0.05|8.32|+|1|TE_info:MIR,MIR_dup115192,MIR,SINE,donor,+,70160846,70160982|None,ANO1|2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.74017333984375	2	470.740357	939.46616	-0.10788	-5.0784E-05	0.29841	0.00014048	0.19053	8.9692E-05	470.7403656725568	39.299	1.1243	39.388	39.131	40.256	0.088562					102	45	4	0	0	0	0.29576	1	7056	7056		7.2892	2.5332	1	704030	+		15788	7778	10408	10521	21333	21333					-0.005993958618546458
PSTWPLDEL	9	Unmodified	_PSTWPLDEL_					0	0	0			REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7767333984375	2	529.263665	1056.51278	0.43849	0.00023208	4.4421	0.0023511	4.8806	0.0025831	529.7675925220301	74.46	0.19673	74.509	74.396	74.593	0.048538					9	6	2	0	0	0	0.25174	1	17602	17602		7.2892	1.5288	1	90244	+		15789	9890	10409	10522	21334	21334					-0.013219560305742561
PSVDLNQIL	9	Unmodified	_PSVDLNQIL_					0	0	0		CON__A2VCT4	CON__A2VCT4	CON__A2VCT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.77935791015625	2	499.779482	997.544411	0.17243	8.6178E-05	0.21773	0.00010882	0.39016	0.000195	499.7795533286649	72.46	0.47984	72.516	72.296	72.776	0.055939					39	16	3	0	0	0	0.2125	2	16979	16979;17024		17.113	0	1	347850		+	15790	206	10410	10523	21335;21336	21335					0.04554036723379795
PSVHPSPLLL	10	Unmodified	_PSVHPSPLLL_					0	0	0			REV__ENST00000536693.1_2_17:65989185-65989404:-|nuORF	REV__ENST00000536693.1_2_17:65989185-65989404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.313720703125	2	530.313492	1058.61243	0.22664	0.00012019	0.36945	0.00019592	0.59609	0.00031612	530.3135991574352	73.992	1.1624	73.992	73.661	74.823	0					89	42	3	0	0	0	0.37232	1	17697	17697		14.838	0	1	2169400	+		15791	12387	10411	10524	21337	21337					0.08546906374067476
PSWAYSTLLF	10	Unmodified	_PSWAYSTLLF_					0	0	0		ENST00000409185.5_1_2:131806791-131806905:-|nuORF	ENST00000409185.5_1_2:131806791-131806905:-|nuORF	ENST00000409185.5_1_2:131806791-131806905:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8026123046875	2	592.802957	1183.59136	0.38126	0.00022601	-0.6065	-0.00035954	-0.22524	-0.00013352	592.8023743314087	76	1.8751	76	75.268	77.144	0					207	89	3	0	0	0	0.21218	3	18325	18325;18377;18458		32.305	3.1079	1	3505900			15792	6390	10412	10525	21338;21339;21340	21338					0.006908962745228564
PSWAYSTLLF	10	Unmodified	_PSWAYSTLLF_					0	0	0		ENST00000409185.5_1_2:131806791-131806905:-|nuORF	ENST00000409185.5_1_2:131806791-131806905:-|nuORF	ENST00000409185.5_1_2:131806791-131806905:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8026123046875	2	592.802957	1183.59136	0.36903	0.00021876	-0.50652	-0.00030027	-0.13749	-8.1503E-05	592.8024008581962	75.83	1.8908	75.875	75.297	77.188	0.044037					214	88	3	0	0	0	0.21218	3	18149	18149;18199;18278		32.305	4.9457	1	3174100			15793	6390	10412	10525	21341;21342;21343	21341					0.006908962745228564
PSWGSPGGFTL	11	Unmodified	_PSWGSPGGFTL_					0	0	0		ENST00000301019.8_1_16:88874828-88874996:+|nuORF	ENST00000301019.8_1_16:88874828-88874996:+|nuORF	ENST00000301019.8_1_16:88874828-88874996:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2672119140625	2	553.269281	1104.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.259	1	28.341	27.841	28.841	0.082134								0	0	0	0.32709	1	3659	3659		5.2969	0.066215	1				15794	5975	10413	10526	21344	21344					-0.02407133936435457
PSWTWWPF	8	Unmodified	_PSWTWWPF_					0	0	0		ENST00000273814.7_1_4:953005-953860:-|nuORF	ENST00000273814.7_1_4:953005-953860:-|nuORF	ENST00000273814.7_1_4:953005-953860:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.30810546875	2	553.758352	1105.50215	0.51147	0.00028323	0.28253	0.00015645	0.794	0.00043968	553.7584432583017	94.563	0.37157	94.601	94.37	94.742	0.038086					18	14	2	0	0	0	0.35759	1	23752	23752		5.2307	0.90143	1	123990			15795	5919	10414	10527	21345	21345					-0.046378938943462344
PSYLFYYRA	9	Unmodified	_PSYLFYYRA_					0	0	0		ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7974243164062	2	590.295299	1178.57605	0.34996	0.00020658	1.2254	0.00072332	1.5753	0.0009299	590.2958576206638	17.396	0.12	17.48	17.421	17.541	0.083694					19	13	2	0	0	0	0.33704	1	842	842		1.8442	0.51471	1	12543			15796	3387	10415	10528	21346	21346					-0.00609970522691583
PTDDASVPL	9	Unmodified	_PTDDASVPL_					0	0	0			REV__ENST00000486875.1_1_20:5107738-5156066:+|nuORF	REV__ENST00000486875.1_1_20:5107738-5156066:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.72650146484375	2	457.726915	913.439277	-0.078947	-3.6136E-05	-0.49154	-0.00022499	-0.57048	-0.00026113	457.7266736335742	45.574	0.34142	45.574	45.388	45.729	0					17	11	2	0	0	0	0.29576	1	8994	8994		7.2892	0	1	50332	+		15797	8417	10416	10529	21347	21347					-0.020905044730398004
PTDDASVPL	9	Unmodified	_PTDDASVPL_					0	0	0			REV__ENST00000486875.1_1_20:5107738-5156066:+|nuORF	REV__ENST00000486875.1_1_20:5107738-5156066:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	457.726915	913.439277	-0.078947	-3.6136E-05	-0.49154	-0.00022499	-0.57048	-0.00026113	457.7266736335742	45.574	0.34142	45.574	45.388	45.729	0	-0.0071622	-0.00015433	NaN	7.2892	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50332	+		15798	8417	10416	10529							-0.020905044730398004
PTDSCPLYLN	10	Unmodified	_PTDSCPLYLN_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8192138671875	2	561.760432	1121.50631	0.45695	0.00025669	2.1443	0.0012046	2.6012	0.0014613	561.7615029661788	62.773	0.44935	62.773	62.575	63.025	0					25	15	3	0	0	0	0.31456	1	14258	14258		14.838	3.198	1	177090			15799	5578	10417	10530	21348	21348					-0.04958217253602015
PTFSLSSFTF	10	Unmodified	_PTFSLSSFTF_					0	0	0		ENST00000339142.6_2_17:77020254-77040169:+|nuORF	ENST00000339142.6_2_17:77020254-77040169:+|nuORF	ENST00000339142.6_2_17:77020254-77040169:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7647705078125	2	567.279315	1132.54408	0.54813	0.00031094	0.070645	4.0076E-05	0.61877	0.00035102	567.2793818832082	85.499	0.7674	85.524	85.293	86.061	0.025169					47	30	2	0	0	0	0.30541	1	20933	20933		19.257	7.6167	1	206930			15800	6081	10418	10531	21349	21349					-0.016893829964601537
PTFTPLPVL	9	Unmodified	_PTFTPLPVL_					0	0	0		ENST00000548943.1_1_12:106565027-106566212:+|nuORF	ENST00000548943.1_1_12:106565027-106566212:+|nuORF	ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7920837402344	2	492.791861	983.569169	0.51521	0.00025389	-0.28137	-0.00013865	0.23384	0.00011524	492.79168222475914	96.853	0.55042	96.892	96.657	97.207	0.039764					56	26	3	0	0	0	0.29576	1	24466	24466		7.2892	0	1	422370			15801	7091	10419	10532	21350	21350					0.07672716596744067
PTFYTETL	8	Unmodified	_PTFYTETL_					0	0	0			REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2407531738281	2	486.239658	970.464763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.242	1	60.315	59.815	60.815	0.073421								0	0	0	0.38822	1	13295	13295		8.5933	3.3626	1		+		15802	12555	10420	10533	21351	21351					-0.021650299506063675
PTGHHVLVSW	10	Unmodified	_PTGHHVLVSW_					0	0	0		nc|ENSG00000105339|A2RUS2-3|DENND3	nc|ENSG00000105339|A2RUS2-3|DENND3	nc|ENSG00000105339|A2RUS2-3|DENND3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2976684570312	2	566.79854	1131.58253	0.25745	0.00014592	0.6547	0.00037108	0.91215	0.00051701	566.7990532003511	106.05	0.10857	106.08	106	106.11	0.029739					20	13	2	0	0	0	0.31794	1	27133	27133		1.4819	0	1	41791			15803	7476	10421	10534	21352	21352					0.021999674287144444
PTHTAWPSWN	10	Unmodified	_PTHTAWPSWN_					0	0	0			REV__chr1:17409194-17412122|185|14.32|0.75|4.25|-|1|RCC2,RCC2|1	REV__chr1:17409194-17412122|185|14.32|0.75|4.25|-|1|RCC2,RCC2|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7755737304688	2	598.777805	1195.54106	-0.11388	-6.8189E-05	-4.0233	-0.0024091	-4.1372	-0.0024773	599.2771759375437	32.802	0.25498	32.802	32.675	32.93	0					16	10	2	0	0	0	0.46827	1	5129	5129		1.3295	0.13619	1	22751	+		15804	7765	10422	10535	21353	21353					-0.04889213330602615
PTIFCLVIL	9	Unmodified	_PTIFCLVIL_					0	0	0		HERVH-int_dup116|chr1:68390966-68391185:+|1.2073324984693294|0.0154755330925948|6.29|435.0|6|3|sense	HERVH-int_dup116|chr1:68390966-68391185:+|1.2073324984693294|0.0154755330925948|6.29|435.0|6|3|sense	HERVH-int_dup116|chr1:68390966-68391185:+|1.2073324984693294|0.0154755330925948|6.29|435.0|6|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8037109375	2	509.803914	1017.59328	0.6029	0.00030736	-0.59728	-0.00030449	0.0056207	2.8654E-06	509.80361026517267	83.873	0.6352	83.873	83.519	84.154	0					37	21	2	0	0	0	0.31136	1	20642	20642		5.2307	5.2307	1	183850			15805	7351	10423	10536	21354	21354					0.08518233758763927
PTKARRPS	8	Unmodified	_PTKARRPS_					0	0	0		ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7722473144531	2	456.772326	911.530098	0.85464	0.00039038	-0.73105	-0.00033392	0.1236	5.6455E-05	456.7719197423629	84.83	0.67796	84.83	84.633	85.311	0					76	26	4	0	0	0	0.53026	1	20985	20985		7.9102	0.62092	1	1440200			15806	5683	10424	10537	21355	21355					0.07079429085752054
PTKDDLDFDL	10	Unmodified	_PTKDDLDFDL_					0	0	0		tr|U7SRB0|U7SRB0_FUSNUSmallribosomalsubunitproteinuS4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsDPE=3SV=1	tr|U7SRB0|U7SRB0_FUSNUSmallribosomalsubunitproteinuS4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsDPE=3SV=1	tr|U7SRB0|U7SRB0_FUSNUSmallribosomalsubunitproteinuS4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsDPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3433837890625	2	589.782418	1177.55028	0.47774	0.00028176	0.41659	0.0002457	0.89432	0.00052746	589.7835283807426	88.953	0.074585	88.985	88.959	89.034	0.032257					5	3	2	0	0	0	0.31747	1	22021	22021		5.7319	0	1	33237			15807	13536	10425	10538	21356	21356					-0.03138909555605096
PTKELIDK	8	Unmodified	_PTKELIDK_					0	0	0			REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.28790283203125	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.781	1	89.781	89.281	90.281	0								0	0	0	0.38822	1	22435	22435		4.3292	0	1		+		15808	13077	10426	10539	21357	21357					0.06502938211701803
PTKLNTRQ	8	Unmodified	_PTKLNTRQ_					0	0	0			REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF	REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2774353027344	2	479.277441	956.540328	0.16345	7.8337E-05	0.11031	5.2868E-05	0.27376	0.00013121	479.27738708472776	78.766	3.0918	78.766	77.899	80.99	0					356	107	4	0	0	0	0.53279	1	19512	19512		6.2058	1.4498	1	1643400	+		15809	11447	10427	10540	21358	21358					0.060319920203255606
PTKLNTRQ	8	Unmodified	_PTKLNTRQ_					0	0	0			REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF	REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2776184082031	2	479.277441	956.540328	0.10733	5.1439E-05	0.10607	5.0836E-05	0.2134	0.00010228	479.2773625245644	76.7	0.89496	76.739	76.313	77.207	0.03923					80	32	3	0	0	0	0.53666	1	18210	18210		3.5965	0	1	425500	+		15810	11447	10427	10540	21359	21359					0.060319920203255606
PTKLNTRQ	8	Unmodified	_PTKLNTRQ_					0	0	0			REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF	REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.27777099609375	2	479.277441	956.540328	0.098532	4.7224E-05	0.19499	9.3454E-05	0.29352	0.00014068	479.27740589104303	78.777	3.1544	78.807	77.792	80.946	0.030159					352	111	4	0	0	0	0.53118	2	19418	19418;19465		7.2892	0	1	1861400	+		15811	11447	10427	10540	21360;21361	21360					0.060319920203255606
PTKPNRRVRK	10	Unmodified	_PTKPNRRVRK_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3934326171875	2	626.391462	1250.76837	0.28304	0.00017729	2.8894	0.0018099	3.1724	0.0019872	626.3925998752686	108.47	0.25002	108.49	108.45	108.7	0.022232					72	36	3	0	0	0	0.45794	1	27798	27798		3.2813	0.28607	1	3099700			15812	1366	10428	10541	21362	21362					0.15301789668023957
PTKVALALL	9	Unmodified	_PTKVALALL_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	463.3083190917969	2	463.307678	924.600803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.1	1	112.11	111.61	112.61	0.014595								0	0	0	0.26267	1	28584	28584		6.7232	1.9672	1				15813	1105	10429	10542	21363	21363					0.13548709350698118
PTKVSRHA	8	Unmodified	_PTKVSRHA_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;SRRM2|p.A921Efs*27|1|0.11|ENSG00000167978|chr16:2763289-2763290|-/AACAAAACTGGAGGCTTCAAACTTC|frameshift_variant	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	448.2589416503906	2	448.259051	894.503549	0.4655	0.00020866	-0.32859	-0.0001473	0.1369	6.1368E-05	448.2588057174568	84.81	0.69587	84.833	84.595	85.291	0.023132					86	32	4	0	0	0	0.53026	1	20783	20783		7.9102	0	1	1870200			15814	4247	10430	10543	21364	21364					0.05207740194418875
PTLFDDGQN	9	Unmodified	_PTLFDDGQN_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7639465332031	2	503.727446	1005.44034	-0.37839	-0.0001906	0.12358	6.2253E-05	-0.2548	-0.00012835	503.72765328938794	42.819	0.34647	42.819	42.599	42.946	0					15	11	2	0	0	0	0.20004	1	8161	8161		23.148	6.2061	1	26048	+		15815	8675	10431	10544	21365	21365					-0.06216290104134714
PTLLAEFLG	9	Unmodified	_PTLLAEFLG_					0	0	0			REV__ENSG00000100116|ENST00000248924|GCAT	REV__ENSG00000100116|ENST00000248924|GCAT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2810363769531	2	480.773668	959.532783	0.24454	0.00011757	0.68139	0.00032759	0.92593	0.00044517	480.7738380369808	92.112	0.23229	92.112	91.958	92.19	0					11	8	2	0	0	0	0.25174	1	23139	23139		7.2892	0	1	45028	+		15816	8371	10432	10545	21366	21366					0.05139839700052562
PTLVTYIIT	9	Unmodified	_PTLVTYIIT_					0	0	0			REV__ENSG00000173679|ENST00000309623|OR1L1	REV__ENSG00000173679|ENST00000309623|OR1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.28948974609375	2	510.802426	1019.5903	0.40451	0.00020662	-0.38059	-0.00019441	0.023915	1.2216E-05	510.80227936744546	91.387	0.49854	91.387	91.237	91.735	0					31	18	3	0	0	0	0.22344	1	22946	22946		15.847	0	1	407850	+		15817	10330	10433	10546	21367	21367					0.08128681905600388
PTLVTYIIT	9	Unmodified	_PTLVTYIIT_					0	0	0			REV__ENSG00000173679|ENST00000309623|OR1L1	REV__ENSG00000173679|ENST00000309623|OR1L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.28955078125	2	510.802426	1019.5903	0.40451	0.00020662	-0.38059	-0.00019441	0.023915	1.2216E-05	510.80227936744546	91.387	0.49854	91.387	91.237	91.735	0					31	18	3	0	0	0	0.23598	1	22903	22903		15.847	0	1	407850	+		15818	10330	10433	10546	21368	21368					0.08128681905600388
PTPEVTTKSW	10	Unmodified	_PTPEVTTKSW_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2972412109375	2	573.295496	1144.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.484	1	54.549	54.049	55.049	0.065128								0	0	0	0.33528	1	11542	11542		5.7319	1.4026	1		+		15819	9481	10434	10547	21369	21369					0.00993404406517584
PTPGARVF	8	Unmodified	_PTPGARVF_					0	0	0		nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.7373352050781	2	422.73742	843.460287	0.12375	5.2312E-05	0.24991	0.00010565	0.37365	0.00015796	422.73740456007977	50.59	0.49829	50.663	50.414	50.913	0.07312					35	17	3	0	0	0	0.41225	1	10352	10352		24.674	0	1	161100			15820	7579	10435	10548	21370	21370					0.03229550417142946
PTPGCLDVGL	10	Unmodified	_PTPGCLDVGL_					0	0	0		ENST00000409690.3_1_3:196435554-196438869:-|nuORF	ENST00000409690.3_1_3:196435554-196438869:-|nuORF	ENST00000409690.3_1_3:196435554-196438869:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2471923828125	2	486.24696	970.479368	0.31032	0.00015089	-0.029439	-1.4315E-05	0.28088	0.00013658	486.2468519988807	69.997	1.6211	69.997	69.379	71.001	0					106	58	3	0	0	0	0.41688	1	16277	16277		10.074	0	1	231780			15821	6397	10436	10549	21371	21371					-0.007052810741242865
PTQENSNKI	9	Unmodified	_PTQENSNKI_					0	0	0			REV__ENSG00000174405|ENST00000442234|LIG4	REV__ENSG00000174405|ENST00000442234|LIG4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7616577148438	2	515.76182	1029.50909	-0.089969	-4.6403E-05	0.16335	8.425E-05	0.073382	3.7847E-05	515.7617434341034	27.524	0.57986	27.524	27.297	27.876	0					81	45	2	0	0	0	0.24533	1	3531	3531		12.241	2.1667	1	319740	+		15822	10346	10437	10550	21372	21372					-0.004486258044153146
PTQGPDRFAA	10	Unmodified	_PTQGPDRFAA_					0	0	0			REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2655029296875	2	530.26453	1058.51451	0.32849	0.00017419	1.209	0.00064111	1.5375	0.00081529	530.2651885437842	37.205	0.25838	37.29	37.162	37.42	0.084476					12	9	2	0	0	0	0.44496	1	6330	6330		5.7319	1.4026	1	32938	+		15823	12176	10438	10551	21373	21373					-0.012409022219571852
PTQGPDRFAA	10	Unmodified	_PTQGPDRFAA_					0	0	0			REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	530.26453	1058.51451	0.27636	0.00014654	0.88178	0.00046758	1.1581	0.00061412	530.2653618818481	37.3	0.22379	37.3	37.194	37.417	0	0.0050867	-0.00021935	NaN	5.7319	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33120	+		15824	12176	10438	10551							-0.012409022219571852
PTSFLSLLI	9	Unmodified	_PTSFLSLLI_					0	0	0			REV__nc|ENSG00000094841|Q96BW1-3|UPRT	REV__nc|ENSG00000094841|Q96BW1-3|UPRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7973327636719	2	495.797143	989.579734	0.61743	0.00030612	0.019022	9.4309E-06	0.63645	0.00031555	495.7968990078833	99.422	0.41356	99.465	99.24	99.654	0.042839					63	26	3	0	0	0	0.092418	1	25267	25267		34.102	0	1	524390	+		15825	8336	10439	10552	21374	21374					0.08452699251199647
PTTAVATVSI	10	Unmodified	_PTTAVATVSI_					0	0	0		ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2740783691406	2	480.274032	958.533512	-0.50606	-0.00024305	0.59504	0.00028578	0.08898	4.2735E-05	480.27417445602623	40.463	0.47785	40.463	40.237	40.714	0					43	16	3	0	0	0	0.078033	1	7403	7403		49.933	0.37871	1	255400			15826	1465	10440	10553	21375	21375					0.05258634349092972
PTVIVLELL	9	Unmodified	_PTVIVLELL_					0	0	0		ENST00000606070.1_1_6:108279003-108279531:+|nuORF	ENST00000606070.1_1_6:108279003-108279531:+|nuORF	ENST00000606070.1_1_6:108279003-108279531:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.8205871582031	2	498.820618	995.626684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.72	1	103.76	103.26	104.26	0.03791								0	0	0	0.22204	1	26500	26500		14.838	0	1				15827	7309	10441	10554	21376	21376					0.1286955880232199
PVATSVKEVI	10	Unmodified	_PVATSVKEVI_					0	0	0		nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4	nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.8107299804688	2	521.810782	1041.60701	0.4758	0.00024828	-0.15607	-8.1437E-05	0.31973	0.00016684	521.810583870323	53.858	0.41656	53.858	53.682	54.098	0					32	14	3	0	0	0	0.19399	1	11483	11483		34.402	0	1	291270			15828	1060	10442	10555	21377	21377					0.0878718279154782
PVCNGCDDL	9	Unmodified	_PVCNGCDDL_					0	0	0			REV__ENSG00000138193|ENST00000371380|PLCE1	REV__ENSG00000138193|ENST00000371380|PLCE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.183349609375	2	468.183503	934.352453	-0.35502	-0.00016621	0.21227	9.9383E-05	-0.14275	-6.6831E-05	468.1834913115575	40.443	0.69618	40.533	40.257	40.953	0.089645					45	26	2	0	0	0	0.3182	1	7309	7309		4.3292	1.7518	1	82573	+		15829	9308	10443	10556	21378	21378					-0.11734950290758661
PVCRYNWS	8	Unmodified	_PVCRYNWS_					0	0	0			REV__AluSx_dup50714|chr8:73955623-73955785:+|1.0913177093367623|1e-05|16.74|495.0|11|3|anti-sense	REV__AluSx_dup50714|chr8:73955623-73955785:+|1.0913177093367623|1e-05|16.74|495.0|11|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2791748046875	2	512.737094	1023.45964	0.29455	0.00015102	-1.121	-0.0005748	-0.8265	-0.00042378	512.7364218490578	53.269	1.0887	53.269	52.872	53.96	0					60	42	2	0	0	0	0.3576	1	11488	11488		5.7604	0.52976	1	146230	+		15830	7710	10444	10557	21379	21379					-0.05115612294230232
PVDEDTRVL	9	Unmodified	_PVDEDTRVL_					0	0	0			REV__nc|ENSG00000142949|P10586-2|PTPRF	REV__nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2716674804688	2	522.272021	1042.52949	-0.19121	-9.9866E-05	-0.29044	-0.00015169	-0.48165	-0.00025155	522.2718297516817	28.078	0.8994	28.161	27.952	28.852	0.082134					127	51	4	0	0	0	0.23216	1	3667	3667		14.838	14.838	1	376320	+		15831	9447	10445	10558	21380	21380					0.009925448553985916
PVEEVLEEL	9	Unmodified	_PVEEVLEEL_					0	0	0		nc|ENSG00000158163|Q8IYY4-2|DZIP1L;ENSG00000158163|ENST00000327532|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2373046875	2	528.776605	1055.53866	0.33666	0.00017802	0.18675	9.8747E-05	0.5234	0.00027676	528.776642068211	74.434	0.68299	74.434	74.171	74.854	0					36	24	2	0	0	0	0.25579	1	17878	17878		4.3292	0	1	289290			15832	3683	10446	10559	21381	21381					0.013108934210549705
PVEGRRIS	8	Unmodified	_PVEGRRIS_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.264404296875	2	457.264333	912.514114	0.50293	0.00022997	-0.22184	-0.00010144	0.28109	0.00012853	457.26415319391543	74.365	1.5564	74.365	74.095	75.652	0					109	58	3	0	0	0	0.53817	1	18058	18058		2.5775	0	1	276670	+		15833	8289	10447	10560	21382	21382					0.054357228488470355
PVEQFYRSLQ	10	Unmodified	_PVEQFYRSLQ_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3283081054688	2	633.827495	1265.64044	0.19229	0.00012188	0.075121	4.7614E-05	0.26741	0.00016949	633.8276415155547	60.464	0.84216	60.538	60.239	61.081	0.073421					59	29	3	0	0	0	0.44727	1	13454	13454		5.2969	0	1	492580			15834	4780	10448	10561	21383	21383					0.018241845634747733
PVERMVAETF	10	Unmodified	_PVERMVAETF_					0	0	0		ENST00000521825.1_1_8:143353010-143361338:-|nuORF	ENST00000521825.1_1_8:143353010-143361338:-|nuORF	ENST00000521825.1_1_8:143353010-143361338:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2798461914062	2	589.797349	1177.58014	0.28242	0.00016657	-2.7032	-0.0015943	-2.4207	-0.0014277	589.7956540876461	51.806	0.11497	51.806	51.743	51.858	0					5	3	2	0	0	0	0.31747	1	10844	10844		5.7319	1.7875	1	33199			15835	6962	10449	10562	21384	21384					-0.0015424909126977582
PVFGDGTNVI	10	Unmodified	_PVFGDGTNVI_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.764404296875	2	509.763832	1017.51311	0.59555	0.00030359	0.17418	8.8793E-05	0.76973	0.00039238	509.763839445199	54.348	0.98724	54.348	54.098	55.085	0					72	41	3	0	0	0	0.42335	1	11740	11740		9.3831	9.3831	1	821570			15836	2997	10450	10563	21385	21385					0.005054636893078168
PVFGGKKDDG	10	Unmodified	_PVFGGKKDDG_					0	0	0			REV__nc|ENSG00000090889|O95239-2|KIF4A	REV__nc|ENSG00000090889|O95239-2|KIF4A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.77734375	2	510.261456	1018.50836	0.24525	0.00012514	0.25598	0.00013062	0.50123	0.00025576	510.2614721375717	48.457	0.51895	48.537	48.357	48.876	0.080032					22	16	2	0	0	0	0.31456	1	9715	9715		14.838	0.93222	1	82206	+		15837	8312	10451	10564	21386	21386					-0.00015420453473780071
PVHPVYPPRVL	11	Unmodified	_PVHPVYPPRVL_					0	0	0		ENST00000381168.7_1_11:2187868-2190906:-|nuORF	ENST00000381168.7_1_11:2187868-2190906:-|nuORF	ENST00000381168.7_1_11:2187868-2190906:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3856811523438	2	637.374415	1272.73428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.58	1	101.62	101.12	102.12	0.042656								0	0	0	0.33362	1	25871	25871		2.9952	1.151	1				15838	6293	10452	10565	21387	21387					0.10881948456403734
PVHQRLAQF	9	Unmodified	_PVHQRLAQF_					0	0	0			REV__ENSG00000183734|ENST00000331289|ASCL2	REV__ENSG00000183734|ENST00000331289|ASCL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.775634765625	2	548.306532	1094.59851	0.8372	0.00045904	-3.4667	-0.0019008	-2.6295	-0.0014418	548.3062450711408	81.689	0.14465	81.689	81.601	81.746	0					6	4	2	0	0	0	0.25845	1	19977	19977		2.0598	0	1	13336	+		15839	10608	10453	10566	21388	21388					0.05499673665599403
PVHRLFRH	8	Unmodified	_PVHRLFRH_					0	0	0			REV__DYNC1H1-HSP90AA1|1|fusion	REV__DYNC1H1-HSP90AA1|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7621459960938	2	531.30941	1060.60427	0.2232	0.00011859	-1.0325	-0.00054855	-0.80926	-0.00042997	531.3085001329821	36.492	0.31055	36.492	36.352	36.663	0					17	11	2	0	0	0	0.3576	1	6256	6256		2.5775	0	1	18282	+		15840	7902	10454	10567	21389	21389					0.076388169679376
PVHVLGLFE	9	Unmodified	_PVHVLGLFE_					0	0	0			REV__ENST00000557584.5_1_14:74417012-74426158:+|nuORF	REV__ENST00000557584.5_1_14:74417012-74426158:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.76129150390625	2	505.78711	1009.55967	-0.0084903	-4.2943E-06	-1.9742	-0.00099855	-1.9827	-0.0010028	505.7848848576159	39.756	0.35559	39.845	39.662	40.018	0.088566					27	12	3	0	0	0	0.25845	1	7135	7135		2.0598	0.57785	1	40574	+		15841	12466	10455	10568	21390	21390					0.055269483112283524
PVITEIFSL	9	Unmodified	_PVITEIFSL_					0	0	0		nc|ENSG00000141644|Q9UIS9-8|MBD1;nc|ENSG00000141644|Q9UIS9-5|MBD1;nc|ENSG00000141644|Q9UIS9-10|MBD1;nc|ENSG00000141644|Q9UIS9-2|MBD1;ENSG00000141644|ENST00000269468|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1;ENST00000586884.1_1_18:47798982-47799349:-|nuORF;nc|ENSG00000141644|Q9UIS9-4|MBD1;nc|ENSG00000141644|Q9UIS9-11|MBD1;nc|ENSG00000141644|Q9UIS9-7|MBD1	nc|ENSG00000141644|Q9UIS9-8|MBD1	nc|ENSG00000141644|Q9UIS9-8|MBD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7945861816406	2	509.794601	1017.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.077	1	94.115	93.615	94.615	0.038086								0	0	0	0.26267	1	23585	23585		6.7232	0	1				15842	3072	10456	10569	21391	21391					0.06656395388563396
PVKLSHWLPF	10	Unmodified	_PVKLSHWLPF_					0	0	0		ENST00000471105.5_1_1:201958137-201965500:+|nuORF	ENST00000471105.5_1_1:201958137-201965500:+|nuORF	ENST00000471105.5_1_1:201958137-201965500:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.5688171386719	3	408.569365	1222.68626	-0.22567	-9.2202E-05	-0.32873	-0.00013431	-0.5544	-0.00022651	408.5692076492217	32.915	1.1373	32.989	32.602	33.74	0.074322					102	48	3	0	0	0	0.31851	1	5248	5248		0.77653	0.32202	1	36436			15843	6667	10457	10570	21392	21392					0.08382874536346208
PVKLSHWLPF	10	Unmodified	_PVKLSHWLPF_					0	0	0		ENST00000471105.5_1_1:201958137-201965500:+|nuORF	ENST00000471105.5_1_1:201958137-201965500:+|nuORF	ENST00000471105.5_1_1:201958137-201965500:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	408.569365	1222.68626	0.13184	5.3865E-05	-0.83647	-0.00034176	-0.70463	-0.00028789	408.5690117601627	33.273	1.3952	33.273	32.614	34.009	0	0.14212	-0.00023614	NaN	0.77653	97	55	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33185			15844	6667	10457	10570							0.08382874536346208
PVKQRLNVPG	10	Unmodified	_PVKQRLNVPG_					0	0	0		ENST00000311534.6_1_9:88889144-88896972:-|nuORF	ENST00000311534.6_1_9:88889144-88896972:-|nuORF	ENST00000311534.6_1_9:88889144-88896972:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7554931640625	2	554.33529	1106.65603	-0.06377	-3.535E-05	-1.1816	-0.00065498	-1.2453	-0.00069033	554.3345458390622	25.024	0.6515	25.024	24.852	25.504	0					92	51	3	0	0	0	0.31771	1	2952	2952		1.8442	0.36234	1	35962			15845	6003	10458	10571	21393	21393					0.10696515871177326
PVKVDEFVI	9	Unmodified	_PVKVDEFVI_					0	0	0			REV__ENST00000534334.5_1_1:76200478-76220620:+|nuORF	REV__ENST00000534334.5_1_1:76200478-76220620:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2818603515625	2	523.30005	1044.58555	0.16683	8.7302E-05	-0.40132	-0.00021001	-0.23449	-0.00012271	523.2997481297518	89.407	0.43045	89.407	89.244	89.674	0					29	15	2	0	0	0	0.27332	1	22298	22298		10.074	2.7847	1	141100	+		15846	7906	10459	10572	21394	21394					0.06503797762843533
PVKVDEFVI	9	Unmodified	_PVKVDEFVI_					0	0	0			REV__ENST00000534334.5_1_1:76200478-76220620:+|nuORF	REV__ENST00000534334.5_1_1:76200478-76220620:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	523.30005	1044.58555	0.16683	8.7302E-05	-0.40132	-0.00021001	-0.23449	-0.00012271	523.2997481297518	89.407	0.43045	89.407	89.244	89.674	0	0.032353	6.2174E-05	NaN	10.074	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141100	+		15847	7906	10459	10572							0.06503797762843533
PVKVDEFVI	9	Unmodified	_PVKVDEFVI_					0	0	0			REV__ENST00000534334.5_1_1:76200478-76220620:+|nuORF	REV__ENST00000534334.5_1_1:76200478-76220620:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	523.30005	1044.58555	0.13011	6.8086E-05	-0.50367	-0.00026357	-0.37356	-0.00019549	523.2997629980727	89.31	0.37878	89.342	89.224	89.603	0.032257	-0.032353	-4.4946E-05	NaN	10.074	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161320	+		15848	7906	10459	10572							0.06503797762843533
PVLESLFTFLF	11	Unmodified	_PVLESLFTFLF_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.90936279296875	3	438.244435	1311.71148	0.10887	4.7712E-05	-2.2503	-0.0009862	-2.1415	-0.00093849	438.243337627815	46.732	0.23906	46.815	46.725	46.964	0.083096					17	9	2	0	0	0	0.31085	1	9189	9189		3.0723	0.22898	1	119690	+		15849	10745	10460	10573	21395	21395					0.0680888454826345
PVLHRAPDLP	10	Unmodified	_PVLHRAPDLP_					0	0	0		ENST00000303545.3_1_8:125487403-125498198:+|nuORF	ENST00000303545.3_1_8:125487403-125498198:+|nuORF	ENST00000303545.3_1_8:125487403-125498198:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2420043945312	2	557.822015	1113.62948	0.68307	0.00038103	-1.5346	-0.00085603	-0.85153	-0.000475	557.8210433454514	54.996	0.52023	54.996	54.798	55.318	0					44	19	3	0	0	0	0.31496	1	11847	11847		13.906	3.1065	1	296170			15850	5982	10461	10574	21396	21396					0.07720826979834783
PVLIDILQKAE	11	Unmodified	_PVLIDILQKAE_					0	0	0		KPNA5|p.E388D|1|0.24|ENSG00000196911|chr6:116726533-116726533|G/C|missense_variant	KPNA5|p.E388D|1|0.24|ENSG00000196911|chr6:116726533-116726533|G/C|missense_variant	KPNA5|p.E388D|1|0.24|ENSG00000196911|chr6:116726533-116726533|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8720703125	2	619.871371	1237.72819	-0.028097	-1.7417E-05	1.2034	0.00074595	1.1753	0.00072853	619.8720118191819	37.459	0.37519	37.544	37.397	37.772	0.084476					18	12	2	0	0	0	0.40693	1	6411	6411		2.7352	0.23671	1	24446			15851	7380	10462	10575	21397	21397					0.11883385434225602
PVLIMDQHVLF	11	Unmodified	_PVLIMDQHVLF_					0	0	0			REV__nc|ENSG00000118492|Q8N7X0-2|ADGB	REV__nc|ENSG00000118492|Q8N7X0-2|ADGB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.90936279296875	3	437.90917	1310.70568	0.17948	7.8595E-05	-0.65285	-0.00028589	-0.47337	-0.00020729	437.9091391239309	46.991	0.78633	47.074	46.703	47.489	0.083096					58	31	4	0	0	0	0.39824	1	9189	9189		4.7159	0.83959	1	318170	+		15852	8844	10463	10576	21398	21398					0.06275462764938311
PVLPDPLESF	10	Unmodified	_PVLPDPLESF_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2952880859375	2	557.294965	1112.57538	0.61853	0.00034471	0.2193	0.00012222	0.83784	0.00046692	557.2949751913211	91.975	0.39873	92.012	91.887	92.286	0.03653					18	13	2	0	0	0	0.29844	1	22978	22978		22.736	1.1993	1	54339	+		15853	9838	10464	10577	21399	21399					0.023591900376231933
PVLQVLCPA	9	Unmodified	_PVLQVLCPA_					0	0	0		ENST00000561173.5_1_1:197885422-197885647:+|nuORF	ENST00000561173.5_1_1:197885422-197885647:+|nuORF	ENST00000561173.5_1_1:197885422-197885647:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2683410644531	2	470.270238	938.525924	0.18873	8.8753E-05	-3.2977	-0.0015508	-3.109	-0.0014621	470.2683489706226	71.229	0.35555	71.288	71.108	71.464	0.058578					27	12	3	0	0	0	0.14718	1	16636	16636		24.674	6.5389	1	119880			15854	7151	10465	10578	21400	21400					0.05420203547816982
PVLQVLCPA	9	Unmodified	_PVLQVLCPA_					0	0	0		ENST00000561173.5_1_1:197885422-197885647:+|nuORF	ENST00000561173.5_1_1:197885422-197885647:+|nuORF	ENST00000561173.5_1_1:197885422-197885647:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	470.270238	938.525924	0.25108	0.00011807	-3.8469	-0.0018091	-3.5958	-0.001691	470.26818826034173	71.31	0.34424	71.31	71.158	71.502	0	0.011095	-0.00020696	NaN	24.674	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143060			15855	7151	10465	10578							0.05420203547816982
PVLSSTGTL	9	Unmodified	_PVLSSTGTL_					0	0	0		ENSG00000101542|ENST00000262717|CDH20	ENSG00000101542|ENST00000262717|CDH20	ENSG00000101542|ENST00000262717|CDH20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.9092102050781	2	437.74765	873.480748	0.46499	0.00020355	-0.018003	-7.8808E-06	0.44699	0.00019567	437.747417048587	46.988	0.55987	46.988	46.789	47.349	0					39	19	4	0	0	0	0.24263	1	9358	9358		12.532	2.3482	1	249160			15856	1264	10466	10579	21401	21401					0.03894676286302001
PVMFEDFSF	9	Unmodified	_PVMFEDFSF_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.765625	2	559.746793	1117.47903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.367	1	92.403	91.903	92.903	0.03653								0	0	0	0.23452	1	23063	23063		12.532	1.7076	1		+		15857	12894	10467	10580	21402	21402					-0.07500700793980286
PVNDEPIV	8	Unmodified	_PVNDEPIV_					0	0	0		ENST00000494981.1_1_14:105935406-105936549:+|nuORF;ENST00000481635.1_1_14:105935922-105936549:+|nuORF;ENST00000552286.5_1_14:105932689-105936549:+|nuORF;ENST00000481206.1_1_14:105935538-105936549:+|nuORF;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	ENST00000494981.1_1_14:105935406-105936549:+|nuORF	ENST00000494981.1_1_14:105935406-105936549:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.7321472167969	2	441.732	881.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.354	1	46.439	45.939	46.939	0.085617								0	0	0	0.38822	1	9084	9084		9.3474	2.9933	1				15858	4898	10468	10581	21403	21403					0.003981032521892303
PVNEKLHEI	9	Unmodified	_PVNEKLHEI_					0	0	0			REV__nc|ENSG00000154839|Q96BD8-2|SKA1	REV__nc|ENSG00000154839|Q96BD8-2|SKA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7987060546875	2	539.798206	1077.58186	0.44996	0.00024289	-1.7141	-0.00092527	-1.2641	-0.00068238	539.7982388660286	48.336	1.0032	48.416	48.155	49.159	0.080029					98	34	4	0	0	0	0.27332	1	9820	9820		10.074	2.1638	1	1097800	+		15859	9718	10469	10582	21404	21404					0.046171279889904326
PVNIVNTQ	8	Unmodified	_PVNIVNTQ_					0	0	0			REV__PPP1R13B|p.R104T|1|0.27|ENSG00000088808|chr14:103778788-103778788|C/G|missense_variant	REV__PPP1R13B|p.R104T|1|0.27|ENSG00000088808|chr14:103778788-103778788|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.7448425292969	2	442.745442	883.476331	0.57559	0.00025484	-1.5574	-0.00068954	-0.98182	-0.0004347	442.74464812430205	82.787	0.4904	82.787	82.651	83.141	0					24	16	2	0	0	0	0.53423	1	20339	20339		5.2307	0	1	76344	+		15860	12963	10470	10583	21405	21405					0.029932118633610116
PVNIVNTQT	9	Unmodified	_PVNIVNTQT_					0	0	0			REV__PPP1R13B|p.R104T|1|0.27|ENSG00000088808|chr14:103778788-103778788|C/G|missense_variant	REV__PPP1R13B|p.R104T|1|0.27|ENSG00000088808|chr14:103778788-103778788|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.76812744140625	2	493.269281	984.52401	-0.2655	-0.00013096	-1.3959	-0.00068855	-1.6614	-0.00081951	493.26929466481147	42.717	0.7261	42.717	42.248	42.974	0					54	24	3	0	0	0	0.33704	1	8001	8001		1.8442	0	1	119950	+		15861	12963	10471	10584	21406	21406					0.031128660635545202
PVNRWHTRL	9	Unmodified	_PVNRWHTRL_					0	0	0			REV__ENST00000430580.6_1_1:16913598-16914274:-|nuORF	REV__ENST00000430580.6_1_1:16913598-16914274:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8300170898438	2	589.830706	1177.64686	0.065026	3.8354E-05	-0.67858	-0.00040025	-0.61356	-0.00036189	589.8302165028826	28.44	0.88563	28.522	28.304	29.189	0.082132					89	57	2	0	0	0	0.34704	1	3844	3844		0.52476	0.12405	1	26526	+		15862	11847	10472	10585	21407	21407					0.06514167305499541
PVPEGLIRIYS	11	Unmodified	_PVPEGLIRIYS_					0	0	0		nc|ENSG00000065621|Q9H4Y5-2|GSTO2;ENSG00000065621|ENST00000338595|GSTO2	nc|ENSG00000065621|Q9H4Y5-2|GSTO2	nc|ENSG00000065621|Q9H4Y5-2|GSTO2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.2439270019531	3	415.239684	1242.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.682	1	99.725	99.225	100.22	0.042839								0	0	0	0.33835	1	25293	25293		1.3296	0.25818	1				15863	687	10473	10586	21408	21408					0.08558232119980858
PVPPPTEA	8	Unmodified	_PVPPPTEA_					0	0	0			REV__TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	REV__TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.21600341796875	2	404.215986	806.417419	0.036886	1.491E-05	-0.086893	-3.5123E-05	-0.050006	-2.0213E-05	404.2158350756397	60.732	0.61134	60.805	60.657	61.268	0.073418					29	20	2	0	0	0	0.53345	1	13498	13498		5.7604	0	1	153340	+		15864	8921	10474	10587	21409	21409					0.006467355690347176
PVPQHELQ	8	Unmodified	_PVPQHELQ_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.21612548828125	2	474.250892	946.48723	-0.05494	-2.6055E-05	0.41894	0.00019868	0.364	0.00017263	474.2511256850173	36.61	0.39808	36.692	36.455	36.853	0.081711					21	16	2	0	0	0	0.3576	1	6140	6140		5.7604	0.52976	1	27607			15865	3461	10475	10588	21410	21410					0.011846142376612079
PVPRWLLLL	9	Unmodified	_PVPRWLLLL_					0	0	0		ENST00000573823.5_1_17:55055520-55064652:+|nuORF;ENST00000571345.5_1_17:55055520-55072276:+|nuORF;ENST00000571898.5_1_17:55055520-55072831:+|nuORF;nc|ENSG00000121064|Q9HB40-2|SCPEP1;ENSG00000121064|ENST00000262288|SCPEP1	ENST00000573823.5_1_17:55055520-55064652:+|nuORF	ENST00000573823.5_1_17:55055520-55064652:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8587036132812	2	553.85787	1105.70119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.96	1	111.96	111.46	112.46	0								0	0	0	0.2927	1	28655	28655		0.52476	0	1				15866	2143	10476	10589	21411	21411					0.1525636640437824
PVQDRGIFSMV	11	Unmodified	_PVQDRGIFSMV_					0	0	0			REV__RIOK3|p.H364R|1|0.15|ENSG00000101782|chr18:23475025-23475025|A/G|missense_variant	REV__RIOK3|p.H364R|1|0.15|ENSG00000101782|chr18:23475025-23475025|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.7427368164062	2	624.823898	1247.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.609	1	93.609	93.109	94.109	0								0	0	0	0.33564	1	23602	23602		2.2828	0.80087	1		+		15867	12976	10477	10590	21412	21412					0.01933128691393904
PVQEELSVL	9	Unmodified	_PVQEELSVL_					0	0	0		ENST00000497058.5_1_1:95699786-95705364:+|nuORF;ENST00000495272.5_1_1:95699786-95705367:+|nuORF;ENST00000492639.5_1_1:95699771-95702959:+|nuORF;nc|ENSG00000122481|Q9Y3V2-2|RWDD3;nc|ENSG00000122481|Q9Y3V2-4|RWDD3;ENSG00000122481|ENST00000370202|RWDD3	ENST00000497058.5_1_1:95699786-95705364:+|nuORF	ENST00000497058.5_1_1:95699786-95705364:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.279296875	2	507.279315	1012.54408	0.3239	0.00016431	0.13724	6.9621E-05	0.46114	0.00023393	507.2791826067581	75.687	0.55293	75.731	75.412	75.965	0.044037					66	30	3	0	0	0	0.088609	1	17983	17983		34.932	0	1	3016300			15868	2182	10478	10591	21413	21413					0.03830617003529824
PVQYVHNLKF	10	Unmodified	_PVQYVHNLKF_					0	0	0			REV__ENST00000473429.5_1_1:110584363-110592127:+|nuORF	REV__ENST00000473429.5_1_1:110584363-110592127:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7493286132812	2	622.842948	1243.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.799	1	59.799	59.299	60.299	0								0	0	0	0.33892	1	13295	13295		1.4819	0.15237	1		+		15869	12044	10479	10592	21414	21414					0.05925382668351631
PVRHRVQEI	9	Unmodified	_PVRHRVQEI_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8174438476562	2	567.330539	1132.64652	0.4932	0.00027981	-1.0246	-0.0005813	-0.53142	-0.00030149	567.3309760143982	54.227	0.25976	54.292	54.14	54.399	0.065128					19	9	3	0	0	0	0.24263	1	11433	11433		12.532	0.89125	1	66565	+		15870	12850	10480	10593	21415	21415					0.0855074758567298
PVRHRVQEI	9	Unmodified	_PVRHRVQEI_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	567.330539	1132.64652	0.55032	0.00031221	-0.59058	-0.00033505	-0.040259	-2.284E-05	567.3315674176398	54.238	0.3323	54.238	54.069	54.401	0	-0.027011	0.00017018	NaN	12.532	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78367	+		15871	12850	10480	10593							0.0855074758567298
PVRIVVPLKE	10	Unmodified	_PVRIVVPLKE_					0	0	0			REV__ENSG00000138600|ENST00000261854|SPPL2A	REV__ENSG00000138600|ENST00000261854|SPPL2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.3705444335938	2	575.371341	1148.72813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.9	1	111.9	111.4	112.4	0								0	0	0	0.33916	1	28635	28635		1.1933	0.66858	1		+		15872	9317	10481	10594	21416	21416					0.15971430224885808
PVRPAATFP	9	Unmodified	_PVRPAATFP_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2714538574219	2	478.271627	954.528701	-0.28949	-0.00013846	-0.081067	-3.8772E-05	-0.37056	-0.00017723	478.2716360033821	43.513	1.2098	43.602	43.186	44.396	0.088921					101	42	4	0	0	0	0.26684	1	8176	8176		10.824	10.824	1	580010			15873	5227	10482	10595	21417	21417					0.0496179499699565
PVRPPSPRR	9	Unmodified	_PVRPPSPRR_					0	0	0			REV__ENST00000372684.7_1_1:41113455-41131276:-|nuORF	REV__ENST00000372684.7_1_1:41113455-41131276:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3193359375	2	531.319974	1060.6254	0.33027	0.00017548	-1.428	-0.00075871	-1.0977	-0.00058324	531.3190733895401	89.215	0.9514	89.247	89.034	89.985	0.032265					81	35	4	0	0	0	0.30397	1	22136	22136		6.2058	6.2058	1	562280	+		15874	11610	10483	10596	21418	21418					0.09750782276796599
PVRRRRGRGG	10	Unmodified	_PVRRRRGRGG_					0	0	0		ENST00000520674.5_1_5:141017085-141017214:+|nuORF	ENST00000520674.5_1_5:141017085-141017214:+|nuORF	ENST00000520674.5_1_5:141017085-141017214:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8590698242188	2	583.858121	1165.70169	0.76007	0.00044377	0.93129	0.00054374	1.6914	0.00098751	583.8585299374467	92.625	0.78137	92.625	92.32	93.101	0					70	29	3	0	0	0	0.45627	1	23279	23279		3.5965	0	1	403050			15875	6955	10484	10597	21419	21419					0.1254659889677896
PVRSRRRRQ	9	Unmodified	_PVRSRRRRQ_					0	0	0			REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.87255859375	2	605.871228	1209.7279	0.75783	0.00045915	0.97751	0.00059224	1.7353	0.0010514	605.8717221981537	94.082	0.57246	94.12	93.972	94.544	0.038086					63	26	3	0	0	0	0.32112	1	23559	23559		3.9444	1.4459	1	301110	+		15876	11952	10485	10598	21420	21420					0.13142868068257485
PVRSRRRRQ	9	Unmodified	_PVRSRRRRQ_					0	0	0			REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2908935546875	2	605.871228	1209.7279	0.75783	0.00045915	0.97751	0.00059224	1.7353	0.0010514	605.8717221981537	94.082	0.57246	94.12	93.972	94.544	0.038086					63	26	3	0	0	0	0.25644	1	23605	23605		3.9444	1.4459	1	301110	+		15877	11952	10485	10598	21421	21421					0.13142868068257485
PVSGLVPSL	9	Unmodified	_PVSGLVPSL_					0	0	0			REV__ENST00000571365.1_1_17:4843824-4844115:+|nuORF	REV__ENST00000571365.1_1_17:4843824-4844115:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.7604064941406	2	434.760561	867.506569	0.71363	0.00031026	-1.0155	-0.00044151	-0.30189	-0.00013125	434.7600067418568	54.928	0.93722	54.928	54.614	55.551	0					48	34	2	0	0	0	0.092418	1	11852	11852		34.102	0	1	111210	+		15878	12522	10486	10599	21422	21422					0.06751570528570028
PVSGLVPSL	9	Unmodified	_PVSGLVPSL_					0	0	0			REV__ENST00000571365.1_1_17:4843824-4844115:+|nuORF	REV__ENST00000571365.1_1_17:4843824-4844115:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	434.760561	867.506569	0.71363	0.00031026	-1.0155	-0.00044151	-0.30189	-0.00013125	434.7600067418568	54.928	0.93722	54.928	54.614	55.551	0	0.02362	-0.00016112	NaN	34.102	48	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111210	+		15879	12522	10486	10599							0.06751570528570028
PVSGLVPSL	9	Unmodified	_PVSGLVPSL_					0	0	0			REV__ENST00000571365.1_1_17:4843824-4844115:+|nuORF	REV__ENST00000571365.1_1_17:4843824-4844115:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	434.760561	867.506569	0.43644	0.00018975	-0.7197	-0.0003129	-0.28326	-0.00012315	434.7601780207287	54.815	0.77695	54.881	54.714	55.491	0.065128	-0.02362	9.6106E-05	NaN	34.102	41	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98846	+		15880	12522	10486	10599							0.06751570528570028
PVSREWTL	8	Unmodified	_PVSREWTL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2668151855469	2	494.266542	986.51853	0.31883	0.00015758	0.21651	0.00010701	0.53534	0.0002646	494.26666431289283	48.552	1.0835	48.552	48.339	49.422	0					70	37	4	0	0	0	0.065403	2	9860	9860;9904		60.074	20.124	1	458980			15881	793	10487	10600	21423;21424	21423					0.024731872717552505
PVSREWTL	8	Unmodified	_PVSREWTL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.26727294921875	2	494.266542	986.51853	0.34229	0.00016918	0.16157	7.986E-05	0.50387	0.00024904	494.2665569060601	48.448	0.97807	48.528	48.274	49.252	0.080029					61	33	3	0	0	0	0.093701	2	9694	9694;9743		55.503	21.4	1	477440			15882	793	10487	10600	21425;21426	21425					0.024731872717552505
PVSSYGSF	8	Unmodified	_PVSSYGSF_					0	0	0			REV__ENST00000467674.5_1_9:130672274-130679146:-|nuORF	REV__ENST00000467674.5_1_9:130672274-130679146:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1989440917969	2	422.197793	842.381034	0.50574	0.00021352	1.0766	0.00045454	1.5823	0.00066806	422.1986089762605	77.061	1.1071	77.061	76.173	77.28	0					84	41	3	0	0	0	0.53817	1	18362	18362		2.5775	0	1	218580	+		15883	9252	10488	10601	21427	21427					-0.046461413276574604
PVSSYLATF	9	Unmodified	_PVSSYLATF_					0	0	0			REV__nc|ENSG00000204531|Q01860-2|POU5F1	REV__nc|ENSG00000204531|Q01860-2|POU5F1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7688293457031	2	492.755475	983.496398	0.26099	0.00012861	-3.0082	-0.0014823	-2.7472	-0.0013537	492.7544562330204	60.549	1.1688	60.622	60.066	61.235	0.073418					77	40	3	0	0	0	0.092418	1	13326	13326		34.102	13.649	1	464130	+		15884	10947	10489	10602	21428	21428					0.0039896280333096
PVTFINEGPF	10	Unmodified	_PVTFINEGPF_					0	0	0		ENSG00000116194|ENST00000234816|ANGPTL1	ENSG00000116194|ENST00000234816|ANGPTL1	ENSG00000116194|ENST00000234816|ANGPTL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8057861328125	2	560.787307	1119.56006	0.13733	7.7011E-05	0.35461	0.00019886	0.49194	0.00027587	560.7875420671804	73.582	0.5203	73.582	73.399	73.92	0					31	18	2	0	0	0	0.21218	1	17493	17493		32.305	2.0807	1	306590			15885	1947	10490	10603	21429	21429					0.005063232404154405
PVVASAQTQP	10	Unmodified	_PVVASAQTQP_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7687072753906	2	499.269281	996.52401	0.42444	0.00021191	-1.2653	-0.00063174	-0.84089	-0.00041983	499.7688223890684	68.42	0.7253	68.483	68.221	68.946	0.063507					60	27	3	0	0	0	0.39662	1	15773	15773		12.241	0.60036	1	318040			15886	4555	10491	10604	21430	21430					0.025608660635725755
PVVGARRG	8	Unmodified	_PVVGARRG_					0	0	0		nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213	nc|ENSG00000085644|O14771-2|ZNF213	nc|ENSG00000085644|O14771-2|ZNF213	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.24871826171875	2	406.248486	810.48242	0.07888	3.2045E-05	0.13856	5.6291E-05	0.21744	8.8336E-05	406.2484987448317	83.587	0.99162	83.609	83.304	84.295	0.021744					119	35	5	0	0	0	0.53817	2	20335	20335;20478		2.5775	0	1	5313400			15887	962	10492	10605	21431;21432	21431					0.06959774885569914
PVVHSVGH	8	Unmodified	_PVVHSVGH_					0	0	0			REV__ENSG00000148156|ENST00000374667|ACTL7B	REV__ENSG00000148156|ENST00000374667|ACTL7B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.1763916015625	2	416.22722	830.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.834	1	98.876	98.376	99.376	0.041931								0	0	0	0.38822	1	25037	25037		2.5775	1.7838	1		+		15888	9586	10493	10606	21433	21433					0.01788379757340408
PVVKETSMQL	10	Unmodified	_PVVKETSMQL_					0	0	0		ENST00000495910.6_1_17:29490228-29576996:+|nuORF	ENST00000495910.6_1_17:29490228-29576996:+|nuORF	ENST00000495910.6_1_17:29490228-29576996:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2861938476562	2	566.307549	1130.60055	-0.081151	-4.5957E-05	1.5795	0.00089449	1.4984	0.00084853	566.3086287824692	72.543	0.52036	72.543	72.172	72.692	0					27	15	3	0	0	0	0.31585	1	17216	17216		6.7232	0	1	90196			15889	6836	10494	10607	21434	21434					0.04046921568556172
PVVLRKRR	8	Unmodified	_PVVLRKRR_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.347900390625	2	512.348535	1022.68252	0.4831	0.00024751	-1.4311	-0.00073322	-0.948	-0.00048571	512.3476773042971	100.66	0.46239	100.7	100.52	100.99	0.042839					50	28	2	0	0	0	0.54097	1	25582	25582		0.69038	0.69038	1	184120			15890	291	10495	10608	21435	21435					0.17208249553175392
PVWVALVSC	9	Unmodified	_PVWVALVSC_					0	0	0			REV__ENST00000477238.1_1_22:19707079-19707537:+|nuORF	REV__ENST00000477238.1_1_22:19707079-19707537:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2638244628906	2	487.262413	972.510274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.731	1	56.731	56.231	57.231	0								0	0	0	0.2722	1	12366	12366		4.756	1.8668	1		+		15891	12058	10496	10609	21436	21436					0.02291917030777313
PVYLVKRLF	9	Unmodified	_PVYLVKRLF_					0	0	0		ENST00000581216.5_2_17:29233661-29233769:-|nuORF	ENST00000581216.5_2_17:29233661-29233769:-|nuORF	ENST00000581216.5_2_17:29233661-29233769:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.72802734375	2	567.855327	1133.6961	0.72308	0.00041061	-0.54259	-0.00030812	0.18049	0.00010249	567.8549416476202	80.014	1.2974	80.014	79.79	81.087	0					95	44	3	0	0	0	0.25579	1	19659	19659		4.3292	0	1	648560			15892	7220	10497	10610	21437	21437					0.13460062541730622
PWAFPFPL	8	Unmodified	_PWAFPFPL_					0	0	0			REV__ENSG00000226490|ENST00000643770|C8orf90	REV__ENSG00000226490|ENST00000643770|C8orf90	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.24188232421875	2	487.760364	973.506175	-0.19445	-9.4844E-05	1.2134	0.00059187	1.019	0.00049703	487.760769360376	39.763	0.293	39.763	39.601	39.894	0					12	9	2	0	0	0	0.3576	1	7192	7192		0.79363	0	1	21952	+		15893	11032	10498	10611	21438	21438					0.018361955993668744
PWCFYPNT	8	Unmodified	_PWCFYPNT_					0	0	0		ENSG00000160182|ENST00000291527|TFF1	ENSG00000160182|ENST00000291527|TFF1	ENSG00000160182|ENST00000291527|TFF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2203979492188	2	514.220746	1026.42694	-0.060255	-3.0984E-05	-1.085	-0.00055792	-1.1452	-0.0005889	514.2200046231048	26.573	0.39527	26.66	26.515	26.91	0.0867					54	29	2	0	0	0	0.54081	1	3214	3214		0.79363	0.26887	1	26523			15894	3749	10499	10612	21439	21439					-0.08521819417092047
PWFKIIAATF	10	Unmodified	_PWFKIIAATF_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.33984375	2	597.33951	1192.66447	0.71089	0.00042465	-0.40454	-0.00024165	0.30635	0.000183	597.3393442663478	81.61	0.68945	81.61	81.347	82.036	0					61	23	4	0	0	0	0.0049352	1	19969	19969		80.676	70.602	1	261890			15895	706	10500	10613	21440	21440					0.0758406978777657
PWFKIIAATF	10	Unmodified	_PWFKIIAATF_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3394775390625	2	597.33951	1192.66447	0.27961	0.00016702	0.21036	0.00012565	0.48997	0.00029268	597.3397048960118	81.656	0.54296	81.678	81.475	82.018	0.021866					46	19	3	0	0	0	5.9292E-05	2	19799	19799;19846		103.42	90.377	1	277500			15896	706	10500	10613	21441;21442	21441					0.0758406978777657
PWHAGTYS	8	Unmodified	_PWHAGTYS_					0	0	0		nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22	nc|ENSG00000012124|P20273-5|CD22	nc|ENSG00000012124|P20273-5|CD22	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.710693359375	2	459.70886	917.403166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.645	1	99.645	99.145	100.15	0								0	0	0	0.38822	1	25436	25436		9.3474	4.1168	1				15897	438	10501	10614	21443	21443					-0.05883916859238525
PWHAGTYS	8	Unmodified	_PWHAGTYS_					0	0	0		nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22	nc|ENSG00000012124|P20273-5|CD22	nc|ENSG00000012124|P20273-5|CD22	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7104797363281	2	459.70886	917.403166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.788	1	99.788	99.288	100.29	0								0	0	0	0.38822	1	25480	25480		5.2307	0	1				15898	438	10501	10614	21444	21444					-0.05883916859238525
PWHAGTYS	8	Unmodified	_PWHAGTYS_					0	0	0		nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22	nc|ENSG00000012124|P20273-5|CD22	nc|ENSG00000012124|P20273-5|CD22	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.710693359375	2	459.70886	917.403166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.928	1	99.928	99.428	100.43	0								0	0	0	0.38822	1	25524	25524		9.3474	4.1168	1				15899	438	10501	10614	21445	21445					-0.05883916859238525
PWLFDAPKF	9	Unmodified	_PWLFDAPKF_					0	0	0		nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.795654296875	2	560.794935	1119.57532	0.36825	0.00020651	0.99818	0.00055977	1.3664	0.00076628	560.7954864162353	77.189	1.1501	77.189	76.947	78.097	0					81	46	2	0	0	0	0.0034419	2	18590	18590;18633		106.94	78.363	1	1643900			15900	3417	10502	10615	21446;21447	21446					0.0203123482826868
PWLFDAPKF	9	Unmodified	_PWLFDAPKF_					0	0	0		nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.79541015625	2	560.794935	1119.57532	0.52615	0.00029506	0.91037	0.00051053	1.4365	0.00080559	560.7955148689529	77.191	1.0068	77.225	76.935	77.942	0.034485					58	40	2	0	0	0	0.00061878	2	18424	18424;18462		129.77	99.548	1	1373000			15901	3417	10502	10615	21448;21449	21448					0.0203123482826868
PWLQHLSG	8	Unmodified	_PWLQHLSG_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7790222167969	2	469.248152	936.481751	0.41589	0.00019516	-0.014753	-6.9228E-06	0.40114	0.00018823	469.2479280460631	87.996	0.23	87.996	87.855	88.085	0					10	7	2	0	0	0	0.3576	1	21896	21896		2.5775	0	1	48368			15902	2363	10503	10616	21450	21450					0.010969354458552516
PWPGQPLD	8	Unmodified	_PWPGQPLD_					0	0	0		ENST00000609350.1_1_2:128644297-128644417:+|nuORF	ENST00000609350.1_1_2:128644297-128644417:+|nuORF	ENST00000609350.1_1_2:128644297-128644417:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2255554199219	2	455.226885	908.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.347	1	94.385	93.885	94.885	0.038086								0	0	0	0.38822	1	23667	23667		0.79363	0	1				15903	7321	10504	10617	21451	21451					-0.018664596824010005
PWPQEFSY	8	Unmodified	_PWPQEFSY_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2377319335938	2	527.23745	1052.46035	-0.14058	-7.4119E-05	0.82046	0.00043258	0.67988	0.00035846	527.2377480760262	30.584	0.33506	30.584	30.497	30.832	0					21	17	2	0	0	0	0.54081	1	4478	4478		0.79363	0	1	15429	+		15904	9592	10505	10618	21452	21452					-0.06378494373529975
PWQQTPWFY	9	Unmodified	_PWQQTPWFY_					0	0	0			REV__nc|ENSG00000108370|O75916-2|RGS9	REV__nc|ENSG00000108370|O75916-2|RGS9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8059692382812	2	626.792924	1251.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.331	1	70.392	69.892	70.892	0.060562								0	0	0	0.24643	1	16354	16354		10.074	3.3508	1		+		15905	8614	10506	10619	21453	21453					-0.04442854665444429
PWRLPFLGNF	10	Unmodified	_PWRLPFLGNF_					0	0	0		CYP2J2|p.S80*|1|0.3|ENSG00000134716|chr1:59916073-59916074|-/A|frameshift_variant;ENST00000468257.1_1_1:60381746-60392418:-|nuORF;ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;ENSG00000134716|ENST00000371204|CYP2J2	CYP2J2|p.S80*|1|0.3|ENSG00000134716|chr1:59916073-59916074|-/A|frameshift_variant	CYP2J2|p.S80*|1|0.3|ENSG00000134716|chr1:59916073-59916074|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2279357910156	3	416.229231	1245.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.09	1	52.157	51.657	52.657	0.067173								0	0	0	0.3384	1	10813	10813		2.086	0.17963	1				15906	263	10507	10620	21454	21454					0.05285703876552361
PWSFPGWL	8	Unmodified	_PWSFPGWL_					0	0	0		nc|ENSG00000054983|P54803-5|GALC;GALC|p.W629Mfs*9|1|0.24|ENSG00000054983|chr14:87939931-87939932|-/T|frameshift_variant;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	nc|ENSG00000054983|P54803-5|GALC	nc|ENSG00000054983|P54803-5|GALC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.248046875	2	495.247621	988.480688	0.013507	6.6894E-06	1.4784	0.00073215	1.4919	0.00073884	495.2483852494537	26.964	0.37314	27.051	26.875	27.248	0.0867					48	25	3	0	0	0	0.53817	1	3312	3312		2.5775	2.5775	1	43898			15907	607	10508	10621	21455	21455					-0.014012789230605449
PWSLSTPQWK	10	Unmodified	_PWSLSTPQWK_					0	0	0			REV__nc|ENSG00000135423|Q9UI32-2|GLS2	REV__nc|ENSG00000135423|Q9UI32-2|GLS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7987670898438	2	615.319306	1228.62406	-0.12077	-7.431E-05	0.35622	0.00021919	0.23545	0.00014488	615.319477085937	61.858	0.13491	61.858	61.786	61.921	0					5	4	2	0	0	0	0.31667	1	13908	13908		8.7454	0	1	63345	+		15908	12796	10509	10622	21456	21456					0.01889103397343206
PWSLSTPQWK	10	Unmodified	_PWSLSTPQWK_					0	0	0			REV__nc|ENSG00000135423|Q9UI32-2|GLS2	REV__nc|ENSG00000135423|Q9UI32-2|GLS2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	615.319306	1228.62406	-0.081703	-5.0273E-05	0.12408	7.6351E-05	0.042381	2.6078E-05	615.3193611371563	61.455	0.10442	61.528	61.507	61.612	0.073421	-0.16501	-9.996E-05	NaN	13.042	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438810	+		15909	12796	10509	10622							0.01889103397343206
PWTNVGKLVF	10	Unmodified	_PWTNVGKLVF_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2911987304688	2	580.826766	1159.63898	0.53779	0.00031236	0.4045	0.00023494	0.94229	0.00054731	580.8261149412475	68.46	0.50409	68.46	68.324	68.828	0					28	17	2	0	0	0	0.31794	1	15925	15925		4.1895	2.86	1	99996			15910	2992	10510	10623	21457	21457					0.06554595265379248
PWTPLHRCI	9	Unmodified	_PWTPLHRCI_					0	0	0		ENST00000493940.2_1_1:22177888-22181121:-|nuORF	ENST00000493940.2_1_1:22177888-22181121:-|nuORF	ENST00000493940.2_1_1:22177888-22181121:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.78076171875	2	561.797486	1121.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.825	1	88.857	88.357	89.357	0.032257								0	0	0	0.25992	1	21986	21986		7.2892	2.0586	1				15911	6822	10511	10624	21458	21458					0.024492154192330418
PWVTRDIVE	9	Unmodified	_PWVTRDIVE_					0	0	0			REV__ENST00000392432.6_1_3:194308694-194308883:-|nuORF	REV__ENST00000392432.6_1_3:194308694-194308883:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7822265625	2	557.798206	1113.58186	0.9251	0.00051602	-0.14238	-7.942E-05	0.78271	0.0004366	557.7983064876249	67.301	1.0363	67.366	66.839	67.876	0.065071					67	35	3	0	0	0	0.29105	1	15346	15346		7.9102	0.62092	1	416840	+		15912	11691	10512	10625	21459	21459					0.02961127988987755
PWWKDTLY	8	Unmodified	_PWWKDTLY_					0	0	0			REV__ENST00000400556.7_1_18:9593837-9595043:-|nuORF	REV__ENST00000400556.7_1_18:9593837-9595043:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2017822265625	2	554.776742	1107.53893	0.40072	0.00022231	-2.6283	-0.0014581	-2.2275	-0.0012358	554.7752314183027	38.688	0.60799	38.688	38.396	39.004	0					39	22	2	0	0	0	0.3576	1	6954	6954		0.79363	0	1	56596	+		15913	11751	10513	10626	21460	21460					-0.010536420684275072
PWWREGAL	8	Unmodified	_PWWREGAL_					0	0	0		ENST00000232978.12_1_3:42688951-42689098:+|nuORF	ENST00000232978.12_1_3:42688951-42689098:+|nuORF	ENST00000232978.12_1_3:42688951-42689098:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2526550292969	2	507.761426	1013.5083	0.20128	0.0001022	0.91731	0.00046578	1.1186	0.00056798	507.7620340935086	59.621	0.70877	59.621	59.308	60.017	0					35	27	2	0	0	0	0.3576	1	13344	13344		7.9102	0	1	102170			15914	5814	10514	10627	21461	21461					0.002086243371763885
PWYLDLISY	9	Unmodified	_PWYLDLISY_					0	0	0		ENST00000504459.5_1_5:74009375-74016573:+|nuORF;ENSG00000049860|ENST00000261416|HEXB	ENST00000504459.5_1_5:74009375-74016573:+|nuORF	ENST00000504459.5_1_5:74009375-74016573:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8130493164062	2	585.297507	1168.58046	0.56596	0.00033126	0.62282	0.00036453	1.1888	0.00069579	585.2980029097878	101.29	0.24717	101.29	101.16	101.4	0					23	13	2	0	0	0	0.25809	1	25904	25904		2.3027	0	1	51303			15915	577	10515	10628	21462	21462					0.002914939002494066
PYADHYSTF	9	Unmodified	_PYADHYSTF_					0	0	0		nc|ENSG00000056586|Q9HBD1-4|RC3H2;nc|ENSG00000056586|Q9HBD1-6|RC3H2;ENSG00000056586|ENST00000357244|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7385864257812	2	550.737814	1099.46108	0.36722	0.00020224	2.1083	0.0011611	2.4755	0.0013634	550.739008061306	95.498	0.4741	95.537	95.364	95.838	0.038872					37	21	2	0	0	0	0.045114	1	24036	24036		44.407	15.92	1	413920			15916	7455	10516	10629	21463	21463					-0.08467699724474187
PYADQVFRI	9	Unmodified	_PYADQVFRI_					0	0	0		nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ	nc|ENSG00000198265|P42694-2|HELZ	nc|ENSG00000198265|P42694-2|HELZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7930908203125	2	554.792924	1107.57129	0.43889	0.00024349	-0.79965	-0.00044364	-0.36076	-0.00020014	554.7925011075802	60.323	0.41828	60.396	60.211	60.629	0.073421					19	14	2	0	0	0	0.11198	1	13330	13330		29.841	12.728	1	94020			15917	5357	10517	10630	21464	21464					0.021811453345662812
PYADQVFRI	9	Unmodified	_PYADQVFRI_					0	0	0		nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ	nc|ENSG00000198265|P42694-2|HELZ	nc|ENSG00000198265|P42694-2|HELZ	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	554.792924	1107.57129	0.62037	0.00034418	-1.7046	-0.0009457	-1.0842	-0.00060152	554.7922328444329	60.471	0.40458	60.471	60.238	60.643	0	0.037475	-0.00059815	NaN	29.841	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110940			15918	5357	10517	10630							0.021811453345662812
PYAHNKHL	8	Unmodified	_PYAHNKHL_					0	0	0			REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.25811767578125	2	490.259051	978.503549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.44	1	103.48	102.98	103.98	0.03791								0	0	0	0.38822	1	26420	26420		2.5775	0.27475	1		+		15919	8464	10518	10631	21465	21465					0.013437401944315752
PYAIAPAWTI	10	Unmodified	_PYAIAPAWTI_					0	0	0			REV__nc|ENSG00000141867|O60885-3|BRD4	REV__nc|ENSG00000141867|O60885-3|BRD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.8007202148438	2	551.800217	1101.58588	0.73336	0.00040467	-0.065556	-3.6174E-05	0.6678	0.00036849	551.8001498603784	82.129	0.88677	82.129	81.836	82.723	0					46	31	2	0	0	0	0.36288	1	20110	20110		15.847	15.847	1	182020	+		15920	12804	10519	10632	21466	21466					0.03915217482699518
PYAIFALDF	9	Unmodified	_PYAIFALDF_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2921142578125	2	528.773668	1055.53278	0.52432	0.00027725	0.87866	0.00046461	1.403	0.00074186	529.2756954648838	97.125	0.11269	97.165	97.076	97.189	0.040848					5	4	2	0	0	0	0.25051	1	24508	24508		7.9102	0	1	25869	+		15921	11123	10520	10633	21467	21467					0.00723839700026474
PYAKPIPAQF	10	Unmodified	_PYAKPIPAQF_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.3139038085938	2	566.313492	1130.61243	0.13411	7.595E-05	0.081021	4.5883E-05	0.21513	0.00012183	566.31337518836	49.778	0.37487	49.778	49.621	49.996	0					27	12	3	0	0	0	0.055325	2	10245	10245;10296		56.177	38.042	1	123310			15922	2803	10521	10634	21468;21469	21468					0.05234906374039383
PYAKPIPAQF	10	Unmodified	_PYAKPIPAQF_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.3131713867188	2	566.313492	1130.61243	0.15486	8.7697E-05	0.17525	9.9247E-05	0.33011	0.00018694	566.313572920435	49.727	0.44782	49.8	49.622	50.069	0.07312					23	15	2	0	0	0	0.11192	1	10114	10114		43.858	33.034	1	128690			15923	2803	10521	10634	21470	21470					0.05234906374039383
PYAQQLRVF	9	Unmodified	_PYAQQLRVF_					0	0	0		ENST00000433302.7_1_17:5357282-5372070:-|nuORF;ENST00000575153.5_1_17:5347527-5364435:-|nuORF;nc|ENSG00000005100|Q9H6R0-2|DHX33;ENSG00000005100|ENST00000225296|DHX33	ENST00000433302.7_1_17:5357282-5372070:-|nuORF	ENST00000433302.7_1_17:5357282-5372070:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7835693359375	2	561.308741	1120.60293	0.63165	0.00035455	1.672	0.00093849	2.3036	0.001293	561.8110164311996	54.691	0.29826	54.691	54.573	54.871	0					23	12	3	0	0	0	0.23598	1	11757	11757		15.847	6.4997	1	67596			15924	346	10522	10635	21471	21471					0.047451380885149774
PYARHYYF	8	Unmodified	_PYARHYYF_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.767333984375	2	558.766709	1115.51886	0.63659	0.0003557	-0.11071	-6.1863E-05	0.52587	0.00029384	558.7665986563904	82.474	1.8469	82.474	81.931	83.778	0					142	64	3	0	0	0	0.44023	1	20375	20375		20.871	2.7362	1	1113500			15925	2816	10523	10636	21472	21472					-0.03427393008382751
PYCGARNLD	9	Unmodified	_PYCGARNLD_					0	0	0		nc|ENSG00000158717|Q96A37-2|RNF166;nc|ENSG00000158717|Q96A37-3|RNF166;ENSG00000158717|ENST00000312838|RNF166	nc|ENSG00000158717|Q96A37-2|RNF166	nc|ENSG00000158717|Q96A37-2|RNF166	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2636413574219	2	504.732009	1007.44946	0.19777	9.9819E-05	0.50496	0.00025487	0.70273	0.00035469	504.73220705531486	68.898	0.3885	68.96	68.693	69.082	0.062119					25	14	2	0	0	0	0.25174	1	15848	15848		7.2892	7.2892	1	142740			15926	3702	10524	10637	21473	21473					-0.0539622001947464
PYCPRALN	8	Unmodified	_PYCPRALN_					0	0	0		ENST00000528173.5_1_11:46400622-46401494:+|nuORF	ENST00000528173.5_1_11:46400622-46401494:+|nuORF	ENST00000528173.5_1_11:46400622-46401494:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.23394775390625	2	467.234187	932.453822	0.20875	9.7533E-05	-1.3531	-0.0006322	-1.1443	-0.00053467	467.23355911451597	63.477	0.79234	63.549	63.323	64.115	0.071018					46	27	2	0	0	0	0.53423	1	14341	14341		5.2307	0	1	616690			15927	7011	10525	10638	21474	21474					-0.015107108059055463
PYCSTVFF	8	Unmodified	_PYCSTVFF_					0	0	0			REV__ENSG00000141376|ENST00000407086|BCAS3	REV__ENSG00000141376|ENST00000407086|BCAS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7159423828125	2	482.217672	962.42079	-0.22284	-0.00010746	-1.3893	-0.00066993	-1.6121	-0.00077739	482.2172179118495	34.363	2.0097	34.363	33.883	35.892	0					107	76	2	0	0	0	0.35759	1	5574	5574		10.183	0	1	46146	+		15928	9395	10526	10639	21475	21475					-0.06192337648587909
PYDDLLQII	9	Unmodified	_PYDDLLQII_					0	0	0			REV__ENST00000448115.1_1_1:220490746-220490923:-|nuORF	REV__ENST00000448115.1_1_1:220490746-220490923:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2947387695312	2	545.294965	1088.57538	0.40189	0.00021915	1.1729	0.0006396	1.5748	0.00085875	545.2950997418685	71.416	0.56543	71.416	71.135	71.701	0					43	19	3	0	0	0	0.30005	1	16882	16882		6.7232	0	1	179250	+		15929	8293	10527	10640	21476	21476					0.034631900376325575
PYDDLLQII	9	Unmodified	_PYDDLLQII_					0	0	0			REV__ENST00000448115.1_1_1:220490746-220490923:-|nuORF	REV__ENST00000448115.1_1_1:220490746-220490923:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.294965	1088.57538	0.43274	0.00023597	0.60858	0.00033185	1.0413	0.00056782	545.2948238704297	71.284	0.51279	71.342	71.056	71.569	0.058578	-0.037069	-0.00042564	NaN	6.7232	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120100	+		15930	8293	10527	10640							0.034631900376325575
PYEKKAVW	8	Unmodified	_PYEKKAVW_					0	0	0		ENST00000507778.1_1_4:41844266-41844645:-|nuORF	ENST00000507778.1_1_4:41844266-41844645:-|nuORF	ENST00000507778.1_1_4:41844266-41844645:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.77874755859375	2	510.779285	1019.54402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.608	1	31.682	31.182	32.182	0.073782								0	0	0	0.38822	1	4653	4653		0.79363	0	1				15931	6895	10528	10641	21477	21477					0.0350266179417531
PYERDPWW	8	Unmodified	_PYERDPWW_					0	0	0		ENST00000563829.5_1_15:75145696-75145942:-|nuORF	ENST00000563829.5_1_15:75145696-75145942:-|nuORF	ENST00000563829.5_1_15:75145696-75145942:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7609252929688	2	574.761623	1147.50869	-0.2529	-0.00014536	-0.47306	-0.00027189	-0.72596	-0.00041725	574.7613273643636	23.368	1.0929	23.368	23.15	24.243	0					197	102	4	0	0	0	0.5411	1	2607	2607		0.6015	0.076735	1	121550			15932	7170	10529	10642	21478	21478					-0.0591600073362315
PYEYLGTFD	9	Unmodified	_PYEYLGTFD_					0	0	0		tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2566528320312	2	552.747847	1103.48114	0.9315	0.00051488	-2.5282	-0.0013975	-1.5967	-0.00088257	552.7465072144955	81.158	0.73189	81.158	80.813	81.545	0					49	24	3	0	0	0	0.24635	1	19789	19789		10.824	2.9138	1	121870			15933	13621	10530	10643	21479	21479					-0.06645948784512257
PYFALQSLY	9	Unmodified	_PYFALQSLY_					0	0	0			REV__ENSG00000165972|ENST00000344280|CCDC38	REV__ENSG00000165972|ENST00000344280|CCDC38	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7713012695312	2	551.2844	1100.55425	0.41745	0.00023014	-0.69854	-0.00038509	-0.28109	-0.00015496	551.2840481701048	37.096	1.062	37.18	36.922	37.984	0.084476					82	37	4	0	0	0	0.28587	1	6403	6403		8.5933	4.264	1	284660	+		15934	10055	10531	10644	21480	21480					0.007992247287802456
PYFERLLKEA	10	Unmodified	_PYFERLLKEA_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3604125976562	2	633.348063	1264.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.77	1	101.77	101.27	102.27	0								0	0	0	0.32971	1	26086	26086		12.241	0	1		+		15935	10140	10532	10645	21481	21481					0.05981945602934502
PYFERLLKEA	10	Unmodified	_PYFERLLKEA_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.361083984375	2	633.348063	1264.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.61	1	101.65	101.15	102.15	0.042656								0	0	0	0.32971	1	25881	25881		12.241	0	1		+		15936	10140	10532	10645	21482	21482					0.05981945602934502
PYFERLLKEA	10	Unmodified	_PYFERLLKEA_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.360595703125	2	633.348063	1264.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.74	1	101.78	101.28	102.28	0.042656								0	0	0	0.32971	1	25918	25918		12.241	0	1		+		15937	10140	10532	10645	21483	21483					0.05981945602934502
PYFLVPLE	8	Unmodified	_PYFLVPLE_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2560119628906	2	489.270761	976.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.733	1	31.733	31.233	32.233	0								0	0	0	0.38822	1	4811	4811		6.3541	0	1		+		15938	10025	10533	10646	21484	21484					0.03776741188357846
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2789306640625	2	542.279118	1082.54368	0.59903	0.00032484	0.42155	0.0002286	1.0206	0.00055344	542.2792811511467	79.561	0.79749	79.561	79.372	80.169	0					90	27	4	0	0	0	0.004541	5	19305	19295;19305;19352;19398;19421		89.427	56.641	1	2743400			15939	1633	10534	10647	21485;21486;21487;21488;21489	21486					0.0057124207430661045
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2794799804688	2	542.279118	1082.54368	0.37779	0.00020487	0.62844	0.00034079	1.0062	0.00054565	542.279375170286	79.54	0.80285	79.567	79.388	80.191	0.026428					83	28	4	0	0	0	0.0042188	5	19183	19140;19183;19232;19247;19275		101.72	77.984	1	2923700			15940	1633	10534	10647	21490;21491;21492;21493;21494	21491					0.0057124207430661045
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.807861328125	2	542.279118	1082.54368	0.72941	0.00039554	0.21201	0.00011497	0.94142	0.00051051	542.2787904911844	80.345	1.0099	80.368	80.188	81.198	0.023613					44	35	2	0	0	0	0.2446	1	19523	19523		11.64	0.81637	1	106550			15941	1633	10534	10647	21495	21495					0.0057124207430661045
PYFPHKAD	8	Unmodified	_PYFPHKAD_					0	0	0			REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7262268066406	2	487.74016	973.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.969	1	28.969	28.469	29.469	0								0	0	0	0.38822	1	3995	3995		0.79363	0	1		+		15942	9359	10535	10648	21496	21496					-0.022027707910638128
PYFSKVENI	9	Unmodified	_PYFSKVENI_					0	0	0		tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1	tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1	tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.265380859375	2	548.787307	1095.56006	0.45061	0.00024729	-0.20101	-0.00011031	0.2496	0.00013698	548.7871707772103	75.362	0.45013	75.406	75.169	75.619	0.044037					26	16	2	0	0	0	0.24438	1	17829	17829		13.615	4.2674	1	181740			15943	13733	10536	10649	21497	21497					0.016103232404248047
PYFTATPRSF	10	Unmodified	_PYFTATPRSF_					0	0	0		ENSG00000204449|ENST00000448984|TRIM49C;ENSG00000182053|ENST00000332682|TRIM49B;ENSG00000168930|ENST00000329758|TRIM49	ENSG00000204449|ENST00000448984|TRIM49C	ENSG00000204449|ENST00000448984|TRIM49C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2894287109375	2	593.798206	1185.58186	0.53893	0.00032002	0.81541	0.00048419	1.3543	0.00080421	593.797717226175	64.64	1.0896	64.64	64.382	65.472	0					105	39	4	0	0	0	0.36006	1	14761	14761		16.149	0.30192	1	385490			15944	4315	10537	10650	21498	21498					-0.003508720110176
PYFYAPELLF	10	Unmodified	_PYFYAPELLF_					0	0	0		CON__P02768-1;ENSG00000163631|ENST00000295897|ALB	CON__P02768-1	CON__P02768-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.3216552734375	2	630.320983	1258.62741	0.28496	0.00017962	0.45435	0.00028639	0.73931	0.000466	630.3211799656021	100.12	0.44795	100.12	99.915	100.36	0					56	23	3	0	0	0	0.28878	1	25561	25561		25.399	13.159	1	236430		+	15945	217	10538	10651	21499	21499					0.008443534513617124
PYFYAPELLF	10	Unmodified	_PYFYAPELLF_					0	0	0		CON__P02768-1;ENSG00000163631|ENST00000295897|ALB	CON__P02768-1	CON__P02768-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3213500976562	2	630.320983	1258.62741	0.49505	0.00031204	0.16651	0.00010495	0.66156	0.00041699	630.3209662486013	100.06	0.54005	100.1	99.903	100.44	0.042831					62	28	3	0	0	0	0.30541	1	25400	25400		19.257	13.051	1	208930		+	15946	217	10538	10651	21500	21500					0.008443534513617124
PYGCLPTGDHT	11	Unmodified	_PYGCLPTGDHT_					0	0	0		PIK3CD|p.R821H|1|0.11|ENSG00000171608|chr1:9723160-9723160|G/A|missense_variant	PIK3CD|p.R821H|1|0.11|ENSG00000171608|chr1:9723160-9723160|G/A|missense_variant	PIK3CD|p.R821H|1|0.11|ENSG00000171608|chr1:9723160-9723160|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.271484375	2	580.755681	1159.49681	-0.070865	-4.1155E-05	1.6164	0.00093874	1.5455	0.00089758	580.7564226122008	40.946	0.77254	41.035	40.626	41.398	0.089645					33	28	2	0	0	0	0.31072	1	7536	7536		3.5965	0.70727	1	40566			15947	7669	10539	10652	21501	21501					-0.07655985539145149
PYGDIVDDEL	10	Unmodified	_PYGDIVDDEL_					0	0	0			REV__ENSG00000137869|ENST00000396402|CYP19A1	REV__ENSG00000137869|ENST00000396402|CYP19A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2615966796875	2	568.261319	1134.50808	0.45674	0.00025955	0.22111	0.00012565	0.67786	0.0003852	568.2617463290605	55.104	1.4151	55.169	54.65	56.066	0.065128					122	55	3	0	0	0	0.37232	1	11839	11839		14.838	0.93222	1	261900	+		15948	9293	10540	10653	21502	21502					-0.053788849639886394
PYGLYKAPI	9	Unmodified	_PYGLYKAPI_					0	0	0			REV__nc|ENSG00000128052|P35968-2|KDR	REV__nc|ENSG00000128052|P35968-2|KDR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2882080078125	2	511.289485	1020.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.75	1	54.75	54.25	55.25	0								0	0	0	0.22979	1	11761	11761		13.508	0.46542	1		+		15949	9010	10541	10654	21503	21503					0.054958324539938985
PYGNIQSRL	9	Unmodified	_PYGNIQSRL_					0	0	0		ENSG00000143641|ENST00000366672|GALNT2;ENST00000492568.1_1_1:230398346-230398752:+|nuORF	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.281982421875	2	524.282723	1046.55089	-0.59204	-0.00031039	-0.79596	-0.00041731	-1.388	-0.00072771	524.2822963147361	41.636	0.87423	41.636	41.459	42.333	0					70	31	4	0	0	0	0.02143	1	7762	7762		57.249	31.85	1	330930			15950	3176	10542	10655	21504	21504					0.02947974674748366
PYGNIQSRL	9	Unmodified	_PYGNIQSRL_					0	0	0		ENSG00000143641|ENST00000366672|GALNT2;ENST00000492568.1_1_1:230398346-230398752:+|nuORF	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2821044921875	2	524.282723	1046.55089	-0.50053	-0.00026242	-0.76696	-0.00040211	-1.2675	-0.00066452	524.282369305103	41.558	0.54264	41.648	41.451	41.994	0.089764					59	22	4	0	0	0	0.09598	1	7607	7607		47.594	22.195	1	268630			15951	3176	10542	10655	21505	21505					0.02947974674748366
PYGSDFIRSI	10	Unmodified	_PYGSDFIRSI_					0	0	0			REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF	REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.795166015625	2	577.795663	1153.57677	0.2928	0.00016918	0.025831	1.4925E-05	0.31863	0.0001841	577.7954649586665	78.744	0.50781	78.744	78.54	79.047	0					41	17	3	0	0	0	0.4101	1	19122	19122		10.8	1.4164	1	535640	+		15952	7973	10543	10656	21506	21506					0.006128241263922973
PYGSDFIRSI	10	Unmodified	_PYGSDFIRSI_					0	0	0			REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF	REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.795654296875	2	577.795663	1153.57677	0.2928	0.00016918	0.025831	1.4925E-05	0.31863	0.0001841	577.7954649586665	78.744	0.50781	78.744	78.54	79.047	0					41	17	3	0	0	0	0.31481	1	19063	19063		15.248	15.248	1	535640	+		15953	7973	10543	10656	21507	21507					0.006128241263922973
PYGSDFIRSI	10	Unmodified	_PYGSDFIRSI_					0	0	0			REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF	REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7957153320312	2	577.795663	1153.57677	0.41728	0.0002411	-0.28326	-0.00016367	0.13402	7.7434E-05	577.7953666802774	78.74	0.69017	78.77	78.536	79.226	0.030159					39	23	3	0	0	0	0.28859	2	18905	18905;18978		23.79	2.2528	1	611090	+		15954	7973	10543	10656	21508;21509	21508					0.006128241263922973
PYGYLNDVF	9	Unmodified	_PYGYLNDVF_					0	0	0			REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2849731445312	2	544.258382	1086.50221	0.64804	0.0003527	1.9269	0.0010487	2.5749	0.0014014	544.2579089436853	80.9	0.71786	80.923	80.592	81.31	0.023605					45	24	3	0	0	0	0.14091	1	19561	19561		25.399	3.6527	1	255480	+		15955	10186	10544	10657	21510	21510					-0.037579386849984076
PYGYLNDVF	9	Unmodified	_PYGYLNDVF_					0	0	0			REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	544.258382	1086.50221	0.83423	0.00045403	1.9132	0.0010413	2.7474	0.0014953	544.2582242732136	80.865	0.55641	80.865	80.646	81.202	0	-0.029334	-5.8696E-06	NaN	25.399	39	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165980	+		15956	10186	10544	10657							-0.037579386849984076
PYIATTTMGF	10	Unmodified	_PYIATTTMGF_					0	0	0			REV__ENSG00000121318|ENST00000240619|TAS2R10	REV__ENSG00000121318|ENST00000240619|TAS2R10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2577514648438	2	551.267893	1100.52123	0.38175	0.00021045	0.19435	0.00010714	0.5761	0.00031759	551.267997910942	77.886	0.93356	77.886	77.634	78.568	0					75	31	4	0	0	0	0.3077	1	18892	18892		21.747	0	1	1793800	+		15957	8897	10545	10658	21511	21511					-0.025007253856074385
PYIDRFVI	8	Unmodified	_PYIDRFVI_					0	0	0		tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7886047363281	2	511.78711	1021.55967	0.60109	0.00030763	2.0336	0.0010408	2.6347	0.0013484	511.7881567754724	64.996	0.85912	64.996	64.664	65.523	0					50	31	2	0	0	0	0.46788	1	14870	14870		17.113	3.2068	1	142780			15958	13447	10546	10659	21512	21512					0.0497494831122367
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3082275390625	2	548.307875	1094.6012	0.84969	0.00046589	0.16599	9.1014E-05	1.0157	0.00055691	548.3078318866961	84.608	0.74888	84.608	84.441	85.189	0					97	34	4	0	0	0	0.0045534	3	20869	20826;20869;20912		88.954	48.997	1	2817700			15959	932	10547	10660	21513;21514;21515	21514					0.05768084279884533
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3084106445312	2	548.307875	1094.6012	0.58938	0.00032316	0.46219	0.00025342	1.0516	0.00057658	548.3079860326995	84.581	1.0637	84.605	84.463	85.527	0.023125					121	55	4	0	0	0	0.0042692	4	20702	20665;20702;20744;20902		99.799	55.941	1	2609900			15960	932	10547	10660	21516;21517;21518;21519	21517					0.05768084279884533
PYISPLAYT	9	Unmodified	_PYISPLAYT_					0	0	0			REV__nc|ENSG00000011405|O00443-2|PIK3C2A	REV__nc|ENSG00000011405|O00443-2|PIK3C2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7733154296875	2	512.771126	1023.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.73	1	105.76	105.26	106.26	0.029739								0	0	0	0.28527	1	27061	27061		2.0598	0	1		+		15961	7981	10548	10661	21520	21520					0.016875358374250027
PYISQCANEI	10	Unmodified	_PYISQCANEI_					0	0	0			REV__ENST00000488297.2_1_5:87678278-87678506:+|nuORF	REV__ENST00000488297.2_1_5:87678278-87678506:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7943115234375	2	569.265881	1136.51721	0.17262	9.8268E-05	-0.17292	-9.8437E-05	-0.00029764	-1.6943E-07	569.2659300268631	60.252	1.2847	60.326	59.826	61.11	0.073421					79	45	2	0	0	0	0.31219	1	13396	13396		17.113	2.2746	1	301300	+		15962	12132	10549	10662	21521	21521					-0.04558814879305828
PYIYVNQII	9	Unmodified	_PYIYVNQII_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8026733398438	2	561.813325	1121.6121	0.46586	0.00026173	0.33848	0.00019016	0.80434	0.00045189	561.8134370701209	74.937	0.42335	74.981	74.812	75.235	0.044037					30	15	3	0	0	0	0.11022	1	17736	17736		30.225	5.2339	1	435090			15963	2345	10550	10663	21522	21522					0.05615486654187407
PYKVTQDEL	9	Unmodified	_PYKVTQDEL_					0	0	0		ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENSG00000115053|ENST00000322723|NCL	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7821044921875	2	546.782222	1091.54989	-0.15928	-8.7089E-05	0.38946	0.00021295	0.23018	0.00012586	546.7821487365165	40.221	0.9573	40.221	39.954	40.911	0					87	33	4	0	0	0	0.0060378	2	7375	7330;7375		79.427	41.251	1	441230			15964	1871	10551	10664	21523;21524	21524					0.007777155151643456
PYKVTQDEL	9	Unmodified	_PYKVTQDEL_					0	0	0		ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENSG00000115053|ENST00000322723|NCL	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7822265625	2	546.782222	1091.54989	-0.017466	-9.5501E-06	0.43116	0.00023575	0.41369	0.0002262	546.7821686271658	40.108	0.80719	40.197	39.993	40.8	0.088566					86	30	4	0	0	0	0.00069152	2	7210	7166;7210		128.57	80.824	1	361710			15965	1871	10551	10664	21525;21526	21526					0.007777155151643456
PYLDKFFAL	9	Unmodified	_PYLDKFFAL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3028564453125	2	557.302593	1112.59063	0.41178	0.00022949	0.17876	9.9625E-05	0.59055	0.00032911	557.3024952388538	78.159	0.63933	78.159	77.928	78.568	0					44	21	3	0	0	0	0.0097877	1	18894	18894		67.838	35.533	1	311760			15966	1964	10552	10665	21527	21527					0.03884101625476433
PYLDKFFAL	9	Unmodified	_PYLDKFFAL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.302978515625	2	557.302593	1112.59063	0.68434	0.00038139	-0.29292	-0.00016325	0.39142	0.00021814	557.3023767704392	78.16	0.53799	78.19	77.938	78.476	0.030159					42	18	3	0	0	0	0.012041	2	18722	18722;18771		63.961	24.003	1	306860			15967	1964	10552	10665	21528;21529	21528					0.03884101625476433
PYLDKFFTL	9	Unmodified	_PYLDKFFTL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.307861328125	2	572.307875	1142.6012	0.24881	0.0001424	-0.050777	-2.906E-05	0.19804	0.00011334	572.3077435224063	78.172	0.58362	78.172	77.928	78.512	0					57	19	4	0	0	0	1.2368E-07	1	18889	18889		148.27	80.187	1	1038000			15968	2453	10553	10666	21530	21530					0.0356008427991128
PYLDKFFTL	9	Unmodified	_PYLDKFFTL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3079833984375	2	572.307875	1142.6012	0.44793	0.00025635	-0.23689	-0.00013558	0.21103	0.00012078	572.3076387102342	78.211	0.57085	78.241	77.905	78.476	0.030151					57	19	4	0	0	0	0.0017715	1	18734	18734		100.09	56.232	1	910360			15969	2453	10553	10666	21531	21531					0.0356008427991128
PYLDSFYEY	9	Unmodified	_PYLDSFYEY_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3403930664062	2	598.760955	1195.50736	0.35238	0.00021099	-0.77655	-0.00046497	-0.42417	-0.00025398	598.7603066502712	75.978	0.28433	75.978	75.797	76.081	0					26	25	2	0	0	0	0.055474	1	18229	18229		58.679	36.932	1	842640			15970	5638	10554	10667	21532	21532					-0.08257679613029723
PYLDSFYEY	9	Unmodified	_PYLDSFYEY_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3397216796875	2	598.760955	1195.50736	0.30069	0.00018004	-0.54823	-0.00032826	-0.24754	-0.00014822	598.7602891407003	75.91	0.25203	75.954	75.837	76.089	0.044037					26	19	2	0	0	0	0.081719	1	18061	18061		49.933	22.304	1	650730			15971	5638	10554	10667	21533	21533					-0.08257679613029723
PYLFGFCL	8	Unmodified	_PYLFGFCL_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|70|1|anti-sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|70|1|anti-sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|70|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2373046875	2	480.238407	958.462261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.707	1	44.794	44.294	45.294	0.08754								0	0	0	0.38822	1	8585	8585		2.8892	0.31174	1				15972	7385	10555	10668	21534	21534					-0.018631568892601535
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8031616210938	2	561.80276	1121.59097	0.45492	0.00025558	0.25774	0.0001448	0.71267	0.00040038	561.8028557234118	74.623	1.4221	74.623	74.341	75.763	0					147	54	4	0	0	0	4.2663E-13	3	17819	17819;17859;18132		189.49	153.37	1	6518500			15973	5247	10556	10669	21535;21536;21537	21535					0.035035213453284086
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.80322265625	2	561.80276	1121.59097	0.48015	0.00026975	0.2269	0.00012747	0.70704	0.00039722	561.8028353560877	74.61	1.3157	74.659	74.369	75.684	0.048546					129	47	4	0	0	0	4.2663E-13	2	17651	17651;17694		189.49	145.63	1	5947400			15974	5247	10556	10669	21538;21539	21538					0.035035213453284086
PYLGKYKAGF	10	Unmodified	_PYLGKYKAGF_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3260498046875	2	572.313492	1142.61243	-0.011984	-6.8586E-06	0.40374	0.00023106	0.39175	0.0002242	572.3137446940423	71.978	1.1067	71.978	71.92	73.027	0					51	38	2	0	0	0	0.3939	2	17034	17034;17082		12.532	3.1484	1	151270			15975	2906	10557	10670	21540;21541	21540					0.04682906374023332
PYLGKYKAGF	10	Unmodified	_PYLGKYKAGF_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3260498046875	2	572.313492	1142.61243	0.13396	7.667E-05	0.46885	0.00026833	0.60281	0.000345	572.31398155177	71.907	0.80086	71.963	71.893	72.694	0.055939					36	27	2	0	0	0	0.3939	2	16851	16851;16900		12.532	1.7076	1	94809			15976	2906	10557	10670	21542;21543	21542					0.04682906374023332
PYLHVGTELD	10	Unmodified	_PYLHVGTELD_					0	0	0			REV__CDC40|p.D73Y|1|0.19|ENSG00000168438|chr6:110193209-110193209|G/T|missense_variant	REV__CDC40|p.D73Y|1|0.19|ENSG00000168438|chr6:110193209-110193209|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3068237304688	2	572.287671	1142.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.482	1	78.482	77.982	78.982	0								0	0	0	0.31427	1	19000	19000		15.847	1.0089	1		+		15977	7753	10558	10671	21544	21544					-0.004788821105421448
PYLLDLHLF	9	Unmodified	_PYLLDLHLF_					0	0	0		nc|ENSG00000123064|Q8TDD1-2|DDX54;ENSG00000123064|ENST00000306014|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8161010742188	2	565.815867	1129.61718	0.42128	0.00023837	0.24165	0.00013673	0.66293	0.0003751	565.8159910884381	88.24	0.95149	88.24	87.948	88.9	0					61	37	3	0	0	0	0.0037915	1	21985	21985		104.8	76.312	1	909090			15978	2202	10559	10672	21545	21545					0.05755790516809611
PYLLDLHLF	9	Unmodified	_PYLLDLHLF_					0	0	0		nc|ENSG00000123064|Q8TDD1-2|DDX54;ENSG00000123064|ENST00000306014|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.816162109375	2	565.815867	1129.61718	0.29178	0.00016509	0.35403	0.00020032	0.64581	0.00036541	565.8159958548453	88.125	0.90604	88.155	87.965	88.871	0.030037					63	35	3	0	0	0	0.00052627	2	21782	21782;21834		131.3	94.792	1	1242700			15979	2202	10559	10672	21546;21547	21546					0.05755790516809611
PYLLHFSND	9	Unmodified	_PYLLHFSND_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7902221679688	2	553.269281	1104.52401	0.68227	0.00037748	2.7341	0.0015127	3.4164	0.0018902	553.271047802459	79.555	0.41817	79.555	79.424	79.842	0					36	14	3	0	0	0	0.16944	1	19364	19364		30.637	5.2372	1	359850			15980	5224	10560	10673	21548	21548					-0.02407133936435457
PYLLISTQI	9	Unmodified	_PYLLISTQI_					0	0	0		nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.3079833984375	2	524.307875	1046.6012	0.79388	0.00041624	-0.62295	-0.00032662	0.17093	8.9622E-05	524.3073839675861	80.813	1.752	80.813	80.228	81.98	0					92	33	4	0	0	0	0.010235	2	19717	19717;19761		66.457	30.33	1	1793100			15981	2878	10561	10674	21549;21550	21549					0.07976084279903262
PYLLISTQI	9	Unmodified	_PYLLISTQI_					0	0	0		nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.307861328125	2	524.307875	1046.6012	0.50205	0.00026323	-0.59399	-0.00031144	-0.091943	-4.8207E-05	524.3073967919677	80.801	1.8272	80.825	80.219	82.046	0.023605					132	54	4	0	0	0	0.010235	2	19551	19551;19598		66.457	37.375	1	1795400			15982	2878	10561	10674	21551;21552	21551					0.07976084279903262
PYLPNQIQL	9	Unmodified	_PYLPNQIQL_					0	0	0			REV__ENSG00000170075|ENST00000367282|GPR37L1	REV__ENSG00000170075|ENST00000367282|GPR37L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3030395507812	2	543.303124	1084.5917	0.44852	0.00024368	-0.0022998	-1.2495E-06	0.44622	0.00024243	543.3030264433133	67.64	1.5398	67.64	67.348	68.888	0					156	57	4	0	0	0	0.18364	2	15937	15937;16053		20.454	2.3073	1	3006100	+		15983	10200	10562	10675	21553;21554	21553					0.05278315994382865
PYLSEVLTF	9	Unmodified	_PYLSEVLTF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.784423828125	2	534.784233	1067.55391	0.1426	7.6259E-05	0.18841	0.00010076	0.33101	0.00017702	534.7842699035175	86.842	0.68816	86.842	86.66	87.348	0					48	29	3	0	0	0	0.0076571	1	21564	21564		74.423	28.402	1	462880			15984	5226	10563	10676	21555	21555					0.02283805008892159
PYLSEVLTF	9	Unmodified	_PYLSEVLTF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7841186523438	2	534.784233	1067.55391	0.41355	0.00022116	0.075937	4.061E-05	0.48948	0.00026177	534.7840483403503	86.832	0.58963	86.859	86.609	87.199	0.027573					50	26	3	0	0	0	0.0046476	1	21377	21377		85.357	30.583	1	417600			15985	5226	10563	10676	21556	21556					0.02283805008892159
PYLWESLPL	9	Unmodified	_PYLWESLPL_					0	0	0			REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2997436523438	2	559.30005	1116.58555	0.67485	0.00037744	-1.0063	-0.00056284	-0.33148	-0.0001854	559.2991651750083	84.556	0.30839	84.579	84.522	84.83	0.023125					31	20	2	0	0	0	0.1182	1	20706	20706		28.487	3.0875	1	501610	+		15986	11850	10564	10677	21557	21557					0.03191797762860915
PYLWWKKYI	9	Unmodified	_PYLWWKKYI_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.2437438964844	3	432.909498	1295.70667	0.89503	0.00038747	-1.0869	-0.00047051	-0.19182	-8.3041E-05	432.908943407446	66.147	0.64311	66.147	65.936	66.579	0					41	23	3	0	0	0	0.17428	2	15207	15207;15259		21.537	11.97	1	196700			15987	440	10565	10678	21558;21559	21558					0.07064045196193547
PYLWWKKYI	9	Unmodified	_PYLWWKKYI_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.9091796875	3	432.909498	1295.70667	0.44035	0.00019063	-0.77302	-0.00033465	-0.33267	-0.00014401	432.90906629391327	66.154	0.47707	66.221	65.999	66.476	0.066872					48	17	3	0	0	0	0.07372	2	15101	15101;15121		38.176	23.218	1	161160			15988	440	10565	10678	21560;21561	21560					0.07064045196193547
PYLYDFLDA	9	Unmodified	_PYLYDFLDA_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.766845703125	2	558.76604	1115.51753	0.90389	0.00050506	0.94505	0.00052806	1.8489	0.0010331	558.7664191367983	81.358	0.95696	81.358	81.023	81.98	0					83	32	3	0	0	0	0.14718	1	19941	19941		24.674	2.9272	1	485290			15989	5243	10566	10679	21562	21562					-0.03561071887793332
PYLYDFLDA	9	Unmodified	_PYLYDFLDA_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7666625976562	2	558.76604	1115.51753	0.67251	0.00037578	1.1537	0.00064463	1.8262	0.0010204	558.7665687351877	81.375	0.85571	81.397	81.049	81.905	0.021866					75	30	3	0	0	0	0.14718	1	19817	19817		24.674	6.5389	1	566670			15990	5243	10566	10679	21563	21563					-0.03561071887793332
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(82)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.29150390625	2	559.291171	1116.56779	0.63369	0.00035442	-0.45423	-0.00025405	0.17946	0.00010037	559.2908564457903	64.54	0.70442	64.54	64.137	64.842	0					61	24	3	0	0	0	0.0053304	3	14697	14697;14745;14799		81.613	50.977	1	749450			15991	3449;3245	10567	10680	21564;21565;21566	21564		211			0.014167592363264703
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(93)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2913818359375	2	559.291171	1116.56779	0.59804	0.00033448	-0.34726	-0.00019422	0.25078	0.00014026	559.2909297130418	64.427	0.67396	64.496	64.141	64.815	0.068916					77	24	4	0	0	0	0.004452	4	14598	14505;14554;14598;14660		92.822	58.72	1	709070			15992	3449;3245	10567	10680	21567;21568;21569;21570	21569		211			0.014167592363264703
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(42)ANVYLI	0	0	1		nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469-3|PLOD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2781982421875	2	550.27826	1098.54197	0.28877	0.0001589	-0.092635	-5.0975E-05	0.19613	0.00010793	550.2781538095576	71.774	0.41582	71.774	71.556	71.972	0					35	14	3	0	0	0	0.05573	1	16943	16943		42.095	16.695	1	367620			15993	3509;6728	10568	10681	21571	21571		223			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(44)ANVYLI	0	0	1		nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469-3|PLOD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2786865234375	2	550.27826	1098.54197	0.35472	0.00019519	1.125	0.00061905	1.4797	0.00081424	550.2789926484212	73.285	0.84346	73.338	73.123	73.966	0.052574					76	32	3	0	0	0	0.045114	1	17253	17253		44.407	19.733	1	474980			15994	3509;6728	10568	10681	21572	21572		223			-0.003361350059549295
PYMAYLEI	8	Unmodified	_PYMAYLEI_					0	0	0		ENSG00000092009|ENST00000250378|CMA1	ENSG00000092009|ENST00000250378|CMA1	ENSG00000092009|ENST00000250378|CMA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.24761962890625	2	500.246429	998.478305	0.37084	0.00018551	3.5503	0.001776	3.9211	0.0019615	500.2479715544094	47.848	0.42965	47.848	47.64	48.07	0					19	14	2	0	0	0	0.35759	1	9672	9672		9.3474	0.75416	1	79754			15995	1068	10569	10682	21573	21573					-0.020994954430534563
PYMDSPQSIGF	11	Oxidation (M)	_PYM(Oxidation (M))DSPQSIGF_		PYM(1)DSPQSIGF		PYM(42)DSPQSIGF	0	0	1		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.2763061523438	2	629.276446	1256.53834	0.22225	0.00013986	0.023632	1.4871E-05	0.24588	0.00015473	629.276211841151	62.439	0.70932	62.439	62.203	62.912	0					54	25	3	0	0	0	0.12206	1	14120	14120		42.312	28.406	1	396980			15996	2113	10570	10683	21574	21574		130			-0.07966849570470913
PYNAPTVKF	9	Unmodified	_PYNAPTVKF_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;chr20:45813290-45813437|509|10.48|0.62|4.07|+|ENST00000372568|UBE2C,UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7472534179688	2	518.776742	1035.53893	0.22255	0.00011545	-0.30143	-0.00015637	-0.078881	-4.0922E-05	518.7764505810874	49.362	0.42104	49.362	49.169	49.59	0					25	14	2	0	0	0	0.17305	1	10133	10133		31.268	16.687	1	117750			15997	165	10571	10684	21575	21575					0.022583579315551106
PYNAPTVKF	9	Unmodified	_PYNAPTVKF_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;chr20:45813290-45813437|509|10.48|0.62|4.07|+|ENST00000372568|UBE2C,UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7471313476562	2	518.776742	1035.53893	0.12623	6.5483E-05	-0.03208	-1.6642E-05	0.094146	4.8841E-05	518.7766896656034	49.259	0.38284	49.336	49.185	49.568	0.076607					24	13	2	0	0	0	0.15837	1	9946	9946		34.932	14.478	1	89374			15998	165	10571	10684	21576	21576					0.022583579315551106
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.2590942382812	2	629.258579	1256.50261	0.39281	0.00024718	0.028124	1.7697E-05	0.42093	0.00026487	629.2587373145237	83.548	1.0903	83.548	83.228	84.319	0					150	41	5	0	0	0	1.1935E-05	6	20540	20489;20540;20581;20629;20693;20733		147.06	114.75	1	12262000			15999	1956;5238	10572	10685	21577;21578;21579;21580;21581;21582	21578					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.2592163085938	2	629.258579	1256.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.331	1	84.331	83.831	84.831	0								0	0	0	0.16196	1	20780	20780		23.79	9.8837	1				16000	1956;5238	10572	10685	21583	21583					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.25732421875	2	629.258579	1256.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.545	1	84.545	84.045	85.045	0								0	0	0	0.16903	1	20844	20844		22.736	8.8302	1				16001	1956;5238	10572	10685	21584	21584					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.25927734375	2	629.258579	1256.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.837	1	84.837	84.337	85.337	0								0	0	0	0.18462	1	20935	20935		20.415	6.5085	1				16002	1956;5238	10572	10685	21585	21585					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.259033203125	2	629.258579	1256.50261	0.29003	0.0001825	0.13319	8.3812E-05	0.42322	0.00026631	629.2587917887488	83.521	1.0827	83.543	83.251	84.334	0.021751					164	39	6	0	0	0	0.00034446	7	20375	20328;20375;20417;20418;20462;20514;20564		134.3	101.99	1	12389000			16003	1956;5238	10572	10685	21586;21587;21588;21589;21590;21591;21592	21587					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.2584228515625	2	629.258579	1256.50261	0.44916	0.00028264	2.3109	0.0014542	2.7601	0.0017368	629.7613799747137	84.328	0.036156	84.35	84.334	84.37	0.021744					5	3	2	0	0	0	0.13341	1	20616	20616		26.268	12.362	1	331550			16004	1956;5238	10572	10685	21593	21593					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.26025390625	2	629.258579	1256.50261	0.5834	0.00036711	0.2819	0.00017739	0.8653	0.0005445	629.7602868021855	84.627	1.1452	84.65	84.547	85.693	0.023132					66	53	2	0	0	0	0.18398	1	20755	20755		20.415	6.5085	1	315860			16005	1956;5238	10572	10685	21594	21594					-0.11538563755811992
PYNPILGETF	10	Unmodified	_PYNPILGETF_					0	0	0		ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7923583984375	2	575.792589	1149.57063	0.45279	0.00026071	-1.24	-0.00071399	-0.78723	-0.00045328	575.7922024398792	78.1	1.2039	78.13	77.583	78.787	0.030159					84	41	3	0	0	0	0.28859	1	18793	18793		23.79	0	1	338100			16006	477;1054	10573	10686	21595	21595					0.0018230589482755022
PYNPLWAQL	9	Unmodified	_PYNPLWAQL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2902221679688	2	551.290017	1100.56548	0.9042	0.00049848	-0.75921	-0.00041854	0.14499	7.9934E-05	551.2896411119928	81.235	1.0456	81.235	80.99	82.036	0					92	35	4	0	0	0	0.0064512	3	19837	19837;19891;19959		78.149	47.925	1	1297600			16007	5582	10574	10687	21596;21597;21598	21596					0.019220468228922982
PYNPLWAQL	9	Unmodified	_PYNPLWAQL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.290283203125	2	551.290017	1100.56548	0.66595	0.00036713	-0.57311	-0.00031595	0.092843	5.1183E-05	551.2897056231794	81.231	0.91641	81.253	81.022	81.938	0.021866					85	32	4	0	0	0	0.0064512	4	19658	19658;19703;19791;19837		78.149	39.998	1	1177500			16008	5582	10574	10687	21599;21600;21601;21602	21599					0.019220468228922982
PYNQQHLYF	9	Unmodified	_PYNQQHLYF_					0	0	0		ENST00000414624.6_1_11:61645294-61658904:-|nuORF;ENSG00000221968|ENST00000278829|FADS3	ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENST00000414624.6_1_11:61645294-61658904:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.2888793945312	2	605.288005	1208.56146	0.46516	0.00028156	1.1473	0.00069443	1.6124	0.00097598	605.2888466554447	49.786	0.55871	49.786	49.621	50.18	0					40	19	3	0	0	0	0.065576	1	10243	10243		44.407	30.501	1	117950			16009	5597	10575	10688	21603	21603					-0.03448042670834184
PYNQQHLYF	9	Unmodified	_PYNQQHLYF_					0	0	0		ENST00000414624.6_1_11:61645294-61658904:-|nuORF;ENSG00000221968|ENST00000278829|FADS3	ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENST00000414624.6_1_11:61645294-61658904:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.2899169921875	2	605.288005	1208.56146	0.55312	0.0003348	0.51431	0.00031131	1.0674	0.0006461	605.2884143697855	49.677	0.41814	49.751	49.622	50.041	0.073956					31	14	3	0	0	0	0.048027	2	10083	10083;10095		57.471	43.565	1	165560			16010	5597	10575	10688	21604;21605	21604					-0.03448042670834184
PYNSQYLNP	9	Unmodified	_PYNSQYLNP_					0	0	0		ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7872924804688	2	548.258914	1094.50327	0.35389	0.00019402	0.12675	6.9495E-05	0.48065	0.00026352	548.7601805719396	52.39	0.15376	52.457	52.339	52.493	0.067173					8	6	2	0	0	0	0.25051	1	10877	10877		7.9102	0.62092	1	50283			16011	4333	10576	10689	21606	21606					-0.04019724316094653
PYPCSDWSSI	10	Unmodified	_PYPCSDWSSI_					0	0	0			REV__ENST00000601438.2_1_19:47725000-47725201:-|nuORF	REV__ENST00000601438.2_1_19:47725000-47725201:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7443237304688	2	577.744782	1153.47501	-0.084485	-4.8811E-05	-0.18617	-0.00010756	-0.27066	-0.00015637	577.7445341481356	42.878	0.49237	42.968	42.624	43.116	0.089764					32	18	2	0	0	0	0.45627	1	8049	8049		3.5965	0	1	53331	+		16012	11463	10577	10690	21607	21607					-0.09558790287701413
PYPDVTDII	9	Unmodified	_PYPDVTDII_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2	REV__ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7659301757812	2	516.76604	1031.51753	0.65069	0.00033626	-0.23491	-0.0001214	0.41578	0.00021486	516.7657743105293	83.712	0.73051	83.712	83.451	84.182	0					51	24	3	0	0	0	0.25209	1	20677	20677		12.532	0	1	352890	+		16013	8648	10578	10691	21608	21608					0.003029281122053362
PYPFMSLVYF	10	Unmodified	_PYPFMSLVYF_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.87652587890625	3	421.875466	1262.60457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.278	1	53.278	52.778	53.778	0								0	0	0	0.33711	1	11310	11310		1.7423	0	1		+		16014	7980	10579	10692	21609	21609					-0.016229889377427753
PYPFTHHWQF	10	Unmodified	_PYPFTHHWQF_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.88043212890625	3	453.88049	1358.61964	0.44957	0.00020405	-0.24131	-0.00010953	0.20826	9.4526E-05	453.8802690097329	57.112	1.5672	57.112	56.65	58.217	0					136	56	4	0	0	0	0.051941	6	12496	12442;12496;12552;12599;12656;12726		57.108	44.933	1	673270			16015	3636	10580	10693	21610;21611;21612;21613;21614;21615	21611					-0.04532361025553655
PYPFTHHWQF	10	Unmodified	_PYPFTHHWQF_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.8803405761719	3	453.88049	1358.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.46	1	59.46	58.96	59.96	0								0	0	0	0.33755	1	13191	13191		3.0723	0.9883	1				16016	3636	10580	10693	21616	21616					-0.04532361025553655
PYPFTHHWQF	10	Unmodified	_PYPFTHHWQF_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.2148132324219	3	453.88049	1358.61964	0.28672	0.00013014	-0.14042	-6.3736E-05	0.1463	6.6402E-05	453.88039055653417	57.026	1.4745	57.094	56.659	58.133	0.067539					154	55	4	0	0	0	0.044868	5	12324	12275;12324;12381;12444;12533		59.052	46.878	1	821460			16017	3636	10580	10693	21617;21618;21619;21620;21621	21618					-0.04532361025553655
PYPGAWIPF	9	Unmodified	_PYPGAWIPF_					0	0	0		nc|nan|Q5SQH8|C6orf136;ENSG00000204564|ENST00000651131|C6orf136	nc|nan|Q5SQH8|C6orf136	nc|nan|Q5SQH8|C6orf136	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.281982421875	2	524.268553	1046.52255	-0.63109	-0.00033086	0.25167	0.00013194	-0.37942	-0.00019892	524.2685067309509	41.77	0.34371	41.77	41.594	41.938	0					24	12	3	0	0	0	0.18003	1	7816	7816		20.871	3.9289	1	77769			16018	5479	10581	10694	21622	21622					0.0011527676545028953
PYPGAWIPF	9	Unmodified	_PYPGAWIPF_					0	0	0		nc|nan|Q5SQH8|C6orf136;ENSG00000204564|ENST00000651131|C6orf136	nc|nan|Q5SQH8|C6orf136	nc|nan|Q5SQH8|C6orf136	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2822265625	2	524.268553	1046.52255	-0.50456	-0.00026452	0.0016488	8.6442E-07	-0.50291	-0.00026366	524.2684596759924	41.661	0.44477	41.751	41.573	42.018	0.089764					30	17	3	0	0	0	0.18003	1	7652	7652		20.871	9.2309	1	99274			16019	5479	10581	10694	21623	21623					0.0011527676545028953
PYPKPGSNAK	10	Unmodified	_PYPKPGSNAK_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2614135742188	2	529.785099	1057.55564	-0.024446	-1.2951E-05	0.44511	0.00023581	0.42066	0.00022286	529.7851907770075	32.058	0.43048	32.132	32.025	32.456	0.07378					27	20	2	0	0	0	0.31731	1	4854	4854		6.2058	0.97511	1	31205	+		16020	7935	10582	10695	21624	21624					0.029168588175025434
PYPKPGSNAK	10	Unmodified	_PYPKPGSNAK_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	529.785099	1057.55564	-0.099917	-5.2934E-05	0.42785	0.00022667	0.32794	0.00017374	529.7852922577412	32.18	0.41985	32.18	32.028	32.448	0	0.023736	-5.9797E-06	NaN	6.2058	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31944	+		16021	7935	10582	10695							0.029168588175025434
PYPQYFTQL	9	Unmodified	_PYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7877197265625	2	578.787307	1155.56006	0.074226	4.2961E-05	1.0124	0.00058596	1.0866	0.00062892	578.787699867138	72.839	0.87495	72.839	72.409	73.284	0					75	30	4	0	0	0	0.0044564	4	17291	17245;17291;17337;17377		92.653	54.679	1	1380600			16022	1354	10583	10696	21625;21626;21627;21628	21626					-0.01149676759587237
PYPQYFTQL	9	Unmodified	_PYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7877197265625	2	578.787307	1155.56006	0.24769	0.00014336	0.65091	0.00037674	0.8986	0.0005201	578.787561010289	72.788	0.75277	72.841	72.564	73.317	0.05378					72	25	4	0	0	0	0.0034419	2	17118	17071;17118		106.94	68.966	1	1237300			16023	1354	10583	10696	21629;21630	21630					-0.01149676759587237
PYPQYLAVI	9	Unmodified	_PYPQYLAVI_					0	0	0		ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2947998046875	2	532.294768	1062.57498	0.29467	0.00015685	0.47721	0.00025401	0.77187	0.00041086	532.2950728051591	78.7	0.83218	78.7	78.479	79.311	0					51	28	3	0	0	0	0.092418	2	19046	19046;19092		34.102	5.6156	1	441390			16024	660	10584	10697	21631;21632	21631					0.04619815108412695
PYPQYLAVI	9	Unmodified	_PYPQYLAVI_					0	0	0		ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2948608398438	2	532.294768	1062.57498	0.50026	0.00026629	0.048931	2.6046E-05	0.54919	0.00029233	532.2946547067003	78.684	0.53872	78.715	78.451	78.99	0.030151					37	18	3	0	0	0	0.12809	1	18886	18886		26.884	5.137	1	298460			16025	660	10584	10697	21633	21633					0.04619815108412695
PYPSERKKS	9	Unmodified	_PYPSERKKS_					0	0	0		ENST00000418348.1_1_1:229455444-229458702:+|nuORF	ENST00000418348.1_1_1:229455444-229458702:+|nuORF	ENST00000418348.1_1_1:229455444-229458702:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7620849609375	2	546.29583	1090.57711	0.34309	0.00018743	0.26777	0.00014628	0.61086	0.00033371	546.2961678389764	38.709	0.22139	38.796	38.595	38.817	0.08688					9	7	2	0	0	0	0.25504	1	6763	6763		4.756	0.42677	1	11335			16026	6439	10585	10698	21634	21634					0.03544243846226891
PYPVLFHNIF	10	Unmodified	_PYPVLFHNIF_					0	0	0		ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3394775390625	2	623.834591	1245.65463	-0.26443	-0.00016496	0.15057	9.393E-05	-0.11386	-7.1032E-05	623.8345938772065	72.916	0.5105	72.916	72.718	73.228	0					48	17	4	0	0	0	0.45239	1	17288	17288		4.3292	0.38484	1	474040			16027	6891	10586	10699	21635	21635					0.04162881782394834
PYQCEYCD	8	Unmodified	_PYQCEYCD_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2613525390625	2	510.675511	1019.33647	-0.14457	-7.3826E-05	-3.1301	-0.0015985	-3.2746	-0.0016723	510.673645051206	29.686	0.34976	29.686	29.471	29.821	0					22	17	2	0	0	0	0.3576	1	4167	4167		0.69038	0.23204	1	28585			16028	4733	10587	10700	21636	21636					-0.17242656527673716
PYQGKKRC	8	Unmodified	_PYQGKKRC_					0	0	0		ENSG00000165424|ENST00000372336|ZCCHC24;ENST00000372333.3_1_10:81146103-81203947:-|nuORF	ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2535400390625	2	490.260736	978.50692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.766	1	38.853	38.353	39.353	0.08688								0	0	0	0.38822	1	6794	6794		13.508	0	1				16029	4084	10588	10701	21637	21637					0.016806669767674975
PYRCFKRR	8	Unmodified	_PYRCFKRR_					0	0	0		ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3065185546875	2	563.308552	1124.60255	-0.038747	-2.1827E-05	-1.9434	-0.0010947	-1.9822	-0.0011166	563.3074642268115	31.249	0.31535	31.322	31.178	31.493	0.07378					24	15	3	0	0	0	0.54097	1	4535	4535		0.69038	0.16561	1	22662			16030	2642	10589	10702	21638	21638					0.0452343988768007
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.89715576171875	3	404.89737	1211.67028	0.17733	7.1801E-05	-0.068569	-2.7763E-05	0.10876	4.4038E-05	404.8971998086047	58.488	1.629	58.488	58.327	59.956	0					117	60	4	0	0	0	0.011018	7	12894	12894;12945;12995;13062;13122;13170;13230		64.692	37.603	1	1147800			16031	5692	10590	10703	21639;21640;21641;21642;21643;21644;21645	21639					0.07291168299434503
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.8975524902344	3	404.89737	1211.67028	-0.00026931	-1.0904E-07	0.061609	2.4945E-05	0.06134	2.4836E-05	404.8973072646278	58.37	1.5878	58.441	58.322	59.91	0.070477					107	60	4	0	0	0	0.0082503	6	12712	12712;12762;12820;12874;12982;13038		72.59	44.959	1	1211800			16032	5692	10590	10703	21646;21647;21648;21649;21650;21651	21646					0.07291168299434503
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7837524414062	2	606.842416	1211.67028	0.6068	0.00036823	-0.6506	-0.00039481	-0.043808	-2.6584E-05	606.8418096002441	58.378	0.43007	58.449	58.348	58.778	0.070477					25	14	2	0	0	0	0.22247	1	12734	12734		20.415	8.1739	1	153040			16033	5692	10590	10703	21652	21652					0.07291168299434503
PYRLLPGIF	9	Unmodified	_PYRLLPGIF_					0	0	0		ENST00000525137.1_2_11:71146423-71148912:-|nuORF;ENSG00000172893|ENST00000355527|DHCR7	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.8002319335938	2	538.318577	1074.6226	0.50552	0.00027213	-0.3248	-0.00017485	0.18071	9.7282E-05	538.3184152963725	74.832	0.74645	74.832	74.452	75.199	0					44	27	2	0	0	0	0.24749	1	17957	17957		9.3474	9.3474	1	177360			16034	4517	10591	10704	21653	21653					0.08827514099266409
PYRLLPGIF	9	Unmodified	_PYRLLPGIF_					0	0	0		ENST00000525137.1_2_11:71146423-71148912:-|nuORF;ENSG00000172893|ENST00000355527|DHCR7	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7999267578125	2	538.318577	1074.6226	0.58409	0.00031442	-0.0035375	-1.9043E-06	0.58055	0.00031252	538.3184980355442	74.725	0.66881	74.773	74.45	75.119	0.048546					36	23	2	0	0	0	0.24749	1	17787	17787		9.3474	9.3474	1	127600			16035	4517	10591	10704	21654	21654					0.08827514099266409
PYRTSKREL	9	Unmodified	_PYRTSKREL_					0	0	0		ENST00000476950.5_2_21:38600601-38604703:-|nuORF	ENST00000476950.5_2_21:38600601-38604703:-|nuORF	ENST00000476950.5_2_21:38600601-38604703:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.330810546875	2	575.32238	1148.63021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.64	1	71.64	71.14	72.14	0								0	0	0	0.21325	1	16905	16905		16.149	1.3108	1				16036	6719	10592	10705	21655	21655					0.061836216289066215
PYSCGECGKGF	11	Unmodified	_PYSCGECGKGF_					0	0	0		nc|ENSG00000278318|Q9UJW7-2|ZNF229;ENSG00000278318|ENST00000614049|ZNF229	nc|ENSG00000278318|Q9UJW7-2|ZNF229	nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2313842773438	2	574.230984	1146.44742	0.51555	0.00029605	0.36047	0.00020699	0.87602	0.00050304	574.2311482606	82.479	1.7141	82.479	81.836	83.55	0					93	59	2	0	0	0	0.36931	1	20251	20251		10.074	3.8681	1	682990			16037	5761	10593	10706	21656	21656					-0.11995016819560078
PYSEYFEYF	9	Unmodified	_PYSEYFEYF_					0	0	0		ENST00000491581.5_1_5:141004689-141007494:-|nuORF;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7615966796875	2	622.760955	1243.50736	0.21106	0.00013144	0.34606	0.00021551	0.55712	0.00034695	622.7609520200386	82.491	0.53299	82.491	82.259	82.792	0					38	18	3	0	0	0	0.10833	1	20219	20219		30.637	19.813	1	198520			16038	4457	10594	10707	21657	21657					-0.10465679613048451
PYSEYFEYF	9	Unmodified	_PYSEYFEYF_					0	0	0		ENST00000491581.5_1_5:141004689-141007494:-|nuORF;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.7609252929688	2	622.760955	1243.50736	0.13673	8.5149E-05	0.41453	0.00025815	0.55126	0.0003433	622.7610340316272	82.546	0.63818	82.568	82.319	82.958	0.021751					41	22	3	0	0	0	0.0569	2	20057	20057;20111		41.84	31.016	1	255790			16039	4457	10594	10707	21658;21659	21658					-0.10465679613048451
PYSLLDIMV	9	Unmodified	_PYSLLDIMV_					0	0	0		ENST00000446265.3_1:149647111-149647681:+|nuORF	ENST00000446265.3_1:149647111-149647681:+|nuORF	ENST00000446265.3_1:149647111-149647681:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2822265625	2	525.780636	1049.54672	0.47752	0.00025107	0.052104	2.7395E-05	0.52962	0.00027847	525.780619277162	80.98	0.71786	81.004	80.592	81.31	0.023605					64	24	4	0	0	0	0.1182	1	19580	19580		28.487	3.0875	1	636580			16040	6541	10595	10708	21660	21660					0.023927491368112896
PYSSSRLY	8	Unmodified	_PYSSSRLY_					0	0	0		ENST00000541676.5_2_16:84213598-84214742:-|nuORF;ENST00000341690.10_1_16:84213598-84214685:-|nuORF	ENST00000541676.5_2_16:84213598-84214742:-|nuORF	ENST00000541676.5_2_16:84213598-84214742:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2095031738281	2	486.742899	971.471246	-0.15468	-7.5291E-05	-0.25665	-0.00012492	-0.41134	-0.00020021	486.74295230911844	45.058	0.94653	45.146	44.783	45.729	0.08754					48	35	2	0	0	0	0.3576	1	8762	8762		2.3027	0	1	42311			16041	7064	10596	10709	21661	21661					-0.015630919992418058
PYSSSRLY	8	Unmodified	_PYSSSRLY_					0	0	0		ENST00000541676.5_2_16:84213598-84214742:-|nuORF;ENST00000341690.10_1_16:84213598-84214685:-|nuORF	ENST00000541676.5_2_16:84213598-84214742:-|nuORF	ENST00000541676.5_2_16:84213598-84214742:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	486.742899	971.471246	-0.40575	-0.0001975	-0.76033	-0.00037009	-1.1661	-0.00056758	486.742822397252	45.274	0.70875	45.274	44.909	45.617	0	0.064161	-0.00019246	NaN	2.3027	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61041			16042	7064	10596	10709							-0.015630919992418058
PYSVYLFSF	9	Unmodified	_PYSVYLFSF_					0	0	0		SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant;ENSG00000141526|ENST00000582743|SLC16A3	SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant	SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7789916992188	2	561.778951	1121.54335	0.47389	0.00026622	-0.44014	-0.00024726	0.033747	1.8958E-05	561.7787411704215	94.12	0.47321	94.12	93.953	94.426	0					41	24	3	0	0	0	0.24791	1	23740	23740		10.074	2.7847	1	232620			16043	3064	10597	10710	21662	21662					-0.012561776455186191
PYTDGGGSSL	10	Unmodified	_PYTDGGGSSL_					0	0	0			REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2138366699219	2	477.214172	952.413791	-0.09219	-4.3995E-05	-2.137	-0.0010198	-2.2292	-0.0010638	477.21314932924366	51.129	0.40429	51.129	50.981	51.386	0					22	13	2	0	0	0	0.45794	1	10719	10719		3.2813	0.70383	1	59301	+		16044	11214	10598	10711	21663	21663					-0.06431978995442478
PYTDGGGSSL	10	Unmodified	_PYTDGGGSSL_					0	0	0			REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	477.214172	952.413791	9.6634E-05	4.6115E-08	-2.6036	-0.0012425	-2.6035	-0.0012424	477.2128690954129	51.073	0.45435	51.143	50.996	51.451	0.069874	0.0071052	-0.00018531	NaN	3.2813	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56871	+		16045	11214	10598	10711							-0.06431978995442478
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.770751953125	2	550.268947	1098.52334	-0.44629	-0.00024558	0.14811	8.1502E-05	-0.29818	-0.00016408	550.2688304067484	42.089	0.57887	42.089	41.91	42.489	0					44	19	3	0	0	0	0.0097877	2	7907	7907;7962		67.838	13.136	1	208560			16046	4896	10599	10712	21664;21665	21664					-0.021979733761327225
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2685546875	2	550.268947	1098.52334	-0.20983	-0.00011546	0.37524	0.00020648	0.16541	9.102E-05	550.2688364939935	42.003	0.47678	42.093	41.893	42.37	0.089767					43	18	3	0	0	0	0.034936	2	7796	7750;7796		47.594	16.958	1	197230			16047	4896	10599	10712	21666;21667	21667					-0.021979733761327225
PYVADRQGF	9	Unmodified	_PYVADRQGF_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7797241210938	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.54	1	50.54	50.04	51.04	0								0	0	0	0.2428	1	10477	10477		10.824	0	1				16048	3350	10600	10713	21668	21668					-0.015000007336311683
PYVNNVPHL	9	Unmodified	_PYVNNVPHL_					0	0	0		nc|ENSG00000166986|P56192-2|MARS1;ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	nc|ENSG00000166986|P56192-2|MARS1	nc|ENSG00000166986|P56192-2|MARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7799072265625	2	526.779816	1051.54508	0.16779	8.8387E-05	-0.20252	-0.00010669	-0.034735	-1.8298E-05	526.7795414987925	50.33	1.0937	50.33	49.968	51.062	0					78	38	3	0	0	0	0.026569	1	10425	10425		53.576	13.626	1	369470			16049	4193	10601	10714	21669	21669					0.021368761630810695
PYVNNVPHL	9	Unmodified	_PYVNNVPHL_					0	0	0		nc|ENSG00000166986|P56192-2|MARS1;ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	nc|ENSG00000166986|P56192-2|MARS1	nc|ENSG00000166986|P56192-2|MARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7799072265625	2	526.779816	1051.54508	0.20699	0.00010904	-0.17994	-9.4788E-05	0.027055	1.4252E-05	526.7795362030366	50.278	0.8683	50.351	49.927	50.795	0.07312					64	30	3	0	0	0	0.0076571	1	10273	10273		74.423	32.583	1	271030			16050	4193	10601	10714	21670	21670					0.021368761630810695
PYWQVTEV	8	Unmodified	_PYWQVTEV_					0	0	0			REV__ENST00000484330.5_1_5:60198317-60214439:-|nuORF	REV__ENST00000484330.5_1_5:60198317-60214439:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.25286865234375	2	511.2531	1020.49165	-0.39182	-0.00020032	0.42023	0.00021484	0.028406	1.4522E-05	511.25329055813046	16.269	0.21252	16.269	16.194	16.407	0					35	27	2	0	0	0	0.54081	1	695	695		0.79363	0	1	19162	+		16051	12114	10602	10715	21671	21671					-0.01777921339430577
PYYPSPGVLF	10	Unmodified	_PYYPSPGVLF_					0	0	0		TMEM181-HP1BP3|1|fusion;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	TMEM181-HP1BP3|1|fusion	TMEM181-HP1BP3|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2925415039062	2	570.292225	1138.5699	0.73977	0.00042188	0.45929	0.00026193	1.1991	0.00068382	570.2926189298068	81.65	0.6025	81.65	81.434	82.036	0					54	20	4	0	0	0	0.026015	1	19951	19951		64.236	48.389	1	203680			16052	13432	10603	10716	21672	21672					0.006155112458145595
PYYPSPGVLF	10	Unmodified	_PYYPSPGVLF_					0	0	0		TMEM181-HP1BP3|1|fusion;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	TMEM181-HP1BP3|1|fusion	TMEM181-HP1BP3|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2933349609375	2	570.292225	1138.5699	0.40494	0.00023093	0.84049	0.00047933	1.2454	0.00071026	570.2928101264034	81.593	0.71019	81.615	81.392	82.102	0.021866					62	25	4	0	0	0	0.026015	2	19781	19781;19835		64.236	42.49	1	241360			16053	13432	10603	10716	21673;21674	21673					0.006155112458145595
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3261108398438	2	572.326068	1142.63758	0.10424	5.9658E-05	0.10638	6.0881E-05	0.21061	0.00012054	572.3260669209855	71.826	1.8378	71.826	71.584	73.422	0					197	64	5	0	0	0	0.00061878	4	16987	16987;17294;17349;17397		129.77	81.426	1	7006400			16054	4032	10604	10717	21675;21676;21677;21678	21675					0.07196961176623518
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3260498046875	2	572.326068	1142.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.579	1	73.579	73.079	74.079	0								0	0	0	0.14533	1	17498	17498		26.268	11.43	1				16055	4032	10604	10717	21679	21679					0.07196961176623518
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2565307617188	2	572.326068	1142.63758	0.39399	0.00022549	-0.40861	-0.00023386	-0.014619	-8.367E-06	572.3256882308519	74.79	0.67866	74.79	74.31	74.988	0					41	24	2	0	0	0	0.24533	1	17890	17890		12.241	4.3305	1	68317			16056	4032	10604	10717	21680	21680					0.07196961176623518
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.326171875	2	572.326068	1142.63758	0.14815	8.4789E-05	0.12457	7.1297E-05	0.27272	0.00015609	572.3260854237819	71.775	1.7758	71.831	71.566	73.342	0.055931					192	62	5	0	0	0	0.00061878	1	16809	16809		129.77	81.426	1	9021100			16057	4032	10604	10717	21681	21681					0.07196961176623518
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.326068	1142.63758	0.3952	0.00022618	-0.76553	-0.00043813	-0.37033	-0.00021195	572.8272253111318	74.541	0.39182	74.59	74.396	74.788	0.048546	-0.10014	-0.00024134	NaN	12.241	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67290			16058	4032	10604	10717							0.07196961176623518
QAADHQPIL	9	Unmodified	_QAADHQPIL_					0	0	0		ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7615661621094	2	496.761623	991.508694	0.23257	0.00011553	0.0096141	4.7759E-06	0.24218	0.00012031	496.76153238396626	35.552	0.74241	35.552	35.334	36.077	0					60	27	3	0	0	0	0.14091	1	5988	5988		25.399	0.72543	1	194580			16059	5775	10605	10718	21682	21682					0.012599992663922421
QAAFEQSQET	10	Unmodified	_QAAFEQSQET_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.754638671875	2	569.754192	1137.49383	-0.031619	-1.8015E-05	-0.058236	-3.318E-05	-0.089856	-5.1196E-05	569.7541930429601	23.7	0.30784	23.8	23.667	23.975	0.099739					49	28	2	0	0	0	0.46899	1	2341	2341		1.1933	0.50296	1	32489	+		16060	8023	10606	10719	21683	21683					-0.06941537392276587
QAAFEQSQET	10	Unmodified	_QAAFEQSQET_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	569.754192	1137.49383	-0.031619	-1.8015E-05	-0.058236	-3.318E-05	-0.089856	-5.1196E-05	569.7541930429601	23.7	0.30784	23.8	23.667	23.975	0.099739	-0.038927	-8.8089E-05	NaN	1.1933	49	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32489	+		16061	8023	10606	10719							-0.06941537392276587
QAAPDLHVL	9	Unmodified	_QAAPDLHVL_					0	0	0		ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2666015625	2	482.266542	962.51853	-0.099542	-4.8006E-05	0.22804	0.00010998	0.1285	6.1971E-05	482.26662279656773	51.441	1.2154	51.441	51.152	52.368	0					90	41	4	0	0	0	0.0043613	4	10750	10750;10795;10840;10862		96.285	52.426	1	1775600			16062	3638	10607	10720	21684;21685;21686;21687	21684					0.03577187271753246
QAAPDLHVL	9	Unmodified	_QAAPDLHVL_					0	0	0		ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2666015625	2	482.266542	962.51853	0.0084955	4.0971E-06	0.15544	7.4966E-05	0.16394	7.9063E-05	482.2665825547004	51.384	0.73861	51.454	51.154	51.892	0.069874					83	27	4	0	0	0	0.0045547	3	10604	10604;10654;10707		88.904	48.946	1	1433300			16063	3638	10607	10720	21688;21689;21690	21688					0.03577187271753246
QAARDYTL	8	Unmodified	_QAARDYTL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.2402648925781	2	469.240524	936.466495	-0.21131	-9.9156E-05	-0.16431	-7.7099E-05	-0.37562	-0.00017625	469.24038959117786	32.885	1.2248	32.885	32.658	33.883	0					121	47	4	0	0	0	0.02249	2	5150	5150;5196		88.954	27.596	1	703790			16064	1989	10608	10721	21691;21692	21691					-0.004279761419979877
QAARDYTL	8	Unmodified	_QAARDYTL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.2402648925781	2	469.240524	936.466495	-0.28503	-0.00013375	-0.11551	-5.4202E-05	-0.40054	-0.00018795	469.24042309957	32.836	1.2484	32.91	32.674	33.923	0.073975					115	53	4	0	0	0	0.02832	2	5012	5012;5057		92.653	31.296	1	668820			16065	1989	10608	10721	21693;21694	21693					-0.004279761419979877
QAARSFKR	8	Unmodified	_QAARSFKR_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2666931152344	2	482.277775	962.540997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.29	1	51.29	50.79	51.79	0								0	0	0	0.38822	1	10705	10705		9.3474	0	1				16066	4298	10609	10722	21695	21695					0.058228314600341946
QAATEHLL	8	Unmodified	_QAATEHLL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2037658691406	2	441.737617	881.460681	0.31436	0.00013886	-0.20439	-9.0285E-05	0.10997	4.8578E-05	441.73745428186334	36.239	0.72915	36.239	36.022	36.751	0					46	27	3	0	0	0	0.35759	1	6140	6140		13.508	4.1604	1	120540			16067	5715	10610	10723	21696	21696					0.015209253463240202
QACFSKLVMVT	11	Unmodified	_QACFSKLVMVT_					0	0	0		ENST00000523024.1_2_8:10356260-10405046:-|nuORF	ENST00000523024.1_2_8:10356260-10405046:-|nuORF	ENST00000523024.1_2_8:10356260-10405046:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.213134765625	3	409.547243	1225.6199	0.39018	0.0001598	-0.15372	-6.2956E-05	0.23646	9.6842E-05	409.5472172933929	36.39	0.97333	36.39	35.944	36.917	0					54	36	2	0	0	0	0.31062	1	6243	6243		1.0136	0.23704	1	134090			16068	6972	10611	10724	21697	21697					0.016115545877710247
QADAPNPSL	9	Unmodified	_QADAPNPSL_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.72406005859375	2	456.724707	911.43486	-0.48723	-0.00022253	-0.77432	-0.00035365	-1.2616	-0.00057618	456.7242571608054	41.767	0.7292	41.767	41.55	42.279	0					56	26	3	0	0	0	0.032194	2	7815	7815;7860		49.554	21.067	1	473370			16069	1446	10612	10725	21698;21699	21698					-0.024399688959533705
QADAPNPSL	9	Unmodified	_QADAPNPSL_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7240905761719	2	456.724707	911.43486	-0.4959	-0.00022649	-0.52374	-0.0002392	-1.0196	-0.00046569	456.72439148822076	41.686	0.74029	41.776	41.332	42.072	0.089767					62	29	4	0	0	0	0.0093779	2	7651	7651;7699		69.105	20.759	1	475600			16070	1446	10612	10725	21700;21701	21700					-0.024399688959533705
QADARQVVL	9	Unmodified	_QADARQVVL_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.28271484375	2	500.282723	998.550893	0.34947	0.00017483	-0.55958	-0.00027995	-0.21012	-0.00010512	500.2823497111047	38.2	0.88351	38.2	37.96	38.844	0					66	31	3	0	0	0	0.089428	1	6735	6735		47.749	11.622	1	241260			16071	3963	10613	10726	21702	21702					0.051559746747557256
QADEDYEEEDE	11	Unmodified	_QADEDYEEEDE_					0	0	0			REV__ENST00000480858.2_1_15:69075240-69076772:-|nuORF	REV__ENST00000480858.2_1_15:69075240-69076772:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.2241516113281	3	457.828403	1370.46338	-0.031946	-1.4626E-05	-1.3466	-0.0006165	-1.3785	-0.00063112	457.8278419901812	28.415	0.5234	28.415	28.194	28.718	0					40	25	2	0	0	0	0.31097	1	3779	3779		1.2148	0.80657	1	41801	+		16072	9367	10614	10727	21703	21703					-0.20703405358631244
QADEEFQIL	9	Unmodified	_QADEEFQIL_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000102158|Q9H0U3-2|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.76416015625	2	546.764029	1091.5135	0.19743	0.00010795	0.066335	3.6269E-05	0.26376	0.00014422	546.7640747617318	71.836	0.84232	71.836	71.386	72.228	0					63	29	3	0	0	0	0.023873	2	16948	16948;17001		55.503	55.503	1	1135600			16073	1298	10615	10728	21704;21705	21704					-0.02859161381525155
QADEEFQIL	9	Unmodified	_QADEEFQIL_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000102158|Q9H0U3-2|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7643432617188	2	546.764029	1091.5135	0.2049	0.00011203	0.045646	2.4958E-05	0.25055	0.00013699	546.7640789894798	71.773	0.8317	71.829	71.376	72.207	0.055939					70	29	4	0	0	0	0.12752	1	16771	16771		39.95	3.9055	1	1281700			16074	1298	10615	10728	21706	21706					-0.02859161381525155
QADFLDKQM	9	Oxidation (M)	_QADFLDKQM(Oxidation (M))_		QADFLDKQM(1)		QADFLDKQM(110)	0	0	1		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2583618164062	2	556.258056	1110.50156	0.41556	0.00023116	0.39944	0.00022219	0.815	0.00045335	556.2583603220116	37.084	1.7881	37.084	36.751	38.539	0					120	64	4	0	0	0	0.0034159	1	6418	6418		107.1	61.079	1	285740			16075	923	10616	10729	21707	21707		52			-0.0492710139637893
QADFLDKQM	9	Oxidation (M)	_QADFLDKQM(Oxidation (M))_		QADFLDKQM(1)		QADFLDKQM(44)	0	0	1		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2584228515625	2	556.258056	1110.50156	0.20563	0.00011438	0.4771	0.00026539	0.68273	0.00037977	556.2583172025253	39.315	2.1106	39.315	38.625	40.736	0					131	77	3	0	0	0	0.048027	2	7113	7067;7113		43.772	16.889	1	167990			16076	923	10616	10729	21708;21709	21709		52			-0.0492710139637893
QADFLDKQM	9	Oxidation (M)	_QADFLDKQM(Oxidation (M))_		QADFLDKQM(1)		QADFLDKQM(91)	0	0	1		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2579956054688	2	556.258056	1110.50156	0.5168	0.00028747	0.0058123	3.2331E-06	0.52261	0.00029071	556.258033990467	36.994	0.82829	37.076	36.739	37.567	0.081715					77	31	4	0	0	0	0.0044975	1	6276	6276		91.085	56.683	1	233990			16077	923	10616	10729	21710	21710		52			-0.0492710139637893
QADFLDKQM	9	Oxidation (M)	_QADFLDKQM(Oxidation (M))_		QADFLDKQM(1)		QADFLDKQM(42)	0	0	1		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2581787109375	2	556.258056	1110.50156	0.40298	0.00022416	0.3871	0.00021533	0.79008	0.00043949	556.258313911912	39.237	2.0027	39.326	38.653	40.656	0.088562					147	78	3	0	0	0	0.056368	1	6940	6940		41.956	16.556	1	125410			16078	923	10616	10729	21711	21711		52			-0.0492710139637893
QADIEVRAL	9	Unmodified	_QADIEVRAL_					0	0	0		nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3	nc|ENSG00000130299|Q969Y2-3|GTPBP3	nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.78253173828125	2	507.782556	1013.55056	0.33866	0.00017197	-0.46882	-0.00023806	-0.13016	-6.6095E-05	507.7822585698023	47.188	0.59022	47.188	46.967	47.557	0					40	19	3	0	0	0	0.0077293	2	9461	9461;9514		74.2	30.341	1	272640			16079	2462	10617	10730	21712;21713	21712					0.04432554954905754
QADIEVRAL	9	Unmodified	_QADIEVRAL_					0	0	0		nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3	nc|ENSG00000130299|Q969Y2-3|GTPBP3	nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7821960449219	2	507.782556	1013.55056	0.32134	0.00016317	-0.13209	-6.7071E-05	0.18925	9.6098E-05	507.78244215263453	47.1	0.54364	47.183	46.964	47.507	0.083092					40	19	3	0	0	0	0.0047429	2	9296	9296;9348		83.429	16.972	1	210340			16080	2462	10617	10730	21714;21715	21714					0.04432554954905754
QADPFLGLAM	10	Oxidation (M)	_QADPFLGLAM(Oxidation (M))_		QADPFLGLAM(1)		QADPFLGLAM(60)	0	0	1		ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.765625	2	539.765517	1077.51648	0.44322	0.00023923	1.4436	0.00077921	1.8868	0.0010184	539.7667297520171	73.59	0.49226	73.642	73.338	73.831	0.052574					42	19	3	0	0	0	0.041153	1	17350	17350		60.074	24.03	1	212180			16081	4813	10618	10731	21716	21716		281			-0.019176095283683026
QADPREPQF	9	Unmodified	_QADPREPQF_					0	0	0		ENST00000532696.1_1_11:9225120-9228222:-|nuORF;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	ENST00000532696.1_1_11:9225120-9228222:-|nuORF	ENST00000532696.1_1_11:9225120-9228222:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2616577148438	2	544.261988	1086.50942	0.31195	0.00016978	-0.12011	-6.5374E-05	0.19184	0.00010441	544.2616845845516	37.668	0.65875	37.668	37.417	38.076	0					56	22	4	0	0	0	0.023873	2	6570	6570;6614		55.503	26.421	1	198670			16082	4955	10619	10732	21717;21718	21717					-0.03037206084582067
QADPREPQF	9	Unmodified	_QADPREPQF_					0	0	0		ENST00000532696.1_1_11:9225120-9228222:-|nuORF;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	ENST00000532696.1_1_11:9225120-9228222:-|nuORF	ENST00000532696.1_1_11:9225120-9228222:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.261962890625	2	544.261988	1086.50942	0.33456	0.00018209	3.4473	0.0018762	3.7819	0.0020583	544.2617172940883	37.639	0.76977	37.723	37.374	38.144	0.084476					96	26	5	0	0	0	0.16392	1	6417	6417		22.736	9.2284	1	156700			16083	4955	10619	10732	21719	21719					-0.03037206084582067
QADPTKLEL	9	Unmodified	_QADPTKLEL_					0	0	0		ENSG00000164609|ENST00000297151|SLU7;ENST00000523219.1_1_5:159833399-159834623:-|nuORF;ENST00000520841.1_1_5:159833399-159835410:-|nuORF	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7772521972656	2	507.776939	1013.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.866	1	48.866	48.366	49.366	0								0	0	0	0.013252	1	9968	9968		66.457	22.598	1				16084	4020	10620	10733	21720	21720					0.033097328607595955
QADPTKLEL	9	Unmodified	_QADPTKLEL_					0	0	0		ENSG00000164609|ENST00000297151|SLU7;ENST00000523219.1_1_5:159833399-159834623:-|nuORF;ENST00000520841.1_1_5:159833399-159835410:-|nuORF	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.77685546875	2	507.776939	1013.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.023	1	49.023	48.523	49.523	0								0	0	0	3.2231E-05	1	10016	10016		99.755	43.578	1				16085	4020	10620	10733	21721	21721					0.033097328607595955
QADPTKLEL	9	Unmodified	_QADPTKLEL_					0	0	0		ENSG00000164609|ENST00000297151|SLU7;ENST00000523219.1_1_5:159833399-159834623:-|nuORF;ENST00000520841.1_1_5:159833399-159835410:-|nuORF	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7770080566406	2	507.776939	1013.53933	0.054616	2.7733E-05	-0.18825	-9.5591E-05	-0.13364	-6.7858E-05	507.7767049545793	48.898	0.8469	48.975	48.75	49.597	0.076607					53	30	3	0	0	0	0.0034159	2	9857	9809;9857		107.1	50.923	1	366260			16086	4020	10620	10733	21722;21723	21723					0.033097328607595955
QADQVDVKL	9	Unmodified	_QADQVDVKL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.27410888671875	2	508.274564	1014.53457	-0.22106	-0.00011236	-0.076297	-3.878E-05	-0.29736	-0.00015114	508.27448572546956	43.222	0.551	43.222	42.916	43.467	0					39	18	3	0	0	0	0.029591	1	8244	8244		51.415	3.8208	1	250640			16087	5032	10621	10734	21724	21724					0.027888487179893673
QADQVDVKL	9	Unmodified	_QADQVDVKL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2743835449219	2	508.274564	1014.53457	-0.11033	-5.6079E-05	-0.25598	-0.00013011	-0.36631	-0.00018619	508.2745705918669	43.13	0.60099	43.219	42.955	43.556	0.089767					40	21	3	0	0	0	0.064247	1	8132	8132		40.239	3.733	1	205020			16088	5032	10621	10734	21725	21725					0.027888487179893673
QADRAFQQL	9	Unmodified	_QADRAFQQL_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.77783203125	2	538.777805	1075.54106	-0.024576	-1.3241E-05	0.16085	8.6661E-05	0.13627	7.342E-05	538.7779112090078	39.849	0.54755	39.849	39.633	40.18	0					34	18	2	0	0	0	0.01943	1	7268	7268		58.679	6.4105	1	165970			16089	5194	10622	10735	21726	21726					0.006307866693759934
QADRAFQQL	9	Unmodified	_QADRAFQQL_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7779541015625	2	538.777805	1075.54106	0.22347	0.0001204	-0.45011	-0.00024251	-0.22664	-0.00012211	538.7776616239133	39.76	0.60395	39.849	39.533	40.137	0.088562					49	22	3	0	0	0	0.03472	2	7077	7077;7126		47.749	8.1218	1	143450			16090	5194	10622	10735	21727;21728	21727					0.006307866693759934
QADSLERSL	9	Unmodified	_QADSLERSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.76171875	2	509.76182	1017.50909	0.30751	0.00015676	-0.32339	-0.00016485	-0.015872	-8.0908E-06	509.7616210628289	38.247	0.98939	38.247	37.96	38.95	0					93	35	4	0	0	0	0.00090591	4	6786	6736;6786;6835;6890		125.04	28.671	1	758080			16091	2854	10623	10736	21729;21730;21731;21732	21730					0.0010337419557799876
QADSLERSL	9	Unmodified	_QADSLERSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.76177978515625	2	509.76182	1017.50909	0.32994	0.00016819	-0.35729	-0.00018213	-0.027342	-1.3938E-05	509.76162263571075	38.151	0.8943	38.238	38.017	38.911	0.08688					86	33	4	0	0	0	1.9628E-05	3	6623	6579;6623;6667		139.78	32.842	1	643700			16092	2854	10623	10736	21733;21734;21735	21734					0.0010337419557799876
QADSQSPKL	9	Unmodified	_QADSQSPKL_					0	0	0		ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF;ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2	ENST00000532206.1_1_16:50731151-50744498:+|nuORF	ENST00000532206.1_1_16:50731151-50744498:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2510070800781	2	487.251089	972.487624	-0.36785	-0.00017924	0.13083	6.3745E-05	-0.23703	-0.00011549	487.251168180498	25.658	0.38576	25.658	25.473	25.859	0					53	29	2	0	0	0	0.32375	1	3049	3049		3.5965	1.5367	1	47534			16093	4204	10624	10737	21736	21736					0.0002798916684696451
QADSQSPKL	9	Unmodified	_QADSQSPKL_					0	0	0		ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF;ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2	ENST00000532206.1_1_16:50731151-50744498:+|nuORF	ENST00000532206.1_1_16:50731151-50744498:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2508239746094	2	487.251089	972.487624	-0.23157	-0.00011283	-0.020574	-1.0025E-05	-0.25214	-0.00012286	487.2510295339257	25.518	0.40487	25.61	25.407	25.812	0.091507					49	33	2	0	0	0	0.25746	1	2843	2843		3.2813	0.97858	1	40433			16094	4204	10624	10737	21737	21737					0.0002798916684696451
QAEEGSARL	9	Unmodified	_QAEEGSARL_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7407531738281	2	480.740888	959.467223	-0.27839	-0.00013383	0.25043	0.00012039	-0.02796	-1.3442E-05	480.7409155290212	23.993	0.4547	24.093	23.912	24.367	0.099737					71	44	2	0	0	0	0.26104	1	2450	2450		11.495	4.7715	1	53449			16095	3336	10625	10738	21738	21738					-0.01413181492955573
QAEELQSR	8	Unmodified	_QAEELQSR_					0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7406311035156	2	480.740888	959.467223	-0.4884	-0.0002348	0.26543	0.0001276	-0.22297	-0.00010719	480.7409677190087	24.166	0.48815	24.166	24.006	24.494	0					81	45	2	0	0	0	0.3576	1	2623	2623		3.5965	0	1	68161	+		16096	10395	10626	10739	21739	21739					-0.014131814929442044
QAEEREHTL	9	Unmodified	_QAEEREHTL_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.770263671875	2	556.770177	1111.5258	-0.18662	-0.0001039	0.13371	7.4444E-05	-0.052911	-2.9459E-05	556.7701810970314	19.175	0.61939	19.175	19.025	19.644	0					150	71	4	0	0	0	0.26104	1	1295	1295		11.495	6.264	1	92192			16097	1160	10627	10740	21740	21740					-0.025501249184799235
QAEEREHTL	9	Unmodified	_QAEEREHTL_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7701416015625	2	556.770177	1111.5258	0.38125	0.00021227	-0.46786	-0.00026049	-0.086604	-4.8219E-05	556.7698778656683	19.116	0.44426	19.205	19.036	19.48	0.089705					113	49	3	0	0	0	0.28472	2	1193	1193;1229		8.7454	4.801	1	99287			16098	1160	10627	10740	21741;21742	21741					-0.025501249184799235
QAEGRNPTL	9	Unmodified	_QAEGRNPTL_					0	0	0		NCDN|p.E37K|1|0.21|ENSG00000020129|chr1:35559182-35559182|G/A|missense_variant;nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	NCDN|p.E37K|1|0.21|ENSG00000020129|chr1:35559182-35559182|G/A|missense_variant	NCDN|p.E37K|1|0.21|ENSG00000020129|chr1:35559182-35559182|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2561950683594	2	493.256705	984.498858	-0.11029	-5.4401E-05	-0.34579	-0.00017056	-0.45608	-0.00022496	493.2564448077818	25.66	0.36637	25.66	25.514	25.881	0					58	27	3	0	0	0	0.32614	1	3036	3036		3.2813	1.4371	1	41609			16099	473	10628	10741	21743	21743					0.0059881126099980975
QAEGRNPTL	9	Unmodified	_QAEGRNPTL_					0	0	0		NCDN|p.E37K|1|0.21|ENSG00000020129|chr1:35559182-35559182|G/A|missense_variant;nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	NCDN|p.E37K|1|0.21|ENSG00000020129|chr1:35559182-35559182|G/A|missense_variant	NCDN|p.E37K|1|0.21|ENSG00000020129|chr1:35559182-35559182|G/A|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.256705	984.498858	-0.0064345	-3.1739E-06	-0.15468	-7.6297E-05	-0.16111	-7.947E-05	493.25660090073853	25.529	0.37951	25.62	25.444	25.824	0.091507	-0.019644	0.00011795	NaN	3.2813	45	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32642			16100	473	10628	10741							0.0059881126099980975
QAEGSSHIL	9	Unmodified	_QAEGSSHIL_					0	0	0		ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1	ENSG00000142675|ENST00000361530|CNKSR1	ENSG00000142675|ENST00000361530|CNKSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.23785400390625	2	471.237981	940.461409	-0.31432	-0.00014812	0.06052	2.8519E-05	-0.2538	-0.0001196	471.23794400931286	29.822	0.72575	29.822	29.636	30.362	0					75	35	3	0	0	0	0.29576	1	4257	4257		7.2892	4.7117	1	165680			16101	3117	10629	10742	21744	21744					-0.01120280004624874
QAEGSSHIL	9	Unmodified	_QAEGSSHIL_					0	0	0		ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1	ENSG00000142675|ENST00000361530|CNKSR1	ENSG00000142675|ENST00000361530|CNKSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2376708984375	2	471.237981	940.461409	-0.36353	-0.00017131	0.024017	1.1318E-05	-0.33951	-0.00015999	471.2379288320392	29.708	0.61833	29.783	29.61	30.228	0.075403					90	37	3	0	0	0	0.23216	3	4107	4068;4107;4145		14.838	2.3067	1	129160			16102	3117	10629	10742	21745;21746;21747	21746					-0.01120280004624874
QAENVDVKI	9	Unmodified	_QAENVDVKI_					0	0	0		PCDHGA10|p.L142V|1|0.28|ENSG00000253846|chr5:141413599-141413599|C/G|missense_variant	PCDHGA10|p.L142V|1|0.28|ENSG00000253846|chr5:141413599-141413599|C/G|missense_variant	PCDHGA10|p.L142V|1|0.28|ENSG00000253846|chr5:141413599-141413599|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2745056152344	2	508.274564	1014.53457	-0.22106	-0.00011236	-0.076297	-3.878E-05	-0.29736	-0.00015114	508.27448572546956	43.222	0.551	43.222	42.916	43.467	0					39	18	3	0	0	0	0.11198	1	8297	8297		29.841	0	1	250640			16103	7663	10630	10743	21748	21748					0.027888487179893673
QAENVDVKI	9	Unmodified	_QAENVDVKI_					0	0	0		PCDHGA10|p.L142V|1|0.28|ENSG00000253846|chr5:141413599-141413599|C/G|missense_variant	PCDHGA10|p.L142V|1|0.28|ENSG00000253846|chr5:141413599-141413599|C/G|missense_variant	PCDHGA10|p.L142V|1|0.28|ENSG00000253846|chr5:141413599-141413599|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.27447509765625	2	508.274564	1014.53457	-0.11033	-5.6079E-05	-0.25598	-0.00013011	-0.36631	-0.00018619	508.2745705918669	43.13	0.60099	43.219	42.955	43.556	0.089767					40	21	3	0	0	0	0.034936	1	8085	8085		47.594	0	1	205020			16104	7663	10630	10743	21749	21749					0.027888487179893673
QAEPLKTCEE	10	Unmodified	_QAEPLKTCEE_					0	0	0			REV__ENST00000483189.1_1_13:111893629-111928079:+|nuORF	REV__ENST00000483189.1_1_13:111893629-111928079:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2686157226562	2	574.268621	1146.52269	0.39697	0.00022797	0.46119	0.00026484	0.85816	0.00049281	574.2686568128314	62.942	1.823	63.014	62.659	64.482	0.072701					149	68	3	0	0	0	0.46083	1	14547	14547		2.7352	0	1	1023300	+		16105	8455	10631	10744	21750	21750					-0.04471136087499872
QAEQEDRAL	9	Unmodified	_QAEQEDRAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.25634765625	2	530.256902	1058.49925	-0.2051	-0.00010876	-0.2728	-0.00014466	-0.47791	-0.00025341	530.2566359006815	24.419	0.50091	24.419	24.232	24.732	0					97	41	3	0	0	0	0.29334	2	2644	2644;2678		7.609	2.3121	1	94211			16106	1919	10632	10745	21751;21752	21751					-0.027658138098104246
QAEQEDRAL	9	Unmodified	_QAEQEDRAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2567138671875	2	530.256902	1058.49925	0.038768	2.0557E-05	-0.38046	-0.00020174	-0.34169	-0.00018119	530.2565864130665	24.252	0.45218	24.351	24.16	24.613	0.099739					97	43	3	0	0	0	0.10543	3	2501	2469;2501;2541		31.268	18.226	1	92476			16107	1919	10632	10745	21753;21754;21755	21754					-0.027658138098104246
QAEQGQQEL	9	Unmodified	_QAEQGQQEL_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.74365234375	2	515.743628	1029.4727	-0.071356	-3.6802E-05	0.45905	0.00023675	0.38769	0.00019995	515.7436968631126	29.486	0.64429	29.486	29.252	29.896	0					80	33	3	0	0	0	0.00041987	3	4149	4107;4149;4194		133.05	65.214	1	282150			16108	5636	10633	10746	21756;21757;21758	21757					-0.0408550270115029
QAEQGQQEL	9	Unmodified	_QAEQGQQEL_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7437133789062	2	515.743628	1029.4727	-0.062002	-3.1977E-05	0.45674	0.00023556	0.39474	0.00020358	515.7437613825282	29.322	0.77768	29.4	29.186	29.963	0.078287					94	45	3	0	0	0	0.0045224	3	3979	3941;3979;4023		90.135	30.767	1	240120			16109	5636	10633	10746	21759;21760;21761	21760					-0.0408550270115029
QAEREEKRVL	10	Unmodified	_QAEREEKRVL_					0	0	0		ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.90185546875	3	419.901843	1256.6837	-0.14995	-6.2963E-05	-0.38186	-0.00016035	-0.53181	-0.00022331	419.901806471325	19.353	1.9929	19.353	19.124	21.117	0					510	217	5	0	0	0	0.00040827	1	1345	1345		86.276	41.331	1	1539200			16110	2314	10634	10747	21762	21762					0.06562374340751376
QAEREEKRVL	10	Unmodified	_QAEREEKRVL_					0	0	0		ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.90185546875	3	419.901843	1256.6837	-0.031824	-1.3363E-05	-0.53688	-0.00022544	-0.5687	-0.0002388	419.90177876276465	19.246	1.3024	19.341	19.142	20.445	0.095234					385	146	5	0	0	0	2.2499E-05	1	1243	1243		123.38	60.604	1	1805200			16111	2314	10634	10747	21763	21763					0.06562374340751376
QAEREEKRVL	10	Unmodified	_QAEREEKRVL_					0	0	0		ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3493041992188	2	629.349126	1256.6837	0.14802	9.3157E-05	0.033999	2.1397E-05	0.18202	0.00011455	629.3491868925952	19.248	0.6881	19.343	19.158	19.846	0.095232					219	78	4	0	0	0	0.010985	1	1255	1255		75.571	12.343	1	448190			16112	2314	10634	10747	21764	21764					0.06562374340751376
QAFSDRTI	8	Unmodified	_QAFSDRTI_					0	0	0			REV__ENST00000526402.1_1_11:43543828-43544716:+|nuORF	REV__ENST00000526402.1_1_11:43543828-43544716:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.2400817871094	2	469.240524	936.466495	-0.21131	-9.9156E-05	-0.16431	-7.7099E-05	-0.37562	-0.00017625	469.24038959117786	32.885	1.2248	32.885	32.658	33.883	0					121	47	4	0	0	0	0.53118	1	5239	5239		7.2892	0	1	703790	+		16113	12329	10635	10748	21765	21765					-0.004279761419979877
QAFYKYAK	8	Unmodified	_QAFYKYAK_					0	0	0		nc|ENSG00000172159|A2A2Y4-3|FRMD3;FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3	nc|ENSG00000172159|A2A2Y4-3|FRMD3	nc|ENSG00000172159|A2A2Y4-3|FRMD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.77069091796875	2	509.77146	1017.52837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.457	1	16.457	15.957	16.957	0								0	0	0	0.38822	1	731	731		0.69038	0	1				16114	4481	10636	10749	21766	21766					0.0203037527712695
QAGHLSCYSLF	11	Unmodified	_QAGHLSCYSLF_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.1831359863281	3	409.193858	1224.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.779	1	88.779	88.279	89.279	0								0	0	0	0.33405	1	22132	22132		2.8433	0.75728	1		+		16115	8495	10637	10750	21767	21767					-0.04355419751095724
QAGPEPAAQL	10	Unmodified	_QAGPEPAAQL_					0	0	0			REV__ENSG00000139540|ENST00000454355|SLC39A5	REV__ENSG00000139540|ENST00000454355|SLC39A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7514343261719	2	491.253631	980.49271	-0.081144	-3.9862E-05	-0.82077	-0.00040321	-0.90192	-0.00044307	491.2535570333268	33.086	0.95992	33.086	32.696	33.656	0					91	37	4	0	0	0	0.44246	1	5164	5164		6.2058	1.8765	1	284690	+		16116	9346	10638	10751	21768	21768					0.0016829302946916869
QAGSIAIVR	9	Unmodified	_QAGSIAIVR_					0	0	0		ENSG00000168404|ENST00000308807|MLKL	ENSG00000168404|ENST00000308807|MLKL	ENSG00000168404|ENST00000308807|MLKL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.7745056152344	2	457.774534	913.534515	0.32032	0.00014664	-0.27838	-0.00012744	0.04194	1.9199E-05	457.7743446976375	36.646	0.37234	36.646	36.46	36.833	0					23	13	2	0	0	0	0.27929	1	6281	6281		9.3831	4.6271	1	45694			16117	4288	10639	10752	21769	21769					0.07428893508676992
QAHLEVQQL	9	Unmodified	_QAHLEVQQL_					0	0	0		nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2880859375	2	533.288005	1064.56146	-0.075852	-4.0451E-05	0.0051214	2.7312E-06	-0.070731	-3.772E-05	533.2880335317461	43.352	1.3813	43.352	43.063	44.444	0					131	48	5	0	0	0	5.7754E-06	4	8322	8275;8322;8370;8417		152.89	76.664	1	3091300			16118	2810	10640	10753	21770;21771;21772;21773	21771					0.031759573291765264
QAHLEVQQL	9	Unmodified	_QAHLEVQQL_					0	0	0		nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2880859375	2	533.288005	1064.56146	0.13469	7.1827E-05	0.048276	2.5745E-05	0.18296	9.7572E-05	533.2880086880754	43.27	1.0161	43.359	43.116	44.132	0.089764					99	36	5	0	0	0	1.1335E-12	3	8159	8114;8159;8203		179.17	104.24	1	2449800			16119	2810	10640	10753	21774;21775;21776	21775					0.031759573291765264
QAICNLNITL	10	Unmodified	_QAICNLNITL_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;nc|ENSG00000145362|Q01484-7|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.8008422851562	2	551.799891	1101.58523	0.48796	0.00026926	1.0089	0.0005567	1.4968	0.00082595	551.8003523802	82.134	0.96576	82.156	81.938	82.904	0.021866					53	34	3	0	0	0	0.30966	1	19954	19954		21.537	1.0834	1	174720			16120	3245	10641	10754	21777	21777					0.03850054771351097
QAIDFPFLV	9	Unmodified	_QAIDFPFLV_					0	0	0		ENSG00000165059|ENST00000377276|PRKACG	ENSG00000165059|ENST00000377276|PRKACG	ENSG00000165059|ENST00000377276|PRKACG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.287109375	2	525.286943	1048.55933	0.36928	0.00019398	-0.038728	-2.0343E-05	0.33055	0.00017364	525.2868799090535	91.348	0.9865	91.348	90.911	91.897	0					79	35	4	0	0	0	0.24021	1	22954	22954		13.906	0.39817	1	1379100			16121	4053	10642	10755	21778	21778					0.03699528591369017
QAIENAHVL	9	Unmodified	_QAIENAHVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7693786621094	2	497.769448	993.524344	0.042784	2.1297E-05	-0.42964	-0.00021386	-0.38685	-0.00019256	497.76924965000273	39.755	0.57502	39.755	39.496	40.071	0					38	19	3	0	0	0	0.10833	1	7215	7215		30.637	18.996	1	121020			16122	2791	10643	10756	21779	21779					0.027322857834292336
QAIENAHVL	9	Unmodified	_QAIENAHVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7693176269531	2	497.769448	993.524344	0.14504	7.2194E-05	-0.40293	-0.00020057	-0.25789	-0.00012837	497.7692995336001	39.667	0.58992	39.755	39.474	40.064	0.088562					42	22	3	0	0	0	0.23216	1	7058	7058		14.838	7.549	1	94723			16123	2791	10643	10756	21780	21780					0.027322857834292336
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2740783691406	2	486.274032	970.533512	0.23796	0.00011572	0.075732	3.6827E-05	0.3137	0.00015254	486.2740008771157	74.731	1.1365	74.731	74.452	75.589	0					123	42	4	0	0	0	5.0762E-05	6	17845	17798;17845;17896;17941;17983;18033		139.14	46.316	1	3103300			16124	3591	10644	10757	21781;21782;21783;21784;21785;21786	21782					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.27410888671875	2	486.274032	970.533512	0.19133	9.3039E-05	0.18487	8.9896E-05	0.3762	0.00018293	486.2740440413136	74.697	0.69649	74.746	74.45	75.147	0.048546					88	24	5	0	0	0	0.00034446	4	17668	17624;17668;17711;17749		134.3	45.392	1	3053800			16125	3591	10644	10757	21787;21788;21789;21790	21788					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2737121582031	2	486.274032	970.533512	0.16022	7.7909E-05	0.066166	3.2175E-05	0.22638	0.00011008	486.2740198477992	75.16	0.43167	75.204	75.115	75.546	0.044037					25	15	2	0	0	0	0.006264	1	17799	17799		78.728	7.5945	1	624430			16126	3591	10644	10757	21791	21791					0.0470663434908829
QAILQEREL	9	Unmodified	_QAILQEREL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.G414Vfs*16|1|0.12|ENSG00000135829|chr1:182860092-182860093|-/TCTT|frameshift_variant;ENST00000477802.1_1_1:182828020-182829385:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.3092041015625	2	550.308938	1098.60332	-0.13183	-7.2547E-05	-0.18355	-0.00010101	-0.31538	-0.00017356	550.3088081355717	45.231	0.56192	45.231	45.024	45.586	0					48	19	4	0	0	0	0.034936	1	8840	8840		47.594	11.088	1	297470			16127	2748	10645	10758	21792	21792					0.05796513017708094
QAILQEREL	9	Unmodified	_QAILQEREL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.G414Vfs*16|1|0.12|ENSG00000135829|chr1:182860092-182860093|-/TCTT|frameshift_variant;ENST00000477802.1_1_1:182828020-182829385:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.30908203125	2	550.308938	1098.60332	0.16211	8.9209E-05	-0.17158	-9.4422E-05	-0.0094717	-5.2123E-06	550.308685117271	45.113	0.61971	45.2	44.988	45.608	0.08754					48	23	3	0	0	0	0.038996	1	8693	8693		45.74	14.472	1	226710			16128	2748	10645	10758	21793	21793					0.05796513017708094
QAIVDAEWNIL	11	Unmodified	_QAIVDAEWNIL_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000479109.2_1_5:92225632-92225905:-|nuORF	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.3345336914062	2	636.335153	1270.65575	0.23155	0.00014734	0.36599	0.00023289	0.59754	0.00038024	636.3351612062492	85.921	0.32206	85.921	85.757	86.079	0					14	12	2	0	0	0	0.38189	1	21278	21278		8.4443	2.2385	1	156840			16129	2738	10646	10759	21794	21794					0.031250513606664754
QAIVDAEWNIL	11	Unmodified	_QAIVDAEWNIL_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000479109.2_1_5:92225632-92225905:-|nuORF	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.3355712890625	2	636.335153	1270.65575	0.4417	0.00028107	-0.26847	-0.00017084	0.17324	0.00011024	636.334914123969	85.888	0.29268	85.913	85.796	86.088	0.025169					15	10	2	0	0	0	0.38189	1	21111	21111		8.4443	2.2385	1	108240			16130	2738	10646	10759	21795	21795					0.031250513606664754
QAKAQYLREVY	11	Unmodified	_QAKAQYLREVY_					0	0	0		ENST00000479014.1_1_7:87005212-87011518:+|nuORF	ENST00000479014.1_1_7:87005212-87011518:+|nuORF	ENST00000479014.1_1_7:87005212-87011518:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.9127502441406	3	456.91386	1367.71975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.351	1	68.414	67.914	68.914	0.063507								0	0	0	0.33799	1	15751	15751		1.4551	0.24029	1				16131	6731	10647	10760	21796	21796					0.05059831517587554
QAKREETI	8	Unmodified	_QAKREETI_					0	0	0		ENST00000264434.6_1_2:70410049-70418182:-|nuORF	ENST00000264434.6_1_2:70410049-70418182:-|nuORF	ENST00000264434.6_1_2:70410049-70418182:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7668151855469	2	487.766906	973.519259	-0.27205	-0.0001327	0.1642	8.0091E-05	-0.10785	-5.2604E-05	487.7669090873185	30.717	0.54471	30.717	30.533	31.078	0					68	26	3	0	0	0	0.39599	1	4536	4536		26.884	2.8631	1	240070			16132	5887	10648	10761	21797	21797					0.03143981920800343
QAKREETI	8	Unmodified	_QAKREETI_					0	0	0		ENST00000264434.6_1_2:70410049-70418182:-|nuORF	ENST00000264434.6_1_2:70410049-70418182:-|nuORF	ENST00000264434.6_1_2:70410049-70418182:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7668151855469	2	487.766906	973.519259	-0.23518	-0.00011471	0.30941	0.00015092	0.074235	3.6209E-05	487.7669416126753	30.679	0.65135	30.755	30.563	31.214	0.075403					81	36	3	0	0	0	0.4433	1	4406	4406		20.454	2.3073	1	173210			16133	5887	10648	10761	21798	21798					0.03143981920800343
QALESELYLL	10	Unmodified	_QALESELYLL_					0	0	0			REV__ENST00000565278.1_1_16:72763309-72763579:+|nuORF	REV__ENST00000565278.1_1_16:72763309-72763579:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.34326171875	2	589.818804	1177.62306	0.5054	0.00029809	0.86629	0.00051095	1.3717	0.00080905	589.8194307377403	85.789	0.5965	85.789	85.482	86.079	0					50	26	3	0	0	0	0.31565	1	21295	21295		8.1555	2.9249	1	218610	+		16134	11907	10649	10762	21799	21799					0.041348442378193795
QALGGFFTYFV	11	Unmodified	_QALGGFFTYFV_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.3034057617188	2	625.316232	1248.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.128	1	80.154	79.654	80.654	0.025513								0	0	0	0.31899	1	19343	19343		8.1555	0	1				16135	3899	10650	10763	21800	21800					0.0035458516586004407
QALKYEYEI	9	Unmodified	_QALKYEYEI_					0	0	0			REV__ENST00000504788.5_1_5:126112928-126171953:+|nuORF	REV__ENST00000504788.5_1_5:126112928-126171953:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7767333984375	2	578.797872	1155.58119	0.68862	0.00039857	-0.26778	-0.00015499	0.42083	0.00024358	578.7978763311332	54.996	0.27762	55.061	54.846	55.123	0.065128					16	11	2	0	0	0	0.22912	1	11696	11696		18.146	4.5315	1	96176	+		16136	8741	10651	10764	21801	21801					0.009622885492944988
QALLDLHAL	9	Unmodified	_QALLDLHAL_					0	0	0		FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant;ENSG00000087086|ENST00000331825|FTL	FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2897033691406	2	497.290017	992.565481	0.75551	0.00037571	-0.26693	-0.00013274	0.48858	0.00024297	497.2898555467995	66.941	0.50221	66.941	66.782	67.285	0					27	17	2	0	0	0	0.065541	2	15477	15477;15537		39.957	13.074	1	236130			16137	986	10652	10765	21802;21803	21802					0.06890046822900331
QALLDLHAL	9	Unmodified	_QALLDLHAL_					0	0	0		FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant;ENSG00000087086|ENST00000331825|FTL	FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2901611328125	2	497.290017	992.565481	0.78328	0.00038952	-0.37196	-0.00018497	0.41132	0.00020455	497.2898211973275	66.928	0.56848	66.993	66.839	67.408	0.065071					31	19	2	0	0	0	0.074645	3	15339	15291;15339;15390		37.974	17.52	1	231280			16138	986	10652	10765	21804;21805;21806	21805					0.06890046822900331
QALLHKFDF	9	Unmodified	_QALLHKFDF_					0	0	0		ENSG00000116745|ENST00000262340|RPE65	ENSG00000116745|ENST00000262340|RPE65	ENSG00000116745|ENST00000262340|RPE65	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8160400390625	2	559.803291	1117.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.917	1	76.917	76.417	77.417	0								0	0	0	0.23452	1	18522	18522		12.532	3.1841	1				16139	1972	10653	10766	21807	21807					0.03793735714225477
QALRDNSTM	9	Oxidation (M)	_QALRDNSTM(Oxidation (M))_		QALRDNSTM(1)		QALRDNSTM(100)	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2452392578125	2	526.24548	1050.47641	-0.3718	-0.00019566	-0.29936	-0.00015753	-0.67116	-0.00035319	526.2452546714968	18.658	0.66649	18.658	18.466	19.132	0					174	77	3	0	0	0	0.0039507	1	1171	1171		103.82	49.991	1	178880			16140	1108;897	10654	10767	21808	21808		51			-0.04681156198944336
QAPYSRLL	8	Unmodified	_QAPYSRLL_					0	0	0			REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF	REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.26898193359375	2	474.269084	946.523616	-0.075667	-3.5887E-05	0.15885	7.5336E-05	0.083179	3.9449E-05	474.26908513348417	50.57	0.7421	50.57	50.32	51.062	0					56	25	3	0	0	0	0.37883	2	10502	10502;10556		28.487	0	1	363210	+		16141	11955	10655	10768	21809;21810	21809					0.048214911343848144
QAPYSRLL	8	Unmodified	_QAPYSRLL_					0	0	0			REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF	REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2690734863281	2	474.269084	946.523616	0.0028298	1.3421E-06	0.26311	0.00012479	0.26594	0.00012613	474.26912236250934	50.494	0.62001	50.567	50.319	50.939	0.07312					44	21	3	0	0	0	0.32977	1	10361	10361		32.305	0	1	255930	+		16142	11955	10655	10768	21811	21811					0.048214911343848144
QAPYSRLL	8	Unmodified	_QAPYSRLL_					0	0	0			REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF	REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	474.269084	946.523616	-0.075667	-3.5887E-05	0.15885	7.5336E-05	0.083179	3.9449E-05	474.26908513348417	50.57	0.7421	50.57	50.32	51.062	0	0.0017876	-3.0505E-05	NaN	32.305	56	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363210	+		16143	11955	10655	10768							0.048214911343848144
QAPYSRLL	8	Unmodified	_QAPYSRLL_					0	0	0			REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF	REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	474.269084	946.523616	0.0028298	1.3421E-06	0.26311	0.00012479	0.26594	0.00012613	474.26912236250934	50.494	0.62001	50.567	50.319	50.939	0.07312	-0.0017876	6.8396E-05	NaN	32.305	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255930	+		16144	11955	10655	10768							0.048214911343848144
QAQARHLLF	9	Unmodified	_QAQARHLLF_					0	0	0			REV__ENSG00000160801|ENST00000449590|PTH1R	REV__ENSG00000160801|ENST00000449590|PTH1R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.3084716796875	2	542.306532	1082.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.97	1	101.01	100.51	101.51	0.042839								0	0	0	0.28527	1	25687	25687		2.0598	0	1		+		16145	9859	10656	10769	21812	21812					0.06051673665592716
QAQKDELIL	9	Unmodified	_QAQKDELIL_					0	0	0		ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF	ENSG00000163682|ENST00000295955|RPL9	ENSG00000163682|ENST00000295955|RPL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2981567382812	2	529.298039	1056.58152	0.24229	0.00012824	-0.075797	-4.0119E-05	0.16649	8.8124E-05	529.2979558860295	46.732	1.4683	46.732	46.55	48.018	0					156	61	4	0	0	0	5.7754E-06	3	9344	9299;9344;9395		152.89	74.737	1	5495800			16146	3935	10657	10770	21813;21814;21815	21814					0.055497082691545074
QAQKDELIL	9	Unmodified	_QAQKDELIL_					0	0	0		ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF	ENSG00000163682|ENST00000295955|RPL9	ENSG00000163682|ENST00000295955|RPL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.298095703125	2	529.298039	1056.58152	0.23724	0.00012557	0.0302	1.5985E-05	0.26744	0.00014156	529.2980148725633	46.651	1.2998	46.734	46.546	47.846	0.083096					152	61	4	0	0	0	3.513E-06	3	9185	9141;9185;9229		155.03	73.136	1	4970100			16147	3935	10657	10770	21816;21817;21818	21817					0.055497082691545074
QAQLSIRV	8	Unmodified	_QAQLSIRV_					0	0	0			REV__ENST00000485483.1_1_X:54835569-54835758:+|nuORF	REV__ENST00000485483.1_1_X:54835569-54835758:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.7746276855469	2	457.774534	913.534515	0.1289	5.9008E-05	-0.013489	-6.1749E-06	0.11541	5.2834E-05	457.77449447639896	36.546	0.43662	36.628	36.434	36.87	0.081715					28	18	2	0	0	0	0.53894	1	6134	6134		2.0598	0	1	49898	+		16148	12119	10658	10771	21819	21819					0.07428893508654255
QAQSPETSV	9	Unmodified	_QAQSPETSV_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;NFE2L2|p.I202Yfs*2|1|0.31|ENSG00000116044|chr2:177231999-177232000|-/A|frameshift_variant	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7269592285156	2	473.727446	945.44034	-0.38529	-0.00018252	-0.22123	-0.0001048	-0.60651	-0.00028732	473.7273446499366	30.234	0.34864	30.234	30.055	30.404	0					28	16	2	0	0	0	0.2546	1	4363	4363		12.241	4.9514	1	33395			16149	1939	10659	10772	21820	21820					-0.03456290104122672
QAQSPETSV	9	Unmodified	_QAQSPETSV_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;NFE2L2|p.I202Yfs*2|1|0.31|ENSG00000116044|chr2:177231999-177232000|-/A|frameshift_variant	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	473.727446	945.44034	-0.37729	-0.00017873	0.047866	2.2676E-05	-0.32943	-0.00015606	473.72741065371645	30.141	0.36462	30.216	30.061	30.426	0.075403	-0.0090435	0.00013861	NaN	12.241	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25883			16150	1939	10659	10772							-0.03456290104122672
QARKIESTARQ	11	Unmodified	_QARKIESTARQ_					0	0	0		TAAR9|p.S236R|1|0.26|ENSG00000237110|chr6:132538997-132538997|C/G|missense_variant	TAAR9|p.S236R|1|0.26|ENSG00000237110|chr6:132538997-132538997|C/G|missense_variant	TAAR9|p.S236R|1|0.26|ENSG00000237110|chr6:132538997-132538997|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.7836303710938	2	644.360025	1286.7055	0.13083	8.4304E-05	0.53493	0.00034469	0.66576	0.00042899	644.3602790363155	89.396	0.97525	89.396	88.982	89.958	0					74	38	3	0	0	0	0.31023	1	22466	22466		8.1555	0	1	219250			16151	13423	10660	10773	21821	21821					0.0736117908934375
QARYEEEVL	9	Unmodified	_QARYEEEVL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7822265625	2	568.782753	1135.55095	-0.5487	-0.00031209	-0.42461	-0.00024151	-0.97331	-0.0005536	568.7824777248971	41.36	0.56501	41.36	41.146	41.711	0					54	20	4	0	0	0	0.028398	3	7690	7690;7737;7777		52.268	19.963	1	347820			16152	5758	10661	10774	21822;21823;21824	21822					-0.011400701159118398
QARYEEEVL	9	Unmodified	_QARYEEEVL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7823486328125	2	568.782753	1135.55095	-0.37197	-0.00021157	-0.28981	-0.00016484	-0.66178	-0.00037641	568.7824579444846	41.283	0.51398	41.373	41.153	41.667	0.089767					50	19	4	0	0	0	0.11547	2	7537	7537;7580		29.082	3.6823	1	297280			16153	5758	10661	10774	21825;21826	21825					-0.011400701159118398
QASNSAHEL	9	Unmodified	_QASNSAHEL_					0	0	0		nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3;ENSG00000113971|ENST00000337331|NPHP3	nc|ENSG00000113971|Q7Z494-3|NPHP3	nc|ENSG00000113971|Q7Z494-3|NPHP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7249450683594	2	478.725238	955.435923	-0.57303	-0.00027433	0.0061692	2.9534E-06	-0.56686	-0.00027137	478.72518664574017	20.236	0.61845	20.236	20.059	20.678	0					147	62	4	0	0	0	0.15282	1	1561	1561		24.021	10.513	1	194960			16154	1822	10662	10775	21827	21827					-0.04357754527052293
QASNSAHEL	9	Unmodified	_QASNSAHEL_					0	0	0		nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3;ENSG00000113971|ENST00000337331|NPHP3	nc|ENSG00000113971|Q7Z494-3|NPHP3	nc|ENSG00000113971|Q7Z494-3|NPHP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.72509765625	2	478.725238	955.435923	-0.16325	-7.8152E-05	-0.21573	-0.00010328	-0.37898	-0.00018143	478.72507360314927	20.143	0.43192	20.238	20.086	20.518	0.095232					105	46	3	0	0	0	0.27929	2	1440	1411;1440		9.3831	4.6271	1	146900			16155	1822	10662	10775	21828;21829	21829					-0.04357754527052293
QASPASSLLV	10	Unmodified	_QASPASSLLV_					0	0	0		ENST00000262949.7_1_19:3573736-3575577:+|nuORF	ENST00000262949.7_1_19:3573736-3575577:+|nuORF	ENST00000262949.7_1_19:3573736-3575577:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7721252441406	2	486.771657	971.528761	-0.084622	-4.1192E-05	0.67431	0.00032823	0.58968	0.00028704	486.7717026306865	34.843	0.38187	34.919	34.718	35.1	0.076244					37	15	3	0	0	0	0.45794	1	5616	5616		3.2813	1.4371	1	64438			16156	5874	10663	10776	21830	21830					0.041857502063294305
QATAEANNL	9	Unmodified	_QATAEANNL_					0	0	0		nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;ENST00000477642.5_1_2:38525261-38527422:-|nuORF;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;ENSG00000184743|ENST00000398868|ATL3	nc|ENSG00000119787|Q8NHH9-3|ATL2;ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.2274169921875	2	466.227613	930.440674	-0.13218	-6.1627E-05	-0.23452	-0.00010934	-0.36671	-0.00017097	466.22745017881675	31.78	0.75407	31.78	31.552	32.307	0					72	29	4	0	0	0	0.00087611	2	4842	4801;4842		125.53	21.781	1	523660			16157	4991;2089	10664	10777	21831;21832	21832					-0.027328703842840696
QATAEANNL	9	Unmodified	_QATAEANNL_					0	0	0		nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;ENST00000477642.5_1_2:38525261-38527422:-|nuORF;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;ENSG00000184743|ENST00000398868|ATL3	nc|ENSG00000119787|Q8NHH9-3|ATL2;ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.2274169921875	2	466.227613	930.440674	-0.27472	-0.00012808	-0.034843	-1.6245E-05	-0.30956	-0.00014433	466.22751260002354	31.697	0.70828	31.771	31.515	32.223	0.07378					82	32	4	0	0	0	0.0047429	2	4689	4650;4689		83.429	11.506	1	418430			16158	4991;2089	10664	10777	21833;21834	21834					-0.027328703842840696
QATAQDPVF	9	Unmodified	_QATAQDPVF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.740478515625	2	488.740357	975.46616	0.089028	4.3511E-05	0.17841	8.7198E-05	0.26744	0.00013071	488.7402807730745	49.898	0.55369	49.898	49.653	50.206	0					46	19	3	0	0	0	0.13341	1	10311	10311		26.268	0.86883	1	317420			16159	5216	10665	10778	21835	21835					-0.022553958618573233
QATAQDPVF	9	Unmodified	_QATAQDPVF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7405090332031	2	488.740357	975.46616	0.1061	5.1856E-05	-0.035945	-1.7568E-05	0.070157	3.4289E-05	488.74031642480037	49.841	0.55946	49.914	49.622	50.181	0.07312					40	19	3	0	0	0	0.098463	1	10127	10127		32.786	0.4802	1	313580			16160	5216	10665	10778	21836	21836					-0.022553958618573233
QATREYTL	8	Unmodified	_QATREYTL_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2535095214844	2	491.253631	980.49271	-0.081144	-3.9862E-05	-0.82077	-0.00040321	-0.90192	-0.00044307	491.2535570333268	33.086	0.95992	33.086	32.696	33.656	0					91	37	4	0	0	0	0.1417	2	5238	5197;5238		47.749	7.7914	1	284690			16161	2325	10666	10779	21837;21838	21838					0.0016829302946916869
QATREYTL	8	Unmodified	_QATREYTL_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.25347900390625	2	491.253631	980.49271	-0.050145	-2.4634E-05	-0.90666	-0.0004454	-0.95681	-0.00047003	491.25350062201125	33.04	0.93028	33.115	32.734	33.665	0.074326					88	38	3	0	0	0	0.40691	1	5094	5094		25.399	3.6527	1	260890			16162	2325	10666	10779	21839	21839					0.0016829302946916869
QAVEGEIDL	9	Unmodified	_QAVEGEIDL_					0	0	0		ENST00000493076.5_1_22:35806581-35817581:+|nuORF;ENSG00000100297|ENST00000216122|MCM5	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.24554443359375	2	487.245472	972.476391	-0.26848	-0.00013082	0.86128	0.00041966	0.5928	0.00028884	487.24589742667064	58.833	0.88752	58.833	58.256	59.144	0					48	32	2	0	0	0	0.020768	1	12983	12983		57.722	0	1	773350			16163	1180	10667	10780	21840	21840					-0.01094832927265088
QAVEGEIDL	9	Unmodified	_QAVEGEIDL_					0	0	0		ENST00000493076.5_1_22:35806581-35817581:+|nuORF;ENSG00000100297|ENST00000216122|MCM5	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2454528808594	2	487.245472	972.476391	0.020144	9.8149E-06	-0.088694	-4.3216E-05	-0.068551	-3.3401E-05	487.24532813181	58.663	0.55275	58.734	58.561	59.114	0.070477					32	19	2	0	0	0	0.0044564	1	12825	12825		92.653	7.0118	1	827520			16164	1180	10667	10780	21841	21841					-0.01094832927265088
QAVKDYEL	8	Unmodified	_QAVKDYEL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2503662109375	2	483.250557	964.486562	0.067783	3.2756E-05	-0.53795	-0.00025996	-0.47017	-0.00022721	483.25023238867965	38.308	0.86839	38.308	38.05	38.918	0					68	31	4	0	0	0	0.12818	2	6769	6769;6816		49.933	3.912	1	474710			16165	2050	10668	10781	21842;21843	21842					0.002897747979545784
QAVKDYEL	8	Unmodified	_QAVKDYEL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2504577636719	2	483.250557	964.486562	0.088204	4.2625E-05	-0.32095	-0.0001551	-0.23274	-0.00011247	483.2503875645718	38.207	0.76168	38.294	38.073	38.835	0.08688					63	28	4	0	0	0	0.15358	1	6607	6607		46.021	3.9264	1	395610			16166	2050	10668	10781	21844	21844					0.002897747979545784
QAVKEYNAL	9	Unmodified	_QAVKEYNAL_					0	0	0		ENSG00000087884|ENST00000393427|AAMDC	ENSG00000087884|ENST00000393427|AAMDC	ENSG00000087884|ENST00000393427|AAMDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.2772216796875	2	518.277106	1034.53966	0.13257	6.8708E-05	0.1195	6.1936E-05	0.25207	0.00013064	518.2770995295484	35.197	1.2091	35.197	34.975	36.184	0					99	44	4	0	0	0	0.0016252	1	5837	5837		118.07	59.39	1	902380			16167	1004	10669	10782	21845	21845					0.023771525806068894
QAVKEYNAL	9	Unmodified	_QAVKEYNAL_					0	0	0		ENSG00000087884|ENST00000393427|AAMDC	ENSG00000087884|ENST00000393427|AAMDC	ENSG00000087884|ENST00000393427|AAMDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.2771606445312	2	518.277106	1034.53966	0.12345	6.3981E-05	0.078159	4.0508E-05	0.20161	0.00010449	518.277049439268	35.137	0.85605	35.216	34.988	35.844	0.078827					91	33	4	0	0	0	0.0016252	1	5700	5700		118.07	49.988	1	757920			16168	1004	10669	10782	21846	21846					0.023771525806068894
QAVQEATRL	9	Unmodified	_QAVQEATRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2802429199219	2	508.28018	1014.54581	-0.1518	-7.7157E-05	-0.22272	-0.00011321	-0.37452	-0.00019036	508.2802270661178	32.706	1.2429	32.706	32.47	33.713	0					149	52	5	0	0	0	1.0251E-17	4	5102	5060;5102;5151;5198		205.91	91.264	1	2197800			16169	4738	10670	10783	21847;21848;21849;21850	21848					0.03911670812135526
QAVQEATRL	9	Unmodified	_QAVQEATRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2801513671875	2	508.28018	1014.54581	-0.084236	-4.2816E-05	-0.19882	-0.00010106	-0.28305	-0.00014387	508.2801641349858	32.651	0.98787	32.724	32.491	33.479	0.07378					149	45	5	0	0	0	2.3286E-13	3	4964	4925;4964;5011		192.32	88.967	1	1849200			16170	4738	10670	10783	21851;21852;21853	21852					0.03911670812135526
QAVQELVSL	9	Unmodified	_QAVQELVSL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7796630859375	2	493.779482	985.544411	0.5038	0.00024877	-0.11588	-5.7222E-05	0.38791	0.00019154	493.7793806562356	67.73	0.48349	67.73	67.515	67.998	0					28	18	2	0	0	0	0.28919	1	15752	15752		8.1555	0	1	246040			16171	1607	10671	10784	21854	21854					0.05106036723384477
QAVQELVSL	9	Unmodified	_QAVQELVSL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7801208496094	2	493.779482	985.544411	0.70593	0.00034857	-0.10896	-5.38E-05	0.59697	0.00029477	493.77934318131827	67.683	0.38426	67.746	67.551	67.935	0.063507					22	12	2	0	0	0	0.19307	1	15537	15537		19.362	3.2128	1	261210			16172	1607	10671	10784	21855	21855					0.05106036723384477
QAVQVDVEL	9	Unmodified	_QAVQVDVEL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.769287109375	2	500.769114	999.523675	0.53759	0.00026921	-0.034027	-1.704E-05	0.50356	0.00025217	500.7689903686028	64.253	1.2969	64.253	63.896	65.192	0					115	46	4	0	0	0	0.0010793	3	14618	14618;14665;14710		122.18	43.451	1	1610500			16173	5032	10672	10785	21856;21857;21858	21856					0.023894463437159175
QAVQVDVEL	9	Unmodified	_QAVQVDVEL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.769287109375	2	500.769114	999.523675	0.44878	0.00022474	0.028991	1.4518E-05	0.47777	0.00023925	500.769059145562	64.035	1.157	64.106	63.859	65.015	0.071014					102	41	4	0	0	0	0.0042703	3	14555	14436;14502;14555		99.755	39.681	1	2324900			16174	5032	10672	10785	21859;21860;21861	21861					0.023894463437159175
QAVRDTATL	9	Unmodified	_QAVRDTATL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.766845703125	2	487.766906	973.519259	-0.27205	-0.0001327	0.1642	8.0091E-05	-0.10785	-5.2604E-05	487.7669090873185	30.717	0.54471	30.717	30.533	31.078	0					68	26	3	0	0	0	0.098463	1	4498	4498		32.786	7.3864	1	240070			16175	568	10673	10786	21862	21862					0.03143981920800343
QAVREYTL	8	Unmodified	_QAVREYTL_					0	0	0		KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2641296386719	2	490.263999	978.513445	0.2923	0.0001433	0.1452	7.1188E-05	0.4375	0.00021449	490.26398580440934	38.3	0.43801	38.3	38.076	38.514	0					23	14	2	0	0	0	0.53118	1	6790	6790		7.2892	0	1	56253			16176	797	10674	10787	21863	21863					0.023328834091330464
QAVREYTL	8	Unmodified	_QAVREYTL_					0	0	0		KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.26416015625	2	490.263999	978.513445	0.28962	0.00014199	0.2041	0.00010006	0.49372	0.00024206	490.264089621292	38.206	0.5172	38.293	38.047	38.564	0.08688					26	19	2	0	0	0	0.51967	1	6627	6627		10.074	2.7847	1	54605			16177	797	10674	10787	21864	21864					0.023328834091330464
QAVRQDPLL	9	Unmodified	_QAVRQDPLL_					0	0	0		ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17	ENSG00000115234|ENST00000233575|SNX17	ENSG00000115234|ENST00000233575|SNX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.2978515625	2	520.298373	1038.58219	-0.50466	-0.00026257	-0.72753	-0.00037853	-1.2322	-0.00064111	520.2982642875315	41.42	2.8881	41.42	41.146	44.034	0					242	102	5	0	0	0	0.00041987	3	7697	7697;7746;7787		133.05	0	1	8294500			16178	1889	10675	10788	21865;21866;21867	21865					0.06444547708861137
QAVRQDPLL	9	Unmodified	_QAVRQDPLL_					0	0	0		ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17	ENSG00000115234|ENST00000233575|SNX17	ENSG00000115234|ENST00000233575|SNX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.298095703125	2	520.298373	1038.58219	-0.39074	-0.0002033	-0.61372	-0.00031932	-1.0045	-0.00052262	520.2982607295264	41.352	2.5888	41.442	41.153	43.742	0.089767					222	98	5	0	0	0	5.8571E-07	3	7587	7545;7587;7632		157.8	0	1	6927200			16179	1889	10675	10788	21868;21869;21870	21869					0.06444547708861137
QAVVEEQVL	9	Unmodified	_QAVVEEQVL_					0	0	0		nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.77685546875	2	507.776939	1013.53933	0.46453	0.00023588	-0.43102	-0.00021886	0.03351	1.7016E-05	507.7766496945605	55.311	0.49332	55.311	55.085	55.579	0					40	17	4	0	0	0	0.11383	1	11943	11943		29.437	2.2139	1	261280			16180	885	10676	10789	21871	21871					0.033097328607595955
QAVVEEQVL	9	Unmodified	_QAVVEEQVL_					0	0	0		nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7770080566406	2	507.776939	1013.53933	0.44087	0.00022386	-0.52993	-0.00026909	-0.089061	-4.5223E-05	507.7767335191929	55.253	0.3867	55.318	55.161	55.548	0.065128					33	14	3	0	0	0	0.19661	1	11777	11777		27.223	7.8613	1	189340			16181	885	10676	10789	21872	21872					0.033097328607595955
QAWSERRR	8	Unmodified	_QAWSERRR_					0	0	0			REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF	REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7900390625	2	544.789038	1087.56352	0.21886	0.00011923	-1.2856	-0.0007004	-1.0668	-0.00058117	544.7884933713938	17.416	0.16465	17.5	17.399	17.563	0.083694					25	19	2	0	0	0	0.54081	1	854	854		0.79363	0.10326	1	15919	+		16182	11745	10677	10790	21873	21873					0.0232443085765226
QAYIDFEM	8	Oxidation (M)	_QAYIDFEM(Oxidation (M))_		QAYIDFEM(1)		QAYIDFEM(75)	0	0	1		ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3;nc|ENSG00000075856|Q15020-2|SART3	ENSG00000075856|ENST00000546815|SART3	ENSG00000075856|ENST00000546815|SART3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3011474609375	2	516.720775	1031.427	0.48259	0.00024936	-0.72142	-0.00037277	-0.23883	-0.00012341	516.720329123408	60.789	0.44418	60.789	60.558	61.002	0					22	15	2	0	0	0	0.13173	1	13569	13569		74.929	17.458	1	126860			16183	832	10678	10791	21874	21874		47			-0.08745864207730847
QAYIDFEM	8	Oxidation (M)	_QAYIDFEM(Oxidation (M))_					0	0	1		ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3;nc|ENSG00000075856|Q15020-2|SART3	ENSG00000075856|ENST00000546815|SART3	ENSG00000075856|ENST00000546815|SART3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	516.720775	1031.427	0.25341	0.00013094	-0.15908	-8.22E-05	0.094327	4.8741E-05	516.7205002065107	60.576	0.42202	60.65	60.578	61	0.073421	-0.069458	0.00046069	NaN	74.929	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170650			16184	832	10678	10791				47			-0.08745864207730847
QCEIQEHAK	9	Unmodified	_QCEIQEHAK_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.255859375	2	543.255848	1084.49714	-0.022846	-1.2411E-05	-0.074747	-4.0607E-05	-0.097594	-5.3018E-05	543.255790886655	26.311	1.0461	26.403	26.149	27.195	0.091507					191	82	4	0	0	0	0.34646	1	3266	3266		0.6015	0	1	250980			16185	2103	10679	10792	21875	21875					-0.04172565819294505
QCNMNDEAE	9	Unmodified	_QCNMNDEAE_					0	0	0			REV__ENST00000468770.1_1_22:24953642-24953888:+|nuORF	REV__ENST00000468770.1_1_22:24953642-24953888:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.1851806640625	2	527.184231	1052.35391	-0.017668	-9.3143E-06	1.5904	0.00083843	1.5727	0.00082911	527.1850567826107	22.231	0.36259	22.333	22.083	22.445	0.10178					35	28	2	0	0	0	0.34704	1	1929	1929		0.52476	0.52476	1	15316	+		16186	8364	10680	10793	21876	21876					-0.17017360992667818
QCQEQAQL	8	Unmodified	_QCQEQAQL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2159729003906	2	474.216192	946.41783	-0.054418	-2.5806E-05	1.342	0.00063638	1.2875	0.00061057	474.2162931378934	36.583	0.56498	36.583	36.352	36.917	0					39	20	3	0	0	0	0.37119	1	6253	6253		29.082	2.8134	1	78721	+		16187	7964	10681	10794	21877	21877					-0.05752212773404608
QCQEQAQL	8	Unmodified	_QCQEQAQL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	474.216192	946.41783	-0.054418	-2.5806E-05	1.342	0.00063638	1.2875	0.00061057	474.2162931378934	36.583	0.56498	36.583	36.352	36.917	0	0.01577	-0.0001201	NaN	29.082	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78721	+		16188	7964	10681	10794							-0.05752212773404608
QCQGAVEEKV	10	Unmodified	_QCQGAVEEKV_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.763427734375	2	545.763506	1089.51246	-0.24216	-0.00013216	-0.01048	-5.7197E-06	-0.25264	-0.00013788	545.7635454628818	22.779	0.71716	22.779	22.337	23.055	0					135	60	3	0	0	0	0.45945	1	2217	2217		2.9952	0	1	37211	+		16189	12836	10682	10795	21878	21878					-0.028716990220800653
QCQGAVEEKV	10	Unmodified	_QCQGAVEEKV_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7626953125	2	545.763506	1089.51246	0.0080832	4.4115E-06	-0.088642	-4.8378E-05	-0.080559	-4.3966E-05	545.7634393909444	23.619	0.60218	23.719	23.436	24.038	0.099739					80	57	2	0	0	0	0.46899	1	2361	2361		1.1933	0	1	24876	+		16190	12836	10682	10795	21879	21879					-0.028716990220800653
QCQGAVEEKV	10	Unmodified	_QCQGAVEEKV_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.763506	1089.51246	0.051935	2.8344E-05	-0.58414	-0.0003188	-0.53221	-0.00029046	545.7634508303852	22.373	0.26406	22.475	22.263	22.527	0.10178	-0.15209	-0.00055968	NaN	2.9952	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24510	+		16191	12836	10682	10795							-0.028716990220800653
QCRLCHCNVP	10	Unmodified	_QCRLCHCNVP_					0	0	0		ENST00000422941.6_1_14:23607156-23612305:-|nuORF	ENST00000422941.6_1_14:23607156-23612305:-|nuORF	ENST00000422941.6_1_14:23607156-23612305:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7578125	2	586.75972	1171.50489	0.42707	0.00025059	-1.8656	-0.0010947	-1.4385	-0.00084408	586.7584783220375	36.704	0.57286	36.704	36.492	37.065	0					32	21	2	0	0	0	0.45627	1	6332	6332		3.5965	0.60125	1	30934			16192	6458	10683	10796	21880	21880					-0.07400453095010562
QCRLCHCNVP	10	Unmodified	_QCRLCHCNVP_					0	0	0		ENST00000422941.6_1_14:23607156-23612305:-|nuORF	ENST00000422941.6_1_14:23607156-23612305:-|nuORF	ENST00000422941.6_1_14:23607156-23612305:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7591552734375	2	586.75972	1171.50489	0.58473	0.0003431	-1.5378	-0.00090229	-0.95302	-0.0005592	586.758890493447	36.54	0.29668	36.621	36.516	36.813	0.081715					15	11	2	0	0	0	0.46746	1	6152	6152		1.4819	0.28856	1	40439			16193	6458	10683	10796	21881	21881					-0.07400453095010562
QCTFINDFF	9	Unmodified	_QCTFINDFF_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7281494140625	2	567.749867	1133.48518	0.40727	0.00023123	-3.7491	-0.0021285	-3.3418	-0.0018973	567.7474879755684	83.241	0.40198	83.241	83.023	83.425	0					21	13	2	0	0	0	0.24021	1	20446	20446		13.906	5.3128	1	92611			16194	3724	10684	10797	21882	21882					-0.07622182562477064
QDAIENTEH	9	Unmodified	_QDAIENTEH_					0	0	0			REV__IFT172|p.S671Y|1|0.12|ENSG00000138002|chr2:27463107-27463107|G/T|missense_variant	REV__IFT172|p.S671Y|1|0.12|ENSG00000138002|chr2:27463107-27463107|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2642822265625	2	528.73326	1055.45197	0.1903	0.00010062	-0.72926	-0.00038558	-0.53896	-0.00028497	528.7326602278567	71.722	0.4401	71.781	71.542	71.982	0.058578					23	15	2	0	0	0	0.25875	1	16838	16838		1.8442	0	1	220950	+		16195	9300	10685	10798	21883	21883					-0.07354093080812163
QDAIENTEH	9	Unmodified	_QDAIENTEH_					0	0	0			REV__IFT172|p.S671Y|1|0.12|ENSG00000138002|chr2:27463107-27463107|G/T|missense_variant	REV__IFT172|p.S671Y|1|0.12|ENSG00000138002|chr2:27463107-27463107|G/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	528.73326	1055.45197	0.20629	0.00010907	-0.6108	-0.00032295	-0.40452	-0.00021388	528.7326148462627	71.814	0.46989	71.814	71.502	71.972	0	0.0167	6.9547E-05	NaN	1.8442	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166130	+		16196	9300	10685	10798							-0.07354093080812163
QDAITLTTF	9	Unmodified	_QDAITLTTF_					0	0	0			REV__nc|ENSG00000131759|P10276-3|RARA	REV__nc|ENSG00000131759|P10276-3|RARA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.27667236328125	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.738	1	51.738	51.238	52.238	0								0	0	0	0.25361	1	10841	10841		8.5933	0	1		+		16197	9094	10686	10799	21884	21884					0.008860439694217348
QDAPVPKLI	9	Unmodified	_QDAPVPKLI_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7920837402344	2	490.792392	979.570232	0.36049	0.00017693	-0.073244	-3.5948E-05	0.28725	0.00014098	490.792234510063	68.078	1.0785	68.078	67.832	68.911	0					93	39	3	0	0	0	0.30757	1	15953	15953		5.7319	0	1	781040	+		16198	8186	10687	10800	21885	21885					0.07962930965663872
QDEFFSGD	8	Unmodified	_QDEFFSGD_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.1597900390625	2	472.685247	943.355941	-0.37145	-0.00017558	1.6355	0.00077306	1.264	0.00059748	472.6859311438075	28.706	0.40392	28.706	28.463	28.867	0					28	18	2	0	0	0	0.3576	1	3923	3923		4.3292	4.3292	1	25910			16199	3856	10688	10801	21886	21886					-0.11800240920888427
QDEILAHR	8	Unmodified	_QDEILAHR_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2587890625	2	491.259248	980.503943	-0.22902	-0.00011251	-0.20028	-9.839E-05	-0.4293	-0.0002109	491.2594703993397	23.919	3.2751	23.919	23.657	26.932	0					623	261	5	0	0	0	0.53494	5	2862	2862;2979;3058;3134;3212		4.756	0	1	3789000			16200	4437	10689	10802	21887;21888;21889;21890;21891	21887					0.012911151236039586
QDEILAHR	8	Unmodified	_QDEILAHR_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2590026855469	2	491.259248	980.503943	-0.024674	-1.2121E-05	-0.2905	-0.00014271	-0.31518	-0.00015483	491.25944100011304	23.734	2.802	23.833	23.526	26.328	0.099739					550	251	5	0	0	0	0.53494	2	2702	2664;2702		4.756	0	1	4289800			16201	4437	10689	10802	21892;21893	21893					0.012911151236039586
QDENMDIDFY	10	Unmodified	_QDENMDIDFY_					0	0	0		tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.2532348632812	2	645.253168	1288.49178	0.16403	0.00010584	-0.017342	-1.119E-05	0.14668	9.4648E-05	645.252890731511	83.567	0.66382	83.589	83.251	83.915	0.021744					36	23	2	0	0	0	0.45627	1	20423	20423		3.5965	0.31518	1	215130			16202	13453	10690	10803	21894	21894					-0.14092334192400813
QDERLIYF	8	Unmodified	_QDERLIYF_					0	0	0		ENSG00000037280|ENST00000261937|FLT4;nc|ENSG00000037280|P35916-1|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;ENST00000507059.5_1_5:180043993-180056331:-|nuORF;nc|ENSG00000037280|P35916-3|FLT4	ENSG00000037280|ENST00000261937|FLT4	ENSG00000037280|ENST00000261937|FLT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7965087890625	2	542.277106	1082.53966	0.36725	0.00019915	0.7357	0.00039895	1.103	0.00059811	542.2774069736579	83.476	0.91003	83.497	83.1	84.01	0.021744					54	31	2	0	0	0	0.52924	1	20458	20458		8.5933	0	1	113630			16203	522	10691	10804	21895	21895					0.0016915258061089844
QDEVIEKSW	9	Unmodified	_QDEVIEKSW_					0	0	0		NRDE2|p.M339Ifs*37|1|0.26|ENSG00000119720|chr14:90303114-90303115|-/A|frameshift_variant	NRDE2|p.M339Ifs*37|1|0.26|ENSG00000119720|chr14:90303114-90303115|-/A|frameshift_variant	NRDE2|p.M339Ifs*37|1|0.26|ENSG00000119720|chr14:90303114-90303115|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2775268554688	2	567.277303	1132.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.25	1	105.29	104.79	105.79	0.034004								0	0	0	0.27613	1	26930	26930		3.9444	0	1				16204	7650	10692	10805	21896	21896					-0.020914724902013404
QDFEKQKVS	9	Unmodified	_QDFEKQKVS_					0	0	0		ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000421655.1_1_9:108522415-108523033:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7853393554688	2	554.785296	1107.55604	0.14679	8.1435E-05	0.055212	3.0631E-05	0.202	0.00011207	554.7852833379744	30.588	0.41458	30.664	30.504	30.919	0.075403					37	25	2	0	0	0	0.25996	1	4390	4390		0.45834	0	1	20173			16205	6454	10693	10806	21897	21897					0.006562337467130419
QDFEKQKVS	9	Unmodified	_QDFEKQKVS_					0	0	0		ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000421655.1_1_9:108522415-108523033:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	554.785296	1107.55604	0.024657	1.3679E-05	0.28841	0.00016001	0.31307	0.00017368	554.7851631206554	30.625	0.4292	30.625	30.48	30.909	0	-0.019332	0.00014462	NaN	0.45834	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24399			16206	6454	10693	10806							0.006562337467130419
QDFQAGEVAF	10	Unmodified	_QDFQAGEVAF_					0	0	0		nc|ENSG00000267493|Q8TBR5|CIRBP-AS1	nc|ENSG00000267493|Q8TBR5|CIRBP-AS1	nc|ENSG00000267493|Q8TBR5|CIRBP-AS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7408447265625	2	556.256371	1110.49819	0.8711	0.00048455	0.78083	0.00043434	1.6519	0.0009189	556.256737488134	81.946	0.34981	81.946	81.716	82.066	0					23	11	3	0	0	0	0.31747	1	19989	19989		5.7319	2.1354	1	157130			16207	7624	10694	10807	21898	21898					-0.05264028178703484
QDHWLPWL	8	Unmodified	_QDHWLPWL_					0	0	0		ENST00000445817.1_1_1:227618561-227618687:+|nuORF	ENST00000445817.1_1_1:227618561-227618687:+|nuORF	ENST00000445817.1_1_1:227618561-227618687:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.8436279296875	2	547.774534	1093.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.18	1	115.19	114.69	115.69	0.013092								0	0	0	0.38822	1	29288	29288		0.79363	0	1				16208	6540	10695	10808	21899	21899					-0.008511064913591326
QDLAQLPSP	9	Unmodified	_QDLAQLPSP_					0	0	0		ENST00000476971.5_1_X:133736110-133867533:-|nuORF	ENST00000476971.5_1_X:133736110-133867533:-|nuORF	ENST00000476971.5_1_X:133736110-133867533:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.75628662109375	2	484.756007	967.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.333	1	33.407	32.907	33.907	0.074322								0	0	0	0.28807	1	5168	5168		1.4819	0	1				16209	6720	10696	10809	21900	21900					0.01241177172244079
QDLELMGLPF	10	Unmodified	_QDLELMGLPF_					0	0	0		tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7930908203125	2	581.794275	1161.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.959	1	88.991	88.491	89.491	0.032257								0	0	0	0.33711	1	22027	22027		3.5965	0.60125	1				16210	13731	10697	10810	21901	21901					-0.000327673227957348
QDLEPFLFY	9	Unmodified	_QDLEPFLFY_					0	0	0		ENST00000369014.9_1_1:150595095-150595323:-|nuORF	ENST00000369014.9_1_1:150595095-150595323:-|nuORF	ENST00000369014.9_1_1:150595095-150595323:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2879028320312	2	586.28714	1170.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.835	1	28.913	28.413	29.413	0.078287								0	0	0	0.29233	1	3830	3830		0.6015	0	1				16211	6190	10698	10811	21902	21902					-0.018730964794258398
QDLGHTDFEI	10	Unmodified	_QDLGHTDFEI_					0	0	0		nc|ENSG00000028203|Q9HBM0-5|VEZT;ENST00000397792.8_1_12:95625312-95650394:+|nuORF;nc|ENSG00000028203|Q9HBM0-6|VEZT;ENST00000546398.5_1_12:95611596-95687545:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	nc|ENSG00000028203|Q9HBM0-5|VEZT	nc|ENSG00000028203|Q9HBM0-5|VEZT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.302734375	2	587.772385	1173.53022	0.51999	0.00030563	-1.3408	-0.0007881	-0.82084	-0.00048247	587.7716354496145	73.376	0.62921	73.428	73.123	73.752	0.052574					33	24	2	0	0	0	0.30517	1	17260	17260		20.415	2.2796	1	509820			16212	497	10699	10812	21903	21903					-0.049606604955670264
QDLIPRASL	9	Unmodified	_QDLIPRASL_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7930603027344	2	506.792924	1011.57129	0.047489	2.4067E-05	-0.40883	-0.00020719	-0.36134	-0.00018312	506.79273367850584	49.034	0.35731	49.111	48.981	49.338	0.076607					21	12	2	0	0	0	0.23216	1	9919	9919		14.838	1.7958	1	113210			16213	5656	10700	10813	21904	21904					0.06597145334569632
QDMNKIRF	8	Unmodified	_QDMNKIRF_					0	0	0			REV__ETS2|p.G5R|1|0.17|ENSG00000157557|chr21:38810047-38810047|G/A|missense_variant	REV__ETS2|p.G5R|1|0.17|ENSG00000157557|chr21:38810047-38810047|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7726440429688	2	526.271301	1050.52805	-0.30727	-0.00016171	0.7701	0.00040528	0.46283	0.00024357	526.7726759024846	21.559	0.39148	21.559	21.402	21.793	0					85	36	3	0	0	0	0.5411	1	1945	1945		0.6015	0	1	37219	+		16214	12652	10701	10814	21905	21905					0.004806322856438783
QDNDIFRFV	9	Unmodified	_QDNDIFRFV_					0	0	0			REV__ENSG00000135175|ENST00000257627|OCM2	REV__ENSG00000135175|ENST00000257627|OCM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.2695922851562	2	577.285463	1152.55637	0.19909	0.00011493	0.59386	0.00034283	0.79294	0.00045775	577.285931712868	51.876	0.62151	51.876	51.652	52.274	0					48	21	3	0	0	0	0.2125	1	10962	10962		17.113	4.8722	1	222690	+		16215	8917	10702	10815	21906	21906					-0.013803465334376597
QDNDIFRFV	9	Unmodified	_QDNDIFRFV_					0	0	0			REV__ENSG00000135175|ENST00000257627|OCM2	REV__ENSG00000135175|ENST00000257627|OCM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.2864379882812	2	577.285463	1152.55637	0.31819	0.00018369	0.55515	0.00032048	0.87334	0.00050417	577.2858162458051	51.828	0.58524	51.896	51.681	52.267	0.067169					34	20	3	0	0	0	0.2125	2	10801	10801;10820		17.113	4.8722	1	209600	+		16216	8917	10702	10815	21907;21908	21907					-0.013803465334376597
QDNYPLEFA	9	Unmodified	_QDNYPLEFA_					0	0	0		nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000114268|Q16877-3|PFKFB4	nc|ENSG00000114268|Q16877-3|PFKFB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2991943359375	2	548.750921	1095.48729	0.21853	0.00011992	-1.6034	-0.00087985	-1.3848	-0.00075993	548.7481192116478	89.744	0.45856	89.744	89.475	89.933	0					45	17	3	0	0	0	0.23598	1	22393	22393		15.847	1.9411	1	87006			16217	1832	10703	10816	21909	21909					-0.05663430552999671
QDPELLSVI	9	Unmodified	_QDPELLSVI_					0	0	0		nc|ENSG00000135127|Q6ZP65|BICDL1;ENSG00000135127|ENST00000548673|BICDL1	nc|ENSG00000135127|Q6ZP65|BICDL1	nc|ENSG00000135127|Q6ZP65|BICDL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2793884277344	2	507.279315	1012.54408	0.31633	0.00016047	0.12215	6.1966E-05	0.43848	0.00022243	507.2793038882382	75.711	0.51167	75.711	75.425	75.937	0					62	27	3	0	0	0	0.11198	2	18150	18150;18189		29.841	0	1	2446900			16218	2716	10704	10817	21910;21911	21910					0.03830617003529824
QDPELLSVI	9	Unmodified	_QDPELLSVI_					0	0	0		nc|ENSG00000135127|Q6ZP65|BICDL1;ENSG00000135127|ENST00000548673|BICDL1	nc|ENSG00000135127|Q6ZP65|BICDL1	nc|ENSG00000135127|Q6ZP65|BICDL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2794189453125	2	507.279315	1012.54408	0.3239	0.00016431	0.13724	6.9621E-05	0.46114	0.00023393	507.2791826067581	75.687	0.55293	75.731	75.412	75.965	0.044037					66	30	3	0	0	0	0.11198	2	17936	17936;18025		29.841	0	1	3016300			16219	2716	10704	10817	21912;21913	21912					0.03830617003529824
QDQVAAPF	8	Unmodified	_QDQVAAPF_					0	0	0		LTBP1|p.Q1575Hfs*14|1|0.26|ENSG00000049323|chr2:33389196-33389215|AGCTGTGTAACATCCCCGTG/-|frameshift_variant;ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1	LTBP1|p.Q1575Hfs*14|1|0.26|ENSG00000049323|chr2:33389196-33389215|AGCTGTGTAACATCCCCGTG/-|frameshift_variant	LTBP1|p.Q1575Hfs*14|1|0.26|ENSG00000049323|chr2:33389196-33389215|AGCTGTGTAACATCCCCGTG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.216796875	2	438.216517	874.418482	0.31197	0.00013671	-0.62949	-0.00027585	-0.31752	-0.00013914	438.2161955327646	51.323	0.58887	51.323	51.124	51.713	0					32	19	3	0	0	0	0.53026	1	10792	10792		7.9102	0	1	105790			16220	573	10705	10818	21914	21914					-0.02375050062050832
QDRGRDSNSDE	11	Unmodified	_QDRGRDSNSDE_					0	0	0		ENSG00000163395|ENST00000335211|IGFN1	ENSG00000163395|ENST00000335211|IGFN1	ENSG00000163395|ENST00000335211|IGFN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.2711791992188	2	639.768894	1277.52323	0.001875	1.1995E-06	0.048493	3.1024E-05	0.050368	3.2224E-05	639.7693198508484	34.393	0.12779	34.469	34.39	34.518	0.076244					6	5	2	0	0	0	0.31102	1	5467	5467		0	0	1	13617			16221	3898	10706	10819	21915	21915					-0.10442625114092152
QDRNANNH	8	Unmodified	_QDRNANNH_					0	0	0		nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7181396484375	2	484.718279	967.422004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.47	1	91.506	91.006	92.006	0.035446								0	0	0	0.38822	1	22792	22792		0	0	1				16222	537	10707	10820	21916	21916					-0.06300987235488265
QDSLHVSIT	9	Unmodified	_QDSLHVSIT_					0	0	0		nc|ENSG00000162946|Q9NRI5-11|DISC1;ENST00000602700.5_1_1:231830478-231954093:+|nuORF;nc|ENSG00000162946|Q9NRI5-7|DISC1;nc|ENSG00000162946|Q9NRI5-6|DISC1;nc|ENSG00000162946|Q9NRI5-9|DISC1;nc|ENSG00000162946|Q9NRI5-3|DISC1;nc|ENSG00000162946|Q9NRI5-8|DISC1;nc|ENSG00000162946|Q9NRI5-5|DISC1;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;nc|ENSG00000162946|Q9NRI5-2|DISC1;ENSG00000162946|ENST00000439617|DISC1	nc|ENSG00000162946|Q9NRI5-11|DISC1	nc|ENSG00000162946|Q9NRI5-11|DISC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.25860595703125	2	500.258914	998.503274	0.016103	8.0557E-06	-0.47913	-0.00023969	-0.46302	-0.00023163	500.2586976921026	43.779	0.23743	43.868	43.713	43.95	0.088924					14	8	2	0	0	0	0.26684	1	8287	8287		10.824	0	1	33864			16223	3866	10708	10821	21917	21917					0.003962756838859605
QDSLHVSIT	9	Unmodified	_QDSLHVSIT_					0	0	0		nc|ENSG00000162946|Q9NRI5-11|DISC1;ENST00000602700.5_1_1:231830478-231954093:+|nuORF;nc|ENSG00000162946|Q9NRI5-7|DISC1;nc|ENSG00000162946|Q9NRI5-6|DISC1;nc|ENSG00000162946|Q9NRI5-9|DISC1;nc|ENSG00000162946|Q9NRI5-3|DISC1;nc|ENSG00000162946|Q9NRI5-8|DISC1;nc|ENSG00000162946|Q9NRI5-5|DISC1;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;nc|ENSG00000162946|Q9NRI5-2|DISC1;ENSG00000162946|ENST00000439617|DISC1	nc|ENSG00000162946|Q9NRI5-11|DISC1	nc|ENSG00000162946|Q9NRI5-11|DISC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	500.258914	998.503274	-0.10346	-5.1758E-05	-0.71152	-0.00035594	-0.81498	-0.0004077	500.25867857218003	43.89	0.34282	43.89	43.691	44.034	0	0.011136	-9.2677E-05	NaN	10.824	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50591			16224	3866	10708	10821							0.003962756838859605
QDSTFAELW	9	Unmodified	_QDSTFAELW_					0	0	0		GRID1|p.R710W|1|0.47|ENSG00000182771|chr10:85647267-85647267|G/A|missense_variant;nc|ENSG00000182771|Q9ULK0-2|GRID1;GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant;ENSG00000182771|ENST00000327946|GRID1	GRID1|p.R710W|1|0.47|ENSG00000182771|chr10:85647267-85647267|G/A|missense_variant	GRID1|p.R710W|1|0.47|ENSG00000182771|chr10:85647267-85647267|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2498779296875	2	548.750921	1095.48729	-0.25156	-0.00013804	0.027997	1.5364E-05	-0.22356	-0.00012268	548.7512283679753	40.624	1.0915	40.624	40.341	41.433	0					77	38	3	0	0	0	0.3182	1	7663	7663		4.3292	0	1	230000			16225	4892	10709	10822	21918	21918					-0.05663430552999671
QDYHARSYF	9	Unmodified	_QDYHARSYF_					0	0	0		ENSG00000275489|ENST00000614158|C17orf98	ENSG00000275489|ENST00000614158|C17orf98	ENSG00000275489|ENST00000614158|C17orf98	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.3306274414062	2	593.767437	1185.52032	0.28684	0.00017032	2.3294	0.0013832	2.6163	0.0015535	593.7687002263656	82.1	0.30144	82.122	81.969	82.271	0.021866					18	10	2	0	0	0	0.25052	1	19907	19907		8.7454	3.5147	1	106900			16226	5748	10710	10823	21919	21919					-0.06501803710284548
QDYWLSLLF	9	Unmodified	_QDYWLSLLF_					0	0	0		nc|ENSG00000173083|Q9Y251-3|HPSE	nc|ENSG00000173083|Q9Y251-3|HPSE	nc|ENSG00000173083|Q9Y251-3|HPSE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.802490234375	2	592.802957	1183.59136	0.38126	0.00022601	-0.6065	-0.00035954	-0.22524	-0.00013352	592.8023743314087	76	1.8751	76	75.268	77.144	0					207	89	3	0	0	0	0.2546	1	18086	18086		12.241	2.1667	1	3505900			16227	7558	10711	10824	21920	21920					0.006908962745228564
QEAEAAQRL	9	Unmodified	_QEAEAAQRL_					0	0	0		ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB;ENST00000589308.1_1_19:36606815-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2619934082031	2	508.261988	1014.50942	-0.22283	-0.00011326	-0.38213	-0.00019422	-0.60496	-0.00030748	508.261772111233	26.573	0.42365	26.573	26.41	26.834	0					45	28	2	0	0	0	0.27929	1	3302	3302		9.3831	3.1773	1	44180			16228	1457	10712	10825	21921	21921					0.0027479391541191944
QEAEAAQRL	9	Unmodified	_QEAEAAQRL_					0	0	0		ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB;ENST00000589308.1_1_19:36606815-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	508.261988	1014.50942	-0.12197	-6.1995E-05	-0.39803	-0.0002023	-0.52	-0.0002643	508.26174652855866	26.495	0.40584	26.586	26.408	26.814	0.091507	0.0065304	-5.6803E-06	NaN	9.3831	52	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36133			16229	1457	10712	10825							0.0027479391541191944
QEAGIKTAF	9	Unmodified	_QEAGIKTAF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7584533691406	2	482.758549	963.502546	-0.46838	-0.00022611	-1.294	-0.00062469	-1.7624	-0.0008508	482.75884842369925	40.282	0.5668	40.282	40.123	40.69	0					41	19	3	0	0	0	0.32375	1	7383	7383		3.5965	0.60125	1	63257			16230	2382	10713	10826	21922	21922					0.01933481034848228
QEAVERSM	8	Unmodified	_QEAVERSM_					0	0	0			REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2239990234375	2	475.224017	948.43348	-0.53326	-0.00025342	0.077264	3.6718E-05	-0.45599	-0.0002167	475.2240179951587	21.794	2.7737	21.794	21.19	23.963	0					533	258	4	0	0	0	0.51967	2	1801	1801;2194		10.074	0.6908	1	487320	+		16231	8165	10714	10827	21923;21924	21923					-0.04279926256356248
QEAVERSM	8	Unmodified	_QEAVERSM_					0	0	0			REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2236633300781	2	475.224017	948.43348	-0.22082	-0.00010494	-0.14091	-6.6965E-05	-0.36173	-0.0001719	475.22385224388387	21.518	2.564	21.62	20.801	23.365	0.10178					529	258	3	0	0	0	0.53118	2	2110	1672;2110		7.2892	2.0586	1	395230	+		16232	8165	10714	10827	21925;21926	21926					-0.04279926256356248
QECDCDESHCG	11	Unmodified	_QECDCDESHCG_					0	0	0			REV__ENSG00000166930|ENST00000300190|MS4A5	REV__ENSG00000166930|ENST00000300190|MS4A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.1832885742188	2	613.181362	1224.34817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.256	1	13.256	12.756	13.756	0								0	0	0	0.34212	1	185	185		0	0	1		+		16233	10101	10715	10828	21927	21927					-0.2550282756665183
QECDCDESHCG	11	Unmodified	_QECDCDESHCG_					0	0	0			REV__ENSG00000166930|ENST00000300190|MS4A5	REV__ENSG00000166930|ENST00000300190|MS4A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.1810302734375	2	613.181362	1224.34817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.261	1	13.261	12.761	13.761	0								0	0	0	0.34212	1	187	187		0	0	1		+		16234	10101	10715	10828	21928	21928					-0.2550282756665183
QECDCDESHCG	11	Unmodified	_QECDCDESHCG_					0	0	0			REV__ENSG00000166930|ENST00000300190|MS4A5	REV__ENSG00000166930|ENST00000300190|MS4A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.179443359375	2	613.181362	1224.34817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.329	1	13.329	12.829	13.829	0								0	0	0	0.34212	1	197	197		0	0	1		+		16235	10101	10715	10828	21929	21929					-0.2550282756665183
QECDCDESHCG	11	Unmodified	_QECDCDESHCG_					0	0	0			REV__ENSG00000166930|ENST00000300190|MS4A5	REV__ENSG00000166930|ENST00000300190|MS4A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.1827392578125	2	613.181362	1224.34817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.421	1	13.421	12.921	13.921	0								0	0	0	0.34212	1	213	213		0	0	1		+		16236	10101	10715	10828	21930	21930					-0.2550282756665183
QECDCDESHCG	11	Unmodified	_QECDCDESHCG_					0	0	0			REV__ENSG00000166930|ENST00000300190|MS4A5	REV__ENSG00000166930|ENST00000300190|MS4A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.1814575195312	2	613.181362	1224.34817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.65	1	13.65	13.15	14.15	0								0	0	0	0.34212	1	248	248		0	0	1		+		16237	10101	10715	10828	21931	21931					-0.2550282756665183
QECDCDESHCG	11	Unmodified	_QECDCDESHCG_					0	0	0			REV__ENSG00000166930|ENST00000300190|MS4A5	REV__ENSG00000166930|ENST00000300190|MS4A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.1812133789062	2	613.181362	1224.34817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.935	1	13.935	13.435	14.435	0								0	0	0	0.34212	1	292	292		0	0	1		+		16238	10101	10715	10828	21932	21932					-0.2550282756665183
QEDAARLQAAY	11	Unmodified	_QEDAARLQAAY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3047485351562	2	618.304384	1234.59421	-0.49363	-0.00030522	0.26656	0.00016481	-0.22707	-0.0001404	618.3048384231765	39.696	0.45753	39.696	39.496	39.954	0					24	15	3	0	0	0	0.25966	1	7194	7194		22.658	10.417	1	50484			16239	1897	10716	10829	21933	21933					-0.0136988033864327
QEDAARLQAAY	11	Unmodified	_QEDAARLQAAY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	618.304384	1234.59421	-0.31321	-0.00019366	0.44965	0.00027802	0.13645	8.4366E-05	618.3046258455596	39.579	0.28058	39.668	39.557	39.837	0.088562	-0.013976	0.00011922	NaN	22.658	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31996			16240	1897	10716	10829							-0.0136988033864327
QEDLRTFSW	9	Unmodified	_QEDLRTFSW_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.2832641601562	2	591.28292	1180.55129	0.43405	0.00025665	0.070632	4.1764E-05	0.50469	0.00029841	591.2830336474461	61.119	0.56227	61.119	60.885	61.447	0					46	19	3	0	0	0	0.0034159	2	13686	13686;13736		107.1	53.267	1	493610			16241	3267	10717	10830	21934;21935	21934					-0.031766503960625414
QEDLRTFSW	9	Unmodified	_QEDLRTFSW_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.2828369140625	2	591.28292	1180.55129	0.34267	0.00020262	0.24813	0.00014672	0.59081	0.00034933	591.2830918613334	61.047	0.55589	61.121	60.879	61.435	0.073421					46	18	3	0	0	0	0.0040167	2	13518	13518;13559		103.42	53.486	1	624740			16242	3267	10717	10830	21936;21937	21936					-0.031766503960625414
QEDNESTNS	9	Unmodified	_QEDNESTNS_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.1965942382812	2	512.196707	1022.37886	0.21258	0.00010888	-1.9317	-0.0009894	-1.7191	-0.00088051	512.1956403539353	59.453	0.53493	59.453	59.249	59.784	0					57	21	4	0	0	0	0.33978	1	13169	13169		1.4819	0.68827	1	330040	+		16243	10677	10718	10831	21938	21938					-0.1314326659409062
QEDSSHRDLCV	11	Unmodified	_QEDSSHRDLCV_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.783203125	2	644.782958	1287.55136	0.1187	7.6535E-05	0.071643	4.6194E-05	0.19034	0.00012273	644.7831436175414	89.807	0.45419	89.807	89.562	90.017	0					43	17	4	0	0	0	0.36864	2	22415	22415;22466		10.151	0.76745	1	613540	+		16244	10445	10719	10832	21939;21940	21939					-0.08091018458367216
QEDSWKLL	8	Unmodified	_QEDSWKLL_					0	0	0			REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.73089599609375	2	509.763832	1017.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.323	1	55.323	54.823	55.823	0								0	0	0	0.38822	1	11936	11936		8.7454	1.6437	1		+		16245	7896	10720	10833	21941	21941					0.0050546368928507945
QEDWNKVL	8	Unmodified	_QEDWNKVL_					0	0	0		nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.9594116210938	2	516.261456	1030.50836	0.066839	3.4506E-05	-3.7985	-0.001961	-3.7316	-0.0019265	516.258520503022	44.907	0.1054	44.995	44.906	45.011	0.08754					5	3	2	0	0	0	0.3576	1	8639	8639		2.5775	0.27475	1	29698			16246	368	10721	10834	21942	21942					-0.005674204534898308
QEEDGPLK	8	Unmodified	_QEEDGPLK_					0	0	0		nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-4|TAF6	nc|ENSG00000106290|P49848-4|TAF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.22412109375	2	458.224539	914.434526	-0.032996	-1.5119E-05	0.32683	0.00014976	0.29384	0.00013464	458.22460088236636	28.395	1.0253	28.395	28.095	29.12	0					119	52	3	0	0	0	0.53614	1	3909	3909		3.9444	1.8846	1	731130			16247	1514	10722	10835	21943	21943					-0.0261138861579866
QEEVLRKFRA	10	Unmodified	_QEEVLRKFRA_					0	0	0		DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.5322265625	3	425.910449	1274.70952	0.21472	9.1453E-05	-0.03568	-1.5197E-05	0.17904	7.6257E-05	425.91027210657995	34.653	0.5517	34.653	34.45	35.002	0					31	20	2	0	0	0	0.31854	1	5774	5774		0.56317	0.40385	1	42627			16248	278	10723	10836	21944	21944					0.08315268583032775
QEFHLKRRR	9	Unmodified	_QEFHLKRRR_					0	0	0			REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.9085083007812	2	635.367987	1268.72142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.27	1	109.27	108.77	109.77	0								0	0	0	0.28527	1	28129	28129		2.0598	0.40713	1		+		16249	7884	10724	10837	21945	21945					0.09780930116858144
QEFHLSWIL	9	Unmodified	_QEFHLSWIL_					0	0	0		ENST00000401028.2_1_1:91794325-91794628:+|nuORF	ENST00000401028.2_1_1:91794325-91794628:+|nuORF	ENST00000401028.2_1_1:91794325-91794628:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8095703125	2	586.808574	1171.60259	0.50164	0.00029437	0.82292	0.0004829	1.3246	0.00077726	586.8089883710427	74.216	0.95456	74.216	74.006	74.961	0					60	35	2	0	0	0	0.047633	1	17815	17815		43.858	9.7559	1	1983200			16250	6366	10725	10838	21946	21946					0.02365718368673697
QEFPVQAR	8	Unmodified	_QEFPVQAR_					0	0	0			REV__ENSG00000185043|ENST00000328649|CIB1	REV__ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2698059082031	2	487.756341	973.498129	-0.255	-0.00012438	0.11215	5.4704E-05	-0.14285	-6.9676E-05	487.75636320063427	45.733	0.735	45.733	45.586	46.321	0					34	25	2	0	0	0	0.53026	1	9015	9015		7.9102	0.62092	1	68620	+		16251	10657	10726	10839	21947	21947					0.01032016611952713
QEGLDMQM	8	Unmodified	_QEGLDMQM_					0	0	0		PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant;nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1983947753906	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.641	1	39.641	39.141	40.141	0								0	0	0	0.38822	1	7185	7185		1.8442	0.36234	1				16252	2949	10727	10840	21948	21948					-0.09342377256666623
QEGLDMQM	8	Unmodified	_QEGLDMQM_					0	0	0		PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant;nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.19775390625	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.103	1	41.103	40.603	41.603	0								0	0	0	0.38822	1	7624	7624		4.3292	0.73274	1				16253	2949	10727	10840	21949	21949					-0.09342377256666623
QEHDIAIKFF	10	Unmodified	_QEHDIAIKFF_					0	0	0		ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.3260498046875	2	624.324588	1246.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.25	1	106.28	105.78	106.78	0.029739								0	0	0	0.33784	1	27197	27197		2.7352	0.23671	1				16254	6464	10728	10841	21950	21950					0.021170860517941037
QEHQGHQTF	9	Unmodified	_QEHQGHQTF_					0	0	0		nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22;ENST00000480395.5_1_11:5717822-5718591:+|nuORF;ENST00000460454.1_1_11:5717462-5717939:+|nuORF	nc|ENSG00000132274|Q8IYM9-2|TRIM22	nc|ENSG00000132274|Q8IYM9-2|TRIM22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2492065429688	2	556.249412	1110.48427	0.45065	0.00025067	-0.60973	-0.00033916	-0.15909	-8.8492E-05	556.2490419851395	17.374	0.34423	17.458	17.324	17.668	0.083696					92	41	3	0	0	0	0.2359	1	849	849		14.405	10.461	1	108090			16255	2560	10729	10842	21951	21951					-0.06655260887146142
QEHSPNQRL	9	Unmodified	_QEHSPNQRL_					0	0	0		nc|ENSG00000142556|Q8N883-2|ZNF614;ENSG00000142556|ENST00000270649|ZNF614	nc|ENSG00000142556|Q8N883-2|ZNF614	nc|ENSG00000142556|Q8N883-2|ZNF614	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7781982421875	2	554.778336	1107.54212	-0.20371	-0.00011301	0.054312	3.0131E-05	-0.1494	-8.2884E-05	554.7782646413035	18.34	0.57226	18.34	18.163	18.735	0					195	66	4	0	0	0	0.27929	1	1152	1152		9.3831	0	1	330720			16256	3111	10730	10843	21952	21952					-0.007349989617068786
QEIKVADVI	9	Unmodified	_QEIKVADVI_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7955017089844	2	507.795132	1013.57571	0.24871	0.00012629	-0.013419	-6.8139E-06	0.23529	0.00011948	507.7950106931451	74.238	0.43715	74.238	74.118	74.555	0					26	15	2	0	0	0	0.19307	1	17725	17725		19.362	1.9193	1	126440	+		16257	8042	10731	10844	21953	21953					0.06946609757460465
QEIKVADVI	9	Unmodified	_QEIKVADVI_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	507.795132	1013.57571	0.24871	0.00012629	-0.013419	-6.8139E-06	0.23529	0.00011948	507.7950106931451	74.238	0.43715	74.238	74.118	74.555	0	0.013847	6.6268E-05	NaN	19.362	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126440	+		16258	8042	10731	10844							0.06946609757460465
QEKDKQTDAF	10	Unmodified	_QEKDKQTDAF_					0	0	0			REV__nc|ENSG00000149187|Q92879-5|CELF1	REV__nc|ENSG00000149187|Q92879-5|CELF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.8694763183594	3	403.863053	1208.56733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.126	1	46.212	45.712	46.712	0.085617								0	0	0	0.33528	1	9015	9015		3.0723	0.81953	1		+		16259	8044	10732	10845	21954	21954					-0.028609889498056873
QEKTEVER	8	Unmodified	_QEKTEVER_					0	0	0		ENSG00000174652|ENST00000592904|ZNF266;ENST00000588933.5_1_19:9529772-9530765:-|nuORF	ENSG00000174652|ENST00000592904|ZNF266	ENSG00000174652|ENST00000592904|ZNF266	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7617492675781	2	509.76182	1017.50909	-0.22407	-0.00011422	-0.15504	-7.9034E-05	-0.37911	-0.00019326	509.7616866742452	25.484	0.37784	25.484	25.311	25.689	0					49	28	2	0	0	0	0.53926	1	3010	3010		1.8442	0	1	54167			16260	4594	10733	10846	21955	21955					0.0010337419556663008
QELEGMRS	8	Unmodified	_QELEGMRS_					0	0	0		TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2234802246094	2	475.224017	948.43348	-0.22082	-0.00010494	-0.14091	-6.6965E-05	-0.36173	-0.0001719	475.22385224388387	21.518	2.564	21.62	20.801	23.365	0.10178					529	258	3	0	0	0	0.53202	1	2077	2077		6.7232	0	1	395230			16261	547	10734	10847	21956	21956					-0.04279926256356248
QELFALLLS	9	Unmodified	_QELFALLLS_					0	0	0			REV__ENST00000533146.5_1_15:40979267-40987285:-|nuORF	REV__ENST00000533146.5_1_15:40979267-40987285:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.7700805664062	2	517.30005	1032.58555	0.47913	0.00024786	-0.253	-0.00013088	0.22613	0.00011698	517.2997630663185	94.121	0.36493	94.121	94.006	94.371	0					39	18	3	0	0	0	0.21622	1	23830	23830		21.537	0	1	453240	+		16262	12365	10735	10848	21957	21957					0.07055797762859584
QELLQTEL	8	Unmodified	_QELLQTEL_					0	0	0			REV__ENST00000555337.5_1_14:58675802-58697175:+|nuORF	REV__ENST00000555337.5_1_14:58675802-58697175:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.263427734375	2	487.263665	972.512776	0.21491	0.00010472	0.21241	0.0001035	0.42732	0.00020822	487.2636463518403	62.831	0.73061	62.904	62.659	63.39	0.072697					59	30	3	0	0	0	0.32977	1	14167	14167		32.305	0	1	683450	+		16263	12458	10736	10849	21958	21958					0.025420439694244124
QELNDRFANY	10	Unmodified	_QELNDRFANY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.79833984375	2	635.296559	1268.57856	-0.24883	-0.00015808	0.22604	0.0001436	-0.022791	-1.4479E-05	635.2966366713486	45.734	0.47947	45.734	45.53	46.009	0					38	16	3	0	0	0	0.093146	2	9000	9000;9045		46.022	32.98	1	206600			16264	494	10737	10850	21959;21960	21959					-0.04498166855637464
QELNDRFANY	10	Unmodified	_QELNDRFANY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.2974243164062	2	635.296559	1268.57856	0.025995	1.6514E-05	0.47299	0.00030049	0.49899	0.00031701	635.2969242466638	45.625	0.63448	45.711	45.525	46.159	0.085617					45	24	3	0	0	0	0.28859	2	8851	8851;8893		23.79	10.747	1	181760			16265	494	10737	10850	21961;21962	21961					-0.04498166855637464
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.3353271484375	2	646.335684	1290.65681	0.38333	0.00024776	0.1103	7.1293E-05	0.49364	0.00031906	646.3356005569043	47.28	0.49699	47.28	47.087	47.583	0					36	16	3	0	0	0	0.024374	1	9495	9495		81.915	46.983	1	247100			16266	4887	10738	10851	21963	21963					0.023112657295769168
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	646.336181640625	2	646.335684	1290.65681	0.26386	0.00017054	-0.088777	-5.738E-05	0.17508	0.00011316	646.3357358493827	47.176	0.46491	47.259	47.095	47.56	0.083096					35	17	3	0	0	0	0.19061	1	9339	9339		46.022	26.765	1	219300			16267	4887	10738	10851	21964	21964					0.023112657295769168
QELSRAKR	8	Unmodified	_QELSRAKR_					0	0	0			REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2883605957031	2	494.28834	986.562127	0.21767	0.00010759	-0.48045	-0.00023748	-0.26278	-0.00012989	494.28809412892593	19.594	0.22324	19.689	19.576	19.799	0.095232					43	26	2	0	0	0	0.53858	1	1318	1318		2.3027	0	1	30205	+		16268	8166	10739	10852	21965	21965					0.06830796768895198
QELSRAKR	8	Unmodified	_QELSRAKR_					0	0	0			REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	494.28834	986.562127	-0.20269	-0.00010019	-0.21528	-0.00010641	-0.41798	-0.0002066	494.2882249217024	19.691	0.25044	19.691	19.539	19.79	0	0.00087853	0.00014655	NaN	2.3027	47	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31358	+		16269	8166	10739	10852							0.06830796768895198
QEMMLKKRVF	10	Unmodified	_QEMMLKKRVF_					0	0	0			REV__ENST00000480127.1_1_10:105815115-105815723:-|nuORF	REV__ENST00000480127.1_1_10:105815115-105815723:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2347412109375	3	437.242154	1308.70463	-0.097783	-4.2755E-05	3.427	0.0014984	3.3293	0.0014557	437.24353510641646	44.891	0.2373	44.979	44.879	45.117	0.08754					11	8	2	0	0	0	0.45632	1	8664	8664		3.5871	0.26742	1	29560	+		16270	7774	10740	10853	21966	21966					0.062629251243834
QEPARAPAL	9	Unmodified	_QEPARAPAL_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7645568847656	2	476.764166	951.513779	-0.36896	-0.00017591	0.8207	0.00039128	0.45174	0.00021537	476.76462584187095	32.258	0.41939	32.258	32.107	32.526	0					31	16	3	0	0	0	0.29576	2	4974	4952;4974		7.2892	0.73274	1	42504	+		16271	10126	10741	10854	21967;21968	21968					0.036083031289877
QEPARAPAL	9	Unmodified	_QEPARAPAL_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2567443847656	2	476.764166	951.513779	-0.36896	-0.00017591	0.8207	0.00039128	0.45174	0.00021537	476.76462584187095	32.258	0.41939	32.258	32.107	32.526	0					31	16	3	0	0	0	0.25579	1	4952	4952		4.3292	0.73274	1	42504	+		16272	10126	10741	10854	21969	21969					0.036083031289877
QEPARAPAL	9	Unmodified	_QEPARAPAL_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.25616455078125	2	476.764166	951.513779	-0.33763	-0.00016097	0.96089	0.00045812	0.62326	0.00029715	476.7645602949867	32.219	0.40737	32.293	32.127	32.534	0.07378					35	19	3	0	0	0	0.3354	1	4820	4820		2.0598	0	1	37429	+		16273	10126	10741	10854	21970	21970					0.036083031289877
QEQDLLEQL	9	Unmodified	_QEQDLLEQL_					0	0	0			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7670288085938	2	558.282586	1114.55062	0.71377	0.00039849	-3.0184	-0.0016851	-2.3046	-0.0012866	558.2804898605882	81.242	0.34116	81.264	81.134	81.475	0.021866					23	11	3	0	0	0	0.18398	1	19715	19715		20.415	0	1	107420	+		16274	11147	10742	10855	21971	21971					-0.0020748983574776503
QEQEIEQRL	9	Unmodified	_QEQEIEQRL_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7987670898438	2	586.798934	1171.58332	0.44124	0.00025892	-0.3085	-0.00018103	0.13274	7.7893E-05	586.7986235108111	36.899	0.33515	36.899	36.751	37.086	0					23	12	2	0	0	0	0.29334	1	6365	6365		7.609	4.3276	1	39586			16275	3173	10743	10856	21972	21972					0.004387172871020084
QEQEIEQRL	9	Unmodified	_QEQEIEQRL_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7991333007812	2	586.798934	1171.58332	0.59935	0.0003517	-0.27758	-0.00016288	0.32177	0.00018881	586.798722926524	36.828	0.30465	36.91	36.765	37.07	0.081715					19	12	2	0	0	0	0.28919	1	6211	6211		8.1555	4.2111	1	40226			16276	3173	10743	10856	21973	21973					0.004387172871020084
QEQLHSVPL	9	Unmodified	_QEQLHSVPL_					0	0	0		EGFLAM|p.R92L|1|0.34|ENSG00000164318|chr5:38338765-38338765|G/T|missense_variant;ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM	EGFLAM|p.R92L|1|0.34|ENSG00000164318|chr5:38338765-38338765|G/T|missense_variant	EGFLAM|p.R92L|1|0.34|ENSG00000164318|chr5:38338765-38338765|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7655639648438	2	525.782556	1049.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.855	1	23.954	23.454	24.454	0.099739								0	0	0	0.28073	1	2403	2403		2.9952	0.93549	1				16277	310	10744	10857	21974	21974					0.027765549549030766
QEQLLKEGF	9	Unmodified	_QEQLLKEGF_					0	0	0		ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2907104492188	2	546.290214	1090.56587	0.21941	0.00011986	-0.72222	-0.00039454	-0.50281	-0.00027468	546.2901652655436	49.943	0.5013	49.943	49.733	50.234	0					31	17	3	0	0	0	0.11198	1	10306	10306		29.841	9.426	1	158060			16278	1994	10745	10858	21975	21975					0.024214217521148385
QEQLLKEGF	9	Unmodified	_QEQLLKEGF_					0	0	0		ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7572021484375	2	546.290214	1090.56587	0.24491	0.00013379	-0.38565	-0.00021068	-0.14074	-7.6885E-05	546.2901329527963	49.875	0.41974	49.948	49.791	50.211	0.07312					22	14	2	0	0	0	0.24533	1	10118	10118		8.1555	2.8586	1	134020			16279	1994	10745	10858	21976	21976					0.024214217521148385
QERLTRTF	8	Unmodified	_QERLTRTF_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.795166015625	2	525.788173	1049.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.816	1	48.893	48.393	49.393	0.076607								0	0	0	0.38652	1	9824	9824		16.942	0	1				16280	2402	10746	10859	21977	21977					0.038993770490378665
QERYPRPR	8	Unmodified	_QERYPRPR_					0	0	0			REV__ENST00000261402.6_1_12:106533091-106533277:-|nuORF	REV__ENST00000261402.6_1_12:106533091-106533277:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2988891601562	2	551.299239	1100.58392	-0.28358	-0.00015634	-1.0034	-0.00055319	-1.287	-0.00070953	551.2986588830665	17.064	0.29264	17.064	16.953	17.245	0					60	35	3	0	0	0	0.54097	1	844	844		0.69038	0	1	28472	+		16281	11231	10747	10860	21978	21978					0.03765601517466166
QESFAEHRSGL	11	Unmodified	_QESFAEHRSGL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000449864.5_3_2:242206025-242206308:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.8043823242188	2	630.802008	1259.58946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.435	1	48.515	48.015	49.015	0.080029								0	0	0	0.33939	1	9708	9708		0.96228	0.43751	1				16282	1919	10748	10861	21979	21979					-0.029947644813773877
QETAVTQTY	9	Unmodified	_QETAVTQTY_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.748291015625	2	520.748379	1039.4822	0.2946	0.00015341	0.77226	0.00040215	1.0669	0.00055556	520.7482408545176	37.52	0.7698	37.52	37.219	37.988	0					67	24	4	0	0	0	0.088609	1	6558	6558		34.932	5.0915	1	237400			16283	1902	10749	10862	21980	21980					-0.03595734415603147
QETGYFLLF	9	Unmodified	_QETGYFLLF_					0	0	0		ENST00000331920.10_1_9:98231408-98238427:-|nuORF	ENST00000331920.10_1_9:98231408-98238427:-|nuORF	ENST00000331920.10_1_9:98231408-98238427:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2824096679688	2	559.281857	1116.54916	0.24793	0.00013866	1.3043	0.00072945	1.5522	0.00086811	559.2826919734003	86.417	0.50347	86.417	86.179	86.683	0					45	18	3	0	0	0	0.021119	1	21393	21393		57.471	5.203	1	651330			16284	6059	10750	10863	21981	21981					-0.004450791338740601
QETINNEWFK	10	Unmodified	_QETINNEWFK_					0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.21514892578125	3	436.878815	1307.61462	0.59725	0.00026093	2.1795	0.00095219	2.7768	0.0012131	437.2145583291042	83.059	0.97567	83.059	82.509	83.485	0					47	33	2	0	0	0	0.46608	1	20349	20349		1.7423	0.41263	1	119570			16285	13596	10751	10864	21982	21982					-0.026887096788414055
QETSFTKEAY	10	Unmodified	_QETSFTKEAY_					0	0	0		TPT1-KRT17|1|fusion;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1	TPT1-KRT17|1|fusion	TPT1-KRT17|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2802124023438	2	602.280043	1202.54553	0.32016	0.00019283	0.09846	5.93E-05	0.41862	0.00025213	602.2800101947751	36.271	0.87052	36.271	36.047	36.917	0					78	32	4	0	0	0	0.086038	3	6179	6134;6179;6226		47.732	22.741	1	292730		+	16286	13439	10752	10865	21983;21984;21985	21984					-0.04763793698361951
QETSFTKEAY	10	Unmodified	_QETSFTKEAY_					0	0	0		TPT1-KRT17|1|fusion;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1	TPT1-KRT17|1|fusion	TPT1-KRT17|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2802734375	2	602.280043	1202.54553	0.36922	0.00022237	0.1275	7.6792E-05	0.49672	0.00029917	602.2800979063878	36.201	0.67791	36.283	36.112	36.79	0.081711					65	27	4	0	0	0	0.11085	2	6040	5997;6040		43.982	24.725	1	242750		+	16287	13439	10752	10865	21986;21987	21987					-0.04763793698361951
QEVDASIFKAW	11	Unmodified	_QEVDASIFKAW_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.3276977539062	2	647.327328	1292.6401	0.49288	0.00031906	-0.95876	-0.00062063	-0.46588	-0.00030157	647.3265172708093	69.745	0.41653	69.745	69.574	69.991	0					22	13	2	0	0	0	0.24029	1	16331	16331		24.882	9.6331	1	144000			16288	3036	10753	10866	21988	21988					0.005487648436201198
QEVDASIFKAW	11	Unmodified	_QEVDASIFKAW_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	647.327328	1292.6401	0.20772	0.00013446	-0.94809	-0.00061372	-0.74036	-0.00047926	647.3264326790367	69.652	0.38597	69.713	69.61	69.996	0.060562	-0.015978	7.9106E-06	NaN	24.882	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143070			16289	3036	10753	10866							0.005487648436201198
QEVFKFAVRV	10	Unmodified	_QEVFKFAVRV_					0	0	0		tr|U7T2U6|U7T2U6_FUSNUBeta-ketoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabHPE=3SV=1	tr|U7T2U6|U7T2U6_FUSNUBeta-ketoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabHPE=3SV=1	tr|U7T2U6|U7T2U6_FUSNUBeta-ketoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabHPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.5688171386719	3	408.236274	1221.68699	-0.18314	-7.4763E-05	-2.3285	-0.00095056	-2.5116	-0.0010253	408.56917637181044	33.574	0.3652	33.648	33.479	33.845	0.074322					18	14	2	0	0	0	0.47119	1	5248	5248		0.77653	0.078866	1	16551			16290	13699	10754	10867	21989	21989					0.08501669185397986
QEVFRFAYY	9	Unmodified	_QEVFRFAYY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.7991943359375	2	611.798206	1221.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.434	1	64.434	63.934	64.934	0								0	0	0	0.14119	1	14712	14712		26.884	5.137	1				16291	1996	10755	10868	21990	21990					-0.020068720109975402
QEVLPFIYR	9	Unmodified	_QEVLPFIYR_					0	0	0		ENST00000511208.2_1_5:31532460-31535865:+|nuORF;ENST00000515409.5_1_5:31532460-31534525:+|nuORF;ENSG00000082213|ENST00000325366|C5orf22	ENST00000511208.2_1_5:31532460-31535865:+|nuORF	ENST00000511208.2_1_5:31532460-31535865:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8231811523438	2	582.824224	1163.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.655	1	30.655	30.155	31.155	0								0	0	0	0.29303	1	4491	4491		0.45834	0	1				16292	918	10756	10869	21991	21991					0.058622914027409934
QEYDFSRLA	9	Unmodified	_QEYDFSRLA_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2396240234375	2	564.769645	1127.52474	0.13469	7.6069E-05	1.1198	0.00063245	1.2545	0.00070852	564.7692539804192	51.866	0.80588	51.866	51.652	52.458	0					66	27	4	0	0	0	0.25281	1	10831	10831		6.7232	1.4263	1	513270	+		16293	9321	10757	10870	21992	21992					-0.03392339287370305
QEYPDLIHIY	10	Unmodified	_QEYPDLIHIY_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.8220825195312	2	645.821878	1289.6292	0.45297	0.00029254	0.35041	0.0002263	0.80338	0.00051884	645.8218016448991	69.037	0.24409	69.037	68.888	69.132	0					19	8	4	0	0	0	0.37232	1	16098	16098		14.838	9.9413	1	127420			16294	5023	10758	10871	21993	21993					-0.004026375306693808
QEYPDLIHIY	10	Unmodified	_QEYPDLIHIY_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	645.821878	1289.6292	0.11423	7.3771E-05	-0.43211	-0.00027907	-0.31788	-0.0002053	646.3228271333414	69.011	0.25545	69.074	68.852	69.108	0.062126	0.018258	-0.00074691	NaN	14.838	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167440			16295	5023	10758	10871							-0.004026375306693808
QFACGGWL	8	Unmodified	_QFACGGWL_					0	0	0		nc|ENSG00000142606|Q495T6-2|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1;ENSG00000142606|ENST00000378412|MMEL1	nc|ENSG00000142606|Q495T6-2|MMEL1	nc|ENSG00000142606|Q495T6-2|MMEL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2974853515625	2	441.202356	880.390159	0.47649	0.00021023	1.4787	0.00065239	1.9552	0.00086262	441.20277954184087	38.287	0.49104	38.287	38.076	38.567	0					26	16	2	0	0	0	0.3576	1	6840	6840		0.79363	0	1	21585			16296	3112	10759	10872	21994	21994					-0.054820712429773266
QFCMFEYPL	9	Unmodified	_QFCMFEYPL_					0	0	0		ENST00000561721.6_1_17:75089357-75138808:+|nuORF	ENST00000561721.6_1_17:75089357-75138808:+|nuORF	ENST00000561721.6_1_17:75089357-75138808:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2561645507812	2	589.256471	1176.49839	0.52325	0.00030833	-1.5466	-0.00091136	-1.0234	-0.00060303	589.2558862969568	47.249	1.1218	47.249	46.789	47.911	0					81	38	4	0	0	0	0.19398	1	9458	9458		19.257	4.6753	1	521080			16297	7159	10760	10873	21995	21995					-0.08280067774694544
QFCMFEYPL	9	Unmodified	_QFCMFEYPL_					0	0	0		ENST00000561721.6_1_17:75089357-75138808:+|nuORF	ENST00000561721.6_1_17:75089357-75138808:+|nuORF	ENST00000561721.6_1_17:75089357-75138808:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2557373046875	2	589.256471	1176.49839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.862	1	46.862	46.362	47.362	0								0	0	0	0.24643	1	9366	9366		10.074	0	1				16298	7159	10760	10873	21996	21996					-0.08280067774694544
QFCMFEYPL	9	Unmodified	_QFCMFEYPL_					0	0	0		ENST00000561721.6_1_17:75089357-75138808:+|nuORF	ENST00000561721.6_1_17:75089357-75138808:+|nuORF	ENST00000561721.6_1_17:75089357-75138808:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2567749023438	2	589.256471	1176.49839	0.47885	0.00028216	-0.95508	-0.00056279	-0.47623	-0.00028062	589.2561384874008	46.869	0.33305	46.952	46.762	47.095	0.083092					35	12	4	0	0	0	0.19398	1	9216	9216		19.257	4.6753	1	355590			16299	7159	10760	10873	21997	21997					-0.08280067774694544
QFCMFEYPL	9	Unmodified	_QFCMFEYPL_					0	0	0		ENST00000561721.6_1_17:75089357-75138808:+|nuORF	ENST00000561721.6_1_17:75089357-75138808:+|nuORF	ENST00000561721.6_1_17:75089357-75138808:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2562866210938	2	589.256471	1176.49839	0.59556	0.00035094	-1.1697	-0.00068924	-0.57412	-0.0003383	589.2559267962991	47.162	0.66959	47.245	47.06	47.729	0.083096					64	26	3	0	0	0	0.24021	1	9309	9309		13.906	4.5586	1	434570			16300	7159	10760	10873	21998	21998					-0.08280067774694544
QFDVATHL	8	Unmodified	_QFDVATHL_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.73724365234375	2	465.737617	929.460681	0.17126	7.9762E-05	0.86771	0.00040412	1.039	0.00048389	465.73824609223976	50.867	0.74178	50.867	50.707	51.448	0					44	24	3	0	0	0	0.30669	1	10565	10565		34.102	12.356	1	269570			16301	4926	10761	10874	21999	21999					-0.006870746536719707
QFDVATHL	8	Unmodified	_QFDVATHL_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7368469238281	2	465.737617	929.460681	0.081384	3.7904E-05	-0.2743	-0.00012775	-0.19291	-8.9846E-05	465.73741977265445	50.796	0.4648	50.866	50.666	51.131	0.069878					34	17	3	0	0	0	0.20402	1	10406	10406		42.095	13.608	1	187930			16302	4926	10761	10874	22000	22000					-0.006870746536719707
QFHRCEDAQM	10	Unmodified	_QFHRCEDAQM_					0	0	0			REV__ENST00000311028.4_1_8:102699264-102699300:-|nuORF	REV__ENST00000311028.4_1_8:102699264-102699300:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.78515625	2	632.763514	1263.51248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.458	1	66.458	65.958	66.958	0								0	0	0	0.33738	1	15330	15330		3.2813	0.54611	1		+		16303	11371	10762	10875	22001	22001					-0.10874022293728558
QFIQFKEAK	9	Unmodified	_QFIQFKEAK_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B	REV__nc|ENSG00000089177|Q96L93-6|KIF16B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.80615234375	2	569.816399	1137.61824	0.45288	0.00025806	-0.065602	-3.7381E-05	0.38728	0.00022068	569.8163274389955	81.453	0.5627	81.475	81.255	81.818	0.021866					44	20	3	0	0	0	0.28472	1	19708	19708		8.7454	0.83525	1	236340	+		16304	8294	10763	10876	22002	22002					0.05494004885713366
QFIRFPADE	9	Unmodified	_QFIRFPADE_					0	0	0		ENSG00000180423|ENST00000326737|HARBI1	ENSG00000180423|ENST00000326737|HARBI1	ENSG00000180423|ENST00000326737|HARBI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7837524414062	2	561.782556	1121.55056	0.64	0.00035954	0.76423	0.00042933	1.4042	0.00078887	561.7830178037251	54.465	1.4249	54.465	53.987	55.411	0					119	57	3	0	0	0	0.27332	1	11805	11805		10.074	3.8681	1	334230			16305	4807	10764	10877	22003	22003					-0.005354450451250159
QFKTAYGMKD	10	Unmodified	_QFKTAYGMKD_					0	0	0		ENST00000477786.5_1_20:50705508-50792496:-|nuORF;nc|ENSG00000020256|Q9NTW7-3|ZFP64;nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64	ENST00000477786.5_1_20:50705508-50792496:-|nuORF	ENST00000477786.5_1_20:50705508-50792496:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.251220703125	2	594.789524	1187.56449	0.1915	0.0001139	-1.8819	-0.0011194	-1.6904	-0.0010055	595.2896540978289	86.411	0.30126	86.436	86.327	86.628	0.025169					17	12	2	0	0	0	0.31496	1	21286	21286		13.906	2.2658	1	83395			16306	474	10765	10878	22004	22004					-0.02178535608322818
QFLGQMCLEF	10	Unmodified	_QFLGQMCLEF_					0	0	0			REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.85614013671875	3	405.856077	1214.5464	0.65726	0.00026675	-0.49663	-0.00020156	0.16062	6.5191E-05	405.8558138762279	55.639	0.73617	55.639	55.38	56.116	0					67	25	4	0	0	0	0.36006	1	12029	12029		10.315	0	1	498220	+		16307	12456	10766	10879	22005	22005					-0.05228993854689179
QFLLFTERF	9	Unmodified	_QFLLFTERF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2747802734375	2	600.824224	1199.63389	0.46199	0.00027757	-0.65266	-0.00039214	-0.19068	-0.00011456	600.8240975301112	76.915	0.35811	76.954	76.734	77.092	0.03923					26	12	3	0	0	0	0.15837	1	18380	18380		34.932	14.478	1	141460			16308	2010	10767	10880	22006	22006					0.04206291402738316
QFLLFTERF	9	Unmodified	_QFLLFTERF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	600.824224	1199.63389	0.39933	0.00023993	-0.34591	-0.00020783	0.053425	3.2099E-05	600.8238223019218	76.922	0.32997	76.922	76.756	77.086	0	-0.01595	7.4705E-05	NaN	34.932	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162230			16309	2010	10767	10880							0.04206291402738316
QFLSRLFLF	9	Unmodified	_QFLSRLFLF_					0	0	0		ENSG00000138942|ENST00000326132|RNF185;nc|ENSG00000138942|Q96GF1-2|RNF185	ENSG00000138942|ENST00000326132|RNF185	ENSG00000138942|ENST00000326132|RNF185	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134765625	2	585.837134	1169.65972	0.49048	0.00028734	-0.90395	-0.00052957	-0.41347	-0.00024223	585.8365155943595	86.168	0.33144	86.168	85.931	86.263	0					23	12	2	0	0	0	0.064501	1	21307	21307		56.177	0	1	404790			16310	2945	10768	10881	22007	22007					0.08167185645015707
QFLVMVLKC	9	Unmodified	_QFLVMVLKC_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2855834960938	2	540.800848	1079.58714	0.35557	0.00019229	-1.0639	-0.00057537	-0.70835	-0.00038308	540.8002697544813	37.914	0.42483	37.914	37.758	38.182	0					17	14	2	0	0	0	0.33704	1	6696	6696		1.8442	0	1	37388	+		16311	8225	10769	10882	22008	22008					0.050533922556041944
QFLVMVLKC	9	Unmodified	_QFLVMVLKC_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	540.800848	1079.58714	0.35557	0.00019229	-1.0639	-0.00057537	-0.70835	-0.00038308	540.8002697544813	37.914	0.42483	37.914	37.758	38.182	0	0.019297	6.9154E-05	NaN	1.8442	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37388	+		16312	8225	10769	10882							0.050533922556041944
QFLVMVLKC	9	Unmodified	_QFLVMVLKC_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	540.800848	1079.58714	0.4452	0.00024077	-1.1838	-0.00064018	-0.73856	-0.00039942	540.8001657057301	37.791	0.30011	37.875	37.744	38.044	0.084476	-0.019297	-6.0467E-05	NaN	1.8442	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19838	+		16313	8225	10769	10882							0.050533922556041944
QFLYYFDYAQ	10	Unmodified	_QFLYYFDYAQ_					0	0	0			REV__ENSG00000139131|ENST00000324868|YARS2	REV__ENSG00000139131|ENST00000324868|YARS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.75555419921875	3	453.208161	1356.60265	0.37461	0.00016978	0.52444	0.00023768	0.89905	0.00040746	453.20851486917337	48.161	0.95618	48.161	47.961	48.917	0					39	32	2	0	0	0	0.3184	1	9960	9960		1.7423	0	1	71268	+		16314	9332	10770	10883	22009	22009					-0.06138326422001228
QFLYYFDYAQ	10	Unmodified	_QFLYYFDYAQ_					0	0	0			REV__ENSG00000139131|ENST00000324868|YARS2	REV__ENSG00000139131|ENST00000324868|YARS2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	453.208161	1356.60265	0.3428	0.00015536	1.6548	0.00074996	1.9976	0.00090532	453.20858678921024	48.074	0.55502	48.154	47.948	48.503	0.080032	-0.003435	0.0012049	NaN	1.7423	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104680	+		16315	9332	10770	10883							-0.06138326422001228
QFPEGLFYEF	10	Unmodified	_QFPEGLFYEF_					0	0	0		ENSG00000256671|ENST00000632897|LIMS4;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1	ENSG00000256671|ENST00000632897|LIMS4	ENSG00000256671|ENST00000632897|LIMS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.7677612304688	2	638.797872	1275.58119	0.27555	0.00017602	-0.064143	-4.0974E-05	0.21141	0.00013505	639.2993134237083	96.084	0.19414	96.123	96.005	96.199	0.039772					13	9	2	0	0	0	0.43771	1	24204	24204		7.1017	1.3699	1	36721			16316	4354	10771	10884	22010	22010					-0.04557711450706847
QFQLIHEE	8	Unmodified	_QFQLIHEE_					0	0	0		ENST00000522166.1_1_8:57125296-57125371:+|nuORF	ENST00000522166.1_1_8:57125296-57125371:+|nuORF	ENST00000522166.1_1_8:57125296-57125371:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7952270507812	2	522.261456	1042.50836	-0.12096	-6.3175E-05	0.5965	0.00031153	0.47554	0.00024835	522.2617535815579	32.658	0.11483	32.732	32.637	32.752	0.07378					6	5	2	0	0	0	0.3576	1	4937	4937		3.9444	1.6417	1	13352			16317	6966	10772	10885	22011	22011					-0.011194204534604069
QFQQLLVR	8	Unmodified	_QFQQLLVR_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3034057617188	2	516.303458	1030.59236	-0.2869	-0.00014813	0.1456	7.5173E-05	-0.1413	-7.2952E-05	516.3034455133389	40.755	1.1034	40.755	40.505	41.609	0					87	39	4	0	0	0	0.53494	1	7631	7631		4.756	0	1	587980	+		16318	10306	10773	10886	22012	22012					0.07829155434092172
QFRHTPTTL	9	Unmodified	_QFRHTPTTL_					0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2843627929688	2	550.795998	1099.57744	0.46423	0.0002557	-0.052644	-2.8996E-05	0.41159	0.0002267	550.7959320504665	37.872	1.3535	37.956	37.684	39.038	0.084476					140	49	4	0	0	0	0.3182	1	6775	6775		4.3292	0.73274	1	719760	+		16319	10631	10774	10887	22013	22013					0.03163663566078867
QFRIKLFWFI	10	Unmodified	_QFRIKLFWFI_					0	0	0			REV__ENST00000005257.6_1_7:39746581-39746692:+|nuORF	REV__ENST00000005257.6_1_7:39746581-39746692:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.6081237792969	3	466.607931	1396.80196	0.25102	0.00011713	0.1118	5.2168E-05	0.36282	0.0001693	466.60791228553444	95.53	2.2158	95.53	94.656	96.872	0					277	101	3	0	0	0	0.47161	1	24406	24406		0.69767	0.69767	1	1459000	+		16320	11158	10775	10888	22014	22014					0.11943398387211346
QFRIKLFWFI	10	Unmodified	_QFRIKLFWFI_					0	0	0			REV__ENST00000005257.6_1_7:39746581-39746692:+|nuORF	REV__ENST00000005257.6_1_7:39746581-39746692:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.6077575683594	3	466.607931	1396.80196	0.061154	2.8535E-05	0.39648	0.000185	0.45764	0.00021354	466.608012015437	95.509	2.0294	95.548	94.792	96.822	0.038872					262	98	4	0	0	0	0.46521	1	24304	24304		1.9064	0.45126	1	1181700	+		16321	11158	10775	10888	22015	22015					0.11943398387211346
QFRRKFTL	8	Unmodified	_QFRRKFTL_					0	0	0			REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.326171875	2	548.324725	1094.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.16	1	101.2	100.7	101.7	0.042755								0	0	0	0.38822	1	25744	25744		2.3027	0	1		+		16322	8650	10776	10889	22016	22016					0.09136550562334378
QFSDVLVTI	9	Unmodified	_QFSDVLVTI_					0	0	0			REV__ENSG00000175294|ENST00000312106|CATSPER1	REV__ENSG00000175294|ENST00000312106|CATSPER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.281982421875	2	511.281857	1020.54916	0.44838	0.00022925	-0.75964	-0.00038839	-0.31126	-0.00015914	511.28133974649273	77.832	0.40988	77.867	77.675	78.085	0.034485					20	13	2	0	0	0	0.07372	1	18648	18648		38.176	0	1	189130	+		16323	10376	10777	10890	22017	22017					0.03970920866152028
QFSDVLVTI	9	Unmodified	_QFSDVLVTI_					0	0	0			REV__ENSG00000175294|ENST00000312106|CATSPER1	REV__ENSG00000175294|ENST00000312106|CATSPER1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	511.281857	1020.54916	0.28439	0.0001454	-0.47333	-0.00024201	-0.18894	-9.6602E-05	511.2814814433641	77.887	0.35416	77.887	77.743	78.097	0	0.01008	0.00020181	NaN	38.176	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170740	+		16324	10376	10777	10890							0.03970920866152028
QFSDVLVTI	9	Unmodified	_QFSDVLVTI_					0	0	0			REV__ENSG00000175294|ENST00000312106|CATSPER1	REV__ENSG00000175294|ENST00000312106|CATSPER1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	511.281857	1020.54916	0.44838	0.00022925	-0.75964	-0.00038839	-0.31126	-0.00015914	511.28133974649273	77.832	0.40988	77.867	77.675	78.085	0.034485	-0.01008	-9.0954E-05	NaN	38.176	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189130	+		16325	10376	10777	10890							0.03970920866152028
QFSEAFSLLNF	11	Unmodified	_QFSEAFSLLNF_					0	0	0			REV__nc|ENSG00000175267|A6NCI4-3|VWA3A	REV__nc|ENSG00000175267|A6NCI4-3|VWA3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8824462890625	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.882	1	63.953	63.453	64.453	0.071018								0	0	0	0.33466	1	14400	14400		2.6312	0.88896	1		+		16326	10375	10778	10891	22018	22018					-0.009546375306626942
QFSEAFSLLNF	11	Unmodified	_QFSEAFSLLNF_					0	0	0			REV__nc|ENSG00000175267|A6NCI4-3|VWA3A	REV__nc|ENSG00000175267|A6NCI4-3|VWA3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8824157714844	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.285	1	64.356	63.856	64.856	0.071014								0	0	0	0.33867	1	14523	14523		1.2148	0.4383	1		+		16327	10375	10778	10891	22019	22019					-0.009546375306626942
QFSWNNFL	8	Unmodified	_QFSWNNFL_					0	0	0		ENSG00000101846|ENST00000674429|STS;nc|ENSG00000101846|P08842|STS	ENSG00000101846|ENST00000674429|STS	ENSG00000101846|ENST00000674429|STS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7562866210938	2	528.250892	1054.48723	0.37289	0.00019698	3.7861	0.002	4.159	0.002197	528.7556446190633	85.846	0.35422	85.846	85.605	85.959	0					24	14	3	0	0	0	0.53423	1	21234	21234		5.2307	0	1	181350			16328	1274	10779	10892	22020	22020					-0.03783385762335456
QFVEFRLKTL	10	Unmodified	_QFVEFRLKTL_					0	0	0			REV__ENSG00000143630|ENST00000368358|HCN3	REV__ENSG00000143630|ENST00000368358|HCN3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.8694458007812	2	640.871705	1279.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.73	1	105.76	105.26	106.26	0.029739								0	0	0	0.33892	1	27059	27059		1.4819	0.28856	1		+		16329	9472	10780	10893	22021	22021					0.10018224873942927
QFVPPLPEW	9	Unmodified	_QFVPPLPEW_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3032836914062	2	556.792392	1111.57023	0.40193	0.00022379	-2.3395	-0.0013026	-1.9376	-0.0010788	556.7911224074024	87.219	0.4574	87.219	87.116	87.574	0					20	17	2	0	0	0	0.20194	1	21694	21694		24.021	10.115	1	110710			16330	334	10781	10894	22022	22022					0.01890930965669213
QFYPFLYNI	9	Unmodified	_QFYPFLYNI_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8229370117188	2	602.8055	1203.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.981	1	68.045	67.545	68.545	0.063507								0	0	0	0.15116	1	15640	15640		25.399	4.9848	1				16331	7453	10782	10895	22023	22023					0.002792001371517472
QGCWACLGF	9	Unmodified	_QGCWACLGF_					0	0	0		ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.70697021484375	2	492.706948	983.399343	-0.073591	-3.6259E-05	0.5228	0.00025759	0.44921	0.00022133	492.70710327605747	29.659	1.2829	29.659	29.232	30.515	0					135	65	3	0	0	0	0.24365	2	4166	4166;4252		13.508	13.508	1	497490			16332	7163	10783	10896	22024;22025	22024					-0.09302045948970772
QGCWACLGF	9	Unmodified	_QGCWACLGF_					0	0	0		ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.70654296875	2	492.706948	983.399343	-0.04373	-2.1546E-05	0.51066	0.00025161	0.46693	0.00023006	492.7070648614959	32.253	3.418	32.253	31.258	34.676	0					230	140	2	0	0	0	0.24365	3	4891	4891;4980;5107		13.508	13.508	1	229790			16333	7163	10783	10896	22026;22027;22028	22026					-0.09302045948970772
QGCWACLGF	9	Unmodified	_QGCWACLGF_					0	0	0		ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7070617675781	2	492.706948	983.399343	-0.023653	-1.1654E-05	0.58753	0.00028948	0.56388	0.00027783	492.70711872607893	32.165	2.2865	32.238	31.284	33.571	0.073784					244	106	3	0	0	0	0.24365	2	4755	4755;4926		13.508	13.508	1	193360			16334	7163	10783	10896	22029;22030	22029					-0.09302045948970772
QGCWACLGF	9	Unmodified	_QGCWACLGF_					0	0	0		ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	492.706948	983.399343	-0.073591	-3.6259E-05	0.5228	0.00025759	0.44921	0.00022133	492.70710327605747	29.659	1.2829	29.659	29.232	30.515	0	0.012481	-3.869E-05	NaN	13.508	135	65	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497490			16335	7163	10783	10896							-0.09302045948970772
QGCWACLGF	9	Unmodified	_QGCWACLGF_					0	0	0		ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.706948	983.399343	-0.023653	-1.1654E-05	0.58753	0.00028948	0.56388	0.00027783	492.70711872607893	32.165	2.2865	32.238	31.284	33.571	0.073784	-0.0073707	4.0192E-05	NaN	13.508	244	106	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193360			16336	7163	10783	10896							-0.09302045948970772
QGCWACLGF	9	Unmodified	_QGCWACLGF_					0	0	0		ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	ENST00000562410.5_1_16:75579850-75589867:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.706948	983.399343	-0.069029	-3.4011E-05	0.5942	0.00029277	0.52517	0.00025875	492.7071382552569	29.556	1.6063	29.634	28.96	30.566	0.078287	-0.012481	3.1665E-05	NaN	13.508	153	99	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505870			16337	7163	10783	10896							-0.09302045948970772
QGDMEGIIPG	10	Unmodified	_QGDMEGIIPG_					0	0	0		nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000013016|ENST00000322054|EHD3	nc|ENSG00000013016|Q9NZN3-2|EHD3	nc|ENSG00000013016|Q9NZN3-2|EHD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.73944091796875	2	508.739499	1015.46445	-0.24912	-0.00012674	0.044919	2.2852E-05	-0.2042	-0.00010389	508.7394589953189	24.854	0.92788	24.854	24.62	25.548	0					193	70	4	0	0	0	0.38912	1	2792	2792		13.042	0	1	169530			16338	443	10784	10897	22031	22031					-0.0426677294210549
QGDMIGPEVA	10	Unmodified	_QGDMIGPEVA_					0	0	0		ENST00000357710.8_1_14:73686172-73686376:+|nuORF	ENST00000357710.8_1_14:73686172-73686376:+|nuORF	ENST00000357710.8_1_14:73686172-73686376:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7396240234375	2	508.739499	1015.46445	-0.062435	-3.1763E-05	-0.0016295	-8.2899E-07	-0.064064	-3.2592E-05	508.73940757799994	24.845	0.72879	24.941	24.576	25.304	0.096073					169	63	3	0	0	0	0.38912	2	2625	2625;2659		13.042	0	1	186240			16339	6136	10785	10898	22032;22033	22032					-0.04266772942116859
QGDPSVQMV	9	Unmodified	_QGDPSVQMV_					0	0	0			REV__ENST00000587391.5_1_19:36573967-36592308:+|nuORF	REV__ENST00000587391.5_1_19:36573967-36592308:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7261047363281	2	480.726392	959.438231	-0.54472	-0.00026186	0.54244	0.00026076	-0.0022851	-1.0985E-06	480.7265161145041	21.571	0.67104	21.571	21.381	22.052	0					123	62	3	0	0	0	0.33849	1	1873	1873		1.6526	0	1	92019	+		16340	8200	10786	10899	22034	22034					-0.04311042113579333
QGDPVASAIK	10	Unmodified	_QGDPVASAIK_					0	0	0		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7070617675781	2	493.269281	984.52401	-0.017146	-8.4574E-06	2.9951	0.0014774	2.978	0.0014689	493.26912571800597	32.723	0.65139	32.723	32.333	32.985	0					61	30	3	0	0	0	0.31496	1	5022	5022		13.906	2.2658	1	45071			16341	4089	10787	10900	22035	22035					0.03112866063565889
QGELHSSVL	9	Unmodified	_QGELHSSVL_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2530822753906	2	485.253631	968.49271	-0.82819	-0.00040188	-0.19491	-9.4578E-05	-1.0231	-0.00049646	485.25344417042817	41.95	0.92001	41.95	41.679	42.599	0					65	31	3	0	0	0	0.12809	1	7904	7904		26.884	7.6267	1	498610	+		16342	11141	10788	10901	22036	22036					0.007202930294738508
QGELHSSVL	9	Unmodified	_QGELHSSVL_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2535095214844	2	485.253631	968.49271	-0.609	-0.00029552	0.19576	9.4993E-05	-0.41324	-0.00020052	485.2536809841858	41.875	0.78466	41.965	41.736	42.52	0.089767					64	29	3	0	0	0	0.092418	2	7745	7696;7745		34.102	10.082	1	410330	+		16343	11141	10788	10901	22037;22038	22038					0.007202930294738508
QGEQYCGQPER	11	Unmodified	_QGEQYCGQPER_					0	0	0			REV__ENSG00000160191|ENST00000291539|PDE9A	REV__ENSG00000160191|ENST00000291539|PDE9A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.8851623535156	3	432.187543	1293.5408	0.47776	0.00020648	-1.3841	-0.00059819	-0.90634	-0.00039171	432.5215897085377	61.971	0.38702	61.971	61.816	62.203	0					37	15	3	0	0	0	0.31072	1	13990	13990		1.9275	0.18523	1	202820	+		16344	9841	10789	10902	22039	22039					-0.09423001112804741
QGEQYCGQPER	11	Unmodified	_QGEQYCGQPER_					0	0	0			REV__ENSG00000160191|ENST00000291539|PDE9A	REV__ENSG00000160191|ENST00000291539|PDE9A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	432.187543	1293.5408	0.17138	7.407E-05	-1.3648	-0.00058986	-1.1934	-0.00051579	432.1858399851457	61.91	0.39791	61.984	61.838	62.236	0.073421	0.0062035	1.371E-05	NaN	1.9275	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151080	+		16345	9841	10789	10902							-0.09423001112804741
QGFLIYKPCIW	11	Unmodified	_QGFLIYKPCIW_					0	0	0		ENST00000581335.1_1_17:73224204-73224372:+|nuORF	ENST00000581335.1_1_17:73224204-73224372:+|nuORF	ENST00000581335.1_1_17:73224204-73224372:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.91424560546875	3	456.577531	1366.71076	0.58709	0.00026805	2.461	0.0011236	3.048	0.0013917	456.5785371620368	67.536	0.37697	67.536	67.348	67.725	0					19	13	2	0	0	0	0.37201	1	15675	15675		9.7643	5.3581	1	71534			16346	7222	10790	10903	22040	22040					0.04207766627564524
QGFLIYKPCIW	11	Unmodified	_QGFLIYKPCIW_					0	0	0		ENST00000581335.1_1_17:73224204-73224372:+|nuORF	ENST00000581335.1_1_17:73224204-73224372:+|nuORF	ENST00000581335.1_1_17:73224204-73224372:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.57928466796875	3	456.577531	1366.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.983	1	68.983	68.483	69.483	0								0	0	0	0.32874	1	16096	16096		4.7159	2.0847	1				16347	7222	10790	10903	22041	22041					0.04207766627564524
QGFVIELLL	9	Unmodified	_QGFVIELLL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3102416992188	2	516.310418	1030.60628	0.47784	0.00024672	-0.10186	-5.2591E-05	0.37599	0.00019413	516.3099821661827	100.31	0.51563	100.31	100.04	100.55	0					62	28	3	0	0	0	0.2546	2	25618	25618;25657		12.241	0	1	93860			16348	824	10791	10904	22042;22043	22042					0.09220388142512093
QGFVIELLL	9	Unmodified	_QGFVIELLL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3096923828125	2	516.310418	1030.60628	0.51644	0.00026664	-0.5632	-0.00029078	-0.04676	-2.4143E-05	516.3098501424819	100.25	0.4323	100.29	100.1	100.54	0.042839					45	23	3	0	0	0	0.16392	2	25445	25445;25486		22.736	0	1	111240			16349	824	10791	10904	22044;22045	22044					0.09220388142512093
QGGQIEFRD	9	Unmodified	_QGGQIEFRD_					0	0	0		ENSG00000091262|ENST00000205557|ABCC6	ENSG00000091262|ENST00000205557|ABCC6	ENSG00000091262|ENST00000205557|ABCC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2554321289062	2	525.254163	1048.49377	0.074505	3.9134E-05	-0.46223	-0.00024279	-0.38773	-0.00020366	525.2538371729764	58.843	1.0879	58.913	58.533	59.621	0.070477					53	40	2	0	0	0	0.18364	1	12822	12822		20.454	5.6154	1	173060			16350	1059	10792	10905	22046	22046					-0.02853492601616381
QGHQRVHT	8	Unmodified	_QGHQRVHT_					0	0	0		nc|ENSG00000278318|Q9UJW7-2|ZNF229;ENSG00000278318|ENST00000614049|ZNF229;ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112	nc|ENSG00000278318|Q9UJW7-2|ZNF229	nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.74774169921875	2	481.749382	961.484211	-0.4504	-0.00021698	-1.1477	-0.00055291	-1.5981	-0.00076989	481.7486355805659	25.966	0.26635	25.966	25.836	26.102	0					28	20	2	0	0	0	0.53494	1	3140	3140		4.756	0	1	21103			16351	5761	10793	10906	22047	22047					0.0019278390351473718
QGHQRVHT	8	Unmodified	_QGHQRVHT_					0	0	0		nc|ENSG00000278318|Q9UJW7-2|ZNF229;ENSG00000278318|ENST00000614049|ZNF229;ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112	nc|ENSG00000278318|Q9UJW7-2|ZNF229	nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	481.749382	961.484211	-0.33246	-0.00016016	-0.80496	-0.00038779	-1.1374	-0.00054795	481.74876374789926	25.833	0.16427	25.924	25.824	25.988	0.091507	-0.020807	0.00019463	NaN	4.756	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14931			16352	5761	10793	10906							0.0019278390351473718
QGIGTDVYL	9	Unmodified	_QGIGTDVYL_					0	0	0		ENST00000394950.7_1_16:31123427-31123583:+|nuORF;ENSG00000103507|ENST00000219794|BCKDK	ENST00000394950.7_1_16:31123427-31123583:+|nuORF	ENST00000394950.7_1_16:31123427-31123583:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2498779296875	2	483.250557	964.486562	-0.4004	-0.00019349	0.17068	8.2481E-05	-0.22972	-0.00011101	483.25063273229307	43.928	0.89114	43.928	43.663	44.554	0					105	30	5	0	0	0	0.19398	1	8642	8642		19.257	0	1	2537000			16353	1376	10794	10907	22048	22048					0.002897747979545784
QGIGTDVYL	9	Unmodified	_QGIGTDVYL_					0	0	0		ENST00000394950.7_1_16:31123427-31123583:+|nuORF;ENSG00000103507|ENST00000219794|BCKDK	ENST00000394950.7_1_16:31123427-31123583:+|nuORF	ENST00000394950.7_1_16:31123427-31123583:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.25006103515625	2	483.250557	964.486562	-0.26606	-0.00012857	0.28238	0.00013646	0.016324	7.8886E-06	483.25064791239623	43.838	1.0519	43.927	43.683	44.735	0.088924					95	36	4	0	0	0	0.19398	1	8471	8471		19.257	0	1	2086400			16354	1376	10794	10907	22049	22049					0.002897747979545784
QGKVGSQDIL	10	Unmodified	_QGKVGSQDIL_					0	0	0		ENST00000496144.5_1_8:100515159-100589873:+|nuORF	ENST00000496144.5_1_8:100515159-100589873:+|nuORF	ENST00000496144.5_1_8:100515159-100589873:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3036499023438	2	522.787838	1043.56112	0.50526	0.00026414	3.7711	0.0019715	4.2764	0.0022356	522.789462213976	84.854	0.30947	84.877	84.726	85.035	0.023132					22	13	2	0	0	0	0.36848	1	20802	20802		15.248	1.3424	1	149250			16355	6837	10795	10908	22050	22050					0.04108537609317864
QGLELAREL	9	Unmodified	_QGLELAREL_					0	0	0		ENSG00000123999|ENST00000243786|INHA	ENSG00000123999|ENST00000243786|INHA	ENSG00000123999|ENST00000243786|INHA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.790771484375	2	514.790381	1027.56621	0.60424	0.00031106	-0.70364	-0.00036223	-0.0994	-5.117E-05	514.7904007946855	55.067	0.92226	55.067	54.798	55.72	0					85	33	4	0	0	0	0.026209	1	11841	11841		53.833	3.8998	1	1413500			16356	2232	10796	10909	22051	22051					0.05352841471949432
QGLELAREL	9	Unmodified	_QGLELAREL_					0	0	0		ENSG00000123999|ENST00000243786|INHA	ENSG00000123999|ENST00000243786|INHA	ENSG00000123999|ENST00000243786|INHA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7908325195312	2	514.790381	1027.56621	0.59667	0.00030716	-0.80462	-0.00041421	-0.20794	-0.00010705	514.7903655334807	55.017	0.74474	55.082	54.803	55.548	0.065128					82	29	4	0	0	0	0.03918	1	11689	11689		45.7	3.86	1	934780			16357	2232	10796	10909	22052	22052					0.05352841471949432
QGLLSRLR	8	Unmodified	_QGLLSRLR_					0	0	0			REV__LTR88b_dup1331|chr15:56885665-56885983:-|1.745851856901987|0.0198811332927147|6.46|522.0|3|2|sense	REV__LTR88b_dup1331|chr15:56885665-56885983:-|1.745851856901987|0.0198811332927147|6.46|522.0|3|2|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.78466796875	2	471.795801	941.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.874	1	53.939	53.439	54.439	0.065128								0	0	0	0.38822	1	11357	11357		13.508	0	1		+		16358	12726	10797	10910	22053	22053					0.1039228863688777
QGLREEALL	9	Unmodified	_QGLREEALL_					0	0	0		ENST00000584106.1_1_17:37034352-37046744:+|nuORF;nc|ENSG00000002834|Q14847-3|LASP1	ENST00000584106.1_1_17:37034352-37046744:+|nuORF	ENST00000584106.1_1_17:37034352-37046744:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7908325195312	2	514.790381	1027.56621	0.60424	0.00031106	-0.70364	-0.00036223	-0.0994	-5.117E-05	514.7904007946855	55.067	0.92226	55.067	54.798	55.72	0					85	33	4	0	0	0	0.07372	1	11888	11888		38.176	0	1	1413500			16359	7233	10798	10911	22054	22054					0.05352841471949432
QGPLWALLLEK	11	Unmodified	_QGPLWALLLEK_					0	0	0		ENST00000399083.1_1_17:19061550-19062206:-|nuORF	ENST00000399083.1_1_17:19061550-19062206:-|nuORF	ENST00000399083.1_1_17:19061550-19062206:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9088745117188	2	634.374081	1266.73361	0.24845	0.00015761	3.2438	0.0020578	3.4923	0.0022154	634.3762852996188	108.79	0.14047	108.81	108.76	108.9	0.019409					39	19	3	0	0	0	0.31057	1	27831	27831		5.2969	0.39987	1	6603600			16360	6356	10799	10912	22055	22055					0.11091109016683731
QGQHRDHR	8	Unmodified	_QGQHRDHR_					0	0	0			REV__ENSG00000149635|ENST00000279028|OCSTAMP	REV__ENSG00000149635|ENST00000279028|OCSTAMP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.748046875	2	517.255363	1032.49617	0.53595	0.00027723	-1.8448	-0.00095421	-1.3088	-0.00067698	517.2560523674127	54.093	0.13698	54.158	54.117	54.254	0.065128					8	5	2	0	0	0	0.3576	1	11431	11431		5.2307	1.2863	1	30663	+		16361	9619	10800	10913	22056	22056					-0.01877599353315418
QGQKRLLD	8	Unmodified	_QGQKRLLD_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.277099609375	2	479.277441	956.540328	0.16345	7.8337E-05	0.11031	5.2868E-05	0.27376	0.00013121	479.27738708472776	78.766	3.0918	78.766	77.899	80.99	0					356	107	4	0	0	0	0.53858	1	18900	18900		2.3027	0	1	1643400	+		16362	10945	10801	10914	22057	22057					0.06031992020314192
QGQPDIYKAF	10	Unmodified	_QGQPDIYKAF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3098754882812	2	583.795663	1165.57677	0.46516	0.00027156	0.95329	0.00055652	1.4184	0.00082808	583.7961998934205	102.21	0.64703	102.21	101.98	102.63	0					52	43	2	0	0	0	0.32016	1	26185	26185		20.415	3.3016	1	448240			16363	4336	10802	10915	22058	22058					0.000608241263535092
QGQPDIYKAF	10	Unmodified	_QGQPDIYKAF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	583.795663	1165.57677	0.72648	0.00042412	0.7352	0.00042921	1.4617	0.00085332	583.7960707645427	102.14	0.62098	102.18	101.9	102.52	0.042656	-0.014448	-0.00010042	NaN	20.415	88	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200550			16364	4336	10802	10915							0.000608241263535092
QGRLQVEKP	9	Unmodified	_QGRLQVEKP_					0	0	0			REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2551879882812	2	527.803823	1053.59309	0.10383	5.4802E-05	-0.1109	-5.8535E-05	-0.007072	-3.7326E-06	527.8039799356688	35.514	0.14415	35.514	35.417	35.561	0					6	4	2	0	0	0	0.25875	1	5927	5927		1.8442	0	1	21392	+		16365	12527	10803	10916	22059	22059					0.06843950083134587
QGTGDRCCF	9	Unmodified	_QGTGDRCCF_					0	0	0		ENST00000527114.5_1_8:38277278-38277374:-|nuORF	ENST00000527114.5_1_8:38277278-38277374:-|nuORF	ENST00000527114.5_1_8:38277278-38277374:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.22418212890625	2	493.694569	985.374585	-0.010049	-4.961E-06	0.85125	0.00042026	0.84121	0.0004153	493.69493416256205	32.233	1.0879	32.233	31.897	32.985	0					68	47	2	0	0	0	0.2446	1	5183	5183		11.64	5.8799	1	29723			16366	7000	10804	10917	22060	22060					-0.1186872582234173
QGTPDEGALT	10	Unmodified	_QGTPDEGALT_					0	0	0			REV__nc|ENSG00000140506|Q9HAT1-3|LMAN1L	REV__nc|ENSG00000140506|Q9HAT1-3|LMAN1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7604064941406	2	494.732729	987.450904	0.36812	0.00018212	-2.5933	-0.001283	-2.2252	-0.0011009	494.7315461710785	36.976	0.47856	37.058	36.79	37.269	0.081715					26	18	2	0	0	0	0.31712	1	6191	6191		6.7232	2.3939	1	30358	+		16367	12802	10805	10918	22061	22061					-0.043323074497266134
QGTVDGIVV	9	Unmodified	_QGTVDGIVV_					0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	444.24615478515625	2	444.245275	886.475997	0.59537	0.00026449	1.2942	0.00057494	1.8896	0.00083943	444.245796114447	99.795	1.2965	99.795	99.433	100.73	0					142	72	2	0	0	0	0.3182	1	25427	25427		4.3292	0	1	21068000			16368	3644	10806	10919	22062	22062					0.028217921435384596
QGTVDGIVV	9	Unmodified	_QGTVDGIVV_					0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	444.245275	886.475997	0.38522	0.00017113	1.4171	0.00062954	1.8023	0.00080067	444.245953781508	99.714	1.6138	99.757	99.409	101.02	0.042839	-0.018904	4.6261E-05	NaN	4.3292	242	100	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23029000			16369	3644	10806	10919							0.028217921435384596
QGYGSVVFF	9	Unmodified	_QGYGSVVFF_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|214|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|214|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|214|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.24859619140625	2	502.247818	1002.48108	0.22233	0.00011166	3.6435	0.00183	3.8659	0.0019416	502.24930927773426	95.397	0.36641	95.397	95.175	95.541	0					29	15	3	0	0	0	0.14091	1	24186	24186		25.399	0.72543	1	346870			16370	7406	10807	10920	22063	22063					-0.02005903993847369
QGYYPCVPSF	10	Unmodified	_QGYYPCVPSF_					0	0	0			REV__ENST00000280612.9_1_4:139163161-139163278:-|nuORF	REV__ENST00000280612.9_1_4:139163161-139163278:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.271484375	2	580.757692	1159.50083	-0.29932	-0.00017383	-1.4851	-0.00086247	-1.7844	-0.0010363	580.7567052431654	41.03	0.75017	41.03	40.656	41.407	0					45	26	2	0	0	0	0.43972	1	7660	7660		6.7232	1.4263	1	69726	+		16371	11293	10808	10921	22064	22064					-0.072538960454267
QGYYPCVPSF	10	Unmodified	_QGYYPCVPSF_					0	0	0			REV__ENST00000280612.9_1_4:139163161-139163278:-|nuORF	REV__ENST00000280612.9_1_4:139163161-139163278:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.271728515625	2	580.757692	1159.50083	-0.070865	-4.1155E-05	-1.847	-0.0010726	-1.9178	-0.0011138	580.7564226122008	40.946	0.77254	41.035	40.626	41.398	0.089645					33	28	2	0	0	0	0.43972	1	7485	7485		6.7232	0.99131	1	40566	+		16372	11293	10808	10921	22065	22065					-0.072538960454267
QHDRRCHM	8	Unmodified	_QHDRRCHM_					0	0	0		ENST00000368358.3_1_1:155253838-155255029:+|nuORF	ENST00000368358.3_1_1:155253838-155255029:+|nuORF	ENST00000368358.3_1_1:155253838-155255029:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2525024414062	2	541.740177	1081.4658	-0.017575	-9.5211E-06	-4.4751	-0.0024244	-4.4927	-0.0024339	541.7381299977168	33.476	0.16972	33.476	33.378	33.548	0					6	5	2	0	0	0	0.3576	1	5309	5309		0.79363	0.10326	1	16787			16373	6183	10809	10922	22066	22066					-0.07167417334358106
QHFFNQNFL	9	Unmodified	_QHFFNQNFL_					0	0	0		nc|ENSG00000101888|Q9NPJ8-4|NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2;chrX:109535977-109536937|142|21.89|0.39|5.8|+|ENST00000218004|NXT2,NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2872924804688	2	597.788173	1193.56179	0.31628	0.00018907	2.0651	0.0012345	2.3814	0.0014236	598.2911543166997	93.72	2.3336	93.757	92.837	95.171	0.037369					122	101	2	0	0	0	0.26684	1	23391	23391		10.824	0.75	1	1447000			16374	188	10810	10923	22067	22067					-0.027246229509501063
QHFQQYLL	8	Unmodified	_QHFQQYLL_					0	0	0		nc|ENSG00000141431|Q9C0F0-2|ASXL3;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant;ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3	nc|ENSG00000141431|Q9C0F0-2|ASXL3	nc|ENSG00000141431|Q9C0F0-2|ASXL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7793579101562	2	538.779816	1075.54508	0.30487	0.00016426	-1.0968	-0.00059094	-0.79194	-0.00042668	538.7792282374293	78.715	0.33557	78.715	78.54	78.875	0					25	11	3	0	0	0	0.45077	2	19100	19061;19100		19.439	0	1	278180			16375	61	10811	10924	22068;22069	22069					0.010328761630944427
QHFQQYLL	8	Unmodified	_QHFQQYLL_					0	0	0		nc|ENSG00000141431|Q9C0F0-2|ASXL3;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant;ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3	nc|ENSG00000141431|Q9C0F0-2|ASXL3	nc|ENSG00000141431|Q9C0F0-2|ASXL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2677612304688	2	538.779816	1075.54508	0.53404	0.00028773	-1.1622	-0.00062618	-0.62818	-0.00033845	538.7791964358643	78.738	0.32265	78.768	78.589	78.911	0.030159					17	10	2	0	0	0	0.49441	2	18916	18916;18931		13.508	1.8676	1	190330			16376	61	10811	10924	22070;22071	22070					0.010328761630944427
QHIIRREVTD	10	Unmodified	_QHIIRREVTD_					0	0	0		nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4	nc|ENSG00000111199|Q9HBA0-4|TRPV4	nc|ENSG00000111199|Q9HBA0-4|TRPV4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.5819091796875	3	422.901954	1265.68403	0.20696	8.7524E-05	-0.70497	-0.00029813	-0.49801	-0.00021061	423.2359663725212	91.807	0.83913	91.843	91.531	92.371	0.036522					41	29	2	0	0	0	0.31786	1	22899	22899		5.0475	0	1	80733			16377	1692	10812	10925	22072	22072					0.06181794060603352
QHIKKKKKVKG	11	Unmodified	_QHIKKKKKVKG_					0	0	0			REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF	REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2975769042969	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.513	1	29.591	29.091	30.091	0.078287								0	0	0	0.34212	1	4031	4031		0	0	1		+		16378	8485	10813	10926	22073	22073					0.22417277055797058
QHIKKKKKVKG	11	Unmodified	_QHIKKKKKVKG_					0	0	0			REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF	REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.297607421875	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.702	1	34.778	34.278	35.278	0.076244								0	0	0	0.34212	1	5577	5577		0	0	1		+		16379	8485	10813	10926	22074	22074					0.22417277055797058
QHKILTSSDS	10	Unmodified	_QHKILTSSDS_					0	0	0			REV__ENSG00000196391|ENST00000354377|ZNF774	REV__ENSG00000196391|ENST00000354377|ZNF774	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2882080078125	2	558.288202	1114.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.98	1	31.98	31.48	32.48	0								0	0	0	0.33892	1	4885	4885		1.4819	0	1		+		16380	10815	10814	10927	22075	22075					0.00915332258387025
QHKRMPLL	8	Unmodified	_QHKRMPLL_					0	0	0		ENST00000463083.1_2_6:34214582-34214708:-|nuORF;nc|ENSG00000186577|Q86T20-2|SMIM29;ENSG00000186577|ENST00000476320|SMIM29	ENST00000463083.1_2_6:34214582-34214708:-|nuORF	ENST00000463083.1_2_6:34214582-34214708:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7847900390625	2	511.800029	1021.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.559	1	60.559	60.059	61.059	0								0	0	0	0.38822	1	13527	13527		2.8892	0	1				16381	5087	10815	10928	22076	22076					0.07557519281874647
QHLKGLTKTK	10	Unmodified	_QHLKGLTKTK_					0	0	0			REV__nc|ENSG00000173120|Q9Y2K7-5|KDM2A	REV__nc|ENSG00000173120|Q9Y2K7-5|KDM2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3574829101562	2	577.356222	1152.69789	0.32539	0.00018787	1.2329	0.0007118	1.5583	0.00089967	577.3568764646162	109.64	0.090164	109.65	109.57	109.66	0.017242					11	8	2	0	0	0	0.46899	1	28044	28044		1.1933	0	1	852040	+		16382	12845	10816	10929	22077	22077					0.12765071559692842
QHLYVTLRT	9	Unmodified	_QHLYVTLRT_					0	0	0		nc|ENSG00000188263|Q6ZVW7-2|IL17REL;ENSG00000188263|ENST00000695950|IL17REL	nc|ENSG00000188263|Q6ZVW7-2|IL17REL	nc|ENSG00000188263|Q6ZVW7-2|IL17REL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2341918945312	2	565.819473	1129.62439	-0.028158	-1.5932E-05	-0.3954	-0.00022373	-0.42356	-0.00023966	565.8192181786692	44.404	0.42987	44.493	44.305	44.735	0.088924					15	14	2	0	0	0	0.259	1	8449	8449		1.6526	0	1	34375			16383	5148	10817	10930	22078	22078					0.06476523117225952
QHMERCTSF	9	Unmodified	_QHMERCTSF_					0	0	0		ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2559204101562	2	569.742051	1137.46955	0.29694	0.00016918	0.68705	0.00039144	0.98399	0.00056062	569.7423500220717	96.199	0.53622	96.199	95.978	96.515	0					36	26	2	0	0	0	0.29105	1	24425	24425		7.9102	1.5561	1	584960			16384	1967	10818	10931	22079	22079					-0.09368792351142474
QHMGYYSSYK	10	Unmodified	_QHMGYYSSYK_					0	0	0		ENSG00000182050|ENST00000611864|MGAT4C;nc|ENSG00000182050|Q9UBM8-2|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5745849609375	3	421.853612	1262.53901	0.12171	5.1343E-05	2.6425	0.0011147	2.7642	0.0011661	422.1893577232039	37.361	0.18397	37.446	37.321	37.505	0.084476					11	6	2	0	0	0	0.31854	1	6376	6376		0.12286	0.039514	1	16085			16385	4856	10819	10932	22080	22080					-0.0817601013075091
QHPAFGKTA	9	Unmodified	_QHPAFGKTA_					0	0	0			REV__ENST00000509132.1_1_18:3977886-3978309:-|nuORF	REV__ENST00000509132.1_1_18:3977886-3978309:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7375183105469	2	478.751059	955.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.341	1	25.437	24.937	25.937	0.096073								0	0	0	0.28631	1	2817	2817		1.8442	0	1		+		16386	12246	10820	10933	22081	22081					0.008040339575245525
QHPETPLHIS	10	Unmodified	_QHPETPLHIS_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000561677.6_1_16:69782679-69783527:-|nuORF;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.7988891601562	2	579.798737	1157.58292	0.41474	0.00024047	-1.1968	-0.00069388	-0.78202	-0.00045342	579.7986235169478	47.863	0.35942	47.863	47.763	48.123	0					19	12	2	0	0	0	0.4101	1	9686	9686		10.8	0	1	60655			16387	3044	10821	10934	22082	22082					0.010433423579115697
QHPKEFPV	8	Unmodified	_QHPKEFPV_					0	0	0		ENST00000487863.5_1_19:53056575-53056806:+|nuORF	ENST00000487863.5_1_19:53056575-53056806:+|nuORF	ENST00000487863.5_1_19:53056575-53056806:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.62109375	2	491.261259	980.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.57	1	114.57	114.07	115.07	0								0	0	0	0.38822	1	29258	29258		2.5775	0	1				16388	6793	10822	10935	22083	22083					0.016932046173337767
QHQKVHRK	8	Unmodified	_QHQKVHRK_					0	0	0		nc|ENSG00000196150|P15622-2|ZNF250;ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622|ZNF250	nc|ENSG00000196150|P15622-2|ZNF250	nc|ENSG00000196150|P15622-2|ZNF250	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.81201171875	2	530.809774	1059.60499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.97	1	115.97	115.47	116.47	0								0	0	0	0.38822	1	29549	29549		0.69038	0.088878	1				16389	5208	10823	10936	22084	22084					0.0775761161698938
QHQLTDIL	8	Unmodified	_QHQLTDIL_					0	0	0			REV__nc|ENSG00000137831|Q9BZF9-2|UACA	REV__nc|ENSG00000137831|Q9BZF9-2|UACA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2642822265625	2	484.263999	966.513445	0.22323	0.0001081	-0.14211	-6.8819E-05	0.081123	3.9285E-05	484.26398194145924	47.511	0.49749	47.594	47.376	47.874	0.083096					33	19	3	0	0	0	0.50815	1	9443	9443		11.64	0	1	107070	+		16390	9288	10824	10937	22085	22085					0.028848834091377284
QHRKVPQRM	9	Unmodified	_QHRKVPQRM_					0	0	0		nc|ENSG00000187720|Q6ZMP0-2|THSD4;ENSG00000187720|ENST00000261862|THSD4	nc|ENSG00000187720|Q6ZMP0-2|THSD4	nc|ENSG00000187720|Q6ZMP0-2|THSD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.330810546875	2	590.330016	1178.64548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.193	1	30.268	29.768	30.768	0.075403								0	0	0	0.2927	1	4232	4232		0.52476	0	1				16391	5129	10825	10938	22086	22086					0.06330209945076604
QHRPPYYGYVK	11	Unmodified	_QHRPPYYGYVK_					0	0	0		nc|ENSG00000010072|Q9H040-3|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN;ENSG00000010072|ENST00000295050|SPRTN	nc|ENSG00000010072|Q9H040-3|SPRTN	nc|ENSG00000010072|Q9H040-3|SPRTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.582275390625	3	469.910449	1406.70952	-0.061998	-2.9133E-05	-0.8214	-0.00038599	-0.8834	-0.00041512	469.90977381129557	59.465	0.32715	59.537	59.271	59.599	0.072338					19	11	2	0	0	0	0.31087	1	13047	13047		2.8433	0.4085	1	88746			16392	408	10826	10939	22087	22087					0.022432685830153787
QHSEICAIITQ	11	Unmodified	_QHSEICAIITQ_					0	0	0			REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF	REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8115844726562	2	621.810987	1241.60742	-0.028805	-1.7911E-05	0.51477	0.00032009	0.48597	0.00030218	621.8113149738148	58.389	0.30387	58.459	58.387	58.691	0.070477					11	9	2	0	0	0	0.38315	1	12749	12749		8.1555	1.4324	1	89540	+		16393	7749	10827	10940	22088	22088					-0.003717655508808093
QHSEICAIITQ	11	Unmodified	_QHSEICAIITQ_					0	0	0			REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF	REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	621.810987	1241.60742	-0.41257	-0.00025654	0.68125	0.00042361	0.26869	0.00016707	621.8112904219229	58.579	0.23621	58.579	58.445	58.682	0	0.059594	0.00010174	NaN	8.1555	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86642	+		16394	7749	10827	10940							-0.003717655508808093
QHSEICAIITQ	11	Unmodified	_QHSEICAIITQ_					0	0	0			REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF	REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	621.810987	1241.60742	-0.028805	-1.7911E-05	0.51477	0.00032009	0.48597	0.00030218	621.8113149738148	58.389	0.30387	58.459	58.387	58.691	0.070477	-0.059594	-0.0001053	NaN	8.1555	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89540	+		16395	7749	10827	10940							-0.003717655508808093
QHTFGSKGAF	10	Unmodified	_QHTFGSKGAF_					0	0	0		ENSG00000183145|ENST00000329553|RIPPLY3	ENSG00000183145|ENST00000329553|RIPPLY3	ENSG00000183145|ENST00000329553|RIPPLY3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2798461914062	2	540.267073	1078.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.492	1	53.558	53.058	54.058	0.06543								0	0	0	0.33092	1	11240	11240		10.824	0	1				16396	4909	10828	10941	22089	22089					-0.01652598359351032
QHYVFEAKE	9	Unmodified	_QHYVFEAKE_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.792724609375	2	575.780013	1149.54547	0.032255	1.8572E-05	-1.1703	-0.00067383	-1.138	-0.00065526	575.7793075230967	73.237	0.45984	73.237	72.853	73.313	0					40	15	3	0	0	0	0.10067	1	17381	17381		32.305	0	1	2166300			16397	5436	10829	10942	22090	22090					-0.023317489077271603
QHYVFEAKE	9	Unmodified	_QHYVFEAKE_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7929077148438	2	575.780013	1149.54547	0.21083	0.00012139	-1.7545	-0.0010102	-1.5437	-0.00088882	575.7790149099868	73.625	2.0703	73.625	73.541	75.611	0					129	76	2	0	0	0	0.11547	3	17669	17626;17669;17715		29.082	9.8246	1	1497800			16398	5436	10829	10942	22091;22092;22093	22092					-0.023317489077271603
QHYVFEAKE	9	Unmodified	_QHYVFEAKE_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7926635742188	2	575.780013	1149.54547	0.35843	0.00020637	-1.6193	-0.00093236	-1.2609	-0.00072598	575.7791712631945	73.576	1.6039	73.629	73.461	75.065	0.052567					121	58	3	0	0	0	0.14091	4	17425	17425;17468;17510;17559		25.399	4.3632	1	1066500			16399	5436	10829	10942	22094;22095;22096;22097	22094					-0.023317489077271603
QHYYQHYYF	9	Unmodified	_QHYYQHYYF_					0	0	0		ENST00000510376.1_1_5:176332285-176333139:-|nuORF	ENST00000510376.1_1_5:176332285-176333139:-|nuORF	ENST00000510376.1_1_5:176332285-176333139:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.4950866699219	3	450.196367	1347.56727	0.21546	9.6998E-05	4.4789	0.0020164	4.6944	0.0021134	450.53294259250436	62.014	0.23616	62.087	61.972	62.208	0.073421					12	8	2	0	0	0	0.25594	1	13841	13841		4.897	1.0207	1	73839			16400	6910	10830	10943	22098	22098					-0.0926094415915486
QIAMQSLWNI	10	Unmodified	_QIAMQSLWNI_					0	0	0		ENST00000544806.1_1_11:71942502-71943381:+|nuORF	ENST00000544806.1_1_11:71942502-71943381:+|nuORF	ENST00000544806.1_1_11:71942502-71943381:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87774658203125	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.932	1	28.932	28.432	29.432	0								0	0	0	0.33443	1	3984	3984		3.5871	0.59182	1				16401	7070	10831	10944	22099	22099					0.01857743662685607
QICRFLTVLS	10	Unmodified	_QICRFLTVLS_					0	0	0			REV__nc|ENSG00000102524|Q9Y275-2|TNFSF13B	REV__nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3323364257812	2	590.331359	1178.64816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.59	1	106.61	106.11	107.11	0.025711								0	0	0	0.33738	1	27290	27290		3.2813	0.28607	1		+		16402	8454	10832	10945	22100	22100					0.06598620559361734
QIDKKLQP	8	Unmodified	_QIDKKLQP_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.706787109375	2	485.290017	968.565481	0.0817	3.9648E-05	0.98833	0.00047962	1.07	0.00051927	485.28999593280855	52.743	0.50294	52.81	52.493	52.996	0.067173					26	19	2	0	0	0	0.3576	1	10937	10937		4.756	2.1785	1	72589	+		16403	10913	10833	10946	22101	22101					0.07994046822898326
QIEHLQRKLG	10	Unmodified	_QIEHLQRKLG_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.3562622070312	2	611.356754	1220.69895	0.07397	4.5222E-05	-0.74207	-0.00045367	-0.6681	-0.00040845	611.3562727877396	86.415	0.55606	86.415	86.104	86.66	0					35	20	2	0	0	0	0.46887	1	21398	21398		2.4985	0.84587	1	147200			16404	1381	10834	10947	22102	22102					0.09743285928607293
QIEHVLLSFA	10	Unmodified	_QIEHVLLSFA_					0	0	0			REV__ENSG00000187682|ENST00000636362|ERAS	REV__ENSG00000187682|ENST00000636362|ERAS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3206176757812	2	578.821681	1155.62881	0.27641	0.00015999	1.0517	0.00060876	1.3281	0.00076876	578.8225198327365	86.954	0.74201	86.982	86.838	87.58	0.027573					54	31	2	0	0	0	0.31761	1	21479	21479		5.2969	0	1	300240	+		16405	10743	10835	10948	22103	22103					0.057219875401415266
QIEKKSLICF	10	Unmodified	_QIEKKSLICF_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5615234375	3	403.56177	1207.66348	0.37057	0.00014955	0.28966	0.00011689	0.66022	0.00026644	403.5619113666792	36.092	0.43329	36.092	35.944	36.377	0					20	16	2	0	0	0	0.45443	1	6113	6113		1.9064	0	1	35433	+		16406	8097	10836	10949	22104	22104					0.06795487356589547
QIEKKSLICF	10	Unmodified	_QIEKKSLICF_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	403.56177	1207.66348	-0.0081741	-3.2988E-06	0.79839	0.0003222	0.79021	0.0003189	403.56205809679125	36.081	0.3455	36.163	35.966	36.312	0.081715	0.035556	0.0002967	NaN	1.9064	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25990	+		16407	8097	10836	10949							0.06795487356589547
QIFQDNFAF	9	Unmodified	_QIFQDNFAF_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.765380859375	2	565.269281	1128.52401	0.52219	0.00029518	-2.8311	-0.0016003	-2.3089	-0.0013051	565.7686934477584	98.093	0.28674	98.135	97.983	98.27	0.041939					28	14	3	0	0	0	0.25809	1	24817	24817		2.3027	0	1	46014	+		16408	8301	10837	10950	22105	22105					-0.03511133936444821
QIFSGTSKR	9	Unmodified	_QIFSGTSKR_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2823486328125	2	512.282723	1022.55089	-0.25972	-0.00013305	0.52249	0.00026766	0.26277	0.00013461	512.282995774206	22.005	0.26802	22.005	21.9	22.169	0					30	24	2	0	0	0	0.33978	1	2002	2002		1.4819	0.79152	1	16491			16409	2228	10838	10951	22106	22106					0.0405197467475773
QIFSGTSKR	9	Unmodified	_QIFSGTSKR_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.28271484375	2	512.282723	1022.55089	0.06668	3.4159E-05	0.50883	0.00026066	0.57551	0.00029482	512.2829330074628	21.816	0.27441	21.918	21.827	22.101	0.10178					31	30	2	0	0	0	0.32614	2	1853	1853;1880		3.2813	0.97858	1	15963			16410	2228	10838	10951	22107;22108	22107					0.0405197467475773
QIFSGTSKR	9	Unmodified	_QIFSGTSKR_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.282723	1022.55089	-0.25972	-0.00013305	0.52249	0.00026766	0.26277	0.00013461	512.282995774206	22.005	0.26802	22.005	21.9	22.169	0	0.043769	8.3449E-06	NaN	3.2813	30	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16491			16411	2228	10838	10951							0.0405197467475773
QIFSGTSKR	9	Unmodified	_QIFSGTSKR_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.282723	1022.55089	0.06668	3.4159E-05	0.50883	0.00026066	0.57551	0.00029482	512.2829330074628	21.816	0.27441	21.918	21.827	22.101	0.10178	-0.043769	-5.6503E-06	NaN	3.2813	31	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15963			16412	2228	10838	10951							0.0405197467475773
QIGLQQFLL	9	Unmodified	_QIGLQQFLL_					0	0	0			REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF	REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.31396484375	2	530.313492	1058.61243	0.46352	0.00024581	-0.023131	-1.2267E-05	0.44039	0.00023354	530.3133669213204	73.922	1.0285	73.97	73.645	74.673	0.048538					95	37	4	0	0	0	0.25979	1	17572	17572		11.64	0	1	1175300	+		16413	9155	10839	10952	22109	22109					0.08546906374044738
QIGLSAHLIT	10	Unmodified	_QIGLSAHLIT_					0	0	0		ENST00000286195.7_2_2:202483690-202483861:-|nuORF	ENST00000286195.7_2_2:202483690-202483861:-|nuORF	ENST00000286195.7_2_2:202483690-202483861:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.2962646484375	2	526.808574	1051.60259	0.31024	0.00016343	-0.81226	-0.00042791	-0.50202	-0.00026447	526.8080745509468	90.865	0.44392	90.865	90.708	91.152	0					22	15	2	0	0	0	0.31731	1	22822	22822		6.2058	1.8765	1	134110			16414	5939	10840	10953	22110	22110					0.07885718368652306
QIGLSAHLIT	10	Unmodified	_QIGLSAHLIT_					0	0	0		ENST00000286195.7_2_2:202483690-202483861:-|nuORF	ENST00000286195.7_2_2:202483690-202483861:-|nuORF	ENST00000286195.7_2_2:202483690-202483861:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	526.808574	1051.60259	-0.0099028	-5.2169E-06	-0.499	-0.00026288	-0.50891	-0.0002681	526.8081676587808	90.817	0.4319	90.853	90.709	91.141	0.035446	-0.0060065	0.00023091	NaN	6.2058	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81828			16415	5939	10840	10953							0.07885718368652306
QIGQWNPIF	9	Unmodified	_QIGQWNPIF_					0	0	0			REV__ENSG00000146477|ENST00000275300|SLC22A3	REV__ENSG00000146477|ENST00000275300|SLC22A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2395629882812	2	551.787641	1101.56073	0.49248	0.00027175	0.44497	0.00024553	0.93745	0.00051727	551.7884754163357	62.202	0.39264	62.275	62.142	62.535	0.073421					24	13	2	0	0	0	0.23598	1	13854	13854		15.847	1.2655	1	281300	+		16416	9545	10841	10954	22111	22111					0.0140116268012207
QIIEADEVL	9	Unmodified	_QIIEADEVL_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.277099609375	2	515.276772	1028.53899	0.67042	0.00034545	-0.30024	-0.00015471	0.37017	0.00019074	515.2765232175058	67.111	0.79795	67.111	66.871	67.669	0					54	29	3	0	0	0	0.10543	2	15499	15499;15554		31.268	8.5321	1	623660			16417	3599	10842	10955	22112;22113	22112					0.02586313140909624
QIIEADEVL	9	Unmodified	_QIIEADEVL_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2772827148438	2	515.276772	1028.53899	0.75776	0.00039046	-0.41602	-0.00021436	0.34175	0.00017609	515.2764521976885	67.075	0.79466	67.14	66.871	67.666	0.065071					53	27	3	0	0	0	0.17428	1	15332	15332		21.537	4.4241	1	533450			16418	3599	10842	10955	22114	22114					0.02586313140909624
QIIEEDAAL	9	Unmodified	_QIIEEDAAL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.26123046875	2	501.261122	1000.50769	0.20757	0.00010405	0.22431	0.00011244	0.43188	0.00021648	501.26117295916146	58.153	0.36229	58.153	57.855	58.217	0					37	12	4	0	0	0	0.0016252	2	12800	12774;12800		118.07	21.957	1	2797200			16419	1803	10843	10956	22115;22116	22116					0.007457401068108993
QIIEEDAAL	9	Unmodified	_QIIEEDAAL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.26123046875	2	501.261122	1000.50769	0.06029	3.0221E-05	0.34072	0.00017079	0.40101	0.00020101	501.2611996520476	58.373	0.39574	58.373	58.256	58.652	0					37	14	4	0	0	0	0.11198	1	12881	12881		29.841	8.3036	1	1060800			16420	1803	10843	10956	22117	22117					0.007457401068108993
QIIEEDAAL	9	Unmodified	_QIIEEDAAL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.26116943359375	2	501.261122	1000.50769	0.24244	0.00012153	0.13294	6.6636E-05	0.37538	0.00018816	501.26112385302116	58.152	1.0982	58.222	57.871	58.969	0.070477					86	39	4	0	0	0	0.0046221	3	12623	12623;12668;12716		86.332	10.571	1	2019500			16421	1803	10843	10956	22118;22119;22120	22118					0.007457401068108993
QIIEKDAAL	9	Unmodified	_QIIEKDAAL_					0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7873840332031	2	500.787307	999.560061	-0.32623	-0.00016337	0.58092	0.00029092	0.25468	0.00012754	500.7875158020993	40.755	0.84986	40.755	40.53	41.38	0					72	29	4	0	0	0	0.065576	2	7511	7511;7555		39.95	0	1	481990			16422	3598	10844	10957	22121;22122	22121					0.060263232404167866
QIIEKDAAL	9	Unmodified	_QIIEKDAAL_					0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.787353515625	2	500.787307	999.560061	-0.17223	-8.625E-05	0.552	0.00027643	0.37977	0.00019018	500.7875270374909	40.665	0.68784	40.754	40.493	41.181	0.089645					66	26	4	0	0	0	0.026209	2	7360	7360;7401		53.833	0	1	425620			16423	3598	10844	10957	22123;22124	22123					0.060263232404167866
QIINLKEKF	9	Unmodified	_QIINLKEKF_					0	0	0			REV__tr|U7T2G8|U7T2G8_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00561PE=4SV=1	REV__tr|U7T2G8|U7T2G8_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00561PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2789916992188	2	566.839874	1131.66519	0.29976	0.00016992	0.45838	0.00025983	0.75815	0.00042975	566.8400379167283	67.98	0.26952	67.98	67.857	68.127	0					12	9	2	0	0	0	0.2446	1	15828	15828		7.2892	0	1	66094	+		16424	13265	10845	10958	22125	22125					0.10462864436840391
QIINLKEKF	9	Unmodified	_QIINLKEKF_					0	0	0			REV__tr|U7T2G8|U7T2G8_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00561PE=4SV=1	REV__tr|U7T2G8|U7T2G8_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00561PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2794189453125	2	566.839874	1131.66519	0.51188	0.00029015	-0.082151	-4.6566E-05	0.42972	0.00024358	566.8397722553256	67.956	0.17062	68.02	67.874	68.045	0.063507					9	5	2	0	0	0	0.25174	1	15605	15605		7.2892	0	1	73463	+		16425	13265	10845	10958	22126	22126					0.10462864436840391
QIKQDVLQKL	10	Unmodified	_QIKQDVLQKL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.91534423828125	3	404.915201	1211.72377	0.54081	0.00021898	-0.68285	-0.0002765	-0.14204	-5.7515E-05	404.9149303368634	38.196	0.3154	38.196	38.017	38.332	0					17	10	2	0	0	0	0.46608	1	6765	6765		1.7423	0	1	34119	+		16426	9108	10846	10959	22127	22127					0.12637921011310027
QILLRFLHFP	10	Unmodified	_QILLRFLHFP_					0	0	0			REV__ENST00000486274.5_1_3:99980342-100042509:+|nuORF	REV__ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3853759765625	2	642.384783	1282.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.514	1	93.514	93.014	94.014	0								0	0	0	0.33979	1	23573	23573		0.45834	0	1		+		16427	8015	10847	10960	22128	22128					0.1249453883606293
QILMWSLSN	9	Unmodified	_QILMWSLSN_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.8292846679688	2	546.281334	1090.54812	0.30078	0.00016431	-2.2656	-0.0012376	-1.9648	-0.0010733	546.279739250016	69.53	0.64613	69.592	69.211	69.857	0.062126					40	23	3	0	0	0	0.24635	1	16021	16021		10.824	2.9138	1	141510			16428	2799	10848	10961	22129	22129					0.00646383225603131
QILMWSLSN	9	Unmodified	_QILMWSLSN_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	546.281334	1090.54812	0.54017	0.00029508	-2.3445	-0.0012808	-1.8044	-0.0009857	546.2797175110213	69.561	0.49811	69.561	69.379	69.878	0	-0.015762	-4.0695E-05	NaN	10.824	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162040			16429	2799	10848	10961							0.00646383225603131
QINGEIDLL	9	Unmodified	_QINGEIDLL_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.77685546875	2	507.776939	1013.53933	-0.029311	-1.4883E-05	-1.2113	-0.00061508	-1.2406	-0.00062996	507.7764124564339	90.6	0.57767	90.634	90.329	90.907	0.034065					39	23	2	0	0	0	0.18398	1	22494	22494		20.415	0	1	181330			16430	2907	10849	10962	22130	22130					0.033097328607595955
QIPELPDPSL	10	Unmodified	_QIPELPDPSL_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7979736328125	2	554.797872	1107.58119	0.60821	0.00033743	-0.042839	-2.3767E-05	0.56537	0.00031367	554.7974512164674	74.726	0.43207	74.726	74.579	75.011	0					41	15	3	0	0	0	0.0080344	1	17862	17862		78.06	38.111	1	234540			16431	1275	10850	10963	22131	22131					0.031702885492677524
QIPELPDPSL	10	Unmodified	_QIPELPDPSL_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7977905273438	2	554.797872	1107.58119	0.63055	0.00034983	-0.15998	-8.8754E-05	0.47058	0.00026107	554.7974661313308	74.735	0.49675	74.784	74.593	75.09	0.048546					31	17	3	0	0	0	0.015562	1	17698	17698		71.708	31.758	1	155010			16432	1275	10850	10963	22132	22132					0.031702885492677524
QIQFPLYN	8	Unmodified	_QIQFPLYN_					0	0	0			REV__ENST00000479846.1_1_9:108336602-108337274:+|nuORF	REV__ENST00000479846.1_1_9:108336602-108337274:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7682189941406	2	511.768917	1021.52328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.487	1	24.487	23.987	24.987	0								0	0	0	0.38822	1	2699	2699		0.69038	0	1		+		16433	12075	10851	10964	22133	22133					0.013380714145000638
QIQMLHDSN	9	Unmodified	_QIQMLHDSN_					0	0	0			REV__nc|ENSG00000064102|Q9NVM9-2|INTS13	REV__nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2556762695312	2	543.255848	1084.49714	-0.32676	-0.00017751	0.044326	2.408E-05	-0.28243	-0.00015343	543.2558855033361	18.332	0.85762	18.332	18.233	19.091	0					143	99	3	0	0	0	0.34754	1	1218	1218		0.45834	0	1	55214	+		16434	8090	10852	10965	22134	22134					-0.041725658192717674
QIRLLRILLII	11	Unmodified	_QIRLLRILLII_					0	0	0		ENST00000595463.5_1_19:50414393-50430957:-|nuORF;ENST00000599788.1_2_19:50414393-50432585:-|nuORF;ENST00000596437.5_1_19:50414393-50430957:-|nuORF	ENST00000595463.5_1_19:50414393-50430957:-|nuORF	ENST00000595463.5_1_19:50414393-50430957:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.16412353515625	3	455.321902	1362.94388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.82	1	61.893	61.393	62.393	0.073421								0	0	0	0.34212	1	13774	13774		0	0	1				16435	7284	10853	10966	22135	22135					0.27692191409551015
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.23779296875	2	500.8055	999.596446	-0.35965	-0.00018011	-0.14692	-7.358E-05	-0.50657	-0.00025369	500.80540125658223	42.567	0.52153	42.567	42.395	42.916	0					39	17	3	0	0	0	0.22247	1	8069	8069		20.415	8.1739	1	138020			16436	1128	10854	10967	22136	22136					0.09663200137140393
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2378234863281	2	500.8055	999.596446	-0.20648	-0.00010341	0.23667	0.00011853	0.030196	1.5122E-05	500.8055634454571	42.505	0.4104	42.595	42.401	42.812	0.089764					31	14	3	0	0	0	0.22247	1	7921	7921		20.415	8.1739	1	103460			16437	1128	10854	10967	22137	22137					0.09663200137140393
QITENGEFRNT	11	Unmodified	_QITENGEFRNT_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.87921142578125	3	436.877474	1307.61059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.29	1	32.29	31.79	32.79	0								0	0	0	0.34096	1	4977	4977		0.40827	0.13925	1				16438	5284	10855	10968	22138	22138					-0.030907991725143802
QIVQQASGP	9	Unmodified	_QIVQQASGP_					0	0	0			REV__nc|ENSG00000168067|Q12851-2|MAP4K2	REV__nc|ENSG00000168067|Q12851-2|MAP4K2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.2481994628906	2	464.248349	926.482145	-0.30245	-0.00014041	0.22408	0.00010403	-0.078369	-3.6383E-05	464.2483947888183	28.294	1.1916	28.376	27.998	29.189	0.082132					199	74	4	0	0	0	0.29576	1	3787	3787		7.2892	0	1	1478900	+		16439	10142	10856	10969	22139	22139					0.015963103750436858
QKAQTKEQ	8	Unmodified	_QKAQTKEQ_					0	0	0		MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11	MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.71612548828125	2	480.759081	959.503609	-0.031969	-1.5369E-05	0.41286	0.00019849	0.38089	0.00018312	480.75916102664706	36.664	0.28872	36.746	36.608	36.896	0.081715					20	11	3	0	0	0	0.54097	1	6151	6151		0.69038	0	1	26349			16440	1188;2625	10857	10970	22140	22140					0.022236954037680334
QKDLDYYFAL	10	Unmodified	_QKDLDYYFAL_					0	0	0			REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3	REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.3168334960938	2	638.316428	1274.6183	0.57274	0.00036559	-0.23656	-0.000151	0.33618	0.00021459	638.3162184338713	65.476	1.2561	65.476	65.224	66.48	0					123	45	5	0	0	0	0.44938	1	15164	15164		4.897	0	1	1691700	+		16441	8033	10858	10971	22141	22141					-0.00802039904965568
QKDYQSFTS	9	Unmodified	_QKDYQSFTS_					0	0	0			REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2538452148438	2	552.253828	1102.4931	0.1142	6.3068E-05	-0.10624	-5.8674E-05	0.0079568	4.3941E-06	552.2537496987342	32.45	0.6106	32.524	32.355	32.965	0.07378					73	32	3	0	0	0	0.33704	1	4960	4960		1.8442	0	1	136320	+		16442	13141	10859	10972	22142	22142					-0.05404332041325688
QKEDELSL	8	Unmodified	_QKEDELSL_					0	0	0		ENSG00000214193|ENST00000453908|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2456970214844	2	481.245472	960.476391	-0.080175	-3.8584E-05	0.60462	0.00029097	0.52444	0.00025239	481.2455357733041	52.437	0.59315	52.437	52.219	52.813	0					63	20	4	0	0	0	0.30285	1	11128	11128		34.402	0	1	909490			16443	5565	10860	10973	22143	22143					-0.005428329272717747
QKEFYGEYVL	10	Unmodified	_QKEFYGEYVL_					0	0	0		nc|ENSG00000166261|O95125-2|ZNF202;ENSG00000166261|ENST00000530393|ZNF202	nc|ENSG00000166261|O95125-2|ZNF202	nc|ENSG00000166261|O95125-2|ZNF202	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.3180541992188	2	638.316428	1274.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.372	1	38.372	37.872	38.872	0								0	0	0	0.33916	1	6802	6802		1.1933	0.12188	1				16444	4146	10861	10974	22144	22144					-0.00802039904965568
QKEIEKYVY	9	Unmodified	_QKEIEKYVY_					0	0	0		ENSG00000155890|ENST00000286349|TRIM42	ENSG00000155890|ENST00000286349|TRIM42	ENSG00000155890|ENST00000286349|TRIM42	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3174438476562	2	600.318971	1198.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.927	1	34.003	33.503	34.503	0.076244								0	0	0	0.2927	1	5345	5345		0.52476	0	1				16445	3600	10862	10975	22145	22145					0.03202263957678042
QKEQLNIP	8	Unmodified	_QKEQLNIP_					0	0	0			REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF	REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2716064453125	2	485.271824	968.529095	0.037165	1.8035E-05	-0.16044	-7.7857E-05	-0.12327	-5.9822E-05	485.2717042309958	50.318	0.42563	50.391	50.181	50.607	0.073124					19	14	2	0	0	0	0.53858	1	10304	10304		2.3027	0	1	56154	+		16446	8020	10863	10976	22146	22146					0.0435716992617472
QKESARRPF	9	Unmodified	_QKESARRPF_					0	0	0		nc|ENSG00000125571|Q9NZH6-5|IL37;nc|ENSG00000125571|Q9NZH6-3|IL37;nc|ENSG00000125571|Q9NZH6-2|IL37;nc|ENSG00000125571|Q9NZH6-4|IL37;ENSG00000125571|ENST00000263326|IL37	nc|ENSG00000125571|Q9NZH6-5|IL37	nc|ENSG00000125571|Q9NZH6-5|IL37	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2935180664062	2	559.806897	1117.59924	0.41916	0.00023465	1.355	0.00075853	1.7741	0.00099318	559.8065049957896	55.944	0.093056	56.009	55.946	56.039	0.065128					4	2	2	0	0	0	0.25504	1	11981	11981		4.756	0	1	23045			16447	2298	10864	10977	22147	22147					0.045144683146418174
QKFAIMYFY	9	Unmodified	_QKFAIMYFY_					0	0	0		ENST00000309971.8_1_9:131303445-131303586:+|nuORF	ENST00000309971.8_1_9:131303445-131303586:+|nuORF	ENST00000309971.8_1_9:131303445-131303586:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.86932373046875	3	404.203694	1209.58925	0.21213	8.5742E-05	-0.19478	-7.8731E-05	0.017344	7.0105E-06	404.2036109781006	46.075	0.4286	46.075	45.955	46.384	0					24	14	2	0	0	0	0.25964	1	9142	9142		1.0715	0	1	81676			16448	5995	10865	10978	22148	22148					-0.007158557349384864
QKFFELLQ	8	Unmodified	_QKFFELLQ_					0	0	0			REV__ENST00000520580.5_1_5:65455027-65458421:+|nuORF	REV__ENST00000520580.5_1_5:65455027-65458421:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2938232421875	2	526.792392	1051.57023	0.43501	0.00022916	-0.19581	-0.00010315	0.23919	0.000126	526.7923930034085	80.008	1.3274	80.035	79.648	80.975	0.026428					149	46	6	0	0	0	0.46036	1	19248	19248		18.135	2.2878	1	7414100	+		16449	9701	10866	10979	22149	22149					0.046509309656585174
QKIRSVVAF	9	Unmodified	_QKIRSVVAF_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2;REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.79736328125	2	524.319109	1046.62366	0.17838	9.3528E-05	-0.11593	-6.0786E-05	0.062446	3.2742E-05	524.3190696689489	50.815	0.33868	50.885	50.766	51.105	0.069874					18	12	2	0	0	0	0.25845	1	10488	10488		2.0598	0.40713	1	67421	+		16450	9517;9642	10867	10980	22150	22150					0.10221728468172842
QKKKKKKK	8	Unmodified	_QKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;AluSz6_dup36815|chr15:60362892-60363058:+|3.339432781041445|0.0012375329650786|11.4|522.0|7|3|sense;PHF20L1|p.K576E|1|1.0|ENSG00000129292|chr8:132825353-132825353|A/G|missense_variant;nc|ENSG00000167978|Q9UQ35-3|SRRM2;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;ENST00000323571.8_1_17:38438263-38438389:+|nuORF;AluSc_dup13832|chr7:33006087-33006413:-|2.660605299313354|0.4159080058002372|2.68|521.0|7|2|sense;AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|4|1|sense;ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;SRRM2|p.A921Efs*27|1|0.11|ENSG00000167978|chr16:2763289-2763290|-/AACAAAACTGGAGGCTTCAAACTTC|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25;ENSG00000129292|ENST00000395386|PHF20L1	nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000167978|ENST00000301740|SRRM2;ENSG00000111300|ENST00000261745|NAA25;ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.373779296875	2	522.374218	1042.73388	-0.053999	-2.8208E-05	0.26373	0.00013777	0.20973	0.00010956	522.3742524834804	112.72	0.40703	112.72	112.63	113.04	0					65	49	2	0	0	0	0.54199	1	28881	28881		0	0	1	382870			16451	4247;765;1698;2426	10868	10981	22151	22151					0.2142257352722936
QKKLEDFR	8	Unmodified	_QKKLEDFR_					0	0	0		nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2813720703125	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.831	1	44.831	44.331	45.331	0								0	0	0	0.38822	1	8751	8751		2.3027	0.24298	1				16452	864	10869	10982	22152	22152					0.053405477088290354
QKKVIKKKT	9	Unmodified	_QKKVIKKKT_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;PCLO|p.V5071L|1|0.17|ENSG00000186472|chr7:82760716-82760716|C/A|missense_variant	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8798828125	2	550.879333	1099.74411	0.40774	0.00022461	0.33824	0.00018633	0.74597	0.00041094	550.8792942466314	112.44	0.26534	112.45	112.4	112.67	0.014595					37	28	2	0	0	0	0.34704	1	28735	28735		0.52476	0	1	808070			16453	5079	10870	10983	22153	22153					0.19823136461809554
QKLAERHLR	9	Unmodified	_QKLAERHLR_					0	0	0			REV__ENSG00000104738|ENST00000649973|MCM4	REV__ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.84326171875	2	575.843813	1149.67307	0.34657	0.00019957	-1.278	-0.00073592	-0.93141	-0.00053635	575.8428036821286	88.716	0.56789	88.716	88.486	89.053	0					52	23	3	0	0	0	0.33704	1	22098	22098		1.8442	0	1	180170	+		16454	8511	10871	10984	22154	22154					0.10422436476960684
QKLKQSSKVS	10	Unmodified	_QKLKQSSKVS_					0	0	0			REV__ENSG00000161791|ENST00000335154|FMNL3	REV__ENSG00000161791|ENST00000335154|FMNL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3162841796875	2	566.837862	1131.66117	0.30078	0.00017049	0.63193	0.0003582	0.93271	0.00052869	566.8380923758399	94.223	0.42078	94.261	94.123	94.544	0.038086					27	16	2	0	0	0	0.31811	1	23653	23653		2.9952	0	1	121900	+		16455	9868	10872	10985	22155	22155					0.10060774943144679
QKLSITAATVG	11	Unmodified	_QKLSITAATVG_					0	0	0		ENST00000511170.1_1_4:162473721-162577644:-|nuORF;FSTL5|p.L576Wfs*38|1|0.28|ENSG00000168843|chr4:161455119-161455119|G/-|frameshift_variant;FSTL5|p.I629Nfs*2|1|0.27|ENSG00000168843|chr4:161386405-161386406|-/T|frameshift_variant;FSTL5|p.N690Ifs*4|1|0.24|ENSG00000168843|chr4:161386222-161386222|T/-|frameshift_variant;nc|ENSG00000168843|Q8N475-3|FSTL5;nc|ENSG00000168843|Q8N475-2|FSTL5;ENSG00000168843|ENST00000306100|FSTL5	ENST00000511170.1_1_4:162473721-162577644:-|nuORF	ENST00000511170.1_1_4:162473721-162577644:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2792358398438	2	544.819138	1087.62372	0.23679	0.00012901	-0.20968	-0.00011424	0.027112	1.4771E-05	544.8189763988267	15.439	0.11627	15.511	15.468	15.584	0.072399					19	14	2	0	0	0	0.31102	1	487	487		0	0	1	14396			16456	4309	10873	10986	22156	22156					0.0834168367748589
QKLSITAATVG	11	Unmodified	_QKLSITAATVG_					0	0	0		ENST00000511170.1_1_4:162473721-162577644:-|nuORF;FSTL5|p.L576Wfs*38|1|0.28|ENSG00000168843|chr4:161455119-161455119|G/-|frameshift_variant;FSTL5|p.I629Nfs*2|1|0.27|ENSG00000168843|chr4:161386405-161386406|-/T|frameshift_variant;FSTL5|p.N690Ifs*4|1|0.24|ENSG00000168843|chr4:161386222-161386222|T/-|frameshift_variant;nc|ENSG00000168843|Q8N475-3|FSTL5;nc|ENSG00000168843|Q8N475-2|FSTL5;ENSG00000168843|ENST00000306100|FSTL5	ENST00000511170.1_1_4:162473721-162577644:-|nuORF	ENST00000511170.1_1_4:162473721-162577644:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	544.819138	1087.62372	-0.3723	-0.00020283	0.09741	5.3071E-05	-0.27489	-0.00014976	544.8192694293881	15.468	0.12288	15.468	15.385	15.508	0	-0.021538	0.00017965	NaN	0	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14207			16457	4309	10873	10986							0.0834168367748589
QKLVKTKKK	9	Unmodified	_QKLVKTKKK_					0	0	0			REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8787231445312	2	550.879333	1099.74411	0.41077	0.00022628	-0.084478	-4.6537E-05	0.32629	0.00017975	550.8791180810038	111.95	0.63422	111.97	111.81	112.45	0.014595					187	76	3	0	0	0	0.34754	1	28544	28544		0.45834	0	1	4140300	+		16458	10525	10874	10987	22157	22157					0.19823136461786817
QKLYDRHSS	9	Unmodified	_QKLYDRHSS_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;MYO5B|p.N568Tfs*13|1|0.44|ENSG00000167306|chr18:49953309-49953309|T/-|frameshift_variant	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2892456054688	2	567.288537	1132.56252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.135	1	36.135	35.635	36.635	0								0	0	0	0.2927	1	6128	6128		0.52476	0	1				16459	4205	10875	10988	22158	22158					0.0015417169809097686
QKQNQNPPT	9	Unmodified	_QKQNQNPPT_					0	0	0			REV__ENST00000478980.1_1_2:27256012-27257182:+|nuORF	REV__ENST00000478980.1_1_2:27256012-27257182:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7672729492188	2	527.767437	1053.52032	-0.30294	-0.00015988	0.15893	8.3875E-05	-0.14401	-7.6006E-05	527.7674834723817	21.116	0.43152	21.116	20.933	21.365	0					116	47	3	0	0	0	0.32112	1	1806	1806		3.9444	0.3479	1	69640	+		16460	8862	10876	10989	22159	22159					-0.004298037102898888
QKRERRQKKN	10	Unmodified	_QKRERRQKKN_					0	0	0			REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|17|3|sense	REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|17|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.94287109375	3	457.607764	1369.80146	0.67482	0.0003088	0.46964	0.00021491	1.1445	0.00052372	457.60781129591237	92.505	1.5347	92.505	91.927	93.462	0					141	58	3	0	0	0	0.47119	1	23252	23252		0.77653	0.14971	1	222480	+		16461	12701	10877	10990	22160	22160					0.13135371720068179
QKRGLCTV	8	Unmodified	_QKRGLCTV_					0	0	0		nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;CFLAR|p.E398K|1|0.3|ENSG00000003402|chr2:201160830-201160830|G/A|missense_variant;nc|ENSG00000003402|O15519-7|CFLAR;nc|ENSG00000003402|O15519-3|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.7478332519531	2	452.755287	903.496021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.797	1	35.876	35.376	36.376	0.078827								0	0	0	0.38822	1	5906	5906		2.0598	0	1				16462	331	10878	10991	22161	22161					0.04041264602483352
QKRIAVRL	8	Unmodified	_QKRIAVRL_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.3263854980469	2	492.327268	982.639983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.04	1	113.04	112.54	113.54	0								0	0	0	0.38822	1	28972	28972		2.3027	0	1		+		16463	8064	10879	10992	22162	22162					0.14796854424923822
QKRQKCRW	8	Unmodified	_QKRQKCRW_					0	0	0		nc|ENSG00000141644|Q9UIS9-8|MBD1;nc|ENSG00000141644|Q9UIS9-5|MBD1;nc|ENSG00000141644|Q9UIS9-10|MBD1;nc|ENSG00000141644|Q9UIS9-2|MBD1;ENSG00000141644|ENST00000269468|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1;MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant;nc|ENSG00000141644|Q9UIS9-6|MBD1	nc|ENSG00000141644|Q9UIS9-8|MBD1	nc|ENSG00000141644|Q9UIS9-8|MBD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7743530273438	2	566.811459	1131.60837	0.24446	0.00013856	0.53491	0.00030319	0.77938	0.00044176	566.8117292437071	106.45	0.084045	106.47	106.43	106.51	0.025711					13	9	2	0	0	0	0.3576	1	27245	27245		2.5775	0.27475	1	24101			16464	3072	10880	10993	22163	22163					0.04782538399331315
QKRWQYDVW	9	Unmodified	_QKRWQYDVW_					0	0	0		nc|ENSG00000138031|O60266-2|ADCY3;ENSG00000138031|ENST00000679454|ADCY3	nc|ENSG00000138031|O60266-2|ADCY3	nc|ENSG00000138031|O60266-2|ADCY3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.87939453125	3	436.887645	1307.64111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.826	1	29.902	29.402	30.402	0.075403								0	0	0	0.2941	1	4124	4124		0.23584	0	1				16465	2886	10881	10994	22164	22164					-0.00040975996830638906
QKTFTLLGF	9	Unmodified	_QKTFTLLGF_					0	0	0		MYO5C|p.E305Q|1|0.34|ENSG00000128833|chr15:52269780-52269780|C/G|missense_variant;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.K1417Ffs*20|1|0.14|ENSG00000128833|chr15:52211777-52211778|-/TCTCTTTCTCAACAATGTTTGCTAAATAACTGAA|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C	MYO5C|p.E305Q|1|0.34|ENSG00000128833|chr15:52269780-52269780|C/G|missense_variant	MYO5C|p.E305Q|1|0.34|ENSG00000128833|chr15:52269780-52269780|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.774658203125	2	527.800217	1053.58588	0.57772	0.00030492	-0.1655	-8.735E-05	0.41223	0.00021757	527.8000938342398	54.702	0.23652	54.702	54.635	54.871	0					13	8	2	0	0	0	0.20004	1	11777	11777		16.942	1.0951	1	73389			16466	2411	10882	10995	22165	22165					0.06123217482718246
QKVLLSNEY	9	Unmodified	_QKVLLSNEY_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2979736328125	2	547.298039	1092.58152	0.07126	3.9E-05	0.00097446	5.3332E-07	0.072234	3.9534E-05	547.2980136111821	22.783	0.29609	22.885	22.756	23.052	0.10178					43	27	2	0	0	0	0.33849	2	2104	2104;2141		1.6526	0	1	33332	+		16467	8800	10883	10996	22166;22167	22166					0.0389370826915183
QKWKTKFS	8	Unmodified	_QKWKTKFS_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.8077392578125	2	526.798009	1051.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.773	1	31.773	31.273	32.273	0								0	0	0	0.38822	1	4823	4823		0.69038	0	1				16468	4905	10884	10997	22168	22168					0.05773753059816045
QKWLAEMEM	9	Unmodified	_QKWLAEMEM_					0	0	0		SPTB|p.E868Q|1|0.31|ENSG00000070182|chr14:64793061-64793061|C/G|missense_variant	SPTB|p.E868Q|1|0.31|ENSG00000070182|chr14:64793061-64793061|C/G|missense_variant	SPTB|p.E868Q|1|0.31|ENSG00000070182|chr14:64793061-64793061|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2738647460938	2	583.272652	1164.53075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.8	1	119.8	119.3	120.3	0								0	0	0	0.2927	1	30148	30148		0.52476	0	1				16469	13399	10885	10998	22169	22169					-0.044932803717301795
QKYHYEKLF	9	Unmodified	_QKYHYEKLF_					0	0	0			REV__ENSG00000171150|ENST00000394861|SOCS5	REV__ENSG00000171150|ENST00000394861|SOCS5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.32763671875	2	628.327131	1254.63971	0.10019	6.2954E-05	0.43159	0.00027118	0.53178	0.00033413	628.3274157443689	78.414	0.44582	78.414	78.205	78.651	0					35	14	3	0	0	0	0.24021	1	18975	18975		13.906	0	1	281100	+		16470	10243	10886	10999	22170	22170					0.02257389914416308
QKYHYEKLF	9	Unmodified	_QKYHYEKLF_					0	0	0			REV__ENSG00000171150|ENST00000394861|SOCS5	REV__ENSG00000171150|ENST00000394861|SOCS5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	628.327131	1254.63971	0.10019	6.2954E-05	0.43159	0.00027118	0.53178	0.00033413	628.3274157443689	78.414	0.44582	78.414	78.205	78.651	0	-0.0048146	0.00034805	NaN	13.906	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281100	+		16471	10243	10886	10999							0.02257389914416308
QKYHYEKLF	9	Unmodified	_QKYHYEKLF_					0	0	0			REV__ENSG00000171150|ENST00000394861|SOCS5	REV__ENSG00000171150|ENST00000394861|SOCS5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	628.327131	1254.63971	0.44406	0.00027902	-0.17206	-0.00010811	0.27201	0.00017091	628.3272993551801	78.393	0.54108	78.423	78.171	78.712	0.030159	0.0048146	-0.00041052	NaN	13.906	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265750	+		16472	10243	10886	10999							0.02257389914416308
QKYNLGFAL	9	Unmodified	_QKYNLGFAL_					0	0	0		tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2911987304688	2	527.290017	1052.56548	0.37106	0.00019566	0.07654	4.0359E-05	0.4476	0.00023601	527.2900059709154	74.249	0.71684	74.297	74.071	74.788	0.048546					56	25	3	0	0	0	0.29105	1	17633	17633		7.9102	0	1	657890			16473	13645	10887	11000	22171	22171					0.04130046822888289
QLAALICGLF	10	Unmodified	_QLAALICGLF_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7966918945312	2	524.79662	1047.57869	0.55195	0.00028966	-0.4913	-0.00025783	0.060654	3.1831E-05	524.7963633437344	64.881	0.84451	64.881	64.601	65.446	0					64	30	3	0	0	0	0.19659	1	14823	14823		34.102	3.8776	1	151270			16474	2135	10888	11001	22172	22172					0.05680161610621326
QLAALICGLF	10	Unmodified	_QLAALICGLF_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7968139648438	2	524.79662	1047.57869	0.33526	0.00017595	0.10526	5.5241E-05	0.44053	0.00023119	524.7965208815108	64.779	1.0781	64.848	64.587	65.665	0.068916					66	41	3	0	0	0	0.25965	1	14716	14716		26.884	3.7352	1	301520			16475	2135	10888	11001	22173	22173					0.05680161610621326
QLACMPLDSW	10	Unmodified	_QLACMPLDSW_					0	0	0		ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.25634765625	2	582.264827	1162.5151	0.47245	0.00027509	3.4141	0.0019879	3.8865	0.002263	582.7678104231953	73.324	1.0692	73.377	72.897	73.966	0.052567					86	40	3	0	0	0	0.43972	1	17439	17439		6.7232	1.8262	1	409520			16476	6884	10889	11002	22174	22174					-0.05965566888767171
QLAEYKSR	8	Unmodified	_QLAEYKSR_					0	0	0			REV__ENSG00000198517|ENST00000343242|MAFK	REV__ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2850341796875	2	497.769448	993.524344	0.14504	7.2194E-05	-0.40293	-0.00020057	-0.25789	-0.00012837	497.7692995336001	39.667	0.58992	39.755	39.474	40.064	0.088562					42	22	3	0	0	0	0.53557	1	7113	7113		4.3292	0	1	94723	+		16477	10840	10890	11003	22175	22175					0.027322857834292336
QLASAHAPAW	10	Unmodified	_QLASAHAPAW_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2684936523438	2	526.269616	1050.52468	0.61981	0.00032619	-2.9022	-0.0015273	-2.2824	-0.0012011	526.2680244310928	67.052	0.30907	67.117	67.011	67.32	0.065071					12	10	2	0	0	0	0.45443	1	15373	15373		3.9444	0.3479	1	86747	+		16478	12836	10891	11004	22176	22176					0.001437055032738499
QLDAPPPSVLP	11	Unmodified	_QLDAPPPSVLP_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.774658203125	2	567.313689	1132.61282	0.3888	0.00022057	0.032795	1.8605E-05	0.4216	0.00023918	567.3137146974428	57.41	0.55342	57.41	57.187	57.74	0					43	19	3	0	0	0	0.30993	1	12560	12560		11.518	3.6077	1	221630	+		16479	9054	10892	11005	22177	22177					0.05182281303223135
QLDAPPPSVLP	11	Unmodified	_QLDAPPPSVLP_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	567.313689	1132.61282	0.34866	0.0001978	-0.017906	-1.0158E-05	0.33075	0.00018764	567.3134863832225	57.319	0.51863	57.387	57.206	57.724	0.068375	-0.011414	-3.0325E-05	NaN	11.518	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192840	+		16480	9054	10892	11005							0.05182281303223135
QLDQSTTIANI	11	Unmodified	_QLDQSTTIANI_					0	0	0			REV__FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant	REV__FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.877685546875	3	401.878704	1202.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.632	1	24.729	24.229	25.229	0.096073								0	0	0	0.32823	1	2615	2615		2.2527	0	1		+		16481	8197	10893	11006	22178	22178					0.02107870601344075
QLEATRPL	8	Unmodified	_QLEATRPL_					0	0	0			REV__ENST00000543693.5_1_9:14084662-14084734:-|nuORF	REV__ENST00000543693.5_1_9:14084662-14084734:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.7216491699219	2	464.266542	926.51853	-0.014772	-6.8581E-06	-0.30389	-0.00014109	-0.31866	-0.00014794	464.26624042582176	33.337	0.44636	33.337	33.155	33.601	0					22	16	2	0	0	0	0.35759	1	5279	5279		14.838	0	1	38128	+		16482	12408	10894	11007	22179	22179					0.052331872717559236
QLEATRPL	8	Unmodified	_QLEATRPL_					0	0	0			REV__ENST00000543693.5_1_9:14084662-14084734:-|nuORF	REV__ENST00000543693.5_1_9:14084662-14084734:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	464.266542	926.51853	-0.1992	-9.2482E-05	0.33061	0.00015349	0.13141	6.1008E-05	464.26646250660207	33.25	0.2886	33.324	33.191	33.479	0.074322	-0.0063018	0.00040113	NaN	14.838	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38165	+		16483	12408	10894	11007							0.052331872717559236
QLEEKLTY	8	Unmodified	_QLEEKLTY_					0	0	0		nc|ENSG00000258597|P20848|SERPINA2	nc|ENSG00000258597|P20848|SERPINA2	nc|ENSG00000258597|P20848|SERPINA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.271240234375	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.793	1	13.793	13.293	14.293	0								0	0	0	0.38822	1	271	271		0.69038	0	1				16484	7621	10895	11008	22180	22180					0.01806330486454044
QLEERKRLF	9	Unmodified	_QLEERKRLF_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.91546630859375	3	406.903295	1217.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.027	1	37.027	36.527	37.527	0								0	0	0	0.28514	1	6397	6397		2.086	0.17963	1		+		16485	9922	10896	11009	22181	22181					0.08791883554295055
QLERDQFL	8	Unmodified	_QLERDQFL_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7728881835938	2	524.774731	1047.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.181	1	99.223	98.723	99.723	0.042839								0	0	0	0.38822	1	25139	25139		12.532	0.29089	1		+		16486	8770	10897	11010	22182	22182					0.013042684378433478
QLFFYQLL	8	Unmodified	_QLFFYQLL_					0	0	0			REV__Tigger1_dup10712|chr17:1369700-1370119:-|1.1601934264460736|0.0417893780350381|4.8|510.0|6|1|sense	REV__Tigger1_dup10712|chr17:1369700-1370119:-|1.1601934264460736|0.0417893780350381|4.8|510.0|6|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.8602905273438	2	536.29731	1070.58007	0.60764	0.00032588	-4.2011	-0.002253	-3.5934	-0.0019271	536.294900632765	55.626	0.083771	55.691	55.646	55.73	0.065128					4	2	2	0	0	0	0.3576	1	11892	11892		4.756	0	1	19992	+		16487	13025	10898	11011	22183	22183					0.04760118971034899
QLFRRLKEE	9	Unmodified	_QLFRRLKEE_					0	0	0		GAS2L1|p.E522K|1|0.2|ENSG00000185340|chr22:29312015-29312015|G/A|missense_variant	GAS2L1|p.E522K|1|0.2|ENSG00000185340|chr22:29312015-29312015|G/A|missense_variant	GAS2L1|p.E522K|1|0.2|ENSG00000185340|chr22:29312015-29312015|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.91534423828125	3	406.903295	1217.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.173	1	37.173	36.673	37.673	0								0	0	0	0.28514	1	6441	6441		2.086	0.34373	1				16488	7342	10899	11012	22184	22184					0.08791883554317792
QLGDVRRAWVR	11	Unmodified	_QLGDVRRAWVR_					0	0	0		ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.209228515625	3	452.593343	1354.7582	0.34306	0.00015527	-2.2275	-0.0010081	-1.8844	-0.00085286	452.9267768858178	55.402	0.28179	55.467	55.292	55.574	0.065128					12	10	2	0	0	0	0.311	1	11784	11784		0.50596	0.34663	1	33114			16489	7081	10900	11013	22185	22185					0.09501181942778203
QLGEELGTL	9	Unmodified	_QLGEELGTL_					0	0	0		MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|14|1|anti-sense	MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|14|1|anti-sense	MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|14|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2557373046875	2	480.25584	958.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.326	1	72.326	71.826	72.826	0								0	0	0	0.16196	1	17115	17115		23.79	0	1				16490	7430	10901	11014	22186	22186					0.01621757452392103
QLHALDVWAR	10	Unmodified	_QLHALDVWAR_					0	0	0			REV__nc|ENSG00000174348|Q7Z5L7-4|PODN	REV__nc|ENSG00000174348|Q7Z5L7-4|PODN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.8904724121094	3	403.556007	1207.64619	0.81842	0.00033028	-0.62393	-0.00025179	0.19449	7.8486E-05	403.5557844258935	65.191	0.37137	65.191	64.973	65.344	0					20	12	2	0	0	0	0.46138	1	14937	14937		2.6312	0.54523	1	141190	+		16491	10344	10902	11015	22187	22187					0.050673278657768606
QLILKPDL	8	Unmodified	_QLILKPDL_					0	0	0			REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM	REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2684326171875	2	470.29731	938.580068	0.027992	1.3165E-05	-0.27722	-0.00013038	-0.24923	-0.00011721	470.29693613699635	52.28	0.29308	52.28	52.075	52.368	0					12	9	2	0	0	0	0.3576	1	10956	10956		2.5775	0	1	39144	+		16492	7915	10903	11016	22188	22188					0.10832118971029558
QLKLGWLTH	9	Unmodified	_QLKLGWLTH_					0	0	0			REV__ENST00000528216.5_1_11:3832596-3844152:+|nuORF	REV__ENST00000528216.5_1_11:3832596-3844152:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3184204101562	2	548.319109	1094.62366	0.3482	0.00019092	-1.1478	-0.00062935	-0.79959	-0.00043843	548.3181790921928	109.91	0.11363	109.93	109.88	109.99	0.017235					50	16	4	0	0	0	0.25845	1	28104	28104		2.0598	0	1	5512800	+		16493	12340	10904	11017	22189	22189					0.08013728468154113
QLKRKILIKH	10	Unmodified	_QLKRKILIKH_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.9315185546875	2	638.932431	1275.85031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.6	1	111.6	111.1	112.1	0								0	0	0	0.33892	1	28570	28570		1.4819	1.0812	1				16494	2242	10905	11018	22190	22190					0.22341892027111498
QLKRKILIKH	10	Unmodified	_QLKRKILIKH_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.9326171875	2	638.932431	1275.85031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.62	1	111.63	111.13	112.13	0.015678								0	0	0	0.33984	1	28457	28457		0.40072	0.40072	1				16495	2242	10905	11018	22191	22191					0.22341892027111498
QLLEYEASA	9	Unmodified	_QLLEYEASA_					0	0	0		nc|ENSG00000254986|Q9NY33-2|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3	nc|ENSG00000254986|Q9NY33-2|DPP3	nc|ENSG00000254986|Q9NY33-2|DPP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2527465820312	2	512.253297	1022.49204	0.22414	0.00011482	-1.1286	-0.00057814	-0.90447	-0.00046332	512.252424109851	58.175	0.28198	58.175	57.935	58.217	0					22	9	3	0	0	0	0.05573	1	12795	12795		42.095	0	1	376440			16496	5697	10906	11019	22192	22192					-0.01830546410246825
QLLEYEASA	9	Unmodified	_QLLEYEASA_					0	0	0		nc|ENSG00000254986|Q9NY33-2|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3	nc|ENSG00000254986|Q9NY33-2|DPP3	nc|ENSG00000254986|Q9NY33-2|DPP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2523803710938	2	512.253297	1022.49204	0.24812	0.0001271	-1.3415	-0.00068721	-1.0934	-0.00056011	512.2523852201025	58.208	0.65049	58.279	57.943	58.593	0.070477					31	23	3	0	0	0	0.12809	1	12672	12672		26.884	0	1	261280			16497	5697	10906	11019	22193	22193					-0.01830546410246825
QLLIIKKRQE	10	Unmodified	_QLLIIKKRQE_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9061889648438	2	634.906079	1267.79761	0.24468	0.00015535	0.15891	0.00010089	0.40359	0.00025624	634.9066336567561	108.11	0.10132	108.13	108.07	108.17	0.022224					33	15	3	0	0	0	0.46746	1	27667	27667		1.4819	0	1	5479000	+		16498	8116	10907	11020	22194	22194					0.17441889173665004
QLLLEEEI	8	Unmodified	_QLLLEEEI_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.77435302734375	2	493.773865	985.533177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.654	1	73.706	73.206	74.206	0.052574								0	0	0	0.38822	1	17367	17367		4.756	0	1		+		16499	9083	10908	11021	22195	22195					0.039832146292383186
QLLPHQELF	9	Unmodified	_QLLPHQELF_					0	0	0			REV__nc|ENSG00000105173|P24864-2|CCNE1	REV__nc|ENSG00000105173|P24864-2|CCNE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8078002929688	2	562.808574	1123.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.444	1	20.444	19.944	20.944	0								0	0	0	0.2927	1	1611	1611		0.52476	0	1		+		16500	8530	10909	11022	22196	22196					0.04573718368646951
QLLPPLFF	8	Unmodified	_QLLPPLFF_					0	0	0		nc|ENSG00000113520|P05112-2|IL4;ENSG00000113520|ENST00000231449|IL4	nc|ENSG00000113520|P05112-2|IL4	nc|ENSG00000113520|P05112-2|IL4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7909240722656	2	487.789121	973.56369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.173	1	77.207	76.707	77.707	0.034485								0	0	0	0.38822	1	18443	18443		2.8892	0	1				16501	1804	10910	11023	22197	22197					0.0758503780494948
QLNPAAREF	9	Unmodified	_QLNPAAREF_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;ENST00000472398.5_1_21:38529111-38558109:+|nuORF	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7737426757812	2	523.274898	1044.53524	0.43768	0.00022903	0.28264	0.0001479	0.72032	0.00037692	523.7765619976867	60.591	0.68827	60.591	60.282	60.971	0					55	24	3	0	0	0	0.25174	1	13511	13511		7.2892	2.5332	1	269720			16502	4886	10911	11024	22198	22198					0.014756881576886371
QLNSVESTGRA	11	Unmodified	_QLNSVESTGRA_					0	0	0			REV__nc|ENSG00000149150|O75387-2|SLC43A1	REV__nc|ENSG00000149150|O75387-2|SLC43A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2962646484375	2	581.296559	1160.57856	0.036179	2.1031E-05	0.44672	0.00025968	0.4829	0.00028071	581.2969374463323	33.023	0.60821	33.023	32.856	33.464	0					48	23	3	0	0	0	0.33846	2	5177	5177;5225		13.615	0	1	141530	+		16503	12809	10912	11025	22199;22200	22199					0.00469833144347831
QLNSVESTGRA	11	Unmodified	_QLNSVESTGRA_					0	0	0			REV__nc|ENSG00000149150|O75387-2|SLC43A1	REV__nc|ENSG00000149150|O75387-2|SLC43A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.296630859375	2	581.296559	1160.57856	0.17354	0.00010088	0.42666	0.00024802	0.6002	0.0003489	581.2969218916453	33.012	0.5886	33.087	32.891	33.479	0.074322					49	23	3	0	0	0	0.40977	1	5103	5103		2.086	0	1	95290	+		16504	12809	10912	11025	22201	22201					0.00469833144347831
QLPDKWQHDLF	11	Unmodified	_QLPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.2417907714844	3	476.241976	1425.7041	0.19445	9.2608E-05	-0.17959	-8.5529E-05	0.014862	7.0781E-06	476.2417528568086	57.478	0.41233	57.478	57.267	57.679	0					35	14	3	0	0	0	0.19857	1	12583	12583		30.431	20.116	1	249510			16505	4933	10913	11026	22202	22202					0.008275450005612583
QLPDKWQHDLF	11	Unmodified	_QLPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2421875	3	476.241976	1425.7041	0.10978	5.2282E-05	-0.11845	-5.6411E-05	-0.008669	-4.1285E-06	476.24176288025217	57.357	0.56887	57.425	57.233	57.802	0.068371					46	21	3	0	0	0	0.37654	1	12424	12424		9.2438	4.8376	1	212790			16506	4933	10913	11026	22203	22203					0.008275450005612583
QLPHPLARFQI	11	Unmodified	_QLPHPLARFQI_					0	0	0		TCTN2|p.T631A|1|0.15|ENSG00000168778|chr12:123706847-123706847|A/G|missense_variant	TCTN2|p.T631A|1|0.15|ENSG00000168778|chr12:123706847-123706847|A/G|missense_variant	TCTN2|p.T631A|1|0.15|ENSG00000168778|chr12:123706847-123706847|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.5909423828125	3	440.59094	1318.75099	0.62297	0.00027447	-0.53391	-0.00023524	0.08906	3.9239E-05	440.5906652317778	60.258	1.0652	60.258	60.069	61.135	0					88	38	3	0	0	0	0.31528	1	13423	13423		16.275	0.53592	1	542890			16507	13428	10914	11027	22204	22204					0.1043644934236454
QLPPSDFHW	9	Unmodified	_QLPPSDFHW_					0	0	0		ENSG00000069248|ENST00000261396|NUP133;ENST00000366678.4_1_1:229634943-229644011:-|nuORF;NUP133|p.T387Mfs*2|1|0.39|ENSG00000069248|chr1:229489989-229489989|G/-|frameshift_variant	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7825317382812	2	563.769448	1125.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.388	1	86.413	85.913	86.913	0.025169								0	0	0	0.25692	1	21248	21248		7.9102	0	1				16508	744	10915	11028	22205	22205					-0.03339714216599532
QLPVVVFTF	9	Unmodified	_QLPVVVFTF_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3046875	2	525.305136	1048.59572	0.21851	0.00011478	0.054132	2.8436E-05	0.27264	0.00014322	525.3049670462178	95.454	0.30772	95.454	95.253	95.56	0					22	12	3	0	0	0	0.27929	1	24177	24177		9.3831	3.1773	1	242670			16509	5466	10916	11029	22206	22206					0.07336405488081255
QLPVVVFTF	9	Unmodified	_QLPVVVFTF_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.305136	1048.59572	0.092104	4.8382E-05	0.49836	0.00026179	0.59046	0.00031017	525.3053903150134	95.417	0.27644	95.456	95.264	95.54	0.038872	0.00096751	0.00018491	NaN	9.3831	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196550			16510	5466	10916	11029							0.07336405488081255
QLQLLIKKW	9	Unmodified	_QLQLLIKKW_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.7904663085938	2	585.373884	1168.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.397	1	29.475	28.975	29.975	0.078287								0	0	0	0.2927	1	3996	3996		0.52476	0	1				16511	3621	10917	11030	22207	22207					0.1555973408749196
QLQPQEPQI	9	Unmodified	_QLQPQEPQI_					0	0	0		ENSG00000241058|ENST00000377304|NSUN6	ENSG00000241058|ENST00000377304|NSUN6	ENSG00000241058|ENST00000377304|NSUN6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.787353515625	2	540.787838	1079.56112	0.32472	0.0001756	-2.8284	-0.0015296	-2.5037	-0.001354	540.7875991865754	38.463	0.60471	38.463	38.239	38.844	0					32	21	2	0	0	0	0.30757	1	6879	6879		5.7319	0	1	35620			16512	5646	10918	11031	22208	22208					0.024525376093151863
QLQQLREVLR	10	Unmodified	_QLQQLREVLR_					0	0	0		nc|ENSG00000058453|Q5TZA2-2|CROCC;CROCC|p.L1854Rfs*2|1|0.12|ENSG00000058453|chr1:16970362-16970375|TGGCTCAGCTGGAA/-|frameshift_variant;ENSG00000058453|ENST00000375541|CROCC;ENST00000465291.1_1_1:17296285-17297265:+|nuORF	nc|ENSG00000058453|Q5TZA2-2|CROCC	nc|ENSG00000058453|Q5TZA2-2|CROCC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3843994140625	2	641.883136	1281.75172	0.38724	0.00024857	-0.86866	-0.00055758	-0.48142	-0.00030902	641.8824413311361	93.525	0.60059	93.563	93.22	93.82	0.037369					35	24	2	0	0	0	0.47318	1	23423	23423		0.40072	0	1	67744			16513	247	10919	11032	22209	22209					0.12211243991396259
QLRHCPLQL	9	Unmodified	_QLRHCPLQL_					0	0	0			REV__ENST00000399543.1_1_5:43042205-43042844:+|nuORF	REV__ENST00000399543.1_1_5:43042205-43042844:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3086547851562	2	554.308218	1106.60188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.739	1	95.739	95.239	96.239	0								0	0	0	0.24643	1	24249	24249		10.074	2.1638	1		+		16514	11749	10920	11033	22210	22210					0.052846004479533804
QLRHHLPE	8	Unmodified	_QLRHHLPE_					0	0	0		ENSG00000176009|ENST00000531618|ASCL3	ENSG00000176009|ENST00000531618|ASCL3	ENSG00000176009|ENST00000531618|ASCL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8004150390625	2	515.283057	1028.55156	0.46906	0.0002417	2.2328	0.0011505	2.7019	0.0013922	515.2839109959626	63.491	0.23075	63.562	63.444	63.674	0.071014					9	7	2	0	0	0	0.3576	1	14268	14268		8.5933	0	1	43593			16515	4645	10921	11034	22211	22211					0.038428141144549954
QLRHHVPH	8	Unmodified	_QLRHHVPH_					0	0	0			REV__ENST00000381278.3_1_22:43089799-43091637:-|nuORF	REV__ENST00000381278.3_1_22:43089799-43091637:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.283935546875	2	512.283392	1022.55223	-0.25972	-0.00013305	-0.78285	-0.00040104	-1.0426	-0.00053409	512.282995774206	22.005	0.26802	22.005	21.9	22.169	0					30	24	2	0	0	0	0.54097	2	2014	2014;2028		0.69038	0	1	16491	+		16516	11671	10922	11035	22212;22213	22212					0.041856535541683115
QLRQDVCLCQP	11	Unmodified	_QLRQDVCLCQP_					0	0	0			REV__ENST00000361906.7_1_22:38616937-38617486:-|nuORF	REV__ENST00000361906.7_1_22:38616937-38617486:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8823547363281	3	434.881285	1301.62203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.149	1	64.149	63.649	64.649	0								0	0	0	0.33621	1	14625	14625		2.084	0.62885	1		+		16517	11544	10923	11036	22214	22214					-0.016720166743880327
QLSCCALTTKT	11	Unmodified	_QLSCCALTTKT_					0	0	0			REV__ENST00000551843.5_1_12:92380228-92380465:-|nuORF	REV__ENST00000551843.5_1_12:92380228-92380465:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7891845703125	2	584.788666	1167.56278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.265	1	23.366	22.866	23.866	0.10178								0	0	0	0.34212	1	2244	2244		0	0	1		+		16518	12439	10924	11037	22215	22215					-0.014299126886271551
QLSQRPLAA	9	Unmodified	_QLSQRPLAA_					0	0	0			REV__ENST00000372839.7_2_20:43514450-43530188:+|nuORF	REV__ENST00000372839.7_2_20:43514450-43530188:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2854309082031	2	492.285266	982.555979	0.32157	0.0001583	0.16455	8.1004E-05	0.48612	0.00023931	492.28521283340655	88.901	0.80553	88.934	88.679	89.485	0.032265					67	31	3	0	0	0	0.3182	1	22073	22073		4.3292	0.38484	1	753060	+		16519	11612	10925	11038	22216	22216					0.06400278537353188
QLSVDEQVLV	10	Unmodified	_QLSVDEQVLV_					0	0	0			REV__ENSG00000188996|ENST00000380907|HUS1B	REV__ENSG00000188996|ENST00000380907|HUS1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3074340820312	2	565.308603	1128.60265	-0.62249	-0.0003519	-0.99486	-0.0005624	-1.6174	-0.0009143	565.3080830301964	41.653	0.19532	41.653	41.55	41.745	0					10	7	2	0	0	0	0.46827	1	7803	7803		1.3295	0	1	33196	+		16520	10787	10926	11039	22217	22217					0.043496735779854134
QLSVDEQVLV	10	Unmodified	_QLSVDEQVLV_					0	0	0			REV__ENSG00000188996|ENST00000380907|HUS1B	REV__ENSG00000188996|ENST00000380907|HUS1B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	565.308603	1128.60265	-0.62249	-0.0003519	-0.99486	-0.0005624	-1.6174	-0.0009143	565.3080830301964	41.653	0.19532	41.653	41.55	41.745	0	-0.008841	1.3024E-05	NaN	1.3295	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33196	+		16521	10787	10926	11039							0.043496735779854134
QLSVDEQVLV	10	Unmodified	_QLSVDEQVLV_					0	0	0			REV__ENSG00000188996|ENST00000380907|HUS1B	REV__ENSG00000188996|ENST00000380907|HUS1B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	565.308603	1128.60265	-0.42654	-0.00024113	-1.0816	-0.00061146	-1.5082	-0.00085258	565.3077510617211	41.581	0.17989	41.671	41.556	41.735	0.089764	0.008841	-8.5082E-05	NaN	1.3295	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41326	+		16522	10787	10926	11039							0.043496735779854134
QLTAMCWMR	9	Unmodified	_QLTAMCWMR_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2619018554688	2	570.261565	1138.50858	0.10949	6.2438E-05	-0.29902	-0.00017052	-0.18953	-0.00010808	570.2615141296103	35.358	0.69516	35.437	35.122	35.817	0.078831					31	26	2	0	0	0	0.33849	1	5740	5740		1.6526	0	1	25541			16523	1346	10927	11040	22218	22218					-0.05513783321134724
QLTVVPGWF	9	Unmodified	_QLTVVPGWF_					0	0	0			REV__ENST00000461986.5_1_1:78183501-78187881:-|nuORF	REV__ENST00000461986.5_1_1:78183501-78187881:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7985229492188	2	523.78711	1045.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.703	1	56.769	56.269	57.269	0.066452								0	0	0	0.25361	1	12220	12220		8.5933	0	1		+		16524	8210	10928	11041	22219	22219					0.038709483112370435
QLWLDQQSAW	10	Unmodified	_QLWLDQQSAW_					0	0	0			REV__ENSG00000153404|ENST00000637938|PLEKHG4B	REV__ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.8251953125	2	637.811845	1273.60914	0.39291	0.00025061	-0.59059	-0.00037669	-0.19768	-0.00012608	637.8113545238472	87.907	0.68458	87.907	87.455	88.139	0					35	24	2	0	0	0	0.31834	1	21775	21775		1.6526	0	1	98009	+		16525	9695	10929	11042	22220	22220					-0.016723884706152603
QLWLLFEFP	9	Unmodified	_QLWLLFEFP_					0	0	0		ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.324462890625	2	596.823692	1191.63283	0.21803	0.00013013	2.8311	0.0016897	3.0492	0.0018198	596.8253923456224	96.45	0.17787	96.49	96.455	96.632	0.039772					11	9	2	0	0	0	0.25875	1	24326	24326		1.8442	0.19162	1	94620			16526	1436	10930	11043	22221	22221					0.04468077033834561
QLWSVQGERGG	11	Unmodified	_QLWSVQGERGG_					0	0	0		ENST00000540816.1_7:1580595-1581193:+|nuORF;ENST00000343242.8_1_7:1580346-1581177:+|nuORF	ENST00000540816.1_7:1580595-1581193:+|nuORF	ENST00000540816.1_7:1580595-1581193:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.21923828125	3	406.207155	1215.59963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.43	1	28.512	28.012	29.012	0.082134								0	0	0	0.33897	1	3711	3711		1.1098	0.14748	1				16527	6093	10931	11044	22222	22222					0.0004584324383358762
QLYKWVPD	8	Unmodified	_QLYKWVPD_					0	0	0			REV__ENST00000481663.1_1_3:148801501-148804285:-|nuORF	REV__ENST00000481663.1_1_3:148801501-148804285:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7244262695312	2	524.776742	1047.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.46	1	79.46	78.96	79.96	0								0	0	0	0.38822	1	19298	19298		2.3027	0	1		+		16528	8159	10932	11045	22223	22223					0.01706357931561797
QLYWGGKSL	9	Unmodified	_QLYWGGKSL_					0	0	0		ENST00000482281.6_1_12:111073707-111073935:+|nuORF	ENST00000482281.6_1_12:111073707-111073935:+|nuORF	ENST00000482281.6_1_12:111073707-111073935:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2822265625	2	526.282192	1050.54983	0.31343	0.00016495	-0.74817	-0.00039375	-0.43474	-0.00022879	526.2817619695279	63.161	1.8065	63.233	62.805	64.611	0.072701					187	68	4	0	0	0	0.11547	1	14538	14538		29.082	1.4528	1	6142600			16529	6758	10933	11046	22224	22224					0.026577603058512977
QMEEDILQL	9	Unmodified	_QMEEDILQL_					0	0	0		ENSG00000130173|ENST00000252453|ANGPTL8	ENSG00000130173|ENST00000252453|ANGPTL8	ENSG00000130173|ENST00000252453|ANGPTL8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2745971679688	2	559.773539	1117.53253	-0.064148	-3.5909E-05	-1.3958	-0.00078135	-1.46	-0.00081726	559.7724689566993	40.154	1.0339	40.154	39.496	40.53	0					64	36	2	0	0	0	0.17428	1	7345	7345		21.537	3.402	1	178060			16530	2455	10934	11047	22225	22225					-0.02153948082104762
QMFHAHWFC	9	Unmodified	_QMFHAHWFC_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2941284179688	2	603.752221	1205.48989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.387	1	16.465	15.965	16.965	0.077806								0	0	0	0.29525	1	653	653		0	0	1				16531	2499	10935	11048	22226	22226					-0.10463576900679072
QMKKLIKQKQW	11	Unmodified	_QMKKLIKQKQW_					0	0	0		ENST00000507394.1_1_4:100479199-100480495:-|nuORF;ENSG00000145331|ENST00000394876|TRMT10A	ENST00000507394.1_1_4:100479199-100480495:-|nuORF	ENST00000507394.1_1_4:100479199-100480495:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.95904541015625	3	486.958635	1457.85407	0.072744	3.5423E-05	0.95386	0.00046449	1.0266	0.00049992	486.95900245442607	95.64	0.55954	95.64	95.575	96.134	0					36	28	2	0	0	0	0.4185	1	24220	24220		0.094841	0	1	143340			16532	3243	10936	11049	22227	22227					0.14346193738674629
QMTAYMRF	8	Unmodified	_QMTAYMRF_					0	0	0			REV__ENST00000358550.6_1_14:72053172-72053421:+|nuORF	REV__ENST00000358550.6_1_14:72053172-72053421:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2401733398438	2	524.241155	1046.46776	-0.50599	-0.00026526	-0.40101	-0.00021022	-0.907	-0.00047548	524.2407361588982	41.681	0.39731	41.771	41.596	41.994	0.089764					30	15	3	0	0	0	0.50159	1	7667	7667		12.532	0	1	132900	+		16533	11519	10937	11050	22228	22228					-0.053618013690993394
QNALRREP	8	Unmodified	_QNALRREP_					0	0	0		ENST00000601807.5_2_19:49952902-49954779:-|nuORF	ENST00000601807.5_2_19:49952902-49954779:-|nuORF	ENST00000601807.5_2_19:49952902-49954779:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7590637207031	2	492.27269	982.530826	0.1108	5.4543E-05	0.27798	0.00013684	0.38878	0.00019139	492.27283324114387	20.581	0.1955	20.681	20.618	20.814	0.099499					35	22	2	0	0	0	0.53026	1	1541	1541		7.9102	0.62092	1	19672			16534	7298	10938	11051	22229	22229					0.03886223734787109
QNESFYFF	8	Unmodified	_QNESFYFF_					0	0	0			REV__ENST00000535179.1_1_12:14619386-14628955:+|nuORF	REV__ENST00000535179.1_1_12:14619386-14628955:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2384033203125	2	541.234907	1080.45526	0.13765	7.4503E-05	-0.89852	-0.00048631	-0.76087	-0.00041181	541.2344646195812	35.333	0.61353	35.333	35.062	35.675	0					54	21	4	0	0	0	0.53817	1	5923	5923		2.5775	0.27475	1	59250	+		16535	12380	10939	11052	22230	22230					-0.08174798236154857
QNEVWLLMSGP	11	Unmodified	_QNEVWLLMSGP_					0	0	0			REV__ENST00000475358.1_1_10:95097388-95099921:-|nuORF	REV__ENST00000475358.1_1_10:95097388-95099921:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3167114257812	2	637.315906	1272.61726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.13	1	42.22	41.72	42.72	0.089764								0	0	0	0.33362	1	7808	7808		2.9952	0.26005	1		+		16536	12049	10940	11053	22231	22231					-0.008145775455204785
QNFYLKSVFI	10	Unmodified	_QNFYLKSVFI_					0	0	0		ENSG00000178338|ENST00000322434|ZNF354B	ENSG00000178338|ENST00000322434|ZNF354B	ENSG00000178338|ENST00000322434|ZNF354B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.30712890625	2	629.845156	1257.67576	0.11115	7.0005E-05	2.4484	0.0015421	2.5596	0.0016121	630.348111301354	78.433	0.17885	78.433	78.361	78.54	0					8	5	2	0	0	0	0.31794	1	18965	18965		3.5965	0.31518	1	53911			16537	4740	10941	11054	22232	22232					0.05722847091283256
QNILNGAKYRW	11	Unmodified	_QNILNGAKYRW_					0	0	0			REV__ENST00000574998.5_1_16:14186646-14234409:+|nuORF	REV__ENST00000574998.5_1_16:14186646-14234409:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2484436035156	3	454.914083	1361.72042	0.19479	8.8611E-05	-0.099794	-4.5398E-05	0.094993	4.3214E-05	455.2483591670988	52.429	1.0813	52.496	51.829	52.911	0.067173					86	41	5	0	0	0	0.3996	1	10939	10939		4.4062	0.81909	1	383160	+		16538	12534	10942	11055	22233	22233					0.0540267095730087
QNKKKLVR	8	Unmodified	_QNKKKLVR_					0	0	0			REV__ENST00000339438.10_1_1:115282507-115292512:-|nuORF	REV__ENST00000339438.10_1_1:115282507-115292512:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.334716796875	2	507.33255	1012.65055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.41	1	109.43	108.93	109.93	0.019402								0	0	0	0.38822	1	27978	27978		5.2307	1.2863	1		+		16539	11454	10943	11056	22234	22234					0.1447283707935867
QNKPPGFI	8	Unmodified	_QNKPPGFI_					0	0	0		ENST00000410023.5_1_2:102781350-102781467:+|nuORF	ENST00000410023.5_1_2:102781350-102781467:+|nuORF	ENST00000410023.5_1_2:102781350-102781467:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.749267578125	2	450.750527	899.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.553	1	43.553	43.053	44.053	0								0	0	0	0.38822	1	8366	8366		2.5775	0.27475	1				16540	6401	10944	11057	22235	22235					0.03273819588616789
QNLERQVL	8	Unmodified	_QNLERQVL_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2823791503906	2	500.282723	998.550893	0.36367	0.00018194	-0.595	-0.00029767	-0.23133	-0.00011573	500.28246596364136	38.098	0.8086	38.184	37.934	38.743	0.085922					53	29	3	0	0	0	0.33473	1	6572	6572		30.225	0	1	192400			16541	2514	10945	11058	22236	22236					0.051559746747557256
QNNEKNISCV	10	Unmodified	_QNNEKNISCV_					0	0	0		ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7720336914062	2	574.771862	1147.52917	0.17018	9.7818E-05	-0.35452	-0.00020377	-0.18433	-0.00010595	574.7721793678236	51.463	3.1824	51.463	50.981	54.164	0					259	115	5	0	0	0	0.29844	2	10893	10704;10893		22.736	2.2827	1	1793800			16542	2667	10946	11059	22237;22238	22238					-0.03869198136112573
QNNFVGSNLD	10	Unmodified	_QNNFVGSNLD_					0	0	0			REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF	REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.75927734375	2	554.256902	1106.49925	0.52517	0.00029108	1.6368	0.00090721	2.162	0.0011983	554.7592678842414	105.95	0.07666	105.98	105.94	106.01	0.029732					9	8	2	0	0	0	0.46899	1	27123	27123		1.1933	0.39971	1	47730	+		16543	8359	10947	11060	22239	22239					-0.049738138098064155
QNQQFQIN	8	Unmodified	_QNQQFQIN_					0	0	0		ENSG00000102683|ENST00000218867|SGCG	ENSG00000102683|ENST00000218867|SGCG	ENSG00000102683|ENST00000218867|SGCG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.26123046875	2	510.24888	1018.48321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.118	1	53.118	52.618	53.618	0								0	0	0	0.38822	1	11261	11261		13.508	4.1604	1				16544	1321	10948	11061	22240	22240					-0.02529475256051228
QNRERPLL	8	Unmodified	_QNRERPLL_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2704467773438	2	513.296165	1024.57778	0.39511	0.00020281	1.5447	0.0007929	1.9398	0.00099571	513.2971237198941	47.179	0.6666	47.262	46.91	47.577	0.083092					43	25	3	0	0	0	0.3576	1	9242	9242		2.8892	0	1	97526			16545	613	10949	11062	22241	22241					0.06647083285952249
QNSPVVEVWD	10	Unmodified	_QNSPVVEVWD_					0	0	0		ENST00000479187.5_1_12:40692272-40758932:+|nuORF;ENSG00000188906|ENST00000298910|LRRK2	ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENST00000479187.5_1_12:40692272-40758932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7852172851562	2	586.782753	1171.55095	0.83732	0.00049133	2.6663	0.0015646	3.5036	0.0020559	586.7841148622903	100.19	0.44977	100.23	100.05	100.5	0.042839					33	22	2	0	0	0	0.44938	1	25482	25482		4.897	0.95262	1	97545			16546	5180	10950	11063	22242	22242					-0.0279607011589178
QNVRKKKEKK	10	Unmodified	_QNVRKKKEKK_					0	0	0			REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.4058227539062	2	643.406778	1284.799	0.3589	0.00023092	-1.0321	-0.00066405	-0.67319	-0.00043313	643.4060642228344	101.31	0.26079	101.35	101.2	101.46	0.042656					23	14	2	0	0	0	0.47318	2	25779	25779;25819		0.40072	0.050084	1	101120	+		16547	11301	10951	11064	22243;22244	22243					0.16799523262397997
QPADAERAL	9	Unmodified	_QPADAERAL_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000070756|ENST00000318607|PABPC1	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7511901855469	2	485.751256	969.487959	-0.35767	-0.00017374	0.19291	9.3704E-05	-0.16476	-8.0035E-05	485.7513513767215	30.534	1.3546	30.534	30.243	31.597	0					160	69	4	0	0	0	0.004443	4	4457	4418;4457;4497;4601		93.166	39.333	1	1342700			16548	1045	10952	11065	22245;22246;22247;22248	22246					0.0019940888670362256
QPADAERAL	9	Unmodified	_QPADAERAL_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000070756|ENST00000318607|PABPC1	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7511901855469	2	485.751256	969.487959	-0.31246	-0.00015178	0.21264	0.00010329	-0.099818	-4.8487E-05	485.75133134372976	30.471	1.1628	30.546	30.295	31.458	0.075403					173	64	5	0	0	0	0.012041	6	4319	4278;4319;4354;4402;4476;4486		63.961	29.559	1	1084600			16549	1045	10952	11065	22249;22250;22251;22252;22253;22254	22250					0.0019940888670362256
QPAQASQPSI	10	Unmodified	_QPAQASQPSI_					0	0	0			REV__ENSG00000013364|ENST00000357402|MVP	REV__ENSG00000013364|ENST00000357402|MVP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7650146484375	2	513.764363	1025.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.782	1	75.782	75.282	76.282	0								0	0	0	0.33094	1	18173	18173		10.8	2.8894	1		+		16550	7988	10953	11066	22255	22255					0.0024367805817746557
QPDDHAATTSL	11	Unmodified	_QPDDHAATTSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.267333984375	2	578.267467	1154.52038	-0.060069	-3.4736E-05	0.021664	1.2527E-05	-0.038405	-2.2209E-05	578.2674180787357	32.079	0.82791	32.079	31.753	32.581	0					94	34	4	0	0	0	0.22821	1	4905	4905		26.268	10.119	1	229290			16551	1213	10954	11067	22256	22256					-0.05069848500943408
QPDDHAATTSL	11	Unmodified	_QPDDHAATTSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2676391601562	2	578.267467	1154.52038	0.02954	1.7082E-05	0.0148	8.5585E-06	0.04434	2.564E-05	578.2674196766623	32.015	0.78968	32.089	31.812	32.602	0.07378					97	38	4	0	0	0	0.38057	3	4761	4761;4804;4846		8.7454	2.0222	1	190280			16552	1213	10954	11067	22257;22258;22259	22257					-0.05069848500943408
QPDDLINQL	9	Unmodified	_QPDDLINQL_					0	0	0		ENST00000513627.1_1_5:175921035-175923719:+|nuORF;ENSG00000113194|ENST00000261942|FAF2	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2723388671875	2	528.272021	1054.52949	0.36132	0.00019088	-0.053515	-2.8271E-05	0.30781	0.0001626	528.2719440416255	67.999	0.54438	67.999	67.832	68.377	0					40	19	3	0	0	0	0.0084662	2	15795	15795;15848		71.922	19.654	1	315860			16553	1789	10955	11068	22260;22261	22260					0.004405448553598035
QPDDLINQL	9	Unmodified	_QPDDLINQL_					0	0	0		ENST00000513627.1_1_5:175921035-175923719:+|nuORF;ENSG00000113194|ENST00000261942|FAF2	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.271240234375	2	528.272021	1054.52949	0.50641	0.00026752	-0.41722	-0.00022041	0.089194	4.7119E-05	528.2716954543093	67.956	0.53877	68.019	67.845	68.383	0.063507					38	19	3	0	0	0	0.0084662	2	15628	15628;15692		71.922	20.292	1	257150			16554	1789	10955	11068	22262;22263	22262					0.004405448553598035
QPDNIKALF	9	Unmodified	_QPDNIKALF_					0	0	0		nc|ENSG00000105701|Q14318-3|FKBP8;ENST00000544835.7_1_19:18642981-18654375:-|nuORF;nc|ENSG00000105701|Q14318|FKBP8;ENSG00000105701|ENST00000608443|FKBP8	nc|ENSG00000105701|Q14318-3|FKBP8	nc|ENSG00000105701|Q14318-3|FKBP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2875366210938	2	523.287474	1044.5604	0.21736	0.00011374	0.43304	0.0002266	0.6504	0.00034034	523.2875971921949	56.437	0.75722	56.437	56.19	56.948	0					72	27	4	0	0	0	0.074645	2	12258	12258;12305		37.974	16.227	1	981610			16555	1486	10956	11069	22264;22265	22264					0.03989742960266085
QPDNIKALF	9	Unmodified	_QPDNIKALF_					0	0	0		nc|ENSG00000105701|Q14318-3|FKBP8;ENST00000544835.7_1_19:18642981-18654375:-|nuORF;nc|ENSG00000105701|Q14318|FKBP8;ENSG00000105701|ENST00000608443|FKBP8	nc|ENSG00000105701|Q14318-3|FKBP8	nc|ENSG00000105701|Q14318-3|FKBP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.28759765625	2	523.287474	1044.5604	0.11195	5.8584E-05	0.59827	0.00031306	0.71022	0.00037165	523.287727842717	56.402	0.70139	56.468	56.183	56.884	0.066452					59	25	4	0	0	0	0.074645	2	12101	12101;12149		37.974	16.227	1	865040			16556	1486	10956	11069	22266;22267	22266					0.03989742960266085
QPDNIVYVM	9	Oxidation (M)	_QPDNIVYVM(Oxidation (M))_		QPDNIVYVM(1)		QPDNIVYVM(71)	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.76318359375	2	547.762975	1093.5114	0.24333	0.00013329	-0.21808	-0.00011946	0.02525	1.3831E-05	547.762781001673	56.53	0.84786	56.53	56.217	57.065	0					51	31	2	0	0	0	0.015182	1	12349	12349		71.134	42.647	1	278770			16557	1221	10957	11070	22268	22268		70			-0.031619133909771335
QPDNIVYVM	9	Oxidation (M)	_QPDNIVYVM(Oxidation (M))_		QPDNIVYVM(1)		QPDNIVYVM(61)	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7627563476562	2	547.762975	1093.5114	0.30317	0.00016607	-0.24132	-0.00013218	0.061853	3.3881E-05	547.7628005927688	56.449	0.80715	56.515	56.234	57.042	0.066452					50	29	2	0	0	0	0.045703	1	12175	12175		61.357	45.51	1	190070			16558	1221	10957	11070	22269	22269		70			-0.031619133909771335
QPDPAIGVHL	10	Unmodified	_QPDPAIGVHL_					0	0	0		nc|ENSG00000142892|Q92643-2|PIGK;ENSG00000142892|ENST00000370812|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7849731445312	2	523.785099	1045.55564	0.26361	0.00013807	0.066634	3.4902E-05	0.33024	0.00017298	523.7850672354405	53.331	0.98045	53.331	53.006	53.987	0					93	38	4	0	0	0	0.25965	1	11287	11287		26.884	8.7487	1	791240			16559	3124	10958	11071	22270	22270					0.03468858817518594
QPDPAIGVHL	10	Unmodified	_QPDPAIGVHL_					0	0	0		nc|ENSG00000142892|Q92643-2|PIGK;ENSG00000142892|ENST00000370812|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.78515625	2	523.785099	1045.55564	0.30745	0.00016104	0.12069	6.3214E-05	0.42814	0.00022425	523.7850286104543	53.335	0.75648	53.4	53.033	53.789	0.06543					99	36	4	0	0	0	0.12723	2	11186	11132;11186		42.095	21.641	1	690460			16560	3124	10958	11071	22271;22272	22272					0.03468858817518594
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8223876953125	2	570.822212	1139.62987	0.26712	0.00015248	0.15372	8.7745E-05	0.42084	0.00024022	570.8222034926316	48.031	0.87038	48.031	47.735	48.605	0					83	29	4	0	0	0	0.0062146	3	9701	9701;9741;9788		79.596	27.966	1	1273100			16561	1453	10959	11072	22273;22274;22275	22273					0.06564201909031908
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.822265625	2	570.822212	1139.62987	0.47609	0.00027176	-0.046705	-2.666E-05	0.42938	0.0002451	570.8220738394782	47.924	0.77711	48.004	47.726	48.503	0.080029					88	27	4	0	0	0	0.00079876	4	9562	9514;9562;9607;9651		92.653	44.905	1	956320			16562	1453	10959	11072	22276;22277;22278;22279	22277					0.06564201909031908
QPDSYFSVL	9	Unmodified	_QPDSYFSVL_					0	0	0		nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000494465.5_1_2:242592964-242606150:+|nuORF;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF;nc|ENSG00000168397|Q9Y4P1-3|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2557373046875	2	528.25584	1054.49713	0.34222	0.00018078	-0.14169	-7.4849E-05	0.20053	0.00010593	528.2557296375136	75.908	0.31714	75.952	75.837	76.154	0.044037					28	24	2	0	0	0	0.11198	1	18047	18047		29.841	10.584	1	901590			16563	4286	10960	11073	22280	22280					-0.027942425476112476
QPDVVVVEL	9	Unmodified	_QPDVVVVEL_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2819519042969	2	499.281857	996.549162	0.070564	3.5231E-05	0.11397	5.6904E-05	0.18454	9.2135E-05	499.2819950813416	72.997	0.56593	72.997	72.718	73.284	0					46	19	3	0	0	0	0.10543	2	17313	17313;17367		31.268	5.869	1	218900			16564	4404	10961	11074	22281;22282	22281					0.050749208661500234
QPDVVVVEL	9	Unmodified	_QPDVVVVEL_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2815856933594	2	499.281857	996.549162	0.1821	9.0919E-05	-0.095662	-4.7762E-05	0.086439	4.3157E-05	499.2817093708909	72.9	0.67097	72.953	72.623	73.294	0.052567					36	22	2	0	0	0	0.10543	2	17172	17123;17172		31.268	5.552	1	177090			16565	4404	10961	11074	22283;22284	22284					0.050749208661500234
QPEANPSHL	9	Unmodified	_QPEANPSHL_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7434997558594	2	496.743431	991.472308	-0.032774	-1.628E-05	-0.72975	-0.0003625	-0.76253	-0.00037878	496.74344880347064	28.599	1.1138	28.599	28.342	29.456	0					135	62	5	0	0	0	0.28472	2	3850	3840;3850		8.7454	5.4641	1	331350			16566	7497	10962	11075	22285;22286	22286					-0.023768776303313643
QPEANPSHL	9	Unmodified	_QPEANPSHL_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7434997558594	2	496.743431	991.472308	-0.031098	-1.5448E-05	-0.92687	-0.00046042	-0.95797	-0.00047587	496.743471800464	28.515	0.84829	28.597	28.368	29.216	0.082132					146	55	6	0	0	0	0.17428	1	3710	3710		21.537	6.9553	1	281930			16567	7497	10962	11075	22287	22287					-0.023768776303313643
QPEAPWTL	8	Unmodified	_QPEAPWTL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.2392578125	2	471.239993	940.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.223	1	67.223	66.723	67.723	0								0	0	0	0.38822	1	15564	15564		7.9102	0	1				16568	4822	10963	11076	22288	22288					-0.007181905109064246
QPEGEEPEM	9	Oxidation (M)	_QPEGEEPEM(Oxidation (M))_		QPEGEEPEM(1)		QPEGEEPEM(44)	0	0	1		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000493339.1_1_6:43111066-43112355:+|nuORF;nc|ENSG00000112655|Q13308-5|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2080078125	2	531.208229	1060.40191	-0.17862	-9.4887E-05	-0.057353	-3.0466E-05	-0.23598	-0.00012535	531.2081482640165	25.21	0.62925	25.21	24.957	25.587	0					91	49	2	0	0	0	0.047633	1	2917	2917		43.858	13.222	1	57881			16569	1768	10964	11077	22289	22289		105			-0.12587963800979196
QPEHGPNTDLL	11	Unmodified	_QPEHGPNTDLL_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.7989501953125	2	610.798934	1219.58332	-0.41274	-0.0002521	0.20373	0.00012444	-0.20901	-0.00012766	610.7989763012908	42.608	1.2177	42.608	42.279	43.497	0					103	41	4	0	0	0	0.11131	2	8092	8045;8092		43.982	17.098	1	727330			16570	6982;3389	10965	11078	22290;22291	22291					-0.017692827128939825
QPEHGPNTDLL	11	Unmodified	_QPEHGPNTDLL_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.7990112304688	2	610.798934	1219.58332	-0.17866	-0.00010912	0.12381	7.5622E-05	-0.05485	-3.3502E-05	610.7989363155035	42.493	0.89449	42.583	42.342	43.236	0.089764					93	33	4	0	0	0	0.13541	2	7944	7897;7944		40.239	13.356	1	601800			16571	6982;3389	10965	11078	22292;22293	22293					-0.017692827128939825
QPELPEVIAM	10	Oxidation (M)	_QPELPEVIAM(Oxidation (M))_		QPELPEVIAM(1)		QPELPEVIAM(86)	0	0	1		nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;TMX2-CTNND1|14|fusion;nc|ENSG00000198561|O60716-9|CTNND1;TMX2-CTNND1|15|fusion;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;TMX2-CTNND1|11|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;TMX2-CTNND1|12|fusion;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;nc|ENSG00000198561|O60716-8|CTNND1;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;TMX2-CTNND1|2|fusion	nc|ENSG00000198561|O60716-32|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7913818359375	2	571.791732	1141.56891	0.72279	0.00041329	-0.64539	-0.00036903	0.077404	4.4259E-05	571.7907281061197	66.188	0.64629	66.188	65.909	66.555	0					48	22	3	0	0	0	0.0013369	2	15240	15240;15291		85.642	35.709	1	295900			16572	255	10966	11079	22294;22295	22294		10			0.003789288145981118
QPELPEVIAM	10	Oxidation (M)	_QPELPEVIAM(Oxidation (M))_		QPELPEVIAM(1)		QPELPEVIAM(46)	0	0	1		nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;TMX2-CTNND1|14|fusion;nc|ENSG00000198561|O60716-9|CTNND1;TMX2-CTNND1|15|fusion;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;TMX2-CTNND1|11|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;TMX2-CTNND1|12|fusion;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;nc|ENSG00000198561|O60716-8|CTNND1;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;TMX2-CTNND1|2|fusion	nc|ENSG00000198561|O60716-32|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.79150390625	2	571.791732	1141.56891	0.56795	0.00032475	-0.94164	-0.00053842	-0.3737	-0.00021368	571.7908891678309	66.214	0.69352	66.281	65.939	66.632	0.066872					56	25	3	0	0	0	0.095946	1	15083	15083		45.7	9.5726	1	291550			16573	255	10966	11079	22296	22296		10			0.003789288145981118
QPERDWVL	8	Unmodified	_QPERDWVL_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.76953125	2	521.769448	1041.52434	0.16901	8.8185E-05	0.013891	7.2479E-06	0.1829	9.5433E-05	521.769425196517	51.582	0.776	51.582	51.239	52.015	0					82	26	4	0	0	0	0.11372	2	10838	10794;10838		52.268	16.141	1	2294600			16574	1168	10967	11080	22297;22298	22298					0.005242857834218739
QPERDWVL	8	Unmodified	_QPERDWVL_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7694091796875	2	521.769448	1041.52434	0.20913	0.00010912	-0.090459	-4.7199E-05	0.11867	6.1919E-05	521.7693960058995	51.542	1.0628	51.612	50.909	51.972	0.069874					113	40	4	0	0	0	0.089527	3	10636	10590;10636;10681		56.177	10.372	1	2100500			16575	1168	10967	11080	22299;22300;22301	22300					0.005242857834218739
QPFREAIAL	9	Unmodified	_QPFREAIAL_					0	0	0		nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.795654296875	2	522.795466	1043.57638	0.5371	0.00028079	-0.27437	-0.00014344	0.26273	0.00013735	522.7953144178474	55.053	1.4213	55.053	54.614	56.035	0					141	51	4	0	0	0	0.0093779	3	11859	11820;11859;11901		69.105	49.933	1	5065600			16576	4895	10968	11081	22302;22303;22304	22303					0.05633449197171103
QPFREAIAL	9	Unmodified	_QPFREAIAL_					0	0	0		nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7955322265625	2	522.795466	1043.57638	0.47252	0.00024703	-0.24561	-0.0001284	0.22691	0.00011863	522.7953392026134	54.996	1.0693	55.061	54.826	55.896	0.065128					123	41	4	0	0	0	0.0093779	3	11726	11674;11726;11822		69.105	20.759	1	4141200			16577	4895	10968	11081	22305;22306;22307	22306					0.05633449197171103
QPGEVRLH	8	Unmodified	_QPGEVRLH_					0	0	0		nc|ENSG00000095539|Q9NTN9-3|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.2560729980469	2	468.256508	934.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.423	1	76.423	75.923	76.923	0								0	0	0	0.38822	1	18372	18372		5.2307	0.47466	1				16578	7466	10969	11082	22308	22308					0.0285943633180068
QPGHPRLT	8	Unmodified	_QPGHPRLT_					0	0	0		ENST00000598732.1_1_19:12779175-12779292:-|nuORF	ENST00000598732.1_1_19:12779175-12779292:-|nuORF	ENST00000598732.1_1_19:12779175-12779292:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.86944580078125	2	453.251226	904.487899	-0.021287	-9.6483E-06	-0.46811	-0.00021217	-0.4894	-0.00022182	453.2509538359225	28.642	0.58927	28.642	28.443	29.033	0					40	28	2	0	0	0	0.3576	1	3994	3994		0.69038	0	1	55825			16579	7290	10970	11083	22309	22309					0.03183453677365833
QPGWLAKH	8	Unmodified	_QPGWLAKH_					0	0	0		ITIH2|p.R204W|1|0.15|ENSG00000151655|chr10:7717768-7717768|C/T|missense_variant	ITIH2|p.R204W|1|0.15|ENSG00000151655|chr10:7717768-7717768|C/T|missense_variant	ITIH2|p.R204W|1|0.15|ENSG00000151655|chr10:7717768-7717768|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.7340087890625	2	468.756144	935.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.497	1	76.536	76.036	77.036	0.03923								0	0	0	0.38822	1	18236	18236		5.2307	2.6532	1				16580	7362	10971	11084	22310	22310					0.02740641682748901
QPHFLEFLL	9	Unmodified	_QPHFLEFLL_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3136596679688	2	572.313492	1142.61243	0.4743	0.00027145	0.022686	1.2984E-05	0.49698	0.00028443	572.3134419931441	83.366	0.87831	83.366	83.141	84.02	0					69	29	4	0	0	0	0.045703	1	20496	20496		61.357	6.5839	1	909430			16581	4396	10972	11085	22311	22311					0.0468290637404607
QPHPFDPIL	9	Unmodified	_QPHPFDPIL_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2821044921875	2	532.282192	1062.54983	0.38459	0.00020471	0.47271	0.00025162	0.8573	0.00045633	532.282178664072	59.789	0.72464	59.789	59.535	60.26	0					59	27	4	0	0	0	0.045703	1	13283	13283		61.357	0	1	313800			16582	3134	10973	11086	22312	22312					0.021057603058579843
QPHPFDPIL	9	Unmodified	_QPHPFDPIL_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2823486328125	2	532.282192	1062.54983	0.32109	0.00017091	0.01286	6.8453E-06	0.33395	0.00017775	532.2819605784285	59.669	0.66328	59.741	59.546	60.21	0.072342					49	25	3	0	0	0	0.10264	1	13125	13125		36.127	0	1	251840			16583	3134	10973	11086	22313	22313					0.021057603058579843
QPIKESNSL	9	Unmodified	_QPIKESNSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2743225097656	2	508.274564	1014.53457	-0.18658	-9.4836E-05	-0.16071	-8.1684E-05	-0.34729	-0.00017652	508.27446100951556	29.145	0.64567	29.145	28.971	29.616	0					65	36	2	0	0	0	0.032194	2	4036	4036;4072		49.554	25.534	1	420020			16584	3823	10974	11087	22314;22315	22314					0.027888487179893673
QPIKESNSL	9	Unmodified	_QPIKESNSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2744140625	2	508.274564	1014.53457	-0.14103	-7.1683E-05	-0.15119	-7.6846E-05	-0.29222	-0.00014853	508.2744533735838	29.072	0.5083	29.15	28.96	29.468	0.078289					63	33	2	0	0	0	0.056368	1	3899	3899		41.956	23.809	1	363540			16585	3823	10974	11087	22316	22316					0.027888487179893673
QPINFSVSL	9	Unmodified	_QPINFSVSL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.7743835449219	2	502.7742	1003.53385	0.34404	0.00017297	0.17826	8.9622E-05	0.52229	0.00026259	502.77420553660255	75.613	0.5573	75.613	75.38	75.937	0					62	29	3	0	0	0	0.0028323	3	18143	18095;18143;18182		110.67	45.44	1	2920800			16586	7526	10975	11088	22317;22318;22319	22318					0.032220540689422705
QPINFSVSL	9	Unmodified	_QPINFSVSL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.7744140625	2	502.7742	1003.53385	0.34216	0.00017203	0.2982	0.00014992	0.64035	0.00032195	502.7742336615042	75.593	0.50089	75.637	75.412	75.913	0.044037					59	26	3	0	0	0	0.0034419	3	17976	17927;17976;18026		106.94	41.705	1	5772100			16587	7526	10975	11088	22320;22321;22322	22321					0.032220540689422705
QPISVDWCF	9	Unmodified	_QPISVDWCF_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7527465820312	2	547.75241	1093.49027	0.16859	9.2348E-05	-0.16172	-8.8583E-05	0.0068745	3.7655E-06	547.75238893922	86.486	1.424	86.486	86.179	87.603	0					105	57	4	0	0	0	0.006264	2	21439	21387;21439		78.728	46.423	1	939460			16588	5727	10976	11089	22323;22324	22324					-0.052738786998588694
QPISVDWCF	9	Unmodified	_QPISVDWCF_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7527465820312	2	547.75241	1093.49027	0.34021	0.00018635	0.0076979	4.2166E-06	0.34791	0.00019057	547.7524276679893	86.44	0.71474	86.465	86.164	86.879	0.025169					79	29	4	0	0	0	0.0052407	2	21291	21239;21291		81.89	41.933	1	1142400			16589	5727	10976	11089	22325;22326	22326					-0.052738786998588694
QPIVSRARPEL	11	Unmodified	_QPIVSRARPEL_					0	0	0		RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant	RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.369140625	2	633.369861	1264.72517	0.45363	0.00028731	-0.66011	-0.0004181	-0.20649	-0.00013078	633.369147260821	93.422	0.51374	93.459	93.22	93.734	0.037369					32	21	2	0	0	0	0.4167	1	23419	23419		0	0	1	84810			16590	5212	10977	11090	22327	22327					0.10339555100085818
QPKCWHYYL	9	Unmodified	_QPKCWHYYL_					0	0	0			REV__nc|ENSG00000100298|Q6NTF7-4|APOBEC3H	REV__nc|ENSG00000100298|Q6NTF7-4|APOBEC3H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3077392578125	2	619.294776	1236.575	-0.15303	-9.4769E-05	-1.2979	-0.00080376	-1.4509	-0.00089853	619.2938457596703	58.596	0.64738	58.666	58.322	58.969	0.070477					38	22	2	0	0	0	0.21398	1	12804	12804		16.942	3.0362	1	92631	+		16591	8380	10978	11091	22328	22328					-0.033825081632130605
QPKKIKEDYF	10	Unmodified	_QPKKIKEDYF_					0	0	0		ENSG00000123594|ENST00000380622|ATXN3L	ENSG00000123594|ENST00000380622|ATXN3L	ENSG00000123594|ENST00000380622|ATXN3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.5711364746094	3	432.571322	1294.69214	-0.34637	-0.00014983	-0.70311	-0.00030414	-1.0495	-0.00045397	432.57121314904504	41.422	2.8094	41.422	40.881	43.691	0					274	100	6	0	0	0	0.32754	2	7687	7687;7729		19.626	7.3984	1	508220			16592	2225	10979	11092	22329;22330	22329					0.05657928257369349
QPLHEEIAL	9	Unmodified	_QPLHEEIAL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15;nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF;nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000197442|ENST00000359015|MAP3K5;nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2849731445312	2	525.284931	1048.55531	0.1564	8.2155E-05	-0.1098	-5.7679E-05	0.046596	2.4476E-05	525.2848279106461	50.149	0.57033	50.222	49.956	50.526	0.07312					49	19	3	0	0	0	0.024893	1	10211	10211		54.774	0	1	547390			16593	3120;5297	10980	11093	22331	22331					0.032974390976505674
QPLHQHSCSPE	11	Unmodified	_QPLHQHSCSPE_					0	0	0			REV__nc|ENSG00000215568|Q2WGN9|GAB4	REV__nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7831420898438	2	631.782761	1261.55097	0.13251	8.3718E-05	0.19534	0.00012341	0.32785	0.00020713	631.7829401906346	90.482	1.0646	90.482	90.118	91.183	0					131	40	4	0	0	0	0.38555	1	22635	22635		7.609	1.4032	1	1761300	+		16594	12890	10981	11094	22332	22332					-0.06934393387564342
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.3233337402344	2	483.323328	964.632104	0.32194	0.0001556	-0.097735	-4.7238E-05	0.2242	0.00010836	483.323208311389	92.732	1.1969	92.732	92.431	93.628	0					134	46	4	0	0	0	0.026569	6	23287	23287;23334;23376;23425;23473;23576		53.576	0	1	2220500			16595	4851	10982	11095	22333;22334;22335;22336;22337;22338	22333					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.3238525390625	2	483.323328	964.632104	0.20914	0.00010108	-0.032712	-1.5811E-05	0.17643	8.5274E-05	483.3236946304048	93.912	0.22694	93.912	93.77	93.997	0					13	11	2	0	0	0	0.16036	1	23677	23677		23.148	0	1	150340			16596	4851	10982	11095	22339	22339					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.3234558105469	2	483.323328	964.632104	0.30237	0.00014614	-0.023596	-1.1405E-05	0.27877	0.00013474	483.3232725417727	92.724	1.2035	92.761	92.402	93.605	0.03653					124	48	4	0	0	0	0.026569	4	23191	23104;23150;23191;23234		53.576	0	1	4957400			16597	4851	10982	11095	22340;22341;22342;22343	22342					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.3232727050781	2	483.323328	964.632104	0.2037	9.8452E-05	-0.04489	-2.1697E-05	0.15881	7.6755E-05	483.32327571846673	93.455	0.57937	93.493	93.271	93.85	0.037369					41	22	2	0	0	0	0.21398	2	23380	23380;23429		16.942	0	1	217090			16598	4851	10982	11095	22344;22345	22344					0.1483728238479216
QPLLRQQG	8	Unmodified	_QPLLRQQG_					0	0	0			REV__ENST00000602438.1_1_19:19260237-19296893:-|nuORF	REV__ENST00000602438.1_1_19:19260237-19296893:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2720642089844	2	470.272158	938.529764	-0.10101	-4.7502E-05	0.23864	0.00011222	0.13763	6.4722E-05	470.27209426349515	86.934	0.71979	86.962	86.706	87.426	0.027573					72	31	3	0	0	0	0.54097	1	21544	21544		0.69038	0	1	1434000	+		16599	12628	10983	11096	22346	22346					0.05804009365908769
QPLNKSESI	9	Unmodified	_QPLNKSESI_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2742614746094	2	508.274564	1014.53457	-0.14103	-7.1683E-05	-0.15119	-7.6846E-05	-0.29222	-0.00014853	508.2744533735838	29.072	0.5083	29.15	28.96	29.468	0.078289					63	33	2	0	0	0	0.27332	1	3939	3939		10.074	0	1	363540	+		16600	8298	10984	11097	22347	22347					0.027888487179893673
QPLQKEPSL	9	Unmodified	_QPLQKEPSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2927856445312	2	520.292756	1038.57096	0.29189	0.00015187	-0.10969	-5.7072E-05	0.18219	9.4794E-05	520.2925310294754	37.88	0.7429	37.964	37.716	38.459	0.084476					83	26	5	0	0	0	0.048027	1	6540	6540		43.772	12.504	1	372770			16601	3944	10985	11098	22348	22348					0.053217256147036096
QPLQKEPSL	9	Unmodified	_QPLQKEPSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	520.292756	1038.57096	0.33777	0.00017574	-0.2421	-0.00012596	0.095675	4.9779E-05	520.2924922892086	37.997	0.92736	37.997	37.729	38.657	0	0.016339	-5.1207E-05	NaN	43.772	86	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442190			16602	3944	10985	11098							0.053217256147036096
QPLSKTWEL	9	Unmodified	_QPLSKTWEL_					0	0	0		ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000121481|Q99496-2|RNF2	ENSG00000121481|ENST00000367510|RNF2	ENSG00000121481|ENST00000367510|RNF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.302001953125	2	551.300581	1100.58661	0.72283	0.0003985	0.40994	0.000226	1.1328	0.0006245	551.3004486055775	54.438	0.44975	54.438	54.164	54.614	0					41	21	3	0	0	0	0.13341	1	11677	11677		26.268	10.421	1	272470			16603	2154	10986	11099	22349	22349					0.04034012131751297
QPLSKTWEL	9	Unmodified	_QPLSKTWEL_					0	0	0		ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000121481|Q99496-2|RNF2	ENSG00000121481|ENST00000367510|RNF2	ENSG00000121481|ENST00000367510|RNF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3015747070312	2	551.300581	1100.58661	0.71298	0.00039307	0.11	6.0642E-05	0.82298	0.00045371	551.300629802926	54.386	0.41331	54.451	54.219	54.633	0.065128					34	20	2	0	0	0	0.13341	1	11505	11505		26.268	12.362	1	192400			16604	2154	10986	11099	22350	22350					0.04034012131751297
QPLSPLSVL	9	Unmodified	_QPLSPLSVL_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2870788574219	2	477.286943	952.559333	0.26945	0.0001286	-0.079774	-3.8075E-05	0.18968	9.053E-05	477.2867878250221	70.49	0.61613	70.49	70.17	70.786	0					55	22	3	0	0	0	0.28472	1	16610	16610		8.7454	0	1	1050700	+		16605	9384	10987	11100	22351	22351					0.08115528591372367
QPMQPTPSM	9	2 Oxidation (M)	_QPM(Oxidation (M))QPTPSM(Oxidation (M))_		QPM(1)QPTPSM(1)		QPM(59)QPTPSM(59)	0	0	2		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.725341796875	2	524.725535	1047.43652	-0.19867	-0.00010425	-0.29478	-0.00015468	-0.49346	-0.00025893	524.7254494582396	26.559	0.81535	26.559	26.304	27.12	0					152	58	4	0	0	0	0.01943	1	3292	3292		58.679	24.277	1	201360			16606	2009	10988	11101	22352	22352		123;124			-0.08530419193857597
QPMQPTPSM	9	2 Oxidation (M)	_QPM(Oxidation (M))QPTPSM(Oxidation (M))_		QPM(1)QPTPSM(1)		QPM(52)QPTPSM(52)	0	0	2		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7254638671875	2	524.725535	1047.43652	-0.19706	-0.0001034	-0.30058	-0.00015772	-0.49764	-0.00026113	524.7255198077415	26.428	0.81833	26.519	26.247	27.065	0.091507					157	62	4	0	0	0	0.028398	1	3123	3123		52.268	16.141	1	169390			16607	2009	10988	11101	22353	22353		123;124			-0.08530419193857597
QPMQPTPSM	9	2 Oxidation (M)	_QPM(Oxidation (M))QPTPSM(Oxidation (M))_		QPM(1)QPTPSM(1)		QPM(59)QPTPSM(59)	0	0	2		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2281494140625	2	524.725535	1047.43652	-0.22776	-0.00011951	0.42973	0.00022549	0.20198	0.00010598	524.7255767801043	27.398	1.0679	27.485	27.061	28.128	0.086699					114	76	2	0	0	0	0.01943	1	3407	3407		58.679	31.05	1	140400			16608	2009	10988	11101	22354	22354		123;124			-0.08530419193857597
QPNGGEPFL	9	Unmodified	_QPNGGEPFL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7350769042969	2	479.735074	957.455596	0.13117	6.2929E-05	0.035283	1.6927E-05	0.16646	7.9855E-05	479.73501258864417	57.28	0.93523	57.28	57	57.935	0					85	33	4	0	0	0	0.0074933	3	12544	12501;12544;12586		74.929	42.812	1	1609900			16609	3136	10989	11102	22355;22356;22357	22356					-0.024833785162968525
QPNGGEPFL	9	Unmodified	_QPNGGEPFL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7349548339844	2	479.735074	957.455596	0.13863	6.6505E-05	0.04763	2.285E-05	0.18626	8.9355E-05	479.73500900785695	57.23	0.85344	57.298	56.972	57.825	0.068371					88	32	4	0	0	0	0.0074933	4	12384	12336;12384;12428;12474		74.929	42.812	1	1248500			16610	3136	10989	11102	22358;22359;22360;22361	22359					-0.024833785162968525
QPNGLNGLEL	10	Unmodified	_QPNGLNGLEL_					0	0	0			REV__ENSG00000085840|ENST00000371568|ORC1	REV__ENSG00000085840|ENST00000371568|ORC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7799072265625	2	527.780013	1053.54547	-0.12168	-6.4222E-05	-0.30969	-0.00016345	-0.43137	-0.00022767	527.7798077839753	32.084	0.5765	32.084	31.848	32.425	0					43	22	2	0	0	0	0.42901	1	4951	4951		8.7454	1.4562	1	109900	+		16611	8269	10990	11103	22362	22362					0.02084251092287559
QPNGTVRC	8	Unmodified	_QPNGTVRC_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.7137756347656	2	437.713619	873.412685	0.60781	0.00026604	3.3895	0.0014836	3.9973	0.0017497	437.71490364431907	99.776	0.6219	99.776	99.433	100.05	0					59	33	2	0	0	0	0.53494	1	25474	25474		4.756	0.81161	1	675940	+		16612	9703	10991	11104	22363	22363					-0.02908471845364602
QPQDVDLAL	9	Unmodified	_QPQDVDLAL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.76171875	2	499.761289	997.508025	0.44316	0.00022147	0.22962	0.00011475	0.67278	0.00033623	499.76138603269555	62.639	0.60342	62.639	62.421	63.025	0					43	21	3	0	0	0	0.12214	2	14156	14156;14210		27.629	2.6378	1	185570			16613	4920	10992	11105	22364;22365	22364					0.009171598266561887
QPQDVDLAL	9	Unmodified	_QPQDVDLAL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7613220214844	2	499.761289	997.508025	0.39186	0.00019584	-0.11409	-5.7018E-05	0.27777	0.00013882	499.7611559759907	62.537	0.51011	62.61	62.424	62.934	0.072701					28	17	2	0	0	0	0.17428	1	13980	13980		21.537	2.175	1	262930			16614	4920	10992	11105	22366	22366					0.009171598266561887
QPQETSPEL	9	Unmodified	_QPQETSPEL_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2675170898438	2	514.748379	1027.4822	-0.40218	-0.00020702	0.70702	0.00036394	0.30484	0.00015692	514.748682251822	41.185	0.46307	41.185	40.996	41.459	0					24	16	2	0	0	0	0.2125	1	7679	7679		17.113	1.8644	1	91054			16615	2717	10993	11106	22367	22367					-0.030437344156325707
QPQETSPEL	9	Unmodified	_QPQETSPEL_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7486572265625	2	514.748379	1027.4822	-0.25214	-0.00012979	0.78174	0.0004024	0.5296	0.00027261	514.7487013488462	41.078	0.35925	41.168	41.039	41.398	0.089645					20	12	2	0	0	0	0.2125	2	7502	7502;7526		17.113	1.8644	1	69441			16616	2717	10993	11106	22368;22369	22368					-0.030437344156325707
QPQPCIHN	8	Unmodified	_QPQPCIHN_					0	0	0			REV__ENST00000377680.3_1_9:38621281-38621927:+|nuORF	REV__ENST00000377680.3_1_9:38621281-38621927:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.72332763671875	2	468.721444	935.428335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.351	1	84.374	83.874	84.874	0.022636								0	0	0	0.38822	1	20627	20627		7.9102	1.187	1		+		16617	11652	10994	11107	22370	22370					-0.04196185328316915
QPQPPEQL	8	Unmodified	_QPQPPEQL_					0	0	0		nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7425842285156	2	468.742899	935.471246	0.0707	3.314E-05	-0.63065	-0.00029561	-0.55995	-0.00026247	468.74260070966267	51.106	0.65297	51.106	50.795	51.448	0					35	21	2	0	0	0	0.53557	1	10709	10709		4.3292	0	1	149700			16618	7532	10995	11108	22371	22371					0.0009290800077224048
QPQQVIHGEKL	11	Unmodified	_QPQQVIHGEKL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.2386779785156	3	426.238455	1275.69353	0.054648	2.3293E-05	-0.2125	-9.0576E-05	-0.15785	-6.7283E-05	426.2384930335248	31.687	1.4608	31.687	31.469	32.93	0					191	63	5	0	0	0	0.19204	3	4815	4769;4815;4859		31.446	15.908	1	1334300			16619	360	10996	11109	22372;22373;22374	22373					0.06671562346150495
QPQQVIHGEKL	11	Unmodified	_QPQQVIHGEKL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.8544311523438	2	638.854044	1275.69353	-0.20179	-0.00012892	0.47106	0.00030094	0.26926	0.00017202	638.8543232814342	31.68	0.56442	31.68	31.517	32.082	0					46	23	3	0	0	0	0.4111	1	4795	4795		3.8763	2.8049	1	87243			16620	360	10996	11109	22375	22375					0.06671562346150495
QPQQVIHGEKL	11	Unmodified	_QPQQVIHGEKL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.5161437988281	3	426.238455	1275.69353	0.08793	3.7479E-05	-0.85762	-0.00036555	-0.76969	-0.00032807	426.23801175623964	33.207	0.47351	33.207	32.905	33.378	0					28	18	2	0	0	0	0.31096	1	5200	5200		1.4551	0.94916	1	26336			16621	360	10996	11109	22376	22376					0.06671562346150495
QPQQVIHGEKL	11	Unmodified	_QPQQVIHGEKL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.2386779785156	3	426.238455	1275.69353	-0.22207	-9.4656E-05	0.10323	4.4002E-05	-0.11884	-5.0654E-05	426.23863133360186	31.649	1.4986	31.723	31.493	32.992	0.07378					182	73	5	0	0	0	0.19204	4	4679	4636;4679;4722;4768		31.446	12.985	1	1287400			16622	360	10996	11109	22377;22378;22379;22380	22378					0.06671562346150495
QPQQVIHGEKL	11	Unmodified	_QPQQVIHGEKL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.8541870117188	2	638.854044	1275.69353	-0.12797	-8.1754E-05	0.40677	0.00025987	0.2788	0.00017811	638.8542645673349	31.655	0.4938	31.729	31.558	32.052	0.073782					53	22	3	0	0	0	0.41047	2	4651	4651;4696		2.086	2.086	1	96860			16623	360	10996	11109	22381;22382	22381					0.06671562346150495
QPQSHETAL	9	Unmodified	_QPQSHETAL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7485656738281	2	505.748713	1009.48287	-0.3186	-0.00016113	-0.071931	-3.6379E-05	-0.39053	-0.00019751	505.7487308697265	23.878	1.2008	23.878	23.624	24.825	0					285	102	5	0	0	0	0.031665	4	2560	2525;2560;2593;2629		49.933	23.728	1	1201300			16624	4541	10997	11110	22383;22384;22385;22386	22384					-0.021488949759145726
QPQSHETAL	9	Unmodified	_QPQSHETAL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.74859619140625	2	505.748713	1009.48287	-0.062298	-3.1507E-05	-0.22655	-0.00011458	-0.28885	-0.00014609	505.74862961581636	23.7	1.225	23.799	23.543	24.768	0.099739					290	111	4	0	0	0	0.03472	3	2353	2317;2353;2389		47.749	27.295	1	1102500			16625	4541	10997	11110	22387;22388;22389	22388					-0.021488949759145726
QPRGQGTM	8	Unmodified	_QPRGQGTM_					0	0	0		ENST00000392973.7_1_16:90075326-90076003:-|nuORF	ENST00000392973.7_1_16:90075326-90076003:-|nuORF	ENST00000392973.7_1_16:90075326-90076003:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.71539306640625	2	437.713619	873.412685	0.60781	0.00026604	3.3895	0.0014836	3.9973	0.0017497	437.71490364431907	99.776	0.6219	99.776	99.433	100.05	0					59	33	2	0	0	0	0.53494	2	25431	25431;25487		4.756	2.1785	1	675940			16626	6318	10998	11111	22390;22391	22390					-0.029084718453532332
QPRPQRRQR	9	Unmodified	_QPRPQRRQR_					0	0	0			REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.906494140625	3	407.906033	1220.69627	0.41999	0.00017132	0.6611	0.00026966	1.0811	0.00044098	407.9062173976875	90.136	2.4332	90.136	89.098	91.531	0					165	93	2	0	0	0	0.33208	6	22428	22428;22472;22545;22612;22664;22737		2.4985	2.4985	1	522320	+		16627	9456	10999	11112	22392;22393;22394;22395;22396;22397	22392					0.09474875314299425
QPRPQRRQR	9	Unmodified	_QPRPQRRQR_					0	0	0			REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	407.906033	1220.69627	-0.080927	-3.3011E-05	1.1493	0.00046879	1.0683	0.00043578	407.90641485880997	89.94	2.706	89.974	88.905	91.611	0.034058	-0.08093	0.00018082	NaN	2.4985	226	105	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570510	+		16628	9456	10999	11112							0.09474875314299425
QPRQQYEV	8	Unmodified	_QPRQQYEV_					0	0	0			REV__ENSG00000007001|ENST00000005756|UPP2	REV__ENSG00000007001|ENST00000005756|UPP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2647705078125	2	524.26453	1046.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.994	1	27.081	26.581	27.581	0.0867								0	0	0	0.38822	1	3291	3291		2.5775	0	1		+		16629	7949	11000	11113	22398	22398					-0.0068890222196387185
QPRRQRGLL	9	Unmodified	_QPRRQRGLL_					0	0	0			REV__ENST00000331434.6_1_8:146277984-146278266:+|nuORF	REV__ENST00000331434.6_1_8:146277984-146278266:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3441772460938	2	562.343981	1122.67341	0.60547	0.00034048	0.15763	8.8643E-05	0.7631	0.00042913	562.3440175133268	84.663	0.7478	84.686	84.463	85.211	0.023132					70	41	3	0	0	0	0.3354	1	20820	20820		2.0598	0.21551	1	866810	+		16630	11422	11001	11114	22399	22399					0.11697856196838075
QPRYQYMAR	9	Unmodified	_QPRYQYMAR_					0	0	0			REV__nc|ENSG00000120896|O60504-2|SORBS3	REV__nc|ENSG00000120896|O60504-2|SORBS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3697509765625	2	606.800757	1211.58696	0.75671	0.00045917	-2.2846	-0.0013863	-1.5279	-0.00092711	606.7996564590205	88.276	0.16064	88.306	88.224	88.385	0.030037					6	5	2	0	0	0	0.25644	1	21815	21815		3.9444	0.94915	1	36594	+		16631	8889	11002	11115	22400	22400					-0.010368914200398649
QPSPILEFL	9	Unmodified	_QPSPILEFL_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2923583984375	2	522.292225	1042.5699	0.25993	0.00013576	0.79893	0.00041728	1.0589	0.00055304	522.2925587660689	90.475	0.39651	90.475	90.231	90.628	0					36	14	3	0	0	0	0.028398	2	22611	22611;22661		52.268	23.405	1	419160			16632	7672	11003	11116	22401;22402	22401					0.050315112458065414
QPSPILEFL	9	Unmodified	_QPSPILEFL_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2927856445312	2	522.292225	1042.5699	-0.051722	-2.7014E-05	1.1866	0.00061976	1.1349	0.00059275	522.2926928161327	90.386	0.41086	90.42	90.216	90.627	0.034065					35	16	3	0	0	0	0.047633	2	22445	22445;22490		43.858	11.09	1	352390			16633	7672	11003	11116	22403;22404	22403					0.050315112458065414
QPTFTEHLL	9	Unmodified	_QPTFTEHLL_					0	0	0		nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT;nc|ENSG00000197568|Q9XRX5|ANKRD13C-DT;nc|ENSG00000197568|Q9XRX5-2|ANKRD13C-DT	nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT	nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.267333984375	2	543.284931	1084.55531	0.33245	0.00018061	0.021539	1.1702E-05	0.35399	0.00019231	543.2849947758478	56.179	0.64261	56.179	55.841	56.484	0					56	23	4	0	0	0	0.17491	1	12182	12182		28.487	22.281	1	496940			16634	7586	11004	11117	22405	22405					0.0164143909764789
QPTFTEHLL	9	Unmodified	_QPTFTEHLL_					0	0	0		nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT;nc|ENSG00000197568|Q9XRX5|ANKRD13C-DT;nc|ENSG00000197568|Q9XRX5-2|ANKRD13C-DT	nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT	nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2850341796875	2	543.284931	1084.55531	0.26816	0.00014569	0.10725	5.827E-05	0.37541	0.00020396	543.284967765203	56.103	0.5318	56.17	56.011	56.543	0.066448					37	20	3	0	0	0	0.15911	1	12072	12072		32.305	9.1571	1	314140			16635	7586	11004	11117	22406	22406					0.0164143909764789
QPTGEEPAL	9	Unmodified	_QPTGEEPAL_					0	0	0		ENST00000480844.2_1_2:74732736-74734502:-|nuORF;nc|ENSG00000115289|Q9BSM1-3|PCGF1;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENSG00000115289|ENST00000233630|PCGF1	ENST00000480844.2_1_2:74732736-74734502:-|nuORF	ENST00000480844.2_1_2:74732736-74734502:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2320556640625	2	471.232364	940.450176	-0.36897	-0.00017387	0.11648	5.4889E-05	-0.25249	-0.00011898	471.2323666686225	43.008	0.64545	43.098	42.781	43.426	0.089764					50	23	3	0	0	0	0.12214	1	8062	8062		27.629	3.6082	1	214650			16636	1895	11005	11118	22407	22407					-0.022431020987710326
QPTIERVAL	9	Unmodified	_QPTIERVAL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.8008422851562	2	513.800749	1025.58694	0.24709	0.00012696	-0.49623	-0.00025496	-0.24914	-0.00012801	513.8005031082498	48.468	0.55051	48.468	48.251	48.801	0					43	18	3	0	0	0	0.22083	2	9849	9849;9898		16.149	5.3252	1	314630			16637	3948	11006	11119	22408;22409	22408					0.07517431851601941
QPTIERVAL	9	Unmodified	_QPTIERVAL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.8006591796875	2	513.800749	1025.58694	0.32639	0.0001677	-0.79151	-0.00040668	-0.46512	-0.00023898	513.8004174857986	48.37	0.44809	48.45	48.274	48.722	0.080032					37	14	3	0	0	0	0.22083	1	9693	9693		16.149	5.3252	1	250000			16638	3948	11006	11119	22410	22410					0.07517431851601941
QPTKRSRA	8	Unmodified	_QPTKRSRA_					0	0	0			REV__ENSG00000041802|ENST00000265245|LSG1	REV__ENSG00000041802|ENST00000265245|LSG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2834167480469	2	472.275232	942.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.434	1	96.473	95.973	96.973	0.039772								0	0	0	0.38822	1	24305	24305		4.3292	0.38484	1		+		16639	8031	11007	11120	22411	22411					0.062345275974166725
QPVGGDPEV	9	Unmodified	_QPVGGDPEV_					0	0	0		nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-5|SHC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	449.21881103515625	2	449.219257	896.423961	0.43276	0.00019441	-0.85156	-0.00038254	-0.41879	-0.00018813	449.2187562146314	38.462	0.56981	38.462	38.274	38.844	0					51	20	4	0	0	0	0.20194	1	6817	6817		24.021	5.8856	1	171950			16640	3768	11008	11121	22412	22412					-0.02839371270238189
QPVHGDLDL	9	Unmodified	_QPVHGDLDL_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7631530761719	2	497.253631	992.49271	-0.44382	-0.00022069	-0.20496	-0.00010192	-0.64878	-0.00032261	497.25343488162065	42.051	0.68929	42.051	41.856	42.545	0					46	23	3	0	0	0	0.18364	1	7889	7889		20.454	0	1	238360			16641	2371	11009	11122	22413	22413					-0.003837069705241447
QPVHGDLDL	9	Unmodified	_QPVHGDLDL_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2535095214844	2	497.253631	992.49271	-0.10896	-5.4181E-05	0.18142	9.0213E-05	0.072461	3.6031E-05	497.2536648645627	43.078	0.86712	43.078	42.796	43.663	0					85	30	4	0	0	0	0.12809	1	8240	8240		26.884	0	1	442750			16642	2371	11009	11122	22414	22414					-0.003837069705241447
QPVHPDVTM	9	Unmodified	_QPVHPDVTM_					0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000484423.5_1_1:145576054-145578613:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2731323242188	2	512.250034	1022.48552	0.23373	0.00011973	0.15779	8.083E-05	0.39153	0.00020056	512.2501085209332	38.79	0.56711	38.79	38.567	39.134	0					37	21	2	0	0	0	0.25174	1	6943	6943		7.2892	0.56607	1	164800			16643	2548	11010	11123	22415	22415					-0.024827628425896364
QPVWLEFPC	9	Unmodified	_QPVWLEFPC_					0	0	0		nc|ENSG00000142330|Q9HC96-7|CAPN10	nc|ENSG00000142330|Q9HC96-7|CAPN10	nc|ENSG00000142330|Q9HC96-7|CAPN10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7520751953125	2	559.770603	1117.52665	0.021626	1.2105E-05	3.5655	0.0019958	3.5871	0.0020079	559.7724656455317	27.77	0.23333	27.852	27.69	27.923	0.082134					24	13	2	0	0	0	0.25051	1	3526	3526		7.9102	0	1	15784			16644	7516	11011	11124	22416	22416					-0.02741001803110521
QPYGGFLDIL	10	Unmodified	_QPYGGFLDIL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7955322265625	2	561.795132	1121.57571	0.62427	0.00035071	0.06042	3.3944E-05	0.68469	0.00038465	561.795070282187	92.726	1.0531	92.726	92.431	93.485	0					118	40	6	0	0	0	1.1116E-05	4	23326	23281;23326;23368;23417		134.3	52.405	1	3963100			16645	4759	11012	11125	22417;22418;22419;22420	22418					0.019786097574751693
QPYGGFLDIL	10	Unmodified	_QPYGGFLDIL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7954711914062	2	561.795132	1121.57571	0.65129	0.00036589	0.045601	2.5619E-05	0.6969	0.00039151	561.7950794700674	92.698	0.99436	92.734	92.452	93.447	0.036522					116	39	6	0	0	0	1.1116E-05	4	23166	23117;23166;23210;23258		134.3	41.804	1	4253600			16646	4759	11012	11125	22421;22422;22423;22424	22422					0.019786097574751693
QPYSQEWEL	9	Unmodified	_QPYSQEWEL_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2698974609375	2	590.269478	1178.5244	0.78477	0.00046322	-0.4819	-0.00028445	0.30286	0.00017877	590.2691129422128	66.849	0.85312	66.849	66.635	67.488	0					68	32	3	0	0	0	0.083124	2	15430	15430;15493		36.127	8.4982	1	597090			16647	1349	11013	11126	22425;22426	22425					-0.05771759007234323
QPYSQEWEL	9	Unmodified	_QPYSQEWEL_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2694702148438	2	590.269478	1178.5244	0.83265	0.00049149	-0.50748	-0.00029955	0.32518	0.00019194	590.2690033672751	66.79	0.73997	66.855	66.668	67.408	0.065063					53	26	3	0	0	0	0.03472	2	15266	15266;15308		47.749	20.12	1	510990			16648	1349	11013	11126	22427;22428	22427					-0.05771759007234323
QQAFYNDP	8	Unmodified	_QQAFYNDP_					0	0	0		nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7166748046875	2	491.716882	981.41921	-0.10774	-5.2979E-05	-0.1297	-6.3776E-05	-0.23744	-0.00011675	491.71670280441117	30.623	1.1676	30.623	30.265	31.432	0					112	60	2	0	0	0	0.53926	2	4512	4512;4555		1.8442	0	1	46228			16649	1610	11014	11127	22429;22430	22429					-0.07224255413007086
QQAFYNDP	8	Unmodified	_QQAFYNDP_					0	0	0		nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7164306640625	2	491.716882	981.41921	-0.088931	-4.3729E-05	-0.011125	-5.4703E-06	-0.10006	-4.9199E-05	491.7167323659092	30.702	1.1461	30.777	30.312	31.458	0.075403					108	63	2	0	0	0	0.53926	3	4341	4341;4380;4469		1.8442	0	1	42693			16650	1610	11014	11127	22431;22432;22433	22431					-0.07224255413007086
QQAKEMNY	8	Unmodified	_QQAKEMNY_					0	0	0			REV__CLPX|p.V347M|1|0.33|ENSG00000166855|chr15:65157764-65157764|C/T|missense_variant	REV__CLPX|p.V347M|1|0.33|ENSG00000166855|chr15:65157764-65157764|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2337646484375	2	506.231842	1010.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.067	1	58.137	57.637	58.637	0.069565								0	0	0	0.38822	1	12634	12634		0.69038	0	1		+		16651	7821	11015	11128	22434	22434					-0.055676397393199295
QQALSTVFEEH	11	Unmodified	_QQALSTVFEEH_					0	0	0			REV__ENSG00000085872|ENST00000546361|CHERP	REV__ENSG00000085872|ENST00000546361|CHERP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.2457275390625	2	644.812042	1287.60953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.246	1	45.246	44.746	45.746	0								0	0	0	0.33939	1	8877	8877		0.96228	0.43751	1		+		16652	8270	11016	11129	22435	22435					-0.022770135414248216
QQALYLDL	8	Unmodified	_QQALYLDL_					0	0	0			REV__ENST00000435576.2_1_1:48241052-48459876:-|nuORF	REV__ENST00000435576.2_1_1:48241052-48459876:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.27276611328125	2	482.260925	962.507297	0.36056	0.00017388	-0.027255	-1.3144E-05	0.3333	0.00016074	482.2608866686143	80.844	0.42764	80.867	80.708	81.136	0.023605					22	14	2	0	0	0	0.32091	1	19546	19546		39.957	0.0076237	1	166570	+		16653	11124	11017	11130	22436	22436					0.02454365177618456
QQEKWMLE	8	Unmodified	_QQEKWMLE_					0	0	0		nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	nc|ENSG00000068400|Q4V328-4|GRIPAP1	nc|ENSG00000068400|Q4V328-4|GRIPAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2649536132812	2	546.263142	1090.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.156	1	24.156	23.656	24.656	0								0	0	0	0.38822	1	2605	2605		0.6015	0	1				16654	729	11018	11131	22437	22437					-0.02990493671131844
QQEQQQAKV	9	Unmodified	_QQEQQQAKV_					0	0	0		ENST00000490702.1_1_X:53455445-53456137:+|nuORF;nc|ENSG00000158423|Q8N443-2|RIBC1;ENSG00000158423|ENST00000375327|RIBC1	ENST00000490702.1_1_X:53455445-53456137:+|nuORF	ENST00000490702.1_1_X:53455445-53456137:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2450561523438	2	543.780544	1085.54654	0.20831	0.00011328	-0.13688	-7.4434E-05	0.071432	3.8844E-05	544.2820574664951	48.678	0.69383	48.678	48.311	49.004	0					43	23	3	0	0	0	0.25787	1	9994	9994		2.9952	0.69251	1	92799			16655	3690	11019	11132	22438	22438					0.0071846546118194965
QQEQQQAKV	9	Unmodified	_QQEQQQAKV_					0	0	0		ENST00000490702.1_1_X:53455445-53456137:+|nuORF;nc|ENSG00000158423|Q8N443-2|RIBC1;ENSG00000158423|ENST00000375327|RIBC1	ENST00000490702.1_1_X:53455445-53456137:+|nuORF	ENST00000490702.1_1_X:53455445-53456137:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	543.780544	1085.54654	0.30028	0.00016329	0.036405	1.9797E-05	0.33669	0.00018308	544.2822041920738	48.49	0.42181	48.57	48.301	48.722	0.080029	-0.054166	0.00010596	NaN	2.9952	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67308			16656	3690	11019	11132							0.0071846546118194965
QQFDWNQFRAF	11	Unmodified	_QQFDWNQFRAF_					0	0	0		ENSG00000171316|ENST00000423902|CHD7	ENSG00000171316|ENST00000423902|CHD7	ENSG00000171316|ENST00000423902|CHD7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.23370361328125	3	496.233592	1485.67895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.62	1	54.62	54.12	55.12	0								0	0	0	0.33121	1	11721	11721		3.8459	2.6311	1				16657	4433	11020	11133	22439	22439					-0.04446509802028231
QQGQIYQL	8	Unmodified	_QQGQIYQL_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7688903808594	2	489.256174	976.497795	-0.17689	-8.6545E-05	0.065429	3.2012E-05	-0.11146	-5.4533E-05	489.2559190145691	40.355	0.70311	40.444	40.04	40.743	0.089645					35	26	2	0	0	0	0.3576	1	7269	7269		4.756	0	1	45142	+		16658	10534	11021	11134	22440	22440					0.008605968920733176
QQGVRQYFL	9	Unmodified	_QQGVRQYFL_					0	0	0			REV__ENSG00000173548|ENST00000308527|SNX33	REV__ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.8038330078125	2	569.803823	1137.59309	-0.051096	-2.9115E-05	0.068927	3.9275E-05	0.01783	1.016E-05	569.8038522197901	39.566	1.2757	39.566	39.347	40.623	0					80	45	3	0	0	0	0.16036	1	7197	7197		23.148	0.41214	1	226450	+		16659	10323	11022	11135	22441	22441					0.029799500831359182
QQIKNQLFF	9	Unmodified	_QQIKNQLFF_					0	0	0			REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2799682617188	2	583.321848	1164.62914	0.69866	0.00040754	-0.40307	-0.00023512	0.29559	0.00017243	583.3215357524086	70.224	0.49307	70.224	70.09	70.583	0					36	18	3	0	0	0	0.24263	1	16548	16548		12.532	4.6214	1	210560	+		16660	12560	11023	11136	22442	22442					0.053414072599935025
QQIKNQLFF	9	Unmodified	_QQIKNQLFF_					0	0	0			REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	583.321848	1164.62914	0.74901	0.00043691	-0.36121	-0.0002107	0.3878	0.00022621	583.3215914109844	70.162	0.47378	70.222	70.033	70.507	0.060562	-0.00078022	3.4981E-05	NaN	12.532	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220880	+		16661	12560	11023	11136							0.053414072599935025
QQILDLHDF	9	Unmodified	_QQILDLHDF_					0	0	0		ENSG00000135414|ENST00000257868|GDF11	ENSG00000135414|ENST00000257868|GDF11	ENSG00000135414|ENST00000257868|GDF11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.799560546875	2	564.787838	1127.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.112	1	90.146	89.646	90.646	0.034065								0	0	0	0.22786	1	22380	22380		13.906	0	1				16662	2727	11024	11137	22443	22443					0.0024453760931919533
QQITWQTFL	9	Unmodified	_QQITWQTFL_					0	0	0		nc|ENSG00000069667|P35398-4|RORA;ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-3|RORA;nc|ENSG00000069667|P35398-1|RORA	nc|ENSG00000069667|P35398-4|RORA	nc|ENSG00000069667|P35398-4|RORA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2799682617188	2	582.806031	1163.59751	0.65522	0.00038187	1.936	0.0011283	2.5912	0.0015102	582.8055949110072	70.72	0.94202	70.72	70.418	71.36	0					85	32	4	0	0	0	0.23598	1	16548	16548		15.847	6.4997	1	875910			16663	747	11025	11138	22444	22444					0.02225414506051493
QQLCFVQLR	9	Unmodified	_QQLCFVQLR_					0	0	0		ENST00000487562.5_1_1:147121842-147121989:-|nuORF	ENST00000487562.5_1_1:147121842-147121989:-|nuORF	ENST00000487562.5_1_1:147121842-147121989:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.8081665039062	2	567.808051	1133.60155	-0.51015	-0.00028967	0.41454	0.00023538	-0.095613	-5.429E-05	567.8083341615943	42.262	1.3758	42.262	41.856	43.231	0					83	47	3	0	0	0	0.25875	1	7968	7968		1.8442	0.19162	1	145700			16664	6791	11026	11139	22445	22445					0.04009180728098727
QQLEEERIQ	9	Unmodified	_QQLEEERIQ_					0	0	0		nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.3015747070312	2	586.798934	1171.58332	0.44124	0.00025892	-0.3085	-0.00018103	0.13274	7.7893E-05	586.7986235108111	36.899	0.33515	36.899	36.751	37.086	0					23	12	2	0	0	0	0.33849	1	6394	6394		1.6526	0	1	39586			16665	5112	11027	11140	22446	22446					0.004387172871020084
QQLIEVEI	8	Unmodified	_QQLIEVEI_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2740478515625	2	486.274032	970.533512	0.23796	0.00011572	0.075732	3.6827E-05	0.3137	0.00015254	486.2740008771157	74.731	1.1365	74.731	74.452	75.589	0					123	42	4	0	0	0	0.46028	1	18081	18081		18.146	1.2041	1	3103300			16666	5566	11028	11141	22447	22447					0.0470663434908829
QQLIEVEI	8	Unmodified	_QQLIEVEI_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2745361328125	2	486.274032	970.533512	0.16022	7.7909E-05	0.066166	3.2175E-05	0.22638	0.00011008	486.2740198477992	75.16	0.43167	75.204	75.115	75.546	0.044037					25	15	2	0	0	0	0.46028	1	17900	17900		18.146	1.9972	1	624430			16667	5566	11028	11141	22448	22448					0.0470663434908829
QQLNEFRE	8	Unmodified	_QQLNEFRE_					0	0	0		ENST00000533607.1_2_12:55377941-55378527:-|nuORF	ENST00000533607.1_2_12:55377941-55378527:-|nuORF	ENST00000533607.1_2_12:55377941-55378527:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2620239257812	2	532.261988	1062.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.529	1	33.529	33.029	34.029	0								0	0	0	0.38822	1	5345	5345		2.3027	0	1				16668	7039	11029	11142	22449	22449					-0.019332060845727028
QQLQYQQPS	9	Unmodified	_QQLQYQQPS_					0	0	0		nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8087158203125	2	560.275095	1118.53564	-0.49772	-0.00027886	-0.99961	-0.00056005	-1.4973	-0.00083892	560.2744831922986	41.785	0.6109	41.785	41.609	42.22	0					28	21	2	0	0	0	0.25051	1	7953	7953		7.9102	0	1	36972			16669	640	11030	11143	22450	22450					-0.018889369131102285
QQPAPQPLL	9	Unmodified	_QQPAPQPLL_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.28216552734375	2	496.282192	990.549831	0.38564	0.00019139	-0.25016	-0.00012415	0.13548	6.7237E-05	496.282006426507	50.443	0.37815	50.516	50.319	50.697	0.07312					24	12	2	0	0	0	0.22344	1	10312	10312		15.847	0	1	128120	+		16670	12994	11031	11144	22451	22451					0.054177603058633395
QQPDEQRR	8	Unmodified	_QQPDEQRR_					0	0	0		HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL	HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7647705078125	2	528.762686	1055.51082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.759	1	29.835	29.335	30.335	0.075403								0	0	0	0.38822	1	4104	4104		2.0598	0	1				16671	1433	11032	11145	22452	22452					-0.014715719958076079
QQQHGNGA	8	Unmodified	_QQQHGNGA_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.19140625	2	420.191365	838.368178	0.045039	1.8925E-05	0.11336	4.7633E-05	0.1584	6.6558E-05	420.19135421328343	87.365	0.98857	87.393	86.944	87.933	0.027573					88	39	3	0	0	0	0.53817	1	21632	21632		2.5775	0	1	670670			16672	4514	11033	11146	22453	22453					-0.05747159667180313
QQQHQHNMVL	10	Unmodified	_QQQHQHNMVL_					0	0	0			REV__ENSG00000018408|ENST00000360632|WWTR1	REV__ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.8079833984375	2	631.806571	1261.59859	0.21079	0.00013318	2.2954	0.0014503	2.5062	0.0015834	631.8077772517756	76.317	0.50708	76.317	76.195	76.702	0					37	18	3	0	0	0	0.44246	1	18391	18391		6.2058	0	1	504150	+		16673	7994	11034	11147	22454	22454					-0.021746943967173138
QQQKIRYDE	9	Unmodified	_QQQKIRYDE_					0	0	0			REV__KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant	REV__KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.30712890625	2	604.306926	1206.5993	0.10087	6.0954E-05	-0.35732	-0.00021593	-0.25646	-0.00015498	604.306923849125	30.87	0.28905	30.87	30.712	31.001	0					19	13	2	0	0	0	0.34704	1	4545	4545		0.52476	0	1	13446	+		16674	8069	11035	11148	22455	22455					0.0042642352398161165
QQQLQDVL	8	Unmodified	_QQQLQDVL_					0	0	0			REV__nc|ENSG00000167110|Q08379-2|GOLGA2	REV__nc|ENSG00000167110|Q08379-2|GOLGA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.24322509765625	2	486.261456	970.50836	-0.28131	-0.00013679	-0.48658	-0.0002366	-0.76788	-0.00037339	486.26114088343877	31.498	0.076912	31.572	31.537	31.613	0.073782					5	3	2	0	0	0	0.3576	1	4614	4614		0.69038	0	1	16196	+		16675	10106	11036	11149	22456	22456					0.021925795465108422
QQRAEQLLA	9	Unmodified	_QQRAEQLLA_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.793212890625	2	528.793455	1055.57236	-0.061534	-3.2539E-05	-0.28673	-0.00015162	-0.34826	-0.00018416	528.7933204082073	33.318	0.45299	33.318	33.175	33.628	0					38	16	4	0	0	0	0.29576	1	5291	5291		7.2892	0	1	69969	+		16676	8731	11037	11150	22457	22457					0.04679359703482078
QQREEFQR	8	Unmodified	_QQREEFQR_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7659301757812	2	560.778336	1119.54212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.193	1	36.275	35.775	36.775	0.081715								0	0	0	0.38822	1	6024	6024		7.9102	1.187	1		+		16677	12853	11038	11151	22458	22458					-0.01286998961700192
QQRLLGAQ	8	Unmodified	_QQRLLGAQ_					0	0	0			REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2644348144531	2	457.264333	912.514114	0.010589	4.8418E-06	0.2766	0.00012648	0.28719	0.00013132	457.2644325430741	89.945	0.23955	89.979	89.796	90.035	0.034065					13	8	3	0	0	0	0.53494	1	22343	22343		4.756	0.42677	1	281340	+		16678	9373	11039	11152	22459	22459					0.05435722848869773
QQRPCGVISPF	11	Unmodified	_QQRPCGVISPF_					0	0	0			REV__ENSG00000222038|ENST00000409602|POTEJ	REV__ENSG00000222038|ENST00000409602|POTEJ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.2996215820312	2	616.31624	1230.61793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.224	1	79.224	78.724	79.724	0								0	0	0	0.3155	1	19226	19226		9.3831	1.473	1		+		16679	11024	11040	11153	22460	22460					0.011842618941955152
QQRPPHLVHH	10	Unmodified	_QQRPPHLVHH_					0	0	0		POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant;ENSG00000184486|ENST00000328345|POU3F2	POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant	POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8406372070312	2	624.839062	1247.66357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.318	1	78.318	77.818	78.818	0								0	0	0	0.33877	1	18950	18950		1.6526	0.32309	1				16680	4981	11041	11154	22461	22461					0.04964668191450983
QQSRGRQRAE	10	Unmodified	_QQSRGRQRAE_					0	0	0		ENST00000424460.1_1_7:8380649-8382766:+|nuORF;ENST00000435967.1_1_7:8380649-8380892:+|nuORF	ENST00000424460.1_1_7:8380649-8382766:+|nuORF	ENST00000424460.1_1_7:8380649-8382766:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8677062988281	3	405.881553	1214.62283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.009	1	42.099	41.599	42.599	0.089764								0	0	0	0.33894	1	7772	7772		1.4551	0.24029	1				16681	6462	11042	11155	22462	22462					0.02410282081200421
QQVDETLRQ	9	Unmodified	_QQVDETLRQ_					0	0	0		nc|ENSG00000116885|Q8WVF1-4|OSCP1;nc|ENSG00000116885|Q8WVF1-2|OSCP1;ENSG00000116885|ENST00000235532|OSCP1;nc|ENSG00000116885|Q8WVF1|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7852783203125	2	558.785827	1115.5571	-0.083431	-4.662E-05	-0.56992	-0.00031847	-0.65335	-0.00036509	558.7855164516214	25.887	0.35504	25.887	25.735	26.09	0					47	26	2	0	0	0	0.30757	1	3116	3116		5.7319	0	1	44611			16682	7488	11043	11156	22463	22463					0.003944481156167967
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8087768554688	2	629.808771	1257.60299	0.29316	0.00018463	-0.092719	-5.8395E-05	0.20044	0.00012624	629.8085588995335	70.938	1.24	70.938	70.708	71.948	0					131	43	6	0	0	0	0.25276	3	16652	16652;16749;16866		27.629	1.3607	1	2331500	+		16683	9292	11044	11157	22464;22465;22466	22464					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3135375976562	2	629.808771	1257.60299	0.58527	0.00036861	-0.30821	-0.00019412	0.27706	0.00017449	629.8084236521353	70.855	1.2059	70.913	70.557	71.763	0.058578					112	40	4	0	0	0	0.19399	4	16479	16479;16486;16577;16682		34.402	1.616	1	1974000	+		16684	9292	11044	11157	22467;22468;22469;22470	22467					-0.015509067021639567
QQYQEATF	8	Unmodified	_QQYQEATF_					0	0	0			REV__nc|ENSG00000120616|Q9H2F5-3|EPC1	REV__nc|ENSG00000120616|Q9H2F5-3|EPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2459716796875	2	507.729989	1013.44543	0.18308	9.2956E-05	1.8074	0.00091765	1.9904	0.0010106	507.730770325279	37.033	0.74777	37.033	36.721	37.469	0					41	28	2	0	0	0	0.51887	1	6452	6452		10.183	4.423	1	39756	+		16685	8879	11045	11158	22471	22471					-0.060759862415238786
QQYQEATF	8	Unmodified	_QQYQEATF_					0	0	0			REV__nc|ENSG00000120616|Q9H2F5-3|EPC1	REV__nc|ENSG00000120616|Q9H2F5-3|EPC1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	507.729989	1013.44543	0.18308	9.2956E-05	1.8074	0.00091765	1.9904	0.0010106	507.730770325279	37.033	0.74777	37.033	36.721	37.469	0	0.0098029	-7.2904E-05	NaN	10.183	41	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39756	+		16686	8879	11045	11158							-0.060759862415238786
QQYQEATF	8	Unmodified	_QQYQEATF_					0	0	0			REV__nc|ENSG00000120616|Q9H2F5-3|EPC1	REV__nc|ENSG00000120616|Q9H2F5-3|EPC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	507.729989	1013.44543	0.21213	0.0001077	1.9497	0.00098993	2.1618	0.0010976	507.7308987838212	36.931	0.49347	37.013	36.717	37.211	0.081715	-0.0098029	7.1658E-05	NaN	10.183	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38544	+		16687	8879	11045	11158							-0.060759862415238786
QRARIDVI	8	Unmodified	_QRARIDVI_					0	0	0			REV__ENSG00000196090|ENST00000373187|PTPRT	REV__ENSG00000196090|ENST00000373187|PTPRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7947082519531	2	485.793258	969.571963	0.25586	0.00012429	2.7342	0.0013282	2.99	0.0014525	485.79437788446904	91.966	0.32102	91.966	91.815	92.136	0					22	11	3	0	0	0	0.51415	1	23143	23143		10.824	0	1	122310	+		16688	10797	11046	11159	22472	22472					0.08595984774274257
QRCGWIPI	8	Unmodified	_QRCGWIPI_					0	0	0		ENSG00000183691|ENST00000332822|NOG	ENSG00000183691|ENST00000332822|NOG	ENSG00000183691|ENST00000332822|NOG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.24322509765625	2	486.75783	971.501106	-0.30649	-0.00014919	1.7446	0.00084919	1.4381	0.0007	486.7586215873375	31.968	0.43042	31.968	31.676	32.107	0					21	17	2	0	0	0	0.3576	1	4802	4802		0.79363	0	1	20291			16689	4934	11047	11160	22473	22473					0.014215684651162519
QRCRAAVQ	8	Unmodified	_QRCRAAVQ_					0	0	0		ENST00000356554.7_1_1:118067591-118067774:+|nuORF	ENST00000356554.7_1_1:118067591-118067774:+|nuORF	ENST00000356554.7_1_1:118067591-118067774:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.2479553222656	2	466.24816	930.481768	0.51134	0.00023841	-1.2677	-0.00059107	-0.75638	-0.00035266	466.24743197248756	70.508	0.37644	70.508	70.298	70.675	0					20	13	2	0	0	0	0.37883	1	16567	16567		28.487	6.7402	1	138210			16690	6123	11048	11161	22474	22474					0.013746121741974093
QRCRAAVQ	8	Unmodified	_QRCRAAVQ_					0	0	0		ENST00000356554.7_1_1:118067591-118067774:+|nuORF	ENST00000356554.7_1_1:118067591-118067774:+|nuORF	ENST00000356554.7_1_1:118067591-118067774:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	466.24816	930.481768	0.33582	0.00015657	-0.95592	-0.0004457	-0.62011	-0.00028912	466.24753672760124	70.404	0.33807	70.464	70.332	70.67	0.060562	-0.022189	0.00011199	NaN	28.487	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92787			16691	6123	11048	11161							0.013746121741974093
QREGDTVPSFL	11	Unmodified	_QREGDTVPSFL_					0	0	0		ENST00000546704.1_1_12:57868176-57868820:-|nuORF;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9	ENST00000546704.1_1_12:57868176-57868820:-|nuORF	ENST00000546704.1_1_12:57868176-57868820:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8112182617188	2	624.814584	1247.61462	0.04896	3.0591E-05	-2.4129	-0.0015076	-2.364	-0.001477	624.8130850168159	77.592	0.45573	77.592	77.413	77.869	0					30	16	3	0	0	0	0.37533	1	18744	18744		9.3831	1.7742	1	173170			16692	2211	11049	11162	22475	22475					0.0007129032119337353
QREQAWAL	8	Unmodified	_QREQAWAL_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.26116943359375	2	501.261791	1000.50903	0.06029	3.0221E-05	-0.99332	-0.00049791	-0.93303	-0.00046769	501.2611996520476	58.373	0.39574	58.373	58.256	58.652	0					37	14	4	0	0	0	0.51415	1	12832	12832		10.824	0.75	1	1060800	+		16693	9295	11050	11163	22476	22476					0.008794189862214807
QRERLNQILL	10	Unmodified	_QRERLNQILL_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.882568359375	2	641.883136	1281.75172	0.31039	0.00019924	-0.88194	-0.0005661	-0.57155	-0.00036687	641.8823509531409	88.617	0.77555	88.617	88.181	88.956	0					79	30	3	0	0	0	0.46656	1	22178	22178		1.6526	0.32309	1	407930			16694	1960	11051	11164	22477	22477					0.12211243991418996
QRGWPFAAIFP	11	Unmodified	_QRGWPFAAIFP_					0	0	0			REV__ENST00000292174.4_1_11:118765378-118765417:+|nuORF	REV__ENST00000292174.4_1_11:118765378-118765417:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.3427734375	2	645.343115	1288.67168	0.45039	0.00029066	-1.3531	-0.00087323	-0.90273	-0.00058257	645.3423013633911	67.852	0.57812	67.916	67.728	68.306	0.063507					35	20	3	0	0	0	0.40693	1	15704	15704		2.7352	0.64919	1	222170	+		16695	11320	11052	11165	22478	22478					0.03888802388200929
QRIVDEMWL	9	Unmodified	_QRIVDEMWL_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2664794921875	2	595.305341	1188.59613	0.16588	9.8751E-05	3.9909	0.0023758	4.1568	0.0024746	595.3072917891806	82.97	0.21645	82.992	82.851	83.068	0.021744					9	7	2	0	0	0	0.2229	1	20224	20224		19.257	9.9096	1	63439	+		16696	8780	11053	11166	22479	22479					0.00937457145641929
QRKNPKDGNF	10	Unmodified	_QRKNPKDGNF_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778991699219	3	401.879149	1202.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.947	1	25.043	24.543	25.543	0.096073								0	0	0	0.33877	1	2706	2706		0.69767	0	1				16697	3969	11054	11167	22480	22480					0.022415494807546565
QRKSRGEKNP	10	Unmodified	_QRKSRGEKNP_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3340454101562	2	600.33381	1198.65307	0.34927	0.00020968	0.31213	0.00018738	0.6614	0.00039706	600.3338160642502	88.125	1.9043	88.155	87.237	89.141	0.030037					139	74	3	0	0	0	0.44496	1	21784	21784		5.7319	1.4026	1	928050			16698	4571	11055	11168	22481	22481					0.061686407463867
QRLRRHSYE	9	Unmodified	_QRLRRHSYE_					0	0	0			REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8751220703125	3	415.55841	1243.6534	-0.28776	-0.00011958	-0.39926	-0.00016592	-0.68703	-0.0002855	415.55809097835925	28.852	0.24475	28.931	28.829	29.074	0.078287					26	18	2	0	0	0	0.25989	1	3842	3842		0.23584	0	1	9094.3	+		16699	11921	11056	11169	22482	22482					0.04132060466235998
QRLRRHSYE	9	Unmodified	_QRLRRHSYE_					0	0	0			REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	415.55841	1243.6534	0.048556	2.0178E-05	-1.4124	-0.00058693	-1.3638	-0.00056675	415.55763207099517	28.952	0.29646	28.952	28.801	29.098	0	0.010557	-0.0007948	NaN	0.23584	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16139	+		16700	11921	11056	11169							0.04132060466235998
QRNGYGRP	8	Unmodified	_QRNGYGRP_					0	0	0			REV__ENSG00000089289|ENST00000356413|IGBP1	REV__ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7816467285156	2	474.243932	946.473312	-0.32597	-0.00015459	-1.224	-0.00058047	-1.55	-0.00073507	474.2433478159937	33.293	0.49474	33.293	33.08	33.574	0					22	18	2	0	0	0	0.3576	1	5282	5282		2.3027	0	1	17079	+		16701	8296	11057	11170	22483	22483					-0.0020661847075871265
QRNNEEKL	8	Unmodified	_QRNNEEKL_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2537841796875	2	515.767437	1029.52032	0.039148	2.0191E-05	0.12065	6.2226E-05	0.1598	8.2417E-05	515.7674654494119	23.814	0.26921	23.914	23.745	24.014	0.099739					29	25	2	0	0	0	0.3576	1	2400	2400		2.0598	0	1	20164	+		16702	10861	11058	11171	22484	22484					0.0067419628969673795
QRPAVSRSLKL	11	Unmodified	_QRPAVSRSLKL_					0	0	0		ENST00000605573.1_1_3:187871604-187871808:-|nuORF	ENST00000605573.1_1_3:187871604-187871808:-|nuORF	ENST00000605573.1_1_3:187871604-187871808:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8853759765625	2	627.885678	1253.7568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.821	1	95.821	95.321	96.321	0								0	0	0	0.33873	1	24274	24274		1.1933	0	1				16703	7307	11059	11172	22485	22485					0.1400754785402114
QRPAVSRSLKL	11	Unmodified	_QRPAVSRSLKL_					0	0	0		ENST00000605573.1_1_3:187871604-187871808:-|nuORF	ENST00000605573.1_1_3:187871604-187871808:-|nuORF	ENST00000605573.1_1_3:187871604-187871808:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8843994140625	2	627.885678	1253.7568	0.27495	0.00017263	-0.87335	-0.00054836	-0.59841	-0.00037573	627.8851817953946	95.534	0.64997	95.573	95.386	96.036	0.038864					47	31	2	0	0	0	0.41369	1	24097	24097		1.1933	0.23107	1	390430			16704	7307	11059	11172	22486	22486					0.1400754785402114
QRPGRLAA	8	Unmodified	_QRPGRLAA_					0	0	0			REV__ENST00000357081.7_2_9:88327462-88356793:-|nuORF	REV__ENST00000357081.7_2_9:88327462-88356793:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.7591857910156	2	434.759218	867.503883	0.17057	7.4156E-05	-0.035744	-1.554E-05	0.13482	5.8616E-05	434.75913448430816	82.559	1.1694	82.581	82.27	83.44	0.021744					91	41	4	0	0	0	0.53858	1	20187	20187		2.3027	0	1	1727800	+		16705	11513	11060	11173	22487	22487					0.0648315991426216
QRQRHVRLHQK	11	Unmodified	_QRQRHVRLHQK_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.9588623046875	3	495.958908	1484.85489	0.70329	0.0003488	-0.37516	-0.00018606	0.32813	0.00016274	495.9586116921887	98.06	2.0454	98.06	97.387	99.433	0					237	116	4	0	0	0	0.4167	1	25071	25071		0.50596	0.50596	1	494510	+		16706	10158	11061	11174	22488	22488					0.13186169222581157
QRQRHVRLHQK	11	Unmodified	_QRQRHVRLHQK_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.958984375	3	495.958908	1484.85489	0.36308	0.00018007	0.18439	9.145E-05	0.54747	0.00027152	496.2933768485622	95.557	0.40509	95.596	95.54	95.945	0.038872					29	19	2	0	0	0	0.4167	1	24075	24075		0.50596	0	1	356980	+		16707	10158	11061	11174	22489	22489					0.13186169222581157
QRQRHVRLHQK	11	Unmodified	_QRQRHVRLHQK_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.9585266113281	3	495.958908	1484.85489	0.51232	0.00025409	-0.10891	-5.4016E-05	0.40341	0.00020008	495.95866189251626	96.307	1.4826	96.347	95.876	97.359	0.039772					168	76	3	0	0	0	0.4167	3	24195	24195;24368;24400		0.50596	0.051438	1	267480	+		16708	10158	11061	11174	22490;22491;22492	22490					0.13186169222581157
QRQRHVRLHQK	11	Unmodified	_QRQRHVRLHQK_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.9587097167969	3	495.958908	1484.85489	0.65682	0.00032576	-0.33615	-0.00016671	0.32068	0.00015904	495.95862592045125	98.041	2.09	98.083	97.227	99.317	0.041939					248	116	4	0	0	0	0.4167	2	24667	24667;24751		0.50596	0.41111	1	514250	+		16709	10158	11061	11174	22493;22494	22493					0.13186169222581157
QRQWQVVW	8	Unmodified	_QRQWQVVW_					0	0	0			REV__ENST00000278550.11_1_11:78482086-78482179:-|nuORF	REV__ENST00000278550.11_1_11:78482086-78482179:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7708740234375	2	565.298707	1128.58286	0.22379	0.00012651	-1.129	-0.00063822	-0.90521	-0.00051171	565.298132053845	90.485	0.33012	90.485	90.327	90.657	0					16	11	2	0	0	0	0.35759	1	22672	22672		12.532	0	1	47262	+		16710	11288	11062	11175	22495	22495					0.023713871485597338
QRRGRLGVF	9	Unmodified	_QRRGRLGVF_					0	0	0			REV__CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant	REV__CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8253784179688	2	544.825424	1087.63629	0.59079	0.00032187	-1.3166	-0.00071732	-0.72582	-0.00039544	544.8245448321354	92.598	0.44558	92.598	92.405	92.851	0					35	16	3	0	0	0	0.3182	2	23274	23274;23319		4.3292	1.7518	1	142990	+		16711	7755	11063	11176	22496;22497	22496					0.09598184651076735
QRRGRLGVF	9	Unmodified	_QRRGRLGVF_					0	0	0			REV__CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant	REV__CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.8250122070312	2	544.825424	1087.63629	0.57658	0.00031413	-1.2397	-0.00067544	-0.66315	-0.0003613	544.8246071816435	92.61	0.60027	92.647	92.371	92.971	0.03653					32	21	2	0	0	0	0.29576	1	23108	23108		7.2892	2.96	1	156540	+		16712	7755	11063	11176	22498	22498					0.09598184651076735
QRRLDILS	8	Unmodified	_QRRLDILS_					0	0	0			REV__ENSG00000166323|ENST00000393084|C11orf65	REV__ENSG00000166323|ENST00000393084|C11orf65	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.79864501953125	2	500.79854	999.582528	0.31614	0.00015832	0.20208	0.0001012	0.51822	0.00025952	500.7985392421515	88.915	0.57107	88.947	88.679	89.25	0.032265					55	22	3	0	0	0	0.53494	1	22066	22066		4.756	0	1	496230	+		16713	10071	11064	11177	22499	22499					0.08271967428709104
QRRLVGKF	8	Unmodified	_QRRLVGKF_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.3130187988281	2	502.311618	1002.60868	0.34143	0.00017151	2.6166	0.0013143	2.958	0.0014858	502.3126226857032	73.772	0.34529	73.824	73.621	73.966	0.052574					23	12	3	0	0	0	0.53423	1	17411	17411		5.2307	0	1	248460	+		16714	12748	11065	11178	22500	22500					0.10748281390851844
QRRLVGKF	8	Unmodified	_QRRLVGKF_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	502.311618	1002.60868	0.12265	6.1606E-05	2.7057	0.0013591	2.8284	0.0014207	502.3127368917153	73.844	0.31589	73.844	73.69	74.006	0	0.010031	4.1461E-05	NaN	5.2307	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212070	+		16715	12748	11065	11178							0.10748281390851844
QRRLVGKF	8	Unmodified	_QRRLVGKF_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	502.311618	1002.60868	0.34143	0.00017151	2.6166	0.0013143	2.958	0.0014858	502.3126226857032	73.772	0.34529	73.824	73.621	73.966	0.052574	-0.010031	-4.8099E-05	NaN	5.2307	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248460	+		16716	12748	11065	11178							0.10748281390851844
QRRQARLP	8	Unmodified	_QRRQARLP_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8093872070312	2	512.809774	1023.60499	0.47255	0.00024233	-0.87824	-0.00045037	-0.4057	-0.00020805	512.8091959121612	99.892	0.71854	99.892	99.743	100.46	0					79	40	3	0	0	0	0.53423	3	25493	25493;25542;25588		5.2307	0	1	791250	+		16717	11461	11066	11179	22501;22502;22503	22501					0.09413611616980688
QRRQARLP	8	Unmodified	_QRRQARLP_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8102416992188	2	512.809774	1023.60499	0.47255	0.00024233	-0.87824	-0.00045037	-0.4057	-0.00020805	512.8091959121612	99.892	0.71854	99.892	99.743	100.46	0					79	40	3	0	0	0	0.3576	1	25470	25470		2.3027	0	1	791250	+		16718	11461	11066	11179	22504	22504					0.09413611616980688
QRRRFLSV	8	Unmodified	_QRRRFLSV_					0	0	0			REV__ENST00000370076.2_1_1:107685885-107690770:+|nuORF	REV__ENST00000370076.2_1_1:107685885-107690770:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.31982421875	2	531.319974	1060.6254	0.33027	0.00017548	-1.428	-0.00075871	-1.0977	-0.00058324	531.3190733895401	89.215	0.9514	89.247	89.034	89.985	0.032265					81	35	4	0	0	0	0.52924	1	22088	22088		8.5933	0.68312	1	562280	+		16719	11588	11067	11180	22505	22505					0.09750782276796599
QRRRRGTLAAP	11	Unmodified	_QRRRRGTLAAP_					0	0	0			REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3848876953125	2	641.384168	1280.75378	0.43078	0.00027629	0.81452	0.00052242	1.2453	0.00079871	641.3847123161737	97.03	0.73767	97.071	96.766	97.503	0.040855					79	36	3	0	0	0	0.40693	1	24482	24482		2.7352	0	1	261220	+		16720	11700	11068	11181	22506	22506					0.12463717519904094
QRRRRGTLAAP	11	Unmodified	_QRRRRGTLAAP_					0	0	0			REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	641.384168	1280.75378	0.41095	0.00026357	0.97064	0.00062256	1.3816	0.00088613	641.3847476551957	96.97	0.64449	96.97	96.768	97.412	0	-0.050319	7.4395E-05	NaN	2.7352	77	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398670	+		16721	11700	11068	11181							0.12463717519904094
QRRSNIAFLL	10	Unmodified	_QRRSNIAFLL_					0	0	0			REV__ENSG00000180071|ENST00000399703|ANKRD18A	REV__ENSG00000180071|ENST00000399703|ANKRD18A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3173828125	2	609.359296	1216.70404	0.47636	0.00029028	1.6314	0.00099408	2.1077	0.0012844	609.3602724773078	94.532	0.39938	94.57	94.343	94.742	0.038086					25	15	3	0	0	0	0.31803	1	23760	23760		3.2813	0.28607	1	71864	+		16722	10497	11069	11182	22507	22507					0.10435589791245548
QRRVLRNLR	9	Unmodified	_QRRVLRNLR_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8848876953125	2	605.883804	1209.75306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.595	1	84.618	84.118	85.118	0.023125								0	0	0	0.28631	1	20700	20700		1.8442	0.36234	1				16723	4948	11070	11183	22508	22508					0.15656922870834933
QRRVRPALP	9	Unmodified	_QRRVRPALP_					0	0	0		ENST00000546828.6_1_12:98909466-98909845:+|nuORF	ENST00000546828.6_1_12:98909466-98909845:+|nuORF	ENST00000546828.6_1_12:98909466-98909845:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8406982421875	2	546.841074	1091.66759	0.29895	0.00016348	-0.79772	-0.00043622	-0.49876	-0.00027274	546.8404836352669	95.237	0.72429	95.237	94.998	95.723	0					64	32	3	0	0	0	0.21398	2	24116	24067;24116		16.942	2.104	1	842860			16724	7079	11071	11184	22509;22510	22510					0.12542757685173456
QRRVRPALP	9	Unmodified	_QRRVRPALP_					0	0	0		ENST00000546828.6_1_12:98909466-98909845:+|nuORF	ENST00000546828.6_1_12:98909466-98909845:+|nuORF	ENST00000546828.6_1_12:98909466-98909845:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8404541015625	2	546.841074	1091.66759	0.23886	0.00013062	-0.77652	-0.00042464	-0.53767	-0.00029402	546.8404920562343	95.276	0.56342	95.315	95.017	95.58	0.038872					60	23	3	0	0	0	0.21398	2	23898	23898;23941		16.942	2.104	1	977880			16725	7079	11071	11184	22511;22512	22511					0.12542757685173456
QRSLYIDLGA	10	Unmodified	_QRSLYIDLGA_					0	0	0		nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3291015625	2	568.308938	1134.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.222	1	58.292	57.792	58.792	0.070477								0	0	0	0.29381	1	12681	12681		18.373	1.2602	1				16726	1578	11072	11185	22513	22513					0.04140513017705416
QRSPGWFLL	9	Unmodified	_QRSPGWFLL_					0	0	0			REV__ENST00000536708.6_1_17:46058929-46059097:+|nuORF	REV__ENST00000536708.6_1_17:46058929-46059097:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7902221679688	2	552.303458	1102.59236	0.68239	0.00037689	2.1143	0.0011677	2.7967	0.0015446	552.3047662845528	79.552	0.92244	79.552	79.157	80.079	0					42	31	2	0	0	0	0.22344	1	19364	19364		15.847	1.0089	1	190010	+		16727	12388	11073	11186	22514	22514					0.04517155434109554
QRTFEKLEK	9	Unmodified	_QRTFEKLEK_					0	0	0		ENST00000514498.1_1_4:166327046-166327295:-|nuORF	ENST00000514498.1_1_4:166327046-166327295:-|nuORF	ENST00000514498.1_1_4:166327046-166327295:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8299560546875	2	589.830037	1177.64552	-0.049273	-2.9063E-05	0.10072	5.9409E-05	0.051449	3.0346E-05	589.8301302550763	27.21	2.2695	27.21	27.006	29.275	0					301	142	5	0	0	0	0.34754	1	3942	3942		0.45834	0.057624	1	1644400			16728	6929	11074	11187	22515	22515					0.06380488426066222
QRTVLNLYH	9	Unmodified	_QRTVLNLYH_					0	0	0			REV__nc|ENSG00000131096|P10082-2|PYY	REV__nc|ENSG00000131096|P10082-2|PYY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3170166015625	2	572.317097	1142.61964	0.12407	7.1009E-05	-0.20239	-0.00011583	-0.078317	-4.4822E-05	572.3168917881147	19.142	0.19341	19.232	19.16	19.353	0.089705					33	20	2	0	0	0	0.34704	1	1222	1222		0.52476	0	1	12911	+		16729	9078	11075	11188	22516	22516					0.05403638974439673
QRTVLNLYH	9	Unmodified	_QRTVLNLYH_					0	0	0			REV__nc|ENSG00000131096|P10082-2|PYY	REV__nc|ENSG00000131096|P10082-2|PYY	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	572.317097	1142.61964	-0.35893	-0.00020542	-0.024333	-1.3926E-05	-0.38327	-0.00021935	572.3171083530476	19.263	0.14369	19.263	19.213	19.357	0	0.015776	0.00013188	NaN	0.52476	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10446	+		16730	9078	11075	11188							0.05403638974439673
QRVDSCFTNVK	11	Unmodified	_QRVDSCFTNVK_					0	0	0			REV__ENST00000284881.8_2_21:19162276-19162378:-|nuORF	REV__ENST00000284881.8_2_21:19162276-19162378:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.8851623535156	3	432.883683	1295.62922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.068	1	62.068	61.568	62.568	0								0	0	0	0.33867	1	13990	13990		1.2148	0.021489	1		+		16731	11304	11076	11189	22517	22517					-0.006769608023205365
QRVPRIIEEK	10	Unmodified	_QRVPRIIEEK_					0	0	0			REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8777465820312	2	634.377686	1266.74082	-0.17277	-0.0001096	-0.64026	-0.00040616	-0.81303	-0.00051577	634.8782482948124	114.3	0.074036	114.3	114.26	114.34	0					17	10	2	0	0	0	0.46746	1	29203	29203		1.4819	0	1	60697	+		16732	7881	11077	11190	22518	22518					0.11811841617145546
QRVPRIIEEK	10	Unmodified	_QRVPRIIEEK_					0	0	0			REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	634.377686	1266.74082	0.24907	0.000158	-0.7804	-0.00049507	-0.53133	-0.00033706	634.8778435329905	114.13	0.034821	114.15	114.13	114.16	0.013336	-0.075851	-0.00015551	NaN	1.4819	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25158	+		16733	7881	11077	11190							0.11811841617145546
QRWTEPSYH	9	Unmodified	_QRWTEPSYH_					0	0	0			REV__ENST00000290943.10_1_9:33529005-33529062:+|nuORF	REV__ENST00000290943.10_1_9:33529005-33529062:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2804565429688	2	602.280712	1202.54687	0.12041	7.2519E-05	-0.037874	-2.2811E-05	0.082533	4.9708E-05	602.2806003473193	24.805	0.41714	24.901	24.787	25.204	0.096073					51	38	2	0	0	0	0.34704	1	2699	2699		0.52476	0	1	39463	+		16734	11317	11078	11191	22519	22519					-0.04630114818974107
QSAAANEEVL	10	Unmodified	_QSAAANEEVL_					0	0	0		CEP170|p.L346Gfs*8|1|0.62|ENSG00000143702|chr1:243191086-243191090|CATAG/-|frameshift_variant;ENST00000502249.6_1_4:119401524-119435218:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	CEP170|p.L346Gfs*8|1|0.62|ENSG00000143702|chr1:243191086-243191090|CATAG/-|frameshift_variant	CEP170|p.L346Gfs*8|1|0.62|ENSG00000143702|chr1:243191086-243191090|CATAG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7842407226562	2	516.253828	1030.4931	0.38847	0.00020055	-1.9774	-0.0010208	-1.5889	-0.0008203	516.2527601965656	85.964	0.39975	85.964	85.779	86.179	0					27	15	2	0	0	0	0.31667	1	21321	21321		8.7454	0.58988	1	159100			16735	124	11079	11192	22520	22520					-0.020923320413203328
QSALPHEM	8	Unmodified	_QSALPHEM_					0	0	0			REV__ENST00000263674.3_1_11:73078903-73079227:+|nuORF	REV__ENST00000263674.3_1_11:73078903-73079227:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7155456542969	2	456.715827	911.417102	-0.026949	-1.2308E-05	-0.068119	-3.1111E-05	-0.095069	-4.3419E-05	456.71570004934824	28.701	0.31619	28.701	28.584	28.9	0					26	15	2	0	0	0	0.53494	1	3937	3937		4.756	0.42677	1	26960	+		16736	11244	11080	11193	22521	22521					-0.04215007422453709
QSAPQLADAL	10	Unmodified	_QSAPQLADAL_					0	0	0			REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.266845703125	2	507.266739	1012.51892	0.11185	5.6737E-05	0.071481	3.626E-05	0.18333	9.2997E-05	507.2666572576674	38.94	0.59798	38.94	38.781	39.379	0					41	22	3	0	0	0	0.35616	2	6975	6975;6991		16.566	2.6598	1	160390	+		16737	12122	11081	11194	22522;22523	22522					0.013165622009523759
QSAPQLADAL	10	Unmodified	_QSAPQLADAL_					0	0	0			REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.782470703125	2	507.266739	1012.51892	0.23059	0.00011697	-0.14093	-7.1491E-05	0.08966	4.5481E-05	507.2664601122809	38.849	0.46006	38.936	38.717	39.178	0.08688					38	17	3	0	0	0	0.30917	1	6835	6835		21.59	3.2171	1	123610	+		16738	12122	11081	11194	22524	22524					0.013165622009523759
QSCLPTQLVCP	11	Unmodified	_QSCLPTQLVCP_					0	0	0			REV__ENSG00000179627|ENST00000342537|ZBTB42	REV__ENSG00000179627|ENST00000342537|ZBTB42	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.80615234375	2	594.791209	1187.56787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.459	1	49.459	48.959	49.959	0								0	0	0	0.33503	1	10148	10148		2.4985	0.43874	1		+		16739	10483	11082	11195	22525	22525					-0.018416088259527896
QSCPDYIELN	10	Unmodified	_QSCPDYIELN_					0	0	0			REV__ENSG00000111404|ENST00000538724|RERGL	REV__ENSG00000111404|ENST00000538724|RERGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.27734375	2	591.260796	1180.50704	0.72274	0.00042733	0.39666	0.00023453	1.1194	0.00066185	591.2609356513944	85.014	0.64451	85.014	84.838	85.482	0					63	22	4	0	0	0	0.29844	1	21084	21084		22.736	3.4793	1	1202600	+		16740	8687	11083	11196	22526	22526					-0.07599422604562278
QSCPDYIELN	10	Unmodified	_QSCPDYIELN_					0	0	0			REV__ENSG00000111404|ENST00000538724|RERGL	REV__ENSG00000111404|ENST00000538724|RERGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.2772827148438	2	591.260796	1180.50704	0.73616	0.00043526	0.44134	0.00026095	1.1775	0.00069621	591.2609601896768	85.051	0.65011	85.074	84.877	85.527	0.023125					62	26	3	0	0	0	0.29844	1	20919	20919		22.736	0.078198	1	1099200	+		16741	8687	11083	11196	22527	22527					-0.07599422604562278
QSDPRAEEL	9	Unmodified	_QSDPRAEEL_					0	0	0		ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7511596679688	2	522.751453	1043.48835	-0.12854	-6.7195E-05	-0.58454	-0.00030557	-0.71308	-0.00037276	522.7510837633524	30.764	0.48315	30.764	30.594	31.078	0					55	23	3	0	0	0	0.24767	1	4509	4509		13.042	3.6593	1	132450			16742	4134	11084	11197	22528	22528					-0.03165216184106612
QSDPRAEEL	9	Unmodified	_QSDPRAEEL_					0	0	0		ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7515258789062	2	522.751453	1043.48835	-0.15979	-8.3532E-05	-0.43008	-0.00022482	-0.58987	-0.00030835	522.7512050605026	30.722	0.49441	30.797	30.637	31.131	0.075403					59	27	3	0	0	0	0.27332	1	4405	4405		10.074	1.3285	1	108860			16743	4134	11084	11197	22529	22529					-0.03165216184106612
QSEAGSHTL	9	Unmodified	_QSEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.21954345703125	2	465.219788	928.425024	-0.27624	-0.00012851	-0.37888	-0.00017626	-0.65512	-0.00030477	465.219671585017	21.264	1.3151	21.264	21.078	22.393	0					352	128	6	0	0	0	8.6872E-13	4	1811	1781;1811;1840;1851		183.04	0	1	1359200			16744	5489;5482	11085	11198	22530;22531;22532;22533	22531					-0.04205156901321061
QSEAGSHTL	9	Unmodified	_QSEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	465.219788	928.425024	-0.11647	-5.4185E-05	-0.47155	-0.00021938	-0.58802	-0.00027356	465.219632550974	21.117	0.92453	21.217	21.026	21.95	0.099499	-0.023733	-4.4913E-05	NaN	183.04	268	99	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1374300			16745	5489;5482	11085	11198							-0.04205156901321061
QSEDGSHTL	9	Unmodified	_QSEDGSHTL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2145690917969	2	487.214703	972.414853	-0.45487	-0.00022162	0.16381	7.9809E-05	-0.29106	-0.00014181	487.2147625493137	21.497	1.1491	21.497	21.308	22.457	0					298	106	5	0	0	0	0.0010022	3	1902	1833;1868;1902		123.45	75.702	1	968650			16746	5476	11086	11199	22534;22535;22536	22536					-0.07245764626543405
QSEDGSHTL	9	Unmodified	_QSEDGSHTL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2147216796875	2	487.214703	972.414853	-0.10152	-4.9463E-05	-0.073166	-3.5647E-05	-0.17469	-8.5111E-05	487.2146309562919	21.346	0.90344	21.447	21.231	22.134	0.10178					222	96	4	0	0	0	0.0042692	3	1733	1698;1733;1765		99.799	59.849	1	844990			16747	5476	11086	11199	22537;22538;22539	22538					-0.07245764626543405
QSEEQSSYEN	10	Unmodified	_QSEEQSSYEN_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.35015869140625	3	400.826557	1199.45784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.59	1	19.685	19.185	20.185	0.095232								0	0	0	0.34018	1	1311	1311		0	0	1		+		16748	10908	11087	11200	22540	22540					-0.1339103935977164
QSELSHCLTF	10	Unmodified	_QSELSHCLTF_					0	0	0			REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.77099609375	2	582.771331	1163.52811	0.79598	0.00046387	-1.2625	-0.00073573	-0.46649	-0.00027186	582.7703853413133	92.478	0.55068	92.515	92.286	92.836	0.03653					50	19	3	0	0	0	0.32016	1	23073	23073		20.415	0	1	471990	+		16749	7899	11088	11201	22541	22541					-0.04711412505048429
QSEPGSIAL	9	Unmodified	_QSEPGSIAL_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.23480224609375	2	451.234907	900.455261	0.31721	0.00014314	-1.0835	-0.00048891	-0.76629	-0.00034578	451.23401655677765	52.938	0.99862	52.938	52.337	53.335	0					68	37	3	0	0	0	0.03918	1	11201	11201		45.7	1.2926	1	218300			16750	496	11089	11202	22542	22542					0.001052017638471625
QSEPGSIAL	9	Unmodified	_QSEPGSIAL_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.2348937988281	2	451.234907	900.455261	0.24338	0.00010982	-0.80268	-0.0003622	-0.5593	-0.00025237	451.2342093834546	52.895	0.87897	52.96	52.391	53.27	0.06543					68	36	3	0	0	0	0.14444	1	11074	11074		24.991	0.781	1	189000			16751	496	11089	11202	22543	22543					0.001052017638471625
QSFDKEWVA	9	Unmodified	_QSFDKEWVA_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2559204101562	2	555.266739	1108.51892	0.411	0.00022822	2.7353	0.0015188	3.1463	0.0017471	555.2684122525378	48.268	0.36024	48.268	48.123	48.483	0					26	11	3	0	0	0	0.064247	2	9790	9790;9799		40.239	14.84	1	184150			16752	2513	11090	11203	22544;22545	22544					-0.030994377990509747
QSFDKEWVA	9	Unmodified	_QSFDKEWVA_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2562866210938	2	555.266739	1108.51892	0.64336	0.00035724	1.9539	0.001085	2.5973	0.0014422	555.2677769831122	48.149	0.32768	48.229	48.087	48.414	0.080032					23	11	3	0	0	0	0.11547	2	9621	9621;9631		29.082	9.8246	1	173100			16753	2513	11090	11203	22546;22547	22546					-0.030994377990509747
QSFDVFIDIL	10	Unmodified	_QSFDVFIDIL_					0	0	0			REV__ENSG00000156502|ENST00000359655|SUPV3L1	REV__ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8141479492188	2	598.813522	1195.61249	0.037109	2.2222E-05	0.69541	0.00041642	0.73252	0.00043864	598.8138644474534	105.62	0.1839	105.62	105.49	105.68	0					38	20	2	0	0	0	0.28859	1	27190	27190		23.79	0	1	603950	+		16754	9757	11091	11204	22548	22548					0.022508615833885415
QSFDVFIDIL	10	Unmodified	_QSFDVFIDIL_					0	0	0			REV__ENSG00000156502|ENST00000359655|SUPV3L1	REV__ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8138427734375	2	598.813522	1195.61249	0.032192	1.9277E-05	0.58464	0.00035009	0.61683	0.00036936	598.8138075884166	105.72	0.36803	105.72	105.56	105.93	0					71	38	3	0	0	0	0.33926	1	27243	27243		18.373	0	1	529080	+		16755	9757	11091	11204	22549	22549					0.022508615833885415
QSFDVFIDIL	10	Unmodified	_QSFDVFIDIL_					0	0	0			REV__ENSG00000156502|ENST00000359655|SUPV3L1	REV__ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8153076171875	2	598.813522	1195.61249	0.26232	0.00015708	0.43612	0.00026116	0.69844	0.00041824	598.8137226077462	105.59	0.37812	105.62	105.48	105.86	0.029732					87	41	3	0	0	0	0.42184	1	26998	26998		9.544	0	1	653500	+		16756	9757	11091	11204	22550	22550					0.022508615833885415
QSGGVVRIAHV	11	Unmodified	_QSGGVVRIAHV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8268432617188	2	561.822547	1121.63054	0.32755	0.00018403	-2.3389	-0.0013141	-2.0114	-0.00113	561.8187834843982	47.929	1.811	47.929	47.583	49.394	0					246	62	6	0	0	0	0.38777	1	9774	9774		7.1017	0.89594	1	2184600			16757	3123	11092	11205	22551	22551					0.07459041348738538
QSGSVFQLL	9	Unmodified	_QSGSVFQLL_					0	0	0		ENSG00000161640|ENST00000447370|SIGLEC11	ENSG00000161640|ENST00000447370|SIGLEC11	ENSG00000161640|ENST00000447370|SIGLEC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2688293457031	2	489.766374	977.518196	0.28028	0.00013727	1.5061	0.00073763	1.7864	0.0008749	489.7670768912386	96.274	0.48642	96.274	96.028	96.515	0					38	22	2	0	0	0	0.28472	2	24374	24374;24396		8.7454	1.4562	1	198320			16758	3796	11093	11206	22552;22553	22552					0.028537675519032746
QSHFHPPIF	9	Unmodified	_QSHFHPPIF_					0	0	0			REV__ENST00000594305.1_1_19:49467651-49468248:+|nuORF	REV__ENST00000594305.1_1_19:49467651-49468248:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2799072265625	2	555.279983	1108.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.12	1	105.12	104.62	105.62	0								0	0	0	0.25692	1	27072	27072		7.9102	0	1		+		16759	12602	11094	11207	22554	22554					-0.004517041170629454
QSHLLARG	8	Unmodified	_QSHLLARG_					0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2514343261719	2	441.251226	880.487899	-0.052947	-2.3363E-05	0.51602	0.00022769	0.46307	0.00020433	441.25134888237005	21.377	0.49124	21.479	21.327	21.819	0.10178					102	49	3	0	0	0	0.32361	2	1759	1726;1759		32.786	2.4784	1	111780	+		16760	12304	11095	11208	22555;22556	22556					0.04287453677375197
QSHPGDFVL	9	Unmodified	_QSHPGDFVL_					0	0	0		nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2484130859375	2	500.248349	998.482145	0.21216	0.00010613	-0.092586	-4.6316E-05	0.11958	5.9819E-05	500.2481174017202	49.268	0.42129	49.268	49.059	49.48	0					22	14	2	0	0	0	0.23216	1	10107	10107		14.838	2.3067	1	110120			16761	4771	11096	11209	22557	22557					-0.01715689624938932
QSHPGDFVL	9	Unmodified	_QSHPGDFVL_					0	0	0		nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	500.248349	998.482145	0.1364	6.8233E-05	-0.1329	-6.6484E-05	0.0034965	1.7491E-06	500.248286018368	49.153	0.42136	49.229	49.007	49.428	0.076607	-0.019286	-1.9565E-05	NaN	14.838	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85808			16762	4771	11096	11209							-0.01715689624938932
QSHSAEIESQI	11	Unmodified	_QSHSAEIESQI_					0	0	0		ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1	ENSG00000052723|ENST00000060969|SIKE1	ENSG00000052723|ENST00000060969|SIKE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7943725585938	2	614.793849	1227.57314	-0.16758	-0.00010303	0.91725	0.00056392	0.74967	0.00046089	614.7944193017305	49.45	0.41053	49.527	49.359	49.77	0.076607					34	14	3	0	0	0	0.31037	1	10006	10006		15.739	2.866	1	191490			16763	592	11097	11210	22558	22558					-0.03153890438147755
QSIGERPAL	9	Unmodified	_QSIGERPAL_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.76959228515625	2	485.769448	969.524344	0.10526	5.1131E-05	0.055639	2.7028E-05	0.1609	7.8158E-05	485.7694487528956	37.931	0.78905	38.016	37.772	38.561	0.084476					54	28	3	0	0	0	0.2546	1	6582	6582		12.241	0	1	97883	+		16764	9266	11098	11211	22559	22559					0.03836285783427229
QSINALPEED	10	Unmodified	_QSINALPEED_					0	0	0			REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.775634765625	2	558.264393	1114.51423	0.75392	0.00042089	-1.6905	-0.00094375	-0.93659	-0.00052286	558.7647458939416	97.887	0.10955	97.928	97.848	97.957	0.040848					7	4	2	0	0	0	0.31803	1	24754	24754		3.2813	0	1	33311	+		16765	7822	11099	11212	22560	22560					-0.0384436673248274
QSKEPIIVKTI	11	Unmodified	_QSKEPIIVKTI_					0	0	0			REV__ENSG00000135678|ENST00000551568|CPM	REV__ENSG00000135678|ENST00000551568|CPM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.3829956054688	2	628.384645	1254.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.41	1	88.41	87.91	88.91	0								0	0	0	0.33503	1	22022	22022		2.4985	0.21571	1		+		16766	9214	11100	11213	22561	22561					0.1375507432555878
QSLCGPPSL	9	Unmodified	_QSLCGPPSL_					0	0	0			REV__ENST00000530675.5_3_11:102218091-102220814:+|nuORF	REV__ENST00000530675.5_3_11:102218091-102220814:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.22320556640625	2	451.226028	900.437503	0.17633	7.9564E-05	-4.3718	-0.0019727	-4.1955	-0.0018931	451.22282670901853	48.411	0.92516	48.491	48.134	49.059	0.080032					50	31	3	0	0	0	0.30005	1	9689	9689		6.7232	0.36906	1	88981	+		16767	12354	11101	11214	22562	22562					-0.016698367626418076
QSLKTSLT	8	Unmodified	_QSLKTSLT_					0	0	0		nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	nc|ENSG00000166348|Q70EL1-9|USP54	nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.25274658203125	2	439.2531	876.491647	0.37236	0.00016356	-1.1879	-0.00052177	-0.81551	-0.00035821	439.2525069181312	85.846	0.62892	85.871	85.599	86.228	0.025177					48	22	3	0	0	0	0.53817	1	21083	21083		2.5775	0	1	371300			16768	4153	11102	11215	22563	22563					0.04846078660580133
QSLKTSLT	8	Unmodified	_QSLKTSLT_					0	0	0		nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54;nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54	nc|ENSG00000166348|Q70EL1-9|USP54	nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	439.2531	876.491647	0.49825	0.00021886	-1.3914	-0.00061117	-0.89313	-0.00039231	439.25241080435364	85.914	0.70022	85.914	85.631	86.331	0	0.021388	-9.1288E-05	NaN	2.5775	55	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309020			16769	4153	11102	11215							0.04846078660580133
QSLQKRWLRR	10	Unmodified	_QSLQKRWLRR_					0	0	0			REV__ENST00000522362.6_1_8:26366474-26366684:-|nuORF	REV__ENST00000522362.6_1_8:26366474-26366684:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.6080627441406	3	457.609105	1369.80549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.974	1	93.011	92.511	93.511	0.037369								0	0	0	0.33952	1	23248	23248		0.77653	0.27058	1		+		16770	12302	11103	11216	22564	22564					0.1353746121376389
QSLVHFIWDE	10	Unmodified	_QSLVHFIWDE_					0	0	0			REV__ENSG00000168447|ENST00000343070|SCNN1B	REV__ENSG00000168447|ENST00000343070|SCNN1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.7705078125	2	637.31422	1272.61389	0.073088	4.658E-05	-2.9455	-0.0018772	-2.8724	-0.0018306	637.3122192694262	50.984	0.20565	50.984	50.886	51.092	0					10	6	2	0	0	0	0.31761	1	10595	10595		5.2969	2.0156	1	53434	+		16771	10152	11104	11217	22565	22565					-0.011515043278677695
QSLVHFIWDE	10	Unmodified	_QSLVHFIWDE_					0	0	0			REV__ENSG00000168447|ENST00000343070|SCNN1B	REV__ENSG00000168447|ENST00000343070|SCNN1B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	637.31422	1272.61389	0.23196	0.00014783	-3.8181	-0.0024334	-3.5862	-0.0022855	637.8135552818103	50.907	0.2773	50.977	50.854	51.131	0.069874	-0.0035629	-0.00086316	NaN	5.2969	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44317	+		16772	10152	11104	11217							-0.011515043278677695
QSLWDRETI	9	Unmodified	_QSLWDRETI_					0	0	0			REV__CON__Q1RMK2	REV__CON__Q1RMK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7921142578125	2	574.290745	1146.56694	-0.05733	-3.2924E-05	0.73774	0.00042368	0.68041	0.00039076	574.7925307123029	39.896	1.278	39.985	39.788	41.066	0.088562					67	49	2	0	0	0	0.24929	1	7192	7192		9.3831	2.66	1	39888	+	+	16773	7843	11105	11218	22566	22566					-0.00048363879000135057
QSNRYTVQL	9	Unmodified	_QSNRYTVQL_					0	0	0			REV__ENST00000407170.6_1_19:42071403-42085771:+|nuORF	REV__ENST00000407170.6_1_19:42071403-42085771:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.789306640625	2	554.790912	1107.56727	0.55738	0.00030923	-1.8562	-0.0010298	-1.2988	-0.00072057	554.7894365779542	55.845	0.51023	55.845	55.497	56.007	0					24	17	2	0	0	0	0.12214	1	12101	12101		27.629	0	1	128260	+		16774	7952	11106	11219	22567	22567					0.01779055840847832
QSNRYTVQL	9	Unmodified	_QSNRYTVQL_					0	0	0			REV__ENST00000407170.6_1_19:42071403-42085771:+|nuORF	REV__ENST00000407170.6_1_19:42071403-42085771:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	554.790912	1107.56727	0.55738	0.00030923	-1.8562	-0.0010298	-1.2988	-0.00072057	554.7894365779542	55.845	0.51023	55.845	55.497	56.007	0	-0.02628	0.00029492	NaN	27.629	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128260	+		16775	7952	11106	11219							0.01779055840847832
QSPDPAGPLL	10	Unmodified	_QSPDPAGPLL_					0	0	0			REV__nc|ENSG00000187634|Q96NU1-1|SAMD11	REV__nc|ENSG00000187634|Q96NU1-1|SAMD11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.76300048828125	2	497.763832	993.513111	-0.50358	-0.00025067	-0.91034	-0.00045313	-1.4139	-0.0007038	497.76341164977515	41.684	0.47866	41.684	41.459	41.938	0					54	17	4	0	0	0	0.43214	1	7833	7833		8.1555	0	1	297130	+		16776	10741	11107	11220	22568	22568					0.01609463689283075
QSPLGVLC	8	Unmodified	_QSPLGVLC_					0	0	0			REV__ENST00000579583.5_3_18:72163621-72167234:+|nuORF	REV__ENST00000579583.5_3_18:72163621-72167234:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.71820068359375	2	408.717839	815.421125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.551	1	81.573	81.073	82.073	0.021866								0	0	0	0.38822	1	19773	19773		2.8892	0	1		+		16777	12548	11108	11221	22569	22569					0.00603082071256722
QSPNACRIH	9	Unmodified	_QSPNACRIH_					0	0	0		ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2503662109375	2	513.2509	1024.48725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.527	1	85.552	85.052	86.052	0.025169								0	0	0	0.21325	1	20987	20987		16.149	2.2431	1				16778	1002	11109	11222	22570	22570					-0.024017090340066716
QSPNTAITQM	10	Unmodified	_QSPNTAITQM_					0	0	0		ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7636108398438	2	545.763506	1089.51246	-0.21919	-0.00011963	-0.030212	-1.6489E-05	-0.2494	-0.00013611	545.7633871325933	23.784	0.65879	23.784	23.499	24.158	0					108	60	2	0	0	0	0.46827	1	2568	2568		1.3295	0.5359	1	28135			16779	5460	11110	11223	22571	22571					-0.028716990221028027
QSPTHRGF	8	Unmodified	_QSPTHRGF_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.2196350097656	2	465.233033	928.451513	-0.1244	-5.7877E-05	-0.52572	-0.00024458	-0.65013	-0.00030246	465.2327346024608	21.312	1.3483	21.414	21.262	22.61	0.10178					295	132	4	0	0	0	0.3528	1	1701	1701		18.135	2.2878	1	883870			16780	4244	11111	11224	22572	22572					-0.01557423219321663
QSQDIFAGR	9	Unmodified	_QSQDIFAGR_					0	0	0			REV__ENSG00000167325|ENST00000300738|RRM1	REV__ENSG00000167325|ENST00000300738|RRM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2565002441406	2	511.256705	1020.49886	-0.10031	-5.1284E-05	-0.082097	-4.1972E-05	-0.18241	-9.3257E-05	511.2566715954858	32.898	0.52525	32.898	32.675	33.2	0					31	21	2	0	0	0	0.25281	1	5175	5175		6.7232	0.99131	1	69777	+		16781	10115	11112	11225	22573	22573					-0.010571887390028678
QSQDIFAGR	9	Unmodified	_QSQDIFAGR_					0	0	0			REV__ENSG00000167325|ENST00000300738|RRM1	REV__ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2568359375	2	511.256705	1020.49886	-0.045557	-2.3291E-05	0.039891	2.0395E-05	-0.0056657	-2.8966E-06	511.256636172221	32.837	0.43285	32.911	32.713	33.145	0.073997					40	18	4	0	0	0	0.30005	2	5004	5004;5053		6.7232	0.99131	1	58562	+		16782	10115	11112	11225	22574;22575	22574					-0.010571887390028678
QSQDIFAGR	9	Unmodified	_QSQDIFAGR_					0	0	0			REV__ENSG00000167325|ENST00000300738|RRM1	REV__ENSG00000167325|ENST00000300738|RRM1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	511.256705	1020.49886	-0.045557	-2.3291E-05	0.039891	2.0395E-05	-0.0056657	-2.8966E-06	511.256636172221	32.837	0.43285	32.911	32.713	33.145	0.073997	0.0063211	4.184E-05	NaN	6.7232	40	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58562	+		16783	10115	11112	11225							-0.010571887390028678
QSRQTFSISSM	11	Unmodified	_QSRQTFSISSM_					0	0	0		ENSG00000172232|ENST00000233997|AZU1	ENSG00000172232|ENST00000233997|AZU1	ENSG00000172232|ENST00000233997|AZU1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.5399169921875	3	424.539805	1270.59759	0.23135	9.8216E-05	-0.01386	-5.8843E-06	0.21749	9.2331E-05	424.53967866229476	34.803	0.94202	34.803	34.568	35.51	0					66	34	3	0	0	0	0.38555	1	5739	5739		3.8459	0	1	156290			16784	4484	11113	11226	22576	22576					-0.026889535562759193
QSSATLKMRL	10	Unmodified	_QSSATLKMRL_					0	0	0			REV__ENSG00000283428|ENST00000638102|CCDC195	REV__ENSG00000283428|ENST00000638102|CCDC195	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8165283203125	2	567.818615	1133.62268	0.054095	3.0716E-05	0.19789	0.00011237	0.25199	0.00014308	567.818587599469	46.249	0.60426	46.335	45.954	46.558	0.085621					46	24	3	0	0	0	0.43503	1	8991	8991		7.609	0.31972	1	504190	+		16785	11154	11114	11227	22577	22577					0.06121146036957725
QSSHSLPRL	9	Unmodified	_QSSHSLPRL_					0	0	0			REV__ENST00000468403.1_1_1:153750510-153750957:+|nuORF	REV__ENST00000468403.1_1_1:153750510-153750957:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7799072265625	2	512.780348	1023.54614	0.10783	5.5292E-05	-0.35461	-0.00018184	-0.24678	-0.00012654	512.7801696746005	20.685	0.13973	20.784	20.728	20.868	0.099499					28	15	2	0	0	0	0.33849	1	1561	1561		1.6526	0.85899	1	13923	+		16786	12016	11115	11228	22578	22578					0.03531090531987502
QSSHSLPRL	9	Unmodified	_QSSHSLPRL_					0	0	0			REV__ENST00000468403.1_1_1:153750510-153750957:+|nuORF	REV__ENST00000468403.1_1_1:153750510-153750957:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.780348	1023.54614	-0.27703	-0.00014206	0.69603	0.00035691	0.419	0.00021485	512.7806373159564	20.853	0.087109	20.853	20.823	20.91	0	0.03457	0.00079037	NaN	1.6526	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14885	+		16787	12016	11115	11228							0.03531090531987502
QSSKNSYSF	9	Unmodified	_QSSKNSYSF_					0	0	0		nc|ENSG00000164197|Q86T96-2|RNF180;ENSG00000164197|ENST00000389100|RNF180	nc|ENSG00000164197|Q86T96-2|RNF180	nc|ENSG00000164197|Q86T96-2|RNF180	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.281982421875	2	524.240721	1046.46689	-0.62125	-0.00032568	-0.12975	-6.802E-05	-0.751	-0.0003937	524.2404440160815	41.76	0.39302	41.76	41.575	41.968	0					30	14	3	0	0	0	0.22912	1	7816	7816		18.146	1.0335	1	136020			16788	3990	11116	11229	22579	22579					-0.054486012128108996
QSSKNSYSF	9	Unmodified	_QSSKNSYSF_					0	0	0		nc|ENSG00000164197|Q86T96-2|RNF180;ENSG00000164197|ENST00000389100|RNF180	nc|ENSG00000164197|Q86T96-2|RNF180	nc|ENSG00000164197|Q86T96-2|RNF180	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2822265625	2	524.240721	1046.46689	-0.50599	-0.00026526	0.42724	0.00022397	-0.078753	-4.1286E-05	524.2407361588982	41.681	0.39731	41.771	41.596	41.994	0.089764					30	15	3	0	0	0	0.22912	1	7652	7652		18.146	4.2403	1	132900			16789	3990	11116	11229	22580	22580					-0.054486012128108996
QSSTMNGIQDL	11	Unmodified	_QSSTMNGIQDL_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2763671875	2	597.276977	1192.5394	0.39224	0.00023428	-0.5356	-0.0003199	-0.14336	-8.5627E-05	597.2766921329413	83.261	0.34616	83.261	83.079	83.425	0					18	11	2	0	0	0	0.36721	1	20475	20475		10.315	0.16466	1	78682	+		16790	9239	11117	11230	22581	22581					-0.04916635201539066
QSVHVLQLI	9	Unmodified	_QSVHVLQLI_					0	0	0			REV__nc|ENSG00000087470|O00429-4|DNM1L	REV__nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.8104858398438	2	518.811116	1035.60768	-0.0056604	-2.9367E-06	-0.88657	-0.00045996	-0.89223	-0.0004629	518.8105745139435	90.559	0.73971	90.593	90.143	90.883	0.034065					75	30	3	0	0	0	0.29576	1	22524	22524		7.2892	2.96	1	2215200	+		16791	8282	11118	11231	22582	22582					0.09130022231283874
QSVHVLQLI	9	Unmodified	_QSVHVLQLI_					0	0	0			REV__nc|ENSG00000087470|O00429-4|DNM1L	REV__nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	518.811116	1035.60768	0.31799	0.00016498	-1.3352	-0.00069272	-1.0172	-0.00052774	518.8103867147498	90.59	0.74198	90.59	90.231	90.973	0	-0.0012961	-0.00025848	NaN	7.2892	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1015800	+		16792	8282	11118	11231							0.09130022231283874
QSVHVLQLI	9	Unmodified	_QSVHVLQLI_					0	0	0			REV__nc|ENSG00000087470|O00429-4|DNM1L	REV__nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	518.811116	1035.60768	-0.0056604	-2.9367E-06	-0.88657	-0.00045996	-0.89223	-0.0004629	518.8105745139435	90.559	0.73971	90.593	90.143	90.883	0.034065	0.0012961	0.00020703	NaN	7.2892	75	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2215200	+		16793	8282	11118	11231							0.09130022231283874
QTDPSQWK	8	Unmodified	_QTDPSQWK_					0	0	0			REV__ENSG00000222028|ENST00000408907|PSMB11	REV__ENSG00000222028|ENST00000408907|PSMB11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.76470947265625	2	495.237981	988.461409	0.021654	1.0724E-05	1.6315	0.00080798	1.6532	0.00081871	495.23814241706356	30.012	0.36846	30.012	29.896	30.265	0					23	15	2	0	0	0	0.3576	1	4299	4299		2.0598	1.2661	1	11598	+		16794	11023	11119	11232	22583	22583					-0.03328280004609496
QTEDQFSTLF	10	Unmodified	_QTEDQFSTLF_					0	0	0			REV__ENST00000390382.3_1_7:142157380-142157551:-|nuORF	REV__ENST00000390382.3_1_7:142157380-142157551:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.85601806640625	3	405.855787	1214.54553	0.17869	7.2523E-05	0.79142	0.0003212	0.97011	0.00039372	405.8559891038513	55.601	0.71767	55.666	55.374	56.092	0.065128					59	25	3	0	0	0	0.41688	1	11888	11888		5.7834	0.38072	1	400270	+		16795	11688	11120	11233	22584	22584					-0.05315793698378002
QTEFILRWR	9	Unmodified	_QTEFILRWR_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2176818847656	3	416.899773	1247.67749	-0.11799	-4.9191E-05	0.16035	6.6848E-05	0.042355	1.7658E-05	417.23309230274776	34.277	0.19546	34.353	34.194	34.39	0.076244					10	6	2	0	0	0	0.24718	1	5417	5417		12.175	2.0242	1	10488	+		16796	8907	11121	11234	22585	22585					0.0635590089989364
QTELILLL	8	Unmodified	_QTELILLL_					0	0	0		nc|ENSG00000204296|Q5SRN2|TSBP1	nc|ENSG00000204296|Q5SRN2|TSBP1	nc|ENSG00000204296|Q5SRN2|TSBP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.79608154296875	2	471.797143	941.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.93	1	101.93	101.43	102.43	0								0	0	0	0.38822	1	26133	26133		6.3541	0	1				16797	7591	11122	11235	22586	22586					0.10660699251207006
QTFENQVNR	9	Unmodified	_QTFENQVNR_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2860107421875	2	568.278169	1134.54179	-0.19587	-0.00011131	-1.6935	-0.00096241	-1.8894	-0.0010737	568.277348017596	28.013	0.21774	28.013	27.923	28.14	0					23	11	4	0	0	0	0.27332	2	3726	3720;3726		10.074	6.1295	1	35284			16798	4832	11123	11236	22587;22588	22588					-0.020104186815842695
QTFENQVNR	9	Unmodified	_QTFENQVNR_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.286376953125	2	568.278169	1134.54179	-0.16253	-9.2365E-05	-1.4986	-0.0008516	-1.6611	-0.00094397	568.2772105502555	27.933	0.17015	28.015	27.937	28.107	0.082132					17	9	2	0	0	0	0.22083	2	3556	3556;3572		16.149	8.8599	1	30001			16799	4832	11123	11236	22589;22590	22589					-0.020104186815842695
QTGELLTGR	9	Unmodified	_QTGELLTGR_					0	0	0		ENST00000494120.1_1_1:38156027-38157161:-|nuORF	ENST00000494120.1_1_1:38156027-38157161:-|nuORF	ENST00000494120.1_1_1:38156027-38157161:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7671203613281	2	487.766906	973.519259	0.0099961	4.8758E-06	1.3787	0.00067247	1.3887	0.00067734	487.7669691890534	35.73	0.32465	35.809	35.596	35.92	0.078827					19	11	2	0	0	0	0.32614	1	5883	5883		3.2813	0	1	33096			16800	6824	11124	11237	22591	22591					0.03143981920800343
QTHRFNRHV	9	Unmodified	_QTHRFNRHV_					0	0	0			REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF	REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8134155273438	2	597.815587	1193.61662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.963	1	41.052	40.552	41.552	0.089645								0	0	0	0.2927	1	7455	7455		0.52476	0	1		+		16801	11392	11125	11238	22592	22592					0.027558086402905246
QTIPGHLAE	9	Unmodified	_QTIPGHLAE_					0	0	0			REV__ENST00000392185.7_2_6:158349714-158356999:+|nuORF	REV__ENST00000392185.7_2_6:158349714-158356999:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2559509277344	2	483.256174	964.497795	-0.018419	-8.901E-06	0.23819	0.00011511	0.21977	0.00010621	483.25638841050704	36.739	0.78191	36.821	36.536	37.318	0.081715					46	30	2	0	0	0	0.30757	1	6210	6210		5.7319	0.43497	1	38146	+		16802	11690	11126	11239	22593	22593					0.01412596892100737
QTIQGILER	9	Unmodified	_QTIQGILER_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.304443359375	2	529.303655	1056.59276	0.18982	0.00010047	0.87716	0.00046428	1.067	0.00056475	529.3042068365794	48.643	0.40542	48.643	48.453	48.858	0					21	13	2	0	0	0	0.1019	1	9884	9884		32.037	3.543	1	180890			16803	559	11127	11240	22594	22594					0.06672530363289297
QTIQGILER	9	Unmodified	_QTIQGILER_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.8050537109375	2	529.303655	1056.59276	0.25399	0.00013444	0.56477	0.00029893	0.81876	0.00043337	529.3039295746123	48.533	0.37077	48.613	48.442	48.813	0.080029					20	11	2	0	0	0	0.1019	3	9728	9728;9741;9784		32.037	8.2477	1	151910			16804	559	11127	11240	22595;22596;22597	22595					0.06672530363289297
QTKAAQALA	9	Unmodified	_QTKAAQALA_					0	0	0		ENST00000471780.1_1_15:91493362-91496943:+|nuORF;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A	ENST00000471780.1_1_15:91493362-91496943:+|nuORF	ENST00000471780.1_1_15:91493362-91496943:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.2574157714844	2	451.258717	900.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.903	1	32.977	32.477	33.477	0.074322								0	0	0	0.28631	1	5039	5039		1.8442	0	1				16805	3022	11128	11241	22598	22598					0.048649007546828216
QTLLDASDL	9	Unmodified	_QTLLDASDL_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.25421142578125	2	488.253297	974.492041	0.52098	0.00025437	-0.35881	-0.00017519	0.16216	7.9177E-05	488.25311193176344	65.407	0.74231	65.407	65.137	65.879	0					60	26	3	0	0	0	0.30757	1	14947	14947		5.7319	0.83484	1	386310			16806	578	11129	11242	22599	22599					0.0037745358977190335
QTRVNKAP	8	Unmodified	_QTRVNKAP_					0	0	0		nc|ENSG00000183963|P53814-2|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000493335.5_1_22:31489433-31491914:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF	nc|ENSG00000183963|P53814-2|SMTN	nc|ENSG00000183963|P53814-2|SMTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.26458740234375	2	457.264333	912.514114	0.30296	0.00013853	-0.13859	-6.3371E-05	0.16437	7.5162E-05	457.26408613631486	90.018	0.30724	90.018	89.811	90.118	0					16	11	2	0	0	0	0.53494	1	22511	22511		4.756	0	1	117010			16807	4953	11130	11243	22600	22600					0.054357228488470355
QTRVNKAP	8	Unmodified	_QTRVNKAP_					0	0	0		nc|ENSG00000183963|P53814-2|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000493335.5_1_22:31489433-31491914:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF	nc|ENSG00000183963|P53814-2|SMTN	nc|ENSG00000183963|P53814-2|SMTN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	457.264333	912.514114	0.010589	4.8418E-06	0.2766	0.00012648	0.28719	0.00013132	457.2644325430741	89.945	0.23955	89.979	89.796	90.035	0.034065	-0.019407	0.00021603	NaN	4.756	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281340			16808	4953	11130	11243							0.054357228488470355
QTSGLDWCVE	10	Unmodified	_QTSGLDWCVE_					0	0	0			REV__ENST00000221922.10_2_19:47761595-47761831:+|nuORF	REV__ENST00000221922.10_2_19:47761595-47761831:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2467651367188	2	569.247689	1136.48082	-0.043761	-2.4911E-05	-0.3232	-0.00018398	-0.36696	-0.00020889	569.24742877342	33.237	1.0188	33.311	32.862	33.881	0.074322					52	41	2	0	0	0	0.46208	1	5192	5192		2.4985	1.3051	1	19139	+		16809	11182	11131	11244	22601	22601					-0.08195691776040803
QTSHHSIWLH	10	Unmodified	_QTSHHSIWLH_					0	0	0			REV__ENST00000328257.12_1_11:73965393-73965618:+|nuORF	REV__ENST00000328257.12_1_11:73965393-73965618:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.87548828125	3	415.875628	1244.60505	-0.25382	-0.00010556	-0.39974	-0.00016624	-0.65356	-0.0002718	415.8754434947641	31.071	1.4739	31.144	30.578	32.052	0.073782					100	75	2	0	0	0	0.47119	1	4598	4598		0.77653	0.078866	1	50368	+		16810	11413	11132	11245	22602	22602					-0.007464331736855456
QTSPELEHRME	11	Unmodified	_QTSPELEHRME_					0	0	0		ENST00000561302.5_1_15:76430142-76521275:+|nuORF	ENST00000561302.5_1_15:76430142-76521275:+|nuORF	ENST00000561302.5_1_15:76430142-76521275:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8701477050781	3	452.878598	1355.61396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.628	1	89.628	89.128	90.128	0								0	0	0	0.33867	1	22388	22388		1.2148	0.51716	1				16811	7153	11133	11246	22603	22603					-0.049618723901858175
QTTYDQHIS	9	Unmodified	_QTTYDQHIS_					0	0	0			REV__nc|ENSG00000186431|P24071-7|FCAR	REV__nc|ENSG00000186431|P24071-7|FCAR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7515258789062	2	546.751453	1091.48835	-0.11833	-6.47E-05	0.53009	0.00028983	0.41176	0.00022513	546.7517595203657	27.877	0.66543	27.877	27.684	28.35	0					73	37	3	0	0	0	0.25921	1	3682	3682		1.4819	0.28856	1	62631	+		16812	10704	11134	11247	22604	22604					-0.05373216184102603
QTWMRRHR	8	Unmodified	_QTWMRRHR_					0	0	0		nc|ENSG00000197275|Q9Y620-2|RAD54B	nc|ENSG00000197275|Q9Y620-2|RAD54B	nc|ENSG00000197275|Q9Y620-2|RAD54B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.80712890625	2	585.806708	1169.59886	0.42518	0.00024908	0.9366	0.00054867	1.3618	0.00079774	585.8071171699731	34.126	0.5741	34.203	33.993	34.567	0.076244					45	22	3	0	0	0	0.54097	1	5472	5472		0.69038	0.088878	1	79784			16813	7584	11135	11248	22605	22605					0.020847701138109187
QTYRERHML	9	Unmodified	_QTYRERHML_					0	0	0			REV__TTC19|p.A326T|1|0.12|ENSG00000011295|chr17:16026684-16026684|G/A|missense_variant	REV__TTC19|p.A326T|1|0.12|ENSG00000011295|chr17:16026684-16026684|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.5680236816406	3	411.876751	1232.60842	0.38951	0.00016043	-0.97138	-0.00040009	-0.58188	-0.00023966	411.8764736618576	49.886	0.56063	49.886	49.733	50.294	0					29	19	2	0	0	0	0.25346	1	10255	10255		7.1017	7.1017	1	102570	+		16814	7977	11136	11249	22606	22606					0.0014249360867779615
QVADVVVSR	9	Unmodified	_QVADVVVSR_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.77703857421875	2	486.777274	971.539994	-0.10085	-4.9091E-05	0.49002	0.00023853	0.38917	0.00018944	486.7776516760197	35.231	0.44529	35.231	34.944	35.389	0					21	15	3	0	0	0	0.29718	1	5865	5865		7.1017	2.2047	1	30641			16815	4351	11137	11250	22607	22607					0.05308572300475589
QVADVVVSR	9	Unmodified	_QVADVVVSR_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.77740478515625	2	486.777274	971.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.123	1	35.202	34.702	35.702	0.078827								0	0	0	0.26083	1	5704	5704		7.1017	2.2047	1				16816	4351	11137	11250	22608	22608					0.05308572300475589
QVAEGFISR	9	Unmodified	_QVAEGFISR_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.74517822265625	2	503.769448	1005.52434	-0.2609	-0.00013143	0.44059	0.00022196	0.17969	9.0521E-05	503.7697030354785	40.268	0.41036	40.268	40.151	40.562	0					18	14	2	0	0	0	0.25346	1	7401	7401		7.1017	2.2047	1	45467			16817	544	11138	11251	22609	22609					0.021802857834131828
QVAEGFISR	9	Unmodified	_QVAEGFISR_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.74578857421875	2	503.769448	1005.52434	-0.10395	-5.2367E-05	0.88112	0.00044388	0.77717	0.00039152	503.769768395761	40.178	0.29426	40.267	40.163	40.457	0.088562					13	10	2	0	0	0	0.25787	1	7242	7242		2.9952	0.93549	1	40832			16818	544	11138	11251	22610	22610					0.021802857834131828
QVAEKDIQG	9	Unmodified	_QVAEKDIQG_					0	0	0			REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2588195800781	2	494.258914	986.503274	-0.011214	-5.5425E-06	-0.2043	-0.00010098	-0.21551	-0.00010652	494.2588013736036	29.189	0.78696	29.189	28.971	29.758	0					135	45	4	0	0	0	0.0072241	1	4055	4055		75.761	9.3041	1	836010	+		16819	8117	11139	11252	22611	22611					0.009482756839020112
QVANSAFVER	10	Unmodified	_QVANSAFVER_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7905883789062	2	560.790912	1119.56727	0.073498	4.1217E-05	-0.2557	-0.00014339	-0.1822	-0.00010218	560.7906628917004	34.297	0.64332	34.297	34.058	34.701	0					69	24	4	0	0	0	0.29785	1	5602	5602		24.882	11.267	1	418610			16820	1108;897	11140	11253	22612	22612					0.012270558408545185
QVANSAFVER	10	Unmodified	_QVANSAFVER_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.790771484375	2	560.790912	1119.56727	0.17072	9.574E-05	-0.35696	-0.00020018	-0.18624	-0.00010444	560.7906204273919	34.239	0.45439	34.315	34.088	34.542	0.076244					53	17	4	0	0	0	0.40338	1	5465	5465		11.518	6.221	1	372250			16821	1108;897	11140	11253	22613	22613					0.012270558408545185
QVAQGDELR	9	Unmodified	_QVAQGDELR_					0	0	0			REV__nc|ENSG00000166478|P52747-2|ZNF143	REV__nc|ENSG00000166478|P52747-2|ZNF143	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2799987792969	2	508.261988	1014.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.966	1	33.041	32.541	33.541	0.074322								0	0	0	0.27613	1	5058	5058		3.9444	0.66309	1		+		16822	10081	11141	11254	22614	22614					0.0027479391542328813
QVAVDEPDL	9	Unmodified	_QVAVDEPDL_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7583312988281	2	493.245472	984.476391	0.41187	0.00020315	0.1922	9.48E-05	0.60407	0.00029795	493.2454405194422	57.144	0.54679	57.144	56.916	57.463	0					39	19	3	0	0	0	0.24767	1	12449	12449		13.042	2.9685	1	354220	+		16823	9682	11142	11255	22615	22615					-0.016468329272925075
QVDWPWQVTL	10	Unmodified	_QVDWPWQVTL_					0	0	0		ENST00000481697.5_1_7:102389464-102389629:+|nuORF	ENST00000481697.5_1_7:102389464-102389629:+|nuORF	ENST00000481697.5_1_7:102389464-102389629:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.7985229492188	2	636.324588	1270.63462	0.56425	0.00035905	0.15261	9.711E-05	0.71686	0.00045616	636.3244900799705	70.83	0.60863	70.888	70.575	71.183	0.058578					35	23	2	0	0	0	0.31496	1	16518	16518		13.906	0	1	98931			16824	6754	11143	11256	22616	22616					0.010130860517847395
QVEEYEPEL	9	Unmodified	_QVEEYEPEL_					0	0	0		ENST00000528352.1_1_1:67241210-67243134:+|nuORF;ENSG00000152760|ENST00000282670|DYNLT5	ENST00000528352.1_1_1:67241210-67243134:+|nuORF	ENST00000528352.1_1_1:67241210-67243134:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2615966796875	2	568.261319	1134.50808	0.11998	6.8178E-05	0.24318	0.00013819	0.36315	0.00020637	568.2617027691676	51.136	1.8092	51.136	50.234	52.043	0					160	62	4	0	0	0	0.24021	1	10833	10833		13.906	0	1	537700			16825	3505	11144	11257	22617	22617					-0.053788849639886394
QVERLNIRIK	10	Unmodified	_QVERLNIRIK_					0	0	0			REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.892578125	2	634.893503	1267.77245	0.22866	0.00014518	-0.47891	-0.00030406	-0.25025	-0.00015888	634.8928431966361	101.42	0.5962	101.42	101.12	101.72	0					84	36	3	0	0	0	0.47199	1	25922	25922		0.35063	0	1	264080	+		16826	7761	11145	11258	22618	22618					0.1492783437106482
QVFGMYLV	8	Unmodified	_QVFGMYLV_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;ENST00000436788.2_1_6:119234457-119238897:-|nuORF	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.74761962890625	2	478.749139	955.483725	-0.75459	-0.00036126	-3.8372	-0.001837	-4.5918	-0.0021983	478.74721668673027	42.207	0.27692	42.207	42.057	42.333	0					13	9	2	0	0	0	0.51887	1	7990	7990		10.183	1.5901	1	37682			16827	1734	11146	11259	22619	22619					0.004202281394327656
QVFGMYLV	8	Unmodified	_QVFGMYLV_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;ENST00000436788.2_1_6:119234457-119238897:-|nuORF	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	478.749139	955.483725	-0.58071	-0.00027801	-4.5261	-0.0021669	-5.1068	-0.0024449	478.7469145185245	42.115	0.24815	42.205	42.094	42.342	0.089764	-0.00089344	-0.00019717	NaN	10.183	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35731			16828	1734	11146	11259							0.004202281394327656
QVGPEEKIAL	10	Unmodified	_QVGPEEKIAL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.305908203125	2	542.305864	1082.59717	0.25839	0.00014013	-0.041745	-2.2638E-05	0.21665	0.00011749	542.3057671041854	48.398	0.64193	48.398	48.159	48.801	0					47	21	3	0	0	0	2.7127E-07	2	9825	9825;9871		147.24	84.668	1	602410			16829	1117	11147	11260	22620;22621	22620					0.05917994786182135
QVGPEEKIAL	10	Unmodified	_QVGPEEKIAL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.3060302734375	2	542.305864	1082.59717	0.42519	0.00023058	-0.17018	-9.2291E-05	0.25501	0.00013829	542.3057060816602	48.317	0.53908	48.397	48.155	48.694	0.080029					46	17	4	0	0	0	0.37637	1	9713	9713		14.405	5.0223	1	509210			16830	1117	11147	11260	22622	22622					0.05917994786182135
QVHSAKLP	8	Unmodified	_QVHSAKLP_					0	0	0		ENST00000460614.1_1_9:139943111-139943842:-|nuORF;nc|ENSG00000054179|Q9Y5L3-3|ENTPD2;nc|ENSG00000054179|Q9Y5L3-2|ENTPD2;ENSG00000054179|ENST00000355097|ENTPD2	ENST00000460614.1_1_9:139943111-139943842:-|nuORF	ENST00000460614.1_1_9:139943111-139943842:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7604675292969	2	440.255977	878.497401	0.21044	9.2647E-05	3.3235	0.0014632	3.534	0.0015558	440.25553768901943	73.55	0.24397	73.55	73.446	73.69	0					15	8	3	0	0	0	0.53858	1	17517	17517		2.3027	0	1	45235			16831	599	11148	11261	22623	22623					0.05329221962904285
QVHTTTWLL	9	Unmodified	_QVHTTTWLL_					0	0	0			REV__ENST00000373812.7_2_1:29070205-29070289:+|nuORF	REV__ENST00000373812.7_2_1:29070205-29070289:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8018188476562	2	549.800749	1097.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.333	1	89.365	88.865	89.865	0.032257								0	0	0	0.27427	1	22141	22141		4.3292	0	1		+		16832	11619	11149	11262	22624	22624					0.042054318516193234
QVHTYFAC	8	Unmodified	_QVHTYFAC_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.71875	2	484.71837	967.422187	-0.059614	-2.8896E-05	0.39122	0.00018963	0.33161	0.00016074	484.71833808837636	89.366	0.97137	89.399	88.823	89.794	0.032257					42	37	2	0	0	0	0.54081	1	22158	22158		0.79363	0	1	72089	+		16833	10293	11150	11263	22625	22625					-0.06282703559838865
QVIEEIEEM	9	Oxidation (M)	_QVIEEIEEM(Oxidation (M))_		QVIEEIEEM(1)		QVIEEIEEM(40)	0	0	1		ENST00000534022.1_1_11:125330178-125333397:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2;ENSG00000149557|ENST00000278919|FEZ1	ENST00000534022.1_1_11:125330178-125333397:-|nuORF	ENST00000534022.1_1_11:125330178-125333397:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2625732421875	2	568.263004	1134.51146	0.22896	0.00013011	-1.1424	-0.00064921	-0.91348	-0.0005191	568.2624085160085	52.238	0.35397	52.305	52.058	52.412	0.067169					23	14	2	0	0	0	0.064247	1	10845	10845		40.239	12.61	1	145950			16834	3410	11151	11264	22626	22626		219			-0.05041958181664086
QVIGVVLQK	9	Unmodified	_QVIGVVLQK_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.316162109375	2	492.316035	982.617516	0.2904	0.00014297	0.10889	5.3608E-05	0.39929	0.00019658	492.31609240354754	46.818	0.28521	46.818	46.713	46.998	0					16	11	2	0	0	0	0.30005	1	9355	9355		6.7232	2.3939	1	58172			16835	5964	11152	11265	22627	22627					0.12551210236642873
QVIIFVKSVQR	11	Unmodified	_QVIIFVKSVQR_					0	0	0		ENST00000587730.5_1_19:14520346-14520718:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENSG00000123136|ENST00000242776|DDX39A	ENST00000587730.5_1_19:14520346-14520718:-|nuORF	ENST00000587730.5_1_19:14520346-14520718:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.2755126953125	3	439.606478	1315.79761	0.10592	4.6562E-05	0.066353	2.9169E-05	0.17227	7.5731E-05	439.60650601136086	46.685	0.2959	46.769	46.711	47.007	0.083096					17	12	2	0	0	0	0.41047	1	9183	9183		1.9275	0.91393	1	60975			16836	2207	11153	11266	22628	22628					0.15233889173646276
QVITKEYEL	9	Unmodified	_QVITKEYEL_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8057250976562	2	561.805697	1121.59684	0.1065	5.9832E-05	-0.15981	-8.9783E-05	-0.053313	-2.9951E-05	561.8055268935805	46.297	0.45725	46.297	46.039	46.496	0					30	14	3	0	0	0	0.07372	1	9193	9193		38.176	3.7738	1	247010			16837	7506	11154	11267	22629	22629					0.040905750663114304
QVITKEYEL	9	Unmodified	_QVITKEYEL_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8059692382812	2	561.805697	1121.59684	0.1657	9.3094E-05	0.11391	6.3993E-05	0.27961	0.00015709	561.8056720351574	46.256	0.37801	46.342	46.103	46.481	0.085617					27	12	3	0	0	0	0.010235	1	9041	9041		66.457	3.884	1	232980			16838	7506	11154	11267	22630	22630					0.040905750663114304
QVMQIIEHL	9	Unmodified	_QVMQIIEHL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8026733398438	2	555.802434	1109.59032	0.056234	3.1255E-05	-0.057973	-3.2222E-05	-0.0017396	-9.669E-07	555.8023024155325	32.659	0.48804	32.659	32.47	32.958	0					49	23	3	0	0	0	0.3182	1	5065	5065		4.3292	0	1	59220			16839	1591	11155	11268	22631	22631					0.03990358633973301
QVMQIIEHL	9	Unmodified	_QVMQIIEHL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	555.802434	1109.59032	0.20029	0.00011132	-0.24753	-0.00013758	-0.04724	-2.6256E-05	555.8021412731786	32.586	0.29276	32.659	32.544	32.837	0.07378	0.00043909	-0.00020204	NaN	4.3292	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51391			16840	1591	11155	11268							0.03990358633973301
QVNNITEFI	9	Unmodified	_QVNNITEFI_					0	0	0		ENSG00000176540|ENST00000319813|OR4C5	ENSG00000176540|ENST00000319813|OR4C5	ENSG00000176540|ENST00000319813|OR4C5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2823486328125	2	539.282389	1076.55022	0.30563	0.00016482	-0.22251	-0.00012	0.08312	4.4825E-05	539.282187149569	35.291	1.5238	35.37	34.885	36.409	0.078827					139	59	3	0	0	0	0.33704	1	5667	5667		1.8442	0.36234	1	135080			16841	4665	11156	11269	22632	22632					0.01501135235048423
QVNYSFYSW	9	Unmodified	_QVNYSFYSW_					0	0	0		ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7471313476562	2	597.266739	1192.51892	0.6194	0.00036995	-2.6787	-0.0015999	-2.0593	-0.00123	597.7671845882684	82.009	0.57252	82.009	81.716	82.288	0					44	16	3	0	0	0	0.25051	1	20133	20133		7.9102	0	1	159510			16842	2360	11157	11270	22633	22633					-0.06963437799049643
QVPEAWEEL	9	Unmodified	_QVPEAWEEL_					0	0	0		ENSG00000137185|ENST00000252207|ZSCAN9;nc|ENSG00000137185|O15535-2|ZSCAN9	ENSG00000137185|ENST00000252207|ZSCAN9	ENSG00000137185|ENST00000252207|ZSCAN9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7665405273438	2	550.766571	1099.51859	0.21098	0.0001162	-0.19314	-0.00010638	0.017837	9.8243E-06	550.7664806998564	90.006	1.0343	90.04	89.822	90.856	0.034065					84	42	3	0	0	0	0.29576	1	22323	22323		7.2892	0	1	2501400			16843	2835	11158	11271	22634	22634					-0.027188575189029507
QVPPQRCPVEI	11	Unmodified	_QVPPQRCPVEI_					0	0	0		ENSG00000203786|ENST00000606109|KPRP	ENSG00000203786|ENST00000606109|KPRP	ENSG00000203786|ENST00000606109|KPRP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.56103515625	3	422.56054	1264.65979	0.61602	0.0002603	0.63941	0.00027019	1.2554	0.00053049	422.5607359697606	53.761	0.78356	53.761	53.513	54.296	0					49	27	3	0	0	0	0.40087	1	11457	11457		4.1166	0.27072	1	254290			16844	5443	11159	11272	22635	22635					0.038048175827270825
QVRSCMNEPF	10	Unmodified	_QVRSCMNEPF_					0	0	0			REV__ENSG00000188419|ENST00000357749|CHM	REV__ENSG00000188419|ENST00000357749|CHM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.51812744140625	3	404.182964	1209.52706	0.6026	0.00024356	0.076711	3.1005E-05	0.67931	0.00027457	404.18285734129324	47.256	0.46934	47.256	46.998	47.467	0					30	15	3	0	0	0	0.45794	1	9521	9521		1.5923	0	1	47415	+		16845	10770	11160	11273	22636	22636					-0.0693195014559933
QVSKQNEHL	9	Unmodified	_QVSKQNEHL_					0	0	0			REV__ENSG00000134077|ENST00000452837|THUMPD3	REV__ENSG00000134077|ENST00000452837|THUMPD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.305908203125	2	541.783087	1081.55162	0.44569	0.00024147	3.8979	0.0021118	4.3436	0.0023533	541.784994540792	48.319	0.41541	48.399	48.155	48.571	0.080029					21	13	2	0	0	0	0.18364	1	9658	9658		20.454	2.3073	1	114730	+		16846	9160	11161	11274	22637	22637					0.014107693237974672
QVVEEDPEL	9	Unmodified	_QVVEEDPEL_					0	0	0		ENST00000498461.1_1_10:45938876-45939636:+|nuORF;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	ENST00000498461.1_1_10:45938876-45939636:+|nuORF	ENST00000498461.1_1_10:45938876-45939636:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7661743164062	2	529.256037	1056.49752	0.28687	0.00015183	-1.4749	-0.00078061	-1.1881	-0.00062879	529.2552192107595	51.533	0.50885	51.603	51.383	51.892	0.069878					35	17	3	0	0	0	0.029291	2	10623	10623;10675		51.63	11.68	1	171030			16847	441	11162	11275	22638;22639	22638					-0.028468676184274955
QVVTLCLSNI	10	Unmodified	_QVVTLCLSNI_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7876586914062	2	545.302267	1088.58998	0.33146	0.00018075	-3.3938	-0.0018507	-3.0624	-0.0016699	545.3004008793706	56.787	0.30761	56.853	56.683	56.991	0.066452					21	10	3	0	0	0	0.36006	1	12252	12252		16.149	0	1	104700	+		16848	9167	11163	11276	22640	22640					0.04922938914091901
QVVTLCLSNI	10	Unmodified	_QVVTLCLSNI_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.302267	1088.58998	0.33146	0.00018075	-3.3938	-0.0018507	-3.0624	-0.0016699	545.3004008793706	56.787	0.30761	56.853	56.683	56.991	0.066452	0.015155	-2.2972E-05	NaN	16.149	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104700	+		16849	9167	11163	11276							0.04922938914091901
QVVVVRKR	8	Unmodified	_QVVVVRKR_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.84783935546875	2	492.327268	982.639983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.62	1	113.63	113.13	114.13	0.013817								0	0	0	0.38822	1	28969	28969		0.69038	0.088878	1				16850	5172	11164	11277	22641	22641					0.1479685442493519
QVYQGMGQPL	10	Unmodified	_QVYQGMGQPL_					0	0	0		ENST00000556421.5_1_14:23416818-23417238:-|nuORF	ENST00000556421.5_1_14:23416818-23417238:-|nuORF	ENST00000556421.5_1_14:23416818-23417238:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7651977539062	2	560.776416	1119.53828	-0.10583	-5.9349E-05	0.10951	6.1409E-05	0.0036739	2.0603E-06	560.7764484698905	44.387	0.99035	44.387	44.034	45.024	0					53	34	3	0	0	0	0.42335	1	8601	8601		9.3831	1.2276	1	78209			16851	7129	11165	11278	22642	22642					-0.016708047797692416
QWCRDLQL	8	Unmodified	_QWCRDLQL_					0	0	0		nc|ENSG00000135637|Q17RM4-3|CCDC142;nc|ENSG00000135637|Q17RM4-2|CCDC142;ENSG00000135637|ENST00000393965|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2615966796875	2	531.263476	1060.5124	0.44014	0.00023383	-4.0086	-0.0021296	-3.5685	-0.0018958	531.2610487209388	82.06	0.34604	82.082	81.876	82.222	0.021866					20	11	2	0	0	0	0.46788	1	19924	19924		17.113	2.2746	1	104890			16852	2740	11166	11279	22643	22643					-0.015436542314091639
QWDLVENYL	9	Unmodified	_QWDLVENYL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ENST00000507620.2_1_3:142215312-142218583:-|nuORF	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.852294921875	2	590.287671	1178.56079	0.48448	0.00028598	-0.11333	-6.6899E-05	0.37114	0.00021908	590.2875584155503	85.795	0.52531	85.795	85.579	86.104	0					34	21	2	0	0	0	0.20294	1	21252	21252		24.991	0	1	341140			16853	74	11167	11280	22644	22644					-0.02134882110522085
QWDLVENYL	9	Unmodified	_QWDLVENYL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ENST00000507620.2_1_3:142215312-142218583:-|nuORF	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8526000976562	2	590.287671	1178.56079	0.66675	0.00039357	-0.45299	-0.0002674	0.21376	0.00012618	590.2874647478465	85.797	0.48912	85.822	85.599	86.088	0.025169					36	17	3	0	0	0	0.079214	1	21060	21060		53.404	7.7044	1	268040			16854	74	11167	11280	22645	22645					-0.02134882110522085
QWDPFHPA	8	Unmodified	_QWDPFHPA_					0	0	0			REV__SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|69|3|anti-sense	REV__SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|69|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.75311279296875	2	499.229959	996.445365	-0.084151	-4.2011E-05	3.5964	0.0017955	3.5123	0.0017534	499.23170504202324	43.994	0.52097	43.994	43.748	44.269	0					24	17	2	0	0	0	0.3576	1	8503	8503		5.2307	1.6342	1	68325	+		16855	13014	11168	11281	22646	22646					-0.05299941450869028
QWEDLTPLTF	10	Unmodified	_QWEDLTPLTF_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3084716796875	2	625.308603	1248.60265	-0.03233	-2.0216E-05	0.18961	0.00011857	0.15728	9.8351E-05	625.3085505228655	90.077	0.44443	90.077	89.811	90.256	0					26	18	2	0	0	0	0.15743	1	22507	22507		38.615	27.12	1	270170			16856	771	11169	11282	22647	22647					-0.011703264220159326
QWEDLTPLTF	10	Unmodified	_QWEDLTPLTF_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.30810546875	2	625.308603	1248.60265	0.04087	2.5556E-05	-0.019312	-1.2076E-05	0.021558	1.348E-05	625.8101341178701	89.971	0.37255	90.005	89.822	90.195	0.034065					21	14	2	0	0	0	0.20229	2	22340	22340;22390		33.445	18.196	1	493120			16857	771	11169	11282	22648;22649	22648					-0.011703264220159326
QWFEYLTF	8	Unmodified	_QWFEYLTF_					0	0	0			REV__ENST00000494174.5_1_20:32245637-32248074:-|nuORF	REV__ENST00000494174.5_1_20:32245637-32248074:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330322265625	2	567.26875	1132.52295	0.25987	0.00014742	0.40333	0.0002288	0.6632	0.00037621	567.2685990668497	86.032	0.43267	86.032	85.83	86.263	0					21	13	2	0	0	0	0.35713	1	21258	21258		9.3474	0	1	152500	+		16858	8981	11170	11283	22650	22650					-0.038013483053418895
QWFWIQRCR	9	Unmodified	_QWFWIQRCR_					0	0	0		ENST00000251849.8_1_3:12660155-12705355:-|nuORF	ENST00000251849.8_1_3:12660155-12705355:-|nuORF	ENST00000251849.8_1_3:12660155-12705355:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.23223876953125	3	441.557353	1321.65023	0.26995	0.0001192	-0.1025	-4.5258E-05	0.16745	7.3939E-05	441.55730150971317	53.23	0.22612	53.296	53.206	53.432	0.06543					13	10	2	0	0	0	0.25964	1	11183	11183		1.0715	0	1	53253			16859	5836	11171	11284	22651	22651					0.00227094087858859
QWGLLWFP	8	Unmodified	_QWGLLWFP_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|342|3|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|342|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2509765625	2	523.776545	1045.53854	-0.13451	-7.0452E-05	0.76226	0.00039925	0.62775	0.0003288	523.7771496421246	43.743	0.32798	43.743	43.617	43.945	0					14	11	2	0	0	0	0.3576	1	8419	8419		2.8892	0	1	45834	+		16860	12676	11172	11285	22652	22652					0.01758983002378045
QWKRMQYVP	9	Unmodified	_QWKRMQYVP_					0	0	0			REV__ENST00000531863.5_1_11:66276783-66276999:+|nuORF	REV__ENST00000531863.5_1_11:66276783-66276999:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3216552734375	2	618.321325	1234.6281	-0.33145	-0.00020495	0.061765	3.8191E-05	-0.26969	-0.00016675	618.3213723666292	71.825	1.2935	71.825	71.53	72.824	0					182	45	5	0	0	0	0.17247	1	17243	17243		21.747	10.923	1	12727000	+		16861	12361	11173	11286	22653	22653					0.02016869619433237
QWKRMQYVP	9	Unmodified	_QWKRMQYVP_					0	0	0			REV__ENST00000531863.5_1_11:66276783-66276999:+|nuORF	REV__ENST00000531863.5_1_11:66276783-66276999:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3213500976562	2	618.321325	1234.6281	-0.2226	-0.00013764	0.003605	2.2291E-06	-0.219	-0.00013541	618.3213262884395	71.775	1.269	71.83	71.54	72.809	0.055939					169	44	5	0	0	0	0.29105	1	17058	17058		7.9102	1.7044	1	15711000	+		16862	12361	11173	11286	22654	22654					0.02016869619433237
QWLAAVLL	8	Unmodified	_QWLAAVLL_					0	0	0		ENSG00000172260|ENST00000357731|NEGR1	ENSG00000172260|ENST00000357731|NEGR1	ENSG00000172260|ENST00000357731|NEGR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2644348144531	2	457.278921	912.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.873	1	79.873	79.373	80.373	0								0	0	0	0.38822	1	19424	19424		2.5775	0	1				16863	4487	11174	11287	22655	22655					0.08351867145142933
QWLHAHHPLHS	11	Unmodified	_QWLHAHHPLHS_					0	0	0		ENST00000537488.1_1_12:7048306-7050940:+|nuORF;ENSG00000111676|ENST00000396684|ATN1	ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENST00000537488.1_1_12:7048306-7050940:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9005432128906	3	454.898655	1361.67414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.433	1	23.532	23.032	24.032	0.099739								0	0	0	0.34083	1	2287	2287		0.45452	0.1855	1				16864	1720	11175	11288	22656	22656					0.007766508458871613
QWLLRPLVL	9	Unmodified	_QWLLRPLVL_					0	0	0		ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.759765625	2	569.360776	1136.707	0.61779	0.00035174	-1.0053	-0.00057237	-0.3875	-0.00022063	569.3601848566419	79.766	0.57967	79.766	79.59	80.169	0					35	19	2	0	0	0	0.11896	1	19404	19404		39.957	24.11	1	268730			16865	1126	11176	11289	22657	22657					0.14411464916020122
QWLLRPLVL	9	Unmodified	_QWLLRPLVL_					0	0	0		ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7597045898438	2	569.360776	1136.707	0.36443	0.00020749	-0.71155	-0.00040513	-0.34711	-0.00019763	569.3604657540272	79.789	0.58669	79.815	79.573	80.16	0.026436					35	20	2	0	0	0	0.082308	1	19230	19230		48.346	35.814	1	347900			16866	1126	11176	11289	22658	22658					0.14411464916020122
QWPEGLKFLF	10	Unmodified	_QWPEGLKFLF_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.8399658203125	2	632.839874	1263.66519	0.57868	0.00036621	-0.50915	-0.00032221	0.069528	4.4E-05	632.8394549659666	84.929	0.44704	84.929	84.742	85.189	0					36	16	3	0	0	0	0.29844	2	21004	20944;21004		22.736	16.531	1	257010			16867	677	11177	11290	22659;22660	22660					0.04390864436845732
QWPEGLKFLF	10	Unmodified	_QWPEGLKFLF_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.3411865234375	2	632.839874	1263.66519	0.59874	0.0003789	-0.38393	-0.00024297	0.21481	0.00013594	632.839387683995	84.956	0.74868	84.979	84.691	85.439	0.023125					57	32	3	0	0	0	0.095946	4	20848	20760;20781;20814;20848		45.7	28.587	1	204370			16868	677	11177	11290	22661;22662;22663;22664	22664					0.04390864436845732
QWPELLLRF	9	Unmodified	_QWPELLLRF_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-2|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.8414306640625	2	601.340041	1200.66553	0.89445	0.00053787	-0.80482	-0.00048397	0.089634	5.39E-05	601.3391572117016	84.731	0.65506	84.731	84.507	85.162	0					64	28	3	0	0	0	0.020768	4	20862	20862;20904;20954;20963		57.722	41.875	1	996540			16869	2337	11178	11291	22665;22666;22667;22668	22665					0.07322284156703063
QWPELLLRF	9	Unmodified	_QWPELLLRF_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-2|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3402099609375	2	601.340041	1200.66553	0.65056	0.00039121	-0.52455	-0.00031543	0.12601	7.5775E-05	601.3394914321171	84.664	0.51546	84.687	84.547	85.063	0.023132					66	27	4	0	0	0	0.07372	3	20723	20723;20767;20772		38.176	29.582	1	824450			16870	2337	11178	11291	22669;22670;22671	22669					0.07322284156703063
QWPPDPPLHF	10	Unmodified	_QWPPDPPLHF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.3062133789062	2	617.306198	1232.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.415	1	71.473	70.973	71.973	0.058578								0	0	0	0.33156	1	16683	16683		10.074	4.3421	1				16871	1937	11179	11292	22672	22672					-0.009151657741313102
QWPPDPPLHF	10	Unmodified	_QWPPDPPLHF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.7628784179688	2	617.306198	1232.59784	-0.27015	-0.00016676	1.2049	0.00074376	0.93471	0.000577	617.3071048248016	72.41	2.2952	72.466	71.024	73.319	0.055931					138	81	2	0	0	0	0.31616	1	17080	17080		10.074	5.7447	1	263290			16872	1937	11179	11292	22673	22673					-0.009151657741313102
QWPWQASLQF	10	Unmodified	_QWPWQASLQF_					0	0	0		nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;ENST00000476848.5_1_21:43803140-43803371:-|nuORF	nc|ENSG00000160183|P57727-4|TMPRSS3	nc|ENSG00000160183|P57727-4|TMPRSS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.81689453125	2	645.81693	1289.61931	0.49448	0.00031935	-0.65391	-0.0004223	-0.15942	-0.00010296	645.8163375945614	92.303	0.69929	92.303	92.014	92.713	0					77	26	4	0	0	0	0.018369	1	23186	23186		69.338	37.301	1	578270			16873	3750	11180	11293	22674	22674					-0.013917807453935893
QWPWQASLQF	10	Unmodified	_QWPWQASLQF_					0	0	0		nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;ENST00000476848.5_1_21:43803140-43803371:-|nuORF	nc|ENSG00000160183|P57727-4|TMPRSS3	nc|ENSG00000160183|P57727-4|TMPRSS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.8168334960938	2	645.81693	1289.61931	0.35402	0.00022863	-0.56308	-0.00036365	-0.20906	-0.00013501	645.8163112877045	92.214	0.78528	92.251	91.992	92.777	0.03653					61	27	3	0	0	0	0.0080344	1	23025	23025		78.06	46.023	1	497980			16874	3750	11180	11293	22675	22675					-0.013917807453935893
QWRKLLKMAQL	11	Unmodified	_QWRKLLKMAQL_					0	0	0		ENST00000494558.5_1_3:150276231-150281349:+|nuORF	ENST00000494558.5_1_3:150276231-150281349:+|nuORF	ENST00000494558.5_1_3:150276231-150281349:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.61767578125	3	472.28323	1413.82786	0.045348	2.1417E-05	0.64951	0.00030675	0.69486	0.00032817	472.28349884786456	94.403	0.7625	94.441	94.079	94.841	0.038086					48	30	2	0	0	0	0.4167	1	23795	23795		0.50596	0	1	91291			16875	6827	11181	11294	22676	22676					0.1374992456721884
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2837829589844	3	481.283503	1440.82868	0.14161	6.8152E-05	0.25122	0.00012091	0.39282	0.00018906	481.2836271951267	94.334	0.52757	94.334	94.084	94.612	0					66	24	3	0	0	0	0.41693	1	23881	23881		0.45452	0.45452	1	188290	+		16876	11472	11182	11295	22677	22677					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2834167480469	3	481.283503	1440.82868	0.18008	8.6667E-05	0.089825	4.3231E-05	0.2699	0.0001299	481.2834637670582	96.865	2.1896	96.865	95.948	98.137	0					220	108	4	0	0	0	0.40824	6	24499	24499;24542;24588;24628;24757;24852		2.4348	1.6583	1	954950	+		16877	11472	11182	11295	22678;22679;22680;22681;22682;22683	22678					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2835388183594	3	481.283503	1440.82868	0.21359	0.0001028	0.058648	2.8226E-05	0.27224	0.00013102	481.2834553790044	96.832	2.3611	96.872	96.005	98.366	0.039772					283	122	4	0	0	0	0.41309	6	24567	24259;24348;24433;24475;24567;24695		1.3296	1.1098	1	823200	+		16878	11472	11182	11295	22684;22685;22686;22687;22688;22689	22688					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	481.283503	1440.82868	0.075305	3.6243E-05	0.33564	0.00016154	0.41094	0.00019778	481.28363314233627	94.253	0.53232	94.291	94.079	94.611	0.038086	-0.021384	6.9448E-05	NaN	0.45452	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225260	+		16879	11472	11182	11295							0.12589900051102632
QWVGACWLGY	10	Unmodified	_QWVGACWLGY_					0	0	0		SLCO1C1|p.W274C|1|0.36|ENSG00000139155|chr12:20721850-20721850|G/T|missense_variant	SLCO1C1|p.W274C|1|0.36|ENSG00000139155|chr12:20721850-20721850|G/T|missense_variant	SLCO1C1|p.W274C|1|0.36|ENSG00000139155|chr12:20721850-20721850|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2918701171875	2	591.773677	1181.5328	0.42428	0.00025108	0.44023	0.00026052	0.86451	0.0005116	591.773994597382	96.463	0.59389	96.463	96.257	96.851	0					71	27	5	0	0	0	0.45239	1	24551	24551		4.3292	0.73274	1	665190			16880	13371	11183	11296	22690	22690					-0.0507048357160329
QYAAALLGALY	11	Unmodified	_QYAAALLGALY_					0	0	0			REV__ENSG00000157214|ENST00000394621|STEAP2	REV__ENSG00000157214|ENST00000394621|STEAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3345947265625	2	577.316232	1152.61791	0.21403	0.00012356	0.2205	0.0001273	0.43453	0.00025086	577.3165982910174	49.1	0.3671	49.1	48.973	49.34	0					27	12	3	0	0	0	0.39378	1	10097	10097		5.7319	0	1	98324	+		16881	9773	11184	11297	22691	22691					0.04770585165852026
QYAAFKRWHF	10	Unmodified	_QYAAFKRWHF_					0	0	0		nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;ENSG00000112031|ENST00000367233|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.8996276855469	3	451.899885	1352.67783	0.32706	0.0001478	-0.60084	-0.00027152	-0.27379	-0.00012372	451.8994931606398	47.294	0.82982	47.377	47.151	47.981	0.083092					66	32	4	0	0	0	0.27838	2	9378	9333;9378		24.882	14.082	1	196130			16882	1739	11185	11298	22692;22693	22693					0.0155932061970816
QYAAVTHNI	9	Unmodified	_QYAAVTHNI_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7614440917969	2	508.761623	1015.50869	0.15295	7.7816E-05	-0.35223	-0.0001792	-0.19928	-0.00010138	508.76138698723935	35.921	0.41499	35.999	35.817	36.232	0.078827					31	15	3	0	0	0	0.28472	1	5942	5942		8.7454	1.4562	1	40621			16883	4838	11186	11299	22694	22694					0.001559992663715093
QYAAVTHNI	9	Unmodified	_QYAAVTHNI_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	508.761623	1015.50869	0.10935	5.5632E-05	-0.60039	-0.00030545	-0.49104	-0.00024982	508.7614180322846	35.973	0.38988	35.973	35.765	36.155	0	-0.013009	-0.00016138	NaN	8.7454	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47034			16884	4838	11186	11299							0.001559992663715093
QYAGKYVLF	9	Unmodified	_QYAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.79248046875	2	544.792392	1087.57023	-0.08701	-4.7402E-05	0.95347	0.00051944	0.86646	0.00047204	544.792508536073	58.654	0.53694	58.654	58.473	59.01	0					36	18	3	0	0	0	0.024893	1	12934	12934		54.774	10.367	1	274640			16885	5538	11187	11300	22695	22695					0.029949309656331025
QYAHLEWLL	9	Unmodified	_QYAHLEWLL_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8092651367188	2	586.808574	1171.60259	0.50164	0.00029437	0.82292	0.0004829	1.3246	0.00077726	586.8089883710427	74.216	0.95456	74.216	74.006	74.961	0					60	35	2	0	0	0	0.0034016	3	17703	17658;17703;17751		107.19	45.83	1	1983200			16886	2085	11188	11301	22696;22697;22698	22697					0.023657183686509597
QYAHLEWLL	9	Unmodified	_QYAHLEWLL_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.8093872070312	2	586.808574	1171.60259	0.7705	0.00045214	0.41547	0.0002438	1.186	0.00069594	586.8087481646475	74.157	0.90964	74.206	73.962	74.872	0.048538					96	32	4	0	0	0	0.0045534	3	17542	17499;17542;17594		88.954	38.099	1	1895800			16887	2085	11188	11301	22699;22700;22701	22700					0.023657183686509597
QYAKDIGFI	9	Unmodified	_QYAKDIGFI_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000496507.1_1_4:25680486-25680639:+|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7732543945312	2	527.782025	1053.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.759	1	54.759	54.259	55.259	0								0	0	0	0.04642	1	11764	11764		49.933	7.8384	1				16888	5555	11189	11302	22702	22702					0.024863405860060084
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.28985595703125	2	511.289485	1020.56442	0.37329	0.00019086	0.19679	0.00010062	0.57008	0.00029148	511.2895935868058	91.134	1.5976	91.134	90.808	92.405	0					144	58	5	0	0	0	0.004541	2	22861	22861;22903		89.427	35.851	1	7004700			16889	2784	11190	11303	22703;22704	22703					0.0549583245398253
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2898254394531	2	511.289485	1020.56442	0.15088	7.7143E-05	0.4133	0.00021132	0.56418	0.00028846	511.2896980887499	91.122	1.5153	91.157	90.797	92.312	0.035446					130	53	5	0	0	0	0.004541	1	22696	22696		89.427	35.851	1	4997700			16890	2784	11190	11303	22705	22705					0.0549583245398253
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.739990234375	2	506.740357	1011.46616	0.12047	6.1045E-05	-0.88164	-0.00044676	-0.76117	-0.00038572	506.7398401427446	50.189	0.46848	50.189	49.935	50.404	0					37	16	3	0	0	0	0.018465	1	10359	10359		59.368	13.347	1	185800			16891	2184	11191	11304	22706	22706					-0.03911395861860001
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7400817871094	2	506.740357	1011.46616	0.21498	0.00010894	-0.41314	-0.00020935	-0.19816	-0.00010042	506.7401030483371	50.092	0.40599	50.165	49.979	50.385	0.07312					24	13	2	0	0	0	0.0081278	1	10213	10213		72.968	18.194	1	208470			16892	2184	11191	11304	22707	22707					-0.03911395861860001
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2667846679688	2	542.266542	1082.51853	0.60035	0.00032555	0.58886	0.00031932	1.1892	0.00064487	542.2669548196869	64.789	1.196	64.789	64.382	65.578	0					102	43	4	0	0	0	0.00052627	5	14843	14797;14843;14904;14912;14963		131.3	83.549	1	1476900			16893	3012	11192	11305	22708;22709;22710;22711;22712	22709					-0.019428127282481
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.266845703125	2	542.266542	1082.51853	0.53064	0.00028775	0.4138	0.00022439	0.94443	0.00051213	542.2666936701002	64.776	0.98509	64.845	64.587	65.572	0.068909					97	37	4	0	0	0	0.00052627	4	14694	14641;14694;14744;14806		131.3	93.147	1	1702000			16894	3012	11192	11305	22713;22714;22715;22716	22714					-0.019428127282481
QYASRFVQL	9	Unmodified	_QYASRFVQL_					0	0	0		ENST00000507454.1_1_4:128812246-128813710:+|nuORF;nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	ENST00000507454.1_1_4:128812246-128813710:+|nuORF	ENST00000507454.1_1_4:128812246-128813710:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2984619140625	2	556.298373	1110.58219	0.33321	0.00018536	0.13774	7.6626E-05	0.47095	0.00026199	556.2982464645	51.941	1.1272	51.941	51.713	52.841	0					74	39	3	0	0	0	0.00017524	1	10914	10914		118.07	65.8	1	686640			16895	3119	11193	11306	22717	22717					0.03132547708855782
QYASRFVQL	9	Unmodified	_QYASRFVQL_					0	0	0		ENST00000507454.1_1_4:128812246-128813710:+|nuORF;nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	ENST00000507454.1_1_4:128812246-128813710:+|nuORF	ENST00000507454.1_1_4:128812246-128813710:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	556.298373	1110.58219	0.51878	0.0002886	-0.1488	-8.278E-05	0.36998	0.00020582	556.298161448869	51.859	0.92455	51.927	51.707	52.632	0.067169	-0.0072287	-0.00016656	NaN	118.07	62	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535450			16896	3119	11193	11306							0.03132547708855782
QYATLGDYF	9	Unmodified	_QYATLGDYF_					0	0	0		nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.248291015625	2	539.248015	1076.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.768	1	73.821	73.321	74.321	0.052574								0	0	0	0.16903	1	17402	17402		22.736	3.4793	1				16897	445	11194	11307	22718	22718					-0.053705290646803405
QYDEAVAQF	9	Unmodified	_QYDEAVAQF_					0	0	0		ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	ENST00000529239.1_1_8:61850552-61850903:-|nuORF	ENST00000529239.1_1_8:61850552-61850903:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7432861328125	2	535.743096	1069.47164	0.37153	0.00019905	0.0023717	1.2706E-06	0.37391	0.00020032	535.7430102450176	57.076	0.68244	57.076	56.831	57.514	0					68	24	4	0	0	0	0.0042703	1	12461	12461		99.755	38.398	1	1658400			16898	2595	11195	11308	22719	22719					-0.06031717070072773
QYDEAVAQF	9	Unmodified	_QYDEAVAQF_					0	0	0		ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	ENST00000529239.1_1_8:61850552-61850903:-|nuORF	ENST00000529239.1_1_8:61850552-61850903:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7431030273438	2	535.743096	1069.47164	0.64595	0.00034606	-0.24787	-0.0001328	0.39807	0.00021326	535.742861098348	57.009	1.2789	57.075	56.853	58.132	0.066505					90	48	4	0	0	0	0.0043658	1	12298	12298		96.111	21.182	1	1283300			16899	2595	11195	11308	22720	22720					-0.06031717070072773
QYDGIFYEF	9	Unmodified	_QYDGIFYEF_					0	0	0		ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.261474609375	2	591.261122	1180.50769	0.72273	0.00042733	-0.15465	-9.1436E-05	0.56809	0.00033589	591.2609356513944	85.014	0.64451	85.014	84.838	85.482	0					63	22	4	0	0	0	0.0043658	3	20979	20979;21031;21038		96.111	61.709	1	1202600			16900	2807	11196	11309	22721;22722;22723	22721					-0.0753425989319112
QYDGIFYEF	9	Unmodified	_QYDGIFYEF_					0	0	0		ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.26123046875	2	591.261122	1180.50769	0.73616	0.00043526	-0.10996	-6.5017E-05	0.62619	0.00037024	591.2609601896768	85.051	0.65011	85.074	84.877	85.527	0.023125					62	26	3	0	0	0	0.0028323	3	20857	20812;20857;20873		110.67	74.548	1	1099200			16901	2807	11196	11309	22724;22725;22726	22725					-0.0753425989319112
QYDKRKKKRKK	11	Unmodified	_QYDKRKKKRKK_					0	0	0			REV__AKAP7|p.I239*|1|0.21|ENSG00000118507|chr6:131219667-131219667|A/-|frameshift_variant	REV__AKAP7|p.I239*|1|0.21|ENSG00000118507|chr6:131219667-131219667|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.65020751953125	3	502.651081	1504.93141	-0.090988	-4.5735E-05	-1.3222	-0.00066459	-1.4132	-0.00071032	502.65024554759725	107.54	0.26358	107.54	107.35	107.61	0					61	26	3	0	0	0	0.4185	1	27754	27754		0.094841	0.094841	1	151570	+		16902	7706	11197	11310	22727	22727					0.19914547999178467
QYDKRKKKRKK	11	Unmodified	_QYDKRKKKRKK_					0	0	0			REV__AKAP7|p.I239*|1|0.21|ENSG00000118507|chr6:131219667-131219667|A/-|frameshift_variant	REV__AKAP7|p.I239*|1|0.21|ENSG00000118507|chr6:131219667-131219667|A/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	502.651081	1504.93141	-0.090988	-4.5735E-05	-1.3222	-0.00066459	-1.4132	-0.00071032	502.65024554759725	107.54	0.26358	107.54	107.35	107.61	0	0.027497	0.00022159	NaN	0.094841	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151570	+		16903	7706	11197	11310							0.19914547999178467
QYEEQFVTL	9	Unmodified	_QYEEQFVTL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7791137695312	2	578.779679	1155.5448	0.57443	0.00033247	0.1128	6.5288E-05	0.68724	0.00039776	578.7791452528705	69.282	0.62903	69.282	69.132	69.761	0					40	21	3	0	0	0	0.03918	1	16205	16205		45.7	12.914	1	312470			16904	925	11198	11311	22728	22728					-0.02674588347417739
QYEEQFVTL	9	Unmodified	_QYEEQFVTL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7782592773438	2	578.779679	1155.5448	0.31279	0.00018104	-0.45333	-0.00026238	-0.14054	-8.1342E-05	578.7791988768606	69.263	0.61487	69.325	69.054	69.669	0.062119					35	22	2	0	0	0	0.10543	1	16057	16057		31.268	10.854	1	347130			16905	925	11198	11311	22729	22729					-0.02674588347417739
QYEIWREL	8	Unmodified	_QYEIWREL_					0	0	0		nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7581787109375	2	568.790381	1135.56621	-0.054722	-3.1125E-05	-3.5368	-0.0020117	-3.5916	-0.0020428	569.2900885442762	58.488	0.090252	58.488	58.416	58.506	0					4	2	2	0	0	0	0.3576	1	12901	12901		5.2307	0.47466	1	30067			16906	4264	11199	11312	22730	22730					0.003848414719413995
QYEIWRELF	9	Unmodified	_QYEIWRELF_					0	0	0		nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3247680664062	2	642.324588	1282.63462	0.56194	0.00036095	-0.26422	-0.00016971	0.29772	0.00019123	642.3243744513827	79.705	0.80482	79.705	79.452	80.257	0					85	27	4	0	0	0	9.6107E-13	2	19381	19334;19381		181.69	121.62	1	1782400			16907	4264	11200	11313	22731;22732	22732					0.0046108605179142614
QYEIWRELF	9	Unmodified	_QYEIWRELF_					0	0	0		nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3246459960938	2	642.324588	1282.63462	0.26944	0.00017307	0.05649	3.6285E-05	0.32593	0.00020935	642.3245576392142	79.669	1.0246	79.695	79.464	80.488	0.026428					91	36	4	0	0	0	4.1025E-13	2	19222	19172;19222		189.73	135.9	1	1644400			16908	4264	11200	11313	22733;22734	22734					0.0046108605179142614
QYEQVKQLF	9	Unmodified	_QYEQVKQLF_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.8114013671875	2	591.811313	1181.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.232	1	53.297	52.797	53.797	0.06543								0	0	0	0.096229	1	11161	11161		34.402	10.612	1				16909	2281	11201	11314	22735	22735					0.02453397160456916
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.80078125	2	588.800414	1175.58628	0.50427	0.00029691	0.31358	0.00018464	0.81785	0.00048155	588.8005826848282	57.85	0.59377	57.85	57.623	58.217	0					84	20	5	0	0	0	7.3095E-13	4	12713	12671;12713;12757;12804		185.05	126.37	1	4737300			16910	2388	11202	11315	22736;22737;22738;22739	22737					0.005505924119233896
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8012084960938	2	588.800414	1175.58628	0.15933	9.3813E-05	-0.9524	-0.00056078	-0.79308	-0.00046696	588.8006080055501	58.37	1.2786	58.37	58.256	59.535	0					78	47	4	0	0	0	0.0074933	1	12872	12872		74.929	28.908	1	358330			16911	2388	11202	11315	22740	22740					0.005505924119233896
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8008422851562	2	588.800414	1175.58628	0.52705	0.00031033	0.28503	0.00016783	0.81208	0.00047815	588.8005993712063	57.78	1.2844	57.848	57.577	58.861	0.068375					131	46	5	0	0	0	7.3095E-13	5	12556	12516;12556;12598;12680;12730		185.05	128.27	1	4182800			16912	2388	11202	11315	22741;22742;22743;22744;22745	22742					0.005505924119233896
QYFCAPAPLSP	11	Unmodified	_QYFCAPAPLSP_					0	0	0		ENSG00000108387|ENST00000672673|SEPTIN4;ENST00000584528.5_1_17:56603756-56609324:-|nuORF;ENST00000580791.1_1_17:56603756-56605258:-|nuORF;ENST00000584789.1_1_17:56603775-56609324:-|nuORF;ENST00000580796.5_1_17:56603775-56604561:-|nuORF;ENST00000585170.1_1_17:56603775-56604489:-|nuORF;ENST00000583273.5_1_17:56603775-56606703:-|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;nc|ENSG00000108387|O43236-2|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENST00000584488.5_1_17:56598198-56606616:-|nuORF	ENSG00000108387|ENST00000672673|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.6605834960938	2	597.286617	1192.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.282	1	99.325	98.825	99.825	0.042839								0	0	0	0.33873	1	25170	25170		1.1933	0.59184	1				16913	1589	11203	11316	22746	22746					-0.029896341199901144
QYFLLDIAF	9	Unmodified	_QYFLLDIAF_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.288818359375	2	565.30005	1128.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.754	1	97.795	97.295	98.295	0.040855								0	0	0	0.23884	1	24709	24709		11.64	0	1				16914	4590	11204	11317	22747	22747					0.026397977628448643
QYFRIEDAFV	10	Unmodified	_QYFRIEDAFV_					0	0	0			REV__ENSG00000130037|ENST00000252321|KCNA5	REV__ENSG00000130037|ENST00000252321|KCNA5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	430.556884765625	3	429.883789	1286.62954	0.58184	0.00025012	2.4511	0.0010537	3.033	0.0013038	429.8845409399745	60.769	0.38847	60.769	60.643	61.032	0					19	13	2	0	0	0	0.31843	1	13583	13583		1.5923	0.39894	1	99639	+		16915	9044	11205	11318	22748	22748					-0.0023121781082409143
QYGKDFLTL	9	Unmodified	_QYGKDFLTL_					0	0	0		ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.78662109375	2	542.787307	1083.56006	0.31674	0.00017192	-1.9464	-0.0010565	-1.6296	-0.00088455	542.787142391399	60.882	0.66898	60.956	60.719	61.388	0.073421					34	22	2	0	0	0	0.028398	1	13487	13487		52.268	23.187	1	146120			16916	2500	11206	11319	22749	22749					0.02162323240418118
QYHFVFNNF	9	Unmodified	_QYHFVFNNF_					0	0	0		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.2838745117188	2	608.282723	1214.55089	0.92492	0.00056261	-0.53004	-0.00032241	0.39488	0.0002402	608.2825406721121	66.314	0.52872	66.314	66.106	66.635	0					38	19	3	0	0	0	0.11816	1	15321	15321		30.637	15.388	1	230810			16917	7606	11207	11320	22750	22750					-0.04780025325248971
QYHFVFNNF	9	Unmodified	_QYHFVFNNF_					0	0	0		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.2824096679688	2	608.282723	1214.55089	0.87672	0.0005333	-0.83832	-0.00050993	0.038407	2.3362E-05	608.2821328155059	66.282	0.48113	66.349	66.189	66.67	0.066872					32	18	2	0	0	0	0.020768	1	15119	15119		64.236	37.968	1	324170			16918	7606	11207	11320	22751	22751					-0.04780025325248971
QYHGLLFPW	9	Unmodified	_QYHGLLFPW_					0	0	0			REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.797119140625	2	580.798009	1159.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.41	1	114.41	113.91	114.91	0								0	0	0	0.29233	1	29223	29223		0.6015	0	1		+		16919	10104	11208	11321	22752	22752					0.008057530597852747
QYIAFIKGW	9	Unmodified	_QYIAFIKGW_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|125|2|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|125|2|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7540283203125	2	563.30821	1124.60187	-0.11692	-6.586E-05	-1.1415	-0.00064303	-1.2584	-0.00070889	563.3075440528875	31.27	0.25118	31.27	31.181	31.432	0					16	11	2	0	0	0	0.25579	1	4715	4715		4.3292	0.38484	1	19670	+		16920	12710	11209	11322	22753	22753					0.04454923719617909
QYIDKLNAL	9	Unmodified	_QYIDKLNAL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3008422851562	2	539.300581	1076.58661	0.3459	0.00018654	-0.024773	-1.336E-05	0.32112	0.00017318	539.3005925389391	53.355	0.62774	53.355	53.213	53.841	0					51	25	3	0	0	0	0.091044	1	11355	11355		34.402	13.987	1	269550			16921	456	11210	11323	22754	22754					0.05138012131760661
QYIDKLNAL	9	Unmodified	_QYIDKLNAL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.30078125	2	539.300581	1076.58661	0.56675	0.00030565	-0.17188	-9.2695E-05	0.39487	0.00021295	539.3004290898416	53.36	0.37472	53.425	53.222	53.597	0.06543					40	18	3	0	0	0	0.20358	1	11217	11217		18.146	8.0724	1	213330			16922	456	11210	11323	22755	22755					0.05138012131760661
QYIDKLNEL	9	Unmodified	_QYIDKLNEL_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2860107421875	2	568.303321	1134.59209	0.33768	0.0001919	-0.19967	-0.00011347	0.13801	7.843E-05	568.3031198281985	53.625	0.36163	53.625	53.451	53.813	0					33	13	3	0	0	0	0.020768	2	11400	11400;11450		57.722	19.748	1	384710			16923	1900	11211	11324	22756;22757	22756					0.030176909235706262
QYIDKLNEL	9	Unmodified	_QYIDKLNEL_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.788818359375	2	568.303321	1134.59209	0.4036	0.00022937	-0.13256	-7.5332E-05	0.27105	0.00015404	568.30323390837	53.609	0.33248	53.675	53.534	53.866	0.06543					37	14	3	0	0	0	0.018465	2	11270	11270;11318		59.368	17.529	1	351160			16924	1900	11211	11324	22758;22759	22758					0.030176909235706262
QYIDVSHVF	9	Unmodified	_QYIDVSHVF_					0	0	0		ENST00000588021.5_1_19:6007990-6026242:-|nuORF;nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2	ENST00000588021.5_1_19:6007990-6026242:-|nuORF	ENST00000588021.5_1_19:6007990-6026242:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3137817382812	2	554.277106	1106.53966	0.67139	0.00037213	0.30677	0.00017003	0.97815	0.00054217	554.2771914536202	64.218	0.37875	64.218	64.078	64.457	0					27	12	3	0	0	0	0.24635	1	14651	14651		10.824	1.4765	1	120950			16925	1005	11212	11325	22760	22760					-0.009348474193984657
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.31280517578125	2	508.312961	1014.61137	0.10342	5.2572E-05	0.026265	1.3351E-05	0.12969	6.5923E-05	508.3129359907602	89.677	0.45319	89.677	89.505	89.958	0					30	17	2	0	0	0	0.25979	2	22397	22397;22443		11.64	1.5664	1	144060			16926	4046	11213	11326	22761;22762	22761					0.10464692005132292
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.312744140625	2	508.312961	1014.61137	0.12644	6.4273E-05	-0.10306	-5.2387E-05	0.023383	1.1886E-05	508.3127508919901	89.638	0.44522	89.672	89.486	89.932	0.034058					30	16	3	0	0	0	0.25979	2	22216	22216;22265		11.64	1.5664	1	150000			16927	4046	11213	11326	22763;22764	22763					0.10464692005132292
QYILFPLRF	9	Unmodified	_QYILFPLRF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8451538085938	2	598.844959	1195.67537	0.72191	0.00043231	-0.11783	-7.0564E-05	0.60408	0.00036175	598.8447678146013	84.256	2.363	84.256	83.9	86.263	0					247	111	5	0	0	0	9.8596E-13	7	20760	20710;20760;20795;20849;20891;20933;20978		181.33	137.47	1	18155000			16928	1257	11214	11327	22765;22766;22767;22768;22769;22770;22771	22766					0.08535472162066071
QYILFPLRF	9	Unmodified	_QYILFPLRF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.845458984375	2	598.844959	1195.67537	0.37914	0.00022705	0.12905	7.7281E-05	0.50819	0.00030433	598.8450449810413	84.158	2.6445	84.18	83.889	86.533	0.021744					319	123	5	0	0	0	9.8596E-13	6	20592	20546;20592;20631;20722;20765;20819		181.33	132.98	1	20789000			16929	1257	11214	11327	22772;22773;22774;22775;22776;22777	22773					0.08535472162066071
QYKDNIRH	8	Unmodified	_QYKDNIRH_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2927856445312	2	537.277972	1072.54139	0.53736	0.00028871	2.8576	0.0015353	3.3949	0.001824	537.2793782520603	48.384	0.35175	48.464	48.219	48.571	0.080029					18	11	3	0	0	0	0.28175	1	9710	9710		36.044	7.5574	1	107010			16930	3247	11215	11328	22778	22778					0.008022063892212827
QYKGIIWLI	9	Unmodified	_QYKGIIWLI_					0	0	0			REV__ENST00000480101.1_1_3:142499823-142503920:+|nuORF	REV__ENST00000480101.1_1_3:142499823-142503920:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7279663085938	2	567.33951	1132.66447	0.71866	0.00040772	0.71177	0.00040382	1.4304	0.00081154	567.3398465789953	81.697	0.49764	81.697	81.434	81.931	0					32	16	3	0	0	0	0.25579	1	19923	19923		4.3292	2.0265	1	98938	+		16931	12078	11216	11329	22779	22779					0.10344069787788612
QYKMILTHC	9	Unmodified	_QYKMILTHC_					0	0	0			REV__nc|ENSG00000216937|Q96M83-5|CCDC7	REV__nc|ENSG00000216937|Q96M83-5|CCDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7876586914062	2	568.783187	1135.55182	-0.19141	-0.00010887	-1.2148	-0.00069094	-1.4062	-0.00079982	568.78237515558	28.306	0.34475	28.306	28.119	28.463	0					29	18	2	0	0	0	0.34704	1	3759	3759		0.52476	0	1	51975	+		16932	12891	11217	11330	22780	22780					-0.010532702722002796
QYLDISVFKF	10	Unmodified	_QYLDISVFKF_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8388061523438	2	630.337164	1258.65977	0.64831	0.00040865	-0.098923	-6.2355E-05	0.54938	0.0003463	630.3368120127251	81.591	0.29092	81.591	81.489	81.78	0					12	9	2	0	0	0	0.43771	1	19953	19953		7.1017	1.8048	1	108540			16933	4566	11218	11331	22781	22781					0.04079140854355501
QYLDISVFKF	10	Unmodified	_QYLDISVFKF_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.336669921875	2	630.337164	1258.65977	0.4481	0.00028246	0.13627	8.5893E-05	0.58437	0.00036835	630.3370692890675	81.6	0.31635	81.621	81.475	81.792	0.021866					20	11	3	0	0	0	0.43771	1	19804	19804		7.1017	2.7725	1	109160			16934	4566	11218	11331	22782	22782					0.04079140854355501
QYLDNLLVRF	10	Unmodified	_QYLDNLLVRF_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.8536987304688	2	640.853512	1279.69247	0.2115	0.00013554	0.16771	0.00010748	0.37921	0.00024302	640.8535972188395	77.886	0.67802	77.886	77.716	78.394	0					50	22	4	0	0	0	0.00018049	3	18812	18812;18857;18919		100.71	55.009	1	893700			16935	2166	11219	11332	22783;22784;22785	22783					0.06381347977230689
QYLDNLLVRF	10	Unmodified	_QYLDNLLVRF_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.8534545898438	2	640.853512	1279.69247	0.37633	0.00024117	-0.055582	-3.562E-05	0.32075	0.00020556	640.8534070789265	77.886	0.64313	77.921	77.708	78.351	0.034485					48	21	4	0	0	0	0.051426	2	18691	18640;18691		57.249	35.712	1	637490			16936	2166	11219	11332	22786;22787	22787					0.06381347977230689
QYLEEAPKF	9	Unmodified	_QYLEEAPKF_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3369750976562	2	562.784764	1123.55498	0.17951	0.00010102	-0.36262	-0.00020408	-0.18311	-0.00010305	562.7845451274616	51.683	0.46214	51.683	51.448	51.91	0					23	15	2	0	0	0	0.20294	1	10821	10821		24.991	11.483	1	90280			16937	381	11220	11333	22788	22788					-0.0018598062220007705
QYLEHILGF	9	Unmodified	_QYLEHILGF_					0	0	0		ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2955932617188	2	560.295299	1118.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.018	1	74.018	73.518	74.518	0								0	0	0	0.0048139	1	17632	17632		74.423	34.465	1				16938	5592	11221	11334	22789	22789					0.02150029477343196
QYLEKYYNL	9	Unmodified	_QYLEKYYNL_					0	0	0		ENSG00000166670|ENST00000279441|MMP10;chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.3121948242188	2	617.311146	1232.60774	0.05345	3.2996E-05	0.46769	0.00028871	0.52114	0.00032171	617.311137829329	54.923	0.73508	54.923	54.706	55.441	0					50	26	3	0	0	0	0.0021834	3	11812	11799;11812;11856		114.65	70.877	1	456820			16939	4172	11222	11335	22790;22791;22792	22791					0.0007397744061563571
QYLEKYYNL	9	Unmodified	_QYLEKYYNL_					0	0	0		ENSG00000166670|ENST00000279441|MMP10;chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.311279296875	2	617.311146	1232.60774	0.1389	8.5742E-05	0.45425	0.00028042	0.59315	0.00036616	617.3113045832489	54.922	0.63654	54.987	54.826	55.463	0.065128					49	25	3	0	0	0	0.0040275	2	11677	11677;11731		103.35	63.404	1	450550			16940	4172	11222	11335	22793;22794	22793					0.0007397744061563571
QYLELAHSL	9	Unmodified	_QYLELAHSL_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2850952148438	2	537.284931	1072.55531	0.33277	0.00017879	-0.21508	-0.00011556	0.11769	6.3231E-05	537.2848231556243	57.001	0.6582	57.001	56.805	57.463	0					52	23	3	0	0	0	0.0005281	1	12439	12439		131.27	83.519	1	835040			16941	3786	11223	11336	22795	22795					0.021934390976412033
QYLELAHSL	9	Unmodified	_QYLELAHSL_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2853393554688	2	537.284931	1072.55531	0.59015	0.00031708	-0.29914	-0.00016072	0.29102	0.00015636	537.2847608285601	56.906	0.59587	56.972	56.795	57.391	0.066452					38	22	2	0	0	0	8.9867E-09	1	12279	12279		160.52	108.25	1	732400			16942	3786	11223	11336	22796	22796					0.021934390976412033
QYLENLEKL	9	Unmodified	_QYLENLEKL_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000540706.5_1_16:21899129-21899858:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.310791015625	2	575.311146	1148.60774	0.18247	0.00010498	-0.62755	-0.00036104	-0.44508	-0.00025606	575.3105847301027	58.19	0.19001	58.19	58.027	58.217	0					14	6	3	0	0	0	0.0097877	1	12811	12811		67.838	11.661	1	250730			16943	3647	11224	11337	22797	22797					0.03937977440614304
QYLENLEKL	9	Unmodified	_QYLENLEKL_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000540706.5_1_16:21899129-21899858:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.311279296875	2	575.311146	1148.60774	0.054506	3.1358E-05	-0.61454	-0.00035355	-0.56004	-0.00032219	575.3107241691287	58.391	0.21702	58.391	58.256	58.473	0					16	8	2	0	0	0	0.17382	1	12873	12873		21.59	3.4552	1	224820			16944	3647	11224	11337	22798	22798					0.03937977440614304
QYLENLEKL	9	Unmodified	_QYLENLEKL_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000540706.5_1_16:21899129-21899858:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.310546875	2	575.311146	1148.60774	0.22813	0.00013125	-0.65436	-0.00037646	-0.42623	-0.00024522	575.3105927836868	58.237	0.39053	58.308	58.056	58.446	0.070477					28	14	3	0	0	0	0.029591	1	12694	12694		55.235	9.2137	1	235140			16945	3647	11224	11337	22799	22799					0.03937977440614304
QYLEQSSKL	9	Unmodified	_QYLEQSSKL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2876586914062	2	548.287671	1094.56079	0.36201	0.00019849	-0.077833	-4.2675E-05	0.28418	0.00015581	548.2875664319309	37.847	0.53268	37.847	37.675	38.207	0					38	18	3	0	0	0	0.19307	2	6676	6627;6676		19.362	19.362	1	181100			16946	4650	11225	11338	22800;22801	22801					0.017291178894765835
QYLEQSSKL	9	Unmodified	_QYLEQSSKL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2879028320312	2	548.287671	1094.56079	0.38968	0.00021366	0.054405	2.9829E-05	0.44409	0.00024349	548.2876325586474	37.788	0.67335	37.873	37.654	38.328	0.084476					41	23	3	0	0	0	0.15482	2	6479	6479;6524		23.79	9.8837	1	142050			16947	4650	11225	11338	22802;22803	22802					0.017291178894765835
QYLFPSFETF	10	Unmodified	_QYLFPSFETF_					0	0	0		ENST00000543420.5_1_12:10464095-10467389:+|nuORF;ENST00000539374.1_1_12:10464095-10467389:+|nuORF;nc|ENSG00000134539|Q13241-3|KLRD1;ENSG00000134539|ENST00000336164|KLRD1;nc|ENSG00000134539|Q13241-2|KLRD1	ENST00000543420.5_1_12:10464095-10467389:+|nuORF	ENST00000543420.5_1_12:10464095-10467389:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.8070068359375	2	639.805697	1277.59684	0.50076	0.00032039	0.14575	9.3254E-05	0.64652	0.00041364	640.3071513513402	93.145	0.42891	93.145	92.982	93.411	0					34	16	3	0	0	0	0.14333	2	23442	23442;23506		40.239	32.084	1	187090			16948	2677	11226	11339	22804;22805	22804					-0.030854249336925932
QYLFPSFETF	10	Unmodified	_QYLFPSFETF_					0	0	0		ENST00000543420.5_1_12:10464095-10467389:+|nuORF;ENST00000539374.1_1_12:10464095-10467389:+|nuORF;nc|ENSG00000134539|Q13241-3|KLRD1;ENSG00000134539|ENST00000336164|KLRD1;nc|ENSG00000134539|Q13241-2|KLRD1	ENST00000543420.5_1_12:10464095-10467389:+|nuORF	ENST00000543420.5_1_12:10464095-10467389:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.8063354492188	2	639.805697	1277.59684	0.45291	0.00028978	0.29774	0.0001905	0.75065	0.00048027	639.8057301595474	93.115	0.49867	93.152	92.949	93.448	0.037369					46	21	4	0	0	0	0.06541	2	23282	23282;23327		53.404	41.163	1	164890			16949	2677	11226	11339	22806;22807	22806					-0.030854249336925932
QYLGQIQHI	9	Unmodified	_QYLGQIQHI_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2984619140625	2	550.298373	1098.58219	0.26578	0.00014626	0.057945	3.1887E-05	0.32372	0.00017814	550.2983223401004	49.016	0.70684	49.016	48.801	49.508	0					32	19	2	0	0	0	0.0046499	1	10009	10009		85.272	43.432	1	331550			16950	4675	11227	11340	22808	22808					0.03684547708849095
QYLGQIQHI	9	Unmodified	_QYLGQIQHI_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2984008789062	2	550.298373	1098.58219	0.20506	0.00011285	-0.070626	-3.8865E-05	0.13444	7.3981E-05	550.2983023873284	48.897	0.558	48.974	48.78	49.338	0.076603					44	16	3	0	0	0	0.0043613	2	9848	9848;9884		96.285	37.606	1	293210			16951	4675	11227	11340	22809;22810	22809					0.03684547708849095
QYLKILTSL	9	Unmodified	_QYLKILTSL_					0	0	0		nc|ENSG00000085382|Q8IYU2-4|HACE1;ENSG00000085382|ENST00000262903|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3162841796875	2	539.828975	1077.6434	0.43108	0.00023271	-0.26702	-0.00014414	0.16406	8.8566E-05	539.8289355367592	68.208	0.30622	68.208	68.07	68.377	0					18	10	2	0	0	0	0.30757	1	15837	15837		5.7319	0.97584	1	92171			16952	958	11228	11341	22811	22811					0.10768059688280118
QYLKILTSL	9	Unmodified	_QYLKILTSL_					0	0	0		nc|ENSG00000085382|Q8IYU2-4|HACE1;ENSG00000085382|ENST00000262903|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8290405273438	2	539.828975	1077.6434	0.49087	0.00026499	-0.20131	-0.00010867	0.28956	0.00015631	539.8288700918391	68.551	0.61638	68.615	68.383	69	0.063507					45	23	3	0	0	0	0.12214	1	15869	15869		27.629	0	1	358240			16953	958	11228	11341	22812	22812					0.10768059688280118
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.30810546875	2	542.307875	1082.6012	0.77043	0.00041781	-0.11573	-6.2762E-05	0.6547	0.00035505	542.3076327055112	84.879	0.64265	84.879	84.668	85.311	0					66	24	4	0	0	0	0.0052407	3	20972	20918;20972;21026		81.89	42.624	1	1556700			16954	4081	11229	11342	22813;22814;22815	22814					0.06320084279900584
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.3079833984375	2	542.307875	1082.6012	0.66644	0.00036141	-0.013565	-7.3565E-06	0.65287	0.00035406	542.3077005230164	84.859	0.63906	84.882	84.631	85.27	0.023125					75	28	4	0	0	0	0.0084662	3	20753	20753;20800;20846		71.922	25.901	1	1673800			16955	4081	11229	11342	22816;22817;22818	22816					0.06320084279900584
QYLPAIRALW	10	Unmodified	_QYLPAIRALW_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.8531494140625	2	615.853316	1229.69208	-0.035228	-2.1695E-05	-0.11675	-7.1903E-05	-0.15198	-9.3598E-05	615.853154895371	74.729	0.56211	74.729	74.527	75.09	0					42	20	3	0	0	0	0.032065	1	17833	17833		62.573	37.173	1	396220			16956	2107	11230	11343	22819	22819					0.0864197304802019
QYLPAIRALW	10	Unmodified	_QYLPAIRALW_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.8536376953125	2	615.853316	1229.69208	-0.022635	-1.394E-05	-0.063098	-3.8859E-05	-0.085733	-5.2799E-05	615.8532163421237	74.713	0.54915	74.762	74.541	75.09	0.048546					40	19	3	0	0	0	0.055325	2	17664	17664;17715		56.177	33.441	1	427390			16957	2107	11230	11343	22820;22821	22820					0.0864197304802019
QYLPHVARL	9	Unmodified	_QYLPHVARL_					0	0	0		nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4;ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF	nc|ENSG00000148248|O15260-3|SURF4	nc|ENSG00000148248|O15260-3|SURF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.8168334960938	2	548.816733	1095.61891	0.068553	3.7623E-05	-0.1108	-6.081E-05	-0.042249	-2.3187E-05	548.8167435802311	43.455	0.69976	43.544	43.329	44.029	0.088924					54	25	4	0	0	0	0.20358	1	8229	8229		18.146	7.3224	1	239740			16958	3354	11231	11344	22822	22822					0.07492844325406622
QYLPYISYL	9	Unmodified	_QYLPYISYL_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.3054809570312	2	580.305332	1158.59611	0.16405	9.5197E-05	0.048183	2.7961E-05	0.21223	0.00012316	580.3053287726093	86.751	0.71089	86.751	86.5	87.211	0					101	30	6	0	0	0	5.0762E-05	4	21526	21484;21526;21569;21639		139.14	57.525	1	3637400			16959	4227	11232	11345	22823;22824;22825;22826	22824					0.023157804172797114
QYLPYISYL	9	Unmodified	_QYLPYISYL_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3054809570312	2	580.305332	1158.59611	0.37533	0.00021781	-0.040077	-2.3257E-05	0.33526	0.00019455	580.3053049493632	86.714	0.6923	86.741	86.484	87.176	0.027573					98	30	5	0	0	0	0.0014903	4	21350	21312;21350;21398;21440		118.89	47.761	1	4345800			16960	4227	11232	11345	22827;22828;22829;22830	22828					0.023157804172797114
QYLQKVVL	8	Unmodified	_QYLQKVVL_					0	0	0		nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT	nc|ENSG00000137948|Q58F21-4|BRDT	nc|ENSG00000137948|Q58F21-4|BRDT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.80279541015625	2	495.80276	989.590967	0.83758	0.00041527	-0.52781	-0.00026169	0.30976	0.00015358	495.80243124683454	65.864	0.64995	65.864	65.598	66.248	0					32	22	2	0	0	0	0.52924	1	15117	15117		8.5933	0.68312	1	254700			16961	2882	11233	11346	22831	22831					0.09575521345323068
QYLRRLHYF	9	Unmodified	_QYLRRLHYF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.57159423828125	3	432.571768	1294.69348	-0.43414	-0.0001878	-0.59507	-0.00025741	-1.0292	-0.00044521	432.571571757785	41.024	1.9792	41.113	40.801	42.78	0.089645					223	77	5	0	0	0	0.03472	5	7476	7431;7476;7517;7565;7617		47.749	25.012	1	1356200			16962	4948	11234	11347	22832;22833;22834;22835;22836	22833					0.057916071367799304
QYLRVETQF	9	Unmodified	_QYLRVETQF_					0	0	0		nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3087768554688	2	592.308938	1182.60332	0.22255	0.00013182	0.69567	0.00041205	0.91822	0.00054387	592.3094735128051	52.91	0.68152	52.91	52.729	53.41	0					68	26	4	0	0	0	0.0016755	2	11178	11178;11226		117.76	59.082	1	622640			16963	7629	11235	11348	22837;22838	22837					0.019325130176866878
QYLRVETQF	9	Unmodified	_QYLRVETQF_					0	0	0		nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3090209960938	2	592.308938	1182.60332	0.39123	0.00023173	0.90018	0.00053318	1.2914	0.00076491	592.3094847274043	52.842	0.64508	52.907	52.722	53.367	0.06543					53	29	2	0	0	0	0.0016755	3	11043	11024;11043;11088		117.76	59.082	1	450490			16964	7629	11235	11348	22839;22840;22841	22840					0.019325130176866878
QYLSFMKK	8	Unmodified	_QYLSFMKK_					0	0	0			REV__tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	REV__tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7952880859375	2	522.78097	1043.54739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.432	1	32.506	32.006	33.006	0.07378								0	0	0	0.38822	1	4899	4899		5.7319	0.43497	1		+		16965	13181	11236	11349	22842	22842					0.027355885765246057
QYLSSIQHL	9	Unmodified	_QYLSSIQHL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7903442382812	2	544.790381	1087.56621	0.18305	9.9725E-05	-0.23601	-0.00012857	-0.052953	-2.8848E-05	544.7901662577973	51.246	0.52785	51.246	51.034	51.562	0					39	17	3	0	0	0	0.017478	1	10701	10701		60.074	23.947	1	267490			16966	513	11237	11350	22843	22843					0.025928414719373905
QYLSSIQHL	9	Unmodified	_QYLSSIQHL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7906494140625	2	544.790381	1087.56621	0.29633	0.00016144	-0.14904	-8.1197E-05	0.14728	8.0238E-05	544.7903506606592	51.17	0.48232	51.24	51.021	51.503	0.069878					41	18	3	0	0	0	0.0093779	1	10536	10536		69.105	40.023	1	233140			16967	513	11237	11350	22844	22844					0.025928414719373905
QYLTEHFFI	9	Unmodified	_QYLTEHFFI_					0	0	0			REV__ENST00000582381.1_1_17:26902119-26903857:-|nuORF	REV__ENST00000582381.1_1_17:26902119-26903857:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3016967773438	2	599.300581	1196.58661	0.44331	0.00026568	-0.020378	-1.2213E-05	0.42294	0.00025347	599.3003739298871	47.446	0.43976	47.529	47.376	47.816	0.083096					23	17	2	0	0	0	0.34646	1	9471	9471		0.6015	0	1	71877	+		16968	8633	11238	11351	22845	22845					-0.003819878682406852
QYLTSVQQL	9	Unmodified	_QYLTSVQQL_					0	0	0		ENSG00000182504|ENST00000341893|CEP97;nc|ENSG00000182504|Q8IW35-2|CEP97	ENSG00000182504|ENST00000341893|CEP97	ENSG00000182504|ENST00000341893|CEP97	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.8089599609375	2	540.290214	1078.56587	0.36923	0.00019949	0.21949	0.00011859	0.58872	0.00031808	540.2904620674371	60.707	0.39595	60.78	60.605	61	0.073418					19	13	2	0	0	0	0.056368	1	13419	13419		41.956	7.5538	1	83984			16969	4877	11239	11352	22846	22846					0.029734217520854145
QYLVEVRGQ	9	Unmodified	_QYLVEVRGQ_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-8|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-8|DMBT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.3085327148438	2	546.29583	1090.57711	-0.10218	-5.5822E-05	0.8023	0.00043829	0.70012	0.00038247	546.2962096137398	30.712	0.32766	30.712	30.623	30.951	0					28	16	2	0	0	0	0.30757	1	4508	4508		5.7319	0	1	28281	+		16970	10752	11240	11353	22847	22847					0.03544243846226891
QYLVEVRGQ	9	Unmodified	_QYLVEVRGQ_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-8|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-8|DMBT1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	546.29583	1090.57711	-0.10218	-5.5822E-05	0.8023	0.00043829	0.70012	0.00038247	546.2962096137398	30.712	0.32766	30.712	30.623	30.951	0	-0.021505	5.0447E-05	NaN	5.7319	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28281	+		16971	10752	11240	11353							0.03544243846226891
QYLVEVRGQ	9	Unmodified	_QYLVEVRGQ_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-8|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-8|DMBT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	546.29583	1090.57711	-0.063168	-3.4508E-05	0.71307	0.00038955	0.64991	0.00035504	546.2962141651676	30.679	0.34626	30.755	30.663	31.009	0.075403	0.021505	-4.7045E-05	NaN	5.7319	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28672	+		16972	10752	11240	11353							0.03544243846226891
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(140)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.3186645507812	2	605.318448	1208.62234	0.75336	0.00045602	-0.41375	-0.00025045	0.33961	0.00020557	605.3182214035876	55.5	0.9018	55.5	55.215	56.116	0					99	31	5	0	0	0	0.00015475	2	11993	11946;11993		137.42	95.584	1	2168000			16973	4530	11241	11354	22848;22849	22849		268			0.02637726317107081
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(150)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.3184814453125	2	605.318448	1208.62234	0.51917	0.00031427	-0.47103	-0.00028512	0.048144	2.9143E-05	605.318112126665	56.819	2.1234	56.819	56.094	58.217	0					213	77	4	0	0	0	8.9172E-06	1	12386	12386		149.91	99.981	1	2185100			16974	4530	11241	11354	22850	22850		268			0.02637726317107081
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(130)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3186645507812	2	605.318448	1208.62234	0.77217	0.00046741	-0.3466	-0.0002098	0.42557	0.0002576	605.3182750417528	55.435	0.73804	55.5	55.242	55.98	0.065128					83	27	5	0	0	0	0.00041987	2	11844	11796;11844		133.05	83.119	1	1925600			16975	4530	11241	11354	22851;22852	22852		268			0.02637726317107081
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(130)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3187255859375	2	605.318448	1208.62234	0.68511	0.00041471	-0.56732	-0.00034341	0.11779	7.13E-05	605.3180759223438	56.742	2.1509	56.808	55.981	58.132	0.066452					202	81	4	0	0	0	0.00087611	1	12224	12224		125.53	83.69	1	1771300			16976	4530	11241	11354	22853	22853		268			0.02637726317107081
QYMERLQLL	9	Unmodified	_QYMERLQLL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3198852539062	2	597.320991	1192.62743	0.30845	0.00018425	-1.3712	-0.00081906	-1.0628	-0.00063481	597.3201178965527	62.361	0.68481	62.361	62.227	62.912	0					61	24	4	0	0	0	0.0028323	1	14087	14087		110.67	51.996	1	660170			16977	4530	11241	11355	22854	22854					0.03882030179738649
QYMERLQLL	9	Unmodified	_QYMERLQLL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3214111328125	2	597.320991	1192.62743	0.19646	0.00011735	-1.3573	-0.00081075	-1.1609	-0.0006934	597.320078208764	62.27	0.6221	62.343	62.208	62.83	0.073421					49	21	3	0	0	0	0.017478	1	13948	13948		60.074	24.03	1	469960			16978	4530	11241	11355	22855	22855					0.03882030179738649
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2855834960938	2	568.285797	1134.55704	-0.19739	-0.00011218	0.45585	0.00025906	0.25846	0.00014688	568.2860085746872	27.868	0.5619	27.868	27.684	28.246	0					78	30	4	0	0	0	0.047633	3	3678	3638;3678;3691		43.858	32.218	1	197420			16979	3450	11242	11356	22856;22857;22858	22857					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2857666015625	2	568.285797	1134.55704	-0.16322	-9.2754E-05	0.4938	0.00028062	0.33058	0.00018787	568.2860281033439	27.758	0.7066	27.841	27.661	28.368	0.082132					94	41	4	0	0	0	0.0046499	3	3515	3475;3515;3596		85.272	63.525	1	265120			16980	3450	11242	11356	22859;22860;22861	22860					-0.004855070937082928
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7977905273438	2	569.798206	1137.58186	-0.25044	-0.0001427	-0.18133	-0.00010332	-0.43177	-0.00024602	569.797940780437	45.146	0.81408	45.146	44.968	45.782	0					87	28	4	0	0	0	0.0016252	2	8830	8830;8881		118.07	74.21	1	903040			16981	1962	11243	11357	22862;22863	22862					0.018571279890011283
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7977294921875	2	569.798206	1137.58186	0.01134	6.4613E-06	-0.10969	-6.2499E-05	-0.098346	-5.6038E-05	569.7980591994346	45.075	0.79359	45.163	44.935	45.729	0.08754					76	29	3	0	0	0	0.0016252	2	8679	8679;8725		118.07	72.047	1	834260			16982	1962	11243	11357	22864;22865	22864					0.018571279890011283
QYNTYPIKL	9	Unmodified	_QYNTYPIKL_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.30859375	2	570.308406	1138.60226	0.55483	0.00031642	0.040428	2.3056E-05	0.59525	0.00033948	570.3083172845517	54.946	0.66378	55.011	54.738	55.402	0.065128					64	27	3	0	0	0	0.032194	1	11705	11705		49.554	29.101	1	588170			16983	626	11244	11358	22866	22866					0.038502986487856106
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.8425903320312	2	643.842613	1285.67067	0.43269	0.00027859	-0.035644	-2.2949E-05	0.39705	0.00025564	643.8425364598916	69.005	0.4413	69.005	68.749	69.191	0					37	16	3	0	0	0	0.015562	1	16112	16112		71.708	46.717	1	333920			16984	626	11245	11359	22867	22867					0.03926543228635637
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3433837890625	2	643.842613	1285.67067	0.59284	0.00038169	-0.39714	-0.00025569	0.1957	0.000126	643.8421227965941	82.127	0.72743	82.127	81.836	82.563	0					47	25	3	0	0	0	0.38912	2	20076	20076;20142		13.042	1.5478	1	178640			16985	626	11245	11359	22868;22869	22868					0.03926543228635637
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.842529296875	2	643.842613	1285.67067	0.14216	9.1528E-05	0.16266	0.00010473	0.30482	0.00019626	643.8425040880495	68.907	0.32098	68.969	68.821	69.142	0.062126					28	11	3	0	0	0	0.017192	1	15927	15927		70.332	49.917	1	333270			16986	626	11245	11359	22870	22870					0.03926543228635637
QYPDHVGP	8	Unmodified	_QYPDHVGP_					0	0	0			REV__ENST00000460547.6_1_6:43481320-43483845:-|nuORF	REV__ENST00000460547.6_1_6:43481320-43483845:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.8919677734375	2	456.714142	911.413731	-0.0015209	-6.9461E-07	0.11021	5.0335E-05	0.10869	4.964E-05	456.71407826012205	31.559	0.38123	31.559	31.412	31.793	0					22	16	2	0	0	0	0.3576	1	4723	4723		5.2307	2.9279	1	21393	+		16987	11958	11246	11360	22871	22871					-0.04551934204812369
QYPEHISNI	9	Unmodified	_QYPEHISNI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.263427734375	2	550.772188	1099.52982	-0.51189	-0.00028193	-0.18423	-0.00010147	-0.69612	-0.0003834	550.7718990614513	41.744	0.33535	41.744	41.575	41.91	0					21	12	2	0	0	0	0.034936	1	7818	7818		47.594	18.513	1	172520			16988	2244	11247	11361	22872	22872					-0.015960354247681607
QYPEHISNI	9	Unmodified	_QYPEHISNI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.263427734375	2	550.772188	1099.52982	-0.27651	-0.00015229	-0.0032746	-1.8035E-06	-0.27978	-0.0001541	550.7719261744982	41.644	0.37099	41.734	41.596	41.967	0.089764					24	14	2	0	0	0	0.25376	1	7700	7700		6.2058	0.47393	1	161760			16989	2244	11247	11361	22873	22873					-0.015960354247681607
QYPFPLPVF	9	Unmodified	_QYPFPLPVF_					0	0	0		ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2974853515625	2	554.29731	1106.58007	0.7354	0.00040763	-0.22114	-0.00012258	0.51426	0.00028505	554.2970771380265	97.761	1.0102	97.761	97.461	98.471	0					153	51	5	0	0	0	0.00014496	4	24851	24806;24851;24893;24936		137.59	76.228	1	2408500			16990	3248	11248	11362	22874;22875;22876;22877	22875					0.031041189710322215
QYPFPLPVF	9	Unmodified	_QYPFPLPVF_					0	0	0		ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2979125976562	2	554.29731	1106.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.292	1	98.292	97.792	98.792	0								0	0	0	0.14119	1	25026	25026		26.884	3.7352	1				16991	3248	11248	11362	22878	22878					0.031041189710322215
QYPFPLPVF	9	Unmodified	_QYPFPLPVF_					0	0	0		ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2975463867188	2	554.29731	1106.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.435	1	98.435	97.935	98.935	0								0	0	0	0.20792	1	25069	25069		16.942	2.104	1				16992	3248	11248	11362	22879	22879					0.031041189710322215
QYPFPLPVF	9	Unmodified	_QYPFPLPVF_					0	0	0		ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2974853515625	2	554.29731	1106.58007	0.78723	0.00043636	-0.12161	-6.7411E-05	0.66562	0.00036895	554.2971761147777	97.744	1.1135	97.785	97.489	98.602	0.040855					189	57	5	0	0	0	0.0021353	5	24700	24657;24700;24743;24835;24874		114.94	53.586	1	2170800			16993	3248	11248	11362	22880;22881;22882;22883;22884	22881					0.031041189710322215
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7879638671875	2	533.787641	1065.56073	0.26744	0.00014276	0.70184	0.00037463	0.96928	0.00051739	533.7878005322444	52.839	2.0644	52.839	52.337	54.401	0					222	77	5	0	0	0	0.0044564	3	11172	11133;11172;11380		92.653	60.348	1	2140900			16994	1036	11249	11363	22885;22886;22887	22886					0.030571626801247476
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7879638671875	2	533.787641	1065.56073	0.53505	0.0002856	0.2634	0.0001406	0.79845	0.0004262	533.787602661257	52.786	1.1664	52.853	52.318	53.484	0.067169					162	51	4	0	0	0	0.0050339	3	11028	10954;10982;11028		82.529	46.402	1	1923400			16995	1036	11249	11363	22888;22889;22890	22890					0.030571626801247476
QYPPVNWAALL	11	Unmodified	_QYPPVNWAALL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.343017578125	2	636.342781	1270.67101	0.33568	0.0002136	-0.14363	-9.14E-05	0.19204	0.0001222	636.3427998689751	94.034	0.33597	94.034	93.963	94.299	0					34	18	3	0	0	0	0.36299	1	23729	23729		10.8	3.6978	1	235930			16996	5153	11250	11364	22891	22891					0.04649962948519715
QYPPVNWAALL	11	Unmodified	_QYPPVNWAALL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.34326171875	2	636.342781	1270.67101	0.33692	0.00021439	-0.27044	-0.00017209	0.066473	4.23E-05	636.3424733153188	93.998	0.37106	94.036	93.972	94.343	0.038094					30	18	2	0	0	0	0.20727	1	23582	23582		29.082	14.243	1	175330			16997	5153	11250	11364	22892	22892					0.04649962948519715
QYPVFPWVL	9	Unmodified	_QYPVFPWVL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.8114624023438	2	574.810585	1147.60662	0.44203	0.00025408	0.28758	0.0001653	0.72961	0.00041938	574.8107256732515	99.858	0.32489	99.858	99.772	100.1	0					32	18	3	0	0	0	0.22344	1	25503	25503		15.847	0	1	292080			16998	3779;4519	11251	11365	22893	22893					0.03871807862356036
QYPVFPWVL	9	Unmodified	_QYPVFPWVL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.810302734375	2	574.810585	1147.60662	0.38976	0.00022404	-0.4811	-0.00027654	-0.091338	-5.2502E-05	574.8100840678219	100.57	0.29382	100.57	100.48	100.78	0					28	17	2	0	0	0	0.29576	1	25715	25715		7.2892	0	1	62466			16999	3779;4519	11251	11365	22894	22894					0.03871807862356036
QYPVFPWVL	9	Unmodified	_QYPVFPWVL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8106079101562	2	574.810585	1147.60662	0.47302	0.0002719	-0.5521	-0.00031735	-0.079072	-4.5451E-05	574.8102435090963	100.58	0.23923	100.62	100.49	100.73	0.042839					26	15	2	0	0	0	0.25979	1	25563	25563		11.64	0	1	43476			17000	3779;4519	11251	11365	22895	22895					0.03871807862356036
QYPVIIHLI	9	Unmodified	_QYPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3319702148438	2	548.331685	1094.64882	0.090158	4.9437E-05	0.86209	0.00047271	0.95225	0.00052215	548.3319253346514	73.178	1.2472	73.178	72.582	73.829	0					111	44	4	0	0	0	0.00065346	1	17371	17371		129.2	75.625	1	1329500			17001	699	11252	11366	22896	22896					0.10527783270754298
QYPVIIHLI	9	Unmodified	_QYPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.33203125	2	548.331685	1094.64882	0.23925	0.00013119	0.72963	0.00040008	0.96888	0.00053127	548.3319144138655	73.085	1.1939	73.138	72.743	73.937	0.052574					109	44	4	0	0	0	0.032034	1	17194	17194		49.669	36.161	1	1318000			17002	699	11252	11366	22897	22897					0.10527783270754298
QYPVIIHLIW	10	Unmodified	_QYPVIIHLIW_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3718872070312	2	641.371341	1280.72813	0.5495	0.00035243	-0.18586	-0.00011921	0.36364	0.00023323	641.371352739223	85.228	0.59399	85.228	84.865	85.459	0					52	20	3	0	0	0	0.020733	3	21040	20990;21040;21086		67.344	41.945	1	369070			17003	699	11253	11367	22898;22899;22900	22899					0.09899430224891148
QYPVIIHLIW	10	Unmodified	_QYPVIIHLIW_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3716430664062	2	641.371341	1280.72813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.618	1	85.618	85.118	86.118	0								0	0	0	0.33395	1	21172	21172		7.2892	0.56607	1				17004	699	11253	11367	22901	22901					0.09899430224891148
QYPVIIHLIW	10	Unmodified	_QYPVIIHLIW_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3720092773438	2	641.371341	1280.72813	0.58042	0.00037227	-0.20367	-0.00013063	0.37675	0.00024164	641.3713891992832	85.217	0.96236	85.24	84.877	85.839	0.023125					78	38	3	0	0	0	0.0035275	5	20882	20833;20882;20928;20981;21057		81.864	49.559	1	424590			17005	699	11253	11367	22902;22903;22904;22905;22906	22903					0.09899430224891148
QYPYLQAFF	9	Unmodified	_QYPYLQAFF_					0	0	0		ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3433227539062	2	588.78985	1175.56515	0.30244	0.00017807	0.41537	0.00024456	0.71781	0.00042264	588.7900082815129	89.762	0.80401	89.762	89.244	90.048	0					69	30	3	0	0	0	0.13166	1	22419	22419		37.974	20.861	1	273330			17006	3565	11254	11368	22907	22907					-0.015613728969810836
QYPYLQAFF	9	Unmodified	_QYPYLQAFF_					0	0	0		ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.34326171875	2	588.78985	1175.56515	0.38642	0.00022752	0.67327	0.00039642	1.0597	0.00062394	588.7899346701543	89.682	0.65639	89.716	89.303	89.959	0.034065					52	24	3	0	0	0	0.13166	1	22255	22255		24.021	14.637	1	279540			17007	3565	11254	11368	22908	22908					-0.015613728969810836
QYQFIDYR	8	Unmodified	_QYQFIDYR_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2774047851562	2	566.774731	1131.53491	0.27014	0.00015311	1.2238	0.00069362	1.4939	0.00084673	567.2776203697342	105.55	0.50229	105.58	105.44	105.94	0.029732					81	55	2	0	0	0	0.53614	1	27020	27020		3.9444	0	1	63655	+		17008	10482	11255	11369	22909	22909					-0.025597315621553207
QYQFPPPLI	9	Unmodified	_QYQFPPPLI_					0	0	0		ENST00000582655.5_1_17:27237828-27251299:-|nuORF;nc|ENSG00000109118|Q96QT6-2|PHF12;ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;ENSG00000109118|ENST00000332830|PHF12	ENST00000582655.5_1_17:27237828-27251299:-|nuORF	ENST00000582655.5_1_17:27237828-27251299:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2732543945312	2	551.800217	1101.58588	0.73336	0.00040467	-0.065556	-3.6174E-05	0.6678	0.00036849	551.8001498603784	82.129	0.88677	82.129	81.836	82.723	0					46	31	2	0	0	0	0.25051	1	20191	20191		7.9102	2.1783	1	182020			17009	1625	11256	11370	22910	22910					0.03915217482699518
QYQQIISRL	9	Unmodified	_QYQQIISRL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.8262329101562	2	574.824755	1147.63496	0.22261	0.00012796	1.1431	0.00065706	1.3657	0.00078502	574.8251479974183	53.219	0.42958	53.219	53.06	53.49	0					49	18	4	0	0	0	0.0034159	2	11301	11301;11327		107.1	53.696	1	552760			17010	1440	11257	11371	22911;22912	22911					0.0670450577167685
QYQQIISRL	9	Unmodified	_QYQQIISRL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8261108398438	2	574.824755	1147.63496	0.38491	0.00022125	1.0106	0.00058094	1.3956	0.0008022	574.8252545659336	53.183	0.41272	53.248	53.107	53.519	0.06543					48	20	3	0	0	0	0.002259	2	11149	11149;11168		114.19	60.782	1	540440			17011	1440	11257	11371	22913;22914	22913					0.0670450577167685
QYRLFVLF	8	Unmodified	_QYRLFVLF_					0	0	0			REV__ENST00000496444.1_1_2:11300571-11300830:+|nuORF	REV__ENST00000496444.1_1_2:11300571-11300830:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7438354492188	2	543.310752	1084.60695	0.37022	0.00020115	0.45755	0.00024859	0.82777	0.00044974	543.3106971255029	76.444	0.25124	76.444	76.331	76.582	0					20	8	3	0	0	0	0.48651	1	18345	18345		14.582	0	1	185850	+		17012	9919	11258	11372	22915	22915					0.06803227582213367
QYSIISNVF	9	Unmodified	_QYSIISNVF_					0	0	0		ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7794189453125	2	535.779482	1069.54441	0.48194	0.00025821	-0.87412	-0.00046834	-0.39218	-0.00021012	535.7788278559043	79.28	0.43583	79.28	79.1	79.536	0					25	14	2	0	0	0	0.032194	1	19248	19248		49.554	3.8547	1	274040			17013	3858	11259	11373	22916	22916					0.0124203672337444
QYSIISNVF	9	Unmodified	_QYSIISNVF_					0	0	0		ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	535.779482	1069.54441	0.48193	0.00025821	-1.1766	-0.00063037	-0.69462	-0.00037216	535.7787343460647	79.255	0.36591	79.281	79.098	79.464	0.026436	0.00042662	-0.00016863	NaN	49.554	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305480			17014	3858	11259	11373							0.0124203672337444
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7457275390625	2	545.745639	1089.47673	0.48065	0.00026231	0.16045	8.7563E-05	0.64109	0.00034987	545.7455731445474	75.032	0.76411	75.032	74.767	75.532	0					71	28	3	0	0	0	0.006264	2	17967	17919;17967		78.728	48.092	1	1524700			17015	3046	11260	11374	22917;22918	22918					-0.06443413207443882
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7457885742188	2	545.745639	1089.47673	0.3872	0.00021132	0.15355	8.3802E-05	0.54076	0.00029512	545.7455956235472	75.084	0.75395	75.128	74.841	75.595	0.044037					64	27	3	0	0	0	0.006264	2	17802	17754;17802		78.728	48.092	1	1534600			17016	3046	11260	11374	22919;22920	22920					-0.06443413207443882
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.27142333984375	2	505.271293	1008.52803	0.42507	0.00021477	-0.095845	-4.8428E-05	0.32922	0.00016635	505.27119350244965	82.523	0.76093	82.523	82.229	82.99	0					77	26	4	0	0	0	0.0044607	3	20241	20192;20241;20289		92.491	35.02	1	1639600			17017	917	11261	11375	22921;22922;22923	22922					0.024109555572863428
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.2713928222656	2	505.271293	1008.52803	0.24648	0.00012454	0.071813	3.6285E-05	0.31829	0.00016082	505.27127741072866	82.53	0.66096	82.552	82.27	82.931	0.021751					70	23	4	0	0	0	0.0052407	3	20081	20031;20081;20127		81.89	33.544	1	1482300			17018	917	11261	11375	22924;22925;22926	22925					0.024109555572863428
QYSQHFAFI	9	Unmodified	_QYSQHFAFI_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3402709960938	2	570.777274	1139.53999	0.097132	5.5441E-05	-0.26532	-0.00015144	-0.16818	-9.5996E-05	570.7774678449988	59.262	0.61786	59.262	59.062	59.68	0					38	22	2	0	0	0	0.090621	1	13117	13117		37.974	13.3	1	245920			17019	809	11262	11376	22927	22927					-0.024194276995331165
QYSQHFAFI	9	Unmodified	_QYSQHFAFI_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.340087890625	2	570.777274	1139.53999	0.16524	9.4316E-05	-0.73242	-0.00041805	-0.56718	-0.00032374	570.7772078605519	59.185	0.52991	59.257	59.043	59.572	0.072342					36	20	2	0	0	0	0.11896	1	12958	12958		39.957	15.283	1	212590			17020	809	11262	11376	22928	22928					-0.024194276995331165
QYSSFFLYL	9	Unmodified	_QYSSFFLYL_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A;nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	ENSG00000156875|ENST00000370152|MFSD14A;nc|ENSG00000148110|Q5SR56-2|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2900390625	2	584.289682	1166.56481	0.4664	0.00027251	0.28606	0.00016714	0.75245	0.00043965	584.2897201418953	95.229	0.57093	95.229	94.896	95.467	0					65	24	4	0	0	0	0.083124	2	24117	24071;24117		36.127	10.728	1	624210			17021	3640;3349	11263	11377	22929;22930	22930					-0.011807926167875848
QYSSFFLYL	9	Unmodified	_QYSSFFLYL_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A;nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	ENSG00000156875|ENST00000370152|MFSD14A;nc|ENSG00000148110|Q5SR56-2|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2901000976562	2	584.289682	1166.56481	0.53218	0.00031095	0.26703	0.00015602	0.79921	0.00046697	584.2896639082719	95.228	0.68468	95.267	94.792	95.477	0.038872					82	28	5	0	0	0	0.083124	1	23954	23954		36.127	11.136	1	605870			17022	3640;3349	11263	11377	22931	22931					-0.011807926167875848
QYSYIDFKF	9	Unmodified	_QYSYIDFKF_					0	0	0		RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion;nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216	RNF216-MTHFD1L|2|fusion;nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7927856445312	2	605.792589	1209.57063	0.81841	0.00049578	-0.074871	-4.5356E-05	0.74353	0.00045043	605.7921407371733	70.231	1.2152	70.231	69.672	70.888	0					110	44	3	0	0	0	0.047066	1	16524	16524		43.982	27.04	1	622290			17023	13350;427	11264	11378	22932	22932					-0.02577694105161754
QYSYIDFKF	9	Unmodified	_QYSYIDFKF_					0	0	0		RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion;nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216	RNF216-MTHFD1L|2|fusion;nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7930908203125	2	605.792589	1209.57063	0.83131	0.0005036	-0.35535	-0.00021527	0.47596	0.00028833	605.7919793649289	70.141	1.0055	70.202	69.751	70.756	0.060562					104	41	3	0	0	0	0.038996	1	16310	16310		45.74	11.637	1	621710			17024	13350;427	11264	11378	22933	22933					-0.02577694105161754
QYTDLLRLF	9	Unmodified	_QYTDLLRLF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.8220825195312	2	584.821681	1167.62881	0.61901	0.00036201	0.048551	2.8394E-05	0.66756	0.0003904	584.8217210737753	83.042	0.52342	83.042	82.848	83.371	0					44	17	4	0	0	0	7.3095E-13	1	20389	20389		185.05	120.81	1	700440			17025	5550	11265	11379	22934	22934					0.05169987540125476
QYTFVGDIF	9	Unmodified	_QYTFVGDIF_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3170776367188	2	545.266207	1088.51786	0.55151	0.00030072	0.20127	0.00010975	0.75279	0.00041047	545.2665638577574	85.388	0.56721	85.388	85.189	85.757	0					49	24	3	0	0	0	0.12752	1	21098	21098		39.95	20.693	1	646400			17026	1338	11266	11380	22935	22935					-0.02285652167961416
QYTFVGDIF	9	Unmodified	_QYTFVGDIF_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.317138671875	2	545.266207	1088.51786	0.66579	0.00036303	0.10091	5.5024E-05	0.7667	0.00041806	545.2664323425768	85.372	0.5647	85.396	85.156	85.72	0.023125					56	22	3	0	0	0	0.12752	1	20932	20932		32.786	18.88	1	564970			17027	1338	11266	11380	22936	22936					-0.02285652167961416
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ASAP2-CPSF3|2|fusion	ASAP2-CPSF3|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2891845703125	2	564.290214	1126.56587	0.36892	0.00020818	-0.21453	-0.00012106	0.15439	8.7122E-05	564.2898639233401	47.627	0.61485	47.627	47.372	47.986	0					40	20	4	0	0	0	0.0077293	1	9576	9576		74.2	15.521	1	218820			17028	57;56	11267	11381	22937	22937					0.007654217520666862
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ASAP2-CPSF3|2|fusion	ASAP2-CPSF3|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2896118164062	2	564.290214	1126.56587	0.49346	0.00027845	0.2732	0.00015417	0.76666	0.00043262	564.2900533546606	47.54	0.46924	47.623	47.405	47.874	0.083096					39	18	3	0	0	0	0.056368	2	9412	9412;9457		41.956	11.319	1	212430			17029	57;56	11267	11381	22938;22939	22938					0.007654217520666862
QYVAKREFNN	10	Unmodified	_QYVAKREFNN_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.810546875	2	634.822744	1267.63093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.439	1	70.5	70	71	0.060562								0	0	0	0.29565	1	16386	16386		18.146	1.0335	1		+		17030	10314	11268	11382	22940	22940					0.007824162779570543
QYVAMFTNI	9	Unmodified	_QYVAMFTNI_					0	0	0		ENST00000252108.7_1_11:118268072-118268138:+|nuORF	ENST00000252108.7_1_11:118268072-118268138:+|nuORF	ENST00000252108.7_1_11:118268072-118268138:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7692260742188	2	543.76806	1085.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.297	1	34.373	33.873	34.873	0.076244								0	0	0	0.28724	1	5455	5455		1.6526	0.17072	1				17031	5837	11269	11383	22941	22941					-0.017773056657460984
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		nc|ENSG00000134899|P28715-2|ERCC5;ENSG00000134899|ENST00000652225|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2777709960938	2	582.277638	1162.54072	0.31934	0.00018594	-0.021098	-1.2285E-05	0.29824	0.00017366	582.277485788866	50.943	1.8745	50.943	50.68	52.555	0					130	64	6	0	0	0	1.2994E-17	3	10609	10563;10609;10663		203.64	144.96	1	2268300			17032	2698	11270	11384	22942;22943;22944	22943					-0.03404633050490702
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		nc|ENSG00000134899|P28715-2|ERCC5;ENSG00000134899|ENST00000652225|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2778930664062	2	582.277638	1162.54072	0.52596	0.00030625	-0.11188	-6.5142E-05	0.41408	0.00024111	582.2774643118524	50.867	0.8372	50.936	50.666	51.503	0.069874					92	32	5	0	0	0	3.7807000000000004E-25	3	10448	10404;10448;10491		232.37	173.69	1	1793600			17033	2698	11270	11384	22945;22946;22947	22946					-0.03404633050490702
QYVLGATNFF	10	Unmodified	_QYVLGATNFF_					0	0	0			REV__ENSG00000101425|ENST00000642449|BPI	REV__ENSG00000101425|ENST00000642449|BPI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.2923583984375	2	580.292756	1158.57096	0.60589	0.00035159	-0.23509	-0.00013642	0.3708	0.00021517	580.2925000677201	63.859	1.0886	63.93	63.706	64.794	0.071018					92	38	5	0	0	0	0.39662	1	14572	14572		12.241	1.4167	1	1591900	+		17034	8427	11271	11385	22948	22948					-0.001982743853204738
QYVSAFSKL	9	Unmodified	_QYVSAFSKL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2719116210938	2	521.782025	1041.5495	0.17932	9.3569E-05	0.22472	0.00011726	0.40405	0.00021083	521.7820041380207	52.116	0.46236	52.116	51.961	52.424	0					34	15	3	0	0	0	0.092521	1	10958	10958		49.527	18.259	1	686250			17035	4075	11272	11386	22949	22949					0.030383405859993218
QYVSAFSKL	9	Unmodified	_QYVSAFSKL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2718505859375	2	521.782025	1041.5495	0.19918	0.00010393	0.28884	0.00015071	0.48801	0.00025464	521.7820419431007	52.083	0.42012	52.15	51.938	52.358	0.067173					42	15	4	0	0	0	0.16724	1	10804	10804		27.223	10.281	1	579390			17036	4075	11272	11386	22950	22950					0.030383405859993218
QYVVDLTSF	9	Unmodified	_QYVVDLTSF_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.2720336914062	2	536.27149	1070.52843	0.32429	0.00017391	0.76269	0.00040901	1.087	0.00058291	536.2718539822959	78.906	0.5486	78.906	78.705	79.254	0					43	18	3	0	0	0	1.7199E-05	1	19126	19126		142.08	53.126	1	644770			17037	2746	11273	11387	22951	22951					-0.004016695135305781
QYVVDLTSF	9	Unmodified	_QYVVDLTSF_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.2718505859375	2	536.27149	1070.52843	0.55199	0.00029602	0.37587	0.00020157	0.92787	0.00049759	536.2717066407055	78.893	0.48843	78.924	78.738	79.226	0.030159					47	16	4	0	0	0	1.7199E-05	3	18954	18920;18954;19003		142.08	53.126	1	779840			17038	2746	11273	11387	22952;22953;22954	22953					-0.004016695135305781
QYVYWLHML	9	Oxidation (M)	_QYVYWLHM(Oxidation (M))L_		QYVYWLHM(1)L		QYVYWLHM(130)L	0	0	1		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8103637695312	2	634.810259	1267.60597	0.30463	0.00019339	0.079084	5.0203E-05	0.38372	0.00024359	634.8102790519957	68.459	1.0054	68.459	68.127	69.132	0					104	36	4	0	0	0	0.00065346	3	15933	15881;15933;15986		129.2	87.361	1	781250			17039	2757	11274	11388	22955;22956;22957	22956		177			-0.01713354848993731
QYVYWLHML	9	Oxidation (M)	_QYVYWLHM(Oxidation (M))L_		QYVYWLHM(1)L		QYVYWLHM(130)L	0	0	1		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.3118896484375	2	634.810259	1267.60597	0.37772	0.00023978	0.20266	0.00012865	0.58038	0.00036843	634.8104743734206	70.496	2.4246	70.496	69.496	71.92	0					187	86	4	0	0	0	0.00065346	6	16511	16467;16511;16607;16650;16698;16758		129.2	109.84	1	1151400			17040	2757	11274	11388	22958;22959;22960;22961;22962;22963	22959		177			-0.01713354848993731
QYVYWLHML	9	Oxidation (M)	_QYVYWLHM(Oxidation (M))L_		QYVYWLHM(1)L		QYVYWLHM(150)L	0	0	1		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8109130859375	2	634.810259	1267.60597	0.37765	0.00023973	-0.21772	-0.00013821	0.15993	0.00010153	634.810066057112	68.24	1.0364	68.303	68.073	69.109	0.063507					101	39	4	0	0	0	5.3776E-06	3	15711	15711;15755;15804		153.26	117.14	1	861300			17041	2757	11274	11388	22964;22965;22966	22964		177			-0.01713354848993731
QYVYWLHML	9	Oxidation (M)	_QYVYWLHM(Oxidation (M))L_		QYVYWLHM(1)L		QYVYWLHM(110)L	0	0	1		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8103637695312	2	634.810259	1267.60597	0.50397	0.00031993	-0.04575	-2.9043E-05	0.45822	0.00029088	634.8101954842482	70.391	1.6905	70.452	70.046	71.737	0.060562					137	65	4	0	0	0	0.0034574	4	16431	16291;16431;16477;16572		106.85	84.109	1	948870			17042	2757	11274	11388	22967;22968;22969;22970	22968		177			-0.01713354848993731
QYVYWLHML	9	Unmodified	_QYVYWLHML_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8119506835938	2	626.812802	1251.61105	0.088752	5.5631E-05	0.018694	1.1717E-05	0.10745	6.7348E-05	626.8128517643224	78.458	1.278	78.458	78.205	79.483	0					67	43	3	0	0	0	0.02242	2	18982	18982;19037		56.541	37.179	1	383830			17043	2757	11274	11389	22971;22972	22971					-0.004690509863849002
QYVYWLHML	9	Unmodified	_QYVYWLHML_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8125	2	626.812802	1251.61105	0.43723	0.00027406	-0.48895	-0.00030648	-0.051714	-3.2415E-05	626.8126474631304	78.451	0.81752	78.481	78.2	79.018	0.030151					51	27	3	0	0	0	0.012597	2	18809	18809;18858		63.563	40.827	1	526760			17044	2757	11274	11389	22973;22974	22973					-0.004690509863849002
QYWKCLSRK	9	Unmodified	_QYWKCLSRK_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3214111328125	2	606.321325	1210.6281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.853	1	31.927	31.427	32.427	0.073782								0	0	0	0.29233	1	4725	4725		0.6015	0	1		+		17045	10954	11275	11390	22975	22975					0.031208696194198637
QYWLWWIF	8	Unmodified	_QYWLWWIF_					0	0	0		ENSG00000102471|ENST00000218652|NDFIP2	ENSG00000102471|ENST00000218652|NDFIP2	ENSG00000102471|ENST00000218652|NDFIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3126220703125	2	621.310752	1240.60695	0.11576	7.1924E-05	3.8198	0.0023733	3.9356	0.0024452	621.3134944370919	94.226	0.46536	94.265	94.079	94.544	0.038086					43	14	4	0	0	0	0.49441	1	23683	23683		13.508	3.9639	1	255320			17046	1317	11276	11391	22976	22976					-0.003727724177906566
QYYLQQCF	8	Unmodified	_QYYLQQCF_					0	0	0		ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7451171875	2	546.744585	1091.47462	0.41577	0.00022732	2.0672	0.0011302	2.483	0.0013576	546.744625634954	91.986	0.48058	92.023	91.774	92.254	0.036522					37	14	3	0	0	0	0.52924	1	22961	22961		8.5933	1.8701	1	194270			17047	6954	11277	11392	22977	22977					-0.06746165216895861
QYYSYFTSH	9	Unmodified	_QYYSYFTSH_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8238525390625	2	598.256371	1194.49819	0.050875	3.0436E-05	3.1516	0.0018855	3.2025	0.0019159	598.2580952041757	72.11	0.47975	72.166	71.95	72.43	0.055939					22	14	2	0	0	0	0.25281	1	16864	16864		6.7232	0.51738	1	112430			17048	1738	11278	11393	22978	22978					-0.09128028178702152
RAARYYYYW	9	Unmodified	_RAARYYYYW_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.8805847167969	3	437.88049	1310.61964	0.38685	0.00016939	-0.61799	-0.00027061	-0.23115	-0.00010121	438.214461703685	47.733	1.0137	47.813	47.593	48.607	0.080032					76	36	3	0	0	0	0.28919	1	9505	9505		8.1555	1.9637	1	172000			17049	2992	11279	11394	22979	22979					-0.023243610255349267
RAATPAWFSY	10	Unmodified	_RAATPAWFSY_					0	0	0		SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|17|2|sense	SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|17|2|sense	SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|17|2|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2905883789062	2	585.290548	1168.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.552	1	29.631	29.131	30.131	0.078287								0	0	0	0.33892	1	4043	4043		1.4819	0.79152	1				17050	13412	11280	11395	22980	22980					-0.010997388081932513
RAAWMPAC	8	Unmodified	_RAAWMPAC_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENST00000498057.1_1_3:48680363-48680537:-|nuORF;ENST00000461362.5_1_3:48675640-48681145:-|nuORF	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2101135253906	2	453.209658	904.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.057	1	96.057	95.557	96.557	0								0	0	0	0.38822	1	24347	24347		0.79363	0	1				17051	394	11281	11396	22981	22981					-0.0512632236650461
RACRPCFDHH	10	Unmodified	_RACRPCFDHH_					0	0	0			REV__ENST00000444126.5_1_6:30262225-30262381:-|nuORF	REV__ENST00000444126.5_1_6:30262225-30262381:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.7732543945312	2	621.274383	1240.53421	0.018204	1.131E-05	-0.13394	-8.3214E-05	-0.11574	-7.1905E-05	621.2737809581423	115.61	0.048363	115.62	115.6	115.65	0.013092					6	5	2	0	0	0	0.31857	1	29384	29384		0	0	1	9942.6	+		17052	11892	11282	11397	22982	22982					-0.0764317275452413
RADESTYVL	9	Unmodified	_RADESTYVL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.263916015625	2	527.264196	1052.51384	-0.46224	-0.00024372	0.29873	0.00015751	-0.16351	-8.6212E-05	527.2643350287155	42.292	1.2392	42.292	42.057	43.296	0					118	42	4	0	0	0	0.088609	2	8003	7954;8003		34.932	7.3033	1	1722800			17053	1892	11283	11398	22983;22984	22984					-0.01031741661677188
RADESTYVL	9	Unmodified	_RADESTYVL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2640991210938	2	527.264196	1052.51384	-0.33254	-0.00017534	0.35142	0.00018529	0.018872	9.9505E-06	527.2643673160255	42.198	1.0439	42.288	42.072	43.116	0.089764					99	39	4	0	0	0	0.088609	2	7842	7798;7842		34.932	7.3033	1	1400200			17054	1892	11283	11398	22985;22986	22986					-0.01031741661677188
RADQFEYVM	9	Oxidation (M)	_RADQFEYVM(Oxidation (M))_		RADQFEYVM(1)		RADQFEYVM(68)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.763427734375	2	587.763506	1173.51246	-0.20789	-0.00012219	0.055644	3.2705E-05	-0.15224	-8.9482E-05	587.7635489034164	42.434	1.4992	42.434	42.22	43.719	0					126	52	4	0	0	0	0.0097877	1	8040	8040		67.838	38.757	1	1079100			17055	3956	11284	11399	22987	22987		244			-0.06735699022101471
RADQFEYVM	9	Oxidation (M)	_RADQFEYVM(Oxidation (M))_		RADQFEYVM(1)		RADQFEYVM(48)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.763427734375	2	587.763506	1173.51246	0.0049988	2.9381E-06	-0.25149	-0.00014782	-0.24649	-0.00014488	587.7633057881927	44.575	2.9822	44.575	43.467	46.449	0					255	105	4	0	0	0	0.034936	1	8639	8639		47.594	24.858	1	757870			17056	3956	11284	11399	22988	22988		244			-0.06735699022101471
RADQFEYVM	9	Oxidation (M)	_RADQFEYVM(Oxidation (M))_		RADQFEYVM(1)		RADQFEYVM(48)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.763427734375	2	587.763506	1173.51246	0.056341	3.3115E-05	0.02329	1.3689E-05	0.079631	4.6804E-05	587.7634930448824	42.351	1.3209	42.44	42.161	43.482	0.089764					115	48	4	0	0	0	0.034744	2	7896	7846;7896		47.732	30.619	1	947140			17057	3956	11284	11399	22989;22990	22990		244			-0.06735699022101471
RADQFEYVM	9	Oxidation (M)	_RADQFEYVM(Oxidation (M))_		RADQFEYVM(1)		RADQFEYVM(51)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.763427734375	2	587.763506	1173.51246	0.31061	0.00018256	-0.36169	-0.00021259	-0.051078	-3.0022E-05	587.7632843343462	44.432	1.9359	44.52	44.002	45.938	0.087864					182	71	4	0	0	0	0.029591	1	8514	8514		51.415	34.302	1	563860			17058	3956	11284	11399	22991	22991		244			-0.06735699022101471
RADRVPIS	8	Unmodified	_RADRVPIS_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;ENST00000504526.1_1_4:184580477-184587420:+|nuORF	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2642822265625	2	457.264333	912.514114	0.43652	0.0001996	-0.24791	-0.00011336	0.18861	8.6244E-05	457.2641145547303	76.292	2.7408	76.292	76.041	78.782	0					250	108	3	0	0	0	0.53557	1	18658	18658		4.3292	0	1	989850			17059	4298	11285	11400	22992	22992					0.054357228488470355
RAEGHPDSLK	10	Unmodified	_RAEGHPDSLK_					0	0	0		ENSG00000143217|ENST00000368012|NECTIN4	ENSG00000143217|ENST00000368012|NECTIN4	ENSG00000143217|ENST00000368012|NECTIN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2880249023438	2	555.288537	1108.56252	0.25185	0.00013985	-0.39442	-0.00021902	-0.14258	-7.9171E-05	555.2882734370602	23.473	0.31669	23.572	23.469	23.785	0.099739					42	29	3	0	0	0	0.46208	1	2285	2285		2.4985	1.0166	1	33981			17060	3141	11286	11401	22993	22993					0.012581716980776037
RAFFTYKW	8	Unmodified	_RAFFTYKW_					0	0	0		ENST00000265069.12_1_5:32354895-32354985:-|nuORF	ENST00000265069.12_1_5:32354895-32354985:-|nuORF	ENST00000265069.12_1_5:32354895-32354985:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2748413085938	2	559.792727	1117.5709	0.084869	4.7509E-05	1.0824	0.00060591	1.1673	0.00065342	559.7934336121899	31.974	0.26761	32.047	31.979	32.246	0.073784					18	11	2	0	0	0	0.3576	1	4775	4775		0.69038	0	1	20803			17061	5894	11287	11402	22994	22994					0.016817704053664784
RAFLELKLLY	10	Unmodified	_RAFLELKLLY_					0	0	0		ENST00000199764.6_1_19:42259386-42260556:+|nuORF	ENST00000199764.6_1_19:42259386-42260556:+|nuORF	ENST00000199764.6_1_19:42259386-42260556:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.0015869140625	2	633.384448	1264.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.24	1	45.327	44.827	45.827	0.08754								0	0	0	0.33916	1	8747	8747		1.1933	0	1				17062	5786	11288	11403	22995	22995					0.13255699396381715
RAGHNALI	8	Unmodified	_RAGHNALI_					0	0	0			REV__ENST00000305784.6_1_2:242626263-242626392:-|nuORF	REV__ENST00000305784.6_1_2:242626263-242626392:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.1912536621094	2	426.245944	850.477334	0.74323	0.0003168	-0.59741	-0.00025464	0.14582	6.2155E-05	426.2455976955162	85.317	0.51205	85.317	85.042	85.554	0					32	20	2	0	0	0	0.3576	1	21121	21121		2.5775	0.27475	1	200750	+		17063	11356	11289	11404	22996	22996					0.046114710229517186
RAGNCFLETHD	11	Unmodified	_RAGNCFLETHD_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.7830810546875	2	631.782761	1261.55097	0.13251	8.3718E-05	0.19534	0.00012341	0.32785	0.00020713	631.7829401906346	90.482	1.0646	90.482	90.118	91.183	0					131	40	4	0	0	0	0.38315	2	22593	22593;22684		8.1555	1.0538	1	1761300			17064	3103	11290	11405	22997;22998	22997					-0.06934393387564342
RAGNCFLETHD	11	Unmodified	_RAGNCFLETHD_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.7833862304688	2	631.782761	1261.55097	0.012511	7.9045E-06	0.16474	0.00010408	0.17725	0.00011198	631.7830428988705	90.491	1.2203	90.525	90.087	91.307	0.034065					148	48	5	0	0	0	0.30979	1	22425	22425		11.495	11.495	1	1480500			17065	3103	11290	11405	22999	22999					-0.06934393387564342
RAGPRPGP	8	Unmodified	_RAGPRPGP_					0	0	0		nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2	REV__ENST00000574741.1_1_17:45159638-45177554:-|nuORF	REV__ENST00000574741.1_1_17:45159638-45177554:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2337951660156	2	404.232836	806.45112	0.62433	0.00025237	0.18192	7.3538E-05	0.80625	0.00032591	404.23296724344436	82.934	0.778	82.934	82.563	83.341	0					36	26	2	0	0	0	0.53858	1	20341	20341		2.3027	0	1	171740			17066	5118	11291	11406	23000	23000					0.040152018514731935
RAGPRPGP	8	Unmodified	_RAGPRPGP_					0	0	0		nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2	REV__ENST00000574741.1_1_17:45159638-45177554:-|nuORF	REV__ENST00000574741.1_1_17:45159638-45177554:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.23291015625	2	404.232836	806.45112	0.096857	3.9153E-05	0.64679	0.00026145	0.74364	0.00030061	404.23312176370956	82.942	0.87963	82.964	82.454	83.333	0.021744					42	30	2	0	0	0	0.53858	1	20213	20213		2.3027	0	1	198850			17067	5118	11291	11406	23001	23001					0.040152018514731935
RAGRRKRLL	9	Unmodified	_RAGRRKRLL_					0	0	0		ENST00000348165.9_1_7:156931958-156961760:+|nuORF	ENST00000348165.9_1_7:156931958-156961760:+|nuORF	ENST00000348165.9_1_7:156931958-156961760:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3888549804688	2	563.375615	1124.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.12	1	111.14	110.64	111.64	0.015678								0	0	0	0.28631	1	28338	28338		1.8442	0.36234	1				17068	6104	11292	11407	23002	23002					0.1792984170474483
RAKAWETVK	9	Unmodified	_RAKAWETVK_					0	0	0		ENST00000378097.5_1_1:6160202-6160340:+|nuORF	ENST00000378097.5_1_1:6160202-6160340:+|nuORF	ENST00000378097.5_1_1:6160202-6160340:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8014526367188	2	544.81419	1087.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.431	1	19.431	18.931	19.931	0								0	0	0	0.28807	1	1358	1358		1.4819	0	1				17069	6262	11293	11408	23003	23003					0.07352540462784418
RAKGERLI	8	Unmodified	_RAKGERLI_					0	0	0			REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF	REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7958068847656	2	471.795801	941.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.914	1	90.95	90.45	91.45	0.035446								0	0	0	0.38822	1	22624	22624		2.5775	0	1		+		17070	11747	11294	11409	23004	23004					0.10392288636899139
RAPGPGRP	8	Unmodified	_RAPGPGRP_					0	0	0		ENST00000371942.7_1_9:136282908-136283130:-|nuORF	ENST00000371942.7_1_9:136282908-136283130:-|nuORF	ENST00000371942.7_1_9:136282908-136283130:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2330627441406	2	404.232836	806.45112	1.0304	0.0004165	-0.30673	-0.00012399	0.72363	0.00029251	404.2326342893196	80.269	1.3582	80.269	79.815	81.173	0					101	46	4	0	0	0	0.53858	1	19481	19481		2.3027	0	1	3560600			17071	6212	11295	11410	23005	23005					0.04015201851461825
RAQAVHHF	8	Unmodified	_RAQAVHHF_					0	0	0			REV__nc|ENSG00000139971|Q86TY3-2|ARMH4	REV__nc|ENSG00000139971|Q86TY3-2|ARMH4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2561340332031	2	483.256843	964.499132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.661	1	37.661	37.161	38.161	0								0	0	0	0.38822	1	6588	6588		0.69038	0	1		+		17072	11431	11296	11411	23006	23006					0.015462757715113185
RAQGEYLT	8	Unmodified	_RAQGEYLT_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-2|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.2402038574219	2	469.240524	936.466495	-0.28503	-0.00013375	-0.11551	-5.4202E-05	-0.40054	-0.00018795	469.24042309957	32.836	1.2484	32.91	32.674	33.923	0.073975					115	53	4	0	0	0	0.53858	1	5101	5101		2.3027	0	1	668820			17073	248	11297	11412	23007	23007					-0.004279761420207251
RAQNRRLLP	9	Unmodified	_RAQNRRLLP_					0	0	0		nc|ENSG00000167103|Q5T9C9-2|PIP5KL1;ENST00000464759.5_1_9:130684128-130689655:-|nuORF;ENSG00000167103|ENST00000388747|PIP5KL1	nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.6773071289062	2	562.343981	1122.67341	0.34512	0.00019408	-0.9787	-0.00055037	-0.63358	-0.00035629	562.3433473406388	83.403	0.81473	83.425	83.1	83.915	0.021744					49	28	2	0	0	0	0.34646	1	20475	20475		0.6015	0	1	196870			17074	4199	11298	11413	23008	23008					0.11697856196838075
RAQNRRLLP	9	Unmodified	_RAQNRRLLP_					0	0	0		nc|ENSG00000167103|Q5T9C9-2|PIP5KL1;ENST00000464759.5_1_9:130684128-130689655:-|nuORF;ENSG00000167103|ENST00000388747|PIP5KL1	nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.343981	1122.67341	0.53717	0.00030208	-1.1564	-0.00065028	-0.6192	-0.00034821	562.3432903611703	83.548	0.43003	83.548	83.228	83.658	0	0.061654	-0.00013656	NaN	0.6015	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86722			17075	4199	11298	11413							0.11697856196838075
RAQNRRLLP	9	Unmodified	_RAQNRRLLP_					0	0	0		nc|ENSG00000167103|Q5T9C9-2|PIP5KL1;ENST00000464759.5_1_9:130684128-130689655:-|nuORF;ENSG00000167103|ENST00000388747|PIP5KL1	nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	562.343981	1122.67341	0.34512	0.00019408	-0.9787	-0.00055037	-0.63358	-0.00035629	562.3433473406388	83.403	0.81473	83.425	83.1	83.915	0.021744	-0.061654	6.327E-05	NaN	0.6015	49	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196870			17076	4199	11298	11413							0.11697856196838075
RARDVEIV	8	Unmodified	_RARDVEIV_					0	0	0			REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2773742675781	2	479.277441	956.540328	0.16345	7.8337E-05	0.11031	5.2868E-05	0.27376	0.00013121	479.27738708472776	78.766	3.0918	78.766	77.899	80.99	0					356	107	4	0	0	0	0.53557	1	19466	19466		4.3292	0	1	1643400	+		17077	13046	11299	11414	23009	23009					0.060319920203255606
RARDVEIV	8	Unmodified	_RARDVEIV_					0	0	0			REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2773742675781	2	479.277441	956.540328	0.098532	4.7224E-05	0.19499	9.3454E-05	0.29352	0.00014068	479.27740589104303	78.777	3.1544	78.807	77.792	80.946	0.030159					352	111	4	0	0	0	0.53557	1	19508	19508		4.3292	0	1	1861400	+		17078	13046	11299	11414	23010	23010					0.060319920203255606
RARSWWIR	8	Unmodified	_RARSWWIR_					0	0	0		ENST00000587361.1_1_19:38800040-38800091:-|nuORF	ENST00000587361.1_1_19:38800040-38800091:-|nuORF	ENST00000587361.1_1_19:38800040-38800091:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2342529296875	2	565.820141	1129.62573	-0.22091	-0.000125	-1.2785	-0.00072343	-1.4995	-0.00084843	565.8196059320996	44.468	0.23358	44.468	44.298	44.531	0					13	7	2	0	0	0	0.3576	1	8650	8650		2.3027	0	1	42641			17079	7243	11300	11415	23011	23011					0.06610201996636533
RATPHWSL	8	Unmodified	_RATPHWSL_					0	0	0			REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.25885009765625	2	484.259051	966.503549	0.3522	0.00017056	-1.2759	-0.00061785	-0.92366	-0.00044729	484.2582590811857	65.324	0.52507	65.324	64.973	65.498	0					26	18	2	0	0	0	0.53557	1	15030	15030		4.3292	0.38484	1	118470	+		17080	10121	11301	11416	23012	23012					0.018957401944248886
RATPHWSL	8	Unmodified	_RATPHWSL_					0	0	0			REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.259051	966.503549	0.3522	0.00017056	-1.2759	-0.00061785	-0.92366	-0.00044729	484.2582590811857	65.324	0.52507	65.324	64.973	65.498	0	0.047031	4.4233E-05	NaN	4.3292	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118470	+		17081	10121	11301	11416							0.018957401944248886
RATPHWSL	8	Unmodified	_RATPHWSL_					0	0	0			REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	484.259051	966.503549	0.18832	9.1195E-05	-1.3671	-0.00066203	-1.1788	-0.00057083	484.2583685769922	65.161	0.53703	65.23	65.035	65.572	0.068916	-0.047031	-4.4127E-05	NaN	4.3292	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161650	+		17082	10121	11301	11416							0.018957401944248886
RAVKKKKK	8	Unmodified	_RAVKKKKK_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;ENST00000513898.5_1_4:2696860-2717089:+|nuORF;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.35302734375	2	493.353286	984.692019	0.33558	0.00016556	0.3069	0.00015141	0.64248	0.00031697	493.3533295277234	112.19	1.0199	112.2	111.86	112.88	0.014595					318	118	4	0	0	0	0.54097	1	28720	28720		0.69038	0	1	10373000			17083	2291	11302	11417	23013	23013					0.1990601783869579
RAVTRRERRL	10	Unmodified	_RAVTRRERRL_					0	0	0		nc|ENSG00000128563|Q9H875-2|PRKRIP1	nc|ENSG00000128563|Q9H875-2|PRKRIP1	nc|ENSG00000128563|Q9H875-2|PRKRIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.273193359375	3	438.272604	1311.79598	0.39627	0.00017367	0.60181	0.00026376	0.99808	0.00043743	438.27275619234797	102.75	0.70139	102.75	102.46	103.16	0					106	45	3	0	0	0	0.46608	2	26347	26347;26387		1.7423	0	1	452880			17084	7496	11303	11418	23014;23015	23014					0.15255692928258213
RAVTRRERRL	10	Unmodified	_RAVTRRERRL_					0	0	0		nc|ENSG00000128563|Q9H875-2|PRKRIP1	nc|ENSG00000128563|Q9H875-2|PRKRIP1	nc|ENSG00000128563|Q9H875-2|PRKRIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.27276611328125	3	438.272604	1311.79598	0.27859	0.0001221	0.69609	0.00030508	0.97468	0.00042718	438.2727251786709	102.66	0.90846	102.7	102.31	103.21	0.040916					162	71	4	0	0	0	0.46608	1	26207	26207		1.7423	0	1	405370			17085	7496	11303	11418	23016	23016					0.15255692928258213
RAYAMEIND	9	Unmodified	_RAYAMEIND_					0	0	0			REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7632446289062	2	541.750398	1081.48624	0.02413	1.3072E-05	0.23924	0.00012961	0.26337	0.00014268	542.2521352319268	31.168	0.29188	31.242	31.129	31.421	0.073782					19	14	2	0	0	0	0.33849	1	4514	4514		1.6526	0.17072	1	16208	+		17086	8461	11304	11419	23017	23017					-0.051239681935385306
RAYHKIAF	8	Unmodified	_RAYHKIAF_					0	0	0		ENST00000536441.6_2_11:94900525-94900600:-|nuORF	ENST00000536441.6_2_11:94900525-94900600:-|nuORF	ENST00000536441.6_2_11:94900525-94900600:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.814453125	2	503.285069	1004.55558	0.44428	0.0002236	-2.3588	-0.0011872	-1.9146	-0.00096357	503.28438330369363	92.012	0.26345	92.012	91.927	92.19	0					14	9	2	0	0	0	0.35759	1	23140	23140		9.3474	0	1	46311			17087	7045	11305	11420	23018	23018					0.053489036081600716
RAYRWELH	8	Unmodified	_RAYRWELH_					0	0	0		ENST00000509297.5_1_5:135469115-135469187:+|nuORF	ENST00000509297.5_1_5:135469115-135469187:+|nuORF	ENST00000509297.5_1_5:135469115-135469187:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7669677734375	2	565.796332	1129.57811	-0.033192	-1.878E-05	-0.5408	-0.00030598	-0.57399	-0.00032476	565.7956825301715	58.443	0.24879	58.443	58.293	58.542	0					12	7	2	0	0	0	0.3576	1	12840	12840		8.5933	0	1	44607			17088	6903	11306	11421	23019	23019					0.018505030057895056
RAYSDFKML	9	Unmodified	_RAYSDFKML_					0	0	0			REV__ENST00000512000.1_1_5:176794318-176794990:+|nuORF	REV__ENST00000512000.1_1_5:176794318-176794990:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7689819335938	2	565.786784	1129.55902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.088	1	91.088	90.588	91.588	0								0	0	0	0.19239	1	22835	22835		19.257	2.3147	1		+		17089	10164	11307	11422	23020	23020					-0.0005821440013278334
RCCMPKCK	8	Unmodified	_RCCMPKCK_					0	0	0		ENST00000490869.1_1_X:47063082-47065999:+|nuORF	ENST00000490869.1_1_X:47063082-47065999:+|nuORF	ENST00000490869.1_1_X:47063082-47065999:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7181396484375	2	484.718478	967.422404	-0.18278	-8.8597E-05	0.03414	1.6548E-05	-0.14864	-7.2048E-05	484.7183898705198	90.877	1.1394	90.913	90.504	91.644	0.035446					62	42	2	0	0	0	0.3576	1	22792	22792		0	0	1	313300			17090	6807	11308	11423	23021	23021					-0.06261066427498463
RCCSGLLFGR	10	Unmodified	_RCCSGLLFGR_					0	0	0			REV__nc|ENSG00000152620|Q4G0N4-2|NADK2	REV__nc|ENSG00000152620|Q4G0N4-2|NADK2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2984619140625	2	556.278603	1110.54265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.976	1	51.976	51.476	52.476	0								0	0	0	0.26818	1	10914	10914		21.537	2.098	1		+		17091	9679	11309	11424	23022	23022					-0.008196188378860825
RCCSSWASS	9	Unmodified	_RCCSSWASS_					0	0	0			REV__ENST00000380739.5_1_6:2836094-2836181:-|nuORF	REV__ENST00000380739.5_1_6:2836094-2836181:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.1686096191406	2	493.694569	985.374585	0.0085066	4.1997E-06	0.90045	0.00044455	0.90896	0.00044875	493.6949668461516	32.139	0.96492	32.213	31.854	32.819	0.07378					69	48	2	0	0	0	0.259	1	4991	4991		1.6526	0.17072	1	32080	+		17092	11668	11310	11425	23023	23023					-0.1186872582234173
RCFDRVTFF	9	Unmodified	_RCFDRVTFF_					0	0	0			REV__ENST00000478436.1_1_3:145795570-145803239:-|nuORF	REV__ENST00000478436.1_1_3:145795570-145803239:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.31591796875	2	595.792401	1189.57025	-0.39687	-0.00023645	0.93433	0.00055667	0.53745	0.00032021	595.7929032029842	42.735	0.49183	42.735	42.599	43.091	0					22	16	2	0	0	0	0.259	1	8137	8137		1.6526	0.17072	1	40302	+		17093	12067	11311	11426	23024	23024					-0.01695392306010035
RCFFSRRSGS	10	Unmodified	_RCFFSRRSGS_					0	0	0			REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2991333007812	2	601.796006	1201.57746	0.50818	0.00030582	-0.69987	-0.00042118	-0.1917	-0.00011536	601.7956224873309	62.628	1.302	62.701	61.797	63.099	0.072701					147	52	6	0	0	0	0.44938	1	13786	13786		4.897	0.56777	1	3622400	+		17094	7782	11312	11427	23025	23025					-0.015266597055642706
RCHMAMTTL	9	Unmodified	_RCHMAMTTL_					0	0	0		ENST00000368761.9_1_6:111901553-111912487:-|nuORF	ENST00000368761.9_1_6:111901553-111912487:-|nuORF	ENST00000368761.9_1_6:111901553-111912487:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2565307617188	2	532.245914	1062.47728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.569	1	42.659	42.159	43.159	0.089764								0	0	0	0.27782	1	7941	7941		3.5965	0	1				17095	6186	11313	11428	23026	23026					-0.051463563552260894
RCIHSLEERC	10	Unmodified	_RCIHSLEERC_					0	0	0			REV__ENST00000554096.2_1_14:91709294-91710286:+|nuORF	REV__ENST00000554096.2_1_14:91709294-91710286:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.2969970703125	2	623.294982	1244.57541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.17	1	115.18	114.68	115.68	0.013092								0	0	0	0.33905	1	29285	29285		1.3295	0.72803	1		+		17096	12451	11314	11429	23027	23027					-0.03709456505680464
RCLPVPPKYE	10	Unmodified	_RCLPVPPKYE_					0	0	0		ENST00000268296.8_1_16:31373430-31374502:+|nuORF	ENST00000268296.8_1_16:31373430-31374502:+|nuORF	ENST00000268296.8_1_16:31373430-31374502:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8242797851562	2	601.323534	1200.63251	0.37945	0.00022817	-0.73808	-0.00044382	-0.35863	-0.00021565	601.3232697931244	107.6	0.20862	107.62	107.43	107.63	0.022232					38	23	3	0	0	0	0.46827	1	27525	27525		1.3295	0	1	202990			17097	5909	11315	11430	23028	23028					0.04022334042338116
RCMSFCLAI	9	Unmodified	_RCMSFCLAI_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-3|SPG11	REV__nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.24609375	2	522.245383	1042.47621	0.0060455	3.1572E-06	1.2708	0.00066368	1.2769	0.00066683	522.24579201771	72.719	1.0555	72.719	72.228	73.284	0					57	36	2	0	0	0	0.25174	1	17296	17296		7.2892	0	1	138470	+		17098	8497	11316	11431	23029	23029					-0.04332570724136531
RCPCVAPVW	9	Unmodified	_RCPCVAPVW_					0	0	0			REV__ENST00000449296.6_1_7:966765-966822:-|nuORF	REV__ENST00000449296.6_1_7:966765-966822:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7515258789062	2	515.75169	1029.48883	0.14829	7.648E-05	-0.73872	-0.000381	-0.59043	-0.00030452	515.7517306083635	35.152	0.41366	35.152	34.975	35.389	0					36	14	4	0	0	0	0.3182	1	5831	5831		4.3292	0.38484	1	70917	+		17099	11917	11317	11432	23030	23030					-0.024737912695854902
RCREAFATKGE	11	Unmodified	_RCREAFATKGE_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3123779296875	2	634.314229	1266.6139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115	1	115.01	114.51	115.51	0.013092								0	0	0	0.33908	1	29243	29243		1.0715	0.5467	1				17100	5585	11318	11433	23031	23031					-0.008738275995256117
RCYSDFCVL	9	Unmodified	_RCYSDFCVL_					0	0	0		ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.246826171875	2	553.243895	1104.47324	0.35556	0.00019671	3.1812	0.00176	3.5368	0.0019567	553.2459668927147	39.315	0.39201	39.404	39.27	39.662	0.088562					27	16	3	0	0	0	0.33704	1	6951	6951		1.8442	0.51471	1	71400			17101	7266	11319	11434	23032	23032					-0.07482122577312111
RDDLLSDYF	9	Unmodified	_RDDLLSDYF_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2722778320312	2	572.269478	1142.5244	0.79903	0.00045726	3.5532	0.0020334	4.3522	0.0024906	572.2713566955613	80.356	0.39639	80.356	80.228	80.625	0					25	13	2	0	0	0	0.18364	1	19612	19612		20.454	1.0146	1	257450			17102	456	11320	11435	23033	23033					-0.04115759007231645
RDDLLSDYF	9	Unmodified	_RDDLLSDYF_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.269478	1142.5244	0.66399	0.00037998	3.5827	0.0020503	4.2467	0.0024302	572.2713596481535	80.382	0.4641	80.405	80.188	80.652	0.023605	0.024763	1.5817E-05	NaN	20.454	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180630			17103	456	11320	11435							-0.04115759007231645
RDEPEKVV	8	Unmodified	_RDEPEKVV_					0	0	0		ENSG00000204815|ENST00000377540|ODAD4	ENSG00000204815|ENST00000377540|ODAD4	ENSG00000204815|ENST00000377540|ODAD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.261474609375	2	486.261456	970.50836	0.13292	6.4632E-05	0.17337	8.4304E-05	0.30629	0.00014894	486.26145742372245	38.09	0.39314	38.175	38.015	38.408	0.084988					29	14	3	0	0	0	0.3576	1	6599	6599		4.3292	4.3292	1	64332			17104	5495	11321	11436	23034	23034					0.02192579546522211
RDEPTASGY	9	Unmodified	_RDEPTASGY_					0	0	0			REV__nc|ENSG00000108823|Q16586-2|SGCA	REV__nc|ENSG00000108823|Q16586-2|SGCA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.22515869140625	2	498.225071	994.435589	-0.035635	-1.7754E-05	-0.4573	-0.00022784	-0.49294	-0.00024559	498.224786165908	26.747	0.30627	26.834	26.722	27.029	0.0867					35	21	2	0	0	0	0.33704	1	3222	3222		1.8442	1.0506	1	23030	+		17105	8626	11322	11437	23035	23035					-0.0618517424690026
RDFADWYL	8	Unmodified	_RDFADWYL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2552490234375	2	543.256174	1084.49779	-0.32676	-0.00017751	-0.55569	-0.00030188	-0.88245	-0.0004794	543.2558855033361	18.332	0.85762	18.332	18.233	19.091	0					143	99	3	0	0	0	0.54097	1	1134	1134		0.69038	0	1	55214			17106	4948	11323	11438	23036	23036					-0.041074031079233464
RDFKYLILKN	10	Unmodified	_RDFKYLILKN_					0	0	0			REV__nc|ENSG00000081985|Q99665-2|IL12RB2	REV__nc|ENSG00000081985|Q99665-2|IL12RB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2140197753906	3	437.259079	1308.75541	0.25543	0.00011169	-3.4771	-0.0015204	-3.2217	-0.0014087	437.25776337261067	104.8	0.24733	104.8	104.67	104.92	0					34	24	2	0	0	0	0.31853	1	26952	26952		0.62683	0.17231	1	55976	+		17107	8244	11324	11439	23037	23037					0.11337913765282792
RDGFIDLMEL	10	Unmodified	_RDGFIDLMEL_					0	0	0		nc|ENSG00000115468|Q9BUP0-2|EFHD1;ENSG00000115468|ENST00000264059|EFHD1;ENSG00000142634|ENST00000375980|EFHD2	nc|ENSG00000115468|Q9BUP0-2|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5273742675781	3	403.537513	1207.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.811	1	42.811	42.311	43.311	0								0	0	0	0.33905	1	8141	8141		1.5923	1.2256	1				17108	1906	11325	11440	23038	23038					-0.0047826643683492875
RDGGSVFGARS	11	Unmodified	_RDGGSVFGARS_					0	0	0			REV__ENSG00000284024|ENST00000640019|MSANTD7	REV__ENSG00000284024|ENST00000640019|MSANTD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7354736328125	2	554.778336	1107.54212	-0.19607	-0.00010878	0.29737	0.00016498	0.1013	5.62E-05	554.7784756490171	18.79	0.22452	18.79	18.735	18.959	0					34	25	2	0	0	0	0.31086	1	1197	1197		2.4985	0.65425	1	24969	+		17109	11157	11326	11441	23039	23039					-0.007349989617068786
RDIYRSQSF	9	Unmodified	_RDIYRSQSF_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000483639.1_1_1:154525170-154525290:-|nuORF;ENST00000467683.5_1_1:154523946-154525290:-|nuORF;nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2952270507812	2	586.296362	1170.57817	0.71639	0.00042002	-1.7221	-0.0010097	-1.0057	-0.00058966	586.294927088661	104.56	0.39645	104.59	104.44	104.84	0.034004					96	39	3	0	0	0	0.17428	2	26746	26713;26746		21.537	1.0834	1	471220			17110	3772	11327	11442	23040;23041	23041					-0.00029541784874709265
RDNILFGKEY	10	Unmodified	_RDNILFGKEY_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.55572509765625	3	418.887422	1253.64044	-0.12969	-5.4327E-05	-3.8743	-0.0016229	-4.004	-0.0016772	418.8858823623485	45.112	0.41679	45.199	45.033	45.449	0.08754					22	15	2	0	0	0	0.31777	1	8672	8672		5.4027	1.8157	1	96260			17111	1855	11328	11443	23042	23042					0.02376184563490824
RDPDEPVLL	9	Unmodified	_RDPDEPVLL_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1;ENST00000487654.5_1_1:46033819-46034819:+|nuORF	ENSG00000117448|ENST00000351829|AKR1A1	ENSG00000117448|ENST00000351829|AKR1A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2824096679688	2	527.282389	1052.55022	0.22098	0.00011652	-0.36977	-0.00019497	-0.14878	-7.8451E-05	527.2821506210249	50.97	0.67767	51.039	50.854	51.531	0.069878					57	26	3	0	0	0	0.24767	1	10501	10501		13.042	2.9685	1	349780			17112	2001	11329	11444	23043	23043					0.026051352350577872
RDPDEPVLL	9	Unmodified	_RDPDEPVLL_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1;ENST00000487654.5_1_1:46033819-46034819:+|nuORF	ENSG00000117448|ENST00000351829|AKR1A1	ENSG00000117448|ENST00000351829|AKR1A1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.282389	1052.55022	0.15616	8.234E-05	-0.098182	-5.177E-05	0.057978	3.0571E-05	527.2822623333586	51.081	0.88994	51.081	50.762	51.652	0	0.020728	0.00012137	NaN	13.042	57	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346760			17113	2001	11329	11444							0.026051352350577872
RDPEVFHPE	9	Unmodified	_RDPEVFHPE_					0	0	0		ENSG00000186104|ENST00000334636|CYP2R1	ENSG00000186104|ENST00000334636|CYP2R1	ENSG00000186104|ENST00000334636|CYP2R1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2880249023438	2	563.269813	1124.52507	0.27903	0.00015717	0.65145	0.00036694	0.93048	0.00052411	563.2704042732483	37.515	0.55746	37.515	37.34	37.897	0					35	19	3	0	0	0	0.25699	1	6606	6606		3.5965	0.60125	1	77956			17114	5067	11330	11445	23044	23044					-0.03220919567525016
RDPHTFLL	8	Unmodified	_RDPHTFLL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.77386474609375	2	499.774534	997.534515	0.64464	0.00032217	-1.4055	-0.00070246	-0.76091	-0.00038028	499.7737447558739	70.868	0.5094	70.927	70.728	71.237	0.058578					24	18	2	0	0	0	0.51415	1	16526	16526		10.824	0	1	66125			17115	4519	11331	11446	23045	23045					0.035648935086555866
RDQEMAAGFFT	11	Unmodified	_RDQEMAAGFFT_					0	0	0		ENSG00000197037|ENST00000394152|ZSCAN25;ENST00000473646.5_1_7:99214596-99221826:+|nuORF	ENSG00000197037|ENST00000394152|ZSCAN25	ENSG00000197037|ENST00000394152|ZSCAN25	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.7890014648438	2	636.787512	1271.56047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.557	1	92.593	92.093	93.093	0.03653								0	0	0	0.33024	1	23121	23121		4.1895	0.90819	1				17116	5265	11332	11447	23046	23046					-0.06444625102039936
RDRCFIYF	8	Unmodified	_RDRCFIYF_					0	0	0			REV__AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|20|2|anti-sense	REV__AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|20|2|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2733764648438	2	560.273844	1118.53313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.832	1	70.832	70.332	71.332	0								0	0	0	0.38182	1	16659	16659		24.674	4.2203	1		+		17117	7709	11333	11448	23047	23047					-0.021390638517686966
RDRFETIF	8	Unmodified	_RDRFETIF_					0	0	0		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2825927734375	2	542.282723	1082.55089	0.31475	0.00017069	0.11697	6.3432E-05	0.43173	0.00023412	542.2825905979983	46.847	0.87071	46.847	46.686	47.557	0					58	32	3	0	0	0	0.50159	1	9432	9432		12.532	0	1	373130			17118	7606	11334	11449	23048	23048					0.012919746747684258
RDRHDFDHF	9	Unmodified	_RDRHDFDHF_					0	0	0			REV__ENSG00000130254|ENST00000252542|SAFB2;REV__nc|ENSG00000160633|Q15424-2|SAFB	REV__ENSG00000130254|ENST00000252542|SAFB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.5244140625	3	415.523366	1243.54827	0.36556	0.0001519	2.0301	0.00084354	2.3956	0.00099544	415.52428827539933	50.792	0.29768	50.792	50.624	50.922	0					14	9	2	0	0	0	0.3182	1	10568	10568		2.4985	1.3051	1	52899	+		17119	9051;9853	11335	11450	23049	23049					-0.06376480730205003
RDRLLSIELQK	11	Unmodified	_RDRLLSIELQK_					0	0	0		nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.609130859375	3	457.608659	1369.80415	0.23022	0.00010535	-0.8339	-0.0003816	-0.60368	-0.00027625	457.60826892319983	94.226	2.1515	94.265	93.255	95.407	0.038086					178	93	3	0	0	0	0.41359	1	23553	23553		1.2148	0	1	691320			17120	4167	11336	11451	23050	23050					0.1340378233435331
RDTFRFKF	8	Unmodified	_RDTFRFKF_					0	0	0			REV__ENSG00000167207|ENST00000647318|NOD2	REV__ENSG00000167207|ENST00000647318|NOD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7901611328125	2	558.801083	1115.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.073	1	64.073	63.573	64.573	0								0	0	0	0.38439	1	14602	14602		20.454	3.5113	1		+		17121	10108	11337	11452	23051	23051					0.03444271291300538
RDTPVQNK	8	Unmodified	_RDTPVQNK_					0	0	0		ENST00000468979.1_1_20:3782308-3783795:+|nuORF;ENST00000480816.5_1_20:3781734-3783795:+|nuORF;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	ENST00000468979.1_1_20:3782308-3783795:+|nuORF	ENST00000468979.1_1_20:3782308-3783795:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2582702636719	2	479.259248	956.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.55	1	119.57	119.07	120.07	0.013062								0	0	0	0.38822	1	30025	30025		0.69038	0	1				17122	1246	11338	11453	23052	23052					0.023951151236133228
RDVARNTEQQ	10	Unmodified	_RDVARNTEQQ_					0	0	0		ENST00000582337.5_1_18:72347588-72515991:+|nuORF	ENST00000582337.5_1_18:72347588-72515991:+|nuORF	ENST00000582337.5_1_18:72347588-72515991:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2169189453125	3	406.205814	1215.59561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.227	1	65.227	64.727	65.727	0								0	0	0	0.33599	1	14954	14954		2.6312	0.13275	1				17123	7226	11339	11454	23053	23053					-0.0035624624988486175
RDYLWQLIK	9	Unmodified	_RDYLWQLIK_					0	0	0		ENSG00000203870|ENST00000369529|SMIM9	ENSG00000203870|ENST00000369529|SMIM9	ENSG00000203870|ENST00000369529|SMIM9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	412.2483825683594	3	412.236274	1233.68699	0.42474	0.00017509	1.2891	0.00053143	1.7139	0.00070652	412.23672637302934	54.623	0.49778	54.688	54.485	54.983	0.065128					55	26	3	0	0	0	0.2779	1	11676	11676		9.544	0	1	429070			17124	5445	11340	11455	23054	23054					0.07949669185404673
READQPLRTY	10	Unmodified	_READQPLRTY_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8824768066406	3	416.882559	1247.62585	-0.28809	-0.0001201	0.04327	1.8038E-05	-0.24482	-0.00010206	416.88251956452996	28.652	0.33238	28.731	28.56	28.892	0.078993					38	18	3	0	0	0	0.44253	1	3789	3789		3.5927	0.23695	1	34795			17125	3235	11341	11456	23055	23055					0.011941124153509008
READQPLRTY	10	Unmodified	_READQPLRTY_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	416.882559	1247.62585	0.044411	1.8514E-05	-0.59687	-0.00024882	-0.55246	-0.00023031	416.88229229305296	28.744	0.33132	28.744	28.584	28.915	0	0.0063497	-0.00036735	NaN	3.5927	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26029			17126	3235	11341	11456							0.011941124153509008
REAGGALMSP	10	Unmodified	_REAGGALMSP_					0	0	0		ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7582702636719	2	494.747659	987.480765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.945	1	44.034	43.534	44.534	0.088924								0	0	0	0.33599	1	8356	8356		4.897	0.141	1				17127	4913	11342	11457	23056	23056					-0.01347646985357187
REAMSLELF	9	Unmodified	_REAMSLELF_					0	0	0		ENSG00000261649|ENST00000567390|GOLGA6L7	ENSG00000261649|ENST00000567390|GOLGA6L7	ENSG00000261649|ENST00000567390|GOLGA6L7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2798461914062	2	548.278792	1094.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.165	1	95.165	94.665	95.665	0								0	0	0	0.21527	1	24075	24075		15.847	1.0089	1				17128	5720	11343	11458	23057	23057					-0.00045920637057861313
REARQQRF	8	Unmodified	_REARQQRF_					0	0	0		nc|ENSG00000025434|Q13133-3|NR1H3;ENSG00000025434|ENST00000441012|NR1H3	nc|ENSG00000025434|Q13133-3|NR1H3	nc|ENSG00000025434|Q13133-3|NR1H3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2718505859375	2	545.796863	1089.57917	0.31283	0.00017074	2.2539	0.0012302	2.5668	0.0014009	545.7982726619989	52.523	0.39175	52.591	52.412	52.804	0.067173					16	10	2	0	0	0	0.35759	1	10929	10929		12.532	3.1841	1	94851			17129	491	11344	11459	23058	23058					0.03796717374689251
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.859619140625	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.1	1	114.1	113.6	114.6	0								0	0	0	0.32823	1	29165	29165		4.897	0	1		+		17130	9844	11345	11460	23059	23059					0.07451545000571969
RECAQEGHELF	11	Unmodified	_RECAQEGHELF_					0	0	0			REV__nc|ENSG00000160051|Q4KMZ1-2|IQCC	REV__nc|ENSG00000160051|Q4KMZ1-2|IQCC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7209777832031	3	440.199671	1317.57718	0.06437	2.8335E-05	-3.477	-0.0015306	-3.4126	-0.0015022	440.19821790724967	59.124	0.24074	59.195	59.114	59.355	0.070995					14	9	2	0	0	0	0.31036	1	12961	12961		8.7518	1.6501	1	37729	+		17131	9839	11346	11461	23060	23060					-0.0689012421607913
RECLIDPDL	9	Unmodified	_RECLIDPDL_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2850341796875	2	537.268424	1072.5223	0.48935	0.00026291	0.91207	0.00049003	1.4014	0.00075294	537.2687001910977	52.154	1.7765	52.221	51.611	53.387	0.067169					192	72	4	0	0	0	0.18364	2	10990	10965;10990		20.454	3.198	1	1093600			17132	717	11347	11462	23061;23062	23062					-0.011065110166782688
REDDEGIL	8	Unmodified	_REDDEGIL_					0	0	0			REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1	REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2563781738281	2	473.727446	945.44034	0.3453	0.00016358	-0.84651	-0.00040101	-0.50121	-0.00023744	473.7273990925916	54.6	0.35965	54.6	54.467	54.827	0					22	17	2	0	0	0	0.3528	1	11703	11703		19.257	2.1441	1	133460	+		17133	10109	11348	11463	23063	23063					-0.03456290104134041
REDDEGIL	8	Unmodified	_REDDEGIL_					0	0	0			REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1	REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.25616455078125	2	473.727446	945.44034	0.31211	0.00014786	-0.37572	-0.00017799	-0.06361	-3.0134E-05	473.7274943948511	54.527	0.37094	54.593	54.498	54.869	0.065128					27	20	2	0	0	0	0.34866	1	11556	11556		22.736	3.4793	1	149870	+		17134	10109	11348	11463	23064	23064					-0.03456290104134041
REDLNFWY	8	Unmodified	_REDLNFWY_					0	0	0			REV__tr|U7T3M0|U7T3M0_FUSNUPhosphopantetheineadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaDPE=3SV=1	REV__tr|U7T3M0|U7T3M0_FUSNUPhosphopantetheineadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaDPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7666015625	2	571.766906	1141.51926	0.10377	5.9334E-05	-0.77262	-0.00044176	-0.66884	-0.00038242	571.7664159100533	19.696	0.20482	19.791	19.7	19.905	0.095232					41	24	2	0	0	0	0.54081	1	1333	1333		0.79363	0	1	20487	+		17135	13285	11349	11464	23065	23065					-0.045840180791856255
REDLNFWY	8	Unmodified	_REDLNFWY_					0	0	0			REV__tr|U7T3M0|U7T3M0_FUSNUPhosphopantetheineadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaDPE=3SV=1	REV__tr|U7T3M0|U7T3M0_FUSNUPhosphopantetheineadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaDPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	571.766906	1141.51926	-0.35091	-0.00020064	-0.32072	-0.00018338	-0.67163	-0.00038401	571.7665831223537	19.837	0.24658	19.837	19.691	19.937	0	0.023093	0.00028668	NaN	0.79363	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16489	+		17136	13285	11349	11464							-0.045840180791856255
REEEEERRRL	10	Unmodified	_REEEEERRRL_					0	0	0		ENST00000274000.9_2_4:113153062-113153314:+|nuORF	ENST00000274000.9_2_4:113153062-113153314:+|nuORF	ENST00000274000.9_2_4:113153062-113153314:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.712890625	3	467.911289	1400.71204	-0.050569	-2.3662E-05	0.68309	0.00031963	0.63252	0.00029596	467.9116822151843	35.837	1.203	35.916	35.457	36.66	0.078827					84	46	3	0	0	0	0.31853	1	5786	5786		0.62683	0.12087	1	57574			17137	5920	11350	11465	23066	23066					0.02771072250038742
REEPIEWEF	9	Unmodified	_REEPIEWEF_					0	0	0		nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1	nc|ENSG00000257923|P39880-5|CUX1	nc|ENSG00000257923|P39880-5|CUX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7894897460938	2	617.790578	1233.5666	0.11291	6.9752E-05	-1.0192	-0.00062963	-0.90627	-0.00055988	617.7899003247387	65.152	0.52391	65.152	64.897	65.421	0					22	18	2	0	0	0	0.1646	1	14943	14943		22.658	6.9195	1	140240			17138	5704	11351	11466	23067	23067					-0.0408378359886683
REEQEEPEP	9	Unmodified	_REEQEEPEP_					0	0	0			REV__ENSG00000170035|ENST00000410062|UBE2E3	REV__ENSG00000170035|ENST00000410062|UBE2E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7517700195312	2	571.75165	1141.48875	0.046387	2.6522E-05	-0.48177	-0.00027545	-0.43538	-0.00024893	571.7513552696274	21.534	0.34652	21.636	21.499	21.846	0.10178					60	35	2	0	0	0	0.34704	1	1757	1757		0.52476	0	1	27881	+		17139	10197	11352	11467	23068	23068					-0.07633841254914842
REEVWLTEDEL	11	Unmodified	_REEVWLTEDEL_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.0639343261719	3	473.564785	1417.67252	-0.35689	-0.00016901	0.77253	0.00036584	0.41565	0.00019684	473.56513527573713	31.504	0.48262	31.578	31.346	31.829	0.073782					50	23	3	0	0	0	0.31101	1	4559	4559		0.40827	0.24894	1	46300	+		17140	8145	11353	11468	23069	23069					-0.01960492544048975
REEWLRARPDL	11	Unmodified	_REEWLRARPDL_					0	0	0		ENST00000459719.6_1_Y:21729315-21729453:+|nuORF	ENST00000459719.6_1_Y:21729315-21729453:+|nuORF	ENST00000459719.6_1_Y:21729315-21729453:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7474365234375	3	480.928392	1439.76335	0.16909	8.1322E-05	-3.3258	-0.0015995	-3.1567	-0.0015182	481.2615365513324	64.019	0.88297	64.09	63.706	64.589	0.071014					37	30	2	0	0	0	0.3109	1	14401	14401		2.9264	1.02	1	183150			17141	6596	11354	11469	23070	23070					0.06105441014733515
REFCYAME	8	Unmodified	_REFCYAME_					0	0	0		nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6|SLC45A4	nc|ENSG00000022567|Q5BKX6|SLC45A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7462768554688	2	524.71497	1047.41539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.509	1	28.592	28.092	29.092	0.082134								0	0	0	0.38822	1	3734	3734		0.69038	0	1				17142	480	11355	11470	23071	23071					-0.10642384502739333
REFQWHHTF	9	Unmodified	_REFQWHHTF_					0	0	0			REV__nc|ENSG00000156697|Q9BVJ6-2|UTP14A	REV__nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3035888671875	2	644.304521	1286.59449	-0.19511	-0.00012571	-1.0869	-0.00070028	-1.282	-0.000826	644.3037777371362	26.698	0.28789	26.785	26.672	26.96	0.0867					40	22	2	0	0	0	0.34754	1	3246	3246		0.45834	0.057624	1	32423	+		17143	9763	11356	11471	23072	23072					-0.03734415828125748
REFVMAAG	8	Unmodified	_REFVMAAG_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7212219238281	2	440.720913	879.427273	0.3432	0.00015126	0.73617	0.00032444	1.0794	0.0004757	440.7211522619193	58.181	0.28198	58.181	57.935	58.217	0					32	9	4	0	0	0	0.50159	1	12784	12784		12.532	3.1841	1	3287400			17144	3286	11357	11472	23073	23073					-0.0172639969721331
REGAITFTW	9	Unmodified	_REGAITFTW_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.305908203125	2	540.777274	1079.53999	0.41144	0.0002225	-0.42429	-0.00022945	-0.012849	-6.9483E-06	540.7771808167213	62.363	0.37246	62.363	62.203	62.575	0					26	13	3	0	0	0	0.20294	1	14103	14103		24.991	4.5373	1	142170			17145	1903	11358	11473	23074	23074					0.003405723004561878
REGAITFTW	9	Unmodified	_REGAITFTW_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.3058471679688	2	540.777274	1079.53999	0.46758	0.00025286	-0.58805	-0.000318	-0.12047	-6.5147E-05	540.7771924545248	62.34	0.5175	62.412	62.142	62.659	0.072701					25	17	2	0	0	0	0.15837	1	13940	13940		34.932	19.085	1	156730			17146	1903	11358	11473	23075	23075					0.003405723004561878
REGALGQSGP	10	Unmodified	_REGALGQSGP_					0	0	0			REV__nc|ENSG00000160963|Q96A83-2|COL26A1	REV__nc|ENSG00000160963|Q96A83-2|COL26A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2161560058594	2	486.24888	970.483208	-0.49196	-0.00023921	-0.049876	-2.4252E-05	-0.54183	-0.00026347	486.24883507482303	21.867	0.20583	21.867	21.784	21.99	0					25	19	2	0	0	0	0.31838	1	1976	1976		1.4819	0	1	13380	+		17147	9862	11359	11474	23076	23076					-0.003214752560438683
REGKEWETVL	10	Unmodified	_REGKEWETVL_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.3106689453125	2	623.824952	1245.63535	0.14288	8.9131E-05	0.97587	0.00060877	1.1188	0.00069791	623.8254752525927	50.165	0.43724	50.238	50.007	50.444	0.073124					26	14	2	0	0	0	0.31821	1	10203	10203		1.1933	0	1	86453			17148	1156	11360	11475	23077	23077					0.022358807008458825
REIQPAAFS	9	Unmodified	_REIQPAAFS_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.23333740234375	2	509.769448	1017.52434	-0.58002	-0.00029568	-0.32281	-0.00016456	-0.90283	-0.00046024	509.76923075914607	42.033	0.30982	42.033	41.91	42.22	0					16	10	2	0	0	0	0.21603	1	7884	7884		20.454	5.6154	1	36257			17149	2165	11361	11476	23078	23078					0.016282857834198694
REIQPAAFS	9	Unmodified	_REIQPAAFS_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.233154296875	2	509.769448	1017.52434	-0.35765	-0.00018232	-0.10956	-5.5851E-05	-0.46721	-0.00023817	509.7693635302266	41.979	0.30236	42.068	41.941	42.243	0.089764					16	11	2	0	0	0	0.2298	1	7733	7733		16.942	2.3606	1	33327			17150	2165	11361	11476	23079	23079					0.016282857834198694
REKKEKLS	8	Unmodified	_REKKEKLS_					0	0	0		ENST00000578895.5_1_17:80405330-80405492:-|nuORF	ENST00000578895.5_1_17:80405330-80405492:-|nuORF	ENST00000578895.5_1_17:80405330-80405492:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.3060607910156	2	509.306198	1016.59784	0.20702	0.00010544	-0.092455	-4.7088E-05	0.11457	5.835E-05	509.30600103146077	87.415	0.89265	87.442	87.215	88.108	0.027573					82	33	4	0	0	0	0.53817	1	21633	21633		2.5775	0	1	415600			17151	7211	11362	11477	23080	23080					0.09020834225896124
REKKYNSG	8	Unmodified	_REKKYNSG_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2593688964844	2	491.259248	980.503943	-0.22902	-0.00011251	-0.20028	-9.839E-05	-0.4293	-0.0002109	491.2594703993397	23.919	3.2751	23.919	23.657	26.932	0					623	261	5	0	0	0	0.53858	1	3095	3095		2.3027	0	1	3789000			17152	13545	11363	11478	23081	23081					0.012911151236153273
REKQRNRKKQ	10	Unmodified	_REKQRNRKKQ_					0	0	0			REV__ENST00000310123.7_1_19:35625842-35625896:-|nuORF	REV__ENST00000310123.7_1_19:35625842-35625896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.60821533203125	3	457.607764	1369.80146	0.67482	0.0003088	0.46964	0.00021491	1.1445	0.00052372	457.60781129591237	92.505	1.5347	92.505	91.927	93.462	0					141	58	3	0	0	0	0.47446	1	23507	23507		0.15932	0	1	222480	+		17153	11370	11364	11479	23082	23082					0.13135371720068179
RELELRHIK	9	Unmodified	_RELELRHIK_					0	0	0			REV__nc|ENSG00000183137|Q8IYX8-2|CEP57L1	REV__nc|ENSG00000183137|Q8IYX8-2|CEP57L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.290283203125	2	597.359296	1192.70404	0.22448	0.0001341	-0.89703	-0.00053585	-0.67255	-0.00040175	597.3586377221333	94.078	0.82838	94.116	93.914	94.742	0.038094					87	38	4	0	0	0	0.25875	1	23670	23670		1.8442	0	1	489430	+		17154	10590	11365	11480	23083	23083					0.11539589791209437
RELPCIRKF	9	Unmodified	_RELPCIRKF_					0	0	0		ENSG00000235034|ENST00000425202|C19orf81	ENSG00000235034|ENST00000425202|C19orf81	ENSG00000235034|ENST00000425202|C19orf81	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3524780273438	2	581.331693	1160.64883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.54	1	109.54	109.04	110.04	0								0	0	0	0.27782	1	28186	28186		3.5965	0	1				17155	5625	11366	11481	23084	23084					0.07493459999068364
REMAGVAF	8	Unmodified	_REMAGVAF_					0	0	0			REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7209777832031	2	440.720913	879.427273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.798	1	58.868	58.368	59.368	0.070477								0	0	0	0.38796	1	12855	12855		14.582	0	1		+		17156	9819	11367	11482	23085	23085					-0.0172639969721331
REMAGVAF	8	Unmodified	_REMAGVAF_					0	0	0			REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7209777832031	2	440.720913	879.427273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.989	1	59.06	58.56	59.56	0.070477								0	0	0	0.38796	1	12914	12914		14.582	0	1		+		17157	9819	11367	11482	23086	23086					-0.0172639969721331
REMAGVAF	8	Unmodified	_REMAGVAF_					0	0	0			REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7209777832031	2	440.720913	879.427273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.142	1	59.214	58.714	59.714	0.072132								0	0	0	0.38796	1	12961	12961		14.582	0	1		+		17158	9819	11367	11482	23087	23087					-0.0172639969721331
REMAGVAF	8	Unmodified	_REMAGVAF_					0	0	0			REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.720703125	2	440.720913	879.427273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.328	1	59.4	58.9	59.9	0.072338								0	0	0	0.38796	1	13018	13018		14.582	0	1		+		17159	9819	11367	11482	23088	23088					-0.0172639969721331
REMQQCWGE	9	Unmodified	_REMQQCWGE_					0	0	0			REV__nc|ENSG00000170579|O14490-3|DLGAP1	REV__nc|ENSG00000170579|O14490-3|DLGAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.7402954101562	2	583.739508	1165.46446	0.54512	0.00031821	0.76275	0.00044525	1.3079	0.00076345	583.7398880424802	95.516	0.74981	95.555	95.287	96.036	0.038864					134	35	6	0	0	0	0.33978	1	24111	24111		1.4819	0	1	5349700	+		17160	10219	11368	11483	23089	23089					-0.11165096213744619
RENIHPYRKEL	11	Unmodified	_RENIHPYRKEL_					0	0	0		ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.6000061035156	3	485.600275	1453.779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.959	1	38.959	38.459	39.459	0								0	0	0	0.33405	1	6979	6979		2.8433	1.5136	1				17161	4840	11369	11484	23090	23090					0.0702572753179993
RENIHPYRKEL	11	Unmodified	_RENIHPYRKEL_					0	0	0		ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.60009765625	3	485.600275	1453.779	0.080857	3.9264E-05	-0.2038	-9.8966E-05	-0.12294	-5.9702E-05	485.6001656134137	38.676	0.64185	38.763	38.536	39.178	0.08688					60	23	4	0	0	0	0.40518	1	6760	6760		3.134	1.9191	1	147580			17162	4840	11369	11484	23091	23091					0.0702572753179993
RENSHRLF	8	Unmodified	_RENSHRLF_					0	0	0		ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7633666992188	2	529.778139	1057.54173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.581	1	76.581	76.081	77.081	0								0	0	0	0.38822	1	18419	18419		9.3474	2.9933	1				17163	5014	11370	11485	23092	23092					0.015256261090826229
REQMQRMKGF	10	Unmodified	_REQMQRMKGF_					0	0	0		ENST00000510751.5_1_5:169015420-169022772:+|nuORF	ENST00000510751.5_1_5:169015420-169022772:+|nuORF	ENST00000510751.5_1_5:169015420-169022772:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.9165344238281	3	437.553391	1309.63834	0.0048032	2.1016E-06	-0.1259	-5.5087E-05	-0.12109	-5.2985E-05	437.55337207637126	43.944	0.83565	43.944	43.829	44.665	0					35	28	2	0	0	0	0.31851	1	8613	8613		0.77653	0.14971	1	49196			17164	6917	11371	11486	23093	23093					-0.004088907176537759
REQWWRWN	8	Unmodified	_REQWWRWN_					0	0	0		ENST00000510393.5_1_1:16083148-16084686:+|nuORF	ENST00000510393.5_1_1:16083148-16084686:+|nuORF	ENST00000510393.5_1_1:16083148-16084686:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.8063354492188	2	630.804688	1259.59482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.886	1	28.965	28.465	29.465	0.078287								0	0	0	0.38822	1	3845	3845		0.69038	0.088878	1				17165	6911	11372	11487	23094	23094					-0.02458996108248357
RERDQEAL	8	Unmodified	_RERDQEAL_					0	0	0			REV__ENST00000359486.7_2_22:42557349-42564731:-|nuORF	REV__ENST00000359486.7_2_22:42557349-42564731:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.28466796875	2	508.759612	1015.50467	0.28725	0.00014614	1.2059	0.00061352	1.4932	0.00075966	508.7601410066927	76.774	0.65	76.774	76.494	77.144	0					39	22	2	0	0	0	0.35759	1	18443	18443		11.64	0	1	118100	+		17166	11530	11373	11488	23095	23095					-0.002460902273355714
RERDQEAL	8	Unmodified	_RERDQEAL_					0	0	0			REV__ENST00000359486.7_2_22:42557349-42564731:-|nuORF	REV__ENST00000359486.7_2_22:42557349-42564731:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	508.759612	1015.50467	0.35424	0.00018023	0.69415	0.00035315	1.0484	0.00053338	508.76008487656156	76.738	0.6818	76.778	76.441	77.123	0.03923	0.0016652	-0.00032082	NaN	11.64	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125740	+		17167	11530	11373	11488							-0.002460902273355714
RERHLKKVG	9	Unmodified	_RERHLKKVG_					0	0	0		ENST00000471231.6_1_16:30937150-30941463:+|nuORF;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	ENST00000471231.6_1_16:30937150-30941463:+|nuORF	ENST00000471231.6_1_16:30937150-30941463:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.845947265625	2	561.846356	1121.67816	0.38303	0.00021521	-1.0524	-0.00059129	-0.66936	-0.00037608	561.8456410443935	90.957	0.86748	90.957	90.734	91.602	0					65	31	3	0	0	0	0.3354	1	22855	22855		2.0598	0.57785	1	368300			17168	1125	11374	11489	23096	23096					0.12218740339585565
RERRRRRNLF	10	Unmodified	_RERRRRRNLF_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.9591064453125	3	486.95902	1457.85523	0.28813	0.00014031	-0.11073	-5.3922E-05	0.1774	8.6385E-05	486.9588551046137	96.81	1.8447	96.85	96.136	97.981	0.039772					130	94	2	0	0	0	0.47446	1	24342	24342		0.15932	0.15932	1	432080	+		17169	9631	11375	11490	23097	23097					0.14461588942458548
RERTVLLD	8	Unmodified	_RERTVLLD_					0	0	0			REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L	REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.29071044921875	2	501.290548	1000.56654	0.77457	0.00038829	-0.082864	-4.1539E-05	0.69171	0.00034675	501.2904008193115	80.898	3.0648	80.898	79.958	83.023	0					366	106	4	0	0	0	0.53557	1	20056	20056		4.3292	0	1	2422800	+		17170	8667	11376	11491	23098	23098					0.06628261191792717
RERTVLLD	8	Unmodified	_RERTVLLD_					0	0	0			REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L	REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2905578613281	2	501.290548	1000.56654	0.3181	0.00015946	0.20797	0.00010426	0.52608	0.00026372	501.290516632223	83.896	0.70628	83.918	83.589	84.295	0.021751					56	25	3	0	0	0	0.53557	1	20516	20516		4.3292	4.3292	1	304960	+		17171	8667	11376	11491	23099	23099					0.06628261191792717
RESPPPSALQ	10	Unmodified	_RESPPPSALQ_					0	0	0		ENSG00000176182|ENST00000322217|MYPOP	ENSG00000176182|ENST00000322217|MYPOP	ENSG00000176182|ENST00000322217|MYPOP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2857055664062	2	541.285463	1080.55637	-0.29214	-0.00015813	0.26921	0.00014572	-0.022933	-1.2413E-05	541.2855243325398	19.472	0.45004	19.472	19.314	19.764	0					108	51	3	0	0	0	0.46899	1	1404	1404		1.1933	0	1	56667			17172	4652	11377	11492	23100	23100					0.019316534665676954
RESPVSSPSW	10	Unmodified	_RESPVSSPSW_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2785034179688	2	566.275095	1130.53564	0.021252	1.2034E-05	-2.5425	-0.0014397	-2.5212	-0.0014277	567.2776342799755	105.08	0.78152	105.08	104.77	105.55	0					153	79	3	0	0	0	0.45794	1	27050	27050		3.2813	0.78282	1	148420	+		17173	10451	11378	11493	23101	23101					-0.024409369130808045
RESPVSSPSW	10	Unmodified	_RESPVSSPSW_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2727661132812	2	566.275095	1130.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.25	1	106.25	105.75	106.75	0								0	0	0	0.3327	1	27393	27393		8.7454	0	1		+		17174	10451	11378	11493	23102	23102					-0.024409369130808045
RESSSPYYDN	10	Unmodified	_RESSSPYYDN_					0	0	0			REV__nc|ENSG00000180116|Q86WS4-3|REDIC1	REV__nc|ENSG00000180116|Q86WS4-3|REDIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.7592163085938	2	609.257099	1216.49965	0.67758	0.00041282	-2.2586	-0.0013761	-1.581	-0.00096326	609.255591103904	85.231	0.41226	85.231	85.07	85.482	0					27	14	2	0	0	0	0.43771	1	21042	21042		7.1017	0.89594	1	399600	+		17175	10500	11379	11494	23103	23103					-0.09994438880585221
RESSSPYYDN	10	Unmodified	_RESSSPYYDN_					0	0	0			REV__nc|ENSG00000180116|Q86WS4-3|REDIC1	REV__nc|ENSG00000180116|Q86WS4-3|REDIC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	609.257099	1216.49965	0.85901	0.00052336	-2.4063	-0.0014661	-1.5473	-0.00094271	609.2553480420968	85.234	0.41874	85.257	85.091	85.509	0.023125	0.012863	-8.5245E-05	NaN	7.1017	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478290	+		17176	10500	11379	11494							-0.09994438880585221
RESTDPPIP	9	Unmodified	_RESTDPPIP_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2611999511719	2	506.258914	1010.50327	0.2625	0.00013289	4.2504	0.0021518	4.5129	0.0022847	506.2608069534616	76.519	0.51047	76.519	76.357	76.867	0					26	17	3	0	0	0	0.24767	1	18423	18423		13.042	1.4022	1	135870	+		17177	10598	11380	11495	23104	23104					-0.0015572431608461557
RESTDPPIP	9	Unmodified	_RESTDPPIP_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	506.258914	1010.50327	0.2625	0.00013289	4.2504	0.0021518	4.5129	0.0022847	506.2608069534616	76.519	0.51047	76.519	76.357	76.867	0	-0.026353	0.00053332	NaN	13.042	26	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135870	+		17178	10598	11380	11495							-0.0015572431608461557
RESTDPPIP	9	Unmodified	_RESTDPPIP_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	506.258914	1010.50327	0.31044	0.00015717	3.4977	0.0017708	3.8082	0.0019279	506.2603756681415	76.532	0.40328	76.571	76.313	76.716	0.03923	0.026353	-0.00022876	NaN	13.042	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69631	+		17179	10598	11380	11495							-0.0015572431608461557
RETLFIHMSY	10	Unmodified	_RETLFIHMSY_					0	0	0			REV__nc|ENSG00000227345|Q86W56-5|PARG	REV__nc|ENSG00000227345|Q86W56-5|PARG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.88519287109375	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.94	1	100.94	100.44	101.44	0								0	0	0	0.33959	1	25832	25832		0.69767	0	1		+		17180	11035	11381	11496	23105	23105					-0.002748713086020871
RETLKKQA	8	Unmodified	_RETLKKQA_					0	0	0			REV__tr|U7SYS6|U7SYS6_FUSNUtRNA(guanine-N(1)-)-methyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00919PE=4SV=1	REV__tr|U7SYS6|U7SYS6_FUSNUtRNA(guanine-N(1)-)-methyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00919PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2931213378906	2	487.293091	972.571629	0.27284	0.00013295	0.075578	3.6829E-05	0.34842	0.00016978	487.2930151178203	85.616	0.89604	85.616	85.339	86.235	0					76	38	3	0	0	0	0.53817	2	21181	21181;21231		2.5775	0.27475	1	312640	+		17181	13235	11382	11497	23106;23107	23106					0.08424565054417599
RETRAAPL	8	Unmodified	_RETRAAPL_					0	0	0		ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF	ENST00000606557.1_1_20:17948856-17948946:-|nuORF	ENST00000606557.1_1_20:17948856-17948946:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.26458740234375	2	457.264333	912.514114	0.50293	0.00022997	-0.22184	-0.00010144	0.28109	0.00012853	457.26415319391543	74.365	1.5564	74.365	74.095	75.652	0					109	58	3	0	0	0	0.53858	1	17865	17865		2.3027	0.24298	1	276670			17182	6750	11383	11498	23108	23108					0.054357228488470355
RETRAAPL	8	Unmodified	_RETRAAPL_					0	0	0		ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF	ENST00000606557.1_1_20:17948856-17948946:-|nuORF	ENST00000606557.1_1_20:17948856-17948946:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2642517089844	2	457.264333	912.514114	0.30981	0.00014166	-0.038822	-1.7752E-05	0.27098	0.00012391	457.2641738472786	74.492	1.608	74.541	74.016	75.624	0.048546					111	58	3	0	0	0	0.53858	2	17742	17742;17800		2.3027	0	1	216580			17183	6750	11383	11498	23109;23110	23109					0.054357228488470355
REVPEADAL	9	Unmodified	_REVPEADAL_					0	0	0		sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2589111328125	2	500.258914	998.503274	0.15194	7.6011E-05	-0.23565	-0.00011789	-0.083708	-4.1876E-05	500.2587468416624	39.147	0.54289	39.147	38.918	39.461	0					39	19	3	0	0	0	0.22083	1	7029	7029		16.149	0	1	152650			17184	13380	11384	11499	23111	23111					0.003962756838859605
REWPSSGS	8	Unmodified	_REWPSSGS_					0	0	0		ENST00000374279.3_1_9:114659094-114659565:+|nuORF	ENST00000374279.3_1_9:114659094-114659565:+|nuORF	ENST00000374279.3_1_9:114659094-114659565:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8698425292969	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.775	1	73.775	73.275	74.275	0								0	0	0	0.38822	1	17558	17558		0.69038	0	1				17185	6231	11385	11500	23112	23112					-0.05213122210182064
REYLKLDK	8	Unmodified	_REYLKLDK_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.8084716796875	2	532.808574	1063.60259	0.11554	6.1559E-05	-0.21023	-0.00011201	-0.094698	-5.0456E-05	532.8083934843659	34.928	0.6945	34.928	34.754	35.449	0					58	24	3	0	0	0	0.53926	1	5887	5887		1.8442	0	1	209140			17186	2281	11386	11501	23113	23113					0.07333718368636255
REYLMSGG	8	Unmodified	_REYLMSGG_					0	0	0		nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2;ENST00000603865.1_1_11:75507249-75507624:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF	nc|ENSG00000062282|Q96PD7-2|DGAT2	nc|ENSG00000062282|Q96PD7-2|DGAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7161560058594	2	456.715827	911.417102	0.15743	7.1902E-05	0.94855	0.00043322	1.106	0.00050512	456.7161757057522	58.373	0.58926	58.373	58.256	58.846	0					30	21	2	0	0	0	0.53118	1	12882	12882		7.2892	0	1	296490			17187	654	11387	11502	23114	23114					-0.042150074224423406
REYLMSGG	8	Unmodified	_REYLMSGG_					0	0	0		nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2;ENST00000603865.1_1_11:75507249-75507624:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF	nc|ENSG00000062282|Q96PD7-2|DGAT2	nc|ENSG00000062282|Q96PD7-2|DGAT2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	456.715827	911.417102	0.14063	6.423E-05	1.0825	0.00049439	1.2231	0.00055862	456.71623253680843	58.224	0.77628	58.295	57.972	58.749	0.070477	-0.039371	5.0117E-05	NaN	7.2892	59	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	418540			17188	654	11387	11502							-0.042150074224423406
REYVNVSQ	8	Unmodified	_REYVNVSQ_					0	0	0		ENST00000564447.5_1_16:29000600-29001330:+|nuORF;ENST00000562701.5_1_16:28997691-29001330:+|nuORF;nc|ENSG00000213658|O43561-4|LAT;ENSG00000213658|ENST00000395456|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT;nc|ENSG00000213658|O43561-3|LAT	ENST00000564447.5_1_16:29000600-29001330:+|nuORF	ENST00000564447.5_1_16:29000600-29001330:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7521667480469	2	497.751256	993.487959	-0.065788	-3.2746E-05	1.7032	0.00084776	1.6374	0.00081501	497.7519923718112	27.504	0.66248	27.504	27.156	27.818	0					86	50	2	0	0	0	0.30285	2	3557	3557;3592		34.402	0	1	135520			17189	5551	11388	11503	23115;23116	23115					-0.009045911132830042
REYVNVSQ	8	Unmodified	_REYVNVSQ_					0	0	0		ENST00000564447.5_1_16:29000600-29001330:+|nuORF;ENST00000562701.5_1_16:28997691-29001330:+|nuORF;nc|ENSG00000213658|O43561-4|LAT;ENSG00000213658|ENST00000395456|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT;nc|ENSG00000213658|O43561-3|LAT	ENST00000564447.5_1_16:29000600-29001330:+|nuORF	ENST00000564447.5_1_16:29000600-29001330:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7525329589844	2	497.751256	993.487959	-0.047469	-2.3628E-05	1.6311	0.00081188	1.5836	0.00078825	497.7520297308219	27.395	0.48968	27.481	27.224	27.713	0.086699					55	40	2	0	0	0	0.52476	1	3430	3430		9.3831	0	1	139920			17190	5551	11388	11503	23117	23117					-0.009045911132830042
RFAEQENQSKE	11	Unmodified	_RFAEQENQSKE_					0	0	0			REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.8848876953125	3	455.884629	1364.63206	0.24892	0.00011348	0.23286	0.00010616	0.48179	0.00021964	455.88458149283974	104.76	0.24867	104.79	104.73	104.98	0.033997					48	27	3	0	0	0	0.311	1	26835	26835		0.50596	0	1	175410	+		17191	9672	11389	11504	23118	23118					-0.035674141438448714
RFCDNVWTF	9	Unmodified	_RFCDNVWTF_					0	0	0		ENST00000267869.8_1_15:59931333-59949661:-|nuORF;ENSG00000140307|ENST00000396060|GTF2A2	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.26904296875	2	594.268758	1186.52296	0.47638	0.0002831	-0.44265	-0.00026305	0.033725	2.0042E-05	594.2683288664116	70.241	1.7066	70.241	69.933	71.64	0					146	61	4	0	0	0	0.2125	1	16723	16723		17.113	7.7298	1	594430			17192	3004	11390	11505	23119	23119					-0.06283671577011773
RFCDNVWTF	9	Unmodified	_RFCDNVWTF_					0	0	0		ENST00000267869.8_1_15:59931333-59949661:-|nuORF;ENSG00000140307|ENST00000396060|GTF2A2	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.268310546875	2	594.268758	1186.52296	0.40965	0.00024344	-0.36406	-0.00021635	0.045586	2.709E-05	594.268409615176	70.14	1.7665	70.201	69.915	71.682	0.060562					163	69	4	0	0	0	0.26705	1	16456	16456		10.8	5.0677	1	548040			17193	3004	11390	11505	23120	23120					-0.06283671577011773
RFCRRKCR	8	Unmodified	_RFCRRKCR_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.8056640625	2	562.805654	1123.59675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.31	1	33.384	32.884	33.884	0.074322								0	0	0	0.38822	1	5161	5161		0	0	1				17194	3446	11391	11506	23121	23121					0.03990018104354931
RFDEAALSI	9	Unmodified	_RFDEAALSI_					0	0	0		nc|ENSG00000134265|Q99747-2|NAPG;ENSG00000134265|ENST00000322897|NAPG	nc|ENSG00000134265|Q99747-2|NAPG	nc|ENSG00000134265|Q99747-2|NAPG	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.244140625	2	511.269281	1020.52401	0.25223	0.00012896	-0.84638	-0.00043273	-0.59415	-0.00030377	511.26875036523916	50.092	0.56765	50.165	49.817	50.385	0.07312					33	19	2	0	0	0	0.18759	1	10194	10194		27.629	0	1	146440			17195	2654	11392	11507	23122	23122					0.0145686606357458
RFDPFNFL	8	Unmodified	_RFDPFNFL_					0	0	0		ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-3|USP6;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000170832|ENST00000300896|USP32;ENST00000585720.1_1_17:58285392-58286144:-|nuORF	ENSG00000129204|ENST00000574788|USP6	ENSG00000129204|ENST00000574788|USP6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.293701171875	2	528.269084	1054.52362	0.47531	0.00025109	0.71638	0.00037844	1.1917	0.00062953	528.7711811716065	81.457	0.61835	81.478	81.228	81.846	0.021866					57	22	4	0	0	0	0.3393	1	19750	19750		29.082	8.628	1	272180			17196	2423	11393	11508	23123	23123					-0.001465088656232183
RFDPLGHYL	9	Unmodified	_RFDPLGHYL_					0	0	0		nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2703247070312	2	559.293091	1116.57163	0.44259	0.00024754	0.69043	0.00038615	1.133	0.00063369	559.2934393736888	56.035	0.35134	56.035	55.866	56.217	0					26	12	3	0	0	0	0.19558	1	12127	12127		26.268	4.5215	1	206860			17197	1670	11394	11509	23124	23124					0.018005650544182572
RFDSDVGEF	9	Unmodified	_RFDSDVGEF_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant;ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000223865|ENST00000418931|HLA-DPB1	ENSG00000232629|ENST00000437316|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.2409057617188	2	536.240721	1070.46689	0.26059	0.00013974	0.42574	0.0002283	0.68632	0.00036803	536.2407433071488	49.821	0.78245	49.821	49.621	50.404	0					70	27	3	0	0	0	0.088609	1	10272	10272		34.932	16.786	1	547570			17198	5204	11395	11510	23125	23125					-0.06552601212820264
RFDSDVGEF	9	Unmodified	_RFDSDVGEF_					0	0	0		ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant;ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000223865|ENST00000418931|HLA-DPB1	ENSG00000232629|ENST00000437316|HLA-DQB2	ENSG00000232629|ENST00000437316|HLA-DQB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.2408447265625	2	536.240721	1070.46689	0.45288	0.00024285	0.064745	3.4719E-05	0.51763	0.00027757	536.2406130569384	49.723	0.69735	49.796	49.594	50.291	0.073124					58	24	3	0	0	0	0.038996	1	10109	10109		45.74	16.658	1	526200			17199	5204	11395	11510	23126	23126					-0.06552601212820264
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.2804565429688	2	592.28018	1182.54581	0.2162	0.00012805	0.066742	3.953E-05	0.28294	0.00016758	592.2802794690681	50.29	2.5341	50.29	50.05	52.584	0					199	88	3	0	0	0	0.0040167	3	10431	10390;10431;10474		103.42	72.783	1	2852500			17200	2548	11396	11511	23127;23128;23129	23128					-0.03816329187861811
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.2804565429688	2	592.28018	1182.54581	0.31595	0.00018713	-0.014918	-8.8359E-06	0.30103	0.00017829	592.2802566596488	50.204	1.437	50.277	50.069	51.506	0.07312					128	53	4	0	0	0	0.0034419	3	10228	10228;10281;10323		106.94	65.101	1	3125800			17201	2548	11396	11511	23130;23131;23132	23130					-0.03816329187861811
RFEEKHAYF	9	Unmodified	_RFEEKHAYF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.5365295410156	3	409.536612	1225.58801	-0.26602	-0.00010895	-0.076334	-3.1262E-05	-0.34236	-0.00014021	409.5365393170625	30.971	1.4531	31.044	30.77	32.223	0.073782					193	70	4	0	0	0	0.21723	3	4422	4422;4627;4671		16.566	7.0219	1	365960			17202	1252	11397	11512	23133;23134;23135	23133					-0.015763537795010052
RFFKRKIM	8	Unmodified	_RFFKRKIM_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.70361328125	2	563.339321	1124.66409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.81	1	114.81	114.31	115.31	0								0	0	0	0.38822	1	29306	29306		0.69038	0	1				17203	2711	11398	11513	23136	23136					0.10674371586947018
RFIGATANF	9	Unmodified	_RFIGATANF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7669677734375	2	498.766709	995.518865	0.25036	0.00012487	-0.30162	-0.00015044	-0.051257	-2.5565E-05	498.76656695553515	49.521	0.45351	49.521	49.34	49.794	0					34	15	4	0	0	0	0.046885	1	10169	10169		63.961	24.003	1	177270			17204	4520	11399	11514	23137	23137					0.02092606991595858
RFIGATANF	9	Unmodified	_RFIGATANF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.766709	995.518865	0.21235	0.00010591	0.64677	0.00032259	0.85911	0.0004285	498.7670441463632	49.475	0.43185	49.551	49.338	49.77	0.076607	0.01505	0.00047777	NaN	63.961	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168110			17205	4520	11399	11514							0.02092606991595858
RFILNLPTF	9	Unmodified	_RFILNLPTF_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.830078125	2	560.829309	1119.64407	0.87852	0.0004927	0.45692	0.00025625	1.3354	0.00074895	560.8294704033727	80.27	2.1027	80.27	79.989	82.092	0					223	72	5	0	0	0	7.6155E-09	13	19556	19496;19505;19556;19599;19644;19795;19841;19851;19894;19942;19961;20020;20084		163.04	76.824	1	13285000			17206	2326	11400	11515	23138;23139;23140;23141;23142;23143;23144;23145;23146;23147;23148;23149;23150	23140					0.08902899127974706
RFILNLPTF	9	Unmodified	_RFILNLPTF_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.829833984375	2	560.829309	1119.64407	0.73056	0.00040972	0.59165	0.00033182	1.3222	0.00074154	560.8295549219072	80.258	2.4672	80.282	79.988	82.456	0.023613					238	88	5	0	0	0	1.0594E-10	9	19392	19323;19344;19392;19434;19484;19648;19697;19848;19876		176.84	84.346	1	8703200			17207	2326	11400	11515	23151;23152;23153;23154;23155;23156;23157;23158;23159	23153					0.08902899127974706
RFIPYTEEF	9	Unmodified	_RFIPYTEEF_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2986450195312	2	601.298039	1200.58152	0.46991	0.00028256	0.50024	0.0003008	0.97016	0.00058335	601.2982125671847	61.144	0.5836	61.144	60.834	61.418	0					52	20	3	0	0	0	0.029291	1	13693	13693		51.63	18.844	1	271930			17208	1559	11401	11516	23160	23160					-0.010742917308789401
RFIPYTEEF	9	Unmodified	_RFIPYTEEF_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.29833984375	2	601.298039	1200.58152	0.3546	0.00021322	0.66697	0.00040105	1.0216	0.00061427	601.2983439953182	60.998	0.53483	61.072	60.879	61.414	0.073418					44	17	3	0	0	0	0.22861	1	13563	13563		15.248	7.093	1	280440			17209	1559	11401	11516	23161	23161					-0.010742917308789401
RFIRMLRFV	9	Unmodified	_RFIRMLRFV_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.8241577148438	2	619.371153	1236.72775	-0.19119	-0.00011842	1.3861	0.00085851	1.1949	0.00074009	619.3720129895746	95.56	0.73771	95.56	95.349	96.087	0					70	36	3	0	0	0	0.25989	1	24282	24282		0.52476	0	1	603760	+		17210	8944	11402	11517	23162	23162					0.11885732024052231
RFKCYPAL	8	Unmodified	_RFKCYPAL_					0	0	0			REV__ENST00000480855.1_1_2:172299988-172306494:+|nuORF	REV__ENST00000480855.1_1_2:172299988-172306494:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2699279785156	2	499.26803	996.521507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.519	1	46.519	46.019	47.019	0								0	0	0	0.38822	1	9263	9263		8.5933	0	1		+		17211	8797	11403	11518	23163	23163					0.023107391249027387
RFKEANNFL	9	Unmodified	_RFKEANNFL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.8038940429688	2	569.803823	1137.59309	-0.051096	-2.9115E-05	0.068927	3.9275E-05	0.01783	1.016E-05	569.8038522197901	39.566	1.2757	39.566	39.347	40.623	0					80	45	3	0	0	0	0.13341	1	7146	7146		26.268	5.8145	1	226450			17212	3334	11404	11519	23164	23164					0.029799500831359182
RFKEANNFL	9	Unmodified	_RFKEANNFL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8038330078125	2	569.803823	1137.59309	0.10013	5.7057E-05	0.085061	4.8468E-05	0.18519	0.00010552	569.8038404544415	39.419	0.60866	39.508	39.321	39.93	0.088562					62	24	4	0	0	0	0.13341	2	7020	6970;7020		26.268	6.7254	1	242280			17213	3334	11404	11519	23165;23166	23166					0.029799500831359182
RFKRDEVI	8	Unmodified	_RFKRDEVI_					0	0	0			REV__ENSG00000177485|ENST00000557385|ZBTB33	REV__ENSG00000177485|ENST00000557385|ZBTB33	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8170776367188	2	531.806365	1061.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.746	1	83.768	83.268	84.268	0.021744								0	0	0	0.38719	1	20443	20443		15.847	0	1		+		17214	10430	11405	11520	23167	23167					0.06984253945756791
RFKTQPVTF	9	Unmodified	_RFKTQPVTF_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.795654296875	2	562.316566	1122.61858	0.15751	8.857E-05	-0.2775	-0.00015605	-0.11999	-6.7475E-05	562.3164447578008	39.078	0.57101	39.078	38.89	39.461	0					48	20	3	0	0	0	0.18759	1	7006	7006		27.629	15.989	1	166680			17215	5120	11406	11521	23168	23168					0.06217424605551969
RFKTQPVTF	9	Unmodified	_RFKTQPVTF_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3165893554688	2	562.316566	1122.61858	0.3071	0.00017269	-0.86054	-0.0004839	-0.55344	-0.00031121	562.3164181752619	38.975	0.63742	39.062	38.835	39.472	0.08688					52	25	3	0	0	0	0.098463	1	6868	6868		32.786	19.743	1	167540			17216	5120	11406	11521	23169	23169					0.06217424605551969
RFKVLLRV	8	Unmodified	_RFKVLLRV_					0	0	0		ENST00000275732.5_1_7:100285918-100285987:-|nuORF	ENST00000275732.5_1_7:100285918-100285987:-|nuORF	ENST00000275732.5_1_7:100285918-100285987:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3672485351562	2	515.847836	1029.68112	0.0099682	5.1421E-06	0.16852	8.6929E-05	0.17849	9.2071E-05	515.8479672169387	111.91	0.57257	111.91	111.79	112.36	0					85	67	2	0	0	0	0.3576	1	28659	28659		2.5775	0	1	1202600			17217	5923	11407	11522	23170	23170					0.16746615464421666
RFKVLLRV	8	Unmodified	_RFKVLLRV_					0	0	0		ENST00000275732.5_1_7:100285918-100285987:-|nuORF	ENST00000275732.5_1_7:100285918-100285987:-|nuORF	ENST00000275732.5_1_7:100285918-100285987:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.84814453125	2	515.847836	1029.68112	0.31543	0.00016271	0.037607	1.9399E-05	0.35304	0.00018211	515.8476688251535	111.89	0.33556	111.9	111.8	112.14	0.014595					59	42	2	0	0	0	0.53423	2	28514	28514;28548		5.2307	0	1	876710			17218	5923	11407	11522	23171;23172	23171					0.16746615464421666
RFLAATFLL	9	Unmodified	_RFLAATFLL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.318603515625	2	526.318577	1050.6226	0.27345	0.00014392	0.32836	0.00017282	0.60181	0.00031674	526.3187479745419	77.492	1.0558	77.492	77.338	78.394	0					95	38	4	0	0	0	0.03918	2	18669	18669;18718		45.7	13.394	1	1820800			17219	2078	11408	11523	23173;23174	23173					0.09931514099275773
RFLAATFLL	9	Unmodified	_RFLAATFLL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3187866210938	2	526.318577	1050.6226	0.3404	0.00017916	0.23443	0.00012339	0.57484	0.00030255	526.3187124940257	77.422	1.1539	77.456	77.326	78.48	0.034485					86	41	4	0	0	0	0.029291	1	18545	18545		51.63	5.6089	1	1457200			17220	2078	11408	11523	23175	23175					0.09931514099275773
RFLDDLGLKF	10	Unmodified	_RFLDDLGLKF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.3433227539062	2	612.342781	1222.67101	0.24584	0.00015054	0.72589	0.00044449	0.97173	0.00059503	612.3434024218168	71.019	2.0669	71.019	70.786	72.853	0					144	72	3	0	0	0	0.1558	1	16770	16770		53.317	35.17	1	12586000			17221	554	11409	11524	23176	23176					0.06857962948492968
RFLDDLGLKF	10	Unmodified	_RFLDDLGLKF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.5639953613281	3	408.564279	1222.67101	0.3516	0.00014365	-0.37331	-0.00015252	-0.021708	-8.8691E-06	408.56415077238694	71.012	1.8868	71.07	70.775	72.662	0.058578					156	67	5	0	0	0	0.024374	8	16505	16505;16552;16602;16657;16704;16757;16824;17029		64.688	45.031	1	5416500			17222	554	11409	11524	23177;23178;23179;23180;23181;23182;23183;23184	23177					0.06857962948492968
RFLDDLGLKF	10	Unmodified	_RFLDDLGLKF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.343505859375	2	612.342781	1222.67101	0.43053	0.00026363	0.42712	0.00026154	0.85765	0.00052517	612.3431837480201	71.012	2.3714	71.07	70.728	73.099	0.058578					181	84	3	0	0	0	0.00022979	1	16569	16569		112.04	85.773	1	8965800			17223	554	11409	11524	23185	23185					0.06857962948492968
RFLDDLGLKF	10	Unmodified	_RFLDDLGLKF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	408.564279	1222.67101	0.62459	0.00025518	-0.62442	-0.00025512	0.00016681	6.8154E-08	408.56406228929177	71.019	1.9834	71.019	70.763	72.747	0	-0.025792	-0.00018787	NaN	64.688	161	69	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5626600			17224	554	11409	11524							0.06857962948492968
RFLDFITNI	9	Unmodified	_RFLDFITNI_					0	0	0		nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C	nc|ENSG00000166908|Q8TBX8-2|PIP4K2C	nc|ENSG00000166908|Q8TBX8-2|PIP4K2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.81689453125	2	569.816399	1137.61824	0.76383	0.00043524	-0.30732	-0.00017511	0.45652	0.00026013	569.8160991239534	81.42	0.60746	81.42	81.202	81.81	0					40	20	3	0	0	0	0.034744	1	19903	19903		47.732	20.848	1	320430			17225	4189	11410	11525	23186	23186					0.054940048857361035
RFLDFITNI	9	Unmodified	_RFLDFITNI_					0	0	0		nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C	nc|ENSG00000166908|Q8TBX8-2|PIP4K2C	nc|ENSG00000166908|Q8TBX8-2|PIP4K2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.816650390625	2	569.816399	1137.61824	0.45288	0.00025806	-0.065602	-3.7381E-05	0.38728	0.00022068	569.8163274389955	81.453	0.5627	81.475	81.255	81.818	0.021866					44	20	3	0	0	0	0.10802	1	19719	19719		30.703	15.455	1	236340			17226	4189	11410	11525	23187	23187					0.054940048857361035
RFLDNKVLLSF	11	Unmodified	_RFLDNKVLLSF_					0	0	0		ENST00000527346.5_1_11:44101033-44105339:+|nuORF;ENSG00000110455|ENST00000263776|ACCS	ENST00000527346.5_1_11:44101033-44105339:+|nuORF	ENST00000527346.5_1_11:44101033-44105339:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.08837890625	3	451.2626	1350.76597	0.67437	0.00030432	-0.72635	-0.00032778	-0.05198	-2.3456E-05	451.26227330719837	67.31	0.15497	67.31	67.213	67.368	0					9	6	2	0	0	0	0.31013	1	15594	15594		7.846	1.9779	1	50491			17227	1669	11411	11526	23188	23188					0.10461896419701588
RFLDNKVLLSF	11	Unmodified	_RFLDNKVLLSF_					0	0	0		ENST00000527346.5_1_11:44101033-44105339:+|nuORF;ENSG00000110455|ENST00000263776|ACCS	ENST00000527346.5_1_11:44101033-44105339:+|nuORF	ENST00000527346.5_1_11:44101033-44105339:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.52923583984375	3	451.2626	1350.76597	0.63676	0.00028735	-0.43349	-0.00019562	0.20327	9.1729E-05	451.2625289709036	67.307	0.23877	67.372	67.264	67.502	0.065071					9	7	2	0	0	0	0.31098	1	15469	15469		1.1098	0	1	50185			17228	1669	11411	11526	23189	23189					0.10461896419701588
RFLFERVCLW	10	Unmodified	_RFLFERVCLW_					0	0	0			REV__ENST00000556029.5_2_12:98909466-98909595:+|nuORF	REV__ENST00000556029.5_2_12:98909466-98909595:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.91265869140625	3	456.913025	1367.71725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.712	1	66.778	66.278	67.278	0.065071								0	0	0	0.33869	1	15259	15259		1.7423	0.14999	1		+		17229	12417	11412	11527	23190	23190					0.04809704578974561
RFLNDPGHLLW	11	Unmodified	_RFLNDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.57855224609375	3	456.578811	1366.7146	0.555	0.0002534	-0.60545	-0.00027644	-0.050451	-2.3035E-05	456.57844563290695	68.804	0.51992	68.804	68.348	68.868	0					28	18	2	0	0	0	0.38987	1	16021	16021		6.6235	2.2173	1	117600			17230	5647	11413	11528	23191	23191					0.04591572445656311
RFLNDPGHLLW	11	Unmodified	_RFLNDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.57904052734375	3	456.578811	1366.7146	0.37776	0.00017248	-0.33735	-0.00015403	0.040416	1.8453E-05	456.57870378218934	65.16	2.5413	65.229	64.902	67.443	0.068909					246	96	5	0	0	0	0.011153	12	14779	14737;14779;14827;14871;14912;14957;15004;15049;15094;15153;15200;15357		74.306	55.585	1	7471600			17231	5647	11413	11528	23192;23193;23194;23195;23196;23197;23198;23199;23200;23201;23202;23203	23193					0.04591572445656311
RFLSGIINF	9	Unmodified	_RFLSGIINF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.8062133789062	2	533.805834	1065.59712	0.45495	0.00024285	0.42515	0.00022695	0.8801	0.0004698	533.8059310024379	74.556	0.92405	74.556	74.37	75.295	0					76	34	4	0	0	0	0.024248	2	17796	17796;17848		55.235	8.0484	1	964930			17232	3142	11414	11529	23204;23205	23204					0.06694039576859723
RFLSGIINF	9	Unmodified	_RFLSGIINF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8060302734375	2	533.805834	1065.59712	0.60227	0.0003215	0.099477	5.3102E-05	0.70175	0.0003746	533.8058217215031	74.537	0.72131	74.585	74.369	75.09	0.048538					70	25	4	0	0	0	0.17428	1	17732	17732		21.537	1.0834	1	849210			17233	3142	11414	11529	23206	23206					0.06694039576859723
RFMHYYTR	8	Unmodified	_RFMHYYTR_					0	0	0		ENST00000422095.1_3_7:92000906-92025787:+|nuORF;ENSG00000001629|ENST00000265742|ANKIB1	ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENST00000422095.1_3_7:92000906-92025787:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.2163696289062	2	587.284743	1172.55493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.722	1	41.722	41.222	42.222	0								0	0	0	0.38822	1	7812	7812		0.69038	0.088878	1				17234	323	11415	11530	23207	23207					-0.024442591032084238
RFMYEYSI	8	Unmodified	_RFMYEYSI_					0	0	0		CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229	CON__Q3MHN5	CON__Q3MHN5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.775390625	2	554.760235	1107.50592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.694	1	38.78	38.28	39.28	0.08688								0	0	0	0.38822	1	6772	6772		2.3027	0	1			+	17235	208	11416	11531	23208	23208					-0.04353592182792454
RFNNPDATRGG	11	Unmodified	_RFNNPDATRGG_					0	0	0			REV__ENST00000535153.2_1_14:29253482-29253782:-|nuORF	REV__ENST00000535153.2_1_14:29253482-29253782:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2314453125	2	602.794518	1203.57448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.782	1	21.782	21.282	22.282	0								0	0	0	0.34212	1	1947	1947		0	0	1		+		17236	12379	11417	11532	23209	23209					-0.01916211558750547
RFPCGPPY	8	Unmodified	_RFPCGPPY_					0	0	0			REV__ENST00000367450.7_1_1:192998689-192998773:-|nuORF	REV__ENST00000367450.7_1_1:192998689-192998773:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.7231750488281	2	468.723455	935.432358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.788	1	96.827	96.327	97.327	0.039772								0	0	0	0.38822	1	24414	24414		0.79363	0	1		+		17237	11565	11418	11533	23210	23210					-0.03794095834609834
RFPKGGHLL	9	Unmodified	_RFPKGGHLL_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8064575195312	2	512.806168	1023.59778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.47	1	102.47	101.97	102.97	0								0	0	0	0.28527	1	26295	26295		2.0598	0	1				17238	4196	11419	11534	23211	23211					0.08692879016575716
RFPQEMVKGSQ	11	Unmodified	_RFPQEMVKGSQ_					0	0	0		ENSG00000177047|ENST00000380229|IFNW1	ENSG00000177047|ENST00000380229|IFNW1	ENSG00000177047|ENST00000380229|IFNW1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.22308349609375	3	436.223928	1305.64996	0.12646	5.5165E-05	-0.19382	-8.4549E-05	-0.06736	-2.9384E-05	436.2238472420845	36.939	0.82829	37.021	36.739	37.567	0.081715					56	31	2	0	0	0	0.41359	1	6306	6306		1.2148	0	1	55489			17239	4686	11420	11535	23212	23212					0.009356295773386591
RFPRSPYT	8	Unmodified	_RFPRSPYT_					0	0	0			REV__ENST00000529480.1_1_11:57449153-57457721:+|nuORF	REV__ENST00000529480.1_1_11:57449153-57457721:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2708129882812	2	512.272158	1022.52976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.243	1	14.243	13.743	14.743	0								0	0	0	0.38822	1	340	340		2.0598	1.2661	1		+		17240	12346	11421	11536	23213	23213					0.019400093658987316
RFQEKFFIF	9	Unmodified	_RFQEKFFIF_					0	0	0		nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.22900390625	3	421.229119	1260.66553	0.3821	0.00016095	-0.48869	-0.00020585	-0.10659	-4.4899E-05	421.22887757321286	65.825	0.94131	65.892	65.663	66.604	0.066872					64	35	2	0	0	0	0.20358	1	14997	14997		12.873	2.0731	1	476410			17241	868	11422	11537	23214	23214					0.04562284156691021
RFRQFGYQ	8	Unmodified	_RFRQFGYQ_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;nc|ENSG00000172466|P17028-2|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2833251953125	2	551.283057	1100.55156	0.60021	0.00033089	1.7847	0.00098385	2.3849	0.0013147	551.2838749153995	93.544	0.55406	93.581	93.359	93.913	0.037369					50	21	3	0	0	0	0.50159	1	23481	23481		12.532	0.89125	1	254090			17242	4499	11423	11538	23215	23215					0.005308141144723777
RFRQYIYHV	9	Unmodified	_RFRQYIYHV_					0	0	0			REV__ENSG00000183801|ENST00000329293|OLFML1	REV__ENSG00000183801|ENST00000329293|OLFML1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3470458984375	2	641.346189	1280.67783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.42	1	104.45	103.95	104.95	0.034004								0	0	0	0.29233	1	26695	26695		0.6015	0.076735	1		+		17243	10612	11424	11539	23216	23216					0.048713206197362524
RFSPPLRLF	9	Unmodified	_RFSPPLRLF_					0	0	0		ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8351440429688	2	566.834926	1131.6553	0.21136	0.0001198	0.40829	0.00023143	0.61965	0.00035124	566.8350718053998	61.074	0.58375	61.147	60.851	61.435	0.073421					43	19	3	0	0	0	0.056368	1	13556	13556		41.956	19.219	1	270800			17244	6213	11425	11540	23217	23217					0.09473721222116183
RFTDQTFKPKH	11	Unmodified	_RFTDQTFKPKH_					0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.9160461425781	3	468.917604	1403.73098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.654	1	69.654	69.154	70.154	0								0	0	0	0.33897	1	16301	16301		1.1098	0.6038	1		+		17245	7791	11426	11541	23218	23218					0.04526653611742404
RFTHILNI	8	Unmodified	_RFTHILNI_					0	0	0			REV__ENSG00000163466|ENST00000315717|ARPC2	REV__ENSG00000163466|ENST00000315717|ARPC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7713317871094	2	507.298176	1012.5818	0.35663	0.00018092	0.36306	0.00018418	0.71969	0.00036509	507.29739429278465	83.07	0.32339	83.07	82.928	83.251	0					14	10	2	0	0	0	0.3576	1	20440	20440		2.3027	0	1	81880	+		17246	9940	11427	11542	23219	23219					0.07601172779664012
RFTTEEAL	8	Unmodified	_RFTTEEAL_					0	0	0		nc|ENSG00000183765|O96017-11|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	nc|ENSG00000183765|O96017-11|CHEK2	nc|ENSG00000183765|O96017-11|CHEK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7478332519531	2	483.748182	965.481811	-0.021606	-1.0452E-05	-0.025488	-1.233E-05	-0.047094	-2.2782E-05	483.74813268732794	38.652	0.48948	38.652	38.514	39.004	0					45	18	3	0	0	0	0.50815	1	6953	6953		11.64	0	1	85400			17247	134	11428	11543	23220	23220					-0.002311093448156498
RFVDEVPFM	9	Unmodified	_RFVDEVPFM_					0	0	0			REV__ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	REV__ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.3082275390625	2	570.281334	1138.54812	0.23055	0.00013148	-0.421	-0.00024009	-0.19045	-0.00010861	570.281196327731	78.348	0.088333	78.348	78.272	78.361	0					4	2	2	0	0	0	0.25051	1	18954	18954		7.9102	0	1	32598	+		17248	8194	11429	11544	23221	23221					-0.0156161677439286
RFVNVVPTF	9	Unmodified	_RFVNVVPTF_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.80615234375	2	539.805834	1077.59712	0.57807	0.00031204	-1.4413	-0.00077802	-0.86323	-0.00046598	539.8058151158401	64.245	1.5518	64.245	63.87	65.421	0					171	55	6	0	0	0	0.047633	2	14666	14666;14782		43.858	9.4566	1	1838000			17249	3419	11430	11545	23222;23223	23222					0.06142039576843672
RFVNVVPTF	9	Unmodified	_RFVNVVPTF_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8062133789062	2	539.805834	1077.59712	0.58691	0.00031682	0.036942	1.9942E-05	0.62385	0.00033676	539.8057700241442	64.151	1.09	64.222	63.999	65.089	0.071014					90	39	3	0	0	0	0.031665	1	14491	14491		49.933	9.9833	1	1361600			17250	3419	11430	11545	23224	23224					0.06142039576843672
RFWKLILLTWL	11	Unmodified	_RFWKLILLTWL_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.9748229980469	3	496.974502	1487.90168	0.05377	2.6722E-05	0.70621	0.00035097	0.75998	0.00037769	496.9747368959416	107.51	0.29346	107.51	107.32	107.61	0					102	29	4	0	0	0	0.4185	2	27711	27711;27748		0.094841	0	1	615350			17251	6636	11431	11546	23225;23226	23225					0.17724216001192872
RFWKLILLTWL	11	Unmodified	_RFWKLILLTWL_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.9749755859375	3	496.974502	1487.90168	0.3581	0.00017797	0.40959	0.00020356	0.76769	0.00038152	496.9745711053093	107.43	0.37108	107.46	107.27	107.64	0.025711					111	37	4	0	0	0	0.4185	1	27567	27567		0.094841	0	1	677320			17252	6636	11431	11546	23227	23227					0.17724216001192872
RFYDNRTM	8	Unmodified	_RFYDNRTM_					0	0	0		ENST00000380916.8_1_9:14618745-14618955:-|nuORF	ENST00000380916.8_1_9:14618745-14618955:-|nuORF	ENST00000380916.8_1_9:14618745-14618955:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7574462890625	2	551.758558	1101.50256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.779	1	39.867	39.367	40.367	0.088562								0	0	0	0.38822	1	7100	7100		2.0598	0	1				17253	6289	11432	11547	23228	23228					-0.044128422368203246
RFYKGCVV	8	Unmodified	_RFYKGCVV_					0	0	0			REV__nc|ENSG00000170100|Q96MU6-2|ZNF778	REV__nc|ENSG00000170100|Q96MU6-2|ZNF778	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.76983642578125	2	486.260205	970.505857	0.12159	5.9124E-05	2.3972	0.0011656	2.5188	0.0012248	486.2615205112879	38.198	0.52595	38.198	37.929	38.455	0					33	17	3	0	0	0	0.3576	1	6738	6738		5.2307	1.2863	1	95634	+		17254	10202	11433	11548	23229	23229					0.019424526078751114
RGALAWSSGS	10	Unmodified	_RGALAWSSGS_					0	0	0		ENST00000555117.1_1_14:31343755-31344058:+|nuORF	ENST00000555117.1_1_14:31343755-31344058:+|nuORF	ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2510681152344	2	496.251423	990.488293	-0.016732	-8.3035E-06	0.12535	6.2206E-05	0.10862	5.3902E-05	496.2514214642185	28.62	0.60713	28.702	28.492	29.1	0.082132					74	38	3	0	0	0	0.46827	1	3835	3835		1.3295	0.13619	1	190620			17255	7120	11434	11549	23230	23230					-0.007331713934149775
RGAPPPRG	8	Unmodified	_RGAPPPRG_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2331237792969	2	404.232836	806.45112	0.62433	0.00025237	0.18192	7.3538E-05	0.80625	0.00032591	404.23296724344436	82.934	0.778	82.934	82.563	83.341	0					36	26	2	0	0	0	0.53858	1	20394	20394		2.3027	0	1	171740			17256	2323	11435	11550	23231	23231					0.040152018514731935
RGAPPPRG	8	Unmodified	_RGAPPPRG_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2336120605469	2	404.232836	806.45112	0.096857	3.9153E-05	0.64679	0.00026145	0.74364	0.00030061	404.23312176370956	82.942	0.87963	82.964	82.454	83.333	0.021744					42	30	2	0	0	0	0.53494	1	20167	20167		4.756	0	1	198850			17257	2323	11435	11550	23232	23232					0.040152018514731935
RGAPPPRG	8	Unmodified	_RGAPPPRG_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	404.232836	806.45112	0.62433	0.00025237	0.18192	7.3538E-05	0.80625	0.00032591	404.23296724344436	82.934	0.778	82.934	82.563	83.341	0	-0.014584	-0.00024956	NaN	4.756	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171740			17258	2323	11435	11550							0.040152018514731935
RGARRRLRSWQ	11	Unmodified	_RGARRRLRSWQ_					0	0	0		ENST00000343028.8_3_12:27167184-27167292:-|nuORF	ENST00000343028.8_3_12:27167184-27167292:-|nuORF	ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2834777832031	3	481.283503	1440.82868	0.18008	8.6667E-05	0.089825	4.3231E-05	0.2699	0.0001299	481.2834637670582	96.865	2.1896	96.865	95.948	98.137	0					220	108	4	0	0	0	0.41405	1	24671	24671		1.1098	0	1	954950			17259	6092	11436	11551	23233	23233					0.12589900051102632
RGAVVGPR	8	Unmodified	_RGAVVGPR_					0	0	0		ENST00000373043.1_2_1:38273978-38274170:+|nuORF	ENST00000373043.1_2_1:38273978-38274170:+|nuORF	ENST00000373043.1_2_1:38273978-38274170:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.2487487792969	2	406.248486	810.48242	0.07888	3.2045E-05	0.13856	5.6291E-05	0.21744	8.8336E-05	406.2484987448317	83.587	0.99162	83.609	83.304	84.295	0.021744					119	35	5	0	0	0	0.54097	1	20526	20526		0.69038	0	1	5313400			17260	6221	11437	11552	23234	23234					0.06959774885569914
RGERPALA	8	Unmodified	_RGERPALA_					0	0	0			REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2509460449219	2	435.251226	868.487899	0.013352	5.8114E-06	-0.070637	-3.0745E-05	-0.057285	-2.4933E-05	435.2511094986148	71.958	1.137	72.014	71.732	72.869	0.055939					57	39	2	0	0	0	0.54081	1	16976	16976		0.79363	0	1	139300	+		17261	12335	11438	11553	23235	23235					0.04839453677357142
RGERPALA	8	Unmodified	_RGERPALA_					0	0	0			REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	435.251226	868.487899	0.17306	7.5324E-05	-0.24295	-0.00010574	-0.069892	-3.0421E-05	435.2510047671649	72.043	1.0702	72.043	71.783	72.853	0	0.014684	-8.8745E-05	NaN	0.79363	57	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117910	+		17262	12335	11438	11553							0.04839453677357142
RGERPALA	8	Unmodified	_RGERPALA_					0	0	0			REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	435.251226	868.487899	0.013352	5.8114E-06	-0.070637	-3.0745E-05	-0.057285	-2.4933E-05	435.2511094986148	71.958	1.137	72.014	71.732	72.869	0.055939	-0.014684	6.1255E-05	NaN	0.79363	57	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139300	+		17263	12335	11438	11553							0.04839453677357142
RGFKKKSVF	9	Unmodified	_RGFKKKSVF_					0	0	0		ENSG00000198046|ENST00000504904|ZNF667	ENSG00000198046|ENST00000504904|ZNF667	ENSG00000198046|ENST00000504904|ZNF667	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.318359375	2	548.834926	1095.6553	0.0065077	3.5717E-06	0.99683	0.00054709	1.0033	0.00055067	548.8351162519003	109.82	0.21166	109.82	109.76	109.97	0					40	30	2	0	0	0	0.32375	1	28265	28265		3.5965	0.60125	1	2205300			17264	5339	11439	11554	23236	23236					0.11129721222141598
RGFLDNLL	8	Unmodified	_RGFLDNLL_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.26922607421875	2	474.269084	946.523616	-0.075667	-3.5887E-05	0.15885	7.5336E-05	0.083179	3.9449E-05	474.26908513348417	50.57	0.7421	50.57	50.32	51.062	0					56	25	3	0	0	0	0.3565	1	10453	10453		30.225	0	1	363210	+		17265	9876	11440	11555	23237	23237					0.048214911343848144
RGFLDNLL	8	Unmodified	_RGFLDNLL_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.26898193359375	2	474.269084	946.523616	0.0028298	1.3421E-06	0.26311	0.00012479	0.26594	0.00012613	474.26912236250934	50.494	0.62001	50.567	50.319	50.939	0.07312					44	21	3	0	0	0	0.3565	1	10308	10308		30.225	0	1	255930	+		17266	9876	11440	11555	23238	23238					0.048214911343848144
RGFLLCPLVC	10	Unmodified	_RGFLLCPLVC_					0	0	0		ENST00000605201.1_1_14:35591893-35592281:+|nuORF	ENST00000605201.1_1_14:35591893-35592281:+|nuORF	ENST00000605201.1_1_14:35591893-35592281:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8014526367188	2	560.803922	1119.59329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.52	1	101.52	101.02	102.02	0								0	0	0	0.33648	1	26007	26007		4.3292	0.73274	1				17267	7306	11441	11556	23239	23239					0.03827910487098052
RGGGGYRHSW	10	Unmodified	_RGGGGYRHSW_					0	0	0			REV__ENSG00000175718|ENST00000424776|RBMXL3	REV__ENSG00000175718|ENST00000424776|RBMXL3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7743530273438	2	566.773388	1131.53222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.1	1	106.13	105.63	106.63	0.029739								0	0	0	0.3327	1	27159	27159		8.7454	1.4562	1		+		17268	10386	11442	11557	23240	23240					-0.028281421764404513
RGGHAGATYIF	11	Unmodified	_RGGHAGATYIF_					0	0	0		nc|ENSG00000021645|Q9HDB5-3|NRXN3;nc|ENSG00000021645|Q9HDB5-2|NRXN3;nc|ENSG00000021645|Q9HDB5-4|NRXN3;nc|ENSG00000021645|Q9HDB5|NRXN3	nc|ENSG00000021645|Q9HDB5-3|NRXN3	nc|ENSG00000021645|Q9HDB5-3|NRXN3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.2938232421875	2	575.293622	1148.57269	0.20377	0.00011723	-0.34231	-0.00019693	-0.13854	-7.9698E-05	575.2936183711425	91.337	0.50226	91.372	91.11	91.612	0.035446					27	17	2	0	0	0	0.30574	1	22751	22751		18.373	0	1	124780			17269	7446	11443	11558	23241	23241					0.004347794232899105
RGGHAGATYIF	11	Unmodified	_RGGHAGATYIF_					0	0	0		nc|ENSG00000021645|Q9HDB5-3|NRXN3;nc|ENSG00000021645|Q9HDB5-2|NRXN3;nc|ENSG00000021645|Q9HDB5-4|NRXN3;nc|ENSG00000021645|Q9HDB5|NRXN3	nc|ENSG00000021645|Q9HDB5-3|NRXN3	nc|ENSG00000021645|Q9HDB5-3|NRXN3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	575.293622	1148.57269	0.39263	0.00022588	-0.8839	-0.0005085	-0.49126	-0.00028262	575.2934709874236	91.423	0.49911	91.423	91.032	91.531	0	0.025485	-0.00053257	NaN	18.373	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65137			17270	7446	11443	11558							0.004347794232899105
RGGLGGQGCRA	11	Unmodified	_RGGLGGQGCRA_					0	0	0		ACSS3|p.R49Q|1|0.48|ENSG00000111058|chr12:81078266-81078266|G/A|missense_variant	ACSS3|p.R49Q|1|0.48|ENSG00000111058|chr12:81078266-81078266|G/A|missense_variant	ACSS3|p.R49Q|1|0.48|ENSG00000111058|chr12:81078266-81078266|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.78564453125	2	516.261799	1030.50905	-0.026456	-1.3658E-05	-3.0639	-0.0015818	-3.0903	-0.0015954	516.7592040387401	32.322	0.17131	32.396	32.268	32.439	0.07378					12	8	2	0	0	0	0.31095	1	4869	4869		1.1933	0.39971	1	9500.4			17271	7	11444	11559	23242	23242					-0.00498904285404933
RGGRQEWTAC	10	Unmodified	_RGGRQEWTAC_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2743530273438	2	582.272364	1162.53017	0.38551	0.00022447	0.1986	0.00011564	0.58411	0.00034011	582.2728875150941	102.77	0.60096	102.77	102.63	103.23	0					82	40	3	0	0	0	0.46656	1	26488	26488		1.6526	0.32309	1	106610	+		17272	10502	11445	11560	23243	23243					-0.04458938976540594
RGHHPTPRPG	10	Unmodified	_RGHHPTPRPG_					0	0	0		ENST00000396388.2_1_19:54697066-54697171:+|nuORF	ENST00000396388.2_1_19:54697066-54697171:+|nuORF	ENST00000396388.2_1_19:54697066-54697171:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2966918945312	2	556.29703	1110.57951	-0.22731	-0.00012645	-0.010459	-5.8184E-06	-0.23777	-0.00013227	556.2966673460692	14.627	0.055999	14.627	14.611	14.667	0					10	6	2	0	0	0	0.4753	1	407	407		0	0	1	8590.7			17273	6341	11446	11561	23244	23244					0.028641370945251765
RGKGHLRETS	10	Unmodified	_RGKGHLRETS_					0	0	0		ENST00000409202.7_1_2:69053392-69053470:+|nuORF	ENST00000409202.7_1_2:69053392-69053470:+|nuORF	ENST00000409202.7_1_2:69053392-69053470:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8151245117188	2	570.815253	1139.61595	-0.42285	-0.00024137	0.12624	7.2058E-05	-0.29661	-0.00016931	570.8153520741205	16.088	0.34133	16.088	15.997	16.339	0					83	42	3	0	0	0	0.47318	1	656	656		0.40072	0	1	60682			17274	6391	11447	11562	23245	23245					0.051729692006119876
RGKLHYRR	8	Unmodified	_RGKLHYRR_					0	0	0		ENST00000534268.5_1_15:79237012-79237186:-|nuORF	ENST00000534268.5_1_15:79237012-79237186:-|nuORF	ENST00000534268.5_1_15:79237012-79237186:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3240966796875	2	543.325591	1084.63663	-0.096599	-5.2485E-05	-1.0207	-0.00055459	-1.1173	-0.00060707	543.3249208345624	30.827	0.27908	30.827	30.698	30.978	0					25	13	2	0	0	0	0.54097	1	4533	4533		0.69038	0	1	25290			17275	7040	11448	11563	23246	23246					0.09769604370899287
RGKLHYRR	8	Unmodified	_RGKLHYRR_					0	0	0		ENST00000534268.5_1_15:79237012-79237186:-|nuORF	ENST00000534268.5_1_15:79237012-79237186:-|nuORF	ENST00000534268.5_1_15:79237012-79237186:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.32470703125	2	543.325591	1084.63663	-0.020783	-1.1292E-05	-1.4233	-0.00077329	-1.444	-0.00078458	543.3248933081705	30.818	0.29438	30.891	30.752	31.046	0.07378					23	14	2	0	0	0	0.54097	1	4411	4411		0.69038	0	1	22974			17276	7040	11448	11563	23247	23247					0.09769604370899287
RGKPSAVAE	9	Unmodified	_RGKPSAVAE_					0	0	0			REV__ENST00000308488.10_1_11:77531838-77532048:-|nuORF	REV__ENST00000308488.10_1_11:77531838-77532048:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.7140808105469	2	457.756341	913.498129	-0.035665	-1.6326E-05	2.7859	0.0012753	2.7502	0.0012589	457.7557051837157	28.019	0.042191	28.019	27.983	28.026	0					4	2	2	0	0	0	0.25644	1	3710	3710		3.9444	0.66309	1	4314.7	+		17277	11366	11449	11564	23248	23248					0.03792016611942017
RGKTEAAIK	9	Unmodified	_RGKTEAAIK_					0	0	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2931823730469	2	487.293091	972.571629	0.40106	0.00019543	-0.026649	-1.2986E-05	0.37441	0.00018245	487.29292819697827	85.512	0.83881	85.537	85.358	86.197	0.025169					80	32	3	0	0	0	0.33849	1	20955	20955		1.6526	0.96225	1	285420			17278	2749	11450	11565	23249	23249					0.0842456505440623
RGLAGSLR	8	Unmodified	_RGLAGSLR_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8751220703125	2	415.253769	828.492984	-0.28884	-0.00011994	-0.025575	-1.062E-05	-0.31442	-0.00013056	415.2537116685462	28.843	0.35513	28.922	28.767	29.122	0.078287					35	25	2	0	0	0	0.3576	1	3842	3842		2.0598	0	1	14939			17279	2577	11451	11566	23250	23250					0.07187757539975337
RGLAGSLR	8	Unmodified	_RGLAGSLR_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	415.253769	828.492984	0.048644	2.0199E-05	-0.78428	-0.00032568	-0.73564	-0.00030548	415.25344220384886	28.886	0.32702	28.886	28.783	29.11	0	-0.01788	-0.00033776	NaN	2.0598	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24212			17280	2577	11451	11566							0.07187757539975337
RGLLCPAL	8	Unmodified	_RGLLCPAL_					0	0	0		UBQLN2|p.P525Lfs*71|1|0.5|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant	UBQLN2|p.P525Lfs*71|1|0.5|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant	UBQLN2|p.P525Lfs*71|1|0.5|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.7514953613281	2	421.749473	841.484393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.024	1	72.024	71.524	72.524	0								0	0	0	0.38822	1	17023	17023		2.5775	0	1				17281	13759	11452	11567	23251	23251					0.057310675791541144
RGMWRWCC	8	Unmodified	_RGMWRWCC_					0	0	0			REV__ENST00000574539.5_1_17:7534071-7534581:+|nuORF	REV__ENST00000574539.5_1_17:7534071-7534581:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7653198242188	2	549.233141	1096.45173	0.090048	4.9457E-05	-1.9193	-0.0010542	-1.8293	-0.0010047	549.7348098287641	33.411	0.1459	33.486	33.401	33.546	0.074322					6	4	2	0	0	0	0.3576	1	5203	5203		0.69038	0	1	16505	+		17282	12533	11453	11568	23252	23252					-0.09263786087012704
RGNHFFQF	8	Unmodified	_RGNHFFQF_					0	0	0			REV__IP6K2|p.D336*|1|0.44|ENSG00000068745|chr3:48688548-48688549|-/A|frameshift_variant	REV__IP6K2|p.D336*|1|0.44|ENSG00000068745|chr3:48688548-48688549|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7394409179688	2	526.756675	1051.4988	-0.14846	-7.8204E-05	1.4318	0.0007542	1.2833	0.000676	526.7572907866814	43.843	0.5175	43.843	43.663	44.18	0					22	17	2	0	0	0	0.35759	1	8400	8400		13.508	0	1	38611	+		17283	8133	11454	11569	23253	23253					-0.024891439483326394
RGNPALVF	8	Unmodified	_RGNPALVF_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.25128173828125	2	437.250695	872.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.861	1	44.949	44.449	45.449	0.08754								0	0	0	0.38822	1	8632	8632		5.7604	1.0044	1		+		17284	9330	11455	11570	23254	23254					0.045492393084600735
RGPGKFFFF	9	Unmodified	_RGPGKFFFF_					0	0	0		ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000533107.3_1_19:1799652-1806029:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2394409179688	2	551.795269	1101.57599	0.55919	0.00030856	0.73224	0.00040405	1.2914	0.0007126	551.7955474743065	62.98	0.92372	62.98	62.809	63.733	0					63	34	2	0	0	0	0.16944	1	14256	14256		30.637	7.4881	1	419890			17285	7036	11456	11571	23255	23255					0.029260742679980467
RGPGKFFFF	9	Unmodified	_RGPGKFFFF_					0	0	0		ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000533107.3_1_19:1799652-1806029:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2393188476562	2	551.795269	1101.57599	0.55079	0.00030392	0.54665	0.00030164	1.0974	0.00060557	551.7956005011562	62.88	0.92846	62.952	62.748	63.676	0.072701					75	37	4	0	0	0	0.16944	1	14120	14120		30.637	18.996	1	363030			17286	7036	11456	11571	23256	23256					0.029260742679980467
RGQFGWVSE	9	Unmodified	_RGQFGWVSE_					0	0	0		ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7381591796875	2	533.259248	1064.50394	0.55826	0.0002977	2.1993	0.0011728	2.7576	0.0014705	533.2598361552258	55.352	0.174	55.352	55.293	55.467	0					9	5	2	0	0	0	0.25699	1	11964	11964		3.5965	0.31518	1	47384			17287	876	11457	11572	23257	23257					-0.025728848763719725
RGQRAALP	8	Unmodified	_RGQRAALP_					0	0	0		ENST00000350796.7_1_7:6203761-6203953:-|nuORF	ENST00000350796.7_1_7:6203761-6203953:-|nuORF	ENST00000350796.7_1_7:6203761-6203953:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.75909423828125	2	434.759218	867.503883	0.73838	0.00032102	-1.3702	-0.00059573	-0.63187	-0.00027471	434.758704259634	85.241	0.44524	85.241	85.014	85.459	0					26	15	2	0	0	0	0.53817	1	21080	21080		2.5775	0	1	116690			17288	6107	11458	11573	23258	23258					0.0648315991426216
RGQRAALP	8	Unmodified	_RGQRAALP_					0	0	0		ENST00000350796.7_1_7:6203761-6203953:-|nuORF	ENST00000350796.7_1_7:6203761-6203953:-|nuORF	ENST00000350796.7_1_7:6203761-6203953:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	434.759218	867.503883	0.53999	0.00023477	-0.90656	-0.00039414	-0.36657	-0.00015937	434.75887096106305	85.252	0.43659	85.275	85.091	85.527	0.023125	0.017122	0.00020405	NaN	2.5775	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160400			17289	6107	11458	11573							0.0648315991426216
RGQRPPVLF	9	Unmodified	_RGQRPPVLF_					0	0	0		nc|ENSG00000183072|P52952-2|NKX2-5	nc|ENSG00000183072|P52952-2|NKX2-5	nc|ENSG00000183072|P52952-2|NKX2-5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7871704101562	2	535.3169	1068.61925	0.19972	0.00010691	2.714	0.0014529	2.9137	0.0015598	535.3186095282858	73.782	0.28999	73.782	73.63	73.92	0					15	9	2	0	0	0	0.25174	1	17533	17533		7.2892	0	1	62917			17290	7571	11459	11574	23259	23259					0.08768264045261276
RGQRPPVLF	9	Unmodified	_RGQRPPVLF_					0	0	0		nc|ENSG00000183072|P52952-2|NKX2-5	nc|ENSG00000183072|P52952-2|NKX2-5	nc|ENSG00000183072|P52952-2|NKX2-5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	535.3169	1068.61925	0.59324	0.00031757	1.5993	0.00085611	2.1925	0.0011737	535.3178266812986	73.67	0.25683	73.722	73.649	73.906	0.052574	-0.029794	-0.00075312	NaN	7.2892	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69910			17291	7571	11459	11574							0.08768264045261276
RGREAPLP	8	Unmodified	_RGREAPLP_					0	0	0			REV__nc|ENSG00000106003|Q8NES3-3|LFNG	REV__nc|ENSG00000106003|Q8NES3-3|LFNG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	448.2590637207031	2	448.259051	894.503549	0.4655	0.00020866	-0.32859	-0.0001473	0.1369	6.1368E-05	448.2588057174568	84.81	0.69587	84.833	84.595	85.291	0.023132					86	32	4	0	0	0	0.53858	1	20826	20826		2.3027	0	1	1870200	+		17292	8563	11460	11575	23260	23260					0.052077401944075064
RGRLLRLPEE	10	Unmodified	_RGRLLRLPEE_					0	0	0		ENST00000394202.8_1_1:95369066-95392622:-|nuORF	ENST00000394202.8_1_1:95369066-95392622:-|nuORF	ENST00000394202.8_1_1:95369066-95392622:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8693237304688	2	619.870028	1237.7255	-0.25025	-0.00015512	-0.5582	-0.00034601	-0.80845	-0.00050113	619.8694370999674	86.96	0.72298	86.96	86.71	87.433	0					78	30	3	0	0	0	0.45794	1	21634	21634		3.2813	0.78282	1	634050			17293	6323	11461	11576	23261	23261					0.11614974819917734
RGRPPRLYL	9	Unmodified	_RGRPPRLYL_					0	0	0			REV__ENST00000446789.2_1_13:113621919-113623112:-|nuORF	REV__ENST00000446789.2_1_13:113621919-113623112:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3582153320312	2	564.343449	1126.67235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.31	1	114.32	113.82	114.82	0.013336								0	0	0	0.28631	1	29103	29103		1.8442	0.19162	1		+		17294	11909	11462	11577	23262	23262					0.11407641827918269
RGRRGGVRPR	10	Unmodified	_RGRRGGVRPR_					0	0	0		ENST00000355280.10_1_17:4736705-4736843:+|nuORF	ENST00000355280.10_1_17:4736705-4736843:+|nuORF	ENST00000355280.10_1_17:4736705-4736843:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.85888671875	2	583.858121	1165.70169	0.76007	0.00044377	0.93129	0.00054374	1.6914	0.00098751	583.8585299374467	92.625	0.78137	92.625	92.32	93.101	0					70	29	3	0	0	0	0.46746	1	23329	23329		1.4819	0	1	403050			17295	6120	11463	11578	23263	23263					0.1254659889677896
RGRRGGVRPR	10	Unmodified	_RGRRGGVRPR_					0	0	0		ENST00000355280.10_1_17:4736705-4736843:+|nuORF	ENST00000355280.10_1_17:4736705-4736843:+|nuORF	ENST00000355280.10_1_17:4736705-4736843:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8588256835938	2	583.858121	1165.70169	0.85545	0.00049946	0.652	0.00038067	1.5074	0.00088014	583.8583951760526	92.558	0.77689	92.594	92.34	93.117	0.03653					67	28	3	0	0	0	0.46746	1	23116	23116		1.4819	0	1	358890			17296	6120	11463	11578	23264	23264					0.1254659889677896
RGRRGLRPSR	10	Unmodified	_RGRRGLRPSR_					0	0	0			REV__ENST00000440884.7_1_14:103852062-103852221:+|nuORF	REV__ENST00000440884.7_1_14:103852062-103852221:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8720092773438	2	605.871228	1209.7279	0.75783	0.00045915	0.97751	0.00059224	1.7353	0.0010514	605.8717221981537	94.082	0.57246	94.12	93.972	94.544	0.038086					63	26	3	0	0	0	0.46083	1	23611	23611		2.7352	1.0826	1	301110	+		17297	11884	11464	11579	23265	23265					0.13142868068234748
RGRVYRRRSRP	11	Unmodified	_RGRVYRRRSRP_					0	0	0			REV__ENSG00000166851|ENST00000300093|PLK1	REV__ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.9587707519531	3	486.95902	1457.85523	0.10259	4.9955E-05	-0.03275	-1.5948E-05	0.069836	3.4007E-05	486.9589140035811	95.308	0.8372	95.308	94.63	95.467	0					59	33	2	0	0	0	0.4185	1	24029	24029		0.094841	0	1	184200	+		17298	10095	11465	11580	23266	23266					0.1446158894243581
RGRVYRRRSRP	11	Unmodified	_RGRVYRRRSRP_					0	0	0			REV__ENSG00000166851|ENST00000300093|PLK1	REV__ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.95855712890625	3	486.95902	1457.85523	0.04208	2.0491E-05	0.017006	8.2815E-06	0.059086	2.8773E-05	486.95884626131755	95.167	0.73998	95.205	94.668	95.407	0.038872					70	30	3	0	0	0	0.4185	1	23900	23900		0.094841	0	1	172160	+		17299	10095	11465	11580	23267	23267					0.1446158894243581
RGRVYRRRSRP	11	Unmodified	_RGRVYRRRSRP_					0	0	0			REV__ENSG00000166851|ENST00000300093|PLK1	REV__ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.9591979980469	3	486.95902	1457.85523	0.28813	0.00014031	-0.11073	-5.3922E-05	0.1774	8.6385E-05	486.9588551046137	96.81	1.8447	96.85	96.136	97.981	0.039772					130	94	2	0	0	0	0.41693	1	24434	24434		0.45452	0.45452	1	432080	+		17300	10095	11465	11580	23268	23268					0.1446158894243581
RGSHDNGP	8	Unmodified	_RGSHDNGP_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-2|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-2|CACNA1I	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.1913757324219	2	420.191365	838.368178	0.17423	7.3208E-05	0.049066	2.0617E-05	0.22329	9.3826E-05	420.1913657841111	88.125	1.0689	88.155	87.906	88.975	0.030037					79	41	2	0	0	0	0.53926	1	21743	21743		1.8442	1.0506	1	245080	+		17301	8385	11466	11581	23269	23269					-0.057471596671916814
RGSPQLHRH	9	Unmodified	_RGSPQLHRH_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7950439453125	2	544.29703	1086.57951	-0.22436	-0.00012212	-0.00035634	-1.9395E-07	-0.22471	-0.00012231	544.2970686902668	42.399	0.78703	42.488	42.072	42.86	0.089764					39	29	2	0	0	0	0.25875	1	7836	7836		1.8442	0	1	57054	+		17302	10238	11467	11582	23270	23270					0.039681370945800154
RGSRRNPHGDH	11	Unmodified	_RGSRRNPHGDH_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.8217163085938	2	644.821932	1287.62931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.893	1	26.98	26.48	27.48	0.0867								0	0	0	0.34212	1	3261	3261		0	0	1				17303	1829	11468	11583	23271	23271					-0.0029977996744037227
RGTKIKDLS	9	Unmodified	_RGTKIKDLS_					0	0	0		ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.3061828613281	2	509.306198	1016.59784	0.20702	0.00010544	-0.092455	-4.7088E-05	0.11457	5.835E-05	509.30600103146077	87.415	0.89265	87.442	87.215	88.108	0.027573					82	33	4	0	0	0	0.29576	1	21692	21692		7.2892	7.2892	1	415600			17304	6382	11469	11584	23272	23272					0.09020834225896124
RGTKIKDLS	9	Unmodified	_RGTKIKDLS_					0	0	0		ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	ENST00000407371.1_1_6:90131981-90132104:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	509.306198	1016.59784	0.33868	0.00017249	-0.13792	-7.0243E-05	0.20076	0.00010225	509.30601231261426	87.492	0.90211	87.492	87.211	88.113	0	0.024793	-2.608E-05	NaN	7.2892	79	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438270			17305	6382	11469	11584							0.09020834225896124
RGWDQEPAR	9	Unmodified	_RGWDQEPAR_					0	0	0		nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR	nc|ENSG00000105699|Q86X29-5|LSR	nc|ENSG00000105699|Q86X29-5|LSR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2841186523438	2	557.773054	1113.53155	0.78332	0.00043692	2.0391	0.0011374	2.8224	0.0015743	557.7753194572381	97.373	0.11249	97.414	97.36	97.473	0.040855					6	5	2	0	0	0	0.25281	1	24597	24597		6.7232	0.99131	1	31228			17306	1485	11470	11585	23273	23273					-0.020669816161444032
RHANISAYR	9	Unmodified	_RHANISAYR_					0	0	0			REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2257080078125	2	544.291414	1086.56827	0.064128	3.4904E-05	-1.7479	-0.00095139	-1.6838	-0.00091648	544.2905051009358	34.648	0.47694	34.648	34.377	34.854	0					34	18	3	0	0	0	0.25845	1	5730	5730		2.0598	0	1	28195	+		17307	9025	11471	11586	23274	23274					0.028453150003997507
RHANISAYR	9	Unmodified	_RHANISAYR_					0	0	0			REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	544.291414	1086.56827	0.1171	6.3736E-05	-1.8147	-0.00098775	-1.6976	-0.00092401	544.290380077638	34.596	0.39959	34.672	34.425	34.824	0.076244	0.011736	-3.6297E-05	NaN	0.52476	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37708	+		17308	9025	11471	11586							0.028453150003997507
RHCWEVET	8	Unmodified	_RHCWEVET_					0	0	0		ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5-2|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39	ENSG00000204618|ENST00000244360|RNF39	ENSG00000204618|ENST00000244360|RNF39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.236083984375	2	530.237458	1058.46036	0.30299	0.00016066	-1.3086	-0.00069388	-1.0056	-0.00053322	530.2366313400343	36.877	0.49347	36.959	36.717	37.211	0.081715					35	19	2	0	0	0	0.53423	1	6297	6297		5.2307	1.2863	1	153400			17309	5485	11472	11587	23275	23275					-0.0665281764518113
RHDLLNKFY	9	Unmodified	_RHDLLNKFY_					0	0	0		ENST00000565298.5_1_16:1574507-1576156:-|nuORF;nc|ENSG00000187535|Q96RY7-2|IFT140;ENSG00000187535|ENST00000426508|IFT140	ENST00000565298.5_1_16:1574507-1576156:-|nuORF	ENST00000565298.5_1_16:1574507-1576156:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3248291015625	2	603.324922	1204.63529	0.31298	0.00018883	0.018179	1.0968E-05	0.33116	0.0001998	603.3247812275242	34.558	0.59555	34.634	34.445	35.04	0.076244					61	25	3	0	0	0	0.34704	1	5617	5617		0.52476	0	1	144490			17310	5123	11473	11588	23276	23276					0.04115925491510097
RHELEIFEY	9	Unmodified	_RHELEIFEY_					0	0	0			REV__tr|U7SGK8|U7SGK8_FUSNUExonucleaseSbcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02224PE=4SV=1	REV__tr|U7SGK8|U7SGK8_FUSNUExonucleaseSbcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02224PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3038940429688	2	618.306395	1234.59824	-0.3132	-0.00019366	-2.8034	-0.0017334	-3.1166	-0.001927	618.3046258455596	39.579	0.28058	39.668	39.557	39.837	0.088562					16	9	2	0	0	0	0.29576	1	7060	7060		7.2892	1.9923	1	31996	+		17311	13045	11474	11589	23277	23277					-0.009677908449020833
RHFLQRTW	8	Unmodified	_RHFLQRTW_					0	0	0			REV__DNAH5|p.A630T|1|0.2|ENSG00000039139|chr5:13901416-13901416|C/T|missense_variant	REV__DNAH5|p.A630T|1|0.2|ENSG00000039139|chr5:13901416-13901416|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3134765625	2	572.312149	1142.60975	-0.15296	-8.7542E-05	2.0429	0.0011692	1.89	0.0010817	572.3135430162858	30.219	0.36544	30.219	30.055	30.42	0					23	17	2	0	0	0	0.54097	1	4358	4358		0.69038	0	1	19205	+		17312	7886	11475	11590	23278	23278					0.04414495759738202
RHGPAAPRY	9	Unmodified	_RHGPAAPRY_					0	0	0			REV__ENST00000313269.5_1_8:145064266-145064371:+|nuORF	REV__ENST00000313269.5_1_8:145064266-145064371:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7750244140625	2	512.7754	1023.53625	0.054695	2.8046E-05	-1.3683	-0.00070164	-1.3136	-0.00067359	512.7746665532776	22.402	0.28136	22.504	22.38	22.662	0.10178					44	26	2	0	0	0	0.32112	1	1999	1999		3.9444	1.6417	1	31967	+		17313	11378	11476	11591	23279	23279					0.025419473172632934
RHGPAAPRY	9	Unmodified	_RHGPAAPRY_					0	0	0			REV__ENST00000313269.5_1_8:145064266-145064371:+|nuORF	REV__ENST00000313269.5_1_8:145064266-145064371:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.7754	1023.53625	-0.24031	-0.00012323	-1.3808	-0.00070802	-1.6211	-0.00083125	512.7745446218383	22.604	0.26667	22.604	22.44	22.707	0	0.050095	-9.871E-06	NaN	3.9444	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21055	+		17314	11378	11476	11591							0.025419473172632934
RHHLYRIG	8	Unmodified	_RHHLYRIG_					0	0	0			REV__ENSG00000132518|ENST00000254854|GUCY2D	REV__ENSG00000132518|ENST00000254854|GUCY2D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2974853515625	2	526.299042	1050.58353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.11	1	118.12	117.62	118.62	0.013062								0	0	0	0.38822	1	29803	29803		0.69038	0	1		+		17315	9120	11477	11592	23280	23280					0.06026226588278405
RHILPNLLM	9	Unmodified	_RHILPNLLM_					0	0	0			REV__ENST00000267068.5_2_13:33110836-33110986:-|nuORF	REV__ENST00000267068.5_2_13:33110836-33110986:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.830078125	2	553.828786	1105.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.637	1	83.637	83.137	84.137	0								0	0	0	0.27427	1	20570	20570		4.3292	0	1		+		17316	11265	11478	11593	23281	23281					0.09442361487435846
RHKITKRGQ	9	Unmodified	_RHKITKRGQ_					0	0	0		nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3438720703125	2	562.343981	1122.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.128	1	84.15	83.65	84.65	0.021744								0	0	0	0.28631	1	20559	20559		1.8442	0.19162	1				17317	7628	11479	11594	23282	23282					0.11697856196815337
RHLHKENQVL	10	Unmodified	_RHLHKENQVL_					0	0	0		ENST00000609928.5_3_1:179821820-179834609:-|nuORF	ENST00000609928.5_3_1:179821820-179834609:-|nuORF	ENST00000609928.5_3_1:179821820-179834609:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.8256225585938	2	637.359828	1272.7051	-0.16383	-0.00010442	-0.0044278	-2.8221E-06	-0.16825	-0.00010724	637.3600859596933	40.462	0.36564	40.551	40.378	40.743	0.089645					18	13	2	0	0	0	0.31853	1	7298	7298		0.40072	0	1	22716			17318	7330	11480	11595	23283	23283					0.07965804160107837
RHLLGLLLIA	10	Unmodified	_RHLLGLLLIA_					0	0	0		ENSG00000005469|ENST00000331536|CROT;nc|ENSG00000005469|Q9UKG9-3|CROT	ENSG00000005469|ENST00000331536|CROT	ENSG00000005469|ENST00000331536|CROT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.874267578125	2	559.874051	1117.73355	0.42101	0.00023571	-0.097614	-5.4651E-05	0.3234	0.00018106	559.8740536553955	111.77	0.059235	111.79	111.75	111.81	0.014595					12	8	2	0	0	0	0.43972	1	28491	28491		6.7232	0.51738	1	869070			17319	351	11481	11596	23284	23284					0.17939153807401453
RHLQDLVL	8	Unmodified	_RHLQDLVL_					0	0	0		ENST00000443642.1_1_1:155288166-155291435:-|nuORF;ENST00000446880.5_1_1:155288166-155291089:-|nuORF	ENST00000443642.1_1_1:155288166-155291435:-|nuORF	ENST00000443642.1_1_1:155288166-155291435:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2958068847656	2	497.295633	992.576714	0.54176	0.00026941	-0.018329	-9.1151E-06	0.52343	0.0002603	497.2955298850556	100.97	0.91747	101.02	100.66	101.58	0.042839					95	55	3	0	0	0	0.53771	1	25730	25730		2.8892	0	1	772740			17320	6532	11482	11597	23285	23285					0.08012868917023752
RHMIDWRYQL	10	Unmodified	_RHMIDWRYQL_					0	0	0			REV__ENSG00000133134|ENST00000372677|BEX2	REV__ENSG00000133134|ENST00000372677|BEX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7816467285156	3	473.243434	1416.70847	-0.31643	-0.00014975	0.15826	7.4896E-05	-0.15817	-7.4854E-05	473.2435604661226	33.268	1.4367	33.268	32.548	33.984	0					93	58	3	0	0	0	0.31853	1	5282	5282		0.62683	0.17231	1	26773	+		17321	9144	11483	11598	23286	23286					0.016787309424898922
RHMIDWRYQL	10	Unmodified	_RHMIDWRYQL_					0	0	0			REV__ENSG00000133134|ENST00000372677|BEX2	REV__ENSG00000133134|ENST00000372677|BEX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2440490722656	3	473.243434	1416.70847	-0.3094	-0.00014642	0.45547	0.00021555	0.14607	6.9125E-05	473.24378504062406	33.099	0.98873	33.173	32.837	33.826	0.074322					85	39	3	0	0	0	0.47232	1	5059	5059		0.56317	0.10865	1	50835	+		17322	9144	11483	11598	23287	23287					0.016787309424898922
RHNNVDIL	8	Unmodified	_RHNNVDIL_					0	0	0		CNNM1|p.I475N|1|0.3|ENSG00000119946|chr10:99330811-99330811|T/A|missense_variant	CNNM1|p.I475N|1|0.3|ENSG00000119946|chr10:99330811-99330811|T/A|missense_variant	CNNM1|p.I475N|1|0.3|ENSG00000119946|chr10:99330811-99330811|T/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7685241699219	2	490.76724	979.519927	0.39924	0.00019593	2.9103	0.0014283	3.3096	0.0016242	490.7682833415886	101.67	0.16113	101.72	101.63	101.79	0.042656					15	12	2	0	0	0	0.51415	1	25916	25916		10.824	0.75	1	32789			17323	203	11484	11599	23288	23288					0.029348213605089768
RHQLWMVME	9	Unmodified	_RHQLWMVME_					0	0	0		nc|ENSG00000123572|Q7Z2Y5-3|NRK;ENSG00000123572|ENST00000243300|NRK	nc|ENSG00000123572|Q7Z2Y5-3|NRK	nc|ENSG00000123572|Q7Z2Y5-3|NRK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.53466796875	3	410.535449	1228.58452	-0.26716	-0.00010968	-0.82506	-0.00033872	-1.0922	-0.0004484	410.53511770728267	26.226	0.27634	26.318	26.159	26.435	0.091509					42	25	2	0	0	0	0.34704	1	3054	3054		0.23584	0.095952	1	31627			17324	2224	11485	11600	23289	23289					-0.020630631493304463
RHRGLRPRR	9	Unmodified	_RHRGLRPRR_					0	0	0		ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3140869140625	2	602.373938	1202.73332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.15	1	106.18	105.68	106.68	0.029739								0	0	0	0.2927	1	27172	27172		0.52476	0	1				17325	4036	11486	11601	23290	23290					0.1400659165074103
RHRGLRPRR	9	Unmodified	_RHRGLRPRR_					0	0	0		ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3134155273438	2	602.373938	1202.73332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.36	1	106.38	105.88	106.88	0.029739								0	0	0	0.28527	1	27228	27228		2.0598	0	1				17326	4036	11486	11601	23291	23291					0.1400659165074103
RHRHSLVP	8	Unmodified	_RHRHSLVP_					0	0	0			REV__ENSG00000183671|ENST00000621141|CMKLR2	REV__ENSG00000183671|ENST00000621141|CMKLR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2907409667969	2	501.291217	1000.56788	0.3181	0.00015946	-1.126	-0.00056445	-0.80788	-0.00040498	501.290516632223	83.896	0.70628	83.918	83.589	84.295	0.021751					56	25	3	0	0	0	0.53494	1	20465	20465		4.756	0	1	304960	+		17327	10605	11487	11602	23292	23292					0.06761940071226036
RHRKWYLLI	9	Unmodified	_RHRKWYLLI_					0	0	0			REV__ENSG00000091972|ENST00000315711|CD200	REV__ENSG00000091972|ENST00000315711|CD200	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.8851928710938	2	642.888024	1283.7615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.268	1	40.358	39.858	40.858	0.089645								0	0	0	0.2927	1	7247	7247		0.52476	0.066424	1		+		17328	8326	11488	11603	23293	23293					0.13096476787450229
RHRLLLHF	8	Unmodified	_RHRLLLHF_					0	0	0			REV__ENST00000292566.3_1_7:102100189-102105179:-|nuORF	REV__ENST00000292566.3_1_7:102100189-102105179:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3306884765625	2	546.332885	1090.65122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.457	1	16.535	16.035	17.035	0.077806								0	0	0	0.38822	1	666	666		0.79363	0	1		+		17329	11323	11489	11604	23294	23294					0.10951676519061948
RHRLQRRQ	8	Unmodified	_RHRLQRRQ_					0	0	0		nc|ENSG00000132821|Q96N03-3|VSTM2L	nc|ENSG00000132821|Q96N03-3|VSTM2L	nc|ENSG00000132821|Q96N03-3|VSTM2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.3455810546875	2	575.344846	1148.67514	0.5499	0.00031638	0.88006	0.00050634	1.43	0.00082272	575.3452551411871	92.589	0.87337	92.625	92.286	93.159	0.03653					86	32	4	0	0	0	0.53494	1	23074	23074		4.756	0.81161	1	598240			17330	7504	11490	11605	23295	23295					0.10674910005445781
RHSFPLPL	8	Unmodified	_RHSFPLPL_					0	0	0		ENST00000526751.5_1_10:73975537-73975624:-|nuORF;ENST00000524829.5_1_10:73973024-73975970:-|nuORF;ENST00000492502.2_1_10:73973024-73975624:-|nuORF	ENST00000526751.5_1_10:73975537-73975624:-|nuORF	ENST00000526751.5_1_10:73975537-73975624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7789001464844	2	483.779619	965.544686	0.12703	6.1453E-05	-1.0375	-0.00050191	-0.91046	-0.00044046	483.77890644805245	74.879	0.5538	74.925	74.591	75.144	0.046051					31	19	2	0	0	0	0.53118	1	17782	17782		7.2892	1.5288	1	182470			17331	6814	11491	11606	23296	23296					0.06053501233895986
RHSGVSYQEI	10	Unmodified	_RHSGVSYQEI_					0	0	0			REV__ENST00000433355.6_1_6:146231577-146267398:-|nuORF	REV__ENST00000433355.6_1_6:146231577-146267398:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.2914428710938	2	588.293819	1174.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.98	1	100.98	100.48	101.48	0								0	0	0	0.33805	1	25844	25844		2.4985	0.43874	1		+		17332	9541	11492	11607	23297	23297					-0.007218456474902268
RHSKALKLYKE	11	Unmodified	_RHSKALKLYKE_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155932320-155932747:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.90460205078125	3	458.273499	1371.79867	0.022959	1.0522E-05	2.7226	0.0012477	2.7455	0.0012582	458.60896912963864	49.293	0.40593	49.37	49.106	49.512	0.076607					18	14	2	0	0	0	0.31089	1	9965	9965		2.6312	0.88896	1	49284			17333	1963	11493	11608	23298	23298					0.12764103542531302
RHSYGPRVMH	10	Unmodified	_RHSYGPRVMH_					0	0	0			REV__nc|ENSG00000102445|Q9H714-3|RUBCNL	REV__nc|ENSG00000102445|Q9H714-3|RUBCNL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.7003784179688	2	620.311823	1238.60909	-0.015728	-9.756E-06	3.1665	0.0019642	3.1508	0.0019545	620.3139736310645	57.971	0.30885	58.039	57.825	58.134	0.068371					26	11	3	0	0	0	0.46827	1	12564	12564		1.3295	0.72803	1	184540	+		17334	8451	11494	11609	23299	23299					-0.0006666695162493852
RIARPVYCRL	10	Unmodified	_RIARPVYCRL_					0	0	0			REV__ENST00000262395.9_1_17:27076744-27076957:+|nuORF	REV__ENST00000262395.9_1_17:27076744-27076957:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.862548828125	2	623.863692	1245.71283	-0.13963	-8.7111E-05	-2.421	-0.0015104	-2.5606	-0.0015975	623.8620518780594	43.517	0.8677	43.606	43.162	44.029	0.088924					57	31	3	0	0	0	0.45632	1	8212	8212		3.5965	0.60125	1	60879	+		17335	11237	11495	11610	23300	23300					0.09980240156050968
RIARPVYCRL	10	Unmodified	_RIARPVYCRL_					0	0	0			REV__ENST00000262395.9_1_17:27076744-27076957:+|nuORF	REV__ENST00000262395.9_1_17:27076744-27076957:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	623.863692	1245.71283	-0.41784	-0.00026067	-2.5772	-0.0016078	-2.995	-0.0018685	623.8620414439902	43.928	0.2621	43.928	43.801	44.063	0	0.16104	-0.00014438	NaN	3.5965	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31969	+		17336	11237	11495	11610							0.09980240156050968
RIEDTSRCDE	10	Unmodified	_RIEDTSRCDE_					0	0	0			REV__nc|ENSG00000180116|Q86WS4-3|REDIC1	REV__nc|ENSG00000180116|Q86WS4-3|REDIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.5178527832031	3	408.515548	1222.52481	0.17424	7.1181E-05	-1.1253	-0.00045971	-0.95108	-0.00038853	408.5149118916418	75.864	0.22747	75.908	75.766	75.994	0.044037					34	17	4	0	0	0	0.44496	1	18034	18034		3.0723	0	1	2930200	+		17337	10500	11496	11611	23301	23301					-0.07754707349704404
RIGHFFFW	8	Unmodified	_RIGHFFFW_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA;ENST00000454360.1_1_22:17054334-17055434:+|nuORF	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2508544921875	2	555.287611	1108.56067	0.62228	0.00034555	-0.21832	-0.00012123	0.40396	0.00022432	555.2876492748039	84.105	0.2849	84.127	84.01	84.295	0.021744					14	10	2	0	0	0	0.3576	1	20600	20600		6.3541	0	1	72327			17338	2166	11497	11612	23302	23302					0.010732074707902939
RIGRRCCCS	9	Unmodified	_RIGRRCCCS_					0	0	0			REV__ENST00000412397.2_1_1:998483-999668:+|nuORF	REV__ENST00000412397.2_1_1:998483-999668:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.1234130859375	2	527.24678	1052.47901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.902	1	99.902	99.402	100.4	0								0	0	0	0.28527	1	25516	25516		2.0598	1.2661	1		+		17339	11780	11498	11613	23303	23303					-0.045133025466384424
RILDGKRIQY	10	Unmodified	_RILDGKRIQY_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.2507629394531	3	421.250695	1260.73025	-0.15279	-6.4364E-05	0.12765	5.3772E-05	-0.025144	-1.0592E-05	421.2506504119449	33.611	0.6367	33.685	33.479	34.116	0.074322					67	26	3	0	0	0	0.43573	3	5243	5243;5287;5336		7.4771	3.0709	1	125630			17340	3116	11499	11614	23304;23305;23306	23304					0.11031858962724073
RILDGKRIQY	10	Unmodified	_RILDGKRIQY_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	421.250695	1260.73025	0.15039	6.3353E-05	-0.18184	-7.6601E-05	-0.03145	-1.3248E-05	421.25043235956053	33.711	1.0309	33.711	33.223	34.254	0	0.012924	-0.00024535	NaN	7.4771	61	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76854			17341	3116	11499	11614							0.11031858962724073
RILIALYL	8	Unmodified	_RILIALYL_					0	0	0			REV__ENST00000367334.9_1_1:201104596-201104782:-|nuORF	REV__ENST00000367334.9_1_1:201104596-201104782:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7426452636719	2	487.823495	973.632438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.139	1	27.139	26.639	27.639	0								0	0	0	0.38822	1	3461	3461		0	0	1		+		17342	11560	11500	11615	23307	23307					0.144567021046214
RIPLKNIYRL	10	Unmodified	_RIPLKNIYRL_					0	0	0		PLCB1|p.A884Qfs*55|1|0.06|ENSG00000182621|chr20:8757158-8757159|-/CCACAGCCAG|frameshift_variant;nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1	PLCB1|p.A884Qfs*55|1|0.06|ENSG00000182621|chr20:8757158-8757159|-/CCACAGCCAG|frameshift_variant	PLCB1|p.A884Qfs*55|1|0.06|ENSG00000182621|chr20:8757158-8757159|-/CCACAGCCAG|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.4044189453125	2	643.408789	1284.80303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.51	1	101.51	101.01	102.01	0								0	0	0	0.33984	1	26006	26006		0.40072	0	1				17343	4884	11501	11616	23308	23308					0.17201612756116447
RIREAAPSI	9	Unmodified	_RIREAAPSI_					0	0	0			REV__SLC4A4|p.V138Wfs*24|1|0.08|ENSG00000080493|chr4:71349929-71349929|A/-|frameshift_variant	REV__SLC4A4|p.V138Wfs*24|1|0.08|ENSG00000080493|chr4:71349929-71349929|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8000183105469	2	506.79854	1011.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.582	1	85.582	85.082	86.082	0								0	0	0	0.28724	1	21161	21161		1.6526	0.85899	1		+		17344	8227	11502	11617	23309	23309					0.07719967428693053
RIRERFWP	8	Unmodified	_RIRERFWP_					0	0	0			REV__ENST00000510379.1_1_4:148653338-148778808:+|nuORF	REV__ENST00000510379.1_1_4:148653338-148778808:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.2765502929688	2	580.327799	1158.64105	0.48935	0.00028398	-2.3116	-0.0013415	-1.8222	-0.0010575	580.3261825651985	52.68	0.57664	52.747	52.438	53.015	0.067169					26	22	2	0	0	0	0.3576	1	10908	10908		2.8892	0.58649	1	89580	+		17345	8157	11503	11618	23310	23310					0.06807068793818871
RIRERFWP	8	Unmodified	_RIRERFWP_					0	0	0			REV__ENST00000510379.1_1_4:148653338-148778808:+|nuORF	REV__ENST00000510379.1_1_4:148653338-148778808:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	580.327799	1158.64105	0.28498	0.00016538	-1.6762	-0.00097274	-1.3912	-0.00080736	580.3265144891707	52.726	0.37099	52.726	52.527	52.898	0	-0.010267	0.00024189	NaN	2.8892	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76176	+		17346	8157	11503	11618							0.06807068793818871
RIRGSQLL	8	Unmodified	_RIRGSQLL_					0	0	0			REV__nc|ENSG00000124749|Q96P44-3|COL21A1	REV__nc|ENSG00000124749|Q96P44-3|COL21A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7957458496094	2	471.795801	941.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.933	1	98.933	98.433	99.433	0								0	0	0	0.38822	1	25221	25221		2.5775	0	1		+		17347	8960	11504	11619	23311	23311					0.10392288636899139
RISDFHETY	9	Unmodified	_RISDFHETY_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2761840820312	2	584.275095	1166.53564	0.41356	0.00024163	-0.21159	-0.00012362	0.20197	0.00011801	584.2749427710686	34.795	0.20425	34.871	34.753	34.957	0.076244					11	7	2	0	0	0	0.31086	1	5620	5620		5.2969	2.7984	1	20154			17348	4919	11505	11620	23312	23312					-0.04096936913083482
RISDFHETY	9	Unmodified	_RISDFHETY_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2757568359375	2	584.275095	1166.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.914	1	34.99	34.49	35.49	0.076244								0	0	0	0.28724	1	5641	5641		1.6526	0.17072	1				17349	4919	11505	11620	23313	23313					-0.04096936913083482
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.81396484375	2	528.813659	1055.61277	0.027936	1.4773E-05	0.40513	0.00021424	0.43306	0.00022901	528.8138173984202	72.99	1.3178	72.99	72.631	73.949	0					120	46	4	0	0	0	0.0072857	6	17318	17274;17318;17362;17405;17475;17541		75.571	49.302	1	2489600			17350	494	11506	11621	23314;23315;23316;23317;23318;23319	23315					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8138427734375	2	528.813659	1055.61277	0.14666	7.7554E-05	0.29152	0.00015416	0.43817	0.00023171	528.8137731570303	72.907	1.1287	72.96	72.623	73.752	0.052567					105	41	4	0	0	0	0.0072857	6	17133	17089;17133;17176;17221;17278;17333		75.571	48.687	1	2226800			17351	494	11506	11621	23320;23321;23322;23323;23324;23325	23321					0.08718326093890028
RIYERPVE	8	Unmodified	_RIYERPVE_					0	0	0			REV__nc|ENSG00000164934|Q9NV06-2|DCAF13	REV__nc|ENSG00000164934|Q9NV06-2|DCAF13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2923583984375	2	531.290548	1060.56654	0.53106	0.00028215	1.9552	0.0010388	2.4863	0.0013209	531.2915068277789	63.845	0.89291	63.845	63.592	64.485	0					47	31	2	0	0	0	0.49148	1	14523	14523		13.906	0	1	235940	+		17352	10013	11507	11622	23326	23326					0.03868261191814781
RIYYDYNYS	9	Unmodified	_RIYYDYNYS_					0	0	0			REV__ENSG00000143196|ENST00000367817|DPT	REV__ENSG00000143196|ENST00000367817|DPT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.7822265625	2	628.782753	1255.55095	-0.27547	-0.00017321	-0.5388	-0.00033879	-0.81428	-0.000512	628.7821803303922	41.104	0.27669	41.194	41.088	41.365	0.089645					13	9	2	0	0	0	0.34704	1	7542	7542		0.52476	0	1	40428	+		17353	9455	11508	11623	23327	23327					-0.06660070115890449
RIYYDYNYS	9	Unmodified	_RIYYDYNYS_					0	0	0			REV__ENSG00000143196|ENST00000367817|DPT	REV__ENSG00000143196|ENST00000367817|DPT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	628.782753	1255.55095	-0.60859	-0.00038267	0.1148	7.2186E-05	-0.49379	-0.00031048	628.7825988868459	41.204	0.27766	41.204	41.046	41.324	0	0.0051112	0.00055022	NaN	0.52476	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31810	+		17354	9455	11508	11623							-0.06660070115890449
RIYYDYNYS	9	Unmodified	_RIYYDYNYS_					0	0	0			REV__ENSG00000143196|ENST00000367817|DPT	REV__ENSG00000143196|ENST00000367817|DPT	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	628.782753	1255.55095	-0.27547	-0.00017321	-0.5388	-0.00033879	-0.81428	-0.000512	628.7821803303922	41.104	0.27669	41.194	41.088	41.365	0.089645	-0.0051112	-0.00027174	NaN	0.52476	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40428	+		17355	9455	11508	11623							-0.06660070115890449
RKAKAKLLF	9	Unmodified	_RKAKAKLLF_					0	0	0			REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF	REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.861083984375	2	537.860944	1073.70733	0.47624	0.00025615	-0.21521	-0.00011575	0.26103	0.0001404	537.8607245322585	109.38	0.48152	109.4	109.15	109.64	0.019402					90	54	2	0	0	0	0.3354	1	27979	27979		2.0598	0	1	734840	+		17356	11047	11509	11624	23328	23328					0.17342884635877454
RKAKVLLVV	9	Unmodified	_RKAKVLLVV_					0	0	0		nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.353515625	2	513.363319	1024.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.69	1	104.69	104.19	105.19	0								0	0	0	0.29233	1	26946	26946		0.6015	0	1				17357	3648	11510	11625	23329	23329					0.2007176877866641
RKCKCTIML	9	Unmodified	_RKCKCTIML_					0	0	0		ENST00000416701.6_1_9:95726506-95726539:+|nuORF	ENST00000416701.6_1_9:95726506-95726539:+|nuORF	ENST00000416701.6_1_9:95726506-95726539:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2957153320312	2	548.295407	1094.57626	0.088136	4.8324E-05	-0.058725	-3.2199E-05	0.029411	1.6126E-05	548.295265306536	44.487	0.4916	44.575	44.334	44.825	0.087543					40	17	3	0	0	0	0.33704	1	8589	8589		1.8442	0	1	153120			17358	6430	11511	11626	23330	23330					0.03275666609670225
RKEERVRKRN	10	Unmodified	_RKEERVRKRN_					0	0	0			REV__ENST00000343796.6_1_5:142814714-142814924:-|nuORF	REV__ENST00000343796.6_1_5:142814714-142814924:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.6083984375	3	457.607764	1369.80146	0.67482	0.0003088	0.46964	0.00021491	1.1445	0.00052372	457.60781129591237	92.505	1.5347	92.505	91.927	93.462	0					141	58	3	0	0	0	0.47119	1	23306	23306		0.77653	0	1	222480	+		17359	11475	11512	11627	23331	23331					0.13135371720068179
RKEVQNQLV	9	Unmodified	_RKEVQNQLV_					0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.32275390625	2	557.32238	1112.63021	-0.11189	-6.2357E-05	-0.60988	-0.0003399	-0.72177	-0.00040226	557.3222870053742	23.004	0.25239	23.004	22.87	23.122	0					33	24	2	0	0	0	0.33704	1	2270	2270		1.8442	0.36234	1	30338			17360	3909	11513	11628	23332	23332					0.07839621628886562
RKFAKLIMS	9	Unmodified	_RKFAKLIMS_					0	0	0		MTR|p.A392S|1|0.12|ENSG00000116984|chr1:236832064-236832064|G/T|missense_variant	MTR|p.A392S|1|0.12|ENSG00000116984|chr1:236832064-236832064|G/T|missense_variant	MTR|p.A392S|1|0.12|ENSG00000116984|chr1:236832064-236832064|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.332275390625	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.79	1	103.82	103.32	104.32	0.03791								0	0	0	0.2927	1	26520	26520		0.52476	0	1				17361	7435	11514	11629	23333	23333					0.10515245630199388
RKFFHLWRRI	10	Unmodified	_RKFFHLWRRI_					0	0	0		ENST00000370008.3_1_1:109351697-109351763:+|nuORF	ENST00000370008.3_1_1:109351697-109351763:+|nuORF	ENST00000370008.3_1_1:109351697-109351763:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.959228515625	3	486.957957	1457.85204	0.094116	4.583E-05	2.4219	0.0011794	2.516	0.0012252	487.29356274070636	95.615	0.54571	95.654	95.59	96.135	0.038872					33	26	2	0	0	0	0.47446	1	24180	24180		0.15932	0.01943	1	234490			17362	6199	11515	11630	23334	23334					0.14142945835715182
RKFLKWRDV	9	Unmodified	_RKFLKWRDV_					0	0	0			REV__tr|U7SVP5|U7SVP5_FUSNURiboflavinbiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01294PE=3SV=1	REV__tr|U7SVP5|U7SVP5_FUSNURiboflavinbiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01294PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.37255859375	2	624.372207	1246.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.58	1	103.62	103.12	104.12	0.03791								0	0	0	0.2927	1	26459	26459		0.52476	0.12405	1		+		17363	13212	11516	11631	23335	23335					0.11636484033510897
RKGISAKSQ	9	Unmodified	_RKGISAKSQ_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.790771484375	2	487.790715	973.566878	0.2262	0.00011034	0.094244	4.5971E-05	0.32045	0.00015631	487.7907044487439	78.774	2.9857	78.804	78.021	81.007	0.030159					180	105	4	0	0	0	0.33978	1	18740	18740		1.4819	0.68827	1	1403600			17364	2114	11517	11632	23336	23336					0.07903680911658739
RKIPVIMFF	9	Unmodified	_RKIPVIMFF_					0	0	0		ENST00000367941.6_1_6:132781824-132781866:-|nuORF	ENST00000367941.6_1_6:132781824-132781866:-|nuORF	ENST00000367941.6_1_6:132781824-132781866:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8429565429688	2	575.843905	1149.67326	0.35373	0.00020369	-1.3113	-0.00075513	-0.95761	-0.00055143	575.842903122291	88.66	0.56772	88.692	88.49	89.058	0.032257					52	24	3	0	0	0	0.34646	1	21913	21913		0.6015	0.6015	1	217190			17365	6181	11518	11633	23337	23337					0.10440720152610083
RKKARETL	8	Unmodified	_RKKARETL_					0	0	0			REV__ENSG00000006837|ENST00000265334|CDKL3	REV__ENSG00000006837|ENST00000265334|CDKL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.8150939941406	2	501.314358	1000.61416	0.078682	3.9445E-05	0.3789	0.00018995	0.45759	0.00022939	501.8151820549178	105.06	0.10596	105.06	105.02	105.13	0					12	8	2	0	0	0	0.54097	1	27058	27058		0.69038	0	1	125690	+		17366	7948	11519	11634	23338	23338					0.11387960182662482
RKKARETL	8	Unmodified	_RKKARETL_					0	0	0			REV__ENSG00000006837|ENST00000265334|CDKL3	REV__ENSG00000006837|ENST00000265334|CDKL3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	501.314358	1000.61416	0.078682	3.9445E-05	0.3789	0.00018995	0.45759	0.00022939	501.8151820549178	105.06	0.10596	105.06	105.02	105.13	0	0.057538	-0.0012415	NaN	0.69038	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125690	+		17367	7948	11519	11634							0.11387960182662482
RKKARETL	8	Unmodified	_RKKARETL_					0	0	0			REV__ENSG00000006837|ENST00000265334|CDKL3	REV__ENSG00000006837|ENST00000265334|CDKL3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	501.314358	1000.61416	0.33911	0.00017	2.742	0.0013746	3.0812	0.0015446	501.8153039974963	104.91	0.065498	104.94	104.93	104.99	0.034004	-0.057538	0.0011279	NaN	0.69038	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58004	+		17368	7948	11519	11634							0.11387960182662482
RKKEVELW	8	Unmodified	_RKKEVELW_					0	0	0			REV__nc|ENSG00000182329|Q0VF49-2|KIAA2012	REV__nc|ENSG00000182329|Q0VF49-2|KIAA2012	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.3143310546875	2	544.316566	1086.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.192	1	19.192	18.692	19.692	0								0	0	0	0.38822	1	1299	1299		0.69038	0	1		+		17369	10559	11520	11635	23339	23339					0.07873424605554646
RKKFGERDYTR	11	Unmodified	_RKKFGERDYTR_					0	0	0			REV__ENSG00000173598|ENST00000415493|NUDT4	REV__ENSG00000173598|ENST00000415493|NUDT4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2738952636719	3	485.932025	1454.77424	-0.17025	-8.2728E-05	-1.6377	-0.00079582	-1.808	-0.00087855	486.26497191283244	39.392	0.64389	39.392	39.162	39.806	0					29	23	2	0	0	0	0.31079	1	7104	7104		4.1166	1.4854	1	94553	+		17370	10327	11521	11636	23340	23340					0.06504843389029702
RKKKKIKT	8	Unmodified	_RKKKKIKT_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3670654296875	2	515.366393	1028.71823	0.0086242	4.4446E-06	0.33113	0.00017065	0.33975	0.0001751	515.366472315518	112.15	1.022	112.15	111.91	112.93	0					324	112	4	0	0	0	0.54081	4	28887	28769;28808;28848;28887		0.79363	0	1	9499400			17371	1731	11522	11637	23341;23342;23343;23344	23344					0.20502287010185682
RKKKKIKT	8	Unmodified	_RKKKKIKT_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.36669921875	2	515.366393	1028.71823	0.31658	0.00016315	0.029685	1.5299E-05	0.34627	0.00017845	515.3663213894835	112.16	0.90182	112.18	111.97	112.87	0.014595					297	103	4	0	0	0	0.54199	4	28626	28626;28701;28737;28773		0	0	1	6953900			17372	1731	11522	11637	23345;23346;23347;23348	23345					0.20502287010185682
RKKKKIKT	8	Unmodified	_RKKKKIKT_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3663330078125	2	515.366393	1028.71823	0.31797	0.00016387	0.068078	3.5085E-05	0.38604	0.00019895	515.3662609990074	112.89	0.26045	112.9	112.87	113.13	0.013817					46	33	2	0	0	0	0.54081	1	28807	28807		0.79363	0	1	309680			17373	1731	11522	11637	23349	23349					0.20502287010185682
RKKKKKKKTI	10	Unmodified	_RKKKKKKKTI_					0	0	0		ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.4623413085938	2	643.461356	1284.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.09	1	115.09	114.59	115.59	0								0	0	0	0.34018	1	29367	29367		0	0	1				17374	5992	11523	11638	23350	23350					0.2771015395253471
RKKKKKKKTI	10	Unmodified	_RKKKKKKKTI_					0	0	0		ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.4632568359375	2	643.461356	1284.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.91	1	116.91	116.41	117.41	0								0	0	0	0.34018	1	29712	29712		0	0	1				17375	5992	11523	11638	23351	23351					0.2771015395253471
RKKKKKKKTI	10	Unmodified	_RKKKKKKKTI_					0	0	0		ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.4629516601562	2	643.461356	1284.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.77	1	114.78	114.28	115.28	0.013336								0	0	0	0.34018	1	29193	29193		0	0	1				17376	5992	11523	11638	23352	23352					0.2771015395253471
RKKLKKKG	8	Unmodified	_RKKLKKKG_					0	0	0		ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4	ENST00000442210.2_1_12:123465790-123467130:+|nuORF	ENST00000442210.2_1_12:123465790-123467130:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.3536071777344	2	493.353286	984.692019	0.33558	0.00016556	0.3069	0.00015141	0.64248	0.00031697	493.3533295277234	112.19	1.0199	112.2	111.86	112.88	0.014595					318	118	4	0	0	0	0.54081	3	28755	28608;28755;28790		0.79363	0	1	10373000			17377	4864	11524	11639	23353;23354;23355	23354					0.19906017838707157
RKKRRKTIL	9	Unmodified	_RKKRRKTIL_					0	0	0		ENST00000444067.2_1_1:78312795-78313113:+|nuORF	ENST00000444067.2_1_1:78312795-78313113:+|nuORF	ENST00000444067.2_1_1:78312795-78313113:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	400.2801208496094	3	400.278808	1197.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.92	1	112.92	112.42	113.42	0								0	0	0	0.29394	1	28941	28941		0.26902	0	1				17378	6534	11525	11640	23356	23356					0.2235985457014067
RKKRRRRQQY	10	Unmodified	_RKKRRRRQQY_					0	0	0		ENST00000389622.6_1_3:97596453-97596525:+|nuORF	ENST00000389622.6_1_3:97596453-97596525:+|nuORF	ENST00000389622.6_1_3:97596453-97596525:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.3034973144531	3	492.302786	1473.88653	0.32384	0.00015943	0.26831	0.00013209	0.59215	0.00029152	492.30285094184467	102.21	0.65179	102.21	102.01	102.66	0					104	43	3	0	0	0	0.4753	1	26319	26319		0	0	1	309160			17379	6309	11526	11641	23357	23357					0.16854161976561954
RKKRRRSQRR	10	Unmodified	_RKKRRRSQRR_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.3065185546875	3	476.306531	1425.89776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.77	1	115.77	115.27	116.27	0								0	0	0	0.34006	1	29502	29502		0.13989	0.04505	1				17380	5096	11527	11642	23358	23358					0.20184984070669998
RKKRRRSQRR	10	Unmodified	_RKKRRRSQRR_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.3065185546875	3	476.306531	1425.89776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.43	1	115.44	114.94	115.94	0.013092								0	0	0	0.34006	1	29347	29347		0.13989	0.04505	1				17381	5096	11527	11642	23359	23359					0.20184984070669998
RKLFFSALF	9	Unmodified	_RKLFFSALF_					0	0	0		ENST00000562642.1_1_16:30967689-30967737:+|nuORF	ENST00000562642.1_1_16:30967689-30967737:+|nuORF	ENST00000562642.1_1_16:30967689-30967737:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.8219604492188	2	564.831852	1127.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.886	1	84.886	84.386	85.386	0								0	0	0	0.25992	1	20950	20950		7.2892	1.5288	1				17382	7164	11528	11643	23360	23360					0.0904320299059691
RKLHLRLLW	9	Unmodified	_RKLHLRLLW_					0	0	0			REV__nc|ENSG00000152527|Q8IVE3-2|PLEKHH2	REV__nc|ENSG00000152527|Q8IVE3-2|PLEKHH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.3167114257812	2	617.898392	1233.78223	-0.21046	-0.00013004	3.7846	0.0023385	3.5741	0.0022084	618.4012921588834	60.289	0.092495	60.362	60.306	60.398	0.073421					4	2	2	0	0	0	0.25809	1	13309	13309		2.3027	0.65011	1	36718	+		17383	9676	11529	11644	23361	23361					0.17469067167121466
RKLLQKKL	8	Unmodified	_RKLLQKKL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.8607788085938	2	513.860944	1025.70733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.88	1	112.88	112.38	113.38	0								0	0	0	0.38822	1	28931	28931		0.79363	0	1				17384	1101	11530	11645	23362	23362					0.19550884635896182
RKLPRWKLCL	10	Unmodified	_RKLPRWKLCL_					0	0	0		ENST00000450453.6_2_1:163292807-163295872:+|nuORF;ENST00000524800.5_1_1:163291810-163295872:+|nuORF	ENST00000450453.6_2_1:163292807-163295872:+|nuORF	ENST00000450453.6_2_1:163292807-163295872:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.27301025390625	3	438.272665	1311.79617	0.39627	0.00017367	0.46269	0.00020278	0.85896	0.00037646	438.27275619234797	102.75	0.70139	102.75	102.46	103.16	0					106	45	3	0	0	0	0.47446	1	26434	26434		0.15932	0	1	452880			17385	6561	11531	11646	23363	23363					0.15273976603907613
RKMSIPLLLPL	11	Unmodified	_RKMSIPLLLPL_					0	0	0		ENSG00000185823|ENST00000329468|NPAP1	ENSG00000185823|ENST00000329468|NPAP1	ENSG00000185823|ENST00000329468|NPAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.9098510742188	2	640.909776	1279.805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.62	1	39.708	39.208	40.208	0.088562								0	0	0	0.34212	1	7052	7052		0	0	1				17386	5047	11532	11647	23364	23364					0.1762890544973743
RKPGPFDGGI	10	Unmodified	_RKPGPFDGGI_					0	0	0		nc|ENSG00000221986|A2RUH7-2|MYBPHL;ENSG00000221986|ENST00000357155|MYBPHL	nc|ENSG00000221986|A2RUH7-2|MYBPHL	nc|ENSG00000221986|A2RUH7-2|MYBPHL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7554931640625	2	522.285266	1042.55598	0.43085	0.00022502	-1.8308	-0.00095619	-1.3999	-0.00073117	522.2841786293275	65.601	0.14042	65.668	65.543	65.684	0.066872					6	5	2	0	0	0	0.31794	1	14895	14895		3.5965	1.5367	1	66610			17387	5599	11533	11648	23365	23365					0.03640278537386621
RKPNHKLL	8	Unmodified	_RKPNHKLL_					0	0	0			REV__nc|ENSG00000124422|Q9UPT9-2|USP22	REV__nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.776611328125	2	503.319443	1004.62433	-0.015186	-7.6435E-06	0.57046	0.00028713	0.55528	0.00027948	503.82087974300305	90.375	0.31345	90.409	90.24	90.553	0.034065					21	12	3	0	0	0	0.3576	1	22460	22460		5.2307	0	1	92572	+		17388	8955	11534	11649	23366	23366					0.12220567907888835
RKPNHKLL	8	Unmodified	_RKPNHKLL_					0	0	0			REV__nc|ENSG00000124422|Q9UPT9-2|USP22	REV__nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	503.319443	1004.62433	0.20652	0.00010394	0.33564	0.00016893	0.54216	0.00027288	503.31943478279436	90.408	0.39651	90.408	90.231	90.628	0	-0.00053349	-0.00015517	NaN	5.2307	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44733	+		17389	8955	11534	11649							0.12220567907888835
RKPWLMET	8	Unmodified	_RKPWLMET_					0	0	0		ENST00000471374.1_1_22:32352234-32352363:+|nuORF	ENST00000471374.1_1_22:32352234-32352363:+|nuORF	ENST00000471374.1_1_22:32352234-32352363:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.765625	2	530.784044	1059.55354	0.279	0.00014809	-1.4722	-0.00078144	-1.1932	-0.00063335	530.7830694545804	71.694	0.43524	71.753	71.518	71.953	0.058578					19	15	2	0	0	0	0.52502	1	16822	16822		9.3474	4.1168	1	119270			17390	6670	11535	11650	23367	23367					0.026141068080505647
RKQCEEVSSV	10	Unmodified	_RKQCEEVSSV_					0	0	0			REV__ENSG00000164344|ENST00000264690|KLKB1	REV__ENSG00000164344|ENST00000264690|KLKB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7698364257812	2	582.787512	1163.56047	0.47076	0.00027435	-1.4093	-0.00082129	-0.93849	-0.00054694	582.7890540714656	57.128	0.14103	57.128	57.046	57.187	0					7	4	2	0	0	0	0.35104	1	12484	12484		17.113	0	1	43684	+		17391	9993	11536	11651	23368	23368					-0.014766251020319032
RKQKKAML	8	Unmodified	_RKQKKAML_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.81524658203125	2	501.815679	1001.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.87	1	104.87	104.37	105.37	0								0	0	0	0.38822	1	26998	26998		2.5775	0	1		+		17392	8012	11537	11652	23369	23369					0.11606092315957994
RKQTFIINFV	10	Unmodified	_RKQTFIINFV_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3607788085938	2	633.371872	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.072	1	90.072	89.572	90.572	0								0	0	0	0.33215	1	22524	22524		9.3831	0	1		+		17393	9053	11538	11653	23370	23370					0.10741644593804267
RKRLIQRR	8	Unmodified	_RKRLIQRR_					0	0	0		ENSG00000186788|ENST00000445385|SPATA31D3;ENSG00000189357|ENST00000419782|SPATA31D4	ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000186788|ENST00000445385|SPATA31D3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3900146484375	2	563.375615	1124.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.16	1	111.18	110.68	111.68	0.015678								0	0	0	0.38822	1	28351	28351		0.69038	0	1				17394	5091	11539	11654	23371	23371					0.1792984170474483
RKRRGLFI	8	Unmodified	_RKRRGLFI_					0	0	0		ENST00000327111.7_1_5:92919409-92919580:+|nuORF	ENST00000327111.7_1_5:92919409-92919580:+|nuORF	ENST00000327111.7_1_5:92919409-92919580:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.340576171875	2	523.34071	1044.66687	-0.064606	-3.3811E-05	-0.10186	-5.331E-05	-0.16647	-8.7121E-05	523.3400536370842	109.23	0.1549	109.23	109.15	109.3	0					51	23	3	0	0	0	0.53858	1	28116	28116		2.3027	0	1	1443600			17395	6046	11540	11655	23372	23372					0.14631963036140405
RKRRGLFI	8	Unmodified	_RKRRGLFI_					0	0	0		ENST00000327111.7_1_5:92919409-92919580:+|nuORF	ENST00000327111.7_1_5:92919409-92919580:+|nuORF	ENST00000327111.7_1_5:92919409-92919580:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	523.34071	1044.66687	0.18729	9.8016E-05	-0.4049	-0.0002119	-0.21761	-0.00011388	523.3400330155149	109.21	0.13658	109.23	109.15	109.29	0.019402	-2.2559E-05	-0.000141	NaN	2.3027	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1853600			17396	6046	11540	11655							0.14631963036140405
RKRRRPLP	8	Unmodified	_RKRRRPLP_					0	0	0		ENST00000298966.2_11:93232511-93276567:-|nuORF	ENST00000298966.2_11:93232511-93276567:-|nuORF	ENST00000298966.2_11:93232511-93276567:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8576049804688	2	539.857058	1077.69956	0.42163	0.00022762	0.77872	0.0004204	1.2004	0.00064802	539.8572729708053	112.05	0.67105	112.06	111.91	112.58	0.014595					163	80	3	0	0	0	0.54097	4	28531	28531;28566;28602;28661		0.69038	0.69038	1	2396200			17397	5968	11541	11656	23373;23374;23375;23376	23373					0.16382170158976805
RKRRRPLP	8	Unmodified	_RKRRRPLP_					0	0	0		ENST00000298966.2_11:93232511-93276567:-|nuORF	ENST00000298966.2_11:93232511-93276567:-|nuORF	ENST00000298966.2_11:93232511-93276567:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	539.857058	1077.69956	-0.0074501	-4.022E-06	1.1092	0.00059883	1.1018	0.00059481	539.8574340583518	112.05	0.88805	112.05	111.88	112.77	0	-0.0050949	0.00016672	NaN	0.69038	185	94	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3033300			17398	5968	11541	11656							0.16382170158976805
RKRRRWNKKSG	11	Unmodified	_RKRRRWNKKSG_					0	0	0			REV__nc|ENSG00000137309|P17096-3|HMGA1	REV__nc|ENSG00000137309|P17096-3|HMGA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.29925537109375	3	491.299153	1470.87563	-0.050111	-2.462E-05	0.51398	0.00025252	0.46386	0.0002279	491.2992791663712	107.5	0.32225	107.5	107.29	107.62	0					114	32	4	0	0	0	0.4185	1	27704	27704		0.094841	0.011491	1	922240	+		17399	12798	11542	11657	23377	23377					0.15902759602249716
RKRRRWNKKSG	11	Unmodified	_RKRRRWNKKSG_					0	0	0			REV__nc|ENSG00000137309|P17096-3|HMGA1	REV__nc|ENSG00000137309|P17096-3|HMGA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2986755371094	3	491.299153	1470.87563	0.25771	0.00012661	0.13692	6.7269E-05	0.39463	0.00019388	491.29908679519684	107.54	0.37108	107.56	107.26	107.63	0.022232					130	37	4	0	0	0	0.4185	2	27484	27484;27552		0.094841	0.011491	1	624300	+		17400	12798	11542	11657	23378;23379	23378					0.15902759602249716
RKSTGFDSIKL	11	Unmodified	_RKSTGFDSIKL_					0	0	0			REV__nc|ENSG00000197442|Q99683-2|MAP3K5	REV__nc|ENSG00000197442|Q99683-2|MAP3K5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.7728881835938	2	626.356419	1250.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.889	1	74.933	74.433	75.433	0.044548								0	0	0	0.33503	1	17743	17743		2.4985	0.84587	1		+		17401	9442	11543	11658	23380	23380					0.08296446488884612
RKTHILIL	8	Unmodified	_RKTHILIL_					0	0	0		ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.3317565917969	2	497.332019	992.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.76	1	119.76	119.26	120.26	0								0	0	0	0.38822	1	30142	30142		0	0	1				17402	4620	11544	11659	23381	23381					0.15286622710482334
RKTYESNI	8	Unmodified	_RKTYESNI_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1	REV__nc|ENSG00000075651|Q13393-3|PLD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7668151855469	2	505.766906	1009.51926	0.20925	0.00010583	-0.4462	-0.00022567	-0.23695	-0.00011984	505.76659314697133	37.695	0.83148	37.695	37.442	38.274	0					69	28	4	0	0	0	0.4772	1	6723	6723		15.847	1.0089	1	361770	+		17403	8199	11545	11660	23382	23382					0.014879819208090339
RKVFEEFLI	9	Unmodified	_RKVFEEFLI_					0	0	0			REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B	REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2145385742188	2	590.839874	1179.66519	0.89955	0.00053149	0.074368	4.394E-05	0.97391	0.00057543	590.8399084715128	80.368	0.64543	80.368	80.197	80.843	0					44	22	3	0	0	0	0.24929	1	19577	19577		9.3831	0	1	359720	+		17404	8160	11546	11661	23383	23383					0.08254864436867138
RKWDDRWGD	9	Unmodified	_RKWDDRWGD_					0	0	0			REV__ENST00000418833.2_1_1:1335129-1335381:+|nuORF	REV__ENST00000418833.2_1_1:1335129-1335381:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.2911987304688	2	617.291611	1232.56867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.565	1	23.565	23.065	24.065	0								0	0	0	0.2927	1	2442	2442		0.52476	0	1		+		17405	11809	11547	11662	23384	23384					-0.0383131007040447
RKWFIYCF	8	Unmodified	_RKWFIYCF_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2965698242188	2	581.796955	1161.57936	0.60875	0.00035417	-3.2843	-0.0019108	-2.6755	-0.0015566	582.2971212810014	97.005	0.71648	97.005	96.722	97.438	0					63	34	2	0	0	0	0.53423	1	24731	24731		5.2307	0.90143	1	220850	+		17406	11078	11548	11663	23385	23385					0.00503001050333296
RKWFIYCF	8	Unmodified	_RKWFIYCF_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7938232421875	2	581.796955	1161.57936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.221	1	97.262	96.762	97.762	0.040855								0	0	0	0.38822	1	24547	24547		5.2307	0.90143	1		+		17407	11078	11548	11663	23386	23386					0.00503001050333296
RKWFIYCF	8	Unmodified	_RKWFIYCF_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7948608398438	2	581.796955	1161.57936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.44	1	97.481	96.981	97.981	0.040855								0	0	0	0.38822	1	24614	24614		5.2307	0.90143	1		+		17408	11078	11548	11663	23387	23387					0.00503001050333296
RKWQPVAPM	9	Unmodified	_RKWQPVAPM_					0	0	0		ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.8037109375	2	556.805311	1111.59607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.594	1	99.594	99.094	100.09	0								0	0	0	0.28527	1	25421	25421		2.0598	0	1				17409	4776	11549	11664	23388	23388					0.04473501936286084
RKYRTIIF	8	Unmodified	_RKYRTIIF_					0	0	0			REV__nc|ENSG00000105983|Q8WVP7-2|LMBR1	REV__nc|ENSG00000105983|Q8WVP7-2|LMBR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7700805664062	2	548.834926	1095.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.325	1	96.364	95.864	96.864	0.039772								0	0	0	0.38822	1	24271	24271		0.79363	0	1		+		17410	8562	11550	11665	23389	23389					0.11129721222141598
RLAAGQVFGE	10	Unmodified	_RLAAGQVFGE_					0	0	0			REV__ENSG00000142409|ENST00000610935|ZNF787	REV__ENSG00000142409|ENST00000610935|ZNF787	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2322387695312	2	524.282723	1046.55089	0.24824	0.00013015	-0.17878	-9.373E-05	0.069459	3.6416E-05	524.2826059436891	38.675	0.44376	38.675	38.426	38.87	0					23	16	2	0	0	0	0.31838	1	6829	6829		1.4819	0.68827	1	37468	+		17411	9431	11551	11666	23390	23390					0.02947974674748366
RLAAGQVFGE	10	Unmodified	_RLAAGQVFGE_					0	0	0			REV__ENSG00000142409|ENST00000610935|ZNF787	REV__ENSG00000142409|ENST00000610935|ZNF787	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	524.282723	1046.55089	0.25351	0.00013291	-0.12894	-6.7601E-05	0.12457	6.5312E-05	524.2825744600574	38.521	0.41035	38.608	38.385	38.795	0.08688	-0.03354	3.3585E-05	NaN	1.4819	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26175	+		17412	9431	11551	11666							0.02947974674748366
RLAESFLPI	9	Unmodified	_RLAESFLPI_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038330078125	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.756	1	95.795	95.295	96.295	0.038872								0	0	0	0.2722	1	24099	24099		4.756	0.42677	1		+		17413	9769	11552	11667	23391	23391					0.0762661985700106
RLAVEEEEE	9	Unmodified	_RLAVEEEEE_					0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7666625976562	2	552.264393	1102.51423	0.2157	0.00011913	0.92921	0.00051317	1.1449	0.00063229	552.2648500744541	22.146	0.27287	22.248	22.091	22.363	0.10178					34	20	2	0	0	0	0.33849	1	1912	1912		1.6526	0	1	28047	+		17414	8691	11553	11668	23392	23392					-0.03292366732443952
RLCEESGLRL	10	Unmodified	_RLCEESGLRL_					0	0	0			REV__SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|37|3|sense	REV__SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|37|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3137817382812	2	588.313697	1174.61284	0.386	0.00022709	2.2663	0.0013333	2.6523	0.0015604	588.3136031981052	72.45	0.80424	72.506	72.207	73.012	0.055939					89	27	5	0	0	0	0.22118	1	16993	16993		31.268	2.1868	1	913150	+		17415	13017	11554	11669	23393	23393					0.03251958031592039
RLDANLQGPF	10	Unmodified	_RLDANLQGPF_					0	0	0			REV__ENSG00000196230|ENST00000327892|TUBB	REV__ENSG00000196230|ENST00000327892|TUBB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7996215820312	2	565.80128	1129.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.381	1	17.381	16.881	17.881	0								0	0	0	0.33892	1	912	912		1.4819	0	1		+		17416	8514	11555	11670	23394	23394					0.028396462205364514
RLDWPPHARL	10	Unmodified	_RLDWPPHARL_					0	0	0		ENST00000531072.1_1_11:64808545-64809015:+|nuORF	ENST00000531072.1_1_11:64808545-64809015:+|nuORF	ENST00000531072.1_1_11:64808545-64809015:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.9033203125	3	420.903518	1259.68872	-0.18839	-7.9292E-05	0.65294	0.00027483	0.46455	0.00019553	420.9033958729073	43.491	2.0502	43.58	42.887	44.937	0.088924					234	74	5	0	0	0	0.41463	1	8195	8195		10.315	0.55098	1	765680			17417	7026	11556	11671	23395	23395					0.06926722994035117
RLFGTTVTF	9	Unmodified	_RLFGTTVTF_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2899780273438	2	521.290017	1040.56548	0.36991	0.00019283	-0.30116	-0.00015699	0.068748	3.5838E-05	521.2900005089881	62.212	0.90516	62.212	61.956	62.861	0					67	33	3	0	0	0	0.0045417	1	14031	14031		89.401	30.722	1	517650			17418	771	11557	11672	23396	23396					0.0468204682290434
RLFGTTVTF	9	Unmodified	_RLFGTTVTF_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2901611328125	2	521.290017	1040.56548	0.27853	0.00014519	-0.45667	-0.00023806	-0.17814	-9.2862E-05	521.2899506791206	62.105	0.67688	62.178	62.011	62.688	0.073421					48	23	3	0	0	0	0.012041	1	13855	13855		63.961	20.102	1	560570			17419	771	11557	11672	23397	23397					0.0468204682290434
RLFHCNDERL	10	Unmodified	_RLFHCNDERL_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.88238525390625	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.986	1	61.059	60.559	61.559	0.073421								0	0	0	0.33869	1	13521	13521		1.7423	0.63252	1		+		17420	8320	11558	11673	23398	23398					-0.008861213626232711
RLFRWLYEKFR	11	Unmodified	_RLFRWLYEKFR_					0	0	0		ENSG00000167904|ENST00000434581|TMEM68	ENSG00000167904|ENST00000434581|TMEM68	ENSG00000167904|ENST00000434581|TMEM68	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.57373046875	4	404.232039	1612.89905	-0.49387	-0.00019964	-2.6048	-0.0010529	-3.0987	-0.0012526	404.4818427474921	41.053	0.44003	41.143	41.011	41.451	0.089642					24	15	2	0	0	0	0.31101	1	7548	7548		0.094841	0.094841	1	40709			17421	4240	11559	11674	23399	23399					0.11711760596176646
RLFVGMILI	9	Unmodified	_RLFVGMILI_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C;ATP6V0C|p.I136M|1|0.14|ENSG00000185883|chr16:2519685-2519685|C/G|missense_variant	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3193359375	2	531.33063	1060.64671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.72	1	100.76	100.26	101.26	0.042839								0	0	0	0.25692	1	25611	25611		7.9102	0.62092	1				17422	5050	11560	11675	23400	23400					0.11881031261304997
RLFYNYVTQ	9	Unmodified	_RLFYNYVTQ_					0	0	0			REV__nc|ENSG00000133612|Q96P47|AGAP3	REV__nc|ENSG00000133612|Q96P47|AGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.81640625	2	602.31148	1202.60841	0.42928	0.00025856	3.6457	0.0021959	4.075	0.0024544	602.815577975015	95.255	0.62544	95.255	94.779	95.405	0					44	26	2	0	0	0	0.23216	1	24127	24127		14.838	0.93222	1	61420	+		17423	9151	11561	11676	23401	23401					0.015208168803155786
RLGQSHKSSR	10	Unmodified	_RLGQSHKSSR_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.32080078125	2	578.320703	1154.62685	0.26939	0.00015579	0.2327	0.00013458	0.50209	0.00029037	578.3207283359675	86.982	1.1176	86.982	86.831	87.948	0					95	44	3	0	0	0	0.45945	1	21659	21659		2.9952	0.93549	1	355750	+		17424	9678	11562	11677	23402	23402					0.05572371574908175
RLHERIER	8	Unmodified	_RLHERIER_					0	0	0			REV__ENSG00000158301|ENST00000483720|GPRASP2	REV__ENSG00000158301|ENST00000483720|GPRASP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.8187866210938	2	554.820338	1107.62612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.18	1	108.18	107.68	108.68	0								0	0	0	0.38822	1	27902	27902		5.2307	0	1		+		17425	9800	11563	11678	23403	23403					0.0766157692582965
RLHIIVTLTVS	11	Unmodified	_RLHIIVTLTVS_					0	0	0			REV__ENST00000599504.5_1_19:40502974-40503061:+|nuORF	REV__ENST00000599504.5_1_19:40502974-40503061:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3932495117188	2	626.392805	1250.77106	-0.24112	-0.00015103	1.6132	0.0010105	1.3721	0.00085947	626.3937211905079	108.78	0.28772	108.78	108.7	108.99	0					104	44	3	0	0	0	0.39378	1	28076	28076		5.7319	4.0792	1	2738400	+		17426	12618	11564	11679	23404	23404					0.15570200282309088
RLHPYAIF	8	Unmodified	_RLHPYAIF_					0	0	0			REV__ENST00000550009.1_1_12:120875908-120876378:+|nuORF	REV__ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.77655029296875	2	508.787444	1015.56034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.41	1	89.41	88.91	89.91	0								0	0	0	0.38723	1	22323	22323		15.768	6.4208	1		+		17427	8695	11565	11680	23405	23405					0.05317787750948355
RLHRPPVI	8	Unmodified	_RLHRPPVI_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.3145446777344	2	494.314161	986.613768	0.71994	0.00035588	0.0082055	4.0561E-06	0.72814	0.00035993	494.3140152419968	92.799	0.81075	92.799	92.458	93.268	0					62	30	3	0	0	0	0.52502	1	23361	23361		9.3474	9.3474	1	229020			17428	4126	11566	11681	23406	23406					0.11992585253449306
RLHRPPVI	8	Unmodified	_RLHRPPVI_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.314453125	2	494.314161	986.613768	0.66289	0.00032768	0.070026	3.4615E-05	0.73292	0.00036229	494.31407336657736	92.724	0.79445	92.761	92.475	93.27	0.03653					53	31	3	0	0	0	0.52502	1	23183	23183		9.3474	9.3474	1	608300			17429	4126	11566	11681	23407	23407					0.11992585253449306
RLHRPPVI	8	Unmodified	_RLHRPPVI_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	494.314161	986.613768	0.71994	0.00035588	0.0082055	4.0561E-06	0.72814	0.00035993	494.3140152419968	92.799	0.81075	92.799	92.458	93.268	0	0.019378	-3.6099E-05	NaN	9.3474	62	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229020			17430	4126	11566	11681							0.11992585253449306
RLHRPPVI	8	Unmodified	_RLHRPPVI_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	494.314161	986.613768	0.66289	0.00032768	0.070026	3.4615E-05	0.73292	0.00036229	494.31407336657736	92.724	0.79445	92.761	92.475	93.27	0.03653	-0.019378	2.5018E-05	NaN	9.3474	53	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608300			17431	4126	11566	11681							0.11992585253449306
RLHVERDY	8	Unmodified	_RLHVERDY_					0	0	0			REV__ENST00000483602.1_1_2:241534571-241535939:+|nuORF	REV__ENST00000483602.1_1_2:241534571-241535939:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.285400390625	2	544.285797	1086.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.59	1	119.59	119.09	120.09	0								0	0	0	0.38822	1	30116	30116		0.69038	0	1		+		17432	9428	11567	11682	23408	23408					0.01722492906287698
RLIKKRLGPPL	11	Unmodified	_RLIKKRLGPPL_					0	0	0			REV__ENST00000370114.7_1_1:101361304-101361547:-|nuORF	REV__ENST00000370114.7_1_1:101361304-101361547:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.9405517578125	2	645.940257	1289.86596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.54	1	115.55	115.05	116.05	0.013092								0	0	0	0.34212	1	29370	29370		0	0	1		+		17433	11589	11568	11683	23409	23409					0.2326217854420065
RLKDREFEV	9	Unmodified	_RLKDREFEV_					0	0	0		ENST00000513487.5_1_5:87524264-87564634:-|nuORF	ENST00000513487.5_1_5:87524264-87564634:-|nuORF	ENST00000513487.5_1_5:87524264-87564634:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7709350585938	2	596.327662	1190.64077	0.091751	5.4714E-05	3.4663	0.0020671	3.5581	0.0021218	596.3296107656308	71.523	0.32529	71.582	71.437	71.763	0.058578					20	11	2	0	0	0	0.25051	1	16752	16752		7.9102	0	1	190850			17434	6924	11569	11684	23410	23410					0.053076042833026804
RLKHEHIERRR	11	Unmodified	_RLKHEHIERRR_					0	0	0		ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35	ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.6349792480469	3	510.634313	1528.88111	0.48679	0.00024857	-0.0023878	-1.2193E-06	0.4844	0.00024735	510.9686174351734	99.431	1.1261	99.431	98.533	99.659	0					204	70	4	0	0	0	0.41892	1	25187	25187		0	0	1	427590			17435	49	11570	11685	23411	23411					0.13782438394036944
RLKHEHIERRR	11	Unmodified	_RLKHEHIERRR_					0	0	0		ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35	ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.63397216796875	3	510.634313	1528.88111	0.51124	0.00026106	-0.10244	-5.231E-05	0.4088	0.00020875	510.63410627947223	99.341	1.0196	99.383	98.705	99.725	0.042839					198	66	4	0	0	0	0.41892	2	25002	25002;25086		0	0	1	283240			17436	49	11570	11685	23412;23413	23412					0.13782438394036944
RLKIKWTL	8	Unmodified	_RLKIKWTL_					0	0	0			REV__ENSG00000256436|ENST00000390675|TAS2R31	REV__ENSG00000256436|ENST00000390675|TAS2R31	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8662719726562	2	529.347669	1056.68079	-0.046133	-2.442E-05	1.0727	0.00056785	1.0266	0.00054343	529.348392544223	112.03	0.12284	112.03	112	112.12	0					18	13	2	0	0	0	0.3576	1	28677	28677		2.3027	0	1	534540	+		17437	11098	11571	11686	23414	23414					0.15471195744567012
RLKLKRITLI	10	Unmodified	_RLKLKRITLI_					0	0	0			REV__ENST00000479096.1_1_20:30135258-30136578:+|nuORF	REV__ENST00000479096.1_1_20:30135258-30136578:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.445068359375	2	627.442632	1252.87071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.006	1	59.076	58.576	59.576	0.070477								0	0	0	0.34018	1	12919	12919		0	0	1		+		17438	12071	11572	11687	23415	23415					0.2543906268695082
RLKQKIKVLKK	11	Unmodified	_RLKQKIKVLKK_					0	0	0		SEC23B-ZCCHC7|1|fusion;ENST00000481507.5_1_9:37326993-37357262:+|nuORF;GLIPR2-ZCCHC7|1|fusion;SEC23B-ZCCHC7|2|fusion;ENSG00000147905|ENST00000336755|ZCCHC7	SEC23B-ZCCHC7|1|fusion	SEC23B-ZCCHC7|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	461.329833984375	3	461.329168	1380.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.52	1	111.53	111.03	112.03	0.015678								0	0	0	0.34185	1	28435	28435		0.094841	0	1				17439	13359	11573	11688	23416	23416					0.2904299615809123
RLKTLTKIK	9	Unmodified	_RLKTLTKIK_					0	0	0		ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.87939453125	2	550.879333	1099.74411	0.038101	2.0989E-05	-0.12573	-6.926E-05	-0.087626	-4.8271E-05	550.8792099120982	112.95	0.24926	112.95	112.89	113.14	0					38	33	2	0	0	0	0.26021	1	28983	28983		0	0	1	154470			17440	5337	11574	11689	23417	23417					0.1982313646176408
RLKTLTKIK	9	Unmodified	_RLKTLTKIK_					0	0	0		ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.880126953125	2	550.879333	1099.74411	0.41077	0.00022628	-0.084478	-4.6537E-05	0.32629	0.00017975	550.8791180810038	111.95	0.63422	111.97	111.81	112.45	0.014595					187	76	3	0	0	0	0.35102	2	28512	28512;28619		0	0	1	4140300			17441	5337	11574	11689	23418;23419	23418					0.1982313646176408
RLKTLTKIK	9	Unmodified	_RLKTLTKIK_					0	0	0		ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8795166015625	2	550.879333	1099.74411	0.40763	0.00022455	-0.16766	-9.2362E-05	0.23996	0.00013219	550.8793095228613	112.76	0.19992	112.77	112.67	112.87	0.013817					31	21	2	0	0	0	0.35102	1	28791	28791		0	0	1	295330			17442	5337	11574	11689	23420	23420					0.1982313646176408
RLKVPDVPE	9	Unmodified	_RLKVPDVPE_					0	0	0			REV__ENST00000423554.5_1_5:154202945-154230090:-|nuORF	REV__ENST00000423554.5_1_5:154202945-154230090:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.8077392578125	2	526.808574	1051.60259	-0.1497	-7.8863E-05	0.13052	6.8759E-05	-0.019181	-1.0105E-05	526.8085505162055	30.986	0.86513	31.06	30.868	31.733	0.073782					98	42	4	0	0	0	0.34704	1	4610	4610		0.52476	0.52476	1	251840	+		17443	10206	11575	11690	23421	23421					0.07885718368675043
RLLKHKKK	8	Unmodified	_RLLKHKKK_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3629150390625	2	525.86656	1049.71857	0.16513	8.6835E-05	-3.7366	-0.0019649	-3.5714	-0.0018781	526.3663367272792	115.8	0.047829	115.81	115.78	115.83	0.013092					6	5	2	0	0	0	0.3576	1	29425	29425		0.69038	0	1	6733	+		17444	8810	11576	11691	23422	23422					0.19569706730021608
RLLLTKIP	8	Unmodified	_RLLLTKIP_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7208251953125	2	477.328945	952.643337	0.17636	8.4184E-05	-0.45516	-0.00021726	-0.2788	-0.00013308	477.3287366834628	83.123	0.26102	83.123	82.99	83.251	0					12	8	2	0	0	0	0.3576	1	20441	20441		0.6015	0	1	83368			17445	1643	11577	11692	23423	23423					0.16512104478920264
RLLNLFPTF	9	Unmodified	_RLLNLFPTF_					0	0	0		SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|70|2|anti-sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|70|2|anti-sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|70|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8054809570312	2	560.829309	1119.64407	0.52307	0.00029335	0.42056	0.00023587	0.94364	0.00052922	560.8288465029668	82.566	0.91728	82.566	82.454	83.371	0					41	31	2	0	0	0	0.2446	1	20470	20470		11.64	0	1	79504			17446	13416	11578	11693	23424	23424					0.08902899127997443
RLLRENSLYT	10	Unmodified	_RLLRENSLYT_					0	0	0		ENST00000475185.5_1_18:20877812-20889646:-|nuORF	ENST00000475185.5_1_18:20877812-20889646:-|nuORF	ENST00000475185.5_1_18:20877812-20889646:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.4290161132812	2	632.854044	1263.69353	0.26053	0.00016488	1.1716	0.00074147	1.4322	0.00090635	633.3567328946876	108.32	0.033058	108.34	108.32	108.35	0.022224					5	4	2	0	0	0	0.31803	1	27725	27725		1.3295	0	1	849410			17447	6708	11579	11694	23425	23425					0.07223562346143808
RLLRPHAF	8	Unmodified	_RLLRPHAF_					0	0	0		nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.7666931152344	2	505.306336	1008.59812	-0.36516	-0.00018452	-1.5654	-0.00079101	-1.9306	-0.00097553	505.3055143241435	41.172	0.36238	41.262	41.088	41.451	0.089645					17	12	2	0	0	0	0.3576	1	7472	7472		0.69038	0	1	31180			17448	2518	11580	11695	23426	23426					0.09416298736414319
RLLYIFFSWLK	11	Unmodified	_RLLYIFFSWLK_					0	0	0			REV__ENSG00000175826|ENST00000574322|CTDNEP1	REV__ENSG00000175826|ENST00000574322|CTDNEP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.95904541015625	3	495.958741	1484.85439	0.70329	0.0003488	-0.03739	-1.8544E-05	0.6659	0.00033026	495.9586116921887	98.06	2.0454	98.06	97.387	99.433	0					237	116	4	0	0	0	0.41713	1	25031	25031		0.40827	0.31342	1	494510	+		17449	10388	11581	11696	23427	23427					0.13135936730168396
RLNKLKLI	8	Unmodified	_RLNKLKLI_					0	0	0			REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.34808349609375	2	499.347669	996.680785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.3	1	106.3	105.8	106.8	0								0	0	0	0.38822	1	27408	27408		0.79363	0	1		+		17450	9355	11582	11697	23428	23428					0.18231195744544948
RLPEEWSQW	9	Unmodified	_RLPEEWSQW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7987670898438	2	615.798737	1229.58292	-0.16603	-0.00010224	0.30968	0.0001907	0.14365	8.8458E-05	615.7987976576688	61.742	1.0876	61.742	61.543	62.631	0					140	49	3	0	0	0	0.0044228	3	13908	13860;13908;13949		93.938	63.302	1	3732100			17451	1508	11583	11698	23429;23430;23431	23430					-0.022686576421165228
RLPEEWSQW	9	Unmodified	_RLPEEWSQW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.798828125	2	615.798737	1229.58292	-0.12418	-7.6467E-05	0.32799	0.00020197	0.20381	0.00012551	615.7988615570621	61.644	1.4211	61.718	61.486	62.907	0.073418					187	65	4	0	0	0	0.0042616	2	13736	13736;13810		100.09	69.454	1	3868600			17452	1508	11583	11698	23432;23433	23432					-0.022686576421165228
RLPEPLPSW	9	Unmodified	_RLPEPLPSW_					0	0	0		ENST00000548968.1_1_12:59307761-59313848:-|nuORF;ENSG00000139263|ENST00000320743|LRIG3	ENST00000548968.1_1_12:59307761-59313848:-|nuORF	ENST00000548968.1_1_12:59307761-59313848:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.289794921875	2	547.803291	1093.59203	0.5582	0.00030579	0.04968	2.7215E-05	0.60788	0.000333	547.8033892730483	63.985	0.72283	63.985	63.762	64.485	0					43	25	2	0	0	0	0.11198	2	14586	14586;14637		29.841	8.3036	1	281600			17453	2960	11584	11699	23434;23435	23434					0.04897735714234841
RLPEPLPSW	9	Unmodified	_RLPEPLPSW_					0	0	0		ENST00000548968.1_1_12:59307761-59313848:-|nuORF;ENSG00000139263|ENST00000320743|LRIG3	ENST00000548968.1_1_12:59307761-59313848:-|nuORF	ENST00000548968.1_1_12:59307761-59313848:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2899780273438	2	547.803291	1093.59203	0.48929	0.00026804	-0.35709	-0.00019561	0.1322	7.2422E-05	547.8030594952951	63.915	0.4703	63.986	63.76	64.23	0.071018					26	15	2	0	0	0	0.10543	1	14413	14413		31.268	8.5321	1	292060			17454	2960	11584	11699	23436	23436					0.04897735714234841
RLPHGKTF	8	Unmodified	_RLPHGKTF_					0	0	0			REV__ENST00000604062.6_2_X:53153022-53153115:+|nuORF	REV__ENST00000604062.6_2_X:53153022-53153115:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2773742675781	2	478.277244	954.539935	0.28741	0.00013746	-2.2091	-0.0010565	-1.9217	-0.00091909	478.2769381212384	81.094	0.77318	81.118	80.771	81.544	0.023613					86	27	5	0	0	0	0.53345	1	19730	19730		5.7604	0	1	497600	+		17455	12632	11585	11700	23437	23437					0.060846170911418085
RLPKQIVL	8	Unmodified	_RLPKQIVL_					0	0	0			REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF	REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.3235778808594	2	483.826569	965.638586	0.13943	6.746E-05	-3.4572	-0.0016727	-3.3178	-0.0016052	483.8246617915376	94.328	0.099556	94.328	94.271	94.371	0					6	4	2	0	0	0	0.3576	1	23824	23824		2.8892	0	1	34749	+		17456	9302	11586	11701	23438	23438					0.1543922033616809
RLPLRLFLI	9	Unmodified	_RLPLRLFLI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8846435546875	2	570.884419	1139.75428	-0.031775	-1.814E-05	0.53355	0.0003046	0.50177	0.00028646	570.8846392569598	72.704	0.81599	72.704	72.468	73.284	0					74	28	4	0	0	0	0.011655	4	17250	17206;17250;17303;17358		64.236	30.134	1	1058300			17457	1119	11587	11702	23439;23440;23441;23442	23440					0.1899974418702186
RLPLRLFLI	9	Unmodified	_RLPLRLFLI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8849487304688	2	570.884419	1139.75428	0.11536	6.5856E-05	0.42789	0.00024427	0.54324	0.00031013	570.8844822610308	72.636	0.86755	72.692	72.43	73.298	0.055939					83	29	4	0	0	0	0.05573	3	17033	17033;17087;17136		42.095	13.608	1	905400			17458	1119	11587	11702	23443;23444;23445	23443					0.1899974418702186
RLPSETYFF	9	Unmodified	_RLPSETYFF_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2929077148438	2	580.292756	1158.57096	0.6148	0.00035676	-0.39952	-0.00023184	0.21528	0.00012493	580.2924342417394	63.977	1.2404	63.977	63.733	64.973	0					117	44	5	0	0	0	0.03472	6	14546	14546;14593;14638;14650;14704;14773		47.749	18.667	1	1509400			17459	5701	11588	11703	23446;23447;23448;23449;23450;23451	23446					-0.001982743853204738
RLPSETYFF	9	Unmodified	_RLPSETYFF_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.29296875	2	580.292756	1158.57096	0.60589	0.00035159	-0.23509	-0.00013642	0.3708	0.00021517	580.2925000677201	63.859	1.0886	63.93	63.706	64.794	0.071018					92	38	5	0	0	0	0.02293	4	14420	14377;14420;14466;14510		56.177	22.349	1	1591900			17460	5701	11588	11703	23452;23453;23454;23455	23453					-0.001982743853204738
RLPSSWALF	9	Unmodified	_RLPSSWALF_					0	0	0		ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2994995117188	2	538.798009	1075.58147	0.13909	7.494E-05	-0.64468	-0.00034735	-0.50559	-0.00027241	538.7975818569856	71.953	1.2132	71.953	71.669	72.883	0					88	42	3	0	0	0	0.065576	4	16981	16971;16981;17036;17106		39.95	13.066	1	571560			17461	2435	11589	11704	23456;23457;23458;23459	23457					0.04669753059783943
RLPSSWALF	9	Unmodified	_RLPSSWALF_					0	0	0		ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.797607421875	2	538.798009	1075.58147	0.33091	0.00017829	-0.7479	-0.00040297	-0.41699	-0.00022467	538.7974734207586	71.777	0.88875	71.833	71.649	72.538	0.055931					78	31	4	0	0	0	0.11547	2	16788	16788;16837		29.082	5.9332	1	655760			17462	2435	11589	11704	23460;23461	23460					0.04669753059783943
RLQIVVRKH	9	Unmodified	_RLQIVVRKH_					0	0	0			REV__nc|ENSG00000170537|Q7Z402-2|TMC7	REV__nc|ENSG00000170537|Q7Z402-2|TMC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8713989257812	2	574.872374	1147.73019	0.27317	0.00015704	-2.7342	-0.0015718	-2.4611	-0.0014148	574.8710396215363	109.65	0.07431	109.66	109.6	109.67	0.017242					16	8	3	0	0	0	0.3354	1	28046	28046		2.0598	0.40713	1	1004800	+		17463	10218	11590	11705	23462	23462					0.16223903753348168
RLQIVVRKH	9	Unmodified	_RLQIVVRKH_					0	0	0			REV__nc|ENSG00000170537|Q7Z402-2|TMC7	REV__nc|ENSG00000170537|Q7Z402-2|TMC7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	574.872374	1147.73019	-0.062654	-3.6018E-05	-2.7899	-0.0016038	-2.8526	-0.0016399	574.870855577182	109.65	0.099968	109.65	109.57	109.67	0	-0.006179	-1.339E-05	NaN	2.0598	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1524900	+		17464	10218	11590	11705							0.16223903753348168
RLQIVVRKH	9	Unmodified	_RLQIVVRKH_					0	0	0			REV__nc|ENSG00000170537|Q7Z402-2|TMC7	REV__nc|ENSG00000170537|Q7Z402-2|TMC7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.872374	1147.73019	0.27317	0.00015704	-2.7342	-0.0015718	-2.4611	-0.0014148	574.8710396215363	109.65	0.07431	109.66	109.6	109.67	0.017242	0.006179	5.0602E-05	NaN	2.0598	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1004800	+		17465	10218	11590	11705							0.16223903753348168
RLRAPLPV	8	Unmodified	_RLRAPLPV_					0	0	0			REV__nc|ENSG00000132394|P57772-2|EEFSEC	REV__nc|ENSG00000132394|P57772-2|EEFSEC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	461.3302917480469	2	461.303262	920.59197	0.12615	5.8195E-05	-0.46071	-0.00021253	-0.33455	-0.00015433	461.30276056191593	111.02	0.30293	111.03	110.9	111.2	0.015678					69	44	2	0	0	0	0.3576	1	28298	28298		5.7604	0	1	656410	+		17466	9114	11591	11706	23463	23463					0.12849780504870978
RLRCEECL	8	Unmodified	_RLRCEECL_					0	0	0		SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|7|1|sense	SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|7|1|sense	SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|7|1|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7917785644531	2	511.249511	1020.48447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.19	1	104.19	103.69	104.69	0								0	0	0	0.38822	1	26804	26804		9.3474	1.4373	1				17467	13409	11592	11707	23464	23464					-0.024953004831559156
RLRHGSSSYPP	11	Unmodified	_RLRHGSSSYPP_					0	0	0		nc|ENSG00000169946|Q8WW38-2|ZFPM2;ENSG00000169946|ENST00000407775|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.8284301757812	2	628.82836	1255.64217	0.42446	0.00026691	0.31697	0.00019932	0.74143	0.00046623	628.8286319524108	74.547	0.47218	74.596	74.424	74.896	0.048538					26	16	2	0	0	0	0.39378	1	17647	17647		5.7319	2.1354	1	158210			17468	4367	11593	11708	23465	23465					0.024572383720851576
RLRLLRNLL	9	Unmodified	_RLRLLRNLL_					0	0	0		ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000563591.5_1_16:28858025-28877416:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8967895507812	2	583.895849	1165.77715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.14	1	115.14	114.64	115.64	0								0	0	0	0.2927	1	29380	29380		0.52476	0	1				17469	7167	11594	11709	23466	23466					0.20088763304511303
RLRRQERERKF	11	Unmodified	_RLRRQERERKF_					0	0	0		TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant;ENSG00000159450|ENST00000614923|TCHH	TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.310302734375	3	525.309718	1572.90732	0.54494	0.00028626	-0.27021	-0.00014195	0.27473	0.00014432	525.6439773582895	98.079	0.54916	98.079	97.839	98.389	0					51	28	2	0	0	0	0.41892	1	25052	25052		0	0	1	135200			17470	3731	11595	11710	23467	23467					0.1437870756551547
RLRRVVGQLD	10	Unmodified	_RLRRVVGQLD_					0	0	0		nc|ENSG00000011478|Q9NXS2-3|QPCTL;ENSG00000011478|ENST00000012049|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8206787109375	2	606.370195	1210.72584	1.0519	0.00063783	-1.8162	-0.0011013	-0.76434	-0.00046347	606.3689918305757	85.345	0.53694	85.368	85.211	85.748	0.023125					34	21	2	0	0	0	0.31616	1	20901	20901		10.074	10.074	1	191180			17471	435	11596	11711	23468	23468					0.12890394539795125
RLRRVVGQLD	10	Unmodified	_RLRRVVGQLD_					0	0	0		nc|ENSG00000011478|Q9NXS2-3|QPCTL;ENSG00000011478|ENST00000012049|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	606.370195	1210.72584	0.87123	0.00052829	-1.8553	-0.001125	-0.98403	-0.00059668	606.3691114377615	85.375	0.29774	85.375	85.162	85.459	0	0.0034776	-3.2397E-05	NaN	10.074	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199470			17472	435	11596	11711							0.12890394539795125
RLRVVHMF	8	Unmodified	_RLRVVHMF_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3091430664062	2	529.308021	1056.60149	-0.077124	-4.0822E-05	2.2787	0.0012061	2.2016	0.0011653	529.3093501716461	29.903	0.2186	29.979	29.882	30.1	0.075403					17	12	2	0	0	0	0.54097	1	4161	4161		0.69038	0.16561	1	13424			17473	856	11597	11712	23469	23469					0.07545225518765619
RLRWYFFT	8	Unmodified	_RLRWYFFT_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.292724609375	2	594.819276	1187.624	0.52788	0.00031399	4.2095	0.0025039	4.7373	0.0028179	594.8215376026352	92.613	0.19976	92.613	92.513	92.713	0					9	7	2	0	0	0	0.35759	1	23295	23295		13.508	5.3524	1	64618	+		17474	11146	11598	11713	23470	23470					0.03769148188007421
RLSHVFVH	8	Unmodified	_RLSHVFVH_					0	0	0		ENST00000470101.1_1_X:19378869-19390989:-|nuORF	ENST00000470101.1_1_X:19378869-19390989:-|nuORF	ENST00000470101.1_1_X:19378869-19390989:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7814636230469	2	497.782693	993.550834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.038	1	23.14	22.64	23.64	0.10178								0	0	0	0.38822	1	2184	2184		0.79363	0	1				17475	6661	11599	11714	23471	23471					0.05380019465417263
RLTRARSLF	9	Unmodified	_RLTRARSLF_					0	0	0			REV__ENSG00000159753|ENST00000334583|CARMIL2	REV__ENSG00000159753|ENST00000334583|CARMIL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7302856445312	2	560.340907	1118.66726	0.61233	0.00034311	-0.21251	-0.00011908	0.39982	0.00022403	560.3406786150239	96.879	0.84232	96.919	96.611	97.454	0.039772					75	40	2	0	0	0	0.25845	1	24375	24375		2.0598	2.0598	1	1021500	+		17476	9834	11600	11715	23472	23472					0.11267337965296065
RLTRARSLF	9	Unmodified	_RLTRARSLF_					0	0	0			REV__ENSG00000159753|ENST00000334583|CARMIL2	REV__ENSG00000159753|ENST00000334583|CARMIL2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	560.340907	1118.66726	0.52622	0.00029486	-0.16958	-9.5023E-05	0.35664	0.00019984	560.3407031417414	96.885	0.86021	96.885	96.578	97.438	0	-0.017076	2.2733E-05	NaN	4.756	77	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1114100	+		17477	9834	11600	11715							0.11267337965296065
RLVAQLDTEG	10	Unmodified	_RLVAQLDTEG_					0	0	0		nc|ENSG00000162729|Q969P0-2|IGSF8;nc|ENSG00000162729|Q969P0-3|IGSF8;ENSG00000162729|ENST00000314485|IGSF8	nc|ENSG00000162729|Q969P0-2|IGSF8	nc|ENSG00000162729|Q969P0-2|IGSF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.298828125	2	551.29857	1100.58259	0.34893	0.00019236	-0.42601	-0.00023486	-0.077087	-4.2498E-05	551.2983180602864	17.061	0.24382	17.139	17.034	17.278	0.077806					48	30	2	0	0	0	0.4753	1	793	793		0	0	1	31699			17478	3853	11601	11716	23473	23473					0.0363192263801011
RLVKQKDEY	9	Unmodified	_RLVKQKDEY_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8300170898438	2	589.830037	1177.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.446	1	30.521	30.021	31.021	0.075403								0	0	0	0.2927	1	4307	4307		0.52476	0	1		+		17479	10821	11602	11717	23474	23474					0.0638048842608896
RLVLGAGF	8	Unmodified	_RLVLGAGF_					0	0	0		ENST00000529503.5_1_8:145137494-145138312:+|nuORF	ENST00000529503.5_1_8:145137494-145138312:+|nuORF	ENST00000529503.5_1_8:145137494-145138312:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.7550048828125	2	416.755613	831.496673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.341	1	64.412	63.912	64.912	0.071014								0	0	0	0.38822	1	14540	14540		2.8892	0	1				17480	7019	11603	11718	23475	23475					0.07418427313848497
RLVMMYLP	8	Unmodified	_RLVMMYLP_					0	0	0			REV__ENST00000462770.5_1_3:133661447-133748739:-|nuORF	REV__ENST00000462770.5_1_3:133661447-133748739:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.256103515625	2	511.779916	1021.54528	0.11424	5.8468E-05	-0.38066	-0.00019481	-0.26642	-0.00013635	511.7795747778308	34.957	0.37207	35.036	34.827	35.199	0.078827					24	14	2	0	0	0	0.3576	1	5676	5676		0.79363	0	1	34492	+		17481	10352	11604	11719	23476	23476					0.035368365670706226
RLVSPSVHWY	10	Unmodified	_RLVSPSVHWY_					0	0	0		ENST00000503513.5_1_5:39394445-39423859:-|nuORF	ENST00000503513.5_1_5:39394445-39423859:-|nuORF	ENST00000503513.5_1_5:39394445-39423859:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3009643554688	2	622.332747	1242.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.583	1	60.656	60.156	61.156	0.073421								0	0	0	0.33877	1	13398	13398		1.6526	0	1				17482	6872	11605	11720	23477	23477					0.039322120085671486
RLWGKYPYF	9	Unmodified	_RLWGKYPYF_					0	0	0		ENST00000469686.5_1_3:9958999-9959435:+|nuORF	ENST00000469686.5_1_3:9958999-9959435:+|nuORF	ENST00000469686.5_1_3:9958999-9959435:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.55364990234375	3	410.553715	1228.63931	0.23395	9.6049E-05	-0.20219	-8.3009E-05	0.03176	1.3039E-05	410.5535560977894	69.869	1.3284	69.929	69.641	70.969	0.060562					152	53	4	0	0	0	0.31389	2	16417	16417;16481		4.897	0.70751	1	1003200			17483	6659	11606	11721	23478;23479	23478					0.034140149852191826
RLWWMYSH	8	Unmodified	_RLWWMYSH_					0	0	0			REV__ENST00000401050.7_1_1:53099138-53105680:+|nuORF	REV__ENST00000401050.7_1_1:53099138-53105680:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7809448242188	2	589.781836	1177.54912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.216	1	25.216	24.716	25.716	0								0	0	0	0.38822	1	2911	2911		0.69038	0.16561	1		+		17484	11752	11607	11722	23480	23480					-0.03255357614852983
RLYGNPNTL	9	Unmodified	_RLYGNPNTL_					0	0	0		TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7433471679688	2	524.282723	1046.55089	0.12577	6.5939E-05	-0.079215	-4.1531E-05	0.046555	2.4408E-05	524.2822819389953	39.046	0.56334	39.046	38.844	39.407	0					39	20	3	0	0	0	0.24929	1	7010	7010		9.3831	2.0939	1	54931			17485	2268	11608	11723	23481	23481					0.02947974674748366
RLYGNPNTL	9	Unmodified	_RLYGNPNTL_					0	0	0		TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2826538085938	2	524.282723	1046.55089	0.14069	7.3761E-05	0.035236	1.8474E-05	0.17593	9.2235E-05	524.2826017136105	38.949	0.57708	39.036	38.835	39.412	0.08688					38	22	3	0	0	0	0.27929	1	6844	6844		9.3831	3.1773	1	47935			17486	2268	11608	11723	23482	23482					0.02947974674748366
RLYKMLCHVF	10	Unmodified	_RLYKMLCHVF_					0	0	0		ENST00000590064.1_1_19:3753732-3753969:-|nuORF;ENST00000588984.5_1_19:3751026-3754498:-|nuORF;ENSG00000011132|ENST00000316757|APBA3	ENST00000590064.1_1_19:3753732-3753969:-|nuORF	ENST00000590064.1_1_19:3753732-3753969:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.234375	3	437.235111	1308.6835	-0.059013	-2.5803E-05	-0.98107	-0.00042896	-1.0401	-0.00045476	437.23452090111164	45.137	1.1304	45.137	44.909	46.039	0					102	39	4	0	0	0	0.45632	1	8964	8964		3.5871	0.5148	1	480060			17487	424	11609	11724	23483	23483					0.041509598155471394
RLYKMLCHVF	10	Unmodified	_RLYKMLCHVF_					0	0	0		ENST00000590064.1_1_19:3753732-3753969:-|nuORF;ENST00000588984.5_1_19:3751026-3754498:-|nuORF;ENSG00000011132|ENST00000316757|APBA3	ENST00000590064.1_1_19:3753732-3753969:-|nuORF	ENST00000590064.1_1_19:3753732-3753969:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.90313720703125	3	437.235111	1308.6835	-0.088055	-3.8501E-05	-0.60258	-0.00026347	-0.69064	-0.00030197	437.2347678521132	45.198	1.2257	45.286	44.879	46.105	0.08754					148	47	5	0	0	0	0.45632	1	8773	8773		3.5871	0.5148	1	455650			17488	424	11609	11724	23484	23484					0.041509598155471394
RLYSRYSRFAK	11	Unmodified	_RLYSRYSRFAK_					0	0	0			REV__nc|ENSG00000197054|Q0D2J5-3|ZNF763	REV__nc|ENSG00000197054|Q0D2J5-3|ZNF763	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.9384765625	3	482.936999	1445.78917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.987	1	51.057	50.557	51.557	0.069874								0	0	0	0.34108	1	10479	10479		0.36667	0.27183	1		+		17489	10839	11610	11725	23485	23485					0.08410335257030965
RLYWALAPLW	10	Unmodified	_RLYWALAPLW_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.86083984375	2	644.863683	1287.71281	0.43071	0.00027775	-2.8011	-0.0018063	-2.3704	-0.0015286	644.8616940672613	54.22	0.28749	54.285	54.14	54.427	0.065128					14	10	2	0	0	0	0.40987	1	11472	11472		10.824	5.0921	1	68059	+		17490	10888	11611	11726	23486	23486					0.08046563427683395
RLYWALAPLW	10	Unmodified	_RLYWALAPLW_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	644.863683	1287.71281	0.56193	0.00036237	-3.6084	-0.0023269	-3.0465	-0.0019646	644.8611515656031	54.222	0.30278	54.222	54.098	54.401	0	-0.031483	-0.00046582	NaN	10.824	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114690	+		17491	10888	11611	11726							0.08046563427683395
RLYWALAPLW	10	Unmodified	_RLYWALAPLW_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	644.863683	1287.71281	0.43071	0.00027775	-2.8011	-0.0018063	-2.3704	-0.0015286	644.8616940672613	54.22	0.28749	54.285	54.14	54.427	0.065128	0.031483	0.00057548	NaN	10.824	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68059	+		17492	10888	11611	11726							0.08046563427683395
RLYWLYWQDWF	11	Unmodified	_RLYWLYWQDWF_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2723999023438	3	559.273388	1674.79833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.25	1	105.25	104.75	105.75	0								0	0	0	0.34212	1	27108	27108		0	0	1		+		17493	12825	11612	11727	23487	23487					-0.012073161773287211
RMCGLMSLI	9	Unmodified	_RMCGLMSLI_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-2|FBXW10	REV__nc|ENSG00000171931|Q5XX13-2|FBXW10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2617797851562	2	512.261033	1022.50751	0.58469	0.00029951	0.82665	0.00042346	1.4113	0.00072298	512.2614396096011	82.33	1.3611	82.33	81.78	83.141	0					78	47	3	0	0	0	0.15282	3	20123	20123;20173;20221		24.021	18.146	1	263100	+		17494	12843	11613	11728	23488;23489;23490	23488					-0.0028399769004181508
RMCGLMSLI	9	Unmodified	_RMCGLMSLI_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-2|FBXW10	REV__nc|ENSG00000171931|Q5XX13-2|FBXW10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2617797851562	2	512.261033	1022.50751	0.3286	0.00016833	1.1023	0.00056465	1.4309	0.00073298	512.2615540939661	82.267	0.88548	82.288	82.018	82.904	0.021744					71	31	3	0	0	0	0.24021	1	20019	20019		13.906	2.2658	1	289570	+		17495	12843	11613	11728	23491	23491					-0.0028399769004181508
RMEKIYYNW	9	Unmodified	_RMEKIYYNW_					0	0	0		tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.88214111328125	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.176	1	95.214	94.714	95.714	0.038872								0	0	0	0.29058	1	23920	23920		0.96228	0.18574	1				17496	13672	11614	11729	23492	23492					-0.016068539630396117
RMFKRHQRLKK	11	Unmodified	_RMFKRHQRLKK_					0	0	0		ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2301025390625	3	509.977023	1526.90924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	107.48	106.98	107.98	0								0	0	0	0.34185	1	27745	27745		0.094841	0	1				17497	942	11615	11730	23493	23493					0.1668604504977793
RMGNWEVSMS	10	Unmodified	_RMGNWEVSMS_					0	0	0			REV__nc|ENSG00000126214|Q07866-2|KLC1	REV__nc|ENSG00000126214|Q07866-2|KLC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7646484375	2	598.762983	1195.51141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.057	1	56.057	55.557	56.557	0								0	0	0	0.10428	1	12159	12159		45.7	9.1934	1		+		17498	12786	11616	11731	23494	23494					-0.07852236662643008
RMGNWEVSMS	10	Unmodified	_RMGNWEVSMS_					0	0	0			REV__nc|ENSG00000126214|Q07866-2|KLC1	REV__nc|ENSG00000126214|Q07866-2|KLC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7646484375	2	598.762983	1195.51141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.124	1	56.124	55.624	56.624	0								0	0	0	0.050215	1	12180	12180		60.074	16.302	1		+		17499	12786	11616	11731	23495	23495					-0.07852236662643008
RMNALFFF	8	Unmodified	_RMNALFFF_					0	0	0			REV__ENST00000254846.9_1_17:7756835-7757354:+|nuORF	REV__ENST00000254846.9_1_17:7756835-7757354:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7442016601562	2	523.26803	1044.52151	0.35877	0.00018773	2.0695	0.0010829	2.4283	0.0012706	523.2691193126092	64.651	0.31544	64.719	64.587	64.902	0.068916					14	11	2	0	0	0	0.3576	1	14624	14624		5.7604	1.0044	1	61757	+		17500	11215	11617	11732	23496	23496					0.0010273912489537906
RMQRVLSLV	9	Unmodified	_RMQRVLSLV_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3126831054688	2	551.331693	1100.64883	0.67455	0.0003719	-1.0054	-0.00055432	-0.33087	-0.00018242	551.3311714601448	98.824	0.23058	98.866	98.724	98.955	0.041931					13	11	2	0	0	0	0.3354	1	25047	25047		2.0598	1.2661	1	71746			17501	532	11618	11733	23497	23497					0.10253459999103143
RMRGMVAI	8	Unmodified	_RMRGMVAI_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000367857.9_1_6:134495759-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.712890625	2	467.259682	932.504811	-0.11454	-5.352E-05	3.2371	0.0015126	3.1225	0.001459	467.26103350174265	34.861	0.39701	34.937	34.799	35.196	0.076244					19	15	2	0	0	0	0.3576	1	5647	5647		2.5775	0	1	43011			17502	7489	11619	11734	23498	23498					0.03585914967334247
RMRSCIVEL	9	Unmodified	_RMRSCIVEL_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7933959960938	2	553.794086	1105.57362	0.61695	0.00034167	-1.2471	-0.00069066	-0.63018	-0.00034899	553.7935004901497	91.892	1.1979	91.892	91.484	92.682	0					104	45	3	0	0	0	0.10543	1	23269	23269		31.268	7.2478	1	494910	+		17503	9483	11620	11735	23499	23499					0.02505534476381399
RMRSKETLQLI	11	Unmodified	_RMRSKETLQLI_					0	0	0			REV__ENST00000372447.7_1_9:132589634-132589790:-|nuORF	REV__ENST00000372447.7_1_9:132589634-132589790:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.93450927734375	3	458.934378	1373.7813	0.41309	0.00018958	0.23031	0.0001057	0.6434	0.00029528	458.9344269517287	47.784	2.2507	47.784	47.144	49.394	0					170	77	3	0	0	0	0.40904	1	9756	9756		2.2527	0	1	202680	+		17504	11608	11621	11736	23500	23500					0.10936439945271559
RMTLIMHCAT	10	Unmodified	_RMTLIMHCAT_					0	0	0		ENST00000446420.2_1_9:96233459-96233558:+|nuORF	ENST00000446420.2_1_9:96233459-96233558:+|nuORF	ENST00000446420.2_1_9:96233459-96233558:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.338134765625	2	588.787946	1175.56134	0.1792	0.00010551	-1.1148	-0.00065641	-0.93564	-0.0005509	588.7871474447542	25.562	0.379	25.653	25.477	25.856	0.091507					50	30	2	0	0	0	0.31803	1	2911	2911		3.2813	0.28607	1	25860			17505	6543	11622	11737	23501	23501					-0.019418252583363937
RMVGKPAWG	9	Unmodified	_RMVGKPAWG_					0	0	0		ENST00000576232.1_1_1:1334974-1335722:+|nuORF	ENST00000576232.1_1_1:1334974-1335722:+|nuORF	ENST00000576232.1_1_1:1334974-1335722:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7820739746094	2	501.271104	1000.52766	0.13734	6.8844E-05	2.7291	0.001368	2.8664	0.0014369	501.27245071984504	35.279	0.34046	35.357	35.199	35.539	0.078827					19	13	2	0	0	0	0.25644	1	5705	5705		3.9444	1.3669	1	26214			17506	7204	11623	11738	23502	23502					0.027412573564333798
RMVGKPAWG	9	Unmodified	_RMVGKPAWG_					0	0	0		ENST00000576232.1_1_1:1334974-1335722:+|nuORF	ENST00000576232.1_1_1:1334974-1335722:+|nuORF	ENST00000576232.1_1_1:1334974-1335722:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	501.271104	1000.52766	0.10107	5.0662E-05	2.8111	0.0014091	2.9121	0.0014598	501.27252763255365	35.331	0.35707	35.331	35.18	35.537	0	-0.013375	1.9295E-05	NaN	3.9444	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26630			17507	7204	11623	11738							0.027412573564333798
RMVVRHARRL	10	Unmodified	_RMVVRHARRL_					0	0	0		ENST00000552943.5_1_16:704926-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF;ENST00000546516.5_1_16:705169-713132:+|nuORF;ENSG00000161996|ENST00000293879|WDR90	ENST00000552943.5_1_16:704926-706047:+|nuORF	ENST00000552943.5_1_16:704926-706047:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.3932495117188	2	647.393482	1292.77241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.92	1	104.96	104.46	105.46	0.034004								0	0	0	0.33892	1	26837	26837		1.4819	0	1				17508	3809	11624	11739	23503	23503					0.13773555890088574
RMYDAKRFTD	10	Unmodified	_RMYDAKRFTD_					0	0	0		nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-5|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B;ENSG00000218305|ENST00000650262|CDC14C	nc|ENSG00000081377|O60729-2|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8823547363281	3	434.880162	1301.61866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.349	1	79.349	78.849	79.849	0								0	0	0	0.33894	1	19264	19264		1.4551	0.24029	1				17509	906	11625	11740	23504	23504					-0.02008943456758061
RMYDLSYFA	9	Unmodified	_RMYDLSYFA_					0	0	0			REV__nc|ENSG00000183087|Q14393-5|GAS6	REV__nc|ENSG00000183087|Q14393-5|GAS6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2723999023438	2	583.270967	1164.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.01	1	32.01	31.51	32.51	0								0	0	0	0.28631	1	4894	4894		1.8442	0.88196	1		+		17510	10585	11626	11741	23505	23505					-0.04830207154054733
RMYFRDKF	8	Unmodified	_RMYFRDKF_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7742919921875	2	581.794943	1161.57533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.076	1	68.139	67.639	68.639	0.063507								0	0	0	0.38822	1	15667	15667		2.5775	0	1		+		17511	10823	11627	11742	23506	23506					0.00100911556637584
RMYKRERSE	9	Unmodified	_RMYKRERSE_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8214721679688	2	627.822221	1253.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.127	1	17.127	16.627	17.627	0								0	0	0	0.2927	1	863	863		0.52476	0	1		+		17512	9072	11628	11743	23507	23507					0.013218786374181946
RNACEMCF	8	Unmodified	_RNACEMCF_					0	0	0			REV__ENST00000558133.1_1_15:82335503-82336997:-|nuORF	REV__ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.1880798339844	2	487.188065	972.361578	0.18617	9.0699E-05	-0.17309	-8.4327E-05	0.01308	6.3724E-06	487.1879920771555	53.037	0.42619	53.103	52.879	53.306	0.06543					30	19	2	0	0	0	0.54081	1	11103	11103		0.79363	0	1	94298	+		17513	10601	11629	11744	23508	23508					-0.12570880206089896
RNAIFHLL	8	Unmodified	_RNAIFHLL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.29241943359375	2	492.292894	982.571235	0.82069	0.00040402	-1.5195	-0.00074802	-0.69877	-0.000344	492.2921164936908	81.697	0.44191	81.697	81.461	81.903	0					24	14	2	0	0	0	0.48651	1	19988	19988		14.582	0	1	79165			17514	3463	11630	11745	23509	23509					0.07925190125229165
RNDNRFQQPQ	10	Unmodified	_RNDNRFQQPQ_					0	0	0			REV__SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant	REV__SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8820495605469	3	434.881441	1301.62249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.478	1	51.478	50.978	51.978	0								0	0	0	0.33882	1	10762	10762		1.5923	0.26264	1		+		17515	9752	11631	11746	23510	23510					-0.01625137638666274
RNDVLYLQL	9	Unmodified	_RNDVLYLQL_					0	0	0			REV__ENSG00000162409|ENST00000371244|PRKAA2	REV__ENSG00000162409|ENST00000371244|PRKAA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3193359375	2	567.319306	1132.62406	0.14111	8.0052E-05	0.03601	2.0429E-05	0.17712	0.00010048	567.3192426043067	59.884	0.66214	59.957	59.735	60.397	0.072338					46	24	3	0	0	0	0.11547	1	13194	13194		29.082	1.8583	1	308890	+		17516	9887	11632	11747	23511	23511					0.06305103397380662
RNEYLCYF	8	Unmodified	_RNEYLCYF_					0	0	0			REV__NLRP11|p.E554K|1|0.15|ENSG00000179873|chr19:55808950-55808950|C/T|missense_variant	REV__NLRP11|p.E554K|1|0.15|ENSG00000179873|chr19:55808950-55808950|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.3076782226562	2	554.250034	1106.48552	0.42583	0.00023602	0.40089	0.0002222	0.82673	0.00045821	554.2500003633784	95.228	0.51785	95.267	94.911	95.429	0.038872					50	21	3	0	0	0	0.35713	1	23890	23890		14.582	2.0501	1	243260	+		17517	10492	11633	11748	23512	23512					-0.06346762842622411
RNFENISF	8	Unmodified	_RNFENISF_					0	0	0		tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.74267578125	2	513.753798	1025.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.347	1	70.347	69.847	70.847	0								0	0	0	0.3858	1	16512	16512		18.135	0	1				17518	13573	11634	11749	23513	23513					-0.01868287250681533
RNFLELTE	8	Unmodified	_RNFLELTE_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENST00000588629.1_1_17:40610935-40622311:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2701416015625	2	511.269281	1020.52401	-0.23734	-0.00012134	-0.27535	-0.00014078	-0.51269	-0.00026212	511.26921575304175	23.663	0.34651	23.663	23.516	23.862	0					66	30	4	0	0	0	0.54097	1	2448	2448		0.69038	0	1	35662			17519	509	11635	11750	23514	23514					0.014568660635632114
RNFRKIYLF	9	Unmodified	_RNFRKIYLF_					0	0	0		ENST00000313695.11_2_1:155917458-155917590:-|nuORF	ENST00000313695.11_2_1:155917458-155917590:-|nuORF	ENST00000313695.11_2_1:155917458-155917590:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5802917480469	3	419.580264	1255.71896	0.02971	1.2466E-05	0.042468	1.7819E-05	0.072177	3.0284E-05	419.58018760838064	60.124	0.92074	60.196	59.988	60.909	0.072338					87	32	4	0	0	0	0.33028	1	13392	13392		2.7352	0.82882	1	893550			17520	6010	11636	11751	23515	23515					0.10133081659205345
RNHLGRKLRRR	11	Unmodified	_RNHLGRKLRRR_					0	0	0		ENST00000530731.5_1_11:124495676-124501136:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1	ENST00000530731.5_1_11:124495676-124501136:+|nuORF	ENST00000530731.5_1_11:124495676-124501136:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.9748229980469	3	487.974781	1460.90251	-0.15179	-7.4068E-05	0.20932	0.00010214	0.057537	2.8077E-05	487.97483272430645	106.46	0.37321	106.46	106.29	106.66	0					85	36	3	0	0	0	0.4167	1	27441	27441		0.50596	0.4226	1	159250			17521	7024	11637	11752	23516	23516					0.1904986821341481
RNHLGRKLRRR	11	Unmodified	_RNHLGRKLRRR_					0	0	0		ENST00000530731.5_1_11:124495676-124501136:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1	ENST00000530731.5_1_11:124495676-124501136:+|nuORF	ENST00000530731.5_1_11:124495676-124501136:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.9747619628906	3	487.974781	1460.90251	0.14475	7.0635E-05	-0.27893	-0.00013611	-0.13418	-6.5478E-05	487.97463011643987	106.42	0.47654	106.45	106.27	106.75	0.025711					109	50	3	0	0	0	0.4185	1	27242	27242		0.094841	0.094841	1	166470			17522	7024	11637	11752	23517	23517					0.1904986821341481
RNIKIKKKKK	10	Unmodified	_RNIKIKKKKK_					0	0	0		tr|U7SV77|U7SV77_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01546PE=4SV=1	tr|U7SV77|U7SV77_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01546PE=4SV=1	tr|U7SV77|U7SV77_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01546PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.452880859375	2	642.453531	1282.89251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.436	1	54.501	54.001	55.001	0.065128								0	0	0	0.34018	1	11527	11527		0	0	1				17523	13625	11638	11753	23518	23518					0.26237867435452245
RNKDTMSRLK	10	Unmodified	_RNKDTMSRLK_					0	0	0			REV__CXCR4|p.Y76N|1|0.58|ENSG00000121966|chr2:136115702-136115702|A/T|missense_variant	REV__CXCR4|p.Y76N|1|0.58|ENSG00000121966|chr2:136115702-136115702|A/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.914794921875	3	416.899556	1247.67684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.537	1	29.537	29.037	30.037	0								0	0	0	0.33975	1	4160	4160		0.50596	0.13928	1		+		17524	7868	11639	11754	23519	23519					0.06290738188522482
RNKMREAL	8	Unmodified	_RNKMREAL_					0	0	0			REV__nc|ENSG00000166578|Q96DY2-3|IQCD	REV__nc|ENSG00000166578|Q96DY2-3|IQCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.28466796875	2	509.284743	1016.55493	0.327	0.00016654	-0.70192	-0.00035748	-0.37491	-0.00019094	509.2842746571201	76.183	0.9579	76.183	75.937	76.895	0					119	46	3	0	0	0	0.46036	1	18443	18443		18.135	3.2967	1	3436600	+		17525	10084	11640	11755	23520	23520					0.04731740896829706
RNKMREAL	8	Unmodified	_RNKMREAL_					0	0	0			REV__nc|ENSG00000166578|Q96DY2-3|IQCD	REV__nc|ENSG00000166578|Q96DY2-3|IQCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2840881347656	2	509.284743	1016.55493	0.34019	0.00017325	-0.6155	-0.00031347	-0.27532	-0.00014022	509.2843476134995	76.147	1.0315	76.186	75.908	76.94	0.03923					106	48	3	0	0	0	0.49441	1	18304	18304		13.508	1.8676	1	3135000	+		17526	10084	11640	11755	23521	23521					0.04731740896829706
RNKYSLFP	8	Unmodified	_RNKYSLFP_					0	0	0			REV__tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	REV__tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2818603515625	2	512.782359	1023.55016	0.42117	0.00021597	2.0257	0.0010387	2.4468	0.0012547	512.7822630323725	81.697	0.93818	81.719	81.308	82.246	0.021866					58	33	3	0	0	0	0.35759	1	19903	19903		13.508	0.97634	1	116830	+		17527	13274	11641	11756	23522	23522					0.039331800256945826
RNLMNLMT	8	Unmodified	_RNLMNLMT_					0	0	0			REV__ENSG00000106571|ENST00000395925|GLI3	REV__ENSG00000106571|ENST00000395925|GLI3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2392578125	2	496.75443	991.494306	0.48784	0.00024234	3.0021	0.0014913	3.4899	0.0017336	496.75581972573724	53.311	0.29698	53.377	53.222	53.519	0.06543					21	14	2	0	0	0	0.3576	1	11138	11138		4.756	0.42677	1	58037	+		17528	8578	11642	11757	23523	23523					-0.0017811247777217432
RNLQAWVYLV	10	Unmodified	_RNLQAWVYLV_					0	0	0			REV__ENST00000524119.1_1_8:124031433-124042893:-|nuORF	REV__ENST00000524119.1_1_8:124031433-124042893:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5745849609375	3	421.239907	1260.69789	0.15908	6.701E-05	1.3309	0.00056063	1.49	0.00062764	421.57496969160565	37.699	1.4968	37.783	37.271	38.768	0.084476					99	53	3	0	0	0	0.47288	1	6376	6376		0.15932	0	1	36425	+		17529	9263	11643	11758	23524	23524					0.0779707155968481
RNLRAAAA	8	Unmodified	_RNLRAAAA_					0	0	0			REV__ENSG00000137504|ENST00000527447|CREBZF	REV__ENSG00000137504|ENST00000527447|CREBZF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.2453918457031	2	421.751393	841.488233	0.18291	7.7143E-05	-0.26115	-0.00011014	-0.078237	-3.2997E-05	421.75132442629035	73.733	0.39604	73.785	73.541	73.937	0.052574					22	14	2	0	0	0	0.3576	1	17371	17371		0.79363	0	1	46984	+		17530	9277	11644	11759	23525	23525					0.06114873397211795
RNLRKALL	8	Unmodified	_RNLRKALL_					0	0	0		nc|ENSG00000133119|P40938-2|RFC3;ENSG00000133119|ENST00000380071|RFC3	nc|ENSG00000133119|P40938-2|RFC3	nc|ENSG00000133119|P40938-2|RFC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.8477478027344	2	492.327268	982.639983	-0.010309	-5.0755E-06	-0.90208	-0.00044412	-0.91239	-0.0004492	492.3269252021074	113.26	0.077766	113.26	113.22	113.3	0					13	10	2	0	0	0	0.3576	1	29015	29015		0.69038	0	1	45530			17531	2617	11645	11760	23526	23526					0.14796854424923822
RNLRKALL	8	Unmodified	_RNLRKALL_					0	0	0		nc|ENSG00000133119|P40938-2|RFC3;ENSG00000133119|ENST00000380071|RFC3	nc|ENSG00000133119|P40938-2|RFC3	nc|ENSG00000133119|P40938-2|RFC3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.327268	982.639983	0.29617	0.00014581	-0.95115	-0.00046828	-0.65498	-0.00032246	492.3268651824407	113.26	0.10231	113.27	113.18	113.29	0.013809	0.0042456	-2.0871E-05	NaN	0.69038	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73302			17532	2617	11645	11760							0.14796854424923822
RNLTRVMI	8	Unmodified	_RNLTRVMI_					0	0	0		ENST00000270443.8_1_19:53472241-53472481:-|nuORF	ENST00000270443.8_1_19:53472241-53472481:-|nuORF	ENST00000270443.8_1_19:53472241-53472481:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.814453125	2	501.797486	1001.58042	0.4898	0.00024578	-0.42435	-0.00021294	0.06545	3.2843E-05	501.7968523883285	92.111	0.39633	92.111	91.897	92.294	0					30	14	3	0	0	0	0.53026	1	23140	23140		7.9102	2.1497	1	121710			17533	5911	11646	11761	23527	23527					0.07969215419257125
RNLTRVMI	8	Unmodified	_RNLTRVMI_					0	0	0		ENST00000270443.8_1_19:53472241-53472481:-|nuORF	ENST00000270443.8_1_19:53472241-53472481:-|nuORF	ENST00000270443.8_1_19:53472241-53472481:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	501.797486	1001.58042	0.40026	0.00020085	-0.18218	-9.1418E-05	0.21808	0.00010943	501.79708266010954	92.036	0.48405	92.072	91.829	92.314	0.03653	-0.019327	8.9269E-05	NaN	7.9102	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124600			17534	5911	11646	11761							0.07969215419257125
RNMKIIFC	8	Unmodified	_RNMKIIFC_					0	0	0			REV__ENSG00000186009|ENST00000335288|ATP4B	REV__ENSG00000186009|ENST00000335288|ATP4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7741088867188	2	512.775165	1023.53578	-0.24031	-0.00012323	-0.92344	-0.00047352	-1.1638	-0.00059675	512.7745446218383	22.604	0.26667	22.604	22.44	22.707	0					38	20	2	0	0	0	0.53817	1	2192	2192		2.5775	0.73324	1	21055	+		17535	10693	11647	11762	23528	23528					0.024950682815529035
RNMRNFVL	8	Unmodified	_RNMRNFVL_					0	0	0		ENSG00000177108|ENST00000319374|ZDHHC22	ENSG00000177108|ENST00000319374|ZDHHC22	ENSG00000177108|ENST00000319374|ZDHHC22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.28662109375	2	525.287285	1048.56002	0.36928	0.00019398	-0.69121	-0.00036308	-0.32192	-0.0001691	525.2868799090535	91.348	0.9865	91.348	90.911	91.897	0					79	35	4	0	0	0	0.45077	1	23001	23001		19.439	5.5329	1	1379100			17536	4691	11648	11763	23529	23529					0.037680447594539146
RNMRNFVL	8	Unmodified	_RNMRNFVL_					0	0	0		ENSG00000177108|ENST00000319374|ZDHHC22	ENSG00000177108|ENST00000319374|ZDHHC22	ENSG00000177108|ENST00000319374|ZDHHC22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2871704101562	2	525.287285	1048.56002	0.080414	4.2241E-05	-0.32866	-0.00017264	-0.24825	-0.0001304	525.287092300086	91.264	0.99693	91.299	90.994	91.991	0.035446					74	35	4	0	0	0	0.49441	2	22788	22788;22833		13.508	1.8676	1	1263200			17537	4691	11648	11763	23530;23531	23530					0.037680447594539146
RNNEKTIT	8	Unmodified	_RNNEKTIT_					0	0	0			REV__ENST00000529869.1_1_11:117104988-117109857:+|nuORF	REV__ENST00000529869.1_1_11:117104988-117109857:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2533264160156	2	488.26453	974.514508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.875	1	27.875	27.375	28.375	0								0	0	0	0.38822	1	3673	3673		4.3292	0	1		+		17538	10110	11649	11764	23532	23532					0.026230977780414833
RNNPRSTL	8	Unmodified	_RNNPRSTL_					0	0	0		ENST00000395715.7_1_8:116680788-116680932:-|nuORF	ENST00000395715.7_1_8:116680788-116680932:-|nuORF	ENST00000395715.7_1_8:116680788-116680932:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2659912109375	2	479.264865	956.515176	-0.11888	-5.6975E-05	2.8173	0.0013502	2.6984	0.0012933	479.2662543009227	71.991	0.42738	72.047	71.893	72.321	0.055939					18	14	2	0	0	0	0.53202	1	16874	16874		6.7232	0.51738	1	97203			17539	6336	11650	11765	23533	23533					0.035179372177594814
RNNPRSTL	8	Unmodified	_RNNPRSTL_					0	0	0		ENST00000395715.7_1_8:116680788-116680932:-|nuORF	ENST00000395715.7_1_8:116680788-116680932:-|nuORF	ENST00000395715.7_1_8:116680788-116680932:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	479.264865	956.515176	-0.22085	-0.00010585	3.2416	0.0015536	3.0208	0.0014478	479.2664400402243	72.055	0.4276	72.055	71.889	72.317	0	0.0043158	0.00014172	NaN	6.7232	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157000			17540	6336	11650	11765							0.035179372177594814
RNNPRSTL	8	Unmodified	_RNNPRSTL_					0	0	0		ENST00000395715.7_1_8:116680788-116680932:-|nuORF	ENST00000395715.7_1_8:116680788-116680932:-|nuORF	ENST00000395715.7_1_8:116680788-116680932:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	479.264865	956.515176	-0.11888	-5.6975E-05	2.8173	0.0013502	2.6984	0.0012933	479.2662543009227	71.991	0.42738	72.047	71.893	72.321	0.055939	-0.0043158	-0.000265	NaN	6.7232	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97203			17541	6336	11650	11765							0.035179372177594814
RNQDMSRQY	9	Unmodified	_RNQDMSRQY_					0	0	0		nc|ENSG00000135127|Q6ZP65|BICDL1;ENSG00000135127|ENST00000548673|BICDL1	nc|ENSG00000135127|Q6ZP65|BICDL1	nc|ENSG00000135127|Q6ZP65|BICDL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2731323242188	2	599.275103	1196.53565	-0.063269	-3.7915E-05	-3.5836	-0.0021475	-3.6468	-0.0021855	599.2730752775398	33.009	0.4332	33.083	32.914	33.347	0.074322					22	17	2	0	0	0	0.32831	1	5074	5074		2.9952	0.26005	1	29369			17542	2716	11651	11766	23534	23534					-0.05475260184744002
RNRRLHLTRRP	11	Unmodified	_RNRRLHLTRRP_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.3031005859375	3	492.302786	1473.88653	0.32384	0.00015943	0.26831	0.00013209	0.59215	0.00029152	492.30285094184467	102.21	0.65179	102.21	102.01	102.66	0					104	43	3	0	0	0	0.4185	1	26253	26253		0.094841	0	1	309160	+		17543	10092	11652	11767	23535	23535					0.1685416197651648
RNRRVTRRK	9	Unmodified	_RNRRVTRRK_					0	0	0		ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3934326171875	2	621.392328	1240.7701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.936	1	99.979	99.479	100.48	0.042839								0	0	0	0.29233	1	25371	25371		0.6015	0	1				17544	3829	11653	11768	23536	23536					0.15934843476634342
RNRSLDAQTID	11	Unmodified	_RNRSLDAQTID_					0	0	0			REV__ENST00000485583.1_1_7:100179936-100183723:-|nuORF	REV__ENST00000485583.1_1_7:100179936-100183723:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.8323364257812	2	644.83384	1287.65313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.113	1	99.155	98.655	99.655	0.042839								0	0	0	0.33362	1	25119	25119		2.9952	1.3426	1		+		17545	8212	11654	11769	23537	23537					0.02080595955726494
RNSQWVPTL	9	Unmodified	_RNSQWVPTL_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1;ENST00000491967.1_1_22:24135798-24143581:+|nuORF	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2843627929688	2	550.795998	1099.57744	0.46423	0.0002557	-0.052644	-2.8996E-05	0.41159	0.0002267	550.7959320504665	37.872	1.3535	37.956	37.684	39.038	0.084476					140	49	4	0	0	0	0.30397	1	6729	6729		6.2058	1.8765	1	719760			17546	1142	11655	11770	23538	23538					0.03163663566078867
RNSQWVPTL	9	Unmodified	_RNSQWVPTL_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1;ENST00000491967.1_1_22:24135798-24143581:+|nuORF	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2843017578125	2	550.795998	1099.57744	0.35922	0.00019786	0.61486	0.00033866	0.97408	0.00053652	550.7962877088827	39.045	0.15875	39.132	39.04	39.199	0.08688					8	5	2	0	0	0	0.33849	1	6870	6870		1.6526	0	1	18853			17547	1142	11655	11770	23539	23539					0.03163663566078867
RNYRYELM	8	Unmodified	_RNYRYELM_					0	0	0		ENSG00000144476|ENST00000272928|ACKR3	ENSG00000144476|ENST00000272928|ACKR3	ENSG00000144476|ENST00000272928|ACKR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.2916259765625	2	572.782033	1143.54951	-0.12541	-7.1831E-05	1.5243	0.00087311	1.3989	0.00080128	572.7827293569433	28.821	0.19933	28.899	28.744	28.943	0.078287					22	13	2	0	0	0	0.3576	1	3808	3808		0.69038	0.16561	1	12438			17548	3211	11656	11771	23540	23540					-0.01651982685666553
RPAQVEPLL	9	Unmodified	_RPAQVEPLL_					0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.80328369140625	2	511.803291	1021.59203	0.38346	0.00019625	-0.2426	-0.00012416	0.14086	7.2091E-05	511.8030566240115	47.122	0.79351	47.122	46.878	47.672	0					68	26	4	0	0	0	0.018465	4	9466	9417;9466;9511;9562		59.368	22.862	1	761810			17549	3343	11657	11772	23541;23542;23543;23544	23542					0.08209735714228827
RPAQVEPLL	9	Unmodified	_RPAQVEPLL_					0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.80328369140625	2	511.803291	1021.59203	0.34539	0.00017677	-0.23161	-0.00011854	0.11379	5.8236E-05	511.8030583092494	47.03	0.62375	47.113	46.91	47.534	0.083096					64	23	4	0	0	0	0.064247	3	9301	9254;9301;9347		40.239	15.248	1	749810			17550	3343	11657	11772	23545;23546;23547	23546					0.08209735714228827
RPAVLDPAL	9	Unmodified	_RPAVLDPAL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.28466796875	2	476.284734	950.554916	-0.067097	-3.1957E-05	0.024858	1.1839E-05	-0.04224	-2.0118E-05	476.2847508860524	49.617	0.57374	49.617	49.394	49.968	0					40	19	3	0	0	0	0.18398	2	10221	10174;10221		20.415	1.3108	1	227800			17551	360	11658	11773	23548;23549	23549					0.07766064168458797
RPAVLDPAL	9	Unmodified	_RPAVLDPAL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.28515625	2	476.284734	950.554916	-0.10138	-4.8286E-05	0.10237	4.8758E-05	0.00099263	4.7278E-07	476.2847594371016	49.553	0.44336	49.63	49.428	49.871	0.076603					34	15	3	0	0	0	0.18398	3	10020	10020;10028;10080		20.415	1.3108	1	177460			17552	360	11658	11773	23550;23551;23552	23550					0.07766064168458797
RPCSAMAGDF	10	Unmodified	_RPCSAMAGDF_					0	0	0		ENST00000526142.5_1_11:419653-429752:-|nuORF	ENST00000526142.5_1_11:419653-429752:-|nuORF	ENST00000526142.5_1_11:419653-429752:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7465209960938	2	527.725869	1053.43719	0.80048	0.00042243	0.66282	0.00034979	1.4633	0.00077222	527.7259438068977	81.099	0.47264	81.099	80.902	81.374	0					26	15	2	0	0	0	0.31794	1	19739	19739		3.5965	0	1	177070			17553	6988	11659	11774	23553	23553					-0.08739579754160332
RPDAEKKEM	9	Unmodified	_RPDAEKKEM_					0	0	0		ENST00000487321.1_1_2:219114510-219118635:+|nuORF;ENSG00000163466|ENST00000315717|ARPC2	ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENST00000487321.1_1_2:219114510-219118635:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2792358398438	2	552.279323	1102.54409	0.38387	0.000212	-0.056805	-3.1372E-05	0.32706	0.00018063	552.279087772806	15.811	0.15416	15.884	15.82	15.975	0.072399					27	19	2	0	0	0	0.32614	1	558	558		3.2813	1.6287	1	13268			17554	3903	11660	11775	23554	23554					-0.0030770626813136914
RPDDVPLSL	9	Unmodified	_RPDDVPLSL_					0	0	0		ENST00000473880.5_1_7:102108514-102108640:+|nuORF;ENSG00000161036|ENST00000292616|LRWD1	ENST00000473880.5_1_7:102108514-102108640:+|nuORF	ENST00000473880.5_1_7:102108514-102108640:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2774353027344	2	506.277106	1010.53966	0.49806	0.00025216	-0.27912	-0.00014131	0.21894	0.00011085	506.27695561112625	54.89	0.42619	54.89	54.614	55.04	0					30	15	3	0	0	0	0.2546	1	11778	11778		12.241	0	1	117380			17555	3790	11661	11776	23555	23555					0.034811525806162535
RPDDYLYSL	9	Unmodified	_RPDDYLYSL_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2792358398438	2	571.279846	1140.54514	0.43457	0.00024826	-0.94609	-0.00054048	-0.51152	-0.00029222	571.2790471654168	60.07	0.80669	60.07	59.836	60.643	0					61	28	4	0	0	0	0.064247	2	13363	13363;13411		40.239	16.219	1	568270			17556	5069	11662	11777	23556;23557	23556					-0.019511686276018736
RPDDYLYSL	9	Unmodified	_RPDDYLYSL_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.279296875	2	571.279846	1140.54514	0.16473	9.4104E-05	-0.68883	-0.00039352	-0.52411	-0.00029941	571.2792321492848	60.011	0.68228	60.083	59.779	60.461	0.072338					49	19	4	0	0	0	0.047066	2	13204	13204;13253		43.982	19.961	1	641520			17557	5069	11662	11777	23558;23559	23558					-0.019511686276018736
RPDKKQRMVN	10	Unmodified	_RPDKKQRMVN_					0	0	0		ENST00000310958.10_2_15:55648420-55648633:-|nuORF;nc|ENSG00000260916|Q9ULG6-3|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	ENST00000310958.10_2_15:55648420-55648633:-|nuORF	ENST00000310958.10_2_15:55648420-55648633:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.0816955566406	3	424.571551	1270.69282	0.34886	0.00014811	0.012268	5.2088E-06	0.36112	0.00015332	424.5715892503036	50.88	0.57764	50.88	50.514	51.092	0					33	19	2	0	0	0	0.31852	1	10592	10592		0.69767	0.07084	1	55694			17558	5714	11663	11778	23560	23560					0.06830444425440874
RPDKKQRMVN	10	Unmodified	_RPDKKQRMVN_					0	0	0		ENST00000310958.10_2_15:55648420-55648633:-|nuORF;nc|ENSG00000260916|Q9ULG6-3|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	ENST00000310958.10_2_15:55648420-55648633:-|nuORF	ENST00000310958.10_2_15:55648420-55648633:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	424.571551	1270.69282	0.12856	5.4582E-05	0.5615	0.0002384	0.69006	0.00029298	424.5717895631381	50.479	0.276	50.552	50.444	50.72	0.07312	-0.16415	0.00039467	NaN	0.69767	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37134			17559	5714	11663	11778							0.06830444425440874
RPDMLDTI	8	Unmodified	_RPDMLDTI_					0	0	0			REV__ENST00000557586.1_1_15:20467168-20482152:-|nuORF	REV__ENST00000557586.1_1_15:20467168-20482152:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7474365234375	2	480.744585	959.474617	0.035233	1.6938E-05	2.0635	0.00099202	2.0987	0.001009	480.7454121256652	77.454	1.3596	77.454	76.975	78.335	0					130	53	3	0	0	0	0.30285	1	18856	18856		34.402	2.2848	1	1304500	+		17560	12467	11664	11779	23561	23561					-0.006741652168898327
RPDPAGHLTL	10	Unmodified	_RPDPAGHLTL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000562067.5_1_15:75648249-75648696:-|nuORF;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7959594726562	2	538.795998	1075.57744	0.50606	0.00027266	-0.4231	-0.00022796	0.082963	4.47E-05	538.7957277718488	37.855	0.48731	37.94	37.772	38.26	0.084476					26	17	2	0	0	0	0.33926	1	6534	6534		18.373	5.3306	1	31854			17561	3010	11665	11780	23562	23562					0.04267663566088231
RPDPAGHLTL	10	Unmodified	_RPDPAGHLTL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000562067.5_1_15:75648249-75648696:-|nuORF;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	538.795998	1075.57744	0.37241	0.00020065	-0.13609	-7.3323E-05	0.23632	0.00012733	538.7958672960511	38.007	0.4365	38.007	37.837	38.274	0	0.033478	0.00017751	NaN	18.373	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27101			17562	3010	11665	11780							0.04267663566088231
RPDPNFDAL	9	Unmodified	_RPDPNFDAL_					0	0	0		ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000204227|Q06587-2|RING1;ENSG00000204227|ENST00000374656|RING1	ENSG00000121481|ENST00000367510|RNF2	ENSG00000121481|ENST00000367510|RNF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7592163085938	2	522.759081	1043.50361	0.18745	9.799E-05	-0.0021229	-1.1098E-06	0.18533	9.6881E-05	522.7591883405123	48.589	1.0289	48.589	48.224	49.253	0					66	35	3	0	0	0	0.19307	1	9959	9959		19.362	9.288	1	241000			17563	2154	11666	11781	23563	23563					-0.016403045962533724
RPDPNFDAL	9	Unmodified	_RPDPNFDAL_					0	0	0		ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000204227|Q06587-2|RING1;ENSG00000204227|ENST00000374656|RING1	ENSG00000121481|ENST00000367510|RNF2	ENSG00000121481|ENST00000367510|RNF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7589721679688	2	522.759081	1043.50361	0.15302	7.9992E-05	0.1163	6.0799E-05	0.26932	0.00014079	522.7591172744933	48.464	0.88425	48.544	48.274	49.159	0.080029					59	30	3	0	0	0	0.22083	1	9779	9779		16.149	6.0752	1	189310			17564	2154	11666	11781	23564	23564					-0.016403045962533724
RPDSFVLIL	9	Unmodified	_RPDSFVLIL_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.3135375976562	2	530.313492	1058.61243	0.22664	0.00012019	0.36945	0.00019592	0.59609	0.00031612	530.3135991574352	73.992	1.1624	73.992	73.661	74.823	0					89	42	3	0	0	0	0.14444	2	17600	17600;17649		24.991	7.8781	1	2169400			17565	2836	11667	11782	23565;23566	23565					0.08546906374067476
RPDSFVLIL	9	Unmodified	_RPDSFVLIL_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.3135375976562	2	530.313492	1058.61243	0.46352	0.00024581	-0.023131	-1.2267E-05	0.44039	0.00023354	530.3133669213204	73.922	1.0285	73.97	73.645	74.673	0.048538					95	37	4	0	0	0	0.091044	2	17417	17417;17460		34.402	5.3201	1	1175300			17566	2836	11667	11782	23567;23568	23567					0.08546906374067476
RPDSLDPAL	9	Unmodified	_RPDSLDPAL_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2609558105469	2	492.261456	982.50836	-0.16247	-7.9975E-05	-0.090976	-4.4784E-05	-0.25344	-0.00012476	492.2612549819613	44.998	0.58482	44.998	44.831	45.416	0					41	20	3	0	0	0	0.21622	1	8802	8802		21.537	2.175	1	147560			17567	3179	11668	11783	23569	23569					0.016405795465175288
RPDSLDPAL	9	Unmodified	_RPDSLDPAL_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2615966796875	2	492.261456	982.50836	0.052822	2.6002E-05	-0.33226	-0.00016356	-0.27944	-0.00013756	492.26128274403055	44.929	0.4958	45.016	44.825	45.321	0.08754					39	18	3	0	0	0	0.26104	1	8652	8652		11.495	1.3441	1	124820			17568	3179	11668	11783	23570	23570					0.016405795465175288
RPDSLDPAL	9	Unmodified	_RPDSLDPAL_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.261456	982.50836	0.052822	2.6002E-05	-0.33226	-0.00016356	-0.27944	-0.00013756	492.26128274403055	44.929	0.4958	45.016	44.825	45.321	0.08754	0.0090902	-0.00012207	NaN	21.537	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124820			17569	3179	11668	11783							0.016405795465175288
RPDTLDPAL	9	Unmodified	_RPDTLDPAL_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6;nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENSG00000100519|ENST00000445930|PSMC6;nc|ENSG00000161057|P35998-2|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.269287109375	2	499.269281	996.52401	-0.035879	-1.7913E-05	0.64373	0.0003214	0.60786	0.00030348	499.26946425075903	45.858	0.91941	45.858	45.53	46.449	0					105	31	4	0	0	0	0.056368	4	9104	9005;9104;9151;9210		41.956	10.687	1	2204300			17570	1205;3791;5792	11669	11784	23571;23572;23573;23574	23572					0.02560866063549838
RPDTLDPAL	9	Unmodified	_RPDTLDPAL_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6;nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENSG00000100519|ENST00000445930|PSMC6;nc|ENSG00000161057|P35998-2|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.26934814453125	2	499.269281	996.52401	0.10372	5.1786E-05	0.61748	0.00030829	0.72121	0.00036008	499.269450219423	45.741	0.95647	45.827	45.525	46.481	0.085621					111	35	4	0	0	0	0.034936	4	8857	8857;8958;9004;9053		47.594	18.513	1	1854100			17571	1205;3791;5792	11669	11784	23575;23576;23577;23578	23575					0.02560866063549838
RPDVHLFNS	9	Unmodified	_RPDVHLFNS_					0	0	0			REV__nc|ENSG00000120802|P42167-2|TMPO	REV__nc|ENSG00000120802|P42167-2|TMPO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7807006835938	2	542.780348	1083.54614	0.6234	0.00033837	0.87359	0.00047416	1.497	0.00081254	542.7807853718501	85.265	0.4747	85.265	84.985	85.459	0					29	16	2	0	0	0	0.14091	2	21045	21045;21062		25.399	6.1423	1	202190	+		17572	8886	11670	11785	23579;23580	23579					0.0077109053199819755
RPDVHLFNS	9	Unmodified	_RPDVHLFNS_					0	0	0			REV__nc|ENSG00000120802|P42167-2|TMPO	REV__nc|ENSG00000120802|P42167-2|TMPO	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.780348	1083.54614	0.74205	0.00040277	-0.091392	-4.9606E-05	0.65066	0.00035316	542.7804476408271	85.238	0.65755	85.261	85.035	85.693	0.023125	-0.0019346	-0.0005081	NaN	25.399	41	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243280	+		17573	8886	11670	11785							0.0077109053199819755
RPEAEEYTE	9	Unmodified	_RPEAEEYTE_					0	0	0		APBA1|p.Q132K|1|0.2|ENSG00000107282|chr9:69516817-69516817|G/T|missense_variant;nc|ENSG00000107282|Q02410-2|APBA1;ENSG00000107282|ENST00000265381|APBA1	APBA1|p.Q132K|1|0.2|ENSG00000107282|chr9:69516817-69516817|G/T|missense_variant	APBA1|p.Q132K|1|0.2|ENSG00000107282|chr9:69516817-69516817|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.826904296875	2	562.248743	1122.48293	0.31799	0.00017879	-1.9047	-0.0010709	-1.5867	-0.00089213	562.2473767439297	46.81	0.25243	46.893	46.711	46.964	0.083096					17	10	2	0	0	0	0.25699	1	9230	9230		3.5965	0.31518	1	50680			17574	40	11671	11786	23581	23581					-0.07340939766572774
RPEDQPWLL	9	Unmodified	_RPEDQPWLL_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7865600585938	2	577.303655	1152.59276	0.36759	0.00021221	-0.50473	-0.00029138	-0.13715	-7.9175E-05	577.303349535531	62.049	0.50053	62.049	61.921	62.421	0					41	19	3	0	0	0	0.2125	1	14004	14004		17.113	4.5813	1	239300			17575	2300	11672	11787	23582	23582					0.02256530363274578
RPEDQPWLL	9	Unmodified	_RPEDQPWLL_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7868041992188	2	577.303655	1152.59276	0.37254	0.00021507	-0.45423	-0.00026223	-0.081691	-4.716E-05	577.3033537601804	61.993	0.47914	62.066	61.917	62.396	0.073421					39	18	3	0	0	0	0.18398	3	13819	13819;13867;13913		20.415	7.883	1	279230			17576	2300	11672	11787	23583;23584;23585	23583					0.02256530363274578
RPEEDAAAL	9	Unmodified	_RPEEDAAAL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2433166503906	2	486.243264	970.471974	-0.33002	-0.00016047	0.16964	8.2484E-05	-0.16039	-7.7986E-05	486.24343552599834	31.247	1.9287	31.247	31.001	32.93	0					201	86	4	0	0	0	0.018465	1	4668	4668		59.368	21.193	1	1866000			17577	4703	11673	11788	23586	23586					-0.014442973502127643
RPEEDAAAL	9	Unmodified	_RPEEDAAAL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2432861328125	2	486.243264	970.471974	-0.28328	-0.00013775	0.21563	0.00010485	-0.067652	-3.2895E-05	486.2434136728925	31.217	1.4883	31.291	31.026	32.514	0.073782					178	72	4	0	0	0	0.026809	3	4527	4527;4572;4614		53.404	20.618	1	1548300			17578	4703	11673	11788	23587;23588;23589	23587					-0.014442973502127643
RPEEDAAALEL	11	Unmodified	_RPEEDAAALEL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.3070068359375	2	607.306592	1212.59863	0.43441	0.00026382	-0.045564	-2.7671E-05	0.38885	0.00023615	607.3064546276066	50.552	0.79798	50.552	50.294	51.092	0					59	27	3	0	0	0	0.17416	1	10447	10447		34.222	8.201	1	628410			17579	4703	11674	11789	23590	23590					0.0008358408429103292
RPEEDAAALEL	11	Unmodified	_RPEEDAAALEL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.3067626953125	2	607.306592	1212.59863	0.64226	0.00039005	-0.30125	-0.00018295	0.34101	0.0002071	607.3063299098754	50.452	0.73304	50.525	50.291	51.024	0.073124					57	26	3	0	0	0	0.29397	1	10349	10349		23.801	3.2201	1	518080			17580	4703	11674	11789	23591	23591					0.0008358408429103292
RPEEDAAALEL	11	Unmodified	_RPEEDAAALEL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	607.306592	1212.59863	0.43441	0.00026382	-0.045564	-2.7671E-05	0.38885	0.00023615	607.3064546276066	50.552	0.79798	50.552	50.294	51.092	0	0.013439	0.00014374	NaN	34.222	59	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628410			17581	4703	11674	11789							0.0008358408429103292
RPEEGKESL	9	Unmodified	_RPEEGKESL_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7694091796875	2	522.769645	1043.52474	0.027013	1.4121E-05	-0.48108	-0.0002515	-0.45407	-0.00023737	522.7693021077623	20.299	0.32376	20.398	20.31	20.633	0.099499					61	35	3	0	0	0	0.28919	1	1479	1479		8.1555	2.8586	1	42844			17582	3659	11675	11790	23592	23592					0.004716607126283634
RPEEGKESL	9	Unmodified	_RPEEGKESL_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	522.769645	1043.52474	-0.31328	-0.00016377	0.012466	6.5171E-06	-0.30082	-0.00015726	522.7695494972281	20.452	0.4229	20.452	20.298	20.72	0	0.026734	0.0002645	NaN	8.1555	69	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39752			17583	3659	11675	11790							0.004716607126283634
RPENSDLY	8	Unmodified	_RPENSDLY_					0	0	0			REV__nc|ENSG00000158023|Q8TBY9-2|CFAP251	REV__nc|ENSG00000158023|Q8TBY9-2|CFAP251	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.78021240234375	2	497.235439	992.456324	0.0042106	2.0937E-06	-2.083	-0.0010357	-2.0788	-0.0010336	497.234491314511	31.226	0.36534	31.3	31.091	31.456	0.073782					26	18	2	0	0	0	0.3576	1	4538	4538		3.9444	0.3479	1	17572	+		17584	9794	11676	11791	23593	23593					-0.040205838672363825
RPEPYSST	8	Unmodified	_RPEPYSST_					0	0	0		ENST00000483039.5_1_17:7461620-7463377:+|nuORF	ENST00000483039.5_1_17:7461620-7463377:+|nuORF	ENST00000483039.5_1_17:7461620-7463377:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.7234191894531	2	468.724707	935.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.839	1	84.862	84.362	85.362	0.023125								0	0	0	0.38822	1	20776	20776		4.3292	0	1				17585	6765	11677	11792	23594	23594					-0.03543968895951366
RPFEDEAL	8	Unmodified	_RPFEDEAL_					0	0	0			REV__ENST00000493592.1_1_7:72954140-72971423:-|nuORF	REV__ENST00000493592.1_1_7:72954140-72971423:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7326354980469	2	488.740357	975.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.322	1	33.322	32.822	33.822	0								0	0	0	0.38652	1	5285	5285		16.942	0	1		+		17586	12165	11678	11793	23595	23595					-0.022553958618573233
RPFEDQTSL	9	Unmodified	_RPFEDQTSL_					0	0	0		RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant;RPF2|p.S161Vfs*20|1|0.22|ENSG00000197498|chr6:111008121-111008121|A/-|frameshift_variant;ENST00000424137.2_1_20:34340744-34341539:+|nuORF;ENSG00000197498|ENST00000441448|RPF2	RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant	RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7701416015625	2	546.769645	1091.52474	-0.57715	-0.00031557	-0.33755	-0.00018456	-0.9147	-0.00050013	546.7693405505926	41.791	0.40685	41.791	41.65	42.057	0					30	13	3	0	0	0	0.26104	1	7872	7872		11.495	0	1	82419			17587	5300	11679	11794	23596	23596					-0.017363392873676275
RPFEDQTSL	9	Unmodified	_RPFEDQTSL_					0	0	0		RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant;RPF2|p.S161Vfs*20|1|0.22|ENSG00000197498|chr6:111008121-111008121|A/-|frameshift_variant;ENST00000424137.2_1_20:34340744-34341539:+|nuORF;ENSG00000197498|ENST00000441448|RPF2	RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant	RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7701416015625	2	546.769645	1091.52474	-0.36425	-0.00019916	-0.22354	-0.00012222	-0.58779	-0.00032138	546.7700892088475	41.743	0.34634	41.832	41.621	41.967	0.089764					20	13	2	0	0	0	0.18398	2	7704	7689;7704		20.415	3.3016	1	80656			17588	5300	11679	11794	23597;23598	23598					-0.017363392873676275
RPFLFLHGLW	10	Unmodified	_RPFLFLHGLW_					0	0	0			REV__nc|ENSG00000178971|Q2NKJ3-2|CTC1	REV__nc|ENSG00000178971|Q2NKJ3-2|CTC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.69140625	2	643.36385	1284.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.1	1	55.1	54.6	55.6	0								0	0	0	0.33979	1	11868	11868		0.45834	0	1		+		17589	10467	11680	11795	23599	23599					0.08217983147551422
RPFNAHLPSG	10	Unmodified	_RPFNAHLPSG_					0	0	0			REV__ENSG00000242732|ENST00000609883|RTL5	REV__ENSG00000242732|ENST00000609883|RTL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7872924804688	2	548.28834	1094.56213	0.39716	0.00021776	-1.4097	-0.00077294	-1.0126	-0.00055519	548.787079695788	52.56	1.0388	52.627	52.291	53.33	0.067169					155	44	5	0	0	0	0.45794	1	10877	10877		3.2813	0.39209	1	1179300	+		17590	11066	11681	11796	23600	23600					0.01862796768887165
RPFQVNLFC	9	Unmodified	_RPFQVNLFC_					0	0	0			REV__ENST00000547799.5_1_12:48112970-48113414:+|nuORF	REV__ENST00000547799.5_1_12:48112970-48113414:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.6785278320312	2	562.289494	1122.56443	0.0012334	6.9351E-07	1.1916	0.00067005	1.1929	0.00067074	562.2900231404261	33.819	0.35326	33.819	33.656	34.009	0					25	12	3	0	0	0	0.25875	1	5399	5399		1.8442	0.51471	1	39380	+		17591	12423	11682	11797	23601	23601					0.00805509182350761
RPGIPMCAQL	10	Unmodified	_RPGIPMCAQL_					0	0	0		ENST00000265087.8_1_5:172755569-172756019:-|nuORF	ENST00000265087.8_1_5:172755569-172756019:-|nuORF	ENST00000265087.8_1_5:172755569-172756019:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2833251953125	2	543.283354	1084.55216	-0.045753	-2.4857E-05	-0.34351	-0.00018662	-0.38926	-0.00021148	543.2830448566251	33.244	0.29834	33.244	33.08	33.378	0					18	11	2	0	0	0	0.46746	1	5264	5264		1.4819	0.68827	1	22807			17592	5896	11683	11798	23602	23602					0.013261494476410007
RPGPPGEPGPF	11	Unmodified	_RPGPPGEPGPF_					0	0	0			REV__ENST00000470339.1_1_X:107683355-107812096:+|nuORF	REV__ENST00000470339.1_1_X:107683355-107812096:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.792236328125	2	554.282723	1106.55089	0.46681	0.00025875	-3.1049	-0.001721	-2.6381	-0.0014622	554.7826467126619	91.494	0.3318	91.529	91.361	91.692	0.035446					16	11	2	0	0	0	0.35043	1	22778	22778		12.241	0.60036	1	59859	+		17593	7827	11684	11799	23603	23603					0.001879746747590616
RPGWAWELRC	10	Unmodified	_RPGWAWELRC_					0	0	0			REV__ENST00000523590.5_3_1:242011560-242012219:+|nuORF	REV__ENST00000523590.5_3_1:242011560-242012219:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.9857788085938	2	637.316574	1272.6186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.236	1	42.325	41.825	42.825	0.089764								0	0	0	0.33988	1	7840	7840		0.35063	0	1		+		17594	12309	11685	11800	23604	23604					-0.0068089866608715965
RPHHAARF	8	Unmodified	_RPHHAARF_					0	0	0			REV__nc|ENSG00000114115|P09455-2|RBP1	REV__nc|ENSG00000114115|P09455-2|RBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7542419433594	2	496.270284	990.526016	0.085533	4.2447E-05	-1.6576	-0.0008226	-1.572	-0.00078015	496.26943005874955	24.104	0.26612	24.204	24.038	24.304	0.099739					36	24	2	0	0	0	0.53858	2	2454	2454;2488		2.3027	2.3027	1	20543	+		17595	8758	11686	11801	23605;23606	23605					0.03037384382696473
RPHHAARF	8	Unmodified	_RPHHAARF_					0	0	0			REV__nc|ENSG00000114115|P09455-2|RBP1	REV__nc|ENSG00000114115|P09455-2|RBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7542419433594	2	496.270284	990.526016	0.085533	4.2447E-05	-1.6576	-0.0008226	-1.572	-0.00078015	496.26943005874955	24.104	0.26612	24.204	24.038	24.304	0.099739					36	24	2	0	0	0	0.3576	1	2454	2454		2.3027	2.3027	1	20543	+		17596	8758	11686	11801	23607	23607					0.03037384382696473
RPHTNETSL	9	Unmodified	_RPHTNETSL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7673950195312	2	527.767437	1053.52032	0.07704	4.0659E-05	-0.40047	-0.00021136	-0.32343	-0.0001707	527.7672852655139	19.991	0.29166	20.087	19.98	20.272	0.095232					68	32	3	0	0	0	0.32614	1	1422	1422		3.2813	0.28607	1	46454			17597	4435	11687	11802	23608	23608					-0.004298037102671515
RPISDFLTL	9	Unmodified	_RPISDFLTL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3038330078125	2	531.303124	1060.5917	0.38951	0.00020695	0.7758	0.00041218	1.1653	0.00061913	531.3034890010467	69.552	0.64644	69.614	69.42	70.066	0.062126					41	24	3	0	0	0	0.081383	1	16116	16116		36.506	0	1	355460			17598	4320	11688	11803	23609	23609					0.06382315994369492
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2873229980469	2	499.287474	996.560395	-0.16604	-8.2903E-05	0.015336	7.657E-06	-0.15071	-7.5246E-05	499.28737458961234	45.457	0.63135	45.457	45.151	45.782	0					49	21	3	0	0	0	0.16392	1	8969	8969		22.736	1.1993	1	437550			17599	526	11689	11804	23610	23610					0.061977429602734446
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.28753662109375	2	499.287474	996.560395	0.088225	4.4049E-05	0.079747	3.9817E-05	0.16797	8.3866E-05	499.2874344634847	45.363	0.6056	45.451	45.148	45.754	0.08754					52	22	3	0	0	0	0.07372	2	8749	8749;8839		38.176	3.7738	1	361180			17600	526	11689	11804	23611;23612	23611					0.061977429602734446
RPKWKRVLP	9	Unmodified	_RPKWKRVLP_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.759765625	2	590.377292	1178.74003	0.26623	0.00015718	-0.72345	-0.00042711	-0.45722	-0.00026993	590.376707958346	51.819	0.30215	51.819	51.713	52.015	0					13	10	2	0	0	0	0.25989	1	10920	10920		0.52476	0.52476	1	56567			17601	4729	11690	11805	23613	23613					0.15781091758753973
RPLDVDWTL	9	Unmodified	_RPLDVDWTL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7982788085938	2	557.798206	1113.58186	0.65644	0.00036616	-0.0089855	-5.0121E-06	0.64746	0.00036115	557.7980672041992	67.341	0.73709	67.341	67.011	67.748	0					64	27	3	0	0	0	0.1646	1	15578	15578		22.658	9.6156	1	350570			17602	4202	11691	11806	23614	23614					0.029611279890104925
RPLDVDWTL	9	Unmodified	_RPLDVDWTL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7821655273438	2	557.798206	1113.58186	0.9251	0.00051602	-0.14238	-7.942E-05	0.78271	0.0004366	557.7983064876249	67.301	1.0363	67.366	66.839	67.876	0.065071					67	35	3	0	0	0	0.11198	1	15404	15404		29.841	7.1043	1	416840			17603	4202	11691	11806	23615	23615					0.029611279890104925
RPLEDLTF	8	Unmodified	_RPLEDLTF_					0	0	0			REV__ENSG00000237700|ENST00000437300|PRAMEF33	REV__ENSG00000237700|ENST00000437300|PRAMEF33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7658386230469	2	495.766374	989.518196	-0.055512	-2.7521E-05	-0.35325	-0.00017513	-0.40876	-0.00020265	495.7660707759514	44.842	0.49375	44.842	44.632	45.126	0					41	17	4	0	0	0	0.54097	1	8820	8820		0.69038	0	1	229650	+		17604	10736	11692	11807	23616	23616					0.023017675518985925
RPLEGLLLQ	9	Unmodified	_RPLEGLLLQ_					0	0	0		ENST00000554944.5_1_9:34646701-34647660:+|nuORF	ENST00000554944.5_1_9:34646701-34647660:+|nuORF	ENST00000554944.5_1_9:34646701-34647660:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.8182373046875	2	519.818941	1037.62333	0.33562	0.00017446	-1.2202	-0.0006343	-0.8846	-0.00045983	519.8181221175657	88.351	0.4288	88.381	88.167	88.596	0.030045					44	16	3	0	0	0	0.25979	1	21871	21871		11.64	0	1	847790			17605	7119	11693	11808	23617	23617					0.10602308748320866
RPLEGLLLQ	9	Unmodified	_RPLEGLLLQ_					0	0	0		ENST00000554944.5_1_9:34646701-34647660:+|nuORF	ENST00000554944.5_1_9:34646701-34647660:+|nuORF	ENST00000554944.5_1_9:34646701-34647660:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	519.818941	1037.62333	0.44287	0.00023021	-1.5624	-0.00081216	-1.1195	-0.00058194	519.8180600905525	88.45	0.46716	88.45	88.181	88.648	0	0.034559	-9.2248E-05	NaN	11.64	46	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	925130			17606	7119	11693	11808							0.10602308748320866
RPLKRLIPKI	10	Unmodified	_RPLKRLIPKI_					0	0	0			REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF	REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.4122314453125	2	617.429525	1232.8445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.27	1	111.27	110.77	111.77	0								0	0	0	0.33984	1	28505	28505		0.40072	0	1		+		17607	8606	11694	11809	23618	23618					0.23738793515440193
RPNSIDPAL	9	Unmodified	_RPNSIDPAL_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.76947021484375	2	491.769448	981.524344	-0.22896	-0.00011259	0.35649	0.00017531	0.12753	6.2714E-05	491.7696026563917	40.464	0.52749	40.464	40.208	40.736	0					58	18	4	0	0	0	0.034936	3	7448	7402;7448;7497		47.594	19.966	1	827790			17608	4073	11695	11810	23619;23620;23621	23620					0.032842857833998096
RPNSIDPAL	9	Unmodified	_RPNSIDPAL_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.76953125	2	491.769448	981.524344	-0.10929	-5.3743E-05	0.31847	0.00015661	0.20919	0.00010287	491.76957987291007	40.384	0.52797	40.473	40.215	40.743	0.089642					51	19	3	0	0	0	0.064247	2	7290	7250;7290		40.239	12.61	1	626090			17609	4073	11695	11810	23622;23623	23623					0.032842857833998096
RPPLNTLVPSS	11	Unmodified	_RPPLNTLVPSS_					0	0	0			REV__ENST00000359523.6_1_1:167759427-167759691:+|nuORF	REV__ENST00000359523.6_1_1:167759427-167759691:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.814697265625	2	590.837862	1179.66117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.212	1	18.302	17.802	18.802	0.089705								0	0	0	0.33908	1	1007	1007		1.0715	0	1		+		17610	11531	11696	11811	23624	23624					0.07852774943148688
RPPPGARG	8	Unmodified	_RPPPGARG_					0	0	0		KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2330322265625	2	404.232836	806.45112	0.4069	0.00016448	0.26659	0.00010776	0.67349	0.00027225	404.23287165774656	80.213	1.4907	80.237	79.645	81.136	0.023605					125	52	4	0	0	0	0.54097	1	19618	19618		0.69038	0	1	3327200			17611	7377	11697	11812	23625	23625					0.040152018514731935
RPPPTRRR	8	Unmodified	_RPPPTRRR_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.3173828125	2	518.317766	1034.62098	0.48645	0.00025214	-1.033	-0.00053541	-0.54652	-0.00028327	518.3170996528951	81.531	1.2474	81.553	80.999	82.246	0.021866					84	44	3	0	0	0	0.54097	1	19790	19790		0.69038	0	1	650370			17612	7338	11698	11813	23626	23626					0.10505317853881024
RPPPTRRR	8	Unmodified	_RPPPTRRR_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	518.317766	1034.62098	0.75323	0.00039041	-1.5824	-0.00082019	-0.82918	-0.00042978	518.3169080107099	81.729	1.3187	81.729	81.404	82.723	0	0.088027	-0.00024175	NaN	0.69038	78	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295940			17613	7338	11698	11813							0.10505317853881024
RPPYPYPC	8	Unmodified	_RPPYPYPC_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.23724365234375	2	496.736563	991.458573	0.13955	6.9318E-05	-1.3591	-0.00067512	-1.2196	-0.0006058	496.73575401886893	22.051	0.22342	22.152	22.051	22.275	0.10178					25	19	2	0	0	0	0.54081	1	1914	1914		0.79363	0.10326	1	12267	+		17614	11484	11699	11814	23627	23627					-0.03749826663135991
RPPYPYPC	8	Unmodified	_RPPYPYPC_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	496.736563	991.458573	-0.15578	-7.738E-05	-1.2944	-0.00064297	-1.4502	-0.00072035	496.7357951030159	22.21	0.21381	22.21	22.124	22.337	0	0.028713	3.2116E-05	NaN	0.79363	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11728	+		17615	11484	11699	11814							-0.03749826663135991
RPPYPYPC	8	Unmodified	_RPPYPYPC_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	496.736563	991.458573	0.13955	6.9318E-05	-1.3591	-0.00067512	-1.2196	-0.0006058	496.73575401886893	22.051	0.22342	22.152	22.051	22.275	0.10178	-0.028713	-3.2173E-05	NaN	0.79363	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12267	+		17616	11484	11699	11814							-0.03749826663135991
RPQTQPPSGS	10	Unmodified	_RPQTQPPSGS_					0	0	0		ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7670288085938	2	527.767437	1053.52032	-0.32542	-0.00017175	-0.1943	-0.00010255	-0.51973	-0.00027429	527.7673547373071	20.107	0.3873	20.107	19.973	20.36	0					70	37	3	0	0	0	0.44496	1	1508	1508		5.7319	0.43497	1	51385			17617	3610	11700	11815	23628	23628					-0.004298037102898888
RPQTQPPSGS	10	Unmodified	_RPQTQPPSGS_					0	0	0		ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7667846679688	2	527.767437	1053.52032	0.07704	4.0659E-05	-0.40047	-0.00021136	-0.32343	-0.0001707	527.7672852655139	19.991	0.29166	20.087	19.98	20.272	0.095232					68	32	3	0	0	0	0.44496	1	1388	1388		5.7319	0.43497	1	46454			17618	3610	11700	11815	23629	23629					-0.004298037102898888
RPQTQPPSGS	10	Unmodified	_RPQTQPPSGS_					0	0	0		ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.767437	1053.52032	-0.32542	-0.00017175	-0.1943	-0.00010255	-0.51973	-0.00027429	527.7673547373071	20.107	0.3873	20.107	19.973	20.36	0	0.0099524	0.00011572	NaN	5.7319	70	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51385			17619	3610	11700	11815							-0.004298037102898888
RPRGVSLTNHH	11	Unmodified	_RPRGVSLTNHH_					0	0	0		nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.2342224121094	3	425.233927	1272.67995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.47	1	103.47	102.97	103.97	0								0	0	0	0.33835	1	26599	26599		0.45452	0.1855	1				17620	2456	11701	11816	23630	23630					0.05451749357553126
RPRHRRKRH	9	Unmodified	_RPRHRRKRH_					0	0	0			REV__NCEH1-CCDC50|1|fusion	REV__NCEH1-CCDC50|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.6011047363281	3	433.601167	1297.78167	0.63715	0.00027627	-0.99909	-0.00043321	-0.36194	-0.00015694	433.6006676718276	97.009	0.6936	97.009	96.745	97.438	0					67	33	3	0	0	0	0.34923	1	24696	24696		0.23584	0.076522	1	192540	+		17621	9674	11702	11817	23631	23631					0.14469085290625117
RPRLDAYT	8	Unmodified	_RPRLDAYT_					0	0	0			REV__ENST00000490239.5_1_9:35618108-35618324:-|nuORF	REV__ENST00000490239.5_1_9:35618108-35618324:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.71075439453125	2	496.269616	990.524678	-0.096641	-4.796E-05	-0.59379	-0.00029468	-0.69044	-0.00034264	496.26922937259513	24.295	0.29062	24.295	24.158	24.448	0					39	26	2	0	0	0	0.3576	1	2668	2668		2.0598	0	1	17875	+		17622	12143	11703	11818	23632	23632					0.029037055032631542
RPRRFYQML	9	Unmodified	_RPRRFYQML_					0	0	0		ENST00000423894.5_1_3:28283112-28361002:+|nuORF	ENST00000423894.5_1_3:28283112-28361002:+|nuORF	ENST00000423894.5_1_3:28283112-28361002:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.9015808105469	3	422.90112	1265.68153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.58	1	107.6	107.1	108.1	0.022224								0	0	0	0.29005	1	27562	27562		1.0715	0.29493	1				17623	6460	11704	11819	23633	23633					0.059316671219448835
RPSKDYLL	8	Unmodified	_RPSKDYLL_					0	0	0		nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF	nc|ENSG00000128585|Q9UL63-2|MKLN1	nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2820129394531	2	496.282192	990.549831	0.041114	2.0404E-05	0.20576	0.00010211	0.24687	0.00012252	496.2820507412388	33.023	0.62324	33.023	32.781	33.404	0					37	24	2	0	0	0	0.52902	1	5191	5191		8.7454	3.9894	1	44209			17624	2401	11705	11820	23634	23634					0.054177603058633395
RPSPRSGEKR	10	Unmodified	_RPSPRSGEKR_					0	0	0			REV__ENST00000504148.2_1_11:111955888-111956080:-|nuORF	REV__ENST00000504148.2_1_11:111955888-111956080:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.328369140625	2	585.328528	1168.6425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.58	1	109.58	109.08	110.08	0								0	0	0	0.33738	1	28196	28196		3.2813	0.54611	1		+		17625	12211	11706	11821	23635	23635					0.06492658091951853
RPTPQDYEM	9	Unmodified	_RPTPQDYEM_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7557983398438	2	568.755681	1135.49681	0.14824	8.431E-05	-0.57623	-0.00032773	-0.42799	-0.00024342	568.7553472251781	36.428	0.46192	36.428	36.259	36.721	0					29	17	2	0	0	0	0.31086	3	6228	6211;6228;6275		5.2969	2.0156	1	41207			17626	133	11707	11822	23636;23637;23638	23637					-0.06551985539135785
RPTPQDYEM	9	Unmodified	_RPTPQDYEM_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7556762695312	2	568.755681	1135.49681	0.18078	0.00010282	-0.31307	-0.00017806	-0.1323	-7.5245E-05	568.7551982290429	36.396	0.45528	36.478	36.235	36.691	0.081711					26	18	2	0	0	0	0.31086	1	6073	6073		5.2969	0.76802	1	36903			17627	133	11707	11822	23639	23639					-0.06551985539135785
RPTSVDPAL	9	Unmodified	_RPTSVDPAL_					0	0	0		ENST00000599253.1_1_19:48248882-48249496:+|nuORF;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53	ENST00000599253.1_1_19:48248882-48249496:+|nuORF	ENST00000599253.1_1_19:48248882-48249496:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.263916015625	2	478.263999	954.513445	-0.035657	-1.7053E-05	-0.088493	-4.2323E-05	-0.12415	-5.9377E-05	478.26387287932926	36.842	1.3223	36.842	36.46	37.783	0					128	49	4	0	0	0	0.056368	2	6342	6342;6381		41.956	9.1699	1	954980			17628	1464	11708	11823	23640;23641	23640					0.03436883409131042
RPTSVDPAL	9	Unmodified	_RPTSVDPAL_					0	0	0		ENST00000599253.1_1_19:48248882-48249496:+|nuORF;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53	ENST00000599253.1_1_19:48248882-48249496:+|nuORF	ENST00000599253.1_1_19:48248882-48249496:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2639465332031	2	478.263999	954.513445	-0.031019	-1.4835E-05	-0.005684	-2.7184E-06	-0.036703	-1.7554E-05	478.26391198906333	36.756	1.4119	36.838	36.455	37.867	0.081715					129	53	4	0	0	0	0.07372	2	6189	6189;6233		38.176	5.3899	1	764740			17629	1464	11708	11823	23642;23643	23642					0.03436883409131042
RPVAELAEQV	10	Unmodified	_RPVAELAEQV_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3080444335938	2	556.308938	1110.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.639	1	84.663	84.163	85.163	0.023125								0	0	0	0.32902	1	20714	20714		13.042	0.80181	1		+		17630	11060	11709	11824	23644	23644					0.05244513017692043
RPVELSDRETL	11	Unmodified	_RPVELSDRETL_					0	0	0		nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4	nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.9050598144531	3	438.905253	1313.69393	0.42341	0.00018584	-0.79785	-0.00035018	-0.37443	-0.00016434	438.90492847330887	37.505	0.44294	37.505	37.315	37.758	0					24	15	3	0	0	0	0.40316	1	6540	6540		3.5927	2.5791	1	46996			17631	1907	11710	11825	23645	23645					0.04962937275331569
RPVELSDRETL	11	Unmodified	_RPVELSDRETL_					0	0	0		nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4	nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.9048156738281	3	438.905253	1313.69393	0.15919	6.9871E-05	-0.31908	-0.00014005	-0.15988	-7.0174E-05	438.90516302308083	37.374	0.47283	37.459	37.271	37.744	0.084476					25	16	2	0	0	0	0.41169	1	6368	6368		1.6479	0.055605	1	39750			17632	1907	11710	11825	23646	23646					0.04962937275331569
RPVGALRF	8	Unmodified	_RPVGALRF_					0	0	0			REV__ENST00000395348.7_1_10:61444064-61469743:-|nuORF	REV__ENST00000395348.7_1_10:61444064-61469743:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.5393371582031	2	458.279786	914.54502	-0.43555	-0.0001996	-2.9183	-0.0013374	-3.3539	-0.001537	458.27822868734586	41.578	0.20224	41.578	41.407	41.609	0					11	7	2	0	0	0	0.3576	1	7753	7753		2.5775	0	1	24206	+		17633	11717	11711	11826	23647	23647					0.08432920953748635
RPVKSILNNKN	11	Unmodified	_RPVKSILNNKN_					0	0	0			REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8825073242188	2	641.883136	1281.75172	-0.022172	-1.4232E-05	-0.73385	-0.00047105	-0.75602	-0.00048528	641.882595686063	90.087	0.59709	90.121	89.906	90.503	0.034065					41	24	2	0	0	0	0.39569	1	22400	22400		5.2969	0.39987	1	744590	+		17634	12791	11712	11827	23648	23648					0.12211243991418996
RPVSVWDVL	9	Unmodified	_RPVSVWDVL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.8033447265625	2	535.803291	1069.59203	0.46756	0.00025052	-0.33605	-0.00018006	0.13151	7.0465E-05	535.8030820009755	71.31	0.66882	71.31	71.001	71.669	0					80	22	5	0	0	0	0.0046221	4	16824	16775;16824;16869;16878		86.332	26.258	1	4750200			17635	5715	11713	11828	23649;23650;23651;23652	23650					0.06001735714221468
RPVSVWDVL	9	Unmodified	_RPVSVWDVL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	535.803291	1069.59203	0.6781	0.00036333	-0.54421	-0.00029159	0.13389	7.1737E-05	535.8029457779836	71.255	0.59972	71.313	71.026	71.626	0.058586	0.0014463	-9.8582E-05	NaN	86.332	77	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4941000			17636	5715	11713	11828							0.06001735714221468
RPVTRASI	8	Unmodified	_RPVTRASI_					0	0	0			REV__ENST00000433473.7_1_1:40539414-40539546:-|nuORF	REV__ENST00000433473.7_1_1:40539414-40539546:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2756042480469	2	450.274701	898.534849	0.64	0.00028818	-0.51997	-0.00023413	0.12003	5.4047E-05	450.27437897310676	87.927	1.0788	87.927	87.664	88.743	0					105	41	4	0	0	0	0.5411	1	22063	22063		0.6015	0	1	3244100	+		17637	11857	11714	11829	23653	23653					0.08152313228504227
RPVVKVKL	8	Unmodified	_RPVVKVKL_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.8302001953125	2	469.829112	937.643671	0.45186	0.0002123	2.3965	0.0011259	2.8483	0.0013382	469.8300604044524	97.787	0.59879	97.787	97.461	98.06	0					41	29	2	0	0	0	0.54097	1	24889	24889		0.69038	0	1	50964			17638	911	11715	11830	23654	23654					0.17235524198792973
RPWPRGCSW	9	Unmodified	_RPWPRGCSW_					0	0	0		ENST00000400301.5_2_1:22084220-22109545:-|nuORF	ENST00000400301.5_2_1:22084220-22109545:-|nuORF	ENST00000400301.5_2_1:22084220-22109545:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3662719726562	2	572.777085	1143.53962	0.38126	0.00021838	-4.0087	-0.0022961	-3.6274	-0.0020777	572.7746062664684	53.705	0.40805	53.705	53.49	53.898	0					19	14	2	0	0	0	0.24791	1	11469	11469		10.074	0.6908	1	100280			17639	6365	11716	11831	23655	23655					-0.026411259003680243
RPWPRRQE	8	Unmodified	_RPWPRRQE_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8070068359375	2	562.807231	1123.59991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.74	1	15.74	15.24	16.24	0								0	0	0	0.38822	1	602	602		0.6015	0	1		+		17640	8203	11717	11832	23656	23656					0.0430530775436182
RPYDAEVSL	9	Unmodified	_RPYDAEVSL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.267578125	2	525.266739	1048.51892	-0.060373	-3.1712E-05	0.76895	0.00040391	0.70858	0.00037219	525.2671888348845	45.981	0.61145	45.981	45.808	46.42	0					44	20	3	0	0	0	0.12214	1	9090	9090		27.629	4.8925	1	290660			17641	568	11718	11833	23657	23657					-0.00339437799038933
RPYDAEVSL	9	Unmodified	_RPYDAEVSL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2676391601562	2	525.266739	1048.51892	-0.048032	-2.523E-05	0.41827	0.00021971	0.37024	0.00019448	525.2669709171769	45.943	0.46404	46.028	45.811	46.275	0.085621					40	17	3	0	0	0	0.12214	3	8931	8931;8966;8972		27.629	7.8781	1	237840			17642	568	11718	11833	23658;23659;23660	23658					-0.00339437799038933
RQAAGPRL	8	Unmodified	_RQAAGPRL_					0	0	0		nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-3|ELP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88226318359375	2	434.759218	867.503883	0.83998	0.00036519	-0.86475	-0.00037596	-0.024763	-1.0766E-05	434.75885460104195	79.823	0.48777	79.823	79.682	80.169	0					26	16	2	0	0	0	0.3576	1	19379	19379		0.69038	0	1	113080			17643	7483	11719	11834	23661	23661					0.0648315991426216
RQAAGPRL	8	Unmodified	_RQAAGPRL_					0	0	0		nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-3|ELP4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	434.759218	867.503883	0.28085	0.0001221	-0.08973	-3.9011E-05	0.19112	8.3093E-05	434.7590164006827	79.826	0.53822	79.852	79.622	80.16	0.026436	0.014841	0.00038855	NaN	0.69038	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67600			17644	7483	11719	11834							0.0648315991426216
RQAAWTSQW	9	Unmodified	_RQAAWTSQW_					0	0	0		ENST00000376572.7_1_1:11982976-11983018:-|nuORF	ENST00000376572.7_1_1:11982976-11983018:-|nuORF	ENST00000376572.7_1_1:11982976-11983018:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7662963867188	2	567.277972	1132.54139	0.34065	0.00019324	1.1765	0.00066742	1.5172	0.00086067	567.2786489619616	81.959	1.3079	81.981	81.196	82.504	0.021866					64	47	2	0	0	0	0.15282	1	20024	20024		24.021	0.87215	1	111090			17645	6246	11720	11835	23662	23662					-0.01957793610790759
RQAEELLEWE	10	Unmodified	_RQAEELLEWE_					0	0	0			REV__ENSG00000131845|ENST00000282286|ZNF304	REV__ENSG00000131845|ENST00000282286|ZNF304	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88226318359375	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.726	1	79.726	79.226	80.226	0								0	0	0	0.33711	1	19379	19379		3.5871	1.5011	1		+		17646	9098	11721	11836	23663	23663					-0.013567270243584062
RQAHLIELL	9	Unmodified	_RQAHLIELL_					0	0	0		ENST00000583043.5_1_18:67684852-67806940:-|nuORF;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN	ENST00000583043.5_1_18:67684852-67806940:-|nuORF	ENST00000583043.5_1_18:67684852-67806940:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2512817382812	2	546.82984	1091.64513	0.58719	0.00032109	1.3796	0.00075443	1.9668	0.0010755	546.8302309228484	98.41	0.55263	98.41	98.045	98.597	0					31	29	2	0	0	0	0.25504	1	24960	24960		4.756	0	1	82109			17647	4654	11722	11837	23664	23664					0.10297113496881138
RQAKRTTCDMV	11	Unmodified	_RQAKRTTCDMV_					0	0	0		ENST00000453213.1_1_9:132260664-132265690:+|nuORF	ENST00000453213.1_1_9:132260664-132265690:+|nuORF	ENST00000453213.1_1_9:132260664-132265690:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.87896728515625	3	436.888551	1307.64382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.557	1	26.557	26.057	27.057	0								0	0	0	0.34185	1	3294	3294		0.094841	0	1				17648	6576	11723	11838	23665	23665					0.002307880741682311
RQAWLALSW	9	Unmodified	_RQAWLALSW_					0	0	0			REV__ENST00000478328.1_1_7:127231492-127231768:+|nuORF	REV__ENST00000478328.1_1_7:127231492-127231768:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.297607421875	2	565.808908	1129.60326	0.30491	0.00017252	-1.2263	-0.00069384	-0.92137	-0.00052132	565.8080562479538	82.109	1.0198	82.131	81.57	82.59	0.021866					61	36	2	0	0	0	0.25209	1	19882	19882		12.532	3.1484	1	135530	+		17649	12064	11724	11839	23666	23666					0.04364557808344216
RQDFAHCTDF	10	Unmodified	_RQDFAHCTDF_					0	0	0			REV__ENST00000502631.1_1_5:115141132-115145367:-|nuORF	REV__ENST00000502631.1_1_5:115141132-115145367:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.2664794921875	2	620.264204	1238.51386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.033	1	74.081	73.581	74.581	0.048546								0	0	0	0.32971	1	17483	17483		12.241	2.1667	1		+		17650	9039	11725	11840	23667	23667					-0.09586064933318994
RQELEQAL	8	Unmodified	_RQELEQAL_					0	0	0		nc|ENSG00000066117|Q96GM5-2|SMARCD1;ENSG00000066117|ENST00000394963|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.766845703125	2	493.766906	985.519259	-0.32676	-0.00016134	-0.41027	-0.00020258	-0.73703	-0.00036392	493.76669564393796	41.699	0.42014	41.788	41.573	41.994	0.089767					33	16	3	0	0	0	0.41225	1	7669	7669		24.674	0	1	117270			17651	695	11726	11841	23668	23668					0.025919819208070294
RQETFVYEM	9	Unmodified	_RQETFVYEM_					0	0	0		ENSG00000164975|ENST00000380821|SNAPC3;ENST00000461041.1_1_9:15423144-15433670:+|nuORF	ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7786254882812	2	601.779156	1201.54376	0.19206	0.00011558	0.10238	6.1612E-05	0.29444	0.00017719	601.7791812769971	45.692	0.9509	45.778	45.475	46.426	0.085621					62	35	2	0	0	0	0.33978	1	9036	9036		1.4819	0.68827	1	97054			17652	4048	11727	11842	23669	23669					-0.048951259879686404
RQEVELPS	8	Unmodified	_RQEVELPS_					0	0	0		DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant;ENSG00000145214|ENST00000273814|DGKQ	DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2525939941406	2	479.253631	956.49271	0.038851	1.862E-05	-0.26957	-0.00012919	-0.23072	-0.00011057	479.2533804037617	37.616	0.74494	37.701	37.42	38.165	0.084476					41	25	2	0	0	0	0.53614	1	6510	6510		3.9444	0	1	103090			17653	275	11728	11843	23670	23670					0.012722930294785328
RQEVRRVF	8	Unmodified	_RQEVRRVF_					0	0	0			REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF;REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3169555664062	2	545.317432	1088.62031	0.4162	0.00022696	-1.0145	-0.00055323	-0.59831	-0.00032627	545.3167214442848	87.63	0.82199	87.63	87.291	88.113	0					82	29	4	0	0	0	0.53026	1	21798	21798		7.9102	0	1	527030	+		17654	12825;8021	11729	11844	23671	23671					0.07954478414194455
RQEYLKLEM	9	Unmodified	_RQEYLKLEM_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.31787109375	2	605.318448	1208.62234	0.091928	5.5646E-05	-0.61093	-0.00036981	-0.519	-0.00031416	605.3180937065082	44.604	0.81847	44.604	44.387	45.205	0					67	29	4	0	0	0	0.23216	1	8705	8705		14.838	0	1	300850			17655	2156	11730	11845	23672	23672					0.02637726317107081
RQEYLKLEM	9	Unmodified	_RQEYLKLEM_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.31787109375	2	605.318448	1208.62234	0.37357	0.00022613	-0.78405	-0.0004746	-0.41047	-0.00024847	605.3179425580761	44.533	0.69899	44.621	44.334	45.033	0.087543					57	25	3	0	0	0	0.23216	1	8551	8551		14.838	0	1	254170			17656	2156	11730	11845	23673	23673					0.02637726317107081
RQGLHLGG	8	Unmodified	_RQGLHLGG_					0	0	0		HSD3B7|p.R211H|1|0.44|ENSG00000099377|chr16:30986940-30986940|G/A|missense_variant	HSD3B7|p.R211H|1|0.44|ENSG00000099377|chr16:30986940-30986940|G/A|missense_variant	HSD3B7|p.R211H|1|0.44|ENSG00000099377|chr16:30986940-30986940|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.31549072265625	2	419.238119	836.461684	0.10682	4.4783E-05	1.1975	0.00050203	1.3043	0.00054681	419.23978780564323	51.168	0.10834	51.238	51.154	51.262	0.069874					5	3	2	0	0	0	0.3576	1	10518	10518		0.79363	0	1	13663			17657	7356	11731	11846	23674	23674					0.036911845059080406
RQHILLVSK	9	Unmodified	_RQHILLVSK_					0	0	0			REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7	REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.332763671875	2	547.345658	1092.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.01	1	115.01	114.51	115.51	0								0	0	0	0.2927	1	29350	29350		0.52476	0	1		+		17658	12787	11732	11847	23675	23675					0.13413106250868623
RQHKFVQF	8	Unmodified	_RQHKFVQF_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7879028320312	2	545.30125	1088.58795	0.2061	0.00011239	-1.4949	-0.00081518	-1.2888	-0.00070279	545.3005583796875	56.823	0.32553	56.823	56.702	57.028	0					21	11	3	0	0	0	0.45077	1	12409	12409		19.439	0	1	142160	+		17659	9436	11733	11848	23676	23676					0.04719691011177929
RQHMQERR	8	Unmodified	_RQHMQERR_					0	0	0		nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	nc|ENSG00000114859|P51788-4|CLCN2	nc|ENSG00000114859|P51788-4|CLCN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.793701171875	2	570.793798	1139.57304	-0.012748	-7.2763E-06	0.19514	0.00011138	0.18239	0.00010411	570.7938533067639	33.587	0.75891	33.661	33.327	34.086	0.074322					48	31	2	0	0	0	0.54097	1	5237	5237		0.69038	0	1	23304			17660	1861	11734	11849	23677	23677					0.008838758715455697
RQIFLFVFF	9	Unmodified	_RQIFLFVFF_					0	0	0		ENST00000318348.8_1_12:110289098-110289272:-|nuORF	ENST00000318348.8_1_12:110289098-110289272:-|nuORF	ENST00000318348.8_1_12:110289098-110289272:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5435791015625	3	406.234093	1215.68045	0.53583	0.00021767	-4.2174	-0.0017133	-3.6816	-0.0014956	406.23254096797126	38.447	0.49104	38.447	38.076	38.567	0					19	16	2	0	0	0	0.25952	1	6772	6772		1.1933	0	1	22225			17661	6023	11735	11850	23678	23678					0.08123776024694962
RQIQEFLN	8	Unmodified	_RQIQEFLN_					0	0	0			REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.282470703125	2	524.282723	1046.55089	-0.18035	-9.4554E-05	-0.069104	-3.623E-05	-0.24945	-0.00013078	524.282576943692	27.227	0.46266	27.227	27.016	27.479	0					87	30	4	0	0	0	0.53118	1	3497	3497		7.2892	0	1	234560	+		17662	12477	11736	11851	23679	23679					0.02947974674748366
RQKERDLEAL	10	Unmodified	_RQKERDLEAL_					0	0	0		ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3489990234375	2	629.349126	1256.6837	0.14802	9.3157E-05	0.033999	2.1397E-05	0.18202	0.00011455	629.3491868925952	19.248	0.6881	19.343	19.158	19.846	0.095232					219	78	4	0	0	0	0.47318	1	1310	1310		0.40072	0	1	448190			17663	5661	11737	11852	23680	23680					0.06562374340774113
RQKGNRNTHK	10	Unmodified	_RQKGNRNTHK_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.820068359375	2	619.844876	1237.6752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.33	1	93.367	92.867	93.867	0.037369								0	0	0	0.33905	1	23357	23357		1.3295	0.13619	1				17664	4320	11738	11853	23681	23681					0.06586865214785576
RQKQWRSRL	9	Unmodified	_RQKQWRSRL_					0	0	0			REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF	REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3658447265625	2	629.367987	1256.72142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.142	1	16.22	15.72	16.72	0.077806								0	0	0	0.2927	1	613	613		0.52476	0	1		+		17665	11286	11739	11854	23682	23682					0.10332930116896932
RQKQWRSRL	9	Unmodified	_RQKQWRSRL_					0	0	0			REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF	REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3656616210938	2	629.367987	1256.72142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.097	1	17.181	16.681	17.681	0.083696								0	0	0	0.2927	1	786	786		0.52476	0	1		+		17666	11286	11739	11854	23683	23683					0.10332930116896932
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.646728515625	3	483.646776	1447.9185	-0.30236	-0.00014624	0.19746	9.5501E-05	-0.1049	-5.0737E-05	483.64678187340246	43.318	0.62201	43.407	43.092	43.714	0.089764					44	22	3	0	0	0	0.4753	1	8168	8168		0	0	1	70512	+		17667	8594	11740	11855	23684	23684					0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.64678955078125	3	483.646776	1447.9185	-0.23291	-0.00011264	-0.26062	-0.00012605	-0.49352	-0.00023869	483.64665017357345	44.841	0.68945	44.928	44.595	45.285	0.08754					44	25	2	0	0	0	0.4753	1	8604	8604		0	0	1	55803	+		17668	8594	11740	11855	23685	23685					0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2498474121094	3	483.646776	1447.9185	-0.23291	-0.00011264	-0.26062	-0.00012605	-0.49352	-0.00023869	483.64665017357345	44.841	0.68945	44.928	44.595	45.285	0.08754					44	25	2	0	0	0	0.31857	1	8554	8554		0	0	1	55803	+		17669	8594	11740	11855	23686	23686					0.21245574450313143
RQLLQRGF	8	Unmodified	_RQLLQRGF_					0	0	0		ENST00000605055.5_1_12:51777293-51785409:-|nuORF;ENST00000605367.5_1_12:51777307-51785172:-|nuORF;ENST00000603563.5_1_12:51777293-51785070:-|nuORF	ENST00000605055.5_1_12:51777293-51785409:-|nuORF	ENST00000605055.5_1_12:51777293-51785409:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.25762939453125	2	509.30125	1016.58795	0.23921	0.00012183	-1.7712	-0.00090205	-1.5319	-0.00078022	509.3004092169478	48.185	0.40792	48.185	48.045	48.453	0					18	13	2	0	0	0	0.3576	1	9730	9730		2.8892	0	1	94816			17670	7302	11741	11856	23687	23687					0.08031691011183284
RQLRCLTL	8	Unmodified	_RQLRCLTL_					0	0	0			REV__ENST00000436066.3_1_19:30165768-30165876:+|nuORF	REV__ENST00000436066.3_1_19:30165768-30165876:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.79766845703125	2	501.797486	1001.58042	0.33722	0.00016921	-0.30188	-0.00015148	0.03534	1.7733E-05	501.7973178491257	94.295	0.35557	94.333	94.144	94.5	0.038086					24	13	2	0	0	0	0.51415	1	23654	23654		10.824	0	1	125590	+		17671	11863	11742	11857	23688	23688					0.07969215419234388
RQLRVQFGQRR	11	Unmodified	_RQLRVQFGQRR_					0	0	0		ENST00000606915.1_1_6:150184898-150185078:+|nuORF	ENST00000606915.1_1_6:150184898-150185078:+|nuORF	ENST00000606915.1_1_6:150184898-150185078:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.28375244140625	3	481.951642	1442.8331	0.28821	0.0001389	0.99335	0.00047875	1.2816	0.00061765	481.95207345053626	97.28	1.0316	97.321	97.017	98.049	0.040855					78	51	2	0	0	0	0.31097	1	24475	24475		1.3296	0.11481	1	146730			17672	7312	11743	11858	23689	23689					0.12939364474004833
RQMKQMHWK	9	Unmodified	_RQMKQMHWK_					0	0	0			REV__ENST00000468376.2_1_20:45867286-45947776:-|nuORF	REV__ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.8256225585938	2	636.826252	1271.63795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.44	1	40.529	40.029	41.029	0.089645								0	0	0	0.2927	1	7298	7298		0.52476	0	1		+		17673	8410	11744	11859	23690	23690					0.012997343531878869
RQMMQWKT	8	Unmodified	_RQMMQWKT_					0	0	0		ENST00000468361.1_1_3:88650468-88650549:+|nuORF	ENST00000468361.1_1_3:88650468-88650549:+|nuORF	ENST00000468361.1_1_3:88650468-88650549:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2737426757812	2	554.773154	1107.53175	-0.1106	-6.1359E-05	-1.1042	-0.00061257	-1.2148	-0.00067393	554.7724942836852	22.618	0.59822	22.618	22.324	22.922	0					88	48	3	0	0	0	0.54097	1	2231	2231		0.69038	0	1	43323			17674	6654	11745	11860	23691	23691					-0.017710212121528457
RQNLIDNAI	9	Unmodified	_RQNLIDNAI_					0	0	0		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7935180664062	2	528.793455	1055.57236	-0.013701	-7.2448E-06	-0.2269	-0.00011998	-0.2406	-0.00012723	528.7933338917763	33.256	0.42402	33.33	33.169	33.593	0.074322					36	16	3	0	0	0	0.32112	1	5157	5157		3.9444	0	1	67679			17675	1406	11746	11861	23692	23692					0.046793597034593404
RQNLRKYFF	9	Unmodified	_RQNLRKYFF_					0	0	0			REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.5717468261719	3	424.571768	1270.69348	0.25295	0.0001074	-0.041695	-1.7702E-05	0.21126	8.9694E-05	424.5716945214482	45.987	2.4588	45.987	45.586	48.045	0					275	98	6	0	0	0	0.2125	6	9190	9190;9239;9362;9415;9459;9525		17.113	1.8644	1	1452600	+		17676	8721	11747	11862	23693;23694;23695;23696;23697;23698	23693					0.06895607136789295
RQNLRKYFF	9	Unmodified	_RQNLRKYFF_					0	0	0			REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.5717468261719	3	424.571768	1270.69348	-0.091767	-3.8962E-05	0.22699	9.6374E-05	0.13523	5.7413E-05	424.57194575815	45.626	1.2349	45.712	45.395	46.63	0.085617					190	54	5	0	0	0	0.2125	3	9039	8811;9039;9087		17.113	1.8644	1	3527300	+		17677	8721	11747	11862	23699;23700;23701	23700					0.06895607136789295
RQNLRKYFF	9	Unmodified	_RQNLRKYFF_					0	0	0			REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.9061584472656	3	424.571768	1270.69348	0.16091	6.8319E-05	0.20455	8.6848E-05	0.36547	0.00015517	424.5717931475846	46.61	1.9622	46.693	46.577	48.539	0.083092					142	82	2	0	0	0	0.28472	2	9129	9129;9157		8.7454	0.58988	1	250720	+		17678	8721	11747	11862	23702;23703	23702					0.06895607136789295
RQNLRKYFF	9	Unmodified	_RQNLRKYFF_					0	0	0			REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.9061584472656	3	424.571768	1270.69348	0.16091	6.8319E-05	0.20455	8.6848E-05	0.36547	0.00015517	424.5717931475846	46.61	1.9622	46.693	46.577	48.539	0.083092					142	82	2	0	0	0	0.25052	1	9129	9129		8.7454	0.58988	1	250720	+		17679	8721	11747	11862	23704	23704					0.06895607136789295
RQPFPPSFPH	10	Unmodified	_RQPFPPSFPH_					0	0	0			REV__nc|ENSG00000063176|Q9NRA0-5|SPHK2	REV__nc|ENSG00000063176|Q9NRA0-5|SPHK2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3252563476562	2	605.311815	1208.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.83	1	37.915	37.415	38.415	0.084476								0	0	0	0.33984	1	6513	6513		0.40072	0	1		+		17680	12752	11748	11863	23705	23705					0.013116563200355813
RQPQPPEVP	9	Unmodified	_RQPQPPEVP_					0	0	0		SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|3|1|sense;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|21|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|3|1|sense	SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|3|1|sense	SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|3|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2647705078125	2	524.282723	1046.55089	-0.21077	-0.0001105	0.080009	4.1947E-05	-0.13076	-6.8556E-05	524.2826627614079	27.118	0.43615	27.204	27.029	27.465	0.086699					85	29	4	0	0	0	0.25504	1	3291	3291		4.756	1.4747	1	264430			17681	13404	11749	11864	23706	23706					0.02947974674748366
RQPRITAA	8	Unmodified	_RQPRITAA_					0	0	0		ENST00000493668.1_1_X:9866192-9900301:+|nuORF	ENST00000493668.1_1_X:9866192-9900301:+|nuORF	ENST00000493668.1_1_X:9866192-9900301:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7723083496094	2	456.772326	911.530098	0.85464	0.00039038	-0.73105	-0.00033392	0.1236	5.6455E-05	456.7719197423629	84.83	0.67796	84.83	84.633	85.311	0					76	26	4	0	0	0	0.53858	1	21034	21034		2.3027	0	1	1440200			17682	6820	11750	11865	23707	23707					0.07079429085729316
RQPSLFYHL	9	Unmodified	_RQPSLFYHL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8142700195312	2	580.81419	1159.61383	0.30542	0.00017739	-0.1451	-8.4275E-05	0.16032	9.3118E-05	580.8139793672302	50.073	0.66411	50.073	49.85	50.514	0					70	23	4	0	0	0	0.048027	1	10351	10351		43.772	22.235	1	469590			17683	5297	11751	11866	23708	23708					0.040405404628018005
RQPSLFYHL	9	Unmodified	_RQPSLFYHL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.8143920898438	2	580.81419	1159.61383	0.44199	0.00025671	-0.18339	-0.00010652	0.2586	0.0001502	580.8139213599005	49.99	0.92413	50.063	49.817	50.741	0.07312					70	32	4	0	0	0	0.13341	3	10151	10151;10201;10255		26.268	12.362	1	465570			17684	5297	11751	11866	23709;23710;23711	23709					0.040405404628018005
RQPVPLRRA	9	Unmodified	_RQPVPLRRA_					0	0	0			REV__ENST00000492561.1_1_22:39078186-39079843:+|nuORF	REV__ENST00000492561.1_1_22:39078186-39079843:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.34375	2	546.841074	1091.66759	-0.14288	-7.813E-05	2.4668	0.0013489	2.3239	0.0012708	546.8423650422557	26.606	0.33279	26.606	26.455	26.788	0					29	21	2	0	0	0	0.34704	1	3297	3297		0.52476	0	1	17920	+		17685	12157	11752	11867	23712	23712					0.12542757685173456
RQPYIWLTI	9	Unmodified	_RQPYIWLTI_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.3314208984375	2	595.340041	1188.66553	0.37957	0.00022597	0.1221	7.2689E-05	0.50166	0.00029866	595.3399242210296	74.741	0.38155	74.741	74.579	74.961	0					31	13	3	0	0	0	0.27332	1	17863	17863		10.074	3.3508	1	193240			17686	914	11753	11868	23713	23713					0.07874284156696376
RQPYIWLTI	9	Unmodified	_RQPYIWLTI_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3402709960938	2	595.340041	1188.66553	0.26638	0.00015859	-0.060936	-3.6277E-05	0.20545	0.00012231	595.3400734570904	74.673	0.43228	74.722	74.567	74.999	0.048546					23	15	2	0	0	0	0.03472	1	17680	17680		47.749	29.602	1	231960			17687	914	11753	11868	23714	23714					0.07874284156696376
RQQEDCAIW	9	Unmodified	_RQQEDCAIW_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.76171875	2	574.761297	1147.50804	-0.033157	-1.9057E-05	-0.15891	-9.1336E-05	-0.19207	-0.00011039	574.7611723373727	24.511	1.1892	24.607	24.251	25.44	0.096075					203	106	3	0	0	0	0.34646	1	2692	2692		0.6015	0	1	69581			17688	5346	11754	11869	23715	23715					-0.059811634449943085
RQQQPLTL	8	Unmodified	_RQQQPLTL_					0	0	0			REV__ENSG00000036828|ENST00000639785|CASR	REV__ENSG00000036828|ENST00000639785|CASR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7946472167969	2	492.285266	982.555979	0.24239	0.00011932	-0.19871	-9.7823E-05	0.043675	2.15E-05	492.28522529481853	91.485	0.30082	91.52	91.284	91.585	0.035446					12	10	2	0	0	0	0.3576	1	22791	22791		2.3027	0	1	62175	+		17689	8017	11755	11870	23716	23716					0.06400278537375925
RQRELVLS	8	Unmodified	_RQRELVLS_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7901916503906	2	500.79854	999.582528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.382	1	89.414	88.914	89.914	0.032257								0	0	0	0.38822	1	22156	22156		10.074	0	1		+		17690	9404	11756	11871	23717	23717					0.08271967428709104
RQRFNRGCKA	10	Unmodified	_RQRFNRGCKA_					0	0	0			REV__nc|ENSG00000197362|Q8N393-2|ZNF786	REV__nc|ENSG00000197362|Q8N393-2|ZNF786	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3179321289062	2	618.330547	1234.64654	-0.041184	-2.5466E-05	1.789	0.0011062	1.7478	0.0010807	618.8329115744182	47.322	0.14088	47.322	47.231	47.372	0					6	4	2	0	0	0	0.31838	1	9515	9515		1.4819	0.15237	1	29509	+		17691	10853	11757	11872	23718	23718					0.03860424314007105
RQRHLENFRIR	11	Unmodified	_RQRHLENFRIR_					0	0	0		ENSG00000103599|ENST00000335894|IQCH;nc|ENSG00000103599|Q86VS3-3|IQCH;nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7944641113281	3	508.958797	1523.85456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.452	1	98.452	97.952	98.952	0								0	0	0	0.34185	1	25074	25074		0.094841	0	1				17692	1383	11758	11873	23719	23719					0.11358749502710452
RQRPHNFLL	9	Unmodified	_RQRPHNFLL_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8660278320312	2	590.838531	1179.66251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.192	1	12.192	11.692	12.692	0								0	0	0	0.2927	1	31	31		0.52476	0	1		+		17693	8746	11759	11874	23720	23720					0.0798645382255927
RQRPLSILPQ	10	Unmodified	_RQRPLSILPQ_					0	0	0			REV__BRINP3|p.K503Tfs*12|1|0.16|ENSG00000162670|chr1:190098801-190098811|TCTGTCCGTTT/-|frameshift_variant	REV__BRINP3|p.K503Tfs*12|1|0.16|ENSG00000162670|chr1:190098801-190098811|TCTGTCCGTTT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.3670043945312	2	604.367121	1206.71969	0.68229	0.00041235	-0.85621	-0.00051747	-0.17393	-0.00010512	604.3665261151659	99.832	0.66259	99.832	99.659	100.32	0					89	35	4	0	0	0	0.44496	1	25513	25513		5.7319	0	1	663140	+		17694	7742	11760	11875	23721	23721					0.12459876308275852
RQRPLSILPQ	10	Unmodified	_RQRPLSILPQ_					0	0	0			REV__BRINP3|p.K503Tfs*12|1|0.16|ENSG00000162670|chr1:190098801-190098811|TCTGTCCGTTT/-|frameshift_variant	REV__BRINP3|p.K503Tfs*12|1|0.16|ENSG00000162670|chr1:190098801-190098811|TCTGTCCGTTT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.3667602539062	2	604.367121	1206.71969	0.79696	0.00048166	-0.90846	-0.00054904	-0.1115	-6.7385E-05	604.3664161516286	99.864	0.62991	99.907	99.709	100.34	0.042839					86	38	3	0	0	0	0.45945	1	25380	25380		2.9952	0	1	415260	+		17695	7742	11760	11875	23722	23722					0.12459876308275852
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3103637695312	3	525.309718	1572.90732	0.48828	0.0002565	0.046084	2.4208E-05	0.53436	0.00028071	525.3096752915545	98.808	1.1811	98.808	98.4	99.581	0					114	73	2	0	0	0	0.4185	1	25206	25206		0.094841	0	1	123480			17696	1438	11761	11876	23723	23723					0.14378707565538207
RQRRKRELRTF	11	Unmodified	_RQRRKRELRTF_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.9788208007812	3	515.97808	1544.91241	0.17588	9.0751E-05	0.31622	0.00016316	0.4921	0.00025391	515.9781320270214	104.61	0.63579	104.61	104.38	105.01	0					152	61	3	0	0	0	0.41856	1	26881	26881		0.08335	0.08335	1	253980			17697	3962	11762	11877	23724	23724					0.16175011428163089
RQSIPLLMDA	10	Unmodified	_RQSIPLLMDA_					0	0	0			REV__ENST00000397901.7_1_16:89712093-89712183:-|nuORF	REV__ENST00000397901.7_1_16:89712093-89712183:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3131713867188	2	572.313166	1142.61178	-0.10724	-6.1376E-05	0.26624	0.00015237	0.159	9.0996E-05	572.3132119461002	30.147	0.30196	30.223	30.1	30.402	0.075403					23	19	2	0	0	0	0.4753	1	4220	4220		0	0	1	17098	+		17698	11737	11763	11878	23725	23725					0.04617743662720386
RQSIPLLMDA	10	Unmodified	_RQSIPLLMDA_					0	0	0			REV__ENST00000397901.7_1_16:89712093-89712183:-|nuORF	REV__ENST00000397901.7_1_16:89712093-89712183:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.313166	1142.61178	-0.10724	-6.1376E-05	0.26624	0.00015237	0.159	9.0996E-05	572.3132119461002	30.147	0.30196	30.223	30.1	30.402	0.075403	0.0019653	-8.2444E-08	NaN	0	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17098	+		17699	11737	11763	11878							0.04617743662720386
RQTEVFTLF	9	Unmodified	_RQTEVFTLF_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8058471679688	2	570.806031	1139.59751	0.35773	0.00020419	-0.008432	-4.813E-06	0.3493	0.00019938	570.8058626764815	68.198	0.64375	68.198	67.973	68.617	0					37	22	2	0	0	0	0.12214	1	15857	15857		27.629	4.8925	1	189430			17700	1220	11764	11879	23726	23726					0.0332941450603812
RQTEVFTLF	9	Unmodified	_RQTEVFTLF_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	570.806031	1139.59751	0.35773	0.00020419	-0.008432	-4.813E-06	0.3493	0.00019938	570.8058626764815	68.198	0.64375	68.198	67.973	68.617	0	-0.025557	-9.5473E-05	NaN	27.629	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189430			17701	1220	11764	11879							0.0332941450603812
RQTEVFTLF	9	Unmodified	_RQTEVFTLF_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	570.806031	1139.59751	0.43931	0.00025076	0.1907	0.00010885	0.63001	0.00035961	570.8060626439958	68.185	0.51542	68.249	68.045	68.56	0.063507	0.025557	0.00013186	NaN	27.629	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182820			17702	1220	11764	11879							0.0332941450603812
RQWSQGRS	8	Unmodified	_RQWSQGRS_					0	0	0		ENST00000218056.9_1_X:48455906-48456035:+|nuORF	ENST00000218056.9_1_X:48455906-48456035:+|nuORF	ENST00000218056.9_1_X:48455906-48456035:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.26190185546875	2	502.754664	1003.49478	-0.19646	-9.8771E-05	-1.6388	-0.00082393	-1.8353	-0.0009227	502.7538061375884	27.309	0.14684	27.309	27.217	27.364	0					13	8	2	0	0	0	0.3576	1	3524	3524		2.3027	0	1	19728			17703	5796	11765	11880	23727	23727					-0.0068323344204372916
RQWVKWPM	8	Unmodified	_RQWVKWPM_					0	0	0			REV__ENST00000509200.5_1_17:47574227-47574383:+|nuORF	REV__ENST00000509200.5_1_17:47574227-47574383:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8001708984375	2	565.800029	1129.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.184	1	20.184	19.684	20.684	0								0	0	0	0.38822	1	1540	1540		0.69038	0.088878	1		+		17704	12247	11766	11881	23728	23728					0.02589519281855246
RQYGSEGRFTF	11	Unmodified	_RQYGSEGRFTF_					0	0	0		ENST00000507578.1_1_5:177019655-177021165:+|nuORF;ENST00000505521.1_1_5:177019550-177020791:+|nuORF;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;ENSG00000184840|ENST00000332598|TMED9	ENST00000507578.1_1_5:177019655-177021165:+|nuORF	ENST00000507578.1_1_5:177019655-177021165:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.8859558105469	3	449.886192	1346.63675	-0.34311	-0.00015436	-0.15337	-6.9E-05	-0.49648	-0.00022336	449.8861036730146	40.902	0.52382	40.992	40.771	41.295	0.089642					45	20	3	0	0	0	0.27523	1	7436	7436		20.871	15.974	1	110610			17705	3699	11767	11882	23729	23729					-0.022704852103970552
RQYGSEGRFTF	11	Unmodified	_RQYGSEGRFTF_					0	0	0		ENST00000507578.1_1_5:177019655-177021165:+|nuORF;ENST00000505521.1_1_5:177019550-177020791:+|nuORF;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;ENSG00000184840|ENST00000332598|TMED9	ENST00000507578.1_1_5:177019655-177021165:+|nuORF	ENST00000507578.1_1_5:177019655-177021165:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	449.886192	1346.63675	-0.27799	-0.00012506	-0.90587	-0.00040754	-1.1839	-0.0005326	449.8857425539972	41.013	0.50383	41.013	40.787	41.291	0	0.01046	-0.00080014	NaN	20.871	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59450			17706	3699	11767	11882							-0.022704852103970552
RRAGAPFGPG	10	Unmodified	_RRAGAPFGPG_					0	0	0		tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7992248535156	2	493.26995	984.525347	0.26048	0.00012848	-3.3007	-0.0016281	-3.0402	-0.0014997	493.26542683543397	95.279	0.21407	95.318	95.193	95.407	0.038872					18	8	3	0	0	0	0.31712	1	23938	23938		6.7232	0	1	38905			17707	13725	11768	11883	23730	23730					0.03246544942999208
RRAIFVFWI	9	Unmodified	_RRAIFVFWI_					0	0	0		nc|ENSG00000112706|Q17R60-2|IMPG1;IMPG1|p.R517Dfs*13|1|0.48|ENSG00000112706|chr6:75950837-75950838|-/GACCATATCTTCGCCACCTGCACTTGATC|frameshift_variant;ENSG00000112706|ENST00000369950|IMPG1	nc|ENSG00000112706|Q17R60-2|IMPG1	nc|ENSG00000112706|Q17R60-2|IMPG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3246459960938	2	604.358568	1206.70258	0.72588	0.00043869	-1.4183	-0.00085719	-0.69246	-0.00041849	604.3575709526823	101.82	0.38204	101.87	101.66	102.04	0.042656					60	35	2	0	0	0	0.34646	1	25890	25890		0.6015	0.076735	1	65186			17708	1774	11769	11884	23731	23731					0.10750000493135303
RRAIFVFWI	9	Unmodified	_RRAIFVFWI_					0	0	0		nc|ENSG00000112706|Q17R60-2|IMPG1;IMPG1|p.R517Dfs*13|1|0.48|ENSG00000112706|chr6:75950837-75950838|-/GACCATATCTTCGCCACCTGCACTTGATC|frameshift_variant;ENSG00000112706|ENST00000369950|IMPG1	nc|ENSG00000112706|Q17R60-2|IMPG1	nc|ENSG00000112706|Q17R60-2|IMPG1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	604.358568	1206.70258	0.5402	0.00032648	-1.6907	-0.0010218	-1.1505	-0.00069529	604.3572770807182	101.85	0.36172	101.85	101.71	102.07	0	-0.0074187	-0.00024583	NaN	0.6015	42	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77442			17709	1774	11769	11884							0.10750000493135303
RRARRSPPSR	10	Unmodified	_RRARRSPPSR_					0	0	0		ENST00000418115.5_1_3:49449357-49449522:-|nuORF	ENST00000418115.5_1_3:49449357-49449522:-|nuORF	ENST00000418115.5_1_3:49449357-49449522:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8699340820312	2	619.868686	1237.72282	0.1373	8.5111E-05	1.4088	0.00087324	1.5461	0.00095835	619.8693975449752	92.491	0.62921	92.491	92.164	92.793	0					35	23	2	0	0	0	0.46899	1	23254	23254		1.1933	0.12188	1	92143			17710	6437	11770	11885	23732	23732					0.11346564205632603
RRCAFWAH	8	Unmodified	_RRCAFWAH_					0	0	0		ENST00000246672.3_1_17:38252288-38252739:-|nuORF	ENST00000246672.3_1_17:38252288-38252739:-|nuORF	ENST00000246672.3_1_17:38252288-38252739:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7427368164062	2	523.758695	1045.50284	-0.56833	-0.00029767	0.52422	0.00027456	-0.044115	-2.3106E-05	523.7590286206289	42.025	0.85249	42.025	41.773	42.626	0					74	29	4	0	0	0	0.53345	1	8084	8084		5.7604	0.46354	1	868340			17711	5832	11771	11886	23733	23733					-0.018093777262947697
RRCGLGPSYYH	11	Unmodified	_RRCGLGPSYYH_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2138366699219	3	436.880384	1307.61932	0.21591	9.4326E-05	-1.1826	-0.00051663	-0.96664	-0.00042231	437.21447975101194	96.257	0.52082	96.297	95.962	96.483	0.039772					38	28	2	0	0	0	0.41309	1	24273	24273		1.3296	0.11481	1	160090	+		17712	12789	11772	11887	23734	23734					-0.022181040170380584
RRCIFGKGCE	10	Unmodified	_RRCIFGKGCE_					0	0	0			REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF	REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.788818359375	2	584.789335	1167.56412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.058	1	18.058	17.558	18.558	0								0	0	0	0.34018	1	1043	1043		0	0	1		+		17713	11121	11773	11888	23735	23735					-0.012962338091256242
RRCKAPVL	8	Unmodified	_RRCKAPVL_					0	0	0			REV__ENST00000602009.5_1_19:16512885-16513104:-|nuORF	REV__ENST00000602009.5_1_19:16512885-16513104:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.78656005859375	2	471.786921	941.55929	0.2748	0.00012965	-0.74361	-0.00035083	-0.46882	-0.00022118	471.78645025084245	88.224	0.63548	88.224	87.948	88.584	0					56	23	3	0	0	0	0.49441	1	22033	22033		13.508	0.97634	1	490200	+		17714	12625	11774	11889	23736	23736					0.08617250110376062
RRCLIDDREM	10	Unmodified	_RRCLIDDREM_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.5483703613281	3	436.216668	1305.62817	-0.056134	-2.4487E-05	-0.19264	-8.4034E-05	-0.24878	-0.00010852	436.2169527942295	24.905	0.56486	24.905	24.852	25.417	0					58	44	2	0	0	0	0.3184	1	2840	2840		1.7423	0	1	23398			17715	5516	11775	11890	23737	23737					-0.012414984428914977
RRCMPLHSRV	10	Unmodified	_RRCMPLHSRV_					0	0	0		ENSG00000248329|ENST00000507152|APELA	ENSG00000248329|ENST00000507152|APELA	ENSG00000248329|ENST00000507152|APELA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8361206054688	2	627.837151	1253.65975	0.26113	0.00016395	1.2427	0.00078024	1.5039	0.00094419	627.838032604269	47.458	0.40828	47.458	47.263	47.672	0					24	13	3	0	0	0	0.44727	1	9582	9582		5.2969	0.76802	1	93435			17716	5673	11776	11891	23738	23738					0.0430653910170804
RRCTVYVSM	9	Unmodified	_RRCTVYVSM_					0	0	0			REV__ENST00000473136.4_2_3:88178118-88178850:+|nuORF	REV__ENST00000473136.4_2_3:88178118-88178850:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7801513671875	2	557.778436	1113.54232	0.29681	0.00016555	1.8423	0.0010276	2.1391	0.0011932	557.7799624331745	51.89	1.8734	51.89	51.239	53.113	0					206	65	5	0	0	0	0.12809	1	10858	10858		26.884	0	1	2896500	+		17717	12040	11777	11892	23739	23739					-0.009910385577313718
RRCTVYVSM	9	Unmodified	_RRCTVYVSM_					0	0	0			REV__ENST00000473136.4_2_3:88178118-88178850:+|nuORF	REV__ENST00000473136.4_2_3:88178118-88178850:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7802124023438	2	557.778436	1113.54232	0.47244	0.00026352	1.987	0.0011083	2.4595	0.0013719	557.7799490639568	51.812	1.8176	51.879	51.333	53.151	0.067173					185	71	5	0	0	0	0.18364	3	10703	10703;10742;10789		20.454	0	1	2527700	+		17718	12040	11777	11892	23740;23741;23742	23740					-0.009910385577313718
RRDKAGQR	8	Unmodified	_RRDKAGQR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7851867675781	2	493.783756	985.552959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.728	1	49.801	49.301	50.301	0.07312								0	0	0	0.38822	1	10099	10099		2.3027	0.24298	1				17719	3593	11778	11893	23743	23743					0.059604482032341366
RRDRFALH	8	Unmodified	_RRDRFALH_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.762939453125	2	535.801949	1069.58934	-0.22201	-0.00011895	-0.63377	-0.00033957	-0.85578	-0.00045853	535.801615945016	40.591	0.81495	40.591	40.26	41.075	0					69	28	4	0	0	0	0.3576	1	7379	7379		0.6015	0.076735	1	562830	+		17720	10130	11779	11894	23744	23744					0.05733325099936337
RRDRFALH	8	Unmodified	_RRDRFALH_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	535.801949	1069.58934	0.10832	5.8036E-05	-0.90245	-0.00048354	-0.79414	-0.0004255	535.8014745616777	40.515	0.79544	40.605	40.215	41.011	0.089645	0.0066506	-0.00015225	NaN	0.6015	72	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505860	+		17721	10130	11779	11894							0.05733325099936337
RRDWPLHVM	9	Unmodified	_RRDWPLHVM_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2153015136719	3	403.881837	1208.62368	-0.1793	-7.2416E-05	-1.8251	-0.00073711	-2.0044	-0.00080953	403.8811423295403	44.505	0.56877	44.592	44.419	44.988	0.08754					43	20	4	0	0	0	0.3182	1	8553	8553		2.4985	0	1	97408			17722	3647	11780	11895	23745	23745					0.02771405196494925
RREDEAKI	8	Unmodified	_RREDEAKI_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7774963378906	2	508.777805	1015.54106	0.14588	7.4219E-05	-0.4714	-0.00023984	-0.32552	-0.00016562	508.7775229274775	18.107	0.31858	18.191	18.045	18.364	0.083696					68	38	3	0	0	0	0.51967	1	996	996		10.074	1.3285	1	55093			17723	1166	11781	11896	23746	23746					0.03390786669365298
RREQVSSEL	9	Unmodified	_RREQVSSEL_					0	0	0			REV__ENST00000462445.1_1_10:70847907-70863646:+|nuORF	REV__ENST00000462445.1_1_10:70847907-70863646:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2936401367188	2	552.293819	1102.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.73	1	103.76	103.26	104.26	0.03791								0	0	0	0.28527	1	26501	26501		2.0598	0	1		+		17724	11968	11782	11897	23747	23747					0.025901543525378656
RREQVSSEL	9	Unmodified	_RREQVSSEL_					0	0	0			REV__ENST00000462445.1_1_10:70847907-70863646:+|nuORF	REV__ENST00000462445.1_1_10:70847907-70863646:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2923583984375	2	552.293819	1102.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.24	1	104.28	103.78	104.78	0.03791								0	0	0	0.28527	1	26647	26647		2.0598	0	1		+		17725	11968	11782	11897	23748	23748					0.025901543525378656
RRETYKVT	8	Unmodified	_RRETYKVT_					0	0	0			REV__nc|ENSG00000113719|Q969X5-2|ERGIC1	REV__nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7969360351562	2	526.795998	1051.57744	-0.18262	-9.6205E-05	-0.25325	-0.00013341	-0.43587	-0.00022962	526.7959575293813	27.029	0.28491	27.116	27.012	27.297	0.086699					23	20	2	0	0	0	0.54097	1	3307	3307		0.69038	0	1	10376	+		17726	8749	11783	11898	23749	23749					0.05371663566097595
RRFPDWWALLV	11	Unmodified	_RRFPDWWALLV_					0	0	0			REV__ENST00000467878.1_1_2:112638179-112638251:-|nuORF	REV__ENST00000467878.1_1_2:112638179-112638251:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.9402160644531	3	486.93834	1457.79319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.258	1	47.341	46.841	47.841	0.083096								0	0	0	0.33867	1	9353	9353		1.2148	0.4383	1		+		17727	11460	11784	11899	23750	23750					0.08260424750756101
RRFRCWFS	8	Unmodified	_RRFRCWFS_					0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2957153320312	2	579.292902	1156.57125	0.66138	0.00038313	3.0671	0.0017767	3.7285	0.0021599	579.2939327423608	97.734	0.48604	97.734	97.461	97.947	0					52	22	3	0	0	0	0.3576	1	24819	24819		4.756	0	1	105560	+		17728	10336	11785	11900	23751	23751					-0.0007713314641932811
RRGGTPRPLL	10	Unmodified	_RRGGTPRPLL_					0	0	0			REV__ENST00000321264.8_1_2:242707393-242707465:+|nuORF	REV__ENST00000321264.8_1_2:242707393-242707465:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8458862304688	2	561.846356	1121.67816	0.38303	0.00021521	-1.0524	-0.00059129	-0.66936	-0.00037608	561.8456410443935	90.957	0.86748	90.957	90.734	91.602	0					65	31	3	0	0	0	0.45794	1	22800	22800		3.2813	0	1	368300	+		17729	11395	11786	11901	23752	23752					0.12218740339585565
RRGGTPRPLL	10	Unmodified	_RRGGTPRPLL_					0	0	0			REV__ENST00000321264.8_1_2:242707393-242707465:+|nuORF	REV__ENST00000321264.8_1_2:242707393-242707465:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8458251953125	2	561.846356	1121.67816	0.18338	0.00010303	-0.78305	-0.00043995	-0.59967	-0.00033692	561.8457947596255	90.985	0.84721	91.02	90.683	91.53	0.035446					69	31	3	0	0	0	0.44246	1	22640	22640		6.2058	0	1	374160	+		17730	11395	11786	11901	23753	23753					0.12218740339585565
RRGPAGVV	8	Unmodified	_RRGPAGVV_					0	0	0		ENSG00000170703|ENST00000393382|TTLL6;nc|ENSG00000170703|Q8N841-4|TTLL6	ENSG00000170703|ENST00000393382|TTLL6	ENSG00000170703|ENST00000393382|TTLL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.7503356933594	2	406.248486	810.48242	0.07888	3.2045E-05	0.13856	5.6291E-05	0.21744	8.8336E-05	406.2484987448317	83.587	0.99162	83.609	83.304	84.295	0.021744					119	35	5	0	0	0	0.54081	1	20589	20589		0.79363	0	1	5313400			17731	4406	11787	11902	23754	23754					0.06959774885569914
RRHAELAPLA	10	Unmodified	_RRHAELAPLA_					0	0	0		nc|ENSG00000120662|O75570-2|MTRF1;ENSG00000120662|ENST00000379480|MTRF1	nc|ENSG00000120662|O75570-2|MTRF1	nc|ENSG00000120662|O75570-2|MTRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3305053710938	2	567.330539	1132.64652	0.13865	7.8661E-05	-0.21875	-0.0001241	-0.080096	-4.5441E-05	567.3303349058168	86.524	2.9324	86.524	85.605	88.537	0					378	115	5	0	0	0	0.41688	1	21657	21657		10.074	10.074	1	7160200			17732	2128	11788	11903	23755	23755					0.08550747585650242
RRHKRFVS	8	Unmodified	_RRHKRFVS_					0	0	0			REV__ENSG00000167394|ENST00000300849|ZNF668	REV__ENSG00000167394|ENST00000300849|ZNF668	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3248901367188	2	543.325591	1084.63663	-0.096599	-5.2485E-05	-1.0207	-0.00055459	-1.1173	-0.00060707	543.3249208345624	30.827	0.27908	30.827	30.698	30.978	0					25	13	2	0	0	0	0.54097	1	4582	4582		0.69038	0.69038	1	25290	+		17733	10116	11789	11904	23756	23756					0.09769604370922025
RRHQKKIR	8	Unmodified	_RRHQKKIR_					0	0	0		ATP10A|p.G786R|1|0.18|ENSG00000206190|chr15:25708289-25708289|C/G|missense_variant	ATP10A|p.G786R|1|0.18|ENSG00000206190|chr15:25708289-25708289|C/G|missense_variant	ATP10A|p.G786R|1|0.18|ENSG00000206190|chr15:25708289-25708289|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3614501953125	2	561.359965	1120.70538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.23	112.73	113.73	0.013817								0	0	0	0.38822	1	28893	28893		2.3027	1.6124	1				17734	66	11790	11905	23757	23757					0.14985268670625373
RRHRRNKQ	8	Unmodified	_RRHRRNKQ_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8432006835938	2	575.842471	1149.67039	0.34657	0.00019957	1.0537	0.00060675	1.4002	0.00080632	575.8428036821286	88.716	0.56789	88.716	88.486	89.053	0					52	23	3	0	0	0	0.54097	1	22053	22053		0.69038	0	1	180170	+		17735	11029	11791	11906	23758	23758					0.10154025862675553
RRHVTDGLLK	10	Unmodified	_RRHVTDGLLK_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.856201171875	2	597.856921	1193.69929	-0.093081	-5.5649E-05	-0.42101	-0.0002517	-0.51409	-0.00030735	597.8564079419388	90.383	0.57297	90.418	90.109	90.682	0.034065					46	23	3	0	0	0	0.46827	1	22520	22520		1.3295	0.63916	1	224010			17736	2126	11792	11907	23759	23759					0.11018705648439209
RRIVVYFKM	9	Unmodified	_RRIVVYFKM_					0	0	0			REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant	REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.5738830566406	3	404.574233	1210.70087	-0.32829	-0.00013282	-0.81698	-0.00033053	-1.1453	-0.00046335	404.57404275466064	41.681	1.7442	41.681	41.172	42.916	0					97	61	2	0	0	0	0.3354	2	7888	7888;7939		1.0715	0	1	50010	+		17737	10089	11793	11908	23760;23761	23760					0.1039462341284434
RRKHGIKFLP	10	Unmodified	_RRKHGIKFLP_					0	0	0			REV__nc|ENSG00000125257|O15439-4|ABCC4	REV__nc|ENSG00000125257|O15439-4|ABCC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.393310546875	2	626.393474	1250.77239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.75	1	107.75	107.25	108.25	0								0	0	0	0.33487	1	27807	27807		6.2058	0.9089	1		+		17738	8968	11794	11909	23762	23762					0.15703879161742407
RRKHGKRPNKH	11	Unmodified	_RRKHGKRPNKH_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.9518127441406	3	471.951865	1412.83377	0.15732	7.425E-05	-0.21481	-0.00010138	-0.057488	-2.7132E-05	471.9516706246827	101.05	0.77176	101.05	100.74	101.51	0					149	45	5	0	0	0	0.41405	1	25878	25878		1.1098	0.6038	1	383550			17739	1273	11795	11910	23763	23763					0.14386203913727513
RRKHMRIH	8	Unmodified	_RRKHMRIH_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.33349609375	2	567.332893	1132.65123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.462	1	22.462	21.962	22.962	0								0	0	0	0.38822	1	2138	2138		0	0	1				17740	2497	11796	11911	23764	23764					0.09021353247430852
RRKKKKKKK	9	Unmodified	_RRKKKKKKK_					0	0	0			REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF	REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.3419799804688	2	614.44604	1226.87753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.992	1	47.075	46.575	47.575	0.083096								0	0	0	0.29525	1	9273	9273		0	0	1		+		17741	11879	11797	11912	23765	23765					0.273164203581473
RRKKTTTT	8	Unmodified	_RRKKTTTT_					0	0	0			REV__RIMS3|p.A42T|1|0.21|ENSG00000117016|chr1:40641802-40641802|C/T|missense_variant	REV__RIMS3|p.A42T|1|0.21|ENSG00000117016|chr1:40641802-40641802|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.3040771484375	2	496.30399	990.593427	0.50531	0.00025079	-0.23888	-0.00011856	0.26643	0.00013223	496.30379405199284	78.744	2.0165	78.744	78.153	80.169	0					103	69	2	0	0	0	0.54199	1	19409	19409		0	0	1	494570	+		17742	12975	11798	11913	23766	23766					0.09775369802980549
RRKQDYGP	8	Unmodified	_RRKQDYGP_					0	0	0		ENSG00000160993|ENST00000292566|ALKBH4	ENSG00000160993|ENST00000292566|ALKBH4	ENSG00000160993|ENST00000292566|ALKBH4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2718200683594	2	510.27269	1018.53083	-0.40713	-0.00020775	-1.1057	-0.00056421	-1.5128	-0.00077196	510.2720466369122	16.086	0.18147	16.086	16.028	16.21	0					32	21	2	0	0	0	0.54081	1	661	661		0.79363	0	1	22465			17743	3789	11799	11914	23767	23767					0.022302237348071685
RRKWSQKRKYR	11	Unmodified	_RRKWSQKRKYR_					0	0	0		ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8154296875	3	531.318325	1590.93315	0.62665	0.00033295	2.2475	0.0011942	2.8742	0.0015271	531.319394515478	98.777	0.076408	98.819	98.758	98.834	0.041931					5	3	2	0	0	0	0.31101	1	25004	25004		0.094841	0	1	34582			17744	7255	11800	11915	23768	23768					0.16131601807819607
RRLAFYMLI	9	Unmodified	_RRLAFYMLI_					0	0	0		ENST00000474289.6_1_6:127664143-127664416:-|nuORF	ENST00000474289.6_1_6:127664143-127664416:-|nuORF	ENST00000474289.6_1_6:127664143-127664416:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.2870483398438	2	591.844436	1181.67432	0.37086	0.00021949	-3.9887	-0.0023607	-3.6179	-0.0021412	592.3439525173648	88.826	0.31577	88.858	88.772	89.088	0.032265					18	12	2	0	0	0	0.24263	1	21974	21974		12.532	1.0368	1	101350			17745	6695	11801	11916	23769	23769					0.09074934521527211
RRLASRADGPG	11	Unmodified	_RRLASRADGPG_					0	0	0		ENST00000434837.7_1_6:37664592-37664970:-|nuORF	ENST00000434837.7_1_6:37664592-37664970:-|nuORF	ENST00000434837.7_1_6:37664592-37664970:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3206176757812	2	578.320703	1154.62685	0.37728	0.00021819	0.086306	4.9913E-05	0.46359	0.0002681	578.320677221397	86.551	1.9141	86.579	85.666	87.58	0.027573					143	78	3	0	0	0	0.41309	1	21577	21577		1.3295	1.3295	1	541340			17746	6502	11802	11917	23770	23770					0.055723715748854374
RRLDNMPIFS	10	Unmodified	_RRLDNMPIFS_					0	0	0		HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1;ENST00000493413.1_1_1:185934944-185947193:+|nuORF	HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.875	2	624.829514	1247.64448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.46	1	103.46	102.96	103.96	0								0	0	0	0.33528	1	26597	26597		5.7319	0.83484	1				17747	3148	11803	11918	23771	23771					0.030559507855286938
RRLLASIY	8	Unmodified	_RRLLASIY_					0	0	0			REV__ENSG00000197380|ENST00000391916|DACT3	REV__ENSG00000197380|ENST00000391916|DACT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.3035583496094	2	496.306001	990.597449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.753	1	78.783	78.283	79.283	0.030159								0	0	0	0.38822	1	18923	18923		0.69038	0	1		+		17748	10854	11804	11919	23772	23772					0.1017745929668763
RRLPYVTRERI	11	Unmodified	_RRLPYVTRERI_					0	0	0			REV__ENST00000463670.5_1_1:156252735-156254976:+|nuORF	REV__ENST00000463670.5_1_1:156252735-156254976:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.9590759277344	3	486.959915	1457.85791	0.39416	0.00019194	-1.8546	-0.00090311	-1.4604	-0.00071117	486.9588535283052	97.514	0.5202	97.514	97.461	97.981	0					55	24	3	0	0	0	0.4185	1	24849	24849		0.094841	0	1	157540	+		17749	11976	11805	11920	23773	23773					0.14729999556698203
RRLQQRRLQHR	11	Unmodified	_RRLQQRRLQHR_					0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1;ENSG00000106624|ENST00000223357|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8128051757812	3	516.313574	1545.91889	0.58597	0.00030254	-3.0699	-0.001585	-2.4839	-0.0012825	516.3131896966793	98.205	0.45619	98.247	98.006	98.462	0.041931					36	23	2	0	0	0	0.31101	1	24838	24838		0.094841	0.094841	1	72950			17750	1530	11806	11921	23774	23774					0.1677694937952765
RRLTCPGF	8	Unmodified	_RRLTCPGF_					0	0	0		ENST00000344120.4_1_5:141704428-141704542:-|nuORF	ENST00000344120.4_1_5:141704428-141704542:-|nuORF	ENST00000344120.4_1_5:141704428-141704542:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2707824707031	2	475.255454	948.496355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.543	1	56.61	56.11	57.11	0.066452								0	0	0	0.38822	1	12171	12171		5.2307	0	1				17751	6098	11807	11922	23775	23775					0.02004684322344019
RRLVGWGG	8	Unmodified	_RRLVGWGG_					0	0	0		nc|ENSG00000106948|Q7Z591-6|AKNA	nc|ENSG00000106948|Q7Z591-6|AKNA	nc|ENSG00000106948|Q7Z591-6|AKNA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.18243408203125	2	450.761761	899.508969	0.15294	6.8938E-05	-1.5672	-0.00070644	-1.4143	-0.0006375	450.7608420086685	38.942	0.49958	39.029	38.795	39.295	0.08688					25	19	2	0	0	0	0.3576	1	6905	6905		0.79363	0.79363	1	30227			17752	7480	11808	11923	23776	23776					0.05519463776897737
RRLWNNFD	8	Unmodified	_RRLWNNFD_					0	0	0		nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8300170898438	2	560.785964	1119.55738	0.88453	0.00049603	-3.1557	-0.0017697	-2.2711	-0.0012736	560.7839753374614	80.45	0.17038	80.45	80.372	80.543	0					7	5	2	0	0	0	0.35759	1	19599	19599		13.508	0.97634	1	36229			17753	445	11809	11924	23777	23777					0.0023791262613030995
RRMGIEFEAE	10	Unmodified	_RRMGIEFEAE_					0	0	0		tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.303466796875	2	619.303329	1236.59211	-0.15024	-9.3042E-05	0.32326	0.0002002	0.17303	0.00010716	619.303477671373	17.204	0.5162	17.288	17.084	17.6	0.083696					110	63	2	0	0	0	0.47318	1	839	839		0.40072	0.050084	1	35185			17754	13450	11810	11925	23778	23778					-0.016726323480725114
RRMQQMAGH	9	Unmodified	_RRMQQMAGH_					0	0	0		nc|ENSG00000140488|Q96J87-4|CELF6;nc|ENSG00000140488|Q96J87-2|CELF6;nc|ENSG00000140488|Q96J87-3|CELF6;ENSG00000140488|ENST00000287202|CELF6	nc|ENSG00000140488|Q96J87-4|CELF6	nc|ENSG00000140488|Q96J87-4|CELF6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.771484375	2	557.771477	1113.5284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.654	1	26.654	26.154	27.154	0								0	0	0	0.29525	1	3320	3320		0	0	1				17755	3016	11811	11926	23779	23779					-0.02382271266128555
RRMWPLAF	8	Unmodified	_RRMWPLAF_					0	0	0		ENST00000481464.5_1_1:19927449-19952892:+|nuORF;ENST00000486890.5_1_1:19927449-19950128:+|nuORF;ENSG00000173436|ENST00000322753|MICOS10;ENST00000498642.5_1_1:19923539-19952083:+|nuORF	ENST00000481464.5_1_1:19927449-19952892:+|nuORF	ENST00000481464.5_1_1:19927449-19952892:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2852172851562	2	538.794746	1075.57494	0.43598	0.00023491	-3.5549	-0.0019154	-3.1189	-0.0016805	538.7924109237066	73.415	0.22848	73.467	73.42	73.649	0.052574					10	8	2	0	0	0	0.35713	1	17325	17325		14.582	3.7578	1	142780			17756	4546	11812	11927	23780	23780					0.04017536627429763
RRNILSGC	8	Unmodified	_RRNILSGC_					0	0	0			REV__ENST00000554015.5_1_14:64971609-64988262:+|nuORF	REV__ENST00000554015.5_1_14:64971609-64988262:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7508544921875	2	459.750536	917.486519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.553	1	37.638	37.138	38.138	0.084476								0	0	0	0.38822	1	6431	6431		0.69038	0	1		+		17757	12450	11813	11928	23781	23781					0.024474963169836883
RRNLLGNRQR	10	Unmodified	_RRNLLGNRQR_					0	0	0		ENST00000479293.5_1_2:73297674-73297713:-|nuORF	ENST00000479293.5_1_2:73297674-73297713:-|nuORF	ENST00000479293.5_1_2:73297674-73297713:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8822631835938	2	641.881793	1281.74903	0.38724	0.00024857	1.2231	0.00078509	1.6104	0.0010337	641.8824413311361	93.525	0.60059	93.563	93.22	93.82	0.037369					35	24	2	0	0	0	0.46746	1	23374	23374		1.4819	0.28856	1	67744			17758	6733	11814	11929	23782	23782					0.11942833377111128
RRNLMECTM	9	Unmodified	_RRNLMECTM_					0	0	0			REV__nc|ENSG00000151617|P25101-5|EDNRA	REV__nc|ENSG00000151617|P25101-5|EDNRA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.2675170898438	2	577.267378	1152.5202	0.83457	0.00048177	-1.1932	-0.00068879	-0.35863	-0.00020702	577.2668011201763	81.328	0.74866	81.328	81.087	81.836	0					63	25	4	0	0	0	0.10833	3	19840	19840;19888;19932		30.637	15.798	1	1285500	+		17759	9650	11815	11930	23783;23784;23785	23783					-0.04995586297786758
RRNLMECTM	9	Unmodified	_RRNLMECTM_					0	0	0			REV__nc|ENSG00000151617|P25101-5|EDNRA	REV__nc|ENSG00000151617|P25101-5|EDNRA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.2673950195312	2	577.267378	1152.5202	0.56119	0.00032396	-0.5729	-0.00033071	-0.011707	-6.7582E-06	577.2669405576681	81.311	0.85852	81.333	80.818	81.676	0.021866					63	30	3	0	0	0	0.15282	3	19725	19675;19725;19771		24.021	5.3179	1	1163700	+		17760	9650	11815	11930	23786;23787;23788	23787					-0.04995586297786758
RRNLMECTM	9	Unmodified	_RRNLMECTM_					0	0	0			REV__nc|ENSG00000151617|P25101-5|EDNRA	REV__nc|ENSG00000151617|P25101-5|EDNRA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	577.267378	1152.5202	0.56119	0.00032396	-0.5729	-0.00033071	-0.011707	-6.7582E-06	577.2669405576681	81.311	0.85852	81.333	80.818	81.676	0.021866	0.0021788	0.0004163	NaN	30.637	63	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1163700	+		17761	9650	11815	11930							-0.04995586297786758
RRNVRNFV	8	Unmodified	_RRNVRNFV_					0	0	0			REV__ENST00000427391.1_1_X:130917988-130930157:-|nuORF	REV__ENST00000427391.1_1_X:130917988-130930157:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2640991210938	2	530.809774	1059.60499	0.54074	0.00028703	0.86837	0.00046094	1.4091	0.00074797	530.8100863627786	88.102	0.1908	88.102	87.948	88.139	0					8	6	2	0	0	0	0.3576	1	21888	21888		2.5775	0.51773	1	53210	+		17762	11837	11816	11931	23789	23789					0.0775761161698938
RRPANFLYF	9	Unmodified	_RRPANFLYF_					0	0	0		ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.2868041992188	2	592.322183	1182.62981	0.3554	0.00021051	0.63729	0.00037748	0.99269	0.00058799	592.3210683222061	88.061	0.28543	88.091	87.965	88.251	0.030037					13	9	2	0	0	0	0.2491	1	21794	21794		8.5933	0.43775	1	48023			17763	5864	11817	11932	23790	23790					0.045802466996974545
RRPAPPIGTL	10	Unmodified	_RRPAPPIGTL_					0	0	0			REV__HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant	REV__HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7974243164062	2	539.330008	1076.64546	0.068763	3.7086E-05	2.0996	0.0011324	2.1683	0.0011695	539.3310923772403	72.087	0.256	72.087	71.972	72.228	0					12	8	2	0	0	0	0.31532	1	17036	17036		13.042	2.9685	1	53074	+		17764	12682	11818	11933	23791	23791					0.11020533216765216
RRPDVSLP	8	Unmodified	_RRPDVSLP_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2721862792969	2	470.272158	938.529764	-0.10101	-4.7502E-05	0.23864	0.00011222	0.13763	6.4722E-05	470.27209426349515	86.934	0.71979	86.962	86.706	87.426	0.027573					72	31	3	0	0	0	0.52924	1	21416	21416		8.5933	0	1	1434000	+		17765	9801	11819	11934	23792	23792					0.05804009365908769
RRPEVTVIPSF	11	Unmodified	_RRPEVTVIPSF_					0	0	0			REV__nc|ENSG00000029534|P16157-14|ANK1;REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.251220703125	3	434.250583	1299.72992	0.052294	2.2709E-05	0.62712	0.00027233	0.67942	0.00029504	434.25081534594966	59.062	0.49348	59.132	58.995	59.489	0.070477					34	19	2	0	0	0	0.40087	1	12980	12980		4.1166	0	1	228370	+		17766	9642;8008	11820	11935	23793	23793					0.09204439242853368
RRPFCRMH	8	Unmodified	_RRPFCRMH_					0	0	0		ENST00000409525.1_1_6:31638888-31639059:+|nuORF;ENST00000375864.4_1_6:31638624-31639059:+|nuORF	ENST00000409525.1_1_6:31638888-31639059:+|nuORF	ENST00000409525.1_1_6:31638888-31639059:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2505493164062	2	551.779105	1101.54366	0.18593	0.00010259	0.010011	5.5237E-06	0.19594	0.00010812	551.7781869987645	22.861	0.24362	22.963	22.835	23.079	0.10178					45	20	3	0	0	0	0.54199	1	2137	2137		0	0	1	17960			17767	6243	11821	11936	23794	23794					-0.0030535967828200228
RRPHSVLRRHQ	11	Unmodified	_RRPHSVLRRHQ_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.283447265625	3	481.283503	1440.82868	0.21359	0.0001028	0.058648	2.8226E-05	0.27224	0.00013102	481.2834553790044	96.832	2.3611	96.872	96.005	98.366	0.039772					283	122	4	0	0	0	0.41405	2	24609	24522;24609		1.1098	0.65524	1	823200	+		17768	9411	11822	11937	23795;23796	23796					0.1258990005112537
RRPPLRRRRVL	11	Unmodified	_RRPPLRRRRVL_					0	0	0		ENST00000357060.7_2_10:105990583-105992116:-|nuORF	ENST00000357060.7_2_10:105990583-105992116:-|nuORF	ENST00000357060.7_2_10:105990583-105992116:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.32696533203125	3	492.327043	1473.9593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.78	1	113.8	113.3	114.3	0.013336								0	0	0	0.34212	1	29003	29003		0	0	1				17769	6127	11823	11938	23797	23797					0.24127915769940955
RRPPPLAH	8	Unmodified	_RRPPPLAH_					0	0	0			REV__ENST00000440114.1_1_2:198362106-198364543:-|nuORF	REV__ENST00000440114.1_1_2:198362106-198364543:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.283447265625	2	472.28286	942.551168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.188	1	96.188	95.688	96.688	0								0	0	0	0.38822	1	24387	24387		2.8892	0.31174	1		+		17770	11882	11824	11939	23798	23798					0.07759439185258543
RRPRPREL	8	Unmodified	_RRPRPREL_					0	0	0		ENST00000553142.5_1_12:58021477-58021885:-|nuORF	ENST00000553142.5_1_12:58021477-58021885:-|nuORF	ENST00000553142.5_1_12:58021477-58021885:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3302612304688	2	540.330873	1078.64719	0.44115	0.00023837	-0.90768	-0.00049045	-0.46653	-0.00025208	540.3301972152394	82.674	1.0316	82.696	82.069	83.1	0.021744					89	36	3	0	0	0	0.53817	1	20194	20194		2.5775	0	1	478470			17771	7112	11825	11940	23799	23799					0.1110158702535955
RRPSQGGRYEC	11	Unmodified	_RRPSQGGRYEC_					0	0	0			REV__ENST00000409331.6_1_2:85590275-85596871:+|nuORF	REV__ENST00000409331.6_1_2:85590275-85596871:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.8787536621094	3	436.879044	1307.6153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.052	1	26.052	25.552	26.552	0								0	0	0	0.34212	1	3152	3152		0	0	1		+		17772	11773	11826	11941	23800	23800					-0.02620193510711033
RRPWRIWF	8	Unmodified	_RRPWRIWF_					0	0	0		ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.2326354980469	3	406.233198	1215.67777	-0.15876	-6.4493E-05	-1.7722	-0.00071995	-1.931	-0.00078444	406.23246741334566	45.024	0.43312	45.112	44.964	45.397	0.087543					23	16	2	0	0	0	0.3576	1	8686	8686		1.8442	0	1	85332			17773	5546	11827	11942	23801	23801					0.07855365410409831
RRQIRGRKAQ	10	Unmodified	_RRQIRGRKAQ_					0	0	0			REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF	REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8931884765625	2	634.892161	1267.76977	0.42067	0.00026708	1.3113	0.00083255	1.732	0.0010996	634.8927054282128	101.34	0.66731	101.38	101.1	101.77	0.042656					83	42	3	0	0	0	0.47199	1	25840	25840		1.4819	0	1	252950	+		17774	11314	11828	11943	23802	23802					0.14659423756802425
RRQMYIQD	8	Unmodified	_RRQMYIQD_					0	0	0		ENST00000526620.5_1_11:118081332-118083197:-|nuORF	ENST00000526620.5_1_11:118081332-118083197:-|nuORF	ENST00000526620.5_1_11:118081332-118083197:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.747802734375	2	555.279657	1108.54476	0.69396	0.00038534	-4.1231	-0.0022895	-3.4291	-0.0019041	555.2775104962363	97.376	0.18069	97.376	97.258	97.438	0					12	6	3	0	0	0	0.3576	1	24761	24761		2.3027	0	1	46475			17775	6995	11829	11944	23803	23803					-0.005168668284113664
RRQPLTTHSN	10	Unmodified	_RRQPLTTHSN_					0	0	0			REV__nc|ENSG00000160208|Q14684-2|RRP1B	REV__nc|ENSG00000160208|Q14684-2|RRP1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.8944396972656	3	403.886415	1208.63742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.499	1	28.582	28.082	29.082	0.082134								0	0	0	0.33905	1	3731	3731		0.56317	0	1		+		17776	9842	11830	11945	23804	23804					0.0414435422931092
RRQRARYRP	9	Unmodified	_RRQRARYRP_					0	0	0			REV__ENSG00000187486|ENST00000339994|KCNJ11	REV__ENSG00000187486|ENST00000339994|KCNJ11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.8715209960938	2	629.871228	1257.7279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.04	1	36.122	35.622	36.622	0.081715								0	0	0	0.2927	1	5978	5978		0.52476	0.12405	1		+		17777	10733	11831	11946	23805	23805					0.10934868068261494
RRQRSLLYR	9	Unmodified	_RRQRSLLYR_					0	0	0			REV__BSN|p.R2601Q|1|0.29|ENSG00000164061|chr3:49657358-49657358|G/A|missense_variant	REV__BSN|p.R2601Q|1|0.29|ENSG00000164061|chr3:49657358-49657358|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.378173828125	2	624.375812	1246.73707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.64	1	104.67	104.17	105.17	0.034004								0	0	0	0.2927	1	26756	26756		0.52476	0.12405	1		+		17778	7743	11832	11947	23806	23806					0.12357216633949974
RRQTRVIQTGR	11	Unmodified	_RRQTRVIQTGR_					0	0	0		UBR5|p.R162Q|1|0.24|ENSG00000104517|chr8:102346994-102346994|C/T|missense_variant	UBR5|p.R162Q|1|0.24|ENSG00000104517|chr8:102346994-102346994|C/T|missense_variant	UBR5|p.R162Q|1|0.24|ENSG00000104517|chr8:102346994-102346994|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.60772705078125	3	457.607764	1369.80146	0.67482	0.0003088	0.46964	0.00021491	1.1445	0.00052372	457.60781129591237	92.505	1.5347	92.505	91.927	93.462	0					141	58	3	0	0	0	0.41693	1	23201	23201		0.45452	0	1	222480			17779	13760	11833	11948	23807	23807					0.13135371720068179
RRQTRVIQTGR	11	Unmodified	_RRQTRVIQTGR_					0	0	0		UBR5|p.R162Q|1|0.24|ENSG00000104517|chr8:102346994-102346994|C/T|missense_variant	UBR5|p.R162Q|1|0.24|ENSG00000104517|chr8:102346994-102346994|C/T|missense_variant	UBR5|p.R162Q|1|0.24|ENSG00000104517|chr8:102346994-102346994|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.6081237792969	3	457.607764	1369.80146	0.41154	0.00018832	0.65291	0.00029877	1.0644	0.0004871	457.6079924139184	92.397	1.3582	92.434	91.911	93.27	0.03653					113	51	3	0	0	0	0.41693	1	23020	23020		0.45452	0	1	222900			17780	13760	11833	11948	23808	23808					0.13135371720068179
RRQVLSQRRP	10	Unmodified	_RRQVLSQRRP_					0	0	0			REV__ENST00000397843.6_2_11:120278496-120291479:+|nuORF	REV__ENST00000397843.6_2_11:120278496-120291479:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3926391601562	2	648.391993	1294.76943	0.2787	0.00018071	1.4914	0.000967	1.7701	0.0011477	648.3929883286829	102.68	0.50926	102.72	102.52	103.03	0.040916					72	39	2	0	0	0	0.47232	1	26211	26211		1.3295	1.0605	1	121780	+		17781	11736	11834	11949	23809	23809					0.13384004036925035
RRRALRRRQPP	11	Unmodified	_RRRALRRRQPP_					0	0	0			REV__ENST00000393606.7_1_17:42294008-42297052:-|nuORF	REV__ENST00000393606.7_1_17:42294008-42297052:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.9747009277344	3	487.974781	1460.90251	-0.15179	-7.4068E-05	0.20932	0.00010214	0.057537	2.8077E-05	487.97483272430645	106.46	0.37321	106.46	106.29	106.66	0					85	36	3	0	0	0	0.4185	1	27479	27479		0.094841	0	1	159250	+		17782	11704	11835	11950	23810	23810					0.19049868213437549
RRRCHGVNN	9	Unmodified	_RRRCHGVNN_					0	0	0			REV__ENSG00000178591|ENST00000382410|DEFB125	REV__ENSG00000178591|ENST00000382410|DEFB125	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2869873046875	2	556.28614	1110.55773	0.32458	0.00018056	0.060783	3.3813E-05	0.38536	0.00021437	556.2862649488999	21.482	0.2332	21.584	21.507	21.74	0.10178					30	22	2	0	0	0	0.35102	1	1763	1763		0	0	1	19665	+		17783	10457	11836	11951	23811	23811					0.006870090743632318
RRRDQFPL	8	Unmodified	_RRRDQFPL_					0	0	0		SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG	SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.795166015625	2	544.309606	1086.60466	-0.10239	-5.5732E-05	2.221	0.0012089	2.1186	0.0011532	544.310704267727	40.503	0.49263	40.593	40.409	40.902	0.089642					25	19	2	0	0	0	0.3576	1	7280	7280		8.5933	2.8614	1	39423			17784	783	11837	11952	23812	23812					0.06482191897134726
RRREIHEHKLR	11	Unmodified	_RRREIHEHKLR_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.6346740722656	3	510.634313	1528.88111	0.44069	0.00022503	0.050164	2.5616E-05	0.49086	0.00025065	510.6342866742304	96.885	0.59796	96.885	96.578	97.176	0					53	29	2	0	0	0	0.41892	1	24567	24567		0	0	1	266140	+		17785	9838	11838	11953	23813	23813					0.13782438394059682
RRREVCLE	8	Unmodified	_RRREVCLE_					0	0	0		ENST00000529307.1_1_11:34074563-34074728:+|nuORF	ENST00000529307.1_1_11:34074563-34074728:+|nuORF	ENST00000529307.1_1_11:34074563-34074728:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2908325195312	2	530.78765	1059.56075	0.23368	0.00012403	1.6916	0.00089789	1.9253	0.0010219	530.7881886863049	103.34	0.3196	103.34	103.11	103.43	0					37	21	2	0	0	0	0.53894	1	26559	26559		2.0598	0.40713	1	52701			17786	7016	11839	11954	23814	23814					0.03334839408466905
RRREVCLE	8	Unmodified	_RRREVCLE_					0	0	0		ENST00000529307.1_1_11:34074563-34074728:+|nuORF	ENST00000529307.1_1_11:34074563-34074728:+|nuORF	ENST00000529307.1_1_11:34074563-34074728:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7884521484375	2	530.78765	1059.56075	0.46684	0.00024779	1.1971	0.00063542	1.664	0.00088322	530.788096508973	103.33	0.33681	103.37	103.08	103.42	0.03791					44	34	2	0	0	0	0.53894	1	26359	26359		2.0598	0.40713	1	64306			17787	7016	11839	11954	23815	23815					0.03334839408466905
RRRKKKKKH	9	Unmodified	_RRRKKKKKH_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.9313354492188	2	632.931089	1263.84762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.769	1	52.837	52.337	53.337	0.067173								0	0	0	0.29525	1	11019	11019		0	0	1				17788	3751	11840	11955	23816	23816					0.2262548141281968
RRRQGPPP	8	Unmodified	_RRRQGPPP_					0	0	0			REV__ENST00000215832.10_1_22:22221790-22221904:-|nuORF	REV__ENST00000215832.10_1_22:22221790-22221904:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2843017578125	2	482.283392	962.552231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.775	1	28.853	28.353	29.353	0.078287								0	0	0	0.38822	1	3813	3813		0.79363	0	1		+		17789	11169	11841	11956	23817	23817					0.06945653554180353
RRRQRLLF	8	Unmodified	_RRRQRLLF_					0	0	0			REV__ENST00000483151.5_1_6:33259881-33261471:-|nuORF	REV__ENST00000483151.5_1_6:33259881-33261471:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8643188476562	2	572.862341	1143.71013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.321	1	14.321	13.821	14.821	0								0	0	0	0.38822	1	353	353		0.69038	0	1		+		17790	11053	11842	11957	23818	23818					0.14402152813408975
RRRQRPVSLN	10	Unmodified	_RRRQRPVSLN_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3848266601562	2	641.384168	1280.75378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.441	1	97.441	96.941	97.941	0								0	0	0	0.33984	1	24769	24769		0.40072	0	1		+		17791	10251	11843	11958	23819	23819					0.12463717519904094
RRRQRRRFSP	10	Unmodified	_RRRQRRRFSP_					0	0	0		ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2835388183594	3	472.283615	1413.82901	-0.017029	-8.0423E-06	0.29014	0.00013703	0.27311	0.00012899	472.28372926122665	95.481	2.0351	95.52	94.766	96.801	0.038864					172	98	3	0	0	0	0.47446	2	24216	24216;24260		0.15932	0.15932	1	610880			17792	6213	11844	11959	23820;23821	23820					0.13865319770957285
RRRRLWRWWW	10	Unmodified	_RRRRLWRWWW_					0	0	0		chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2506713867188	3	552.979755	1655.91744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.233	1	22.233	21.733	22.733	0								0	0	0	0.34018	1	2071	2071		0	0	1				17793	148	11845	11960	23822	23822					0.1157136008141606
RRRRLWRWWW	10	Unmodified	_RRRRLWRWWW_					0	0	0		chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2992553710938	3	552.979755	1655.91744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.308	1	17.391	16.891	17.891	0.083696								0	0	0	0.34018	1	828	828		0	0	1				17794	148	11845	11960	23823	23823					0.1157136008141606
RRRRRRCRRS	10	Unmodified	_RRRRRRCRRS_					0	0	0			REV__ENST00000550735.6_1_12:112280040-112280175:+|nuORF	REV__ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.6276550292969	3	486.627498	1456.86067	0.088261	4.295E-05	-0.31976	-0.0001556	-0.2315	-0.00011265	486.9617566537487	102.25	0.8049	102.25	101.98	102.79	0					151	56	5	0	0	0	0.47456	1	26176	26176		0.13989	0	1	452060	+		17795	12435	11846	11961	23824	23824					0.150509892532682
RRRRRVISAF	10	Unmodified	_RRRRRVISAF_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|74|2|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|50|2|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|74|2|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|74|2|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.2187805175781	3	439.609328	1315.80615	0.098835	4.3449E-05	-2.1977	-0.00096612	-2.0988	-0.00092267	439.9427558670953	91.372	0.27795	91.408	91.334	91.612	0.035439					13	9	2	0	0	0	0.31856	1	22784	22784		0.15932	0.01943	1	73137			17796	7393	11847	11962	23825	23825					0.16088300653495935
RRRRRVISAF	10	Unmodified	_RRRRRVISAF_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|74|2|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|50|2|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|74|2|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|74|2|sense	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	439.609328	1315.80615	0.50868	0.00022362	-1.8277	-0.00080349	-1.3191	-0.00057987	439.60862446434203	91.118	0.088509	91.118	91.063	91.152	0	-0.14479	0.00028099	NaN	0.15932	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47547			17797	7393	11847	11962							0.16088300653495935
RRRRSRKWR	9	Unmodified	_RRRRSRKWR_					0	0	0		ENST00000403909.2_1_6:139660476-139660551:+|nuORF	ENST00000403909.2_1_6:139660476-139660551:+|nuORF	ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.9483337402344	3	452.948455	1355.82354	0.28012	0.00012688	-0.29368	-0.00013302	-0.013559	-6.1415E-06	452.94815530431157	104.02	0.69669	104.02	103.73	104.42	0					171	68	4	0	0	0	0.34898	1	26716	26716		0.26902	0	1	454110			17798	6372	11848	11963	23826	23826					0.1598564097914732
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3197021484375	3	539.984228	1616.93085	0.57203	0.00030889	1.1972	0.00064645	1.7692	0.00095534	539.9846635279074	102.07	0.85634	102.12	101.82	102.67	0.042656					124	67	3	0	0	0	0.41892	2	26039	26039;26083		0	0	1	163250	+		17799	10384	11849	11964	23827;23828	23827					0.147065661227316
RRRRTRRA	8	Unmodified	_RRRRTRRA_					0	0	0			REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF	REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3585205078125	2	564.358288	1126.70202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.81	1	113.82	113.32	114.32	0.013336								0	0	0	0.38822	1	29008	29008		0.6015	0	1		+		17800	12205	11850	11965	23829	23829					0.14374018616649664
RRRTKTPHTF	10	Unmodified	_RRRTKTPHTF_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.2547607421875	3	433.917938	1298.73199	0.63408	0.00027514	-1.2098	-0.00052498	-0.57576	-0.00024983	434.2519365609611	99.516	0.15985	99.516	99.379	99.539	0					13	8	2	0	0	0	0.31853	1	25391	25391		0.62683	0	1	360770			17801	873	11851	11966	23830	23830					0.09456912771292991
RRRVSLCHP	9	Unmodified	_RRRVSLCHP_					0	0	0		ENST00000316082.4_1_17:40174608-40175085:+|nuORF	ENST00000316082.4_1_17:40174608-40175085:+|nuORF	ENST00000316082.4_1_17:40174608-40175085:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7947387695312	2	562.316909	1122.61926	0.14574	8.195E-05	-1.1064	-0.00062216	-0.96069	-0.00054021	562.3165499645285	39.623	0.17535	39.712	39.662	39.837	0.088562					6	5	2	0	0	0	0.25981	1	7069	7069		0.6015	0	1	12126			17802	6018	11852	11967	23831	23831					0.06285940773636867
RRRYKCDEC	9	Unmodified	_RRRYKCDEC_					0	0	0		ENSG00000196812|ENST00000340487|ZSCAN16	ENSG00000196812|ENST00000340487|ZSCAN16	ENSG00000196812|ENST00000340487|ZSCAN16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7875366210938	2	614.787324	1227.56009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.61	1	18.699	18.199	19.199	0.089705								0	0	0	0.2927	1	1086	1086		0.52476	0.12405	1				17803	5249	11853	11968	23832	23832					-0.04458323302856115
RRSAPKGRKT	10	Unmodified	_RRSAPKGRKT_					0	0	0		ENSG00000239697|ENST00000293825|TNFSF12;nc|ENSG00000239697|O43508-2|TNFSF12	ENSG00000239697|ENST00000293825|TNFSF12	ENSG00000239697|ENST00000293825|TNFSF12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8535766601562	2	578.854712	1155.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.42	1	112.43	111.93	112.93	0.014595								0	0	0	0.33905	1	28677	28677		1.3295	0.63916	1				17804	5641	11854	11969	23833	23833					0.12325241225562422
RRSLMGPFP	9	Unmodified	_RRSLMGPFP_					0	0	0		ENST00000595531.5_1_2:105883140-105883392:-|nuORF	ENST00000595531.5_1_2:105883140-105883392:-|nuORF	ENST00000595531.5_1_2:105883140-105883392:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7883911132812	2	530.789661	1059.56477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.39	1	103.43	102.93	103.93	0.03791								0	0	0	0.28631	1	26405	26405		1.8442	0.19162	1				17805	7285	11855	11970	23834	23834					0.03736928902185355
RRSQAFLHFV	10	Unmodified	_RRSQAFLHFV_					0	0	0		ENST00000359139.7_1_22:50882795-50883161:+|nuORF	ENST00000359139.7_1_22:50882795-50883161:+|nuORF	ENST00000359139.7_1_22:50882795-50883161:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.21685791015625	3	420.903518	1259.68872	-0.081628	-3.4357E-05	-0.63962	-0.00026922	-0.72125	-0.00030358	420.90310245147214	46.263	0.2062	46.348	46.187	46.393	0.085617					9	6	2	0	0	0	0.31833	1	9020	9020		2.086	0	1	22692			17806	6143	11856	11971	23835	23835					0.0692672299401238
RRSRAHKWVA	10	Unmodified	_RRSRAHKWVA_					0	0	0			REV__ENST00000298292.12_1_14:50100267-50100483:-|nuORF	REV__ENST00000298292.12_1_14:50100267-50100483:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8699340820312	2	633.868154	1265.72176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.959	1	93.997	93.497	94.497	0.038086								0	0	0	0.33738	1	23550	23550		3.2813	0	1		+		17807	11335	11857	11972	23836	23836					0.09952349836748908
RRTKAPPG	8	Unmodified	_RRTKAPPG_					0	0	0			REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.76751708984375	2	441.767043	881.519533	0.6793	0.00030009	0.78924	0.00034866	1.4685	0.00064875	441.76732691296814	92.303	0.44366	92.303	92.088	92.531	0					20	16	2	0	0	0	0.53858	1	23197	23197		2.3027	2.3027	1	177990	+		17808	10626	11858	11973	23837	23837					0.07403446431317207
RRTKAPPG	8	Unmodified	_RRTKAPPG_					0	0	0			REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	441.767043	881.519533	0.6793	0.00030009	0.78924	0.00034866	1.4685	0.00064875	441.76732691296814	92.303	0.44366	92.303	92.088	92.531	0	-0.013277	-0.00027783	NaN	2.3027	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177990	+		17809	10626	11858	11973							0.07403446431317207
RRTKAPPG	8	Unmodified	_RRTKAPPG_					0	0	0			REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	441.767043	881.519533	0.35991	0.000159	1.2621	0.00055756	1.622	0.00071656	441.7675266425974	92.294	0.73463	92.33	92.128	92.863	0.036522	0.013277	0.00013997	NaN	2.3027	30	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81911	+		17810	10626	11858	11973							0.07403446431317207
RRTKNALIR	9	Unmodified	_RRTKNALIR_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-2|BCL9L	REV__nc|ENSG00000186174|Q86UU0-2|BCL9L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.359375	2	564.359631	1126.70471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.309	1	43.309	42.809	43.809	0								0	0	0	0.2927	1	8292	8292		0.52476	0	1		+		17811	12862	11859	11974	23838	23838					0.14642429230934795
RRTLKFSRS	9	Unmodified	_RRTLKFSRS_					0	0	0		ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.843017578125	2	575.843813	1149.67307	0.29197	0.00016813	-0.933	-0.00053726	-0.64103	-0.00036913	575.8431195914848	83.637	1.1014	83.658	83.194	84.295	0.021744					85	39	3	0	0	0	0.33704	1	20456	20456		1.8442	0	1	337530			17812	4082	11860	11975	23839	23839					0.10422436476983421
RRTLLLKI	8	Unmodified	_RRTLLLKI_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.85302734375	2	506.853119	1011.69168	-0.12201	-6.184E-05	-0.13344	-6.7634E-05	-0.25545	-0.00012947	506.85295430011547	112.14	1.2356	112.14	111.92	113.16	0					352	141	4	0	0	0	0.54097	1	28853	28853		0.69038	0	1	8677500			17813	2876	11861	11976	23840	23840					0.18630598118829766
RRTYPCPPV	9	Unmodified	_RRTYPCPPV_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|107|2|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|107|2|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.787841796875	2	544.787118	1087.55968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.998	1	18.082	17.582	18.582	0.083696								0	0	0	0.29233	1	962	962		0.6015	0.076735	1		+		17814	12672	11862	11977	23841	23841					0.01940625039560473
RRVLQNLKGQ	10	Unmodified	_RRVLQNLKGQ_					0	0	0		ENSG00000196943|ENST00000267425|NOP9	ENSG00000196943|ENST00000267425|NOP9	ENSG00000196943|ENST00000267425|NOP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3707275390625	2	606.370195	1210.72584	0.68181	0.00041343	-1.9733	-0.0011966	-1.2915	-0.00078312	606.3697552155973	109.54	0.26399	109.56	109.36	109.63	0.019402					39	26	3	0	0	0	0.45794	1	28022	28022		3.2813	1.4371	1	2556800			17815	5257	11863	11978	23842	23842					0.12890394539772387
RRVLVKLV	8	Unmodified	_RRVLVKLV_					0	0	0			REV__ENST00000539111.6_1_17:62488863-62489078:-|nuORF	REV__ENST00000539111.6_1_17:62488863-62489078:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.8480529785156	2	491.847836	981.681119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113	1	113	112.5	113.5	0								0	0	0	0.38822	1	28962	28962		0	0	1		+		17816	12395	11864	11979	23843	23843					0.18954615464429025
RRVTPVFTF	9	Unmodified	_RRVTPVFTF_					0	0	0			REV__ENST00000511744.1_1_6:53976250-54068425:+|nuORF	REV__ENST00000511744.1_1_6:53976250-54068425:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2566528320312	2	561.824558	1121.63456	0.22256	0.00012504	2.7895	0.0015672	3.0121	0.0016923	562.3261441098814	52.836	0.083698	52.836	52.788	52.872	0					4	2	2	0	0	0	0.24263	1	11174	11174		12.532	3.9383	1	24911	+		17817	12257	11865	11980	23844	23844					0.07861130842456987
RRWHRRPRRPR	11	Unmodified	_RRWHRRPRRPR_					0	0	0		ENST00000527920.5_1_11:65339976-65340141:+|nuORF	ENST00000527920.5_1_11:65339976-65340141:+|nuORF	ENST00000527920.5_1_11:65339976-65340141:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.8902893066406	4	407.9978	1627.96209	0.58	0.00023664	-4.2189	-0.0017213	-3.6389	-0.0014847	407.99614029356553	55.937	0.28043	55.937	55.782	56.063	0					16	9	3	0	0	0	0.31101	1	12114	12114		0.08335	0.08335	1	76110			17818	7008	11866	11981	23845	23845					0.1732318394745107
RRWWGIAF	8	Unmodified	_RRWWGIAF_					0	0	0			REV__ENST00000419381.1_2_2:70409123-70410019:-|nuORF	REV__ENST00000419381.1_2_2:70409123-70410019:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2451171875	2	546.29851	1090.58247	0.22885	0.00012502	-2.4777	-0.0013535	-2.2488	-0.0012285	546.2971974384886	36.657	0.18299	36.657	36.568	36.751	0					8	6	2	0	0	0	0.3576	1	6305	6305		0.79363	0.19213	1	13308	+		17819	11252	11867	11982	23846	23846					0.04080012219378659
RRYKFMSR	8	Unmodified	_RRYKFMSR_					0	0	0		nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000151572|ENST00000392977|ANO4	nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000151572|Q32M45-2|ANO4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3134155273438	2	572.313835	1142.61312	-0.15296	-8.7542E-05	-0.90198	-0.00051622	-1.0549	-0.00060376	572.3135430162858	30.219	0.36544	30.219	30.055	30.42	0					23	17	2	0	0	0	0.5411	1	4404	4404		0.6015	0.076735	1	19205			17820	3465	11868	11983	23847	23847					0.0475142254210823
RRYRFRYS	8	Unmodified	_RRYRFRYS_					0	0	0			REV__ENSG00000142408|ENST00000270458|CACNG8	REV__ENSG00000142408|ENST00000270458|CACNG8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8778991699219	3	401.887979	1202.64211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.419	1	23.419	22.919	23.919	0								0	0	0	0.38822	1	2403	2403		0.40072	0.16487	1		+		17821	9430	11869	11984	23848	23848					0.04889283162742686
RSATWFKRQFF	11	Unmodified	_RSATWFKRQFF_					0	0	0			REV__ENSG00000157445|ENST00000474759|CACNA2D3	REV__ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.9296569824219	3	491.929844	1472.7677	0.44399	0.00021841	-0.76816	-0.00037788	-0.32417	-0.00015947	491.9293367341193	53.704	0.45594	53.77	53.466	53.922	0.06543					30	20	2	0	0	0	0.40316	1	11281	11281		3.5927	0.96144	1	109960	+		17822	9777	11870	11985	23849	23849					0.05022950228294576
RSATWFKRQFF	11	Unmodified	_RSATWFKRQFF_					0	0	0			REV__ENSG00000157445|ENST00000474759|CACNA2D3	REV__ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	491.929844	1472.7677	0.42865	0.00021086	-0.72385	-0.00035608	-0.2952	-0.00014522	491.92955641386044	53.69	0.39796	53.69	53.469	53.867	0	-0.039786	3.606E-05	NaN	3.5927	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76885	+		17823	9777	11870	11985							0.05022950228294576
RSATWFKRQFF	11	Unmodified	_RSATWFKRQFF_					0	0	0			REV__ENSG00000157445|ENST00000474759|CACNA2D3	REV__ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	491.929844	1472.7677	0.44399	0.00021841	-0.76816	-0.00037788	-0.32417	-0.00015947	491.9293367341193	53.704	0.45594	53.77	53.466	53.922	0.06543	0.039786	-2.9329E-05	NaN	3.5927	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109960	+		17824	9777	11870	11985							0.05022950228294576
RSAYQEAM	8	Unmodified	_RSAYQEAM_					0	0	0		nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2185363769531	2	478.218734	954.422915	-0.40116	-0.00019184	0.073729	3.5259E-05	-0.32744	-0.00015659	478.2186958550197	28.751	1.0329	28.751	28.529	29.562	0					105	56	3	0	0	0	0.53557	2	4027	4027;4066		4.3292	0	1	344420			17825	4639	11871	11986	23850;23851	23850					-0.056119089107937725
RSDLPESDGIE	11	Unmodified	_RSDLPESDGIE_					0	0	0			REV__ENSG00000179057|ENST00000513874|IGSF22	REV__ENSG00000179057|ENST00000513874|IGSF22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.8506469726562	2	609.285857	1216.55716	0.71294	0.00043438	-1.3379	-0.00081518	-0.62499	-0.0003808	609.7866487772387	65.294	0.23379	65.294	65.165	65.398	0					9	7	2	0	0	0	0.29445	1	14996	14996		21.537	9.2963	1	83897	+		17826	10472	11872	11987	23852	23852					-0.042455966750367224
RSFEISQYI	9	Unmodified	_RSFEISQYI_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3131713867188	2	571.795663	1141.57677	0.41969	0.00023998	2.0355	0.0011639	2.4552	0.0014039	571.7965830801579	83.239	0.34953	83.239	83.051	83.401	0					16	11	2	0	0	0	0.11547	1	20452	20452		29.082	10.935	1	41717	+		17827	8596	11873	11988	23853	23853					0.011648241264083481
RSFEISQYI	9	Unmodified	_RSFEISQYI_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3136596679688	2	571.795663	1141.57677	0.41969	0.00023998	2.0355	0.0011639	2.4552	0.0014039	571.7965830801579	83.239	0.34953	83.239	83.051	83.401	0					16	11	2	0	0	0	0.14331	1	20496	20496		36.127	12.106	1	41717	+		17828	8596	11873	11988	23854	23854					0.011648241264083481
RSFGPAPDS	9	Unmodified	_RSFGPAPDS_					0	0	0		KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;ENSG00000130487|ENST00000648057|KLHDC7B	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2259521484375	2	467.224874	932.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.744	1	90.744	90.244	91.244	0								0	0	0	0.28631	1	22730	22730		1.8442	0	1				17829	7373	11874	11989	23855	23855					-0.03372549176094708
RSFHSYFPW	9	Unmodified	_RSFHSYFPW_					0	0	0		ENST00000398844.6_1_5:134033736-134039485:+|nuORF	ENST00000398844.6_1_5:134033736-134039485:+|nuORF	ENST00000398844.6_1_5:134033736-134039485:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.5298156738281	3	409.529569	1225.56688	0.40242	0.0001648	0.44085	0.00018054	0.84327	0.00034534	409.5296409400285	80.153	0.74612	80.176	79.962	80.708	0.023605					59	26	3	0	0	0	0.33704	1	19412	19412		0.96228	0	1	624580			17830	6354	11875	11990	23856	23856					-0.03688319088360004
RSFPPSLFIR	10	Unmodified	_RSFPPSLFIR_					0	0	0			REV__ENST00000425712.1_1_7:156265258-156395789:-|nuORF	REV__ENST00000425712.1_1_7:156265258-156395789:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.2362060546875	3	407.236385	1218.68733	0.050908	2.0732E-05	-0.2101	-8.5562E-05	-0.15919	-6.483E-05	407.570635422992	60.844	0.61333	60.918	60.774	61.388	0.073418					42	20	3	0	0	0	0.43806	1	13489	13489		7.0371	1.6344	1	152060	+		17831	11830	11876	11991	23857	23857					0.08673088905266013
RSFPPSLFIR	10	Unmodified	_RSFPPSLFIR_					0	0	0			REV__ENST00000425712.1_1_7:156265258-156395789:-|nuORF	REV__ENST00000425712.1_1_7:156265258-156395789:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	407.236385	1218.68733	0.5891	0.0002399	-0.67177	-0.00027357	-0.082678	-3.367E-05	407.23603928901645	60.973	0.61307	60.973	60.805	61.418	0	0.027869	-0.00026209	NaN	7.0371	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138670	+		17832	11830	11876	11991							0.08673088905266013
RSFQLVSL	8	Unmodified	_RSFQLVSL_					0	0	0			REV__ENST00000470379.1_1_1:167400920-167408655:-|nuORF	REV__ENST00000470379.1_1_1:167400920-167408655:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2753601074219	2	475.276909	948.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.224	1	89.257	88.757	89.757	0.032257								0	0	0	0.38822	1	22108	22108		2.3027	0	1		+		17833	12028	11877	11992	23858	23858					0.06293777651421806
RSGYTTQF	8	Unmodified	_RSGYTTQF_					0	0	0			REV__nc|ENSG00000292366|P51809-2|VAMP7	REV__nc|ENSG00000292366|P51809-2|VAMP7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7423400878906	2	480.232699	958.450845	-0.1032	-4.9558E-05	0.090209	4.3322E-05	-0.012986	-6.2365E-06	480.2327658131634	35.689	0.30992	35.768	35.653	35.963	0.078827					13	11	2	0	0	0	0.3576	1	5928	5928		2.3027	0	1	23519	+		17834	12924	11878	11993	23859	23859					-0.03004262659055712
RSHALAAW	8	Unmodified	_RSHALAAW_					0	0	0			REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4	REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.2458801269531	2	456.245944	910.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.95	1	71.008	70.508	71.508	0.058578								0	0	0	0.38822	1	16541	16541		0.79363	0	1		+		17835	9889	11879	11994	23860	23860					0.018514710229283082
RSLLHFHPLK	10	Unmodified	_RSLLHFHPLK_					0	0	0			REV__ENST00000382387.3_1_9:214570-214894:-|nuORF	REV__ENST00000382387.3_1_9:214570-214894:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.875	2	624.372207	1246.72986	-0.073608	-4.5959E-05	0.94491	0.00058998	0.8713	0.00054402	624.3725988913737	103.54	0.28925	103.54	103.43	103.72	0					45	31	2	0	0	0	0.31838	1	26597	26597		1.4819	0	1	140060	+		17836	11676	11880	11995	23861	23861					0.11636484033510897
RSMLMTACDL	10	Carbamidomethyl (C),Oxidation (M)	_RSMLM(Oxidation (M))TAC(Carbamidomethyl (C))DL_	RSMLMTAC(1)DL	RSMLM(1)TACDL	RSMLMTAC(50)DL	RSM(-41)LM(41)TACDL	0	1	1		ENST00000478646.5_1_2:178494137-178540272:-|nuORF;nc|ENSG00000128655|Q9HCR9-4|PDE11A;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A	ENST00000478646.5_1_2:178494137-178540272:-|nuORF	ENST00000478646.5_1_2:178494137-178540272:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2727661132812	2	607.272326	1212.5301	1.0442	0.00063414	-1.315	-0.00079856	-0.27074	-0.00016441	607.2717323699579	85.235	0.48386	85.258	85.063	85.547	0.023132					29	20	2	0	0	0	0.07941	1	20894	20894		49.554	13.427	2	263160			17837	2407	11881	11996	23862	23862	8	152			-0.06766443083074591
RSMLPHSSF	9	Unmodified	_RSMLPHSSF_					0	0	0		ENST00000235382.6_1_1:192781079-192781220:+|nuORF	ENST00000235382.6_1_1:192781079-192781220:+|nuORF	ENST00000235382.6_1_1:192781079-192781220:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2491455078125	2	531.263476	1060.5124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.274	1	68.274	67.774	68.774	0								0	0	0	0.19239	1	15882	15882		19.257	3.1079	1				17838	5821	11882	11997	23863	23863					-0.015436542314091639
RSMNISNLE	9	Unmodified	_RSMNISNLE_					0	0	0			REV__nc|ENSG00000010017|Q96S59-2|RANBP9	REV__nc|ENSG00000010017|Q96S59-2|RANBP9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7907104492188	2	532.263673	1062.51279	0.25689	0.00013673	1.5347	0.00081685	1.7916	0.00095358	532.2640760252655	49.191	0.48059	49.268	49.056	49.536	0.076607					27	17	3	0	0	0	0.15403	1	9876	9876		34.402	3.7652	1	162670	+		17839	7968	11883	11998	23864	23864					-0.015962793022026744
RSNDAYAL	8	Unmodified	_RSNDAYAL_					0	0	0			REV__ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	REV__ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.22509765625	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.32	1	102.36	101.86	102.86	0.040916								0	0	0	0.38822	1	26088	26088		0.79363	0	1		+		17840	7730	11884	11999	23865	23865					-0.022685491760967125
RSNLNRHSM	9	Unmodified	_RSNLNRHSM_					0	0	0		ENSG00000186026|ENST00000421176|ZNF284	ENSG00000186026|ENST00000421176|ZNF284	ENSG00000186026|ENST00000421176|ZNF284	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7800903320312	2	557.780356	1113.54616	0.2968	0.00016555	-1.5997	-0.0008923	-1.3029	-0.00072675	557.7799624331745	51.89	1.8734	51.89	51.239	53.113	0					206	65	5	0	0	0	0.25979	1	10950	10950		11.64	0	1	2896500			17841	5063	11885	12000	23866	23866					-0.006072327396395849
RSNLNRHSM	9	Unmodified	_RSNLNRHSM_					0	0	0		ENSG00000186026|ENST00000421176|ZNF284	ENSG00000186026|ENST00000421176|ZNF284	ENSG00000186026|ENST00000421176|ZNF284	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7811889648438	2	557.780356	1113.54616	0.47244	0.00026352	-1.455	-0.00081158	-0.98257	-0.00054806	557.7799490639568	51.812	1.8176	51.879	51.333	53.151	0.067173					185	71	5	0	0	0	0.27332	1	10879	10879		10.074	0.6908	1	2527700			17842	5063	11885	12000	23867	23867					-0.006072327396395849
RSNTISKPYI	10	Unmodified	_RSNTISKPYI_					0	0	0		ENST00000474975.1_1_2:165578500-165579000:-|nuORF;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENST00000474975.1_1_2:165578500-165579000:-|nuORF	ENST00000474975.1_1_2:165578500-165579000:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.255615234375	2	589.830037	1177.64552	0.37374	0.00022044	-0.1712	-0.00010098	0.20254	0.00011946	589.8298000985939	49.618	0.30384	49.695	49.568	49.871	0.076603					17	10	2	0	0	0	0.31841	1	10038	10038		1.3295	0	1	70600			17843	920	11886	12001	23868	23868					0.06380488426111697
RSPPTQVAI	9	Unmodified	_RSPPTQVAI_					0	0	0		nc|ENSG00000188549|Q6ZUT6-3|CCDC9B;ENST00000558912.1_1_15:40629487-40631275:-|nuORF;ENST00000382688.8_1_15:40627361-40631125:-|nuORF;nc|ENSG00000188549|Q6ZUT6-4|CCDC9B;ENSG00000188549|ENST00000397536|CCDC9B;nc|ENSG00000188549|Q6ZUT6|CCDC9B	nc|ENSG00000188549|Q6ZUT6-3|CCDC9B	nc|ENSG00000188549|Q6ZUT6-3|CCDC9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7797546386719	2	484.779816	967.545079	-0.43283	-0.00020983	0.19577	9.4907E-05	-0.23705	-0.00011492	484.7798463560525	40.2	0.45217	40.2	39.982	40.434	0					28	15	3	0	0	0	0.30757	1	7338	7338		5.7319	0	1	77656			17844	5160	11887	12002	23869	23869					0.06000876163091107
RSPPTQVAI	9	Unmodified	_RSPPTQVAI_					0	0	0		nc|ENSG00000188549|Q6ZUT6-3|CCDC9B;ENST00000558912.1_1_15:40629487-40631275:-|nuORF;ENST00000382688.8_1_15:40627361-40631125:-|nuORF;nc|ENSG00000188549|Q6ZUT6-4|CCDC9B;ENSG00000188549|ENST00000397536|CCDC9B;nc|ENSG00000188549|Q6ZUT6|CCDC9B	nc|ENSG00000188549|Q6ZUT6-3|CCDC9B	nc|ENSG00000188549|Q6ZUT6-3|CCDC9B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.779816	967.545079	-0.43283	-0.00020983	0.19577	9.4907E-05	-0.23705	-0.00011492	484.7798463560525	40.2	0.45217	40.2	39.982	40.434	0	0.021208	7.9572E-05	NaN	5.7319	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77656			17845	5160	11887	12002							0.06000876163091107
RSRAPVLSRQR	11	Unmodified	_RSRAPVLSRQR_					0	0	0		ENST00000592467.1_1_19:1261169-1261487:+|nuORF	ENST00000592467.1_1_19:1261169-1261487:+|nuORF	ENST00000592467.1_1_19:1261169-1261487:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.60101318359375	3	442.600609	1324.78	0.4234	0.0001874	0.89803	0.00039747	1.3214	0.00058487	442.60091325524456	98.386	0.6369	98.428	98.168	98.805	0.041939					85	33	3	0	0	0	0.41405	1	24922	24922		1.1098	0.48293	1	375050			17846	7269	11888	12003	23870	23870					0.13059986691337144
RSREASWNTSY	11	Unmodified	_RSREASWNTSY_					0	0	0			REV__nc|ENSG00000099250|O14786-3|NRP1	REV__nc|ENSG00000099250|O14786-3|NRP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.8696594238281	3	452.881219	1355.62183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.06	1	101.11	100.61	101.61	0.042839								0	0	0	0.34083	1	25715	25715		0.45452	0	1		+		17847	8354	11889	12004	23871	23871					-0.04175977078375581
RSRPLRPSF	9	Unmodified	_RSRPLRPSF_					0	0	0		ENST00000389561.6_1_12:132551999-132562003:+|nuORF	ENST00000389561.6_1_12:132551999-132562003:+|nuORF	ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3245849609375	2	558.325257	1114.63596	0.53335	0.00029778	-1.2917	-0.00072116	-0.7583	-0.00042338	558.3245857435851	94.288	0.33545	94.288	94.063	94.399	0					24	15	2	0	0	0	0.3354	1	23815	23815		2.0598	0	1	94525			17848	6308	11890	12005	23872	23872					0.08322764931222082
RSRRRRVPQ	9	Unmodified	_RSRRRRVPQ_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8731079101562	2	605.871228	1209.7279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.511	1	94.549	94.049	95.049	0.038086								0	0	0	0.2927	1	23717	23717		0.52476	0	1		+		17849	9977	11891	12006	23873	23873					0.13142868068257485
RSSEKLVR	8	Unmodified	_RSSEKLVR_					0	0	0		nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7908020019531	2	487.790715	973.566878	0.18303	8.9282E-05	0.11386	5.5539E-05	0.29689	0.00014482	487.7906188742125	76.791	0.81459	76.791	76.298	77.112	0					48	28	2	0	0	0	0.53557	1	18472	18472		4.3292	0	1	201430			17850	2330	11892	12007	23874	23874					0.07903680911670108
RSSEKLVR	8	Unmodified	_RSSEKLVR_					0	0	0		nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7907409667969	2	487.790715	973.566878	0.2243	0.00010941	0.13584	6.6264E-05	0.36015	0.00017568	487.7906907049716	78.727	3.2748	78.727	77.685	80.959	0					178	113	3	0	0	0	0.53557	1	19158	19158		4.3292	0	1	978190			17851	2330	11892	12007	23875	23875					0.07903680911670108
RSSEKLVR	8	Unmodified	_RSSEKLVR_					0	0	0		nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7914123535156	2	487.790715	973.566878	0.22424	0.00010938	0.09416	4.593E-05	0.3184	0.00015531	487.79066666432016	76.857	0.8513	76.896	76.332	77.183	0.03923					53	30	2	0	0	0	0.53557	1	18242	18242		4.3292	0	1	269090			17852	2330	11892	12007	23876	23876					0.07903680911670108
RSSGRQQWQS	10	Unmodified	_RSSGRQQWQS_					0	0	0		ENST00000474013.1_1_7:99971734-99973868:+|nuORF;nc|ENSG00000085514|Q9UKJ1-4|PILRA;ENST00000484934.1_1_7:99971228-99972163:+|nuORF;nc|ENSG00000085514|Q9UKJ1-3|PILRA;nc|ENSG00000085514|Q9UKJ1-2|PILRA;ENSG00000085514|ENST00000198536|PILRA	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.8233947753906	3	407.202404	1218.58538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.727	1	60.8	60.3	61.3	0.073421								0	0	0	0.33762	1	13442	13442		1.4551	0.59074	1				17853	959	11893	12008	23877	23877					-0.015168091844316223
RSSINDKII	9	Unmodified	_RSSINDKII_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2;SREBF2|p.R341Q|1|0.18|ENSG00000198911|chr22:41873952-41873952|G/A|missense_variant;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3037109375	2	523.303655	1044.59276	0.50452	0.00026402	-0.077575	-4.0595E-05	0.42695	0.00022342	523.3035016016728	82.868	2.4206	82.868	81.98	84.401	0					302	93	5	0	0	0	0.3182	1	20150	20150		4.3292	0	1	3364900			17854	5429	11894	12009	23878	23878					0.07224530363305348
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3037719726562	2	523.303655	1044.59276	0.50452	0.00026402	-0.077575	-4.0595E-05	0.42695	0.00022342	523.3035016016728	82.868	2.4206	82.868	81.98	84.401	0					302	93	5	0	0	0	0.27332	9	20199	20199;20240;20283;20328;20380;20426;20477;20566;20656		10.074	10.074	1	3364900			17855	1951	11895	12010	23879;23880;23881;23882;23883;23884;23885;23886;23887	23879					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.303655	1044.59276	0.21754	0.00011384	0.27522	0.00014402	0.49276	0.00025786	523.3036921489829	82.816	2.4442	82.838	81.969	84.413	0.021744					340	93	4	0	0	0	0.27332	9	20064	20015;20064;20192;20234;20282;20365;20409;20451;20504		10.074	10.074	1	3939600			17856	1951	11895	12010	23888;23889;23890;23891;23892;23893;23894;23895;23896	23889					0.07224530363282611
RSSKRSLP	8	Unmodified	_RSSKRSLP_					0	0	0			REV__ENST00000398117.1_1_18:60794470-60795067:-|nuORF	REV__ENST00000398117.1_1_18:60794470-60795067:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7774658203125	2	465.777608	929.540663	0.16637	7.7492E-05	-0.24365	-0.00011349	-0.077282	-3.5996E-05	465.77743259428183	76.227	0.9752	76.266	76.047	77.022	0.039238					53	40	2	0	0	0	0.53494	1	18325	18325		4.756	0	1	949910	+		17857	11738	11896	12011	23897	23897					0.07307411740191583
RSSRGSIFTF	10	Unmodified	_RSSRGSIFTF_					0	0	0		SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7713012695312	2	579.306729	1156.59891	0.57046	0.00033047	3.1743	0.0018389	3.7448	0.0021694	579.3087748656513	86.096	0.26569	86.122	85.899	86.164	0.025169					17	9	2	0	0	0	0.30517	1	21127	21127		15.248	0	1	65166			17858	4949	11897	12012	23898	23898					0.02687048594816588
RSSRLRKTF	9	Unmodified	_RSSRLRKTF_					0	0	0			REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7926635742188	2	575.843813	1149.67307	0.23969	0.00013803	-1.3306	-0.00076622	-1.0909	-0.00062819	575.8429777597923	89.289	0.66825	89.322	88.934	89.603	0.032257					55	25	3	0	0	0	0.25699	1	22129	22129		3.5965	3.5965	1	270810	+		17859	12502	11898	12013	23899	23899					0.10422436476960684
RSSRLSLLS	9	Unmodified	_RSSRLSLLS_					0	0	0		ENST00000592422.5_1_17:43325341-43344591:+|nuORF	ENST00000592422.5_1_17:43325341-43344591:+|nuORF	ENST00000592422.5_1_17:43325341-43344591:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8045349121094	2	509.803823	1017.59309	0.53124	0.00027083	-0.055093	-2.8087E-05	0.47615	0.00024274	509.8037313893562	80.9	2.9942	80.923	80.075	83.069	0.023605					311	107	4	0	0	0	0.32112	1	19428	19428		3.9444	3.9444	1	2164500			17860	7268	11899	12014	23900	23900					0.08499950083148633
RSSRRRSANM	10	Unmodified	_RSSRRRSANM_					0	0	0		ENST00000485790.1_1_21:33073145-33104086:-|nuORF	ENST00000485790.1_1_21:33073145-33104086:-|nuORF	ENST00000485790.1_1_21:33073145-33104086:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3562622070312	2	610.823086	1219.63162	0.30791	0.00018808	-2.9135	-0.0017796	-2.6055	-0.0015915	611.3233734657592	89.048	0.083733	89.081	89.034	89.117	0.032257					4	2	2	0	0	0	0.31747	1	22045	22045		2.9952	0	1	31783			17861	6778	11900	12015	23901	23901					0.030589324460152056
RSTGKGIVEF	10	Unmodified	_RSTGKGIVEF_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3035888671875	2	547.303655	1092.59276	0.13854	7.5825E-05	0.18399	0.0001007	0.32253	0.00017652	547.3037914550882	34.712	0.4215	34.788	34.592	35.014	0.076244					33	18	3	0	0	0	0.46208	1	5591	5591		2.4985	0.84587	1	43951			17862	1961	11901	12016	23902	23902					0.050165303632638825
RSTGKGIVEF	10	Unmodified	_RSTGKGIVEF_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	547.303655	1092.59276	0.095853	5.246E-05	-0.21042	-0.00011516	-0.11457	-6.2702E-05	547.3034799842922	34.804	0.55329	34.804	34.595	35.148	0	0.0078052	-0.00023172	NaN	2.4985	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32119			17863	1961	11901	12016							0.050165303632638825
RSTGKGIVEF	10	Unmodified	_RSTGKGIVEF_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	547.303655	1092.59276	0.13854	7.5825E-05	0.18399	0.0001007	0.32253	0.00017652	547.3037914550882	34.712	0.4215	34.788	34.592	35.014	0.076244	-0.0078052	0.00019999	NaN	2.4985	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43951			17864	1961	11901	12016							0.050165303632638825
RSTQLFLVP	9	Unmodified	_RSTQLFLVP_					0	0	0			REV__ENST00000532642.5_1_1:44443592-44443676:+|nuORF	REV__ENST00000532642.5_1_1:44443592-44443676:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2632446289062	2	530.811116	1059.60768	0.54008	0.00028668	-1.6151	-0.00085734	-1.0751	-0.00057066	530.8104031466956	86.005	0.27521	86.031	85.841	86.117	0.025177					12	9	2	0	0	0	0.25875	1	21118	21118		1.8442	0	1	67998	+		17865	12364	11902	12017	23903	23903					0.0802602223127451
RSVEDLQWS	9	Unmodified	_RSVEDLQWS_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2733154296875	2	560.275095	1118.53564	0.064684	3.6241E-05	0.037871	2.1218E-05	0.10255	5.7459E-05	560.2749559975392	31.171	1.648	31.245	31.026	32.674	0.07378					164	82	2	0	0	0	0.31389	1	4944	4944		4.897	0	1	71759			17866	1471	11903	12018	23904	23904					-0.01888936913087491
RSVEPGQTSSM	11	Unmodified	_RSVEPGQTSSM_					0	0	0			REV__ENST00000596243.5_1_19:50382564-50382609:+|nuORF	REV__ENST00000596243.5_1_19:50382564-50382609:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7593994140625	2	589.777145	1177.53974	0.5857	0.00034543	0.67695	0.00039925	1.2626	0.00074468	589.7776607409833	57.712	0.45453	57.712	57.514	57.968	0					36	15	3	0	0	0	0.39378	1	12639	12639		5.7319	0	1	360320	+		17867	12609	11904	12019	23905	23905					-0.041932154816777256
RSVEPGQTSSM	11	Unmodified	_RSVEPGQTSSM_					0	0	0			REV__ENST00000596243.5_1_19:50382564-50382609:+|nuORF	REV__ENST00000596243.5_1_19:50382564-50382609:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7611694335938	2	589.777145	1177.53974	0.51289	0.00030249	0.88422	0.0005215	1.3971	0.00082399	589.7777656460398	57.619	0.58844	57.688	57.437	58.026	0.068375					42	21	3	0	0	0	0.39378	1	12466	12466		5.7319	0	1	408430	+		17868	12609	11904	12019	23906	23906					-0.041932154816777256
RSVPILWKNH	10	Unmodified	_RSVPILWKNH_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.3611450195312	2	625.361839	1248.70913	-0.10865	-6.7948E-05	-1.4751	-0.00092246	-1.5837	-0.00099041	625.3611023807041	32.61	0.14819	32.684	32.621	32.769	0.07378					10	7	2	0	0	0	0.47318	1	4961	4961		0.40072	0	1	22243	+		17869	9468	11905	12020	23907	23907					0.0947189365383565
RTCPVRMS	8	Unmodified	_RTCPVRMS_					0	0	0		ZNF319|p.P63Hfs*96|1|0.34|ENSG00000166188|chr16:57998078-57998078|G/-|frameshift_variant	ZNF319|p.P63Hfs*96|1|0.34|ENSG00000166188|chr16:57998078-57998078|G/-|frameshift_variant	ZNF319|p.P63Hfs*96|1|0.34|ENSG00000166188|chr16:57998078-57998078|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2236633300781	2	475.238947	948.46334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.119	1	22.221	21.721	22.721	0.10178								0	0	0	0.38822	1	1936	1936		3.9444	0	1				17870	13774	11906	12021	23908	23908					-0.01295265792009559
RTCPVRMS	8	Unmodified	_RTCPVRMS_					0	0	0		ZNF319|p.P63Hfs*96|1|0.34|ENSG00000166188|chr16:57998078-57998078|G/-|frameshift_variant	ZNF319|p.P63Hfs*96|1|0.34|ENSG00000166188|chr16:57998078-57998078|G/-|frameshift_variant	ZNF319|p.P63Hfs*96|1|0.34|ENSG00000166188|chr16:57998078-57998078|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2235412597656	2	475.238947	948.46334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.506	1	22.608	22.108	23.108	0.10178								0	0	0	0.38822	1	2043	2043		7.2892	1.5288	1				17871	13774	11906	12021	23909	23909					-0.01295265792009559
RTDPDDLP	8	Unmodified	_RTDPDDLP_					0	0	0			REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2	REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.7218933105469	2	464.722164	927.429775	-0.048106	-2.2356E-05	-0.28701	-0.00013338	-0.33512	-0.00015574	464.72188531502223	33.162	0.53485	33.162	32.93	33.464	0					54	20	4	0	0	0	0.52502	1	5233	5233		9.3474	0	1	111830	+		17872	9171	11907	12022	23910	23910					-0.0368427275857357
RTEFTTAL	8	Unmodified	_RTEFTTAL_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.7503662109375	2	469.750724	937.486896	0.11265	5.2915E-05	-0.59121	-0.00027772	-0.47857	-0.00022481	469.7504212648132	38.404	0.44034	38.491	38.33	38.771	0.086884					22	15	2	0	0	0	0.53858	1	6684	6684		2.3027	0	1	49174			17873	1498	11908	12023	23911	23911					0.015651945177864945
RTHQQHDP	8	Unmodified	_RTHQQHDP_					0	0	0			REV__ENST00000475659.1_1_1:197237491-197326220:+|nuORF	REV__ENST00000475659.1_1_1:197237491-197326220:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2120361328125	2	509.744296	1017.47404	-0.12871	-6.5611E-05	1.2719	0.00064833	1.1432	0.00058272	509.74566522350676	39.928	1.0127	39.928	39.518	40.53	0					63	35	3	0	0	0	0.3576	1	7422	7422		5.2307	0	1	101490	+		17874	12052	11909	12024	23912	23912					-0.033998238217236576
RTHQQHDP	8	Unmodified	_RTHQQHDP_					0	0	0			REV__ENST00000475659.1_1_1:197237491-197326220:+|nuORF	REV__ENST00000475659.1_1_1:197237491-197326220:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.744296	1017.47404	0.010101	5.149E-06	1.1314	0.00057674	1.1415	0.00058189	509.74554587757	39.944	0.90842	40.033	39.435	40.343	0.088566	0.052261	-8.6883E-05	NaN	5.2307	52	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75720	+		17875	12052	11909	12024							-0.033998238217236576
RTLDRDLL	8	Unmodified	_RTLDRDLL_					0	0	0		ENSG00000166159|ENST00000299194|LRTM2	ENSG00000166159|ENST00000299194|LRTM2	ENSG00000166159|ENST00000299194|LRTM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2907409667969	2	501.290548	1000.56654	0.54985	0.00027564	0.11799	5.9149E-05	0.66785	0.00033478	501.2905139234308	80.889	3.0008	80.913	80.018	83.019	0.023605					358	107	5	0	0	0	0.52924	1	19654	19654		8.5933	8.5933	1	2978500			17876	4135	11910	12025	23913	23913					0.06628261191792717
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.968994140625	3	501.634424	1501.88144	0.55776	0.00027979	-0.19585	-9.8244E-05	0.36191	0.00018155	501.63421944831595	98.171	1.6915	98.171	97.461	99.153	0					182	95	3	0	0	0	0.4185	1	24994	24994		0.094841	0	1	192520			17877	3800	11911	12026	23914	23914					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.6344909667969	3	501.634424	1501.88144	0.53409	0.00026792	-0.13499	-6.7715E-05	0.3991	0.0002002	501.6342413648516	98.498	0.74931	98.54	98.404	99.153	0.041939					70	45	2	0	0	0	0.4185	2	24935	24935;25010		0.094841	0.094841	1	217270			17878	3800	11911	12026	23915;23916	23915					0.15057858113891598
RTLGRFMMI	9	Unmodified	_RTLGRFMMI_					0	0	0		ENST00000417507.6_1_12:102542116-102542152:+|nuORF	ENST00000417507.6_1_12:102542116-102542152:+|nuORF	ENST00000417507.6_1_12:102542116-102542152:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8077392578125	2	562.806996	1123.59944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.551	1	13.551	13.051	14.051	0								0	0	0	0.29233	1	232	232		0.6015	0	1				17879	6432	11912	12027	23917	23917					0.04258428718662799
RTLGRNVP	8	Unmodified	_RTLGRNVP_					0	0	0		ENST00000433847.2_1_12:9067399-9086462:+|nuORF;ENSG00000111752|ENST00000544916|PHC1	ENST00000433847.2_1_12:9067399-9086462:+|nuORF	ENST00000433847.2_1_12:9067399-9086462:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7720947265625	2	456.772326	911.530098	0.4826	0.00022044	-0.33902	-0.00015485	0.14358	6.5585E-05	456.7720973915302	84.802	0.68126	84.825	84.631	85.312	0.023132					76	30	4	0	0	0	0.53817	1	20861	20861		2.5775	0	1	1829600			17880	1724	11913	12028	23918	23918					0.07079429085740685
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8137817382812	2	575.814387	1149.61422	-0.01501	-8.6432E-06	-0.11065	-6.3715E-05	-0.12566	-7.2359E-05	575.8144367851169	43.446	0.31566	43.535	43.425	43.741	0.088924					18	11	2	0	0	0	0.33978	1	8221	8221		1.4819	0.28856	1	54476			17881	3805	11914	12029	23919	23919					0.04539915391978866
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	575.814387	1149.61422	-0.11266	-6.4872E-05	0.066514	3.83E-05	-0.046148	-2.6573E-05	575.8143023728946	43.546	0.35707	43.546	43.416	43.773	0	0.0056631	0.00013642	NaN	1.4819	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45022			17882	3805	11914	12029							0.04539915391978866
RTMILKRKGY	10	Unmodified	_RTMILKRKGY_					0	0	0			REV__ENST00000459803.5_1_3:75472125-75472206:-|nuORF	REV__ENST00000459803.5_1_3:75472125-75472206:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.381591796875	2	633.379175	1264.7438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.339	1	45.426	44.926	45.926	0.08754								0	0	0	0.33528	1	8777	8777		5.7319	0.83484	1		+		17883	11954	11915	12030	23920	23920					0.12201393470286348
RTNDFRQF	8	Unmodified	_RTNDFRQF_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2676391601562	2	542.270147	1082.52574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.743	1	59.743	59.243	60.243	0								0	0	0	0.38822	1	13278	13278		13.906	1.6654	1		+		17884	11750	11916	12031	23921	23921					-0.012220801278090221
RTNPNSGDFRF	11	Unmodified	_RTNPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5462646484375	3	437.546059	1309.61635	0.38135	0.00016686	-0.47927	-0.0002097	-0.097917	-4.2843E-05	437.5458743924728	36.947	0.70362	36.947	36.636	37.34	0					58	26	3	0	0	0	0.4042	1	6356	6356		3.3557	2.1409	1	49841			17885	2522	11917	12032	23922	23922					-0.026076558702015973
RTNPNSGDFRF	11	Unmodified	_RTNPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.8806457519531	3	437.546059	1309.61635	0.11736	5.1351E-05	-0.20119	-8.8028E-05	-0.083825	-3.6677E-05	437.5460495384566	36.871	0.57795	36.953	36.691	37.269	0.081715					52	22	3	0	0	0	0.37405	2	6186	6186;6229		9.5301	7.0953	1	86124			17886	2522	11917	12032	23923;23924	23923					-0.026076558702015973
RTPTNYYLF	9	Unmodified	_RTPTNYYLF_					0	0	0		ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.7984619140625	2	587.798206	1173.58186	0.53661	0.00031542	0.43299	0.00025451	0.9696	0.00056993	587.7981429032653	58.096	0.53312	58.166	57.943	58.476	0.070477					34	19	2	0	0	0	0.14884	1	12661	12661		36.506	12.486	1	524420			17887	4449	11918	12033	23925	23925					0.002011279889757134
RTPTNYYLF	9	Unmodified	_RTPTNYYLF_					0	0	0		ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	587.798206	1173.58186	0.38825	0.00022821	0.61985	0.00036435	1.0081	0.00059256	587.7982077257342	58.161	0.30986	58.161	57.907	58.217	0	-0.0027344	0.00013468	NaN	36.506	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519260			17888	4449	11918	12033							0.002011279889757134
RTQMEMLT	8	Unmodified	_RTQMEMLT_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.2431335449219	2	505.243895	1008.47324	0.077458	3.9135E-05	-0.98588	-0.00049811	-0.90842	-0.00045897	505.2437063012736	35.389	0.48545	35.468	35.226	35.711	0.078831					42	18	3	0	0	0	0.53858	1	5727	5727		2.3027	0.4585	1	94095			17889	1805	11919	12034	23926	23926					-0.030661225773087608
RTQRAAPL	8	Unmodified	_RTQRAAPL_					0	0	0		ENST00000535200.1_1_12:120648776-120650425:+|nuORF	ENST00000535200.1_1_12:120648776-120650425:+|nuORF	ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7725524902344	2	456.772326	911.530098	0.75548	0.00034508	-0.36806	-0.00016812	0.38742	0.00017696	456.7720553717257	82.131	0.55037	82.131	81.903	82.454	0					29	19	2	0	0	0	0.54081	1	20117	20117		0.79363	0	1	94043			17890	7042	11920	12035	23927	23927					0.07079429085729316
RTQRAAPL	8	Unmodified	_RTQRAAPL_					0	0	0		ENST00000535200.1_1_12:120648776-120650425:+|nuORF	ENST00000535200.1_1_12:120648776-120650425:+|nuORF	ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7723693847656	2	456.772326	911.530098	0.4826	0.00022044	-0.33902	-0.00015485	0.14358	6.5585E-05	456.7720973915302	84.802	0.68126	84.825	84.631	85.312	0.023132					76	30	4	0	0	0	0.53026	1	20810	20810		7.9102	0	1	1829600			17891	7042	11920	12035	23928	23928					0.07079429085729316
RTQRAAPL	8	Unmodified	_RTQRAAPL_					0	0	0		ENST00000535200.1_1_12:120648776-120650425:+|nuORF	ENST00000535200.1_1_12:120648776-120650425:+|nuORF	ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	456.772326	911.530098	0.24239	0.00011072	-0.11608	-5.3023E-05	0.12631	5.7696E-05	456.7722695755465	82.115	0.36549	82.136	81.905	82.271	0.021866	0.0027608	0.0001083	NaN	0.79363	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81642			17892	7042	11920	12035							0.07079429085729316
RTQRRFVLWPC	11	Unmodified	_RTQRRFVLWPC_					0	0	0		ENST00000492991.5_1_9:132595938-132597442:-|nuORF	ENST00000492991.5_1_9:132595938-132597442:-|nuORF	ENST00000492991.5_1_9:132595938-132597442:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7413635253906	3	487.934712	1460.78231	0.31738	0.00015486	1.8072	0.00088182	2.1246	0.0010367	488.26999838514075	48.038	0.51377	48.118	47.843	48.357	0.080032					26	18	2	0	0	0	0.311	1	9587	9587		0.50596	0.051438	1	37564			17893	6816	11921	12036	23929	23929					0.07034699104815445
RTQSEFTL	8	Unmodified	_RTQSEFTL_					0	0	0			REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2527160644531	2	491.253631	980.49271	-0.050145	-2.4634E-05	-0.90666	-0.0004454	-0.95681	-0.00047003	491.25350062201125	33.04	0.93028	33.115	32.734	33.665	0.074326					88	38	3	0	0	0	0.4433	2	5050	5050;5136		20.454	2.5332	1	260890	+		17894	11666	11922	12037	23930;23931	23930					0.0016829302946916869
RTRESPLV	8	Unmodified	_RTRESPLV_					0	0	0		ENST00000433903.5_3_20:49628906-49639344:-|nuORF	ENST00000433903.5_3_20:49628906-49639344:-|nuORF	ENST00000433903.5_3_20:49628906-49639344:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774658203125	2	479.277441	956.540328	0.098532	4.7224E-05	0.19499	9.3454E-05	0.29352	0.00014068	479.27740589104303	78.777	3.1544	78.807	77.792	80.946	0.030159					352	111	4	0	0	0	0.53494	1	18838	18838		4.756	0	1	1861400			17895	6497	11923	12038	23932	23932					0.060319920203255606
RTRIQFIRW	9	Unmodified	_RTRIQFIRW_					0	0	0		ENSG00000166118|ENST00000299140|SPATA19	ENSG00000166118|ENST00000299140|SPATA19	ENSG00000166118|ENST00000299140|SPATA19	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.375244140625	2	638.375281	1274.73601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.67	1	102.67	102.17	103.17	0								0	0	0	0.2927	1	26355	26355		0.52476	0	1				17896	4132	11924	12039	23933	23933					0.10963002264998067
RTRLRLPVR	9	Unmodified	_RTRLRLPVR_					0	0	0			REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8836059570312	2	583.883273	1165.75199	0.57687	0.00033682	0.57356	0.00033489	1.1504	0.00067171	583.8836081128408	111.92	0.44632	111.93	111.8	112.25	0.014595					87	55	2	0	0	0	0.33849	1	28575	28575		1.6526	1.6526	1	1428900	+		17897	11801	11925	12040	23934	23934					0.17574708501911118
RTRLRNQIP	9	Unmodified	_RTRLRNQIP_					0	0	0		ENST00000547994.5_1_12:56718022-56726878:-|nuORF;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000550555.1_1_12:56719046-56720180:-|nuORF	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3495483398438	2	577.349263	1152.68397	0.3088	0.00017828	-0.81179	-0.00046869	-0.50299	-0.0002904	577.348800827944	102.37	0.47221	102.37	102.11	102.58	0					67	33	3	0	0	0	0.3182	1	26234	26234		4.3292	0.38484	1	137360			17898	2733	11926	12041	23935	23935					0.11373838851272922
RTRLRNQIP	9	Unmodified	_RTRLRNQIP_					0	0	0		ENST00000547994.5_1_12:56718022-56726878:-|nuORF;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000550555.1_1_12:56719046-56720180:-|nuORF	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	ENST00000547994.5_1_12:56718022-56726878:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.348876953125	2	577.349263	1152.68397	0.47609	0.00027487	-1.015	-0.00058598	-0.53887	-0.00031112	577.3486628640163	102.27	0.43843	102.31	102.14	102.58	0.040909					53	30	3	0	0	0	0.3182	1	26087	26087		4.3292	2.485	1	133640			17899	2733	11926	12041	23936	23936					0.11373838851272922
RTRRWRRSS	9	Unmodified	_RTRRWRRSS_					0	0	0			REV__nc|ENSG00000180767|Q8NET6-2|CHST13	REV__nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8607788085938	2	630.860861	1259.70717	0.078593	4.9581E-05	-0.25553	-0.00016121	-0.17694	-0.00011162	630.8604671168754	90.089	1.349	90.089	89.834	91.183	0					82	51	3	0	0	0	0.30005	1	22550	22550		6.7232	1.8262	1	1158300	+		17900	12855	11927	12042	23937	23937					0.08770277688608985
RTRRWRRSS	9	Unmodified	_RTRRWRRSS_					0	0	0			REV__nc|ENSG00000180767|Q8NET6-2|CHST13	REV__nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	630.860861	1259.70717	0.078593	4.9581E-05	-0.25553	-0.00016121	-0.17694	-0.00011162	630.8604671168754	90.089	1.349	90.089	89.834	91.183	0	0.024307	-3.3962E-05	NaN	6.7232	82	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158300	+		17901	12855	11927	12042							0.08770277688608985
RTRTVLEV	8	Unmodified	_RTRTVLEV_					0	0	0			REV__ENST00000513750.5_1_11:67066841-67067513:+|nuORF	REV__ENST00000513750.5_1_11:67066841-67067513:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.29315185546875	2	487.293091	972.571629	0.40106	0.00019543	-0.026649	-1.2986E-05	0.37441	0.00018245	487.29292819697827	85.512	0.83881	85.537	85.358	86.197	0.025169					80	32	3	0	0	0	0.53614	2	20998	20998;21047		3.9444	0	1	285420	+		17902	7711	11928	12043	23938;23939	23938					0.08424565054417599
RTRTVLEV	8	Unmodified	_RTRTVLEV_					0	0	0			REV__ENST00000513750.5_1_11:67066841-67067513:+|nuORF	REV__ENST00000513750.5_1_11:67066841-67067513:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	487.293091	972.571629	0.27284	0.00013295	0.075578	3.6829E-05	0.34842	0.00016978	487.2930151178203	85.616	0.89604	85.616	85.339	86.235	0	0.039588	5.4994E-05	NaN	3.9444	76	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312640	+		17903	7711	11928	12043							0.08424565054417599
RTSDSFDK	8	Unmodified	_RTSDSFDK_					0	0	0		nc|ENSG00000203880|Q9NV79-2|PCMTD2;ENSG00000203880|ENST00000308824|PCMTD2	nc|ENSG00000203880|Q9NV79-2|PCMTD2	nc|ENSG00000203880|Q9NV79-2|PCMTD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2275695800781	2	478.227613	954.440674	-0.48897	-0.00023384	0.29042	0.00013889	-0.19855	-9.4951E-05	478.22774801406393	24.079	0.39326	24.079	23.926	24.319	0					56	37	2	0	0	0	0.53894	1	2571	2571		2.0598	1.3694	1	35001			17904	5447	11929	12044	23940	23940					-0.03836870384282065
RTSDVWLQV	9	Unmodified	_RTSDVWLQV_					0	0	0			REV__TP53|p.P151Rfs*27|1|0.6|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant	REV__TP53|p.P151Rfs*27|1|0.6|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7251586914062	2	552.29583	1102.57711	0.60965	0.0003367	0.50638	0.00027967	1.116	0.00061637	552.2962455566847	53.944	0.66412	53.944	53.575	54.239	0					31	23	2	0	0	0	0.25458	1	11500	11500		5.7319	0.97584	1	95483	+		17905	13031	11930	12045	23941	23941					0.029922438462108403
RTSDVWLQV	9	Unmodified	_RTSDVWLQV_					0	0	0			REV__TP53|p.P151Rfs*27|1|0.6|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant	REV__TP53|p.P151Rfs*27|1|0.6|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.29583	1102.57711	0.6511	0.0003596	-0.1298	-7.1686E-05	0.5213	0.00028791	552.2957962603173	53.921	0.32423	53.986	53.815	54.14	0.065128	0.021344	-0.00034897	NaN	5.7319	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76099	+		17906	13031	11930	12045							0.029922438462108403
RTSVRKHTRL	10	Unmodified	_RTSVRKHTRL_					0	0	0		ENST00000217173.6_1_20:3089740-3090079:-|nuORF	ENST00000217173.6_1_20:3089740-3090079:-|nuORF	ENST00000217173.6_1_20:3089740-3090079:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8900146484375	2	627.381094	1252.74764	-0.22352	-0.00014023	2.8115	0.0017639	2.588	0.0016236	627.884703498284	114.55	0.19714	114.55	114.44	114.64	0					33	26	2	0	0	0	0.31838	1	29260	29260		1.4819	0	1	63556			17907	5795	11931	12046	23942	23942					0.13137199288371448
RTSYSSAPL	9	Unmodified	_RTSYSSAPL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2532653808594	2	491.253631	980.49271	-0.12459	-6.1207E-05	-0.11697	-5.7464E-05	-0.24157	-0.00011867	491.25350184112745	45.739	0.47784	45.739	45.503	45.981	0					32	16	3	0	0	0	0.29576	1	9068	9068		7.2892	2.5332	1	108130			17908	4640	11932	12047	23943	23943					0.0016829302946916869
RTTGKSVPTV	10	Unmodified	_RTTGKSVPTV_					0	0	0		SPATA31E1|p.S910G|1|0.07|ENSG00000177992|chr9:87887215-87887215|A/G|missense_variant	SPATA31E1|p.S910G|1|0.07|ENSG00000177992|chr9:87887215-87887215|A/G|missense_variant	SPATA31E1|p.S910G|1|0.07|ENSG00000177992|chr9:87887215-87887215|A/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3038330078125	2	523.303655	1044.59276	0.67583	0.00035366	-0.2297	-0.0001202	0.44613	0.00023346	523.3034495273342	79.879	0.74492	79.879	79.483	80.228	0					56	25	3	0	0	0	0.44496	1	19480	19480		5.7319	0	1	224860			17909	13396	11933	12048	23944	23944					0.07224530363282611
RTVWRPWF	8	Unmodified	_RTVWRPWF_					0	0	0			REV__ENST00000358120.2_1_1:248261979-248262807:+|nuORF	REV__ENST00000358120.2_1_1:248261979-248262807:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.291015625	2	574.311618	1146.60868	0.26182	0.00015037	-1.7495	-0.0010047	-1.4876	-0.00085437	574.3105542468027	38.899	0.2716	38.986	38.858	39.13	0.08688					15	9	2	0	0	0	0.54081	1	6873	6873		0.79363	0	1	26475	+		17910	11516	11934	12049	23945	23945					0.04124281390818396
RTWRETFLDNL	11	Unmodified	_RTWRETFLDNL_					0	0	0		nc|ENSG00000146205|Q6IWH7-2|ANO7;ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7	nc|ENSG00000146205|Q6IWH7-2|ANO7	nc|ENSG00000146205|Q6IWH7-2|ANO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2528076171875	3	484.252764	1449.73646	-0.23918	-0.00011582	0.19744	9.5613E-05	-0.041736	-2.0211E-05	484.2528976635403	33.778	0.91606	33.852	33.571	34.487	0.074322					76	38	3	0	0	0	0.4185	1	5350	5350		0.094841	0	1	69051			17911	3281	11935	12050	23946	23946					0.0295833240356842
RVAAAARQ	8	Unmodified	_RVAAAARQ_					0	0	0		ENST00000282388.3_2_2:43451527-43452328:-|nuORF;ZFP36L2|p.T156Rfs*308|1|0.11|ENSG00000152518|chr2:43225310-43225338|CTCTCCTCGAAGGGCCGGCACAGCTCGGT/-|frameshift_variant;ZFP36L2|p.R160Pfs*314|1|0.33|ENSG00000152518|chr2:43225325-43225326|-/G|frameshift_variant;ZFP36L2|p.R130Sfs*344|1|0.41|ENSG00000152518|chr2:43225416-43225417|-/A|frameshift_variant;ZFP36L2|p.H133Qfs*341|1|0.44|ENSG00000152518|chr2:43225405-43225406|-/T|frameshift_variant;ZFP36L2|p.G145Rfs*329|1|0.79|ENSG00000152518|chr2:43225372-43225373|-/C|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant	ENST00000282388.3_2_2:43451527-43452328:-|nuORF	ENST00000282388.3_2_2:43451527-43452328:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.75146484375	2	421.751393	841.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.627	1	71.627	71.127	72.127	0								0	0	0	0.38822	1	16901	16901		5.2307	0	1				17912	5933	11936	12051	23947	23947					0.06114873397223164
RVALRCRPLVP	11	Unmodified	_RVALRCRPLVP_					0	0	0		KIF4A|p.I163Nfs*9|1|0.27|ENSG00000090889|chrX:70299174-70299174|T/-|frameshift_variant;nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;ENSG00000226650|ENST00000435029|KIF4B	KIF4A|p.I163Nfs*9|1|0.27|ENSG00000090889|chrX:70299174-70299174|T/-|frameshift_variant	KIF4A|p.I163Nfs*9|1|0.27|ENSG00000090889|chrX:70299174-70299174|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.3934936523438	2	640.392616	1278.77068	0.14508	9.291E-05	0.73292	0.00046936	0.878	0.00056227	640.3927220808432	49.821	0.23376	49.894	49.745	49.979	0.07312					12	8	2	0	0	0	0.41369	1	10131	10131		1.1933	0	1	47260			17913	1051	11937	12052	23948	23948					0.14244502081464816
RVCGAGRHRRS	11	Unmodified	_RVCGAGRHRRS_					0	0	0			REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF	REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.838623046875	2	627.839071	1253.66359	0.26113	0.00016395	-1.8152	-0.0011397	-1.5541	-0.00097573	627.838032604269	47.458	0.40828	47.458	47.263	47.672	0					24	13	3	0	0	0	0.3051	2	9529	9529;9577		17.443	11.711	1	93435	+		17914	12061	11938	12053	23949;23950	23949					0.046903449198225644
RVCGAGRHRRS	11	Unmodified	_RVCGAGRHRRS_					0	0	0			REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF	REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8381958007812	2	627.839071	1253.66359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.381	1	47.464	46.964	47.964	0.083096								0	0	0	0.3056	1	9389	9389		12.873	6.6808	1		+		17915	12061	11938	12053	23951	23951					0.046903449198225644
RVERARGPPL	10	Unmodified	_RVERARGPPL_					0	0	0		ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8431396484375	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.035	1	88.035	87.535	88.535	0								0	0	0	0.33762	1	21910	21910		2.9952	0	1				17916	2106	11939	12054	23952	23952					0.10422436476983421
RVFFRFPRR	9	Unmodified	_RVFFRFPRR_					0	0	0			REV__ENST00000263776.8_1_11:44087965-44089254:+|nuORF	REV__ENST00000263776.8_1_11:44087965-44089254:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.8764038085938	2	640.877991	1279.74143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.362	1	99.362	98.862	99.862	0								0	0	0	0.2927	1	25351	25351		0.52476	0.12405	1		+		17917	11246	11940	12055	23953	23953					0.11274725847511036
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1	ENSG00000116001|ENST00000433529|TIA1	ENSG00000116001|ENST00000433529|TIA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.3121337890625	2	608.31148	1214.60841	0.32921	0.00020026	0.30938	0.0001882	0.63859	0.00038846	608.3116600210112	45.587	0.43717	45.673	45.447	45.885	0.085621					28	16	2	0	0	0	0.3186	1	8866	8866		20.581	12.972	1	141340			17918	1935	11941	12056	23954	23954					0.009688168803222652
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.3194580078125	2	615.319306	1228.62406	-0.58759	-0.00036156	0.7137	0.00043915	0.12611	7.7596E-05	615.319752208531	44.234	0.46793	44.234	44.034	44.502	0					35	15	3	0	0	0	0.42184	1	8556	8556		9.544	4.647	1	86855			17919	3481	11942	12057	23955	23955					0.018891033973659432
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.3201293945312	2	615.319306	1228.62406	-0.37461	-0.0002305	0.8218	0.00050567	0.44719	0.00027516	615.3196064401144	44.067	0.47226	44.156	43.977	44.449	0.088921					35	15	3	0	0	0	0.37121	2	8389	8389;8440		14.957	11.676	1	125220			17920	3481	11942	12057	23956;23957	23956					0.018891033973659432
RVGLDWSTS	9	Unmodified	_RVGLDWSTS_					0	0	0			REV__ENST00000586572.1_3_19:2737154-2737346:-|nuORF	REV__ENST00000586572.1_3_19:2737154-2737346:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7591552734375	2	510.759081	1019.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.027	1	23.027	22.527	23.527	0								0	0	0	0.28724	1	2293	2293		1.6526	0	1		+		17921	12563	11943	12058	23958	23958					-0.005363045962326396
RVGPPPKRA	9	Unmodified	_RVGPPPKRA_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.3037109375	2	489.303793	976.593033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.62	1	109.64	109.14	110.14	0.017242								0	0	0	0.28631	1	28043	28043		1.8442	0	1				17922	4407	11944	12059	23959	23959					0.10379994873801479
RVHPDYVIT	9	Unmodified	_RVHPDYVIT_					0	0	0		ENST00000472871.1_1_13:95120883-95131509:-|nuORF;ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT	ENST00000472871.1_1_13:95120883-95131509:-|nuORF	ENST00000472871.1_1_13:95120883-95131509:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2841796875	2	550.298373	1098.58219	0.35572	0.00019575	0.063723	3.5067E-05	0.41945	0.00023082	550.2984806629282	37.405	0.56392	37.405	37.194	37.758	0					39	19	3	0	0	0	0.30005	1	6539	6539		6.7232	2.3939	1	64654			17923	888	11945	12060	23960	23960					0.03684547708826358
RVIKNEWYI	9	Unmodified	_RVIKNEWYI_					0	0	0			REV__nc|ENSG00000089234|Q7Z569-2|BRAP	REV__nc|ENSG00000089234|Q7Z569-2|BRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5643310546875	3	407.564391	1219.67134	-0.11565	-4.7136E-05	-0.0047731	-1.9454E-06	-0.12043	-4.9081E-05	407.564327346896	34.44	1.0273	34.516	34.249	35.276	0.076244					141	43	4	0	0	0	0.25209	1	5519	5519		12.241	4.0851	1	382080	+		17924	8295	11946	12061	23961	23961					0.07029382668360995
RVKAKKKK	8	Unmodified	_RVKAKKKK_					0	0	0		ENSG00000189134|ENST00000343684|NKAPL	ENSG00000189134|ENST00000343684|NKAPL	ENSG00000189134|ENST00000343684|NKAPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.35333251953125	2	493.353286	984.692019	0.33558	0.00016556	0.3069	0.00015141	0.64248	0.00031697	493.3533295277234	112.19	1.0199	112.2	111.86	112.88	0.014595					318	118	4	0	0	0	0.54097	1	28644	28644		0.69038	0.69038	1	10373000			17925	5193	11947	12062	23962	23962					0.1990601783869579
RVKDIGYIF	9	Unmodified	_RVKDIGYIF_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8175659179688	2	555.818941	1109.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.1	1	106.1	105.6	106.6	0								0	0	0	0.27782	1	27349	27349		3.5965	0.60125	1				17926	7363	11948	12063	23963	23963					0.0729030874831551
RVKSFIDVL	9	Unmodified	_RVKSFIDVL_					0	0	0			REV__ENSG00000102466|ENST00000376143|FGF14	REV__ENSG00000102466|ENST00000376143|FGF14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2066040039062	2	538.826766	1075.63898	0.2427	0.00013077	-0.1296	-6.9831E-05	0.1131	6.0942E-05	538.8267170731676	50.21	0.55398	50.21	49.935	50.489	0					41	19	3	0	0	0	0.25699	1	10436	10436		3.5965	1.019	1	137710	+		17927	8453	11949	12064	23964	23964					0.1041859526535518
RVLVVIVT	8	Unmodified	_RVLVVIVT_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	449.8087463378906	2	449.807845	897.601138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.12	1	112.12	111.62	112.62	0								0	0	0	0.38822	1	28703	28703		2.3027	0	1				17928	1703	11950	12065	23965	23965					0.1482412907057551
RVLYVFTKK	9	Unmodified	_RVLYVFTKK_					0	0	0		ENSG00000205495|ENST00000380370|OR52J3	ENSG00000205495|ENST00000380370|OR52J3	ENSG00000205495|ENST00000380370|OR52J3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3571166992188	2	577.358234	1152.70191	-0.02607	-1.5052E-05	-2.6423	-0.0015255	-2.6684	-0.0015406	577.356640771752	109.59	0.11345	109.59	109.5	109.61	0					9	7	2	0	0	0	0.33849	1	28205	28205		1.6526	0.17072	1	413420			17929	5519	11951	12066	23966	23966					0.13167161053388554
RVMPLPWLQ	9	Unmodified	_RVMPLPWLQ_					0	0	0			REV__ENST00000368932.5_1_6:110501639-110501768:+|nuORF	REV__ENST00000368932.5_1_6:110501639-110501768:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.3236694335938	2	570.323337	1138.63212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.03	1	116.03	115.53	116.53	0								0	0	0	0.2927	1	29566	29566		0.52476	0	1		+		17930	11577	11952	12067	23967	23967					0.06834959113166406
RVMWPMPP	8	Unmodified	_RVMWPMPP_					0	0	0		ENST00000398027.6_1_7:100004915-100013606:-|nuORF	ENST00000398027.6_1_7:100004915-100013606:-|nuORF	ENST00000398027.6_1_7:100004915-100013606:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.77862548828125	2	507.256608	1012.49866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.95	1	95.99	95.49	96.49	0.039772								0	0	0	0.38822	1	24157	24157		0.79363	0	1				17931	6351	11953	12068	23968	23968					-0.0070860326420643105
RVPCWKITLF	10	Unmodified	_RVPCWKITLF_					0	0	0		nc|ENSG00000204655|Q16653-4|MOG;ENSG00000204655|ENST00000376917|MOG;nc|ENSG00000204655|Q16653-5|MOG;nc|ENSG00000204655|Q16653-13|MOG	nc|ENSG00000204655|Q16653-4|MOG	nc|ENSG00000204655|Q16653-4|MOG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5753173828125	3	421.574121	1261.70053	0.49822	0.00021004	1.4563	0.00061396	1.9546	0.00082399	421.57468895904117	38.174	0.66677	38.174	38.05	38.716	0					37	22	2	0	0	0	0.46608	1	6881	6881		1.7423	0.96574	1	31303			17932	5490	11954	12069	23969	23969					0.08015203692980322
RVPNEEDPSL	10	Unmodified	_RVPNEEDPSL_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.28564453125	2	578.28566	1154.55677	0.33651	0.0001946	3.2498	0.0018793	3.5863	0.0020739	578.2856793396772	37.528	1.3186	37.528	36.983	38.302	0					122	47	3	0	0	0	0.13912	2	6536	6486;6536		40.725	20.271	1	163620			17933	1537	11955	12070	23970;23971	23971					-0.014329716042311702
RVPNEEDPSL	10	Unmodified	_RVPNEEDPSL_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.28564453125	2	578.28566	1154.55677	0.3913	0.00022629	3.7011	0.0021403	4.0924	0.0023666	578.7896472510165	37.372	1.2898	37.456	36.97	38.26	0.084476					110	46	3	0	0	0	0.17079	2	6344	6344;6388		37.075	15.328	1	174280			17934	1537	11955	12070	23972;23973	23972					-0.014329716042311702
RVQAPRLRQ	9	Unmodified	_RVQAPRLRQ_					0	0	0			REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF	REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3433227539062	2	562.343981	1122.67341	0.67629	0.00038031	-0.60067	-0.00033778	0.075623	4.2526E-05	562.3434998092586	85.35	1.4351	85.373	84.95	86.385	0.023125					122	54	3	0	0	0	0.34704	1	21103	21103		0.52476	0	1	847350	+		17935	11617	11956	12071	23974	23974					0.11697856196815337
RVQKALRL	8	Unmodified	_RVQKALRL_					0	0	0		ENST00000372916.8_1_X:100500413-100506073:+|nuORF;nc|ENSG00000102385|Q13474-2|DRP2;ENSG00000102385|ENST00000395209|DRP2	ENST00000372916.8_1_X:100500413-100506073:+|nuORF	ENST00000372916.8_1_X:100500413-100506073:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.8475036621094	2	492.327268	982.639983	-0.012456	-6.1323E-06	-1.2829	-0.00063159	-1.2953	-0.00063773	492.32681316097535	113.16	0.071342	113.16	113.11	113.19	0					12	9	2	0	0	0	0.3576	1	28990	28990		2.3027	0	1	136780			17936	1312	11957	12072	23975	23975					0.14796854424923822
RVQKALRL	8	Unmodified	_RVQKALRL_					0	0	0		ENST00000372916.8_1_X:100500413-100506073:+|nuORF;nc|ENSG00000102385|Q13474-2|DRP2;ENSG00000102385|ENST00000395209|DRP2	ENST00000372916.8_1_X:100500413-100506073:+|nuORF	ENST00000372916.8_1_X:100500413-100506073:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.8475036621094	2	492.327268	982.639983	-0.010731	-5.283E-06	-0.942	-0.00046377	-0.95273	-0.00046906	492.32687825468616	113.09	0.083145	113.09	113.05	113.13	0					17	11	2	0	0	0	0.3576	1	28990	28990		2.3027	0	1	131560			17937	1312	11957	12072	23976	23976					0.14796854424923822
RVRLELRRHQR	11	Unmodified	_RVRLELRRHQR_					0	0	0		ENST00000598424.5_1_19:17597384-17597952:+|nuORF;ENSG00000130304|ENST00000252595|SLC27A1	ENST00000598424.5_1_19:17597384-17597952:+|nuORF	ENST00000598424.5_1_19:17597384-17597952:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.97784423828125	3	506.978191	1517.91274	0.33825	0.00017148	0.65862	0.00033391	0.99687	0.00050539	507.3134297529464	103.42	0.79428	103.46	103.04	103.83	0.03791					114	79	2	0	0	0	0.41892	2	26430	26430;26504		0	0	1	228950			17938	2464	11958	12073	23977;23978	23977					0.17450431148017742
RVRLPLLF	8	Unmodified	_RVRLPLLF_					0	0	0			REV__ENST00000361264.8_1_9:34126412-34126766:-|nuORF	REV__ENST00000361264.8_1_9:34126412-34126766:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.3340148925781	2	507.334562	1012.65457	0.23231	0.00011786	0.80413	0.00040796	1.0364	0.00052582	507.8366410497774	109.81	0.11846	109.83	109.76	109.87	0.017235					24	15	2	0	0	0	0.54081	1	28087	28087		0.79363	0	1	1171500	+		17939	11541	11959	12074	23979	23979					0.14874926573099856
RVRPRLRLVV	10	Unmodified	_RVRPRLRLVV_					0	0	0			REV__ENSG00000225556|ENST00000694868|C2CD4D	REV__ENSG00000225556|ENST00000694868|C2CD4D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.4280395507812	2	632.427848	1262.84114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.09	1	108.09	107.59	108.59	0								0	0	0	0.33984	1	27879	27879		0.40072	0.050084	1		+		17940	11028	11960	12075	23980	23980					0.22023543461432382
RVRPRLRLVV	10	Unmodified	_RVRPRLRLVV_					0	0	0			REV__ENSG00000225556|ENST00000694868|C2CD4D	REV__ENSG00000225556|ENST00000694868|C2CD4D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.4259033203125	2	632.427848	1262.84114	0.26449	0.00016727	-1.3497	-0.00085362	-1.0853	-0.00068634	632.4266081303167	107.99	0.11354	108.01	107.97	108.08	0.022224					24	16	2	0	0	0	0.47318	1	27645	27645		0.40072	0	1	6585900	+		17941	11028	11960	12075	23981	23981					0.22023543461432382
RVRPRLRLVV	10	Unmodified	_RVRPRLRLVV_					0	0	0			REV__ENSG00000225556|ENST00000694868|C2CD4D	REV__ENSG00000225556|ENST00000694868|C2CD4D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.4259033203125	2	632.427848	1262.84114	0.26402	0.00016697	-1.6769	-0.0010605	-1.4129	-0.00089353	632.4257737359925	107.94	0.048752	107.96	107.94	107.99	0.022224					7	5	2	0	0	0	0.31853	1	27645	27645		0.40072	0	1	6689000	+		17942	11028	11960	12075	23982	23982					0.22023543461432382
RVRQRRHARLP	11	Unmodified	_RVRQRRHARLP_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.29931640625	3	482.299265	1443.87596	-0.27837	-0.00013426	0.34654	0.00016714	0.068177	3.2882E-05	482.2992997534872	106.5	0.76289	106.5	106.22	106.99	0					188	73	4	0	0	0	0.41693	1	27504	27504		0.45452	0	1	410650	+		17943	11396	11961	12076	23983	23983					0.17178179322127107
RVRQRRHARLP	11	Unmodified	_RVRQRRHARLP_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.6337585449219	3	482.299265	1443.87596	0.025288	1.2196E-05	0.028521	1.3756E-05	0.053809	2.5952E-05	482.299132719591	106.45	0.65705	106.48	106.25	106.91	0.025711					188	68	4	0	0	0	0.41309	2	27297	27297;27310		1.3296	0	1	433790	+		17944	11396	11961	12076	23984;23985	23984					0.17178179322127107
RVRQRRHARLP	11	Unmodified	_RVRQRRHARLP_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.6337585449219	3	482.299265	1443.87596	0.025288	1.2196E-05	0.028521	1.3756E-05	0.053809	2.5952E-05	482.299132719591	106.45	0.65705	106.48	106.25	106.91	0.025711					188	68	4	0	0	0	0.31097	1	27297	27297		1.3296	0	1	433790	+		17945	11396	11961	12076	23986	23986					0.17178179322127107
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3090209960938	2	532.790381	1063.56621	0.52566	0.00028007	0.1996	0.00010634	0.72526	0.00038641	532.7905024805224	60.189	0.37385	60.189	59.989	60.363	0					20	13	2	0	0	0	0.14444	1	13368	13368		24.991	0.97039	1	131140			17946	1652	11962	12077	23987	23987					0.036968414719467546
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3087158203125	2	532.790381	1063.56621	0.33841	0.0001803	0.80878	0.00043091	1.1472	0.00061121	532.7908915278092	60.052	0.45922	60.124	59.967	60.426	0.072338					25	16	2	0	0	0	0.19307	1	13268	13268		19.362	4.1135	1	184080			17947	1652	11962	12077	23988	23988					0.036968414719467546
RVTALLLL	8	Unmodified	_RVTALLLL_					0	0	0			REV__nc|ENSG00000266200|P54317|PNLIPRP2	REV__nc|ENSG00000266200|P54317|PNLIPRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	449.80853271484375	2	449.807845	897.601138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.11	1	112.11	111.61	112.61	0								0	0	0	0.38822	1	28699	28699		7.9102	2.6795	1		+		17948	12909	11963	12078	23989	23989					0.1482412907057551
RVVEDKPAH	9	Unmodified	_RVVEDKPAH_					0	0	0		nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF	nc|ENSG00000140470|Q8TE56-2|ADAMTS17	nc|ENSG00000140470|Q8TE56-2|ADAMTS17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7875366210938	2	525.788173	1049.56179	-0.18627	-9.7938E-05	0.21329	0.00011214	0.027017	1.4205E-05	525.7881777676192	25.921	0.29782	26.012	25.889	26.187	0.091507					38	24	2	0	0	0	0.34704	1	3014	3014		0.52476	0	1	17778			17949	6270	11964	12079	23990	23990					0.03899377049060604
RVVKRFIL	8	Unmodified	_RVVKRFIL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8477172851562	2	515.847836	1029.68112	0.31597	0.00016299	0.079186	4.0848E-05	0.39516	0.00020384	515.8476932444217	109.45	0.52798	109.47	109.15	109.67	0.019402					91	60	2	0	0	0	0.54081	2	27980	27980;27994		0.79363	0	1	1118800			17950	3984	11965	12080	23991;23992	23991					0.16746615464421666
RVVRDLLTHV	10	Unmodified	_RVVRDLLTHV_					0	0	0			REV__ENSG00000178896|ENST00000316052|EXOSC4	REV__ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.366455078125	2	604.367121	1206.71969	0.79696	0.00048166	-0.90846	-0.00054904	-0.1115	-6.7385E-05	604.3664161516286	99.864	0.62991	99.907	99.709	100.34	0.042839					86	38	3	0	0	0	0.47318	1	25429	25429		0.40072	0	1	415260	+		17951	10463	11966	12081	23993	23993					0.12459876308253115
RVVVKILKP	9	Unmodified	_RVVVKILKP_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.3721923828125	2	526.371144	1050.72774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.34	1	105.34	104.84	105.84	0								0	0	0	0.29525	1	27134	27134		0	0	1				17952	764	11967	12082	23994	23994					0.20440055295716775
RVWSMVTEF	9	Unmodified	_RVWSMVTEF_					0	0	0			REV__ENSG00000172578|ENST00000341319|KLHL6	REV__ENSG00000172578|ENST00000341319|KLHL6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2709350585938	2	577.786784	1153.55902	0.51075	0.00029511	0.44349	0.00025624	0.95424	0.00055135	577.7871336732932	63.161	0.84499	63.161	63.025	63.87	0					46	31	2	0	0	0	0.2298	1	14290	14290		16.942	0	1	180650	+		17953	10294	11968	12083	23995	23995					-0.011622144001194101
RVYIGRLSY	9	Unmodified	_RVYIGRLSY_					0	0	0		nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4	nc|ENSG00000124193|Q13247-2|SRSF6	nc|ENSG00000124193|Q13247-2|SRSF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.822021484375	2	563.822015	1125.62948	-0.12016	-6.7746E-05	-0.41139	-0.00023195	-0.53155	-0.0002997	563.8217063759135	43.552	0.33574	43.552	43.327	43.663	0					30	12	3	0	0	0	0.30757	1	8356	8356		5.7319	0.97584	1	59281			17954	7494	11969	12084	23996	23996					0.07168826979864207
RVYIGRLSY	9	Unmodified	_RVYIGRLSY_					0	0	0		nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4	nc|ENSG00000124193|Q13247-2|SRSF6	nc|ENSG00000124193|Q13247-2|SRSF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8218383789062	2	563.822015	1125.62948	0.0020219	1.14E-06	-0.2508	-0.0001414	-0.24877	-0.00014026	563.8217476755298	43.428	0.29764	43.517	43.361	43.658	0.088924					20	10	2	0	0	0	0.2546	1	8192	8192		12.241	6.0349	1	111440			17955	7494	11969	12084	23997	23997					0.07168826979864207
RWAKFVVL	8	Unmodified	_RWAKFVVL_					0	0	0			REV__chr12:121950336-121954120|394|14.57|0.01|10.67|+|1|TE_info:L1MB5,L1MB5_dup6515,L1,LINE,donor,+,121949930,121950336|None,CFAP251|10	REV__chr12:121950336-121954120|394|14.57|0.01|10.67|+|1|TE_info:L1MB5,L1MB5_dup6515,L1,LINE,donor,+,121949930,121950336|None,CFAP251|10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.81256103515625	2	509.813462	1017.61237	0.26259	0.00013387	-0.49327	-0.00025148	-0.23068	-0.0001176	509.8131352785827	102.21	0.087364	102.21	102.14	102.23	0					8	6	2	0	0	0	0.53858	1	26220	26220		2.3027	0	1	106180	+		17956	7781	11970	12085	23998	23998					0.10426951164697584
RWCHTPPLL	9	Unmodified	_RWCHTPPLL_					0	0	0			REV__ENST00000444348.1_1_1:36035435-36040229:-|nuORF	REV__ENST00000444348.1_1_1:36035435-36040229:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.798828125	2	561.797486	1121.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.71	1	103.75	103.25	104.25	0.03791								0	0	0	0.2722	1	26497	26497		4.756	1.8668	1		+		17957	11894	11971	12086	23999	23999					0.02449215419255779
RWCILWFA	8	Unmodified	_RWCILWFA_					0	0	0			REV__ENST00000554981.1_1_14:57060026-57070625:+|nuORF	REV__ENST00000554981.1_1_14:57060026-57070625:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.782958984375	2	547.783847	1093.55314	-0.14931	-8.1791E-05	-1.6384	-0.00089751	-1.7878	-0.0009793	547.7829689452815	25.716	0.44336	25.716	25.492	25.936	0					57	33	2	0	0	0	0.54081	1	3059	3059		0.79363	0	1	17864	+		17958	12457	11972	12087	24000	24000					0.01010731878864135
RWDVSSFF	8	Unmodified	_RWDVSSFF_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2511596679688	2	522.250892	1042.48723	0.32472	0.00016958	-0.62494	-0.00032638	-0.30022	-0.00015679	522.2505904953806	74.825	0.35943	74.873	74.701	75.061	0.048546					20	12	2	0	0	0	0.32838	1	17724	17724		36.127	9.7857	1	147740			17959	3265	11973	12088	24001	24001					-0.03231385762342143
RWFCPGWGC	9	Unmodified	_RWFCPGWGC_					0	0	0		ENST00000460547.6_1_6:43480300-43480648:-|nuORF	ENST00000460547.6_1_6:43480300-43480648:-|nuORF	ENST00000460547.6_1_6:43480300-43480648:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8021850585938	2	556.233664	1110.45278	0.051656	2.8733E-05	-1.9978	-0.0011112	-1.9461	-0.0010825	556.2324667675401	31.895	0.71298	31.895	31.649	32.362	0					45	27	2	0	0	0	0.25989	1	4959	4959		0.52476	0	1	23566			17960	6605	11974	12089	24002	24002					-0.0980324844642837
RWFDKSFTF	9	Unmodified	_RWFDKSFTF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.3055419921875	2	617.306198	1232.59784	-0.14981	-9.2477E-05	-0.43478	-0.00026839	-0.58459	-0.00036087	617.3056203155505	62.173	0.97366	62.173	61.938	62.912	0					87	36	4	0	0	0	0.0043442	3	14005	14005;14054;14107		96.936	69.307	1	556740			17961	1654	11975	12090	24003;24004;24005	24003					-0.009151657741085728
RWFDKSFTF	9	Unmodified	_RWFDKSFTF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.8731384277344	3	411.873224	1232.59784	0.54798	0.0002257	-0.57835	-0.00023821	-0.030376	-1.2511E-05	411.872915950764	62.156	0.94077	62.156	61.921	62.861	0					81	35	3	0	0	0	0.0081278	1	14022	14022		67.081	52.124	1	644590			17962	1654	11975	12090	24006	24006					-0.009151657741085728
RWFDKSFTF	9	Unmodified	_RWFDKSFTF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.8072509765625	2	617.306198	1232.59784	-0.11422	-7.051E-05	-0.28915	-0.00017849	-0.40337	-0.000249	617.3057889658169	62.027	1.0538	62.1	61.881	62.934	0.073418					80	39	3	0	0	0	0.008054	2	13822	13822;13868		73.196	47.797	1	737000			17963	1654	11975	12090	24007;24008	24007					-0.009151657741085728
RWFDKSFTF	9	Unmodified	_RWFDKSFTF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.8731689453125	3	411.873224	1232.59784	0.14159	5.8315E-05	-0.13195	-5.4348E-05	0.0096322	3.9672E-06	411.8730989868538	62.028	1.0285	62.102	61.935	62.964	0.073421					83	37	4	0	0	0	0.012041	2	13836	13836;13885		59.052	46.18	1	778840			17964	1654	11975	12090	24009;24010	24009					-0.009151657741085728
RWFDKTLQF	9	Unmodified	_RWFDKTLQF_					0	0	0		nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT	nc|ENSG00000095321|P43155-2|CRAT	nc|ENSG00000095321|P43155-2|CRAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.8273315429688	2	620.827298	1239.64004	0.019219	1.1931E-05	0.15687	9.7392E-05	0.17609	0.00010932	620.8271569776051	59.87	0.69841	59.87	59.758	60.456	0					33	24	2	0	0	0	0.15482	1	13334	13334		23.79	10.747	1	151000			17965	1097	11976	12091	24011	24011					0.029808096342549106
RWFDKTLQF	9	Unmodified	_RWFDKTLQF_					0	0	0		nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT	nc|ENSG00000095321|P43155-2|CRAT	nc|ENSG00000095321|P43155-2|CRAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.826904296875	2	620.827298	1239.64004	-0.091877	-5.704E-05	0.77403	0.00048054	0.68215	0.0004235	620.8273845848779	59.82	0.66214	59.892	59.735	60.397	0.072342					33	24	2	0	0	0	0.15482	2	13164	13164;13209		23.79	11.669	1	173120			17966	1097	11976	12091	24012;24013	24012					0.029808096342549106
RWFKSTLI	8	Unmodified	_RWFKSTLI_					0	0	0			REV__ENST00000280904.10_2_18:28671106-28672218:-|nuORF	REV__ENST00000280904.10_2_18:28671106-28672218:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7974243164062	2	525.808377	1049.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.915	1	97.955	97.455	98.455	0.040855								0	0	0	0.38822	1	24758	24758		9.3474	1.4373	1		+		17967	11295	11977	12092	24014	24014					0.07938343439468554
RWFQPAIPSW	10	Unmodified	_RWFQPAIPSW_					0	0	0		ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3357543945312	2	644.33529	1286.65603	0.20693	0.00013333	0.46466	0.0002994	0.67159	0.00043273	644.3354744955947	74.105	0.74117	74.105	73.92	74.661	0					73	27	4	0	0	0	0.095597	2	17642	17642;17686		45.74	32.125	1	1616100			17968	1081	11978	12093	24015;24016	24015					0.024165158711866752
RWFQPAIPSW	10	Unmodified	_RWFQPAIPSW_					0	0	0		ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3355712890625	2	644.33529	1286.65603	0.32986	0.00021254	0.1813	0.00011682	0.51117	0.00032936	644.335302191674	74.044	0.91443	74.093	73.902	74.816	0.048546					81	32	4	0	0	0	0.095597	2	17526	17477;17526		45.74	32.125	1	1297200			17969	1081	11978	12093	24017;24018	24018					0.024165158711866752
RWFWQDKF	8	Unmodified	_RWFWQDKF_					0	0	0			REV__nc|ENSG00000156103|P51512-2|MMP16	REV__nc|ENSG00000156103|P51512-2|MMP16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8021850585938	2	606.801083	1211.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.76	1	103.76	103.26	104.26	0								0	0	0	0.38822	1	26678	26678		2.3027	0.9732	1		+		17970	9745	11979	12094	24019	24019					-0.009717287086914439
RWFWQDKF	8	Unmodified	_RWFWQDKF_					0	0	0			REV__nc|ENSG00000156103|P51512-2|MMP16	REV__nc|ENSG00000156103|P51512-2|MMP16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.255126953125	2	606.801083	1211.58761	0.82583	0.00050111	-0.034851	-2.1148E-05	0.79098	0.00047997	606.8011308906928	77.459	3.1874	77.494	77.355	80.542	0.034485					145	113	2	0	0	0	0.35759	1	18579	18579		12.532	0.89125	1	469030	+		17971	9745	11979	12094	24020	24020					-0.009717287086914439
RWGLMHPE	8	Unmodified	_RWGLMHPE_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2527465820312	2	513.252911	1024.49127	-0.12441	-6.3854E-05	0.17616	9.0416E-05	0.051751	2.6562E-05	513.2528690228219	27.529	0.47477	27.529	27.344	27.818	0					73	38	2	0	0	0	0.53423	1	3554	3554		5.2307	5.2307	1	313210	+		17972	8848	11980	12095	24021	24021					-0.01999619540265485
RWGLVPSWF	9	Unmodified	_RWGLVPSWF_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.3064575195312	2	574.306001	1146.59745	0.28281	0.00016242	0.18173	0.00010437	0.46453	0.00026678	574.3062014537051	83.076	0.34608	83.098	82.958	83.304	0.021744					19	11	2	0	0	0	0.20358	1	20240	20240		18.146	8.7632	1	95566			17973	4931	11981	12096	24022	24022					0.030014592967063436
RWHGRFSW	8	Unmodified	_RWHGRFSW_					0	0	0			REV__ENST00000554614.2_1_14:73711044-73711323:-|nuORF	REV__ENST00000554614.2_1_14:73711044-73711323:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2836303710938	2	566.283392	1130.55223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.723	1	32.723	32.223	33.223	0								0	0	0	0.38822	1	5105	5105		0.79363	0	1		+		17974	12454	11982	12097	24023	24023					-0.007823464458397211
RWHSKQIF	8	Unmodified	_RWHSKQIF_					0	0	0			REV__ENSG00000181472|ENST00000325144|ZBTB2	REV__ENSG00000181472|ENST00000325144|ZBTB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.30322265625	2	551.30125	1100.58795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.233	1	98.233	97.733	98.733	0								0	0	0	0.38822	1	25008	25008		4.756	0.42677	1		+		17975	10533	11983	12098	24024	24024					0.04167691011161878
RWLPPFVEL	9	Unmodified	_RWLPPFVEL_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8294067382812	2	578.829309	1155.64407	0.58131	0.00033648	-0.6367	-0.00036854	-0.055384	-3.2058E-05	578.8287994635566	92.36	2.2007	92.397	91.309	93.51	0.03653					191	83	4	0	0	0	0.15282	1	23212	23212		24.021	3.5669	1	634070			17976	4140	11984	12099	24025	24025					0.07246899127994766
RWLPPFVEL	9	Unmodified	_RWLPPFVEL_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	578.829309	1155.64407	0.63156	0.00036557	-0.73647	-0.00042629	-0.1049	-6.0721E-05	578.8287461244244	92.303	1.3741	92.303	92.088	93.462	0	-0.046592	-6.4132E-05	NaN	24.021	121	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692090			17977	4140	11984	12099							0.07246899127994766
RWLPQKNAAQF	11	Unmodified	_RWLPQKNAAQF_					0	0	0		ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF	ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000221914|ENST00000380737|PPP2R2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.582275390625	3	453.582444	1357.7255	-0.35253	-0.0001599	-0.44511	-0.00020189	-0.79763	-0.00036179	453.5822634086199	42.256	0.67796	42.256	42.03	42.708	0					67	23	4	0	0	0	0.33929	1	7980	7980		13.519	5.5733	1	273240			17978	5593	11985	12100	24026	24026					0.06094974819916388
RWLPQKNAAQF	11	Unmodified	_RWLPQKNAAQF_					0	0	0		ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF	ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000221914|ENST00000380737|PPP2R2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.5820007324219	3	453.582444	1357.7255	-0.39768	-0.00018038	-0.14861	-6.7406E-05	-0.54629	-0.00024779	453.5823417951955	42.129	0.55304	42.219	42.018	42.571	0.089764					64	20	4	0	0	0	0.28294	1	7802	7802		19.987	12.041	1	318960			17979	5593	11985	12100	24027	24027					0.06094974819916388
RWLPQQNAAHF	11	Unmodified	_RWLPQQNAAHF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000175470|ENST00000455566|PPP2R2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.5709533691406	3	456.570427	1366.68945	-0.060436	-2.7593E-05	-0.33835	-0.00015448	-0.39879	-0.00018207	456.5702047003552	44.873	0.31284	44.961	44.804	45.117	0.087543					27	11	3	0	0	0	0.36212	1	8659	8659		10.899	8.6462	1	44357			17980	4626	11986	12101	24028	24028					0.020775176430788633
RWLRASSIRI	10	Unmodified	_RWLRASSIRI_					0	0	0		ENST00000419114.6_1_5:111093119-111093227:-|nuORF	ENST00000419114.6_1_5:111093119-111093227:-|nuORF	ENST00000419114.6_1_5:111093119-111093227:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.3889770507812	2	629.380563	1256.74657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.24	1	108.24	107.74	108.74	0								0	0	0	0.33738	1	27917	27917		3.2813	0.54611	1				17981	6442	11987	12102	24029	24029					0.12846984919451643
RWLWLDYVL	9	Unmodified	_RWLWLDYVL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.9010009765625	3	421.901003	1262.68118	0.81043	0.00034192	-0.53929	-0.00022752	0.27115	0.0001144	421.90061410857015	65.306	0.56224	65.306	65.112	65.675	0					54	20	4	0	0	0	0.29576	1	15075	15075		4.5289	1.4566	1	406860			17982	2482	11988	12103	24030	24030					0.0603457067375075
RWLYEARLR	9	Unmodified	_RWLYEARLR_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.574951171875	3	421.575401	1261.70437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.453	1	40.542	40.042	41.042	0.089645								0	0	0	0.28946	1	7302	7302		1.1933	0	1		+		17983	9276	11989	12104	24031	24031					0.08399009511072109
RWPAVISR	8	Unmodified	_RWPAVISR_					0	0	0		ENST00000507013.5_2_4:166248857-166248917:+|nuORF;ENST00000261507.10_1_4:166248809-166254516:+|nuORF;ENST00000393766.6_1_4:166248857-166259022:+|nuORF	ENST00000507013.5_2_4:166248857-166248917:+|nuORF	ENST00000507013.5_2_4:166248857-166248917:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7923278808594	2	492.790518	983.566484	0.30935	0.00015245	3.0402	0.0014982	3.3495	0.0016506	492.7917024471018	108.96	0.097656	108.98	108.93	109.03	0.019402					22	14	2	0	0	0	0.53494	1	27865	27865		4.756	0	1	713890			17984	5867	11990	12105	24032	24032					0.07404305982470305
RWPKKSAEF	9	Unmodified	_RWPKKSAEF_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8136596679688	2	574.81419	1147.61383	-0.10714	-6.1584E-05	-0.2775	-0.00015951	-0.38464	-0.00022109	574.8140094735032	26.946	0.68373	27.032	26.73	27.414	0.0867					82	47	2	0	0	0	0.33849	1	3255	3255		1.6526	0.45928	1	26989			17985	5728	11991	12106	24033	24033					0.04592540462795114
RWPKKSAEFLL	11	Unmodified	_RWPKKSAEFLL_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.9347839355469	3	458.934595	1373.78196	0.41309	0.00018958	-0.2432	-0.00011161	0.16989	7.797E-05	458.9344269517287	47.784	2.2507	47.784	47.144	49.394	0					170	77	3	0	0	0	0.40205	2	9590	9590;9703		3.8459	0.77364	1	202680			17986	5728	11992	12107	24034;24035	24034					0.11001602656597242
RWPKKSAEFLL	11	Unmodified	_RWPKKSAEFLL_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.93463134765625	3	458.934595	1373.78196	0.31171	0.00014305	-0.26667	-0.00012238	0.045041	2.0671E-05	458.934449187986	47.297	1.961	47.38	46.855	48.816	0.083092					195	72	4	0	0	0	0.36536	4	9395	9260;9395;9440;9546		10.527	1.2226	1	370830			17987	5728	11992	12107	24036;24037;24038;24039	24037					0.11001602656597242
RWREALCGL	9	Unmodified	_RWREALCGL_					0	0	0			REV__ENSG00000088766|ENST00000378863|CRLS1	REV__ENSG00000088766|ENST00000378863|CRLS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7900390625	2	552.292568	1102.57058	0.032778	1.8103E-05	2.388	0.0013189	2.4208	0.001337	552.2941116967453	58.555	0.57582	58.555	58.327	58.903	0					34	19	3	0	0	0	0.25579	1	12883	12883		4.3292	0	1	122320	+		17988	8287	11993	12108	24040	24040					0.0234002741385666
RWREALCGL	9	Unmodified	_RWREALCGL_					0	0	0			REV__ENSG00000088766|ENST00000378863|CRLS1	REV__ENSG00000088766|ENST00000378863|CRLS1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.292568	1102.57058	0.36672	0.00020254	3.3588	0.001855	3.7255	0.0020576	552.2939293771162	58.478	0.59526	58.548	58.322	58.917	0.070477	-0.0033668	0.00065135	NaN	4.3292	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137030	+		17989	8287	11993	12108							0.0234002741385666
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7421875	3	530.9844	1589.93137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.253	1	98.253	97.753	98.753	0								0	0	0	0.34185	1	25014	25014		0.094841	0.094841	1		+		17990	10980	11994	12109	24041	24041					0.1600026951819018
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.984619140625	3	530.9844	1589.93137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.74	1	100.78	100.28	101.28	0.042839								0	0	0	0.34212	1	25617	25617		0	0	1		+		17991	10980	11994	12109	24042	24042					0.1600026951819018
RWSPVRPLVF	10	Unmodified	_RWSPVRPLVF_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.8668823242188	2	628.866757	1255.71896	0.32593	0.00020497	-0.088528	-5.5672E-05	0.2374	0.00014929	628.866594471984	60.225	0.84042	60.225	60.045	60.885	0					68	30	3	0	0	0	0.1881	3	13451	13394;13404;13451		33.445	25.535	1	429420			17992	2064	11995	12110	24043;24044;24045	24045					0.10133081659205345
RWSPVRPLVF	10	Unmodified	_RWSPVRPLVF_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.58026123046875	3	419.580264	1255.71896	0.66169	0.00027763	-0.66079	-0.00027726	0.00089619	3.7602E-07	419.5799495100217	60.264	1.2341	60.264	60.017	61.251	0					104	44	4	0	0	0	0.41463	4	13449	13402;13449;13496;13546		10.315	5.4182	1	732360			17993	2064	11995	12110	24046;24047;24048;24049	24047					0.10133081659205345
RWSPVRPLVF	10	Unmodified	_RWSPVRPLVF_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3682250976562	2	628.866757	1255.71896	0.21174	0.00013316	0.041707	2.6228E-05	0.25345	0.00015939	628.8667034148975	60.167	0.80619	60.24	59.968	60.774	0.072945					64	28	4	0	0	0	0.1881	2	13239	13239;13285		40.239	32.329	1	434630			17994	2064	11995	12110	24050;24051	24050					0.10133081659205345
RWSPVRPLVF	10	Unmodified	_RWSPVRPLVF_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5802001953125	3	419.580264	1255.71896	0.02971	1.2466E-05	0.042468	1.7819E-05	0.072177	3.0284E-05	419.58018760838064	60.124	0.92074	60.196	59.988	60.909	0.072338					87	32	4	0	0	0	0.41463	3	13247	13247;13290;13337		10.315	5.4182	1	893550			17995	2064	11995	12110	24052;24053;24054	24052					0.10133081659205345
RWSRLFKQH	9	Unmodified	_RWSRLFKQH_					0	0	0		DNAH9|p.L1105R|1|0.3|ENSG00000007174|chr17:11669755-11669755|T/G|missense_variant	DNAH9|p.L1105R|1|0.3|ENSG00000007174|chr17:11669755-11669755|T/G|missense_variant	DNAH9|p.L1105R|1|0.3|ENSG00000007174|chr17:11669755-11669755|T/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.3494262695312	2	629.351806	1256.68906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.207	1	20.207	19.707	20.707	0								0	0	0	0.2927	1	1547	1547		0.52476	0.066424	1				17996	287	11996	12111	24055	24055					0.07098142713880407
RWTIRIHPSP	10	Unmodified	_RWTIRIHPSP_					0	0	0			REV__nc|ENSG00000162888|Q96MC9|IKBKE-AS1	REV__nc|ENSG00000162888|Q96MC9|IKBKE-AS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5755310058594	3	421.575401	1261.70437	-0.43014	-0.00018134	0.059353	2.5022E-05	-0.37079	-0.00015632	421.90983706338477	41.731	0.2568	41.731	41.627	41.884	0					11	8	2	0	0	0	0.31856	1	7801	7801		0.15932	0	1	49221	+		17997	12829	11997	12112	24056	24056					0.08399009511072109
RWVACCIT	8	Unmodified	_RWVACCIT_					0	0	0			REV__ENSG00000188938|ENST00000375412|FAM120AOS	REV__ENSG00000188938|ENST00000375412|FAM120AOS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.6910705566406	2	476.23059	950.446628	-0.35783	-0.00017041	-0.36312	-0.00017293	-0.72095	-0.00034334	476.23028571847016	32.893	0.20341	32.893	32.781	32.985	0					10	7	2	0	0	0	0.3576	1	5173	5173		0.69038	0.69038	1	13662	+		17998	10785	11998	12113	24057	24057					-0.030577666779777246
RWVWWLGQ	8	Unmodified	_RWVWWLGQ_					0	0	0		ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000473638.5_1_22:39708982-39709710:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8005981445312	2	565.798343	1129.58213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.012	1	17.012	16.512	17.512	0								0	0	0	0.38822	1	840	840		0.69038	0.088878	1				17999	6691	11999	12114	24058	24058					0.022525924994852176
RWVWWLGQ	8	Unmodified	_RWVWWLGQ_					0	0	0		ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENST00000473638.5_1_22:39708982-39709710:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8015747070312	2	565.798343	1129.58213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.007	1	17.084	16.584	17.584	0.077806								0	0	0	0.38822	1	765	765		0.69038	0.088878	1				18000	6691	11999	12114	24059	24059					0.022525924994852176
RWWAWAAW	8	Unmodified	_RWWAWAAW_					0	0	0			REV__ENST00000465806.6_1_X:48935109-48935457:-|nuORF	REV__ENST00000465806.6_1_X:48935109-48935457:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3162841796875	2	566.777411	1131.54027	0.25072	0.0001421	-3.7478	-0.0021242	-3.4971	-0.0019821	566.7744089085921	94.602	1.0269	94.64	94.061	95.088	0.038094					71	42	2	0	0	0	0.35759	1	23653	23653		9.3474	0	1	83151	+		18001	11993	12000	12115	24060	24060					-0.020239631890490273
RWYLLEYDF	9	Unmodified	_RWYLLEYDF_					0	0	0		tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.5482177734375	3	435.548518	1303.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.48	1	26.48	25.98	26.98	0								0	0	0	0.29394	1	3271	3271		0.26902	0	1				18002	13451	12001	12116	24061	24061					-0.015943163225074386
RYAAQLPAL	9	Unmodified	_RYAAQLPAL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.79022216796875	2	501.790184	1001.56581	0.39055	0.00019597	-0.023115	-1.1599E-05	0.36743	0.00018437	501.79008519674915	53.66	1.1947	53.66	53.234	54.429	0					131	45	4	0	0	0	0.0064512	3	11449	11352;11399;11449		78.149	42.624	1	1303200			18003	3060	12002	12117	24062;24063;24064	24064					0.0650946654272957
RYAAQLPAL	9	Unmodified	_RYAAQLPAL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.7903137207031	2	501.790184	1001.56581	0.43743	0.0002195	0.047909	2.404E-05	0.48533	0.00024354	501.79009946724017	53.638	1.1574	53.704	53.291	54.448	0.06543					138	49	4	0	0	0	0.0046499	4	11250	11206;11250;11293;11339		85.272	45.315	1	1068300			18004	3060	12002	12117	24065;24066;24067;24068	24066					0.0650946654272957
RYADDSFTPAF	11	Unmodified	_RYADDSFTPAF_					0	0	0		ENSG00000105514|ENST00000222120|RAB3D;ENSG00000105649|ENST00000222256|RAB3A	ENSG00000105514|ENST00000222120|RAB3D	ENSG00000105514|ENST00000222120|RAB3D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.2951049804688	2	645.293485	1288.57242	-0.14362	-9.2675E-05	0.086865	5.6053E-05	-0.056752	-3.6621E-05	645.2937063232891	58.623	0.34436	58.623	58.473	58.818	0					20	11	2	0	0	0	0.28838	1	12929	12929		19.362	4.9566	1	121520			18005	1475	12003	12118	24069	24069					-0.06032685087188838
RYADDSFTPAF	11	Unmodified	_RYADDSFTPAF_					0	0	0		ENSG00000105514|ENST00000222120|RAB3D;ENSG00000105649|ENST00000222256|RAB3A	ENSG00000105514|ENST00000222120|RAB3D	ENSG00000105514|ENST00000222120|RAB3D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.2930297851562	2	645.293485	1288.57242	0.089102	5.7497E-05	-0.30348	-0.00019583	-0.21438	-0.00013833	645.292954484589	58.583	0.36295	58.654	58.415	58.778	0.070477					17	11	2	0	0	0	0.33846	1	12785	12785		13.615	3.4643	1	124900			18006	1475	12003	12118	24070	24070					-0.06032685087188838
RYAEAVQLL	9	Unmodified	_RYAEAVQLL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8013305664062	2	531.800749	1061.58694	0.65559	0.00034864	0.45092	0.0002398	1.1065	0.00058844	531.8009928751521	54.34	0.58861	54.34	54.069	54.657	0					68	26	4	0	0	0	0.034936	2	11595	11595;11640		47.594	11.467	1	1838500			18007	5243	12004	12119	24071;24072	24071					0.058614318515992636
RYAEAVQLL	9	Unmodified	_RYAEAVQLL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8012084960938	2	531.800749	1061.58694	0.6755	0.00035923	0.4697	0.00024978	1.1452	0.00060902	531.8009188871674	54.291	0.65093	54.356	54.087	54.738	0.065132					76	31	4	0	0	0	0.064247	2	11494	11451;11494		40.239	8.9709	1	1517600			18008	5243	12004	12119	24073;24074	24074					0.058614318515992636
RYAGLYFCI	9	Unmodified	_RYAGLYFCI_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2911376953125	2	553.278595	1104.54264	0.32952	0.00018232	-0.10231	-5.6605E-05	0.22721	0.00012571	553.2786238727565	71.786	0.75377	71.786	71.474	72.228	0					36	26	2	0	0	0	0.22344	1	16895	16895		15.847	0.5987	1	217620			18009	545	12005	12120	24075	24075					-0.005452955662349268
RYAGLYFCI	9	Unmodified	_RYAGLYFCI_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2911376953125	2	553.278595	1104.54264	0.40455	0.00022383	0.10533	5.8275E-05	0.50987	0.0002821	553.2786870652915	71.619	0.43199	71.677	71.492	71.924	0.058578					28	15	2	0	0	0	0.22344	2	16709	16709;16743		15.847	2.3393	1	287490			18010	545	12005	12120	24076;24077	24076					-0.005452955662349268
RYAGLYFCI	9	Unmodified	_RYAGLYFCI_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	553.278595	1104.54264	0.32952	0.00018232	-0.10231	-5.6605E-05	0.22721	0.00012571	553.2786238727565	71.786	0.75377	71.786	71.474	72.228	0	0.054376	-0.00011989	NaN	15.847	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217620			18011	545	12005	12120							-0.005452955662349268
RYAIAFPLI	9	Unmodified	_RYAIAFPLI_					0	0	0		nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.3186645507812	2	532.318577	1062.6226	0.35561	0.0001893	0.15127	8.0523E-05	0.50688	0.00026982	532.3185791578923	77.121	0.30754	77.121	76.867	77.175	0					24	10	3	0	0	0	0.12809	1	18554	18554		26.884	2.2098	1	286390			18012	2212	12006	12121	24078	24078					0.0937951409928246
RYAITVWYF	9	Unmodified	_RYAITVWYF_					0	0	0		nc|ENSG00000269858|Q96KS0-2|EGLN2;ENSG00000269858|ENST00000303961|EGLN2;ENST00000593477.1_1_19:41313377-41313766:+|nuORF;ENST00000476717.1_1_1:231502159-231556008:-|nuORF;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000135766|ENST00000366641|EGLN1	nc|ENSG00000269858|Q96KS0-2|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.8187866210938	2	609.818941	1217.62333	0.32299	0.00019697	-0.30919	-0.00018855	0.013805	8.4188E-06	609.8187616458197	77.022	0.50123	77.022	76.73	77.231	0					59	17	5	0	0	0	0.16392	1	18566	18566		22.736	8.8302	1	710060			18013	5735	12007	12122	24079	24079					0.023223087483074778
RYAITVWYF	9	Unmodified	_RYAITVWYF_					0	0	0		nc|ENSG00000269858|Q96KS0-2|EGLN2;ENSG00000269858|ENST00000303961|EGLN2;ENST00000593477.1_1_19:41313377-41313766:+|nuORF;ENST00000476717.1_1_1:231502159-231556008:-|nuORF;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000135766|ENST00000366641|EGLN1	nc|ENSG00000269858|Q96KS0-2|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.819091796875	2	609.818941	1217.62333	0.46105	0.00028116	-0.23401	-0.0001427	0.22704	0.00013845	609.8187662408933	76.987	0.51762	77.023	76.713	77.23	0.035995					68	18	6	0	0	0	0.16392	1	18392	18392		22.736	8.8302	1	581120			18014	5735	12007	12122	24080	24080					0.023223087483074778
RYAKIVEIPF	10	Unmodified	_RYAKIVEIPF_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.8640747070312	2	618.360973	1234.70739	-0.079971	-4.9451E-05	0.54427	0.00033655	0.4643	0.0002871	618.8626709454004	57.757	0.27343	57.825	57.697	57.97	0.068371					14	10	2	0	0	0	0.40917	1	12541	12541		8.1555	0	1	115020			18015	3899	12008	12123	24081	24081					0.09942839845211893
RYAKQFRCK	9	Unmodified	_RYAKQFRCK_					0	0	0			REV__ENST00000584080.5_1_17:26887110-26897972:-|nuORF	REV__ENST00000584080.5_1_17:26887110-26897972:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3252563476562	2	600.326942	1198.63933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.858	1	21.858	21.358	22.358	0								0	0	0	0.2927	1	1967	1967		0.52476	0	1		+		18016	8278	12009	12124	24082	24082					0.047956917135707045
RYALQLQQI	9	Unmodified	_RYALQLQQI_					0	0	0		ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;CON__P08730-1	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8275146484375	2	566.827298	1131.64004	0.35449	0.00020093	-0.39412	-0.0002234	-0.039631	-2.2464E-05	566.8273805025625	55.799	0.63729	55.799	55.497	56.134	0					85	22	5	0	0	0	0.00022088	3	12044	12044;12090;12140		136.33	65.266	1	12211000		+	18017	210	12010	12125	24083;24084;24085	24083					0.0794880963428568
RYALQLQQI	9	Unmodified	_RYALQLQQI_					0	0	0		ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;CON__P08730-1	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7740478515625	2	566.827298	1131.64004	0.20916	0.00011856	-1.7199	-0.0009749	-1.5108	-0.00085634	566.8266168102141	56.376	1.6931	56.376	56.162	57.855	0					111	61	2	0	0	0	0.11557	1	12287	12287		34.402	19.563	1	360560		+	18018	210	12010	12125	24086	24086					0.0794880963428568
RYALQLQQI	9	Unmodified	_RYALQLQQI_					0	0	0		ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;CON__P08730-1	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.77490234375	2	566.827298	1131.64004	-0.10316	-5.8471E-05	0.082437	4.6728E-05	-0.020718	-1.1743E-05	566.8273802203505	58.576	0.46849	58.576	58.293	58.762	0					21	15	2	0	0	0	0.2229	1	12917	12917		19.257	4.4187	1	66678		+	18019	210	12010	12125	24087	24087					0.0794880963428568
RYALQLQQI	9	Unmodified	_RYALQLQQI_					0	0	0		ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;CON__P08730-1	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8276977539062	2	566.827298	1131.64004	0.28375	0.00016084	-0.17695	-0.0001003	0.1068	6.0536E-05	566.8274272005067	55.751	0.54687	55.816	55.574	56.121	0.065128					82	19	5	0	0	0	0.00022088	2	11942	11893;11942		136.33	65.2	1	10268000		+	18020	210	12010	12125	24088;24089	24089					0.0794880963428568
RYALQLQQI	9	Unmodified	_RYALQLQQI_					0	0	0		ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;CON__P08730-1	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7747192382812	2	566.827298	1131.64004	0.22878	0.00012968	-1.3117	-0.00074353	-1.083	-0.00061385	566.8266816010298	56.323	1.415	56.389	56.28	57.695	0.066448					90	52	2	0	0	0	0.1789	1	12198	12198		22.736	12.662	1	261450		+	18021	210	12010	12125	24090	24090					0.0794880963428568
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(94)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2948608398438	2	584.294973	1166.57539	0.077483	4.5273E-05	-0.22703	-0.00013265	-0.14955	-8.738E-05	584.2947969858632	43.567	1.5686	43.567	43.149	44.717	0					127	55	4	0	0	0	0.0044228	2	8396	8351;8396		93.938	46.274	1	729430			18022	1689	12011	12126	24091;24092	24092		100			-0.0012313323402395326
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(100)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.294921875	2	584.294973	1166.57539	0.12237	7.15E-05	0.037324	2.1809E-05	0.15969	9.3309E-05	584.2948986011033	45.822	1.1486	45.822	45.301	46.449	0					123	39	4	0	0	0	0.0039507	6	9036	8989;9036;9080;9123;9166;9208		103.82	49.991	1	506640			18023	1689	12011	12126	24093;24094;24095;24096;24097;24098	24094		100			-0.0012313323402395326
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(40)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2953491210938	2	584.294973	1166.57539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.558	1	46.558	46.058	47.058	0								0	0	0	0.077508	1	9276	9276		40.239	7.4535	1				18024	1689	12011	12126	24099	24099		100			-0.0012313323402395326
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(94)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.2947998046875	2	584.294973	1166.57539	0.30373	0.00017747	-0.23838	-0.00013928	0.065352	3.8185E-05	584.2947984928711	43.486	0.87764	43.575	43.186	44.064	0.088924					81	31	4	0	0	0	0.0044228	2	8197	8197;8242		93.938	22.016	1	688090			18025	1689	12011	12126	24100;24101	24100		100			-0.0012313323402395326
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(100)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.294921875	2	584.294973	1166.57539	0.38615	0.00022562	0.028224	1.6491E-05	0.41437	0.00024211	584.2948698854842	45.716	1.44	45.801	44.986	46.426	0.085621					135	54	4	0	0	0	0.0039507	4	8858	8858;8903;8951;8998		103.82	49.991	1	441070			18026	1689	12011	12126	24102;24103;24104;24105	24102		100			-0.0012313323402395326
RYALQMEQL	9	Unmodified	_RYALQMEQL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.297607421875	2	576.297516	1150.58048	0.56075	0.00032316	-0.51058	-0.00029424	0.050173	2.8914E-05	576.2971513512462	54.086	0.61334	54.086	53.867	54.48	0					45	22	3	0	0	0	0.013066	2	11536	11536;11589		63.227	35.873	1	289850			18027	1689	12011	12127	24106;24107	24106					0.011211706285848777
RYALQMEQL	9	Unmodified	_RYALQMEQL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2975463867188	2	576.297516	1150.58048	0.52398	0.00030197	-0.19799	-0.0001141	0.32599	0.00018787	576.2973020231002	54.056	0.45151	54.122	53.894	54.345	0.065128					39	16	3	0	0	0	0.02143	2	11391	11391;11444		57.249	32.258	1	303620			18028	1689	12011	12127	24108;24109	24108					0.011211706285848777
RYAQEFWE	8	Unmodified	_RYAQEFWE_					0	0	0		ENST00000488642.6_1_12:1034631-1036165:-|nuORF;ENST00000228345.9_1_12:1034631-1039134:-|nuORF;nc|ENSG00000002016|P43351-2|RAD52	ENST00000488642.6_1_12:1034631-1036165:-|nuORF	ENST00000488642.6_1_12:1034631-1036165:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7605590820312	2	564.759081	1127.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.998	1	25.095	24.595	25.595	0.096073								0	0	0	0.38822	1	2720	2720		2.3027	0.24298	1				18029	5808	12012	12128	24110	24110					-0.05504304596252041
RYAQNVAFF	9	Unmodified	_RYAQNVAFF_					0	0	0		ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2713623046875	2	558.285266	1114.55598	0.56857	0.00031742	0.01886	1.0529E-05	0.58743	0.00032795	558.2851275827002	55.618	0.68227	55.618	55.411	56.094	0					53	23	3	0	0	0	0.21398	1	12014	12014		16.942	2.104	1	302110			18030	4353	12013	12129	24111	24111					0.003282785373585284
RYAQNVAFF	9	Unmodified	_RYAQNVAFF_					0	0	0		ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.285400390625	2	558.285266	1114.55598	0.56815	0.00031719	-0.37864	-0.00021139	0.1895	0.0001058	558.284972484209	55.603	0.51484	55.669	55.432	55.946	0.065128					42	18	3	0	0	0	0.083504	2	11869	11869;11919		36.044	16.787	1	255360			18031	4353	12013	12129	24112;24113	24112					0.003282785373585284
RYASINAHL	9	Unmodified	_RYASINAHL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7830810546875	2	522.78289	1043.55123	0.077827	4.0687E-05	-0.6367	-0.00033286	-0.55887	-0.00029217	522.782167317113	35.104	1.6693	35.104	34.822	36.492	0					91	38	4	0	0	0	0.07372	1	5836	5836		38.176	2.0485	1	798830			18032	1813	12014	12130	24114	24114					0.031193943946163927
RYASINAHL	9	Unmodified	_RYASINAHL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7828979492188	2	522.78289	1043.55123	0.038695	2.0229E-05	-0.70244	-0.00036722	-0.66374	-0.00034699	522.7821577499573	35.033	1.0635	35.112	34.857	35.92	0.078827					100	40	4	0	0	0	0.079214	1	5684	5684		38.615	0	1	850780			18033	1813	12014	12130	24115	24115					0.031193943946163927
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7886962890625	2	537.788173	1073.56179	0.072385	3.8928E-05	0.18473	9.9348E-05	0.25712	0.00013828	537.7882365850531	34.169	1.8584	34.169	33.958	35.816	0					107	69	3	0	0	0	0.11198	2	5520	5520;5551		29.841	7.1043	1	314670			18034	13348	12015	12131	24116;24117	24116					0.027953770490512397
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.78857421875	2	537.788173	1073.56179	0.24808	0.00013341	0.032788	1.7633E-05	0.28086	0.00015105	537.7882146283914	34.1	0.71545	34.176	33.902	34.617	0.076244					79	28	4	0	0	0	0.14444	1	5386	5386		24.991	4.5373	1	342390			18035	13348	12015	12131	24118	24118					0.027953770490512397
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	537.788173	1073.56179	0.24808	0.00013341	0.032788	1.7633E-05	0.28086	0.00015105	537.7882146283914	34.1	0.71545	34.176	33.902	34.617	0.076244	0.0036369	-0.00011681	NaN	29.841	79	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342390			18036	13348	12015	12131							0.027953770490512397
RYASTPQKF	9	Unmodified	_RYASTPQKF_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2908935546875	2	549.290548	1096.56654	-0.11534	-6.3358E-05	0.19138	0.00010512	0.076034	4.1764E-05	549.2905908062284	26.212	0.34719	26.212	26.054	26.401	0					51	29	2	0	0	0	0.33978	1	3221	3221		1.4819	0.15237	1	29836			18037	4045	12016	12132	24119	24119					0.022122611917893664
RYATQLQQI	9	Unmodified	_RYATQLQQI_					0	0	0		nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1	nc|ENSG00000171346|P19012-2|KRT15	nc|ENSG00000171346|P19012-2|KRT15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8087768554688	2	560.809105	1119.60366	-0.3995	-0.00022404	-0.10093	-5.6605E-05	-0.50043	-0.00028065	560.809026377918	42.275	1.6887	42.275	42.03	43.719	0					125	59	4	0	0	0	0.0039507	3	8004	7953;8004;8051		103.82	44.455	1	1413100		+	18038	205	12017	12133	24120;24121;24122	24121					0.04863932737566756
RYATQLQQI	9	Unmodified	_RYATQLQQI_					0	0	0		nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1	nc|ENSG00000171346|P19012-2|KRT15	nc|ENSG00000171346|P19012-2|KRT15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8090209960938	2	560.809105	1119.60366	-0.17101	-9.5903E-05	-0.06343	-3.5572E-05	-0.23444	-0.00013148	560.8090327522516	42.173	1.0899	42.262	42.048	43.138	0.089764					102	41	4	0	0	0	0.0044228	2	7843	7843;7889		93.938	34.57	1	1302000		+	18039	205	12017	12133	24123;24124	24123					0.04863932737566756
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8164672851562	2	575.816399	1149.61824	0.4903	0.00028232	-0.26847	-0.00015459	0.22183	0.00012774	575.816182091504	70.711	1.3637	70.711	70.391	71.755	0					102	47	5	0	0	0	0.0043591	4	16589	16589;16635;16664;16689		96.367	52.508	1	4151500			18040	486	12018	12134	24125;24126;24127;24128	24125					0.04942004885697315
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8163452148438	2	575.816399	1149.61824	0.5864	0.00033766	-0.44429	-0.00025583	0.14211	8.1827E-05	575.816103743458	70.603	1.6674	70.663	70.425	72.092	0.060562					122	62	5	0	0	0	0.0042703	2	16461	16461;16516		99.755	37.183	1	6036800			18041	486	12018	12134	24129;24130	24129					0.04942004885697315
RYAVVLNATW	10	Unmodified	_RYAVVLNATW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.8276977539062	2	596.827298	1191.64004	0.2595	0.00015488	0.61597	0.00036763	0.87547	0.0005225	596.8274337338013	62.146	1.0424	62.146	61.956	62.999	0					70	38	4	0	0	0	4.6019E-05	3	14030	13983;14030;14197		114.19	58.009	1	2178000			18042	1119	12019	12135	24131;24132;24133	24132					0.05188809634273639
RYAVVLNATW	10	Unmodified	_RYAVVLNATW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.8275756835938	2	596.827298	1191.64004	0.14915	8.9015E-05	0.50922	0.00030392	0.65837	0.00039293	596.8274928194528	62.046	0.99943	62.119	61.935	62.934	0.073421					71	36	4	0	0	0	0.00070015	3	13866	13815;13866;13925		93.938	53.699	1	2068200			18043	1119	12019	12135	24134;24135;24136	24135					0.05188809634273639
RYCVQLSQI	9	Unmodified	_RYCVQLSQI_					0	0	0		TPT1-KRT17|1|fusion;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;CON__P02535-1;ENSG00000186395|ENST00000269576|KRT10;CON__P13645	TPT1-KRT17|1|fusion	TPT1-KRT17|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2921142578125	2	555.292233	1108.56991	0.43363	0.00024079	0.65458	0.00036348	1.0882	0.00060427	555.2920030476236	53.229	1.4833	53.229	52.945	54.429	0					127	56	4	0	0	0	0.0047429	4	11296	11250;11296;11350;11389		83.429	31.16	1	744260		+	18044	13439	12020	12136	24137;24138;24139;24140	24138					0.019971879741660814
RYCVQLSQI	9	Unmodified	_RYCVQLSQI_					0	0	0		TPT1-KRT17|1|fusion;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;CON__P02535-1;ENSG00000186395|ENST00000269576|KRT10;CON__P13645	TPT1-KRT17|1|fusion	TPT1-KRT17|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7960205078125	2	555.292233	1108.56991	0.6474	0.0003595	0.43513	0.00024163	1.0825	0.00060112	555.2918357163688	53.261	1.288	53.327	52.932	54.22	0.06543					138	58	3	0	0	0	0.015341	3	11204	11100;11204;11252		61.602	15.545	1	671470		+	18045	13439	12020	12136	24141;24142;24143	24142					0.019971879741660814
RYDIKALI	8	Unmodified	_RYDIKALI_					0	0	0		ENSG00000147613|ENST00000276616|PSKH2	ENSG00000147613|ENST00000276616|PSKH2	ENSG00000147613|ENST00000276616|PSKH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7613525390625	2	496.300384	990.586216	0.45603	0.00022633	-0.51252	-0.00025437	-0.056496	-2.8039E-05	496.2999472932457	38.371	0.44943	38.371	38.207	38.657	0					26	14	3	0	0	0	0.3576	1	6825	6825		2.8892	0	1	45708			18046	3335	12021	12137	24144	24144					0.0905463720255284
RYDNVTILF	9	Unmodified	_RYDNVTILF_					0	0	0		nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-3|GUCY1B1	nc|ENSG00000061918|Q02153-3|GUCY1B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8065795898438	2	570.806031	1139.59751	0.36291	0.00020715	0.25493	0.00014552	0.61784	0.00035267	570.8059097122299	67.722	0.43719	67.722	67.561	67.998	0					32	16	3	0	0	0	0.12214	1	15731	15731		27.629	0	1	243140			18047	651	12022	12138	24145	24145					0.0332941450603812
RYDNVTILF	9	Unmodified	_RYDNVTILF_					0	0	0		nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-3|GUCY1B1	nc|ENSG00000061918|Q02153-3|GUCY1B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8060913085938	2	570.806031	1139.59751	0.59511	0.00033969	-0.41177	-0.00023504	0.18333	0.00010465	570.8056225083365	67.711	0.46771	67.775	67.551	68.019	0.063507					32	15	3	0	0	0	0.17428	1	15555	15555		21.537	0	1	320670			18048	651	12022	12138	24146	24146					0.0332941450603812
RYEAAFPFL	9	Unmodified	_RYEAAFPFL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2902221679688	2	557.290017	1112.56548	0.14091	7.8527E-05	0.083472	4.6518E-05	0.22438	0.00012505	557.2899494650817	72.763	0.69991	72.763	72.528	73.228	0					63	24	4	0	0	0	0.14884	1	17234	17234		36.506	16.053	1	714800			18049	6009	12023	12139	24147	24147					0.013700468228989848
RYEAAFPFL	9	Unmodified	_RYEAAFPFL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.290283203125	2	557.290017	1112.56548	0.35979	0.00020051	-0.20773	-0.00011577	0.15206	8.4743E-05	557.2898074981204	72.705	0.72878	72.761	72.514	73.243	0.055939					54	24	3	0	0	0	0.20972	1	17065	17065		23.79	4.5328	1	806100			18050	6009	12023	12139	24148	24148					0.013700468228989848
RYEFGQALF	9	Unmodified	_RYEFGQALF_					0	0	0		ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7853393554688	2	565.785099	1129.55564	0.51494	0.00029134	0.065537	3.708E-05	0.58047	0.00032842	565.7851459167125	64.739	1.3369	64.739	64.516	65.853	0					109	48	3	0	0	0	0.063168	1	14795	14795		59.368	27.063	1	1733300			18051	3888	12024	12140	24149	24149					-0.003951411825028117
RYEFGQALF	9	Unmodified	_RYEFGQALF_					0	0	0		ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7854614257812	2	565.785099	1129.55564	0.4086	0.00023118	0.25551	0.00014456	0.66411	0.00037574	565.7852463207339	64.696	1.4622	64.765	64.478	65.941	0.068916					122	56	3	0	0	0	0.079214	1	14639	14639		53.404	28.005	1	1654300			18052	3888	12024	12140	24150	24150					-0.003951411825028117
RYEGILYTI	9	Unmodified	_RYEGILYTI_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B;LSM14A|p.D364*|1|0.16|ENSG00000257103|chr19:34219829-34219830|-/T|frameshift_variant;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3086547851562	2	564.308406	1126.60226	0.41386	0.00023354	0.58879	0.00033226	1.0026	0.0005658	564.3087158389083	63.167	0.63453	63.239	63.099	63.734	0.072701					56	25	3	0	0	0	0.081383	1	14229	14229		36.506	5.2379	1	394030			18053	3416	12025	12141	24151	24151					0.04402298648801661
RYEGILYTI	9	Unmodified	_RYEGILYTI_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B;LSM14A|p.D364*|1|0.16|ENSG00000257103|chr19:34219829-34219830|-/T|frameshift_variant;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	564.308406	1126.60226	0.44817	0.00025291	0.94896	0.0005355	1.3971	0.00078841	564.3088627366304	63.264	0.61792	63.264	63.089	63.707	0	0.012171	0.00020402	NaN	36.506	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324320			18054	3416	12025	12141							0.04402298648801661
RYEHFFAY	8	Unmodified	_RYEHFFAY_					0	0	0		tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2652587890625	2	566.764166	1131.51378	-0.1276	-7.232E-05	-0.19478	-0.00011039	-0.32238	-0.00018271	566.7640374860371	30.718	0.51615	30.793	30.647	31.163	0.075405					70	28	3	0	0	0	0.54081	1	4445	4445		0.79363	0.10326	1	84885			18055	13638	12026	12142	24152	24152					-0.04671696871014319
RYEKIEIMP	9	Unmodified	_RYEKIEIMP_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;ENST00000520316.5_1_8:28627126-28633440:-|nuORF;nc|ENSG00000104299|Q9NV88-2|INTS9	nc|ENSG00000104299|Q9NV88-3|INTS9	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8151245117188	2	589.815541	1177.61653	-0.45036	-0.00026563	-0.39129	-0.00023079	-0.84165	-0.00049642	589.8152990907986	41.829	2.0636	41.829	41.575	43.638	0					162	73	4	0	0	0	0.32614	1	8168	8168		3.2813	0	1	862190			18056	1407	12027	12143	24153	24153					0.034826278054197246
RYEQLNLE	8	Unmodified	_RYEQLNLE_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7907104492188	2	532.772188	1063.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.99	1	49.066	48.566	49.566	0.076607								0	0	0	0.3858	1	9876	9876		18.135	1.1927	1		+		18057	8144	12028	12144	24154	24154					0.0005996457521177945
RYEQTRLS	8	Unmodified	_RYEQTRLS_					0	0	0			REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7777099609375	2	526.777805	1051.54106	-0.23794	-0.00012534	0.23509	0.00012384	-0.0028556	-1.5043E-06	526.7779557688996	24.758	2.2137	24.758	23.461	25.675	0					347	186	2	0	0	0	0.53926	1	2548	2548		1.8442	1.8442	1	49592	+		18058	9071	12029	12145	24155	24155					0.0173478666936262
RYFDALLKL	9	Unmodified	_RYFDALLKL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.834228515625	2	569.834591	1137.65463	0.64663	0.00036847	-0.8116	-0.00046248	-0.16497	-9.4004E-05	569.8340474644609	65.743	0.43951	65.743	65.523	65.962	0					24	15	2	0	0	0	0.20162	1	15116	15116		18.373	1.2602	1	272920			18059	4948	12030	12146	24156	24156					0.09130881782402867
RYFDALLKL	9	Unmodified	_RYFDALLKL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8339233398438	2	569.834591	1137.65463	0.48463	0.00027616	-0.39797	-0.00022678	0.086658	4.9381E-05	569.8344142140855	65.663	0.37392	65.73	65.597	65.971	0.066872					24	14	2	0	0	0	0.24273	1	14944	14944		13.615	1.3742	1	242150			18060	4948	12030	12146	24157	24157					0.09130881782402867
RYFDGNLEKL	10	Unmodified	_RYFDGNLEKL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.8872375488281	3	418.887422	1253.64044	0.41689	0.00017463	-0.62983	-0.00026383	-0.21294	-8.9199E-05	418.88708712697786	48.335	0.41284	48.335	48.192	48.605	0					24	13	2	0	0	0	0.29583	1	9821	9821		23.016	1.2162	1	147280			18061	4144	12031	12147	24158	24158					0.02376184563490824
RYFDGNLEKL	10	Unmodified	_RYFDGNLEKL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.8874206542969	3	418.887422	1253.64044	0.18967	7.9452E-05	-0.23701	-9.9282E-05	-0.047339	-1.983E-05	418.8872905206453	48.23	0.42213	48.31	48.185	48.607	0.080029					22	13	2	0	0	0	0.17669	1	9661	9661		36.395	6.9579	1	119720			18062	4144	12031	12147	24159	24159					0.02376184563490824
RYFDGNLEKL	10	Unmodified	_RYFDGNLEKL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.3302001953125	2	627.827495	1253.64044	0.38335	0.00024067	0.0836	5.2486E-05	0.46695	0.00029316	628.3292880376599	48.26	0.34779	48.34	48.155	48.503	0.080029					21	11	3	0	0	0	0.43144	1	9672	9672		8.9762	1.8745	1	95712			18063	4144	12031	12147	24160	24160					0.02376184563490824
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5364685058594	3	405.536612	1213.58801	0.07328	2.9718E-05	-0.31468	-0.00012761	-0.2414	-9.7897E-05	405.5364463516802	43.342	1.5239	43.342	43.03	44.554	0					138	53	4	0	0	0	0.015562	5	8303	8253;8303;8347;8392;8441		62.78	53.236	1	1118100			18064	4222	12032	12148	24161;24162;24163;24164;24165	24162					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.8012084960938	2	607.80128	1213.58801	0.071463	4.3435E-05	-0.025928	-1.5759E-05	0.045535	2.7676E-05	607.8011694619062	43.339	1.8275	43.339	43.03	44.857	0					165	64	5	0	0	0	0.18348	6	8355	8355;8399;8449;8539;8593;8669		35.612	19.463	1	1243800			18065	4222	12032	12148	24166;24167;24168;24169;24170;24171	24166					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.8013916015625	2	607.80128	1213.58801	0.25632	0.00015579	0.019222	1.1683E-05	0.27555	0.00016748	607.8012035810387	43.22	1.4124	43.31	43.009	44.422	0.089764					125	50	4	0	0	0	0.00033237	5	8150	8100;8150;8196;8246;8295		98.73	69.648	1	1240600			18066	4222	12032	12148	24172;24173;24174;24175;24176	24173					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5364990234375	3	405.536612	1213.58801	-0.2449	-9.9316E-05	0.031087	1.2607E-05	-0.21381	-8.6709E-05	405.536623225763	43.213	1.697	43.303	43.039	44.736	0.089764					141	60	4	0	0	0	0.0049352	5	8131	8131;8178;8218;8269;8369		70.496	56.881	1	1449700			18067	4222	12032	12148	24177;24178;24179;24180;24181	24177					-0.010243537794849544
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	423.5466613769531	3	423.212128	1266.61456	0.42353	0.00017924	-0.37215	-0.0001575	0.051379	2.1744E-05	423.21198030148463	56.351	0.51265	56.351	56.162	56.674	0					42	18	3	0	0	0	0.2145	2	12246	12246;12292		28.181	25.338	1	505660			18068	602	12033	12149	24182;24183	24182					-0.00808664888131716
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	423.2123107910156	3	423.212128	1266.61456	0.024881	1.053E-05	0.099665	4.2179E-05	0.12455	5.2709E-05	423.2121145044532	56.255	0.46508	56.322	56.161	56.626	0.066452					41	17	3	0	0	0	0.24525	1	12078	12078		19.987	15.271	1	473930			18069	602	12033	12149	24184	24184					-0.00808664888131716
RYFENPQVI	9	Unmodified	_RYFENPQVI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.3037719726562	2	583.303655	1164.59276	0.33526	0.00019556	0.39213	0.00022873	0.72739	0.00042429	583.3040974760427	51.378	1.4798	51.378	50.624	52.104	0					97	50	4	0	0	0	0.22083	2	10714	10714;10759		16.149	2.2431	1	408950			18070	5216	12034	12150	24185;24186	24185					0.017045303632812647
RYFENPQVI	9	Unmodified	_RYFENPQVI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3042602539062	2	583.303655	1164.59276	0.55755	0.00032522	0.40807	0.00023803	0.96562	0.00056325	583.3039175384561	51.334	1.094	51.404	50.936	52.03	0.069874					75	41	3	0	0	0	0.22083	2	10556	10556;10608		16.149	7.4037	1	339810			18071	5216	12034	12150	24187;24188	24187					0.017045303632812647
RYFIAPAKF	9	Unmodified	_RYFIAPAKF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.8159790039062	2	556.816202	1111.61785	0.32915	0.00018328	-0.4914	-0.00027362	-0.16226	-9.0347E-05	556.8157627628118	48.803	0.73503	48.803	48.605	49.34	0					48	25	3	0	0	0	0.19398	1	9975	9975		19.257	10.664	1	214150			18072	2751	12035	12151	24189	24189					0.06650629956516241
RYFIAPAKF	9	Unmodified	_RYFIAPAKF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.8161010742188	2	556.816202	1111.61785	0.39111	0.00021777	-0.46951	-0.00026143	-0.078401	-4.3655E-05	556.8157722873625	48.694	0.58782	48.77	48.567	49.155	0.076607					40	20	3	0	0	0	0.11547	1	9791	9791		29.082	16.55	1	240340			18073	2751	12035	12151	24190	24190					0.06650629956516241
RYFIHFRMYL	10	Unmodified	_RYFIHFRMYL_					0	0	0		nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.5894775390625	3	482.588542	1444.7438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.376	1	46.462	45.962	46.962	0.085617								0	0	0	0.33869	1	9091	9091		1.7423	0	1				18074	7519	12036	12152	24191	24191					0.039213934702956976
RYFILPYVI	9	Unmodified	_RYFILPYVI_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3475341796875	2	592.347335	1182.68012	0.44896	0.00026594	0.064861	3.842E-05	0.51382	0.00030436	592.3472589178947	82.895	1.1531	82.895	82.625	83.778	0					99	39	4	0	0	0	0.12809	2	20360	20360;20407		26.884	15.243	1	1631900			18075	2948	12037	12153	24192;24193	24192					0.0960835630485235
RYFILPYVI	9	Unmodified	_RYFILPYVI_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3474731445312	2	592.347335	1182.68012	0.32195	0.0001907	0.20971	0.00012422	0.53166	0.00031493	592.3473506933759	82.865	1.3308	82.887	82.617	83.948	0.021751					122	46	5	0	0	0	0.05573	3	20185	20185;20227;20295		42.095	18.946	1	2195600			18076	2948	12037	12153	24194;24195;24196	24194					0.0960835630485235
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.819091796875	2	561.818941	1121.62333	0.32756	0.00018403	4.0783	0.0022913	4.4058	0.0024753	561.8187834843982	47.929	1.811	47.929	47.583	49.394	0					246	62	6	0	0	0	0.0022565	4	9677	9634;9677;9766;9820		114.2	45.097	1	2184600			18077	764	12038	12154	24197;24198;24199;24200	24198					0.06738308748322197
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8191528320312	2	561.818941	1121.62333	0.58766	0.00033016	3.5664	0.0020037	4.154	0.0023338	561.8186918345752	47.841	1.626	47.921	47.593	49.219	0.080032					185	58	5	0	0	0	0.0046221	5	9533	9486;9533;9561;9609;9635		86.332	48.156	1	2199200			18078	764	12038	12154	24201;24202;24203;24204;24205	24202					0.06738308748322197
RYFKGYFL	8	Unmodified	_RYFKGYFL_					0	0	0		ENSG00000125772|ENST00000379019|GPCPD1	ENSG00000125772|ENST00000379019|GPCPD1	ENSG00000125772|ENST00000379019|GPCPD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2947387695312	2	547.295102	1092.57565	0.20331	0.00011127	-0.13653	-7.4723E-05	0.066774	3.6545E-05	547.2950526944129	51.471	0.61678	51.471	51.269	51.886	0					31	20	3	0	0	0	0.50159	1	10756	10756		12.532	1.4171	1	85596			18079	2311	12039	12155	24206	24206					0.03306654548146071
RYFKGYFL	8	Unmodified	_RYFKGYFL_					0	0	0		ENSG00000125772|ENST00000379019|GPCPD1	ENSG00000125772|ENST00000379019|GPCPD1	ENSG00000125772|ENST00000379019|GPCPD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2943725585938	2	547.295102	1092.57565	0.3152	0.00017251	-0.25531	-0.00013973	0.059889	3.2777E-05	547.2949803952112	51.358	0.53534	51.428	51.236	51.771	0.069878					34	20	2	0	0	0	0.50159	1	10567	10567		12.532	3.9383	1	144070			18080	2311	12039	12155	24207	24207					0.03306654548146071
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3138427734375	2	602.313492	1202.61243	0.19671	0.00011848	0.16629	0.00010016	0.36299	0.00021864	602.31384000659	72.99	2.9888	72.99	72.436	75.425	0					382	109	5	0	0	0	0.0040275	10	17327	17231;17264;17282;17327;17370;17421;17465;17510;17555;17599		103.35	71.048	1	21661000			18081	484	12040	12156	24208;24209;24210;24211;24212;24213;24214;24215;24216;24217	24211					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3124389648438	2	602.313492	1202.61243	0.48309	0.00029097	-3.118	-0.001878	-2.6349	-0.001587	602.3112841916374	76.25	1.0626	76.25	76.081	77.144	0					73	41	2	0	0	0	0.12214	2	18411	18369;18411		27.629	9.4938	1	1045300			18082	484	12040	12156	24218;24219	24219					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8159790039062	2	602.313492	1202.61243	0.84736	0.00051037	0.057695	3.4751E-05	0.90505	0.00054513	602.3134033477796	79.708	2.7552	79.708	78.846	81.601	0					158	95	2	0	0	0	0.16392	5	19463	19463;19516;19662;19714;19864		22.736	17.004	1	112560			18083	484	12040	12156	24220;24221;24222;24223;24224	24220					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3129272460938	2	602.313492	1202.61243	0.74437	0.00044834	-0.36917	-0.00022236	0.3752	0.00022599	602.3131447223257	82.208	1.8176	82.208	81.461	83.279	0					95	63	2	0	0	0	0.11547	2	20235	20235;20357		29.082	16.55	1	113480			18084	484	12040	12156	24225;24226	24225					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3132934570312	2	602.313492	1202.61243	0.42928	0.00025856	0.30628	0.00018448	0.73556	0.00044304	602.815577975015	95.255	0.62544	95.255	94.779	95.405	0					44	26	2	0	0	0	0.27332	1	24056	24056		10.074	0	1	61420			18085	484	12040	12156	24227	24227					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3140258789062	2	602.313492	1202.61243	0.71738	0.00043209	0.029763	1.7927E-05	0.74715	0.00045002	602.313535345551	98.002	0.4249	98.002	97.887	98.312	0					25	22	2	0	0	0	0.27332	1	24928	24928		10.074	2.465	1	47054			18086	484	12040	12156	24228	24228					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3142700195312	2	602.313492	1202.61243	0.09366	5.6412E-05	0.059478	3.5825E-05	0.15314	9.2237E-05	602.3134268685299	107.17	0.97837	107.17	106.46	107.44	0					141	94	2	0	0	0	0.20358	11	27485	27485;27524;27543;27569;27586;27606;27625;27650;27676;27678;27693		18.146	12.414	1	73277			18087	484	12040	12156	24229;24230;24231;24232;24233;24234;24235;24236;24237;24238;24239	24229					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2998657226562	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.4	1	77.4	76.9	77.9	0								0	0	0	0.13619	1	18670	18670		27.629	9.4938	1				18088	484	12040	12156	24240	24240					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3133544921875	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.416	1	77.416	76.916	77.916	0								0	0	0	0.078437	1	18675	18675		39.95	26.335	1				18089	484	12040	12156	24241	24241					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3134765625	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.967	1	77.967	77.467	78.467	0								0	0	0	0.096229	1	18844	18844		34.402	20.496	1				18090	484	12040	12156	24242	24242					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3138427734375	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.819	1	78.819	78.319	79.319	0								0	0	0	0.16903	1	19103	19103		22.736	11.937	1				18091	484	12040	12156	24243	24243					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.314208984375	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.023	1	79.023	78.523	79.523	0								0	0	0	0.12644	1	19165	19165		29.082	15.176	1				18092	484	12040	12156	24244	24244					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.331787109375	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.358	1	87.358	86.858	87.858	0								0	0	0	0.19984	1	21705	21705		18.146	6.5061	1				18093	484	12040	12156	24245	24245					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3153076171875	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.445	1	97.445	96.945	97.945	0								0	0	0	0.24978	1	24770	24770		9.3831	4.0862	1				18094	484	12040	12156	24246	24246					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3140258789062	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.334	1	98.334	97.834	98.834	0								0	0	0	0.26267	1	25039	25039		6.7232	0	1				18095	484	12040	12156	24247	24247					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3145141601562	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.195	1	99.195	98.695	99.695	0								0	0	0	0.27782	1	25300	25300		3.5965	0	1				18096	484	12040	12156	24248	24248					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.31201171875	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.369	1	99.369	98.869	99.869	0								0	0	0	0.27613	1	25353	25353		3.9444	0.94915	1				18097	484	12040	12156	24249	24249					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3139038085938	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.11	1	104.11	103.61	104.61	0								0	0	0	0.26517	1	26779	26779		6.2058	1.3088	1				18098	484	12040	12156	24250	24250					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3134155273438	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.34	1	104.34	103.84	104.84	0								0	0	0	0.22786	1	26845	26845		13.906	3.1065	1				18099	484	12040	12156	24251	24251					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3118896484375	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.43	1	107.43	106.93	107.93	0								0	0	0	0.26517	1	27729	27729		6.2058	1.6769	1				18100	484	12040	12156	24252	24252					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.8074340820312	2	602.313492	1202.61243	0.50231	0.00030255	-4.2254	-0.002545	-3.7231	-0.0022425	602.3108768855433	76.058	0.12183	76.058	76.015	76.137	0					15	9	3	0	0	0	0.20194	1	18264	18264		24.021	6.9077	1	777580			18101	484	12040	12156	24253	24253					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2918090820312	2	602.313492	1202.61243	0.65383	0.00039381	-1.6176	-0.00097428	-0.96374	-0.00058047	602.3125648273459	88.075	0.40326	88.075	87.736	88.139	0					16	13	2	0	0	0	0.24929	1	21840	21840		9.3831	2.0939	1	76479			18102	484	12040	12156	24254	24254					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2520751953125	2	602.313492	1202.61243	0.853	0.00051378	-0.82998	-0.00049991	0.023021	1.3866E-05	602.3132379112833	84.799	0.53076	84.799	84.723	85.254	0					25	19	2	0	0	0	0.24929	1	21003	21003		9.3831	2.2814	1	112160			18103	484	12040	12156	24255	24255					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.314208984375	2	602.313492	1202.61243	0.3455	0.0002081	0.019135	1.1525E-05	0.36464	0.00021963	602.3137485690904	73.024	2.6965	73.077	72.427	75.123	0.052574					336	98	6	0	0	0	0.0021834	8	17141	17098;17141;17185;17230;17269;17312;17353;17394		114.65	89.25	1	18609000			18104	484	12040	12156	24256;24257;24258;24259;24260;24261;24262;24263	24257					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.31298828125	2	602.313492	1202.61243	0.51363	0.00030936	0.14825	8.9292E-05	0.66187	0.00039866	602.3134046445387	78.126	2.4649	78.156	77.338	79.803	0.030159					139	87	2	0	0	0	0.16392	5	18928	18818;18928;19006;19061;19069		22.736	14.581	1	144720			18105	484	12040	12156	24264;24265;24266;24267;24268	24265					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.313720703125	2	602.313492	1202.61243	0.61109	0.00036807	-0.081772	-4.9252E-05	0.52932	0.00031882	602.3134570186122	79.987	0.39069	80.013	79.769	80.16	0.026428					18	13	2	0	0	0	0.20358	1	19287	19287		18.146	7.3468	1	180530			18106	484	12040	12156	24269	24269					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3141479492188	2	602.313492	1202.61243	0.78425	0.00047237	-0.19129	-0.00011521	0.59296	0.00035715	602.3133028342835	80.52	1.6898	80.543	79.988	81.678	0.023613					83	60	2	0	0	0	0.20358	3	19447	19447;19505;19565		18.146	12.414	1	121200			18107	484	12040	12156	24270;24271;24272	24270					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.31298828125	2	602.313492	1202.61243	0.43542	0.00026226	-0.42372	-0.00025521	0.011704	7.0492E-06	602.3131289730186	106.88	0.19243	106.91	106.77	106.96	0.025711					28	19	2	0	0	0	0.24021	2	27372	27365;27372		13.906	3.1065	1	58423			18108	484	12040	12156	24273;24274	24274					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.314208984375	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.058	1	78.09	77.59	78.59	0.031349								0	0	0	0.13619	1	18713	18713		27.629	16.829	1				18109	484	12040	12156	24275	24275					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3131713867188	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.437	1	81.459	80.959	81.959	0.021866								0	0	0	0.22786	1	19738	19738		13.906	3.1065	1				18110	484	12040	12156	24276	24276					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.314453125	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.806	1	82.828	82.328	83.328	0.021744								0	0	0	0.19984	1	20156	20156		18.146	0.011366	1				18111	484	12040	12156	24277	24277					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3138427734375	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.095	1	83.117	82.617	83.617	0.021744								0	0	0	0.16903	1	20244	20244		22.736	11.912	1				18112	484	12040	12156	24278	24278					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2702026367188	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.309	1	97.35	96.85	97.85	0.040855								0	0	0	0.26517	1	24574	24574		6.2058	1.6769	1				18113	484	12040	12156	24279	24279					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3139038085938	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.404	1	97.445	96.945	97.945	0.040855								0	0	0	0.26517	1	24603	24603		6.2058	1.6769	1				18114	484	12040	12156	24280	24280					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.31396484375	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.231	1	98.273	97.773	98.773	0.041931								0	0	0	0.27782	1	24855	24855		3.5965	0	1				18115	484	12040	12156	24281	24281					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3121948242188	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.259	1	99.302	98.802	99.802	0.042839								0	0	0	0.26517	1	25163	25163		6.2058	1.6769	1				18116	484	12040	12156	24282	24282					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3126220703125	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.54	1	101.58	101.08	102.08	0.042656								0	0	0	0.26267	1	25858	25858		6.7232	1.8262	1				18117	484	12040	12156	24283	24283					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3143920898438	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.85	1	103.89	103.39	104.39	0.03791								0	0	0	0.24643	1	26536	26536		10.074	1.9184	1				18118	484	12040	12156	24284	24284					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3135986328125	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.52	1	106.55	106.05	107.05	0.025711								0	0	0	0.27782	1	27273	27273		3.5965	0	1				18119	484	12040	12156	24285	24285					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3154296875	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.74	1	106.76	106.26	107.26	0.025711								0	0	0	0.22786	1	27333	27333		13.906	3.1065	1				18120	484	12040	12156	24286	24286					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3139038085938	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.02	1	107.04	106.54	107.54	0.025711								0	0	0	0.22786	1	27411	27411		13.906	3.1065	1				18121	484	12040	12156	24287	24287					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3133544921875	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.16	1	107.19	106.69	107.69	0.025711								0	0	0	0.22786	1	27449	27449		13.906	3.1065	1				18122	484	12040	12156	24288	24288					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3138427734375	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.29	1	107.32	106.82	107.82	0.025711								0	0	0	0.24643	1	27486	27486		10.074	2.465	1				18123	484	12040	12156	24289	24289					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3115844726562	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.31	1	107.33	106.83	107.83	0.025711								0	0	0	0.22786	1	27490	27490		13.906	3.1065	1				18124	484	12040	12156	24290	24290					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3135986328125	2	602.313492	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.34	1	107.36	106.86	107.86	0.025711								0	0	0	0.26267	1	27497	27497		6.7232	0	1				18125	484	12040	12156	24291	24291					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.31298828125	2	602.313492	1202.61243	0.52416	0.00031571	-3.1469	-0.0018954	-2.6227	-0.0015797	602.3113896812689	76.21	1.1122	76.249	76.095	77.208	0.039238					77	43	2	0	0	0	0.15403	1	18398	18398		34.402	20.496	1	897440			18126	484	12040	12156	24292	24292					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.82421875	2	602.313492	1202.61243	0.43545	0.00026228	-1.1068	-0.00066663	-0.67133	-0.00040435	602.3130896400577	107.49	0.048615	107.51	107.48	107.53	0.022224					6	5	2	0	0	0	0.25376	1	27540	27540		6.2058	0.9089	1	33027			18127	484	12040	12156	24293	24293					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3140869140625	2	602.313492	1202.61243	0.45983	0.00027696	-0.14739	-8.8773E-05	0.31244	0.00018819	602.3134223558648	106.13	0.05175	106.16	106.13	106.18	0.029739					8	5	2	0	0	0	0.25699	1	27172	27172		3.5965	0	1	27482			18128	484	12040	12156	24294	24294					0.01922906374034028
RYFPDLDEL	9	Unmodified	_RYFPDLDEL_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.28857421875	2	584.287671	1166.56079	0.66906	0.00039092	-1.3121	-0.00076662	-0.643	-0.0003757	584.2872180456185	60.109	0.69855	60.109	59.784	60.483	0					51	24	3	0	0	0	0.24021	1	13378	13378		13.906	0.29118	1	362380	+		18129	10151	12041	12157	24295	24295					-0.015828821105287716
RYFPDLDEL	9	Unmodified	_RYFPDLDEL_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.28759765625	2	584.287671	1166.56079	0.51089	0.00029851	-0.50484	-0.00029497	0.00605	3.5349E-06	584.2873789274881	60.036	0.6659	60.108	59.911	60.577	0.072338					48	23	3	0	0	0	0.27929	1	13256	13256		9.3831	2.0939	1	419670	+		18130	10151	12041	12157	24296	24296					-0.015828821105287716
RYFPDLDEL	9	Unmodified	_RYFPDLDEL_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	584.287671	1166.56079	0.66906	0.00039092	-1.3121	-0.00076662	-0.643	-0.0003757	584.2872180456185	60.109	0.69855	60.109	59.784	60.483	0	0.000389	-0.00052684	NaN	13.906	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362380	+		18131	10151	12041	12157							-0.015828821105287716
RYFPTQALNF	10	Unmodified	_RYFPTQALNF_					0	0	0		ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.8251953125	2	628.824755	1255.63496	0.35393	0.00022256	-0.82671	-0.00051985	-0.47277	-0.00029729	628.8245995633408	64.006	0.53525	64.006	63.793	64.328	0					50	18	4	0	0	0	0.21799	2	14565	14565;14612		31.636	14.193	1	320470			18132	345	12042	12158	24297;24298	24297					0.017365057716460797
RYFPTQALNF	10	Unmodified	_RYFPTQALNF_					0	0	0		ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.824951171875	2	628.824755	1255.63496	0.4484	0.00028197	-1.5408	-0.00096891	-1.0924	-0.00068695	628.8243531548583	63.927	0.67016	63.998	63.76	64.43	0.071018					55	22	4	0	0	0	0.086038	2	14431	14382;14431		47.732	31.583	1	256260			18133	345	12042	12158	24299;24300	24300					0.017365057716460797
RYFTAYTEN	9	Unmodified	_RYFTAYTEN_					0	0	0		ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016602|ENST00000370563|CLCA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.76953125	2	582.769645	1163.52474	-0.048834	-2.8459E-05	0.010177	5.9308E-06	-0.038657	-2.2528E-05	582.7695857805016	45.149	1.1223	45.149	44.717	45.84	0					92	39	3	0	0	0	0.24021	1	8809	8809		13.906	13.906	1	395890			18134	463	12043	12159	24301	24301					-0.0504833928739572
RYFWGWLN	8	Unmodified	_RYFWGWLN_					0	0	0		nc|ENSG00000125375|Q99766-3|DMAC2L;nc|ENSG00000125375|Q99766-2|DMAC2L;ENST00000557421.5_1_14:50779073-50792346:+|nuORF;ENST00000555939.5_1_14:50779073-50791268:+|nuORF;ENSG00000125375|ENST00000557421|DMAC2L;ENST00000554438.5_1_14:50779073-50792438:+|nuORF	nc|ENSG00000125375|Q99766-3|DMAC2L	nc|ENSG00000125375|Q99766-3|DMAC2L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2950439453125	2	571.282526	1140.5505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.18	1	36.262	35.762	36.762	0.081715								0	0	0	0.38822	1	6020	6020		0.69038	0	1				18135	2289	12044	12160	24302	24302					-0.01415400254427368
RYFYLLENL	9	Unmodified	_RYFYLLENL_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.8533935546875	2	615.829506	1229.64446	-0.023835	-1.4678E-05	0.059182	3.6446E-05	0.035347	2.1768E-05	615.8295374271614	74.869	0.44441	74.916	74.645	75.089	0.047646					28	15	3	0	0	0	0.1755	1	17715	17715		32.037	0	1	230800			18136	2167	12045	12161	24303	24303					0.03882274057173163
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2143859863281	2	480.214506	958.414459	-0.37747	-0.00018127	0.50857	0.00024422	0.1311	6.2957E-05	480.2147012075677	31.523	0.96835	31.523	31.215	32.183	0					97	41	3	0	0	0	0.13341	2	4740	4740;4786		26.268	5.8145	1	281890			18137	4322	12046	12162	24304;24305	24304					-0.06641139555756581
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2144470214844	2	480.214506	958.414459	-0.33922	-0.0001629	0.56065	0.00026923	0.22143	0.00010633	480.2147256515137	31.437	1.2312	31.511	31.323	32.554	0.07378					112	59	3	0	0	0	0.22083	2	4584	4584;4625		16.149	1.3108	1	299180			18138	4322	12046	12162	24306;24307	24306					-0.06641139555756581
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	480.214506	958.414459	-0.33922	-0.0001629	0.56065	0.00026923	0.22143	0.00010633	480.2147256515137	31.437	1.2312	31.511	31.323	32.554	0.07378	-0.0060557	2.9387E-05	NaN	26.268	112	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299180			18139	4322	12046	12162							-0.06641139555756581
RYGDLVDYL	9	Unmodified	_RYGDLVDYL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.79833984375	2	557.282389	1112.55022	0.62026	0.00034566	-0.3671	-0.00020458	0.25316	0.00014108	557.2821635143218	67.479	0.70966	67.479	67.263	67.973	0					65	27	4	0	0	0	0.10543	1	15627	15627		31.268	2.1868	1	505260			18140	1814	12047	12163	24308	24308					-0.001548647649542545
RYGDLVDYL	9	Unmodified	_RYGDLVDYL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2825927734375	2	557.282389	1112.55022	0.90814	0.00050609	-0.60931	-0.00033956	0.29883	0.00016653	557.2820880491961	67.424	0.78268	67.489	67.264	68.046	0.065071					59	26	3	0	0	0	0.22083	1	15462	15462		16.149	0	1	529840			18141	1814	12047	12163	24309	24309					-0.001548647649542545
RYGEPKNTSC	10	Unmodified	_RYGEPKNTSC_					0	0	0			REV__ENST00000513627.1_1_5:175921035-175923719:+|nuORF	REV__ENST00000513627.1_1_5:175921035-175923719:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.764404296875	2	577.76658	1153.51861	0.28493	0.00016462	-2.4181	-0.0013971	-2.1332	-0.0012325	577.7649979854814	56.108	0.54079	56.175	55.981	56.522	0.066452					36	20	2	0	0	0	0.3016	1	12025	12025		21.537	5.3879	1	677810	+		18142	8733	12048	12164	24310	24310					-0.05201180790550097
RYGLFLGAIF	10	Unmodified	_RYGLFLGAIF_					0	0	0		ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.8291015625	2	578.829309	1155.64407	0.78089	0.000452	-1.9324	-0.0011186	-1.1516	-0.00066655	579.3295905358041	84.3	0.36444	84.3	83.99	84.355	0					31	19	2	0	0	0	0.06954	1	20744	20744		52.268	21.632	1	1218300			18143	1255	12049	12165	24311	24311					0.07246899127994766
RYGLFLGAIF	10	Unmodified	_RYGLFLGAIF_					0	0	0		ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8295288085938	2	578.829309	1155.64407	0.52285	0.00030264	-1.362	-0.00078839	-0.83919	-0.00048575	578.8284465341179	84.169	0.42308	84.191	83.981	84.404	0.021751					44	20	4	0	0	0	0.17902	2	20577	20577;20626		36.127	5.4905	1	919540			18144	1255	12049	12165	24312;24313	24312					0.07246899127994766
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7798461914062	2	539.798206	1077.58186	0.25806	0.0001393	-1.5562	-0.00084001	-1.2981	-0.00070071	539.7983314613087	48.444	1.2929	48.444	48.159	49.452	0					116	44	4	0	0	0	0.24767	1	10095	10095		13.042	0	1	1460300			18145	1605	12050	12166	24314	24314					0.046171279889904326
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.79833984375	2	539.798206	1077.58186	0.55037	0.00029709	-0.14207	-7.669E-05	0.4083	0.0002204	539.798055399808	55.44	0.50525	55.44	55.215	55.72	0					40	17	3	0	0	0	0.029414	1	11975	11975		63.227	28.295	1	318530			18146	1605	12050	12166	24315	24315					0.046171279889904326
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.780517578125	2	539.798206	1077.58186	0.44996	0.00024289	-1.7141	-0.00092527	-1.2641	-0.00068238	539.7982388660286	48.336	1.0032	48.416	48.155	49.159	0.080029					98	34	4	0	0	0	0.28472	1	9896	9896		8.7454	0	1	1097800			18147	1605	12050	12166	24316	24316					0.046171279889904326
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7984619140625	2	539.798206	1077.58186	0.59517	0.00032127	-0.22716	-0.00012262	0.36801	0.00019865	539.7979783883515	55.395	0.43242	55.461	55.242	55.674	0.065128					38	16	3	0	0	0	0.24273	1	11855	11855		13.615	3.5409	1	224260			18148	1605	12050	12166	24317	24317					0.046171279889904326
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7905883789062	2	532.790381	1063.56621	0.22987	0.00012247	-0.21645	-0.00011532	0.013424	7.1522E-06	532.7904961891815	49.208	2.5513	49.208	48.744	51.295	0					235	89	5	0	0	0	0.0034159	4	10091	10041;10091;10135;10197		107.1	49.378	1	3647600			18149	1892	12051	12167	24318;24319;24320;24321	24319					0.036968414719467546
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7906494140625	2	532.790381	1063.56621	0.27397	0.00014597	-0.064986	-3.4624E-05	0.20898	0.00011135	532.7904733160017	49.126	1.8928	49.203	48.78	50.673	0.076607					182	67	4	0	0	0	0.00021732	2	9925	9925;9968		136.39	64.47	1	3126600			18150	1892	12051	12167	24322;24323	24322					0.036968414719467546
RYGPIVDVY	9	Unmodified	_RYGPIVDVY_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2879028320312	2	541.287474	1080.5604	0.60413	0.00032701	-3.2566	-0.0017627	-2.6524	-0.0014357	541.2877908375282	54.219	0.46826	54.219	53.96	54.429	0					22	16	2	0	0	0	0.24767	1	11554	11554		13.042	1.4022	1	91822			18151	3562	12052	12168	24324	24324					0.023337429602634074
RYGPIVDVY	9	Unmodified	_RYGPIVDVY_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2880859375	2	541.287474	1080.5604	0.61611	0.00033349	1.5721	0.00085094	2.1882	0.0011844	541.2894484799848	54.086	0.41868	54.152	53.866	54.285	0.065128					25	15	2	0	0	0	0.24767	1	11414	11414		13.042	0.80181	1	79329			18152	3562	12052	12168	24325	24325					0.023337429602634074
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.798583984375	2	539.798206	1077.58186	0.25806	0.0001393	-1.5562	-0.00084001	-1.2981	-0.00070071	539.7983314613087	48.444	1.2929	48.444	48.159	49.452	0					116	44	4	0	0	0	0.0045978	1	9817	9817		87.258	29.536	1	1460300			18153	2044	12053	12169	24326	24326					0.0461712798901317
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7984008789062	2	539.798206	1077.58186	0.44996	0.00024289	-1.7141	-0.00092527	-1.2641	-0.00068238	539.7982388660286	48.336	1.0032	48.416	48.155	49.159	0.080029					98	34	4	0	0	0	0.0085356	2	9657	9657;9701		71.708	24.114	1	1097800			18154	2044	12053	12169	24327;24328	24327					0.0461712798901317
RYIAQVKHL	9	Unmodified	_RYIAQVKHL_					0	0	0		ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3372802734375	2	564.337833	1126.66111	-0.1021	-5.7621E-05	0.11929	6.7323E-05	0.01719	9.7012E-06	564.337787449117	27.057	0.26384	27.144	26.993	27.257	0.086699					29	17	2	0	0	0	0.3182	1	3302	3302		4.3292	0.73274	1	15997			18155	5904	12054	12170	24329	24329					0.10284819733806216
RYIDNSICGF	10	Unmodified	_RYIDNSICGF_					0	0	0		nc|ENSG00000140876|P0C024-3|NUDT7	nc|ENSG00000140876|P0C024-3|NUDT7	nc|ENSG00000140876|P0C024-3|NUDT7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2803344726562	2	594.279323	1186.54409	0.11206	6.6596E-05	0.2856	0.00016973	0.39766	0.00023632	594.2794783561546	59.964	0.46381	60.036	59.798	60.262	0.072338					22	16	2	0	0	0	0.31595	1	13238	13238		11.495	3.5846	1	114960			18156	7513	12055	12171	24330	24330					-0.041717062681300376
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.848388671875	2	616.848564	1231.68258	-0.33104	-0.0002042	0.0010339	6.3774E-07	-0.33001	-0.00020357	616.8484141735896	49.613	0.68213	49.613	49.394	50.077	0					45	23	3	0	0	0	0.11383	2	10199	10191;10199		38.176	23.337	1	143740			18157	4573	12056	12172	24331;24332	24332					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.5681457519531	3	411.568135	1231.68258	-0.0016068	-6.6131E-07	-0.36503	-0.00015024	-0.36664	-0.0001509	411.56807970817	49.496	2.1625	49.573	49.249	51.411	0.076603					235	79	5	0	0	0	0.01073	4	10041	9992;10041;10086;10134		64.927	47.484	1	5212300			18158	4573	12056	12172	24333;24334;24335;24336	24334					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.8487548828125	2	616.848564	1231.68258	-0.29279	-0.00018061	0.3955	0.00024396	0.10271	6.3355E-05	616.8486978216195	49.504	0.54634	49.58	49.384	49.93	0.076603					42	19	3	0	0	0	0.075576	3	10016	10016;10063;10130		47.594	30.481	1	222540			18159	4573	12056	12172	24337;24338;24339	24337					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.8485717773438	2	616.848564	1231.68258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.803	1	49.876	49.376	50.376	0.07312								0	0	0	0.28418	1	10122	10122		1.6526	0	1				18160	4573	12056	12172	24340	24340					0.07600204762502472
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	460.5909729003906	3	460.59094	1378.75099	0.5168	0.00023803	-0.52212	-0.00024048	-0.005318	-2.4494E-06	460.59093308767206	60.708	2.6064	60.708	60.363	62.969	0					262	107	6	0	0	0	0.14608	7	13531	13531;13574;13616;13667;13716;13758;13805		39.923	25.752	1	15137000			18161	4573	12057	12173	24341;24342;24343;24344;24345;24346;24347	24341					0.07676449342352498
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	460.5907287597656	3	460.59094	1378.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.602	1	61.602	61.102	62.102	0								0	0	0	0.21436	1	13847	13847		28.181	10.318	1				18162	4573	12057	12173	24348	24348					0.07676449342352498
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	460.59100341796875	3	460.59094	1378.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.757	1	61.757	61.257	62.257	0								0	0	0	0.29794	1	13895	13895		17.863	2.906	1				18163	4573	12057	12173	24349	24349					0.07676449342352498
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	460.5912780761719	3	460.59094	1378.75099	0.092852	4.2767E-05	-0.11409	-5.2548E-05	-0.021236	-9.781E-06	460.5910957011611	60.592	1.9217	60.665	60.066	61.988	0.073421					278	83	6	0	0	0	0.090608	9	13403	13353;13403;13444;13491;13533;13579;13625;13665;13706		46.475	32.305	1	22108000			18164	4573	12057	12173	24350;24351;24352;24353;24354;24355;24356;24357;24358	24351					0.07676449342352498
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3348388671875	2	586.334759	1170.65496	0.45329	0.00026578	0.13037	7.6438E-05	0.58365	0.00034221	586.3345907326828	56.841	1.454	56.841	56.627	58.081	0					108	52	5	0	0	0	0.0020132	2	12431	12381;12431		115.69	60.918	1	1430000			18165	1866	12058	12174	24359;24360	24360					0.07646301502268216
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3347778320312	2	586.334759	1170.65496	0.6959	0.00040803	-0.10036	-5.8846E-05	0.59554	0.00034919	586.3344696297928	56.78	1.1495	56.846	56.6	57.75	0.066452					90	42	5	0	0	0	0.0045534	2	12268	12219;12268		88.954	45.763	1	1323300			18166	1866	12058	12174	24361;24362	24362					0.07646301502268216
RYIHPQQEAF	10	Unmodified	_RYIHPQQEAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3270874023438	2	644.825286	1287.63602	-0.067041	-4.323E-05	0.34814	0.00022449	0.2811	0.00018126	644.825492622083	33.819	0.37328	33.819	33.656	34.029	0					21	13	2	0	0	0	0.45133	2	5420	5420;5468		4.5289	1.7937	1	24599			18167	774	12059	12175	24363;24364	24363					0.003707201405404703
RYIHPQQEAF	10	Unmodified	_RYIHPQQEAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.82568359375	2	644.825286	1287.63602	-0.084698	-5.4615E-05	0.41819	0.00026966	0.33349	0.00021504	644.8254962141942	33.704	0.40487	33.778	33.611	34.016	0.074322					29	17	2	0	0	0	0.46083	2	5256	5256;5298		2.7352	0	1	41206			18168	774	12059	12175	24365;24366	24365					0.003707201405404703
RYIKALETL	9	Unmodified	_RYIKALETL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8319091796875	2	553.832049	1105.64954	-0.016224	-8.9856E-06	-0.29396	-0.00016281	-0.31019	-0.00017179	553.8318416280363	44.163	1.1864	44.163	43.913	45.1	0					104	41	4	0	0	0	0.086078	1	8520	8520		51.415	29.878	1	721140			18169	1805	12060	12176	24367	24367					0.10094577919812764
RYIKALETL	9	Unmodified	_RYIKALETL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.83203125	2	553.832049	1105.64954	0.21368	0.00011834	-0.2229	-0.00012345	-0.0092182	-5.1053E-06	553.831849546389	44.006	0.88827	44.095	43.873	44.761	0.088924					74	30	4	0	0	0	0.048027	1	8352	8352		43.772	18.781	1	612910			18170	1805	12060	12176	24368	24368					0.10094577919812764
RYILEPFFI	9	Unmodified	_RYILEPFFI_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3372192382812	2	599.336967	1196.65938	0.61975	0.00037144	-0.16389	-9.8225E-05	0.45586	0.00027321	599.3368269556106	83.791	0.59371	83.791	83.485	84.079	0					74	19	5	0	0	0	0.010235	3	20618	20576;20618;20665		66.457	38.828	1	3467300			18171	3442	12061	12177	24369;24370;24371	24370					0.0689176592518379
RYILEPFFI	9	Unmodified	_RYILEPFFI_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3372192382812	2	599.336967	1196.65938	0.27114	0.0001625	0.17045	0.00010216	0.44159	0.00026466	599.337021103638	83.744	0.5624	83.766	83.527	84.089	0.021744					74	19	5	0	0	0	0.0081278	3	20461	20412;20461;20503		72.968	44.481	1	3996700			18172	3442	12061	12177	24372;24373;24374	24373					0.0689176592518379
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.2773132324219	2	505.276909	1008.53927	0.085969	4.3438E-05	-0.048275	-2.4392E-05	0.037693	1.9046E-05	505.27714866879813	50.639	3.4647	50.639	50.376	53.841	0					292	125	6	0	0	0	0.0043658	10	10516	10473;10516;10560;10610;10741;10797;10895;11005;11077;11130		96.111	43.843	1	12687000			18173	626	12062	12178	24375;24376;24377;24378;24379;24380;24381;24382;24383;24384	24376					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.2773132324219	2	505.276909	1008.53927	0.22046	0.00011139	-0.17786	-8.9869E-05	0.042601	2.1525E-05	505.27703590395356	50.581	3.0551	50.654	50.385	53.44	0.07312					286	121	5	0	0	0	0.0043658	11	10367	10316;10367;10414;10453;10591;10638;10684;10734;10784;10800;10847		96.111	43.843	1	11278000			18174	626	12062	12178	24385;24386;24387;24388;24389;24390;24391;24392;24393;24394;24395	24386					0.035337776513983954
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.3115234375	2	632.31148	1262.60841	0.058477	3.6975E-05	0.20776	0.00013137	0.26624	0.00016835	632.3115896422071	49.895	1.9093	49.895	49.653	51.562	0					137	66	4	0	0	0	0.0073827	6	10281	10234;10281;10328;10375;10428;10558		80.676	61.419	1	928620			18175	4133	12063	12179	24396;24397;24398;24399;24400;24401	24397					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8767395019531	3	421.876746	1262.60841	0.36886	0.00015561	-0.40885	-0.00017248	-0.039986	-1.6869E-05	421.87654152667596	49.878	2.1607	49.878	49.34	51.501	0					203	75	5	0	0	0	0.40338	4	10289	10242;10289;10381;10434		11.518	2.2741	1	1537200			18176	4133	12063	12179	24402;24403;24404;24405	24403					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.3116455078125	2	632.31148	1262.60841	0.21253	0.00013439	0.085635	5.4148E-05	0.29817	0.00018854	632.311455711376	49.807	0.90454	49.88	49.622	50.526	0.07312					93	31	4	0	0	0	0.00053926	3	10126	10082;10126;10232		100.09	69.454	1	1170700			18177	4133	12063	12179	24406;24407;24408	24407					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.8768310546875	3	421.876746	1262.60841	0.061595	2.5985E-05	0.03538	1.4926E-05	0.096975	4.0911E-05	421.87677428500945	49.809	1.4583	49.882	49.594	51.052	0.07312					148	52	5	0	0	0	0.3639	2	10125	10125;10287		15.739	2.8827	1	2397000			18178	4133	12063	12179	24409;24410	24409					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	421.876746	1262.60841	0.36886	0.00015561	-0.40885	-0.00017248	-0.039986	-1.6869E-05	421.87654152667596	49.878	2.1607	49.878	49.34	51.501	0	-0.002299	-0.00044429	NaN	15.739	203	75	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1537200			18179	4133	12063	12179							-0.012391831196737257
RYKLTFLWP	9	Unmodified	_RYKLTFLWP_					0	0	0		ENST00000371370.7_1_1:54433608-54433665:+|nuORF	ENST00000371370.7_1_1:54433608-54433665:+|nuORF	ENST00000371370.7_1_1:54433608-54433665:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5688781738281	3	408.569365	1222.68626	0.13184	5.3865E-05	-0.83647	-0.00034176	-0.70463	-0.00028789	408.5690117601627	33.273	1.3952	33.273	32.614	34.009	0					97	55	2	0	0	0	0.34197	1	5240	5240		1.1933	0.083588	1	33185			18180	6208	12064	12180	24411	24411					0.08382874536346208
RYKLYQEMF	9	Unmodified	_RYKLYQEMF_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.3208618164062	2	639.320991	1276.62743	0.094959	6.0709E-05	-0.19118	-0.00012222	-0.096217	-6.1514E-05	639.8222556904327	50.702	0.38343	50.702	50.539	50.922	0					21	12	2	0	0	0	0.22083	1	10535	10535		16.149	12.868	1	116680			18181	5272	12065	12181	24412	24412					0.000180301797172433
RYKLYQEMF	9	Unmodified	_RYKLYQEMF_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.3213500976562	2	639.320991	1276.62743	0.22159	0.00014167	-0.17481	-0.00011176	0.046777	2.9905E-05	639.320757576267	50.573	0.52421	50.646	50.5	51.024	0.07312					37	19	3	0	0	0	0.28472	1	10371	10371		8.7454	7.0928	1	142660			18182	5272	12065	12181	24413	24413					0.000180301797172433
RYKPGEPITF	10	Unmodified	_RYKPGEPITF_					0	0	0		DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B	DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant	DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.3275146484375	2	604.327131	1206.63971	0.11163	6.746E-05	-0.067385	-4.0723E-05	0.044243	2.6738E-05	604.326943931338	43.421	0.27665	43.421	43.296	43.572	0					16	9	2	0	0	0	0.43503	1	8327	8327		7.609	3.6646	1	56302			18183	274	12066	12182	24414	24414					0.04465389914412299
RYKPGEPITF	10	Unmodified	_RYKPGEPITF_					0	0	0		DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B	DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant	DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2671508789062	2	604.327131	1206.63971	0.25908	0.00015657	0.58066	0.00035091	0.83973	0.00050747	604.3268472739985	43.286	0.32277	43.375	43.21	43.533	0.089764					19	10	3	0	0	0	0.43503	1	8145	8145		7.609	4.8738	1	44601			18184	274	12066	12182	24415	24415					0.04465389914412299
RYKVFVDLF	9	Unmodified	_RYKVFVDLF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.8347778320312	2	593.834591	1185.65463	0.56797	0.00033728	-0.4681	-0.00027797	0.099879	5.9311E-05	593.8342301807897	64.927	0.92755	64.927	64.688	65.616	0					70	34	3	0	0	0	0.065576	2	14867	14856;14867		39.95	19.496	1	610890			18185	3474	12067	12183	24416;24417	24417					0.06922881782406876
RYKVFVDLF	9	Unmodified	_RYKVFVDLF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.8346557617188	2	593.834591	1185.65463	0.39376	0.00023383	-0.27247	-0.0001618	0.1213	7.203E-05	593.8343618134418	64.84	0.75827	64.909	64.722	65.48	0.068909					56	28	3	0	0	0	0.12214	1	14705	14705		27.629	8.3718	1	530200			18186	3474	12067	12183	24418	24418					0.06922881782406876
RYLADLPTL	9	Unmodified	_RYLADLPTL_					0	0	0		nc|ENSG00000130695|Q6P2H3|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3|CEP85	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3031616210938	2	531.303124	1060.5917	0.57826	0.00030723	-0.21517	-0.00011432	0.36309	0.00019291	531.3029773266383	64.558	1.0701	64.558	64.328	65.398	0					70	38	3	0	0	0	0.023873	2	14788	14737;14788		55.503	13.547	1	685440			18187	2481	12068	12184	24419;24420	24420					0.06382315994369492
RYLADLPTL	9	Unmodified	_RYLADLPTL_					0	0	0		nc|ENSG00000130695|Q6P2H3|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3|CEP85	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3032836914062	2	531.303124	1060.5917	0.54005	0.00028693	-0.23204	-0.00012328	0.30801	0.00016365	531.3028930796709	64.467	0.901	64.536	64.287	65.188	0.068916					71	33	3	0	0	0	0.015341	2	14612	14567;14612		61.602	26.67	1	553990			18188	2481	12068	12184	24421;24422	24422					0.06382315994369492
RYLDASNEL	9	Unmodified	_RYLDASNEL_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7693481445312	2	540.769645	1079.52474	-0.099752	-5.3943E-05	0.39847	0.00021548	0.29872	0.00016154	540.7694401542814	44.05	0.63809	44.05	43.748	44.387	0					33	21	2	0	0	0	0.1019	1	8511	8511		32.037	11.584	1	141260			18189	1864	12069	12185	24423	24423					-0.011843392873743142
RYLDASNEL	9	Unmodified	_RYLDASNEL_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2433471679688	2	540.769645	1079.52474	0.12642	6.8364E-05	-0.41023	-0.00022184	-0.28381	-0.00015348	540.7695356087173	43.969	0.43229	44.058	43.873	44.305	0.088921					22	14	2	0	0	0	0.24942	1	8362	8362		10.151	1.4052	1	97597			18190	1864	12069	12185	24424	24424					-0.011843392873743142
RYLDEINLL	9	Unmodified	_RYLDEINLL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.8198852539062	2	574.819138	1147.62372	0.50445	0.00028997	-0.40519	-0.00023291	0.099258	5.7055E-05	574.8192137769686	69.482	1.3924	69.482	69.191	70.583	0					172	50	5	0	0	0	0.00090591	7	16242	16191;16242;16339;16382;16424;16470;16518		125.04	53.116	1	28784000			18191	643	12070	12186	24425;24426;24427;24428;24429;24430;24431	24426					0.055816836775193224
RYLDEINLL	9	Unmodified	_RYLDEINLL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.81982421875	2	574.819138	1147.62372	0.26527	0.00015248	-0.10164	-5.8426E-05	0.16363	9.4059E-05	574.8193296160093	69.341	1.7716	69.404	69.142	70.914	0.062126					212	70	5	0	0	0	0.002259	8	16064	16010;16064;16113;16155;16195;16236;16278;16325		114.19	42.264	1	33037000			18192	643	12070	12186	24432;24433;24434;24435;24436;24437;24438;24439	24433					0.055816836775193224
RYLDLFTNF	9	Unmodified	_RYLDLFTNF_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.80615234375	2	594.806031	1187.59751	0.24348	0.00014483	0.10012	5.955E-05	0.3436	0.00020438	594.8059495116555	77.483	1.1273	77.483	77.32	78.448	0					101	41	4	0	0	0	0.0043231	2	18723	18676;18723		97.741	72.342	1	2181300			18193	1167	12071	12187	24440;24441	24441					0.011214145060421288
RYLDLFTNF	9	Unmodified	_RYLDLFTNF_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.80615234375	2	594.806031	1187.59751	0.31879	0.00018962	0.013853	8.2399E-06	0.33265	0.00019786	594.8058465307504	77.466	0.9479	77.501	77.342	78.29	0.034485					78	33	4	0	0	0	0.004637	3	18558	18509;18558;18605		85.764	66.402	1	1572400			18194	1167	12071	12187	24442;24443;24444	24443					0.011214145060421288
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.30078125	2	581.300581	1160.58661	0.40054	0.00023283	-0.157	-9.1265E-05	0.24354	0.00014157	581.3005628144512	78.695	2.362	78.695	78.394	80.756	0					225	82	5	0	0	0	0.0011184	8	19066	19023;19066;19119;19173;19225;19273;19324;19346		121.53	75.513	1	17643000			18195	2780	12072	12188	24445;24446;24447;24448;24449;24450;24451;24452	24446					0.012740121317619924
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3009033203125	2	581.300581	1160.58661	0.56253	0.000327	-0.20575	-0.0001196	0.35678	0.0002074	581.3004942915402	78.6	1.6814	78.63	78.428	80.11	0.030151					197	59	5	0	0	0	0.00041987	8	18897	18855;18897;18951;19002;19059;19112;19159;19189		133.05	66.596	1	11858000			18196	2780	12072	12188	24453;24454;24455;24456;24457;24458;24459;24460	24454					0.012740121317619924
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2698974609375	2	581.300581	1160.58661	0.84737	0.00049258	0.016719	9.7186E-06	0.86409	0.0005023	581.3006629634308	80.407	1.1279	80.43	80.157	81.285	0.023605					60	39	2	0	0	0	0.22821	1	19679	19679		19.362	6.3195	1	97892			18197	2780	12072	12188	24461	24461					0.012740121317619924
RYLDLILNDF	10	Unmodified	_RYLDLILNDF_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.345703125	2	641.34552	1280.67649	0.42867	0.00027493	-0.64909	-0.00041629	-0.22042	-0.00014136	641.3455038553496	82.582	0.80565	82.582	82.336	83.141	0					79	27	5	0	0	0	0.0099829	4	20275	20229;20275;20316;20338		76.416	34.104	1	1491600			18198	683	12073	12189	24462;24463;24464;24465	24463					0.04737641740325671
RYLDLILNDF	10	Unmodified	_RYLDLILNDF_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3457641601562	2	641.34552	1280.67649	0.22847	0.00014653	-0.3995	-0.00025622	-0.17103	-0.00010969	641.345616034751	82.6	0.66949	82.622	82.347	83.017	0.021744					78	23	5	0	0	0	0.00073774	4	20108	20037;20061;20108;20163		93.448	41.96	1	1206500			18199	683	12073	12189	24466;24467;24468;24469	24468					0.04737641740325671
RYLDSLKAIVF	11	Unmodified	_RYLDSLKAIVF_					0	0	0		nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN	nc|ENSG00000166451|Q96H22-4|CENPN	nc|ENSG00000166451|Q96H22-4|CENPN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.2587890625	3	442.258967	1323.75507	0.54174	0.00023959	-0.45278	-0.00020025	0.088958	3.9342E-05	442.25868087228366	68.31	0.49016	68.31	68.127	68.617	0					46	16	3	0	0	0	0.38054	2	15920	15873;15920		8.7518	3.3491	1	458980			18200	4159	12074	12190	24470;24471	24471					0.10614494045398715
RYLDSLKAIVF	11	Unmodified	_RYLDSLKAIVF_					0	0	0		nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN	nc|ENSG00000166451|Q96H22-4|CENPN	nc|ENSG00000166451|Q96H22-4|CENPN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.259033203125	3	442.258967	1323.75507	0.31387	0.00013881	-0.12567	-5.5579E-05	0.1882	8.3235E-05	442.25882503146454	68.239	0.69294	68.303	68.129	68.822	0.063507					62	25	4	0	0	0	0.35574	2	15717	15717;15763		11.631	6.2287	1	401930			18201	4159	12074	12190	24472;24473	24472					0.10614494045398715
RYLDVSILGKF	11	Unmodified	_RYLDVSILGKF_					0	0	0		ENSG00000165819|ENST00000298717|METTL3;nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF	ENSG00000165819|ENST00000298717|METTL3	ENSG00000165819|ENST00000298717|METTL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.922119140625	3	437.587084	1309.73942	0.69906	0.0003059	-1.0176	-0.00044531	-0.31859	-0.00013941	437.58669244359356	67.293	0.76019	67.293	67.011	67.771	0					72	28	4	0	0	0	0.26116	5	15556	15556;15608;15620;15656;15711		22.486	12.124	1	274580			18202	4110	12075	12191	24474;24475;24476;24477;24478	24474					0.09694207528355037
RYLDVSILGKF	11	Unmodified	_RYLDVSILGKF_					0	0	0		ENSG00000165819|ENST00000298717|METTL3;nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF	ENSG00000165819|ENST00000298717|METTL3	ENSG00000165819|ENST00000298717|METTL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.58697509765625	3	437.587084	1309.73942	0.59972	0.00026243	-0.8898	-0.00038937	-0.29009	-0.00012694	437.58668738353475	67.223	0.5963	67.288	67.101	67.697	0.065063					55	20	4	0	0	0	0.12686	3	15395	15395;15446;15510		41.567	26.729	1	398420			18203	4110	12075	12191	24479;24480;24481	24479					0.09694207528355037
RYLDWIKKI	9	Unmodified	_RYLDWIKKI_					0	0	0		nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8	nc|ENSG00000129455|O60259-3|KLK8	nc|ENSG00000129455|O60259-3|KLK8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	412.2484130859375	3	412.248403	1233.72338	0.37211	0.0001534	-0.28759	-0.00011856	0.084518	3.4842E-05	412.2482258192623	54.994	1.012	55.059	54.803	55.815	0.065128					111	39	5	0	0	0	0.059161	1	11727	11727		41.347	23.484	1	1679500			18204	2430	12076	12192	24482	24482					0.11586546082116911
RYLECISCGSS	11	Unmodified	_RYLECISCGSS_					0	0	0		ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR;ENSG00000011422|ENST00000340093|PLAUR	ENST00000594364.1_1_19:44156314-44160865:-|nuORF	ENST00000594364.1_1_19:44156314-44160865:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.5144958496094	3	406.514491	1216.52164	0.33029	0.00013427	-0.53854	-0.00021893	-0.20825	-8.4658E-05	406.5143610102588	35.607	0.7938	35.607	35.361	36.155	0					66	29	4	0	0	0	0.38555	1	5962	5962		6.2344	3.1621	1	157280			18205	432	12077	12193	24483	24483					-0.07795673728060137
RYLECISCGSS	11	Unmodified	_RYLECISCGSS_					0	0	0		ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR;ENSG00000011422|ENST00000340093|PLAUR	ENST00000594364.1_1_19:44156314-44160865:-|nuORF	ENST00000594364.1_1_19:44156314-44160865:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.2681884765625	2	609.268098	1216.52164	0.32739	0.00019947	-0.46284	-0.00028199	-0.13545	-8.2522E-05	609.2679510566619	35.519	0.79908	35.597	35.407	36.206	0.078827					69	29	4	0	0	0	0.28838	1	5819	5819		19.362	9.9788	1	245110			18206	432	12077	12193	24484	24484					-0.07795673728060137
RYLECISCGSS	11	Unmodified	_RYLECISCGSS_					0	0	0		ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR;ENSG00000011422|ENST00000340093|PLAUR	ENST00000594364.1_1_19:44156314-44160865:-|nuORF	ENST00000594364.1_1_19:44156314-44160865:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.5144958496094	3	406.514491	1216.52164	-0.039291	-1.5972E-05	0.19693	8.0054E-05	0.15764	6.4082E-05	406.5145847072229	35.528	0.98009	35.607	35.382	36.362	0.078827					52	36	2	0	0	0	0.38555	1	5820	5820		6.2344	1.7055	1	173870			18207	432	12077	12193	24485	24485					-0.07795673728060137
RYLECISCGSS	11	Unmodified	_RYLECISCGSS_					0	0	0		ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR;ENSG00000011422|ENST00000340093|PLAUR	ENST00000594364.1_1_19:44156314-44160865:-|nuORF	ENST00000594364.1_1_19:44156314-44160865:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	609.268098	1216.52164	0.20911	0.0001274	-0.2844	-0.00017327	-0.075291	-4.5873E-05	609.2679612806029	35.583	0.73904	35.583	35.389	36.128	0	-0.0072472	0.00011386	NaN	19.362	79	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252600			18208	432	12077	12193							-0.07795673728060137
RYLEEERP	8	Unmodified	_RYLEEERP_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2776489257812	2	546.277638	1090.54072	-0.099006	-5.4085E-05	0.87216	0.00047644	0.77315	0.00042235	546.2778972704864	31.066	0.48438	31.066	30.928	31.412	0					30	22	2	0	0	0	0.52476	1	4610	4610		9.3831	1.473	1	37037			18209	3978	12078	12194	24486	24486					-0.0009263305048534676
RYLEGTSCI	9	Unmodified	_RYLEGTSCI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2548828125	2	521.255317	1040.49608	-0.183	-9.5392E-05	-0.27253	-0.00014206	-0.45554	-0.00023745	521.2551341178807	44.798	1.6508	44.798	44.359	46.009	0					148	58	4	0	0	0	0.0046221	3	8741	8698;8741;8791		86.332	48.358	1	1308500			18210	5715	12079	12195	24487;24488;24489	24488					-0.022547801881728446
RYLEGTSCI	9	Unmodified	_RYLEGTSCI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.255126953125	2	521.255317	1040.49608	-0.020926	-1.0908E-05	-0.13888	-7.2391E-05	-0.1598	-8.3299E-05	521.2551858629905	44.712	1.7137	44.8	44.447	46.161	0.08754					160	65	4	0	0	0	0.0047429	3	8578	8578;8624;8673		83.429	52.792	1	1109800			18211	5715	12079	12195	24490;24491;24492	24490					-0.022547801881728446
RYLEKFYGL	9	Unmodified	_RYLEKFYGL_					0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.5548706054688	2	594.824224	1187.63389	0.12922	7.6861E-05	0.10636	6.3263E-05	0.23557	0.00014012	594.8240841078765	52.353	0.39304	52.353	52.134	52.527	0					19	13	2	0	0	0	0.33028	1	10998	10998		2.7352	0	1	106650			18212	5722	12080	12196	24493	24493					0.047582914027543666
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(120)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8131713867188	2	597.812999	1193.61144	-0.0021507	-1.2857E-06	0.19658	0.00011752	0.19443	0.00011623	597.8131402849589	34.502	1.2625	34.502	34.274	35.537	0					152	47	5	0	0	0	0.0016629	2	5642	5642;5685		117.84	72.098	1	1461300			18213	4299	12081	12197	24494;24495	24494		259			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(81)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8132934570312	2	597.812999	1193.61144	0.13276	7.9366E-05	0.14288	8.5415E-05	0.27564	0.00016478	597.8131245506268	35.887	4.0088	35.887	35.228	39.237	0					418	149	5	0	0	0	0.0056336	3	6059	6015;6059;6098		80.676	38.72	1	905780			18214	4299	12081	12197	24496;24497;24498	24497		259			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(98)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.813232421875	2	597.812999	1193.61144	-0.035588	-2.1275E-05	0.29847	0.00017843	0.26288	0.00015716	597.8132154564382	34.457	1.0505	34.533	34.249	35.3	0.076244					156	44	5	0	0	0	0.0043231	2	5504	5504;5545		97.741	61.235	1	1792100			18215	4299	12081	12197	24499;24500	24499		259			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(71)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.813232421875	2	597.812999	1193.61144	0.081512	4.8729E-05	0.28944	0.00017303	0.37095	0.00022176	597.8131743705629	35.767	3.3589	35.846	35.169	38.528	0.078831					345	128	4	0	0	0	0.0087877	3	5911	5911;5954;5992		70.929	38.891	1	813900			18216	4299	12081	12197	24501;24502;24503	24501		259			0.022383239428108936
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8148803710938	2	589.815541	1177.61653	-0.45036	-0.00026563	-0.39129	-0.00023079	-0.84165	-0.00049642	589.8152990907986	41.829	2.0636	41.829	41.575	43.638	0					162	73	4	0	0	0	0.0039507	5	7831	7784;7831;7875;7920;7969		103.82	63.874	1	862190			18217	4299	12081	12198	24504;24505;24506;24507;24508	24505					0.03482627805442462
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.815185546875	2	589.815541	1177.61653	-0.20419	-0.00012044	-0.32486	-0.00019161	-0.52906	-0.00031205	589.8153377219525	41.728	1.5607	41.818	41.556	43.116	0.089764					149	60	4	0	0	0	0.0011298	8	7682	7615;7635;7682;7728;7823;7865;7882;7942		121.35	73.597	1	966750			18218	4299	12081	12198	24509;24510;24511;24512;24513;24514;24515;24516	24511					0.03482627805442462
RYLEKSGVL	9	Unmodified	_RYLEKSGVL_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.80859375	2	532.808574	1063.60259	0.11554	6.1559E-05	-0.21023	-0.00011201	-0.094698	-5.0456E-05	532.8083934843659	34.928	0.6945	34.928	34.754	35.449	0					58	24	3	0	0	0	0.15482	2	5785	5744;5785		23.79	4.467	1	209140			18219	5564	12082	12199	24517;24518	24518					0.07333718368658992
RYLEKSGVL	9	Unmodified	_RYLEKSGVL_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.8084716796875	2	532.808574	1063.60259	0.26015	0.00013861	-0.17788	-9.4774E-05	0.082271	4.3835E-05	532.8083820643353	34.854	0.60321	34.931	34.733	35.336	0.076244					53	24	3	0	0	0	0.064247	1	5628	5628		40.239	11.158	1	204710			18220	5564	12082	12199	24519	24519					0.07333718368658992
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000204642|P30511-2|HLA-F;ENSG00000204525|ENST00000376228|HLA-C;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.2192077636719	3	408.21906	1221.63535	0.081971	3.3462E-05	-0.16954	-6.9207E-05	-0.087564	-3.5745E-05	408.21905451937516	31.068	2.5457	31.068	30.832	33.378	0					257	112	5	0	0	0	0.024374	2	4621	4621;4662		64.688	44.277	1	1352100			18221	5489;5476;5532	12083	12200	24520;24521	24520					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000204642|P30511-2|HLA-F;ENSG00000204525|ENST00000376228|HLA-C;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.21923828125	3	408.21906	1221.63535	-0.26865	-0.00010967	0.25625	0.0001046	-0.0124	-5.062E-06	408.21929607332237	31.044	1.1841	31.118	30.868	32.052	0.073782					184	56	5	0	0	0	0.030897	3	4506	4466;4506;4549		62.894	40.785	1	1465300			18222	5489;5476;5532	12083	12200	24522;24523;24524	24523					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000204642|P30511-2|HLA-F;ENSG00000204525|ENST00000376228|HLA-C;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.8250732421875	2	611.824952	1221.63535	-0.13817	-8.4534E-05	0.25304	0.00015481	0.11487	7.028E-05	611.8250549342877	31.055	1.8415	31.129	30.892	32.734	0.07378					205	91	5	0	0	0	0.017177	3	4507	4467;4507;4550		87.123	52.191	1	961580			18223	5489;5476;5532	12083	12200	24525;24526;24527	24526					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000204642|P30511-2|HLA-F;ENSG00000204525|ENST00000376228|HLA-C;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	611.824952	1221.63535	-0.25633	-0.00015683	0.3359	0.00020551	0.079572	4.8684E-05	611.8250886221704	31.09	2.4526	31.09	30.851	33.303	0	-0.019244	5.4419E-05	NaN	87.123	238	108	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910270			18224	5489;5476;5532	12083	12200							0.03339880700855247
RYLENQTFRF	10	Unmodified	_RYLENQTFRF_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.57000732421875	3	458.570204	1372.68878	0.29896	0.00013709	-0.30104	-0.00013805	-0.0020763	-9.5214E-07	458.5701366540145	49.293	0.47864	49.293	49.143	49.621	0					36	16	3	0	0	0	0.44024	1	10112	10112		6.6235	3.7802	1	142180			18225	737	12084	12201	24528	24528					0.0173467820334281
RYLENQTFRF	10	Unmodified	_RYLENQTFRF_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.90460205078125	3	458.570204	1372.68878	0.010481	4.8061E-06	-0.25044	-0.00011485	-0.23996	-0.00011004	458.5701648340957	49.228	0.43049	49.305	49.106	49.536	0.076607					33	15	3	0	0	0	0.45351	1	9965	9965		4.1166	3.3401	1	142480			18226	737	12084	12201	24529	24529					0.0173467820334281
RYLENYDAI	9	Unmodified	_RYLENYDAI_					0	0	0		ENST00000570285.1_1_13:76140977-76197422:+|nuORF;ENST00000563635.5_1_13:76123956-76287321:+|nuORF;ENSG00000118939|ENST00000377595|UCHL3	ENST00000570285.1_1_13:76140977-76197422:+|nuORF	ENST00000570285.1_1_13:76140977-76197422:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7853393554688	2	578.785296	1155.55604	0.25396	0.00014699	1.6212	0.00093835	1.8752	0.0010853	578.7856989418347	49.586	0.68238	49.586	49.223	49.906	0					48	23	3	0	0	0	0.12515	1	10189	10189		27.223	14.983	1	179750			18227	2052	12085	12202	24530	24530					-0.01551766253282949
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3302612304688	2	600.330205	1198.64586	-0.090502	-5.4331E-05	0.10146	6.0907E-05	0.010954	6.5758E-06	600.3302622203663	43.225	2.3021	43.225	42.999	45.301	0					192	81	5	0	0	0	7.2619E-06	6	8284	8234;8284;8329;8378;8547;8664		151.48	95.303	1	1800600			18228	4299	12086	12203	24531;24532;24533;24534;24535;24536	24532					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.330322265625	2	600.330205	1198.64586	-0.021088	-1.266E-05	0.19485	0.00011697	0.17376	0.00010431	600.3303091675328	43.147	1.181	43.237	42.98	44.161	0.089764					117	42	5	0	0	0	7.2619E-06	3	8121	8072;8121;8170		151.48	65.838	1	1690800			18229	4299	12086	12203	24537;24538;24539	24538					0.05447908145947622
RYLETILEI	9	Unmodified	_RYLETILEI_					0	0	0		nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF	nc|ENSG00000249437|Q13075-2|NAIP	nc|ENSG00000249437|Q13075-2|NAIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.3300170898438	2	575.329339	1148.64412	0.39367	0.00022649	0.26455	0.0001522	0.65822	0.00037869	575.329669833893	71.265	0.78358	71.265	71.074	71.858	0					70	27	4	0	0	0	0.0068798	2	16782	16782;16828		76.825	16.751	1	1142100			18230	5678	12087	12204	24540;24541	24540					0.07574854337326542
RYLETILEI	9	Unmodified	_RYLETILEI_					0	0	0		nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF	nc|ENSG00000249437|Q13075-2|NAIP	nc|ENSG00000249437|Q13075-2|NAIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.330078125	2	575.329339	1148.64412	0.44477	0.00025589	0.18749	0.00010787	0.63226	0.00036376	575.3296761451496	71.205	0.65175	71.263	71.056	71.707	0.058586					69	23	4	0	0	0	0.081383	3	16593	16593;16641;16692		36.506	4.5764	1	1072300			18231	5678	12087	12204	24542;24543;24544	24542					0.07574854337326542
RYLGKVLEL	9	Unmodified	_RYLGKVLEL_					0	0	0		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.8347778320312	2	545.834591	1089.65463	0.20142	0.00010994	0.10427	5.6912E-05	0.30568	0.00016685	545.8345821869074	49.074	1.0756	49.074	48.83	49.906	0					75	37	3	0	0	0	0.029291	2	10050	9999;10050		51.63	15.503	1	737640			18232	2568	12088	12205	24545;24546	24546					0.11338881782398857
RYLGKVLEL	9	Unmodified	_RYLGKVLEL_					0	0	0		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.8345947265625	2	545.834591	1089.65463	0.096153	5.2484E-05	0.2052	0.000112	0.30135	0.00016449	545.8346280552103	48.933	0.78765	49.009	48.81	49.597	0.076607					76	28	4	0	0	0	0.015341	2	9842	9842;9892		61.602	19.646	1	594950			18233	2568	12088	12205	24547;24548	24547					0.11338881782398857
RYLGKVLEL	9	Unmodified	_RYLGKVLEL_					0	0	0		ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	ENSG00000132361|ENST00000651024|CLUH	ENSG00000132361|ENST00000651024|CLUH	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	545.834591	1089.65463	0.20142	0.00010994	0.10427	5.6912E-05	0.30568	0.00016685	545.8345821869074	49.074	1.0756	49.074	48.83	49.906	0	0.032113	-4.0785E-05	NaN	61.602	75	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	737640			18234	2568	12088	12205							0.11338881782398857
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5675354003906	3	405.232864	1212.67676	0.55718	0.00022579	-0.39102	-0.00015845	0.16616	6.7334E-05	405.23257955394666	55.978	0.64433	55.978	55.813	56.458	0					51	23	4	0	0	0	0.032232	1	12136	12136		49.527	45.94	1	324290			18235	834	12089	12206	24549	24549					0.07893106250821802
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.345703125	2	607.345658	1212.67676	0.60153	0.00036533	-0.17723	-0.00010764	0.42429	0.00025769	607.3453535898543	56.007	0.34829	56.007	55.813	56.162	0					23	12	3	0	0	0	0.12515	1	12162	12162		36.127	27.534	1	197570			18236	834	12089	12206	24550	24550					0.07893106250821802
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.2329406738281	3	405.232864	1212.67676	0.07569	3.0672E-05	0.15897	6.442E-05	0.23466	9.5092E-05	405.2327651799051	55.978	0.42387	56.043	55.759	56.183	0.065899					42	15	4	0	0	0	0.047066	2	11968	11968;12011		43.982	37.79	1	406740			18237	834	12089	12206	24551;24552	24551					0.07893106250821802
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.2860717773438	2	607.345658	1212.67676	0.61047	0.00037077	-0.85757	-0.00052084	-0.2471	-0.00015008	607.345736641416	55.959	0.30069	56.025	55.842	56.142	0.065289					20	10	3	0	0	0	0.2229	1	11978	11978		19.257	12.534	1	179510			18238	834	12089	12206	24553	24553					0.07893106250821802
RYLLKFEQI	9	Unmodified	_RYLLKFEQI_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.90478515625	3	403.904524	1208.69174	0.61603	0.00024882	-0.45481	-0.0001837	0.16122	6.5117E-05	403.90428202774405	53.69	0.64107	53.69	53.49	54.131	0					49	22	4	0	0	0	0.24914	2	11422	11422;11477		12.873	5.2637	1	203050			18239	7672	12090	12207	24554;24555	24554					0.09574553328161528
RYLLKFEQI	9	Unmodified	_RYLLKFEQI_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.90423583984375	3	403.904524	1208.69174	0.24576	9.9265E-05	-0.1369	-5.5294E-05	0.10886	4.3971E-05	403.9043868084547	53.635	0.58321	53.701	53.534	54.117	0.06543					50	23	3	0	0	0	0.24914	2	11273	11273;11303		12.873	5.2637	1	190580			18240	7672	12090	12207	24556;24557	24556					0.09574553328161528
RYLLTQELL	9	Unmodified	_RYLLTQELL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.8372802734375	2	574.837331	1147.66011	0.64002	0.00036791	-0.49009	-0.00028172	0.14992	8.6182E-05	574.8368903927784	65.444	0.59992	65.444	65.253	65.853	0					43	21	3	0	0	0	0.034744	1	15016	15016		47.732	14.287	1	411320			18241	1364	12091	12208	24558	24558					0.09218560574208823
RYLLTQELL	9	Unmodified	_RYLLTQELL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8377075195312	2	574.837331	1147.66011	0.47465	0.00027285	-0.1829	-0.00010514	0.29175	0.00016771	574.8370945177851	65.389	0.59291	65.458	65.257	65.849	0.068916					48	22	3	0	0	0	0.029489	1	14858	14858		51.488	11.249	1	291690			18242	1364	12091	12208	24559	24559					0.09218560574208823
RYLNEFEEL	9	Unmodified	_RYLNEFEEL_					0	0	0		ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	ENSG00000086232|ENST00000199389|EIF2AK1	ENSG00000086232|ENST00000199389|EIF2AK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.8013305664062	2	606.798403	1211.58225	0.28869	0.00017518	-0.4491	-0.00027252	-0.16041	-9.7339E-05	606.7980782704209	58.882	1.7419	58.882	58.621	60.363	0					181	65	4	0	0	0	0.056368	2	13068	13068;13120		41.956	28.05	1	4308600			18243	976	12092	12209	24560;24561	24560					-0.015074970817977373
RYLNEFEEL	9	Unmodified	_RYLNEFEEL_					0	0	0		ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	ENSG00000086232|ENST00000199389|EIF2AK1	ENSG00000086232|ENST00000199389|EIF2AK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7982788085938	2	606.798403	1211.58225	0.58927	0.00035757	-0.61322	-0.0003721	-0.023943	-1.4529E-05	606.7979452783587	58.788	1.8929	58.859	58.627	60.52	0.070473					181	71	4	0	0	0	0.00066972	7	12866	12824;12866;12971;13024;13077;13114;13146		128.93	76.664	1	3696300			18244	976	12092	12209	24562;24563;24564;24565;24566;24567;24568	24563					-0.015074970817977373
RYLNELKWSF	10	Unmodified	_RYLNELKWSF_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.57537841796875	3	452.575067	1354.70337	0.42144	0.00019073	-0.21799	-9.8656E-05	0.20346	9.2079E-05	452.5749775795502	61.703	0.70935	61.703	61.605	62.314	0					62	31	3	0	0	0	0.096789	3	13869	13869;13922;13977		45.603	34.537	1	552750			18245	3911	12093	12210	24569;24570;24571	24569					0.04020750351492097
RYLNELKWSF	10	Unmodified	_RYLNELKWSF_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.909423828125	3	452.575067	1354.70337	0.19355	8.7598E-05	-0.13758	-6.2266E-05	0.055972	2.5332E-05	452.5749527974537	61.657	0.48333	61.73	61.545	62.029	0.073421					42	27	2	0	0	0	0.021674	3	13697	13697;13701;13753		66.55	47.406	1	624140			18246	3911	12093	12210	24572;24573;24574	24572					0.04020750351492097
RYLNKAFHIW	10	Unmodified	_RYLNKAFHIW_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.915771484375	3	449.915535	1346.72478	0.04055	1.8244E-05	-0.073183	-3.2926E-05	-0.032633	-1.4682E-05	449.91543079665655	49.368	0.57835	49.445	49.216	49.794	0.076607					39	20	3	0	0	0	0.3186	1	9977	9977		20.581	16.464	1	61001			18247	3463	12094	12211	24575	24575					0.0652818017088066
RYLNKSFVL	9	Unmodified	_RYLNKSFVL_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.3320922851562	2	570.332216	1138.64988	0.0085704	4.888E-06	-0.36148	-0.00020617	-0.35291	-0.00020128	570.3319968528242	46.258	0.38087	46.258	46.039	46.42	0					27	12	3	0	0	0	0.20358	2	9161	9161;9221		18.146	6.5061	1	106580			18248	2585	12095	12212	24576;24577	24576					0.08609997639655376
RYLNKSFVL	9	Unmodified	_RYLNKSFVL_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.3323364257812	2	570.332216	1138.64988	0.055707	3.1772E-05	-0.63148	-0.00036015	-0.57577	-0.00032838	570.3315662279741	46.278	0.42655	46.364	46.032	46.459	0.085617					32	14	3	0	0	0	0.17428	2	9007	9007;9063		21.537	10.713	1	113260			18249	2585	12095	12212	24578;24579	24578					0.08609997639655376
RYLPDTLLL	9	Unmodified	_RYLPDTLLL_					0	0	0		ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENSG00000093010|ENST00000361682|COMT	ENSG00000093010|ENST00000361682|COMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3272094726562	2	552.326599	1102.63865	0.63436	0.00035037	-0.17724	-9.7893E-05	0.45712	0.00025248	552.3266212950903	70.285	2.6145	70.285	69.991	72.605	0					242	93	5	0	0	0	0.0081278	5	16485	16439;16485;16531;16573;16620		72.968	16.791	1	16853000			18250	1084	12096	12213	24580;24581;24582;24583;24584	24581					0.09143175545523263
RYLPDTLLL	9	Unmodified	_RYLPDTLLL_					0	0	0		ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENSG00000093010|ENST00000361682|COMT	ENSG00000093010|ENST00000361682|COMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3269653320312	2	552.326599	1102.63865	0.65406	0.00036125	-0.19235	-0.00010624	0.46171	0.00025501	552.3265417118192	70.182	1.9065	70.242	69.94	71.846	0.060562					232	74	5	0	0	0	0.0081278	8	16295	16252;16295;16340;16385;16476;16517;16565;16613		72.968	16.791	1	12379000			18251	1084	12096	12213	24585;24586;24587;24588;24589;24590;24591;24592	24586					0.09143175545523263
RYLPHEELF	9	Unmodified	_RYLPHEELF_					0	0	0		ENSG00000124459|ENST00000269973|ZNF45	ENSG00000124459|ENST00000269973|ZNF45	ENSG00000124459|ENST00000269973|ZNF45	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8777160644531	3	401.876746	1202.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.114	1	25.114	24.614	25.614	0								0	0	0	0.28527	1	2883	2883		1.0715	0.10919	1				18252	2254	12097	12214	24593	24593					0.015208168803155786
RYLPKGFLNQF	11	Unmodified	_RYLPKGFLNQF_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	461.5908203125	3	461.590828	1381.75066	0.38592	0.00017814	-0.3876	-0.00017891	-0.0016792	-7.751E-07	461.5906141657597	58.023	0.44926	58.023	57.768	58.217	0					57	15	4	0	0	0	0.012817	1	12749	12749		72.59	58.371	1	1315300			18253	7557	12098	12215	24594	24594					0.07505029622507209
RYLPKGFLNQF	11	Unmodified	_RYLPKGFLNQF_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	461.5907287597656	3	461.590828	1381.75066	0.1301	6.0054E-05	0.047593	2.1969E-05	0.17769	8.2022E-05	461.5908022823796	57.91	0.77957	57.978	57.752	58.531	0.068371					66	29	4	0	0	0	0.044408	2	12606	12558;12606		59.013	44.795	1	1382000			18254	7557	12098	12215	24595;24596	24596					0.07505029622507209
RYLPQCSYF	9	Unmodified	_RYLPQCSYF_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7789306640625	2	588.778959	1175.54336	0.42443	0.0002499	0.44962	0.00026473	0.87405	0.00051462	588.7789707927104	59.65	0.68467	59.65	59.385	60.069	0					63	26	3	0	0	0	0.03918	3	13209	13209;13259;13316		45.7	27.623	1	389030			18255	2054	12099	12216	24597;24598;24599	24597					-0.03738500917188503
RYLPQCSYF	9	Unmodified	_RYLPQCSYF_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.77978515625	2	588.778959	1175.54336	0.63839	0.00037587	1.4738	0.00086776	2.1122	0.0012436	588.7794582616375	60.186	0.49037	60.186	60.017	60.507	0					29	17	2	0	0	0	0.16392	1	13422	13422		22.736	8.8302	1	158850			18256	2054	12099	12216	24600	24600					-0.03738500917188503
RYLPQCSYF	9	Unmodified	_RYLPQCSYF_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.779052734375	2	588.778959	1175.54336	0.41778	0.00024598	0.56191	0.00033084	0.97969	0.00057682	588.7791754422192	59.491	1.2209	59.563	59.356	60.577	0.072338					90	45	3	0	0	0	0.029291	3	13045	13045;13092;13138		51.63	26.23	1	375770			18257	2054	12099	12216	24601;24602;24603	24601					-0.03738500917188503
RYLPTGSFPF	10	Unmodified	_RYLPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.80908203125	2	592.808574	1183.60259	0.39557	0.0002345	-0.0026317	-1.5601E-06	0.39294	0.00023294	592.808642769291	67.998	2.858	67.998	67.725	70.583	0					289	105	5	0	0	0	4.6019E-05	11	15797	15754;15797;15843;15885;15928;15973;16012;16085;16140;16199;16307		114.19	85.105	1	11296000			18258	7474	12100	12217	24604;24605;24606;24607;24608;24609;24610;24611;24612;24613;24614	24605					0.01813718368634909
RYLPTGSFPF	10	Unmodified	_RYLPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8088989257812	2	592.808574	1183.60259	0.49313	0.00029233	-0.038071	-2.2569E-05	0.45506	0.00026976	592.8086065697788	67.948	2.4466	68.012	67.728	70.175	0.063507					277	93	5	0	0	0	5.0498E-05	11	15678	15587;15635;15678;15722;15768;15817;15864;15898;15952;16026;16145		110.55	79.916	1	13051000			18259	7474	12100	12217	24615;24616;24617;24618;24619;24620;24621;24622;24623;24624;24625	24617					0.01813718368634909
RYLPTGSFPFL	11	Unmodified	_RYLPTGSFPFL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	649.3507080078125	2	649.350606	1296.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.052	1	77.052	76.552	77.552	0								0	0	0	5.6813E-16	1	18563	18563		166.77	135.5	1				18260	7474	12101	12218	24626	24626					0.05018249465547342
RYLPTGSFPFL	11	Unmodified	_RYLPTGSFPFL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	649.3509521484375	2	649.350606	1296.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.22	1	77.22	76.72	77.72	0								0	0	0	0.00087082	1	18615	18615		110.79	83.909	1				18261	7474	12101	12218	24627	24627					0.05018249465547342
RYLPTGSFPFL	11	Unmodified	_RYLPTGSFPFL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	649.3505249023438	2	649.350606	1296.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.075	1	77.11	76.61	77.61	0.034485								0	0	0	7.7229E-11	1	18413	18413		154.75	122.45	1				18262	7474	12101	12218	24628	24628					0.05018249465547342
RYLQDLLAW	9	Unmodified	_RYLQDLLAW_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3209228515625	2	589.321848	1176.62914	0.47661	0.00028088	-2.8689	-0.0016907	-2.3923	-0.0014098	589.3200474134846	76.286	1.2834	76.286	75.948	77.231	0					127	57	4	0	0	0	0.010235	3	18304	18304;18376;18426		66.457	37.375	1	4230700			18263	4738	12102	12219	24629;24630;24631	24629					0.04789407259977452
RYLQDLLAW	9	Unmodified	_RYLQDLLAW_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3200073242188	2	589.321848	1176.62914	0.56531	0.00033315	-2.6895	-0.001585	-2.1242	-0.0012518	589.3201307786073	76.261	1.2404	76.3	76.016	77.256	0.03923					130	52	4	0	0	0	0.020768	3	18126	18117;18126;18165		57.722	30.093	1	4517500			18264	4738	12102	12219	24632;24633;24634	24633					0.04789407259977452
RYLQKIEEF	9	Unmodified	_RYLQKIEEF_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.3319702148438	2	613.332413	1224.65027	-0.42529	-0.00026084	-0.33908	-0.00020797	-0.76437	-0.00046881	613.3320927535256	44.533	0.58634	44.533	44.298	44.884	0					33	20	2	0	0	0	0.22861	2	8645	8645;8702		15.248	10.919	1	103360			18265	495	12103	12220	24635;24636	24635					0.04693372568817722
RYLQKIEEF	9	Unmodified	_RYLQKIEEF_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.3321533203125	2	613.332413	1224.65027	-0.17985	-0.00011031	-0.39405	-0.00024168	-0.57391	-0.00035199	613.3319388459215	44.397	0.5451	44.486	44.216	44.761	0.088924					38	18	3	0	0	0	0.27929	2	8480	8480;8535		9.3831	7.7305	1	109960			18266	495	12103	12220	24637;24638	24637					0.04693372568817722
RYLQKIEEF	9	Unmodified	_RYLQKIEEF_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.2239990234375	3	409.224034	1224.65027	-0.17406	-7.123E-05	-0.16929	-6.9278E-05	-0.34335	-0.00014051	409.2239542147205	44.423	0.66138	44.511	44.245	44.906	0.088207					49	23	3	0	0	0	0.091044	1	8523	8523		26.021	13.148	1	201340			18267	495	12103	12220	24639	24639					0.04693372568817722
RYLQKIEEF	9	Unmodified	_RYLQKIEEF_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	409.224034	1224.65027	0.027314	1.1177E-05	-0.91701	-0.00037526	-0.8897	-0.00036409	409.2236862979582	44.486	0.75452	44.486	44.269	45.024	0	-0.012704	-0.00036155	NaN	26.021	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188430			18268	495	12103	12220							0.04693372568817722
RYLQLQLYL	9	Unmodified	_RYLQLQLYL_					0	0	0		nc|ENSG00000123411|Q9H2S9-2|IKZF4;ENST00000551124.5_1_12:56418779-56429112:+|nuORF	nc|ENSG00000123411|Q9H2S9-2|IKZF4	nc|ENSG00000123411|Q9H2S9-2|IKZF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.9042663574219	3	403.904524	1208.69174	0.24576	9.9265E-05	-0.1369	-5.5294E-05	0.10886	4.3971E-05	403.9043868084547	53.635	0.58321	53.701	53.534	54.117	0.06543					50	23	3	0	0	0	0.31668	1	11336	11336		4.5289	0.33936	1	190580			18269	7101	12104	12221	24640	24640					0.09574553328184265
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM	nc|ENSG00000148175|P27105-2|STOM	nc|ENSG00000148175|P27105-2|STOM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.8220825195312	2	554.821681	1107.62881	0.7294	0.00040469	-0.19305	-0.00010711	0.53635	0.00029758	554.8214891873703	54.717	1.497	54.717	54.538	56.035	0					146	57	4	0	0	0	0.0016755	5	11752	11711;11752;11795;11842;11927		117.76	38.164	1	4114700			18270	3352	12105	12222	24641;24642;24643;24644;24645	24642					0.0792998754011478
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM	nc|ENSG00000148175|P27105-2|STOM	nc|ENSG00000148175|P27105-2|STOM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8218994140625	2	554.821681	1107.62881	0.8465	0.00046966	-0.38045	-0.00021108	0.46605	0.00025858	554.8214050566339	54.719	1.1404	54.784	54.563	55.704	0.065128					123	48	4	0	0	0	0.0016755	3	11618	11573;11618;11664		117.76	44.793	1	3529200			18271	3352	12105	12222	24646;24647;24648	24647					0.0792998754011478
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.8084716796875	2	526.808574	1051.60259	-0.13945	-7.3462E-05	0.047981	2.5277E-05	-0.091466	-4.8185E-05	526.8084662683311	31.028	1.2294	31.028	30.799	32.028	0					117	56	4	0	0	0	0.081383	2	4606	4606;4646		36.506	14.969	1	263180			18272	2457	12106	12223	24649;24650	24649					0.07885718368652306
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.8085327148438	2	526.808574	1051.60259	-0.1497	-7.8863E-05	0.13052	6.8759E-05	-0.019181	-1.0105E-05	526.8085505162055	30.986	0.86513	31.06	30.868	31.733	0.073782					98	42	4	0	0	0	0.081383	2	4480	4480;4521		36.506	8.8774	1	251840			18273	2457	12106	12223	24651;24652	24651					0.07885718368652306
RYLSKVLEL	9	Unmodified	_RYLSKVLEL_					0	0	0		nc|nan|Q8WUR7-2|C15orf40;ENSG00000169609|ENST00000304177|C15orf40;nc|nan|Q8WUR7-3|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF	nc|nan|Q8WUR7-2|C15orf40	nc|nan|Q8WUR7-2|C15orf40	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2784423828125	2	560.839874	1119.66519	0.22855	0.00012818	-0.1311	-7.3528E-05	0.097449	5.4653E-05	560.8396960791727	50.96	0.88993	50.96	50.707	51.596	0					58	29	3	0	0	0	0.22247	1	10581	10581		20.415	3.3016	1	230400			18274	4346	12107	12224	24653	24653					0.11014864436833705
RYLSKVLEL	9	Unmodified	_RYLSKVLEL_					0	0	0		nc|nan|Q8WUR7-2|C15orf40;ENSG00000169609|ENST00000304177|C15orf40;nc|nan|Q8WUR7-3|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF	nc|nan|Q8WUR7-2|C15orf40	nc|nan|Q8WUR7-2|C15orf40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8397827148438	2	560.839874	1119.66519	0.39197	0.00021983	-0.43974	-0.00024663	-0.04777	-2.6791E-05	560.8396202063112	50.874	0.73045	50.944	50.694	51.424	0.069878					56	28	3	0	0	0	0.1019	1	10426	10426		32.037	0.76914	1	222470			18275	4346	12107	12224	24654	24654					0.11014864436833705
RYLSPKWIKMF	11	Unmodified	_RYLSPKWIKMF_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF	nc|ENSG00000156976|Q14240-2|EIF4A2	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.774169921875	3	490.275964	1467.80606	0.36521	0.00017906	-0.49357	-0.00024199	-0.12836	-6.2931E-05	490.2757127084646	57.331	0.64539	57.331	57.095	57.74	0					32	22	2	0	0	0	0.30987	1	12551	12551		13.535	11.451	1	106360			18276	7534	12108	12225	24655	24655					0.09087119818582323
RYLSPKWIKMF	11	Unmodified	_RYLSPKWIKMF_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF	nc|ENSG00000156976|Q14240-2|EIF4A2	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7742004394531	3	490.275964	1467.80606	0.3581	0.00017557	-0.089461	-4.3861E-05	0.26864	0.00013171	490.6101391817702	57.161	0.53329	57.229	57.043	57.577	0.068375					45	20	3	0	0	0	0.30302	1	12389	12389		22.109	18.263	1	153790			18277	7534	12108	12225	24656	24656					0.09087119818582323
RYLSPKYIKMF	11	Oxidation (M)	_RYLSPKYIKM(Oxidation (M))F_		RYLSPKYIKM(1)F		RYLSPKYIKM(72)F	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.26953125	3	487.935607	1460.78499	-0.63789	-0.00031125	-0.11254	-5.4913E-05	-0.75044	-0.00036616	487.9355331473662	42.105	1.2568	42.105	41.773	43.03	0					150	43	5	0	0	0	0.013207	2	7932	7893;7932		72.187	58.016	1	744120			18278	3805	12109	12226	24657;24658	24658		237			0.07303109719055101
RYLSPKYIKMF	11	Oxidation (M)	_RYLSPKYIKM(Oxidation (M))F_		RYLSPKYIKM(1)F		RYLSPKYIKM(65)F	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.9352722167969	3	487.935607	1460.78499	-0.28322	-0.00013819	-0.10543	-5.1445E-05	-0.38865	-0.00018964	487.935498273979	43.865	3.0111	43.865	42.829	45.84	0					314	106	5	0	0	0	0.020395	4	8465	8415;8465;8507;8626		64.86	48.022	1	799560			18279	3805	12109	12226	24659;24660;24661;24662	24660		237			0.07303109719055101
RYLSPKYIKMF	11	Oxidation (M)	_RYLSPKYIKM(Oxidation (M))F_		RYLSPKYIKM(1)F		RYLSPKYIKM(80)F	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.9352111816406	3	487.935607	1460.78499	-0.4899	-0.00023904	-0.16553	-8.0766E-05	-0.65543	-0.00031981	487.9355217921156	41.88	1.3586	41.97	41.596	42.955	0.089764					158	52	5	0	0	0	0.0057718	2	7738	7738;7783		79.86	53.739	1	1337400			18280	3805	12109	12226	24663;24664	24663		237			0.07303109719055101
RYLSPKYIKMF	11	Oxidation (M)	_RYLSPKYIKM(Oxidation (M))F_		RYLSPKYIKM(1)F		RYLSPKYIKM(70)F	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.9355163574219	3	487.935607	1460.78499	-0.15089	-7.3627E-05	0.0017505	8.5412E-07	-0.14914	-7.2773E-05	487.93556640351653	43.585	3.513	43.674	42.65	46.163	0.088924					336	131	4	0	0	0	0.014992	5	8274	8181;8228;8274;8321;8375		70.345	55.048	1	899050			18281	3805	12109	12226	24665;24666;24667;24668;24669	24667		237			0.07303109719055101
RYLSPKYIKMF	11	Unmodified	_RYLSPKYIKMF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.6038818359375	3	482.603969	1444.79008	-0.071945	-3.4721E-05	-0.059766	-2.8843E-05	-0.13171	-6.3564E-05	482.60394829435086	49.831	2.24	49.831	49.534	51.774	0					188	77	5	0	0	0	0.013207	5	10238	10238;10291;10337;10384;10597		72.187	66.988	1	687750			18282	3805	12109	12227	24670;24671;24672;24673;24674	24670					0.08547413581686669
RYLSPKYIKMF	11	Unmodified	_RYLSPKYIKMF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.93841552734375	3	482.603969	1444.79008	-0.05059	-2.4415E-05	0.066484	3.2085E-05	0.015894	7.6704E-06	482.6039975607194	49.671	1.5437	49.746	49.51	51.054	0.07497					144	55	5	0	0	0	0.013207	6	10117	10072;10117;10157;10206;10256;10420		100.07	94.543	1	1083900			18283	3805	12109	12227	24675;24676;24677;24678;24679;24680	24676					0.08547413581686669
RYLTAWVIY	9	Unmodified	_RYLTAWVIY_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3214721679688	2	592.826766	1183.63898	0.7553	0.00044776	-1.4015	-0.00083087	-0.64625	-0.00038311	592.825746143743	81.737	0.96444	81.737	81.461	82.426	0					50	33	2	0	0	0	0.22344	1	19968	19968		15.847	0	1	773880	+		18284	8710	12110	12228	24681	24681					0.05450595265369884
RYLTGAWRL	9	Unmodified	_RYLTGAWRL_					0	0	0		ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant;nc|ENSG00000120697|Q9Y673-2|ALG5;ENSG00000120697|ENST00000239891|ALG5	ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant	ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3223266601562	2	568.322183	1134.62981	0.13713	7.7936E-05	-0.080216	-4.5589E-05	0.056916	3.2347E-05	568.3221112459123	50.33	1.3701	50.33	50.105	51.475	0					92	47	3	0	0	0	0.1019	1	10417	10417		32.037	12.78	1	440740			18285	22	12111	12229	24682	24682					0.06788246699693445
RYLTGAWRL	9	Unmodified	_RYLTGAWRL_					0	0	0		ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant;nc|ENSG00000120697|Q9Y673-2|ALG5;ENSG00000120697|ENST00000239891|ALG5	ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant	ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3221435546875	2	568.322183	1134.62981	0.2474	0.00014061	-0.21398	-0.00012161	0.033422	1.8994E-05	568.3219523864773	50.236	1.0384	50.309	50.069	51.108	0.07312					87	37	4	0	0	0	0.11816	2	10282	10237;10282		28.495	12.345	1	604420			18286	22	12111	12229	24683;24684	24684					0.06788246699693445
RYLTRCIRK	9	Unmodified	_RYLTRCIRK_					0	0	0			REV__ENST00000278612.8_1_11:108068056-108093342:-|nuORF	REV__ENST00000278612.8_1_11:108068056-108093342:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.57208251953125	3	403.573003	1207.69718	-0.14558	-5.8753E-05	-2.6881	-0.0010849	-2.8337	-0.0011436	403.5719022217772	39.732	0.555	39.821	39.557	40.112	0.088562					33	20	2	0	0	0	0.33371	1	7071	7071		2.2828	1.3205	1	60629	+		18287	11289	12112	12230	24685	24685					0.1016395363897118
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3009033203125	2	520.300384	1038.58622	0.53647	0.00027912	-0.32815	-0.00017074	0.20832	0.00010839	520.3005588535367	63.832	4.138	63.832	63.531	67.669	0					456	152	5	0	0	0	0.010235	13	14576	14486;14529;14576;14627;14677;14717;14760;14806;14851;14908;15009;15091;15203		66.457	33.19	1	42215000			18288	5147;1434	12113	12231	24686;24687;24688;24689;24690;24691;24692;24693;24694;24695;24696;24697;24698	24688					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.3008422851562	2	520.300384	1038.58622	0.40365	0.00021002	-0.136	-7.0763E-05	0.26765	0.00013926	520.3006235088887	63.707	4.6036	63.778	63.477	68.08	0.071018					448	169	5	0	0	0	0.006264	11	14314	14314;14359;14403;14447;14490;14534;14581;14630;14673;14721;14794		78.728	30.382	1	67987000			18289	5147;1434	12113	12231	24699;24700;24701;24702;24703;24704;24705;24706;24707;24708;24709	24699					0.06846637202556849
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.3060913085938	2	535.305667	1068.59678	0.50316	0.00026934	-0.044232	-2.3678E-05	0.45892	0.00024566	535.3056357853197	62.766	2.5587	62.766	62.473	65.032	0					252	93	5	0	0	0	0.029291	4	14153	14153;14203;14252;14296		51.63	15.503	1	10333000			18290	5708	12114	12232	24710;24711;24712;24713	24710					0.06522619856991696
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.30615234375	2	535.305667	1068.59678	0.62393	0.000334	-0.10613	-5.681E-05	0.51781	0.00027719	535.3055804071988	62.625	2.5886	62.697	62.45	65.038	0.072701					226	96	5	0	0	0	0.020768	5	13996	13996;14038;14080;14117;14266		57.722	21.595	1	9545000			18291	5708	12114	12232	24714;24715;24716;24717;24718	24714					0.06522619856991696
RYLVEVEEL	9	Unmodified	_RYLVEVEEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.3109741210938	2	575.311146	1148.60774	0.47512	0.00027334	-0.21438	-0.00012334	0.26073	0.00015	575.3109420297369	60.336	0.91124	60.336	60.091	61.002	0					68	32	3	0	0	0	0.0046221	4	13434	13434;13486;13539;13571		86.332	40.632	1	729700			18292	1009	12115	12233	24719;24720;24721;24722	24719					0.03937977440614304
RYLVEVEEL	9	Unmodified	_RYLVEVEEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.3115234375	2	575.311146	1148.60774	0.20336	0.000117	-0.064269	-3.6975E-05	0.13909	8.0021E-05	575.3110498177815	60.183	0.75698	60.256	60.094	60.851	0.073421					63	26	3	0	0	0	0.005983	3	13307	13262;13307;13368		79.596	33.897	1	654700			18293	1009	12115	12233	24723;24724;24725	24724					0.03937977440614304
RYLVISEKL	9	Unmodified	_RYLVISEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8399047851562	2	560.839874	1119.66519	0.29363	0.00016468	-0.17597	-9.8691E-05	0.11766	6.5988E-05	560.8397048061794	46.725	2.0381	46.725	46.567	48.605	0					184	79	4	0	0	0	0.00091105	8	9333	9293;9333;9375;9468;9513;9569;9624;9737		124.95	54.621	1	3640900			18294	1950	12116	12234	24726;24727;24728;24729;24730;24731;24732;24733	24727					0.11014864436833705
RYLVISEKL	9	Unmodified	_RYLVISEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8399047851562	2	560.839874	1119.66519	0.32162	0.00018038	-0.15	-8.4127E-05	0.17162	9.6252E-05	560.8397156575539	46.635	1.1201	46.718	46.546	47.666	0.083096					155	54	4	0	0	0	1.9628E-05	4	9173	9134;9173;9222;9381		139.78	57.253	1	3464000			18295	1950	12116	12234	24734;24735;24736;24737	24735					0.11014864436833705
RYLVYAILW	9	Unmodified	_RYLVYAILW_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3025512695312	2	598.844959	1195.67537	0.79677	0.00047714	-0.37466	-0.00022436	0.42211	0.00025278	598.8444621347566	81.22	0.29045	81.22	81.056	81.347	0					15	9	2	0	0	0	0.2446	1	19815	19815		11.64	3.7301	1	115640			18296	5272	12117	12235	24738	24738					0.08535472162066071
RYLWATVTI	9	Unmodified	_RYLWATVTI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8191528320312	2	561.818941	1121.62333	0.54797	0.00030786	0.034883	1.9598E-05	0.58285	0.00032746	561.8188677272005	69.483	1.5175	69.483	69.269	70.786	0					125	54	4	0	0	0	0.005983	3	16234	16234;16282;16328		79.596	20.917	1	2840300			18297	698	12118	12236	24739;24740;24741	24739					0.06738308748322197
RYLWATVTI	9	Unmodified	_RYLWATVTI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.819091796875	2	561.818941	1121.62333	0.34083	0.00019148	0.26519	0.00014899	0.60602	0.00034047	561.8190015616079	69.4	0.73966	69.462	69.258	69.997	0.062126					87	26	4	0	0	0	0.0081278	6	16054	16054;16104;16149;16190;16197;16199		72.968	27.833	1	2433600			18298	698	12118	12236	24742;24743;24744;24745;24746;24747	24742					0.06738308748322197
RYLWATVTI	9	Unmodified	_RYLWATVTI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2926025390625	2	561.818941	1121.62333	0.53472	0.00030042	-0.90803	-0.00051015	-0.37331	-0.00020973	561.8184763043583	70.133	0.77551	70.193	69.915	70.691	0.060562					44	32	2	0	0	0	0.25376	1	16240	16240		6.2058	0.47393	1	133370			18299	698	12118	12236	24748	24748					0.06738308748322197
RYMEVSGNL	9	Oxidation (M)	_RYM(Oxidation (M))EVSGNL_		RYM(1)EVSGNL		RYM(50)EVSGNL	0	0	1		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.757568359375	2	542.758223	1083.50189	0.071853	3.8999E-05	0.014531	7.8866E-06	0.086384	4.6885E-05	542.7581825867617	34.518	1.0617	34.518	34.356	35.417	0					61	39	2	0	0	0	0.032232	1	5622	5622		49.527	16.082	1	353990			18300	4922	12119	12237	24749	24749		284			-0.03651681676501539
RYMEVSGNL	9	Oxidation (M)	_RYM(Oxidation (M))EVSGNL_		RYM(1)EVSGNL		RYM(42)EVSGNL	0	0	1		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7582397460938	2	542.758223	1083.50189	0.22555	0.00012242	-2.3185	-0.0012584	-2.0929	-0.0011359	542.7580468104546	36.328	1.9449	36.328	35.892	37.837	0					200	73	5	0	0	0	0.054729	1	6213	6213		42.312	15.089	1	231300			18301	4922	12119	12237	24750	24750		284			-0.03651681676501539
RYMEVSGNL	9	Oxidation (M)	_RYM(Oxidation (M))EVSGNL_		RYM(1)EVSGNL		RYM(50)EVSGNL	0	0	1		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.75830078125	2	542.758223	1083.50189	0.1513	8.2118E-05	-0.19281	-0.00010465	-0.041509	-2.253E-05	542.7581803813388	34.468	0.78356	34.544	34.336	35.12	0.076244					81	34	3	0	0	0	0.032232	1	5520	5520		49.527	16.082	1	308810			18302	4922	12119	12237	24751	24751		284			-0.03651681676501539
RYMVHLLEL	9	Unmodified	_RYMVHLLEL_					0	0	0		nc|ENSG00000137814|Q9NVX0-2|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2	nc|ENSG00000137814|Q9NVX0-2|HAUS2	nc|ENSG00000137814|Q9NVX0-2|HAUS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.3256225585938	2	587.326076	1172.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.324	1	59.397	58.897	59.897	0.072338								0	0	0	0.23204	1	13017	13017		13.042	3.695	1				18303	2871	12120	12238	24752	24752					0.05818637904985735
RYNERLDRLFI	11	Unmodified	_RYNERLDRLFI_					0	0	0		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2784118652344	3	498.944042	1493.8103	0.32433	0.00016182	-0.35596	-0.00017761	-0.031634	-1.5783E-05	498.94379836791757	51.039	0.46898	51.109	50.936	51.405	0.069878					50	18	4	0	0	0	0.37405	1	10496	10496		9.5301	4.0068	1	154750			18304	2596	12121	12239	24753	24753					0.08314300565871235
RYNESLTNF	9	Unmodified	_RYNESLTNF_					0	0	0		ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8053588867188	2	572.275095	1142.53564	0.027415	1.5689E-05	-0.39264	-0.0002247	-0.36522	-0.00020901	572.2745603695515	46.261	0.43852	46.261	45.981	46.42	0					23	10	3	0	0	0	0.25259	1	9195	9195		7.609	0.88579	1	77388			18305	1793	12122	12240	24754	24754					-0.029929369131195926
RYNESLTNF	9	Unmodified	_RYNESLTNF_					0	0	0		ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.8052978515625	2	572.275095	1142.53564	0.062064	3.5517E-05	0.50727	0.0002903	0.56933	0.00032581	572.2754254056057	46.206	0.33797	46.292	46.055	46.393	0.085617					22	11	3	0	0	0	0.25594	1	9006	9006		4.897	0.95262	1	65132			18306	1793	12122	12240	24755	24755					-0.029929369131195926
RYNGGLLEF	9	Unmodified	_RYNGGLLEF_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.7764282226562	2	534.777274	1067.53999	0.51243	0.00027404	-0.10935	-5.8479E-05	0.40308	0.00021556	534.7769966830342	60.017	1.257	60.017	59.628	60.885	0					71	32	3	0	0	0	0.13166	1	13361	13361		30.637	5.9627	1	497680			18307	5431	12123	12241	24756	24756					0.008925723004722386
RYNGGLLEF	9	Unmodified	_RYNGGLLEF_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7765502929688	2	534.777274	1067.53999	0.41447	0.00022165	-1.0672	-0.00057071	-0.65273	-0.00034906	534.776461185202	59.882	0.50288	59.954	59.779	60.282	0.072338					47	18	3	0	0	0	0.083124	1	13188	13188		36.127	7.6402	1	509210			18308	5431	12123	12241	24757	24757					0.008925723004722386
RYNILLNQL	9	Unmodified	_RYNILLNQL_					0	0	0			REV__ENST00000507091.5_1_4:38627036-38627123:-|nuORF	REV__ENST00000507091.5_1_4:38627036-38627123:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8349609375	2	573.835123	1145.65569	0.17655	0.00010131	-0.097695	-5.6061E-05	0.078851	4.5247E-05	573.8350728668684	49.692	3.2523	49.692	49.422	52.675	0					233	113	5	0	0	0	0.18364	1	10505	10505		20.454	4.3045	1	4648900	+		18309	12231	12124	12242	24758	24758					0.08869096151329359
RYNPNLNTW	9	Unmodified	_RYNPNLNTW_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2567749023438	2	589.291079	1176.56761	0.4648	0.0002739	-1.0677	-0.00062919	-0.60291	-0.00035529	589.291392652467	46.807	0.21718	46.89	46.815	47.032	0.083092					16	8	3	0	0	0	0.24929	1	9216	9216		9.3831	3.6513	1	58096			18310	4745	12125	12243	24759	24759					-0.013615244393122339
RYNPRILFQL	10	Unmodified	_RYNPRILFQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.5908508300781	3	440.59094	1318.75099	0.62297	0.00027447	-0.53391	-0.00023524	0.08906	3.9239E-05	440.5906652317778	60.258	1.0652	60.258	60.069	61.135	0					88	38	3	0	0	0	0.3186	1	13476	13476		20.581	4.3064	1	542890			18311	4047	12126	12244	24760	24760					0.1043644934236454
RYNPRILFQL	10	Unmodified	_RYNPRILFQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.5908508300781	3	440.59094	1318.75099	0.074583	3.2861E-05	0.030209	1.331E-05	0.10479	4.617E-05	440.5908939211032	60.196	0.81267	60.27	60.066	60.879	0.073421					64	28	5	0	0	0	0.3186	3	13308	13258;13308;13360		20.581	4.3064	1	621400			18312	4047	12126	12244	24761;24762;24763	24762					0.1043644934236454
RYNVPFLTF	9	Unmodified	_RYNVPFLTF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.81201171875	2	578.811116	1155.60768	0.42055	0.00024342	0.85183	0.00049305	1.2724	0.00073647	578.8115477991132	76.209	0.24956	76.209	76.081	76.331	0					18	12	2	0	0	0	0.028398	1	18295	18295		52.268	16.224	1	452980			18313	7556	12127	12245	24764	24764					0.03610022231259791
RYNVPFLTF	9	Unmodified	_RYNVPFLTF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8119506835938	2	578.811116	1155.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.1	1	76.139	75.639	76.639	0.03923								0	0	0	0.065902	1	18114	18114		43.858	15.371	1				18314	7556	12127	12245	24765	24765					0.03610022231259791
RYPAIIYNI	9	Unmodified	_RYPAIIYNI_					0	0	0		ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1	ENST00000507477.1_1_17:47780142-47780651:-|nuORF	ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8190307617188	2	561.818941	1121.62333	0.4669	0.00026231	0.3662	0.00020574	0.8331	0.00046805	561.8187870019422	62.946	0.86964	62.946	62.392	63.261	0					70	33	3	0	0	0	0.0569	1	14209	14209		41.84	12.758	1	446810			18315	2145	12128	12246	24766	24766					0.06738308748322197
RYPAIIYNI	9	Unmodified	_RYPAIIYNI_					0	0	0		ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1	ENST00000507477.1_1_17:47780142-47780651:-|nuORF	ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8195190429688	2	561.818941	1121.62333	0.4572	0.00025686	0.26508	0.00014893	0.72228	0.00040579	561.8188633062053	62.902	0.82692	62.975	62.363	63.19	0.072697					73	30	3	0	0	0	0.031665	2	14069	14069;14113		49.933	13.806	1	434360			18316	2145	12128	12246	24767;24768	24767					0.06738308748322197
RYPAVDYNL	9	Unmodified	_RYPAVDYNL_					0	0	0		DLL1|p.V644M|1|0.32|ENSG00000198719|chr6:170283349-170283349|C/T|missense_variant;ENSG00000198719|ENST00000366756|DLL1	DLL1|p.V644M|1|0.32|ENSG00000198719|chr6:170283349-170283349|C/T|missense_variant	DLL1|p.V644M|1|0.32|ENSG00000198719|chr6:170283349-170283349|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2578125	2	555.782556	1109.55056	0.53376	0.00029665	-3.0386	-0.0016888	-2.5049	-0.0013922	555.7821095261702	51.129	0.40017	51.198	50.909	51.31	0.069878					28	15	2	0	0	0	0.2553	1	10478	10478		5.2969	0	1	88232			18317	281	12129	12247	24769	24769					0.00016554954891034868
RYPDIRIE	8	Unmodified	_RYPDIRIE_					0	0	0		ENSG00000198843|ENST00000471696|SELENOT	ENSG00000198843|ENST00000471696|SELENOT	ENSG00000198843|ENST00000471696|SELENOT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2908935546875	2	531.290548	1060.56654	0.53106	0.00028215	1.9552	0.0010388	2.4863	0.0013209	531.2915068277789	63.845	0.89291	63.845	63.592	64.485	0					47	31	2	0	0	0	0.51967	1	14555	14555		10.074	2.1638	1	235940			18318	5417	12130	12248	24770	24770					0.038682611917693066
RYPDNLKHLY	10	Unmodified	_RYPDNLKHLY_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.2349548339844	3	440.234933	1317.68297	0.12841	5.6528E-05	0.10929	4.8114E-05	0.2377	0.00010464	440.23490002618104	36.878	0.60612	36.96	36.765	37.371	0.081715					63	23	4	0	0	0	0.24797	1	6235	6235		28.181	19.895	1	170700			18319	2635	12131	12249	24771	24771					0.0368357969173303
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.26397705078125	3	477.929621	1430.76703	-0.079672	-3.8077E-05	0.23811	0.0001138	0.15844	7.5723E-05	477.9296256630485	46.533	2.6212	46.533	46.237	48.858	0					272	103	4	0	0	0	0.042424	7	9269	9229;9269;9306;9348;9397;9488;9512		59.496	45.278	1	3934300			18320	2635	12132	12250	24772;24773;24774;24775;24776;24777;24778	24773					0.06888110788622726
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.9296569824219	3	477.929621	1430.76703	-0.12212	-5.8363E-05	0.27495	0.00013141	0.15284	7.3045E-05	477.9296816057656	46.389	1.6842	46.475	46.135	47.819	0.085617					209	77	3	0	0	0	0.018604	4	9101	9059;9101;9138;9178		66.617	52.446	1	6299600			18321	2635	12132	12250	24779;24780;24781;24782	24780					0.06888110788622726
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.835205078125	2	573.835123	1145.65569	0.17655	0.00010131	-0.097695	-5.6061E-05	0.078851	4.5247E-05	573.8350728668684	49.692	3.2523	49.692	49.422	52.675	0					233	113	5	0	0	0	0.0011184	8	10213	10170;10213;10254;10300;10354;10435;10567;10627		121.53	85.407	1	4648900			18322	3420	12133	12251	24783;24784;24785;24786;24787;24788;24789;24790	24784					0.08869096151329359
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.835205078125	2	573.835123	1145.65569	0.19145	0.00010986	-0.047295	-2.7139E-05	0.14415	8.272E-05	573.8350966269111	49.625	1.3445	49.702	49.428	50.773	0.076607					155	47	5	0	0	0	0.0028323	7	10069	10025;10069;10116;10156;10202;10296;10356		110.67	74.548	1	3927000			18323	3420	12133	12251	24791;24792;24793;24794;24795;24796;24797	24792					0.08869096151329359
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8351440429688	2	573.835123	1145.65569	0.27063	0.0001553	0.097244	5.5802E-05	0.36787	0.0002111	573.8351284220553	50.981	0.59297	51.051	50.766	51.359	0.069874					29	22	2	0	0	0	0.31389	1	10429	10429		4.897	2.5943	1	55752			18324	3420	12133	12251	24798	24798					0.08869096151329359
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7857666015625	2	581.78563	1161.55671	-0.22753	-0.00013237	0.40838	0.00023759	0.18085	0.00010522	581.7857401207922	40.817	0.72755	40.817	40.53	41.258	0					61	25	3	0	0	0	0.10802	3	7566	7514;7566;7621		30.703	20.63	1	142180			18325	2935	12134	12252	24799;24800;24801	24800					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7857055664062	2	581.78563	1161.55671	0.022551	1.312E-05	0.20803	0.00012103	0.23058	0.00013415	581.785656657003	40.77	0.81912	40.86	40.546	41.365	0.089645					68	30	3	0	0	0	0.12515	3	7395	7331;7395;7441		27.223	17.679	1	147910			18326	2935	12134	12252	24802;24803;24804	24803					-0.017609268135856837
RYPDTIALTF	10	Unmodified	_RYPDTIALTF_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8192749023438	2	598.819138	1195.62372	0.52059	0.00031174	-0.30033	-0.00017984	0.22027	0.0001319	598.8189136884101	67.354	1.0656	67.354	66.955	68.021	0					90	40	4	0	0	0	0.24582	1	15613	15613		43.982	22.392	1	1027800			18327	2867	12135	12253	24805	24805					0.03373683677500594
RYPDTIALTF	10	Unmodified	_RYPDTIALTF_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3206787109375	2	598.819138	1195.62372	0.6694	0.00040085	-0.45675	-0.00027351	0.21265	0.00012734	598.8186964632474	67.301	0.83594	67.366	67.101	67.937	0.065071					76	28	4	0	0	0	0.14333	2	15477	15430;15477		40.239	8.2017	1	1325500			18328	2867	12135	12253	24806;24807	24807					0.03373683677500594
RYPLLLQKI	9	Unmodified	_RYPLLLQKI_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3660278320312	2	572.366059	1142.71756	0.44619	0.00025538	-0.14833	-8.49E-05	0.29786	0.00017049	572.3658855188448	53.883	1.1587	53.883	53.293	54.451	0					106	43	3	0	0	0	0.017478	4	11517	11408;11469;11517;11569		60.074	30.992	1	449290			18329	4907	12136	12254	24808;24809;24810;24811	24810					0.15191447570464334
RYPLLLQKI	9	Unmodified	_RYPLLLQKI_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.365966796875	2	572.366059	1142.71756	0.45467	0.00026024	-0.16142	-9.2394E-05	0.29324	0.00016784	572.365912828571	53.856	1.1575	53.922	53.27	54.427	0.065285					113	49	3	0	0	0	0.02293	5	11343	11239;11295;11343;11375;11394		56.177	22.548	1	336810			18330	4907	12136	12254	24812;24813;24814;24815;24816	24814					0.15191447570464334
RYPNGHFVRNL	11	Unmodified	_RYPNGHFVRNL_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.7076721191406	3	458.245944	1371.716	-0.040525	-1.857E-05	-0.25647	-0.00011752	-0.29699	-0.0001361	458.2457494616234	34.407	0.31816	34.483	34.249	34.567	0.076244					22	12	3	0	0	0	0.31097	1	5506	5506		1.2148	0.76031	1	23133			18331	933	12137	12255	24817	24817					0.04501206534428093
RYPQSIFSTF	10	Unmodified	_RYPQSIFSTF_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.31640625	2	623.316763	1244.61897	0.45822	0.00028561	-0.55688	-0.00034711	-0.098665	-6.15E-05	623.316221512658	66.568	1.2296	66.568	66.168	67.397	0					131	47	4	0	0	0	0.12534	3	15456	15361;15402;15456		42.312	25.572	1	820120			18332	2636	12138	12256	24818;24819;24820	24820					0.006447995347571123
RYPQSIFSTF	10	Unmodified	_RYPQSIFSTF_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.322265625	2	623.316763	1244.61897	0.49847	0.0003107	-0.61915	-0.00038593	-0.12068	-7.5224E-05	623.3162968685969	66.477	1.4384	66.542	66.228	67.666	0.065247					113	52	3	0	0	0	0.23357	2	15253	15210;15253		29.841	17.6	1	659780			18333	2636	12138	12256	24821;24822	24822					0.006447995347571123
RYPSLWRRL	9	Unmodified	_RYPSLWRRL_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2436218261719	3	416.243763	1245.70946	-0.19378	-8.0659E-05	-0.17088	-7.1127E-05	-0.36466	-0.00015179	416.2437220500533	43.502	3.6434	43.591	42.753	46.397	0.088924					422	135	5	0	0	0	0.0087877	14	8187	8045;8090;8140;8187;8233;8273;8312;8361;8408;8453;8496;8541;8580;8675		70.929	52.556	1	2861300			18334	1142	12139	12257	24823;24824;24825;24826;24827;24828;24829;24830;24831;24832;24833;24834;24835;24836	24826					0.09643313373703677
RYPSLWRRL	9	Unmodified	_RYPSLWRRL_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2437438964844	3	416.243763	1245.70946	0.12385	5.1553E-05	-0.18642	-7.7596E-05	-0.062567	-2.6043E-05	416.5780420855531	46.618	1.4153	46.701	46.65	48.065	0.083096					79	58	2	0	0	0	0.31389	1	9202	9202		4.897	1.31	1	194940			18335	1142	12139	12257	24837	24837					0.09643313373703677
RYPSLWRRL	9	Unmodified	_RYPSLWRRL_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2436828613281	3	416.243763	1245.70946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.027	1	46.113	45.613	46.613	0.085617								0	0	0	0.27152	1	8985	8985		4.897	0	1				18336	1142	12139	12257	24838	24838					0.09643313373703677
RYPSNLQLF	9	Unmodified	_RYPSNLQLF_					0	0	0		TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.3055419921875	2	569.306198	1136.59784	0.33031	0.00018805	-0.92616	-0.00052727	-0.59585	-0.00033922	569.3053055930937	61.077	0.78485	61.077	60.749	61.534	0					73	30	3	0	0	0	0.055289	1	13678	13678		61.602	28.816	1	883090			18337	2433	12140	12258	24839	24839					0.035008342259061465
RYPSNLQLF	9	Unmodified	_RYPSNLQLF_					0	0	0		TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.30615234375	2	569.306198	1136.59784	0.22084	0.00012573	-0.28305	-0.00016114	-0.06221	-3.5417E-05	569.305993898271	60.981	0.70602	61.055	60.747	61.453	0.073421					65	24	3	0	0	0	0.055289	1	13494	13494		61.602	28.816	1	921590			18338	2433	12140	12258	24840	24840					0.035008342259061465
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2797546386719	2	504.279649	1006.54475	0.11174	5.6349E-05	-0.083053	-4.1882E-05	0.028688	1.4467E-05	504.27975950167377	50.118	3.472	50.118	49.534	53.006	0					267	121	5	0	0	0	0.0034419	5	10309	10258;10309;10349;10398;10443		106.94	21.299	1	8074200			18339	3560	12141	12259	24841;24842;24843;24844;24845	24842					0.04173456443231771
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.27978515625	2	504.279649	1006.54475	0.201	0.00010136	-0.10181	-5.1339E-05	0.099198	5.0024E-05	504.27967624341966	50.039	2.4114	50.112	49.564	51.975	0.07312					222	88	5	0	0	0	0.0034419	4	10227	10142;10184;10227;10272		106.94	21.299	1	7137400			18340	3560	12141	12259	24846;24847;24848;24849	24848					0.04173456443231771
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.33203125	2	613.332413	1224.65027	0.44774	0.00027461	-0.58891	-0.0003612	-0.14117	-8.6582E-05	613.3319721827435	66.675	2.8302	66.675	66.302	69.132	0					312	107	5	0	0	0	2.3025E-05	1	15411	15411		107.56	59.969	1	9395800			18341	3560	12142	12260	24850	24850					0.04693372568840459
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.33251953125	2	613.332413	1224.65027	0.46054	0.00028246	-0.43489	-0.00026673	0.025654	1.5734E-05	613.3320943145064	66.629	2.4867	66.694	66.337	68.824	0.065071					257	91	5	0	0	0	0.0095751	1	15307	15307		81.915	46.983	1	9802600			18342	3560	12142	12260	24851	24851					0.04693372568840459
RYQALFHDF	9	Unmodified	_RYQALFHDF_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.79638671875	2	598.795998	1195.57744	0.18048	0.00010807	0.36751	0.00022006	0.54798	0.00032813	598.7960678374936	50.75	0.57265	50.75	50.489	51.062	0					64	19	4	0	0	0	0.026209	1	10527	10527		53.833	38.995	1	307760			18343	4608	12143	12261	24852	24852					-0.012523364339131149
RYQALFHDF	9	Unmodified	_RYQALFHDF_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.7962646484375	2	598.795998	1195.57744	0.24953	0.00014942	-0.31123	-0.00018637	-0.061703	-3.6947E-05	598.7958412918989	50.638	0.55212	50.711	50.5	51.052	0.07312					61	20	5	0	0	0	0.07372	1	10362	10362		38.176	25.935	1	314500			18344	4608	12143	12261	24853	24853					-0.012523364339131149
RYQCRECGKA	10	Unmodified	_RYQCRECGKA_					0	0	0		nc|ENSG00000235109|Q96LW9-2|ZSCAN31;ENSG00000235109|ENST00000344279|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.50677490234375	3	405.190342	1212.5492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.4	1	70.4	69.9	70.9	0								0	0	0	0.33755	1	16528	16528		3.0723	0.33707	1				18345	5626	12144	12262	24854	24854					-0.048577256771523025
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3170166015625	2	584.317097	1166.61964	0.53886	0.00031487	-0.11964	-6.991E-05	0.41922	0.00024496	584.3169396755102	47.07	0.54118	47.07	46.858	47.4	0					39	18	3	0	0	0	0.16392	2	9462	9408;9462		22.736	15.127	1	194600			18346	1162	12145	12263	24855;24856	24856					0.04299638974453046
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.31640625	2	584.317097	1166.61964	0.62872	0.00036737	-0.30531	-0.0001784	0.32341	0.00018897	584.3169132116805	46.948	0.53453	47.032	46.762	47.297	0.083096					40	20	3	0	0	0	0.22083	2	9234	9234;9297		16.149	7.9936	1	222630			18347	1162	12145	12263	24857;24858	24857					0.04299638974453046
RYQDIIHSI	9	Unmodified	_RYQDIIHSI_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8090209960938	2	572.809105	1143.60366	0.29336	0.00016804	-0.53802	-0.00030818	-0.24466	-0.00014014	572.8087477424342	47.894	2.2339	47.894	47.53	49.764	0					165	77	5	0	0	0	0.00087611	3	9694	9644;9694;9782		125.53	70.026	1	2351900			18348	407	12146	12264	24859;24860;24861	24860					0.03759932737557392
RYQDIIHSI	9	Unmodified	_RYQDIIHSI_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.8091430664062	2	572.809105	1143.60366	0.51558	0.00029533	-0.70726	-0.00040512	-0.19167	-0.00010979	572.8085828737042	47.806	1.4104	47.886	47.574	48.984	0.080032					127	50	5	0	0	0	0.00015475	5	9519	9474;9519;9597;9633;9680		137.42	87.87	1	2053100			18349	407	12146	12264	24862;24863;24864;24865;24866	24863					0.03759932737557392
RYQEALSEL	9	Unmodified	_RYQEALSEL_					0	0	0		nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-3|C1orf43	nc|nan|Q9BWL3-3|C1orf43	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2578735351562	2	554.785296	1107.55604	0.55045	0.00030538	-1.0804	-0.00059936	-0.5299	-0.00029398	554.7848269574439	47.247	0.67898	47.247	47.028	47.707	0					42	22	3	0	0	0	0.13369	1	9486	9486		40.239	8.9709	1	192000			18350	3172	12147	12265	24867	24867					0.006562337466903045
RYQEALSEL	9	Unmodified	_RYQEALSEL_					0	0	0		nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-3|C1orf43	nc|nan|Q9BWL3-3|C1orf43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7853393554688	2	554.785296	1107.55604	0.60336	0.00033474	-0.559	-0.00031012	0.044361	2.4611E-05	554.7848514167359	47.126	0.45682	47.209	47.032	47.489	0.083096					41	16	4	0	0	0	0.11198	1	9325	9325		29.841	3.5724	1	203310			18351	3172	12147	12265	24868	24868					0.006562337466903045
RYQEKGSQL	9	Unmodified	_RYQEKGSQL_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7884521484375	2	554.790912	1107.56727	0.54552	0.00030265	-2.4027	-0.001333	-1.8572	-0.0010304	554.7890931499965	55.832	0.47174	55.897	55.62	56.092	0.065128					25	16	2	0	0	0	0.23908	1	11940	11940		16.149	2.2431	1	68594			18352	2371	12148	12266	24869	24869					0.017790558408705692
RYQEMIQKL	9	Unmodified	_RYQEMIQKL_					0	0	0		ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5537414550781	3	403.553386	1207.63833	-0.13134	-5.3004E-05	0.25341	0.00010226	0.12207	4.926E-05	403.5536780473143	40.794	0.53254	40.794	40.593	41.126	0					33	18	3	0	0	0	0.287	1	7523	7523		8.4443	0.96724	1	36385			18353	3460	12149	12267	24870	24870					0.04281432554012099
RYQEMIQKL	9	Unmodified	_RYQEMIQKL_					0	0	0		ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.5534362792969	3	403.553386	1207.63833	-0.38414	-0.00015502	0.33533	0.00013532	-0.048808	-1.9697E-05	403.55360544321815	40.65	0.49292	40.74	40.518	41.011	0.089642					30	18	2	0	0	0	0.25517	1	7370	7370		12.175	6.772	1	55443			18354	3460	12149	12267	24871	24871					0.04281432554012099
RYQEVIQEL	9	Unmodified	_RYQEVIQEL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3140869140625	2	589.31422	1176.61389	0.29395	0.00017323	-0.090518	-5.3344E-05	0.20344	0.00011989	589.314193463047	51.507	0.50843	51.507	51.295	51.804	0					28	16	2	0	0	0	0.064247	1	10755	10755		40.239	9.6027	1	251300			18355	782	12150	12268	24872	24872					0.032644956721242124
RYQEVIQEL	9	Unmodified	_RYQEVIQEL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3143310546875	2	589.31422	1176.61389	0.47423	0.00027947	0.20874	0.00012301	0.68297	0.00040248	589.3140559924157	51.425	0.37422	51.495	51.336	51.71	0.069878					36	14	3	0	0	0	0.095436	1	10598	10598		33.445	8.4539	1	208440			18356	782	12150	12268	24873	24873					0.032644956721242124
RYQFLEEAF	9	Unmodified	_RYQFLEEAF_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7958984375	2	601.795663	1201.57677	0.55194	0.00033216	-0.10087	-6.0702E-05	0.45108	0.00027146	601.7956483810764	62.771	1.6328	62.771	62.473	64.106	0					152	60	6	0	0	0	0.0046221	3	14204	14161;14204;14255		86.332	0	1	3287400			18357	5287	12151	12269	24874;24875;24876	24875					-0.01595175873626431
RYQFLEEAF	9	Unmodified	_RYQFLEEAF_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7958984375	2	601.795663	1201.57677	0.50818	0.00030582	-0.13035	-7.8443E-05	0.37783	0.00022738	601.7956224873309	62.628	1.302	62.701	61.797	63.099	0.072701					147	52	6	0	0	0	0.0072241	2	13991	13991;14039		75.761	0	1	3622400			18358	5287	12151	12269	24877;24878	24877					-0.01595175873626431
RYQGVNLYI	9	Unmodified	_RYQGVNLYI_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3067016601562	2	563.306198	1124.59784	0.1914	0.00010782	1.0003	0.00056345	1.1917	0.00067127	563.3065493665529	56.572	0.62059	56.572	56.379	57	0					47	22	3	0	0	0	0.037705	1	12327	12327		46.021	20.622	1	370270			18359	1045	12152	12270	24879	24879					0.0405283422589946
RYQGVNLYI	9	Unmodified	_RYQGVNLYI_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3069458007812	2	563.306198	1124.59784	0.26721	0.00015052	0.67373	0.00037952	0.94093	0.00053003	563.3065164944132	56.476	0.46332	56.543	56.362	56.825	0.066452					38	16	3	0	0	0	0.10067	2	12151	12151;12212		32.305	15.363	1	407210			18360	1045	12152	12270	24880;24881	24880					0.0405283422589946
RYQKGLLHI	9	Unmodified	_RYQKGLLHI_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.337158203125	2	564.337833	1126.66111	-0.1021	-5.7621E-05	0.11929	6.7323E-05	0.01719	9.7012E-06	564.337787449117	27.057	0.26384	27.144	26.993	27.257	0.086699					29	17	2	0	0	0	0.3354	1	3338	3338		2.0598	0	1	15997	+		18361	8234	12153	12271	24882	24882					0.10284819733806216
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203811|ENST00000369158|H3C14;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000188375|ENST00000340398|H3-5;ENSG00000132475|ENST00000254810|H3-3B	ENST00000401004.2_1:120904811-120905087:+|nuORF	ENST00000401004.2_1:120904811-120905087:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.316650390625	2	569.316763	1136.61897	-0.17259	-9.8256E-05	0.13367	7.6101E-05	-0.038915	-2.2155E-05	569.3168279716866	29.932	0.82885	29.932	29.721	30.55	0					99	40	4	0	0	0	0.10543	1	4277	4277		31.268	1.4278	1	146220			18362	2576	12154	12272	24883	24883					0.056127995347424076
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203811|ENST00000369158|H3C14;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000188375|ENST00000340398|H3-5;ENSG00000132475|ENST00000254810|H3-3B	ENST00000401004.2_1:120904811-120905087:+|nuORF	ENST00000401004.2_1:120904811-120905087:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.3161010742188	2	569.316763	1136.61897	-0.12732	-7.2486E-05	0.21384	0.00012174	0.086522	4.9259E-05	569.3168040418157	29.803	0.75608	29.878	29.691	30.447	0.075403					106	46	3	0	0	0	0.3182	1	4078	4078		4.3292	2.2695	1	164410			18363	2576	12154	12272	24884	24884					0.056127995347424076
RYQNLLNEF	9	Unmodified	_RYQNLLNEF_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2431030273438	2	598.806562	1195.59857	0.48991	0.00029336	1.8335	0.0010979	2.3234	0.0013913	598.8068048583556	60.226	0.272	60.226	60.091	60.363	0					14	9	2	0	0	0	0.24683	1	13421	13421		11.495	2.7493	1	94591			18364	5302	12155	12273	24885	24885					0.008596288749458836
RYQQWMERF	9	Unmodified	_RYQQWMERF_					0	0	0		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	448.5487060546875	3	448.548635	1342.62407	0.38331	0.00017193	-0.57524	-0.00025802	-0.19192	-8.6087E-05	448.54839019167974	48.182	1.1179	48.182	47.941	49.059	0					72	38	3	0	0	0	0.11936	2	9751	9751;9809		28.234	20.388	1	269550			18365	317	12156	12274	24886;24887	24886					-0.03353219874293245
RYQQWMERF	9	Unmodified	_RYQQWMERF_					0	0	0		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	448.548828125	3	448.548635	1342.62407	0.32331	0.00014502	-0.34611	-0.00015525	-0.022791	-1.0223E-05	448.54854556199547	48.053	0.97998	48.133	47.924	48.903	0.080029					93	33	4	0	0	0	0.09187	2	9571	9571;9616		34.222	23.156	1	542060			18366	317	12156	12274	24888;24889	24888					-0.03353219874293245
RYQQWMERF	9	Oxidation (M)	_RYQQWM(Oxidation (M))ERF_		RYQQWM(1)ERF		RYQQWM(59)ERF	0	0	1		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.8803405761719	3	453.880273	1358.61899	-0.11886	-5.395E-05	-0.30006	-0.00013619	-0.41893	-0.00019014	453.8803469523618	39.985	1.3817	40.074	39.455	40.836	0.088562					151	52	5	0	0	0	0.018907	1	7157	7157		59.052	39.909	1	474290			18367	317	12156	12275	24890	24890		13			-0.045975237369248134
RYQQWMERF	9	Oxidation (M)	_RYQQWM(Oxidation (M))ERF_		RYQQWM(1)ERF		RYQQWM(59)ERF	0	0	1		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.8796691894531	3	453.880273	1358.61899	-0.43153	-0.00019586	-0.53215	-0.00024153	-0.96368	-0.0004374	453.8800481762906	41.533	4.1898	41.623	40.546	44.736	0.089764					414	157	5	0	0	0	0.018907	4	7637	7591;7637;7683;7729		59.052	47.421	1	1127900			18368	317	12156	12275	24891;24892;24893;24894	24892		13			-0.045975237369248134
RYQTFLQLL	9	Unmodified	_RYQTFLQLL_					0	0	0		ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.33740234375	2	591.337498	1180.66044	0.49851	0.00029479	-0.50706	-0.00029985	-0.0085547	-5.0587E-06	591.3370616563772	75.254	0.53027	75.254	75.058	75.589	0					44	19	3	0	0	0	0.047066	1	18020	18020		43.982	18.991	1	825900			18369	2200	12157	12276	24895	24895					0.0773398029409691
RYQTFLQLL	9	Unmodified	_RYQTFLQLL_					0	0	0		ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.838623046875	2	591.337498	1180.66044	0.45934	0.00027163	-0.57207	-0.00033828	-0.11272	-6.6657E-05	591.3369718918694	75.173	0.48376	75.217	75.085	75.569	0.044037					48	17	4	0	0	0	0.047066	1	17863	17863		43.982	18.991	1	801550			18370	2200	12157	12276	24896	24896					0.0773398029409691
RYQTHDIE	8	Unmodified	_RYQTHDIE_					0	0	0			REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.173583984375	2	531.254163	1060.49377	-0.16296	-8.6572E-05	-0.043452	-2.3084E-05	-0.20641	-0.00010966	531.2540137755822	25.96	0.48697	25.96	25.722	26.209	0					43	36	2	0	0	0	0.3576	1	3147	3147		0.69038	0	1	22476	+		18371	9505	12158	12277	24897	24897					-0.034054926016324316
RYQTQPVTL	9	Unmodified	_RYQTQPVTL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3035278320312	2	553.303655	1104.59276	-0.31641	-0.00017507	-0.10667	-5.902E-05	-0.42308	-0.00023409	553.3035946952361	41.133	1.4833	41.133	40.911	42.395	0					93	53	5	0	0	0	0.029291	2	7642	7642;7688		51.63	18.844	1	1167500			18372	5286	12159	12278	24898;24899	24898					0.044645303632933064
RYQTQPVTL	9	Unmodified	_RYQTQPVTL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3035278320312	2	553.303655	1104.59276	-0.083241	-4.6058E-05	-0.23051	-0.00012754	-0.31375	-0.0001736	553.3035490723365	41.048	0.94218	41.138	40.902	41.844	0.089645					75	36	4	0	0	0	0.07372	2	7491	7491;7535		38.176	11.292	1	970420			18373	5286	12159	12278	24900;24901	24900					0.044645303632933064
RYQWLWEF	8	Unmodified	_RYQWLWEF_					0	0	0			REV__VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant	REV__VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.8697814941406	3	409.869703	1226.58728	0.36433	0.00014933	-0.3048	-0.00012493	0.059527	2.4398E-05	409.8695169495003	59.308	1.1412	59.308	59.01	60.152	0					95	43	3	0	0	0	0.53666	1	13222	13222		3.5965	1.3137	1	247010	+		18374	13329	12160	12279	24902	24902					-0.016951484285755214
RYQWLWEF	8	Unmodified	_RYQWLWEF_					0	0	0			REV__VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant	REV__VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.8692932128906	3	409.869703	1226.58728	0.00060767	2.4907E-07	-0.0084714	-3.4722E-06	-0.0078637	-3.2231E-06	409.8696665960778	59.204	1.4553	59.276	58.971	60.426	0.072338					87	56	3	0	0	0	0.53954	2	12932	12932;12978		1.6526	0	1	409120	+		18375	13329	12160	12279	24903;24904	24903					-0.016951484285755214
RYQWPWEFSM	10	Unmodified	_RYQWPWEFSM_					0	0	0			REV__ENST00000590339.5_1_17:40925499-40925547:+|nuORF	REV__ENST00000590339.5_1_17:40925499-40925547:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2168884277344	3	477.216774	1428.62849	0.17272	8.2423E-05	1.8618	0.00088847	2.0345	0.0009709	477.2175418836526	48.054	0.24038	48.134	48.034	48.274	0.080032					9	8	2	0	0	0	0.47232	1	9603	9603		0.56317	0.10865	1	28120	+		18376	9088	12161	12280	24905	24905					-0.06867755451389712
RYRAKNRSR	9	Unmodified	_RYRAKNRSR_					0	0	0			REV__ENSG00000213085|ENST00000368099|CFAP45	REV__ENSG00000213085|ENST00000368099|CFAP45	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.784423828125	2	603.849961	1205.68537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.95	1	55.015	54.515	55.515	0.065128								0	0	0	0.28724	1	11686	11686		1.6526	0.17072	1		+		18377	10991	12162	12281	24906	24906					0.09075472940025975
RYRDFSLRM	9	Unmodified	_RYRDFSLRM_					0	0	0		ENST00000510757.1_1_5:14387480-14387957:+|nuORF;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO	ENST00000510757.1_1_5:14387480-14387957:+|nuORF	ENST00000510757.1_1_5:14387480-14387957:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.2240905761719	3	415.216997	1242.62916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.329	1	80.353	79.853	80.853	0.023605								0	0	0	0.26267	1	19403	19403		4.1895	0.86986	1				18378	528	12163	12282	24907	24907					0.017550839883142544
RYREPNFT	8	Unmodified	_RYREPNFT_					0	0	0			REV__nc|ENSG00000059377|P24557-4|TBXAS1	REV__nc|ENSG00000059377|P24557-4|TBXAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.305908203125	2	541.772522	1081.53049	0.29055	0.00015741	-1.7758	-0.00096209	-1.4853	-0.00080468	541.7715182903765	48.219	0.52594	48.219	48.018	48.544	0					24	17	2	0	0	0	0.35759	1	9825	9825		13.508	0.97634	1	107170	+		18379	12749	12164	12283	24908	24908					-0.007011959850387939
RYRKFHFWLQF	11	Unmodified	_RYRKFHFWLQF_					0	0	0			REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN	REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.818603515625	3	543.293005	1626.85719	-0.09211	-5.0043E-05	3.6389	0.001977	3.5468	0.001927	543.2953872288684	43.407	0.33943	43.407	43.205	43.544	0					16	11	2	0	0	0	0.31101	1	8324	8324		0.094841	0.011491	1	114390	+		18380	8534	12165	12284	24909	24909					0.06883204907671825
RYRLEVPE	8	Unmodified	_RYRLEVPE_					0	0	0		nc|ENSG00000254521|Q96PQ1-2|SIGLEC12;ENSG00000254521|ENST00000291707|SIGLEC12	nc|ENSG00000254521|Q96PQ1-2|SIGLEC12	nc|ENSG00000254521|Q96PQ1-2|SIGLEC12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2923583984375	2	531.290548	1060.56654	0.53106	0.00028215	1.9552	0.0010388	2.4863	0.0013209	531.2915068277789	63.845	0.89291	63.845	63.592	64.485	0					47	31	2	0	0	0	0.53666	1	14599	14599		3.5965	0	1	235940			18381	7617	12166	12285	24910	24910					0.03868261191814781
RYRPQHIFF	9	Unmodified	_RYRPQHIFF_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;CYB561|p.Y217Tfs*3|1|0.2|ENSG00000008283|chr17:63434509-63434509|A/-|frameshift_variant;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.896240234375	3	421.896363	1262.66726	-0.38533	-0.00016257	0.1675	7.0666E-05	-0.21784	-9.1904E-05	421.8963820382597	42.285	1.6742	42.375	42.094	43.768	0.089764					151	62	4	0	0	0	0.25051	1	7898	7898		4.897	0.70751	1	380960			18382	261	12167	12286	24911	24911					0.04643337965308092
RYRRVRLED	9	Unmodified	_RYRRVRLED_					0	0	0			REV__ENST00000524454.1_1_11:118949894-118952196:+|nuORF	REV__ENST00000524454.1_1_11:118949894-118952196:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5751953125	3	421.57406	1261.70035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.291	1	40.381	39.881	40.881	0.089645								0	0	0	0.2941	1	7254	7254		0.23584	0	1		+		18383	9855	12168	12287	24912	24912					0.07996920017376397
RYSAGWDAKFF	11	Unmodified	_RYSAGWDAKFF_					0	0	0		ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2221374511719	3	449.887533	1346.64077	0.31064	0.00013976	-0.20633	-9.2825E-05	0.10432	4.693E-05	450.2217446163413	56.6	0.54368	56.6	56.404	56.948	0					46	19	3	0	0	0	0.29919	1	12337	12337		18.122	14.005	1	306680			18384	490	12169	12288	24913	24913					-0.018683957167013432
RYSAGWDAKFF	11	Unmodified	_RYSAGWDAKFF_					0	0	0		ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.8876037597656	3	449.887533	1346.64077	0.14862	6.6861E-05	-0.17331	-7.797E-05	-0.024693	-1.1109E-05	449.88737484371654	56.504	0.63249	56.57	56.434	57.066	0.066452					45	22	3	0	0	0	0.13491	1	12174	12174		40.317	30.553	1	250780			18385	490	12169	12288	24914	24914					-0.018683957167013432
RYSEYAEEF	9	Unmodified	_RYSEYAEEF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2590942382812	2	597.259111	1192.50367	-0.29566	-0.00017658	0.28622	0.00017095	-0.0094358	-5.6356E-06	597.2592385739681	45.303	0.48623	45.303	45.1	45.586	0					43	16	3	0	0	0	0.095436	2	8876	8876;8928		33.445	15.299	1	186980			18386	2972	12170	12289	24915;24916	24915					-0.0848834938692562
RYSEYAEEF	9	Unmodified	_RYSEYAEEF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2600708007812	2	597.259111	1192.50367	-0.10708	-6.3955E-05	0.4386	0.00026196	0.33152	0.000198	597.2594028405978	45.22	0.49199	45.308	45.148	45.64	0.087543					44	18	3	0	0	0	0.1019	2	8729	8729;8775		32.037	13.891	1	197970			18387	2972	12170	12289	24917;24918	24917					-0.0848834938692562
RYSGNQVLF	9	Unmodified	_RYSGNQVLF_					0	0	0		nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant;RAPGEF6|p.N120Efs*5|1|0.2|ENSG00000158987|chr5:131548184-131548185|-/C|frameshift_variant;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2830810546875	2	542.282723	1082.55089	0.31475	0.00017069	0.11697	6.3432E-05	0.43173	0.00023412	542.2825905979983	46.847	0.87071	46.847	46.686	47.557	0					58	32	3	0	0	0	0.19398	1	9387	9387		19.257	0	1	373130			18388	3710	12171	12290	24919	24919					0.012919746747684258
RYSGNQVLF	9	Unmodified	_RYSGNQVLF_					0	0	0		nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant;RAPGEF6|p.N120Efs*5|1|0.2|ENSG00000158987|chr5:131548184-131548185|-/C|frameshift_variant;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2825317382812	2	542.282723	1082.55089	0.34048	0.00018463	0.3863	0.00020948	0.72677	0.00039412	542.2827764649278	46.768	0.58604	46.851	46.683	47.269	0.083092					53	25	3	0	0	0	0.20358	1	9190	9190		18.146	1.2041	1	275080			18389	3710	12171	12290	24920	24920					0.012919746747684258
RYSHVAAVL	9	Unmodified	_RYSHVAAVL_					0	0	0		nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2877197265625	2	508.287808	1014.56106	0.16316	8.2934E-05	-0.26097	-0.00013265	-0.097809	-4.9715E-05	508.2876562365134	49.604	1.3167	49.681	49.384	50.701	0.076603					94	46	4	0	0	0	0.21603	1	10087	10087		20.454	0	1	782020			18390	1469	12172	12291	24921	24921					0.054365823999773966
RYSNLILNLF	10	Unmodified	_RYSNLILNLF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.8558959960938	2	626.856055	1251.69756	0.48224	0.00030229	-0.38441	-0.00024097	0.097832	6.1326E-05	626.8559395382673	82.018	0.84113	82.018	81.81	82.651	0					50	29	2	0	0	0	0.12746	1	20051	20051		47.732	17.891	1	2202400			18391	869	12173	12292	24922	24922					0.08177651839832834
RYSNLILNLF	10	Unmodified	_RYSNLILNLF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.8562622070312	2	626.856055	1251.69756	0.36174	0.00022676	-0.24576	-0.00015405	0.11598	7.2705E-05	626.856027840108	82.034	1.0855	82.056	81.846	82.932	0.021866					59	38	2	0	0	0	0.11524	1	19900	19900		42.312	12.472	1	2160100			18392	869	12173	12292	24923	24923					0.08177651839832834
RYSPVLSRF	9	Unmodified	_RYSPVLSRF_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.813720703125	2	562.81419	1123.61383	-0.3312	-0.0001864	0.57793	0.00032527	0.24673	0.00013886	562.8141020440065	42.639	0.72625	42.639	42.423	43.149	0					55	24	3	0	0	0	0.21723	1	8087	8087		16.566	4.3252	1	203680			18393	4173	12174	12293	24924	24924					0.05696540462804478
RYSPVLSRF	9	Unmodified	_RYSPVLSRF_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.81396484375	2	562.81419	1123.61383	-0.15344	-8.6358E-05	0.34904	0.00019644	0.1956	0.00011008	562.8140129303874	42.539	0.57806	42.629	42.461	43.039	0.089764					52	21	3	0	0	0	0.24025	1	7922	7922		16.566	4.9256	1	211230			18394	4173	12174	12293	24925	24925					0.05696540462804478
RYSRSLTIAEF	11	Unmodified	_RYSRSLTIAEF_					0	0	0		ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	448.2417907714844	3	448.241976	1341.7041	0.35694	0.00016	-0.6261	-0.00028065	-0.26916	-0.00012065	448.24163615260136	48.368	0.64193	48.368	48.159	48.801	0					50	21	3	0	0	0	0.38451	1	9819	9819		7.846	2.3228	1	268480			18395	1457	12175	12294	24926	24926					0.04691545000559927
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_		RYSSM(1)AASF		RYSSM(59)AASF	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.2321166992188	2	518.231842	1034.44913	-0.069667	-3.6104E-05	0.42472	0.0002201	0.35505	0.000184	518.2320886731957	32.158	1.8148	32.158	31.676	33.491	0					212	76	5	0	0	0	0.018465	1	4928	4928		59.368	9.4354	1	682750			18396	3821	12176	12295	24927	24927		238			-0.06671639739306556
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_		RYSSM(1)AASF		RYSSM(62)AASF	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.23193359375	2	518.231842	1034.44913	0.074119	3.8411E-05	0.17273	8.9513E-05	0.24685	0.00012792	518.2319437321314	34.155	4.3141	34.155	33.155	37.469	0					310	164	4	0	0	0	0.015341	1	5528	5528		61.602	11.669	1	567540			18397	3821	12176	12295	24928	24928		238			-0.06671639739306556
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_		RYSSM(1)AASF		RYSSM(65)AASF	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.2321166992188	2	518.231842	1034.44913	-0.062068	-3.2166E-05	0.46717	0.0002421	0.4051	0.00020994	518.2321170928881	32.115	1.5564	32.189	31.677	33.233	0.07378					197	74	4	0	0	0	0.010553	2	4745	4745;4797		65.474	15.541	1	699530			18398	3821	12176	12295	24929;24930	24929		238			-0.06671639739306556
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_					0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	518.231842	1034.44913	0.065283	3.3832E-05	0.31065	0.00016099	0.37594	0.00019482	518.2319829125692	34.073	4.2611	34.149	32.893	37.154	0.076244	-0.0029742	6.2006E-05	NaN	61.602	381	174	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565430			18399	3821	12176	12295				238			-0.06671639739306556
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2337646484375	2	510.234384	1018.45422	-0.5399	-0.00027548	-0.33554	-0.00017121	-0.87545	-0.00044668	510.23414205461745	42.017	1.1726	42.017	41.773	42.946	0					97	40	4	0	0	0	0.080641	1	7928	7928		51.63	17.527	1	334090			18400	3821	12176	12296	24931	24931					-0.054273358766863566
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2341003417969	2	510.234384	1018.45422	-0.34068	-0.00017382	-0.44627	-0.0002277	-0.78694	-0.00040153	510.2341765387891	41.98	1.0863	42.07	41.869	42.955	0.089764					84	41	4	0	0	0	0.26104	1	7822	7822		11.495	0.67078	1	348290			18401	3821	12176	12296	24932	24932					-0.054273358766863566
RYSTGLAGNLL	11	Unmodified	_RYSTGLAGNLL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.769775390625	2	582.822212	1163.62987	0.33192	0.00019345	-0.26514	-0.00015453	0.06678	3.8921E-05	582.8219231307269	56.649	0.59607	56.649	56.404	57	0					35	21	3	0	0	0	0.26391	1	12332	12332		28.234	16.739	1	281690			18402	4306	12177	12297	24933	24933					0.054602019090452814
RYSVASFKF	9	Unmodified	_RYSVASFKF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7949829101562	2	552.795466	1103.57638	0.38711	0.00021399	-0.27247	-0.00015062	0.11464	6.3374E-05	552.795135385589	49.757	0.41491	49.83	49.655	50.069	0.07312					24	14	2	0	0	0	0.26705	1	10113	10113		10.8	0.72558	1	130070			18403	4049	12178	12298	24934	24934					0.028734491971817988
RYSVFFQSL	9	Unmodified	_RYSVFFQSL_					0	0	0		ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6	ENST00000497315.5_1_3:64004227-64005057:-|nuORF	ENST00000497315.5_1_3:64004227-64005057:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7973022460938	2	573.800749	1145.58694	0.69247	0.00039734	-4.3288	-0.0024839	-3.6363	-0.0020865	573.798412823051	66.769	1.5167	66.769	66.428	67.944	0					165	58	5	0	0	0	0.0045688	6	15462	15427;15462;15504;15553;15575;15617		88.364	38.431	1	5762700			18404	3931	12179	12299	24935;24936;24937;24938;24939;24940	24936					0.019974318516233325
RYSVFFQSL	9	Unmodified	_RYSVFFQSL_					0	0	0		ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6	ENST00000497315.5_1_3:64004227-64005057:-|nuORF	ENST00000497315.5_1_3:64004227-64005057:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.796630859375	2	573.800749	1145.58694	0.66473	0.00038142	-4.3024	-0.0024687	-3.6377	-0.0020873	573.7982871753643	66.759	1.1282	66.824	66.451	67.58	0.065071					117	41	6	0	0	0	0.0068074	6	15334	15283;15327;15334;15380;15418;15437		77.049	32.117	1	6605200			18405	3931	12179	12299	24941;24942;24943;24944;24945;24946	24943					0.019974318516233325
RYSVFVNEL	9	Unmodified	_RYSVFVNEL_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.798095703125	2	563.798206	1125.58186	0.21364	0.00012045	0.22202	0.00012518	0.43566	0.00024563	563.7983248190769	58.716	0.3422	58.786	58.627	58.969	0.070477					26	11	3	0	0	0	0.10802	1	12844	12844		30.703	12.557	1	173660			18406	2744	12180	12300	24947	24947					0.024091279889944417
RYSVFVNEL	9	Unmodified	_RYSVFVNEL_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	563.798206	1125.58186	-0.10712	-6.0396E-05	0.62286	0.00035117	0.51573	0.00029077	563.7985322377948	58.839	0.4731	58.839	58.506	58.979	0	0.026301	0.00021922	NaN	30.703	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149360			18407	2744	12180	12300							0.024091279889944417
RYTALQAFKF	10	Unmodified	_RYTALQAFKF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.3448486328125	2	622.842948	1243.67134	0.19643	0.00012235	-0.0034122	-2.1253E-06	0.19302	0.00012022	622.8431697365833	55.372	0.36407	55.372	55.215	55.579	0					27	12	3	0	0	0	0.43771	1	11947	11947		7.1017	0	1	135340			18408	486	12181	12301	24948	24948					0.05925382668351631
RYTALQAFKF	10	Unmodified	_RYTALQAFKF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.84423828125	2	622.842948	1243.67134	0.28768	0.00017918	0.085744	5.3405E-05	0.37342	0.00023258	622.8429012907434	55.348	0.35877	55.413	55.216	55.574	0.065132					25	13	3	0	0	0	0.44253	1	11832	11832		6.1918	3.4567	1	141080			18409	486	12181	12301	24949	24949					0.05925382668351631
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.54351806640625	3	405.543655	1213.60914	0.51967	0.00021075	-0.4518	-0.00018322	0.067872	2.7525E-05	405.5434198134764	38.326	1.0613	38.326	38.101	39.162	0					101	38	4	0	0	0	0.24914	2	6823	6772;6823		12.873	12.873	1	315790			18410	624	12182	12302	24950;24951	24951					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.8118896484375	2	607.811845	1213.60914	0.52775	0.00032077	-0.35806	-0.00021763	0.16969	0.00010314	607.8114850588031	38.326	0.76896	38.326	38.101	38.87	0					59	27	4	0	0	0	0.30408	1	6788	6788		5.7319	2.7366	1	94733			18411	624	12182	12302	24952	24952					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5436706542969	3	405.543655	1213.60914	0.15276	6.1951E-05	0.0097392	3.9497E-06	0.1625	6.59E-05	405.54358906738145	38.238	0.9968	38.324	38.073	39.07	0.08688					101	37	5	0	0	0	0.24914	2	6652	6652;6717		12.873	12.873	1	369790			18412	624	12182	12302	24953;24954	24953					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.8120727539062	2	607.811845	1213.60914	0.66292	0.00040293	-0.21829	-0.00013268	0.44464	0.00027026	607.8116196920871	38.228	0.53365	38.315	38.118	38.652	0.08688					44	19	3	0	0	0	0.2779	1	6653	6653		5.7319	3.8876	1	162580			18413	624	12182	12302	24955	24955					0.01087611529374044
RYTFYVLEF	9	Unmodified	_RYTFYVLEF_					0	0	0		nc|ENSG00000142892|Q92643-2|PIGK;ENSG00000142892|ENST00000370812|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.31640625	2	619.316232	1236.61791	-0.16669	-0.00010324	0.1568	9.7112E-05	-0.0098878	-6.1237E-06	619.3163965387087	78.426	1.4139	78.426	78.176	79.59	0					134	48	5	0	0	0	0.013066	4	18995	18947;18995;19043;19153		63.227	26.721	1	3279000			18414	3124	12183	12303	24956;24957;24958;24959	24957					0.009065851658533575
RYTFYVLEF	9	Unmodified	_RYTFYVLEF_					0	0	0		nc|ENSG00000142892|Q92643-2|PIGK;ENSG00000142892|ENST00000370812|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.31640625	2	619.316232	1236.61791	0.072014	4.4599E-05	-0.048584	-3.0089E-05	0.02343	1.451E-05	619.3162724752203	78.356	1.2704	78.386	78.171	79.441	0.030159					123	44	5	0	0	0	0.0045978	3	18828	18783;18828;18871		87.258	35.628	1	3825200			18415	3124	12183	12303	24960;24961;24962	24961					0.009065851658533575
RYTIQLTTL	9	Unmodified	_RYTIQLTTL_					0	0	0		ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-5|SNED1;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.3236694335938	2	554.821681	1107.62881	0.8465	0.00046966	-0.38045	-0.00021108	0.46605	0.00025858	554.8214050566339	54.719	1.1404	54.784	54.563	55.704	0.065128					123	48	4	0	0	0	0.2546	2	11768	11768;11864		12.241	0	1	3529200			18416	3861	12184	12304	24963;24964	24963					0.0792998754011478
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.824462890625	2	574.824755	1147.63496	-0.21406	-0.00012305	0.029585	1.7006E-05	-0.18448	-0.00010604	574.8247478683817	44.982	0.61452	44.982	44.831	45.446	0					58	21	4	0	0	0	0.0072857	3	8796	8796;8847;8858		75.571	50.58	1	334610			18417	2477	12185	12305	24965;24966;24967	24965					0.0670450577167685
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8255004882812	2	574.824755	1147.63496	0.03187	1.832E-05	0.28357	0.000163	0.31544	0.00018132	574.8248573358927	44.914	0.48922	45.001	44.853	45.342	0.08754					41	18	3	0	0	0	0.02143	3	8638	8631;8638;8680		57.249	34.513	1	295740			18418	2477	12185	12305	24968;24969;24970	24969					0.0670450577167685
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7826538085938	2	543.782556	1085.55056	0.42902	0.00023329	0.028951	1.5743E-05	0.45797	0.00024904	543.782477658803	47.238	0.73691	47.238	46.998	47.735	0					70	24	4	0	0	0	0.064059	1	9500	9500		49.554	18.918	1	844650			18419	609	12186	12306	24971	24971					0.011205549548776617
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7825927734375	2	543.782556	1085.55056	0.42296	0.00023	0.042982	2.3373E-05	0.46594	0.00025337	543.782501487183	47.146	0.65897	47.229	47.007	47.666	0.083096					63	25	3	0	0	0	0.22861	1	9379	9379		15.248	3.0078	1	762400			18420	609	12186	12306	24972	24972					0.011205549548776617
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;SWAP70-WEE1|1|fusion;WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7932739257812	2	598.290745	1194.56694	0.13257	7.9316E-05	0.0032475	1.943E-06	0.13582	8.1259E-05	598.2907397187265	38.992	0.71523	38.992	38.802	39.518	0					60	27	4	0	0	0	0.28919	1	7058	7058		8.1555	3.966	1	164150			18421	4162	12187	12307	24973	24973					-0.022563638790188634
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;SWAP70-WEE1|1|fusion;WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.290771484375	2	598.290745	1194.56694	0.17835	0.0001067	0.018087	1.0821E-05	0.19643	0.00011752	598.2907127266775	38.861	0.57564	38.948	38.744	39.32	0.08688					47	22	3	0	0	0	0.24101	1	6821	6821		15.248	5.8654	1	202410			18422	4162	12187	12307	24974	24974					-0.022563638790188634
RYTYSEWHSF	10	Unmodified	_RYTYSEWHSF_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2;ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3	nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.2068786621094	3	459.207043	1374.5993	0.40936	0.00018798	-1.2599	-0.00057854	-0.85051	-0.00039056	459.2065486039025	46.933	0.50394	46.933	46.789	47.293	0					20	17	2	0	0	0	0.44859	1	9403	9403		5.0475	3.8327	1	51762			18423	2684;2687	12188	12308	24975	24975					-0.07301576476015725
RYTYSEWHSF	10	Unmodified	_RYTYSEWHSF_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2;ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3	nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2071533203125	3	459.207043	1374.5993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.807	1	46.89	46.39	47.39	0.083096								0	0	0	0.23205	1	9218	9218		25.997	21.281	1				18424	2684;2687	12188	12308	24976	24976					-0.07301576476015725
RYVDKVSNL	9	Unmodified	_RYVDKVSNL_					0	0	0		ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENST00000481257.5_3_19:36501646-36504244:-|nuORF;ENST00000392183.7_1_19:36501753-36505114:-|nuORF;ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6	ENST00000473572.2_1_19:36501753-36502343:-|nuORF	ENST00000473572.2_1_19:36501753-36502343:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3038330078125	2	547.303655	1092.59276	-0.043467	-2.379E-05	0.0024153	1.3219E-06	-0.041051	-2.2468E-05	547.3035267857545	33.09	0.50485	33.09	32.93	33.434	0					34	19	3	0	0	0	0.32614	1	5241	5241		3.2813	1.2216	1	68472			18425	5640	12189	12309	24977	24977					0.050165303632638825
RYVDKVSNL	9	Unmodified	_RYVDKVSNL_					0	0	0		ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENST00000481257.5_3_19:36501646-36504244:-|nuORF;ENST00000392183.7_1_19:36501753-36505114:-|nuORF;ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6	ENST00000473572.2_1_19:36501753-36502343:-|nuORF	ENST00000473572.2_1_19:36501753-36502343:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3032836914062	2	547.303655	1092.59276	0.014518	7.946E-06	-0.054775	-2.9979E-05	-0.040257	-2.2033E-05	547.303430626744	33.021	0.40987	33.095	32.937	33.347	0.074322					31	16	3	0	0	0	0.31389	1	5066	5066		4.897	0	1	53708			18426	5640	12189	12309	24978	24978					0.050165303632638825
RYVDQVLQL	9	Unmodified	_RYVDQVLQL_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.31884765625	2	567.319306	1132.62406	0.35954	0.00020398	-0.55268	-0.00031354	-0.19313	-0.00010957	567.3190162320951	59.887	0.7492	59.887	59.758	60.507	0					46	26	3	0	0	0	0.088609	1	13371	13371		34.932	9.9411	1	306170			18427	5271	12190	12310	24979	24979					0.06305103397380662
RYVDQVLQL	9	Unmodified	_RYVDQVLQL_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7748413085938	2	567.319306	1132.62406	0.14111	8.0052E-05	0.03601	2.0429E-05	0.17712	0.00010048	567.3192426043067	59.884	0.66214	59.957	59.735	60.397	0.072338					46	24	3	0	0	0	0.16392	1	13202	13202		32.786	11.039	1	308890			18428	5271	12190	12310	24980	24980					0.06305103397380662
RYVEIVSQF	9	Unmodified	_RYVEIVSQF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.805908203125	2	570.806031	1139.59751	0.32478	0.00018539	-0.19678	-0.00011232	0.12801	7.3066E-05	570.805810531788	57.181	0.70705	57.181	56.916	57.623	0					59	23	3	0	0	0	0.0072857	1	12498	12498		75.571	26.016	1	1017500			18429	374	12191	12311	24981	24981					0.0332941450603812
RYVEIVSQF	9	Unmodified	_RYVEIVSQF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8063354492188	2	570.806031	1139.59751	0.39256	0.00022407	-0.29816	-0.00017019	0.094394	5.3881E-05	570.8058443717752	57.134	0.63467	57.202	56.972	57.606	0.068375					66	24	4	0	0	0	0.0072857	2	12334	12334;12386		75.571	25.638	1	847220			18430	374	12191	12311	24982;24983	24982					0.0332941450603812
RYVELAWGF	9	Unmodified	_RYVELAWGF_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.884765625	2	570.795466	1139.57638	0.062553	3.5705E-05	0.61012	0.00034825	0.67267	0.00038396	570.7956838151574	71.956	1.7278	71.956	71.447	73.174	0					179	60	6	0	0	0	0.2094	1	17206	17206		22.736	6.8891	1	2934400			18431	4642	12192	12312	24984	24984					0.012174491971563839
RYVELAWGF	9	Unmodified	_RYVELAWGF_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8844604492188	2	570.795466	1139.57638	0.13377	7.6353E-05	0.55802	0.00031851	0.69178	0.00039487	570.7956860209711	71.787	1.7218	71.843	71.597	73.319	0.055939					172	60	5	0	0	0	0.2094	1	17087	17087		22.736	8.8302	1	3927100			18432	4642	12192	12312	24985	24985					0.012174491971563839
RYVFNLAEL	9	Unmodified	_RYVFNLAEL_					0	0	0		ENST00000560776.1_1_15:59961053-59961500:-|nuORF;ENSG00000140299|ENST00000607373|BNIP2;nc|ENSG00000140299|Q12982-2|BNIP2	ENST00000560776.1_1_15:59961053-59961500:-|nuORF	ENST00000560776.1_1_15:59961053-59961500:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3208618164062	2	562.808574	1123.60259	0.43284	0.00024361	-0.4014	-0.00022591	0.03144	1.7694E-05	562.8084478717825	69.907	0.4492	69.967	69.723	70.172	0.060562					25	18	2	0	0	0	0.2418	1	16199	16199		13.906	3.0821	1	122200			18433	3003	12193	12313	24986	24986					0.04573718368669688
RYVFNLAEL	9	Unmodified	_RYVFNLAEL_					0	0	0		ENST00000560776.1_1_15:59961053-59961500:-|nuORF;ENSG00000140299|ENST00000607373|BNIP2;nc|ENSG00000140299|Q12982-2|BNIP2	ENST00000560776.1_1_15:59961053-59961500:-|nuORF	ENST00000560776.1_1_15:59961053-59961500:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.808574	1123.60259	0.53236	0.00029962	-0.57395	-0.00032302	-0.041584	-2.3404E-05	562.8085240449955	69.918	0.38118	69.918	69.761	70.142	0	-0.024883	-0.0001529	NaN	13.906	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191900			18434	3003	12193	12313							0.04573718368669688
RYVFQSENTF	10	Unmodified	_RYVFQSENTF_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.8091430664062	2	645.809302	1289.60405	0.13657	8.8196E-05	0.17527	0.00011319	0.31184	0.00020139	645.809198592731	51.974	0.84145	51.974	51.774	52.616	0					54	29	3	0	0	0	4.9566E-05	3	10896	10896;10942;10989		111.31	87.519	1	393850			18435	1572	12194	12314	24987;24988;24989	24987					-0.029166923332468286
RYVFQSENTF	10	Unmodified	_RYVFQSENTF_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.8096923828125	2	645.809302	1289.60405	0.15064	9.7287E-05	0.24068	0.00015543	0.39132	0.00025272	645.8093521222175	51.899	0.58997	51.967	51.768	52.358	0.067173					43	21	3	0	0	0	0.016485	2	10735	10735;10782		70.929	55.68	1	334600			18436	1572	12194	12314	24990;24991	24990					-0.029166923332468286
RYVIIPTTF	9	Unmodified	_RYVIIPTTF_					0	0	0		ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3213500976562	2	555.321317	1108.62808	0.92489	0.00051361	-0.44539	-0.00024733	0.4795	0.00026628	555.321034823953	66.377	0.25635	66.377	66.223	66.48	0					16	9	2	0	0	0	0.24021	1	15329	15329		13.906	3.0821	1	76925			18437	3393	12195	12315	24992	24992					0.07811192891063001
RYVIIPTTF	9	Unmodified	_RYVIIPTTF_					0	0	0		ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.32177734375	2	555.321317	1108.62808	0.85952	0.00047731	-0.9959	-0.00055304	-0.13638	-7.5733E-05	555.3204393247564	66.421	0.32251	66.488	66.31	66.632	0.066872					14	11	2	0	0	0	0.20358	1	15169	15169		18.146	7.3224	1	84191			18438	3393	12195	12315	24993	24993					0.07811192891063001
RYVMTTTTL	9	Oxidation (M)	_RYVM(Oxidation (M))TTTTL_		RYVM(1)TTTTL		RYVM(53)TTTTL	0	0	1		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2841796875	2	551.284074	1100.5536	0.36026	0.00019861	-0.24872	-0.00013712	0.11154	6.1489E-05	551.2839846922104	37.231	1.37	37.231	36.962	38.332	0					118	49	4	0	0	0	0.079214	1	6481	6481		53.404	7.6641	1	309870			18439	2643	12196	12316	24994	24994		170			0.007340620173863499
RYVMTTTTL	9	Oxidation (M)	_RYVM(Oxidation (M))TTTTL_		RYVM(1)TTTTL		RYVM(53)TTTTL	0	0	1		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2842407226562	2	551.284074	1100.5536	0.41745	0.00023014	-0.10726	-5.9131E-05	0.31019	0.000171	551.2840481701048	37.096	1.062	37.18	36.922	37.984	0.084476					82	37	4	0	0	0	0.026809	1	6310	6310		53.404	7.6641	1	284660			18440	2643	12196	12316	24995	24995		170			0.007340620173863499
RYVPGLLLSYL	11	Unmodified	_RYVPGLLLSYL_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.8831787109375	2	647.381906	1292.74926	0.60501	0.00039167	-0.36755	-0.00023794	0.23746	0.00015373	647.3815527202445	82.129	0.52249	82.129	81.931	82.454	0					42	18	3	0	0	0	0.08336	2	20109	20109;20168		49.527	34.279	1	322790			18441	3075	12197	12317	24996;24997	24996					0.1145939553377957
RYVPGLLLSYL	11	Unmodified	_RYVPGLLLSYL_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.3814086914062	2	647.381906	1292.74926	0.20237	0.00013101	0.094384	6.1103E-05	0.29676	0.00019212	647.3819180319942	82.195	0.62039	82.217	81.969	82.59	0.021866					45	22	3	0	0	0	0.075607	2	19945	19945;19992		51.415	36.167	1	303710			18442	3075	12197	12317	24998;24999	24998					0.1145939553377957
RYVPRASYF	9	Unmodified	_RYVPRASYF_					0	0	0		ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3	ENSG00000112576|ENST00000372991|CCND3	ENSG00000112576|ENST00000372991|CCND3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.8059692382812	2	579.806365	1157.59818	0.030828	1.7874E-05	-0.42491	-0.00024637	-0.39408	-0.00022849	579.8062080622478	39.64	1.1745	39.64	39.482	40.656	0					92	41	3	0	0	0	0.2546	2	7183	7183;7234		12.241	1.4167	1	157720			18443	1764	12198	12318	25000;25001	25000					0.025682539457420717
RYVPRASYF	9	Unmodified	_RYVPRASYF_					0	0	0		ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3	ENSG00000112576|ENST00000372991|CCND3	ENSG00000112576|ENST00000372991|CCND3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.8064575195312	2	579.806365	1157.59818	0.24727	0.00014337	-0.22237	-0.00012893	0.024895	1.4434E-05	579.806306251134	39.532	0.77927	39.621	39.435	40.214	0.088562					76	30	4	0	0	0	0.22083	1	7007	7007		16.149	7.4037	1	245910			18444	1764	12198	12318	25002	25002					0.025682539457420717
RYVPVGLLERL	11	Unmodified	_RYVPVGLLERL_					0	0	0		ENST00000589085.5_1_19:5785216-5787684:-|nuORF;nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.5337829589844	3	438.934595	1313.78196	0.49719	0.00021824	-0.21576	-9.4703E-05	0.28144	0.00012353	438.93447023743994	61.269	0.3373	61.269	61.11	61.447	0					24	11	3	0	0	0	0.30958	1	13746	13746		16.137	10.939	1	172550			18445	3084	12199	12319	25003	25003					0.13761602656632022
RYVPVGLLERL	11	Unmodified	_RYVPVGLLERL_					0	0	0		ENST00000589085.5_1_19:5785216-5787684:-|nuORF;nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	438.934595	1313.78196	0.1345	5.9035E-05	0.30973	0.00013595	0.44423	0.00019499	439.26898377101867	61.186	0.36109	61.259	61.027	61.388	0.073421	-0.0049973	0.00035496	NaN	16.137	25	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142370			18446	3084	12199	12319							0.13761602656632022
RYVQQLQRL	9	Unmodified	_RYVQQLQRL_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3514404296875	2	602.351471	1202.68839	0.34365	0.000207	0.011109	6.6915E-06	0.35476	0.00021369	602.3513784445686	36.491	0.7258	36.491	36.312	37.038	0					53	27	3	0	0	0	0.10833	1	6234	6234		30.637	18.996	1	117350			18447	615	12200	12320	25004	25004					0.09515303274179132
RYVQQLQRL	9	Unmodified	_RYVQQLQRL_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3519287109375	2	602.351471	1202.68839	0.38767	0.00023351	0.12378	7.4558E-05	0.51144	0.00030807	602.3514893718004	36.421	0.66113	36.502	36.259	36.92	0.081711					62	27	4	0	0	0	0.19398	1	6083	6083		19.257	8.4331	1	158300			18448	615	12200	12320	25005	25005					0.09515303274179132
RYVRKFVLM	9	Unmodified	_RYVRKFVLM_					0	0	0		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.57379150390625	3	404.574233	1210.70087	-0.32829	-0.00013282	-0.81698	-0.00033053	-1.1453	-0.00046335	404.57404275466064	41.681	1.7442	41.681	41.172	42.916	0					97	61	2	0	0	0	0.29105	3	7769	7769;7828;7838		4.897	3.8255	1	50010			18449	2488	12201	12321	25006;25007;25008	25006					0.10394623412867077
RYVRKFVLM	9	Unmodified	_RYVRKFVLM_					0	0	0		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.908203125	3	404.574233	1210.70087	-0.50854	-0.00020574	-0.11997	-4.8536E-05	-0.62851	-0.00025428	404.574185256314	41.029	1.2168	41.118	40.902	42.118	0.089645					103	47	3	0	0	0	0.25979	4	7500	7452;7500;7548;7600		11.495	7.9077	1	177590			18450	2488	12201	12321	25009;25010;25011;25012	25010					0.10394623412867077
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.5717468261719	3	424.571768	1270.69348	0.25295	0.0001074	-0.041695	-1.7702E-05	0.21126	8.9694E-05	424.5716945214482	45.987	2.4588	45.987	45.586	48.045	0					275	98	6	0	0	0	0.11816	4	9149	9063;9105;9149;9278		28.495	7.1213	1	1452600			18451	2623	12202	12322	25013;25014;25015;25016	25015					0.06895607136789295
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.5719909667969	3	424.571768	1270.69348	-0.091767	-3.8962E-05	0.22699	9.6374E-05	0.13523	5.7413E-05	424.57194575815	45.626	1.2349	45.712	45.395	46.63	0.085617					190	54	5	0	0	0	0.032232	4	8856	8856;8899;8940;8989		49.527	27.99	1	3527300			18452	2623	12202	12322	25017;25018;25019;25020	25017					0.06895607136789295
RYVYYYSYL	9	Unmodified	_RYVYYYSYL_					0	0	0		PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant;ENSG00000171862|ENST00000371953|PTEN;nc|ENSG00000171862|P60484-2|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF	PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant	PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3157958984375	2	645.313689	1288.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.906	1	61.906	61.406	62.406	0								0	0	0	0.16041	1	13940	13940		24.021	7.8715	1				18453	4466	12203	12323	25021	25021					-0.019937186967808884
RYYDRWKQ	8	Unmodified	_RYYDRWKQ_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.8985290527344	3	405.540357	1213.59924	0.35107	0.00014237	3.3936	0.0013762	3.7446	0.0015186	405.5418391764347	35.902	0.2323	35.902	35.736	35.969	0					10	9	2	0	0	0	0.3576	1	6038	6038		1.6526	0.45928	1	14196	+		18454	8116	12204	12324	25022	25022					0.0009846831464983552
RYYKNIGLGF	10	Unmodified	_RYYKNIGLGF_					0	0	0		ENST00000600027.5_1_19:49999677-50000944:+|nuORF;ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.8349609375	2	615.835123	1229.65569	-0.28922	-0.00017811	0.86371	0.0005319	0.57449	0.00035379	616.3370758239348	49.234	0.2679	49.311	49.216	49.484	0.076603					16	9	2	0	0	0	0.44496	1	9966	9966		5.7319	4.0792	1	62681			18455	7295	12205	12325	25023	25023					0.05005096151307953
RYYLKFNFL	9	Unmodified	_RYYLKFNFL_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.2359313964844	3	421.901003	1262.68118	0.81043	0.00034192	-0.53929	-0.00022752	0.27115	0.0001144	421.90061410857015	65.306	0.56224	65.306	65.112	65.675	0					54	20	4	0	0	0	0.18364	2	14957	14957;15008		14.405	8.5372	1	406860			18456	4751	12206	12326	25024;25025	25024					0.0603457067375075
RYYLKFNFL	9	Unmodified	_RYYLKFNFL_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.3472900390625	2	632.347866	1262.68118	0.49741	0.00031453	-0.57663	-0.00036463	-0.079222	-5.0096E-05	632.3474981777342	65.272	0.47881	65.272	65.137	65.616	0					32	17	3	0	0	0	0.15282	2	14983	14983;15040		24.021	17.829	1	254740			18457	4751	12206	12326	25026;25027	25026					0.0603457067375075
RYYLKFNFL	9	Unmodified	_RYYLKFNFL_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.347412109375	2	632.347866	1262.68118	0.4506	0.00028494	-0.59543	-0.00037652	-0.14483	-9.1585E-05	632.3471502843767	65.285	0.66169	65.354	65.188	65.849	0.068916					44	25	3	0	0	0	0.23216	4	14848	14801;14848;14873;14939		14.838	6.6827	1	324640			18458	4751	12206	12326	25028;25029;25030;25031	25029					0.0603457067375075
RYYLKFNFL	9	Unmodified	_RYYLKFNFL_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.90087890625	3	421.901003	1262.68118	0.29999	0.00012657	-0.080577	-3.3995E-05	0.21942	9.2572E-05	421.9008122597238	65.285	0.67929	65.354	65.111	65.79	0.068916					56	26	3	0	0	0	0.22344	3	14818	14818;14865;14922		10.8	4.0219	1	354440			18459	4751	12206	12326	25032;25033;25034	25032					0.0603457067375075
RYYSEKWSF	9	Unmodified	_RYYSEKWSF_					0	0	0			REV__TP63|p.I165Nfs*33|1|0.45|ENSG00000073282|chr3:189808439-189808440|-/A|frameshift_variant	REV__TP63|p.I165Nfs*33|1|0.45|ENSG00000073282|chr3:189808439-189808440|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.5635070800781	3	422.536501	1264.58767	0.51847	0.00021907	-0.79118	-0.0003343	-0.27271	-0.00011523	422.5361453003382	62.179	0.26682	62.179	62.018	62.285	0					12	9	2	0	0	0	0.2574	1	14033	14033		3.8763	0.55669	1	77173	+		18460	8174	12207	12327	25035	25035					-0.03403773499348972
SAAADSAVRL	10	Unmodified	_SAAADSAVRL_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7593688964844	2	480.759081	959.503609	-0.045402	-2.1827E-05	0.14217	6.835E-05	0.096769	4.6522E-05	480.75903439280313	36.774	0.35257	36.774	36.589	36.942	0					18	12	2	0	0	0	0.42184	1	6320	6320		9.544	3.3382	1	37325			18461	2686	12208	12328	25036	25036					0.022236954037680334
SAAADSAVRL	10	Unmodified	_SAAADSAVRL_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.75933837890625	2	480.759081	959.503609	-0.031969	-1.5369E-05	0.41286	0.00019849	0.38089	0.00018312	480.75916102664706	36.664	0.28872	36.746	36.608	36.896	0.081715					20	11	3	0	0	0	0.42184	1	6165	6165		9.544	2.4423	1	26349			18462	2686	12208	12328	25037	25037					0.022236954037680334
SAAAVDAGMAM	11	2 Oxidation (M)	_SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_		SAAAVDAGM(1)AM(1)		SAAAVDAGM(83)AM(83)	0	0	2		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.71533203125	2	513.715167	1025.41578	-0.10031	-5.1531E-05	0.035512	1.8243E-05	-0.064798	-3.3288E-05	513.7152954349964	29.105	0.80518	29.105	28.783	29.588	0					125	46	4	0	0	0	0.0031856	2	4045	4011;4045		82.529	47.597	1	228470			18463	428	12209	12329	25038;25039	25039		20;21			-0.09591009573523479
SAAAVDAGMAM	11	2 Oxidation (M)	_SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_		SAAAVDAGM(1)AM(1)		SAAAVDAGM(69)AM(69)	0	0	2		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7152709960938	2	513.715167	1025.41578	-0.083394	-4.2841E-05	-0.073984	-3.8007E-05	-0.15738	-8.0847E-05	513.7152965242833	28.981	0.75115	29.059	28.7	29.451	0.078287					131	49	4	0	0	0	0.016193	2	3890	3852;3890		69.105	37.837	1	185360			18464	428	12209	12329	25040;25041	25041		20;21			-0.09591009573523479
SAACQLNQA	9	Unmodified	_SAACQLNQA_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2093200683594	2	453.210909	904.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.371	1	85.371	84.871	85.871	0								0	0	0	0.28631	1	21096	21096		1.8442	0.19162	1		+		18465	9782	12210	12330	25042	25042					-0.04876195427846142
SAAGKDWAF	9	Unmodified	_SAAGKDWAF_					0	0	0		nc|ENSG00000160256|Q9NSI2-2|SLX9;ENSG00000160256|ENST00000291634|SLX9	nc|ENSG00000160256|Q9NSI2-2|SLX9	nc|ENSG00000160256|Q9NSI2-2|SLX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7296447753906	2	476.729792	951.445031	0.087897	4.1903E-05	-1.6816	-0.00080167	-1.5937	-0.00075977	476.7291177920974	47.074	1.6032	47.074	46.647	48.251	0					131	59	5	0	0	0	0.024248	2	9412	9412;9456		55.235	23.966	1	545200			18466	3753	12211	12331	25043;25044	25043					-0.03263361170718326
SAAGKDWAF	9	Unmodified	_SAAGKDWAF_					0	0	0		nc|ENSG00000160256|Q9NSI2-2|SLX9;ENSG00000160256|ENST00000291634|SLX9	nc|ENSG00000160256|Q9NSI2-2|SLX9	nc|ENSG00000160256|Q9NSI2-2|SLX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.729736328125	2	476.729792	951.445031	0.04791	2.284E-05	-1.0841	-0.00051683	-1.0362	-0.00049399	476.7293510899001	46.976	1.5923	47.059	46.711	48.304	0.083096					121	62	5	0	0	0	0.071704	2	9285	9238;9285		38.615	18.161	1	594780			18467	3753	12211	12331	25045;25046	25046					-0.03263361170718326
SAALDVEL	8	Unmodified	_SAALDVEL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.21875	2	409.218726	816.422899	0.76535	0.00031319	-0.50982	-0.00020863	0.25553	0.00010457	409.21843356440195	64.775	0.94138	64.775	64.457	65.398	0					48	33	2	0	0	0	0.01629	1	14818	14818		81.613	21.224	1	191970			18468	3904	12212	12332	25047	25047					0.007344143608520426
SAALDVEL	8	Unmodified	_SAALDVEL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.2185974121094	2	409.218726	816.422899	0.25571	0.00010464	0.061154	2.5025E-05	0.31686	0.00012966	409.21873605676734	64.756	1.018	64.825	64.506	65.524	0.068916					49	38	3	0	0	0	0.016822	1	14625	14625		85.357	24.967	1	225050			18469	3904	12212	12332	25048	25048					0.007344143608520426
SAALPQSQR	9	Unmodified	_SAALPQSQR_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2587585449219	2	479.259248	956.503943	-0.51406	-0.00024637	-0.060686	-2.9084E-05	-0.57475	-0.00027545	479.25914221106905	22.939	0.77434	22.939	22.715	23.49	0					138	73	3	0	0	0	0.26104	1	2303	2303		11.495	0.6952	1	115830			18470	3462	12213	12333	25049	25049					0.023951151236246915
SAALPQSQR	9	Unmodified	_SAALPQSQR_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2589416503906	2	479.259248	956.503943	-0.2432	-0.00011655	-0.1676	-8.0326E-05	-0.4108	-0.00019688	479.2590801565133	22.749	0.56137	22.851	22.61	23.171	0.10178					119	53	3	0	0	0	0.26104	1	2109	2109		11.495	0.6952	1	116500			18471	3462	12213	12333	25050	25050					0.023951151236246915
SAALPQSQR	9	Unmodified	_SAALPQSQR_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	479.259248	956.503943	-0.2432	-0.00011655	-0.1676	-8.0326E-05	-0.4108	-0.00019688	479.2590801565133	22.749	0.56137	22.851	22.61	23.171	0.10178	-0.044309	-4.9927E-05	NaN	11.495	119	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116500			18472	3462	12213	12333							0.023951151236246915
SAAPAEQYL	9	Unmodified	_SAAPAEQYL_					0	0	0		nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11;FBXO11|p.C390Mfs*3|1|0.35|ENSG00000138081|chr2:47832664-47832665|-/T|frameshift_variant;nc|ENSG00000138081|Q86XK2-3|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.235107421875	2	475.234907	948.455261	-0.094625	-4.4969E-05	0.17561	8.3454E-05	0.080981	3.8485E-05	475.2349379739077	51.58	0.38672	51.58	51.327	51.713	0					22	12	2	0	0	0	0.11816	2	10770	10770;10828		28.495	13.656	1	162000			18473	7509	12214	12334	25051;25052	25051					-0.021027982361488284
SAAPAEQYL	9	Unmodified	_SAAPAEQYL_					0	0	0		nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11;FBXO11|p.C390Mfs*3|1|0.35|ENSG00000138081|chr2:47832664-47832665|-/T|frameshift_variant;nc|ENSG00000138081|Q86XK2-3|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2344970703125	2	475.234907	948.455261	-0.011833	-5.6236E-06	0.02786	1.324E-05	0.016027	7.6165E-06	475.23489129894716	51.499	0.40223	51.569	51.336	51.738	0.069874					26	15	2	0	0	0	0.11816	1	10624	10624		28.495	13.656	1	115800			18474	7509	12214	12334	25053	25053					-0.021027982361488284
SAAPPDGLL	9	Unmodified	_SAAPPDGLL_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.7266845703125	2	420.726718	839.438883	0.53362	0.00022451	-0.2827	-0.00011894	0.25093	0.00010557	420.7265373830149	57.938	0.67572	57.938	57.541	58.217	0					38	23	2	0	0	0	0.083124	1	12703	12703		36.127	10.728	1	89729			18475	2472	12215	12335	25054	25054					0.01274120597770434
SAAPPDGLL	9	Unmodified	_SAAPPDGLL_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.7269592285156	2	420.726718	839.438883	0.13489	5.6753E-05	-0.14135	-5.947E-05	-0.0064579	-2.717E-06	420.7266667773658	57.792	0.611	57.861	57.523	58.134	0.068375					37	22	2	0	0	0	0.10833	1	12562	12562		30.637	5.2372	1	126550			18476	2472	12215	12335	25055	25055					0.01274120597770434
SAARDDAVF	9	Unmodified	_SAARDDAVF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.230224609375	2	476.230156	950.445759	-0.17502	-8.3351E-05	0.34273	0.00016322	0.16771	7.9867E-05	476.230266822592	35.046	1.4916	35.046	34.796	36.287	0					129	54	4	0	0	0	0.13341	4	5810	5766;5810;5851;5893		26.268	9.3831	1	795060			18477	1753	12216	12336	25056;25057;25058;25059	25057					-0.03144566521677916
SAARDDAVF	9	Unmodified	_SAARDDAVF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2301940917969	2	476.230156	950.445759	-0.16444	-7.831E-05	0.30265	0.00014413	0.13821	6.582E-05	476.23024507034023	34.961	1.2765	35.04	34.802	36.078	0.078827					111	49	4	0	0	0	0.13341	2	5671	5627;5671		26.268	7.0112	1	723400			18478	1753	12216	12336	25060;25061	25061					-0.03144566521677916
SAARDDAVF	9	Unmodified	_SAARDDAVF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	476.230156	950.445759	-0.17502	-8.3351E-05	0.34273	0.00016322	0.16771	7.9867E-05	476.230266822592	35.046	1.4916	35.046	34.796	36.287	0	0.0030922	1.9353E-05	NaN	26.268	129	54	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	795060			18479	1753	12216	12336							-0.03144566521677916
SAARDDAVF	9	Unmodified	_SAARDDAVF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	476.230156	950.445759	-0.16444	-7.831E-05	0.30265	0.00014413	0.13821	6.582E-05	476.23024507034023	34.961	1.2765	35.04	34.802	36.078	0.078827	-0.0030922	-1.8823E-05	NaN	26.268	111	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	723400			18480	1753	12216	12336							-0.03144566521677916
SAASEQHVF	9	Unmodified	_SAASEQHVF_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2301025390625	2	488.230156	974.445759	-0.24169	-0.000118	0.24628	0.00012024	0.0045923	2.2421E-06	488.23022092422184	31.873	0.80286	31.873	31.412	32.215	0					81	33	3	0	0	0	0.056368	2	4870	4829;4870		41.956	17.935	1	134200			18481	3030	12217	12337	25062;25063	25063					-0.04248566521664543
SAASEQHVF	9	Unmodified	_SAASEQHVF_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.22991943359375	2	488.230156	974.445759	-0.20151	-9.8381E-05	0.21583	0.00010537	0.01432	6.9916E-06	488.2301814818288	31.809	0.83149	31.883	31.456	32.288	0.07378					81	38	3	0	0	0	0.14444	2	4731	4684;4731		24.991	11.948	1	143240			18482	3030	12217	12337	25064;25065	25065					-0.04248566521664543
SAATIVALH	9	Unmodified	_SAATIVALH_					0	0	0			REV__ENST00000465323.1_1_11:3143079-3150378:-|nuORF	REV__ENST00000465323.1_1_11:3143079-3150378:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.7677001953125	2	441.75581	881.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.359	1	92.359	91.859	92.859	0								0	0	0	0.27427	1	23221	23221		4.3292	0	1		+		18483	11986	12218	12338	25066	25066					0.05157802243024889
SAAVLSLAI	9	Unmodified	_SAAVLSLAI_					0	0	0			REV__ENST00000505222.5_1_6:82901346-82950269:-|nuORF	REV__ENST00000505222.5_1_6:82901346-82950269:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.760498046875	2	422.760561	843.506569	0.6586	0.00027843	-0.49801	-0.00021054	0.16059	6.7892E-05	422.76024178921637	79.425	0.57739	79.425	79.188	79.765	0					38	19	3	0	0	0	0.29576	1	19304	19304		7.2892	0	1	399750	+		18484	7938	12219	12339	25067	25067					0.07855570528545286
SACFQEQQEM	10	Unmodified	_SACFQEQQEM_					0	0	0		ENST00000430602.5_1_7:75144035-75157107:-|nuORF;ENST00000394921.8_1_7:75144035-75156997:-|nuORF;ENST00000418756.5_1_7:75141716-75156997:-|nuORF	ENST00000430602.5_1_7:75144035-75157107:-|nuORF	ENST00000430602.5_1_7:75144035-75157107:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.3503112792969	3	400.826846	1199.45871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.451	1	21.553	21.053	22.053	0.10178								0	0	0	0.33988	1	1760	1760		0.12286	0.049601	1				18485	6330	12220	12340	25068	25068					-0.13304239516105554
SACPEYNRL	9	Unmodified	_SACPEYNRL_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7449951171875	2	526.745116	1051.47568	0.2344	0.00012347	-0.060357	-3.1793E-05	0.17404	9.1676E-05	526.7451040920104	38.622	0.9559	38.622	38.362	39.318	0					58	35	3	0	0	0	0.19307	1	6868	6868		19.362	13.156	1	112560			18486	3226	12221	12341	25069	25069					-0.04799950847973378
SACPEYNRL	9	Unmodified	_SACPEYNRL_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7454223632812	2	526.745116	1051.47568	0.24085	0.00012687	-0.17446	-9.1894E-05	0.066391	3.4971E-05	526.7450934629458	38.557	0.92959	38.643	38.41	39.339	0.08688					61	35	2	0	0	0	0.30757	1	6707	6707		5.7319	1.4026	1	111110			18487	3226	12221	12341	25070	25070					-0.04799950847973378
SADKPDSVL	9	Unmodified	_SADKPDSVL_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-4|MCM9	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.23968505859375	2	466.24019	930.465826	-0.052367	-2.4416E-05	-0.54881	-0.00025588	-0.60118	-0.00028029	466.2398000426538	33.687	0.63165	33.687	33.491	34.123	0					57	22	4	0	0	0	0.098463	1	5390	5390		32.786	12.332	1	151030			18488	1734	12222	12342	25071	25071					-0.0021881558170662174
SADKPDSVL	9	Unmodified	_SADKPDSVL_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-4|MCM9	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.23956298828125	2	466.24019	930.465826	-0.19238	-8.9696E-05	-0.62942	-0.00029346	-0.8218	-0.00038316	466.23985143028705	33.629	0.60681	33.703	33.479	34.086	0.074322					51	25	3	0	0	0	0.26104	1	5258	5258		11.495	2.1116	1	143320			18489	1734	12222	12342	25072	25072					-0.0021881558170662174
SADMSHVAL	9	Oxidation (M)	_SADM(Oxidation (M))SHVAL_		SADM(1)SHVAL		SADM(130)SHVAL	0	0	1		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7185363769531	2	473.718567	945.422581	-0.36997	-0.00017526	0.33823	0.00016023	-0.031743	-1.5037E-05	473.71866037359604	31.932	0.95325	31.932	31.676	32.63	0					98	40	4	0	0	0	0.00070411	2	4877	4837;4877		128.37	92.321	1	578180			18490	2175	12223	12343	25073;25074	25074		136			-0.052313286306457485
SADMSHVAL	9	Oxidation (M)	_SADM(Oxidation (M))SHVAL_		SADM(1)SHVAL		SADM(59)SHVAL	0	0	1		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.71844482421875	2	473.718567	945.422581	-0.23046	-0.00010917	0.21769	0.00010312	-0.012772	-6.0503E-06	473.71859651051915	34.298	2.8767	34.298	33.2	36.077	0					208	108	3	0	0	0	0.01943	3	5573	5530;5573;5618		58.679	41.737	1	242070			18491	2175	12223	12343	25075;25076;25077	25076		136			-0.052313286306457485
SADMSHVAL	9	Oxidation (M)	_SADM(Oxidation (M))SHVAL_		SADM(1)SHVAL		SADM(89)SHVAL	0	0	1		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7185363769531	2	473.718567	945.422581	-0.35031	-0.00016595	0.34923	0.00016544	-0.0010788	-5.1103E-07	473.71865744721407	31.877	1.2947	31.95	31.697	32.992	0.073782					121	63	4	0	0	0	0.0045547	2	4753	4709;4753		88.904	55.413	1	474160			18492	2175	12223	12343	25078;25079	25079		136			-0.052313286306457485
SADMSHVAL	9	Oxidation (M)	_SADM(Oxidation (M))SHVAL_		SADM(1)SHVAL		SADM(68)SHVAL	0	0	1		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7184753417969	2	473.718567	945.422581	-0.22312	-0.0001057	0.27217	0.00012893	0.049047	2.3235E-05	473.7186075079572	34.133	2.6565	34.21	32.994	35.651	0.076244					213	110	3	0	0	0	0.0097093	2	5425	5376;5425		68.081	45.344	1	217650			18493	2175	12223	12343	25080;25081	25081		136			-0.052313286306457485
SADMSHVAL	9	Unmodified	_SADMSHVAL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7207336425781	2	465.72111	929.427666	-0.32924	-0.00015334	-0.14421	-6.7161E-05	-0.47345	-0.0002205	465.72096877984313	42.731	0.48181	42.731	42.517	42.999	0					41	16	3	0	0	0	0.0569	2	8108	8108;8165		41.84	27.934	1	213320			18494	2175	12223	12344	25082;25083	25082					-0.039870247680369175
SADMSHVAL	9	Unmodified	_SADMSHVAL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7208557128906	2	465.72111	929.427666	-0.38327	-0.0001785	0.083701	3.8981E-05	-0.29957	-0.00013952	465.72106293716195	42.647	0.64223	42.736	42.52	43.162	0.089764					46	24	3	0	0	0	0.0569	1	7962	7962		41.84	22.583	1	209730			18495	2175	12223	12344	25084	25084					-0.039870247680369175
SADPNVVDL	9	Unmodified	_SADPNVVDL_					0	0	0		ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2322082519531	2	465.232364	928.450176	0.25754	0.00011982	-0.43058	-0.00020032	-0.17303	-8.0501E-05	465.23206501774615	56.946	0.59244	56.946	56.674	57.267	0					50	21	3	0	0	0	0.064247	1	12455	12455		40.239	8.9709	1	595870			18496	4853	12224	12345	25085	25085					-0.016911020987663505
SADPNVVDL	9	Unmodified	_SADPNVVDL_					0	0	0		ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.2320556640625	2	465.232364	928.450176	0.15983	7.4359E-05	-0.16902	-7.8634E-05	-0.0091889	-4.275E-06	465.2321497386443	56.889	0.60517	56.956	56.626	57.231	0.066452					49	21	3	0	0	0	0.064247	1	12300	12300		40.239	8.9709	1	418860			18497	4853	12224	12345	25086	25086					-0.016911020987663505
SADPSGAFRM	10	Oxidation (M)	_SADPSGAFRM(Oxidation (M))_		SADPSGAFRM(1)		SADPSGAFRM(46)	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.734619140625	2	527.734748	1053.45494	-0.061701	-3.2562E-05	0.17261	9.1093E-05	0.11091	5.8531E-05	527.7347328497946	33.137	0.64071	33.211	32.992	33.633	0.074322					62	25	4	0	0	0	0.093146	1	5095	5095		46.022	29.873	1	174930			18498	5252	12225	12346	25087	25087		296			-0.06964541227648624
SADPYEREDL	10	Unmodified	_SADPYEREDL_					0	0	0		nc|ENSG00000183876|Q5FYB1-2|ARSI;ENSG00000183876|ENST00000328668|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7673950195312	2	597.7673	1193.52005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.893	1	38.893	38.393	39.393	0								0	0	0	0.33411	1	6959	6959		7.1017	1.8048	1				18499	4950	12226	12347	25088	25088					-0.06897268220791375
SADRSEESF	9	Unmodified	_SADRSEESF_					0	0	0		nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2201538085938	2	514.219985	1026.42542	-0.14107	-7.2539E-05	0.22403	0.0001152	0.082968	4.2664E-05	514.220006106681	26.022	0.39133	26.022	25.871	26.262	0					52	30	2	0	0	0	0.26104	1	3125	3125		11.495	2.9014	1	27436			18500	4224	12227	12348	25089	25089					-0.08673781972129291
SADRSEESF	9	Unmodified	_SADRSEESF_					0	0	0		nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	514.219985	1026.42542	-0.038295	-1.9692E-05	0.41004	0.00021085	0.37175	0.00019116	514.2201667678542	25.876	0.3722	25.968	25.824	26.196	0.091507	-0.027273	8.8476E-05	NaN	11.495	53	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28349			18501	4224	12227	12348							-0.08673781972129291
SADSAEAHSL	10	Unmodified	_SADSAEAHSL_					0	0	0		ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000480468.1_1_11:116728475-116732017:-|nuORF	ENST00000480468.1_1_11:116728475-116732017:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.22174072265625	2	494.222528	986.430503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.397	1	25.493	24.993	25.993	0.096073								0	0	0	0.33738	1	2833	2833		3.2813	0.39209	1				18502	3764	12228	12349	25090	25090					-0.06325478109533833
SADSLEHVL	9	Unmodified	_SADSLEHVL_					0	0	0		nc|ENSG00000110344|Q14139-2|UBE4A;ENSG00000110344|ENST00000252108|UBE4A	nc|ENSG00000110344|Q14139-2|UBE4A	nc|ENSG00000110344|Q14139-2|UBE4A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.74554443359375	2	485.745639	969.476725	-0.082269	-3.9962E-05	-0.22275	-0.0001082	-0.30502	-0.00014816	485.7454935022485	49.408	0.43862	49.484	49.282	49.721	0.076607					23	15	2	0	0	0	0.14331	1	10004	10004		36.127	10.728	1	91186			18503	1663	12229	12350	25091	25091					-0.00923413207442536
SADVNECEI	9	Unmodified	_SADVNECEI_					0	0	0		CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.N1018Hfs*6|1|0.03|ENSG00000107611|chr10:17065595-17065596|-/TAGAATAAAGGGTAGTG|frameshift_variant;CUBN|p.K663Sfs*38|1|0.32|ENSG00000107611|chr10:17085721-17085721|C/-|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.20550537109375	2	490.205489	978.396426	0.10404	5.1001E-05	-0.027832	-1.3644E-05	0.076208	3.7358E-05	490.2054106761711	35.677	0.34782	35.756	35.596	35.943	0.078827					31	12	3	0	0	0	0.27929	1	5905	5905		9.3831	0	1	80954			18504	257	12230	12351	25092	25092					-0.09363642592791166
SAEELDAQL	9	Unmodified	_SAEELDAQL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2349548339844	2	488.235104	974.455655	0.38133	0.00018618	-0.35301	-0.00017235	0.028316	1.3825E-05	488.23478155943684	53.966	0.53941	53.966	53.783	54.322	0					27	18	2	0	0	0	0.056368	1	11552	11552		41.956	9.1699	1	218310			18505	4933	12231	12352	25093	25093					-0.03259423306951703
SAEELDAQL	9	Unmodified	_SAEELDAQL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	488.235104	974.455655	0.35031	0.00017104	-0.2531	-0.00012357	0.097215	4.7464E-05	488.23489631098914	53.924	0.34212	53.989	53.815	54.157	0.065128	0.011588	4.2219E-05	NaN	41.956	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147020			18506	4933	12231	12352							-0.03259423306951703
SAENLEEFENC	11	Unmodified	_SAENLEEFENC_					0	0	0		CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46;nc|ENSG00000171811|Q8IYW2-3|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46	CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.7551879882812	2	642.756075	1283.4976	0.23644	0.00015197	-1.4429	-0.00092743	-1.2065	-0.00077546	642.7553663587402	77.569	0.55444	77.569	77.429	77.984	0					39	19	3	0	0	0	0.40891	1	18783	18783		2.2828	0.63015	1	455200			18507	126	12232	12353	25094	25094					-0.1328123568071078
SAEPLHEAI	9	Unmodified	_SAEPLHEAI_					0	0	0			REV__ENST00000393522.8_1_5:175516482-175536190:+|nuORF	REV__ENST00000393522.8_1_5:175516482-175536190:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.74810791015625	2	483.748182	965.481811	-0.021606	-1.0452E-05	-0.025488	-1.233E-05	-0.047094	-2.2782E-05	483.74813268732794	38.652	0.48948	38.652	38.514	39.004	0					45	18	3	0	0	0	0.21398	1	6887	6887		16.942	0	1	85400	+		18508	10199	12233	12354	25095	25095					-0.002311093448156498
SAEPSPTVM	9	Oxidation (M)	_SAEPSPTVM(Oxidation (M))_		SAEPSPTVM(1)		SAEPSPTVM(150)	0	0	1		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.7129211425781	2	467.71295	933.411348	-0.1686	-7.8854E-05	0.29877	0.00013974	0.13017	6.0883E-05	467.71298157469505	32.831	0.88668	32.831	32.548	33.434	0					81	38	3	0	0	0	8.832E-06	2	5142	5095;5142		149.99	68.382	1	492450			18509	7464	12234	12355	25096;25097	25097		332			-0.05802150724764488
SAEPSPTVM	9	Oxidation (M)	_SAEPSPTVM(Oxidation (M))_		SAEPSPTVM(1)		SAEPSPTVM(89)	0	0	1		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.7128601074219	2	467.71295	933.411348	0.025417	1.1888E-05	-0.16159	-7.5579E-05	-0.13618	-6.3692E-05	467.71277607316733	35.1	1.7592	35.1	34.395	36.155	0					140	65	3	0	0	0	0.0045547	4	5860	5768;5817;5860;5911		88.904	42.883	1	200830			18510	7464	12234	12355	25098;25099;25100;25101	25100		332			-0.05802150724764488
SAEPSPTVM	9	Oxidation (M)	_SAEPSPTVM(Oxidation (M))_		SAEPSPTVM(1)		SAEPSPTVM(150)	0	0	1		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.7128601074219	2	467.71295	933.411348	-0.27401	-0.00012816	0.22826	0.00010676	-0.045753	-2.1399E-05	467.71296368660984	32.766	1.0468	32.839	32.586	33.633	0.073784					96	45	4	0	0	0	8.832E-06	2	5000	4958;5000		149.99	68.382	1	427620			18511	7464	12234	12355	25102;25103	25103		332			-0.05802150724764488
SAEPSPTVM	9	Oxidation (M)	_SAEPSPTVM(Oxidation (M))_		SAEPSPTVM(1)		SAEPSPTVM(96)	0	0	1		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.71282958984375	2	467.71295	933.411348	-0.10262	-4.7996E-05	0.10412	4.8698E-05	0.0015011	7.0208E-07	467.7128746708862	35.017	2.1571	35.096	34.021	36.178	0.078831					153	87	3	0	0	0	0.0043613	2	5691	5647;5691		96.285	50.264	1	174990			18512	7464	12234	12355	25104;25105	25105		332			-0.05802150724764488
SAEPSPTVM	9	Unmodified	_SAEPSPTVM_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7154541015625	2	459.715493	917.416433	-0.038032	-1.7484E-05	-0.27029	-0.00012426	-0.30832	-0.00014174	459.7152723884077	44.152	0.41386	44.152	43.945	44.359	0					25	13	2	0	0	0	0.26684	1	8568	8568		10.824	3.5347	1	42215			18513	7464	12234	12356	25106	25106					-0.04557846862155657
SAEPSPTVM	9	Unmodified	_SAEPSPTVM_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7154541015625	2	459.715493	917.416433	-0.12596	-5.7904E-05	0.14005	6.4383E-05	0.014093	6.4789E-06	459.71555978778696	44.041	0.40771	44.13	43.927	44.335	0.088921					21	13	2	0	0	0	0.18364	1	8403	8403		20.454	9.6297	1	60973			18514	7464	12234	12356	25107	25107					-0.04557846862155657
SAEQAKVVL	9	Unmodified	_SAEQAKVVL_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.7742004394531	2	472.7742	943.533846	-0.016681	-7.8862E-06	0.051413	2.4307E-05	0.034732	1.6421E-05	472.77404822873416	36.754	0.84282	36.754	36.522	37.364	0					70	32	4	0	0	0	0.047066	2	6294	6294;6344		43.982	22.445	1	310820			18515	1721	12235	12357	25108;25109	25108					0.059820540689429436
SAEQAKVVL	9	Unmodified	_SAEQAKVVL_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.7743225097656	2	472.7742	943.533846	-0.046762	-2.2108E-05	0.0083989	3.9708E-06	-0.038363	-1.8137E-05	472.7740597715182	36.669	0.64276	36.75	36.516	37.159	0.081711					57	25	3	0	0	0	0.11816	2	6147	6147;6190		28.495	14.588	1	266420			18516	1721	12235	12357	25110;25111	25110					0.059820540689429436
SAESIPQSYN	10	Unmodified	_SAESIPQSYN_					0	0	0			REV__ENSG00000139178|ENST00000266542|C1RL	REV__ENSG00000139178|ENST00000266542|C1RL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.250244140625	2	548.251286	1094.48802	0.57882	0.00031734	-2.1026	-0.0011528	-1.5238	-0.00083541	548.2500339553761	92.301	0.73872	92.301	91.869	92.608	0					65	27	3	0	0	0	0.45133	1	23164	23164		4.5289	1.2476	1	188260	+		18517	9336	12236	12358	25112	25112					-0.05544635903947892
SAEVTPPVL	9	Unmodified	_SAEVTPPVL_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7561950683594	2	456.755475	911.496398	0.52086	0.00023791	-0.025598	-1.1692E-05	0.49526	0.00022621	456.7554150969368	60.911	0.44086	60.911	60.669	61.11	0					23	15	2	0	0	0	0.22344	1	13622	13622		15.847	4.2069	1	86466			18518	3609	12237	12359	25113	25113					0.037109628033249464
SAEVTPPVL	9	Unmodified	_SAEVTPPVL_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7552490234375	2	456.755475	911.496398	0.14694	6.7115E-05	-0.059976	-2.7394E-05	0.086962	3.972E-05	456.75551187547387	60.851	0.45369	60.924	60.689	61.143	0.073421					27	15	2	0	0	0	0.18364	1	13486	13486		20.454	8.8133	1	100060			18519	3609	12237	12359	25114	25114					0.037109628033249464
SAFECREQ	8	Unmodified	_SAFECREQ_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000571644.1_1_16:31374636-31388147:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2085876464844	2	485.208366	968.40218	0.015772	7.6525E-06	0.67989	0.00032989	0.69566	0.00033754	485.20861997696045	58.041	0.56192	58.109	57.851	58.413	0.068375					53	21	3	0	0	0	0.50815	1	12584	12584		11.64	0	1	446900			18520	3026	12238	12360	25115	25115					-0.08328499290450964
SAFIPDPPLF	10	Unmodified	_SAFIPDPPLF_					0	0	0			REV__nc|ENSG00000070413|P98153-3|DGCR2	REV__nc|ENSG00000070413|P98153-3|DGCR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2935791015625	2	552.292225	1102.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.38	1	100.38	99.876	100.88	0								0	0	0	0.33681	1	25661	25661		3.9444	1.3669	1		+		18521	8148	12239	12361	25116	25116					0.022715112457944997
SAFKPGAH	8	Unmodified	_SAFKPGAH_					0	0	0			REV__nc|ENSG00000059573|P54886-2|ALDH18A1	REV__nc|ENSG00000059573|P54886-2|ALDH18A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.7139587402344	2	407.713945	813.413337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.13	1	32.13	31.63	32.63	0								0	0	0	0.38822	1	4929	4929		9.3474	0	1		+		18522	8077	12240	12362	25117	25117					-0.000833091340041392
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	ENSG00000115970|ENST00000405975|THADA	ENSG00000115970|ENST00000405975|THADA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.2718505859375	2	503.271824	1004.5291	0.14346	7.22E-05	0.46891	0.00023599	0.61237	0.00030819	503.2720777197017	52.997	0.78382	52.997	52.729	53.513	0					35	20	2	0	0	0	0.14539	1	11209	11209		24.882	6.7352	1	315740			18523	1932	12241	12363	25118	25118					0.027011699261947797
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	ENSG00000115970|ENST00000405975|THADA	ENSG00000115970|ENST00000405975|THADA	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	503.271824	1004.5291	0.3244	0.00016326	0.20534	0.00010334	0.52973	0.0002666	503.2718751992871	52.941	0.70312	53.006	52.602	53.306	0.06543	0.0045738	-0.00013639	NaN	24.882	47	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238310			18524	1932	12241	12363							0.027011699261947797
SAFPLSWAF	9	Unmodified	_SAFPLSWAF_					0	0	0		ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7540893554688	2	513.258185	1024.50182	0.39359	0.00020202	-0.20345	-0.00010442	0.19014	9.7592E-05	513.2580184326612	96.315	0.52242	96.315	96.134	96.657	0					41	23	2	0	0	0	0.065541	1	24440	24440		39.957	27.426	1	332130			18525	6684	12242	12364	25119	25119					-0.009453136141928553
SAFPLSWAF	9	Unmodified	_SAFPLSWAF_					0	0	0		ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7785034179688	2	513.258185	1024.50182	0.40859	0.00020971	-0.42417	-0.00021771	-0.015577	-7.9952E-06	513.2578069095453	96.336	0.568	96.376	96.136	96.704	0.039772					48	30	2	0	0	0	0.21603	1	24347	24347		20.454	11.106	1	219640			18526	6684	12242	12364	25120	25120					-0.009453136141928553
SAFSSWEEL	9	Unmodified	_SAFSSWEEL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3470835-3470958:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2373046875	2	528.237647	1054.46074	0.45852	0.00024221	-0.42173	-0.00022278	0.036791	1.9434E-05	528.2374403019166	74.824	0.32613	74.824	74.635	74.961	0					22	11	3	0	0	0	0.065576	1	17878	17878		39.95	39.95	1	100590			18527	4922	12243	12365	25121	25121					-0.06431119444323485
SAFSSWEEL	9	Unmodified	_SAFSSWEEL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3470835-3470958:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2388916015625	2	528.237647	1054.46074	0.37596	0.00019859	0.27271	0.00014406	0.64867	0.00034265	528.2378869242992	74.798	0.29811	74.846	74.673	74.971	0.048538					20	10	3	0	0	0	0.15282	1	17731	17731		24.021	13.947	1	108270			18528	4922	12243	12365	25122	25122					-0.06431119444323485
SAFYYNRGM	9	Unmodified	_SAFYYNRGM_					0	0	0			REV__ENST00000230640.9_1_5:54639171-54639198:+|nuORF	REV__ENST00000230640.9_1_5:54639171-54639198:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7486572265625	2	554.747659	1107.48076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.204	1	97.245	96.745	97.745	0.040855								0	0	0	0.27613	1	24542	24542		3.9444	1.2092	1		+		18529	11192	12244	12366	25123	25123					-0.06867646985369902
SAGEPPNWTW	10	Unmodified	_SAGEPPNWTW_					0	0	0			REV__nc|ENSG00000131724|P78552-2|IL13RA1	REV__nc|ENSG00000131724|P78552-2|IL13RA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7561645507812	2	572.756538	1143.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.52	1	57.52	57.02	58.02	0								0	0	0	0.31183	1	12606	12606		16.149	7.9936	1		+		18530	9093	12245	12367	25124	25124					-0.06748608458860872
SAGGPVTVR	9	Unmodified	_SAGGPVTVR_					0	0	0		ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.2376403808594	2	422.237784	842.461016	-0.037748	-1.5939E-05	-0.028635	-1.2091E-05	-0.066383	-2.8029E-05	422.23768124175905	24.699	1.0674	24.699	24.508	25.575	0					183	81	4	0	0	0	0.0077293	2	2774	2774;2813		74.2	36.024	1	601450			18531	6264	12246	12368	25125;25126	25125					0.03348345066183356
SAGGPVTVR	9	Unmodified	_SAGGPVTVR_					0	0	0		ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.23773193359375	2	422.237784	842.461016	-0.19163	-8.0913E-05	0.25173	0.00010629	0.060096	2.5375E-05	422.2377853698908	24.547	0.97878	24.643	24.444	25.423	0.096073					196	86	4	0	0	0	0.0046695	2	2598	2598;2636		84.522	38.823	1	566390			18532	6264	12246	12368	25127;25128	25127					0.03348345066183356
SAHLFEVEL	9	Unmodified	_SAHLFEVEL_					0	0	0		ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.771728515625	2	522.771657	1043.52876	0.72577	0.00037941	-0.86471	-0.00045205	-0.13894	-7.2633E-05	522.771173142804	66.079	0.62671	66.079	65.879	66.506	0					29	22	2	0	0	0	0.18364	1	15252	15252		20.454	3.3407	1	228990			18533	3219	12247	12369	25129	25129					0.008737502063240754
SAHLFEVEL	9	Unmodified	_SAHLFEVEL_					0	0	0		ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7717895507812	2	522.771657	1043.52876	0.49306	0.00025776	-0.56418	-0.00029494	-0.071118	-3.7178E-05	522.7713477788233	65.988	0.58844	66.054	65.971	66.56	0.066864					33	21	3	0	0	0	0.10067	1	15048	15048		32.305	4.6767	1	218990			18534	3219	12247	12369	25130	25130					0.008737502063240754
SAHLSLSNFF	10	Unmodified	_SAHLSLSNFF_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7806396484375	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.421	1	89.421	88.921	89.921	0								0	0	0	0.33565	1	22326	22326		5.2969	0.066215	1		+		18535	9141	12248	12370	25131	25131					-0.005354450451250159
SAHLYGTYIF	10	Unmodified	_SAHLYGTYIF_					0	0	0			REV__nc|ENSG00000112365|O43167-2|ZBTB24	REV__nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8084106445312	2	586.292756	1170.57096	0.74486	0.00043671	-1.1096	-0.00065058	-0.36479	-0.00021387	586.2918853025101	64.14	0.78893	64.14	63.844	64.632	0					60	27	3	0	0	0	0.33099	1	14729	14729		19.257	5.6421	1	524350	+		18536	8713	12249	12371	25132	25132					-0.007502743853137872
SAHNKDIAL	9	Unmodified	_SAHNKDIAL_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7616271972656	2	484.761623	967.508694	-0.49115	-0.00023809	0.1014	4.9154E-05	-0.38975	-0.00018893	484.7617070003599	24.32	0.63351	24.32	24.137	24.771	0					118	52	3	0	0	0	0.22861	1	2653	2653		15.248	3.0078	1	105360			18537	714	12250	12372	25133	25133					0.023639992663675002
SAHNKDIAL	9	Unmodified	_SAHNKDIAL_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.76141357421875	2	484.761623	967.508694	-0.27476	-0.00013319	0.0834	4.0429E-05	-0.19136	-9.2765E-05	484.7616472764448	24.107	0.50973	24.207	24.047	24.557	0.099739					105	48	3	0	0	0	0.26705	1	2474	2474		10.8	2.644	1	114030			18538	714	12250	12372	25134	25134					0.023639992663675002
SAHQENTSL	9	Unmodified	_SAHQENTSL_					0	0	0		ENST00000483661.5_1_20:18005282-18039681:-|nuORF;ENSG00000125850|ENST00000278780|OVOL2;nc|ENSG00000125850|Q9BRP0-2|OVOL2	ENST00000483661.5_1_20:18005282-18039681:-|nuORF	ENST00000483661.5_1_20:18005282-18039681:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7304382324219	2	493.73052	985.446488	0.16669	8.2298E-05	-0.19302	-9.53E-05	-0.026335	-1.3002E-05	493.73033017943925	20.634	0.37395	20.734	20.601	20.975	0.099499					92	41	3	0	0	0	0.26104	1	1546	1546		11.495	0.67078	1	101520			18539	2317	12251	12373	25135	25135					-0.04681771872617446
SAHTQIQAI	9	Unmodified	_SAHTQIQAI_					0	0	0			REV__ENSG00000170484|ENST00000305620|KRT74	REV__ENSG00000170484|ENST00000305620|KRT74	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7613220214844	2	484.761623	967.508694	-0.49115	-0.00023809	0.1014	4.9154E-05	-0.38975	-0.00018893	484.7617070003599	24.32	0.63351	24.32	24.137	24.771	0					118	52	3	0	0	0	0.30757	2	2617	2617;2691		5.7319	0	1	105360	+	+	18540	7852	12252	12374	25136;25137	25136					0.023639992663675002
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.9167175292969	2	436.271627	870.528701	-0.21432	-9.3501E-05	0.43841	0.00019127	0.22409	9.7766E-05	436.2717525587686	43.092	0.35582	43.182	43.039	43.395	0.089764					23	12	2	0	0	0	0.08788	1	8101	8101		49.554	21.925	1	106820			18541	4118	12253	12375	25138	25138					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	436.271627	870.528701	-0.017587	-7.6729E-06	-0.18219	-7.9484E-05	-0.19978	-8.7156E-05	436.27143579012966	43.207	0.4813	43.207	43.063	43.544	0	0.012444	-0.00031576	NaN	49.554	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144630			18542	4118	12253	12375							0.0882579499698295
SAICRYFF	8	Unmodified	_SAICRYFF_					0	0	0		nc|ENSG00000166986|P56192-2|MARS1;ENSG00000166986|ENST00000262027|MARS1;ENST00000550449.5_1_12:57881846-57883182:+|nuORF;ENST00000551842.5_1_12:57881873-57883359:+|nuORF;ENST00000553162.5_1_12:57881873-57883795:+|nuORF	nc|ENSG00000166986|P56192-2|MARS1	nc|ENSG00000166986|P56192-2|MARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.263916015625	2	503.744388	1005.47422	0.27814	0.00014011	3.3135	0.0016691	3.5916	0.0018092	503.74625980574194	88.125	0.39384	88.155	87.935	88.329	0.030037					18	13	2	0	0	0	0.50159	1	21742	21742		12.532	3.1841	1	77505			18543	4193	12254	12376	25139	25139					-0.028295401460809444
SAIEDVQLL	9	Unmodified	_SAIEDVQLL_					0	0	0		nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2716064453125	2	494.27149	986.528426	0.23294	0.00011514	-0.27912	-0.00013796	-0.046186	-2.2828E-05	494.2714843924528	72.433	0.37347	72.489	72.321	72.694	0.055931					19	12	2	0	0	0	0.19307	1	17002	17002		19.362	5.4559	1	93799			18544	3531	12255	12377	25140	25140					0.03462330486490828
SAIFPDVAL	9	Unmodified	_SAIFPDVAL_					0	0	0		ENST00000471645.5_1_1:214454597-214504559:+|nuORF;nc|ENSG00000143499|Q9NRG4-2|SMYD2;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;ENSG00000143499|ENST00000366957|SMYD2	ENST00000471645.5_1_1:214454597-214504559:+|nuORF	ENST00000471645.5_1_1:214454597-214504559:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.758056640625	2	466.758018	931.501483	0.38417	0.00017932	-0.3727	-0.00017396	0.011475	5.3561E-06	466.7577496141871	83.041	0.553	83.041	82.848	83.401	0					40	18	3	0	0	0	0.083124	2	20391	20391;20447		36.127	15.673	1	338480			18545	6674	12256	12378	25141;25142	25141					0.032992666659424685
SAIFPDVAL	9	Unmodified	_SAIFPDVAL_					0	0	0		ENST00000471645.5_1_1:214454597-214504559:+|nuORF;nc|ENSG00000143499|Q9NRG4-2|SMYD2;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;ENSG00000143499|ENST00000366957|SMYD2	ENST00000471645.5_1_1:214454597-214504559:+|nuORF	ENST00000471645.5_1_1:214454597-214504559:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.7577819824219	2	466.758018	931.501483	0.075975	3.5462E-05	0.077998	3.6406E-05	0.15397	7.1868E-05	466.75789932409276	83.057	0.58872	83.078	82.851	83.44	0.021744					46	20	3	0	0	0	0.0569	2	20223	20223;20278		41.84	14.956	1	282020			18546	6674	12256	12378	25143;25144	25143					0.032992666659424685
SAIGLSIAL	9	Unmodified	_SAIGLSIAL_					0	0	0		CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884173-34884275:+|nuORF;GPI-EYS|2|fusion;GPI-EYS|1|fusion	CON__Q3ZBD7;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.7606506347656	2	422.760561	843.506569	0.065564	2.7718E-05	-0.053652	-2.2682E-05	0.011912	5.0359E-06	422.76045581315344	79.324	0.60412	79.351	79.195	79.799	0.026436					46	21	3	0	0	0	0.0064512	1	19110	19110		78.149	13.913	1	566830		+	18547	7344;236	12257	12379	25145	25145					0.07855570528568023
SAIHILDVL	9	Unmodified	_SAIHILDVL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.79248046875	2	490.792392	979.570232	0.008243	4.0456E-06	0.31373	0.00015398	0.32197	0.00015802	490.7925084710559	73.099	0.48914	73.099	72.853	73.342	0					39	16	3	0	0	0	0.0097093	2	17325	17325;17372		68.081	15.812	1	1110900			18548	2838	12258	12380	25146;25147	25146					0.07962930965663872
SAIHILDVL	9	Unmodified	_SAIHILDVL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7924499511719	2	490.792392	979.570232	0.10855	5.3277E-05	0.15145	7.433E-05	0.26	0.00012761	490.79244245919205	73.031	0.56142	73.083	72.836	73.398	0.052567					46	20	3	0	0	0	0.0074933	2	17203	17156;17203		74.929	28.908	1	1053000			18549	2838	12258	12380	25148;25149	25149					0.07962930965663872
SAIIFETPL	9	Unmodified	_SAIIFETPL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7791442871094	2	495.778951	989.543348	0.95322	0.00047259	-1.4243	-0.00070612	-0.47104	-0.00023353	495.7783603850031	80.829	0.41024	80.829	80.646	81.056	0					27	13	3	0	0	0	0.11547	2	19715	19715;19776		29.082	9.8246	1	112040			18550	1862	12259	12381	25150;25151	25150					0.04815822354487409
SAIIFETPL	9	Unmodified	_SAIIFETPL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.281005859375	2	495.778951	989.543348	0.72961	0.00036172	-0.6812	-0.00033773	0.048404	2.3998E-05	495.7784631679348	80.799	0.48503	80.822	80.679	81.164	0.023605					28	16	2	0	0	0	0.11547	1	19547	19547		29.082	9.8246	1	105510			18551	1862	12259	12381	25152	25152					0.04815822354487409
SAIITEEML	9	Oxidation (M)	_SAIITEEM(Oxidation (M))L_		SAIITEEM(1)L		SAIITEEM(48)L	0	0	1		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7575988769531	2	511.757358	1021.50016	0.35889	0.00018367	0.25646	0.00013125	0.61535	0.00031491	511.75735099191763	61.351	0.33243	61.351	61.086	61.418	0					19	11	2	0	0	0	0.03472	1	13767	13767		47.749	13.347	1	106730			18552	5715	12260	12382	25153	25153		321			-0.00972735485117937
SAIITEEML	9	Oxidation (M)	_SAIITEEM(Oxidation (M))L_					0	0	1		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	511.757358	1021.50016	0.26911	0.00013772	0.47159	0.00024134	0.7407	0.00037906	511.7570789160934	61.329	0.3872	61.403	61.027	61.414	0.073421	0.025793	0.00011757	NaN	47.749	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94493			18553	5715	12260	12382				321			-0.00972735485117937
SAIKEEQEL	9	Unmodified	_SAIKEEQEL_					0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7717895507812	2	523.771854	1045.52915	-0.073884	-3.8698E-05	-0.075858	-3.9732E-05	-0.14974	-7.843E-05	523.7718007053774	33.373	1.0229	33.373	33.13	34.153	0					98	37	5	0	0	0	0.0042454	3	5275	5275;5323;5365		100.71	45.206	1	1118100			18554	1812	12261	12383	25154;25155;25156	25154					0.008211251355305649
SAIKEEQEL	9	Unmodified	_SAIKEEQEL_					0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7718505859375	2	523.771854	1045.52915	-0.1028	-5.3843E-05	0.10172	5.3279E-05	-0.0010763	-5.6375E-07	523.771878523519	33.316	0.86888	33.39	33.169	34.038	0.074322					97	36	5	0	0	0	0.002813	4	5177	5132;5177;5221;5267		110.79	46.832	1	878920			18555	1812	12261	12383	25157;25158;25159;25160	25158					0.008211251355305649
SAINQVEAL	9	Unmodified	_SAINQVEAL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2478332519531	2	472.756007	943.497461	0.020907	9.8839E-06	2.6446	0.0012503	2.6655	0.0012602	472.7563999468087	56.925	0.43577	56.925	56.831	57.267	0					20	15	2	0	0	0	0.24101	1	12433	12433		15.248	1.3424	1	98434			18556	89	12262	12384	25161	25161					0.023451771722420744
SAISAFEIF	9	Unmodified	_SAISAFEIF_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2730407714844	2	492.755475	983.496398	0.56291	0.00027737	0.77248	0.00038065	1.3354	0.00065802	492.75559921645083	88.124	0.73035	88.124	87.948	88.679	0					49	28	3	0	0	0	0.024893	1	21931	21931		54.774	10.367	1	651380			18557	2061	12263	12385	25162	25162					0.0039896280333096
SAISAFEIF	9	Unmodified	_SAISAFEIF_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2730407714844	2	492.755475	983.496398	0.35611	0.00017548	0.84855	0.00041813	1.2047	0.00059361	492.75559992437985	88.117	0.60727	88.147	87.881	88.488	0.030037					51	21	3	0	0	0	0.015682	1	21748	21748		61.357	27.255	1	701250			18558	2061	12263	12385	25163	25163					0.0039896280333096
SAISEGTVL	9	Unmodified	_SAISEGTVL_					0	0	0		ENST00000569796.1_1_16:2285204-2285570:+|nuORF;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2285204-2285570:+|nuORF	ENST00000569796.1_1_16:2285204-2285570:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.5423889160156	2	438.737283	875.460012	0.61627	0.00027038	-0.55641	-0.00024412	0.059862	2.6264E-05	438.73693098060073	53.814	0.48228	53.814	53.682	54.164	0					39	16	3	0	0	0	0.0085079	1	11508	11508		81.613	14.269	1	275290			18559	4242	12264	12386	25164	25164					0.01730085906626755
SAISEGTVL	9	Unmodified	_SAISEGTVL_					0	0	0		ENST00000569796.1_1_16:2285204-2285570:+|nuORF;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2285204-2285570:+|nuORF	ENST00000569796.1_1_16:2285204-2285570:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.7374572753906	2	438.737283	875.460012	0.3397	0.00014904	-0.2595	-0.00011385	0.080198	3.5186E-05	438.7370459899314	53.799	0.4625	53.865	53.677	54.14	0.06543					42	18	3	0	0	0	0.074645	1	11299	11299		37.974	7.3375	1	278590			18560	4242	12264	12386	25165	25165					0.01730085906626755
SAKPLDLCVT	10	Unmodified	_SAKPLDLCVT_					0	0	0			REV__ENST00000528558.1_1_8:145677565-145687797:-|nuORF	REV__ENST00000528558.1_1_8:145677565-145687797:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7642822265625	2	523.781167	1045.54778	0.17948	9.4006E-05	-1.0841	-0.00056784	-0.90464	-0.00047383	523.7804980801033	94.692	0.78596	94.73	94.5	95.286	0.038086					57	32	3	0	0	0	0.43972	1	23928	23928		6.7232	0	1	188370	+		18561	10753	12265	12387	25166	25166					0.026829635057310952
SAKYRPDLL	9	Unmodified	_SAKYRPDLL_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.3184814453125	2	531.800749	1061.58694	0.49685	0.00026422	3.7454	0.0019918	4.2423	0.002256	531.8022286011505	71.351	0.59643	71.41	71.084	71.68	0.058578					37	21	3	0	0	0	0.2546	1	16695	16695		12.241	0	1	302760	+		18562	8395	12266	12388	25167	25167					0.058614318515992636
SALEKEEAL	9	Unmodified	_SALEKEEAL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2613525390625	2	495.261122	988.507691	0.31011	0.00015359	0.20574	0.0001019	0.51586	0.00025549	495.2611361656645	36.01	0.75183	36.01	35.816	36.568	0					74	29	3	0	0	0	0.0056336	2	6099	6099;6151		80.676	21.997	1	502010			18563	1577	12267	12389	25168;25169	25168					0.012977401068042127
SALEKEEAL	9	Unmodified	_SALEKEEAL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.26129150390625	2	495.261122	988.507691	0.30194	0.00014954	0.22818	0.00011301	0.53012	0.00026255	495.2611584417454	35.952	0.69616	36.031	35.817	36.514	0.078827					63	27	3	0	0	0	0.038996	1	5972	5972		45.74	11.338	1	416660			18564	1577	12267	12389	25170	25170					0.012977401068042127
SALEKFFYF	9	Unmodified	_SALEKFFYF_					0	0	0		ENST00000586972.1_1_17:40265669-40266402:-|nuORF;nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A	ENST00000586972.1_1_17:40265669-40266402:-|nuORF	ENST00000586972.1_1_17:40265669-40266402:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.292236328125	2	576.292225	1150.5699	0.27736	0.00015984	1.9913	0.0011476	2.2687	0.0013074	576.2933962703241	78.069	1.1261	78.069	77.555	78.681	0					66	38	2	0	0	0	0.088609	1	18852	18852		34.932	7.3033	1	242450			18565	1606	12268	12390	25171	25171					0.0006351124582124612
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7608642578125	2	480.761092	959.507631	-0.0081301	-3.9087E-06	0.23321	0.00011212	0.22508	0.00010821	480.76103860629837	53.269	0.67857	53.269	53.06	53.739	0					53	27	3	0	0	0	0.026209	3	11302	11302;11351;11358		53.833	0	1	323720			18566	7489	12269	12391	25172;25173;25174	25172					0.026257848974864828
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.76116943359375	2	480.761092	959.507631	0.12723	6.1166E-05	0.084113	4.0438E-05	0.21134	0.0001016	480.7609145154963	53.249	0.52	53.314	53.107	53.627	0.06543					51	25	3	0	0	0	0.065576	2	11151	11151;11193		39.95	0	1	261330			18567	7489	12269	12391	25175;25176	25175					0.026257848974864828
SALQELEEL	9	Unmodified	_SALQELEEL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2666015625	2	516.266404	1030.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.835	1	75.835	75.335	76.335	0								0	0	0	0.0040281	1	18190	18190		76.825	3.8568	1				18568	340	12270	12392	25177	25177					0.004217227612343777
SALQELEEL	9	Unmodified	_SALQELEEL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2664794921875	2	516.266404	1030.51826	0.40054	0.00020679	0.0065482	3.3806E-06	0.40709	0.00021017	516.2662458335567	75.717	0.34413	75.761	75.569	75.913	0.044037					27	20	2	0	0	0	0.0068798	1	17997	17997		76.825	7.7199	1	1195800			18569	340	12270	12392	25178	25178					0.004217227612343777
SALRFRWR	8	Unmodified	_SALRFRWR_					0	0	0		ENST00000399753.2_1_16:1993107-1993194:-|nuORF	ENST00000399753.2_1_16:1993107-1993194:-|nuORF	ENST00000399753.2_1_16:1993107-1993194:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7664794921875	2	546.314692	1090.61483	0.1078	5.8891E-05	-1.5615	-0.00085309	-1.4537	-0.0007942	546.3139236229133	20.732	0.080975	20.832	20.799	20.88	0.099499					10	8	2	0	0	0	0.3576	1	1576	1576		0.69038	0	1	9829.7			18570	6360	12271	12393	25179	25179					0.07314799622372448
SANFSGRMPCI	11	Unmodified	_SANFSGRMPCI_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.7744750976562	2	591.773351	1181.53215	0.42428	0.00025108	0.99106	0.00058648	1.4153	0.00083756	591.773994597382	96.463	0.59389	96.463	96.257	96.851	0					71	27	5	0	0	0	0.40055	1	24498	24498		4.1895	0.59301	1	665190			18571	404	12272	12394	25180	25180					-0.05135646282951711
SANFSGRMPCI	11	Unmodified	_SANFSGRMPCI_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.7740478515625	2	591.773351	1181.53215	0.46934	0.00027774	0.91522	0.0005416	1.3846	0.00081935	591.7738846114066	96.446	0.59703	96.485	96.32	96.917	0.039772					68	31	4	0	0	0	0.40055	1	24288	24288		4.1895	1.1943	1	462850			18572	404	12272	12394	25181	25181					-0.05135646282951711
SANKIRKKI	9	Unmodified	_SANKIRKKI_					0	0	0		tr|U7SV67|U7SV67_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01147PE=4SV=1	tr|U7SV67|U7SV67_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01147PE=4SV=1	tr|U7SV67|U7SV67_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01147PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3825073242188	2	529.345658	1056.67676	0.29462	0.00015595	4.312	0.0022825	4.6066	0.0024385	529.3481265010487	109.2	0.085587	109.22	109.2	109.29	0.019402					15	11	2	0	0	0	0.25458	1	27934	27934		2.9952	0	1	1138900			18573	13623	12273	12395	25182	25182					0.15069106250848563
SANLEEVTM	9	Oxidation (M)	_SANLEEVTM(Oxidation (M))_		SANLEEVTM(1)		SANLEEVTM(170)	0	0	1		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.2289123535156	2	505.228965	1008.44338	-0.39041	-0.00019725	0.18082	9.1357E-05	-0.20959	-0.00010589	505.22908307930237	42.813	1.3505	42.813	42.423	43.773	0					105	47	4	0	0	0	6.155E-09	2	8133	8086;8133		165.72	110.95	1	1103200			18574	2275	12274	12396	25183;25184	25184		139			-0.060507830416327124
SANLEEVTM	9	Oxidation (M)	_SANLEEVTM(Oxidation (M))_		SANLEEVTM(1)		SANLEEVTM(130)	0	0	1		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.228759765625	2	505.228965	1008.44338	-0.28117	-0.00014205	-0.015504	-7.8329E-06	-0.29667	-0.00014989	505.2289641899608	45.233	2.0313	45.233	44.418	46.449	0					176	71	4	0	0	0	0.00041987	6	8907	8815;8860;8907;8950;9003;9052		133.05	93.095	1	634480			18575	2275	12274	12396	25185;25186;25187;25188;25189;25190	25187		139			-0.060507830416327124
SANLEEVTM	9	Oxidation (M)	_SANLEEVTM(Oxidation (M))_		SANLEEVTM(1)		SANLEEVTM(170)	0	0	1		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.22900390625	2	505.228965	1008.44338	-0.2283	-0.00011535	0.16465	8.3186E-05	-0.063655	-3.216E-05	505.22906397020864	42.684	1.4455	42.774	42.401	43.847	0.089767					114	53	5	0	0	0	6.155E-09	2	7974	7930;7974		165.72	113.45	1	1000200			18576	2275	12274	12396	25191;25192	25192		139			-0.060507830416327124
SANLEEVTM	9	Oxidation (M)	_SANLEEVTM(Oxidation (M))_		SANLEEVTM(1)		SANLEEVTM(120)	0	0	1		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.22906494140625	2	505.228965	1008.44338	-0.018169	-9.1794E-06	0.044243	2.2353E-05	0.026075	1.3174E-05	505.22894644689643	45.217	1.8327	45.304	44.595	46.428	0.087543					160	69	3	0	0	0	0.0011184	6	8698	8656;8698;8737;8780;8828;8874		121.53	81.577	1	555350			18577	2275	12274	12396	25193;25194;25195;25196;25197;25198	25194		139			-0.060507830416327124
SANLEEVTM	9	Unmodified	_SANLEEVTM_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2314758300781	2	497.231507	992.448462	0.70014	0.00034813	-0.94782	-0.00047128	-0.24768	-0.00012315	497.2310478648439	54.761	0.38132	54.826	54.65	55.032	0.065128					38	16	3	0	0	0	0.032194	1	11614	11614		49.554	15.452	1	246760			18578	2275	12274	12397	25199	25199					-0.048064791790238814
SANLFYSDD	9	Unmodified	_SANLFYSDD_					0	0	0		ENST00000592787.2_1_19:2271460-2271954:+|nuORF;ENSG00000104904|ENST00000602676|OAZ1	ENST00000592787.2_1_19:2271460-2271954:+|nuORF	ENST00000592787.2_1_19:2271460-2271954:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2197875976562	2	516.219454	1030.42436	-0.14711	-7.5938E-05	1.2163	0.00062789	1.0692	0.00055195	516.2199916943395	45.312	0.96587	45.312	44.909	45.874	0					58	33	2	0	0	0	0.2546	1	8912	8912		12.241	1.4167	1	90525			18579	1443	12275	12398	25200	25200					-0.08963996341026359
SANLFYSDD	9	Unmodified	_SANLFYSDD_					0	0	0		ENST00000592787.2_1_19:2271460-2271954:+|nuORF;ENSG00000104904|ENST00000602676|OAZ1	ENST00000592787.2_1_19:2271460-2271954:+|nuORF	ENST00000592787.2_1_19:2271460-2271954:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2200317382812	2	516.219454	1030.42436	-0.13127	-6.7764E-05	1.1082	0.00057206	0.97691	0.0005043	516.220011974874	42.78	0.59116	42.87	42.547	43.138	0.089764					42	22	2	0	0	0	0.22083	1	8009	8009		16.149	1.3108	1	121400			18580	1443	12275	12398	25201	25201					-0.08963996341026359
SANTRAIYLN	10	Unmodified	_SANTRAIYLN_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8192138671875	2	561.798737	1121.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.95	1	62.95	62.45	63.45	0								0	0	0	0.26818	1	14258	14258		21.537	4.4241	1		+		18581	10624	12276	12399	25202	25202					0.026993423579142473
SANVPNASFL	10	Unmodified	_SANVPNASFL_					0	0	0			REV__ENST00000275364.7_1_7:2768995-2769262:-|nuORF	REV__ENST00000275364.7_1_7:2768995-2769262:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7837219238281	2	510.261456	1018.50836	0.23038	0.00011755	1.8772	0.00095786	2.1076	0.0010754	510.26252414136127	90.305	0.29172	90.305	90.231	90.523	0					12	10	2	0	0	0	0.31667	1	22640	22640		8.7454	0.58988	1	58391	+		18582	11282	12277	12400	25203	25203					-0.00015420453485148755
SAPCAPFF	8	Unmodified	_SAPCAPFF_					0	0	0			REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.1913146972656	2	420.191457	838.368361	0.52282	0.00021969	-0.5309	-0.00022308	-0.0080818	-3.3959E-06	420.1911384854018	87.462	1.2852	87.462	86.895	88.181	0					107	50	3	0	0	0	0.53771	2	21708	21708;21751		2.8892	0	1	643260	+		18583	12273	12278	12401	25204;25205	25204					-0.0572887599155365
SAPCAPFF	8	Unmodified	_SAPCAPFF_					0	0	0			REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.1912841796875	2	420.191457	838.368361	0.045039	1.8925E-05	-0.1043	-4.3827E-05	-0.059264	-2.4902E-05	420.19135421328343	87.365	0.98857	87.393	86.944	87.933	0.027573					88	39	3	0	0	0	0.54081	2	21526	21526;21572		0.79363	0	1	670670	+		18584	12273	12278	12401	25206;25207	25206					-0.0572887599155365
SAPCAPFF	8	Unmodified	_SAPCAPFF_					0	0	0			REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.19110107421875	2	420.191457	838.368361	0.17423	7.3208E-05	-0.1686	-7.0843E-05	0.0056288	2.3652E-06	420.1913657841111	88.125	1.0689	88.155	87.906	88.975	0.030037					79	41	2	0	0	0	0.54081	1	21927	21927		0.79363	0	1	245080	+		18585	12273	12278	12401	25208	25208					-0.0572887599155365
SAPCAPFF	8	Unmodified	_SAPCAPFF_					0	0	0			REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.19140625	2	420.191457	838.368361	0.075493	3.1721E-05	-0.093516	-3.9295E-05	-0.018023	-7.5732E-06	420.191409025911	89.041	0.81721	89.073	88.977	89.794	0.032257					44	31	2	0	0	0	0.53771	2	22151	22067;22151		2.8892	0	1	134100	+		18586	12273	12278	12401	25209;25210	25210					-0.0572887599155365
SAPFLAAGVSM	11	Unmodified	_SAPFLAAGVSM_					0	0	0		ENST00000578270.5_1_18:19244077-19283696:-|nuORF;ABHD3|p.P261Lfs*5|1|0.28|ENSG00000158201|chr18:21659223-21659230|GTTCAGTG/-|frameshift_variant;ENSG00000158201|ENST00000289119|ABHD3	ENST00000578270.5_1_18:19244077-19283696:-|nuORF	ENST00000578270.5_1_18:19244077-19283696:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3131713867188	2	525.76806	1049.52157	0.1362	7.1608E-05	0.18654	9.8074E-05	0.32273	0.00016968	525.7679913322335	71.631	0.49898	71.69	71.346	71.844	0.058578					31	17	2	0	0	0	0.30979	1	16661	16661		11.495	2.9014	1	174150			18587	4	12279	12402	25211	25211					-0.001213056657661582
SAPLLLHTLER	11	Unmodified	_SAPLLLHTLER_					0	0	0			REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3689575195312	2	625.366787	1248.71902	-0.039573	-2.4748E-05	0.45981	0.00028755	0.42023	0.0002628	625.3673314330842	103.6	0.27484	103.6	103.43	103.71	0					36	29	2	0	0	0	0.40693	1	26629	26629		2.7352	0	1	169960	+		18588	12137	12280	12403	25212	25212					0.10461036868559859
SAPMEGCFSSR	11	Unmodified	_SAPMEGCFSSR_					0	0	0			REV__ENSG00000110446|ENST00000227880|SLC15A3	REV__ENSG00000110446|ENST00000227880|SLC15A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7490234375	2	586.247166	1170.47978	0.5834	0.00034202	0.4465	0.00026176	1.0299	0.00060378	586.7490498204007	95.188	0.34655	95.227	95.017	95.364	0.038872					22	13	2	0	0	0	0.40891	1	23929	23929		2.2828	0	1	108150	+		18589	8668	12281	12404	25213	25213					-0.09864229416575654
SAPPLSVPL	9	Unmodified	_SAPPLSVPL_					0	0	0			REV__nc|ENSG00000126733|Q96NX9-3|DACH2	REV__nc|ENSG00000126733|Q96NX9-3|DACH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7603454589844	2	440.760561	879.506569	0.44216	0.00019488	-0.4972	-0.00021915	-0.055045	-2.4262E-05	440.76029333011513	59.717	0.5358	59.717	59.481	60.017	0					33	20	2	0	0	0	0.17247	1	13244	13244		21.747	0	1	190350	+		18590	7870	12282	12405	25214	25214					0.06199570528565346
SAPPLSVPL	9	Unmodified	_SAPPLSVPL_					0	0	0			REV__nc|ENSG00000126733|Q96NX9-3|DACH2	REV__nc|ENSG00000126733|Q96NX9-3|DACH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.72076416015625	2	440.760561	879.506569	0.44216	0.00019488	-0.4972	-0.00021915	-0.055045	-2.4262E-05	440.76029333011513	59.717	0.5358	59.717	59.481	60.017	0					33	20	2	0	0	0	0.20845	1	13311	13311		21.747	0	1	190350	+		18591	7870	12282	12405	25215	25215					0.06199570528565346
SAPPLSVPL	9	Unmodified	_SAPPLSVPL_					0	0	0			REV__nc|ENSG00000126733|Q96NX9-3|DACH2	REV__nc|ENSG00000126733|Q96NX9-3|DACH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7211608886719	2	440.760561	879.506569	0.060137	2.6506E-05	-0.15813	-6.97E-05	-0.097998	-4.3194E-05	440.7603298310013	59.628	0.52568	59.7	59.491	60.016	0.072338					36	20	2	0	0	0	0.23598	1	13072	13072		15.847	0	1	160520	+		18592	7870	12282	12405	25216	25216					0.06199570528565346
SAPRPASHPVW	11	Unmodified	_SAPRPASHPVW_					0	0	0		SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|24|3|sense	SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|24|3|sense	SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|24|3|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8128051757812	2	602.814722	1203.61489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.72	1	106.74	106.24	107.24	0.025711								0	0	0	0.33873	1	27327	27327		1.1933	0.66858	1				18593	13418	12283	12406	25217	25217					0.021227548317028777
SAQCVRLTPF	10	Unmodified	_SAQCVRLTPF_					0	0	0			REV__ENST00000412523.3_2_17:42980212-42980554:+|nuORF	REV__ENST00000412523.3_2_17:42980212-42980554:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8295288085938	2	561.292233	1120.56991	0.86292	0.00048435	0.37282	0.00020926	1.2357	0.00069362	561.2926749703641	80.937	0.64011	80.937	80.625	81.265	0					37	21	2	0	0	0	0.30541	1	19693	19693		19.257	1.1106	1	90546	+		18594	11782	12284	12407	25218	25218					0.014451879741272933
SAQDFWTF	8	Unmodified	_SAQDFWTF_					0	0	0		ENSG00000235387|ENST00000443779|SPAAR;nc|ENSG00000235387|A0A1B0GVQ0|SPAAR	ENSG00000235387|ENST00000443779|SPAAR	ENSG00000235387|ENST00000443779|SPAAR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7296447753906	2	501.2218	1000.42905	-0.060265	-3.0206E-05	-0.63265	-0.0003171	-0.69292	-0.0003473	501.2214538418061	25.569	0.96406	25.661	25.444	26.408	0.091507					140	81	3	0	0	0	0.3576	1	3042	3042		0.69038	0.69038	1	40578			18595	5628	12285	12408	25219	25219					-0.07115067407619335
SAQEQTEYLF	10	Unmodified	_SAQEQTEYLF_					0	0	0			REV__ENST00000311172.11_1_11:72549399-72549570:-|nuORF	REV__ENST00000311172.11_1_11:72549399-72549570:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.281494140625	2	608.280043	1214.54553	0.594	0.00036132	2.2478	0.0013673	2.8419	0.0017286	608.2813686386182	88.424	0.79068	88.424	88.165	88.956	0					61	31	3	0	0	0	0.32016	1	22014	22014		20.415	8.1739	1	315960	+		18596	11372	12286	12409	25220	25220					-0.05315793698378002
SAQEQTEYLF	10	Unmodified	_SAQEQTEYLF_					0	0	0			REV__ENST00000311172.11_1_11:72549399-72549570:-|nuORF	REV__ENST00000311172.11_1_11:72549399-72549570:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.8469848632812	2	608.280043	1214.54553	0.62219	0.00037847	2.3089	0.0014045	2.9311	0.0017829	608.2813244686768	88.33	0.84663	88.36	88.11	88.957	0.030037					68	33	3	0	0	0	0.31481	1	21810	21810		15.248	4.449	1	288490	+		18597	11372	12286	12409	25221	25221					-0.05315793698378002
SAQIELDSL	9	Unmodified	_SAQIELDSL_					0	0	0			REV__nc|ENSG00000162086|Q96N20|ZNF75A	REV__nc|ENSG00000162086|Q96N20|ZNF75A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.25335693359375	2	488.253297	974.492041	0.40191	0.00019624	-0.13583	-6.6321E-05	0.26608	0.00012991	488.2531500170559	64.219	1.1387	64.219	63.998	65.137	0					88	40	4	0	0	0	0.0040275	3	14667	14622;14667;14711		103.35	0	1	1463700	+		18598	9875	12287	12410	25222;25223;25224	25223					0.0037745358977190335
SAQIELDSL	9	Unmodified	_SAQIELDSL_					0	0	0			REV__nc|ENSG00000162086|Q96N20|ZNF75A	REV__nc|ENSG00000162086|Q96N20|ZNF75A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2533264160156	2	488.253297	974.492041	0.52098	0.00025437	-0.35881	-0.00017519	0.16216	7.9177E-05	488.25311193176344	65.407	0.74231	65.407	65.137	65.879	0					60	26	3	0	0	0	0.0044564	1	15015	15015		92.653	0	1	386310	+		18599	9875	12287	12410	25225	25225					0.0037745358977190335
SAQIELDSL	9	Unmodified	_SAQIELDSL_					0	0	0			REV__nc|ENSG00000162086|Q96N20|ZNF75A	REV__nc|ENSG00000162086|Q96N20|ZNF75A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.25335693359375	2	488.253297	974.492041	0.3047	0.00014877	-0.01467	-7.1627E-06	0.29003	0.00014161	488.25321196683905	64.198	0.79517	64.269	63.999	64.794	0.071022					72	28	4	0	0	0	0.0043658	1	14493	14493		96.111	0	1	915160	+		18600	9875	12287	12410	25226	25226					0.0037745358977190335
SAQIELDSL	9	Unmodified	_SAQIELDSL_					0	0	0			REV__nc|ENSG00000162086|Q96N20|ZNF75A	REV__nc|ENSG00000162086|Q96N20|ZNF75A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2532653808594	2	488.253297	974.492041	0.33709	0.00016458	-0.11583	-5.6552E-05	0.22126	0.00010803	488.25317129713164	65.341	0.92308	65.41	64.867	65.79	0.068916					53	35	3	0	0	0	0.080641	1	14855	14855		51.63	0	1	574300	+		18601	9875	12287	12410	25227	25227					0.0037745358977190335
SAQLRHHL	8	Unmodified	_SAQLRHHL_					0	0	0			REV__chr17:78479632-78480684|403|19.2|0.55|5.12|-|2|DNAH17,DNAH17|1	REV__chr17:78479632-78480684|403|19.2|0.55|5.12|-|2|DNAH17,DNAH17|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.25213623046875	2	481.26995	960.525347	-0.40525	-0.00019504	-1.3015	-0.00062639	-1.7068	-0.00082143	481.2692836671059	28.556	0.22389	28.556	28.423	28.647	0					13	8	2	0	0	0	0.3576	1	3857	3857		0.69038	0	1	17348	+		18602	7793	12288	12411	25228	25228					0.043505449429858345
SAQLRHHL	8	Unmodified	_SAQLRHHL_					0	0	0			REV__chr17:78479632-78480684|403|19.2|0.55|5.12|-|2|DNAH17,DNAH17|1	REV__chr17:78479632-78480684|403|19.2|0.55|5.12|-|2|DNAH17,DNAH17|1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	481.26995	960.525347	-0.38313	-0.00018439	-0.85142	-0.00040976	-1.2345	-0.00059415	481.2695549965409	28.451	0.24955	28.533	28.436	28.686	0.082132	-0.011617	0.0002833	NaN	0.69038	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15581	+		18603	7793	12288	12411							0.043505449429858345
SAQPAEQEL	9	Unmodified	_SAQPAEQEL_					0	0	0		ENSG00000167705|ENST00000301336|RILP	ENSG00000167705|ENST00000301336|RILP	ENSG00000167705|ENST00000301336|RILP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.73504638671875	2	486.735271	971.45599	0.054598	2.6575E-05	-0.0078065	-3.7997E-06	0.046791	2.2775E-05	486.73517302949955	37.099	0.60311	37.099	36.917	37.52	0					48	23	3	0	0	0	0.17382	2	6400	6400;6445		21.59	7.6841	1	181650			18604	4226	12289	12412	25229;25230	25229					-0.030880035871064138
SAQPAEQEL	9	Unmodified	_SAQPAEQEL_					0	0	0		ENSG00000167705|ENST00000301336|RILP	ENSG00000167705|ENST00000301336|RILP	ENSG00000167705|ENST00000301336|RILP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7353820800781	2	486.735271	971.45599	0.069276	3.3719E-05	-0.067234	-3.2725E-05	0.0020416	9.9371E-07	486.73520261815395	36.976	0.4748	37.058	36.896	37.371	0.081715					34	17	3	0	0	0	0.14539	2	6265	6265;6312		24.882	7.7687	1	170500			18605	4226	12289	12412	25231;25232	25231					-0.030880035871064138
SAQVEELAF	9	Unmodified	_SAQVEELAF_					0	0	0		ENST00000508836.1_1_4:159590767-159593157:-|nuORF;ENSG00000205208|ENST00000379205|C4orf46	ENST00000508836.1_1_4:159590767-159593157:-|nuORF	ENST00000508836.1_1_4:159590767-159593157:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2355041503906	2	497.248015	992.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.113	1	48.193	47.693	48.693	0.080029								0	0	0	0.25692	1	9611	9611		7.9102	1.5561	1				18606	5510	12290	12413	25233	25233					-0.015065290646703033
SARCSSPFF	9	Unmodified	_SARCSSPFF_					0	0	0		ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.22930908203125	2	501.229102	1000.44365	0.45547	0.0002283	0.39558	0.00019828	0.85106	0.00042657	501.229244717265	88.285	0.60152	88.285	88.004	88.605	0					55	22	5	0	0	0	0.32375	1	21970	21970		3.5965	0.60125	1	410690			18607	51	12291	12414	25234	25234					-0.05655318531114517
SARCSSPFF	9	Unmodified	_SARCSSPFF_					0	0	0		ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2294006347656	2	501.229102	1000.44365	0.34308	0.00017196	0.44119	0.00022114	0.78427	0.0003931	501.2292254557957	88.256	0.48928	88.286	88.023	88.513	0.030037					53	17	5	0	0	0	0.30005	1	21795	21795		6.7232	0.96273	1	283820			18608	51	12291	12414	25235	25235					-0.05655318531114517
SASDIEHVI	9	Unmodified	_SASDIEHVI_					0	0	0			REV__ENSG00000182324|ENST00000342291|KCNJ14	REV__ENSG00000182324|ENST00000342291|KCNJ14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7455749511719	2	485.745639	969.476725	-0.042981	-2.0878E-05	-0.42609	-0.00020697	-0.46907	-0.00022785	485.7455377795879	49.475	0.36489	49.475	49.314	49.679	0					25	12	3	0	0	0	0.23975	1	10158	10158		14.838	0	1	112910	+		18609	10558	12292	12415	25236	25236					-0.00923413207442536
SASEKELAL	9	Unmodified	_SASEKELAL_					0	0	0		nc|ENSG00000136122|Q6PGQ7-2|BORA;ENSG00000136122|ENST00000390667|BORA	nc|ENSG00000136122|Q6PGQ7-2|BORA	nc|ENSG00000136122|Q6PGQ7-2|BORA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2558898925781	2	474.25584	946.497126	0.060804	2.8837E-05	-0.10918	-5.1778E-05	-0.048373	-2.2941E-05	474.2557192937319	38.139	0.44105	38.226	38.047	38.488	0.08688					37	16	3	0	0	0	0.23908	1	6600	6600		16.149	2.2431	1	89381			18610	2769	12293	12416	25237	25237					0.02173757452362679
SASFDHTI	8	Unmodified	_SASFDHTI_					0	0	0		SMU1|p.Q329H|1|0.05|ENSG00000122692|chr9:33056845-33056845|C/G|missense_variant	SMU1|p.Q329H|1|0.05|ENSG00000122692|chr9:33056845-33056845|C/G|missense_variant	SMU1|p.Q329H|1|0.05|ENSG00000122692|chr9:33056845-33056845|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.205810546875	2	439.20615	876.397747	0.039359	1.7287E-05	-0.0034123	-1.4987E-06	0.035946	1.5788E-05	439.206042042974	32.633	0.48804	32.633	32.47	32.958	0					48	23	3	0	0	0	0.41225	1	5067	5067		24.674	0	1	85925			18611	13374	12294	12417	25238	25238					-0.04539640441703341
SASGWCFFTL	10	Unmodified	_SASGWCFFTL_					0	0	0		ENST00000509621.1_3_5:89989878-90055411:+|nuORF;ENSG00000164199|ENST00000405460|ADGRV1	ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENST00000509621.1_3_5:89989878-90055411:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2749633789062	2	559.75241	1117.49027	-0.046822	-2.6209E-05	0.32089	0.00017962	0.27407	0.00015341	559.7523784775901	29.746	2.0279	29.746	29.404	31.432	0					214	101	3	0	0	0	0.45627	1	4525	4525		3.5965	3.5965	1	93825			18612	3991	12295	12418	25239	25239					-0.06377878699845496
SASLYFTCTL	10	Unmodified	_SASLYFTCTL_					0	0	0		TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2681884765625	2	553.26535	1104.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.164	1	30.164	29.664	30.664	0								0	0	0	0.33156	1	4346	4346		10.074	0	1				18613	547	12296	12419	25240	25240					-0.03193029248200219
SASPHKDLPN	10	Unmodified	_SASPHKDLPN_					0	0	0		nc|ENSG00000095627|Q9BXT4-4|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1;ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2694091796875	2	533.269813	1064.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.647	1	27.647	27.147	28.147	0								0	0	0	0.33599	1	3607	3607		4.897	0.56777	1				18614	1102	12297	12420	25241	25241					-0.004609195675357114
SASQTRDVL	9	Unmodified	_SASQTRDVL_					0	0	0		nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7568664550781	2	488.756538	975.498523	-0.25303	-0.00012367	0.71581	0.00034986	0.46279	0.00022619	488.75699624418553	28.326	0.43886	28.326	28.073	28.512	0					32	22	2	0	0	0	0.2546	1	3783	3783		12.241	5.5175	1	54775			18615	4661	12298	12421	25242	25242					0.009793915411478338
SASQTRDVL	9	Unmodified	_SASQTRDVL_					0	0	0		nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	488.756538	975.498523	-0.23487	-0.00011479	0.93374	0.00045637	0.69887	0.00034158	488.75697884191044	28.211	0.36757	28.293	28.069	28.436	0.082134	-0.016622	0.00013647	NaN	12.241	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40892			18616	4661	12298	12421							0.009793915411478338
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.261962890625	2	508.261988	1014.50942	-0.43811	-0.00022267	-0.011802	-5.9986E-06	-0.44991	-0.00022867	508.261956399421	15.043	0.16876	15.043	14.977	15.146	0					33	21	2	0	0	0	0.41617	1	481	481		10.151	5.2536	1	19957			18617	6160	12299	12422	25243	25243					0.002747939154346568
SASSEVAFL	9	Unmodified	_SASSEVAFL_					0	0	0		ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.7296142578125	2	455.729458	909.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.957	1	59.028	58.528	59.528	0.070477								0	0	0	0.20792	1	12904	12904		16.942	2.104	1				18618	2348	12300	12423	25244	25244					-0.013982006104129141
SASSKEPAM	9	Unmodified	_SASSKEPAM_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.21282958984375	2	454.213117	906.411682	-0.16704	-7.5871E-05	-0.27934	-0.00012688	-0.44638	-0.00020275	454.21291073595626	21.44	0.60433	21.44	21.276	21.881	0					97	60	2	0	0	0	0.17428	1	1842	1842		21.537	6.6987	1	77973			18619	5376	12301	12424	25245	25245					-0.04526731004921203
SASSKEPAM	9	Unmodified	_SASSKEPAM_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	454.213117	906.411682	-0.022811	-1.0361E-05	-0.29417	-0.00013362	-0.31698	-0.00014398	454.21290070554477	21.263	0.36283	21.363	21.236	21.599	0.099499	-0.038966	-7.9201E-06	NaN	21.537	70	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76638			18620	5376	12301	12424							-0.04526731004921203
SASSVTVTR	9	Unmodified	_SASSVTVTR_					0	0	0		nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF	nc|ENSG00000160789|P02545-5|LMNA	nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2455139160156	2	454.245806	906.47706	-0.14638	-6.6491E-05	-0.24705	-0.00011222	-0.39343	-0.00017871	454.2456329514585	22.376	0.8566	22.376	22.169	23.025	0					196	72	4	0	0	0	0.002259	4	2116	2081;2116;2158;2198		114.19	41.218	1	640620			18621	3778	12302	12425	25246;25247;25248;25249	25247					0.02008006512448901
SASSVTVTR	9	Unmodified	_SASSVTVTR_					0	0	0		nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF	nc|ENSG00000160789|P02545-5|LMNA	nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.2455749511719	2	454.245806	906.47706	-0.051995	-2.3619E-05	-0.22068	-0.00010024	-0.27268	-0.00012386	454.24566999314357	22.218	0.78077	22.32	22.122	22.903	0.10178					166	70	4	0	0	0	0.00090591	3	1969	1932;1969;2003		125.04	42.508	1	572150			18622	3778	12302	12425	25250;25251;25252	25251					0.02008006512448901
SASTPSTLAL	10	Unmodified	_SASTPSTLAL_					0	0	0		ENST00000487233.1_1_2:217364074-217364125:+|nuORF;ENST00000427280.6_1_2:217364074-217364681:+|nuORF	ENST00000487233.1_1_2:217364074-217364125:+|nuORF	ENST00000487233.1_1_2:217364074-217364125:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2558288574219	2	474.25584	946.497126	0.078387	3.7176E-05	-0.046266	-2.1942E-05	0.032122	1.5234E-05	474.2557019158735	38.217	0.43803	38.217	38.017	38.455	0					33	14	3	0	0	0	0.31496	1	6744	6744		13.906	0	1	105000			18623	6476	12303	12426	25253	25253					0.02173757452362679
SASTSSHNL	9	Unmodified	_SASTSSHNL_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2115173339844	2	452.211963	902.409374	-0.2212	-0.00010003	-0.54673	-0.00024724	-0.76793	-0.00034727	452.21160732009736	18.802	0.47577	18.802	18.664	19.14	0					126	55	3	0	0	0	0.18398	1	1213	1213		20.415	2.2682	1	165910			18624	458	12304	12427	25254	25254					-0.04573443418382794
SASTSSHNL	9	Unmodified	_SASTSSHNL_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	452.211963	902.409374	0.052501	2.3742E-05	-0.77951	-0.0003525	-0.72701	-0.00032876	452.21157690750994	18.743	0.2464	18.833	18.725	18.972	0.089705	0.015086	-0.00015863	NaN	20.415	49	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26762			18625	458	12304	12427							-0.04573443418382794
SASVHPLID	9	Unmodified	_SASVHPLID_					0	0	0		ENST00000537488.1_1_12:7048306-7050940:+|nuORF;ENSG00000111676|ENST00000396684|ATN1	ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENST00000537488.1_1_12:7048306-7050940:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2684326171875	2	469.750724	937.486896	0.043537	2.0452E-05	0.22023	0.00010345	0.26377	0.0001239	469.7505757181767	52.12	0.33715	52.12	51.937	52.274	0					19	11	2	0	0	0	0.23598	1	10956	10956		15.847	0	1	68017			18626	1720	12305	12428	25255	25255					0.01565194517809232
SATAAEAVSA	10	Unmodified	_SATAAEAVSA_					0	0	0		ENST00000465591.1_1_20:62368003-62369414:+|nuORF	ENST00000465591.1_1_20:62368003-62369414:+|nuORF	ENST00000465591.1_1_20:62368003-62369414:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.86297607421875	2	439.216714	876.418876	-0.19096	-8.3872E-05	0.023451	1.03E-05	-0.16751	-7.3572E-05	439.21657845039454	40.768	0.56584	40.768	40.481	41.046	0					28	19	2	0	0	0	0.31643	1	7520	7520		9.3831	0	1	52890			18627	6632	12306	12429	25256	25256					-0.02427675132855711
SATERCCSL	9	Unmodified	_SATERCCSL_					0	0	0			REV__nc|ENSG00000140391|O60637-3|TSPAN3	REV__nc|ENSG00000140391|O60637-3|TSPAN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2084045410156	2	485.210052	968.405551	-0.17323	-8.4051E-05	-2.4984	-0.0012122	-2.6716	-0.0012963	485.2088249196466	58.267	0.21702	58.267	58.256	58.473	0					13	8	2	0	0	0	0.32831	1	12850	12850		2.9952	0	1	89432	+		18628	9368	12307	12430	25257	25257					-0.07991572508103673
SATLVDEVF	9	Unmodified	_SATLVDEVF_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.75048828125	2	490.75039	979.486227	0.35769	0.00017554	0.028102	1.3791E-05	0.38579	0.00018933	490.75024947944223	74.526	0.51343	74.526	74.341	74.854	0					44	18	3	0	0	0	0.011655	2	17773	17773;17822		64.236	22.142	1	406280			18629	2017	12308	12431	25258;25259	25258					-0.004336449219067617
SATLVDEVF	9	Unmodified	_SATLVDEVF_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7506103515625	2	490.75039	979.486227	0.37268	0.00018289	0.031335	1.5377E-05	0.40402	0.00019827	490.7502882944133	74.455	0.55563	74.504	74.316	74.872	0.048546					47	19	4	0	0	0	0.015682	2	17603	17603;17654		61.357	21.4	1	545290			18630	2017	12308	12431	25260;25261	25260					-0.004336449219067617
SATVKDYEL	9	Unmodified	_SATVKDYEL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2611694335938	2	513.261122	1024.50769	-0.31814	-0.00016329	0.43429	0.00022291	0.11615	5.9616E-05	513.2612795348721	40.794	1.0785	40.794	40.53	41.609	0					108	38	5	0	0	0	0.0039507	2	7546	7500;7546		103.82	53.891	1	1458200			18631	7529;3480	12309	12432	25262;25263	25263					-0.0035825989318709617
SATVKDYEL	9	Unmodified	_SATVKDYEL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2611694335938	2	513.261122	1024.50769	-0.17417	-8.9395E-05	0.33318	0.00017101	0.15901	8.1612E-05	513.2612533621784	40.717	0.85215	40.806	40.546	41.398	0.089645					93	31	4	0	0	0	0.0039507	2	7386	7343;7386		103.82	53.891	1	1140200			18632	7529;3480	12309	12432	25264;25265	25265					-0.0035825989318709617
SAVDENNKL	9	Unmodified	_SAVDENNKL_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7745056152344	2	495.248546	988.482539	-0.010041	-4.9728E-06	-0.38604	-0.00019118	-0.39608	-0.00019616	495.248337128443	27.102	0.40599	27.102	26.891	27.297	0					49	28	2	0	0	0	0.25787	1	3454	3454		2.9952	2.9952	1	47572			18633	4475	12310	12433	25266	25266					-0.012163146957732351
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.773681640625	2	450.773668	899.532783	0.93712	0.00042243	-0.76207	-0.00034352	0.17505	7.8907E-05	450.7732481097984	80.181	0.91661	80.181	79.897	80.813	0					60	31	3	0	0	0	0.0076571	3	19486	19486;19540;19596		74.423	10.86	1	1904000			18634	7381	12311	12434	25267;25268;25269	25267					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.7737121582031	2	450.773668	899.532783	0.47678	0.00021492	-0.25922	-0.00011685	0.21756	9.8069E-05	450.7734388972392	80.121	0.94225	80.148	79.911	80.853	0.026192					76	33	3	0	0	0	0.0046476	3	19370	19370;19466;19514		85.357	14.641	1	1464600			18635	7381	12311	12434	25270;25271;25272	25270					0.07899839700041866
SAVEWEETL	9	Unmodified	_SAVEWEETL_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2509765625	2	532.250754	1062.48696	0.84425	0.00044936	-0.86139	-0.00045847	-0.017134	-9.1194E-06	532.2504868586233	67.057	0.36404	67.122	66.9	67.264	0.065071					18	12	2	0	0	0	0.15282	1	15382	15382		24.021	5.6475	1	143990			18636	5581	12312	12435	25273	25273					-0.0417885027286502
SAVEWEETL	9	Unmodified	_SAVEWEETL_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.250754	1062.48696	0.6568	0.00034958	-0.98808	-0.00052591	-0.33128	-0.00017632	532.2500496819679	67.081	0.40266	67.081	66.929	67.332	0	-0.020464	-8.4748E-05	NaN	24.021	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96547			18637	5581	12312	12435							-0.0417885027286502
SAVKGDEKM	9	Unmodified	_SAVKGDEKM_					0	0	0		ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7418212890625	2	482.742042	963.469531	-0.64398	-0.00031088	0.10235	4.9409E-05	-0.54163	-0.00026147	482.7420301955602	17.131	0.37627	17.131	17.014	17.391	0					89	46	3	0	0	0	0.085487	1	867	867		35.612	16.25	1	83962			18638	2018	12313	12436	25274	25274					-0.013664690794939816
SAVKGDEKM	9	Unmodified	_SAVKGDEKM_					0	0	0		ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	482.742042	963.469531	-0.05868	-2.8328E-05	-0.19336	-9.3342E-05	-0.25204	-0.00012167	482.7418345704161	17.118	0.30436	17.202	17.077	17.381	0.083696	0.035583	-0.00018563	NaN	35.612	84	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94002			18639	2018	12313	12436							-0.013664690794939816
SAVVEDLLYVL	11	Unmodified	_SAVVEDLLYVL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.8424682617188	2	610.842279	1219.67001	0.3834	0.0002342	0.13884	8.4807E-05	0.52224	0.00031901	610.8422375015411	100.13	0.5125	100.13	99.9	100.41	0					65	27	3	0	0	0	0.044408	2	25560	25560;25604		72.968	36.841	1	776240			18640	2477	12314	12437	25275;25276	25275					0.06895703788950414
SAVVEDLLYVL	11	Unmodified	_SAVVEDLLYVL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.842529296875	2	610.842279	1219.67001	0.52491	0.00032064	0.00050133	3.0623E-07	0.52541	0.00032094	610.8422254305146	100	0.51993	100.05	99.924	100.44	0.042839					67	26	3	0	0	0	0.1051	2	25424	25382;25424		55.503	32.766	1	972250			18641	2477	12314	12437	25277;25278	25278					0.06895703788950414
SAVVHEYAL	9	Unmodified	_SAVVHEYAL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7583312988281	2	494.758549	987.502546	0.030772	1.5225E-05	-0.32535	-0.00016097	-0.29458	-0.00014574	494.7583025090907	43.554	1.5126	43.554	43.296	44.808	0					132	53	5	0	0	0	0.0064512	5	8368	8325;8368;8413;8457;8505		78.149	42.105	1	1885100			18642	619	12315	12438	25279;25280;25281;25282;25283	25280					0.008294810348388637
SAVVHEYAL	9	Unmodified	_SAVVHEYAL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7584228515625	2	494.758549	987.502546	0.091602	4.5321E-05	-0.14481	-7.1647E-05	-0.053211	-2.6326E-05	494.7583956223091	43.458	1.2133	43.547	43.298	44.512	0.088924					108	42	5	0	0	0	0.01943	3	8227	8179;8227;8275		58.679	28.454	1	1639800			18643	619	12315	12438	25284;25285;25286	25285					0.008294810348388637
SAVVRVFV	8	Unmodified	_SAVVRVFV_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.7695617675781	2	438.76872	875.522887	0.093597	4.1067E-05	0.88937	0.00039023	0.98297	0.00043129	438.76933721515366	109.98	0.40543	109.98	109.85	110.26	0					118	58	3	0	0	0	0.53494	1	28293	28293		4.756	0	1	2156800	+		18644	7934	12316	12439	25287	25287					0.0801469648533839
SAVVRVFV	8	Unmodified	_SAVVRVFV_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	438.76872	875.522887	0.093597	4.1067E-05	0.88937	0.00039023	0.98297	0.00043129	438.76933721515366	109.98	0.40543	109.98	109.85	110.26	0	-0.011935	0.00012902	NaN	4.756	118	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2156800	+		18645	7934	12316	12439							0.0801469648533839
SAWENGDPFCF	11	Unmodified	_SAWENGDPFCF_					0	0	0			REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D	REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.7532348632812	2	636.753138	1271.49172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.859	1	85.859	85.359	86.359	0								0	0	0	0.31505	1	21246	21246		9.544	1.3884	1		+		18646	9909	12317	12440	25288	25288					-0.13316289401745962
SAWGRGQAGP	10	Unmodified	_SAWGRGQAGP_					0	0	0			REV__ENST00000378392.5_1_20:10015715-10015934:+|nuORF	REV__ENST00000378392.5_1_20:10015715-10015934:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2475891113281	2	493.743765	985.472977	0.20436	0.0001009	0.56013	0.00027656	0.76449	0.00037746	493.74289036849467	35.258	0.56656	35.258	34.912	35.479	0					35	19	3	0	0	0	0.45443	1	5822	5822		3.9444	0.3479	1	34732	+		18647	11657	12318	12441	25289	25289					-0.02034038190629417
SAWHFPQGR	9	Unmodified	_SAWHFPQGR_					0	0	0		ENST00000566166.1_1_19:7982552-7983971:+|nuORF	ENST00000566166.1_1_19:7982552-7983971:+|nuORF	ENST00000566166.1_1_19:7982552-7983971:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2684326171875	2	543.267407	1084.52026	0.28356	0.00015405	2.0834	0.0011319	2.367	0.0012859	543.2684448693815	56.092	0.43124	56.158	55.981	56.412	0.066448					25	16	2	0	0	0	0.21398	1	12033	12033		16.942	4.7016	1	347990			18648	7179	12319	12442	25290	25290					-0.01861758919631029
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7564086914062	2	550.756007	1099.49746	0.3877	0.00021353	0.16377	9.0198E-05	0.55147	0.00030373	550.7561201588172	57.048	1.4922	57.048	56.725	58.217	0					158	51	5	0	0	0	1.1119E-05	7	12473	12430;12473;12520;12565;12610;12662;12706		147.83	115.05	1	8121900			18649	1937	12320	12443	25291;25292;25293;25294;25295;25296;25297	25292					-0.048308228277846865
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7843017578125	2	550.756007	1099.49746	0.06227	3.4295E-05	0.7952	0.00043796	0.85747	0.00047226	550.7565294837767	58.548	0.6465	58.548	58.256	58.903	0					33	23	2	0	0	0	0.18479	1	12903	12903		26.884	20.16	1	83635			18650	1937	12320	12443	25298	25298					-0.048308228277846865
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.75634765625	2	550.756007	1099.49746	0.51498	0.00028363	0.07407	4.0795E-05	0.58905	0.00032442	550.7560601359309	56.956	2.124	57.023	56.735	58.859	0.066452					176	78	5	0	0	0	1.1119E-05	7	12269	12269;12313;12357;12397;12448;12497;12542		147.83	118.75	1	6751800			18651	1937	12320	12443	25299;25300;25301;25302;25303;25304;25305	25299					-0.048308228277846865
SCCCCRWAW	9	Unmodified	_SCCCCRWAW_					0	0	0			REV__ENST00000596002.5_1_19:8373086-8373149:-|nuORF	REV__ENST00000596002.5_1_19:8373086-8373149:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.271240234375	2	559.195367	1116.37618	0.60628	0.00033903	2.3084	0.0012909	2.9147	0.0016299	559.1943078734766	55.397	0.088737	55.463	55.402	55.491	0.065128					4	2	2	0	0	0	0.25845	1	11810	11810		2.0598	1.2661	1	25738	+		18652	12608	12321	12444	25306	25306					-0.17735131329618525
SCCPGQHLTA	10	Unmodified	_SCCPGQHLTA_					0	0	0		ENST00000601322.5_2_19:6436333-6444241:-|nuORF;ENST00000264088.8_1_19:6436333-6444241:-|nuORF	ENST00000601322.5_2_19:6436333-6444241:-|nuORF	ENST00000601322.5_2_19:6436333-6444241:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.71795654296875	2	508.718044	1015.42154	-0.43181	-0.00021967	-0.19296	-9.8164E-05	-0.62478	-0.00031783	508.7181863169992	16.181	0.21151	16.181	16.074	16.286	0					35	26	2	0	0	0	0.4753	1	682	682		0	0	1	16778			18653	5884	12322	12445	25307	25307					-0.08555866271217383
SCCSTTCC	8	Unmodified	_SCCSTTCC_					0	0	0		ENSG00000198083|ENST00000394008|KRTAP9-9;nc|ENSG00000198083|Q9BYP9-2|KRTAP9-9	ENSG00000198083|ENST00000394008|KRTAP9-9	ENSG00000198083|ENST00000394008|KRTAP9-9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1911315917969	2	404.110635	806.206716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.523	1	57.523	57.023	58.023	0								0	0	0	0.38822	1	12607	12607		0	0	1				18654	5344	12323	12446	25308	25308					-0.20413872402821198
SCECEGPMC	9	Unmodified	_SCECEGPMC_					0	0	0			REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF	REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.64263916015625	2	479.642299	957.270045	-0.42804	-0.00020531	1.0126	0.00048568	0.58454	0.00028037	479.6427249710126	26.902	0.39556	26.902	26.724	27.12	0					46	28	2	0	0	0	0.35102	2	3374	3374;3413		0	0	1	20385	+		18655	12449	12324	12447	25309;25310	25309					-0.2102993168557532
SCECEGPMC	9	Unmodified	_SCECEGPMC_					0	0	0			REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF	REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7870178222656	2	479.642299	957.270045	-0.42804	-0.00020531	1.0126	0.00048568	0.58454	0.00028037	479.6427249710126	26.902	0.39556	26.902	26.724	27.12	0					46	28	2	0	0	0	0.26021	1	3450	3450		0	0	1	20385	+		18656	12449	12324	12447	25311	25311					-0.2102993168557532
SCECEGPMC	9	Unmodified	_SCECEGPMC_					0	0	0			REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF	REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.6427917480469	2	479.642299	957.270045	-0.36548	-0.0001753	1.0461	0.00050176	0.68062	0.00032646	479.64273499752653	26.687	0.3724	26.774	26.621	26.993	0.086699					40	28	2	0	0	0	0.35102	1	3189	3189		0	0	1	23677	+		18657	12449	12324	12447	25312	25312					-0.2102993168557532
SCECEGPMC	9	Unmodified	_SCECEGPMC_					0	0	0			REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF	REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2587890625	2	479.642299	957.270045	-0.36548	-0.0001753	1.0461	0.00050176	0.68062	0.00032646	479.64273499752653	26.687	0.3724	26.774	26.621	26.993	0.086699					40	28	2	0	0	0	0.26021	1	3167	3167		0	0	1	23677	+		18658	12449	12324	12447	25313	25313					-0.2102993168557532
SCETMLCPN	9	Unmodified	_SCETMLCPN_					0	0	0			REV__nc|ENSG00000137090|Q9Y5R6-2|DMRT1	REV__nc|ENSG00000137090|Q9Y5R6-2|DMRT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.1933288574219	2	499.193013	996.371474	0.12346	6.1629E-05	0.43329	0.0002163	0.55675	0.00027793	499.1932757590167	86.596	0.31648	86.596	86.467	86.784	0					16	11	2	0	0	0	0.33704	1	21469	21469		1.8442	0	1	184890	+		18659	9267	12325	12448	25314	25314					-0.12685736991363683
SCFAPRVPDR	10	Unmodified	_SCFAPRVPDR_					0	0	0		ENST00000505513.1_1_4:25146420-25156786:-|nuORF;nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS	ENST00000505513.1_1_4:25146420-25156786:-|nuORF	ENST00000505513.1_1_4:25146420-25156786:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2845458984375	2	574.287482	1146.56041	-0.066168	-3.7999E-05	-3.3465	-0.0019218	-3.4127	-0.0019598	574.2856442345764	109.91	0.083221	109.91	109.85	109.94	0					14	10	2	0	0	0	0.44727	2	28261	28261;28268		5.2969	0.066215	1	713240			18660	6887	12326	12449	25315;25316	25315					-0.007005803113770526
SCFAPRVPDR	10	Unmodified	_SCFAPRVPDR_					0	0	0		ENST00000505513.1_1_4:25146420-25156786:-|nuORF;nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS	ENST00000505513.1_1_4:25146420-25156786:-|nuORF	ENST00000505513.1_1_4:25146420-25156786:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.287482	1146.56041	0.2692	0.0001546	-3.9355	-0.0022601	-3.6663	-0.0021055	574.2852931766372	109.89	0.074905	109.91	109.87	109.95	0.017242	-9.6137E-06	-0.0003401	NaN	5.2969	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950930			18661	6887	12326	12449							-0.007005803113770526
SCFNDHEPF	9	Unmodified	_SCFNDHEPF_					0	0	0		ENSG00000166896|ENST00000300145|ATP23	ENSG00000166896|ENST00000300145|ATP23	ENSG00000166896|ENST00000300145|ATP23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2141723632812	2	548.213649	1094.41274	0.53077	0.00029098	0.64976	0.00035621	1.1805	0.00064718	548.2139432040206	79.411	0.39842	79.411	79.223	79.621	0					31	13	3	0	0	0	0.32112	1	19294	19294		3.9444	1.0552	1	216870			18662	4188	12327	12450	25317	25317					-0.13068516636030836
SCFNDHEPF	9	Unmodified	_SCFNDHEPF_					0	0	0		ENSG00000166896|ENST00000300145|ATP23	ENSG00000166896|ENST00000300145|ATP23	ENSG00000166896|ENST00000300145|ATP23	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	548.213649	1094.41274	0.53077	0.00029098	0.64976	0.00035621	1.1805	0.00064718	548.2139432040206	79.411	0.39842	79.411	79.223	79.621	0	-0.015578	-5.4032E-05	NaN	3.9444	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216870			18663	4188	12327	12450							-0.13068516636030836
SCLKCFPLVL	10	Unmodified	_SCLKCFPLVL_					0	0	0		ENST00000560975.5_1_15:63335715-63353895:+|nuORF	ENST00000560975.5_1_15:63335715-63353895:+|nuORF	ENST00000560975.5_1_15:63335715-63353895:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8187866210938	2	561.806131	1121.59771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.066	1	99.066	98.566	99.566	0								0	0	0	0.33762	1	25261	25261		2.9952	0	1				18664	7150	12328	12451	25318	25318					0.04177374910022991
SCLQLIRIHAE	11	Unmodified	_SCLQLIRIHAE_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8489379882812	2	641.850447	1281.68634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.35	1	104.35	103.85	104.85	0								0	0	0	0.33873	1	26847	26847		1.1933	0	1				18665	2636	12329	12452	25319	25319					0.05676506474037524
SCLTAILCIF	10	Unmodified	_SCLTAILCIF_					0	0	0		SLC25A33|p.F91Lfs*55|1|0.26|ENSG00000171612|chr1:9567316-9567316|T/-|frameshift_variant	SLC25A33|p.F91Lfs*55|1|0.26|ENSG00000171612|chr1:9567316-9567316|T/-|frameshift_variant	SLC25A33|p.F91Lfs*55|1|0.26|ENSG00000171612|chr1:9567316-9567316|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2826538085938	2	542.282489	1082.55042	0.31475	0.00017069	0.54941	0.00029793	0.86416	0.00046862	542.2825905979983	46.847	0.87071	46.847	46.686	47.557	0					58	32	3	0	0	0	0.41688	1	9327	9327		10.074	0	1	373130			18666	13366	12330	12453	25320	25320					0.012450956390011925
SCMKKGRKS	9	Unmodified	_SCMKKGRKS_					0	0	0			REV__nc|ENSG00000154767|Q01831-2|XPC	REV__nc|ENSG00000154767|Q01831-2|XPC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7743530273438	2	512.773154	1023.53175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.778	1	22.778	22.278	23.278	0								0	0	0	0.28631	1	2226	2226		1.8442	1.1539	1		+		18667	9716	12331	12454	25321	25321					0.020929787878571915
SCMTANKG	8	Unmodified	_SCMTANKG_					0	0	0			REV__ENST00000392717.6_1_2:165538375-165538423:-|nuORF	REV__ENST00000392717.6_1_2:165538375-165538423:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.1756896972656	2	406.175481	810.336409	0.66575	0.00027041	0.021028	8.541E-06	0.68678	0.00027895	406.17534869067634	88.24	1.3583	88.24	87.32	88.679	0					62	51	2	0	0	0	0.54097	1	21978	21978		0.69038	0	1	233110	+		18668	11695	12332	12455	25322	25322					-0.07634611737000796
SCQLHRLDEF	10	Unmodified	_SCQLHRLDEF_					0	0	0			REV__ENSG00000214414|ENST00000398290|TRIM77	REV__ENSG00000214414|ENST00000398290|TRIM77	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.53253173828125	3	416.532762	1246.57646	-0.063943	-2.6634E-05	0.31591	0.00013159	0.25197	0.00010495	416.53286408877386	42.828	1.9529	42.828	42.517	44.47	0					148	68	5	0	0	0	0.45632	1	8267	8267		3.5871	0.5148	1	379650	+		18669	11004	12333	12456	25323	25323					-0.036969188651255536
SCQRLQAQPLP	11	Unmodified	_SCQRLQAQPLP_					0	0	0		ENST00000609439.2_2_7:45847154-45848297:+|nuORF	ENST00000609439.2_2_7:45847154-45848297:+|nuORF	ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.828125	2	620.826972	1239.63939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.85	1	100.85	100.35	101.35	0								0	0	0	0.33281	1	25807	25807		3.2813	1.4371	1				18670	7322	12334	12457	25324	25324					0.02915646922929227
SCYYKKHAIF	10	Unmodified	_SCYYKKHAIF_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3189697265625	2	630.315709	1258.61686	0.14181	8.9384E-05	-0.95856	-0.00060419	-0.81675	-0.00051481	630.3150304798608	72.705	0.78059	72.761	72.538	73.319	0.055939					47	26	3	0	0	0	0.35104	1	17129	17129		17.113	0	1	264020	+		18671	10480	12335	12458	25325	25325					-0.0020995247473365453
SDCHLTEF	8	Unmodified	_SDCHLTEF_					0	0	0		tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1983642578125	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.771	1	17.855	17.355	18.355	0.083696								0	0	0	0.38822	1	915	915		0.69038	0.69038	1				18672	13680	12336	12459	25326	25326					-0.09679304039025283
SDEAQRVF	8	Unmodified	_SDEAQRVF_					0	0	0		nc|ENSG00000114013|P42081-2|CD86;nc|ENSG00000114013|P42081-5|CD86;nc|ENSG00000114013|P42081-6|CD86;nc|ENSG00000114013|P42081-4|CD86;nc|ENSG00000114013|P42081-3|CD86;ENSG00000114013|ENST00000330540|CD86	nc|ENSG00000114013|P42081-2|CD86	nc|ENSG00000114013|P42081-2|CD86	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.23028564453125	2	476.230156	950.445759	-0.16444	-7.831E-05	0.30265	0.00014413	0.13821	6.582E-05	476.23024507034023	34.961	1.2765	35.04	34.802	36.078	0.078827					111	49	4	0	0	0	0.50159	1	5715	5715		12.532	0	1	723400			18673	1823	12337	12460	25327	25327					-0.031445665216665475
SDELFRTQDF	10	Unmodified	_SDELFRTQDF_					0	0	0			REV__ENSG00000134548|ENST00000256969|SPX	REV__ENSG00000134548|ENST00000256969|SPX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.289794921875	2	629.290942	1256.56733	-0.12193	-7.6733E-05	-1.8318	-0.0011527	-1.9537	-0.0012294	629.2897611143072	34.545	0.28088	34.545	34.395	34.676	0					13	9	2	0	0	0	0.47199	1	5649	5649		0.35063	0	1	26222	+		18674	9181	12338	12461	25328	25328					-0.050689889498244156
SDEYRQRR	8	Unmodified	_SDEYRQRR_					0	0	0		ENSG00000153879|ENST00000284000|CEBPG	ENSG00000153879|ENST00000284000|CEBPG	ENSG00000153879|ENST00000284000|CEBPG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2737426757812	2	555.275961	1108.53737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.227	1	22.328	21.828	22.828	0.10178								0	0	0	0.38822	1	1967	1967		0.69038	0.16561	1				18675	3534	12339	12462	25329	25329					-0.012558831044771068
SDFCSRTSF	9	Unmodified	_SDFCSRTSF_					0	0	0			REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2201538085938	2	525.221474	1048.42839	-0.13852	-7.2755E-05	-0.74994	-0.00039389	-0.88847	-0.00046664	525.220907484963	32.176	0.53313	32.176	31.937	32.47	0					47	20	4	0	0	0	0.30757	1	4945	4945		5.7319	0.97584	1	30871	+		18676	11555	12340	12463	25330	25330					-0.09388230118997853
SDFCSRTSF	9	Unmodified	_SDFCSRTSF_					0	0	0			REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.22119140625	2	525.221474	1048.42839	-0.015403	-8.0901E-06	-0.20975	-0.00011017	-0.22515	-0.00011826	525.2211390066446	34.211	0.66351	34.211	33.958	34.621	0					45	25	2	0	0	0	0.30757	1	5568	5568		5.7319	0.97584	1	23433	+		18677	11555	12340	12463	25331	25331					-0.09388230118997853
SDFCSRTSF	9	Unmodified	_SDFCSRTSF_					0	0	0			REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	525.221474	1048.42839	-0.13852	-7.2755E-05	-0.74994	-0.00039389	-0.88847	-0.00046664	525.220907484963	32.176	0.53313	32.176	31.937	32.47	0	-0.0026455	-0.00061533	NaN	5.7319	47	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30871	+		18678	11555	12340	12463							-0.09388230118997853
SDFCSRTSF	9	Unmodified	_SDFCSRTSF_					0	0	0			REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.221474	1048.42839	-0.077117	-4.0504E-05	-0.46484	-0.00024415	-0.54196	-0.00028465	525.2210873458953	34.035	0.38252	34.111	33.925	34.307	0.076244	-0.049567	-0.00014829	NaN	5.7319	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14375	+		18679	11555	12340	12463							-0.09388230118997853
SDFCSRTSF	9	Unmodified	_SDFCSRTSF_					0	0	0			REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.221474	1048.42839	-0.1778	-9.3384E-05	0.25353	0.00013316	0.075728	3.9774E-05	525.221049842404	32.108	0.51073	32.181	31.879	32.39	0.07378	0.0026455	0.00043876	NaN	5.7319	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26024	+		18680	11555	12340	12463							-0.09388230118997853
SDIFPTHI	8	Unmodified	_SDIFPTHI_					0	0	0		ENST00000475019.1_1_3:145914331-145918851:-|nuORF	ENST00000475019.1_1_3:145914331-145918851:-|nuORF	ENST00000475019.1_1_3:145914331-145918851:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.2397155761719	2	465.239993	928.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.92	1	50.99	50.49	51.49	0.069874								0	0	0	0.38822	1	10459	10459		8.5933	0	1				18681	6707	12341	12464	25332	25332					-0.0016619051090174253
SDIVGVAF	8	Unmodified	_SDIVGVAF_					0	0	0		ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2160339355469	2	404.215986	806.417419	0.6194	0.00025037	-0.51	-0.00020615	0.10939	4.4218E-05	404.21564561134835	60.81	0.54885	60.81	60.669	61.218	0					34	19	3	0	0	0	0.39998	1	13612	13612		26.341	6.9023	1	184930			18682	1155	12342	12465	25333	25333					0.006467355690460863
SDIVGVAF	8	Unmodified	_SDIVGVAF_					0	0	0		ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.21539306640625	2	404.215986	806.417419	0.036886	1.491E-05	-0.086893	-3.5123E-05	-0.050006	-2.0213E-05	404.2158350756397	60.732	0.61134	60.805	60.657	61.268	0.073418					29	20	2	0	0	0	0.3576	1	13441	13441		8.5933	3.3626	1	153340			18683	1155	12342	12465	25334	25334					0.006467355690460863
SDLEKHFTQ	9	Unmodified	_SDLEKHFTQ_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7716674804688	2	552.769645	1103.52474	0.15391	8.5075E-05	-0.14109	-7.799E-05	0.012817	7.0848E-06	552.7695049300888	43.403	1.3871	43.492	42.859	44.246	0.088924					183	50	4	0	0	0	0.33849	1	8034	8034		1.6526	0	1	454800			18684	542	12343	12466	25335	25335					-0.022883392873836783
SDLTSVGELTW	11	Unmodified	_SDLTSVGELTW_					0	0	0		ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7682495117188	2	604.295693	1206.57683	0.53975	0.00032617	-4.0834	-0.0024676	-3.5436	-0.0021414	604.2923201146039	68.961	0.42902	69.023	68.739	69.168	0.062119					30	13	3	0	0	0	0.30965	1	15936	15936		12.241	1.4167	1	226910			18685	6225	12344	12467	25336	25336					-0.018192206642879682
SDLVNLESV	9	Unmodified	_SDLVNLESV_					0	0	0			REV__ENSG00000212916|ENST00000418460|MAP10	REV__ENSG00000212916|ENST00000418460|MAP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2533874511719	2	488.253297	974.492041	0.3047	0.00014877	-0.01467	-7.1627E-06	0.29003	0.00014161	488.25321196683905	64.198	0.79517	64.269	63.999	64.794	0.071022					72	28	4	0	0	0	0.047633	1	14545	14545		43.858	2.0187	1	915160	+		18686	10990	12345	12468	25337	25337					0.0037745358977190335
SDLWVDGGR	9	Unmodified	_SDLWVDGGR_					0	0	0			REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.7742614746094	2	502.743431	1003.47231	0.145	7.29E-05	4.2508	0.0021371	4.3958	0.00221	502.74555281137276	48.855	0.1469	48.855	48.77	48.917	0					6	4	2	0	0	0	0.25746	1	9956	9956		3.2813	0.28607	1	45927	+		18687	8490	12346	12469	25338	25338					-0.029288776303246777
SDQFDLESI	9	Unmodified	_SDQFDLESI_					0	0	0			REV__ENST00000469896.1_1_3:149468461-149470237:-|nuORF	REV__ENST00000469896.1_1_3:149468461-149470237:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2406616210938	2	527.240386	1052.46622	0.51406	0.00027103	-0.46063	-0.00024286	0.053434	2.8173E-05	527.2400100372902	55.217	0.43754	55.217	55.059	55.497	0					27	15	2	0	0	0	0.24021	1	11914	11914		13.906	3.8321	1	134060	+		18688	8766	12347	12470	25339	25339					-0.05791440652524216
SDQFDLESI	9	Unmodified	_SDQFDLESI_					0	0	0			REV__ENST00000469896.1_1_3:149468461-149470237:-|nuORF	REV__ENST00000469896.1_1_3:149468461-149470237:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.240386	1052.46622	0.51406	0.00027103	-0.46063	-0.00024286	0.053434	2.8173E-05	527.2400100372902	55.217	0.43754	55.217	55.059	55.497	0	-0.013315	8.5825E-05	NaN	13.906	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134060	+		18689	8766	12347	12470							-0.05791440652524216
SDQVYRQR	8	Unmodified	_SDQVYRQR_					0	0	0		ENST00000381168.7_1_11:2187868-2190906:-|nuORF;ENST00000469226.1_1_11:2189094-2189913:-|nuORF;nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH	ENST00000381168.7_1_11:2187868-2190906:-|nuORF	ENST00000381168.7_1_11:2187868-2190906:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7789916992188	2	526.267604	1050.52066	-0.23767	-0.00012508	-0.52135	-0.00027437	-0.75902	-0.00039945	526.2674630828998	24.839	0.41715	24.839	24.662	25.08	0					37	29	2	0	0	0	0.53494	1	2820	2820		4.756	0	1	28346			18690	6293	12348	12471	25340	25340					-0.0025838399044459948
SDQVYRQR	8	Unmodified	_SDQVYRQR_					0	0	0		ENST00000381168.7_1_11:2187868-2190906:-|nuORF;ENST00000469226.1_1_11:2189094-2189913:-|nuORF;nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH	ENST00000381168.7_1_11:2187868-2190906:-|nuORF	ENST00000381168.7_1_11:2187868-2190906:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7783813476562	2	526.267604	1050.52066	-0.13354	-7.0277E-05	-0.10142	-5.3376E-05	-0.23496	-0.00012365	526.267685933998	24.737	0.35828	24.833	24.66	25.018	0.096073					36	29	2	0	0	0	0.53858	1	2660	2660		2.3027	0.82083	1	25469			18691	6293	12348	12471	25341	25341					-0.0025838399044459948
SDREKKVK	8	Unmodified	_SDREKKVK_					0	0	0			REV__nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2	REV__nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.78936767578125	2	495.290548	988.566543	0.62302	0.00030858	0.32982	0.00016335	0.95283	0.00047193	495.2906932245038	87.842	0.76437	87.842	87.32	88.085	0					45	27	3	0	0	0	0.3576	1	21860	21860		1.8442	0	1	792640	+		18692	10149	12349	12472	25342	25342					0.07180261191808768
SDRQEEVF	8	Unmodified	_SDRQEEVF_					0	0	0			REV__CON__P09870	REV__CON__P09870	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.23150634765625	2	505.232896	1008.45124	0.28618	0.00014459	-2.2602	-0.0011419	-1.974	-0.00099734	505.2316142897013	96.195	0.22054	96.235	96.072	96.293	0.039772					18	10	3	0	0	0	0.53557	1	24228	24228		4.3292	0.73274	1	64418	+	+	18693	7838	12350	12473	25343	25343					-0.052648877298452135
SDRYGTKEEV	10	Unmodified	_SDRYGTKEEV_					0	0	0			REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.310546875	2	592.283117	1182.55168	0.16026	9.4918E-05	4.1486	0.0024572	4.3089	0.0025521	592.2850356113663	89.865	0.1632	89.899	89.796	89.959	0.034065					9	5	2	0	0	0	0.31565	1	22307	22307		8.1555	0	1	78568	+		18694	11832	12351	12474	25344	25344					-0.03229275466856052
SDSAGDIDDLL	11	Unmodified	_SDSAGDIDDLL_					0	0	0			REV__ENST00000418777.5_1_9:16418989-16435690:-|nuORF	REV__ENST00000418777.5_1_9:16418989-16435690:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7533569335938	2	560.753858	1119.49316	0.48104	0.00026975	-1.7233	-0.00096635	-1.2423	-0.0006966	560.7528041658917	55.766	0.73617	55.766	55.38	56.116	0					39	25	2	0	0	0	0.38057	1	12115	12115		8.7454	0.58988	1	205860	+		18695	10308	12352	12475	25345	25345					-0.061803768319805386
SDSILRQRE	9	Unmodified	_SDSILRQRE_					0	0	0			REV__ZC3H13|p.E1360Q|1|0.93|ENSG00000123200|chr13:45967747-45967747|C/G|missense_variant	REV__ZC3H13|p.E1360Q|1|0.93|ENSG00000123200|chr13:45967747-45967747|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.305908203125	2	552.293819	1102.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.36	1	104.4	103.9	104.9	0.034004								0	0	0	0.28527	1	26679	26679		2.0598	0	1		+		18696	13338	12353	12476	25346	25346					0.025901543525151283
SDSYPRRKE	9	Unmodified	_SDSYPRRKE_					0	0	0			REV__ENST00000602040.5_1_19:50354666-50357992:+|nuORF	REV__ENST00000602040.5_1_19:50354666-50357992:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2871704101562	2	569.285994	1136.55744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.448	1	26.448	25.948	26.948	0								0	0	0	0.28527	1	3262	3262		2.0598	0.40713	1		+		18697	8522	12354	12477	25347	25347					-0.005381321645245407
SDVSHDKK	8	Unmodified	_SDVSHDKK_					0	0	0			REV__nc|ENSG00000099290|Q641Q2-2|WASHC2A	REV__nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.71429443359375	2	458.230156	914.445759	-0.035863	-1.6433E-05	0.49172	0.00022532	0.45586	0.00020889	458.23037675252647	28.063	0.19737	28.063	27.968	28.165	0					17	10	3	0	0	0	0.3576	1	3757	3757		3.9444	1.3669	1	16209	+		18698	8355	12355	12478	25348	25348					-0.0148856652166387
SDYDSSSSKG	10	Unmodified	_SDYDSSSSKG_					0	0	0		ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.709716796875	2	516.709451	1031.40435	-0.098028	-5.0652E-05	0.065209	3.3694E-05	-0.032819	-1.6958E-05	516.7094260443245	27.627	0.97115	27.627	27.407	28.378	0					185	67	4	0	0	0	0.46746	1	3725	3725		1.4819	0	1	920350			18699	1716	12356	12479	25349	25349					-0.11009792071649827
SDYKLGWEI	9	Unmodified	_SDYKLGWEI_					0	0	0		ENSG00000139797|ENST00000267291|RNF113B	ENSG00000139797|ENST00000267291|RNF113B	ENSG00000139797|ENST00000267291|RNF113B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2784423828125	2	555.776939	1109.53933	0.59529	0.00033085	-2.1692	-0.0012056	-1.5739	-0.00087475	556.2778177869372	100.07	0.91073	100.07	99.807	100.72	0					149	51	4	0	0	0	0.11547	1	25556	25556		29.082	3.6823	1	557760			18700	2987	12357	12480	25350	25350					-0.01106267139243755
SEAAYKEAF	9	Unmodified	_SEAAYKEAF_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.23974609375	2	508.24019	1014.46583	0.26743	0.00013592	-0.57987	-0.00029472	-0.31245	-0.0001588	508.2397512839494	37.537	0.39307	37.621	37.445	37.838	0.084476					24	12	3	0	0	0	0.26104	1	6443	6443		11.495	3.8858	1	51093			18701	2388	12358	12481	25351	25351					-0.04082815581716659
SEAAYKEAF	9	Unmodified	_SEAAYKEAF_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	508.24019	1014.46583	0.24262	0.00012331	-0.79083	-0.00040193	-0.5482	-0.00027862	508.23953959750617	37.613	0.36844	37.613	37.469	37.837	0	-0.0042311	-8.9965E-05	NaN	11.495	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41891			18702	2388	12358	12481							-0.04082815581716659
SEAEALSEI	9	Unmodified	_SEAEALSEI_					0	0	0		nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2710876464844	2	474.729655	947.444756	-0.030663	-1.4557E-05	-0.095323	-4.5252E-05	-0.12599	-5.9809E-05	474.72946031708807	56.451	0.37891	56.451	56.271	56.65	0					19	13	2	0	0	0	0.21603	1	12272	12272		20.454	0	1	87188			18703	2063	12359	12482	25352	25352					-0.031068256812432082
SEAEALSEI	9	Unmodified	_SEAEALSEI_					0	0	0		nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	474.729655	947.444756	-0.09029	-4.2863E-05	-0.28098	-0.00013339	-0.37127	-0.00017625	474.7294267849881	56.426	0.2159	56.492	56.306	56.522	0.066448	0.020759	-8.2742E-05	NaN	20.454	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121020			18704	2063	12359	12482							-0.031068256812432082
SEAEHQRAY	9	Unmodified	_SEAEHQRAY_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7487182617188	2	545.749244	1089.48394	-0.37363	-0.00020391	-0.089867	-4.9045E-05	-0.46349	-0.00025295	545.7491646271869	16.435	0.23055	16.435	16.331	16.562	0					62	29	3	0	0	0	0.32375	2	720	720;742		3.5965	1.2938	1	47801			18705	5482	12360	12483	25353;25354	25353					-0.05722680607004804
SEAEQTLRF	9	Unmodified	_SEAEQTLRF_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7689819335938	2	540.769645	1079.52474	-0.14843	-8.0266E-05	-0.94828	-0.0005128	-1.0967	-0.00059307	540.7694030027704	44.81	0.39172	44.81	44.632	45.024	0					20	13	2	0	0	0	0.11816	1	8744	8744		28.495	11.552	1	48478			18706	2371	12361	12484	25355	25355					-0.011843392873743142
SEAEQTLRF	9	Unmodified	_SEAEQTLRF_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7954711914062	2	540.769645	1079.52474	0.15275	8.26E-05	-0.75429	-0.0004079	-0.60154	-0.0003253	540.7694695016123	44.71	0.30709	44.797	44.681	44.988	0.08754					16	11	2	0	0	0	0.2125	1	8606	8606		17.113	1.8644	1	56324			18707	2371	12361	12484	25356	25356					-0.011843392873743142
SEALALTQTW	10	Unmodified	_SEALALTQTW_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2872924804688	2	560.287671	1118.56079	0.26428	0.00014807	-0.91638	-0.00051343	-0.6521	-0.00036536	560.2869949134006	71.79	0.38798	71.79	71.584	71.972	0					33	13	3	0	0	0	0.12844	1	16959	16959		41.956	20.419	1	317040			18708	5482	12362	12485	25357	25357					0.0062511788946721936
SEALALTQTW	10	Unmodified	_SEALALTQTW_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2874145507812	2	560.287671	1118.56079	0.308	0.00017257	-0.65162	-0.00036509	-0.34361	-0.00019252	560.2872418677364	71.733	0.41391	71.79	71.567	71.981	0.056793					36	14	4	0	0	0	0.15743	2	16780	16780;16787		38.615	17.025	1	333690			18709	5482	12362	12485	25358;25359	25358					0.0062511788946721936
SEALSALAL	9	Unmodified	_SEALSALAL_					0	0	0			REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10	REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.54608154296875	2	437.74765	873.480748	0.12984	5.6837E-05	-0.25398	-0.00011118	-0.12414	-5.4341E-05	437.7475184376414	36.947	0.5892	37.028	36.853	37.443	0.081715					36	22	2	0	0	0	0.25644	1	6229	6229		3.9444	0	1	85140	+		18710	9942	12363	12486	25360	25360					0.038946762862565265
SEALSALAL	9	Unmodified	_SEALSALAL_					0	0	0			REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10	REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	437.74765	873.480748	0.39329	0.00017216	-0.63223	-0.00027676	-0.23893	-0.00010459	437.74733509426784	37.078	0.47548	37.078	36.889	37.364	0	0.024703	-0.00015074	NaN	3.9444	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90327	+		18711	9942	12363	12486							0.038946762862565265
SEAQIRQM	8	Unmodified	_SEAQIRQM_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.25897216796875	2	481.739834	961.465115	-0.38606	-0.00018598	-2.5734	-0.0012397	-2.9595	-0.0014257	481.73851370591683	27.497	0.24449	27.584	27.543	27.787	0.0867					29	18	2	0	0	0	0.3576	1	3457	3457		7.9102	0	1	42223	+		18712	12814	12364	12487	25361	25361					-0.017159335024075517
SEAQPYRSL	9	Unmodified	_SEAQPYRSL_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7515869140625	2	525.764363	1049.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.637	1	26.637	26.137	27.137	0								0	0	0	0.27427	1	3315	3315		4.3292	0.38484	1				18713	3097	12365	12488	25362	25362					-0.008603219418091612
SECGYVEM	8	Unmodified	_SECGYVEM_					0	0	0		ENST00000515622.1_1_5:126783361-126801299:+|nuORF;ENSG00000145794|ENST00000503335|MEGF10	ENST00000515622.1_1_5:126783361-126801299:+|nuORF	ENST00000515622.1_1_5:126783361-126801299:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1719970703125	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.185	1	44.185	43.685	44.685	0								0	0	0	0.38822	1	8557	8557		2.5775	0	1				18714	3264	12366	12489	25363	25363					-0.13085755039321612
SEDIELGHNTS	11	Unmodified	_SEDIELGHNTS_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2691650390625	2	601.270207	1200.52586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.561	1	45.646	45.146	46.146	0.085617								0	0	0	0.33908	1	8843	8843		1.0715	0.38109	1		+		18715	8240	12367	12490	25364	25364					-0.06638169709140129
SEDSGRARGIR	11	Unmodified	_SEDSGRARGIR_					0	0	0		KHDRBS2|p.G187A|1|0.14|ENSG00000112232|chr6:61901295-61901295|C/G|missense_variant	KHDRBS2|p.G187A|1|0.14|ENSG00000112232|chr6:61901295-61901295|C/G|missense_variant	KHDRBS2|p.G187A|1|0.14|ENSG00000112232|chr6:61901295-61901295|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8780212402344	3	401.877808	1202.6116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.76	1	27.76	27.26	28.26	0								0	0	0	0.33436	1	3640	3640		1.1098	0.096179	1				18716	7370	12368	12491	25365	25365					0.01839459987036207
SEEAEIIRKY	10	Unmodified	_SEEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.8267822265625	2	619.324785	1236.63502	-0.091403	-5.6608E-05	0.28074	0.00017387	0.18934	0.00011726	619.3246888721727	36.957	0.24345	37.039	36.967	37.211	0.081715					11	8	2	0	0	0	0.46827	1	6256	6256		1.3295	0.80477	1	24364			18717	3183	12369	12492	25366	25366					0.02616460981016644
SEEATEEPD	9	Unmodified	_SEEATEEPD_					0	0	0		ENSG00000242362|ENST00000458218|CT47A2;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000224089|ENST00000430448|CT47A10	ENSG00000242362|ENST00000458218|CT47A2	ENSG00000242362|ENST00000458218|CT47A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2616271972656	2	503.696009	1005.37746	0.073749	3.7147E-05	-1.1552	-0.00058189	-1.0815	-0.00054475	503.69537696285204	35.768	0.35448	35.768	35.589	35.944	0					23	13	2	0	0	0	0.25875	1	5997	5997		1.8442	0	1	46032			18718	5603	12370	12493	25367	25367					-0.1250090068284635
SEEATEEPD	9	Unmodified	_SEEATEEPD_					0	0	0		ENSG00000242362|ENST00000458218|CT47A2;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000224089|ENST00000430448|CT47A10	ENSG00000242362|ENST00000458218|CT47A2	ENSG00000242362|ENST00000458218|CT47A2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	503.696009	1005.37746	0.12201	6.1458E-05	-1.3688	-0.00068944	-1.2467	-0.00062798	503.6951975461823	35.658	0.35106	35.737	35.569	35.92	0.078831	-0.015369	-0.00013766	NaN	1.8442	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55844			18719	5603	12370	12493							-0.1250090068284635
SEEDLKVLF	9	Unmodified	_SEEDLKVLF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.80615234375	2	540.284597	1078.55464	0.57591	0.00031116	0.28931	0.00015631	0.86522	0.00046747	540.2847031001545	64.365	0.46732	64.365	64.165	64.632	0					38	15	3	0	0	0	0.16724	1	14724	14724		33.445	13.03	1	257020			18720	428	12371	12494	25368	25368					0.018505996579506245
SEEDLKVLF	9	Unmodified	_SEEDLKVLF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8062133789062	2	540.284597	1078.55464	0.57419	0.00031022	0.32322	0.00017463	0.8974	0.00048485	540.2847444437377	64.249	0.46664	64.32	64.143	64.61	0.071014					36	16	3	0	0	0	0.16724	1	14491	14491		27.223	14.181	1	359110			18721	428	12371	12494	25369	25369					0.018505996579506245
SEEGLLRLY	9	Unmodified	_SEEGLLRLY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2484130859375	2	540.290214	1078.56587	0.39888	0.00021551	-0.67447	-0.00036441	-0.27559	-0.0001489	540.2900985213719	61.282	0.36102	61.355	61.053	61.414	0.073418					16	11	2	0	0	0	0.19558	1	13592	13592		20.415	6.9067	1	82641			18722	856	12372	12495	25370	25370					0.029734217520854145
SEEGLLRLY	9	Unmodified	_SEEGLLRLY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	540.290214	1078.56587	0.40103	0.00021667	-0.17662	-9.5425E-05	0.22441	0.00012125	540.2900856110051	61.284	0.41583	61.284	61.032	61.447	0	-0.035634	0.00021647	NaN	20.415	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75562			18723	856	12372	12495							0.029734217520854145
SEELKNIHDS	10	Unmodified	_SEELKNIHDS_					0	0	0		nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2822265625	2	586.283117	1170.55168	0.48753	0.00028583	-1.9209	-0.0011262	-1.4333	-0.00084034	586.2818067484504	102.63	0.38215	102.63	102.4	102.79	0					31	26	2	0	0	0	0.44938	1	26348	26348		4.897	0.36815	1	79405			18724	7448	12373	12496	25371	25371					-0.026772754668627385
SEELKNIHDS	10	Unmodified	_SEELKNIHDS_					0	0	0		nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2821044921875	2	586.283117	1170.55168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.56	1	102.6	102.1	103.1	0.040916								0	0	0	0.33599	1	26160	26160		4.897	1.3005	1				18725	7448	12373	12496	25372	25372					-0.026772754668627385
SEEMGKMLK	9	Unmodified	_SEEMGKMLK_					0	0	0		ENST00000260506.12_1_1:94017954-94018146:+|nuORF	ENST00000260506.12_1_1:94017954-94018146:+|nuORF	ENST00000260506.12_1_1:94017954-94018146:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.1851806640625	2	526.759378	1051.5042	-0.031923	-1.6815E-05	0.082075	4.3234E-05	0.050152	2.6418E-05	526.7594355313676	22.174	0.17592	22.276	22.166	22.342	0.10178					15	12	2	0	0	0	0.25989	1	1929	1929		0.52476	0	1	13724			18726	5860	12374	12497	25373	25373					-0.019489692630486388
SEEYLERQ	8	Unmodified	_SEEYLERQ_					0	0	0		ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	ENSG00000102387|ENST00000356784|TAF7L	ENSG00000102387|ENST00000356784|TAF7L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7239379882812	2	527.246003	1052.47745	-0.15892	-8.3788E-05	0.027016	1.4244E-05	-0.1319	-6.9544E-05	527.2461315889865	28.519	0.24188	28.519	28.405	28.647	0					14	9	2	0	0	0	0.3576	1	3893	3893		2.0598	0	1	16972			18727	1313	12375	12498	25374	25374					-0.046686185583666884
SEFALQTLL	9	Unmodified	_SEFALQTLL_					0	0	0		nc|ENSG00000145604|Q13309-4|SKP2;nc|ENSG00000145604|Q13309-2|SKP2;ENSG00000145604|ENST00000274255|SKP2	nc|ENSG00000145604|Q13309-4|SKP2	nc|ENSG00000145604|Q13309-4|SKP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2815246582031	2	511.281857	1020.54916	0.6462	0.00033039	-2.4121	-0.0012333	-1.7659	-0.00090287	511.2813957199797	83.941	0.43324	83.941	83.749	84.182	0					44	14	4	0	0	0	0.23908	1	20676	20676		16.149	0	1	244270			18728	3253	12376	12499	25375	25375					0.03970920866152028
SEFALQTLL	9	Unmodified	_SEFALQTLL_					0	0	0		nc|ENSG00000145604|Q13309-4|SKP2;nc|ENSG00000145604|Q13309-2|SKP2;ENSG00000145604|ENST00000274255|SKP2	nc|ENSG00000145604|Q13309-4|SKP2	nc|ENSG00000145604|Q13309-4|SKP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2814025878906	2	511.281857	1020.54916	0.32924	0.00016833	-0.09422	-4.8173E-05	0.23502	0.00012016	511.2817622670846	83.911	0.46219	83.933	83.779	84.241	0.021744					26	16	2	0	0	0	0.1231	1	20510	20510		41.956	0	1	251750			18729	3253	12376	12499	25376	25376					0.03970920866152028
SEFFKTYIC	9	Carbamidomethyl (C)	_SEFFKTYIC(Carbamidomethyl (C))_	SEFFKTYIC(1)		SEFFKTYIC(72)		0	1	0		ENSG00000125741|ENST00000263275|OPA3;nc|ENSG00000125741|Q9H6K4-2|OPA3;OPA3-EML2|1|fusion	ENSG00000125741|ENST00000263275|OPA3	ENSG00000125741|ENST00000263275|OPA3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7767333984375	2	597.778625	1193.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.23	1	104.23	103.73	104.73	0								0	0	0	0.0056319	1	26815	26815		71.922	21.989	1				18730	2308	12377	12500	25377	25377	5				-0.04633340356872395
SEFLKKSTF	9	Unmodified	_SEFLKKSTF_					0	0	0		ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7830810546875	2	543.795132	1085.57571	0.35935	0.00019541	0.1564	8.5048E-05	0.51574	0.00028046	543.7950815216668	46.91	0.28894	46.993	46.91	47.199	0.083092					16	10	2	0	0	0	0.20367	1	9295	9295		18.135	2.2878	1	48037			18731	365	12378	12501	25378	25378					0.036346097574551095
SEFLKKSTF	9	Unmodified	_SEFLKKSTF_					0	0	0		ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.78271484375	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.202	1	47.285	46.785	47.785	0.083096								0	0	0	0.16627	1	9336	9336		23.148	8.3102	1				18732	365	12378	12501	25379	25379					0.036346097574551095
SEGDITQKGY	10	Unmodified	_SEGDITQKGY_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;ENSG00000151240|ENST00000280886|DIP2C;DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.259521484375	2	549.259111	1096.50367	-0.06118	-3.3604E-05	0.15256	8.3794E-05	0.091378	5.019E-05	549.2593403823455	30.011	0.32968	30.011	29.866	30.196	0					32	13	3	0	0	0	0.3186	1	4306	4306		20.581	14.375	1	33974			18733	694;3453	12379	12502	25380	25380					-0.04072349386888163
SEGDITQKGY	10	Unmodified	_SEGDITQKGY_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;ENSG00000151240|ENST00000280886|DIP2C;DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2592163085938	2	549.259111	1096.50367	0.0014444	7.9333E-07	0.235	0.00012908	0.23644	0.00012987	549.2594084034057	29.979	0.3383	30.054	29.905	30.243	0.075403					42	20	3	0	0	0	0.46208	1	4195	4195		2.4985	0.84587	1	32224			18734	694;3453	12379	12502	25381	25381					-0.04072349386888163
SEGELVVKF	9	Unmodified	_SEGELVVKF_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2732849121094	2	504.274032	1006.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.871	1	55.871	55.371	56.371	0								0	0	0	0.078437	1	12102	12102		39.95	15.929	1				18735	4314	12380	12503	25382	25382					0.03050634349096981
SEGELVVKF	9	Unmodified	_SEGELVVKF_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2738952636719	2	504.274032	1006.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.806	1	55.871	55.371	56.371	0.065128								0	0	0	0.053425	1	11946	11946		47.749	18.667	1				18736	4314	12380	12503	25383	25383					0.03050634349096981
SEGGTVKNY	9	Unmodified	_SEGGTVKNY_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.72998046875	2	477.729989	953.445425	-0.55287	-0.00026412	-0.15912	-7.6016E-05	-0.71199	-0.00034014	477.72987390055073	21.172	0.33549	21.172	21.029	21.365	0					55	37	2	0	0	0	0.2418	1	1792	1792		13.906	1.3745	1	28858			18737	2534	12381	12504	25384	25384					-0.033159862415232055
SEGGTVKNY	9	Unmodified	_SEGGTVKNY_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	477.729989	953.445425	-0.19228	-9.186E-05	-0.47164	-0.00022532	-0.66393	-0.00031718	477.7297010929403	20.992	0.24763	21.092	20.965	21.213	0.099499	-0.040044	-0.00018451	NaN	13.906	49	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29944			18738	2534	12381	12504							-0.033159862415232055
SEHTRDYRRG	10	Unmodified	_SEHTRDYRRG_					0	0	0		nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1	nc|ENSG00000174373|Q6GYQ0|RALGAPA1	nc|ENSG00000174373|Q6GYQ0|RALGAPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.8099365234375	2	638.810699	1275.60684	-0.26383	-0.00016854	-0.017791	-1.1365E-05	-0.28162	-0.0001799	639.3125633053545	26.492	0.10304	26.492	26.455	26.559	0					8	5	2	0	0	0	0.4753	1	3286	3286		0	0	1	8229.2			18739	4580	12382	12505	25385	25385					-0.019934241557621135
SEIEAKVRY	9	Unmodified	_SEIEAKVRY_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7960205078125	2	547.795663	1093.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.287	1	32.287	31.787	32.787	0								0	0	0	0.27782	1	4976	4976		3.5965	1.2938	1				18740	2831	12383	12506	25386	25386					0.03372824126381602
SEIELFRVF	9	Unmodified	_SEIELFRVF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.3082275390625	2	570.308406	1138.60226	0.23446	0.00013372	-0.4205	-0.00023981	-0.18603	-0.0001061	570.3080325293653	78.256	0.58524	78.256	78.013	78.599	0					35	19	3	0	0	0	0.023873	2	18954	18954;19020		55.503	35.049	1	746710			18741	3192	12384	12507	25387;25388	25387					0.03850298648808348
SEIELFRVF	9	Unmodified	_SEIELFRVF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.3086547851562	2	570.308406	1138.60226	0.43294	0.00024691	0.028756	1.64E-05	0.4617	0.00026331	570.3084993827425	78.22	0.86595	78.25	77.818	78.684	0.030159					41	29	2	0	0	0	0.023873	1	18806	18806		55.503	38.39	1	747230			18742	3192	12384	12507	25389	25389					0.03850298648808348
SEIFHSQSF	9	Unmodified	_SEIFHSQSF_					0	0	0		ENST00000517342.1_1_8:57389388-57389772:-|nuORF;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	ENST00000517342.1_1_8:57389388-57389772:-|nuORF	ENST00000517342.1_1_8:57389388-57389772:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2510986328125	2	541.251089	1080.48762	0.44759	0.00024226	1.4297	0.00077384	1.8773	0.0010161	541.2518431447829	47.368	0.89941	47.368	47.17	48.07	0					52	30	2	0	0	0	0.015341	1	9537	9537		61.602	25.096	1	164730			18743	5085	12385	12508	25390	25390					-0.04940010833138331
SEIRYRKQPW	10	Unmodified	_SEIRYRKQPW_					0	0	0		ENST00000598118.1_1_19:35506495-35517042:+|nuORF;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A	ENST00000598118.1_1_19:35506495-35517042:+|nuORF	ENST00000598118.1_1_19:35506495-35517042:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9135437011719	3	454.914083	1361.72042	0.19479	8.8611E-05	-0.099794	-4.5398E-05	0.094993	4.3214E-05	455.2483591670988	52.429	1.0813	52.496	51.829	52.911	0.067173					86	41	5	0	0	0	0.45632	1	10890	10890		3.5871	0.23133	1	383160			18744	1033	12386	12509	25391	25391					0.0540267095730087
SEKRFGLE	8	Unmodified	_SEKRFGLE_					0	0	0		OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000197444|Q9ULD0-3|OGDHL;nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENST00000497326.1_1_7:44706423-44714208:+|nuORF;OGDH|p.N359Ifs*26|1|0.27|ENSG00000105953|chr7:44676018-44676018|A/-|frameshift_variant;nc|ENSG00000105953|Q02218-3|OGDH;ENSG00000197444|ENST00000374103|OGDHL	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;ENSG00000197444|ENST00000374103|OGDHL	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7478332519531	2	483.256174	964.497795	-0.20474	-9.8942E-05	0.091072	4.4011E-05	-0.11367	-5.4931E-05	483.2563496202058	39.307	1.3023	39.307	38.82	40.123	0					65	47	3	0	0	0	0.3576	1	6953	6953		2.3027	0	1	69511			18745	1494;5298	12387	12510	25392	25392					0.014125968921121057
SEKRFGLE	8	Unmodified	_SEKRFGLE_					0	0	0		OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000197444|Q9ULD0-3|OGDHL;nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENST00000497326.1_1_7:44706423-44714208:+|nuORF;OGDH|p.N359Ifs*26|1|0.27|ENSG00000105953|chr7:44676018-44676018|A/-|frameshift_variant;nc|ENSG00000105953|Q02218-3|OGDH;ENSG00000197444|ENST00000374103|OGDHL	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;ENSG00000197444|ENST00000374103|OGDHL	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	483.256174	964.497795	-0.082539	-3.9887E-05	-0.26164	-0.00012644	-0.34418	-0.00016633	483.25619906661683	39.236	0.40825	39.325	39.105	39.513	0.088566	0.0090175	-0.0002283	NaN	2.3027	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54016			18746	1494;5298	12387	12510							0.014125968921121057
SELAQNHEF	9	Unmodified	_SELAQNHEF_					0	0	0		nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000137166|Q8IVH2-2|FOXP4;ENSG00000137166|ENST00000307972|FOXP4	nc|ENSG00000137166|Q8IVH2-3|FOXP4	nc|ENSG00000137166|Q8IVH2-3|FOXP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2582397460938	2	537.74617	1073.47779	0.42638	0.00022928	-1.7181	-0.00092389	-1.2917	-0.00069461	537.7451872952846	91.125	0.4845	91.125	90.973	91.458	0					42	16	4	0	0	0	0.25162	1	22833	22833		8.1555	1.8014	1	393890			18747	2834	12388	12511	25393	25393					-0.05601198838508026
SELEKQKGV	9	Unmodified	_SELEKQKGV_					0	0	0		ENSG00000144711|ENST00000613206|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;nc|ENSG00000144711|Q6DN90-2|IQSEC1	ENSG00000144711|ENST00000613206|IQSEC1	ENSG00000144711|ENST00000613206|IQSEC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2821350097656	2	509.282389	1016.55022	-0.30269	-0.00015416	-0.049338	-2.5127E-05	-0.35203	-0.00017928	509.28225908745935	22.093	0.82532	22.093	21.927	22.753	0					173	69	4	0	0	0	0.33849	1	2114	2114		1.6526	0	1	290470			18748	3223	12389	12512	25394	25394					0.04261135235049096
SELFGKFLFI	10	Unmodified	_SELFGKFLFI_					0	0	0		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.81884765625	2	600.8368	1199.65905	0.46023	0.00027653	-1.2868	-0.00077313	-0.82652	-0.0004966	600.835947922553	100.85	0.63982	100.85	100.41	101.05	0					62	36	2	0	0	0	0.45627	1	25821	25821		3.5965	0.31518	1	94209			18749	3144	12390	12513	25395	25395					0.06720346205315764
SELFGKFLFI	10	Unmodified	_SELFGKFLFI_					0	0	0		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8184814453125	2	600.8368	1199.65905	0.53759	0.00032301	-1.0644	-0.00063952	-0.52678	-0.00031651	600.8359837670503	100.7	0.53796	100.74	100.55	101.09	0.042839					46	33	2	0	0	0	0.45627	1	25584	25584		3.5965	0.31518	1	80020			18750	3144	12390	12513	25396	25396					0.06720346205315764
SELIKIQAF	9	Unmodified	_SELIKIQAF_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8052978515625	2	524.8055	1047.59645	0.15053	7.9001E-05	0.28808	0.00015118	0.43861	0.00023019	524.8055503181903	58.036	0.756	58.104	57.869	58.625	0.068371					58	27	4	0	0	0	0.25504	1	12718	12718		4.756	0.81161	1	1590600	+		18751	9987	12391	12514	25397	25397					0.07455200137133033
SELISTVRQ	9	Unmodified	_SELISTVRQ_					0	0	0		ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF	ENSG00000106976|ENST00000372923|DNM1	ENSG00000106976|ENST00000372923|DNM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7697143554688	2	516.787838	1031.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.732	1	30.732	30.232	31.232	0								0	0	0	0.27427	1	4513	4513		4.3292	0.38484	1				18752	1538	12392	12515	25398	25398					0.046605376093339146
SELPLLSHHS	10	Unmodified	_SELPLLSHHS_					0	0	0		ENST00000331595.8_1_X:152773909-152774230:+|nuORF;ENST00000492658.1_1_X:152771329-152774230:+|nuORF	ENST00000331595.8_1_X:152773909-152774230:+|nuORF	ENST00000331595.8_1_X:152773909-152774230:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2937622070312	2	560.293288	1118.57202	0.4339	0.00024311	-1.3841	-0.00077549	-0.95017	-0.00053237	560.2924430228917	88.935	0.57107	88.967	88.679	89.25	0.032257					38	22	3	0	0	0	0.38912	1	22001	22001		13.042	2.2185	1	99405			18753	6058	12393	12516	25399	25399					0.017479399836020093
SELQARETF	9	Unmodified	_SELQARETF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7694091796875	2	540.769645	1079.52474	0.35651	0.00019279	-0.18059	-9.7659E-05	0.17592	9.5131E-05	540.769502071829	39.024	0.24803	39.111	38.994	39.242	0.086884					14	9	2	0	0	0	0.32831	1	6879	6879		2.9952	0.41776	1	31145			18754	4738	12394	12517	25400	25400					-0.011843392873970515
SEMDLINK	8	Unmodified	_SEMDLINK_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.2268371582031	2	475.236593	948.458632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.422	1	24.522	24.022	25.022	0.099739								0	0	0	0.38822	1	2555	2555		2.5775	0	1				18755	2241	12395	12518	25401	25401					-0.017658714537901687
SEMDTSVKF	9	Unmodified	_SEMDTSVKF_					0	0	0		nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-2|ITGAV	nc|ENSG00000138448|P06756-2|ITGAV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2391967773438	2	522.239332	1042.46411	0.024539	1.2815E-05	-0.50161	-0.00026196	-0.47707	-0.00024914	522.2392079067987	46.181	0.36928	46.181	45.981	46.351	0					26	12	3	0	0	0	0.17428	1	9188	9188		21.537	0	1	56805			18756	2912	12396	12519	25402	25402					-0.055421926619601436
SEMDTSVKF	9	Unmodified	_SEMDTSVKF_					0	0	0		nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-2|ITGAV	nc|ENSG00000138448|P06756-2|ITGAV	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	522.239332	1042.46411	0.007875	4.1127E-06	-0.038867	-2.0298E-05	-0.030992	-1.6185E-05	522.239358233183	46.107	0.35601	46.193	46.009	46.365	0.085617	0.0060949	0.00032074	NaN	21.537	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65642			18757	2912	12396	12519							-0.055421926619601436
SEMFIKMY	8	Unmodified	_SEMFIKMY_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.745849609375	2	524.745739	1047.47692	-0.30769	-0.00016146	0.10194	5.3492E-05	-0.20576	-0.00010797	524.7456413753972	21.563	0.31642	21.563	21.431	21.747	0					50	28	2	0	0	0	0.54081	1	1916	1916		0.79363	0	1	31700			18758	98	12397	12520	25403	25403					-0.04491452803404172
SENELKKAY	9	Unmodified	_SENELKKAY_					0	0	0		ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2801513671875	2	541.279846	1080.54514	0.13243	7.1683E-05	0.024658	1.3347E-05	0.15709	8.503E-05	541.2798482892081	23	0.34561	23.102	22.919	23.265	0.10178					61	33	3	0	0	0	0.30397	1	2169	2169		6.2058	2.9245	1	46661			18759	746	12398	12521	25404	25404					0.008088313724329055
SENELKKAY	9	Unmodified	_SENELKKAY_					0	0	0		ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	541.279846	1080.54514	-0.21172	-0.0001146	0.50714	0.00027451	0.29542	0.00015991	541.2800857659702	23.142	0.41473	23.142	23.025	23.44	0	0.020455	0.00027671	NaN	6.2058	73	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32103			18760	746	12398	12521							0.008088313724329055
SENPFLFNFT	10	Unmodified	_SENPFLFNFT_					0	0	0			REV__nc|ENSG00000106034|A4D0V7-2|CPED1	REV__nc|ENSG00000106034|A4D0V7-2|CPED1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.766845703125	2	608.287671	1214.56079	0.6927	0.00042136	-1.5025	-0.00091395	-0.8098	-0.00049259	608.7876771389409	63.588	0.22588	63.659	63.534	63.76	0.071018					9	7	2	0	0	0	0.31803	1	14317	14317		3.2813	0	1	53506	+		18761	8564	12399	12522	25405	25405					-0.037908821105247625
SENPGQTHF	9	Unmodified	_SENPGQTHF_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.72515869140625	2	508.725238	1015.43592	-0.18334	-9.3269E-05	-0.18304	-9.3115E-05	-0.36637	-0.00018638	508.7251793424552	28.701	0.40324	28.701	28.512	28.915	0					33	19	2	0	0	0	0.27929	1	3926	3926		9.3831	0.78985	1	40357			18762	357	12400	12523	25406	25406					-0.07117754527041598
SEPDFVAKFY	10	Unmodified	_SEPDFVAKFY_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.797119140625	2	601.790047	1201.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.77	1	63.77	63.27	64.27	0								0	0	0	0.24994	1	14509	14509		23.79	6.8475	1				18763	4795	12401	12524	25407	25407					-0.02717997967761221
SEPDFVAKFY	10	Unmodified	_SEPDFVAKFY_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7891845703125	2	601.790047	1201.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.9	1	63.9	63.4	64.4	0								0	0	0	0.051973	1	14549	14549		59.368	34.377	1				18764	4795	12401	12524	25408	25408					-0.02717997967761221
SEPDFVAKFY	10	Unmodified	_SEPDFVAKFY_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7899169921875	2	601.790047	1201.56554	0.56338	0.00033904	1.0328	0.00062152	1.5962	0.00096055	601.7908920970707	63.719	0.72903	63.79	63.617	64.346	0.071018					51	24	3	0	0	0	0.33926	1	14342	14342		18.373	3.7914	1	437860			18765	4795	12401	12524	25409	25409					-0.02717997967761221
SEPFWEDD	8	Unmodified	_SEPFWEDD_					0	0	0		nc|ENSG00000183423|Q3SXY7-2|LRIT3;ENSG00000183423|ENST00000594814|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.6986694335938	2	512.698355	1023.38216	-0.058846	-3.017E-05	1.1606	0.00059506	1.1018	0.00056489	512.6988085279103	31.229	0.48728	31.303	31.108	31.595	0.073782					48	24	4	0	0	0	0.53858	1	4552	4552		2.3027	0.4585	1	65090			18766	4921	12402	12525	25410	25410					-0.12859971749423948
SEPFWEDD	8	Unmodified	_SEPFWEDD_					0	0	0		nc|ENSG00000183423|Q3SXY7-2|LRIT3;ENSG00000183423|ENST00000594814|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.698355	1023.38216	-0.098003	-5.0246E-05	1.1941	0.00061223	1.0961	0.00056199	512.6988605198876	31.255	0.49316	31.255	31.078	31.571	0	-0.024097	1.3759E-05	NaN	2.3027	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56505			18767	4921	12402	12525							-0.12859971749423948
SEQKRLPPA	9	Unmodified	_SEQKRLPPA_					0	0	0		ENST00000438017.5_1_3:42695550-42695823:-|nuORF	ENST00000438017.5_1_3:42695550-42695823:-|nuORF	ENST00000438017.5_1_3:42695550-42695823:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2904052734375	2	513.290548	1024.56654	-0.0051538	-2.6454E-06	0.054438	2.7943E-05	0.049285	2.5297E-05	513.2904486356914	33.608	1.0173	33.608	33.378	34.395	0					85	38	4	0	0	0	0.3354	1	5558	5558		2.0598	0.57785	1	354730			18768	6513	12403	12526	25411	25411					0.05524261191817459
SEQSRNAVEEL	11	Unmodified	_SEQSRNAVEEL_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.304443359375	2	631.304581	1260.59461	-0.31181	-0.00019685	0.38178	0.00024102	0.069968	4.4171E-05	631.3047453757132	26.748	0.46566	26.748	26.574	27.04	0					87	32	4	0	0	0	0.4147	1	3319	3319		0.96228	0	1	146820	+		18769	9867	12404	12527	25412	25412					-0.025265054094234074
SEQSRNAVEEL	11	Unmodified	_SEQSRNAVEEL_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.3052368164062	2	631.304581	1260.59461	-0.096509	-6.0927E-05	0.2093	0.00013213	0.1128	7.1208E-05	631.3046692099865	26.648	0.35862	26.735	26.591	26.949	0.0867					75	27	4	0	0	0	0.4147	1	3163	3163		0.96228	0	1	134950	+		18770	9867	12404	12527	25413	25413					-0.025265054094234074
SERPPTYCEL	10	Unmodified	_SERPPTYCEL_					0	0	0		ENST00000595681.5_1_19:6754625-6763810:-|nuORF;nc|ENSG00000125731|Q9BRG2-2|SH2D3A;ENSG00000125731|ENST00000245908|SH2D3A	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2799072265625	2	597.776613	1193.53867	0.10559	6.3116E-05	0.73498	0.00043936	0.84057	0.00050247	597.7769385621087	104.1	0.45154	104.1	103.87	104.33	0					76	42	3	0	0	0	0.085977	2	26734	26734;26770		47.749	7.799	1	116410			18771	2306	12405	12528	25414;25415	25414					-0.050354298505908446
SERPPTYCEL	10	Unmodified	_SERPPTYCEL_					0	0	0		ENST00000595681.5_1_19:6754625-6763810:-|nuORF;nc|ENSG00000125731|Q9BRG2-2|SH2D3A;ENSG00000125731|ENST00000245908|SH2D3A	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7766723632812	2	597.776613	1193.53867	0.24326	0.00014542	0.32367	0.00019348	0.56693	0.0003389	597.776786038236	104.09	0.30608	104.13	103.87	104.17	0.03791					52	30	2	0	0	0	0.055325	2	26580	26580;26614		56.177	16.22	1	80937			18772	2306	12405	12528	25416;25417	25416					-0.050354298505908446
SERPTKVQL	9	Unmodified	_SERPTKVQL_					0	0	0		CON__P28800	CON__P28800	CON__P28800	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3019409179688	2	529.303655	1056.59276	0.41215	0.00021815	-3.6748	-0.0019451	-3.2626	-0.0017269	529.3018276694338	83.067	0.26917	83.067	82.872	83.141	0					14	8	2	0	0	0	0.2546	1	20404	20404		12.241	2.8575	1	70883		+	18773	223	12406	12529	25418	25418					0.06672530363289297
SERVGILSGH	10	Unmodified	_SERVGILSGH_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000111664|ENST00000229264|GNB3	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2551879882812	2	527.78563	1053.55671	0.090609	4.7822E-05	0.51594	0.00027231	0.60655	0.00032013	527.7860310136402	35.318	0.2741	35.318	35.205	35.479	0					16	9	2	0	0	0	0.31838	1	5927	5927		1.4819	0	1	21506			18774	1717	12407	12530	25419	25419					0.03207073186445086
SESAQSKML	9	Oxidation (M)	_SESAQSKM(Oxidation (M))L_		SESAQSKM(1)L		SESAQSKM(120)L	0	0	1		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7369079589844	2	498.736957	995.459361	-0.25745	-0.0001284	0.24602	0.0001227	-0.011422	-5.6966E-06	498.7370005422606	19.971	0.27754	19.971	19.805	20.083	0					87	29	4	0	0	0	0.0011184	1	1483	1483		121.53	64.993	1	355040			18775	4774;5204;5369	12408	12531	25420	25420		280			-0.03855076804734381
SESAQSKML	9	Oxidation (M)	_SESAQSKM(Oxidation (M))L_		SESAQSKM(1)L		SESAQSKM(120)L	0	0	1		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7368469238281	2	498.736957	995.459361	-0.25232	-0.00012584	0.13059	6.5129E-05	-0.12173	-6.0712E-05	498.73698270062414	20.178	0.44007	20.178	20.071	20.511	0					133	42	4	0	0	0	0.0011184	2	1551	1517;1551		121.53	67.701	1	395500			18776	4774;5204;5369	12408	12531	25421;25422	25422		280			-0.03855076804734381
SESAQSKML	9	Oxidation (M)	_SESAQSKM(Oxidation (M))L_		SESAQSKM(1)L		SESAQSKM(120)L	0	0	1		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7369079589844	2	498.736957	995.459361	-0.2335	-0.00011646	0.30637	0.0001528	0.072868	3.6342E-05	498.7370039378115	20.888	2.1799	20.888	20.453	22.633	0					434	213	3	0	0	0	0.0011184	4	1735	1677;1705;1735;1767		121.53	67.701	1	230650			18777	4774;5204;5369	12408	12531	25423;25424;25425;25426	25425		280			-0.03855076804734381
SESAQSKML	9	Oxidation (M)	_SESAQSKM(Oxidation (M))L_		SESAQSKM(1)L		SESAQSKM(140)L	0	0	1		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7369079589844	2	498.736957	995.459361	0.16847	8.4024E-05	-0.058972	-2.9411E-05	0.1095	5.4612E-05	498.7368147857821	19.887	0.24435	19.982	19.823	20.067	0.095234					75	28	3	0	0	0	0.00021732	1	1373	1373		136.39	82.559	1	331030			18778	4774;5204;5369	12408	12531	25427	25427		280			-0.03855076804734381
SESAQSKML	9	Oxidation (M)	_SESAQSKM(Oxidation (M))L_		SESAQSKM(1)L		SESAQSKM(130)L	0	0	1		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7369079589844	2	498.736957	995.459361	0.16204	8.0817E-05	-0.1217	-6.0695E-05	0.040347	2.0122E-05	498.736802030534	20.091	0.34531	20.186	20.052	20.397	0.095234					99	36	3	0	0	0	0.00090591	2	1433	1402;1433		125.04	71.205	1	362870			18779	4774;5204;5369	12408	12531	25428;25429	25429		280			-0.03855076804734381
SESAQSKML	9	Oxidation (M)	_SESAQSKM(Oxidation (M))L_		SESAQSKM(1)L		SESAQSKM(120)L	0	0	1		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7369384765625	2	498.736957	995.459361	0.14128	7.0464E-05	-0.03282	-1.6369E-05	0.10846	5.4095E-05	498.7368427715091	20.664	1.3579	20.764	20.401	21.759	0.099499					350	148	3	0	0	0	0.0011184	3	1581	1523;1551;1581		121.53	67.701	1	204970			18780	4774;5204;5369	12408	12531	25430;25431;25432	25432		280			-0.03855076804734381
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7397155761719	2	490.739499	979.464446	-0.17598	-8.6361E-05	0.60124	0.00029505	0.42525	0.00020869	490.73970156921183	27.537	0.76152	27.537	27.312	28.073	0					121	56	3	0	0	0	0.010553	3	3588	3552;3588;3627		65.474	36.392	1	445080			18781	4774;5204;5369	12408	12532	25433;25434;25435	25434					-0.026107729421141812
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000179344|ENST00000434651|HLA-DQB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7394714355469	2	490.739499	979.464446	-0.15756	-7.7319E-05	0.60938	0.00029905	0.45183	0.00022173	490.73973499773797	27.404	0.63171	27.49	27.286	27.918	0.0867					94	46	3	0	0	0	0.010553	3	3423	3389;3423;3462		65.474	33.168	1	395750			18782	4774;5204;5369	12408	12532	25436;25437;25438	25437					-0.026107729421141812
SESLFVSNHAY	11	Unmodified	_SESLFVSNHAY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2935791015625	2	627.293485	1252.57242	0.02089	1.3104E-05	0.44472	0.00027897	0.46561	0.00029207	627.2936933080675	49.579	0.65752	49.579	49.367	50.024	0					65	22	4	0	0	0	2.1704E-08	3	10164	10164;10214;10261		162.31	162.31	1	787610			18783	3421	12409	12533	25439;25440;25441	25439					-0.04376685087163423
SESLFVSNHAY	11	Unmodified	_SESLFVSNHAY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.2935180664062	2	627.293485	1252.57242	0.19961	0.00012521	0.23479	0.00014728	0.4344	0.0002725	627.2935187705112	49.503	0.77116	49.58	49.384	50.155	0.076607					63	27	4	0	0	0	9.0045E-05	2	10052	10005;10052		150.62	108.66	1	699630			18784	3421	12409	12533	25442;25443	25443					-0.04376685087163423
SESSDSGSGFW	11	Unmodified	_SESSDSGSGFW_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7643432617188	2	573.222725	1144.4309	0.35695	0.00020461	-0.37889	-0.00021719	-0.021935	-1.2573E-05	573.2226274517437	57.518	0.20175	57.586	57.437	57.639	0.068375					9	6	2	0	0	0	0.31057	1	12456	12456		5.2969	0.96765	1	64570			18785	2343	12410	12534	25444	25444					-0.1355410318030863
SETDTSLIRG	10	Unmodified	_SETDTSLIRG_					0	0	0		ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A	ENST00000482776.1_1_7:56124009-56126486:+|nuORF	ENST00000482776.1_1_7:56124009-56126486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7725219726562	2	539.772385	1077.53022	0.47311	0.00025537	0.19431	0.00010489	0.66742	0.00036026	539.7723089473353	68.498	0.42692	68.498	68.348	68.775	0					29	14	3	0	0	0	0.36006	1	15965	15965		16.149	1.3108	1	176860			18786	3297	12411	12535	25445	25445					-0.0054466049552956974
SETPKNRY	8	Unmodified	_SETPKNRY_					0	0	0		nc|ENSG00000185739|Q86TD4-3|SRL;ENSG00000185739|ENST00000399609|SRL;nc|ENSG00000185739|Q86TD4-1|SRL	nc|ENSG00000185739|Q86TD4-3|SRL	nc|ENSG00000185739|Q86TD4-3|SRL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7509765625	2	497.751256	993.487959	0.21647	0.00010775	-0.12763	-6.353E-05	0.088838	4.4219E-05	497.7512619411981	18.982	0.40229	19.072	18.9	19.302	0.089703					65	45	2	0	0	0	0.54097	1	1155	1155		0.69038	0	1	24948			18787	5040	12412	12536	25446	25446					-0.00904591113294373
SEVDLTRSF	9	Unmodified	_SEVDLTRSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.26416015625	2	527.264196	1052.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.497	1	51.497	50.997	51.997	0								0	0	0	0.034344	1	10768	10768		55.235	22.449	1				18788	1225	12413	12537	25447	25447					-0.01031741661677188
SEVDLTRSF	9	Unmodified	_SEVDLTRSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7655029296875	2	527.264196	1052.51384	0.21482	0.00011327	-0.75137	-0.00039617	-0.53655	-0.0002829	527.2638796597572	51.381	0.48083	51.451	51.154	51.635	0.069874					31	18	2	0	0	0	0.029489	1	10586	10586		51.488	26.497	1	132060			18789	1225	12413	12537	25448	25448					-0.01031741661677188
SEVGGLFFW	9	Unmodified	_SEVGGLFFW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.7779541015625	2	521.255643	1040.49673	0.31388	0.00016361	-0.21782	-0.00011354	0.096062	5.0073E-05	521.2555472444928	96.216	0.57925	96.216	95.78	96.359	0					48	30	2	0	0	0	0.2446	1	24338	24338		11.64	2.2929	1	88105			18790	4763	12414	12538	25449	25449					-0.021896174768016863
SEVGGLFFW	9	Unmodified	_SEVGGLFFW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.7780151367188	2	521.255643	1040.49673	0.25065	0.00013065	-0.20731	-0.00010806	0.043336	2.2589E-05	521.2555345030091	95.894	0.37511	95.933	95.715	96.09	0.038872					28	17	2	0	0	0	0.20004	1	24161	24161		23.148	5.0134	1	107830			18791	4763	12414	12538	25450	25450					-0.021896174768016863
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7793579101562	2	563.780013	1125.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.386	1	32.459	31.959	32.959	0.07378								0	0	0	0.26267	1	4885	4885		6.7232	0.99131	1				18792	3192	12415	12539	25451	25451					-0.012277489077177961
SEVLMPNR	8	Unmodified	_SEVLMPNR_					0	0	0		ENSG00000206043|ENST00000579455|C18orf63	ENSG00000206043|ENST00000579455|C18orf63	ENSG00000206043|ENST00000579455|C18orf63	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.25360107421875	2	473.244752	944.474951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.427	1	27.427	26.927	27.927	0								0	0	0	0.38822	1	3544	3544		2.5775	0	1				18793	5525	12416	12540	25452	25452					0.0004925450297150746
SEWLFVAGF	9	Unmodified	_SEWLFVAGF_					0	0	0			REV__WDR1|p.D134E|1|0.17|ENSG00000071127|chr4:10097867-10097867|A/C|missense_variant	REV__WDR1|p.D134E|1|0.17|ENSG00000071127|chr4:10097867-10097867|A/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.747802734375	2	528.263468	1054.51238	0.46346	0.00024483	3.6117	0.0019079	4.0751	0.0021527	528.2653355765901	85.926	0.26485	85.951	85.796	86.061	0.025169					13	9	2	0	0	0	0.25051	1	21129	21129		7.9102	0.62092	1	70570	+		18794	13333	12417	12541	25453	25453					-0.012693309597580082
SEWLFVAGF	9	Unmodified	_SEWLFVAGF_					0	0	0			REV__WDR1|p.D134E|1|0.17|ENSG00000071127|chr4:10097867-10097867|A/C|missense_variant	REV__WDR1|p.D134E|1|0.17|ENSG00000071127|chr4:10097867-10097867|A/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	528.263468	1054.51238	0.31564	0.00016674	3.5018	0.0018499	3.8175	0.0020166	528.2652010810704	85.964	0.2951	85.964	85.83	86.125	0	0.0064136	-2.3288E-05	NaN	7.9102	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69170	+		18795	13333	12417	12541							-0.012693309597580082
SEYYRPEI	8	Unmodified	_SEYYRPEI_					0	0	0			REV__nc|ENSG00000164929|Q8WXS3-6|BAALC	REV__nc|ENSG00000164929|Q8WXS3-6|BAALC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7550659179688	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.172	1	64.172	63.672	64.672	0								0	0	0	0.3878	1	14632	14632		14.838	1.7958	1		+		18796	10010	12418	12542	25454	25454					-0.03315126690381476
SEYYRPEI	8	Unmodified	_SEYYRPEI_					0	0	0			REV__nc|ENSG00000164929|Q8WXS3-6|BAALC	REV__nc|ENSG00000164929|Q8WXS3-6|BAALC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7553100585938	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.167	1	64.238	63.738	64.738	0.071014								0	0	0	0.38822	1	14487	14487		7.9102	0	1		+		18797	10010	12418	12542	25455	25455					-0.03315126690381476
SFAHDLAPL	9	Unmodified	_SFAHDLAPL_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.75042724609375	2	485.753267	969.491981	0.33926	0.0001648	-3.7254	-0.0018096	-3.3861	-0.0016448	485.75030473241503	54.79	0.58529	54.79	54.657	55.243	0					28	21	2	0	0	0	0.25209	1	11807	11807		12.532	0.89125	1	67252			18798	1662	12419	12543	25456	25456					0.006014983803993346
SFAIDIIASL	10	Unmodified	_SFAIDIIASL_					0	0	0			REV__tr|U7T3C6|U7T3C6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00351PE=4SV=1	REV__tr|U7T3C6|U7T3C6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00351PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2542114257812	2	525.297507	1048.58046	0.49401	0.0002595	-0.018101	-9.5087E-06	0.47591	0.00024999	525.7989951813265	55.182	0.42748	55.182	55.04	55.467	0					20	15	2	0	0	0	0.31667	1	11972	11972		8.7454	0	1	62380	+		18799	13278	12420	12544	25457	25457					0.05811493900228015
SFAIGFYLLL	10	Unmodified	_SFAIGFYLLL_					0	0	0		ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3132934570312	2	572.326068	1142.63758	0.2629	0.00015047	0.13016	7.4493E-05	0.39306	0.00022496	572.3261013633596	83.385	0.45081	83.406	83.164	83.615	0.021744					31	15	3	0	0	0	0.27354	2	20296	20296;20340		25.399	2.663	1	142270			18800	2535	12421	12545	25458;25459	25458					0.0719696117660078
SFANRVQLF	9	Unmodified	_SFANRVQLF_					0	0	0			REV__ENST00000572567.5_1_16:14334355-14334679:+|nuORF	REV__ENST00000572567.5_1_16:14334355-14334679:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2530517578125	2	541.293091	1080.57163	0.58253	0.00031532	0.82833	0.00044837	1.4109	0.00076369	541.2928623302912	47.486	0.23478	47.569	47.405	47.639	0.083096					15	9	2	0	0	0	0.24263	1	9441	9441		12.532	0	1	31462	+		18801	12526	12422	12546	25460	25460					0.03456565054420935
SFAVRIDSLAM	11	Unmodified	_SFAVRIDSLAM_					0	0	0			REV__ENSG00000214402|ENST00000408973|LCNL1	REV__ENSG00000214402|ENST00000408973|LCNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.3186645507812	2	605.318448	1208.62234	0.091928	5.5646E-05	-0.61093	-0.00036981	-0.519	-0.00031416	605.3180937065082	44.604	0.81847	44.604	44.387	45.205	0					67	29	4	0	0	0	0.37393	1	8654	8654		9.544	1.3884	1	300850	+		18802	11003	12423	12547	25461	25461					0.02637726317107081
SFAVRIDSLAM	11	Unmodified	_SFAVRIDSLAM_					0	0	0			REV__ENSG00000214402|ENST00000408973|LCNL1	REV__ENSG00000214402|ENST00000408973|LCNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3182983398438	2	605.318448	1208.62234	0.37357	0.00022613	-0.78405	-0.0004746	-0.41047	-0.00024847	605.3179425580761	44.533	0.69899	44.621	44.334	45.033	0.087543					57	25	3	0	0	0	0.37393	1	8502	8502		9.544	1.3884	1	254170	+		18803	11003	12423	12547	25462	25462					0.02637726317107081
SFCDFESQGLF	11	Unmodified	_SFCDFESQGLF_					0	0	0			REV__ENSG00000179862|ENST00000372638|CITED4	REV__ENSG00000179862|ENST00000372638|CITED4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.8494873046875	3	427.181506	1278.52269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.628	1	95.628	95.128	96.128	0								0	0	0	0.32709	1	24215	24215		2.4348	0	1		+		18804	10490	12424	12548	25463	25463					-0.10543136087494531
SFCTHSACFI	10	Unmodified	_SFCTHSACFI_					0	0	0			REV__ENST00000507917.5_1_4:44704555-44704834:-|nuORF	REV__ENST00000507917.5_1_4:44704555-44704834:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2345581054688	2	558.23607	1114.45759	0.70421	0.00039312	-1.3077	-0.00072999	-0.60346	-0.00033688	558.2342677082403	93.099	0.50761	93.099	92.851	93.358	0					53	19	4	0	0	0	0.44246	1	23475	23475		6.2058	2.2614	1	173250	+		18805	12235	12425	12549	25464	25464					-0.09506409094342416
SFDADVQQSL	10	Unmodified	_SFDADVQQSL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2589721679688	2	555.259111	1108.50367	0.54226	0.00030109	-0.90623	-0.00050319	-0.36397	-0.0002021	555.2584156076488	53.534	1.2266	53.534	53.254	54.48	0					79	47	3	0	0	0	0.057777	1	11401	11401		55.503	3.2344	1	287830	+		18806	12927	12426	12550	25465	25465					-0.04624349386904214
SFDADVQQSL	10	Unmodified	_SFDADVQQSL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7952880859375	2	555.259111	1108.50367	0.54226	0.00030109	-0.90623	-0.00050319	-0.36397	-0.0002021	555.2584156076488	53.534	1.2266	53.534	53.254	54.48	0					79	47	3	0	0	0	0.26315	1	11389	11389		36.506	3.7205	1	287830	+		18807	12927	12426	12550	25466	25466					-0.04624349386904214
SFDADVQQSL	10	Unmodified	_SFDADVQQSL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.259033203125	2	555.259111	1108.50367	0.67812	0.00037653	-0.72052	-0.00040008	-0.042399	-2.3543E-05	555.2585257514413	53.496	0.93508	53.562	53.128	54.063	0.06543					69	42	3	0	0	0	0.16094	1	11259	11259		57.722	6.0922	1	223200	+		18808	12927	12426	12550	25467	25467					-0.04624349386904214
SFDGIIAMM	9	2 Oxidation (M)	_SFDGIIAM(Oxidation (M))M(Oxidation (M))_		SFDGIIAM(1)M(1)		SFDGIIAM(42)M(42)	0	0	2		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7250671386719	2	508.725003	1015.43545	0.2557	0.00013008	-0.040929	-2.0822E-05	0.21477	0.00010926	508.7247630357336	61.68	0.47213	61.68	61.595	62.067	0					30	23	2	0	0	0	0.05573	2	13873	13873;13923		42.095	18.946	1	463450			18809	5542	12427	12551	25468;25469	25468		314;315			-0.07164633562751987
SFDIFIVRT	9	Unmodified	_SFDIFIVRT_					0	0	0			REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2	REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7830810546875	2	549.303124	1096.5917	0.16421	9.0199E-05	-0.6905	-0.00037929	-0.52629	-0.00028909	549.3028277617057	45.958	0.30783	46.043	45.936	46.243	0.085621					21	11	2	0	0	0	0.25051	1	8981	8981		7.9102	1.187	1	51804	+		18810	8218	12428	12552	25470	25470					0.04726315994366814
SFDKTASVFLL	11	Unmodified	_SFDKTASVFLL_					0	0	0		nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.8340454101562	2	614.334621	1226.65469	-0.17595	-0.00010809	-2.9089	-0.001787	-3.0848	-0.0018951	614.3329897904462	56.766	0.31466	56.766	56.57	56.885	0					20	11	2	0	0	0	0.35693	1	12365	12365		11.495	2.7493	1	120490			18811	589	12429	12553	25471	25471					0.05042836991765398
SFDKTASVFLL	11	Unmodified	_SFDKTASVFLL_					0	0	0		nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.334621	1226.65469	0.0067587	4.1521E-06	-3.091	-0.0018989	-3.0843	-0.0018948	614.3328585915435	56.661	0.31013	56.727	56.543	56.853	0.066452	-0.01933	-0.00016537	NaN	11.495	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139360			18812	589	12429	12553							0.05042836991765398
SFDLAKVLL	9	Unmodified	_SFDLAKVLL_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.30224609375	2	503.302593	1004.59063	0.20081	0.00010107	1.0503	0.00052861	1.2511	0.00062967	503.3032196036291	79.235	0.60609	79.262	79.042	79.648	0.026436					42	21	3	0	0	0	0.038996	1	19068	19068		45.74	14.472	1	218450			18813	2167	12430	12554	25472	25472					0.08852101625473097
SFDLAKVLL	9	Unmodified	_SFDLAKVLL_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	503.302593	1004.59063	0.36514	0.00018378	1.3252	0.00066696	1.6903	0.00085073	503.30353767311743	79.249	0.69168	79.249	79.047	79.739	0	-0.0063007	0.0001672	NaN	45.74	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161640			18814	2167	12430	12554							0.08852101625473097
SFDLHRCIE	9	Unmodified	_SFDLHRCIE_					0	0	0			REV__ENST00000413755.5_1_20:37063835-37063979:-|nuORF	REV__ENST00000413755.5_1_20:37063835-37063979:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.805419921875	2	560.266216	1118.51788	0.41486	0.00023243	-0.88842	-0.00049775	-0.47357	-0.00026532	560.7679017676003	83.269	0.34431	83.291	83.017	83.361	0.021744					14	11	2	0	0	0	0.21603	1	20231	20231		20.454	8.8133	1	75996	+		18815	11789	12431	12555	25473	25473					-0.036639754395991986
SFDLLPREF	9	Unmodified	_SFDLLPREF_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.3055419921875	2	562.292756	1122.57096	0.048388	2.7208E-05	-1.2957	-0.00072856	-1.2473	-0.00070135	562.2920340896329	73.059	0.53831	73.059	72.775	73.313	0					40	18	3	0	0	0	0.056368	2	17335	17320;17335		41.956	15.072	1	225360			18816	2086	12432	12556	25474;25475	25475					0.014577256147049411
SFDNCRRNA	9	Unmodified	_SFDNCRRNA_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.307861328125	2	541.743439	1081.47233	0.57884	0.00031358	0.95258	0.00051605	1.5314	0.00082963	541.7439156484173	100.39	0.55473	100.43	100.29	100.84	0.042831					69	31	3	0	0	0	0.24791	1	25498	25498		10.074	10.074	1	268740			18817	2819	12433	12557	25476	25476					-0.06515200901981189
SFDSGSVRL	9	Unmodified	_SFDSGSVRL_					0	0	0		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.24554443359375	2	484.245806	966.47706	0.052884	2.5609E-05	0.23441	0.00011351	0.28729	0.00013912	484.24577869554236	46.996	0.45377	46.996	46.839	47.293	0					37	15	3	0	0	0	0.023873	2	9400	9400;9454		55.503	24.866	1	203830			18818	2009	12434	12558	25477;25478	25477					-0.007519934875631407
SFDSGSVRL	9	Unmodified	_SFDSGSVRL_					0	0	0		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2459411621094	2	484.245806	966.47706	0.025471	1.2334E-05	0.24394	0.00011813	0.26942	0.00013046	484.2458632970515	46.927	0.42845	47.01	46.79	47.219	0.083096					33	16	3	0	0	0	0.032194	1	9241	9241		49.554	16.769	1	162170			18819	2009	12434	12558	25479	25479					-0.007519934875631407
SFDSTVRL	8	Unmodified	_SFDSTVRL_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	462.7428283691406	2	462.742899	923.471246	0.27701	0.00012819	-0.19911	-9.2137E-05	0.077901	3.6048E-05	462.7427023390857	48.687	0.9139	48.687	48.453	49.367	0					70	31	4	0	0	0	0.023045	2	9945	9903;9945		110.67	28.785	1	921440			18820	1077	12435	12559	25480;25481	25481					0.006449080007655539
SFDSTVRL	8	Unmodified	_SFDSTVRL_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	462.7427673339844	2	462.742899	923.471246	0.030044	1.3903E-05	0.0090723	4.1981E-06	0.039116	1.8101E-05	462.7428303538379	48.599	0.6671	48.679	48.442	49.109	0.080029					51	22	3	0	0	0	0.023045	2	9736	9736;9787		75.761	21.928	1	790260			18821	1077	12435	12559	25482;25483	25482					0.006449080007655539
SFDTGFTSF	9	Unmodified	_SFDTGFTSF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.22100830078125	2	504.71909	1007.42363	0.22992	0.00011604	-0.020359	-1.0276E-05	0.20956	0.00010577	504.718982059519	74.343	0.625	74.343	74.118	74.743	0					36	22	3	0	0	0	0.0046499	1	17723	17723		85.272	24.882	1	213020			18822	1500	12436	12560	25484	25484					-0.07978790990091511
SFDTGFTSF	9	Unmodified	_SFDTGFTSF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.71917724609375	2	504.71909	1007.42363	0.36163	0.00018252	-0.2092	-0.00010559	0.15243	7.6933E-05	504.7190077773322	74.372	0.44061	74.42	74.179	74.619	0.048546					35	15	3	0	0	0	0.0043613	1	17563	17563		96.285	35.895	1	218220			18823	1500	12436	12560	25485	25485					-0.07978790990091511
SFDVLSVALF	10	Unmodified	_SFDVLSVALF_					0	0	0		ENST00000545653.5_1_5:39373349-39375117:-|nuORF	ENST00000545653.5_1_5:39373349-39375117:-|nuORF	ENST00000545653.5_1_5:39373349-39375117:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.315673828125	2	549.297507	1096.58046	0.42148	0.00023152	-3.1139	-0.0017105	-2.6924	-0.0014789	549.2954807248836	71.526	0.54527	71.526	71.181	71.726	0					27	18	3	0	0	0	0.31456	1	16804	16804		14.838	0.93222	1	103380			18824	7076	12437	12561	25486	25486					0.03603493900232024
SFDVLSVALF	10	Unmodified	_SFDVLSVALF_					0	0	0		ENST00000545653.5_1_5:39373349-39375117:-|nuORF	ENST00000545653.5_1_5:39373349-39375117:-|nuORF	ENST00000545653.5_1_5:39373349-39375117:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.297507	1096.58046	0.41856	0.00022991	-3.1084	-0.0017075	-2.6899	-0.0014775	549.2957751038407	71.383	0.47461	71.442	71.288	71.763	0.058578	-0.042249	3.6918E-06	NaN	14.838	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131690			18825	7076	12437	12561							0.03603493900232024
SFECECFEGY	10	Unmodified	_SFECECFEGY_					0	0	0		nc|ENSG00000138829|P35556-2|FBN2;ENSG00000138829|ENST00000262464|FBN2	nc|ENSG00000138829|P35556-2|FBN2	nc|ENSG00000138829|P35556-2|FBN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.1445617675781	3	405.144064	1212.41036	0.16153	6.5443E-05	0.8126	0.00032922	0.97413	0.00039466	405.1443914832282	38.35	0.45535	38.437	38.262	38.717	0.08688					28	15	2	0	0	0	0.46656	1	6708	6708		0.69767	0.2894	1	85718			18826	2944	12438	12562	25487	25487					-0.18734733155997674
SFEEKPVYI	9	Unmodified	_SFEEKPVYI_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2886352539062	2	556.28714	1110.55973	0.32423	0.00018036	1.9216	0.0010689	2.2458	0.0012493	556.2882019324703	51.342	0.38328	51.342	51.179	51.562	0					26	12	3	0	0	0	0.064247	1	10724	10724		40.239	23.126	1	105740			18827	1750	12439	12563	25488	25488					0.008869035205634646
SFEIKIASL	9	Unmodified	_SFEIKIASL_					0	0	0			REV__ENSG00000168530|ENST00000352451|MYL1	REV__ENSG00000168530|ENST00000352451|MYL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7572326660156	2	504.292225	1006.5699	0.26067	0.00013146	-0.22275	-0.00011233	0.037927	1.9126E-05	504.2920341153164	83.898	0.33954	83.919	83.723	84.063	0.021744					17	11	2	0	0	0	0.23831	1	20467	20467		17.443	1.2935	1	86831	+		18828	10154	12440	12564	25489	25489					0.06687511245786482
SFEIKIASL	9	Unmodified	_SFEIKIASL_					0	0	0			REV__ENSG00000168530|ENST00000352451|MYL1	REV__ENSG00000168530|ENST00000352451|MYL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.292225	1006.5699	0.54768	0.00027619	0.075987	3.832E-05	0.62367	0.00031451	504.2923713090425	83.878	0.3564	83.878	83.749	84.105	0	-0.020572	0.00017979	NaN	17.443	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109630	+		18829	10154	12440	12564							0.06687511245786482
SFFCFFFYFAP	11	Unmodified	_SFFCFFFYFAP_					0	0	0			REV__ENST00000338785.7_1_21:38885904-38886156:+|nuORF	REV__ENST00000338785.7_1_21:38885904-38886156:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2626037597656	3	474.879099	1421.61547	0.0070311	3.3389E-06	-1.7257	-0.00081949	-1.7186	-0.00081615	475.21260488727773	52.434	0.12869	52.501	52.393	52.521	0.067173					6	4	2	0	0	0	0.31097	1	10889	10889		1.3296	0.11481	1	36970	+		18830	11452	12441	12565	25490	25490					-0.07847586563457298
SFFDGFEGGFN	11	Unmodified	_SFFDGFEGGFN_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3445434570312	2	612.253828	1222.4931	0.27955	0.00017116	1.708	0.0010457	1.9875	0.0012169	612.254911944248	76.603	0.6507	76.643	76.441	77.092	0.039238					51	23	3	0	0	0	0.28093	1	18241	18241		26.268	15.444	1	203860			18831	1777	12442	12566	25491	25491					-0.10924332041304297
SFFELYLL	8	Unmodified	_SFFELYLL_					0	0	0			REV__nc|ENSG00000153827|Q14669-4|TRIP12	REV__nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2763061523438	2	516.276044	1030.53753	0.35007	0.00018073	-0.21886	-0.00011299	0.13121	6.774E-05	516.2757589166011	74.241	0.6546	74.241	74.006	74.661	0					53	24	3	0	0	0	0.49441	1	17753	17753		13.508	0.46542	1	225650	+		18832	9699	12443	12567	25492	25492					0.023487238428060664
SFFERDYF	8	Unmodified	_SFFERDYF_					0	0	0			REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7474365234375	2	555.748182	1109.48181	0.4977	0.0002766	-2.3793	-0.0013223	-1.8816	-0.0010457	555.7468656568303	69.341	0.49115	69.404	69.233	69.724	0.062126					29	17	2	0	0	0	0.52924	1	16051	16051		8.5933	0.68312	1	268560	+		18833	8861	12444	12568	25493	25493					-0.06855109344814991
SFFFFNFVR	9	Unmodified	_SFFFFNFVR_					0	0	0		nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF	nc|ENSG00000168658|Q502W6-8|VWA3B	nc|ENSG00000168658|Q502W6-8|VWA3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5561828613281	3	404.206315	1209.59712	0.062201	2.5142E-05	0.24232	9.7947E-05	0.30452	0.00012309	404.53981128284715	40.121	0.080036	40.121	40.071	40.151	0					4	2	2	0	0	0	0.25822	1	7325	7325		2.7352	0.23671	1	5813.8			18834	6394	12445	12569	25494	25494					0.0007003957682627515
SFFGDWEL	8	Unmodified	_SFFGDWEL_					0	0	0			REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF	REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.72381591796875	2	500.724175	999.433798	-0.10274	-5.1443E-05	-0.62055	-0.00031073	-0.72329	-0.00036217	500.72390019907175	31.941	0.8875	31.941	31.517	32.405	0					100	35	4	0	0	0	0.3322	1	4846	4846		32.117	0	1	338820	+		18835	9070	12446	12570	25495	25495					-0.06594183264860476
SFFLSCSLCL	10	Unmodified	_SFFLSCSLCL_					0	0	0		ENST00000581424.1_1_17:61228485-61228857:+|nuORF	ENST00000581424.1_1_17:61228485-61228857:+|nuORF	ENST00000581424.1_1_17:61228485-61228857:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2645874023438	2	560.264296	1118.51404	0.68525	0.00038392	-0.19595	-0.00010978	0.4893	0.00027414	560.2642626779891	82.178	1.1198	82.178	81.78	82.9	0					110	39	5	0	0	0	0.23678	1	20094	20094		43.858	7.8141	1	1914700			18836	7223	12447	12571	25496	25496					-0.040477812576909855
SFFQLPMD	8	Unmodified	_SFFQLPMD_					0	0	0			REV__ENST00000356884.10_1_9:95475590-95475719:-|nuORF	REV__ENST00000356884.10_1_9:95475590-95475719:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.730712890625	2	492.728403	983.442254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.126	1	98.126	97.626	98.626	0								0	0	0	0.38822	1	24976	24976		8.5933	0	1		+		18837	11509	12448	12572	25497	25497					-0.050129526198816166
SFFSPCIFPLL	11	Unmodified	_SFFSPCIFPLL_					0	0	0		tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1	tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1	tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.8192138671875	2	635.83066	1269.64677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.538	1	80.562	80.062	81.062	0.023605								0	0	0	0.32586	1	19467	19467		5.7319	0	1				18838	13707	12449	12573	25498	25498					0.022729864706434455
SFFVFGVYV	9	Unmodified	_SFFVFGVYV_					0	0	0			REV__nc|ENSG00000170419|Q8TAG5|VSTM2A	REV__nc|ENSG00000170419|Q8TAG5|VSTM2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7958984375	2	532.776211	1063.53787	0.59179	0.00031529	-0.60663	-0.0003232	-0.014841	-7.9071E-06	532.7759251976051	101.63	0.32436	101.67	101.52	101.85	0.042656					33	25	2	0	0	0	0.3182	1	25848	25848		4.3292	1.7518	1	74509	+		18839	10213	12450	12574	25499	25499					0.008641435626714156
SFGDPFFFL	9	Unmodified	_SFGDPFFFL_					0	0	0			REV__ENST00000380599.8_1_17:7364268-7364400:-|nuORF	REV__ENST00000380599.8_1_17:7364268-7364400:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.3272705078125	2	538.758018	1075.50148	0.28893	0.00015567	0.30942	0.0001667	0.59836	0.00032237	538.7581222019439	95.478	0.64263	95.478	95.305	95.948	0					48	29	2	0	0	0	0.2298	1	24158	24158		16.942	0	1	722480	+		18840	11667	12451	12575	25500	25500					-0.033247333340341356
SFGDPFFFL	9	Unmodified	_SFGDPFFFL_					0	0	0			REV__ENST00000380599.8_1_17:7364268-7364400:-|nuORF	REV__ENST00000380599.8_1_17:7364268-7364400:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.327392578125	2	538.758018	1075.50148	0.41461	0.00022338	0.16921	9.1166E-05	0.58383	0.00031454	538.7581675090071	95.503	0.59175	95.542	95.332	95.924	0.038864					51	27	2	0	0	0	0.2298	1	23989	23989		16.942	0	1	406410	+		18841	11667	12451	12575	25501	25501					-0.033247333340341356
SFGFSWFWF	9	Unmodified	_SFGFSWFWF_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1833801269531	3	404.183399	1209.52837	0.16734	6.7636E-05	-0.55245	-0.00022329	-0.38511	-0.00015566	404.18303591266374	47.071	0.63979	47.154	46.937	47.577	0.083096					37	24	2	0	0	0	0.3354	1	9305	9305		1.0715	0.10919	1	81338			18842	5602	12452	12576	25502	25502					-0.06801624722879751
SFGSIFSSTF	10	Unmodified	_SFGSIFSSTF_					0	0	0		ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2559814453125	2	540.25584	1078.49713	0.48443	0.00026171	0.11397	6.1571E-05	0.59839	0.00032328	540.2560256377757	82.024	0.45239	82.046	81.818	82.271	0.021866					26	15	3	0	0	0	0.30896	1	19912	19912		18.146	4.2403	1	205910			18843	6036	12453	12577	25503	25503					-0.03898242547643349
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7647094726562	2	558.764697	1115.51484	0.032351	1.8076E-05	-0.32687	-0.00018264	-0.29452	-0.00016457	558.764619990909	33.161	0.78649	33.161	32.985	33.771	0					58	29	3	0	0	0	0.038996	2	5234	5234;5278		45.74	25.286	1	113660			18844	3560	12454	12578	25504;25505	25504					-0.038294825021012
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7643432617188	2	558.764697	1115.51484	0.15532	8.6787E-05	-0.19649	-0.00010979	-0.041171	-2.3005E-05	558.7645238174803	33.114	0.70232	33.188	32.992	33.695	0.074322					67	27	3	0	0	0	0.078774	2	5081	5081;5131		37.075	23.371	1	157280			18845	3560	12454	12578	25506;25507	25506					-0.038294825021012
SFHSHCRKR	9	Unmodified	_SFHSHCRKR_					0	0	0		nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2940063476562	2	579.290891	1156.56723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.847	1	47.927	47.427	48.427	0.080029								0	0	0	0.28631	1	9530	9530		1.8442	0.19162	1				18846	1469	12455	12579	25508	25508					-0.004792226401377775
SFHTLVRE	8	Unmodified	_SFHTLVRE_					0	0	0			REV__ENSG00000146005|ENST00000274710|PSD2	REV__ENSG00000146005|ENST00000274710|PSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.75372314453125	2	494.764166	987.513779	0.16565	8.1957E-05	-0.0050044	-2.476E-06	0.16065	7.9481E-05	494.76410991699703	34.295	1.8183	34.295	33.771	35.589	0					178	68	4	0	0	0	0.52502	1	5731	5731		9.3474	0.75416	1	309050	+		18847	9531	12456	12580	25509	25509					0.01952303128996391
SFHTMAQYI	9	Unmodified	_SFHTMAQYI_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2589111328125	2	549.257859	1096.50117	0.67198	0.00036909	0.21392	0.0001175	0.88589	0.00048658	549.2577972738353	92.806	0.44567	92.806	92.682	93.128	0					28	16	2	0	0	0	0.32614	1	23362	23362		3.2813	0.78282	1	87063	+		18848	9285	12457	12581	25510	25510					-0.04322476325569369
SFHTMAQYI	9	Unmodified	_SFHTMAQYI_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	549.257859	1096.50117	0.67198	0.00036909	0.21392	0.0001175	0.88589	0.00048658	549.2577972738353	92.806	0.44567	92.806	92.682	93.128	0	-0.0074019	-3.8159E-05	NaN	3.2813	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87063	+		18849	9285	12457	12581							-0.04322476325569369
SFHTMAQYI	9	Unmodified	_SFHTMAQYI_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.257859	1096.50117	0.66114	0.00036314	0.29586	0.0001625	0.957	0.00052564	549.2578005269839	92.783	0.39702	92.821	92.671	93.068	0.037369	0.0074019	5.1856E-05	NaN	3.2813	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149740	+		18850	9285	12457	12581							-0.04322476325569369
SFIGQNSSTCM	11	Unmodified	_SFIGQNSSTCM_					0	0	0		ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.7468872070312	2	587.746998	1173.47944	0.64427	0.00037867	-0.20801	-0.00012225	0.43626	0.00025641	587.7466303526163	38.383	0.67711	38.47	38.262	38.939	0.08688					55	24	4	0	0	0	0.3104	1	6662	6662		7.1017	0	1	174880			18851	3045	12458	12582	25511	25511					-0.1003564913644368
SFISGLFNF	9	Unmodified	_SFISGLFNF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2637329101562	2	516.263468	1030.51238	0.54369	0.00028069	-0.0033877	-1.749E-06	0.5403	0.00027894	516.2634486290607	99.428	0.32549	99.428	99.255	99.581	0					21	16	2	0	0	0	0.065576	1	25376	25376		39.95	7.6442	1	202450			18852	2533	12459	12583	25512	25512					-0.0016533095977138146
SFISGLFNF	9	Unmodified	_SFISGLFNF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2636108398438	2	516.263468	1030.51238	0.54607	0.00028192	-0.057269	-2.9566E-05	0.4888	0.00025235	516.2632474303163	99.461	0.36884	99.504	99.251	99.62	0.042839					42	23	2	0	0	0	0.048027	1	25207	25207		43.772	7.6454	1	132070			18853	2533	12459	12583	25513	25513					-0.0016533095977138146
SFITSSWTF	9	Unmodified	_SFITSSWTF_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2587280273438	2	538.258382	1074.50221	0.58463	0.00031468	-0.52658	-0.00028343	0.05805	3.1246E-05	538.2580475080209	85.441	0.30035	85.441	85.254	85.554	0					16	8	2	0	0	0	0.00038046	1	21107	21107		133.7	82.847	1	1615200			18854	1949	12460	12584	25514	25514					-0.03205938685005094
SFITSSWTF	9	Unmodified	_SFITSSWTF_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2581787109375	2	538.258382	1074.50221	0.76871	0.00041376	2.836	0.0015265	3.6047	0.0019403	538.2600861671956	85.602	1.0545	85.627	85.272	86.327	0.025169					110	40	4	0	0	0	1.7467E-05	2	20983	20942;20983		141.83	52.089	1	2611200			18855	1949	12460	12584	25515;25516	25516					-0.03205938685005094
SFITSVYNF	9	Unmodified	_SFITSVYNF_					0	0	0		CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.N1018Hfs*6|1|0.03|ENSG00000107611|chr10:17065595-17065596|-/TAGAATAAAGGGTAGTG|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2559814453125	2	539.266207	1076.51786	0.53045	0.00028605	2.2328	0.0012041	2.7632	0.0014901	539.2681637507459	81.772	0.74796	81.794	81.523	82.271	0.021866					46	26	3	0	0	0	0.21398	1	19912	19912		16.942	0	1	99459			18856	257	12461	12585	25517	25517					-0.017336521679681027
SFIVEKPSGMA	11	Unmodified	_SFIVEKPSGMA_					0	0	0			REV__nc|ENSG00000041982|P24821-6|TNC	REV__nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.289794921875	2	583.299724	1164.5849	0.65718	0.00038334	-1.9746	-0.0011518	-1.3174	-0.00076842	583.2975681081539	69.009	0.464	69.009	68.775	69.239	0					36	17	3	0	0	0	0.38315	1	16073	16073		8.1555	0.24537	1	250030	+		18857	8032	12462	12586	25518	25518					0.009186350515165032
SFIVPFFDQ	9	Unmodified	_SFIVPFFDQ_					0	0	0			REV__ENSG00000268606|ENST00000684311|MAGEA2	REV__ENSG00000268606|ENST00000684311|MAGEA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2777099609375	2	550.276575	1098.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.75	1	104.75	104.25	105.25	0								0	0	0	0.28527	1	26967	26967		2.0598	0	1		+		18858	7818	12463	12587	25519	25519					-0.0067306178827948315
SFIVRKKIC	9	Unmodified	_SFIVRKKIC_					0	0	0			REV__tr|U7T3D0|U7T3D0_FUSNUZinctransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00356PE=4SV=1	REV__tr|U7T3D0|U7T3D0_FUSNUZinctransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00356PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.5956420898438	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.323	1	76.363	75.863	76.863	0.03923								0	0	0	0.27427	1	18183	18183		4.3292	0	1		+		18859	13279	12464	12588	25520	25520					0.10515245630199388
SFKEASCKTP	10	Unmodified	_SFKEASCKTP_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7825927734375	2	549.268424	1096.5223	0.26864	0.00014756	-0.89611	-0.0004922	-0.62746	-0.00034465	549.2674138018266	50.865	5.1143	50.865	46.744	51.858	0					238	178	3	0	0	0	0.31595	1	10860	10860		11.495	4.2055	1	156660			18860	2146	12465	12589	25521	25521					-0.02210511016687633
SFKHYVNG	8	Unmodified	_SFKHYVNG_					0	0	0			REV__NPAP1|p.C309Vfs*81|1|0.16|ENSG00000185823|chr15:24676791-24676791|C/-|frameshift_variant	REV__NPAP1|p.C309Vfs*81|1|0.16|ENSG00000185823|chr15:24676791-24676791|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.75244140625	2	476.237784	950.461016	-0.011807	-5.6231E-06	0.10582	5.0396E-05	0.094015	4.4773E-05	476.2376523269852	51.614	0.41153	51.684	51.503	51.915	0.069874					23	14	2	0	0	0	0.53345	1	10714	10714		5.7604	0.52976	1	96878	+		18861	10684	12466	12590	25522	25522					-0.01619654933813308
SFKKKEKK	8	Unmodified	_SFKKKEKK_					0	0	0			REV__SLCO5A1|p.K380E|1|0.07|ENSG00000137571|chr8:69755544-69755544|T/C|missense_variant	REV__SLCO5A1|p.K380E|1|0.07|ENSG00000137571|chr8:69755544-69755544|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.82098388671875	2	511.821484	1021.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.385	1	76.425	75.925	76.925	0.03923								0	0	0	0.38822	1	18202	18202		2.5775	0.27475	1		+		18862	12991	12467	12591	25523	25523					0.11846612610941065
SFKQISYF	8	Unmodified	_SFKQISYF_					0	0	0			REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8184814453125	2	510.263468	1018.51238	0.47615	0.00024296	-0.18185	-9.2791E-05	0.2943	0.00015017	510.76491817280026	70.784	0.24394	70.784	70.618	70.861	0					14	8	2	0	0	0	0.35069	1	16651	16651		20.454	0	1	65852	+		18863	13120	12468	12592	25524	25524					0.003866690402333006
SFKVLKNKIM	10	Unmodified	_SFKVLKNKIM_					0	0	0		tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7685546875	2	604.365201	1206.71585	0.50748	0.0003067	0.20754	0.00012543	0.71502	0.00043213	604.8675542703937	60.407	0.095284	60.48	60.398	60.493	0.073421					4	2	2	0	0	0	0.31783	1	13347	13347		3.9444	0	1	39780			18864	13606	12469	12593	25525	25525					0.12076070490161328
SFLADPDCVF	10	Unmodified	_SFLADPDCVF_					0	0	0			REV__ENSG00000244405|ENST00000306376|ETV5	REV__ENSG00000244405|ENST00000306376|ETV5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.248779296875	2	557.2497	1112.48485	0.34303	0.00019116	-1.522	-0.00084812	-1.1789	-0.00065697	557.2486062944821	56.51	0.66932	56.51	56.162	56.831	0					53	24	3	0	0	0	0.33099	1	12334	12334		19.257	19.257	1	720550	+		18865	11070	12470	12594	25526	25526					-0.06689602282335727
SFLADPDCVF	10	Unmodified	_SFLADPDCVF_					0	0	0			REV__ENSG00000244405|ENST00000306376|ETV5	REV__ENSG00000244405|ENST00000306376|ETV5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2489013671875	2	557.2497	1112.48485	0.4466	0.00024887	-1.5999	-0.00089156	-1.1533	-0.00064269	557.2485671031718	56.457	0.70236	56.524	56.212	56.914	0.066448					61	25	4	0	0	0	0.33099	2	12137	12137;12184		19.257	2.1441	1	674690	+		18866	11070	12470	12594	25527;25528	25527					-0.06689602282335727
SFLDEHGLHS	10	Unmodified	_SFLDEHGLHS_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2664184570312	2	571.26727	1140.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.303	1	28.303	27.803	28.803	0								0	0	0	0.33738	1	3797	3797		3.2813	0.28607	1		+		18867	10350	12471	12595	25529	25529					-0.04465223430156584
SFLDGTPHSAF	11	Unmodified	_SFLDGTPHSAF_					0	0	0			REV__ENST00000581444.5_1_18:20889645-20956810:-|nuORF	REV__ENST00000581444.5_1_18:20889645-20956810:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7777099609375	2	589.77747	1177.54039	0.51289	0.00030249	0.33154	0.00019553	0.84443	0.00049802	589.7777656460398	57.619	0.58844	57.688	57.437	58.026	0.068375					42	21	3	0	0	0	0.39744	1	12485	12485		4.897	0	1	408430	+		18868	9179	12472	12596	25530	25530					-0.041280527703293046
SFLELYNTL	9	Unmodified	_SFLELYNTL_					0	0	0			REV__ENST00000441802.6_1_4:187532842-187532899:-|nuORF	REV__ENST00000441802.6_1_4:187532842-187532899:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8150024414062	2	550.28714	1098.55973	0.52733	0.00029018	-0.89382	-0.00049186	-0.36649	-0.00020167	550.2865991731082	47.245	0.70244	47.328	46.964	47.666	0.083096					35	27	2	0	0	0	0.24635	1	9435	9435		10.824	0	1	100020	+		18869	11889	12473	12597	25531	25531					0.01438903520556778
SFLEYRTF	8	Unmodified	_SFLEYRTF_					0	0	0		nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2659912109375	2	531.766374	1061.5182	0.60941	0.00032406	-0.50212	-0.00026701	0.10729	5.7052E-05	531.7661681811009	64.799	1.9365	64.799	63.972	65.909	0					156	69	4	0	0	0	0.53423	1	14670	14670		5.2307	0	1	943920			18870	792	12474	12598	25532	25532					-0.010102324481067626
SFLFVHPEW	9	Unmodified	_SFLFVHPEW_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2901000976562	2	581.290017	1160.56548	0.59268	0.00034452	-0.53429	-0.00031058	0.058392	3.3943E-05	581.2896866712052	74.914	0.4165	74.958	74.669	75.085	0.044037					25	14	2	0	0	0	0.03472	1	17739	17739		47.749	25.012	1	179440			18871	3404	12475	12599	25533	25533					-0.008379531770970061
SFLIAAGEIW	10	Unmodified	_SFLIAAGEIW_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2843017578125	2	553.797675	1105.5808	0.54796	0.00030346	-1.0076	-0.00055798	-0.4596	-0.00025452	553.7971399921169	75.438	0.29416	75.438	75.295	75.589	0					15	10	2	0	0	0	0.29844	1	18071	18071		22.736	1.1993	1	118110	+		18872	12748	12476	12600	25534	25534					0.03222913620084
SFLPSQTSDWF	11	Unmodified	_SFLPSQTSDWF_					0	0	0		ENSG00000187997|ENST00000340363|C17orf99	ENSG00000187997|ENST00000340363|C17orf99	ENSG00000187997|ENST00000340363|C17orf99	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.87139892578125	3	438.871549	1313.59282	0.54851	0.00024072	-0.05434	-2.3848E-05	0.49417	0.00021688	438.87148629360473	74.588	0.56085	74.588	74.4	74.961	0					48	20	3	0	0	0	0.35054	1	17783	17783		12.228	5.1905	1	447150			18873	5141	12477	12601	25535	25535					-0.05143514427390983
SFLPSQTSDWF	11	Unmodified	_SFLPSQTSDWF_					0	0	0		ENSG00000187997|ENST00000340363|C17orf99	ENSG00000187997|ENST00000340363|C17orf99	ENSG00000187997|ENST00000340363|C17orf99	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2062072753906	3	438.871549	1313.59282	0.27799	0.000122	0.16526	7.253E-05	0.44326	0.00019453	438.8715731575822	74.553	0.60413	74.602	74.424	75.028	0.048538					48	21	3	0	0	0	0.35054	2	17639	17639;17688		12.228	3.2513	1	361020			18874	5141	12477	12601	25536;25537	25536					-0.05143514427390983
SFLPTSPLLGF	11	Unmodified	_SFLPTSPLLGF_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.82666015625	2	589.826432	1177.63831	0.6122	0.00036109	0.065617	3.8703E-05	0.67781	0.00039979	589.8264162594709	99.146	0.40678	99.146	98.987	99.393	0					73	28	3	0	0	0	0.0097438	3	25299	25256;25260;25299		75.761	58.648	1	366310			18875	6393	12478	12602	25538;25539;25540	25540					0.056597558256498814
SFLPTSPLLGF	11	Unmodified	_SFLPTSPLLGF_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.826171875	2	589.826432	1177.63831	0.69527	0.00041009	0.034744	2.0493E-05	0.73002	0.00043058	589.8264073397713	99.137	0.48156	99.179	98.988	99.47	0.042839					75	34	3	0	0	0	0.074726	4	25125	25088;25125;25174;25199		51.63	41.556	1	379850			18876	6393	12478	12602	25541;25542;25543;25544	25542					0.056597558256498814
SFLRCFCLF	9	Unmodified	_SFLRCFCLF_					0	0	0			REV__nc|ENSG00000178950|O14976-2|GAK	REV__nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2753295898438	2	568.274998	1134.53544	0.19914	0.00011317	1.0302	0.00058545	1.2294	0.00069862	568.2754824026615	95.493	0.77271	95.532	95.264	96.036	0.038872					116	36	5	0	0	0	0.028398	2	24032	23988;24032		52.268	7.7313	1	14334000	+		18877	10465	12479	12603	25545;25546	25546					-0.026443514383117872
SFLRCFCLF	9	Unmodified	_SFLRCFCLF_					0	0	0			REV__nc|ENSG00000178950|O14976-2|GAK	REV__nc|ENSG00000178950|O14976-2|GAK	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	568.274998	1134.53544	0.18885	0.00010732	1.1505	0.00065382	1.3394	0.00076114	568.2755610652055	95.583	1.0909	95.583	95.253	96.343	0	0.025237	4.3891E-05	NaN	52.268	179	52	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17585000	+		18878	10465	12479	12603							-0.026443514383117872
SFLTFICTF	9	Unmodified	_SFLTFICTF_					0	0	0			REV__ENST00000588105.1_1_19:16222711-16223300:+|nuORF	REV__ENST00000588105.1_1_19:16222711-16223300:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7693481445312	2	539.767529	1077.5205	0.75479	0.00040741	1.841	0.00099372	2.5958	0.0014011	539.76943080567	81.964	1.0481	81.964	81.347	82.395	0					52	36	2	0	0	0	0.21398	2	20058	20058;20075		16.942	8.349	1	64963	+		18879	12569	12480	12604	25547;25548	25547					-0.015155200346498532
SFLWREPWL	9	Unmodified	_SFLWREPWL_					0	0	0		nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-2|SLC6A8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.5681457519531	3	411.885353	1232.63423	0.036336	1.4966E-05	1.6432	0.00067683	1.6796	0.0006918	412.2206505774128	49.825	0.24888	49.898	49.791	50.04	0.07312					12	8	2	0	0	0	0.25822	1	10134	10134		1.0715	0	1	29343			18880	7499	12481	12605	25549	25549					0.027217111226264024
SFLYCCDF	8	Unmodified	_SFLYCCDF_					0	0	0		nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8;ENSG00000123600|ENST00000375258|METTL8;ENST00000428182.2_1_12:15408356-15408710:-|nuORF;ENST00000438609.5_1_2:172180771-172195744:-|nuORF	nc|ENSG00000123600|Q9H825-2|METTL8	nc|ENSG00000123600|Q9H825-2|METTL8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.1933898925781	2	499.193339	996.372125	0.51297	0.00025607	-0.26747	-0.00013352	0.2455	0.00012255	499.1931468370395	93.459	0.73528	93.496	93.178	93.913	0.037369					42	30	2	0	0	0	0.54081	2	23364	23364;23409		0.79363	0	1	161700			18881	2226	12482	12606	25550;25551	25550					-0.12620574280015262
SFNIVRFTL	9	Unmodified	_SFNIVRFTL_					0	0	0			REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1	REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.28515625	2	548.811116	1095.60768	0.54875	0.00030116	0.55579	0.00030502	1.1045	0.00060618	548.8110071891398	69.019	0.41529	69.019	68.775	69.191	0					30	15	3	0	0	0	0.23671	1	16132	16132		18.721	3.883	1	276150	+		18882	8843	12483	12607	25552	25552					0.0637002223129457
SFNMEPALI	9	Unmodified	_SFNMEPALI_					0	0	0			REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.25634765625	2	511.254785	1020.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.52	1	71.578	71.078	72.078	0.058578								0	0	0	0.25992	1	16715	16715		7.2892	2.0586	1		+		18883	13230	12484	12608	25553	25553					-0.014409945570605487
SFPFALSVDL	10	Unmodified	_SFPFALSVDL_					0	0	0			REV__ENST00000327111.7_1_5:92919409-92919580:+|nuORF	REV__ENST00000327111.7_1_5:92919409-92919580:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.244384765625	2	548.289682	1094.56481	0.094693	5.1919E-05	1.7053	0.00093499	1.8	0.00098691	548.7920217976329	72.02	0.52271	72.02	71.858	72.381	0					31	17	2	0	0	0	0.29771	1	17060	17060		22.736	0	1	107780	+		18884	11411	12485	12609	25554	25554					0.02131207383195033
SFPLFEWR	8	Unmodified	_SFPLFEWR_					0	0	0			REV__ENST00000334690.10_1_4:184605139-184605184:+|nuORF	REV__ENST00000334690.10_1_4:184605139-184605184:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7774047851562	2	541.276909	1080.53927	-0.49286	-0.00026677	-0.12603	-6.8218E-05	-0.61889	-0.00033499	541.2767312667183	42.026	1.5275	42.026	41.8	43.327	0					120	52	4	0	0	0	0.53494	1	8219	8219		4.756	0	1	1004600	+		18885	11433	12486	12610	25555	25555					0.0022177765142714634
SFPYHCEL	8	Unmodified	_SFPYHCEL_					0	0	0		ENST00000607830.1_1_5:43033983-43034205:+|nuORF	ENST00000607830.1_1_5:43033983-43034205:+|nuORF	ENST00000607830.1_1_5:43033983-43034205:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.77178955078125	2	498.218203	994.421853	0.25927	0.00012918	0.36818	0.00018343	0.62745	0.00031261	498.218440727883	48.691	0.37525	48.691	48.483	48.858	0					17	12	2	0	0	0	0.3528	1	9931	9931		18.135	2.2878	1	51339			18886	7317	12487	12611	25556	25556					-0.07558123279704887
SFQPHAEAI	9	Unmodified	_SFQPHAEAI_					0	0	0			REV__nc|ENSG00000174672|Q8IWQ3-4|BRSK2	REV__nc|ENSG00000174672|Q8IWQ3-4|BRSK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7693176269531	2	500.248349	998.482145	0.45633	0.00022828	0.07856	3.93E-05	0.53489	0.00026758	500.24847438897217	63.808	0.83228	63.879	63.732	64.564	0.071014					42	28	3	0	0	0	0.24366	1	14502	14502		13.042	1.4022	1	375830	+		18887	12846	12488	12612	25557	25557					-0.017156896249616693
SFQVSRKMPE	10	Unmodified	_SFQVSRKMPE_					0	0	0		ENST00000531699.5_1_17:42786295-42807277:+|nuORF	ENST00000531699.5_1_17:42786295-42807277:+|nuORF	ENST00000531699.5_1_17:42786295-42807277:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5410461425781	3	403.541257	1207.60194	0.085112	3.4346E-05	0.38655	0.00015599	0.47166	0.00019033	403.5413601032779	30.879	0.58476	30.879	30.698	31.283	0					52	28	3	0	0	0	0.45794	1	4529	4529		1.5923	0.48253	1	52571			18888	7030	12489	12613	25558	25558					0.006445556572998612
SFQVSRKMPE	10	Unmodified	_SFQVSRKMPE_					0	0	0		ENST00000531699.5_1_17:42786295-42807277:+|nuORF	ENST00000531699.5_1_17:42786295-42807277:+|nuORF	ENST00000531699.5_1_17:42786295-42807277:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	403.541257	1207.60194	-0.2796	-0.00011283	0.53906	0.00021753	0.25946	0.0001047	403.54153734304424	30.855	0.42617	30.928	30.752	31.178	0.07378	0.024521	9.0587E-05	NaN	1.5923	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51504			18889	7030	12489	12613							0.006445556572998612
SFRNLRQTW	9	Unmodified	_SFRNLRQTW_					0	0	0			REV__ENST00000471771.5_1_13:28011305-28011362:-|nuORF	REV__ENST00000471771.5_1_13:28011305-28011362:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7683715820312	2	604.320171	1206.62579	0.63033	0.00038092	2.1524	0.0013007	2.7827	0.0016817	604.8238985222713	62.055	0.47854	62.128	61.972	62.451	0.073418					36	17	4	0	0	0	0.2418	1	13820	13820		13.906	4.5229	1	360980	+		18890	12033	12490	12614	25559	25559					0.030741572059923783
SFRPYFTWE	9	Unmodified	_SFRPYFTWE_					0	0	0			REV__nc|ENSG00000249481|Q496A3-2|SPATS1	REV__nc|ENSG00000249481|Q496A3-2|SPATS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.2916870117188	2	616.790381	1231.56621	-0.42332	-0.0002611	-0.3876	-0.00023907	-0.81091	-0.00050016	616.7900972766968	22.094	0.26674	22.196	22.075	22.342	0.10178					36	21	2	0	0	0	0.34704	1	1948	1948		0.52476	0.12405	1	35338	+		18891	11077	12491	12615	25560	25560					-0.040311585280505824
SFRQRPSL	8	Unmodified	_SFRQRPSL_					0	0	0		ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.75372314453125	2	495.777608	989.540663	0.19987	9.9093E-05	-0.10736	-5.3226E-05	0.092514	4.5866E-05	495.7775075760861	34.86	0.314	34.86	34.718	35.032	0					13	11	2	0	0	0	0.3576	1	5731	5731		5.7604	0	1	11614			18892	4542	12492	12616	25561	25561					0.045474117401681724
SFRRGPLH	8	Unmodified	_SFRRGPLH_					0	0	0			REV__ENST00000347739.3_1_8:22887146-22887185:-|nuORF	REV__ENST00000347739.3_1_8:22887146-22887185:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7402038574219	2	485.272493	968.530432	0.037165	1.8035E-05	-1.5384	-0.00074656	-1.5013	-0.00072852	485.2717042309958	50.318	0.42563	50.391	50.181	50.607	0.073124					19	14	2	0	0	0	0.3576	1	10336	10336		2.3027	0	1	56154	+		18893	11482	12493	12617	25562	25562					0.04490848805608039
SFRSVSPSVI	10	Unmodified	_SFRSVSPSVI_					0	0	0		nc|ENSG00000188848|Q6ZU67-3|BEND4	nc|ENSG00000188848|Q6ZU67-3|BEND4	nc|ENSG00000188848|Q6ZU67-3|BEND4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8290405273438	2	539.798206	1077.58186	0.22416	0.000121	-0.89854	-0.00048503	-0.67437	-0.00036403	539.798058622387	50.74	0.35523	50.74	50.567	50.922	0					30	11	3	0	0	0	0.31443	1	10525	10525		16.149	0	1	113850			18894	7580	12494	12618	25563	25563					0.0461712798901317
SFRSVSPSVI	10	Unmodified	_SFRSVSPSVI_					0	0	0		nc|ENSG00000188848|Q6ZU67-3|BEND4	nc|ENSG00000188848|Q6ZU67-3|BEND4	nc|ENSG00000188848|Q6ZU67-3|BEND4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8291625976562	2	539.798206	1077.58186	0.43026	0.00023225	-1.1019	-0.00059479	-0.67162	-0.00036254	539.798148230509	50.633	0.38818	50.706	50.551	50.939	0.07312					30	13	3	0	0	0	0.31443	1	10375	10375		16.149	0.90062	1	82772			18895	7580	12494	12618	25564	25564					0.0461712798901317
SFRTWCAPEE	10	Unmodified	_SFRTWCAPEE_					0	0	0			REV__ENST00000448759.1_1_1:43352960-43353698:-|nuORF	REV__ENST00000448759.1_1_1:43352960-43353698:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.18365478515625	3	409.181729	1224.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.47	1	76.51	76.01	77.01	0.03923								0	0	0	0.33892	1	18228	18228		1.7423	1.1154	1		+		18896	11914	12495	12619	25565	25565					-0.07992296647785224
SFSEYFGAI	9	Unmodified	_SFSEYFGAI_					0	0	0		nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN;nc|ENSG00000085274|Q9NPC7-4|MYNN;nc|ENSG00000085274|Q9NPC7-3|MYNN	nc|ENSG00000085274|Q9NPC7-2|MYNN	nc|ENSG00000085274|Q9NPC7-2|MYNN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7381591796875	2	510.737283	1019.46001	0.66848	0.00034142	0.76813	0.00039231	1.4366	0.00073373	510.7377054844175	66.793	1.2424	66.858	66.337	67.58	0.065063					76	45	2	0	0	0	0.25979	3	15216	15216;15269;15321		11.64	0.81637	1	258360			18897	955	12496	12620	25566;25567;25568	25566					-0.04893914093383955
SFSGPLLFYI	10	Unmodified	_SFSGPLLFYI_					0	0	0			REV__HERVH-int_dup4904|chr13:109269043-109269447:+|2.7681475886798586|0.2441911952543529|3.5|485.0|5|1|sense	REV__HERVH-int_dup4904|chr13:109269043-109269447:+|2.7681475886798586|0.2441911952543529|3.5|485.0|5|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.791015625	2	572.307875	1142.6012	0.7042	0.00040302	-0.38986	-0.00022312	0.31434	0.0001799	572.3074641814926	66.093	0.4785	66.093	65.909	66.387	0					21	16	2	0	0	0	0.31585	1	15291	15291		10.824	6.4947	1	188010	+		18898	12671	12497	12621	25569	25569					0.0356008427991128
SFSLRCISE	9	Unmodified	_SFSLRCISE_					0	0	0		TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2677001953125	2	521.255317	1040.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.328	1	40.328	39.828	40.828	0								0	0	0	0.19239	1	7391	7391		19.257	7.0163	1				18899	13750	12498	12622	25570	25570					-0.02254780188195582
SFSLRCISE	9	Unmodified	_SFSLRCISE_					0	0	0		TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2677001953125	2	521.255317	1040.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.468	1	40.468	39.968	40.968	0								0	0	0	0.24643	1	7433	7433		10.074	2.7847	1				18900	13750	12498	12622	25571	25571					-0.02254780188195582
SFSLRCISE	9	Unmodified	_SFSLRCISE_					0	0	0		TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2677612304688	2	521.255317	1040.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.248	1	40.338	39.838	40.838	0.089645								0	0	0	0.22786	1	7241	7241		13.906	3.0821	1				18901	13750	12498	12622	25572	25572					-0.02254780188195582
SFSLYGSATF	10	Unmodified	_SFSLYGSATF_					0	0	0			REV__nc|ENSG00000100427|Q15049-2|MLC1	REV__nc|ENSG00000100427|Q15049-2|MLC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.25634765625	2	540.25584	1078.49713	0.71822	0.00038802	0.14248	7.6974E-05	0.8607	0.000465	540.2558215559421	82.013	0.50303	82.013	81.81	82.313	0					31	17	3	0	0	0	0.27491	1	20075	20075		30.637	0	1	183300	+		18902	8396	12499	12623	25573	25573					-0.03898242547643349
SFSPKTYSF	9	Unmodified	_SFSPKTYSF_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2586669921875	2	532.258382	1062.50221	0.22666	0.00012064	0.23862	0.00012701	0.46528	0.00024765	532.2586154308281	50.313	0.7383	50.313	49.968	50.707	0					44	26	3	0	0	0	0.07372	1	10422	10422		38.176	2.0485	1	145810			18903	431	12500	12624	25574	25574					-0.026539386850117808
SFSPRTKEL	9	Unmodified	_SFSPRTKEL_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7902221679688	2	532.790381	1063.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.487	1	50.487	49.987	50.987	0								0	0	0	0.23955	1	10461	10461		11.495	0.6952	1		+		18904	10526	12501	12625	25575	25575					0.036968414719467546
SFSQKQNLI	9	Unmodified	_SFSQKQNLI_					0	0	0		nc|ENSG00000291239|Q3ZCX4-2|ZNF568;ENSG00000198453|ENST00000333987|ZNF568	nc|ENSG00000291239|Q3ZCX4-2|ZNF568	nc|ENSG00000291239|Q3ZCX4-2|ZNF568	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7907104492188	2	532.790381	1063.56621	0.27397	0.00014597	-0.064986	-3.4624E-05	0.20898	0.00011135	532.7904733160017	49.126	1.8928	49.203	48.78	50.673	0.076607					182	67	4	0	0	0	0.23216	1	10303	10303		14.838	0.93222	1	3126600			18905	5367	12502	12626	25576	25576					0.036968414719467546
SFSSFLPFNL	10	Unmodified	_SFSSFLPFNL_					0	0	0			REV__ENST00000594690.5_1_5:120685900-120686071:+|nuORF	REV__ENST00000594690.5_1_5:120685900-120686071:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3206176757812	2	579.795132	1157.57571	0.7549	0.00043769	-2.1592	-0.0012519	-1.4043	-0.00081421	580.2955310658544	84.897	0.26066	84.92	84.83	85.091	0.023132					16	9	2	0	0	0	0.31667	1	20770	20770		8.7454	2.0222	1	120090	+		18906	12603	12503	12627	25577	25577					0.0032260975747249176
SFSSLFFFL	9	Unmodified	_SFSSLFFFL_					0	0	0		ENST00000463586.1_1_1:171481117-171481318:+|nuORF	ENST00000463586.1_1_1:171481117-171481318:+|nuORF	ENST00000463586.1_1_1:171481117-171481318:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7706298828125	2	547.781493	1093.54843	0.36016	0.00019729	-2.3824	-0.001305	-2.0222	-0.0011077	547.7802541034515	96.096	0.35416	96.096	95.925	96.279	0					42	18	3	0	0	0	0.24365	2	24335	24335;24385		13.508	0	1	197770			18907	6624	12504	12628	25578;25579	25578					0.005401262170835253
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.26904296875	2	541.269281	1080.52401	0.015581	8.4336E-06	-0.23427	-0.0001268	-0.21868	-0.00011837	541.2691444318156	33.791	0.77588	33.791	33.601	34.377	0					77	29	5	0	0	0	0.072867	1	5416	5416		53.833	26.204	1	221510			18908	2705	12505	12629	25580	25580					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2691040039062	2	541.269281	1080.52401	0.13298	7.1976E-05	-0.14963	-8.0988E-05	-0.01665	-9.0121E-06	541.2690968039122	33.753	0.7299	33.828	33.633	34.363	0.074322					70	29	4	0	0	0	0.029171	1	5279	5279		70.332	44.933	1	215250			18909	2705	12505	12629	25581	25581					-0.01303133936426093
SFSYGYIRQ	9	Unmodified	_SFSYGYIRQ_					0	0	0			REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7658081054688	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.662	1	35.662	35.162	36.162	0								0	0	0	0.23884	1	5986	5986		11.64	0	1		+		18910	13209	12506	12630	25582	25582					-0.020077315621620073
SFSYGYIRQ	9	Unmodified	_SFSYGYIRQ_					0	0	0			REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7656860351562	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.85	1	40.85	40.35	41.35	0								0	0	0	0.25692	1	7548	7548		7.9102	1.187	1		+		18911	13209	12506	12630	25583	25583					-0.020077315621620073
SFSYGYIRQ	9	Unmodified	_SFSYGYIRQ_					0	0	0			REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7657470703125	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.043	1	41.043	40.543	41.543	0								0	0	0	0.21527	1	7606	7606		15.847	4.2069	1		+		18912	13209	12506	12630	25584	25584					-0.020077315621620073
SFTRQEFRAT	10	Unmodified	_SFTRQEFRAT_					0	0	0			REV__ENST00000589224.1_1_19:14034393-14038165:+|nuORF	REV__ENST00000589224.1_1_19:14034393-14038165:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3036499023438	2	621.814919	1241.61528	0.41816	0.00026002	3.3932	0.00211	3.8114	0.00237	621.8185822454836	80.059	3.4875	80.059	79.621	83.108	0					250	121	4	0	0	0	0.41688	1	20384	20384		10.074	0.72649	1	1056700	+		18913	9103	12507	12631	25585	25585					0.004141297609066896
SFTTQCEEL	9	Unmodified	_SFTTQCEEL_					0	0	0			REV__ENSG00000242120|ENST00000567252|MDFIC2	REV__ENSG00000242120|ENST00000567252|MDFIC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8079833984375	2	529.228965	1056.44338	0.39503	0.00020906	1.7584	0.00093061	2.1535	0.0011397	529.2298278903033	75.607	0.28757	75.607	75.425	75.713	0					14	11	2	0	0	0	0.29105	1	18141	18141		7.9102	0	1	328790	+		18914	11062	12508	12632	25586	25586					-0.08258783041651441
SFVDHRIL	8	Unmodified	_SFVDHRIL_					0	0	0			REV__nc|ENSG00000184634|Q93074-3|MED12	REV__nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7998352050781	2	493.774534	985.534515	0.32127	0.00015864	-2.2752	-0.0011234	-1.9539	-0.00096481	493.7735635255825	94.87	0.42776	94.908	94.766	95.193	0.038872					25	17	2	0	0	0	0.35759	1	23830	23830		14.838	3.198	1	71571	+		18915	10641	12509	12633	25587	25587					0.041168935086716374
SFVGWFLGWD	10	Unmodified	_SFVGWFLGWD_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14;nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.2872924804688	2	607.287474	1212.5604	0.44344	0.00026929	-2.1479	-0.0013044	-1.7045	-0.0010351	607.2865046948108	52.175	1.1253	52.175	51.91	53.036	0					49	39	2	0	0	0	0.45627	1	11219	11219		3.5965	0.60125	1	124380		+	18916	232	12510	12634	25588	25588					-0.037382570397085146
SFVGYGCY	8	Unmodified	_SFVGYGCY_					0	0	0		nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	nc|ENSG00000158786|Q9BZM2|PLA2G2F	nc|ENSG00000158786|Q9BZM2|PLA2G2F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	448.18609619140625	2	448.186371	894.35819	0.021911	9.82E-06	-0.1915	-8.5827E-05	-0.16959	-7.6007E-05	448.1862539704622	90.996	0.87518	91.031	90.709	91.585	0.035446					43	32	2	0	0	0	0.54081	1	22708	22708		0.79363	0	1	159890			18917	3705	12511	12635	25589	25589					-0.09321483716792045
SFVGYGCY	8	Unmodified	_SFVGYGCY_					0	0	0		nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	nc|ENSG00000158786|Q9BZM2|PLA2G2F	nc|ENSG00000158786|Q9BZM2|PLA2G2F	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	448.186371	894.35819	0.49471	0.00022172	-0.58773	-0.00026341	-0.093024	-4.1692E-05	448.1860724654543	91.126	0.67625	91.126	90.808	91.484	0	0.047434	-0.0002015	NaN	0.79363	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179690			18918	3705	12511	12635							-0.09321483716792045
SFVGYGCY	8	Unmodified	_SFVGYGCY_					0	0	0		nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	nc|ENSG00000158786|Q9BZM2|PLA2G2F	nc|ENSG00000158786|Q9BZM2|PLA2G2F	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	448.186371	894.35819	0.021911	9.82E-06	-0.1915	-8.5827E-05	-0.16959	-7.6007E-05	448.1862539704622	90.996	0.87518	91.031	90.709	91.585	0.035446	-0.047434	0.00015368	NaN	0.79363	43	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159890			18919	3705	12511	12635							-0.09321483716792045
SFVLGQILIF	10	Unmodified	_SFVLGQILIF_					0	0	0			REV__tr|U7T3C1|U7T3C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00579PE=4SV=1	REV__tr|U7T3C1|U7T3C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00579PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2757568359375	2	568.839342	1135.66413	0.17056	9.702E-05	-0.10642	-6.0534E-05	0.064141	3.6486E-05	568.8390577884419	95.378	0.21336	95.417	95.264	95.477	0.038872					12	8	2	0	0	0	0.31616	1	23988	23988		10.074	0	1	82258	+		18920	13277	12512	12636	25590	25590					0.10172650067943323
SFVPYTWNF	9	Unmodified	_SFVPYTWNF_					0	0	0		nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7744140625	2	580.7742	1159.53385	0.51154	0.00029709	-0.77579	-0.00045056	-0.26424	-0.00015347	580.7734527330971	88.501	0.36228	88.501	88.402	88.764	0					26	15	3	0	0	0	0.10543	1	22061	22061		31.268	13.122	1	131260			18921	2931	12513	12637	25591	25591					-0.03953945931061753
SFVPYTWNF	9	Unmodified	_SFVPYTWNF_					0	0	0		nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7737426757812	2	580.7742	1159.53385	0.56043	0.00032549	-0.58896	-0.00034205	-0.028524	-1.6566E-05	580.7737729416439	88.528	0.28648	88.558	88.46	88.747	0.030037					21	12	3	0	0	0	0.16392	1	21902	21902		22.736	11.912	1	100100			18922	2931	12513	12637	25592	25592					-0.03953945931061753
SFVRLQMDF	9	Unmodified	_SFVRLQMDF_					0	0	0		ENST00000502360.5_1_4:130017289-130023978:+|nuORF	ENST00000502360.5_1_4:130017289-130023978:+|nuORF	ENST00000502360.5_1_4:130017289-130023978:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7979736328125	2	571.786784	1141.55902	0.42236	0.0002415	-2.5791	-0.0014747	-2.1567	-0.0012332	571.7853728632691	64.511	0.071869	64.58	64.536	64.608	0.068916					4	2	2	0	0	0	0.25979	1	14599	14599		11.64	0.81637	1	41008			18923	6868	12514	12638	25593	25593					-0.006102144001260967
SFVSAGFASF	10	Unmodified	_SFVSAGFASF_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2340393066406	2	510.245275	1018.476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.022	1	42.112	41.612	42.612	0.089764								0	0	0	0.2369	1	7776	7776		25.399	2.663	1				18924	4882	12515	12639	25594	25594					-0.03250207856478937
SFWEACEE	8	Unmodified	_SFWEACEE_					0	0	0		ENST00000477143.5_1_16:319270-321397:-|nuORF;nc|ENSG00000076344|O94810-3|RGS11;nc|ENSG00000076344|O94810-2|RGS11;ENSG00000076344|ENST00000397770|RGS11	ENST00000477143.5_1_16:319270-321397:-|nuORF	ENST00000477143.5_1_16:319270-321397:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7239074707031	2	500.689475	999.364398	-0.096404	-4.8269E-05	-0.3584	-0.00017945	-0.45481	-0.00022772	500.6892178742831	32.236	0.58772	32.236	31.977	32.564	0					42	23	2	0	0	0	0.3576	1	4889	4889		5.2307	2.6532	1	42283			18925	840	12516	12640	25595	25595					-0.13531010275926292
SFWFALLTH	9	Unmodified	_SFWFALLTH_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8087768554688	2	561.292559	1120.57057	-0.3827	-0.0002148	-3.1074	-0.0017441	-3.4901	-0.0019589	561.2905048626601	42.471	0.29548	42.471	42.279	42.575	0					19	9	3	0	0	0	0.2446	1	8004	8004		11.64	0.81637	1	32846	+		18926	10231	12517	12641	25596	25596					0.01510350685521189
SFYFTDNPMV	10	Unmodified	_SFYFTDNPMV_					0	0	0			REV__ENSG00000154252|ENST00000192314|GAL3ST2	REV__ENSG00000154252|ENST00000192314|GAL3ST2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.8930358886719	3	407.514597	1219.52196	0.65569	0.0002672	0.86508	0.00035253	1.5208	0.00061974	407.514910727854	75.146	0.36838	75.146	75.011	75.38	0					20	13	2	0	0	0	0.44671	1	17962	17962		5.4027	2.4075	1	253860	+		18927	9708	12518	12642	25597	25597					-0.07901930736557006
SFYKRSLDND	10	Unmodified	_SFYKRSLDND_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7984619140625	2	622.798934	1243.58332	-0.18979	-0.0001182	0.71239	0.00044368	0.5226	0.00032547	622.7993074414907	35.611	1.0629	35.611	35.314	36.377	0					84	40	3	0	0	0	0.47263	1	6081	6081		1.1933	0.735	1	113940			18928	3540	12519	12643	25598	25598					-0.028732827129033467
SFYMWHKL	8	Unmodified	_SFYMWHKL_					0	0	0			REV__ENST00000519245.1_1_6:112457126-112460429:-|nuORF	REV__ENST00000519245.1_1_6:112457126-112460429:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2711181640625	2	556.273312	1110.53207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.053	1	30.053	29.553	30.553	0								0	0	0	0.38822	1	4313	4313		2.3027	1.1094	1		+		18929	12288	12520	12644	25599	25599					-0.01877278220649714
SFYPPATVHF	10	Unmodified	_SFYPPATVHF_					0	0	0			REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.28515625	2	583.287474	1164.5604	0.11893	6.9372E-05	-3.2581	-0.0019004	-3.1392	-0.001831	583.285512567563	39.753	0.32132	39.753	39.633	39.954	0					14	10	2	0	0	0	0.45794	1	7236	7236		3.2813	0.97858	1	51797	+		18930	12469	12521	12645	25600	25600					-0.01530257039735261
SFYTYMLR	8	Unmodified	_SFYTYMLR_					0	0	0		ENSG00000183310|ENST00000328782|OR2T34	ENSG00000183310|ENST00000328782|OR2T34	ENSG00000183310|ENST00000328782|OR2T34	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7841186523438	2	540.762778	1079.511	0.25236	0.00013647	1.4066	0.00076065	1.659	0.00089712	541.2644513742889	56.486	0.69912	56.486	56.217	56.916	0					53	25	3	0	0	0	0.49441	1	12293	12293		13.508	0	1	140520			18931	4916	12522	12646	25601	25601					-0.025572883201675722
SFYVSYGEL	9	Unmodified	_SFYVSYGEL_					0	0	0			REV__ENST00000504246.5_1_5:87971931-87972081:-|nuORF	REV__ENST00000504246.5_1_5:87971931-87972081:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3133544921875	2	532.75039	1063.48623	0.37209	0.00019823	-1.5353	-0.00081792	-1.1632	-0.00061969	532.7497284403181	79.339	0.52416	79.365	79.098	79.622	0.026428					31	18	2	0	0	0	0.17491	1	19103	19103		28.487	3.0875	1	165540	+		18932	12212	12523	12647	25602	25602					-0.042976449218940616
SFYYDHSHIC	10	Unmodified	_SFYYDHSHIC_					0	0	0			REV__ENST00000352580.7_2_2:87012879-87012951:-|nuORF	REV__ENST00000352580.7_2_2:87012879-87012951:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.57171630859375	3	424.509846	1270.50771	-0.096674	-4.1039E-05	0.92859	0.00039419	0.83191	0.00035316	424.84452796378446	45.755	0.3417	45.84	45.638	45.98	0.085617					18	13	2	0	0	0	0.31837	1	8940	8940		1.9064	0.83491	1	35702	+		18933	11489	12524	12648	25603	25603					-0.11672583164818207
SFYYNKSL	8	Unmodified	_SFYYNKSL_					0	0	0			REV__tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	REV__tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.254150390625	2	511.2531	1020.49165	0.39204	0.00020043	1.2582	0.00064328	1.6503	0.00084371	511.25397334389163	71.302	0.5047	71.302	71.109	71.614	0					35	17	3	0	0	0	0.53494	1	16867	16867		4.756	0	1	87965	+		18934	13127	12525	12649	25604	25604					-0.01777921339430577
SGAHTEPWTF	10	Unmodified	_SGAHTEPWTF_					0	0	0		nc|ENSG00000009765|Q6PHW0-7|IYD;nc|ENSG00000009765|Q6PHW0-3|IYD;nc|ENSG00000009765|Q6PHW0-6|IYD;nc|ENSG00000009765|Q6PHW0-5|IYD;ENSG00000009765|ENST00000344419|IYD;nc|ENSG00000009765|Q6PHW0-4|IYD	nc|ENSG00000009765|Q6PHW0-7|IYD	nc|ENSG00000009765|Q6PHW0-7|IYD	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7478637695312	2	566.756538	1131.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.299	1	82.321	81.821	82.821	0.021744								0	0	0	0.29565	1	20001	20001		18.146	1.0335	1				18935	405	12526	12650	25605	25605					-0.061966084588675585
SGCISKPF	8	Unmodified	_SGCISKPF_					0	0	0			REV__ENST00000561876.1_1_16:48671141-48672401:+|nuORF	REV__ENST00000561876.1_1_16:48671141-48672401:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.71014404296875	2	419.710014	837.405474	0.64703	0.00027157	0.41398	0.00017375	1.061	0.00044532	419.71002284542465	91.792	0.70998	91.792	91.584	92.294	0					38	26	2	0	0	0	0.46914	1	23044	23044		16.942	2.3606	1	256000	+		18936	12487	12527	12651	25606	25606					-0.019732044457896336
SGDPAEYNL	9	Unmodified	_SGDPAEYNL_					0	0	0		nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-6|LMNA	nc|ENSG00000160789|P02545-5|LMNA	nc|ENSG00000160789|P02545-5|LMNA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.74810791015625	2	483.214172	964.413791	-0.079019	-3.8183E-05	-0.4221	-0.00020396	-0.50111	-0.00024215	483.2139698068215	49.096	0.34075	49.096	48.973	49.314	0					19	11	2	0	0	0	0.18151	1	10026	10026		29.841	15.935	1	113340			18937	3778	12528	12652	25607	25607					-0.06983978995469897
SGDPAEYNL	9	Unmodified	_SGDPAEYNL_					0	0	0		nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-6|LMNA	nc|ENSG00000160789|P02545-5|LMNA	nc|ENSG00000160789|P02545-5|LMNA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7475891113281	2	483.214172	964.413791	-0.17531	-8.471E-05	-0.37431	-0.00018087	-0.54962	-0.00026558	483.21389994890797	48.994	0.42956	49.07	48.93	49.359	0.076607					21	15	2	0	0	0	0.18151	1	9870	9870		29.841	15.935	1	80288			18938	3778	12528	12652	25608	25608					-0.06983978995469897
SGDSPTPRTL	10	Unmodified	_SGDSPTPRTL_					0	0	0		ENST00000538502.5_2_1:109856041-109856413:-|nuORF	ENST00000538502.5_2_1:109856041-109856413:-|nuORF	ENST00000538502.5_2_1:109856041-109856413:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7633666992188	2	515.76182	1029.50909	0.61873	0.00031912	1.6638	0.00085813	2.2825	0.0011772	515.7626963800645	64.668	0.59618	64.668	64.436	65.032	0					33	21	2	0	0	0	0.27736	1	14802	14802		24.991	0.31707	1	255260			18939	7051	12529	12653	25609	25609					-0.004486258044153146
SGEVFAGLVL	10	Unmodified	_SGEVFAGLVL_					0	0	0			REV__nc|ENSG00000160339|Q15485-2|FCN2	REV__nc|ENSG00000160339|Q15485-2|FCN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2767639160156	2	496.276575	990.538597	0.9209	0.00045702	-0.36753	-0.0001824	0.55336	0.00027462	496.27625958119535	80.145	0.64618	80.145	79.897	80.543	0					46	21	3	0	0	0	0.22666	1	19534	19534		30.637	3.0077	1	491390	+		18940	9848	12530	12654	25610	25610					0.04294938211717181
SGEVFAGLVL	10	Unmodified	_SGEVFAGLVL_					0	0	0			REV__nc|ENSG00000160339|Q15485-2|FCN2	REV__nc|ENSG00000160339|Q15485-2|FCN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.27642822265625	2	496.276575	990.538597	0.63691	0.00031609	-0.15858	-7.8702E-05	0.47833	0.00023738	496.2763375527951	80.036	0.57973	80.062	79.884	80.464	0.026436					48	20	3	0	0	0	0.28643	1	19301	19301		24.021	2.4836	1	258910	+		18941	9848	12530	12654	25611	25611					0.04294938211717181
SGFFVFSRLEV	11	Unmodified	_SGFFVFSRLEV_					0	0	0		nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE	nc|ENSG00000211891|P01854-1|IGHE	nc|ENSG00000211891|P01854-1|IGHE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.7669677734375	2	644.340238	1286.66592	0.34772	0.00022405	-1.0306	-0.00066403	-0.68284	-0.00043998	644.8404626056471	75.63	0.33321	75.63	75.38	75.713	0					23	13	3	0	0	0	0.30979	1	18098	18098		11.495	1.4208	1	508110			18942	7600	12531	12655	25612	25612					0.03405659085910884
SGFLELSGLQ	10	Unmodified	_SGFLELSGLQ_					0	0	0		ACAN|p.D1983E|1|0.43|ENSG00000157766|chr15:88858534-88858534|C/A|missense_variant	ACAN|p.D1983E|1|0.43|ENSG00000157766|chr15:88858534-88858534|C/A|missense_variant	ACAN|p.D1983E|1|0.43|ENSG00000157766|chr15:88858534-88858534|C/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7586669921875	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.278	1	64.349	63.849	64.849	0.071014								0	0	0	0.33215	1	14521	14521		9.3831	2.0939	1				18943	5	12532	12656	25613	25613					0.016537328607682866
SGFSSVSVSR	10	Unmodified	_SGFSSVSVSR_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.756591796875	2	506.756538	1011.49852	0.10266	5.2023E-05	0.2386	0.00012091	0.34126	0.00017294	506.7565011587678	36.195	0.56436	36.195	36.047	36.611	0					42	21	3	0	0	0	0.29071	1	6144	6144		28.234	13.828	1	122820		+	18944	215	12533	12657	25614	25614					-0.006766084588434751
SGFSSVSVSR	10	Unmodified	_SGFSSVSVSR_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7567138671875	2	506.756538	1011.49852	0.15031	7.617E-05	0.047828	2.4237E-05	0.19814	0.00010041	506.75646181019664	36.153	0.58523	36.235	36.049	36.634	0.081715					41	23	3	0	0	0	0.21799	1	5994	5994		31.636	14.193	1	96794		+	18945	215	12533	12657	25615	25615					-0.006766084588434751
SGFTAMTEKF	10	Unmodified	_SGFTAMTEKF_					0	0	0		ENSG00000143199|ENST00000367851|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2733764648438	2	559.762975	1117.5114	0.57146	0.00031988	-4.4504	-0.0024912	-3.879	-0.0021713	559.7604611502686	70.776	0.2406	70.776	70.647	70.888	0					12	8	2	0	0	0	0.31532	1	16659	16659		13.042	1.4022	1	87272			18946	3139	12534	12658	25616	25616					-0.04265913390986498
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.74609375	1	608.2093	607.202024	-0.0054058	-3.2878E-06	-2.5603	-0.0015572	-2.5657	-0.0015605	608.2104298756836	26.887	0.24892	26.887	26.778	27.027	0					26	17	2	0	0	0	0.26021	1	3372	3372		0	0	1	11552	+		18947	9743	12535	12659	25617	25617					-0.11728929167406932
SGGGKRALAP	10	Unmodified	_SGGGKRALAP_					0	0	0		ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant;ENSG00000101493|ENST00000443185|ZNF516	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2640075683594	2	457.264333	912.514114	0.29326	0.0001341	-0.11554	-5.2832E-05	0.17772	8.1263E-05	457.2641702864376	76.289	2.8255	76.328	76.001	78.827	0.03923					199	113	3	0	0	0	0.45794	1	18884	18884		3.2813	0.97858	1	1082900			18948	1263	12536	12660	25618	25618					0.05435722848835667
SGHAALVR	8	Unmodified	_SGHAALVR_					0	0	0			REV__ENSG00000128271|ENST00000337539|ADORA2A	REV__ENSG00000128271|ENST00000337539|ADORA2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.7325134277344	2	405.732669	809.450785	-0.12725	-5.1628E-05	0.14674	5.9538E-05	0.019495	7.9098E-06	405.73261871842715	21.347	0.8462	21.448	21.301	22.148	0.10178					156	88	3	0	0	0	0.46914	1	1762	1762		16.942	4.4107	1	215870	+		18949	9012	12537	12661	25619	25619					0.038437821316165355
SGHGGHHH	8	Unmodified	_SGHGGHHH_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.1934509277344	2	413.178592	824.342632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.562	1	73.614	73.114	74.114	0.052574								0	0	0	0.38822	1	17339	17339		2.5775	0	1		+		18950	7716	12538	12662	25620	25620					-0.07656589398970937
SGIFLTFLSL	10	Unmodified	_SGIFLTFLSL_					0	0	0		tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3048706054688	2	549.3157	1096.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.44	1	102.48	101.98	102.98	0.040916								0	0	0	0.33487	1	26123	26123		6.2058	0	1				18951	13738	12539	12663	25621	25621					0.07240370796944262
SGIITAFV	8	Unmodified	_SGIITAFV_					0	0	0		ENST00000583447.5_1_17:37219733-37228839:+|nuORF	ENST00000583447.5_1_17:37219733-37228839:+|nuORF	ENST00000583447.5_1_17:37219733-37228839:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.23309326171875	2	404.234179	806.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.934	1	85.934	85.434	86.434	0								0	0	0	0.38822	1	21269	21269		2.3027	0	1				18952	7229	12540	12664	25622	25622					0.04283612465758324
SGLGYCFSF	9	Unmodified	_SGLGYCFSF_					0	0	0		ENSG00000108932|ENST00000580666|SLC16A6	ENSG00000108932|ENST00000580666|SLC16A6	ENSG00000108932|ENST00000580666|SLC16A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.71356201171875	2	490.712753	979.410954	0.49088	0.00024088	2.0796	0.0010205	2.5705	0.0012614	490.7137142088468	87.93	0.66615	87.93	87.736	88.402	0					30	23	2	0	0	0	0.3182	1	21884	21884		4.3292	1.7518	1	387790			18953	1614	12541	12665	25623	25623					-0.07957525653966968
SGLGYCFSF	9	Unmodified	_SGLGYCFSF_					0	0	0		ENSG00000108932|ENST00000580666|SLC16A6	ENSG00000108932|ENST00000580666|SLC16A6	ENSG00000108932|ENST00000580666|SLC16A6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	490.712753	979.410954	0.49088	0.00024088	2.0796	0.0010205	2.5705	0.0012614	490.7137142088468	87.93	0.66615	87.93	87.736	88.402	0	-0.039936	-6.4775E-05	NaN	4.3292	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387790			18954	1614	12541	12665							-0.07957525653966968
SGLGYCFSF	9	Unmodified	_SGLGYCFSF_					0	0	0		ENSG00000108932|ENST00000580666|SLC16A6	ENSG00000108932|ENST00000580666|SLC16A6	ENSG00000108932|ENST00000580666|SLC16A6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	490.712753	979.410954	0.25892	0.00012705	2.1711	0.0010654	2.43	0.0011924	490.71376618799127	87.98	0.64436	88.01	87.767	88.411	0.030037	0.039936	2.494E-05	NaN	4.3292	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342380			18955	1614	12541	12665							-0.07957525653966968
SGLIGYILLL	10	Unmodified	_SGLIGYILLL_					0	0	0		tr|U7SSH2|U7SSH2_FUSNULIVCSfamilybranched-chainaminoacid:cationtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01450PE=3SV=1	tr|U7SSH2|U7SSH2_FUSNULIVCSfamilybranched-chainaminoacid:cationtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01450PE=3SV=1	tr|U7SSH2|U7SSH2_FUSNULIVCSfamilybranched-chainaminoacid:cationtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01450PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3339233398438	2	531.333893	1060.65323	0.48315	0.00025672	0.278	0.00014771	0.76115	0.00040443	531.3339520852451	99.744	1.0671	99.744	99.485	100.55	0					90	58	2	0	0	0	0.28643	1	25595	25595		24.021	3.5669	1	830620			18956	13554	12542	12666	25624	25624					0.12533247693681915
SGLLERKH	8	Unmodified	_SGLLERKH_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2720642089844	2	470.272158	938.529764	-0.025232	-1.1866E-05	0.044872	2.1102E-05	0.019641	9.2365E-06	470.2720263132973	86.952	0.69166	86.952	86.683	87.374	0					71	29	3	0	0	0	0.53494	1	21632	21632		4.756	0	1	1325400	+		18957	9150	12543	12667	25625	25625					0.05804009365908769
SGLLTKPSRS	10	Unmodified	_SGLLTKPSRS_					0	0	0			REV__ENST00000511744.1_1_6:53976250-54068425:+|nuORF	REV__ENST00000511744.1_1_6:53976250-54068425:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3038940429688	2	523.303655	1044.59276	0.50452	0.00026402	-0.077575	-4.0595E-05	0.42695	0.00022342	523.3035016016728	82.868	2.4206	82.868	81.98	84.401	0					302	93	5	0	0	0	0.42901	1	20520	20520		8.7454	0	1	3364900	+		18958	12257	12544	12668	25626	25626					0.07224530363282611
SGPDPHLPL	9	Unmodified	_SGPDPHLPL_					0	0	0			REV__ENST00000567040.5_1_16:30094959-30095061:+|nuORF	REV__ENST00000567040.5_1_16:30094959-30095061:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.7449035644531	2	466.745442	931.476331	-0.24245	-0.00011316	0.218	0.00010175	-0.024452	-1.1413E-05	466.7454869702616	43.325	1.2873	43.415	43.162	44.45	0.089764					104	45	4	0	0	0	0.16036	1	8234	8234		23.148	0	1	1744700	+		18959	12508	12545	12669	25627	25627					0.00785211863387758
SGPYEWDFD	9	Unmodified	_SGPYEWDFD_					0	0	0			REV__nc|ENSG00000134216|Q9BZP6-2|CHIA	REV__nc|ENSG00000134216|Q9BZP6-2|CHIA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.298095703125	2	558.219454	1114.42436	0.62537	0.00034909	0.88237	0.00049255	1.5077	0.00084165	558.2193763013473	70.081	0.2536	70.142	69.94	70.194	0.060562					13	11	2	0	0	0	0.25281	1	16259	16259		6.7232	0	1	102060	+		18960	9166	12546	12670	25628	25628					-0.12827996341025028
SGQERYWT	8	Unmodified	_SGQERYWT_					0	0	0		ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENST00000471919.1_1_6:116981518-116989864:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.736328125	2	513.735606	1025.45666	-0.2896	-0.00014878	0.21323	0.00010954	-0.076367	-3.9232E-05	513.7357111263856	19.6	0.23551	19.6	19.5	19.735	0					35	27	2	0	0	0	0.54097	1	1394	1394		0.69038	0	1	16630			18961	6679	12547	12671	25629	25629					-0.05505164147393771
SGQERYWT	8	Unmodified	_SGQERYWT_					0	0	0		ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENST00000471919.1_1_6:116981518-116989864:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.73583984375	2	513.735606	1025.45666	0.15492	7.9587E-05	-0.21849	-0.00011225	-0.063573	-3.2659E-05	513.7355011162139	19.5	0.18198	19.595	19.534	19.716	0.095234					32	21	2	0	0	0	0.53817	1	1294	1294		2.5775	0	1	18354			18962	6679	12547	12671	25630	25630					-0.05505164147393771
SGRLLYPF	8	Unmodified	_SGRLLYPF_					0	0	0			REV__nc|ENSG00000135541|Q8N157-2|AHI1	REV__nc|ENSG00000135541|Q8N157-2|AHI1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.7764587402344	2	476.766178	951.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.429	1	49.429	48.929	49.929	0								0	0	0	0.38822	1	10139	10139		2.8892	0	1		+		18963	9210	12548	12672	25631	25631					0.040103926226947806
SGRRAAGMVL	10	Unmodified	_SGRRAAGMVL_					0	0	0		ENST00000307450.10_1_10:99377052-99379376:-|nuORF	ENST00000307450.10_1_10:99377052-99379376:-|nuORF	ENST00000307450.10_1_10:99377052-99379376:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7767028808594	2	509.284743	1016.55493	0.327	0.00016654	-0.70192	-0.00035748	-0.37491	-0.00019094	509.2842746571201	76.183	0.9579	76.183	75.937	76.895	0					119	46	3	0	0	0	0.43771	1	18515	18515		7.1017	2.3457	1	3436600			18964	5988	12549	12673	25632	25632					0.04731740896829706
SGRSKLGPLS	10	Unmodified	_SGRSKLGPLS_					0	0	0			REV__nc|ENSG00000169221|Q4KMP7-2|TBC1D10B	REV__nc|ENSG00000169221|Q4KMP7-2|TBC1D10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2908630371094	2	501.290548	1000.56654	0.77457	0.00038829	-0.082864	-4.1539E-05	0.69171	0.00034675	501.2904008193115	80.898	3.0648	80.898	79.958	83.023	0					366	106	4	0	0	0	0.44496	1	19514	19514		5.7319	1.4026	1	2422800	+		18965	10165	12550	12674	25633	25633					0.06628261191792717
SGRWFLAGLV	10	Unmodified	_SGRWFLAGLV_					0	0	0		ENSG00000187045|ENST00000676104|TMPRSS6;nc|ENSG00000187045|Q8IU80|TMPRSS6;nc|ENSG00000187045|Q8IU80-5|TMPRSS6	ENSG00000187045|ENST00000676104|TMPRSS6	ENSG00000187045|ENST00000676104|TMPRSS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.830322265625	2	553.311284	1104.60801	0.7657	0.00042367	-0.80223	-0.00044388	-0.036523	-2.0209E-05	553.3107453189963	85.642	0.59328	85.667	85.441	86.035	0.025177					50	22	3	0	0	0	0.30966	1	21046	21046		21.537	1.1224	1	366070			18966	5106	12551	12675	25634	25634					0.059894419511238084
SGSDFSRTFDG	11	Unmodified	_SGSDFSRTFDG_					0	0	0			REV__nc|ENSG00000117595|O14896-2|IRF6	REV__nc|ENSG00000117595|O14896-2|IRF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.2506713867188	2	588.251817	1174.48908	0.83736	0.00049258	-1.9153	-0.0011267	-1.078	-0.00063413	588.2504921059968	92.698	0.44987	92.734	92.552	93.002	0.03653					24	15	3	0	0	0	0.40891	1	23153	23153		2.2828	0.63015	1	197210	+		18967	8830	12552	12676	25635	25635					-0.09118421535026755
SGVASYFIFL	10	Unmodified	_SGVASYFIFL_					0	0	0		nc|ENSG00000188869|Q7Z5M5-2|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant;ENSG00000188869|ENST00000359440|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2926635742188	2	552.292225	1102.5699	0.73777	0.00040747	0.42717	0.00023592	1.1649	0.00064339	552.29237303936	97.662	1.1307	97.703	97.138	98.269	0.040855					102	56	3	0	0	0	0.38104	1	24623	24623		13.906	0	1	755560			18968	5177	12553	12677	25636	25636					0.022715112457944997
SGVLYSCQHRA	11	Unmodified	_SGVLYSCQHRA_					0	0	0			REV__ENSG00000130766|ENST00000253063|SESN2	REV__ENSG00000130766|ENST00000253063|SESN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.3162231445312	2	610.795672	1219.57679	0.72892	0.00044522	-3.9147	-0.0023911	-3.1858	-0.0019459	610.7925831487593	66.793	0.26904	66.858	66.773	67.042	0.065063					10	8	2	0	0	0	0.30908	1	15294	15294		16.149	6.0752	1	65089	+		18969	9067	12554	12678	25637	25637					-0.024214991452709
SGVPWASRP	9	Unmodified	_SGVPWASRP_					0	0	0		ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.28436279296875	2	478.751059	955.487565	-0.1944	-9.3068E-05	-1.049	-0.00050222	-1.2434	-0.00059529	478.7504702406046	48.932	0.31598	49.009	48.9	49.216	0.076603					15	11	2	0	0	0	0.24791	1	9893	9893		10.074	2.1638	1	47192			18970	5486	12555	12679	25638	25638					0.008040339575131839
SGVYEPFVTI	10	Unmodified	_SGVYEPFVTI_					0	0	0			REV__HSPA13|p.S143F|1|0.09|ENSG00000155304|chr21:14378351-14378351|G/A|missense_variant	REV__HSPA13|p.S143F|1|0.09|ENSG00000155304|chr21:14378351-14378351|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2849731445312	2	556.28714	1110.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.896	1	65.963	65.463	66.463	0.066872								0	0	0	0.28665	1	15013	15013		19.257	11.347	1		+		18971	12681	12556	12680	25639	25639					0.008869035205634646
SGVYGKFQVE	10	Unmodified	_SGVYGKFQVE_					0	0	0		tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2679443359375	2	557.282389	1112.55022	0.95375	0.00053151	-1.174	-0.00065428	-0.22029	-0.00012277	557.2816243435208	80.798	0.41024	80.798	80.646	81.056	0					28	13	3	0	0	0	0.42335	1	19769	19769		9.3831	0	1	183300			18972	13720	12557	12681	25640	25640					-0.001548647649542545
SHALGAKK	8	Unmodified	_SHALGAKK_					0	0	0			REV__ENSG00000182768|ENST00000379095|NGRN	REV__ENSG00000182768|ENST00000379095|NGRN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2428894042969	2	406.24287	810.471186	0.16484	6.6966E-05	-0.0088494	-3.595E-06	0.15599	6.3371E-05	406.24280289395784	33.583	0.60498	33.583	33.404	34.009	0					42	21	3	0	0	0	0.52502	1	5370	5370		9.3474	0	1	73113	+		18973	10575	12558	12682	25641	25641					0.058369527914123864
SHALIKSLF	9	Unmodified	_SHALIKSLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7298889160156	2	508.300384	1014.58622	0.14755	7.5E-05	-1.0642	-0.00054094	-0.91666	-0.00046594	508.2996244888881	49.866	0.66898	49.866	49.679	50.348	0					49	23	3	0	0	0	0.10323	1	10273	10273		47.732	27.317	1	248480			18974	2405	12559	12683	25642	25642					0.07950637202566213
SHALIKSLF	9	Unmodified	_SHALIKSLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2877197265625	2	508.300384	1014.58622	0.18511	9.4092E-05	-0.99604	-0.00050629	-0.81093	-0.00041219	508.29976198947713	49.815	0.58236	49.888	49.655	50.237	0.07312					40	20	3	0	0	0	0.18398	1	10087	10087		20.415	9.5906	1	185840			18975	2405	12559	12683	25643	25643					0.07950637202566213
SHALLLSWS	9	Unmodified	_SHALLLSWS_					0	0	0			REV__ENST00000265395.6_1_7:27565748-27565832:-|nuORF	REV__ENST00000265395.6_1_7:27565748-27565832:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.28778076171875	2	507.274367	1012.53418	0.13582	6.8898E-05	-1.3393	-0.00067938	-1.2035	-0.00061048	508.2753406559911	49.784	0.20237	49.784	49.733	49.935	0					12	6	3	0	0	0	0.26684	1	10257	10257		10.824	1.4765	1	48864	+		18976	11261	12560	12684	25644	25644					0.028414737887942465
SHATPPPL	8	Unmodified	_SHATPPPL_					0	0	0			REV__ENST00000499203.6_1_5:139487027-139487156:-|nuORF	REV__ENST00000499203.6_1_5:139487027-139487156:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.220458984375	2	410.221603	818.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.234	1	58.234	57.734	58.734	0								0	0	0	0.38822	1	12824	12824		0.79363	0	1		+		18977	12198	12561	12685	25645	25645					0.012175576631761942
SHDPHSRF	8	Unmodified	_SHDPHSRF_					0	0	0			REV__ENST00000394318.7_1_17:37224095-37235479:-|nuORF	REV__ENST00000394318.7_1_17:37224095-37235479:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.72760009765625	2	491.728115	981.441677	0.095916	4.7165E-05	-0.98783	-0.00048574	-0.89191	-0.00043858	491.72747156950015	35.087	0.29246	35.087	34.912	35.205	0					16	9	2	0	0	0	0.53858	1	5834	5834		2.3027	0.24298	1	20416	+		18978	9865	12562	12686	25646	25646					-0.049786112247147685
SHETEKPL	8	Unmodified	_SHETEKPL_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.74029541015625	2	470.740357	939.46616	-0.12669	-5.964E-05	0.25345	0.00011931	0.12675	5.9667E-05	470.7403672462601	39.405	1.207	39.405	39.134	40.341	0					105	43	4	0	0	0	0.53494	1	7316	7316		4.756	4.756	1	831310	+		18979	10057	12563	12687	25647	25647					-0.005993958618546458
SHFLFQMNFS	10	Unmodified	_SHFLFQMNFS_					0	0	0			REV__nc|ENSG00000197472|Q8IW36-3|ZNF695	REV__nc|ENSG00000197472|Q8IW36-3|ZNF695	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.2906494140625	2	629.289691	1256.56483	0.087629	5.5144E-05	0.17402	0.00010951	0.26164	0.00016465	629.2897735827013	34.476	0.26511	34.552	34.41	34.675	0.076244					16	11	2	0	0	0	0.47119	1	5502	5502		0	0	1	38336	+		18980	10859	12564	12688	25648	25648					-0.053191158884601464
SHFLFQMNFS	10	Unmodified	_SHFLFQMNFS_					0	0	0			REV__nc|ENSG00000197472|Q8IW36-3|ZNF695	REV__nc|ENSG00000197472|Q8IW36-3|ZNF695	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	629.289691	1256.56483	-0.12194	-7.6733E-05	0.15653	9.8501E-05	0.034592	2.1768E-05	629.2897611143072	34.545	0.28088	34.545	34.395	34.676	0	-0.0039241	-1.2157E-05	NaN	0	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26222	+		18981	10859	12564	12688							-0.053191158884601464
SHFLFQMNFS	10	Unmodified	_SHFLFQMNFS_					0	0	0			REV__nc|ENSG00000197472|Q8IW36-3|ZNF695	REV__nc|ENSG00000197472|Q8IW36-3|ZNF695	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	629.289691	1256.56483	0.087629	5.5144E-05	0.17402	0.00010951	0.26164	0.00016465	629.2897735827013	34.476	0.26511	34.552	34.41	34.675	0.076244	0.0039241	9.853E-06	NaN	0	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38336	+		18982	10859	12564	12688							-0.053191158884601464
SHGTGQCCHDR	11	Unmodified	_SHGTGQCCHDR_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	400.3492736816406	3	400.825951	1199.45602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.428	1	22.428	21.928	22.928	0								0	0	0	0.34125	1	2128	2128		0.08335	0	1		+		18983	10602	12565	12689	25649	25649					-0.13572650130413422
SHHECKWW	8	Unmodified	_SHHECKWW_					0	0	0			REV__ENSG00000054219|ENST00000263636|LY75	REV__ENSG00000054219|ENST00000263636|LY75	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7410278320312	2	556.740168	1111.46578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.318	1	30.318	29.818	30.818	0								0	0	0	0.38822	1	4392	4392		0.69038	0	1		+		18984	8062	12566	12690	25650	25650					-0.08549094062709628
SHLPGEEH	8	Unmodified	_SHLPGEEH_					0	0	0		ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.20892333984375	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.531	1	87.531	87.031	88.031	0								0	0	0	0.38822	1	21758	21758		2.5775	0	1				18985	7096	12567	12691	25651	25651					-0.05213122210193433
SHLPGEEH	8	Unmodified	_SHLPGEEH_					0	0	0		ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.20977783203125	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.283	1	91.283	90.783	91.783	0								0	0	0	0.38822	1	22894	22894		2.5775	0	1				18986	7096	12567	12691	25652	25652					-0.05213122210193433
SHLPGEEH	8	Unmodified	_SHLPGEEH_					0	0	0		ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2096252441406	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.69	1	105.69	105.19	106.19	0								0	0	0	0.38822	1	27231	27231		2.5775	0	1				18987	7096	12567	12691	25653	25653					-0.05213122210193433
SHLPGEEH	8	Unmodified	_SHLPGEEH_					0	0	0		ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.20916748046875	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.179	1	87.207	86.707	87.707	0.027573								0	0	0	0.38822	1	21489	21489		0.69038	0	1				18988	7096	12567	12691	25654	25654					-0.05213122210193433
SHLPGEEH	8	Unmodified	_SHLPGEEH_					0	0	0		ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2091369628906	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.203	1	96.243	95.743	96.743	0.039772								0	0	0	0.38822	1	24234	24234		2.5775	0	1				18989	7096	12567	12691	25655	25655					-0.05213122210193433
SHLPGEEH	8	Unmodified	_SHLPGEEH_					0	0	0		ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2098388671875	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.24	1	100.28	99.782	100.78	0.042839								0	0	0	0.38822	1	25464	25464		2.5775	0	1				18990	7096	12567	12691	25656	25656					-0.05213122210193433
SHLPGEEH	8	Unmodified	_SHLPGEEH_					0	0	0		ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2093811035156	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.45	1	100.49	99.992	100.99	0.042839								0	0	0	0.38822	1	25528	25528		2.5775	0	1				18991	7096	12567	12691	25657	25657					-0.05213122210193433
SHLPGEEH	8	Unmodified	_SHLPGEEH_					0	0	0		ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	ENST00000550168.5_1_12:49209469-49210697:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2095031738281	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.21	1	101.25	100.75	101.75	0.042656								0	0	0	0.38822	1	25758	25758		0.69038	0	1				18992	7096	12567	12691	25658	25658					-0.05213122210193433
SHLVDYFPEF	10	Unmodified	_SHLVDYFPEF_					0	0	0		ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000088256|ENST00000078429|GNA11	ENST00000590534.1_1_19:3119101-3121174:+|nuORF	ENST00000590534.1_1_19:3119101-3121174:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2978515625	2	627.295496	1252.57644	-0.0025089	-1.5738E-06	0.27771	0.0001742	0.2752	0.00017263	627.2956227259544	71.77	1.5491	71.77	71.36	72.909	0					123	54	3	0	0	0	0.42335	1	17177	17177		9.3831	0.63772	1	1679400			18993	1008	12568	12692	25659	25659					-0.03974595593490449
SHLYTSPLDM	10	Unmodified	_SHLYTSPLDM_					0	0	0		ENST00000261254.7_1_12:4410147-4410483:+|nuORF	ENST00000261254.7_1_12:4410147-4410483:+|nuORF	ENST00000261254.7_1_12:4410147-4410483:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.77490234375	2	582.273706	1162.53286	0.38551	0.00022447	-2.1073	-0.001227	-1.7218	-0.0010026	582.2728875150941	102.77	0.60096	102.77	102.63	103.23	0					82	40	3	0	0	0	0.46746	1	26476	26476		1.4819	0.15237	1	106610			18994	5863	12569	12693	25660	25660					-0.04190528362278201
SHPVSGTPM	9	Unmodified	_SHPVSGTPM_					0	0	0			REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4	REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.71563720703125	2	456.715827	911.417102	-0.20616	-9.4155E-05	0.64352	0.0002939	0.43736	0.00019975	456.71594023965844	28.625	0.27298	28.707	28.599	28.872	0.082132					22	14	2	0	0	0	0.29576	1	3780	3780		7.2892	0	1	32157	+		18995	10714	12570	12694	25661	25661					-0.042150074224423406
SHPVSGTPM	9	Unmodified	_SHPVSGTPM_					0	0	0			REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4	REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	456.715827	911.417102	-0.026949	-1.2308E-05	-0.068119	-3.1111E-05	-0.095069	-4.3419E-05	456.71570004934824	28.701	0.31619	28.701	28.584	28.9	0	-0.0028787	-0.00020425	NaN	7.2892	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26960	+		18996	10714	12570	12694							-0.042150074224423406
SHPVSGTPM	9	Unmodified	_SHPVSGTPM_					0	0	0			REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4	REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	456.715827	911.417102	-0.20616	-9.4155E-05	0.64352	0.0002939	0.43736	0.00019975	456.71594023965844	28.625	0.27298	28.707	28.599	28.872	0.082132	0.0028787	0.00044579	NaN	7.2892	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32157	+		18997	10714	12570	12694							-0.042150074224423406
SHQLCQDLPPC	11	Unmodified	_SHQLCQDLPPC_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.276123046875	2	620.77609	1239.53763	0.0032339	2.0075E-06	0.26124	0.00016217	0.26447	0.00016418	620.7764681119306	106.92	0.38797	106.94	106.83	107.22	0.025711					94	39	3	0	0	0	0.41369	1	27376	27376		1.1933	0.12188	1	168570			18998	7585	12571	12695	25662	25662					-0.07255967491141746
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3746337890625	2	634.377686	1266.74082	0.24845	0.00015761	-2.4394	-0.0015475	-2.191	-0.0013899	634.3762852996188	108.79	0.14047	108.81	108.76	108.9	0.019409					39	19	3	0	0	0	0.39744	2	27826	27826;27833		4.897	1.3005	1	6603600	+		18999	8403	12572	12696	25663;25664	25663					0.11811841617145546
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.377685546875	2	634.377686	1266.74082	0.24949	0.00015827	-0.55646	-0.00035301	-0.30698	-0.00019474	634.3778194355086	108.96	0.24014	108.98	108.9	109.14	0.019402					70	36	2	0	0	0	0.39744	1	27879	27879		4.897	1.6157	1	2339600	+		19000	8403	12572	12696	25665	25665					0.11811841617145546
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	634.377686	1266.74082	-0.17292	-0.00010969	-0.019946	-1.2653E-05	-0.19286	-0.00012235	634.3783099188254	109.05	0.13048	109.05	109	109.13	0	0.036836	0.00053792	NaN	4.897	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	708290	+		19001	8403	12572	12696							0.11811841617145546
SHSYCLHPD	9	Unmodified	_SHSYCLHPD_					0	0	0		ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2589721679688	2	529.721641	1057.42873	0.16968	8.9884E-05	0.40652	0.00021534	0.5762	0.00030523	529.7216891271657	36.053	1.1886	36.053	35.617	36.806	0					76	45	3	0	0	0	0.25579	1	6191	6191		4.3292	0.38484	1	50021			19002	5136	12573	12697	25666	25666					-0.0976881039912314
SHTNQILEL	9	Unmodified	_SHTNQILEL_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7797241210938	2	527.780013	1053.54547	-0.12168	-6.4222E-05	-0.30969	-0.00016345	-0.43137	-0.00022767	527.7798077839753	32.084	0.5765	32.084	31.848	32.425	0					43	22	2	0	0	0	0.27332	1	4906	4906		10.074	0	1	109900	+		19003	10534	12574	12698	25667	25667					0.02084251092287559
SHTPQTPL	8	Unmodified	_SHTPQTPL_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.5858154296875	2	440.729792	879.445031	-0.20736	-9.1391E-05	0.50901	0.00022433	0.30164	0.00013294	440.72995447589585	30.665	0.56966	30.74	30.58	31.149	0.075403					66	31	3	0	0	0	0.35759	1	4387	4387		11.64	0	1	48098			19004	3019	12575	12699	25668	25668					0.00048638829287028784
SHTSDGAH	8	Unmodified	_SHTSDGAH_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2428894042969	2	406.170099	810.325644	0.11026	4.4783E-05	-0.62121	-0.00025232	-0.51095	-0.00020753	406.1698658361879	33.1	1.4129	33.1	32.215	33.628	0					80	59	2	0	0	0	0.3576	1	5370	5370		5.7604	0	1	29260	+		19005	7940	12576	12700	25669	25669					-0.08710554795425196
SHTSDGAH	8	Unmodified	_SHTSDGAH_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	406.170099	810.325644	-0.24121	-9.7972E-05	-0.28084	-0.00011407	-0.52205	-0.00021204	406.1699998655672	32.796	0.96073	32.87	32.439	33.4	0.073784	-0.1149	0.00019141	NaN	5.7604	75	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29037	+		19006	7940	12576	12700							-0.08710554795425196
SHVENDLSF	9	Unmodified	_SHVENDLSF_					0	0	0			REV__ENSG00000101144|ENST00000395863|BMP7	REV__ENSG00000101144|ENST00000395863|BMP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2401123046875	2	524.240721	1046.46689	-0.62125	-0.00032568	-0.12975	-6.802E-05	-0.751	-0.0003937	524.2404440160815	41.76	0.39302	41.76	41.575	41.968	0					30	14	3	0	0	0	0.16392	1	7834	7834		22.736	0	1	136020	+		19007	8412	12577	12701	25670	25670					-0.054486012128108996
SHVTSPSSDVI	11	Unmodified	_SHVTSPSSDVI_					0	0	0		nc|ENSG00000130695|Q6P2H3|CEP85;ENSG00000130695|ENST00000451429|CEP85	nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3|CEP85	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.76171875	2	564.78021	1127.54587	0.06825	3.8546E-05	-0.45094	-0.00025468	-0.38269	-0.00021613	564.779890998774	34.57	0.35475	34.646	34.445	34.799	0.076244					38	16	3	0	0	0	0.31057	1	5556	5556		5.2969	1.7004	1	57181			19008	2481	12578	12702	25671	25671					-0.01280373978534044
SIACPSTAVIL	11	Unmodified	_SIACPSTAVIL_					0	0	0		ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000485650.5_1_13:28015203-28024670:-|nuORF	ENST00000381120.7_1_13:28014569-28024670:-|nuORF	ENST00000381120.7_1_13:28014569-28024670:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7971801757812	2	537.796817	1073.57908	0.76561	0.00041174	0.062277	3.3492E-05	0.82789	0.00044523	537.7968883971672	97.407	1.4457	97.448	97.189	98.635	0.040855					172	74	4	0	0	0	0.056053	5	24663	24580;24619;24663;24716;24766		56.177	13.875	1	1321600			19009	6292	12579	12703	25672;25673;25674;25675;25676	25674					0.045235365398411886
SIADLEHCI	9	Unmodified	_SIADLEHCI_					0	0	0			REV__ENST00000439523.1_1_1:247206892-247207219:+|nuORF	REV__ENST00000439523.1_1_1:247206892-247207219:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2926025390625	2	500.742042	999.469531	0.23869	0.00011952	0.47034	0.00023552	0.70904	0.00035504	500.74219650204765	56.492	0.47682	56.492	56.271	56.748	0					23	17	2	0	0	0	0.23598	1	12250	12250		15.847	0	1	103260	+		19010	11878	12580	12704	25677	25677					-0.03022469079496659
SICLAHLVPL	10	Unmodified	_SICLAHLVPL_					0	0	0		ENST00000360472.8_1_1:160183272-160183497:+|nuORF	ENST00000360472.8_1_1:160183272-160183497:+|nuORF	ENST00000360472.8_1_1:160183272-160183497:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7683715820312	2	533.309895	1064.60524	0.59153	0.00031547	-3.3008	-0.0017603	-2.7092	-0.0014449	533.3084119207739	79.856	0.40054	79.883	79.648	80.049	0.026428					16	13	2	0	0	0	0.31803	1	19209	19209		3.2813	0.97858	1	66075			19011	6154	12581	12705	25678	25678					0.07551850501954505
SIEALRSLI	9	Unmodified	_SIEALRSLI_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2433776855469	2	501.303124	1000.5917	0.56667	0.00028407	-0.20168	-0.0001011	0.36499	0.00018297	501.3030544325625	54.857	0.42992	54.857	54.682	55.112	0					22	15	2	0	0	0	0.2418	1	11765	11765		13.906	3.0821	1	92568	+		19012	8780	12582	12706	25679	25679					0.09142315994370165
SIEGPDAKL	9	Unmodified	_SIEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2503356933594	2	465.250557	928.486562	0.14416	6.7069E-05	0.2342	0.00010896	0.37835	0.00017603	465.2507608691284	39.157	0.56385	39.157	38.918	39.482	0					29	20	2	0	0	0	0.081383	1	7038	7038		36.506	5.2379	1	86561			19013	2279	12583	12707	25680	25680					0.01945774797957256
SIEGPDAKL	9	Unmodified	_SIEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	465.250557	928.486562	0.036202	1.6843E-05	-0.10262	-4.7744E-05	-0.066419	-3.0901E-05	465.25046790283693	39.042	0.45494	39.128	38.885	39.339	0.08688	-0.014432	-4.5924E-05	NaN	36.506	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62544			19014	2279	12583	12707							0.01945774797957256
SIENPRLL	8	Unmodified	_SIENPRLL_					0	0	0			REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.25970458984375	2	471.274367	940.53418	-0.45239	-0.0002132	-0.91067	-0.00042918	-1.3631	-0.00064238	471.2738264231374	42.948	0.35488	42.948	42.736	43.091	0					25	11	3	0	0	0	0.52502	1	8189	8189		9.3474	0	1	37976	+		19015	11666	12584	12708	25681	25681					0.061534737887996016
SIENPRLL	8	Unmodified	_SIENPRLL_					0	0	0			REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	471.274367	940.53418	-0.45239	-0.0002132	-0.91067	-0.00042918	-1.3631	-0.00064238	471.2738264231374	42.948	0.35488	42.948	42.736	43.091	0	0.017502	-0.00067655	NaN	9.3474	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37976	+		19016	11666	12584	12708							0.061534737887996016
SIEWKRMFL	9	Unmodified	_SIEWKRMFL_					0	0	0		ENST00000498541.1_1_10:113942591-113974138:-|nuORF	ENST00000498541.1_1_10:113942591-113974138:-|nuORF	ENST00000498541.1_1_10:113942591-113974138:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1488952636719	3	403.886476	1208.6376	-0.25197	-0.00010177	1.2705	0.00051314	1.0185	0.00041137	404.2216166051748	25.365	0.1535	25.461	25.351	25.505	0.096073					15	12	2	0	0	0	0.25989	1	2830	2830		0.23584	0	1	7130.7			19017	6855	12585	12709	25682	25682					0.041626379049830575
SIFHSNPR	8	Unmodified	_SIFHSNPR_					0	0	0			REV__EGFLAM|p.D882H|1|0.2|ENSG00000164318|chr5:38451391-38451391|G/C|missense_variant	REV__EGFLAM|p.D882H|1|0.2|ENSG00000164318|chr5:38451391-38451391|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7560729980469	2	479.248683	956.482814	-0.11707	-5.6105E-05	-1.4242	-0.00068256	-1.5413	-0.00073867	479.2480271152876	39.328	0.21134	39.417	39.321	39.533	0.088562					14	9	2	0	0	0	0.3576	1	6974	6974		5.2307	0	1	25356	+		19018	7904	12586	12710	25683	25683					0.0028314981475432432
SIFVIGESTL	10	Unmodified	_SIFVIGESTL_					0	0	0			REV__ENSG00000120008|ENST00000263461|WDR11	REV__ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3084106445312	2	533.294965	1064.57538	0.47447	0.00025303	0.17015	9.0743E-05	0.64463	0.00034378	533.2949059745182	68.471	0.77182	68.471	68.211	68.983	0					37	28	2	0	0	0	0.44496	1	16020	16020		5.7319	0.97584	1	106360	+		19019	8868	12587	12711	25684	25684					0.04567190037619184
SIHVLRGSLF	10	Unmodified	_SIHVLRGSLF_					0	0	0			REV__nc|ENSG00000049246|P56645|PER3	REV__nc|ENSG00000049246|P56645|PER3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.8214111328125	2	564.82984	1127.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.688	1	84.711	84.211	85.211	0.023125								0	0	0	0.33395	1	20729	20729		7.2892	0.56607	1		+		19020	8046	12588	12712	25685	25685					0.08641113496878461
SIIAVIYGRYL	11	Unmodified	_SIIAVIYGRYL_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8765869140625	2	634.374081	1266.73361	-0.17226	-0.00010928	3.5779	0.0022697	3.4057	0.0021605	634.3767816952743	108.4	0.15807	108.4	108.31	108.46	0					47	20	3	0	0	0	0.40578	1	27945	27945		2.9952	0	1	4856500			19021	2745	12589	12713	25686	25686					0.11091109016706469
SIIPVHQVIDK	11	Unmodified	_SIIPVHQVIDK_					0	0	0		nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000230173.10_3_6:142762047-142764649:+|nuORF;ENST00000497898.2_1_6:142759254-142764649:+|nuORF;ENST00000472054.2_1_6:142738255-142764649:+|nuORF	nc|ENSG00000112414|Q86SQ4-4|ADGRG6	nc|ENSG00000112414|Q86SQ4-4|ADGRG6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.914794921875	3	416.915201	1247.72377	0.051097	2.1303E-05	-0.26483	-0.00011041	-0.21374	-8.911E-05	416.91497369820894	29.534	0.37351	29.534	29.362	29.736	0					43	20	3	0	0	0	0.31101	1	4160	4160		0.073264	0.073264	1	47510			19022	1759	12590	12714	25687	25687					0.10981921011330087
SIKTDFDH	8	Unmodified	_SIKTDFDH_					0	0	0		tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.19891357421875	2	481.732532	961.45051	0.085431	4.1155E-05	2.7726	0.0013357	2.8581	0.0013768	481.73235752767357	38.248	1.0234	38.334	38.047	39.07	0.08688					64	38	3	0	0	0	0.3576	1	6574	6574		5.2307	0.47466	1	42240			19023	13548	12591	12715	25688	25688					-0.031756823789010014
SILFLRCFL	9	Unmodified	_SILFLRCFL_					0	0	0			REV__ENST00000531389.2_1_12:122991779-122992905:-|nuORF	REV__ENST00000531389.2_1_12:122991779-122992905:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.3184204101562	2	556.320263	1110.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.86	1	106.86	106.36	107.36	0								0	0	0	0.28527	1	27566	27566		2.0598	0	1		+		19024	12357	12592	12716	25689	25689					0.07508440881611023
SILWPDLL	8	Unmodified	_SILWPDLL_					0	0	0		ENST00000329314.5_1_4:165897854-165898724:-|nuORF	ENST00000329314.5_1_4:165897854-165898724:-|nuORF	ENST00000329314.5_1_4:165897854-165898724:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.77581787109375	2	478.776211	955.537869	0.089621	4.2908E-05	0.18067	8.65E-05	0.27029	0.00012941	478.77617986242217	96.294	0.82213	96.294	96.002	96.824	0					89	38	4	0	0	0	0.52924	1	24356	24356		8.5933	0	1	997420			19025	6052	12593	12717	25690	25690					0.058321435626680795
SIMTTMSSEP	10	Unmodified	_SIMTTMSSEP_					0	0	0			REV__chr1:206841078-206842527|303|14.53|0.84|4.11|+|1|IL19,IL19|1	REV__chr1:206841078-206842527|303|14.53|0.84|4.11|+|1|IL19,IL19|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.8396606445312	2	542.238475	1082.4624	0.36057	0.00019551	-1.2732	-0.00069039	-0.91264	-0.00049487	542.2375995689363	76.742	0.72817	76.742	76.415	77.144	0					96	25	5	0	0	0	0.31616	1	18549	18549		10.074	10.074	1	406150	+		19026	7766	12594	12718	25691	25691					-0.07553569742231048
SINNYSVDL	9	Unmodified	_SINNYSVDL_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7677001953125	2	512.750921	1023.48729	0.29547	0.0001515	-0.056397	-2.8918E-05	0.23908	0.00012259	512.7508623028996	50.185	1.0207	50.259	49.979	51	0.07312					99	36	5	0	0	0	0.12214	1	10280	10280		27.629	1.3607	1	2812600	+		19027	10260	12595	12719	25692	25692					-0.023514305530056845
SIPDELVIK	9	Unmodified	_SIPDELVIK_					0	0	0		nc|ENSG00000155085|Q5TCS8-1|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;AK9|p.M1006Vfs*17|1|0.26|ENSG00000155085|chr6:109546075-109546076|AT/-|frameshift_variant;nc|ENSG00000155085|Q5TCS8-6|AK9;ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-2|AK9	nc|ENSG00000155085|Q5TCS8-1|AK9	nc|ENSG00000155085|Q5TCS8-1|AK9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.3111267089844	2	507.297507	1012.58046	0.15111	7.6658E-05	0.025386	1.2878E-05	0.1765	8.9536E-05	507.29744493585014	60.133	0.50547	60.206	60.044	60.55	0.072338					31	17	3	0	0	0	0.2125	1	13249	13249		17.113	2.2746	1	166990			19028	21	12596	12720	25693	25693					0.07467493900242061
SIPHSDLLD	9	Unmodified	_SIPHSDLLD_					0	0	0		XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant;XPO7|p.P884L|1|0.05|ENSG00000130227|chr8:21999543-21999543|C/T|missense_variant;ENSG00000130227|ENST00000252512|XPO7	XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant	XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.75311279296875	2	498.753464	995.492375	-0.08097	-4.0384E-05	-0.16377	-8.1679E-05	-0.24474	-0.00012206	498.7532897236354	44.058	0.70186	44.058	43.829	44.531	0					54	23	3	0	0	0	0.065541	2	8503	8503;8553		39.957	7.6518	1	249310			19029	2459	12597	12721	25694;25695	25694					-0.0055512669038080276
SIPHSDLLD	9	Unmodified	_SIPHSDLLD_					0	0	0		XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant;XPO7|p.P884L|1|0.05|ENSG00000130227|chr8:21999543-21999543|C/T|missense_variant;ENSG00000130227|ENST00000252512|XPO7	XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant	XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7536315917969	2	498.753464	995.492375	0.050189	2.5032E-05	0.0954	4.7581E-05	0.14559	7.2613E-05	498.75341637061206	43.959	0.65366	44.048	43.767	44.421	0.088924					50	22	3	0	0	0	0.10067	1	8339	8339		32.305	0	1	228590			19030	2459	12597	12721	25696	25696					-0.0055512669038080276
SIPHSDLLD	9	Unmodified	_SIPHSDLLD_					0	0	0		XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant;XPO7|p.P884L|1|0.05|ENSG00000130227|chr8:21999543-21999543|C/T|missense_variant;ENSG00000130227|ENST00000252512|XPO7	XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant	XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	498.753464	995.492375	-0.08097	-4.0384E-05	-0.16377	-8.1679E-05	-0.24474	-0.00012206	498.7532897236354	44.058	0.70186	44.058	43.829	44.531	0	0.0047345	-7.7426E-05	NaN	39.957	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249310			19031	2459	12597	12721							-0.0055512669038080276
SIPHSDLLD	9	Unmodified	_SIPHSDLLD_					0	0	0		XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant;XPO7|p.P884L|1|0.05|ENSG00000130227|chr8:21999543-21999543|C/T|missense_variant;ENSG00000130227|ENST00000252512|XPO7	XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant	XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.753464	995.492375	0.050189	2.5032E-05	0.0954	4.7581E-05	0.14559	7.2613E-05	498.75341637061206	43.959	0.65366	44.048	43.767	44.421	0.088924	-0.0047345	0.00018109	NaN	39.957	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228590			19032	2459	12597	12721							-0.0055512669038080276
SISETVILR	9	Unmodified	_SISETVILR_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.30035400390625	2	509.300581	1016.58661	0.41902	0.00021341	-0.70761	-0.00036039	-0.28859	-0.00014698	509.30022326296086	48.079	0.43788	48.159	48.004	48.442	0.080029					24	15	2	0	0	0	0.20358	1	9600	9600		18.146	3.3081	1	64197			19033	1919	12598	12722	25697	25697					0.07898012131761334
SISGSYFF	8	Unmodified	_SISGSYFF_					0	0	0		ENST00000545764.1_1_6:160208906-160209185:-|nuORF;ENST00000536607.1_1_6:160208906-160210500:-|nuORF	ENST00000545764.1_1_6:160208906-160209185:-|nuORF	ENST00000545764.1_1_6:160208906-160209185:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.2146301269531	2	454.213443	906.412334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.072	1	45.16	44.66	45.66	0.08754								0	0	0	0.38822	1	8696	8696		2.8892	1.045	1				19034	7046	12599	12723	25698	25698					-0.04461568293572782
SISPNCGYINS	11	Unmodified	_SISPNCGYINS_					0	0	0		nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	nc|ENSG00000164078|Q04912-5|MST1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2774658203125	2	577.760963	1153.50737	0.50952	0.00029438	0.64465	0.00037245	1.1542	0.00066684	577.7611110673165	68.242	1.2711	68.305	67.812	69.083	0.063507					103	47	3	0	0	0	0.36299	1	15801	15801		10.8	1.4164	1	478620			19035	3980	12600	12724	25699	25699					-0.06324002884684887
SITSKVQELQN	11	Unmodified	_SITSKVQELQN_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.24395751953125	3	416.226103	1245.65648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.886	1	51.953	51.453	52.453	0.067173								0	0	0	0.33503	1	10751	10751		1.0136	0	1				19036	2346	12601	12725	25700	25700					0.043478460097276184
SITVAQQEC	9	Unmodified	_SITVAQQEC_					0	0	0			REV__ENST00000451621.2_1_14:106743549-106744185:-|nuORF	REV__ENST00000451621.2_1_14:106743549-106744185:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2056884765625	2	489.731674	977.448796	0.1076	5.2696E-05	0.25141	0.00012312	0.35901	0.00017582	489.7319794463804	36.263	0.5728	36.263	35.919	36.492	0					26	21	2	0	0	0	0.25051	1	6142	6142		4.3292	0	1	24132	+		19037	11934	12602	12726	25701	25701					-0.04083059459162541
SIVAFLAAF	9	Unmodified	_SIVAFLAAF_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7710266113281	2	469.770929	937.527304	0.34728	0.00016314	-1.6632	-0.00078131	-1.3159	-0.00061817	469.77037403998213	93.832	0.42383	93.832	93.573	93.997	0					25	18	2	0	0	0	0.045114	1	23644	23644		44.407	0	1	192030	+		19038	8471	12603	12727	25702	25702					0.05604160908217182
SIVFSALDS	9	Unmodified	_SIVFSALDS_					0	0	0		KANSL1|p.L274V|1|0.23|ENSG00000120071|chr17:46171324-46171324|G/C|missense_variant	KANSL1|p.L274V|1|0.23|ENSG00000120071|chr17:46171324-46171324|G/C|missense_variant	KANSL1|p.L274V|1|0.23|ENSG00000120071|chr17:46171324-46171324|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7685546875	2	469.745108	937.475663	-0.29778	-0.00013988	-0.82159	-0.00038594	-1.1194	-0.00052582	469.74457335047265	44.472	0.33475	44.472	44.298	44.632	0					13	11	2	0	0	0	0.25174	1	8615	8615		7.2892	1.5288	1	37777			19039	7366	12604	12728	25703	25703					0.004423724236630733
SIVLQAPRFVM	11	Unmodified	_SIVLQAPRFVM_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8603515625	2	630.860283	1259.70601	0.078593	4.9581E-05	0.65947	0.00041604	0.73807	0.00046562	630.8604671168754	90.089	1.349	90.089	89.834	91.183	0					82	51	3	0	0	0	0.40693	1	22495	22495		2.7352	1.0826	1	1158300			19040	2505	12605	12729	25704	25704					0.08654882484779591
SIWPNSPEAPT	11	Unmodified	_SIWPNSPEAPT_					0	0	0			REV__nc|ENSG00000182732|P49758-12|RGS6	REV__nc|ENSG00000182732|P49758-12|RGS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8090209960938	2	599.790578	1197.5666	0.46271	0.00027753	0.50022	0.00030003	0.96292	0.00057755	599.7907498831739	62.851	0.76947	62.851	62.575	63.345	0					41	29	2	0	0	0	0.31637	1	14254	14254		16.149	0	1	319700	+		19041	10574	12606	12730	25705	25705					-0.024277835988641527
SIWPNSPEAPT	11	Unmodified	_SIWPNSPEAPT_					0	0	0			REV__nc|ENSG00000182732|P49758-12|RGS6	REV__nc|ENSG00000182732|P49758-12|RGS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8086547851562	2	599.790578	1197.5666	0.37331	0.00022391	0.70212	0.00042112	1.0754	0.00064503	599.7908738483874	62.789	0.72353	62.861	62.503	63.227	0.072701					41	27	2	0	0	0	0.31637	2	14081	14081;14125		16.149	2.2431	1	273720	+		19042	10574	12606	12730	25706;25707	25706					-0.024277835988641527
SIYVKFPLL	9	Unmodified	_SIYVKFPLL_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3302001953125	2	540.328611	1078.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.831	1	81.852	81.352	82.352	0.021866								0	0	0	0.28409	1	19858	19858		2.3027	0	1				19043	718	12607	12731	25708	25708					0.1064926503922834
SKCKLSTANQ	10	Unmodified	_SKCKLSTANQ_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7854614257812	2	540.279323	1078.54409	0.265	0.00014317	0.86087	0.00046511	1.1259	0.00060828	540.2796136666368	53.155	1.458	53.155	52.584	54.042	0					174	55	4	0	0	0	0.42184	1	11391	11391		9.544	0.19654	1	1889800	+		19044	10979	12608	12732	25709	25709					0.00796293731877995
SKCQGSVC	8	Unmodified	_SKCQGSVC_					0	0	0			REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4	REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.17572021484375	2	406.175481	810.336409	0.14052	5.7076E-05	0.39149	0.00015901	0.53201	0.00021609	406.1755079660434	88.125	0.77108	88.155	87.906	88.677	0.030037					49	29	2	0	0	0	0.54081	1	21853	21853		0.79363	0	1	251180	+		19045	10744	12609	12733	25710	25710					-0.07634611737000796
SKCQGSVC	8	Unmodified	_SKCQGSVC_					0	0	0			REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4	REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	406.175481	810.336409	0.66575	0.00027041	0.021028	8.541E-06	0.68678	0.00027895	406.17534869067634	88.24	1.3583	88.24	87.32	88.679	0	0.042511	-0.00018859	NaN	0.79363	62	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233110	+		19046	10744	12609	12733							-0.07634611737000796
SKDSPNLLV	9	Unmodified	_SKDSPNLLV_					0	0	0			REV__MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	REV__MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7719421386719	2	486.771657	971.528761	-0.12526	-6.0971E-05	0.40536	0.00019732	0.28011	0.00013635	486.7717215288695	34.872	0.35381	34.872	34.734	35.088	0					24	12	3	0	0	0	0.33704	1	5758	5758		1.8442	0	1	59144	+		19047	9057	12610	12734	25711	25711					0.041857502063294305
SKEFLQVFF	9	Unmodified	_SKEFLQVFF_					0	0	0			REV__nc|ENSG00000138658|Q86YA3-7|ZGRF1	REV__nc|ENSG00000138658|Q86YA3-7|ZGRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.8053588867188	2	572.8055	1143.59645	0.30879	0.00017687	-0.20128	-0.00011529	0.10751	6.158E-05	572.805298256794	88.799	0.83572	88.831	88.578	89.414	0.032257					104	33	4	0	0	0	0.0093779	1	22016	22016		69.105	0	1	1489400	+		19048	9322	12611	12735	25712	25712					0.030392001371410515
SKEKRKHKDTY	11	Unmodified	_SKEKRKHKDTY_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.9284362792969	3	473.92828	1418.76301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.86	1	113.86	113.36	114.36	0								0	0	0	0.33897	1	29125	29125		1.1098	0.33322	1				19049	1773	12612	12736	25713	25713					0.0703802129489759
SKETKKKEK	9	Unmodified	_SKETKKKEK_					0	0	0			REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3328857421875	2	553.332413	1104.65027	0.47806	0.00026452	0.044825	2.4803E-05	0.52288	0.00028933	553.3324498227109	90.946	1.0207	90.946	90.657	91.678	0					87	37	4	0	0	0	0.3182	1	22765	22765		4.3292	0.73274	1	749330	+		19050	10805	12613	12737	25714	25714					0.10213372568841805
SKETKKKEK	9	Unmodified	_SKETKKKEK_					0	0	0			REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	553.332413	1104.65027	0.47806	0.00026452	0.044825	2.4803E-05	0.52288	0.00028933	553.3324498227109	90.946	1.0207	90.946	90.657	91.678	0	-0.013345	-0.00011791	NaN	4.3292	87	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749330	+		19051	10805	12613	12737							0.10213372568841805
SKETKKKEK	9	Unmodified	_SKETKKKEK_					0	0	0			REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	553.332413	1104.65027	0.30179	0.00016699	0.23052	0.00012756	0.53232	0.00029455	553.3325658446876	90.937	0.96033	90.973	90.683	91.644	0.035446	0.013345	8.7599E-05	NaN	4.3292	86	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	680310	+		19052	10805	12613	12737							0.10213372568841805
SKFDVNYAF	9	Unmodified	_SKFDVNYAF_					0	0	0		nc|ENSG00000085382|Q8IYU2-4|HACE1;ENSG00000085382|ENST00000262903|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7930908203125	2	545.763832	1089.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.03	1	52.098	51.598	52.598	0.067173								0	0	0	0.2722	1	10795	10795		4.756	0	1				19053	958	12614	12738	25715	25715					-0.02806536310708907
SKFFFVDEF	9	Unmodified	_SKFFFVDEF_					0	0	0		tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2819213867188	2	583.281857	1164.54916	0.80003	0.00046664	0.1141	6.6554E-05	0.91414	0.0005332	583.2818062126861	93.1	1.0683	93.138	92.808	93.876	0.037369					137	42	5	0	0	0	0.25979	1	23480	23480		11.64	0	1	336050			19054	13682	12615	12739	25716	25716					-0.02653079133870051
SKFGRELEI	9	Unmodified	_SKFGRELEI_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.79931640625	2	539.798206	1077.58186	0.25806	0.0001393	-1.5562	-0.00084001	-1.2981	-0.00070071	539.7983314613087	48.444	1.2929	48.444	48.159	49.452	0					116	44	4	0	0	0	0.22083	1	10004	10004		16.149	1.3108	1	1460300			19055	13666	12616	12740	25717	25717					0.046171279889904326
SKGFWSLLF	9	Unmodified	_SKGFWSLLF_					0	0	0		ENST00000520044.5_1_8:67579912-67592186:+|nuORF;nc|nan|Q96CB5|C8orf44	ENST00000520044.5_1_8:67579912-67592186:+|nuORF	ENST00000520044.5_1_8:67579912-67592186:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2896118164062	2	542.794935	1083.57532	0.42712	0.00023184	-1.7595	-0.00095503	-1.3323	-0.00072319	543.2970030904821	100.61	0.39062	100.61	100.44	100.83	0					41	22	3	0	0	0	0.25416	1	25758	25758		5.2307	0	1	67867			19056	6951	12617	12741	25718	25718					0.036872348282713574
SKHGFMTF	8	Unmodified	_SKHGFMTF_					0	0	0		ENST00000506714.5_1_4:89300148-89319290:+|nuORF;nc|ENSG00000138642|Q8IVU3-3|HERC6	ENST00000506714.5_1_4:89300148-89319290:+|nuORF	ENST00000506714.5_1_4:89300148-89319290:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.72857666015625	2	477.728738	953.442923	-0.054187	-2.5887E-05	-0.16471	-7.8685E-05	-0.21889	-0.00010457	477.7285805107551	90.079	0.47696	90.079	89.908	90.384	0					25	19	2	0	0	0	0.53817	1	22526	22526		2.5775	0	1	276800			19057	6892	12618	12742	25719	25719					-0.03566113180181674
SKHRFHLNC	9	Unmodified	_SKHRFHLNC_					0	0	0			REV__nc|ENSG00000113916|P41182-2|BCL6	REV__nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7902221679688	2	571.287817	1140.56108	0.28626	0.00016354	0.2449	0.00013991	0.53116	0.00030344	571.2873546981733	68.64	0.76127	68.702	68.407	69.168	0.062119					70	27	3	0	0	0	0.22344	1	15901	15901		15.847	0	1	355300	+		19058	8754	12619	12743	25720	25720					-0.0035774087161826174
SKIKLLIKR	9	Unmodified	_SKIKLLIKR_					0	0	0			REV__ENSG00000231861|ENST00000427338|OR5K2	REV__ENSG00000231861|ENST00000427338|OR5K2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8900756835938	2	549.889701	1097.76485	0.38237	0.00021026	0.27945	0.00015366	0.66182	0.00036393	549.8897542199722	111.29	0.61169	111.3	110.87	111.48	0.015678					137	87	2	0	0	0	0.34754	1	28366	28366		0.45834	0	1	1179600	+		19059	11041	12620	12744	25721	25721					0.21987726841462063
SKKIRDKTS	9	Unmodified	_SKKIRDKTS_					0	0	0		nc|ENSG00000085224|P46100-6|ATRX;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-6|ATRX	nc|ENSG00000085224|P46100-6|ATRX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8173217773438	2	531.81693	1061.61931	0.62734	0.00033363	0.21662	0.0001152	0.84395	0.00044883	531.8169825199466	85.795	0.91822	85.82	85.492	86.41	0.025169					61	33	3	0	0	0	0.32831	1	21085	21085		2.9952	2.9952	1	280160			19060	76	12621	12745	25722	25722					0.0909621925461579
SKKKKKKKA	9	Unmodified	_SKKKKKKKA_					0	0	0			REV__ENST00000265052.9_1_3:127410904-127410982:-|nuORF	REV__ENST00000265052.9_1_3:127410904-127410982:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.3795776367188	2	537.3795	1072.74445	0.48548	0.00026089	0.18259	9.8121E-05	0.66807	0.00035901	537.3794539873859	112.03	1.0116	112.04	111.86	112.87	0.014595					281	117	3	0	0	0	0.34704	1	28595	28595		0.52476	0	1	7156300	+		19061	11258	12622	12746	25723	25723					0.2109855618164147
SKKLKRIFV	9	Unmodified	_SKKLKRIFV_					0	0	0		chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8739624023438	2	559.874051	1117.73355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.65	1	111.65	111.15	112.15	0								0	0	0	0.22204	1	28578	28578		14.838	8.1151	1				19062	170	12623	12747	25724	25724					0.17939153807378716
SKKLKRIFV	9	Unmodified	_SKKLKRIFV_					0	0	0		chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8746948242188	2	559.874051	1117.73355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.78	1	111.78	111.28	112.28	0								0	0	0	0.24643	1	28604	28604		10.074	3.3508	1				19063	170	12623	12747	25725	25725					0.17939153807378716
SKKLKRIFV	9	Unmodified	_SKKLKRIFV_					0	0	0		chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.39306640625	2	559.874051	1117.73355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.81	1	111.81	111.31	112.31	0								0	0	0	0.24643	1	28611	28611		10.074	3.3508	1				19064	170	12623	12747	25726	25726					0.17939153807378716
SKKRPARS	8	Unmodified	_SKKRPARS_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.28564453125	2	465.2856	928.556647	0.75404	0.00035085	-0.83422	-0.00038815	-0.080175	-3.7304E-05	465.2851016559669	84.851	0.42854	84.851	84.704	85.132	0					28	16	2	0	0	0	0.53858	1	20936	20936		2.3027	0	1	499340			19065	1660	12624	12748	25727	25727					0.08951117977073864
SKKVVTKL	8	Unmodified	_SKKVVTKL_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.8050842285156	2	451.805303	901.596052	0.070229	3.173E-05	-0.71926	-0.00032497	-0.64903	-0.00029324	451.80490823163	112.4	0.95267	112.4	112.14	113.09	0					287	108	4	0	0	0	0.53926	2	28776	28776;28814		1.8442	0	1	5530800	+		19066	9764	12625	12749	25728;25729	25728					0.14131825207925885
SKKVVTKL	8	Unmodified	_SKKVVTKL_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.8048095703125	2	451.805303	901.596052	0.17361	7.844E-05	-0.64306	-0.00029054	-0.46944	-0.0002121	451.8048348750026	112.4	0.65504	112.42	112.21	112.87	0.014595					211	72	3	0	0	0	0.53926	1	28666	28666		1.8442	0	1	4242900	+		19067	9764	12625	12749	25730	25730					0.14131825207925885
SKLLRWVR	8	Unmodified	_SKLLRWVR_					0	0	0		ENST00000569682.5_1_15:30892398-30892566:+|nuORF	ENST00000569682.5_1_15:30892398-30892566:+|nuORF	ENST00000569682.5_1_15:30892398-30892566:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.347900390625	2	529.335093	1056.65563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.21	1	109.23	108.73	109.73	0.019402								0	0	0	0.38822	1	27925	27925		8.5933	1.8701	1				19068	7190	12626	12750	25731	25731					0.12957140941966827
SKNLSTYHYL	10	Unmodified	_SKNLSTYHYL_					0	0	0		ENST00000574406.1_1_17:5405270-5405480:-|nuORF	ENST00000574406.1_1_17:5405270-5405480:-|nuORF	ENST00000574406.1_1_17:5405270-5405480:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.3165283203125	2	613.31422	1224.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.155	1	40.155	39.655	40.655	0								0	0	0	0.33952	1	7340	7340		0.45834	0.057624	1				19069	7201	12627	12751	25732	25732					0.010564956721282215
SKPDILTR	8	Unmodified	_SKPDILTR_					0	0	0		ENSG00000204946|ENST00000434415|ZNF783;nc|ENSG00000204946|Q6ZMS7-1|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.27392578125	2	465.274367	928.53418	-0.16149	-7.5136E-05	-0.27123	-0.00012619	-0.43271	-0.00020133	465.2741464127167	45.59	0.76799	45.59	45.301	46.069	0					45	26	2	0	0	0	0.49783	1	9047	9047		13.042	0	1	359420			19070	5500	12628	12752	25733	25733					0.06705473788804284
SKRGSSWAIRL	11	Unmodified	_SKRGSSWAIRL_					0	0	0		ENST00000490638.5_1_9:35660467-35660770:-|nuORF	ENST00000490638.5_1_9:35660467-35660770:-|nuORF	ENST00000490638.5_1_9:35660467-35660770:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.7869262695312	2	630.862203	1259.70985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.92	1	55.92	55.42	56.42	0								0	0	0	0.33873	1	12117	12117		1.1933	0.59184	1				19071	6806	12629	12753	25734	25734					0.09038688302894116
SKRRRGLSF	9	Unmodified	_SKRRRGLSF_					0	0	0			REV__ENST00000245451.8_1_14:54418591-54418858:-|nuORF	REV__ENST00000245451.8_1_14:54418591-54418858:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8303833007812	2	553.830706	1105.64686	0.43706	0.00024206	-0.82267	-0.00045562	-0.38561	-0.00021356	553.830101724121	87.546	0.53964	87.576	87.311	87.851	0.030037					42	20	3	0	0	0	0.3354	1	21557	21557		2.0598	0	1	313470	+		19072	11203	12630	12754	25735	25735					0.09826167305504896
SKTSGKAK	8	Unmodified	_SKTSGKAK_					0	0	0		nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF	nc|ENSG00000123243|Q86UX2-4|ITIH5	nc|ENSG00000123243|Q86UX2-4|ITIH5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.7397766113281	2	403.74016	805.465767	0.33674	0.00013595	-1.1829	-0.0004776	-0.84621	-0.00034165	403.7395955394887	81.159	0.59396	81.182	81.023	81.617	0.023605					44	21	4	0	0	0	0.54199	2	19660	19660;19709		0	0	1	542650			19073	6717	12631	12755	25736;25737	25736					0.05525229208944893
SKTSGKAK	8	Unmodified	_SKTSGKAK_					0	0	0		nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF	nc|ENSG00000123243|Q86UX2-4|ITIH5	nc|ENSG00000123243|Q86UX2-4|ITIH5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	403.74016	805.465767	1.0151	0.00040982	-2.0151	-0.00081357	-1	-0.00040375	403.73928800784563	81.295	0.60874	81.295	81.023	81.632	0	0.056075	-0.00014639	NaN	0	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279550			19074	6717	12631	12755							0.05525229208944893
SKVKKSIL	8	Unmodified	_SKVKKSIL_					0	0	0		ENST00000590854.5_3_18:43431870-43432008:-|nuORF	ENST00000590854.5_3_18:43431870-43432008:-|nuORF	ENST00000590854.5_3_18:43431870-43432008:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.8053894042969	2	451.805303	901.596052	0.070229	3.173E-05	-0.71926	-0.00032497	-0.64903	-0.00029324	451.80490823163	112.4	0.95267	112.4	112.14	113.09	0					287	108	4	0	0	0	0.53926	1	28737	28737		1.8442	1.2427	1	5530800			19075	7263	12632	12756	25738	25738					0.14131825207948623
SKVKVTKL	8	Unmodified	_SKVKVTKL_					0	0	0		FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant;FAM135A|p.K660Rfs*17|1|0.07|ENSG00000082269|chr6:70525062-70525063|-/GACTTTTGTTC|frameshift_variant;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant	FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.8050842285156	2	451.805303	901.596052	0.070229	3.173E-05	-0.71926	-0.00032497	-0.64903	-0.00029324	451.80490823163	112.4	0.95267	112.4	112.14	113.09	0					287	108	4	0	0	0	0.5411	1	28863	28863		0.6015	0	1	5530800			19076	919	12633	12757	25739	25739					0.14131825207925885
SKVLMSGELT	10	Unmodified	_SKVLMSGELT_					0	0	0			REV__SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense	REV__SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7869262695312	2	532.78645	1063.55835	-0.27346	-0.00014569	0.4111	0.00021903	0.13764	7.3333E-05	532.7866739904305	20.091	0.37709	20.091	19.965	20.342	0					60	36	3	0	0	0	0.46746	1	1496	1496		1.4819	0	1	35217	+		19077	13011	12634	12758	25740	25740					0.029109461601592557
SKVRKSRSW	9	Unmodified	_SKVRKSRSW_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330078125	2	567.330539	1132.64652	0.29401	0.0001668	-0.52459	-0.00029762	-0.23059	-0.00013082	567.3302062765836	88.75	0.56789	88.75	88.486	89.053	0					62	23	3	0	0	0	0.32112	1	22192	22192		3.9444	0	1	280580			19078	953	12635	12759	25741	25741					0.0855074758567298
SKVRKSRSW	9	Unmodified	_SKVRKSRSW_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2693481445312	2	567.330539	1132.64652	0.46291	0.00026262	-1.6906	-0.00095911	-1.2276	-0.00069648	567.3294006541275	98.929	0.42397	98.929	98.715	99.139	0					40	28	2	0	0	0	0.32112	2	25218	25218;25266		3.9444	1.3669	1	80227			19079	953	12635	12759	25742;25743	25742					0.0855074758567298
SKWDFEEEM	9	Unmodified	_SKWDFEEEM_					0	0	0		ENSG00000137270|ENST00000259803|GCM1	ENSG00000137270|ENST00000259803|GCM1	ENSG00000137270|ENST00000259803|GCM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.746337890625	2	600.747521	1199.48049	0.21594	0.00012972	-1.48	-0.00088909	-1.264	-0.00075937	600.7467300306578	35.493	0.69661	35.572	35.382	36.078	0.078827					36	25	2	0	0	0	0.34704	1	5859	5859		0.52476	0.12405	1	43618			19080	2844	12636	12760	25744	25744					-0.11127111495875397
SKWRHVLWP	9	Unmodified	_SKWRHVLWP_					0	0	0		ENST00000434411.5_1_17:75084757-75084847:+|nuORF	ENST00000434411.5_1_17:75084757-75084847:+|nuORF	ENST00000434411.5_1_17:75084757-75084847:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.8382568359375	2	604.838	1207.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.92	1	119.93	119.43	120.43	0.013062								0	0	0	0.29233	1	30080	30080		0.6015	0	1				19081	6499	12637	12761	25745	25745					0.06592239453652837
SKYCKSTF	8	Unmodified	_SKYCKSTF_					0	0	0		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.7576599121094	2	482.233853	962.453153	-0.36721	-0.00017708	-0.17667	-8.5196E-05	-0.54388	-0.00026228	482.23376577451694	40.338	0.51475	40.428	40.257	40.771	0.089645					35	18	3	0	0	0	0.3576	1	7226	7226		4.756	1.8668	1	62392			19082	1406	12638	12762	25746	25746					-0.029575502455941205
SKYEEMYPPE	10	Unmodified	_SKYEEMYPPE_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.7777099609375	2	636.776279	1271.538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.218	1	51.218	50.718	51.718	0								0	0	0	0.33877	1	10683	10683		1.6526	0.17072	1				19083	2644	12639	12763	25747	25747					-0.08690269290309516
SLAAKTGQH	9	Unmodified	_SLAAKTGQH_					0	0	0			REV__ENSG00000147647|ENST00000351513|DPYS	REV__ENSG00000147647|ENST00000351513|DPYS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.74847412109375	2	456.748516	911.482479	-0.11454	-5.2315E-05	0.048171	2.2002E-05	-0.066366	-3.0313E-05	456.748267572446	24.103	0.3851	24.103	23.975	24.36	0					115	36	5	0	0	0	0.32614	1	2610	2610		3.2813	0	1	43416	+		19084	9576	12640	12764	25748	25748					0.02319730094905026
SLAAKTGQH	9	Unmodified	_SLAAKTGQH_					0	0	0			REV__ENSG00000147647|ENST00000351513|DPYS	REV__ENSG00000147647|ENST00000351513|DPYS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7483825683594	2	456.748516	911.482479	-0.10349	-4.7269E-05	-0.058962	-2.6931E-05	-0.16245	-7.4199E-05	456.74835379636346	23.917	0.38801	24.017	23.856	24.244	0.099739					102	37	4	0	0	0	0.32614	1	2422	2422		3.2813	0	1	35467	+		19085	9576	12640	12764	25749	25749					0.02319730094905026
SLAKEKGMSL	10	Unmodified	_SLAKEKGMSL_					0	0	0			REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF	REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.283203125	2	532.294442	1062.57433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.015	1	62.088	61.588	62.588	0.073421								0	0	0	0.33711	1	13832	13832		3.5965	0	1		+		19086	10299	12641	12765	25750	25750					0.04554652397064274
SLASYGLALL	10	Unmodified	_SLASYGLALL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.77655029296875	2	504.292225	1006.5699	0.47346	0.00023876	-0.023636	-1.192E-05	0.44983	0.00022684	504.2920416194687	80.085	0.31198	80.112	79.939	80.251	0.026436					15	10	2	0	0	0	0.30541	1	19352	19352		19.257	5.7491	1	54072			19087	4719	12642	12766	25751	25751					0.06687511245809219
SLATEGLGLS	10	Unmodified	_SLATEGLGLS_					0	0	0			REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8	REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2561950683594	2	474.25584	946.497126	0.30082	0.00014267	0.010629	5.0407E-06	0.31145	0.00014771	474.2558700407653	54.482	0.64236	54.547	54.285	54.927	0.065128					56	32	2	0	0	0	0.34138	1	11600	11600		18.146	1.9972	1	378310	+		19088	12888	12643	12767	25752	25752					0.021737574523854164
SLAVVMHL	8	Unmodified	_SLAVVMHL_					0	0	0		ENST00000378509.8_1_7:133979072-133979261:-|nuORF	ENST00000378509.8_1_7:133979072-133979261:-|nuORF	ENST00000378509.8_1_7:133979072-133979261:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2509460449219	2	435.249306	868.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.313	1	75.357	74.857	75.857	0.044037								0	0	0	0.38822	1	17872	17872		5.2307	0.90143	1				19089	6268	12644	12768	25753	25753					0.04455647859299461
SLAVVMHL	8	Unmodified	_SLAVVMHL_					0	0	0		ENST00000378509.8_1_7:133979072-133979261:-|nuORF	ENST00000378509.8_1_7:133979072-133979261:-|nuORF	ENST00000378509.8_1_7:133979072-133979261:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2510681152344	2	435.249306	868.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.479	1	75.523	75.023	76.023	0.044037								0	0	0	0.38822	1	17923	17923		5.2307	0.90143	1				19090	6268	12644	12768	25754	25754					0.04455647859299461
SLCSFIIETCL	11	Unmodified	_SLCSFIIETCL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.800048828125	2	614.801242	1227.58793	-0.40717	-0.00025033	-0.05811	-3.5726E-05	-0.46528	-0.00028606	614.8011624398493	33.839	0.34499	33.839	33.713	34.058	0					29	12	3	0	0	0	0.37533	1	5435	5435		9.3831	0	1	64120			19091	3591	12645	12769	25755	25755					-0.016758578859707995
SLDAHEICL	9	Unmodified	_SLDAHEICL_					0	0	0		ENST00000487266.1_1_21:27107719-27124637:+|nuORF;ENST00000419271.1_1_7:63353684-63354623:+|nuORF;GABPA|p.I434Nfs*22|1|0.06|ENSG00000154727|chr21:25769165-25769166|-/TAAT|frameshift_variant;ENSG00000154727|ENST00000400075|GABPA	ENST00000487266.1_1_21:27107719-27124637:+|nuORF	ENST00000487266.1_1_21:27107719-27124637:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.29254150390625	2	500.742042	999.469531	0.21923	0.00010978	-0.86279	-0.00043203	-0.64356	-0.00032226	500.74103250856325	56.431	0.58379	56.498	56.212	56.795	0.066452					26	21	2	0	0	0	0.23598	1	12102	12102		15.847	0	1	117550			19092	3564	12646	12770	25756	25756					-0.030224690795193965
SLDDNQFRM	9	Unmodified	_SLDDNQFRM_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000575192.1_1_17:4877670-4880473:-|nuORF;ENST00000572326.1_1_17:4876509-4881847:-|nuORF;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2535400390625	2	563.253305	1124.49206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.627	1	19.722	19.222	20.222	0.095232								0	0	0	0.28807	1	1320	1320		1.4819	0.79152	1				19093	1592	12647	12771	25757	25757					-0.06520869681889963
SLDSFFIKV	9	Unmodified	_SLDSFFIKV_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.274169921875	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.462	1	69.524	69.024	70.024	0.062126								0	0	0	0.25287	1	16090	16090		8.7454	2.0222	1		+		19094	11138	12648	12772	25758	25758					0.04479511245813228
SLEAFTCSLI	10	Unmodified	_SLEAFTCSLI_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2733764648438	2	542.273175	1082.5318	0.39168	0.0002124	-0.31734	-0.00017209	0.074334	4.0309E-05	542.2729999108767	79.243	0.67038	79.243	78.782	79.452	0					74	22	5	0	0	0	0.22666	3	19203	19203;19227;19243		30.637	4.3684	1	367890	+		19095	9544	12649	12773	25759;25760;25761	25759					-0.006167427311766005
SLEAFTCSLI	10	Unmodified	_SLEAFTCSLI_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.8396606445312	2	542.273175	1082.5318	0.35206	0.00019091	0.35511	0.00019257	0.70716	0.00038348	542.2732096454354	77.075	0.44427	77.075	76.73	77.175	0					33	15	3	0	0	0	0.29345	1	18549	18549		24.021	3.5669	1	275770	+		19096	9544	12649	12773	25762	25762					-0.006167427311766005
SLEAFTCSLI	10	Unmodified	_SLEAFTCSLI_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2733154296875	2	542.273175	1082.5318	0.33731	0.00018292	-0.26012	-0.00014106	0.077195	4.1861E-05	542.2728580517785	79.211	0.72935	79.237	78.734	79.464	0.026436					65	25	3	0	0	0	0.22666	1	19038	19038		30.637	4.3684	1	384030	+		19097	9544	12649	12773	25763	25763					-0.006167427311766005
SLEAFTCSLI	10	Unmodified	_SLEAFTCSLI_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.8397827148438	2	542.273175	1082.5318	0.47909	0.0002598	0.02099	1.1382E-05	0.50008	0.00027118	542.2732732512665	76.939	0.39753	76.978	76.758	77.156	0.03923					30	13	3	0	0	0	0.27491	1	18368	18368		30.637	4.3684	1	273670	+		19098	9544	12649	12773	25764	25764					-0.006167427311766005
SLEEIEHL	8	Unmodified	_SLEEIEHL_					0	0	0		ENST00000407916.2_1_7:55002433-55002823:+|nuORF	ENST00000407916.2_1_7:55002433-55002823:+|nuORF	ENST00000407916.2_1_7:55002433-55002823:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.23931884765625	2	485.248015	968.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.239	1	62.239	61.739	62.739	0								0	0	0	0.38822	1	14042	14042		9.3474	0	1				19099	6385	12650	12774	25765	25765					-0.004025290646723079
SLEERQRERL	10	Unmodified	_SLEERQRERL_					0	0	0			REV__nc|ENSG00000158856|Q08495-3|DMTN	REV__nc|ENSG00000158856|Q08495-3|DMTN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2485656738281	3	439.240747	1314.70041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.289	1	53.354	52.854	53.854	0.06543								0	0	0	0.33959	1	11178	11178		0.69767	0	1		+		19100	9814	12651	12775	25766	25766					0.05564875226696131
SLEEYSVFRF	10	Unmodified	_SLEEYSVFRF_					0	0	0		ENST00000353703.8_2_20:43536121-43536193:+|nuORF	ENST00000353703.8_2_20:43536121-43536193:+|nuORF	ENST00000353703.8_2_20:43536121-43536193:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.814453125	2	638.814053	1275.61355	0.22785	0.00014556	0.13173	8.4151E-05	0.35958	0.00022971	638.813966997602	56.11	1.1079	56.11	55.866	56.974	0					83	40	3	0	0	0	0.45773	1	12373	12373		3.2813	0	1	2005400			19101	6110	12652	12776	25767	25767					-0.013229240477357962
SLEHKTQTP	9	Unmodified	_SLEHKTQTP_					0	0	0		nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.772216796875	2	520.772188	1039.52982	-0.097464	-5.0756E-05	0.030774	1.6026E-05	-0.066689	-3.473E-05	520.7721449451094	32.516	0.78236	32.59	32.408	33.19	0.07378					92	38	3	0	0	0	0.32375	1	4884	4884		3.5965	0.31518	1	211340			19102	4052	12653	12777	25768	25768					0.011639645752211436
SLEHKTQTP	9	Unmodified	_SLEHKTQTP_					0	0	0		nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	520.772188	1039.52982	-0.090873	-4.7324E-05	-0.021508	-1.1201E-05	-0.11238	-5.8525E-05	520.7721242925463	32.56	1.1063	32.56	32.385	33.491	0	-0.014906	-2.3033E-05	NaN	3.5965	105	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220310			19103	4052	12653	12777							0.011639645752211436
SLEHPQEE	8	Unmodified	_SLEHPQEE_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7177734375	2	484.719621	967.42469	0.072078	3.4937E-05	1.0257	0.00049718	1.0978	0.00053211	484.71822929280427	90.902	1.4938	90.902	90.184	91.678	0					98	55	4	0	0	0	0.3576	1	22973	22973		2.5775	0	1	305910			19104	2846	12654	12778	25769	25769					-0.060325766211803966
SLELGHVLI	9	Unmodified	_SLELGHVLI_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.79248046875	2	490.792392	979.570232	0.45429	0.00022296	-0.084831	-4.1634E-05	0.36946	0.00018133	490.79225170298963	68.082	0.92026	68.145	67.874	68.794	0.063499					77	34	3	0	0	0	0.25979	1	15718	15718		11.64	0	1	727480			19105	4777	12655	12779	25770	25770					0.07962930965663872
SLETIGQHIP	10	Unmodified	_SLETIGQHIP_					0	0	0			REV__nc|ENSG00000149636|Q9H410-2|DSN1	REV__nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7954711914062	2	547.795663	1093.57677	0.034307	1.8793E-05	0.14419	7.8988E-05	0.1785	9.7781E-05	547.7956623401623	24.344	0.27369	24.443	24.292	24.566	0.099739					34	26	2	0	0	0	0.31841	1	2516	2516		1.3295	0	1	15947	+		19106	9620	12656	12780	25771	25771					0.03372824126381602
SLETIGQHIP	10	Unmodified	_SLETIGQHIP_					0	0	0			REV__nc|ENSG00000149636|Q9H410-2|DSN1	REV__nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	547.795663	1093.57677	-0.17576	-9.6283E-05	-0.11275	-6.1765E-05	-0.28852	-0.00015805	547.795552989787	24.5	0.26012	24.5	24.36	24.62	0	0.028188	-0.00014992	NaN	1.3295	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15429	+		19107	9620	12656	12780							0.03372824126381602
SLFGMSALLL	10	Unmodified	_SLFGMSALLL_					0	0	0		nc|ENSG00000143252|Q99643-5|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;ENSG00000143252|ENST00000367975|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.78369140625	2	526.296453	1050.57835	0.52613	0.0002769	-4.309	-0.0022678	-3.7829	-0.0019909	526.2933123047868	64.737	0.6168	64.737	64.328	64.945	0					27	22	2	0	0	0	0.28643	1	14785	14785		24.021	0.87215	1	73934			19108	3143	12657	12781	25772	25772					0.055087418907760366
SLFILYKVC	9	Unmodified	_SLFILYKVC_					0	0	0			REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.8068237304688	2	543.306821	1084.59909	0.58238	0.00031641	2.4542	0.0013334	3.0366	0.0016498	543.308375302265	99.227	0.24214	99.27	99.154	99.396	0.042839					18	14	2	0	0	0	0.25579	1	25158	25158		4.3292	1.334	1	78139	+		19109	10569	12658	12782	25773	25773					0.06017332270425868
SLFKLHQLLF	10	Unmodified	_SLFKLHQLLF_					0	0	0			REV__ENST00000485311.1_1_3:45779316-45781222:+|nuORF	REV__ENST00000485311.1_1_3:45779316-45781222:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.18121337890625	3	415.916653	1244.72813	-0.50063	-0.00020822	1.0967	0.00045612	0.59603	0.0002479	415.9173256583207	41.278	0.32271	41.368	41.153	41.476	0.089767					15	10	2	0	0	0	0.31853	1	7547	7547		0.62683	0.17231	1	24567	+		19110	12118	12659	12783	25774	25774					0.11555430224893826
SLFLGTAIYL	10	Unmodified	_SLFLGTAIYL_					0	0	0		tr|U7SVZ6|U7SVZ6_FUSNUBranched-chainaminoacidtransporterAzlDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01399PE=4SV=1	tr|U7SVZ6|U7SVZ6_FUSNUBranched-chainaminoacidtransporterAzlDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01399PE=4SV=1	tr|U7SVZ6|U7SVZ6_FUSNUBranched-chainaminoacidtransporterAzlDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01399PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.30615234375	2	549.3157	1096.61685	0.33796	0.00018564	-0.01005	-5.5207E-06	0.32791	0.00018012	549.315777640429	102.44	0.35063	102.44	102.31	102.66	0					40	23	2	0	0	0	0.43972	1	26310	26310		6.7232	0	1	90785			19111	13632	12660	12784	25775	25775					0.07240370796921525
SLFLSRYRQRR	11	Unmodified	_SLFLSRYRQRR_					0	0	0			REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.76629638671875	3	494.619781	1480.83751	0.43857	0.00021693	-0.40324	-0.00019945	0.035326	1.7473E-05	494.9538681294143	52.765	0.065384	52.832	52.788	52.853	0.067173					4	2	2	0	0	0	0.31097	1	11022	11022		1.2148	0	1	26509	+		19112	9885	12661	12785	25776	25776					0.11632828896904357
SLGFLHCDK	9	Unmodified	_SLGFLHCDK_					0	0	0			REV__nc|ENSG00000139926|Q96NE9-2|FRMD6	REV__nc|ENSG00000139926|Q96NE9-2|FRMD6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.23046875	2	510.252577	1018.4906	0.45257	0.00023092	4.4373	0.0022642	4.8899	0.0024951	510.2552417462119	48.017	0.24371	48.097	48.004	48.248	0.080029					15	8	2	0	0	0	0.25051	1	9622	9622		7.9102	0.62092	1	57458	+		19113	9356	12662	12786	25777	25777					-0.017904589799854875
SLHPTPGVFWI	11	Unmodified	_SLHPTPGVFWI_					0	0	0			REV__ENST00000519043.5_1_3:9427277-9427385:-|nuORF	REV__ENST00000519043.5_1_3:9427277-9427385:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.7626342773438	2	627.337498	1252.66044	0.16171	0.00010145	0.37505	0.00023528	0.53677	0.00033673	627.3374448286522	76.734	0.42513	76.734	76.55	76.975	0					30	14	3	0	0	0	0.31094	1	18422	18422		1.3295	0	1	204470	+		19114	12287	12663	12787	25778	25778					0.04421980294091554
SLHQEKTK	8	Unmodified	_SLHQEKTK_					0	0	0		LTBP1|p.D812H|1|0.09|ENSG00000049323|chr2:33262737-33262737|G/C|missense_variant	LTBP1|p.D812H|1|0.09|ENSG00000049323|chr2:33262737-33262737|G/C|missense_variant	LTBP1|p.D812H|1|0.09|ENSG00000049323|chr2:33262737-33262737|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.25152587890625	2	485.769448	969.524344	-0.3697	-0.00017959	0.32395	0.00015736	-0.045753	-2.2225E-05	485.76959376526344	29.809	0.34019	29.809	29.666	30.006	0					26	16	2	0	0	0	0.3576	1	4258	4258		4.756	0	1	32258			19115	7421	12664	12788	25779	25779					0.038362857834158604
SLHQEKTK	8	Unmodified	_SLHQEKTK_					0	0	0		LTBP1|p.D812H|1|0.09|ENSG00000049323|chr2:33262737-33262737|G/C|missense_variant	LTBP1|p.D812H|1|0.09|ENSG00000049323|chr2:33262737-33262737|G/C|missense_variant	LTBP1|p.D812H|1|0.09|ENSG00000049323|chr2:33262737-33262737|G/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	485.769448	969.524344	-0.32819	-0.00015943	0.77156	0.0003748	0.44336	0.00021537	485.7698421770506	29.719	0.29936	29.795	29.651	29.95	0.075403	-0.0073498	0.00031555	NaN	4.756	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25508			19116	7421	12664	12788							0.038362857834158604
SLHVGGSNLS	10	Unmodified	_SLHVGGSNLS_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.75115966796875	2	485.751256	969.487959	-0.35767	-0.00017374	0.19291	9.3704E-05	-0.16476	-8.0035E-05	485.7513513767215	30.534	1.3546	30.534	30.243	31.597	0					160	69	4	0	0	0	0.45794	1	4554	4554		3.2813	0	1	1342700			19117	4419	12665	12789	25780	25780					0.0019940888670362256
SLHVGGSNLS	10	Unmodified	_SLHVGGSNLS_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7514953613281	2	485.751256	969.487959	-0.31246	-0.00015178	0.21264	0.00010329	-0.099818	-4.8487E-05	485.75133134372976	30.471	1.1628	30.546	30.295	31.458	0.075403					173	64	5	0	0	0	0.45794	1	4443	4443		3.2813	0	1	1084600			19118	4419	12665	12789	25781	25781					0.0019940888670362256
SLIGFIGDIFI	11	Unmodified	_SLIGFIGDIFI_					0	0	0		tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8557739257812	2	597.842082	1193.66961	0.49532	0.00029612	0.012288	7.3463E-06	0.50761	0.00030347	597.8420042044274	85.505	0.245	85.53	85.418	85.663	0.025177					16	9	2	0	0	0	0.31637	1	20992	20992		16.149	3.9084	1	56833			19119	13521	12666	12790	25782	25782					0.08052328859730551
SLIMKCFK	8	Unmodified	_SLIMKCFK_					0	0	0			REV__nc|ENSG00000172766|Q6N069-5|NAA16	REV__nc|ENSG00000172766|Q6N069-5|NAA16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.17205810546875	2	485.266642	968.51873	-0.46519	-0.00022574	-0.89939	-0.00043645	-1.3646	-0.00066219	485.26610730844396	40.794	0.49709	40.884	40.743	41.24	0.089642					27	19	2	0	0	0	0.3576	1	7511	7511		0.69038	0	1	37983	+		19120	10298	12667	12791	25783	25783					0.0332114767575149
SLIMKCFK	8	Unmodified	_SLIMKCFK_					0	0	0			REV__nc|ENSG00000172766|Q6N069-5|NAA16	REV__nc|ENSG00000172766|Q6N069-5|NAA16	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	485.266642	968.51873	-0.62758	-0.00030454	-0.62661	-0.00030407	-1.2542	-0.00060861	485.26619279771637	40.908	0.43607	40.908	40.736	41.172	0	0.012185	0.00013111	NaN	0.69038	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51072	+		19121	10298	12667	12791							0.0332114767575149
SLIPPSKRK	9	Unmodified	_SLIPPSKRK_					0	0	0		EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.3275146484375	2	513.326934	1024.63931	-0.022281	-1.1438E-05	0.18887	9.695E-05	0.16659	8.5513E-05	513.3270131853261	109.43	0.21397	109.43	109.35	109.57	0					34	23	2	0	0	0	0.30757	1	28158	28158		5.7319	3.6721	1	638690			19122	2368	12668	12792	25784	25784					0.12798014985219197
SLIPPSKRK	9	Unmodified	_SLIPPSKRK_					0	0	0		EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	513.326934	1024.63931	0.29617	0.00015203	-0.42954	-0.0002205	-0.13338	-6.8466E-05	513.3266637783381	109.47	0.2515	109.48	109.38	109.64	0.019402	0.026027	-0.00025283	NaN	5.7319	27	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435000			19123	2368	12668	12792							0.12798014985219197
SLKVDPRACF	10	Unmodified	_SLKVDPRACF_					0	0	0		ENST00000519230.1_1_5:157413535-157414072:-|nuORF;ENSG00000105401|ENST00000222005|CDC37	ENST00000519230.1_1_5:157413535-157414072:-|nuORF	ENST00000519230.1_1_5:157413535-157414072:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7784423828125	2	568.300059	1134.58556	0.19326	0.00010983	0.015676	8.9086E-06	0.20894	0.00011874	568.2999051206832	90.296	0.66995	90.296	90.138	90.808	0					32	20	2	0	0	0	0.42335	1	22695	22695		9.3831	0	1	183880			19124	1466	12669	12793	25785	25785					0.023654744911937087
SLKVPDWY	8	Unmodified	_SLKVPDWY_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2979431152344	2	504.263468	1006.51238	0.14979	7.5534E-05	-2.6842	-0.0013536	-2.5345	-0.001278	504.2622223161729	36.887	0.15089	36.887	36.833	36.983	0					6	5	2	0	0	0	0.35759	1	6369	6369		13.508	1.8676	1	14145	+		19125	9724	12670	12794	25786	25786					0.00938669040226614
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8822631835938	2	641.883136	1281.75172	0.27841	0.00017871	-0.91674	-0.00058844	-0.63833	-0.00040973	641.8823318228445	88.617	0.68144	88.649	88.253	88.934	0.032257					72	27	3	0	0	0	0.39744	1	21911	21911		4.897	4.897	1	565870			19126	7172	12671	12795	25787	25787					0.12211243991373522
SLLASWHSL	9	Unmodified	_SLLASWHSL_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7298889160156	2	507.274367	1012.53418	0.13582	6.8898E-05	-1.3393	-0.00067938	-1.2035	-0.00061048	508.2753406559911	49.784	0.20237	49.784	49.733	49.935	0					12	6	3	0	0	0	0.24635	1	10273	10273		10.824	0	1	48864	+		19127	8321	12672	12796	25788	25788					0.028414737887942465
SLLGDQASQL	10	Unmodified	_SLLGDQASQL_					0	0	0			REV__ENST00000393441.8_2_10:103313048-103313144:+|nuORF	REV__ENST00000393441.8_2_10:103313048-103313144:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2723388671875	2	516.272021	1030.52949	0.29869	0.00015421	-0.0029347	-1.5151E-06	0.29576	0.00015269	516.2720937710828	38.883	0.57564	38.97	38.744	39.32	0.086884					42	22	3	0	0	0	0.36848	1	6859	6859		15.248	1.3424	1	106520	+		19128	11702	12673	12797	25789	25789					0.01544544855391905
SLLQLDHG	8	Unmodified	_SLLQLDHG_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;ENST00000407916.2_1_7:55002927-55003332:+|nuORF	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.20379638671875	2	441.737617	881.460681	0.075578	3.3385E-05	0.34997	0.0001546	0.42555	0.00018798	441.73771215652937	36.084	0.51379	36.166	36.023	36.536	0.081711					48	20	3	0	0	0	0.35759	1	5963	5963		9.3474	0	1	110640			19129	1220	12674	12798	25790	25790					0.015209253463353889
SLLSVRVF	8	Unmodified	_SLLSVRVF_					0	0	0		ENSG00000154928|ENST00000398015|EPHB1;EPHB1|p.T584Kfs*8|1|0.08|ENSG00000154928|chr3:135166998-135166998|C/-|frameshift_variant	ENSG00000154928|ENST00000398015|EPHB1	ENSG00000154928|ENST00000398015|EPHB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	460.78240966796875	2	460.781828	919.549102	0.13207	6.0854E-05	1.6333	0.00075259	1.7654	0.00081345	460.78245614162256	109.93	0.29967	109.94	109.84	110.14	0.017235					72	44	2	0	0	0	0.53494	1	28107	28107		4.756	1.1595	1	971280			19130	3571	12675	12799	25791	25791					0.08610965656805547
SLLSVRVF	8	Unmodified	_SLLSVRVF_					0	0	0		ENSG00000154928|ENST00000398015|EPHB1;EPHB1|p.T584Kfs*8|1|0.08|ENSG00000154928|chr3:135166998-135166998|C/-|frameshift_variant	ENSG00000154928|ENST00000398015|EPHB1	ENSG00000154928|ENST00000398015|EPHB1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	460.781828	919.549102	0.052798	2.4328E-05	1.7573	0.00080974	1.8101	0.00083407	460.7825500732177	109.92	0.49438	109.92	109.77	110.26	0	-0.0096866	3.4565E-05	NaN	4.756	121	72	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2274200			19131	3571	12675	12799							0.08610965656805547
SLLTKIKSKK	10	Unmodified	_SLLTKIKSKK_					0	0	0			REV__nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	REV__nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.271484375	2	573.384448	1144.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.78	1	103.78	103.28	104.28	0								0	0	0	0.34018	1	26683	26683		0	0	1		+		19132	9761	12676	12800	25792	25792					0.18775699396360324
SLLTVHQRIH	10	Unmodified	_SLLTVHQRIH_					0	0	0		nc|ENSG00000197608|Q6ZN19|ZNF841;ZNF841|p.G767Qfs*5|1|0.14|ENSG00000197608|chr19:52065234-52065235|CC/-|frameshift_variant;ENSG00000197608|ENST00000594440|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3505249023438	2	602.351471	1202.68839	0.019036	1.1466E-05	-0.80534	-0.0004851	-0.7863	-0.00047363	602.3508848607378	30.595	0.34652	30.595	30.452	30.799	0					41	18	3	0	0	0	0.44938	2	4451	4451;4494		4.897	2.1618	1	43796			19133	5309	12677	12801	25793;25794	25793					0.09515303274179132
SLLTVHQRIH	10	Unmodified	_SLLTVHQRIH_					0	0	0		nc|ENSG00000197608|Q6ZN19|ZNF841;ZNF841|p.G767Qfs*5|1|0.14|ENSG00000197608|chr19:52065234-52065235|CC/-|frameshift_variant;ENSG00000197608|ENST00000594440|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3515014648438	2	602.351471	1202.68839	0.077418	4.6633E-05	-0.88383	-0.00053238	-0.80641	-0.00048574	602.3509224008336	30.556	0.38605	30.632	30.533	30.919	0.075403					41	23	2	0	0	0	0.44938	2	4327	4327;4369		4.897	2.1618	1	47598			19134	5309	12677	12801	25795;25796	25795					0.09515303274179132
SLLVAQRVQ	9	Unmodified	_SLLVAQRVQ_					0	0	0			REV__ENST00000492226.1_1_3:183861886-183862561:+|nuORF	REV__ENST00000492226.1_1_3:183861886-183862561:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.22125244140625	2	507.308741	1012.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.951	1	95.951	95.451	96.451	0								0	0	0	0.27613	1	24314	24314		3.9444	0	1		+		19135	12154	12678	12802	25797	25797					0.0971313808852301
SLMRWRKS	8	Unmodified	_SLMRWRKS_					0	0	0		ENST00000528173.5_1_11:46400622-46401494:+|nuORF	ENST00000528173.5_1_11:46400622-46401494:+|nuORF	ENST00000528173.5_1_11:46400622-46401494:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.8107299804688	2	532.295111	1062.57567	0.50175	0.00026708	2.2061	0.0011743	2.7079	0.0014414	532.2961341364236	67.629	0.38046	67.629	67.368	67.748	0					15	13	2	0	0	0	0.3576	1	15707	15707		4.756	0	1	91465			19136	7011	12679	12803	25798	25798					0.046883312764975926
SLMVMLTAPFY	11	Unmodified	_SLMVMLTAPFY_					0	0	0			REV__nc|ENSG00000146276|P24046-3|GABRR1	REV__nc|ENSG00000146276|P24046-3|GABRR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.320556640625	2	636.821978	1271.6294	0.69794	0.00044446	-0.28374	-0.00018069	0.4142	0.00026377	636.8217535714663	81.409	1.0015	81.409	80.902	81.903	0					58	25	3	0	0	0	0.40578	1	19777	19777		2.9952	0.90923	1	198530	+		19137	8702	12680	12804	25799	25799					0.004453228733154901
SLMYRKDFII	10	Unmodified	_SLMYRKDFII_					0	0	0		nc|ENSG00000164164|Q01804-4|OTUD4;ENST00000455611.6_1_4:146049153-146095893:-|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4	nc|ENSG00000164164|Q01804-4|OTUD4	nc|ENSG00000164164|Q01804-4|OTUD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3521728515625	2	643.352291	1284.69003	-0.11747	-7.5571E-05	0.065785	4.2323E-05	-0.05168	-3.3248E-05	643.3521604381642	24.396	0.25721	24.496	24.394	24.651	0.099739					51	24	3	0	0	0	0.46827	1	2572	2572		1.3295	0.13619	1	26239			19138	3985	12681	12805	25800	25800					0.05907176247910684
SLNKAIEDF	9	Unmodified	_SLNKAIEDF_					0	0	0		nc|ENSG00000163728|Q96N46-2|TTC14;TTC14|p.G355V|1|0.08|ENSG00000163728|chr3:180606495-180606495|G/T|missense_variant;nc|ENSG00000163728|Q96N46-3|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-2|TTC14	nc|ENSG00000163728|Q96N46-2|TTC14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7471923828125	2	518.769114	1035.52368	0.53343	0.00027673	-0.40942	-0.0002124	0.12401	6.4333E-05	518.7687213627422	47.794	0.49222	47.874	47.663	48.155	0.080029					28	18	2	0	0	0	0.25051	1	9509	9509		7.9102	0	1	76025			19139	7548	12682	12806	25801	25801					0.007334463437018712
SLPEDFYHF	9	Unmodified	_SLPEDFYHF_					0	0	0		ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7613525390625	2	577.761289	1153.50803	0.44322	0.00025608	0.087876	5.0771E-05	0.5311	0.00030685	577.7611030534902	68.302	1.1942	68.302	67.882	69.076	0					106	43	3	0	0	0	0.092418	5	15887	15838;15887;15934;15983;16103		34.102	22.608	1	408890			19140	616	12683	12807	25802;25803;25804;25805;25806	25803					-0.06258840173336466
SLPEDFYHF	9	Unmodified	_SLPEDFYHF_					0	0	0		ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2774047851562	2	577.761289	1153.50803	0.50952	0.00029438	0.080468	4.6491E-05	0.58999	0.00034087	577.7611110673165	68.242	1.2711	68.305	67.812	69.083	0.063507					103	47	3	0	0	0	0.05573	3	15757	15659;15710;15757		42.095	30.6	1	478620			19141	616	12683	12807	25807;25808;25809	25809					-0.06258840173336466
SLPEPSQPI	9	Unmodified	_SLPEPSQPI_					0	0	0		MBD6|p.H425Tfs*62|1|0.12|ENSG00000166987|chr12:57526239-57526239|C/-|frameshift_variant;MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant;ENSG00000166987|ENST00000355673|MBD6	MBD6|p.H425Tfs*62|1|0.12|ENSG00000166987|chr12:57526239-57526239|C/-|frameshift_variant	MBD6|p.H425Tfs*62|1|0.12|ENSG00000166987|chr12:57526239-57526239|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.25738525390625	2	484.258382	966.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.658	1	65.658	65.158	66.158	0								0	0	0	0.27613	1	15086	15086		3.9444	0.3479	1				19142	4194	12684	12808	25810	25810					0.017620613150143072
SLPESVPLF	9	Unmodified	_SLPESVPLF_					0	0	0		ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7721862792969	2	494.771126	987.527698	0.96809	0.00047898	-0.033065	-1.6359E-05	0.93502	0.00046262	494.77102916448223	80.389	0.56163	80.389	80.14	80.702	0					31	19	2	0	0	0	0.1182	1	19578	19578		28.487	5.3384	1	219530			19143	4587	12685	12809	25811	25811					0.0334353583742768
SLPKFYLLF	9	Unmodified	_SLPKFYLLF_					0	0	0		ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.3300170898438	2	564.328611	1126.64267	0.72673	0.00041012	1.8966	0.0010703	2.6233	0.0014804	564.3300089000511	84.373	1.0306	84.373	84.131	85.162	0					84	57	2	0	0	0	0.010235	2	20803	20766;20803		66.457	22.598	1	2169100			19144	5247	12686	12810	25812;25813	25813					0.08441265039209611
SLPLLCILF	9	Unmodified	_SLPLLCILF_					0	0	0		ENST00000366769.7_1_1:227505320-227505512:-|nuORF	ENST00000366769.7_1_1:227505320-227505512:-|nuORF	ENST00000366769.7_1_1:227505320-227505512:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8034362792969	2	509.803914	1017.59328	0.53124	0.00027083	-0.2345	-0.00011955	0.29675	0.00015128	509.8037313893562	80.9	2.9942	80.923	80.075	83.069	0.023605					311	107	4	0	0	0	0.28587	1	20010	20010		8.5933	0	1	2164500			19145	6170	12687	12811	25814	25814					0.08518233758775295
SLPLQTYIS	9	Unmodified	_SLPLQTYIS_					0	0	0			REV__ENST00000525715.5_1_11:1244314-1260349:+|nuORF	REV__ENST00000525715.5_1_11:1244314-1260349:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.22906494140625	2	511.281857	1020.54916	-0.098654	-5.044E-05	-2.9887	-0.0015281	-3.0874	-0.0015785	511.28050481896236	45.869	0.252	45.869	45.703	45.955	0					11	8	2	0	0	0	0.25579	1	9084	9084		4.3292	0	1	25155	+		19146	8835	12688	12812	25815	25815					0.039709208661292905
SLPPPVKRPR	10	Unmodified	_SLPPPVKRPR_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8566284179688	2	573.858932	1145.70331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.56	1	109.56	109.06	110.06	0								0	0	0	0.33877	1	28191	28191		1.6526	0.17072	1				19147	1245	12689	12813	25816	25816					0.13628795142176386
SLPPSSNK	8	Unmodified	_SLPPSSNK_					0	0	0			REV__ENSG00000008405|ENST00000008527|CRY1	REV__ENSG00000008405|ENST00000008527|CRY1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.2239685058594	2	415.224342	828.434132	0.43596	0.00018102	-0.89464	-0.00037148	-0.45868	-0.00019046	415.22378306078	80.252	0.63626	80.275	79.988	80.625	0.023613					60	22	3	0	0	0	0.53026	1	19357	19357		7.9102	0	1	444170	+		19148	7962	12690	12814	25817	25817					0.013052364549935191
SLPTEFPRPCF	11	Unmodified	_SLPTEFPRPCF_					0	0	0			REV__ENSG00000185448|ENST00000346193|FAM47A	REV__ENSG00000185448|ENST00000346193|FAM47A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.3181762695312	2	647.318448	1292.62234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.855	1	45.855	45.355	46.355	0								0	0	0	0.34068	1	9061	9061		0	0	1		+		19149	10671	12691	12815	25818	25818					-0.012262736828915877
SLPTNRYNVVF	11	Unmodified	_SLPTNRYNVVF_					0	0	0		ENST00000561691.5_1_15:43691337-43697409:+|nuORF	ENST00000561691.5_1_15:43691337-43697409:+|nuORF	ENST00000561691.5_1_15:43691337-43697409:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2344970703125	3	437.234822	1308.68264	-0.059013	-2.5803E-05	-0.31904	-0.00013949	-0.37805	-0.0001653	437.23452090111164	45.137	1.1304	45.137	44.909	46.039	0					102	39	4	0	0	0	0.37201	1	8861	8861		9.7643	0	1	480060			19150	7158	12692	12816	25819	25819					0.04064159971835579
SLQKEREQL	9	Unmodified	_SLQKEREQL_					0	0	0			REV__ENST00000497851.1_1_7:11075344-11076425:+|nuORF	REV__ENST00000497851.1_1_7:11075344-11076425:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2896118164062	2	565.811845	1129.60914	0.58513	0.00033107	0.54404	0.00030782	1.1292	0.0006389	565.811974017033	54.702	0.1971	54.767	54.672	54.869	0.065128					12	8	2	0	0	0	0.25281	1	11595	11595		6.7232	0.99131	1	60737	+		19151	8574	12693	12817	25820	25820					0.049516115293727125
SLQLNEFR	8	Unmodified	_SLQLNEFR_					0	0	0			REV__ENSG00000064835|ENST00000350375|POU1F1	REV__ENSG00000064835|ENST00000350375|POU1F1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2979431152344	2	503.769448	1005.52434	0.18647	9.3937E-05	0.23775	0.00011977	0.42422	0.00021371	503.7695449439845	37.171	0.30143	37.171	37.038	37.34	0					14	11	2	0	0	0	0.3576	1	6414	6414		8.5933	0	1	37012	+		19152	8095	12694	12818	25821	25821					0.021802857834245515
SLQNHNHQL	9	Unmodified	_SLQNHNHQL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40;ENSG00000155827|ENST00000389120|RNF20	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7728271484375	2	545.773054	1089.53155	0.22427	0.0001224	-0.14504	-7.9158E-05	0.079232	4.3243E-05	545.7729248452611	15.734	0.23023	15.807	15.691	15.921	0.0724					75	29	3	0	0	0	0.24767	1	550	550		13.042	0	1	90756			19153	1381	12695	12819	25822	25822					-0.009629816161577764
SLQNHNHQL	9	Unmodified	_SLQNHNHQL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40;ENSG00000155827|ENST00000389120|RNF20	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	545.773054	1089.53155	-0.37329	-0.00020373	0.35611	0.00019436	-0.017178	-9.3751E-06	545.7731536516926	15.749	0.25007	15.749	15.656	15.906	0	-0.028716	0.00035431	NaN	13.042	69	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58137			19154	1381	12695	12819							-0.009629816161577764
SLQRQLWFA	9	Unmodified	_SLQRQLWFA_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7611083984375	2	574.81419	1147.61383	-0.10714	-6.1584E-05	-0.2775	-0.00015951	-0.38464	-0.00022109	574.8140094735032	26.946	0.68373	27.032	26.73	27.414	0.0867					82	47	2	0	0	0	0.34646	1	3196	3196		0.6015	0	1	26989	+		19155	9483	12696	12820	25823	25823					0.04592540462795114
SLRDLRPW	8	Unmodified	_SLRDLRPW_					0	0	0			REV__ENSG00000253304|ENST00000521452|TMEM200B	REV__ENSG00000253304|ENST00000521452|TMEM200B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2430419921875	2	521.793258	1041.57196	-0.40395	-0.00021078	-1.2895	-0.00067286	-1.6935	-0.00088364	521.7924269204887	41.915	0.29235	42.005	41.918	42.21	0.089764					17	11	2	0	0	0	0.3576	1	7803	7803		0.79363	0	1	44427	+		19156	11082	12697	12821	25824	25824					0.05283984774246164
SLRGSSYGSL	10	Unmodified	_SLRGSSYGSL_					0	0	0		nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2	nc|ENSG00000159899|P20594-2|NPR2	nc|ENSG00000159899|P20594-2|NPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7648315429688	2	513.764363	1025.51417	0.39479	0.00020283	1.7246	0.00088602	2.1194	0.0010889	513.7649917901623	75.623	0.34964	75.667	75.44	75.79	0.044037					20	15	2	0	0	0	0.39662	1	17972	17972		12.241	3.6474	1	966980			19157	3745	12698	12822	25825	25825					0.0024367805817746557
SLSAAKRF	8	Unmodified	_SLSAAKRF_					0	0	0			REV__nc|ENSG00000151914|Q03001-13|DST	REV__nc|ENSG00000151914|Q03001-13|DST	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.2553405761719	2	440.255977	878.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.456	1	70.516	70.016	71.016	0.060562								0	0	0	0.38822	1	16391	16391		2.5775	0	1		+		19158	12297	12699	12823	25826	25826					0.05329221962892916
SLSLSRKPNE	10	Unmodified	_SLSLSRKPNE_					0	0	0		ENSG00000006695|ENST00000261643|COX10	ENSG00000006695|ENST00000261643|COX10	ENSG00000006695|ENST00000261643|COX10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.311279296875	2	565.811845	1129.60914	0.24781	0.00014021	-0.37063	-0.00020971	-0.12283	-6.9497E-05	565.8116443403778	37.82	0.74011	37.82	37.442	38.182	0					58	25	3	0	0	0	0.46827	1	6577	6577		1.3295	0	1	113180			19159	373	12700	12824	25827	25827					0.04951611529349975
SLSRHFSQRS	10	Unmodified	_SLSRHFSQRS_					0	0	0			REV__CON__Q9D312	REV__CON__Q9D312	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8155517578125	2	602.81271	1203.61087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.185	1	99.185	98.685	99.685	0								0	0	0	0.33762	1	25297	25297		2.9952	1.151	1		+	+	19160	7854	12701	12825	25828	25828					0.017206653379844283
SLSSAKHIL	9	Unmodified	_SLSSAKHIL_					0	0	0			REV__nc|ENSG00000141447|Q9BXW6-2|OSBPL1A	REV__nc|ENSG00000141447|Q9BXW6-2|OSBPL1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.73223876953125	2	478.282192	954.549831	-0.095501	-4.5676E-05	-0.037741	-1.8051E-05	-0.13324	-6.3727E-05	478.2821220542213	51.613	0.4409	51.613	51.417	51.858	0					22	14	2	0	0	0	0.25579	1	10853	10853		4.3292	0.38484	1	87406	+		19161	9399	12702	12826	25829	25829					0.07073760305854648
SLSTFQQMW	9	Oxidation (M)	_SLSTFQQM(Oxidation (M))W_		SLSTFQQM(1)W		SLSTFQQM(80)W	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2603149414062	2	572.260599	1142.50665	0.39243	0.00022457	-2.2049	-0.0012618	-1.8125	-0.0010372	572.2587709996277	67.714	0.72935	67.714	67.397	68.127	0					37	27	2	0	0	0	0.005983	2	15756	15750;15756		79.596	56.86	1	237580			19162	827;5239;1566	12703	12827	25830;25831	25831		46			-0.05890797533743353
SLSTFQQMW	9	Oxidation (M)	_SLSTFQQM(Oxidation (M))W_		SLSTFQQM(1)W		SLSTFQQM(64)W	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.2609252929688	2	572.260599	1142.50665	0.62289	0.00035646	-0.27994	-0.0001602	0.34295	0.00019626	572.2602853225147	67.595	0.60696	67.659	67.438	68.045	0.063507					30	20	2	0	0	0	0.012041	1	15546	15546		63.961	34.879	1	208480			19163	827;5239;1566	12703	12827	25832	25832		46			-0.05890797533743353
SLTAPSQTMVI	11	Unmodified	_SLTAPSQTMVI_					0	0	0			REV__nc|ENSG00000244437|P01624|IGKV3-15	REV__nc|ENSG00000244437|P01624|IGKV3-15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3064575195312	2	574.305007	1146.59546	-0.13981	-8.0293E-05	3.3637	0.0019318	3.2239	0.0018515	574.3069087402256	30.396	0.32854	30.396	30.221	30.55	0					29	18	2	0	0	0	0.40693	2	4412	4412;4429		2.7352	0	1	26600	+		19164	12892	12704	12828	25833;25834	25833					0.028026177059246038
SLTAPSQTMVI	11	Unmodified	_SLTAPSQTMVI_					0	0	0			REV__nc|ENSG00000244437|P01624|IGKV3-15	REV__nc|ENSG00000244437|P01624|IGKV3-15	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	574.305007	1146.59546	-0.13981	-8.0293E-05	3.3637	0.0019318	3.2239	0.0018515	574.3069087402256	30.396	0.32854	30.396	30.221	30.55	0	-0.016585	0.00018021	NaN	2.7352	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26600	+		19165	12892	12704	12828							0.028026177059246038
SLVFWRRKWLR	11	Unmodified	_SLVFWRRKWLR_					0	0	0			REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3099975585938	3	516.308767	1545.90447	0.50444	0.00026045	2.0362	0.0010513	2.5406	0.0013117	516.6441336586796	99.85	0.50148	99.85	99.807	100.31	0					51	26	3	0	0	0	0.4185	1	25500	25500		0.094841	0	1	257890	+		19166	8546	12705	12829	25835	25835					0.15335484178672232
SLVKKLKKKKG	11	Unmodified	_SLVKKLKKKKG_					0	0	0		SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant;nc|ENSG00000120693|O15198-2|SMAD9;ENSG00000120693|ENST00000379826|SMAD9	SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.9421997070312	2	628.942465	1255.87038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.89	1	31.964	31.464	32.464	0.073782								0	0	0	0.34212	1	4736	4736		0	0	1				19167	2129	12706	12830	25836	25836					0.2526764296703732
SLVLEREQKLR	11	Unmodified	_SLVLEREQKLR_					0	0	0			REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF	REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.6082763671875	3	457.608659	1369.80415	0.23022	0.00010535	-0.8339	-0.0003816	-0.60368	-0.00027625	457.60826892319983	94.226	2.1515	94.265	93.255	95.407	0.038086					178	93	3	0	0	0	0.40824	2	23468	23468;23511		2.4348	1.1051	1	691320	+		19168	9845	12707	12831	25837;25838	25837					0.1340378233435331
SLVLEREQKLR	11	Unmodified	_SLVLEREQKLR_					0	0	0			REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF	REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	457.608659	1369.80415	0.51949	0.00023773	-0.93041	-0.00042577	-0.41092	-0.00018804	457.6081646315243	93.999	1.9431	93.999	93.462	95.405	0	-0.13281	-7.0079E-05	NaN	2.4348	187	87	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658680	+		19169	9845	12707	12831							0.1340378233435331
SLVLIMWL	8	Unmodified	_SLVLIMWL_					0	0	0		tr|U7SSH6|U7SSH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01271PE=4SV=1	tr|U7SSH6|U7SSH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01271PE=4SV=1	tr|U7SSH6|U7SSH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01271PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.79058837890625	2	487.790807	973.56706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.823	1	77.823	77.323	78.323	0								0	0	0	0.38822	1	18800	18800		0.79363	0	1				19170	13555	12708	12832	25839	25839					0.07921964587285402
SLVPPLLLYI	10	Unmodified	_SLVPPLLLYI_					0	0	0			REV__OR51L1|p.N290S|1|0.09|ENSG00000176798|chr11:4999851-4999851|A/G|missense_variant	REV__OR51L1|p.N290S|1|0.09|ENSG00000176798|chr11:4999851-4999851|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3596801757812	2	564.357368	1126.70018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.966	1	63.039	62.539	63.539	0.072701								0	0	0	0.33681	1	14121	14121		3.9444	2.1002	1		+		19171	12942	12709	12833	25840	25840					0.14190107244780847
SLWDIPINS	9	Unmodified	_SLWDIPINS_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2904663085938	2	522.771657	1043.52876	0.18456	9.6482E-05	0.52999	0.00027706	0.71455	0.00037355	522.7720064381509	52.803	0.44473	52.803	52.616	53.06	0					24	15	2	0	0	0	0.23598	1	11140	11140		15.847	3.3156	1	81717			19172	3299	12710	12834	25841	25841					0.008737502063240754
SLWKPLNY	8	Unmodified	_SLWKPLNY_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7789001464844	2	510.779285	1019.54402	-0.12262	-6.2631E-05	-0.58061	-0.00029656	-0.70323	-0.0003592	510.77900004516204	28.502	0.39393	28.585	28.399	28.793	0.082134					36	21	2	0	0	0	0.53423	2	3706	3706;3752		5.2307	0	1	32347			19173	2061	12711	12835	25842;25843	25842					0.035026617941639415
SLWLFRQHH	9	Unmodified	_SLWLFRQHH_					0	0	0		ENSG00000185561|ENST00000330676|TLCD2	ENSG00000185561|ENST00000330676|TLCD2	ENSG00000185561|ENST00000330676|TLCD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.885498046875	3	408.552597	1222.63596	0.1836	7.5012E-05	-2.8073	-0.0011469	-2.6237	-0.0010719	408.88513842442745	33.833	0.9126	33.833	33.464	34.377	0					48	34	2	0	0	0	0.3354	1	5428	5428		1.0715	0	1	27072			19174	5031	12712	12836	25844	25844					0.03354764931214049
SLWSFNYFF	9	Unmodified	_SLWSFNYFF_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1893615722656	3	404.190442	1209.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.262	1	79.288	78.788	79.788	0.026436								0	0	0	0.28199	1	19078	19078		2.7352	0.23671	1				19175	4783	12713	12837	25845	25845					-0.046896594140207526
SLWSLHVSLF	10	Unmodified	_SLWSLHVSLF_					0	0	0			REV__nc|ENSG00000158941|Q8N163-2|CCAR2	REV__nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.82275390625	2	594.824224	1187.63389	0.15607	9.2833E-05	0.17291	0.00010285	0.32898	0.00019568	594.8242217582659	73.395	1.0806	73.448	73.266	74.346	0.052574					93	41	4	0	0	0	0.38912	1	17428	17428		13.042	2.9685	1	1964100	+		19176	9816	12714	12838	25846	25846					0.04758291402731629
SLYASQAGTLW	11	Unmodified	_SLYASQAGTLW_					0	0	0		nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4	nc|ENSG00000145113|Q99102-2|MUC4	nc|ENSG00000145113|Q99102-2|MUC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.844970703125	2	598.800946	1195.58734	0.77002	0.00046109	-0.61599	-0.00036886	0.15403	9.2232E-05	598.8003577027124	84.426	0.59109	84.426	84.338	84.929	0					71	36	3	0	0	0	0.25034	1	20849	20849		36.506	4.2007	1	1270000			19177	7522	12715	12839	25847	25847					-0.0026319321918890637
SLYEFIFVT	9	Unmodified	_SLYEFIFVT_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.813232421875	2	559.792058	1117.56956	0.76173	0.00042641	-3.4633	-0.0019387	-2.7016	-0.0015123	559.7899141408024	84.129	0.2524	84.129	83.962	84.215	0					21	8	3	0	0	0	0.18364	1	20715	20715		20.454	5.6154	1	146370	+		19178	8541	12716	12840	25848	25848					0.01548091525955897
SLYGLDILQR	10	Unmodified	_SLYGLDILQR_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-3|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.78369140625	2	589.332413	1176.65027	0.52733	0.00031077	-2.2096	-0.0013022	-1.6823	-0.00099144	589.3310040655167	69.629	0.38292	69.69	69.473	69.856	0.061584					16	13	2	0	0	0	0.31803	1	16100	16100		3.2813	0.97858	1	110870	+		19179	9139	12717	12841	25849	25849					0.06901372568859188
SLYLNILEL	9	Unmodified	_SLYLNILEL_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8152465820312	2	539.313158	1076.61176	0.26102	0.00014077	0.99659	0.00053748	1.2576	0.00067825	539.3136560562189	86.268	0.68159	86.268	85.931	86.613	0					46	25	3	0	0	0	0.11198	1	21328	21328		29.841	3.5724	1	126750	+		19180	8784	12718	12842	25850	25850					0.07652066934338109
SLYVMHLFL	9	Unmodified	_SLYVMHLFL_					0	0	0			REV__ENST00000367941.6_1_6:132781183-132781276:-|nuORF	REV__ENST00000367941.6_1_6:132781183-132781276:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2811889648438	2	561.804445	1121.59434	0.28898	0.00016235	-3.519	-0.001977	-3.23	-0.0018146	561.802202619395	78.721	0.59142	78.721	78.423	79.015	0					25	20	2	0	0	0	0.2491	1	19028	19028		8.5933	1.304	1	65482	+		19181	11570	12719	12843	25851	25851					0.03840448127698437
SLYVMHLFL	9	Unmodified	_SLYVMHLFL_					0	0	0			REV__ENST00000367941.6_1_6:132781183-132781276:-|nuORF	REV__ENST00000367941.6_1_6:132781183-132781276:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	561.804445	1121.59434	0.40323	0.00022653	-4.0266	-0.0022622	-3.6234	-0.0020357	561.8019161779774	78.87	0.20311	78.9	78.787	78.99	0.030159	0.089595	-0.00041299	NaN	4.756	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41277	+		19182	11570	12719	12843							0.03840448127698437
SMAFFRCL	8	Unmodified	_SMAFFRCL_					0	0	0			REV__ENSG00000004139|ENST00000585482|SARM1	REV__ENSG00000004139|ENST00000585482|SARM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.73199462890625	2	487.732966	973.451379	-0.34417	-0.00016787	-0.45669	-0.00022274	-0.80087	-0.00039061	487.7326689610565	40.662	0.90993	40.751	40.518	41.428	0.089645					76	33	3	0	0	0	0.53494	1	7543	7543		4.756	1.8668	1	305250	+		19183	7924	12720	12844	25852	25852					-0.03640882535205492
SMCLPQLCSHI	11	Unmodified	_SMCLPQLCSHI_					0	0	0		ENST00000375807.7_1_9:91934628-91940356:+|nuORF;nc|ENSG00000187742|Q96T21-2|SECISBP2	ENST00000375807.7_1_9:91934628-91940356:+|nuORF	ENST00000375807.7_1_9:91934628-91940356:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.2857055664062	2	616.285237	1230.55592	-0.6687	-0.00041211	1.4165	0.000873	0.74784	0.00046088	616.2860352433848	27.21	0.24633	27.21	27.097	27.344	0					27	15	2	0	0	0	0.41422	1	3510	3510		1.0715	0.46996	1	24062			19184	6242	12721	12845	25853	25853					-0.05013548840815929
SMDPLPVFL	9	Unmodified	_SMDPLPVFL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7668151855469	2	509.767529	1017.5205	0.57205	0.00029161	-0.80646	-0.00041111	-0.2344	-0.00011949	509.76705146585755	93.003	0.36361	93.003	92.823	93.187	0					18	13	2	0	0	0	0.17247	1	23435	23435		21.747	10.106	1	55482			19185	3160	12722	12846	25854	25854					0.012444799653621885
SMDPLPVFL	9	Unmodified	_SMDPLPVFL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.767529	1017.5205	0.52427	0.00026726	-0.017879	-9.1139E-06	0.50639	0.00025814	509.76759795800007	92.992	0.3878	93.029	92.808	93.195	0.037361	0.013422	0.00055798	NaN	21.747	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59263			19186	3160	12722	12846							0.012444799653621885
SMDPLPVFL	9	Oxidation (M)	_SM(Oxidation (M))DPLPVFL_		SM(1)DPLPVFL		SM(42)DPLPVFL	0	0	1		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.76513671875	2	517.764986	1033.51542	0.51425	0.00026626	0.21006	0.00010876	0.72431	0.00037502	517.7649456627048	85.808	0.65846	85.833	85.599	86.258	0.025169					53	23	3	0	0	0	0.05573	1	21068	21068		42.095	13.608	1	575880			19187	3160	12722	12847	25855	25855		204			1.7610275335755432E-06
SMDPLPVFL	9	Oxidation (M)	_SM(Oxidation (M))DPLPVFL_					0	0	1		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	517.764986	1033.51542	0.4081	0.0002113	0.30941	0.0001602	0.7175	0.0003715	517.7649143826018	85.84	0.60057	85.84	85.579	86.179	0	0.0031198	4.974E-05	NaN	42.095	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584350			19188	3160	12722	12847				204			1.7610275335755432E-06
SMERSSENTY	10	Unmodified	_SMERSSENTY_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2504272460938	2	602.25096	1202.48737	0.59233	0.00035673	-0.89487	-0.00053894	-0.30254	-0.00018221	602.2503748233091	96.826	0.77957	96.826	96.552	97.331	0					115	37	6	0	0	0	0.44727	1	24581	24581		5.2969	0.76802	1	992460			19189	5353	12723	12848	25856	25856					-0.10577798615304346
SMETLLDLC	9	Unmodified	_SMETLLDLC_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7570190429688	2	512.738111	1023.46167	0.12261	6.2868E-05	1.6679	0.00085517	1.7905	0.00091804	513.2408932314977	35.435	0.68265	35.435	34.854	35.537	0					31	23	2	0	0	0	0.25281	1	5873	5873		6.7232	0.99131	1	31695	+		19190	10400	12724	12849	25857	25857					-0.04912364391293522
SMFGSITSFIL	11	Unmodified	_SMFGSITSFIL_					0	0	0			REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.808349609375	2	601.809925	1201.6053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.528	1	76.528	76.028	77.028	0								0	0	0	0.24457	1	18404	18404		21.537	0.66577	1		+		19191	11603	12725	12850	25858	25858					0.012558057112983079
SMFMMKMMM	9	Unmodified	_SMFMMKMMM_					0	0	0			REV__ENST00000505125.5_1_4:54249946-54250012:+|nuORF	REV__ENST00000505125.5_1_4:54249946-54250012:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2322387695312	2	584.231715	1166.44888	0.76557	0.00044727	0.23701	0.00013847	1.0026	0.00058574	584.2317192827953	98.171	0.65388	98.171	97.929	98.583	0					121	35	5	0	0	0	0.33704	1	24983	24983		1.8442	0.36234	1	793650	+		19192	12221	12726	12851	25859	25859					-0.1276888164270531
SMKSVRVQ	8	Unmodified	_SMKSVRVQ_					0	0	0			REV__ENST00000339121.9_1_7:120596408-120596513:+|nuORF	REV__ENST00000339121.9_1_7:120596408-120596513:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2419738769531	2	467.760569	933.506586	0.2749	0.00012859	0.36858	0.00017241	0.64348	0.00030099	467.76065643586793	65.733	0.62709	65.8	65.344	65.971	0.066872					28	24	2	0	0	0	0.35759	1	14893	14893		9.3474	2.0582	1	67368	+		19193	11453	12727	12852	25860	25860					0.03717247256918199
SMLVSYRCR	9	Unmodified	_SMLVSYRCR_					0	0	0		GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179	GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.780029296875	2	557.778436	1113.54232	0.29681	0.00016555	1.8423	0.0010276	2.1391	0.0011932	557.7799624331745	51.89	1.8734	51.89	51.239	53.113	0					206	65	5	0	0	0	0.15282	1	10906	10906		24.021	3.5669	1	2896500			19194	5756	12728	12853	25861	25861					-0.009910385577313718
SMPIPTKVP	9	Unmodified	_SMPIPTKVP_					0	0	0			REV__ENSG00000182771|ENST00000327946|GRID1	REV__ENSG00000182771|ENST00000327946|GRID1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2613220214844	2	485.275521	968.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.6	1	32.674	32.174	33.174	0.07378								0	0	0	0.27427	1	4948	4948		4.3292	0	1		+		19195	10576	12729	12854	25862	25862					0.05096186202251829
SMQMKAPVTL	10	Unmodified	_SMQMKAPVTL_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3036499023438	2	553.290845	1104.56714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.939	1	41.029	40.529	41.529	0.089645								0	0	0	0.33443	1	7448	7448		6.7232	0	1				19196	4883	12730	12855	25863	25863					0.019035965249941
SMRFEKCGMS	10	Unmodified	_SMRFEKCGMS_					0	0	0		ENST00000498087.5_1_9:4635336-4666491:-|nuORF;ENST00000485981.5_1_9:4635336-4666313:-|nuORF	ENST00000498087.5_1_9:4635336-4666491:-|nuORF	ENST00000498087.5_1_9:4635336-4666491:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.2549438476562	2	588.253936	1174.49332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.677	1	67.677	67.177	68.177	0								0	0	0	0.33565	1	15702	15702		5.2969	1.7004	1				19197	6780	12731	12856	25864	25864					-0.08694694908990641
SMRQRLAEL	9	Unmodified	_SMRQRLAEL_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3035278320312	2	552.303133	1102.59171	0.64567	0.0003566	-0.065004	-3.5902E-05	0.58066	0.0003207	552.30335415793	100.59	0.42303	100.63	100.44	100.87	0.042839					40	25	2	0	0	0	0.13341	2	25571	25571;25634		26.268	2.2476	1	46867			19198	2867	12732	12857	25865;25866	25865					0.044519927227156586
SMSEGSHLIW	10	Unmodified	_SMSEGSHLIW_					0	0	0			REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7647705078125	2	573.766049	1145.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.838	1	59.838	59.338	60.338	0								0	0	0	0.33215	1	13307	13307		9.3831	0.78985	1		+		19199	12447	12733	12858	25867	25867					-0.04939395159453852
SMSSCSGFSTF	11	Unmodified	_SMSSCSGFSTF_					0	0	0			REV__WDR59|p.S788F|1|0.31|ENSG00000103091|chr16:74887739-74887739|G/A|missense_variant	REV__WDR59|p.S788F|1|0.31|ENSG00000103091|chr16:74887739-74887739|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2559204101562	2	570.720449	1139.42635	0.2959	0.00016888	2.9804	0.001701	3.2763	0.0018699	570.722403033958	95.962	0.61763	96.002	95.688	96.305	0.039772					45	29	2	0	0	0	0.30289	1	24213	24213		13.042	4.2971	1	99901	+		19200	13334	12734	12859	25868	25868					-0.13779026919110038
SMSSITSDLF	10	Unmodified	_SMSSITSDLF_					0	0	0			REV__ENST00000460683.1_2_3:122439928-122440150:+|nuORF	REV__ENST00000460683.1_2_3:122439928-122440150:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.313232421875	2	544.25244	1086.49033	0.045224	2.4613E-05	-2.6074	-0.0014191	-2.5622	-0.0013945	544.2510611704113	73.041	0.40101	73.041	72.883	73.284	0					28	13	3	0	0	0	0.25999	1	17366	17366		36.127	3.3413	1	186100	+		19201	11959	12735	12860	25869	25869					-0.04945923490527093
SMTRYFYL	8	Oxidation (M)	_SM(Oxidation (M))TRYFYL_		SM(1)TRYFYL		SM(54)TRYFYL	0	0	1		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7601928710938	2	548.760235	1095.50592	0.48486	0.00026607	-0.13094	-7.1852E-05	0.35393	0.00019422	548.7602283514458	55.78	0.5691	55.78	55.525	56.094	0					44	19	3	0	0	0	0.10404	1	12057	12057		53.833	27.492	1	286780			19202	5259	12736	12861	25870	25870		297			-0.038015921827991406
SMTRYFYL	8	Unmodified	_SMTRYFYL_					0	0	0		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.305908203125	2	540.762778	1079.511	0.41535	0.00022461	-0.026289	-1.4216E-05	0.38906	0.00021039	540.7630088201188	62.434	0.54385	62.434	62.149	62.693	0					31	19	2	0	0	0	0.3528	1	14103	14103		19.257	3.4098	1	162190			19203	5259	12736	12862	25871	25871					-0.025572883201675722
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_		SM(1)TRYFYLF		SM(64)TRYFYLF	0	0	1		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.2945556640625	2	622.294442	1242.57433	-0.073365	-4.5654E-05	0.22407	0.00013943	0.1507	9.378E-05	622.2946837149768	71.632	0.75121	71.632	71.386	72.137	0					92	26	5	0	0	0	0.012041	1	16909	16909		63.961	33.324	1	3628600			19204	5259	12737	12863	25872	25872		297			-0.03725347602949114
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_		SM(1)TRYFYLF		SM(64)TRYFYLF	0	0	1		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2945556640625	2	622.294442	1242.57433	0.056784	3.5336E-05	0.16088	0.00010011	0.21766	0.00013545	622.294650174298	71.525	0.71533	71.583	71.318	72.033	0.058578					82	25	5	0	0	0	0.012041	2	16732	16690;16732		63.961	37.077	1	4008800			19205	5259	12737	12863	25873;25874	25874		297			-0.03725347602949114
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_		SM(1)TRYFYLF		SM(64)TRYFYLF	0	0	1		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.294677734375	2	622.294442	1242.57433	-0.044814	-2.7887E-05	0.39557	0.00024616	0.35076	0.00021827	622.2947339666262	72.375	2.1025	72.431	71.921	74.023	0.055939					221	76	4	0	0	0	0.012041	6	16963	16923;16963;17005;17053;17101;17154		63.961	42.214	1	4788500			19206	5259	12737	12863	25875;25876;25877;25878;25879;25880	25876		297			-0.03725347602949114
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_					0	0	1		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	622.294442	1242.57433	-0.33345	-0.00020751	0.63311	0.00039398	0.29965	0.00018647	622.2949226673463	72.456	2.2237	72.456	71.948	74.171	0	0.012366	0.00012556	NaN	63.961	227	79	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3842400			19207	5259	12737	12863				297			-0.03725347602949114
SMTRYFYLF	9	Unmodified	_SMTRYFYLF_					0	0	0		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.2969970703125	2	614.296985	1226.57942	-0.0070368	-4.3227E-06	-1.1536	-0.00070862	-1.1606	-0.00071295	614.2970512860984	76.451	1.1071	76.451	76.173	77.28	0					92	41	3	0	0	0	0.0093779	4	18408	18358;18408;18454;18508		69.105	24.698	1	2643300			19208	5259	12737	12864	25881;25882;25883;25884	25882					-0.024810437403175456
SMTRYFYLF	9	Unmodified	_SMTRYFYLF_					0	0	0		nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000196954|P49662-2|CASP4	nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.2969360351562	2	614.296985	1226.57942	0.068854	4.2297E-05	-2.101	-0.0012906	-2.0321	-0.0012483	614.29693379099	76.386	1.1809	76.426	75.975	77.156	0.03923					140	51	5	0	0	0	0.0093779	4	18206	18206;18254;18296;18300		69.105	24.698	1	2558800			19209	5259	12737	12864	25885;25886;25887;25888	25885					-0.024810437403175456
SMWFLWNIF	9	Unmodified	_SMWFLWNIF_					0	0	0		nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3042602539062	2	622.30207	1242.58959	0.2363	0.00014705	2.2017	0.0013701	2.438	0.0015172	622.3035649749546	92.631	0.33404	92.631	92.379	92.713	0					18	12	2	0	0	0	0.2125	1	23313	23313		17.113	6.3134	1	73589			19210	7472	12738	12865	25889	25889					-0.022004360150958746
SMWFLWNIF	9	Unmodified	_SMWFLWNIF_					0	0	0		nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.80419921875	2	622.30207	1242.58959	0.35199	0.00021904	0.74497	0.0004636	1.097	0.00068264	622.3023351392062	92.54	0.33151	92.576	92.475	92.807	0.036522					18	11	2	0	0	0	0.2125	1	23120	23120		17.113	7.039	1	70541			19211	7472	12738	12865	25890	25890					-0.022004360150958746
SNFTWFAVFV	10	Unmodified	_SNFTWFAVFV_					0	0	0			REV__ENST00000498152.1_1_3:113344816-113344903:+|nuORF	REV__ENST00000498152.1_1_3:113344816-113344903:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.3033447265625	2	609.303124	1216.5917	0.052235	3.1827E-05	1.236	0.00075311	1.2883	0.00078494	609.3030499722244	72.226	0.58416	72.226	71.998	72.582	0					48	19	4	0	0	0	0.39662	1	17130	17130		12.241	2.1667	1	533390	+		19212	12195	12739	12866	25891	25891					-0.007936840056345318
SNFTWFAVFV	10	Unmodified	_SNFTWFAVFV_					0	0	0			REV__ENST00000498152.1_1_3:113344816-113344903:+|nuORF	REV__ENST00000498152.1_1_3:113344816-113344903:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3031005859375	2	609.303124	1216.5917	0.31087	0.00018941	0.77046	0.00046944	1.0813	0.00065885	609.3026891727502	72.176	0.58788	72.232	71.95	72.538	0.055931					50	19	4	0	0	0	0.39662	1	16947	16947		12.241	2.1667	1	592460	+		19213	12195	12739	12866	25892	25892					-0.007936840056345318
SNIFSKHVDF	10	Unmodified	_SNIFSKHVDF_					0	0	0			REV__nc|ENSG00000135541|Q8N157-2|AHI1	REV__nc|ENSG00000135541|Q8N157-2|AHI1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3194580078125	2	597.301113	1192.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.64	1	72.695	72.195	73.195	0.055939								0	0	0	0.33565	1	17057	17057		5.2969	0	1		+		19214	9210	12740	12867	25893	25893					-0.00091773499343617
SNISVYTFVSM	11	Unmodified	_SNISVYTFVSM_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.806640625	2	624.302464	1246.59037	0.29052	0.00018137	1.2214	0.0007625	1.5119	0.00094387	624.8047554028202	93.338	0.49757	93.338	93.101	93.599	0					29	19	3	0	0	0	0.37887	1	23514	23514		8.9762	1.3673	1	112230	+		19215	9321	12741	12868	25894	25894					-0.02305686156705633
SNISVYTFVSM	11	Unmodified	_SNISVYTFVSM_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.3037109375	2	624.302464	1246.59037	0.38174	0.00023832	0.54133	0.00033796	0.92308	0.00057628	624.3029737625752	93.342	0.40372	93.379	93.178	93.581	0.037369					28	17	2	0	0	0	0.37887	2	23335	23335;23384		8.9762	2.2531	1	100390	+		19216	9321	12741	12868	25895;25896	25895					-0.02305686156705633
SNISVYTFVSM	11	Unmodified	_SNISVYTFVSM_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8049926757812	2	624.302464	1246.59037	0.38174	0.00023832	0.54133	0.00033796	0.92308	0.00057628	624.3029737625752	93.342	0.40372	93.379	93.178	93.581	0.037369					28	17	2	0	0	0	0.31076	1	23402	23402		3.8763	0.59502	1	100390	+		19217	9321	12741	12868	25897	25897					-0.02305686156705633
SNIYFRILP	9	Unmodified	_SNIYFRILP_					0	0	0		tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8170776367188	2	561.818941	1121.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.942	1	98.942	98.442	99.442	0								0	0	0	0.28631	1	25224	25224		1.8442	0	1				19218	13599	12742	12869	25898	25898					0.06738308748322197
SNKECSFLH	9	Unmodified	_SNKECSFLH_					0	0	0		ENSG00000187959|ENST00000344935|CPSF4L	ENSG00000187959|ENST00000344935|CPSF4L	ENSG00000187959|ENST00000344935|CPSF4L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7457275390625	2	532.745116	1063.47568	-0.08495	-4.5257E-05	-0.09604	-5.1165E-05	-0.18099	-9.6421E-05	532.7450564083387	30.364	0.75197	30.364	30.117	30.869	0					57	39	2	0	0	0	0.33704	1	4488	4488		1.8442	1.1539	1	21770			19219	5139	12743	12870	25899	25899					-0.05351950847966691
SNKEIEDE	8	Unmodified	_SNKEIEDE_					0	0	0		ENST00000438284.2_1_3:11302213-11302318:+|nuORF	ENST00000438284.2_1_3:11302213-11302318:+|nuORF	ENST00000438284.2_1_3:11302213-11302318:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.74603271484375	2	482.216911	962.41927	-0.065888	-3.1772E-05	-1.0181	-0.00049096	-1.084	-0.00052273	482.2165349194954	36.491	0.75766	36.491	36.184	36.942	0					36	28	2	0	0	0	0.35759	1	6149	6149		12.532	0	1	29748			19220	6515	12744	12871	25900	25900					-0.06344300203659259
SNNDQDNKRD	10	Unmodified	_SNNDQDNKRD_					0	0	0			REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2612915039062	2	603.260705	1204.50686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.782	1	27.864	27.364	28.364	0.082134								0	0	0	0.34018	1	3518	3518		0	0	1		+		19221	9028	12745	12872	25901	25901					-0.08721706280198305
SNNFDEEDDM	10	Unmodified	_SNNFDEEDDM_					0	0	0			REV__ENST00000441778.6_1_4:16504268-16507504:-|nuORF	REV__ENST00000441778.6_1_4:16504268-16507504:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.8072509765625	2	608.208957	1214.40336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.025	1	41.115	40.615	41.615	0.089645								0	0	0	0.34018	1	7474	7474		0	0	1		+		19222	10185	12746	12873	25902	25902					-0.19526374502879662
SNPEQDLKL	9	Unmodified	_SNPEQDLKL_					0	0	0		ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA;ENSG00000166351|ENST00000299443|POTED;ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2;nc|ENSG00000187537|Q6S5H5-2|POTEG;ENSG00000222036|ENST00000547889|POTEM;ENSG00000187537|ENST00000547848|POTEG;ENSG00000183206|ENST00000358970|POTEC;nc|ENSG00000278522|A0JP26-3|POTEB3;ENSG00000198062|ENST00000343518|POTEH;ENSG00000278522|ENST00000611217|POTEB3	ENSG00000196604|ENST00000409914|POTEF;ENSG00000233917|ENST00000439682|POTEB	ENSG00000196604|ENST00000409914|POTEF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2717895507812	2	522.272021	1042.52949	-0.14648	-7.6504E-05	-0.32136	-0.00016784	-0.46785	-0.00024434	522.271806822283	28.227	0.98715	28.227	27.983	28.971	0					113	51	3	0	0	0	0.27929	1	3827	3827		9.3831	0	1	422070			19223	5239;5615	12747	12874	25903	25903					0.009925448553758542
SNPRDWLNM	9	Unmodified	_SNPRDWLNM_					0	0	0		nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC;nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENSG00000163689|ENST00000482387|CFAP20DC	nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2645263671875	2	566.76384	1131.51313	-0.18033	-0.0001022	0.35872	0.00020331	0.17839	0.00010111	566.7640169616025	30.767	0.86251	30.767	30.55	31.412	0					75	42	3	0	0	0	0.33978	1	4587	4587		1.4819	0	1	76920			19224	3937	12748	12875	25904	25904					-0.0473685958236274
SNQIYSFF	8	Unmodified	_SNQIYSFF_					0	0	0		tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.3054504394531	2	503.23745	1004.46035	0.46703	0.00023503	-0.16962	-8.536E-05	0.29741	0.00014967	503.23727648768977	71.101	0.49638	71.16	70.967	71.464	0.058578					23	17	2	0	0	0	0.35492	1	16585	16585		16.942	0	1	99006			19225	13480	12749	12876	25905	25905					-0.041704943735112465
SNRGLHWVR	9	Unmodified	_SNRGLHWVR_					0	0	0			REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF	REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8073120117188	2	562.807231	1123.59991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.093	1	14.093	13.593	14.593	0								0	0	0	0.29233	1	316	316		0.6015	0	1		+		19226	11841	12750	12877	25906	25906					0.0430530775436182
SNRLAEGGAL	10	Unmodified	_SNRLAEGGAL_					0	0	0			REV__ENST00000607510.1_1_3:44379447-44379723:-|nuORF	REV__ENST00000607510.1_1_3:44379447-44379723:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7754821777344	2	494.26453	986.514508	0.086475	4.2742E-05	-0.74116	-0.00036633	-0.65468	-0.00032359	494.26420026197445	33.685	0.25495	33.685	33.548	33.803	0					11	8	2	0	0	0	0.46208	1	5396	5396		2.4985	0.19575	1	25719	+		19227	12643	12751	12878	25907	25907					0.020710977780595385
SNSSTSIWL	9	Unmodified	_SNSSTSIWL_					0	0	0		ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENSG00000103742|ENST00000352385|IGDCC4	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.76910400390625	2	497.745639	993.476725	-0.06889	-3.429E-05	0.24372	0.00012131	0.17483	8.7022E-05	497.7455731339508	40.119	0.45046	40.119	39.924	40.375	0					28	15	3	0	0	0	0.25579	1	7275	7275		4.3292	0.38484	1	53097			19228	1386	12752	12879	25908	25908					-0.020274132074177942
SNSSTSIWL	9	Unmodified	_SNSSTSIWL_					0	0	0		ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENSG00000103742|ENST00000352385|IGDCC4	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	497.745639	993.476725	0.048002	2.3893E-05	-0.010305	-5.1293E-06	0.037697	1.8763E-05	497.7454910210106	40.053	0.38358	40.141	39.93	40.314	0.088562	0.010803	-0.00010781	NaN	4.3292	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37666			19229	1386	12752	12879							-0.020274132074177942
SNTFNAEPTL	10	Unmodified	_SNTFNAEPTL_					0	0	0			REV__EIF2B5|p.D329N|1|0.1|ENSG00000145191|chr3:184140559-184140559|G/A|missense_variant	REV__EIF2B5|p.D329N|1|0.1|ENSG00000145191|chr3:184140559-184140559|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3032836914062	2	547.261653	1092.50875	0.011041	6.042E-06	-2.0934	-0.0011457	-2.0824	-0.0011396	547.2603790682838	33.017	0.24167	33.092	32.992	33.234	0.074322					11	9	2	0	0	0	0.31838	1	5066	5066		1.4819	0.68827	1	16178	+		19230	7909	12753	12880	25909	25909					-0.03380045524295383
SNVLFHSLF	9	Unmodified	_SNVLFHSLF_					0	0	0		ENSG00000197584|ENST00000452583|KCNMB2	ENSG00000197584|ENST00000452583|KCNMB2	ENSG00000197584|ENST00000452583|KCNMB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7417602539062	2	532.282192	1062.54983	-0.53398	-0.00028423	-0.58628	-0.00031207	-1.1203	-0.0005963	532.2817229584814	41.621	0.53133	41.621	41.407	41.938	0					28	19	2	0	0	0	0.24929	1	7758	7758		9.3831	0	1	76876			19231	5306	12754	12881	25910	25910					0.02105760305835247
SNWTSNFII	9	Unmodified	_SNWTSNFII_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4;ENST00000572485.5_1_17:7188262-7189945:+|nuORF	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2699584960938	2	541.269281	1080.52401	0.83928	0.00045428	0.42498	0.00023003	1.2643	0.00068431	541.2695439747571	84.623	0.45833	84.623	84.471	84.929	0					50	22	3	0	0	0	0.14091	2	20893	20851;20893		25.399	0	1	833290			19232	4851	12755	12882	25911;25912	25912					-0.01303133936426093
SNWTSNFII	9	Unmodified	_SNWTSNFII_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4;ENST00000572485.5_1_17:7188262-7189945:+|nuORF	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2700805664062	2	541.269281	1080.52401	0.62779	0.0003398	0.51847	0.00028063	1.1463	0.00062043	541.2697041178857	84.628	0.39045	84.651	84.504	84.895	0.023132					53	25	3	0	0	0	0.10067	3	20727	20679;20686;20727		32.305	0	1	700110			19233	4851	12755	12882	25913;25914;25915	25915					-0.01303133936426093
SNWTSNFII	9	Unmodified	_SNWTSNFII_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4;ENST00000572485.5_1_17:7188262-7189945:+|nuORF	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	541.269281	1080.52401	0.83928	0.00045428	0.42498	0.00023003	1.2643	0.00068431	541.2695439747571	84.623	0.45833	84.623	84.471	84.929	0	-0.014058	-3.7423E-05	NaN	32.305	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	833290			19234	4851	12755	12882							-0.01303133936426093
SNYDLLRHL	9	Unmodified	_SNYDLLRHL_					0	0	0		nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000144893|Q86YW9-2|MED12L	nc|ENSG00000144893|Q86YW9-2|MED12L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.81884765625	2	565.80128	1129.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.756	1	27.756	27.256	28.256	0								0	0	0	0.28631	1	3639	3639		1.8442	0	1				19235	3231	12756	12883	25916	25916					0.02839646220513714
SPAEFFELM	9	Oxidation (M)	_SPAEFFELM(Oxidation (M))_		SPAEFFELM(1)		SPAEFFELM(64)	0	0	1		PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant;ENST00000585521.2_1_17:76374779-76411070:+|nuORF;PGS1|p.D279Afs*32|1|0.23|ENSG00000087157|chr17:78400811-78400811|A/-|frameshift_variant;nc|ENSG00000087157|Q32NB8-3|PGS1;nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1	PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant	PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2474365234375	2	543.74425	1085.47395	0.37524	0.00020403	-0.64227	-0.00034923	-0.26704	-0.0001452	543.743988556281	79.145	1.0848	79.145	78.681	79.765	0					60	37	2	0	0	0	0.011655	1	19146	19146		64.236	28.192	1	168400			19236	988	12757	12884	25917	25917		58			-0.06537004656593126
SPAEGSERL	9	Unmodified	_SPAEGSERL_					0	0	0		MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S	MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2352294921875	2	473.235439	944.456324	-0.43923	-0.00020786	-0.066633	-3.1533E-05	-0.50586	-0.00023939	473.2353178725579	25.722	0.50761	25.722	25.562	26.069	0					85	38	3	0	0	0	0.071704	3	3072	3033;3072;3117		38.615	3.6827	1	157880			19237	2470	12758	12885	25918;25919;25920	25919					-0.018125838672517602
SPAEGSERL	9	Unmodified	_SPAEGSERL_					0	0	0		MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S	MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2351379394531	2	473.235439	944.456324	-0.34793	-0.00016465	0.0049665	2.3503E-06	-0.34297	-0.0001623	473.2353173891888	25.609	0.47795	25.7	25.51	25.988	0.091507					90	38	3	0	0	0	0.062017	1	2898	2898		40.725	12.23	1	132080			19238	2470	12758	12885	25921	25921					-0.018125838672517602
SPAPAMSPVPP	11	Unmodified	_SPAPAMSPVPP_					0	0	0		nc|ENSG00000161681|Q9Y566-2|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1	nc|ENSG00000161681|Q9Y566-2|SHANK1	nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.3131713867188	2	525.76806	1049.52157	0.23997	0.00012617	-0.088772	-4.6673E-05	0.1512	7.9494E-05	525.7677575897209	71.705	0.52943	71.705	71.36	71.889	0					37	18	3	0	0	0	0.3095	1	16842	16842		5.2969	0	1	160280			19239	3798	12759	12886	25922	25922					-0.001213056657661582
SPAPEEKAVTL	11	Unmodified	_SPAPEEKAVTL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3090209960938	2	571.308603	1140.60265	-0.46489	-0.0002656	0.58533	0.00033441	0.12044	6.8809E-05	571.3090076362662	41.132	0.32792	41.132	40.996	41.324	0					27	11	3	0	0	0	0.38189	2	7618	7618;7667		8.4443	2.2525	1	122550			19240	5270	12760	12887	25923;25924	25923					0.037976735780148374
SPAPEEKAVTL	11	Unmodified	_SPAPEEKAVTL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.3088989257812	2	571.308603	1140.60265	-0.29435	-0.00016816	0.35219	0.00020121	0.057844	3.3047E-05	571.3088732595993	41.016	0.28414	41.106	40.981	41.265	0.089645					19	10	2	0	0	0	0.39177	1	7468	7468		6.1918	0	1	63320			19241	5270	12760	12887	25925	25925					0.037976735780148374
SPAPSAVLTL	10	Unmodified	_SPAPSAVLTL_					0	0	0		HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|9|2|sense	HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|9|2|sense	HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|9|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2762145996094	2	478.276575	954.538597	0.21667	0.00010363	-0.10705	-5.1197E-05	0.10962	5.2431E-05	478.2764511469281	68.983	0.88574	68.983	68.558	69.443	0					83	32	4	0	0	0	0.25276	1	16008	16008		27.629	0	1	1296200			19242	7349	12761	12888	25926	25926					0.0595093821170849
SPAPSAVLTL	10	Unmodified	_SPAPSAVLTL_					0	0	0		HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|9|2|sense	HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|9|2|sense	HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|9|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2767333984375	2	478.276575	954.538597	-0.019298	-9.2298E-06	0.11257	5.3839E-05	0.093271	4.4609E-05	478.2765658565647	68.86	0.91835	68.922	68.531	69.449	0.062126					95	34	4	0	0	0	0.25276	1	15837	15837		27.629	0	1	1361500			19243	7349	12761	12888	25927	25927					0.0595093821170849
SPASDTYIVF	10	Unmodified	_SPASDTYIVF_					0	0	0		nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|Q13765|NACA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2693481445312	2	550.268947	1098.52334	0.10844	5.9674E-05	0.46027	0.00025327	0.56872	0.00031295	550.26917515041	73.04	0.48935	73.04	72.824	73.313	0					40	16	3	0	0	0	0.16299	1	17333	17333		37.974	9.4872	1	1361500			19244	5231	12762	12889	25928	25928					-0.0219797337615546
SPASDTYIVF	10	Unmodified	_SPASDTYIVF_					0	0	0		nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|Q13765|NACA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.269287109375	2	550.268947	1098.52334	0.25823	0.00014209	0.10215	5.6208E-05	0.36037	0.0001983	550.2690195134645	73.011	0.48903	73.063	72.805	73.294	0.052574					50	16	4	0	0	0	0.16299	1	17160	17160		37.974	9.4872	1	1156700			19245	5231	12762	12889	25929	25929					-0.0219797337615546
SPAVDFRTM	9	Unmodified	_SPAVDFRTM_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.273193359375	2	512.250034	1022.48552	0.31801	0.0001629	0.064876	3.3233E-05	0.38289	0.00019613	512.2500832599176	38.701	0.60358	38.788	38.595	39.199	0.086884					47	22	4	0	0	0	0.25281	1	6767	6767		6.7232	0.96273	1	162380			19246	2923	12763	12890	25930	25930					-0.024827628425896364
SPCISGKF	8	Unmodified	_SPCISGKF_					0	0	0		ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.3155517578125	2	419.710014	837.405474	0.64703	0.00027157	0.41398	0.00017375	1.061	0.00044532	419.71002284542465	91.792	0.70998	91.792	91.584	92.294	0					38	26	2	0	0	0	0.3576	1	22998	22998		4.756	0	1	256000			19247	3870	12764	12891	25931	25931					-0.019732044457896336
SPCLFNTMNS	10	Unmodified	_SPCLFNTMNS_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7800903320312	2	557.238809	1112.46307	0.49168	0.00027399	-2.8765	-0.0016029	-2.3848	-0.0013289	557.2369982301026	51.827	0.48055	51.894	51.632	52.112	0.067173					24	16	2	0	0	0	0.30896	1	10742	10742		18.146	8.0724	1	70706	+		19248	8050	12765	12892	25932	25932					-0.08866730302520409
SPDAEEPQL	9	Unmodified	_SPDAEEPQL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.22698974609375	2	493.227279	984.440005	0.13466	6.6419E-05	-0.59045	-0.00029123	-0.45579	-0.00022481	493.22694905707226	46.262	0.41028	46.262	46.039	46.449	0					27	13	3	0	0	0	0.19398	1	9186	9186		19.257	0	1	107110			19249	7526	12766	12893	25933	25933					-0.052837098239933766
SPDAEEPQL	9	Unmodified	_SPDAEEPQL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2266845703125	2	493.227279	984.440005	0.12863	6.3446E-05	-0.34711	-0.0001712	-0.21848	-0.00010776	493.2269588405712	46.202	0.44644	46.288	45.98	46.426	0.085617					25	15	2	0	0	0	0.19398	1	9025	9025		19.257	0	1	87212			19250	7526	12766	12893	25934	25934					-0.052837098239933766
SPDAGHALLL	10	Unmodified	_SPDAGHALLL_					0	0	0			REV__ENSG00000148331|ENST00000277458|ASB6	REV__ENSG00000148331|ENST00000277458|ASB6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.745361328125	2	497.271824	992.529095	0.018729	9.3132E-06	-0.3514	-0.00017474	-0.33267	-0.00016543	497.2714502009776	32.186	0.32906	32.26	32.127	32.456	0.07378					24	15	2	0	0	0	0.31643	1	4805	4805		9.3831	1.7742	1	37104	+		19251	9588	12767	12894	25935	25935					0.032531699261767244
SPDAKIFCL	9	Unmodified	_SPDAKIFCL_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.25787353515625	2	497.257328	992.500103	0.57146	0.00028416	0.54861	0.0002728	1.1201	0.00055696	497.25754063169944	63.245	1.1681	63.245	62.969	64.137	0					64	43	2	0	0	0	0.0045417	4	14363	14311;14363;14422;14484		89.401	38.546	1	494260			19252	3599	12768	12895	25936;25937;25938;25939	25937					0.00355309305530227
SPDAKIFCL	9	Unmodified	_SPDAKIFCL_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2574768066406	2	497.257328	992.500103	0.48457	0.00024095	0.50078	0.00024902	0.98535	0.00048997	497.2575543573894	63.129	0.89724	63.201	62.934	63.831	0.072701					79	35	3	0	0	0	0.015341	4	14198	14149;14198;14259;14308		61.602	37.581	1	371670			19253	3599	12768	12895	25940;25941;25942;25943	25941					0.00355309305530227
SPDAPDFQL	9	Unmodified	_SPDAPDFQL_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000476641.2_1_20:40101874-40113142:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2326354980469	2	495.232364	988.450176	0.93028	0.0004607	-0.75641	-0.0003746	0.17386	8.6102E-05	495.23182379517436	66.589	0.47547	66.589	66.331	66.807	0					32	19	2	0	0	0	0.11547	1	15378	15378		29.082	7.3349	1	206340			19254	2241	12769	12896	25944	25944					-0.044511020987670236
SPDAPDFQL	9	Unmodified	_SPDAPDFQL_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000476641.2_1_20:40101874-40113142:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2323913574219	2	495.232364	988.450176	0.75456	0.00037368	-0.82714	-0.00040963	-0.072582	-3.5945E-05	495.2318962767595	66.568	0.41133	66.633	66.337	66.749	0.065063					29	16	2	0	0	0	0.091044	1	15194	15194		34.402	11.665	1	150600			19255	2241	12769	12896	25945	25945					-0.044511020987670236
SPDDLELEL	9	Unmodified	_SPDDLELEL_					0	0	0		UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant;ENSG00000151461|ENST00000357604|UPF2	UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7504272460938	2	515.750587	1029.48662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.229	1	75.229	74.729	75.729	0								0	0	0	0.19239	1	18003	18003		19.257	0	1				19256	3459	12770	12897	25946	25946					-0.026942699927303693
SPDDLELEL	9	Unmodified	_SPDDLELEL_					0	0	0		UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant;ENSG00000151461|ENST00000357604|UPF2	UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7507934570312	2	515.750587	1029.48662	0.41583	0.00021447	-0.58236	-0.00030035	-0.16653	-8.5886E-05	515.7503461499317	75.171	0.29764	75.215	75.115	75.412	0.044037					13	10	2	0	0	0	0.14091	3	17856	17838;17844;17856		25.399	0	1	118380			19257	3459	12770	12897	25947;25948;25949	25949					-0.026942699927303693
SPDENENEV	9	Unmodified	_SPDENENEV_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7093505859375	2	516.709451	1031.40435	-0.098028	-5.0652E-05	0.065209	3.3694E-05	-0.032819	-1.6958E-05	516.7094260443245	27.627	0.97115	27.627	27.407	28.378	0					185	67	4	0	0	0	0.002259	4	3609	3572;3609;3648;3685		114.19	74.237	1	920350			19258	1994	12771	12898	25950;25951;25952;25953	25951					-0.11009792071672564
SPDENENEV	9	Unmodified	_SPDENENEV_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7092895507812	2	516.709451	1031.40435	-0.094685	-4.8925E-05	0.060647	3.1337E-05	-0.034039	-1.7588E-05	516.709416577173	27.417	1.0856	27.503	27.277	28.362	0.0867					209	73	4	0	0	0	0.0042703	5	3415	3379;3415;3452;3492;3532		99.755	70.674	1	803400			19259	1994	12771	12898	25954;25955;25956;25957;25958	25955					-0.11009792071672564
SPDEVAKEL	9	Unmodified	_SPDEVAKEL_					0	0	0		nc|ENSG00000130147|Q9P0V3-2|SH3BP4;ENSG00000130147|ENST00000392011|SH3BP4	nc|ENSG00000130147|Q9P0V3-2|SH3BP4	nc|ENSG00000130147|Q9P0V3-2|SH3BP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2532043457031	2	494.253297	986.492041	0.041126	2.0326E-05	-0.047688	-2.357E-05	-0.0065621	-3.2434E-06	494.25309997034367	40.134	0.45779	40.223	40.018	40.475	0.088562					25	17	2	0	0	0	0.32831	1	7257	7257		2.9952	0	1	53446			19260	2451	12772	12899	25959	25959					-0.0017454641023277873
SPDEVAKEL	9	Unmodified	_SPDEVAKEL_					0	0	0		nc|ENSG00000130147|Q9P0V3-2|SH3BP4;ENSG00000130147|ENST00000392011|SH3BP4	nc|ENSG00000130147|Q9P0V3-2|SH3BP4	nc|ENSG00000130147|Q9P0V3-2|SH3BP4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	494.253297	986.492041	-0.061005	-3.0152E-05	-0.22531	-0.00011136	-0.28632	-0.00014151	494.25311083280894	40.263	0.49359	40.263	40.012	40.505	0	0.020014	-8.7638E-05	NaN	2.9952	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73016			19261	2451	12772	12899							-0.0017454641023277873
SPDFDNQTL	9	Unmodified	_SPDFDNQTL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7329711914062	2	518.732729	1035.4509	0.25718	0.00013341	-0.01597	-8.2842E-06	0.24121	0.00012512	518.7327340323035	53.148	0.73118	53.148	52.872	53.603	0					79	29	4	0	0	0	0.00066972	2	11266	11266;11308		128.93	75.1	1	762180			19262	5132	12773	12900	25960;25961	25960					-0.06540307449699867
SPDFDNQTL	9	Unmodified	_SPDFDNQTL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7329711914062	2	518.732729	1035.4509	0.37244	0.0001932	0.024491	1.2704E-05	0.39693	0.0002059	518.73271406132	53.126	0.69822	53.192	52.879	53.578	0.06543					84	33	3	0	0	0	0.0002808	1	11126	11126		114.2	54.128	1	582940			19263	5132	12773	12900	25962	25962					-0.06540307449699867
SPDGSDPKL	9	Unmodified	_SPDGSDPKL_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.224609375	2	458.224539	914.434526	-0.032996	-1.5119E-05	0.32683	0.00014976	0.29384	0.00013464	458.22460088236636	28.395	1.0253	28.395	28.095	29.12	0					119	52	3	0	0	0	0.029591	2	3818	3818;3863		51.415	21.575	1	731130			19264	1854	12774	12901	25963;25964	25963					-0.026113886158100286
SPDGSDPKL	9	Unmodified	_SPDGSDPKL_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.2244873046875	2	458.224539	914.434526	-0.226	-0.00010356	0.53123	0.00024342	0.30524	0.00013987	458.22469837525	28.256	0.72422	28.338	28.069	28.793	0.082134					106	41	3	0	0	0	0.026809	3	3641	3641;3679;3721		53.404	22.136	1	658450			19265	1854	12774	12901	25965;25966;25967	25965					-0.026113886158100286
SPDHPVVL	8	Unmodified	_SPDHPVVL_					0	0	0		nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP;BANP|p.L102Pfs*27|1|0.1|ENSG00000172530|chr16:87984223-87984224|-/ACCTTTATCAGAAGTCACTGATG|frameshift_variant	nc|ENSG00000172530|Q8N9N5-6|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.23455810546875	2	432.23471	862.454868	-0.010645	-4.6009E-06	-0.11677	-5.0473E-05	-0.12742	-5.5074E-05	432.234500632279	39.415	0.63344	39.504	39.297	39.93	0.088562					62	25	3	0	0	0	0.22517	1	7005	7005		40.449	14.107	1	495030			19266	4500	12775	12902	25968	25968					0.018138268346547193
SPDHSDHTL	9	Unmodified	_SPDHSDHTL_					0	0	0		TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7226867675781	2	504.722695	1007.43084	-0.42925	-0.00021665	0.21511	0.00010857	-0.21415	-0.00010808	504.72280581568884	18.945	1.0625	18.945	18.735	19.797	0					306	123	4	0	0	0	8.832E-06	2	1253	1223;1253		149.99	85.758	1	522620			19267	2776	12776	12903	25969;25970	25970					-0.07258058389652433
SPDHSDHTL	9	Unmodified	_SPDHSDHTL_					0	0	0		TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.72265625	2	504.722695	1007.43084	0.088033	4.4432E-05	-0.18263	-9.2176E-05	-0.094594	-4.7744E-05	504.722596314688	18.848	1.0908	18.938	18.749	19.84	0.089705					246	126	4	0	0	0	1.4799E-05	2	1146	1120;1146		144.35	89.577	1	553530			19268	2776	12776	12903	25971;25972	25972					-0.07258058389652433
SPDPTRESVL	10	Unmodified	_SPDPTRESVL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.28369140625	2	550.782753	1099.55095	-0.31662	-0.00017439	-0.14835	-8.1707E-05	-0.46497	-0.00025609	550.7826802966841	41.026	0.64433	41.026	40.736	41.38	0					56	22	4	0	0	0	0.41617	1	7584	7584		10.151	3.9448	1	172070			19269	3856	12777	12904	25973	25973					0.005159298840908377
SPDPTRESVL	10	Unmodified	_SPDPTRESVL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7833251953125	2	550.782753	1099.55095	-0.11605	-6.3918E-05	-0.0326	-1.7955E-05	-0.14865	-8.1874E-05	550.7827133800217	40.948	0.5309	41.038	40.801	41.332	0.089645					49	20	4	0	0	0	0.3142	1	7443	7443		17.443	5.9479	1	121760			19270	3856	12777	12904	25974	25974					0.005159298840908377
SPDRADPEA	9	Unmodified	_SPDRADPEA_					0	0	0		UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2	UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant	UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.21710205078125	2	479.217246	956.419939	-0.58333	-0.00027954	0.17508	8.3901E-05	-0.40825	-0.00019564	479.2173049377649	19.794	0.53025	19.794	19.611	20.141	0					132	58	3	0	0	0	0.22861	1	1451	1451		15.248	3.0078	1	80921			19271	2335	12778	12905	25975	25975					-0.060014607639573114
SPDSEVTSL	9	Unmodified	_SPDSEVTSL_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.7218017578125	2	467.72183	933.429106	0.25705	0.00012023	-0.051239	-2.3966E-05	0.20581	9.626E-05	467.72170811869006	47.934	0.63245	47.934	47.707	48.339	0					58	21	4	0	0	0	0.0046476	3	9700	9661;9700;9742		85.357	12.455	1	937020			19272	507	12779	12906	25976;25977;25978	25977					-0.04027112198264149
SPDSEVTSL	9	Unmodified	_SPDSEVTSL_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.7218322753906	2	467.72183	933.429106	0.31853	0.00014898	-0.11138	-5.2093E-05	0.20716	9.6891E-05	467.7216968172679	47.819	0.61568	47.899	47.685	48.301	0.080029					51	22	3	0	0	0	0.0076571	2	9552	9503;9552		74.423	6.3421	1	736050			19273	507	12779	12906	25979;25980	25980					-0.04027112198264149
SPDSGVYEM	9	Oxidation (M)	_SPDSGVYEM(Oxidation (M))_		SPDSGVYEM(1)		SPDSGVYEM(100)	0	0	1		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7001647949219	2	500.70004	999.385527	0.050408	2.5239E-05	0.2658	0.00013309	0.31621	0.00015833	500.7000919370836	34.508	1.3713	34.508	34.274	35.645	0					120	51	4	0	0	0	0.003963	3	5652	5604;5652;5694		103.75	57.727	1	815390			19274	4532	12780	12907	25981;25982;25983	25982		269			-0.11419044967067293
SPDSGVYEM	9	Oxidation (M)	_SPDSGVYEM(Oxidation (M))_		SPDSGVYEM(1)		SPDSGVYEM(100)	0	0	1		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.70013427734375	2	500.70004	999.385527	0.29789	0.00014915	-0.065075	-3.2583E-05	0.23281	0.00011657	500.6999503673005	37.538	2.2172	37.538	36.917	39.134	0					195	81	4	0	0	0	0.0042692	6	6580	6490;6535;6580;6623;6677;6728		99.799	61.825	1	320550			19275	4532	12780	12907	25984;25985;25986;25987;25988;25989	25986		269			-0.11419044967067293
SPDSGVYEM	9	Oxidation (M)	_SPDSGVYEM(Oxidation (M))_		SPDSGVYEM(1)		SPDSGVYEM(100)	0	0	1		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.699951171875	2	500.70004	999.385527	0.088715	4.4419E-05	0.23923	0.00011978	0.32794	0.0001642	500.700074184477	34.428	1.7201	34.504	33.846	35.567	0.076244					122	56	4	0	0	0	0.003963	3	5469	5469;5510;5549		103.75	65.774	1	644360			19276	4532	12780	12907	25990;25991;25992	25990		269			-0.11419044967067293
SPDSGVYEM	9	Oxidation (M)	_SPDSGVYEM(Oxidation (M))_		SPDSGVYEM(1)		SPDSGVYEM(85)	0	0	1		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7003479003906	2	500.70004	999.385527	0.31428	0.00015736	0.08816	4.4142E-05	0.40244	0.0002015	500.6999844895368	37.384	1.9737	37.468	36.741	38.715	0.084476					155	72	3	0	0	0	0.0046499	6	6400	6305;6349;6400;6451;6497;6542		85.272	47.298	1	231680			19277	4532	12780	12907	25993;25994;25995;25996;25997;25998	25995		269			-0.11419044967067293
SPDSGVYEM	9	Unmodified	_SPDSGVYEM_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7027282714844	2	492.702583	983.390612	0.2869	0.00014136	1.5089	0.00074342	1.7958	0.00088477	492.70330064139176	48.315	1.0405	48.315	48.018	49.059	0					52	35	2	0	0	0	0.12809	1	9811	9811		26.884	6.0124	1	113440			19278	4532	12780	12908	25999	25999					-0.10174741104447094
SPDSGVYEM	9	Unmodified	_SPDSGVYEM_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7034606933594	2	492.702583	983.390612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.283	1	48.363	47.863	48.863	0.080029								0	0	0	0.14119	1	9662	9662		26.884	6.0124	1				19279	4532	12780	12908	26000	26000					-0.10174741104447094
SPDVNYEEL	9	Unmodified	_SPDVNYEEL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2390747070312	2	533.240386	1064.46622	0.24887	0.00013271	-0.62427	-0.00033289	-0.3754	-0.00020018	533.239817004742	56.598	0.58463	56.598	56.3	56.885	0					35	21	2	0	0	0	0.064247	2	12294	12277;12294		40.239	4.1122	1	174300			19280	4116	12781	12909	26001;26002	26002					-0.06343440652517529
SPEDGIHEL	9	Unmodified	_SPEDGIHEL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;ENST00000492816.6_1_2:216245477-216245942:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.73486328125	2	498.735271	995.45599	-0.52078	-0.00025973	-0.64487	-0.00032162	-1.1657	-0.00058135	498.7348880036463	41.693	0.57098	41.693	41.459	42.03	0					46	20	3	0	0	0	0.0042692	1	7782	7782		99.799	51.453	1	278350			19281	1902	12782	12910	26003	26003					-0.04192003587104409
SPEDGIHEL	9	Unmodified	_SPEDGIHEL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;ENST00000492816.6_1_2:216245477-216245942:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	498.735271	995.45599	-0.35193	-0.00017552	-0.80036	-0.00039917	-1.1523	-0.00057468	498.7348615174349	41.592	0.64454	41.682	41.428	42.072	0.089764	-0.005737	-0.00010024	NaN	99.799	48	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208180			19282	1902	12782	12910							-0.04192003587104409
SPEDYYTSL	9	Unmodified	_SPEDYYTSL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.276123046875	2	537.734937	1073.45532	0.51237	0.00027552	-0.24594	-0.00013225	0.26643	0.00014327	537.7348732608551	60.509	0.74898	60.509	60.31	61.059	0					58	26	3	0	0	0	0.19376	1	13543	13543		25.399	12.868	1	348030			19283	1937	12783	12911	26004	26004					-0.07846843026800343
SPEDYYTSL	9	Unmodified	_SPEDYYTSL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.276123046875	2	537.734937	1073.45532	0.41685	0.00022416	-0.40658	-0.00021863	0.010268	5.5212E-06	537.7348761588462	60.463	0.57356	60.536	60.306	60.879	0.073421					46	19	3	0	0	0	0.13166	1	13363	13363		37.974	6.7057	1	293040			19284	1937	12783	12911	26005	26005					-0.07846843026800343
SPEEGAVRL	9	Unmodified	_SPEEGAVRL_					0	0	0		ENSG00000126464|ENST00000418929|PRR12	ENSG00000126464|ENST00000418929|PRR12	ENSG00000126464|ENST00000418929|PRR12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.25335693359375	2	479.253631	956.49271	0.039265	1.8818E-05	-0.3633	-0.00017411	-0.32404	-0.0001553	479.2532933060317	37.695	0.6356	37.695	37.52	38.156	0					38	21	2	0	0	0	0.1646	1	6650	6650		22.658	6.509	1	92481			19285	2340	12784	12912	26006	26006					0.012722930294785328
SPEEGAVRL	9	Unmodified	_SPEEGAVRL_					0	0	0		ENSG00000126464|ENST00000418929|PRR12	ENSG00000126464|ENST00000418929|PRR12	ENSG00000126464|ENST00000418929|PRR12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.25347900390625	2	479.253631	956.49271	0.038851	1.862E-05	-0.26957	-0.00012919	-0.23072	-0.00011057	479.2533804037617	37.616	0.74494	37.701	37.42	38.165	0.084476					41	25	2	0	0	0	0.029591	1	6461	6461		51.415	9.4597	1	103090			19286	2340	12784	12912	26007	26007					0.012722930294785328
SPEEIDAQL	9	Unmodified	_SPEEIDAQL_					0	0	0		ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.24334716796875	2	501.242929	1000.47131	0.61056	0.00030604	0.3446	0.00017273	0.95516	0.00047877	501.24306800336524	54.496	1.1411	54.496	54.239	55.38	0					108	47	4	0	0	0	1.1935E-05	4	11680	11643;11680;11717;11765		147.06	81.824	1	3941400			19287	1509	12785	12913	26008;26009;26010;26011	26009					-0.02891136789912707
SPEEIDAQL	9	Unmodified	_SPEEIDAQL_					0	0	0		ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2433166503906	2	501.242929	1000.47131	0.58484	0.00029315	0.35136	0.00017612	0.9362	0.00046926	501.2430475770775	54.462	0.81379	54.527	54.254	55.068	0.065128					108	39	4	0	0	0	1.7199E-05	4	11539	11495;11539;11577;11621		142.08	72.975	1	3228900			19288	1509	12785	12913	26012;26013;26014;26015	26013					-0.02891136789912707
SPEEKQEML	9	Unmodified	_SPEEKQEML_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7578735351562	2	545.757889	1089.50123	-0.094124	-5.1369E-05	0.17468	9.5332E-05	0.080555	4.3963E-05	545.7579135751432	32.098	0.76123	32.098	31.897	32.658	0					102	33	4	0	0	0	0.0093024	2	4942	4897;4942		69.338	11.616	1	382330			19289	557	12786	12914	26016;26017	26017					-0.03994521116192118
SPEEKQEML	9	Unmodified	_SPEEKQEML_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7579345703125	2	545.757889	1089.50123	-0.052512	-2.8659E-05	0.15661	8.5471E-05	0.1041	5.6812E-05	545.7578919602937	32.042	0.85511	32.116	31.879	32.734	0.07378					127	42	4	0	0	0	0.016057	3	4762	4762;4803;4849		61.09	11.536	1	338150			19290	557	12786	12914	26018;26019;26020	26018					-0.03994521116192118
SPEEKQEML	9	Oxidation (M)	_SPEEKQEM(Oxidation (M))L_		SPEEKQEM(1)L		SPEEKQEM(140)L	0	0	1		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.755615234375	2	553.755346	1105.49614	-0.06184	-3.4244E-05	0.0056055	3.1041E-06	-0.056235	-3.114E-05	553.7554978727189	25.555	0.8784	25.555	25.176	26.054	0					261	68	5	0	0	0	6.7553E-08	1	3025	3025		139.78	54.14	1	690070			19291	557	12786	12915	26021	26021		27			-0.05238824978823686
SPEEKQEML	9	Oxidation (M)	_SPEEKQEM(Oxidation (M))L_		SPEEKQEM(1)L		SPEEKQEM(130)L	0	0	1		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7554931640625	2	553.755346	1105.49614	-0.040952	-2.2677E-05	0.091921	5.0902E-05	0.05097	2.8225E-05	553.7554705142965	26.413	1.485	26.413	25.994	27.479	0					370	107	5	0	0	0	7.4057E-05	1	3299	3299		125.04	39.396	1	592300			19292	557	12786	12915	26022	26022		27			-0.05238824978823686
SPEEKQEML	9	Oxidation (M)	_SPEEKQEM(Oxidation (M))L_		SPEEKQEM(1)L		SPEEKQEM(140)L	0	0	1		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7556762695312	2	553.755346	1105.49614	0.15284	8.4637E-05	0.022212	1.23E-05	0.17505	9.6937E-05	553.7554330178388	25.446	0.81974	25.542	25.125	25.945	0.096073					161	68	4	0	0	0	0.00021732	4	2846	2772;2809;2846;2884		136.39	51.381	1	577920			19293	557	12786	12915	26023;26024;26025;26026	26025		27			-0.05238824978823686
SPEEKQEML	9	Oxidation (M)	_SPEEKQEM(Oxidation (M))L_		SPEEKQEM(1)L		SPEEKQEM(130)L	0	0	1		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.75537109375	2	553.755346	1105.49614	0.1242	6.8778E-05	0.012889	7.1371E-06	0.13709	7.5915E-05	553.7554047048436	26.297	1.5486	26.388	25.905	27.453	0.091507					364	120	4	0	0	0	0.00090591	5	3093	3023;3057;3093;3131;3169		125.04	49.841	1	472060			19294	557	12786	12915	26027;26028;26029;26030;26031	26029		27			-0.05238824978823686
SPEEKRKN	8	Unmodified	_SPEEKRKN_					0	0	0			REV__ENST00000373874.6_1_20:35220081-35220303:+|nuORF	REV__ENST00000373874.6_1_20:35220081-35220303:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.76568603515625	2	494.26453	986.514508	0.044972	2.2228E-05	-0.43158	-0.00021331	-0.38661	-0.00019109	494.26426256054765	25.189	0.25059	25.285	25.113	25.363	0.096075					30	21	2	0	0	0	0.54097	1	2790	2790		0.69038	0	1	10749	+		19295	11622	12787	12916	26032	26032					0.0207109777804817
SPEEMEEIQ	9	Unmodified	_SPEEMEEIQ_					0	0	0		ENSG00000183318|ENST00000689094|SPDYE4	ENSG00000183318|ENST00000689094|SPDYE4	ENSG00000183318|ENST00000689094|SPDYE4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2224731445312	2	546.231704	1090.44886	0.2013	0.00010996	-0.0084567	-4.6193E-06	0.19285	0.00010534	546.2317493647392	50.639	1.7189	50.639	50.024	51.743	0					125	59	3	0	0	0	0.29576	1	10607	10607		7.2892	0	1	222450			19296	4918	12788	12917	26033	26033					-0.09275104249809374
SPEEMEEIQ	9	Unmodified	_SPEEMEEIQ_					0	0	0		ENSG00000183318|ENST00000689094|SPDYE4	ENSG00000183318|ENST00000689094|SPDYE4	ENSG00000183318|ENST00000689094|SPDYE4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2223510742188	2	546.231704	1090.44886	0.30234	0.00016515	-0.24832	-0.00013564	0.054019	2.9507E-05	546.2316771845994	50.561	1.4354	50.634	50.181	51.617	0.07312					96	53	3	0	0	0	0.29576	1	10444	10444		7.2892	0	1	184490			19297	4918	12788	12917	26034	26034					-0.09275104249809374
SPEESPFGDLL	11	Unmodified	_SPEESPFGDLL_					0	0	0		ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.1543579101562	2	595.782418	1189.55028	0.35229	0.00020989	-0.16365	-9.7501E-05	0.18864	0.00011239	595.7824709430193	82.768	0.36517	82.768	82.625	82.99	0					21	12	3	0	0	0	0.31032	1	20317	20317		7.609	2.8529	1	75906			19298	1240	12789	12918	26035	26035					-0.036909095555984095
SPEESPFGDLL	11	Unmodified	_SPEESPFGDLL_					0	0	0		ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.7828979492188	2	595.782418	1189.55028	0.14239	8.4835E-05	0.054434	3.2431E-05	0.19683	0.00011727	595.7824894422984	82.8	0.30926	82.822	82.648	82.958	0.021744					19	10	2	0	0	0	0.32422	1	20165	20165		15.248	7.6395	1	121220			19299	1240	12789	12918	26036	26036					-0.036909095555984095
SPEESSKAL	9	Unmodified	_SPEESSKAL_					0	0	0		nc|ENSG00000154059|Q9P2X3-2|IMPACT;ENSG00000154059|ENST00000284202|IMPACT	nc|ENSG00000154059|Q9P2X3-2|IMPACT	nc|ENSG00000154059|Q9P2X3-2|IMPACT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2374572753906	2	474.237647	946.460741	-0.49359	-0.00023408	-0.10455	-4.9582E-05	-0.59814	-0.00028366	474.2376609386168	23.754	0.46136	23.754	23.583	24.045	0					91	39	3	0	0	0	0.22861	1	2491	2491		15.248	7.3383	1	53492			19300	3544	12790	12919	26037	26037					-0.014631194443268214
SPEESSKAL	9	Unmodified	_SPEESSKAL_					0	0	0		nc|ENSG00000154059|Q9P2X3-2|IMPACT;ENSG00000154059|ENST00000284202|IMPACT	nc|ENSG00000154059|Q9P2X3-2|IMPACT	nc|ENSG00000154059|Q9P2X3-2|IMPACT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2375183105469	2	474.237647	946.460741	-0.28128	-0.00013339	-0.098103	-4.6524E-05	-0.37938	-0.00017992	474.2376386767153	23.55	0.34559	23.65	23.511	23.856	0.099739					69	31	3	0	0	0	0.26705	1	2309	2309		10.8	4.0763	1	50969			19301	3544	12790	12919	26038	26038					-0.014631194443268214
SPEGKEESL	9	Unmodified	_SPEGKEESL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2347717285156	2	488.235104	974.455655	-0.15905	-7.7652E-05	-0.42825	-0.00020909	-0.5873	-0.00028674	488.23476869384444	24.281	0.41954	24.38	24.244	24.664	0.099739					69	39	2	0	0	0	0.18398	1	2544	2544		20.415	0	1	54870			19302	7539	12791	12920	26039	26039					-0.03259423306951703
SPENEEHIL	9	Unmodified	_SPENEEHIL_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.25390625	2	534.253828	1066.4931	0.5599	0.00029913	-0.62043	-0.00033147	-0.060538	-3.2343E-05	534.2536118998822	38.195	0.70074	38.282	38.017	38.717	0.08688					59	25	3	0	0	0	0.0042616	1	6634	6634		100.09	77.354	1	224050			19303	3069	12792	12921	26040	26040					-0.0374833204132301
SPENEEHIL	9	Unmodified	_SPENEEHIL_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	534.253828	1066.4931	0.38958	0.00020813	-0.46587	-0.0002489	-0.076299	-4.0763E-05	534.2537649096545	38.292	0.7261	38.292	38.076	38.802	0	0.0048711	7.6433E-05	NaN	100.09	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277200			19304	3069	12792	12921							-0.0374833204132301
SPEPGAVVL	9	Unmodified	_SPEPGAVVL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.2486267089844	2	434.742368	867.470183	0.44262	0.00019243	-1.0654	-0.00046318	-0.62279	-0.00027075	434.74208912519475	57.049	0.43906	57.049	56.857	57.296	0					22	15	2	0	0	0	0.2446	1	12419	12419		11.64	0.81637	1	159490			19305	7538	12793	12922	26041	26041					0.031146936318691587
SPEPGTSEL	9	Unmodified	_SPEPGTSEL_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.7161560058594	2	458.716547	915.418542	-0.33746	-0.0001548	-0.22606	-0.0001037	-0.56352	-0.0002585	458.71630642058165	41.192	0.43674	41.192	40.996	41.433	0					36	15	3	0	0	0	0.083124	1	7652	7652		36.127	10.728	1	157280			19306	2357	12794	12923	26042	26042					-0.04255094852703678
SPEPGTSEL	9	Unmodified	_SPEPGTSEL_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.7162780761719	2	458.716547	915.418542	-0.40232	-0.00018455	-0.17481	-8.0187E-05	-0.57713	-0.00026474	458.71634475714296	41.1	0.52259	41.19	40.953	41.475	0.089645					39	18	3	0	0	0	0.10833	1	7509	7509		30.637	10.183	1	157090			19307	2357	12794	12923	26043	26043					-0.04255094852703678
SPEPKDQTL	9	Unmodified	_SPEPKDQTL_					0	0	0		ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion	ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|1|fusion	ENSG00000173692|ENST00000308696|PSMD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.75823974609375	2	507.758746	1013.50294	-0.2104	-0.00010683	-0.89276	-0.0004533	-1.1032	-0.00056014	507.75812773868995	27.448	0.6588	27.448	27.235	27.894	0					85	50	3	0	0	0	0.026809	2	3542	3542;3564		53.404	13.454	1	298480			19308	4554;7677	12795	12924	26044;26045	26044					-0.003271440359412736
SPEPKDQTL	9	Unmodified	_SPEPKDQTL_					0	0	0		ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion	ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|1|fusion	ENSG00000173692|ENST00000308696|PSMD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7583312988281	2	507.758746	1013.50294	-0.15284	-7.7608E-05	-0.77895	-0.00039552	-0.9318	-0.00047313	507.75821842584895	27.346	0.5941	27.432	27.237	27.831	0.0867					81	46	3	0	0	0	0.015341	1	3377	3377		61.602	13.853	1	266200			19309	4554;7677	12795	12924	26046	26046					-0.003271440359412736
SPEPLEAIL	9	Unmodified	_SPEPLEAIL_					0	0	0		nc|ENSG00000119866|Q9H165-8|BCL11A;nc|ENSG00000119866|Q9H165-3|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.768310546875	2	484.768583	967.522613	0.024137	1.1701E-05	0.64735	0.00031382	0.67149	0.00032552	484.76866873831	77.804	0.3584	77.804	77.655	78.013	0					21	11	3	0	0	0	0.18364	1	18786	18786		20.454	5.6154	1	88733			19310	2092	12796	12925	26047	26047					0.03755231974821527
SPEPLEAIL	9	Unmodified	_SPEPLEAIL_					0	0	0		nc|ENSG00000119866|Q9H165-8|BCL11A;nc|ENSG00000119866|Q9H165-3|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.76849365234375	2	484.768583	967.522613	0.18333	8.8872E-05	0.073067	3.5421E-05	0.2564	0.00012429	484.7684843143623	77.758	0.35076	77.792	77.649	77.999	0.034485					19	11	2	0	0	0	0.26684	1	18632	18632		10.824	0.75	1	77231			19311	2092	12796	12925	26048	26048					0.03755231974821527
SPEQFDLI	8	Unmodified	_SPEQFDLI_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7361755371094	2	474.737283	947.460012	0.27426	0.0001302	-2.3222	-0.0011025	-2.048	-0.00097225	474.73597970067647	55.217	0.32098	55.217	55.059	55.38	0					19	11	2	0	0	0	0.52476	1	11905	11905		9.3831	0	1	53063			19312	4990	12797	12926	26049	26049					-0.015819140933786002
SPERMMALG	9	2 Oxidation (M)	_SPERM(Oxidation (M))M(Oxidation (M))ALG_		SPERM(1)M(1)ALG		SPERM(42)M(42)ALG	0	0	2		ENST00000564218.5_1_16:31448362-31454203:-|nuORF	ENST00000564218.5_1_16:31448362-31454203:-|nuORF	ENST00000564218.5_1_16:31448362-31454203:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2344970703125	2	512.233527	1022.4525	0.62887	0.00032213	1.3757	0.00070468	2.0046	0.0010268	512.2342347105525	54.469	0.43908	54.469	54.267	54.706	0					41	21	2	0	0	0	0.0569	1	11702	11702		41.84	41.84	1	583240			19313	7173	12798	12927	26050	26050		327;328			-0.057827129569432145
SPERMMALG	9	2 Oxidation (M)	_SPERM(Oxidation (M))M(Oxidation (M))ALG_		SPERM(1)M(1)ALG		SPERM(42)M(42)ALG	0	0	2		ENST00000564218.5_1_16:31448362-31454203:-|nuORF	ENST00000564218.5_1_16:31448362-31454203:-|nuORF	ENST00000564218.5_1_16:31448362-31454203:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.234375	2	512.233527	1022.4525	0.59216	0.00030332	1.2731	0.00065211	1.8652	0.00095543	512.2341721432047	54.446	0.39278	54.512	54.345	54.738	0.065128					47	21	3	0	0	0	0.0569	1	11555	11555		41.84	18.691	1	502430			19314	7173	12798	12927	26051	26051		327;328			-0.057827129569432145
SPERRLLS	8	Unmodified	_SPERRLLS_					0	0	0			REV__nc|ENSG00000173334|Q96RU8-2|TRIB1	REV__nc|ENSG00000173334|Q96RU8-2|TRIB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.277587890625	2	479.277441	956.540328	0.54704	0.00026218	0.2875	0.00013779	0.83454	0.00039998	479.2774383289488	81.265	0.64157	81.265	80.959	81.601	0					48	21	3	0	0	0	0.53423	1	19918	19918		5.2307	0	1	157790	+		19315	10316	12799	12928	26052	26052					0.06031992020336929
SPETRENAL	9	Unmodified	_SPETRENAL_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.75384521484375	2	508.753995	1015.49344	-0.23039	-0.00011721	-0.04923	-2.5046E-05	-0.27961	-0.00014226	508.7539462336358	25.802	0.65892	25.802	25.619	26.278	0					124	52	4	0	0	0	0.034744	2	3094	3057;3094		47.732	32.483	1	237530			19316	3218	12800	12929	26053;26054	26054					-0.0136891232148173
SPETRENAL	9	Unmodified	_SPETRENAL_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.75396728515625	2	508.753995	1015.49344	-0.090102	-4.584E-05	-0.098792	-5.0261E-05	-0.18889	-9.6101E-05	508.75391607174663	25.662	0.48236	25.753	25.57	26.052	0.091507					111	38	4	0	0	0	0.0042616	2	2925	2888;2925		100.09	60.141	1	228840			19317	3218	12800	12929	26055;26056	26056					-0.0136891232148173
SPEYFEPIL	9	Unmodified	_SPEYFEPIL_					0	0	0		ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENST00000434597.2_1_9:37477166-37477928:+|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENST00000526766.1_1_11:112051504-112052349:+|nuORF	ENST00000526766.1_1_11:112051504-112052349:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7740478515625	2	547.773865	1093.53318	0.70992	0.00038887	-0.26504	-0.00014518	0.44488	0.00024369	547.7736205814543	79.792	0.84152	79.792	79.562	80.403	0					79	28	6	0	0	0	0.0097093	3	19403	19359;19403;19448		68.081	25.986	1	2074900			19318	1426	12801	12930	26057;26058;26059	26058					-0.00984785370769714
SPEYFEPIL	9	Unmodified	_SPEYFEPIL_					0	0	0		ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENST00000434597.2_1_9:37477166-37477928:+|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENST00000526766.1_1_11:112051504-112052349:+|nuORF	ENST00000526766.1_1_11:112051504-112052349:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7741088867188	2	547.773865	1093.53318	0.45667	0.00025015	0.052589	2.8807E-05	0.50926	0.00027896	547.7737851718756	79.806	0.75432	79.832	79.547	80.302	0.026436					72	26	4	0	0	0	0.0064512	3	19245	19206;19245;19291		78.149	27.294	1	2017900			19319	1426	12801	12930	26060;26061;26062	26061					-0.00984785370769714
SPFEFGFTF	9	Unmodified	_SPFEFGFTF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7481689453125	2	539.74765	1077.48075	0.28356	0.00015305	0.41833	0.0002258	0.70189	0.00037885	539.7478341063523	95.576	0.85875	95.576	95.328	96.187	0					100	41	4	0	0	0	1.0762E-12	3	24226	24182;24226;24272		180.01	116.45	1	2626600			19320	1500	12802	12931	26063;26064;26065	26064					-0.05489323713709382
SPFEFGFTF	9	Unmodified	_SPFEFGFTF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7479248046875	2	539.74765	1077.48075	0.3904	0.00021072	0.21969	0.00011858	0.6101	0.0003293	539.7476986335563	95.539	0.50529	95.578	95.332	95.838	0.038872					62	22	3	0	0	0	4.9395E-24	2	24038	24038;24092		223.6	160.04	1	2130400			19321	1500	12802	12931	26066;26067	26066					-0.05489323713709382
SPFEFGFTF	9	Unmodified	_SPFEFGFTF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8184204101562	2	539.74765	1077.48075	0.46066	0.00024864	0.58606	0.00031633	1.0467	0.00056497	539.7480173538195	95.849	0.39754	95.887	95.838	96.235	0.038872					30	20	2	0	0	0	0.13166	1	24127	24127		37.974	19.839	1	119960			19322	1500	12802	12931	26068	26068					-0.05489323713709382
SPFKADIEM	9	Oxidation (M)	_SPFKADIEM(Oxidation (M))_		SPFKADIEM(1)		SPFKADIEM(78)	0	0	1		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.24951171875	2	527.2497	1052.48485	-0.47961	-0.00025287	-0.57342	-0.00030234	-1.053	-0.00055521	527.2495878954473	41.249	0.77228	41.249	40.822	41.594	0					59	27	4	0	0	0	0.00648	1	7658	7658		78.06	51.177	1	252510			19323	2766	12803	12932	26069	26069		179			-0.03929602282300948
SPFKADIEM	9	Oxidation (M)	_SPFKADIEM(Oxidation (M))_		SPFKADIEM(1)		SPFKADIEM(61)	0	0	1		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.249755859375	2	527.2497	1052.48485	-0.36239	-0.00019107	-0.39009	-0.00020567	-0.75247	-0.00039674	527.2494334255231	41.166	0.69274	41.256	40.928	41.621	0.089645					51	26	3	0	0	0	0.016057	2	7499	7499;7546		61.09	40.675	1	234100			19324	2766	12803	12932	26070;26071	26070		179			-0.03929602282300948
SPFRFEISF	9	Unmodified	_SPFRFEISF_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2875366210938	2	565.287474	1128.5604	0.33741	0.00019073	0.51865	0.00029318	0.85606	0.00048392	565.2877739282385	75.641	0.55125	75.641	75.425	75.977	0					60	31	3	0	0	0	0.0046695	2	18166	18119;18166		84.522	38.501	1	2863400			19325	1446	12804	12933	26072;26073	26073					0.001257429602674165
SPFRFEISF	9	Unmodified	_SPFRFEISF_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2876586914062	2	565.287474	1128.5604	0.3403	0.00019237	0.53587	0.00030292	0.87617	0.00049529	565.287780130198	75.59	0.49834	75.634	75.44	75.939	0.044037					71	27	4	0	0	0	0.0016629	2	17968	17968;18011		117.84	63.064	1	4909600			19326	1446	12804	12933	26074;26075	26074					0.001257429602674165
SPGECVYRF	9	Unmodified	_SPGECVYRF_					0	0	0			REV__nc|ENSG00000109320|P19838|NFKB1	REV__nc|ENSG00000109320|P19838|NFKB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2421875	2	529.242209	1056.46987	0.4043	0.00021397	0.3438	0.00018195	0.7481	0.00039593	529.2422879730506	96.574	0.44397	96.574	96.38	96.824	0					39	19	3	0	0	0	0.30005	1	24493	24493		6.7232	0.96273	1	244930	+		19327	8638	12805	12934	26076	26076					-0.056110493596634115
SPGECVYRF	9	Unmodified	_SPGECVYRF_					0	0	0			REV__nc|ENSG00000109320|P19838|NFKB1	REV__nc|ENSG00000109320|P19838|NFKB1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	529.242209	1056.46987	0.4043	0.00021397	0.3438	0.00018195	0.7481	0.00039593	529.2422879730506	96.574	0.44397	96.574	96.38	96.824	0	-0.0027548	-1.3869E-06	NaN	6.7232	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244930	+		19328	8638	12805	12934							-0.056110493596634115
SPGGVYATR	9	Unmodified	_SPGGVYATR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.2349853515625	2	454.235242	906.45593	-0.088329	-4.0122E-05	-0.25877	-0.00011754	-0.3471	-0.00015766	454.2350028172045	25.023	0.64706	25.023	24.867	25.514	0					108	51	3	0	0	0	0.026931	2	2873	2833;2873		53.317	28.326	1	113330			19329	494	12806	12935	26077;26078	26078					-0.0010395879643283479
SPGGVYATR	9	Unmodified	_SPGGVYATR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.2350769042969	2	454.235242	906.45593	-0.13498	-6.1312E-05	0.0013321	6.051E-07	-0.13365	-6.0707E-05	454.2351577799125	24.871	0.50729	24.967	24.815	25.322	0.096073					99	46	3	0	0	0	0.13554	2	2667	2667;2705		26.021	10.772	1	103700			19330	494	12806	12935	26079;26080	26079					-0.0010395879643283479
SPHCPPSTIPF	11	Unmodified	_SPHCPPSTIPF_					0	0	0			REV__nc|ENSG00000126562|Q96J92-3|WNK4	REV__nc|ENSG00000126562|Q96J92-3|WNK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3475341796875	2	591.784241	1181.55393	0.353	0.0002089	-2.315	-0.00137	-1.962	-0.0011611	591.7827117164286	83.085	0.6166	83.107	82.823	83.44	0.021751					38	21	3	0	0	0	0.3095	1	20227	20227		13.042	2.9685	1	250650	+		19331	8990	12807	12936	26081	26081					-0.029585182627670292
SPHDISNVL	9	Unmodified	_SPHDISNVL_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.25311279296875	2	491.253631	980.49271	-0.12459	-6.1207E-05	-0.11697	-5.7464E-05	-0.24157	-0.00011867	491.25350184112745	45.739	0.47784	45.739	45.503	45.981	0					32	16	3	0	0	0	0.28472	1	9011	9011		8.7454	2.0222	1	108130			19332	4808	12808	12937	26082	26082					0.0016829302946916869
SPHDISNVL	9	Unmodified	_SPHDISNVL_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	491.253631	980.49271	0.040371	1.9833E-05	0.39614	0.0001946	0.43651	0.00021444	491.2536648499683	45.644	0.42884	45.729	45.525	45.954	0.085617	-0.0047541	0.00035167	NaN	8.7454	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90728			19333	4808	12808	12937							0.0016829302946916869
SPHEESISL	9	Unmodified	_SPHEESISL_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.74310302734375	2	499.743096	997.47164	-0.11538	-5.7659E-05	0.34962	0.00017472	0.23424	0.00011706	499.7431511368595	40.095	0.79527	40.095	39.894	40.69	0					82	27	4	0	0	0	0.074645	2	7344	7297;7344		37.974	9.4795	1	458210			19334	613	12809	12938	26083;26084	26084					-0.027197170700446804
SPHEESISL	9	Unmodified	_SPHEESISL_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7431335449219	2	499.743096	997.47164	0.012162	6.0781E-06	0.35262	0.00017622	0.36478	0.0001823	499.74313090454206	40.018	0.58676	40.107	39.905	40.492	0.088562					69	22	4	0	0	0	0.074645	2	7195	7146;7195		37.974	9.4795	1	383710			19335	613	12809	12938	26085;26086	26086					-0.027197170700446804
SPHLEEISL	9	Unmodified	_SPHLEEISL_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7693481445312	2	512.769114	1023.52368	0.53441	0.00027403	-0.71123	-0.0003647	-0.17682	-9.0667E-05	512.7691185691743	55.32	1.1025	55.32	55.059	56.162	0					73	39	3	0	0	0	0.074645	2	11924	11924;11971		37.974	0	1	488550			19336	3033	12810	12939	26087;26088	26087					0.01285446343717922
SPHLEEISL	9	Unmodified	_SPHLEEISL_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.769287109375	2	512.769114	1023.52368	0.48105	0.00024667	-1.693	-0.00086811	-1.2119	-0.00062144	512.7690153488164	55.29	0.97689	55.356	55.089	56.066	0.065128					114	35	5	0	0	0	0.028398	1	11776	11776		52.268	0	1	459820			19337	3033	12810	12939	26089	26089					0.01285446343717922
SPHPLSPSL	9	Unmodified	_SPHPLSPSL_					0	0	0			REV__ENST00000335793.3_1_17:71280888-71281083:-|nuORF	REV__ENST00000335793.3_1_17:71280888-71281083:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.6736755371094	2	467.753267	933.491981	-0.16326	-7.6365E-05	-0.38954	-0.00018221	-0.5528	-0.00025857	467.75293562016884	45.729	0.32961	45.814	45.606	45.936	0.085621					21	12	2	0	0	0	0.25281	1	8852	8852		6.7232	0	1	35239	+		19338	11440	12811	12940	26090	26090					0.022574983804247495
SPHPLSPSL	9	Unmodified	_SPHPLSPSL_					0	0	0			REV__ENST00000335793.3_1_17:71280888-71281083:-|nuORF	REV__ENST00000335793.3_1_17:71280888-71281083:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	467.753267	933.491981	-0.17208	-8.0489E-05	0.24116	0.0001128	0.069079	3.2312E-05	467.7532922260537	45.841	0.33772	45.841	45.617	45.955	0	0.013401	0.00012928	NaN	6.7232	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34750	+		19339	11440	12811	12940							0.022574983804247495
SPHYQEWIL	9	Unmodified	_SPHYQEWIL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7905883789062	2	586.790381	1171.56621	0.62904	0.00036912	-0.087843	-5.1545E-05	0.5412	0.00031757	586.7901195168339	62.708	1.4016	62.708	62.392	63.793	0					101	51	4	0	0	0	0.10543	4	14154	14154;14207;14265;14303		31.268	9.5217	1	1030700			19340	3079	12812	12941	26091;26092;26093;26094	26091					-0.01271158528061278
SPHYQEWIL	9	Unmodified	_SPHYQEWIL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7904663085938	2	586.790381	1171.56621	0.71018	0.00041673	-0.19769	-0.00011601	0.51249	0.00030072	586.7901774224486	62.56	0.8946	62.633	62.396	63.29	0.072701					74	34	4	0	0	0	0.091044	2	14020	13979;14020		34.402	11.665	1	1299400			19341	3079	12812	12941	26095;26096	26096					-0.01271158528061278
SPIDTLREIL	10	Unmodified	_SPIDTLREIL_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3446044921875	2	578.832246	1155.64994	0.87437	0.00050611	-0.12681	-7.34E-05	0.74756	0.00043271	578.8321616684381	81.066	0.47954	81.066	80.756	81.235	0					24	15	2	0	0	0	0.31773	1	19783	19783		4.897	0.95262	1	96863			19342	433	12813	12942	26097	26097					0.07833952849023262
SPIDVGPKV	9	Unmodified	_SPIDVGPKV_					0	0	0			REV__ENST00000373874.6_1_20:35220052-35220253:+|nuORF	REV__ENST00000373874.6_1_20:35220052-35220253:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.2637634277344	2	456.263468	910.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.653	1	39.742	39.242	40.242	0.088562								0	0	0	0.28724	1	7062	7062		1.6526	0	1		+		19343	11621	12814	12943	26098	26098					0.05354669040241333
SPIERNEQL	9	Unmodified	_SPIERNEQL_					0	0	0		nc|ENSG00000167380|Q9NYT6-2|ZNF226;ENSG00000167380|ENST00000337433|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2819213867188	2	543.28292	1084.55129	-0.045753	-2.4857E-05	0.45571	0.00024758	0.40995	0.00022272	543.2830448566251	33.244	0.29834	33.244	33.08	33.378	0					18	11	2	0	0	0	0.32831	1	5251	5251		2.9952	0.26005	1	22807			19344	4209	12815	12944	26099	26099					0.012393496039521779
SPIHFKAGPDF	11	Unmodified	_SPIHFKAGPDF_					0	0	0			REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8898620605469	3	405.876746	1214.60841	-0.13939	-5.6574E-05	0.70112	0.00028457	0.56173	0.00022799	405.87707300663806	45.553	0.46682	45.639	45.447	45.914	0.085617					42	17	3	0	0	0	0.33157	1	8891	8891		8.2864	0.13091	1	173990	+		19345	9831	12816	12945	26100	26100					0.009688168803222652
SPIHFKAGPDF	11	Unmodified	_SPIHFKAGPDF_					0	0	0			REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	405.876746	1214.60841	0.05566	2.2591E-05	0.38676	0.00015698	0.44242	0.00017957	405.87697189655785	45.648	0.45672	45.648	45.446	45.902	0	0.0047356	-0.0002526	NaN	8.2864	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141030	+		19346	9831	12816	12945							0.009688168803222652
SPIHFKAGPDF	11	Unmodified	_SPIHFKAGPDF_					0	0	0			REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	405.876746	1214.60841	-0.13939	-5.6574E-05	0.70112	0.00028457	0.56173	0.00022799	405.87707300663806	45.553	0.46682	45.639	45.447	45.914	0.085617	-0.0047356	0.00013017	NaN	8.2864	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173990	+		19347	9831	12816	12945							0.009688168803222652
SPILRDLVL	9	Unmodified	_SPILRDLVL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.322998046875	2	513.321317	1024.62808	0.41641	0.00021375	1.4295	0.00073381	1.846	0.00094757	513.3222434523129	68.146	0.35925	68.146	68.049	68.408	0					20	12	2	0	0	0	0.26705	1	15875	15875		10.8	1.4164	1	79647			19348	1847	12817	12946	26101	26101					0.11675192891084407
SPIQAEQEL	9	Unmodified	_SPIQAEQEL_					0	0	0		nc|ENSG00000110013|Q9HAT2-2|SIAE;ENSG00000110013|ENST00000263593|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2877197265625	2	507.758746	1013.50294	0.13531	6.8707E-05	-0.4067	-0.00020651	-0.27139	-0.0001378	507.7586740080204	49.587	0.50953	49.587	49.367	49.876	0					41	17	3	0	0	0	0.16956	1	10205	10205		28.234	12.085	1	230940			19349	1647	12818	12947	26102	26102					-0.00327144035964011
SPIQAEQEL	9	Unmodified	_SPIQAEQEL_					0	0	0		nc|ENSG00000110013|Q9HAT2-2|SIAE;ENSG00000110013|ENST00000263593|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.28790283203125	2	507.758746	1013.50294	0.12941	6.5708E-05	-0.011675	-5.928E-06	0.11773	5.978E-05	507.75876461632487	49.534	0.41051	49.61	49.384	49.794	0.076607					26	14	2	0	0	0	0.19041	1	10043	10043		23.801	9.3957	1	180320			19350	1647	12818	12947	26103	26103					-0.00327144035964011
SPIRFDILL	9	Unmodified	_SPIRFDILL_					0	0	0		nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	nc|ENSG00000051825|Q99550-2|MPHOSPH9	nc|ENSG00000051825|Q99550-2|MPHOSPH9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7716064453125	2	537.321317	1072.62808	0.67598	0.00036322	0.26435	0.00014204	0.94033	0.00050526	537.3213205256997	78.136	0.46274	78.166	77.938	78.4	0.030159					28	15	3	0	0	0	0.24533	1	18727	18727		12.241	1.4167	1	127460			19351	590	12819	12948	26104	26104					0.09467192891088416
SPISAQDLL	9	Unmodified	_SPISAQDLL_					0	0	0		ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ENSG00000170265|ENST00000610704|ZNF282	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.25823974609375	2	472.258382	942.502212	0.20985	9.9102E-05	-0.1423	-6.7203E-05	0.067545	3.1899E-05	472.25822232485484	67.651	0.56952	67.651	67.428	67.998	0					40	21	3	0	0	0	0.15482	2	15671	15671;15724		23.79	0	1	240510			19352	4380	12820	12949	26105;26106	26105					0.028660613149895653
SPISAQDLL	9	Unmodified	_SPISAQDLL_					0	0	0		ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ENSG00000170265|ENST00000610704|ZNF282	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.75030517578125	2	472.258382	942.502212	0.37286	0.00017608	-0.39928	-0.00018856	-0.026424	-1.2479E-05	472.2581507730774	67.596	0.55461	67.659	67.438	67.992	0.063507					28	18	2	0	0	0	0.10543	2	15560	15545;15560		31.268	0	1	174060			19353	4380	12820	12949	26107;26108	26108					0.028660613149895653
SPISSDQSL	9	Unmodified	_SPISSDQSL_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2294921875	2	467.229822	932.445091	-0.18723	-8.748E-05	-0.086076	-4.0217E-05	-0.27331	-0.0001277	467.2297101898426	43.982	0.46992	43.982	43.773	44.243	0					36	15	3	0	0	0	0.010235	1	8485	8485		66.457	18.708	1	278430			19354	2303	12821	12950	26109	26109					-0.023834059613704994
SPISSDQSL	9	Unmodified	_SPISSDQSL_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2295227050781	2	467.229822	932.445091	-0.22269	-0.00010405	0.054378	2.5407E-05	-0.16831	-7.8642E-05	467.22978221814645	43.863	0.41909	43.952	43.767	44.186	0.088924					37	14	3	0	0	0	0.029291	1	8336	8336		51.63	15.503	1	199510			19355	2303	12821	12950	26110	26110					-0.023834059613704994
SPIVLIDEI	9	Unmodified	_SPIVLIDEI_					0	0	0		tr|U7T657|U7T657_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00362PE=3SV=1	tr|U7T657|U7T657_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00362PE=3SV=1	tr|U7T657|U7T657_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00362PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.79241943359375	2	499.792058	997.569563	0.66963	0.00033468	-0.23289	-0.0001164	0.43674	0.00021828	499.7918044340658	83.901	0.41377	83.901	83.717	84.131	0					33	13	3	0	0	0	0.083124	1	20659	20659		36.127	0	1	305770			19356	13736	12822	12951	26111	26111					0.07068091525934506
SPIVLIDEI	9	Unmodified	_SPIVLIDEI_					0	0	0		tr|U7T657|U7T657_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00362PE=3SV=1	tr|U7T657|U7T657_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00362PE=3SV=1	tr|U7T657|U7T657_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00362PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.792236328125	2	499.792058	997.569563	0.34875	0.0001743	0.12445	6.2199E-05	0.4732	0.0002365	499.79202179733164	83.875	0.49683	83.897	83.696	84.192	0.021744					27	17	2	0	0	0	0.083124	1	20497	20497		36.127	0	1	319980			19357	13736	12822	12951	26112	26112					0.07068091525934506
SPIYLLSCPP	10	Unmodified	_SPIYLLSCPP_					0	0	0			REV__ENST00000392507.7_1_17:45897353-45899174:-|nuORF	REV__ENST00000392507.7_1_17:45897353-45899174:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3172607421875	2	545.286085	1088.55762	0.31225	0.00017026	-0.91197	-0.00049728	-0.59972	-0.00032702	545.285501132207	82.583	1.2958	82.605	82.319	83.615	0.021744					114	45	3	0	0	0	0.25999	1	20088	20088		22.736	22.736	1	626590	+		19358	11693	12823	12952	26113	26113					0.016881515111435874
SPKKSPKKSR	10	Unmodified	_SPKKSPKKSR_					0	0	0			REV__ENSG00000230797|ENST00000429584|YY2	REV__ENSG00000230797|ENST00000429584|YY2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.8552856445312	2	571.853847	1141.69314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.38	1	108.38	107.88	108.88	0								0	0	0	0.33528	1	27950	27950		5.7319	2.4505	1		+		19359	11039	12824	12953	26114	26114					0.12796187416938665
SPLCRVFMP	9	Unmodified	_SPLCRVFMP_					0	0	0		ENST00000593011.5_1_1:152140679-152287408:+|nuORF	ENST00000593011.5_1_1:152140679-152287408:+|nuORF	ENST00000593011.5_1_1:152140679-152287408:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7929077148438	2	525.267173	1048.51979	0.060846	3.1961E-05	-2.1603	-0.0011348	-2.0995	-0.0011028	525.266316361584	35.24	0.30082	35.24	35.088	35.389	0					13	8	2	0	0	0	0.25809	1	5882	5882		2.3027	1.5091	1	16324			19360	7277	12825	12954	26115	26115					-0.0025263795532737277
SPLDPTPTR	9	Unmodified	_SPLDPTPTR_					0	0	0			REV__ENSG00000106780|ENST00000373930|MEGF9	REV__ENSG00000106780|ENST00000373930|MEGF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.26141357421875	2	492.261456	982.50836	-0.11105	-5.4663E-05	-0.032241	-1.5871E-05	-0.14329	-7.0534E-05	492.2614590625514	27.741	0.42442	27.823	27.573	27.998	0.082132					36	28	2	0	0	0	0.33849	1	3495	3495		1.6526	0	1	24239	+		19361	8582	12826	12955	26116	26116					0.016405795465288975
SPLEDIVLQ	9	Unmodified	_SPLEDIVLQ_					0	0	0		ENST00000368849.7_1_1:151554198-151554447:+|nuORF	ENST00000368849.7_1_1:151554198-151554447:+|nuORF	ENST00000368849.7_1_1:151554198-151554447:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2976379394531	2	507.279315	1012.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.117	1	60.19	59.69	60.69	0.072338								0	0	0	0.20792	1	13257	13257		16.942	2.3606	1				19362	6187	12827	12956	26117	26117					0.03830617003529824
SPLGKEDTL	9	Unmodified	_SPLGKEDTL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2557678222656	2	480.25584	958.497126	0.0094304	4.529E-06	-0.07097	-3.4084E-05	-0.06154	-2.9555E-05	480.2557220440965	37.379	1.0782	37.379	37.129	38.207	0					91	38	4	0	0	0	0.0056336	2	6528	6482;6528		80.676	14.219	1	950170			19363	3591	12828	12957	26118;26119	26119					0.01621757452392103
SPLGKEDTL	9	Unmodified	_SPLGKEDTL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2557678222656	2	480.25584	958.497126	0.014886	7.1492E-06	-0.028794	-1.3828E-05	-0.013908	-6.6792E-06	480.255749688043	37.278	1.0447	37.362	37.136	38.18	0.084476					86	37	4	0	0	0	0.0045224	2	6363	6318;6363		90.135	23.678	1	825500			19364	3591	12828	12957	26120;26121	26121					0.01621757452392103
SPLLDEPFL	9	Unmodified	_SPLLDEPFL_					0	0	0		nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2470703125	2	515.776408	1029.53826	0.56909	0.00029352	-0.89707	-0.00046269	-0.32798	-0.00016916	515.7757179636519	84.632	0.28258	84.655	84.547	84.83	0.023125					27	18	2	0	0	0	0.21603	1	20738	20738		20.454	8.8133	1	207680			19365	7495	12829	12958	26122	26122					0.024675184918578452
SPLLDEPFL	9	Unmodified	_SPLLDEPFL_					0	0	0		nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	515.776408	1029.53826	0.8733	0.00045043	-1.2226	-0.00063057	-0.34926	-0.00018014	515.7755146218453	84.67	0.20755	84.67	84.579	84.786	0	0.0074992	-0.00021647	NaN	20.454	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230390			19366	7495	12829	12958							0.024675184918578452
SPLQDVSTI	9	Unmodified	_SPLQDVSTI_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2556457519531	2	480.25584	958.497126	0.014886	7.1492E-06	-0.028794	-1.3828E-05	-0.013908	-6.6792E-06	480.255749688043	37.278	1.0447	37.362	37.136	38.18	0.084476					86	37	4	0	0	0	0.11816	1	6408	6408		28.495	0	1	825500			19367	2669	12830	12959	26123	26123					0.01621757452392103
SPLRWGRA	8	Unmodified	_SPLRWGRA_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7116394042969	2	471.767043	941.519533	-0.063877	-3.0135E-05	-1.3303	-0.00062758	-1.3942	-0.00065771	471.766237217701	35.768	0.32648	35.768	35.617	35.944	0					19	12	2	0	0	0	0.3576	1	6018	6018		2.3027	0	1	28411	+		19368	9217	12831	12960	26124	26124					0.046434464313165336
SPLSSSTAPL	10	Unmodified	_SPLSSSTAPL_					0	0	0			REV__ENSG00000277258|ENST00000620225|PCGF2	REV__ENSG00000277258|ENST00000620225|PCGF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2557678222656	2	480.25584	958.497126	0.0094304	4.529E-06	-0.07097	-3.4084E-05	-0.06154	-2.9555E-05	480.2557220440965	37.379	1.0782	37.379	37.129	38.207	0					91	38	4	0	0	0	0.24016	1	6582	6582		29.082	0	1	950170	+		19369	11139	12832	12961	26125	26125					0.016217574523693656
SPLSSSTAPL	10	Unmodified	_SPLSSSTAPL_					0	0	0			REV__ENSG00000277258|ENST00000620225|PCGF2	REV__ENSG00000277258|ENST00000620225|PCGF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.25592041015625	2	480.25584	958.497126	0.014886	7.1492E-06	-0.028794	-1.3828E-05	-0.013908	-6.6792E-06	480.255749688043	37.278	1.0447	37.362	37.136	38.18	0.084476					86	37	4	0	0	0	0.42901	1	6454	6454		8.7454	0	1	825500	+		19370	11139	12832	12961	26126	26126					0.016217574523693656
SPLVEPTVL	9	Unmodified	_SPLVEPTVL_					0	0	0		KPNA1|p.I492Tfs*114|1|0.08|ENSG00000114030|chr3:122427127-122427127|A/-|frameshift_variant	KPNA1|p.I492Tfs*114|1|0.08|ENSG00000114030|chr3:122427127-122427127|A/-|frameshift_variant	KPNA1|p.I492Tfs*114|1|0.08|ENSG00000114030|chr3:122427127-122427127|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7790222167969	2	477.778951	953.543348	-0.060958	-2.9124E-05	0.27976	0.00013366	0.2188	0.00010454	477.77899364272673	73.965	0.68021	73.965	73.69	74.37	0					61	24	3	0	0	0	0.11022	1	17662	17662		30.225	0	1	1819200			19371	7379	12833	12962	26127	26127					0.0647182235445598
SPLVEPTVL	9	Unmodified	_SPLVEPTVL_					0	0	0		KPNA1|p.I492Tfs*114|1|0.08|ENSG00000114030|chr3:122427127-122427127|A/-|frameshift_variant	KPNA1|p.I492Tfs*114|1|0.08|ENSG00000114030|chr3:122427127-122427127|A/-|frameshift_variant	KPNA1|p.I492Tfs*114|1|0.08|ENSG00000114030|chr3:122427127-122427127|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7789001464844	2	477.778951	953.543348	0.12451	5.9488E-05	0.085031	4.0626E-05	0.20954	0.00010011	477.7789132555586	73.916	0.75152	73.965	73.645	74.396	0.048546					68	27	3	0	0	0	0.11022	1	17487	17487		30.225	0	1	973190			19372	7379	12833	12962	26128	26128					0.0647182235445598
SPLVTGGGHHL	11	Unmodified	_SPLVTGGGHHL_					0	0	0			REV__TICRR|p.M814Ifs*5|1|0.08|ENSG00000140534|chr15:89601849-89601850|-/TACGTAGGTTT|frameshift_variant	REV__TICRR|p.M814Ifs*5|1|0.08|ENSG00000140534|chr15:89601849-89601850|-/TACGTAGGTTT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7880859375	2	537.788173	1073.56179	0.24808	0.00013341	0.032788	1.7633E-05	0.28086	0.00015105	537.7882146283914	34.1	0.71545	34.176	33.902	34.617	0.076244					79	28	4	0	0	0	0.33592	1	5444	5444		13.906	0	1	342390	+		19373	9376	12834	12963	26129	26129					0.027953770490512397
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(48)DIFDM(48)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.72802734375	2	567.727743	1133.44093	0.76878	0.00043646	-0.064405	-3.6565E-05	0.70437	0.00039989	567.7275311206791	80.626	0.64581	80.626	80.313	80.959	0					51	22	3	0	0	0	0.033885	1	19659	19659		48.346	27.892	1	582060			19374	973	12835	12964	26130	26130		53;54			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(55)DIFDM(55)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7279663085938	2	567.727743	1133.44093	0.74755	0.00042441	-0.42959	-0.00024389	0.31796	0.00018051	567.7275230532482	81.496	0.66812	81.496	81.235	81.903	0					57	22	4	0	0	0	0.024893	1	19923	19923		54.774	27.89	1	553350			19375	973	12835	12964	26131	26131		53;54			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(55)DIFDM(55)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7279663085938	2	567.727743	1133.44093	0.55937	0.00031757	0.65844	0.00037382	1.2178	0.00069139	567.7282197707067	84.236	1.8074	84.236	82.625	84.432	0					167	74	3	0	0	0	0.024893	5	20498	20498;20621;20667;20711;20773		54.774	37.831	1	839760			19376	973	12835	12964	26132;26133;26134;26135;26136	26132		53;54			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(61)DIFDM(61)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7279663085938	2	567.727743	1133.44093	0.64105	0.00036394	0.19795	0.00011238	0.839	0.00047633	567.7276235466751	80.551	0.61983	80.575	80.353	80.973	0.023605					64	21	4	0	0	0	0.015682	1	19486	19486		61.357	39.611	1	689640			19377	973	12835	12964	26137	26137		53;54			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(48)DIFDM(48)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.72802734375	2	567.727743	1133.44093	0.42642	0.00024209	-0.3439	-0.00019524	0.082513	4.6845E-05	567.7276113790517	81.505	0.73653	81.527	81.255	81.992	0.021866					62	26	4	0	0	0	0.033885	1	19741	19741		48.346	21.462	1	504830			19378	973	12835	12964	26138	26138		53;54			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(64)DIFDM(64)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7279663085938	2	567.727743	1133.44093	0.28498	0.00016179	0.6275	0.00035625	0.91248	0.00051804	567.7282157655667	84.236	1.6085	84.258	82.795	84.404	0.021751					158	62	3	0	0	0	0.011655	5	20452	20284;20333;20452;20505;20555		64.236	34.474	1	1149600			19379	973	12835	12964	26139;26140;26141;26142;26143	26141		53;54			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(46)DIFDM(46)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7286376953125	2	567.727743	1133.44093	0.045512	2.5838E-05	0.46828	0.00026585	0.51379	0.00029169	567.7281533136738	90.287	3.8182	90.321	88.681	92.499	0.034065					204	146	3	0	0	0	0.037705	2	22235	22235;22422		46.021	24.274	1	355990			19380	973	12835	12964	26144;26145	26144		53;54			-0.12044954770931326
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-96)DIFDM(96)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.73046875	2	559.730286	1117.44602	0.63181	0.00035364	-0.37132	-0.00020784	0.26048	0.0001458	559.7300535108197	93.329	0.69113	93.329	93.078	93.77	0					72	26	4	0	0	0	0.0042542	2	23539	23539;23583		100.37	82.237	2	529040			19381	973	12835	12965	26146;26147	26146		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-130)DIFDM(130)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7302856445312	2	559.730286	1117.44602	0.39373	0.00022039	-0.31895	-0.00017852	0.074787	4.186E-05	559.7301015277704	95.973	0.97391	95.973	95.604	96.578	0					156	47	4	0	0	0	0.00038046	5	24301	24255;24301;24342;24384;24427		133.7	111.96	2	1031600			19382	973	12835	12965	26148;26149;26150;26151;26152	26149		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-35)DIFDM(35)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7308349609375	2	559.730286	1117.44602	0.53222	0.0002979	0.41335	0.00023137	0.94557	0.00052926	559.7305902876764	96.87	0.9237	96.87	96.515	97.438	0					84	43	3	0	0	0	0.028398	2	24501	24501;24544		52.268	35.326	2	416440			19383	973	12835	12965	26153;26154	26153		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-73)DIFDM(73)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.73046875	2	559.730286	1117.44602	0.63318	0.00035441	-0.2803	-0.00015689	0.35288	0.00019752	559.7301135978147	93.351	0.55702	93.389	93.117	93.674	0.037369					69	24	4	0	0	0	0.0064512	2	23360	23360;23407		78.149	61.207	2	431410			19384	973	12835	12965	26155;26156	26155		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPM(0.015)DIFDM(0.985)F		SPM(-18)DIFDM(18)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7302856445312	2	559.730286	1117.44602	0.60971	0.00034128	0.6604	0.00036965	1.2701	0.00071092	559.730535324149	96.823	0.60291	96.862	96.472	97.075	0.039772					70	30	3	0	0	0	0.028398	1	24375	24375		52.268	36.421	2	331610			19385	973	12835	12965	26157	26157		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-57)DIFDM(57)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7294921875	2	559.730286	1117.44602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.698	1	95.737	95.237	96.237	0.038872								0	0	0	0.022836	1	24081	24081		61.357	32.871	2				19386	973	12835	12965	26158	26158		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-96)DIFDM(96)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7301635742188	2	559.730286	1117.44602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.846	1	95.885	95.385	96.385	0.038872								0	0	0	2.9699E-05	1	24125	24125		100.37	64.327	2				19387	973	12835	12965	26159	26159		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-140)DIFDM(140)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7303466796875	2	559.730286	1117.44602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.983	1	96.022	95.522	96.522	0.039772								0	0	0	3.7528000000000003E-19	1	24167	24167		147.83	103.42	2				19388	973	12835	12965	26160	26160		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-110)DIFDM(110)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7305297851562	2	559.730286	1117.44602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.141	1	96.181	95.681	96.681	0.039772								0	0	0	1.8843E-08	1	24215	24215		112.59	76.549	2				19389	973	12835	12965	26161	26161		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-77)DIFDM(77)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.73046875	2	559.730286	1117.44602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.276	1	96.316	95.816	96.816	0.039772								0	0	0	0.0024617	1	24257	24257		81.613	45.569	2				19390	973	12835	12965	26162	26162		53;54			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-38)DIFDM(38)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.730712890625	2	559.730286	1117.44602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.517	1	96.557	96.057	97.057	0.039772								0	0	0	0.022836	1	24331	24331		61.357	32.871	2				19391	973	12835	12965	26163	26163		53;54			-0.10800650908345233
SPMDIFDMF	9	Unmodified	_SPMDIFDMF_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7330932617188	2	551.732828	1101.4511	0.099786	5.5055E-05	0.097213	5.3635E-05	0.197	0.00010869	551.7328658756004	106.31	0.37218	106.31	106.17	106.54	0					62	34	2	0	0	0	0.037705	2	27418	27379;27418		46.021	30.174	1	112650			19392	973	12835	12966	26164;26165	26165					-0.09556347045713665
SPMDIFDMF	9	Unmodified	_SPMDIFDMF_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7327270507812	2	551.732828	1101.4511	0.4548	0.00025093	0.11707	6.4593E-05	0.57188	0.00031552	551.7325889898489	106.14	0.10986	106.17	106.12	106.23	0.029732					17	12	2	0	0	0	0.25979	1	27181	27181		11.64	3.7301	1	28359			19393	973	12835	12966	26166	26166					-0.09556347045713665
SPMDIFDMF	9	Unmodified	_SPMDIFDMF_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7330322265625	2	551.732828	1101.4511	0.44804	0.0002472	-0.22786	-0.00012572	0.22018	0.00012148	551.7326784489912	106.32	0.3311	106.35	106.23	106.56	0.029739					50	35	2	0	0	0	0.25979	1	27212	27212		11.64	6.8843	1	100350			19394	973	12835	12966	26167	26167					-0.09556347045713665
SPMMSPTPSL	10	Unmodified	_SPMMSPTPSL_					0	0	0			REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.245849609375	2	524.246103	1046.47765	-0.1551	-8.1312E-05	0.051659	2.7082E-05	-0.10344	-5.4229E-05	524.2461362944894	25.306	0.53545	25.402	25.226	25.762	0.096075					130	44	4	0	0	0	0.45794	1	2860	2860		3.2813	0	1	186380	+		19395	8373	12836	12967	26168	26168					-0.04372658154375131
SPNAEIHIL	9	Unmodified	_SPNAEIHIL_					0	0	0		ENST00000565736.1_1_16:29814793-29815446:+|nuORF;nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22	ENST00000565736.1_1_16:29814793-29815446:+|nuORF	ENST00000565736.1_1_16:29814793-29815446:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2723388671875	2	497.271824	992.529095	0.26501	0.00013178	1.1862	0.00058985	1.4512	0.00072164	497.2724589070468	51.702	0.40959	51.702	51.448	51.858	0					34	13	3	0	0	0	0.004443	1	10832	10832		93.166	47.466	1	305830			19396	884	12837	12968	26169	26169					0.03253169926199462
SPNAEIHIL	9	Unmodified	_SPNAEIHIL_					0	0	0		ENST00000565736.1_1_16:29814793-29815446:+|nuORF;nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22	ENST00000565736.1_1_16:29814793-29815446:+|nuORF	ENST00000565736.1_1_16:29814793-29815446:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2730712890625	2	497.271824	992.529095	0.34575	0.00017193	1.4729	0.00073245	1.8187	0.00090438	497.27256036459454	51.638	0.47393	51.708	51.556	52.03	0.069874					34	16	3	0	0	0	0.0047429	1	10692	10692		83.429	45.253	1	292260			19397	884	12837	12968	26170	26170					0.03253169926199462
SPNSDDTVL	9	Unmodified	_SPNSDDTVL_					0	0	0		ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.21929931640625	2	474.219454	946.424355	-0.56449	-0.00026769	0.27672	0.00013123	-0.28776	-0.00013646	474.2195035755054	42.251	0.63569	42.341	42.094	42.73	0.089764					55	23	3	0	0	0	0.19307	1	7812	7812		19.362	2.4196	1	414760			19398	1314	12838	12969	26171	26171					-0.05099996341050428
SPNVSAEK	8	Unmodified	_SPNVSAEK_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.22021484375	2	416.213975	830.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.155	1	50.155	49.655	50.655	0								0	0	0	0.38822	1	10360	10360		4.3292	0	1		+		19399	11088	12839	12970	26172	26172					-0.008593539246589899
SPNYDHVVL	9	Unmodified	_SPNYDHVVL_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.261474609375	2	522.261456	1042.50836	0.42248	0.00022064	-0.23228	-0.00012131	0.1902	9.9335E-05	522.2611691707682	47.299	0.82409	47.299	47.087	47.911	0					51	26	3	0	0	0	0.0077293	2	9524	9483;9524		74.2	39.798	1	659550			19400	948	12840	12971	26173;26174	26174					-0.011194204534831442
SPNYDHVVL	9	Unmodified	_SPNYDHVVL_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.261474609375	2	522.261456	1042.50836	0.32653	0.00017053	-0.09269	-4.8408E-05	0.23384	0.00012212	522.26126566918	47.216	0.64998	47.299	47.06	47.709	0.083096					53	25	3	0	0	0	0.02143	2	9322	9322;9369		57.249	29.62	1	512240			19401	948	12840	12971	26175;26176	26175					-0.011194204534831442
SPPEVPEPTF	10	Unmodified	_SPPEVPEPTF_					0	0	0		ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7496948242188	2	550.268947	1098.52334	0.63799	0.00035106	0.48804	0.00026856	1.126	0.00061962	550.2692119885879	64.752	0.6519	64.752	64.436	65.088	0					29	23	2	0	0	0	0.31219	1	14860	14860		17.113	4.5813	1	87925			19402	1255	12841	12972	26177	26177					-0.0219797337615546
SPPEVPEPTF	10	Unmodified	_SPPEVPEPTF_					0	0	0		ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	550.268947	1098.52334	0.56111	0.00030876	0.57342	0.00031553	1.1345	0.0006243	550.2692496615697	64.801	0.4252	64.87	64.506	64.931	0.068916	0.058908	3.7174E-05	NaN	17.113	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104900			19403	1255	12841	12972							-0.0219797337615546
SPPLSLLVL	9	Unmodified	_SPPLSLLVL_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32861328125	2	469.799686	937.584819	0.32744	0.00015383	-0.16948	-7.9622E-05	0.15796	7.4208E-05	469.7996133200073	87.812	0.222	87.812	87.633	87.855	0					9	7	2	0	0	0	0.25644	1	21832	21832		3.9444	0	1	44495			19404	1517	12842	12973	26178	26178					0.11353003113799787
SPPPFPTL	8	Unmodified	_SPPPFPTL_					0	0	0			REV__ENST00000401558.6_1_2:61764944-61765121:-|nuORF	REV__ENST00000401558.6_1_2:61764944-61765121:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	428.2342834472656	2	428.234179	854.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.633	1	61.633	61.133	62.133	0								0	0	0	0.12918	1	13856	13856		74.396	0	1		+		19405	11754	12843	12974	26179	26179					0.02075612465762333
SPPPSSSLT	9	Unmodified	_SPPPSSSLT_					0	0	0		ENST00000330714.7_1_21:42780169-42780397:+|nuORF	ENST00000330714.7_1_21:42780169-42780397:+|nuORF	ENST00000330714.7_1_21:42780169-42780397:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.75848388671875	2	436.721633	871.428712	0.34414	0.00015029	-1.1031	-0.00048177	-0.759	-0.00033147	436.7212131107176	47.496	0.49136	47.579	47.297	47.788	0.083096					29	19	2	0	0	0	0.25174	1	9468	9468		7.2892	0	1	53637			19406	6054	12844	12975	26180	26180					-0.01214487127481334
SPPQINRDQ	9	Unmodified	_SPPQINRDQ_					0	0	0			REV__PCDH15|p.I385Tfs*32|1|0.2|ENSG00000150275|chr10:54195822-54195834|TTTTCATCCAGTA/-|frameshift_variant	REV__PCDH15|p.I385Tfs*32|1|0.2|ENSG00000150275|chr10:54195822-54195834|TTTTCATCCAGTA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7673950195312	2	527.767437	1053.52032	0.048178	2.5427E-05	-0.24744	-0.00013059	-0.19926	-0.00010516	527.7672698701886	20.924	0.4243	21.024	20.851	21.275	0.099499					105	47	3	0	0	0	0.33849	1	1657	1657		1.6526	0.32309	1	59272	+		19407	9625	12845	12976	26181	26181					-0.004298037102898888
SPPRAKKK	8	Unmodified	_SPPRAKKK_					0	0	0			REV__ENST00000504750.5_1_4:190947571-190948256:-|nuORF	REV__ENST00000504750.5_1_4:190947571-190948256:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.2634582519531	2	456.292894	910.571235	0.16662	7.6029E-05	-3.7734	-0.0017218	-3.6068	-0.0016457	456.2908588164212	38.906	0.1308	38.993	38.939	39.07	0.08688					6	4	2	0	0	0	0.3576	1	6825	6825		8.5933	2.8329	1	5556.4	+		19408	12216	12846	12977	26182	26182					0.11237190125223151
SPPRQLSES	9	Unmodified	_SPPRQLSES_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B;ENST00000478885.1_1_2:24008884-24009082:-|nuORF	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.75689697265625	2	500.756538	999.498523	-0.078606	-3.9362E-05	0.042536	2.13E-05	-0.036069	-1.8062E-05	500.75668582940295	30.071	0.28123	30.146	30.031	30.312	0.075403					35	18	2	0	0	0	0.34704	1	4194	4194		0.52476	0	1	27453			19409	2088	12847	12978	26183	26183					-0.001246084588501617
SPQAEQPSL	9	Unmodified	_SPQAEQPSL_					0	0	0		nc|ENSG00000091732|Q86WB0-3|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;ENSG00000091732|ENST00000358303|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.73773193359375	2	478.737814	955.461075	-0.58247	-0.00027885	0.01407	6.7359E-06	-0.5684	-0.00027212	478.7379220332262	40.74	0.56919	40.74	40.505	41.075	0					52	19	4	0	0	0	0.081383	1	7501	7501		36.506	8.8774	1	204230			19410	1067	12848	12979	26184	26184					-0.018436997244748454
SPQAEQPSL	9	Unmodified	_SPQAEQPSL_					0	0	0		nc|ENSG00000091732|Q86WB0-3|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;ENSG00000091732|ENST00000358303|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7377014160156	2	478.737814	955.461075	-0.44559	-0.00021332	0.39528	0.00018923	-0.050313	-2.4087E-05	478.7378712288312	40.62	0.435	40.709	40.518	40.953	0.089645					37	16	3	0	0	0	0.22861	1	7336	7336		15.248	3.7538	1	158610			19411	1067	12848	12979	26185	26185					-0.018436997244748454
SPQEDGVEL	9	Unmodified	_SPQEDGVEL_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2271728515625	2	487.227279	972.440005	0.011831	5.7644E-06	-0.094039	-4.5818E-05	-0.082207	-4.0054E-05	487.2272008088709	48.665	0.60813	48.665	48.424	49.032	0					43	20	3	0	0	0	0.064247	1	9897	9897		40.239	13.898	1	311480			19412	2545	12849	12980	26186	26186					-0.047317098239886946
SPQEDGVEL	9	Unmodified	_SPQEDGVEL_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2269287109375	2	487.227279	972.440005	0.041851	2.0391E-05	0.025962	1.2649E-05	0.067813	3.304E-05	487.22725501263466	48.583	0.59597	48.663	48.414	49.01	0.080032					39	19	3	0	0	0	0.11198	1	9738	9738		29.841	13.993	1	213870			19413	2545	12849	12980	26187	26187					-0.047317098239886946
SPQEFIHEL	9	Unmodified	_SPQEFIHEL_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.794189453125	2	550.274564	1098.53457	0.24999	0.00013756	0.67199	0.00036978	0.92197	0.00050734	550.2749976651659	56.689	0.4033	56.689	56.57	56.974	0					22	14	2	0	0	0	0.062017	2	12387	12336;12387		40.725	21.468	1	146540			19414	2985	12850	12981	26188;26189	26189					-0.010751512820206699
SPQEFIHEL	9	Unmodified	_SPQEFIHEL_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7940673828125	2	550.274564	1098.53457	0.41267	0.00022708	-0.74839	-0.00041182	-0.33572	-0.00018474	550.2744751289043	56.703	0.34331	56.769	56.571	56.914	0.066452					19	11	2	0	0	0	0.078774	1	12217	12217		37.075	22.669	1	82513			19415	2985	12850	12981	26190	26190					-0.010751512820206699
SPQSNSPVL	9	Unmodified	_SPQSNSPVL_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.7396240234375	2	464.740357	927.46616	-0.49318	-0.0002292	-1.0397	-0.00048321	-1.5329	-0.00071241	464.7397958318303	41.427	0.54854	41.427	41.197	41.745	0					40	19	3	0	0	0	0.15282	1	7730	7730		24.021	2.4836	1	262730			19416	4931	12851	12982	26191	26191					-0.0004739586186133238
SPQSNSPVL	9	Unmodified	_SPQSNSPVL_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.73980712890625	2	464.740357	927.46616	-0.54644	-0.00025395	-0.50269	-0.00023362	-1.0491	-0.00048757	464.7399799349139	41.364	0.54926	41.454	41.211	41.76	0.089764					49	21	3	0	0	0	0.15282	1	7566	7566		24.021	2.4836	1	202330			19417	4931	12851	12982	26192	26192					-0.0004739586186133238
SPRKKRPRQT	10	Unmodified	_SPRKKRPRQT_					0	0	0		nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT	nc|ENSG00000107447|P04053-2|DNTT	nc|ENSG00000107447|P04053-2|DNTT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.3809204101562	2	627.381094	1252.74764	-0.22375	-0.00014037	2.033	0.0012754	1.8092	0.0011351	627.3819004562416	113.67	0.28258	113.67	113.61	113.89	0					72	41	2	0	0	0	0.44496	1	29093	29093		5.7319	2.7366	1	175300			19418	1556	12852	12983	26193	26193					0.13137199288371448
SPRKKRPRQT	10	Unmodified	_SPRKKRPRQT_					0	0	0		nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT	nc|ENSG00000107447|P04053-2|DNTT	nc|ENSG00000107447|P04053-2|DNTT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	627.381094	1252.74764	0.30102	0.00018885	2.4544	0.0015398	2.7554	0.0017287	627.8840114051541	113.64	0.047287	113.65	113.62	113.67	0.013809	-0.0092291	0.00045485	NaN	5.7319	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108170			19419	1556	12852	12983							0.13137199288371448
SPSALGPFVL	10	Unmodified	_SPSALGPFVL_					0	0	0			REV__ENST00000206474.11_2_14:23421864-23426291:-|nuORF	REV__ENST00000206474.11_2_14:23421864-23426291:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.279052734375	2	494.279118	986.543683	0.36533	0.00018057	0.11588	5.7279E-05	0.48121	0.00023785	494.27913196126735	83.589	0.5869	83.611	83.361	83.948	0.021744					38	20	3	0	0	0	0.41688	1	20381	20381		10.074	0	1	151340	+		19420	11167	12853	12984	26194	26194					0.049872420743326984
SPSALGPFVL	10	Unmodified	_SPSALGPFVL_					0	0	0			REV__ENST00000206474.11_2_14:23421864-23426291:-|nuORF	REV__ENST00000206474.11_2_14:23421864-23426291:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	494.279118	986.543683	0.67463	0.00033345	-0.19419	-9.5986E-05	0.48043	0.00023747	494.2790054403816	83.575	0.43837	83.575	83.371	83.809	0	-0.018037	-0.00015826	NaN	10.074	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186400	+		19421	11167	12853	12984							0.049872420743326984
SPSALGPFVL	10	Unmodified	_SPSALGPFVL_					0	0	0			REV__ENST00000206474.11_2_14:23421864-23426291:-|nuORF	REV__ENST00000206474.11_2_14:23421864-23426291:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	494.279118	986.543683	0.36533	0.00018057	0.11588	5.7279E-05	0.48121	0.00023785	494.27913196126735	83.589	0.5869	83.611	83.361	83.948	0.021744	0.018037	0.00014827	NaN	10.074	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151340	+		19422	11167	12853	12984							0.049872420743326984
SPSAVFATR	9	Unmodified	_SPSAVFATR_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.712890625	2	468.250892	934.48723	-0.086124	-4.0328E-05	1.0679	0.00050005	0.98178	0.00045972	468.2512467510973	35.468	1.0103	35.547	34.933	35.943	0.078831					55	39	3	0	0	0	0.23347	1	5786	5786		18.373	7.5492	1	66916			19423	3825	12854	12985	26195	26195					0.0173661423766589
SPSDADREL	9	Unmodified	_SPSDADREL_					0	0	0		MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3	MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.23052978515625	2	495.230353	988.446153	0.0076344	3.7808E-06	-0.72878	-0.00036091	-0.72114	-0.00035713	495.2299633136673	28.265	0.79522	28.265	27.944	28.739	0					70	39	2	0	0	0	0.15281	1	3749	3749		37.075	7.2341	1	87269			19424	5658	12855	12986	26196	26196					-0.04853191592474104
SPSDADREL	9	Unmodified	_SPSDADREL_					0	0	0		MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3	MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.23040771484375	2	495.230353	988.446153	-0.0075279	-3.7281E-06	0.32008	0.00015851	0.31255	0.00015478	495.2304149804175	28.025	0.30895	28.107	27.923	28.232	0.082132					43	18	3	0	0	0	0.15281	1	3591	3591		37.075	7.2341	1	83053			19425	5658	12855	12986	26197	26197					-0.04853191592474104
SPSDAEPKL	9	Unmodified	_SPSDAEPKL_					0	0	0		SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|1|1|sense;SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|1|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|1|1|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|1|1|sense;chr20:8644500-8646102|134|11.7|0.0|12.94|+|2|TE_info:SVA_D,SVA_D_dup1365,SVA,Retroposon,donor,+,8643757,8644500|None,PLCB1|1;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|12|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|27|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|38|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|14|2|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|1|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|13|2|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|28|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|32|3|sense;chr4:15790918-15816511|304|27.04|0.09|8.21|+|2|TE_info:SVA_D,SVA_D_dup355,SVA,Retroposon,donor,+,15790204,15790918|None,CD38|1;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|33|3|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|32|3|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|1|1|sense;SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|24|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|20|2|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|31|3|sense;chr12:14354815-14423909|112|15.09|0.0|20.53|+|1|TE_info:SVA_C,SVA_C_dup319,SVA,Retroposon,donor,+,14354081,14354815|None,ATF7IP|1;SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|15|2|sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|1|1|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|1|1|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|34|3|sense	SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|1|1|sense	SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|1|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.25836181640625	2	472.24019	942.465826	-0.24814	-0.00011718	0.21694	0.00010245	-0.0312	-1.4734E-05	472.24038418057347	33.646	0.4983	33.646	33.434	33.933	0					21	17	2	0	0	0	0.24791	1	5369	5369		10.074	2.7847	1	29853			19426	146	12856	12987	26198	26198					-0.007708155817113038
SPSEVTYEL	9	Unmodified	_SPSEVTYEL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7454223632812	2	512.745305	1023.47606	0.28228	0.00014474	0.058583	3.0038E-05	0.34087	0.00017478	512.7452226591874	57.005	0.46492	57.005	56.748	57.213	0					39	16	4	0	0	0	0.028398	2	12467	12423;12467		52.268	14.294	1	391420			19427	979	12857	12988	26199;26200	26200					-0.03474252647129106
SPSEVTYEL	9	Unmodified	_SPSEVTYEL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7457885742188	2	512.745305	1023.47606	0.38638	0.00019812	0.10626	5.4482E-05	0.49264	0.0002526	512.7452268435455	56.925	0.38364	56.991	56.795	57.179	0.066452					33	13	3	0	0	0	0.047633	2	12273	12273;12317		43.858	13.222	1	355820			19428	979	12857	12988	26201;26202	26201					-0.03474252647129106
SPSFGDPQL	9	Unmodified	_SPSFGDPQL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.23590087890625	2	474.227082	946.439611	-0.088605	-4.2019E-05	0.38579	0.00018295	0.29719	0.00014094	474.22726654260725	58.603	0.43948	58.673	58.505	58.945	0.070477					23	14	2	0	0	0	0.27929	1	12783	12783		9.3831	2.0939	1	112920			19429	5286	12858	12989	26203	26203					-0.0357508475318582
SPSFGDPQL	9	Unmodified	_SPSFGDPQL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	474.227082	946.439611	-0.37174	-0.00017629	0.65633	0.00031125	0.2846	0.00013496	474.22721178981305	58.706	0.42948	58.706	58.473	58.903	0	0.016202	0.00014658	NaN	9.3831	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151250			19430	5286	12858	12989							-0.0357508475318582
SPSKESVVL	9	Unmodified	_SPSKESVVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.26629638671875	2	473.266207	944.517862	0.060974	2.8857E-05	-0.12609	-5.9674E-05	-0.065116	-3.0817E-05	473.26610277726724	38.486	0.41441	38.486	38.302	38.716	0					28	13	3	0	0	0	0.32831	1	6854	6854		2.9952	0	1	35722			19431	937	12859	12990	26204	26204					0.04338347832049294
SPSKESVVL	9	Unmodified	_SPSKESVVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	473.266207	944.517862	0.074465	3.5242E-05	0.00090251	4.2713E-07	0.075368	3.5669E-05	473.2661942723475	38.371	0.44648	38.457	38.236	38.682	0.08688	-0.014498	6.0619E-05	NaN	2.9952	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30875			19432	937	12859	12990							0.04338347832049294
SPSKLIVE	8	Unmodified	_SPSKLIVE_					0	0	0			REV__STMN3|p.N125Kfs*2|1|0.16|ENSG00000197457|chr20:63642216-63642217|-/T|frameshift_variant	REV__STMN3|p.N125Kfs*2|1|0.16|ENSG00000197457|chr20:63642216-63642217|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.7589416503906	2	436.758018	871.501483	0.51386	0.00022443	0.76093	0.00033234	1.2748	0.00055677	436.75820838003085	47.71	0.6553	47.71	47.467	48.123	0					34	22	2	0	0	0	0.50815	1	9685	9685		11.64	0	1	121340	+		19433	10858	12860	12991	26205	26205					0.06059266665965879
SPSPSPSTL	9	Unmodified	_SPSPSPSTL_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.7589416503906	2	436.721633	871.428712	0.55277	0.00024141	-1.0641	-0.00046472	-0.51134	-0.00022331	436.72115349690824	47.506	0.81849	47.506	47.2	48.018	0					37	27	2	0	0	0	0.25174	1	9685	9685		7.2892	7.2892	1	73816	+		19434	9614	12861	12992	26206	26206					-0.012144871274585967
SPSQDQEKL	9	Unmodified	_SPSQDQEKL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.25390625	2	516.253828	1030.4931	-0.17261	-8.9111E-05	0.17909	9.2458E-05	0.0064835	3.3471E-06	516.2538494859381	23.919	0.50319	23.919	23.758	24.261	0					81	45	2	0	0	0	0.20162	1	2567	2567		18.373	7.5736	1	94227			19435	3384	12862	12993	26207	26207					-0.020923320413203328
SPSQDQEKL	9	Unmodified	_SPSQDQEKL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2537841796875	2	516.253828	1030.4931	0.030051	1.5514E-05	0.028439	1.4682E-05	0.05849	3.0196E-05	516.253800512785	23.747	0.45087	23.847	23.659	24.11	0.099739					102	42	3	0	0	0	0.25162	1	2400	2400		8.1555	3.2585	1	94971			19436	3384	12862	12993	26208	26208					-0.020923320413203328
SPSSDHKLL	9	Unmodified	_SPSSDHKLL_					0	0	0			REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.26165771484375	2	492.261456	982.50836	-0.10872	-5.352E-05	0.024027	1.1828E-05	-0.084695	-4.1692E-05	492.26158619851816	27.812	0.41071	27.812	27.684	28.095	0					37	24	2	0	0	0	0.33849	1	3666	3666		1.6526	0.17072	1	19064	+		19437	8348	12863	12994	26209	26209					0.01640579546540266
SPSSDHKLL	9	Unmodified	_SPSSDHKLL_					0	0	0			REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.261456	982.50836	-0.11105	-5.4663E-05	-0.032241	-1.5871E-05	-0.14329	-7.0534E-05	492.2614590625514	27.741	0.42442	27.823	27.573	27.998	0.082132	0.0057531	-2.189E-05	NaN	1.6526	36	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24239	+		19438	8348	12863	12994							0.01640579546540266
SPSVGDRSF	9	Unmodified	_SPSVGDRSF_					0	0	0			REV__ENST00000376955.8_1_17:43215336-43220144:+|nuORF	REV__ENST00000376955.8_1_17:43215336-43220144:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.2298583984375	2	476.230156	950.445759	-0.16444	-7.831E-05	0.30265	0.00014413	0.13821	6.582E-05	476.23024507034023	34.961	1.2765	35.04	34.802	36.078	0.078827					111	49	4	0	0	0	0.30005	1	5756	5756		6.7232	0	1	723400	+		19439	11647	12864	12995	26210	26210					-0.03144566521655179
SPSYPEISF	9	Unmodified	_SPSYPEISF_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7427368164062	2	513.742565	1025.47058	0.56649	0.00029103	-0.75584	-0.00038831	-0.18936	-9.728E-05	513.7423887871536	70.491	0.74706	70.491	70.114	70.861	0					72	27	4	0	0	0	0.0046499	2	16558	16558;16608		85.272	36.926	1	952020			19440	3366	12865	12996	26211;26212	26211					-0.0411393143897385
SPSYPEISF	9	Unmodified	_SPSYPEISF_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7428588867188	2	513.742565	1025.47058	0.56825	0.00029194	-1.1132	-0.00057191	-0.54497	-0.00027997	513.7423960365902	70.437	0.85123	70.497	70.148	70.999	0.060562					91	33	4	0	0	0	0.015682	2	16387	16337;16387		61.357	21.4	1	706410			19441	3366	12865	12996	26213;26214	26214					-0.0411393143897385
SPSYPEISF	9	Unmodified	_SPSYPEISF_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2757568359375	2	513.742565	1025.47058	0.43433	0.00022314	-2.5112	-0.0012901	-2.0769	-0.001067	514.2427062607659	71.361	0.3589	71.419	71.133	71.492	0.058578					17	12	2	0	0	0	0.25174	1	16598	16598		7.2892	2.0586	1	63511			19442	3366	12865	12996	26215	26215					-0.0411393143897385
SPTDWTWP	8	Unmodified	_SPTDWTWP_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.23040771484375	2	495.2218	988.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.028	1	28.111	27.611	28.611	0.082134								0	0	0	0.38822	1	3591	3591		13.508	0	1		+		19443	10494	12866	12997	26216	26216					-0.06563067407626022
SPTEVVERL	9	Unmodified	_SPTEVVERL_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2813720703125	2	515.282389	1028.55022	0.078033	4.0209E-05	-1.2248	-0.00063111	-1.1467	-0.0005909	515.2817325106048	46.145	0.4286	46.145	45.955	46.384	0					31	14	3	0	0	0	0.071704	2	9144	9144;9196		38.615	13.624	1	109690			19444	614	12867	12998	26217;26218	26217					0.03709135235044414
SPTEVVERL	9	Unmodified	_SPTEVVERL_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.28076171875	2	515.282389	1028.55022	0.11605	5.98E-05	-0.97285	-0.00050129	-0.85679	-0.00044149	515.2817539341897	46.072	0.38221	46.158	45.954	46.336	0.085617					22	13	2	0	0	0	0.1646	2	8983	8983;9024		22.658	7.4096	1	98608			19445	614	12867	12998	26219;26220	26219					0.03709135235044414
SPTGDNFN	8	Unmodified	_SPTGDNFN_					0	0	0			REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.6557312011719	2	426.180132	850.345711	-0.27891	-0.00011887	-0.043568	-1.8568E-05	-0.32248	-0.00013743	426.1800830742542	28.001	0.33232	28.083	27.923	28.256	0.082132					28	19	2	0	0	0	0.34837	1	3583	3583		21.747	21.747	1	21609	+		19446	7746	12868	12999	26221	26221					-0.08544803855477312
SPTKLDVTL	9	Unmodified	_SPTKLDVTL_					0	0	0		nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-5|MAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2819519042969	2	487.281857	972.549162	0.024766	1.2068E-05	0.073769	3.5946E-05	0.098535	4.8014E-05	487.2818002937504	50.139	0.52601	50.139	49.85	50.376	0					48	18	3	0	0	0	0.024248	1	10346	10346		55.235	11.376	1	393770			19447	563	12869	13000	26222	26222					0.06178920866148019
SPTKLDVTL	9	Unmodified	_SPTKLDVTL_					0	0	0		nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-5|MAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2818603515625	2	487.281857	972.549162	0.09002	4.3865E-05	-0.080425	-3.919E-05	0.0095947	4.6753E-06	487.2816970538453	50.062	0.77003	50.136	49.868	50.638	0.07312					48	26	3	0	0	0	0.029489	2	10190	10190;10240		51.488	14.982	1	298150			19448	563	12869	13000	26223;26224	26223					0.06178920866148019
SPVKISEI	8	Unmodified	_SPVKISEI_					0	0	0		ENSG00000168994|ENST00000380283|PXDC1	ENSG00000168994|ENST00000380283|PXDC1	ENSG00000168994|ENST00000380283|PXDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.7581787109375	2	436.758018	871.501483	0.51386	0.00022443	0.76093	0.00033234	1.2748	0.00055677	436.75820838003085	47.71	0.6553	47.71	47.467	48.123	0					34	22	2	0	0	0	0.37883	1	9630	9630		28.487	3.813	1	121340			19449	4318	12870	13001	26225	26225					0.060592666659431416
SPVKISEI	8	Unmodified	_SPVKISEI_					0	0	0		ENSG00000168994|ENST00000380283|PXDC1	ENSG00000168994|ENST00000380283|PXDC1	ENSG00000168994|ENST00000380283|PXDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.75848388671875	2	436.758018	871.501483	0.39029	0.00017046	0.90665	0.00039599	1.2969	0.00056645	436.7583608853809	47.623	0.50001	47.703	47.504	48.004	0.080029					33	19	2	0	0	0	0.43379	1	9468	9468		21.747	3.6117	1	124370			19450	4318	12870	13001	26226	26226					0.060592666659431416
SPVPIISEL	9	Unmodified	_SPVPIISEL_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7792053222656	2	477.778951	953.543348	-0.060958	-2.9124E-05	0.27976	0.00013366	0.2188	0.00010454	477.77899364272673	73.965	0.68021	73.965	73.69	74.37	0					61	24	3	0	0	0	0.25979	1	17724	17724		11.64	0	1	1819200	+		19451	8710	12871	13002	26227	26227					0.06471822354478718
SPVPIISEL	9	Unmodified	_SPVPIISEL_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7789001464844	2	477.778951	953.543348	0.12451	5.9488E-05	0.085031	4.0626E-05	0.20954	0.00010011	477.7789132555586	73.916	0.75152	73.965	73.645	74.396	0.048546					68	27	3	0	0	0	0.25979	1	17537	17537		11.64	0	1	973190	+		19452	8710	12871	13002	26228	26228					0.06471822354478718
SPVSDVSYM	9	Oxidation (M)	_SPVSDVSYM(Oxidation (M))_		SPVSDVSYM(1)		SPVSDVSYM(44)	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7181091308594	2	500.718233	999.421912	-0.10081	-5.0476E-05	-0.19223	-9.6251E-05	-0.29303	-0.00014673	500.7180898850277	43.601	0.52354	43.601	43.39	43.913	0					35	19	3	0	0	0	0.047633	1	8408	8408		43.858	31.327	1	107770			19453	2544	12872	13003	26229	26229		162			-0.07782168070343687
SPVWQDQIL	9	Unmodified	_SPVWQDQIL_					0	0	0		ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM;ENSG00000188419|ENST00000357749|CHM	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2852172851562	2	543.284931	1084.55531	0.07145	3.8818E-05	0.25758	0.00013994	0.32903	0.00017876	543.2849557424998	73.305	0.48802	73.305	73.053	73.541	0					29	17	2	0	0	0	0.1646	2	17417	17417;17445		22.658	2.2045	1	338710			19454	5154	12873	13004	26230;26231	26230					0.016414390976706272
SPVWQDQIL	9	Unmodified	_SPVWQDQIL_					0	0	0		ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM;ENSG00000188419|ENST00000357749|CHM	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2841186523438	2	543.284931	1084.55531	0.2499	0.00013577	-0.42955	-0.00023337	-0.17965	-9.7602E-05	543.2845607703122	73.233	0.35814	73.286	73.062	73.42	0.052567					29	13	3	0	0	0	0.15482	1	17225	17225		23.79	12.149	1	331860			19455	5154	12873	13004	26232	26232					0.016414390976706272
SPVYSHDMDPF	11	Unmodified	_SPVYSHDMDPF_					0	0	0			REV__ENSG00000213213|ENST00000338005|CCDC183	REV__ENSG00000213213|ENST00000338005|CCDC183	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.2776489257812	2	647.774071	1293.53359	0.22006	0.00014255	4.32	0.0027984	4.5401	0.0029409	647.7756263740249	69.739	0.51076	69.8	69.554	70.065	0.060562					48	19	3	0	0	0	0.31637	1	16180	16180		16.149	0.90062	1	165210	+		19456	10993	12874	13005	26233	26233					-0.10143733713221081
SPWPGFFTL	9	Unmodified	_SPWPGFFTL_					0	0	0		OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7894897460938	2	526.26601	1050.51747	0.39411	0.00020741	0.11744	6.1807E-05	0.51155	0.00026921	526.2661001169232	96.712	0.37315	96.712	96.515	96.888	0					27	16	2	0	0	0	0.16944	1	24556	24556		30.637	16.73	1	132640			19457	1494	12875	13006	26234	26234					-0.005770270971424907
SPWPGFFTL	9	Unmodified	_SPWPGFFTL_					0	0	0		OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.78955078125	2	526.26601	1050.51747	0.34845	0.00018337	-0.041894	-2.2048E-05	0.30655	0.00016133	526.265902181769	96.658	0.39004	96.698	96.527	96.917	0.039772					29	18	2	0	0	0	0.16944	1	24346	24346		30.637	16.73	1	170260			19458	1494	12875	13006	26235	26235					-0.005770270971424907
SPYFTHPTI	9	Unmodified	_SPYFTHPTI_					0	0	0		nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.766357421875	2	531.766374	1061.5182	0.60941	0.00032406	-0.50212	-0.00026701	0.10729	5.7052E-05	531.7661681811009	64.799	1.9365	64.799	63.972	65.909	0					156	69	4	0	0	0	0.30005	1	15121	15121		6.7232	0.99131	1	943920			19459	398	12876	13007	26236	26236					-0.010102324480840252
SPYSLLEVL	9	Unmodified	_SPYSLLEVL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7841491699219	2	510.784233	1019.55391	0.19997	0.00010214	0.22297	0.00011389	0.42294	0.00021603	510.7842204324535	90.115	0.54219	90.115	89.811	90.353	0					32	22	2	0	0	0	0.14091	1	22518	22518		25.399	0	1	503550			19460	1989	12877	13008	26237	26237					0.04491805008922256
SQALRYPYF	9	Unmodified	_SQALRYPYF_					0	0	0		ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7561645507812	2	572.792924	1143.57129	0.45613	0.00026127	-0.46536	-0.00026655	-0.0092266	-5.2849E-06	572.7926704726871	57.522	0.35004	57.522	57.329	57.679	0					29	12	3	0	0	0	0.079214	1	12606	12606		45.74	27.367	1	165210			19461	1744	12878	13009	26238	26238					0.005251453345408663
SQAPSIGFPF	10	Unmodified	_SQAPSIGFPF_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7808227539062	2	525.766374	1049.5182	0.77733	0.0004087	1.537	0.0008081	2.3143	0.0012168	525.7667936118181	81.207	0.28714	81.207	81.087	81.374	0					13	9	2	0	0	0	0.42335	1	19828	19828		9.3831	0.035688	1	70818	+		19462	8834	12879	13010	26239	26239					-0.004582324480907118
SQASCSPQ	8	Unmodified	_SQASCSPQ_					0	0	0			REV__ENST00000393892.7_1_17:40126102-40126558:+|nuORF	REV__ENST00000393892.7_1_17:40126102-40126558:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1700744628906	2	404.16871	806.322867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.817	1	76.817	76.317	77.317	0								0	0	0	0.38822	1	18491	18491		4.3292	0	1		+		19463	11708	12880	13011	26240	26240					-0.08804146244585809
SQASYRRR	8	Unmodified	_SQASYRRR_					0	0	0			REV__chr6:29724448-30491137|124|31.4|0.58|5.75|+|0|HLA-F,HLA-E|1	REV__chr6:29724448-30491137|124|31.4|0.58|5.75|+|0|HLA-F,HLA-E|1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.276611328125	2	512.275764	1022.53697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.217	1	22.318	21.818	22.818	0.10178								0	0	0	0.38822	1	1964	1964		0.6015	0	1		+		19464	7808	12881	13012	26241	26241					0.02660741966326441
SQDKTDHTL	9	Unmodified	_SQDKTDHTL_					0	0	0			REV__ENST00000494998.1_1_22:35783088-35786015:+|nuORF	REV__ENST00000494998.1_1_22:35783088-35786015:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7510986328125	2	522.751453	1043.48835	-0.12854	-6.7195E-05	-0.58454	-0.00030557	-0.71308	-0.00037276	522.7510837633524	30.764	0.48315	30.764	30.594	31.078	0					55	23	3	0	0	0	0.30005	1	4553	4553		6.7232	0	1	132450	+		19465	8378	12882	13013	26242	26242					-0.03165216184106612
SQDKTDHTL	9	Unmodified	_SQDKTDHTL_					0	0	0			REV__ENST00000494998.1_1_22:35783088-35786015:+|nuORF	REV__ENST00000494998.1_1_22:35783088-35786015:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7509155273438	2	522.751453	1043.48835	-0.15979	-8.3532E-05	-0.43008	-0.00022482	-0.58987	-0.00030835	522.7512050605026	30.722	0.49441	30.797	30.637	31.131	0.075403					59	27	3	0	0	0	0.30757	1	4368	4368		5.7319	0	1	108860	+		19466	8378	12882	13013	26243	26243					-0.03165216184106612
SQEAPEAPL	9	Unmodified	_SQEAPEAPL_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.2319641113281	2	471.232364	940.450176	-0.38978	-0.00018368	-0.061939	-2.9188E-05	-0.45172	-0.00021287	471.2323319085905	43.087	0.83105	43.087	42.764	43.595	0					53	28	3	0	0	0	0.18364	1	8250	8250		20.454	0	1	218630			19467	2847	12883	13014	26244	26244					-0.022431020987710326
SQEAPEAPL	9	Unmodified	_SQEAPEAPL_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2320861816406	2	471.232364	940.450176	-0.36897	-0.00017387	0.11648	5.4889E-05	-0.25249	-0.00011898	471.2323666686225	43.008	0.64545	43.098	42.781	43.426	0.089764					50	23	3	0	0	0	0.18364	1	8106	8106		20.454	0	1	214650			19468	2847	12883	13014	26245	26245					-0.022431020987710326
SQEEEKGAEYV	11	Unmodified	_SQEEEKGAEYV_					0	0	0		nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN	nc|ENSG00000006747|Q9Y6U3-3|SCIN	nc|ENSG00000006747|Q9Y6U3-3|SCIN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.7868041992188	2	634.785689	1267.55683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.71	1	67.71	67.21	68.21	0								0	0	0	0.33564	1	15712	15712		2.2828	0.22302	1				19469	375	12884	13015	26246	26246					-0.0662501639490074
SQEETGMPNKA	11	Unmodified	_SQEETGMPNKA_					0	0	0		ENST00000472173.5_1_X:118112321-118146861:+|nuORF;nc|ENSG00000175556|Q496Y0-3|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3	ENST00000472173.5_1_X:118112321-118146861:+|nuORF	ENST00000472173.5_1_X:118112321-118146861:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7700805664062	2	596.269152	1190.52375	-0.094029	-5.6067E-05	-0.66817	-0.00039841	-0.7622	-0.00045448	596.268644960065	106.3	0.52069	106.3	106.05	106.57	0					118	48	4	0	0	0	0.40693	1	27389	27389		2.7352	0.89096	1	185380			19470	4628	12885	13016	26247	26247					-0.06388921718576057
SQEETGMPNKA	11	Unmodified	_SQEETGMPNKA_					0	0	0		ENST00000472173.5_1_X:118112321-118146861:+|nuORF;nc|ENSG00000175556|Q496Y0-3|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3	ENST00000472173.5_1_X:118112321-118146861:+|nuORF	ENST00000472173.5_1_X:118112321-118146861:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2688598632812	2	596.269152	1190.52375	0.11652	6.9475E-05	-0.86646	-0.00051664	-0.74994	-0.00044717	596.26851305438	106.27	0.601	106.3	106.03	106.63	0.029739					132	68	4	0	0	0	0.41422	1	27196	27196		1.0715	0.46996	1	216150			19471	4628	12885	13016	26248	26248					-0.06388921718576057
SQEETGMPNKA	11	Unmodified	_SQEETGMPNKA_					0	0	0		ENST00000472173.5_1_X:118112321-118146861:+|nuORF;nc|ENSG00000175556|Q496Y0-3|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3	ENST00000472173.5_1_X:118112321-118146861:+|nuORF	ENST00000472173.5_1_X:118112321-118146861:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	596.269152	1190.52375	0.11652	6.9475E-05	-0.86646	-0.00051664	-0.74994	-0.00044717	596.26851305438	106.27	0.601	106.3	106.03	106.63	0.029739	-0.0010618	-0.00012319	NaN	2.7352	132	68	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216150			19472	4628	12885	13016							-0.06388921718576057
SQEIIEMLSK	10	Unmodified	_SQEIIEMLSK_					0	0	0		ZNF473|p.V588Sfs*5|1|0.55|ENSG00000142528|chr19:50046199-50046200|-/G|frameshift_variant;ENSG00000142528|ENST00000270617|ZNF473	ZNF473|p.V588Sfs*5|1|0.55|ENSG00000142528|chr19:50046199-50046200|-/G|frameshift_variant	ZNF473|p.V588Sfs*5|1|0.55|ENSG00000142528|chr19:50046199-50046200|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3125610351562	2	589.310289	1176.60602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.43	1	104.46	103.96	104.96	0.034004								0	0	0	0.33805	1	26699	26699		2.4985	0	1				19473	3108	12886	13017	26249	26249					0.024786003603367135
SQEPNQKY	8	Unmodified	_SQEPNQKY_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.73699951171875	2	497.235439	992.456324	-0.010234	-5.0887E-06	-0.047977	-2.3856E-05	-0.058211	-2.8944E-05	497.2352671318447	30.335	0.61871	30.41	30.211	30.83	0.075403					101	39	4	0	0	0	0.53894	1	4233	4233		2.0598	0.21551	1	192810	+		19474	10623	12887	13018	26250	26250					-0.040205838672363825
SQFINEQF	8	Unmodified	_SQFINEQF_					0	0	0		tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.74090576171875	2	506.740357	1011.46616	0.21498	0.00010894	-0.41314	-0.00020935	-0.19816	-0.00010042	506.7401030483371	50.092	0.40599	50.165	49.979	50.385	0.07312					24	13	2	0	0	0	0.51967	1	10270	10270		10.074	0	1	208470			19475	13499	12888	13019	26251	26251					-0.03911395861860001
SQHPNRRP	8	Unmodified	_SQHPNRRP_					0	0	0		ENST00000406172.6_1_22:19708391-19710534:+|nuORF	ENST00000406172.6_1_22:19708391-19710534:+|nuORF	ENST00000406172.6_1_22:19708391-19710534:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.26190185546875	2	496.262656	990.51076	-0.083775	-4.1574E-05	-1.4273	-0.0007083	-1.511	-0.00074987	496.2619353221426	24.903	0.25356	24.903	24.815	25.069	0					29	18	2	0	0	0	0.53894	1	2818	2818		2.0598	0	1	17144			19476	6379	12889	13020	26252	26252					0.015124727948546024
SQHQTLQSF	9	Unmodified	_SQHQTLQSF_					0	0	0			REV__ENSG00000120784|ENST00000684514|ZFP30	REV__ENSG00000120784|ENST00000684514|ZFP30	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.8002319335938	2	538.261988	1074.50942	0.49243	0.00026506	-3.0862	-0.0016612	-2.5937	-0.0013961	538.2603198283431	75.213	0.52864	75.213	75.032	75.561	0					33	19	2	0	0	0	0.2094	1	17957	17957		17.113	0	1	318890	+		19477	8884	12890	13021	26253	26253					-0.024852060845660162
SQKQRSFV	8	Unmodified	_SQKQRSFV_					0	0	0		nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4;ENSG00000221866|ENST00000321063|PLXNA4	nc|ENSG00000221866|Q9HCM2-2|PLXNA4	nc|ENSG00000221866|Q9HCM2-2|PLXNA4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.26873779296875	2	490.269616	978.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.019	1	79.019	78.519	79.519	0								0	0	0	0.38822	1	19164	19164		7.9102	2.1783	1				19478	5589	12891	13022	26254	26254					0.03455705503279205
SQLFVSLIF	9	Unmodified	_SQLFVSLIF_					0	0	0		chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.302978515625	2	527.302593	1052.59063	0.24476	0.00012906	0.10565	5.5711E-05	0.35041	0.00018477	527.3025631541705	94.563	0.85004	94.601	94.343	95.193	0.038086					84	34	4	0	0	0	0.074645	1	23876	23876		37.974	0	1	1501900			19479	183	12892	13023	26255	26255					0.06644101625465737
SQLHRLRQL	9	Unmodified	_SQLHRLRQL_					0	0	0		nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;ENST00000465299.1_3_6:145157593-145158348:+|nuORF;nc|ENSG00000198947|P11532-9|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD	nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000198947|P11532-3|DMD	nc|ENSG00000198947|P11532-3|DMD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8416137695312	2	575.843813	1149.67307	0.34657	0.00019957	-1.278	-0.00073592	-0.93141	-0.00053635	575.8428036821286	88.716	0.56789	88.716	88.486	89.053	0					52	23	3	0	0	0	0.3354	1	22204	22204		2.0598	0	1	180170			19480	3507;5434	12893	13024	26256	26256					0.10422436476960684
SQLLLSNHVHT	11	Unmodified	_SQLLLSNHVHT_					0	0	0		ENST00000252599.8_2_19:17692309-17692558:+|nuORF	ENST00000252599.8_2_19:17692309-17692558:+|nuORF	ENST00000252599.8_2_19:17692309-17692558:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8244018554688	2	624.838394	1247.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.746	1	62.746	62.246	63.246	0								0	0	0	0.32197	1	14196	14196		7.1017	1.3699	1				19481	5841	12894	13025	26257	26257					0.04830989312017664
SQLPQHPLTP	10	Unmodified	_SQLPQHPLTP_					0	0	0		HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant;HIVEP3|p.E605Dfs*32|1|0.16|ENSG00000127124|chr1:41582983-41582983|C/-|frameshift_variant;HIVEP3|p.P927Lfs*14|1|0.41|ENSG00000127124|chr1:41582018-41582018|G/-|frameshift_variant;HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant	HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.3041381835938	2	559.303655	1116.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.39	1	107.41	106.91	107.91	0.025711								0	0	0	0.33916	1	27511	27511		1.1933	0.50296	1				19482	2356	12895	13026	26258	26258					0.03912530363277256
SQPHCVFWDFS	11	Unmodified	_SQPHCVFWDFS_					0	0	0		ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.5289001464844	3	451.529129	1351.56556	0.57342	0.00025891	-0.87119	-0.00039337	-0.29778	-0.00013445	451.5287221976424	67.516	0.97335	67.581	67.101	68.074	0.065071					49	33	2	0	0	0	0.41486	1	15533	15533		0.92553	0.080592	1	210810			19483	3522	12896	13027	26259	26259					-0.09616321239423087
SQPKYDLI	8	Unmodified	_SQPKYDLI_					0	0	0		ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2608337402344	2	482.260925	962.507297	0.55298	0.00026668	-0.24089	-0.00011617	0.31209	0.00015051	482.26081618698834	80.867	0.3774	80.867	80.646	81.023	0					21	12	2	0	0	0	0.35759	1	19757	19757		13.906	2.7916	1	82813			19484	4609	12897	13028	26260	26260					0.02454365177618456
SQPQLVLRAQK	11	Unmodified	_SQPQLVLRAQK_					0	0	0			REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3779907226562	2	634.377686	1266.74082	0.24972	0.00015842	-0.21347	-0.00013542	0.036249	2.2996E-05	634.3779296688804	109.42	0.14381	109.44	109.37	109.51	0.019402					24	15	2	0	0	0	0.40796	1	27987	27987		2.4985	1.0166	1	376640	+		19485	9307	12898	13029	26261	26261					0.11811841617122809
SQQFELIL	8	Unmodified	_SQQFELIL_					0	0	0			REV__ENSG00000187823|ENST00000695839|RTL4	REV__ENSG00000187823|ENST00000695839|RTL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.26904296875	2	489.26875	976.522947	0.36311	0.00017766	-0.12878	-6.3009E-05	0.23433	0.00011465	489.2685736641891	83.186	0.70754	83.186	82.9	83.608	0					47	23	4	0	0	0	0.41706	1	20474	20474		24.021	2.4836	1	318910	+		19486	10748	12899	13030	26262	26262					0.03374651694673503
SQQFELIL	8	Unmodified	_SQQFELIL_					0	0	0			REV__ENSG00000187823|ENST00000695839|RTL4	REV__ENSG00000187823|ENST00000695839|RTL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.26885986328125	2	489.26875	976.522947	0.18987	9.2897E-05	0.12078	5.9092E-05	0.31064	0.00015199	489.2687022161957	83.222	0.67564	83.244	82.851	83.527	0.021744					48	23	3	0	0	0	0.41706	1	20293	20293		24.021	2.4836	1	235810	+		19487	10748	12899	13030	26263	26263					0.03374651694673503
SQQLRRRPL	9	Unmodified	_SQQLRRRPL_					0	0	0			REV__ENST00000485230.5_2_3:112930474-112968600:+|nuORF	REV__ENST00000485230.5_2_3:112930474-112968600:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.348876953125	2	577.349263	1152.68397	0.47609	0.00027487	-1.015	-0.00058598	-0.53887	-0.00031112	577.3486628640163	102.27	0.43843	102.31	102.14	102.58	0.040909					53	30	3	0	0	0	0.33704	1	26045	26045		1.8442	0	1	133640	+		19488	12117	12900	13031	26264	26264					0.11373838851272922
SQQLRRRPL	9	Unmodified	_SQQLRRRPL_					0	0	0			REV__ENST00000485230.5_2_3:112930474-112968600:+|nuORF	REV__ENST00000485230.5_2_3:112930474-112968600:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3486938476562	2	577.349263	1152.68397	0.42534	0.00024557	-1.2109	-0.00069909	-0.78553	-0.00045353	577.3484840122604	103.88	0.20271	103.92	103.83	104.04	0.03791					45	21	3	0	0	0	0.25875	1	26541	26541		1.8442	0	1	353760	+		19489	12117	12900	13031	26265	26265					0.11373838851272922
SQQLRRRPL	9	Unmodified	_SQQLRRRPL_					0	0	0			REV__ENST00000485230.5_2_3:112930474-112968600:+|nuORF	REV__ENST00000485230.5_2_3:112930474-112968600:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	577.349263	1152.68397	0.18973	0.00010954	-0.81902	-0.00047286	-0.6293	-0.00036332	577.3486131962588	104.02	0.62069	104.02	103.71	104.33	0	0.052227	0.00013386	NaN	1.8442	141	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190140	+		19490	12117	12900	13031							0.11373838851272922
SQREIEEFL	9	Unmodified	_SQREIEEFL_					0	0	0		BCL2L11-MERTK|1|fusion;BCL2L11-MERTK|3|fusion;BCL2L11-MERTK|2|fusion;MERTK|p.E960Rfs*39|1|0.13|ENSG00000153208|chr2:112028738-112028738|G/-|frameshift_variant;ENSG00000153208|ENST00000295408|MERTK	BCL2L11-MERTK|1|fusion	BCL2L11-MERTK|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7920532226562	2	575.790578	1149.5666	0.28545	0.00016436	2.6262	0.0015121	2.9116	0.0016765	575.7919300639373	83.259	1.4472	83.281	82.563	84.01	0.021744					63	50	2	0	0	0	0.2094	1	20319	20319		22.736	2.2827	1	196610			19491	86	12901	13032	26266	26266					-0.002197835988681618
SQRNICCI	8	Unmodified	_SQRNICCI_					0	0	0			REV__NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	REV__NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.7231750488281	2	468.723129	935.431706	-0.0034525	-1.6183E-06	0.84258	0.00039494	0.83913	0.00039332	468.7234804190364	86.638	0.46921	86.666	86.39	86.859	0.027573					32	21	2	0	0	0	0.54081	1	21362	21362		0.79363	0	1	297860	+		19492	9496	12902	13033	26267	26267					-0.03859258545969624
SQSPHNPLL	9	Unmodified	_SQSPHNPLL_					0	0	0			REV__ENST00000482847.5_1_9:116154440-116155869:-|nuORF	REV__ENST00000482847.5_1_9:116154440-116155869:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7613220214844	2	496.761623	991.508694	0.23596	0.00011722	-0.11689	-5.8066E-05	0.11908	5.9152E-05	496.7614843426629	35.462	0.46882	35.541	35.322	35.791	0.078827					43	17	3	0	0	0	0.19398	1	5798	5798		19.257	1.122	1	174380	+		19493	12108	12903	13034	26268	26268					0.012599992663695048
SQTQKAKFS	9	Unmodified	_SQTQKAKFS_					0	0	0		ENSG00000111404|ENST00000538724|RERGL;nc|ENSG00000111404|Q9H628|RERGL	ENSG00000111404|ENST00000538724|RERGL	ENSG00000111404|ENST00000538724|RERGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7742309570312	2	512.774731	1023.53491	-0.57708	-0.00029591	-0.37064	-0.00019005	-0.94772	-0.00048597	512.7744881967337	41.746	0.44734	41.746	41.52	41.968	0					39	16	3	0	0	0	0.20162	1	7819	7819		18.373	3.9677	1	171810			19494	1704	12904	13035	26269	26269					0.02408268437852712
SQTQKAKFS	9	Unmodified	_SQTQKAKFS_					0	0	0		ENSG00000111404|ENST00000538724|RERGL;nc|ENSG00000111404|Q9H628|RERGL	ENSG00000111404|ENST00000538724|RERGL	ENSG00000111404|ENST00000538724|RERGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7744140625	2	512.774731	1023.53491	-0.39039	-0.00020018	-0.18514	-9.4936E-05	-0.57553	-0.00029512	512.7745231791502	41.691	0.38533	41.781	41.556	41.941	0.089764					33	15	3	0	0	0	0.24273	1	7656	7656		13.615	3.4643	1	168600			19495	1704	12904	13035	26270	26270					0.02408268437852712
SRARRRRRAW	10	Unmodified	_SRARRRRRAW_					0	0	0			REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN	REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.6080627441406	3	457.60821	1369.8028	0.23022	0.00010535	0.14797	6.7711E-05	0.37819	0.00017306	457.60826892319983	94.226	2.1515	94.265	93.255	95.407	0.038086					178	93	3	0	0	0	0.47446	1	23967	23967		0.15932	0	1	691320	+		19496	8534	12905	13036	26271	26271					0.13269050599501497
SRDCCAGDEV	10	Unmodified	_SRDCCAGDEV_					0	0	0			REV__ENST00000355476.7_2_4:26322496-26364082:+|nuORF	REV__ENST00000355476.7_2_4:26322496-26364082:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7007446289062	2	527.700048	1053.38554	-0.16092	-8.4916E-05	1.1913	0.00062865	1.0304	0.00054373	527.7005477340465	27.616	0.50641	27.616	27.534	28.041	0					76	36	3	0	0	0	0.31773	1	3626	3626		4.897	1.3005	1	72885	+		19497	11496	12906	13037	26272	26272					-0.1390136823872581
SRDDIRSLCD	10	Unmodified	_SRDDIRSLCD_					0	0	0		nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;ENSG00000160505|ENST00000301295|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.276611328125	2	590.274769	1178.53499	-0.15864	-9.3642E-05	0.50633	0.00029887	0.34769	0.00020523	590.2750759765529	22.737	0.2991	22.737	22.612	22.911	0					31	27	2	0	0	0	0.47318	1	2220	2220		0.40072	0	1	11259			19498	3762	12907	13038	26273	26273					-0.04714099624447954
SRDEFIFYS	9	Unmodified	_SRDEFIFYS_					0	0	0		ENST00000358711.7_1_20:62571331-62572425:-|nuORF;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1	ENST00000358711.7_1_20:62571331-62572425:-|nuORF	ENST00000358711.7_1_20:62571331-62572425:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2740478515625	2	582.272021	1162.52949	0.38551	0.00022447	0.78722	0.00045838	1.1727	0.00068285	582.2728875150941	102.77	0.60096	102.77	102.63	103.23	0					82	40	3	0	0	0	0.33849	1	26414	26414		1.6526	0.17072	1	106610			19499	5358	12908	13039	26274	26274					-0.045274551446027544
SRDEFIFYS	9	Unmodified	_SRDEFIFYS_					0	0	0		ENST00000358711.7_1_20:62571331-62572425:-|nuORF;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1	ENST00000358711.7_1_20:62571331-62572425:-|nuORF	ENST00000358711.7_1_20:62571331-62572425:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2728881835938	2	582.272021	1162.52949	0.65054	0.00037879	0.47768	0.00027814	1.1282	0.00065693	582.2728241919114	102.86	0.64209	102.9	102.63	103.27	0.040909					110	55	3	0	0	0	0.33849	1	26261	26261		1.6526	0	1	90999			19500	5358	12908	13039	26275	26275					-0.045274551446027544
SRDFGLLVF	9	Unmodified	_SRDFGLLVF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2740478515625	2	527.290017	1052.56548	0.081696	4.3077E-05	0.28932	0.00015256	0.37102	0.00019563	527.2902415565884	72.705	0.63539	72.761	72.461	73.097	0.055939					40	21	3	0	0	0	0.29105	1	17081	17081		7.9102	0	1	321200			19501	5692	12909	13040	26276	26276					0.041300468229110265
SRDQEKPYF	9	Unmodified	_SRDQEKPYF_					0	0	0		ENST00000497500.1_7:23221671-23226770:+|nuORF;ENST00000487595.1_7:23221671-23236000:+|nuORF;nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	ENST00000497500.1_7:23221671-23226770:+|nuORF	ENST00000497500.1_7:23221671-23226770:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2830810546875	2	585.28292	1168.55129	0.49931	0.00029224	-0.44737	-0.00026184	0.051943	3.0401E-05	585.2827251241589	19.002	0.41788	19.092	18.86	19.278	0.089705					86	48	2	0	0	0	0.34754	1	1203	1203		0.45834	0	1	31220			19502	2781	12910	13041	26277	26277					-0.026246503960464906
SRDRLLARRPN	11	Unmodified	_SRDRLLARRPN_					0	0	0			REV__ENST00000523834.1_1_8:38645888-38646230:+|nuORF	REV__ENST00000523834.1_1_8:38645888-38646230:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.93267822265625	3	451.932248	1352.77491	0.56311	0.00025449	0.44805	0.00020249	1.0112	0.00045698	451.9323735718666	91.662	0.68932	91.662	91.269	91.958	0					64	25	3	0	0	0	0.4167	1	22934	22934		0.50596	0	1	269100	+		19503	12311	12911	13042	26278	26278					0.11263682828735
SRDYNPYNYS	10	Unmodified	_SRDYNPYNYS_					0	0	0		nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122|CLASP2	nc|ENSG00000163539|O75122|CLASP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.7745971679688	2	639.772916	1277.53128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.728	1	94.728	94.228	95.228	0								0	0	0	0.33869	1	23942	23942		1.4819	0	1				19504	3917	12912	13043	26279	26279					-0.09638446126655253
SREGCSSLPEI	11	Unmodified	_SREGCSSLPEI_					0	0	0		nc|ENSG00000100503|Q8N4C6-6|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2796630859375	2	589.27952	1176.54449	0.023382	1.3779E-05	0.26307	0.00015502	0.28645	0.0001688	589.2797416653572	32.329	0.64132	32.329	32.215	32.856	0					44	29	2	0	0	0	0.40891	1	5042	5042		2.2828	0.63015	1	26334			19505	7468	12913	13044	26280	26280					-0.036723313389074974
SREGCSSLPEI	11	Unmodified	_SREGCSSLPEI_					0	0	0		nc|ENSG00000100503|Q8N4C6-6|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2792358398438	2	589.27952	1176.54449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.542	1	32.616	32.116	33.116	0.07378								0	0	0	0.33503	1	4931	4931		2.4985	0.65425	1				19506	7468	12913	13044	26281	26281					-0.036723313389074974
SRGNLMLLN	9	Unmodified	_SRGNLMLLN_					0	0	0			REV__nc|ENSG00000137449|Q7Z5Q1-5|CPEB2	REV__nc|ENSG00000137449|Q7Z5Q1-5|CPEB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.77630615234375	2	509.279126	1016.5437	0.55396	0.00028212	-2.1407	-0.0010902	-1.5867	-0.00080807	509.7789973778878	92.723	0.60056	92.759	92.402	93.002	0.036522					52	21	4	0	0	0	0.2418	1	23202	23202		13.906	4.5586	1	277090	+		19507	12799	12914	13045	26282	26282					0.03608918802694916
SRGSRYREF	9	Unmodified	_SRGSRYREF_					0	0	0			REV__nc|ENSG00000175662|Q6ZVM7-4|TOM1L2	REV__nc|ENSG00000175662|Q6ZVM7-4|TOM1L2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.29296875	2	579.294153	1156.57375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.622	1	42.711	42.211	43.211	0.089764								0	0	0	0.29303	1	7957	7957		0.45834	0	1		+		19508	10385	12915	13046	26283	26283					0.0017299379221640265
SRHHRILF	8	Unmodified	_SRHHRILF_					0	0	0		ENST00000520572.1_1_8:143787902-143788028:-|nuORF	ENST00000520572.1_1_8:143787902-143788028:-|nuORF	ENST00000520572.1_1_8:143787902-143788028:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3067016601562	2	533.306867	1064.59918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.34	1	101.34	100.84	101.84	0								0	0	0	0.38822	1	25955	25955		2.8892	0	1				19509	6953	12916	13047	26284	26284					0.06946513105299346
SRIDKGLIYA	10	Unmodified	_SRIDKGLIYA_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3264770507812	2	568.327131	1134.63971	-0.13025	-7.4023E-05	0.19995	0.00011364	0.069702	3.9614E-05	568.3270906231315	29.973	0.50382	30.048	29.882	30.386	0.075403					74	31	3	0	0	0	0.4753	1	4250	4250		0	0	1	61428	+		19510	10018	12917	13048	26285	26285					0.07777389914463129
SRIQPCLLHH	10	Unmodified	_SRIQPCLLHH_					0	0	0			REV__ENST00000472800.1_1_2:74756265-74756756:-|nuORF	REV__ENST00000472800.1_1_2:74756265-74756756:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3115234375	2	602.324399	1202.63425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.58	1	48.66	48.16	49.16	0.080029								0	0	0	0.33861	1	9752	9752		1.8442	0	1		+		19511	12037	12918	13049	26286	26286					0.04103387850955187
SRIRKNMEYFF	11	Unmodified	_SRIRKNMEYFF_					0	0	0		tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.5899658203125	3	497.590611	1489.75	0.25805	0.0001284	-2.0461	-0.0010181	-1.7881	-0.00088974	497.589260945293	59.574	0.87556	59.646	59.457	60.332	0.072338					61	33	3	0	0	0	0.37201	1	13086	13086		9.7643	1.0125	1	305540			19512	13622	12919	13050	26287	26287					0.024718669111507552
SRKDQLNP	8	Unmodified	_SRKDQLNP_					0	0	0			REV__nc|ENSG00000154556|O94875-11|SORBS2	REV__nc|ENSG00000154556|O94875-11|SORBS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2587585449219	2	479.259248	956.503943	-0.51406	-0.00024637	-0.060686	-2.9084E-05	-0.57475	-0.00027545	479.25914221106905	22.939	0.77434	22.939	22.715	23.49	0					138	73	3	0	0	0	0.53557	1	2339	2339		4.3292	0	1	115830	+		19513	9715	12920	13051	26288	26288					0.023951151236133228
SRKRWAHG	8	Unmodified	_SRKRWAHG_					0	0	0			REV__nc|ENSG00000106070|Q13322-3|GRB10	REV__nc|ENSG00000106070|Q13322-3|GRB10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.25885009765625	2	499.275567	996.53658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.856	1	53.856	53.356	54.356	0								0	0	0	0.38822	1	11487	11487		5.7604	0	1		+		19514	8566	12921	13052	26289	26289					0.038173670371293156
SRLATTHQIE	10	Unmodified	_SRLATTHQIE_					0	0	0			REV__ENSG00000141569|ENST00000269383|TRIM65	REV__ENSG00000141569|ENST00000269383|TRIM65	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2916259765625	2	578.309469	1154.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.182	1	93.219	92.719	93.719	0.037369								0	0	0	0.32902	1	23312	23312		13.042	1.4022	1		+		19515	9410	12922	13053	26290	26290					0.03326727386638595
SRLIVHTIVF	10	Unmodified	_SRLIVHTIVF_					0	0	0			REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3639526367188	2	592.861141	1183.70773	-0.044297	-2.6262E-05	1.2958	0.00076822	1.2515	0.00074196	593.3643463785048	109.56	0.15388	109.56	109.46	109.61	0					22	11	3	0	0	0	0.44727	1	28204	28204		5.2969	1.7004	1	545670	+		19516	10369	12923	13054	26291	26291					0.1232225956507591
SRLIVHTIVF	10	Unmodified	_SRLIVHTIVF_					0	0	0			REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	592.861141	1183.70773	-0.044297	-2.6262E-05	1.2958	0.00076822	1.2515	0.00074196	593.3643463785048	109.56	0.15388	109.56	109.46	109.61	0	-0.034476	-0.0006951	NaN	5.2969	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545670	+		19517	10369	12923	13054							0.1232225956507591
SRLIVHTIVF	10	Unmodified	_SRLIVHTIVF_					0	0	0			REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	592.861141	1183.70773	0.27282	0.00016174	2.5635	0.0015198	2.8363	0.0016816	593.3646440714477	109.61	0.17696	109.63	109.48	109.65	0.017242	0.034476	0.00080807	NaN	5.2969	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1220800	+		19518	10369	12923	13054							0.1232225956507591
SRPAPRYDL	9	Unmodified	_SRPAPRYDL_					0	0	0			REV__ENST00000306688.7_1_17:79981178-79981643:+|nuORF	REV__ENST00000306688.7_1_17:79981178-79981643:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.29736328125	2	537.788173	1073.56179	0.29318	0.00015767	0.26776	0.000144	0.56094	0.00030166	537.7883559071897	90.181	0.27502	90.181	90.138	90.413	0					17	11	2	0	0	0	0.22912	1	22579	22579		18.146	1.0335	1	137380	+		19519	11360	12924	13055	26292	26292					0.027953770490285024
SRPGRLLD	8	Unmodified	_SRPGRLLD_					0	0	0		nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-2|NLRC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2644958496094	2	457.264333	912.514114	0.42513	0.0001944	-0.23383	-0.00010692	0.1913	8.7474E-05	457.26416748656123	79.052	0.69304	79.052	78.705	79.398	0					36	23	2	0	0	0	0.53817	1	19199	19199		2.5775	0	1	103140			19520	7554	12925	13056	26293	26293					0.054357228488470355
SRPPLLRPLS	10	Unmodified	_SRPPLLRPLS_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K;ENST00000563555.1_1_16:22268974-22274610:+|nuORF	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3535766601562	2	568.35094	1134.68733	-0.10164	-5.7769E-05	4.2087	0.002392	4.1071	0.0023343	568.3533381002501	109.52	0.093216	109.52	109.5	109.59	0					8	5	2	0	0	0	0.45945	1	28189	28189		2.9952	1.3426	1	312910			19521	1363	12926	13057	26294	26294					0.1253708890528742
SRPRHPHH	8	Unmodified	_SRPRHPHH_					0	0	0		nc|ENSG00000135426|A2RU30-2|TESPA1;nc|ENSG00000135426|A2RU30-3|TESPA1;ENSG00000135426|ENST00000449076|TESPA1	nc|ENSG00000135426|A2RU30-2|TESPA1	nc|ENSG00000135426|A2RU30-2|TESPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.271484375	2	512.270816	1022.52708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.939	1	13.939	13.439	14.439	0								0	0	0	0.38822	1	293	293		0	0	1				19522	2729	12927	13058	26295	26295					0.016715987516022324
SRPRHPHH	8	Unmodified	_SRPRHPHH_					0	0	0		nc|ENSG00000135426|A2RU30-2|TESPA1;nc|ENSG00000135426|A2RU30-3|TESPA1;ENSG00000135426|ENST00000449076|TESPA1	nc|ENSG00000135426|A2RU30-2|TESPA1	nc|ENSG00000135426|A2RU30-2|TESPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2711181640625	2	512.270816	1022.52708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.738	1	18.738	18.238	19.238	0								0	0	0	0.38822	1	1192	1192		0	0	1				19523	2729	12927	13058	26296	26296					0.016715987516022324
SRPVPENWFSF	11	Unmodified	_SRPVPENWFSF_					0	0	0			REV__nc|ENSG00000146729|O75323-2|NIPSNAP2	REV__nc|ENSG00000146729|O75323-2|NIPSNAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.89178466796875	3	455.891055	1364.65134	-0.071841	-3.2751E-05	2.1392	0.00097524	2.0674	0.00094249	456.2264543521218	44.507	0.81782	44.594	44.363	45.181	0.08754					45	29	2	0	0	0	0.38987	1	8583	8583		6.6235	0.84002	1	83866	+		19524	9548	12928	13059	26297	26297					-0.016404130622504454
SRPVPENWFSF	11	Unmodified	_SRPVPENWFSF_					0	0	0			REV__nc|ENSG00000146729|O75323-2|NIPSNAP2	REV__nc|ENSG00000146729|O75323-2|NIPSNAP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	455.891055	1364.65134	-0.065265	-2.9754E-05	1.5041	0.00068569	1.4388	0.00065594	456.226174459711	44.555	0.90759	44.555	44.269	45.177	0	-0.019587	-0.00034538	NaN	6.6235	52	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91995	+		19525	9548	12928	13059							-0.016404130622504454
SRQAFESM	8	Unmodified	_SRQAFESM_					0	0	0		ENST00000498649.1_1_22:21350102-21351129:+|nuORF;ENST00000463909.1_1_22:21349904-21350666:+|nuORF;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000498649.1_1_22:21350102-21351129:+|nuORF	ENST00000498649.1_1_22:21350102-21351129:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2182922363281	2	478.218734	954.422915	-0.38774	-0.00018542	0.17601	8.4169E-05	-0.21173	-0.00010126	478.2187344246899	28.661	0.62284	28.739	28.546	29.169	0.078287					92	40	3	0	0	0	0.53858	1	3866	3866		2.3027	0	1	341600			19526	1141	12929	13060	26298	26298					-0.05611908910782404
SRQPEEEL	8	Unmodified	_SRQPEEEL_					0	0	0			REV__ENST00000263511.8_1_1:16812982-16817701:-|nuORF	REV__ENST00000263511.8_1_1:16812982-16817701:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.763916015625	2	494.240721	986.466889	0.17526	8.6622E-05	0.33668	0.0001664	0.51194	0.00025302	494.24083186078565	34.666	0.4038	34.666	34.45	34.854	0					38	15	3	0	0	0	0.3576	1	5741	5741		6.7232	0	1	34304	+		19527	11243	12930	13061	26299	26299					-0.026886012128102266
SRQRKRRRKR	10	Unmodified	_SRQRKRRRKR_					0	0	0		ENST00000319296.9_1_16:30419378-30419444:+|nuORF	ENST00000319296.9_1_16:30419378-30419444:+|nuORF	ENST00000319296.9_1_16:30419378-30419444:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.306640625	3	476.306531	1425.89776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.92	1	115.92	115.42	116.42	0								0	0	0	0.34005	1	29536	29536		0.15932	0	1				19528	6027	12931	13062	26300	26300					0.20184984070669998
SRQRQRRRWL	10	Unmodified	_SRQRQRRRWL_					0	0	0			REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF	REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2836608886719	3	481.283503	1440.82868	0.18008	8.6667E-05	0.089825	4.3231E-05	0.2699	0.0001299	481.2834637670582	96.865	2.1896	96.865	95.948	98.137	0					220	108	4	0	0	0	0.47119	1	24800	24800		0.77653	0.77653	1	954950	+		19529	11245	12932	13063	26301	26301					0.1258990005112537
SRRANLII	8	Unmodified	_SRRANLII_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.79547119140625	2	471.795801	941.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.943	1	78.974	78.474	79.474	0.030159								0	0	0	0.38822	1	18981	18981		2.8892	0	1				19530	2441	12933	13064	26302	26302					0.10392288636899139
SRRREASP	8	Unmodified	_SRRREASP_					0	0	0		ENST00000397147.6_1_22:37257112-37260979:+|nuORF	ENST00000397147.6_1_22:37257112-37260979:+|nuORF	ENST00000397147.6_1_22:37257112-37260979:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7696838378906	2	479.762489	957.510425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.616	1	27.616	27.116	28.116	0								0	0	0	0.38719	1	3599	3599		15.847	0	1				19531	6348	12934	13065	26303	26303					0.02997053075000622
SRRRKKRFRQE	11	Unmodified	_SRRRKKRFRQE_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.30908203125	3	516.309829	1545.90766	0.59905	0.0003093	-0.36612	-0.00018903	0.23293	0.00012026	516.3095187456305	97.597	0.89308	97.638	97.112	98.005	0.040855					80	43	3	0	0	0	0.4185	1	24690	24690		0.094841	0.094841	1	93944	+		19532	10715	12935	13066	26304	26304					0.15654127285415598
SRRRLHRI	8	Unmodified	_SRRRLHRI_					0	0	0		ENSG00000122304|ENST00000241808|PRM2;nc|ENSG00000122304|P04554-2|PRM2	ENSG00000122304|ENST00000241808|PRM2	ENSG00000122304|ENST00000241808|PRM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3323974609375	2	547.344315	1092.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.94	1	114.95	114.45	115.45	0.013092								0	0	0	0.38822	1	29228	29228		0.69038	0	1				19533	2178	12936	13067	26305	26305					0.13144695636560755
SRSESSGGTSE	11	Unmodified	_SRSESSGGTSE_					0	0	0			REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF	REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7323608398438	2	542.231081	1082.44761	-0.14701	-7.9711E-05	0.083184	4.5105E-05	-0.063822	-3.4607E-05	542.7310168100232	26.358	0.51019	26.358	26.152	26.662	0					63	39	2	0	0	0	0.31102	1	3182	3182		0	0	1	18402	+		19534	9297	12937	13068	26306	26306					-0.09031602294339791
SRSETRDVY	9	Unmodified	_SRSETRDVY_					0	0	0			REV__nc|ENSG00000105281|Q15758-3|SLC1A5	REV__nc|ENSG00000105281|Q15758-3|SLC1A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.770263671875	2	556.770177	1111.5258	0.38125	0.00021227	-0.46786	-0.00026049	-0.086604	-4.8219E-05	556.7698778656683	19.116	0.44426	19.205	19.036	19.48	0.089705					113	49	3	0	0	0	0.34646	1	1166	1166		0.6015	0.6015	1	99287	+		19535	8533	12938	13069	26307	26307					-0.02550124918457186
SRSGKKSPK	9	Unmodified	_SRSGKKSPK_					0	0	0			REV__ENST00000467136.5_1_X:30854677-30861194:-|nuORF	REV__ENST00000467136.5_1_X:30854677-30861194:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7906799316406	2	487.790715	973.566878	0.2262	0.00011034	0.094244	4.5971E-05	0.32045	0.00015631	487.7907044487439	78.774	2.9857	78.804	78.021	81.007	0.030159					180	105	4	0	0	0	0.32375	1	18791	18791		3.5965	0.31518	1	1403600	+		19536	12006	12939	13070	26308	26308					0.07903680911658739
SRSLRSTVL	9	Unmodified	_SRSLRSTVL_					0	0	0		nc|ENSG00000078699|O43439-3|CBFA2T2	nc|ENSG00000078699|O43439-3|CBFA2T2	nc|ENSG00000078699|O43439-3|CBFA2T2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8040466308594	2	509.803823	1017.59309	0.75821	0.00038654	-0.2462	-0.00012552	0.512	0.00026102	509.803620416363	80.911	3.0319	80.911	79.958	82.99	0					316	105	4	0	0	0	0.3182	1	19780	19780		4.3292	4.3292	1	1350800			19537	7462	12940	13071	26309	26309					0.08499950083125896
SRSVAKIYL	9	Unmodified	_SRSVAKIYL_					0	0	0		ENST00000531690.5_1_6:1717847-1960173:-|nuORF;nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	ENST00000531690.5_1_6:1717847-1960173:-|nuORF	ENST00000531690.5_1_6:1717847-1960173:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7896118164062	2	518.811116	1035.60768	0.29253	0.00015177	-0.98516	-0.00051111	-0.69262	-0.00035934	518.8104480483012	95.426	1.0541	95.426	94.974	96.028	0					63	50	3	0	0	0	0.25281	1	24019	24019		3.5965	1.5367	1	474460			19538	1772	12941	13072	26310	26310					0.09130022231261137
SRTKRWMRN	9	Unmodified	_SRTKRWMRN_					0	0	0			REV__ENSG00000158516|ENST00000222481|CPA2	REV__ENSG00000158516|ENST00000222481|CPA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.8330078125	2	617.832923	1233.65129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.452	1	37.452	36.952	37.952	0								0	0	0	0.2927	1	6525	6525		0.52476	0.066424	1		+		19539	8325	12942	13073	26311	26311					0.04381308456777333
SRTKTSKLV	9	Unmodified	_SRTKTSKLV_					0	0	0		ENSG00000197444|ENST00000374103|OGDHL;ENST00000471460.1_1_10:50964809-50966620:-|nuORF	ENSG00000197444|ENST00000374103|OGDHL	ENSG00000197444|ENST00000374103|OGDHL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.81341552734375	2	510.314023	1018.61349	0.31451	0.0001605	0.69406	0.00035419	1.0086	0.00051469	510.31426359491763	101.59	0.073036	101.59	101.55	101.63	0					5	4	2	0	0	0	0.25875	1	26034	26034		1.8442	1.0506	1	38960			19540	5298	12943	13074	26312	26312					0.10493120742944484
SRVLRYHFSF	10	Unmodified	_SRVLRYHFSF_					0	0	0		ENST00000476203.2_1_1:78269082-78324778:+|nuORF;nc|ENSG00000180488|Q8NAN2-2|MIGA1	ENST00000476203.2_1_1:78269082-78324778:+|nuORF	ENST00000476203.2_1_1:78269082-78324778:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.9030456542969	3	437.903406	1310.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.135	1	46.135	45.635	46.635	0								0	0	0	0.33952	1	9146	9146		0.77653	0	1				19541	6714	12944	13075	26313	26313					0.04547303274148362
SRWFILLFL	9	Unmodified	_SRWFILLFL_					0	0	0			REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF	REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8560791015625	2	597.855327	1193.6961	0.52715	0.00031516	1.1165	0.00066749	1.6436	0.00098265	597.8557831169587	85.344	0.73751	85.367	84.983	85.72	0.023132					76	29	3	0	0	0	0.33704	1	21037	21037		1.8442	0	1	499010	+		19542	11636	12945	13076	26314	26314					0.10700062541741318
SRWFILLFL	9	Unmodified	_SRWFILLFL_					0	0	0			REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF	REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	597.855327	1193.6961	0.51828	0.00030986	1.0405	0.00062207	1.5588	0.00093192	597.8558707749543	85.336	0.44011	85.336	85.042	85.482	0	-0.015351	-5.659E-05	NaN	1.8442	30	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437640	+		19543	11636	12945	13076							0.10700062541741318
SRWPAMKFR	9	Unmodified	_SRWPAMKFR_					0	0	0		ENST00000377238.2_1_10:20332341-20568745:+|nuORF;ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-3|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2	ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENST00000377238.2_1_10:20332341-20568745:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8175659179688	2	589.81621	1177.61787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.05	1	115.05	114.55	115.55	0								0	0	0	0.28631	1	29358	29358		1.8442	0	1				19544	2127	12946	13077	26315	26315					0.036163066848530434
SRYYQPYE	8	Unmodified	_SRYYQPYE_					0	0	0		ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2508544921875	2	553.251089	1104.48762	-0.18771	-0.00010385	-0.4898	-0.00027098	-0.67751	-0.00037483	553.2507984741975	20.122	0.66396	20.122	19.958	20.622	0					140	66	3	0	0	0	0.5411	1	1490	1490		0.6015	0	1	134560			19545	4843	12947	13078	26316	26316					-0.06044010833147695
SSAAIFVH	8	Unmodified	_SSAAIFVH_					0	0	0		ENSG00000119927|ENST00000348367|GPAM;ENST00000369425.5_1_10:113915595-113915829:-|nuORF	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.22821044921875	2	416.221603	830.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.694	1	39.694	39.194	40.194	0								0	0	0	0.38822	1	7201	7201		0.79363	0	1				19546	2100	12948	13079	26317	26317					0.006655576631828808
SSADPSGAFR	10	Unmodified	_SSADPSGAFR_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.73291015625	2	497.733063	993.451573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.874	1	30.947	30.447	31.447	0.073782								0	0	0	0.33411	1	4433	4433		7.1017	1.3699	1				19547	5252	12949	13080	26318	26318					-0.04541468009995242
SSAEVIAQAR	10	Unmodified	_SSAEVIAQAR_					0	0	0		ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	ENST00000521983.1_1_8:26484742-26500445:+|nuORF	ENST00000521983.1_1_8:26484742-26500445:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2774658203125	2	516.277638	1030.54072	-0.072878	-3.7625E-05	0.29256	0.00015104	0.21968	0.00011342	516.2776773640978	29.91	0.55055	29.91	29.736	30.286	0					51	23	4	0	0	0	0.11267	2	4253	4253;4288		43.772	14.825	1	95382			19548	1082	12950	13081	26319;26320	26319					0.026673669495039576
SSAEVIAQAR	10	Unmodified	_SSAEVIAQAR_					0	0	0		ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	ENST00000521983.1_1_8:26484742-26500445:+|nuORF	ENST00000521983.1_1_8:26484742-26500445:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.277587890625	2	516.277638	1030.54072	-0.062961	-3.2505E-05	0.32669	0.00016866	0.26373	0.00013616	516.2777097674574	29.848	0.54891	29.923	29.746	30.295	0.075403					67	34	3	0	0	0	0.095597	2	4116	4116;4160		45.74	15.899	1	79650			19549	1082	12950	13081	26321;26322	26321					0.026673669495039576
SSAGAPLLHLL	11	Unmodified	_SSAGAPLLHLL_					0	0	0		ENST00000526621.5_3_11:57193529-57194929:-|nuORF	ENST00000526621.5_3_11:57193529-57194929:-|nuORF	ENST00000526621.5_3_11:57193529-57194929:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.818115234375	2	539.816399	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.012	1	96.052	95.552	96.552	0.039772								0	0	0	0.23525	1	24176	24176		22.736	0	1				19550	6996	12951	13082	26323	26323					0.08254004885725408
SSAPVVVTR	9	Unmodified	_SSAPVVVTR_					0	0	0		nc|ENSG00000164916|P85037-2|FOXK1;ENSG00000164916|ENST00000328914|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.2664794921875	2	458.266542	914.51853	-0.017077	-7.8257E-06	0.070459	3.2289E-05	0.053383	2.4463E-05	458.26646521310823	30.136	0.55663	30.136	29.958	30.515	0					66	27	3	0	0	0	0.078774	2	4360	4318;4360		37.075	19.962	1	191720			19551	4039	12952	13083	26324;26325	26325					0.05785187271771974
SSAPVVVTR	9	Unmodified	_SSAPVVVTR_					0	0	0		nc|ENSG00000164916|P85037-2|FOXK1;ENSG00000164916|ENST00000328914|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.2664489746094	2	458.266542	914.51853	-0.19908	-9.1231E-05	0.31781	0.00014564	0.11873	5.4409E-05	458.2665900936033	30.089	0.51397	30.165	29.972	30.486	0.075403					82	31	3	0	0	0	0.11816	2	4214	4174;4214		28.495	14.588	1	171690			19552	4039	12952	13083	26326;26327	26327					0.05785187271771974
SSASSVTVTR	10	Unmodified	_SSASSVTVTR_					0	0	0		nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF	nc|ENSG00000160789|P02545-5|LMNA	nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7618103027344	2	497.76182	993.509088	-0.15526	-7.728E-05	0.24203	0.00012047	0.086775	4.3193E-05	497.7619985547095	23.501	0.31453	23.501	23.366	23.681	0					66	30	3	0	0	0	0.25774	1	2438	2438		27.088	17.544	1	40852			19553	3778	12953	13084	26328	26328					0.012073741955987316
SSASSVTVTR	10	Unmodified	_SSASSVTVTR_					0	0	0		nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF	nc|ENSG00000160789|P02545-5|LMNA	nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.76202392578125	2	497.76182	993.509088	0.079744	3.9693E-05	0.15407	7.6692E-05	0.23382	0.00011639	497.76197713915093	23.281	0.34509	23.383	23.274	23.619	0.10178					63	33	3	0	0	0	0.45313	2	2232	2232;2264		4.1895	4.1895	1	48378			19554	3778	12953	13084	26329;26330	26329					0.012073741955987316
SSCLHTSTLW	10	Unmodified	_SSCLHTSTLW_					0	0	0		ENST00000515035.5_1_5:149754429-149754786:+|nuORF	ENST00000515035.5_1_5:149754429-149754786:+|nuORF	ENST00000515035.5_1_5:149754429-149754786:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.330078125	2	567.766049	1133.51754	0.29414	0.000167	-0.73002	-0.00041448	-0.43588	-0.00024748	567.7653573683725	88.228	0.55464	88.258	87.906	88.46	0.030037					35	19	2	0	0	0	0.31496	1	21766	21766		13.906	0	1	234810			19555	6933	12954	13085	26331	26331					-0.04387395159460539
SSCLLAEPGL	10	Unmodified	_SSCLLAEPGL_					0	0	0			REV__ENST00000592495.1_1_19:11959764-11960064:+|nuORF	REV__ENST00000592495.1_1_19:11959764-11960064:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.25213623046875	2	495.252243	988.489932	0.53013	0.00026255	-0.16519	-8.1809E-05	0.36494	0.00018074	495.2521773814119	47.676	0.93172	47.676	47.087	48.018	0					38	31	2	0	0	0	0.41688	1	9641	9641		10.074	0	1	56232	+		19556	12589	12955	13086	26332	26332					-0.004772984196847574
SSDIYNEL	8	Unmodified	_SSDIYNEL_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2;ENST00000482393.1_1_13:103309549-103320211:+|nuORF;ENST00000466153.5_1_13:103307300-103330663:+|nuORF	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7160339355469	2	470.716547	939.418542	0.023749	1.1179E-05	-1.8201	-0.00085676	-1.7964	-0.00084559	470.71561493153337	50.201	0.40758	50.201	49.996	50.404	0					35	14	3	0	0	0	0.49148	1	10361	10361		13.906	3.0821	1	147160			19557	2699	12956	13087	26333	26333					-0.053590948527016735
SSDPGQPVL	9	Unmodified	_SSDPGQPVL_					0	0	0		nc|ENSG00000137393|Q7Z419-2|RNF144B;ENSG00000137393|ENST00000259939|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2267150878906	2	450.227082	898.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.125	1	46.125	45.625	46.625	0								0	0	0	0.22786	1	9143	9143		13.906	3.8321	1				19558	2848	12957	13088	26334	26334					-0.01367084753189829
SSDPGQPVL	9	Unmodified	_SSDPGQPVL_					0	0	0		nc|ENSG00000137393|Q7Z419-2|RNF144B;ENSG00000137393|ENST00000259939|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.22650146484375	2	450.227082	898.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.293	1	46.293	45.793	46.793	0								0	0	0	0.22786	1	9194	9194		13.906	5.3128	1				19559	2848	12957	13088	26335	26335					-0.01367084753189829
SSDPGQPVL	9	Unmodified	_SSDPGQPVL_					0	0	0		nc|ENSG00000137393|Q7Z419-2|RNF144B;ENSG00000137393|ENST00000259939|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.2267150878906	2	450.227082	898.439611	-0.029189	-1.3142E-05	-0.5278	-0.00023763	-0.55699	-0.00025077	450.2267287874057	46.089	0.54172	46.175	45.885	46.426	0.085617					47	19	3	0	0	0	0.24021	3	9005	8962;9005;9051		13.906	5.3128	1	125190			19560	2848	12957	13088	26336;26337;26338	26337					-0.01367084753189829
SSDSEDEDK	9	Unmodified	_SSDSEDEDK_					0	0	0		ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	ENST00000481407.5_1_7:92191598-92207100:-|nuORF	ENST00000481407.5_1_7:92191598-92207100:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2337951660156	2	506.191091	1010.36763	0.30986	0.00015685	-0.75453	-0.00038194	-0.44468	-0.00022509	506.1907179631045	57.282	0.53209	57.282	57.065	57.597	0					33	18	2	0	0	0	0.25644	1	12564	12564		3.9444	3.9444	1	210000			19561	5623	12958	13089	26339	26339					-0.13714088688220727
SSEDEHFI	8	Unmodified	_SSEDEHFI_					0	0	0		ENSG00000173261|ENST00000311450|PLAC8L1	ENSG00000173261|ENST00000311450|PLAC8L1	ENSG00000173261|ENST00000311450|PLAC8L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2082214355469	2	482.206347	962.39814	0.028592	1.3787E-05	3.4669	0.0016718	3.4955	0.0016855	482.2079559670679	37.44	0.52231	37.525	37.162	37.684	0.084476					21	18	2	0	0	0	0.3576	1	6410	6410		2.5775	0.51773	1	33639			19562	4539	12959	13090	26340	26340					-0.08456265512506889
SSEDEHFI	8	Unmodified	_SSEDEHFI_					0	0	0		ENSG00000173261|ENST00000311450|PLAC8L1	ENSG00000173261|ENST00000311450|PLAC8L1	ENSG00000173261|ENST00000311450|PLAC8L1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	482.206347	962.39814	0.019632	9.4665E-06	3.6283	0.0017496	3.6479	0.001759	482.2080187648414	37.595	0.28208	37.595	37.417	37.7	0	0.035028	3.5379E-05	NaN	2.5775	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51820			19563	4539	12959	13090							-0.08456265512506889
SSEGQPFSR	9	Unmodified	_SSEGQPFSR_					0	0	0		ENST00000496406.1_1_2:160084338-160084836:+|nuORF	ENST00000496406.1_1_2:160084338-160084836:+|nuORF	ENST00000496406.1_1_2:160084338-160084836:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7327880859375	2	497.733063	993.451573	-0.033446	-1.6647E-05	-0.21245	-0.00010574	-0.24589	-0.00012239	497.732896510515	30.897	0.31243	30.897	30.712	31.024	0					26	14	2	0	0	0	0.32614	1	4579	4579		3.2813	0.54611	1	29028			19564	6838	12960	13091	26341	26341					-0.04541468009995242
SSEMEQLDRP	10	Unmodified	_SSEMEQLDRP_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2685546875	2	596.269152	1190.52375	0.11652	6.9475E-05	-0.86646	-0.00051664	-0.74994	-0.00044717	596.26851305438	106.27	0.601	106.3	106.03	106.63	0.029739					132	68	4	0	0	0	0.46827	1	27236	27236		1.3295	0	1	216150			19565	7526	12961	13092	26342	26342					-0.06388921718598795
SSFFDDPVL	9	Unmodified	_SSFFDDPVL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1;nc|ENSG00000157613|Q96BA8-2|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.742431640625	2	513.742565	1025.47058	0.77519	0.00039825	-0.49146	-0.00025249	0.28373	0.00014576	513.7422816673544	81.846	0.43523	81.846	81.601	82.036	0					32	14	3	0	0	0	0.10833	1	20003	20003		30.637	8.8899	1	180660			19566	3661	12962	13093	26343	26343					-0.0411393143897385
SSFFDDPVL	9	Unmodified	_SSFFDDPVL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1;nc|ENSG00000157613|Q96BA8-2|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7423095703125	2	513.742565	1025.47058	0.42065	0.00021611	-0.012243	-6.29E-06	0.40841	0.00020982	513.7424525545849	81.777	0.51749	81.799	81.616	82.133	0.021866					36	17	3	0	0	0	0.10833	1	19847	19847		30.637	8.8899	1	190870			19567	3661	12962	13093	26344	26344					-0.0411393143897385
SSFSEVSSF	9	Unmodified	_SSFSEVSSF_					0	0	0		nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2430114746094	2	488.716547	975.418542	-0.078856	-3.8538E-05	-0.5619	-0.00027461	-0.64076	-0.00031315	488.71612695406657	45.245	0.62088	45.333	44.906	45.527	0.08754					28	23	2	0	0	0	0.25174	1	8692	8692		7.2892	2.0586	1	29897			19568	831	12963	13094	26345	26345					-0.07015094852704351
SSFWELPE	8	Unmodified	_SSFWELPE_					0	0	0		ENST00000300853.7_1_19:45912205-45912715:-|nuORF	ENST00000300853.7_1_19:45912205-45912715:-|nuORF	ENST00000300853.7_1_19:45912205-45912715:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.72845458984375	2	497.729458	993.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.819	1	36.819	36.319	37.319	0								0	0	0	0.38822	1	6334	6334		0.69038	0.16561	1				19569	5974	12964	13095	26346	26346					-0.05262200610422951
SSGTVFQLLRA	11	Unmodified	_SSGTVFQLLRA_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8311157226562	2	589.830037	1177.64552	0.37374	0.00022044	-0.1712	-0.00010098	0.20254	0.00011946	589.8298000985939	49.618	0.30384	49.695	49.568	49.871	0.076603					17	10	2	0	0	0	0.41422	1	10065	10065		1.0715	0.46996	1	70600	+		19570	8628	12965	13096	26347	26347					0.06380488426111697
SSHLPTLLL	9	Unmodified	_SSHLPTLLL_					0	0	0		ENST00000357258.8_2_3:114050167-114050428:-|nuORF	ENST00000357258.8_2_3:114050167-114050428:-|nuORF	ENST00000357258.8_2_3:114050167-114050428:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7920227050781	2	490.792392	979.570232	0.45429	0.00022296	-0.084831	-4.1634E-05	0.36946	0.00018133	490.79225170298963	68.082	0.92026	68.145	67.874	68.794	0.063499					77	34	3	0	0	0	0.29576	1	15822	15822		7.2892	0	1	727480			19571	6131	12966	13097	26348	26348					0.07962930965663872
SSIDAGYEV	9	Unmodified	_SSIDAGYEV_					0	0	0			REV__ENSG00000073614|ENST00000399788|KDM5A	REV__ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.71551513671875	2	470.716547	939.418542	0.0061838	2.9108E-06	-1.7762	-0.0008361	-1.77	-0.00083319	470.7157505032072	50.106	0.42894	50.179	49.956	50.385	0.07312					31	14	3	0	0	0	0.27332	1	10249	10249		10.074	0.6908	1	119770	+		19572	8177	12967	13098	26349	26349					-0.05359094852713042
SSIDSEPAL	9	Unmodified	_SSIDSEPAL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7243957519531	2	459.724372	917.434192	0.30021	0.00013801	-0.063499	-2.9192E-05	0.23671	0.00010882	459.72424624579725	50.197	0.7188	50.197	49.906	50.624	0					78	25	4	0	0	0	3.0281E-09	4	10391	10343;10391;10433;10481		171.47	111.08	1	966170			19573	1358	12968	13099	26350;26351;26352;26353	26351					-0.027828083356666866
SSIDSEPAL	9	Unmodified	_SSIDSEPAL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7244567871094	2	459.724372	917.434192	0.13781	6.3356E-05	0.18233	8.382E-05	0.32014	0.00014718	459.7243293778535	50.115	0.71129	50.188	49.927	50.638	0.07312					68	24	4	0	0	0	1.7467E-05	3	10235	10187;10235;10284		141.83	88.251	1	841960			19574	1358	12968	13099	26354;26355;26356	26355					-0.027828083356666866
SSKESSRILDG	11	Unmodified	_SSKESSRILDG_					0	0	0		TCOF1|p.S1050L|1|0.31|ENSG00000070814|chr5:150389989-150389989|C/T|missense_variant	TCOF1|p.S1050L|1|0.31|ENSG00000070814|chr5:150389989-150389989|C/T|missense_variant	TCOF1|p.S1050L|1|0.31|ENSG00000070814|chr5:150389989-150389989|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.305908203125	2	589.804217	1177.59388	0.39775	0.0002346	0.43741	0.00025799	0.83517	0.00049259	589.8043515339043	15.583	0.19127	15.656	15.569	15.76	0.072399					46	24	2	0	0	0	0.41422	1	531	531		1.0715	0.5467	1	44442			19575	13427	12969	13100	26357	26357					0.012186999415234823
SSKMSDAEEWN	11	Unmodified	_SSKMSDAEEWN_					0	0	0			REV__nc|ENSG00000131323|Q13114-2|TRAF3	REV__nc|ENSG00000131323|Q13114-2|TRAF3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.2648315429688	2	642.264067	1282.51358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.844	1	98.886	98.386	99.386	0.041931								0	0	0	0.3362	1	25040	25040		2.086	0	1		+		19576	9081	12970	13101	26358	26358					-0.11637529443828498
SSLEAEAYA	9	Unmodified	_SSLEAEAYA_					0	0	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7165832519531	2	470.716547	939.418542	0.0061838	2.9108E-06	-1.7762	-0.0008361	-1.77	-0.00083319	470.7157505032072	50.106	0.42894	50.179	49.956	50.385	0.07312					31	14	3	0	0	0	0.30005	1	10198	10198		6.7232	0	1	119770			19577	2249	12971	13102	26359	26359					-0.05359094852724411
SSLEYPRSYP	10	Unmodified	_SSLEYPRSYP_					0	0	0		ENSG00000159403|ENST00000647956|C1R;nc|ENSG00000159403|P00736|C1R;ENST00000540394.2_12:7241870-7244269:-|nuORF	ENSG00000159403|ENST00000647956|C1R	ENSG00000159403|ENST00000647956|C1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8090209960938	2	599.790578	1197.5666	0.37331	0.00022391	0.70212	0.00042112	1.0754	0.00064503	599.7908738483874	62.789	0.72353	62.861	62.503	63.227	0.072701					41	27	2	0	0	0	0.42335	1	14178	14178		9.3831	1.2276	1	273720			19578	3729	12972	13103	26360	26360					-0.024277835988641527
SSLLSGRISTL	11	Unmodified	_SSLLSGRISTL_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;SHKBP1|p.W205Cfs*48|1|0.21|ENSG00000160410|chr19:40580617-40580621|GGATC/-|frameshift_variant;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3291015625	2	567.32987	1132.64519	0.46291	0.00026262	-0.51188	-0.0002904	-0.048966	-2.778E-05	567.3294006541275	98.929	0.42397	98.929	98.715	99.139	0					40	28	2	0	0	0	0.40578	1	25223	25223		2.9952	0	1	80227			19579	3760	12973	13104	26361	26361					0.08417068706239661
SSNLELHSL	9	Unmodified	_SSNLELHSL_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.25860595703125	2	500.258914	998.503274	-0.19397	-9.7036E-05	-0.017314	-8.6616E-06	-0.21129	-0.0001057	500.25886423129884	45.465	0.55232	45.465	45.205	45.757	0					53	18	5	0	0	0	0.00041987	2	8933	8933;8977		133.05	54.903	1	516570			19580	2819	12974	13105	26362;26363	26362					0.003962756839086978
SSNLELHSL	9	Unmodified	_SSNLELHSL_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2588806152344	2	500.258914	998.503274	0.071549	3.5793E-05	0.10402	5.2037E-05	0.17557	8.783E-05	500.2588787757435	45.375	0.51646	45.463	45.237	45.754	0.08754					47	19	3	0	0	0	1.3975E-05	2	8781	8781;8830		145.13	56.176	1	419100			19581	2819	12974	13105	26364;26365	26364					0.003962756839086978
SSNSVTIV	8	Unmodified	_SSNSVTIV_					0	0	0			REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20	REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.54144287109375	2	403.71635	805.418148	-0.28064	-0.0001133	2.7797	0.0011222	2.499	0.0010089	403.71540202277436	30.865	0.26258	30.939	30.783	31.046	0.073782					15	12	2	0	0	0	0.3576	1	4416	4416		2.3027	0	1	9616.7	+		19582	10538	12975	13106	26366	26366					0.007655302181206025
SSPSRVGVTGH	11	Unmodified	_SSPSRVGVTGH_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7885131835938	2	542.280712	1082.54687	-0.35794	-0.00019411	0.013436	7.2862E-06	-0.34451	-0.00018682	542.2805899983684	16.581	0.1672	16.581	16.49	16.657	0					27	20	2	0	0	0	0.31102	1	743	743		0	0	1	14323			19583	1105	12976	13107	26367	26367					0.008898851810727137
SSQGWETGQF	10	Unmodified	_SSQGWETGQF_					0	0	0			REV__nc|ENSG00000133961|P49757-6|NUMB	REV__nc|ENSG00000133961|P49757-6|NUMB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7425537109375	2	563.743628	1125.4727	0.13472	7.5949E-05	-1.1871	-0.00066922	-1.0524	-0.00059327	563.7426071603429	89.618	0.41482	89.618	89.445	89.86	0					31	15	3	0	0	0	0.45945	1	22439	22439		2.9952	0.10602	1	121150	+		19584	12794	12977	13108	26368	26368					-0.08501502701142272
SSQGWETGQF	10	Unmodified	_SSQGWETGQF_					0	0	0			REV__nc|ENSG00000133961|P49757-6|NUMB	REV__nc|ENSG00000133961|P49757-6|NUMB	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	563.743628	1125.4727	0.13472	7.5949E-05	-1.1871	-0.00066922	-1.0524	-0.00059327	563.7426071603429	89.618	0.41482	89.618	89.445	89.86	0	-0.024915	0.00030978	NaN	2.9952	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121150	+		19585	12794	12977	13108							-0.08501502701142272
SSQLDACTM	9	Unmodified	_SSQLDACTM_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.19659423828125	2	478.19661	954.378667	0.00056746	2.7136E-07	-0.23835	-0.00011398	-0.23778	-0.00011371	478.19642197012104	37.169	0.63823	37.253	37.046	37.684	0.084476					36	22	2	0	0	0	0.27929	1	6303	6303		9.3831	0	1	139920			19586	5359	12978	13109	26369	26369					-0.10034681119293509
SSRKKLIEE	9	Unmodified	_SSRKKLIEE_					0	0	0		tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.31689453125	2	545.316763	1088.61897	0.68775	0.00037504	0.10642	5.8032E-05	0.79417	0.00043308	545.3166235342397	84.597	2.8839	84.597	83.9	86.784	0					354	131	3	0	0	0	0.32375	1	20717	20717		3.5965	0	1	6479300			19587	13651	12979	13110	26370	26370					0.07820799534761136
SSRKRLVE	8	Unmodified	_SSRKRLVE_					0	0	0			REV__ENSG00000156234|ENST00000682537|CXCL13	REV__ENSG00000156234|ENST00000682537|CXCL13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7907409667969	2	487.790715	973.566878	0.2243	0.00010941	0.13584	6.6264E-05	0.36015	0.00017568	487.7906907049716	78.727	3.2748	78.727	77.685	80.959	0					178	113	3	0	0	0	0.53494	2	18955	18908;18955		4.756	2.1785	1	978190	+		19588	9749	12980	13111	26371;26372	26372					0.0790368091164737
SSRKRLVE	8	Unmodified	_SSRKRLVE_					0	0	0			REV__ENSG00000156234|ENST00000682537|CXCL13	REV__ENSG00000156234|ENST00000682537|CXCL13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7903137207031	2	487.790715	973.566878	0.22424	0.00010938	0.09416	4.593E-05	0.3184	0.00015531	487.79066666432016	76.857	0.8513	76.896	76.332	77.183	0.03923					53	30	2	0	0	0	0.53894	1	18344	18344		2.0598	2.0598	1	269090	+		19589	9749	12980	13111	26373	26373					0.0790368091164737
SSRKRLVE	8	Unmodified	_SSRKRLVE_					0	0	0			REV__ENSG00000156234|ENST00000682537|CXCL13	REV__ENSG00000156234|ENST00000682537|CXCL13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7908020019531	2	487.790715	973.566878	0.2262	0.00011034	0.094244	4.5971E-05	0.32045	0.00015631	487.7907044487439	78.774	2.9857	78.804	78.021	81.007	0.030159					180	105	4	0	0	0	0.53494	1	18839	18839		4.756	0.42677	1	1403600	+		19590	9749	12980	13111	26374	26374					0.0790368091164737
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2908020019531	2	501.290548	1000.56654	0.77457	0.00038829	-0.082864	-4.1539E-05	0.69171	0.00034675	501.2904008193115	80.898	3.0648	80.898	79.958	83.023	0					366	106	4	0	0	0	0.27332	4	19743	19743;19792;19836;19879		10.074	3.3508	1	2422800	+		19591	11104	12981	13112	26375;26376;26377;26378	26375					0.06628261191804086
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2908020019531	2	501.290548	1000.56654	0.54985	0.00027564	0.11799	5.9149E-05	0.66785	0.00033478	501.2905139234308	80.889	3.0008	80.913	80.018	83.019	0.023605					358	107	5	0	0	0	0.27332	4	19526	19385;19526;19740;19827		10.074	5.3179	1	2978500	+		19592	11104	12981	13112	26379;26380;26381;26382	26380					0.06628261191804086
SSRRRWKDS	9	Unmodified	_SSRRRWKDS_					0	0	0			REV__ENST00000527461.5_1_12:123007437-123011480:-|nuORF	REV__ENST00000527461.5_1_12:123007437-123011480:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3432006835938	2	589.312877	1176.6112	0.49664	0.00029268	0.26446	0.00015585	0.7611	0.00044853	589.3130486483171	86.427	0.19672	86.452	86.41	86.607	0.025169					12	8	2	0	0	0	0.25281	1	21258	21258		6.7232	0.51738	1	103480	+		19593	12337	12982	13113	26383	26383					0.02996085057839082
SSRTSVRLL	9	Unmodified	_SSRTSVRLL_					0	0	0			REV__KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	REV__KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.803955078125	2	509.803823	1017.59309	0.75821	0.00038654	-0.2462	-0.00012552	0.512	0.00026102	509.803620416363	80.911	3.0319	80.911	79.958	82.99	0					316	105	4	0	0	0	0.3182	1	19735	19735		4.3292	0	1	1350800	+		19594	12691	12983	13114	26384	26384					0.08499950083148633
SSSCSLWGTSF	11	Unmodified	_SSSCSLWGTSF_					0	0	0		nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2466430664062	2	581.247689	1160.48082	0.44134	0.00025653	-1.3202	-0.00076737	-0.87887	-0.00051084	581.2467989159908	96.124	0.43417	96.124	95.925	96.359	0					60	23	4	0	0	0	0.35693	1	24330	24330		11.495	0.6952	1	638610			19595	7475	12984	13115	26385	26385					-0.0929969177602743
SSSGLRYPQ	9	Unmodified	_SSSGLRYPQ_					0	0	0		ENST00000312175.6_1_11:65769958-65770033:+|nuORF	ENST00000312175.6_1_11:65769958-65770033:+|nuORF	ENST00000312175.6_1_11:65769958-65770033:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.75146484375	2	497.751256	993.487959	-0.09395	-4.6764E-05	-0.57845	-0.00028793	-0.6724	-0.00033469	497.75105494444017	26.136	0.39579	26.136	25.971	26.366	0					53	32	2	0	0	0	0.33849	1	3153	3153		1.6526	0	1	40275			19596	6006	12985	13116	26386	26386					-0.00904591113294373
SSSPHAPESE	10	Unmodified	_SSSPHAPESE_					0	0	0		ENST00000483661.5_1_20:18005282-18039681:-|nuORF;ENSG00000125850|ENST00000278780|OVOL2	ENST00000483661.5_1_20:18005282-18039681:-|nuORF	ENST00000483661.5_1_20:18005282-18039681:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2194213867188	2	514.219985	1026.42542	-0.12572	-6.4649E-05	0.31503	0.000162	0.18931	9.7346E-05	514.2199867289102	26.769	0.42742	26.769	26.559	26.986	0					47	28	2	0	0	0	0.44496	2	3358	3317;3358		5.7319	5.7319	1	27506			19597	2317	12986	13117	26387;26388	26388					-0.08673781972129291
SSSPHAPESE	10	Unmodified	_SSSPHAPESE_					0	0	0		ENST00000483661.5_1_20:18005282-18039681:-|nuORF;ENSG00000125850|ENST00000278780|OVOL2	ENST00000483661.5_1_20:18005282-18039681:-|nuORF	ENST00000483661.5_1_20:18005282-18039681:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2196655273438	2	514.219985	1026.42542	-0.060255	-3.0984E-05	0.39331	0.00020225	0.33305	0.00017126	514.2200046231048	26.573	0.39527	26.66	26.515	26.91	0.0867					54	29	2	0	0	0	0.44496	3	3146	3138;3146;3184		5.7319	5.7319	1	26523			19598	2317	12986	13117	26389;26390;26391	26390					-0.08673781972129291
SSSPKALHSSS	11	Unmodified	_SSSPKALHSSS_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2737426757812	2	544.272552	1086.53055	0.36183	0.00019693	2.018	0.0010983	2.3798	0.0012953	544.2734250505464	101.42	0.41531	101.42	101.23	101.65	0					57	25	3	0	0	0	0.40977	1	25973	25973		2.086	0.43339	1	100970	+		19599	9667	12987	13118	26392	26392					-0.009252407757003311
SSSRSIFGSML	11	Unmodified	_SSSRSIFGSML_					0	0	0		nc|ENSG00000175727|Q9HAP2-3|MLXIP;ENSG00000175727|ENST00000319080|MLXIP	nc|ENSG00000175727|Q9HAP2-3|MLXIP	nc|ENSG00000175727|Q9HAP2-3|MLXIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.8087768554688	2	586.29243	1170.57031	0.80432	0.00047157	-0.14937	-8.7577E-05	0.65495	0.00038399	586.292242769446	64.056	0.67466	64.127	63.914	64.589	0.071014					62	23	4	0	0	0	0.27921	1	14583	14583		20.415	4.2654	1	729350			19600	4636	12988	13119	26393	26393					-0.008154370966394708
SSSTSSPF	8	Unmodified	_SSSTSSPF_					0	0	0			REV__MAGEC1|p.V831E|1|0.41|ENSG00000155495|chrX:141907896-141907896|T/A|missense_variant	REV__MAGEC1|p.V831E|1|0.41|ENSG00000155495|chrX:141907896-141907896|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	400.17755126953125	2	400.177058	798.339563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.99	1	101.99	101.49	102.49	0								0	0	0	0.38822	1	26152	26152		5.7604	2.8712	1		+		19601	9728	12989	13120	26394	26394					-0.06767322086989225
SSSTVVSTQR	10	Unmodified	_SSSTVVSTQR_					0	0	0		ENSG00000116001|ENST00000433529|TIA1;nc|ENSG00000116001|P31483-3|TIA1	ENSG00000116001|ENST00000433529|TIA1	ENSG00000116001|ENST00000433529|TIA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7722778320312	2	526.272552	1050.53055	-0.30727	-0.00016171	-1.6074	-0.00084593	-1.9147	-0.0010076	526.7726759024846	21.559	0.39148	21.559	21.402	21.793	0					85	36	3	0	0	0	0.46208	1	1900	1900		2.4985	0.65425	1	37219			19602	1935	12990	13121	26395	26395					0.00730759224279609
SSTESRDAN	9	Unmodified	_SSTESRDAN_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2329406738281	2	483.709785	965.405017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.518	1	56.518	56.018	57.018	0								0	0	0	0.28073	1	12301	12301		2.9952	0.41776	1		+		19603	8324	12991	13122	26396	26396					-0.07906952631947206
SSTEVLYVNR	10	Unmodified	_SSTEVLYVNR_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3045654296875	2	584.303852	1166.59315	0.023245	1.3582E-05	0.55078	0.00032182	0.57402	0.0003354	584.3041681029827	40.206	0.23954	40.206	40.042	40.281	0					11	8	2	0	0	0	0.44496	1	7342	7342		5.7319	1.4026	1	23439			19604	1400	12992	13123	26397	26397					0.01651905292465017
SSTFFFGHWF	10	Unmodified	_SSTFFFGHWF_					0	0	0			REV__ENST00000508941.5_1_5:35856265-35860978:+|nuORF	REV__ENST00000508941.5_1_5:35856265-35860978:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5265808105469	3	421.525825	1261.55564	-0.1311	-5.5264E-05	1.6754	0.00070622	1.5443	0.00065096	421.5265818225263	44.911	0.63712	44.998	44.783	45.42	0.08754					50	24	3	0	0	0	0.46656	1	8635	8635		0.69767	0	1	216260	+		19605	12244	12993	13124	26398	26398					-0.06467141182474734
SSTFTLLCL	9	Unmodified	_SSTFTLLCL_					0	0	0			REV__nc|ENSG00000017427|P05019-3|IGF1	REV__nc|ENSG00000017427|P05019-3|IGF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.75640869140625	2	492.757161	983.499769	0.47291	0.00023303	-0.56023	-0.00027606	-0.087318	-4.3027E-05	492.7568911128027	82.905	0.49394	82.905	82.757	83.251	0					26	16	2	0	0	0	0.073832	1	20348	20348		38.151	0	1	78640	+		19606	7992	12994	13125	26399	26399					0.00735889585678251
SSTFTLLCL	9	Unmodified	_SSTFTLLCL_					0	0	0			REV__nc|ENSG00000017427|P05019-3|IGF1	REV__nc|ENSG00000017427|P05019-3|IGF1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	492.757161	983.499769	0.33018	0.0001627	-0.33413	-0.00016465	-0.0039583	-1.9505E-06	492.7569709063888	82.916	0.48841	82.938	82.705	83.194	0.021751	0.016459	8.5277E-05	NaN	38.151	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78471	+		19607	7992	12994	13125							0.00735889585678251
SSTLDPFPRAE	11	Unmodified	_SSTLDPFPRAE_					0	0	0			REV__ENSG00000106546|ENST00000242057|AHR	REV__ENSG00000106546|ENST00000242057|AHR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.2039794921875	3	407.203299	1218.58807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.06	1	21.06	20.56	21.56	0								0	0	0	0.34185	1	1760	1760		0.094841	0	1		+		19608	8576	12995	13126	26400	26400					-0.012483985701237543
SSTSVVELVM	10	Unmodified	_SSTSVVELVM_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7722778320312	2	526.270632	1050.52671	-0.30727	-0.00016171	2.0407	0.001074	1.7335	0.00091227	526.7726759024846	21.559	0.39148	21.559	21.402	21.793	0					85	36	3	0	0	0	0.44246	1	1896	1896		6.2058	0.9089	1	37219			19609	4519	12996	13127	26401	26401					0.0034695340623329685
SSTSVVELVM	10	Unmodified	_SSTSVVELVM_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	526.270632	1050.52671	-0.027501	-1.4473E-05	1.62	0.00085258	1.5925	0.00083811	526.7723124870281	21.576	0.062635	21.678	21.659	21.721	0.10178	0.05966	-0.00042548	NaN	6.2058	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11617			19610	4519	12996	13127							0.0034695340623329685
SSVAPVASLS	10	Unmodified	_SSVAPVASLS_					0	0	0		sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2500305175781	2	459.250557	916.486562	0.45303	0.00020805	-1.654	-0.00075962	-1.201	-0.00055157	459.2496203735342	84.781	0.40006	84.804	84.691	85.091	0.023125					31	17	2	0	0	0	0.45627	1	20748	20748		3.5965	0	1	196290			19611	13387	12997	13128	26402	26402					0.024977747979505693
SSVGKNKL	8	Unmodified	_SSVGKNKL_					0	0	0			REV__tr|U7SFY3|U7SFY3_FUSNURibosomalRNAlargesubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmHPE=3SV=1	REV__tr|U7SFY3|U7SFY3_FUSNURibosomalRNAlargesubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmHPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.22821044921875	2	416.747985	831.481417	0.10278	4.2835E-05	-0.14829	-6.18E-05	-0.045507	-1.8965E-05	416.74784336000613	39.865	0.51949	39.865	39.661	40.18	0					19	17	2	0	0	0	0.3576	1	7201	7201		0.6015	0	1	40047	+		19612	13042	12998	13129	26403	26403					0.05893515725983889
SSVGKNKL	8	Unmodified	_SSVGKNKL_					0	0	0			REV__tr|U7SFY3|U7SFY3_FUSNURibosomalRNAlargesubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmHPE=3SV=1	REV__tr|U7SFY3|U7SFY3_FUSNURibosomalRNAlargesubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmHPE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	416.747985	831.481417	-0.13202	-5.5019E-05	0.078853	3.2862E-05	-0.053167	-2.2157E-05	416.7479844912912	39.713	0.60183	39.801	39.634	40.236	0.088562	-0.03208	6.1106E-05	NaN	0.6015	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44016	+		19613	13042	12998	13129							0.05893515725983889
SSYQTRYF	8	Unmodified	_SSYQTRYF_					0	0	0			REV__ENST00000531486.1_1_17:45681241-45696545:+|nuORF	REV__ENST00000531486.1_1_17:45681241-45696545:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2457885742188	2	526.245806	1050.47706	0.019706	1.037E-05	-0.79489	-0.00041831	-0.77518	-0.00040794	526.2453040597212	19.798	0.20869	19.894	19.807	20.016	0.095234					33	24	2	0	0	0	0.54097	1	1357	1357		0.69038	0	1	17728	+		19614	9391	12999	13130	26404	26404					-0.04615993487595915
STAAGPEDQPL	11	Unmodified	_STAAGPEDQPL_					0	0	0		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.25732421875	2	543.259111	1084.50367	0.18889	0.00010262	-2.209	-0.0012001	-2.0201	-0.0010975	543.2576021709555	51.546	0.53474	51.546	51.179	51.713	0					30	17	3	0	0	0	0.38555	1	10789	10789		7.609	0.88579	1	61402			19615	5094	13000	13131	26405	26405					-0.0352034938689485
STAKIQIVR	9	Unmodified	_STAKIQIVR_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.3168029785156	2	508.316566	1014.61858	-0.19016	-9.6663E-05	0.15118	7.6847E-05	-0.038984	-1.9816E-05	508.3165995503684	28.552	0.37785	28.552	28.423	28.801	0					35	16	3	0	0	0	0.24021	1	3870	3870		13.906	10.625	1	79629			19616	1702	13001	13132	26406	26406					0.11185424605582739
STAKIQIVR	9	Unmodified	_STAKIQIVR_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.3165588378906	2	508.316566	1014.61858	-0.14844	-7.5454E-05	0.040886	2.0783E-05	-0.10755	-5.4671E-05	508.31657368879905	28.478	0.45274	28.56	28.399	28.852	0.082134					51	24	3	0	0	0	0.24767	1	3715	3715		13.042	6.8367	1	69851			19617	1702	13001	13132	26407	26407					0.11185424605582739
STANIDDLK	9	Unmodified	_STANIDDLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7502746582031	2	488.750921	975.48729	-0.12156	-5.9415E-05	-1.0023	-0.00048989	-1.1239	-0.00054931	488.75016537466524	33.884	0.32005	33.884	33.771	34.091	0					19	11	3	0	0	0	0.28919	1	5465	5465		8.1555	2.4237	1	42149			19618	4617	13002	13133	26408	26408					-0.0014343055298695617
STCAWNAFPV	10	Unmodified	_STCAWNAFPV_					0	0	0		ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000503862.5_3_4:108746377-108829880:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2501831054688	2	548.250034	1094.48552	0.57883	0.00031734	0.17958	9.8455E-05	0.75841	0.0004158	548.2500339553761	92.301	0.73872	92.301	91.869	92.608	0					65	27	3	0	0	0	0.45794	1	23258	23258		3.2813	0.28607	1	188260			19619	6878	13003	13134	26409	26409					-0.0579476284260636
STCCLKYY	8	Unmodified	_STCCLKYY_					0	0	0		ENSG00000275152|ENST00000611905|CCL16	ENSG00000275152|ENST00000611905|CCL16	ENSG00000275152|ENST00000611905|CCL16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.71380615234375	2	490.714439	979.414325	-0.039094	-1.9184E-05	-0.95416	-0.00046822	-0.99325	-0.0004874	490.71387920782774	90.559	0.50405	90.593	90.352	90.856	0.034065					37	20	2	0	0	0	0.53817	1	22567	22567		2.5775	0	1	257760			19620	5746	13004	13135	26410	26410					-0.07620598871631046
STDHIPILYR	10	Unmodified	_STDHIPILYR_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5557861328125	3	405.555784	1213.64552	0.30655	0.00012432	-0.48693	-0.00019748	-0.18038	-7.3155E-05	405.5556219142168	46.427	0.35947	46.427	46.156	46.516	0					30	12	3	0	0	0	0.29808	1	9234	9234		22.775	16.992	1	180510			19621	5362	13005	13136	26411	26411					0.04724488426109019
STDHIPILYR	10	Unmodified	_STDHIPILYR_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.89019775390625	3	405.555784	1213.64552	-0.092935	-3.769E-05	-0.28964	-0.00011746	-0.38257	-0.00015515	405.555746753419	46.366	0.44621	46.452	46.055	46.502	0.085617					33	15	3	0	0	0	0.26794	1	9090	9090		25.997	21.281	1	222370			19622	5362	13005	13136	26412	26412					0.04724488426109019
STDYETHEF	9	Unmodified	_STDYETHEF_					0	0	0		nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7271728515625	2	564.727643	1127.44073	0.23681	0.00013373	-0.34888	-0.00019702	-0.11207	-6.329E-05	564.7274738278535	37.41	0.44957	37.41	37.25	37.7	0					41	15	4	0	0	0	0.065576	1	6506	6506		39.95	33.227	1	95385			19623	3876	13006	13137	26413	26413					-0.11788915174952308
STDYETHEF	9	Unmodified	_STDYETHEF_					0	0	0		nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7272338867188	2	564.727643	1127.44073	0.27655	0.00015617	-0.36389	-0.0002055	-0.087349	-4.9329E-05	564.7273961209208	37.341	0.52231	37.426	37.162	37.684	0.084476					37	18	3	0	0	0	0.091044	1	6357	6357		34.402	25.019	1	80713			19624	3876	13006	13137	26414	26414					-0.11788915174952308
STEPSEISL	9	Unmodified	_STEPSEISL_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7372131347656	2	481.73748	961.460406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.018	1	63.091	62.591	63.591	0.072701								0	0	0	0.084773	1	14137	14137		37.974	0	1				19625	5385	13007	13138	26415	26415					-0.021865391641881615
STEQQQLI	8	Unmodified	_STEQQQLI_					0	0	0			REV__nc|ENSG00000198265|P42694-2|HELZ	REV__nc|ENSG00000198265|P42694-2|HELZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7456359863281	2	473.745639	945.476725	-0.042212	-1.9998E-05	0.19636	9.3026E-05	0.15415	7.3029E-05	473.7456434360236	58.054	0.57533	58.122	57.869	58.444	0.068375					31	21	2	0	0	0	0.12247	1	12695	12695		50.855	0	1	228790	+		19626	12870	13008	13139	26416	26416					0.0018058679257819676
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1723937988281	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.57	1	51.57	51.07	52.07	0								0	0	0	0.38822	1	10790	10790		0.79363	0	1		+		19627	7866	13009	13140	26417	26417					-0.1317255488304454
STETHEELL	9	Unmodified	_STETHEELL_					0	0	0		ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7540283203125	2	529.753661	1057.49277	0.57029	0.00030211	-0.057621	-3.0525E-05	0.51267	0.00027159	529.7537553552769	54.915	0.99465	54.915	54.614	55.608	0					73	36	3	0	0	0	0.25979	1	12000	12000		11.64	0	1	149130			19628	1679	13010	13141	26418	26418					-0.03367751761174986
STETHEELL	9	Unmodified	_STETHEELL_					0	0	0		ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7552490234375	2	529.753661	1057.49277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.533	1	55.599	55.099	56.099	0.065128								0	0	0	0.23884	1	11863	11863		11.64	1.4569	1				19629	1679	13010	13141	26419	26419					-0.03367751761174986
STEVTEEIF	9	Unmodified	_STEVTEEIF_					0	0	0		ENSG00000100418|ENST00000263256|DESI1;ENST00000463886.1_1_22:41998573-42000148:-|nuORF	ENSG00000100418|ENST00000263256|DESI1	ENSG00000100418|ENST00000263256|DESI1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7947387695312	2	527.750587	1053.48662	0.28304	0.00014938	-1.1251	-0.00059377	-0.84205	-0.00044439	527.7497236542313	88.775	0.62187	88.808	88.679	89.301	0.032265					46	24	3	0	0	0	0.2446	1	22015	22015		11.64	0	1	109810			19630	1197	13011	13142	26420	26420					-0.03798269992716996
STFAVVFRNT	10	Unmodified	_STFAVVFRNT_					0	0	0			REV__ENST00000217289.8_1_20:6104001-6104151:-|nuORF	REV__ENST00000217289.8_1_20:6104001-6104151:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7916259765625	2	571.303655	1140.59276	0.34199	0.00019538	-0.73168	-0.00041801	-0.38969	-0.00022263	571.303043943917	76.389	0.94024	76.428	76.183	77.123	0.03923					111	34	4	0	0	0	0.43972	1	18135	18135		6.7232	0	1	3107600	+		19631	11177	13012	13143	26421	26421					0.028085303632678915
STGAYCGMGEN	11	Unmodified	_STGAYCGMGEN_					0	0	0		SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant;nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4	SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2029418945312	2	545.202424	1088.39029	0.37247	0.00020307	0.42901	0.0002339	0.80148	0.00043697	545.2026335471601	47.864	0.8793	47.864	47.4	48.279	0					89	29	4	0	0	0	0.40578	1	9664	9664		2.9952	0	1	188290			19632	5468	13013	13144	26422	26422					-0.15036484095958258
STGAYCGMGEN	11	Unmodified	_STGAYCGMGEN_					0	0	0		SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant;nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4	SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2027587890625	2	545.202424	1088.39029	0.51235	0.00027933	0.61826	0.00033708	1.1306	0.00061641	545.2025266664106	47.542	0.71279	47.624	47.405	48.117	0.082935					51	27	4	0	0	0	0.39744	1	9499	9499		4.897	0.95262	1	157820			19633	5468	13013	13144	26423	26423					-0.15036484095958258
STGAYCGMGEN	11	Unmodified	_STGAYCGMGEN_					0	0	0		SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant;nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4	SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	545.202424	1088.39029	0.37247	0.00020307	0.42901	0.0002339	0.80148	0.00043697	545.2026335471601	47.864	0.8793	47.864	47.4	48.279	0	0.11968	-6.5526E-05	NaN	4.897	89	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188290			19634	5468	13013	13144							-0.15036484095958258
STGIPYGMSI	10	Unmodified	_STGIPYGMSI_					0	0	0		ENST00000438101.1_1_X:49431298-49432372:-|nuORF;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2611083984375	2	513.252243	1024.48993	-0.22383	-0.00011488	-0.55916	-0.00028699	-0.78299	-0.00040187	513.2520407336613	40.887	0.27592	40.977	40.877	41.153	0.089645					15	10	2	0	0	0	0.38104	1	7430	7430		13.906	0.86358	1	52676			19635	1372	13014	13145	26424	26424					-0.021332984196760663
STGMPPLALSE	11	Unmodified	_STGMPPLALSE_					0	0	0			REV__DMRT3|p.S309Pfs*10|1|0.26|ENSG00000064218|chr9:990511-990511|T/-|frameshift_variant	REV__DMRT3|p.S309Pfs*10|1|0.26|ENSG00000064218|chr9:990511-990511|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7765502929688	2	551.776082	1101.53761	0.88522	0.00048844	1.3471	0.00074328	2.2323	0.0012317	551.7761762618394	81.605	0.87765	81.605	81.265	82.142	0					106	30	6	0	0	0	0.28575	1	19959	19959		24.991	3.2443	1	1003200	+		19636	7883	13015	13146	26425	26425					-0.009096442195186683
STGPEESPCL	10	Unmodified	_STGPEESPCL_					0	0	0			REV__tr|Q8AZK8|Q8AZK8_EBVB9BWRF1(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BCRF2PE=4SV=1	REV__tr|Q8AZK8|Q8AZK8_EBVB9BWRF1(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BCRF2PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2207946777344	2	510.221139	1018.42773	0.18578	9.4787E-05	-0.59257	-0.00030234	-0.40679	-0.00020755	510.22081368304845	36.48	1.0423	36.48	36.208	37.25	0					75	40	3	0	0	0	0.45627	1	6395	6395		3.5965	0	1	125420	+		19637	13033	13016	13147	26426	26426					-0.08075069558697123
STGQYAYLFI	10	Unmodified	_STGQYAYLFI_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7564086914062	2	581.792589	1161.57063	0.58583	0.00034083	-0.38825	-0.00022588	0.19757	0.00011495	581.7919999511851	81.963	0.3148	81.985	81.818	82.133	0.021866					15	10	2	0	0	0	0.31565	1	19921	19921		12.241	2.8932	1	65953			19638	5392	13017	13148	26427	26427					-0.0036969410516576318
STHEKKITI	9	Unmodified	_STHEKKITI_					0	0	0			REV__ENST00000324545.8_2_X:41088534-41088609:+|nuORF	REV__ENST00000324545.8_2_X:41088534-41088609:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8060913085938	2	528.806031	1055.59751	0.27741	0.0001467	-0.10402	-5.5008E-05	0.17339	9.1688E-05	528.8059530875029	51.171	0.57751	51.241	50.978	51.556	0.069874					47	22	3	0	0	0	0.28472	1	10578	10578		8.7454	0	1	242050	+		19639	11404	13018	13149	26428	26428					0.07193414506036788
STIEMPQQAR	10	Unmodified	_STIEMPQQAR_					0	0	0		ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7901611328125	2	580.790055	1159.56556	0.306	0.00017772	-0.60606	-0.000352	-0.30007	-0.00017428	580.7898880949814	36.523	0.65803	36.523	36.259	36.917	0					33	24	2	0	0	0	0.32016	1	6246	6246		20.415	15.118	1	50005			19640	5373	13019	13150	26429	26429					-0.007843212394163857
STIEMPQQAR	10	Unmodified	_STIEMPQQAR_					0	0	0		ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	580.790055	1159.56556	0.40721	0.0002365	-0.45822	-0.00026613	-0.051008	-2.9625E-05	580.7898485939941	36.468	0.42696	36.55	36.312	36.739	0.081715	0.013475	9.6812E-05	NaN	20.415	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47189			19641	5373	13019	13150							-0.007843212394163857
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.305419921875	2	554.803488	1107.59242	0.30853	0.00017118	0.25037	0.00013891	0.55891	0.00031008	554.8035432583716	46.56	0.47911	46.56	46.207	46.686	0					43	26	2	0	0	0	0.0040167	2	9255	9255;9292		103.42	65.445	1	849530			19642	1250;13359	13020	13151	26430;26431	26430					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.8037109375	2	554.803488	1107.59242	0.38127	0.00021153	0.36626	0.0002032	0.74753	0.00041473	554.8033823451116	46.468	0.46048	46.553	46.304	46.765	0.085617					43	29	2	0	0	0	0.0022565	1	9098	9098		114.2	74.252	1	704470			19643	1250;13359	13020	13151	26432	26432					0.0429311064342528
STIGETSNR	9	Unmodified	_STIGETSNR_					0	0	0		ENST00000556687.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	ENST00000556687.5_1_14:23375339-23380602:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7380676269531	2	482.738345	963.462138	-0.60692	-0.00029299	0.44503	0.00021484	-0.16189	-7.815E-05	482.73842370680813	18.826	0.4329	18.826	18.692	19.124	0					104	50	3	0	0	0	0.26104	1	1203	1203		11.495	2.7493	1	94378			19644	7130	13021	13152	26433	26433					-0.021054853555710906
STIINWER	8	Unmodified	_STIINWER_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7679748535156	2	509.769448	1017.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.947	1	17.947	17.447	18.447	0								0	0	0	0.38822	1	1020	1020		0.69038	0	1				19645	1715	13022	13153	26434	26434					0.01628285783431238
STIIQLLLL	9	Unmodified	_STIIQLLLL_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.33331298828125	2	507.333893	1012.65323	-0.11572	-5.8709E-05	1.3783	0.00069926	1.2626	0.00064055	507.3345658187361	111.88	0.44384	111.88	111.84	112.28	0					61	51	2	0	0	0	0.29105	1	28657	28657		7.9102	0.62092	1	1315600	+		19646	9510	13023	13154	26435	26435					0.14741247693677906
STIIQLLLL	9	Unmodified	_STIIQLLLL_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.3342590332031	2	507.333893	1012.65323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.55	1	109.57	109.07	110.07	0.019402								0	0	0	0.2722	1	28020	28020		4.756	2.1785	1		+		19647	9510	13023	13154	26436	26436					0.14741247693677906
STIWCAELV	9	Unmodified	_STIWCAELV_					0	0	0			REV__ENST00000591437.5_1_17:75202822-75202930:+|nuORF	REV__ENST00000591437.5_1_17:75202822-75202930:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2548828125	2	511.254785	1020.49502	0.019406	9.9213E-06	0.2795	0.00014289	0.2989	0.00015281	511.2548774201475	72.859	2.5578	72.859	71.614	74.171	0					189	91	3	0	0	0	0.30005	1	17605	17605		6.7232	0.99131	1	1232300	+		19648	12582	13024	13155	26437	26437					-0.014409945570719174
STKKSCCS	8	Unmodified	_STKKSCCS_					0	0	0		ENST00000377087.3_1_22:31059270-31059315:-|nuORF	ENST00000377087.3_1_22:31059270-31059315:-|nuORF	ENST00000377087.3_1_22:31059270-31059315:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.18853759765625	2	422.188588	842.362623	0.53372	0.00022533	-0.28508	-0.00012036	0.24864	0.00010497	422.18833141504996	101.15	1.234	101.15	100.69	101.92	0					101	80	2	0	0	0	0.54199	2	25848	25848;25893		0	0	1	310370			19649	6250	13025	13156	26438;26439	26438					-0.06486342565528957
STKSRKLDKKP	11	Unmodified	_STKSRKLDKKP_					0	0	0			REV__ENSG00000183035|ENST00000329312|CYLC1	REV__ENSG00000183035|ENST00000329312|CYLC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3116455078125	2	644.390793	1286.76703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.321	1	69.384	68.884	69.884	0.062126								0	0	0	0.33939	1	16047	16047		0.96228	0	1		+		19650	10584	13026	13157	26440	26440					0.1351211078858796
STLDSTDQR	9	Unmodified	_STLDSTDQR_					0	0	0			REV__ENSG00000170871|ENST00000307659|KIAA0232	REV__ENSG00000170871|ENST00000307659|KIAA0232	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.74090576171875	2	511.741085	1021.46762	0.10939	5.5979E-05	-0.17353	-8.8802E-05	-0.064141	-3.2824E-05	511.7409363167161	20.306	0.31918	20.405	20.256	20.575	0.099499					76	33	3	0	0	0	0.32375	1	1487	1487		3.5965	0	1	70500	+		19651	10228	13027	13158	26441	26441					-0.042258065637497566
STMKIIKEEF	10	Unmodified	_STMKIIKEEF_					0	0	0		ENSG00000173464|ENST00000553849|RNASE11	ENSG00000173464|ENST00000553849|RNASE11	ENSG00000173464|ENST00000553849|RNASE11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.21295166015625	3	409.221413	1224.64241	0.081308	3.3273E-05	0.95629	0.00039134	1.0376	0.00042461	409.2217977188739	37.101	1.6361	37.186	36.72	38.356	0.084476					113	60	3	0	0	0	0.45351	1	6501	6501		4.1166	1.0444	1	91878			19652	4547	13028	13159	26442	26442					0.0390747725705296
STMRNMLF	8	Unmodified	_STMRNMLF_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.22613525390625	2	500.241155	998.467757	0.23477	0.00011744	-0.095104	-4.7575E-05	0.13967	6.9866E-05	500.24111343966024	36.192	1.4764	36.274	35.82	37.297	0.081711					90	58	2	0	0	0	0.54097	1	6246	6246		0.69038	0	1	67123	+		19653	11011	13029	13160	26443	26443					-0.031538013691033484
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2636108398438	2	532.263673	1062.51279	-0.045289	-2.4106E-05	0.022668	1.2066E-05	-0.022621	-1.204E-05	532.2634598849629	33.079	0.73825	33.079	32.781	33.519	0					59	28	3	0	0	0	0.2145	2	5224	5179;5224		32.037	18.53	1	138980			19654	6102	13030	13161	26444;26445	26445					-0.015962793022254118
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2634887695312	2	532.263673	1062.51279	0.10305	5.4848E-05	-0.085032	-4.526E-05	0.018013	9.5878E-06	532.2634506893423	33.021	0.60074	33.095	32.914	33.515	0.074322					54	23	3	0	0	0	0.30917	3	5096	5051;5096;5114		21.59	15.858	1	135320			19655	6102	13030	13161	26446;26447;26448	26447					-0.015962793022254118
STNSILCMSPL	11	Unmodified	_STNSILCMSPL_					0	0	0			REV__ENST00000401957.6_1_7:22233026-22233254:-|nuORF	REV__ENST00000401957.6_1_7:22233026-22233254:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.2861328125	2	583.283217	1164.55188	0.34497	0.00020121	4.2849	0.0024993	4.6299	0.0027005	583.2849149129312	39.685	0.38371	39.774	39.634	40.018	0.088562					16	13	2	0	0	0	0.40578	1	7088	7088		2.9952	0	1	26340	+		19656	11756	13031	13162	26449	26449					-0.023813150628484436
STNSILCMSPL	11	Unmodified	_STNSILCMSPL_					0	0	0			REV__ENST00000401957.6_1_7:22233026-22233254:-|nuORF	REV__ENST00000401957.6_1_7:22233026-22233254:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	583.283217	1164.55188	0.11893	6.9372E-05	4.0406	0.0023568	4.1596	0.0024262	583.285512567563	39.753	0.32132	39.753	39.633	39.954	0	-0.010474	-8.3764E-05	NaN	2.9952	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51797	+		19657	11756	13031	13162							-0.023813150628484436
STPAGEGPWVL	11	Unmodified	_STPAGEGPWVL_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73843478-73843967:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2824096679688	2	557.282389	1112.55022	0.95375	0.00053151	-1.174	-0.00065428	-0.22029	-0.00012277	557.2816243435208	80.798	0.41024	80.798	80.646	81.056	0					28	13	3	0	0	0	0.35043	1	19721	19721		12.241	2.8575	1	183300			19658	6426	13032	13163	26450	26450					-0.001548647649542545
STPDLAANR	9	Unmodified	_STPDLAANR_					0	0	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.7436828613281	2	472.743431	943.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.442	1	27.442	26.942	27.942	0								0	0	0	0.25287	1	3549	3549		8.7454	1.1365	1				19659	3784	13033	13164	26451	26451					-0.001688776303353734
STPDLAANR	9	Unmodified	_STPDLAANR_					0	0	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.7437438964844	2	472.743431	943.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.454	1	27.54	27.04	28.04	0.0867								0	0	0	0.24978	1	3421	3421		9.3831	4.0862	1				19660	3784	13033	13164	26452	26452					-0.001688776303353734
STPSPTVAAL	10	Unmodified	_STPSPTVAAL_					0	0	0			REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.25823974609375	2	472.258382	942.502212	-0.2647	-0.00012501	0.19088	9.0144E-05	-0.073818	-3.4861E-05	472.25846361825853	33.628	0.70039	33.702	33.447	34.148	0.074322					60	28	3	0	0	0	0.38912	1	5271	5271		13.042	1.5478	1	140600	+		19661	11006	13034	13165	26453	26453					0.028660613149895653
STRRNSRPW	9	Unmodified	_STRRNSRPW_					0	0	0			REV__ENST00000216962.8_1_20:25263872-25264788:+|nuORF	REV__ENST00000216962.8_1_20:25263872-25264788:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.3070678710938	2	580.307595	1158.60064	-0.032288	-1.8737E-05	-1.1108	-0.00064462	-1.1431	-0.00066335	580.3070225359908	30.029	0.608	30.029	29.844	30.452	0					58	28	3	0	0	0	0.34646	1	4365	4365		0.6015	0	1	145120	+		19662	11176	13035	13166	26454	26454					0.027681024034109214
STRTTTTPFP	10	Unmodified	_STRTTTTPFP_					0	0	0		ENSG00000143443|ENST00000368926|C1orf56	ENSG00000143443|ENST00000368926|C1orf56	ENSG00000143443|ENST00000368926|C1orf56	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.784912109375	2	554.785296	1107.55604	0.2681	0.00014874	-0.26697	-0.00014811	0.0011295	6.266E-07	554.7852999290006	35.445	2.603	35.445	35.18	37.783	0					215	98	5	0	0	0	0.44727	1	6245	6245		5.2969	0	1	3695500			19663	3161	13036	13167	26455	26455					0.006562337466903045
STSALSAILR	10	Unmodified	_STSALSAILR_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.73089599609375	2	509.798206	1017.58186	0.49706	0.0002534	-0.47719	-0.00024327	0.019872	1.0131E-05	509.79827072236094	55.31	0.24599	55.31	55.166	55.411	0					12	8	2	0	0	0	0.31725	1	11936	11936		7.1017	2.2047	1	60987			19664	982	13037	13168	26456	26456					0.07377127988991106
STSAPDEPLL	10	Unmodified	_STSAPDEPLL_					0	0	0		ENSG00000184304|ENST00000331968|PRKD1;ENST00000468370.5_1_14:30107689-30135322:-|nuORF	ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.259033203125	2	515.258579	1028.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.681	1	65.681	65.181	66.181	0								0	0	0	0.33215	1	15093	15093		9.3831	2.0939	1				19665	4966	13038	13169	26457	26457					-0.010505637558253511
STSAPDEPLL	10	Unmodified	_STSAPDEPLL_					0	0	0		ENSG00000184304|ENST00000331968|PRKD1;ENST00000468370.5_1_14:30107689-30135322:-|nuORF	ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.259033203125	2	515.258579	1028.50261	0.53165	0.00027394	-0.20308	-0.00010464	0.32857	0.0001693	515.2584448004831	65.505	0.42491	65.572	65.393	65.818	0.066872					24	16	2	0	0	0	0.42335	1	14917	14917		9.3831	1.473	1	145940			19666	4966	13038	13169	26458	26458					-0.010505637558253511
STSAVKEKT	9	Unmodified	_STSAVKEKT_					0	0	0		MAP1B|p.S1801L|1|0.16|ENSG00000131711|chr5:72198757-72198757|C/T|missense_variant;ENSG00000131711|ENST00000296755|MAP1B	MAP1B|p.S1801L|1|0.16|ENSG00000131711|chr5:72198757-72198757|C/T|missense_variant	MAP1B|p.S1801L|1|0.16|ENSG00000131711|chr5:72198757-72198757|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.7613830566406	2	475.761289	949.508025	-0.2665	-0.00012679	-0.12611	-5.9998E-05	-0.39261	-0.00018679	475.7612280247036	23.18	0.80245	23.282	23.065	23.867	0.10178					213	77	4	0	0	0	0.28472	1	2313	2313		8.7454	1.1365	1	618610			19667	2541	13039	13170	26459	26459					0.03125159826663548
STSENMFLE	9	Unmodified	_STSENMFLE_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2301635742188	2	529.228965	1056.44338	0.39503	0.00020906	1.7584	0.00093061	2.1535	0.0011397	529.2298278903033	75.607	0.28757	75.607	75.425	75.713	0					14	11	2	0	0	0	0.27332	1	18133	18133		10.074	2.7847	1	328790			19668	2095	13040	13171	26460	26460					-0.08258783041628703
STSETPQPPR	10	Unmodified	_STSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2730712890625	2	550.272552	1098.53055	-0.12186	-6.7056E-05	0.54411	0.00029941	0.42225	0.00023235	550.2727643211866	25.361	0.70925	25.361	24.945	25.654	0					89	55	2	0	0	0	0.43503	2	2891	2891;2936		7.609	4.6137	1	22576			19669	5045	13041	13172	26461;26462	26461					-0.014772407757391193
STSETPQPPR	10	Unmodified	_STSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2725830078125	2	550.272552	1098.53055	0.070373	3.8724E-05	0.27697	0.00015241	0.34735	0.00019113	550.2725851231528	25.171	0.45362	25.267	25.097	25.55	0.096073					57	39	2	0	0	0	0.45945	1	2776	2776		2.9952	0.69251	1	15479			19670	5045	13041	13172	26463	26463					-0.014772407757391193
STSETPQPPR	10	Unmodified	_STSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2174682617188	2	550.272552	1098.53055	0.078495	4.3194E-05	0.68627	0.00037763	0.76476	0.00042083	550.2727328705897	24.988	0.14593	25.084	24.951	25.097	0.096075					19	13	2	0	0	0	0.31803	1	2718	2718		3.2813	0.28607	1	11240			19671	5045	13041	13172	26464	26464					-0.014772407757391193
STSLASSFVTS	11	Unmodified	_STSLASSFVTS_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7693481445312	2	543.769311	1085.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.735	1	20.834	20.334	21.334	0.099499								0	0	0	0.33873	1	1579	1579		1.1933	0	1		+		19672	8124	13042	13173	26465	26465					-0.015271787270876303
STSYFKDF	8	Unmodified	_STSYFKDF_					0	0	0			REV__tr|U7SRU5|U7SRU5_FUSNUPhosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01433PE=4SV=1	REV__tr|U7SRU5|U7SRU5_FUSNUPhosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01433PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7453308105469	2	497.729458	993.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.482	1	32.482	31.982	32.982	0								0	0	0	0.38822	1	5035	5035		2.5775	0.51773	1		+		19673	13138	13043	13174	26466	26466					-0.05262200610422951
STTQTVHNI	9	Unmodified	_STTQTVHNI_					0	0	0			REV__ENSG00000166263|ENST00000376352|STXBP4	REV__ENSG00000166263|ENST00000376352|STXBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7562255859375	2	500.756538	999.498523	-0.11648	-5.8327E-05	-0.00011107	-5.5621E-08	-0.11659	-5.8383E-05	500.75650045124	30.138	0.38539	30.138	29.958	30.343	0					28	17	2	0	0	0	0.33704	1	4345	4345		1.8442	0	1	33553	+		19674	10069	13044	13175	26467	26467					-0.001246084588501617
STTTHYDYHV	10	Unmodified	_STTTHYDYHV_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5154724121094	3	408.515765	1222.52547	0.55551	0.00022694	-2.127	-0.00086891	-1.5715	-0.00064198	408.5148361232453	76.208	0.45332	76.208	76.097	76.55	0					41	19	3	0	0	0	0.45794	1	18307	18307		1.5923	0	1	1208800			19675	13666	13045	13176	26468	26468					-0.07689544638355983
STTTHYDYHV	10	Unmodified	_STTTHYDYHV_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.51519775390625	3	408.515765	1222.52547	0.17424	7.1181E-05	-1.6573	-0.00067702	-1.483	-0.00060584	408.5149118916418	75.864	0.22747	75.908	75.766	75.994	0.044037					34	17	4	0	0	0	0.45627	1	18014	18014		1.7423	0	1	2930200			19676	13666	13045	13176	26469	26469					-0.07689544638355983
STVEEAVATR	10	Unmodified	_STVEEAVATR_					0	0	0		nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	nc|ENSG00000100813|Q9UKV3-3|ACIN1	nc|ENSG00000100813|Q9UKV3-3|ACIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7748413085938	2	531.774928	1061.5353	-0.085	-4.5201E-05	-0.033532	-1.7831E-05	-0.11853	-6.3032E-05	531.7748425057123	31.55	0.40633	31.55	31.347	31.753	0					35	17	3	0	0	0	0.37812	1	4770	4770		14.218	10.342	1	62149			19677	1218	13046	13177	26470	26470					0.006996433670337865
STVEEAVATR	10	Unmodified	_STVEEAVATR_					0	0	0		nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	nc|ENSG00000100813|Q9UKV3-3|ACIN1	nc|ENSG00000100813|Q9UKV3-3|ACIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7749633789062	2	531.774928	1061.5353	0.04215	2.2414E-05	-0.30719	-0.00016336	-0.26504	-0.00014094	531.774708384751	31.489	0.35079	31.563	31.441	31.792	0.073782					31	17	2	0	0	0	0.40338	1	4632	4632		11.518	8.5226	1	39172			19678	1218	13046	13177	26471	26471					0.006996433670337865
STVGGWVSTR	10	Unmodified	_STVGGWVSTR_					0	0	0		ENSG00000018510|ENST00000264167|AGPS;AGPS-MOB4|1|fusion	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2726440429688	2	525.272355	1048.53016	-0.29976	-0.00015746	0.32153	0.00016889	0.021767	1.1434E-05	525.2724425379441	40.598	0.41256	40.598	40.375	40.787	0					19	14	2	0	0	0	0.31705	1	7469	7469		8.4443	4.8478	1	41514			19679	18	13047	13178	26472	26472					0.007833842950731196
STVGGWVSTR	10	Unmodified	_STVGGWVSTR_					0	0	0		ENSG00000018510|ENST00000264167|AGPS;AGPS-MOB4|1|fusion	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.272355	1048.53016	-0.24081	-0.00012649	-0.10494	-5.5124E-05	-0.34575	-0.00018161	525.2724359700549	40.446	0.24842	40.536	40.437	40.685	0.089645	-0.030941	-0.00030102	NaN	8.4443	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40945			19680	18	13047	13178							0.007833842950731196
STVGSAISR	9	Unmodified	_STVGSAISR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.2404479980469	2	439.240524	876.466495	-0.048856	-2.146E-05	0.056772	2.4936E-05	0.0079152	3.4767E-06	439.2404072656754	25.655	0.45332	25.655	25.482	25.936	0					75	34	3	0	0	0	0.12515	2	3013	3013;3048		27.223	14.181	1	115370			19681	1237	13048	13179	26473;26474	26473					0.023320238579913166
STVGSAISR	9	Unmodified	_STVGSAISR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2403869628906	2	439.240524	876.466495	-0.18517	-8.1332E-05	0.21039	9.2414E-05	0.025228	1.1081E-05	439.2404770171392	25.481	0.40823	25.577	25.431	25.839	0.096075					71	33	3	0	0	0	0.24914	1	2877	2877		12.873	4.1272	1	97053			19682	1237	13048	13179	26475	26475					0.023320238579913166
STWESEESL	9	Unmodified	_STWESEESL_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;CHD2|p.K471Nfs*7|1|0.1|ENSG00000173575|chr15:92948985-92949021|AAGAAACAACCTGCATATTTAGGAGGGGAGAATCTGG/-|frameshift_variant;nc|ENSG00000173575|O14647-3|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.5999755859375	2	534.230019	1066.44548	0.47361	0.00025302	0.081924	4.3766E-05	0.55554	0.00029678	534.2299542701417	60.76	0.85354	60.76	60.507	61.361	0					46	30	2	0	0	0	0.23598	1	13567	13567		10.824	0	1	202090			19683	4550	13049	13180	26476	26476					-0.08508031032170038
SVAARAKK	8	Unmodified	_SVAARAKK_					0	0	0			REV__ENSG00000174744|ENST00000359957|BRMS1	REV__ENSG00000174744|ENST00000359957|BRMS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2203674316406	2	415.763969	829.513385	-0.099935	-4.1549E-05	1.5269	0.00063484	1.427	0.0005933	415.7657380292186	48.964	0.14614	49.041	48.93	49.076	0.076603					8	5	2	0	0	0	0.3576	1	9856	9856		2.5775	0	1	21911	+		19684	10356	13050	13181	26477	26477					0.09180928199793925
SVAIAWWH	8	Unmodified	_SVAIAWWH_					0	0	0			REV__ENST00000471550.1_1_7:38247105-38254853:+|nuORF	REV__ENST00000471550.1_1_7:38247105-38254853:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2355651855469	2	485.250695	968.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.802	1	39.89	39.39	40.39	0.088562								0	0	0	0.38822	1	7107	7107		2.5775	0	1		+		19685	12031	13051	13182	26478	26478					0.0013323930846809162
SVAITVAVVD	10	Unmodified	_SVAITVAVVD_					0	0	0		nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2804260253906	2	487.281857	972.549162	0.015637	7.6196E-06	-3.13	-0.0015252	-3.1144	-0.0015176	487.2800367835441	48.843	1.1589	48.843	48.605	49.764	0					78	40	3	0	0	0	0.14584	2	10020	10020;10037		39.95	7.6442	1	236680			19686	5659	13052	13183	26479;26480	26479					0.0617892086613665
SVALALSTDP	10	Unmodified	_SVALALSTDP_					0	0	0			REV__ENST00000437879.6_1_1:201182683-201184240:+|nuORF	REV__ENST00000437879.6_1_1:201182683-201184240:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2782287597656	2	487.263665	972.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.027	1	49.104	48.604	49.604	0.076607								0	0	0	0.32828	1	9886	9886		13.906	2.2658	1		+		19687	11873	13053	13184	26481	26481					0.025420439694244124
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2686462402344	2	453.26875	904.522947	0.087687	3.9746E-05	-0.26592	-0.00012053	-0.17823	-8.0786E-05	453.26848965592734	39.707	0.52406	39.707	39.518	40.042	0					37	17	3	0	0	0	0.22247	1	7233	7233		20.415	0	1	136060			19688	5967	13054	13185	26482	26482					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2686767578125	2	453.26875	904.522947	-0.014975	-6.7879E-06	-0.085905	-3.8938E-05	-0.10088	-4.5726E-05	453.2685573882872	39.607	0.55083	39.695	39.513	40.064	0.088562					38	20	3	0	0	0	0.14444	1	7038	7038		24.991	0	1	122800			19689	5967	13054	13185	26483	26483					0.06686651694667489
SVASTPISQR	10	Unmodified	_SVASTPISQR_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.284912109375	2	523.285463	1044.55637	-0.149	-7.797E-05	-0.59561	-0.00031167	-0.74461	-0.00038964	523.2849989947446	29.106	0.52744	29.106	28.915	29.443	0					71	31	3	0	0	0	0.26772	2	4013	4013;4051		26.021	12.406	1	143070			19690	153	13055	13186	26484;26485	26484					0.03587653466570373
SVASTPISQR	10	Unmodified	_SVASTPISQR_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.284912109375	2	523.285463	1044.55637	-0.19492	-0.000102	-0.36405	-0.0001905	-0.55896	-0.0002925	523.2851116578524	28.996	0.42661	29.074	28.903	29.329	0.078287					68	29	3	0	0	0	0.26772	2	3863	3863;3900		26.021	12.406	1	131820			19691	153	13055	13186	26486;26487	26486					0.03587653466570373
SVAVKEEVL	9	Unmodified	_SVAVKEEVL_					0	0	0		ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.28192138671875	2	487.281857	972.549162	0.20175	9.831E-05	-0.44698	-0.0002178	-0.24522	-0.00011949	487.2817622969246	81.953	0.42542	81.975	81.676	82.102	0.021866					24	14	2	0	0	0	0.14091	1	19865	19865		25.399	1.3787	1	139810			19692	967	13056	13187	26488	26488					0.06178920866148019
SVDETIEHVF	10	Unmodified	_SVDETIEHVF_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.806396484375	2	588.282586	1174.55062	0.51068	0.00030043	3.269	0.0019231	3.7797	0.0022235	588.2841182100472	61.386	0.3666	61.386	61.11	61.477	0					20	12	2	0	0	0	0.29844	1	13752	13752		22.736	0.98964	1	113130			19693	1203	13057	13188	26489	26489					-0.029674898357598067
SVDPQSAPGP	10	Unmodified	_SVDPQSAPGP_					0	0	0			REV__RABEP1|p.S593Kfs*12|1|0.14|ENSG00000029725|chr17:5365219-5365220|-/CGAAGATT|frameshift_variant	REV__RABEP1|p.S593Kfs*12|1|0.14|ENSG00000029725|chr17:5365219-5365220|-/CGAAGATT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7300720214844	2	477.729989	953.445425	-0.32988	-0.00015759	0.13626	6.5096E-05	-0.19362	-9.2498E-05	477.73002872852476	32.593	0.46425	32.667	32.473	32.937	0.07378					39	24	3	0	0	0	0.43214	1	4927	4927		8.1555	0.54658	1	44451	+		19694	8009	13058	13189	26490	26490					-0.03315986241511837
SVDPTPVRF	9	Unmodified	_SVDPTPVRF_					0	0	0			REV__ENSG00000105679|ENST00000222286|GAPDHS	REV__ENSG00000105679|ENST00000222286|GAPDHS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8111572265625	2	509.271824	1016.5291	0.27883	0.000142	-0.91433	-0.00046564	-0.6355	-0.00032364	509.2715427787982	37.948	0.31863	37.948	37.783	38.101	0					12	10	2	0	0	0	0.2446	1	6656	6656		11.64	0.81637	1	14827	+		19695	8553	13059	13190	26491	26491					0.021491699261900976
SVDSTNFKG	9	Unmodified	_SVDSTNFKG_					0	0	0			REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF	REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.73004150390625	2	477.729989	953.445425	-0.3664	-0.00017504	0.31979	0.00015277	-0.046608	-2.2266E-05	477.73005688990867	32.628	0.45638	32.628	32.425	32.881	0					37	22	2	0	0	0	0.20358	1	5079	5079		18.146	1.9972	1	51033	+		19696	9759	13060	13191	26492	26492					-0.03315986241500468
SVDSTNFKG	9	Unmodified	_SVDSTNFKG_					0	0	0			REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF	REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	477.729989	953.445425	-0.3664	-0.00017504	0.31979	0.00015277	-0.046608	-2.2266E-05	477.73005688990867	32.628	0.45638	32.628	32.425	32.881	0	-0.019255	7.794E-05	NaN	18.146	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51033	+		19697	9759	13060	13191							-0.03315986241500468
SVDVEVRVP	9	Unmodified	_SVDVEVRVP_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.27740478515625	2	500.277106	998.53966	-0.069977	-3.5008E-05	0.093103	4.6577E-05	0.023125	1.1569E-05	500.27716278667754	43.063	0.35079	43.152	42.98	43.33	0.089767					31	12	3	0	0	0	0.31496	1	8075	8075		4.756	0.42677	1	73105			19698	3040	13061	13192	26493	26493					0.040331525806209356
SVDVTWSF	8	Unmodified	_SVDVTWSF_					0	0	0		ENST00000564180.1_1_16:68877520-68901131:+|nuORF;ENSG00000103047|ENST00000261778|TANGO6	ENST00000564180.1_1_16:68877520-68901131:+|nuORF	ENST00000564180.1_1_16:68877520-68901131:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2341613769531	2	470.724175	939.433798	0.23231	0.00010935	0.016195	7.6232E-06	0.24851	0.00011698	470.72420178894026	62.534	0.59797	62.534	62.314	62.912	0					33	21	2	0	0	0	0.34579	1	14171	14171		23.148	5.0134	1	145710			19699	1347	13062	13193	26494	26494					-0.03834183264848434
SVETVTLLVAL	11	Unmodified	_SVETVTLLVAL_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;ENST00000520515.5_1_5:133541561-133657575:-|nuORF	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.2794799804688	2	572.844822	1143.67509	0.46082	0.00026398	-0.3139	-0.00017981	0.14692	8.4163E-05	572.8445374678661	91.945	0.45842	91.945	91.678	92.136	0					34	16	3	0	0	0	0.1621	1	23061	23061		53.833	13.883	1	158950			19700	1423	13063	13194	26495	26495					0.10900007651571286
SVETVTLLVAL	11	Unmodified	_SVETVTLLVAL_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;ENST00000520515.5_1_5:133541561-133657575:-|nuORF	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2793579101562	2	572.844822	1143.67509	0.36135	0.000207	-0.15173	-8.6916E-05	0.20962	0.00012008	572.8445557660409	91.927	0.59377	91.963	91.72	92.314	0.036522					29	20	2	0	0	0	0.26021	1	22907	22907		32.786	11.249	1	112730			19701	1423	13063	13194	26496	26496					0.10900007651571286
SVFFLSCSLSL	11	Unmodified	_SVFFLSCSLSL_					0	0	0			REV__ENST00000366481.3_1_1:248040148-248040412:+|nuORF	REV__ENST00000366481.3_1_1:248040148-248040412:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.54156494140625	3	401.542375	1201.6053	0.047035	1.8887E-05	0.37601	0.00015099	0.42305	0.00016987	401.87756363196945	27.229	0.40451	27.229	27.04	27.445	0					36	24	2	0	0	0	0.41369	1	3476	3476		0.40827	0	1	20803	+		19702	11547	13064	13195	26497	26497					0.012558057112983079
SVFPGTKWGVW	11	Unmodified	_SVFPGTKWGVW_					0	0	0		ENST00000418310.5_1_7:73536047-73536155:+|nuORF	ENST00000418310.5_1_7:73536047-73536155:+|nuORF	ENST00000418310.5_1_7:73536047-73536155:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.85687255859375	3	421.888874	1262.64479	0.051921	2.1905E-05	0.17371	7.3286E-05	0.22563	9.5191E-05	422.2226864962844	12.127	0.045079	12.189	12.161	12.206	0.061734					6	5	2	0	0	0	0.4185	1	24	24		0.094841	0	1	5967.2			19703	6438	13065	13196	26498	26498					0.02397693777038512
SVFSGFLLFPD	11	Unmodified	_SVFSGFLLFPD_					0	0	0		ENSG00000159189|ENST00000374640|C1QC	ENSG00000159189|ENST00000374640|C1QC	ENSG00000159189|ENST00000374640|C1QC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.815673828125	2	614.816064	1227.61758	-0.33338	-0.00020497	0.073777	4.5359E-05	-0.25961	-0.00015961	614.8160163540017	105.7	0.40002	105.7	105.49	105.89	0					65	41	2	0	0	0	0.20238	4	27214	27214;27244;27251;27289		29.841	17.6	1	141860			19704	3717	13066	13197	26499;26500;26501;26502	26499					0.012871654459786441
SVFSGFLLFPD	11	Unmodified	_SVFSGFLLFPD_					0	0	0		ENSG00000159189|ENST00000374640|C1QC	ENSG00000159189|ENST00000374640|C1QC	ENSG00000159189|ENST00000374640|C1QC	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.816064	1227.61758	-0.015041	-9.2472E-06	-0.16198	-9.9588E-05	-0.17702	-0.00010884	614.815760980373	105.61	0.35565	105.64	105.47	105.82	0.029739	-0.028642	-0.0001019	NaN	29.841	82	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131940			19705	3717	13066	13197							0.012871654459786441
SVHMFVELNK	10	Unmodified	_SVHMFVELNK_					0	0	0			REV__ENST00000524933.1_1_11:13716477-13732426:+|nuORF	REV__ENST00000524933.1_1_11:13716477-13732426:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8782653808594	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.517	1	26.609	26.109	27.109	0.091507								0	0	0	0.33738	1	3154	3154		1.5923	0	1		+		19706	10865	13067	13198	26503	26503					0.01857743662685607
SVIESPSTNR	10	Unmodified	_SVIESPSTNR_					0	0	0		NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant	NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2799072265625	2	545.280377	1088.5462	-0.12088	-6.5913E-05	2.1863	0.0011921	2.0654	0.0011262	545.2803937146613	29.387	0.35325	29.387	29.155	29.508	0					44	21	3	0	0	0	0.45133	2	4091	4091;4096		4.5289	0.93237	1	22235			19707	4809	13068	13199	26504;26505	26504					0.005470457413366603
SVIESPSTNR	10	Unmodified	_SVIESPSTNR_					0	0	0		NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant	NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.27978515625	2	545.280377	1088.5462	-0.094492	-5.1525E-05	2.9336	0.0015996	2.8391	0.0015481	545.2804353714369	29.231	0.34102	29.309	29.186	29.527	0.078289					44	20	3	0	0	0	0.44727	3	3948	3948;3959;3989		5.2969	1.3525	1	23566			19708	4809	13068	13199	26506;26507;26508	26506					0.005470457413366603
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3068237304688	2	545.306198	1088.59784	0.19588	0.00010682	0.23656	0.000129	0.43244	0.00023581	545.3061939309184	48.72	0.43076	48.72	48.514	48.945	0					29	14	3	0	0	0	0.27736	1	9933	9933		24.991	11.948	1	93472			19709	1887	13069	13200	26509	26509					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3065795898438	2	545.306198	1088.59784	0.19898	0.0001085	-0.10837	-5.9095E-05	0.090607	4.9408E-05	545.3059622477566	48.636	0.43161	48.713	48.468	48.9	0.076607					19	13	2	0	0	0	0.27736	1	9775	9775		24.991	8.8419	1	81241			19710	1887	13069	13200	26510	26510					0.057088342259021374
SVKDLIRQ	8	Unmodified	_SVKDLIRQ_					0	0	0			REV__nc|ENSG00000051341|O75417-2|POLQ	REV__nc|ENSG00000051341|O75417-2|POLQ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7279052734375	2	479.787641	957.56073	-0.45059	-0.00021619	-0.14464	-6.9398E-05	-0.59524	-0.00028559	479.78750827557303	42.689	0.26351	42.779	42.624	42.887	0.089767					14	9	2	0	0	0	0.3576	1	7949	7949		7.2892	0.56607	1	27740	+		19711	8054	13070	13201	26511	26511					0.08025162680144149
SVKEISDIVQR	11	Unmodified	_SVKEISDIVQR_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3601684570312	2	637.359159	1272.70376	-0.35612	-0.00022697	0.43264	0.00027574	0.076519	4.877E-05	637.3593546333201	40.533	0.31496	40.533	40.341	40.656	0					17	10	2	0	0	0	0.38407	2	7440	7440;7470		7.9454	4.3583	1	27126			19712	1115	13071	13202	26512;26513	26512					0.07832125280674518
SVKEQITP	8	Unmodified	_SVKEQITP_					0	0	0			REV__ENST00000467077.1_1_3:142074209-142075845:-|nuORF	REV__ENST00000467077.1_1_3:142074209-142075845:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.25347900390625	2	451.2531	900.491647	-0.111	-5.0091E-05	1.0972	0.00049513	0.98624	0.00044504	451.25341159189617	33.351	0.50394	33.425	33.191	33.695	0.074322					33	19	2	0	0	0	0.3576	1	5165	5165		2.5775	0.51773	1	40695	+		19713	12003	13072	13203	26514	26514					0.037420786605480316
SVKEQITP	8	Unmodified	_SVKEQITP_					0	0	0			REV__ENST00000467077.1_1_3:142074209-142075845:-|nuORF	REV__ENST00000467077.1_1_3:142074209-142075845:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	451.2531	900.491647	0.071892	3.2442E-05	0.95078	0.00042904	1.0227	0.00046148	451.2533873889011	33.409	0.46455	33.409	33.248	33.713	0	-0.0082357	-2.5595E-05	NaN	2.5775	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39205	+		19714	12003	13072	13203							0.037420786605480316
SVKGSPIDA	9	Unmodified	_SVKGSPIDA_					0	0	0			REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.23687744140625	2	437.23745	872.460347	0.63569	0.00027795	-1.6999	-0.00074325	-1.0642	-0.00046531	437.23656814266525	82.616	0.62669	82.616	82.364	82.99	0					42	21	3	0	0	0	0.30397	1	20299	20299		6.2058	0	1	291910	+		19715	13310	13073	13204	26515	26515					0.019015056264606756
SVKGSPIDA	9	Unmodified	_SVKGSPIDA_					0	0	0			REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	437.23745	872.460347	0.17584	7.6884E-05	-1.4204	-0.00062107	-1.2446	-0.00054418	437.2367511242544	82.555	0.87444	82.576	82.319	83.194	0.021744	-0.019721	9.7129E-05	NaN	6.2058	52	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267170	+		19716	13310	13073	13204							0.019015056264606756
SVKHLVYL	8	Unmodified	_SVKHLVYL_					0	0	0		ENST00000400286.2_1_13:86373305-86373452:-|nuORF	ENST00000400286.2_1_13:86373305-86373452:-|nuORF	ENST00000400286.2_1_13:86373305-86373452:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.78759765625	2	479.789653	957.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.807	1	42.807	42.307	43.307	0								0	0	0	0.38822	1	8140	8140		13.508	2.7084	1				19717	6364	13074	13205	26516	26516					0.0842725217385123
SVKLDWFLW	9	Unmodified	_SVKLDWFLW_					0	0	0			REV__ENST00000322716.7_1_3:37028664-37028739:-|nuORF	REV__ENST00000322716.7_1_3:37028664-37028739:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.82275390625	2	597.321317	1192.62808	-0.0035184	-2.1016E-06	-1.2397	-0.0007405	-1.2432	-0.0007426	597.3196205308197	72.45	0.91711	72.506	72.239	73.156	0.055939					92	31	4	0	0	0	0.29105	1	17093	17093		7.9102	0.80843	1	787230	+		19718	11401	13075	13206	26517	26517					0.03947192891064333
SVLALFLYLVK	11	Unmodified	_SVLALFLYLVK_					0	0	0			REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3955688476562	2	633.397025	1264.7795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.72	1	114.72	114.22	115.22	0								0	0	0	0.34212	1	29286	29286		0	0	1		+		19719	11821	13076	13207	26518	26518					0.15769754198913688
SVLARLHR	8	Unmodified	_SVLARLHR_					0	0	0			REV__ENST00000520105.5_1_8:142441153-142441459:+|nuORF	REV__ENST00000520105.5_1_8:142441153-142441459:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.32672119140625	2	476.295968	950.577383	-0.31183	-0.00014852	0.10151	4.835E-05	-0.21032	-0.00010017	476.2959853141365	112.3	0.4017	112.3	112.15	112.55	0					61	43	2	0	0	0	0.35759	1	28824	28824		9.3474	3.587	1	674500	+		19720	12293	13077	13208	26519	26519					0.10011708356739746
SVLARLHR	8	Unmodified	_SVLARLHR_					0	0	0			REV__ENST00000520105.5_1_8:142441153-142441459:+|nuORF	REV__ENST00000520105.5_1_8:142441153-142441459:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.3266906738281	2	476.295968	950.577383	-0.0043004	-2.0483E-06	-0.24576	-0.00011706	-0.25006	-0.0001191	476.2958403222602	112.44	0.11473	112.46	112.4	112.51	0.014595					17	12	2	0	0	0	0.35759	1	28676	28676		9.3474	0	1	262750	+		19721	12293	13077	13208	26520	26520					0.10011708356739746
SVLEDEHQ	8	Unmodified	_SVLEDEHQ_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.72003173828125	2	478.719621	955.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.933	1	24.933	24.433	25.433	0								0	0	0	0.38822	1	2830	2830		2.5775	0	1				19722	4245	13078	13209	26521	26521					-0.05480576621187083
SVLENHHWR	9	Unmodified	_SVLENHHWR_					0	0	0		nc|ENSG00000205268|Q13946-3|PDE7A;ENSG00000171408|ENST00000308191|PDE7B;nc|ENSG00000205268|Q13946-2|PDE7A;ENSG00000205268|ENST00000401827|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.298095703125	2	589.296696	1176.57884	0.27171	0.00016012	2.382	0.0014037	2.6537	0.0015638	589.2983155545879	39.599	0.88888	39.687	39.455	40.343	0.088562					57	34	3	0	0	0	0.33849	1	7132	7132		1.6526	0.17072	1	78412			19723	4434	13079	13210	26522	26522					-0.0023870234515470656
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.2547607421875	2	433.255111	864.49567	0.61475	0.00026634	-0.93481	-0.00040501	-0.32007	-0.00013867	433.255122669078	99.786	1.965	99.786	99.29	101.25	0					252	109	3	0	0	0	0.52502	8	25391	25391;25435;25461;25479;25523;25566;25609;25669		9.3474	0	1	149130000			19724	7563	13080	13211	26523;26524;26525;26526;26527;26528;26529;26530	26523					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.2547912597656	2	433.255111	864.49567	0.36251	0.00015706	-0.981	-0.00042502	-0.61849	-0.00026796	433.25527705085307	99.715	2.0396	99.758	99.251	101.29	0.042831					375	125	5	0	0	0	0.52502	7	25230	25230;25270;25307;25318;25397;25437;25479		9.3474	0	1	158410000			19725	7563	13080	13211	26531;26532;26533;26534;26535;26536;26537	26531					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.88519287109375	2	433.255111	864.49567	0.3109	0.0001347	-0.92393	-0.0004003	-0.61303	-0.0002656	433.25472375797455	101.35	0.30136	101.39	101.29	101.59	0.042656					26	18	2	0	0	0	0.3576	1	25835	25835		5.2307	0	1	154630			19726	7563	13080	13211	26538	26538					0.058001681542691585
SVLLIAVRWLV	11	Unmodified	_SVLLIAVRWLV_					0	0	0		nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENSG00000176915|ENST00000357997|ANKLE2	nc|ENSG00000176915|Q86XL3-2|ANKLE2	nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.907958984375	2	634.908091	1267.80163	-0.16919	-0.00010742	-0.17735	-0.0001126	-0.34655	-0.00022003	634.9081136387858	108.29	0.27859	108.29	108.15	108.43	0					62	37	2	0	0	0	0.41309	2	27911	27911;27938		1.3295	0	1	5486300			19727	4678	13081	13212	26539;26540	26539					0.17843978667337979
SVLRSDSSPAC	11	Unmodified	_SVLRSDSSPAC_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.796142578125	2	561.266413	1120.51827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.35	1	105.35	104.85	105.85	0								0	0	0	0.33939	1	27137	27137		0.96228	0	1				19728	5764	13082	13213	26541	26541					-0.037166005104154465
SVMLELVAL	9	Oxidation (M)	_SVM(Oxidation (M))LELVAL_		SVM(1)LELVAL		SVM(82)LELVAL	0	0	1		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7808532714844	2	495.780636	989.546719	0.89565	0.00044404	-0.41391	-0.00020521	0.48173	0.00023883	495.78040564350437	84.404	0.10237	84.404	84.338	84.441	0					16	10	2	0	0	0	0.0053304	1	20791	20791		81.613	21.224	1	871950			19729	2425	13083	13214	26542	26542		153			0.051527491368347
SVMLELVAL	9	Oxidation (M)	_SVM(Oxidation (M))LELVAL_		SVM(1)LELVAL		SVM(82)LELVAL	0	0	1		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7807922363281	2	495.780636	989.546719	0.90795	0.00045014	-0.40951	-0.00020303	0.49844	0.00024712	495.7802830689285	84.494	1.0189	84.494	84.441	85.459	0					72	44	3	0	0	0	0.0053304	3	20838	20838;20881;20934		81.613	21.224	1	865060			19730	2425	13083	13214	26543;26544;26545	26543		153			0.051527491368347
SVMLELVAL	9	Oxidation (M)	_SVM(Oxidation (M))LELVAL_		SVM(1)LELVAL		SVM(93)LELVAL	0	0	1		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7811584472656	2	495.780636	989.546719	0.60125	0.00029809	-0.16801	-8.3294E-05	0.43324	0.00021479	495.7804781152375	84.51	0.94479	84.533	84.038	84.983	0.023125					82	57	2	0	0	0	0.004452	4	20642	20642;20684;20724;20768		92.822	29.259	1	1346800			19731	2425	13083	13214	26546;26547;26548;26549	26546		153			0.051527491368347
SVMLELVAL	9	Unmodified	_SVMLELVAL_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7834167480469	2	487.783179	973.551804	0.26006	0.00012685	0.29346	0.00014315	0.55352	0.00027	487.7830029201072	91.424	0.2863	91.424	91.297	91.584	0					19	10	2	0	0	0	0.0087214	1	22936	22936		71.134	17.558	1	223560			19732	2425	13083	13215	26550	26550					0.06397052999443531
SVMLELVAL	9	Unmodified	_SVMLELVAL_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7830810546875	2	487.783179	973.551804	0.07803	3.8062E-05	0.19996	9.7536E-05	0.27799	0.0001356	487.7831706366167	91.412	0.3581	91.447	91.308	91.666	0.035446					20	12	2	0	0	0	0.021119	1	22783	22783		57.471	3.8958	1	202240			19733	2425	13083	13215	26551	26551					0.06397052999443531
SVMNPKPSSW	10	Unmodified	_SVMNPKPSSW_					0	0	0		WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant;ENSG00000018408|ENST00000360632|WWTR1	WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant	WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.27685546875	2	566.776416	1131.53828	-0.02945	-1.6692E-05	-1.1024	-0.00062483	-1.1319	-0.00064152	567.2779056912769	105.92	0.29305	105.92	105.74	106.03	0					35	27	2	0	0	0	0.43503	1	27291	27291		7.609	0.31972	1	76320			19734	465	13084	13216	26552	26552					-0.02222804779762555
SVNDNLKPERG	11	Unmodified	_SVNDNLKPERG_					0	0	0			REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.3193359375	2	614.817658	1227.62076	-0.25437	-0.00015639	0.76829	0.00047236	0.51392	0.00031597	614.8180906532131	35.766	0.46047	35.766	35.561	36.022	0					35	17	3	0	0	0	0.37393	2	6002	6002;6045		9.544	1.3884	1	70831	+		19735	8855	13085	13217	26553;26554	26553					0.016058085526992727
SVNDNLKPERG	11	Unmodified	_SVNDNLKPERG_					0	0	0			REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.3193359375	2	614.817658	1227.62076	-0.25437	-0.00015639	0.76829	0.00047236	0.51392	0.00031597	614.8180906532131	35.766	0.46047	35.766	35.561	36.022	0					35	17	3	0	0	0	0.31013	1	6002	6002		9.544	1.3884	1	70831	+		19736	8855	13085	13217	26555	26555					0.016058085526992727
SVNDNLKPERG	11	Unmodified	_SVNDNLKPERG_					0	0	0			REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.8179931640625	2	614.817658	1227.62076	-0.16049	-9.8671E-05	0.53817	0.00033087	0.37768	0.0002322	614.8179489592407	35.692	0.42061	35.771	35.569	35.99	0.078831					27	15	3	0	0	0	0.37393	1	5871	5871		9.544	0.79857	1	74990	+		19737	8855	13085	13217	26556	26556					0.016058085526992727
SVNDNLKPERG	11	Unmodified	_SVNDNLKPERG_					0	0	0			REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.817658	1227.62076	-0.16049	-9.8671E-05	0.53817	0.00033087	0.37768	0.0002322	614.8179489592407	35.692	0.42061	35.771	35.569	35.99	0.078831	0.0025842	-0.00010999	NaN	9.544	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74990	+		19738	8855	13085	13217							0.016058085526992727
SVNELIYKR	9	Unmodified	_SVNELIYKR_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000444633.1_1_10:100807788-100807923:+|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.765869140625	2	561.319306	1120.62406	0.23174	0.00013008	-1.2891	-0.0007236	-1.0574	-0.00059352	561.3183691223917	35.258	0.28413	35.337	35.199	35.483	0.078827					20	11	2	0	0	0	0.25376	1	5744	5744		6.2058	2.2614	1	31525			19739	3334	13086	13218	26557	26557					0.06857103397373976
SVPEWFMS	8	Unmodified	_SVPEWFMS_					0	0	0		ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	ENSG00000115970|ENST00000405975|THADA	ENSG00000115970|ENST00000405975|THADA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.76959228515625	2	491.720578	981.426604	-0.2369	-0.00011649	3.7821	0.0018598	3.5452	0.0017433	491.722219200941	40.541	0.49931	40.541	40.237	40.736	0					32	17	3	0	0	0	0.3576	1	7497	7497		8.5933	1.304	1	24317			19740	1932	13087	13219	26558	26558					-0.06485239136918608
SVPEWFMS	8	Unmodified	_SVPEWFMS_					0	0	0		ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	ENSG00000115970|ENST00000405975|THADA	ENSG00000115970|ENST00000405975|THADA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.76953125	2	491.720578	981.426604	-0.12059	-5.9294E-05	2.996	0.0014732	2.8754	0.0014139	491.7220076355076	40.463	0.48663	40.553	40.257	40.743	0.089645					21	17	2	0	0	0	0.3576	1	7290	7290		8.5933	1.304	1	26600			19741	1932	13087	13219	26559	26559					-0.06485239136918608
SVPLRHKE	8	Unmodified	_SVPLRHKE_					0	0	0			REV__ENSG00000162344|ENST00000294312|FGF19	REV__ENSG00000162344|ENST00000294312|FGF19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2787780761719	2	483.279983	964.545414	-0.07554	-3.6507E-05	-2.2664	-0.0010953	-2.3419	-0.0011318	483.27883834982845	89.978	0.37916	89.978	89.739	90.118	0					24	14	2	0	0	0	0.53614	1	22460	22460		3.9444	1.6417	1	296620	+		19742	9883	13088	13220	26560	26560					0.06172295882936396
SVPTLPDDI	9	Unmodified	_SVPTLPDDI_					0	0	0		CON__P00978	CON__P00978	CON__P00978	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.75042724609375	2	478.75039	955.486227	0.24841	0.00011893	-0.0097593	-4.6723E-06	0.23865	0.00011426	478.75028004468123	71.087	0.4453	71.146	70.933	71.378	0.058578					31	15	3	0	0	0	0.32112	1	16638	16638		3.9444	0	1	198640		+	19743	212	13089	13221	26561	26561					0.006703550781026024
SVPWPEEL	8	Unmodified	_SVPWPEEL_					0	0	0		ENST00000440309.5_1_2:219537025-219537529:+|nuORF	ENST00000440309.5_1_2:219537025-219537529:+|nuORF	ENST00000440309.5_1_2:219537025-219537529:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2659912109375	2	478.739825	955.465098	-0.1193	-5.7112E-05	0.12401	5.9367E-05	0.0047095	2.2546E-06	478.739808259135	71.922	0.59119	71.978	71.705	72.296	0.055939					22	20	2	0	0	0	0.3576	1	16874	16874		8.5933	0	1	95911			19744	6522	13090	13222	26562	26562					-0.01441610230756396
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF	ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.8108520507812	2	524.811116	1047.60768	0.13889	7.2892E-05	-0.47451	-0.00024903	-0.33562	-0.00017614	524.8107151886952	51.31	0.4754	51.31	51.152	51.628	0					21	15	2	0	0	0	0.077529	1	10725	10725		55.235	11.462	1	100460			19745	345	13091	13223	26563	26563					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5;ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF	ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.81103515625	2	524.811116	1047.60768	0.16316	8.5627E-05	-0.0063179	-3.3157E-06	0.15684	8.2311E-05	524.8110031713238	51.336	0.37584	51.406	51.18	51.556	0.069874					21	14	2	0	0	0	0.15837	1	10580	10580		34.932	8.6639	1	90146			19746	345	13091	13223	26564	26564					0.08578022231267823
SVRRRILKEL	10	Unmodified	_SVRRRILKEL_					0	0	0			REV__nc|ENSG00000274391|P56180-4|TPTE	REV__nc|ENSG00000274391|P56180-4|TPTE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.875732421875	2	635.409321	1268.80409	0.24244	0.00015405	-3.2665	-0.0020756	-3.0241	-0.0019215	635.407585191005	108.19	0.054764	108.22	108.18	108.24	0.022224					8	6	2	0	0	0	0.31838	1	27691	27691		1.4819	0	1	2369300	+		19747	11133	13092	13224	26565	26565					0.18043827125006828
SVRSTKHF	8	Unmodified	_SVRSTKHF_					0	0	0			REV__PTCHD1|p.Q262H|1|0.17|ENSG00000165186|chrX:23380025-23380025|G/T|missense_variant	REV__PTCHD1|p.Q262H|1|0.17|ENSG00000165186|chrX:23380025-23380025|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.716064453125	2	481.264333	960.514114	0.074471	3.584E-05	-1.7685	-0.0008511	-1.694	-0.00081526	481.2634339651268	38.323	0.52258	38.323	38.017	38.539	0					27	17	2	0	0	0	0.3576	1	6724	6724		5.7604	0	1	47960	+		19748	12966	13093	13225	26566	26566					0.03227722848839676
SVRSTKHF	8	Unmodified	_SVRSTKHF_					0	0	0			REV__PTCHD1|p.Q262H|1|0.17|ENSG00000165186|chrX:23380025-23380025|G/T|missense_variant	REV__PTCHD1|p.Q262H|1|0.17|ENSG00000165186|chrX:23380025-23380025|G/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	481.264333	960.514114	0.079778	3.8394E-05	-1.6582	-0.00079805	-1.5785	-0.00075965	481.2637833635682	38.171	0.38806	38.258	38.047	38.435	0.08688	-0.03235	7.4173E-05	NaN	5.7604	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33585	+		19749	12966	13093	13225							0.03227722848839676
SVSAVLGARR	10	Unmodified	_SVSAVLGARR_					0	0	0		ENST00000243918.9_1_20:43991701-43991908:+|nuORF	ENST00000243918.9_1_20:43991701-43991908:+|nuORF	ENST00000243918.9_1_20:43991701-43991908:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.30389404296875	2	508.30399	1014.59343	-0.18708	-9.5095E-05	0.64174	0.0003262	0.45466	0.0002311	508.30435212728526	28.89	0.49739	28.89	28.718	29.215	0					62	30	3	0	0	0	0.31731	1	3968	3968		6.2058	1.4498	1	65757			19750	5829	13094	13226	26567	26567					0.08671369803005291
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.2559814453125	2	471.256174	940.497795	0.00019829	9.3445E-08	-0.061149	-2.8817E-05	-0.060951	-2.8724E-05	471.25604863287145	36.327	0.6994	36.327	36.077	36.776	0					58	26	3	0	0	0	0.013982	2	6198	6198;6244		62.573	42.119	1	222250			19751	4149	13095	13227	26568;26569	26568					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2559814453125	2	471.256174	940.497795	-0.058378	-2.7511E-05	-0.047884	-2.2566E-05	-0.10626	-5.0077E-05	471.25605278890424	36.25	0.68377	36.332	36.081	36.765	0.081715					65	27	3	0	0	0	0.031665	1	6084	6084		49.933	34.086	1	172170			19752	4149	13095	13227	26570	26570					0.025165968920987325
SVSEVHPSRL	10	Unmodified	_SVSEVHPSRL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7987060546875	2	555.798737	1109.58292	0.016001	8.8933E-06	0.23994	0.00013336	0.25594	0.00014225	555.7988493739064	28.179	0.32497	28.179	28.009	28.334	0					33	15	3	0	0	0	0.44021	1	3780	3780		6.6304	3.8952	1	73685			19753	1903	13096	13228	26571	26571					0.03251342357907561
SVSEVHPSRL	10	Unmodified	_SVSEVHPSRL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7985229492188	2	555.798737	1109.58292	0.13328	7.4078E-05	-0.086279	-4.7954E-05	0.047004	2.6125E-05	555.7986526519343	28.082	0.52812	28.164	27.984	28.512	0.082132					39	31	2	0	0	0	0.44021	2	3585	3585;3627		6.6304	3.8952	1	58852			19754	1903	13096	13228	26572;26573	26572					0.03251342357907561
SVSFSPLFIFQ	11	Unmodified	_SVSFSPLFIFQ_					0	0	0		ENST00000548283.6_1_12:112373822-112373960:-|nuORF	ENST00000548283.6_1_12:112373822-112373960:-|nuORF	ENST00000548283.6_1_12:112373822-112373960:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.336669921875	2	636.337164	1270.65977	0.18138	0.00011542	0.20432	0.00013002	0.38571	0.00024544	636.3372067771978	102.2	0.3933	102.2	102.01	102.4	0					45	27	2	0	0	0	0.38777	1	26226	26226		7.1017	1.3699	1	97464			19755	7085	13097	13229	26574	26574					0.035271408543621874
SVSFSPLFIFQ	11	Unmodified	_SVSFSPLFIFQ_					0	0	0		ENST00000548283.6_1_12:112373822-112373960:-|nuORF	ENST00000548283.6_1_12:112373822-112373960:-|nuORF	ENST00000548283.6_1_12:112373822-112373960:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.3357543945312	2	636.337164	1270.65977	0.38575	0.00024547	0.033178	2.1112E-05	0.41893	0.00026658	636.8386263538466	102.17	0.35971	102.21	102.02	102.38	0.042656					38	28	2	0	0	0	0.38777	1	26012	26012		7.1017	1.3699	1	99037			19756	7085	13097	13229	26575	26575					0.035271408543621874
SVSHGEAAVI	10	Unmodified	_SVSHGEAAVI_					0	0	0		nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.24|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.25311279296875	2	485.253631	968.49271	-0.82819	-0.00040188	-0.19491	-9.4578E-05	-1.0231	-0.00049646	485.25344417042817	41.95	0.92001	41.95	41.679	42.599	0					65	31	3	0	0	0	0.41688	1	7955	7955		10.074	0	1	498610			19757	742	13098	13230	26576	26576					0.007202930294738508
SVSHPFSVN	9	Unmodified	_SVSHPFSVN_					0	0	0			REV__nc|ENSG00000100987|Q9NZR4-2|VSX1	REV__nc|ENSG00000100987|Q9NZR4-2|VSX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.24066162109375	2	487.240524	972.466495	0.13704	6.677E-05	0.15086	7.3505E-05	0.2879	0.00014027	487.2405762391811	56.14	0.65255	56.14	55.948	56.6	0					48	23	3	0	0	0	0.074645	3	12172	12172;12223;12285		37.974	12.983	1	751690	+		19758	12765	13099	13231	26577;26578;26579	26577					-0.020839761419892966
SVSHPFSVN	9	Unmodified	_SVSHPFSVN_					0	0	0			REV__nc|ENSG00000100987|Q9NZR4-2|VSX1	REV__nc|ENSG00000100987|Q9NZR4-2|VSX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2412414550781	2	487.240524	972.466495	0.047893	2.3336E-05	0.56794	0.00027672	0.61584	0.00030006	487.2406889769922	56.102	0.78641	56.169	55.897	56.683	0.066452					59	29	3	0	0	0	0.074645	2	12012	12012;12061		37.974	16.437	1	663340	+		19759	12765	13099	13231	26580;26581	26580					-0.020839761419892966
SVSHPFSVN	9	Unmodified	_SVSHPFSVN_					0	0	0			REV__nc|ENSG00000100987|Q9NZR4-2|VSX1	REV__nc|ENSG00000100987|Q9NZR4-2|VSX1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	487.240524	972.466495	0.13704	6.677E-05	0.15086	7.3505E-05	0.2879	0.00014027	487.2405762391811	56.14	0.65255	56.14	55.948	56.6	0	-0.014119	-0.00015671	NaN	37.974	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	751690	+		19760	12765	13099	13231							-0.020839761419892966
SVSHPFSVN	9	Unmodified	_SVSHPFSVN_					0	0	0			REV__nc|ENSG00000100987|Q9NZR4-2|VSX1	REV__nc|ENSG00000100987|Q9NZR4-2|VSX1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	487.240524	972.466495	0.047893	2.3336E-05	0.56794	0.00027672	0.61584	0.00030006	487.2406889769922	56.102	0.78641	56.169	55.897	56.683	0.066452	0.014119	0.00024973	NaN	37.974	59	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	663340	+		19761	12765	13099	13231							-0.020839761419892966
SVSHVSAF	8	Unmodified	_SVSHVSAF_					0	0	0			REV__ENST00000489675.1_1_1:54387326-54394129:-|nuORF	REV__ENST00000489675.1_1_1:54387326-54394129:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.2196044921875	2	417.211235	832.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.811	1	62.883	62.383	63.383	0.072701								0	0	0	0.38822	1	14075	14075		2.5775	0	1		+		19762	8242	13100	13232	26582	26582					-0.014990327164809969
SVSKNPSYI	9	Unmodified	_SVSKNPSYI_					0	0	0		ENST00000476011.1_1_3:185330354-185331220:+|nuORF;ENST00000473760.5_1_3:185316772-185331220:+|nuORF	ENST00000476011.1_1_3:185330354-185331220:+|nuORF	ENST00000476011.1_1_3:185330354-185331220:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.256591796875	2	497.763832	993.513111	0.58464	0.00029101	-0.88344	-0.00043974	-0.2988	-0.00014873	497.76346957604494	55.451	0.46442	55.451	55.318	55.782	0					18	15	2	0	0	0	0.25644	1	11990	11990		3.9444	1.0552	1	67471			19763	6692	13101	13233	26583	26583					0.01609463689283075
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7816467285156	2	473.782025	945.549496	-0.31578	-0.00014961	0.2479	0.00011745	-0.067883	-3.2162E-05	473.7821469049817	33.377	0.45631	33.377	33.2	33.656	0					40	16	4	0	0	0	0.2359	1	5282	5282		14.405	2.9107	1	91247			19764	969	13102	13234	26584	26584					0.07454340585991304
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.78216552734375	2	473.782025	945.549496	-0.2963	-0.00014038	0.34426	0.0001631	0.047958	2.2722E-05	473.7821493538011	33.351	0.424	33.425	33.209	33.633	0.074322					39	16	3	0	0	0	0.20966	1	5158	5158		17.443	8.6972	1	78676			19765	969	13102	13234	26585	26585					0.07454340585991304
SVSPVVHVR	9	Unmodified	_SVSPVVHVR_					0	0	0		nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL;nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2872619628906	2	490.287808	978.561064	-0.18736	-9.1863E-05	-0.37088	-0.00018184	-0.55824	-0.0002737	490.2875089675966	28.565	0.39169	28.565	28.463	28.855	0					22	17	2	0	0	0	0.32375	1	3894	3894		3.5965	1.5367	1	21551			19766	7519	13103	13235	26586	26586					0.07092582399991443
SVSSHFVGF	9	Unmodified	_SVSSHFVGF_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.76654052734375	2	483.737617	965.460681	-0.097299	-4.7067E-05	0.22658	0.00010961	0.12928	6.254E-05	483.7376985400891	51.877	0.30048	51.877	51.774	52.075	0					17	10	2	0	0	0	0.2298	1	10903	10903		16.942	0	1	52911			19767	1418	13104	13236	26587	26587					-0.023430746536632796
SVSSLISGR	9	Unmodified	_SVSSLISGR_					0	0	0		ENSG00000107816|ENST00000454422|LZTS2;ENST00000489526.1_1_10:102762295-102762823:+|nuORF;LZTS2|p.S206Lfs*96|1|0.23|ENSG00000107816|chr10:101003714-101003718|AGTGG/-|frameshift_variant	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.8802795410156	2	453.256174	904.497795	-0.15624	-7.0818E-05	0.47283	0.00021431	0.31659	0.0001435	453.25642757211045	40.588	0.35126	40.588	40.408	40.759	0					19	12	2	0	0	0	0.24533	1	7480	7480		8.1555	0	1	30775			19768	1567	13105	13237	26588	26588					0.0417259689210141
SVSSSSYRR	9	Unmodified	_SVSSSSYRR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7593383789062	2	514.759612	1027.50467	-0.33414	-0.000172	-0.12479	-6.4235E-05	-0.45893	-0.00023624	514.7595572702468	16.807	0.2655	16.807	16.665	16.931	0					72	32	3	0	0	0	0.27332	1	808	808		10.074	0	1	51987			19769	494	13106	13238	26589	26589					-0.007980902273402535
SVSSSSYRR	9	Unmodified	_SVSSSSYRR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.759521484375	2	514.759612	1027.50467	0.25214	0.00012979	-0.32346	-0.00016651	-0.071322	-3.6714E-05	514.7593744563437	16.776	0.25081	16.854	16.743	16.994	0.077806					69	31	3	0	0	0	0.32375	1	736	736		3.5965	1.7523	1	53567			19770	494	13106	13238	26590	26590					-0.007980902273402535
SVTALAVSR	9	Unmodified	_SVTALAVSR_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2663879394531	2	452.266542	902.51853	0.3247	0.00014685	-0.54452	-0.00024627	-0.21982	-9.9417E-05	452.2662536384727	36.596	0.34889	36.596	36.402	36.751	0					20	12	2	0	0	0	0.26705	1	6273	6273		10.8	5.9025	1	36751			19771	2540	13107	13239	26591	26591					0.06337187271753919
SVTALAVSR	9	Unmodified	_SVTALAVSR_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.2666320800781	2	452.266542	902.51853	0.1215	5.4952E-05	-0.20418	-9.2342E-05	-0.082672	-3.739E-05	452.26638245893696	36.451	0.44831	36.533	36.365	36.813	0.081715					24	18	2	0	0	0	0.20162	1	6117	6117		18.373	8.2992	1	32620			19772	2540	13107	13239	26592	26592					0.06337187271753919
SVTMLFSQF	9	Unmodified	_SVTMLFSQF_					0	0	0		ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2636108398438	2	530.26261	1058.51067	0.84109	0.000446	0.67069	0.00035564	1.5118	0.00080164	530.2628906238756	80.356	0.50593	80.356	80.14	80.646	0					30	17	2	0	0	0	0.19398	1	19589	19589		19.257	0	1	349310			19773	6445	13108	13240	26593	26593					-0.016247080400262348
SVTYFIIFAFF	11	Unmodified	_SVTYFIIFAFF_					0	0	0			REV__ENST00000228434.7_1_12:9905371-9905509:-|nuORF	REV__ENST00000228434.7_1_12:9905371-9905509:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2297668457031	3	452.240914	1353.70091	0.034311	1.5517E-05	-0.19276	-8.7176E-05	-0.15845	-7.1659E-05	452.24102039078	32.977	0.80156	32.977	32.826	33.628	0					32	20	2	0	0	0	0.31097	1	5330	5330		1.3296	0	1	25507	+		19774	11189	13109	13241	26594	26594					0.03820901893845985
SVVAVFVR	8	Unmodified	_SVVAVFVR_					0	0	0		ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant	ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant	ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.7699279785156	2	438.76872	875.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.83	1	109.83	109.33	110.33	0								0	0	0	0.38822	1	28249	28249		5.2307	0	1				19775	7361	13110	13242	26595	26595					0.0801469648533839
SVVEEMLC	8	Unmodified	_SVVEEMLC_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.8670349121094	2	455.206447	908.39834	-0.07583	-3.4518E-05	-0.30728	-0.00013988	-0.38311	-0.00017439	455.2062000308211	25.701	0.29426	25.701	25.587	25.881	0					33	22	2	0	0	0	0.3576	1	3042	3042		0.69038	0	1	19339	+		19776	10682	13111	13243	26596	26596					-0.059523051085420775
SVVGFLSQR	9	Unmodified	_SVVGFLSQR_					0	0	0		nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5;ENST00000553943.1_1_14:69616197-69619695:-|nuORF	nc|ENSG00000139990|Q96JK2-3|DCAF5	nc|ENSG00000139990|Q96JK2-3|DCAF5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.763671875	2	496.779816	991.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.961	1	51.961	51.461	52.461	0								0	0	0	0.21929	1	10909	10909		15.248	4.134	1				19777	2994	13112	13244	26597	26597					0.0489687616310448
SVVLWAVAL	9	Unmodified	_SVVLWAVAL_					0	0	0		ENSG00000167769|ENST00000301452|ACER1	ENSG00000167769|ENST00000301452|ACER1	ENSG00000167769|ENST00000301452|ACER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2919921875	2	479.292028	956.569503	0.11319	5.4251E-05	0.23101	0.00011072	0.3442	0.00016497	479.29211521565713	94.593	0.49527	94.593	94.315	94.811	0					44	19	3	0	0	0	0.17247	2	23886	23886;23941		21.747	0	1	141450			19778	4230	13113	13245	26598;26599	26598					0.0894813631659872
SVVQAGRAAL	10	Unmodified	_SVVQAGRAAL_					0	0	0			REV__ENSG00000113205|ENST00000231130|PCDHB3	REV__ENSG00000113205|ENST00000231130|PCDHB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2851867675781	2	486.285266	970.555979	-0.19989	-9.7205E-05	-0.27597	-0.0001342	-0.47586	-0.0002314	486.28498534449864	34.235	0.30416	34.235	34.091	34.395	0					19	12	2	0	0	0	0.44496	1	5563	5563		5.7319	0	1	24849	+		19779	8734	13114	13246	26600	26600					0.0695227853735787
SVVQAGRAAL	10	Unmodified	_SVVQAGRAAL_					0	0	0			REV__ENSG00000113205|ENST00000231130|PCDHB3	REV__ENSG00000113205|ENST00000231130|PCDHB3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	486.285266	970.555979	-0.15577	-7.5748E-05	-0.25402	-0.00012352	-0.40978	-0.00019927	486.28489081142385	34.219	0.2752	34.295	34.15	34.425	0.076244	0.03023	1.6436E-05	NaN	5.7319	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21158	+		19780	8734	13114	13246							0.0695227853735787
SVVSLFYGAI	10	Unmodified	_SVVSLFYGAI_					0	0	0		ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2918701171875	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.089	1	98.089	97.589	98.589	0								0	0	0	0.33738	1	24965	24965		3.2813	0	1				19781	5149	13115	13247	26601	26601					0.044795112457904906
SVVSLFYGAI	10	Unmodified	_SVVSLFYGAI_					0	0	0		ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2909545898438	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.37	1	98.37	97.87	98.87	0								0	0	0	0.33738	1	25050	25050		3.2813	0.97858	1				19782	5149	13115	13247	26602	26602					0.044795112457904906
SVVTSSRAI	9	Unmodified	_SVVTSSRAI_					0	0	0		POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7294006347656	2	460.263999	918.513445	0.056405	2.5961E-05	-0.31391	-0.00014448	-0.2575	-0.00011852	460.2638895076076	33.563	0.29779	33.563	33.303	33.601	0					14	10	2	0	0	0	0.25699	1	5348	5348		3.5965	0	1	14520			19783	7671	13116	13248	26603	26603					0.050928834091337194
SVYSREVYR	9	Unmodified	_SVYSREVYR_					0	0	0			REV__ENST00000524833.5_1_11:107992333-108005114:+|nuORF	REV__ENST00000524833.5_1_11:107992333-108005114:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2940063476562	2	579.798737	1157.58292	0.70434	0.00040838	-1.7705	-0.0010265	-1.0661	-0.00061814	580.2986597624009	47.81	0.34902	47.89	47.685	48.034	0.080029					16	12	2	0	0	0	0.259	1	9530	9530		1.6526	0	1	82540	+		19784	8191	13117	13249	26604	26604					0.010433423579115697
SWCGHSCA	8	Unmodified	_SWCGHSCA_					0	0	0			REV__ENST00000598660.1_1_19:18723732-18729158:+|nuORF	REV__ENST00000598660.1_1_19:18723732-18729158:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.1814880371094	2	425.652173	849.289793	-0.13292	-5.6577E-05	-2.4779	-0.0010547	-2.6109	-0.0011113	425.6510972567101	33.814	0.18332	33.888	33.74	33.923	0.074322					13	8	2	0	0	0	0.3576	1	5286	5286		0	0	1	13109	+		19785	8554	13118	13250	26605	26605					-0.14088051568307947
SWDTLHLSW	9	Unmodified	_SWDTLHLSW_					0	0	0			REV__ENST00000495270.1_1_9:130697757-130697907:-|nuORF	REV__ENST00000495270.1_1_9:130697757-130697907:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3739624023438	2	572.774731	1143.53491	-0.10134	-5.8044E-05	0.75052	0.00042988	0.64918	0.00037184	572.7754299589283	58.538	0.71683	58.538	58.293	59.01	0					49	24	3	0	0	0	0.21603	1	12977	12977		20.454	2.3186	1	169110	+		19786	12178	13119	13251	26606	26606					-0.03111731562148634
SWDTLHLSW	9	Unmodified	_SWDTLHLSW_					0	0	0			REV__ENST00000495270.1_1_9:130697757-130697907:-|nuORF	REV__ENST00000495270.1_1_9:130697757-130697907:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.775634765625	2	572.774731	1143.53491	0.18611	0.0001066	0.71301	0.0004084	0.89913	0.000515	572.7754052456321	58.52	0.75853	58.59	58.261	59.02	0.070477					55	26	3	0	0	0	0.23975	1	12740	12740		14.838	14.838	1	140600	+		19787	12178	13119	13251	26607	26607					-0.03111731562148634
SWEFGLERIF	10	Unmodified	_SWEFGLERIF_					0	0	0			REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.7556762695312	2	642.324588	1282.63462	0.7633	0.00049028	1.5735	0.0010107	2.3368	0.001501	642.3254998734625	80.308	0.17519	80.308	80.228	80.403	0					8	5	2	0	0	0	0.3016	1	19553	19553		21.537	1.1224	1	74181	+		19788	9343	13120	13252	26608	26608					0.004610860518141635
SWFPDTLPGI	10	Unmodified	_SWFPDTLPGI_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000546534.1_1_12:46325244-46326951:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.787353515625	2	566.787307	1131.56006	0.53537	0.00030344	1.308	0.00074134	1.8433	0.0010448	566.7871567110274	92.72	0.54386	92.72	92.487	93.031	0					56	20	4	0	0	0	0.032065	1	23330	23330		62.573	34.399	1	299110			19789	2959	13121	13253	26609	26609					-0.0004567675957787287
SWFPDTLPGI	10	Unmodified	_SWFPDTLPGI_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000546534.1_1_12:46325244-46326951:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7874145507812	2	566.787307	1131.56006	0.52695	0.00029867	0.027465	1.5567E-05	0.55441	0.00031423	566.7871810812255	92.686	0.55154	92.722	92.475	93.027	0.036522					36	19	3	0	0	0	0.032065	1	23168	23168		62.573	45.13	1	240710			19790	2959	13121	13253	26610	26610					-0.0004567675957787287
SWFTCTGAK	9	Unmodified	_SWFTCTGAK_					0	0	0		nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.72967529296875	2	500.731477	999.448402	-0.16151	-8.0872E-05	-3.5078	-0.0017565	-3.6693	-0.0018373	500.72962766602615	26.61	0.23839	26.61	26.455	26.694	0					17	14	2	0	0	0	0.34754	1	3318	3318		0.45834	0	1	13922			19791	7609	13122	13254	26611	26611					-0.051344343883556576
SWFYIFVVF	9	Unmodified	_SWFYIFVVF_					0	0	0			REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|92	REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|92	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7687377929688	2	604.312961	1206.61137	0.644	0.00038918	-2.6012	-0.0015719	-1.9572	-0.0011828	604.8128604402327	69.764	0.39772	69.824	69.667	70.065	0.060562					24	15	2	0	0	0	0.25051	1	16152	16152		7.9102	1.187	1	153680	+		19792	7798	13123	13255	26612	26612					0.016326920051142224
SWFYIFVVF	9	Unmodified	_SWFYIFVVF_					0	0	0			REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|92	REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|92	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	604.312961	1206.61137	0.74338	0.00044923	-2.3882	-0.0014432	-1.6448	-0.00099397	604.3115237667243	69.838	0.31813	69.838	69.672	69.991	0	0.0065316	0.00013045	NaN	7.9102	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138260	+		19793	7798	13123	13255							0.016326920051142224
SWGRNKSQW	9	Unmodified	_SWGRNKSQW_					0	0	0		LTR7Y_dup215|chr17:11976514-11976947:+|3.240339189048157|0.4721094976596665|2.78|496.0|28|3|anti-sense	LTR7Y_dup215|chr17:11976514-11976947:+|3.240339189048157|0.4721094976596665|2.78|496.0|28|3|anti-sense	LTR7Y_dup215|chr17:11976514-11976947:+|3.240339189048157|0.4721094976596665|2.78|496.0|28|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7726440429688	2	574.783422	1147.55229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.386	1	53.386	52.886	53.886	0								0	0	0	0.20792	1	11343	11343		16.942	2.104	1				19794	7424	13124	13256	26613	26613					-0.015583912364945718
SWHPKRKEI	9	Unmodified	_SWHPKRKEI_					0	0	0		ENST00000577538.5_1_18:72347588-72589173:+|nuORF	ENST00000577538.5_1_18:72347588-72589173:+|nuORF	ENST00000577538.5_1_18:72347588-72589173:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8330688476562	2	590.832914	1179.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.96	1	29.96	29.46	30.46	0								0	0	0	0.29233	1	4285	4285		0.6015	0	1				19795	7206	13125	13257	26614	26614					0.0686363172842448
SWIGSHGVSTS	11	Unmodified	_SWIGSHGVSTS_					0	0	0			REV__nc|ENSG00000132466|O75179-4|ANKRD17	REV__nc|ENSG00000132466|O75179-4|ANKRD17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7593383789062	2	559.26727	1116.51999	0.38886	0.00021748	-3.3906	-0.0018963	-3.0018	-0.0016788	559.7672841743745	56.166	0.56028	56.166	55.979	56.539	0					55	19	4	0	0	0	0.30798	1	12183	12183		17.113	3.2068	1	546450	+		19796	9117	13126	13258	26615	26615					-0.033612234301244825
SWIIKYGRR	9	Unmodified	_SWIIKYGRR_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8447265625	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.75	1	84.75	84.25	85.25	0								0	0	0	0.2428	1	20908	20908		10.824	4.6181	1				19797	2508	13127	13259	26616	26616					0.09028222108076989
SWKLDGQIGLM	11	Unmodified	_SWKLDGQIGLM_					0	0	0			REV__ENSG00000179163|ENST00000374479|FUCA1	REV__ENSG00000179163|ENST00000374479|FUCA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.3082885742188	2	624.326273	1246.63799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.565	1	51.634	51.134	52.134	0.069874								0	0	0	0.31899	1	10655	10655		8.1555	1.0538	1		+		19798	10477	13128	13260	26617	26617					0.024540128341413947
SWKSQNWRW	9	Unmodified	_SWKSQNWRW_					0	0	0		ENST00000458239.1_1_2:219496901-219498831:+|nuORF	ENST00000458239.1_1_2:219496901-219498831:+|nuORF	ENST00000458239.1_1_2:219496901-219498831:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.289794921875	2	639.312346	1276.61014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.2	1	102.2	101.7	102.7	0								0	0	0	0.29303	1	26214	26214		0.45834	0	1				19799	6593	13129	13261	26618	26618					-0.017101293110499682
SWLEIRRLF	9	Unmodified	_SWLEIRRLF_					0	0	0			REV__ENST00000252674.8_2_19:6211645-6212743:-|nuORF	REV__ENST00000252674.8_2_19:6211645-6212743:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5708923339844	3	407.236385	1218.68733	0.050908	2.0732E-05	-0.2101	-8.5562E-05	-0.15919	-6.483E-05	407.570635422992	60.844	0.61333	60.918	60.774	61.388	0.073418					42	20	3	0	0	0	0.25424	1	13539	13539		6.6304	1.2277	1	152060	+		19800	11212	13130	13262	26619	26619					0.0867308890528875
SWLETYFI	8	Unmodified	_SWLETYFI_					0	0	0		tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1	tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1	tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7635498046875	2	529.7633	1057.51205	0.35746	0.00018937	-0.14791	-7.8355E-05	0.20955	0.00011101	529.7633210031071	76.416	0.50899	76.416	76.272	76.781	0					35	17	3	0	0	0	0.49441	1	18361	18361		13.508	1.8676	1	516040			19801	13562	13131	13263	26620	26620					-0.01440750679626035
SWLPHLATE	9	Unmodified	_SWLPHLATE_					0	0	0		ENST00000490577.5_1_13:50656484-50730996:+|nuORF	ENST00000490577.5_1_13:50656484-50730996:+|nuORF	ENST00000490577.5_1_13:50656484-50730996:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2700805664062	2	527.271824	1052.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.596	1	29.596	29.096	30.096	0								0	0	0	0.28631	1	4178	4178		1.8442	0.19162	1				19802	6805	13132	13264	26621	26621					0.004931699261760514
SWMIKPDDH	9	Unmodified	_SWMIKPDDH_					0	0	0			REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant	REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7598876953125	2	564.760766	1127.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.951	1	26.951	26.451	27.451	0								0	0	0	0.2927	1	3407	3407		0.52476	0	1		+		19803	10587	13133	13265	26622	26622					-0.0516737781390475
SWNYGAHH	8	Unmodified	_SWNYGAHH_					0	0	0		nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2557067871094	2	486.209558	970.404563	-0.2598	-0.00012632	0.12129	5.8973E-05	-0.13851	-6.7345E-05	486.2094943971548	33.506	0.33503	33.506	33.404	33.739	0					15	11	2	0	0	0	0.3576	1	5383	5383		0.79363	0.10326	1	13205			19804	7535	13134	13266	26623	26623					-0.08182282770485472
SWPDWALPRL	10	Unmodified	_SWPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.827392578125	2	620.827298	1239.64004	0.40318	0.0002503	-0.21657	-0.00013445	0.18661	0.00011585	620.827156616477	81.423	2.0852	81.423	81.056	83.141	0					184	72	5	0	0	0	2.251E-05	6	19940	19848;19897;19940;19984;20031;20340		128.57	92.067	1	3451400			19805	3486	13135	13267	26624;26625;26626;26627;26628;26629	26626					0.029808096342549106
SWPDWALPRL	10	Unmodified	_SWPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.8275146484375	2	620.827298	1239.64004	0.19708	0.00012235	-0.022812	-1.4163E-05	0.17426	0.00010819	620.8272656274962	81.456	1.6562	81.478	81.079	82.735	0.021866					170	59	5	0	0	0	2.9549E-05	5	19724	19671;19724;19769;19811;19864		125.04	88.532	1	3239200			19806	3486	13135	13267	26630;26631;26632;26633;26634	26631					0.029808096342549106
SWPGLAVGNLF	11	Unmodified	_SWPGLAVGNLF_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.808837890625	2	580.808574	1159.60259	0.41672	0.00024204	-0.29635	-0.00017212	0.12038	6.9916E-05	580.8082611839122	94.967	0.44467	95.006	94.842	95.287	0.038872					32	18	2	0	0	0	0.25966	1	23868	23868		22.658	11.759	1	149260			19807	4866	13136	13268	26635	26635					0.02917718368644273
SWPGLAVGNLF	11	Unmodified	_SWPGLAVGNLF_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	580.808574	1159.60259	0.40704	0.00023641	-0.049938	-2.9004E-05	0.3571	0.00020741	580.8082659381125	95.008	0.5368	95.008	94.837	95.374	0	0.00090459	0.00010131	NaN	22.658	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152470			19808	4866	13136	13268							0.02917718368644273
SWPLAHHRTI	10	Unmodified	_SWPLAHHRTI_					0	0	0		ENSG00000264717|ENST00000576178|NPY4R2;ENSG00000204174|ENST00000374312|NPY4R	ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.8901672363281	3	406.556118	1216.64652	0.31783	0.00012922	-1.0532	-0.0004282	-0.73541	-0.00029899	406.5555025089688	35.462	1.2159	35.462	35.116	36.332	0					76	45	3	0	0	0	0.31595	1	5913	5913		7.0371	7.0371	1	136220			19809	5452	13137	13269	26636	26636					0.04686747585674311
SWPRGVSEKEF	11	Unmodified	_SWPRGVSEKEF_					0	0	0		ENST00000561481.1_1_16:74497146-74501752:-|nuORF	ENST00000561481.1_1_16:74497146-74501752:-|nuORF	ENST00000561481.1_1_16:74497146-74501752:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2214660644531	3	441.222693	1320.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.844	1	60.844	60.344	61.344	0								0	0	0	0.30913	1	13614	13614		11.631	4.1543	1				19810	7155	13138	13270	26637	26637					-0.00124716924869972
SWPRGVSEKEF	11	Unmodified	_SWPRGVSEKEF_					0	0	0		ENST00000561481.1_1_16:74497146-74501752:-|nuORF	ENST00000561481.1_1_16:74497146-74501752:-|nuORF	ENST00000561481.1_1_16:74497146-74501752:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.2216491699219	3	441.222693	1320.64625	0.11172	4.9292E-05	-3.5802	-0.0015797	-3.4685	-0.0015304	441.2213976918934	60.75	0.73102	60.824	60.629	61.36	0.073421					28	24	2	0	0	0	0.33361	1	13430	13430		14.171	6.2253	1	85803			19811	7155	13138	13270	26638	26638					-0.00124716924869972
SWRRGHFHR	9	Unmodified	_SWRRGHFHR_					0	0	0		ENST00000474013.1_1_7:99971734-99973868:+|nuORF;nc|ENSG00000085514|Q9UKJ1-4|PILRA;ENST00000484934.1_1_7:99971228-99972163:+|nuORF;nc|ENSG00000085514|Q9UKJ1-3|PILRA;nc|ENSG00000085514|Q9UKJ1-2|PILRA;ENSG00000085514|ENST00000198536|PILRA	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.2587890625	2	619.823747	1237.63294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.217	1	45.217	44.717	45.717	0								0	0	0	0.29525	1	8868	8868		0	0	1				19812	959	13139	13271	26639	26639					0.02362934597090316
SWSLPDGTMIN	11	Unmodified	_SWSLPDGTMIN_					0	0	0		nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF;ENSG00000152580|ENST00000282466|IGSF10	nc|ENSG00000152580|Q6WRI0-3|IGSF10	nc|ENSG00000152580|Q6WRI0-3|IGSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.5257873535156	3	407.525384	1219.55432	0.67746	0.00027608	0.83299	0.00033946	1.5104	0.00061554	407.52568699748906	55.538	0.6892	55.538	55.318	56.007	0					63	23	4	0	0	0	0.38806	1	11991	11991		7.0371	0	1	340570			19813	3499	13140	13272	26640	26640					-0.0466714333354048
SWSLPDGTMIN	11	Unmodified	_SWSLPDGTMIN_					0	0	0		nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF;ENSG00000152580|ENST00000282466|IGSF10	nc|ENSG00000152580|Q6WRI0-3|IGSF10	nc|ENSG00000152580|Q6WRI0-3|IGSF10	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	407.525384	1219.55432	0.67746	0.00027608	0.83299	0.00033946	1.5104	0.00061554	407.52568699748906	55.538	0.6892	55.538	55.318	56.007	0	-0.0076856	-0.00022293	NaN	7.0371	63	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340570			19814	3499	13140	13272							-0.0466714333354048
SWTLTNADF	9	Unmodified	_SWTLTNADF_					0	0	0			REV__nc|ENSG00000136933|Q7Z6M1-2|RABEPK	REV__nc|ENSG00000136933|Q7Z6M1-2|RABEPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7468872070312	2	527.745639	1053.47673	0.61065	0.00032227	1.3575	0.00071642	1.9682	0.0010387	527.7462741078435	80.535	1.041	80.558	80.188	81.229	0.023605					52	36	2	0	0	0	0.30397	1	19564	19564		6.2058	0.44535	1	178010	+		19815	9260	13141	13273	26641	26641					-0.047874132074412046
SWYSPDAKF	9	Unmodified	_SWYSPDAKF_					0	0	0		SERINC3|p.Q434E|1|0.5|ENSG00000132824|chr20:44500418-44500418|G/C|missense_variant;nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3	SERINC3|p.Q434E|1|0.5|ENSG00000132824|chr20:44500418-44500418|G/C|missense_variant	SERINC3|p.Q434E|1|0.5|ENSG00000132824|chr20:44500418-44500418|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7435913085938	2	550.756007	1099.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.485	1	49.485	48.985	49.985	0								0	0	0	0.25992	1	10156	10156		7.2892	1.0834	1				19816	2598	13142	13274	26642	26642					-0.048308228277846865
SYADIQSWL	9	Unmodified	_SYADIQSWL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14;chr1:200605390-200605864|464|12.56|0.51|4.61|-|0|KIF14,KIF14|1	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2926025390625	2	541.761289	1081.50803	0.55834	0.00030249	0.90648	0.00049109	1.4648	0.00079358	541.7613206504641	83.435	0.37595	83.435	83.341	83.717	0					28	12	3	0	0	0	0.20194	1	20512	20512		24.021	9.1823	1	152950			19817	2030	13143	13275	26643	26643					-0.02946840173331111
SYADIQSWL	9	Unmodified	_SYADIQSWL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14;chr1:200605390-200605864|464|12.56|0.51|4.61|-|0|KIF14,KIF14|1	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2925415039062	2	541.761289	1081.50803	0.36845	0.00019961	1.6118	0.00087323	1.9803	0.0010728	542.2635398448427	83.492	0.55412	83.513	83.225	83.779	0.021751					40	19	3	0	0	0	0.22912	1	20342	20342		18.146	8.0724	1	140530			19818	2030	13143	13275	26644	26644					-0.02946840173331111
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2481689453125	2	515.248015	1028.48148	0.31579	0.00016271	-0.11912	-6.1375E-05	0.19667	0.00010134	515.2479308532774	78.941	0.42493	78.941	78.705	79.13	0					33	14	3	0	0	0	0.0016252	2	19152	19104;19152		118.07	28.668	1	358960			19819	2103	13144	13276	26645;26646	26646					-0.03162529064661612
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.247802734375	2	515.248015	1028.48148	0.35907	0.00018501	-0.22633	-0.00011662	0.13274	6.8393E-05	515.2477442322518	78.889	0.41748	78.919	78.712	79.129	0.030159					31	14	3	0	0	0	0.00041987	2	18946	18946;18994		133.05	33.297	1	353650			19820	2103	13144	13276	26647;26648	26647					-0.03162529064661612
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(160)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2578125	2	552.257525	1102.5005	0.50954	0.0002814	0.1163	6.4229E-05	0.62584	0.00034563	552.2575431501137	74.626	1.4449	74.626	74.144	75.589	0					151	53	5	0	0	0	3.513E-06	4	17794	17747;17794;17844;17897		155.03	102.76	1	3515800			19821	1228	13145	13277	26649;26650;26651;26652	26650		72			-0.04665315765282685
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(180)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2578125	2	552.257525	1102.5005	0.42461	0.00023449	0.20262	0.0001119	0.62722	0.00034639	552.2576045373905	77.135	2.5427	77.135	76.272	78.815	0					278	95	4	0	0	0	8.6872E-13	8	18545	18456;18503;18545;18587;18629;18672;18716;18766		183.04	128.27	1	7376300			19822	1228	13145	13277	26653;26654;26655;26656;26657;26658;26659;26660	26655		72			-0.04665315765282685
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(140)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2577514648438	2	552.257525	1102.5005	0.57852	0.00031949	0.1345	7.4279E-05	0.71302	0.00039377	552.2575335380495	74.451	1.3711	74.499	74.203	75.574	0.048538					127	49	4	0	0	0	1.7199E-05	3	17611	17611;17659;17703		142.08	93.734	1	3491800			19823	1228	13145	13277	26661;26662;26663	26661		72			-0.04665315765282685
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(170)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2578125	2	552.257525	1102.5005	0.57638	0.00031831	0.086816	4.7945E-05	0.66319	0.00036625	552.2575452072599	77.17	3.09	77.204	76.28	79.37	0.034485					299	114	4	0	0	0	4.5562E-09	8	18383	18289;18339;18383;18432;18471;18512;18569;18736		168.66	113.89	1	5411200			19824	1228	13145	13277	26664;26665;26666;26667;26668;26669;26670;26671	26666		72			-0.04665315765282685
SYADQMFLL	9	Unmodified	_SYADQMFLL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2600708007812	2	544.260068	1086.50558	0.088899	4.8384E-05	0.36404	0.00019813	0.45294	0.00024651	544.2602433177973	86.749	0.76321	86.749	86.5	87.263	0					62	32	2	0	0	0	0.0016252	1	21562	21562		118.07	65.8	1	1587400			19825	1228	13145	13278	26672	26672					-0.034210119026511165
SYADQMFLL	9	Unmodified	_SYADQMFLL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2601928710938	2	544.260068	1086.50558	0.23153	0.00012602	0.18081	9.8406E-05	0.41234	0.00022442	544.2601429767508	86.719	0.6758	86.747	86.539	87.215	0.027573					62	30	4	0	0	0	0.0016252	1	21384	21384		118.07	65.8	1	1542400			19826	1228	13145	13278	26673	26673					-0.034210119026511165
SYAFHFLAVS	10	Unmodified	_SYAFHFLAVS_					0	0	0		ENSG00000168306|ENST00000302819|ACOX2	ENSG00000168306|ENST00000302819|ACOX2	ENSG00000168306|ENST00000302819|ACOX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.28759765625	2	571.287474	1140.5604	0.28626	0.00016354	0.84484	0.00048265	1.1311	0.00064618	571.2873546981733	68.64	0.76127	68.702	68.407	69.168	0.062119					70	27	3	0	0	0	0.24016	1	15814	15814		29.082	5.061	1	355300			19827	4278	13146	13279	26674	26674					-0.004262570397258969
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2800903320312	2	544.28018	1086.54581	0.083201	4.5285E-05	-0.33109	-0.0001802	-0.24789	-0.00013492	544.2799238131045	22.175	0.25596	22.277	22.148	22.404	0.10178					32	18	2	0	0	0	0.32831	1	1943	1943		2.9952	1.151	1	25655			19828	6487	13147	13280	26675	26675					0.005996708121301708
SYALLTYMI	9	Oxidation (M)	_SYALLTYM(Oxidation (M))I_		SYALLTYM(1)I		SYALLTYM(42)I	0	0	1		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;nc|ENSG00000176890|P04818-3|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.778564453125	2	545.778093	1089.54163	0.48256	0.00026337	0.60687	0.00033122	1.0894	0.00059459	545.778410675039	79.388	0.49531	79.388	79.157	79.652	0					26	16	2	0	0	0	0.05573	1	19288	19288		42.095	20.348	1	220180			19829	4675	13148	13281	26676	26676		275			0.0004444527419309452
SYALLWNLL	9	Unmodified	_SYALLWNLL_					0	0	0		ENSG00000050555|ENST00000361069|LAMC3	ENSG00000050555|ENST00000361069|LAMC3	ENSG00000050555|ENST00000361069|LAMC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8074951171875	2	546.808042	1091.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.51	1	103.51	103.01	104.01	0								0	0	0	0.21527	1	26612	26612		15.847	5.0233	1				19830	583	13149	13282	26677	26677					0.0593950399975256
SYALLWNLL	9	Unmodified	_SYALLWNLL_					0	0	0		ENSG00000050555|ENST00000361069|LAMC3	ENSG00000050555|ENST00000361069|LAMC3	ENSG00000050555|ENST00000361069|LAMC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8079223632812	2	546.808042	1091.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.65	1	103.65	103.15	104.15	0								0	0	0	0.24978	1	26649	26649		9.3831	2.66	1				19831	583	13149	13282	26678	26678					0.0593950399975256
SYALLWNLL	9	Unmodified	_SYALLWNLL_					0	0	0		ENSG00000050555|ENST00000361069|LAMC3	ENSG00000050555|ENST00000361069|LAMC3	ENSG00000050555|ENST00000361069|LAMC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3098754882812	2	546.808042	1091.60153	0.41602	0.00022748	-0.62505	-0.00034178	-0.20903	-0.0001143	546.8076679629539	103.38	0.27547	103.42	103.3	103.58	0.03791					43	27	2	0	0	0	0.15282	3	26397	26397;26399;26434		24.021	7.0783	1	148620			19832	583	13149	13282	26679;26680;26681	26679					0.0593950399975256
SYANVKQWL	9	Unmodified	_SYANVKQWL_					0	0	0		nc|ENSG00000233111|Q92928|RAB1C;ENSG00000174903|ENST00000311481|RAB1B	nc|ENSG00000233111|Q92928|RAB1C	nc|ENSG00000233111|Q92928|RAB1C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.79296875	2	554.792924	1107.57129	0.56591	0.00031396	0.31868	0.0001768	0.88459	0.00049076	554.7929845166476	56.814	0.36028	56.88	56.706	57.066	0.066448					23	12	3	0	0	0	0.055673	1	12264	12264		60.074	27.768	1	177250			19833	4603	13150	13283	26682	26682					0.021811453345662812
SYANYFIRL	9	Unmodified	_SYANYFIRL_					0	0	0		ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8012084960938	2	573.800749	1145.58694	0.36967	0.00021212	0.95809	0.00054976	1.3278	0.00076187	573.8011470579518	68.078	1.3607	68.078	67.771	69.132	0					123	50	4	0	0	0	5.8571E-07	5	15826	15783;15826;15870;16026;16077		157.8	99.116	1	1033600			19834	1157	13151	13284	26683;26684;26685;26686;26687	26684					0.01997431851600595
SYANYFIRL	9	Unmodified	_SYANYFIRL_					0	0	0		ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.80126953125	2	573.800749	1145.58694	0.48203	0.00027659	0.95015	0.0005452	1.4322	0.00082179	573.8011177684971	67.962	1.5309	68.025	67.578	69.109	0.063507					122	56	3	0	0	0	5.8571E-07	5	15637	15597;15637;15683;15733;15806		157.8	99.116	1	1172200			19835	1157	13151	13284	26688;26689;26690;26691;26692	26689					0.01997431851600595
SYAPPTDSF	9	Unmodified	_SYAPPTDSF_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7192687988281	2	492.71909	983.423627	0.65942	0.00032491	-0.27413	-0.00013507	0.38529	0.00018984	492.71888072615144	54.215	0.65463	54.215	53.898	54.553	0					74	25	4	0	0	0	2.2448E-09	2	11607	11607;11658		172.91	91.293	1	996130			19836	7489	13152	13285	26693;26694	26693					-0.06874790990093516
SYAPPTDSF	9	Unmodified	_SYAPPTDSF_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7191467285156	2	492.71909	983.423627	0.56666	0.0002792	-0.18612	-9.1705E-05	0.38054	0.0001875	492.718967846694	54.143	0.64166	54.208	53.922	54.563	0.065128					67	27	3	0	0	0	2.2448E-09	2	11458	11458;11504		172.91	101.77	1	827380			19837	7489	13152	13285	26695;26696	26695					-0.06874790990093516
SYAPPTDSFL	10	Unmodified	_SYAPPTDSFL_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2608642578125	2	549.261122	1096.50769	0.67314	0.00036973	0.90307	0.00049602	1.5762	0.00086575	549.2613768670824	80.188	0.33326	80.212	80.046	80.379	0.023605					23	11	3	0	0	0	0.17902	1	19364	19364		36.127	1.7253	1	326570			19838	7489	13153	13286	26697	26697					-0.03670259893192451
SYAQYVHNL	9	Unmodified	_SYAQYVHNL_					0	0	0		ENST00000543374.1_1_11:73555872-73556061:+|nuORF;ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48;ENSG00000175581|ENST00000310614|MRPL48	ENST00000543374.1_1_11:73555872-73556061:+|nuORF	ENST00000543374.1_1_11:73555872-73556061:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7671508789062	2	547.766906	1093.51926	0.22657	0.00012411	0.82018	0.00044927	1.0467	0.00057337	547.7673678293813	48.678	0.40486	48.678	48.483	48.888	0					28	13	3	0	0	0	0.032194	1	9922	9922		49.554	36.512	1	136870			19839	4630	13154	13287	26698	26698					-0.023760180791896346
SYAQYVHNL	9	Unmodified	_SYAQYVHNL_					0	0	0		ENST00000543374.1_1_11:73555872-73556061:+|nuORF;ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48;ENSG00000175581|ENST00000310614|MRPL48	ENST00000543374.1_1_11:73555872-73556061:+|nuORF	ENST00000543374.1_1_11:73555872-73556061:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7671508789062	2	547.766906	1093.51926	0.25525	0.00013982	0.73344	0.00040175	0.98869	0.00054157	547.7674182938322	48.635	0.48929	48.711	48.411	48.9	0.076603					26	15	3	0	0	0	0.088609	1	9774	9774		34.932	22.401	1	88152			19840	4630	13154	13287	26699	26699					-0.023760180791896346
SYARRLYR	8	Unmodified	_SYARRLYR_					0	0	0			REV__nc|ENSG00000142731|O00444-3|PLK4	REV__nc|ENSG00000142731|O00444-3|PLK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.27978515625	2	542.804157	1083.59376	0.46866	0.00025439	-1.1502	-0.00062433	-0.68153	-0.00036994	542.8032760829682	57.327	0.73138	57.396	56.993	57.724	0.068375					45	27	2	0	0	0	0.35759	1	12347	12347		11.64	3.047	1	311560	+		19841	9441	13155	13288	26700	26700					0.05530789522822488
SYASLQQNKW	10	Unmodified	_SYASLQQNKW_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.8034057617188	2	612.80402	1223.59349	-0.38691	-0.0002371	-0.28889	-0.00017703	-0.67579	-0.00041413	612.8037719647157	44.584	0.4906	44.584	44.418	44.909	0					20	17	2	0	0	0	0.44938	1	8692	8692		4.897	0.95262	1	65964			19842	1398	13156	13289	26701	26701					-0.009366749876789981
SYASLQQNKW	10	Unmodified	_SYASLQQNKW_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.3314819335938	2	612.80402	1223.59349	-0.11929	-7.3103E-05	1.042	0.00063854	0.92271	0.00056544	612.8053467068759	44.537	0.43045	44.625	44.395	44.825	0.08754					21	15	2	0	0	0	0.31443	1	8535	8535		16.149	7.9936	1	79772			19843	1398	13156	13289	26702	26702					-0.009366749876789981
SYATLLHVL	9	Unmodified	_SYATLLHVL_					0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.79290771484375	2	508.792392	1015.57023	0.38299	0.00019486	0.031824	1.6192E-05	0.41481	0.00021105	508.7923762579949	68.51	0.29266	68.51	68.377	68.669	0					14	9	2	0	0	0	0.0045547	1	15960	15960		88.904	40.558	1	78637			19844	4947	13157	13290	26703	26703					0.06306930965638458
SYAYILEAF	9	Unmodified	_SYAYILEAF_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.76904296875	2	538.768583	1075.52261	0.50601	0.00027262	0.20769	0.00011189	0.71369	0.00038451	538.7686796465354	87.707	0.81822	87.707	87.498	88.317	0					57	29	3	0	0	0	0.003963	2	21838	21792;21838		103.75	73.112	1	439490			19845	1350	13158	13291	26704;26705	26705					-0.012127680251978745
SYAYILEAF	9	Unmodified	_SYAYILEAF_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7688598632812	2	538.768583	1075.52261	0.43727	0.00023559	0.21441	0.00011552	0.65168	0.0003511	538.7687140020012	87.669	0.74684	87.699	87.504	88.251	0.030037					53	26	3	0	0	0	0.003963	3	21644	21603;21644;21690		103.75	73.112	1	503030			19846	1350	13158	13291	26706;26707;26708	26707					-0.012127680251978745
SYCRGLFYW	9	Unmodified	_SYCRGLFYW_					0	0	0			REV__nc|ENSG00000183878|O14607-5|UTY	REV__nc|ENSG00000183878|O14607-5|UTY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7744140625	2	597.773677	1193.5328	0.34285	0.00020495	-0.064528	-3.8573E-05	0.27832	0.00016637	597.7739269349466	53.632	0.75965	53.698	53.555	54.315	0.06543					49	30	3	0	0	0	0.3354	1	11437	11437		2.0598	0	1	88608	+		19847	10617	13159	13292	26709	26709					-0.05622483571619341
SYCYPPLC	8	Unmodified	_SYCYPPLC_					0	0	0			REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.19580078125	2	473.195882	944.377211	0.10508	4.9721E-05	0.077111	3.6489E-05	0.18219	8.621E-05	473.19585800495184	76.283	0.80992	76.283	76.137	76.947	0					59	30	3	0	0	0	0.38286	2	18357	18357;18430		28.173	11.231	1	1177100	+		19848	11982	13160	13293	26710;26711	26710					-0.09720270417392385
SYCYPPLC	8	Unmodified	_SYCYPPLC_					0	0	0			REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.1957702636719	2	473.195882	944.377211	0.073761	3.4904E-05	-0.075512	-3.5732E-05	-0.0017509	-8.2853E-07	473.1958219856854	76.262	0.76147	76.301	76.149	76.911	0.03923					47	28	2	0	0	0	0.44023	3	18143	18143;18198;18261		20.871	14.582	1	1365200	+		19849	11982	13160	13293	26712;26713;26714	26712					-0.09720270417392385
SYDHVELTF	9	Unmodified	_SYDHVELTF_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENSG00000132471|ENST00000254806|WBP2	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7589111328125	2	555.758746	1109.50294	0.59379	0.00033001	-0.61509	-0.00034184	-0.021298	-1.1837E-05	555.7584295255831	59.989	0.88509	59.989	59.758	60.643	0					65	31	3	0	0	0	0.0053304	2	13342	13342;13383		81.613	57.593	1	388610			19850	6426	13161	13294	26715;26716	26715					-0.04743144035955993
SYDHVELTF	9	Unmodified	_SYDHVELTF_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENSG00000132471|ENST00000254806|WBP2	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7589111328125	2	555.758746	1109.50294	0.43912	0.00024404	-0.16039	-8.9137E-05	0.27873	0.00015491	555.7585980641958	59.878	0.70507	59.951	59.756	60.461	0.072338					50	25	3	0	0	0	0.17247	1	13221	13221		21.747	7.165	1	303510			19851	6426	13161	13294	26717	26717					-0.04743144035955993
SYDLANRDF	9	Unmodified	_SYDLANRDF_					0	0	0		DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8143920898438	2	550.753995	1099.49344	0.45262	0.00024928	0.093794	5.1658E-05	0.54641	0.00030094	550.7541672924798	47.715	0.38386	47.715	47.557	47.941	0					19	12	2	0	0	0	0.18321	1	9618	9618		30.703	14.554	1	76070			19852	278	13162	13295	26718	26718					-0.052329123214803985
SYDLANRDF	9	Unmodified	_SYDLANRDF_					0	0	0		DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8145141601562	2	550.753995	1099.49344	0.66375	0.00036556	0.259	0.00014265	0.92275	0.00050821	550.7542312473681	47.643	0.39278	47.723	47.612	48.004	0.080029					20	14	2	0	0	0	0.1755	1	9487	9487		32.037	10.501	1	86768			19853	278	13162	13295	26719	26719					-0.052329123214803985
SYDPDFNQL	9	Unmodified	_SYDPDFNQL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7503662109375	2	549.740554	1097.46655	0.46701	0.00025673	-0.55962	-0.00030765	-0.092613	-5.0913E-05	549.7405739169214	62.577	0.18665	62.577	62.473	62.66	0					10	6	2	0	0	0	0.017478	1	14160	14160		60.074	16.216	1	93347			19854	730	13163	13296	26720	26720					-0.0782802093265218
SYDPDFNQL	9	Unmodified	_SYDPDFNQL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7505493164062	2	549.740554	1097.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.532	1	62.605	62.105	63.105	0.072701								0	0	0	0.084126	1	13990	13990		38.176	2.0485	1				19855	730	13163	13296	26721	26721					-0.0782802093265218
SYDPLRIYLF	10	Unmodified	_SYDPLRIYLF_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.8427124023438	2	643.842613	1285.67067	0.36943	0.00023785	0.063123	4.0641E-05	0.43255	0.00027849	643.8425927234892	82.917	0.98463	82.917	82.674	83.658	0					89	33	4	0	0	0	0.012609	1	20334	20334		74.2	41.414	1	1245300			19856	2754	13164	13297	26722	26722					0.039265432286583746
SYDPLRIYLF	10	Unmodified	_SYDPLRIYLF_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.8428955078125	2	643.842613	1285.67067	0.19675	0.00012668	0.27075	0.00017432	0.46751	0.000301	643.8427442922163	82.87	1.2193	82.891	82.589	83.809	0.021744					97	42	4	0	0	0	0.0016735	1	20176	20176		83.429	43.479	1	1271600			19857	2754	13164	13297	26723	26723					0.039265432286583746
SYDPLVIYL	9	Unmodified	_SYDPLVIYL_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7920532226562	2	541.792058	1081.56956	0.40164	0.00021761	0.035844	1.942E-05	0.43749	0.00023703	541.7920710178261	91.13	0.49449	91.13	90.94	91.435	0					31	16	3	0	0	0	0.083504	1	22867	22867		36.044	7.5574	1	296660			19858	2081	13165	13298	26724	26724					0.03204091525935837
SYDPLVIYL	9	Unmodified	_SYDPLVIYL_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	541.792058	1081.56956	0.23747	0.00012866	0.12892	6.9851E-05	0.3664	0.00019851	541.7920594635523	91.111	0.4996	91.147	90.936	91.436	0.035446	0.0081624	3.7026E-05	NaN	36.044	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206210			19859	2081	13165	13298							0.03204091525935837
SYDPLYYIN	9	Unmodified	_SYDPLYYIN_					0	0	0			REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.770263671875	2	574.268947	1146.52334	0.29851	0.00017142	-0.53887	-0.00030946	-0.24037	-0.00013804	574.268448723481	61.585	1.9484	61.585	60.834	62.783	0					264	83	4	0	0	0	0.092418	3	13866	13788;13866;13909		34.102	6.9062	1	9751300	+		19860	13103	13166	13299	26725;26726;26727	26726					-0.044059733761287134
SYDPLYYIN	9	Unmodified	_SYDPLYYIN_					0	0	0			REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2687377929688	2	574.268947	1146.52334	0.2824	0.00016218	-0.46959	-0.00026967	-0.18719	-0.0001075	574.268456016587	61.471	1.6382	61.545	61.11	62.748	0.073421					217	73	4	0	0	0	0.092418	2	13633	13633;13751		34.102	2.8341	1	6966000	+		19861	13103	13166	13299	26728;26729	26728					-0.044059733761287134
SYDPTIENTF	10	Unmodified	_SYDPTIENTF_					0	0	0		ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3190307617188	2	593.766768	1185.51898	0.47967	0.00028481	0.68671	0.00040775	1.1664	0.00069256	593.7670806454998	63.761	0.28097	63.761	63.563	63.844	0					15	9	2	0	0	0	0.28626	1	14480	14480		28.495	16.254	1	164960			19862	1529	13167	13300	26730	26730					-0.06635482589740604
SYDPTIENTF	10	Unmodified	_SYDPTIENTF_					0	0	0		ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3189086914062	2	593.766768	1185.51898	0.37626	0.00022341	0.14518	8.6201E-05	0.52143	0.00030961	593.7669671921474	63.652	0.32477	63.723	63.534	63.859	0.071018					17	10	3	0	0	0	0.31547	1	14335	14335		13.615	4.8695	1	119310			19863	1529	13167	13300	26731	26731					-0.06635482589740604
SYDRGQPI	8	Unmodified	_SYDRGQPI_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.2324523925781	2	468.232699	934.450845	-0.20154	-9.437E-05	0.030598	1.4327E-05	-0.17095	-8.0042E-05	468.232618558113	31.397	0.60508	31.397	31.215	31.82	0					56	26	3	0	0	0	0.46914	1	4702	4702		16.942	0	1	125030			19864	1978	13168	13301	26732	26732					-0.01900262659046348
SYDVFQLEF	9	Unmodified	_SYDVFQLEF_					0	0	0		ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2691650390625	2	574.268947	1146.52334	0.33626	0.0001931	0.055532	3.1891E-05	0.39179	0.00022499	574.268911365933	90.986	1.3796	90.986	90.708	92.088	0					76	33	3	0	0	0	8.8922E-09	4	22796	22750;22796;22843;22914		160.69	116.83	1	3962900			19865	826	13169	13302	26733;26734;26735;26736	26734					-0.044059733761287134
SYDVFQLEF	9	Unmodified	_SYDVFQLEF_					0	0	0		ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2692260742188	2	574.268947	1146.52334	0.10592	6.0827E-05	0.24159	0.00013874	0.34751	0.00019957	574.2690059121812	91.001	0.98975	91.037	90.729	91.719	0.035446					108	36	5	0	0	0	8.8922E-09	4	22643	22597;22643;22688;22744		160.69	116.83	1	4154500			19866	826	13169	13302	26737;26738;26739;26740	26738					-0.044059733761287134
SYDVFQLEF	9	Unmodified	_SYDVFQLEF_					0	0	0		ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7836303710938	2	574.268947	1146.52334	0.34994	0.00020096	-2.8863	-0.0016575	-2.5364	-0.0014566	574.2679207109531	91.833	0.40819	91.869	91.72	92.128	0.03653					19	14	2	0	0	0	0.24683	1	22885	22885		11.495	3.5846	1	77525			19867	826	13169	13302	26741	26741					-0.044059733761287134
SYDVFQLEF	9	Unmodified	_SYDVFQLEF_					0	0	0		ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	574.268947	1146.52334	0.45181	0.00025946	-1.8806	-0.00108	-1.4288	-0.00082052	574.267862142191	91.777	0.46325	91.777	91.624	92.088	0	-0.046397	0.00025291	NaN	16.149	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94833			19868	826	13169	13302							-0.044059733761287134
SYDYYEWCL	9	Unmodified	_SYDYYEWCL_					0	0	0			REV__ENSG00000196620|ENST00000338206|UGT2B15	REV__ENSG00000196620|ENST00000338206|UGT2B15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.7420043945312	2	621.244615	1240.47468	-0.18113	-0.00011252	-2.2913	-0.0014234	-2.4724	-0.001536	621.2433271718842	49.985	0.30392	49.985	49.876	50.18	0					13	10	2	0	0	0	0.25579	1	10320	10320		4.3292	0	1	78529	+		19869	10824	13170	13303	26742	26742					-0.13594210007522634
SYEDFFSAL	9	Unmodified	_SYEDFFSAL_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7402954101562	2	539.740022	1077.46549	0.45221	0.00024407	0.41938	0.00022636	0.87159	0.00047043	539.7401323156256	88.981	0.34536	89.014	88.772	89.117	0.032257					21	13	2	0	0	0	0.22344	1	22040	22040		15.847	7.937	1	74624			19870	3542	13171	13304	26743	26743					-0.07014235301562621
SYEKVEFAL	9	Unmodified	_SYEKVEFAL_					0	0	0			REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF	REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2806396484375	2	543.279315	1084.54408	0.21876	0.00011885	0.25886	0.00014063	0.47762	0.00025948	543.2793427207365	56.777	1.0299	56.777	56.539	57.569	0					101	37	4	0	0	0	0.11816	2	12488	12488;12524		28.495	8.08	1	1873400	+		19871	8915	13172	13305	26744;26745	26744					0.005186170035358373
SYELPWLSL	9	Unmodified	_SYELPWLSL_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.805419921875	2	554.289682	1106.56481	0.60527	0.00033549	-2.6307	-0.0014582	-2.0254	-0.0011227	554.288670962383	78.578	0.23609	78.609	78.476	78.712	0.030159					12	7	2	0	0	0	0.25174	1	18882	18882		3.9444	0	1	67975			19872	13379	13173	13306	26746	26746					0.01579207383178982
SYEYRFLEF	9	Unmodified	_SYEYRFLEF_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2953491210938	2	627.295496	1252.57644	-0.0025089	-1.5738E-06	0.27771	0.0001742	0.2752	0.00017263	627.2956227259544	71.77	1.5491	71.77	71.36	72.909	0					123	54	3	0	0	0	0.002259	5	16956	16911;16956;17009;17067;17096		114.19	79.254	1	1679400			19873	2526	13174	13307	26747;26748;26749;26750;26751	26748					-0.03974595593467711
SYEYRFLEF	9	Unmodified	_SYEYRFLEF_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.2954711914062	2	627.295496	1252.57644	0.21474	0.0001347	0.075068	4.709E-05	0.28981	0.00018179	627.2955497387882	71.731	1.1869	71.788	71.408	72.595	0.057205					98	42	4	0	0	0	0.0039507	2	16783	16736;16783		103.82	68.891	1	1645000			19874	2526	13174	13307	26752;26753	26753					-0.03974595593467711
SYFDEPVEL	9	Unmodified	_SYFDEPVEL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.75244140625	2	549.75313	1097.49171	0.48942	0.00026906	1.5365	0.00084469	2.0259	0.0011138	549.7525897741782	75.484	0.46306	75.484	75.148	75.611	0					32	17	3	0	0	0	0.031665	1	18066	18066		49.933	29.479	1	319350			19875	5650	13175	13308	26754	26754					-0.05313966130074732
SYFDEPVEL	9	Unmodified	_SYFDEPVEL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7531127929688	2	549.75313	1097.49171	0.47619	0.00026179	1.7772	0.000977	2.2534	0.0012388	549.7527743991708	75.452	0.42581	75.496	75.169	75.595	0.044037					25	15	2	0	0	0	0.01943	1	17905	17905		58.679	31.795	1	248820			19876	5650	13175	13308	26755	26755					-0.05313966130074732
SYFPKILTF	9	Unmodified	_SYFPKILTF_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3106079101562	2	558.310418	1114.60628	0.46222	0.00025806	-0.31092	-0.00017359	0.1513	8.4474E-05	558.3101002687976	76.396	0.63406	76.396	76.173	76.807	0					47	23	3	0	0	0	0.034936	1	18359	18359		47.594	23.574	1	761770			19877	2943	13176	13309	26756	26756					0.05356388142513424
SYFPKILTF	9	Unmodified	_SYFPKILTF_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3106689453125	2	558.310418	1114.60628	0.5486	0.00030629	-0.33034	-0.00018443	0.21825	0.00012185	558.3101949694835	76.351	0.66201	76.39	76.163	76.825	0.03923					43	24	3	0	0	0	0.038996	1	18190	18190		45.74	26.483	1	705930			19878	2943	13176	13309	26757	26757					0.05356388142513424
SYFPTVPGVYI	11	Unmodified	_SYFPTVPGVYI_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8240966796875	2	621.823889	1241.63323	-0.12358	-7.6845E-05	1.3108	0.00081511	1.1873	0.00073827	621.8241885368714	89.276	0.46603	89.276	89.009	89.475	0					42	18	3	0	0	0	0.13727	3	22271	22244;22271;22289		39.95	30.567	1	282050			19879	2766	13177	13310	26758;26759;26760	26759					0.02207451963067797
SYFPTVPGVYI	11	Unmodified	_SYFPTVPGVYI_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8235473632812	2	621.823889	1241.63323	0.029465	1.8322E-05	1.012	0.00062928	1.0414	0.0006476	621.8241317841513	89.196	0.49479	89.228	88.99	89.485	0.032257					39	18	3	0	0	0	0.173	2	22082	22082;22122		34.402	25.019	1	340640			19880	2766	13177	13310	26761;26762	26761					0.02207451963067797
SYFYLRHWH	9	Unmodified	_SYFYLRHWH_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.5498352050781	3	436.880602	1307.61998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.033	1	68.033	67.533	68.533	0								0	0	0	0.29005	1	15809	15809		1.0715	0.3738	1				19881	4061	13178	13311	26763	26763					-0.021529413056669
SYGDILHVI	9	Unmodified	_SYGDILHVI_					0	0	0		ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3	ENST00000466140.5_1_X:69698992-69715274:+|nuORF	ENST00000466140.5_1_X:69698992-69715274:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.77398681640625	2	508.7742	1015.53385	0.47233	0.00024031	-0.21968	-0.00011177	0.25264	0.00012854	508.7740172407967	69.348	0.85217	69.348	69.191	70.043	0					68	29	4	0	0	0	0.00038046	5	16197	16197;16243;16298;16351;16405		133.7	59.279	1	1299100			19882	921	13179	13312	26764;26765;26766;26767;26768	26764					0.02670054068948957
SYGDILHVI	9	Unmodified	_SYGDILHVI_					0	0	0		ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3	ENST00000466140.5_1_X:69698992-69715274:+|nuORF	ENST00000466140.5_1_X:69698992-69715274:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7742004394531	2	508.7742	1015.53385	0.2093	0.00010649	-0.080314	-4.0862E-05	0.12899	6.5625E-05	508.77410027539423	69.341	0.86655	69.404	69.168	70.034	0.062126					69	32	4	0	0	0	0.0012363	4	16022	16022;16074;16127;16203		120.45	65.677	1	1452600			19883	921	13179	13312	26769;26770;26771;26772	26769					0.02670054068948957
SYGIIRGLQF	10	Unmodified	_SYGIIRGLQF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7613525390625	2	577.321848	1152.62914	0.42208	0.00024368	0.99226	0.00057285	1.4143	0.00081653	577.3221246601748	68.239	0.51682	68.239	68.07	68.587	0					33	17	3	0	0	0	0.17674	1	15887	15887		57.249	41.1	1	203510			19884	4573	13180	13313	26773	26773					0.05893407259986816
SYGIIRGLQF	10	Unmodified	_SYGIIRGLQF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.761474609375	2	577.321848	1152.62914	0.51699	0.00029847	0.75439	0.00043552	1.2714	0.000734	577.3219857418379	68.192	0.45693	68.255	68.103	68.56	0.063507					31	16	3	0	0	0	0.24582	1	15710	15710		43.982	29.576	1	197310			19885	4573	13180	13313	26774	26774					0.05893407259986816
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.8079528808594	2	510.808042	1019.60153	0.41749	0.00021326	-0.052313	-2.6722E-05	0.36518	0.00018654	510.8078537327029	62.766	0.82288	62.766	62.494	63.317	0					61	31	3	0	0	0	0.034936	2	14180	14180;14231		47.594	16.326	1	874020			19886	1750	13181	13314	26775;26776	26775					0.09251503999746546
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8082580566406	2	510.808042	1019.60153	0.36314	0.0001855	-0.096727	-4.9409E-05	0.26642	0.00013609	510.8078580794532	62.626	0.64404	62.698	62.478	63.122	0.072701					52	23	4	0	0	0	0.081383	2	13999	13999;14051		36.506	10.238	1	692000			19887	1750	13181	13314	26777;26778	26777					0.09251503999746546
SYGKSDVYQ	9	Unmodified	_SYGKSDVYQ_					0	0	0			REV__ENSG00000137710|ENST00000645495|RDX	REV__ENSG00000137710|ENST00000645495|RDX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7583618164062	2	523.743096	1045.47164	-0.069171	-3.6228E-05	0.12416	6.5029E-05	0.054991	2.8801E-05	523.7430553174623	45.917	0.6806	45.917	45.703	46.384	0					49	23	4	0	0	0	0.24767	1	9075	9075		13.042	0.80181	1	110750	+		19888	9283	13182	13315	26779	26779					-0.04927717070063409
SYGRRRLL	8	Unmodified	_SYGRRRLL_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.8081970214844	2	510.8067	1019.59885	0.48405	0.00024726	1.8094	0.00092424	2.2934	0.0011715	510.807895269259	63.604	0.70918	63.604	63.317	64.026	0					43	24	4	0	0	0	0.42348	1	14464	14464		23.148	0.41214	1	267960	+		19889	12764	13183	13316	26780	26780					0.08983093385461416
SYGSVFKAI	9	Unmodified	_SYGSVFKAI_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.263671875	2	486.263468	970.512382	0.41699	0.00020277	0.069307	3.3702E-05	0.4863	0.00023647	486.2633997514695	54.318	0.34911	54.318	54.131	54.48	0					27	13	3	0	0	0	0.015341	1	11615	11615		61.602	39.855	1	162680			19890	1409	13184	13317	26781	26781					0.025946690402406603
SYGSVFKAI	9	Unmodified	_SYGSVFKAI_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2636413574219	2	486.263468	970.512382	0.34128	0.00016595	0.15869	7.7163E-05	0.49997	0.00024312	486.26347635117224	54.261	0.26752	54.326	54.198	54.466	0.065132					19	9	3	0	0	0	0.081383	1	11480	11480		36.506	14.76	1	146060			19891	1409	13184	13317	26782	26782					0.025946690402406603
SYIAAISARF	10	Unmodified	_SYIAAISARF_					0	0	0		nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000113742|Q17RY0-3|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7505493164062	2	549.800749	1097.58694	0.43319	0.00023817	0.056392	3.1004E-05	0.48958	0.00026917	549.8007321486484	62.279	0.3019	62.279	62.149	62.451	0					17	10	2	0	0	0	0.28687	1	14062	14062		23.801	0	1	131680			19892	1570	13185	13318	26783	26783					0.04205431851596586
SYIAAISARF	10	Unmodified	_SYIAAISARF_					0	0	0		nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000113742|Q17RY0-3|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7503051757812	2	549.800749	1097.58694	0.43723	0.00024039	-0.74377	-0.00040892	-0.30654	-0.00016854	549.8002291048663	62.138	0.33755	62.211	62.087	62.424	0.073421					15	11	2	0	0	0	0.27931	1	13890	13890		32.898	8.2239	1	91827			19893	1570	13185	13318	26784	26784					0.04205431851596586
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.79730224609375	2	495.797143	989.579734	0.43802	0.00021717	-0.02058	-1.0204E-05	0.41744	0.00020697	495.7970553392642	90.674	0.74359	90.674	90.439	91.183	0					82	26	4	0	0	0	1.4799E-05	4	22716	22671;22716;22762;22807		144.35	96.004	1	2257500			19894	1358	13186	13319	26785;26786;26787;26788	26786					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7973327636719	2	495.797143	989.579734	0.12178	6.0379E-05	0.30606	0.00015175	0.42785	0.00021212	495.79723668784015	90.686	0.83045	90.721	90.424	91.254	0.035446					93	31	4	0	0	0	0.0005281	4	22539	22500;22539;22583;22631		131.27	93.294	1	2909200			19895	1358	13186	13319	26789;26790;26791;26792	26790					0.0845269925117691
SYICTHMYV	9	Unmodified	_SYICTHMYV_					0	0	0			REV__ENST00000258742.5_7:23240390-23240456:+|nuORF	REV__ENST00000258742.5_7:23240390-23240456:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3449096679688	2	558.74627	1115.47799	0.58569	0.00032725	-3.6983	-0.0020664	-3.1126	-0.0017392	559.2459084509733	74.43	0.49986	74.479	74.316	74.816	0.048546					39	17	3	0	0	0	0.25174	1	17593	17593		7.2892	0	1	96213	+		19896	11225	13187	13320	26793	26793					-0.07513238434535197
SYIDLLQRF	9	Unmodified	_SYIDLLQRF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.8140258789062	2	577.813856	1153.61316	0.35211	0.00020345	-0.17497	-0.0001011	0.17714	0.00010236	577.8137976452158	77.116	1.0608	77.116	76.838	77.899	0					68	43	2	0	0	0	2.973E-13	5	18547	18547;18598;18624;18689;18767		191.38	147.52	1	2751500			19897	2370	13188	13321	26794;26795;26796;26797;26798	26794					0.04249701023104535
SYIDLLQRF	9	Unmodified	_SYIDLLQRF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.814208984375	2	577.813856	1153.61316	0.47435	0.00027409	-0.17262	-9.9742E-05	0.30174	0.00017435	577.8137567313759	77.039	0.91982	77.074	76.848	77.768	0.034485					81	37	4	0	0	0	2.973E-13	3	18374	18374;18422;18473		191.38	139.11	1	2525700			19898	2370	13188	13321	26799;26800;26801	26799					0.04249701023104535
SYIDLLSSANA	11	Unmodified	_SYIDLLSSANA_					0	0	0			REV__ENSG00000166197|ENST00000605788|NOLC1	REV__ENSG00000166197|ENST00000605788|NOLC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.2882690429688	2	577.290411	1152.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.238	1	77.272	76.772	77.772	0.034485								0	0	0	0.20782	1	18463	18463		26.268	8.1332	1		+		19899	10065	13189	13322	26802	26802					-0.003912033186907138
SYIDRLISVF	10	Unmodified	_SYIDRLISVF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.835693359375	2	606.834788	1211.65502	0.965	0.0005856	-0.69158	-0.00041967	0.27342	0.00016592	606.8341294180077	84.114	0.3461	84.114	83.868	84.215	0					27	11	3	0	0	0	0.093146	2	20688	20688;20734		46.022	18.523	1	357760			19900	5216	13190	13323	26803;26804	26803					0.05766256711604001
SYIDRLISVF	10	Unmodified	_SYIDRLISVF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8349609375	2	606.834788	1211.65502	0.77061	0.00046764	-0.69115	-0.00041941	0.079466	4.8223E-05	606.8342804185568	84.141	0.3802	84.163	83.915	84.295	0.021744					34	13	3	0	0	0	0.2145	1	20527	20527		32.037	8.2477	1	605970			19901	5216	13190	13323	26805	26805					0.05766256711604001
SYIDTSTMEF	10	Unmodified	_SYIDTSTMEF_					0	0	0			REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1	REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8429565429688	2	597.255179	1192.49581	0.394	0.00023532	0.9854	0.00058853	1.3794	0.00082386	597.253893809529	75.154	0.73153	75.154	74.718	75.45	0					79	27	4	0	0	0	0.28526	1	17949	17949		27.629	8.3718	1	566000	+		19902	13303	13191	13324	26806	26806					-0.09274244698690381
SYIDTSTMEF	10	Unmodified	_SYIDTSTMEF_					0	0	0			REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1	REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8424072265625	2	597.255179	1192.49581	0.24257	0.00014488	0.81793	0.00048852	1.0605	0.00063339	597.7558464370327	75.1	0.77455	75.144	74.723	75.498	0.044044					72	27	4	0	0	0	0.26611	1	17824	17824		27.629	2.2295	1	563000	+		19903	13303	13191	13324	26807	26807					-0.09274244698690381
SYIDVAVKL	9	Unmodified	_SYIDVAVKL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.79388427734375	2	504.292225	1006.5699	0.40855	0.00020603	0.37339	0.0001883	0.78194	0.00039432	504.292499485934	63.58	1.3157	63.58	63.317	64.632	0					95	45	4	0	0	0	0.0043591	1	14426	14426		96.367	40.19	1	2064900			19904	994	13192	13325	26808	26808					0.06687511245809219
SYIDVAVKL	9	Unmodified	_SYIDVAVKL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.30914306640625	2	504.292225	1006.5699	0.37063	0.0001869	0.3905	0.00019693	0.76113	0.00038383	504.29248692524334	63.451	0.89235	63.522	63.31	64.202	0.071018					79	31	4	0	0	0	0.005983	1	14263	14263		79.596	29.663	1	2566000			19905	994	13192	13325	26809	26809					0.06687511245809219
SYIDVLPEF	9	Unmodified	_SYIDVLPEF_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7738037109375	2	541.773865	1081.53318	0.47012	0.0002547	-0.49595	-0.00026869	-0.025827	-1.3992E-05	541.7735820422171	88.549	0.6453	88.581	88.331	88.976	0.031601					51	26	3	0	0	0	0.12809	1	21912	21912		26.884	0	1	220820			19906	1498	13193	13326	26810	26810					-0.004327853707536633
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7913818359375	2	575.792589	1149.57063	0.06554	3.7737E-05	-0.95665	-0.00055083	-0.89111	-0.0005131	575.7922081619638	73.357	2.6389	73.357	73.053	75.692	0					295	98	6	0	0	0	4.8934E-13	3	17482	17432;17482;18126		188.58	114.15	1	117710000			19907	3854	13194	13327	26811;26812;26813	26812					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7926635742188	2	575.792589	1149.57063	0.33243	0.00019141	-0.099065	-5.7041E-05	0.23336	0.00013437	575.7925366780022	76.307	1.0085	76.307	76.195	77.204	0					66	36	2	0	0	0	0.03472	3	18386	18386;18467;18533		47.749	28.492	1	312440			19908	3854	13194	13327	26814;26815;26816	26814					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7930297851562	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.722	1	77.722	77.222	78.222	0								0	0	0	0.19239	1	18769	18769		19.257	6.7254	1				19909	3854	13194	13327	26817	26817					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7926635742188	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.908	1	77.908	77.408	78.408	0								0	0	0	0.19239	1	18826	18826		19.257	7.7623	1				19910	3854	13194	13327	26818	26818					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7911376953125	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.191	1	79.191	78.691	79.691	0								0	0	0	0.22204	1	19216	19216		14.838	0.93222	1				19911	3854	13194	13327	26819	26819					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.792724609375	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.125	1	81.125	80.625	81.625	0								0	0	0	0.27613	1	19806	19806		3.9444	0.3479	1				19912	3854	13194	13327	26820	26820					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7918090820312	2	575.792589	1149.57063	0.24178	0.00013922	-1.063	-0.00061206	-0.8212	-0.00047284	575.7921239009017	73.27	2.6522	73.322	73.036	75.688	0.052574					317	98	6	0	0	0	3.2846000000000005E-19	3	17250	17250;17295;17916		214.14	139.71	1	88568000			19913	3854	13194	13327	26821;26822;26823	26821					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7936401367188	2	575.792589	1149.57063	0.37053	0.00021335	0.23211	0.00013365	0.60264	0.000347	575.7927763176012	76.23	1.0148	76.269	76.108	77.123	0.03923					57	39	2	0	0	0	0.031665	2	18318	18201;18318		49.933	29.479	1	379750			19914	3854	13194	13327	26824;26825	26825					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2924194335938	2	575.792589	1149.57063	0.45279	0.00026071	-1.24	-0.00071399	-0.78723	-0.00045328	575.7922024398792	78.1	1.2039	78.13	77.583	78.787	0.030159					84	41	3	0	0	0	0.22344	1	18692	18692		15.847	4.3525	1	338100			19915	3854	13194	13327	26826	26826					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7937622070312	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.885	1	75.929	75.429	76.429	0.044037								0	0	0	0.027871	1	18046	18046		58.679	24.576	1				19916	3854	13194	13327	26827	26827					0.0018230589485028759
SYIEIDEIV	9	Unmodified	_SYIEIDEIV_					0	0	0		tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2770385742188	2	540.776605	1079.53866	0.036957	1.9986E-05	1.713	0.00092633	1.7499	0.00094631	541.2785122395283	72.647	1.0553	72.647	72.258	73.313	0					106	36	5	0	0	0	0.17247	1	17198	17198		21.747	0.87544	1	1446300			19917	13465	13195	13328	26828	26828					0.00206893421022869
SYIELPAYL	9	Unmodified	_SYIELPAYL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.78466796875	2	534.784233	1067.55391	0.71863	0.00038431	-0.039779	-2.1273E-05	0.67885	0.00036304	534.784289227012	85.08	0.62176	85.08	84.838	85.459	0					51	21	4	0	0	0	0.002317	1	21001	21001		92.822	52.865	1	547410			19918	3831	13196	13329	26829	26829					0.02283805008892159
SYIELPAYL	9	Unmodified	_SYIELPAYL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7845458984375	2	534.784233	1067.55391	0.87845	0.00046978	-0.27628	-0.00014775	0.60218	0.00032203	534.7841222976042	85.051	0.56213	85.074	84.877	85.439	0.023132					62	22	4	0	0	0	0.0045547	2	20830	20830;20875		88.904	50.93	1	577890			19919	3831	13196	13329	26830;26831	26830					0.02283805008892159
SYIFMPFSF	9	Oxidation (M)	_SYIFM(Oxidation (M))PFSF_		SYIFM(1)PFSF		SYIFM(59)PFSF	0	0	1		nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7651977539062	2	577.764986	1153.51542	0.41328	0.00023878	-0.10869	-6.2798E-05	0.30459	0.00017598	577.7648230325788	94.47	0.68321	94.47	94.315	94.998	0					59	27	3	0	0	0	0.01943	1	23885	23885		58.679	41.737	1	335460			19920	5301	13197	13330	26832	26832		300			-0.05519823897270726
SYIFMPFSF	9	Oxidation (M)	_SYIFM(Oxidation (M))PFSF_		SYIFM(1)PFSF		SYIFM(59)PFSF	0	0	1		nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7648315429688	2	577.764986	1153.51542	0.39247	0.00022676	-0.49021	-0.00028322	-0.097736	-5.6468E-05	577.7645308327926	96.172	0.96256	96.172	95.909	96.872	0					82	47	2	0	0	0	0.01943	1	24421	24421		58.679	42.53	1	352050			19921	5301	13197	13330	26833	26833		300			-0.05519823897270726
SYIFMPFSF	9	Oxidation (M)	_SYIFM(Oxidation (M))PFSF_		SYIFM(1)PFSF		SYIFM(65)PFSF	0	0	1		nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7649536132812	2	577.764986	1153.51542	0.37882	0.00021887	0.19736	0.00011403	0.57618	0.0003329	577.7649299067731	94.518	0.56724	94.556	94.32	94.887	0.038086					53	22	3	0	0	0	0.01063	2	23688	23688;23735		65.235	50.397	1	336670			19922	5301	13197	13330	26834;26835	26834		300			-0.05519823897270726
SYIFMPFSF	9	Oxidation (M)	_SYIFM(Oxidation (M))PFSF_		SYIFM(1)PFSF		SYIFM(59)PFSF	0	0	1		nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7648315429688	2	577.764986	1153.51542	0.43873	0.00025348	-0.80974	-0.00046784	-0.37101	-0.00021436	577.7646024254327	96.307	0.93327	96.346	95.907	96.841	0.039772					84	49	3	0	0	0	0.055474	1	24209	24209		58.679	45.636	1	259180			19923	5301	13197	13330	26836	26836		300			-0.05519823897270726
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3245849609375	2	599.324391	1196.63423	0.083825	5.0239E-05	1.2295	0.00073684	1.3133	0.00078708	599.3248282231349	59.098	0.74971	59.098	58.931	59.68	0					66	28	3	0	0	0	0.032194	3	13101	13056;13101;13156		49.554	34.716	1	510050			19924	1964	13198	13331	26837;26838;26839	26838					0.0437771112262908
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3245239257812	2	599.324391	1196.63423	0.16818	0.00010079	0.56307	0.00033746	0.73125	0.00043826	599.3247751653162	58.948	0.6246	59.019	58.83	59.455	0.070477					52	24	3	0	0	0	0.0089808	4	12895	12895;12937;12951;13019		70.332	44.064	1	499850			19925	1964	13198	13331	26840;26841;26842;26843	26840					0.0437771112262908
SYIINLIIE	9	Unmodified	_SYIINLIIE_					0	0	0			REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7687377929688	2	539.313158	1076.61176	0.53306	0.00028749	0.80483	0.00043405	1.3379	0.00072154	539.3131565047562	86.193	0.55455	86.218	85.982	86.537	0.025169					44	20	3	0	0	0	0.19558	1	21209	21209		26.268	2.4784	1	141810	+		19926	13262	13199	13332	26844	26844					0.07652066934338109
SYIKSSSSL	9	Unmodified	_SYIKSSSSL_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2557067871094	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.656	1	33.656	33.156	34.156	0								0	0	0	0.25287	1	5383	5383		8.7454	0.15213	1				19927	4988	13200	13333	26845	26845					0.01069757452387421
SYIKVFLAL	9	Unmodified	_SYIKVFLAL_					0	0	0		nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7730712890625	2	527.320786	1052.62702	0.31567	0.00016646	-0.25112	-0.00013242	0.064557	3.4042E-05	527.3205726266584	76.761	0.39326	76.761	76.615	77.008	0					22	13	2	0	0	0	0.19558	1	18496	18496		26.268	4.5215	1	151340			19928	3506	13201	13334	26846	26846					0.10280978522177975
SYIKVFLAL	9	Unmodified	_SYIKVFLAL_					0	0	0		nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.773193359375	2	527.320786	1052.62702	0.32284	0.00017024	-0.18182	-9.588E-05	0.14101	7.4358E-05	527.3205884442451	76.773	0.35684	76.812	76.639	76.996	0.03923					24	12	2	0	0	0	0.19558	1	18332	18332		26.268	10.421	1	227040			19929	3506	13201	13334	26847	26847					0.10280978522177975
SYILDTLVF	9	Unmodified	_SYILDTLVF_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7922973632812	2	535.792058	1069.56956	0.42395	0.00022715	0.11943	6.3991E-05	0.54338	0.00029114	535.792047297704	94.696	0.95712	94.696	94.371	95.328	0					105	40	4	0	0	0	3.0281E-09	1	23934	23934		171.47	93.318	1	2016000			19930	1478	13202	13335	26848	26848					0.03756091525951888
SYILDTLVF	9	Unmodified	_SYILDTLVF_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7922973632812	2	535.792058	1069.56956	0.53737	0.00028792	0.049184	2.6352E-05	0.58656	0.00031427	535.7919934379664	94.602	1.0851	94.641	94.343	95.428	0.038086					113	44	4	0	0	0	3.0281E-09	1	23740	23740		171.47	100.33	1	2093400			19931	1478	13202	13335	26849	26849					0.03756091525951888
SYILENNEL	9	Unmodified	_SYILENNEL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.3336791992188	2	547.771854	1093.52915	0.34591	0.00018948	-0.94564	-0.00051799	-0.59973	-0.00032852	547.7714831663648	94.61	0.40999	94.648	94.452	94.862	0.038094					29	16	2	0	0	0	0.23975	1	23778	23778		14.838	2.3067	1	68371			19932	2579	13203	13336	26850	26850					-0.013868748644881634
SYILQKSTF	9	Unmodified	_SYILQKSTF_					0	0	0		BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2	BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant	BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.79541015625	2	543.795132	1085.57571	0.2151	0.00011697	-0.056319	-3.0626E-05	0.15878	8.6345E-05	543.7951191611819	49.651	0.92363	49.651	49.34	50.264	0					55	32	3	0	0	0	0.10802	1	10231	10231		30.703	12.33	1	125740			19933	92	13204	13337	26851	26851					0.036346097574551095
SYILQKSTF	9	Unmodified	_SYILQKSTF_					0	0	0		BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2	BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant	BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	543.795132	1085.57571	0.23357	0.00012701	-0.24048	-0.00013077	-0.0069068	-3.7559E-06	543.7950556242669	49.577	0.71701	49.654	49.384	50.101	0.076607	0.0014698	-0.00012713	NaN	30.703	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108170			19934	92	13204	13337							0.036346097574551095
SYILWALYA	9	Unmodified	_SYILWALYA_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2941284179688	2	550.294768	1098.57498	0.52688	0.00028994	-1.7696	-0.00097379	-1.2427	-0.00068385	550.2938212301527	94.074	0.21564	94.074	93.979	94.195	0					17	11	2	0	0	0	0.25209	1	23768	23768		12.532	1.7076	1	139180	+		19935	10594	13205	13338	26852	26852					0.029638151084327546
SYILWALYA	9	Unmodified	_SYILWALYA_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2931518554688	2	550.294768	1098.57498	0.49525	0.00027253	-2.3917	-0.0013162	-1.8965	-0.0010436	550.2934104984079	94.039	0.25224	94.077	93.997	94.25	0.038094					17	12	2	0	0	0	0.25209	1	23571	23571		12.532	1.7076	1	131600	+		19936	10594	13205	13338	26853	26853					0.029638151084327546
SYIMICNVLEE	11	Unmodified	_SYIMICNVLEE_					0	0	0		tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.5423889160156	3	438.542047	1312.60431	0.65471	0.00028712	-0.043192	-1.8941E-05	0.61151	0.00026817	438.5420642789583	53.918	0.6604	53.918	53.711	54.371	0					71	23	4	0	0	0	0.3278	1	11508	11508		14.838	0	1	735550			19937	13615	13206	13339	26854	26854					-0.039487767199261725
SYIMICNVLEE	11	Unmodified	_SYIMICNVLEE_					0	0	0		tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.5424499511719	3	438.542047	1312.60431	0.35779	0.0001569	0.38554	0.00016907	0.74333	0.00032598	438.5422381608708	53.91	0.70992	53.975	53.717	54.427	0.065128					75	26	5	0	0	0	0.36067	1	11365	11365		11.065	0	1	704890			19938	13615	13206	13339	26855	26855					-0.039487767199261725
SYIMICNVLEE	11	Unmodified	_SYIMICNVLEE_					0	0	0		tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	438.542047	1312.60431	0.35779	0.0001569	0.38554	0.00016907	0.74333	0.00032598	438.5422381608708	53.91	0.70992	53.975	53.717	54.427	0.065128	0.028896	0.00027261	NaN	14.838	75	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	704890			19939	13615	13206	13339							-0.039487767199261725
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3027954101562	2	539.302593	1076.59063	0.58249	0.00031414	-0.24117	-0.00013006	0.34132	0.00018407	539.3024492064442	92.303	1.0181	92.303	91.988	93.006	0					101	38	4	0	0	0	0.0044564	5	23205	23159;23205;23248;23296;23356		92.653	0	1	3561500			19940	4122	13207	13340	26856;26857;26858;26859;26860	26857					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3025512695312	2	539.302593	1076.59063	0.49493	0.00026692	-0.2716	-0.00014648	0.22333	0.00012044	539.3022553127838	94	0.70498	94	93.822	94.527	0					80	36	3	0	0	0	0.017478	5	23736	23682;23694;23736;23777;23827		60.074	0	1	932300			19941	4122	13207	13340	26861;26862;26863;26864;26865	26863					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3028564453125	2	539.302593	1076.59063	0.63243	0.00034107	-0.17352	-9.3579E-05	0.45891	0.00024749	539.3024244764739	92.246	0.84443	92.283	91.992	92.836	0.03653					91	29	5	0	0	0	0.0043658	5	23035	22982;22986;23035;23076;23129		96.111	0	1	2613600			19942	4122	13207	13340	26866;26867;26868;26869;26870	26868					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3026733398438	2	539.302593	1076.59063	0.54392	0.00029334	-0.38413	-0.00020716	0.15979	8.6175E-05	539.3022238047528	93.993	0.84388	94.031	93.767	94.611	0.038086					85	39	3	0	0	0	0.03472	4	23575	23531;23575;23618;23664		47.749	0	1	724450			19943	4122	13207	13340	26871;26872;26873;26874	26872					0.0554010162547911
SYIPLSGFVI	10	Unmodified	_SYIPLSGFVI_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7708740234375	2	548.307875	1094.6012	0.47738	0.00026175	-0.21777	-0.00011941	0.2596	0.00014234	548.307690822228	63.167	0.5772	63.24	63.099	63.676	0.072701					37	23	2	0	0	0	0.30541	1	14252	14252		13.906	3.8321	1	315760	+		19944	9911	13208	13341	26875	26875					0.05768084279907271
SYIPSTVFF	9	Unmodified	_SYIPSTVFF_					0	0	0		ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7713623046875	2	530.771126	1059.5277	0.54411	0.0002888	-0.25286	-0.00013421	0.29125	0.00015459	530.7711302851071	85.423	0.84852	85.423	84.957	85.806	0					66	34	3	0	0	0	0.0053304	2	21120	21093;21120		81.613	43.462	1	702770			19945	3031	13209	13342	26876;26877	26877					0.00031535837410956447
SYIPSTVFF	9	Unmodified	_SYIPSTVFF_					0	0	0		ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7713623046875	2	530.771126	1059.5277	0.72192	0.00038318	-0.59302	-0.00031476	0.1289	6.8415E-05	530.7709896482137	85.357	0.86163	85.38	85.035	85.897	0.023125					81	34	4	0	0	0	0.0032694	3	20952	20934;20952;21001		108	54.421	1	657550			19946	3031	13209	13342	26878;26879;26880	26879					0.00031535837410956447
SYIRQQSLH	9	Unmodified	_SYIRQQSLH_					0	0	0			REV__ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant	REV__ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7897338867188	2	566.298904	1130.58326	0.14435	8.1747E-05	2.6093	0.0014777	2.7537	0.0015594	566.3005344710621	53.098	0.27815	53.098	53.036	53.314	0					15	11	2	0	0	0	0.24767	1	11276	11276		13.042	2.9685	1	54984	+		19947	10125	13210	13343	26881	26881					0.023187620777662232
SYIRVAVSL	9	Unmodified	_SYIRVAVSL_					0	0	0		nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;ENST00000545477.1_1_6:142630681-142703096:+|nuORF;ENST00000415128.6_1_6:142623466-142692070:+|nuORF	nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENST00000415128.6_1_6:142623466-142692070:+|nuORF	nc|ENSG00000112414|Q86SQ4-4|ADGRG6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2977294921875	2	504.297842	1006.58113	0.13576	6.8463E-05	0.14659	7.3925E-05	0.28235	0.00014239	504.2978002545662	59.094	0.62586	59.165	58.995	59.621	0.070477					58	24	3	0	0	0	0.037699	1	12936	12936		46.022	6.0726	1	468760			19948	1759;6413	13211	13344	26882	26882					0.0781033333993264
SYIRVAVSL	9	Unmodified	_SYIRVAVSL_					0	0	0		nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;ENST00000545477.1_1_6:142630681-142703096:+|nuORF;ENST00000415128.6_1_6:142623466-142692070:+|nuORF	nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENST00000415128.6_1_6:142623466-142692070:+|nuORF	nc|ENSG00000112414|Q86SQ4-4|ADGRG6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	504.297842	1006.58113	0.011103	5.599E-06	0.26164	0.00013194	0.27274	0.00013754	504.29790770224383	59.201	0.83092	59.201	58.979	59.81	0	0.017893	4.181E-05	NaN	46.022	63	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	599430			19949	1759;6413	13211	13344							0.0781033333993264
SYISRTCGPI	10	Unmodified	_SYISRTCGPI_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3052978515625	2	548.776416	1095.53828	0.56176	0.00030828	-4.0612	-0.0022287	-3.4995	-0.0019204	548.7742067821044	68.153	0.29468	68.216	68.089	68.383	0.063499					16	10	2	0	0	0	0.31773	1	15714	15714		4.897	0.95262	1	43835	+		19950	7980	13212	13345	26883	26883					-0.0056680477980535215
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.28564453125	2	541.285463	1080.55637	0.28169	0.00015247	-0.14747	-7.9822E-05	0.13422	7.265E-05	541.2853690894257	37.025	1.4629	37.025	36.776	38.239	0					150	53	5	0	0	0	9.6107E-13	5	6413	6370;6413;6461;6505;6601		181.69	102.09	1	1669500			19951	3518	13213	13346	26884;26885;26886;26887;26888	26885					0.01931653466544958
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.28564453125	2	541.285463	1080.55637	0.37033	0.00020045	-0.14397	-7.7929E-05	0.22636	0.00012252	541.2853445984626	36.929	1.3874	37.01	36.79	38.177	0.081715					136	51	5	0	0	0	4.6221E-09	5	6258	6215;6258;6299;6342;6392		168.54	88.941	1	1487600			19952	3518	13213	13346	26889;26890;26891;26892;26893	26890					0.01931653466544958
SYITEECLKKL	11	Unmodified	_SYITEECLKKL_					0	0	0		nc|ENSG00000009335|Q15386-3|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.9045104980469	3	442.903973	1325.69009	0.6707	0.00029706	-0.39298	-0.00017405	0.27772	0.000123	442.9037916438112	53.953	0.64077	53.953	53.76	54.401	0					54	22	3	0	0	0	0.36067	1	11503	11503		11.065	3.2192	1	299430			19953	403	13214	13347	26894	26894					0.040271314572237316
SYITEECLKKL	11	Unmodified	_SYITEECLKKL_					0	0	0		nc|ENSG00000009335|Q15386-3|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.90362548828125	3	442.903973	1325.69009	0.38324	0.00016974	-0.2143	-9.4915E-05	0.16893	7.4822E-05	442.90377810478265	53.945	0.63277	54.01	53.815	54.448	0.065128					55	23	3	0	0	0	0.3278	1	11395	11395		14.838	6.9919	1	254540			19954	403	13214	13347	26895	26895					0.040271314572237316
SYIVSILFF	9	Unmodified	_SYIVSILFF_					0	0	0		ENST00000497787.1_1_1:151379381-151379546:-|nuORF	ENST00000497787.1_1_1:151379381-151379546:-|nuORF	ENST00000497787.1_1_1:151379381-151379546:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2849731445312	2	544.804968	1087.59538	0.82648	0.00045027	-2.7905	-0.0015203	-1.964	-0.00107	544.8034567635049	81.282	0.75978	81.282	80.674	81.434	0					32	25	2	0	0	0	0.2298	1	19729	19729		16.942	2.3606	1	111800			19955	6848	13215	13348	26896	26896					0.05508985768233288
SYIYLTVSF	9	Unmodified	_SYIYLTVSF_					0	0	0		ENST00000308488.10_1_11:77375811-77375982:-|nuORF	ENST00000308488.10_1_11:77375811-77375982:-|nuORF	ENST00000308488.10_1_11:77375811-77375982:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7841796875	2	546.784233	1091.55391	0.32288	0.00017654	-1.7074	-0.00093356	-1.3845	-0.00075701	546.7834872473356	94.602	0.67174	94.64	94.37	95.042	0.038086					76	27	4	0	0	0	0.12809	1	23722	23722		26.884	1.4843	1	456030			19956	5991	13216	13349	26897	26897					0.011798050089055323
SYIYLTVSF	9	Unmodified	_SYIYLTVSF_					0	0	0		ENST00000308488.10_1_11:77375811-77375982:-|nuORF	ENST00000308488.10_1_11:77375811-77375982:-|nuORF	ENST00000308488.10_1_11:77375811-77375982:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	546.784233	1091.55391	0.38913	0.00021277	-1.8613	-0.0010177	-1.4722	-0.00080495	546.7833226167778	94.682	0.6555	94.682	94.371	95.026	0	0.020701	-7.5534E-05	NaN	26.884	70	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369670			19957	5991	13216	13349							0.011798050089055323
SYKDRQII	8	Unmodified	_SYKDRQII_					0	0	0		ENSG00000175664|ENST00000380473|TEX26	ENSG00000175664|ENST00000380473|TEX26	ENSG00000175664|ENST00000380473|TEX26	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.78521728515625	2	511.785099	1021.55564	0.20603	0.00010544	-0.0432	-2.2109E-05	0.16283	8.3333E-05	511.784821541665	60.209	0.56112	60.283	60.017	60.578	0.073421					43	19	3	0	0	0	0.3576	1	13292	13292		6.7232	2.3939	1	174100			19958	4635	13217	13350	26898	26898					0.04572858817527958
SYKIKQQTI	9	Unmodified	_SYKIKQQTI_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.8212890625	2	554.821681	1107.62881	0.7294	0.00040469	-0.19305	-0.00010711	0.53635	0.00029758	554.8214891873703	54.717	1.497	54.717	54.538	56.035	0					146	57	4	0	0	0	0.24767	1	11988	11988		13.042	0.80181	1	4114700	+		19959	9611	13218	13351	26899	26899					0.07929987540137517
SYKTEFEL	8	Unmodified	_SYKTEFEL_					0	0	0		tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1	tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1	tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7503356933594	2	508.75039	1015.48623	0.54953	0.00027957	-1.4176	-0.0007212	-0.86806	-0.00044163	508.75007169047996	70.843	1.0486	70.901	70.33	71.378	0.058578					66	39	3	0	0	0	0.40691	1	16538	16538		25.399	4.9457	1	197230			19960	13456	13219	13352	26900	26900					-0.020896449218980706
SYKTQDATL	9	Unmodified	_SYKTQDATL_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7593994140625	2	513.758746	1025.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.485	1	61.485	60.985	61.985	0								0	0	0	0.24978	1	13809	13809		9.3831	1.473	1		+		19961	10003	13220	13353	26901	26901					-0.008791440359573244
SYLCNVTLF	9	Unmodified	_SYLCNVTLF_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2632446289062	2	530.26261	1058.51067	0.48867	0.00025912	-0.44026	-0.00023345	0.048405	2.5668E-05	530.2623504381837	85.959	0.71649	85.984	85.82	86.537	0.025169					35	26	2	0	0	0	0.048027	1	21118	21118		43.772	9.3707	1	130900			19962	3579	13221	13354	26902	26902					-0.016247080400262348
SYLCNVTLF	9	Unmodified	_SYLCNVTLF_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	530.26261	1058.51067	0.31951	0.00016942	-0.095209	-5.0486E-05	0.2243	0.00011894	530.2624189695225	86.072	0.50776	86.072	85.806	86.313	0	0.043781	0.00018169	NaN	43.772	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106300			19963	3579	13221	13354							-0.016247080400262348
SYLDEDVNY	9	Unmodified	_SYLDEDVNY_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.766845703125	2	559.237844	1116.46113	0.60296	0.0003372	-0.83287	-0.00046577	-0.22991	-0.00012858	559.2372228828824	82.559	0.45947	82.559	82.364	82.823	0					26	15	2	0	0	0	0.23598	1	20225	20225		15.847	1.9411	1	122830			19964	3361	13222	13355	26903	26903					-0.09243744515129038
SYLDEDVNY	9	Unmodified	_SYLDEDVNY_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7669677734375	2	559.237844	1116.46113	0.47496	0.00026561	-1.014	-0.00056709	-0.53908	-0.00030147	559.2373298015654	82.519	0.33679	82.541	82.398	82.735	0.021744					20	11	2	0	0	0	0.23598	1	20065	20065		15.847	5.0233	1	129560			19965	3361	13222	13355	26904	26904					-0.09243744515129038
SYLDNFIKI	9	Unmodified	_SYLDNFIKI_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.80322265625	2	556.802957	1111.59136	0.50521	0.0002813	0.31453	0.00017513	0.81974	0.00045644	556.8032646042097	76.254	0.6215	76.254	76.081	76.702	0					53	25	3	0	0	0	0.0034159	1	18339	18339		107.1	53.267	1	2025400			19966	2478	13223	13356	26905	26905					0.040028962745282115
SYLDNFIKI	9	Unmodified	_SYLDNFIKI_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.8034057617188	2	556.802957	1111.59136	0.59933	0.00033371	0.54334	0.00030254	1.1427	0.00063624	556.8033781502454	76.151	0.51011	76.19	76.068	76.578	0.03923					52	22	3	0	0	0	0.00046066	1	18141	18141		132.38	74.658	1	1959800			19967	2478	13223	13356	26906	26906					0.040028962745282115
SYLDQVKLQF	10	Unmodified	_SYLDQVKLQF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.8323364257812	2	620.832246	1239.64994	-0.0074584	-4.6304E-06	-0.15231	-9.4561E-05	-0.15977	-9.9191E-05	620.832030871252	71.43	0.46122	71.43	71.239	71.701	0					32	15	3	0	0	0	0.016485	1	16846	16846		70.929	44.661	1	358610			19968	4336	13224	13357	26907	26907					0.039699528490018565
SYLDQVKLQF	10	Unmodified	_SYLDQVKLQF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.8314819335938	2	620.832246	1239.64994	0.10788	6.6973E-05	-0.070343	-4.3671E-05	0.037534	2.3302E-05	620.8318912374883	71.368	0.49667	71.427	71.183	71.68	0.058578					34	17	3	0	0	0	0.0034669	2	16655	16655;16674		81.915	60.378	1	265270			19969	4336	13224	13357	26908;26909	26908					0.039699528490018565
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7827758789062	2	562.782753	1123.55095	-0.030453	-1.7138E-05	-0.14487	-8.1531E-05	-0.17532	-9.8669E-05	562.7827389784783	45.956	0.74255	45.956	45.729	46.472	0					70	25	4	0	0	0	0.00069152	2	9073	9073;9122		128.57	72.396	1	1564000			19970	679	13225	13358	26910;26911	26910					-0.005880701158957891
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7827758789062	2	562.782753	1123.55095	0.11886	6.6895E-05	-0.29443	-0.0001657	-0.17557	-9.8806E-05	562.7827222710769	45.87	0.65324	45.956	45.773	46.426	0.085617					65	24	4	0	0	0	0.0016629	4	8965	8904;8922;8965;9014		117.84	67.905	1	1358700			19971	679	13225	13358	26912;26913;26914;26915	26914					-0.005880701158957891
SYLDSIHFF	9	Unmodified	_SYLDSIHFF_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.I1431V|1|0.34|ENSG00000005339|chr16:3738662-3738662|T/C|missense_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7720336914062	2	564.771657	1127.52876	0.24831	0.00014024	0.60482	0.00034159	0.85313	0.00048183	564.7718125929491	78.941	0.86024	78.941	78.73	79.59	0					78	29	4	0	0	0	0.0012363	1	19149	19149		120.45	69.595	1	2208300			19972	350	13226	13359	26916	26916					-0.029902497936518557
SYLDSIHFF	9	Unmodified	_SYLDSIHFF_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.I1431V|1|0.34|ENSG00000005339|chr16:3738662-3738662|T/C|missense_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.772216796875	2	564.771657	1127.52876	0.28228	0.00015942	0.52642	0.00029731	0.8087	0.00045673	564.7717440185348	78.931	0.79189	78.961	78.759	79.551	0.030151					79	27	4	0	0	0	0.00038046	1	18974	18974		133.7	89.93	1	2057100			19973	350	13226	13359	26917	26917					-0.029902497936518557
SYLDSVHFF	9	Unmodified	_SYLDSVHFF_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant;EP300|p.V1393_I1395dup|1|0.23|ENSG00000100393|chr22:41169505-41169506|-/AGTATACAT|inframe_insertion	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.292236328125	2	557.763832	1113.51311	0.39673	0.00022128	0.12588	7.0211E-05	0.52261	0.00029149	557.7636889758356	74.189	0.5974	74.189	74.006	74.604	0					48	22	3	0	0	0	0.0048556	1	17687	17687		88.904	60.417	1	547180			19974	1195	13227	13360	26918	26918					-0.03910536310718271
SYLDSVHFF	9	Unmodified	_SYLDSVHFF_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant;EP300|p.V1393_I1395dup|1|0.23|ENSG00000100393|chr22:41169505-41169506|-/AGTATACAT|inframe_insertion	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2921142578125	2	557.763832	1113.51311	0.64069	0.00035736	-0.035448	-1.9772E-05	0.60525	0.00033758	557.76359412194	74.162	0.57716	74.211	74.016	74.593	0.048546					43	20	3	0	0	0	0.0011398	1	17524	17524		96.285	67.798	1	619050			19975	1195	13227	13360	26919	26919					-0.03910536310718271
SYLDVKGNHF	10	Unmodified	_SYLDVKGNHF_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2931518554688	2	590.293288	1178.57202	-0.02854	-1.6847E-05	0.12305	7.2636E-05	0.094511	5.5789E-05	590.293336913224	42.646	0.18107	42.735	42.678	42.86	0.089764					10	6	2	0	0	0	0.36848	2	7982	7972;7982		15.248	9.5166	1	33204			19976	4440	13228	13361	26920;26921	26921					-0.01012060016387295
SYLEHKTSMN	10	Unmodified	_SYLEHKTSMN_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76198560-76243086:+|nuORF;nc|ENSG00000119685|Q6EMB2-2|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.2832641601562	2	605.282063	1208.54957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.09	1	105.12	104.62	105.62	0.034004								0	0	0	0.3332	1	26882	26882		8.1555	0	1				19977	2081	13229	13362	26922	26922					-0.04636027476317395
SYLEKQVVTF	10	Unmodified	_SYLEKQVVTF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.3264770507812	2	607.326796	1212.63904	0.42161	0.00025605	-0.27668	-0.00016803	0.14493	8.8018E-05	607.3264666757248	56.68	0.64864	56.68	56.512	57.16	0					49	23	3	0	0	0	0.051426	1	12341	12341		57.249	25.981	1	467540			19978	466	13230	13363	26923	26923					0.04122550474698983
SYLEKQVVTF	10	Unmodified	_SYLEKQVVTF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.32666015625	2	607.326796	1212.63904	0.63263	0.00038421	-0.39891	-0.00024227	0.23372	0.00014195	607.3264963441198	56.635	0.54412	56.702	56.522	57.066	0.066452					41	19	3	0	0	0	0.011931	1	12218	12218		74.772	42.734	1	494430			19979	466	13230	13363	26924	26924					0.04122550474698983
SYLEKVRAL	9	Unmodified	_SYLEKVRAL_					0	0	0		ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171401|P13646-2|KRT13;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8163452148438	2	539.816399	1077.61824	-0.085945	-4.6394E-05	-0.32895	-0.00017757	-0.41489	-0.00022397	539.8161657751408	43.875	0.34277	43.875	43.773	44.116	0					17	11	2	0	0	0	0.2125	1	8495	8495		17.113	9.8237	1	64068		+	19980	210	13231	13364	26925	26925					0.0825400488570267
SYLELVKSL	9	Unmodified	_SYLELVKSL_					0	0	0		nc|ENSG00000143252|Q99643-5|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;ENSG00000143252|ENST00000367975|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.3048706054688	2	526.305332	1050.59611	0.48467	0.00025509	-0.14149	-7.4469E-05	0.34318	0.00018062	526.3052277053334	69.294	0.4141	69.294	69.104	69.518	0					27	14	3	0	0	0	0.0044228	1	16192	16192		93.938	38.435	1	318410			19981	3143	13232	13365	26926	26926					0.07283780417287744
SYLELVKSL	9	Unmodified	_SYLELVKSL_					0	0	0		nc|ENSG00000143252|Q99643-5|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;ENSG00000143252|ENST00000367975|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3056640625	2	526.305332	1050.59611	0.11052	5.8166E-05	0.2581	0.00013584	0.36862	0.00019401	527.3081597707225	69.173	0.25201	69.235	69.168	69.42	0.062126					26	9	3	0	0	0	0.0046695	1	16028	16028		84.522	32.892	1	255760			19982	3143	13232	13365	26927	26927					0.07283780417287744
SYLENLENLF	10	Unmodified	_SYLENLENLF_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.306396484375	2	621.306061	1240.59757	0.0058176	3.6145E-06	1.0689	0.00066414	1.0748	0.00066775	621.306820568946	94.496	0.22942	94.496	94.426	94.656	0					17	10	2	0	0	0	0.044868	4	23894	23872;23894;23900;23907		59.052	21.027	1	88883			19983	4784	13233	13366	26928;26929;26930;26931	26929					-0.013106302846153994
SYLENLENLF	10	Unmodified	_SYLENLENLF_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3064575195312	2	621.306061	1240.59757	0.044279	2.7511E-05	0.14054	8.7316E-05	0.18482	0.00011483	621.3056637301315	94.563	0.40999	94.601	94.452	94.862	0.038086					25	16	2	0	0	0	0.030989	2	23728	23715;23728		62.869	24.254	1	206470			19984	4784	13233	13366	26932;26933	26933					-0.013106302846153994
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.257080078125	2	562.256371	1122.49819	0.5514	0.00031003	-1.5692	-0.0008823	-1.0178	-0.00057228	562.2554612612038	55.137	1.1766	55.137	54.573	55.749	0					131	44	5	0	0	0	1.5265E-05	3	11894	11851;11894;11942		143.91	111.6	1	573060			19985	1592	13234	13367	26934;26935;26936	26935					-0.058160281787195345
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2568969726562	2	562.256371	1122.49819	0.56483	0.00031758	0.11394	6.4065E-05	0.67877	0.00038164	562.2564406185509	55.186	0.5575	55.251	55.089	55.646	0.065128					39	20	3	0	0	0	0.0016755	2	11746	11746;11789		117.76	96.889	1	467680			19986	1592	13234	13367	26937;26938	26937					-0.058160281787195345
SYLERHGLINF	11	Unmodified	_SYLERHGLINF_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2381896972656	3	450.238455	1347.69353	0.65923	0.00029681	-0.63616	-0.00028642	0.023069	1.0386E-05	450.2381184394347	55.117	0.68985	55.117	54.918	55.608	0					49	24	3	0	0	0	0.3278	2	11879	11879;11934		14.838	10.432	1	267690			19987	334	13235	13368	26939;26940	26939					0.033595623461451396
SYLERHGLINF	11	Unmodified	_SYLERHGLINF_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.2381591796875	3	450.238455	1347.69353	0.41075	0.00018493	-0.53124	-0.00023918	-0.12049	-5.425E-05	450.2381629465421	55.125	0.45889	55.19	55.032	55.491	0.065128					41	17	3	0	0	0	0.38258	2	11733	11733;11778		8.2864	5.2142	1	246160			19988	334	13235	13368	26941;26942	26941					0.033595623461451396
SYLEVLLKL	9	Unmodified	_SYLEVLLKL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3308715820312	2	539.33135	1076.64815	0.83456	0.0004501	-0.90089	-0.00048588	-0.06633	-3.5774E-05	539.3303842034039	84.471	0.31306	84.471	84.452	84.765	0					19	17	2	0	0	0	0.12214	1	20827	20827		27.629	12.791	1	450960			19989	3187	13236	13369	26943	26943					0.11288943831027609
SYLEVLLKL	9	Unmodified	_SYLEVLLKL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3313598632812	2	539.33135	1076.64815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.517	1	84.54	84.04	85.04	0.023125								0	0	0	0.23204	1	20677	20677		13.042	2.9685	1				19990	3187	13236	13369	26944	26944					0.11288943831027609
SYLEVLLKL	9	Unmodified	_SYLEVLLKL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	539.33135	1076.64815	0.72914	0.00039325	-0.15132	-8.161E-05	0.57783	0.00031164	539.3310441495246	84.797	0.11948	84.82	84.758	84.877	0.023125	0.17485	0.00028893	NaN	27.629	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108890			19991	3187	13236	13369							0.11288943831027609
SYLFCYSFF	9	Unmodified	_SYLFCYSFF_					0	0	0			REV__ENST00000265734.8_1_7:92242717-92242960:-|nuORF	REV__ENST00000265734.8_1_7:92242717-92242960:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2288208007812	2	588.757161	1175.49977	0.48018	0.00028271	-1.5045	-0.00088576	-1.0243	-0.00060304	588.756302096014	96.257	0.27067	96.257	96.028	96.299	0					14	11	2	0	0	0	0.23975	1	24416	24416		14.838	2.5976	1	79885	+		19992	11263	13237	13370	26945	26945					-0.08096110414339819
SYLGARAVIE	10	Unmodified	_SYLGARAVIE_					0	0	0		tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7984619140625	2	539.798206	1077.58186	0.25806	0.0001393	-1.5562	-0.00084001	-1.2981	-0.00070071	539.7983314613087	48.444	1.2929	48.444	48.159	49.452	0					116	44	4	0	0	0	0.14584	1	9870	9870		39.95	3.4435	1	1460300			19993	13667	13238	13371	26946	26946					0.0461712798901317
SYLHEVFEF	9	Unmodified	_SYLHEVFEF_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.7770385742188	2	585.776939	1169.53933	0.74052	0.00043378	-0.68637	-0.00040206	0.054152	3.1721E-05	585.7765243332852	69.592	0.54719	69.592	69.414	69.961	0					42	18	3	0	0	0	0.0045547	1	16283	16283		88.904	59.822	1	571160			19994	663	13239	13372	26947	26947					-0.038662671392330594
SYLHEVFEF	9	Unmodified	_SYLHEVFEF_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.7771606445312	2	585.776939	1169.53933	0.66843	0.00039155	-0.5598	-0.00032792	0.10862	6.363E-05	585.7766114574621	69.534	0.64735	69.596	69.387	70.034	0.062126					47	23	3	0	0	0	0.011655	1	16097	16097		64.236	44.979	1	533870			19995	663	13239	13372	26948	26948					-0.038662671392330594
SYLIGTNLF	9	Unmodified	_SYLIGTNLF_					0	0	0		nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1;ENSG00000036565|ENST00000276373|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2765502929688	2	514.276575	1026.5386	0.47594	0.00024476	-0.049532	-2.5473E-05	0.42641	0.00021929	514.2765374628895	83.114	0.47272	83.114	82.928	83.401	0					31	15	3	0	0	0	0.03918	1	20419	20419		45.7	0	1	279990			19996	520	13240	13373	26949	26949					0.026389382116803972
SYLIGTNLF	9	Unmodified	_SYLIGTNLF_					0	0	0		nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1;ENSG00000036565|ENST00000276373|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2764282226562	2	514.276575	1026.5386	0.3208	0.00016498	0.20928	0.00010763	0.53008	0.00027261	514.2765387514048	83.134	0.50842	83.156	82.931	83.44	0.021744					38	17	3	0	0	0	0.020768	2	20237	20237;20314		57.722	0	1	239190			19997	520	13240	13373	26950;26951	26950					0.026389382116803972
SYLITSVEL	9	Unmodified	_SYLITSVEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7818603515625	2	512.78169	1023.54883	0.29025	0.00014884	0.28209	0.00014465	0.57234	0.00029348	512.7817741236913	78.34	0.71736	78.34	78.097	78.815	0					68	24	4	0	0	0	0.0005281	5	18968	18924;18968;19016;19079;19096		131.27	93.294	1	1504800			19998	727	13241	13374	26952;26953;26954;26955;26956	26953					0.0379950114629537
SYLITSVEL	9	Unmodified	_SYLITSVEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7818603515625	2	512.78169	1023.54883	0.45699	0.00023433	0.069753	3.5768E-05	0.52674	0.0002701	512.7816561511552	78.298	0.65756	78.328	78.08	78.738	0.030159					70	22	4	0	0	0	0.0005281	3	18804	18757;18804;18860		131.27	80.921	1	1762300			19999	727	13241	13374	26957;26958;26959	26958					0.0379950114629537
SYLKDTKLW	9	Unmodified	_SYLKDTKLW_					0	0	0		ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24	ENSG00000102572|ENST00000539966|STK24	ENSG00000102572|ENST00000539966|STK24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.33447265625	2	577.316232	1152.61791	0.21403	0.00012356	0.2205	0.0001273	0.43453	0.00025086	577.3165982910174	49.1	0.3671	49.1	48.973	49.34	0					27	12	3	0	0	0	0.054729	1	10042	10042		42.312	16.913	1	98324			20000	1319	13242	13375	26960	26960					0.047705851658292886
SYLKDTKLW	9	Unmodified	_SYLKDTKLW_					0	0	0		ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24	ENSG00000102572|ENST00000539966|STK24	ENSG00000102572|ENST00000539966|STK24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.33447265625	2	577.316232	1152.61791	0.14416	8.3226E-05	0.50362	0.00029075	0.64778	0.00037398	577.3162792450248	49.011	0.3556	49.088	48.956	49.312	0.076603					25	12	3	0	0	0	0.071704	1	9883	9883		38.615	14.594	1	119040			20001	1319	13242	13375	26961	26961					0.047705851658292886
SYLKQLPHF	9	Unmodified	_SYLKQLPHF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8104248046875	2	566.811116	1131.60768	0.2228	0.00012628	-0.22585	-0.00012801	-0.00305	-1.7288E-06	566.8109393949231	51.634	0.58573	51.704	51.475	52.061	0.069878					35	20	3	0	0	0	0.15282	1	10708	10708		24.021	16.731	1	138630			20002	3192	13243	13376	26962	26962					0.04714022231269155
SYLKQLPHF	9	Unmodified	_SYLKQLPHF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	566.811116	1131.60768	0.11084	6.2823E-05	-0.046171	-2.617E-05	0.064665	3.6653E-05	566.8109678216779	51.755	0.51454	51.755	51.501	52.015	0	0.025408	7.8568E-05	NaN	24.021	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146470			20003	3192	13243	13376							0.04714022231269155
SYLLEPWFL	9	Unmodified	_SYLLEPWFL_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3084106445312	2	584.307875	1166.6012	0.33231	0.00019417	-0.036951	-2.1591E-05	0.29536	0.00017258	584.3077421335328	104.35	0.48289	104.35	104.04	104.53	0					100	46	3	0	0	0	0.14091	4	26837	26802;26837;26851;26873		25.399	15.855	1	287210			20004	740	13244	13377	26963;26964;26965;26966	26964					0.024560842798791782
SYLLEPWFL	9	Unmodified	_SYLLEPWFL_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3079223632812	2	584.307875	1166.6012	0.67605	0.00039502	-0.41362	-0.00024168	0.26243	0.00015334	584.307535656719	104.29	0.51844	104.32	104.06	104.57	0.03791					83	49	2	0	0	0	0.092418	2	26668	26629;26668		34.102	25.947	1	405020			20005	740	13244	13377	26967;26968	26968					0.024560842798791782
SYLLKLKVM	9	Unmodified	_SYLLKLKVM_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.291259765625	2	547.835746	1093.65694	0.54759	0.00029999	-3.7936	-0.0020783	-3.246	-0.0017783	548.3356008183234	70.698	0.46986	70.698	70.531	71.001	0					43	16	4	0	0	0	0.25051	1	16690	16690		7.9102	1.187	1	209850			20006	890	13245	13378	26969	26969					0.11385594195871818
SYLLMCLES	9	Unmodified	_SYLLMCLES_					0	0	0		ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	ENSG00000090863|ENST00000422840|GLG1	ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3021240234375	2	529.748479	1057.4824	0.46887	0.00024838	-3.8643	-0.0020471	-3.3954	-0.0017987	529.7463696863945	85.578	0.29723	85.578	85.482	85.779	0					18	14	2	0	0	0	0.23598	1	21208	21208		15.847	4.2069	1	44280			20007	1050	13246	13379	26970	26970					-0.04403774011643691
SYLLTYLSS	9	Unmodified	_SYLLTYLSS_					0	0	0		ENST00000511410.5_1_5:140021383-140021704:+|nuORF;ENST00000505086.2_1_5:140019102-140021704:+|nuORF;ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENSG00000113119|ENST00000394671|TMCO6;nc|ENSG00000113119|Q96DC7-2|TMCO6	ENST00000511410.5_1_5:140021383-140021704:+|nuORF	ENST00000511410.5_1_5:140021383-140021704:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7734985351562	2	523.773865	1045.53318	0.25216	0.00013208	-2.2226	-0.0011641	-1.9704	-0.001032	523.772742019048	78.324	0.49982	78.324	78.125	78.625	0					33	16	3	0	0	0	0.11547	2	18931	18931;18999		29.082	9.8246	1	269320			20008	1786	13247	13380	26971;26972	26971					0.012232146292262769
SYLNNELEN	9	Unmodified	_SYLNNELEN_					0	0	0		tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2509765625	2	548.251286	1094.48802	0.52806	0.00028951	-1.9833	-0.0010873	-1.4552	-0.00079784	548.2500561975872	92.197	0.69823	92.233	91.887	92.585	0.03653					48	24	3	0	0	0	0.32614	1	23002	23002		3.2813	0	1	149940			20009	13471	13248	13381	26973	26973					-0.05544635903947892
SYLNSFFQL	9	Unmodified	_SYLNSFFQL_					0	0	0		ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7800903320312	2	559.779482	1117.54441	0.5008	0.00028034	-0.72878	-0.00040796	-0.22798	-0.00012762	559.778629815071	91.45	0.81876	91.45	91.269	92.088	0					73	30	4	0	0	0	4.6221E-09	2	22929	22929;22977		168.54	107.18	1	608410			20010	4084	13249	13382	26974;26975	26974					-0.009659632766215509
SYLNSFFQL	9	Unmodified	_SYLNSFFQL_					0	0	0		ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7803344726562	2	559.779482	1117.54441	0.38408	0.000215	-0.5865	-0.00032831	-0.20242	-0.00011331	559.7787483278313	91.396	0.87923	91.431	91.197	92.076	0.035446					75	31	4	0	0	0	1.5265E-05	2	22758	22758;22808		143.91	82.552	1	555370			20011	4084	13249	13382	26976;26977	26976					-0.009659632766215509
SYLPAFKVF	9	Unmodified	_SYLPAFKVF_					0	0	0		nc|ENSG00000163754|P46976-2|GYG1;ENSG00000163754|ENST00000345003|GYG1	nc|ENSG00000163754|P46976-2|GYG1	nc|ENSG00000163754|P46976-2|GYG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.2984008789062	2	536.29731	1070.58007	0.11487	6.1606E-05	1.4983	0.00080353	1.6132	0.00086514	536.2981528064296	73.266	0.94682	73.266	72.973	73.92	0					56	33	2	0	0	0	0.026209	1	17388	17388		53.833	26.949	1	517600			20012	3941	13250	13383	26978	26978					0.04760118971034899
SYLPAFKVF	9	Unmodified	_SYLPAFKVF_					0	0	0		nc|ENSG00000163754|P46976-2|GYG1;ENSG00000163754|ENST00000345003|GYG1	nc|ENSG00000163754|P46976-2|GYG1	nc|ENSG00000163754|P46976-2|GYG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.29833984375	2	536.29731	1070.58007	0.41739	0.00022384	1.4643	0.0007853	1.8817	0.0010091	536.2980401263774	73.16	1.0953	73.213	72.897	73.992	0.052574					69	41	4	0	0	0	0.013982	1	17214	17214		62.573	34.086	1	475160			20013	3941	13250	13383	26979	26979					0.04760118971034899
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7614135742188	2	537.760758	1073.50696	0.47782	0.00025696	-1.5992	-0.00085998	-1.1214	-0.00060303	537.7609561263589	85.65	1.2462	85.65	85.339	86.585	0					147	51	5	0	0	0	2.1427E-17	5	21187	21148;21187;21226;21275;21333		196.65	145.79	1	5194000			20014	3825	13251	13384	26980;26981;26982;26983;26984	26981					-0.026850545422576033
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.76123046875	2	537.760758	1073.50696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.66	1	85.685	85.185	86.185	0.025169								0	0	0	1.7578E-36	1	21028	21028		196.65	145.79	1				20015	3825	13251	13384	26985	26985					-0.026850545422576033
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7611083984375	2	537.760758	1073.50696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.81	1	85.835	85.335	86.335	0.025169								0	0	0	1.8853E-27	1	21074	21074		180.01	131.66	1				20016	3825	13251	13384	26986	26986					-0.026850545422576033
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.760986328125	2	537.760758	1073.50696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.952	1	85.977	85.477	86.477	0.025169								0	0	0	3.8994E-09	1	21117	21117		123.45	83.493	1				20017	3825	13251	13384	26987	26987					-0.026850545422576033
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7617797851562	2	537.760758	1073.50696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.182	1	86.207	85.707	86.707	0.025169								0	0	0	0.072376	1	21187	21187		41.84	25.992	1				20018	3825	13251	13384	26988	26988					-0.026850545422576033
SYLPHAPPFA	10	Unmodified	_SYLPHAPPFA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7843017578125	2	550.282192	1098.54983	0.0040967	2.2543E-06	-2.14	-0.0011776	-2.1359	-0.0011753	550.280721300699	58.618	0.83711	58.618	58.256	59.093	0					72	30	4	0	0	0	0.007929	2	12903	12886;12903		78.149	51.266	1	519700			20019	4430	13252	13385	26989;26990	26990					0.004497603058553068
SYLPHAPPFA	10	Unmodified	_SYLPHAPPFA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2825317382812	2	550.282192	1098.54983	0.31919	0.00017564	-2.1862	-0.001203	-1.867	-0.0010274	550.2807316714956	58.551	0.81433	58.622	58.205	59.02	0.070477					70	28	3	0	0	0	0.016242	2	12723	12723;12765		71.134	47.113	1	473630			20020	4430	13252	13385	26991;26992	26991					0.004497603058553068
SYLPISPTF	9	Unmodified	_SYLPISPTF_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7714233398438	2	512.771126	1023.5277	0.66443	0.0003407	0.042109	2.1592E-05	0.70654	0.00036229	512.7710117584176	79.75	0.57307	79.75	79.536	80.109	0					44	19	3	0	0	0	0.02293	2	19378	19378;19425		56.177	22.075	1	285740			20021	1025	13253	13386	26993;26994	26993					0.016875358374363714
SYLPISPTF	9	Unmodified	_SYLPISPTF_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7713623046875	2	512.771126	1023.5277	0.38245	0.00019611	-0.15236	-7.8127E-05	0.23009	0.00011798	512.7711187393874	79.753	0.64066	79.779	79.437	80.078	0.026428					42	22	3	0	0	0	0.02293	2	19250	19198;19250		56.177	22.075	1	301530			20022	1025	13253	13386	26995;26996	26996					0.016875358374363714
SYLPLAHMF	9	Unmodified	_SYLPLAHMF_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7733154296875	2	539.773145	1077.53174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.646	1	72.646	72.146	73.146	0								0	0	0	0.0036488	1	17213	17213		77.984	54.836	1				20023	5278	13254	13387	26997	26997					-0.003926979405150632
SYLPLAHMF	9	Unmodified	_SYLPLAHMF_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7733764648438	2	539.773145	1077.53174	0.28936	0.00015619	0.49214	0.00026564	0.7815	0.00042183	539.7733495275227	72.62	0.75172	72.676	72.43	73.182	0.055939					44	25	2	0	0	0	0.0065046	1	17042	17042		77.984	59.849	1	763340			20024	5278	13254	13387	26998	26998					-0.003926979405150632
SYLPLAHMF	9	Oxidation (M)	_SYLPLAHM(Oxidation (M))F_		SYLPLAHM(1)F		SYLPLAHM(44)F	0	0	1		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3060302734375	2	547.770603	1093.52665	0.52762	0.00028901	-0.5738	-0.00031431	-0.046184	-2.5298E-05	547.7703079594373	60.278	0.85228	60.278	59.867	60.72	0					79	30	3	0	0	0	0.091303	1	13366	13366		44.407	33.583	1	944090			20025	5278	13254	13388	26999	26999		299			-0.016370018031238942
SYLPLAHMF	9	Oxidation (M)	_SYLPLAHM(Oxidation (M))F_		SYLPLAHM(1)F		SYLPLAHM(54)F	0	0	1		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3059692382812	2	547.770603	1093.52665	0.25137	0.00013769	-0.25171	-0.00013788	-0.00034762	-1.9042E-07	547.7705140087211	60.17	0.89329	60.243	59.825	60.718	0.07304					72	31	3	0	0	0	0.063247	1	13217	13217		53.576	37.728	1	896490			20026	5278	13254	13388	27000	27000		299			-0.016370018031238942
SYLPWFEVF	9	Unmodified	_SYLPWFEVF_					0	0	0		DENND1A-NDUFA8|1|fusion;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;DENND1A-ENG|1|fusion;nc|ENSG00000119522|Q8TEH3-5|DENND1A;DENND1A-ENG|2|fusion;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A	DENND1A-NDUFA8|1|fusion	DENND1A-NDUFA8|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.2921752929688	2	594.292225	1186.5699	0.046674	2.7738E-05	0.3821	0.00022708	0.42877	0.00025481	594.2923685636015	105.06	0.73926	105.06	104.88	105.62	0					113	75	2	0	0	0	0.0084662	3	27086	27052;27086;27122		71.922	56.075	1	562140			20027	273	13255	13389	27001;27002;27003	27002					-0.015924887542041688
SYLPWFEVF	9	Unmodified	_SYLPWFEVF_					0	0	0		DENND1A-NDUFA8|1|fusion;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;DENND1A-ENG|1|fusion;nc|ENSG00000119522|Q8TEH3-5|DENND1A;DENND1A-ENG|2|fusion;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A	DENND1A-NDUFA8|1|fusion	DENND1A-NDUFA8|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2923583984375	2	594.292225	1186.5699	0.25261	0.00015013	0.39365	0.00023395	0.64627	0.00038407	594.2922382588374	105.13	0.48604	105.16	104.91	105.4	0.034004					124	51	3	0	0	0	0.013982	1	26859	26859		62.573	46.726	1	436070			20028	273	13255	13389	27004	27004					-0.015924887542041688
SYLQGWVFS	9	Unmodified	_SYLQGWVFS_					0	0	0		ENST00000497039.1_1_2:65300018-65301213:+|nuORF	ENST00000497039.1_1_2:65300018-65301213:+|nuORF	ENST00000497039.1_1_2:65300018-65301213:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3234252929688	2	543.766374	1085.5182	0.31997	0.00017399	-0.26744	-0.00014542	0.052525	2.8562E-05	543.7661865016734	77.569	0.3933	77.569	77.413	77.807	0					24	14	2	0	0	0	0.24791	1	18778	18778		10.074	2.1638	1	218820			20029	6840	13256	13390	27005	27005					-0.021142324480933894
SYLQQNGVQN	10	Unmodified	_SYLQQNGVQN_					0	0	0		CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5;CUL5-ATM|1|fusion	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7929077148438	2	575.778002	1149.54145	0.21083	0.00012139	1.7388	0.0010012	1.9496	0.0011225	575.7790149099868	73.625	2.0703	73.625	73.541	75.611	0					129	76	2	0	0	0	0.38912	1	17908	17908		13.042	0	1	1497800			20030	259	13257	13391	27006	27006					-0.027338384014228723
SYLQQNGVQNY	11	Unmodified	_SYLQQNGVQNY_					0	0	0		CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5;CUL5-ATM|1|fusion	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.5423889160156	3	438.542203	1312.60478	0.65471	0.00028712	-0.39968	-0.00017528	0.25502	0.00011184	438.5420642789583	53.918	0.6604	53.918	53.711	54.371	0					71	23	4	0	0	0	0.39158	1	11560	11560		6.2344	0.83165	1	735550			20031	259	13258	13392	27007	27007					-0.039018976841816766
SYLQSLLLF	9	Unmodified	_SYLQSLLLF_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.3080444335938	2	542.307875	1082.6012	0.46161	0.00025033	0.054822	2.973E-05	0.51643	0.00028006	542.3078376894217	100.13	0.81664	100.13	99.887	100.7	0					138	44	5	0	0	0	7.6155E-09	4	25579	25536;25579;25622;25659		163.04	36.47	1	3003100			20032	2563	13259	13393	27008;27009;27010;27011	27009					0.06320084279900584
SYLQSLLLF	9	Unmodified	_SYLQSLLLF_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.30810546875	2	542.307875	1082.6012	0.57349	0.00031101	-0.074836	-4.0584E-05	0.49865	0.00027042	542.3077639735533	100.15	0.79804	100.19	99.913	100.71	0.042839					138	44	5	0	0	0	0.0022565	4	25411	25372;25411;25455;25498		114.2	21.548	1	2524100			20033	2563	13259	13393	27012;27013;27014;27015	27013					0.06320084279900584
SYLQYLEYL	9	Unmodified	_SYLQYLEYL_					0	0	0		nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5	nc|ENSG00000100462|O14744-2|PRMT5	nc|ENSG00000100462|O14744-2|PRMT5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.300537109375	2	596.300247	1190.58594	0.50986	0.00030403	0.049517	2.9527E-05	0.55938	0.00033356	596.3002483413699	92.912	1.191	92.912	92.579	93.77	0					138	45	5	0	0	0	4.8315E-24	6	23381	23341;23381;23423;23471;23535;23607		223.81	141.92	1	4809900			20034	1201	13260	13394	27016;27017;27018;27019;27020;27021	27017					-0.001728273079606879
SYLQYLEYL	9	Unmodified	_SYLQYLEYL_					0	0	0		nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5	nc|ENSG00000100462|O14744-2|PRMT5	nc|ENSG00000100462|O14744-2|PRMT5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.300537109375	2	596.300247	1190.58594	0.37124	0.00022137	0.13524	8.0642E-05	0.50647	0.00030201	596.3002770354511	92.783	1.2968	92.821	92.553	93.85	0.037369					145	51	5	0	0	0	4.8315E-24	4	23208	23160;23208;23251;23296		223.81	141.92	1	4187100			20035	1201	13260	13394	27022;27023;27024;27025	27023					-0.001728273079606879
SYLRMRKSR	9	Unmodified	_SYLRMRKSR_					0	0	0			REV__ENST00000521197.5_1_7:27191940-27192297:+|nuORF	REV__ENST00000521197.5_1_7:27191940-27192297:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3023071289062	2	598.837674	1195.66079	0.3972	0.00023786	2.3315	0.0013962	2.7287	0.0016341	598.8413870641971	79.305	0.2681	79.305	79.13	79.398	0					13	8	2	0	0	0	0.25644	1	19279	19279		3.9444	0.3479	1	47089	+		20036	12298	13261	13395	27026	27026					0.07079076742274992
SYLSRLQYF	9	Unmodified	_SYLSRLQYF_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8067016601562	2	588.806031	1175.59751	0.67117	0.00039519	-0.16367	-9.637E-05	0.5075	0.00029882	588.8058262761494	64.046	0.42881	64.117	63.886	64.315	0.071022					22	14	2	0	0	0	0.078774	1	14442	14442		37.075	24.032	1	167920			20037	3257	13262	13396	27027	27027					0.01673414506035442
SYLSRLQYF	9	Unmodified	_SYLSRLQYF_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	588.806031	1175.59751	0.6658	0.00039203	0.02981	1.7553E-05	0.69561	0.00040958	588.8060235447281	64.102	0.71258	64.102	63.92	64.632	0	-0.007731	0.00010203	NaN	37.075	30	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177600			20038	3257	13262	13396							0.01673414506035442
SYLSSILRF	9	Unmodified	_SYLSSILRF_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3027954101562	2	543.303124	1084.5917	0.35643	0.00019365	-0.22715	-0.00012341	0.12929	7.0242E-05	543.3029056624715	76.74	0.75713	76.74	76.523	77.28	0					78	27	5	0	0	0	1.7199E-05	2	18439	18439;18484		142.08	70.946	1	3422400			20039	4613	13263	13397	27028;27029	27028					0.05278315994382865
SYLSSILRF	9	Unmodified	_SYLSSILRF_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.3031616210938	2	543.303124	1084.5917	0.43681	0.00023732	-0.24889	-0.00013522	0.18792	0.0001021	543.3029157994968	76.736	0.6815	76.775	76.526	77.207	0.03923					77	24	5	0	0	0	1.7199E-05	3	18311	18259;18264;18311		142.08	70.946	1	3301700			20040	4613	13263	13397	27030;27031;27032	27032					0.05278315994382865
SYLTAFREAG	10	Unmodified	_SYLTAFREAG_					0	0	0			REV__ENSG00000149218|ENST00000278505|ENDOD1	REV__ENSG00000149218|ENST00000278505|ENDOD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.5777587890625	2	557.780013	1113.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.261	1	54.326	53.826	54.826	0.065128								0	0	0	0.33528	1	11473	11473		5.7319	2.4505	1		+		20041	9607	13264	13398	27033	27033					-0.006757489077244827
SYLTETVSDI	10	Unmodified	_SYLTETVSDI_					0	0	0			REV__ENSG00000215262|ENST00000399881|KCNU1	REV__ENSG00000215262|ENST00000399881|KCNU1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7587280273438	2	564.276969	1126.53938	0.80016	0.00045151	-0.89555	-0.00050534	-0.09539	-5.3826E-05	564.2766339550549	80.593	0.32951	80.593	80.513	80.843	0					15	11	2	0	0	0	0.30541	1	19635	19635		19.257	2.3147	1	85890	+		20042	11016	13265	13399	27034	27034					-0.018823119298986057
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.735107421875	2	464.73474	927.454927	0.25398	0.00011804	-0.00031837	-1.4796E-07	0.25367	0.00011789	464.7347572967667	56.488	0.48336	56.488	56.242	56.725	0					40	17	3	0	0	0	0.0010022	2	12266	12266;12317		123.45	52.317	1	399040			20043	1416	13266	13400	27035;27036	27035					-0.011702179559961223
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.73541259765625	2	464.73474	927.454927	0.031874	1.4813E-05	0.22556	0.00010482	0.25743	0.00011964	464.7347934147635	56.38	0.73384	56.447	56.28	57.014	0.066452					39	26	2	0	0	0	0.00022088	1	12117	12117		136.33	54.72	1	345600			20044	1416	13266	13400	27037	27037					-0.011702179559961223
SYLYGLLAF	9	Unmodified	_SYLYGLLAF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2897338867188	2	523.781493	1045.54843	0.47052	0.00024645	-0.21965	-0.00011505	0.25087	0.0001314	523.7811599564989	97.361	0.51973	97.402	97.112	97.632	0.040855					50	24	4	0	0	0	0.1182	1	24570	24570		28.487	12.64	1	149400			20045	1908	13267	13401	27038	27038					0.027481262171022536
SYLYSPYFG	9	Unmodified	_SYLYSPYFG_					0	0	0		ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7523193359375	2	548.752933	1095.49131	0.48443	0.00026583	-2.8328	-0.0015545	-2.3484	-0.0012887	548.7521044079532	85.642	0.84377	85.642	85.362	86.205	0					86	36	4	0	0	0	0.1478	1	21220	21220		34.102	8.7031	1	907020			20046	6207	13268	13402	27039	27039					-0.05261341059303959
SYLYSPYFG	9	Unmodified	_SYLYSPYFG_					0	0	0		ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7521362304688	2	548.752933	1095.49131	0.64229	0.00035246	-3.4129	-0.0018728	-2.7706	-0.0015204	548.7519452732429	85.634	0.73015	85.659	85.358	86.088	0.025169					64	28	3	0	0	0	0.12809	1	21020	21020		26.884	0.54238	1	740070			20047	6207	13268	13402	27040	27040					-0.05261341059303959
SYMFVDENTF	10	Oxidation (M)	_SYM(Oxidation (M))FVDENTF_		SYM(1)FVDENTF		SYM(50)FVDENTF	0	0	1		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.759765625	2	634.760629	1267.5067	0.40258	0.00025554	-0.48268	-0.00030638	-0.080095	-5.0841E-05	634.7603031064255	69.756	1.0677	69.756	69.379	70.447	0					77	38	3	0	0	0	0.079509	3	16272	16272;16321;16370		49.527	35.122	1	330280			20048	2679	13269	13403	27041;27042;27043	27041		172			-0.11634842324406236
SYMFVDENTF	10	Oxidation (M)	_SYM(Oxidation (M))FVDENTF_		SYM(1)FVDENTF		SYM(65)FVDENTF	0	0	1		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.7609252929688	2	634.760629	1267.5067	0.30131	0.00019126	-0.31506	-0.00019999	-0.013747	-8.7263E-06	634.7603117024992	69.632	1.0584	69.693	69.335	70.393	0.061447					82	41	3	0	0	0	0.022949	1	16156	16156		65.474	46.112	1	431590			20049	2679	13269	13403	27044	27044		172			-0.11634842324406236
SYMFVDENTF	10	Unmodified	_SYMFVDENTF_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.7626342773438	2	626.763171	1251.51179	0.15925	9.9815E-05	0.040956	2.567E-05	0.20021	0.00012548	626.7629717641859	76.64	0.2855	76.64	76.445	76.73	0					14	9	2	0	0	0	0.43214	1	18422	18422		8.1555	5.4203	1	102660			20050	2679	13269	13404	27045	27045					-0.10390538461774668
SYMFVDENTF	10	Unmodified	_SYMFVDENTF_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.7637329101562	2	626.763171	1251.51179	0.38902	0.00024382	-0.036409	-2.282E-05	0.35261	0.000221	627.2646348945913	76.488	0.27474	76.527	76.441	76.716	0.03923					11	9	2	0	0	0	0.37637	1	18243	18243		14.405	9.5084	1	87716			20051	2679	13269	13404	27046	27046					-0.10390538461774668
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(200)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7501831054688	2	549.749867	1097.48518	0.20599	0.00011324	0.080683	4.4355E-05	0.28668	0.0001576	549.750060305726	59.198	1.365	59.198	58.846	60.211	0					183	51	5	0	0	0	2.1427E-17	7	13109	13060;13109;13158;13204;13248;13298;13349		196.65	150.63	1	19158000			20052	4370	13270	13405	27047;27048;27049;27050;27051;27052;27053	27048		263			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(210)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7503662109375	2	549.749867	1097.48518	0.46828	0.00025744	-0.17876	-9.8272E-05	0.28952	0.00015917	549.7500058886422	60.741	5.7497	60.741	59.895	65.645	0					470	223	6	0	0	0	1.0888E-17	30	13608	13399;13439;13483;13524;13565;13608;13648;13692;13743;13794;13832;13876;13926;13971;14018;14062;14112;14208;14257;14301;14388;14436;14488;14538;14652;14720;14771;14860;14915;14976		205.38	159.36	1	19135000			20053	4370	13270	13405	27054;27055;27056;27057;27058;27059;27060;27061;27062;27063;27064;27065;27066;27067;27068;27069;27070;27071;27072;27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083	27059		263			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(42)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7493896484375	2	549.749867	1097.48518	0.81408	0.00044754	-2.1768	-0.0011967	-1.3627	-0.00074916	549.7485424865127	65.966	1.0784	65.966	65.761	66.84	0					60	40	2	0	0	0	0.05573	1	15352	15352		42.095	24.982	1	221120			20054	4370	13270	13405	27084	27084		263			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(200)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.75	2	549.749867	1097.48518	0.29726	0.00016342	-0.0068597	-3.7711E-06	0.2904	0.00015965	549.7499642295518	59.113	1.4034	59.184	58.804	60.208	0.070477					202	53	5	0	0	0	2.1427E-17	9	12934	12892;12934;12984;13031;13074;13117;13158;13199;13243		196.65	154.81	1	16995000			20055	4370	13270	13405	27085;27086;27087;27088;27089;27090;27091;27092;27093	27086		263			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(190)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.750244140625	2	549.749867	1097.48518	0.36306	0.00019959	-0.013507	-7.4257E-06	0.34955	0.00019217	549.7500373273303	60.759	5.6323	60.833	59.989	65.622	0.073421					448	223	5	0	0	0	4.8934E-13	23	13421	13283;13324;13370;13421;13461;13508;13553;13596;13638;13677;13722;13759;13801;13845;13890;14041;14087;14132;14334;14380;14712;14760;14823		188.58	146.74	1	15606000			20056	4370	13270	13405	27094;27095;27096;27097;27098;27099;27100;27101;27102;27103;27104;27105;27106;27107;27108;27109;27110;27111;27112;27113;27114;27115;27116	27097		263			-0.059661825624516496
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7529296875	2	541.75241	1081.49027	0.60946	0.00033018	0.036571	1.9812E-05	0.64603	0.00034999	541.7524569641399	67.111	2.3823	67.111	66.782	69.165	0					221	88	4	0	0	0	8.832E-06	7	15540	15481;15492;15540;15581;15633;15899;15948		149.99	112.02	1	9025400			20057	4370	13270	13406	27117;27118;27119;27120;27121;27122;27123	27119					-0.047218786998428186
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7528076171875	2	541.75241	1081.49027	0.79225	0.00042921	-0.07909	-4.2847E-05	0.71316	0.00038636	541.7523811660345	67.072	2.2711	67.137	66.839	69.111	0.065071					212	82	5	0	0	0	0.0020132	5	15328	15328;15376;15425;15474;15713		115.69	77.718	1	7613100			20058	4370	13270	13406	27124;27125;27126;27127;27128	27124					-0.047218786998428186
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7550659179688	2	541.75241	1081.49027	0.38569	0.00020895	0.49475	0.00026803	0.88044	0.00047698	541.7526276000589	69.352	0.80483	69.415	69.168	69.973	0.062126					38	29	2	0	0	0	0.25979	1	16062	16062		11.64	0.81637	1	139360			20059	4370	13270	13406	27129	27129					-0.047218786998428186
SYMLVNENRF	10	Oxidation (M)	_SYM(Oxidation (M))LVNENRF_		SYM(1)LVNENRF		SYM(46)LVNENRF	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.803466796875	2	644.803162	1287.59177	0.14748	9.5093E-05	0.10914	7.0371E-05	0.25661	0.00016546	644.8031769290833	49.594	0.73997	49.594	49.195	49.935	0					58	25	3	0	0	0	0.093146	2	10122	10122;10180		46.022	37.277	1	178360			20060	4863	13271	13407	27130;27131	27130		283			-0.040520520679592664
SYMLVNENRF	10	Oxidation (M)	_SYM(Oxidation (M))LVNENRF_		SYM(1)LVNENRF		SYM(87)LVNENRF	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3051147460938	2	644.803162	1287.59177	0.14323	9.2357E-05	0.14973	9.6544E-05	0.29296	0.0001889	644.8032000290527	50.391	1.0462	50.391	49.935	50.981	0					92	36	3	0	0	0	0.0012232	2	10444	10394;10444		87.123	76.973	1	261680			20061	4863	13271	13407	27132;27133	27133		283			-0.040520520679592664
SYMLVNENRF	10	Oxidation (M)	_SYM(Oxidation (M))LVNENRF_		SYM(1)LVNENRF		SYM(69)LVNENRF	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.8032836914062	2	644.803162	1287.59177	0.17426	0.00011236	0.033168	2.1387E-05	0.20743	0.00013375	644.8031420472488	50.277	1.0184	50.35	49.868	50.886	0.07312					69	35	3	0	0	0	0.019055	2	10239	10239;10293		68.76	58.609	1	207120			20062	4863	13271	13407	27134;27135	27134		283			-0.040520520679592664
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(130)WTINNF	0	0	1		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2603759765625	2	596.260599	1190.50665	0.2951	0.00017596	-0.37521	-0.00022373	-0.080112	-4.7768E-05	596.2600750839428	75.627	0.5914	75.627	75.268	75.86	0					58	26	3	0	0	0	0.00087611	2	18138	18094;18138		125.53	98.646	1	1663400			20063	2144	13272	13408	27136;27137	27137		132			-0.08098797533739344
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(150)WTINNF	0	0	1		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2606201171875	2	596.260599	1190.50665	0.24096	0.00014367	-0.47512	-0.0002833	-0.23417	-0.00013962	596.2603464864217	76.606	1.1697	76.606	76.11	77.28	0					115	45	4	0	0	0	8.9172E-06	5	18452	18410;18452;18504;18565;18620		149.91	113.79	1	2221700			20064	2144	13272	13408	27138;27139;27140;27141;27142	27139		132			-0.08098797533739344
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(130)WTINNF	0	0	1		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2603149414062	2	596.260599	1190.50665	0.18722	0.00011163	-0.12938	-7.7143E-05	0.057842	3.4489E-05	596.2602812727334	75.631	0.5128	75.675	75.266	75.779	0.044037					48	20	3	0	0	0	0.00061878	3	17971	17924;17931;17971		129.77	87.678	1	1524500			20065	2144	13272	13408	27143;27144;27145	27145		132			-0.08098797533739344
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(150)WTINNF	0	0	1		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2606811523438	2	596.260599	1190.50665	0.19449	0.00011597	-0.16504	-9.8408E-05	0.02945	1.756E-05	596.2604461248441	76.637	1.0584	76.676	76.149	77.208	0.039238					105	39	4	0	0	0	8.9172E-06	4	18283	18239;18283;18330;18376		149.91	115.2	1	1782200			20066	2144	13272	13408	27146;27147;27148;27149	27147		132			-0.08098797533739344
SYMWTINNF	9	Unmodified	_SYMWTINNF_					0	0	0		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.26318359375	2	588.263142	1174.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.545	1	82.566	82.066	83.066	0.021744								0	0	0	0.10158	1	20076	20076		32.786	20.545	1				20067	2144	13272	13409	27150	27150					-0.06854493671130513
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7671508789062	2	596.767103	1191.51965	0.42757	0.00025516	0.196	0.00011697	0.62357	0.00037213	596.7669802641507	54.02	0.37738	54.02	53.841	54.218	0					20	12	2	0	0	0	0.081894	1	11537	11537		36.395	21.147	1	112390			20068	938	13273	13410	27151	27151					-0.06844643150020602
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7675170898438	2	596.767103	1191.51965	0.31189	0.00018612	-0.082563	-4.9271E-05	0.22932	0.00013685	596.7672433740157	54.021	0.49557	54.086	53.789	54.285	0.065128					24	18	2	0	0	0	0.19079	1	11411	11411		19.626	13.894	1	113610			20069	938	13273	13410	27152	27152					-0.06844643150020602
SYNEHWNYL	9	Unmodified	_SYNEHWNYL_					0	0	0		ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR;ENSG00000111321|ENST00000228918|LTBR	ENST00000535739.5_1_12:6493425-6494510:+|nuORF	ENST00000535739.5_1_12:6493425-6494510:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.2669067382812	2	613.26727	1224.51999	0.20095	0.00012324	-0.51891	-0.00031823	-0.31795	-0.00019499	613.2667466879901	53.786	0.79644	53.786	53.575	54.371	0					67	28	3	0	0	0	0.03918	2	11441	11441;11486		45.7	21.679	1	703190			20070	1700	13274	13411	27153;27154	27153					-0.08329223430155253
SYNEHWNYL	9	Unmodified	_SYNEHWNYL_					0	0	0		ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR;ENSG00000111321|ENST00000228918|LTBR	ENST00000535739.5_1_12:6493425-6494510:+|nuORF	ENST00000535739.5_1_12:6493425-6494510:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.2674560546875	2	613.26727	1224.51999	0.26954	0.0001653	-0.33143	-0.00020326	-0.061891	-3.7956E-05	613.2668640033312	53.749	0.84984	53.814	53.578	54.427	0.06543					71	33	4	0	0	0	0.010235	3	11306	11289;11306;11349		66.457	41.057	1	675590			20071	1700	13274	13411	27155;27156;27157	27156					-0.08329223430155253
SYNGYVFYL	9	Unmodified	_SYNGYVFYL_					0	0	0		nc|ENSG00000047936|P08922|ROS1;ENSG00000047936|ENST00000368507|ROS1;ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant	nc|ENSG00000047936|P08922|ROS1	nc|ENSG00000047936|P08922|ROS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3262329101562	2	563.266207	1124.51786	0.5633	0.00031729	-0.56919	-0.00032061	-0.0058868	-3.3159E-06	563.2657638247313	82.411	0.39544	82.411	82.2	82.595	0					18	13	2	0	0	0	0.1789	1	20193	20193		29.082	11.995	1	104120			20072	564	13275	13412	27158	27158					-0.03941652167941356
SYNIKYSNF	9	Unmodified	_SYNIKYSNF_					0	0	0			REV__tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1	REV__tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.75927734375	2	568.274564	1134.53457	0.36772	0.00020897	-0.52157	-0.00029639	-0.15384	-8.7425E-05	568.274047583538	74.612	0.66881	74.661	74.45	75.119	0.048546					48	23	4	0	0	0	0.25209	1	17681	17681		12.532	1.7076	1	425790	+		20073	13292	13276	13413	27159	27159					-0.0273115128200061
SYNIVTRQWL	10	Unmodified	_SYNIVTRQWL_					0	0	0		KLHL42|p.T423I|1|0.2|ENSG00000087448|chr12:27797916-27797916|C/T|missense_variant	KLHL42|p.T423I|1|0.2|ENSG00000087448|chr12:27797916-27797916|C/T|missense_variant	KLHL42|p.T423I|1|0.2|ENSG00000087448|chr12:27797916-27797916|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.3027038574219	3	427.2313	1278.67207	0.039863	1.7031E-05	2.4885	0.0010632	2.5284	0.0010802	427.23250242934756	58.901	0.79588	58.972	58.749	59.544	0.070477					47	30	2	0	0	0	0.31766	1	12921	12921		5.7834	0	1	200250			20074	7376	13277	13414	27160	27160					0.043881773174234695
SYNLAQPINF	10	Unmodified	_SYNLAQPINF_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3095703125	2	583.795663	1165.57677	0.72648	0.00042412	0.7352	0.00042921	1.4617	0.00085332	583.7960707645427	102.14	0.62098	102.18	101.9	102.52	0.042656					88	48	3	0	0	0	0.39662	1	26007	26007		12.241	0	1	200550			20075	7526	13278	13415	27161	27161					0.0006082412637624657
SYNLSCELE	9	Unmodified	_SYNLSCELE_					0	0	0		nc|ENSG00000160271|Q12967-2|RALGDS;nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7267456054688	2	529.228965	1056.44338	0.38712	0.00020488	2.0353	0.0010771	2.4224	0.001282	529.731148884326	75.623	0.25196	75.667	75.47	75.722	0.044037					13	9	2	0	0	0	0.29576	1	17955	17955		7.2892	0	1	786210			20076	7541	13279	13416	27162	27162					-0.08258783041628703
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(210)F	0	0	1		ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2744140625	2	621.274041	1240.53353	0.17112	0.00010631	0.061391	3.8141E-05	0.23251	0.00014445	621.2742933510178	64.236	1.5783	64.236	63.92	65.498	0					227	56	6	0	0	0	7.5574E-18	10	14647	14595;14647;14648;14694;14742;14827;14875;14893;14941;14999		208.15	152.64	1	11057000			20077	5593;4626	13280	13417	27163;27164;27165;27166;27167;27168;27169;27170;27171;27172	27164		272			-0.07711688922563553
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(210)F	0	0	1		ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2739868164062	2	621.274041	1240.53353	0.33805	0.00021002	-0.36799	-0.00022862	-0.029938	-1.86E-05	621.2739782796559	66.21	3.5665	66.21	65.446	69.012	0					492	134	6	0	0	0	7.5574E-18	20	15356	15044;15088;15135;15184;15228;15270;15311;15356;15398;15443;15489;15541;15582;15729;15781;15827;15880;15936;15985;16034		208.15	156.52	1	10035000			20078	5593;4626	13280	13417	27173;27174;27175;27176;27177;27178;27179;27180;27181;27182;27183;27184;27185;27186;27187;27188;27189;27190;27191;27192	27180		272			-0.07711688922563553
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(190)F	0	0	1		ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.2742919921875	2	621.274041	1240.53353	0.19369	0.00012034	-0.043523	-2.704E-05	0.15017	9.3297E-05	621.2742466872626	64.169	1.6467	64.24	63.859	65.505	0.071022					211	60	6	0	0	0	1.6618E-13	7	14473	14428;14473;14516;14560;14640;14697;14742		193.29	149.52	1	9834400			20079	5593;4626	13280	13417	27193;27194;27195;27196;27197;27198;27199	27194		272			-0.07711688922563553
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(210)F	0	0	1		ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.274169921875	2	621.274041	1240.53353	0.35732	0.00022199	-0.42492	-0.00026399	-0.067601	-4.1999E-05	621.2739719415857	66.271	3.8716	66.338	65.132	69.003	0.066872					490	145	7	0	0	0	7.5574E-18	20	15072	14789;14830;14927;14978;15026;15072;15113;15158;15203;15249;15293;15343;15386;15426;15624;15672;15772;15820;15867;15912		208.15	156.52	1	11330000			20080	5593;4626	13280	13417	27200;27201;27202;27203;27204;27205;27206;27207;27208;27209;27210;27211;27212;27213;27214;27215;27216;27217;27218;27219	27205		272			-0.07711688922563553
SYNNFFRMF	9	Unmodified	_SYNNFFRMF_					0	0	0		ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.276611328125	2	613.276583	1224.53861	0.079053	4.8481E-05	-0.63483	-0.00038933	-0.55578	-0.00034085	613.2763908885164	74.349	1.234	74.349	74.118	75.352	0					134	45	6	0	0	0	6.155E-09	4	17756	17707;17756;17804;17857		165.72	146.46	1	3463300			20081	5593;4626	13280	13418	27220;27221;27222;27223	27221					-0.06467385059931985
SYNNFFRMF	9	Unmodified	_SYNNFFRMF_					0	0	0		ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000221914|ENST00000380737|PPP2R2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.2764892578125	2	613.276583	1224.53861	0.2238	0.00013725	-0.56915	-0.00034905	-0.34535	-0.0002118	613.2763457550271	74.345	1.4728	74.393	74.101	75.574	0.048546					140	53	5	0	0	0	1.1335E-12	3	17574	17574;17621;17670		179.17	162.06	1	3187800			20082	5593;4626	13280	13418	27224;27225;27226	27224					-0.06467385059931985
SYNPAENAVLL	11	Unmodified	_SYNPAENAVLL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.8067016601562	2	595.806228	1189.5979	0.42112	0.00025091	-0.28673	-0.00017083	0.13439	8.0072E-05	595.805675891584	69.225	0.86749	69.225	68.775	69.643	0					44	31	2	0	0	0	0.24931	1	16196	16196		39.213	11.99	1	428460			20083	2175	13281	13419	27227	27227					0.010687894352258809
SYNPAENAVLL	11	Unmodified	_SYNPAENAVLL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.8062133789062	2	595.806228	1189.5979	0.036542	2.1772E-05	0.36035	0.0002147	0.39689	0.00023647	595.8058129395039	69.174	1.1178	69.236	68.739	69.857	0.062126					59	41	3	0	0	0	0.17674	1	16007	16007		33.821	13.24	1	396300			20084	2175	13281	13419	27228	27228					0.010687894352258809
SYNPLWLRI	9	Unmodified	_SYNPLWLRI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3244018554688	2	581.324391	1160.63423	0.11982	6.9657E-05	-0.1448	-8.4176E-05	-0.024976	-1.4519E-05	581.3243187784001	72.572	1.8842	72.572	72.287	74.171	0					195	67	5	0	0	0	1.8205E-09	6	17191	17145;17191;17232;17283;17328;17374		173.69	107.23	1	10945000			20085	698	13282	13420	27229;27230;27231;27232;27233;27234	27230					0.06033711122586283
SYNPLWLRI	9	Unmodified	_SYNPLWLRI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3244018554688	2	581.324391	1160.63423	0.35364	0.00020558	-0.32688	-0.00019003	0.026757	1.5554E-05	581.3242166388374	72.452	1.7048	72.508	72.265	73.97	0.055939					171	62	6	0	0	0	1.0657E-05	5	17022	16973;17022;17100;17151;17197		148.27	85.695	1	10234000			20086	698	13282	13420	27235;27236;27237;27238;27239	27236					0.06033711122586283
SYNPLWLRI	9	Unmodified	_SYNPLWLRI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3241577148438	2	581.324391	1160.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.25	1	74.298	73.798	74.798	0.048546								0	0	0	0.17708	1	17548	17548		21.537	13.627	1				20087	698	13282	13420	27240	27240					0.06033711122586283
SYNWTFYTL	9	Unmodified	_SYNWTFYTL_					0	0	0		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8564453125	2	597.776939	1193.53933	0.04603	2.7516E-05	-0.63061	-0.00037696	-0.58458	-0.00034945	597.7769214792795	86.596	0.28331	86.596	86.356	86.639	0					13	9	2	0	0	0	0.055289	1	21455	21455		61.602	25.475	1	207840			20088	2094	13283	13421	27241	27241					-0.049702671392424236
SYNWTFYTL	9	Unmodified	_SYNWTFYTL_					0	0	0		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8564453125	2	597.776939	1193.53933	0.14756	8.8208E-05	-0.48323	-0.00028886	-0.33567	-0.00020066	597.7771738508733	86.569	0.41105	86.597	86.329	86.74	0.027573					19	12	2	0	0	0	0.14884	1	21273	21273		36.506	5.8697	1	211880			20089	2094	13283	13421	27242	27242					-0.049702671392424236
SYNYPQKMM	9	Unmodified	_SYNYPQKMM_					0	0	0		nc|ENSG00000101901|Q9NP73-4|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;ENSG00000101901|ENST00000394780|ALG13	nc|ENSG00000101901|Q9NP73-4|ALG13	nc|ENSG00000101901|Q9NP73-4|ALG13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3275756835938	2	581.257002	1160.49945	0.55584	0.00032308	3.3183	0.0019288	3.8741	0.0022518	581.7589953862529	74.708	0.13283	74.708	74.635	74.767	0					5	4	2	0	0	0	0.25376	1	17830	17830		6.2058	0.47393	1	76555			20090	1278	13284	13422	27243	27243					-0.074378534058269
SYPAFWTSF	9	Unmodified	_SYPAFWTSF_					0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.253173828125	2	553.2531	1104.49165	0.6168	0.00034125	0.15956	8.8276E-05	0.77636	0.00042952	553.2529664146863	87.841	0.93861	87.841	87.574	88.512	0					57	33	3	0	0	0	0.0045547	2	21892	21846;21892		88.904	64.883	1	2674000			20091	5970	13285	13423	27244;27245	27245					-0.05641921339451983
SYPAKLSFI	9	Unmodified	_SYPAKLSFI_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.2869873046875	2	513.286943	1024.55933	0.5029	0.00025813	-0.33294	-0.00017089	0.16997	8.7241E-05	513.2866374783664	60.101	0.82445	60.101	59.895	60.72	0					78	29	4	0	0	0	0.15482	2	13370	13370;13420		23.79	10.747	1	584650			20092	7394	13286	13424	27246;27247	27246					0.04803528591378381
SYPAKLSFI	9	Unmodified	_SYPAKLSFI_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2867431640625	2	513.286943	1024.55933	0.21076	0.00010818	-0.13711	-7.0375E-05	0.073654	3.7805E-05	513.2867338293933	60.006	0.69731	60.078	59.824	60.522	0.072338					58	24	3	0	0	0	0.22083	1	13195	13195		16.149	3.1066	1	558550			20093	7394	13286	13424	27248	27248					0.04803528591378381
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7684936523438	2	526.768583	1051.52261	0.075979	4.0024E-05	0.047479	2.501E-05	0.12346	6.5034E-05	526.7686338055229	86.923	0.65192	86.923	86.639	87.291	0					73	28	3	0	0	0	0.0020132	4	21561	21517;21561;21602;21662		115.69	52.129	1	3228700			20094	3164	13287	13425	27249;27250;27251;27252	27250					-0.0010876802521124773
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7686157226562	2	526.768583	1051.52261	0.091933	4.8427E-05	0.093658	4.9336E-05	0.18559	9.7764E-05	526.7686567106834	86.843	0.62959	86.87	86.653	87.283	0.027573					76	28	3	0	0	0	0.00022088	4	21389	21344;21389;21433;21481		136.33	72.771	1	2865900			20095	3164	13287	13425	27253;27254;27255;27256	27254					-0.0010876802521124773
SYPERPIIF	9	Unmodified	_SYPERPIIF_					0	0	0		ENSG00000174804|ENST00000531380|FZD4;ENSG00000155760|ENST00000286201|FZD7;ENSG00000157240|ENST00000287934|FZD1	ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7994995117188	2	561.303124	1120.5917	0.53038	0.0002977	-0.19354	-0.00010864	0.33683	0.00018907	561.3037626698382	71.248	0.14093	71.306	71.237	71.378	0.058578					6	4	2	0	0	0	0.25809	1	16637	16637		2.3027	0.24298	1	58308			20096	3595	13288	13426	27257	27257					0.036223159943801875
SYPFTFEAF	9	Unmodified	_SYPFTFEAF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7532958984375	2	554.752933	1107.49131	0.5784	0.00032087	0.31703	0.00017587	0.89543	0.00049674	554.7529955815303	87.686	0.73691	87.686	87.402	88.139	0					84	26	4	0	0	0	8.832E-06	1	21803	21803		149.99	57.172	1	2368500			20097	425	13289	13427	27258	27258					-0.05813341059274535
SYPFTFEAF	9	Unmodified	_SYPFTFEAF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.78759765625	2	554.752933	1107.49131	0.62698	0.00034782	0.45241	0.00025098	1.0794	0.00059879	554.7530719112212	88.18	0.23442	88.18	88.139	88.374	0					11	8	2	0	0	0	0.089428	1	22009	22009		47.749	28.492	1	65401			20098	425	13289	13427	27259	27259					-0.05813341059274535
SYPFTFEAF	9	Unmodified	_SYPFTFEAF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7532348632812	2	554.752933	1107.49131	0.48752	0.00027045	0.25142	0.00013947	0.73894	0.00040993	554.7529684079266	87.611	1.113	87.641	87.375	88.488	0.030037					117	40	5	0	0	0	8.832E-06	2	21637	21585;21637		149.99	62.093	1	3175800			20099	425	13289	13427	27260;27261	27261					-0.05813341059274535
SYPKPCVFCH	10	Unmodified	_SYPKPCVFCH_					0	0	0			REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF	REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7662963867188	2	590.767537	1179.52052	0.017596	1.0395E-05	-0.67805	-0.00040057	-0.66046	-0.00039018	590.7667761100919	43.019	0.59446	43.109	42.887	43.482	0.089764					37	21	3	0	0	0	0.46746	1	8147	8147		1.4819	0.15237	1	147720	+		20100	12043	13290	13428	27262	27262					-0.06205843306292991
SYPNVFLVF	9	Unmodified	_SYPNVFLVF_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2874755859375	2	543.286943	1084.55933	0.36176	0.00019654	0.17224	9.3575E-05	0.534	0.00029011	543.2870833110984	96.172	0.94635	96.172	95.925	96.872	0					147	46	4	0	0	0	1.4799E-05	4	24392	24349;24392;24434;24592		144.35	96.004	1	9533300			20101	448	13291	13429	27263;27264;27265;27266	27264					0.020435285913663392
SYPNVFLVF	9	Unmodified	_SYPNVFLVF_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2872314453125	2	543.286943	1084.55933	0.41526	0.00022561	0.12139	6.5949E-05	0.53665	0.00029156	543.2870044236942	96.135	1.1678	96.175	95.907	97.075	0.039772					170	61	4	0	0	0	1.4799E-05	6	24223	24145;24184;24223;24263;24307;24441		144.35	96.111	1	5480600			20102	448	13291	13429	27267;27268;27269;27270;27271;27272	27269					0.020435285913663392
SYPRRFSTL	9	Unmodified	_SYPRRFSTL_					0	0	0		ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8038940429688	2	563.803823	1125.59309	0.20421	0.00011514	-0.050858	-2.8674E-05	0.15335	8.6461E-05	563.8037421474982	35.911	0.72267	35.989	35.791	36.514	0.078831					67	28	3	0	0	0	0.27929	1	5965	5965		9.3831	2.66	1	174900			20103	6371	13292	13430	27273	27273					0.03531950083151969
SYPSAFSKL	9	Unmodified	_SYPSAFSKL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2615661621094	2	500.260925	998.507297	0.20462	0.00010236	1.122	0.00056131	1.3266	0.00066367	500.26132762598485	50.647	0.54637	50.647	50.376	50.922	0					42	18	3	0	0	0	0.10543	1	10509	10509		31.268	12.011	1	256850			20104	4180	13293	13431	27274	27274					0.007983651776157785
SYPSAFSKL	9	Unmodified	_SYPSAFSKL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2608947753906	2	500.260925	998.507297	0.30845	0.00015431	0.78273	0.00039157	1.0912	0.00054587	500.2611817191008	50.531	0.47196	50.604	50.385	50.857	0.07312					36	16	3	0	0	0	0.2125	1	10342	10342		17.113	2.2746	1	253840			20105	4180	13293	13431	27275	27275					0.007983651776157785
SYPTFFPRF	9	Unmodified	_SYPTFFPRF_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2904052734375	2	581.290017	1160.56548	0.11658	6.7768E-05	1.3646	0.00079323	1.4812	0.000861	581.2911084793874	72.61	1.0821	72.61	72.202	73.284	0					132	37	5	0	0	0	0.015341	1	17258	17258		61.602	38.866	1	3873100			20106	772	13294	13432	27276	27276					-0.008379531770970061
SYPTFFPRF	9	Unmodified	_SYPTFFPRF_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2904663085938	2	581.290017	1160.56548	0.349	0.00020287	1.0279	0.00059753	1.3769	0.0008004	581.2908884354983	72.522	1.1342	72.577	72.207	73.342	0.055939					129	39	5	0	0	0	0.018465	2	17069	17069;17119		59.368	30.481	1	3367100			20107	772	13294	13432	27277;27278	27277					-0.008379531770970061
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2545166015625	2	560.253297	1118.49204	0.69522	0.0003895	0.57652	0.000323	1.2717	0.0007125	560.2534909609201	85.149	0.91895	85.149	84.838	85.757	0					119	36	5	0	0	0	1.8728E-05	4	21030	20986;21030;21073;21140		140.63	102.46	1	4902500			20108	2031	13295	13433	27279;27280;27281;27282	27280					-0.06246546410238807
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.25390625	2	560.253297	1118.49204	0.78773	0.00044133	0.38456	0.00021545	1.1723	0.00065678	560.2533853794396	85.1	0.89907	85.123	84.895	85.794	0.023125					126	35	5	0	0	0	1.8728E-05	4	20870	20828;20870;20912;20961		140.63	104.51	1	4464000			20109	2031	13295	13433	27283;27284;27285;27286	27284					-0.06246546410238807
SYQFILNLF	9	Unmodified	_SYQFILNLF_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8053588867188	2	572.8055	1143.59645	0.26163	0.00014986	0.083199	4.7657E-05	0.34483	0.00019752	572.8055198060373	102.21	0.72483	102.21	101.98	102.71	0					143	48	4	0	0	0	0.0047429	6	26245	26160;26200;26245;26284;26324;26367		83.429	31.16	1	3321500			20110	1920	13296	13434	27287;27288;27289;27290;27291;27292	27289					0.03039200137118314
SYQFILNLF	9	Unmodified	_SYQFILNLF_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8054809570312	2	572.8055	1143.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.01	1	103.01	102.51	103.51	0								0	0	0	0.22927	1	26461	26461		13.615	1.3742	1				20111	1920	13296	13434	27293	27293					0.03039200137118314
SYQFILNLF	9	Unmodified	_SYQFILNLF_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.8056030273438	2	572.8055	1143.59645	0.41304	0.00023659	-0.12398	-7.1018E-05	0.28906	0.00016557	572.805444090942	102.14	0.73987	102.18	101.91	102.65	0.042656					171	55	4	0	0	0	0.0046221	5	26063	25980;26020;26063;26100;26146		86.332	34.063	1	1425500			20112	1920	13296	13434	27294;27295;27296;27297;27298	27296					0.03039200137118314
SYQKLLFKF	9	Unmodified	_SYQKLLFKF_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.3372192382812	2	587.336967	1172.65938	0.56376	0.00033112	0.15427	9.0608E-05	0.71803	0.00042172	587.3371741805548	57.203	0.62344	57.203	57	57.623	0					50	22	3	0	0	0	0.0081278	1	12530	12530		72.968	36.841	1	307290			20113	481	13297	13435	27299	27299					0.07995765925170417
SYQKLLFKF	9	Unmodified	_SYQKLLFKF_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.3377685546875	2	587.336967	1172.65938	0.72399	0.00042523	0.37653	0.00022115	1.1005	0.00064638	587.3373875056752	57.177	0.83065	57.245	56.972	57.802	0.068371					63	31	3	0	0	0	0.016057	1	12352	12352		61.09	32.008	1	312610			20114	481	13297	13435	27300	27300					0.07995765925170417
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.8109130859375	2	563.810782	1125.60701	0.61812	0.0003485	-0.26838	-0.00015132	0.34974	0.00019719	563.8105169627928	65.207	1.5327	65.207	64.973	66.506	0					157	55	5	0	0	0	0.00066972	3	14968	14918;14968;15013		128.93	51.555	1	5636900			20115	4263	13298	13436	27301;27302;27303	27302					0.04923182791549152
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8109130859375	2	563.810782	1125.60701	0.48213	0.00027183	-0.10443	-5.888E-05	0.37769	0.00021295	563.8106122805724	65.161	1.6467	65.23	64.959	66.606	0.068916					175	63	5	0	0	0	0.002259	4	14803	14757;14803;14853;14980		114.19	52.829	1	6743600			20116	4263	13298	13436	27304;27305;27306;27307	27305					0.04923182791549152
SYQKVMALW	9	Oxidation (M)	_SYQKVM(Oxidation (M))ALW_		SYQKVM(1)ALW		SYQKVM(70)ALW	0	0	1		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.289306640625	2	571.289159	1140.56377	0.54306	0.00031024	0.27425	0.00015668	0.81731	0.00046692	571.2893129625551	54.796	1.1796	54.796	54.429	55.608	0					106	48	3	0	0	0	0.0089808	5	11775	11725;11775;11784;11835;11898		70.332	43.456	1	319340			20117	2371	13299	13437	27308;27309;27310;27311;27312	27309		150			-0.0008933025735586853
SYQKVMALW	9	Oxidation (M)	_SYQKVM(Oxidation (M))ALW_		SYQKVM(1)ALW		SYQKVM(58)ALW	0	0	1		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2899780273438	2	571.289159	1140.56377	0.33528	0.00019154	0.12549	7.169E-05	0.46076	0.00026323	571.2892372279242	52.909	0.66116	52.974	52.75	53.411	0.06543					70	30	3	0	0	0	0.020768	1	11087	11087		57.722	33.701	1	350120			20118	2371	13299	13437	27313	27313		150			-0.0008933025735586853
SYQKVMALW	9	Oxidation (M)	_SYQKVM(Oxidation (M))ALW_		SYQKVM(1)ALW		SYQKVM(80)ALW	0	0	1		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2892456054688	2	571.289159	1140.56377	0.57182	0.00032667	0.077554	4.4306E-05	0.64937	0.00037098	571.2891874959122	54.7	1.0504	54.765	54.498	55.548	0.065128					107	47	3	0	0	0	0.005983	4	11611	11567;11611;11633;11652		79.596	41.622	1	388390			20119	2371	13299	13437	27314;27315;27316;27317	27315		150			-0.0008933025735586853
SYQKVMALW	9	Unmodified	_SYQKVMALW_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2307739257812	2	563.291702	1124.56885	0.37176	0.00020941	3.6555	0.0020591	4.0272	0.0022685	563.29377242488	62.263	0.86801	62.263	61.993	62.861	0					51	31	2	0	0	0	0.15403	1	14072	14072		34.402	17.459	1	162090			20120	2371	13299	13438	27318	27318					0.011549736052529624
SYQKVMALW	9	Unmodified	_SYQKVMALW_					0	0	0		nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	nc|ENSG00000127603|Q9UPN3-4|MACF1	nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.230712890625	2	563.291702	1124.56885	0.37335	0.0002103	2.5625	0.0014434	2.9358	0.0016537	563.2935381512772	62.202	0.6491	62.275	62.011	62.66	0.073421					37	22	2	0	0	0	0.15403	1	13891	13891		34.402	13.531	1	161840			20121	2371	13299	13438	27319	27319					0.011549736052529624
SYQPNENKF	9	Unmodified	_SYQPNENKF_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7620239257812	2	563.76182	1125.50909	-0.031041	-1.75E-05	0.077714	4.3812E-05	0.046673	2.6313E-05	563.7618275447727	32.713	0.43275	32.787	32.656	33.088	0.073784					39	19	3	0	0	0	0.16392	1	5003	5003		22.736	4.5899	1	65309			20122	4266	13300	13439	27320	27320					-0.04864625804430034
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.2694702148438	2	581.269813	1160.52507	0.54367	0.00031602	-0.6977	-0.00040555	-0.15403	-8.9533E-05	581.2696675737484	47.371	1.4522	47.371	46.858	48.311	0					98	49	5	0	0	0	0.0045688	1	9507	9507		88.364	42.343	1	380170			20123	5015	13301	13440	27321	27321					-0.04876919567527693
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2697143554688	2	581.269813	1160.52507	0.64423	0.00037447	-0.77265	-0.00044912	-0.12843	-7.4652E-05	581.2696049039531	47.294	0.76205	47.377	47.219	47.981	0.083096					72	29	5	0	0	0	0.0043231	2	9349	9349;9423		97.741	51.72	1	329550			20124	5015	13301	13440	27322;27323	27322					-0.04876919567527693
SYQREPYSP	9	Unmodified	_SYQREPYSP_					0	0	0			REV__ENSG00000198353|ENST00000430889|HOXC4	REV__ENSG00000198353|ENST00000430889|HOXC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7619018554688	2	563.76182	1125.50909	-0.11447	-6.4536E-05	0.018052	1.0177E-05	-0.096421	-5.4359E-05	563.7619301612448	32.744	0.4821	32.744	32.598	33.08	0					47	21	3	0	0	0	0.24767	1	5100	5100		13.042	0	1	65977	+		20125	10894	13302	13441	27324	27324					-0.04864625804430034
SYQREPYSP	9	Unmodified	_SYQREPYSP_					0	0	0			REV__ENSG00000198353|ENST00000430889|HOXC4	REV__ENSG00000198353|ENST00000430889|HOXC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7620239257812	2	563.76182	1125.50909	-0.031041	-1.75E-05	0.077714	4.3812E-05	0.046673	2.6313E-05	563.7618275447727	32.713	0.43275	32.787	32.656	33.088	0.073784					39	19	3	0	0	0	0.32112	1	4962	4962		3.9444	0	1	65309	+		20126	10894	13302	13441	27325	27325					-0.04864625804430034
SYQSKINLF	9	Unmodified	_SYQSKINLF_					0	0	0			REV__ENST00000413059.1_1_X:57419493-57419883:-|nuORF	REV__ENST00000413059.1_1_X:57419493-57419883:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7810668945312	2	550.292756	1098.57096	0.49525	0.00027253	1.2633	0.00069521	1.7586	0.00096774	550.2934104984079	94.039	0.25224	94.077	93.997	94.25	0.038094					17	12	2	0	0	0	0.2446	1	23625	23625		11.64	0.81637	1	131600	+		20127	11786	13303	13442	27326	27326					0.02561725614691568
SYQSQINHI	9	Unmodified	_SYQSQINHI_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2705078125	2	545.269813	1088.52507	0.32206	0.00017561	0.45392	0.00024751	0.77598	0.00042312	545.2699229939205	37.841	0.50778	37.841	37.675	38.182	0					55	17	4	0	0	0	0.056368	2	6629	6629;6681		41.956	23.809	1	121970			20128	270	13304	13443	27327;27328	27327					-0.015649195675223382
SYQSVFLFL	9	Unmodified	_SYQSVFLFL_					0	0	0		ENST00000366591.4_1_1:236305922-236343463:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.293212890625	2	552.292225	1102.5699	0.69856	0.00038581	0.38598	0.00021318	1.0845	0.00059898	552.2923498611684	97.642	0.91618	97.642	97.461	98.377	0					91	45	3	0	0	0	0.19307	1	24796	24796		19.362	3.2128	1	786260			20129	865	13305	13444	27329	27329					0.02271511245817237
SYQYSFNNT	9	Unmodified	_SYQYSFNNT_					0	0	0			REV__tr|U7SRN6|U7SRN6_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01598PE=4SV=1	REV__tr|U7SRN6|U7SRN6_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01598PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.810791015625	2	562.238178	1122.4618	0.58127	0.00032681	1.3555	0.00076214	1.9368	0.001089	562.2388073980078	99.414	0.46553	99.456	99.177	99.643	0.042831					56	29	3	0	0	0	0.25376	1	25234	25234		6.2058	0	1	142410	+		20130	13136	13306	13445	27330	27330					-0.09452905075431772
SYRELFEFF	9	Unmodified	_SYRELFEFF_					0	0	0		nc|ENSG00000111319|P37088-3|SCNN1A;SCNN1A-DCP1B|2|fusion;SCNN1A-DCP1B|1|fusion;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	nc|ENSG00000111319|P37088-3|SCNN1A	nc|ENSG00000111319|P37088-3|SCNN1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.2980346679688	2	619.298039	1236.58152	0.27472	0.00017013	1.0845	0.00067165	1.3593	0.00084178	619.2980617811949	81.922	0.79201	81.922	81.69	82.482	0					81	27	5	0	0	0	0.010553	1	20050	20050		65.474	47.327	1	534120			20131	1699	13307	13446	27331	27331					-0.027302917308816177
SYRELFEFF	9	Unmodified	_SYRELFEFF_					0	0	0		nc|ENSG00000111319|P37088-3|SCNN1A;SCNN1A-DCP1B|2|fusion;SCNN1A-DCP1B|1|fusion;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	nc|ENSG00000111319|P37088-3|SCNN1A	nc|ENSG00000111319|P37088-3|SCNN1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.2978515625	2	619.298039	1236.58152	0.031884	1.9745E-05	1.0654	0.00065978	1.0972	0.00067952	619.298350611977	81.929	0.79854	81.951	81.676	82.475	0.021866					84	28	5	0	0	0	0.038996	2	19883	19883;19942		45.74	30.902	1	505640			20132	1699	13307	13446	27332;27333	27332					-0.027302917308816177
SYREVKYF	8	Unmodified	_SYREVKYF_					0	0	0		ENST00000502864.5_1_5:36608606-36630112:+|nuORF;nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3	ENST00000502864.5_1_5:36608606-36630112:+|nuORF	ENST00000502864.5_1_5:36608606-36630112:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7574462890625	2	546.279649	1090.54475	0.28207	0.00015409	-0.86178	-0.00047077	-0.57971	-0.00031668	546.7798975897027	56.019	0.73492	56.085	55.759	56.494	0.066452					58	27	4	0	0	0	0.34579	1	12043	12043		23.148	1.4018	1	348880			20133	878	13308	13447	27334	27334					0.003094564432331026
SYRIIYNLF	9	Unmodified	_SYRIIYNLF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.8244018554688	2	594.824224	1187.63389	0.017573	1.0453E-05	0.31939	0.00018998	0.33697	0.00020043	594.8242861651414	73.462	1.0331	73.462	73.254	74.287	0					86	37	4	0	0	0	0.004443	3	17483	17442;17483;17532		93.166	16.341	1	2696700			20134	3933	13309	13448	27335;27336;27337	27336					0.04758291402731629
SYRIIYNLF	9	Unmodified	_SYRIIYNLF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.8242797851562	2	594.824224	1187.63389	0.15607	9.2833E-05	0.17291	0.00010285	0.32898	0.00019568	594.8242217582659	73.395	1.0806	73.448	73.266	74.346	0.052574					93	41	4	0	0	0	0.0011184	4	17304	17261;17304;17356;17405		121.53	19.074	1	1964100			20135	3933	13309	13448	27338;27339;27340;27341	27339					0.04758291402731629
SYRMTWRF	8	Unmodified	_SYRMTWRF_					0	0	0		ENST00000492094.6_2_6:9673326-9673401:-|nuORF	ENST00000492094.6_2_6:9673326-9673401:-|nuORF	ENST00000492094.6_2_6:9673326-9673401:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.779296875	2	573.779293	1145.54403	0.3578	0.0002053	-3.3528	-0.0019238	-2.995	-0.0017185	573.7777332085888	100.91	0.44938	100.91	100.76	101.21	0					39	25	2	0	0	0	0.50815	1	25822	25822		11.64	1.5664	1	87849			20136	6811	13310	13449	27342	27342					-0.02291661477465823
SYRMTWRF	8	Unmodified	_SYRMTWRF_					0	0	0		ENST00000492094.6_2_6:9673326-9673401:-|nuORF	ENST00000492094.6_2_6:9673326-9673401:-|nuORF	ENST00000492094.6_2_6:9673326-9673401:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	573.779293	1145.54403	0.45528	0.00026123	-3.7	-0.002123	-3.2447	-0.0018617	573.7773846322197	100.91	0.41651	100.95	100.76	101.18	0.042839	0.021034	-6.9389E-05	NaN	11.64	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57740			20137	6811	13310	13449							-0.02291661477465823
SYRNIFPIW	9	Unmodified	_SYRNIFPIW_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS;ENST00000491729.1_1_21:47611020-47611911:-|nuORF	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.84228515625	2	598.316566	1194.61858	0.41975	0.00025114	0.7338	0.00043904	1.1535	0.00069019	598.8184967347507	75.181	0.57253	75.181	74.988	75.561	0					47	21	3	0	0	0	0.1789	1	17997	17997		29.082	11.969	1	570240			20138	3755	13311	13450	27343	27343					0.029054246055466137
SYRNIFPIW	9	Unmodified	_SYRNIFPIW_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS;ENST00000491729.1_1_21:47611020-47611911:-|nuORF	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8424072265625	2	598.316566	1194.61858	0.28798	0.0001723	0.61609	0.00036862	0.90407	0.00054092	598.3169867375092	75.122	0.60216	75.166	74.967	75.569	0.044037					42	21	3	0	0	0	0.2094	1	17824	17824		17.113	0	1	758170			20139	3755	13311	13450	27344	27344					0.029054246055466137
SYRPRDSNE	9	Unmodified	_SYRPRDSNE_					0	0	0		nc|ENSG00000116701|P19878-2|NCF2;nc|ENSG00000116701|P19878-4|NCF2;nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2	nc|ENSG00000116701|P19878-2|NCF2	nc|ENSG00000116701|P19878-2|NCF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2601318359375	2	562.259976	1122.5054	0.35269	0.0001983	0.94424	0.00053091	1.2969	0.00072921	562.2600990289689	96.172	0.40695	96.172	95.936	96.343	0					49	21	3	0	0	0	0.27332	1	24394	24394		10.074	0	1	360010			20140	1970	13312	13451	27345	27345					-0.050952955782804565
SYRPRDSNE	9	Unmodified	_SYRPRDSNE_					0	0	0		nc|ENSG00000116701|P19878-2|NCF2;nc|ENSG00000116701|P19878-4|NCF2;nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2	nc|ENSG00000116701|P19878-2|NCF2	nc|ENSG00000116701|P19878-2|NCF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2604370117188	2	562.259976	1122.5054	0.41732	0.00023464	0.6353	0.00035721	1.0526	0.00059185	562.2600666786986	96.127	0.4379	96.167	95.925	96.363	0.039772					45	23	3	0	0	0	0.27332	1	24221	24221		10.074	0	1	323030			20141	1970	13312	13451	27346	27346					-0.050952955782804565
SYRPRDSNE	9	Unmodified	_SYRPRDSNE_					0	0	0		nc|ENSG00000116701|P19878-2|NCF2;nc|ENSG00000116701|P19878-4|NCF2;nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2	nc|ENSG00000116701|P19878-2|NCF2	nc|ENSG00000116701|P19878-2|NCF2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	562.259976	1122.5054	0.35269	0.0001983	0.94424	0.00053091	1.2969	0.00072921	562.2600990289689	96.172	0.40695	96.172	95.936	96.343	0	0.0025619	0.00020134	NaN	10.074	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360010			20142	1970	13312	13451							-0.050952955782804565
SYRRRLPSV	9	Unmodified	_SYRRRLPSV_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330322265625	2	567.330539	1132.64652	0.13865	7.8661E-05	-0.21875	-0.0001241	-0.080096	-4.5441E-05	567.3303349058168	86.524	2.9324	86.524	85.605	88.537	0					378	115	5	0	0	0	0.30005	1	21784	21784		6.7232	0.51738	1	7160200			20143	6009	13313	13452	27347	27347					0.08550747585650242
SYRRRLPSV	9	Unmodified	_SYRRRLPSV_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330810546875	2	567.330539	1132.64652	0.29401	0.0001668	-0.52459	-0.00029762	-0.23059	-0.00013082	567.3302062765836	88.75	0.56789	88.75	88.486	89.053	0					62	23	3	0	0	0	0.30005	1	22145	22145		6.7232	6.7232	1	280580			20144	6009	13313	13452	27348	27348					0.08550747585650242
SYRVFCLMS	9	Unmodified	_SYRVFCLMS_					0	0	0		nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3260498046875	2	553.262087	1104.50962	0.9435	0.000522	4.1092	0.0022735	5.0527	0.0027955	553.2640430982377	80.878	0.8039	80.878	80.571	81.374	0					50	27	3	0	0	0	0.20194	1	19710	19710		24.021	7.0783	1	140480			20145	383	13314	13453	27349	27349					-0.03845245680577136
SYSDPPLKF	9	Unmodified	_SYSDPPLKF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.266845703125	2	527.266207	1052.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.329	1	54.329	53.829	54.829	0								0	0	0	6.1411E-05	1	11631	11631		92.653	60.348	1				20146	4358	13315	13454	27350	27350					-0.006296521679587386
SYSDPPLKF	9	Unmodified	_SYSDPPLKF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2665405273438	2	527.266207	1052.51786	0.50386	0.00026567	-0.62579	-0.00032996	-0.12194	-6.4293E-05	527.2661035180079	54.32	0.39368	54.386	54.179	54.572	0.065128					41	18	3	0	0	0	0.0046402	1	11484	11484		85.642	57.155	1	374350			20147	4358	13315	13454	27351	27351					-0.006296521679587386
SYSFFHFML	9	Oxidation (M)	_SYSFFHFM(Oxidation (M))L_		SYSFFHFM(1)L		SYSFFHFM(67)L	0	0	1		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7676391601562	2	597.76806	1193.52157	0.36213	0.00021647	-0.11846	-7.0812E-05	0.24367	0.00014566	597.767847643895	79.294	0.48985	79.294	79.1	79.59	0					35	16	3	0	0	0	0.0099477	1	19228	19228		67.344	46.929	1	226010			20148	1735	13316	13455	27352	27352		104			-0.06745305665731394
SYSFFHFML	9	Oxidation (M)	_SYSFFHFM(Oxidation (M))L_		SYSFFHFM(1)L		SYSFFHFM(78)L	0	0	1		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3021850585938	2	597.76806	1193.52157	0.68318	0.00040838	1.0098	0.00060363	1.693	0.001012	597.768474844973	79.91	1.0037	79.91	79.621	80.625	0					68	34	3	0	0	0	0.009804	1	19419	19419		77.984	56.447	1	245810			20149	1735	13316	13455	27353	27353		104			-0.06745305665731394
SYSFFHFML	9	Oxidation (M)	_SYSFFHFM(Oxidation (M))L_		SYSFFHFM(1)L		SYSFFHFM(97)L	0	0	1		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7679443359375	2	597.76806	1193.52157	0.10964	6.5539E-05	0.46403	0.00027738	0.57367	0.00034292	597.768161790871	79.242	0.42167	79.268	79.098	79.519	0.026428					33	14	3	0	0	0	0.0043406	1	19072	19072		97.075	64.289	1	192280			20150	1735	13316	13455	27354	27354		104			-0.06745305665731394
SYSFFHFML	9	Oxidation (M)	_SYSFFHFM(Oxidation (M))L_		SYSFFHFM(1)L		SYSFFHFM(71)L	0	0	1		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.30224609375	2	597.76806	1193.52157	0.37032	0.00022137	1.0728	0.00064128	1.4431	0.00086265	597.7685731468797	79.861	0.96054	79.887	79.573	80.534	0.026428					61	34	2	0	0	0	0.013443	1	19269	19269		70.716	43.087	1	177550			20151	1735	13316	13455	27355	27355		104			-0.06745305665731394
SYSHHSGLE	9	Unmodified	_SYSHHSGLE_					0	0	0		nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2	nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2877197265625	2	508.725238	1015.43592	0.1481	7.5341E-05	-0.5974	-0.00030391	-0.4493	-0.00022857	508.7249633769313	49.521	0.31229	49.521	49.34	49.653	0					17	10	2	0	0	0	0.24263	1	10205	10205		12.532	4.6214	1	68829			20152	1496	13317	13456	27356	27356					-0.07117754527041598
SYSHIMALI	9	Oxidation (M)	_SYSHIM(Oxidation (M))ALI_		SYSHIM(1)ALI		SYSHIM(44)ALI	0	0	1		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.767822265625	2	525.76806	1049.52157	0.35109	0.00018459	-0.18878	-9.9253E-05	0.16231	8.534E-05	525.7678653064627	55.748	1.2526	55.748	55.318	56.57	0					92	44	3	0	0	0	0.045114	1	12107	12107		44.407	19.733	1	296810			20153	3774	13318	13457	27357	27357		233			-0.0012130566574342083
SYSHIMALI	9	Oxidation (M)	_SYSHIM(Oxidation (M))ALI_		SYSHIM(1)ALI		SYSHIM(51)ALI	0	0	1		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7688598632812	2	525.76806	1049.52157	0.29968	0.00015756	0.21359	0.0001123	0.51327	0.00026986	525.7680722348132	53.399	0.51956	53.464	53.242	53.762	0.06543					54	25	3	0	0	0	0.030375	1	11201	11201		50.855	20.218	1	246030			20154	3774	13318	13457	27358	27358		233			-0.0012130566574342083
SYSHIMALI	9	Oxidation (M)	_SYSHIM(Oxidation (M))ALI_					0	0	1		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	525.76806	1049.52157	0.27593	0.00014507	0.091148	4.7923E-05	0.36707	0.000193	525.7680011454979	53.428	0.70974	53.428	53.188	53.898	0	-0.018159	-5.6132E-05	NaN	50.855	54	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305360			20155	3774	13318	13457				233			-0.0012130566574342083
SYSHIMALI	9	Oxidation (M)	_SYSHIM(Oxidation (M))ALI_					0	0	1		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.76806	1049.52157	0.21455	0.0001128	-0.32949	-0.00017323	-0.11493	-6.0429E-05	525.7679389192305	55.716	0.85048	55.781	55.402	56.252	0.065128	0.016484	-7.7198E-05	NaN	44.407	66	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234730			20156	3774	13318	13457				233			-0.0012130566574342083
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(160)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7554931640625	2	528.755149	1055.49575	0.46802	0.00024747	-0.33079	-0.00017491	0.13724	7.2565E-05	528.755067079533	60.276	1.3319	60.276	59.7	61.032	0					109	48	3	0	0	0	3.513E-06	4	13401	13355;13401;13448;13494		155.03	101.19	1	789020			20157	1945	13319	13458	27359;27360;27361;27362	27360		117			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(160)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7555541992188	2	528.755149	1055.49575	0.31267	0.00016532	-0.0023793	-1.2581E-06	0.31029	0.00016407	528.7550412365239	61.544	1.5437	61.544	61.032	62.575	0					95	69	2	0	0	0	3.513E-06	5	13786	13737;13786;13824;13868;13921		155.03	101.19	1	2136800			20158	1945	13319	13458	27363;27364;27365;27366;27367	27364		117			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(130)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.755126953125	2	528.755149	1055.49575	0.19662	0.00010396	0.14528	7.6816E-05	0.3419	0.00018078	528.7551688188029	60.213	1.0847	60.286	59.826	60.91	0.073421					93	38	3	0	0	0	0.00061878	3	13278	13234;13278;13349		129.77	87.933	1	651040			20159	1945	13319	13458	27368;27369;27370	27369		117			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(140)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.755126953125	2	528.755149	1055.49575	0.27913	0.00014759	0.079172	4.1863E-05	0.3583	0.00018945	528.755056403761	61.47	1.8087	61.544	60.851	62.66	0.073418					132	79	2	0	0	0	1.7199E-05	5	13654	13561;13609;13654;13699;13744		142.08	88.247	1	1192800			20160	1945	13319	13458	27371;27372;27373;27374;27375	27373		117			-0.029781999080341848
SYSPLLREF	9	Unmodified	_SYSPLLREF_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2925415039062	2	556.292756	1110.57096	0.52614	0.00029269	-1.4431	-0.00080278	-0.91694	-0.00051009	556.2927297143212	61.216	0.38651	61.216	61.002	61.389	0					23	13	2	0	0	0	0.029591	1	13719	13719		51.415	21.575	1	98454			20161	2482	13320	13459	27376	27376					0.02009725614720992
SYSPLLREF	9	Unmodified	_SYSPLLREF_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.29248046875	2	556.292756	1110.57096	0.50884	0.00028307	-1.6742	-0.00093134	-1.1654	-0.00064828	556.2926013909715	61.059	0.4134	61.133	61	61.414	0.073418					31	13	3	0	0	0	0.07372	1	13548	13548		38.176	15.439	1	156600			20162	2482	13320	13459	27377	27377					0.02009725614720992
SYSPQAFKF	9	Unmodified	_SYSPQAFKF_					0	0	0		ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF	ENSG00000131023|ENST00000543571|LATS1	ENSG00000131023|ENST00000543571|LATS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7674560546875	2	537.766374	1073.5182	0.62236	0.00033469	0.49439	0.00026587	1.1168	0.00060055	537.7664015357485	54.896	0.75948	54.896	54.682	55.441	0					43	27	3	0	0	0	0.065576	1	11857	11857		39.95	7.6442	1	311880			20163	2510	13321	13460	27378	27378					-0.01562232448100076
SYSPQAFKF	9	Unmodified	_SYSPQAFKF_					0	0	0		ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF	ENSG00000131023|ENST00000543571|LATS1	ENSG00000131023|ENST00000543571|LATS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7666015625	2	537.766374	1073.5182	0.8027	0.00043166	-0.006173	-3.3196E-06	0.79652	0.00042834	537.7662743124355	54.868	0.52979	54.933	54.738	55.268	0.065128					41	21	3	0	0	0	0.0081278	2	11656	11656;11719		72.968	33.011	1	262740			20164	2510	13321	13460	27379;27380	27379					-0.01562232448100076
SYSPYAFKFF	10	Unmodified	_SYSPYAFKFF_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.8284301757812	2	628.802957	1255.59136	0.42125	0.00026488	-1.9499	-0.0012261	-1.5287	-0.00096123	628.8021730090107	74.611	0.27538	74.66	74.482	74.757	0.048538					10	9	2	0	0	0	0.31667	1	17647	17647		8.7454	4.5559	1	51251			20165	3428	13322	13461	27381	27381					-0.02621103725505236
SYSQGASAPF	10	Unmodified	_SYSQGASAPF_					0	0	0			REV__CFHR4|p.A47S|1|0.14|ENSG00000134365|chr1:196902501-196902501|G/T|missense_variant	REV__CFHR4|p.A47S|1|0.14|ENSG00000134365|chr1:196902501-196902501|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7300109863281	2	507.729989	1013.44543	-0.39302	-0.00019955	1.4712	0.00074696	1.0782	0.00054741	507.73077788351355	42.706	0.66514	42.706	42.454	43.119	0					43	22	3	0	0	0	0.34138	1	8089	8089		18.146	1.2041	1	95920	+		20166	7762	13323	13462	27382	27382					-0.0607598624151251
SYSQGASAPF	10	Unmodified	_SYSQGASAPF_					0	0	0			REV__CFHR4|p.A47S|1|0.14|ENSG00000134365|chr1:196902501-196902501|G/T|missense_variant	REV__CFHR4|p.A47S|1|0.14|ENSG00000134365|chr1:196902501-196902501|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.730224609375	2	507.729989	1013.44543	-0.23403	-0.00011883	1.4305	0.00072631	1.1965	0.00060749	507.7306713241784	42.593	0.59951	42.682	42.492	43.092	0.089764					34	22	2	0	0	0	0.36006	1	7940	7940		16.149	0.30192	1	89992	+		20167	7762	13323	13462	27383	27383					-0.0607598624151251
SYSQGASAPF	10	Unmodified	_SYSQGASAPF_					0	0	0			REV__CFHR4|p.A47S|1|0.14|ENSG00000134365|chr1:196902501-196902501|G/T|missense_variant	REV__CFHR4|p.A47S|1|0.14|ENSG00000134365|chr1:196902501-196902501|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	507.729989	1013.44543	-0.39302	-0.00019955	1.4712	0.00074696	1.0782	0.00054741	507.73077788351355	42.706	0.66514	42.706	42.454	43.119	0	0.011851	1.7521E-05	NaN	18.146	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95920	+		20168	7762	13323	13462							-0.0607598624151251
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7359008789062	2	516.735271	1031.45599	0.64365	0.0003326	1.0242	0.00052925	1.6679	0.00086184	516.7353473480143	54.693	0.59187	54.693	54.467	55.059	0					64	26	3	0	0	0	0.0045978	2	11746	11746;11791		87.258	23.298	1	319850			20169	4499	13324	13463	27384;27385	27384					-0.05848003587107087
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7356567382812	2	516.735271	1031.45599	0.63247	0.00032682	0.47381	0.00024483	1.1063	0.00057165	516.7353306558674	54.667	0.59805	54.733	54.563	55.161	0.065128					76	27	4	0	0	0	0.00648	1	11607	11607		78.06	22.558	1	343930			20170	4499	13324	13463	27386	27386					-0.05848003587107087
SYSSEEMIF	9	Unmodified	_SYSSEEMIF_					0	0	0		ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.732421875	2	546.73134	1091.44813	0.44206	0.00024169	1.7973	0.00098263	2.2393	0.0012243	546.732143376787	96.608	0.3858	96.608	96.465	96.851	0					33	16	3	0	0	0	0.25979	1	24537	24537		11.64	0	1	158890			20171	780	13325	13464	27387	27387					-0.0939389889888389
SYSSEEMIF	9	Unmodified	_SYSSEEMIF_					0	0	0		ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	546.73134	1091.44813	0.46695	0.0002553	1.3528	0.00073963	1.8198	0.00099493	546.7319223705643	96.658	0.36834	96.698	96.472	96.841	0.039772	0.04478	-0.00026643	NaN	11.64	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241690			20172	780	13325	13464							-0.0939389889888389
SYSSTFHSL	9	Unmodified	_SYSSTFHSL_					0	0	0		ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF	ENSG00000162825|ENST00000698833|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.738037109375	2	514.737814	1027.46108	-0.061669	-3.1743E-05	0.7116	0.00036629	0.64993	0.00033454	514.7381664032615	43.415	1.3533	43.415	43.091	44.444	0					85	47	3	0	0	0	0.01943	1	8331	8331		58.679	38.225	1	330380			20173	3862	13326	13465	27388	27388					-0.05155699724468832
SYSSTFHSL	9	Unmodified	_SYSSTFHSL_					0	0	0		ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF	ENSG00000162825|ENST00000698833|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7381591796875	2	514.737814	1027.46108	0.010487	5.3978E-06	0.6571	0.00033823	0.66759	0.00034363	514.738132471861	43.37	0.79036	43.459	43.186	43.977	0.089184					49	28	3	0	0	0	0.047633	1	8161	8161		43.858	21.122	1	262490			20174	3862	13326	13465	27389	27389					-0.05155699724468832
SYTFEFHF	8	Unmodified	_SYTFEFHF_					0	0	0		ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2682495117188	2	539.23745	1076.46035	0.60843	0.00032809	-0.28573	-0.00015408	0.3227	0.00017401	539.2371219764614	78.296	0.51326	78.326	78.138	78.651	0.030159					27	17	3	0	0	0	0.3576	1	18815	18815		5.7604	1.0044	1	156340			20175	5074	13327	13466	27390	27390					-0.07482494373516602
SYTFQTFSF	9	Unmodified	_SYTFQTFSF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK;ENST00000462685.1_1_2:74173872-74185284:+|nuORF;ENST00000493055.1_1_2:74154037-74174034:+|nuORF;nc|ENSG00000114956|Q16854-4|DGUOK;nc|ENSG00000114956|Q16854-2|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7579345703125	2	564.25584	1126.49713	0.78398	0.00044237	2.3569	0.0013299	3.1409	0.0017723	564.2568769328605	81.457	0.57095	81.457	81.145	81.716	0					25	19	2	0	0	0	0.24366	1	19873	19873		13.042	2.2185	1	105480			20176	1866	13328	13467	27391	27391					-0.06106242547616603
SYTFQTFSF	9	Unmodified	_SYTFQTFSF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK;ENST00000462685.1_1_2:74173872-74185284:+|nuORF;ENST00000493055.1_1_2:74154037-74174034:+|nuORF;nc|ENSG00000114956|Q16854-4|DGUOK;nc|ENSG00000114956|Q16854-2|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	564.25584	1126.49713	0.47101	0.00026577	4.2746	0.002412	4.7456	0.0026778	564.257092693282	81.475	0.48372	81.497	81.308	81.792	0.021866	0.020004	0.0013373	NaN	13.042	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115470			20177	1866	13328	13467							-0.06106242547616603
SYTHIQYLF	9	Unmodified	_SYTHIQYLF_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.292724609375	2	586.292756	1170.57096	0.74486	0.00043671	-1.1096	-0.00065058	-0.36479	-0.00021387	586.2918853025101	64.14	0.78893	64.14	63.844	64.632	0					60	27	3	0	0	0	0.10833	1	14660	14660		30.637	7.9003	1	524350			20178	1098	13329	13468	27392	27392					-0.007502743853137872
SYTIMTCLF	9	Unmodified	_SYTIMTCLF_					0	0	0			REV__ENST00000319332.9_1_3:189705443-189706767:-|nuORF	REV__ENST00000319332.9_1_3:189705443-189706767:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2676391601562	2	539.751021	1077.48749	0.19773	0.00010672	4.1529	0.0022415	4.3506	0.0023482	540.2555827975625	73.832	0.34537	73.832	73.661	74.006	0					26	11	3	0	0	0	0.25051	1	17603	17603		7.9102	0.62092	1	201710	+		20179	11389	13330	13469	27393	27393					-0.048154701490148
SYTLLFAYF	9	Unmodified	_SYTLLFAYF_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.7869873046875	2	562.786776	1123.559	0.38067	0.00021424	-1.4983	-0.00084324	-1.1177	-0.000629	562.78602540403	101.17	0.85593	101.17	100.61	101.47	0					117	51	3	0	0	0	0.017037	2	25847	25803;25847		60.39	28.084	1	413360			20180	2040	13331	13470	27394;27395	27395					0.0021610887151837233
SYTLLFAYF	9	Unmodified	_SYTLLFAYF_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7866821289062	2	562.786776	1123.559	0.51222	0.00028827	-0.73258	-0.00041229	-0.22036	-0.00012402	562.7860709978738	100.97	0.63725	101.02	100.76	101.4	0.042839					96	37	4	0	0	0	0.030375	3	25677	25637;25677;25718		50.855	18.55	1	347340			20181	2040	13331	13470	27396;27397;27398	27397					0.0021610887151837233
SYTRTSTN	8	Unmodified	_SYTRTSTN_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000038253	REV__CON__ENSEMBL:ENSBTAP00000038253	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2327575683594	2	465.219788	928.425024	-0.27624	-0.00012851	-0.37888	-0.00017626	-0.65512	-0.00030477	465.219671585017	21.264	1.3151	21.264	21.078	22.393	0					352	128	6	0	0	0	0.53817	2	1922	1922;1958		2.5775	0	1	1359200	+	+	20182	7832	13332	13471	27399;27400	27399					-0.0420515690133243
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.27783203125	2	566.774731	1131.53491	-0.049631	-2.813E-05	1.6546	0.0009378	1.605	0.00090967	567.2777687959781	106.26	0.48954	106.26	105.96	106.45	0					64	44	2	0	0	0	0.27929	1	27438	27438		9.3831	0.63772	1	105030	+		20183	12992	13333	13472	27401	27401					-0.025597315621553207
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.775634765625	2	566.774731	1131.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.865	1	70.865	70.365	71.365	0								0	0	0	0.19239	1	16669	16669		19.257	1.1106	1		+		20184	12992	13333	13472	27402	27402					-0.025597315621553207
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7750244140625	2	566.774731	1131.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.38	1	105.38	104.88	105.88	0								0	0	0	0.24978	1	27146	27146		9.3831	0	1		+		20185	12992	13333	13472	27403	27403					-0.025597315621553207
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7749633789062	2	566.774731	1131.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.04	1	113.04	112.54	113.54	0								0	0	0	0.24978	1	28970	28970		9.3831	2.0939	1		+		20186	12992	13333	13472	27404	27404					-0.025597315621553207
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7753295898438	2	566.774731	1131.53491	0.071689	4.0631E-05	1.8239	0.0010337	1.8956	0.0010743	567.277805980436	104.56	0.83487	104.56	103.96	104.79	0					108	79	2	0	0	0	0.24929	1	26795	26795		9.3831	0.63772	1	73018	+		20187	12992	13333	13472	27405	27405					-0.025597315621553207
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2979736328125	2	566.774731	1131.53491	0.49722	0.00028181	1.4572	0.00082589	1.9544	0.0011077	567.2776207050172	98.398	0.69894	98.398	98.087	98.786	0					54	37	2	0	0	0	0.2418	1	25105	25105		13.906	0.86358	1	84416	+		20188	12992	13333	13472	27406	27406					-0.025597315621553207
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7479858398438	2	566.774731	1131.53491	0.61804	0.00035029	2.0019	0.0011346	2.62	0.0014849	566.7743845305939	81.871	1.9373	81.871	81.235	83.173	0					127	67	3	0	0	0	0.21622	1	20233	20233		21.537	7.6309	1	145590	+		20189	12992	13333	13472	27407	27407					-0.025597315621553207
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7741088867188	2	566.774731	1131.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.6	1	106.62	106.12	107.12	0.025711								0	0	0	0.24978	1	27293	27293		9.3831	0	1		+		20190	12992	13333	13472	27408	27408					-0.025597315621553207
SYTRYGLSW	9	Unmodified	_SYTRYGLSW_					0	0	0			REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3302001953125	2	566.774731	1131.53491	0.19447	0.00011022	0.73544	0.00041683	0.92991	0.00052705	566.7743971664477	87.301	1.1808	87.329	86.927	88.108	0.027573					57	46	2	0	0	0	0.2418	1	21664	21664		13.906	8.6754	1	92429	+		20191	12992	13333	13472	27409	27409					-0.025597315621553207
SYTSGLETL	9	Unmodified	_SYTSGLETL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7400207519531	2	485.740022	969.465492	-0.0085143	-4.1357E-06	0.19543	9.4929E-05	0.18692	9.0793E-05	485.74003631411983	59.499	1.476	59.499	59.219	60.695	0					119	55	4	0	0	0	8.832E-06	5	13205	13155;13205;13249;13299;13357		149.99	95.221	1	1754700			20192	1110	13334	13473	27410;27411;27412;27413;27414	27411					-0.020462353015659573
SYTSGLETL	9	Unmodified	_SYTSGLETL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.739990234375	2	485.740022	969.465492	-0.040401	-1.9625E-05	0.25875	0.00012568	0.21835	0.00010606	485.74007201611175	59.367	1.4166	59.44	59.161	60.577	0.072338					107	53	4	0	0	0	1.7467E-05	4	13051	13000;13051;13099;13148		141.83	93.481	1	1367100			20193	1110	13334	13473	27415;27416;27417;27418	27416					-0.020462353015659573
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.758544921875	2	537.758746	1073.50294	0.24977	0.00013432	-0.65584	-0.00035268	-0.40606	-0.00021836	537.7582749212135	38.892	0.80417	38.892	38.657	39.461	0					84	30	4	0	0	0	0.0045224	2	6942	6930;6942		90.135	54.008	1	589800			20194	1765	13335	13474	27419;27420	27420					-0.030871440359533153
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7586059570312	2	537.758746	1073.50294	0.48364	0.00026008	-0.68997	-0.00037104	-0.20633	-0.00011096	537.7582543023605	38.78	0.87696	38.867	38.595	39.472	0.08688					86	34	4	0	0	0	0.0056336	1	6793	6793		80.676	53.047	1	523030			20195	1765	13335	13474	27421	27421					-0.030871440359533153
SYTSVLSRL	9	Unmodified	_SYTSVLSRL_					0	0	0		ENST00000587974.1_1_18:43487913-43547205:-|nuORF;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7685546875	2	513.284931	1024.55531	0.52628	0.00027013	0.26738	0.00013724	0.79366	0.00040737	513.2851017039533	57.579	0.30598	57.579	57.434	57.74	0					18	10	2	0	0	0	0.26104	1	12666	12666		11.495	2.7493	1	61146			20196	3490	13336	13475	27422	27422					0.044014390976599316
SYTSVLSRL	9	Unmodified	_SYTSVLSRL_					0	0	0		ENST00000587974.1_1_18:43487913-43547205:-|nuORF;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.285400390625	2	513.284931	1024.55531	0.3773	0.00019366	0.95382	0.00048958	1.3311	0.00068324	513.2852741915589	57.499	0.34197	57.567	57.437	57.779	0.068375					14	11	2	0	0	0	0.18151	1	12478	12478		29.841	11.694	1	66208			20197	3490	13336	13475	27423	27423					0.044014390976599316
SYTYLSLGF	9	Unmodified	_SYTYLSLGF_					0	0	0		FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant;ENSG00000087086|ENST00000331825|FTL	FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7611083984375	2	525.760758	1049.50696	0.64568	0.00033948	0.1289	6.7773E-05	0.77459	0.00040725	525.7607037004498	84.064	0.41458	84.064	83.868	84.283	0					34	15	3	0	0	0	0.024893	1	20713	20713		54.774	27.89	1	426560			20198	986	13337	13476	27424	27424					-0.015810545422255018
SYTYLSLGF	9	Unmodified	_SYTYLSLGF_					0	0	0		FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant;ENSG00000087086|ENST00000331825|FTL	FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7609252929688	2	525.760758	1049.50696	0.25532	0.00013424	0.56774	0.0002985	0.82307	0.00043274	525.7609369767661	84.099	0.42928	84.121	83.866	84.295	0.021744					42	15	4	0	0	0	0.011655	1	20548	20548		64.236	30.134	1	491790			20199	986	13337	13476	27425	27425					-0.015810545422255018
SYVAGIAWF	9	Unmodified	_SYVAGIAWF_					0	0	0		ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENSG00000197858|ENST00000355091|GPAA1	ENST00000532758.5_1_8:145137633-145138586:+|nuORF	ENST00000532758.5_1_8:145137633-145138586:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.26788330078125	2	507.258185	1012.50182	0.32391	0.00016431	-0.90069	-0.00045688	-0.57678	-0.00029258	507.25760149869046	88.441	0.56976	88.471	88.251	88.82	0.030037					40	22	2	0	0	0	0.22289	1	21835	21835		18.135	0	1	195500			20200	5324	13338	13477	27426	27426					-0.003933136141995419
SYVASFFLL	9	Unmodified	_SYVASFFLL_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7815551757812	2	523.781493	1045.54843	0.55875	0.00029266	-0.34665	-0.00018157	0.2121	0.00011109	523.7813243383717	98.168	0.47063	98.168	97.887	98.357	0					46	24	3	0	0	0	0.028398	1	25004	25004		52.268	29.12	1	150260			20201	112	13339	13478	27427	27427					0.027481262171022536
SYVASFFLL	9	Unmodified	_SYVASFFLL_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.78173828125	2	523.781493	1045.54843	0.45874	0.00024028	-0.19906	-0.00010426	0.25968	0.00013602	523.781261435631	98.062	0.48775	98.104	97.916	98.404	0.041931					49	25	4	0	0	0	0.015682	1	24830	24830		61.357	21.4	1	117230			20202	112	13339	13478	27428	27428					0.027481262171022536
SYVDLVEGLHD	11	Unmodified	_SYVDLVEGLHD_					0	0	0		ENST00000496443.5_1_2:220111358-220112169:+|nuORF;ENST00000475342.5_1_2:220110721-220112169:+|nuORF;ENST00000461417.5_1_2:220110721-220111658:+|nuORF;ENST00000496800.5_1_2:220110721-220112335:+|nuORF;ENST00000475696.5_1_2:220110721-220112662:+|nuORF;ENSG00000115661|ENST00000396738|STK16	ENST00000496443.5_1_2:220111358-220112169:+|nuORF	ENST00000496443.5_1_2:220111358-220112169:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.801025390625	2	623.801143	1245.58773	-0.21893	-0.00013657	0.023373	1.458E-05	-0.19556	-0.00012199	623.8010622559275	86.669	0.51261	86.669	86.438	86.95	0					58	20	4	0	0	0	0.39744	1	21462	21462		4.897	0.95262	1	2088800			20203	1918	13340	13479	27429	27429					-0.025238182900011452
SYVDLVEGLHD	11	Unmodified	_SYVDLVEGLHD_					0	0	0		ENST00000496443.5_1_2:220111358-220112169:+|nuORF;ENST00000475342.5_1_2:220110721-220112169:+|nuORF;ENST00000461417.5_1_2:220110721-220111658:+|nuORF;ENST00000496800.5_1_2:220110721-220112335:+|nuORF;ENST00000475696.5_1_2:220110721-220112662:+|nuORF;ENSG00000115661|ENST00000396738|STK16	ENST00000496443.5_1_2:220111358-220112169:+|nuORF	ENST00000496443.5_1_2:220111358-220112169:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.8009033203125	2	623.801143	1245.58773	0.1038	6.4751E-05	-0.20574	-0.00012834	-0.10194	-6.3589E-05	623.8009267161789	86.649	0.45603	86.676	86.45	86.906	0.027573					67	20	4	0	0	0	0.39744	1	21296	21296		4.897	2.1618	1	2114700			20204	1918	13340	13479	27430	27430					-0.025238182900011452
SYVGLVYMF	9	Oxidation (M)	_SYVGLVYM(Oxidation (M))F_		SYVGLVYM(1)F		SYVGLVYM(47)F	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7756958007812	2	547.764986	1093.51542	0.47503	0.00026021	-0.50451	-0.00027635	-0.029471	-1.6143E-05	547.7648210552011	83.082	0.72704	83.082	82.792	83.519	0					42	24	2	0	0	0	0.035878	1	20381	20381		46.921	26.467	1	160070			20205	1620	13341	13480	27431	27431		96			-0.027598238972814215
SYVGLVYMF	9	Oxidation (M)	_SYVGLVYM(Oxidation (M))F_		SYVGLVYM(1)F		SYVGLVYM(47)F	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.775146484375	2	547.764986	1093.51542	0.61329	0.00033594	0.56031	0.00030692	1.1736	0.00064286	547.7656347891534	81.145	0.2061	81.169	81.023	81.229	0.023605					9	6	2	0	0	0	0.035878	1	19633	19633		46.921	18.434	1	176950			20206	1620	13341	13480	27432	27432		96			-0.027598238972814215
SYVGLVYMF	9	Oxidation (M)	_SYVGLVYM(Oxidation (M))F_		SYVGLVYM(1)F		SYVGLVYM(57)F	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7757568359375	2	547.764986	1093.51542	0.34394	0.0001884	-0.52994	-0.00029028	-0.186	-0.00010188	547.7648716776173	82.945	0.76582	82.966	82.823	83.589	0.021744					44	26	2	0	0	0	0.02242	2	20210	20210;20256		56.541	31.867	1	161910			20207	1620	13341	13480	27433;27434	27433		96			-0.027598238972814215
SYVHKVPSF	9	Unmodified	_SYVHKVPSF_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2677001953125	2	532.282192	1062.54983	0.37954	0.00020202	0.12876	6.8536E-05	0.50829	0.00027056	532.7838088855698	62.049	1.0685	62.049	61.714	62.783	0					58	40	2	0	0	0	0.26684	1	14174	14174		10.824	2.2306	1	218130			20208	2203	13342	13481	27435	27435					0.021057603058579843
SYVLAFSEK	9	Unmodified	_SYVLAFSEK_					0	0	0		tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2428588867188	2	522.274032	1042.53351	-0.61065	-0.00031893	-0.25181	-0.00013152	-0.86247	-0.00045044	522.7769953647717	41.802	0.35876	41.802	41.609	41.968	0					18	12	2	0	0	0	0.25281	1	7862	7862		6.7232	1.4925	1	39038			20209	13674	13343	13482	27436	27436					0.013946343490943036
SYVLKQEIQ	9	Unmodified	_SYVLKQEIQ_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2782592773438	2	554.305864	1106.59717	0.46148	0.0002558	2.6614	0.0014753	3.1229	0.0017311	554.3074241894361	96.149	0.089859	96.149	96.07	96.16	0					6	3	2	0	0	0	0.24635	1	24377	24377		6.7232	0	1	29494			20210	3427	13344	13483	27437	27437					0.04813994786195508
SYVNHLYVI	9	Unmodified	_SYVNHLYVI_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2952270507812	2	554.295299	1106.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.878	1	58.878	58.378	59.378	0								0	0	0	0.12644	1	13013	13013		29.082	4.4077	1				20211	2778	13345	13484	27438	27438					0.027020294773365094
SYVNHLYVI	9	Unmodified	_SYVNHLYVI_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.294921875	2	554.295299	1106.57605	0.41691	0.00023109	-0.53304	-0.00029546	-0.11613	-6.4371E-05	554.2950570823508	58.75	0.3422	58.82	58.627	58.969	0.070477					22	11	3	0	0	0	0.19398	1	12845	12845		19.257	2.3147	1	200060			20212	2778	13345	13484	27439	27439					0.027020294773365094
SYVPQTNTW	9	Unmodified	_SYVPQTNTW_					0	0	0		ENST00000471654.1_1_2:23914526-23929531:+|nuORF;ENSG00000119771|ENST00000486442|KLHL29	ENST00000471654.1_1_2:23914526-23929531:+|nuORF	ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.26025390625	2	548.258914	1094.50327	0.68301	0.00037447	2.1225	0.0011637	2.8056	0.0015382	548.2600776494706	80.919	0.30981	80.943	80.771	81.08	0.023605					20	10	2	0	0	0	0.2125	1	19574	19574		17.113	4.0704	1	109280			20213	2087	13346	13485	27440	27440					-0.04019724316094653
SYVQTLVYI	9	Unmodified	_SYVQTLVYI_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2975463867188	2	543.297507	1084.58046	0.28085	0.00015258	0.065879	3.5792E-05	0.34673	0.00018838	543.2974747687206	78.672	0.55849	78.672	78.423	78.982	0					50	19	3	0	0	0	0.005983	1	19034	19034		79.596	35.738	1	794970			20214	5461	13347	13486	27441	27441					0.04155493900248075
SYVQTLVYI	9	Unmodified	_SYVQTLVYI_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2976684570312	2	543.297507	1084.58046	0.4359	0.00023682	-0.21265	-0.00011553	0.22324	0.00012129	543.2972627327739	78.6	0.6435	78.63	78.374	79.018	0.030159					42	22	3	0	0	0	0.0077293	2	18865	18865;18911		74.2	38.073	1	755610			20215	5461	13347	13486	27442;27443	27442					0.04155493900248075
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7540283203125	2	522.753464	1043.49238	-0.10749	-5.6192E-05	0.241	0.00012598	0.13351	6.9791E-05	522.7535048652328	58.729	0.68816	58.729	58.506	59.194	0					49	24	3	0	0	0	0.0042454	2	12954	12954;13090		100.71	52.96	1	524690			20216	784	13348	13487	27444;27445	27444					-0.027631266903881624
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7537231445312	2	522.753464	1043.49238	0.11838	6.1886E-05	0.20309	0.00010617	0.32147	0.00016805	522.7535291665567	58.656	0.7642	58.726	58.505	59.27	0.070477					48	28	3	0	0	0	0.0043973	2	12803	12803;12808		94.909	51.135	1	546350			20217	784	13348	13487	27446;27447	27446					-0.027631266903881624
SYVRELMTY	9	Unmodified	_SYVRELMTY_					0	0	0		nc|ENSG00000172728|Q6P4F1-3|FUT10;nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-6|FUT10;ENSG00000172728|ENST00000327671|FUT10;nc|ENSG00000172728|Q6P4F1-2|FUT10	nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-3|FUT10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.285400390625	2	581.284074	1160.5536	0.69984	0.0004068	1.0973	0.00063786	1.7972	0.0010447	581.2846533326699	100.02	0.39586	100.07	99.924	100.32	0.042839					48	20	3	0	0	0	0.22083	1	25401	25401		16.149	0	1	156660			20218	4509	13349	13488	27448	27448					-0.02025937982580217
SYVRSLPFF	9	Unmodified	_SYVRSLPFF_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.298095703125	2	558.297842	1114.58113	0.63359	0.00035373	1.7972	0.0010034	2.4308	0.0013571	558.2976549054899	70.039	1.5952	70.039	69.791	71.386	0					199	57	7	0	0	0	0.004443	4	16446	16446;16495;16543;16767		93.166	50.643	1	3917200			20219	4373	13350	13489	27449;27450;27451;27452	27449					0.028423333399587136
SYVRSLPFF	9	Unmodified	_SYVRSLPFF_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.298095703125	2	558.297842	1114.58113	0.61125	0.00034126	1.9734	0.0011017	2.5846	0.001443	558.2976584189023	69.992	1.6526	70.052	69.695	71.348	0.060562					195	64	6	0	0	0	0.004443	7	16215	16215;16259;16297;16344;16398;16539;16597		93.166	59.063	1	3390500			20220	4373	13350	13489	27453;27454;27455;27456;27457;27458;27459	27453					0.028423333399587136
SYVTVGELW	9	Unmodified	_SYVTVGELW_					0	0	0		ENSG00000165349|ENST00000374299|SLC7A3;ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000165349|ENST00000374299|SLC7A3;ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7823486328125	2	527.266207	1052.51786	0.17785	9.3777E-05	-1.1369	-0.00059943	-0.959	-0.00050565	527.2654540438755	79.216	0.45122	79.242	79.042	79.493	0.026436					19	15	2	0	0	0	0.13166	1	19053	19053		37.974	23.136	1	115080			20221	4079;2973	13351	13490	27460	27460					-0.006296521679587386
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(110)ETF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.743896484375	2	531.74425	1061.47395	0.41062	0.00021834	-0.18466	-9.8194E-05	0.22595	0.00012015	531.7441633674295	62.394	1.0068	62.394	62.018	63.025	0					67	36	3	0	0	0	0.0032694	2	14066	14066;14113		108	71.953	1	199250			20222	4248	13352	13491	27461;27462	27461		256			-0.05433004656606499
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(59)ETF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.282470703125	2	531.74425	1061.47395	0.31348	0.00016669	-0.40223	-0.00021388	-0.088745	-4.719E-05	531.7440117810935	59.686	0.50289	59.686	59.453	59.956	0					28	19	2	0	0	0	0.055474	1	13276	13276		58.679	36.932	1	236330			20223	4248	13352	13491	27463	27463		256			-0.05433004656606499
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(65)ETF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.743896484375	2	531.74425	1061.47395	0.29507	0.0001569	-0.37982	-0.00020197	-0.084746	-4.5063E-05	531.7440396487909	59.589	0.45454	59.662	59.457	59.911	0.072338					27	17	2	0	0	0	0.01063	1	13093	13093		65.235	43.488	1	188000			20224	4248	13352	13491	27464	27464		256			-0.05433004656606499
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(92)ETF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7440795898438	2	531.74425	1061.47395	0.46038	0.00024481	0.050696	2.6957E-05	0.51108	0.00027176	531.7442627535811	62.282	0.87838	62.356	62.028	62.907	0.073231					65	30	3	0	0	0	0.0044607	3	13937	13888;13937;13960		92.491	64.005	1	187240			20225	4248	13352	13491	27465;27466;27467	27466		256			-0.05433004656606499
SYVVTRLIK	9	Unmodified	_SYVVTRLIK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8333740234375	2	539.834591	1077.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.48	1	84.504	84.004	85.004	0.023125								0	0	0	0.24643	1	20666	20666		10.074	2.7847	1				20226	3593	13353	13492	27468	27468					0.11890881782414908
SYVWRTYHL	9	Unmodified	_SYVWRTYHL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.8768310546875	3	408.876857	1223.60874	0.37258	0.00015234	-0.40826	-0.00016693	-0.03568	-1.4589E-05	408.8766413639839	50.892	0.97203	50.892	50.68	51.652	0					91	32	5	0	0	0	0.17428	2	10564	10564;10612		20.581	4.8423	1	466610			20227	3807	13354	13493	27469;27470	27469					0.005882366001969785
SYVWRTYHL	9	Unmodified	_SYVWRTYHL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.2633056640625	2	612.811648	1223.60874	-0.045395	-2.7818E-05	0.030356	1.8603E-05	-0.015038	-9.2157E-06	612.8115945759115	50.919	0.4112	50.919	50.68	51.092	0					26	13	3	0	0	0	0.24492	1	10566	10566		19.362	11.206	1	125630			20228	3807	13354	13493	27471	27471					0.005882366001969785
SYVWRTYHL	9	Unmodified	_SYVWRTYHL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.8769226074219	3	408.876857	1223.60874	0.09076	3.711E-05	-0.25204	-0.00010306	-0.16128	-6.5945E-05	408.87676210513274	50.799	0.86843	50.869	50.635	51.503	0.069874					81	33	4	0	0	0	0.088609	2	10438	10399;10438		32.898	22.098	1	687820			20229	3807	13354	13493	27472;27473	27473					0.005882366001969785
SYVWRTYHL	9	Unmodified	_SYVWRTYHL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.8113403320312	2	612.811648	1223.60874	0.12046	7.3817E-05	-0.21149	-0.0001296	-0.091031	-5.5785E-05	612.8113739539684	50.786	0.43859	50.856	50.666	51.105	0.069878					36	16	4	0	0	0	0.12515	2	10417	10417;10460		27.223	14.181	1	151000			20230	3807	13354	13493	27474;27475	27474					0.005882366001969785
SYWWLGGLVI	10	Unmodified	_SYWWLGGLVI_					0	0	0		ENST00000511153.5_3_4:16004971-16040619:-|nuORF;nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1	ENST00000511153.5_3_4:16004971-16040619:-|nuORF	ENST00000511153.5_3_4:16004971-16040619:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.795166015625	2	597.321317	1192.62808	0.27514	0.00016435	-4.092	-0.0024443	-3.8169	-0.0022799	597.3189427365003	70.019	0.33948	70.079	69.94	70.279	0.060562					22	15	2	0	0	0	0.31585	1	16233	16233		10.824	2.9138	1	149880			20231	377	13355	13494	27476	27476					0.0394719289108707
SYYGPLNLLTF	11	Unmodified	_SYYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3347778320312	2	644.334621	1286.65469	0.42971	0.00027688	0.053124	3.4229E-05	0.48284	0.00031111	644.3348722676487	99.438	1.473	99.438	99.182	100.66	0					219	82	5	0	0	0	1.1099999999999999E-67	5	25355	25355;25394;25438;25633;25730		285.62	206.02	1	8097600			20232	3180	13356	13495	27477;27478;27479;27480;27481	27477					0.022828369917533564
SYYGPLNLLTF	11	Unmodified	_SYYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3358764648438	2	644.334621	1286.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.73	1	100.73	100.23	101.23	0								0	0	0	0.30758	1	25770	25770		12.175	5.5444	1				20233	3180	13356	13495	27482	27482					0.022828369917533564
SYYGPLNLLTF	11	Unmodified	_SYYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3349609375	2	644.334621	1286.65469	0.40858	0.00026326	0.050599	3.2603E-05	0.45918	0.00029586	644.3348690639405	99.422	1.3383	99.465	99.166	100.5	0.042839					246	82	5	0	0	0	3.3709E-54	10	25229	25145;25187;25229;25271;25291;25332;25376;25426;25470;25483		270.06	190.47	1	15391000			20234	3180	13356	13495	27483;27484;27485;27486;27487;27488;27489;27490;27491;27492	27485					0.022828369917533564
SYYGPLNLLTF	11	Unmodified	_SYYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3338623046875	2	644.334621	1286.65469	0.37748	0.00024322	-0.53928	-0.00034748	-0.1618	-0.00010425	644.3342599813943	100.43	0.38798	100.47	100.36	100.74	0.042831					33	22	2	0	0	0	0.082478	1	25543	25543		49.742	29.161	1	86004			20235	3180	13356	13495	27493	27493					0.022828369917533564
SYYKGCQSST	10	Unmodified	_SYYKGCQSST_					0	0	0			REV__nc|ENSG00000166452|Q9NQ31-2|AKIP1	REV__nc|ENSG00000166452|Q9NQ31-2|AKIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8101196289062	2	562.239864	1122.46517	0.51055	0.00028705	-1.7254	-0.00097007	-1.2148	-0.00068301	562.7404027889851	99.438	0.4103	99.438	99.193	99.604	0					35	23	2	0	0	0	0.31747	1	25366	25366		5.7319	1.4026	1	150740	+		20236	10080	13357	13496	27494	27494					-0.09115978293061744
SYYNITTF	8	Unmodified	_SYYNITTF_					0	0	0			REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.2770690917969	2	504.737283	1007.46001	0.21542	0.00010873	0.86098	0.00043457	1.0764	0.0005433	504.7371184267803	51.092	0.54114	51.162	50.909	51.451	0.069874					45	21	3	0	0	0	0.3576	1	10453	10453		8.5933	0	1	214190	+		20237	13047	13358	13497	27495	27495					-0.04341914093390642
SYYSSPFAFF	10	Unmodified	_SYYSSPFAFF_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.2725830078125	2	608.27149	1214.52843	0.64481	0.00039222	-0.085408	-5.1951E-05	0.5594	0.00034027	608.2714377316643	93.925	0.48434	93.925	93.71	94.195	0					34	24	2	0	0	0	0.055325	1	23707	23707		56.177	44.682	1	341950			20238	5471	13359	13498	27496	27496					-0.07025669513541288
SYYSSPFAFF	10	Unmodified	_SYYSSPFAFF_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.2716064453125	2	608.27149	1214.52843	0.67535	0.00041079	0.014279	8.6854E-06	0.68962	0.00041948	608.271485938698	93.919	0.53814	93.957	93.734	94.272	0.038094					42	26	2	0	0	0	0.015308	1	23549	23549		71.922	55.773	1	341450			20239	5471	13359	13498	27497	27497					-0.07025669513541288
TAAAENIRL	9	Unmodified	_TAAAENIRL_					0	0	0		ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6	ENSG00000091409|ENST00000684293|ITGA6	ENSG00000091409|ENST00000684293|ITGA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7690124511719	2	479.769448	957.524344	-0.62688	-0.00030076	0.31799	0.00015256	-0.30889	-0.0001482	479.76932480261996	40.879	0.54027	40.879	40.656	41.197	0					47	19	3	0	0	0	0.02143	1	7558	7558		57.249	29.62	1	129470			20240	161	13360	13499	27498	27498					0.04388285783409174
TAAAENIRL	9	Unmodified	_TAAAENIRL_					0	0	0		ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6	ENSG00000091409|ENST00000684293|ITGA6	ENSG00000091409|ENST00000684293|ITGA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7686767578125	2	479.769448	957.524344	-0.48033	-0.00023045	0.17119	8.2131E-05	-0.30914	-0.00014832	479.7693147135559	40.785	0.55349	40.874	40.657	41.211	0.089642					46	21	3	0	0	0	0.018465	2	7396	7396;7444		59.368	19.129	1	133920			20241	161	13360	13499	27499;27500	27499					0.04388285783409174
TAAAIGATPR	10	Unmodified	_TAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.7634582519531	2	464.764166	927.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.506	1	27.506	27.006	28.006	0								0	0	0	0.15281	1	3568	3568		37.075	11.675	1				20242	2854	13361	13500	27501	27501					0.04712303128974327
TAAAIGATPR	10	Unmodified	_TAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.7635803222656	2	464.764166	927.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.388	1	27.474	26.974	27.974	0.0867								0	0	0	0.00024675	1	3404	3404		97.741	44.424	1				20243	2854	13361	13500	27502	27502					0.04712303128974327
TAAAIGATPR	10	Unmodified	_TAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.76373291015625	2	464.764166	927.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.53	1	27.616	27.116	28.116	0.0867								0	0	0	0.32917	1	3444	3444		12.873	2.722	1				20244	2854	13361	13500	27503	27503					0.04712303128974327
TAADDHQAL	9	Unmodified	_TAADDHQAL_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.2193298339844	2	471.219788	940.425024	-0.40131	-0.00018911	-0.33254	-0.0001567	-0.73386	-0.00034581	471.21950913237913	24.572	0.42887	24.572	24.396	24.825	0					75	31	3	0	0	0	0.15482	2	2732	2694;2732		23.79	10.747	1	78883			20245	2794	13362	13501	27504;27505	27505					-0.047571569013484805
TAADDHQAL	9	Unmodified	_TAADDHQAL_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2196044921875	2	471.219788	940.425024	-0.28974	-0.00013653	-0.25533	-0.00012032	-0.54507	-0.00025685	471.21956202295604	24.392	0.45606	24.492	24.312	24.768	0.099739					90	39	3	0	0	0	0.28472	1	2553	2553		8.7454	1.4562	1	75817			20246	2794	13362	13501	27506	27506					-0.047571569013484805
TAADDSSVKL	10	Unmodified	_TAADDSSVKL_					0	0	0		ENST00000539960.1_1_11:60665249-60666641:-|nuORF;ENSG00000110107|ENST00000227524|PRPF19	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7563781738281	2	503.756204	1005.49785	-0.0008284	-4.1731E-07	0.036883	1.858E-05	0.036054	1.8163E-05	503.7563161768577	34.868	1.2147	34.868	34.621	35.836	0					113	44	5	0	0	0	1.8874E-07	4	5764	5717;5764;5811;5852		150.62	110.67	1	1919700			20247	1655	13363	13502	27507;27508;27509;27510	27508					-0.004674478985634778
TAADDSSVKL	10	Unmodified	_TAADDSSVKL_					0	0	0		ENST00000539960.1_1_11:60665249-60666641:-|nuORF;ENSG00000110107|ENST00000227524|PRPF19	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7563781738281	2	503.756204	1005.49785	0.058379	2.9409E-05	0.12202	6.1468E-05	0.1804	9.0876E-05	503.75631136876297	34.816	1.1814	34.892	34.66	35.841	0.076248					111	48	4	0	0	0	2.2499E-05	4	5626	5582;5626;5664;5708		128.58	80.83	1	1667800			20248	1655	13363	13502	27511;27512;27513;27514	27512					-0.004674478985634778
TAADLEFRF	9	Unmodified	_TAADLEFRF_					0	0	0		nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;ENST00000497247.1_1_4:154523305-154524605:+|nuORF;nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-6|TMEM131L	nc|ENSG00000121210|A2VDJ0-6|TMEM131L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.305419921875	2	535.269281	1068.52401	0.54923	0.00029398	-0.053428	-2.8598E-05	0.4958	0.00026539	535.2692423979088	63.536	0.27353	63.536	63.345	63.618	0					11	8	2	0	0	0	0.21599	1	14435	14435		22.658	7.8198	1	83100			20249	2147	13364	13503	27515	27515					-0.00751133936455517
TAADLEFRF	9	Unmodified	_TAADLEFRF_					0	0	0		nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;ENST00000497247.1_1_4:154523305-154524605:+|nuORF;nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-6|TMEM131L	nc|ENSG00000121210|A2VDJ0-6|TMEM131L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.3057250976562	2	535.269281	1068.52401	0.66676	0.0003569	-0.76812	-0.00041115	-0.10136	-5.4256E-05	535.2688441202504	63.389	0.39593	63.46	63.31	63.706	0.071018					20	14	2	0	0	0	0.24438	1	14266	14266		13.615	3.5409	1	120340			20250	2147	13364	13503	27516	27516					-0.00751133936455517
TAAEDNVRL	9	Unmodified	_TAAEDNVRL_					0	0	0		nc|ENSG00000163820|Q9BQS8-3|FYCO1;nc|ENSG00000163820|Q9BQS8-2|FYCO1;ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1	nc|ENSG00000163820|Q9BQS8-3|FYCO1	nc|ENSG00000163820|Q9BQS8-3|FYCO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7554626464844	2	494.756538	987.498523	0.23112	0.00011435	-1.2138	-0.00060056	-0.98272	-0.00048621	494.7559742896772	35.095	0.42544	35.174	35.058	35.483	0.078831					28	17	2	0	0	0	0.12515	2	5695	5695;5739		27.223	9.0769	1	48549			20251	3950	13365	13504	27517;27518	27517					0.004273915411431517
TAAEEFHVTL	10	Unmodified	_TAAEEFHVTL_					0	0	0			REV__nc|ENSG00000070269|Q9NX78-2|TMEM260	REV__nc|ENSG00000070269|Q9NX78-2|TMEM260	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7630004882812	2	559.279846	1116.54514	0.72008	0.00040272	3.4177	0.0019114	4.1378	0.0023142	559.2814658434902	65.99	0.51948	66.057	65.847	66.367	0.066872					38	19	3	0	0	0	0.27491	1	15055	15055		24.021	4.5816	1	422790	+		20252	8146	13366	13505	27519	27519					-0.00847168627569772
TAAEILFDEVL	11	Unmodified	_TAAEILFDEVL_					0	0	0		nc|ENSG00000138496|Q8IXQ6|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.2924194335938	2	610.824086	1219.63362	0.45704	0.00027917	-3.2881	-0.0020084	-2.8311	-0.0017293	610.8216422396616	93.756	0.11163	93.756	93.658	93.77	0					5	3	2	0	0	0	0.30229	1	23617	23617		19.362	4.9566	1	60108			20253	7510	13367	13506	27520	27520					0.03258826892238176
TAAENEFVAL	10	Unmodified	_TAAENEFVAL_					0	0	0		ENSG00000170454|ENST00000252245|KRT75;CON__O95678	ENSG00000170454|ENST00000252245|KRT75	ENSG00000170454|ENST00000252245|KRT75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7669677734375	2	532.766571	1063.51859	0.77525	0.00041303	0.050768	2.7048E-05	0.82602	0.00044007	532.7665012890209	66.068	0.62671	66.068	65.879	66.506	0					47	22	3	0	0	0	0.07941	3	15231	15182;15231;15292		49.554	0	1	387250		+	20254	211	13368	13507	27521;27522;27523	27522					-0.010628575189002731
TAAENEFVAL	10	Unmodified	_TAAENEFVAL_					0	0	0		ENSG00000170454|ENST00000252245|KRT75;CON__O95678	ENSG00000170454|ENST00000252245|KRT75	ENSG00000170454|ENST00000252245|KRT75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.76708984375	2	532.766571	1063.51859	0.72662	0.00038712	0.20183	0.00010753	0.92845	0.00049465	532.7664864830103	66.001	0.79625	66.068	65.874	66.67	0.066872					60	30	3	0	0	0	0.086538	3	15047	15047;15093;15156		47.594	0	1	518290		+	20255	211	13368	13507	27524;27525;27526	27524					-0.010628575189002731
TAAENEFVT	9	Unmodified	_TAAENEFVT_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__P50446	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.230712890625	2	491.229822	980.445091	-0.17775	-8.7314E-05	1.4699	0.00072208	1.2922	0.00063476	491.23067587525645	44.546	0.47264	44.546	44.359	44.831	0					27	16	2	0	0	0	0.023873	2	8660	8641;8660		55.503	30.829	1	251630		+	20256	215	13369	13508	27527;27528	27528					-0.045914059613664904
TAAENEFVT	9	Unmodified	_TAAENEFVT_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__P50446	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.220947265625	2	491.229822	980.445091	-0.0033346	-1.638E-06	1.4238	0.0006994	1.4204	0.00069776	491.2305120628633	44.446	0.44899	44.533	44.334	44.783	0.087543					30	15	3	0	0	0	0.22083	1	8489	8489		16.149	1.3108	1	187800		+	20257	215	13369	13508	27529	27529					-0.045914059613664904
TAAENEFVTL	10	Unmodified	_TAAENEFVTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__P50446	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7728271484375	2	547.771854	1093.52915	0.75834	0.0004154	-0.29416	-0.00016113	0.46418	0.00025426	547.772095741099	65.897	3.5341	65.897	65.598	69.132	0					306	132	6	0	0	0	1.5959E-32	4	15210	15159;15210;15255;15307		228.37	150.22	1	51040000		+	20258	215	13370	13509	27530;27531;27532;27533	27531					-0.01386874864465426
TAAENEFVTL	10	Unmodified	_TAAENEFVTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__P50446	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7725219726562	2	547.771854	1093.52915	0.61124	0.00033482	-0.084549	-4.6314E-05	0.52669	0.00028851	547.7721978935825	65.837	3.6716	65.904	65.501	69.173	0.066872					342	137	6	0	0	0	1.5959E-32	5	14990	14990;15038;15078;15125;15165		228.37	150.22	1	49872000		+	20259	215	13370	13509	27534;27535;27536;27537;27538	27534					-0.01386874864465426
TAAFPVPDVF	10	Unmodified	_TAAFPVPDVF_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2765502929688	2	532.276575	1062.5386	0.16058	8.5471E-05	0.072219	3.844E-05	0.23279	0.00012391	532.2764687016652	86.492	0.30779	86.492	86.331	86.639	0					15	10	2	0	0	0	0.38912	1	21445	21445		13.042	5.1323	1	89336			20260	7497	13371	13510	27539	27539					0.009829382117231944
TAAFPVPDVF	10	Unmodified	_TAAFPVPDVF_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	532.276575	1062.5386	0.41643	0.00022166	0.24763	0.00013181	0.66407	0.00035347	532.2767557591121	86.55	0.34328	86.578	86.329	86.672	0.027573	0.042742	2.012E-05	NaN	13.042	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98314			20261	7497	13371	13510							0.009829382117231944
TAAGEAEAL	9	Unmodified	_TAAGEAEAL_					0	0	0		ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2277526855469	2	416.705983	831.397412	0.52134	0.00021725	-0.38181	-0.0001591	0.13953	5.8143E-05	416.70562006165125	38.205	0.3195	38.205	38.076	38.396	0					17	10	2	0	0	0	0.25281	1	6761	6761		6.7232	0	1	27802			20262	5463	13372	13511	27540	27540					-0.025030601615753767
TAAGEAEAL	9	Unmodified	_TAAGEAEAL_					0	0	0		ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	416.705983	831.397412	0.16899	7.0421E-05	0.37437	0.000156	0.54336	0.00022642	416.70587383516545	38.083	0.50087	38.167	37.984	38.485	0.084476	-0.018715	0.00032508	NaN	6.7232	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44861			20263	5463	13372	13511							-0.025030601615753767
TAAGGFQQR	9	Unmodified	_TAAGGFQQR_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.237548828125	2	468.238316	934.462078	-0.35722	-0.00016727	-0.95134	-0.00044546	-1.3086	-0.00061272	468.23769654582895	21.937	0.42472	21.937	21.802	22.227	0					70	40	2	0	0	0	0.26684	1	1984	1984		10.824	2.2306	1	44175			20264	1665	13373	13512	27541	27541					-0.007774405649115579
TAAGGFQQR	9	Unmodified	_TAAGGFQQR_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	468.238316	934.462078	-0.17174	-8.0416E-05	-0.59086	-0.00027666	-0.7626	-0.00035708	468.2379393611801	21.785	0.30303	21.887	21.74	22.043	0.10178	-0.025177	0.0001025	NaN	10.824	75	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46310			20265	1665	13373	13512							-0.007774405649115579
TAAGQGILSR	10	Unmodified	_TAAGQGILSR_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2750244140625	2	487.274898	972.535243	-0.25908	-0.00012624	0.49868	0.000243	0.23961	0.00011675	487.27511215050333	32.953	0.47376	32.953	32.801	33.275	0					38	18	3	0	0	0	0.336	1	5189	5189		18.721	8.6473	1	61229			20266	3480	13374	13513	27542	27542					0.04787688157705361
TAAGQGILSR	10	Unmodified	_TAAGQGILSR_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2751770019531	2	487.274898	972.535243	-0.21387	-0.00010421	0.34457	0.0001679	0.1307	6.3688E-05	487.2750074075948	32.926	0.39656	33.001	32.837	33.234	0.074322					26	15	2	0	0	0	0.37121	2	5028	5028;5071		14.957	7.047	1	66606			20267	3480	13374	13513	27543;27544	27543					0.04787688157705361
TAAHGPHWS	9	Unmodified	_TAAHGPHWS_					0	0	0		ENST00000592688.1_1_18:47376025-47376169:-|nuORF	ENST00000592688.1_1_18:47376025-47376169:-|nuORF	ENST00000592688.1_1_18:47376025-47376169:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.22491455078125	2	482.225208	962.435863	0.45019	0.0002171	-1.6376	-0.00078968	-1.1874	-0.00057259	482.22420958840394	65.94	0.77571	65.94	65.704	66.48	0					45	27	3	0	0	0	0.092418	1	15236	15236		34.102	3.4659	1	429390			20268	7273	13375	13514	27545	27545					-0.04685709736395438
TAAIEYYTTW	10	Unmodified	_TAAIEYYTTW_					0	0	0			REV__nc|ENSG00000151490|Q16827-5|PTPRO	REV__nc|ENSG00000151490|Q16827-5|PTPRO	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.3161010742188	2	609.787504	1217.56045	0.79649	0.00048569	0.1788	0.00010903	0.97528	0.00059472	609.787103885292	66.641	0.87641	66.641	66.387	67.263	0					54	33	2	0	0	0	0.2803	1	15397	15397		29.082	1.8583	1	425270	+		20269	9648	13376	13515	27546	27546					-0.03962301830392789
TAAIEYYTTW	10	Unmodified	_TAAIEYYTTW_					0	0	0			REV__nc|ENSG00000151490|Q16827-5|PTPRO	REV__nc|ENSG00000151490|Q16827-5|PTPRO	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.3161010742188	2	609.787504	1217.56045	0.79877	0.00048708	-0.12909	-7.8719E-05	0.66968	0.00040836	609.7870087624951	66.605	0.6217	66.67	66.502	67.124	0.065071					42	23	2	0	0	0	0.29345	1	15248	15248		24.021	1.2843	1	378770	+		20270	9648	13376	13515	27547	27547					-0.03962301830392789
TAASQEHGL	9	Unmodified	_TAASQEHGL_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20;nc|ENSG00000242485|Q9BYC9-2|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2220764160156	2	457.222331	912.430109	-0.15424	-7.052E-05	-0.34284	-0.00015675	-0.49707	-0.00022727	457.2221030926098	22.289	0.71926	22.289	22.086	22.805	0					112	59	3	0	0	0	0.17428	1	2080	2080		21.537	0	1	140450			20271	5653	13377	13516	27548	27548					-0.029608530387008614
TADEIQNTL	9	Unmodified	_TADEIQNTL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.7744140625	2	502.748379	1003.4822	0.15276	7.6801E-05	0.45686	0.00022969	0.60962	0.00030649	502.7485176562092	49.547	0.60167	49.547	49.367	49.968	0					31	20	2	0	0	0	0.14884	1	10198	10198		36.506	3.7205	1	159990			20272	2484	13378	13517	27549	27549					-0.019397344156004692
TADGAHFEL	9	Unmodified	_TADGAHFEL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7247619628906	2	480.724707	959.43486	0.082118	3.9476E-05	-0.36977	-0.00017776	-0.28765	-0.00013828	480.7244224359373	47.033	0.76815	47.033	46.789	47.557	0					60	26	3	0	0	0	0.0052407	3	9398	9398;9449;9496		81.89	54.261	1	460860			20273	971	13379	13518	27550;27551;27552	27550					-0.0464796889596073
TADGAHFEL	9	Unmodified	_TADGAHFEL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7247009277344	2	480.724707	959.43486	0.041663	2.0028E-05	-0.1802	-8.6627E-05	-0.13854	-6.6598E-05	480.72452227510354	46.95	0.74512	47.033	46.815	47.56	0.083096					54	28	3	0	0	0	0.0084662	2	9239	9239;9287		71.922	45.039	1	398970			20274	971	13379	13518	27553;27554	27553					-0.0464796889596073
TADKLYFVL	9	Unmodified	_TADKLYFVL_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000474427.6_1_6:134494022-134494280:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.3002319335938	2	535.30005	1068.58555	0.56741	0.00030373	-0.233	-0.00012473	0.3344	0.00017901	535.2998115998524	69.135	1.0689	69.135	68.692	69.761	0					85	38	4	0	0	0	0.081383	2	16124	16124;16184		36.506	10.815	1	847200			20275	7489	13380	13519	27555;27556	27555					0.05399797762856906
TADKLYFVL	9	Unmodified	_TADKLYFVL_					0	0	0		nc|ENSG00000118515|O00141|SGK1;ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000474427.6_1_6:134494022-134494280:-|nuORF	nc|ENSG00000118515|O00141|SGK1	nc|ENSG00000118515|O00141|SGK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.2999877929688	2	535.30005	1068.58555	0.45579	0.00024398	-0.24634	-0.00013186	0.20945	0.00011212	535.2998024352642	69.016	1.0045	69.078	68.852	69.857	0.062126					74	37	3	0	0	0	0.056368	1	15958	15958		41.956	23.809	1	1064700			20276	7489	13380	13519	27557	27557					0.05399797762856906
TADPGTTKHS	10	Unmodified	_TADPGTTKHS_					0	0	0		nc|ENSG00000228789|E2RYF7|HCG22	nc|ENSG00000228789|E2RYF7|HCG22	nc|ENSG00000228789|E2RYF7|HCG22	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2847595214844	2	507.74617	1013.47779	-0.088991	-4.5185E-05	-0.23228	-0.00011794	-0.32127	-0.00016312	507.7459304716027	25.248	0.28849	25.344	25.204	25.493	0.096073					40	25	2	0	0	0	0.31794	1	2795	2795		3.5965	0.31518	1	18762			20277	7608	13381	13520	27558	27558					-0.0284119883853009
TADPLDYRL	9	Unmodified	_TADPLDYRL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.27490234375	2	532.274564	1062.53457	0.38201	0.00020333	0.29186	0.00015535	0.67387	0.00035868	532.2745943869393	57.16	0.93853	57.16	56.916	57.855	0					95	33	4	0	0	0	0.0043442	3	12526	12483;12526;12589		96.936	56.986	1	2644200			20278	1678	13382	13521	27559;27560;27561	27560					0.0058084871798200766
TADPLDYRL	9	Unmodified	_TADPLDYRL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2747802734375	2	532.274564	1062.53457	0.54705	0.00029118	0.073331	3.9032E-05	0.62038	0.00033021	532.2745140458926	57.126	0.88631	57.194	56.916	57.802	0.068375					92	33	4	0	0	0	0.0045978	4	12356	12315;12356;12396;12463		87.258	47.309	1	2159800			20279	1678	13382	13521	27562;27563;27564;27565	27563					0.0058084871798200766
TADPSHQTM	9	Unmodified	_TADPSHQTM_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2135925292969	2	494.213649	986.412745	-0.13679	-6.7602E-05	0.65166	0.00032206	0.51488	0.00025446	494.21364911814265	22.605	1.5182	22.605	21.585	23.103	0					238	136	3	0	0	0	0.07372	4	2215	2148;2183;2215;2249		38.176	18.919	1	173440			20280	5207	13383	13522	27566;27567;27568;27569	27568					-0.08100516636011434
TADPSHQTM	9	Unmodified	_TADPSHQTM_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.21337890625	2	494.213649	986.412745	0.12735	6.2936E-05	0.054737	2.7052E-05	0.18208	8.9988E-05	494.21353908637644	22.417	0.65692	22.519	22.298	22.955	0.10178					143	60	3	0	0	0	0.10543	3	1997	1997;2031;2062		31.268	12.011	1	153060			20281	5207	13383	13522	27570;27571;27572	27570					-0.08100516636011434
TADPYERVDL	10	Unmodified	_TADPYERVDL_					0	0	0		ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2562255859375	2	589.788035	1177.56152	0.31346	0.00018487	-0.5292	-0.00031211	-0.21574	-0.00012724	589.7877646707839	48.714	0.39445	48.791	48.661	49.056	0.076607					29	13	3	0	0	0	0.31667	1	9806	9806		9.544	4.647	1	126890			20282	4817	13384	13523	27573	27573					-0.02016087461470306
TADTHALAD	9	Unmodified	_TADTHALAD_					0	0	0			REV__ENST00000509093.5_1_4:83956215-83956278:+|nuORF	REV__ENST00000509093.5_1_4:83956215-83956278:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.7140808105469	2	457.714339	913.414125	-0.034801	-1.5929E-05	-0.23402	-0.00010711	-0.26882	-0.00012304	457.7141328702145	28.044	0.50517	28.044	27.845	28.35	0					47	27	2	0	0	0	0.30005	1	3710	3710		6.7232	0	1	68744	+		20283	12245	13385	13524	27574	27574					-0.04604559275628617
TADVTSAVM	9	Oxidation (M)	_TADVTSAVM(Oxidation (M))_		TADVTSAVM(1)		TADVTSAVM(85)	0	0	1		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.7127990722656	2	455.71295	909.411348	0.34738	0.0001583	-0.41377	-0.00018856	-0.066397	-3.0258E-05	455.7126449235443	36.905	0.67324	36.905	36.691	37.364	0					57	25	3	0	0	0	0.0046499	2	6347	6347;6391		85.272	34.417	1	118130			20284	2762	13386	13525	27575;27576	27575		178			-0.04698150724777861
TADVTSAVM	9	Oxidation (M)	_TADVTSAVM(Oxidation (M))_		TADVTSAVM(1)		TADVTSAVM(61)	0	0	1		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.7128601074219	2	455.71295	909.411348	0.1529	6.9679E-05	-0.12149	-5.5364E-05	0.031412	1.4315E-05	455.7127662864611	36.775	0.54811	36.857	36.662	37.211	0.081711					50	21	3	0	0	0	0.015682	2	6179	6179;6222		61.357	19.263	1	97267			20285	2762	13386	13525	27577;27578	27577		178			-0.04698150724777861
TAEAFQIVL	9	Unmodified	_TAEAFQIVL_					0	0	0		ENST00000569969.5_2_16:28993554-28995617:+|nuORF;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1	ENST00000569969.5_2_16:28993554-28995617:+|nuORF	ENST00000569969.5_2_16:28993554-28995617:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.276611328125	2	496.276575	990.538597	0.9209	0.00045702	-0.36753	-0.0001824	0.55336	0.00027462	496.27625958119535	80.145	0.64618	80.145	79.897	80.543	0					46	21	3	0	0	0	0.091044	1	19479	19479		34.402	2.0962	1	491390			20286	4349	13387	13526	27579	27579					0.04294938211717181
TAEAFQIVL	9	Unmodified	_TAEAFQIVL_					0	0	0		ENST00000569969.5_2_16:28993554-28995617:+|nuORF;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1	ENST00000569969.5_2_16:28993554-28995617:+|nuORF	ENST00000569969.5_2_16:28993554-28995617:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.27667236328125	2	496.276575	990.538597	0.63691	0.00031609	-0.15858	-7.8702E-05	0.47833	0.00023738	496.2763375527951	80.036	0.57973	80.062	79.884	80.464	0.026436					48	20	3	0	0	0	0.03918	1	19354	19354		45.7	7.7256	1	258910			20287	4349	13387	13526	27580	27580					0.04294938211717181
TAEALQPTL	9	Unmodified	_TAEALQPTL_					0	0	0		nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP;ENST00000466847.5_1_16:88068919-88110264:+|nuORF;ENST00000481948.1_1_16:88104968-88110264:+|nuORF;nc|ENSG00000172530|Q8N9N5-3|BANP;nc|ENSG00000172530|Q8N9N5-5|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2586669921875	2	472.258382	942.502212	0.31122	0.00014697	0.13104	6.1883E-05	0.44225	0.00020886	472.25846545647875	55.207	0.48486	55.207	55.04	55.525	0					42	17	3	0	0	0	0.0068798	1	11895	11895		76.825	6.4928	1	326040			20288	4500	13388	13527	27581	27581					0.028660613149895653
TAEALQPTL	9	Unmodified	_TAEALQPTL_					0	0	0		nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP;ENST00000466847.5_1_16:88068919-88110264:+|nuORF;ENST00000481948.1_1_16:88104968-88110264:+|nuORF;nc|ENSG00000172530|Q8N9N5-3|BANP;nc|ENSG00000172530|Q8N9N5-5|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2584228515625	2	472.258382	942.502212	0.22593	0.0001067	0.04377	2.0671E-05	0.2697	0.00012737	472.2584211651444	55.163	0.4494	55.228	55.068	55.517	0.065128					37	16	3	0	0	0	0.017478	1	11748	11748		60.074	3.8969	1	237620			20289	4500	13388	13527	27582	27582					0.028660613149895653
TAEDQTDAAA	10	Unmodified	_TAEDQTDAAA_					0	0	0			REV__ENSG00000107874|ENST00000369937|CUEDC2	REV__ENSG00000107874|ENST00000369937|CUEDC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7119140625	2	496.711993	991.409433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.018	1	25.018	24.518	25.518	0								0	0	0	0.34018	1	2855	2855		0	0	1		+		20290	8603	13389	13528	27583	27583					-0.08661488209054369
TAEELQATL	9	Unmodified	_TAEELQATL_					0	0	0		nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1;SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant;nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2530517578125	2	488.253297	974.492041	0.46453	0.00022681	-0.82632	-0.00040345	-0.36179	-0.00017665	488.25280078787415	54.551	0.26288	54.616	54.563	54.826	0.065128					19	13	2	0	0	0	0.22083	1	11603	11603		16.149	2.2431	1	81644			20291	2396	13390	13529	27584	27584					0.0037745358977190335
TAEELQATL	9	Unmodified	_TAEELQATL_					0	0	0		nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1;SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant;nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	488.253297	974.492041	0.46073	0.00022495	-0.70062	-0.00034208	-0.23989	-0.00011713	488.25304705834395	54.646	0.27074	54.646	54.6	54.871	0	0.014758	7.4047E-05	NaN	16.149	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102850			20292	2396	13390	13529							0.0037745358977190335
TAEGHPKSL	9	Unmodified	_TAEGHPKSL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2480773925781	2	470.248349	938.482145	-0.52036	-0.0002447	-0.21451	-0.00010088	-0.73487	-0.00034557	470.2481725015401	17.638	0.6387	17.638	17.492	18.13	0					178	77	4	0	0	0	0.0046695	2	973	946;973		84.522	50.12	1	248240			20293	5174	13391	13530	27585;27586	27586					0.010443103750390037
TAEGHPKSL	9	Unmodified	_TAEGHPKSL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.24786376953125	2	470.248349	938.482145	-0.065348	-3.073E-05	-0.54347	-0.00025556	-0.60881	-0.00028629	470.24800893333827	17.554	0.53473	17.638	17.51	18.045	0.083696					158	67	4	0	0	0	0.00648	1	867	867		78.06	50.432	1	256980			20294	5174	13391	13530	27587	27587					0.010443103750390037
TAEGTEENL	9	Unmodified	_TAEGTEENL_					0	0	0		nc|ENSG00000172409|Q92989-2|CLP1;ENSG00000172409|ENST00000533682|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2168884277344	2	482.216911	962.41927	-0.049045	-2.365E-05	-1.0382	-0.00050065	-1.0873	-0.0005243	482.2164023227397	16.742	0.18724	16.82	16.735	16.922	0.077806					39	23	2	0	0	0	0.32375	1	717	717		3.5965	0	1	28180			20295	4494	13392	13531	27588	27588					-0.06344300203659259
TAEGTEENL	9	Unmodified	_TAEGTEENL_					0	0	0		nc|ENSG00000172409|Q92989-2|CLP1;ENSG00000172409|ENST00000533682|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	482.216911	962.41927	-0.65183	-0.00031432	-0.3632	-0.00017514	-1.015	-0.00048946	482.21672839903096	16.744	0.22788	16.744	16.665	16.893	0	-0.037908	0.00045681	NaN	3.5965	40	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31389			20296	4494	13392	13531							-0.06344300203659259
TAELDPHIL	9	Unmodified	_TAELDPHIL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7721252441406	2	504.771657	1007.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.949	1	55.949	55.449	56.449	0								0	0	0	0.065902	1	12126	12126		43.858	19.838	1				20297	2820	13393	13532	27589	27589					0.025297502063381216
TAELDPHIL	9	Unmodified	_TAELDPHIL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.77215576171875	2	504.771657	1007.52876	0.21906	0.00011057	2.2023	0.0011117	2.4214	0.0012222	504.77243049051543	55.977	0.50762	56.043	55.675	56.183	0.065891					34	18	2	0	0	0	0.037705	1	11983	11983		46.021	15.384	1	162490			20298	2820	13393	13532	27590	27590					0.025297502063381216
TAFPGTDKL	9	Unmodified	_TAFPGTDKL_					0	0	0		nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.25286865234375	2	475.2531	948.491647	-0.06002	-2.8525E-05	0.07761	3.6884E-05	0.01759	8.3598E-06	475.253083836822	46.657	0.61457	46.657	46.472	47.087	0					60	34	2	0	0	0	0.056368	3	9314	9280;9314;9363		41.956	19.219	1	730740			20299	4097	13394	13533	27591;27592;27593	27592					0.01534078660574778
TAFPGTDKL	9	Unmodified	_TAFPGTDKL_					0	0	0		nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.253173828125	2	475.2531	948.491647	-0.098059	-4.6603E-05	0.27868	0.00013244	0.18062	8.5841E-05	475.25310848275035	46.534	0.53513	46.617	46.524	47.06	0.083096					56	32	2	0	0	0	0.11198	3	9130	9130;9166;9206		29.841	12.728	1	404680			20300	4097	13394	13533	27594;27595;27596	27594					0.01534078660574778
TAFVEPFVIL	10	Unmodified	_TAFVEPFVIL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.323974609375	2	568.323525	1134.6325	0.53265	0.00030272	-0.47235	-0.00026845	0.060297	3.4268E-05	568.323191910383	97.55	0.51072	97.591	97.337	97.848	0.040855					41	26	2	0	0	0	0.38104	1	24659	24659		13.906	2.2658	1	67544			20301	4583	13395	13534	27597	27597					0.07056657314001313
TAGIIGVNR	9	Unmodified	_TAGIIGVNR_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|18|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|14|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.7664794921875	2	450.766709	899.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.803	1	36.803	36.303	37.303	0								0	0	0	0.22786	1	6329	6329		13.906	3.8321	1				20302	200;3052	13396	13535	27598	27598					0.06508606991610577
TAGIIGVNR	9	Unmodified	_TAGIIGVNR_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|18|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|14|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.76605224609375	2	450.766709	899.518865	0.13726	6.1874E-05	-0.53157	-0.00023962	-0.39431	-0.00017774	450.76632980114283	36.703	0.37922	36.785	36.634	37.014	0.081715					25	15	2	0	0	0	0.23216	1	6172	6172		14.838	4.0143	1	40751			20303	200;3052	13396	13535	27599	27599					0.06508606991610577
TAGRHGDDL	9	Unmodified	_TAGRHGDDL_					0	0	0		ENSG00000170454|ENST00000252245|KRT75;CON__O95678;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__Q8BGZ7;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__P50446;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794	ENSG00000170454|ENST00000252245|KRT75;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;ENSG00000189182|ENST00000341809|KRT77	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.22509765625	2	471.225405	940.436257	-0.57031	-0.00026875	-0.19222	-9.058E-05	-0.76253	-0.00035932	471.22535980524066	16.746	1.7032	16.746	16.584	18.288	0					442	210	4	0	0	0	0.0039507	4	795	770;795;819;842		103.82	33.492	1	1516600		+	20304	215;219;211;238	13397	13536	27600;27601;27602;27603	27601					-0.03634334807202322
TAGRHGDDL	9	Unmodified	_TAGRHGDDL_					0	0	0		ENSG00000170454|ENST00000252245|KRT75;CON__O95678;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__Q8BGZ7;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__P50446;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794	ENSG00000170454|ENST00000252245|KRT75;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;ENSG00000189182|ENST00000341809|KRT77	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.22528076171875	2	471.225405	940.436257	-0.052467	-2.4724E-05	-0.43849	-0.00020663	-0.49096	-0.00023135	471.22525551601245	16.749	1.1036	16.827	16.665	17.769	0.077806					323	138	5	0	0	0	0.00046066	3	727	703;727;748		132.38	46.048	1	1479800		+	20305	215;219;211;238	13397	13536	27604;27605;27606	27605					-0.03634334807202322
TAHFEQNTL	9	Unmodified	_TAHFEQNTL_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.756591796875	2	530.756538	1059.49852	0.1623	8.6141E-05	1.0289	0.00054607	1.1911	0.00063221	530.7565081039003	35.774	0.91847	35.774	35.51	36.429	0					105	35	5	0	0	0	0.015341	2	6022	6022;6072		61.602	29.296	1	347370			20306	3541	13398	13537	27607;27608	27607					-0.028846084588622034
TAHFEQNTL	9	Unmodified	_TAHFEQNTL_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7564086914062	2	530.756538	1059.49852	0.25055	0.00013298	1.0766	0.00057142	1.3272	0.0007044	530.7564449396167	35.68	0.64313	35.759	35.513	36.156	0.078831					93	23	6	0	0	0	0.10543	3	5893	5839;5893;5937		31.268	10.854	1	317810			20307	3541	13398	13537	27609;27610;27611	27610					-0.028846084588622034
TAHIEREE	8	Unmodified	_TAHIEREE_					0	0	0			REV__ENSG00000107960|ENST00000224950|STN1	REV__ENSG00000107960|ENST00000224950|STN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.740966796875	2	492.740888	983.467223	-0.062301	-3.0698E-05	-0.19788	-9.7502E-05	-0.26018	-0.0001282	492.74092416120504	26.779	1.8368	26.866	26.491	28.328	0.0867					294	129	5	0	0	0	0.53026	1	3176	3176		7.9102	7.9102	1	1744700	+		20308	8607	13399	13538	27612	27612					-0.025171814929422
TAHWRVPL	8	Unmodified	_TAHWRVPL_					0	0	0		ENSG00000169418|ENST00000368680|NPR1	ENSG00000169418|ENST00000368680|NPR1	ENSG00000169418|ENST00000368680|NPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2767028808594	2	490.277244	978.539935	0.6114	0.00029976	-1.9739	-0.00096774	-1.3625	-0.00066798	490.27621127912306	66.668	0.58145	66.734	66.602	67.184	0.065063					27	21	2	0	0	0	0.50159	1	15290	15290		12.532	0.89125	1	151230			20309	4338	13400	13539	27613	27613					0.049806170911210756
TAIEAQHLL	9	Unmodified	_TAIEAQHLL_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.27972412109375	2	498.279649	994.544745	0.25941	0.00012926	0.20181	0.00010056	0.46122	0.00022981	498.27962661163605	49.139	0.64988	49.139	48.858	49.508	0					52	22	4	0	0	0	0.055289	1	10044	10044		61.602	34.718	1	260410			20310	1430	13401	13540	27614	27614					0.04725456443236453
TAIGDPPNVI	10	Unmodified	_TAIGDPPNVI_					0	0	0		nc|ENSG00000104044|Q04671-3|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;ENSG00000104044|ENST00000354638|OCA2	nc|ENSG00000104044|Q04671-3|OCA2	nc|ENSG00000104044|Q04671-3|OCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7717590332031	2	498.771657	995.528761	0.17911	8.9334E-05	0.1075	5.3616E-05	0.2866	0.00014295	498.7716773799375	48.74	0.77061	48.816	48.567	49.338	0.076607					81	26	5	0	0	0	0.29844	1	9864	9864		22.736	4.5899	1	1064200			20311	1393	13402	13541	27615	27615					0.030817502063200664
TAILYEKQL	9	Unmodified	_TAILYEKQL_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2636108398438	2	539.810782	1077.60701	0.31725	0.00017125	0.86148	0.00046504	1.1787	0.00063629	539.8108534598133	48.241	0.29424	48.241	48.045	48.339	0					14	9	2	0	0	0	0.22715	1	9752	9752		20.581	4.4318	1	89703			20312	85	13403	13542	27616	27616					0.0713118279156788
TAIRENLISAL	11	Unmodified	_TAIRENLISAL_					0	0	0		nc|ENSG00000159131|P22102-2|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENSG00000159131|ENST00000381815|GART	nc|ENSG00000159131|P22102-2|GART	nc|ENSG00000159131|P22102-2|GART	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2604370117188	2	600.85097	1199.68739	0.42919	0.00025788	-0.15533	-9.3332E-05	0.27385	0.00016455	600.850830082261	61.277	0.27846	61.277	61.11	61.389	0					14	9	2	0	0	0	0.31022	1	13754	13754		8.9762	0	1	77052			20313	3714	13404	13543	27617	27617					0.0955304411461384
TAISENYQTM	10	Oxidation (M)	_TAISENYQTM(Oxidation (M))_		TAISENYQTM(1)		TAISENYQTM(51)	0	0	1		ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7469482421875	2	587.258253	1172.50195	0.51298	0.00030125	-0.54951	-0.0003227	-0.036522	-2.1448E-05	587.2579682023519	38.427	0.56342	38.427	38.239	38.802	0					41	19	3	0	0	0	0.072378	2	6813	6798;6813		51.488	33.593	1	85628			20314	1957	13405	13544	27618;27619	27619		118			-0.07739726467184482
TAISENYQTM	10	Oxidation (M)	_TAISENYQTM(Oxidation (M))_		TAISENYQTM(1)		TAISENYQTM(50)	0	0	1		ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.2583618164062	2	587.258253	1172.50195	0.67893	0.0003987	-0.59994	-0.00035232	0.078983	4.6384E-05	587.2578929573766	38.344	0.50845	38.431	38.236	38.744	0.08688					34	17	3	0	0	0	0.078728	2	6657	6657;6662		49.742	36.699	1	86884			20315	1957	13405	13544	27620;27621	27620		118			-0.07739726467184482
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.78466796875	2	528.784233	1055.55391	0.21855	0.00011556	0.03591	1.8989E-05	0.25446	0.00013455	528.7847076633929	90.063	1.4437	90.063	89.739	91.183	0					242	55	6	0	0	0	4.8934E-13	9	22651	22478;22522;22563;22607;22651;22691;22732;22778;22826		188.58	106.96	1	252650000			20316	4222	13406	13545	27622;27623;27624;27625;27626;27627;27628;27629;27630	27626					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7855834960938	2	528.784233	1055.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.979	1	93.979	93.479	94.479	0								0	0	0	0.116	1	23713	23713		30.637	19.813	1				20317	4222	13406	13545	27631	27631					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7740478515625	2	528.784233	1055.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.045	1	97.045	96.545	97.545	0								0	0	0	0.26267	1	24649	24649		6.7232	3.1267	1				20318	4222	13406	13545	27632	27632					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7843017578125	2	528.784233	1055.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.007	1	99.007	98.507	99.507	0								0	0	0	0.22786	1	25244	25244		13.906	6.6168	1				20319	4222	13406	13545	27633	27633					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7844848632812	2	528.784233	1055.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.208	1	99.208	98.708	99.708	0								0	0	0	0.16041	1	25304	25304		24.021	10.978	1				20320	4222	13406	13545	27634	27634					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.775146484375	2	528.784233	1055.55391	0.4105	0.00021706	0.42018	0.00022219	0.83068	0.00043925	528.7843254697135	91.387	0.43872	91.387	91.269	91.707	0					28	16	3	0	0	0	0.0002706	1	22910	22910		111.29	49.93	1	963340			20321	4222	13406	13545	27635	27635					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7842407226562	2	528.784233	1055.55391	0.51229	0.00027089	0.43607	0.00023058	0.94835	0.00050147	528.7842529251388	91.751	2.0659	91.751	91.507	93.573	0					166	79	3	0	0	0	0.00038329	1	23014	23014		107.19	54.919	1	655530			20322	4222	13406	13545	27636	27636					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7845458984375	2	528.784233	1055.55391	0.079132	4.1844E-05	0.16641	8.7997E-05	0.24555	0.00012984	528.7846507195243	90.006	1.5632	90.04	89.604	91.168	0.034065					250	62	6	0	0	0	4.8934E-13	11	22560	22312;22360;22406;22434;22480;22485;22523;22560;22610;22653;22658		188.58	106.96	1	187870000			20323	4222	13406	13545	27637;27638;27639;27640;27641;27642;27643;27644;27645;27646;27647	27644					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7838745117188	2	528.784233	1055.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.42	1	105.45	104.95	105.95	0.029739								0	0	0	0.22786	1	26977	26977		13.906	9.009	1				20324	4222	13406	13545	27648	27648					0.0283580500890821
TAKDSDPEL	9	Unmodified	_TAKDSDPEL_					0	0	0		nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2348327636719	2	488.235104	974.455655	-0.30429	-0.00014857	-0.16713	-8.1598E-05	-0.47142	-0.00023017	488.2348743210132	26.407	0.47015	26.407	26.254	26.724	0					76	35	3	0	0	0	0.31086	1	3244	3244		5.2969	0.96765	1	62141			20325	3006	13407	13546	27649	27649					-0.03259423306951703
TAKDSDPEL	9	Unmodified	_TAKDSDPEL_					0	0	0		nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2350769042969	2	488.235104	974.455655	-0.21992	-0.00010737	-0.14123	-6.8954E-05	-0.36115	-0.00017633	488.2348974042598	26.268	0.38841	26.36	26.222	26.61	0.091507					59	31	2	0	0	0	0.31086	1	3096	3096		5.2969	0.96765	1	63259			20326	3006	13407	13546	27650	27650					-0.03259423306951703
TAKKDINEVL	10	Unmodified	_TAKKDINEVL_					0	0	0			REV__nc|ENSG00000103449|Q9NSC2-2|SALL1	REV__nc|ENSG00000103449|Q9NSC2-2|SALL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8241577148438	2	565.824421	1129.63429	0.1394	7.8875E-05	-0.1694	-9.5849E-05	-0.029999	-1.6974E-05	565.8243681845014	17.919	0.17666	18.003	17.899	18.076	0.083694					36	21	2	0	0	0	0.46899	1	934	934		1.1933	0	1	22818	+		20327	8478	13408	13547	27651	27651					0.07465666331927423
TAKKVKKAVK	10	Unmodified	_TAKKVKKAVK_					0	0	0		tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8779907226562	2	550.879333	1099.74411	0.41077	0.00022628	-0.084478	-4.6537E-05	0.32629	0.00017975	550.8791180810038	111.95	0.63422	111.97	111.81	112.45	0.014595					187	76	3	0	0	0	0.47318	1	28503	28503		0.40072	0	1	4140300			20328	13675	13409	13548	27652	27652					0.19823136461786817
TAKLDYSKV	9	Unmodified	_TAKLDYSKV_					0	0	0		ENST00000564201.1_1_12:52449860-52450525:+|nuORF;ENST00000550339.1_1_12:52449819-52450525:+|nuORF	ENST00000564201.1_1_12:52449860-52450525:+|nuORF	ENST00000564201.1_1_12:52449860-52450525:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7742919921875	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.789	1	41.878	41.378	42.378	0.089764								0	0	0	0.26517	1	7705	7705		6.2058	0.97511	1				20329	7097	13410	13549	27653	27653					0.0492232324043016
TALEEGAPQA	10	Unmodified	_TALEEGAPQA_					0	0	0			REV__ENSG00000105146|ENST00000302804|AURKC	REV__ENSG00000105146|ENST00000302804|AURKC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7563781738281	2	493.743096	985.47164	0.20436	0.0001009	1.9145	0.00094526	2.1188	0.0010462	493.74289036849467	35.258	0.56656	35.258	34.912	35.479	0					35	19	3	0	0	0	0.44496	1	5838	5838		5.7319	0.50118	1	34732	+		20330	8529	13411	13550	27654	27654					-0.02167717070051367
TALFVEHVL	9	Unmodified	_TALFVEHVL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7929077148438	2	514.792392	1027.57023	0.57083	0.00029386	0.2928	0.00015073	0.86363	0.00044459	514.7924451752765	64.008	1.0177	64.008	63.733	64.75	0					84	35	3	0	0	0	0.003963	3	14552	14552;14601;14649		103.75	48.975	1	860530			20331	13348	13412	13551	27655;27656;27657	27655					0.057549309656678815
TALFVEHVL	9	Unmodified	_TALFVEHVL_					0	0	0		RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF	RNF213-CSNK1D|1|fusion	RNF213-CSNK1D|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7929077148438	2	514.792392	1027.57023	0.4728	0.00024339	0.42879	0.00022074	0.90159	0.00046413	514.7924354347342	63.898	1.0184	63.969	63.732	64.75	0.071014					78	35	3	0	0	0	0.003963	3	14386	14386;14437;14482		103.75	48.975	1	775030			20332	13348	13412	13551	27658;27659;27660	27658					0.057549309656678815
TALLIQTA	8	Unmodified	_TALLIQTA_					0	0	0			REV__nc|ENSG00000178852|Q8IY85-2|EFCAB13	REV__nc|ENSG00000178852|Q8IY85-2|EFCAB13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.1976318359375	2	415.752736	829.490919	-0.3906	-0.00016239	-0.24983	-0.00010387	-0.64043	-0.00026626	415.7524896032034	41.68	0.31236	41.68	41.487	41.8	0					16	11	2	0	0	0	0.3576	1	7772	7772		2.0598	0	1	43271	+		20333	10461	13413	13552	27661	27661					0.06935284011512977
TALNLFFKL	9	Unmodified	_TALNLFFKL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.818603515625	2	533.81841	1065.62227	0.87647	0.00046787	0.039995	2.135E-05	0.91646	0.00048922	533.8184022670893	80.181	0.9167	80.181	79.926	80.843	0					109	31	5	0	0	0	1.6618E-13	4	19539	19488;19539;19584;19626		193.29	130.72	1	9497900			20334	2175	13414	13553	27662;27663;27664;27665	27663					0.0920809437943717
TALNLFFKL	9	Unmodified	_TALNLFFKL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.8185424804688	2	533.81841	1065.62227	0.86231	0.00046032	-0.49199	-0.00026263	0.37032	0.00019768	533.818227368619	80.979	0.90282	80.979	80.843	81.746	0					66	30	3	0	0	0	0.0045224	2	19850	19850;19909		90.135	55.733	1	432680			20335	2175	13414	13553	27666;27667	27666					0.0920809437943717
TALNLFFKL	9	Unmodified	_TALNLFFKL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8193359375	2	533.81841	1065.62227	0.81478	0.00043495	0.094134	5.025E-05	0.90892	0.0004852	533.818439772689	80.21	2.2612	80.233	79.962	82.223	0.023605					163	80	5	0	0	0	1.6618E-13	6	19426	19335;19377;19426;19472;19718;19802		193.29	134.62	1	8419500			20336	2175	13414	13553	27668;27669;27670;27671;27672;27673	27670					0.0920809437943717
TALPRVMF	8	Unmodified	_TALPRVMF_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.76324462890625	2	467.762581	933.510608	0.66941	0.00031313	0.74712	0.00034947	1.4165	0.0006626	467.7629787133949	84.851	0.32837	84.851	84.804	85.132	0					15	11	2	0	0	0	0.53423	1	20953	20953		5.2307	0	1	197700	+		20337	10491	13415	13554	27674	27674					0.041193367506366485
TALVESEDL	9	Unmodified	_TALVESEDL_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7950439453125	2	488.745305	975.476056	0.39511	0.00019311	-1.3909	-0.00067979	-0.99578	-0.00048668	488.7445343829881	55.496	0.36577	55.496	55.269	55.635	0					20	12	2	0	0	0	0.2229	1	11969	11969		19.257	0	1	34617			20338	7497	13416	13555	27675	27675					-0.012662526471444835
TALWELHAL	9	Unmodified	_TALWELHAL_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2902221679688	2	527.290017	1052.56548	0.48542	0.00025596	0.20305	0.00010707	0.68848	0.00036303	527.2900886256965	69.137	0.84359	69.137	68.888	69.732	0					55	29	3	0	0	0	0.00038046	3	16125	16125;16169;16174		133.7	82.847	1	740660			20339	4528	13417	13556	27676;27677;27678	27676					0.04130046822888289
TALWELHAL	9	Unmodified	_TALWELHAL_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2899780273438	2	527.290017	1052.56548	0.15359	8.0987E-05	0.63132	0.00033289	0.78491	0.00041387	527.2904881474329	69.011	0.59896	69.074	68.821	69.42	0.062126					50	22	3	0	0	0	0.03472	1	16003	16003		47.749	26.877	1	782880			20340	4528	13417	13556	27679	27679					0.04130046822888289
TALWKHLK	8	Unmodified	_TALWKHLK_					0	0	0		ENSG00000177494|ENST00000317012|ZBED2	ENSG00000177494|ENST00000317012|ZBED2	ENSG00000177494|ENST00000317012|ZBED2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.27972412109375	2	498.803094	995.591636	0.24373	0.00012157	1.2248	0.00061092	1.4685	0.00073249	498.8035312702576	48.878	0.88004	48.878	48.514	49.394	0					50	30	2	0	0	0	0.3576	1	10044	10044		5.2307	0.47466	1	119660			20341	4704	13418	13557	27680	27680					0.09366360785020333
TAMDVVYAL	9	Unmodified	_TAMDVVYAL_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.74945068359375	2	491.749336	981.484119	0.38204	0.00018787	-0.029094	-1.4307E-05	0.35295	0.00017356	491.7492915361354	76.028	0.64546	76.028	75.878	76.523	0					63	38	2	0	0	0	0.0046476	3	18256	18217;18256;18315		85.357	31.781	1	1946100			20342	3689	13419	13558	27681;27682;27683	27682					-0.007363969313587404
TAMDVVYAL	9	Unmodified	_TAMDVVYAL_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7494201660156	2	491.749336	981.484119	0.35689	0.0001755	-0.032605	-1.6033E-05	0.32428	0.00015947	491.74926536111747	75.958	0.77863	75.997	75.86	76.639	0.039238					64	41	2	0	0	0	0.0053304	2	18054	18054;18096		81.613	28.038	1	1825900			20343	3689	13419	13558	27684;27685	27684					-0.007363969313587404
TAMDVVYAL	9	Oxidation (M)	_TAM(Oxidation (M))DVVYAL_		TAM(1)DVVYAL		TAM(51)DVVYAL	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7470703125	2	499.746793	997.479033	0.69442	0.00034703	-0.11374	-5.6839E-05	0.58068	0.00029019	499.7466516701604	66.717	2.9314	66.782	65.997	68.929	0.065063					229	108	4	0	0	0	0.030375	1	15224	15224		50.855	10.898	1	1437100			20344	3689	13419	13559	27686	27686		230			-0.019807007939675714
TAMELEFKL	9	Unmodified	_TAMELEFKL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7523803710938	2	541.283543	1080.55253	0.57016	0.00030862	-0.5386	-0.00029154	0.031561	1.7084E-05	541.2836470506015	68.233	0.37666	68.297	68.103	68.48	0.063507					19	13	2	0	0	0	0.2094	1	15713	15713		22.736	5.794	1	187640			20345	3127	13420	13560	27687	27687					0.015478476484986459
TANLEAQAL	9	Unmodified	_TANLEAQAL_					0	0	0		LGALS3BP-KRT14|1|fusion;ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	LGALS3BP-KRT14|1|fusion	LGALS3BP-KRT14|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7480773925781	2	465.748182	929.481811	0.19607	9.1317E-05	-0.24154	-0.0001125	-0.045475	-2.118E-05	465.747942311355	49.991	0.52937	49.991	49.764	50.294	0					30	18	2	0	0	0	0.034936	1	10314	10314		47.594	0	1	140070			20346	7416	13421	13561	27688	27688					0.014248906551870277
TANLEAQAL	9	Unmodified	_TANLEAQAL_					0	0	0		LGALS3BP-KRT14|1|fusion;ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	LGALS3BP-KRT14|1|fusion	LGALS3BP-KRT14|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.25006103515625	2	465.748182	929.481811	0.038434	1.7901E-05	0.31464	0.00014654	0.35307	0.00016444	465.74819430506426	49.9	0.47394	49.973	49.817	50.291	0.07312					26	16	2	0	0	0	0.12515	1	10153	10153		27.223	3.4335	1	103710			20347	7416	13421	13561	27689	27689					0.014248906551870277
TANNDHTVL	9	Unmodified	_TANNDHTVL_					0	0	0		nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	nc|ENSG00000132466|O75179-5|ANKRD17	nc|ENSG00000132466|O75179-5|ANKRD17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7408447265625	2	492.740888	983.467223	-0.10329	-5.0897E-05	-0.23906	-0.00011779	-0.34235	-0.00016869	492.7409271774941	26.905	0.96743	26.905	26.503	27.471	0					216	64	5	0	0	0	1.9628E-05	3	3386	3386;3422;3459		139.78	54.14	1	1943900			20348	2574	13422	13562	27690;27691;27692	27690					-0.025171814929535685
TANNDHTVL	9	Unmodified	_TANNDHTVL_					0	0	0		nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	nc|ENSG00000132466|O75179-5|ANKRD17	nc|ENSG00000132466|O75179-5|ANKRD17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.74090576171875	2	492.740888	983.467223	-0.062301	-3.0698E-05	-0.19788	-9.7502E-05	-0.26018	-0.0001282	492.74092416120504	26.779	1.8368	26.866	26.491	28.328	0.0867					294	129	5	0	0	0	0.0033402	3	3249	3210;3249;3289		107.56	49.841	1	1744700			20349	2574	13422	13562	27693;27694;27695	27694					-0.025171814929535685
TANQAPSQP	9	Unmodified	_TANQAPSQP_					0	0	0			REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.2219543457031	2	457.222331	912.430109	-0.15424	-7.052E-05	-0.34284	-0.00015675	-0.49707	-0.00022727	457.2221030926098	22.289	0.71926	22.289	22.086	22.805	0					112	59	3	0	0	0	0.2125	1	2118	2118		17.113	0	1	140450	+		20350	10600	13423	13563	27696	27696					-0.0296085303871223
TANQAPSQP	9	Unmodified	_TANQAPSQP_					0	0	0			REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.22216796875	2	457.222331	912.430109	-0.047482	-2.171E-05	-0.31733	-0.00014509	-0.36481	-0.0001668	457.22211439525006	22.129	0.51369	22.231	22.059	22.573	0.10178					97	43	3	0	0	0	0.2125	1	1922	1922		17.113	0	1	115980	+		20351	10600	13423	13563	27697	27697					-0.0296085303871223
TANQDGRVIL	10	Unmodified	_TANQDGRVIL_					0	0	0		ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000256263|A8MPP1|DDX11L8;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;ENST00000542661.1_1_12:31249848-31255462:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.798828125	2	543.798737	1085.58292	0.31788	0.00017286	-0.19332	-0.00010513	0.12455	6.7732E-05	543.7985245392007	38.484	0.92356	38.484	38.239	39.162	0					79	33	4	0	0	0	0.12534	3	6842	6799;6842;6884		42.312	16.913	1	298580			20352	7058	13424	13564	27698;27699;27700	27699					0.043553423578941874
TANQDGRVIL	10	Unmodified	_TANQDGRVIL_					0	0	0		ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000256263|A8MPP1|DDX11L8;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;ENST00000542661.1_1_12:31249848-31255462:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	ENST00000539757.1_1_12:9440801-9462940:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7987670898438	2	543.798737	1085.58292	0.40153	0.00021835	-0.40959	-0.00022273	-0.0080607	-4.3834E-06	543.7985290885024	38.406	0.78484	38.493	38.209	38.994	0.086884					74	28	4	0	0	0	0.19555	3	6698	6649;6698;6741		34.222	11.485	1	269950			20353	7058	13424	13564	27701;27702;27703	27702					0.043553423578941874
TANQHSDVI	9	Unmodified	_TANQHSDVI_					0	0	0		nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1	nc|ENSG00000128513|Q9NUX5-2|POT1	nc|ENSG00000128513|Q9NUX5-2|POT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7406311035156	2	492.740888	983.467223	-0.10329	-5.0897E-05	-0.23906	-0.00011779	-0.34235	-0.00016869	492.7409271774941	26.905	0.96743	26.905	26.503	27.471	0					216	64	5	0	0	0	0.17428	3	3349	3349;3498;3536		21.537	0	1	1943900			20354	2397	13425	13565	27704;27705;27706	27704					-0.025171814929535685
TANQHSDVI	9	Unmodified	_TANQHSDVI_					0	0	0		nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1	nc|ENSG00000128513|Q9NUX5-2|POT1	nc|ENSG00000128513|Q9NUX5-2|POT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.74072265625	2	492.740888	983.467223	-0.062301	-3.0698E-05	-0.19788	-9.7502E-05	-0.26018	-0.0001282	492.74092416120504	26.779	1.8368	26.866	26.491	28.328	0.0867					294	129	5	0	0	0	0.20358	1	3327	3327		18.146	0	1	1744700			20355	2397	13425	13565	27707	27707					-0.025171814929535685
TAQDRPPAE	9	Unmodified	_TAQDRPPAE_					0	0	0		nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7406921386719	2	492.740888	983.467223	-0.062301	-3.0698E-05	-0.19788	-9.7502E-05	-0.26018	-0.0001282	492.74092416120504	26.779	1.8368	26.866	26.491	28.328	0.0867					294	129	5	0	0	0	0.30005	1	3370	3370		6.7232	6.7232	1	1744700			20356	3577	13426	13566	27708	27708					-0.025171814929535685
TAQMGYSLEGN	11	Unmodified	_TAQMGYSLEGN_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.7596435546875	2	585.75842	1169.50229	0.73739	0.00043193	1.8396	0.0010776	2.577	0.0015095	585.7595056017632	104.05	0.36362	104.09	103.94	104.3	0.03791					51	35	2	0	0	0	0.40319	1	26585	26585		3.5871	0.30575	1	83892	+		20357	13219	13427	13567	27709	27709					-0.07568306747270981
TAQVSQLWE	9	Unmodified	_TAQVSQLWE_					0	0	0			REV__ENST00000494511.5_1_17:15134236-15168564:-|nuORF	REV__ENST00000494511.5_1_17:15134236-15168564:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2678833007812	2	531.266739	1060.51892	0.43892	0.00023318	1.5526	0.00082486	1.9916	0.001058	531.2675923783678	96.593	0.44908	96.593	96.423	96.872	0					51	19	4	0	0	0	0.21723	1	24514	24514		16.566	16.566	1	442300	+		20358	8632	13428	13568	27710	27710					-0.008914377990322464
TASADGTIKL	10	Unmodified	_TASADGTIKL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7691650390625	2	488.769114	975.523675	-0.31368	-0.00015332	0.11925	5.8284E-05	-0.19444	-9.5034E-05	488.76924827289946	40.347	0.53362	40.347	40.123	40.656	0					42	18	3	0	0	0	0.3186	2	7371	7371;7423		20.581	6.1756	1	128160			20359	4937	13429	13569	27711;27712	27711					0.034934463437252816
TASADGTIKL	10	Unmodified	_TASADGTIKL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.768798828125	2	488.769114	975.523675	-0.18325	-8.9568E-05	0.0024896	1.2169E-06	-0.18076	-8.8351E-05	488.76914770393455	40.212	0.45627	40.301	40.113	40.569	0.089645					39	17	3	0	0	0	0.29918	1	7217	7217		22.658	6.509	1	122540			20360	4937	13429	13569	27713	27713					0.034934463437252816
TASGVTVTSR	10	Unmodified	_TASGVTVTSR_					0	0	0		nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2	nc|ENSG00000166833|Q8IVL1-5|NAV2	nc|ENSG00000166833|Q8IVL1-5|NAV2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7641906738281	2	489.764363	977.514173	-0.30817	-0.00015093	-0.019989	-9.7901E-06	-0.32815	-0.00016072	489.7643055235701	23.554	0.34113	23.554	23.392	23.733	0					56	33	2	0	0	0	0.45133	1	2447	2447		4.5289	1.7937	1	28544			20361	4182	13430	13570	27714	27714					0.02451678058196194
TASGVTVTSR	10	Unmodified	_TASGVTVTSR_					0	0	0		nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2	nc|ENSG00000166833|Q8IVL1-5|NAV2	nc|ENSG00000166833|Q8IVL1-5|NAV2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	489.764363	977.514173	-0.071238	-3.489E-05	-0.15184	-7.4367E-05	-0.22308	-0.00010926	489.76419988337284	23.352	0.27897	23.454	23.331	23.61	0.10178	-0.050204	-6.5286E-05	NaN	4.5289	51	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25686			20362	4182	13430	13570							0.02451678058196194
TASIHTTAAS	10	Unmodified	_TASIHTTAAS_					0	0	0		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.242919921875	2	480.243264	958.471974	-0.50184	-0.00024101	-0.074618	-3.5835E-05	-0.57646	-0.00027684	480.2432365991569	23.561	0.35976	23.561	23.422	23.782	0					57	34	2	0	0	0	0.45794	1	2427	2427		3.2813	0	1	37532			20363	715	13431	13571	27715	27715					-0.008922973502080822
TASIVEQSL	9	Unmodified	_TASIVEQSL_					0	0	0		ENSG00000165169|ENST00000378578|DYNLT3	ENSG00000165169|ENST00000378578|DYNLT3	ENSG00000165169|ENST00000378578|DYNLT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2562255859375	2	474.25584	946.497126	0.35566	0.00016867	0.24921	0.00011819	0.60487	0.00028686	474.255934601811	54.499	0.68436	54.499	54.267	54.951	0					43	30	2	0	0	0	0.005983	3	11661	11661;11703;11748		79.596	23.419	1	295170			20364	4064	13432	13572	27716;27717;27718	27716					0.021737574523854164
TASIVEQSL	9	Unmodified	_TASIVEQSL_					0	0	0		ENSG00000165169|ENST00000378578|DYNLT3	ENSG00000165169|ENST00000378578|DYNLT3	ENSG00000165169|ENST00000378578|DYNLT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.25616455078125	2	474.25584	946.497126	0.30082	0.00014267	0.010629	5.0407E-06	0.31145	0.00014771	474.2558700407653	54.482	0.64236	54.547	54.285	54.927	0.065128					56	32	2	0	0	0	0.0046221	3	11556	11515;11556;11636		86.332	32.499	1	378310			20365	4064	13432	13572	27719;27720;27721	27720					0.021737574523854164
TASNVEEAF	9	Unmodified	_TASNVEEAF_					0	0	0		nc|ENSG00000104388|P61019-2|RAB2A;ENSG00000104388|ENST00000262646|RAB2A;ENST00000396696.1_1_8:61504408-61533325:+|nuORF;ENST00000530071.5_1_8:61496609-61533325:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF	nc|ENSG00000104388|P61019-2|RAB2A	nc|ENSG00000104388|P61019-2|RAB2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.2214050292969	2	484.221997	966.429441	-0.0059173	-2.8653E-06	-0.68417	-0.00033129	-0.69009	-0.00033416	484.22164650055106	48.188	0.40792	48.188	48.045	48.453	0					21	13	2	0	0	0	0.16392	1	9778	9778		22.736	3.2973	1	76907			20366	1410	13433	13573	27722	27722					-0.05511692478421537
TASNVEEAF	9	Unmodified	_TASNVEEAF_					0	0	0		nc|ENSG00000104388|P61019-2|RAB2A;ENSG00000104388|ENST00000262646|RAB2A;ENST00000396696.1_1_8:61504408-61533325:+|nuORF;ENST00000530071.5_1_8:61496609-61533325:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF	nc|ENSG00000104388|P61019-2|RAB2A	nc|ENSG00000104388|P61019-2|RAB2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2218322753906	2	484.221997	966.429441	0.16783	8.1269E-05	-0.5389	-0.00026095	-0.37106	-0.00017968	484.2216691192062	48.11	0.43788	48.19	48.004	48.442	0.080029					23	15	2	0	0	0	0.24021	1	9602	9602		13.906	2.7916	1	62160			20367	1410	13433	13573	27723	27723					-0.05511692478421537
TASPLEHIL	9	Unmodified	_TASPLEHIL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7744140625	2	490.7742	979.533846	0.18646	9.151E-05	0.3203	0.00015719	0.50676	0.0002487	490.77422320650703	58.192	0.50671	58.192	57.71	58.217	0					30	17	3	0	0	0	0.033885	3	12818	12770;12780;12818		48.346	21.462	1	362150			20368	1239	13434	13574	27724;27725;27726	27726					0.043260540689630034
TASPLEHIL	9	Unmodified	_TASPLEHIL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7743835449219	2	490.7742	979.533846	0.022603	1.1093E-05	0.35362	0.00017355	0.37623	0.00018464	490.77424855622615	58.375	0.47775	58.375	58.256	58.734	0					33	17	3	0	0	0	0.0045547	1	12864	12864		88.904	52.859	1	359030			20369	1239	13434	13574	27727	27727					0.043260540689630034
TASPLEHIL	9	Unmodified	_TASPLEHIL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7743225097656	2	490.7742	979.533846	0.18937	9.2938E-05	0.19906	9.7693E-05	0.38843	0.00019063	490.7742291728965	58.213	0.90707	58.283	57.871	58.778	0.070477					56	32	3	0	0	0	0.0087214	2	12691	12644;12691		71.134	38.828	1	286470			20370	1239	13434	13574	27728;27729	27729					0.043260540689630034
TASTNNFPH	9	Unmodified	_TASTNNFPH_					0	0	0			REV__tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	REV__tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.72796630859375	2	494.727781	987.441008	-0.010323	-5.1072E-06	0.56222	0.00027814	0.55189	0.00027304	494.7279160346193	28.265	0.83967	28.347	28.124	28.964	0.082132					93	51	3	0	0	0	0.2125	1	3669	3669		17.113	0	1	165240	+		20371	13164	13435	13575	27730	27730					-0.05321450664416716
TASVSGIHLA	10	Unmodified	_TASVSGIHLA_					0	0	0			REV__ENSG00000113205|ENST00000231130|PCDHB3;REV__ENSG00000081818|ENST00000194152|PCDHB4	REV__ENSG00000081818|ENST00000194152|PCDHB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.26409912109375	2	478.263999	954.513445	-0.031019	-1.4835E-05	-0.005684	-2.7184E-06	-0.036703	-1.7554E-05	478.26391198906333	36.756	1.4119	36.838	36.455	37.867	0.081715					129	53	4	0	0	0	0.41688	1	6287	6287		10.074	2.7847	1	764740	+		20372	8734;8241	13436	13576	27731	27731					0.034368834091424105
TASWPDWAL	9	Unmodified	_TASWPDWAL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7509155273438	2	523.750724	1045.4869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.375	1	84.375	83.875	84.875	0								0	0	0	0.010199	1	20793	20793		68.081	48.719	1				20373	3486	13437	13577	27732	27732					-0.03402805482187432
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant;ENSG00000004700|ENST00000444129|RECQL	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.2482604980469	2	464.248349	926.482145	-0.097905	-4.5452E-05	-0.10838	-5.0316E-05	-0.20629	-9.5768E-05	464.24824197204873	28.393	1.6222	28.393	28.056	29.678	0					222	87	4	0	0	0	0.00081324	4	3844	3803;3844;3889;3934		126.57	82.708	1	1522300			20374	336	13438	13578	27733;27734;27735;27736	27734					0.015963103750550545
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant;ENSG00000004700|ENST00000444129|RECQL	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.248291015625	2	464.248349	926.482145	-0.30245	-0.00014041	0.22408	0.00010403	-0.078369	-3.6383E-05	464.2483947888183	28.294	1.1916	28.376	27.998	29.189	0.082132					199	74	4	0	0	0	0.00061878	3	3687	3646;3687;3725		129.77	77.504	1	1478900			20375	336	13438	13578	27737;27738;27739	27738					0.015963103750550545
TATGLLGLRS	10	Unmodified	_TATGLLGLRS_					0	0	0			REV__ENST00000371975.8_1_1:46713825-46713966:+|nuORF	REV__ENST00000371975.8_1_1:46713825-46713966:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7926940917969	2	494.792924	987.571294	0.25796	0.00012764	0.079316	3.9245E-05	0.33728	0.00016688	494.7929872363041	35.465	0.58317	35.465	35.289	35.872	0					46	21	3	0	0	0	0.39662	1	5904	5904		12.241	0	1	81637	+		20376	11604	13439	13579	27740	27740					0.07701145334578996
TATKIEITM	9	Oxidation (M)	_TATKIEITM(Oxidation (M))_		TATKIEITM(1)		TATKIEITM(100)	0	0	1		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2733154296875	2	512.273175	1022.5318	0.16547	8.4768E-05	0.19735	0.00010109	0.36282	0.00018586	512.2731637334673	35.906	0.99059	35.906	35.645	36.636	0					101	38	4	0	0	0	0.0040167	3	6069	6024;6069;6119		103.42	59.561	1	619820			20377	1658	13440	13580	27741;27742;27743	27742		98			0.021432572688240725
TATKIEITM	9	Oxidation (M)	_TATKIEITM(Oxidation (M))_		TATKIEITM(1)		TATKIEITM(96)	0	0	1		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2731323242188	2	512.273175	1022.5318	0.19172	9.8215E-05	-0.06556	-3.3585E-05	0.12616	6.463E-05	512.2730132375258	38.773	1.7908	38.773	38.332	40.123	0					152	65	3	0	0	0	0.0043591	6	6943	6844;6899;6943;6989;7036;7085		96.367	52.508	1	285730			20378	1658	13440	13580	27744;27745;27746;27747;27748;27749	27746		98			0.021432572688240725
TATKIEITM	9	Oxidation (M)	_TATKIEITM(Oxidation (M))_		TATKIEITM(1)		TATKIEITM(100)	0	0	1		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2732543945312	2	512.273175	1022.5318	0.18852	9.6572E-05	0.10406	5.3306E-05	0.29258	0.00014988	512.2731353053817	35.814	1.1801	35.893	35.653	36.833	0.078831					109	46	4	0	0	0	0.0040167	2	5917	5876;5917		103.42	59.561	1	562310			20379	1658	13440	13580	27750;27751	27751		98			0.021432572688240725
TATKIEITM	9	Oxidation (M)	_TATKIEITM(Oxidation (M))_		TATKIEITM(1)		TATKIEITM(93)	0	0	1		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.273193359375	2	512.273175	1022.5318	0.27961	0.00014324	-0.070499	-3.6115E-05	0.20912	0.00010712	512.2730517843207	38.672	2.7537	38.758	37.987	40.741	0.08688					184	106	3	0	0	0	0.004443	5	6767	6724;6767;6809;6856;6899		93.166	50.205	1	234320			20380	1658	13440	13580	27752;27753;27754;27755;27756	27753		98			0.021432572688240725
TATLDNTLK	9	Unmodified	_TATLDNTLK_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7688903808594	2	488.769114	975.523675	-0.18325	-8.9568E-05	0.0024896	1.2169E-06	-0.18076	-8.8351E-05	488.76914770393455	40.212	0.45627	40.301	40.113	40.569	0.089645					39	17	3	0	0	0	0.24767	1	7269	7269		13.042	1.5478	1	122540			20381	5262	13441	13581	27757	27757					0.03493446343713913
TATLHEPIM	9	Oxidation (M)	_TATLHEPIM(Oxidation (M))_		TATLHEPIM(1)		TATLHEPIM(64)	0	0	1		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7576904296875	2	514.757692	1027.50083	0.24019	0.00012364	0.036425	1.875E-05	0.27662	0.00014239	514.7576544458054	36.34	0.86547	36.34	36.077	36.942	0					83	32	4	0	0	0	0.011655	2	6206	6164;6206		64.236	34.012	1	290980			20382	4068	13442	13582	27758;27759	27759		247			-0.011818960453865657
TATLHEPIM	9	Oxidation (M)	_TATLHEPIM(Oxidation (M))_		TATLHEPIM(1)		TATLHEPIM(48)	0	0	1		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7575073242188	2	514.757692	1027.50083	0.35986	0.00018524	-0.26923	-0.00013859	0.090631	4.6653E-05	514.7574015128542	37.9	1.8458	37.9	37.364	39.21	0					87	66	2	0	0	0	0.033885	1	6701	6701		48.346	23.672	1	156330			20383	4068	13442	13582	27760	27760		247			-0.011818960453865657
TATLHEPIM	9	Oxidation (M)	_TATLHEPIM(Oxidation (M))_		TATLHEPIM(1)		TATLHEPIM(64)	0	0	1		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7577514648438	2	514.757692	1027.50083	0.24668	0.00012698	0.0084527	4.3511E-06	0.25514	0.00013133	514.7576299104862	36.274	0.70109	36.356	36.112	36.813	0.081711					75	28	4	0	0	0	0.011655	2	6054	6013;6054		64.236	39.562	1	234670			20384	4068	13442	13582	27761;27762	27762		247			-0.011818960453865657
TATLHEPIM	9	Oxidation (M)	_TATLHEPIM(Oxidation (M))_		TATLHEPIM(1)		TATLHEPIM(55)	0	0	1		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.757568359375	2	514.757692	1027.50083	0.36307	0.00018689	-0.36237	-0.00018653	0.00070236	3.6154E-07	514.7573476685119	37.786	1.5694	37.871	37.445	39.015	0.084476					92	56	3	0	0	0	0.024893	2	6532	6470;6532		54.774	30.211	1	131550			20385	4068	13442	13582	27763;27764	27764		247			-0.011818960453865657
TATLHEPIM	9	Unmodified	_TATLHEPIM_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.75982666015625	2	506.760235	1011.50592	-0.019087	-9.6728E-06	-0.058029	-2.9407E-05	-0.077116	-3.9079E-05	506.76004021970544	44.824	0.39859	44.912	44.783	45.181	0.08754					24	14	3	0	0	0	0.25579	1	8611	8611		4.3292	0	1	80665			20386	4068	13442	13583	27765	27765					0.0006240781721089661
TATLHEPIM	9	Unmodified	_TATLHEPIM_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	506.760235	1011.50592	-0.27003	-0.00013684	-0.077932	-3.9493E-05	-0.34796	-0.00017633	506.7601560632842	44.904	0.64083	44.904	44.717	45.358	0	-0.0040146	-9.09E-06	NaN	7.9102	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61286			20387	4068	13442	13583							0.0006240781721089661
TAVAVFELL	9	Unmodified	_TAVAVFELL_					0	0	0		ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7815246582031	2	481.781493	961.548434	0.18697	9.0081E-05	-0.10731	-5.1698E-05	0.079668	3.8383E-05	481.78133406502747	91.659	1.0015	91.659	91.378	92.379	0					69	37	3	0	0	0	0.031665	2	23034	22981;23034		49.933	0	1	324850			20388	7007	13443	13584	27766;27767	27767					0.06612126217100922
TAVAVFELL	9	Unmodified	_TAVAVFELL_					0	0	0		ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7815246582031	2	481.781493	961.548434	0.030509	1.4699E-05	0.19299	9.2979E-05	0.2235	0.00010768	481.78143048958424	91.608	0.74328	91.643	91.384	92.127	0.035446					59	26	3	0	0	0	0.01063	2	22849	22803;22849		65.235	0	1	316610			20389	7007	13443	13584	27768;27769	27769					0.06612126217100922
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.76617431640625	2	440.766178	879.517802	0.4635	0.0002043	-0.19364	-8.5352E-05	0.26986	0.00011894	440.76596497349374	47.946	0.9325	47.946	47.612	48.544	0					70	31	3	0	0	0	0.012597	3	9690	9690;9735;9785		63.563	15.217	1	512480			20390	3892	13444	13585	27770;27771;27772	27770					0.07322392622711504
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.76617431640625	2	440.766178	879.517802	0.40671	0.00017927	-0.17122	-7.5468E-05	0.23549	0.0001038	440.76600216068647	47.807	0.80581	47.887	47.636	48.442	0.080032					76	29	4	0	0	0	0.026569	2	9527	9527;9584		53.576	13.618	1	390260			20391	3892	13444	13585	27773;27774	27773					0.07322392622711504
TAVGSGVVTL	10	Unmodified	_TAVGSGVVTL_					0	0	0		SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;ENSG00000168575|ENST00000520262|SLC20A2;ENSG00000144136|ENST00000272542|SLC20A1	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2613525390625	2	452.260925	902.507297	0.19227	8.6954E-05	-0.12211	-5.5224E-05	0.07016	3.173E-05	452.26079917783505	59.169	0.29787	59.169	59.062	59.36	0					18	10	2	0	0	0	0.071862	1	13118	13118		51.63	18.844	1	125250			20392	3199	13445	13586	27775	27775					0.052143651776077604
TAVGSGVVTL	10	Unmodified	_TAVGSGVVTL_					0	0	0		SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;ENSG00000168575|ENST00000520262|SLC20A2;ENSG00000144136|ENST00000272542|SLC20A1	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.2613525390625	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.096	1	59.167	58.667	59.667	0.070477								0	0	0	0.14662	1	12947	12947		38.176	10.547	1				20393	3199	13445	13586	27776	27776					0.052143651776077604
TAVHDAIL	8	Unmodified	_TAVHDAIL_					0	0	0		ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.2348937988281	2	420.23471	838.454868	0.14032	5.8969E-05	-0.07706	-3.2383E-05	0.063265	2.6586E-05	420.23472640336456	39.645	2.3318	39.645	39.347	41.679	0					184	84	5	0	0	0	0.023236	3	7196	7153;7196;7241		89.427	19.388	1	3337600			20394	4467	13446	13587	27777;27778;27779	27778					0.029178268346640834
TAVHDAIL	8	Unmodified	_TAVHDAIL_					0	0	0		ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.23480224609375	2	420.23471	838.454868	-0.082025	-3.447E-05	0.11877	4.9911E-05	0.036744	1.5441E-05	420.23477488906576	39.533	1.8751	39.622	39.364	41.239	0.088562					172	73	4	0	0	0	0.10563	1	7054	7054		53.576	13.127	1	2673400			20395	4467	13446	13587	27780	27780					0.029178268346640834
TAVITEFAL	9	Unmodified	_TAVITEFAL_					0	0	0		ENST00000301490.8_2_11:67395419-67395788:-|nuORF;ENSG00000167799|ENST00000376693|NUDT8	ENST00000301490.8_2_11:67395419-67395788:-|nuORF	ENST00000301490.8_2_11:67395419-67395788:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7713623046875	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.158	1	79.158	78.658	79.658	0								0	0	0	0.2428	1	19206	19206		10.824	3.5347	1				20396	4233	13447	13588	27781	27781					0.04447535837425676
TAVIWEPVL	9	Unmodified	_TAVIWEPVL_					0	0	0		ENST00000575714.5_1_16:4407825-4408182:-|nuORF;ENST00000574849.1_1_16:4407825-4408472:-|nuORF;ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7	ENST00000575714.5_1_16:4407825-4408182:-|nuORF	ENST00000575714.5_1_16:4407825-4408182:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2943115234375	2	514.294768	1026.57498	0.68953	0.00035462	-1.1388	-0.00058566	-0.44924	-0.00023104	514.294120729037	85.119	0.47787	85.119	84.929	85.407	0					26	16	3	0	0	0	0.11547	1	21015	21015		29.082	15.176	1	134540			20397	5721	13448	13589	27782	27782					0.0627581510843811
TAVIWEPVL	9	Unmodified	_TAVIWEPVL_					0	0	0		ENST00000575714.5_1_16:4407825-4408182:-|nuORF;ENST00000574849.1_1_16:4407825-4408472:-|nuORF;ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7	ENST00000575714.5_1_16:4407825-4408182:-|nuORF	ENST00000575714.5_1_16:4407825-4408182:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.29443359375	2	514.294768	1026.57498	0.68834	0.00035401	-1.3064	-0.00067189	-0.6181	-0.00031788	514.2938274567857	85.11	0.32944	85.134	84.983	85.312	0.023125					21	12	3	0	0	0	0.083124	1	20862	20862		36.127	16.87	1	102360			20398	5721	13448	13589	27783	27783					0.0627581510843811
TAVKELEAL	9	Unmodified	_TAVKELEAL_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-4|ACAD10;ENST00000507135.5_1_12:112130513-112159479:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.28173828125	2	487.281857	972.549162	0.015637	7.6196E-06	-3.13	-0.0015252	-3.1144	-0.0015176	487.2800367835441	48.843	1.1589	48.843	48.605	49.764	0					78	40	3	0	0	0	0.064247	1	9958	9958		40.239	12.61	1	236680			20399	1697	13449	13590	27784	27784					0.06178920866148019
TAVKNDYEM	9	Oxidation (M)	_TAVKNDYEM(Oxidation (M))_		TAVKNDYEM(1)		TAVKNDYEM(120)	0	0	1		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7421875	2	543.742239	1085.46993	-0.22281	-0.00012115	0.084505	4.5949E-05	-0.13831	-7.5202E-05	543.7422318173307	23.207	1.3467	23.207	22.96	24.307	0					352	127	5	0	0	0	0.00091105	4	2331	2331;2365;2400;2432		124.95	71.12	1	775350			20400	2570	13450	13591	27785;27786;27787;27788	27785		167			-0.06939094150334313
TAVKNDYEM	9	Oxidation (M)	_TAVKNDYEM(Oxidation (M))_		TAVKNDYEM(1)		TAVKNDYEM(100)	0	0	1		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7425537109375	2	543.742239	1085.46993	-0.18581	-0.00010103	0.20807	0.00011313	0.022262	1.2105E-05	543.7422858363984	24.765	2.6033	24.765	24.074	26.677	0					524	208	4	0	0	0	0.0039507	8	2790	2715;2753;2790;2828;2861;2865;2898;2932		103.82	63.964	1	403550			20401	2570	13450	13591	27789;27790;27791;27792;27793;27794;27795;27796	27791		167			-0.06939094150334313
TAVKNDYEM	9	Oxidation (M)	_TAVKNDYEM(Oxidation (M))_		TAVKNDYEM(1)		TAVKNDYEM(120)	0	0	1		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7421875	2	543.742239	1085.46993	0.06422	3.4919E-05	-0.11006	-5.9842E-05	-0.045836	-2.4923E-05	543.7421373386508	23.007	1.3471	23.108	22.882	24.229	0.10178					338	128	5	0	0	0	0.0011298	3	2166	2166;2198;2237		121.35	67.513	1	721100			20402	2570	13450	13591	27797;27798;27799	27797		167			-0.06939094150334313
TAVKNDYEM	9	Oxidation (M)	_TAVKNDYEM(Oxidation (M))_		TAVKNDYEM(1)		TAVKNDYEM(90)	0	0	1		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7423095703125	2	543.742239	1085.46993	0.011907	6.4745E-06	0.020489	1.1141E-05	0.032396	1.7615E-05	543.7422153876867	24.57	2.3189	24.666	24.069	26.388	0.096073					476	205	5	0	0	0	0.0045224	5	2587	2552;2587;2629;2666;2701		90.135	50.185	1	327880			20403	2570	13450	13591	27800;27801;27802;27803;27804	27801		167			-0.06939094150334313
TAVKNDYEM	9	Unmodified	_TAVKNDYEM_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7448120117188	2	535.744782	1069.47501	-0.041941	-2.247E-05	-0.25474	-0.00013648	-0.29668	-0.00015895	535.7447068062875	32.003	1.2565	32.003	31.753	33.01	0					103	54	2	0	0	0	0.0068798	1	4896	4896		76.825	47.743	1	497730			20404	2570	13450	13592	27805	27805					-0.056947902877027445
TAVKNDYEM	9	Unmodified	_TAVKNDYEM_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7448120117188	2	535.744782	1069.47501	0.18762	0.00010051	-0.60883	-0.00032618	-0.42122	-0.00022567	535.7445873095556	31.954	1.2049	32.028	31.657	32.862	0.073782					150	60	4	0	0	0	0.018465	1	4759	4759		59.368	36.632	1	454380			20405	2570	13450	13592	27806	27806					-0.056947902877027445
TAVLLTDIN	9	Unmodified	_TAVLLTDIN_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2737731933594	2	480.274032	958.533512	0.19542	9.3856E-05	-0.32324	-0.00015525	-0.12782	-6.139E-05	480.2737566564911	47.423	0.64675	47.506	47.199	47.846	0.083092					41	25	2	0	0	0	0.29576	1	9357	9357		7.2892	0	1	123130	+		20406	8965	13451	13593	27807	27807					0.05258634349104341
TAVQVVADVL	10	Unmodified	_TAVQVVADVL_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7956237792969	2	507.795132	1013.57571	0.38922	0.00019765	-0.20098	-0.00010206	0.18824	9.5587E-05	507.7948902838167	74.162	0.35643	74.211	74.156	74.513	0.048546					19	12	2	0	0	0	0.30917	1	17549	17549		21.59	2.2282	1	137100			20407	5406	13452	13594	27808	27808					0.06946609757483202
TAVTYEEI	8	Unmodified	_TAVTYEEI_					0	0	0			REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF	REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	463.2373046875	2	463.22929	924.444028	0.32957	0.00015267	-2.5533	-0.0011827	-2.2237	-0.0010301	463.2281679293015	90.33	0.35492	90.33	90.168	90.523	0					19	13	2	0	0	0	0.34292	1	22555	22555		24.674	5.2349	1	80835	+		20408	9486	13453	13595	27809	27809					-0.021216203302742542
TAVTYEEI	8	Unmodified	_TAVTYEEI_					0	0	0			REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF	REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	463.22929	924.444028	-0.14034	-6.5007E-05	-1.9799	-0.00091714	-2.1202	-0.00098215	463.22842015541374	90.293	0.38319	90.327	90.17	90.553	0.034065	-0.001426	0.00027002	NaN	23.148	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77450	+		20409	9486	13453	13595							-0.021216203302742542
TAYNLVHEL	9	Unmodified	_TAYNLVHEL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2612915039062	2	530.277106	1058.53966	0.35967	0.00019072	0.054645	2.8977E-05	0.41432	0.0002197	530.2771707980964	53.472	0.74969	53.472	53.293	54.042	0					70	28	4	0	0	0	0.0043442	4	11367	11325;11367;11419;11471		96.936	38.257	1	562000			20410	4298	13454	13596	27810;27811;27812;27813	27811					0.012731525806202626
TAYNLVHEL	9	Unmodified	_TAYNLVHEL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.26123046875	2	530.277106	1058.53966	0.48445	0.00025689	0.03845	2.0389E-05	0.5229	0.00027728	530.2770422932343	53.482	0.47107	53.547	53.367	53.838	0.06543					59	22	3	0	0	0	0.0044975	1	11220	11220		91.085	45.385	1	371970			20411	4298	13454	13596	27814	27814					0.012731525806202626
TAYRQEPIA	9	Unmodified	_TAYRQEPIA_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7759399414062	2	524.774731	1047.53491	-0.15011	-7.8775E-05	-0.20778	-0.00010904	-0.35789	-0.00018781	524.77458262866	30.567	0.42868	30.567	30.404	30.832	0					43	23	3	0	0	0	0.30757	3	4505	4441;4481;4505		5.7319	0.83484	1	50420			20412	3163	13455	13597	27815;27816;27817	27817					0.013042684378660852
TAYRQEPIA	9	Unmodified	_TAYRQEPIA_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.774658203125	2	524.774731	1047.53491	-0.19722	-0.0001035	0.066463	3.4878E-05	-0.13076	-6.8619E-05	524.7747856261608	30.532	0.36427	30.607	30.466	30.83	0.075403					45	23	3	0	0	0	0.30757	2	4320	4320;4358		5.7319	0.83484	1	37487			20413	3163	13455	13597	27818;27819	27818					0.013042684378660852
TAYVGSAVM	9	Oxidation (M)	_TAYVGSAVM(Oxidation (M))_		TAYVGSAVM(1)		TAYVGSAVM(82)	0	0	1		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.7179260253906	2	457.718036	913.421518	-0.019226	-8.7999E-06	0.075516	3.4565E-05	0.05629	2.5765E-05	457.7179567742782	40.072	0.75544	40.072	39.806	40.562	0					57	26	3	0	0	0	0.0052407	2	7321	7270;7321		81.89	33.544	1	244900			20414	1921	13456	13598	27820;27821	27821		113			-0.03865542999540139
TAYVGSAVM	9	Oxidation (M)	_TAYVGSAVM(Oxidation (M))_		TAYVGSAVM(1)		TAYVGSAVM(59)	0	0	1		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.71771240234375	2	457.718036	913.421518	-0.2828	-0.00012944	-0.24448	-0.0001119	-0.52728	-0.00024135	457.7179044991091	42.459	1.1748	42.459	42.03	43.205	0					69	40	2	0	0	0	0.01943	1	8096	8096		58.679	24.576	1	101380			20415	1921	13456	13598	27822	27822		113			-0.03865542999540139
TAYVGSAVM	9	Oxidation (M)	_TAYVGSAVM(Oxidation (M))_		TAYVGSAVM(1)		TAYVGSAVM(82)	0	0	1		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.71783447265625	2	457.718036	913.421518	-0.10116	-4.6304E-05	0.076144	3.4853E-05	-0.025019	-1.1452E-05	457.71797593837016	39.979	0.72891	40.068	39.788	40.517	0.088562					58	28	3	0	0	0	0.0052407	2	7179	7125;7179		81.89	41.933	1	197850			20416	1921	13456	13598	27823;27824	27824		113			-0.03865542999540139
TAYVGSAVM	9	Oxidation (M)	_TAYVGSAVM(Oxidation (M))_		TAYVGSAVM(1)		TAYVGSAVM(42)	0	0	1		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.7178955078125	2	457.718036	913.421518	-0.33471	-0.0001532	0.087725	4.0153E-05	-0.24699	-0.00011305	457.7180415013058	42.314	1.164	42.404	42.072	43.236	0.089764					69	44	2	0	0	0	0.0569	1	7900	7900		41.84	14.956	1	91605			20417	1921	13456	13598	27825	27825		113			-0.03865542999540139
TAYWKELSL	9	Unmodified	_TAYWKELSL_					0	0	0		ENST00000579880.5_1_17:8339285-8348278:+|nuORF;ENST00000580738.5_1_17:8339285-8349209:+|nuORF;nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	ENST00000579880.5_1_17:8339285-8348278:+|nuORF	ENST00000579880.5_1_17:8339285-8348278:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7948608398438	2	555.795132	1109.57571	0.66944	0.00037207	-0.54021	-0.00030025	0.12923	7.1824E-05	555.7946293323249	63.861	1.07	63.861	63.649	64.719	0					75	37	3	0	0	0	0.045808	1	14562	14562		67.081	37.24	1	726440			20418	4168	13457	13599	27826	27826					0.0253060975749122
TAYWKELSL	9	Unmodified	_TAYWKELSL_					0	0	0		ENST00000579880.5_1_17:8339285-8348278:+|nuORF;ENST00000580738.5_1_17:8339285-8349209:+|nuORF;nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	ENST00000579880.5_1_17:8339285-8348278:+|nuORF	ENST00000579880.5_1_17:8339285-8348278:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7952270507812	2	555.795132	1109.57571	0.68589	0.00038121	-0.51251	-0.00028485	0.17338	9.6365E-05	555.7946169490277	63.707	0.97142	63.778	63.617	64.589	0.071018					75	33	3	0	0	0	0.047066	2	14384	14384;14430		43.982	21.246	1	954670			20419	4168	13457	13599	27827;27828	27827					0.0253060975749122
TAYYNDPAF	9	Unmodified	_TAYYNDPAF_					0	0	0		ENSG00000187118|ENST00000466830|CMC1	ENSG00000187118|ENST00000466830|CMC1	ENSG00000187118|ENST00000466830|CMC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.793212890625	2	531.232364	1060.45018	0.44931	0.00023869	0.2183	0.00011597	0.66761	0.00035466	531.2323596700182	57.375	0.57964	57.375	57.16	57.74	0					50	20	4	0	0	0	0.08788	1	12563	12563		49.554	26.818	1	416740			20420	5109	13458	13600	27829	27829					-0.0776310209876101
TAYYNDPAF	9	Unmodified	_TAYYNDPAF_					0	0	0		ENSG00000187118|ENST00000466830|CMC1	ENSG00000187118|ENST00000466830|CMC1	ENSG00000187118|ENST00000466830|CMC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7933959960938	2	531.232364	1060.45018	0.49849	0.00026481	0.16299	8.6587E-05	0.66148	0.0003514	531.2323948975856	57.286	0.51896	57.355	57.15	57.669	0.068375					51	19	4	0	0	0	0.13858	1	12409	12409		38.176	18.737	1	361740			20421	5109	13458	13600	27830	27830					-0.0776310209876101
TCDLGTEAQF	10	Unmodified	_TCDLGTEAQF_					0	0	0		ENST00000486192.1_1_10:108380089-108389119:-|nuORF	ENST00000486192.1_1_10:108380089-108389119:-|nuORF	ENST00000486192.1_1_10:108380089-108389119:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7327880859375	2	542.734414	1083.45428	0.47402	0.00025727	-2.7543	-0.0014948	-2.2803	-0.0012376	542.7325759307727	57.011	0.27182	57.077	56.991	57.263	0.066635					16	9	3	0	0	0	0.35104	1	12339	12339		17.113	0	1	64413			20422	6784	13459	13601	27831	27831					-0.08411380667371304
TCGHERLR	8	Unmodified	_TCGHERLR_					0	0	0		ENST00000464990.1_1_3:33425426-33427097:+|nuORF;ENST00000422741.5_1_3:33414627-33427097:+|nuORF;ENST00000432809.5_1_3:33339416-33427097:+|nuORF;nc|ENSG00000153558|Q9UKC9-2|FBXL2;ENSG00000153558|ENST00000484457|FBXL2;ENST00000451636.5_1_3:33400471-33427097:+|nuORF	ENST00000464990.1_1_3:33425426-33427097:+|nuORF	ENST00000464990.1_1_3:33425426-33427097:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2615966796875	2	486.245618	970.476682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.956	1	33.956	33.456	34.456	0								0	0	0	0.38822	1	5472	5472		5.2307	0.90143	1				20423	3527	13460	13602	27832	27832					-0.009736916884207858
TCPLWLVE	8	Unmodified	_TCPLWLVE_					0	0	0			REV__ENST00000406316.6_3_2:51255552-51255684:-|nuORF	REV__ENST00000406316.6_3_2:51255552-51255684:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7479553222656	2	480.746596	959.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.005	1	64.005	63.505	64.505	0								0	0	0	0.38275	1	14581	14581		23.148	0	1		+		20424	11764	13461	13603	27833	27833					-0.002720757231713833
TCRVCVCVFY	10	Unmodified	_TCRVCVCVFY_					0	0	0		ENST00000609618.2_1_16:29831081-29831285:+|nuORF	ENST00000609618.2_1_16:29831081-29831285:+|nuORF	ENST00000609618.2_1_16:29831081-29831285:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7665405273438	2	596.769222	1191.52389	-0.010197	-6.0853E-06	-0.19246	-0.00011485	-0.20266	-0.00012094	596.7670829253807	105.29	0.36813	105.29	105.13	105.5	0					115	38	4	0	0	0	0.40987	1	27152	27152		10.824	0.024421	1	146730			20425	7324	13462	13604	27834	27834					-0.06420916523939013
TCRVRSGPSF	10	Unmodified	_TCRVRSGPSF_					0	0	0		ENSG00000102755|ENST00000282397|FLT1;nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1	ENSG00000102755|ENST00000282397|FLT1	ENSG00000102755|ENST00000282397|FLT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7952880859375	2	555.279657	1108.54476	0.4599	0.00025537	-0.047229	-2.6226E-05	0.41267	0.00022915	555.2794288563372	87.345	1.0866	87.372	87.021	88.108	0.027573					61	41	2	0	0	0	0.28982	1	21456	21456		26.268	5.8145	1	106760			20426	1325	13463	13605	27835	27835					-0.005168668283886291
TCSTYYIQDF	10	Unmodified	_TCSTYYIQDF_					0	0	0			REV__ENSG00000145794|ENST00000503335|MEGF10	REV__ENSG00000145794|ENST00000503335|MEGF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.7632446289062	2	620.763171	1239.51179	0.011282	7.0036E-06	-0.048226	-2.9937E-05	-0.036943	-2.2933E-05	620.7632435244748	60.852	1.0512	60.852	60.456	61.508	0					92	38	3	0	0	0	0.34138	1	13671	13671		18.146	0	1	517360	+		20427	9526	13464	13606	27836	27836					-0.09838538461781354
TCYLYDYPF	9	Unmodified	_TCYLYDYPF_					0	0	0		ENST00000261015.4_1_2:203776439-203776619:-|nuORF	ENST00000261015.4_1_2:203776439-203776619:-|nuORF	ENST00000261015.4_1_2:203776439-203776619:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.7523193359375	2	592.752075	1183.4896	0.32068	0.00019008	1.7241	0.001022	2.0448	0.0012121	592.7527283629786	77.264	1.0353	77.264	77.008	78.043	0					90	42	3	0	0	0	0.3182	1	18611	18611		4.3292	0.73274	1	1246200			20428	5862	13465	13607	27837	27837					-0.09480718139570854
TCYLYDYPF	9	Unmodified	_TCYLYDYPF_					0	0	0		ENST00000261015.4_1_2:203776439-203776619:-|nuORF	ENST00000261015.4_1_2:203776439-203776619:-|nuORF	ENST00000261015.4_1_2:203776439-203776619:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.7535400390625	2	592.752075	1183.4896	0.42378	0.0002512	1.4424	0.00085496	1.8661	0.0011062	592.7527069496992	77.225	0.89212	77.259	77.017	77.909	0.034485					83	36	3	0	0	0	0.3182	1	18447	18447		4.3292	0.13973	1	1822400			20429	5862	13465	13607	27838	27838					-0.09480718139570854
TDAAEDVLLG	10	Unmodified	_TDAAEDVLLG_					0	0	0		ENST00000510731.1_1_5:2788481-2788661:-|nuORF	ENST00000510731.1_1_5:2788481-2788661:-|nuORF	ENST00000510731.1_1_5:2788481-2788661:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2620544433594	2	502.250754	1002.48696	-0.17256	-8.6667E-05	0.59068	0.00029667	0.41812	0.00021	502.2510887044505	28.423	0.5367	28.423	28.246	28.783	0					49	27	3	0	0	0	0.3198	1	3878	3878		20.454	0	1	85544			20430	6915	13466	13608	27839	27839					-0.014188502728416097
TDEAFFAHNL	10	Unmodified	_TDEAFFAHNL_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7664794921875	2	582.769645	1163.52474	0.5384	0.00031376	-0.14022	-8.1713E-05	0.39818	0.00023205	582.7693433459294	53.436	1.3665	53.436	53.085	54.451	0					100	52	2	0	0	0	0.43214	1	11262	11262		8.1555	0.54658	1	215440	+		20431	10825	13467	13609	27840	27840					-0.05048339287372983
TDEFEDESF	9	Unmodified	_TDEFEDESF_					0	0	0			REV__ENST00000412750.2_1_12:121545070-121545268:+|nuORF	REV__ENST00000412750.2_1_12:121545070-121545268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7112426757812	2	559.711659	1117.40876	0.53954	0.00030199	-0.92765	-0.00051922	-0.38811	-0.00021723	559.7110050987676	91.721	0.58071	91.721	91.507	92.088	0					53	21	3	0	0	0	0.29105	1	23062	23062		7.9102	0	1	605520	+		20432	11784	13468	13610	27841	27841					-0.14524327648746294
TDEFEDESF	9	Unmodified	_TDEFEDESF_					0	0	0			REV__ENST00000412750.2_1_12:121545070-121545268:+|nuORF	REV__ENST00000412750.2_1_12:121545070-121545268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7113647460938	2	559.711659	1117.40876	0.45333	0.00025373	-0.64377	-0.00036033	-0.19044	-0.00010659	559.7111489790643	91.726	0.56854	91.763	91.559	92.128	0.036446					66	20	5	0	0	0	0.29105	2	22900	22850;22900		7.9102	0	1	686630	+		20433	11784	13468	13610	27842;27843	27843					-0.14524327648746294
TDEGYEHFYE	10	Unmodified	_TDEGYEHFYE_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.2522583007812	2	645.251482	1288.48841	0.49867	0.00032177	1.8454	0.0011907	2.344	0.0015125	645.2522531340821	83.512	0.55821	83.512	83.341	83.9	0					40	18	3	0	0	0	0.43972	1	20537	20537		6.7232	0.51738	1	266930			20434	872	13469	13611	27844	27844					-0.1442926097477084
TDENFVQH	8	Unmodified	_TDENFVQH_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2198486328125	2	495.219788	988.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.926	1	13.926	13.426	14.426	0								0	0	0	0.38822	1	290	290		0.69038	0	1		+		20435	9611	13470	13612	27845	27845					-0.06965156901321734
TDFYFNIA	8	Unmodified	_TDFYFNIA_					0	0	0		nc|ENSG00000112425|O95278-8|EPM2A;nc|ENSG00000112425|O95278-5|EPM2A;nc|ENSG00000112425|O95278-2|EPM2A;ENSG00000112425|ENST00000367519|EPM2A	nc|ENSG00000112425|O95278-8|EPM2A	nc|ENSG00000112425|O95278-8|EPM2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7718200683594	2	495.732	989.449448	0.41843	0.00020743	2.4663	0.0012226	2.8848	0.0014301	495.73298633931057	37.703	0.24037	37.787	37.598	37.838	0.084476					11	7	2	0	0	0	0.3576	1	6430	6430		2.0598	0	1	18788			20436	1760	13471	13613	27846	27846					-0.04569896747807434
TDGERITY	8	Unmodified	_TDGERITY_					0	0	0			REV__ENSG00000112139|ENST00000434837|MDGA1	REV__ENSG00000112139|ENST00000434837|MDGA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7298278808594	2	477.729989	953.445425	-0.19228	-9.186E-05	-0.47164	-0.00022532	-0.66393	-0.00031718	477.7297010929403	20.992	0.24763	21.092	20.965	21.213	0.099499					49	27	2	0	0	0	0.53118	1	1644	1644		7.2892	0	1	29944	+		20437	8706	13472	13614	27847	27847					-0.033159862415232055
TDINNLRP	8	Unmodified	_TDINNLRP_					0	0	0			REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1	REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7533264160156	2	471.753798	941.493044	-0.31659	-0.00014935	-0.10414	-4.9128E-05	-0.42073	-0.00019848	471.7537533586882	31.342	0.24753	31.342	31.2	31.447	0					17	11	2	0	0	0	0.50159	1	4697	4697		12.532	2.4576	1	18096	+		20438	13324	13473	13615	27848	27848					0.01995712749339873
TDISIITDL	9	Unmodified	_TDISIITDL_					0	0	0			REV__tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	REV__tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.77227783203125	2	495.771322	989.528092	0.43873	0.00021751	1.0899	0.00054034	1.5286	0.00075784	495.7716317986942	37.715	0.55431	37.715	37.547	38.101	0					24	18	2	0	0	0	0.26684	1	6618	6618		10.824	0	1	30400	+		20439	13240	13474	13616	27849	27849					0.03290910766611432
TDISIITDL	9	Unmodified	_TDISIITDL_					0	0	0			REV__tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	REV__tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7718200683594	2	495.771322	989.528092	0.40953	0.00020304	1.7532	0.00086918	2.1627	0.0010722	495.77185086133704	37.59	0.42807	37.674	37.505	37.933	0.084476					22	13	3	0	0	0	0.29576	1	6430	6430		7.2892	0	1	24530	+		20440	13240	13474	13616	27850	27850					0.03290910766611432
TDISIITDL	9	Unmodified	_TDISIITDL_					0	0	0			REV__tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	REV__tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.771322	989.528092	0.40953	0.00020304	1.7532	0.00086918	2.1627	0.0010722	495.77185086133704	37.59	0.42807	37.674	37.505	37.933	0.084476	-0.020058	0.00045947	NaN	10.824	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24530	+		20441	13240	13474	13616							0.03290910766611432
TDKLRPLSV	9	Unmodified	_TDKLRPLSV_					0	0	0			REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|13|3|sense	REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|13|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.80810546875	2	514.808574	1027.60259	0.02207	1.1362E-05	-0.33618	-0.00017307	-0.31411	-0.0001617	514.8081898787299	24.183	0.14644	24.283	24.191	24.338	0.099739					23	14	2	0	0	0	0.34754	1	2479	2479		0.45834	0	1	11878	+		20442	12697	13475	13617	27851	27851					0.08989718368638933
TDLFAFGFALL	11	Unmodified	_TDLFAFGFALL_					0	0	0			REV__ENST00000462363.6_1_1:198608398-198672548:+|nuORF	REV__ENST00000462363.6_1_1:198608398-198672548:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7507934570312	2	607.826432	1213.63831	0.50968	0.0003098	-2.261	-0.0013743	-1.7513	-0.0010645	607.8253667473457	60.219	0.12273	60.292	60.183	60.306	0.073421					6	4	2	0	0	0	0.3108	1	13272	13272		2.9952	2.5369	1	66847	+		20443	8235	13476	13618	27852	27852					0.04003755825669941
TDLKKTTVI	9	Unmodified	_TDLKKTTVI_					0	0	0		ENST00000388918.9_1_9:12709569-12709641:+|nuORF	ENST00000388918.9_1_9:12709569-12709641:+|nuORF	ENST00000388918.9_1_9:12709569-12709641:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8128967285156	2	509.810782	1017.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.81	1	101.81	101.31	102.31	0								0	0	0	0.27935	1	26096	26096		3.2813	0.28607	1				20444	6306	13477	13619	27853	27853					0.09891182791557185
TDLLWTAPFI	10	Unmodified	_TDLLWTAPFI_					0	0	0			REV__ENSG00000162769|ENST00000366971|FLVCR1	REV__ENSG00000162769|ENST00000366971|FLVCR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7652587890625	2	588.818607	1175.62266	0.62426	0.00036757	-0.25116	-0.00014789	0.3731	0.00021969	588.8185310334376	93.929	1.1855	93.967	93.656	94.841	0.038094					105	52	3	0	0	0	0.45627	1	23650	23650		3.5965	0	1	1181900	+		20445	9907	13478	13620	27854	27854					0.0418746930861289
TDLRRDLI	8	Unmodified	_TDLRRDLI_					0	0	0			REV__nc|ENSG00000101977|P10911-3|MCF2	REV__nc|ENSG00000101977|P10911-3|MCF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2906188964844	2	501.290548	1000.56654	0.62702	0.00031432	-0.19464	-9.7573E-05	0.43238	0.00021675	501.2903502694149	83.89	0.63176	83.89	83.55	84.182	0					55	21	3	0	0	0	0.53817	1	20705	20705		2.5775	0	1	306740	+		20446	8442	13479	13621	27855	27855					0.06628261191792717
TDLSRWEPRPT	11	Unmodified	_TDLSRWEPRPT_					0	0	0			REV__ENST00000606070.1_1_6:108279003-108279531:+|nuORF	REV__ENST00000606070.1_1_6:108279003-108279531:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.8802795410156	3	453.233481	1356.67861	-0.28376	-0.00012861	0.07956	3.6059E-05	-0.2042	-9.2549E-05	453.2335037980506	40.654	0.435	40.744	40.518	40.953	0.089645					23	16	2	0	0	0	0.31098	1	7397	7397		1.1098	0	1	28734	+		20447	12640	13480	13622	27856	27856					0.014540704781211389
TDMSTIPPS	9	Unmodified	_TDMSTIPPS_					0	0	0		nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.0634765625	2	474.720775	947.426998	-0.28816	-0.0001368	0.023533	1.1172E-05	-0.26463	-0.00012563	474.72073813094784	43.82	1.0271	43.909	43.453	44.48	0.088921					45	36	2	0	0	0	0.25051	1	8285	8285		7.9102	0	1	51538			20448	2931	13481	13623	27857	27857					-0.048818642077208096
TDMWSIGVL	9	Unmodified	_TDMWSIGVL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2550354003906	2	511.254785	1020.49502	0.16611	8.4922E-05	0.036203	1.8509E-05	0.20231	0.00010343	511.25474581647785	72.69	2.6272	72.746	71.921	74.548	0.055939					203	95	3	0	0	0	0.32112	1	17429	17429		3.9444	0	1	1111500			20449	4014	13482	13624	27858	27858					-0.014409945570605487
TDNQEDSAIMF	11	Unmodified	_TDNQEDSAIMF_					0	0	0		ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.768798828125	2	635.766442	1269.51833	0.11191	7.1149E-05	3.4961	0.0022227	3.608	0.0022938	636.2702904251887	87.177	0.32439	87.177	87.024	87.348	0					18	12	2	0	0	0	0.36864	1	21678	21678		10.151	0.76745	1	103110			20450	4305	13483	13625	27859	27859					-0.10564645301087694
TDPLPMARRL	10	Unmodified	_TDPLPMARRL_					0	0	0			REV__ENST00000515762.5_1_5:10442078-10461472:+|nuORF	REV__ENST00000515762.5_1_5:10442078-10461472:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.328369140625	2	585.326608	1168.63866	0.63806	0.00037348	0.19102	0.00011181	0.82908	0.00048528	585.327944788151	109.57	0.084488	109.59	109.54	109.63	0.019402					16	6	4	0	0	0	0.45794	1	28029	28029		3.2813	0	1	702530	+		20451	12254	13484	13626	27860	27860					0.06108852273882803
TDPTARPTI	9	Unmodified	_TDPTARPTI_					0	0	0		ENSG00000166851|ENST00000300093|PLK1;ENST00000562407.1_1_16:23695226-23699079:+|nuORF;ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2615966796875	2	486.261456	970.50836	-0.22088	-0.0001074	0.90682	0.00044095	0.68594	0.00033355	486.26183439187537	33.99	0.29504	33.99	33.828	34.123	0					26	10	3	0	0	0	0.25579	1	5472	5472		4.3292	0	1	45066			20452	4183	13485	13627	27861	27861					0.021925795465335796
TDPTARPTI	9	Unmodified	_TDPTARPTI_					0	0	0		ENSG00000166851|ENST00000300093|PLK1;ENST00000562407.1_1_16:23695226-23699079:+|nuORF;ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	486.261456	970.50836	-0.17306	-8.4153E-05	0.68892	0.000335	0.51586	0.00025084	486.26164758186366	33.93	0.35609	34.007	33.865	34.221	0.076244	0.0082358	-0.00014845	NaN	4.3292	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42135			20453	4183	13485	13627							0.021925795465335796
TDQAHKTE	8	Unmodified	_TDQAHKTE_					0	0	0		ENST00000555320.1_1_14:81288942-81289137:+|nuORF	ENST00000555320.1_1_14:81288942-81289137:+|nuORF	ENST00000555320.1_1_14:81288942-81289137:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.2327575683594	2	465.219788	928.425024	-0.27624	-0.00012851	-0.37888	-0.00017626	-0.65512	-0.00030477	465.219671585017	21.264	1.3151	21.264	21.078	22.393	0					352	128	6	0	0	0	0.51415	1	1887	1887		10.824	3.5347	1	1359200			20454	7123	13486	13628	27862	27862					-0.0420515690133243
TDRFAFQL	8	Unmodified	_TDRFAFQL_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.25872802734375	2	499.258717	996.50288	-0.014985	-7.4812E-06	0.38432	0.00019187	0.36933	0.00018439	499.25888934452865	58.488	0.42968	58.488	58.416	58.846	0					25	14	2	0	0	0	0.35759	1	12927	12927		13.906	0	1	204240			20455	576	13487	13629	27863	27863					0.004489007547249457
TDRFAFQL	8	Unmodified	_TDRFAFQL_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.25885009765625	2	499.258717	996.50288	0.24127	0.00012045	0.11995	5.9887E-05	0.36122	0.00018034	499.25877535068685	58.389	0.54299	58.459	58.348	58.891	0.070477					27	18	2	0	0	0	0.40691	1	12738	12738		25.399	0	1	199160			20456	576	13487	13629	27864	27864					0.004489007547249457
TDRFFCFQF	9	Unmodified	_TDRFFCFQF_					0	0	0			REV__nc|ENSG00000163534|Q96LA6-2|FCRL1	REV__nc|ENSG00000163534|Q96LA6-2|FCRL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.79248046875	2	605.771134	1209.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.24	1	70.24	69.74	70.74	0								0	0	0	0.17708	1	16479	16479		21.537	6.6987	1		+		20457	9943	13488	13630	27865	27865					-0.06866787434228172
TDRIPWVAP	9	Unmodified	_TDRIPWVAP_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2555541992188	2	527.787641	1053.56073	0.094865	5.0068E-05	-3.1465	-0.0016607	-3.0516	-0.0016106	527.7858084665509	35.28	0.25723	35.359	35.226	35.483	0.078827					17	10	2	0	0	0	0.25875	1	5762	5762		1.8442	0	1	20316			20458	1480	13489	13631	27866	27866					0.03609162680118061
TDSGVCCF	8	Unmodified	_TDSGVCCF_					0	0	0		ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENST00000465987.1_1_20:34053609-34055133:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2176513671875	2	416.154214	830.293875	0.19898	8.2808E-05	-0.83401	-0.00034708	-0.63503	-0.00026427	416.1541319179784	34.22	0.69176	34.22	33.984	34.676	0					57	26	3	0	0	0	0.3576	1	5537	5537		5.7604	0	1	162720			20459	6637	13490	13632	27867	27867					-0.1280600686524167
TDSKSYHH	8	Unmodified	_TDSKSYHH_					0	0	0			REV__ENSG00000059378|ENST00000263549|PARP12	REV__ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7201232910156	2	487.719956	973.425358	-0.1894	-9.2373E-05	0.14697	7.1679E-05	-0.042428	-2.0693E-05	487.71995913090717	24.681	0.59804	24.777	24.576	25.174	0.096075					85	52	2	0	0	0	0.50159	1	2632	2632		12.532	0	1	125170	+		20460	8076	13491	13633	27868	27868					-0.062417371814717626
TDSPDGSSGLG	11	Unmodified	_TDSPDGSSGLG_					0	0	0		ENSG00000132823|ENST00000255174|OSER1	ENSG00000132823|ENST00000255174|OSER1	ENSG00000132823|ENST00000255174|OSER1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7122497558594	2	496.711993	991.409433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.16	1	30.235	29.735	30.735	0.075403								0	0	0	0.34212	1	4222	4222		0	0	1				20461	2597	13492	13634	27869	27869					-0.08661488209008894
TDSPLSDLLRS	11	Unmodified	_TDSPLSDLLRS_					0	0	0			REV__nc|ENSG00000149131|P05155-2|SERPING1	REV__nc|ENSG00000149131|P05155-2|SERPING1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87786865234375	3	401.878704	1202.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.953	1	27.953	27.453	28.453	0								0	0	0	0.32823	1	3695	3695		2.2527	1.0379	1		+		20462	9605	13493	13635	27870	27870					0.02107870601344075
TDVCSFSFAL	10	Unmodified	_TDVCSFSFAL_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7796020507812	2	545.2497	1088.48485	-0.37089	-0.00020223	-2.2018	-0.0012006	-2.5727	-0.0014028	545.2470256541806	42.568	0.36976	42.568	42.395	42.764	0					35	12	4	0	0	0	0.31731	1	8047	8047		6.2058	1.4498	1	66240			20463	7577	13494	13636	27871	27871					-0.055856022823036255
TDVDYFSF	8	Unmodified	_TDVDYFSF_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7255859375	2	497.21364	992.412728	-0.013699	-6.8111E-06	-0.74192	-0.00036889	-0.75562	-0.0003757	497.2133391584893	29.89	0.25637	29.965	29.831	30.088	0.075403					17	14	2	0	0	0	0.3576	1	4117	4117		2.3027	1.6124	1	9651			20464	1193	13495	13637	27872	27872					-0.08378193364364961
TDVTKYRLEW	10	Unmodified	_TDVTKYRLEW_					0	0	0		FNDC3A|p.E791K|1|0.22|ENSG00000102531|chr13:49197755-49197755|G/A|missense_variant	FNDC3A|p.E791K|1|0.22|ENSG00000102531|chr13:49197755-49197755|G/A|missense_variant	FNDC3A|p.E791K|1|0.22|ENSG00000102531|chr13:49197755-49197755|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5633239746094	3	437.562827	1309.66665	0.36287	0.00015878	-0.49337	-0.00021588	-0.1305	-5.7103E-05	437.56260835107247	56.91	0.58611	56.91	56.6	57.187	0					52	21	4	0	0	0	0.45034	1	12480	12480		4.7159	0.30977	1	209920			20465	7340	13496	13638	27873	27873					0.024204537349532984
TDVWFPWL	8	Unmodified	_TDVWFPWL_					0	0	0			REV__ENST00000532742.5_1_14:24684941-24685236:-|nuORF	REV__ENST00000532742.5_1_14:24684941-24685236:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2662963867188	2	532.26601	1062.51747	0.20649	0.00010991	-0.81841	-0.00043561	-0.61191	-0.0003257	532.2656219553785	34.488	0.43998	34.565	34.336	34.776	0.076244					33	20	2	0	0	0	0.53345	1	5537	5537		5.7604	0.028577	1	67418	+		20466	10996	13497	13639	27874	27874					-0.01129027097135804
TEADAEKTF	9	Unmodified	_TEADAEKTF_					0	0	0		ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENSG00000115053|ENST00000322723|NCL	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENST00000494618.1_1_2:232322276-232325237:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.78497314453125	2	506.235104	1010.45566	-0.15054	-7.6206E-05	-0.21568	-0.00010918	-0.36621	-0.00018539	506.2347872264229	29.801	0.44959	29.877	29.71	30.16	0.075403					58	27	3	0	0	0	0.25162	1	4097	4097		8.1555	2.3951	1	40775			20467	1871	13498	13640	27875	27875					-0.04915423306943012
TEAHKHIHK	9	Unmodified	_TEAHKHIHK_					0	0	0			REV__ENSG00000247746|ENST00000500968|USP51	REV__ENSG00000247746|ENST00000500968|USP51	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2698364257812	2	550.801614	1099.58868	-0.030169	-1.6617E-05	-1.0527	-0.00057983	-1.0829	-0.00059645	550.8010182518838	31.201	0.42283	31.201	31.024	31.447	0					29	20	2	0	0	0	0.25875	1	4649	4649		1.8442	0.19162	1	20116	+		20468	11074	13499	13641	27876	27876					0.04286485660213657
TECLEQSR	8	Unmodified	_TECLEQSR_					0	0	0			REV__ENST00000480206.1_1_7:130040368-130041766:-|nuORF	REV__ENST00000480206.1_1_7:130040368-130041766:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2210693359375	2	483.221474	964.428395	-0.31287	-0.00015118	-0.0030909	-1.4936E-06	-0.31596	-0.00015268	483.2214331461805	25.345	0.53092	25.441	25.113	25.644	0.096073					79	44	2	0	0	0	0.53894	1	2873	2873		2.0598	0	1	43670	+		20469	12080	13500	13642	27877	27877					-0.055242301189764476
TECYISKL	8	Unmodified	_TECYISKL_					0	0	0		ENST00000503051.1_1_4:53527397-53527544:+|nuORF	ENST00000503051.1_1_4:53527397-53527544:+|nuORF	ENST00000503051.1_1_4:53527397-53527544:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2765197753906	2	478.741511	955.468469	-0.20389	-9.7612E-05	-3.5914	-0.0017193	-3.7953	-0.001817	478.74007307643825	72.027	0.73924	72.027	71.669	72.409	0					28	25	2	0	0	0	0.3576	1	16934	16934		4.3292	0	1	156940			20470	6870	13501	13643	27878	27878					-0.011046834484204737
TEDPEEPLI	9	Unmodified	_TEDPEEPLI_					0	0	0		ENSG00000140481|ENST00000398814|CCDC33	ENSG00000140481|ENST00000398814|CCDC33	ENSG00000140481|ENST00000398814|CCDC33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.750732421875	2	521.750587	1041.48662	0.39849	0.00020791	-0.12127	-6.3273E-05	0.27722	0.00014464	521.750461792739	55.882	0.4282	55.882	55.635	56.063	0					36	14	3	0	0	0	0.1182	2	12093	12093;12144		28.487	0	1	427660			20471	3015	13502	13644	27879;27880	27879					-0.03246269992700945
TEDPEEPLI	9	Unmodified	_TEDPEEPLI_					0	0	0		ENSG00000140481|ENST00000398814|CCDC33	ENSG00000140481|ENST00000398814|CCDC33	ENSG00000140481|ENST00000398814|CCDC33	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7508544921875	2	521.750587	1041.48662	0.24775	0.00012926	0.11523	6.0123E-05	0.36298	0.00018939	521.7506643793128	55.863	0.44698	55.928	55.674	56.121	0.065128					38	15	4	0	0	0	0.15911	1	11937	11937		32.305	0	1	344730			20472	3015	13502	13644	27881	27881					-0.03246269992700945
TEEAQRRRM	9	Unmodified	_TEEAQRRRM_					0	0	0		EIF5|p.A310Pfs*13|1|0.09|ENSG00000100664|chr14:103339654-103339654|A/-|frameshift_variant;ENSG00000100664|ENST00000216554|EIF5	EIF5|p.A310Pfs*13|1|0.09|ENSG00000100664|chr14:103339654-103339654|A/-|frameshift_variant	EIF5|p.A310Pfs*13|1|0.09|ENSG00000100664|chr14:103339654-103339654|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.786865234375	2	588.798746	1175.58294	0.1656	9.7504E-05	-0.26048	-0.00015337	-0.094884	-5.5868E-05	588.7984952263242	25.758	0.37929	25.85	25.664	26.043	0.091507					73	30	3	0	0	0	0.3182	1	2916	2916		4.3292	0.73274	1	52211			20473	316	13503	13645	27882	27882					0.002170190862443633
TEEDLDLVTL	10	Unmodified	_TEEDLDLVTL_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2908325195312	2	574.290076	1146.5656	0.1274	7.3162E-05	1.1699	0.00067184	1.2973	0.000745	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.28643	9	6251	6251;6389;6483;6583;6630;6678;6729;6836;7332		24.021	4.8516	1	8357100			20474	4861	13504	13646	27883;27884;27885;27886;27887;27888;27889;27890;27891	27883					-0.0018204275841071649
TEEDLDLVTL	10	Unmodified	_TEEDLDLVTL_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2908935546875	2	574.290076	1146.5656	0.16034	9.2081E-05	1.1336	0.00065102	1.2939	0.0007431	574.2910473762183	35.506	4.4992	35.585	35.279	39.778	0.078827					435	173	5	0	0	0	0.22666	11	5981	5757;5981;6022;6112;6160;6250;6295;6409;6463;6506;6553		30.637	6.0374	1	7724500			20475	4861	13504	13646	27892;27893;27894;27895;27896;27897;27898;27899;27900;27901;27902	27893					-0.0018204275841071649
TEEHVWST	8	Unmodified	_TEEHVWST_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7226257324219	2	494.722164	987.429775	0.096068	4.7527E-05	0.079988	3.9572E-05	0.17606	8.7099E-05	494.7221726592305	33.292	0.66886	33.366	33.117	33.786	0.074322					60	26	3	0	0	0	0.54081	1	5247	5247		0.79363	0	1	164150	+		20476	11127	13505	13647	27903	27903					-0.06444272758551506
TEEQMAET	8	Unmodified	_TEEQMAET_					0	0	0		nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1	nc|ENSG00000147601|P54274-2|TERF1	nc|ENSG00000147601|P54274-2|TERF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3283996582031	2	469.692215	937.369877	-0.27372	-0.00012856	1.4825	0.00069632	1.2088	0.00056776	469.6927880676442	28.408	0.77437	28.408	27.983	28.758	0					45	38	2	0	0	0	0.3576	1	3772	3772		2.0598	0	1	24437			20477	3333	13506	13648	27904	27904					-0.10131331484103612
TEEREEAL	8	Unmodified	_TEEREEAL_					0	0	0			REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF	REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.73272705078125	2	488.732729	975.450904	-0.16748	-8.1855E-05	0.32787	0.00016024	0.16038	7.8383E-05	488.7328019588893	33.34	0.44636	33.34	33.155	33.601	0					40	16	3	0	0	0	0.52476	1	5332	5332		9.3831	2.66	1	125090	+		20478	9011	13507	13649	27905	27905					-0.03780307449699194
TEEREEAL	8	Unmodified	_TEEREEAL_					0	0	0			REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF	REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7326354980469	2	488.732729	975.450904	-0.16748	-8.1855E-05	0.32787	0.00016024	0.16038	7.8383E-05	488.7328019588893	33.34	0.44636	33.34	33.155	33.601	0					40	16	3	0	0	0	0.3393	1	5285	5285		29.082	2.8134	1	125090	+		20479	9011	13507	13649	27906	27906					-0.03780307449699194
TEEREEAL	8	Unmodified	_TEEREEAL_					0	0	0			REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF	REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7327575683594	2	488.732729	975.450904	-0.13026	-6.3663E-05	0.11888	5.8099E-05	-0.011384	-5.5639E-06	488.7328218630343	33.248	0.47569	33.322	33.117	33.593	0.074322					41	18	3	0	0	0	0.35759	1	5137	5137		14.838	0	1	95653	+		20480	9011	13507	13649	27907	27907					-0.03780307449699194
TEFFFFLF	8	Unmodified	_TEFFFFLF_					0	0	0			REV__AluJb_dup107864|chr17:42999154-42999315:-|5.467948494484028|0.0002278324850216|14.55|522.0|11|3|anti-sense	REV__AluJb_dup107864|chr17:42999154-42999315:-|5.467948494484028|0.0002278324850216|14.55|522.0|11|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2860717773438	2	549.270761	1096.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.936	1	94.936	94.436	95.436	0								0	0	0	0.38822	1	24005	24005		10.183	2.2732	1		+		20481	7708	13508	13650	27908	27908					-0.017432588116207626
TEFRNFIVW	9	Unmodified	_TEFRNFIVW_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.300048828125	2	606.314023	1210.61349	0.7306	0.00044298	-0.72594	-0.00044015	0.0046657	2.8289E-06	606.313444681795	74.697	0.24118	74.697	74.555	74.796	0					19	8	3	0	0	0	0.16392	2	17852	17808;17852		22.736	10.496	1	350590			20482	995	13509	13651	27909;27910	27910					0.016611207429377828
TEFRNFIVW	9	Unmodified	_TEFRNFIVW_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2999877929688	2	606.314023	1210.61349	0.80632	0.00048888	-0.96439	-0.00058472	-0.15807	-9.5837E-05	606.313283205258	74.679	0.24921	74.728	74.567	74.816	0.048546					20	8	3	0	0	0	0.24767	1	17676	17676		13.042	2.2185	1	311810			20483	995	13509	13651	27911	27911					0.016611207429377828
TEGGFSEGPKF	11	Unmodified	_TEGGFSEGPKF_					0	0	0			REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3053588867188	2	578.269478	1154.5244	0.50663	0.00029297	1.5391	0.00089002	2.0457	0.001183	578.2703247105858	63.03	0.81246	63.03	62.837	63.649	0					48	30	2	0	0	0	0.30229	1	14283	14283		19.362	3.2128	1	385820	+		20484	7705	13510	13652	27912	27912					-0.046677590072249586
TEHEKYLV	8	Unmodified	_TEHEKYLV_					0	0	0		nc|ENSG00000137513|Q96I59-2|NARS2;ENSG00000137513|ENST00000281038|NARS2	nc|ENSG00000137513|Q96I59-2|NARS2	nc|ENSG00000137513|Q96I59-2|NARS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7637023925781	2	509.763832	1017.51311	0.54763	0.00027916	0.39565	0.00020169	0.94328	0.00048085	509.7639544388981	54.283	0.93623	54.348	54.117	55.053	0.065128					90	44	3	0	0	0	0.50815	1	11455	11455		11.64	0	1	627800			20485	2855	13511	13653	27913	27913					0.005054636892964481
TEHEYIWGA	9	Unmodified	_TEHEYIWGA_					0	0	0			REV__ENST00000606208.5_1_20:61640803-61714695:+|nuORF	REV__ENST00000606208.5_1_20:61640803-61714695:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2667846679688	2	553.251089	1104.48762	0.27031	0.00014955	1.5708	0.00086902	1.8411	0.0010186	553.2521317611594	34.5	0.19874	34.576	34.489	34.688	0.076244					9	8	2	0	0	0	0.3354	1	5543	5543		2.0598	0.40713	1	11575	+		20486	12641	13512	13654	27914	27914					-0.06044010833147695
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7745056152344	2	509.774396	1017.53424	-0.032766	-1.6703E-05	0.07422	3.7835E-05	0.041454	2.1132E-05	509.77430088951877	33.988	0.46635	33.988	33.828	34.294	0					36	17	3	0	0	0	0.11816	1	5480	5480		28.495	12.345	1	63723			20487	2137	13513	13655	27915	27915					0.026174289981327092
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7744445800781	2	509.774396	1017.53424	0.017393	8.8665E-06	0.25967	0.00013237	0.27707	0.00014124	509.7744597814305	33.9	0.39278	33.976	33.828	34.221	0.075932					32	16	3	0	0	0	0.15482	1	5351	5351		23.79	7.6407	1	61625			20488	2137	13513	13655	27916	27916					0.026174289981327092
TEKCRKLLN	9	Unmodified	_TEKCRKLLN_					0	0	0			REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3267822265625	2	552.813333	1103.61211	0.77464	0.00042823	1.9091	0.0010554	2.6837	0.0014836	553.3167098068127	70.577	0.20069	70.637	70.577	70.777	0.060562					11	8	2	0	0	0	0.24791	1	16429	16429		10.074	0	1	100960	+		20489	9501	13514	13656	27917	27917					0.06445163382545616
TELEGPESYQK	11	Unmodified	_TELEGPESYQK_					0	0	0		ENST00000585457.5_1_17:42253853-42254417:-|nuORF	ENST00000585457.5_1_17:42253853-42254417:-|nuORF	ENST00000585457.5_1_17:42253853-42254417:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.302001953125	2	640.803882	1279.59321	-0.076195	-4.8826E-05	-4.4827	-0.0028725	-4.5589	-0.0029214	641.3020877737176	43.926	0.28509	44.014	43.901	44.186	0.088924					11	9	2	0	0	0	0.31095	1	8367	8367		1.1933	0.12188	1	59523			20490	7236	13515	13657	27918	27918					-0.03540139498181816
TELEGPESYQK	11	Unmodified	_TELEGPESYQK_					0	0	0		ENST00000585457.5_1_17:42253853-42254417:-|nuORF	ENST00000585457.5_1_17:42253853-42254417:-|nuORF	ENST00000585457.5_1_17:42253853-42254417:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	640.803882	1279.59321	-0.21353	-0.00013683	-4.4731	-0.0028664	-4.6867	-0.0030032	640.800798828175	43.994	0.38418	43.994	43.859	44.243	0	-0.010168	1.943E-06	NaN	1.1933	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56850			20491	7236	13515	13657							-0.03540139498181816
TELERAFGYY	10	Unmodified	_TELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.7985229492188	2	624.798403	1247.58225	-0.0076257	-4.7645E-06	0.25659	0.00016032	0.24897	0.00015556	624.7985551858985	58.057	0.36229	58.057	57.855	58.217	0					22	12	2	0	0	0	0.051426	1	12776	12776		57.249	40.136	1	321980			20492	1742	13516	13658	27919	27919					-0.03163497081800415
TELERAFGYY	10	Unmodified	_TELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.7987060546875	2	624.798403	1247.58225	0.17771	0.00011103	0.41036	0.00025639	0.58807	0.00036743	624.7985387149376	57.982	0.534	58.051	57.851	58.385	0.068371					34	20	2	0	0	0	0.079509	1	12617	12617		49.527	32.414	1	276740			20493	1742	13516	13658	27920	27920					-0.03163497081800415
TELLRKII	8	Unmodified	_TELLRKII_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.25433349609375	2	493.32386	984.633166	0.063326	3.124E-05	-0.40606	-0.00020032	-0.34273	-0.00016908	493.32351381786265	44.179	0.26263	44.268	44.186	44.449	0.088921					12	8	2	0	0	0	0.35759	1	8459	8459		12.532	0	1	42024	+		20494	10482	13517	13659	27921	27921					0.14023496753691234
TELLRKII	8	Unmodified	_TELLRKII_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.32386	984.633166	-0.073852	-3.6433E-05	-0.3544	-0.00017483	-0.42825	-0.00021127	493.32352495895964	44.273	0.3224	44.273	44.147	44.47	0	0.0026357	2.5977E-05	NaN	12.532	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30358	+		20495	10482	13517	13659							0.14023496753691234
TENDHSTETL	10	Unmodified	_TENDHSTETL_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.291015625	2	573.749107	1145.48366	0.14572	8.3606E-05	0.84423	0.00048437	0.98995	0.00056798	573.7497285622626	36.032	0.7751	36.032	35.836	36.611	0					73	30	5	0	0	0	0.28526	1	6116	6116		27.629	2.2295	1	170220			20496	1732	13518	13660	27922	27922					-0.08326145117507622
TENDIANFF	9	Unmodified	_TENDIANFF_					0	0	0		ENST00000490442.5_1_10:70098233-70101119:+|nuORF;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;nc|ENSG00000096746|P31942-4|HNRNPH3	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.2896728515625	2	535.743096	1069.47164	0.36812	0.00019722	0.3329	0.00017835	0.70102	0.00037556	535.7432128804805	77.484	0.38309	77.484	77.389	77.772	0					23	14	2	0	0	0	0.20294	1	18683	18683		24.991	10.153	1	307140			20497	1112	13519	13661	27923	27923					-0.060317170700500355
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(59)F	0	0	1		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7716674804688	2	570.771331	1139.52811	0.13071	7.4606E-05	0.02738	1.5628E-05	0.15809	9.0233E-05	570.7713823656943	51.507	0.86314	51.507	51.152	52.015	0					52	29	3	0	0	0	0.018465	1	10778	10778		59.368	37.831	1	187450			20498	3390	13520	13662	27924	27924		216			-0.036074125050163275
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(40)F	0	0	1		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3460083007812	2	570.771331	1139.52811	0.1491	8.51E-05	0.013312	7.5983E-06	0.16241	9.2698E-05	570.7711652391479	52.562	1.0203	52.562	52.015	53.036	0					58	35	2	0	0	0	0.064247	1	11118	11118		40.239	27.197	1	121700			20499	3390	13520	13662	27925	27925		216			-0.036074125050163275
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(48)F	0	0	1		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7716674804688	2	570.771331	1139.52811	0.24642	0.00014065	0.2297	0.00013111	0.47613	0.00027176	570.7713106726637	51.46	0.76102	51.53	51.18	51.941	0.069878					44	28	3	0	0	0	0.034936	2	10616	10616;10625		47.594	37.52	1	190250			20500	3390	13520	13662	27926;27927	27926		216			-0.036074125050163275
TENDIYNFF	9	Unmodified	_TENDIYNFF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7561645507812	2	581.756204	1161.49785	0.77561	0.00045122	-0.76849	-0.00044707	0.0071236	4.1442E-06	581.7556807082722	82.103	0.95796	82.103	81.716	82.674	0					76	33	3	0	0	0	0.0021834	2	20129	20079;20129		114.65	72.554	1	1928500			20501	4322;4358;2354	13521	13663	27928;27929	27929					-0.07643447898567501
TENDIYNFF	9	Unmodified	_TENDIYNFF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7559814453125	2	581.756204	1161.49785	0.55467	0.00032268	-0.78054	-0.00045409	-0.22587	-0.0001314	581.7558002589135	82.134	0.77135	82.156	81.846	82.617	0.021866					68	27	4	0	0	0	0.00061878	3	19968	19921;19968;20058		129.77	87.678	1	1944800			20502	4322;4358;2354	13521	13663	27930;27931;27932	27931					-0.07643447898567501
TENFKRPY	8	Unmodified	_TENFKRPY_					0	0	0			REV__ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	REV__ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7655029296875	2	527.769448	1053.52434	0.17882	9.4376E-05	1.0647	0.00056194	1.2436	0.00065632	527.7696295481361	49.233	0.58897	49.233	48.973	49.562	0					27	9	4	0	0	0	0.3576	1	10178	10178		5.7604	0.52976	1	144450	+		20503	7718	13522	13664	27933	27933					-0.00027714216571439465
TENFKRPY	8	Unmodified	_TENFKRPY_					0	0	0			REV__ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	REV__ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7658081054688	2	527.769448	1053.52434	0.080179	4.2316E-05	1.9508	0.0010296	2.0309	0.0010719	527.7706473060827	49.162	0.67738	49.238	48.981	49.658	0.076607					32	15	3	0	0	0	0.3576	1	10024	10024		5.2307	0.47466	1	123810	+		20504	7718	13522	13664	27934	27934					-0.00027714216571439465
TENLQERSW	9	Unmodified	_TENLQERSW_					0	0	0			REV__nc|ENSG00000106034|A4D0V7-2|CPED1	REV__nc|ENSG00000106034|A4D0V7-2|CPED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7806396484375	2	581.778002	1161.54145	0.62453	0.00036334	2.8924	0.0016827	3.5169	0.002046	581.7799699030294	55.532	1.3341	55.597	54.758	56.092	0.065128					99	51	4	0	0	0	0.25979	1	11931	11931		11.64	0	1	1257500	+		20505	8564	13523	13665	27935	27935					-0.03285838401438923
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.8917236328125	3	486.891783	1457.65352	-0.3278	-0.0001596	0.042236	2.0565E-05	-0.28557	-0.00013904	486.89171587935675	28.519	0.77038	28.519	28.362	29.132	0					102	39	4	0	0	0	0.30398	1	3869	3869		17.572	16.357	1	183140			20506	3421	13524	13666	27936	27936					-0.05700029115087091
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.8917236328125	3	486.891783	1457.65352	-0.29917	-0.00014567	0.26151	0.00012733	-0.037666	-1.8339E-05	486.89190762740145	28.465	0.77947	28.548	28.376	29.156	0.082134					121	50	5	0	0	0	0.38258	2	3704	3704;3746		8.2864	7.1767	1	241780			20507	3421	13524	13666	27937;27938	27937					-0.05700029115087091
TEPHLLAL	8	Unmodified	_TEPHLLAL_					0	0	0		ENSG00000108950|ENST00000592554|FAM20A;ENST00000226094.9_1_17:66533620-66538255:-|nuORF	ENSG00000108950|ENST00000592554|FAM20A	ENSG00000108950|ENST00000592554|FAM20A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	447.2579650878906	2	447.258185	892.501818	0.29926	0.00013385	-0.45128	-0.00020184	-0.15201	-6.7989E-05	447.2578345761045	51.143	0.67598	51.143	50.886	51.562	0					60	22	4	0	0	0	0.12982	1	10662	10662		49.669	2.748	1	825550			20508	1616	13525	13667	27939	27939					0.05126686385801804
TEPNISEVP	9	Unmodified	_TEPNISEVP_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.25433349609375	2	493.245472	984.476391	0.068738	3.3905E-05	-0.37695	-0.00018593	-0.30821	-0.00015202	493.24519199443483	44.441	0.58075	44.528	44.244	44.825	0.08754					29	20	2	0	0	0	0.25579	1	8459	8459		4.3292	1.7518	1	77477	+		20509	10307	13526	13668	27940	27940					-0.0164683292726977
TEPNISEVP	9	Unmodified	_TEPNISEVP_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.245472	984.476391	-0.092933	-4.5839E-05	-0.63503	-0.00031322	-0.72796	-0.00035906	493.2451133151819	44.531	0.64076	44.531	44.243	44.884	0	0.0011204	-5.2149E-05	NaN	4.3292	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66102	+		20510	10307	13526	13668							-0.0164683292726977
TEPQSWTLT	9	Unmodified	_TEPQSWTLT_					0	0	0			REV__nc|ENSG00000136933|Q7Z6M1-2|RABEPK	REV__nc|ENSG00000136933|Q7Z6M1-2|RABEPK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7423095703125	2	531.758746	1061.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.779	1	41.868	41.368	42.368	0.089764								0	0	0	0.25692	1	7702	7702		7.9102	2.6133	1		+		20511	9260	13527	13669	27941	27941					-0.025351440359372646
TEQDSKDSTY	10	Unmodified	_TEQDSKDSTY_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.2490234375	2	587.24894	1172.48333	-0.15767	-9.259E-05	-0.28386	-0.0001667	-0.44153	-0.00025929	587.2490080894639	18.459	0.43564	18.459	18.288	18.723	0					81	49	3	0	0	0	0.46899	1	1118	1118		1.1933	0.12188	1	33468			20512	7593	13528	13670	27942	27942					-0.09601564837362275
TEQLVPEPE	9	Unmodified	_TEQLVPEPE_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2717895507812	2	521.258579	1040.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.701	1	52.701	52.201	53.201	0								0	0	0	0.22204	1	11134	11134		14.838	0.93222	1		+		20513	9736	13529	13671	27943	27943					-0.01602563755795927
TERILAAAF	9	Unmodified	_TERILAAAF_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-2|TNS2;TNS2|p.K172Sfs*14|1|0.17|ENSG00000111077|chr12:53054433-53054433|A/-|frameshift_variant;ENST00000549498.5_1_12:53442984-53449630:+|nuORF	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.76153564453125	2	496.282192	990.549831	-0.23665	-0.00011745	-0.14125	-7.0101E-05	-0.3779	-0.00018755	496.2820434883431	41.973	0.58722	42.063	41.844	42.431	0.089764					38	22	2	0	0	0	0.25416	1	7862	7862		5.2307	0	1	86382			20514	1690	13530	13672	27944	27944					0.05417760305840602
TERPRDGR	8	Unmodified	_TERPRDGR_					0	0	0		ENST00000252329.3_1_7:1610113-1610329:-|nuORF	ENST00000252329.3_1_7:1610113-1610329:-|nuORF	ENST00000252329.3_1_7:1610113-1610329:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7481689453125	2	493.759946	985.50534	-0.10546	-5.207E-05	2.2702	0.0011209	2.1647	0.0010688	493.76102355885035	25.066	0.26174	25.066	24.902	25.164	0					26	19	2	0	0	0	0.53494	1	2841	2841		4.756	0.42677	1	18529			20515	5838	13531	13673	27945	27945					0.012007492123757402
TERYSEFWP	9	Unmodified	_TERYSEFWP_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.11895751953125	3	405.520739	1213.54039	0.42574	0.00017265	-1.7704	-0.00071793	-1.3446	-0.00054528	405.8544756328481	90.159	0.09182	90.159	90.118	90.21	0					7	4	2	0	0	0	0.25594	1	22540	22540		2.4985	0	1	252010	+		20516	9694	13532	13674	27946	27946					-0.05784052770331982
TESYKETL	8	Unmodified	_TESYKETL_					0	0	0		nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-4|RBM10	nc|ENSG00000182872|P98175-4|RBM10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7403869628906	2	485.740022	969.465492	-0.040401	-1.9625E-05	0.25875	0.00012568	0.21835	0.00010606	485.74007201611175	59.367	1.4166	59.44	59.161	60.577	0.072338					107	53	4	0	0	0	0.4772	1	13241	13241		15.847	0	1	1367100			20517	4897	13533	13675	27947	27947					-0.020462353015659573
TETLWDQVL	9	Unmodified	_TETLWDQVL_					0	0	0		nc|nan|Q6X4T0-2|C12orf54;ENSG00000177627|ENST00000548364|C12orf54	nc|nan|Q6X4T0-2|C12orf54	nc|nan|Q6X4T0-2|C12orf54	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2396240234375	2	552.782222	1103.54989	0.52501	0.00029022	-0.9037	-0.00049955	-0.37869	-0.00020933	552.7814958039148	62.272	0.79579	62.345	62.111	62.907	0.073421					69	27	3	0	0	0	0.2229	1	13939	13939		19.257	0	1	717840			20518	4710	13534	13676	27948	27948					0.0022571551517103217
TETQALAQRTQ	11	Unmodified	_TETQALAQRTQ_					0	0	0		ENST00000468063.1_1_2:95537336-95538738:+|nuORF;ENSG00000163060|ENST00000295201|TEKT4	ENST00000468063.1_1_2:95537336-95538738:+|nuORF	ENST00000468063.1_1_2:95537336-95538738:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8230590820312	2	623.822941	1245.63133	-0.27344	-0.00017058	0.42717	0.00026648	0.15373	9.5902E-05	623.8233852065356	34.154	1.2969	34.154	33.883	35.18	0					165	49	6	0	0	0	0.32676	1	5670	5670		14.957	0.73899	1	3146500			20519	3874	13535	13677	27949	27949					0.01833791207127433
TETQALAQRTQ	11	Unmodified	_TETQALAQRTQ_					0	0	0		ENST00000468063.1_1_2:95537336-95538738:+|nuORF;ENSG00000163060|ENST00000295201|TEKT4	ENST00000468063.1_1_2:95537336-95538738:+|nuORF	ENST00000468063.1_1_2:95537336-95538738:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8234252929688	2	623.822941	1245.63133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.19	1	35.19	34.69	35.69	0								0	0	0	0.33939	1	5843	5843		0.96228	0.43751	1				20520	3874	13535	13677	27950	27950					0.01833791207127433
TETQALAQRTQ	11	Unmodified	_TETQALAQRTQ_					0	0	0		ENST00000468063.1_1_2:95537336-95538738:+|nuORF;ENSG00000163060|ENST00000295201|TEKT4	ENST00000468063.1_1_2:95537336-95538738:+|nuORF	ENST00000468063.1_1_2:95537336-95538738:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.8229370117188	2	623.822941	1245.63133	-0.073333	-4.5747E-05	0.28357	0.0001769	0.21024	0.00013115	623.8232400181495	34.09	1.3981	34.167	33.902	35.3	0.076244					166	58	6	0	0	0	0.38189	1	5530	5530		8.4443	0	1	2817600			20521	3874	13535	13677	27951	27951					0.01833791207127433
TEVHPCRRL	9	Unmodified	_TEVHPCRRL_					0	0	0			REV__nc|ENSG00000179583|P33076|CIITA	REV__nc|ENSG00000179583|P33076|CIITA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8601684570312	2	555.795475	1109.5764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.17	1	115.17	114.67	115.67	0								0	0	0	0.28631	1	29388	29388		1.8442	0.51471	1		+		20522	10479	13536	13678	27952	27952					0.02599125925530643
TEVLFVFFN	9	Unmodified	_TEVLFVFFN_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-2|EBPL	REV__nc|ENSG00000123179|Q9BY08-2|EBPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2913208007812	2	558.292225	1114.5699	0.2084	0.00011635	-0.055532	-3.1003E-05	0.15287	8.5346E-05	558.2921590661776	104.96	0.23486	104.96	104.88	105.12	0					32	20	2	0	0	0	0.32112	1	27002	27002		3.9444	0	1	81200	+		20523	12164	13537	13679	27953	27953					0.017195112458011863
TEVQEEWF	8	Unmodified	_TEVQEEWF_					0	0	0			REV__ENSG00000166343|ENST00000299432|MSS51	REV__ENSG00000166343|ENST00000299432|MSS51	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.7844848632812	2	534.237647	1066.46074	0.37334	0.00019945	1.1349	0.00060628	1.5082	0.00080574	534.2389110230877	88.855	0.24461	88.855	88.764	89.009	0					10	8	2	0	0	0	0.3576	1	22185	22185		5.7604	0	1	66855	+		20524	10073	13538	13680	27954	27954					-0.06983119444339536
TEVTGHRW	8	Unmodified	_TEVTGHRW_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;ENST00000576925.3_1_19:572634-579657:+|nuORF;chr19:579656-581444|521|48.7|0.0|22.22|+|ENST00000618112|BSG,None	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2459411621094	2	493.246141	984.477728	0.02438	1.2026E-05	1.7755	0.00087577	1.7999	0.0008878	493.24609510071883	24.793	0.45893	24.889	24.787	25.246	0.096073					95	42	3	0	0	0	0.51415	2	2672	2672;2685		10.824	2.2306	1	39390			20525	4490	13539	13681	27955;27956	27955					-0.015131540478705574
TEWTLWVF	8	Unmodified	_TEWTLWVF_					0	0	0		ENSG00000179046|ENST00000682553|TRIML2;chr4:188104932-188105180|220|10.44|0.2|5.7|-|ENST00000512729|TRIML2,TRIML2;chr4:188099175-188101056|229|12.55|0.3|5.38|-|ENST00000512729|TRIML2,TRIML2;chr4:188091941-188097061|202|10.38|0.22|5.59|-|ENST00000512729|TRIML2,TRIML2	ENSG00000179046|ENST00000682553|TRIML2	ENSG00000179046|ENST00000682553|TRIML2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2743530273438	2	541.271293	1080.52803	0.42389	0.00022944	2.8652	0.0015509	3.2891	0.0017803	541.2729272792822	100.84	0.33626	100.84	100.63	100.97	0					34	21	2	0	0	0	0.48651	1	25795	25795		14.582	2.0501	1	62423			20526	168	13540	13682	27957	27957					-0.009010444427076436
TFAARKKLL	9	Unmodified	_TFAARKKLL_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2915649414062	2	524.337301	1046.66005	-0.034121	-1.7891E-05	0.027818	1.4586E-05	-0.0063034	-3.3051E-06	524.3373469114703	45.908	0.34682	45.994	45.788	46.135	0.085617					23	13	2	0	0	0	0.25174	1	8912	8912		7.2892	0.56607	1	87858	+		20527	9935	13541	13683	27958	27958					0.13858605364907817
TFADFLHYII	10	Unmodified	_TFADFLHYII_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3241577148438	2	620.324057	1238.63356	0.37659	0.00023361	-1.2734	-0.0007899	-0.89677	-0.00055629	620.3234131370459	66.686	0.98267	66.751	66.425	67.408	0.065063					63	36	2	0	0	0	0.44246	1	15296	15296		6.2058	0	1	204180	+		20528	9803	13542	13684	27959	27959					0.02378871682890349
TFADFLHYII	10	Unmodified	_TFADFLHYII_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	620.324057	1238.63356	0.29912	0.00018555	-1.5021	-0.00093176	-1.2029	-0.00074621	620.3231634664979	66.752	0.90427	66.752	66.428	67.332	0	7.866E-05	-0.000129	NaN	6.2058	61	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283730	+		20529	9803	13542	13684							0.02378871682890349
TFAERSSGYF	10	Unmodified	_TFAERSSGYF_					0	0	0			REV__nc|ENSG00000175164|P16442|ABO	REV__nc|ENSG00000175164|P16442|ABO	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7702026367188	2	582.769645	1163.52474	0.5384	0.00031376	-0.14022	-8.1713E-05	0.39818	0.00023205	582.7693433459294	53.436	1.3665	53.436	53.085	54.451	0					100	52	2	0	0	0	0.43214	1	11356	11356		8.1555	0.24537	1	215440	+		20530	10372	13543	13685	27960	27960					-0.05048339287372983
TFDAGLQAF	9	Unmodified	_TFDAGLQAF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.23736572265625	2	485.23745	968.460347	0.095408	4.6296E-05	0.0048102	2.3341E-06	0.10022	4.863E-05	485.23730185823104	71.431	0.62514	71.431	71.208	71.834	0					33	21	2	0	0	0	0.0569	1	16831	16831		41.84	14.956	1	112170			20531	5313	13544	13686	27961	27961					-0.025144943735199377
TFDAGLQAF	9	Unmodified	_TFDAGLQAF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2373962402344	2	485.23745	968.460347	0.097554	4.7337E-05	0.13123	6.3676E-05	0.22878	0.00011101	485.2374065280742	71.303	0.60558	71.362	71.183	71.789	0.058578					31	21	2	0	0	0	0.10833	1	16697	16697		30.637	3.7529	1	140520			20532	5313	13544	13686	27962	27962					-0.025144943735199377
TFDAQIVII	9	Unmodified	_TFDAQIVII_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.29254150390625	2	510.292225	1018.5699	0.27701	0.00014136	-2.232	-0.001139	-1.955	-0.00099761	510.79219675656105	83.755	0.62308	83.777	83.414	84.037	0.021751					48	21	3	0	0	0	0.16392	1	20432	20432		22.736	0	1	140300			20533	1365	13545	13687	27963	27963					0.061355112458159056
TFDASRTTF	9	Unmodified	_TFDASRTTF_					0	0	0		ENST00000554315.5_1_14:73753704-73876743:-|nuORF;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	ENST00000554315.5_1_14:73753704-73876743:-|nuORF	ENST00000554315.5_1_14:73753704-73876743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2509765625	2	523.251089	1044.48762	-0.13869	-7.2568E-05	-0.016205	-8.4793E-06	-0.15489	-8.1047E-05	523.2509590729233	43.794	0.84562	43.794	43.572	44.418	0					69	29	3	0	0	0	0.032232	3	8419	8419;8467;8559		49.527	25.507	1	231320			20534	7115	13546	13688	27964;27965;27966	27964					-0.032840108331583906
TFDASRTTF	9	Unmodified	_TFDASRTTF_					0	0	0		ENST00000554315.5_1_14:73753704-73876743:-|nuORF;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	ENST00000554315.5_1_14:73753704-73876743:-|nuORF	ENST00000554315.5_1_14:73753704-73876743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2509765625	2	523.251089	1044.48762	-0.092799	-4.8557E-05	-0.15902	-8.321E-05	-0.25182	-0.00013177	523.250909082899	43.689	0.92522	43.778	43.555	44.48	0.088924					69	32	3	0	0	0	0.047066	2	8268	8268;8316		43.982	19.961	1	182410			20535	7115	13546	13688	27967;27968	27967					-0.032840108331583906
TFDAVLIVGAL	11	Unmodified	_TFDAVLIVGAL_					0	0	0		ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8265991210938	2	559.826432	1117.63831	0.55577	0.00031114	-0.41215	-0.00023073	0.14363	8.0406E-05	559.8261822199762	102.54	0.57356	102.58	102.33	102.9	0.040916					137	42	4	0	0	0	0.38057	1	26094	26094		8.7454	0	1	2129800			20536	4065	13547	13689	27969	27969					0.08419755825661923
TFDLTVVSY	9	Unmodified	_TFDLTVVSY_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7662963867188	2	522.76604	1043.51753	0.27748	0.00014506	0.091832	4.8007E-05	0.36932	0.00019307	522.7660319901895	77.865	0.62053	77.865	77.685	78.305	0					34	20	2	0	0	0	0.0097093	2	18815	18815;18869		68.081	28.123	1	116340			20537	2415	13548	13690	27970;27971	27970					-0.0024907188781071454
TFDLTVVSY	9	Unmodified	_TFDLTVVSY_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7661743164062	2	522.76604	1043.51753	0.3734	0.0001952	-0.087608	-4.5798E-05	0.28579	0.0001494	522.765685812151	77.841	0.75609	77.876	77.649	78.405	0.034485					42	25	3	0	0	0	0.047633	1	18641	18641		43.858	16.975	1	154830			20538	2415	13548	13690	27972	27972					-0.0024907188781071454
TFDMEDEY	8	Unmodified	_TFDMEDEY_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.19287109375	2	525.192048	1048.36954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.023	1	20.119	19.619	20.619	0.095232								0	0	0	0.38822	1	1407	1407		0.69038	0	1				20539	5562	13549	13691	27973	27973					-0.15270751203956934
TFDVSLLTI	9	Unmodified	_TFDVSLLTI_					0	0	0		ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000044574|ENST00000324460|HSPA5	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7844543457031	2	504.784233	1007.55391	0.33461	0.00016891	0.080235	4.0502E-05	0.41485	0.00020941	504.78418751902694	91.396	1.3943	91.396	91.093	92.487	0					78	51	3	0	0	0	0.0020132	2	22962	22916;22962		115.69	0	1	654870			20540	553	13550	13692	27974;27975	27975					0.050438050089155695
TFDVSLLTI	9	Unmodified	_TFDVSLLTI_					0	0	0		ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000044574|ENST00000324460|HSPA5	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7843933105469	2	504.784233	1007.55391	0.16566	8.362E-05	0.35473	0.00017906	0.52039	0.00026268	504.78429861948985	91.371	0.88065	91.406	91.11	91.991	0.035446					61	31	3	0	0	0	0.0010022	2	22742	22742;22789		123.45	0	1	424330			20541	553	13550	13692	27976;27977	27976					0.050438050089155695
TFDVSPKAV	9	Unmodified	_TFDVSPKAV_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.260986328125	2	482.260925	962.507297	-0.21342	-0.00010293	0.087306	4.2104E-05	-0.12612	-6.0821E-05	482.26077828556254	45.39	0.54287	45.477	45.211	45.754	0.087543					48	20	3	0	0	0	0.24767	1	8753	8753		13.042	2.2185	1	152240			20542	3026	13551	13693	27978	27978					0.024543651776298248
TFDWDAYI	8	Unmodified	_TFDWDAYI_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.729248046875	2	515.729458	1029.44436	0.30286	0.00015619	-1.5139	-0.00078077	-1.2111	-0.00062458	515.7290050603624	37.072	0.908	37.157	36.72	37.628	0.084476					70	34	3	0	0	0	0.53423	1	6323	6323		5.2307	0	1	48705			20543	382	13552	13694	27979	27979					-0.06918200610448366
TFEELHFEI	9	Unmodified	_TFEELHFEI_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8;CASP8|p.T272_T273del|1|0.35|ENSG00000064012|chr2:201284823-201284828|GACCAC/-|inframe_deletion	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.781982421875	2	582.782222	1163.54989	0.21675	0.00012632	0.84055	0.00048986	1.0573	0.00061617	582.7818186152456	73.361	1.0403	73.361	72.909	73.949	0					99	36	4	0	0	0	0.2229	1	17494	17494		19.257	9.1831	1	1634900			20544	106	13553	13695	27980	27980					-0.025342844847955348
TFEVPNKII	9	Unmodified	_TFEVPNKII_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7930908203125	2	530.8055	1059.59645	0.38329	0.00020345	-0.43274	-0.0002297	-0.049449	-2.6248E-05	530.8052663468185	57.786	0.72297	57.854	57.437	58.16	0.068371					47	26	2	0	0	0	0.27332	1	12574	12574		10.074	0	1	153630			20545	3920	13554	13696	27981	27981					0.0690320013713972
TFFLFHGL	8	Unmodified	_TFFLFHGL_					0	0	0		ENST00000508798.5_1_4:99392964-99393330:-|nuORF	ENST00000508798.5_1_4:99392964-99393330:-|nuORF	ENST00000508798.5_1_4:99392964-99393330:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2606201171875	2	491.263271	980.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.34	1	103.34	102.84	103.84	0								0	0	0	0.38822	1	26561	26561		0.79363	0.10326	1				20546	6900	13555	13697	27982	27982					0.020952941110408574
TFFPFHEYF	9	Unmodified	_TFFPFHEYF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.2608642578125	2	617.782025	1233.5495	-0.22561	-0.00013938	0.49465	0.00030558	0.26904	0.00016621	617.7822988785044	78.289	0.63235	78.289	78.097	78.73	0					31	21	2	0	0	0	0.23975	1	18917	18917		14.838	6.6827	1	92972			20547	478	13556	13698	27983	27983					-0.057936594140073794
TFFPFHEYF	9	Unmodified	_TFFPFHEYF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	617.782025	1233.5495	0.013705	8.4666E-06	0.50403	0.00031138	0.51773	0.00031985	617.7821035217188	78.303	0.60019	78.333	78.112	78.712	0.030159	0.021973	5.3009E-06	NaN	14.838	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97860			20548	478	13556	13698							-0.057936594140073794
TFHQAAAAESF	11	Unmodified	_TFHQAAAAESF_					0	0	0			REV__ENSG00000146950|ENST00000380913|SHROOM2	REV__ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2742919921875	2	590.275095	1178.53564	-0.15864	-9.3642E-05	-0.045892	-2.7089E-05	-0.20453	-0.00012073	590.2750759765529	22.737	0.2991	22.737	22.612	22.911	0					31	27	2	0	0	0	0.41892	1	2196	2196		0	0	1	11259	+		20549	9554	13557	13699	27984	27984					-0.0464893691312227
TFISYSVTF	9	Unmodified	_TFISYSVTF_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7682495117188	2	532.768583	1063.52261	0.59323	0.00031606	-0.78353	-0.00041744	-0.1903	-0.00010138	532.7681290115339	79.533	0.61497	79.533	79.282	79.897	0					48	21	3	0	0	0	0.0042692	1	19375	19375		99.799	45.966	1	263070			20550	543	13558	13700	27985	27985					-0.006607680252045611
TFISYSVTF	9	Unmodified	_TFISYSVTF_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7683715820312	2	532.768583	1063.52261	0.45795	0.00024398	-0.32777	-0.00017462	0.13018	6.9357E-05	532.7683622074721	79.566	0.80133	79.592	79.305	80.106	0.026436					59	28	3	0	0	0	0.0034016	1	19209	19209		107.19	53.354	1	247370			20551	543	13558	13700	27986	27986					-0.006607680252045611
TFITVSALF	9	Unmodified	_TFITVSALF_					0	0	0		ENSG00000198205|ENST00000358697|ZXDA;ENSG00000198455|ENST00000374888|ZXDB;nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7817687988281	2	499.781493	997.548434	0.51636	0.00025807	0.029611	1.4799E-05	0.54597	0.00027287	499.78138746723187	91.822	0.42896	91.822	91.707	92.136	0					24	15	2	0	0	0	0.16036	2	23125	23075;23125		23.148	0	1	78829			20552	5352	13559	13701	27987;27988	27988					0.049561262170982445
TFITVSALF	9	Unmodified	_TFITVSALF_					0	0	0		ENSG00000198205|ENST00000358697|ZXDA;ENSG00000198455|ENST00000374888|ZXDB;nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.78179931640625	2	499.781493	997.548434	0.38189	0.00019086	0.15188	7.5907E-05	0.53378	0.00026677	499.7814518721496	91.761	0.6689	91.798	91.645	92.314	0.03653					32	23	2	0	0	0	0.092418	2	22893	22893;22951		34.102	5.6156	1	82948			20553	5352	13559	13701	27989;27990	27989					0.049561262170982445
TFKELANEF	9	Unmodified	_TFKELANEF_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7755737304688	2	549.776939	1097.53933	0.54606	0.00030021	-1.3849	-0.00076141	-0.83888	-0.0004612	549.7761179928565	55.488	0.48825	55.553	55.242	55.73	0.065128					37	18	3	0	0	0	0.11816	2	11857	11813;11857		28.495	13.78	1	90050			20554	682	13560	13702	27991;27992	27992					-0.005542671392504417
TFKELANEF	9	Unmodified	_TFKELANEF_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	549.776939	1097.53933	0.56983	0.00031328	-0.1724	-9.478E-05	0.39743	0.0002185	549.7767344946127	55.381	0.81364	55.381	55.166	55.979	0	-0.086329	0.00069588	NaN	28.495	37	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75022			20555	682	13560	13702							-0.005542671392504417
TFKHYQTRY	9	Unmodified	_TFKHYQTRY_					0	0	0			REV__nc|ENSG00000197893|Q86VF7-4|NRAP	REV__nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8753662109375	3	415.212128	1242.61456	-0.26139	-0.00010853	-1.2276	-0.0005097	-1.489	-0.00061824	415.2116337053795	30.672	0.086559	30.747	30.685	30.772	0.075403					6	4	2	0	0	0	0.26011	1	4361	4361		0.26902	0	1	9912.9	+		20556	10876	13561	13703	27993	27993					0.0029533511183217342
TFKKHQQL	8	Unmodified	_TFKKHQQL_					0	0	0		ENST00000470606.5_1_13:28000472-28009731:+|nuORF;nc|ENSG00000122034|Q92664-2|GTF3A;ENSG00000122034|ENST00000381140|GTF3A	ENST00000470606.5_1_13:28000472-28009731:+|nuORF	ENST00000470606.5_1_13:28000472-28009731:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7288818359375	2	515.295633	1028.57671	0.028315	1.4591E-05	-0.27793	-0.00014322	-0.24961	-0.00012863	515.2955535189558	33.717	0.44161	33.717	33.491	33.933	0					20	15	2	0	0	0	0.3576	1	5406	5406		2.0598	0	1	22796			20557	2172	13562	13704	27994	27994					0.06356868917032443
TFLDDSGSLNW	11	Unmodified	_TFLDDSGSLNW_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8478393554688	2	627.785492	1253.55643	0.32923	0.00020668	0.026856	1.686E-05	0.35608	0.00022354	627.7853196568274	82.728	0.17484	82.749	82.589	82.764	0.021744					8	5	2	0	0	0	0.2125	1	20118	20118		49.527	25.737	1	72638			20558	4716	13563	13705	27995	27995					-0.06020391324091179
TFLESTYLY	9	Unmodified	_TFLESTYLY_					0	0	0			REV__FGF13|p.P139T|1|0.61|ENSG00000129682|chrX:138635643-138635643|G/T|missense_variant	REV__FGF13|p.P139T|1|0.61|ENSG00000129682|chrX:138635643-138635643|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.780029296875	2	568.779148	1135.54374	0.34074	0.00019381	0.64838	0.00036878	0.98912	0.00056259	568.7793308435579	75.092	0.38849	75.136	75.024	75.412	0.044037					26	13	3	0	0	0	0.20367	1	17817	17817		18.135	1.1927	1	309970	+		20559	9041	13564	13706	27996	27996					-0.018608027163281804
TFLESTYLY	9	Unmodified	_TFLESTYLY_					0	0	0			REV__FGF13|p.P139T|1|0.61|ENSG00000129682|chrX:138635643-138635643|G/T|missense_variant	REV__FGF13|p.P139T|1|0.61|ENSG00000129682|chrX:138635643-138635643|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.779148	1135.54374	0.34074	0.00019381	0.64838	0.00036878	0.98912	0.00056259	568.7793308435579	75.092	0.38849	75.136	75.024	75.412	0.044037	-0.0057039	0.00031942	NaN	18.135	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309970	+		20560	9041	13564	13706							-0.018608027163281804
TFLIQIMSH	9	Unmodified	_TFLIQIMSH_					0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8043823242188	2	545.291702	1088.56885	0.58041	0.00031649	3.2342	0.0017636	3.8146	0.0020801	545.7948114859505	97.507	0.24426	97.507	97.461	97.705	0					24	10	3	0	0	0	0.25699	1	24842	24842		3.5965	0	1	58438	+		20561	10546	13565	13707	27997	27997					0.0281097360525564
TFMGYWTI	8	Unmodified	_TFMGYWTI_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.27996826171875	2	509.738771	1017.46299	0.16491	8.4059E-05	2.3187	0.0011819	2.4836	0.001266	509.7408790861719	50.265	0.5705	50.265	49.968	50.539	0					34	20	2	0	0	0	0.3576	1	10462	10462		4.756	0	1	86336			20562	1327	13566	13708	27998	27998					-0.04504362240209048
TFNDKIDKDF	10	Unmodified	_TFNDKIDKDF_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;ENST00000399586.2_1_X:74960734-74966719:-|nuORF	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2747192382812	2	621.803685	1241.59282	0.26025	0.00016182	1.3513	0.00084027	1.6116	0.0010021	621.8042964095489	65.24	0.42535	65.24	64.973	65.398	0					17	14	2	0	0	0	0.31585	1	14893	14893		10.824	0.75	1	102640			20563	4886	13567	13709	27999	27999					-0.018315144273856276
TFNEPDSPI	9	Unmodified	_TFNEPDSPI_					0	0	0		ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3	ENST00000473691.1_1_X:79938122-79975072:-|nuORF	ENST00000473691.1_1_X:79938122-79975072:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7098693847656	2	510.237647	1018.46074	0.027405	1.3983E-05	-2.5849	-0.0013189	-2.5575	-0.0013049	510.23647649214513	34.619	0.77094	34.619	34.377	35.148	0					38	28	2	0	0	0	0.25875	1	5605	5605		1.8442	0	1	17121			20564	4076	13568	13710	28000	28000					-0.047751194443321765
TFNLLMDSF	9	Unmodified	_TFNLLMDSF_					0	0	0		ENST00000522562.5_1_5:71523001-71533927:-|nuORF;ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27	ENST00000522562.5_1_5:71523001-71533927:-|nuORF	ENST00000522562.5_1_5:71523001-71533927:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.79296875	2	544.260068	1086.50558	0.35167	0.0001914	0.27153	0.00014778	0.6232	0.00033918	544.260237514227	79.607	0.50134	79.633	79.437	79.939	0.026436					25	17	2	0	0	0	0.2094	1	19166	19166		22.736	0	1	194890			20565	1784	13569	13711	28001	28001					-0.034210119026511165
TFPLCSFFG	9	Unmodified	_TFPLCSFFG_					0	0	0			REV__ENST00000335393.8_1_19:17664253-17664490:+|nuORF	REV__ENST00000335393.8_1_19:17664253-17664490:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.74041748046875	2	509.738771	1017.46299	0.16491	8.4059E-05	2.3187	0.0011819	2.4836	0.001266	509.7408790861719	50.265	0.5705	50.265	49.968	50.539	0					34	20	2	0	0	0	0.30005	1	10440	10440		6.7232	0.36906	1	86336	+		20566	11435	13570	13712	28002	28002					-0.04504362240209048
TFPLCSFFG	9	Unmodified	_TFPLCSFFG_					0	0	0			REV__ENST00000335393.8_1_19:17664253-17664490:+|nuORF	REV__ENST00000335393.8_1_19:17664253-17664490:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.74017333984375	2	509.738771	1017.46299	0.26306	0.00013409	1.2462	0.00063525	1.5093	0.00076934	509.74045870028516	50.198	0.74123	50.271	49.979	50.72	0.07312					49	25	3	0	0	0	0.26684	1	10250	10250		10.824	1.4408	1	95057	+		20567	11435	13570	13712	28003	28003					-0.04504362240209048
TFPVEIYNQ	9	Unmodified	_TFPVEIYNQ_					0	0	0		tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2870483398438	2	555.776939	1109.53933	0.74643	0.00041485	-2.8998	-0.0016116	-2.1533	-0.0011968	556.2776062593105	100	1.097	100.04	99.769	100.87	0.042839					154	63	4	0	0	0	0.25579	1	25610	25610		4.3292	1.7518	1	734610			20568	13528	13571	13713	28004	28004					-0.01106267139243755
TFRHNSALV	9	Unmodified	_TFRHNSALV_					0	0	0		ENSG00000197385|ENST00000360311|ZNF860	ENSG00000197385|ENST00000360311|ZNF860	ENSG00000197385|ENST00000360311|ZNF860	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7952270507812	2	522.78289	1043.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.562	1	32.562	32.062	33.062	0								0	0	0	0.27782	1	5057	5057		3.5965	0	1				20569	5294	13572	13714	28005	28005					0.031193943945936553
TFSEFFGTI	9	Unmodified	_TFSEFFGTI_					0	0	0			REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF	REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7522583007812	2	524.752933	1047.49131	0.35099	0.00018418	-1.0672	-0.00056002	-0.71622	-0.00037584	524.7522682000606	47.187	0.62834	47.187	46.839	47.467	0					41	21	3	0	0	0	0.30005	1	9527	9527		6.7232	0.51738	1	122950	+		20570	11777	13573	13715	28006	28006					-0.030533410592852306
TFSFLSHIF	9	Unmodified	_TFSFLSHIF_					0	0	0			REV__ENST00000278353.9_2_11:43702285-43702444:+|nuORF	REV__ENST00000278353.9_2_11:43702285-43702444:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.315673828125	2	549.784567	1097.55458	0.45151	0.00024823	2.8747	0.0015804	3.3262	0.0018287	549.7860510221335	71.417	0.5436	71.417	71.239	71.783	0					31	18	3	0	0	0	0.2298	1	16804	16804		16.942	6.8684	1	167450	+		20571	11287	13574	13716	28007	28007					0.009706444486027976
TFSFQGTENFI	11	Unmodified	_TFSFQGTENFI_					0	0	0			REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant	REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.8040771484375	2	645.803685	1289.59282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.894	1	70.894	70.394	71.394	0								0	0	0	0.30951	1	16678	16678		11.495	4.7715	1		+		20572	12662	13575	13717	28008	28008					-0.040395144273816186
TFSFQGTENFI	11	Unmodified	_TFSFQGTENFI_					0	0	0			REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant	REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.8023681640625	2	645.803685	1289.59282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.999	1	70.999	70.499	71.499	0								0	0	0	0.30951	1	16710	16710		11.495	3.3392	1		+		20573	12662	13575	13717	28009	28009					-0.040395144273816186
TFSFQGTENFI	11	Unmodified	_TFSFQGTENFI_					0	0	0			REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant	REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.8038940429688	2	645.803685	1289.59282	0.5026	0.00032458	-0.70096	-0.00045268	-0.19836	-0.0001281	645.8029473475702	70.858	0.4849	70.917	70.775	71.26	0.058578					24	17	2	0	0	0	0.28838	1	16519	16519		19.362	13.156	1	138480	+		20574	12662	13575	13717	28010	28010					-0.040395144273816186
TFSLFFFPD	9	Unmodified	_TFSLFFFPD_					0	0	0		ENST00000380599.8_1_17:7364268-7364400:-|nuORF	ENST00000380599.8_1_17:7364268-7364400:-|nuORF	ENST00000380599.8_1_17:7364268-7364400:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2529296875	2	560.771126	1119.5277	0.4967	0.00027854	0.12832	7.1959E-05	0.62502	0.0003505	561.7769379902753	85.647	0.3672	85.647	85.482	85.849	0					34	17	3	0	0	0	0.25644	1	21140	21140		3.9444	0.66309	1	138850			20575	6286	13576	13718	28011	28011					-0.02728464162578348
TFSLVLWKT	9	Unmodified	_TFSLVLWKT_					0	0	0		ENST00000443439.6_2_5:96129606-96129657:-|nuORF	ENST00000443439.6_2_5:96129606-96129657:-|nuORF	ENST00000443439.6_2_5:96129606-96129657:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.816162109375	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.09	1	119.09	118.59	119.59	0								0	0	0	0.28631	1	30039	30039		1.8442	0	1				20576	6531	13577	13719	28012	28012					0.07411790516812289
TFSYGPDGNGF	11	Unmodified	_TFSYGPDGNGF_					0	0	0		ENST00000477811.5_1_13:21956068-21964388:-|nuORF;nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;ENSG00000180776|ENST00000400590|ZDHHC20	ENST00000477811.5_1_13:21956068-21964388:-|nuORF	ENST00000477811.5_1_13:21956068-21964388:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7593994140625	2	581.246003	1160.47745	0.65427	0.00038029	-0.77086	-0.00044806	-0.11659	-6.7766E-05	581.2459749515084	93.46	0.38951	93.46	93.268	93.658	0					35	15	3	0	0	0	0.31637	1	23599	23599		16.149	2.6412	1	152760			20577	4815	13578	13720	28013	28013					-0.09636618558374721
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7511596679688	2	529.750724	1057.4869	0.46084	0.00024413	0.43443	0.00023014	0.89527	0.00047427	529.7508532079623	57.49	1.0897	57.49	57.127	58.217	0					110	38	4	0	0	0	6.8107E-09	4	12587	12587;12635;12679;12721		164.52	120.66	1	1417200			20578	5494	13579	13721	28014;28015;28016;28017	28014					-0.03954805482203483
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7509155273438	2	529.750724	1057.4869	0.39518	0.00020935	0.40202	0.00021297	0.7972	0.00042232	529.7508173980116	57.451	1.2928	57.519	57.181	58.474	0.068375					119	49	4	0	0	0	1.7467E-05	3	12469	12469;12515;12559		141.83	97.968	1	1119000			20579	5494	13579	13721	28018;28019;28020	28018					-0.03954805482203483
TFTINFDFN	9	Unmodified	_TFTINFDFN_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7302856445312	2	559.761289	1117.50803	0.40363	0.00022594	-1.0059	-0.00056306	-0.60225	-0.00033712	559.7605605723462	96.164	0.23323	96.164	96.002	96.235	0					12	10	2	0	0	0	0.2553	1	24342	24342		5.2969	0.96765	1	55976			20580	3987	13580	13722	28021	28021					-0.04602840173311051
TFTLSMGLPFA	11	Unmodified	_TFTLSMGLPFA_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8034057617188	2	592.804642	1183.59473	0.038888	2.3053E-05	-1.5132	-0.00089701	-1.4743	-0.00087396	593.304850526384	90.19	0.59912	90.224	90.109	90.708	0.034065					53	24	3	0	0	0	0.2893	1	22430	22430		19.257	3.4098	1	237330	+		20581	9468	13581	13723	28022	28022					0.010278230568701474
TFTLSMGLPFA	11	Unmodified	_TFTLSMGLPFA_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	592.804642	1183.59473	0.25459	0.00015092	-2.5874	-0.0015338	-2.3328	-0.0013829	592.8029846883859	90.283	0.55632	90.283	90.101	90.657	0	0.029309	-0.00034277	NaN	19.257	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274320	+		20582	9468	13581	13723							0.010278230568701474
TFTPITMTF	9	Unmodified	_TFTPITMTF_					0	0	0		ENSG00000196944|ENST00000366473|OR2T4;nc|ENSG00000196944|Q8NH00|OR2T4	ENSG00000196944|ENST00000366473|OR2T4	ENSG00000196944|ENST00000366473|OR2T4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7511596679688	2	529.764986	1057.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.36	1	57.429	56.929	57.929	0.068375								0	0	0	0.20792	1	12420	12420		16.942	0	1				20583	5258	13582	13724	28023	28023					-0.01103823897278744
TFTRTTHSL	9	Unmodified	_TFTRTTHSL_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.268310546875	2	532.28018	1062.54581	0.48957	0.00026059	1.1871	0.00063184	1.6766	0.00089243	532.280942775551	62.536	0.27013	62.609	62.478	62.748	0.072701					10	8	2	0	0	0	0.23216	1	14015	14015		14.838	0	1	59606	+		20584	11132	13583	13725	28024	28024					0.01703670812139535
TFVAGYIAGVF	11	Unmodified	_TFVAGYIAGVF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8058471679688	2	572.8055	1143.59645	0.22462	0.00012866	-0.2415	-0.00013833	-0.016877	-9.6672E-06	572.8055552840556	102.73	0.36566	102.73	102.71	103.07	0					58	25	4	0	0	0	0.38057	1	26412	26412		8.7454	0.58988	1	169690			20585	821	13584	13726	28025	28025					0.030392001371410515
TFVAGYIAGVF	11	Unmodified	_TFVAGYIAGVF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8054809570312	2	572.8055	1143.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.15	1	103.15	102.65	103.65	0								0	0	0	0.31731	1	26504	26504		8.7454	0	1				20586	821	13584	13726	28026	28026					0.030392001371410515
TFVAGYIAGVF	11	Unmodified	_TFVAGYIAGVF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.8055	1143.59645	0.38469	0.00022036	-0.41698	-0.00023885	-0.032283	-1.8492E-05	572.8053492109342	103	0.1205	103.05	103.03	103.15	0.040916	0.15848	-0.00018402	NaN	8.7454	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49955			20587	821	13584	13726							0.030392001371410515
TFVIYCGLRF	10	Unmodified	_TFVIYCGLRF_					0	0	0		nc|ENSG00000168065|Q9NSA0-2|SLC22A11;ENSG00000168065|ENST00000301891|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2284851074219	3	406.882843	1217.6267	0.43954	0.00017884	-3.3703	-0.0013713	-2.9308	-0.0011925	406.88127697400535	53.19	0.37288	53.19	53.06	53.433	0					21	15	2	0	0	0	0.31802	1	11309	11309		3.8763	2.1341	1	33803			20588	4260	13585	13727	28027	28027					0.026592355306547688
TFYDGDVPI	9	Unmodified	_TFYDGDVPI_					0	0	0			REV__nc|ENSG00000128918|O94788-4|ALDH1A2	REV__nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7433471679688	2	513.742565	1025.47058	0.77519	0.00039825	-0.49146	-0.00025249	0.28373	0.00014576	513.7422816673544	81.846	0.43523	81.846	81.601	82.036	0					32	14	3	0	0	0	0.22344	1	20052	20052		15.847	1.0089	1	180660	+		20589	9027	13586	13728	28028	28028					-0.04113931438951113
TFYERGVSW	9	Unmodified	_TFYERGVSW_					0	0	0		ENST00000570096.1_1_20:37590616-37590736:-|nuORF	ENST00000570096.1_1_20:37590616-37590736:-|nuORF	ENST00000570096.1_1_20:37590616-37590736:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7750244140625	2	572.774731	1143.53491	0.37766	0.00021631	0.10262	5.8778E-05	0.48028	0.00027509	572.7747461134016	55.528	0.77803	55.593	55.314	56.092	0.065128					84	28	4	0	0	0	0.047633	2	11829	11829;11875		43.858	5.8843	1	2926100			20590	7191	13587	13729	28029;28030	28029					-0.031117315621258967
TFYLHIGY	8	Unmodified	_TFYLHIGY_					0	0	0			REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7995300292969	2	507.258185	1012.50182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.47	1	107.47	106.97	107.97	0								0	0	0	0.38822	1	27740	27740		0.79363	0	1		+		20591	12137	13588	13730	28031	28031					-0.0039331361417680455
TFYNLLQFV	9	Unmodified	_TFYNLLQFV_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.8056640625	2	572.8055	1143.59645	0.39319	0.00022522	-0.045503	-2.6065E-05	0.34769	0.00019916	572.8053973063437	102.66	0.37244	102.7	102.64	103.02	0.040916					56	30	2	0	0	0	0.25458	1	26191	26191		5.7319	0	1	118510	+		20592	8152	13589	13731	28032	28032					0.03039200137118314
TGAFQQADF	9	Unmodified	_TGAFQQADF_					0	0	0			REV__ENSG00000176919|ENST00000371634|C8G	REV__ENSG00000176919|ENST00000371634|C8G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7249450683594	2	492.724707	983.43486	0.40921	0.00020163	-0.11335	-5.585E-05	0.29586	0.00014578	492.72458461874334	47.056	0.85853	47.056	46.813	47.672	0					57	29	3	0	0	0	0.15282	2	9406	9406;9452		24.021	2.2739	1	177670	+		20593	10416	13590	13732	28033;28034	28033					-0.057519688959587256
TGAFQQADF	9	Unmodified	_TGAFQQADF_					0	0	0			REV__ENSG00000176919|ENST00000371634|C8G	REV__ENSG00000176919|ENST00000371634|C8G	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7046203613281	2	492.724707	983.43486	0.40921	0.00020163	-0.11335	-5.585E-05	0.29586	0.00014578	492.72458461874334	47.056	0.85853	47.056	46.813	47.672	0					57	29	3	0	0	0	0.1789	1	9399	9399		29.082	5.061	1	177670	+		20594	10416	13590	13732	28035	28035					-0.057519688959587256
TGAFQQADF	9	Unmodified	_TGAFQQADF_					0	0	0			REV__ENSG00000176919|ENST00000371634|C8G	REV__ENSG00000176919|ENST00000371634|C8G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.72479248046875	2	492.724707	983.43486	0.34741	0.00017118	0.063957	3.1513E-05	0.41137	0.00020269	492.7246172784504	46.981	0.51322	47.064	46.835	47.348	0.083096					42	19	3	0	0	0	0.083124	1	9259	9259		36.127	1.7253	1	146270	+		20595	10416	13590	13732	28036	28036					-0.057519688959587256
TGAFQQADF	9	Unmodified	_TGAFQQADF_					0	0	0			REV__ENSG00000176919|ENST00000371634|C8G	REV__ENSG00000176919|ENST00000371634|C8G	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.70465087890625	2	492.724707	983.43486	0.34741	0.00017118	0.063957	3.1513E-05	0.41137	0.00020269	492.7246172784504	46.981	0.51322	47.064	46.835	47.348	0.083096					42	19	3	0	0	0	0.22912	1	9233	9233		18.146	4.2403	1	146270	+		20596	10416	13590	13732	28037	28037					-0.057519688959587256
TGAIPAGGWQ	10	Unmodified	_TGAIPAGGWQ_					0	0	0		ENST00000541990.5_1_1:155175040-155177685:-|nuORF	ENST00000541990.5_1_1:155175040-155177685:-|nuORF	ENST00000541990.5_1_1:155175040-155177685:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2590026855469	2	479.243067	956.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.943	1	22.943	22.443	23.443	0								0	0	0	0.33215	1	2273	2273		9.3831	0.63772	1				20597	7066	13591	13733	28038	28038					-0.008396722793804656
TGAKLKHDA	9	Unmodified	_TGAKLKHDA_					0	0	0			REV__CON__Q3KUS7	REV__CON__Q3KUS7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7638244628906	2	470.764166	939.513779	-0.35101	-0.00016524	-0.32828	-0.00015454	-0.67929	-0.00031979	470.7642061027129	30.078	0.41662	30.154	30.031	30.447	0.075403					38	26	2	0	0	0	0.32614	1	4199	4199		3.2813	0	1	33495	+	+	20598	7846	13592	13734	28039	28039					0.04160303128981013
TGDFHQAEVW	10	Unmodified	_TGDFHQAEVW_					0	0	0		ENST00000464356.6_2_1:156452388-156453148:-|nuORF	ENST00000464356.6_2_1:156452388-156453148:-|nuORF	ENST00000464356.6_2_1:156452388-156453148:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2677612304688	2	595.26727	1188.51999	0.21464	0.00012777	0.72348	0.00043066	0.93811	0.00055843	595.2674205985945	57.589	0.4122	57.657	57.413	57.825	0.068375					33	14	3	0	0	0	0.34138	1	12481	12481		18.146	1.0335	1	192530			20599	6626	13593	13735	28040	28040					-0.06673223430152575
TGDKPNQNL	9	Unmodified	_TGDKPNQNL_					0	0	0			REV__ENSG00000123607|ENST00000243344|TTC21B	REV__ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7485046386719	2	493.748713	985.482873	0.045774	2.2601E-05	-0.089263	-4.4074E-05	-0.043489	-2.1473E-05	493.74858091496066	24.493	0.60059	24.589	24.223	24.824	0.096073					98	53	2	0	0	0	0.3182	1	2599	2599		4.3292	0	1	44755	+		20600	8936	13594	13736	28041	28041					-0.010448949759165771
TGDKPNQNL	9	Unmodified	_TGDKPNQNL_					0	0	0			REV__ENSG00000123607|ENST00000243344|TTC21B	REV__ENSG00000123607|ENST00000243344|TTC21B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.748713	985.482873	0.045774	2.2601E-05	-0.089263	-4.4074E-05	-0.043489	-2.1473E-05	493.74858091496066	24.493	0.60059	24.589	24.223	24.824	0.096073	-0.092575	-7.5035E-05	NaN	4.3292	98	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44755	+		20601	8936	13594	13736							-0.010448949759165771
TGECLCYE	8	Unmodified	_TGECLCYE_					0	0	0		ASTN1|p.M489I|1|0.21|ENSG00000152092|chr1:177014847-177014847|C/G|missense_variant;ENST00000473640.1_1_1:176950899-176993727:-|nuORF;ENST00000281881.7_1_1:176905297-177133812:-|nuORF;nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1	ASTN1|p.M489I|1|0.21|ENSG00000152092|chr1:177014847-177014847|C/G|missense_variant	ASTN1|p.M489I|1|0.21|ENSG00000152092|chr1:177014847-177014847|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1719665527344	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.367	1	25.367	24.867	25.867	0								0	0	0	0.38822	1	2954	2954		0.79363	0	1				20602	60	13595	13737	28042	28042					-0.1308575503933298
TGERGLAGLPG	11	Unmodified	_TGERGLAGLPG_					0	0	0		ENST00000488128.6_1_1:32121928-32135507:-|nuORF;nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1	ENST00000488128.6_1_1:32121928-32135507:-|nuORF	ENST00000488128.6_1_1:32121928-32135507:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2794189453125	2	514.28018	1026.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.222	1	22.324	21.824	22.824	0.10178								0	0	0	0.33792	1	1966	1966		1.4819	0	1				20603	949	13596	13738	28043	28043					0.033596708121422125
TGEWSSLNQF	10	Unmodified	_TGEWSSLNQF_					0	0	0			REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENSG00000072858|ENST00000264852|SIDT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.301513671875	2	584.767103	1167.51965	0.64991	0.00038005	-0.048214	-2.8194E-05	0.6017	0.00035185	584.7667515973026	52.528	0.81525	52.595	52.393	53.208	0.067169					69	33	3	0	0	0	0.31496	1	11077	11077		13.906	2.2658	1	461910	+		20604	8172	13597	13739	28044	28044					-0.057406431500112376
TGFEVTVILF	10	Unmodified	_TGFEVTVILF_					0	0	0		ENST00000526149.1_1_16:66586582-66592272:+|nuORF;nc|ENSG00000254788|Q9UBR5-5|CKLF;nc|ENSG00000254788|Q9UBR5-4|CKLF;ENSG00000217555|ENST00000264001|CKLF	ENST00000526149.1_1_16:66586582-66592272:+|nuORF	ENST00000526149.1_1_16:66586582-66592272:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8343505859375	2	563.313158	1124.61176	0.28481	0.00016043	0.2177	0.00012263	0.50251	0.00028307	563.3132240008581	95.184	0.20517	95.184	95.074	95.279	0					15	9	2	0	0	0	0.28878	1	24105	24105		25.399	0	1	45096			20605	5583	13598	13740	28045	28045					0.054440669343193804
TGFWFSVI	8	Unmodified	_TGFWFSVI_					0	0	0			REV__ENST00000524119.1_1_8:124031433-124042893:-|nuORF	REV__ENST00000524119.1_1_8:124031433-124042893:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7468566894531	2	478.747453	955.480354	-0.58071	-0.00027801	-1.0057	-0.00048146	-1.5864	-0.00075948	478.7469145185245	42.115	0.24815	42.205	42.094	42.342	0.089764					14	9	2	0	0	0	0.53423	1	7824	7824		5.2307	0	1	35731	+		20606	9263	13599	13741	28046	28046					0.0008330135708547459
TGICHFFY	8	Unmodified	_TGICHFFY_					0	0	0		PHKA2|p.A1204S|1|0.28|ENSG00000044446|chrX:18893583-18893583|C/A|missense_variant;ENST00000473597.1_1_X:18911605-18913336:-|nuORF;ENST00000469485.5_1_X:18911605-18915466:-|nuORF;ENSG00000044446|ENST00000379942|PHKA2	PHKA2|p.A1204S|1|0.28|ENSG00000044446|chrX:18893583-18893583|C/A|missense_variant	PHKA2|p.A1204S|1|0.28|ENSG00000044446|chrX:18893583-18893583|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7223205566406	2	494.223288	986.432024	-0.072139	-3.5653E-05	-2.666	-0.0013176	-2.7381	-0.0013532	494.22228502176023	25.555	0.38879	25.555	25.365	25.754	0					50	29	2	0	0	0	0.53771	2	2994	2994;3000		2.8892	1.2366	1	35438			20607	551	13600	13742	28047;28048	28047					-0.06173515554462483
TGIFLDLMHLK	11	Unmodified	_TGIFLDLMHLK_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3601684570312	2	644.360116	1286.70568	0.076936	4.9575E-05	0.46806	0.0003016	0.54499	0.00035117	644.3602902403627	91.21	1.7297	91.245	90.555	92.285	0.035446					128	63	3	0	0	0	0.40578	1	22754	22754		2.9952	0	1	431490			20608	5219	13601	13743	28049	28049					0.07379462764970413
TGIFLPILR	9	Unmodified	_TGIFLPILR_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3263549804688	2	515.326402	1028.63825	0.5223	0.00026916	-0.31726	-0.00016349	0.20504	0.00010566	515.3260956676165	74.78	0.35387	74.78	74.635	74.988	0					21	12	2	0	0	0	0.20358	1	17869	17869		18.146	4.2403	1	101820			20609	4165	13602	13744	28050	28050					0.1250780061632213
TGIFLPILR	9	Unmodified	_TGIFLPILR_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3261108398438	2	515.326402	1028.63825	0.43705	0.00022522	0.007856	4.0484E-06	0.44491	0.00022927	515.3262929843615	74.789	0.43527	74.837	74.593	75.028	0.048546					23	15	2	0	0	0	0.20358	1	17700	17700		18.146	4.2403	1	113380			20610	4165	13602	13744	28051	28051					0.1250780061632213
TGIWGHLF	8	Unmodified	_TGIWGHLF_					0	0	0		ENST00000265801.6_2_8:20104052-20104400:-|nuORF	ENST00000265801.6_2_8:20104052-20104400:-|nuORF	ENST00000265801.6_2_8:20104052-20104400:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7445068359375	2	465.745245	929.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.041	1	59.041	58.541	59.541	0								0	0	0	0.38822	1	13063	13063		5.7604	0	1				20611	5901	13603	13745	28052	28052					0.008378369341812686
TGKLRDLNHG	10	Unmodified	_TGKLRDLNHG_					0	0	0			REV__ENST00000573651.5_3_17:7227525-7227791:-|nuORF	REV__ENST00000573651.5_3_17:7227525-7227791:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8031616210938	2	555.804354	1109.59415	-0.063749	-3.5432E-05	-0.037999	-2.112E-05	-0.10175	-5.6552E-05	555.8041694831028	24.154	0.27158	24.154	24.057	24.329	0					45	27	2	0	0	0	0.4753	1	2635	2635		0	0	1	21643	+		20612	12532	13604	13746	28053	28053					0.04374164451996876
TGLEGNTLYH	10	Unmodified	_TGLEGNTLYH_					0	0	0		nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.755126953125	2	552.769645	1103.52474	-0.0089812	-4.9645E-06	-0.23366	-0.00012916	-0.24264	-0.00013413	552.7695414998977	43.536	1.5052	43.536	42.764	44.269	0					190	52	4	0	0	0	0.46656	1	8157	8157		1.6526	0	1	524960			20613	3423	13605	13747	28054	28054					-0.022883392873836783
TGLENSKAM	9	Unmodified	_TGLENSKAM_					0	0	0		ENST00000527494.5_1_11:17899771-18022052:-|nuORF;nc|ENSG00000129158|Q9UGK8-2|SERGEF;ENSG00000129158|ENST00000265965|SERGEF	ENST00000527494.5_1_11:17899771-18022052:-|nuORF	ENST00000527494.5_1_11:17899771-18022052:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.73406982421875	2	475.734217	949.453881	-0.40034	-0.00019045	0.12217	5.8122E-05	-0.27816	-0.00013233	475.73422806216695	28.699	0.65253	28.699	28.488	29.141	0					72	33	4	0	0	0	0.29576	1	3953	3953		7.2892	1.5574	1	160610			20614	2421	13606	13748	28055	28055					-0.022867555965490283
TGLQGFLVF	9	Unmodified	_TGLQGFLVF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2738342285156	2	491.273835	980.533118	0.53994	0.00026526	-0.25155	-0.00012358	0.28839	0.00014168	491.2736221356024	93.422	0.35831	93.422	93.241	93.599	0					26	14	2	0	0	0	0.2094	1	23537	23537		22.736	3.2973	1	138220			20615	2217	13607	13749	28056	28056					0.04207259419899856
TGLQGFLVF	9	Unmodified	_TGLQGFLVF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.27398681640625	2	491.273835	980.533118	0.45739	0.00022471	-0.2947	-0.00014478	0.1627	7.993E-05	491.2734995723712	93.375	0.36492	93.412	93.271	93.635	0.037369					30	14	3	0	0	0	0.27929	1	23430	23430		9.3831	0.035688	1	106580			20616	2217	13607	13749	28057	28057					0.04207259419899856
TGMCYPLR	8	Unmodified	_TGMCYPLR_					0	0	0		ADAMTS14|p.H377Y|1|0.1|ENSG00000138316|chr10:70732280-70732280|C/T|missense_variant	ADAMTS14|p.H377Y|1|0.1|ENSG00000138316|chr10:70732280-70732280|C/T|missense_variant	ADAMTS14|p.H377Y|1|0.1|ENSG00000138316|chr10:70732280-70732280|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7218017578125	2	470.722598	939.430643	-0.14464	-6.8083E-05	-0.8077	-0.0003802	-0.95234	-0.00044829	470.7220540318906	34.369	0.29908	34.369	34.206	34.505	0					23	12	2	0	0	0	0.54097	1	5599	5599		0.69038	0	1	34154			20617	13	13608	13750	28058	28058					-0.04149472914878061
TGMCYPLR	8	Unmodified	_TGMCYPLR_					0	0	0		ADAMTS14|p.H377Y|1|0.1|ENSG00000138316|chr10:70732280-70732280|C/T|missense_variant	ADAMTS14|p.H377Y|1|0.1|ENSG00000138316|chr10:70732280-70732280|C/T|missense_variant	ADAMTS14|p.H377Y|1|0.1|ENSG00000138316|chr10:70732280-70732280|C/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	470.722598	939.430643	-0.19763	-9.3029E-05	-0.97677	-0.00045979	-1.1744	-0.00055282	470.7221328653503	34.309	0.29671	34.386	34.221	34.518	0.076244	0.008468	-6.9514E-05	NaN	0.69038	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21928			20618	13	13608	13750							-0.04149472914878061
TGPCFSFP	8	Unmodified	_TGPCFSFP_					0	0	0		ENST00000295685.14_1_2:219082131-219082197:+|nuORF	ENST00000295685.14_1_2:219082131-219082197:+|nuORF	ENST00000295685.14_1_2:219082131-219082197:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	428.1888122558594	2	428.188914	854.363275	0.034977	1.4977E-05	-0.18236	-7.8086E-05	-0.14739	-6.311E-05	428.18874584250386	87.179	0.55903	87.206	86.999	87.558	0.027573					55	22	3	0	0	0	0.53345	1	21495	21495		5.7604	3.1829	1	901340			20619	5957	13609	13751	28059	28059					-0.0697317985417385
TGPGPSLLTL	10	Unmodified	_TGPGPSLLTL_					0	0	0			REV__ENST00000279249.2_1_11:65082389-65088053:+|nuORF	REV__ENST00000279249.2_1_11:65082389-65088053:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.27630615234375	2	478.276575	954.538597	-0.019298	-9.2298E-06	0.11257	5.3839E-05	0.093271	4.4609E-05	478.2765658565647	68.86	0.91835	68.922	68.531	69.449	0.062126					95	34	4	0	0	0	0.25276	1	15843	15843		27.629	0	1	1361500	+		20620	11292	13610	13752	28060	28060					0.0595093821170849
TGPPLELDL	9	Unmodified	_TGPPLELDL_					0	0	0			REV__ENSG00000187866|ENST00000394264|PABIR1	REV__ENSG00000187866|ENST00000394264|PABIR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2620544433594	2	477.760758	953.506963	0.14702	7.0242E-05	0.20022	9.5656E-05	0.34724	0.0001659	477.7607293337322	102.15	0.83145	102.19	101.98	102.81	0.042656					75	64	2	0	0	0	0.30005	2	26027	26027;26043		6.7232	2.7788	1	189050	+		20621	10751	13611	13753	28061;28062	28061					0.028349454577551114
TGPTRFFLF	9	Unmodified	_TGPTRFFLF_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2926025390625	2	543.292559	1084.57057	0.24208	0.00013152	0.11939	6.4862E-05	0.36147	0.00019638	543.2925101116899	73.992	0.8647	73.992	73.69	74.555	0					71	31	3	0	0	0	0.081383	1	17601	17601		36.506	4.2007	1	942840			20622	451	13612	13754	28063	28063					0.03166350685501129
TGPTRFFLF	9	Unmodified	_TGPTRFFLF_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2926025390625	2	543.292559	1084.57057	0.4722	0.00025654	-0.10879	-5.9105E-05	0.36341	0.00019744	543.2923296005149	73.922	0.86964	73.97	73.697	74.567	0.048546					66	31	3	0	0	0	0.026809	2	17461	17415;17461		53.404	13.447	1	720920			20623	451	13612	13754	28064;28065	28065					0.03166350685501129
TGRKGLTER	9	Unmodified	_TGRKGLTER_					0	0	0		POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;nc|ENSG00000051341|O75417-2|POLQ;POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2933654785156	2	509.293622	1016.57269	-0.42159	-0.00021471	-0.13411	-6.8302E-05	-0.5557	-0.00028302	509.293486501372	14.727	0.1364	14.727	14.652	14.788	0					28	16	3	0	0	0	0.33849	1	420	420		1.6526	0	1	17707			20624	7671	13613	13755	28066	28066					0.06506779423318676
TGSAESTLPK	10	Unmodified	_TGSAESTLPK_					0	0	0		TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7593078613281	2	495.758746	989.50294	-0.046425	-2.3015E-05	-0.065446	-3.2445E-05	-0.11187	-5.5461E-05	495.75871084668614	26.01	0.34144	26.01	25.836	26.177	0					44	26	2	0	0	0	0.46827	1	3119	3119		1.3295	0	1	49682			20625	1882	13614	13756	28067	28067					0.007768559640453532
TGTEAHVAE	9	Unmodified	_TGTEAHVAE_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.71429443359375	2	457.714339	913.414125	-0.034801	-1.5929E-05	-0.23402	-0.00010711	-0.26882	-0.00012304	457.7141328702145	28.044	0.50517	28.044	27.845	28.35	0					47	27	2	0	0	0	0.23216	2	3757	3757;3779		14.838	4.0143	1	68744			20626	4405	13615	13757	28068;28069	28068					-0.04604559275617248
TGTEAHVAE	9	Unmodified	_TGTEAHVAE_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.7138977050781	2	457.714339	913.414125	-0.22497	-0.00010297	0.027303	1.2497E-05	-0.19767	-9.0476E-05	457.7142849993032	27.828	0.54692	27.91	27.709	28.256	0.082134					74	32	3	0	0	0	0.26684	2	3523	3523;3608		10.824	3.5347	1	60552			20627	4405	13615	13757	28070;28071	28070					-0.04604559275617248
TGTPRNNASPA	11	Unmodified	_TGTPRNNASPA_					0	0	0		ENST00000487544.1_1_X:43703754-43741674:-|nuORF	ENST00000487544.1_1_X:43703754-43741674:-|nuORF	ENST00000487544.1_1_X:43703754-43741674:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.28515625	2	543.270344	1084.52613	0.33113	0.00017989	-0.72637	-0.00039462	-0.39524	-0.00021472	543.2679169525818	56.135	0.62256	56.135	55.948	56.57	0					64	22	4	0	0	0	0.35693	1	12210	12210		11.495	0.6952	1	718700			20628	6790	13616	13758	28072	28072					-0.0127470519862527
TGTYVVIDI	9	Unmodified	_TGTYVVIDI_					0	0	0		ENST00000510501.1_1_8:59337214-59337583:-|nuORF	ENST00000510501.1_1_8:59337214-59337583:-|nuORF	ENST00000510501.1_1_8:59337214-59337583:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.7688903808594	2	490.768583	979.522613	0.29887	0.00014667	-0.18903	-9.2768E-05	0.10984	5.3906E-05	490.7686020334014	101.72	0.16594	101.72	101.6	101.76	0					13	11	2	0	0	0	0.20358	1	26068	26068		18.146	7.3224	1	40057			20629	6912	13617	13759	28073	28073					0.03203231974816845
TGVILLRLDRL	11	Unmodified	_TGVILLRLDRL_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.9061279296875	2	634.906079	1267.79761	-0.16902	-0.00010731	-0.34141	-0.00021676	-0.51043	-0.00032408	634.9058914572896	107.97	0.1143	107.97	107.91	108.02	0					25	14	2	0	0	0	0.39378	1	27847	27847		5.7319	2.4505	1	7440100			20630	4115	13618	13760	28074	28074					0.17441889173642267
TGVILLRLDRL	11	Unmodified	_TGVILLRLDRL_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.9059448242188	2	634.906079	1267.79761	-0.16816	-0.00010677	0.20815	0.00013215	0.039983	2.5386E-05	635.4076125712412	108.03	0.080391	108.03	108.01	108.09	0					28	11	3	0	0	0	0.39378	1	27873	27873		5.7319	2.4505	1	9736100			20631	4115	13618	13760	28075	28075					0.17441889173642267
TGVILLRLDRL	11	Unmodified	_TGVILLRLDRL_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9054565429688	2	634.906079	1267.79761	0.24543	0.00015582	-0.94373	-0.00059918	-0.6983	-0.00044336	634.905500327184	107.99	0.16086	108.01	107.94	108.1	0.022224					36	23	2	0	0	0	0.39378	2	27641	27641;27650		5.7319	2.4505	1	7936500			20632	4115	13618	13760	28076;28077	28076					0.17441889173642267
TGVILLRLDRL	11	Unmodified	_TGVILLRLDRL_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9081420898438	2	634.906079	1267.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.28	1	108.31	107.81	108.81	0.022224								0	0	0	0.33362	1	27719	27719		2.9952	1.5133	1				20633	4115	13618	13760	28078	28078					0.17441889173642267
TGVILLRLDRL	11	Unmodified	_TGVILLRLDRL_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.9053344726562	2	634.906079	1267.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.39	1	108.41	107.91	108.91	0.022224								0	0	0	0.32586	1	27741	27741		5.7319	4.25	1				20634	4115	13618	13760	28079	28079					0.17441889173642267
TGVILLRLDRL	11	Unmodified	_TGVILLRLDRL_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	634.906079	1267.79761	0.24468	0.00015535	0.15891	0.00010089	0.40359	0.00025624	634.9066336567561	108.11	0.10132	108.13	108.07	108.17	0.022224	0.08338	0.00031145	NaN	5.7319	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5479000			20635	4115	13618	13760							0.17441889173642267
TGWSVLYTITF	11	Unmodified	_TGWSVLYTITF_					0	0	0		ENST00000242465.3_1_10:70864296-70864419:+|nuORF	ENST00000242465.3_1_10:70864296-70864419:+|nuORF	ENST00000242465.3_1_10:70864296-70864419:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3351440429688	2	644.334621	1286.65469	0.37748	0.00024322	-0.53928	-0.00034748	-0.1618	-0.00010425	644.3342599813943	100.43	0.38798	100.47	100.36	100.74	0.042831					33	22	2	0	0	0	0.39744	1	25586	25586		4.897	0	1	86004			20636	5825	13619	13761	28080	28080					0.022828369917533564
TGYNYNDAL	9	Unmodified	_TGYNYNDAL_					0	0	0			REV__PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	REV__PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7293701171875	2	515.727446	1029.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.174	1	35.252	34.752	35.752	0.078827								0	0	0	0.26747	1	5718	5718		5.7319	0.50118	1		+		20637	8237	13620	13762	28081	28081					-0.07320290104144078
THGETHGY	8	Unmodified	_THGETHGY_					0	0	0			REV__WDHD1|p.K269Lfs*35|1|0.08|ENSG00000198554|chr14:55000641-55000642|-/TATAGTAGATGCTGAGT|frameshift_variant	REV__WDHD1|p.K269Lfs*35|1|0.08|ENSG00000198554|chr14:55000641-55000642|-/TATAGTAGATGCTGAGT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.18243408203125	2	451.193574	900.372594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.133	1	39.22	38.72	39.72	0.08688								0	0	0	0.38822	1	6905	6905		0.79363	0	1		+		20638	10901	13621	13763	28082	28082					-0.08157695244278784
THGETYRCF	9	Unmodified	_THGETYRCF_					0	0	0		nc|ENSG00000189013|Q99706-6|KIR2DL4;nc|ENSG00000189013|Q99706-5|KIR2DL4;nc|ENSG00000189013|Q99706-4|KIR2DL4;ENSG00000189013|ENST00000345540|KIR2DL4;nc|ENSG00000189013|Q99706-2|KIR2DL4;nc|ENSG00000189013|Q99706|KIR2DL4	nc|ENSG00000189013|Q99706-6|KIR2DL4	nc|ENSG00000189013|Q99706-6|KIR2DL4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7410278320312	2	557.242741	1112.47093	0.6232	0.00034728	3.1734	0.0017683	3.7966	0.0021156	557.2435119463534	83.266	0.34373	83.266	83.141	83.485	0					21	11	2	0	0	0	0.24366	1	20463	20463		13.042	4.4492	1	69032			20639	5185	13622	13764	28083	28083					-0.0808083499073291
THGETYRCF	9	Unmodified	_THGETYRCF_					0	0	0		nc|ENSG00000189013|Q99706-6|KIR2DL4;nc|ENSG00000189013|Q99706-5|KIR2DL4;nc|ENSG00000189013|Q99706-4|KIR2DL4;ENSG00000189013|ENST00000345540|KIR2DL4;nc|ENSG00000189013|Q99706-2|KIR2DL4;nc|ENSG00000189013|Q99706|KIR2DL4	nc|ENSG00000189013|Q99706-6|KIR2DL4	nc|ENSG00000189013|Q99706-6|KIR2DL4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	557.242741	1112.47093	0.50487	0.00028134	4.725	0.002633	5.2299	0.0029143	557.2447630170997	83.403	0.3017	83.425	83.225	83.527	0.021744	0.079327	0.00067972	NaN	13.042	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111560			20640	5185	13622	13764							-0.0808083499073291
THGRYHRQGG	10	Unmodified	_THGRYHRQGG_					0	0	0			REV__ENSG00000149499|ENST00000394773|EML3	REV__ENSG00000149499|ENST00000394773|EML3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.790283203125	2	584.78957	1167.56459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.361	1	18.361	17.861	18.861	0								0	0	0	0.34018	1	1107	1107		0	0	1		+		20641	7912	13623	13765	28084	28084					-0.012493547734720778
THGRYHRQGG	10	Unmodified	_THGRYHRQGG_					0	0	0			REV__ENSG00000149499|ENST00000394773|EML3	REV__ENSG00000149499|ENST00000394773|EML3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.790283203125	2	584.78957	1167.56459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.311	1	19.311	18.811	19.811	0								0	0	0	0.34018	1	1328	1328		0	0	1		+		20642	7912	13623	13765	28085	28085					-0.012493547734720778
THGRYHRQGG	10	Unmodified	_THGRYHRQGG_					0	0	0			REV__ENSG00000149499|ENST00000394773|EML3	REV__ENSG00000149499|ENST00000394773|EML3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7890014648438	2	584.78957	1167.56459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.313	1	20.313	19.813	20.813	0								0	0	0	0.34018	1	1577	1577		0	0	1		+		20643	7912	13623	13765	28086	28086					-0.012493547734720778
THIFVDSI	8	Unmodified	_THIFVDSI_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7776184082031	2	466.247818	930.481082	0.36509	0.00017022	-0.33289	-0.00015521	0.032195	1.5011E-05	466.2476310447764	74.544	0.37234	74.544	74.37	74.743	0					19	13	2	0	0	0	0.3576	1	17781	17781		4.756	2.6963	1	94060	+		20644	12832	13624	13766	28087	28087					0.013060960061352489
THIRHHRF	8	Unmodified	_THIRHHRF_					0	0	0			REV__ENSG00000245680|ENST00000532828|ZNF585B	REV__ENSG00000245680|ENST00000532828|ZNF585B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3003540039062	2	552.302116	1102.58968	0.23178	0.00012801	-2.4478	-0.0013519	-2.216	-0.0012239	552.3003975905425	21.642	0.14251	21.744	21.676	21.819	0.10178					19	14	2	0	0	0	0.54097	1	1817	1817		0.69038	0	1	11960	+		20645	11073	13625	13767	28088	28088					0.042487448198016864
THKCRMSRW	9	Unmodified	_THKCRMSRW_					0	0	0			REV__nc|ENSG00000234769|A8MWX3|WASH4P	REV__nc|ENSG00000234769|A8MWX3|WASH4P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.7950439453125	2	602.794952	1203.57535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.285	1	23.387	22.887	23.887	0.10178								0	0	0	0.29525	1	2250	2250		0	0	1		+		20646	10564	13626	13768	28089	28089					-0.01829411714993512
THKFHRKCI	9	Unmodified	_THKFHRKCI_					0	0	0		ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.32177734375	2	585.32166	1168.62877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.66	1	117.67	117.17	118.17	0.013062								0	0	0	0.29525	1	29731	29731		0	0	1				20647	3870	13627	13769	28090	28090					0.05119709059158595
THLALTVKT	9	Unmodified	_THLALTVKT_					0	0	0		nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;ENST00000514179.5_1_5:130808426-130834192:-|nuORF	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.29913330078125	2	492.297842	982.581131	-0.013123	-6.4603E-06	3.0241	0.0014887	3.0109	0.0014823	492.29920032216756	108.59	0.097023	108.59	108.54	108.64	0					19	13	2	0	0	0	0.25281	1	27999	27999		6.7232	2.7788	1	908300			20648	3710	13628	13770	28091	28091					0.08914333339930636
THLESAVLR	9	Unmodified	_THLESAVLR_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2904663085938	2	513.290548	1024.56654	0.030627	1.572E-05	-0.0034645	-1.7783E-06	0.027162	1.3942E-05	513.2904645037935	33.518	0.90491	33.592	33.401	34.305	0.074322					79	36	4	0	0	0	0.15282	1	5206	5206		24.021	0	1	329340	+		20649	8707	13629	13771	28092	28092					0.055242611917947215
THLRTLIHWL	10	Unmodified	_THLRTLIHWL_					0	0	0		nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1	nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1	nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3786010742188	2	645.377489	1288.74043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.831	1	61.831	61.331	62.331	0								0	0	0	0.33892	1	13917	13917		1.4819	0	1				20650	7587	13630	13772	28093	28093					0.10760466687929693
THSSFFVF	8	Unmodified	_THSSFFVF_					0	0	0			REV__ENSG00000065457|ENST00000564657|ADAT1	REV__ENSG00000065457|ENST00000564657|ADAT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2330627441406	2	486.23471	970.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.073	1	35.152	34.652	35.652	0.078827								0	0	0	0.38822	1	5689	5689		2.5775	0.27475	1		+		20651	8101	13631	13773	28094	28094					-0.03154173165319207
THVAVPET	8	Unmodified	_THVAVPET_					0	0	0		ATP11B|p.W311Lfs*4|1|0.21|ENSG00000058063|chr3:182857956-182857957|-/T|frameshift_variant;ATP11B-TFRC|1|fusion;ENSG00000058063|ENST00000323116|ATP11B	ATP11B|p.W311Lfs*4|1|0.21|ENSG00000058063|chr3:182857956-182857957|-/T|frameshift_variant	ATP11B|p.W311Lfs*4|1|0.21|ENSG00000058063|chr3:182857956-182857957|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.2251281738281	2	427.224342	852.434132	0.62564	0.00026729	-2.1625	-0.00092386	-1.5368	-0.00065658	427.2233431047548	99.809	0.53358	99.809	99.485	100.02	0					39	28	2	0	0	0	0.3576	1	25465	25465		2.0598	0	1	571740			20652	67	13632	13774	28095	28095					0.0020123645499552367
THVAVPET	8	Unmodified	_THVAVPET_					0	0	0		ATP11B|p.W311Lfs*4|1|0.21|ENSG00000058063|chr3:182857956-182857957|-/T|frameshift_variant;ATP11B-TFRC|1|fusion;ENSG00000058063|ENST00000323116|ATP11B	ATP11B|p.W311Lfs*4|1|0.21|ENSG00000058063|chr3:182857956-182857957|-/T|frameshift_variant	ATP11B|p.W311Lfs*4|1|0.21|ENSG00000058063|chr3:182857956-182857957|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.2232971191406	2	427.224342	852.434132	0.34978	0.00014943	-1.6216	-0.00069281	-1.2719	-0.00054337	427.22354872019287	99.74	0.50067	99.783	99.553	100.05	0.042839					59	33	2	0	0	0	0.53494	1	25333	25333		4.756	2.4533	1	554190			20653	67	13632	13774	28096	28096					0.0020123645499552367
THVTRQSPKG	10	Unmodified	_THVTRQSPKG_					0	0	0			REV__DAB2|p.N396Kfs*31|1|0.08|ENSG00000153071|chr5:39382771-39382772|-/T|frameshift_variant	REV__DAB2|p.N396Kfs*31|1|0.08|ENSG00000153071|chr5:39382771-39382772|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.803955078125	2	555.804354	1109.59415	-0.063749	-3.5432E-05	-0.037999	-2.112E-05	-0.10175	-5.6552E-05	555.8041694831028	24.154	0.27158	24.154	24.057	24.329	0					45	27	2	0	0	0	0.46083	1	2611	2611		2.7352	0	1	21643	+		20654	7869	13633	13775	28097	28097					0.04374164452019613
TIADSATSPK	10	Unmodified	_TIADSATSPK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1;PLEKHG1|p.L159Ffs*29|1|0.13|ENSG00000120278|chr6:150768699-150768699|C/-|frameshift_variant	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.75823974609375	2	495.758746	989.50294	-0.046425	-2.3015E-05	-0.065446	-3.2445E-05	-0.11187	-5.5461E-05	495.75871084668614	26.01	0.34144	26.01	25.836	26.177	0					44	26	2	0	0	0	0.45945	1	3112	3112		2.9952	0.10602	1	49682			20655	2114	13634	13776	28098	28098					0.007768559640453532
TIAEIKNLF	9	Unmodified	_TIAEIKNLF_					0	0	0		ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000594807.5_1_19:14640508-14674579:+|nuORF	ENST00000594807.5_1_19:14640508-14674579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.805419921875	2	524.8055	1047.59645	0.69185	0.00036309	-0.30186	-0.00015842	0.38999	0.00020467	524.8053541429603	65.935	0.99147	65.935	65.616	66.607	0					56	35	2	0	0	0	0.017478	2	15172	15118;15172		60.074	23.568	1	249390			20656	1133	13635	13777	28099;28100	28100					0.07455200137110296
TIAEIKNLF	9	Unmodified	_TIAEIKNLF_					0	0	0		ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000594807.5_1_19:14640508-14674579:+|nuORF	ENST00000594807.5_1_19:14640508-14674579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8054809570312	2	524.8055	1047.59645	0.43583	0.00022873	-0.28497	-0.00014955	0.15086	7.9172E-05	524.8052688882602	65.985	0.93617	66.052	65.597	66.534	0.066872					52	35	2	0	0	0	0.03918	3	15017	14963;15017;15120		45.7	20.3	1	184960			20657	1133	13635	13777	28101;28102;28103	28102					0.07455200137110296
TIAFFHYAF	9	Unmodified	_TIAFFHYAF_					0	0	0			REV__nc|ENSG00000273540|Q96MI9|AGBL1	REV__nc|ENSG00000273540|Q96MI9|AGBL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7631225585938	2	558.779285	1115.54402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.246	1	66.246	65.746	66.746	0								0	0	0	0.23452	1	15265	15265		12.532	1.7076	1		+		20658	12911	13636	13778	28104	28104					-0.009133382058280404
TICVLYTTLL	10	Unmodified	_TICVLYTTLL_					0	0	0		nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.32275390625	2	570.322668	1138.63078	0.42727	0.00024368	-0.69071	-0.00039392	-0.26344	-0.00015024	570.3223370426219	68.933	0.8384	68.933	68.377	69.215	0					82	30	3	0	0	0	0.28643	1	16105	16105		24.021	4.7636	1	318430			20659	7633	13637	13779	28105	28105					0.06701280233733087
TIDEHDAII	9	Unmodified	_TIDEHDAII_					0	0	0		nc|ENSG00000152558|Q8N131-2|TMEM123;ENSG00000152558|ENST00000398136|TMEM123	nc|ENSG00000152558|Q8N131-2|TMEM123	nc|ENSG00000152558|Q8N131-2|TMEM123	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7586669921875	2	513.758746	1025.50294	0.42314	0.00021739	-0.53858	-0.0002767	-0.11544	-5.9308E-05	513.7584394174938	47.634	0.38446	47.634	47.467	47.852	0					23	12	2	0	0	0	0.22344	1	9591	9591		15.847	1.2655	1	95865			20660	3498	13638	13780	28106	28106					-0.008791440359573244
TIESESYWAS	10	Unmodified	_TIESESYWAS_					0	0	0			REV__nc|ENSG00000136536|Q9H992-2|MARCHF7	REV__nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7576904296875	2	586.758943	1171.50333	0.51432	0.00030178	-0.30198	-0.00017719	0.21235	0.0001246	586.7587081744774	35.67	0.42385	35.749	35.539	35.963	0.078831					21	15	2	0	0	0	0.46746	1	5867	5867		1.4819	0	1	37365	+		20661	9246	13639	13781	28107	28107					-0.07555769106738808
TIFNHFRR	8	Unmodified	_TIFNHFRR_					0	0	0			REV__sp|P03187|TRX1_EBVB9Triplexcapsidprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX1PE=1SV=1	REV__sp|P03187|TRX1_EBVB9Triplexcapsidprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7981567382812	2	545.798875	1089.5832	-0.36242	-0.00019781	0.35509	0.00019381	-0.0073236	-3.9972E-06	545.7990708662352	17.165	0.3299	17.165	17.03	17.36	0					95	40	3	0	0	0	0.54097	1	888	888		0.69038	0	1	38594	+		20662	12995	13640	13782	28108	28108					0.04198806868407701
TIHFPTDYPF	10	Unmodified	_TIHFPTDYPF_					0	0	0		ENST00000503742.5_1_4:103723687-103747665:-|nuORF;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;ENST00000440899.5_1_7:43978041-43988321:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3	ENST00000503742.5_1_4:103723687-103747665:-|nuORF	ENST00000503742.5_1_4:103723687-103747665:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.2977905273438	2	619.298039	1236.58152	0.10497	6.501E-05	0.75672	0.00046864	0.8617	0.00053365	619.2982290022306	98.59	0.42681	98.59	98.377	98.804	0					58	24	3	0	0	0	0.43972	1	25161	25161		6.7232	0.99131	1	253980			20663	875	13641	13783	28109	28109					-0.027302917308816177
TIHFPTDYPF	10	Unmodified	_TIHFPTDYPF_					0	0	0		ENST00000503742.5_1_4:103723687-103747665:-|nuORF;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;ENST00000440899.5_1_7:43978041-43988321:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3	ENST00000503742.5_1_4:103723687-103747665:-|nuORF	ENST00000503742.5_1_4:103723687-103747665:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.2989501953125	2	619.298039	1236.58152	0.18971	0.00011749	0.30259	0.0001874	0.4923	0.00030488	619.2981965050643	98.473	0.3897	98.515	98.368	98.758	0.041939					35	21	2	0	0	0	0.43972	1	24969	24969		6.7232	0.99131	1	286600			20664	875	13641	13783	28110	28110					-0.027302917308816177
TIHIVKYG	8	Unmodified	_TIHIVKYG_					0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.772216796875	2	465.774003	929.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.86	1	108.86	108.36	109.36	0								0	0	0	0.38822	1	28054	28054		2.5775	0	1		+		20665	9643	13642	13784	28111	28111					0.06586679139752505
TIHPGTSTTMI	11	Unmodified	_TIHPGTSTTMI_					0	0	0		nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2935791015625	2	579.794806	1157.57506	0.63657	0.00036908	0.36013	0.0002088	0.9967	0.00057788	579.7950232209779	100.17	1.4668	100.21	99.845	101.31	0.042839					220	75	5	0	0	0	0.39744	1	25373	25373		4.897	0.70751	1	5221600			20666	4005	13643	13785	28112	28112					0.002574470461013334
TIIAREPDF	9	Unmodified	_TIIAREPDF_					0	0	0		tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8174438476562	2	531.284931	1060.55531	0.83618	0.00044425	4.3509	0.0023116	5.1871	0.0027558	531.2870561709665	81.06	0.38734	81.06	80.959	81.347	0					15	12	2	0	0	0	0.23975	1	19784	19784		14.838	3.198	1	54096			20667	13473	13644	13786	28113	28113					0.02745439097657254
TIIDILTKR	9	Unmodified	_TIIDILTKR_					0	0	0		ENST00000468639.5_1_9:75766818-75774345:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.8400268554688	2	536.839874	1071.66519	0.47502	0.00025501	-0.23761	-0.00012756	0.23741	0.00012745	536.8396679781497	57.315	0.64539	57.315	57.095	57.74	0					53	22	3	0	0	0	0.029591	1	12556	12556		51.415	17.014	1	499300			20668	2708	13645	13787	28114	28114					0.13222864436852433
TIIDILTKR	9	Unmodified	_TIIDILTKR_					0	0	0		ENST00000468639.5_1_9:75766818-75774345:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.839599609375	2	536.839874	1071.66519	0.62926	0.00033781	-0.40025	-0.00021487	0.22901	0.00012294	536.8395417645302	57.249	0.57644	57.318	57.12	57.697	0.068371					56	21	3	0	0	0	0.047066	1	12380	12380		43.982	16.353	1	349610			20669	2708	13645	13787	28115	28115					0.13222864436852433
TIIDLLSDPL	10	Unmodified	_TIIDLLSDPL_					0	0	0			REV__nc|ENSG00000103356|Q5JPH6-2|EARS2	REV__nc|ENSG00000103356|Q5JPH6-2|EARS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.299072265625	2	550.315897	1098.61724	0.34763	0.0001913	0.75004	0.00041276	1.0977	0.00060406	550.3165592079703	36.572	0.23384	36.654	36.556	36.79	0.081715					13	8	2	0	0	0	0.45794	1	6149	6149		3.2813	0	1	19691	+		20670	12768	13646	13788	28116	28116					0.07187745726150752
TIIKKIKLLK	10	Unmodified	_TIIKKIKLLK_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3006591796875	2	599.436484	1196.85842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.704	1	98.746	98.246	99.246	0.041931								0	0	0	0.34018	1	24998	24998		0	0	1				20671	13575	13647	13789	28117	28117					0.2678602622386279
TIIKKIKLLK	10	Unmodified	_TIIKKIKLLK_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8025512695312	2	599.436484	1196.85842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.229	1	99.272	98.772	99.772	0.042839								0	0	0	0.34018	1	25154	25154		0	0	1				20672	13575	13647	13789	28118	28118					0.2678602622386279
TIKAIVQILAQ	11	Unmodified	_TIKAIVQILAQ_					0	0	0			REV__ENSG00000204764|ENST00000523189|RANBP17	REV__ENSG00000204764|ENST00000523189|RANBP17	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3716430664062	2	599.381906	1196.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.345	1	98.387	97.887	98.887	0.041931								0	0	0	0.33436	1	24890	24890		2.7352	1.2533	1		+		20673	10955	13648	13790	28119	28119					0.15875395533748815
TIKDPPVL	8	Unmodified	_TIKDPPVL_					0	0	0		ENST00000515622.1_1_5:126783361-126801299:+|nuORF;ENSG00000145794|ENST00000503335|MEGF10	ENST00000515622.1_1_5:126783361-126801299:+|nuORF	ENST00000515622.1_1_5:126783361-126801299:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.76812744140625	2	441.768386	881.522219	0.60009	0.0002651	-0.61367	-0.0002711	-0.01358	-5.9994E-06	441.7679754702995	99.785	0.87597	99.785	99.433	100.31	0					110	46	3	0	0	0	0.54081	1	25398	25398		0.79363	0	1	6807700			20674	3264	13649	13791	28120	28120					0.07671857045602337
TIKGFQQIL	9	Unmodified	_TIKGFQQIL_					0	0	0		ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.3131713867188	2	524.313492	1046.61243	0.53452	0.00028026	-0.012369	-6.485E-06	0.52215	0.00027377	524.3132483991542	66.556	0.64586	66.621	66.365	67.011	0.065063					35	24	2	0	0	0	0.24021	1	15186	15186		13.906	3.8321	1	180240			20675	1687	13650	13792	28121	28121					0.09098906374038052
TIKWYLEN	8	Unmodified	_TIKWYLEN_					0	0	0		tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2315673828125	2	533.782025	1065.5495	0.51561	0.00027522	3.6812	0.001965	4.1969	0.0022402	533.7840457984973	57.783	0.31176	57.783	57.569	57.881	0					13	10	2	0	0	0	0.35759	1	12648	12648		14.838	3.198	1	77678			20676	13520	13651	13793	28122	28122					0.019343405859899576
TILDYLSDFVL	11	Unmodified	_TILDYLSDFVL_					0	0	0			REV__nc|ENSG00000124181|P19174|PLCG1	REV__nc|ENSG00000124181|P19174|PLCG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.567626953125	3	433.567466	1297.68057	0.32627	0.00014146	0.37342	0.0001619	0.69969	0.00030336	433.5675453437488	51.021	1.3123	51.021	50.762	52.075	0					101	44	4	0	0	0	0.38806	1	10652	10652		7.0371	7.0371	1	783010	+		20677	8948	13652	13794	28123	28123					0.04363686443366532
TIMIEMLC	8	Unmodified	_TIMIEMLC_					0	0	0			REV__ENST00000336787.5_1_15:55527092-55527146:-|nuORF	REV__ENST00000336787.5_1_15:55527092-55527146:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2298583984375	2	477.228867	952.443182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.002	1	94.04	93.54	94.54	0.038086								0	0	0	0.38822	1	23564	23564		5.2307	2.6532	1		+		20678	11444	13653	13795	28124	28124					-0.034941975668516534
TIMLFVVIF	9	Unmodified	_TIMLFVVIF_					0	0	0			REV__ENST00000482587.5_3_1:179833497-179833611:-|nuORF	REV__ENST00000482587.5_3_1:179833497-179833611:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.8193969726562	2	541.819564	1081.62458	-0.016483	-8.931E-06	-0.14323	-7.7604E-05	-0.15971	-8.6535E-05	541.8193761135564	28.715	0.51252	28.794	28.595	29.107	0.078287					73	33	3	0	0	0	0.34646	1	3843	3843		0.6015	0	1	134810	+		20679	12104	13654	13796	28125	28125					0.08702806792871343
TIMYWSGWE	9	Unmodified	_TIMYWSGWE_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7596435546875	2	586.757692	1171.50083	0.33584	0.00019706	0.65399	0.00038373	0.98983	0.00058079	586.7588338056703	35.661	0.43373	35.661	35.51	35.944	0					32	16	3	0	0	0	0.3354	1	5975	5975		2.0598	0	1	39572			20680	5486	13655	13797	28126	28126					-0.07805896045420013
TIMYWSGWE	9	Unmodified	_TIMYWSGWE_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	586.757692	1171.50083	0.51432	0.00030178	1.8304	0.001074	2.3448	0.0013758	586.7587081744774	35.67	0.42385	35.749	35.539	35.963	0.078831	0.043964	0.00057399	NaN	2.0598	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37365			20681	5486	13655	13797							-0.07805896045420013
TIPDLDWEL	9	Unmodified	_TIPDLDWEL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.27734375	2	551.276772	1100.53899	0.53588	0.00029542	0.37567	0.0002071	0.91154	0.00050251	551.276956544414	88.347	1.8111	88.347	87.664	89.475	0					202	70	4	0	0	0	0.0032694	8	21990	21941;21990;22035;22079;22128;22186;22259;22265		108	57.142	1	1279400			20682	833	13656	13798	28127;28128;28129;28130;28131;28132;28133;28134	28128					-0.007256868591184684
TIPDLDWEL	9	Unmodified	_TIPDLDWEL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7666625976562	2	551.276772	1100.53899	0.3363	0.00018539	2.0126	0.0011095	2.3489	0.0012949	551.2779323075118	90.288	0.22856	90.288	90.184	90.413	0					11	8	2	0	0	0	0.21603	1	22602	22602		20.454	4.6064	1	82788			20683	833	13656	13798	28135	28135					-0.007256868591184684
TIPDLDWEL	9	Unmodified	_TIPDLDWEL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2777099609375	2	551.276772	1100.53899	0.48794	0.00026899	0.27186	0.00014987	0.7598	0.00041886	551.2768591472714	88.234	1.7589	88.264	87.653	89.412	0.030037					205	67	4	0	0	0	0.003963	8	21792	21741;21792;21841;21888;21937;21991;22032;22099		103.75	52.893	1	1118800			20684	833	13656	13798	28136;28137;28138;28139;28140;28141;28142;28143	28137					-0.007256868591184684
TIQDKLSVQ	9	Unmodified	_TIQDKLSVQ_					0	0	0			REV__nc|ENSG00000183765|O96017-11|CHEK2	REV__nc|ENSG00000183765|O96017-11|CHEK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7894287109375	2	516.290214	1030.56587	0.23069	0.0001191	-0.57604	-0.0002974	-0.34535	-0.0001783	516.7890211128837	50.822	1.015	50.822	50.46	51.475	0					96	34	4	0	0	0	0.20358	1	10519	10519		18.146	1.2041	1	555190	+		20685	7764	13657	13799	28144	28144					0.051814217520814054
TIQDLESQKS	10	Unmodified	_TIQDLESQKS_					0	0	0		nc|ENSG00000168065|Q9NSA0-2|SLC22A11;ENSG00000168065|ENST00000301891|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7921142578125	2	574.793318	1147.57208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.614	1	41.614	41.114	42.114	0								0	0	0	0.33762	1	7779	7779		2.9952	0	1				20686	4260	13658	13800	28145	28145					0.0041989519295384525
TIQDLESQKS	10	Unmodified	_TIQDLESQKS_					0	0	0		nc|ENSG00000168065|Q9NSA0-2|SLC22A11;ENSG00000168065|ENST00000301891|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.75927734375	2	574.793318	1147.57208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.633	1	41.633	41.133	42.133	0								0	0	0	0.33762	1	7785	7785		2.9952	0	1				20687	4260	13658	13800	28146	28146					0.0041989519295384525
TISLTRTRY	9	Unmodified	_TISLTRTRY_					0	0	0			REV__ENSG00000058729|ENST00000283109|RIOK2	REV__ENSG00000058729|ENST00000283109|RIOK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8176879882812	2	555.81693	1109.61931	0.63152	0.00035101	-0.038651	-2.1483E-05	0.59287	0.00032953	555.8169240605948	103.74	0.16601	103.78	103.67	103.83	0.03791					34	15	3	0	0	0	0.25845	1	26479	26479		2.0598	2.0598	1	147950	+		20688	8075	13659	13801	28147	28147					0.06888219254597061
TISVYPEENN	10	Unmodified	_TISVYPEENN_					0	0	0			REV__XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	REV__XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.8004150390625	2	583.272218	1164.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.4	1	100.45	99.947	100.95	0.042839								0	0	0	0.33762	1	25514	25514		2.9952	0	1		+		20689	8040	13660	13802	28148	28148					-0.04580080215419002
TITDDCDTI	9	Unmodified	_TITDDCDTI_					0	0	0		nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;ENSG00000160505|ENST00000301295|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.71331787109375	2	498.713147	995.411742	0.6292	0.00031379	-0.0046473	-2.3176E-06	0.62455	0.00031147	498.71297390364833	54.104	0.53415	54.104	53.867	54.401	0					42	18	3	0	0	0	0.26684	1	11567	11567		10.824	0	1	400720			20690	3762	13661	13803	28149	28149					-0.08614775795581409
TITPIVLYF	9	Unmodified	_TITPIVLYF_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.8131103515625	2	533.812793	1065.61103	0.31734	0.0001694	-0.2293	-0.0001224	0.088041	4.6997E-05	533.8126200281382	95.362	0.32147	95.362	95.118	95.439	0					30	13	3	0	0	0	0.035878	1	24113	24113		46.921	8.7697	1	191200			20691	4479	13662	13804	28150	28150					0.08085272285279643
TITPIVLYF	9	Unmodified	_TITPIVLYF_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8126831054688	2	533.812793	1065.61103	0.44669	0.00023845	0.071544	3.8191E-05	0.51824	0.00027664	533.8128282277904	95.598	1.0832	95.637	95.115	96.198	0.038864					81	50	3	0	0	0	0.030375	1	23979	23979		50.855	20.63	1	426720			20692	4479	13662	13804	28151	28151					0.08085272285279643
TIVMFIALI	9	Unmodified	_TIVMFIALI_					0	0	0			REV__ENSG00000198246|ENST00000373189|SLC29A3	REV__ENSG00000198246|ENST00000373189|SLC29A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2814025878906	2	510.811739	1019.60893	0.34219	0.00017479	2.9948	0.0015298	3.337	0.0017046	510.81335428356533	84.084	0.37863	84.106	83.838	84.217	0.021744					21	13	2	0	0	0	0.25051	1	20510	20510		7.9102	0.62092	1	84267	+		20693	10890	13663	13805	28152	28152					0.09990520275823656
TIVNILTNR	9	Unmodified	_TIVNILTNR_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3143310546875	2	522.314023	1042.61349	0.58209	0.00030404	-0.06941	-3.6254E-05	0.51268	0.00026778	522.3139635823303	54.716	1.0881	54.716	54.52	55.608	0					79	43	4	0	0	0	1.126E-12	3	11763	11718;11763;11810		179.28	86.63	1	821130			20694	4887	13664	13806	28153;28154;28155	28154					0.0938912074293512
TIVNILTNR	9	Unmodified	_TIVNILTNR_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.3140869140625	2	522.314023	1042.61349	0.54218	0.00028319	-0.066721	-3.4849E-05	0.47546	0.00024834	522.313934011051	54.666	0.7925	54.732	54.582	55.374	0.065132					67	34	3	0	0	0	0.00024938	2	11581	11581;11632		135.86	66.759	1	727970			20695	4887	13664	13806	28156;28157	28156					0.0938912074293512
TIVTSISDEF	10	Unmodified	_TIVTSISDEF_					0	0	0		nc|ENSG00000165970|Q9Y345-2|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2731323242188	2	556.279512	1110.54447	0.69329	0.00038566	-2.6327	-0.0014645	-1.9394	-0.0010789	556.2776287796726	86.016	1.2684	86.041	85.695	86.963	0.025169					86	43	3	0	0	0	0.43972	1	21338	21338		6.7232	0	1	1207500			20696	4119	13665	13807	28158	28158					-0.006380080672670374
TIYGRMWYF	9	Unmodified	_TIYGRMWYF_					0	0	0		nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE;nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.31982421875	2	618.797152	1235.57975	0.055535	3.4365E-05	-0.0012106	-7.4908E-07	0.054324	3.3616E-05	618.7970710548673	74.135	0.6574	74.184	74.016	74.673	0.048546					33	23	2	0	0	0	0.25579	1	17649	17649		4.3292	0	1	253480			20697	5057	13666	13808	28159	28159					-0.028616240204655696
TKATGVSVTS	10	Unmodified	_TKATGVSVTS_					0	0	0			REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.7611083984375	2	475.761289	949.508025	-0.50193	-0.0002388	-0.053717	-2.5557E-05	-0.55565	-0.00026436	475.76126521487464	23.368	1.0303	23.368	23.165	24.196	0					228	96	4	0	0	0	0.45945	1	2514	2514		2.9952	0.69251	1	674590	+		20698	13003	13667	13809	28160	28160					0.03125159826686286
TKDEVLYVF	9	Unmodified	_TKDEVLYVF_					0	0	0		nc|ENSG00000138760|Q14108-2|SCARB2;ENSG00000138760|ENST00000264896|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3031616210938	2	557.294965	1112.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.255	1	87.282	86.782	87.782	0.027573								0	0	0	0.13043	1	21512	21512		28.487	6.7402	1				20699	2936	13668	13810	28161	28161					0.02359190037600456
TKEFDYLPP	9	Unmodified	_TKEFDYLPP_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2780151367188	2	555.279315	1108.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.22	1	107.24	106.74	107.74	0.025711								0	0	0	0.28527	1	27464	27464		2.0598	0.21551	1				20700	3823	13669	13811	28162	28162					-0.005853829964962642
TKIFSPPE	8	Unmodified	_TKIFSPPE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7506408691406	2	459.750193	917.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.349	1	32.423	31.923	32.923	0.07378								0	0	0	0.38822	1	4874	4874		0.69038	0	1		+		20701	9733	13670	13812	28163	28163					0.023789801489101592
TKIGHDNL	8	Unmodified	_TKIGHDNL_					0	0	0			REV__tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	REV__tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.8859558105469	2	449.243067	896.47158	-0.32349	-0.00014533	-0.054789	-2.4614E-05	-0.37828	-0.00016994	449.2429955762237	40.784	0.43755	40.874	40.743	41.181	0.089642					25	17	2	0	0	0	0.3576	1	7436	7436		1.8442	0	1	26802	+		20702	13133	13671	13813	28164	28164					0.0192032772059747
TKIGSLFSRN	10	Unmodified	_TKIGSLFSRN_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8165893554688	2	561.81693	1121.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.46	1	101.46	100.96	101.96	0								0	0	0	0.33805	1	25990	25990		2.4985	0.19575	1		+		20703	9150	13672	13814	28165	28165					0.06336219254626485
TKIGSLFSRN	10	Unmodified	_TKIGSLFSRN_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8179321289062	2	561.81693	1121.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.47	1	101.51	101.01	102.01	0.042656								0	0	0	0.33805	1	25837	25837		2.4985	0	1		+		20704	9150	13672	13814	28166	28166					0.06336219254626485
TKIWEEVL	8	Unmodified	_TKIWEEVL_					0	0	0		sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8038024902344	2	509.2844	1016.55425	0.25886	0.00013184	0.44934	0.00022884	0.70821	0.00036068	509.2842482780489	79.035	0.54795	79.066	78.818	79.366	0.030159					38	18	3	0	0	0	0.50815	1	19037	19037		11.64	0	1	311980			20705	13394	13673	13815	28167	28167					0.04663224728756177
TKKKKKILAS	10	Unmodified	_TKKKKKILAS_					0	0	0			REV__ENSG00000097007|ENST00000318560|ABL1	REV__ENSG00000097007|ENST00000318560|ABL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8922729492188	2	572.892441	1143.77033	-0.073856	-4.2312E-05	0.38165	0.00021865	0.3078	0.00017633	572.8925885973038	111.87	1.0118	111.87	111.74	112.75	0					197	112	3	0	0	0	0.4753	1	28674	28674		0	0	1	4123600	+		20706	8350	13674	13816	28168	28168					0.2041940563328808
TKKKKKKKG	9	Unmodified	_TKKKKKKKG_					0	0	0			REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF	REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.3799438476562	2	537.3795	1072.74445	0.48548	0.00026089	0.18259	9.8121E-05	0.66807	0.00035901	537.3794539873859	112.03	1.0116	112.04	111.86	112.87	0.014595					281	117	3	0	0	0	0.34754	4	28559	28559;28633;28752;28787		0.45834	0	1	7156300	+		20707	11332	13675	13817	28169;28170;28171;28172	28169					0.2109855618164147
TKKKKKKKG	9	Unmodified	_TKKKKKKKG_					0	0	0			REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF	REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.3795776367188	2	537.3795	1072.74445	0.48892	0.00026274	-0.22583	-0.00012136	0.26309	0.00014138	537.3792504944396	112.91	0.38516	112.93	112.87	113.25	0.013817					61	50	2	0	0	0	0.35102	1	28827	28827		0	0	1	271370	+		20708	11332	13675	13817	28173	28173					0.2109855618164147
TKKLFRALST	10	Unmodified	_TKKLFRALST_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8590087890625	2	582.858598	1163.70264	0.10628	6.1945E-05	1.7465	0.0010179	1.8527	0.0010799	582.8595400677557	109.65	0.13401	109.65	109.53	109.67	0					29	12	3	0	0	0	0.45794	2	28202	28202;28212		3.2813	1.4371	1	3050000	+		20709	8321	13676	13818	28174;28175	28174					0.1273395570244702
TKKLFRALST	10	Unmodified	_TKKLFRALST_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.8592529296875	2	582.858598	1163.70264	0.54162	0.00031569	2.306	0.0013441	2.8476	0.0016598	582.8599247353552	109.64	0.10356	109.66	109.58	109.69	0.017242					23	11	3	0	0	0	0.45794	1	28039	28039		3.2813	0.28607	1	3122100	+		20710	8321	13676	13818	28176	28176					0.1273395570244702
TKKLFRALST	10	Unmodified	_TKKLFRALST_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	582.858598	1163.70264	0.10628	6.1945E-05	1.7465	0.0010179	1.8527	0.0010799	582.8595400677557	109.65	0.13401	109.65	109.53	109.67	0	-0.0020838	-0.00025715	NaN	3.2813	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3050000	+		20711	8321	13676	13818							0.1273395570244702
TKKLFRALST	10	Unmodified	_TKKLFRALST_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	582.858598	1163.70264	0.54162	0.00031569	2.306	0.0013441	2.8476	0.0016598	582.8599247353552	109.64	0.10356	109.66	109.58	109.69	0.017242	0.0020838	0.00039512	NaN	3.2813	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3122100	+		20712	8321	13676	13818							0.1273395570244702
TKKNKKKLK	9	Unmodified	_TKKNKKKLK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3843383789062	2	558.384783	1114.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.8	1	119.8	119.3	120.3	0								0	0	0	0.29525	1	30150	30150		0	0	1		+		20713	10399	13677	13819	28177	28177					0.20222538836060266
TKKNKKKLK	9	Unmodified	_TKKNKKKLK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3844604492188	2	558.384783	1114.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.37	1	115.38	114.88	115.88	0.013092								0	0	0	0.29525	1	29335	29335		0	0	1		+		20714	10399	13677	13819	28178	28178					0.20222538836060266
TKKNKKKLK	9	Unmodified	_TKKNKKKLK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.385009765625	2	558.384783	1114.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.96	1	115.98	115.48	116.48	0.013062								0	0	0	0.29525	1	29455	29455		0	0	1		+		20715	10399	13677	13819	28179	28179					0.20222538836060266
TKKNKKKLK	9	Unmodified	_TKKNKKKLK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3847045898438	2	558.384783	1114.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.73	1	116.75	116.25	117.25	0.013062								0	0	0	0.29525	1	29586	29586		0	0	1		+		20716	10399	13677	13819	28180	28180					0.20222538836060266
TKKNKKKLK	9	Unmodified	_TKKNKKKLK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.384521484375	2	558.384783	1114.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.51	1	117.53	117.03	118.03	0.013062								0	0	0	0.29525	1	29704	29704		0	0	1		+		20717	10399	13677	13819	28181	28181					0.20222538836060266
TKKRKKKL	8	Unmodified	_TKKRKKKL_					0	0	0			REV__ENST00000369484.7_3_X:154290140-154290236:-|nuORF	REV__ENST00000369484.7_3_X:154290140-154290236:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3663940429688	2	515.366393	1028.71823	0.31658	0.00016315	0.029685	1.5299E-05	0.34627	0.00017845	515.3663213894835	112.16	0.90182	112.18	111.97	112.87	0.014595					297	103	4	0	0	0	0.5411	1	28663	28663		0.6015	0	1	6953900	+		20718	11581	13678	13820	28182	28182					0.20502287010162945
TKLDEESIPI	10	Unmodified	_TKLDEESIPI_					0	0	0			REV__tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	REV__tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.809326171875	2	572.808436	1143.60232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.461	1	97.461	96.961	97.961	0								0	0	0	0.33681	1	24775	24775		3.9444	0.66309	1		+		20719	13101	13679	13821	28183	28183					0.03626253858146811
TKLLVKLLKF	10	Unmodified	_TKLLVKLLKF_					0	0	0			REV__ENST00000474953.5_1_1:235346012-235357339:-|nuORF	REV__ENST00000474953.5_1_1:235346012-235357339:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.9148559570312	2	601.915384	1201.81622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.83	1	115.84	115.34	116.34	0.013092								0	0	0	0.34018	1	29428	29428		0	0	1		+		20720	12047	13680	13822	28184	28184					0.22338050815483257
TKLQLQEAL	9	Unmodified	_TKLQLQEAL_					0	0	0		nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;ENSG00000151065|ENST00000280665|DCP1B	nc|ENSG00000151065|Q8IZD4-2|DCP1B	nc|ENSG00000151065|Q8IZD4-2|DCP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7946166992188	2	522.308406	1042.60226	0.48392	0.00025276	3.0361	0.0015858	3.52	0.0018385	522.3096581066542	92.585	0.70667	92.621	92.452	93.159	0.03653					28	13	3	0	0	0	0.20966	1	23143	23143		17.443	3.5366	1	226340			20721	3445	13681	13823	28185	28185					0.08266298648823067
TKLTLWYIG	9	Unmodified	_TKLTLWYIG_					0	0	0			REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.8160400390625	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.15	1	119.16	118.66	119.66	0.013062								0	0	0	0.29233	1	29960	29960		0.6015	0.076735	1		+		20722	11639	13682	13824	28186	28186					0.07411790516789551
TKPHTYTH	8	Unmodified	_TKPHTYTH_					0	0	0			REV__ENST00000551156.5_2_12:56347595-56347808:+|nuORF	REV__ENST00000551156.5_2_12:56347595-56347808:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2636413574219	2	492.748516	983.482479	0.06703	3.3029E-05	0.086045	4.2398E-05	0.15307	7.5427E-05	492.7486501530027	34.208	0.24617	34.208	34.091	34.337	0					10	9	2	0	0	0	0.3576	1	5572	5572		5.2307	0	1	12459	+		20723	12436	13683	13825	28187	28187					-0.009922699051116979
TKPKSLSRE	9	Unmodified	_TKPKSLSRE_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3035888671875	2	523.303655	1044.59276	0.50452	0.00026402	-0.077575	-4.0595E-05	0.42695	0.00022342	523.3035016016728	82.868	2.4206	82.868	81.98	84.401	0					302	93	5	0	0	0	0.30757	1	20702	20702		5.7319	0	1	3364900	+		20724	9366	13684	13826	28188	28188					0.07224530363282611
TKPLAPLLAE	10	Unmodified	_TKPLAPLLAE_					0	0	0			REV__ENST00000538091.1_1_11:113569612-113570777:-|nuORF	REV__ENST00000538091.1_1_11:113569612-113570777:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.8218994140625	2	526.82115	1051.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.63	1	109.63	109.13	110.13	0								0	0	0	0.33528	1	28210	28210		5.7319	1.4026	1		+		20725	10087	13685	13827	28189	28189					0.10399773171229754
TKPLAPLLAE	10	Unmodified	_TKPLAPLLAE_					0	0	0			REV__ENST00000538091.1_1_11:113569612-113570777:-|nuORF	REV__ENST00000538091.1_1_11:113569612-113570777:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.8228149414062	2	526.82115	1051.62775	0.20104	0.00010591	1.5674	0.00082576	1.7685	0.00093167	526.8221365993562	109.8	0.19859	109.82	109.78	109.98	0.017242					47	27	2	0	0	0	0.43214	1	28078	28078		8.1555	1.9497	1	1584500	+		20726	10087	13685	13827	28190	28190					0.10399773171229754
TKPRVDVG	8	Unmodified	_TKPRVDVG_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.2544250488281	2	436.253434	870.492316	0.09821	4.2845E-05	2.0823	0.00090839	2.1805	0.00095123	436.2542376437005	108.19	0.21731	108.19	108.1	108.32	0					36	31	2	0	0	0	0.53771	1	27894	27894		0.79363	0	1	4635300			20727	3662	13686	13828	28191	28191					0.051889181002820806
TKRGQAALDR	10	Unmodified	_TKRGQAALDR_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3173828125	2	558.317628	1114.6207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.313	1	18.313	17.813	18.813	0								0	0	0	0.34018	1	1094	1094		0	0	1				20728	3109	13687	13829	28192	28192					0.06797853343346105
TKRGQAALDR	10	Unmodified	_TKRGQAALDR_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3175659179688	2	558.317628	1114.6207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.133	1	18.22	17.72	18.72	0.087601								0	0	0	0.34018	1	991	991		0	0	1				20729	3109	13687	13829	28193	28193					0.06797853343346105
TKRLLLRI	8	Unmodified	_TKRLLLRI_					0	0	0		ENST00000461865.1_1_X:38008966-38013244:-|nuORF	ENST00000461865.1_1_X:38008966-38013244:-|nuORF	ENST00000461865.1_1_X:38008966-38013244:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8533020019531	2	506.853119	1011.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.9	1	112.92	112.42	113.42	0.013817								0	0	0	0.38822	1	28818	28818		0.6015	0	1				20730	6613	13688	13830	28194	28194					0.18630598118829766
TKRQTKSLT	9	Unmodified	_TKRQTKSLT_					0	0	0			REV__ENSG00000107937|ENST00000360803|GTPBP4	REV__ENSG00000107937|ENST00000360803|GTPBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8173217773438	2	531.81693	1061.61931	0.39806	0.0002117	0.35998	0.00019144	0.75804	0.00040314	531.8170671636873	85.804	0.9053	85.804	85.503	86.408	0					61	37	2	0	0	0	0.32112	1	21268	21268		3.9444	3.9444	1	251030	+		20731	8605	13689	13831	28195	28195					0.0909621925461579
TKRRLLLI	8	Unmodified	_TKRRLLLI_					0	0	0		nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.85321044921875	2	506.853119	1011.69168	-0.12201	-6.184E-05	-0.13344	-6.7634E-05	-0.25545	-0.00012947	506.85295430011547	112.14	1.2356	112.14	111.92	113.16	0					352	141	4	0	0	0	0.54081	2	28953	28916;28953		0.79363	0.10326	1	8677500			20732	7582	13690	13832	28196;28197	28197					0.18630598118852504
TKRRLLLI	8	Unmodified	_TKRRLLLI_					0	0	0		nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.85296630859375	2	506.853119	1011.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.11	1	113.11	112.61	113.61	0								0	0	0	0.38822	1	28987	28987		0.79363	0.19213	1				20733	7582	13690	13832	28198	28198					0.18630598118852504
TKRRLLLI	8	Unmodified	_TKRRLLLI_					0	0	0		nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.85284423828125	2	506.853119	1011.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.16	1	113.18	112.68	113.68	0.013817								0	0	0	0.38822	1	28879	28879		0.79363	0.19213	1				20734	7582	13690	13832	28199	28199					0.18630598118852504
TKRRLLLI	8	Unmodified	_TKRRLLLI_					0	0	0		nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.853271484375	2	506.853119	1011.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.32	1	113.33	112.83	113.83	0.013817								0	0	0	0.38822	1	28914	28914		0.79363	0.19213	1				20735	7582	13690	13832	28200	28200					0.18630598118852504
TKSSHLKA	8	Unmodified	_TKSSHLKA_					0	0	0		PIBF1-KLF5|1|fusion;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000105610|ENST00000264834|KLF1;nc|ENSG00000136826|O43474|KLF4;ENSG00000136826|ENST00000374672|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;nc|ENSG00000136826|O43474-4|KLF4;ENSG00000163884|ENST00000296233|KLF15;ENSG00000118922|ENST00000703967|KLF12;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;ENSG00000127528|ENST00000248071|KLF2;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000118263|ENST00000309446|KLF7;ENSG00000067082|ENST00000497571|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;nc|ENSG00000118263|O75840-4|KLF7;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000067082|Q99612-3|KLF6;ENSG00000102349|ENST00000468660|KLF8;ENSG00000109787|ENST00000261438|KLF3	PIBF1-KLF5|1|fusion;ENSG00000109787|ENST00000261438|KLF3	PIBF1-KLF5|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.2532653808594	2	436.253434	870.492316	0.14112	6.1564E-05	-0.37646	-0.00016423	-0.23534	-0.00010267	436.2531689550047	108.16	0.11848	108.18	108.12	108.24	0.022224					24	16	2	0	0	0	0.53817	1	27684	27684		2.5775	0	1	4722300			20736	1318;1640	13691	13833	28201	28201					0.051889181002820806
TKSTKKSA	8	Unmodified	_TKSTKKSA_					0	0	0			REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.7527160644531	2	425.753267	849.491981	0.11457	4.8779E-05	-1.1042	-0.00047014	-0.98968	-0.00042136	425.75263726496524	83.607	0.52776	83.628	83.387	83.915	0.021744					31	18	2	0	0	0	0.54199	2	20371	20371;20422		0	0	1	300380	+		20737	9555	13692	13834	28202;28203	28202					0.06121498380412049
TKSTKKSA	8	Unmodified	_TKSTKKSA_					0	0	0			REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	425.753267	849.491981	0.73429	0.00031263	-1.993	-0.00084852	-1.2587	-0.00053589	425.75234413932736	83.621	0.65029	83.621	83.401	84.051	0	-0.0038003	-0.0003508	NaN	0	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346330	+		20738	9555	13692	13834							0.06121498380412049
TKTDKTLVL	9	Unmodified	_TKTDKTLVL_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.81268310546875	2	509.810782	1017.60701	0.27742	0.00014143	3.8613	0.0019685	4.1387	0.00211	509.8123839952348	102.01	0.15039	102.01	101.98	102.13	0					10	8	2	0	0	0	0.28919	1	26166	26166		8.1555	0.8663	1	133020		+	20739	1593	13693	13835	28204	28204					0.09891182791557185
TKTRKKGLI	9	Unmodified	_TKTRKKGLI_					0	0	0			REV__nc|ENSG00000143379|Q15047-2|SETDB1	REV__nc|ENSG00000143379|Q15047-2|SETDB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.849365234375	2	522.848033	1043.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.45	1	108.45	107.95	108.95	0								0	0	0	0.28631	1	27968	27968		1.8442	1.3195	1		+		20740	9462	13694	13836	28205	28205					0.16141990393612105
TKTRKKGLI	9	Unmodified	_TKTRKKGLI_					0	0	0			REV__nc|ENSG00000143379|Q15047-2|SETDB1	REV__nc|ENSG00000143379|Q15047-2|SETDB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.8482055664062	2	522.848033	1043.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.46	1	108.46	107.96	108.96	0								0	0	0	0.28631	1	27971	27971		1.8442	1.3195	1		+		20741	9462	13694	13836	28206	28206					0.16141990393612105
TKYLENSL	8	Unmodified	_TKYLENSL_					0	0	0			REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1	REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2589111328125	2	484.258382	966.502212	0.18832	9.1195E-05	0.013781	6.6737E-06	0.2021	9.7869E-05	484.2583685769922	65.161	0.53703	65.23	65.035	65.572	0.068916					29	20	2	0	0	0	0.53614	1	14851	14851		3.9444	0	1	161650	+		20742	13239	13695	13837	28207	28207					0.017620613150143072
TLAEAAKINKN	11	Unmodified	_TLAEAAKINKN_					0	0	0			REV__tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	REV__tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8150024414062	2	586.83532	1171.65609	0.37564	0.00022044	-2.1007	-0.0012328	-1.725	-0.0010123	586.8337836529836	86.574	1.0007	86.574	85.83	86.831	0					72	38	3	0	0	0	0.31057	1	21395	21395		5.2969	0	1	461930	+		20743	13227	13696	13838	28208	28208					0.07712471080526484
TLASLNRPAD	10	Unmodified	_TLASLNRPAD_					0	0	0			REV__ENSG00000125485|ENST00000372159|DDX31	REV__ENSG00000125485|ENST00000372159|DDX31	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7754516601562	2	529.285463	1056.55637	0.30072	0.00015917	1.4487	0.00076678	1.7494	0.00092595	529.2861741830719	91.513	1.2315	91.548	91.169	92.4	0.035439					66	43	2	0	0	0	0.29402	1	22796	22796		24.991	7.8781	1	325150	+		20744	8971	13697	13839	28209	28209					0.030356534665770596
TLCDSIILI	9	Unmodified	_TLCDSIILI_					0	0	0		tr|U7SV75|U7SV75_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01157PE=4SV=1	tr|U7SV75|U7SV75_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01157PE=4SV=1	tr|U7SV75|U7SV75_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01157PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7806091308594	2	495.780636	989.546719	0.47525	0.00023562	-0.40055	-0.00019859	0.074696	3.7033E-05	495.7803029552349	85.921	0.95534	85.921	85.482	86.438	0					74	40	2	0	0	0	0.083504	2	21267	21267;21314		36.044	0	1	497310			20745	13624	13698	13840	28210;28211	28210					0.05152749136846069
TLCTTLDTII	10	Unmodified	_TLCTTLDTII_					0	0	0		ENST00000420685.1_1_21:15219408-15219965:-|nuORF	ENST00000420685.1_1_21:15219408-15219965:-|nuORF	ENST00000420685.1_1_21:15219408-15219965:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.785888671875	2	547.294107	1092.57366	0.3152	0.00017251	1.5621	0.00085494	1.8773	0.0010274	547.2949803952112	51.358	0.53534	51.428	51.236	51.771	0.069878					34	20	2	0	0	0	0.44246	1	10660	10660		6.2058	1.4498	1	144070			20746	6447	13699	13841	28212	28212					0.03107812957364331
TLDPEPQH	8	Unmodified	_TLDPEPQH_					0	0	0		nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;ENSG00000151065|ENST00000280665|DCP1B	nc|ENSG00000151065|Q8IZD4-2|DCP1B	nc|ENSG00000151065|Q8IZD4-2|DCP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.72381591796875	2	468.724707	935.43486	0.32988	0.00015462	-1.1469	-0.00053758	-0.81702	-0.00038296	468.72386381577167	81.075	0.68526	81.099	80.82	81.505	0.023613					68	23	4	0	0	0	0.53614	1	19690	19690		3.9444	0	1	942090			20747	3445	13700	13842	28213	28213					-0.03543968895951366
TLDPVEKAL	9	Unmodified	_TLDPVEKAL_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.R311C|1|0.31|ENSG00000109971|chr11:123059662-123059662|G/A|missense_variant;ENST00000425843.1_1_X:120337800-120338163:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2820739746094	2	493.281857	984.549162	0.27086	0.00013361	-0.027849	-1.3737E-05	0.24301	0.00011987	493.28173038449114	49.024	0.79176	49.024	48.77	49.562	0					63	27	4	0	0	0	0.018465	2	9984	9984;10033		59.368	15.51	1	381700			20748	1646	13701	13843	28214;28215	28214					0.05626920866131968
TLDPVEKAL	9	Unmodified	_TLDPVEKAL_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.R311C|1|0.31|ENSG00000109971|chr11:123059662-123059662|G/A|missense_variant;ENST00000425843.1_1_X:120337800-120338163:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2818603515625	2	493.281857	984.549162	0.14545	7.175E-05	0.10095	4.9795E-05	0.2464	0.00012155	493.2817808046368	48.885	0.70399	48.961	48.78	49.484	0.076607					51	25	4	0	0	0	0.081383	2	9872	9828;9872		36.506	11.908	1	277940			20749	1646	13701	13843	28216;28217	28217					0.05626920866131968
TLDTTTLSTF	10	Unmodified	_TLDTTTLSTF_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2774047851562	2	550.279512	1098.54447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.73	1	104.77	104.27	105.27	0.034004								0	0	0	0.33711	1	26785	26785		3.5965	0	1		+		20750	8179	13702	13844	28218	28218					-0.0008600806729646138
TLDYESYKF	9	Unmodified	_TLDYESYKF_					0	0	0		nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	nc|ENSG00000157212|Q6ZW49-2|PAXIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.850341796875	2	583.274229	1164.53391	0.67572	0.00039413	-1.0622	-0.00061953	-0.38643	-0.00022539	583.2734084275793	62.934	1.2837	63.007	62.478	63.761	0.072701					82	49	2	0	0	0	0.24929	1	14189	14189		9.3831	0	1	665380			20751	3652	13703	13845	28219	28219					-0.0417799072172329
TLDYYVKG	8	Unmodified	_TLDYYVKG_					0	0	0			REV__OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	REV__OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.74664306640625	2	479.74765	957.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.659	1	24.755	24.255	25.255	0.096073								0	0	0	0.38822	1	2623	2623		2.0598	1.2661	1		+		20752	8561	13704	13846	28220	28220					0.0003067628629196406
TLEDVPSYPPE	11	Unmodified	_TLEDVPSYPPE_					0	0	0		nc|ENSG00000171587|O60469-2|DSCAM;ENSG00000171587|ENST00000400454|DSCAM	nc|ENSG00000171587|O60469-2|DSCAM	nc|ENSG00000171587|O60469-2|DSCAM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8082885742188	2	623.795526	1245.5765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.313	1	70.313	69.813	70.813	0								0	0	0	0.3074	1	16502	16502		12.241	0	1				20753	4448	13705	13847	28221	28221					-0.03646640384135935
TLEEFSYEFF	10	Unmodified	_TLEEFSYEFF_					0	0	0		nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF	nc|ENSG00000169994|Q6PIF6-2|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.86370849609375	3	437.864172	1310.57069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.299	1	39.299	38.799	39.799	0								0	0	0	0.33952	1	7081	7081		0.77653	0	1				20754	4371	13706	13848	28222	28222					-0.07217738895815273
TLERALLVTD	10	Unmodified	_TLERALLVTD_					0	0	0		ENST00000476047.1_1_3:76483241-76483490:+|nuORF	ENST00000476047.1_1_3:76483241-76483490:+|nuORF	ENST00000476047.1_1_3:76483241-76483490:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8251342773438	2	565.824421	1129.63429	-0.4171	-0.000236	0.53051	0.00030018	0.11341	6.4172E-05	565.8246804434128	18.04	0.19608	18.04	17.942	18.138	0					32	23	2	0	0	0	0.46827	1	1037	1037		1.3295	0	1	16192			20755	6712	13707	13849	28223	28223					0.0746566633195016
TLERALLVTD	10	Unmodified	_TLERALLVTD_					0	0	0		ENST00000476047.1_1_3:76483241-76483490:+|nuORF	ENST00000476047.1_1_3:76483241-76483490:+|nuORF	ENST00000476047.1_1_3:76483241-76483490:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	565.824421	1129.63429	0.1394	7.8875E-05	-0.1694	-9.5849E-05	-0.029999	-1.6974E-05	565.8243681845014	17.919	0.17666	18.003	17.899	18.076	0.083694	-0.018313	-0.00037347	NaN	1.3295	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22818			20756	6712	13707	13849							0.0746566633195016
TLFGYIYPF	9	Unmodified	_TLFGYIYPF_					0	0	0			REV__ENSG00000174937|ENST00000641993|OR5M3	REV__ENSG00000174937|ENST00000641993|OR5M3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8057861328125	2	560.789318	1119.56408	0.39671	0.00022247	-3.5222	-0.0019752	-3.1255	-0.0017528	560.7875153980661	73.506	0.56746	73.559	73.338	73.906	0.052574					37	22	2	0	0	0	0.073832	1	17313	17313		38.151	7.9264	1	227660	+		20757	10364	13708	13850	28224	28224					0.009084127341338899
TLFPQSPIF	9	Unmodified	_TLFPQSPIF_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-3|MON2	REV__nc|ENSG00000061987|Q7Z3U7-3|MON2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.28857421875	2	525.286943	1048.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67	1	67	66.5	67.5	0								0	0	0	0.25692	1	15496	15496		7.9102	2.1497	1		+		20758	8083	13709	13851	28225	28225					0.03699528591369017
TLFTQQIFTP	10	Unmodified	_TLFTQQIFTP_					0	0	0			REV__ZNF383|p.N164Lfs*5|1|0.09|ENSG00000188283|chr19:37242725-37242726|-/CTATTTCATA|frameshift_variant	REV__ZNF383|p.N164Lfs*5|1|0.09|ENSG00000188283|chr19:37242725-37242726|-/CTATTTCATA|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.29296875	2	598.321514	1194.62847	0.30525	0.00018264	3.2359	0.0019361	3.5411	0.0021187	598.8252268392084	71.517	0.13765	71.517	71.447	71.584	0					5	4	2	0	0	0	0.31731	1	16880	16880		6.2058	0.9089	1	35341	+		20759	10762	13710	13852	28226	28226					0.038945678202935596
TLFVSYEKF	9	Unmodified	_TLFVSYEKF_					0	0	0			REV__ENSG00000196420|ENST00000368717|S100A5	REV__ENSG00000196420|ENST00000368717|S100A5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8233642578125	2	567.297507	1132.58046	0.46945	0.00026632	2.8436	0.0016132	3.3131	0.0018795	567.3005237958139	99.414	0.069992	99.457	99.409	99.479	0.042831					8	5	2	0	0	0	0.25579	1	25208	25208		4.3292	1.7518	1	29055	+		20760	10818	13711	13853	28227	28227					0.019474939002293468
TLFYHAPP	8	Unmodified	_TLFYHAPP_					0	0	0		nc|ENSG00000173276|Q9ULJ3-2|ZBTB21;ENSG00000173276|ENST00000310826|ZBTB21	nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2431335449219	2	473.245078	944.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.79	1	32.79	32.29	33.29	0								0	0	0	0.38822	1	5125	5125		0.79363	0	1				20761	4543	13712	13854	28228	28228					0.0011441721431992846
TLFYQWNY	8	Unmodified	_TLFYQWNY_					0	0	0		ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.330322265625	2	567.766374	1133.5182	0.43331	0.00024602	-1.4528	-0.00082483	-1.0194	-0.00057881	567.7652328452044	88.208	0.48373	88.208	87.948	88.432	0					29	17	2	0	0	0	0.33807	1	21975	21975		21.747	7.8406	1	157090			20762	5864	13713	13855	28229	28229					-0.0432223244808938
TLGAVVTAI	9	Unmodified	_TLGAVVTAI_					0	0	0		nc|ENSG00000165861|Q9HBF4-2|ZFYVE1;nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1	nc|ENSG00000165861|Q9HBF4-2|ZFYVE1	nc|ENSG00000165861|Q9HBF4-2|ZFYVE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1988220214844	2	422.760561	843.506569	0.6586	0.00027843	-0.49801	-0.00021054	0.16059	6.7892E-05	422.76024178921637	79.425	0.57739	79.425	79.188	79.765	0					38	19	3	0	0	0	0.19376	1	19285	19285		25.399	0	1	399750			20763	4113	13714	13856	28230	28230					0.07855570528568023
TLGVHPDDDLL	11	Unmodified	_TLGVHPDDDLL_					0	0	0		nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4;ENSG00000221866|ENST00000321063|PLXNA4	nc|ENSG00000221866|Q9HCM2-2|PLXNA4	nc|ENSG00000221866|Q9HCM2-2|PLXNA4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8563232421875	2	597.803685	1193.59282	0.094585	5.6543E-05	1.3418	0.00080215	1.4364	0.00085869	597.8047608569381	86.442	0.37628	86.442	86.263	86.639	0					20	13	2	0	0	0	0.30659	1	21405	21405		12.241	2.1667	1	119750			20764	5589	13715	13857	28231	28231					0.003764855726103633
TLGVRRQN	8	Unmodified	_TLGVRRQN_					0	0	0			REV__ENST00000261396.5_1_1:229577072-229577156:-|nuORF	REV__ENST00000261396.5_1_1:229577072-229577156:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2875061035156	2	472.275232	942.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.183	1	90.217	89.717	90.717	0.034065								0	0	0	0.38822	1	22402	22402		4.756	0.42677	1		+		20765	11230	13716	13858	28232	28232					0.06234527597428041
TLHDMAIILIK	11	Unmodified	_TLHDMAIILIK_					0	0	0			REV__ENST00000355904.8_1_8:30492613-30510982:-|nuORF	REV__ENST00000355904.8_1_8:30492613-30510982:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3755493164062	2	634.375766	1266.73698	0.24919	0.00015808	1.0972	0.00069605	1.3464	0.00085413	634.8774243641154	108.27	0.25838	108.29	108.24	108.49	0.022224					51	35	2	0	0	0	0.40578	1	27737	27737		2.9952	0	1	3634400	+		20766	11501	13717	13859	28233	28233					0.1142803579905376
TLHLKLRL	8	Unmodified	_TLHLKLRL_					0	0	0			REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF	REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.3319396972656	2	497.332019	992.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.27	1	116.28	115.78	116.78	0.013062								0	0	0	0.38822	1	29510	29510		0	0	1		+		20767	11330	13718	13860	28234	28234					0.1528662271043686
TLHLKLRL	8	Unmodified	_TLHLKLRL_					0	0	0			REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF	REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.3323059082031	2	497.332019	992.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.78	1	116.79	116.29	117.29	0.013062								0	0	0	0.38822	1	29593	29593		0	0	1		+		20768	11330	13718	13860	28235	28235					0.1528662271043686
TLHWHQTPP	9	Unmodified	_TLHWHQTPP_					0	0	0			REV__ENST00000493076.5_1_22:35819109-35819445:+|nuORF	REV__ENST00000493076.5_1_22:35819109-35819445:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3101196289062	2	558.78289	1115.55123	0.42803	0.00023917	-0.31829	-0.00017785	0.10974	6.1319E-05	559.2841674777657	88.894	0.40342	88.894	88.605	89.009	0					22	16	2	0	0	0	0.25376	1	22107	22107		6.2058	0.47393	1	77232	+		20769	12161	13719	13861	28236	28236					-0.0019260560538896243
TLIDLPGITR	10	Unmodified	_TLIDLPGITR_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8296508789062	2	549.829506	1097.64446	0.58974	0.00032426	-0.46427	-0.00025527	0.12547	6.8986E-05	549.8291953292854	67.335	0.42927	67.335	67.213	67.642	0					27	16	2	0	0	0	0.2145	1	15647	15647		32.037	0	1	131370			20770	3660	13720	13862	28237	28237					0.09954274057167822
TLIDLPGITR	10	Unmodified	_TLIDLPGITR_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8292846679688	2	549.829506	1097.64446	0.82495	0.00045358	-0.78934	-0.000434	0.03561	1.9579E-05	549.8289550816942	67.478	0.52287	67.543	67.236	67.759	0.065071					29	17	3	0	0	0	0.28859	1	15450	15450		23.79	0	1	160870			20771	3660	13720	13862	28238	28238					0.09954274057167822
TLIEPYSRSTK	11	Unmodified	_TLIEPYSRSTK_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.8554077148438	2	647.853709	1293.69287	0.25431	0.00016475	2.6987	0.0017484	2.9531	0.0019131	647.8555968481343	81.892	0.33178	81.914	81.737	82.069	0.021866					20	11	2	0	0	0	0.40055	1	19889	19889		4.1895	0	1	133180	+		20772	9262	13721	13863	28239	28239					0.05776722906421128
TLIEPYSRSTK	11	Unmodified	_TLIEPYSRSTK_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.3263549804688	2	647.853709	1293.69287	0.25431	0.00016475	2.6987	0.0017484	2.9531	0.0019131	647.8555968481343	81.892	0.33178	81.914	81.737	82.069	0.021866					20	11	2	0	0	0	0.3104	1	19868	19868		7.1017	0	1	133180	+		20773	9262	13721	13863	28240	28240					0.05776722906421128
TLIEWILI	8	Unmodified	_TLIEWILI_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.8076171875	2	500.807511	999.600469	0.28713	0.0001438	0.16653	8.3401E-05	0.45366	0.0002272	500.8074985820484	106.92	0.84127	106.94	106.59	107.43	0.025711					268	83	4	0	0	0	0.49441	1	27473	27473		13.508	0	1	1726200	+		20774	8041	13722	13864	28241	28241					0.10065289630870211
TLISNRALN	9	Unmodified	_TLISNRALN_					0	0	0		ENST00000361055.8_1_3:69124642-69126989:-|nuORF	ENST00000361055.8_1_3:69124642-69126989:-|nuORF	ENST00000361055.8_1_3:69124642-69126989:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.2906188964844	2	501.290548	1000.56654	0.54985	0.00027564	0.11799	5.9149E-05	0.66785	0.00033478	501.2905139234308	80.889	3.0008	80.913	80.018	83.019	0.023605					358	107	5	0	0	0	0.30397	1	19337	19337		6.2058	0	1	2978500			20775	6158	13723	13865	28242	28242					0.06628261191804086
TLIYDALER	9	Unmodified	_TLIYDALER_					0	0	0		ENST00000519589.1_1_8:133153289-133492518:-|nuORF;ENSG00000184156|ENST00000388996|KCNQ3	ENST00000519589.1_1_8:133153289-133492518:-|nuORF	ENST00000519589.1_1_8:133153289-133492518:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.285400390625	2	547.298039	1092.58152	-0.029106	-1.5929E-05	-0.21367	-0.00011694	-0.24278	-0.00013287	547.2977384238811	39.823	0.5293	39.823	39.542	40.071	0					27	17	2	0	0	0	0.30397	1	7214	7214		6.2058	0	1	24205			20776	4960	13724	13866	28243	28243					0.038937082691290925
TLKKKKRK	8	Unmodified	_TLKKKKRK_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3670654296875	2	515.366393	1028.71823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.05	1	113.05	112.55	113.55	0								0	0	0	0.38822	1	28974	28974		0.69038	0	1				20777	4631	13725	13867	28244	28244					0.20502287010162945
TLKKKKRK	8	Unmodified	_TLKKKKRK_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3666381835938	2	515.366393	1028.71823	0.31797	0.00016387	0.068078	3.5085E-05	0.38604	0.00019895	515.3662609990074	112.89	0.26045	112.9	112.87	113.13	0.013817					46	33	2	0	0	0	0.54097	1	28843	28843		0.69038	0	1	309680			20778	4631	13725	13867	28245	28245					0.20502287010162945
TLLCGRGNC	9	Unmodified	_TLLCGRGNC_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|10|1|sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|10|1|sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|10|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7232360839844	2	468.723129	935.431706	0.59021	0.00027665	-0.28965	-0.00013577	0.30056	0.00014088	468.7230404394937	84.163	0.46843	84.163	83.841	84.309	0					50	19	4	0	0	0	0.3354	1	20731	20731		2.0598	0	1	1350400			20779	7412	13726	13868	28246	28246					-0.03859258545969624
TLLDAPVDHI	10	Unmodified	_TLLDAPVDHI_					0	0	0			REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.28515625	2	547.298039	1092.58152	0.099861	5.4654E-05	-0.39268	-0.00021492	-0.29282	-0.00016026	547.297726244361	39.763	0.45639	39.852	39.608	40.064	0.088566					21	16	2	0	0	0	0.41688	1	7057	7057		10.074	0	1	28836	+		20780	10271	13727	13869	28247	28247					0.038937082691290925
TLLDIGLS	8	Unmodified	_TLLDIGLS_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|33|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|33|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|33|1|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2433166503906	2	416.244744	830.474934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.856	1	45.942	45.442	46.442	0.085617								0	0	0	0.38822	1	8933	8933		2.3027	0	1				20781	7409	13728	13870	28248	28248					0.052915777746079584
TLLDPDSCRK	10	Unmodified	_TLLDPDSCRK_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7721557617188	2	574.29243	1146.57031	-0.12837	-7.372E-05	-1.6537	-0.00094973	-1.7821	-0.0010235	574.2909502017452	43.487	1.0926	43.487	43.205	44.298	0					55	38	3	0	0	0	0.31803	1	8295	8295		3.2813	0	1	50678			20782	5512	13729	13871	28249	28249					0.0028856290334715595
TLLDYWQAL	9	Unmodified	_TLLDYWQAL_					0	0	0		ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7808837890625	2	561.795132	1121.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.144	1	88.144	87.644	88.644	0								0	0	0	0.19984	1	21943	21943		18.146	3.3081	1				20783	4940	13730	13872	28250	28250					0.01978609757452432
TLLDYWQAL	9	Unmodified	_TLLDYWQAL_					0	0	0		ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7808227539062	2	561.795132	1121.57571	0.28087	0.00015779	0.26143	0.00014687	0.5423	0.00030466	561.7951718868804	86.996	2.2911	87.024	86.167	88.458	0.027573					239	91	3	0	0	0	0.26684	1	21833	21833		10.824	0.75	1	2385300			20784	4940	13730	13872	28251	28251					0.01978609757452432
TLLFLRKKF	9	Unmodified	_TLLFLRKKF_					0	0	0			REV__nc|ENSG00000010671|Q06187-2|BTK	REV__nc|ENSG00000010671|Q06187-2|BTK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.3772583007812	2	583.376426	1164.7383	0.20256	0.00011817	0.92047	0.00053698	1.123	0.00065515	583.3770736418778	40.228	0.51946	40.318	40.138	40.657	0.089642					27	19	2	0	0	0	0.34704	1	7229	7229		0.52476	0	1	39117	+		20785	7972	13731	13873	28252	28252					0.16252037950130216
TLLKLPVSLRR	11	Unmodified	_TLLKLPVSLRR_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|253|2|anti-sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|253|2|anti-sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|253|2|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.431884765625	2	648.429722	1294.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.82	1	110.84	110.34	111.34	0.015678								0	0	0	0.33503	1	28277	28277		2.4985	2.1479	1				20786	7392	13732	13874	28253	28253					0.2092616844463464
TLLPFLYTLF	10	Unmodified	_TLLPFLYTLF_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.90582275390625	3	409.905642	1226.6951	0.23026	9.4385E-05	0.087681	3.5941E-05	0.31794	0.00013033	409.9056688233971	34.352	1.2468	34.352	33.958	35.205	0					147	47	4	0	0	0	0.43972	1	5819	5819		3.5871	0	1	186930			20787	1042	13733	13875	28254	28254					0.09081803382196085
TLLPFLYTLF	10	Unmodified	_TLLPFLYTLF_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.9058837890625	3	409.905642	1226.6951	0.36878	0.00015116	0.23214	9.5157E-05	0.60092	0.00024632	409.9056665359875	35.648	3.8873	35.648	35.116	39.004	0					312	144	4	0	0	0	0.43972	1	6093	6093		3.5871	0	1	222190			20788	1042	13733	13875	28255	28255					0.09081803382196085
TLLPFLYTLF	10	Unmodified	_TLLPFLYTLF_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.9057312011719	3	409.905642	1226.6951	-0.030766	-1.2611E-05	0.22888	9.382E-05	0.19812	8.1209E-05	409.9058306732107	35.343	3.7771	35.422	34.779	38.556	0.078831					271	145	4	0	0	0	0.45443	1	5665	5665		3.8763	0	1	349330			20789	1042	13733	13875	28256	28256					0.09081803382196085
TLLQYHRII	9	Unmodified	_TLLQYHRII_					0	0	0			REV__ENST00000556539.5_1_12:56737175-56743495:-|nuORF	REV__ENST00000556539.5_1_12:56737175-56743495:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.273193359375	2	578.84549	1155.67643	0.38448	0.00022256	0.35054	0.00020291	0.73502	0.00042546	578.845699356539	83.369	0.41637	83.39	83.225	83.641	0.021744					20	14	2	0	0	0	0.25579	1	20388	20388		4.3292	0.38484	1	98822	+		20790	10220	13734	13876	28257	28257					0.10481686530988554
TLLSKRRS	8	Unmodified	_TLLSKRRS_					0	0	0		ENST00000490962.1_1_3:72926935-72927124:-|nuORF	ENST00000490962.1_1_3:72926935-72927124:-|nuORF	ENST00000490962.1_1_3:72926935-72927124:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.80108642578125	2	480.801083	959.587613	-0.16353	-7.8626E-05	0.33882	0.00016291	0.17529	8.4281E-05	480.8011117999219	89.898	0.90002	89.932	89.631	90.531	0.034058					84	36	4	0	0	0	0.52924	2	22317	22274;22317		8.5933	0	1	2005000			20791	6808	13735	13877	28258;28259	28259					0.10620271291338668
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8039855957031	2	509.803823	1017.59309	0.75821	0.00038654	-0.2462	-0.00012552	0.512	0.00026102	509.803620416363	80.911	3.0319	80.911	79.958	82.99	0					316	105	4	0	0	0	0.32112	1	19643	19643		3.9444	0	1	1350800			20792	5418	13736	13878	28260	28260					0.08499950083148633
TLLWSLTLL	9	Unmodified	_TLLWSLTLL_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.3255004882812	2	530.326068	1058.63758	0.31584	0.0001675	-0.46371	-0.00024592	-0.14787	-7.8422E-05	530.3257022516815	102.01	0.59636	102.01	101.74	102.34	0					75	43	3	0	0	0	0.19398	2	26192	26192;26241		19.257	4.4187	1	680650	+		20793	12805	13737	13879	28261;28262	28261					0.11060961176622186
TLLWSLTLL	9	Unmodified	_TLLWSLTLL_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.3253784179688	2	530.326068	1058.63758	0.49337	0.00026165	-0.53524	-0.00028385	-0.041875	-2.2207E-05	530.3256918258156	101.99	0.70361	102.03	101.72	102.42	0.042656					137	59	3	0	0	0	0.26684	2	26044	25931;26044		10.824	0.75	1	443950	+		20794	12805	13737	13879	28263;28264	28264					0.11060961176622186
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.8016357421875	2	530.801568	1059.58858	0.29655	0.00015741	-0.10508	-5.5779E-05	0.19147	0.00010163	530.8013536704989	95.145	0.71925	95.145	94.974	95.693	0					67	32	3	0	0	0	0.17247	2	24059	24059;24110		21.747	0	1	704150			20795	1798	13738	13880	28265;28266	28265					0.06117304825352221
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.8016967773438	2	530.801568	1059.58858	0.34095	0.00018098	0.10561	5.6057E-05	0.44656	0.00023704	530.8015248525766	96.108	1.0953	96.108	95.672	96.768	0					117	52	3	0	0	0	0.1182	2	24350	24303;24350		28.487	0	1	1047200			20796	1798	13738	13880	28267;28268	28268					0.06117304825352221
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8019409179688	2	530.801568	1059.58858	0.28611	0.00015187	-0.0059954	-3.1824E-06	0.28012	0.00014869	530.8014319971662	95.151	0.4962	95.19	94.981	95.477	0.038872					57	20	3	0	0	0	0.1182	2	23889	23889;23933		28.487	0	1	766040			20797	1798	13738	13880	28269;28270	28269					0.06117304825352221
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8018798828125	2	530.801568	1059.58858	0.42163	0.0002238	0.093029	4.938E-05	0.51466	0.00027318	530.8014981768985	96.017	1.3384	96.056	95.715	97.054	0.039772					129	68	3	0	0	0	0.083504	3	24198	24115;24159;24198		36.044	0	1	1096000			20798	1798	13738	13880	28271;28272;28273	28273					0.06117304825352221
TLMPDVEVI	9	Unmodified	_TLMPDVEVI_					0	0	0			REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF	REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.28436279296875	2	508.770268	1015.52598	0.30298	0.00015414	0.075817	3.8574E-05	0.37879	0.00019272	508.76994032594075	79.115	0.35733	79.115	78.954	79.311	0					21	11	2	0	0	0	0.29576	1	19188	19188		7.2892	0	1	107930	+		20799	8260	13739	13881	28274	28274					0.018841587571614582
TLMPDVEVI	9	Unmodified	_TLMPDVEVI_					0	0	0			REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF	REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	508.770268	1015.52598	0.30298	0.00015414	0.075817	3.8574E-05	0.37879	0.00019272	508.76994032594075	79.115	0.35733	79.115	78.954	79.311	0	-0.026606	-0.00032148	NaN	7.2892	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107930	+		20800	8260	13739	13881							0.018841587571614582
TLNMFRDGEE	10	Unmodified	_TLNMFRDGEE_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2742309570312	2	606.271695	1210.52884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.26	1	104.26	103.76	104.76	0								0	0	0	0.33916	1	26823	26823		1.1933	0.59184	1				20801	6678	13740	13882	28275	28275					-0.06800617855969904
TLNSNWHFF	9	Unmodified	_TLNSNWHFF_					0	0	0			REV__nc|ENSG00000150337|P12314-2|FCGR1A	REV__nc|ENSG00000150337|P12314-2|FCGR1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.272216796875	2	583.274898	1164.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.798	1	22.798	22.298	23.298	0								0	0	0	0.29233	1	2232	2232		0.6015	0.076735	1		+		20802	9626	13741	13883	28276	28276					-0.04044311842312709
TLPFRIFYF	9	Unmodified	_TLPFRIFYF_					0	0	0		ENSG00000139679|ENST00000620633|LPAR6;LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	ENSG00000139679|ENST00000620633|LPAR6	ENSG00000139679|ENST00000620633|LPAR6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.332275390625	2	602.331685	1202.64882	0.35942	0.00021649	0.51169	0.0003082	0.87111	0.0005247	602.331850620657	86.994	0.94006	86.994	86.915	87.855	0					59	37	2	0	0	0	0.1789	1	21605	21605		29.082	16.039	1	364690			20803	2980	13742	13884	28277	28277					0.055597832707235284
TLPFRIFYF	9	Unmodified	_TLPFRIFYF_					0	0	0		ENSG00000139679|ENST00000620633|LPAR6;LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	ENSG00000139679|ENST00000620633|LPAR6	ENSG00000139679|ENST00000620633|LPAR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.56640625	2	602.331685	1202.64882	0.33144	0.00019963	0.35536	0.00021405	0.6868	0.00041368	602.331770169478	87.033	0.69879	87.061	86.859	87.558	0.027573					60	29	3	0	0	0	0.26705	1	21504	21504		15.847	9.124	1	499010			20804	2980	13742	13884	28278	28278					0.055597832707235284
TLPGLLREQRD	11	Unmodified	_TLPGLLREQRD_					0	0	0		ENST00000585077.1_1_17:80397907-80398237:+|nuORF	ENST00000585077.1_1_17:80397907-80398237:+|nuORF	ENST00000585077.1_1_17:80397907-80398237:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	649.3645629882812	2	649.364776	1296.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.48	1	104.48	103.98	104.98	0								0	0	0	0.32586	1	26886	26886		5.7319	4.25	1				20805	7235	13743	13885	28279	28279					0.07850947374822681
TLPGRFYIL	9	Unmodified	_TLPGRFYIL_					0	0	0		ENST00000574380.5_1_16:3533473-3533644:+|nuORF	ENST00000574380.5_1_16:3533473-3533644:+|nuORF	ENST00000574380.5_1_16:3533473-3533644:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8367309570312	2	540.316035	1078.61752	0.51868	0.00028025	0.051714	2.7942E-05	0.57039	0.00030819	540.316121329063	74.969	0.68585	75.013	74.812	75.497	0.044037					39	24	2	0	0	0	0.19376	1	17750	17750		25.399	0	1	241650			20806	7200	13744	13886	28280	28280					0.08135210236650892
TLPGRFYIL	9	Unmodified	_TLPGRFYIL_					0	0	0		ENST00000574380.5_1_16:3533473-3533644:+|nuORF	ENST00000574380.5_1_16:3533473-3533644:+|nuORF	ENST00000574380.5_1_16:3533473-3533644:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	540.316035	1078.61752	0.51113	0.00027617	0.22742	0.00012288	0.73855	0.00039905	540.3161498755965	75.02	0.70753	75.02	74.796	75.504	0	0.0035228	5.9646E-05	NaN	25.399	36	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291810			20807	7200	13744	13886							0.08135210236650892
TLPLPLTSF	9	Unmodified	_TLPLPLTSF_					0	0	0			REV__ENST00000584809.1_1_17:45909557-45911959:+|nuORF	REV__ENST00000584809.1_1_17:45909557-45911959:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7894592285156	2	494.789318	987.564084	0.19652	9.7236E-05	-0.13164	-6.5132E-05	0.064885	3.2104E-05	494.78920160418454	90.006	0.65441	90.04	89.822	90.476	0.034065					39	26	2	0	0	0	0.25979	1	22466	22466		11.64	0	1	930490	+		20808	12559	13745	13887	28281	28281					0.0698041273412855
TLPRIIKI	8	Unmodified	_TLPRIIKI_					0	0	0			REV__nc|ENSG00000111271|Q6JQN1-3|ACAD10	REV__nc|ENSG00000111271|Q6JQN1-3|ACAD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.3287658691406	2	477.328945	952.643337	0.021185	1.0112E-05	0.19309	9.2167E-05	0.21427	0.00010228	477.3289200815804	82.805	0.85008	82.827	82.454	83.304	0.021744					43	29	2	0	0	0	0.53858	1	20140	20140		2.3027	0	1	104470	+		20809	8684	13746	13888	28282	28282					0.16512104478943002
TLPTRPRWE	9	Unmodified	_TLPTRPRWE_					0	0	0		ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF;nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5	ENST00000477136.5_1_2:27275826-27278122:+|nuORF	ENST00000477136.5_1_2:27275826-27278122:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.3191528320312	2	578.317097	1154.61964	0.62372	0.00036071	2.0772	0.0012013	2.7009	0.001562	578.3181098277662	85.265	0.59056	85.265	85.014	85.605	0					27	23	2	0	0	0	0.25979	1	21129	21129		11.64	1.5664	1	446320			20810	952	13747	13889	28283	28283					0.04851638974469097
TLQPKLKRF	9	Unmodified	_TLQPKLKRF_					0	0	0		ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8545532226562	2	565.855858	1129.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.54	1	112.55	112.05	113.05	0.014595								0	0	0	0.27427	1	28714	28714		4.3292	0.38484	1				20811	5380	13748	13890	28284	28284					0.13750276910650427
TLQRMHTTF	9	Unmodified	_TLQRMHTTF_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3303833007812	2	567.789858	1133.56516	0.49837	0.00028297	-0.20367	-0.00011564	0.29471	0.00016733	568.2910778435324	85.759	0.40572	85.784	85.549	85.954	0.025169					23	14	2	0	0	0	0.23598	1	21053	21053		10.824	0	1	120770			20812	1897	13749	13891	28285	28285					0.0037230383138648904
TLRLKLRL	8	Unmodified	_TLRLKLRL_					0	0	0			REV__ENST00000535852.6_1_14:24028960-24035624:-|nuORF	REV__ENST00000535852.6_1_14:24028960-24035624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8526306152344	2	506.853119	1011.69168	-0.12201	-6.184E-05	-0.13344	-6.7634E-05	-0.25545	-0.00012947	506.85295430011547	112.14	1.2356	112.14	111.92	113.16	0					352	141	4	0	0	0	0.53858	1	28660	28660		2.3027	0	1	8677500	+		20813	12383	13750	13892	28286	28286					0.18630598118829766
TLRPDYGD	8	Unmodified	_TLRPDYGD_					0	0	0		HEPACAM|p.R96G|1|0.35|ENSG00000165478|chr11:124924869-124924869|G/C|missense_variant	HEPACAM|p.R96G|1|0.35|ENSG00000165478|chr11:124924869-124924869|G/C|missense_variant	HEPACAM|p.R96G|1|0.35|ENSG00000165478|chr11:124924869-124924869|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.72381591796875	2	468.724707	935.43486	0.32988	0.00015462	-1.1469	-0.00053758	-0.81702	-0.00038296	468.72386381577167	81.075	0.68526	81.099	80.82	81.505	0.023613					68	23	4	0	0	0	0.53118	1	19627	19627		7.2892	0	1	942090			20814	7347	13751	13893	28287	28287					-0.03543968895951366
TLRPSRRRTR	10	Unmodified	_TLRPSRRRTR_					0	0	0		TTC19-PIGL|1|fusion	TTC19-PIGL|1|fusion	TTC19-PIGL|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.6013488769531	3	433.600721	1297.78033	0.36951	0.00016022	0.39295	0.00017039	0.76246	0.0003306	433.6008573156836	96.981	0.61459	97.022	96.824	97.438	0.040855					50	29	3	0	0	0	0.47446	1	24543	24543		0.15932	0	1	147030			20815	13756	13752	13894	28288	28288					0.14335406411191798
TLRQCEVL	8	Unmodified	_TLRQCEVL_					0	0	0		ENST00000496704.1_1_2:130897130-130898075:-|nuORF;ENSG00000163040|ENST00000409856|CCDC74A;ENSG00000152076|ENST00000409943|CCDC74B;nc|ENSG00000163040|Q96AQ1|CCDC74A;nc|ENSG00000152076|Q96LY2|CCDC74B	ENST00000496704.1_1_2:130897130-130898075:-|nuORF	ENST00000496704.1_1_2:130897130-130898075:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2607727050781	2	481.260402	960.506251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.049	1	73.101	72.601	73.601	0.052574								0	0	0	0.38822	1	17182	17182		6.7232	1.9672	1				20816	3483	13753	13895	28289	28289					0.02441827537052177
TLRTQYMKY	9	Unmodified	_TLRTQYMKY_					0	0	0		ARID3C|p.P319Qfs*7|1|0.37|ENSG00000205143|chr9:34622439-34622439|G/-|frameshift_variant;ENSG00000205143|ENST00000378909|ARID3C;nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B;ENSG00000116017|ENST00000263620|ARID3A	ARID3C|p.P319Qfs*7|1|0.37|ENSG00000205143|chr9:34622439-34622439|G/-|frameshift_variant	ARID3C|p.P319Qfs*7|1|0.37|ENSG00000205143|chr9:34622439-34622439|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87786865234375	3	401.877869	1202.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.12	1	24.12	23.62	24.62	0								0	0	0	0.2927	1	2596	2596		0.23584	0	1				20817	50	13754	13896	28290	28290					0.018577436626628696
TLSFLLLIRSF	11	Unmodified	_TLSFLLLIRSF_					0	0	0			REV__ENST00000565280.5_1_15:31198658-31229456:+|nuORF	REV__ENST00000565280.5_1_15:31198658-31229456:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2674255371094	3	437.267463	1308.78056	0.0029368	1.2842E-06	0.71327	0.00031189	0.71621	0.00031317	437.2675737063911	49.271	0.66478	49.348	49.056	49.721	0.076607					31	23	2	0	0	0	0.41713	2	9973	9973;10039		0.40827	0	1	64725	+		20818	10906	13755	13897	28291;28292	28291					0.1385196856786024
TLSIIPIYF	9	Unmodified	_TLSIIPIYF_					0	0	0			REV__ENSG00000176742|ENST00000641270|OR51V1	REV__ENSG00000176742|ENST00000641270|OR51V1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.811767578125	2	533.812793	1065.61103	0.31734	0.0001694	-0.2293	-0.0001224	0.088041	4.6997E-05	533.8126200281382	95.362	0.32147	95.362	95.118	95.439	0					30	13	3	0	0	0	0.11022	1	24096	24096		30.225	0	1	191200	+		20819	10412	13756	13898	28293	28293					0.08085272285279643
TLSNVRVQ	8	Unmodified	_TLSNVRVQ_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.7642822265625	2	458.764166	915.513779	-0.057946	-2.6584E-05	0.18635	8.5492E-05	0.12841	5.8908E-05	458.76438970682625	26.803	0.33267	26.803	26.707	27.04	0					34	23	2	0	0	0	0.53026	1	3378	3378		7.9102	0	1	37719	+		20820	7882	13757	13899	28294	28294					0.05264303129001746
TLSNVRVQ	8	Unmodified	_TLSNVRVQ_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.76446533203125	2	458.764166	915.513779	-0.20987	-9.628E-05	0.31456	0.00014431	0.10469	4.803E-05	458.7643582750938	26.692	0.26665	26.779	26.683	26.949	0.086699					38	20	3	0	0	0	0.50815	1	3211	3211		11.64	1.5664	1	34287	+		20821	7882	13757	13899	28295	28295					0.05264303129001746
TLSNVRVQ	8	Unmodified	_TLSNVRVQ_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	458.764166	915.513779	-0.057946	-2.6584E-05	0.18635	8.5492E-05	0.12841	5.8908E-05	458.76438970682625	26.803	0.33267	26.803	26.707	27.04	0	0.012323	-5.2431E-05	NaN	11.64	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37719	+		20822	7882	13757	13899							0.05264303129001746
TLSNVRVQ	8	Unmodified	_TLSNVRVQ_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	458.764166	915.513779	-0.20987	-9.628E-05	0.31456	0.00014431	0.10469	4.803E-05	458.7643582750938	26.692	0.26665	26.779	26.683	26.949	0.086699	-0.012323	6.5205E-05	NaN	11.64	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34287	+		20823	7882	13757	13899							0.05264303129001746
TLSYNYGGNTI	11	Unmodified	_TLSYNYGGNTI_					0	0	0			REV__sp|P03218|BILF2_EBVB9GlycoproteinBILF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF2PE=1SV=1	REV__sp|P03218|BILF2_EBVB9GlycoproteinBILF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF2PE=1SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2579956054688	2	601.788035	1201.56152	0.38617	0.00023239	3.3458	0.0020135	3.732	0.0022459	601.7901983275719	87.653	0.6237	87.683	87.428	88.052	0.030037					29	22	2	0	0	0	0.30979	1	21671	21671		11.495	2.7493	1	71936	+		20824	12999	13758	13900	28296	28296					-0.03120087461456933
TLTFEAVLD	9	Unmodified	_TLTFEAVLD_					0	0	0			REV__HEATR5B|p.E695D|1|0.19|ENSG00000008869|chr2:37057455-37057455|T/G|missense_variant	REV__HEATR5B|p.E695D|1|0.19|ENSG00000008869|chr2:37057455-37057455|T/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.76593017578125	2	504.76604	1007.51753	0.33948	0.00017136	0.2766	0.00013962	0.61607	0.00031097	504.7662062865511	74.676	0.52104	74.725	74.45	74.972	0.048546					25	18	2	0	0	0	0.21398	1	17708	17708		16.942	0	1	160820	+		20825	12666	13759	13901	28297	28297					0.014069281122033317
TLTGLSLTQV	10	Unmodified	_TLTGLSLTQV_					0	0	0		ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2976684570312	2	516.800414	1031.58628	-0.050345	-2.6018E-05	-2.942	-0.0015204	-2.9923	-0.0015464	516.7993338605075	58.678	0.34436	58.678	58.473	58.818	0					15	11	2	0	0	0	0.31667	1	12946	12946		8.7454	1.4562	1	64992			20826	4685	13760	13902	28298	28298					0.07174592411888625
TLTKEETMR	9	Unmodified	_TLTKEETMR_					0	0	0			REV__ENSG00000184677|ENST00000375647|ZBTB40	REV__ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3088989257812	2	554.786981	1107.55941	0.79856	0.00044303	0.23778	0.00013192	1.0363	0.00057495	554.787030730778	85.653	0.63391	85.679	85.401	86.035	0.025169					54	23	4	0	0	0	0.30005	1	21042	21042		6.7232	0	1	914030	+		20827	10642	13761	13903	28299	28299					0.009931605290830703
TLTLFILGT	9	Unmodified	_TLTLFILGT_					0	0	0			REV__nc|ENSG00000180953|Q9HBF5|ST20	REV__nc|ENSG00000180953|Q9HBF5|ST20	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.796875	2	489.797143	977.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.262	1	94.3	93.8	94.8	0.038086								0	0	0	0.26267	1	23641	23641		6.7232	0	1		+		20828	12856	13762	13904	28300	28300					0.09004699251204329
TLTLKRKKK	9	Unmodified	_TLTLKRKKK_					0	0	0			REV__ENSG00000175595|ENST00000311895|ERCC4	REV__ENSG00000175595|ENST00000311895|ERCC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3858642578125	2	558.384783	1114.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.64	1	119.64	119.14	120.14	0								0	0	0	0.2927	1	30124	30124		0.52476	0	1		+		20829	10382	13763	13905	28301	28301					0.20222538836083004
TLTQIPNQQG	10	Unmodified	_TLTQIPNQQG_					0	0	0		ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.278076171875	2	550.290745	1098.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.152	1	17.236	16.736	17.736	0.083696								0	0	0	0.33892	1	796	796		1.4819	0	1				20830	5135	13764	13906	28302	28302					0.02159636120995856
TLTTLTTG	8	Unmodified	_TLTTLTTG_					0	0	0		nc|ENSG00000054983|P54803-5|GALC;GALC|p.W629Mfs*9|1|0.24|ENSG00000054983|chr14:87939931-87939932|-/T|frameshift_variant;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	nc|ENSG00000054983|P54803-5|GALC	nc|ENSG00000054983|P54803-5|GALC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.227783203125	2	404.226551	806.438549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.793	1	84.793	84.293	85.293	0								0	0	0	0.38822	1	20921	20921		2.5775	0.27475	1				20831	607	13765	13907	28303	28303					0.027587008779050848
TLTVLMLLA	9	Unmodified	_TLTVLMLLA_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.81793212890625	2	487.801371	973.58819	0.091883	4.4821E-05	0.78175	0.00038134	0.87364	0.00042616	487.8017212560605	102.84	0.18475	102.84	102.77	102.96	0					14	10	2	0	0	0	0.2796	1	26419	26419		9.3474	0.75416	1	60446	+		20832	9377	13766	13908	28304	28304					0.10033929896155769
TLTVLMLLA	9	Unmodified	_TLTVLMLLA_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.8179931640625	2	487.801371	973.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.73	1	102.73	102.23	103.23	0								0	0	0	0.24995	1	26374	26374		9.3474	0.75416	1		+		20833	9377	13766	13908	28305	28305					0.10033929896155769
TLTVLMLLA	9	Unmodified	_TLTVLMLLA_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.81781005859375	2	487.801371	973.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.78	1	102.82	102.32	103.32	0.040916								0	0	0	0.24995	1	26225	26225		9.3474	0.75416	1		+		20834	9377	13766	13908	28306	28306					0.10033929896155769
TLTVLMLLA	9	Unmodified	_TLTVLMLLA_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.81817626953125	2	487.801371	973.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.91	1	102.96	102.46	103.46	0.040916								0	0	0	0.2699	1	26268	26268		5.2307	0	1		+		20835	9377	13766	13908	28307	28307					0.10033929896155769
TLVCLATGFFP	11	Unmodified	_TLVCLATGFFP_					0	0	0		nc|ENSG00000211751|P01850|TRBC1	nc|ENSG00000211751|P01850|TRBC1	nc|ENSG00000211751|P01850|TRBC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3564453125	2	584.807185	1167.59982	0.57596	0.00033683	-3.6044	-0.0021079	-3.0285	-0.0017711	584.805056356017	87.603	0.39327	87.633	87.402	87.795	0.030037					22	14	2	0	0	0	0.29854	1	21552	21552		20.415	5.1661	1	143620			20836	7597	13767	13909	28308	28308					0.022721269194789784
TLVEREKCL	9	Unmodified	_TLVEREKCL_					0	0	0		ENST00000524817.5_1_11:9685687-9762009:+|nuORF	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7998657226562	2	545.799891	1089.58523	-0.36242	-0.00019781	-1.5077	-0.0008229	-1.8701	-0.0010207	545.7990708662352	17.165	0.3299	17.165	17.03	17.36	0					95	40	3	0	0	0	0.32831	1	876	876		2.9952	0	1	38594			20837	6983	13768	13910	28309	28309					0.0440205477134441
TLVKFHRSR	9	Unmodified	_TLVKFHRSR_					0	0	0		ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3394165039062	2	572.340907	1142.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.794	1	33.868	33.368	34.368	0.074322								0	0	0	0.28631	1	5305	5305		1.8442	0.36234	1				20838	3250	13769	13911	28310	28310					0.10163337965332175
TLVMIILYS	9	Unmodified	_TLVMIILYS_					0	0	0		ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7871704101562	2	526.806654	1051.59875	0.29782	0.00015689	-2.725	-0.0014356	-2.4272	-0.0012787	527.306671029009	91.876	0.41574	91.912	91.774	92.19	0.03653					24	14	2	0	0	0	0.25174	1	22965	22965		7.2892	2.5332	1	69835			20839	3287	13770	13912	28311	28311					0.07501912550583256
TLVMIILYS	9	Unmodified	_TLVMIILYS_					0	0	0		ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	526.806654	1051.59875	0.46408	0.00024448	-3.0038	-0.0015824	-2.5398	-0.001338	526.8053802628062	91.986	0.37164	91.986	91.793	92.164	0	0.036964	-0.00021102	NaN	7.2892	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45685			20840	3287	13770	13912							0.07501912550583256
TLWEEEEPN	9	Unmodified	_TLWEEEEPN_					0	0	0			REV__USP9X-MRPS31|1|fusion	REV__USP9X-MRPS31|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.835205078125	2	573.751118	1145.48768	0.14821	8.5035E-05	0.89226	0.00051194	1.0405	0.00059697	573.7515702397237	49.405	0.41051	49.482	49.384	49.794	0.076603					16	14	2	0	0	0	0.2446	1	10069	10069		11.64	3.047	1	62155	+		20841	8763	13771	13913	28312	28312					-0.07924055623789172
TLYSFLGPIY	10	Unmodified	_TLYSFLGPIY_					0	0	0			REV__ENSG00000175485|ENST00000311352|OR52W1	REV__ENSG00000175485|ENST00000311352|OR52W1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.73828125	2	587.313158	1172.61176	0.59999	0.00035238	-1.1879	-0.00069768	-0.58792	-0.00034529	587.8131376536938	69.515	0.17044	69.578	69.498	69.669	0.062119					7	5	2	0	0	0	0.31783	1	16132	16132		3.9444	0	1	88851	+		20842	10380	13772	13914	28313	28313					0.032360669343233894
TLYYLDTFI	9	Unmodified	_TLYYLDTFI_					0	0	0			REV__nc|ENSG00000147130|Q14202-2|ZMYM3	REV__nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7689819335938	2	574.79734	1147.58013	0.59422	0.00034155	-1.6885	-0.00097054	-1.0943	-0.00062899	574.7962849190942	92.913	0.54884	92.913	92.608	93.157	0					31	20	2	0	0	0	0.2446	1	23395	23395		11.64	0.81637	1	115690	+		20843	9560	13773	13915	28314	28314					0.012240741803680066
TMASVPALQL	10	Unmodified	_TMASVPALQL_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7816162109375	2	515.78371	1029.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.789	1	77.824	77.324	78.324	0.034485								0	0	0	0.17707	1	18631	18631		32.786	0.4802	1				20844	5458	13774	13916	28315	28315					0.039272673683626635
TMFGEFILL	9	Unmodified	_TMFGEFILL_					0	0	0		ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7832641601562	2	535.783179	1069.5518	0.61875	0.00033151	-0.03673	-1.9679E-05	0.58202	0.00031184	535.7830008589805	98.422	0.67164	98.422	98.189	98.861	0					97	35	4	0	0	0	0.21398	2	25054	25054;25098		16.942	0	1	954650			20845	4782	13775	13917	28316;28317	28316					0.019810529994401804
TMFGEFILL	9	Unmodified	_TMFGEFILL_					0	0	0		ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.783447265625	2	535.783179	1069.5518	0.55415	0.0002969	-0.027251	-1.4601E-05	0.5269	0.0002823	535.7830908324864	99.438	0.69878	99.438	99.044	99.743	0					125	41	4	0	0	0	0.083504	2	25364	25323;25364		36.044	0	1	2000200			20846	4782	13775	13917	28318;28319	28319					0.019810529994401804
TMFGEFILL	9	Unmodified	_TMFGEFILL_					0	0	0		ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7833862304688	2	535.783179	1069.5518	0.7943	0.00042557	-0.21994	-0.00011784	0.57436	0.00030773	535.7829095166373	98.444	0.66591	98.486	98.168	98.834	0.041939					80	35	3	0	0	0	0.1182	1	24893	24893		28.487	0	1	741920			20847	4782	13775	13917	28320	28320					0.019810529994401804
TMFGEFILL	9	Unmodified	_TMFGEFILL_					0	0	0		ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7833862304688	2	535.783179	1069.5518	0.76389	0.00040928	-0.15534	-8.3227E-05	0.60855	0.00032605	535.7829871387543	99.422	0.79297	99.465	98.998	99.791	0.042839					157	56	4	0	0	0	0.045114	3	25191	25150;25191;25233		44.407	0	1	2741800			20848	4782	13775	13917	28321;28322;28323	28322					0.019810529994401804
TMSLTARKRA	10	Unmodified	_TMSLTARKRA_					0	0	0		ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2791137695312	2	567.824232	1133.63391	0.29187	0.00016573	-3.2647	-0.0018538	-2.9728	-0.001688	568.3234181555085	61.356	0.19993	61.356	61.218	61.418	0					13	6	3	0	0	0	0.31616	1	13769	13769		10.074	5.7447	1	108000			20849	4316	13776	13918	28324	28324					0.07243968131115253
TMSRQRLKI	9	Unmodified	_TMSRQRLKI_					0	0	0			REV__ENST00000356956.5_2_6:160467565-160467610:+|nuORF	REV__ENST00000356956.5_2_6:160467565-160467610:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2791137695312	2	566.8346	1131.65465	0.31038	0.00017594	1.1549	0.00065465	1.4653	0.00083059	566.8352268617095	61.117	0.53289	61.117	60.885	61.418	0					42	18	3	0	0	0	0.25051	1	13769	13769		7.9102	1.7044	1	254450	+		20850	11511	13777	13919	28325	28325					0.09408558510767762
TNAQIQINDKF	11	Unmodified	_TNAQIQINDKF_					0	0	0			REV__tr|U7T3K5|U7T3K5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00441PE=4SV=1	REV__tr|U7T3K5|U7T3K5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00441PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	430.89093017578125	3	431.226215	1290.65681	0.58026	0.00025022	-2.111	-0.00091034	-1.5308	-0.00066011	431.2252649793523	60.774	0.4982	60.774	60.587	61.086	0					22	17	2	0	0	0	0.31087	1	13634	13634		2.8433	0.21205	1	187740	+		20851	13283	13778	13920	28326	28326					0.023112657295769168
TNAVQILE	8	Unmodified	_TNAVQILE_					0	0	0		ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	444.2450256347656	2	444.245275	886.475997	0.59537	0.00026449	1.2942	0.00057494	1.8896	0.00083943	444.245796114447	99.795	1.2965	99.795	99.433	100.73	0					142	72	2	0	0	0	0.53557	1	25473	25473		4.3292	0	1	21068000			20852	5305	13779	13921	28327	28327					0.02821792143527091
TNFKGRTLLE	10	Unmodified	_TNFKGRTLLE_					0	0	0			REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF	REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8306274414062	2	589.830037	1177.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.9	1	30.974	30.474	31.474	0.073782								0	0	0	0.34018	1	4441	4441		0	0	1		+		20853	9759	13780	13922	28328	28328					0.06380488426134434
TNHHFLML	8	Unmodified	_TNHHFLML_					0	0	0			REV__ENST00000369144.7_1_10:120795412-120795463:-|nuORF	REV__ENST00000369144.7_1_10:120795412-120795463:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7420349121094	2	506.755287	1011.49602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.463	1	33.463	32.963	33.963	0								0	0	0	0.38822	1	5325	5325		2.3027	0	1		+		20854	11579	13781	13923	28329	28329					-0.009267353975019432
TNIYRKPGI	9	Unmodified	_TNIYRKPGI_					0	0	0		TG|p.H2182N|1|0.2|ENSG00000042832|chr8:133013746-133013746|C/A|missense_variant	TG|p.H2182N|1|0.2|ENSG00000042832|chr8:133013746-133013746|C/A|missense_variant	TG|p.H2182N|1|0.2|ENSG00000042832|chr8:133013746-133013746|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7625122070312	2	531.308741	1060.60293	0.31062	0.00016503	-0.042956	-2.2823E-05	0.26766	0.00014221	531.3088235967127	36.413	0.29435	36.495	36.34	36.634	0.081715					15	12	2	0	0	0	0.25875	1	6130	6130		1.8442	0	1	29262			20855	13430	13782	13924	28330	28330					0.07505138088527019
TNKFLPGLP	9	Unmodified	_TNKFLPGLP_					0	0	0			REV__ENST00000541377.5_1_2:122097159-122097282:-|nuORF	REV__ENST00000541377.5_1_2:122097159-122097282:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7870178222656	2	493.78711	985.559667	0.049667	2.4525E-05	-0.67741	-0.0003345	-0.62775	-0.00030997	493.78667261632756	109.95	0.1021	109.95	109.89	109.99	0					23	13	2	0	0	0	0.32112	1	28262	28262		3.9444	0	1	652250	+		20856	12401	13783	13925	28331	28331					0.06630948311226348
TNKHFTDV	8	Unmodified	_TNKHFTDV_					0	0	0		tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1	tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1	tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2777404785156	2	481.240524	960.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.63	1	103.67	103.17	104.17	0.03791								0	0	0	0.38822	1	26475	26475		2.3027	0	1				20857	13511	13784	13926	28332	28332					-0.015319761419959832
TNLRDLPVQ	9	Unmodified	_TNLRDLPVQ_					0	0	0		tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2954711914062	2	528.29583	1054.57711	-0.18357	-9.698E-05	-0.18109	-9.5669E-05	-0.36466	-0.00019265	528.2956375089752	26.291	0.32771	26.291	26.139	26.466	0					69	28	4	0	0	0	0.32112	1	3206	3206		3.9444	0	1	48502			20858	13700	13785	13927	28333	28333					0.05200243846206831
TNLWQEVDK	9	Unmodified	_TNLWQEVDK_					0	0	0			REV__KRT39|p.F287L|1|0.08|ENSG00000196859|chr17:40962411-40962411|G/C|missense_variant	REV__KRT39|p.F287L|1|0.08|ENSG00000196859|chr17:40962411-40962411|G/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7836303710938	2	566.785296	1131.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.347	1	28.347	27.847	28.847	0								0	0	0	0.28807	1	3811	3811		1.4819	0	1		+		20859	12690	13786	13928	28334	28334					-0.0044776625329632225
TNPEANEM	8	Unmodified	_TNPEANEM_					0	0	0			REV__ENST00000577627.1_1_18:5002795-5003119:-|nuORF	REV__ENST00000577627.1_1_18:5002795-5003119:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.869873046875	2	453.1871	904.359646	-0.045918	-2.081E-05	-0.38912	-0.00017635	-0.43504	-0.00019715	453.186808061974	26.907	0.6578	26.907	26.627	27.284	0					100	44	3	0	0	0	0.3576	1	3345	3345		0.79363	0	1	116440	+		20860	12539	13787	13929	28335	28335					-0.09635894418681801
TNSDIVETLR	10	Unmodified	_TNSDIVETLR_					0	0	0		ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;ENSG00000068305|ENST00000557942|MEF2A	ENST00000558983.5_1_15:100173318-100211695:+|nuORF	ENST00000558983.5_1_15:100173318-100211695:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3011474609375	2	574.30131	1146.58807	-0.17337	-9.9569E-05	-0.50506	-0.00029006	-0.67844	-0.00038963	574.3009778634123	44.373	0.25847	44.373	44.243	44.502	0					20	8	3	0	0	0	0.090608	1	8604	8604		46.475	23.817	1	93615			20861	724	13788	13930	28336	28336					0.02063601429836126
TNSDIVETLR	10	Unmodified	_TNSDIVETLR_					0	0	0		ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;ENSG00000068305|ENST00000557942|MEF2A	ENST00000558983.5_1_15:100173318-100211695:+|nuORF	ENST00000558983.5_1_15:100173318-100211695:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.30131	1146.58807	0.004851	2.7859E-06	-0.63281	-0.00036342	-0.62795	-0.00036064	574.3009185526889	44.259	0.37939	44.348	44.186	44.566	0.088924	-0.012623	-7.979E-05	NaN	46.475	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71649			20862	724	13788	13930							0.02063601429836126
TNTYLSGLL	9	Unmodified	_TNTYLSGLL_					0	0	0			REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.26629638671875	2	491.266207	980.517862	0.18126	8.9045E-05	0.29939	0.00014708	0.48065	0.00023613	491.26628998891545	52.637	0.39236	52.637	52.396	52.788	0					18	13	2	0	0	0	0.29334	1	11131	11131		7.609	0	1	69565	+		20863	12002	13789	13931	28337	28337					0.026823478320466165
TNTYLSGLL	9	Unmodified	_TNTYLSGLL_					0	0	0			REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	491.266207	980.517862	0.18126	8.9045E-05	0.29939	0.00014708	0.48065	0.00023613	491.26628998891545	52.637	0.39236	52.637	52.396	52.788	0	-0.0066781	5.5839E-05	NaN	7.609	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69565	+		20864	12002	13789	13931							0.026823478320466165
TNTYLSGLL	9	Unmodified	_TNTYLSGLL_					0	0	0			REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	491.266207	980.517862	0.28545	0.00014023	0.1605	7.8849E-05	0.44595	0.00021908	491.26625913914035	52.583	0.30519	52.65	52.466	52.772	0.067173	0.0066781	-8.0624E-05	NaN	7.609	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59069	+		20865	12002	13789	13931							0.026823478320466165
TPAAGEKQL	9	Unmodified	_TPAAGEKQL_					0	0	0		nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24	nc|ENSG00000008838|O75448-2|MED24	nc|ENSG00000008838|O75448-2|MED24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.7502746582031	2	457.750724	913.486896	-0.1204	-5.5114E-05	-0.58356	-0.00026713	-0.70396	-0.00032224	457.7502793208156	24.335	0.30811	24.434	24.304	24.613	0.099739					47	29	2	0	0	0	0.32831	1	2527	2527		2.9952	0.69251	1	35017			20866	401	13790	13932	28338	28338					0.026691945178072274
TPAAGEKQL	9	Unmodified	_TPAAGEKQL_					0	0	0		nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24	nc|ENSG00000008838|O75448-2|MED24	nc|ENSG00000008838|O75448-2|MED24	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	457.750724	913.486896	-0.10688	-4.8923E-05	-0.70528	-0.00032284	-0.81216	-0.00037177	457.75022990048603	24.518	0.33452	24.518	24.351	24.686	0	0.041778	-5.3976E-05	NaN	2.9952	48	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35897			20867	401	13790	13932							0.026691945178072274
TPAPPTHAL	9	Unmodified	_TPAPPTHAL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.7477722167969	2	452.747985	903.481417	0.25297	0.00011453	-0.095649	-4.3305E-05	0.15732	7.1225E-05	452.7478049243437	35.698	0.59797	35.698	35.479	36.077	0					41	22	3	0	0	0	0.19398	1	6007	6007		19.257	5.3509	1	73863			20868	4101	13791	13933	28339	28339					0.025815157259899024
TPAPPTHAL	9	Unmodified	_TPAPPTHAL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.747802734375	2	452.747985	903.481417	0.060395	2.7344E-05	-0.30145	-0.00013648	-0.24106	-0.00010914	452.7478484589721	35.623	0.59539	35.702	35.483	36.079	0.078831					35	21	2	0	0	0	0.23216	1	5856	5856		14.838	4.0143	1	60013			20869	4101	13791	13933	28340	28340					0.025815157259899024
TPAPVEKSPA	10	Unmodified	_TPAPVEKSPA_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7715148925781	2	498.771657	995.528761	-0.028982	-1.4456E-05	0.025502	1.272E-05	-0.0034799	-1.7357E-06	498.7715469573885	26.23	0.26622	26.322	26.196	26.462	0.091507					39	24	2	0	0	0	0.46083	1	3075	3075		2.7352	0	1	25737			20870	4971	13792	13934	28341	28341					0.03081750206331435
TPAPVEKSPA	10	Unmodified	_TPAPVEKSPA_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	498.771657	995.528761	-0.11755	-5.863E-05	-0.021627	-1.0787E-05	-0.13917	-6.9417E-05	498.7715581504063	26.318	0.36294	26.318	26.177	26.54	0	-0.0018513	-2.7109E-05	NaN	2.7352	51	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31938			20871	4971	13792	13934							0.03081750206331435
TPARDYNNSY	10	Unmodified	_TPARDYNNSY_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.7682495117188	2	600.767634	1199.52072	0.14076	8.4564E-05	1.6655	0.0010006	1.8062	0.0010851	600.76856167948	105.3	0.37627	105.3	105.13	105.51	0					67	39	2	0	0	0	0.44938	1	27096	27096		4.897	0	1	137150			20872	1304	13793	13935	28342	28342					-0.0710642878109411
TPARHSLGGG	10	Unmodified	_TPARHSLGGG_					0	0	0			REV__ENSG00000183128|ENST00000369783|CALHM3	REV__ENSG00000183128|ENST00000369783|CALHM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.75189208984375	2	476.75159	951.488627	-0.088426	-4.2157E-05	1.1791	0.00056212	1.0906	0.00051996	476.75194858769856	51.86	0.62329	51.86	51.682	52.305	0					38	21	3	0	0	0	0.31595	1	10876	10876		11.495	3.5846	1	177620	+		20873	10589	13794	13936	28343	28343					0.010942483264443581
TPCRQWTAC	9	Unmodified	_TPCRQWTAC_					0	0	0			REV__nc|ENSG00000134222|Q6PGN9-3|PSRC1	REV__nc|ENSG00000134222|Q6PGN9-3|PSRC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2345581054688	2	533.233861	1064.45317	0.45592	0.00024311	1.0291	0.00054878	1.4851	0.00079189	533.2343300228223	94.321	0.60121	94.321	94.084	94.685	0					86	27	5	0	0	0	0.33978	1	23797	23797		1.4819	1.4819	1	404560	+		20874	12795	13795	13937	28344	28344					-0.07647873517248627
TPDEDDHLL	9	Unmodified	_TPDEDDHLL_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B;BCL11B|p.V274Wfs*7|1|0.32|ENSG00000127152|chr14:99176016-99176016|C/-|frameshift_variant	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2398681640625	2	527.738011	1053.46147	-0.093541	-4.9365E-05	0.13014	6.868E-05	0.036599	1.9314E-05	527.7380395013237	43.194	1.1393	43.284	42.838	43.977	0.089764					58	28	4	0	0	0	0.22344	1	8185	8185		15.847	3.3156	1	176430			20875	2357	13796	13938	28345	28345					-0.06312324795294444
TPDEDDHLL	9	Unmodified	_TPDEDDHLL_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B;BCL11B|p.V274Wfs*7|1|0.32|ENSG00000127152|chr14:99176016-99176016|C/-|frameshift_variant	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.738011	1053.46147	-0.15649	-8.2586E-05	-0.34447	-0.00018179	-0.50096	-0.00026438	527.7377969191473	43.292	1.4128	43.292	42.857	44.269	0	0.0042555	-0.00015043	NaN	15.847	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203560			20876	2357	13796	13938							-0.06312324795294444
TPDEIDHVF	9	Unmodified	_TPDEIDHVF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.7511596679688	2	536.750921	1071.48729	0.67449	0.00036203	-0.26284	-0.00014108	0.41165	0.00022095	536.750845917015	54.248	1.5972	54.248	53.783	55.38	0					155	63	5	0	0	0	2.2102000000000002E-41	2	11625	11579;11625		257.83	209.48	1	5784400			20877	4532	13797	13939	28346;28347	28347					-0.04559430552990307
TPDEIDHVF	9	Unmodified	_TPDEIDHVF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.7511596679688	2	536.750921	1071.48729	0.77325	0.00041504	-0.20894	-0.00011215	0.56432	0.0003029	536.7507923290162	54.221	1.1757	54.286	54.04	55.216	0.065128					143	53	5	0	0	0	3.8843E-24	3	11465	11423;11465;11510		225.63	177.29	1	4455000			20878	4532	13797	13939	28348;28349;28350	28349					-0.04559430552990307
TPDGIDLRL	9	Unmodified	_TPDGIDLRL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.27734375	2	500.277106	998.53966	0.50951	0.0002549	0.25047	0.0001253	0.75998	0.0003802	500.2772061852487	60.252	0.629	60.252	60.091	60.72	0					36	22	2	0	0	0	0.095436	1	13443	13443		33.445	7.1768	1	155250			20879	1654	13798	13940	28351	28351					0.04033152580609567
TPDGIDLRL	9	Unmodified	_TPDGIDLRL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	500.277106	998.53966	0.22174	0.00011093	0.75445	0.00037744	0.97619	0.00048837	500.2775883319673	60.238	0.59029	60.311	60.066	60.657	0.073421	0.029913	0.00020218	NaN	33.445	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151190			20880	1654	13798	13940							0.04033152580609567
TPDGTEKGDFL	11	Unmodified	_TPDGTEKGDFL_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.280029296875	2	590.280043	1178.54553	-0.059678	-3.5227E-05	0.15312	9.0383E-05	0.093441	5.5157E-05	590.2799277532355	44.26	0.59863	44.26	44.034	44.632	0					48	20	3	0	0	0	0.021544	3	8597	8550;8597;8647		102.55	66.042	1	273270			20881	3728	13799	13941	28352;28353;28354	28353					-0.03659793698375324
TPDGTEKGDFL	11	Unmodified	_TPDGTEKGDFL_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2801513671875	2	590.280043	1178.54553	0.15076	8.8991E-05	-0.089144	-5.262E-05	0.061617	3.6371E-05	590.2799443559414	44.162	0.62028	44.251	43.977	44.597	0.088924					51	20	4	0	0	0	0.082478	2	8444	8396;8444		49.742	30.485	1	204540			20882	3728	13799	13941	28355;28356	28356					-0.03659793698375324
TPDKRHAVL	9	Unmodified	_TPDKRHAVL_					0	0	0			REV__ENSG00000118363|ENST00000263672|SPCS2	REV__ENSG00000118363|ENST00000263672|SPCS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.2722778320312	2	518.79854	1035.58253	-0.10893	-5.6511E-05	0.034264	1.7776E-05	-0.074663	-3.8735E-05	518.7986900860143	28.634	0.87689	28.634	28.423	29.3	0					95	46	4	0	0	0	0.25281	1	4062	4062		6.7232	0	1	260990	+		20883	8840	13800	13942	28357	28357					0.06615967428706426
TPDLGERIAL	10	Unmodified	_TPDLGERIAL_					0	0	0		nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	nc|ENSG00000153885|Q96SI1-2|KCTD15	nc|ENSG00000153885|Q96SI1-2|KCTD15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.280029296875	2	542.803488	1083.59242	0.45643	0.00024775	0.36407	0.00019762	0.8205	0.00044537	542.8033170991372	57.41	0.71227	57.41	57.028	57.74	0					50	25	3	0	0	0	0.25711	1	12524	12524		34.222	16.779	1	354570			20884	3535	13801	13943	28358	28358					0.053971106434119065
TPDMQHELI	9	Oxidation (M)	_TPDM(Oxidation (M))QHELI_		TPDM(1)QHELI		TPDM(42)QHELI	0	0	1			REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2593383789062	2	550.258056	1098.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.803	1	75.803	75.303	76.303	0								0	0	0	0.072376	1	18180	18180		41.84	21.386	1		+		20885	9535	13802	13944	28359	28359		341			-0.04375101396340142
TPDMQHELI	9	Oxidation (M)	_TPDM(Oxidation (M))QHELI_		TPDM(1)QHELI		TPDM(54)QHELI	0	0	1			REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2591552734375	2	550.258056	1098.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.922	1	75.922	75.422	76.422	0								0	0	0	0.036979	1	18216	18216		53.833	17.706	1		+		20886	9535	13802	13944	28360	28360		341			-0.04375101396340142
TPDMQHELI	9	Oxidation (M)	_TPDM(Oxidation (M))QHELI_		TPDM(1)QHELI		TPDM(59)QHELI	0	0	1			REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.260009765625	2	550.258056	1098.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.046	1	76.046	75.546	76.546	0								0	0	0	0.027871	1	18255	18255		58.679	25.893	1		+		20887	9535	13802	13944	28361	28361		341			-0.04375101396340142
TPDMQHELI	9	Unmodified	_TPDMQHELI_					0	0	0			REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2615356445312	2	542.260599	1082.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.266	1	84.266	83.766	84.766	0								0	0	0	0.096229	1	20762	20762		34.402	15.145	1		+		20888	9535	13802	13945	28362	28362					-0.03130797533731311
TPDMQHELI	9	Unmodified	_TPDMQHELI_					0	0	0			REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2615356445312	2	542.260599	1082.50665	0.73241	0.00039716	0.87095	0.00047228	1.6034	0.00086944	542.2612999929369	84.228	0.45021	84.228	83.868	84.319	0					35	19	3	0	0	0	0.15403	1	20762	20762		34.402	15.145	1	324940	+		20889	9535	13802	13945	28363	28363					-0.03130797533731311
TPDMQHELI	9	Unmodified	_TPDMQHELI_					0	0	0			REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2616577148438	2	542.260599	1082.50665	0.48034	0.00026047	1.5939	0.00086431	2.0742	0.0011248	542.2615308051049	84.23	0.43256	84.252	83.889	84.321	0.021744					37	15	3	0	0	0	0.11547	1	20602	20602		29.082	7.5446	1	500640	+		20890	9535	13802	13945	28364	28364					-0.03130797533731311
TPDSDIFTF	9	Unmodified	_TPDSDIFTF_					0	0	0		nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1;ENSG00000011454|ENST00000373647|RABGAP1	nc|ENSG00000188394|Q9Y3P9-3|RABGAP1	nc|ENSG00000188394|Q9Y3P9-3|RABGAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.3284301757812	2	521.740022	1041.46549	0.21188	0.00011055	0.55216	0.00028808	0.76404	0.00039863	521.7403748089051	79.098	0.34454	79.127	78.934	79.279	0.028389					13	11	2	0	0	0	0.23598	1	19025	19025		15.847	4.2069	1	55823			20891	434	13803	13946	28365	28365					-0.05358235301559944
TPDVKIPN	8	Unmodified	_TPDVKIPN_					0	0	0			REV__PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	REV__PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.2477111816406	2	442.247818	882.481082	0.045931	2.0313E-05	0.55213	0.00024418	0.59807	0.00026449	442.24794752845725	32.919	0.69208	32.919	32.658	33.35	0					74	28	4	0	0	0	0.53614	1	5242	5242		3.9444	0	1	302760	+		20892	10312	13804	13947	28366	28366					0.035140960061426085
TPDVRLRT	8	Unmodified	_TPDVRLRT_					0	0	0			REV__ENST00000578303.1_1_17:16470846-16472440:-|nuORF	REV__ENST00000578303.1_1_17:16470846-16472440:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.277099609375	2	479.277441	956.540328	0.11112	5.3259E-05	0.046609	2.2339E-05	0.15773	7.5598E-05	479.277319851746	81.839	0.92114	81.861	81.503	82.424	0.021866					72	33	3	0	0	0	0.53423	1	19989	19989		5.2307	0	1	258740	+		20893	12541	13805	13948	28367	28367					0.06031992020336929
TPDWAERQL	9	Unmodified	_TPDWAERQL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.2777099609375	2	558.277638	1114.54072	0.3992	0.00022286	0.051477	2.8738E-05	0.45067	0.0002516	558.2775842951602	48.09	1.182	48.09	47.763	48.945	0					76	40	3	0	0	0	0.002259	3	9714	9714;9764;9812		114.19	87.303	1	466220			20894	4780	13806	13949	28368;28369;28370	28368					-0.01196633050494711
TPDWAERQL	9	Unmodified	_TPDWAERQL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2775268554688	2	558.277638	1114.54072	0.65538	0.00036589	-0.18237	-0.00010182	0.47301	0.00026407	558.2773703596516	47.992	1.1183	48.072	47.785	48.903	0.080029					65	38	3	0	0	0	0.0039507	4	9592	9549;9592;9632;9705		103.82	76.94	1	386770			20895	4780	13806	13949	28371;28372;28373;28374	28372					-0.01196633050494711
TPEDREVRL	9	Unmodified	_TPEDREVRL_					0	0	0		nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1	nc|ENSG00000183527|O95456-2|PSMG1	nc|ENSG00000183527|O95456-2|PSMG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7962646484375	2	557.796195	1113.57784	0.0022189	1.2377E-06	0.077952	4.3481E-05	0.08017	4.4719E-05	557.79606865783	30.746	0.35966	30.746	30.55	30.909	0					37	18	3	0	0	0	0.32614	1	4514	4514		3.2813	0	1	38569			20896	4927	13807	13950	28375	28375					0.02559038495292043
TPEEGAQAL	9	Unmodified	_TPEEGAQAL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.22442626953125	2	458.224539	914.434526	0.39379	0.00018044	-0.50478	-0.0002313	-0.11099	-5.086E-05	458.2242156800233	38.617	0.41911	38.617	38.362	38.781	0					28	14	3	0	0	0	0.24021	1	6861	6861		13.906	0	1	78200			20897	1181	13808	13951	28376	28376					-0.026113886158100286
TPEEGAQAL	9	Unmodified	_TPEEGAQAL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	458.224539	914.434526	0.24985	0.00011449	0.007519	3.4454E-06	0.25737	0.00011793	458.2244274199835	38.495	0.43692	38.581	38.358	38.795	0.08688	-0.017981	0.00034876	NaN	13.906	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54264			20898	1181	13808	13951							-0.026113886158100286
TPEGHAVGL	9	Unmodified	_TPEGHAVGL_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7298889160156	2	440.729792	879.445031	0.087291	3.8472E-05	0.21326	9.3992E-05	0.30055	0.00013246	440.7297881409395	33.363	0.88298	33.363	33.175	34.058	0					57	32	3	0	0	0	0.021119	1	5290	5290		57.471	28.985	1	120470			20899	7672	13809	13952	28377	28377					0.00048638829287028784
TPEGHAVGL	9	Unmodified	_TPEGHAVGL_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7300720214844	2	440.729792	879.445031	-0.13393	-5.9028E-05	0.64847	0.0002858	0.51454	0.00022677	440.7299733528842	33.327	0.59394	33.402	33.146	33.74	0.074322					52	23	3	0	0	0	0.065541	1	5148	5148		39.957	23.015	1	109990			20900	7672	13809	13952	28378	28378					0.00048638829287028784
TPEKSVVSL	9	Unmodified	_TPEKSVVSL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.27398681640625	2	480.274032	958.533512	-0.50606	-0.00024305	0.59504	0.00028578	0.08898	4.2735E-05	480.27417445602623	40.463	0.47785	40.463	40.237	40.714	0					43	16	3	0	0	0	0.062017	1	7450	7450		40.725	13.096	1	255400			20901	1359	13810	13953	28379	28379					0.052586343491157095
TPEKSVVSL	9	Unmodified	_TPEKSVVSL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.27386474609375	2	480.274032	958.533512	-0.37127	-0.00017831	0.42722	0.00020518	0.055949	2.6871E-05	480.2740623146011	40.366	0.46014	40.456	40.257	40.717	0.089645					42	16	3	0	0	0	0.064247	2	7252	7252;7291		40.239	6.7352	1	215520			20902	1359	13810	13953	28380;28381	28380					0.052586343491157095
TPEMQYKGQM	10	Unmodified	_TPEMQYKGQM_					0	0	0			REV__ENST00000469087.1_1_21:36206419-36206857:-|nuORF	REV__ENST00000469087.1_1_21:36206419-36206857:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7884521484375	2	606.773016	1211.53148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.26	1	97.301	96.801	97.801	0.040855								0	0	0	0.33905	1	24559	24559		1.3295	0.13619	1		+		20903	12018	13811	13954	28382	28382					-0.06582485722674392
TPEQQAAIL	9	Unmodified	_TPEQQAAIL_					0	0	0		ENSG00000213928|ENST00000396864|IRF9;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF	ENSG00000213928|ENST00000396864|IRF9	ENSG00000213928|ENST00000396864|IRF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.763916015625	2	485.763832	969.513111	-0.062982	-3.0594E-05	-0.0079986	-3.8854E-06	-0.07098	-3.448E-05	485.76394406549974	51.121	1.2776	51.121	50.827	52.104	0					119	43	4	0	0	0	0.017478	3	10703	10661;10703;10752		60.074	24.936	1	6588500			20904	5559	13812	13955	28383;28384;28385	28384					0.027134636892810704
TPEQQAAIL	9	Unmodified	_TPEQQAAIL_					0	0	0		ENSG00000213928|ENST00000396864|IRF9;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF	ENSG00000213928|ENST00000396864|IRF9	ENSG00000213928|ENST00000396864|IRF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7640075683594	2	485.763832	969.513111	0.050283	2.4425E-05	0.0032767	1.5917E-06	0.053559	2.6017E-05	485.76387229996345	51.076	1.0388	51.146	50.854	51.892	0.069874					117	39	5	0	0	0	0.020768	3	10498	10498;10546;10588		57.722	24.936	1	5583000			20905	5559	13812	13955	28386;28387;28388	28386					0.027134636892810704
TPFHEIMSL	9	Oxidation (M)	_TPFHEIM(Oxidation (M))SL_		TPFHEIM(1)SL		TPFHEIM(110)SL	0	0	1		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7656860351562	2	545.765517	1089.51648	0.30931	0.00016881	0.15384	8.3962E-05	0.46315	0.00025277	545.7654664068701	53.42	1.2725	53.42	52.945	54.218	0					113	48	4	0	0	0	0.0027323	2	11319	11277;11319		111.29	77.185	1	571030			20906	3642	13813	13956	28389;28390	28390		225			-0.02469609528361616
TPFHEIMSL	9	Oxidation (M)	_TPFHEIM(Oxidation (M))SL_		TPFHEIM(1)SL		TPFHEIM(100)SL	0	0	1		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7656860351562	2	545.765517	1089.51648	0.45944	0.00025075	0.022313	1.2178E-05	0.48176	0.00026293	545.7654861023916	55.6	1.4524	55.6	55.059	56.512	0					116	52	3	0	0	0	0.0042692	3	12047	11938;12047;12092		99.799	57.704	1	844790			20907	3642	13813	13956	28391;28392;28393	28392		225			-0.02469609528361616
TPFHEIMSL	9	Oxidation (M)	_TPFHEIM(Oxidation (M))SL_		TPFHEIM(1)SL		TPFHEIM(75)SL	0	0	1		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7655029296875	2	545.765517	1089.51648	0.416	0.00022704	0.022468	1.2262E-05	0.43846	0.0002393	545.7653386212526	53.31	0.78097	53.375	53.058	53.838	0.06543					96	37	3	0	0	0	0.0074933	2	11176	11129;11176		74.929	40.827	1	478460			20908	3642	13813	13956	28394;28395	28395		225			-0.02469609528361616
TPFHEIMSL	9	Oxidation (M)	_TPFHEIM(Oxidation (M))SL_		TPFHEIM(1)SL		TPFHEIM(100)SL	0	0	1		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7657470703125	2	545.765517	1089.51648	0.39413	0.0002151	0.10368	5.6586E-05	0.49781	0.00027169	545.7654828516763	55.442	1.7384	55.507	54.887	56.625	0.065128					123	66	3	0	0	0	0.003963	4	11895	11818;11846;11895;11945		103.75	46.859	1	610800			20909	3642	13813	13956	28396;28397;28398;28399	28398		225			-0.02469609528361616
TPFHEIMSL	9	Unmodified	_TPFHEIMSL_					0	0	0		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7683715820312	2	537.76806	1073.52157	0.55619	0.0002991	-0.54132	-0.00029111	0.014874	7.9987E-06	537.7676610329091	63.734	0.82127	63.734	63.474	64.296	0					59	28	3	0	0	0	0.14091	1	14550	14550		25.399	3.6527	1	426710			20910	3642	13813	13957	28400	28400					-0.012253056657300476
TPFKLYSG	8	Unmodified	_TPFKLYSG_					0	0	0			REV__nc|ENSG00000171310|Q9NPF2-2|CHST11	REV__nc|ENSG00000171310|Q9NPF2-2|CHST11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.5792236328125	2	456.744911	911.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.612	1	72.612	72.112	73.112	0								0	0	0	0.38182	1	17202	17202		24.674	10.092	1		+		20911	10250	13814	13958	28401	28401					0.01598997494465948
TPFLKVEPF	9	Unmodified	_TPFLKVEPF_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ASNS|p.A171V|1|0.39|ENSG00000070669|chr7:97859374-97859374|G/A|missense_variant	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.30224609375	2	539.302593	1076.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.53	1	104.53	104.03	105.03	0								0	0	0	0.27613	1	26900	26900		3.9444	0	1				20912	761	13815	13959	28402	28402					0.0554010162547911
TPFLYDLVM	9	Oxidation (M)	_TPFLYDLVM(Oxidation (M))_		TPFLYDLVM(1)		TPFLYDLVM(100)	0	0	1		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7784423828125	2	557.778093	1113.54163	0.83716	0.00046695	-0.26471	-0.00014765	0.57244	0.0003193	557.7778387135215	84.986	0.84918	84.986	84.633	85.482	0					91	33	3	0	0	0	0.0042542	3	20971	20917;20971;21021		100.37	68.255	1	1451600			20913	1292;3833	13816	13960	28403;28404;28405	28404		78			-0.010595547257935323
TPFLYDLVM	9	Oxidation (M)	_TPFLYDLVM(Oxidation (M))_		TPFLYDLVM(1)		TPFLYDLVM(93)	0	0	1		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7783203125	2	557.778093	1113.54163	0.24157	0.00013474	0.46308	0.00025829	0.70465	0.00039304	557.7781704800947	86.596	1.6174	86.596	86.15	87.767	0					174	64	3	0	0	0	0.004452	5	21440	21440;21489;21535;21578;21624		92.822	65.938	1	2688700			20914	1292;3833	13816	13960	28406;28407;28408;28409;28410	28406		78			-0.010595547257935323
TPFLYDLVM	9	Oxidation (M)	_TPFLYDLVM(Oxidation (M))_		TPFLYDLVM(1)		TPFLYDLVM(100)	0	0	1		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7783203125	2	557.778093	1113.54163	0.81437	0.00045424	-0.35438	-0.00019767	0.45999	0.00025657	557.7777506522337	84.895	0.90323	84.918	84.666	85.57	0.023132					102	40	3	0	0	0	0.0042542	4	20799	20752;20799;20843;20890		100.37	66.269	1	1431400			20915	1292;3833	13816	13960	28411;28412;28413;28414	28412		78			-0.010595547257935323
TPFLYDLVM	9	Oxidation (M)	_TPFLYDLVM(Oxidation (M))_		TPFLYDLVM(1)		TPFLYDLVM(130)	0	0	1		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7783813476562	2	557.778093	1113.54163	0.43595	0.00024317	0.34622	0.00019311	0.78217	0.00043628	557.7780496755214	86.607	2.367	86.635	86.091	88.458	0.027573					176	94	3	0	0	0	0.00087032	5	21300	21251;21300;21340;21383;21427		125.62	91.522	1	2297400			20916	1292;3833	13816	13960	28415;28416;28417;28418;28419	28416		78			-0.010595547257935323
TPFLYDLVM	9	Unmodified	_TPFLYDLVM_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.781494140625	2	549.780636	1097.54672	0.48708	0.00026779	0.64755	0.00035601	1.1346	0.0006238	549.781026549161	94.307	0.65188	94.307	94.063	94.715	0					80	29	4	0	0	0	0.23598	1	23831	23831		15.847	7.2539	1	345330			20917	1292;3833	13816	13961	28420	28420					0.001847491368152987
TPFLYDLVM	9	Unmodified	_TPFLYDLVM_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7810668945312	2	549.780636	1097.54672	0.45036	0.0002476	0.56717	0.00031182	1.0175	0.00055941	549.7809963777843	94.257	0.68623	94.295	94.079	94.765	0.038086					75	27	4	0	0	0	0.22344	1	23625	23625		15.847	2.3393	1	321890			20918	1292;3833	13816	13961	28421	28421					0.001847491368152987
TPGHTPSL	8	Unmodified	_TPGHTPSL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.2117004394531	2	405.211235	808.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.478	1	39.566	39.066	40.066	0.088562								0	0	0	0.38822	1	7009	7009		4.756	0	1				20919	1910	13817	13962	28422	28422					-0.003950327164830014
TPGPQPTL	8	Unmodified	_TPGPQPTL_					0	0	0		ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2	ENSG00000203485|ENST00000392634|INF2	ENSG00000203485|ENST00000392634|INF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.2326354980469	2	405.721436	809.428318	-0.16149	-6.5521E-05	0.12191	4.9462E-05	-0.039582	-1.6059E-05	405.7213491686786	44.984	0.45979	45.072	44.825	45.285	0.08754					25	16	2	0	0	0	0.50815	1	8686	8686		11.64	2.2929	1	23096			20920	5439	13818	13963	28423	28423					0.015981379433242182
TPGPQPTL	8	Unmodified	_TPGPQPTL_					0	0	0		ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2	ENSG00000203485|ENST00000392634|INF2	ENSG00000203485|ENST00000392634|INF2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	405.721436	809.428318	-0.003542	-1.437E-06	-0.28119	-0.00011409	-0.28473	-0.00011552	405.7213048795442	45.1	0.36242	45.1	44.909	45.271	0	0.013939	-9.1862E-05	NaN	11.64	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28176			20921	5439	13818	13963							0.015981379433242182
TPIIIAKK	8	Unmodified	_TPIIIAKK_					0	0	0			REV__tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1	REV__tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.301025390625	2	442.302396	882.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.53	1	109.53	109.03	110.03	0								0	0	0	0.38822	1	28183	28183		2.5775	0	1		+		20922	13228	13819	13964	28424	28424					0.14424726696267953
TPILRRLKM	9	Unmodified	_TPILRRLKM_					0	0	0		ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.3594970703125	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.29	1	116.29	115.79	116.79	0								0	0	0	0.2927	1	29617	29617		0.52476	0	1				20923	7258	13820	13965	28425	28425					0.14258623412865745
TPILRRLKM	9	Unmodified	_TPILRRLKM_					0	0	0		ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.3590087890625	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.22	1	117.22	116.72	117.72	0								0	0	0	0.2927	1	29760	29760		0.52476	0	1				20924	7258	13820	13965	28426	28426					0.14258623412865745
TPILRRLKM	9	Unmodified	_TPILRRLKM_					0	0	0		ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.6231689453125	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.71	1	104.74	104.24	105.24	0.034004								0	0	0	0.2927	1	26777	26777		0.52476	0	1				20925	7258	13820	13965	28427	28427					0.14258623412865745
TPILRRLKM	9	Unmodified	_TPILRRLKM_					0	0	0		ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3588256835938	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.16	1	115.17	114.67	115.67	0.013092								0	0	0	0.2927	1	29283	29283		0.52476	0	1				20926	7258	13820	13965	28428	28428					0.14258623412865745
TPILRRLKM	9	Unmodified	_TPILRRLKM_					0	0	0		ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.3579711914062	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.72	1	115.74	115.24	116.24	0.013092								0	0	0	0.2927	1	29405	29405		0.52476	0	1				20927	7258	13820	13965	28429	28429					0.14258623412865745
TPINEGQTVL	10	Unmodified	_TPINEGQTVL_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.2879028320312	2	536.287671	1070.56079	0.47795	0.00025632	0.4247	0.00022776	0.90265	0.00048408	536.2878116276136	53.681	0.63538	53.681	53.433	54.069	0					63	23	3	0	0	0	0.072378	2	11432	11432;11481		51.488	14.982	1	1212100			20928	3226	13821	13966	28430;28431	28430					0.028331178894632103
TPINEGQTVL	10	Unmodified	_TPINEGQTVL_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.2879028320312	2	536.287671	1070.56079	0.68491	0.00036731	0.18979	0.00010178	0.8747	0.00046909	536.2877251410333	53.655	0.6986	53.72	53.5	54.199	0.065426					69	29	3	0	0	0	0.021044	2	11288	11288;11333		67.081	15.451	1	1052800			20929	3226	13821	13966	28432;28433	28432					0.028331178894632103
TPIPHINAF	9	Unmodified	_TPIPHINAF_					0	0	0			REV__nc|ENSG00000113749|P25021-2|HRH2	REV__nc|ENSG00000113749|P25021-2|HRH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7528076171875	2	505.276909	1008.53927	0.4517	0.00022823	0.73863	0.00037321	1.1903	0.00060145	505.27717598198086	55.081	1.0166	55.081	54.562	55.579	0					80	39	3	0	0	0	0.16944	1	11796	11796		24.021	5.8856	1	102940	+		20930	12775	13822	13967	28434	28434					0.03533777651409764
TPIPHINAF	9	Unmodified	_TPIPHINAF_					0	0	0			REV__nc|ENSG00000113749|P25021-2|HRH2	REV__nc|ENSG00000113749|P25021-2|HRH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7525634765625	2	505.276909	1008.53927	0.48752	0.00024633	1.0717	0.00054152	1.5592	0.00078785	505.27746722592445	55.054	0.73302	55.119	54.758	55.491	0.065128					44	29	2	0	0	0	0.24635	1	11646	11646		10.824	1.4765	1	85681	+		20931	12775	13822	13967	28435	28435					0.03533777651409764
TPIRDGALTL	10	Unmodified	_TPIRDGALTL_					0	0	0		ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8060302734375	2	528.806031	1055.59751	0.16771	8.8686E-05	-0.12998	-6.8736E-05	0.037727	1.995E-05	528.8060191513443	51.225	0.51784	51.225	50.957	51.475	0					39	17	3	0	0	0	0.072378	1	10699	10699		51.488	16.556	1	296890			20932	4462	13823	13968	28436	28436					0.07193414506036788
TPIRDGALTL	10	Unmodified	_TPIRDGALTL_					0	0	0		ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8057861328125	2	528.806031	1055.59751	0.27741	0.0001467	-0.10402	-5.5008E-05	0.17339	9.1688E-05	528.8059530875029	51.171	0.57751	51.241	50.978	51.556	0.069874					47	22	3	0	0	0	0.078728	1	10534	10534		49.742	14.81	1	242050			20933	4462	13823	13968	28437	28437					0.07193414506036788
TPIVERHVL	9	Unmodified	_TPIVERHVL_					0	0	0		ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.3170776367188	2	532.316566	1062.61858	0.2032	0.00010817	0.33412	0.00017786	0.53732	0.00028602	532.3166228659104	36.102	0.64901	36.102	35.919	36.568	0					51	24	3	0	0	0	0.1646	1	6109	6109		22.658	8.752	1	92095			20934	4012	13824	13969	28438	28438					0.0897742460556401
TPIVERHVL	9	Unmodified	_TPIVERHVL_					0	0	0		ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.3168334960938	2	532.316566	1062.61858	0.32623	0.00017366	0.36238	0.0001929	0.68861	0.00036656	532.3166215723987	35.991	0.53189	36.07	35.899	36.431	0.079525					49	20	3	0	0	0	0.13554	1	5966	5966		26.021	14.526	1	105390			20935	4012	13824	13969	28439	28439					0.0897742460556401
TPKGSALRTP	10	Unmodified	_TPKGSALRTP_					0	0	0		ENSG00000125675|ENST00000620443|GRIA3	ENSG00000125675|ENST00000620443|GRIA3	ENSG00000125675|ENST00000620443|GRIA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.298583984375	2	514.298373	1026.58219	0.081908	4.2125E-05	0.35356	0.00018183	0.43547	0.00022396	514.2985316277023	90.764	0.6437	90.8	90.581	91.225	0.035446					53	24	3	0	0	0	0.43214	1	22612	22612		8.1555	1.4324	1	418130			20936	2301	13825	13970	28440	28440					0.0699654770885445
TPKKGRSIT	9	Unmodified	_TPKKGRSIT_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.30096435546875	2	494.300916	986.587279	0.59673	0.00029496	-0.14747	-7.2896E-05	0.44925	0.00022207	494.300757268769	91.814	1.0456	91.814	91.507	92.552	0					107	39	4	0	0	0	0.30397	1	23096	23096		6.2058	6.2058	1	2171200	+		20937	8395	13826	13971	28441	28441					0.09344851571461277
TPKKGRSIT	9	Unmodified	_TPKKGRSIT_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.3009338378906	2	494.300916	986.587279	0.43649	0.00021576	0.023549	1.164E-05	0.46004	0.0002274	494.3008475632414	91.784	1.359	91.821	91.532	92.891	0.03653					121	48	5	0	0	0	0.32112	1	22974	22974		3.9444	1.6417	1	1909400	+		20938	8395	13826	13971	28442	28442					0.09344851571461277
TPKLLLIQ	8	Unmodified	_TPKLLLIQ_					0	0	0			REV__ENST00000344851.4_1_6:158659294-158663164:-|nuORF	REV__ENST00000344851.4_1_6:158659294-158663164:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	463.3089294433594	2	463.307678	924.600803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.08	111.58	112.58	0								0	0	0	0.38822	1	28689	28689		4.756	0	1		+		20939	11481	13827	13972	28443	28443					0.13548709350720856
TPKMLADLL	9	Unmodified	_TPKMLADLL_					0	0	0		ENSG00000149133|ENST00000278409|OR5F1	ENSG00000149133|ENST00000278409|OR5F1	ENSG00000149133|ENST00000278409|OR5F1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2705993652344	2	501.288628	1000.5627	0.46414	0.00023267	2.6845	0.0013457	3.1487	0.0015784	501.29010486169045	83.215	0.67973	83.215	82.928	83.608	0					51	21	3	0	0	0	0.23975	1	20400	20400		14.838	6.9281	1	201680			20940	3386	13828	13973	28444	28444					0.06244455373712299
TPKNSGLL	8	Unmodified	_TPKNSGLL_					0	0	0		B2M|p.I27Nfs*30|1|0.25|ENSG00000166710|chr15:44715433-44715434|-/A|frameshift_variant	B2M|p.I27Nfs*30|1|0.25|ENSG00000166710|chr15:44715433-44715434|-/A|frameshift_variant	B2M|p.I27Nfs*30|1|0.25|ENSG00000166710|chr15:44715433-44715434|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.2507019042969	2	415.242535	828.470518	0.64885	0.00026943	3.3629	0.0013964	4.0117	0.0016658	415.2440003670828	99.721	0.5515	99.721	99.485	100.04	0					46	29	2	0	0	0	0.53858	1	25537	25537		2.3027	0	1	678670			20941	80	13829	13974	28445	28445					0.049421133517171256
TPKPKDTKI	9	Unmodified	_TPKPKDTKI_					0	0	0			REV__ENSG00000186439|ENST00000334268|TRDN	REV__ENSG00000186439|ENST00000334268|TRDN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7779541015625	2	514.310949	1026.60735	0.3618	0.00018608	-3.7397	-0.0019234	-3.3779	-0.0017373	514.3090122382805	88.809	0.14406	88.841	88.729	88.874	0.032257					8	5	2	0	0	0	0.25281	1	21956	21956		6.7232	0	1	29297	+		20942	10705	13830	13975	28446	28446					0.09510602511409161
TPKTVRKN	8	Unmodified	_TPKTVRKN_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.287841796875	2	472.287808	942.561064	-0.026579	-1.2553E-05	0.35386	0.00016712	0.32728	0.00015457	472.28784628001887	89.96	1.1157	89.96	89.646	90.762	0					104	44	4	0	0	0	0.53858	1	22581	22581		2.3027	0	1	2505500			20943	4699	13831	13976	28447	28447					0.0874858239999412
TPKVHPRGKN	10	Unmodified	_TPKVHPRGKN_					0	0	0			REV__ENSG00000141994|ENST00000309061|DUS3L	REV__ENSG00000141994|ENST00000309061|DUS3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.33056640625	2	567.330539	1132.64652	0.68324	0.00038762	0.3622	0.00020549	1.0454	0.00059311	567.3306714351886	84.433	1.6308	84.433	84.02	85.65	0					258	82	4	0	0	0	0.44496	1	21165	21165		5.7319	5.7319	1	2767200	+		20944	9419	13832	13977	28448	28448					0.0855074758567298
TPKVYIRVLWP	11	Unmodified	_TPKVYIRVLWP_					0	0	0		ENST00000439616.6_1_7:44664111-44706353:+|nuORF	ENST00000439616.6_1_7:44664111-44706353:+|nuORF	ENST00000439616.6_1_7:44664111-44706353:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.6082458496094	3	457.943091	1370.80744	0.30148	0.00013806	-0.96202	-0.00044055	-0.66054	-0.00030249	457.94252507746916	93.952	0.97795	93.99	93.448	94.426	0.038086					70	44	2	0	0	0	0.31091	1	23631	23631		1.1098	0	1	513760			20945	6519	13833	13978	28449	28449					0.13687077179042717
TPLDEKSLAL	10	Unmodified	_TPLDEKSLAL_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2	nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.8065185546875	2	543.805697	1085.59684	0.55982	0.00030443	1.1237	0.0006111	1.6836	0.00091553	543.8061413582689	55.146	0.42901	55.146	54.951	55.38	0					37	15	3	0	0	0	0.072378	1	11890	11890		51.488	25.22	1	224010			20946	5045;2223	13834	13979	28450	28450					0.05746575066314108
TPLDEKSLAL	10	Unmodified	_TPLDEKSLAL_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2	nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.8062744140625	2	543.805697	1085.59684	0.57086	0.00031044	1.0358	0.00056329	1.6067	0.00087373	543.8060379759786	55.119	0.34227	55.184	55.032	55.374	0.065128					26	13	3	0	0	0	0.072378	1	11749	11749		51.488	25.22	1	144830			20947	5045;2223	13834	13979	28451	28451					0.05746575066314108
TPLHEIAL	8	Unmodified	_TPLHEIAL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	447.2579650878906	2	447.258185	892.501818	0.16604	7.4261E-05	-0.23869	-0.00010676	-0.072658	-3.2497E-05	447.2579544258384	51.092	0.73503	51.162	50.821	51.556	0.069874					66	28	3	0	0	0	0.063449	1	10499	10499		60.39	10.721	1	713860			20948	2748	13835	13980	28452	28452					0.05126686385801804
TPLMLASFCGG	11	Unmodified	_TPLMLASFCGG_					0	0	0		NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant;NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant;ENSG00000074181|ENST00000263388|NOTCH3	NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant	NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7476196289062	2	548.76192	1095.50929	0.33896	0.00018601	0.89751	0.00049252	1.2365	0.00067853	548.7620057519439	77.981	0.49835	77.981	77.807	78.305	0					22	16	2	0	0	0	0.35693	1	18859	18859		11.495	0.67078	1	146660			20949	801	13836	13981	28453	28453					-0.03464665400429112
TPLPEEFEL	9	Unmodified	_TPLPEEFEL_					0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7714233398438	2	537.771322	1073.52809	0.33759	0.00018155	0.3574	0.0001922	0.69499	0.00037374	537.771447403084	77.997	0.58865	77.997	77.772	78.361	0					49	19	3	0	0	0	0.037705	2	18841	18841;18890		46.021	13.715	1	693720			20950	1969	13837	13982	28454;28455	28454					-0.005730892333758675
TPLPEEFEL	9	Unmodified	_TPLPEEFEL_					0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.771484375	2	537.771322	1073.52809	0.65801	0.00035386	-0.032298	-1.7369E-05	0.62571	0.00033649	537.7712278389178	77.924	0.63821	77.959	77.74	78.379	0.034485					51	21	3	0	0	0	0.037705	2	18676	18676;18727		46.021	19.137	1	872250			20951	1969	13837	13982	28456;28457	28456					-0.005730892333758675
TPLVDPGAPS	10	Unmodified	_TPLVDPGAPS_					0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.2502136230469	2	477.250557	952.486562	-0.20958	-0.00010002	-0.12013	-5.7332E-05	-0.32971	-0.00015735	477.2504531835066	34.711	0.40717	34.711	34.568	34.975	0					24	15	2	0	0	0	0.46746	1	5721	5721		1.4819	0	1	28870	+		20952	9253	13838	13983	28458	28458					0.008417747979478918
TPLVFITVL	9	Unmodified	_TPLVFITVL_					0	0	0			REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.81549072265625	2	501.815336	1001.61612	0.2426	0.00012174	-0.22585	-0.00011333	0.016747	8.4037E-06	501.8151988687328	102.68	0.28162	102.68	102.5	102.79	0					28	19	2	0	0	0	0.22344	2	26315	26315;26358		15.847	0	1	249910	+		20953	12998	13839	13984	28459;28460	28459					0.11537576147884465
TPLVFITVL	9	Unmodified	_TPLVFITVL_					0	0	0			REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8153991699219	2	501.815336	1001.61612	0.4248	0.00021317	-0.12831	-6.4388E-05	0.29649	0.00014878	501.8152367389096	101.98	0.25049	102.02	101.96	102.22	0.042656					28	20	2	0	0	0	0.22344	1	25976	25976		15.847	0	1	628260	+		20954	12998	13839	13984	28461	28461					0.11537576147884465
TPLVFITVL	9	Unmodified	_TPLVFITVL_					0	0	0			REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8153381347656	2	501.815336	1001.61612	0.40896	0.00020522	-0.13015	-6.5313E-05	0.27881	0.00013991	501.8152137762468	102.53	0.33902	102.57	102.31	102.64	0.040916					61	22	3	0	0	0	0.17247	2	26091	26091;26130		21.747	0	1	438760	+		20955	12998	13839	13984	28462;28463	28462					0.11537576147884465
TPLVFITVL	9	Unmodified	_TPLVFITVL_					0	0	0			REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.81549072265625	2	501.815336	1001.61612	0.39936	0.00020041	-0.2606	-0.00013077	0.13877	6.9635E-05	501.8151642999078	102.66	0.52639	102.7	102.64	103.17	0.040916					75	44	3	0	0	0	0.26684	1	26183	26183		10.824	0	1	313210	+		20956	12998	13839	13984	28464	28464					0.11537576147884465
TPLVFITVL	9	Unmodified	_TPLVFITVL_					0	0	0			REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	501.815336	1001.61612	0.2426	0.00012174	-0.22585	-0.00011333	0.016747	8.4037E-06	501.8151988687328	102.68	0.28162	102.68	102.5	102.79	0	0.056383	-5.5941E-05	NaN	21.747	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249910	+		20957	12998	13839	13984							0.11537576147884465
TPLVFITVL	9	Unmodified	_TPLVFITVL_					0	0	0			REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	501.815336	1001.61612	0.40896	0.00020522	-0.13015	-6.5313E-05	0.27881	0.00013991	501.8152137762468	102.53	0.33902	102.57	102.31	102.64	0.040916	-0.056383	4.0102E-05	NaN	21.747	61	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438760	+		20958	12998	13839	13984							0.11537576147884465
TPLVFTLVI	9	Unmodified	_TPLVFTLVI_					0	0	0			REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF	REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.8153991699219	2	501.815336	1001.61612	0.32083	0.000161	0.0039401	1.9772E-06	0.32477	0.00016298	501.8153108280365	101.5	0.96711	101.5	100.97	101.94	0					181	63	4	0	0	0	0.12809	2	26120	25887;26120		26.884	0	1	3400600	+		20959	9240	13840	13985	28465;28466	28466					0.11537576147907203
TPLVFTLVI	9	Unmodified	_TPLVFTLVI_					0	0	0			REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF	REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.8155517578125	2	501.815336	1001.61612	0.27777	0.00013939	0.088832	4.4577E-05	0.3666	0.00018397	501.8153584129185	102.01	0.56666	102.01	101.94	102.5	0					83	39	3	0	0	0	0.092418	2	26159	26159;26210		34.102	0	1	3225600	+		20960	9240	13840	13985	28467;28468	28467					0.11537576147907203
TPLVFTLVI	9	Unmodified	_TPLVFTLVI_					0	0	0			REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF	REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.81549072265625	2	501.815336	1001.61612	0.22223	0.00011152	0.0051792	2.599E-06	0.22741	0.00011412	501.81523248797623	102.84	0.25223	102.84	102.77	103.03	0					41	15	3	0	0	0	0.26684	1	26459	26459		10.824	0	1	337640	+		20961	9240	13840	13985	28469	28469					0.11537576147907203
TPLYELEALMS	11	Unmodified	_TPLYELEALMS_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9-3|MGA	REV__nc|ENSG00000174197|Q8IWI9-3|MGA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8152465820312	2	633.817947	1265.62134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.1	1	86.125	85.625	86.625	0.025169								0	0	0	0.33873	1	21162	21162		1.1933	0.12188	1		+		20962	10340	13841	13986	28470	28470					-0.0008453284247025294
TPMPALSVWMD	11	Unmodified	_TPMPALSVWMD_					0	0	0			REV__ENSG00000162873|ENST00000367155|KLHDC8A	REV__ENSG00000162873|ENST00000367155|KLHDC8A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.5546875	3	416.531482	1246.57262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.673	1	51.743	51.243	52.243	0.069874								0	0	0	0.33867	1	10687	10687		1.2148	0	1		+		20963	9912	13842	13987	28471	28471					-0.04080724683194603
TPNEERNVM	9	Unmodified	_TPNEERNVM_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.254150390625	2	545.253305	1088.49206	-0.13866	-7.5604E-05	0.3487	0.00019013	0.21004	0.00011453	545.2535429320897	27.544	0.49158	27.544	27.327	27.818	0					62	39	2	0	0	0	0.2779	2	3593	3555;3593		9.544	6.2627	1	155970			20964	4977	13843	13988	28472;28473	28473					-0.04864869681887285
TPNEERNVM	9	Unmodified	_TPNEERNVM_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.25341796875	2	545.253305	1088.49206	-0.10538	-5.7458E-05	0.32898	0.00017938	0.2236	0.00012192	545.2535383284956	27.39	0.43261	27.477	27.323	27.756	0.0867					56	33	2	0	0	0	0.29718	2	3401	3401;3440		7.1017	3.1573	1	159510			20965	4977	13843	13988	28474;28475	28474					-0.04864869681887285
TPNHVEHTL	9	Unmodified	_TPNHVEHTL_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7455444335938	2	524.26453	1046.51451	-0.27667	-0.00014505	-0.6148	-0.00032232	-0.89148	-0.00046737	524.2644819740442	22.771	0.61156	22.771	22.612	23.223	0					118	57	3	0	0	0	0.20294	1	2236	2236		24.991	11.948	1	121780			20966	880	13844	13989	28476	28476					-0.006889022219411345
TPNHVEHTL	9	Unmodified	_TPNHVEHTL_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2643432617188	2	524.26453	1046.51451	-0.06951	-3.6442E-05	-0.53624	-0.00028113	-0.60575	-0.00031758	524.264449709228	22.598	0.44571	22.7	22.527	22.973	0.10178					105	43	3	0	0	0	0.081383	1	2072	2072		36.506	18.36	1	141090			20967	880	13844	13989	28477	28477					-0.006889022219411345
TPPAHSSVF	9	Unmodified	_TPPAHSSVF_					0	0	0		nc|ENSG00000179840|Q5SR53|PIK3CD-AS1;ENST00000377320.3_1_1:9713839-9714497:-|nuORF	nc|ENSG00000179840|Q5SR53|PIK3CD-AS1	nc|ENSG00000179840|Q5SR53|PIK3CD-AS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.73773193359375	2	471.737617	941.460681	0.085319	4.0248E-05	0.11727	5.532E-05	0.20259	9.5568E-05	471.7375691960772	46.875	0.97956	46.875	46.66	47.64	0					86	37	4	0	0	0	0.29105	2	9338	9338;9478		7.9102	0	1	363080			20968	6257	13845	13990	28478;28479	28478					-0.012390746536652841
TPPAHSSVF	9	Unmodified	_TPPAHSSVF_					0	0	0		nc|ENSG00000179840|Q5SR53|PIK3CD-AS1;ENST00000377320.3_1_1:9713839-9714497:-|nuORF	nc|ENSG00000179840|Q5SR53|PIK3CD-AS1	nc|ENSG00000179840|Q5SR53|PIK3CD-AS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7381896972656	2	471.737617	941.460681	-0.020163	-9.5114E-06	0.27096	0.00012782	0.2508	0.00011831	471.73755534153037	46.774	0.78156	46.857	46.65	47.431	0.083096					67	33	3	0	0	0	0.29105	1	9168	9168		7.9102	0	1	295400			20969	6257	13845	13990	28480	28480					-0.012390746536652841
TPPPDDPRL	9	Unmodified	_TPPPDDPRL_					0	0	0		nc|ENSG00000110025|Q9NRS6-2|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;ENSG00000110025|ENST00000377244|SNX15	nc|ENSG00000110025|Q9NRS6-2|SNX15	nc|ENSG00000110025|Q9NRS6-2|SNX15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2616271972656	2	504.261456	1006.50836	0.056049	2.8263E-05	0.29283	0.00014767	0.34888	0.00017593	504.2615496116039	35.641	1.2557	35.641	35.205	36.46	0					133	47	3	0	0	0	0.20358	3	5997	5945;5997;6120		18.146	10.236	1	179270			20970	1648	13846	13991	28481;28482;28483	28482					0.005365795465081646
TPPPDDPRL	9	Unmodified	_TPPPDDPRL_					0	0	0		nc|ENSG00000110025|Q9NRS6-2|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;ENSG00000110025|ENST00000377244|SNX15	nc|ENSG00000110025|Q9NRS6-2|SNX15	nc|ENSG00000110025|Q9NRS6-2|SNX15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2614440917969	2	504.261456	1006.50836	0.10942	5.5178E-05	0.11027	5.5605E-05	0.21969	0.00011078	504.261434906407	35.524	1.2047	35.603	35.226	36.431	0.078827					123	46	3	0	0	0	0.20358	1	5811	5811		18.146	11.941	1	158420			20971	1648	13846	13991	28484	28484					0.005365795465081646
TPPRKQRLTL	10	Unmodified	_TPPRKQRLTL_					0	0	0		ENST00000370114.7_1_1:101360984-101361197:-|nuORF	ENST00000370114.7_1_1:101360984-101361197:-|nuORF	ENST00000370114.7_1_1:101360984-101361197:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.9188537597656	3	403.919056	1208.73534	-0.25323	-0.00010229	-0.45614	-0.00018424	-0.70937	-0.00028653	403.91893462180076	42.326	0.29543	42.326	42.193	42.489	0					17	9	3	0	0	0	0.44859	1	7998	7998		5.0475	0.64137	1	35039			20972	6202	13847	13992	28485	28485					0.13932162825312844
TPPYADPSL	9	Unmodified	_TPPYADPSL_					0	0	0		nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENSG00000173039|ENST00000406246|RELA	nc|ENSG00000173039|Q04206-2|RELA	nc|ENSG00000173039|Q04206-2|RELA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7370910644531	2	480.737283	959.460012	0.31351	0.00015072	-0.05944	-2.8575E-05	0.25407	0.00012214	480.73718675471264	54.833	0.44567	54.833	54.614	55.059	0					22	16	2	0	0	0	0.18364	1	11814	11814		20.454	8.8133	1	111610			20973	4523	13848	13993	28486	28486					-0.021339140933832823
TPPYADPSL	9	Unmodified	_TPPYADPSL_					0	0	0		nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENSG00000173039|ENST00000406246|RELA	nc|ENSG00000173039|Q04206-2|RELA	nc|ENSG00000173039|Q04206-2|RELA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7370300292969	2	480.737283	959.460012	0.35285	0.00016963	-0.3679	-0.00017687	-0.015052	-7.2358E-06	480.73687930043576	54.8	0.31123	54.865	54.672	54.983	0.065128					22	13	2	0	0	0	0.19398	1	11635	11635		19.257	7.6167	1	81420			20974	4523	13848	13993	28487	28487					-0.021339140933832823
TPQDHEVAL	9	Unmodified	_TPQDHEVAL_					0	0	0		ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000170832|ENST00000300896|USP32;ENST00000444558.5_1_17:16701792-16703686:+|nuORF;ENST00000448331.7_2_17:16701792-16704365:+|nuORF	ENSG00000129204|ENST00000574788|USP6	ENSG00000129204|ENST00000574788|USP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.251953125	2	505.251089	1008.48762	0.044328	2.2397E-05	0.91932	0.00046449	0.96364	0.00048688	505.251625808558	35.774	0.56515	35.774	35.589	36.155	0					63	21	5	0	0	0	0.023873	2	6005	6005;6047		55.503	21.101	1	356690			20975	2423	13849	13994	28488;28489	28488					-0.016280108331443444
TPQDHEVAL	9	Unmodified	_TPQDHEVAL_					0	0	0		ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000170832|ENST00000300896|USP32;ENST00000444558.5_1_17:16701792-16703686:+|nuORF;ENST00000448331.7_2_17:16701792-16704365:+|nuORF	ENSG00000129204|ENST00000574788|USP6	ENSG00000129204|ENST00000574788|USP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.2519836425781	2	505.251089	1008.48762	0.1016	5.1333E-05	0.69183	0.00034955	0.79343	0.00040088	505.2515061753538	35.694	0.54	35.773	35.569	36.109	0.078827					53	19	4	0	0	0	0.028398	1	5862	5862		52.268	18.166	1	358080			20976	2423	13849	13994	28490	28490					-0.016280108331443444
TPQEQVDSL	9	Unmodified	_TPQEQVDSL_					0	0	0		nc|ENSG00000131165|Q9HD42-2|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	nc|ENSG00000131165|Q9HD42-2|CHMP1A	nc|ENSG00000131165|Q9HD42-2|CHMP1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7482604980469	2	508.748379	1015.4822	-0.24144	-0.00012283	-0.092062	-4.6836E-05	-0.3335	-0.00016967	508.7482258831523	44.977	0.66841	44.977	44.632	45.301	0					53	23	3	0	0	0	0.03918	2	8831	8787;8831		45.7	19.219	1	231730			20977	2515	13850	13995	28491;28492	28492					-0.024917344156278887
TPQEQVDSL	9	Unmodified	_TPQEQVDSL_					0	0	0		nc|ENSG00000131165|Q9HD42-2|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	nc|ENSG00000131165|Q9HD42-2|CHMP1A	nc|ENSG00000131165|Q9HD42-2|CHMP1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.74822998046875	2	508.748379	1015.4822	0.0057061	2.903E-06	-0.36806	-0.00018725	-0.36236	-0.00018435	508.7481465545243	44.938	0.62019	45.026	44.681	45.301	0.08754					50	23	3	0	0	0	0.056368	1	8641	8641		41.956	16.965	1	185650			20978	2515	13850	13995	28493	28493					-0.024917344156278887
TPQFPDMIL	9	Oxidation (M)	_TPQFPDM(Oxidation (M))IL_		TPQFPDM(1)IL		TPQFPDM(110)IL	0	0	1		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.268310546875	2	539.267893	1076.52123	0.36103	0.00019469	0.12583	6.7857E-05	0.48687	0.00026255	539.2681069654996	74.108	1.2912	74.108	73.798	75.09	0					195	47	5	0	0	0	0.0022565	7	17694	17603;17648;17694;17745;17792;17835;17883		114.2	90.412	1	13306000			20979	5487	13851	13996	28494;28495;28496;28497;28498;28499;28500	28496		310			-0.013967253856208117
TPQFPDMIL	9	Oxidation (M)	_TPQFPDM(Oxidation (M))IL_		TPQFPDM(1)IL		TPQFPDM(100)IL	0	0	1		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.26806640625	2	539.267893	1076.52123	0.41081	0.00022154	0.10939	5.8993E-05	0.52021	0.00028053	539.267932016145	76.107	6.1144	76.107	75.058	81.173	0					570	244	5	0	0	0	0.0042703	14	18278	18063;18111;18156;18196;18236;18278;18323;18375;18425;18469;18512;18557;18608;18649		99.755	79.302	1	31144000			20980	5487	13851	13996	28501;28502;28503;28504;28505;28506;28507;28508;28509;28510;28511;28512;28513;28514	28506		310			-0.013967253856208117
TPQFPDMIL	9	Oxidation (M)	_TPQFPDM(Oxidation (M))IL_		TPQFPDM(1)IL		TPQFPDM(110)IL	0	0	1		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.268310546875	2	539.267893	1076.52123	0.58368	0.00031476	-0.13447	-7.2513E-05	0.44922	0.00024225	539.2679491217547	74.387	1.3417	74.436	73.778	75.119	0.048546					187	48	5	0	0	0	0.0028323	6	17522	17476;17522;17567;17610;17652;17705		110.67	86.885	1	12356000			20981	5487	13851	13996	28515;28516;28517;28518;28519;28520	28516		310			-0.013967253856208117
TPQFPDMIL	9	Oxidation (M)	_TPQFPDM(Oxidation (M))IL_		TPQFPDM(1)IL		TPQFPDM(110)IL	0	0	1		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2681274414062	2	539.267893	1076.52123	0.5274	0.00028441	-0.014111	-7.6096E-06	0.51328	0.0002768	539.2678840240484	75.998	6.6708	76.038	75.11	81.781	0.03923					554	264	5	0	0	0	0.0022565	13	18221	17933;17977;18016;18051;18090;18132;18177;18221;18273;18322;18366;18412;18456		114.2	90.412	1	30683000			20982	5487	13851	13996	28521;28522;28523;28524;28525;28526;28527;28528;28529;28530;28531;28532;28533	28528		310			-0.013967253856208117
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2706298828125	2	531.270435	1060.52632	0.75656	0.00040194	-0.61933	-0.00032903	0.13723	7.2906E-05	531.2702389796469	84.297	1.1477	84.297	83.809	84.957	0					127	61	3	0	0	0	0.026209	5	20778	20743;20778;20815;20859;20907		53.833	34.394	1	4609900			20983	5487	13851	13997	28534;28535;28536;28537;28538	28535					-0.0015242152298924339
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2705688476562	2	531.270435	1060.52632	0.52035	0.00027645	-0.33682	-0.00017894	0.18353	9.7504E-05	531.270364518491	84.292	1.1523	84.314	83.723	84.876	0.021744					120	64	3	0	0	0	0.020768	3	20615	20569;20615;20654		57.722	38.283	1	3754600			20984	5487	13851	13997	28539;28540;28541	28540					-0.0015242152298924339
TPQIEREYDL	10	Unmodified	_TPQIEREYDL_					0	0	0			REV__ENSG00000164056|ENST00000651917|SPRY1	REV__ENSG00000164056|ENST00000651917|SPRY1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8728942871094	3	421.878704	1262.61428	0.38968	0.0001644	3.1106	0.0013123	3.5002	0.0014767	421.87976250488197	48.485	0.29464	48.485	48.311	48.605	0					16	9	2	0	0	0	0.44727	1	9853	9853		2.8433	0	1	50538	+		20985	9976	13852	13998	28542	28542					-0.006521293986452292
TPQPKSSNTA	10	Unmodified	_TPQPKSSNTA_					0	0	0			REV__ENSG00000028528|ENST00000559844|SNX1	REV__ENSG00000028528|ENST00000559844|SNX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7616577148438	2	515.76182	1029.50909	-0.089969	-4.6403E-05	0.16335	8.425E-05	0.073382	3.7847E-05	515.7617434341034	27.524	0.57986	27.524	27.297	27.876	0					81	45	2	0	0	0	0.12844	1	3567	3567		41.956	5.8285	1	319740	+		20986	8007	13853	13999	28543	28543					-0.004486258044153146
TPQPKSSNTA	10	Unmodified	_TPQPKSSNTA_					0	0	0			REV__ENSG00000028528|ENST00000559844|SNX1	REV__ENSG00000028528|ENST00000559844|SNX1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	515.76182	1029.50909	-0.075921	-3.9157E-05	0.079744	4.1129E-05	0.003823	1.9717E-06	515.761765631052	27.395	0.45724	27.482	27.277	27.734	0.0867	-0.021081	-5.2559E-05	NaN	41.956	81	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332900	+		20987	8007	13853	13999							-0.004486258044153146
TPQQDQAPG	9	Unmodified	_TPQQDQAPG_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2189636230469	2	471.219788	940.425024	-0.28974	-0.00013653	-0.25533	-0.00012032	-0.54507	-0.00025685	471.21956202295604	24.392	0.45606	24.492	24.312	24.768	0.099739					90	39	3	0	0	0	0.32375	1	2515	2515		3.5965	0	1	75817			20988	5056	13854	14000	28544	28544					-0.04757156901337112
TPQRCLPCL	9	Unmodified	_TPQRCLPCL_					0	0	0			REV__ENSG00000165188|ENST00000489339|RNF183	REV__ENSG00000165188|ENST00000489339|RNF183	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7616577148438	2	515.762255	1029.50996	-0.075921	-3.9157E-05	-0.76211	-0.00039307	-0.83804	-0.00043223	515.761765631052	27.395	0.45724	27.482	27.277	27.734	0.0867					81	36	3	0	0	0	0.30005	1	3371	3371		6.7232	1.8262	1	332900	+		20989	10027	13855	14001	28545	28545					-0.0036182596074922913
TPQSASGLHP	10	Unmodified	_TPQSASGLHP_					0	0	0			REV__NLRP1|p.P108A|1|0.2|ENSG00000091592|chr17:5582796-5582796|G/C|missense_variant	REV__NLRP1|p.P108A|1|0.2|ENSG00000091592|chr17:5582796-5582796|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.752197265625	2	497.751256	993.487959	0.21647	0.00010775	-0.12763	-6.353E-05	0.088838	4.4219E-05	497.7512619411981	18.982	0.40229	19.072	18.9	19.302	0.089703					65	45	2	0	0	0	0.46656	1	1202	1202		1.6526	0.17072	1	24948	+		20990	12933	13856	14002	28546	28546					-0.00904591113294373
TPQSASGLHP	10	Unmodified	_TPQSASGLHP_					0	0	0			REV__NLRP1|p.P108A|1|0.2|ENSG00000091592|chr17:5582796-5582796|G/C|missense_variant	REV__NLRP1|p.P108A|1|0.2|ENSG00000091592|chr17:5582796-5582796|G/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	497.751256	993.487959	0.21647	0.00010775	-0.12763	-6.353E-05	0.088838	4.4219E-05	497.7512619411981	18.982	0.40229	19.072	18.9	19.302	0.089703	0.010959	-0.00013889	NaN	1.6526	65	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24948	+		20991	12933	13856	14002							-0.00904591113294373
TPRDVDAPL	9	Unmodified	_TPRDVDAPL_					0	0	0			REV__ENST00000556440.6_2_17:62502882-62503020:+|nuORF	REV__ENST00000556440.6_2_17:62502882-62503020:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2610778808594	2	492.261456	982.50836	0.052822	2.6002E-05	-0.33226	-0.00016356	-0.27944	-0.00013756	492.26128274403055	44.929	0.4958	45.016	44.825	45.321	0.08754					39	18	3	0	0	0	0.30397	1	8703	8703		6.2058	0	1	124820	+		20992	12461	13857	14003	28547	28547					0.016405795465175288
TPRRLKRRRRQ	11	Unmodified	_TPRRLKRRRRQ_					0	0	0		ENST00000321448.12_1_11:74648098-74660104:-|nuORF;ENST00000530562.5_1_11:74648079-74660104:-|nuORF	ENST00000321448.12_1_11:74648098-74660104:-|nuORF	ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.8153076171875	3	508.325702	1521.95528	0.24227	0.00012315	-0.1182	-6.0083E-05	0.12408	6.3072E-05	508.659867053889	107.43	0.059402	107.45	107.44	107.5	0.025711					6	5	2	0	0	0	0.31102	1	27528	27528		0	0	1	54823			20993	6033	13858	14004	28548	28548					0.21517826276226515
TPSVHEPVL	9	Unmodified	_TPSVHEPVL_					0	0	0		ENST00000570209.1_1_15:31108772-31126588:+|nuORF;ENSG00000128731|ENST00000261609|HERC2	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7662353515625	2	489.766374	977.518196	-0.21177	-0.00010372	-0.13013	-6.3735E-05	-0.3419	-0.00016745	489.76626933960534	44.172	0.89496	44.172	43.913	44.808	0					84	30	5	0	0	0	0.0032694	2	8580	8533;8580		108	61.976	1	1103700			20994	2409	13859	14005	28549;28550	28550					0.028537675519032746
TPSVHEPVL	9	Unmodified	_TPSVHEPVL_					0	0	0		ENST00000570209.1_1_15:31108772-31126588:+|nuORF;ENSG00000128731|ENST00000261609|HERC2	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7663879394531	2	489.766374	977.518196	-0.07105	-3.4798E-05	0.053163	2.6037E-05	-0.017887	-8.7605E-06	489.76632593513756	44.064	0.73225	44.153	43.95	44.682	0.088924					69	24	5	0	0	0	0.0025191	2	8376	8376;8425		112.59	66.572	1	914680			20995	2409	13859	14005	28551;28552	28551					0.028537675519032746
TPTEVKDYL	9	Unmodified	_TPTEVKDYL_					0	0	0		ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2771606445312	2	533.276772	1064.53899	0.34256	0.00018268	-0.63432	-0.00033827	-0.29177	-0.00015559	533.2764792229192	48.051	0.71966	48.051	47.763	48.483	0					79	24	4	0	0	0	0.00021732	3	9719	9676;9719;9772		136.39	36.593	1	1952300			20996	1527	13860	14006	28553;28554;28555	28554					0.009303131409069465
TPTEVKDYL	9	Unmodified	_TPTEVKDYL_					0	0	0		ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2769165039062	2	533.276772	1064.53899	0.66112	0.00035256	-1.0512	-0.00056061	-0.39012	-0.00020804	533.2762557419991	47.977	0.68666	48.057	47.785	48.472	0.080029					78	24	4	0	0	0	0.0034159	3	9560	9534;9560;9606		107.1	35.177	1	1513500			20997	1527	13860	14006	28556;28557;28558	28557					0.009303131409069465
TPTLYHGYY	9	Unmodified	_TPTLYHGYY_					0	0	0		ENSG00000170276|ENST00000304298|HSPB2	ENSG00000170276|ENST00000304298|HSPB2	ENSG00000170276|ENST00000304298|HSPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7635498046875	2	557.763832	1113.51311	0.012895	7.1926E-06	-0.96404	-0.0005377	-0.95114	-0.00053051	557.7635183903247	31.78	0.36596	31.78	31.571	31.937	0					26	14	3	0	0	0	0.34646	1	4854	4854		0.6015	0	1	38696			20998	4383	13861	14007	28559	28559					-0.03910536310718271
TPTPSQQLQ	9	Unmodified	_TPTPSQQLQ_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2774963378906	2	500.258914	998.503274	0.33574	0.00016796	0.20795	0.00010403	0.54369	0.00027199	500.2598745190828	71.433	0.71558	71.492	71.237	71.953	0.058578					81	25	6	0	0	0	0.24021	1	16721	16721		13.906	0	1	423270	+		20999	9366	13862	14008	28560	28560					0.003962756839086978
TPTSVLDYF	9	Unmodified	_TPTSVLDYF_					0	0	0		ENST00000504849.5_1_4:39324953-39367861:-|nuORF;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENST00000504849.5_1_4:39324953-39367861:-|nuORF	ENST00000504849.5_1_4:39324953-39367861:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7581787109375	2	521.758215	1041.50188	0.69836	0.00036438	-0.35715	-0.00018635	0.34121	0.00017803	521.7579490645338	81.936	0.76574	81.936	81.716	82.482	0					55	26	4	0	0	0	0.0064512	2	20048	20048;20100		78.149	29.804	1	753040			21000	517	13863	14009	28561;28562	28561					-0.017213584048704433
TPTSVLDYF	9	Unmodified	_TPTSVLDYF_					0	0	0		ENST00000504849.5_1_4:39324953-39367861:-|nuORF;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENST00000504849.5_1_4:39324953-39367861:-|nuORF	ENST00000504849.5_1_4:39324953-39367861:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7581787109375	2	521.758215	1041.50188	0.30127	0.00015719	0.067993	3.5476E-05	0.36927	0.00019267	521.7581288612772	81.956	0.85576	81.978	81.708	82.563	0.021866					58	30	3	0	0	0	0.004452	2	19881	19881;19930		92.822	44.476	1	734530			21001	517	13863	14009	28563;28564	28563					-0.017213584048704433
TPVDDRISL	9	Unmodified	_TPVDDRISL_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.274658203125	2	508.274564	1014.53457	0.14079	7.1559E-05	0.11487	5.8385E-05	0.25566	0.00012994	508.27458739449423	49.343	0.73339	49.343	49.088	49.822	0					66	25	4	0	0	0	0.0045688	2	10134	10086;10134		88.364	39.96	1	1034300			21002	670	13864	14010	28565;28566	28566					0.027888487180121047
TPVDDRISL	9	Unmodified	_TPVDDRISL_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.274658203125	2	508.274564	1014.53457	0.098176	4.99E-05	0.15106	7.6778E-05	0.24923	0.00012668	508.2746105102488	49.266	0.55213	49.343	49.106	49.658	0.076603					55	19	4	0	0	0	0.0052326	3	9982	9938;9982;10043		81.915	34.167	1	858340			21003	670	13864	14010	28567;28568;28569	28568					0.027888487180121047
TPVDFFFEF	9	Unmodified	_TPVDFFFEF_					0	0	0		ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7686767578125	2	574.768583	1147.52261	0.14221	8.1739E-05	0.24348	0.00013994	0.38569	0.00022168	574.768675912339	104.1	0.64281	104.1	103.88	104.53	0					166	62	4	0	0	0	0.0046499	4	26772	26737;26772;26811;26855		85.272	33.267	1	554350			21004	826	13865	14011	28570;28571;28572;28573	28571					-0.04524768025180492
TPVDFFFEF	9	Unmodified	_TPVDFFFEF_					0	0	0		ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	ENST00000568912.1_1_15:34787807-34788098:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7686767578125	2	574.768583	1147.52261	0.36198	0.00020805	-0.041018	-2.3576E-05	0.32096	0.00018448	574.7685070472672	104.04	0.61578	104.08	103.87	104.48	0.03791					133	59	3	0	0	0	0.0097093	5	26622	26554;26591;26622;26659;26663		68.081	30.107	1	474180			21005	826	13865	14011	28574;28575;28576;28577;28578	28576					-0.04524768025180492
TPVDLEVKL	9	Unmodified	_TPVDLEVKL_					0	0	0		ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP	ENSG00000114650|ENST00000265565|SCAP	ENSG00000114650|ENST00000265565|SCAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2967834472656	2	507.297507	1012.58046	0.43303	0.00021967	-0.74452	-0.00037769	-0.31149	-0.00015802	507.2971041961985	60.214	0.46746	60.214	59.989	60.456	0					35	16	3	0	0	0	0.026931	2	13403	13403;13452		53.317	20.531	1	198440			21006	1850	13866	14012	28579;28580	28579					0.07467493900230693
TPVFIFERL	9	Unmodified	_TPVFIFERL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3212280273438	2	561.321317	1120.62808	0.18004	0.00010106	-2.2335	-0.0012537	-2.0535	-0.0011527	561.3198355830017	73.654	1.0304	73.654	73.446	74.477	0					98	37	4	0	0	0	4.9699E-07	1	17521	17521		125.04	42.508	1	1536600			21007	2364	13867	14013	28581	28581					0.07259192891069688
TPVFIFERL	9	Unmodified	_TPVFIFERL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3214111328125	2	561.321317	1120.62808	0.42458	0.00023833	-1.3031	-0.00073148	-0.87856	-0.00049316	561.3199367059299	73.607	0.98685	73.66	73.441	74.428	0.052574					84	36	4	0	0	0	0.0088523	1	17349	17349		78.06	37.821	1	1445900			21008	2364	13867	14013	28582	28582					0.07259192891069688
TPVGKDPGL	9	Unmodified	_TPVGKDPGL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.2479553222656	2	442.247818	882.481082	0.045931	2.0313E-05	0.55213	0.00024418	0.59807	0.00026449	442.24794752845725	32.919	0.69208	32.919	32.658	33.35	0					74	28	4	0	0	0	0.081383	2	5188	5144;5188		36.506	16.053	1	302760			21009	1671	13868	14014	28583;28584	28584					0.0351409600613124
TPVGKDPGL	9	Unmodified	_TPVGKDPGL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.24798583984375	2	442.247818	882.481082	-0.16272	-7.1963E-05	0.80881	0.0003577	0.64609	0.00028573	442.24805680575247	32.874	0.74489	32.948	32.734	33.479	0.074322					78	31	4	0	0	0	0.056368	1	5048	5048		41.956	16.556	1	262050			21010	1671	13868	14014	28585	28585					0.0351409600613124
TPVGSSYGDLL	11	Unmodified	_TPVGSSYGDLL_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7796020507812	2	554.779679	1107.5448	0.89188	0.0004948	-0.99409	-0.0005515	-0.10221	-5.6706E-05	554.779134405787	66.647	0.6265	66.712	66.474	67.101	0.065063					51	23	3	0	0	0	0.015004	2	15227	15227;15277		70.332	45.341	1	407880			21011	3427	13869	14015	28586;28587	28586					-0.00466588347421748
TPVRDTNGSNS	11	Unmodified	_TPVRDTNGSNS_					0	0	0			REV__ENST00000569680.1_1_15:74833658-74865607:+|nuORF	REV__ENST00000569680.1_1_15:74833658-74865607:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2722778320312	2	574.270541	1146.52653	0.27177	0.00015607	2.4899	0.0014299	2.7616	0.0015859	574.2721298266717	48.075	0.781	48.075	47.763	48.544	0					48	26	3	0	0	0	0.31053	1	9754	9754		6.1918	0.89496	1	103820	+		21012	12517	13870	14016	28588	28588					-0.04087330269408085
TPVRDTNGSNS	11	Unmodified	_TPVRDTNGSNS_					0	0	0			REV__ENST00000569680.1_1_15:74833658-74865607:+|nuORF	REV__ENST00000569680.1_1_15:74833658-74865607:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.270541	1146.52653	0.48006	0.00027569	2.2836	0.0013114	2.7636	0.0015871	574.2721829154068	47.922	0.46284	48.002	47.785	48.248	0.080029	-0.03655	-0.00017057	NaN	6.1918	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75644	+		21013	12517	13870	14016							-0.04087330269408085
TPVSIEPRI	9	Unmodified	_TPVSIEPRI_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.739990234375	2	506.295299	1010.57605	0.11527	5.8361E-05	-1.3363	-0.00067658	-1.2211	-0.00061822	506.2948049874114	50.002	0.38448	50.002	49.822	50.206	0					20	13	2	0	0	0	0.2553	1	10359	10359		5.2969	0.96765	1	73219			21014	3609	13871	14017	28589	28589					0.0711802947733986
TPYEYPYTL	9	Unmodified	_TPYEYPYTL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.80126953125	2	573.771322	1145.52809	0.51175	0.00029363	0.21876	0.00012552	0.73051	0.00041915	573.7711528506408	67.975	0.6056	68.038	67.904	68.51	0.063507					36	22	3	0	0	0	0.21603	1	15637	15637		20.454	4.6064	1	209840			21015	1763	13872	14018	28590	28590					-0.038850892333812226
TQAQAAPF	8	Unmodified	_TQAQAAPF_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R-PPAP2A|1|fusion	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.2195129394531	2	417.211235	832.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.64	1	62.713	62.213	63.213	0.072701								0	0	0	0.38822	1	14023	14023		2.5775	0	1				21016	5271	13873	14019	28591	28591					-0.014990327164809969
TQARRRRRKFP	11	Unmodified	_TQARRRRRKFP_					0	0	0		ENST00000475854.1_1_X:100914419-100914797:-|nuORF;ENST00000328766.9_1_X:100913503-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.29925537109375	3	491.299153	1470.87563	-0.050111	-2.462E-05	0.51398	0.00025252	0.46386	0.0002279	491.2992791663712	107.5	0.32225	107.5	107.29	107.62	0					114	32	4	0	0	0	0.41731	1	27777	27777		0.36667	0.27183	1	922240			21017	6049	13874	14020	28592	28592					0.15902759602249716
TQATRGPQV	9	Unmodified	_TQATRGPQV_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.259033203125	2	479.259248	956.503943	-0.2432	-0.00011655	-0.1676	-8.0326E-05	-0.4108	-0.00019688	479.2590801565133	22.749	0.56137	22.851	22.61	23.171	0.10178					119	53	3	0	0	0	0.30757	1	2146	2146		5.7319	0.83484	1	116500			21018	1224	13875	14021	28593	28593					0.023951151236246915
TQCIKILSL	9	Unmodified	_TQCIKILSL_					0	0	0			REV__ENST00000482301.1_1_3:49714104-49717481:+|nuORF	REV__ENST00000482301.1_1_3:49714104-49717481:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7948303222656	2	509.801903	1017.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.851	1	93.851	93.351	94.351	0								0	0	0	0.20678	1	23675	23675		17.113	1.2657	1		+		21019	12099	13876	14022	28594	28594					0.08116144265068215
TQDIHDVL	8	Unmodified	_TQDIHDVL_					0	0	0			REV__ENST00000545991.1_1_12:132625785-132626162:-|nuORF	REV__ENST00000545991.1_1_12:132625785-132626162:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.74090576171875	2	470.740357	939.46616	-0.10788	-5.0784E-05	0.29841	0.00014048	0.19053	8.9692E-05	470.7403656725568	39.299	1.1243	39.388	39.131	40.256	0.088562					102	45	4	0	0	0	0.50815	1	6914	6914		11.64	0	1	704030	+		21020	10662	13877	14023	28595	28595					-0.005993958618546458
TQEKYVLEE	9	Unmodified	_TQEKYVLEE_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2467651367188	2	569.784961	1137.55537	-0.051913	-2.9579E-05	1.2651	0.00072082	1.2132	0.00069124	569.7854883714475	33.14	0.72065	33.215	32.891	33.611	0.074326					44	28	3	0	0	0	0.25921	1	5192	5192		1.4819	0	1	72895			21021	1054	13878	14024	28596	28596					-0.007906056930096383
TQFDRFGDFI	10	Unmodified	_TQFDRFGDFI_					0	0	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7973022460938	2	623.29857	1244.58259	-0.24008	-0.00014964	-3.0774	-0.0019181	-3.3175	-0.0020678	623.7979859213482	73.515	0.076576	73.515	73.464	73.541	0					4	2	2	0	0	0	0.31565	1	17470	17470		12.241	2.1667	1	80911	+		21022	9968	13879	14025	28597	28597					-0.029920773619551255
TQGQDLLI	8	Unmodified	_TQGQDLLI_					0	0	0			REV__ENST00000553741.5_1_14:21488585-21492212:-|nuORF	REV__ENST00000553741.5_1_14:21488585-21492212:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	444.2462158203125	2	444.245275	886.475997	0.59537	0.00026449	1.2942	0.00057494	1.8896	0.00083943	444.245796114447	99.795	1.2965	99.795	99.433	100.73	0					142	72	2	0	0	0	0.53858	1	25533	25533		2.3027	0	1	21068000	+		21023	10046	13880	14026	28598	28598					0.028217921435384596
TQGQNGLEF	9	Unmodified	_TQGQNGLEF_					0	0	0		nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2355651855469	2	497.235439	992.456324	0.49253	0.0002449	-0.1069	-5.3156E-05	0.38563	0.00019175	497.23535228614605	48.158	0.40826	48.238	48.034	48.442	0.080029					25	14	2	0	0	0	0.27332	1	9664	9664		10.074	0.6908	1	134480			21024	2649	13881	14027	28599	28599					-0.04020583867225014
TQGQNGLEF	9	Unmodified	_TQGQNGLEF_					0	0	0		nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	497.235439	992.456324	0.36293	0.00018046	0.35194	0.000175	0.71486	0.00035546	497.2356280761668	48.231	0.41329	48.231	48.07	48.483	0	-0.0034201	0.00027151	NaN	10.074	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152260			21025	2649	13881	14027							-0.04020583867225014
TQHHWLGP	8	Unmodified	_TQHHWLGP_					0	0	0			REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2428283691406	2	488.243401	974.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.188	1	40.188	39.688	40.688	0								0	0	0	0.38822	1	7350	7350		2.8892	0.58649	1		+		21026	8317	13882	14028	28600	28600					-0.01600832839665145
TQHLLFHNQFI	11	Unmodified	_TQHLLFHNQFI_					0	0	0		nc|ENSG00000141446|Q5FWF5-2|ESCO1;ENSG00000141446|ENST00000269214|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.582275390625	3	466.582333	1396.72517	0.0464	2.165E-05	-0.034108	-1.5914E-05	0.012292	5.7353E-06	466.5822811645734	56.497	0.76002	56.563	56.306	57.066	0.066448					66	27	4	0	0	0	0.38987	1	12187	12187		6.6235	0.75532	1	281300			21027	3057	13883	14029	28601	28601					0.04267555100068421
TQHLLFHNQFI	11	Unmodified	_TQHLLFHNQFI_					0	0	0		nc|ENSG00000141446|Q5FWF5-2|ESCO1;ENSG00000141446|ENST00000269214|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	466.582333	1396.72517	0.16216	7.5662E-05	-0.01868	-8.7158E-06	0.14348	6.6946E-05	466.58224554375835	56.626	0.93919	56.626	56.328	57.267	0	0.031301	1.3222E-05	NaN	6.6235	74	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292960			21028	3057	13883	14029							0.04267555100068421
TQIDNNNL	8	Unmodified	_TQIDNNNL_					0	0	0			REV__ENSG00000206422|ENST00000383467|LRRC30	REV__ENSG00000206422|ENST00000383467|LRRC30	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.22747802734375	2	466.227613	930.440674	-0.13218	-6.1627E-05	-0.23452	-0.00010934	-0.36671	-0.00017097	466.22745017881675	31.78	0.75407	31.78	31.552	32.307	0					72	29	4	0	0	0	0.53614	1	4883	4883		3.9444	0	1	523660	+		21029	10984	13884	14030	28602	28602					-0.027328703842840696
TQIHGLFTF	9	Unmodified	_TQIHGLFTF_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2684936523438	2	532.282192	1062.54983	0.47356	0.00025207	-0.27896	-0.00014849	0.1946	0.00010358	532.2821022766212	60.595	1.1584	60.595	60.26	61.418	0					103	41	3	0	0	0	0.25209	1	13689	13689		12.532	1.7076	1	869620	+		21030	8707	13885	14031	28603	28603					0.021057603058579843
TQIHGLFTF	9	Unmodified	_TQIHGLFTF_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2676391601562	2	532.282192	1062.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.145	1	64.145	63.645	64.645	0								0	0	0	0.25692	1	14624	14624		7.9102	1.7044	1		+		21031	8707	13885	14031	28604	28604					0.021057603058579843
TQIHGLFTF	9	Unmodified	_TQIHGLFTF_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.268310546875	2	532.282192	1062.54983	0.36196	0.00019266	-0.2089	-0.00011119	0.15306	8.1472E-05	532.282096816777	60.542	1.2032	60.615	60.211	61.414	0.073421					105	41	4	0	0	0	0.25209	1	13547	13547		12.532	1.7076	1	820850	+		21032	8707	13885	14031	28605	28605					0.021057603058579843
TQINSIFE	8	Unmodified	_TQINSIFE_					0	0	0		tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.19854736328125	2	476.242732	950.470912	-0.43818	-0.00020868	1.4839	0.00070672	1.0458	0.00049804	476.24347555799227	26.351	0.08532	26.351	26.316	26.401	0					10	6	2	0	0	0	0.3576	1	3245	3245		2.3027	0	1	7026.7			21033	13620	13886	14032	28606	28606					-0.006305117190890996
TQKDRCMA	8	Unmodified	_TQKDRCMA_					0	0	0			REV__ZNF804A|p.E289Q|1|0.13|ENSG00000170396|chr2:184936261-184936261|G/C|missense_variant	REV__ZNF804A|p.E289Q|1|0.13|ENSG00000170396|chr2:184936261-184936261|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.72076416015625	2	476.720587	951.426621	0.098404	4.6911E-05	0.57192	0.00027265	0.67032	0.00031956	476.7207466352073	87.407	0.87396	87.407	87.211	88.085	0					48	31	2	0	0	0	0.54081	1	21744	21744		0.79363	0	1	150830	+		21034	13346	13887	14033	28607	28607					-0.051035624085898235
TQKDRCMA	8	Unmodified	_TQKDRCMA_					0	0	0			REV__ZNF804A|p.E289Q|1|0.13|ENSG00000170396|chr2:184936261-184936261|G/C|missense_variant	REV__ZNF804A|p.E289Q|1|0.13|ENSG00000170396|chr2:184936261-184936261|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.72088623046875	2	476.720587	951.426621	-0.049116	-2.3415E-05	0.52838	0.00025189	0.47926	0.00022847	476.7207799892679	87.528	1.0711	87.558	87.096	88.167	0.030037					62	40	2	0	0	0	0.54081	1	21517	21517		0.79363	0	1	147520	+		21035	13346	13887	14033	28608	28608					-0.051035624085898235
TQKKKAERQF	10	Unmodified	_TQKKKAERQF_					0	0	0		ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000261739|ENST00000562295|GOLGA8S;ENSG00000183629|ENST00000525590|GOLGA8G	ENSG00000153684|ENST00000526619|GOLGA8F	ENSG00000153684|ENST00000526619|GOLGA8F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.8624877929688	2	632.362036	1262.70952	0.33834	0.00021395	-0.62183	-0.00039322	-0.2835	-0.00017927	632.3618103004964	104.55	0.43149	104.59	104.36	104.8	0.034004					78	41	3	0	0	0	0.46746	1	26698	26698		1.4819	0.15237	1	169110			21036	3529	13888	14034	28609	28609					0.08867268583003352
TQKTPPTPQ	9	Unmodified	_TQKTPPTPQ_					0	0	0		nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR	nc|ENSG00000168453|O43593-2|HR	nc|ENSG00000168453|O43593-2|HR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.76995849609375	2	499.269281	996.52401	0.42444	0.00021191	-1.2653	-0.00063174	-0.84089	-0.00041983	499.7688223890684	68.42	0.7253	68.483	68.221	68.946	0.063507					60	27	3	0	0	0	0.2546	1	15759	15759		12.241	0.60036	1	318040			21037	4291	13889	14035	28610	28610					0.02560866063549838
TQLEAAPWGW	10	Unmodified	_TQLEAAPWGW_					0	0	0		ENST00000475843.5_1_2:220462835-220466521:+|nuORF	ENST00000475843.5_1_2:220462835-220466521:+|nuORF	ENST00000475843.5_1_2:220462835-220466521:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.767578125	2	579.782556	1157.55056	0.49797	0.00028871	-1.8798	-0.0010899	-1.3819	-0.00080118	579.7816561883693	91.456	0.26517	91.456	91.319	91.584	0					15	9	2	0	0	0	0.31496	1	22933	22933		13.906	2.2658	1	93773			21038	6711	13890	14036	28611	28611					-0.021914450451276934
TQMNRAELSL	10	Unmodified	_TQMNRAELSL_					0	0	0			REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.3015747070312	2	581.79788	1161.58121	0.32401	0.00018851	-1.8564	-0.0010801	-1.5324	-0.00089155	582.3005082031158	89.397	0.42421	89.397	89.194	89.618	0					18	15	2	0	0	0	0.33926	2	22324	22319;22324		18.373	0.32975	1	97045	+		21039	12397	13891	14037	28612;28613	28613					0.006879652776433431
TQPGTGWVQF	10	Unmodified	_TQPGTGWVQF_					0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7747192382812	2	560.774731	1119.53491	0.55784	0.00031282	0.14849	8.3271E-05	0.70634	0.0003961	560.7749155213437	70.638	0.6913	70.638	70.418	71.109	0					50	23	3	0	0	0	0.12534	1	16624	16624		42.312	7.9108	1	205110			21040	3651	13892	14038	28614	28614					-0.020077315621620073
TQPGTGWVQF	10	Unmodified	_TQPGTGWVQF_					0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.27734375	2	560.774731	1119.53491	0.70232	0.00039384	-0.0075859	-4.254E-06	0.69474	0.00038959	560.7745891087824	70.623	0.54439	70.684	70.425	70.969	0.060562					32	17	2	0	0	0	0.29918	1	16425	16425		22.658	3.2961	1	199670			21041	3651	13892	14038	28615	28615					-0.020077315621620073
TQPRALQRP	9	Unmodified	_TQPRALQRP_					0	0	0		ENST00000514254.2_1_12:124412777-124412945:-|nuORF	ENST00000514254.2_1_12:124412777-124412945:-|nuORF	ENST00000514254.2_1_12:124412777-124412945:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.8107299804688	2	533.809439	1065.60433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.875	1	68.875	68.375	69.375	0								0	0	0	0.28724	1	16063	16063		1.6526	0.17072	1				21042	6928	13893	14039	28616	28616					0.07414772177253326
TQRGALFLLF	10	Unmodified	_TQRGALFLLF_					0	0	0		ENSG00000102359|ENST00000373004|SRPX2;ENST00000481988.1_1_X:99901319-99905990:+|nuORF	ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.3402709960938	2	583.340041	1164.66553	0.98395	0.00057398	-0.38365	-0.0002238	0.6003	0.00035018	583.3397413291866	80.943	0.93044	80.943	80.702	81.632	0					77	31	4	0	0	0	0.022949	2	19760	19719;19760		65.474	23.379	1	1230200			21043	1310	13894	14040	28617;28618	28618					0.0897828415670574
TQRGALFLLF	10	Unmodified	_TQRGALFLLF_					0	0	0		ENSG00000102359|ENST00000373004|SRPX2;ENST00000481988.1_1_X:99901319-99905990:+|nuORF	ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.34033203125	2	583.340041	1164.66553	0.88348	0.00051537	-0.30045	-0.00017526	0.58303	0.0003401	583.3398175618976	80.915	0.93865	80.939	80.708	81.647	0.023605					82	33	4	0	0	0	0.051426	3	19604	19556;19604;19647		57.249	17.277	1	1022100			21044	1310	13894	14040	28619;28620;28621	28620					0.0897828415670574
TQTHPTEE	8	Unmodified	_TQTHPTEE_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7114562988281	2	471.711796	941.40904	0.12121	5.7174E-05	-0.26491	-0.00012496	-0.1437	-6.7785E-05	471.7116180840167	37.967	0.26552	37.967	37.864	38.129	0					14	8	2	0	0	0	0.54097	1	6697	6697		0.69038	0	1	19395			21045	248	13895	14041	28622	28622					-0.0640086313824213
TQTHPTEE	8	Unmodified	_TQTHPTEE_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	471.711796	941.40904	0.05435	2.5637E-05	-0.77994	-0.00036791	-0.72559	-0.00034227	471.71157716251963	37.931	0.33927	38.015	37.805	38.144	0.08448	0.024216	-0.00022105	NaN	0.69038	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14981			21046	248	13895	14041							-0.0640086313824213
TQTLVREYF	9	Unmodified	_TQTLVREYF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.8033447265625	2	578.803488	1155.59242	0.68789	0.00039815	-0.4594	-0.0002659	0.22849	0.00013225	578.8030879032791	54.317	0.42206	54.317	54.098	54.52	0					37	16	3	0	0	0	0.0087877	2	11613	11613;11659		70.929	41.847	1	329320			21047	5695	13896	14042	28623;28624	28623					0.020851106434292888
TQTLVREYF	9	Unmodified	_TQTLVREYF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.8032836914062	2	578.803488	1155.59242	0.67472	0.00039053	-0.0041939	-2.4274E-06	0.67053	0.0003881	578.8029475821536	54.374	0.49286	54.439	54.179	54.672	0.065128					41	24	3	0	0	0	0.018907	2	11470	11470;11518		59.052	36.316	1	296280			21048	5695	13896	14042	28625;28626	28625					0.020851106434292888
TRCEDEEQDE	10	Unmodified	_TRCEDEEQDE_					0	0	0			REV__TTC12-LUC7L2|1|fusion	REV__TTC12-LUC7L2|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2334594726562	2	627.232964	1252.45137	-0.12974	-8.138E-05	0.22856	0.00014336	0.098818	6.1982E-05	627.2335190930465	34.493	2.3072	34.493	33.739	36.047	0					225	87	4	0	0	0	0.4753	1	5992	5992		0	0	1	171510	+		21049	9609	13897	14043	28627	28627					-0.16475300582806085
TREIEEKN	8	Unmodified	_TREIEEKN_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.7614440917969	2	509.76182	1017.50909	-0.068403	-3.4869E-05	-0.3962	-0.00020197	-0.46461	-0.00023684	509.76161082593205	25.316	0.35888	25.412	25.259	25.618	0.096073					61	30	3	0	0	0	0.53926	1	2842	2842		1.8442	1.8442	1	46443	+		21050	8885	13898	14044	28628	28628					0.0010337419556663008
TREKIYAI	8	Unmodified	_TREKIYAI_					0	0	0		ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2898864746094	2	497.290017	992.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.111	1	17.111	16.611	17.611	0								0	0	0	0.38822	1	859	859		0.79363	0	1				21051	2697	13899	14045	28629	28629					0.06890046822900331
TRENTDSLELS	11	Unmodified	_TRENTDSLELS_					0	0	0		ENST00000569471.1_1_16:28880556-28883354:+|nuORF;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1	ENST00000569471.1_1_16:28880556-28883354:+|nuORF	ENST00000569471.1_1_16:28880556-28883354:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.8045654296875	2	632.804414	1263.59427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.684	1	23.684	23.184	24.184	0								0	0	0	0.34212	1	2475	2475		0	0	1				21052	4735	13900	14046	28630	28630					-0.026979251292459594
TRFNRYRHL	9	Unmodified	_TRFNRYRHL_					0	0	0			REV__PWP2-TRAPPC10|1|fusion;REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.3535766601562	2	631.846887	1261.67922	0.30912	0.00019532	1.396	0.00088208	1.7052	0.0010774	631.8482070405266	74.754	0.19366	74.754	74.661	74.854	0					9	6	2	0	0	0	0.25845	1	17880	17880		2.0598	0.21551	1	84875	+		21053	12968;11060	13901	14047	28631	28631					0.05884954708494661
TRFYSFDPF	9	Unmodified	_TRFYSFDPF_					0	0	0			REV__ENSG00000205929|ENST00000479548|C21orf62	REV__ENSG00000205929|ENST00000479548|C21orf62	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2774658203125	2	590.277106	1178.53966	0.17966	0.00010605	-0.27591	-0.00016286	-0.096246	-5.6812E-05	590.2768675828618	35.049	0.67289	35.049	34.776	35.449	0					39	23	2	0	0	0	0.33978	1	5754	5754		1.4819	0.28856	1	37106	+		21054	10981	13902	14048	28632	28632					-0.04246847419403821
TRGFDILRLF	10	Unmodified	_TRGFDILRLF_					0	0	0		ENST00000525186.1_1_8:6527658-6527730:-|nuORF	ENST00000525186.1_1_8:6527658-6527730:-|nuORF	ENST00000525186.1_1_8:6527658-6527730:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.2660827636719	3	413.239907	1236.69789	0.14085	5.8206E-05	-0.39057	-0.0001614	-0.24972	-0.00010319	413.23969519603224	62.068	0.22522	62.141	62.011	62.236	0.073421					12	7	2	0	0	0	0.3184	1	13821	13821		1.7423	0.28716	1	86980			21055	6985	13903	14049	28633	28633					0.08901071559694174
TRGFDILRLF	10	Unmodified	_TRGFDILRLF_					0	0	0		ENST00000525186.1_1_8:6527658-6527730:-|nuORF	ENST00000525186.1_1_8:6527658-6527730:-|nuORF	ENST00000525186.1_1_8:6527658-6527730:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	413.239907	1236.69789	0.49963	0.00020647	-0.96832	-0.00040015	-0.46869	-0.00019368	413.5740186212602	61.813	0.6566	61.813	61.657	62.314	0	-0.16405	-0.0003307	NaN	1.7423	36	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148070			21056	6985	13903	14049							0.08901071559694174
TRGMRWGEQ	9	Unmodified	_TRGMRWGEQ_					0	0	0		ENST00000598629.5_1_19:58426733-58427871:-|nuORF	ENST00000598629.5_1_19:58426733-58427871:-|nuORF	ENST00000598629.5_1_19:58426733-58427871:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2694091796875	2	560.769457	1119.52436	0.12627	7.0806E-05	0.85967	0.00048208	0.98593	0.00055288	560.7689933028473	90.364	0.66689	90.398	90.216	90.883	0.034065					67	27	4	0	0	0	0.31389	1	22580	22580		4.897	0.95262	1	413050			21057	7289	13904	14050	28634	28634					-0.03062037488234637
TRKVSRDYW	9	Unmodified	_TRKVSRDYW_					0	0	0		ENST00000367837.9_1_6:135307892-135307943:-|nuORF	ENST00000367837.9_1_6:135307892-135307943:-|nuORF	ENST00000367837.9_1_6:135307892-135307943:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8204956054688	2	605.820004	1209.62546	0.31442	0.00019048	-0.0049126	-2.9761E-06	0.30951	0.00018751	605.8199532739047	31.406	0.61612	31.48	31.284	31.9	0.073782					75	29	4	0	0	0	0.34898	1	4673	4673		0	0	1	167890			21058	6179	13905	14051	28635	28635					0.029027374861243516
TRLGAQWA	8	Unmodified	_TRLGAQWA_					0	0	0			REV__ENST00000445654.2_1_11:70417416-70506001:-|nuORF	REV__ENST00000445654.2_1_11:70417416-70506001:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.74578857421875	2	451.745776	901.477	0.090815	4.1025E-05	-0.24721	-0.00011167	-0.15639	-7.0649E-05	451.7456737017352	49.675	0.61695	49.749	49.482	50.099	0.074341					34	21	3	0	0	0	0.53026	1	10074	10074		7.9102	0.62092	1	150180	+		21059	9877	13906	14052	28636	28636					0.02232051303087701
TRLRIIKL	8	Unmodified	_TRLRIIKL_					0	0	0		nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG821|P63135|ERVK-7_pol	nc|ENSG851|Q9QC07|ERVK-18_pol	nc|ENSG851|Q9QC07|ERVK-18_pol	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.852783203125	2	506.853119	1011.69168	-0.12201	-6.184E-05	-0.13344	-6.7634E-05	-0.25545	-0.00012947	506.85295430011547	112.14	1.2356	112.14	111.92	113.16	0					352	141	4	0	0	0	0.54097	2	28698	28698;28812		0.69038	0	1	8677500			21060	7640	13907	14053	28637;28638	28637					0.18630598118829766
TRLRIIKL	8	Unmodified	_TRLRIIKL_					0	0	0		nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG821|P63135|ERVK-7_pol	nc|ENSG851|Q9QC07|ERVK-18_pol	nc|ENSG851|Q9QC07|ERVK-18_pol	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.852783203125	2	506.853119	1011.69168	0.22803	0.00011558	-0.35413	-0.00017949	-0.1261	-6.3915E-05	506.85281935187265	112.12	0.95386	112.14	111.94	112.89	0.014595					287	110	4	0	0	0	0.54097	3	28591	28591;28627;28664		0.69038	0	1	5817000			21061	7640	13907	14053	28639;28640;28641	28639					0.18630598118829766
TRLTANSESA	10	Unmodified	_TRLTANSESA_					0	0	0			REV__ENST00000472823.5_1_6:29595320-29596997:-|nuORF	REV__ENST00000472823.5_1_6:29595320-29596997:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7642211914062	2	525.264727	1048.5149	-0.082908	-4.3548E-05	0.8108	0.00042589	0.72789	0.00038234	525.2673012870159	107.26	0.27217	107.26	107.1	107.37	0					38	23	2	0	0	0	0.46899	1	27653	27653		1.1933	0	1	26722	+		21062	12038	13908	14054	28642	28642					-0.007415272927573824
TRLYLKQKAT	10	Unmodified	_TRLYLKQKAT_					0	0	0			REV__ENSG00000244414|ENST00000320493|CFHR1	REV__ENSG00000244414|ENST00000320493|CFHR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3561401367188	2	611.36933	1220.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.56	1	88.593	88.093	89.093	0.032257								0	0	0	0.33762	1	21905	21905		2.9952	0	1		+		21063	11071	13909	14055	28643	28643					0.12257340731162003
TRLYLKQKAT	10	Unmodified	_TRLYLKQKAT_					0	0	0			REV__ENSG00000244414|ENST00000320493|CFHR1	REV__ENSG00000244414|ENST00000320493|CFHR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3564453125	2	611.36933	1220.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.861	1	88.893	88.393	89.393	0.032257								0	0	0	0.33528	1	21997	21997		5.7319	0	1		+		21064	11071	13909	14055	28644	28644					0.12257340731162003
TRPRCPVQT	9	Unmodified	_TRPRCPVQT_					0	0	0		ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant;nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B	ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.28173828125	2	529.2822	1056.54985	0.23458	0.00012416	-0.543	-0.0002874	-0.30841	-0.00016324	529.2817135792413	15.729	0.16053	15.801	15.738	15.898	0.072399					29	20	2	0	0	0	0.33978	1	553	553		1.4819	0	1	14483			21065	36	13910	14056	28645	28645					0.02383437034200142
TRPRSQSHS	9	Unmodified	_TRPRSQSHS_					0	0	0		ENST00000426911.2_1_X:136066981-136067308:-|nuORF	ENST00000426911.2_1_X:136066981-136067308:-|nuORF	ENST00000426911.2_1_X:136066981-136067308:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2710571289062	2	528.270678	1054.5268	0.33122	0.00017497	0.6104	0.00032246	0.94162	0.00049743	528.270759747642	101.52	0.85803	101.52	101.05	101.91	0					104	57	2	0	0	0	0.27929	1	25997	25997		9.3831	1.473	1	417790			21066	6473	13911	14057	28646	28646					0.001721342410746729
TRQAHGFVV	9	Unmodified	_TRQAHGFVV_					0	0	0			REV__PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant	REV__PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2119140625	2	507.777608	1013.54066	-0.063145	-3.2064E-05	-1.88	-0.00095464	-1.9432	-0.0009867	507.77682969560254	46.052	0.33945	46.052	45.927	46.267	0					18	11	2	0	0	0	0.25699	1	9109	9109		3.5965	0.31518	1	45156	+		21067	10910	13912	14058	28647	28647					0.034434117401815456
TRRKKSQFE	9	Unmodified	_TRRKKSQFE_					0	0	0			REV__UBR7|p.R416T|1|0.18|ENSG00000012963|chr14:93227004-93227004|G/C|missense_variant	REV__UBR7|p.R416T|1|0.18|ENSG00000012963|chr14:93227004-93227004|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7591552734375	2	590.333279	1178.652	0.32587	0.00019237	2.2504	0.0013285	2.5763	0.0015209	590.3339243980106	56.471	0.15687	56.471	56.355	56.512	0					7	5	2	0	0	0	0.25699	1	12256	12256		3.5965	0	1	38862	+		21068	13326	13913	14059	28648	28648					0.06982426377476258
TRRLSGPP	8	Unmodified	_TRRLSGPP_					0	0	0		ENST00000262376.10_1_16:4930962-4931145:+|nuORF	ENST00000262376.10_1_16:4930962-4931145:+|nuORF	ENST00000262376.10_1_16:4930962-4931145:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.2595520019531	2	442.259051	882.503549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.385	1	80.385	79.885	80.885	0								0	0	0	0.38822	1	19581	19581		2.3027	0	1				21069	5870	13914	14060	28649	28649					0.057597401944121884
TRRQIFSL	8	Unmodified	_TRRQIFSL_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A;MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.3841857910156	2	510.801083	1019.58761	0.32988	0.0001685	2.4502	0.0012516	2.7801	0.0014201	511.30403573898667	105.04	0.052612	105.07	105.05	105.1	0.034004					6	5	2	0	0	0	0.3576	1	26877	26877		7.2892	0.56607	1	23119			21070	7166	13915	14061	28650	28650					0.07860271291315257
TRRRKQAF	8	Unmodified	_TRRRKQAF_					0	0	0			REV__nc|ENSG00000136895|Q5VVW2-3|GARNL3	REV__nc|ENSG00000136895|Q5VVW2-3|GARNL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.81787109375	2	531.817599	1061.62064	0.62734	0.00033363	-1.0408	-0.0005535	-0.41344	-0.00021987	531.8169825199466	85.795	0.91822	85.82	85.492	86.41	0.025169					61	33	3	0	0	0	0.54081	1	21176	21176		0.79363	0.79363	1	280160	+		21071	9258	13916	14062	28651	28651					0.09229898134026371
TRSRAKDDIKK	11	Unmodified	_TRSRAKDDIKK_					0	0	0		ENST00000455335.2_1_7:72971818-72971908:-|nuORF;nc|ENSG00000106635|Q9BQE9-4|BCL7B;nc|ENSG00000106635|Q9BQE9-3|BCL7B;ENSG00000106635|ENST00000223368|BCL7B;ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C	ENST00000455335.2_1_7:72971818-72971908:-|nuORF	ENST00000455335.2_1_7:72971818-72971908:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.8665466308594	3	439.924759	1316.75245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.034	1	13.034	12.534	13.534	0								0	0	0	0.34212	1	152	152		0	0	1				21072	1127	13917	14063	28652	28652					0.10674038640422623
TRSTVITA	8	Unmodified	_TRSTVITA_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.7308654785156	2	424.745442	847.476331	0.00026569	1.1285E-07	-0.94994	-0.00040348	-0.94968	-0.00040337	424.7449163694879	26.732	0.33451	26.732	26.574	26.909	0					34	21	2	0	0	0	0.3576	1	3301	3301		0	0	1	15512			21073	3224	13918	14064	28653	28653					0.046492118633523205
TRTATNATTTT	11	Unmodified	_TRTATNATTTT_					0	0	0		sp|P03200|GP350_EBVB9EnvelopeglycoproteinGP350OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF1PE=1SV=1	sp|P03200|GP350_EBVB9EnvelopeglycoproteinGP350OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF1PE=1SV=1	sp|P03200|GP350_EBVB9EnvelopeglycoproteinGP350OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.78759765625	2	569.788566	1137.56258	-0.26438	-0.00015064	-0.0083517	-4.7587E-06	-0.27273	-0.0001554	569.7883813704095	24.277	0.2212	24.277	24.187	24.408	0					36	21	2	0	0	0	0.41892	1	2669	2669		0	0	1	20629			21074	13384	13919	14065	28654	28654					-0.0006987309261603514
TRTKKKKKK	9	Unmodified	_TRTKKKKKK_					0	0	0			REV__ENST00000427154.1_1_1:23346896-23414436:-|nuORF	REV__ENST00000427154.1_1_1:23346896-23414436:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.892822265625	2	573.395682	1144.77681	0.26418	0.00015148	-0.7923	-0.0004543	-0.52812	-0.00030282	573.3956732863256	111.88	0.11979	111.9	111.81	111.93	0.014595					21	13	2	0	0	0	0.25996	1	28527	28527		0.45834	0.45834	1	2132700	+		21075	11835	13920	14066	28655	28655					0.21021343584629903
TRTPRRTRRV	10	Unmodified	_TRTPRRTRRV_					0	0	0		ENST00000494138.4_1_1:151252674-151254299:-|nuORF;ENST00000447795.3_1_1:151252674-151254135:-|nuORF	ENST00000494138.4_1_1:151252674-151254299:-|nuORF	ENST00000494138.4_1_1:151252674-151254299:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.60113525390625	3	433.600721	1297.78033	0.36951	0.00016022	0.39295	0.00017039	0.76246	0.0003306	433.6008573156836	96.981	0.61459	97.022	96.824	97.438	0.040855					50	29	3	0	0	0	0.47199	1	24491	24491		0.62683	0.62683	1	147030			21076	6552	13921	14067	28656	28656					0.14335406411191798
TRVRTWPADL	10	Unmodified	_TRVRTWPADL_					0	0	0			REV__ENST00000332290.3_1_6:170102440-170102521:+|nuORF	REV__ENST00000332290.3_1_6:170102440-170102521:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5611267089844	3	405.559528	1213.65676	0.35228	0.00014287	2.8541	0.0011575	3.2063	0.0013004	405.8951491378058	65.997	0.43262	66.064	65.847	66.28	0.066872					24	16	2	0	0	0	0.40359	1	15042	15042		7.0371	2.5082	1	180300	+		21077	11424	13922	14068	28657	28657					0.05847310520221072
TRWLLIIF	8	Unmodified	_TRWLLIIF_					0	0	0			REV__nc|ENSG00000156113|Q12791-6|KCNMA1	REV__nc|ENSG00000156113|Q12791-6|KCNMA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.319091796875	2	531.328945	1060.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.506	1	89.506	89.006	90.006	0								0	0	0	0.38822	1	22352	22352		2.3027	0	1		+		21078	9746	13923	14069	28658	28658					0.11544104478934969
TRWLVALSW	9	Unmodified	_TRWLVALSW_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2994995117188	2	566.319109	1130.62366	0.43342	0.00024546	3.1489	0.0017833	3.5823	0.0020287	566.8233981515507	99.31	0.40701	99.31	99.078	99.485	0					41	26	3	0	0	0	0.3182	1	25283	25283		4.3292	0	1	152700			21079	4319	13924	14070	28659	28659					0.06357728468174173
TRYLHVEG	8	Unmodified	_TRYLHVEG_					0	0	0		nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF;RBPJ|p.G218Efs*45|1|0.76|ENSG00000168214|chr4:26424456-26424456|G/-|frameshift_variant;ENST00000514380.5_1_4:26322378-26431729:+|nuORF	nc|ENSG00000168214|Q06330-3|RBPJ	nc|ENSG00000168214|Q06330-3|RBPJ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2701416015625	2	487.756341	973.498129	-0.095731	-4.6693E-05	0.5036	0.00024564	0.40787	0.00019894	487.75638643834435	45.682	0.52909	45.768	45.503	46.032	0.085617					27	20	2	0	0	0	0.3576	1	8819	8819		2.3027	0	1	41423			21080	4269	13925	14071	28660	28660					0.010320166119640817
TSAELEVQR	9	Unmodified	_TSAELEVQR_					0	0	0		ENSG00000159674|ENST00000290902|SPON2	ENSG00000159674|ENST00000290902|SPON2	ENSG00000159674|ENST00000290902|SPON2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7608642578125	2	516.769645	1031.52474	-0.06957	-3.5951E-05	0.43889	0.0002268	0.36932	0.00019085	516.7698129799455	30.76	0.40142	30.76	30.55	30.951	0					29	20	2	0	0	0	0.24819	1	4499	4499		10.8	5.0677	1	47044			21081	3737	13926	14072	28661	28661					0.010236607126216768
TSAELEVQR	9	Unmodified	_TSAELEVQR_					0	0	0		ENSG00000159674|ENST00000290902|SPON2	ENSG00000159674|ENST00000290902|SPON2	ENSG00000159674|ENST00000290902|SPON2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.769775390625	2	516.769645	1031.52474	-0.057382	-2.9653E-05	0.42444	0.00021934	0.36706	0.00018968	516.7697539413308	30.699	0.42947	30.775	30.58	31.009	0.075403					38	24	2	0	0	0	0.24819	1	4376	4376		10.8	5.5026	1	35956			21082	3737	13926	14072	28662	28662					0.010236607126216768
TSAHERQLF	9	Unmodified	_TSAHERQLF_					0	0	0			REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF	REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7614135742188	2	544.777805	1087.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.241	1	89.273	88.773	89.773	0.032257								0	0	0	0.25361	1	22113	22113		8.5933	0	1		+		21083	8851	13927	14073	28663	28663					0.0007878666935994261
TSAQVDDLK	9	Unmodified	_TSAQVDDLK_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7498779296875	2	488.750921	975.48729	-0.08678	-4.2414E-05	-1.0003	-0.0004889	-1.0871	-0.00053132	488.7502391369653	33.847	0.25499	33.921	33.806	34.061	0.074322					20	11	3	0	0	0	0.30757	1	5322	5322		5.7319	0	1	27261			21084	288	13928	14074	28664	28664					-0.0014343055298695617
TSDEHFRIH	9	Unmodified	_TSDEHFRIH_					0	0	0			REV__ENST00000522504.5_1_8:140743306-140893377:-|nuORF	REV__ENST00000522504.5_1_8:140743306-140893377:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2719116210938	2	571.272887	1140.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.746	1	28.746	28.246	29.246	0								0	0	0	0.2927	1	3930	3930		0.52476	0	1		+		21085	10124	13929	14075	28665	28665					-0.03342401335999057
TSDPTEATAV	10	Unmodified	_TSDPTEATAV_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF;ENSG00000067225|ENST00000335181|PKM	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2324523925781	2	496.232561	990.45057	0.39127	0.00019416	-0.55771	-0.00027675	-0.16644	-8.2593E-05	496.2322206573358	37.383	0.39948	37.383	37.177	37.577	0					25	14	3	0	0	0	0.38912	2	6507	6497;6507		13.042	3.6593	1	33520			21086	7457	13930	14076	28666;28667	28667					-0.04503727169571903
TSEAFGDV	8	Unmodified	_TSEAFGDV_					0	0	0			REV__nc|ENSG00000196712|P21359-3|NF1	REV__nc|ENSG00000196712|P21359-3|NF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.1818542480469	2	413.184883	824.355213	0.36942	0.00015264	-4.2087	-0.001739	-3.8393	-0.0015863	413.1815509302104	81.142	0.76492	81.166	80.882	81.647	0.023605					63	27	3	0	0	0	0.3565	1	19657	19657		30.225	5.5509	1	447560	+		21087	10832	13931	14077	28668	28668					-0.0639903556993886
TSEAPQPPR	9	Unmodified	_TSEAPQPPR_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.25909423828125	2	491.751256	981.487959	-0.20201	-9.9339E-05	-0.28276	-0.00013905	-0.48477	-0.00023839	491.75115165822046	24.45	0.68571	24.45	24.065	24.751	0					150	59	3	0	0	0	0.2094	1	2660	2660		22.736	12.662	1	123850			21088	2223	13932	14078	28669	28669					-0.0035259111327832215
TSEAPQPPR	9	Unmodified	_TSEAPQPPR_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2589416503906	2	491.751256	981.487959	-0.019766	-9.7201E-06	-0.36278	-0.0001784	-0.38255	-0.00018812	491.7511011481364	24.207	0.7257	24.307	23.967	24.693	0.099739					172	68	3	0	0	0	0.24533	1	2534	2534		12.241	6.5088	1	103200			21089	2223	13932	14078	28670	28670					-0.0035259111327832215
TSESSSPF	8	Unmodified	_TSESSSPF_					0	0	0			REV__ENSG00000164626|ENST00000359534|KCNK5	REV__ENSG00000164626|ENST00000359534|KCNK5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.1791076660156	2	421.18234	840.350128	0.38756	0.00016323	-2.3466	-0.00098833	-1.959	-0.0008251	421.1789469245037	81.147	0.63177	81.17	80.94	81.571	0.023605					53	22	4	0	0	0	0.41225	2	19670	19670;19711		24.674	1.5255	1	334940	+		21090	9998	13933	14079	28671;28672	28671					-0.0764333943255906
TSESSSPF	8	Unmodified	_TSESSSPF_					0	0	0			REV__ENSG00000164626|ENST00000359534|KCNK5	REV__ENSG00000164626|ENST00000359534|KCNK5	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	421.18234	840.350128	0.38756	0.00016323	-2.3466	-0.00098833	-1.959	-0.0008251	421.1789469245037	81.147	0.63177	81.17	80.94	81.571	0.023605	0.016135	0.00035398	NaN	24.674	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334940	+		21091	9998	13933	14079							-0.0764333943255906
TSETPQPPR	9	Unmodified	_TSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.75653076171875	2	506.756538	1011.49852	-0.28242	-0.00014312	0.19884	0.00010076	-0.083581	-4.2355E-05	506.75658702842554	24.941	1.5981	24.941	24.137	25.735	0					378	128	4	0	0	0	0.0072241	7	2869	2672;2712;2750;2791;2832;2869;2906		75.761	46.679	1	452150			21092	5045	13934	14080	28673;28674;28675;28676;28677;28678;28679	28678					-0.006766084588548438
TSETPQPPR	9	Unmodified	_TSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7563781738281	2	506.756538	1011.49852	-0.081817	-4.1461E-05	0.11262	5.7069E-05	0.0308	1.5608E-05	506.75651966604414	24.757	1.8675	24.853	24.01	25.878	0.096073					425	166	4	0	0	0	0.0093779	8	2565	2496;2529;2565;2603;2642;2678;2714;2749		69.105	42.221	1	392070			21093	5045	13934	14080	28680;28681;28682;28683;28684;28685;28686;28687	28682					-0.006766084588548438
TSFSVSTR	8	Unmodified	_TSFSVSTR_					0	0	0			REV__ENST00000534728.1_1_11:124983408-124983723:+|nuORF	REV__ENST00000534728.1_1_11:124983408-124983723:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.85589599609375	2	442.727249	883.439946	-0.2208	-9.7755E-05	1.0506	0.00046515	0.82984	0.00036739	442.7276624971719	29.533	0.3662	29.611	29.451	29.818	0.078289					29	20	2	0	0	0	0.3576	1	4050	4050		7.2892	0	1	23084	+		21094	12377	13935	14081	28688	28688					-0.006436650333171201
TSFTPDSS	8	Unmodified	_TSFTPDSS_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.17901611328125	2	421.18234	840.350128	0.98775	0.00041602	-3.1529	-0.0013279	-2.1651	-0.00091191	421.17851577127055	81.138	0.78851	81.138	80.873	81.662	0					53	26	4	0	0	0	0.42348	2	19823	19823;19829		23.148	0	1	225440			21095	4640	13936	14082	28689;28690	28689					-0.07643339432570428
TSGPCPRTS	9	Unmodified	_TSGPCPRTS_					0	0	0			REV__ENST00000467148.1_1_20:62201918-62203710:-|nuORF	REV__ENST00000467148.1_1_20:62201918-62203710:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.209716796875	2	453.210909	904.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.04	1	107.04	106.54	107.54	0								0	0	0	0.28527	1	27616	27616		2.0598	0	1		+		21096	12007	13937	14083	28691	28691					-0.04876195427846142
TSIAMKQLLC	10	Unmodified	_TSIAMKQLLC_					0	0	0			REV__ENST00000477239.1_1_20:23350773-23351022:+|nuORF	REV__ENST00000477239.1_1_20:23350773-23351022:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2847290039062	2	554.29867	1106.58279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.378	1	75.422	74.922	75.922	0.044037								0	0	0	0.33215	1	17892	17892		9.3831	0.63772	1		+		21097	12059	13938	14084	28692	28692					0.03375883042053829
TSIEDQDEL	9	Unmodified	_TSIEDQDEL_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2354125976562	2	525.235301	1048.45605	0.356	0.00018698	0.58219	0.00030578	0.93819	0.00049277	525.2357771169643	47.643	0.40964	47.643	47.467	47.877	0					17	13	2	0	0	0	0.17428	1	9592	9592		21.537	7.6309	1	53580			21098	5651	13939	14085	28693	28693					-0.06624048377761937
TSIEDQDEL	9	Unmodified	_TSIEDQDEL_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	525.235301	1048.45605	0.38161	0.00020043	1.5557	0.0008171	1.9373	0.0010175	525.2361379878286	47.54	0.38474	47.623	47.461	47.846	0.083096	-0.010098	0.00049502	NaN	21.537	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83049			21099	5651	13939	14085							-0.06624048377761937
TSIFFEVEDY	10	Unmodified	_TSIFFEVEDY_					0	0	0			REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.2874145507812	2	625.284794	1248.55504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.946	1	99.988	99.488	100.49	0.042839								0	0	0	0.33892	1	25374	25374		1.4819	0.28856	1		+		21100	13317	13940	14086	28694	28694					-0.05930025412840223
TSILAKQRE	9	Unmodified	_TSILAKQRE_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.303655	1044.59276	0.21754	0.00011384	0.27522	0.00014402	0.49276	0.00025786	523.3036921489829	82.816	2.4442	82.838	81.969	84.413	0.021744					340	93	4	0	0	0	0.32112	1	20554	20554		3.9444	3.9444	1	3939600			21101	1541	13941	14087	28695	28695					0.07224530363305348
TSIVVLVER	9	Unmodified	_TSIVVLVER_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7642517089844	2	508.310949	1014.60735	0.56698	0.0002882	0.5071	0.00025776	1.0741	0.00054597	508.3112771733817	54.509	0.61074	54.509	54.239	54.85	0					38	27	2	0	0	0	0.25346	1	11734	11734		7.1017	3.1573	1	234240			21102	1287	13942	14088	28696	28696					0.10062602511425212
TSKKKLKK	8	Unmodified	_TSKKKLKK_					0	0	0			REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.8323669433594	2	480.831852	959.649151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.36	1	117.36	116.86	117.86	0								0	0	0	0.38822	1	29782	29782		0	0	1		+		21103	13149	13943	14089	28697	28697					0.16771202990605616
TSLADDNLK	9	Unmodified	_TSLADDNLK_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENST00000487754.2_1_6:56350034-56354383:-|nuORF	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7508850097656	2	488.750921	975.48729	-0.08678	-4.2414E-05	-1.0003	-0.0004889	-1.0871	-0.00053132	488.7502391369653	33.847	0.25499	33.921	33.806	34.061	0.074322					20	11	3	0	0	0	0.30757	1	5341	5341		5.7319	0	1	27261			21104	3480	13944	14090	28698	28698					-0.0014343055300969354
TSLIRRGQ	8	Unmodified	_TSLIRRGQ_					0	0	0			REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|52|1|anti-sense	REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|52|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.77752685546875	2	465.777608	929.540663	0.22737	0.0001059	-0.30741	-0.00014318	-0.080036	-3.7279E-05	465.7773929697119	77.292	1.9772	77.327	77.017	78.994	0.034485					128	74	3	0	0	0	0.53858	2	18386	18386;18501		2.3027	0	1	829610	+		21105	13018	13945	14091	28699;28700	28699					0.07307411740180214
TSNDHLSCL	9	Unmodified	_TSNDHLSCL_					0	0	0			REV__ENST00000359015.4_1_6:137019770-137026263:-|nuORF	REV__ENST00000359015.4_1_6:137019770-137026263:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2300109863281	2	495.221474	988.428395	0.0052408	2.5954E-06	-0.58769	-0.00029104	-0.58245	-0.00028844	495.2210596047104	27.847	0.72089	27.847	27.603	28.324	0					64	42	2	0	0	0	0.32112	1	3788	3788		3.9444	0	1	21794	+		21106	11524	13946	14092	28701	28701					-0.06628230118985812
TSPDEQITDM	10	Unmodified	_TSPDEQITDM_					0	0	0			REV__ENSG00000151694|ENST00000310823|ADAM17	REV__ENSG00000151694|ENST00000310823|ADAM17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2736206054688	2	568.742436	1135.47032	-0.17408	-9.9008E-05	-4.401	-0.002503	-4.575	-0.002602	568.7402914409395	43.827	0.37084	43.827	43.663	44.034	0					20	12	2	0	0	0	0.31803	1	8428	8428		3.2813	1.2216	1	33247	+		21107	9653	13947	14093	28702	28702					-0.09199719221123814
TSPDEQITDM	10	Unmodified	_TSPDEQITDM_					0	0	0			REV__ENSG00000151694|ENST00000310823|ADAM17	REV__ENSG00000151694|ENST00000310823|ADAM17	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.742436	1135.47032	-0.042415	-2.4123E-05	-4.8642	-0.0027665	-4.9066	-0.0027906	568.7400348322374	43.75	0.18309	43.838	43.767	43.95	0.088924	0.0055776	-0.00023729	NaN	3.2813	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39944	+		21108	9653	13947	14093							-0.09199719221123814
TSPFLEPLMV	10	Unmodified	_TSPFLEPLMV_					0	0	0		DNAH3|p.I323Tfs*15|1|0.08|ENSG00000158486|chr16:21134343-21134373|TAGACACTGTGCCAGGGCACAGGGGCCCGGA/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-2|DNAH3;DNAH3|p.E992Qfs*16|1|0.32|ENSG00000158486|chr16:21075545-21075557|CACCAATGGGCTC/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	DNAH3|p.I323Tfs*15|1|0.08|ENSG00000158486|chr16:21134343-21134373|TAGACACTGTGCCAGGGCACAGGGGCCCGGA/-|frameshift_variant	DNAH3|p.I323Tfs*15|1|0.08|ENSG00000158486|chr16:21134343-21134373|TAGACACTGTGCCAGGGCACAGGGGCCCGGA/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7645263671875	2	567.299193	1132.58383	0.62386	0.00035391	3.0401	0.0017246	3.664	0.0020786	567.3009581413617	85.345	0.45631	85.368	84.983	85.439	0.023125					29	18	2	0	0	0	0.28366	1	20889	20889		26.884	7.6267	1	158890			21109	285	13948	14094	28703	28703					0.022844206825766378
TSPLDQQR	8	Unmodified	_TSPLDQQR_					0	0	0			REV__ENST00000359308.8_1_22:42017799-42017931:+|nuORF	REV__ENST00000359308.8_1_22:42017799-42017931:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.74310302734375	2	472.743431	943.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.573	1	27.573	27.073	28.073	0								0	0	0	0.38822	1	3586	3586		4.3292	0	1		+		21110	11527	13949	14095	28704	28704					-0.001688776303353734
TSPSPWTSL	9	Unmodified	_TSPSPWTSL_					0	0	0			REV__ENST00000409245.5_1_2:47256450-47273455:+|nuORF	REV__ENST00000409245.5_1_2:47256450-47273455:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2417297363281	2	488.242732	974.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.133	1	33.133	32.633	33.633	0								0	0	0	0.2428	1	5228	5228		10.824	0	1		+		21111	11772	13950	14096	28705	28705					-0.01734511719087095
TSPSPWTSL	9	Unmodified	_TSPSPWTSL_					0	0	0			REV__ENST00000409245.5_1_2:47256450-47273455:+|nuORF	REV__ENST00000409245.5_1_2:47256450-47273455:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2411193847656	2	488.242732	974.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.12	1	33.194	32.694	33.694	0.074322								0	0	0	0.2428	1	5104	5104		10.824	0	1		+		21112	11772	13950	14096	28706	28706					-0.01734511719087095
TSPVALQRA	9	Unmodified	_TSPVALQRA_					0	0	0		nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.25836181640625	2	471.771991	941.529429	-0.25426	-0.00011995	0.20986	9.9005E-05	-0.044403	-2.0948E-05	471.77199406416076	33.434	0.43956	33.434	33.248	33.688	0					38	15	3	0	0	0	0.32112	1	5369	5369		3.9444	1.6417	1	102600			21113	2209	13951	14097	28707	28707					0.056325896460293734
TSQFVLSNH	9	Unmodified	_TSQFVLSNH_					0	0	0			REV__ENST00000437099.6_1_17:9818975-9819089:-|nuORF	REV__ENST00000437099.6_1_17:9818975-9819089:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.769775390625	2	516.759081	1031.50361	-0.058073	-3.001E-05	0.11862	6.1297E-05	0.060545	3.1287E-05	516.7591840447681	30.624	0.28199	30.7	30.563	30.845	0.075403					30	18	2	0	0	0	0.32614	1	4376	4376		3.2813	0.39209	1	24652	+		21114	11869	13952	14098	28708	28708					-0.01088304596260059
TSRDVKRL	8	Unmodified	_TSRDVKRL_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7905578613281	2	487.790715	973.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.829	1	77.863	77.363	78.363	0.034485								0	0	0	0.38822	1	18643	18643		1.8442	0	1				21115	2286	13953	14099	28709	28709					0.0790368091164737
TSRRKWEQRKS	11	Unmodified	_TSRRKWEQRKS_					0	0	0			REV__PHF21B|p.R303W|1|0.33|ENSG00000056487|chr22:44893510-44893510|G/A|missense_variant	REV__PHF21B|p.R303W|1|0.33|ENSG00000056487|chr22:44893510-44893510|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2265319824219	3	487.939291	1460.79604	0.038263	1.867E-05	-1.5512	-0.00075689	-1.5129	-0.00073822	487.9388160720615	36.267	0.61415	36.267	36.022	36.636	0					42	23	3	0	0	0	0.31098	1	6173	6173		1.1098	0	1	50688	+		21116	12956	13954	14100	28710	28710					0.08407648137563228
TSSAQIIQR	9	Unmodified	_TSSAQIIQR_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2801208496094	2	502.28018	1002.54581	-0.17272	-8.6752E-05	-0.19229	-9.6582E-05	-0.365	-0.00018333	502.2799776782019	28.443	0.56848	28.443	28.271	28.84	0					69	29	3	0	0	0	0.0034419	1	3845	3845		106.94	7.1849	1	219530			21117	835	13955	14101	28711	28711					0.04463670812151577
TSSAQIIQR	9	Unmodified	_TSSAQIIQR_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2802429199219	2	502.28018	1002.54581	-0.13461	-6.7614E-05	0.0066798	3.3551E-06	-0.12793	-6.4259E-05	502.2801088723484	28.342	0.57729	28.424	28.256	28.833	0.082134					77	32	3	0	0	0	0.0097877	1	3680	3680		67.838	6.2363	1	217360			21118	835	13955	14101	28712	28712					0.04463670812151577
TSSAVTSVAK	10	Unmodified	_TSSAVTSVAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.7610778808594	2	475.761289	949.508025	-0.50193	-0.0002388	-0.053717	-2.5557E-05	-0.55565	-0.00026436	475.76126521487464	23.368	1.0303	23.368	23.165	24.196	0					228	96	4	0	0	0	0.00091915	4	2389	2356;2389;2424;2457		91.085	45.385	1	674590			21119	4118	13956	14102	28713;28714;28715;28716	28714					0.03125159826674917
TSSAVTSVAK	10	Unmodified	_TSSAVTSVAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.7610778808594	2	475.761289	949.508025	-0.2665	-0.00012679	-0.12611	-5.9998E-05	-0.39261	-0.00018679	475.7612280247036	23.18	0.80245	23.282	23.065	23.867	0.10178					213	77	4	0	0	0	0.043719	4	2213	2182;2213;2246;2277		59.368	13.669	1	618610			21120	4118	13956	14102	28717;28718;28719;28720	28718					0.03125159826674917
TSSEHDQVTL	10	Unmodified	_TSSEHDQVTL_					0	0	0			REV__nc|ENSG00000177873|Q8N2I2-2|ZNF619	REV__nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.762939453125	2	558.762017	1115.50948	0.8192	0.00045774	1.2936	0.00072283	2.1128	0.0011806	558.7625203361239	65.928	1.3416	65.928	65.645	66.987	0					129	49	4	0	0	0	0.17573	1	15220	15220		36.506	2.1045	1	4348300	+		21121	10436	13957	14103	28721	28721					-0.04365250875230231
TSSFWRHH	8	Unmodified	_TSSFWRHH_					0	0	0		ENST00000422744.2_1_10:96902449-96904134:-|nuORF	ENST00000422744.2_1_10:96902449-96904134:-|nuORF	ENST00000422744.2_1_10:96902449-96904134:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2501220703125	2	529.251757	1056.48896	0.49548	0.00026223	-3.6588	-0.0019364	-3.1634	-0.0016742	529.2495925108836	63.603	0.84492	63.603	63.261	64.106	0					48	29	2	0	0	0	0.53423	1	14450	14450		5.2307	1.2863	1	165520			21122	6457	13958	14104	28722	28722					-0.037023319537411226
TSSGNPIFR	9	Unmodified	_TSSGNPIFR_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7540283203125	2	489.753798	977.493044	0.09838	4.8182E-05	0.23868	0.00011689	0.33706	0.00016508	489.7537701761066	36.088	0.53625	36.088	35.892	36.429	0					39	20	3	0	0	0	0.2125	1	6110	6110		17.113	2.2746	1	82670			21123	2261	13959	14105	28723	28723					0.0033971274932582674
TSSGNPIFR	9	Unmodified	_TSSGNPIFR_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.75408935546875	2	489.753798	977.493044	0.10888	5.3326E-05	0.28667	0.0001404	0.39555	0.00019372	489.7537680246847	36.026	0.63488	36.107	35.82	36.455	0.081715					38	24	2	0	0	0	0.2125	1	5957	5957		17.113	5.4726	1	73099			21124	2261	13959	14105	28724	28724					0.0033971274932582674
TSSPPDKVL	9	Unmodified	_TSSPPDKVL_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.25836181640625	2	472.258382	942.502212	-0.25013	-0.00011813	0.28102	0.00013271	0.030886	1.4586E-05	472.2584432426847	33.705	0.71652	33.705	33.464	34.181	0					57	25	4	0	0	0	0.26104	1	5414	5414		11.495	2.1116	1	176440			21125	3969	13960	14106	28725	28725					0.028660613149895653
TSSPPDKVL	9	Unmodified	_TSSPPDKVL_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.25830078125	2	472.258382	942.502212	-0.2647	-0.00012501	0.19088	9.0144E-05	-0.073818	-3.4861E-05	472.25846361825853	33.628	0.70039	33.702	33.447	34.148	0.074322					60	28	3	0	0	0	0.25162	1	5227	5227		8.1555	1.8014	1	140600			21126	3969	13960	14106	28726	28726					0.028660613149895653
TSSPPDKVL	9	Unmodified	_TSSPPDKVL_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	472.258382	942.502212	-0.25013	-0.00011813	0.28102	0.00013271	0.030886	1.4586E-05	472.2584432426847	33.705	0.71652	33.705	33.464	34.181	0	0.0014508	3.5852E-05	NaN	11.495	57	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176440			21127	3969	13960	14106							0.028660613149895653
TSSSQELPVF	10	Unmodified	_TSSSQELPVF_					0	0	0		ENST00000532769.1_1_11:13716334-13716379:+|nuORF	ENST00000532769.1_1_11:13716334-13716379:+|nuORF	ENST00000532769.1_1_11:13716334-13716379:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.78369140625	2	547.771854	1093.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.457	1	93.494	92.994	93.994	0.037369								0	0	0	0.33443	1	23396	23396		6.7232	0.51738	1				21128	7035	13961	14107	28727	28727					-0.01386874864465426
TSSSSFLR	8	Unmodified	_TSSSSFLR_					0	0	0			REV__ENST00000371175.8_1_6:49587051-49604449:-|nuORF	REV__ENST00000371175.8_1_6:49587051-49604449:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.8560791015625	2	442.727249	883.439946	0.0058865	2.6061E-06	0.79338	0.00035125	0.79927	0.00035386	442.7275793270195	29.674	0.31124	29.674	29.488	29.799	0					27	15	3	0	0	0	0.3576	1	4182	4182		7.9102	0	1	29853	+		21129	11598	13962	14108	28728	28728					-0.006436650333171201
TSTAKPQSTTS	11	Unmodified	_TSTAKPQSTTS_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7784423828125	2	554.777667	1107.54078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.727	1	18.817	18.317	19.317	0.089705								0	0	0	0.33908	1	1111	1111		1.0715	0.27783	1				21130	3395	13963	14109	28729	28729					-0.008686778411401974
TSTESISTR	9	Unmodified	_TSTESISTR_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2457275390625	2	491.246003	980.477453	-0.28254	-0.0001388	-0.28489	-0.00013995	-0.56744	-0.00027875	491.2457672499359	21.901	0.3454	21.901	21.732	22.078	0					53	32	2	0	0	0	0.30757	1	1983	1983		5.7319	2.4505	1	39346			21131	2377	13964	14110	28730	28730					-0.013566185583840706
TSTESISTR	9	Unmodified	_TSTESISTR_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	491.246003	980.477453	0.036677	1.8018E-05	-0.2108	-0.00010356	-0.17412	-8.5538E-05	491.2457608162743	21.724	0.36737	21.826	21.684	22.051	0.10178	-0.037412	3.3397E-05	NaN	5.7319	65	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36928			21132	2377	13964	14110							-0.013566185583840706
TSTISEVKA	9	Unmodified	_TSTISEVKA_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.25579833984375	2	468.25584	934.497126	0.14995	7.0214E-05	-0.83559	-0.00039127	-0.68564	-0.00032105	468.2554183427894	76.478	0.7666	76.517	76.356	77.123	0.03923					39	27	2	0	0	0	0.33704	1	18319	18319		1.8442	0	1	215980			21133	2599	13965	14111	28731	28731					0.027257574523787298
TSTTSSSF	8	Unmodified	_TSTTSSSF_					0	0	0			REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.85614013671875	2	409.18234	816.350128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.2	1	66.267	65.767	66.767	0.066872								0	0	0	0.38822	1	15105	15105		2.5775	1.7838	1		+		21134	8122	13966	14112	28732	28732					-0.06539339432561064
TSVNTIRS	8	Unmodified	_TSVNTIRS_					0	0	0			REV__ENSG00000196859|ENST00000355612|KRT39	REV__ENSG00000196859|ENST00000355612|KRT39	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2403259277344	2	439.240524	876.466495	-0.18517	-8.1332E-05	0.21039	9.2414E-05	0.025228	1.1081E-05	439.2404770171392	25.481	0.40823	25.577	25.431	25.839	0.096075					71	33	3	0	0	0	0.51967	1	2839	2839		10.074	0	1	97053	+	+	21135	7851	13967	14113	28733	28733					0.02332023858014054
TSVSFSFLCVI	11	Unmodified	_TSVSFSFLCVI_					0	0	0		nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7957763671875	2	601.809925	1201.6053	0.63663	0.00038313	-1.5418	-0.00092784	-0.90513	-0.00054471	601.8075265625049	92.081	0.42258	92.081	91.897	92.32	0					49	15	5	0	0	0	0.29897	1	23162	23162		18.146	1.9972	1	215700			21136	7616	13968	14114	28734	28734					0.012558057113210452
TSVSFSFLCVI	11	Unmodified	_TSVSFSFLCVI_					0	0	0		nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8075561523438	2	601.809925	1201.6053	0.55376	0.00033326	-2.9545	-0.0017781	-2.4008	-0.0014448	601.8075104101686	92.083	0.57047	92.12	91.859	92.429	0.03653					34	19	3	0	0	0	0.34344	2	22990	22990;23014		13.042	0.80181	1	227750			21137	7616	13968	14114	28735;28736	28735					0.012558057113210452
TSWLTGIITAT	11	Unmodified	_TSWLTGIITAT_					0	0	0		ENSG00000175398|ENST00000309675|OR10P1	ENSG00000175398|ENST00000309675|OR10P1	ENSG00000175398|ENST00000309675|OR10P1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.31982421875	2	582.318971	1162.62339	0.76228	0.00044389	0.15704	9.1448E-05	0.91932	0.00053534	582.3189774089383	65.198	0.60529	65.198	64.973	65.578	0					45	21	3	0	0	0	0.32422	1	14975	14975		15.248	2.7169	1	313090			21138	4625	13969	14115	28737	28737					0.04858263957657982
TSYILLPLE	9	Unmodified	_TSYILLPLE_					0	0	0		nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21	nc|ENSG00000172995|Q9UBL0-4|ARPP21	nc|ENSG00000172995|Q9UBL0-4|ARPP21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7998046875	2	524.799883	1047.58521	0.36361	0.00019082	0.044985	2.3608E-05	0.40859	0.00021443	524.7998201163507	85.707	1.0471	85.707	85.482	86.529	0					124	43	4	0	0	0	0.22344	1	21416	21416		15.847	0	1	1667600			21139	4522	13970	14116	28738	28738					0.06332378043020981
TTADPAIAASD	11	Unmodified	_TTADPAIAASD_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7608642578125	2	516.745836	1031.47712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.682	1	30.682	30.182	31.182	0								0	0	0	0.33436	1	4499	4499		2.7352	0.15772	1				21140	2507	13971	14117	28739	28739					-0.03736038278248088
TTAENEFVM	9	Oxidation (M)	_TTAENEFVM(Oxidation (M))_		TTAENEFVM(1)		TTAENEFVM(89)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.22900390625	2	529.228965	1056.44338	-0.14122	-7.4737E-05	0.14225	7.5281E-05	0.0010271	5.436E-07	529.229026295161	44.137	0.69485	44.137	43.887	44.582	0					55	23	3	0	0	0	0.0045534	2	8574	8519;8574		88.954	31.483	1	310410		+	21141	219	13972	14118	28740;28741	28741		8			-0.08258783041628703
TTAENEFVM	9	Oxidation (M)	_TTAENEFVM(Oxidation (M))_		TTAENEFVM(1)		TTAENEFVM(79)	0	0	1		KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q5XQN5;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2291259765625	2	529.228965	1056.44338	0.020673	1.0941E-05	0.24939	0.00013199	0.27007	0.00014293	529.229073396183	44.03	0.72396	44.119	43.873	44.597	0.088924					51	24	3	0	0	0	0.006264	2	8377	8377;8426		78.728	17.458	1	260500		+	21142	219	13972	14118	28742;28743	28742		8			-0.08258783041628703
TTAGGVPVTR	10	Unmodified	_TTAGGVPVTR_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7696838378906	2	479.769448	957.524344	-0.41368	-0.00019847	0.81152	0.00038934	0.39784	0.00019087	479.76973685545687	27.543	0.55584	27.543	27.453	28.009	0					93	44	3	0	0	0	0.33001	1	3565	3565		19.362	6.3195	1	324070			21143	1833	13973	14119	28744	28744					0.043882857834205424
TTAGGVPVTR	10	Unmodified	_TTAGGVPVTR_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	479.769448	957.524344	-0.3893	-0.00018677	0.88939	0.0004267	0.5001	0.00023993	479.7698194433286	27.466	0.59078	27.552	27.432	28.023	0.0867	0.0047156	2.6372E-05	NaN	19.362	91	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308640			21144	1833	13973	14119							0.043882857834205424
TTARRLSIT	9	Unmodified	_TTARRLSIT_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8036804199219	2	509.803823	1017.59309	0.32258	0.00016445	-0.085763	-4.3722E-05	0.23681	0.00012073	509.8036639285341	78.736	1.8984	78.736	78.153	80.051	0					143	65	3	0	0	0	0.29576	2	19290	19290;19338		7.2892	0.56607	1	544660			21145	4395	13974	14120	28745;28746	28745					0.08499950083125896
TTASVVIIR	9	Unmodified	_TTASVVIIR_					0	0	0		nc|ENSG00000170836|O15297-2|PPM1D;PPM1D|p.P437Tfs*6|1|0.53|ENSG00000170836|chr17:60663040-60663041|-/T|frameshift_variant;PPM1D|p.T517Lfs*5|1|0.3|ENSG00000170836|chr17:60663282-60663282|A/-|frameshift_variant;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.2974853515625	2	480.297842	958.581131	-0.40203	-0.00019309	-0.020766	-9.974E-06	-0.4228	-0.00020307	480.2976834768164	43.303	0.57501	43.303	43.063	43.638	0					41	20	3	0	0	0	0.0050339	2	8263	8263;8317		82.529	44.555	1	153350			21146	4412	13975	14121	28747;28748	28747					0.10018333339951369
TTASVVIIR	9	Unmodified	_TTASVVIIR_					0	0	0		nc|ENSG00000170836|O15297-2|PPM1D;PPM1D|p.P437Tfs*6|1|0.53|ENSG00000170836|chr17:60663040-60663041|-/T|frameshift_variant;PPM1D|p.T517Lfs*5|1|0.3|ENSG00000170836|chr17:60663282-60663282|A/-|frameshift_variant;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.297607421875	2	480.297842	958.581131	-0.32599	-0.00015657	0.1979	9.5051E-05	-0.12808	-6.1519E-05	480.29775936013107	43.23	0.59574	43.319	43.064	43.659	0.089767					37	21	3	0	0	0	0.03918	2	8165	8109;8165		45.7	25.246	1	125430			21147	4412	13975	14121	28749;28750	28750					0.10018333339951369
TTAVSNLVSR	10	Unmodified	_TTAVSNLVSR_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2931518554688	2	524.293288	1046.57202	0.29493	0.00015463	-0.53958	-0.0002829	-0.24466	-0.00012827	524.2929278346213	37.924	0.69692	37.924	37.758	38.455	0					45	23	3	0	0	0	0.051941	1	6675	6675		57.108	38.734	1	134660			21148	6096	13976	14122	28751	28751					0.050599399836073644
TTAVSNLVSR	10	Unmodified	_TTAVSNLVSR_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.293212890625	2	524.293288	1046.57202	0.22029	0.0001155	-0.27127	-0.00014222	-0.050978	-2.6728E-05	524.2930587782131	37.825	0.52231	37.909	37.684	38.207	0.084476					39	18	3	0	0	0	0.14608	1	6517	6517		39.923	20.666	1	109440			21149	6096	13976	14122	28752	28752					0.050599399836073644
TTEEIDATL	9	Unmodified	_TTEEIDATL_					0	0	0			REV__tr|U7SQU0|U7SQU0_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01687PE=4SV=1	REV__tr|U7SQU0|U7SQU0_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01687PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.218994140625	2	496.742762	991.470971	0.087718	4.3573E-05	0.37811	0.00018782	0.46583	0.0002314	496.7428860335825	23.694	0.25318	23.793	23.659	23.912	0.099739					27	22	2	0	0	0	0.33704	1	2362	2362		1.8442	0	1	14629	+		21150	13130	13977	14123	28753	28753					-0.025105565097419458
TTEGSKFVRG	10	Unmodified	_TTEGSKFVRG_					0	0	0			REV__nc|ENSG00000159459|Q8IWV7-2|UBR1	REV__nc|ENSG00000159459|Q8IWV7-2|UBR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7871704101562	2	541.285463	1080.55637	-0.29214	-0.00015813	0.26921	0.00014572	-0.022933	-1.2413E-05	541.2855243325398	19.472	0.45004	19.472	19.314	19.764	0					108	51	3	0	0	0	0.46899	1	1351	1351		1.1933	0	1	56667	+		21151	9829	13978	14124	28754	28754					0.019316534665676954
TTEKRLYHI	9	Unmodified	_TTEKRLYHI_					0	0	0			REV__ENST00000552319.5_1_12:70672016-70688026:+|nuORF	REV__ENST00000552319.5_1_12:70672016-70688026:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.8143310546875	2	580.824755	1159.63496	0.30514	0.00017723	0.31426	0.00018253	0.6194	0.00035976	580.8249786611979	49.754	0.46196	49.754	49.534	49.996	0					31	15	3	0	0	0	0.29576	1	10305	10305		7.2892	1.5574	1	111300	+		21152	12434	13979	14125	28755	28755					0.06152505771660799
TTEKRLYHI	9	Unmodified	_TTEKRLYHI_					0	0	0			REV__ENST00000552319.5_1_12:70672016-70688026:+|nuORF	REV__ENST00000552319.5_1_12:70672016-70688026:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	580.824755	1159.63496	0.30514	0.00017723	0.31426	0.00018253	0.6194	0.00035976	580.8249786611979	49.754	0.46196	49.754	49.534	49.996	0	0.0076579	4.2971E-05	NaN	7.2892	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111300	+		21153	12434	13979	14125							0.06152505771660799
TTEKRLYHI	9	Unmodified	_TTEKRLYHI_					0	0	0			REV__ENST00000552319.5_1_12:70672016-70688026:+|nuORF	REV__ENST00000552319.5_1_12:70672016-70688026:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	580.824755	1159.63496	0.37621	0.00021851	0.063506	3.6886E-05	0.43972	0.0002554	580.8245069702792	49.662	0.30882	49.739	49.536	49.845	0.076607	-0.0076579	-0.00024832	NaN	7.2892	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82964	+		21154	12434	13979	14125							0.06152505771660799
TTGESVITR	9	Unmodified	_TTGESVITR_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;KPNA6|p.S74C|1|0.07|ENSG00000025800|chr1:32156935-32156935|C/G|missense_variant	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2588806152344	2	482.258914	962.503274	-0.41366	-0.00019949	0.59147	0.00028524	0.17782	8.5753E-05	482.25911690180504	27.711	0.38017	27.711	27.603	27.983	0					59	25	3	0	0	0	0.22861	2	3613	3606;3613		15.248	6.5031	1	59900			21155	493	13980	14126	28756;28757	28757					0.020522756839000067
TTGESVITR	9	Unmodified	_TTGESVITR_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;KPNA6|p.S74C|1|0.07|ENSG00000025800|chr1:32156935-32156935|C/G|missense_variant	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.25897216796875	2	482.258914	962.503274	-0.38616	-0.00018623	0.52496	0.00025317	0.1388	6.6939E-05	482.2590727126996	27.575	0.42858	27.661	27.56	27.989	0.0867					49	29	3	0	0	0	0.28472	2	3457	3457;3472		8.7454	0.96765	1	49168			21156	493	13980	14126	28758;28759	28758					0.020522756839000067
TTGLMGDIFS	10	Unmodified	_TTGLMGDIFS_					0	0	0		ENST00000500268.6_1_4:10455287-10455473:-|nuORF	ENST00000500268.6_1_4:10455287-10455473:-|nuORF	ENST00000500268.6_1_4:10455287-10455473:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7742309570312	2	521.2497	1040.48485	0.0076386	3.9816E-06	0.02083	1.0858E-05	0.028469	1.4839E-05	521.2496099289409	34.058	0.3914	34.058	33.883	34.274	0					20	14	2	0	0	0	0.31794	1	5519	5519		3.5965	0	1	21615			21157	6859	13981	14127	28760	28760					-0.033776022823076346
TTGMLILYIFL	11	Unmodified	_TTGMLILYIFL_					0	0	0		ENST00000415215.1_1_X:73167175-73167235:+|nuORF	ENST00000415215.1_1_X:73167175-73167235:+|nuORF	ENST00000415215.1_1_X:73167175-73167235:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.869140625	2	642.867243	1283.71993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.861	1	69.861	69.361	70.361	0								0	0	0	0.32586	1	16363	16363		5.7319	0.83484	1				21158	6414	13982	14128	28761	28761					0.0894211519325836
TTGMLILYIFL	11	Unmodified	_TTGMLILYIFL_					0	0	0		ENST00000415215.1_1_X:73167175-73167235:+|nuORF	ENST00000415215.1_1_X:73167175-73167235:+|nuORF	ENST00000415215.1_1_X:73167175-73167235:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.86865234375	2	642.867243	1283.71993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.943	1	69.943	69.443	70.443	0								0	0	0	0.3155	1	16388	16388		9.3831	1.2276	1				21159	6414	13982	14128	28762	28762					0.0894211519325836
TTGMLILYIFL	11	Unmodified	_TTGMLILYIFL_					0	0	0		ENST00000415215.1_1_X:73167175-73167235:+|nuORF	ENST00000415215.1_1_X:73167175-73167235:+|nuORF	ENST00000415215.1_1_X:73167175-73167235:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.269775390625	2	642.867243	1283.71993	0.2687	0.00017274	3.6551	0.0023497	3.9238	0.0025225	642.8692684638218	69.832	0.26279	69.892	69.751	70.013	0.060562					12	9	2	0	0	0	0.39378	1	16193	16193		5.7319	0.83484	1	97526			21160	6414	13982	14128	28763	28763					0.0894211519325836
TTHILKEVLR	10	Unmodified	_TTHILKEVLR_					0	0	0		nc|ENSG00000175600|Q9HAC7-2|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT;ENST00000460466.1_1_7:40847931-40900075:+|nuORF;nc|ENSG00000175600|Q9HAC7-4|SUGCT;ENSG00000175600|ENST00000335693|SUGCT	nc|ENSG00000175600|Q9HAC7-2|SUGCT	nc|ENSG00000175600|Q9HAC7-2|SUGCT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5623474121094	3	403.915312	1208.72411	0.38851	0.00015692	-0.33036	-0.00013344	0.058148	2.3487E-05	403.91513507131293	36.225	0.83211	36.225	35.944	36.776	0					53	31	2	0	0	0	0.31845	1	6158	6158		1.4551	0.24029	1	32216			21161	7562	13983	14129	28764	28764					0.12809340731178054
TTHQRIHT	8	Unmodified	_TTHQRIHT_					0	0	0		nc|ENSG00000184517|Q6P2D0-2|ZFP1;ENST00000568079.5_1_16:75182493-75204229:+|nuORF;ENSG00000184517|ENST00000570010|ZFP1	nc|ENSG00000184517|Q6P2D0-2|ZFP1	nc|ENSG00000184517|Q6P2D0-2|ZFP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2649841308594	2	497.264865	992.515176	-0.005462	-2.7161E-06	-0.72019	-0.00035812	-0.72565	-0.00036084	497.26464398996364	32.592	0.37642	32.592	32.425	32.801	0					32	19	2	0	0	0	0.53858	1	5080	5080		2.3027	0	1	26795			21162	4982	13984	14130	28765	28765					0.018619372177454352
TTIKRIIKK	9	Unmodified	_TTIKRIIKK_					0	0	0		ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE;nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	ENST00000578839.5_1_17:61562212-61574724:+|nuORF	ENST00000578839.5_1_17:61562212-61574724:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8790893554688	2	550.879333	1099.74411	0.038711	2.1325E-05	0.1888	0.00010401	0.22751	0.00012533	550.8792598693951	111.96	1.095	111.96	111.82	112.92	0					253	122	3	0	0	0	0.35102	3	28729	28729;28805;28925		0	0	1	5636700			21163	3736	13985	14131	28766;28767;28768	28766					0.19823136461809554
TTIKRIIKK	9	Unmodified	_TTIKRIIKK_					0	0	0		ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE;nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	ENST00000578839.5_1_17:61562212-61574724:+|nuORF	ENST00000578839.5_1_17:61562212-61574724:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8790283203125	2	550.879333	1099.74411	0.40774	0.00022461	0.33824	0.00018633	0.74597	0.00041094	550.8792942466314	112.44	0.26534	112.45	112.4	112.67	0.014595					37	28	2	0	0	0	0.35102	1	28696	28696		0	0	1	808070			21164	3736	13985	14131	28769	28769					0.19823136461809554
TTIMGVMEPP	10	Unmodified	_TTIMGVMEPP_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2484130859375	2	538.261753	1074.50895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.447	1	33.522	33.022	34.022	0.074322								0	0	0	0.33892	1	5201	5201		1.4819	0	1		+		21165	10812	13986	14132	28770	28770					-0.025320851202877748
TTKEIRGII	9	Unmodified	_TTKEIRGII_					0	0	0			REV__tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1	REV__tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.819091796875	2	515.816399	1029.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.187	1	68.251	67.751	68.751	0.063507								0	0	0	0.24978	1	15701	15701		9.3831	0.78985	1		+		21166	13174	13987	14133	28771	28771					0.10462004885721399
TTKKKKKKK	9	Unmodified	_TTKKKKKKK_					0	0	0		chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1	chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1	chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3925170898438	2	559.392608	1116.77066	0.035898	2.0081E-05	0.36392	0.00020358	0.39982	0.00022366	559.3926668477778	111.94	1.0076	111.94	111.81	112.82	0					271	110	3	0	0	0	0.34704	7	28717	28645;28680;28717;28754;28791;28833;28873		0.52476	0.52476	1	5251100			21167	192	13988	14134	28772;28773;28774;28775;28776;28777;28778	28774					0.21694825353119995
TTKKKKKKK	9	Unmodified	_TTKKKKKKK_					0	0	0		chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1	chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1	chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.392822265625	2	559.392608	1116.77066	0.43253	0.00024195	-0.055403	-3.0992E-05	0.37712	0.00021096	559.3924798421609	112.02	0.98402	112.04	111.81	112.8	0.014595					272	115	3	0	0	0	0.35102	7	28508	28508;28542;28580;28651;28691;28770;28774		0	0	1	4765000			21168	192	13988	14134	28779;28780;28781;28782;28783;28784;28785	28779					0.21694825353119995
TTLGEVTE	8	Unmodified	_TTLGEVTE_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.2145690917969	2	425.21364	848.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.44	1	105.47	104.97	105.97	0.029739								0	0	0	0.38822	1	26982	26982		2.3027	0	1		+		21169	7943	13989	14135	28786	28786					-0.017541933643542507
TTLKPDKRS	9	Unmodified	_TTLKPDKRS_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|137|3|sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|137|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037719726562	2	523.303655	1044.59276	0.34884	0.00018255	0.015392	8.0547E-06	0.36423	0.0001906	523.3035050306771	79.839	0.75821	79.866	79.464	80.222	0.026436					60	26	3	0	0	0	0.30397	1	19276	19276		6.2058	6.2058	1	275610	+		21170	12704	13990	14136	28787	28787					0.07224530363282611
TTLSKGGVL	9	Unmodified	_TTLSKGGVL_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.57025146484375	2	438.263468	874.512382	-0.39263	-0.00017208	0.19327	8.4702E-05	-0.19937	-8.7375E-05	438.2633892294535	41.977	2.3369	42.067	41.667	44.004	0.089764					203	88	3	0	0	0	0.26021	1	8263	8263		0	0	1	387720	+		21171	7908	13991	14137	28788	28788					0.0701066904025538
TTLYIGLFTV	10	Unmodified	_TTLYIGLFTV_					0	0	0			REV__ENSG00000172320|ENST00000641045|OR5A1	REV__ENSG00000172320|ENST00000641045|OR5A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.799560546875	2	564.320983	1126.62741	0.076631	4.3245E-05	-0.098605	-5.5645E-05	-0.021974	-1.2401E-05	564.3209037707784	90.089	0.26772	90.123	90.013	90.28	0.034065					14	11	2	0	0	0	0.31643	1	22380	22380		9.3831	0	1	161130	+		21172	10286	13992	14138	28789	28789					0.06916353451356372
TTNKYIGG	8	Unmodified	_TTNKYIGG_					0	0	0			REV__tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	REV__tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.2235107421875	2	427.224342	852.434132	0.34978	0.00014943	-1.6216	-0.00069281	-1.2719	-0.00054337	427.22354872019287	99.74	0.50067	99.783	99.553	100.05	0.042839					59	33	2	0	0	0	0.53858	1	25292	25292		2.3027	0	1	554190	+		21173	13266	13993	14139	28790	28790					0.0020123645499552367
TTNPEQTLP	9	Unmodified	_TTNPEQTLP_					0	0	0		ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000606261.1_1_7:26224125-26225400:+|nuORF	ENST00000606261.1_1_7:26224125-26225400:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2893371582031	2	500.750921	999.48729	-0.15467	-7.7452E-05	-0.26246	-0.00013143	-0.41714	-0.00020888	500.7508190967046	45.627	0.39407	45.627	45.446	45.84	0					22	13	2	0	0	0	0.18759	1	9044	9044		16.149	3.1066	1	90375			21174	581	13994	14140	28791	28791					-0.012474305529963203
TTPHHHPR	8	Unmodified	_TTPHHHPR_					0	0	0			REV__ENST00000451221.1_1_3:172321509-172321743:-|nuORF	REV__ENST00000451221.1_1_3:172321509-172321743:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2594299316406	2	491.751924	981.489296	-0.18046	-8.8739E-05	-1.4052	-0.000691	-1.5856	-0.00077974	491.7511854592967	25.542	0.25784	25.542	25.417	25.675	0					33	19	2	0	0	0	0.3576	1	3016	3016		4.756	0.42677	1	24582	+		21175	11930	13995	14141	28792	28792					-0.0021891223386774072
TTPMGDVEIRL	11	Unmodified	_TTPMGDVEIRL_					0	0	0		RIMS4|p.G122R|1|0.07|ENSG00000101098|chr20:44757757-44757757|C/G|missense_variant	RIMS4|p.G122R|1|0.07|ENSG00000101098|chr20:44757757-44757757|C/G|missense_variant	RIMS4|p.G122R|1|0.07|ENSG00000101098|chr20:44757757-44757757|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.6986389160156	3	411.216551	1230.62782	0.025405	1.0447E-05	-2.2077	-0.00090783	-2.1823	-0.00089738	411.2156817874875	39.114	0.37179	39.201	39.04	39.412	0.086884					22	14	2	0	0	0	0.31101	1	6952	6952		0.45452	0	1	21344			21176	13347	13996	14142	28793	28793					0.021734051089197237
TTPMGDVEIRL	11	Unmodified	_TTPMGDVEIRL_					0	0	0		RIMS4|p.G122R|1|0.07|ENSG00000101098|chr20:44757757-44757757|C/G|missense_variant	RIMS4|p.G122R|1|0.07|ENSG00000101098|chr20:44757757-44757757|C/G|missense_variant	RIMS4|p.G122R|1|0.07|ENSG00000101098|chr20:44757757-44757757|C/G|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	411.216551	1230.62782	0.31579	0.00012986	-1.9944	-0.00082012	-1.6786	-0.00069026	411.2153647279858	39.168	0.34373	39.168	39.004	39.347	0	-0.016237	0.00018422	NaN	0.45452	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31827			21177	13347	13996	14142							0.021734051089197237
TTQEVLQF	8	Unmodified	_TTQEVLQF_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7711486816406	2	483.250557	964.486562	0.10107	4.884E-05	0.10364	5.0085E-05	0.20471	9.8925E-05	483.25045887243283	62.317	0.21829	62.317	62.255	62.473	0					12	7	3	0	0	0	0.35759	1	14104	14104		9.3474	0	1	57832	+		21178	10756	13997	14143	28794	28794					0.0028977479796594707
TTQGLDGLSER	11	Unmodified	_TTQGLDGLSER_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7969360351562	2	588.796392	1175.57823	0.40496	0.00023844	-3.7977	-0.0022361	-3.3928	-0.0019976	588.7961502898796	37.475	0.42467	37.475	37.25	37.675	0					47	14	5	0	0	0	0.36212	1	6509	6509		10.899	5.1671	1	94782			21179	3421	13998	14144	28795	28795					-0.0025358657551350916
TTQGLDGLSER	11	Unmodified	_TTQGLDGLSER_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7970581054688	2	588.796392	1175.57823	0.52343	0.0003082	0.97433	0.00057368	1.4978	0.00088188	588.7960273241005	37.344	0.50266	37.429	37.241	37.744	0.084476					25	17	2	0	0	0	0.35673	1	6354	6354		11.518	5.786	1	47500			21180	3421	13998	14144	28796	28796					-0.0025358657551350916
TTRSKLGDLV	10	Unmodified	_TTRSKLGDLV_					0	0	0			REV__ENST00000378052.5_1_7:148994191-148994263:+|nuORF	REV__ENST00000378052.5_1_7:148994191-148994263:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3172607421875	2	545.316763	1088.61897	0.31087	0.00016952	0.51376	0.00028016	0.82464	0.00044969	545.3168964779684	82.71	2.5599	82.732	81.329	83.889	0.021744					243	91	4	0	0	0	0.42901	1	20088	20088		8.7454	0	1	1612300	+		21181	11656	13999	14145	28797	28797					0.07820799534761136
TTRSKLGDLV	10	Unmodified	_TTRSKLGDLV_					0	0	0			REV__ENST00000378052.5_1_7:148994191-148994263:+|nuORF	REV__ENST00000378052.5_1_7:148994191-148994263:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	545.316763	1088.61897	0.5046	0.00027517	0.31166	0.00016996	0.81626	0.00044512	545.3167622145293	82.766	2.4956	82.766	81.404	83.9	0	0.017385	-9.4411E-05	NaN	8.7454	228	86	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1312500	+		21182	11656	13999	14145							0.07820799534761136
TTRSKLGDLV	10	Unmodified	_TTRSKLGDLV_					0	0	0			REV__ENST00000378052.5_1_7:148994191-148994263:+|nuORF	REV__ENST00000378052.5_1_7:148994191-148994263:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.316763	1088.61897	0.31087	0.00016952	0.51376	0.00028016	0.82464	0.00044969	545.3168964779684	82.71	2.5599	82.732	81.329	83.889	0.021744	-0.017385	0.00012601	NaN	8.7454	243	91	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1612300	+		21183	11656	13999	14145							0.07820799534761136
TTSELLSSR	9	Unmodified	_TTSELLSSR_					0	0	0		ENSG00000166444|ENST00000313726|DENND2B;ENST00000530559.5_1_11:8728764-8737359:-|nuORF;nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B	ENSG00000166444|ENST00000313726|DENND2B	ENSG00000166444|ENST00000313726|DENND2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2639465332031	2	497.264196	992.513839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.505	1	32.579	32.079	33.079	0.07378								0	0	0	0.28073	1	4921	4921		2.9952	0.69251	1				21184	4157	14000	14146	28798	28798					0.017282583383462224
TTSMHSGS	8	Unmodified	_TTSMHSGS_					0	0	0			REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1700134277344	2	404.16871	806.322867	0.29649	0.00011983	2.2496	0.00090923	2.5461	0.0010291	404.1699349951087	71.939	3.9579	71.939	71.669	75.627	0					297	144	5	0	0	0	0.53817	4	17182	17182;17336;17602;17779		2.5775	0	1	15975000	+		21185	12528	14001	14147	28799;28800;28801;28802	28799					-0.0880414624457444
TTSMHSGS	8	Unmodified	_TTSMHSGS_					0	0	0			REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1698303222656	2	404.16871	806.322867	-0.036481	-1.4745E-05	2.4326	0.00098316	2.3961	0.00096842	404.17009284753357	71.907	3.2036	71.963	71.649	74.853	0.055931					273	116	5	0	0	0	0.53817	5	17162	17162;17216;17316;17364;17606		2.5775	0	1	12715000	+		21186	12528	14001	14147	28803;28804;28805;28806;28807	28803					-0.0880414624457444
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2999572753906	2	481.30005	960.585547	-0.21	-0.00010107	0.36978	0.00017798	0.15978	7.6902E-05	481.3000709973181	45.55	0.46682	45.636	45.447	45.914	0.085621					40	17	3	0	0	0	0.13341	1	8838	8838		26.268	4.7312	1	125750			21187	5371	14002	14148	28808	28808					0.1036779776285357
TTSVLIKLS	9	Unmodified	_TTSVLIKLS_					0	0	0		nc|ENSG00000071991|Q9H159-2|CDH19;ENSG00000071991|ENST00000262150|CDH19	nc|ENSG00000071991|Q9H159-2|CDH19	nc|ENSG00000071991|Q9H159-2|CDH19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2998962402344	2	481.30005	960.585547	-0.41714	-0.00020077	0.1356	6.5264E-05	-0.28154	-0.0001355	481.2999871859257	45.665	0.59332	45.665	45.416	46.009	0					40	20	3	0	0	0	0.17428	1	9004	9004		21.537	0	1	196570			21188	777	14003	14149	28809	28809					0.1036779776285357
TTSYAKRH	8	Unmodified	_TTSYAKRH_					0	0	0			REV__ENST00000591160.1_1_19:5902597-5903854:-|nuORF	REV__ENST00000591160.1_1_19:5902597-5903854:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7159118652344	2	482.253966	962.493378	-0.3691	-0.000178	-0.75926	-0.00036616	-1.1284	-0.00054416	482.2536228542961	32.636	0.33013	32.636	32.526	32.856	0					21	16	2	0	0	0	0.3576	1	5089	5089		5.2307	0.47466	1	22672	+		21189	10360	14004	14150	28810	28810					0.010631324691757982
TTTNLLSVSGF	11	Unmodified	_TTTNLLSVSGF_					0	0	0		ENST00000498129.6_1_1:212502517-212507353:+|nuORF	ENST00000498129.6_1_1:212502517-212507353:+|nuORF	ENST00000498129.6_1_1:212502517-212507353:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.3016357421875	2	570.300778	1138.587	-0.079828	-4.5526E-05	1.781	0.0010157	1.7012	0.00097021	570.3016903069381	25.341	0.4133	25.437	25.294	25.708	0.096073					49	34	2	0	0	0	0.41309	1	2806	2806		1.3295	0.72803	1	21340			21190	6850	14005	14151	28811	28811					0.02325387060977846
TTTNLLSVSGF	11	Unmodified	_TTTNLLSVSGF_					0	0	0		ENST00000498129.6_1_1:212502517-212507353:+|nuORF	ENST00000498129.6_1_1:212502517-212507353:+|nuORF	ENST00000498129.6_1_1:212502517-212507353:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	570.300778	1138.587	-0.23476	-0.00013388	1.7684	0.0010085	1.5337	0.00087465	570.3023375527767	25.511	0.041126	25.511	25.473	25.514	0	0.03669	-1.388E-05	NaN	1.3295	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8669.3			21191	6850	14005	14151							0.02325387060977846
TTVDESQVVTR	11	Unmodified	_TTVDESQVVTR_					0	0	0		ENST00000483667.1_1_3:49147547-49148163:-|nuORF;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	ENST00000483667.1_1_3:49147547-49148163:-|nuORF	ENST00000483667.1_1_3:49147547-49148163:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.265380859375	2	617.817324	1233.62009	-0.54537	-0.00033694	0.7305	0.00045132	0.18513	0.00011437	617.8177425153572	33.412	0.40461	33.412	33.223	33.628	0					30	14	3	0	0	0	0.31079	1	5316	5316		3.5871	1.3043	1	45056			21192	4478	14006	14152	28812	28812					0.012629691129859566
TTVDGWHP	8	Unmodified	_TTVDGWHP_					0	0	0			REV__ENST00000542575.6_2_19:47278374-47278659:-|nuORF	REV__ENST00000542575.6_2_19:47278374-47278659:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.89154052734375	2	456.714142	911.413731	-0.16197	-7.3975E-05	0.31952	0.00014593	0.15755	7.1953E-05	456.71422567087365	31.534	0.37901	31.608	31.475	31.854	0.073782					29	18	2	0	0	0	0.3576	1	4591	4591		0.79363	0	1	25165	+		21193	12407	14007	14153	28813	28813					-0.04551934204812369
TTVEGLITR	9	Unmodified	_TTVEGLITR_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.28472900390625	2	495.284931	988.55531	-0.055304	-2.7391E-05	-0.042111	-2.0857E-05	-0.097415	-4.8248E-05	495.28480139687616	45.493	0.57377	45.493	45.301	45.874	0					50	19	4	0	0	0	0.02143	2	8987	8939;8987		57.249	34.513	1	258260			21194	1643	14008	14154	28814;28815	28815					0.06057439097662609
TTVEGLITR	9	Unmodified	_TTVEGLITR_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2850646972656	2	495.284931	988.55531	0.16623	8.2331E-05	0.21768	0.00010782	0.38391	0.00019015	495.2848789013951	45.435	0.48835	45.523	45.301	45.79	0.087543					44	18	3	0	0	0	0.0085356	2	8782	8782;8831		71.708	35.202	1	206370			21195	1643	14008	14154	28816;28817	28816					0.06057439097662609
TTYKVNVF	8	Unmodified	_TTYKVNVF_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7372131347656	2	486.263468	970.512382	-0.1133	-5.5094E-05	0.36408	0.00017704	0.25078	0.00012194	486.26355045001907	71.975	0.47301	71.975	71.755	72.228	0					27	16	2	0	0	0	0.34837	1	16983	16983		21.747	3.6117	1	153070			21196	1726	14009	14155	28818	28818					0.025946690402406603
TTYKVNVF	8	Unmodified	_TTYKVNVF_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2631530761719	2	486.263468	970.512382	-0.054659	-2.6579E-05	0.45677	0.00022211	0.40211	0.00019553	486.2635027506233	71.835	0.56122	71.891	71.677	72.239	0.055939					24	19	2	0	0	0	0.4772	1	16832	16832		15.847	1.0089	1	146800			21197	1726	14009	14155	28819	28819					0.025946690402406603
TTYKVNVF	8	Unmodified	_TTYKVNVF_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	486.263468	970.512382	-0.054659	-2.6579E-05	0.45677	0.00022211	0.40211	0.00019553	486.2635027506233	71.835	0.56122	71.891	71.677	72.239	0.055939	-0.042257	5.921E-05	NaN	21.747	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146800			21198	1726	14009	14155							0.025946690402406603
TVAPPALSL	9	Unmodified	_TVAPPALSL_					0	0	0			REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF	REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.7600402832031	2	434.760561	867.506569	0.71363	0.00031026	-1.0155	-0.00044151	-0.30189	-0.00013125	434.7600067418568	54.928	0.93722	54.928	54.614	55.551	0					48	34	2	0	0	0	0.12809	1	11825	11825		26.884	0	1	111210	+		21199	12489	14010	14156	28820	28820					0.06751570528570028
TVAVCSVPLL	10	Unmodified	_TVAVCSVPLL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.29119873046875	2	501.288628	1000.5627	0.28404	0.00014239	3.2792	0.0016438	3.5632	0.0017862	501.290320877473	83.255	0.71001	83.277	82.931	83.641	0.021744					53	24	3	0	0	0	0.41688	1	20230	20230		10.074	1.9184	1	233480			21200	1632	14011	14157	28821	28821					0.06244455373735036
TVDSHEPRL	9	Unmodified	_TVDSHEPRL_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2698974609375	2	527.269813	1052.52507	-0.16443	-8.6697E-05	0.022676	1.1956E-05	-0.14175	-7.4741E-05	527.2697878110238	27.817	0.51122	27.817	27.654	28.165	0					74	30	3	0	0	0	0.17428	2	3642	3642;3681		21.537	10.713	1	112580			21201	5528	14012	14158	28822;28823	28822					0.0009108043248033937
TVDSHEPRL	9	Unmodified	_TVDSHEPRL_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2700805664062	2	527.269813	1052.52507	-0.18111	-9.5494E-05	0.26126	0.00013776	0.080151	4.2261E-05	527.2698844509404	27.686	0.64912	27.768	27.632	28.281	0.082134					78	38	4	0	0	0	0.2125	2	3471	3471;3510		17.113	6.289	1	135440			21202	5528	14012	14158	28824;28825	28824					0.0009108043248033937
TVEEHLYFY	9	Unmodified	_TVEEHLYFY_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.7785034179688	2	600.782222	1199.54989	0.38407	0.00023075	-3.7875	-0.0022754	-3.4034	-0.0020447	600.7796831115991	48.001	0.42907	48.001	47.795	48.224	0					24	14	2	0	0	0	0.3354	1	9760	9760		2.0598	0.21551	1	87257			21203	3209	14013	14159	28826	28826					-0.041902844847982124
TVEESFCC	8	Unmodified	_TVEESFCC_					0	0	0			REV__ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	REV__ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1721496582031	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.687	1	27.687	27.187	28.187	0								0	0	0	0.38822	1	3619	3619		0.69038	0.088878	1		+		21204	8430	14014	14160	28827	28827					-0.1308575503933298
TVEISLYDR	9	Unmodified	_TVEISLYDR_					0	0	0			REV__ENST00000302313.9_1_3:39136340-39136397:+|nuORF	REV__ENST00000302313.9_1_3:39136340-39136397:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7889404296875	2	548.287671	1094.56079	0.28355	0.00015547	-0.33998	-0.00018641	-0.05643	-3.094E-05	548.2873981198446	15.595	0.14528	15.668	15.615	15.76	0.072399					31	18	2	0	0	0	0.34704	1	519	519		0.52476	0	1	15334	+		21205	11350	14015	14161	28828	28828					0.017291178894765835
TVEISLYDR	9	Unmodified	_TVEISLYDR_					0	0	0			REV__ENST00000302313.9_1_3:39136340-39136397:+|nuORF	REV__ENST00000302313.9_1_3:39136340-39136397:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	548.287671	1094.56079	-0.33773	-0.00018517	0.54755	0.00030021	0.20982	0.00011504	548.2879820498928	15.642	0.15523	15.642	15.54	15.695	0	-0.012965	0.00073137	NaN	0.52476	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11996	+		21206	11350	14015	14161							0.017291178894765835
TVEPIGALI	9	Unmodified	_TVEPIGALI_					0	0	0			REV__ENST00000581912.1_3_18:72166628-72166823:+|nuORF	REV__ENST00000581912.1_3_18:72166628-72166823:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.77362060546875	2	456.773668	911.532783	0.93152	0.00042549	-0.74667	-0.00034106	0.18485	8.4433E-05	456.77325741908203	80.786	0.48559	80.786	80.571	81.056	0					38	16	3	0	0	0	0.21398	1	19738	19738		16.942	0	1	230810	+		21207	12554	14016	14162	28829	28829					0.07347839700048553
TVFDQPQE	8	Unmodified	_TVFDQPQE_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF;DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;nc|ENSG00000103423|Q96EY1-3|DNAJA3;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2244567871094	2	482.224539	962.434526	0.4502	0.0002171	-0.25088	-0.00012098	0.19931	9.6114E-05	482.22420958840394	65.94	0.77571	65.94	65.704	66.48	0					45	27	3	0	0	0	0.016688	2	15140	15140;15185		85.272	22.699	1	429390			21208	7205	14017	14163	28830;28831	28830					-0.048193886158060195
TVFDQPQE	8	Unmodified	_TVFDQPQE_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF;DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;nc|ENSG00000103423|Q96EY1-3|DNAJA3;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2247009277344	2	482.224539	962.434526	0.28371	0.00013681	0.086454	4.169E-05	0.37017	0.0001785	482.22451527938256	65.845	0.79409	65.912	65.71	66.504	0.066872					48	29	2	0	0	0	0.034043	3	15029	14988;15029;15090		108	29.848	1	364660			21209	7205	14017	14163	28832;28833;28834	28833					-0.048193886158060195
TVFFERFKE	9	Unmodified	_TVFFERFKE_					0	0	0			REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8115234375	2	601.813856	1201.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107	1	107.02	106.52	107.52	0.025711								0	0	0	0.28527	1	27405	27405		2.0598	0	1		+		21210	11067	14018	14164	28835	28835					0.020417010230858068
TVFLFGLLS	9	Unmodified	_TVFLFGLLS_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7922668457031	2	498.791861	995.569169	0.61411	0.00030631	-2.3143	-0.0011544	-1.7002	-0.00084806	498.79166948960545	97.859	0.18767	97.9	97.77	97.957	0.040855					9	8	2	0	0	0	0.30005	1	24755	24755		6.7232	0	1	36534			21211	984	14019	14165	28836	28836					0.07120716596762122
TVFPYEPFL	9	Unmodified	_TVFPYEPFL_					0	0	0		nc|ENSG00000009335|Q15386-3|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7869873046875	2	556.786776	1111.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.674	1	90.674	90.174	91.174	0								0	0	0	4.649E-05	1	22709	22709		96.285	47.939	1				21212	403	14020	14166	28837	28837					0.007681088715116857
TVFPYEPFL	9	Unmodified	_TVFPYEPFL_					0	0	0		nc|ENSG00000009335|Q15386-3|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7869262695312	2	556.786776	1111.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.786	1	90.821	90.321	91.321	0.035446								0	0	0	0.015548	1	22585	22585		65.235	20.828	1				21213	403	14020	14166	28838	28838					0.007681088715116857
TVGLEFVVEI	10	Unmodified	_TVGLEFVVEI_					0	0	0			REV__ENSG00000145384|ENST00000274024|FABP2	REV__ENSG00000145384|ENST00000274024|FABP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8306274414062	2	553.310615	1104.60668	0.7657	0.00042367	0.40632	0.00022482	1.172	0.00064849	553.3107453189963	85.642	0.59328	85.667	85.441	86.035	0.025177					50	22	3	0	0	0	0.42335	1	21102	21102		9.3831	0	1	366070	+		21214	9518	14021	14167	28839	28839					0.05855763071735964
TVGLLASTQR	10	Unmodified	_TVGLLASTQR_					0	0	0			REV__ENST00000465904.1_1_6:109767733-109768483:-|nuORF	REV__ENST00000465904.1_1_6:109767733-109768483:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038330078125	2	523.303655	1044.59276	0.21754	0.00011384	0.27522	0.00014402	0.49276	0.00025786	523.3036921489829	82.816	2.4442	82.838	81.969	84.413	0.021744					340	93	4	0	0	0	0.45133	1	19969	19969		4.5289	4.5289	1	3939600	+		21215	11995	14022	14168	28840	28840					0.07224530363282611
TVHEILQAAM	10	Unmodified	_TVHEILQAAM_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7913818359375	2	556.792066	1111.56958	0.31594	0.00017591	-2.3381	-0.0013018	-2.0222	-0.0011259	556.7910173674202	51.657	0.38327	51.657	51.475	51.858	0					24	12	3	0	0	0	0.43972	1	10808	10808		6.7232	0.51738	1	134430			21216	4564	14023	14169	28841	28841					0.018257682542753173
TVHERCVSR	9	Unmodified	_TVHERCVSR_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.775390625	2	543.777282	1085.54001	0.26355	0.00014331	-0.74217	-0.00040357	-0.47861	-0.00026026	543.7768667871305	15.323	0.31949	15.396	15.295	15.615	0.072399					91	40	3	0	0	0	0.28919	2	495	490;495		8.1555	3.8263	1	104500			21217	632	14024	14170	28842;28843	28843					0.0006624902880503214
TVHYFSFLI	9	Unmodified	_TVHYFSFLI_					0	0	0			REV__DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant	REV__DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.8001708984375	2	563.800217	1125.58588	0.029004	1.6352E-05	0.64098	0.00036139	0.66999	0.00037774	563.8003496795578	105.72	0.45067	105.72	105.56	106.01	0					55	45	2	0	0	0	0.25979	1	27261	27261		11.64	0	1	114480	+		21218	7895	14025	14171	28844	28844					0.028112174827356284
TVHYFSFLI	9	Unmodified	_TVHYFSFLI_					0	0	0			REV__DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant	REV__DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	563.800217	1125.58588	0.029004	1.6352E-05	0.64098	0.00036139	0.66999	0.00037774	563.8003496795578	105.72	0.45067	105.72	105.56	106.01	0	-0.094214	5.4422E-05	NaN	11.64	55	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114480	+		21219	7895	14025	14171							0.028112174827356284
TVHYFSFLI	9	Unmodified	_TVHYFSFLI_					0	0	0			REV__DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant	REV__DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	563.800217	1125.58588	0.33069	0.00018645	0.089614	5.0524E-05	0.42031	0.00023697	563.8002654608068	105.88	0.035767	105.91	105.89	105.93	0.029739	0.094214	-0.0005673	NaN	11.64	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43373	+		21220	7895	14025	14171							0.028112174827356284
TVIEREDGL	9	Unmodified	_TVIEREDGL_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.272216796875	2	516.272021	1030.52949	0.22385	0.00011557	0.23662	0.00012216	0.46047	0.00023773	516.272102088262	38.93	0.69406	38.93	38.802	39.496	0					54	26	3	0	0	0	0.18398	2	7014	6966;7014		20.415	2.0414	1	133980			21221	2272	14026	14172	28845;28846	28846					0.01544544855391905
TVIEREDGL	9	Unmodified	_TVIEREDGL_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2721557617188	2	516.272021	1030.52949	0.29869	0.00015421	-0.0029347	-1.5151E-06	0.29576	0.00015269	516.2720937710828	38.883	0.57564	38.97	38.744	39.32	0.086884					42	22	3	0	0	0	0.19307	1	6814	6814		19.362	1.2156	1	106520			21222	2272	14026	14172	28847	28847					0.01544544855391905
TVISEDAVL	9	Unmodified	_TVISEDAVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.7582092285156	2	473.758215	945.501877	0.090278	4.277E-05	0.10601	5.0224E-05	0.19629	9.2994E-05	473.75813789530207	62.205	0.56496	62.205	61.956	62.521	0					42	21	3	0	0	0	0.047633	1	14041	14041		43.858	11.553	1	198290			21223	937	14027	14173	28848	28848					0.026946415951329072
TVISEDAVL	9	Unmodified	_TVISEDAVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.75811767578125	2	473.758215	945.501877	0.038256	1.8124E-05	0.20453	9.69E-05	0.24279	0.00011502	473.7582089628008	62.071	0.44377	62.144	61.953	62.396	0.073421					31	16	3	0	0	0	0.18364	1	13840	13840		20.454	4.6064	1	207460			21224	937	14027	14173	28849	28849					0.026946415951329072
TVKCYFVEE	9	Unmodified	_TVKCYFVEE_					0	0	0			REV__BAZ1A|p.P88Sfs*16|1|0.82|ENSG00000198604|chr14:34862174-34862175|-/A|frameshift_variant	REV__BAZ1A|p.P88Sfs*16|1|0.82|ENSG00000198604|chr14:34862174-34862175|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.76806640625	2	559.26535	1116.51615	0.38887	0.00021748	0.042258	2.3633E-05	0.43112	0.00024111	559.7672841743745	56.166	0.56028	56.166	55.979	56.539	0					55	19	4	0	0	0	0.23216	1	12190	12190		14.838	0.93222	1	546450	+		21225	7736	14028	14174	28850	28850					-0.03745029248239007
TVLFRPIH	8	Unmodified	_TVLFRPIH_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7958984375	2	491.795269	981.575986	-0.10563	-5.1946E-05	1.2409	0.00061025	1.1352	0.0005583	491.795722346888	43.582	1.0909	43.582	43.327	44.418	0					66	38	2	0	0	0	0.53817	1	8380	8380		2.5775	0	1	40531			21226	817	14029	14175	28851	28851					0.08446074267999393
TVLYGYYTL	9	Unmodified	_TVLYGYYTL_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8245239257812	2	546.784233	1091.55391	-0.42725	-0.00023362	-1.6418	-0.0008977	-2.069	-0.0011313	546.7832187133065	41.223	0.86253	41.223	40.787	41.65	0					50	31	2	0	0	0	0.2446	1	7636	7636		11.64	1.5664	1	57539			21227	4270	14030	14176	28852	28852					0.011798050089055323
TVLYMCLF	8	Unmodified	_TVLYMCLF_					0	0	0			REV__ENSG00000171505|ENST00000304880|OR1N1	REV__ENSG00000171505|ENST00000304880|OR1N1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2452392578125	2	495.245375	988.476197	0.3896	0.00019295	0.14831	7.345E-05	0.53791	0.0002664	495.2451772030397	50.151	0.53899	50.224	50.04	50.579	0.07312					27	18	2	0	0	0	0.53423	1	10277	10277		5.2307	0	1	152040	+		21228	10263	14031	14177	28853	28853					-0.01850247452489384
TVNTSLNVYR	10	Unmodified	_TVNTSLNVYR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8119506835938	2	583.811845	1165.60914	-0.28197	-0.00016462	-0.077182	-4.506E-05	-0.35915	-0.00020968	583.8115837757662	41.23	0.4408	41.23	41.046	41.487	0					35	15	3	0	0	0	0.25648	2	7646	7646;7701		27.223	13.317	1	114340			21229	1820	14032	14178	28854;28855	28854					0.032956115293927724
TVNTSLNVYR	10	Unmodified	_TVNTSLNVYR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8110961914062	2	583.811845	1165.60914	0.0014816	8.6498E-07	-0.44432	-0.0002594	-0.44284	-0.00025853	583.8113467694247	41.135	0.50634	41.225	41.067	41.573	0.089645					37	19	3	0	0	0	0.25648	2	7487	7487;7540		27.223	13.317	1	71581			21230	1820	14032	14178	28856;28857	28856					0.032956115293927724
TVPEQLTLL	9	Unmodified	_TVPEQLTLL_					0	0	0			REV__nc|ENSG00000235927|Q8NBZ9|NEXN-AS1	REV__nc|ENSG00000235927|Q8NBZ9|NEXN-AS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.31097412109375	2	507.297507	1012.58046	0.43303	0.00021967	-0.74452	-0.00037769	-0.31149	-0.00015802	507.2971041961985	60.214	0.46746	60.214	59.989	60.456	0					35	16	3	0	0	0	0.29576	1	13392	13392		7.2892	0.56607	1	198440	+		21231	12898	14033	14179	28858	28858					0.07467493900230693
TVPFVYTQI	9	Unmodified	_TVPFVYTQI_					0	0	0			REV__ENSG00000173080|ENST00000368318|RXFP4	REV__ENSG00000173080|ENST00000368318|RXFP4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.2808837890625	2	534.292225	1066.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.129	1	59.2	58.7	59.7	0.071289								0	0	0	0.2428	1	12957	12957		10.824	1.4765	1		+		21232	10309	14034	14180	28859	28859					0.039275112458199146
TVQQGQDASF	10	Unmodified	_TVQQGQDASF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.251708984375	2	540.751453	1079.48835	0.57218	0.00030941	-0.91876	-0.00049682	-0.34659	-0.00018742	541.2522500520604	47.373	0.80817	47.456	47.095	47.904	0.083092					82	31	4	0	0	0	0.34138	1	9364	9364		18.146	0	1	147260			21233	3123	14035	14181	28860	28860					-0.04821216184109289
TVQYSVAQY	9	Unmodified	_TVQYSVAQY_					0	0	0			REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF	REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7611694335938	2	529.761289	1057.50803	0.10543	5.5852E-05	0.047854	2.5351E-05	0.15328	8.1203E-05	529.7613066085911	45.851	0.39956	45.937	45.788	46.187	0.085617					30	15	3	0	0	0	0.083124	1	8932	8932		36.127	10.728	1	131990	+		21234	11788	14036	14182	28861	28861					-0.018428401733444844
TVRATAEV	8	Unmodified	_TVRATAEV_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	423.7375793457031	2	423.737617	845.460681	0.45075	0.000191	-1.0636	-0.00045067	-0.61281	-0.00025967	423.7370825360921	80.342	0.3611	80.366	80.075	80.436	0.023605					22	12	2	0	0	0	0.53858	1	19419	19419		2.3027	0	1	312510	+		21235	9864	14037	14183	28862	28862					0.03176925346315329
TVRATAEV	8	Unmodified	_TVRATAEV_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	423.737617	845.460681	0.99751	0.00042268	-1.3948	-0.00059101	-0.39724	-0.00016833	423.7369192171082	80.187	0.43394	80.187	80.022	80.456	0	-0.089387	-0.00016007	NaN	2.3027	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450930	+		21236	9864	14037	14183							0.03176925346315329
TVRATAEV	8	Unmodified	_TVRATAEV_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	423.737617	845.460681	0.45075	0.000191	-1.0636	-0.00045067	-0.61281	-0.00025967	423.7370825360921	80.342	0.3611	80.366	80.075	80.436	0.023605	0.089387	0.00012061	NaN	2.3027	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312510	+		21237	9864	14037	14183							0.03176925346315329
TVRGEPAATR	10	Unmodified	_TVRGEPAATR_					0	0	0			REV__ENST00000407501.6_1_18:3449895-3450350:+|nuORF	REV__ENST00000407501.6_1_18:3449895-3450350:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7927856445312	2	529.291079	1056.56761	0.064792	3.4294E-05	-1.0898	-0.00057684	-1.025	-0.00054255	529.2906939761882	22.182	0.28081	22.284	22.157	22.438	0.10178					23	19	2	0	0	0	0.4753	1	1945	1945		0	0	1	22697	+		21238	11476	14038	14184	28863	28863					0.04158475560666375
TVRGEPAATR	10	Unmodified	_TVRGEPAATR_					0	0	0			REV__ENST00000407501.6_1_18:3449895-3450350:+|nuORF	REV__ENST00000407501.6_1_18:3449895-3450350:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7991943359375	2	529.291079	1056.56761	0.064792	3.4294E-05	-1.0898	-0.00057684	-1.025	-0.00054255	529.2906939761882	22.182	0.28081	22.284	22.157	22.438	0.10178					23	19	2	0	0	0	0.31857	1	1995	1995		0	0	1	22697	+		21239	11476	14038	14184	28864	28864					0.04158475560666375
TVRLIDREE	9	Unmodified	_TVRLIDREE_					0	0	0			REV__nc|ENSG00000167528|Q96N77-2|ZNF641	REV__nc|ENSG00000167528|Q96N77-2|ZNF641	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8118286132812	2	565.811845	1129.60914	0.27262	0.00015425	-0.27517	-0.00015569	-0.0025457	-1.4404E-06	565.8116985961481	37.685	0.96215	37.769	37.42	38.383	0.084476					52	33	3	0	0	0	0.32614	1	6535	6535		3.2813	0.54611	1	83404	+		21240	10119	14039	14185	28865	28865					0.04951611529349975
TVSGFVLLLI	10	Unmodified	_TVSGFVLLLI_					0	0	0			REV__ENSG00000185885|ENST00000408968|IFITM1	REV__ENSG00000185885|ENST00000408968|IFITM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.753173828125	2	531.333893	1060.65323	0.58299	0.00030976	-1.2349	-0.00065615	-0.65192	-0.00034639	531.3326996754166	100.41	0.16591	100.45	100.36	100.52	0.042839					13	8	3	0	0	0	0.29345	1	25519	25519		24.021	9.1823	1	47472	+		21241	10687	14040	14186	28866	28866					0.12533247693681915
TVSMYIKRVF	10	Unmodified	_TVSMYIKRVF_					0	0	0		ENST00000231368.9_1_5:96365570-96365711:+|nuORF	ENST00000231368.9_1_5:96365570-96365711:+|nuORF	ENST00000231368.9_1_5:96365570-96365711:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3474731445312	2	622.347009	1242.67946	-0.050456	-3.1401E-05	0.91922	0.00057207	0.86876	0.00054067	622.3473921778954	89.889	2.3544	89.923	88.979	91.333	0.034058					155	92	3	0	0	0	0.45794	1	22221	22221		3.2813	0	1	410760			21242	5812	14041	14187	28867	28867					0.0678319359346915
TVSSLIIVR	9	Unmodified	_TVSSLIIVR_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7662658691406	2	494.313492	986.612431	0.31598	0.0001562	-0.32081	-0.00015858	-0.0048272	-2.3862E-06	494.3133169830736	52.893	0.43478	52.893	52.729	53.164	0					24	15	2	0	0	0	0.22912	1	11173	11173		18.146	0	1	88398			21243	825	14042	14188	28868	28868					0.11858906374038725
TVSSLIIVR	9	Unmodified	_TVSSLIIVR_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7662353515625	2	494.313492	986.612431	0.43808	0.00021655	-0.72799	-0.00035986	-0.28991	-0.00014331	494.3129619977926	52.907	0.4268	52.972	52.722	53.149	0.06543					29	18	2	0	0	0	0.19558	1	11066	11066		26.268	0	1	85154			21244	825	14042	14188	28869	28869					0.11858906374038725
TVSTLDNQR	9	Unmodified	_TVSTLDNQR_					0	0	0			REV__nc|ENSG00000204979|Q5J8X5-3|MS4A13	REV__nc|ENSG00000204979|Q5J8X5-3|MS4A13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7092895507812	2	517.26727	1032.51999	-0.10171	-5.2609E-05	0.034822	1.8012E-05	-0.066883	-3.4596E-05	517.2674353388248	27.449	0.21343	27.535	27.5	27.713	0.086699					24	19	2	0	0	0	0.18479	1	3415	3415		20.454	4.6064	1	42068	+		21245	10964	14043	14189	28870	28870					0.005027765698514486
TVTEFMPIL	9	Unmodified	_TVTEFMPIL_					0	0	0			REV__ENSG00000160191|ENST00000291539|PDE9A	REV__ENSG00000160191|ENST00000291539|PDE9A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7803344726562	2	525.780636	1049.54672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.716	1	89.75	89.25	90.25	0.034065								0	0	0	0.2428	1	22258	22258		10.824	0	1		+		21246	9841	14044	14190	28871	28871					0.02392749136834027
TVTLVIVKT	9	Unmodified	_TVTLVIVKT_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;nc|ENSG00000164393|Q8IZF7|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.3173828125	2	487.318243	972.621933	-0.22281	-0.00010858	-0.7239	-0.00035277	-0.94671	-0.00046135	487.3177622859974	112.18	0.68248	112.18	112.04	112.72	0					105	69	2	0	0	0	0.34754	1	28745	28745		0.45834	0	1	1149200			21247	7550	14045	14191	28872	28872					0.13452674659549757
TVTLVIVKT	9	Unmodified	_TVTLVIVKT_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;nc|ENSG00000164393|Q8IZF7|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	487.318243	972.621933	0.10443	5.0892E-05	-1.9754	-0.00096264	-1.871	-0.00091175	487.3168421833273	112.16	0.37025	112.17	112.1	112.47	0.014595	-0.0043712	-0.0010022	NaN	0.45834	66	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698530			21248	7550	14045	14191							0.13452674659549757
TVTSVVSSR	9	Unmodified	_TVTSVVSSR_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.2611999511719	2	468.261456	934.50836	-0.22594	-0.0001058	-0.22876	-0.00010712	-0.4547	-0.00021292	468.2612895055298	28.388	0.5184	28.388	28.221	28.739	0					46	25	2	0	0	0	0.17382	1	3833	3833		21.59	9.3495	1	108560			21249	2869	14046	14192	28873	28873					0.03848579546536257
TVTSVVSSR	9	Unmodified	_TVTSVVSSR_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.2611999511719	2	468.261456	934.50836	-0.34928	-0.00016355	0.27093	0.00012687	-0.07834	-3.6684E-05	468.261481989145	28.32	0.65756	28.402	28.214	28.872	0.082134					68	37	3	0	0	0	0.1019	1	3672	3672		32.037	14.925	1	96555			21250	2869	14046	14192	28874	28874					0.03848579546536257
TVVGENGSVLR	11	Unmodified	_TVVGENGSVLR_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP;ENST00000528037.1_1_11:61891511-61905356:+|nuORF	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8118896484375	2	565.811845	1129.60914	0.24781	0.00014021	-0.37063	-0.00020971	-0.12283	-6.9497E-05	565.8116443403778	37.82	0.74011	37.82	37.442	38.182	0					58	25	3	0	0	0	0.35673	2	6667	6608;6667		11.518	2.8208	1	113180			21251	3407	14047	14193	28875;28876	28876					0.049516115293727125
TVVGENGSVLR	11	Unmodified	_TVVGENGSVLR_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP;ENST00000528037.1_1_11:61891511-61905356:+|nuORF	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.812255859375	2	565.811845	1129.60914	0.27262	0.00015425	-0.27517	-0.00015569	-0.0025457	-1.4404E-06	565.8116985961481	37.685	0.96215	37.769	37.42	38.383	0.084476					52	33	3	0	0	0	0.29396	1	6489	6489		18.721	7.9217	1	83404			21252	3407	14047	14193	28877	28877					0.049516115293727125
TVVWLNDGK	9	Unmodified	_TVVWLNDGK_					0	0	0		ENST00000409725.1_1_2:128284347-128284398:-|nuORF	ENST00000409725.1_1_2:128284347-128284398:-|nuORF	ENST00000409725.1_1_2:128284347-128284398:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.798095703125	2	516.279649	1030.54475	-0.040973	-2.1153E-05	-1.3166	-0.00067971	-1.3575	-0.00070087	516.2792292002722	31.223	0.43391	31.297	31.161	31.595	0.073782					33	21	2	0	0	0	0.25281	1	4590	4590		6.7232	0	1	20552			21253	6399	14048	14194	28878	28878					0.03069456443222407
TVVYFKPAW	9	Unmodified	_TVVYFKPAW_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8021850585938	2	555.80276	1109.59097	0.053035	2.9477E-05	-0.68865	-0.00038275	-0.63561	-0.00035327	555.8023384511185	32.255	0.36317	32.255	32.107	32.47	0					21	13	2	0	0	0	0.34704	1	4959	4959		0.52476	0	1	34974	+		21254	10193	14049	14195	28879	28879					0.04055521345321722
TVWKPRPV	8	Unmodified	_TVWKPRPV_					0	0	0		ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENST00000552109.5_1_12:42554393-42631425:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.79534912109375	2	491.795269	981.575986	-0.021432	-1.054E-05	1.1134	0.00054756	1.092	0.00053702	491.7956564886552	43.518	0.60598	43.607	43.267	43.873	0.088921					38	21	2	0	0	0	0.53894	1	8193	8193		2.0598	1.2661	1	65242			21255	7103	14050	14196	28880	28880					0.08446074267988024
TVYIHELTF	9	Unmodified	_TVYIHELTF_					0	0	0		ENST00000284268.6_1_5:14710442-14710625:-|nuORF	ENST00000284268.6_1_5:14710442-14710625:-|nuORF	ENST00000284268.6_1_5:14710442-14710625:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7792358398438	2	561.795132	1121.57571	0.5013	0.00028163	-0.61644	-0.00034631	-0.11514	-6.4687E-05	561.7946898946011	82.711	0.42339	82.711	82.534	82.957	0					27	14	3	0	0	0	0.21398	1	20262	20262		16.942	1.0951	1	246490			21256	5937	14051	14197	28881	28881					0.01978609757452432
TVYIHELTF	9	Unmodified	_TVYIHELTF_					0	0	0		ENST00000284268.6_1_5:14710442-14710625:-|nuORF	ENST00000284268.6_1_5:14710442-14710625:-|nuORF	ENST00000284268.6_1_5:14710442-14710625:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7786254882812	2	561.795132	1121.57571	0.38435	0.00021592	-0.48947	-0.00027498	-0.10512	-5.9058E-05	561.7947486317277	82.669	0.3993	82.691	82.504	82.904	0.021744					29	13	3	0	0	0	0.25979	1	20086	20086		11.64	0	1	189960			21257	5937	14051	14197	28882	28882					0.01978609757452432
TVYLLLLMI	9	Unmodified	_TVYLLLLMI_					0	0	0		ENST00000522519.5_1_8:72964806-72964878:+|nuORF	ENST00000522519.5_1_8:72964806-72964878:+|nuORF	ENST00000522519.5_1_8:72964806-72964878:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8328857421875	2	539.832672	1077.65079	0.38509	0.00020788	-0.19708	-0.00010639	0.18801	0.00010149	539.8324912809312	89.259	0.66223	89.291	89.009	89.671	0.032265					62	24	3	0	0	0	0.3354	1	22131	22131		2.0598	0	1	278390			21258	6970	14052	14198	28883	28883					0.11507075964345859
TVYLLLLMI	9	Unmodified	_TVYLLLLMI_					0	0	0		ENST00000522519.5_1_8:72964806-72964878:+|nuORF	ENST00000522519.5_1_8:72964806-72964878:+|nuORF	ENST00000522519.5_1_8:72964806-72964878:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	539.832672	1077.65079	0.25243	0.00013627	0.046605	2.5159E-05	0.29903	0.00016143	539.8325430619564	89.257	0.8772	89.257	89.03	89.908	0	-0.017065	0.00016132	NaN	2.0598	76	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305110			21259	6970	14052	14198							0.11507075964345859
TVYLLLLMI	9	Unmodified	_TVYLLLLMI_					0	0	0		ENST00000522519.5_1_8:72964806-72964878:+|nuORF	ENST00000522519.5_1_8:72964806-72964878:+|nuORF	ENST00000522519.5_1_8:72964806-72964878:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	539.832672	1077.65079	0.38509	0.00020788	-0.19708	-0.00010639	0.18801	0.00010149	539.8324912809312	89.259	0.66223	89.291	89.009	89.671	0.032265	0.017065	-0.00010178	NaN	2.0598	62	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278390			21260	6970	14052	14198							0.11507075964345859
TVYLRTLPMK	10	Unmodified	_TVYLRTLPMK_					0	0	0			REV__ENSG00000179826|ENST00000621697|MRGPRX3	REV__ENSG00000179826|ENST00000621697|MRGPRX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3560791015625	2	611.354834	1220.69511	0.30859	0.00018866	2.4054	0.0014705	2.714	0.0016592	611.356186439325	86.298	0.51121	86.323	86.117	86.628	0.025169					35	19	2	0	0	0	0.31818	1	21233	21233		2.7352	0.23671	1	147980	+		21261	10486	14053	14199	28884	28884					0.09359480110515506
TVYNVFFARS	10	Unmodified	_TVYNVFFARS_					0	0	0		ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778076171875	3	401.876746	1202.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.529	1	30.605	30.105	31.105	0.075403								0	0	0	0.33738	1	4332	4332		1.5923	0.37745	1				21262	1977	14054	14200	28885	28885					0.01520816880338316
TVYVSNLPF	9	Unmodified	_TVYVSNLPF_					0	0	0		ENST00000548022.1_1_12:42717790-42719777:-|nuORF;ENSG00000139168|ENST00000266529|ZCRB1	ENST00000548022.1_1_12:42717790-42719777:-|nuORF	ENST00000548022.1_1_12:42717790-42719777:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.7947998046875	2	520.276575	1038.5386	0.55204	0.00028721	3.6475	0.0018977	4.1995	0.0021849	520.2765854775637	80.17	1.3492	80.194	79.936	81.285	0.023605					174	47	5	0	0	0	0.2125	1	19487	19487		17.113	0.96379	1	2523000			21263	2954	14055	14201	28886	28886					0.020869382117098212
TWASSIEAL	9	Unmodified	_TWASSIEAL_					0	0	0		ENSG00000153820|ENST00000392056|SPHKAP;nc|ENSG00000153820|Q2M3C7-2|SPHKAP	ENSG00000153820|ENST00000392056|SPHKAP	ENSG00000153820|ENST00000392056|SPHKAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2514343261719	2	489.250557	976.486562	-0.037601	-1.8396E-05	0.50648	0.00024779	0.46888	0.0002294	489.250873199016	73.346	0.36844	73.346	73.202	73.571	0					23	13	2	0	0	0	0.10067	1	17429	17429		32.305	0	1	317310			21264	3532	14056	14202	28887	28887					-0.002622252020501037
TWAWHDPGVW	10	Unmodified	_TWAWHDPGVW_					0	0	0			REV__ENST00000441302.6_1_3:39142056-39149053:-|nuORF	REV__ENST00000441302.6_1_3:39142056-39149053:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8475952148438	2	627.788173	1253.56179	0.2854	0.00017917	-3.9885	-0.002504	-3.7031	-0.0023248	627.7852421769691	82.706	0.59908	82.706	82.509	83.108	0					21	20	2	0	0	0	0.31496	1	20260	20260		13.906	3.1065	1	125240	+		21265	11886	14057	14203	28888	28888					-0.05484622950962148
TWCLIMLPFA	10	Unmodified	_TWCLIMLPFA_					0	0	0		ENST00000493668.1_1_X:9866192-9900301:+|nuORF	ENST00000493668.1_1_X:9866192-9900301:+|nuORF	ENST00000493668.1_1_X:9866192-9900301:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7950439453125	2	597.806131	1193.59771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.926	1	91.962	91.462	92.462	0.03653								0	0	0	0.33395	1	22931	22931		7.2892	1.5574	1				21266	6820	14058	14204	28889	28889					0.008653749100176356
TWDPALAQI	9	Unmodified	_TWDPALAQI_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7659912109375	2	507.766374	1013.5182	0.010239	5.1988E-06	0.75236	0.00038202	0.76259	0.00038722	507.7664619878966	73.464	0.39719	73.464	73.373	73.77	0					21	14	2	0	0	0	0.03472	2	17472	17472;17489		47.749	16.618	1	135220			21267	2961	14059	14205	28890;28891	28890					0.011977675518778597
TWDPALAQI	9	Unmodified	_TWDPALAQI_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7664489746094	2	507.766374	1013.5182	0.23576	0.00011971	0.46846	0.00023787	0.70423	0.00035758	507.76654583766043	73.421	0.51532	73.474	73.364	73.88	0.052567					33	20	3	0	0	0	0.07372	1	17307	17307		38.176	9.094	1	190040			21268	2961	14059	14205	28892	28892					0.011977675518778597
TWFTAGAKLLF	11	Unmodified	_TWFTAGAKLLF_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8474731445312	2	627.847699	1253.68084	0.43464	0.00027289	-0.33166	-0.00020823	0.10298	6.4653E-05	627.8473367739197	82.124	2.4048	82.124	81.81	84.215	0					227	83	4	0	0	0	1.5133E-08	8	20112	20112;20156;20208;20325;20374;20393;20430;20483		166.77	141.78	1	2976400			21269	4402	14060	14206	28893;28894;28895;28896;28897;28898;28899;28900	28893					0.06415150953898774
TWFTAGAKLLF	11	Unmodified	_TWFTAGAKLLF_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8472290039062	2	627.847699	1253.68084	0.34595	0.0002172	-0.21224	-0.00013326	0.13371	8.3947E-05	627.8474332786707	82.1	2.4478	82.122	81.818	84.266	0.021866					242	87	4	0	0	0	1.5133E-08	8	19915	19915;19967;20016;20066;20118;20162;20258;20310		166.77	135.5	1	3040300			21270	4402	14060	14206	28901;28902;28903;28904;28905;28906;28907;28908	28901					0.06415150953898774
TWGDNSELSF	10	Unmodified	_TWGDNSELSF_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2518310546875	2	578.251286	1154.48802	0.24142	0.0001396	1.26	0.00072862	1.5015	0.00086822	578.7532626386644	74.035	0.70955	74.035	73.716	74.426	0					27	25	2	0	0	0	0.34138	1	17612	17612		18.146	3.741	1	226650	+		21271	10399	14061	14207	28909	28909					-0.08304635903959934
TWGQYHFETF	10	Unmodified	_TWGQYHFETF_					0	0	0		ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2044982910156	3	439.196256	1314.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.292	1	57.361	56.861	57.861	0.068375								0	0	0	0.33711	1	12399	12399		3.5871	1.6807	1				21272	4114	14062	14208	28910	28910					-0.0777636387902021
TWHKQDAL	8	Unmodified	_TWHKQDAL_					0	0	0			REV__ENST00000587250.3_1_17:41178007-41180165:+|nuORF	REV__ENST00000587250.3_1_17:41178007-41180165:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.74322509765625	2	499.756341	997.498129	0.13224	6.6086E-05	0.012484	6.239E-06	0.14472	7.2325E-05	499.75608754149755	35.262	0.422	35.262	35.088	35.51	0					35	14	3	0	0	0	0.53423	1	5928	5928		5.2307	0	1	60451	+		21273	12566	14063	14209	28911	28911					-0.0007198338804528248
TWKFGRGH	8	Unmodified	_TWKFGRGH_					0	0	0			REV__ENST00000493039.5_1_20:54974372-54978572:+|nuORF	REV__ENST00000493039.5_1_20:54974372-54978572:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.75958251953125	2	494.759218	987.503883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.16	1	115.16	114.66	115.66	0								0	0	0	0.38822	1	29387	29387		0	0	1		+		21274	12160	14064	14210	28912	28912					0.009631599142949199
TWLVNSAAHLF	11	Unmodified	_TWLVNSAAHLF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8327026367188	2	629.83258	1257.65061	0.17882	0.00011263	-0.093856	-5.9114E-05	0.084962	5.3512E-05	629.8326807203539	74.314	0.67947	74.314	74.144	74.823	0					39	24	3	0	0	0	0.17796	1	17732	17732		40.725	23.612	1	128300			21275	1119	14065	14211	28913	28913					0.03208792288683071
TWLVNSAAHLF	11	Unmodified	_TWLVNSAAHLF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.8330078125	2	629.83258	1257.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.305	1	74.354	73.854	74.854	0.048546								0	0	0	0.19227	1	17565	17565		34.222	28.016	1				21276	1119	14065	14211	28914	28914					0.03208792288683071
TWLVVLDAN	9	Unmodified	_TWLVVLDAN_					0	0	0			REV__ENSG00000123454|ENST00000393056|DBH	REV__ENSG00000123454|ENST00000393056|DBH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.79833984375	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.534	1	31.607	31.107	32.107	0.073782								0	0	0	0.25692	1	4631	4631		7.9102	1.187	1		+		21277	8934	14066	14212	28915	28915					0.03590340585992635
TWMMLYPQRM	10	Unmodified	_TWMMLYPQRM_					0	0	0			REV__ENST00000528501.5_1_11:47834563-47834888:-|nuORF	REV__ENST00000528501.5_1_11:47834563-47834888:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8804016113281	3	452.880228	1355.61885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.566	1	85.566	85.066	86.066	0								0	0	0	0.33965	1	21156	21156		0.62683	0.12087	1		+		21278	12342	14067	14213	28916	28916					-0.04472983052778545
TWMMLYPQRM	10	Unmodified	_TWMMLYPQRM_					0	0	0			REV__ENST00000528501.5_1_11:47834563-47834888:-|nuORF	REV__ENST00000528501.5_1_11:47834563-47834888:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8701477050781	3	452.880228	1355.61885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.67	1	85.67	85.17	86.17	0								0	0	0	0.33965	1	21188	21188		0.62683	0.063655	1		+		21279	12342	14067	14213	28917	28917					-0.04472983052778545
TWPDCLLPLL	10	Unmodified	_TWPDCLLPLL_					0	0	0		ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1	ENSG00000242866|ENST00000450892|STRC	ENSG00000242866|ENST00000450892|STRC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134765625	2	585.81501	1169.61547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.12	1	105.12	104.62	105.62	0								0	0	0	0.33738	1	27069	27069		3.2813	0	1				21280	5657	14068	14214	28918	28918					0.03744413436538707
TWPLPPCF	8	Unmodified	_TWPLPPCF_					0	0	0			REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.73553466796875	2	480.736031	959.45751	0.011946	5.7431E-06	-1.7749	-0.00085324	-1.7629	-0.00084749	480.73544609650867	58.042	0.30991	58.042	57.881	58.191	0					13	10	2	0	0	0	0.53771	1	12768	12768		2.8892	0	1	78132	+		21281	12543	14069	14215	28919	28919					-0.023840410320303818
TWRAPWLGCS	10	Unmodified	_TWRAPWLGCS_					0	0	0			REV__ENST00000314759.5_1_13:21746799-21750660:-|nuORF	REV__ENST00000314759.5_1_13:21746799-21750660:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7838745117188	2	588.784576	1175.5546	-0.24204	-0.00014251	-0.76672	-0.00045143	-1.0088	-0.00059394	588.7840292288723	14.588	0.085457	14.588	14.55	14.635	0					15	10	2	0	0	0	0.46746	1	398	398		1.4819	0	1	22543	+		21282	11334	14070	14216	28920	28920					-0.026156788230309758
TWRRLFGRR	9	Unmodified	_TWRRLFGRR_					0	0	0		ENST00000483182.5_1_1:38478406-38483425:+|nuORF	ENST00000483182.5_1_1:38478406-38483425:+|nuORF	ENST00000483182.5_1_1:38478406-38483425:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2202453613281	3	416.579257	1246.71594	0.36908	0.00015375	-3.4502	-0.0014373	-3.0812	-0.0012835	416.5778360552813	50.624	0.33075	50.624	50.376	50.707	0					15	11	2	0	0	0	0.25822	1	10438	10438		2.7352	0.64919	1	36606			21283	6767	14071	14217	28921	28921					0.10245251325068239
TWSLTETYF	9	Unmodified	_TWSLTETYF_					0	0	0		ENST00000582151.1_1_17:7486853-7487033:+|nuORF	ENST00000582151.1_1_17:7486853-7487033:+|nuORF	ENST00000582151.1_1_17:7486853-7487033:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2685546875	2	574.268947	1146.52334	0.45377	0.00026059	-0.12997	-7.464E-05	0.32379	0.00018595	574.2685185519514	63.056	1.7628	63.056	62.722	64.485	0					156	64	4	0	0	0	0.29576	1	14518	14518		7.2892	0.56607	1	908210			21284	7225	14072	14218	28922	28922					-0.044059733761287134
TWSPWTLSL	9	Unmodified	_TWSPWTLSL_					0	0	0		ENST00000367137.3_1_1:205759622-205759775:-|nuORF	ENST00000367137.3_1_1:205759622-205759775:-|nuORF	ENST00000367137.3_1_1:205759622-205759775:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7822265625	2	545.782025	1089.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.441	1	92.441	91.941	92.941	0								0	0	0	0.24643	1	23246	23246		10.074	0	1				21285	6173	14073	14219	28923	28923					0.008303405860033308
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.26123046875	2	567.261122	1132.50769	0.15837	8.9839E-05	0.48892	0.00027735	0.64729	0.00036718	567.2612555553809	73.971	1.3117	73.971	73.598	74.91	0					124	47	4	0	0	0	0.0020132	3	17627	17575;17627;17678		115.69	63.424	1	1314400			21286	1965	14074	14220	28924;28925;28926	28925					-0.05326259893195129
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2615356445312	2	567.261122	1132.50769	0.35769	0.0002029	0.080532	4.5683E-05	0.43822	0.00024859	567.261036556475	73.891	1.2549	73.939	73.617	74.872	0.048546					95	45	3	0	0	0	0.0032694	3	17453	17400;17453;17547		108	64.139	1	1136300			21287	1965	14074	14220	28927;28928;28929	28928					-0.05326259893195129
TWTPYNIMVL	10	Unmodified	_TWTPYNIMVL_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3;nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1;ENSG00000184984|ENST00000383263|CHRM5	ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.3180541992188	2	619.317917	1236.62128	0.13801	8.5473E-05	0.40799	0.00025268	0.546	0.00033815	619.3181734512976	97.585	0.42567	97.585	97.461	97.887	0					41	19	3	0	0	0	0.44727	1	24788	24788		5.2969	0.39987	1	185050			21288	2609	14075	14221	28930	28930					0.012435119481779111
TWTPYNIMVL	10	Unmodified	_TWTPYNIMVL_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3;nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1;ENSG00000184984|ENST00000383263|CHRM5	ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	619.317917	1236.62128	0.22693	0.00014054	0.090689	5.6166E-05	0.31762	0.00019671	619.3179696052977	97.533	0.59741	97.574	97.36	97.957	0.040855	-0.0054694	-0.00016587	NaN	5.2969	52	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118940			21289	2609	14075	14221							0.012435119481779111
TWVGLQACTSF	11	Unmodified	_TWVGLQACTSF_					0	0	0			REV__ENST00000340648.5_1_21:45113746-45114010:+|nuORF	REV__ENST00000340648.5_1_21:45113746-45114010:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.8602294921875	3	404.862108	1211.56449	0.084461	3.4195E-05	-1.932	-0.00078218	-1.8475	-0.00074798	404.8606511715811	50.703	0.40279	50.776	50.579	50.982	0.07312					33	14	3	0	0	0	0.40738	1	10394	10394		2.6312	0.54523	1	85607	+		21290	11457	14076	14222	28931	28931					-0.03282535608309445
TWVGLQACTSF	11	Unmodified	_TWVGLQACTSF_					0	0	0			REV__ENST00000340648.5_1_21:45113746-45114010:+|nuORF	REV__ENST00000340648.5_1_21:45113746-45114010:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	404.862108	1211.56449	0.38384	0.0001554	-1.2675	-0.00051317	-0.88367	-0.00035777	405.1955455657314	50.798	0.38325	50.798	50.651	51.034	0	0.010912	0.00049918	NaN	2.6312	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53103	+		21291	11457	14076	14222							-0.03282535608309445
TWVGLQACTSF	11	Unmodified	_TWVGLQACTSF_					0	0	0			REV__ENST00000340648.5_1_21:45113746-45114010:+|nuORF	REV__ENST00000340648.5_1_21:45113746-45114010:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	404.862108	1211.56449	0.084461	3.4195E-05	-1.932	-0.00078218	-1.8475	-0.00074798	404.8606511715811	50.703	0.40279	50.776	50.579	50.982	0.07312	-0.010912	-0.00030784	NaN	2.6312	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85607	+		21292	11457	14076	14222							-0.03282535608309445
TWVVCEFFVS	10	Unmodified	_TWVVCEFFVS_					0	0	0			REV__ENST00000483040.1_1_10:132891427-132954311:-|nuORF	REV__ENST00000483040.1_1_10:132891427-132954311:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5362854003906	3	406.195087	1215.56343	0.08496	3.451E-05	2.7468	0.0011157	2.8317	0.0011502	406.1963729167709	43.725	0.19115	43.725	43.638	43.829	0					8	6	2	0	0	0	0.31838	1	8441	8441		1.7423	0.54893	1	13431	+		21293	12109	14077	14223	28932	28932					-0.035727499772292504
TWWVCLVVC	9	Unmodified	_TWWVCLVVC_					0	0	0			REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF	REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7852172851562	2	554.769548	1107.52454	0.015693	8.7059E-06	-1.0867	-0.00060286	-1.071	-0.00059415	554.7687453553482	45.713	0.56521	45.713	45.474	46.039	0					46	19	3	0	0	0	0.25504	1	9115	9115		4.756	2.4533	1	159480	+		21294	10645	14078	14224	28933	28933					-0.024917538125691863
TWYPVSIPAF	10	Unmodified	_TWYPVSIPAF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8052368164062	2	590.8055	1179.59645	0.59226	0.00034991	-0.47348	-0.00027974	0.11878	7.0174E-05	590.8051943673264	92.008	1.9752	92.008	91.735	93.71	0					169	75	3	0	0	0	2.6506E-05	7	23128	23089;23128;23251;23298;23394;23484;23527		126.57	90.439	1	3104800			21295	4105	14079	14225	28934;28935;28936;28937;28938;28939;28940	28935					0.01383200137138374
TWYPVSIPAF	10	Unmodified	_TWYPVSIPAF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.805419921875	2	590.8055	1179.59645	0.54458	0.00032174	-0.10677	-6.3083E-05	0.4378	0.00025866	590.8054925410444	91.97	1.9148	92.006	91.72	93.635	0.03653					150	73	3	0	0	0	0.018646	7	22914	22914;23144;23196;23328;23341;23373;23397		69.105	50.732	1	3011600			21296	4105	14079	14225	28941;28942;28943;28944;28945;28946;28947	28941					0.01383200137138374
TWYSEIRYS	9	Unmodified	_TWYSEIRYS_					0	0	0			REV__nc|ENSG00000068912|Q96DZ1-2|ERLEC1	REV__nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2987670898438	2	602.785296	1203.55604	0.58501	0.00035263	-2.0313	-0.0012245	-1.4463	-0.00087183	602.7839177424983	91.955	0.27802	91.991	91.911	92.189	0.036522					15	9	2	0	0	0	0.25051	1	22964	22964		7.9102	0	1	36219	+		21297	8135	14080	14226	28948	28948					-0.0375976625327894
TYAAVCVTLN	10	Unmodified	_TYAAVCVTLN_					0	0	0			REV__ENST00000599659.5_1_19:41725288-41749617:+|nuORF	REV__ENST00000599659.5_1_19:41725288-41749617:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2822265625	2	527.765517	1053.51648	0.15606	8.2362E-05	-0.44152	-0.00023302	-0.28547	-0.00015066	527.7653883191501	51.368	0.88153	51.368	50.68	51.562	0					39	29	2	0	0	0	0.31496	1	10618	10618		13.906	3.0821	1	96919	+		21298	10122	14081	14227	28949	28949					-0.008136095283589384
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8196411132812	2	565.819473	1129.62439	-0.20443	-0.00011567	0.1869	0.00010575	-0.017526	-9.9164E-06	565.8194689969749	27.859	0.63458	27.859	27.699	28.334	0					91	34	4	0	0	0	0.24767	1	3762	3762		13.042	6.8367	1	120940			21299	7529;3480	14082	14228	28950	28950					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8194580078125	2	565.819473	1129.62439	-0.16663	-9.4281E-05	0.25697	0.0001454	0.090346	5.1119E-05	565.8195419047706	27.717	0.56032	27.799	27.622	28.182	0.082134					97	34	4	0	0	0	0.01073	3	3501	3464;3501;3577		64.927	42.269	1	223310			21300	7529;3480	14082	14228	28951;28952;28953	28952					0.06476523117225952
TYAKANSF	8	Unmodified	_TYAKANSF_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.2230224609375	2	451.224342	900.434132	0.17633	7.9564E-05	-0.63667	-0.00028728	-0.46034	-0.00020772	451.22282670901853	48.411	0.92516	48.491	48.134	49.059	0.080032					50	31	3	0	0	0	0.53345	1	9783	9783		5.7604	0	1	88981	+		21301	10677	14083	14229	28954	28954					-0.020067635450004673
TYAKQYEEF	9	Unmodified	_TYAKQYEEF_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7723388671875	2	589.771854	1177.52915	-0.33807	-0.00019938	-0.34455	-0.0002032	-0.68261	-0.00040259	589.7718307053875	41.191	0.4104	41.191	40.996	41.407	0					38	14	3	0	0	0	0.26104	2	7626	7626;7680		11.495	5.2889	1	93839			21302	1743	14084	14230	28955;28956	28955					-0.05250874864486832
TYAKQYEEF	9	Unmodified	_TYAKQYEEF_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7713623046875	2	589.771854	1177.52915	-0.11412	-6.7307E-05	-0.24517	-0.0001446	-0.3593	-0.0002119	589.7718130479982	41.105	0.41701	41.194	41.011	41.428	0.089645					28	14	3	0	0	0	0.15482	2	7494	7489;7494		23.79	16.501	1	71795			21303	1743	14084	14230	28957;28958	28958					-0.05250874864486832
TYAMHPVFSM	10	Unmodified	_TYAMHPVFSM_					0	0	0			REV__ZEB2|p.L932V|1|0.33|ENSG00000169554|chr2:144398393-144398393|G/C|missense_variant	REV__ZEB2|p.L932V|1|0.33|ENSG00000169554|chr2:144398393-144398393|G/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.270751953125	2	592.26737	1182.52019	0.21076	0.00012483	2.493	0.0014765	2.7038	0.0016014	592.2689710829184	89.649	0.46844	89.683	89.437	89.906	0.034058					22	17	2	0	0	0	0.44246	1	22189	22189		6.2058	1.8765	1	58545	+		21304	13339	14085	14231	28959	28959					-0.06377263026161017
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.823974609375	2	621.823889	1241.63323	0.21343	0.00013271	0.22233	0.00013825	0.43575	0.00027096	621.823862942667	98.179	1.0837	98.179	97.995	99.078	0					199	63	5	0	0	0	7.0247E-14	5	24993	24956;24993;25036;25078;25233		179.17	131.42	1	2877000			21305	3647	14086	14232	28960;28961;28962;28963;28964	28961					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.2568969726562	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.08	1	99.08	98.58	99.58	0								0	0	0	0.23586	1	25265	25265		22.658	11.859	1				21306	3647	14086	14232	28965	28965					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8240966796875	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.131	1	99.131	98.631	99.631	0								0	0	0	0.23586	1	25281	25281		22.658	11.859	1				21307	3647	14086	14232	28966	28966					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8236083984375	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.28	1	99.28	98.78	99.78	0								0	0	0	0.29996	1	25326	25326		14.405	3.6059	1				21308	3647	14086	14232	28967	28967					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8245849609375	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.46	1	99.46	98.96	99.96	0								0	0	0	0.26914	1	25381	25381		18.373	7.5492	1				21309	3647	14086	14232	28968	28968					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.823974609375	2	621.823889	1241.63323	0.33011	0.00020527	0.17415	0.00010829	0.50427	0.00031356	621.8238172747957	98.194	1.1699	98.236	97.983	99.153	0.041931					175	68	5	0	0	0	1.1368E-15	4	24866	24787;24827;24866;24908		195.45	147.7	1	2167700			21310	3647	14086	14232	28969;28970;28971;28972	28971					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8236694335938	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.964	1	99.006	98.506	99.506	0.041931								0	0	0	0.15597	1	25076	25076		33.445	22.645	1				21311	3647	14086	14232	28973	28973					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.82421875	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.1	1	99.142	98.642	99.642	0.042839								0	0	0	0.19053	1	25115	25115		28.495	13.246	1				21312	3647	14086	14232	28974	28974					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8240966796875	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.252	1	99.295	98.795	99.795	0.042839								0	0	0	0.26914	1	25161	25161		18.373	7.5736	1				21313	3647	14086	14232	28975	28975					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8238525390625	2	621.823889	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.379	1	99.422	98.922	99.922	0.042839								0	0	0	0.29996	1	25200	25200		14.405	3.6059	1				21314	3647	14086	14232	28976	28976					0.022074519630450595
TYAPVAFRYF	10	Unmodified	_TYAPVAFRYF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.8427734375	2	617.816399	1233.61824	-0.062984	-3.8913E-05	4.0503	0.0025023	3.9873	0.0024634	617.8168291331996	68.421	0.58926	68.421	68.186	68.775	0					57	20	5	0	0	0	0.11843	1	15941	15941		65.474	52.431	1	323370			21315	5069	14087	14233	28977	28977					0.010780048856986468
TYARNLPAF	9	Unmodified	_TYARNLPAF_					0	0	0		ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7797241210938	2	526.779816	1051.54508	0.20699	0.00010904	-0.17994	-9.4788E-05	0.027055	1.4252E-05	526.7795362030366	50.278	0.8683	50.351	49.927	50.795	0.07312					64	30	3	0	0	0	0.24021	1	10325	10325		13.906	5.9959	1	271030			21316	2439	14088	14234	28978	28978					0.021368761630810695
TYASRLYRT	9	Unmodified	_TYASRLYRT_					0	0	0		FGF3|p.V137E|1|0.4|ENSG00000186895|chr11:69810615-69810615|A/T|missense_variant;ENSG00000186895|ENST00000334134|FGF3	FGF3|p.V137E|1|0.4|ENSG00000186895|chr11:69810615-69810615|A/T|missense_variant	FGF3|p.V137E|1|0.4|ENSG00000186895|chr11:69810615-69810615|A/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8194580078125	2	565.80128	1129.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.035	1	28.035	27.535	28.535	0								0	0	0	0.27427	1	3719	3719		4.3292	0	1				21317	5099	14089	14235	28979	28979					0.02839646220513714
TYCFGRTVE	9	Unmodified	_TYCFGRTVE_					0	0	0		ENSG00000177646|ENST00000308982|ACAD9;ENST00000511325.1_1_3:128623240-128628375:+|nuORF	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2474365234375	2	538.247492	1074.48043	-0.10606	-5.7088E-05	0.98984	0.00053278	0.88378	0.00047569	538.2479215961654	44.149	1.4582	44.149	43.719	45.177	0					96	51	3	0	0	0	0.18398	1	8602	8602		20.415	6.5085	1	142290			21318	4712	14090	14236	28980	28980					-0.053830667052125136
TYCYGPRVD	9	Unmodified	_TYCYGPRVD_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.78857421875	2	537.239667	1072.46478	0.28025	0.00015056	-0.69907	-0.00037557	-0.41883	-0.00022501	537.2392261801341	34.316	0.73624	34.392	34.118	34.854	0.076244					40	31	2	0	0	0	0.25504	1	5386	5386		4.756	2.1785	1	25129	+		21319	10063	14091	14237	28981	28981					-0.06855353222272242
TYDAHHSA	8	Unmodified	_TYDAHHSA_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.72845458984375	2	451.193574	900.372594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.25	1	64.25	63.75	64.75	0								0	0	0	0.38822	1	14656	14656		2.5775	0	1				21320	3036	14092	14238	28982	28982					-0.08157695244290153
TYDEIFYTL	9	Unmodified	_TYDEIFYTL_					0	0	0		ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.8053588867188	2	582.776605	1163.53866	0.91706	0.00053444	-1.2625	-0.00073577	-0.34546	-0.00020133	582.7756140266742	84.838	0.25333	84.838	84.704	84.957	0					17	10	2	0	0	0	0.090621	1	20898	20898		46.021	30.174	1	181110			21321	1649	14093	14239	28983	28983					-0.03657106578953062
TYDEIFYTL	9	Unmodified	_TYDEIFYTL_					0	0	0		ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.80615234375	2	582.776605	1163.53866	0.83272	0.00048529	-1.0358	-0.00060364	-0.20308	-0.00011835	582.7756716624942	84.797	0.34452	84.82	84.691	85.035	0.023125					21	15	2	0	0	0	0.081719	1	20766	20766		49.933	29.518	1	183520			21322	1649	14093	14239	28984	28984					-0.03657106578953062
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.23492431640625	2	511.234907	1020.45526	-0.15327	-7.8357E-05	1.6452	0.00084108	1.4919	0.00076272	511.2349602281944	40.024	1.6583	40.024	39.722	41.38	0					153	58	5	0	0	0	0.030728	3	7336	7294;7336;7376		69.105	42.221	1	735210			21323	2957	14094	14240	28985;28986;28987	28986					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.23492431640625	2	511.234907	1020.45526	-0.019371	-9.9031E-06	1.4148	0.0007233	1.3954	0.00071339	511.23492292518665	39.923	1.4813	40.012	39.728	41.21	0.088562					167	57	5	0	0	0	0.023045	3	7144	7144;7187;7233		75.761	43.455	1	660620			21324	2957	14094	14240	28988;28989;28990	28988					-0.05414798236131446
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.2627563476562	2	576.259445	1150.50434	0.19033	0.00010968	-0.18382	-0.00010593	0.0065158	3.7548E-06	576.2592476190208	36.304	0.83725	36.304	36.105	36.942	0					65	31	3	0	0	0	0.27929	1	6169	6169		9.3831	3.1773	1	120930			21325	2921	14095	14241	28991	28991					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2595825195312	2	576.259445	1150.50434	0.22342	0.00012875	0.15216	8.7685E-05	0.37558	0.00021643	576.2593727545665	36.264	0.55815	36.345	36.159	36.717	0.081715					54	22	3	0	0	0	0.088609	1	6044	6044		34.932	24.108	1	118370			21326	2921	14095	14241	28992	28992					-0.06489509947186889
TYDPWIGKL	9	Unmodified	_TYDPWIGKL_					0	0	0		ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF;ENST00000462639.1_1_X:23803380-23803605:+|nuORF	ENSG00000130066|ENST00000379270|SAT1	ENSG00000130066|ENST00000379270|SAT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8010864257812	2	546.78985	1091.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.41	1	62.41	61.91	62.91	0								0	0	0	0.059996	1	14095	14095		45.7	25.246	1				21327	2449	14096	14242	28993	28993					0.023026271030403223
TYDPWIGKL	9	Unmodified	_TYDPWIGKL_					0	0	0		ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF;ENST00000462639.1_1_X:23803380-23803605:+|nuORF	ENSG00000130066|ENST00000379270|SAT1	ENSG00000130066|ENST00000379270|SAT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.8008422851562	2	546.78985	1091.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.562	1	62.562	62.062	63.062	0								0	0	0	0.090696	1	14141	14141		36.127	10.728	1				21328	2449	14096	14242	28994	28994					0.023026271030403223
TYDPWIGKL	9	Unmodified	_TYDPWIGKL_					0	0	0		ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF;ENST00000462639.1_1_X:23803380-23803605:+|nuORF	ENSG00000130066|ENST00000379270|SAT1	ENSG00000130066|ENST00000379270|SAT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8009643554688	2	546.78985	1091.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.287	1	62.36	61.86	62.86	0.073139								0	0	0	0.059996	1	13915	13915		45.7	11.298	1				21329	2449	14096	14242	28995	28995					0.023026271030403223
TYDPWIGKL	9	Unmodified	_TYDPWIGKL_					0	0	0		ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF;ENST00000462639.1_1_X:23803380-23803605:+|nuORF	ENSG00000130066|ENST00000379270|SAT1	ENSG00000130066|ENST00000379270|SAT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8006591796875	2	546.78985	1091.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.445	1	62.518	62.018	63.018	0.072701								0	0	0	0.072376	1	13964	13964		41.84	11.203	1				21330	2449	14096	14242	28996	28996					0.023026271030403223
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2485961914062	2	597.248546	1192.48254	0.21154	0.00012634	0.19443	0.00011613	0.40598	0.00024247	597.2486615844672	56.172	2.0531	56.172	55.915	57.968	0					123	74	3	0	0	0	9.6107E-13	4	12188	12188;12241;12291;12622		181.69	135.67	1	3219800			21331	1960	14097	14243	28997;28998;28999;29000	28997					-0.10600314695761881
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2485961914062	2	597.248546	1192.48254	0.065326	3.9016E-05	0.076185	4.5502E-05	0.14151	8.4517E-05	597.2486996656627	56.104	1.7192	56.17	55.948	57.667	0.066452					117	64	3	0	0	0	7.7511E-24	3	12039	12039;12085;12134		218.2	176.36	1	3042700			21332	1960	14097	14243	29001;29002;29003	29001					-0.10600314695761881
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2831420898438	2	597.248546	1192.48254	0.15738	9.3995E-05	0.54575	0.00032595	0.70313	0.00041994	597.2486115528349	57.737	0.2803	57.805	57.639	57.919	0.068371					17	10	2	0	0	0	0.24929	1	12540	12540		9.3831	0.63772	1	69056			21333	1960	14097	14243	29004	29004					-0.10600314695761881
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	597.248546	1192.48254	0.17112	0.0001022	0.83296	0.00049748	1.0041	0.00059968	597.249192543778	58.038	0.24908	58.038	57.968	58.217	0	0.11663	0.00013452	NaN	9.3831	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104420			21334	1960	14097	14243							-0.10600314695761881
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant;ENSG00000167842|ENST00000611091|MIS12	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2516479492188	2	555.250557	1108.48656	0.90658	0.00050338	0.025933	1.44E-05	0.93251	0.00051778	555.2507530635014	84.331	1.4398	84.331	84.02	85.459	0					177	72	3	0	0	0	1.0413E-17	3	20785	20751;20785;20821		205.78	141.54	1	4817400			21335	4236	14098	14244	29005;29006;29007	29006					-0.06334225202044763
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant;ENSG00000167842|ENST00000611091|MIS12	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2514038085938	2	555.250557	1108.48656	0.70512	0.00039152	0.21428	0.00011898	0.9194	0.0005105	555.2508540378413	84.343	1.6916	84.365	83.724	85.415	0.022003					198	86	3	0	0	0	1.0413E-17	3	20638	20600;20638;20682		205.78	141.54	1	4681300			21336	4236	14098	14244	29008;29009;29010	29009					-0.06334225202044763
TYEEEESFL	9	Unmodified	_TYEEEESFL_					0	0	0			REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7257080078125	2	573.745502	1145.47645	0.4202	0.00024109	0.59569	0.00034177	1.0159	0.00058286	573.7458531170389	63.556	0.14241	63.627	63.563	63.706	0.071018					5	4	2	0	0	0	0.25051	1	14289	14289		7.9102	0.62092	1	32524	+		21337	9917	14099	14245	29011	29011					-0.09046877717923962
TYEITYYYE	9	Unmodified	_TYEITYYYE_					0	0	0		tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1	tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1	tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7705688476562	2	622.771519	1243.52849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.584	1	41.584	41.084	42.084	0								0	0	0	0.2927	1	7770	7770		0.52476	0	1				21338	13607	14100	14246	29012	29012					-0.08353714304189452
TYEKFFGLL	9	Unmodified	_TYEKFFGLL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8017578125	2	559.30005	1116.58555	0.47969	0.00026829	0.17047	9.5343E-05	0.65016	0.00036363	559.2999098443597	75.672	0.43178	75.672	75.404	75.836	0					39	19	3	0	0	0	0.0047429	1	18124	18124		83.429	48.497	1	706540			21339	3910	14101	14247	29013	29013					0.031917977628836525
TYEKFFGLL	9	Unmodified	_TYEKFFGLL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.300048828125	2	559.30005	1116.58555	0.53011	0.00029649	-0.01625	-9.0884E-06	0.51386	0.0002874	559.2998942906195	75.609	0.34527	75.653	75.47	75.815	0.044037					28	16	2	0	0	0	0.010553	1	17951	17951		65.474	31.371	1	857460			21340	3910	14101	14247	29014	29014					0.031917977628836525
TYELRYFQI	9	Unmodified	_TYELRYFQI_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.8194580078125	2	616.819138	1231.62372	-0.063411	-3.9113E-05	0.093794	5.7854E-05	0.030382	1.874E-05	616.8191909878434	68.69	1.3549	68.69	68.377	69.732	0					122	48	4	0	0	0	0.0028522	4	15975	15975;16024;16066;16101		110.55	76.151	1	1506600			21341	3921	14102	14248	29015;29016;29017;29018	29015					0.01717683677520654
TYELRYFQI	9	Unmodified	_TYELRYFQI_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.8192138671875	2	616.819138	1231.62372	-0.15097	-9.3123E-05	-0.21209	-0.00013082	-0.36307	-0.00022395	616.8190474218449	68.549	1.1739	68.613	68.247	69.421	0.063507					106	44	4	0	0	0	0.0042616	3	15811	15811;15856;15911		100.09	65.689	1	1434300			21342	3921	14102	14248	29019;29020;29021	29019					0.01717683677520654
TYERGTYYF	9	Unmodified	_TYERGTYYF_					0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.2724609375	2	600.272021	1198.52949	0.28988	0.00017401	0.35631	0.00021388	0.64619	0.00038789	600.2725839987944	48.326	0.69924	48.326	48.045	48.744	0					45	23	3	0	0	0	0.17428	2	9810	9810;9862		21.537	12.19	1	111980			21343	1711	14103	14249	29022;29023	29022					-0.061834551446281694
TYERGTYYF	9	Unmodified	_TYERGTYYF_					0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.2720336914062	2	600.272021	1198.52949	0.37796	0.00022688	-0.1086	-6.5189E-05	0.26936	0.00016169	600.2720220811751	48.279	0.64931	48.359	48.134	48.783	0.080032					31	21	2	0	0	0	0.17428	2	9685	9638;9685		21.537	11.463	1	113770			21344	1711	14103	14249	29024;29025	29025					-0.061834551446281694
TYEVFQKYFQ	10	Unmodified	_TYEVFQKYFQ_					0	0	0			REV__ENSG00000121653|ENST00000241014|MAPK8IP1	REV__ENSG00000121653|ENST00000241014|MAPK8IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.5559387207031	3	451.555561	1351.64485	0.25222	0.00011389	0.50048	0.00022599	0.7527	0.00033988	451.5557823112647	104.41	0.12064	104.44	104.4	104.53	0.034004					12	9	2	0	0	0	0.45904	1	26690	26690		3.0723	0.81953	1	80483	+		21345	8901	14104	14250	29026	29026					-0.016903510136216937
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2802734375	2	589.279846	1176.54514	0.29205	0.0001721	-0.10008	-5.8973E-05	0.19197	0.00011313	589.2799078266768	51.58	0.98329	51.58	51.179	52.162	0					68	33	3	0	0	0	0.013066	2	10796	10796;10844		63.227	35.599	1	417440			21346	1964	14105	14251	29027;29028	29027					-0.03607168627581814
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2802124023438	2	589.279846	1176.54514	0.47519	0.00028002	-0.082144	-4.8406E-05	0.39304	0.00023161	589.2797731057886	51.509	0.73162	51.579	51.383	52.115	0.069874					58	26	3	0	0	0	0.032232	2	10630	10630;10676		49.527	26.791	1	387970			21347	1964	14105	14251	29029;29030	29029					-0.03607168627581814
TYFDLWIML	9	Unmodified	_TYFDLWIML_					0	0	0			REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF	REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.303466796875	2	601.301736	1200.58892	0.37789	0.00022723	2.4467	0.0014712	2.8246	0.0016984	601.303692252082	86.068	2.0459	86.068	85.779	87.825	0					191	81	6	0	0	0	0.17247	4	21475	21430;21475;21531;21593		21.747	5.8995	1	16469000	+		21348	11427	14106	14252	29031;29032;29033;29034	29032					-0.003352754547904624
TYFDLWIML	9	Unmodified	_TYFDLWIML_					0	0	0			REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF	REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3035278320312	2	601.301736	1200.58892	0.53219	0.00032001	2.2847	0.0013738	2.8169	0.0016938	601.3035417171458	86.046	1.3758	86.071	85.773	87.149	0.025177					161	56	6	0	0	0	0.21398	2	21314	21314;21345		16.942	1.0951	1	13489000	+		21349	11427	14106	14252	29035;29036	29035					-0.003352754547904624
TYFDLWIML	9	Unmodified	_TYFDLWIML_					0	0	0			REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF	REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8063354492188	2	601.301736	1200.58892	0.31209	0.00018766	3.4131	0.0020523	3.7251	0.0022399	601.8056411128822	87.136	1.0272	87.164	86.965	87.993	0.02758					51	40	2	0	0	0	0.17247	1	21579	21579		21.747	1.293	1	261430	+		21350	11427	14106	14252	29037	29037					-0.003352754547904624
TYFDSVFRL	9	Unmodified	_TYFDSVFRL_					0	0	0		ENSG00000111300|ENST00000261745|NAA25;ENST00000549711.5_1_12:112487373-112518932:-|nuORF;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF	ENSG00000111300|ENST00000261745|NAA25	ENSG00000111300|ENST00000261745|NAA25	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8477783203125	2	574.292756	1146.57096	0.32834	0.00018856	1.0996	0.00063147	1.4279	0.00082003	574.2931638287165	76.512	0.50917	76.512	76.298	76.807	0					25	17	2	0	0	0	0.24366	1	18450	18450		13.042	1.4022	1	162850			21351	1698	14107	14253	29038	29038					0.003537256147183143
TYFDSVFRL	9	Unmodified	_TYFDSVFRL_					0	0	0		ENSG00000111300|ENST00000261745|NAA25;ENST00000549711.5_1_12:112487373-112518932:-|nuORF;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF	ENSG00000111300|ENST00000261745|NAA25	ENSG00000111300|ENST00000261745|NAA25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2936401367188	2	574.292756	1146.57096	0.35859	0.00020594	0.45765	0.00026283	0.81624	0.00046876	574.2931308000173	76.444	0.37076	76.484	76.387	76.758	0.03923					22	13	2	0	0	0	0.14444	1	18233	18233		24.991	14.167	1	146750			21352	1698	14107	14253	29039	29039					0.003537256147183143
TYFFFAPIW	9	Unmodified	_TYFFFAPIW_					0	0	0			REV__ST8SIA3|p.H251Y|1|0.48|ENSG00000177511|chr18:57357361-57357361|C/T|missense_variant	REV__ST8SIA3|p.H251Y|1|0.48|ENSG00000177511|chr18:57357361-57357361|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.244384765625	2	596.29731	1190.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.245	1	91.245	90.745	91.745	0								0	0	0	0.25692	1	22883	22883		7.9102	3.5809	1		+		21353	13007	14108	14254	29040	29040					-0.0075988102896644705
TYFFTAVLI	9	Unmodified	_TYFFTAVLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7973022460938	2	537.797143	1073.57973	0.59016	0.00031739	-0.31741	-0.0001707	0.27276	0.00014669	537.7969109499852	97.377	0.28179	97.377	97.156	97.438	0					33	11	4	0	0	0	0.0012363	1	24742	24742		120.45	64.273	1	894720			21354	439	14109	14255	29041	29041					0.04588699251212347
TYFFTAVLI	9	Unmodified	_TYFFTAVLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7973022460938	2	537.797143	1073.57973	0.63332	0.0003406	-0.34224	-0.00018406	0.29107	0.00015654	537.7969861152416	97.556	1.3999	97.556	97.461	98.861	0					155	73	3	0	0	0	0.0012363	6	24781	24781;24824;24862;24894;24909;24978		120.45	64.273	1	688660			21355	439	14109	14255	29042;29043;29044;29045;29046;29047	29042					0.04588699251212347
TYFISFFLF	9	Unmodified	_TYFISFFLF_					0	0	0		ENST00000483357.1_1_4:123257324-123258205:+|nuORF	ENST00000483357.1_1_4:123257324-123258205:+|nuORF	ENST00000483357.1_1_4:123257324-123258205:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2310180664062	2	592.804968	1183.59538	0.18859	0.0001118	0.8234	0.00048811	1.012	0.00059991	592.8057044853999	56.329	0.15538	56.396	56.306	56.461	0.066448					6	4	2	0	0	0	0.25174	1	12106	12106		7.2892	0.56607	1	76558			21356	6768	14110	14256	29048	29048					0.010929857682413058
TYFPEYTIL	9	Unmodified	_TYFPEYTIL_					0	0	0			REV__nc|ENSG00000099204|O14639-4|ABLIM1	REV__nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.286865234375	2	573.789515	1145.56448	0.26978	0.0001548	-1.0998	-0.00063103	-0.82998	-0.00047623	573.788418013478	77.757	0.32895	77.757	77.685	78.013	0					13	10	2	0	0	0	0.25504	1	18807	18807		4.756	0.42677	1	65588	+		21357	8353	14111	14257	29049	29049					-0.002482123366689848
TYFPTWEGLF	10	Unmodified	_TYFPTWEGLF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF;ENST00000572445.1_1_17:1564285-1564453:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.80078125	2	630.800414	1259.58628	0.43859	0.00027666	0.10334	6.5185E-05	0.54192	0.00034184	630.8002867874308	97.959	1.1428	97.959	97.661	98.804	0					106	61	3	0	0	0	4.5448E-05	2	24921	24878;24921		114.65	90.628	1	594280			21358	4573	14112	14258	29050;29051	29051					-0.03313407588098016
TYFPTWEGLF	10	Unmodified	_TYFPTWEGLF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF;ENST00000572445.1_1_17:1564285-1564453:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.8006591796875	2	630.800414	1259.58628	0.5599	0.00035319	0.22046	0.00013907	0.78036	0.00049225	630.8003378787623	97.864	0.67038	97.905	97.697	98.367	0.040855					85	33	3	0	0	0	4.5448E-05	3	24764	24719;24764;24803		114.65	85.567	1	589650			21359	4573	14112	14258	29052;29053;29054	29053					-0.03313407588098016
TYFRFQEEI	9	Unmodified	_TYFRFQEEI_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.8009643554688	2	616.800946	1231.58734	-0.11307	-6.9744E-05	0.40227	0.00024812	0.28919	0.00017837	616.8010380714621	60.76	1.0423	60.76	60.483	61.525	0					138	39	5	0	0	0	1.6001E-05	6	13566	13566;13617;13668;13708;13778;13789		143.21	95.619	1	2532400			21360	2164	14113	14259	29055;29056;29057;29058;29059;29060	29055					-0.019191932191688466
TYFRFQEEI	9	Unmodified	_TYFRFQEEI_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.8010864257812	2	616.800946	1231.58734	-0.22848	-0.00014093	0.48964	0.00030201	0.26117	0.00016109	616.8011121043695	60.633	1.0369	60.706	60.462	61.499	0.073421					119	37	4	0	0	0	1.9628E-05	3	13405	13405;13456;13570		139.78	92.187	1	2334700			21361	2164	14113	14259	29061;29062;29063	29061					-0.019191932191688466
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7947998046875	2	527.794601	1053.57465	0.28116	0.00014839	0.38	0.00020056	0.66115	0.00034895	527.7946594396517	88.859	1.0536	88.859	88.663	89.716	0					109	41	4	0	0	0	0.0042542	2	22183	22183;22228		100.37	42.9	1	1045900			21362	3296	14114	14260	29064;29065	29064					0.05000395388583456
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7946166992188	2	527.794601	1053.57465	0.267	0.00014092	0.28484	0.00015034	0.55184	0.00029126	527.7946438351789	88.849	0.98185	88.881	88.621	89.603	0.032265					104	38	4	0	0	0	0.0042542	3	21967	21967;22015;22063		100.37	52.026	1	1025700			21363	3296	14114	14260	29066;29067;29068	29066					0.05000395388583456
TYGDAGLTYTF	11	Unmodified	_TYGDAGLTYTF_					0	0	0		ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7781982421875	2	604.777136	1207.53972	0.57793	0.00034952	1.5676	0.00094808	2.1456	0.0012976	604.7780731154727	71.494	0.51407	71.494	71.297	71.811	0					40	17	3	0	0	0	6.3612E-05	1	16854	16854		152.89	130.15	1	428240			21364	5186	14115	14261	29069	29069					-0.05574892210051985
TYGDAGLTYTF	11	Unmodified	_TYGDAGLTYTF_					0	0	0		ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7794799804688	2	604.777136	1207.53972	0.64116	0.00038776	1.6776	0.0010146	2.3188	0.0014023	604.7780898003122	71.434	0.47461	71.493	71.288	71.763	0.058578					34	16	3	0	0	0	0.015471	2	16675	16675;16688		114.2	97.089	1	447150			21365	5186	14115	14261	29070;29071	29070					-0.05574892210051985
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.27978515625	2	567.279315	1132.54408	0.42521	0.00024121	-0.29725	-0.00016863	0.12796	7.2588E-05	567.2793992162383	63.047	8.5501	63.047	62.631	71.181	0					767	315	5	0	0	0	8.8922E-09	17	14342	14261;14299;14342;14385;14433;14478;14521;14568;14608;14658;14701;14743;14787;14844;15051;15281;16060		160.69	86.49	1	49290000			21366	3458	14116	14262	29072;29073;29074;29075;29076;29077;29078;29079;29080;29081;29082;29083;29084;29085;29086;29087;29088	29074					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2796630859375	2	567.279315	1132.54408	0.37152	0.00021075	-0.1677	-9.5134E-05	0.20382	0.00011562	567.27943925011	62.977	4.7916	63.05	62.687	67.479	0.072701					557	181	5	0	0	0	1.8205E-09	18	14095	14095;14142;14182;14226;14270;14313;14360;14404;14455;14500;14543;14582;14629;14693;14732;14812;14910;15127		173.69	88.414	1	39302000			21367	3458	14116	14262	29089;29090;29091;29092;29093;29094;29095;29096;29097;29098;29099;29100;29101;29102;29103;29104;29105;29106	29089					-0.016893829964601537
TYGFTSYLF	9	Unmodified	_TYGFTSYLF_					0	0	0			REV__nc|ENSG00000103642|P83111-2|LACTB	REV__nc|ENSG00000103642|P83111-2|LACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.761962890625	2	549.760758	1097.50696	0.52283	0.00028743	-1.4431	-0.00079336	-0.92027	-0.00050593	549.7603676591651	87.789	0.33514	87.789	87.547	87.883	0					12	11	2	0	0	0	0.21398	1	21825	21825		16.942	3.8998	1	100320	+		21368	8486	14117	14263	29107	29107					-0.037890545422669675
TYGFTSYLF	9	Unmodified	_TYGFTSYLF_					0	0	0			REV__nc|ENSG00000103642|P83111-2|LACTB	REV__nc|ENSG00000103642|P83111-2|LACTB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2963256835938	2	549.760758	1097.50696	0.35622	0.00019583	-1.1472	-0.00063068	-0.79097	-0.00043484	549.7600486708214	87.603	0.26877	87.633	87.582	87.851	0.030037					12	9	2	0	0	0	0.2298	1	21626	21626		16.942	4.4107	1	67177	+		21369	8486	14117	14263	29108	29108					-0.037890545422669675
TYGFTSYLF	9	Unmodified	_TYGFTSYLF_					0	0	0			REV__nc|ENSG00000103642|P83111-2|LACTB	REV__nc|ENSG00000103642|P83111-2|LACTB	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	549.760758	1097.50696	0.52283	0.00028743	-1.4431	-0.00079336	-0.92027	-0.00050593	549.7603676591651	87.789	0.33514	87.789	87.547	87.883	0	0.077701	-0.00020274	NaN	16.942	12	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100320	+		21370	8486	14117	14263							-0.037890545422669675
TYGLGDRKD	9	Unmodified	_TYGLGDRKD_					0	0	0		ENST00000570299.5_1_17:44039703-44096001:+|nuORF;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT	ENST00000570299.5_1_17:44039703-44096001:+|nuORF	ENST00000570299.5_1_17:44039703-44096001:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.241455078125	2	512.756538	1023.49852	-0.093659	-4.8024E-05	0.29922	0.00015343	0.20556	0.0001054	512.7567819527293	27.144	0.29836	27.231	27.094	27.393	0.0867					33	21	2	0	0	0	0.28472	1	3350	3350		8.7454	0.58988	1	32434			21371	5098	14118	14264	29109	29109					-0.012286084588595259
TYGLGDRKD	9	Unmodified	_TYGLGDRKD_					0	0	0		ENST00000570299.5_1_17:44039703-44096001:+|nuORF;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT	ENST00000570299.5_1_17:44039703-44096001:+|nuORF	ENST00000570299.5_1_17:44039703-44096001:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	512.756538	1023.49852	-0.13772	-7.0617E-05	0.43523	0.00022317	0.29751	0.00015255	512.7567918054418	27.274	0.29074	27.274	27.139	27.429	0	0.021604	9.8559E-05	NaN	8.7454	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18865			21372	5098	14118	14264							-0.012286084588595259
TYGLGDRKD	9	Unmodified	_TYGLGDRKD_					0	0	0		ENST00000570299.5_1_17:44039703-44096001:+|nuORF;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT	ENST00000570299.5_1_17:44039703-44096001:+|nuORF	ENST00000570299.5_1_17:44039703-44096001:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.756538	1023.49852	-0.093659	-4.8024E-05	0.29922	0.00015343	0.20556	0.0001054	512.7567819527293	27.144	0.29836	27.231	27.094	27.393	0.0867	-0.021604	-4.0925E-05	NaN	8.7454	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32434			21373	5098	14118	14264							-0.012286084588595259
TYGPLKKRW	9	Unmodified	_TYGPLKKRW_					0	0	0			REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2687377929688	2	574.832383	1147.65021	0.48113	0.00027657	-1.7305	-0.00099476	-1.2494	-0.00071819	574.8310688114253	63.68	0.25833	63.68	63.504	63.762	0					11	8	2	0	0	0	0.25504	1	14437	14437		4.756	0.81161	1	79868	+		21374	8634	14119	14265	29110	29110					0.08229417359507352
TYGPSFPAF	9	Unmodified	_TYGPSFPAF_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7346496582031	2	493.734543	985.454533	0.51993	0.00025671	-0.17256	-8.52E-05	0.34737	0.00017151	493.7343697312848	75.402	0.42686	75.402	75.225	75.652	0					35	16	3	0	0	0	0.0053304	2	18050	18050;18100		81.613	49.496	1	336420			21375	4396	14120	14266	29111;29112	29111					-0.03877592885191916
TYGPSFPAF	9	Unmodified	_TYGPSFPAF_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7348327636719	2	493.734543	985.454533	0.44478	0.0002196	-0.1664	-8.2156E-05	0.27838	0.00013745	493.7344671871828	75.355	0.46906	75.399	75.235	75.704	0.044037					31	16	3	0	0	0	0.030375	1	17926	17926		50.855	32.72	1	457020			21376	4396	14120	14266	29113	29113					-0.03877592885191916
TYGRKKNV	8	Unmodified	_TYGRKKNV_					0	0	0			REV__tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1	REV__tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2787780761719	2	483.279983	964.545414	-0.15273	-7.3809E-05	-1.9443	-0.00093966	-2.0971	-0.0010135	483.27896462319256	89.973	0.51443	90.008	89.726	90.24	0.034065					26	20	2	0	0	0	0.53817	1	22290	22290		2.5775	0	1	364580	+		21377	13115	14121	14267	29114	29114					0.06172295882936396
TYHGSSITI	9	Unmodified	_TYHGSSITI_					0	0	0			REV__ENSG00000162607|ENST00000339950|USP1	REV__ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.747802734375	2	489.748182	977.481811	-0.16773	-8.2147E-05	-0.98532	-0.00048256	-1.1531	-0.00056471	489.74801549136123	32.761	0.76385	32.761	32.614	33.378	0					54	32	2	0	0	0	0.22344	1	5104	5104		15.847	0	1	64805	+		21378	9893	14122	14268	29115	29115					-0.007831093448203319
TYHPEFPLGTF	11	Unmodified	_TYHPEFPLGTF_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6;nc|ENSG00000206384|A6NMZ7-2|COL6A6;COL6A6|p.R1810Sfs*88|1|0.35|ENSG00000206384|chr3:130649258-130649258|G/-|frameshift_variant	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.879638671875	3	436.880156	1307.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.631	1	80.631	80.131	81.131	0								0	0	0	0.33867	1	19656	19656		1.2148	0.70888	1				21379	5530	14123	14269	29116	29116					-0.02286620185122956
TYHPGVPVF	9	Unmodified	_TYHPGVPVF_					0	0	0		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1;ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7642517089844	2	508.763635	1015.51272	0.55213	0.0002809	0.15451	7.8608E-05	0.70664	0.00035951	508.7637587572336	54.623	0.46267	54.623	54.553	55.015	0					28	19	2	0	0	0	0.16036	1	11734	11734		23.148	10.617	1	141980			21380	1658	14124	14270	29117	29117					0.0055808876010132735
TYIANYYTF	9	Unmodified	_TYIANYYTF_					0	0	0			REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2709350585938	2	578.27149	1154.52843	0.50663	0.00029297	-1.9391	-0.0011213	-1.4325	-0.00082838	578.2703247105858	63.03	0.81246	63.03	62.837	63.649	0					48	30	2	0	0	0	0.14444	2	14290	14290;14357		24.991	3.4793	1	385820	+		21381	13198	14125	14271	29118;29119	29118					-0.042656695135292466
TYIDFVPY	8	Unmodified	_TYIDFVPY_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.76080322265625	2	509.250026	1016.4855	0.11828	6.0234E-05	-0.4264	-0.00021714	-0.30812	-0.00015691	509.2498421861014	72.45	0.45534	72.506	72.321	72.776	0.055939					26	15	2	0	0	0	0.35759	1	16997	16997		12.532	3.1841	1	83226			21382	2640	14126	14272	29120	29120					-0.022084395709498494
TYIESASEL	9	Unmodified	_TYIESASEL_					0	0	0		ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14	ENST00000486564.5_1_2:31133891-31178528:-|nuORF	ENST00000486564.5_1_2:31133891-31178528:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.73602294921875	2	506.745305	1011.47606	0.42082	0.00021325	0.35086	0.0001778	0.77167	0.00039104	506.7454322176011	55.472	0.53976	55.472	55.243	55.782	0					28	18	2	0	0	0	0.031665	2	11980	11980;12040		49.933	28.186	1	141780			21383	3677	14127	14273	29121;29122	29121					-0.029222526471244237
TYIESASEL	9	Unmodified	_TYIESASEL_					0	0	0		ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14	ENST00000486564.5_1_2:31133891-31178528:-|nuORF	ENST00000486564.5_1_2:31133891-31178528:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7362976074219	2	506.745305	1011.47606	0.36894	0.00018696	0.45235	0.00022923	0.82129	0.00041619	506.7454553015618	55.454	0.50657	55.52	55.335	55.841	0.065128					30	18	2	0	0	0	0.0074933	3	11825	11825;11850;11870		74.929	40.827	1	120040			21384	3677	14127	14273	29123;29124;29125	29123					-0.029222526471244237
TYIGLILVAW	10	Unmodified	_TYIGLILVAW_					0	0	0		RRH|p.G147V|1|0.22|ENSG00000180245|chr4:109836049-109836049|G/T|missense_variant	RRH|p.G147V|1|0.22|ENSG00000180245|chr4:109836049-109836049|G/T|missense_variant	RRH|p.G147V|1|0.22|ENSG00000180245|chr4:109836049-109836049|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2688598632812	2	574.839342	1147.66413	0.40317	0.00023176	-3.4634	-0.0019909	-3.0603	-0.0017592	574.8376754769993	63.18	0.063332	63.253	63.227	63.29	0.072701					4	2	2	0	0	0	0.31794	1	14197	14197		3.5965	0.60125	1	40550			21385	13354	14128	14274	29126	29126					0.0962065006795001
TYIHWMKKF	9	Unmodified	_TYIHWMKKF_					0	0	0			REV__ENST00000356189.5_1_10:15120101-15120344:-|nuORF	REV__ENST00000356189.5_1_10:15120101-15120344:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.2311096191406	3	418.554838	1252.64269	0.050819	2.1271E-05	-3.4583	-0.0014475	-3.4075	-0.0014262	418.55355169665205	49.867	0.40821	49.94	49.717	50.125	0.07312					23	14	2	0	0	0	0.25851	1	10137	10137		2.4985	0.41248	1	45199	+		21386	11503	14129	14275	29127	29127					0.026469417675571094
TYIHWNLCL	9	Unmodified	_TYIHWNLCL_					0	0	0			REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense	REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7911376953125	2	581.789327	1161.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.975	1	74.975	74.475	75.475	0								0	0	0	0.23452	1	17925	17925		12.532	2.4576	1		+		21387	12702	14130	14276	29128	29128					-0.010219105375199433
TYIHWNLCL	9	Unmodified	_TYIHWNLCL_					0	0	0			REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense	REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7922973632812	2	581.789327	1161.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.034	1	75.034	74.534	75.534	0								0	0	0	0.23452	1	17943	17943		12.532	4.376	1		+		21388	12702	14130	14276	29129	29129					-0.010219105375199433
TYIIDLLTF	9	Unmodified	_TYIIDLLTF_					0	0	0		ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1;GFOD1|p.V176M|1|0.65|ENSG00000145990|chr6:13365390-13365390|C/T|missense_variant	ENSG00000145990|ENST00000379287|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8071899414062	2	549.807708	1097.60086	0.223	0.00012261	-1.286	-0.00070704	-1.063	-0.00058444	549.8068515090756	104.2	0.37692	104.2	104.03	104.41	0					52	36	2	0	0	0	0.0569	2	26827	26785;26827		41.84	19.103	1	91532			21389	3271	14131	14277	29130;29131	29131					0.05596664560039244
TYIIDLLTF	9	Unmodified	_TYIIDLLTF_					0	0	0		ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1;GFOD1|p.V176M|1|0.65|ENSG00000145990|chr6:13365390-13365390|C/T|missense_variant	ENSG00000145990|ENST00000379287|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8156127929688	2	549.807708	1097.60086	0.46868	0.00025769	-1.1772	-0.00064722	-0.70849	-0.00038953	549.8069302389802	104.18	0.34386	104.22	104.06	104.4	0.037903					44	33	2	0	0	0	0.03472	1	26594	26594		47.749	25.012	1	116560			21390	3271	14131	14277	29132	29132					0.05596664560039244
TYIIDLLTF	9	Unmodified	_TYIIDLLTF_					0	0	0		ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1;GFOD1|p.V176M|1|0.65|ENSG00000145990|chr6:13365390-13365390|C/T|missense_variant	ENSG00000145990|ENST00000379287|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8069458007812	2	549.807708	1097.60086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.33	1	104.36	103.86	104.86	0.034004								0	0	0	0.24643	1	26669	26669		10.074	3.3508	1				21391	3271	14131	14277	29133	29133					0.05596664560039244
TYIIFNSKRN	10	Unmodified	_TYIIFNSKRN_					0	0	0			REV__tr|U7SRQ6|U7SRQ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01628PE=4SV=1	REV__tr|U7SRQ6|U7SRQ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01628PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.2311096191406	3	419.2313	1254.67207	0.033733	1.4142E-05	0.20277	8.5007E-05	0.2365	9.9149E-05	419.2312558696808	49.686	0.50368	49.759	49.594	50.097	0.07312					43	17	4	0	0	0	0.44024	1	10137	10137		6.6235	0	1	210490	+		21392	13137	14132	14278	29134	29134					0.05492177317432834
TYIKFINLF	9	Unmodified	_TYIKFINLF_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.83203125	2	579.831517	1157.64848	0.91017	0.00052774	0.13123	7.609E-05	1.0414	0.00060383	579.8314825087019	80.371	1.7846	80.371	80.169	81.954	0					161	61	4	0	0	0	0.0040167	5	19560	19560;19609;19658;19701;19877		103.42	51.79	1	1703500			21393	5260	14133	14279	29135;29136;29137;29138;29139	29135					0.0759636355087423
TYIKFINLF	9	Unmodified	_TYIKFINLF_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.8321533203125	2	579.831517	1157.64848	0.81201	0.00047083	0.1534	8.8943E-05	0.96541	0.00055977	579.8315292384432	80.37	1.4898	80.394	80.188	81.678	0.023605					133	53	4	0	0	0	0.0022565	5	19437	19389;19437;19485;19537;19699		114.2	54.128	1	1451400			21394	5260	14133	14279	29140;29141;29142;29143;29144	29141					0.0759636355087423
TYIKFVNLF	9	Unmodified	_TYIKFVNLF_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.325439453125	2	572.823692	1143.63283	0.31358	0.00017963	0.26687	0.00015287	0.58045	0.00033249	572.8238900528404	76.608	0.67101	76.608	76.415	77.086	0					52	23	3	0	0	0	0.13341	1	18543	18543		26.268	12.362	1	315900			21395	4899	14134	14280	29145	29145					0.0667607703385329
TYIKFVNLF	9	Unmodified	_TYIKFVNLF_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.823692	1143.63283	0.36127	0.00020694	0.10517	6.0241E-05	0.46643	0.00026718	572.8234450986978	76.597	0.6507	76.637	76.441	77.092	0.03923	0.014552	-0.0001345	NaN	26.268	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247640			21396	4899	14134	14280							0.0667607703385329
TYILPNFFS	9	Unmodified	_TYILPNFFS_					0	0	0			REV__ENSG00000157219|ENST00000287907|HTR5A	REV__ENSG00000157219|ENST00000287907|HTR5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2847290039062	2	551.2844	1100.55425	0.61549	0.00033931	-0.60488	-0.00033346	0.010611	5.8499E-06	551.283902951345	93.55	0.67208	93.55	93.268	93.941	0					51	27	3	0	0	0	0.22083	1	23661	23661		16.149	1.3108	1	258160	+		21397	9774	14135	14281	29146	29146					0.007992247287575083
TYILPNFFS	9	Unmodified	_TYILPNFFS_					0	0	0			REV__ENSG00000157219|ENST00000287907|HTR5A	REV__ENSG00000157219|ENST00000287907|HTR5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2843017578125	2	551.2844	1100.55425	0.61549	0.00033931	-0.60488	-0.00033346	0.010611	5.8499E-06	551.283902951345	93.55	0.67208	93.55	93.268	93.941	0					51	27	3	0	0	0	0.21622	1	23570	23570		21.537	3.402	1	258160	+		21398	9774	14135	14281	29147	29147					0.007992247287575083
TYINPFVSF	9	Unmodified	_TYINPFVSF_					0	0	0		nc|ENSG00000113615|O95486-2|SEC24A;ENSG00000113615|ENST00000398844|SEC24A;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	nc|ENSG00000113615|O95486-2|SEC24A;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant	nc|ENSG00000113615|O95486-2|SEC24A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2769165039062	2	544.276575	1086.5386	0.33517	0.00018243	0.45611	0.00024825	0.79128	0.00043067	544.2766934829568	87.34	0.87922	87.34	87.069	87.948	0					104	32	4	0	0	0	0.0046695	2	21738	21738;21786		84.522	34.976	1	1230600			21399	1810;2941	14136	14282	29148;29149	29148					-0.0012106178828616976
TYINPFVSF	9	Unmodified	_TYINPFVSF_					0	0	0		nc|ENSG00000113615|O95486-2|SEC24A;ENSG00000113615|ENST00000398844|SEC24A;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	nc|ENSG00000113615|O95486-2|SEC24A;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant	nc|ENSG00000113615|O95486-2|SEC24A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2764892578125	2	544.276575	1086.5386	0.50244	0.00027347	-0.055429	-3.0168E-05	0.44701	0.0002433	544.2764873714867	88.109	1.0169	88.109	87.855	88.872	0					93	39	4	0	0	0	0.11816	1	21885	21885		28.495	5.7582	1	1145600			21400	1810;2941	14136	14282	29150	29150					-0.0012106178828616976
TYINPFVSF	9	Unmodified	_TYINPFVSF_					0	0	0		nc|ENSG00000113615|O95486-2|SEC24A;ENSG00000113615|ENST00000398844|SEC24A;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	nc|ENSG00000113615|O95486-2|SEC24A;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant	nc|ENSG00000113615|O95486-2|SEC24A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2769165039062	2	544.276575	1086.5386	0.23787	0.00012946	0.55795	0.00030368	0.79581	0.00043314	544.2767331449007	87.294	0.85941	87.322	87.044	87.903	0.027573					106	33	4	0	0	0	0.0044228	2	21568	21524;21568		93.938	40.105	1	1080700			21401	1810;2941	14136	14282	29151;29152	29152					-0.0012106178828616976
TYIPGTQITF	10	Unmodified	_TYIPGTQITF_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.3363647460938	2	570.800414	1139.58628	0.4292	0.00024499	1.0876	0.00062078	1.5167	0.00086576	571.3043110828746	77.894	0.58785	77.928	77.587	78.175	0.034485					29	19	2	0	0	0	0.31219	1	18675	18675		17.113	4.5813	1	135080			21402	3040	14137	14283	29153	29153					0.022065924119033298
TYIPPLLVAF	10	Unmodified	_TYIPPLLVAF_					0	0	0		ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF;ENSG00000205084|ENST00000258173|TMEM231	ENST00000561809.1_1_16:75589903-75590146:-|nuORF	ENST00000561809.1_1_16:75589903-75590146:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3339233398438	2	567.333893	1132.65323	0.30157	0.00017109	0.01993	1.1307E-05	0.3215	0.0001824	567.3338464463386	101.17	1.1477	101.17	100.82	101.96	0					187	75	4	0	0	0	0.06954	7	25967	25843;25881;25926;25967;25998;26018;26032		52.268	31.815	1	476850			21403	5506	14138	14284	29154;29155;29156;29157;29158;29159;29160	29157					0.09221247693653822
TYIPPLLVAF	10	Unmodified	_TYIPPLLVAF_					0	0	0		ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF;ENSG00000205084|ENST00000258173|TMEM231	ENST00000561809.1_1_16:75589903-75590146:-|nuORF	ENST00000561809.1_1_16:75589903-75590146:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3340454101562	2	567.333893	1132.65323	0.41489	0.00023538	-0.082928	-4.7048E-05	0.33196	0.00018833	567.3337499479986	101.08	1.1624	101.12	100.85	102.02	0.042839					177	83	4	0	0	0	0.078033	5	25712	25672;25712;25757;25803;25845		49.933	29.02	1	405890			21404	5506	14138	14284	29161;29162;29163;29164;29165	29162					0.09221247693653822
TYIQDAFQL	9	Unmodified	_TYIQDAFQL_					0	0	0		ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7769165039062	2	549.776939	1097.53933	0.38115	0.00020955	0.58708	0.00032276	0.96823	0.00053231	549.7769798031021	77.299	0.14935	77.299	77.28	77.429	0					13	9	2	0	0	0	0.037699	1	18651	18651		46.022	21.031	1	409080			21405	5317	14139	14285	29166	29166					-0.005542671392504417
TYIQDAFQL	9	Unmodified	_TYIQDAFQL_					0	0	0		ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7769165039062	2	549.776939	1097.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.309	1	77.343	76.843	77.843	0.034485								0	0	0	0.037949	1	18485	18485		53.317	27.049	1				21406	5317	14139	14285	29167	29167					-0.005542671392504417
TYIQDAFQL	9	Unmodified	_TYIQDAFQL_					0	0	0		ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.776939	1097.53933	0.52709	0.00028978	-1.5315	-0.00084199	-1.0044	-0.00055221	549.7756730940001	77.435	0.1203	77.47	77.369	77.489	0.034485	0.085259	-0.0021721	NaN	46.022	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105620			21407	5317	14139	14285							-0.005542671392504417
TYIQILESF	9	Unmodified	_TYIQILESF_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;ENSG00000187790|ENST00000267430|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2954711914062	2	557.294965	1112.57538	0.42927	0.00023923	0.46962	0.00026172	0.89888	0.00050094	557.295081276444	90.498	1.5074	90.498	90.256	91.763	0					154	55	5	0	0	0	8.8922E-09	2	22675	22675;22772		160.69	91.585	1	2569900			21408	5133	14140	14286	29168;29169	29168					0.023591900376231933
TYIQILESF	9	Unmodified	_TYIQILESF_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;ENSG00000187790|ENST00000267430|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2957153320312	2	557.294965	1112.57538	0.24783	0.00013811	0.67916	0.00037849	0.92698	0.0005166	557.2951363542678	90.537	1.6217	90.571	90.263	91.884	0.034065					164	61	4	0	0	0	8.8922E-09	1	22502	22502		160.69	82.54	1	2002000			21409	5133	14140	14286	29170	29170					0.023591900376231933
TYIRRYILK	9	Unmodified	_TYIRRYILK_					0	0	0		nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6	nc|ENSG00000112414|Q86SQ4-4|ADGRG6	nc|ENSG00000112414|Q86SQ4-4|ADGRG6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.7533569335938	2	613.374415	1224.73428	-0.23513	-0.00014422	-0.43325	-0.00026574	-0.66838	-0.00040997	613.3742740713268	72.949	0.30946	72.949	72.775	73.084	0					13	10	2	0	0	0	0.25845	1	17321	17321		2.0598	0.40713	1	95294			21410	1759	14141	14287	29171	29171					0.13089948456399725
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.2312927246094	3	419.2313	1254.67207	0.37519	0.00015729	-0.36336	-0.00015233	0.011829	4.959E-06	419.23104281088445	49.766	0.87287	49.766	49.562	50.435	0					56	30	3	0	0	0	0.43806	1	10267	10267		7.0371	1.5138	1	197900			21411	3816	14142	14288	29172	29172					0.05492177317387359
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	419.2313	1254.67207	0.033733	1.4142E-05	0.20277	8.5007E-05	0.2365	9.9149E-05	419.2312558696808	49.686	0.50368	49.759	49.594	50.097	0.07312	-0.0031552	0.0003686	NaN	7.0371	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210490			21412	3816	14142	14288							0.05492177317387359
TYISFPLEL	9	Unmodified	_TYISFPLEL_					0	0	0		ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7922973632812	2	541.792058	1081.56956	0.60494	0.00032775	-2.42	-0.0013112	-1.8151	-0.00098341	541.7902827465851	93.215	0.89079	93.215	92.767	93.658	0					69	34	3	0	0	0	0.01063	1	23489	23489		65.235	36.748	1	231650			21413	5743	14143	14289	29173	29173					0.03204091525935837
TYISFPLEL	9	Unmodified	_TYISFPLEL_					0	0	0		ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7921142578125	2	541.792058	1081.56956	0.61141	0.00033126	-1.2818	-0.00069448	-0.67041	-0.00036322	541.7913172617813	93.163	0.82786	93.2	92.808	93.635	0.037369					74	34	3	0	0	0	0.0052407	1	23305	23305		81.89	47.788	1	295380			21414	5743	14143	14289	29174	29174					0.03204091525935837
TYISWKEEL	9	Unmodified	_TYISWKEEL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7979125976562	2	584.797872	1167.58119	0.12485	7.301E-05	0.4285	0.00025059	0.55335	0.0003236	584.7979995464037	58.701	1.0077	58.701	58.445	59.453	0					87	36	4	0	0	0	0.0045978	3	12944	12944;12992;13036		87.258	52.326	1	779470			21415	2415	14144	14290	29175;29176;29177	29175					0.004102885493011854
TYISWKEEL	9	Unmodified	_TYISWKEEL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7980346679688	2	584.797872	1167.58119	0.54062	0.00031616	-0.016041	-9.3806E-06	0.52458	0.00030677	584.7976960240895	58.595	1.0376	58.665	58.387	59.425	0.070477					83	38	4	0	0	0	0.0046221	4	12817	12774;12817;12870;12880		86.332	49.826	1	591890			21416	2415	14144	14290	29178;29179;29180;29181	29179					0.004102885493011854
TYITDAYYNI	10	Unmodified	_TYITDAYYNI_					0	0	0			REV__ENSG00000197241|ENST00000400906|SLC2A7	REV__ENSG00000197241|ENST00000400906|SLC2A7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.791259765625	2	618.792786	1235.57102	0.29913	0.0001851	0.38622	0.00023899	0.68535	0.00042409	618.7925447600811	66.586	0.73866	66.586	66.387	67.126	0					59	28	3	0	0	0	0.40359	1	15450	15450		11.495	0.67078	1	361950	+		21417	10848	14145	14291	29182	29182					-0.037343191759418914
TYITNQAAVYF	11	Unmodified	_TYITNQAAVYF_					0	0	0		ENST00000394563.4_1_X:85340081-85340624:-|nuORF;nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.3236694335938	2	645.821878	1289.6292	-0.056913	-3.6756E-05	0.70426	0.00045483	0.64735	0.00041807	646.3236825675091	72.188	0.47954	72.188	72.019	72.499	0					24	15	2	0	0	0	0.2497	1	17087	17087		23.801	11.56	1	172090			21418	6328	14146	14292	29183	29183					-0.004026375306921182
TYITNQAAVYF	11	Unmodified	_TYITNQAAVYF_					0	0	0		ENST00000394563.4_1_X:85340081-85340624:-|nuORF;nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.8226318359375	2	645.821878	1289.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.194	1	72.25	71.75	72.75	0.055939								0	0	0	0.25329	1	16921	16921		20.415	3.3016	1				21419	6328	14146	14292	29184	29184					-0.004026375306921182
TYKAFNTFI	9	Unmodified	_TYKAFNTFI_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3162231445312	2	552.78985	1103.56515	0.56392	0.00031173	0.25714	0.00014215	0.82106	0.00045387	552.7899562748165	59.976	0.88513	59.976	59.784	60.669	0					56	31	3	0	0	0	0.12868	1	13340	13340		42.312	15.429	1	199070			21420	575	14147	14293	29185	29185					0.01750627103047009
TYKAFNTFI	9	Unmodified	_TYKAFNTFI_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3163452148438	2	552.78985	1103.56515	0.37039	0.00020475	0.21924	0.0001212	0.58963	0.00032594	552.7897605829231	59.855	0.82151	59.928	59.756	60.577	0.072338					51	29	3	0	0	0	0.16146	1	13170	13170		35.612	15.159	1	149870			21421	575	14147	14293	29186	29186					0.01750627103047009
TYKDYVDLF	9	Unmodified	_TYKDYVDLF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2844848632812	2	582.284597	1162.55464	0.77678	0.00045231	0.19855	0.00011561	0.97533	0.00056792	582.2846157611121	67.079	0.52511	67.079	66.807	67.332	0					54	18	4	0	0	0	0.0047429	3	15494	15466;15494;15543		83.429	45.455	1	1011300			21422	5692	14148	14294	29187;29188;29189	29188					-0.02013400342048044
TYKDYVDLF	9	Unmodified	_TYKDYVDLF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2847290039062	2	582.284597	1162.55464	0.95686	0.00055716	0.16158	9.4083E-05	1.1184	0.00065125	582.2846720318886	67.071	0.47696	67.136	66.871	67.348	0.065071					48	16	4	0	0	0	0.0042703	3	15329	15329;15336;15378		99.755	53.734	1	947260			21423	5692	14148	14294	29190;29191;29192	29190					-0.02013400342048044
TYKEQYAF	8	Unmodified	_TYKEQYAF_					0	0	0		ENSG00000163687|ENST00000394549|DNASE1L3	ENSG00000163687|ENST00000394549|DNASE1L3	ENSG00000163687|ENST00000394549|DNASE1L3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2877807617188	2	525.250557	1048.48656	-0.0043799	-2.3005E-06	-0.62814	-0.00032993	-0.63252	-0.00033223	525.2498680154195	73.089	0.26555	73.089	72.909	73.174	0					11	8	2	0	0	0	0.35759	1	17348	17348		11.64	0	1	64549			21424	3936	14149	14295	29193	29193					-0.03574225202055459
TYKNFFYLI	9	Unmodified	_TYKNFFYLI_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8211059570312	2	604.82115	1207.62775	0.5443	0.0003292	1.0191	0.00061637	1.5634	0.00094558	604.8211880816394	77.529	1.1586	77.529	77.32	78.479	0					87	42	3	0	0	0	0.015341	3	18686	18686;18733;18782		61.602	38.866	1	882890			21425	431	14150	14296	29194;29195;29196	29194					0.032237731712484674
TYKNFFYLI	9	Unmodified	_TYKNFFYLI_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.8212890625	2	604.82115	1207.62775	0.7566	0.0004576	0.59237	0.00035828	1.349	0.00081589	604.8209914760569	77.515	1.1674	77.549	77.342	78.509	0.034485					83	41	3	0	0	0	0.0089808	2	18570	18517;18570		70.332	44.064	1	709620			21426	431	14150	14296	29197;29198	29198					0.032237731712484674
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7850341796875	2	550.784764	1099.55498	0.27255	0.00015012	0.2716	0.0001496	0.54415	0.00029971	550.7848443628214	48.688	1.5392	48.688	48.311	49.85	0					79	53	2	0	0	0	7.0995E-07	1	9946	9946		132.13	64.054	1	624710			21427	1827	14151	14297	29199	29199					0.009180193778092871
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7849731445312	2	550.784764	1099.55498	0.31043	0.00017098	0.38241	0.00021063	0.69284	0.00038161	550.7849179729052	48.577	1.1835	48.657	48.248	49.432	0.080029					79	41	2	0	0	0	0.0011203	1	9789	9789		121.5	71.57	1	452060			21428	1827	14151	14297	29200	29200					0.009180193778092871
TYLATIHLSYL	11	Unmodified	_TYLATIHLSYL_					0	0	0		TAPBP|p.P276S|1|0.43|ENSG00000231925|chr6:33305031-33305031|G/A|missense_variant	TAPBP|p.P276S|1|0.43|ENSG00000231925|chr6:33305031-33305031|G/A|missense_variant	TAPBP|p.P276S|1|0.43|ENSG00000231925|chr6:33305031-33305031|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.8558959960938	2	647.855721	1293.69689	0.69509	0.00045032	-0.45707	-0.00029612	0.23802	0.0001542	647.8554340161687	81.871	0.3203	81.871	81.716	82.036	0					19	10	2	0	0	0	0.39569	1	20070	20070		5.2969	0.39987	1	112930			21429	13424	14152	14298	29201	29201					0.061788124001623146
TYLDIFRDF	9	Unmodified	_TYLDIFRDF_					0	0	0		ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.29833984375	2	595.298039	1188.58152	0.57608	0.00034294	0.23825	0.00014183	0.81432	0.00048476	595.2981181316784	83.949	0.63467	83.949	83.608	84.242	0					58	21	4	0	0	0	0.018465	2	20662	20662;20714		59.368	43.219	1	334710			21430	790	14153	14299	29202;29203	29202					-0.005222917308628894
TYLDIFRDF	9	Unmodified	_TYLDIFRDF_					0	0	0		ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.298583984375	2	595.298039	1188.58152	0.19615	0.00011677	0.58704	0.00034946	0.78319	0.00046623	595.2983648821526	83.993	0.70622	84.015	83.56	84.266	0.021744					62	25	4	0	0	0	0.018465	1	20508	20508		59.368	40.006	1	308000			21431	790	14153	14299	29204	29204					-0.005222917308628894
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.8103637695312	2	523.810251	1045.60595	0.55686	0.00029169	-0.46941	-0.00024588	0.087449	4.5807E-05	523.8097977219103	97.515	0.65501	97.515	97.461	98.116	0					70	33	4	0	0	0	0.17247	1	24825	24825		21.747	4.8044	1	295870			21432	4379	14154	14300	29205	29205					0.08496968422650752
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.810302734375	2	523.810251	1045.60595	0.47489	0.00024875	-0.22603	-0.0001184	0.24886	0.00013036	523.809880867666	97.407	0.94121	97.448	97.275	98.216	0.040855					96	48	3	0	0	0	0.083504	2	24610	24610;24696		36.044	11.37	1	355840			21433	4379	14154	14300	29206;29207	29206					0.08496968422650752
TYLDKLKIS	9	Unmodified	_TYLDKLKIS_					0	0	0		nc|ENSG00000008382|Q8N594-2|MPND;nc|ENSG00000008382|Q8N594|MPND;ENSG00000008382|ENST00000599840|MPND	nc|ENSG00000008382|Q8N594-2|MPND	nc|ENSG00000008382|Q8N594-2|MPND	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.27734375	2	540.818607	1079.62266	-0.37746	-0.00020414	-0.48366	-0.00026157	-0.86112	-0.00046571	540.8183136768542	42.462	0.26587	42.462	42.333	42.599	0					13	8	2	0	0	0	0.25699	1	8062	8062		3.5965	0	1	32133			21434	397	14155	14301	29208	29208					0.08603469308627609
TYLDKVENI	9	Unmodified	_TYLDKVENI_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.790283203125	2	547.790047	1093.56554	0.2397	0.0001313	-4.0417	-0.002214	-3.802	-0.0020827	547.7900813195413	52.618	1.1418	52.618	52.246	53.388	0					182	42	6	0	0	0	0.0016629	2	11122	11085;11122		117.84	53.601	1	2558300			21435	5042	14156	14302	29209;29210	29210					0.022500020322468117
TYLDKVENI	9	Unmodified	_TYLDKVENI_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.790283203125	2	547.790047	1093.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.644	1	52.711	52.211	53.211	0.067173								0	0	0	1.1625E-08	1	10981	10981		117.84	57.764	1				21436	5042	14156	14302	29211	29211					0.022500020322468117
TYLDLLGTW	9	Unmodified	_TYLDLLGTW_					0	0	0		ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC	ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000533865.5_1_11:88068232-88070840:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2637939453125	2	541.281857	1080.54916	0.47925	0.00025941	-0.2476	-0.00013402	0.23165	0.00012539	541.2818995630415	96.248	0.83388	96.287	96.023	96.857	0.039772					94	43	4	0	0	0	0.073377	1	24330	24330		52.268	33.011	1	520490			21437	1642	14157	14303	29212	29212					0.012109208661513549
TYLDLLGTW	9	Unmodified	_TYLDLLGTW_					0	0	0		ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC	ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000533865.5_1_11:88068232-88070840:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	541.281857	1080.54916	0.38958	0.00021087	0.31736	0.00017178	0.70694	0.00038266	541.2819520641316	96.271	0.88213	96.271	95.989	96.872	0	-0.0081406	0.00028215	NaN	52.268	94	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	801320			21438	1642	14157	14303							0.012109208661513549
TYLDNGVVF	9	Unmodified	_TYLDNGVVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2586059570312	2	514.258382	1026.50221	0.077308	3.9756E-05	-0.32118	-0.00016517	-0.24387	-0.00012541	514.2583713696821	73.079	0.86331	73.079	72.853	73.716	0					50	30	3	0	0	0	0.006264	1	17329	17329		78.728	42.684	1	378940			21439	4248	14158	14304	29213	29213					-0.009979386849863658
TYLDNGVVF	9	Unmodified	_TYLDNGVVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2583618164062	2	514.258382	1026.50221	0.18432	9.4789E-05	-0.42686	-0.00021952	-0.24254	-0.00012473	514.2582504575952	73.041	0.73385	73.094	72.836	73.57	0.052567					47	27	3	0	0	0	0.03472	1	17198	17198		47.749	22.349	1	299460			21440	4248	14158	14304	29214	29214					-0.009979386849863658
TYLEAHRIVKM	11	Unmodified	_TYLEAHRIVKM_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.251220703125	3	454.251707	1359.73329	0.21021	9.5489E-05	-0.58957	-0.00026781	-0.37936	-0.00017232	454.2514058927917	37.602	0.46124	37.686	37.472	37.933	0.084476					23	14	2	0	0	0	0.41359	1	6466	6466		1.2148	0.20126	1	33383			21441	4165	14159	14305	29215	29215					0.06781366025188618
TYLEGECLELL	11	Unmodified	_TYLEGECLELL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8160400390625	2	641.815404	1281.61626	0.15104	9.6943E-05	0.16839	0.00010807	0.31943	0.00020502	641.8155078729654	89.294	1.2025	89.294	88.845	90.048	0					133	46	4	0	0	0	0.015471	2	22215	22215;22262		114.2	85.12	1	747410			21442	5489	14160	14306	29216;29217	29216					-0.013288367050563465
TYLEGECLELL	11	Unmodified	_TYLEGECLELL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8155517578125	2	641.815404	1281.61626	0.15488	9.9405E-05	0.12632	8.1071E-05	0.2812	0.00018048	641.8154936200841	89.18	1.0837	89.212	88.874	89.957	0.032265					129	41	4	0	0	0	0.011256	3	22038	22038;22078;22130		103.42	74.338	1	897870			21443	5489	14160	14306	29218;29219;29220	29218					-0.013288367050563465
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8292236328125	2	539.828975	1077.6434	0.24554	0.00013255	0.0069394	3.7461E-06	0.25248	0.0001363	539.8288952767642	46.601	1.927	46.601	46.384	48.311	0					175	79	3	0	0	0	0.002813	2	9295	9295;9334		110.79	46.876	1	2513500			21444	5124	14161	14307	29221;29222	29221					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8290405273438	2	539.828975	1077.6434	0.32805	0.00017709	-0.034955	-1.8869E-05	0.29309	0.00015822	539.8289210672222	46.518	1.2056	46.601	46.391	47.597	0.083092					140	59	3	0	0	0	0.0011298	2	9137	9137;9177		121.35	49.424	1	2243000			21445	5124	14161	14307	29223;29224	29223					0.10768059688280118
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000527389.2_1_11:108198407-108199966:+|nuORF;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7618408203125	2	526.28714	1050.55973	0.28656	0.00015082	-0.25849	-0.00013604	0.028074	1.4775E-05	526.2869128062108	47.957	0.51568	47.957	47.795	48.311	0					30	17	2	0	0	0	0.19661	1	9678	9678		27.223	3.4335	1	121380			21446	3400	14162	14308	29225	29225					0.03646903520575506
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000527389.2_1_11:108198407-108199966:+|nuORF;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.76171875	2	526.28714	1050.55973	0.44316	0.00023323	-0.11025	-5.8024E-05	0.33291	0.00017521	526.287128609632	47.874	0.3588	47.954	47.756	48.114	0.080032					21	12	2	0	0	0	0.22247	1	9510	9510		20.415	3.3016	1	83690			21447	3400	14162	14308	29226	29226					0.03646903520575506
TYLEKFQNL	9	Unmodified	_TYLEKFQNL_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7765502929688	2	578.305864	1154.59717	0.3091	0.00017876	-0.1412	-8.1658E-05	0.1679	9.7099E-05	578.3058073395432	56.302	0.64312	56.302	56.134	56.777	0					40	23	3	0	0	0	0.20294	1	12300	12300		24.991	10.586	1	321320			21448	1366	14163	14309	29227	29227					0.026059947862222543
TYLEKFQNL	9	Unmodified	_TYLEKFQNL_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7654418945312	2	578.305864	1154.59717	0.2804	0.00016215	-0.28194	-0.00016305	-0.0015466	-8.9441E-07	578.3057451687937	56.265	0.49623	56.331	56.161	56.657	0.066448					34	18	3	0	0	0	0.22821	1	12070	12070		19.362	8.5624	1	254690			21449	1366	14163	14309	29228	29228					0.026059947862222543
TYLITGAAGF	10	Unmodified	_TYLITGAAGF_					0	0	0		tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.26849365234375	2	507.26875	1012.52295	0.21316	0.00010813	-0.23169	-0.00011753	-0.018537	-9.4034E-06	507.26847411635526	61.108	0.44806	61.181	60.94	61.388	0.073418					26	14	2	0	0	0	0.33099	1	13586	13586		19.257	2.1441	1	128950			21450	13520	14164	14310	29229	29229					0.017186516946594566
TYLITGAAGF	10	Unmodified	_TYLITGAAGF_					0	0	0		tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	507.26875	1012.52295	0.30272	0.00015356	0.0158	8.0151E-06	0.31852	0.00016158	507.2685521753481	61.188	0.47614	61.188	60.942	61.418	0	0.003375	0.00011682	NaN	19.257	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113420			21451	13520	14164	14310							0.017186516946594566
TYLIVTSLL	9	Unmodified	_TYLIVTSLL_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.8106994628906	2	511.810251	1021.60595	0.54355	0.0002782	0.036951	1.8912E-05	0.5805	0.00029711	511.81021760184797	92.303	0.75672	92.303	92.037	92.793	0					42	28	2	0	0	0	0.10833	1	23196	23196		30.637	7.4881	1	203370			21452	4401	14165	14311	29230	29230					0.09600968422682854
TYLIVTSLL	9	Unmodified	_TYLIVTSLL_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.81011962890625	2	511.810251	1021.60595	0.48292	0.00024716	0.084213	4.3101E-05	0.56713	0.00029026	511.8101709965708	92.35	0.81494	92.387	92.048	92.863	0.03653					38	28	2	0	0	0	0.083124	2	23021	22994;23021		36.127	10.183	1	141180			21453	4401	14165	14311	29231;29232	29232					0.09600968422682854
TYLKLLKAWE	10	Unmodified	_TYLKLLKAWE_					0	0	0		ENST00000342992.10_3_2:179400465-179400825:-|nuORF	ENST00000342992.10_3_2:179400465-179400825:-|nuORF	ENST00000342992.10_3_2:179400465-179400825:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.8731384277344	3	422.24818	1263.72271	0.2681	0.00011321	0.5757	0.00024309	0.84381	0.0003563	422.5826518533237	47.379	0.42563	47.463	47.151	47.577	0.083096					21	16	2	0	0	0	0.3184	1	9335	9335		1.7423	0	1	51513			21454	6090	14166	14312	29233	29233					0.10139706642416968
TYLKSSEFF	9	Unmodified	_TYLKSSEFF_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.845947265625	2	561.279315	1120.54408	0.41113	0.00023076	-1.2949	-0.0007268	-0.88377	-0.00049604	561.2783008287814	91.15	0.1819	91.15	91.001	91.183	0					7	5	2	0	0	0	0.19376	1	22855	22855		25.399	3.6527	1	52164	+		21455	10025	14167	14313	29234	29234					-0.011373829964668403
TYLLDKTDLF	10	Unmodified	_TYLLDKTDLF_					0	0	0			REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.55523681640625	3	410.220178	1227.63871	0.032785	1.3449E-05	1.0735	0.00044036	1.1063	0.00045381	410.2203395655024	58.244	0.34916	58.314	58.184	58.533	0.070477					28	12	3	0	0	0	0.39086	1	12704	12704		12.856	1.957	1	105450	+		21456	10079	14168	14314	29235	29235					0.0339913075486038
TYLLDKTDLF	10	Unmodified	_TYLLDKTDLF_					0	0	0			REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	410.220178	1227.63871	0.24586	0.00010086	0.89266	0.00036619	1.1385	0.00046704	410.22044277996326	58.386	0.33828	58.386	58.256	58.595	0	0.035933	-0.00010515	NaN	12.856	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106560	+		21457	10079	14168	14314							0.0339913075486038
TYLLDKTDLF	10	Unmodified	_TYLLDKTDLF_					0	0	0			REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	410.220178	1227.63871	0.032785	1.3449E-05	1.0735	0.00044036	1.1063	0.00045381	410.2203395655024	58.244	0.34916	58.314	58.184	58.533	0.070477	-0.035933	0.00011736	NaN	12.856	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105450	+		21458	10079	14168	14314							0.0339913075486038
TYLLLTFPLF	10	Unmodified	_TYLLLTFPLF_					0	0	0			REV__ENST00000261593.7_1_18:29709388-29709517:+|nuORF	REV__ENST00000261593.7_1_18:29709388-29709517:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.55523681640625	3	409.905642	1226.6951	0.018069	7.4065E-06	-2.2861	-0.00093707	-2.268	-0.00092967	410.2390054776875	58.353	0.45964	58.424	58.231	58.691	0.070477					22	15	2	0	0	0	0.31667	1	12704	12704		9.544	2.9136	1	49618	+		21459	11233	14169	14315	29236	29236					0.09081803382173348
TYLLLTFPLF	10	Unmodified	_TYLLLTFPLF_					0	0	0			REV__ENST00000261593.7_1_18:29709388-29709517:+|nuORF	REV__ENST00000261593.7_1_18:29709388-29709517:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	409.905642	1226.6951	0.1717	7.0381E-05	-2.311	-0.00094729	-2.1393	-0.00087691	410.2389298411529	58.482	0.51859	58.482	58.327	58.846	0	0.029067	-1.9229E-05	NaN	9.544	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66817	+		21460	11233	14169	14315							0.09081803382173348
TYLLLVHLY	9	Unmodified	_TYLLLVHLY_					0	0	0			REV__ENST00000369738.8_1_1:111893945-111894095:+|nuORF	REV__ENST00000369738.8_1_1:111893945-111894095:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7279663085938	2	567.831517	1133.64848	-0.025469	-1.4462E-05	0.38235	0.00021711	0.35688	0.00020265	568.3331955408628	90.379	0.27135	90.413	90.329	90.601	0.034065					14	10	2	0	0	0	0.25174	1	22518	22518		7.2892	0	1	39867	+		21461	11585	14170	14316	29237	29237					0.08700363550906332
TYLLSVYRL	9	Unmodified	_TYLLSVYRL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7922973632812	2	564.326599	1126.63865	0.44165	0.00024923	-0.084856	-4.7886E-05	0.35679	0.00020135	564.3264909643841	68.757	0.661	68.757	68.53	69.191	0					62	24	3	0	0	0	0.24533	1	16158	16158		12.241	0	1	621920			21462	5648	14171	14317	29238	29238					0.08039175545513899
TYLLSVYRL	9	Unmodified	_TYLLSVYRL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.773193359375	2	564.326599	1126.63865	0.28173	0.00015899	-0.050019	-2.8227E-05	0.23172	0.00013076	564.32651055625	68.703	0.94122	68.765	68.508	69.449	0.062126					65	35	3	0	0	0	0.25052	1	16032	16032		8.7454	8.7454	1	474230			21463	5648	14171	14317	29239	29239					0.08039175545513899
TYLNDFFSY	9	Unmodified	_TYLNDFFSY_					0	0	0		nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	nc|ENSG00000128585|Q9UL63-2|MKLN1	nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8131103515625	2	585.261122	1168.50769	0.7724	0.00045206	-1.8758	-0.0010979	-1.1034	-0.0006458	585.259413138909	85.375	0.27001	85.375	85.189	85.459	0					15	9	2	0	0	0	0.18934	1	21051	21051		28.495	10.36	1	128640			21464	2401	14172	14318	29240	29240					-0.06982259893175069
TYLNDFFSY	9	Unmodified	_TYLNDFFSY_					0	0	0		nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	nc|ENSG00000128585|Q9UL63-2|MKLN1	nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8132934570312	2	585.261122	1168.50769	1.0176	0.00059554	-0.5799	-0.0003394	0.43766	0.00025615	585.2604962040723	85.364	0.48134	85.387	85.211	85.693	0.023132					27	19	2	0	0	0	0.092521	1	20941	20941		49.527	26.791	1	103240			21465	2401	14172	14318	29241	29241					-0.06982259893175069
TYLNFPVLI	9	Unmodified	_TYLNFPVLI_					0	0	0		ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.31005859375	2	540.310418	1078.60628	0.47368	0.00025594	-0.5676	-0.00030668	-0.093919	-5.0746E-05	540.3099283495864	96.819	0.46411	96.819	96.486	96.95	0					30	20	2	0	0	0	0.0569	1	24591	24591		41.84	16.44	1	133440			21466	6919	14173	14319	29242	29242					0.07012388142516102
TYLNFPVLI	9	Unmodified	_TYLNFPVLI_					0	0	0		ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.3119506835938	2	540.310418	1078.60628	0.59643	0.00032226	0.15487	8.3676E-05	0.7513	0.00040593	540.310372441636	96.717	0.4427	96.757	96.611	97.054	0.039772					33	21	2	0	0	0	0.11547	1	24429	24429		29.082	3.6823	1	162170			21467	6919	14173	14319	29243	29243					0.07012388142516102
TYLNWLVRM	9	Oxidation (M)	_TYLNWLVRM(Oxidation (M))_		TYLNWLVRM(1)		TYLNWLVRM(59)	0	0	1		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3154907226562	2	606.315709	1210.61686	0.68329	0.00041429	-0.61969	-0.00037572	0.063603	3.8564E-05	606.3153631638685	68.063	0.99506	68.063	67.857	68.852	0					65	35	3	0	0	0	0.018465	1	15872	15872		59.368	38.915	1	275200			21468	1357	14174	14320	29244	29244		83			0.019980475252850738
TYLNWLVRM	9	Oxidation (M)	_TYLNWLVRM(Oxidation (M))_		TYLNWLVRM(1)		TYLNWLVRM(110)	0	0	1		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.792724609375	2	606.315709	1210.61686	0.81815	0.00049606	-0.33827	-0.0002051	0.47988	0.00029096	606.3155968327998	69.854	1.7505	69.854	69.518	71.269	0					113	62	4	0	0	0	0.00043425	1	16385	16385		106.94	77.859	1	411390			21469	1357	14174	14320	29245	29245		83			0.019980475252850738
TYLNWLVRM	9	Oxidation (M)	_TYLNWLVRM(Oxidation (M))_		TYLNWLVRM(1)		TYLNWLVRM(90)	0	0	1		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3165283203125	2	606.315709	1210.61686	0.82657	0.00050116	0.093247	5.6537E-05	0.91981	0.0005577	606.3156666707271	69.814	1.4642	69.875	69.448	70.912	0.060562					98	58	2	0	0	0	0.0045224	1	16159	16159		90.135	61.053	1	234590			21470	1357	14174	14320	29246	29246		83			0.019980475252850738
TYLNWLVRM	9	Oxidation (M)	_TYLNWLVRM(Oxidation (M))_					0	0	1		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	606.315709	1210.61686	0.88955	0.00053935	-0.49914	-0.00030264	0.39041	0.00023671	606.3154112491245	68.022	1.1552	68.085	67.845	69	0.063507	0.011213	6.1912E-05	NaN	59.368	66	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278440			21471	1357	14174	14320				83			0.019980475252850738
TYLNWLVRM	9	Unmodified	_TYLNWLVRM_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3396606445312	2	598.318251	1194.62195	0.30312	0.00018136	0.098879	5.9161E-05	0.402	0.00024052	598.3183524828618	76.731	0.50868	76.731	76.55	77.059	0					36	17	3	0	0	0	0.11174	1	18455	18455		43.772	31.241	1	127860			21472	1357	14174	14321	29247	29247					0.03242351387916642
TYLNWLVRM	9	Unmodified	_TYLNWLVRM_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.33984375	2	598.318251	1194.62195	0.28806	0.00017235	-0.22117	-0.00013233	0.066891	4.0022E-05	598.3182837551207	76.694	0.44366	76.733	76.552	76.996	0.03923					26	15	2	0	0	0	0.12752	1	18301	18301		39.95	25.111	1	102280			21473	1357	14174	14321	29248	29248					0.03242351387916642
TYLNYVVHL	9	Unmodified	_TYLNYVVHL_					0	0	0		ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.288818359375	2	561.303124	1120.5917	0.65146	0.00036567	-1.7294	-0.0009707	-1.0779	-0.00060503	561.3020814706938	67.093	0.77872	67.093	66.807	67.586	0					55	25	3	0	0	0	0.006264	3	15523	15505;15523;15568		78.728	53.329	1	412940			21474	5184	14175	14322	29249;29250;29251	29250					0.036223159943801875
TYLNYVVHL	9	Unmodified	_TYLNYVVHL_					0	0	0		ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2890014648438	2	561.303124	1120.5917	0.81308	0.00045638	-1.5358	-0.00086203	-0.72269	-0.00040565	561.3021793621887	67.072	0.77397	67.137	66.923	67.697	0.065071					53	26	3	0	0	0	0.0093779	3	15360	15360;15412;15512		69.105	46.369	1	328410			21475	5184	14175	14322	29252;29253;29254	29252					0.036223159943801875
TYLPAGQSVLL	11	Unmodified	_TYLPAGQSVLL_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3275756835938	2	581.329339	1160.64412	0.5305	0.0003084	-3.2792	-0.0019063	-2.7487	-0.0015979	581.327180778595	74.646	1.0272	74.646	74.171	75.199	0					54	37	2	0	0	0	0.16017	3	17830	17784;17830;17837		36.395	18.952	1	225470			21476	4198	14176	14323	29255;29256;29257	29256					0.07022854337355966
TYLPAGQSVLL	11	Unmodified	_TYLPAGQSVLL_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.329345703125	2	581.329339	1160.64412	0.61451	0.00035723	-1.9979	-0.0011615	-1.3834	-0.00080423	581.3284420569578	74.601	0.68293	74.65	74.316	74.999	0.048538					46	24	3	0	0	0	0.22106	2	17672	17641;17672		27.088	12.507	1	186710			21477	4198	14176	14323	29258;29259	29259					0.07022854337355966
TYLPAPEGLKF	11	Unmodified	_TYLPAPEGLKF_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3372192382812	2	618.337164	1234.65977	0.12876	7.9619E-05	0.039199	2.4238E-05	0.16796	0.00010386	618.3371563350983	67.102	0.94135	67.102	66.807	67.748	0					102	34	4	0	0	0	0.020241	3	15531	15485;15531;15574		64.927	52.686	1	1708600			21478	540	14177	14324	29260;29261;29262	29261					0.05183140854364865
TYLPAPEGLKF	11	Unmodified	_TYLPAPEGLKF_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.838623046875	2	618.337164	1234.65977	0.32822	0.00020295	-0.2251	-0.00013919	0.10312	6.3766E-05	618.3369946635058	67.072	0.94215	67.137	66.871	67.813	0.065071					100	32	4	0	0	0	0.082478	3	15335	15335;15387;15436		49.742	38.247	1	1393000			21479	540	14177	14324	29263;29264;29265	29263					0.05183140854364865
TYLPDFLDYF	10	Unmodified	_TYLPDFLDYF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.3051147460938	2	647.305529	1292.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.06	1	106.06	105.56	106.56	0								0	0	0	0.3327	1	27338	27338		8.7454	5.7502	1				21480	5116	14178	14325	29266	29266					-0.038088446535084586
TYLPDFLDYF	10	Unmodified	_TYLPDFLDYF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.306396484375	2	647.305529	1292.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.19	1	106.19	105.69	106.69	0								0	0	0	0.071248	1	27375	27375		51.63	44.528	1				21481	5116	14178	14325	29267	29267					-0.038088446535084586
TYLPDFLDYF	10	Unmodified	_TYLPDFLDYF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.30615234375	2	647.305529	1292.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.32	1	106.32	105.82	106.82	0								0	0	0	0.31183	1	27413	27413		16.149	9.0474	1				21482	5116	14178	14325	29268	29268					-0.038088446535084586
TYLPDFLDYF	10	Unmodified	_TYLPDFLDYF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.3050537109375	2	647.305529	1292.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.03	1	106.06	105.56	106.56	0.029739								0	0	0	0.24021	1	27140	27140		24.991	17.889	1				21483	5116	14178	14325	29269	29269					-0.038088446535084586
TYLPDFLDYF	10	Unmodified	_TYLPDFLDYF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.3056640625	2	647.305529	1292.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.15	1	106.18	105.68	106.68	0.029739								0	0	0	0.082593	1	27174	27174		49.554	42.453	1				21484	5116	14178	14325	29270	29270					-0.038088446535084586
TYLPDFLDYF	10	Unmodified	_TYLPDFLDYF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.3057861328125	2	647.305529	1292.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.28	1	106.31	105.81	106.81	0.029739								0	0	0	0.32971	1	27206	27206		12.241	5.1389	1				21485	5116	14178	14325	29271	29271					-0.038088446535084586
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2979125976562	2	549.297507	1096.58046	0.39837	0.00021882	0.33541	0.00018424	0.73378	0.00040307	549.2975095243495	76.777	0.95623	76.777	76.298	77.254	0					74	33	4	0	0	0	0.0045417	3	18514	18464;18514;18569		89.401	47.561	1	899440			21486	2772	14179	14326	29272;29273;29274	29273					0.03603493900232024
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2977294921875	2	549.297507	1096.58046	0.47819	0.00026267	0.24985	0.00013724	0.72803	0.00039991	549.2974673153806	76.717	0.75781	76.756	76.498	77.256	0.03923					64	27	3	0	0	0	0.0089808	3	18331	18286;18331;18379		70.332	38.027	1	777080			21487	2772	14179	14326	29275;29276;29277	29276					0.03603493900232024
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.305419921875	2	556.305332	1110.59611	0.46583	0.00025914	-0.51313	-0.00028546	-0.047306	-2.6317E-05	556.3051969038313	77.358	0.28609	77.358	77.32	77.606	0					17	12	2	0	0	0	0.18398	1	18695	18695		20.415	4.5674	1	316440			21488	2756	14180	14327	29278	29278					0.045237804172757023
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7600708007812	2	556.305332	1110.59611	0.47424	0.00026382	-0.29308	-0.00016304	0.18116	0.00010078	556.3050829869599	77.147	0.42555	77.147	76.895	77.32	0					38	18	3	0	0	0	0.099539	1	18630	18630		45.7	18.816	1	637160			21489	2756	14180	14327	29279	29279					0.045237804172757023
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3056030273438	2	556.305332	1110.59611	0.65665	0.0003653	-0.34063	-0.0001895	0.31601	0.0001758	556.3048597137524	77.149	0.83461	77.184	76.906	77.74	0.034485					50	34	3	0	0	0	0.0077293	2	18434	18434;18493		74.2	38.073	1	426550			21490	2756	14180	14327	29280;29281	29280					0.045237804172757023
TYLPQVSHYRF	11	Unmodified	_TYLPQVSHYRF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.9102783203125	3	470.910338	1409.70918	0.016901	7.9588E-06	-0.16074	-7.5692E-05	-0.14384	-6.7733E-05	470.9101823775835	52.823	0.82605	52.823	52.584	53.41	0					74	31	4	0	0	0	0.38451	1	11158	11158		7.846	1.9779	1	314220			21491	3194	14181	14328	29282	29282					0.02071848863147352
TYLPQVSHYRF	11	Unmodified	_TYLPQVSHYRF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7585754394531	3	470.910338	1409.70918	0.077788	3.6631E-05	-0.18906	-8.9029E-05	-0.11127	-5.2398E-05	470.9101858476896	52.803	0.83523	52.87	52.578	53.413	0.066799					78	36	3	0	0	0	0.31094	1	10964	10964		2.084	0	1	293430			21492	3194	14181	14328	29283	29283					0.02071848863147352
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.7869873046875	2	502.786776	1003.559	0.27566	0.0001386	0.23338	0.00011734	0.50904	0.00025594	502.78676877531	77.074	0.49921	77.074	76.781	77.28	0					45	18	4	0	0	0	0.0020132	1	18537	18537		115.69	41.269	1	1020800			21493	872	14182	14329	29284	29284					0.057361088715197184
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.78692626953125	2	502.786776	1003.559	0.37103	0.00018655	0.19225	9.6659E-05	0.56327	0.00028321	502.7867496653199	76.947	0.53382	76.986	76.758	77.292	0.03923					45	20	3	0	0	0	0.00070411	2	18367	18367;18414		128.37	43.009	1	908340			21494	872	14182	14329	29285;29286	29285					0.057361088715197184
TYLQALPYF	9	Unmodified	_TYLQALPYF_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.783935546875	2	558.292225	1114.5699	0.29583	0.00016516	1.1306	0.00063119	1.4264	0.00079635	558.2924513565856	86.325	0.45988	86.325	86.125	86.585	0					27	16	2	0	0	0	0.0569	1	21368	21368		41.84	3.8656	1	286410			21495	3707	14183	14330	29287	29287					0.01719511245778449
TYLQALPYF	9	Unmodified	_TYLQALPYF_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2835693359375	2	558.292225	1114.5699	0.53188	0.00029694	0.55328	0.00030889	1.0852	0.00060583	558.2921972371809	86.32	0.58141	86.345	86.088	86.67	0.025169					36	22	3	0	0	0	0.16392	1	21220	21220		22.736	4.5899	1	307770			21496	3707	14183	14330	29288	29288					0.01719511245778449
TYLQALPYF	9	Unmodified	_TYLQALPYF_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	558.292225	1114.5699	0.53188	0.00029694	0.55328	0.00030889	1.0852	0.00060583	558.2921972371809	86.32	0.58141	86.345	86.088	86.67	0.025169	0.0099874	-0.00022456	NaN	41.84	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307770			21497	3707	14183	14330							0.01719511245778449
TYLQRPSSFH	10	Unmodified	_TYLQRPSSFH_					0	0	0		ENST00000542472.1_1_12:6626979-6631036:+|nuORF	ENST00000542472.1_1_12:6626979-6631036:+|nuORF	ENST00000542472.1_1_12:6626979-6631036:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3088989257812	2	618.312012	1234.60947	-0.2488	-0.00015383	-1.9846	-0.0012271	-2.2334	-0.0013809	618.3100843676791	72.822	1.0205	72.874	72.489	73.51	0.052567					68	37	3	0	0	0	0.40359	1	17264	17264		11.495	1.3441	1	508680			21498	7068	14184	14331	29289	29289					0.0015503124923270661
TYLSIFDQL	9	Unmodified	_TYLSIFDQL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.287353515625	2	550.28714	1098.55973	0.4632	0.00025489	0.85484	0.00047041	1.318	0.0007253	550.2877404217147	91.17	1.0077	91.17	90.785	91.793	0					79	36	3	0	0	0	0.0028522	2	22854	22854;22924		110.55	62.207	1	455770			21499	4922	14185	14332	29290;29291	29290					0.01438903520556778
TYLSIIHSL	9	Unmodified	_TYLSIIHSL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7971801757812	2	523.797675	1045.5808	0.35009	0.00018338	-0.71528	-0.00037466	-0.3652	-0.00019129	523.7973401334343	67.966	0.65627	67.966	67.812	68.469	0					30	23	2	0	0	0	0.03472	1	15800	15800		47.749	5.9091	1	113800			21500	2612	14186	14333	29292	29292					0.05982913620096042
TYLSIIHSL	9	Unmodified	_TYLSIIHSL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	523.797675	1045.5808	0.4418	0.00023141	-0.066605	-3.4888E-05	0.3752	0.00019653	523.7976452264496	68.017	0.46508	68.08	67.782	68.247	0.063507	0.056977	0.00039121	NaN	47.749	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102690			21501	2612	14186	14333							0.05982913620096042
TYLTIFDLF	9	Unmodified	_TYLTIFDLF_					0	0	0		nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8096313476562	2	566.799883	1131.58521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.62	1	101.62	101.12	102.12	0								0	0	0	0.17567	1	26039	26039		21.747	5.8995	1				21502	3503	14187	14334	29293	29293					0.024683780429768376
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(44)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7626953125	2	616.76264	1231.51073	-0.14613	-9.0126E-05	0.56874	0.00035078	0.42261	0.00026065	616.7627167113045	71.371	0.75914	71.371	71.074	71.834	0					55	26	3	0	0	0	0.045114	2	16808	16808;16855		44.407	33.583	1	338680			21503	450	14188	14335	29294;29295	29294		22			-0.09576752830685109
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(67)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7627563476562	2	616.76264	1231.51073	-0.49363	-0.00030445	1.0752	0.00066315	0.58159	0.0003587	616.7629864553929	72.998	1.5389	72.998	72.348	73.887	0					133	54	4	0	0	0	0.0099477	2	17266	17266;17323		67.344	56.52	1	617030			21504	450	14188	14335	29296;29297	29296		22			-0.09576752830685109
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(67)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.7628784179688	2	616.76264	1231.51073	-0.32256	-0.00019894	0.9777	0.00060301	0.65513	0.00040406	616.7629210234588	72.833	0.9711	72.885	72.427	73.398	0.052574					89	34	4	0	0	0	0.0099477	2	17080	17080;17155		67.344	56.52	1	444330			21505	450	14188	14335	29298;29299	29298		22			-0.09576752830685109
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(42)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.3062133789062	2	616.76264	1231.51073	-0.074497	-4.5947E-05	0.21949	0.00013537	0.14499	8.9426E-05	616.7624669407445	71.248	0.68081	71.306	71.108	71.789	0.058578					54	24	3	0	0	0	0.10508	1	16683	16683		42.095	31.271	1	352190			21506	450	14188	14335	29300	29300		22			-0.09576752830685109
TYMETYVYF	9	Unmodified	_TYMETYVYF_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.3055419921875	2	608.765183	1215.51581	0.45951	0.00027973	-0.5458	-0.00033226	-0.086288	-5.2529E-05	608.7647645310769	79.357	0.55032	79.384	79.098	79.648	0.026428					32	19	2	0	0	0	0.24263	1	19142	19142		12.532	4.6214	1	106510			21507	450	14188	14336	29301	29301					-0.08332448968053541
TYMKDLYQL	9	Oxidation (M)	_TYM(Oxidation (M))KDLYQL_		TYM(1)KDLYQL		TYM(40)KDLYQL	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.7921142578125	2	595.791732	1189.56891	0.10872	6.4772E-05	0.25541	0.00015217	0.36412	0.00021694	595.7917364274724	51.189	1.1548	51.259	50.936	52.091	0.069878					106	43	3	0	0	0	0.064247	1	10537	10537		40.239	18.702	1	211700			21508	3286	14189	14337	29302	29302		213			-0.018290711854206165
TYNDQSITF	9	Unmodified	_TYNDQSITF_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7484130859375	2	544.748379	1087.4822	0.021196	1.1546E-05	0.097941	5.3353E-05	0.11914	6.49E-05	544.7483786787109	58.912	1.1023	58.912	58.708	59.81	0					87	42	3	0	0	0	0.0034419	1	13005	13005		106.94	62.533	1	718770			21509	2826	14190	14338	29303	29303					-0.05803734415621875
TYNDQSITF	9	Unmodified	_TYNDQSITF_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7483520507812	2	544.748379	1087.4822	0.21407	0.00011661	-0.066225	-3.6076E-05	0.14784	8.0538E-05	544.7483377177712	58.947	0.95437	59.017	58.691	59.645	0.070477					81	36	3	0	0	0	0.0028522	2	12883	12837;12883		110.55	66.146	1	454970			21510	2826	14190	14338	29304;29305	29305					-0.05803734415621875
TYNIEQRT	8	Unmodified	_TYNIEQRT_					0	0	0			REV__nc|ENSG00000150672|Q15700-5|DLG2	REV__nc|ENSG00000150672|Q15700-5|DLG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7567138671875	2	512.756538	1023.49852	-0.13772	-7.0617E-05	0.43523	0.00022317	0.29751	0.00015255	512.7567918054418	27.274	0.29074	27.274	27.139	27.429	0					25	16	2	0	0	0	0.52902	2	3490	3490;3505		8.7454	1.1365	1	18865	+		21511	9632	14191	14339	29306;29307	29306					-0.012286084588595259
TYNIEQRT	8	Unmodified	_TYNIEQRT_					0	0	0			REV__nc|ENSG00000150672|Q15700-5|DLG2	REV__nc|ENSG00000150672|Q15700-5|DLG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7568969726562	2	512.756538	1023.49852	-0.093659	-4.8024E-05	0.29922	0.00015343	0.20556	0.0001054	512.7567819527293	27.144	0.29836	27.231	27.094	27.393	0.0867					33	21	2	0	0	0	0.52989	1	3320	3320		8.1555	1.0538	1	32434	+		21512	9632	14191	14339	29308	29308					-0.012286084588595259
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2847290039062	2	545.2844	1088.55425	0.33005	0.00017997	-0.12147	-6.6235E-05	0.20858	0.00011374	545.2842797555488	95.974	1.2363	95.974	95.672	96.908	0					172	59	5	0	0	0	1.1335E-12	4	24316	24276;24316;24465;24516		179.17	111.09	1	2894100			21513	486	14192	14340	29309;29310;29311;29312	29310					0.013512247287280843
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2845458984375	2	545.2844	1088.55425	0.35023	0.00019097	-0.12801	-6.9801E-05	0.22222	0.00012117	545.2842991722779	95.914	1.3662	95.954	95.688	97.054	0.039772					130	69	2	0	0	0	1.0594E-10	4	24152	24103;24113;24152;24309		176.84	98.688	1	1967800			21514	486	14192	14340	29313;29314;29315;29316	29315					0.013512247287280843
TYNKKHTTLR	10	Unmodified	_TYNKKHTTLR_					0	0	0			REV__nc|ENSG00000198521|P17038-2|ZNF43	REV__nc|ENSG00000198521|P17038-2|ZNF43	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.873046875	3	421.238566	1260.69387	0.5984	0.00025207	0.85597	0.00036057	1.4544	0.00061264	421.5747191517598	47.35	0.28373	47.35	47.116	47.4	0					13	9	2	0	0	0	0.31766	1	9517	9517		5.7834	0.38072	1	54466	+		21515	10899	14193	14341	29317	29317					0.0739498206596636
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.8112182617188	2	584.811116	1167.60768	0.82408	0.00048193	-0.12116	-7.0856E-05	0.70292	0.00041107	584.8109062358956	54.35	0.36833	54.35	54.131	54.499	0					22	14	2	0	0	0	0.020768	1	11636	11636		57.722	48.339	1	111630			21516	3439	14194	14342	29318	29318					0.030580222312892147
TYNLLEFQWH	10	Unmodified	_TYNLLEFQWH_					0	0	0			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.8877868652344	3	450.887422	1349.64044	-0.056375	-2.5419E-05	1.9987	0.00090117	1.9423	0.00087575	450.88839443915066	45.319	0.49033	45.406	45.181	45.671	0.08754					40	18	3	0	0	0	0.46608	1	8818	8818		1.7423	0.28716	1	77015	+		21517	8880	14195	14343	29319	29319					-0.020398154365466326
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(54)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7901000976562	2	548.788992	1095.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.353	1	80.353	79.853	80.853	0								0	0	0	0.036979	1	19571	19571		53.833	6.0841	1				21518	531	14196	14344	29320	29320		25			0.019472500227720957
TYNNPVIYI	9	Unmodified	_TYNNPVIYI_					0	0	0		nc|ENSG00000249948|Q9H227|GBA3	nc|ENSG00000249948|Q9H227|GBA3	nc|ENSG00000249948|Q9H227|GBA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2899780273438	2	548.787307	1095.56006	0.65002	0.00035672	1.5517	0.00085157	2.2017	0.0012083	548.7881289117842	97.407	0.6873	97.448	97.295	97.982	0.040855					57	34	2	0	0	0	0.26684	1	24689	24689		10.824	1.4408	1	215410			21519	7612	14197	14345	29321	29321					0.016103232404248047
TYNPEIYVI	9	Unmodified	_TYNPEIYVI_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2882690429688	2	556.28714	1110.55973	0.22712	0.00012634	0.34443	0.0001916	0.57155	0.00031795	556.2873432326013	73.481	0.66536	73.481	73.254	73.92	0					48	23	3	0	0	0	0.065576	1	17456	17456		39.95	19.496	1	329390			21520	3987	14198	14346	29322	29322					0.008869035205634646
TYNPEIYVI	9	Unmodified	_TYNPEIYVI_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2874755859375	2	556.28714	1110.55973	0.52287	0.00029086	-0.098037	-5.4537E-05	0.42483	0.00023633	556.2870950214568	73.374	0.59857	73.426	73.338	73.937	0.052567					49	23	3	0	0	0	0.15282	1	17286	17286		24.021	4.7636	1	235820			21521	3987	14198	14346	29323	29323					0.008869035205634646
TYNQHYNNL	9	Unmodified	_TYNQHYNNL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.7652587890625	2	583.764894	1165.51524	0.067565	3.9442E-05	0.11677	6.8167E-05	0.18434	0.00010761	583.7648599839918	32.097	0.66772	32.097	31.897	32.564	0					39	27	2	0	0	0	0.30397	2	4934	4886;4934		6.2058	1.8765	1	43959			21522	4986	14199	14347	29324;29325	29325					-0.06090107572890702
TYNQHYNNL	9	Unmodified	_TYNQHYNNL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.765380859375	2	583.764894	1165.51524	0.23914	0.0001396	-0.30374	-0.00017731	-0.064594	-3.7708E-05	583.7646959297224	32.027	0.58043	32.1	31.954	32.534	0.07378					50	27	3	0	0	0	0.33849	1	4766	4766		1.6526	0.96225	1	49728			21523	4986	14199	14347	29326	29326					-0.06090107572890702
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2880859375	2	569.288005	1136.56146	-0.15317	-8.7198E-05	0.69507	0.0003957	0.5419	0.0003085	569.2884417232367	32.251	0.4248	32.251	32	32.425	0					25	15	2	0	0	0	0.24021	1	4953	4953		13.906	6.2971	1	44441			21524	4066	14200	14348	29327	29327					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.28857421875	2	569.288005	1136.56146	-0.091639	-5.2169E-05	1.5859	0.00090283	1.4943	0.00085066	569.2883073172943	32.153	0.40386	32.226	32.052	32.456	0.07378					53	19	3	0	0	0	0.2546	1	4799	4799		12.241	4.9514	1	53482			21525	4066	14200	14348	29328	29328					-0.001360426708288287
TYNQLADHYL	10	Unmodified	_TYNQLADHYL_					0	0	0			REV__nc|ENSG00000143595|Q96PS8-2|AQP10	REV__nc|ENSG00000143595|Q96PS8-2|AQP10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.8107299804688	2	619.296027	1236.5775	-0.1821	-0.00011277	-1.6766	-0.0010383	-1.8587	-0.0011511	619.2948988219049	57.016	0.43554	57.016	56.777	57.213	0					24	15	2	0	0	0	0.31731	1	12462	12462		6.2058	0.9089	1	190750	+		21526	9469	14201	14349	29329	29329					-0.0313238122457733
TYNQLADHYL	10	Unmodified	_TYNQLADHYL_					0	0	0			REV__nc|ENSG00000143595|Q96PS8-2|AQP10	REV__nc|ENSG00000143595|Q96PS8-2|AQP10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	619.296027	1236.5775	-0.084539	-5.2355E-05	-1.2369	-0.00076601	-1.3214	-0.00081836	619.295459330415	56.621	0.13507	56.688	56.6	56.735	0.066452	-0.16437	0.00034355	NaN	6.2058	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101630	+		21527	9469	14201	14349							-0.0313238122457733
TYNTSNFLP	9	Unmodified	_TYNTSNFLP_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7526245117188	2	528.753464	1055.49238	0.22281	0.00011781	-2.3523	-0.0012438	-2.1295	-0.001126	528.7523251703457	59.499	0.36383	59.499	59.336	59.7	0					24	14	2	0	0	0	0.29576	1	13215	13215		7.2892	1.0834	1	151120	+		21528	10802	14202	14350	29330	29330					-0.03315126690381476
TYNYPVHYF	9	Unmodified	_TYNYPVHYF_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2767944335938	2	602.277106	1202.53966	0.35945	0.00021649	-0.12301	-7.4084E-05	0.23645	0.00014241	602.2769799536504	56.624	1.7609	56.624	56.379	58.14	0					121	63	2	0	0	0	0.0027323	2	12306	12265;12306		111.29	80.651	1	1560100			21529	1771	14203	14351	29331;29332	29332					-0.053508474193904476
TYNYPVHYF	9	Unmodified	_TYNYPVHYF_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.277099609375	2	602.277106	1202.53966	0.43234	0.00026039	-0.1616	-9.7329E-05	0.27074	0.00016306	602.2769978635362	56.547	1.307	56.613	56.388	57.695	0.066452					92	48	2	0	0	0	0.0045534	1	12143	12143		88.954	58.317	1	1574500			21530	1771	14203	14351	29333	29333					-0.053508474193904476
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.7614135742188	2	517.761289	1033.50803	0.29799	0.00015429	-0.027157	-1.4061E-05	0.27083	0.00014023	517.7611875059963	59.505	1.0858	59.505	59.277	60.363	0					102	41	4	0	0	0	8.9867E-09	2	13195	13195;13239		160.52	114.5	1	1084300			21531	1526	14204	14352	29334;29335	29334					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.7612915039062	2	517.761289	1033.50803	0.19344	0.00010016	-0.035004	-1.8124E-05	0.15844	8.2033E-05	517.7611803775952	59.465	1.1255	59.537	59.271	60.397	0.072338					85	42	3	0	0	0	0.0010793	2	13040	13040;13083		122.18	84.205	1	852980			21532	1526	14204	14352	29336;29337	29336					-0.007388401733351202
TYPASLHAQLC	11	Unmodified	_TYPASLHAQLC_					0	0	0		nc|ENSG00000157110|Q93062-2|RBPMS	nc|ENSG00000157110|Q93062-2|RBPMS	nc|ENSG00000157110|Q93062-2|RBPMS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7891845703125	2	602.294973	1202.57539	0.64013	0.00038555	-4.4474	-0.0026786	-3.8073	-0.0022931	602.2924410326315	63.906	0.73302	63.906	63.563	64.296	0					34	25	2	0	0	0	0.31001	1	14549	14549		9.3831	2.66	1	145120			21533	7536	14205	14353	29338	29338					-0.017791332340266308
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7431640625	2	511.743096	1021.47164	0.17854	9.1367E-05	-0.17777	-9.0974E-05	0.00076763	3.9283E-07	511.74302768268933	50.978	0.7071	50.978	50.651	51.358	0					41	23	2	0	0	0	0.08788	1	10611	10611		49.554	20.473	1	512610			21534	2201	14206	14354	29339	29339					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7432556152344	2	511.743096	1021.47164	0.28456	0.00014562	-0.23129	-0.00011836	0.053268	2.7259E-05	511.74296653303884	50.872	0.64364	50.941	50.666	51.31	0.069878					46	24	2	0	0	0	0.0042616	1	10439	10439		100.09	58.251	1	435980			21535	2201	14206	14354	29340	29340					-0.03823717070042676
TYPDYGGEFD	10	Unmodified	_TYPDYGGEFD_					0	0	0			REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7321166992188	2	582.230019	1162.44548	-0.078469	-4.5687E-05	0.12015	6.9953E-05	0.041677	2.4266E-05	582.230044028256	24.514	0.29334	24.514	24.369	24.662	0					34	22	2	0	0	0	0.46746	1	2688	2688		1.4819	0.15237	1	18898	+		21536	13119	14207	14355	29341	29341					-0.12924031032184757
TYPDYGGEFD	10	Unmodified	_TYPDYGGEFD_					0	0	0			REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7321166992188	2	582.230019	1162.44548	-0.078469	-4.5687E-05	0.12015	6.9953E-05	0.041677	2.4266E-05	582.230044028256	24.514	0.29334	24.514	24.369	24.662	0					34	22	2	0	0	0	0.31838	1	2688	2688		1.4819	0.15237	1	18898	+		21537	13119	14207	14355	29342	29342					-0.12924031032184757
TYPENWRAF	9	Unmodified	_TYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.2803344726562	2	592.28018	1182.54581	0.41168	0.00024383	-0.17448	-0.00010334	0.2372	0.00014049	592.2801436106521	55.807	1.2839	55.807	55.441	56.725	0					129	46	5	0	0	0	0.064247	4	12072	12062;12072;12122;12155		40.239	26.333	1	765840			21538	5695	14208	14356	29343;29344;29345;29346	29344					-0.03816329187861811
TYPENWRAF	9	Unmodified	_TYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.2802124023438	2	592.28018	1182.54581	0.34408	0.00020379	0.28955	0.00017149	0.63363	0.00037529	592.2802176250872	55.756	1.1622	55.821	55.463	56.625	0.065128					83	43	3	0	0	0	0.15482	4	11952	11902;11952;11996;12005		23.79	11.206	1	672090			21539	5695	14208	14356	29347;29348;29349;29350	29348					-0.03816329187861811
TYPESKRLV	9	Unmodified	_TYPESKRLV_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.26025390625	2	546.806031	1091.59751	0.25915	0.0001417	-0.82587	-0.00045159	-0.56672	-0.00030989	546.805414704564	56.851	0.67921	56.851	56.65	57.329	0					41	24	2	0	0	0	0.23598	1	12529	12529		15.847	1.0089	1	209020	+		21540	9136	14209	14357	29351	29351					0.05537414506034111
TYPHLSCFS	9	Unmodified	_TYPHLSCFS_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.1552734375	2	527.73676	1053.45897	0.25009	0.00013198	1.9459	0.0010269	2.196	0.0011589	527.7371811384946	37.463	0.17757	37.548	37.42	37.598	0.084476					8	5	2	0	0	0	0.25875	1	6382	6382		1.8442	0.19162	1	9609.9			21541	1066	14210	14358	29352	29352					-0.06562451733930175
TYPIKDVYP	9	Unmodified	_TYPIKDVYP_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|52|3|sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|52|3|sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|52|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7869873046875	2	548.289682	1094.56481	0.39716	0.00021776	-3.8586	-0.0021156	-3.4614	-0.0018979	548.787079695788	52.56	1.0388	52.627	52.291	53.33	0.067169					155	44	5	0	0	0	0.16392	1	11023	11023		22.736	0.98964	1	1179300			21542	7384	14211	14359	29353	29353					0.02131207383195033
TYPKEEELYA	10	Unmodified	_TYPKEEELYA_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.81689453125	2	621.798069	1241.58158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.701	1	64.701	64.201	65.201	0								0	0	0	0.29565	1	14794	14794		18.146	1.9972	1				21543	1949	14212	14360	29354	29354					-0.029543365214976802
TYPKLFKKL	9	Unmodified	_TYPKLFKKL_					0	0	0			REV__nc|ENSG00000069849|P54709-2|ATP1B3	REV__nc|ENSG00000069849|P54709-2|ATP1B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.3547973632812	2	569.35516	1136.69577	0.25807	0.00014693	0.24989	0.00014228	0.50796	0.00028921	569.3551714360993	57.871	0.30544	57.939	57.802	58.108	0.068375					15	11	2	0	0	0	0.3182	1	12604	12604		4.3292	0	1	89270	+		21544	8141	14213	14361	29355	29355					0.13288642821885333
TYPPFVNFF	9	Unmodified	_TYPPFVNFF_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7571411132812	2	566.279118	1130.54368	0.20605	0.00011668	-0.33144	-0.00018769	-0.12539	-7.1006E-05	566.2792782109035	95.248	0.89756	95.248	94.974	95.872	0					89	39	4	0	0	0	0.20194	1	24047	24047		24.021	13.837	1	440870			21545	1837	14214	14362	29356	29356					-0.01636757925666643
TYPPFVNFF	9	Unmodified	_TYPPFVNFF_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2796020507812	2	566.279118	1130.54368	0.16517	9.3533E-05	-0.14031	-7.9455E-05	0.024861	1.4078E-05	566.2793310739168	95.222	0.85681	95.261	94.981	95.838	0.038872					81	37	4	0	0	0	0.0044564	1	23963	23963		92.653	73.396	1	373030			21546	1837	14214	14362	29357	29357					-0.01636757925666643
TYPSPDIFLVI	11	Unmodified	_TYPSPDIFLVI_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.8450927734375	2	632.844822	1263.67509	0.3108	0.00019669	0.32061	0.00020289	0.63141	0.00039958	632.8450339114971	99.898	0.44257	99.898	99.845	100.29	0					36	22	2	0	0	0	0.30798	1	25529	25529		17.113	10.907	1	99917			21547	2453	14215	14363	29358	29358					0.05380007651547203
TYPSPDIFLVI	11	Unmodified	_TYPSPDIFLVI_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.8465576171875	2	632.844822	1263.67509	0.48095	0.00030437	0.15166	9.5978E-05	0.63262	0.00040035	632.8448931118206	99.919	0.47405	99.962	99.845	100.32	0.042839					44	27	2	0	0	0	0.10024	2	25353	25353;25383		45.7	23.953	1	164370			21548	2453	14215	14363	29359;29360	29359					0.05380007651547203
TYPTLFQGW	9	Unmodified	_TYPTLFQGW_					0	0	0		nc|ENSG00000134490|Q24JQ0-2|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.3079833984375	2	556.7742	1111.53385	0.67798	0.00037748	-1.0733	-0.00059761	-0.39537	-0.00022013	556.77361606535	85.395	0.50806	85.395	85.221	85.729	0					28	22	2	0	0	0	0.15403	1	21108	21108		27.629	11.48	1	140080			21549	2673	14216	14364	29361	29361					-0.01745945931065762
TYPTLFQGW	9	Unmodified	_TYPTLFQGW_					0	0	0		nc|ENSG00000134490|Q24JQ0-2|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3087158203125	2	556.7742	1111.53385	0.88409	0.00049224	-1.6141	-0.0008987	-0.73003	-0.00040646	556.773293643768	85.366	0.56473	85.39	85.183	85.748	0.023125					38	22	2	0	0	0	0.15403	1	20975	20975		34.402	13.987	1	137290			21550	2673	14216	14364	29362	29362					-0.01745945931065762
TYPTYRVPSD	10	Unmodified	_TYPTYRVPSD_					0	0	0			REV__ENSG00000147206|ENST00000395065|NXF3	REV__ENSG00000147206|ENST00000395065|NXF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8088989257812	2	599.790578	1197.5666	0.46271	0.00027753	0.50022	0.00030003	0.96292	0.00057755	599.7907498831739	62.851	0.76947	62.851	62.575	63.345	0					41	29	2	0	0	0	0.36006	1	14295	14295		16.149	0	1	319700	+		21551	9564	14217	14365	29363	29363					-0.024277835988641527
TYPVLEEMF	9	Unmodified	_TYPVLEEMF_					0	0	0		sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7694702148438	2	564.767726	1127.5209	0.022829	1.2893E-05	2.3119	0.0013057	2.3348	0.0013186	564.7696276340351	45.008	0.82094	45.096	44.656	45.477	0.087543					66	31	4	0	0	0	0.25979	1	8769	8769		11.64	1.4569	1	230380			21552	13386	14218	14366	29364	29364					-0.03776145105439355
TYQDIFRDF	9	Unmodified	_TYQDIFRDF_					0	0	0		ENST00000472860.1_1_3:195000059-195000408:-|nuORF;ENSG00000114331|ENST00000326793|ACAP2	ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENST00000472860.1_1_3:195000059-195000408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.3017578125	2	602.785296	1203.55604	0.69509	0.00041899	0.38505	0.00023211	1.0801	0.0006511	602.7856184051396	70.266	0.63205	70.266	70.043	70.675	0					59	23	4	0	0	0	0.087932	1	16562	16562		35.08	22.037	1	558820			21553	1836	14219	14367	29365	29365					-0.037597662533016774
TYQDIFRDF	9	Unmodified	_TYQDIFRDF_					0	0	0		ENST00000472860.1_1_3:195000059-195000408:-|nuORF;ENSG00000114331|ENST00000326793|ACAP2	ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENST00000472860.1_1_3:195000059-195000408:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.7849731445312	2	602.785296	1203.55604	0.67117	0.00040457	0.3942	0.00023762	1.0654	0.00064219	602.7854806167788	70.153	0.70981	70.214	70.046	70.756	0.060562					53	29	3	0	0	0	0.11936	1	16400	16400		28.234	16.739	1	359020			21554	1836	14219	14367	29366	29366					-0.037597662533016774
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.2695922851562	2	548.269478	1094.5244	0.42629	0.00023372	-0.18371	-0.00010072	0.24258	0.000133	548.2694175464642	53.527	1.1947	53.527	53.234	54.429	0					153	45	5	0	0	0	1.126E-12	6	11387	11344;11387;11431;11480;11525;11581		179.28	106.32	1	6997200			21555	4832	14220	14368	29367;29368;29369;29370;29371;29372	29368					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2696533203125	2	548.269478	1094.5244	0.50537	0.00027708	-0.1092	-5.9869E-05	0.39617	0.00021721	548.2694035352168	53.509	1.1942	53.574	53.291	54.485	0.06543					161	51	4	0	0	0	2.3286E-13	7	11235	11194;11235;11280;11322;11364;11409;11460		192.32	119.35	1	5646000			21556	4832	14220	14368	29373;29374;29375;29376;29377;29378;29379	29374					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2820434570312	2	548.269478	1094.5244	0.67713	0.00037125	-0.6073	-0.00033296	0.069832	3.8287E-05	548.7708359297693	54.6	0.33104	54.665	54.556	54.887	0.065128					21	17	2	0	0	0	0.22821	1	11588	11588		19.362	4.9566	1	68071			21557	4832	14220	14368	29380	29380					-0.019077590072356543
TYQEFNHYL	9	Unmodified	_TYQEFNHYL_					0	0	0		ENSG00000102384|ENST00000682095|CENPI	ENSG00000102384|ENST00000682095|CENPI	ENSG00000102384|ENST00000682095|CENPI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.77685546875	2	607.77747	1213.54039	0.44968	0.0002733	-0.70232	-0.00042685	-0.25264	-0.00015355	607.7763331407141	53.208	0.55306	53.208	52.898	53.451	0					27	22	2	0	0	0	0.24767	1	11292	11292		13.042	7.3106	1	65358			21558	1311	14221	14369	29381	29381					-0.05784052770309245
TYQEFNHYL	9	Unmodified	_TYQEFNHYL_					0	0	0		ENSG00000102384|ENST00000682095|CENPI	ENSG00000102384|ENST00000682095|CENPI	ENSG00000102384|ENST00000682095|CENPI	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7783813476562	2	607.77747	1213.54039	0.7049	0.00042842	-0.75992	-0.00046186	-0.055012	-3.3435E-05	607.776772580406	53.176	0.27876	53.241	53.107	53.385	0.06543					15	13	2	0	0	0	0.27929	1	11153	11153		9.3831	1.2276	1	55275			21559	1311	14221	14369	29382	29382					-0.05784052770309245
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2	ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2814331054688	2	557.282389	1112.55022	-0.43258	-0.00024107	-0.41343	-0.0002304	-0.84601	-0.00047147	557.282025353505	41.615	1.0144	41.615	41.38	42.395	0					75	36	3	0	0	0	0.002813	5	7752	7752;7781;7817;7870;7975		110.79	63.044	1	242030			21560	1085	14222	14370	29383;29384;29385;29386;29387	29383					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2	ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2822265625	2	557.282389	1112.55022	-0.16524	-9.2085E-05	-0.40027	-0.00022307	-0.56551	-0.00031515	557.2820581791337	41.56	0.95881	41.65	41.332	42.291	0.089767					81	38	3	0	0	0	0.010553	4	7666	7588;7640;7666;7716		65.474	42.737	1	205800			21561	1085	14222	14370	29388;29389;29390;29391	29390					-0.001548647649542545
TYQLGFHSI	9	Unmodified	_TYQLGFHSI_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2719116210938	2	533.271824	1064.5291	0.30937	0.00016498	-0.18022	-9.6108E-05	0.12915	6.8873E-05	533.271360777573	56.323	0.51071	56.323	56.116	56.627	0					33	18	3	0	0	0	0.0046221	1	12228	12228		86.332	54.026	1	204990			21562	3106	14223	14371	29392	29392					-0.0005883007379452465
TYQLGFHSI	9	Unmodified	_TYQLGFHSI_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2717895507812	2	533.271824	1064.5291	0.36151	0.00019278	-0.33767	-0.00018007	0.023835	1.2711E-05	533.2712114001188	56.255	0.46508	56.321	56.161	56.626	0.066452					27	17	3	0	0	0	0.026809	2	12105	12105;12140		53.404	28.005	1	180920			21563	3106	14223	14371	29393;29394	29393					-0.0005883007379452465
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7852172851562	2	554.785296	1107.55604	0.089923	4.9888E-05	0.17227	9.5574E-05	0.2622	0.00014546	554.7853196189616	45.931	0.61619	45.931	45.675	46.291	0					44	21	3	0	0	0	0.1019	1	9115	9115		32.037	14.925	1	162060			21564	2334	14224	14372	29395	29395					0.006562337467130419
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7852783203125	2	554.785296	1107.55604	0.29962	0.00016622	0.14376	7.9756E-05	0.44338	0.00024598	554.7852719576175	45.804	0.66628	45.889	45.638	46.304	0.085617					50	25	3	0	0	0	0.31389	1	8992	8992		4.897	0	1	114650			21565	2334	14224	14372	29396	29396					0.006562337467130419
TYQRWQFTL	9	Unmodified	_TYQRWQFTL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8169555664062	2	621.81693	1241.61931	0.2133	0.00013263	-0.12363	-7.6876E-05	0.089665	5.5755E-05	621.8167381026794	64.56	1.7172	64.56	64.328	66.046	0					167	62	5	0	0	0	0.0022083	1	14752	14752		114.5	81.711	1	2983700			21566	4573	14225	14373	29397	29397					0.008162192546024016
TYQRWQFTL	9	Unmodified	_TYQRWQFTL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.81689453125	2	621.81693	1241.61931	0.22624	0.00014068	-0.048472	-3.0141E-05	0.17777	0.00011054	621.8167863849316	64.479	1.6538	64.548	64.287	65.941	0.068909					181	63	4	0	0	0	0.0038428	1	14596	14596		104.48	71.699	1	2580200			21567	4573	14225	14373	29398	29398					0.008162192546024016
TYRELVPPF	9	Unmodified	_TYRELVPPF_					0	0	0			REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B	REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.288818359375	2	561.303124	1120.5917	0.65146	0.00036567	-1.7294	-0.0009707	-1.0779	-0.00060503	561.3020814706938	67.093	0.77872	67.093	66.807	67.586	0					55	25	3	0	0	0	0.20358	1	15472	15472		18.146	3.3081	1	412940	+		21568	8789	14226	14374	29399	29399					0.036223159943801875
TYRFPCRVNR	10	Unmodified	_TYRFPCRVNR_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.895751953125	3	437.896146	1310.66661	-0.17564	-7.6911E-05	-2.0535	-0.00089921	-2.2291	-0.00097612	437.895410789609	40.052	0.72286	40.14	39.993	40.716	0.088566					56	27	3	0	0	0	0.45773	1	7174	7174		3.3196	0.68841	1	82886			21569	1153	14227	14375	29400	29400					0.0237017525396368
TYRFPCRVNR	10	Unmodified	_TYRFPCRVNR_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	437.896146	1310.66661	-0.056772	-2.486E-05	-2.8587	-0.0012518	-2.9155	-0.0012767	437.8949454813005	40.306	0.52692	40.306	40.096	40.623	0	0.082888	-0.00061437	NaN	3.3196	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38332			21570	1153	14227	14375							0.0237017525396368
TYRGPRHI	8	Unmodified	_TYRGPRHI_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7439270019531	2	500.277775	998.540997	-0.1672	-8.3645E-05	-0.97185	-0.0004862	-1.1391	-0.00056984	500.2771428691648	43.158	0.41751	43.158	42.999	43.416	0					26	13	3	0	0	0	0.3576	1	8221	8221		2.5775	0	1	106060			21571	248	14228	14376	29401	29401					0.04166831460031517
TYRQIKYF	8	Unmodified	_TYRQIKYF_					0	0	0		nc|ENSG00000105143|P48664-2|SLC1A6;ENSG00000105143|ENST00000594383|SLC1A6	nc|ENSG00000105143|P48664-2|SLC1A6	nc|ENSG00000105143|P48664-2|SLC1A6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.8158569335938	2	559.803291	1117.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.065	1	77.065	76.565	77.565	0								0	0	0	0.38796	1	18567	18567		14.582	0	1				21572	1450	14229	14377	29402	29402					0.03793735714225477
TYRRGDFTTF	10	Unmodified	_TYRRGDFTTF_					0	0	0			REV__ENSG00000188162|ENST00000399397|OTOG	REV__ENSG00000188162|ENST00000399397|OTOG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.876953125	3	421.875405	1262.60439	0.34662	0.00014623	1.592	0.00067162	1.9386	0.00081785	421.87591062039286	51.927	0.63298	51.927	51.501	52.134	0					30	21	2	0	0	0	0.43972	1	10781	10781		3.5871	0.26742	1	48118	+		21573	10760	14230	14378	29403	29403					-0.01641272613392175
TYRRGDFTTF	10	Unmodified	_TYRRGDFTTF_					0	0	0			REV__ENSG00000188162|ENST00000399397|OTOG	REV__ENSG00000188162|ENST00000399397|OTOG	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	421.875405	1262.60439	0.34662	0.00014623	1.592	0.00067162	1.9386	0.00081785	421.87591062039286	51.927	0.63298	51.927	51.501	52.134	0	0	0	NaN	3.5871	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48118	+		21574	10760	14230	14378							-0.01641272613392175
TYRSLLLVN	9	Unmodified	_TYRSLLLVN_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.8325805664062	2	539.816399	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.142	1	89.175	88.675	89.675	0.032257								0	0	0	0.25992	1	22083	22083		7.2892	0.56607	1				21575	4834	14231	14379	29404	29404					0.08254004885725408
TYRYHGHSI	9	Unmodified	_TYRYHGHSI_					0	0	0		PDHA2|p.M292I|1|0.23|ENSG00000163114|chr4:95841026-95841026|G/A|missense_variant	PDHA2|p.M292I|1|0.23|ENSG00000163114|chr4:95841026-95841026|G/A|missense_variant	PDHA2|p.M292I|1|0.23|ENSG00000163114|chr4:95841026-95841026|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.8319091796875	2	567.277972	1132.54139	0.36856	0.00020907	2.156	0.001223	2.5245	0.0014321	567.2786401664356	100.3	0.12675	100.3	100.19	100.32	0					9	6	2	0	0	0	0.24635	1	25631	25631		10.824	4.1008	1	48584			21576	7664	14232	14380	29405	29405					-0.019577936107680216
TYSCFWTKY	9	Unmodified	_TYSCFWTKY_					0	0	0		nc|ENSG00000102125|Q16635-9|TAFAZZIN;nc|ENSG00000102125|Q16635-8|TAFAZZIN;nc|ENSG00000102125|Q16635-7|TAFAZZIN;nc|ENSG00000102125|Q16635-6|TAFAZZIN;nc|ENSG00000102125|Q16635|TAFAZZIN;nc|ENSG00000102125|Q16635-4|TAFAZZIN;nc|ENSG00000102125|Q16635-2|TAFAZZIN;nc|ENSG00000102125|Q16635-5|TAFAZZIN;ENSG00000102125|ENST00000601016|TAFAZZIN	nc|ENSG00000102125|Q16635-9|TAFAZZIN	nc|ENSG00000102125|Q16635-9|TAFAZZIN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8023681640625	2	599.765517	1197.51648	0.42148	0.00025279	1.1589	0.00069509	1.5804	0.00094788	599.7665120774288	74.481	0.80449	74.53	74.342	75.147	0.048546					48	18	3	0	0	0	0.2229	1	17636	17636		19.257	2.1441	1	192540			21577	1297	14233	14381	29406	29406					-0.07437609528346911
TYSFYLGLL	9	Unmodified	_TYSFYLGLL_					0	0	0		tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.785888671875	2	538.786776	1075.559	0.34674	0.00018682	-2.1758	-0.0011723	-1.8291	-0.0009855	538.7855798043796	88.855	0.71461	88.855	88.701	89.416	0					49	28	2	0	0	0	0.22344	1	22160	22160		15.847	1.0089	1	220510			21578	13748	14234	14382	29407	29407					0.024241088715143633
TYSFYLGLL	9	Unmodified	_TYSFYLGLL_					0	0	0		tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7859497070312	2	538.786776	1075.559	0.48246	0.00025994	-2.4354	-0.0013121	-1.9529	-0.0010522	538.7855519920321	88.838	0.59747	88.87	88.703	89.301	0.032265					41	23	2	0	0	0	0.22344	1	21983	21983		15.847	1.0089	1	144650			21579	13748	14234	14382	29408	29408					0.024241088715143633
TYSIGFLRF	9	Unmodified	_TYSIGFLRF_					0	0	0		ENST00000474416.1_1_22:38622784-38627359:-|nuORF;ENST00000468535.5_1_7:1589488-1590526:-|nuORF;ENST00000474813.5_1_7:1589488-1595099:-|nuORF;ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B;ENSG00000164855|ENST00000297477|TMEM184A	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2578735351562	2	552.297842	1102.58113	0.41715	0.00023039	0.15138	8.3607E-05	0.56853	0.000314	552.2977370749278	77.349	0.78466	77.349	77.144	77.928	0					83	33	3	0	0	0	6.7292E-07	1	18672	18672		126.57	92.463	1	953180			21580	4037	14235	14383	29409	29409					0.03394333339952027
TYSIGFLRF	9	Unmodified	_TYSIGFLRF_					0	0	0		ENST00000474416.1_1_22:38622784-38627359:-|nuORF;ENST00000468535.5_1_7:1589488-1590526:-|nuORF;ENST00000474813.5_1_7:1589488-1595099:-|nuORF;ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B;ENSG00000164855|ENST00000297477|TMEM184A	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2579956054688	2	552.297842	1102.58113	0.59195	0.00032693	-0.27626	-0.00015258	0.31569	0.00017435	552.2975167439935	77.314	0.8229	77.348	77.203	78.026	0.034485					71	33	3	0	0	0	0.00048792	1	18512	18512		103.35	69.251	1	1103600			21581	4037	14235	14383	29410	29410					0.03394333339952027
TYSKYGRFCH	10	Unmodified	_TYSKYGRFCH_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4;DPY19L4|p.E689K|1|0.34|ENSG00000156162|chr8:94789803-94789803|G/A|missense_variant	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5751037597656	3	421.197602	1260.57098	0.32076	0.0001351	2.2171	0.00093385	2.5379	0.001069	421.1985468174456	35.851	0.48262	35.851	35.645	36.128	0					29	18	2	0	0	0	0.31803	1	6063	6063		1.5923	1.5923	1	28660			21582	3612	14236	14384	29411	29411					-0.048885976569181366
TYSKYGRFCH	10	Unmodified	_TYSKYGRFCH_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4;DPY19L4|p.E689K|1|0.34|ENSG00000156162|chr8:94789803-94789803|G/A|missense_variant	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.57568359375	3	421.197602	1260.57098	0.0055795	2.3501E-06	2.8434	0.0011977	2.849	0.0012	421.533205083785	35.739	0.68496	35.818	35.596	36.281	0.078831					28	25	2	0	0	0	0.31803	1	5857	5857		1.5923	1.5923	1	22247			21583	3612	14236	14384	29412	29412					-0.048885976569181366
TYSLFPQMQ	9	Unmodified	_TYSLFPQMQ_					0	0	0		nc|ENSG00000111728|Q92185-2|ST8SIA1	nc|ENSG00000111728|Q92185-2|ST8SIA1	nc|ENSG00000111728|Q92185-2|ST8SIA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7759399414062	2	557.765517	1113.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.671	1	98.671	98.171	99.171	0								0	0	0	0.23452	1	25142	25142		12.532	0.89125	1				21584	7484	14237	14385	29413	29413					-0.03573609528348243
TYSSCVILTF	10	Unmodified	_TYSSCVILTF_					0	0	0			REV__ENSG00000182771|ENST00000327946|GRID1	REV__ENSG00000182771|ENST00000327946|GRID1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7645263671875	2	567.281	1132.54745	0.58305	0.00033075	-2.6066	-0.0014787	-2.0236	-0.0011479	567.2796766898311	85.023	0.57075	85.047	84.742	85.312	0.023125					32	23	2	0	0	0	0.30149	1	20889	20889		14.838	3.198	1	123610	+		21585	10576	14238	14386	29414	29414					-0.013524562141356
TYSVCRCTH	9	Unmodified	_TYSVCRCTH_					0	0	0		nc|ENSG00000111452|Q6QNK2-2|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1;nc|ENSG00000111452|Q6QNK2-3|ADGRD1	nc|ENSG00000111452|Q6QNK2-2|ADGRD1	nc|ENSG00000111452|Q6QNK2-2|ADGRD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.2321166992188	2	535.231319	1068.44808	0.38466	0.00020588	1.1565	0.00061901	1.5412	0.00082489	535.2317376874397	88.863	0.7001	88.863	88.626	89.326	0					85	28	5	0	0	0	0.26684	1	22176	22176		10.824	1.4765	1	474410			21586	1706	14239	14387	29415	29415					-0.08340177379864144
TYSYSFFHF	9	Unmodified	_TYSYSFFHF_					0	0	0		ENSG00000111897|ENST00000339697|SERINC1;ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.80224609375	2	599.763832	1197.51311	0.43364	0.00026008	3.9491	0.0023685	4.3827	0.0026286	599.7664016767965	74.576	0.59024	74.576	74.37	74.961	0					54	21	3	0	0	0	0.20845	1	17772	17772		21.747	6.9084	1	291860			21587	1735	14240	14388	29416	29416					-0.0777453631071694
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3010864257812	2	581.300581	1160.58661	0.64422	0.00037448	-0.13203	-7.6746E-05	0.51219	0.00029774	581.300494176015	70.285	1.5099	70.285	69.905	71.415	0					181	54	5	0	0	0	0.0011184	9	16486	16438;16486;16532;16580;16628;16675;16732;16783;16792		121.53	79.579	1	9915800			21588	5237	14241	14389	29417;29418;29419;29420;29421;29422;29423;29424;29425	29418					0.012740121317847297
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.3009033203125	2	581.300581	1160.58661	0.69364	0.00040321	-0.10259	-5.9637E-05	0.59105	0.00034357	581.3005000571569	70.13	1.4599	70.19	69.888	71.348	0.060562					167	58	5	0	0	0	0.00041987	6	16306	16261;16306;16350;16395;16441;16496		133.05	83.498	1	8582300			21589	5237	14241	14389	29426;29427;29428;29429;29430;29431	29427					0.012740121317847297
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.301025390625	2	581.300581	1160.58661	0.72104	0.00041914	-0.33694	-0.00019586	0.3841	0.00022328	581.3003818023225	71.092	0.46838	71.151	70.91	71.378	0.058578					30	16	2	0	0	0	0.020768	4	16592	16544;16592;16616;16644		57.722	25.534	1	623130			21590	5237	14241	14389	29432;29433;29434;29435	29433					0.012740121317847297
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.2896728515625	2	581.300581	1160.58661	0.44451	0.0002584	0.11751	6.8309E-05	0.56203	0.00032671	581.3006112267078	71.575	1.0872	71.634	71.346	72.433	0.058578					112	38	5	0	0	0	0.16392	1	16950	16950		22.736	3.4793	1	2745900			21591	5237	14241	14389	29436	29436					0.012740121317847297
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.3034057617188	2	614.303852	1226.59315	-0.21815	-0.00013401	0.90815	0.00055788	0.69	0.00042387	614.3041076758336	46.467	0.33196	46.467	46.207	46.539	0					18	12	2	0	0	0	0.15743	1	9235	9235		38.615	27.12	1	149590			21592	941	14242	14390	29437	29437					-0.011080947075242875
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.80517578125	2	614.303852	1226.59315	-0.16398	-0.00010073	-0.28525	-0.00017523	-0.44922	-0.00027596	614.8050359875375	46.36	0.35761	46.446	46.215	46.573	0.085617					20	16	2	0	0	0	0.06541	1	9092	9092		53.404	40.362	1	195210			21593	941	14242	14390	29438	29438					-0.011080947075242875
TYTFKQPVF	9	Unmodified	_TYTFKQPVF_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8104858398438	2	565.797675	1129.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.507	1	93.507	93.007	94.007	0								0	0	0	0.21527	1	23571	23571		15.847	8.558	1				21594	4919	14243	14391	29439	29439					0.02118913620074636
TYTFKQPVF	9	Unmodified	_TYTFKQPVF_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7571411132812	2	565.797675	1129.5808	0.20446	0.00011568	-1.5054	-0.00085178	-1.301	-0.00073609	565.7972359726449	95.583	1.6379	95.583	94.287	95.925	0					94	71	2	0	0	0	0.18479	1	24047	24047		26.884	16.06	1	761550			21595	4919	14243	14391	29440	29440					0.02118913620074636
TYTFKQPVF	9	Unmodified	_TYTFKQPVF_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2796020507812	2	565.797675	1129.5808	0.19276	0.00010906	-1.0549	-0.00059686	-0.86214	-0.00048779	565.7971486443081	95.5	0.59851	95.539	95.239	95.838	0.038872					51	26	2	0	0	0	0.24635	1	23963	23963		10.824	3.5347	1	555030			21596	4919	14243	14391	29441	29441					0.02118913620074636
TYTMILNLL	9	Oxidation (M)	_TYTM(Oxidation (M))ILNLL_		TYTM(1)ILNLL		TYTM(92)ILNLL	0	0	1		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2992553710938	2	549.299193	1096.58383	0.25067	0.00013769	0.15877	8.7213E-05	0.40944	0.0002249	549.8007453091228	89.985	1.4905	89.985	89.244	90.734	0					104	58	3	0	0	0	0.0044607	2	22451	22342;22451		92.491	52.534	1	1062200			21597	5466	14244	14392	29442;29443	29443		309			0.03940420682579315
TYTNTHTH	8	Unmodified	_TYTNTHTH_					0	0	0		ENST00000494087.5_1_13:45780977-45781184:+|nuORF	ENST00000494087.5_1_13:45780977-45781184:+|nuORF	ENST00000494087.5_1_13:45780977-45781184:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.71990966796875	2	487.719956	973.425358	-0.36481	-0.00017793	0.25767	0.00012567	-0.10714	-5.2253E-05	487.7200325816016	24.834	0.65181	24.834	24.649	25.301	0					90	49	2	0	0	0	0.53026	1	2816	2816		7.9102	0	1	106560			21598	6823	14245	14393	29444	29444					-0.062417371814717626
TYTRQLNQ	8	Unmodified	_TYTRQLNQ_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|28|1|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|28|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2631225585938	2	512.26453	1022.51451	-0.3753	-0.00019225	-0.6853	-0.00035105	-1.0606	-0.00054331	512.2642230289797	15.866	0.14602	15.866	15.783	15.929	0					26	18	2	0	0	0	0.53894	1	626	626		2.0598	1.2661	1	21399	+		21599	12708	14246	14394	29445	29445					0.004150977780454923
TYTSNKVH	8	Unmodified	_TYTSNKVH_					0	0	0			REV__nc|ENSG00000039068|P12830-2|CDH1	REV__nc|ENSG00000039068|P12830-2|CDH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.2235412597656	2	475.240524	948.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.164	1	23.164	22.664	23.664	0								0	0	0	0.38822	1	2332	2332		2.3027	0	1		+		21600	8022	14247	14395	29446	29446					-0.009799761420026698
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7987670898438	2	533.798206	1065.58186	0.22722	0.00012129	3.0783	0.0016432	3.3055	0.0017645	533.7990754975008	52.062	0.50155	52.062	51.804	52.305	0					36	17	3	0	0	0	0.029291	1	10928	10928		51.63	15.503	1	102150			21601	1942	14248	14396	29447	29447					0.051691279890064834
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7982788085938	2	533.798206	1065.58186	0.45281	0.00024171	1.9457	0.0010386	2.3985	0.0012803	533.7995071959848	51.905	0.48823	51.972	51.829	52.318	0.067173					22	17	2	0	0	0	0.13341	2	10776	10758;10776		26.268	12.362	1	73235			21602	1942	14248	14396	29448;29449	29449					0.051691279890064834
TYTSYLDKF	9	Unmodified	_TYTSYLDKF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2771606445312	2	569.276772	1136.53899	0.35379	0.0002014	-0.079003	-4.4974E-05	0.27479	0.00015643	569.2766908309494	57.796	0.59381	57.796	57.597	58.191	0					45	20	3	0	0	0	0.0085356	2	12730	12730;12796		71.708	37.306	1	320740			21603	752	14249	14397	29450;29451	29450					-0.023816868590984086
TYTSYLDKF	9	Unmodified	_TYTSYLDKF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.276611328125	2	569.276772	1136.53899	0.28286	0.00016103	-0.25557	-0.00014549	0.027294	1.5538E-05	569.2766756213666	57.763	0.53099	57.832	57.577	58.108	0.068375					47	19	3	0	0	0	0.12214	1	12586	12586		27.629	12.791	1	305850			21604	752	14249	14397	29452	29452					-0.023816868590984086
TYTVKIVAI	9	Unmodified	_TYTVKIVAI_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.3102722167969	2	504.310418	1006.60628	0.13889	7.0045E-05	-0.53136	-0.00026797	-0.39246	-0.00019792	504.3098458422837	58.705	0.73791	58.775	58.561	59.299	0.070473					53	27	3	0	0	0	0.0093779	1	12828	12828		69.105	49.848	1	251350			21605	554	14250	14398	29453	29453					0.10324388142510088
TYTVRTFAL	9	Unmodified	_TYTVRTFAL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.2954711914062	2	536.295299	1070.57605	0.4483	0.00024042	-0.063197	-3.3892E-05	0.3851	0.00020653	536.2952479128318	57.276	1.1908	57.276	56.777	57.968	0					94	42	3	0	0	0	0.038996	1	12528	12528		45.74	5.7826	1	541490			21606	3127	14251	14399	29454	29454					0.04358029477339187
TYTVRTFAL	9	Unmodified	_TYTVRTFAL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.2953491210938	2	536.295299	1070.57605	0.6392	0.0003428	-0.12636	-6.7765E-05	0.51285	0.00027504	536.2951552818987	57.206	1.0049	57.274	56.797	57.802	0.068375					91	37	4	0	0	0	0.056368	1	12359	12359		41.956	1.9982	1	446570			21607	3127	14251	14399	29455	29455					0.04358029477339187
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8222045898438	2	560.821681	1119.62881	0.52846	0.00029637	0.12214	6.8497E-05	0.6506	0.00036487	560.8217238421751	63.207	1.691	63.207	62.941	64.632	0					138	61	3	0	0	0	5.7707E-13	9	14343	14300;14343;14386;14434;14482;14506;14508;14542;14615		187.3	122.06	1	3060100			21608	605;13422	14252	14400	29456;29457;29458;29459;29460;29461;29462;29463;29464	29457					0.07377987540144204
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8221435546875	2	560.821681	1119.62881	0.51879	0.00029095	0.11948	6.7005E-05	0.63827	0.00035796	560.8216803794977	63.156	1.7052	63.229	62.906	64.611	0.072701					149	64	4	0	0	0	1.8205E-09	9	14172	14131;14172;14212;14254;14264;14315;14351;14373;14460		173.69	108.45	1	2259100			21609	605;13422	14252	14400	29465;29466;29467;29468;29469;29470;29471;29472;29473	29466					0.07377987540144204
TYVEVWNDF	9	Unmodified	_TYVEVWNDF_					0	0	0		ENSG00000198858|ENST00000361574|R3HDM4	ENSG00000198858|ENST00000361574|R3HDM4	ENSG00000198858|ENST00000361574|R3HDM4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7666625976562	2	586.766571	1171.51859	0.88473	0.00051913	-0.082416	-4.8359E-05	0.80231	0.00047077	586.7663863226763	80.028	0.92232	80.054	79.851	80.773	0.026428					62	32	3	0	0	0	0.0042616	1	19322	19322		100.09	60.133	1	557570			21610	5420	14253	14401	29474	29474					-0.06030857518908306
TYVEVWNDF	9	Unmodified	_TYVEVWNDF_					0	0	0		ENSG00000198858|ENST00000361574|R3HDM4	ENSG00000198858|ENST00000361574|R3HDM4	ENSG00000198858|ENST00000361574|R3HDM4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	586.766571	1171.51859	1.0018	0.00058784	0.022775	1.3364E-05	1.0246	0.0006012	586.7660022249139	80.066	1.2088	80.066	79.815	81.023	0	0.0057551	0.00010687	NaN	100.09	78	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735720			21611	5420	14253	14401							-0.06030857518908306
TYVFICPVFF	10	Unmodified	_TYVFICPVFF_					0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3074340820312	2	618.312103	1234.60965	-0.2488	-0.00015383	-2.1325	-0.0013185	-2.3813	-0.0014724	618.3100843676791	72.822	1.0205	72.874	72.489	73.51	0.052567					68	37	3	0	0	0	0.3198	1	17180	17180		20.454	0	1	508680	+		21612	10546	14254	14402	29475	29475					0.0017331492485936906
TYVFLMVLF	9	Unmodified	_TYVFLMVLF_					0	0	0		ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1;nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1	ENSG00000138185|ENST00000371205|ENTPD1	ENSG00000138185|ENST00000371205|ENTPD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3110961914062	2	566.809196	1131.60384	0.26012	0.00014744	-0.0066033	-3.7428E-06	0.25351	0.00014369	566.8093147406591	101.8	0.59009	101.8	101.48	102.07	0					74	41	2	0	0	0	0.21398	1	26150	26150		16.942	2.3606	1	159640			21613	2901	14255	14403	29476	29476					0.04330216413200105
TYVFLMVLF	9	Unmodified	_TYVFLMVLF_					0	0	0		ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1;nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1	ENSG00000138185|ENST00000371205|ENTPD1	ENSG00000138185|ENST00000371205|ENTPD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8094482421875	2	566.809196	1131.60384	0.39323	0.00022289	-0.35882	-0.00020338	0.034419	1.9509E-05	566.809003383964	101.6	0.56963	101.65	101.49	102.06	0.042656					80	48	2	0	0	0	0.17247	1	25924	25924		21.747	4.8044	1	140700			21614	2901	14255	14403	29477	29477					0.04330216413200105
TYVFLMVLF	9	Unmodified	_TYVFLMVLF_					0	0	0		ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1;nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1	ENSG00000138185|ENST00000371205|ENTPD1	ENSG00000138185|ENST00000371205|ENTPD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8091430664062	2	566.809196	1131.60384	0.35761	0.0002027	-0.78446	-0.00044464	-0.42685	-0.00024194	566.8088717925829	102.92	0.84189	102.96	102.58	103.42	0.040909					163	75	3	0	0	0	0.21398	1	26320	26320		16.942	0	1	192890			21615	2901	14255	14403	29478	29478					0.04330216413200105
TYVGIGWLI	9	Unmodified	_TYVGIGWLI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.28997802734375	2	511.289485	1020.56442	0.26246	0.00013419	-0.43451	-0.00022216	-0.17205	-8.7966E-05	511.2892455502647	95.747	0.64546	95.747	95.541	96.187	0					39	32	2	0	0	0	0.033885	2	24246	24246;24305		48.346	26.599	1	246480			21616	2190	14256	14404	29479;29480	29479					0.054958324539938985
TYVGIGWLI	9	Unmodified	_TYVGIGWLI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2888488769531	2	511.289485	1020.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.09	1	96.09	95.59	96.59	0								0	0	0	0.21527	1	24357	24357		15.847	4.2069	1				21617	2190	14256	14404	29481	29481					0.054958324539938985
TYVGIGWLI	9	Unmodified	_TYVGIGWLI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.29010009765625	2	511.289485	1020.56442	0.28526	0.00014585	-0.30007	-0.00015342	-0.014812	-7.5733E-06	511.28930460376483	95.729	0.55655	95.768	95.604	96.16	0.038872					37	26	2	0	0	0	0.12809	2	24085	24085;24142		26.884	13.376	1	151500			21618	2190	14256	14404	29482;29483	29482					0.054958324539938985
TYVGIGWLI	9	Unmodified	_TYVGIGWLI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2887268066406	2	511.289485	1020.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.059	1	96.099	95.599	96.599	0.039772								0	0	0	0.17567	1	24190	24190		21.747	8.2388	1				21619	2190	14256	14404	29484	29484					0.054958324539938985
TYVGIGWLI	9	Unmodified	_TYVGIGWLI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.3836669921875	2	511.289485	1020.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.108	1	96.148	95.648	96.648	0.039772								0	0	0	0.2428	1	24205	24205		10.824	2.9138	1				21620	2190	14256	14404	29485	29485					0.054958324539938985
TYVGYGVLTLF	11	Unmodified	_TYVGYGVLTLF_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.8319091796875	2	616.831714	1231.64888	0.060231	3.7152E-05	0.11534	7.1147E-05	0.17557	0.0001083	616.8317111070338	97.606	0.54825	97.606	97.461	98.009	0					62	26	3	0	0	0	0.033776	1	24840	24840		61.602	41.187	1	279330			21621	1209	14257	14405	29486	29486					0.04231738480098102
TYVGYGVLTLF	11	Unmodified	_TYVGYGVLTLF_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	616.831714	1231.64888	0.10259	6.3281E-05	0.10178	6.2779E-05	0.20437	0.00012606	616.8316699056036	97.658	0.83215	97.699	97.417	98.249	0.040855	0.046505	-1.1534E-05	NaN	61.602	78	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206390			21622	1209	14257	14405							0.04231738480098102
TYVHSSATI	9	Unmodified	_TYVHSSATI_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.74822998046875	2	489.748182	977.481811	-0.16773	-8.2147E-05	-0.98532	-0.00048256	-1.1531	-0.00056471	489.74801549136123	32.761	0.76385	32.761	32.614	33.378	0					54	32	2	0	0	0	0.22344	1	5153	5153		15.847	4.2069	1	64805			21623	1049	14258	14406	29487	29487					-0.007831093447975945
TYVHSSATI	9	Unmodified	_TYVHSSATI_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.748046875	2	489.748182	977.481811	-0.13054	-6.3931E-05	-1.2749	-0.0006244	-1.4055	-0.00068833	489.7479505041218	32.71	0.58273	32.784	32.586	33.168	0.07378					46	26	2	0	0	0	0.12809	1	4986	4986		26.884	5.137	1	65928			21624	1049	14258	14406	29488	29488					-0.007831093447975945
TYVKKKEFD	9	Unmodified	_TYVKKKEFD_					0	0	0			REV__nc|ENSG00000113361|P55285-2|CDH6	REV__nc|ENSG00000113361|P55285-2|CDH6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2925415039062	2	579.313689	1156.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.18	1	101.22	100.72	101.72	0.042656								0	0	0	0.27427	1	25751	25751		4.3292	0	1		+		21625	8740	14259	14407	29489	29489					0.040782813032365084
TYVLRLEAI	9	Unmodified	_TYVLRLEAI_					0	0	0		nc|ENSG00000187049|Q9P0N5-2|TMEM216;ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2787475585938	2	539.318774	1076.623	0.60699	0.00032736	-0.48539	-0.00026178	0.1216	6.5583E-05	539.3182610001311	64.751	0.24381	64.82	64.658	64.902	0.068916					12	8	2	0	0	0	0.2094	1	14648	14648		22.736	5.794	1	47779			21626	5107	14260	14408	29490	29490					0.08774889028472899
TYVMETWLL	9	Unmodified	_TYVMETWLL_					0	0	0			REV__ENST00000336578.5_1_10:70056084-70056117:-|nuORF	REV__ENST00000336578.5_1_10:70056084-70056117:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7976684570312	2	578.291368	1154.56818	0.3351	0.00019378	3.5757	0.0020678	3.9108	0.0022616	578.2933191948295	94.865	0.90472	94.904	94.545	95.45	0.038872					57	37	2	0	0	0	0.12809	1	23823	23823		26.884	0.61551	1	179550	+		21627	11442	14261	14409	29491	29491					-0.0029186583444698044
TYVNRGRR	8	Unmodified	_TYVNRGRR_					0	0	0		nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.28778076171875	2	511.286131	1020.55771	0.18801	9.6128E-05	1.8711	0.00095665	2.0591	0.0010528	511.28738993605134	49.359	0.47864	49.359	49.143	49.621	0					26	16	2	0	0	0	0.50159	1	10130	10130		12.532	1.7076	1	51022			21628	321	14262	14410	29492	29492					0.04825332346001687
TYVNRGRR	8	Unmodified	_TYVNRGRR_					0	0	0		nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	511.286131	1020.55771	0.14115	7.2168E-05	2.6896	0.0013751	2.8307	0.0014473	511.28777477104137	49.327	0.53248	49.404	49.216	49.749	0.076607	0.022181	0.00059845	NaN	12.532	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48847			21629	321	14262	14410							0.04825332346001687
TYVPNIDRI	9	Unmodified	_TYVPNIDRI_					0	0	0		nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7987060546875	2	545.798206	1089.58186	0.62211	0.00033955	-0.14077	-7.6834E-05	0.48134	0.00026271	545.79810714195	54.214	0.48078	54.214	53.987	54.467	0					38	17	3	0	0	0	0.1646	1	11594	11594		22.658	7.8198	1	338960			21630	2429	14263	14411	29493	29493					0.04065127988974382
TYVPNIDRI	9	Unmodified	_TYVPNIDRI_					0	0	0		nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7991943359375	2	545.798206	1089.58186	0.54417	0.00029701	-0.21537	-0.00011755	0.32881	0.00017946	545.7981317846032	54.214	0.40308	54.279	54.063	54.466	0.065128					41	15	4	0	0	0	0.19661	1	11450	11450		21.59	6.7519	1	277830			21631	2429	14263	14411	29494	29494					0.04065127988974382
TYVPWPLML	9	Oxidation (M)	_TYVPWPLM(Oxidation (M))L_		TYVPWPLM(1)L		TYVPWPLM(97)L	0	0	1		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2967529296875	2	568.296453	1134.57835	0.24622	0.00013992	-0.14346	-8.1525E-05	0.10276	5.8398E-05	568.2965080329354	94.979	0.87884	94.979	94.612	95.491	0					107	35	4	0	0	0	0.0043406	1	24020	24020		97.075	73.926	1	1373900			21632	4307	14264	14412	29495	29495		260			0.01644741890777368
TYVPWPLML	9	Oxidation (M)	_TYVPWPLM(Oxidation (M))L_		TYVPWPLM(1)L		TYVPWPLM(97)L	0	0	1		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2966918945312	2	568.296453	1134.57835	0.34292	0.00019488	0.090044	5.1171E-05	0.43297	0.00024605	568.2964056150711	94.003	0.89797	94.042	93.793	94.691	0.038086					118	41	4	0	0	0	0.0043406	1	23578	23578		97.075	73.926	1	1305600			21633	4307	14264	14412	29496	29496		260			0.01644741890777368
TYVPWPLML	9	Oxidation (M)	_TYVPWPLM(Oxidation (M))L_		TYVPWPLM(1)L		TYVPWPLM(97)L	0	0	1		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2966918945312	2	568.296453	1134.57835	0.19594	0.00011135	-0.041402	-2.3529E-05	0.15453	8.7821E-05	568.2965556964882	94.979	0.97952	95.018	94.524	95.503	0.038864					104	40	3	0	0	0	0.0043406	1	23864	23864		97.075	73.926	1	999950			21634	4307	14264	14412	29497	29497		260			0.01644741890777368
TYVPWPLML	9	Oxidation (M)	_TYVPWPLM(Oxidation (M))L_					0	0	1		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	568.296453	1134.57835	0.39232	0.00022295	0.055861	3.1746E-05	0.44818	0.0002547	568.2964116559822	93.986	0.91574	93.986	93.77	94.685	0	-0.027934	-1.6475E-05	NaN	97.075	119	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1357600			21635	4307	14264	14412				260			0.01644741890777368
TYVPWPLML	9	Unmodified	_TYVPWPLML_					0	0	0		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2991943359375	2	560.298996	1118.58344	0.43911	0.00024603	-0.28176	-0.00015787	0.15735	8.8162E-05	560.298888697292	101.05	0.70018	101.05	100.74	101.44	0					88	40	3	0	0	0	0.18364	1	25815	25815		20.454	13.164	1	129020			21636	4307	14264	14413	29498	29498					0.02889045753386199
TYVPWPLML	9	Unmodified	_TYVPWPLML_					0	0	0		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2997436523438	2	560.298996	1118.58344	0.59471	0.00033321	-0.045698	-2.5605E-05	0.54901	0.00030761	560.2986980946145	100.96	0.68849	101	100.76	101.45	0.042831					63	41	2	0	0	0	0.22344	2	25640	25640;25809		15.847	9.6414	1	109620			21637	4307	14264	14413	29499;29500	29499					0.02889045753386199
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.7844848632812	2	534.784233	1067.55391	0.32291	0.00017269	0.22143	0.00011842	0.54435	0.00029111	534.7843146459596	89.024	1.1432	89.024	88.764	89.908	0					125	44	4	0	0	0	0.0005281	3	22226	22185;22226;22270		131.27	89.173	1	1501300			21638	2253	14265	14414	29501;29502;29503	29502					0.02283805008892159
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7843627929688	2	534.784233	1067.55391	0.5071	0.00027119	-0.054007	-2.8882E-05	0.4531	0.00024231	534.7841370750506	89.042	1.1853	89.074	88.772	89.957	0.032265					121	45	4	0	0	0	0.0005281	3	22053	22008;22053;22096		131.27	89.173	1	1467700			21639	2253	14265	14414	29504;29505;29506	29505					0.02283805008892159
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1	CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant	CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2799072265625	2	522.279649	1042.54475	0.30704	0.00016036	0.2002	0.00010456	0.50724	0.00026492	522.2796932950888	53.356	1.3122	53.356	53.139	54.451	0					85	50	2	0	0	0	0.00087611	2	11332	11332;11476		125.53	69.352	1	983420			21640	125	14266	14415	29507;29508	29507					0.02517456443251831
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1	CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant	CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.2797241210938	2	522.279649	1042.54475	0.34192	0.00017858	0.1967	0.00010273	0.53861	0.00028131	522.2796583157868	53.342	0.83857	53.407	53.169	54.007	0.06543					103	38	3	0	0	0	0.0022565	2	11216	11216;11269		114.2	58.025	1	964010			21641	125	14266	14415	29509;29510	29509					0.02517456443251831
TYVSTITVPLR	11	Unmodified	_TYVSTITVPLR_					0	0	0		nc|ENSG00000127870|Q9Y252-2|RNF6;ENSG00000127870|ENST00000381588|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8606262207031	3	417.243206	1248.70779	-0.25415	-0.00010604	0.78832	0.00032892	0.53417	0.00022288	417.2435376145576	30.855	1.1811	30.929	30.294	31.475	0.073782					77	65	2	0	0	0	0.31101	1	4290	4290		0.45452	0.45452	1	26740			21642	2375	14267	14416	29511	29511					0.09338214774402331
TYVSTITVPLR	11	Unmodified	_TYVSTITVPLR_					0	0	0		nc|ENSG00000127870|Q9Y252-2|RNF6;ENSG00000127870|ENST00000381588|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	417.243206	1248.70779	0.060902	2.5411E-05	2.4135	0.001007	2.4744	0.0010324	417.24466968330955	30.683	0.088694	30.683	30.645	30.734	0	-0.12303	0.0020152	NaN	0.45452	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4295.4			21643	2375	14267	14416							0.09338214774402331
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2575073242188	2	555.295496	1108.57644	0.3542	0.00019669	-1.1092	-0.00061593	-0.75499	-0.00041925	555.2951097410215	48.573	0.45977	48.573	48.311	48.77	0					26	15	2	0	0	0	0.10323	1	9891	9891		47.732	20.103	1	138360			21644	2346	14268	14417	29512	29512					0.026494044065202615
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2576293945312	2	555.295496	1108.57644	0.50568	0.0002808	-1.0814	-0.0006005	-0.57574	-0.0003197	555.294909714888	48.474	0.42849	48.554	48.325	48.754	0.080029					23	13	2	0	0	0	0.11372	1	9735	9735		46.022	19.754	1	123230			21645	2346	14268	14417	29513	29513					0.026494044065202615
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7999877929688	2	524.799883	1047.58521	0.36361	0.00019082	0.044985	2.3608E-05	0.40859	0.00021443	524.7998201163507	85.707	1.0471	85.707	85.482	86.529	0					124	43	4	0	0	0	0.0027323	5	21211	21166;21211;21259;21305;21351		111.29	59.019	1	1667600			21646	1829	14269	14418	29514;29515;29516;29517;29518	29515					0.06332378042998243
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.800048828125	2	524.799883	1047.58521	0.41309	0.00021679	0.044635	2.3424E-05	0.45772	0.00024021	524.7998245083159	85.679	1.0922	85.704	85.471	86.563	0.025169					105	41	4	0	0	0	1.4799E-05	5	21045	21000;21045;21091;21135;21194		144.35	73.217	1	1599400			21647	1829	14269	14418	29519;29520;29521;29522;29523	29520					0.06332378042998243
TYVVPSRATP	10	Unmodified	_TYVVPSRATP_					0	0	0			REV__NUP153|p.T632R|1|0.12|ENSG00000124789|chr6:17637722-17637722|G/C|missense_variant	REV__NUP153|p.T632R|1|0.12|ENSG00000124789|chr6:17637722-17637722|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.27197265625	2	545.798206	1089.58186	0.19896	0.00010859	0.78786	0.00043001	0.98682	0.0005386	545.7985180057196	52.577	0.41693	52.577	52.396	52.813	0					19	13	2	0	0	0	0.31731	1	11090	11090		6.2058	0.47393	1	112920	+		21648	12937	14270	14419	29524	29524					0.04065127988997119
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.27685546875	2	575.276772	1148.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.171	1	73.171	72.671	73.671	0								0	0	0	5.010999999999999E-59	1	17373	17373		232.37	162.04	1				21649	2164	14271	14420	29525	29525					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.2666625976562	2	575.276772	1148.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.774	1	77.774	77.274	78.274	0								0	0	0	0.19832	1	18785	18785		18.373	3.1246	1				21650	2164	14271	14420	29526	29526					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.79296875	2	575.276772	1148.53899	0.37222	0.00021413	0.59724	0.00034358	0.96946	0.00055771	575.2769178413153	75.18	0.62476	75.224	74.995	75.619	0.044037					34	22	2	0	0	0	0.013066	1	17882	17882		63.227	37.207	1	268950			21651	2164	14271	14420	29527	29527					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.793212890625	2	575.276772	1148.53899	0.36027	0.00020726	0.73169	0.00042092	1.092	0.00062818	575.2768552363261	76.389	0.22038	76.428	76.387	76.608	0.03923					10	7	2	0	0	0	0.11816	1	18250	18250		28.495	15.452	1	90709			21652	2164	14271	14420	29528	29528					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.277099609375	2	575.276772	1148.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.095	1	73.147	72.647	73.647	0.052574								0	0	0	2.1212E-47	1	17196	17196		216.57	136.97	1				21653	2164	14271	14420	29529	29529					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.27783203125	2	575.276772	1148.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.619	1	75.664	75.164	76.164	0.044037								0	0	0	0.087657	1	17966	17966		37.075	24.032	1				21654	2164	14271	14420	29530	29530					-0.02933686859091722
TYVYMCHVGV	10	Unmodified	_TYVYMCHVGV_					0	0	0		L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense;chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense	L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense	L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2679443359375	2	586.26737	1170.52019	0.29258	0.00017153	0.52536	0.000308	0.81794	0.00047953	586.2676312595411	73.315	1.2033	73.315	73.084	74.287	0					91	43	3	0	0	0	0.19659	4	17404	17404;17531;17589;17645		34.102	12.356	1	2215200			21655	163	14272	14421	29531;29532;29533;29534	29531					-0.05825263026167704
TYVYMCHVGV	10	Unmodified	_TYVYMCHVGV_					0	0	0		L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense;chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense	L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense	L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.267822265625	2	586.26737	1170.52019	0.60985	0.00035753	0.37677	0.00022089	0.98662	0.00057842	586.2675694821481	73.369	1.1672	73.422	73.093	74.261	0.052567					101	44	3	0	0	0	0.19659	4	17234	17234;17341;17418;17473		34.102	8.558	1	1623700			21656	163	14272	14421	29535;29536;29537;29538	29535					-0.05825263026167704
TYWEPMHG	8	Unmodified	_TYWEPMHG_					0	0	0			REV__ENSG00000164741|ENST00000276297|DLC1	REV__ENSG00000164741|ENST00000276297|DLC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7789001464844	2	510.715827	1019.4171	-0.12384	-6.3246E-05	0.0030903	1.5783E-06	-0.12075	-6.1668E-05	511.2162930074749	28.411	0.076309	28.493	28.436	28.512	0.082132					5	3	2	0	0	0	0.3576	1	3706	3706		2.5775	0	1	3860.3	+		21657	10004	14273	14422	29539	29539					-0.09183007422450373
TYWGLFEL	8	Unmodified	_TYWGLFEL_					0	0	0			REV__ENSG00000168090|ENST00000303904|COPS6	REV__ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.27734375	2	514.758018	1027.50148	0.41204	0.0002121	0.22842	0.00011758	0.64047	0.00032969	514.7580286018034	91.073	0.67288	91.073	90.834	91.507	0					52	23	3	0	0	0	0.52924	1	22913	22913		8.5933	8.5933	1	779300	+		21658	10144	14274	14423	29540	29540					-0.011167333340381447
TYWGLFEL	8	Unmodified	_TYWGLFEL_					0	0	0			REV__ENSG00000168090|ENST00000303904|COPS6	REV__ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2772827148438	2	514.758018	1027.50148	0.158	8.1332E-05	0.46576	0.00023975	0.62376	0.00032109	514.7581401180581	90.996	0.7009	91.032	90.797	91.498	0.035446					62	24	4	0	0	0	0.52924	1	22762	22762		8.5933	8.5933	1	849510	+		21659	10144	14274	14423	29541	29541					-0.011167333340381447
TYYAQEERD	9	Unmodified	_TYYAQEERD_					0	0	0			REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7640991210938	2	587.754192	1173.49383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.956	1	42.956	42.456	43.456	0								0	0	0	0.26747	1	8185	8185		5.7319	0	1		+		21660	7754	14275	14424	29542	29542					-0.08597537392279264
TYYNKFTI	8	Unmodified	_TYYNKFTI_					0	0	0			REV__nc|ENSG00000145029|Q9BSH3-2|NICN1	REV__nc|ENSG00000145029|Q9BSH3-2|NICN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.267333984375	2	525.26875	1048.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.31	1	107.34	106.84	107.84	0.025711								0	0	0	0.38822	1	27492	27492		2.3027	0.4585	1		+		21661	9513	14276	14425	29543	29543					0.0006265169467951637
TYYRGFLTL	9	Unmodified	_TYYRGFLTL_					0	0	0		ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3031005859375	2	567.303124	1132.5917	0.64183	0.00036411	-0.78579	-0.00044578	-0.14396	-8.1669E-05	567.3026964639145	65.713	1.1858	65.713	65.421	66.607	0					102	43	4	0	0	0	0.0056336	2	15080	15080;15133		80.676	44.549	1	977220			21662	2996	14277	14426	29544;29545	29544					0.030703159943641367
TYYRGFLTL	9	Unmodified	_TYYRGFLTL_					0	0	0		ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.302978515625	2	567.303124	1132.5917	0.48376	0.00027444	-0.79317	-0.00044997	-0.30941	-0.00017553	567.3026939799998	65.615	1.2556	65.682	65.45	66.706	0.066872					128	49	4	0	0	0	0.0085356	2	14966	14921;14966		71.708	42.626	1	1225900			21663	2996	14277	14426	29546;29547	29547					0.030703159943641367
TYYRIFKVAR	10	Unmodified	_TYYRIFKVAR_					0	0	0		nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2	nc|ENSG00000113749|P25021|HRH2	nc|ENSG00000113749|P25021|HRH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.587158203125	3	439.587307	1315.74009	-0.38293	-0.00016833	0.23022	0.0001012	-0.15271	-6.7131E-05	439.5873059790301	40.922	0.67566	41.011	40.837	41.513	0.089645					47	25	3	0	0	0	0.45773	1	7450	7450		3.3196	0	1	91915			21664	1815	14278	14427	29548	29548					0.0948504696807504
TYYRIFKVAR	10	Unmodified	_TYYRIFKVAR_					0	0	0		nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2	nc|ENSG00000113749|P25021|HRH2	nc|ENSG00000113749|P25021|HRH2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	439.587307	1315.74009	-0.2987	-0.00013131	-0.35279	-0.00015508	-0.65149	-0.00028639	439.5870740155836	41.158	0.60575	41.158	40.881	41.487	0	0.073107	-0.00035953	NaN	3.3196	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52661			21665	1815	14278	14427							0.0948504696807504
UKNQAKKUE	9	Unmodified	_UKNQAKKUE_					0	0	0		ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7550659179688	2	574.199245	1146.38394	0.16355	9.3909E-05	2.5448	0.0014612	2.7084	0.0015552	574.2006066079388	89.624	0.26382	89.658	89.462	89.726	0.034065					10	9	2	0	0	0	0.25644	1	22233	22233		0	0	0	53337			21666	5686	14279	14428	29549	29549					-0.18339985330840136
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000489392.1_1_9:136216448-136216496:+|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	447.7372131347656	2	447.737617	893.460681	-0.015383	-6.8877E-06	-0.86348	-0.00038661	-0.87887	-0.0003935	447.73718011800236	28.191	1.1473	28.191	27.994	29.141	0					128	60	4	0	0	0	0.0043406	2	3793	3754;3793		97.075	54.98	1	881440			21667	6421	14280	14429	29550;29551	29551					0.009689253463307068
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000489392.1_1_9:136216448-136216496:+|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	447.73712158203125	2	447.737617	893.460681	-0.23188	-0.00010382	-0.62999	-0.00028207	-0.86187	-0.00038589	447.7373007553682	28.099	1.0264	28.181	27.969	28.995	0.082134					139	62	4	0	0	0	0.0043406	2	3598	3598;3639		97.075	52.668	1	756410			21668	6421	14280	14429	29552;29553	29552					0.009689253463307068
VAAEVAGAGR	10	Unmodified	_VAAEVAGAGR_					0	0	0		ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF	ENST00000233615.6_2_2:74685568-74685718:+|nuORF	ENST00000233615.6_2_2:74685568-74685718:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.7478942871094	2	450.748516	899.482479	-0.093031	-4.1934E-05	-0.82175	-0.0003704	-0.91478	-0.00041234	450.748022069834	24.557	0.38376	24.557	24.421	24.805	0					63	27	3	0	0	0	0.28859	2	2703	2703;2746		23.79	0	1	90488			21669	5816	14281	14430	29554;29555	29554					0.028717300948983393
VAAEVAGAGR	10	Unmodified	_VAAEVAGAGR_					0	0	0		ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF	ENST00000233615.6_2_2:74685568-74685718:+|nuORF	ENST00000233615.6_2_2:74685568-74685718:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.74810791015625	2	450.748516	899.482479	-0.12672	-5.7117E-05	-0.55365	-0.00024956	-0.68037	-0.00030668	450.74813801769005	24.38	0.37162	24.48	24.338	24.709	0.099739					80	33	3	0	0	0	0.24525	2	2558	2523;2558		28.495	4.7047	1	74878			21670	5816	14281	14430	29556;29557	29557					0.028717300948983393
VAAGSYQRF	9	Unmodified	_VAAGSYQRF_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7558288574219	2	499.756341	997.498129	0.13224	6.6086E-05	0.012484	6.239E-06	0.14472	7.2325E-05	499.75608754149755	35.262	0.422	35.262	35.088	35.51	0					35	14	3	0	0	0	0.2125	1	5866	5866		17.113	7.039	1	60451			21671	3777	14282	14431	29558	29558					-0.0007198338804528248
VAAGSYQRF	9	Unmodified	_VAAGSYQRF_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.75628662109375	2	499.756341	997.498129	0.16233	8.1127E-05	-0.049029	-2.4503E-05	0.1133	5.6625E-05	499.756190214618	35.231	0.37074	35.31	35.142	35.513	0.078827					23	14	2	0	0	0	0.12214	1	5722	5722		27.629	12.791	1	65145			21672	3777	14282	14431	29559	29559					-0.0007198338804528248
VAALRPLGATF	11	Unmodified	_VAALRPLGATF_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7693481445312	2	558.332216	1114.64988	0.52655	0.00029399	-0.36013	-0.00020107	0.16642	9.2917E-05	558.3319698725394	62.202	0.77301	62.275	62.111	62.884	0.073421					46	26	3	0	0	0	0.31057	1	14074	14074		5.2969	3.2371	1	393860			21673	3779	14283	14432	29560	29560					0.09713997639642002
VAALRPLGATF	11	Unmodified	_VAALRPLGATF_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	558.332216	1114.64988	0.47915	0.00026752	-0.15592	-8.7055E-05	0.32323	0.00018047	558.331978908742	62.274	0.62574	62.274	62.096	62.722	0	-0.00087511	0.00010868	NaN	5.2969	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348050			21674	3779	14283	14432							0.09713997639642002
VAAPADPEM	9	Oxidation (M)	_VAAPADPEM(Oxidation (M))_		VAAPADPEM(1)		VAAPADPEM(42)	0	0	1		ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.7076721191406	2	458.707668	915.400783	0.13779	6.3204E-05	0.12374	5.6759E-05	0.26152	0.00011996	458.70761746526904	34.426	0.54501	34.426	34.231	34.776	0					41	22	2	0	0	0	0.05573	1	5643	5643		42.095	21.641	1	117530			21675	501	14284	14433	29561	29561		24			-0.06030133379204017
VAATVQNRF	9	Unmodified	_VAATVQNRF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.75628662109375	2	503.277441	1004.54033	0.03116	1.5682E-05	-0.16363	-8.235E-05	-0.13247	-6.6668E-05	503.27735648940535	35.066	0.65279	35.066	34.884	35.537	0					46	22	3	0	0	0	0.04667	1	5811	5811		62.573	41.036	1	94479			21676	2860	14285	14434	29562	29562					0.038239920203295696
VAATVQNRF	9	Unmodified	_VAATVQNRF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7562561035156	2	503.277441	1004.54033	0.08172	4.1128E-05	-0.23748	-0.00011952	-0.15576	-7.8392E-05	503.27737659526946	35.033	0.60627	35.112	34.933	35.539	0.078827					47	24	3	0	0	0	0.18759	1	5664	5664		27.629	12.791	1	108170			21677	2860	14285	14434	29563	29563					0.038239920203295696
VAAVITITF	9	Unmodified	_VAAVITITF_					0	0	0		ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.783935546875	2	467.784036	933.553519	0.40746	0.0001906	-0.30075	-0.00014069	0.1067	4.9914E-05	467.7837366137772	82.706	0.47582	82.706	82.482	82.957	0					32	16	3	0	0	0	0.024893	1	20266	20266		54.774	10.915	1	429940			21678	2611	14286	14435	29564	29564					0.08408430079691698
VAAVITITF	9	Unmodified	_VAAVITITF_					0	0	0		ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.78411865234375	2	467.784036	933.553519	0.081282	3.8022E-05	0.10296	4.8162E-05	0.18424	8.6184E-05	467.78396743085875	82.603	0.6189	82.625	82.424	83.043	0.021744					45	21	3	0	0	0	0.0053304	2	20077	20077;20129		81.613	25.436	1	404440			21679	2611	14286	14435	29565;29566	29565					0.08408430079691698
VAAYFGHVSL	10	Unmodified	_VAAYFGHVSL_					0	0	0		ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.283203125	2	532.282192	1062.54983	0.45447	0.0002419	0.1289	6.8611E-05	0.58337	0.00031052	532.2821684669385	62.052	0.62572	62.126	61.825	62.451	0.073421					41	26	2	0	0	0	0.28878	1	13832	13832		25.399	10.151	1	181250			21680	4378	14287	14436	29567	29567					0.021057603058579843
VADENLKAF	9	Unmodified	_VADENLKAF_					0	0	0		ENST00000575992.1_1_17:79632233-79633184:-|nuORF;ENST00000575963.1_1_17:79632233-79632626:-|nuORF;ENSG00000204237|ENST00000374741|OXLD1;ENST00000571503.1_2_17:79632233-79633555:-|nuORF	ENST00000575992.1_1_17:79632233-79633184:-|nuORF	ENST00000575992.1_1_17:79632233-79633184:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.76446533203125	2	503.763832	1005.51311	0.49557	0.00024965	0.01003	5.053E-06	0.5056	0.0002547	503.7638220105463	54.253	0.2696	54.319	54.157	54.427	0.065128					17	9	2	0	0	0	0.29105	1	11487	11487		7.9102	0	1	95663			21681	5456	14288	14437	29568	29568					0.010574636892897615
VADPVEAVL	9	Unmodified	_VADPVEAVL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.7558288574219	2	456.755475	911.496398	0.61941	0.00028292	-0.34183	-0.00015613	0.27758	0.00012679	456.7552515028563	69.177	1.0274	69.177	68.934	69.961	0					66	35	3	0	0	0	0.015682	3	16126	16126;16172;16226		61.357	13.012	1	1394000			21682	2854	14289	14438	29569;29570;29571	29569					0.037109628033249464
VADPVEAVL	9	Unmodified	_VADPVEAVL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.75543212890625	2	456.755475	911.496398	0.10733	4.9024E-05	0.21299	9.7284E-05	0.32032	0.00014631	456.75548781640083	69.145	1.0977	69.207	68.875	69.973	0.062126					81	40	3	0	0	0	0.0064512	4	15992	15945;15992;16036;16091		78.149	20.678	1	1583500			21683	2854	14289	14438	29572;29573;29574;29575	29573					0.037109628033249464
VADPYVVIM	9	Oxidation (M)	_VADPYVVIM(Oxidation (M))_		VADPYVVIM(1)		VADPYVVIM(57)	0	0	1		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.76483154296875	2	511.764986	1021.51542	0.46891	0.00023997	0.047042	2.4074E-05	0.51595	0.00026405	511.7649140288388	63.06	1.217	63.06	62.809	64.026	0					92	45	3	0	0	0	0.021119	3	14264	14264;14307;14355		57.471	40.529	1	1319600			21684	774	14290	14439	29576;29577;29578	29576		43			0.0055217610274667095
VADPYVVIM	9	Oxidation (M)	_VADPYVVIM(Oxidation (M))_		VADPYVVIM(1)		VADPYVVIM(48)	0	0	1		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.7647705078125	2	511.764986	1021.51542	0.6566	0.00033603	-0.38772	-0.00019842	0.26889	0.00013761	511.76470536272205	65.361	1.586	65.361	64.842	66.428	0					124	57	3	0	0	0	0.033885	3	14981	14928;14981;15090		48.346	31.404	1	536520			21685	774	14290	14439	29579;29580;29581	29580		43			0.0055217610274667095
VADPYVVIM	9	Oxidation (M)	_VADPYVVIM(Oxidation (M))_		VADPYVVIM(1)		VADPYVVIM(57)	0	0	1		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.76519775390625	2	511.764986	1021.51542	0.40297	0.00020623	-0.081059	-4.1483E-05	0.32191	0.00016474	511.7649072492471	62.989	1.2236	63.062	62.805	64.029	0.072701					93	47	3	0	0	0	0.021119	3	14145	14098;14145;14199		57.471	40.529	1	1110100			21686	774	14290	14439	29582;29583;29584	29583		43			0.0055217610274667095
VADPYVVIM	9	Oxidation (M)	_VADPYVVIM(Oxidation (M))_		VADPYVVIM(1)		VADPYVVIM(48)	0	0	1		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.76495361328125	2	511.764986	1021.51542	0.48709	0.00024927	-0.13127	-6.7178E-05	0.35582	0.0001821	511.76477142448755	65.181	1.886	65.25	64.748	66.634	0.068916					137	72	3	0	0	0	0.033885	3	14815	14759;14815;14914		48.346	30.211	1	559520			21687	774	14290	14439	29585;29586;29587	29586		43			0.0055217610274667095
VAEHYLIQL	9	Unmodified	_VAEHYLIQL_					0	0	0			REV__ENST00000472469.5_2_3:58870372-59035390:-|nuORF	REV__ENST00000472469.5_2_3:58870372-59035390:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3033447265625	2	543.303124	1084.5917	0.44852	0.00024368	-0.0022998	-1.2495E-06	0.44622	0.00024243	543.3030264433133	67.64	1.5398	67.64	67.348	68.888	0					156	57	4	0	0	0	0.11547	1	15846	15846		29.082	0	1	3006100	+		21688	12035	14291	14440	29588	29588					0.05278315994382865
VAEHYLIQL	9	Unmodified	_VAEHYLIQL_					0	0	0			REV__ENST00000472469.5_2_3:58870372-59035390:-|nuORF	REV__ENST00000472469.5_2_3:58870372-59035390:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.3034057617188	2	543.303124	1084.5917	0.68243	0.00037077	-0.25527	-0.00013869	0.42716	0.00023208	543.3028986570922	67.607	1.4999	67.67	67.377	68.876	0.063507					139	54	4	0	0	0	0.11547	2	15686	15686;15797		29.082	0	1	2982500	+		21689	12035	14291	14440	29589;29590	29589					0.05278315994382865
VAEKEKER	8	Unmodified	_VAEKEKER_					0	0	0		tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1	tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1	tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.77716064453125	2	494.774731	987.534909	0.0065711	3.2512E-06	-0.33795	-0.00016721	-0.33137	-0.00016396	494.7745480958794	26.913	0.52212	27	26.846	27.368	0.086699					77	37	3	0	0	0	0.53926	1	3251	3251		1.8442	0	1	151830			21690	13572	14292	14441	29591	29591					0.040642684378553895
VAFGMGFD	8	Unmodified	_VAFGMGFD_					0	0	0			REV__ENST00000396987.7_1_8:41456432-41456600:+|nuORF	REV__ENST00000396987.7_1_8:41456432-41456600:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1888732910156	2	422.188914	842.363275	0.12999	5.488E-05	-0.3171	-0.00013388	-0.18711	-7.8995E-05	422.1887015804562	95.692	0.64025	95.731	95.634	96.274	0.038872					54	30	2	0	0	0	0.54081	1	24089	24089		0.79363	0	1	632240	+		21691	11728	14293	14442	29592	29592					-0.06421179854169168
VAFYFLVF	8	Unmodified	_VAFYFLVF_					0	0	0			REV__ENSG00000183153|ENST00000578689|GJD3	REV__ENSG00000183153|ENST00000578689|GJD3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7947082519531	2	503.275847	1004.53714	0.24491	0.00012326	1.5564	0.00078328	1.8013	0.00090654	503.27638481877136	88.973	0.4185	88.973	88.701	89.12	0					23	16	2	0	0	0	0.35759	1	22143	22143		11.114	0	1	57759	+		21692	10591	14294	14443	29593	29593					0.0350534891362031
VAGFKQMYKK	10	Unmodified	_VAGFKQMYKK_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.3341674804688	2	600.333901	1198.65325	0.34927	0.00020968	0.15978	9.5921E-05	0.50905	0.0003056	600.3338160642502	88.125	1.9043	88.155	87.237	89.141	0.030037					139	74	3	0	0	0	0.45627	1	21694	21694		3.5965	0	1	928050	+		21693	10534	14295	14444	29594	29594					0.06186924421990625
VAGYLVQLLF	10	Unmodified	_VAGYLVQLLF_					0	0	0			REV__ENSG00000184999|ENST00000332793|SLC22A10	REV__ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8343505859375	2	561.831517	1121.64848	0.32457	0.00018235	-0.17157	-9.6393E-05	0.153	8.5961E-05	561.8313258413881	95.127	0.60046	95.127	94.866	95.467	0					62	25	3	0	0	0	0.35264	1	24105	24105		16.942	2.104	1	248140	+		21694	10650	14296	14445	29595	29595					0.09252363550876908
VAISLTVGSSR	11	Unmodified	_VAISLTVGSSR_					0	0	0			REV__SEC23A|p.A267T|1|0.5|ENSG00000100934|chr14:39085791-39085791|C/T|missense_variant	REV__SEC23A|p.A267T|1|0.5|ENSG00000100934|chr14:39085791-39085791|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.31689453125	2	545.316763	1088.61897	0.53519	0.00029185	0.25857	0.000141	0.79375	0.00043285	545.3167173682548	84.635	2.8459	84.658	83.84	86.686	0.023125					387	132	3	0	0	0	0.36864	1	20673	20673		10.151	1.4052	1	7199100	+		21695	12982	14297	14446	29596	29596					0.07820799534783873
VAKKLVKAP	9	Unmodified	_VAKKLVKAP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.3286437988281	2	477.328945	952.643337	0.18834	8.9898E-05	-0.15396	-7.349E-05	0.034376	1.6409E-05	477.3287958952379	82.758	0.5171	82.758	82.534	83.051	0					29	17	2	0	0	0	0.34704	1	20347	20347		0.52476	0	1	99575	+		21696	9733	14298	14447	29597	29597					0.16512104478931633
VAKTAREQYVF	11	Unmodified	_VAKTAREQYVF_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.5531311035156	3	437.906705	1310.69829	-0.17806	-7.7974E-05	0.01351	5.916E-06	-0.16455	-7.2058E-05	437.90663308783223	40.759	0.42653	40.759	40.593	41.02	0					28	14	3	0	0	0	0.31099	1	7595	7595		1.0136	0.31591	1	34904	+		21697	10888	14299	14448	29598	29598					0.05536446488895308
VALDFEQEM	9	Unmodified	_VALDFEQEM_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.3240356445312	2	541.247157	1080.47976	0.59376	0.00032137	1.4171	0.00076701	2.0109	0.0010884	541.2470325882032	70.162	0.64738	70.223	70.065	70.712	0.060562					38	26	2	0	0	0	0.15281	1	16282	16282		37.075	10.807	1	200130			21698	827;5239	14300	14449	29599	29599					-0.0572590614492583
VAMKKKQKEER	11	Unmodified	_VAMKKKQKEER_					0	0	0			REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.9342956542969	3	458.934378	1373.7813	0.31171	0.00014305	0.20684	9.4926E-05	0.51855	0.00023798	458.934449187986	47.297	1.961	47.38	46.855	48.816	0.083092					195	72	4	0	0	0	0.41359	1	9594	9594		1.2148	0	1	370830	+		21699	12835	14301	14450	29600	29600					0.10936439945271559
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81793212890625	2	493.817879	985.621205	0.52073	0.00025715	-0.16637	-8.2155E-05	0.35436	0.00017499	493.8176893792511	100.33	0.83459	100.33	100.05	100.89	0					107	48	3	0	0	0	0.073832	3	25720	25677;25720;25760		38.151	0	1	439570	+		21700	7685	14302	14451	29601;29602;29603	29602					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81787109375	2	493.817879	985.621205	0.48833	0.00024115	-0.22947	-0.00011332	0.25886	0.00012783	493.8177079481356	100.84	0.29513	100.84	100.74	101.04	0					24	16	2	0	0	0	0.026569	2	25798	25798;25839		53.576	9.1686	1	371830	+		21701	7685	14302	14451	29604;29605	29604					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8179931640625	2	493.817879	985.621205	0.46009	0.0002272	-0.022364	-1.1043E-05	0.43772	0.00021616	493.8177530164086	101.4	0.64567	101.4	101.04	101.68	0					81	38	3	0	0	0	0.026569	3	25971	25883;25927;25971		53.576	9.1686	1	427340	+		21702	7685	14302	14451	29606;29607;29608	29608					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.818115234375	2	493.817879	985.621205	0.42542	0.00021008	-0.15965	-7.8839E-05	0.26577	0.00013124	493.8176952853353	101.7	0.33862	101.7	101.6	101.94	0					60	26	3	0	0	0	0.073832	2	26092	26092;26130		38.151	0	1	309100	+		21703	7685	14302	14451	29609;29610	29609					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81793212890625	2	493.817879	985.621205	0.38793	0.00019157	0.15642	7.7245E-05	0.54435	0.00026881	493.8178348604146	102.21	0.37289	102.21	102.13	102.5	0					44	27	2	0	0	0	0.25209	1	26223	26223		12.532	0	1	587590	+		21704	7685	14302	14451	29611	29611					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8180236816406	2	493.817879	985.621205	0.36871	0.00018208	0.030375	1.5E-05	0.39909	0.00019708	493.8177713594421	102.68	0.30208	102.68	102.4	102.71	0					36	18	3	0	0	0	0.29105	2	26279	26279;26325		7.9102	0	1	167870	+		21705	7685	14302	14451	29612;29613	29612					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81793212890625	2	493.817879	985.621205	0.35163	0.00017364	-0.095771	-4.7293E-05	0.25586	0.00012635	493.81766885861447	102.84	0.31618	102.84	102.69	103.01	0					52	22	3	0	0	0	0.20367	3	26366	26366;26408;26448		18.135	3.9383	1	188650	+		21706	7685	14302	14451	29614;29615;29616	29614					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8179016113281	2	493.817879	985.621205	0.32459	0.00016029	-0.0026872	-1.327E-06	0.3219	0.00015896	493.81770561679787	103.09	0.26609	103.09	103.01	103.27	0					24	17	2	0	0	0	0.11022	2	26486	26486;26530		30.225	6.5389	1	134370	+		21707	7685	14302	14451	29617;29618	29617					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81854248046875	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.603	1	99.603	99.103	100.1	0								0	0	0	0.05608	1	25424	25424		46.921	0	1		+		21708	7685	14302	14451	29619	29619					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8179931640625	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.02	1	100.02	99.515	100.52	0								0	0	0	0.05608	1	25550	25550		46.921	0	1		+		21709	7685	14302	14451	29620	29620					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8180236816406	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.53	1	101.53	101.03	102.03	0								0	0	0	0.084205	1	26010	26010		38.151	0	1		+		21710	7685	14302	14451	29621	29621					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81787109375	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.67	1	101.67	101.17	102.17	0								0	0	0	0.19992	1	26053	26053		18.135	0	1		+		21711	7685	14302	14451	29622	29622					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8179626464844	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.52	1	103.52	103.02	104.02	0								0	0	0	0.25692	1	26615	26615		7.9102	0	1		+		21712	7685	14302	14451	29623	29623					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81787109375	2	493.817879	985.621205	0.42542	0.00021008	-0.15965	-7.8839E-05	0.26577	0.00013124	493.8176952853353	101.7	0.33862	101.7	101.6	101.94	0					60	26	3	0	0	0	0.22289	1	26053	26053		18.135	0	1	309100	+		21713	7685	14302	14451	29624	29624					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.81787109375	2	493.817879	985.621205	0.52073	0.00025715	-0.16637	-8.2155E-05	0.35436	0.00017499	493.8176893792511	100.33	0.83459	100.33	100.05	100.89	0					107	48	3	0	0	0	0.063247	1	25798	25798		53.576	9.1686	1	439570	+		21714	7685	14302	14451	29625	29625					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8180236816406	2	493.817879	985.621205	0.46009	0.0002272	-0.022364	-1.1043E-05	0.43772	0.00021616	493.8177530164086	101.4	0.64567	101.4	101.04	101.68	0					81	38	3	0	0	0	0.1217	1	26010	26010		38.151	0	1	427340	+		21715	7685	14302	14451	29626	29626					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8180236816406	2	493.817879	985.621205	0.38793	0.00019157	0.15642	7.7245E-05	0.54435	0.00026881	493.8178348604146	102.21	0.37289	102.21	102.13	102.5	0					44	27	2	0	0	0	0.25051	1	26279	26279		7.9102	0	1	587590	+		21716	7685	14302	14451	29627	29627					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.81829833984375	2	493.817879	985.621205	0.57715	0.00028501	0.17011	8.4004E-05	0.74727	0.00036901	493.8178980842921	99.66	0.84721	99.703	99.492	100.34	0.042839					84	52	2	0	0	0	0.035878	1	25257	25257		46.921	0	1	2895800	+		21717	7685	14302	14451	29628	29628					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8179626464844	2	493.817879	985.621205	0.55728	0.00027519	-0.22327	-0.00011026	0.334	0.00016494	493.81766907867876	100.46	0.27422	100.5	100.3	100.58	0.042839					35	15	3	0	0	0	0.073832	1	25501	25501		38.151	0	1	549090	+		21718	7685	14302	14451	29629	29629					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8179626464844	2	493.817879	985.621205	0.55322	0.00027319	-0.21091	-0.00010415	0.34231	0.00016904	493.8176523389395	100.68	0.26187	100.72	100.55	100.81	0.042839					35	14	3	0	0	0	0.073832	1	25579	25579		38.151	0	1	278350	+		21719	7685	14302	14451	29630	29630					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8180236816406	2	493.817879	985.621205	0.53677	0.00026507	-0.20272	-0.00010011	0.33406	0.00016496	493.8177296710496	101.16	0.6647	101.2	100.76	101.43	0.042755					73	39	3	0	0	0	0.026569	5	25698	25623;25658;25698;25741;25791		53.576	6.2558	1	577120	+		21720	7685	14302	14451	29631;29632;29633;29634;29635	29633					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8184509277344	2	493.817879	985.621205	0.5164	0.00025501	-0.20611	-0.00010178	0.31029	0.00015323	493.81773711144564	101.62	0.344	101.66	101.43	101.77	0.042656					35	24	2	0	0	0	0.11022	4	25878	25831;25875;25878;25914		30.225	0	1	234940	+		21721	7685	14302	14451	29636;29637;29638;29639	29638					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8177795410156	2	493.817879	985.621205	0.51024	0.00025197	-0.034632	-1.7102E-05	0.47561	0.00023486	493.8177259204266	101.92	0.31203	101.97	101.73	102.05	0.042656					44	30	2	0	0	0	0.14718	2	25988	25950;25988		24.674	0	1	115920	+		21722	7685	14302	14451	29640;29641	29641					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8174743652344	2	493.817879	985.621205	0.49859	0.00024621	0.14045	6.9354E-05	0.63904	0.00031557	493.81787349025194	102.09	0.69339	102.13	101.95	102.65	0.042656					63	51	2	0	0	0	0.14718	2	26026	26026;26035		24.674	0	1	114020	+		21723	7685	14302	14451	29642;29643	29642					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8180236816406	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.97	1	100.01	99.513	100.51	0.042839								0	0	0	0.05608	1	25381	25381		46.921	0	1		+		21724	7685	14302	14451	29644	29644					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.818115234375	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.64	1	102.68	102.18	103.18	0.040916								0	0	0	0.25692	1	26185	26185		7.9102	0	1		+		21725	7685	14302	14451	29645	29645					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8179016113281	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.78	1	102.82	102.32	103.32	0.040916								0	0	0	0.23452	1	26227	26227		12.532	0	1		+		21726	7685	14302	14451	29646	29646					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8182373046875	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.93	1	102.97	102.47	103.47	0.040916								0	0	0	0.23452	1	26273	26273		12.532	3.9383	1		+		21727	7685	14302	14451	29647	29647					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8175964355469	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.33	1	103.37	102.87	103.87	0.03791								0	0	0	0.23452	1	26389	26389		12.532	3.9383	1		+		21728	7685	14302	14451	29648	29648					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.26068115234375	2	493.817879	985.621205	0.45046	0.00022245	-0.41412	-0.0002045	0.036344	1.7947E-05	493.8176649268943	103.73	0.1021	103.77	103.71	103.81	0.03791					11	7	2	0	0	0	0.24263	1	26505	26505		12.532	0	1	94754	+		21729	7685	14302	14451	29649	29649					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.3196716308594	2	493.817879	985.621205	0.5164	0.00025501	-0.20611	-0.00010178	0.31029	0.00015323	493.81773711144564	101.62	0.344	101.66	101.43	101.77	0.042656					35	24	2	0	0	0	0.2298	1	25875	25875		16.942	0	1	234940	+		21730	7685	14302	14451	29650	29650					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.81787109375	2	493.817879	985.621205	0.55322	0.00027319	-0.21091	-0.00010415	0.34231	0.00016904	493.8176523389395	100.68	0.26187	100.72	100.55	100.81	0.042839					35	14	3	0	0	0	0.15192	1	25623	25623		32.117	0	1	278350	+		21731	7685	14302	14451	29651	29651					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.81787109375	2	493.817879	985.621205	0.51024	0.00025197	-0.034632	-1.7102E-05	0.47561	0.00023486	493.8177259204266	101.92	0.31203	101.97	101.73	102.05	0.042656					44	30	2	0	0	0	0.2298	1	25914	25914		16.942	0	1	115920	+		21732	7685	14302	14451	29652	29652					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8177795410156	2	493.817879	985.621205	0.49859	0.00024621	0.14045	6.9354E-05	0.63904	0.00031557	493.81787349025194	102.09	0.69339	102.13	101.95	102.65	0.042656					63	51	2	0	0	0	0.19069	1	25988	25988		24.674	0	1	114020	+		21733	7685	14302	14451	29653	29653					0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.817879	985.621205	0.48833	0.00024115	-0.22947	-0.00011332	0.25886	0.00012783	493.8177079481356	100.84	0.29513	100.84	100.74	101.04	0	0.060503	-4.1904E-06	NaN	53.576	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371830	+		21734	7685	14302	14451							0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.817879	985.621205	0.29101	0.0001437	0.065014	3.2105E-05	0.35602	0.00017581	493.8178289813267	103.65	0.066101	103.65	103.62	103.69	0	-0.060397	0.00025664	NaN	12.532	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98323	+		21735	7685	14302	14451							0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.817879	985.621205	0.40474	0.00019987	0.082963	4.0969E-05	0.4877	0.00024084	493.81789689920964	102.01	0.21853	102.01	101.94	102.16	0	-0.06299	-3.3127E-05	NaN	24.674	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	640880	+		21736	7685	14302	14451							0.12781880010504665
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.817879	985.621205	0.53677	0.00026507	-0.20272	-0.00010011	0.33406	0.00016496	493.8177296710496	101.16	0.6647	101.2	100.76	101.43	0.042755	-0.10024	-6.9711E-05	NaN	53.576	73	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	577120	+		21737	7685	14302	14451							0.12781880010504665
VAPIRKWS	8	Unmodified	_VAPIRKWS_					0	0	0			REV__MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant	REV__MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7872619628906	2	478.787444	955.560336	-0.24081	-0.0001153	0.12108	5.797E-05	-0.11973	-5.7326E-05	478.78739904763853	44.882	0.58726	44.969	44.734	45.321	0.08754					50	22	3	0	0	0	0.4772	1	8650	8650		15.847	4.2069	1	269760	+		21738	8384	14303	14452	29654	29654					0.0807778775093766
VAPLFPELIE	10	Unmodified	_VAPLFPELIE_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2982788085938	2	564.320983	1126.62741	0.19413	0.00010955	-0.042062	-2.3736E-05	0.15207	8.5816E-05	564.3209545979731	90.102	0.41987	90.102	89.933	90.353	0					26	17	2	0	0	0	0.31712	1	22565	22565		6.7232	0	1	258650	+		21739	8078	14304	14453	29655	29655					0.06916353451379109
VAPLLKRKSL	10	Unmodified	_VAPLLKRKSL_					0	0	0			REV__nc|ENSG00000196313|Q96HA1-3|POM121	REV__nc|ENSG00000196313|Q96HA1-3|POM121	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2568969726562	2	562.879333	1123.74411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.632	1	28.632	28.132	29.132	0								0	0	0	0.33988	1	3896	3896		0.35063	0.35063	1		+		21740	12867	14305	14454	29656	29656					0.18719136461777452
VAPTPLDEL	9	Unmodified	_VAPTPLDEL_					0	0	0		nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7611083984375	2	477.760758	953.506963	0.023387	1.1173E-05	0.28919	0.00013817	0.31258	0.00014934	477.7608471462488	102.21	0.46984	102.21	102.07	102.54	0					57	33	2	0	0	0	0.26684	2	26238	26196;26238		10.824	0	1	522820			21741	3418	14306	14455	29657;29658	29658					0.028349454577551114
VAPWLASSLAS	11	Unmodified	_VAPWLASSLAS_					0	0	0		ENST00000527538.5_1_11:71164342-71170844:+|nuORF	ENST00000527538.5_1_11:71164342-71170844:+|nuORF	ENST00000527538.5_1_11:71164342-71170844:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7822875976562	2	551.300581	1100.58661	0.53764	0.0002964	-0.60694	-0.0003346	-0.069296	-3.8203E-05	551.3002524780015	47.212	0.44788	47.295	47.06	47.507	0.083096					34	16	3	0	0	0	0.31092	1	9290	9290		1.4819	0	1	161420			21742	7005	14307	14456	29659	29659					0.04034012131728559
VAQIVLDIF	9	Unmodified	_VAQIVLDIF_					0	0	0			REV__nc|ENSG00000146416|Q9NVV5-6|AIG1	REV__nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7249450683594	2	509.302593	1016.59063	0.31312	0.00015947	-0.17138	-8.7285E-05	0.14174	7.2186E-05	509.30236337052827	71.542	0.48628	71.542	71.269	71.755	0					32	16	3	0	0	0	0.25051	1	16935	16935		7.9102	0	1	112240	+		21743	9542	14308	14457	29660	29660					0.08300101625457046
VAQIVLDIF	9	Unmodified	_VAQIVLDIF_					0	0	0			REV__nc|ENSG00000146416|Q9NVV5-6|AIG1	REV__nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.302593	1016.59063	0.30346	0.00015455	-0.10148	-5.1684E-05	0.20198	0.00010287	509.3025119530181	71.448	0.4688	71.506	71.211	71.68	0.058578	-0.017848	3.0302E-05	NaN	7.9102	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105910	+		21744	9542	14308	14457							0.08300101625457046
VAQRALEEL	9	Unmodified	_VAQRALEEL_					0	0	0			REV__nc|ENSG00000100983|P48637-2|GSS	REV__nc|ENSG00000100983|P48637-2|GSS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7905883789062	2	514.790381	1027.56621	0.59667	0.00030716	-0.80462	-0.00041421	-0.20794	-0.00010705	514.7903655334807	55.017	0.74474	55.082	54.803	55.548	0.065128					82	29	4	0	0	0	0.065576	1	11737	11737		39.95	0	1	934780	+		21745	8407	14309	14458	29661	29661					0.05352841471949432
VARDNEEY	8	Unmodified	_VARDNEEY_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2249755859375	2	498.225071	994.435589	-0.035635	-1.7754E-05	-0.4573	-0.00022784	-0.49294	-0.00024559	498.224786165908	26.747	0.30627	26.834	26.722	27.029	0.0867					35	21	2	0	0	0	0.54097	1	3259	3259		0.69038	0	1	23030	+		21746	8496	14310	14459	29662	29662					-0.06185174246911629
VARLGNGR	8	Unmodified	_VARLGNGR_					0	0	0			REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF	REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.7512512207031	2	421.751393	841.488233	0.0092834	3.9153E-06	-0.0077413	-3.2649E-06	0.0015421	6.5037E-07	421.7513491651864	73.253	0.99276	73.305	72.656	73.649	0.052567					50	36	2	0	0	0	0.54097	1	17095	17095		0.69038	0	1	158920	+		21747	10669	14311	14460	29663	29663					0.061148733972345326
VARPAEPA	8	Unmodified	_VARPAEPA_					0	0	0		ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5018005371094	2	405.727052	809.439552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.355	1	39.443	38.943	39.943	0.088562								0	0	0	0.38822	1	6972	6972		0.69038	0	1				21748	5621	14312	14461	29664	29664					0.02720960037459008
VARRKTQA	8	Unmodified	_VARRKTQA_					0	0	0			REV__ENST00000541027.5_1_11:73689766-73691071:-|nuORF	REV__ENST00000541027.5_1_11:73689766-73691071:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.28521728515625	2	465.2856	928.556647	0.75404	0.00035085	-0.83422	-0.00038815	-0.080175	-3.7304E-05	465.2851016559669	84.851	0.42854	84.851	84.704	85.132	0					28	16	2	0	0	0	0.5411	1	21007	21007		0.6015	0	1	499340	+		21749	12400	14313	14462	29665	29665					0.08951117977073864
VARRWRRRQGG	11	Unmodified	_VARRWRRRQGG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.6082763671875	3	466.608098	1396.80247	0.25102	0.00011713	-0.24721	-0.00011535	0.003808	1.7768E-06	466.60791228553444	95.53	2.2158	95.53	94.656	96.872	0					277	101	3	0	0	0	0.41359	1	24180	24180		1.2148	1.2148	1	1459000	+		21750	11559	14314	14463	29666	29666					0.11993630879624106
VARRWRRRQGG	11	Unmodified	_VARRWRRRQGG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.6082458496094	3	466.608098	1396.80247	0.061154	2.8535E-05	0.037469	1.7483E-05	0.098623	4.6018E-05	466.608012015437	95.509	2.0294	95.548	94.792	96.822	0.038872					262	98	4	0	0	0	0.41359	1	24007	24007		1.2148	1.2148	1	1181700	+		21751	11559	14314	14463	29667	29667					0.11993630879624106
VARRWRRRQGG	11	Unmodified	_VARRWRRRQGG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	466.608098	1396.80247	0.25102	0.00011713	-0.24721	-0.00011535	0.003808	1.7768E-06	466.60791228553444	95.53	2.2158	95.53	94.656	96.872	0	-0.0089327	-0.00015855	NaN	1.2148	277	101	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1459000	+		21752	11559	14314	14463							0.11993630879624106
VASHNRGLVL	10	Unmodified	_VASHNRGLVL_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3104248046875	2	533.311815	1064.60908	0.52869	0.00028196	-4.2316	-0.0022568	-3.7029	-0.0019748	533.3086955461858	57.514	0.50117	57.514	57.354	57.855	0					34	17	3	0	0	0	0.24016	1	12614	12614		29.082	0.59474	1	193780			21753	4904	14315	14464	29668	29668					0.07935656320046292
VASIAGGIRN	10	Unmodified	_VASIAGGIRN_					0	0	0		nc|ENSG00000060971|P09110-2|ACAA1;ENSG00000060971|ENST00000333167|ACAA1	nc|ENSG00000060971|P09110-2|ACAA1	nc|ENSG00000060971|P09110-2|ACAA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774963378906	2	479.277441	956.540328	0.10733	5.1439E-05	0.10607	5.0836E-05	0.2134	0.00010228	479.2773625245644	76.7	0.89496	76.739	76.313	77.207	0.03923					80	32	3	0	0	0	0.42901	1	18265	18265		8.7454	0	1	425500			21754	647	14316	14465	29669	29669					0.06031992020336929
VASLLNSVRS	10	Unmodified	_VASLLNSVRS_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3034057617188	2	523.303655	1044.59276	0.34884	0.00018255	0.015392	8.0547E-06	0.36423	0.0001906	523.3035050306771	79.839	0.75821	79.866	79.464	80.222	0.026436					60	26	3	0	0	0	0.45133	1	19225	19225		4.5289	0	1	275610			21755	3446	14317	14466	29670	29670					0.07224530363282611
VASMAFSKFLF	11	Unmodified	_VASMAFSKFLF_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3270874023438	2	624.328285	1246.64202	-0.26636	-0.0001663	-1.9926	-0.001244	-2.259	-0.0014103	624.3271680584263	106.31	0.26154	106.31	106.24	106.5	0					27	24	3	0	0	0	0.40796	1	27412	27412		2.4985	0.65425	1	51150	+		21756	10809	14318	14467	29671	29671					0.028561023278825814
VASMAFSKFLF	11	Unmodified	_VASMAFSKFLF_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.785888671875	2	624.328285	1246.64202	-0.26636	-0.0001663	-1.9926	-0.001244	-2.259	-0.0014103	624.3271680584263	106.31	0.26154	106.31	106.24	106.5	0					27	24	3	0	0	0	0.31086	1	27406	27406		2.4985	0.84587	1	51150	+		21757	10809	14318	14467	29672	29672					0.028561023278825814
VASSVFITL	9	Unmodified	_VASSVFITL_					0	0	0		nc|ENSG00000162458|Q8WUP2-2|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-3|FBLIM1	nc|ENSG00000162458|Q8WUP2-2|FBLIM1	nc|ENSG00000162458|Q8WUP2-2|FBLIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.77349853515625	2	468.773668	935.532783	0.22511	0.00010552	-0.40888	-0.00019167	-0.18377	-8.6146E-05	468.7734187702838	78.217	0.50996	78.248	77.995	78.505	0.030159					25	17	2	0	0	0	0.015682	1	18749	18749		61.357	11.424	1	168800			21758	3827	14319	14468	29673	29673					0.06243839700039189
VASSVFITL	9	Unmodified	_VASSVFITL_					0	0	0		nc|ENSG00000162458|Q8WUP2-2|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-3|FBLIM1	nc|ENSG00000162458|Q8WUP2-2|FBLIM1	nc|ENSG00000162458|Q8WUP2-2|FBLIM1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	468.773668	935.532783	0.17251	8.0869E-05	-0.21582	-0.00010117	-0.04331	-2.0303E-05	468.77348755635376	78.25	0.40462	78.25	78.043	78.448	0	0.0011817	0.00011058	NaN	61.357	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124470			21759	3827	14319	14468							0.06243839700039189
VASYGFSQIF	10	Unmodified	_VASYGFSQIF_					0	0	0		tr|U7T235|U7T235_FUSNUYidE/YbjLduplicationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00532PE=3SV=1	tr|U7T235|U7T235_FUSNUYidE/YbjLduplicationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00532PE=3SV=1	tr|U7T235|U7T235_FUSNUYidE/YbjLduplicationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00532PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7761840820312	2	559.779482	1117.54441	0.5008	0.00028034	-0.72878	-0.00040796	-0.22798	-0.00012762	559.778629815071	91.45	0.81876	91.45	91.269	92.088	0					73	30	4	0	0	0	0.22118	1	23008	23008		31.268	3.6395	1	608410			21760	13677	14320	14469	29674	29674					-0.009659632766442883
VATDITSTR	9	Unmodified	_VATDITSTR_					0	0	0		nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2585144042969	2	482.258914	962.503274	-0.4058	-0.0001957	0.48093	0.00023193	0.075135	3.6234E-05	482.25901499845855	28.565	0.33436	28.565	28.423	28.758	0					21	13	2	0	0	0	0.26705	1	3861	3861		10.8	2.644	1	73956			21761	1492	14321	14470	29675	29675					0.020522756839000067
VATDITSTR	9	Unmodified	_VATDITSTR_					0	0	0		nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2591857910156	2	482.258914	962.503274	-0.38019	-0.00018335	0.49396	0.00023822	0.11377	5.4868E-05	482.25905409557873	28.466	0.30277	28.549	28.423	28.726	0.082132					42	16	3	0	0	0	0.30757	2	3705	3705;3750		5.7319	0	1	58470			21762	1492	14321	14470	29676;29677	29676					0.020522756839000067
VATLLGLILL	10	Unmodified	_VATLLGLILL_					0	0	0			REV__ENSG00000162366|ENST00000294338|PDZK1IP1	REV__ENSG00000162366|ENST00000294338|PDZK1IP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.353759765625	2	513.352086	1024.68962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.211	1	24.211	23.711	24.711	0								0	0	0	0.33979	1	2621	2621		0.45834	0	1		+		21763	9884	14322	14471	29678	29678					0.1782612459039683
VAVTRSRK	8	Unmodified	_VAVTRSRK_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.7879638671875	2	458.787976	915.561398	0.18269	8.3814E-05	-0.01972	-9.0472E-06	0.16297	7.4767E-05	458.78789094287606	87.923	1.1413	87.953	87.628	88.77	0.030037					104	43	4	0	0	0	0.53494	1	21767	21767		4.756	0	1	1535200			21764	4861	14323	14472	29679	29679					0.10024002119848774
VAYDPEGIL	9	Unmodified	_VAYDPEGIL_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT;ENST00000520678.1_1_8:43037358-43049067:+|nuORF	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2981262207031	2	488.752933	975.491313	0.24476	0.00011963	0.36283	0.00017733	0.60759	0.00029696	488.75308029792296	79.692	0.36536	79.719	79.573	79.939	0.026428					20	12	2	0	0	0	0.2446	1	19187	19187		7.2892	0	1	65191			21765	4055	14324	14473	29680	29680					0.002586589407201245
VAYDPEGIL	9	Unmodified	_VAYDPEGIL_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT;ENST00000520678.1_1_8:43037358-43049067:+|nuORF	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	488.752933	975.491313	0.5251	0.00025664	-0.1165	-5.694E-05	0.4086	0.00019971	488.75282205601667	79.766	0.42709	79.766	79.562	79.989	0	0.023785	-5.2839E-05	NaN	11.64	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160590			21766	4055	14324	14473							0.002586589407201245
VCAGEWAYL	9	Unmodified	_VCAGEWAYL_					0	0	0			REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF	REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2340393066406	2	506.233853	1010.45315	0.32249	0.00016326	0.34739	0.00017586	0.66988	0.00033912	506.23363066893995	53.538	1.9046	53.538	52.616	54.52	0					134	73	3	0	0	0	0.29105	1	11363	11363		7.9102	0.62092	1	414180	+		21767	7986	14325	14474	29681	29681					-0.0516555024560148
VCATRQPSRNI	11	Unmodified	_VCATRQPSRNI_					0	0	0		ENST00000361368.6_1_7:98625224-98626022:-|nuORF	ENST00000361368.6_1_7:98625224-98626022:-|nuORF	ENST00000361368.6_1_7:98625224-98626022:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8033447265625	2	622.830046	1243.64554	0.0036385	2.2661E-06	1.8468	0.0011502	1.8504	0.0011525	622.830642321933	94.92	0.12772	94.92	94.811	94.938	0					5	4	2	0	0	0	0.31062	1	24000	24000		4.897	0	1	55067			21768	6161	14326	14475	29682	29682					0.033461651544484994
VCDMHWHHL	9	Unmodified	_VCDMHWHHL_					0	0	0			REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF	REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2557983398438	2	589.255128	1176.4957	0.33446	0.00019708	0.60267	0.00035513	0.93713	0.00055221	589.2558992785317	48.538	2.7544	48.538	47.735	50.489	0					229	96	5	0	0	0	0.33704	1	10246	10246		1.8442	0.36234	1	946720	+		21769	11358	14327	14476	29683	29683					-0.08548478389002412
VCDSAGGGSDL	11	Unmodified	_VCDSAGGGSDL_					0	0	0		ENST00000473037.5_1_1:235826242-235897989:-|nuORF;ENSG00000143669|ENST00000389793|LYST	ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENST00000473037.5_1_1:235826242-235897989:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2872619628906	2	490.703114	979.391675	-0.16983	-8.3336E-05	2.2114	0.0010852	2.0416	0.0010018	490.7041107328769	28.472	0.31359	28.472	28.334	28.647	0					22	15	2	0	0	0	0.31095	1	3894	3894		1.1933	0.39971	1	22117			21770	3178	14328	14477	29684	29684					-0.09884526735538657
VCHFTSSPSPA	11	Unmodified	_VCHFTSSPSPA_					0	0	0		ENST00000526600.1_1_11:12963940-12964069:+|nuORF	ENST00000526600.1_1_11:12963940-12964069:+|nuORF	ENST00000526600.1_1_11:12963940-12964069:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7567138671875	2	566.758223	1131.50189	0.13103	7.4265E-05	0.42434	0.0002405	0.55538	0.00031476	566.7565802838322	52.578	1.3721	52.578	52.015	53.388	0					114	50	4	0	0	0	0.30798	1	11106	11106		17.113	1.2657	1	809210			21771	6992	14329	14478	29685	29685					-0.0585968167649753
VCIPQCCTNQ	10	Unmodified	_VCIPQCCTNQ_					0	0	0			REV__ENSG00000187272|ENST00000254072|KRTAP9-8	REV__ENSG00000187272|ENST00000254072|KRTAP9-8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7327270507812	2	554.732837	1107.45112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.983	1	23.085	22.585	23.585	0.10178								0	0	0	0.34018	1	2170	2170		0	0	1		+		21772	10730	14330	14479	29686	29686					-0.09830670317387558
VCLLLLSCTLS	11	Unmodified	_VCLLLLSCTLS_					0	0	0		nc|ENSG00000079931|Q6UVY6-2|MOXD1;ENSG00000079931|ENST00000367963|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.769775390625	2	582.821978	1163.6294	0.58841	0.00034294	-0.15604	-9.0945E-05	0.43236	0.00025199	582.8217917305042	55.752	0.3932	55.817	55.646	56.039	0.065132					20	13	2	0	0	0	0.30933	1	11993	11993		13.906	7.1829	1	92849			21773	887	14331	14480	29687	29687					0.0541332287334626
VCLLLLSCTLS	11	Unmodified	_VCLLLLSCTLS_					0	0	0		nc|ENSG00000079931|Q6UVY6-2|MOXD1;ENSG00000079931|ENST00000367963|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	582.821978	1163.6294	0.56962	0.00033199	0.5374	0.00031321	1.107	0.00064519	583.3238469075634	55.815	0.42835	55.815	55.579	56.007	0	-0.0010693	0.0002624	NaN	13.906	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157580			21774	887	14331	14480							0.0541332287334626
VCLNNLPASDH	11	Unmodified	_VCLNNLPASDH_					0	0	0			REV__COL4A3BP|p.R543L|1|0.13|ENSG00000113163|chr5:75381191-75381191|C/A|missense_variant	REV__COL4A3BP|p.R543L|1|0.13|ENSG00000113163|chr5:75381191-75381191|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.7825927734375	2	591.78223	1181.54991	0.44208	0.00026162	0.66841	0.00039555	1.1105	0.00065717	591.7826567741362	79.233	0.86075	79.233	78.954	79.815	0					79	29	4	0	0	0	0.39569	1	19287	19287		5.2969	0.066215	1	681880	+		21775	7826	14332	14481	29688	29688					-0.03360607756462741
VCPRCCCHRP	10	Unmodified	_VCPRCCCHRP_					0	0	0		ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38	ENSG00000145868|ENST00000340253|FBXO38	ENSG00000145868|ENST00000340253|FBXO38	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.2491455078125	2	587.248466	1172.48238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.67	1	18.67	18.17	19.17	0								0	0	0	0.34018	1	1176	1176		0	0	1				21776	3266	14333	14482	29689	29689					-0.0969637576426976
VCQKKFHV	8	Unmodified	_VCQKKFHV_					0	0	0			REV__chr18:49490846-49491405|136|187.57|0.0|24.16|-|0|None,RPL17-C18orf32|1	REV__chr18:49490846-49491405|136|187.57|0.0|24.16|-|0|None,RPL17-C18orf32|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7754821777344	2	494.77348	987.532406	0.10112	5.0033E-05	2.7874	0.0013791	2.8885	0.0014292	494.77474972713674	33.586	0.47633	33.586	33.378	33.854	0					27	16	2	0	0	0	0.3576	1	5396	5396		2.3027	1.5091	1	35809	+		21777	7794	14334	14483	29690	29690					0.0381414149920829
VCQRGMAALPS	11	Unmodified	_VCQRGMAALPS_					0	0	0		ENST00000484373.5_1_22:20024321-20041279:+|nuORF	ENST00000484373.5_1_22:20024321-20041279:+|nuORF	ENST00000484373.5_1_22:20024321-20041279:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.78564453125	2	566.783718	1131.55288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.806	1	32.806	32.306	33.306	0								0	0	0	0.33873	1	5130	5130		1.1933	0.50296	1				21778	6773	14335	14484	29691	29691					-0.00763055903280474
VCRPTWRQLL	10	Unmodified	_VCRPTWRQLL_					0	0	0			REV__nc|ENSG00000161013|Q9UQ53-3|MGAT4B	REV__nc|ENSG00000161013|Q9UQ53-3|MGAT4B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.08160400390625	3	424.572892	1270.69685	0.3499	0.00014856	-3.0251	-0.0012844	-2.6752	-0.0011358	424.5715409301996	52.188	0.66904	52.188	51.858	52.527	0					32	23	2	0	0	0	0.31851	1	11063	11063		0.77653	0.27058	1	59941	+		21779	12826	14336	14485	29692	29692					0.07232533919136586
VCRPTWRQLL	10	Unmodified	_VCRPTWRQLL_					0	0	0			REV__nc|ENSG00000161013|Q9UQ53-3|MGAT4B	REV__nc|ENSG00000161013|Q9UQ53-3|MGAT4B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	424.572892	1270.69685	0.10346	4.3926E-05	-2.3791	-0.0010101	-2.2757	-0.00096619	424.5715983576323	52.191	0.088436	52.258	52.203	52.291	0.067173	0.035055	0.00051308	NaN	0.77653	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15244	+		21780	12826	14336	14485							0.07232533919136586
VCSHQDKEKG	10	Unmodified	_VCSHQDKEKG_					0	0	0		SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant;nc|ENSG00000164175|Q9UMX9-2|SLC45A2;nc|ENSG00000164175|Q9UMX9-4|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2	SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant	SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7672729492188	2	565.76658	1129.51861	0.42156	0.0002385	1.0172	0.00057547	1.4387	0.00081398	565.766937788374	55.583	0.57087	55.583	55.318	55.889	0					44	18	3	0	0	0	0.25276	1	11998	11998		27.629	2.6378	1	362920			21781	3988	14337	14486	29693	29693					-0.040971807905634705
VCSHQDKEKG	10	Unmodified	_VCSHQDKEKG_					0	0	0		SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant;nc|ENSG00000164175|Q9UMX9-2|SLC45A2;nc|ENSG00000164175|Q9UMX9-4|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2	SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant	SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7670288085938	2	565.76658	1129.51861	0.35735	0.00020217	1.5955	0.00090269	1.9529	0.0011049	565.7669525530974	55.556	0.44127	55.621	55.374	55.815	0.065128					38	15	3	0	0	0	0.30966	1	11849	11849		21.537	2.175	1	374970			21782	3988	14337	14486	29694	29694					-0.040971807905634705
VCSHQDKEKG	10	Unmodified	_VCSHQDKEKG_					0	0	0		SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant;nc|ENSG00000164175|Q9UMX9-2|SLC45A2;nc|ENSG00000164175|Q9UMX9-4|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2	SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant	SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	565.76658	1129.51861	0.42156	0.0002385	1.0172	0.00057547	1.4387	0.00081398	565.766937788374	55.583	0.57087	55.583	55.318	55.889	0	-0.019197	-0.00017904	NaN	27.629	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362920			21783	3988	14337	14486							-0.040971807905634705
VCSILRIRTS	10	Unmodified	_VCSILRIRTS_					0	0	0		OR10G8|p.I220T|1|0.7|ENSG00000234560|chr11:124030281-124030281|T/C|missense_variant;ENSG00000254737|ENST00000641722|OR10G4;ENSG00000234560|ENST00000641224|OR10G8;ENSG00000182634|ENST00000641585|OR10G7	OR10G8|p.I220T|1|0.7|ENSG00000234560|chr11:124030281-124030281|T/C|missense_variant	OR10G8|p.I220T|1|0.7|ENSG00000234560|chr11:124030281-124030281|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3167724609375	2	574.334433	1146.65431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.937	1	52.937	52.437	53.437	0								0	0	0	0.33443	1	11206	11206		6.7232	0	1				21784	4885	14338	14487	29695	29695					0.08685138790929159
VCSLLVFASWM	11	Unmodified	_VCSLLVFASWM_					0	0	0		ENSG00000197706|ENST00000343399|OR6C74	ENSG00000197706|ENST00000343399|OR6C74	ENSG00000197706|ENST00000343399|OR6C74	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.3162841796875	2	628.31432	1254.61409	0.38203	0.00024004	3.3621	0.0021124	3.7441	0.0023525	628.3162782960917	76.104	0.17334	76.143	76.084	76.257	0.03923					15	9	2	0	0	0	0.35043	1	18130	18130		12.241	1.4411	1	581600			21785	5316	14339	14488	29696	29696					-0.0030354392386016116
VCSWSWRCQ	9	Unmodified	_VCSWSWRCQ_					0	0	0			REV__ENST00000480925.1_1_9:100819070-100819196:+|nuORF	REV__ENST00000480925.1_1_9:100819070-100819196:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.764404296875	2	577.747136	1153.47972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.067	1	56.134	55.634	56.634	0.066452								0	0	0	0.24643	1	12025	12025		10.074	2.465	1		+		21786	12086	14340	14489	29697	29697					-0.09088184625898066
VDARALTQTGG	11	Unmodified	_VDARALTQTGG_					0	0	0		FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7877197265625	2	544.78837	1087.56219	-0.086573	-4.7164E-05	-0.072106	-3.9283E-05	-0.15868	-8.6447E-05	544.788266988406	28.839	0.2195	28.917	28.789	29.008	0.078287					19	15	2	0	0	0	0.41892	1	3836	3836		0	0	1	12721			21787	5255	14341	14490	29698	29698					0.021907519781962037
VDCAALSF	8	Unmodified	_VDCAALSF_					0	0	0			REV__NT5DC1-SEC63|1|fusion	REV__NT5DC1-SEC63|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.2883605957031	2	413.194196	824.37384	0.3413	0.00014102	-1.5687	-0.00064818	-1.2274	-0.00050715	413.1937330370366	92.496	0.82008	92.533	92.105	92.925	0.03653					38	28	2	0	0	0	0.3576	1	23193	23193		2.5775	0	1	51210	+		21788	10453	14342	14491	29699	29699					-0.04537197199726961
VDCPETGHNL	10	Unmodified	_VDCPETGHNL_					0	0	0		FAM135B|p.A418E|1|0.43|ENSG00000147724|chr8:138167900-138167900|G/T|missense_variant	FAM135B|p.A418E|1|0.43|ENSG00000147724|chr8:138167900-138167900|G/T|missense_variant	FAM135B|p.A418E|1|0.43|ENSG00000147724|chr8:138167900-138167900|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7384643554688	2	542.740031	1083.46551	0.27874	0.00015129	-2.5312	-0.0013738	-2.2524	-0.0012225	542.7383653419134	58.097	0.44926	58.097	57.768	58.217	0					45	15	4	0	0	0	0.19399	2	12759	12759;12809		34.402	17.459	1	841920			21789	7335	14343	14492	29700;29701	29700					-0.07288558573213777
VDDARWLVL	9	Unmodified	_VDDARWLVL_					0	0	0			REV__ENSG00000180071|ENST00000399703|ANKRD18A	REV__ENSG00000180071|ENST00000399703|ANKRD18A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.80126953125	2	543.800749	1085.58694	0.42401	0.00023058	0.64855	0.00035268	1.0726	0.00058326	543.8008608760088	71.336	0.42615	71.336	71.158	71.584	0					24	14	2	0	0	0	0.18364	1	16821	16821		20.454	1.1966	1	261690	+		21790	10497	14344	14493	29702	29702					0.04757431851612637
VDDDRKHDI	9	Unmodified	_VDDDRKHDI_					0	0	0		CUL3|p.E702D|1|0.28|ENSG00000036257|chr2:224478269-224478269|C/G|missense_variant	CUL3|p.E702D|1|0.28|ENSG00000036257|chr2:224478269-224478269|C/G|missense_variant	CUL3|p.E702D|1|0.28|ENSG00000036257|chr2:224478269-224478269|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.77001953125	2	556.770177	1111.5258	-0.18662	-0.0001039	0.13371	7.4444E-05	-0.052911	-2.9459E-05	556.7701810970314	19.175	0.61939	19.175	19.025	19.644	0					150	71	4	0	0	0	0.30005	1	1324	1324		6.7232	0.99131	1	92192			21791	258	14345	14494	29703	29703					-0.025501249184799235
VDDEGCDLVIR	11	Unmodified	_VDDEGCDLVIR_					0	0	0			REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.2933959960938	2	617.292627	1232.5707	-0.1912	-0.00011803	-0.56501	-0.00034877	-0.75621	-0.0004668	617.2933389294031	57.966	0.39854	57.966	57.768	58.166	0					32	13	3	0	0	0	0.39744	1	12725	12725		4.897	0.36815	1	110290	+		21792	7941	14346	14495	29704	29704					-0.036280621674677604
VDDEGCDLVIR	11	Unmodified	_VDDEGCDLVIR_					0	0	0			REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.2921752929688	2	617.292627	1232.5707	-0.15482	-9.557E-05	-2.0773	-0.0012823	-2.2321	-0.0013779	617.292919698839	57.91	0.30885	57.979	57.825	58.134	0.068375					20	11	3	0	0	0	0.39744	1	12587	12587		4.897	0.36815	1	96786	+		21793	7941	14346	14495	29705	29705					-0.036280621674677604
VDDEGCDLVIR	11	Unmodified	_VDDEGCDLVIR_					0	0	0			REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	617.292627	1232.5707	-0.1912	-0.00011803	-0.56501	-0.00034877	-0.75621	-0.0004668	617.2933389294031	57.966	0.39854	57.966	57.768	58.166	0	-0.0064718	0.00061859	NaN	4.897	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110290	+		21794	7941	14346	14495							-0.036280621674677604
VDDEGCDLVIR	11	Unmodified	_VDDEGCDLVIR_					0	0	0			REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	617.292627	1232.5707	-0.15482	-9.557E-05	-2.0773	-0.0012823	-2.2321	-0.0013779	617.292919698839	57.91	0.30885	57.979	57.825	58.134	0.068375	0.0064718	-0.0012484	NaN	4.897	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96786	+		21795	7941	14346	14495							-0.036280621674677604
VDDFGEGY	8	Unmodified	_VDDFGEGY_					0	0	0			REV__ENST00000486003.1_1_22:21331981-21333992:+|nuORF	REV__ENST00000486003.1_1_22:21331981-21333992:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.7606506347656	2	451.18234	900.350128	0.10851	4.8956E-05	-0.40883	-0.00018446	-0.30032	-0.0001355	451.1820171184811	39.086	0.36871	39.173	38.994	39.363	0.086884					22	14	2	0	0	0	0.3576	1	6861	6861		2.5775	0	1	37283	+		21796	10610	14347	14496	29706	29706					-0.10403339432559733
VDDFGEGY	8	Unmodified	_VDDFGEGY_					0	0	0			REV__ENST00000486003.1_1_22:21331981-21333992:+|nuORF	REV__ENST00000486003.1_1_22:21331981-21333992:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	451.18234	900.350128	0.2293	0.00010346	-0.5958	-0.00026882	-0.3665	-0.00016536	451.18194921290143	39.188	0.40312	39.188	39.03	39.433	0	0.0077369	-8.8103E-05	NaN	2.5775	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47783	+		21797	10610	14347	14496							-0.10403339432559733
VDDLMEQQF	9	Unmodified	_VDDLMEQQF_					0	0	0			REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2506103515625	2	562.750064	1123.48558	0.28626	0.0001611	-1.3519	-0.0007608	-1.0657	-0.0005997	562.749352085126	102.43	0.47693	102.43	102.22	102.69	0					56	31	2	0	0	0	0.27332	1	26254	26254		10.074	1.3285	1	137330	+		21798	12427	14348	14497	29707	29707					-0.07122807633254524
VDDLMEQQF	9	Unmodified	_VDDLMEQQF_					0	0	0			REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2506103515625	2	562.750064	1123.48558	0.28626	0.0001611	-1.3519	-0.0007608	-1.0657	-0.0005997	562.749352085126	102.43	0.47693	102.43	102.22	102.69	0					56	31	2	0	0	0	0.24791	1	26254	26254		10.074	1.3285	1	137330	+		21799	12427	14348	14497	29708	29708					-0.07122807633254524
VDDPKHFTF	9	Unmodified	_VDDPKHFTF_					0	0	0			REV__DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	REV__DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2680053710938	2	553.269281	1104.52401	0.58034	0.00032108	-0.57731	-0.00031941	0.0030314	1.6772E-06	553.2687254965405	55.593	0.23931	55.658	55.491	55.73	0.065128					11	8	2	0	0	0	0.27332	1	11879	11879		10.074	0.6908	1	58121	+		21800	7891	14349	14498	29709	29709					-0.024071339364581945
VDEKTKSIYDL	11	Unmodified	_VDEKTKSIYDL_					0	0	0			REV__nc|ENSG00000134215|Q9UKW4-2|VAV3	REV__nc|ENSG00000134215|Q9UKW4-2|VAV3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.55279541015625	3	437.566126	1309.67655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.443	1	41.443	40.943	41.943	0								0	0	0	0.33799	1	7727	7727		1.4551	0.24029	1		+		21801	9165	14350	14499	29710	29710					0.03409596949677507
VDERYDDL	8	Unmodified	_VDERYDDL_					0	0	0			REV__ENST00000401578.2_1_6:80777029-80777566:-|nuORF	REV__ENST00000401578.2_1_6:80777029-80777566:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7321166992188	2	512.732729	1023.4509	-0.22769	-0.00011674	-0.079466	-4.0745E-05	-0.30715	-0.00015749	512.732694347977	42.861	2.1523	42.861	42.454	44.606	0					209	75	4	0	0	0	0.53202	1	8682	8682		6.7232	0	1	2594500	+		21802	11755	14351	14500	29711	29711					-0.05988307449717922
VDFPQGKVME	10	Unmodified	_VDFPQGKVME_					0	0	0			REV__nc|ENSG00000102882|P27361-2|MAPK3	REV__nc|ENSG00000102882|P27361-2|MAPK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.2847900390625	2	575.284074	1148.5536	0.26129	0.00015032	0.58631	0.00033729	0.8476	0.00048761	575.2844658497772	94.619	0.90871	94.657	94.477	95.386	0.038086					44	37	2	0	0	0	0.43214	1	23883	23883		8.1555	1.4324	1	92013	+		21803	8459	14352	14501	29712	29712					-0.014739379825869037
VDFSLWEGEAR	11	Unmodified	_VDFSLWEGEAR_					0	0	0			REV__ENST00000488793.1_1_1:218578572-218607636:+|nuORF	REV__ENST00000488793.1_1_1:218578572-218607636:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.88104248046875	3	436.878815	1307.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.064	1	49.14	48.64	49.64	0.076607								0	0	0	0.33573	1	9897	9897		2.2527	0.51045	1		+		21804	8331	14353	14502	29713	29713					-0.026887096787959308
VDGELVVL	8	Unmodified	_VDGELVVL_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2;ITIH2|p.N310Tfs*8|1|0.09|ENSG00000151655|chr10:7723505-7723505|C/-|frameshift_variant	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.2453918457031	2	422.244744	842.474934	0.082265	3.4736E-05	0.21071	8.8971E-05	0.29297	0.00012371	422.2447337806381	73.376	0.65206	73.428	73.178	73.831	0.052574					54	25	3	0	0	0	0.52502	1	17371	17371		9.3474	0	1	1593700			21805	3468	14354	14503	29714	29714					0.047395777746373824
VDGQYVWFNI	10	Unmodified	_VDGQYVWFNI_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.802978515625	2	620.803488	1239.59242	0.031674	1.9663E-05	1.4499	0.00090009	1.4816	0.00091976	620.8035144959741	70.946	2.0099	70.946	70.708	72.718	0					210	70	6	0	0	0	0.16124	1	16706	16706		38.176	1.6694	1	3255700			21806	3054	14355	14504	29715	29715					-0.017788893565466424
VDGQYVWFNI	10	Unmodified	_VDGQYVWFNI_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.8031005859375	2	620.803488	1239.59242	0.27034	0.00016783	1.2678	0.00078704	1.5381	0.00095486	620.8035467413129	70.848	2.06	70.906	70.689	72.749	0.058578					197	74	5	0	0	0	0.25276	1	16576	16576		27.629	4.8925	1	2577700			21807	3054	14355	14504	29716	29716					-0.017788893565466424
VDGVYMIKG	9	Unmodified	_VDGVYMIKG_					0	0	0			REV__DNMT3A|p.S689C|1|0.19|ENSG00000119772|chr2:25241579-25241579|T/A|missense_variant	REV__DNMT3A|p.S689C|1|0.19|ENSG00000119772|chr2:25241579-25241579|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2482604980469	2	491.257328	980.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.771	1	34.848	34.348	35.348	0.076244								0	0	0	0.27613	1	5598	5598		3.9444	0	1		+		21808	7894	14356	14505	29717	29717					0.009073093055576464
VDIADVAYYF	10	Unmodified	_VDIADVAYYF_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.2846069335938	2	588.284597	1174.55464	0.94909	0.00055833	0.36623	0.00021545	1.3153	0.00077378	588.284975715216	80.617	0.30974	80.64	80.461	80.771	0.023605					17	10	2	0	0	0	0.41688	1	19504	19504		10.074	0.6908	1	106520			21809	2093	14357	14506	29718	29718					-0.025654003420640947
VDIADVAYYF	10	Unmodified	_VDIADVAYYF_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	588.284597	1174.55464	0.98177	0.00057756	0.34491	0.00020291	1.3267	0.00078047	588.785970462026	80.646	0.4435	80.646	80.43	80.873	0	0.0028507	-1.5718E-05	NaN	10.074	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107500			21810	2093	14357	14506							-0.025654003420640947
VDIDELLIS	9	Unmodified	_VDIDELLIS_					0	0	0		tr|U7SE95|U7SE95_FUSNUProteinRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recAPE=3SV=1	tr|U7SE95|U7SE95_FUSNUProteinRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recAPE=3SV=1	tr|U7SE95|U7SE95_FUSNUProteinRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recAPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.77880859375	2	508.779148	1015.54374	0.38201	0.00019436	-0.0079505	-4.045E-06	0.37406	0.00019031	508.7789827938431	102.66	0.43388	102.7	102.53	102.97	0.040916					70	33	3	0	0	0	0.20358	1	26162	26162		18.146	0	1	162070			21811	13440	14358	14507	29719	29719					0.03659197283673166
VDINNLTNF	9	Unmodified	_VDINNLTNF_					0	0	0			REV__ENSG00000116711|ENST00000367466|PLA2G4A	REV__ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7799072265625	2	525.266739	1048.51892	-0.093942	-4.9344E-05	0.58449	0.00030701	0.49055	0.00025767	525.2667491836754	90.33	0.092941	90.364	90.329	90.422	0.034065					5	3	2	0	0	0	0.30005	1	22454	22454		6.7232	0	1	24206	+		21812	8814	14359	14508	29720	29720					-0.00339437799038933
VDISKKSWLF	10	Unmodified	_VDISKKSWLF_					0	0	0		tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1	tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1	tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.3323974609375	2	611.845156	1221.67576	0.13066	7.9942E-05	-0.30457	-0.00018635	-0.17392	-0.00010641	611.84524922471	78.551	0.4489	78.551	78.305	78.754	0					20	15	2	0	0	0	0.29844	1	19032	19032		22.736	2.3217	1	134930			21813	13547	14360	14509	29721	29721					0.07378847091285934
VDKGNIIKP	9	Unmodified	_VDKGNIIKP_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2980651855469	2	492.297842	982.581131	-0.10777	-5.3056E-05	0.1932	9.5112E-05	0.085429	4.2056E-05	492.29791699202474	28.131	0.23055	28.131	28.041	28.271	0					16	9	2	0	0	0	0.30397	1	3763	3763		6.2058	0	1	17947	+		21814	8666	14361	14510	29722	29722					0.08914333339942004
VDKQGFYNLF	10	Unmodified	_VDKQGFYNLF_					0	0	0		tr|U7SSG2|U7SSG2_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01256PE=4SV=1	tr|U7SSG2|U7SSG2_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01256PE=4SV=1	tr|U7SSG2|U7SSG2_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01256PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.811279296875	2	615.811313	1229.60807	0.0093228	5.7411E-06	-0.010504	-6.4687E-06	-0.0011816	-7.2763E-07	615.8112163915682	68.908	0.54787	68.908	68.617	69.165	0					32	20	2	0	0	0	0.30966	1	16079	16079		21.537	0	1	589610			21815	13553	14362	14511	29723	29723					0.002453971604609251
VDKYNQKA	8	Unmodified	_VDKYNQKA_					0	0	0		tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2571716308594	2	483.256174	964.497795	-0.018419	-8.901E-06	0.23819	0.00011511	0.21977	0.00010621	483.25638841050704	36.739	0.78191	36.821	36.536	37.318	0.081715					46	30	2	0	0	0	0.53557	1	6164	6164		4.3292	0.73274	1	38146			21816	13539	14363	14512	29724	29724					0.014125968920893683
VDLNKSLK	8	Unmodified	_VDLNKSLK_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.77630615234375	2	458.776742	915.538931	-0.17525	-8.0399E-05	0.53425	0.0002451	0.359	0.0001647	458.7767150741587	25.589	0.29943	25.681	25.535	25.834	0.091507					34	23	2	0	0	0	0.53118	1	2910	2910		7.2892	0	1	27956			21817	3222	14364	14513	29725	29725					0.07778357931579194
VDLNKSLK	8	Unmodified	_VDLNKSLK_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	458.776742	915.538931	-0.081158	-3.7233E-05	0.16542	7.5893E-05	0.084266	3.8659E-05	458.7766329717083	25.75	0.38396	25.75	25.587	25.971	0	0.034768	-0.00012138	NaN	7.2892	51	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35553			21818	3222	14364	14513							0.07778357931579194
VDLPLWTQI	9	Unmodified	_VDLPLWTQI_					0	0	0			REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.27880859375	2	542.8055	1083.59645	0.61812	0.00033552	-0.42295	-0.00022958	0.19517	0.00010594	542.804921894851	54.235	0.17991	54.301	54.219	54.399	0.065128					9	5	2	0	0	0	0.24635	1	11485	11485		10.824	0	1	67679	+		21819	13078	14365	14514	29726	29726					0.05799200137153093
VDLPTESAI	9	Unmodified	_VDLPTESAI_					0	0	0			REV__ENST00000462657.1_1_3:15731457-15737643:-|nuORF	REV__ENST00000462657.1_1_3:15731457-15737643:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.7503356933594	2	472.75039	943.486227	0.17283	8.1707E-05	-0.5595	-0.00026451	-0.38667	-0.0001828	472.75016351295693	67.719	0.56122	67.719	67.46	68.021	0					37	21	2	0	0	0	0.19376	1	15738	15738		25.399	0	1	222960	+		21820	10986	14366	14515	29727	29727					0.012223550780959158
VDLPTESAI	9	Unmodified	_VDLPTESAI_					0	0	0			REV__ENST00000462657.1_1_3:15731457-15737643:-|nuORF	REV__ENST00000462657.1_1_3:15731457-15737643:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.75042724609375	2	472.75039	943.486227	0.3441	0.00016268	-0.60342	-0.00028527	-0.25931	-0.00012259	472.7500755036357	67.697	0.49278	67.76	67.526	68.019	0.063507					28	16	2	0	0	0	0.23216	1	15616	15616		14.838	0	1	275860	+		21821	10986	14366	14515	29728	29728					0.012223550780959158
VDLPTESAI	9	Unmodified	_VDLPTESAI_					0	0	0			REV__ENST00000462657.1_1_3:15731457-15737643:-|nuORF	REV__ENST00000462657.1_1_3:15731457-15737643:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2582702636719	2	472.75039	943.486227	0.3441	0.00016268	-0.60342	-0.00028527	-0.25931	-0.00012259	472.7500755036357	67.697	0.49278	67.76	67.526	68.019	0.063507					28	16	2	0	0	0	0.2229	1	15545	15545		19.257	0	1	275860	+		21822	10986	14366	14515	29729	29729					0.012223550780959158
VDLSLGVTKL	10	Unmodified	_VDLSLGVTKL_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.8185424804688	2	522.818607	1043.62266	0.41605	0.00021752	-0.21234	-0.00011101	0.20371	0.0001065	522.818428407082	68.046	0.73653	68.11	67.904	68.64	0.063507					72	27	3	0	0	0	0.43214	1	15780	15780		8.1555	0	1	1269100	+		21823	9769	14367	14516	29730	29730					0.10259469308630287
VDMASRFNFPL	11	Unmodified	_VDMASRFNFPL_					0	0	0		tr|U7SU68|U7SU68_FUSNUCobalt-precorrin-2C(20)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01039PE=3SV=1	tr|U7SU68|U7SU68_FUSNUCobalt-precorrin-2C(20)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01039PE=3SV=1	tr|U7SU68|U7SU68_FUSNUCobalt-precorrin-2C(20)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01039PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.8852233886719	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.669	1	95.708	95.208	96.208	0.038872								0	0	0	0.34068	1	24072	24072		0.50596	0	1				21824	13597	14368	14517	29731	29731					-0.002748713086020871
VDNREEKVRL	10	Unmodified	_VDNREEKVRL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3493041992188	2	629.349126	1256.6837	0.14802	9.3157E-05	0.033999	2.1397E-05	0.18202	0.00011455	629.3491868925952	19.248	0.6881	19.343	19.158	19.846	0.095232					219	78	4	0	0	0	0.029684	2	1224	1224;1285		63.227	0	1	448190			21825	5179	14369	14518	29732;29733	29732					0.06562374340751376
VDPEGFQADF	10	Unmodified	_VDPEGFQADF_					0	0	0		ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2509155273438	2	562.748379	1123.4822	0.46995	0.00026447	1.4303	0.00080488	1.9002	0.0010693	562.7491858337789	102.37	0.46121	102.41	102.23	102.69	0.040909					70	33	3	0	0	0	0.44496	1	26075	26075		5.7319	0.50118	1	173730			21826	1766	14370	14519	29734	29734					-0.07459734415624553
VDPEISMLL	9	Unmodified	_VDPEISMLL_					0	0	0			REV__nc|ENSG00000082175|P06401-4|PGR	REV__nc|ENSG00000082175|P06401-4|PGR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7431945800781	2	508.770268	1015.52598	0.11229	5.7132E-05	3.2788	0.0016681	3.391	0.0017253	508.7721015224244	35.332	0.37928	35.411	35.302	35.682	0.078831					19	14	2	0	0	0	0.25579	1	5805	5805		1.8442	0	1	19042	+		21827	8247	14371	14520	29735	29735					0.018841587571614582
VDPHDRHGL	9	Unmodified	_VDPHDRHGL_					0	0	0			REV__ENST00000484330.5_1_5:60198317-60214439:-|nuORF	REV__ENST00000484330.5_1_5:60198317-60214439:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7852783203125	2	523.262322	1044.51009	0.1903	9.9576E-05	-0.73809	-0.00038622	-0.54779	-0.00028664	523.2620802195726	46.885	0.38354	46.968	46.741	47.124	0.083096					23	14	2	0	0	0	0.25376	1	9267	9267		6.2058	0	1	81237	+		21828	12114	14372	14521	29736	29736					-0.010383666448660733
VDPVEVDVSP	10	Unmodified	_VDPVEVDVSP_					0	0	0			REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2660522460938	2	528.266404	1054.51826	0.44457	0.00023485	-0.48317	-0.00025524	-0.038599	-2.039E-05	528.2659217777391	83.225	0.55294	83.225	82.872	83.425	0					23	18	2	0	0	0	0.22666	1	20464	20464		30.637	11.38	1	91717	+		21829	7702	14373	14522	29737	29737					-0.006822772387522491
VDPVEVDVSP	10	Unmodified	_VDPVEVDVSP_					0	0	0			REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2660522460938	2	528.266404	1054.51826	0.26162	0.00013821	0.29415	0.00015539	0.55578	0.0002936	528.2662558702145	83.269	0.48221	83.291	82.931	83.414	0.021744					23	16	2	0	0	0	0.06954	1	20279	20279		52.268	24.64	1	75314	+		21830	7702	14373	14522	29738	29738					-0.006822772387522491
VDPVEVDVSP	10	Unmodified	_VDPVEVDVSP_					0	0	0			REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	528.266404	1054.51826	0.44457	0.00023485	-0.48317	-0.00025524	-0.038599	-2.039E-05	528.2659217777391	83.225	0.55294	83.225	82.872	83.425	0	-0.033001	-0.0004432	NaN	52.268	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91717	+		21831	7702	14373	14522							-0.006822772387522491
VDPVEVDVSP	10	Unmodified	_VDPVEVDVSP_					0	0	0			REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	528.266404	1054.51826	0.26162	0.00013821	0.29415	0.00015539	0.55578	0.0002936	528.2662558702145	83.269	0.48221	83.291	82.931	83.414	0.021744	0.033001	0.00037807	NaN	52.268	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75314	+		21832	7702	14373	14522							-0.006822772387522491
VDQELGERHF	10	Unmodified	_VDQELGERHF_					0	0	0			REV__ENST00000426678.1_1_3:48720334-48723728:-|nuORF	REV__ENST00000426678.1_1_3:48720334-48723728:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.87139892578125	3	410.53516	1228.58365	0.31316	0.00012856	2.6485	0.0010873	2.9616	0.0012159	410.8707195906771	73.743	0.50275	73.743	73.446	73.949	0					27	17	2	0	0	0	0.46746	1	17559	17559		0.62683	0	1	116610	+		21833	11833	14374	14523	29739	29739					-0.02149862993064744
VDRSVSSSL	9	Unmodified	_VDRSVSSSL_					0	0	0		SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant	SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.22589111328125	2	475.251089	948.487624	-0.47699	-0.00022669	-0.45172	-0.00021468	-0.92872	-0.00044137	475.2508459060306	24.551	0.42134	24.551	24.369	24.79	0					49	30	2	0	0	0	0.25579	1	2738	2738		4.3292	0	1	27730			21834	2941	14375	14524	29740	29740					0.01131989166879066
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		OBSCN-CASZ1|1|fusion;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1982116699219	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.673	1	14.673	14.173	15.173	0								0	0	0	0.34018	1	415	415		0	0	1				21835	3557	14376	14525	29741	29741					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		OBSCN-CASZ1|1|fusion;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1983337402344	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.893	1	14.893	14.393	15.393	0								0	0	0	0.34018	1	454	454		0	0	1				21836	3557	14376	14525	29742	29742					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		OBSCN-CASZ1|1|fusion;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1982421875	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.099	1	15.099	14.599	15.599	0								0	0	0	0.34018	1	489	489		0	0	1				21837	3557	14376	14525	29743	29743					-0.09429177100389552
VDSDPVLRR	9	Unmodified	_VDSDPVLRR_					0	0	0			REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF	REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2509155273438	2	528.793455	1055.57236	-0.25435	-0.0001345	2.988	0.00158	2.7336	0.0014455	528.795211534743	42.366	0.62788	42.456	42.21	42.838	0.089764					32	22	2	0	0	0	0.2446	1	7888	7888		11.64	0.81637	1	71797	+		21838	9759	14377	14526	29744	29744					0.046793597034593404
VDSLEGEDFE	10	Unmodified	_VDSLEGEDFE_					0	0	0		ENSG00000163596|ENST00000358299|ICA1L	ENSG00000163596|ENST00000358299|ICA1L	ENSG00000163596|ENST00000358299|ICA1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2412109375	2	570.240583	1138.46661	0.15288	8.7177E-05	1.1342	0.00064676	1.2871	0.00073393	570.2411776204827	49.483	0.71529	49.483	49.253	49.968	0					33	24	2	0	0	0	0.43972	1	10166	10166		6.7232	0	1	154790			21839	3922	14378	14527	29745	29745					-0.09708065723316395
VDSLEGEDFE	10	Unmodified	_VDSLEGEDFE_					0	0	0		ENSG00000163596|ENST00000358299|ICA1L	ENSG00000163596|ENST00000358299|ICA1L	ENSG00000163596|ENST00000358299|ICA1L	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	570.240583	1138.46661	0.15288	8.7177E-05	1.1342	0.00064676	1.2871	0.00073393	570.2411776204827	49.483	0.71529	49.483	49.253	49.968	0	-0.012593	-8.7815E-05	NaN	6.7232	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154790			21840	3922	14378	14527							-0.09708065723316395
VDSTNQSL	8	Unmodified	_VDSTNQSL_					0	0	0		nc|ENSG00000120158|Q9Y2P8-2|RCL1;ENSG00000120158|ENST00000381750|RCL1;AK3-RCL1|1|fusion	nc|ENSG00000120158|Q9Y2P8-2|RCL1	nc|ENSG00000120158|Q9Y2P8-2|RCL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.8851318359375	2	432.208889	862.403226	0.2626	0.0001135	-0.3645	-0.00015754	-0.1019	-4.4041E-05	432.2086662323412	39.24	0.65681	39.24	38.976	39.633	0					64	24	4	0	0	0	0.35759	1	7101	7101		11.64	2.2572	1	509360			21841	20	14379	14528	29746	29746					-0.033479616498880205
VDSTNQSL	8	Unmodified	_VDSTNQSL_					0	0	0		nc|ENSG00000120158|Q9Y2P8-2|RCL1;ENSG00000120158|ENST00000381750|RCL1;AK3-RCL1|1|fusion	nc|ENSG00000120158|Q9Y2P8-2|RCL1	nc|ENSG00000120158|Q9Y2P8-2|RCL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	432.208889	862.403226	0.067368	2.9117E-05	-0.14614	-6.3165E-05	-0.078776	-3.4048E-05	432.2087542261794	39.109	0.52444	39.196	38.967	39.492	0.08688	-0.022027	7.0234E-05	NaN	28.487	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462930			21842	20	14379	14528							-0.033479616498880205
VDSYLPVIL	9	Unmodified	_VDSYLPVIL_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7948303222656	2	509.794601	1017.57465	0.36678	0.00018698	-0.51434	-0.00026221	-0.14756	-7.5224E-05	509.79424678919275	100.71	0.40519	100.71	100.48	100.89	0					38	24	2	0	0	0	0.25979	1	25786	25786		11.64	0	1	81164			21843	5320	14380	14529	29747	29747					0.06656395388563396
VDSYLPVIL	9	Unmodified	_VDSYLPVIL_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	509.794601	1017.57465	0.36678	0.00018698	-0.51434	-0.00026221	-0.14756	-7.5224E-05	509.79424678919275	100.71	0.40519	100.71	100.48	100.89	0	0.0054542	1.8978E-05	NaN	11.64	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81164			21844	5320	14380	14529							0.06656395388563396
VDSYLPVIL	9	Unmodified	_VDSYLPVIL_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	509.794601	1017.57465	0.45638	0.00023266	-0.7734	-0.00039427	-0.31702	-0.00016161	509.79424748731725	100.66	0.37505	100.7	100.54	100.91	0.042839	-0.0054542	-0.00024516	NaN	11.64	27	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62668			21845	5320	14380	14529							0.06656395388563396
VDTHKKQI	8	Unmodified	_VDTHKKQI_					0	0	0		ENST00000558735.1_1_15:44581347-44620963:+|nuORF;ENST00000429162.2_1_15:44581227-44599615:+|nuORF;nc|ENSG00000166734|Q6P4E1-3|GOLM2;nc|ENSG00000166734|Q6P4E1-2|GOLM2;nc|ENSG00000166734|Q6P4E1-5|GOLM2;ENSG00000166734|ENST00000299957|GOLM2	ENST00000558735.1_1_15:44581347-44620963:+|nuORF	ENST00000558735.1_1_15:44581347-44620963:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2478332519531	2	484.779816	967.545079	-0.29687	-0.00014392	-0.17553	-8.5094E-05	-0.4724	-0.00022901	484.7796850975178	40.069	0.4481	40.158	39.96	40.408	0.088562					25	16	2	0	0	0	0.3576	1	7245	7245		4.756	0	1	52773			21846	4174	14381	14530	29748	29748					0.06000876163091107
VDTIYFSI	8	Unmodified	_VDTIYFSI_					0	0	0			REV__nc|ENSG00000102755|P17948-2|FLT1	REV__nc|ENSG00000102755|P17948-2|FLT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.24822998046875	2	479.250026	956.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.305	1	64.305	63.805	64.805	0								0	0	0	0.38652	1	14673	14673		16.942	0	1		+		21847	8456	14382	14531	29749	29749					0.005515604290508236
VDTRVMEQK	9	Unmodified	_VDTRVMEQK_					0	0	0			REV__ENSG00000132669|ENST00000255006|RIN2	REV__ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2672729492188	2	553.287148	1104.55974	-0.11793	-6.5251E-05	-3.2699	-0.0018092	-3.3878	-0.0018744	553.2850863550098	40.459	0.34201	40.459	40.281	40.623	0					13	11	2	0	0	0	0.33978	1	7474	7474		1.4819	0.79152	1	20837	+		21848	9124	14383	14532	29750	29750					0.011645802489283597
VDVDMSVQQL	10	Unmodified	_VDVDMSVQQL_					0	0	0			REV__ENST00000440089.1_1_15:83379297-83380318:-|nuORF	REV__ENST00000440089.1_1_15:83379297-83380318:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2957763671875	2	567.278989	1132.54342	0.46737	0.00026513	0.85079	0.00048264	1.3182	0.00074777	567.2792017084973	55.271	0.62259	55.271	55.04	55.662	0					60	22	3	0	0	0	0.33099	1	12036	12036		19.257	2.3147	1	867140	+		21849	11881	14384	14533	29751	29751					-0.01754545707831312
VDVDSLAEL	9	Unmodified	_VDVDSLAEL_					0	0	0		ENST00000468069.1_1_1:213302889-213349922:+|nuORF;nc|ENSG00000136643|Q96S38-2|RPS6KC1;ENSG00000136643|ENST00000366960|RPS6KC1	ENST00000468069.1_1_1:213302889-213349922:+|nuORF	ENST00000468069.1_1_1:213302889-213349922:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7479248046875	2	480.747847	959.481142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.794	1	72.847	72.347	73.347	0.053001								0	0	0	0.2428	1	17104	17104		10.824	0.75	1				21850	2800	14385	14534	29752	29752					-0.00021948784524283838
VDVHRVSLT	9	Unmodified	_VDVHRVSLT_					0	0	0		ENST00000425128.6_1_3:27417698-27417842:-|nuORF	ENST00000425128.6_1_3:27417698-27417842:-|nuORF	ENST00000425128.6_1_3:27417698-27417842:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2906494140625	2	513.290548	1024.56654	0.030627	1.572E-05	-0.0034645	-1.7783E-06	0.027162	1.3942E-05	513.2904645037935	33.518	0.90491	33.592	33.401	34.305	0.074322					79	36	4	0	0	0	0.33704	1	5292	5292		1.8442	0	1	329340			21851	6465	14386	14535	29753	29753					0.055242611917947215
VDVRVGHDLL	10	Unmodified	_VDVRVGHDLL_					0	0	0			REV__ENSG00000101445|ENST00000299824|PPP1R16B	REV__ENSG00000101445|ENST00000299824|PPP1R16B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8177490234375	2	561.81693	1121.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.388	1	96.388	95.888	96.888	0								0	0	0	0.33681	1	24449	24449		3.9444	1.6417	1		+		21852	8428	14387	14536	29754	29754					0.06336219254626485
VDWMWPRR	8	Unmodified	_VDWMWPRR_					0	0	0		ENST00000291295.13_1_19:47112759-47113158:+|nuORF	ENST00000291295.13_1_19:47112759-47113158:+|nuORF	ENST00000291295.13_1_19:47112759-47113158:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2861328125	2	573.287285	1144.56002	0.15289	8.7649E-05	-1.7754	-0.0010178	-1.6225	-0.00093016	573.2863137916659	18.424	0.15928	18.514	18.4	18.559	0.089705					32	19	2	0	0	0	0.53858	1	1048	1048		2.3027	0.4585	1	18106			21853	5947	14388	14537	29755	29755					-0.00647955240583542
VEALEFEVF	9	Unmodified	_VEALEFEVF_					0	0	0			REV__ENST00000456578.6_1_1:40205841-40207105:+|nuORF	REV__ENST00000456578.6_1_1:40205841-40207105:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7560424804688	2	541.773865	1081.53318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.928	1	80.928	80.428	81.428	0								0	0	0	0.23884	1	19746	19746		11.64	0	1		+		21854	11949	14389	14538	29756	29756					-0.004327853707536633
VEATHTDVSH	10	Unmodified	_VEATHTDVSH_					0	0	0			REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF	REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7278442382812	2	548.256902	1094.49925	-0.042061	-2.306E-05	0.41242	0.00022611	0.37036	0.00020305	548.2571418981269	29.005	0.23762	29.083	28.96	29.197	0.078287					25	16	2	0	0	0	0.31794	1	3854	3854		3.5965	1.7523	1	26434	+		21855	12203	14390	14539	29757	29757					-0.04421813809813102
VEAWPVSSL	9	Unmodified	_VEAWPVSSL_					0	0	0			REV__ENSG00000181652|ENST00000639579|ATG9B	REV__ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2608947753906	2	494.260925	986.507297	0.30214	0.00014934	-0.11391	-5.6304E-05	0.18823	9.3033E-05	494.2606711394734	103.78	0.43287	103.78	103.62	104.06	0					81	44	3	0	0	0	0.12809	3	26661	26661;26696;26733		26.884	7.4447	1	271430	+		21856	10536	14391	14540	29758;29759;29760	29758					0.01350365177609092
VEAWPVSSL	9	Unmodified	_VEAWPVSSL_					0	0	0			REV__ENSG00000181652|ENST00000639579|ATG9B	REV__ENSG00000181652|ENST00000639579|ATG9B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.3194885253906	2	494.260925	986.507297	0.30214	0.00014934	-0.11391	-5.6304E-05	0.18823	9.3033E-05	494.2606711394734	103.78	0.43287	103.78	103.62	104.06	0					81	44	3	0	0	0	0.23975	1	26650	26650		14.838	14.838	1	271430	+		21857	10536	14391	14540	29761	29761					0.01350365177609092
VEAWPVSSL	9	Unmodified	_VEAWPVSSL_					0	0	0			REV__ENSG00000181652|ENST00000639579|ATG9B	REV__ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.26068115234375	2	494.260925	986.507297	0.46578	0.00023022	-0.33483	-0.00016549	0.13095	6.4724E-05	494.2606559987376	103.78	0.37389	103.81	103.62	104	0.03791					53	37	2	0	0	0	0.092418	1	26505	26505		34.102	7.7612	1	237830	+		21858	10536	14391	14540	29762	29762					0.01350365177609092
VEAWPVSSL	9	Unmodified	_VEAWPVSSL_					0	0	0			REV__ENSG00000181652|ENST00000639579|ATG9B	REV__ENSG00000181652|ENST00000639579|ATG9B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2608337402344	2	494.260925	986.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.87	1	103.91	103.41	104.41	0.03791								0	0	0	0.21527	1	26542	26542		15.847	1.9411	1		+		21859	10536	14391	14540	29763	29763					0.01350365177609092
VEAWPVSSL	9	Unmodified	_VEAWPVSSL_					0	0	0			REV__ENSG00000181652|ENST00000639579|ATG9B	REV__ENSG00000181652|ENST00000639579|ATG9B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2612609863281	2	494.260925	986.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.99	1	104.03	103.53	104.53	0.03791								0	0	0	0.18435	1	26576	26576		20.454	2.3073	1		+		21860	10536	14391	14540	29764	29764					0.01350365177609092
VEDELVKKY	9	Unmodified	_VEDELVKKY_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7435913085938	2	561.805697	1121.59684	-0.042535	-2.3896E-05	-0.19238	-0.00010808	-0.23492	-0.00013198	561.8054824691758	33.152	0.3921	33.152	32.958	33.35	0					24	15	2	0	0	0	0.259	1	5229	5229		1.6526	0	1	35991			21861	407	14392	14541	29765	29765					0.04090575066334168
VEDIIIHTF	9	Unmodified	_VEDIIIHTF_					0	0	0			REV__ENSG00000156414|ENST00000409874|TDRD9	REV__ENSG00000156414|ENST00000409874|TDRD9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.784423828125	2	543.795132	1085.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.355	1	55.42	54.92	55.92	0.065128								0	0	0	0.14119	1	11809	11809		26.884	7.6267	1		+		21862	9755	14393	14542	29766	29766					0.036346097574551095
VEDIVIYL	8	Unmodified	_VEDIVIYL_					0	0	0		ENST00000503498.1_1_3:129133914-129140362:-|nuORF;ENST00000514900.5_1_3:129122974-129137267:-|nuORF;ENSG00000172771|ENST00000505956|EFCAB12	ENST00000503498.1_1_3:129133914-129140362:-|nuORF	ENST00000503498.1_1_3:129133914-129140362:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7815246582031	2	482.273501	962.532449	0.18403	8.875E-05	-0.22428	-0.00010816	-0.040253	-1.9413E-05	482.27330812694146	91.684	0.52982	91.684	91.458	91.988	0					24	19	2	0	0	0	0.35759	1	23034	23034		9.3474	0	1	105580			21863	4511	14394	14543	29767	29767					0.04968419980161798
VEDKDLVL	8	Unmodified	_VEDKDLVL_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7607116699219	2	465.760758	929.506963	0.20684	9.6337E-05	0.081614	3.8013E-05	0.28845	0.00013435	465.76056751301155	78.459	0.33753	78.489	78.374	78.712	0.030159					18	11	2	0	0	0	0.46028	1	18851	18851		18.146	0	1	193780	+		21864	10675	14395	14544	29768	29768					0.039389454577644756
VEDLWELAL	9	Unmodified	_VEDLWELAL_					0	0	0			REV__ENST00000452211.5_2_3:48341958-48342785:-|nuORF	REV__ENST00000452211.5_2_3:48341958-48342785:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.803466796875	2	544.28714	1086.55973	0.59046	0.00032138	0.014931	8.1268E-06	0.60539	0.00032951	544.2871940449246	97.28	0.55547	97.321	97.076	97.632	0.040855					46	26	2	0	0	0	0.21398	1	24576	24576		16.942	2.104	1	143410	+		21865	11935	14396	14545	29769	29769					0.019909035205500913
VEEENPDF	8	Unmodified	_VEEENPDF_					0	0	0		ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000163286|ENST00000295453|ALPG;ENSG00000163283|ENST00000392027|ALPP	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7059326171875	2	489.70618	977.397806	0.18745	9.1795E-05	-0.4684	-0.00022938	-0.28095	-0.00013758	489.705867812022	86.551	0.47984	86.578	86.26	86.74	0.027573					23	20	2	0	0	0	0.53345	1	21324	21324		5.7604	0	1	155400			21866	25	14397	14546	29770	29770					-0.09179685232368229
VEEENPDF	8	Unmodified	_VEEENPDF_					0	0	0		ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000163286|ENST00000295453|ALPG;ENSG00000163283|ENST00000392027|ALPP	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	489.70618	977.397806	0.021623	1.0589E-05	-0.56222	-0.00027532	-0.5406	-0.00026473	489.70584598696354	86.596	0.29919	86.596	86.383	86.683	0	0.0089982	-4.9896E-05	NaN	5.7604	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249760			21867	25	14397	14546							-0.09179685232368229
VEEETVEVLT	10	Unmodified	_VEEETVEVLT_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2913208007812	2	574.290076	1146.5656	0.1274	7.3162E-05	1.1699	0.00067184	1.2973	0.000745	574.291082294017	35.59	5.0522	35.59	35.289	40.341	0					518	187	5	0	0	0	0.036485	7	5995	5909;5995;6036;6074;6207;6302;6345		61.357	15.337	1	8357100	+		21868	8677	14398	14547	29771;29772;29773;29774;29775;29776;29777	29772					-0.0018204275843345386
VEEETVEVLT	10	Unmodified	_VEEETVEVLT_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.291015625	2	574.290076	1146.5656	0.16034	9.2081E-05	1.1336	0.00065102	1.2939	0.0007431	574.2910473762183	35.506	4.4992	35.585	35.279	39.778	0.078827					435	173	5	0	0	0	0.036485	3	5887	5887;5931;6068		61.357	8.047	1	7724500	+		21869	8677	14398	14547	29778;29779;29780	29778					-0.0018204275843345386
VEEGCEDRIL	10	Unmodified	_VEEGCEDRIL_					0	0	0		nc|ENSG00000165983|Q96BW5-2|PTER;ENSG00000165983|ENST00000535784|PTER	nc|ENSG00000165983|Q96BW5-2|PTER	nc|ENSG00000165983|Q96BW5-2|PTER	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7745361328125	2	581.774071	1161.53359	0.65443	0.00038073	-0.23783	-0.00013836	0.4166	0.00024237	581.7743155969057	67.305	1.3972	67.305	67.011	68.408	0					102	52	4	0	0	0	0.34138	1	15559	15559		18.146	1.2041	1	2105600			21870	4121	14399	14548	29781	29781					-0.040717337132036846
VEEYHIEFL	9	Unmodified	_VEEYHIEFL_					0	0	0		ZCWPW2|p.Q278Hfs*21|1|0.48|ENSG00000206559|chr3:28521041-28521041|G/-|frameshift_variant;ENSG00000206559|ENST00000383768|ZCWPW2	ZCWPW2|p.Q278Hfs*21|1|0.48|ENSG00000206559|chr3:28521041-28521041|G/-|frameshift_variant	ZCWPW2|p.Q278Hfs*21|1|0.48|ENSG00000206559|chr3:28521041-28521041|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3433227539062	2	589.790047	1177.56554	0.34885	0.00020575	0.0074509	4.3945E-06	0.3563	0.00021014	589.7901011421048	86.897	0.52288	86.924	86.653	87.176	0.027573					42	23	2	0	0	0	0.2298	1	21426	21426		16.942	16.942	1	509070			21871	5535	14400	14549	29782	29782					-0.016139979677518568
VEEYLLFIL	9	Unmodified	_VEEYLLFIL_					0	0	0		nc|ENSG00000115339|Q14435-2|GALNT3	nc|ENSG00000115339|Q14435-2|GALNT3	nc|ENSG00000115339|Q14435-2|GALNT3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7533569335938	2	569.823358	1137.63216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.101	1	24.101	23.601	24.601	0								0	0	0	0.2927	1	2590	2590		0.52476	0	1				21872	7486	14401	14550	29783	29783					0.06885237594133287
VEFAPVLLL	9	Unmodified	_VEFAPVLLL_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.8075866699219	2	500.807511	999.600469	0.28713	0.0001438	0.16653	8.3401E-05	0.45366	0.0002272	500.8074985820484	106.92	0.84127	106.94	106.59	107.43	0.025711					268	83	4	0	0	0	0.17247	1	27302	27302		21.747	0	1	1726200			21873	1484	14402	14551	29784	29784					0.10065289630870211
VEFSFSLFF	9	Unmodified	_VEFSFSLFF_					0	0	0			REV__ENST00000216297.6_1_14:21820582-21820828:-|nuORF	REV__ENST00000216297.6_1_14:21820582-21820828:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7813720703125	2	561.778951	1121.54335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.247	1	89.279	88.779	89.779	0.032257								0	0	0	0.23884	1	22115	22115		11.64	2.2572	1		+		21874	11173	14403	14552	29785	29785					-0.012561776455186191
VEFSSLVVL	9	Unmodified	_VEFSSLVVL_					0	0	0			REV__ENST00000569558.5_1_16:90095949-90097840:+|nuORF	REV__ENST00000569558.5_1_16:90095949-90097840:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7872619628906	2	496.786776	991.558998	0.61005	0.00030307	-0.18822	-9.3504E-05	0.42184	0.00020956	496.78652625762663	83.272	1.2867	83.272	82.928	84.215	0					79	43	3	0	0	0	0.083504	1	20670	20670		36.044	1.9418	1	737350	+		21875	12516	14404	14553	29786	29786					0.06288108871547138
VEGLFFKDLK	10	Unmodified	_VEGLFFKDLK_					0	0	0		ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3401489257812	2	598.339707	1194.66486	-0.10514	-6.2907E-05	1.034	0.00061869	0.92888	0.00055579	598.3403378071077	58.524	0.56335	58.524	58.416	58.979	0					45	19	3	0	0	0	0.36006	1	12912	12912		16.149	0	1	575140			21876	3207	14405	14554	29787	29787					0.0753144471698306
VEGLFFKDLK	10	Unmodified	_VEGLFFKDLK_					0	0	0		ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3399658203125	2	598.339707	1194.66486	0.11678	6.9875E-05	0.78411	0.00046916	0.90089	0.00053904	598.3402133003971	58.493	0.5789	58.564	58.366	58.945	0.070477					49	19	4	0	0	0	0.42901	1	12800	12800		8.7454	0	1	536330			21877	3207	14405	14554	29788	29788					0.0753144471698306
VEGLFFKDLK	10	Unmodified	_VEGLFFKDLK_					0	0	0		ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	598.339707	1194.66486	-0.10514	-6.2907E-05	1.034	0.00061869	0.92888	0.00055579	598.3403378071077	58.524	0.56335	58.524	58.416	58.979	0	-0.019655	0.00018294	NaN	16.149	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575140			21878	3207	14405	14554							0.0753144471698306
VEGLFFKDLK	10	Unmodified	_VEGLFFKDLK_					0	0	0		ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	598.339707	1194.66486	0.11678	6.9875E-05	0.78411	0.00046916	0.90089	0.00053904	598.3402133003971	58.493	0.5789	58.564	58.366	58.945	0.070477	0.019655	-0.00011612	NaN	16.149	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536330			21879	3207	14405	14554							0.0753144471698306
VEHLHNFILF	10	Unmodified	_VEHLHNFILF_					0	0	0		ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3038330078125	2	634.842948	1267.67134	0.074604	4.7362E-05	4.4755	0.0028412	4.5501	0.0028886	634.8459431458963	52.901	0.35112	52.901	52.788	53.139	0					18	12	2	0	0	0	0.31834	1	11229	11229		1.6526	0.17072	1	69895			21880	2007	14406	14555	29789	29789					0.04821382668365004
VEHLHNFILF	10	Unmodified	_VEHLHNFILF_					0	0	0		ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	634.842948	1267.67134	0.32561	0.00020671	5.0125	0.0031822	5.3382	0.0033889	634.8461570924654	52.987	0.17485	53.053	52.909	53.084	0.06543	0.076086	0.00036936	NaN	1.6526	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51805			21881	2007	14406	14555							0.04821382668365004
VEHLTVPLI	9	Unmodified	_VEHLTVPLI_					0	0	0		ENST00000503518.2_1_4:2967477-2967627:+|nuORF	ENST00000503518.2_1_4:2967477-2967627:+|nuORF	ENST00000503518.2_1_4:2967477-2967627:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.254150390625	2	510.808042	1019.60153	0.33304	0.00017012	-0.24839	-0.00012688	0.084651	4.324E-05	510.8078504898116	71.486	0.5141	71.486	71.269	71.783	0					29	17	2	0	0	0	0.2446	1	16867	16867		11.64	0	1	111550			21882	6873	14407	14556	29790	29790					0.09251503999769284
VEHQFGAQ	8	Unmodified	_VEHQFGAQ_					0	0	0		ENSG00000076513|ENST00000261739|ANKRD13A	ENSG00000076513|ENST00000261739|ANKRD13A	ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.2194519042969	2	458.219591	914.42463	0.23451	0.00010746	-0.32793	-0.00015026	-0.093417	-4.2806E-05	458.2193888299026	35.584	0.55155	35.584	35.417	35.969	0					25	20	2	0	0	0	0.4433	1	5982	5982		20.454	1.0146	1	35762			21883	843	14408	14557	29791	29791					-0.036005318305228684
VEHQFGAQ	8	Unmodified	_VEHQFGAQ_					0	0	0		ENSG00000076513|ENST00000261739|ANKRD13A	ENSG00000076513|ENST00000261739|ANKRD13A	ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.2195739746094	2	458.219591	914.42463	0.049042	2.2472E-05	-0.16301	-7.4695E-05	-0.11397	-5.2223E-05	458.2195112936367	35.522	0.60792	35.601	35.382	35.99	0.078831					34	22	2	0	0	0	0.4433	1	5816	5816		20.454	2.3186	1	41699			21884	843	14408	14557	29792	29792					-0.036005318305228684
VEHYKKAPIF	10	Unmodified	_VEHYKKAPIF_					0	0	0		nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1;ENSG00000071051|ENST00000233154|NCK2	nc|ENSG00000158092|P16333-2|NCK1	nc|ENSG00000158092|P16333-2|NCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.2326354980469	3	411.232641	1230.67609	0.37892	0.00015582	-0.25967	-0.00010678	0.11925	4.9038E-05	411.2324880386457	48.854	1.536	48.854	48.399	49.935	0					131	53	5	0	0	0	0.37812	1	9964	9964		14.218	3.3192	1	858550			21885	3678	14409	14558	29793	29793					0.06998266811115172
VEHYKKAPIF	10	Unmodified	_VEHYKKAPIF_					0	0	0		nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1;ENSG00000071051|ENST00000233154|NCK2	nc|ENSG00000158092|P16333-2|NCK1	nc|ENSG00000158092|P16333-2|NCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.2325439453125	3	411.232641	1230.67609	-0.053927	-2.2177E-05	0.22935	9.4318E-05	0.17543	7.2141E-05	411.23268292010033	48.721	1.1777	48.798	48.182	49.359	0.076607					108	40	4	0	0	0	0.37812	1	9788	9788		14.218	1.9906	1	1057800			21886	3678	14409	14558	29794	29794					0.06998266811115172
VEIFNFGF	8	Unmodified	_VEIFNFGF_					0	0	0		ENST00000519604.5_1_20:61919324-61919672:+|nuORF	ENST00000519604.5_1_20:61919324-61919672:+|nuORF	ENST00000519604.5_1_20:61919324-61919672:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.74420166015625	2	486.744911	971.475269	-0.097844	-4.7625E-05	-1.8081	-0.00088008	-1.9059	-0.00092771	486.7440875211067	104.95	0.27869	104.95	104.79	105.07	0					39	27	2	0	0	0	0.46914	2	26999	26999;27037		16.942	4.4107	1	81114			21887	6948	14410	14559	29795;29796	29795					-0.011610025055233564
VEIYDRREY	9	Unmodified	_VEIYDRREY_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.5348815917969	3	414.875293	1241.60405	0.29685	0.00012316	-0.56018	-0.0002324	-0.26333	-0.00010925	414.87506730969477	35.378	0.87385	35.378	35.148	36.022	0					44	32	2	0	0	0	0.25989	1	5939	5939		0.77653	0	1	48536			21888	2978	14411	14560	29797	29797					-0.007086923332508377
VEKGFRTLL	9	Unmodified	_VEKGFRTLL_					0	0	0		ENST00000524141.5_1_8:48192552-48196623:+|nuORF	ENST00000524141.5_1_8:48192552-48196623:+|nuORF	ENST00000524141.5_1_8:48192552-48196623:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.3050537109375	2	531.818941	1061.62333	0.25975	0.00013814	3.3857	0.0018006	3.6455	0.0019387	532.3232802947063	74.072	0.37311	74.072	73.857	74.23	0					14	13	2	0	0	0	0.16392	1	17621	17621		22.736	0.98964	1	224330			21889	6978	14412	14561	29798	29798					0.09498308748334239
VEKKDETPF	9	Unmodified	_VEKKDETPF_					0	0	0		ENST00000530298.5_1_1:156807654-156845592:+|nuORF;nc|ENSG00000198400|P04629-4|NTRK1;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1	ENST00000530298.5_1_1:156807654-156845592:+|nuORF	ENST00000530298.5_1_1:156807654-156845592:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3231811523438	2	546.782222	1091.54989	0.16612	9.0829E-05	0.24302	0.00013288	0.40913	0.00022371	547.2835154659275	72.852	0.2587	72.905	72.718	72.977	0.052567					13	8	2	0	0	0	0.25416	1	17073	17073		5.2307	0	1	73290			21890	5364	14413	14562	29799	29799					0.007777155151643456
VEKNSYYN	8	Unmodified	_VEKNSYYN_					0	0	0			REV__tr|U7T169|U7T169_FUSNUPeptidaseC39-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00712PE=4SV=1	REV__tr|U7T169|U7T169_FUSNUPeptidaseC39-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00712PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2823791503906	2	508.737814	1015.46108	0.27491	0.00013986	-0.67225	-0.000342	-0.39734	-0.00020214	508.7379587717142	37.914	0.29205	37.914	37.837	38.129	0					14	9	2	0	0	0	0.3576	1	6718	6718		8.5933	0	1	15959	+		21891	13253	14414	14563	29800	29800					-0.046036997244755185
VEKSMELIYN	10	Unmodified	_VEKSMELIYN_					0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5644226074219	3	409.209285	1224.60602	0.65889	0.00026963	-1.5926	-0.00065172	-0.93375	-0.0003821	409.2085512268373	70.975	0.64861	70.975	70.737	71.386	0					51	22	3	0	0	0	0.31557	1	16728	16728		14.218	1.3622	1	424320	+		21892	13056	14415	14564	29801	29801					0.002706003603861973
VEKSMELIYN	10	Unmodified	_VEKSMELIYN_					0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	409.209285	1224.60602	0.40192	0.00016447	-1.214	-0.00049676	-0.81204	-0.00033229	409.5431942732556	70.867	0.77466	70.926	70.689	71.464	0.058578	-0.024598	0.00031158	NaN	14.218	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429320	+		21893	13056	14415	14564							0.002706003603861973
VELEETPFRRF	11	Unmodified	_VELEETPFRRF_					0	0	0		ENST00000483107.5_1_22:21329983-21333988:+|nuORF;nc|ENSG00000183773|Q96NN9-3|AIFM3;nc|ENSG00000183773|Q96NN9-2|AIFM3;ENSG00000183773|ENST00000440238|AIFM3	ENST00000483107.5_1_22:21329983-21333988:+|nuORF	ENST00000483107.5_1_22:21329983-21333988:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2558288574219	3	474.917381	1421.73031	0.050077	2.3783E-05	-0.16473	-7.8232E-05	-0.11465	-5.4449E-05	474.9172611465428	37.84	0.65561	37.84	37.646	38.302	0					46	22	3	0	0	0	0.31101	1	6744	6744		0.45452	0	1	69299			21894	4938	14416	14565	29802	29802					0.03631814172013037
VELEETPFRRF	11	Unmodified	_VELEETPFRRF_					0	0	0		ENST00000483107.5_1_22:21329983-21333988:+|nuORF;nc|ENSG00000183773|Q96NN9-3|AIFM3;nc|ENSG00000183773|Q96NN9-2|AIFM3;ENSG00000183773|ENST00000440238|AIFM3	ENST00000483107.5_1_22:21329983-21333988:+|nuORF	ENST00000483107.5_1_22:21329983-21333988:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	474.917381	1421.73031	0.029023	1.3783E-05	-0.34253	-0.00016267	-0.31351	-0.00014889	474.917230881376	37.686	0.4463	37.771	37.598	38.044	0.084476	-0.034573	-0.00014448	NaN	0.45452	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90235			21895	4938	14416	14565							0.03631814172013037
VELIIFLNCF	10	Unmodified	_VELIIFLNCF_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8453369140625	2	605.83066	1209.64677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.17	1	62.17	61.67	62.67	0								0	0	0	0.18096	1	14021	14021		32.305	1.6689	1				21896	1701	14417	14566	29803	29803					0.050329864706100125
VELKILFRAL	10	Unmodified	_VELKILFRAL_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3883666992188	2	601.386991	1200.75943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.7	1	104.7	104.2	105.2	0								0	0	0	0.33892	1	26949	26949		1.4819	0	1		+		21897	8925	14418	14567	29804	29804					0.16708003258986537
VELKILFRAL	10	Unmodified	_VELKILFRAL_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3200073242188	2	601.386991	1200.75943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.08	1	106.08	105.58	106.58	0								0	0	0	0.33892	1	27343	27343		1.4819	0	1		+		21898	8925	14418	14567	29805	29805					0.16708003258986537
VELKILFRAL	10	Unmodified	_VELKILFRAL_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.387939453125	2	601.386991	1200.75943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.27	1	106.27	105.77	106.77	0								0	0	0	0.33892	1	27398	27398		1.4819	0	1		+		21899	8925	14418	14567	29806	29806					0.16708003258986537
VELSDPACRF	10	Unmodified	_VELSDPACRF_					0	0	0			REV__nc|ENSG00000165731|P07949-2|RET	REV__nc|ENSG00000165731|P07949-2|RET	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2930908203125	2	568.773874	1135.53319	0.3145	0.00017888	-0.44231	-0.00025158	-0.12781	-7.2695E-05	569.2750590673187	62.389	0.2963	62.462	62.363	62.659	0.072701					13	9	2	0	0	0	0.31565	1	14004	14004		12.241	1.4167	1	92957	+		21900	10045	14419	14568	29807	29807					-0.029151086424235473
VELVDGGHF	9	Unmodified	_VELVDGGHF_					0	0	0			REV__LRAT|p.R47G|1|0.14|ENSG00000121207|chr4:154744465-154744465|C/G|missense_variant	REV__LRAT|p.R47G|1|0.14|ENSG00000121207|chr4:154744465-154744465|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.743896484375	2	486.742899	971.471246	0.14375	6.9971E-05	1.8886	0.00091927	2.0324	0.00098924	486.74386284658135	104.91	0.32186	104.95	104.8	105.12	0.034004					40	35	2	0	0	0	0.22344	1	26831	26831		15.847	3.3156	1	80971	+		21901	12723	14420	14569	29808	29808					-0.01563091999230437
VELWDDMFE	9	Unmodified	_VELWDDMFE_					0	0	0		nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.82177734375	2	592.25244	1182.49033	0.481	0.00028487	0.95315	0.00056451	1.4341	0.00084938	592.2528234086616	91.721	0.30861	91.721	91.531	91.84	0					15	11	2	0	0	0	0.25051	1	23035	23035		7.9102	0	1	111220			21902	5570	14421	14570	29809	29809					-0.09361923490496338
VELYYRAI	8	Unmodified	_VELYYRAI_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.305908203125	2	513.784567	1025.55458	0.22376	0.00011496	-0.12272	-6.3053E-05	0.10103	5.191E-05	513.7845381269035	69.168	0.33028	69.23	69.168	69.498	0.062126					20	12	2	0	0	0	0.3576	1	16050	16050		7.2892	0	1	224970			21903	200;3052	14422	14571	29810	29810					0.04282644448608153
VEMLELVF	8	Unmodified	_VEMLELVF_					0	0	0		ENST00000530567.1_1_11:64976762-64977505:+|nuORF	ENST00000530567.1_1_11:64976762-64977505:+|nuORF	ENST00000530567.1_1_11:64976762-64977505:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.26239013671875	2	490.262079	978.509605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.72	1	86.72	86.22	87.22	0								0	0	0	0.38822	1	21509	21509		9.3474	0	1				21904	7023	14423	14572	29811	29811					0.019490775910753655
VENAVHPVL	9	Unmodified	_VENAVHPVL_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2742004394531	2	489.274367	976.53418	0.37746	0.00018468	-2.1332	-0.0010437	-1.7557	-0.00085903	489.27420541190577	53.82	0.56094	53.82	53.603	54.164	0					35	19	3	0	0	0	0.2125	1	11475	11475		17.113	0	1	125000	+		21905	11086	14424	14573	29812	29812					0.04497473788796924
VENAVHPVL	9	Unmodified	_VENAVHPVL_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	489.274367	976.53418	0.37746	0.00018468	-2.1332	-0.0010437	-1.7557	-0.00085903	489.27420541190577	53.82	0.56094	53.82	53.603	54.164	0	-0.036582	-0.0022836	NaN	17.113	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125000	+		21906	11086	14424	14573							0.04497473788796924
VENAVHPVL	9	Unmodified	_VENAVHPVL_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	489.274367	976.53418	0.36882	0.00018046	0.39935	0.00019539	0.76818	0.00037585	489.2743691151134	53.828	0.46088	53.893	53.656	54.117	0.06543	0.036582	0.0001946	NaN	17.113	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112940	+		21907	11086	14424	14573							0.04497473788796924
VENCHETLI	9	Unmodified	_VENCHETLI_					0	0	0			REV__nc|ENSG00000162923|Q9H7D7-2|WDR26	REV__nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.257080078125	2	529.252774	1056.491	0.33495	0.00017728	-4.3497	-0.0023021	-4.0147	-0.0021248	529.7528632985078	62.078	0.30488	62.078	61.898	62.203	0					15	12	2	0	0	0	0.20358	1	13966	13966		18.146	0.011366	1	78376	+		21908	9915	14425	14574	29813	29813					-0.034990840507816756
VENWEEDDGR	10	Unmodified	_VENWEEDDGR_					0	0	0			REV__nc|ENSG00000135372|Q9H0A0-2|NAT10	REV__nc|ENSG00000135372|Q9H0A0-2|NAT10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.8423156738281	3	416.84243	1247.50546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.75	1	25.75	25.25	26.25	0								0	0	0	0.34018	1	3063	3063		0	0	1		+		21909	9202	14426	14575	29814	29814					-0.10839340368966077
VEPDRYVL	8	Unmodified	_VEPDRYVL_					0	0	0		nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1;nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1	nc|ENSG00000168060|Q9UQQ1-5|NAALADL1	nc|ENSG00000168060|Q9UQQ1-5|NAALADL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.28472900390625	2	495.766374	989.518196	-0.0014739	-7.3071E-07	-0.12371	-6.1333E-05	-0.12519	-6.2064E-05	495.76628365179835	45.725	0.25388	45.725	45.586	45.84	0					12	8	2	0	0	0	0.3576	1	8987	8987		2.5775	0	1	24331			21910	4259	14427	14576	29815	29815					0.023017675519099612
VEPFIRQLRLT	11	Unmodified	_VEPFIRQLRLT_					0	0	0			REV__nc|ENSG00000177302|Q13472-3|TOP3A	REV__nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.608154296875	3	457.94175	1370.80342	0.5916	0.00027092	1.6431	0.00075246	2.2347	0.0010234	457.9424857320368	93.948	0.70028	93.948	93.323	94.023	0					49	32	2	0	0	0	0.31091	1	23643	23643		2.4348	1.1051	1	629590	+		21911	10426	14428	14577	29816	29816					0.1328498768530153
VEPLSDLQI	9	Unmodified	_VEPLSDLQI_					0	0	0			REV__nc|ENSG00000176390|Q8IUI8-2|CRLF3	REV__nc|ENSG00000176390|Q8IUI8-2|CRLF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.27923583984375	2	507.279315	1012.54408	0.48771	0.00024741	-0.32206	-0.00016338	0.16565	8.4031E-05	507.2790708584896	70.315	1.6323	70.376	69.996	71.628	0.060562					152	64	3	0	0	0	0.16392	1	16614	16614		22.736	0	1	1077900	+		21912	10401	14429	14578	29817	29817					0.03830617003529824
VEPSLLEIL	9	Unmodified	_VEPSLLEIL_					0	0	0		ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.79986572265625	2	506.799883	1011.58521	0.31263	0.00015844	0.047678	2.4163E-05	0.36031	0.0001826	506.79970062060687	100.79	0.50919	100.79	100.61	101.12	0					40	30	2	0	0	0	0.14091	2	25785	25785;25825		25.399	0	1	181690			21913	1998	14430	14579	29818;29819	29818					0.07988378043000921
VEPSLLEIL	9	Unmodified	_VEPSLLEIL_					0	0	0		ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8002624511719	2	506.799883	1011.58521	0.41871	0.0002122	-0.06146	-3.1148E-05	0.35725	0.00018105	506.79974069696834	100.79	0.37718	100.83	100.68	101.05	0.042831					39	22	2	0	0	0	0.23216	1	25612	25612		14.838	0	1	120440			21914	1998	14430	14579	29820	29820					0.07988378043000921
VEPVLEAASS	10	Unmodified	_VEPVLEAASS_					0	0	0		BOD1L1|p.T976A|1|0.08|ENSG00000038219|chr4:13603974-13603974|T/C|missense_variant	BOD1L1|p.T976A|1|0.08|ENSG00000038219|chr4:13603974-13603974|T/C|missense_variant	BOD1L1|p.T976A|1|0.08|ENSG00000038219|chr4:13603974-13603974|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7275085449219	2	501.261122	1000.50769	0.32516	0.00016299	-2.5769	-0.0012917	-2.2517	-0.0011287	501.2597544287534	76.907	0.2186	76.907	76.756	76.975	0					12	7	2	0	0	0	0.31838	1	18482	18482		1.4819	0	1	64853			21915	90	14431	14580	29821	29821					0.00745740106822268
VEQIWRDIED	10	Unmodified	_VEQIWRDIED_					0	0	0		ENSG00000170703|ENST00000393382|TTLL6;nc|ENSG00000170703|Q8N841-2|TTLL6;ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-3|TTLL6	ENSG00000170703|ENST00000393382|TTLL6	ENSG00000170703|ENST00000393382|TTLL6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8821105957031	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.312	1	42.401	41.901	42.901	0.089764								0	0	0	0.34005	1	7863	7863		0.15932	0	1				21916	4406	14432	14581	29822	29822					-0.01356727024403881
VEQNTLQEF	9	Unmodified	_VEQNTLQEF_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3;ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.5867919921875	2	554.269478	1106.5244	0.76852	0.00042597	0.14947	8.2848E-05	0.91799	0.00050882	554.268959710331	54.306	0.30356	54.306	54.164	54.467	0					17	11	2	0	0	0	0.23347	1	11610	11610		13.615	2.8154	1	100420			21917	3116	14433	14582	29823	29823					-0.024597590072289677
VEQQRQFLP	9	Unmodified	_VEQQRQFLP_					0	0	0			REV__ENSG00000186453|ENST00000295150|FAM228A	REV__ENSG00000186453|ENST00000295150|FAM228A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8091430664062	2	572.809105	1143.60366	-0.23444	-0.00013429	0.013353	7.6486E-06	-0.22108	-0.00012664	572.8091484674741	45.153	0.45142	45.153	44.994	45.446	0					28	15	3	0	0	0	0.32112	1	8886	8886		3.9444	0	1	64190	+		21918	10706	14434	14583	29824	29824					0.03759932737557392
VEQQRQFLP	9	Unmodified	_VEQQRQFLP_					0	0	0			REV__ENSG00000186453|ENST00000295150|FAM228A	REV__ENSG00000186453|ENST00000295150|FAM228A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	572.809105	1143.60366	-0.23444	-0.00013429	0.013353	7.6486E-06	-0.22108	-0.00012664	572.8091484674741	45.153	0.45142	45.153	44.994	45.446	0	0.015426	3.374E-05	NaN	3.9444	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64190	+		21919	10706	14434	14583							0.03759932737557392
VEQQRQFLP	9	Unmodified	_VEQQRQFLP_					0	0	0			REV__ENSG00000186453|ENST00000295150|FAM228A	REV__ENSG00000186453|ENST00000295150|FAM228A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.809105	1143.60366	0.025907	1.484E-05	-0.070038	-4.0118E-05	-0.044131	-2.5278E-05	572.8089869503764	45.035	0.43312	45.122	44.964	45.397	0.087543	-0.015426	-6.1793E-05	NaN	3.9444	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58269	+		21920	10706	14434	14583							0.03759932737557392
VEQSFFNDW	9	Unmodified	_VEQSFFNDW_					0	0	0		ENST00000522359.2_1_11:61630757-61632750:+|nuORF;nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2	ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENST00000522359.2_1_11:61630757-61632750:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134765625	2	586.256371	1170.49819	0.48679	0.00028538	-0.32289	-0.00018929	0.1639	9.6088E-05	586.2560969593782	78.526	0.31982	78.526	78.361	78.681	0					19	10	2	0	0	0	0.23908	1	19022	19022		16.149	6.0752	1	167320			21921	2691	14435	14584	29825	29825					-0.08024028178715525
VEQSFFNDW	9	Unmodified	_VEQSFFNDW_					0	0	0		ENST00000522359.2_1_11:61630757-61632750:+|nuORF;nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2	ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENST00000522359.2_1_11:61630757-61632750:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134765625	2	586.256371	1170.49819	0.77503	0.00045437	-0.57034	-0.00033437	0.20469	0.00012	586.2559613588004	78.486	0.42622	78.517	78.286	78.712	0.030159					29	14	3	0	0	0	0.21549	1	18863	18863		23.801	11.27	1	147700			21922	2691	14435	14584	29826	29826					-0.08024028178715525
VEQTGLEPL	9	Unmodified	_VEQTGLEPL_					0	0	0			REV__ENST00000599799.1_1_19:35820106-35820811:+|nuORF	REV__ENST00000599799.1_1_19:35820106-35820811:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.26361083984375	2	493.263665	984.512776	0.51255	0.00025282	-0.50112	-0.00024719	0.011423	5.6344E-06	493.2633155083214	47.359	0.56271	47.359	47.144	47.707	0					44	18	3	0	0	0	0.18398	1	9559	9559		20.415	0	1	398480	+		21923	12619	14436	14585	29827	29827					0.01990043969431099
VEQYKKKF	8	Unmodified	_VEQYKKKF_					0	0	0		ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	ENSG00000108094|ENST00000374749|CUL2	ENSG00000108094|ENST00000374749|CUL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7407836914062	2	535.305667	1068.59678	0.45055	0.00024118	0.36201	0.00019379	0.81256	0.00043497	535.3057643006631	58.374	0.59404	58.444	58.184	58.778	0.070477					38	20	3	0	0	0	0.3576	1	12660	12660		5.7604	0.52976	1	202730			21924	1581	14437	14586	29828	29828					0.06522619856991696
VEQYKKKF	8	Unmodified	_VEQYKKKF_					0	0	0		ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	ENSG00000108094|ENST00000374749|CUL2	ENSG00000108094|ENST00000374749|CUL2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	535.305667	1068.59678	0.037624	2.014E-05	0.60555	0.00032416	0.64318	0.0003443	535.3059100555554	58.507	0.52643	58.507	58.263	58.79	0	0.031294	0.0001108	NaN	5.7604	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217070			21925	1581	14437	14586							0.06522619856991696
VERFKPYCNF	10	Unmodified	_VERFKPYCNF_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8819580078125	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.976	1	45.064	44.564	45.564	0.08754								0	0	0	0.33952	1	8667	8667		0.77653	0	1				21926	2364	14438	14587	29829	29829					-0.016068539630396117
VERNLIKNNL	10	Unmodified	_VERNLIKNNL_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.9065856933594	3	404.906816	1211.69862	-0.13641	-5.5235E-05	-0.41068	-0.00016629	-0.54709	-0.00022152	404.9066737779006	40.771	0.33976	40.771	40.656	40.996	0					20	11	2	0	0	0	0.45632	1	7541	7541		3.5871	0.26742	1	38484	+		21927	10466	14439	14588	29830	29830					0.10123866208755317
VERRRLERRT	10	Unmodified	_VERRRLERRT_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.60772705078125	3	457.607764	1369.80146	0.55422	0.00025361	0.5503	0.00025182	1.1045	0.00050543	457.6079405089074	91.662	0.66902	91.662	91.319	91.988	0					41	24	2	0	0	0	0.46521	1	23002	23002		1.9064	0.57673	1	121940			21928	2612	14440	14589	29831	29831					0.13135371720068179
VERRRLERRT	10	Unmodified	_VERRRLERRT_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.60833740234375	3	457.607764	1369.80146	0.19139	8.7582E-05	1.1206	0.00051278	1.312	0.00060037	457.6081652838569	91.707	0.57764	91.743	91.361	91.939	0.035919					37	20	2	0	0	0	0.47161	1	22836	22836		0.69767	0	1	108030			21929	2612	14440	14589	29832	29832					0.13135371720068179
VERRRLERRT	10	Unmodified	_VERRRLERRT_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.60821533203125	3	457.607764	1369.80146	0.41154	0.00018832	0.65291	0.00029877	1.0644	0.0004871	457.6079924139184	92.397	1.3582	92.434	91.911	93.27	0.03653					113	51	3	0	0	0	0.46688	1	23069	23069		1.5923	0.48253	1	222900			21930	2612	14440	14589	29833	29833					0.13135371720068179
VERRRLERRT	10	Unmodified	_VERRRLERRT_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	457.607764	1369.80146	0.55422	0.00025361	0.5503	0.00025182	1.1045	0.00050543	457.6079405089074	91.662	0.66902	91.662	91.319	91.988	0	-0.040557	-0.00049051	NaN	1.9064	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121940			21931	2612	14440	14589							0.13135371720068179
VERTQIDELT	10	Unmodified	_VERTQIDELT_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778381347656	3	401.878704	1202.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.083	1	27.17	26.67	27.67	0.0867								0	0	0	0.33892	1	3317	3317		0.62683	0	1		+		21932	9947	14441	14590	29834	29834					0.021078706013213377
VESLMINDSF	10	Unmodified	_VESLMINDSF_					0	0	0		ENST00000494539.5_1_2:55402928-55459402:-|nuORF;nc|ENSG00000162994|Q8NHS4-2|CLHC1;ENSG00000162994|ENST00000401408|CLHC1	ENST00000494539.5_1_2:55402928-55459402:-|nuORF	ENST00000494539.5_1_2:55402928-55459402:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2880249023438	2	577.773539	1153.53253	0.40118	0.00023179	0.47456	0.00027419	0.87574	0.00050598	577.7740626485098	82.099	2.322	82.121	81.846	84.168	0.021866					266	82	5	0	0	0	0.33099	1	20488	20488		19.257	4.4187	1	10383000			21933	3869	14442	14591	29835	29835					-0.03809948082130177
VESNGRIPT	9	Unmodified	_VESNGRIPT_					0	0	0			REV__nc|ENSG00000108387|O43236-8|SEPTIN4	REV__nc|ENSG00000108387|O43236-8|SEPTIN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7586975097656	2	486.759081	971.503609	-0.066158	-3.2203E-05	-0.4417	-0.000215	-0.50786	-0.0002472	486.7588980642927	35.221	0.3044	35.3	35.102	35.407	0.078827					16	12	2	0	0	0	0.32375	1	5752	5752		3.5965	0	1	20872	+		21934	8615	14443	14592	29836	29836					0.01671695403740614
VESNGRIPT	9	Unmodified	_VESNGRIPT_					0	0	0			REV__nc|ENSG00000108387|O43236-8|SEPTIN4	REV__nc|ENSG00000108387|O43236-8|SEPTIN4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.77740478515625	2	486.759081	971.503609	-0.066158	-3.2203E-05	-0.4417	-0.000215	-0.50786	-0.0002472	486.7588980642927	35.221	0.3044	35.3	35.102	35.407	0.078827					16	12	2	0	0	0	0.25699	1	5704	5704		3.5965	0	1	20872	+		21935	8615	14443	14592	29837	29837					0.01671695403740614
VESPQAVEVP	10	Unmodified	_VESPQAVEVP_					0	0	0			REV__nc|ENSG00000120690|P32519-2|ELF1	REV__nc|ENSG00000120690|P32519-2|ELF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7740478515625	2	527.774396	1053.53424	-0.11437	-6.036E-05	0.063433	3.3478E-05	-0.050934	-2.6882E-05	527.7743343245853	31.241	0.52238	31.314	31.091	31.613	0.073782					44	26	2	0	0	0	0.46746	1	4529	4529		1.4819	0	1	39708	+		21936	8881	14444	14593	29838	29838					0.00961428998152769
VESSDQTNV	9	Unmodified	_VESSDQTNV_					0	0	0		nc|ENSG00000141052|Q8IZQ8-2|MYOCD;MYOCD|p.L825Afs*4|1|0.18|ENSG00000141052|chr17:12763300-12763322|CTTCTAAAAATTGGGAGCGAAGA/-|frameshift_variant;MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant;nc|ENSG00000141052|Q8IZQ8|MYOCD;ENSG00000141052|ENST00000425538|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.27447509765625	2	489.722361	977.430169	0.23526	0.00011521	3.8022	0.001862	4.0375	0.0019773	489.7244230570577	52.623	0.17407	52.691	52.578	52.752	0.067173					7	5	2	0	0	0	0.25376	1	10968	10968		3.2813	0	1	32588			21937	3042	14445	14594	29839	29839					-0.059448978293630717
VESVLSPGGI	10	Unmodified	_VESVLSPGGI_					0	0	0		ENST00000265071.2_1_5:31267741-31294088:+|nuORF	ENST00000265071.2_1_5:31267741-31294088:+|nuORF	ENST00000265071.2_1_5:31267741-31294088:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.7131652832031	2	479.266207	956.517862	-0.077857	-3.7314E-05	0.21504	0.00010306	0.13718	6.5746E-05	479.2662070119768	36.35	0.33722	36.35	36.155	36.492	0					23	12	2	0	0	0	0.31857	1	6168	6168		0	0	1	40244			21938	5895	14446	14595	29840	29840					0.03786347832078718
VETDHTPIL	9	Unmodified	_VETDHTPIL_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2704467773438	2	512.769114	1023.52368	0.19126	9.8074E-05	-0.58695	-0.00030097	-0.39568	-0.00020289	512.7687421597426	46.508	1.1028	46.592	46.303	47.405	0.083847					98	54	2	0	0	0	0.29105	1	9242	9242		7.9102	0	1	1115200	+		21939	10102	14447	14596	29841	29841					0.01285446343717922
VETFDIEWRGG	11	Unmodified	_VETFDIEWRGG_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|96|2|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|96|2|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.55303955078125	3	436.878815	1307.61462	-0.26825	-0.00011719	3.229	0.0014107	2.9607	0.0012935	436.8794404731614	42.298	0.88932	42.298	42.084	42.974	0					41	30	2	0	0	0	0.31101	1	7973	7973		0.45452	0.1855	1	58974	+		21940	12678	14448	14597	29842	29842					-0.026887096788414055
VETGVNFHYV	10	Unmodified	_VETGVNFHYV_					0	0	0			REV__ENSG00000183690|ENST00000420999|EFHC2	REV__ENSG00000183690|ENST00000420999|EFHC2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.785400390625	2	582.787838	1163.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.332	1	27.332	26.832	27.832	0								0	0	0	0.33877	1	3516	3516		1.6526	0.32309	1		+		21941	10606	14449	14598	29843	29843					-0.014114623906834822
VETILISFE	9	Unmodified	_VETILISFE_					0	0	0			REV__ENSG00000142549|ENST00000270642|IGLON5	REV__ENSG00000142549|ENST00000270642|IGLON5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.78955078125	2	525.789515	1049.56448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.448	1	97.448	96.948	97.948	0								0	0	0	0.15116	1	24771	24771		25.399	0	1		+		21942	9434	14450	14599	29844	29844					0.041677876633457345
VETKNCITF	9	Unmodified	_VETKNCITF_					0	0	0			REV__CPNE5|p.H216N|1|0.26|ENSG00000124772|chr6:36775052-36775052|G/T|missense_variant	REV__CPNE5|p.H216N|1|0.26|ENSG00000124772|chr6:36775052-36775052|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7752685546875	2	527.765517	1053.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.629	1	54.629	54.129	55.129	0								0	0	0	0.20792	1	11724	11724		16.942	1.0951	1		+		21943	7856	14451	14600	29845	29845					-0.008136095283816758
VETPCPLPQ	9	Unmodified	_VETPCPLPQ_					0	0	0			REV__ENST00000328933.9_1_22:39777925-39778135:+|nuORF	REV__ENST00000328933.9_1_22:39777925-39778135:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.24725341796875	2	492.24696	982.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.419	1	63.49	62.99	63.99	0.071018								0	0	0	0.2428	1	14260	14260		10.824	0	1		+		21944	11419	14452	14601	29846	29846					-0.012572810741289686
VEVFLPTLF	9	Unmodified	_VEVFLPTLF_					0	0	0		ENST00000539434.1_1_12:67663527-67686741:+|nuORF	ENST00000539434.1_1_12:67663527-67686741:+|nuORF	ENST00000539434.1_1_12:67663527-67686741:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.8055419921875	2	532.804968	1063.59538	0.53719	0.00028622	0.18612	9.9166E-05	0.72331	0.00038538	532.804998141646	99.319	0.6172	99.319	98.987	99.604	0					116	39	4	0	0	0	0.29576	1	25416	25416		7.2892	1.0834	1	1731800			21945	7055	14453	14602	29847	29847					0.06612985768219914
VEVIAKEGQNL	11	Unmodified	_VEVIAKEGQNL_					0	0	0		nc|ENSG00000145743|Q9UF56-3|FBXL17;nc|ENSG00000145743|Q9UF56-2|FBXL17;ENSG00000145743|ENST00000542267|FBXL17	nc|ENSG00000145743|Q9UF56-3|FBXL17	nc|ENSG00000145743|Q9UF56-3|FBXL17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.7974853515625	2	600.335153	1198.65575	0.73339	0.00044028	2.6153	0.00157	3.3486	0.0020103	600.8383084366518	65.697	0.24184	65.697	65.549	65.791	0					13	8	2	0	0	0	0.31088	1	15068	15068		2.2828	0.80087	1	56237			21946	3262	14454	14603	29848	29848					0.06437051360694568
VEVPRMMK	8	Unmodified	_VEVPRMMK_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.26678466796875	2	495.267173	988.519793	0.16086	7.967E-05	-0.71906	-0.00035613	-0.5582	-0.00027646	495.26673192624594	22.22	0.2728	22.322	22.223	22.496	0.10178					26	21	2	0	0	0	0.54097	1	1971	1971		0.69038	0	1	18611	+		21947	9830	14455	14604	29849	29849					0.025073620446619316
VEVPRMMK	8	Unmodified	_VEVPRMMK_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	495.267173	988.519793	-0.11174	-5.5341E-05	-1.064	-0.00052695	-1.1757	-0.00058229	495.266594243363	22.409	0.26581	22.409	22.313	22.579	0	0.043731	-0.00015805	NaN	0.69038	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25679	+		21948	9830	14455	14604							0.025073620446619316
VEVPRMMK	8	Unmodified	_VEVPRMMK_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.267173	988.519793	0.16086	7.967E-05	-0.71906	-0.00035613	-0.5582	-0.00027646	495.26673192624594	22.22	0.2728	22.322	22.223	22.496	0.10178	-0.043731	0.00018359	NaN	0.69038	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18611	+		21949	9830	14455	14604							0.025073620446619316
VEVTWPDGK	9	Unmodified	_VEVTWPDGK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.798095703125	2	515.763832	1029.51311	-0.0305	-1.5731E-05	-2.2406	-0.0011556	-2.2711	-0.0011714	515.7620062464179	31.37	0.29395	31.443	31.284	31.578	0.07378					17	13	2	0	0	0	0.25281	1	4590	4590		6.7232	1.4925	1	12002			21950	1103	14456	14605	29850	29850					-0.00046536310719602625
VEWEPTPKQ	9	Unmodified	_VEWEPTPKQ_					0	0	0			REV__nc|ENSG00000277399|Q6PRD1|GPR179	REV__nc|ENSG00000277399|Q6PRD1|GPR179	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3006591796875	2	557.282389	1112.55022	-0.16524	-9.2085E-05	-0.40027	-0.00022307	-0.56551	-0.00031515	557.2820581791337	41.56	0.95881	41.65	41.332	42.291	0.089767					81	38	3	0	0	0	0.3182	1	7594	7594		4.3292	4.3292	1	205800	+		21951	11140	14457	14606	29851	29851					-0.0015486476497699186
VEYIGADKKSF	11	Unmodified	_VEYIGADKKSF_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.5556640625	3	419.555561	1255.64485	0.0091567	3.8417E-06	0.22211	9.3188E-05	0.23127	9.7029E-05	419.5556965432477	45.308	1.9844	45.308	44.531	46.516	0					217	70	4	0	0	0	0.38555	1	9232	9232		3.8459	0	1	791440	+		21952	8434	14458	14607	29852	29852					0.027256489863702882
VEYIRLQYE	9	Unmodified	_VEYIRLQYE_					0	0	0			REV__TTC30A|p.N266I|1|0.35|ENSG00000197557|chr2:177617905-177617905|T/A|missense_variant	REV__TTC30A|p.N266I|1|0.35|ENSG00000197557|chr2:177617905-177617905|T/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.908203125	3	404.880156	1211.61864	-0.47627	-0.00019283	-0.76209	-0.00030856	-1.2384	-0.00050139	404.88022498425	41.089	0.28447	41.179	41.011	41.295	0.089645					15	10	2	0	0	0	0.25594	1	7500	7500		4.897	0	1	31877	+		21953	13325	14459	14608	29853	29853					0.02129379814891763
VFAEQGQSLE	10	Unmodified	_VFAEQGQSLE_					0	0	0			REV__ENST00000512987.1_1_22:23735173-23735854:+|nuORF	REV__ENST00000512987.1_1_22:23735173-23735854:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2568359375	2	554.269478	1106.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.813	1	31.813	31.313	32.313	0								0	0	0	0.32971	1	4835	4835		12.241	2.8575	1		+		21954	12262	14460	14609	29854	29854					-0.024597590072062303
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant;ENSG00000124491|ENST00000264870|F13A1	F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant	F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2584228515625	2	501.258185	1000.50182	0.40634	0.00020368	0.1669	8.3662E-05	0.57324	0.00028734	501.2581972559218	82.931	0.58913	82.931	82.723	83.312	0					41	19	3	0	0	0	0.0097093	2	20353	20353;20400		68.081	41.739	1	279840			21955	2256	14461	14610	29855;29856	29855					0.0015868638580514016
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant;ENSG00000124491|ENST00000264870|F13A1	F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant	F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.25836181640625	2	501.258185	1000.50182	0.2973	0.00014902	0.27236	0.00013652	0.56965	0.00028554	501.25828775929585	82.915	0.70513	82.937	82.735	83.44	0.021744					49	24	3	0	0	0	0.024893	4	20186	20144;20186;20238;20250		54.774	29.374	1	349810			21956	2256	14461	14610	29857;29858;29859;29860	29858					0.0015868638580514016
VFAKHFVNSLF	11	Unmodified	_VFAKHFVNSLF_					0	0	0			REV__ENSG00000242550|ENST00000238508|SERPINB10	REV__ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.9079895019531	3	436.908157	1307.70264	0.5781	0.00025258	-0.63964	-0.00027947	-0.06154	-2.6888E-05	436.9078150873712	68.473	0.80902	68.473	68.267	69.076	0					64	29	3	0	0	0	0.40087	1	15978	15978		4.1166	0.52957	1	285830	+		21957	11064	14462	14611	29861	29861					0.06109955702459047
VFAPSPPPFF	10	Unmodified	_VFAPSPPPFF_					0	0	0		ENST00000234310.7_1_2:68479486-68479594:-|nuORF	ENST00000234310.7_1_2:68479486-68479594:-|nuORF	ENST00000234310.7_1_2:68479486-68479594:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8301391601562	2	553.289485	1104.56442	0.54545	0.00030179	-0.45612	-0.00025237	0.089331	4.9426E-05	553.7908120243958	86.271	0.39857	86.296	86.138	86.537	0.025169					15	14	2	0	0	0	0.31288	1	21200	21200		15.847	7.937	1	58488			21958	5819	14463	14612	29862	29862					0.0163183245399523
VFAQIFPQW	9	Unmodified	_VFAQIFPQW_					0	0	0		nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7286376953125	2	568.300384	1134.58622	0.0031258	1.7764E-06	-0.43767	-0.00024873	-0.43455	-0.00024695	568.2998828465435	90.168	0.63495	90.202	90.109	90.744	0.034065					38	26	2	0	0	0	0.24635	1	22422	22422		10.824	0.75	1	245150			21959	7510	14464	14613	29863	29863					0.02430637202564867
VFARMAPEQ	9	Unmodified	_VFARMAPEQ_					0	0	0		ENST00000466561.1_1_1:17313027-17318334:-|nuORF;nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2	ENST00000466561.1_1_1:17313027-17318334:-|nuORF	ENST00000466561.1_1_1:17313027-17318334:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8057861328125	2	524.765852	1047.51715	0.011205	5.8802E-06	1.1911	0.00062502	1.2023	0.0006309	524.7664162842104	91.024	0.20299	91.059	90.966	91.169	0.035446					10	6	2	0	0	0	0.2491	1	22684	22684		8.5933	1.304	1	65055			21960	3726	14465	14614	29864	29864					-0.004707700886456223
VFASILAAF	9	Unmodified	_VFASILAAF_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.770751953125	2	469.770929	937.527304	0.1689	7.9345E-05	-1.4748	-0.00069281	-1.3059	-0.00061346	469.7703195771149	93.819	0.36493	93.857	93.606	93.971	0.037926					22	15	2	0	0	0	0.0099477	1	23489	23489		67.344	6.9543	1	239540			21961	332	14466	14615	29865	29865					0.05604160908239919
VFASILAAF	9	Unmodified	_VFASILAAF_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	469.770929	937.527304	0.34728	0.00016314	-1.6632	-0.00078131	-1.3159	-0.00061817	469.77037403998213	93.832	0.42383	93.832	93.573	93.997	0	-0.012261	-0.00012701	NaN	67.344	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192030			21962	332	14466	14615							0.05604160908239919
VFASLPGFLF	10	Unmodified	_VFASLPGFLF_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.3049926757812	2	549.305136	1096.59572	0.32908	0.00018077	-0.12187	-6.6943E-05	0.20721	0.00011382	549.304987772051	102.58	0.5126	102.58	102.36	102.88	0					44	35	2	0	0	0	0.40987	1	26354	26354		10.824	2.2306	1	80493			21963	4945	14467	14616	29866	29866					0.051284054880852636
VFASLPGFLF	10	Unmodified	_VFASLPGFLF_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3053588867188	2	549.305136	1096.59572	0.50855	0.00027935	-0.40991	-0.00022517	0.098644	5.4186E-05	549.3047822617511	102.51	0.47269	102.55	102.35	102.82	0.040909					45	34	2	0	0	0	0.40987	1	26170	26170		10.824	6.0679	1	61741			21964	4945	14467	14616	29867	29867					0.051284054880852636
VFASLPGFLF	10	Unmodified	_VFASLPGFLF_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.305136	1096.59572	0.50855	0.00027935	-0.40991	-0.00022517	0.098644	5.4186E-05	549.3047822617511	102.51	0.47269	102.55	102.35	102.82	0.040909	-0.013256	-0.00010978	NaN	10.824	45	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61741			21965	4945	14467	14616							0.051284054880852636
VFAWKAYM	8	Unmodified	_VFAWKAYM_					0	0	0			REV__ENSG00000152086|ENST00000312988|TUBA3E	REV__ENSG00000152086|ENST00000312988|TUBA3E	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.28509521484375	2	508.257131	1014.49971	0.13558	6.8908E-05	0.19638	9.9813E-05	0.33196	0.00016872	508.2570724638376	71.756	0.16183	71.812	71.705	71.867	0.055931					8	5	2	0	0	0	0.35759	1	16775	16775		13.508	0	1	47754	+		21966	9664	14468	14617	29868	29868					-0.006960656236628893
VFCHSLVYF	9	Unmodified	_VFCHSLVYF_					0	0	0		ENST00000341166.3_1_8:99205208-99215350:-|nuORF	ENST00000341166.3_1_8:99205208-99215350:-|nuORF	ENST00000341166.3_1_8:99205208-99215350:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7745971679688	2	557.773145	1113.53174	0.60134	0.00033541	1.7246	0.00096193	2.3259	0.0012973	557.7736122812757	53.273	0.41619	53.338	53.084	53.5	0.065426					42	20	3	0	0	0	0.24365	1	11196	11196		13.508	0	1	116950			21967	6086	14469	14618	29869	29869					-0.020486979405177408
VFDEAIRAV	9	Unmodified	_VFDEAIRAV_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2797546386719	2	510.279649	1018.54475	0.27469	0.00014017	0.042734	2.1806E-05	0.31742	0.00016197	510.2795669573909	53.381	0.67683	53.381	53.164	53.841	0					69	27	5	0	0	0	0.0047429	3	11321	11321;11362;11411		83.429	31.16	1	402950			21968	2779;267	14470	14619	29870;29871;29872	29870					0.03621456443227089
VFDEAIRAV	9	Unmodified	_VFDEAIRAV_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2799377441406	2	510.279649	1018.54475	0.39688	0.00020252	-0.032862	-1.6769E-05	0.36402	0.00018575	510.2795463542159	53.344	0.70592	53.409	53.188	53.894	0.06543					67	33	3	0	0	0	0.015341	3	11211	11169;11211;11254		61.602	25.475	1	366160			21969	2779;267	14470	14619	29873;29874;29875	29874					0.03621456443227089
VFDEAIRAVL	10	Unmodified	_VFDEAIRAVL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.8219604492188	2	566.821681	1131.62881	0.46256	0.00026219	-0.0037982	-2.1529E-06	0.45876	0.00026003	566.8215966632764	69.733	0.92208	69.733	69.496	70.418	0					80	33	4	0	0	0	0.015562	2	16315	16315;16366		71.708	50.118	1	1260600			21970	2779;267	14471	14620	29876;29877	29876					0.06825987540128153
VFDEAIRAVL	10	Unmodified	_VFDEAIRAVL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.8219604492188	2	566.821681	1131.62881	0.29311	0.00016614	0.16483	9.3428E-05	0.45794	0.00025957	566.8216984769589	69.648	0.83175	69.708	69.472	70.304	0.060768					80	33	4	0	0	0	0.029684	2	16133	16133;16184		63.227	44.854	1	1252300			21971	2779;267	14471	14620	29878;29879	29878					0.06825987540128153
VFDIHVIDF	9	Unmodified	_VFDIHVIDF_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7900390625	2	552.78985	1103.56515	0.62429	0.0003451	0.071601	3.958E-05	0.6959	0.00038468	552.7898931987688	79.449	1.2466	79.449	79.157	80.403	0					134	42	5	0	0	0	1.5498E-07	3	19267	19267;19312;19474		158.2	86.28	1	5743400			21972	2190	14472	14621	29880;29881;29882	29880					0.017506271030242715
VFDIHVIDF	9	Unmodified	_VFDIHVIDF_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7900390625	2	552.78985	1103.56515	0.42996	0.00023767	0.15455	8.5433E-05	0.5845	0.00032311	552.7899369147309	79.423	1.5163	79.449	79.195	80.711	0.026428					140	54	5	0	0	0	1.4799E-05	3	19105	19105;19153;19304		144.35	88.173	1	5007800			21973	2190	14472	14621	29883;29884;29885	29883					0.017506271030242715
VFDIHVIDF	9	Unmodified	_VFDIHVIDF_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.790283203125	2	552.78985	1103.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.64	1	80.664	80.164	81.164	0.023605								0	0	0	0.058966	1	19498	19498		46.021	22.873	1				21974	2190	14472	14621	29886	29886					0.017506271030242715
VFDKENSLS	9	Unmodified	_VFDKENSLS_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.2723388671875	2	519.758746	1037.50294	-0.13701	-7.1214E-05	1.596	0.00082954	1.459	0.00075832	519.7600799337964	28.975	0.25964	29.053	28.878	29.138	0.078289					44	19	4	0	0	0	0.25579	1	3869	3869		4.3292	0.38484	1	60805	+		21975	8137	14473	14622	29887	29887					-0.014311440359506378
VFDKTLAEL	9	Unmodified	_VFDKTLAEL_					0	0	0		ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	ENST00000539659.5_1_12:14576849-14613468:+|nuORF	ENST00000539659.5_1_12:14576849-14613468:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.2896728515625	2	518.289682	1034.56481	0.20041	0.00010387	-0.16203	-8.3977E-05	0.038382	1.9893E-05	518.2896923687881	58.327	0.76397	58.397	58.205	58.969	0.070477					72	26	3	0	0	0	0.0044228	1	12743	12743		93.938	39.165	1	855130			21976	4454	14474	14623	29888	29888					0.04891207383184337
VFDKTLAEL	9	Unmodified	_VFDKTLAEL_					0	0	0		ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	ENST00000539659.5_1_12:14576849-14613468:+|nuORF	ENST00000539659.5_1_12:14576849-14613468:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	518.289682	1034.56481	0.016568	8.5871E-06	0.18608	9.6444E-05	0.20265	0.00010503	518.2898158016484	58.473	0.6465	58.473	58.256	58.903	0	0.038169	0.0001278	NaN	93.938	67	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	703290			21977	4454	14474	14623							0.04891207383184337
VFDLAEPLF	9	Unmodified	_VFDLAEPLF_					0	0	0			REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7793579101562	2	525.778951	1049.54335	0.22462	0.0001181	0.060237	3.1671E-05	0.28485	0.00014977	525.7791027319466	86.111	0.62093	86.111	85.908	86.529	0					45	23	3	0	0	0	0.18364	1	21372	21372		20.454	4.6064	1	138370	+		21978	8341	14475	14624	29889	29889					0.020558223544639986
VFDLAEPLF	9	Unmodified	_VFDLAEPLF_					0	0	0			REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7792358398438	2	525.778951	1049.54335	0.31039	0.0001632	0.35126	0.00018469	0.66166	0.00034788	525.7789880097472	86.071	0.5325	86.096	85.899	86.431	0.025169					35	18	3	0	0	0	0.23975	1	21205	21205		14.838	4.0143	1	177220	+		21979	8341	14475	14624	29890	29890					0.020558223544639986
VFDLAEPLF	9	Unmodified	_VFDLAEPLF_					0	0	0			REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	525.778951	1049.54335	0.22462	0.0001181	0.060237	3.1671E-05	0.28485	0.00014977	525.7791027319466	86.111	0.62093	86.111	85.908	86.529	0	0.0070946	-0.00016742	NaN	20.454	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138370	+		21980	8341	14475	14624							0.020558223544639986
VFDLIQELF	9	Unmodified	_VFDLIQELF_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.3048095703125	2	562.305332	1122.59611	-0.026281	-1.4778E-05	1.8986	0.0010676	1.8723	0.0010528	562.3066406551136	107.62	0.10612	107.62	107.52	107.62	0					18	11	2	0	0	0	0.071704	1	27774	27774		38.615	14.594	1	684750			21981	2167	14476	14625	29891	29891					0.039717804172596516
VFDLIQELF	9	Unmodified	_VFDLIQELF_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3056640625	2	562.305332	1122.59611	0.34409	0.00019348	-0.91356	-0.0005137	-0.56947	-0.00032022	562.3049056366124	107.6	0.14084	107.62	107.49	107.63	0.022224					26	16	2	0	0	0	0.28919	1	27548	27548		8.1555	2.4237	1	664740			21982	2167	14476	14625	29892	29892					0.039717804172596516
VFDLQWLEL	9	Unmodified	_VFDLQWLEL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.8109741210938	2	581.810782	1161.60701	0.27926	0.00016248	0.88101	0.00051258	1.1603	0.00067506	581.8108703731285	104.23	0.26077	104.23	104.07	104.33	0					37	23	3	0	0	0	0.1019	1	26814	26814		32.037	17.199	1	288740			21983	456	14477	14626	29893	29893					0.03267182791569212
VFDLQWLEL	9	Unmodified	_VFDLQWLEL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.8108520507812	2	581.810782	1161.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.16	1	104.2	103.7	104.7	0.03791								0	0	0	0.1066	1	26623	26623		32.037	15.888	1				21984	456	14477	14626	29894	29894					0.03267182791569212
VFDLSEKL	8	Unmodified	_VFDLSEKL_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.7635192871094	2	475.7633	949.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.396	1	58.396	57.896	58.896	0								0	0	0	0.383	1	12868	12868		22.736	2.2827	1				21985	2141	14478	14627	29895	29895					0.03527249320381998
VFDLVADR	8	Unmodified	_VFDLVADR_					0	0	0			REV__ENST00000494069.1_1_3:197566242-197575018:+|nuORF	REV__ENST00000494069.1_1_3:197566242-197575018:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.72174072265625	2	467.753267	933.491981	0.29708	0.00013896	-0.17223	-8.0562E-05	0.12485	5.8399E-05	467.7533135420361	47.744	0.3573	47.744	47.583	47.941	0					14	11	2	0	0	0	0.3576	1	9661	9661		8.5933	0	1	80896	+		21986	10692	14479	14628	29896	29896					0.022574983804133808
VFDLVELEVL	10	Unmodified	_VFDLVELEVL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8330688476562	2	588.331547	1174.64854	0.5228	0.00030758	-0.013877	-8.1643E-06	0.50892	0.00029941	588.3313234793332	101.13	0.254	101.13	101.02	101.27	0					21	13	2	0	0	0	0.36006	2	25914	25895;25914		16.149	3.4953	1	64622			21987	2808	14480	14629	29897;29898	29898					0.06820318760242117
VFDLVELEVL	10	Unmodified	_VFDLVELEVL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.2904052734375	2	588.331547	1174.64854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101	1	101.04	100.54	101.54	0.042839								0	0	0	0.26818	1	25695	25695		21.537	9.2963	1				21988	2808	14480	14629	29899	29899					0.06820318760242117
VFDLVELEVL	10	Unmodified	_VFDLVELEVL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3323364257812	2	588.331547	1174.64854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.14	1	101.18	100.68	101.68	0.042839								0	0	0	0.27728	1	25738	25738		20.415	8.1739	1				21989	2808	14480	14629	29900	29900					0.06820318760242117
VFDPKVFTF	9	Unmodified	_VFDPKVFTF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2950439453125	2	550.294768	1098.57498	0.093107	5.1237E-05	0.42952	0.00023636	0.52263	0.0002876	550.2949367039698	72.811	0.75682	72.811	72.556	73.313	0					97	26	5	0	0	0	0.0011298	4	17272	17226;17272;17319;17384		121.35	87.243	1	5437900			21990	1753	14481	14630	29901;29902;29903;29904	29902					0.029638151084100173
VFDPKVFTF	9	Unmodified	_VFDPKVFTF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2949829101562	2	550.294768	1098.57498	0.25761	0.00014176	0.21445	0.00011801	0.47206	0.00025977	550.2948069781245	72.705	0.8875	72.761	72.514	73.401	0.055939					98	31	5	0	0	0	0.00046066	4	17099	17040;17048;17099;17142		132.38	90.424	1	5777200			21991	1753	14481	14630	29905;29906;29907;29908	29907					0.029638151084100173
VFDPVQKTL	9	Unmodified	_VFDPVQKTL_					0	0	0		ENST00000531261.1_1_11:62365080-62365595:-|nuORF;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant;ENSG00000149480|ENST00000278823|MTA2	ENST00000531261.1_1_11:62365080-62365595:-|nuORF	ENST00000531261.1_1_11:62365080-62365595:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7969970703125	2	523.797675	1045.5808	0.15635	8.1894E-05	-0.43528	-0.000228	-0.27894	-0.00014611	523.7971885820242	51.021	0.3223	51.021	50.856	51.179	0					18	10	2	0	0	0	0.1646	1	10637	10637		22.658	11.163	1	113350			21992	3405	14482	14631	29909	29909					0.05982913620096042
VFDPVQKTL	9	Unmodified	_VFDPVQKTL_					0	0	0		ENST00000531261.1_1_11:62365080-62365595:-|nuORF;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant;ENSG00000149480|ENST00000278823|MTA2	ENST00000531261.1_1_11:62365080-62365595:-|nuORF	ENST00000531261.1_1_11:62365080-62365595:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.79736328125	2	523.797675	1045.5808	0.18546	9.7145E-05	-0.14593	-7.6436E-05	0.039538	2.071E-05	523.7973583998136	50.977	0.48886	51.047	50.821	51.31	0.069874					24	18	2	0	0	0	0.22083	1	10488	10488		16.149	3.6176	1	85421			21993	3405	14482	14631	29910	29910					0.05982913620096042
VFDQIRDELQ	10	Unmodified	_VFDQIRDELQ_					0	0	0			REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF	REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.2501525878906	3	421.550698	1261.63027	-0.12541	-5.2866E-05	0.13546	5.7105E-05	0.010056	4.239E-06	421.88501248428355	33.939	0.36597	34.016	33.883	34.249	0.076244					25	14	2	0	0	0	0.31853	1	5336	5336		0.62683	0	1	31382	+		21994	8021	14483	14632	29911	29911					0.009915768382370516
VFDTAIAHL	9	Unmodified	_VFDTAIAHL_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7689208984375	2	493.768917	985.523281	0.57342	0.00028314	-0.28391	-0.00014018	0.28951	0.00014295	493.76866582257253	60.434	0.79139	60.434	60.211	61.002	0					49	28	3	0	0	0	1.2423E-07	1	13495	13495		139.54	85.968	1	329040			21995	4844	14484	14633	29912	29912					0.029940714145027414
VFDTAIAHL	9	Unmodified	_VFDTAIAHL_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.7688293457031	2	493.768917	985.523281	0.28502	0.00014073	-0.24216	-0.00011957	0.042856	2.1161E-05	493.76874969315145	60.338	0.76195	60.411	60.211	60.973	0.073421					46	26	3	0	0	0	5.7978E-07	1	13326	13326		125.62	72.049	1	348550			21996	4844	14484	14633	29913	29913					0.029940714145027414
VFDTSIAQL	9	Unmodified	_VFDTSIAQL_					0	0	0		ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	ENSG00000196470|ENST00000394725|SIAH1	ENSG00000196470|ENST00000394725|SIAH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2652587890625	2	497.266207	992.517862	0.28353	0.00014099	-0.96374	-0.00047923	-0.6802	-0.00033824	497.2654408327324	71.792	0.41399	71.792	71.584	71.998	0					33	14	3	0	0	0	0.0034419	1	16961	16961		106.94	45.583	1	352720			21997	5225	14485	14634	29914	29914					0.021303478320305658
VFDTSIAQL	9	Unmodified	_VFDTSIAQL_					0	0	0		ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	ENSG00000196470|ENST00000394725|SIAH1	ENSG00000196470|ENST00000394725|SIAH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.26531982421875	2	497.266207	992.517862	0.25035	0.00012449	-0.7243	-0.00036017	-0.47395	-0.00023568	497.26573742002284	71.748	0.55465	71.804	71.597	72.152	0.055931					42	19	3	0	0	0	0.0046221	2	16789	16789;16833		86.332	34.063	1	327190			21998	5225	14485	14634	29915;29916	29915					0.021303478320305658
VFDVALLDL	9	Unmodified	_VFDVALLDL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.7869873046875	2	502.786776	1003.559	0.35841	0.0001802	0.20463	0.00010289	0.56304	0.00028309	502.78669831554913	96.591	0.66025	96.591	96.359	97.02	0					58	31	3	0	0	0	0.026209	1	24521	24521		53.833	3.8998	1	847340			21999	2190	14486	14635	29917	29917					0.057361088715197184
VFDVALLDL	9	Unmodified	_VFDVALLDL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.7868957519531	2	502.786776	1003.559	0.39824	0.00020023	0.18351	9.2265E-05	0.58175	0.00029249	502.78668991387	96.508	0.67496	96.547	96.379	97.054	0.039772					71	34	3	0	0	0	0.0084662	2	24352	24312;24352		71.922	7.8056	1	678520			22000	2190	14486	14635	29918;29919	29919					0.057361088715197184
VFDVIIRCF	9	Unmodified	_VFDVIIRCF_					0	0	0		ENST00000502888.1_1_5:140062654-140070871:-|nuORF;ENST00000518126.5_1_5:140059363-140070889:-|nuORF;nc|ENSG00000170445|P12081-4|HARS1;ENSG00000170445|ENST00000504156|HARS1	ENST00000502888.1_1_5:140062654-140070871:-|nuORF	ENST00000502888.1_1_5:140062654-140070871:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3033447265625	2	556.30207	1110.58959	0.58027	0.0003228	0.16908	9.406E-05	0.74935	0.00041686	556.302040746376	82.14	0.5158	82.161	81.938	82.454	0.021866					29	18	3	0	0	0	0.012041	1	20013	20013		63.961	27.833	1	156560			22001	4394	14487	14636	29920	29920					0.03871563984921522
VFDVIIRCF	9	Unmodified	_VFDVIIRCF_					0	0	0		ENST00000502888.1_1_5:140062654-140070871:-|nuORF;ENST00000518126.5_1_5:140059363-140070889:-|nuORF;nc|ENSG00000170445|P12081-4|HARS1;ENSG00000170445|ENST00000504156|HARS1	ENST00000502888.1_1_5:140062654-140070871:-|nuORF	ENST00000502888.1_1_5:140062654-140070871:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	556.30207	1110.58959	0.77087	0.00042884	-0.26597	-0.00014796	0.50491	0.00028088	556.3020597478755	82.215	0.49465	82.215	81.931	82.426	0	0.026569	-0.00023602	NaN	63.961	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140320			22002	4394	14487	14636							0.03871563984921522
VFDVSHNAV	9	Unmodified	_VFDVSHNAV_					0	0	0		nc|ENSG00000113615|O95486-2|SEC24A;ENSG00000113615|ENST00000398844|SEC24A	nc|ENSG00000113615|O95486-2|SEC24A	nc|ENSG00000113615|O95486-2|SEC24A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.24859619140625	2	494.248349	986.482145	-0.15602	-7.7113E-05	0.082457	4.0754E-05	-0.073563	-3.6358E-05	494.2484308435114	42.913	0.47045	42.913	42.708	43.179	0					19	15	2	0	0	0	0.27929	1	8175	8175		9.3831	2.0939	1	36534			22003	1810	14488	14637	29921	29921					-0.011636896249569872
VFDWIEANL	9	Unmodified	_VFDWIEANL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.7796630859375	2	553.779482	1105.54441	0.40061	0.00022185	0.25258	0.00013988	0.6532	0.00036173	553.7795637151904	90.456	0.84801	90.456	90.184	91.032	0					102	31	4	0	0	0	8.9172E-06	2	22617	22617;22659		149.91	53.629	1	2509400			22004	1862	14489	14638	29922;29923	29922					-0.004139632766509749
VFDWIEANL	9	Unmodified	_VFDWIEANL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7798461914062	2	553.779482	1105.54441	0.22807	0.0001263	0.33118	0.0001834	0.55924	0.0003097	553.7796304425556	90.383	1.0248	90.417	90.143	91.168	0.034065					121	40	4	0	0	0	8.9172E-06	3	22486	22443;22486;22535		149.91	62.495	1	3176700			22005	1862	14489	14638	29924;29925;29926	29925					-0.004139632766509749
VFEEAFFSF	9	Unmodified	_VFEEAFFSF_					0	0	0		SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant;nc|ENSG00000004939|P02730-2|SLC4A1;ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant	SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7606201171875	2	561.760758	1121.50696	0.50492	0.00028364	-0.30496	-0.00017132	0.19996	0.00011233	561.7606785613491	93.906	0.50715	93.906	93.71	94.218	0					28	25	2	0	0	0	0.015682	2	23679	23679;23740		61.357	35.089	1	349020			22006	341	14490	14639	29927;29928	29927					-0.04893054542230857
VFEEAFFSF	9	Unmodified	_VFEEAFFSF_					0	0	0		SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant;nc|ENSG00000004939|P02730-2|SLC4A1;ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant	SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7603759765625	2	561.760758	1121.50696	0.48405	0.00027192	0.023564	1.3238E-05	0.50761	0.00028516	561.7606614050063	93.965	0.51529	94.003	93.734	94.25	0.038094					39	25	2	0	0	0	0.0097093	2	23537	23537;23595		68.081	42.681	1	275360			22007	341	14490	14639	29929;29930	29929					-0.04893054542230857
VFEEPPPFFP	10	Unmodified	_VFEEPPPFFP_					0	0	0			REV__ENSG00000214753|ENST00000301785|HNRNPUL2	REV__ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2918090820312	2	603.297507	1204.58046	0.61063	0.00036839	-2.3027	-0.0013892	-1.6921	-0.0010208	603.296098191658	87.83	0.51153	87.83	87.402	87.914	0					26	16	2	0	0	0	0.43672	1	21840	21840		7.2892	1.0834	1	111820	+		22008	11009	14491	14640	29931	29931					-0.013645060997760083
VFEFYEEI	8	Unmodified	_VFEFYEEI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7705688476562	2	538.252766	1074.49098	0.47684	0.00025666	-2.7203	-0.0014642	-2.2434	-0.0012075	538.2512292209284	52.357	0.55253	52.424	52.142	52.695	0.067169					24	21	2	0	0	0	0.35713	1	10965	10965		14.582	3.7578	1	50591			22009	663	14492	14641	29932	29932					-0.04328760779139884
VFEPSWAEF	9	Unmodified	_VFEPSWAEF_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;KDM5C|p.K377*|1|0.38|ENSG00000126012|chrX:53211900-53211901|-/A|frameshift_variant;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2576293945312	2	556.258382	1110.50221	0.62508	0.00034771	-2.6962	-0.0014998	-2.0711	-0.0011521	556.2568254691297	81.93	0.59421	81.952	81.676	82.271	0.021866					32	20	2	0	0	0	0.17247	1	19925	19925		21.747	9.506	1	126780			22010	2325	14493	14642	29933	29933					-0.04861938685007772
VFEWETPVVC	10	Unmodified	_VFEWETPVVC_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5269775390625	3	403.526725	1207.55835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.345	1	76.345	75.845	76.845	0								0	0	0	0.33443	1	18348	18348		3.5871	0.5148	1				22011	5271	14494	14643	29934	29934					-0.03713053839828717
VFEWETPVVC	10	Unmodified	_VFEWETPVVC_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.5268249511719	3	403.526725	1207.55835	0.57527	0.00023214	-0.11346	-4.5785E-05	0.46181	0.00018635	403.52666342440705	75.891	0.90855	75.891	75.822	76.73	0					61	50	2	0	0	0	0.31616	1	18293	18293		5.7834	1.2546	1	3140100			22012	5271	14494	14643	29935	29935					-0.03713053839828717
VFFCLYLL	8	Unmodified	_VFFCLYLL_					0	0	0		OR10X1|p.K277Sfs*11|1|0.08|ENSG00000279111|chr1:158579072-158579072|C/-|frameshift_variant;ENSG00000279111|ENST00000623167|OR10X1	OR10X1|p.K277Sfs*11|1|0.08|ENSG00000279111|chr1:158579072-158579072|C/-|frameshift_variant	OR10X1|p.K277Sfs*11|1|0.08|ENSG00000279111|chr1:158579072-158579072|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2765808105469	2	509.277532	1016.54051	0.43001	0.00021899	-1.8657	-0.00095014	-1.4357	-0.00073115	509.27644563271446	47.396	0.46177	47.479	47.297	47.759	0.083092					31	18	3	0	0	0	0.51202	1	9399	9399		11.114	0	1	143350			22013	5766	14495	14644	29936	29936					0.0329027569595155
VFFEVSPVSF	10	Unmodified	_VFFEVSPVSF_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.29736328125	2	579.297507	1156.58046	0.38892	0.0002253	-1.4637	-0.0008479	-1.0747	-0.0006226	579.2961810443102	90.737	0.74574	90.737	90.523	91.269	0					45	26	2	0	0	0	0.041153	2	22712	22712;22756		60.074	38.327	1	501660			22014	992	14496	14645	29937;29938	29937					0.0084349390024272
VFFEVSPVSF	10	Unmodified	_VFFEVSPVSF_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2976684570312	2	579.297507	1156.58046	0.16705	9.6771E-05	-0.78407	-0.00045421	-0.61703	-0.00035744	579.2966602284476	90.681	0.77622	90.717	90.532	91.308	0.035446					67	29	4	0	0	0	0.071862	2	22550	22550;22603		51.63	31.176	1	550390			22015	992	14496	14645	29939;29940	29939					0.0084349390024272
VFFHFLVI	8	Unmodified	_VFFHFLVI_					0	0	0		nc|ENSG00000112144|Q9UPZ9-2|CILK1	nc|ENSG00000112144|Q9UPZ9-2|CILK1	nc|ENSG00000112144|Q9UPZ9-2|CILK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7877197265625	2	511.297114	1020.57967	0.44577	0.00022792	-3.0162	-0.0015422	-2.5704	-0.0013142	511.2952052615187	64.903	0.29486	64.972	64.792	65.087	0.068916					15	10	2	0	0	0	0.46808	1	14681	14681		17.087	0	1	61942			22016	7485	14497	14646	29941	29941					0.07020744041835769
VFFIPESRPA	10	Unmodified	_VFFIPESRPA_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.30078125	2	581.816399	1161.61824	0.59655	0.00034708	0.42343	0.00024636	1.02	0.00059344	581.8166066322897	69.84	0.38078	69.9	69.723	70.104	0.060562					32	15	3	0	0	0	0.31643	1	16261	16261		9.3831	0	1	222270			22017	1460	14498	14647	29942	29942					0.04390004885726739
VFFKGFKWGF	10	Unmodified	_VFFKGFKWGF_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.56207275390625	3	421.56221	1261.6648	0.60787	0.00025626	-0.67996	-0.00028665	-0.07209	-3.039E-05	421.56179925770135	71.143	0.48204	71.143	70.964	71.447	0					25	15	3	0	0	0	0.31766	1	16760	16760		5.7834	2.1964	1	134470			22018	2057	14499	14648	29943	29943					0.04443489507639242
VFFKGFKWGF	10	Unmodified	_VFFKGFKWGF_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5622863769531	3	421.56221	1261.6648	0.35789	0.00015087	-0.78616	-0.00033141	-0.42827	-0.00018054	421.5619617239482	71.069	0.47653	71.128	70.933	71.41	0.058578					39	16	3	0	0	0	0.39071	1	16582	16582		12.873	9.2855	1	137960			22019	2057	14499	14648	29944	29944					0.04443489507639242
VFFQYLEF	8	Unmodified	_VFFQYLEF_					0	0	0			REV__ENSG00000139131|ENST00000324868|YARS2	REV__ENSG00000139131|ENST00000324868|YARS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.260009765625	2	546.773668	1091.53278	0.49773	0.00027215	-3.7678	-0.0020601	-3.27	-0.001788	547.2743458299739	57.52	0.27138	57.52	57.378	57.65	0					12	9	2	0	0	0	0.49441	1	12627	12627		13.508	0.97634	1	119390	+		22020	9332	14500	14649	29945	29945					-0.009321602999534662
VFFRPFPIS	9	Unmodified	_VFFRPFPIS_					0	0	0			REV__ENST00000537619.6_1_12:71058179-71058296:-|nuORF	REV__ENST00000537619.6_1_12:71058179-71058296:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7977905273438	2	555.310752	1108.60695	0.63871	0.00035468	0.2358	0.00013094	0.87451	0.00048563	555.3103271986097	74.806	0.24405	74.854	74.727	74.971	0.048538					11	8	2	0	0	0	0.23975	1	17698	17698		14.838	0	1	37347	+		22021	12391	14501	14650	29946	29946					0.056992275822494776
VFFTEKFGF	9	Unmodified	_VFFTEKFGF_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000465624.5_1_3:158537406-158546768:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7994995117188	2	561.286943	1120.55933	0.56812	0.00031888	1.032	0.00057926	1.6001	0.00089814	561.2877368367908	71.195	0.21286	71.254	71.133	71.346	0.058578					13	7	2	0	0	0	0.24929	1	16637	16637		9.3831	0.63772	1	51432			22022	2048	14502	14651	29947	29947					0.003875285913636617
VFGCPCQASF	10	Unmodified	_VFGCPCQASF_					0	0	0			REV__ENST00000566568.1_1_16:31121058-31121856:+|nuORF	REV__ENST00000566568.1_1_16:31121058-31121856:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7552490234375	2	529.725338	1057.43612	0.38777	0.00020541	-3.908	-0.0020702	-3.5203	-0.0018648	529.7230581795936	55.691	0.37366	55.756	55.548	55.922	0.065128					19	13	2	0	0	0	0.31691	1	11863	11863		7.2892	0.93513	1	76207	+		22023	12504	14503	14652	29948	29948					-0.09029794123080137
VFGDGDNDIR	10	Unmodified	_VFGDGDNDIR_					0	0	0			REV__nc|ENSG00000049449|Q15293-2|RCN1	REV__nc|ENSG00000049449|Q15293-2|RCN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.257080078125	2	554.256902	1106.49925	0.030059	1.666E-05	-0.12332	-6.8349E-05	-0.093257	-5.1688E-05	554.2567768409399	31.889	0.85616	31.889	31.649	32.505	0					69	34	4	0	0	0	0.44496	1	4916	4916		5.7319	0.83484	1	121750	+		22024	12747	14504	14653	29949	29949					-0.049738138098064155
VFGKSAYLF	9	Unmodified	_VFGKSAYLF_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3016357421875	2	516.28166	1030.54877	0.51314	0.00026492	-0.40667	-0.00020995	0.10647	5.4969E-05	516.281511993361	60.618	0.26339	60.618	60.456	60.72	0					11	9	2	0	0	0	0.2094	1	13520	13520		22.736	5.6497	1	72053			22025	4096	14505	14654	29950	29950					0.03471545936940856
VFGTDEKDLA	10	Unmodified	_VFGTDEKDLA_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-3|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-3|EFCAB6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7705078125	2	547.771854	1093.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.602	1	16.602	16.102	17.102	0								0	0	0	0.33892	1	759	759		1.4819	0.68827	1		+		22026	10719	14506	14655	29951	29951					-0.01386874864465426
VFHHWQIV	8	Unmodified	_VFHHWQIV_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7379760742188	2	533.285069	1064.55558	0.59518	0.0003174	0.28307	0.00015096	0.87825	0.00046836	533.7866612164044	55.062	0.54978	55.062	54.798	55.347	0					23	20	2	0	0	0	0.3576	1	11916	11916		2.3027	0.4585	1	205390			22027	1613	14507	14656	29952	29952					0.025889036081707673
VFHRAGLL	8	Unmodified	_VFHRAGLL_					0	0	0		nc|ENSG00000089101|Q8NHU2-3|CFAP61;nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61;CFAP61|p.Y/YNRYHLPMYAWPGIVX1223Y/YNRYHLPMYAWPGIVX|1|0.2|ENSG00000089101|chr20:20360364-20360365|-/TAACCGCTACCACCTGCCCATGTACGCGTGGCCAGGCATCGTT|frameshift_variant	nc|ENSG00000089101|Q8NHU2-3|CFAP61	nc|ENSG00000089101|Q8NHU2-3|CFAP61	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7734680175781	2	456.774337	911.534121	0.5509	0.00025164	-1.6677	-0.00076178	-1.1168	-0.00051014	456.7734640256252	80.755	0.45934	80.779	80.592	81.051	0.023605					33	15	3	0	0	0	0.45077	1	19583	19583		19.439	2.4967	1	190420			22028	129	14508	14657	29953	29953					0.07481518579481872
VFHSPSSFQT	10	Unmodified	_VFHSPSSFQT_					0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.772216796875	2	568.772188	1135.52982	0.14968	8.5135E-05	0.27273	0.00015512	0.42241	0.00024026	568.7723652694077	52.556	1.4549	52.556	52.305	53.76	0					159	55	3	0	0	0	0.29844	2	11103	11061;11103		22.736	22.736	1	2688100			22029	6486	14509	14658	29954;29955	29955					-0.03252035424748101
VFHSPSSFQT	10	Unmodified	_VFHSPSSFQT_					0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7723388671875	2	568.772188	1135.52982	0.28001	0.00015926	0.07748	4.4068E-05	0.35749	0.00020333	568.7722122171247	52.513	1.1823	52.58	52.339	53.521	0.067173					135	52	3	0	0	0	0.29844	4	10952	10907;10952;10992;10998		22.736	7.898	1	3090500			22030	6486	14509	14658	29956;29957;29958;29959	29957					-0.03252035424748101
VFHVGGFR	8	Unmodified	_VFHVGGFR_					0	0	0			REV__CLVS1|p.P214A|1|0.03|ENSG00000177182|chr8:61454150-61454150|C/G|missense_variant	REV__CLVS1|p.P214A|1|0.03|ENSG00000177182|chr8:61454150-61454150|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7517395019531	2	459.750862	917.487171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.554	1	39.642	39.142	40.142	0.088562								0	0	0	0.38822	1	7032	7032		0	0	1		+		22031	7823	14510	14659	29960	29960					0.02512659028343478
VFIDEKSDGF	10	Unmodified	_VFIDEKSDGF_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2848510742188	2	578.779679	1155.5448	0.51792	0.00029976	3.8101	0.0022052	4.328	0.002505	579.2841431296988	68.639	0.86461	68.639	68.267	69.132	0					105	31	4	0	0	0	0.36006	1	15997	15997		16.149	0.30192	1	1289400			22032	3665	14511	14660	29961	29961					-0.02674588347417739
VFIDEKSDGF	10	Unmodified	_VFIDEKSDGF_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7800903320312	2	578.779679	1155.5448	0.31279	0.00018104	-0.45333	-0.00026238	-0.14054	-8.1342E-05	578.7791988768606	69.263	0.61487	69.325	69.054	69.669	0.062119					35	22	2	0	0	0	0.44246	1	15974	15974		6.2058	0	1	347130			22033	3665	14511	14660	29962	29962					-0.02674588347417739
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.300537109375	2	539.300581	1076.58661	0.050361	2.716E-05	0.045028	2.4284E-05	0.09539	5.1444E-05	539.3005215814201	46.088	0.6218	46.088	45.874	46.496	0					66	21	4	0	0	0	0.0040167	3	9106	9106;9150;9192		103.42	34.315	1	1079000			22034	3390	14512	14661	29963;29964;29965	29963					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3007202148438	2	539.300581	1076.58661	0.23251	0.00012539	0.12827	6.9174E-05	0.36077	0.00019456	539.3005423011566	45.979	0.60572	46.064	45.853	46.459	0.085617					66	21	4	0	0	0	0.0039507	2	8988	8941;8988		103.82	21.294	1	952700			22035	3390	14512	14661	29966;29967	29967					0.05138012131760661
VFIELPLSI	9	Unmodified	_VFIELPLSI_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8135375976562	2	515.812793	1029.61103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.198	1	98.198	97.698	98.698	0								0	0	0	0.16041	1	24998	24998		24.021	5.8742	1				22036	2728	14513	14662	29968	29968					0.09741272285282321
VFIELPLSI	9	Unmodified	_VFIELPLSI_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.812744140625	2	515.812793	1029.61103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.354	1	98.354	97.854	98.854	0								0	0	0	0.22786	1	25045	25045		13.906	0	1				22037	2728	14513	14662	29969	29969					0.09741272285282321
VFIELPLSI	9	Unmodified	_VFIELPLSI_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.8128051757812	2	515.812793	1029.61103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.175	1	98.217	97.717	98.717	0.041931								0	0	0	0.065902	1	24838	24838		43.858	19.838	1				22038	2728	14513	14662	29970	29970					0.09741272285282321
VFIFKGNQF	9	Unmodified	_VFIFKGNQF_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7501831054688	2	550.300384	1098.58622	0.44316	0.00024387	-1.6826	-0.00092594	-1.2395	-0.00068208	550.2988866105342	61.284	0.44722	61.284	60.971	61.418	0					35	15	3	0	0	0	0.23598	1	13743	13743		15.847	10.087	1	169560			22039	3422	14514	14663	29971	29971					0.040866372025675446
VFIFKGNQF	9	Unmodified	_VFIFKGNQF_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.750244140625	2	550.300384	1098.58622	0.38061	0.00020945	-1.0207	-0.00056168	-0.64006	-0.00035223	550.2994786789047	61.127	0.50367	61.201	60.91	61.414	0.073421					36	16	3	0	0	0	0.20845	1	13553	13553		21.747	5.8995	1	179520			22040	3422	14514	14663	29972	29972					0.040866372025675446
VFIICIVIA	9	Unmodified	_VFIICIVIA_					0	0	0		ENST00000589851.1_1_19:5219319-5220009:-|nuORF;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	ENST00000589851.1_1_19:5219319-5220009:-|nuORF	ENST00000589851.1_1_19:5219319-5220009:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.806640625	2	495.806457	989.598361	0.58631	0.0002907	-0.54092	-0.00026819	0.045385	2.2502E-05	495.80607666854814	85.607	0.76513	85.607	85.339	86.104	0					51	33	2	0	0	0	0.31136	1	21154	21154		5.2307	0	1	224400			22041	1468	14515	14664	29973	29973					0.1031453762137744
VFIIVPAIF	9	Unmodified	_VFIIVPAIF_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.82049560546875	2	509.820421	1017.62629	0.015415	7.859E-06	0.23369	0.00011914	0.24911	0.000127	509.82046424313313	105.7	0.65347	105.7	105.5	106.16	0					131	65	3	0	0	0	0.038949	3	27273	27206;27273;27308		45.75	17.577	1	456680			22042	3701	14516	14665	29974;29975;29976	29975					0.11818183873140242
VFIIVPAIF	9	Unmodified	_VFIIVPAIF_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.82037353515625	2	509.820421	1017.62629	0.29818	0.00015202	-0.10437	-5.3209E-05	0.19382	9.8811E-05	509.8202658702244	105.71	0.47198	105.74	105.52	106	0.029739					125	52	4	0	0	0	0.038949	4	27047	27015;27047;27084;27122		45.75	17.577	1	384830			22043	3701	14516	14665	29977;29978;29979;29980	29978					0.11818183873140242
VFIKDANASI	10	Unmodified	_VFIKDANASI_					0	0	0			REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3012084960938	2	539.300581	1076.58661	0.23251	0.00012539	0.12827	6.9174E-05	0.36077	0.00019456	539.3005423011566	45.979	0.60572	46.064	45.853	46.459	0.085617					66	21	4	0	0	0	0.36848	1	9043	9043		15.248	0.8431	1	952700	+		22044	13144	14517	14666	29981	29981					0.05138012131760661
VFIKYLPEW	9	Unmodified	_VFIKYLPEW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8323364257812	2	597.831517	1193.64848	0.31614	0.000189	0.75462	0.00045114	1.0708	0.00064013	597.8318065453932	74.203	0.741	74.252	74.016	74.757	0.048546					56	26	3	0	0	0	0.010235	1	17535	17535		66.457	47.2	1	519150			22045	896	14518	14667	29982	29982					0.059403635508715524
VFIKYLPEW	9	Unmodified	_VFIKYLPEW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	597.831517	1193.64848	0.25141	0.0001503	0.88835	0.00053108	1.1398	0.00068138	597.8318490323358	74.235	0.7803	74.235	74.074	74.854	0	-0.0084379	6.3585E-05	NaN	66.457	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	709280			22046	896	14518	14667							0.059403635508715524
VFIPAAALDLF	11	Unmodified	_VFIPAAALDLF_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8375244140625	2	588.8368	1175.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.5	1	104.5	104	105	0								0	0	0	0.32586	1	26892	26892		5.7319	0.43497	1				22047	690	14519	14668	29983	29983					0.07824346205325128
VFIPAAALDLF	11	Unmodified	_VFIPAAALDLF_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8364868164062	2	588.8368	1175.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.41	1	104.44	103.94	104.94	0.034004								0	0	0	0.30267	1	26692	26692		13.906	9.3772	1				22048	690	14519	14668	29984	29984					0.07824346205325128
VFIPMVVLW	9	Oxidation (M)	_VFIPM(Oxidation (M))VVLW_		VFIPM(1)VVLW		VFIPM(46)VVLW	0	0	1		ENSG00000130733|ENST00000586748|YIPF2	ENSG00000130733|ENST00000586748|YIPF2	ENSG00000130733|ENST00000586748|YIPF2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2992553710938	2	560.317189	1118.61982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.21	1	101.21	100.71	101.71	0								0	0	0	0.059835	1	25913	25913		45.75	33.218	1				22049	2491	14520	14669	29985	29985		159			0.06525922650098437
VFISIVALL	9	Unmodified	_VFISIVALL_					0	0	0			REV__ENST00000442510.6_2_1:198725342-198725402:+|nuORF	REV__ENST00000442510.6_2_1:198725342-198725402:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.8175964355469	2	487.817879	973.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.65	1	103.65	103.15	104.15	0								0	0	0	0.20792	1	26651	26651		16.942	2.3606	1		+		22050	11891	14521	14670	29986	29986					0.13333880010532084
VFISSSLNTF	10	Unmodified	_VFISSSLNTF_					0	0	0		ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.793212890625	2	557.792589	1113.57063	0.59821	0.00033368	-0.51703	-0.00028839	0.081184	4.5284E-05	557.7924682751169	74.898	0.48598	74.898	74.635	75.121	0					38	17	3	0	0	0	1.4931E-05	1	17886	17886		132.38	76.203	1	285580			22051	1457	14522	14671	29987	29987					0.01838305894852965
VFISSSLNTF	10	Unmodified	_VFISSSLNTF_					0	0	0		ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB;ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	ENST00000392178.8_1_19:36606435-36612715:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7931518554688	2	557.792589	1113.57063	0.59627	0.0003326	-0.43747	-0.00024402	0.1588	8.8578E-05	557.792448517958	74.887	0.49675	74.932	74.589	75.086	0.044769					41	17	3	0	0	0	5.0202E-05	1	17718	17718		110.79	70.843	1	277520			22052	1457	14522	14671	29988	29988					0.01838305894852965
VFIVSFISI	9	Unmodified	_VFIVSFISI_					0	0	0		tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7948608398438	2	512.807511	1023.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.073	1	66.139	65.639	66.639	0.066872								0	0	0	0.27427	1	15066	15066		4.3292	2.0265	1				22053	13642	14523	14672	29989	29989					0.08961289630860847
VFIVSFISI	9	Unmodified	_VFIVSFISI_					0	0	0		tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7949829101562	2	512.807511	1023.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.239	1	66.306	65.806	66.806	0.066872								0	0	0	0.25992	1	15117	15117		7.2892	2.5332	1				22054	13642	14523	14672	29990	29990					0.08961289630860847
VFIVVTLPSF	10	Unmodified	_VFIVVTLPSF_					0	0	0			REV__ENSG00000138600|ENST00000261854|SPPL2A	REV__ENSG00000138600|ENST00000261854|SPPL2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3214111328125	2	561.333893	1120.65323	0.45592	0.00025592	0.020172	1.1323E-05	0.47609	0.00026724	561.33382710957	73.766	0.75502	73.818	73.591	74.346	0.052567					55	27	4	0	0	0	0.35264	1	17349	17349		16.942	1.0951	1	798360	+		22055	9317	14524	14673	29991	29991					0.09773247693647136
VFKEIKSI	8	Unmodified	_VFKEIKSI_					0	0	0			REV__tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1	REV__tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2968444824219	2	482.29731	962.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.224	1	54.29	53.79	54.79	0.065128								0	0	0	0.38822	1	11462	11462		13.906	0.86358	1		+		22056	13040	14525	14674	29992	29992					0.09728118971031563
VFKELAQGTF	10	Unmodified	_VFKELAQGTF_					0	0	0			REV__ENSG00000125998|ENST00000374408|FAM83C	REV__ENSG00000125998|ENST00000374408|FAM83C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.293701171875	2	570.308406	1138.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.183	1	31.183	30.683	31.683	0								0	0	0	0.3315	1	4648	4648		10.151	6.2062	1		+		22057	8982	14526	14675	29993	29993					0.038502986487856106
VFKQLYPQ	8	Unmodified	_VFKQLYPQ_					0	0	0		tr|U7SKI4|U7SKI4_FUSNUMembraneiron-sulfurcontainingproteinFtrD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02003PE=4SV=1	tr|U7SKI4|U7SKI4_FUSNUMembraneiron-sulfurcontainingproteinFtrD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02003PE=4SV=1	tr|U7SKI4|U7SKI4_FUSNUMembraneiron-sulfurcontainingproteinFtrD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02003PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.78704833984375	2	511.78711	1021.55967	0.19043	9.7457E-05	-0.034437	-1.7624E-05	0.15599	7.9833E-05	511.7870335302214	48.939	0.48108	48.939	48.714	49.195	0					35	16	3	0	0	0	0.33102	1	10010	10010		32.117	8.0964	1	213360			22058	13488	14527	14676	29994	29994					0.04974948311235039
VFKQLYPQ	8	Unmodified	_VFKQLYPQ_					0	0	0		tr|U7SKI4|U7SKI4_FUSNUMembraneiron-sulfurcontainingproteinFtrD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02003PE=4SV=1	tr|U7SKI4|U7SKI4_FUSNUMembraneiron-sulfurcontainingproteinFtrD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02003PE=4SV=1	tr|U7SKI4|U7SKI4_FUSNUMembraneiron-sulfurcontainingproteinFtrD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02003PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.26922607421875	2	511.78711	1021.55967	0.10714	5.4833E-05	-0.014199	-7.267E-06	0.092941	4.7566E-05	511.7869977909497	48.802	0.46415	48.879	48.691	49.155	0.076603					33	16	3	0	0	0	0.3528	1	9844	9844		18.135	3.2967	1	169340			22059	13488	14527	14676	29995	29995					0.04974948311235039
VFKQMEYF	8	Unmodified	_VFKQMEYF_					0	0	0		tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1	tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1	tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7825317382812	2	546.265153	1090.51575	0.071	3.8785E-05	1.8476	0.0010093	1.9186	0.0010481	546.7699556759103	39.434	0.14894	39.434	39.347	39.496	0					6	5	2	0	0	0	0.53257	1	7141	7141		6.3541	1.1234	1	18633			22060	13455	14528	14677	29996	29996					-0.025884041774133948
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.2684326171875	2	470.268553	938.522553	0.023022	1.0826E-05	0.029084	1.3677E-05	0.052106	2.4504E-05	470.26850409962617	52.114	0.76764	52.114	51.937	52.704	0					49	26	3	0	0	0	0.072867	1	10956	10956		53.833	19.645	1	201430			22061	6188	14529	14678	29997	29997					0.05083276765469691
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.26824951171875	2	470.268553	938.522553	0.0077149	3.6281E-06	0.20502	9.6415E-05	0.21274	0.00010004	470.26850117629414	52.063	0.55428	52.131	51.938	52.493	0.067173					42	21	3	0	0	0	0.098463	1	10840	10840		32.786	13.347	1	190350			22062	6188	14529	14678	29998	29998					0.05083276765469691
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	470.268553	938.522553	0.0077149	3.6281E-06	0.20502	9.6415E-05	0.21274	0.00010004	470.26850117629414	52.063	0.55428	52.131	51.938	52.493	0.067173	0.0083226	0.00010619	NaN	53.833	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190350			22063	6188	14529	14678							0.05083276765469691
VFLNAPRQYI	10	Unmodified	_VFLNAPRQYI_					0	0	0			REV__tr|U7SP89|U7SP89_FUSNUFe(3+)ionsimportATP-bindingproteinFbpCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01770PE=4SV=1	REV__tr|U7SP89|U7SP89_FUSNUFe(3+)ionsimportATP-bindingproteinFbpCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01770PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5642395019531	3	407.564391	1219.67134	-0.11565	-4.7136E-05	-0.0047731	-1.9454E-06	-0.12043	-4.9081E-05	407.564327346896	34.44	1.0273	34.516	34.249	35.276	0.076244					141	43	4	0	0	0	0.40987	1	5558	5558		6.1918	0	1	382080	+		22064	13112	14530	14679	29999	29999					0.07029382668383732
VFLPDNGAFF	10	Unmodified	_VFLPDNGAFF_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.302978515625	2	563.782025	1125.5495	0.23866	0.00013455	1.4108	0.0007954	1.6495	0.00092995	563.7823736921844	87.432	0.63366	87.46	87.215	87.849	0.027573					43	24	3	0	0	0	0.30541	1	21679	21679		19.257	9.9096	1	447030			22065	2839	14531	14680	30000	30000					-0.008256594139993467
VFLSMWEF	8	Unmodified	_VFLSMWEF_					0	0	0		ENST00000328914.4_1_7:4805573-4805726:+|nuORF	ENST00000328914.4_1_7:4805573-4805726:+|nuORF	ENST00000328914.4_1_7:4805573-4805726:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2728271484375	2	529.754421	1057.49429	0.19224	0.00010184	-1.4888	-0.00078867	-1.2965	-0.00068684	529.7537206765952	59.499	0.45811	59.499	59.17	59.628	0					22	17	2	0	0	0	0.35759	1	13104	13104		10.183	0	1	78758			22066	6050	14532	14681	30001	30001					-0.032157892061377424
VFMFPVGLYY	10	Oxidation (M)	_VFM(Oxidation (M))FPVGLYY_		VFM(1)FPVGLYY		VFM(40)FPVGLYY	0	0	1		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.3096923828125	2	626.309561	1250.60457	0.11497	7.2008E-05	0.44082	0.00027609	0.55579	0.0003481	626.3097024094169	94.969	0.5428	94.969	94.685	95.228	0					37	22	2	0	0	0	0.14151	1	24013	24013		40.449	27.917	1	128560			22067	2701	14533	14682	30002	30002		174			-0.010709889377267245
VFMFPVGLYY	10	Oxidation (M)	_VFM(Oxidation (M))FPVGLYY_		VFM(1)FPVGLYY		VFM(40)FPVGLYY	0	0	1		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3109741210938	2	626.309561	1250.60457	0.25633	0.00016054	0.55027	0.00034464	0.80659	0.00050518	626.3098168890106	94.889	0.64034	94.928	94.692	95.332	0.038872					48	26	3	0	0	0	0.14151	1	23824	23824		40.449	27.917	1	97594			22068	2701	14533	14682	30003	30003		174			-0.010709889377267245
VFMGARNIF	9	Unmodified	_VFMGARNIF_					0	0	0			REV__ENSG00000166986|ENST00000262027|MARS1	REV__ENSG00000166986|ENST00000262027|MARS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7666625976562	2	527.778762	1053.54297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.657	1	53.657	53.157	54.157	0								0	0	0	0.25992	1	11426	11426		7.2892	2.5332	1		+		22069	10103	14534	14683	30004	30004					0.01834124153629091
VFNDVRLLL	9	Unmodified	_VFNDVRLLL_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;CAPZA1|p.T217Ffs*15|1|0.14|ENSG00000116489|chr1:112667133-112667136|ACTA/-|frameshift_variant	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.79248046875	2	544.826766	1087.63898	0.041976	2.2869E-05	0.65302	0.00035578	0.69499	0.00037865	544.8270281422984	73.084	0.34558	73.084	72.883	73.228	0					24	11	3	0	0	0	0.1076	1	17344	17344		45.74	11.637	1	199600			22070	1957	14535	14684	30005	30005					0.09866595265384603
VFNDVRLLL	9	Unmodified	_VFNDVRLLL_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;CAPZA1|p.T217Ffs*15|1|0.14|ENSG00000116489|chr1:112667133-112667136|ACTA/-|frameshift_variant	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7927856445312	2	544.826766	1087.63898	0.15616	8.5083E-05	0.48239	0.00026282	0.63855	0.0003479	544.8269405971919	73.015	0.39999	73.068	72.866	73.266	0.052574					31	13	3	0	0	0	0.1231	1	17169	17169		41.956	7.8531	1	226630			22071	1957	14535	14684	30006	30006					0.09866595265384603
VFNGLSILASF	11	Unmodified	_VFNGLSILASF_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3243408203125	2	584.324057	1166.63356	0.58342	0.00034091	-0.024159	-1.4117E-05	0.55926	0.00032679	584.3239959694323	100.79	0.51229	100.79	100.48	101	0					63	30	3	0	0	0	0.027101	2	25761	25761;25830		63.227	19.369	1	159950			22072	74	14536	14685	30007;30008	30007					0.056908716829184414
VFNGLSILASF	11	Unmodified	_VFNGLSILASF_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3238525390625	2	584.324057	1166.63356	0.79557	0.00046487	-0.34133	-0.00019945	0.45424	0.00026542	584.3238918974731	100.66	0.43169	100.7	100.54	100.97	0.042839					50	26	3	0	0	0	0.075308	1	25588	25588		51.488	18.702	1	211150			22073	74	14536	14685	30009	30009					0.056908716829184414
VFNLFRDFF	9	Unmodified	_VFNLFRDFF_					0	0	0		ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8123779296875	2	602.811116	1203.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.68	1	104.71	104.21	105.21	0.034004								0	0	0	0.27613	1	26769	26769		3.9444	0.66309	1				22074	5591	14537	14686	30010	30010					0.014020222312637998
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1	ENSG00000116001|ENST00000433529|TIA1	ENSG00000116001|ENST00000433529|TIA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2609252929688	2	530.260925	1058.5073	0.32046	0.00016993	0.18453	9.7849E-05	0.50499	0.00026778	530.2609817413339	53.406	1.5885	53.406	52.758	54.347	0					159	60	4	0	0	0	0.19307	2	11281	11237;11281		19.362	5.4559	1	875350			22075	1935	14538	14687	30011;30012	30012					-0.019616348223962632
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1	ENSG00000116001|ENST00000433529|TIA1	ENSG00000116001|ENST00000433529|TIA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2611083984375	2	530.260925	1058.5073	0.46908	0.00024874	0.06848	3.6312E-05	0.53756	0.00028505	530.260885151812	53.381	1.5205	53.446	52.825	54.346	0.06543					158	66	3	0	0	0	0.14444	1	11181	11181		24.991	9.1438	1	780180			22076	1935	14538	14687	30013	30013					-0.019616348223962632
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2687377929688	2	537.26875	1072.52295	0.24146	0.00012973	0.53838	0.00028925	0.77984	0.00041898	537.2688138743736	52.138	2.3253	52.138	51.386	53.711	0					199	85	4	0	0	0	0.10543	5	11072	10892;10940;10984;11030;11072		31.268	11.694	1	1307800			22077	3481	14539	14688	30014;30015;30016;30017;30018	30018					-0.010413483053298478
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2691650390625	2	537.26875	1072.52295	0.48935	0.00026291	0.30536	0.00016406	0.79471	0.00042697	537.2687001910977	52.154	1.7765	52.221	51.611	53.387	0.067169					192	72	4	0	0	0	0.14444	4	10762	10720;10762;10770;10859		24.991	6.8446	1	1093600			22078	3481	14539	14688	30019;30020;30021;30022	30020					-0.010413483053298478
VFPFRTFYL	9	Unmodified	_VFPFRTFYL_					0	0	0		ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENSG00000070190|ENST00000512369|DAPP1	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3240966796875	2	595.32386	1188.63317	0.20463	0.00012182	0.17124	0.00010195	0.37587	0.00022377	595.3237685643867	78.808	0.83218	78.808	78.651	79.483	0					66	28	3	0	0	0	0.081383	3	19111	19111;19161;19217		36.506	17.249	1	520150			22079	757	14540	14689	30023;30024;30025	30023					0.04639496753725325
VFPFRTFYL	9	Unmodified	_VFPFRTFYL_					0	0	0		ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENSG00000070190|ENST00000512369|DAPP1	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3244018554688	2	595.32386	1188.63317	0.17199	0.00010239	0.20842	0.00012408	0.3804	0.00022646	595.3239344526876	78.773	1.2037	78.803	78.651	79.855	0.030159					76	42	3	0	0	0	0.1019	2	18956	18956;19004		32.037	18.131	1	629890			22080	757	14540	14689	30026;30027	30026					0.04639496753725325
VFPSMPIKLQL	11	Unmodified	_VFPSMPIKLQL_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.8738403320312	2	636.872859	1271.73117	0.25988	0.00016551	0.072423	4.6124E-05	0.3323	0.00021163	636.8729053672187	79.204	0.36075	79.204	78.982	79.342	0					18	11	2	0	0	0	0.38777	1	19218	19218		7.1017	2.5729	1	71222			22081	2413	14541	14690	30028	30028					0.106169372874092
VFPSMPIKLQL	11	Unmodified	_VFPSMPIKLQL_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.8167724609375	2	636.872859	1271.73117	0.19597	0.00012481	0.25438	0.00016201	0.45035	0.00028681	636.8730637686494	79.19	0.40048	79.216	79.014	79.415	0.026436					21	13	2	0	0	0	0.31062	1	19040	19040		4.897	2.5943	1	101270			22082	2413	14541	14690	30029	30029					0.106169372874092
VFPVPLDALS	10	Unmodified	_VFPVPLDALS_					0	0	0		nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;ENSG00000003400|ENST00000286186|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2996826171875	2	529.30005	1056.58555	0.39122	0.00020707	-0.40131	-0.00021241	-0.010088	-5.3398E-06	529.2996798606857	55.617	0.48359	55.682	55.463	55.946	0.065128					26	17	2	0	0	0	0.43972	1	11932	11932		6.7232	0.96273	1	88169			22083	330	14542	14691	30030	30030					0.059517977628502194
VFPYEPFL	8	Unmodified	_VFPYEPFL_					0	0	0		nc|ENSG00000009335|Q15386-3|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.25469970703125	2	506.262936	1010.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.048	1	82.048	81.548	82.548	0								0	0	0	0.38822	1	20086	20086		5.2307	0.47466	1				22084	403	14543	14692	30031	30031					0.006484546713409145
VFQAGLVNLLF	11	Unmodified	_VFQAGLVNLLF_					0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.8555297851562	2	610.855524	1219.69649	0.23296	0.0001423	-0.054967	-3.3577E-05	0.17799	0.00010873	610.8553803265182	102.04	0.5778	102.04	101.83	102.4	0					97	42	4	0	0	0	0.099983	2	26163	26163;26211		45.74	24.203	1	293910			22085	3406	14544	14693	30032;30033	30032					0.09543437470938443
VFQAGLVNLLF	11	Unmodified	_VFQAGLVNLLF_					0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.8554077148438	2	610.855524	1219.69649	0.45949	0.00028068	-0.2826	-0.00017263	0.17689	0.00010806	610.8553255462018	101.97	0.54311	102.01	101.83	102.38	0.042656					100	45	3	0	0	0	0.042948	2	26002	25962;26002		59.368	31.74	1	368160			22086	3406	14544	14693	30034;30035	30035					0.09543437470938443
VFQDRQYQI	9	Unmodified	_VFQDRQYQI_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2916870117188	2	598.806562	1195.59857	-0.18255	-0.00010931	-0.4739	-0.00028377	-0.65645	-0.00039309	598.8061027730557	45.617	0.30827	45.617	45.474	45.782	0					17	10	2	0	0	0	0.17428	1	8998	8998		21.537	8.4945	1	60396			22087	2989	14545	14694	30036	30036					0.008596288749458836
VFQDRQYQI	9	Unmodified	_VFQDRQYQI_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.292236328125	2	598.806562	1195.59857	-0.0038782	-2.3223E-06	-0.003187	-1.9084E-06	-0.0070652	-4.2307E-06	598.806543469014	45.493	0.29766	45.579	45.475	45.773	0.085621					15	10	2	0	0	0	0.22083	1	8841	8841		16.149	3.1066	1	50491			22088	2989	14545	14694	30037	30037					0.008596288749458836
VFQKTKEVK	9	Unmodified	_VFQKTKEVK_					0	0	0		tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.830078125	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.308	1	83.33	82.83	83.83	0.021744								0	0	0	0.27782	1	20309	20309		3.5965	1.2938	1				22089	13514	14546	14695	30038	30038					0.10094577919812764
VFQNFPLLF	9	Unmodified	_VFQNFPLLF_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8101196289062	2	562.810585	1123.60662	0.48956	0.00027553	-0.0049627	-2.7931E-06	0.4846	0.00027274	562.8104712566483	99.446	0.38408	99.446	99.275	99.659	0					55	19	4	0	0	0	0.11022	2	25366	25366;25409		30.225	13.074	1	414540			22090	6322	14547	14696	30039;30040	30039					0.049758078623654
VFQNFPLLF	9	Unmodified	_VFQNFPLLF_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.810791015625	2	562.810585	1123.60662	0.55837	0.00031426	0.0083454	4.6969E-06	0.56672	0.00031896	562.8104515918045	99.52	0.43139	99.563	99.294	99.725	0.042831					76	28	4	0	0	0	0.083504	2	25234	25192;25234		36.044	16.787	1	762300			22091	6322	14547	14696	30041;30042	30042					0.049758078623654
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant;PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.260009765625	2	547.797675	1093.5808	0.55093	0.0003018	0.15899	8.7094E-05	0.70992	0.00038889	547.7974387844768	57.635	0.31017	57.635	57.489	57.799	0					14	10	2	0	0	0	0.24791	1	12627	12627		10.074	1.4806	1	82083			22092	1535	14548	14697	30043	30043					0.03774913620100051
VFQQKTARR	9	Unmodified	_VFQQKTARR_					0	0	0		nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3311157226562	2	567.330539	1132.64652	0.68324	0.00038762	0.3622	0.00020549	1.0454	0.00059311	567.3306714351886	84.433	1.6308	84.433	84.02	85.65	0					258	82	4	0	0	0	0.24021	1	20970	20970		13.906	13.906	1	2767200			22093	3513	14549	14698	30044	30044					0.08550747585650242
VFQQKTARR	9	Unmodified	_VFQQKTARR_					0	0	0		nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	567.330539	1132.64652	0.46346	0.00026294	0.45916	0.0002605	0.92262	0.00052343	567.3307226111552	84.523	1.794	84.546	83.867	85.661	0.023125	0.056101	4.4923E-05	NaN	13.906	243	91	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3075600			22094	3513	14549	14698							0.08550747585650242
VFQRLRDW	8	Unmodified	_VFQRLRDW_					0	0	0		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.763427734375	2	560.306532	1118.59851	0.62961	0.00035278	-0.28895	-0.0001619	0.34067	0.00019088	560.3064224885893	98.389	0.32252	98.389	98.189	98.512	0					23	15	2	0	0	0	0.3576	1	25090	25090		2.8892	0.58649	1	87371			22095	2445	14550	14699	30045	30045					0.04395673665612776
VFQRLRDW	8	Unmodified	_VFQRLRDW_					0	0	0		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	560.306532	1118.59851	0.67992	0.00038096	-0.24053	-0.00013477	0.43939	0.00024619	560.3061789754512	98.346	0.28584	98.388	98.145	98.431	0.041939	-0.0003785	3.0347E-05	NaN	2.8892	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62422			22096	2445	14550	14699							0.04395673665612776
VFRAPRAPSG	10	Unmodified	_VFRAPRAPSG_					0	0	0			REV__ENST00000562410.5_1_16:75579850-75589867:-|nuORF	REV__ENST00000562410.5_1_16:75579850-75589867:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7540283203125	2	529.298707	1056.58286	0.45188	0.00023918	1.9968	0.0010569	2.4487	0.0012961	529.299665628083	55.688	0.5364	55.688	55.411	55.948	0					33	18	2	0	0	0	0.31616	1	12000	12000		10.074	2.1638	1	124020	+		22097	12488	14551	14700	30046	30046					0.05683387148565089
VFRDDRIHY	9	Unmodified	_VFRDDRIHY_					0	0	0			REV__ENSG00000005469|ENST00000331536|CROT	REV__ENSG00000005469|ENST00000331536|CROT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.56414794921875	3	407.543878	1219.60981	0.25486	0.00010387	4.4319	0.0018062	4.6868	0.0019101	407.5457630707231	34.697	0.58317	34.697	34.478	35.062	0					29	21	2	0	0	0	0.25875	1	5686	5686		0.96228	0	1	18653	+		22098	7937	14552	14701	30047	30047					0.008784509690940467
VFRKKKRDWKL	11	Unmodified	_VFRKKKRDWKL_					0	0	0			REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2314758300781	3	501.980539	1502.91979	0.61631	0.00030938	-1.2953	-0.00065022	-0.679	-0.00034084	501.9798529615405	66.455	0.41133	66.521	66.339	66.75	0.066803					32	16	3	0	0	0	0.31102	1	15145	15145		0.073264	0	1	134830	+		22099	8926	14553	14702	30048	30048					0.18844350975882662
VFRKKKRDWKL	11	Unmodified	_VFRKKKRDWKL_					0	0	0			REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	501.980539	1502.91979	0.75866	0.00038083	-1.7312	-0.00086905	-0.97258	-0.00048821	501.97968216306026	66.499	0.44023	66.499	66.248	66.688	0	-0.011061	-0.00031728	NaN	0.073264	34	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201560	+		22100	8926	14553	14702							0.18844350975882662
VFRLQFDEF	9	Unmodified	_VFRLQFDEF_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.8070068359375	2	600.806031	1199.59751	0.11259	6.7648E-05	1.2659	0.00076054	1.3785	0.00082818	600.806882340616	73.083	1.5385	73.083	72.692	74.23	0					81	55	2	0	0	0	6.155E-09	1	17311	17311		165.72	123.76	1	4262300			22101	789	14554	14703	30049	30049					0.005694145060488154
VFRNLILLF	9	Unmodified	_VFRNLILLF_					0	0	0			REV__ENST00000444746.6_1_2:152289710-152291989:+|nuORF	REV__ENST00000444746.6_1_2:152289710-152291989:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7279663085938	2	567.855327	1133.6961	0.4912	0.00027893	-0.32391	-0.00018394	0.16729	9.4994E-05	567.8550760145462	80.011	1.0548	80.037	79.799	80.854	0.026436					79	37	3	0	0	0	0.25845	1	19486	19486		2.0598	0	1	724200	+		22102	11896	14555	14704	30050	30050					0.1346006254175336
VFSEENYVP	9	Unmodified	_VFSEENYVP_					0	0	0			REV__PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	REV__PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.8197631835938	2	542.253297	1082.49204	-0.10981	-5.9548E-05	-4.3367	-0.0023516	-4.4466	-0.0024112	542.2510964722004	28.659	0.12049	28.659	28.619	28.739	0					5	4	2	0	0	0	0.259	1	3911	3911		1.6526	0	1	7649.4	+		22103	8420	14556	14705	30051	30051					-0.04590546410236129
VFSEHLIKR	9	Unmodified	_VFSEHLIKR_					0	0	0		nc|ENSG00000106341|O96001-2|PPP1R17;ENSG00000106341|ENST00000342032|PPP1R17	nc|ENSG00000106341|O96001-2|PPP1R17	nc|ENSG00000106341|O96001-2|PPP1R17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.8295288085938	2	564.82984	1127.64513	0.15828	8.9402E-05	-0.020359	-1.1499E-05	0.13792	7.7903E-05	564.8298452028296	35.74	0.23209	35.819	35.711	35.943	0.078827					14	8	2	0	0	0	0.33704	1	5890	5890		1.8442	0	1	19407			22104	7479	14557	14706	30052	30052					0.08641113496901198
VFSEHLIKR	9	Unmodified	_VFSEHLIKR_					0	0	0		nc|ENSG00000106341|O96001-2|PPP1R17;ENSG00000106341|ENST00000342032|PPP1R17	nc|ENSG00000106341|O96001-2|PPP1R17	nc|ENSG00000106341|O96001-2|PPP1R17	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	564.82984	1127.64513	0.11341	6.4056E-05	0.21068	0.000119	0.32409	0.00018305	564.8299527144832	35.913	0.28536	35.913	35.736	36.022	0	0.047388	6.2189E-05	NaN	1.8442	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15477			22105	7479	14557	14706							0.08641113496901198
VFSETDFLF	9	Unmodified	_VFSETDFLF_					0	0	0			REV__ENST00000460265.5_1_5:126171989-126172217:+|nuORF	REV__ENST00000460265.5_1_5:126171989-126172217:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.26806640625	2	552.76604	1103.51753	0.11258	6.2231E-05	-0.77492	-0.00042835	-0.66234	-0.00036612	552.7655435977704	31.447	1.4682	31.52	31.046	32.514	0.073782					160	71	5	0	0	0	0.33356	1	4823	4823		2.3027	0	1	592240	+		22106	11956	14558	14707	30053	30053					-0.030090718878227563
VFSLHEDNHYR	11	Unmodified	_VFSLHEDNHYR_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2274169921875	3	472.893347	1415.65821	0.19575	9.257E-05	-0.26793	-0.0001267	-0.072177	-3.4132E-05	472.8931969139832	74.647	0.45951	74.647	74.501	74.961	0					24	16	2	0	0	0	0.38987	1	17881	17881		6.6235	2.2173	1	100170			22107	3927	14559	14708	30054	30054					-0.03299100181675385
VFSLHEDNHYR	11	Unmodified	_VFSLHEDNHYR_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.54779052734375	3	472.893347	1415.65821	0.12027	5.6877E-05	-0.44488	-0.00021038	-0.32461	-0.0001535	472.8931889272887	74.598	0.39031	74.647	74.482	74.872	0.048538					22	13	2	0	0	0	0.40087	1	17692	17692		4.1166	0	1	85992			22108	3927	14559	14708	30055	30055					-0.03299100181675385
VFSNVSIILF	10	Unmodified	_VFSNVSIILF_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2560424804688	2	569.828975	1137.6434	0.23116	0.00013172	-0.19421	-0.00011066	0.036951	2.1056E-05	569.828790373911	95.742	0.47307	95.742	95.575	96.048	0					64	24	3	0	0	0	0.31595	1	24333	24333		11.495	0	1	656040			22109	2107	14560	14709	30056	30056					0.08008059688290814
VFSNVSIILF	10	Unmodified	_VFSNVSIILF_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.2560424804688	2	569.828975	1137.6434	0.25547	0.00014557	-0.25938	-0.0001478	-0.0039143	-2.2305E-06	569.8287321473545	95.714	0.49075	95.753	95.58	96.071	0.038872					54	24	3	0	0	0	0.29402	1	24170	24170		24.991	5.734	1	537190			22110	2107	14560	14709	30057	30057					0.08008059688290814
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7950439453125	2	524.794935	1047.57532	0.49479	0.00025966	0.13613	7.1439E-05	0.63092	0.0003311	524.7947572573718	69.815	0.7506	69.815	69.574	70.325	0					59	26	4	0	0	0	4.1078E-06	3	16322	16322;16365;16412		154.46	96.992	1	847450			22111	1788	14561	14710	30058;30059;30060	30058					0.05343234828274035
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7951049804688	2	524.794935	1047.57532	0.2414	0.00012669	0.31712	0.00016642	0.55852	0.00029311	524.7948854478301	69.67	0.92655	69.73	69.526	70.453	0.060562					77	36	3	0	0	0	0.00052627	3	16189	16142;16189;16239		131.3	86.891	1	759750			22112	1788	14561	14710	30061;30062;30063	30062					0.05343234828274035
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2767944335938	2	520.276575	1038.5386	0.27718	0.00014421	0.19278	0.0001003	0.46997	0.00024451	520.2765367919716	83.868	0.57372	83.89	83.668	84.241	0.021744					42	20	3	0	0	0	0.0011398	1	20495	20495		96.285	34.927	1	441580			22113	2366	14562	14711	30064	30064					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	520.276575	1038.5386	0.64731	0.00033678	-0.11148	-5.8001E-05	0.53583	0.00027878	520.2763038410197	83.869	0.58388	83.869	83.658	84.242	0	-0.010845	-0.00021428	NaN	96.285	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349720			22114	2366	14562	14711							0.020869382116870838
VFTFAVVPGLK	11	Unmodified	_VFTFAVVPGLK_					0	0	0		tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1	tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1	tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.801025390625	2	589.352617	1176.69068	0.47977	0.00028275	-0.62469	-0.00036816	-0.14492	-8.5407E-05	589.3521323655873	57.972	0.24052	58.041	57.893	58.134	0.068375					13	8	2	0	0	0	0.31001	1	12598	12598		9.3831	0	1	99141			22115	13588	14563	14712	30065	30065					0.10940338959267137
VFTGVVTKL	9	Unmodified	_VFTGVVTKL_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.2971496582031	2	482.29731	962.580068	0.34666	0.00016719	-0.72198	-0.00034821	-0.37532	-0.00018101	482.296928766432	54.227	0.27333	54.227	54.098	54.371	0					15	9	2	0	0	0	0.22861	1	11622	11622		15.248	5.8654	1	73488			22116	641	14564	14713	30066	30066					0.09728118971031563
VFTKSPYQEF	10	Unmodified	_VFTKSPYQEF_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.31103515625	2	623.311146	1244.60774	-0.10863	-6.7713E-05	-0.0082721	-5.1561E-06	-0.11691	-7.2869E-05	623.3111902547607	50.205	0.79584	50.205	49.935	50.731	0					60	28	3	0	0	0	4.2864E-05	3	10380	10339;10380;10426		121.5	98.845	1	316950			22117	3037	14565	14714	30067;30068;30069	30068					-0.0047802255940041505
VFTKSPYQEF	10	Unmodified	_VFTKSPYQEF_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.3106689453125	2	623.311146	1244.60774	0.12232	7.6246E-05	-0.31135	-0.00019407	-0.18902	-0.00011782	623.3110118028405	50.126	0.69045	50.2	49.979	50.669	0.07312					46	23	3	0	0	0	0.0034575	2	10203	10203;10266		92.201	74.758	1	273040			22118	3037	14565	14714	30070;30071	30070					-0.0047802255940041505
VFTLKPLEF	9	Unmodified	_VFTLKPLEF_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3184814453125	2	547.318243	1092.62193	0.09422	5.1568E-05	0.69599	0.00038093	0.79021	0.0004325	547.31851057914	73.383	0.74205	73.383	73.115	73.857	0					79	26	4	0	0	0	0.0011184	3	17424	17424;17467;17525		121.53	71.601	1	2155100			22119	5459	14566	14715	30072;30073;30074	30072					0.07932674659582517
VFTLKPLEF	9	Unmodified	_VFTLKPLEF_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3186645507812	2	547.318243	1092.62193	0.27216	0.00014896	0.55367	0.00030304	0.82583	0.00045199	547.3184965101258	73.276	0.81401	73.328	73.123	73.937	0.052574					79	31	3	0	0	0	0.00041987	4	17247	17239;17247;17291;17345		133.05	74.373	1	1672300			22120	5459	14566	14715	30075;30076;30077;30078	30076					0.07932674659582517
VFTLLMAIYVP	11	Unmodified	_VFTLLMAIYVP_					0	0	0		ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8624877929688	2	633.86196	1265.70937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.07	1	102.07	101.57	102.57	0								0	0	0	0.33192	1	26177	26177		3.5965	0	1				22121	1258	14567	14716	30079	30079					0.08714132538807462
VFTPVVQRI	9	Unmodified	_VFTPVVQRI_					0	0	0		nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2610473632812	2	529.821484	1057.62842	0.48391	0.00025639	-0.35861	-0.00019	0.1253	6.6388E-05	529.8212823150062	53.883	0.38707	53.883	53.711	54.098	0					20	13	2	0	0	0	0.14331	1	11471	11471		36.127	10.728	1	107880			22122	3531	14568	14717	30080	30080					0.10190612610949756
VFTPVVQRI	9	Unmodified	_VFTPVVQRI_					0	0	0		nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	nc|ENSG00000153815|Q8IY22-2|CMIP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	529.821484	1057.62842	0.50969	0.00027005	0.12994	6.8847E-05	0.63963	0.00033889	529.8214544121535	53.855	0.35553	53.92	53.761	54.117	0.065304	0.018416	0.0004048	NaN	36.127	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76932			22123	3531	14568	14717							0.10190612610949756
VFTSNNHIEEL	11	Unmodified	_VFTSNNHIEEL_					0	0	0			REV__GJC1|p.H16N|1|0.39|ENSG00000182963|chr17:44805772-44805772|G/T|missense_variant	REV__GJC1|p.H16N|1|0.39|ENSG00000182963|chr17:44805772-44805772|G/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.8819580078125	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.58	1	65.58	65.08	66.08	0								0	0	0	0.33521	1	15062	15062		2.4348	0	1		+		22124	12658	14569	14718	30081	30081					-0.013567270243584062
VFTTFWEWT	9	Unmodified	_VFTTFWEWT_					0	0	0		nc|ENSG00000214447|A6NFU0|FAM187A	nc|ENSG00000214447|A6NFU0|FAM187A	nc|ENSG00000214447|A6NFU0|FAM187A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.3084716796875	2	608.787307	1215.56006	0.77655	0.00047276	-0.54189	-0.0003299	0.23466	0.00014286	608.7866792746216	98.207	0.38486	98.249	98.077	98.462	0.041931					32	18	2	0	0	0	0.25579	1	24903	24903		4.3292	0	1	80254			22125	7603	14570	14719	30082	30082					-0.039096767595765414
VFTVMGLL	8	Unmodified	_VFTVMGLL_					0	0	0		ENST00000259605.10_1_9:36339556-36339670:-|nuORF	ENST00000259605.10_1_9:36339556-36339670:-|nuORF	ENST00000259605.10_1_9:36339556-36339670:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.53350830078125	2	440.254057	878.493561	0.58362	0.00025694	2.367	0.0010421	2.9507	0.001299	440.25504813541437	63.014	0.83678	63.014	62.605	63.441	0					37	31	2	0	0	0	0.3576	1	14247	14247		6.3541	0	1	183010			22126	5859	14571	14720	30083	30083					0.04945416144846604
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.77630615234375	2	508.776211	1015.53787	0.27362	0.00013921	0.074323	3.7814E-05	0.34795	0.00017703	508.77624493716496	88.85	1.481	88.85	88.402	89.883	0					142	59	4	0	0	0	3.6101E-09	4	22139	22139;22182;22229;22273		170.4	110.01	1	2597400			22127	1899	14572	14721	30084;30085;30086;30087	30084					0.030721435626787752
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7763366699219	2	508.776211	1015.53787	0.28934	0.00014721	0.021765	1.1074E-05	0.31111	0.00015829	508.77621315787087	88.798	1.5425	88.831	88.387	89.93	0.032265					145	61	5	0	0	0	1.4475E-05	4	21958	21958;22006;22055;22105		144.66	97.736	1	2936200			22128	1899	14572	14721	30088;30089;30090;30091	30088					0.030721435626787752
VFVDPNPAL	9	Unmodified	_VFVDPNPAL_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7400207519531	2	486.263468	970.512382	-0.13308	-6.471E-05	-0.022697	-1.1037E-05	-0.15577	-7.5746E-05	486.2633581963714	59.225	0.31406	59.225	59.093	59.408	0					13	11	2	0	0	0	0.24635	1	13155	13155		10.824	1.4765	1	137910	+		22129	10737	14573	14722	30092	30092					0.025946690402406603
VFVDPNPAL	9	Unmodified	_VFVDPNPAL_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7400817871094	2	486.263468	970.512382	-0.020372	-9.9063E-06	0.019453	9.4595E-06	-0.00091893	-4.4684E-07	486.2633164085673	59.106	0.30747	59.177	59.093	59.4	0.070477					17	12	2	0	0	0	0.24635	1	13000	13000		10.824	1.4765	1	67209	+		22130	10737	14573	14722	30093	30093					0.025946690402406603
VFVDSVPEF	9	Unmodified	_VFVDSVPEF_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.7608032226562	2	519.760758	1037.50696	0.3673	0.00019091	0.34173	0.00017762	0.70903	0.00036853	519.7605329421775	76.527	0.64925	76.527	76.298	76.947	0					40	22	2	0	0	0	0.0045547	1	18416	18416		88.904	58.679	1	780340			22131	1407	14574	14723	30094	30094					-0.010290545422321884
VFVDSVPEF	9	Unmodified	_VFVDSVPEF_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.7605590820312	2	519.760758	1037.50696	0.33953	0.00017648	0.34785	0.0001808	0.68738	0.00035728	519.7605028659291	76.434	0.68322	76.473	76.313	76.996	0.03923					46	24	2	0	0	0	0.0097093	1	18213	18213		68.081	39.594	1	632340			22132	1407	14574	14723	30095	30095					-0.010290545422321884
VFVNIQYTL	9	Unmodified	_VFVNIQYTL_					0	0	0		ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C;BACH1-DSCR3|1|fusion	ENST00000480452.5_1_21:38605608-38639601:-|nuORF	ENST00000480452.5_1_21:38605608-38639601:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.8057250976562	2	548.8055	1095.59645	0.4818	0.00026441	0.66309	0.00036391	1.1449	0.00062832	548.8057207886106	79.329	0.54736	79.329	79.015	79.562	0					43	18	3	0	0	0	0.037903	1	19238	19238		66.457	22.598	1	156580			22133	82	14575	14724	30096	30096					0.052472001371370425
VFVNIQYTL	9	Unmodified	_VFVNIQYTL_					0	0	0		ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C;BACH1-DSCR3|1|fusion	ENST00000480452.5_1_21:38605608-38639601:-|nuORF	ENST00000480452.5_1_21:38605608-38639601:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.8058471679688	2	548.8055	1095.59645	0.31163	0.00017103	0.57282	0.00031436	0.88445	0.00048539	548.8057870297422	79.267	0.50158	79.294	79.098	79.599	0.026436					36	17	3	0	0	0	0.0050339	1	19067	19067		82.529	30.9	1	279850			22134	82	14575	14724	30097	30097					0.052472001371370425
VFVNVGNLLEF	11	Unmodified	_VFVNVGNLLEF_					0	0	0		ENSG00000237172|ENST00000449549|B3GNT9	ENSG00000237172|ENST00000449549|B3GNT9	ENSG00000237172|ENST00000449549|B3GNT9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.8439331054688	2	625.842613	1249.67067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.014	1	98.014	97.514	98.514	0								0	0	0	0.32456	1	24942	24942		6.1918	4.3476	1				22135	5633	14576	14725	30098	30098					0.055825432286837895
VFVNVGNLLEF	11	Unmodified	_VFVNVGNLLEF_					0	0	0		ENSG00000237172|ENST00000449549|B3GNT9	ENSG00000237172|ENST00000449549|B3GNT9	ENSG00000237172|ENST00000449549|B3GNT9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.84228515625	2	625.842613	1249.67067	0.52886	0.00033098	-0.33899	-0.00021215	0.18987	0.00011883	625.8422189004789	97.984	0.1411	98.024	97.982	98.123	0.040855					9	8	2	0	0	0	0.35673	1	24786	24786		11.518	7.9214	1	106880			22136	5633	14576	14725	30099	30099					0.055825432286837895
VFVNVGNLLEF	11	Unmodified	_VFVNVGNLLEF_					0	0	0		ENSG00000237172|ENST00000449549|B3GNT9	ENSG00000237172|ENST00000449549|B3GNT9	ENSG00000237172|ENST00000449549|B3GNT9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	625.842613	1249.67067	0.36074	0.00022577	-0.23894	-0.00014954	0.1218	7.6229E-05	625.8420932882913	98.095	0.077377	98.095	98.06	98.137	0	0.035493	0.00010448	NaN	11.518	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70911			22137	5633	14576	14725							0.055825432286837895
VFVQGPAWQF	10	Unmodified	_VFVQGPAWQF_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8035888671875	2	589.803291	1177.59203	0.88633	0.00052276	-1.3614	-0.00080293	-0.47502	-0.00028017	589.8029330491427	81.684	0.49265	81.684	81.461	81.954	0					33	16	3	0	0	0	0.11267	1	19955	19955		43.772	22.235	1	146340			22138	2665	14577	14726	30100	30100					0.010337357142361725
VFVQGPAWQF	10	Unmodified	_VFVQGPAWQF_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	589.803291	1177.59203	0.60751	0.00035831	0.03549	2.0932E-05	0.643	0.00037924	589.8032335021383	81.662	0.41533	81.684	81.523	81.938	0.021866	0.00019192	0.00020442	NaN	43.772	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172060			22139	2665	14577	14726							0.010337357142361725
VFVTPEWEN	9	Unmodified	_VFVTPEWEN_					0	0	0			REV__ENST00000584432.5_1_17:21114503-21116785:-|nuORF	REV__ENST00000584432.5_1_17:21114503-21116785:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7678833007812	2	560.769114	1119.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.05	1	105.05	104.55	105.55	0								0	0	0	0.28527	1	27048	27048		2.0598	0.40713	1		+		22140	12557	14578	14727	30101	30101					-0.0313055365627406
VFVVDSAAF	9	Unmodified	_VFVVDSAAF_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.7507019042969	2	477.750193	953.485833	-0.1518	-7.2521E-05	0.3797	0.0001814	0.22791	0.00010888	477.75049355573816	73.677	0.4343	73.677	73.515	73.949	0					21	14	2	0	0	0	0.092418	1	17542	17542		34.102	18.255	1	85255			22141	3229	14579	14728	30102	30102					0.007229801489074816
VFVVDSAAF	9	Unmodified	_VFVVDSAAF_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.75079345703125	2	477.750193	953.485833	0.03764	1.7983E-05	0.27755	0.0001326	0.31519	0.00015058	477.7503686412615	73.648	0.34204	73.701	73.51	73.852	0.052567					18	12	2	0	0	0	0.024893	1	17361	17361		54.774	27.89	1	78270			22142	3229	14579	14728	30103	30103					0.007229801489074816
VFWDKWEAQ	9	Unmodified	_VFWDKWEAQ_					0	0	0			REV__nc|ENSG00000105875|A4D1P6-3|WDR91	REV__nc|ENSG00000105875|A4D1P6-3|WDR91	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.2679443359375	2	604.790381	1207.56621	-0.17606	-0.00010648	-4.3095	-0.0026063	-4.4855	-0.0027128	604.7870169940937	42.476	0.40598	42.476	42.22	42.626	0					19	13	2	0	0	0	0.259	1	8019	8019		1.6526	0.17072	1	21324	+		22143	8558	14580	14729	30104	30104					-0.029271585280639556
VFWGNWAG	8	Unmodified	_VFWGNWAG_					0	0	0		ENST00000599181.1_1_19:50865290-50865359:-|nuORF	ENST00000599181.1_1_19:50865290-50865359:-|nuORF	ENST00000599181.1_1_19:50865290-50865359:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.7232971191406	2	468.72177	935.428987	0.21296	9.9819E-05	3.0004	0.0014064	3.2134	0.0015062	468.72325672453644	101.4	0.20687	101.45	101.4	101.61	0.042656					18	13	2	0	0	0	0.54081	1	25821	25821		0.79363	0	1	50817			22144	7291	14581	14730	30105	30105					-0.04131022616957125
VFWIGLLF	8	Unmodified	_VFWIGLLF_					0	0	0		ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.1912536621094	2	497.791664	993.568775	0.25312	0.000126	-3.6564	-0.0018201	-3.4033	-0.0016941	497.7895950797316	51.679	0.18108	51.679	51.562	51.743	0					7	5	2	0	0	0	0.35759	1	10823	10823		11.114	4.7604	1	30517			22145	73	14582	14731	30106	30106					0.07173341667555633
VFWVCFII	8	Unmodified	_VFWVCFII_					0	0	0			REV__nc|ENSG00000172940|Q9Y226-2|SLC22A13	REV__nc|ENSG00000172940|Q9Y226-2|SLC22A13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7780151367188	2	513.777699	1025.54085	0.4371	0.00022457	0.39809	0.00020453	0.83519	0.0004291	513.7779127421559	96.591	0.51218	96.591	96.359	96.872	0					31	22	2	0	0	0	0.46808	1	24522	24522		17.087	0.14425	1	307860	+		22146	10303	14583	14732	30107	30107					0.02909695415837632
VFYAPQTYA	9	Unmodified	_VFYAPQTYA_					0	0	0		A1CF|p.R418Kfs*7|1|0.16|ENSG00000148584|chr10:50813951-50813952|-/T|frameshift_variant;nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF	A1CF|p.R418Kfs*7|1|0.16|ENSG00000148584|chr10:50813951-50813952|-/T|frameshift_variant	A1CF|p.R418Kfs*7|1|0.16|ENSG00000148584|chr10:50813951-50813952|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2608642578125	2	530.260925	1058.5073	0.46908	0.00024874	0.06848	3.6312E-05	0.53756	0.00028505	530.260885151812	53.381	1.5205	53.446	52.825	54.346	0.06543					158	66	3	0	0	0	0.26684	1	11136	11136		10.824	0	1	780180			22147	1	14584	14733	30108	30108					-0.019616348223962632
VFYKPREFGHK	11	Unmodified	_VFYKPREFGHK_					0	0	0			REV__ENST00000565724.5_1_16:74372556-74376136:-|nuORF	REV__ENST00000565724.5_1_16:74372556-74376136:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.32867431640625	3	469.922578	1406.7459	-0.32063	-0.00015067	-2.8528	-0.0013406	-3.1735	-0.0014913	469.921052492815	31.511	0.15877	31.585	31.475	31.634	0.073782					10	7	2	0	0	0	0.31101	1	4606	4606		0.45452	0.046251	1	16493	+		22148	8311	14585	14734	30109	30109					0.058801454797276165
VFYNGSRQ	8	Unmodified	_VFYNGSRQ_					0	0	0			REV__ENSG00000197106|ENST00000331565|SLC6A17	REV__ENSG00000197106|ENST00000331565|SLC6A17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.72222900390625	2	485.740691	969.466829	-0.069348	-3.3685E-05	0.27214	0.00013219	0.2028	9.8506E-05	485.7406068263491	35.578	0.36257	35.657	35.513	35.876	0.078831					23	12	3	0	0	0	0.3576	1	5806	5806		0.79363	0	1	40171	+		22149	10842	14586	14735	30110	30110					-0.019125564221326385
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.2924194335938	2	612.292225	1222.5699	0.59115	0.00036196	0.041876	2.564E-05	0.63303	0.0003876	612.2919536232528	81.612	1.2486	81.612	81.347	82.595	0					101	43	4	0	0	0	0.0043406	2	19975	19931;19975		97.075	78.94	1	1957100			22150	1354	14587	14736	30111;30112	30112					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.2924194335938	2	612.292225	1222.5699	0.32108	0.00019659	0.3725	0.00022808	0.69357	0.00042467	612.2921416515112	81.594	1.0622	81.616	81.392	82.454	0.021866					98	38	4	0	0	0	0.0043406	3	19809	19761;19809;19854		97.075	76.66	1	2106600			22151	1354	14587	14736	30113;30114;30115	30114					-0.032484887542068464
VFYVEYVE	8	Unmodified	_VFYVEYVE_					0	0	0			REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2548217773438	2	524.255308	1046.49606	0.50646	0.00026551	-0.58114	-0.00030466	-0.074679	-3.9151E-05	524.2547938467854	70.474	0.35696	70.474	70.351	70.708	0					18	12	2	0	0	0	0.52502	1	16597	16597		9.3474	0	1	84616	+		22152	7884	14588	14737	30116	30116					-0.025324569165377397
VFYYGYPSF	9	Unmodified	_VFYYGYPSF_					0	0	0			REV__ENSG00000148835|ENST00000369839|TAF5	REV__ENSG00000148835|ENST00000369839|TAF5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.8265380859375	2	571.7633	1141.51205	0.16313	9.3271E-05	-3.0257	-0.00173	-2.8625	-0.0016367	571.7616906105814	49.587	0.39931	49.587	49.422	49.822	0					17	13	2	0	0	0	0.24263	1	10208	10208		12.532	0	1	62270	+		22153	9598	14589	14738	30117	30117					-0.053047506796247035
VFYYQILN	8	Unmodified	_VFYYQILN_					0	0	0		YWHAB|p.E182Q|1|0.05|ENSG00000166913|chr20:44905087-44905087|G/C|missense_variant	YWHAB|p.E182Q|1|0.05|ENSG00000166913|chr20:44905087-44905087|G/C|missense_variant	YWHAB|p.E182Q|1|0.05|ENSG00000166913|chr20:44905087-44905087|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7508544921875	2	530.279118	1058.54368	0.58307	0.00030919	-0.45941	-0.00024361	0.12366	6.5576E-05	530.278770543834	93.023	0.85745	93.06	92.748	93.606	0.037369					65	35	2	0	0	0	0.3576	1	23179	23179		2.3027	0	1	426620			22154	13770	14590	14739	30118	30118					0.01675242074338712
VFYYQILN	8	Unmodified	_VFYYQILN_					0	0	0		YWHAB|p.E182Q|1|0.05|ENSG00000166913|chr20:44905087-44905087|G/C|missense_variant	YWHAB|p.E182Q|1|0.05|ENSG00000166913|chr20:44905087-44905087|G/C|missense_variant	YWHAB|p.E182Q|1|0.05|ENSG00000166913|chr20:44905087-44905087|G/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	530.279118	1058.54368	0.60173	0.00031909	-0.46629	-0.00024726	0.13544	7.1822E-05	530.2787969084945	93.105	1.0024	93.105	92.767	93.77	0	0.022212	-2.6494E-06	NaN	2.3027	62	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481770			22155	13770	14590	14739							0.01675242074338712
VGAQRGRV	8	Unmodified	_VGAQRGRV_					0	0	0			REV__ENSG00000197561|ENST00000263621|ELANE	REV__ENSG00000197561|ENST00000263621|ELANE	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.7509460449219	2	421.751393	841.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.657	1	71.715	71.215	72.215	0.058578								0	0	0	0.38822	1	16756	16756		2.5775	0	1		+		22156	10863	14591	14740	30119	30119					0.061148733972345326
VGARVSRK	8	Unmodified	_VGARVSRK_					0	0	0			REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF	REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.7745361328125	2	436.774868	871.535184	0.36464	0.00015927	-0.35522	-0.00015515	0.0094217	4.1152E-06	436.7746351015151	85.823	1.0142	85.848	85.549	86.563	0.025169					98	37	4	0	0	0	0.54097	1	21024	21024		0.69038	0	1	2779600	+		22157	12468	14592	14741	30120	30120					0.09427732948370249
VGATGPEVTL	10	Unmodified	_VGATGPEVTL_					0	0	0		nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;ENSG00000204961|ENST00000532602|PCDHA9	nc|ENSG00000204961|Q9Y5H5-2|PCDHA9	nc|ENSG00000204961|Q9Y5H5-2|PCDHA9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2586669921875	2	472.258382	942.502212	-0.0037652	-1.7782E-06	0.12292	5.8049E-05	0.11915	5.6271E-05	472.258346305798	51.181	0.94886	51.251	50.883	51.832	0.069874					98	36	4	0	0	0	0.42901	2	10462	10462;10646		8.7454	0	1	915410			22158	5503	14593	14742	30121;30122	30121					0.028660613150123027
VGAWHHSF	8	Unmodified	_VGAWHHSF_					0	0	0		ENST00000599814.5_1_19:46357662-46357740:-|nuORF	ENST00000599814.5_1_19:46357662-46357740:-|nuORF	ENST00000599814.5_1_19:46357662-46357740:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7241516113281	2	470.724844	939.435135	0.096181	4.5275E-05	-1.3251	-0.00062375	-1.2289	-0.00057847	470.724147668308	62.491	0.41431	62.564	62.363	62.777	0.072701					21	13	2	0	0	0	0.49441	1	13971	13971		13.508	1.8676	1	157480			22159	7293	14594	14743	30123	30123					-0.03700504385426484
VGAYILYFF	9	Unmodified	_VGAYILYFF_					0	0	0		ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7929077148438	2	546.791861	1091.56917	0.28377	0.00015516	0.030359	1.66E-05	0.31412	0.00017176	546.7921607244185	102.67	0.2926	102.67	102.52	102.81	0					32	20	2	0	0	0	0.11964	1	26349	26349		28.173	14.665	1	54740			22160	1645;7027	14595	14744	30124	30124					0.027047165967360343
VGAYILYFF	9	Unmodified	_VGAYILYFF_					0	0	0		ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7914428710938	2	546.791861	1091.56917	0.4432	0.00024234	-0.49664	-0.00027156	-0.053445	-2.9223E-05	547.2927543456794	102.66	0.2496	102.7	102.47	102.72	0.040916					22	18	2	0	0	0	0.081567	1	26163	26163		36.466	22.958	1	71340			22161	1645;7027	14595	14744	30125	30125					0.027047165967360343
VGCGGGAP	8	Unmodified	_VGCGGGAP_					0	0	0		ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.768310546875	1	617.271172	616.263896	-0.53982	-0.00033322	-2.3098	-0.0014258	-2.8497	-0.001759	617.2699134539071	39.674	0.51542	39.674	39.496	40.012	0					23	17	2	0	0	0	0.3576	1	7256	7256		0	0	1	20915			22162	6370	14596	14745	30126	30126					-0.05958577748276639
VGDGDFPH	8	Unmodified	_VGDGDFPH_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5751037597656	2	422.185217	842.355882	-0.14743	-6.2245E-05	0.35483	0.00014981	0.2074	8.7561E-05	422.18524103658183	40.731	0.34438	40.731	40.593	40.938	0					14	11	2	0	0	0	0.3576	1	7529	7529		0.69038	0	1	16793			22163	2811	14597	14746	30127	30127					-0.0716019613022354
VGEFEFRSL	9	Unmodified	_VGEFEFRSL_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2770385742188	2	542.277106	1082.53966	0.4912	0.00026637	-0.19681	-0.00010672	0.2944	0.00015964	542.2768758228882	63.082	0.85501	63.155	62.906	63.761	0.072701					78	34	3	0	0	0	0.11547	1	14220	14220		29.082	0	1	628520	+		22164	9639	14598	14747	30128	30128					0.0016915258061089844
VGEFEFRSL	9	Unmodified	_VGEFEFRSL_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	542.277106	1082.53966	0.49963	0.00027094	-0.23657	-0.00012829	0.26306	0.00014265	542.2768987724155	63.227	0.98699	63.227	62.883	63.87	0	0.036317	-2.7383E-05	NaN	29.082	87	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688290	+		22165	9639	14598	14747							0.0016915258061089844
VGEFEFRSL	9	Unmodified	_VGEFEFRSL_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.277106	1082.53966	0.4912	0.00026637	-0.19681	-0.00010672	0.2944	0.00015964	542.2768758228882	63.082	0.85501	63.155	62.906	63.761	0.072701	-0.036317	1.5744E-05	NaN	29.082	78	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628520	+		22166	9639	14598	14747							0.0016915258061089844
VGEPKTDNR	9	Unmodified	_VGEPKTDNR_					0	0	0			REV__ENST00000513024.5_1_4:41607927-41607993:+|nuORF	REV__ENST00000513024.5_1_4:41607927-41607993:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7808532714844	2	508.261988	1014.50942	-0.035747	-1.8169E-05	-0.26658	-0.00013549	-0.30232	-0.00015366	508.2616447445808	23.75	0.30784	23.85	23.667	23.975	0.099739					50	28	2	0	0	0	0.3354	1	2381	2381		2.0598	0	1	30017	+		22167	12263	14599	14748	30129	30129					0.0027479391541191944
VGEVFLALL	9	Unmodified	_VGEVFLALL_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6-2|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6-2|CELSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.79150390625	2	480.791861	959.569169	0.14351	6.8999E-05	-0.22584	-0.00010858	-0.082328	-3.9583E-05	480.79172036931357	100.52	0.39639	100.52	100.33	100.73	0					35	23	2	0	0	0	0.25979	2	25694	25694;25741		11.64	0	1	94986	+		22168	8193	14600	14749	30130;30131	30130					0.08776716596742062
VGFAETVVEL	10	Unmodified	_VGFAETVVEL_					0	0	0		SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2	SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant	SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.27197265625	2	532.28714	1062.55973	0.51534	0.00027431	-1.2962	-0.00068995	-0.78086	-0.00041564	532.2863092289907	74.941	0.62857	74.985	74.812	75.44	0.044037					37	22	3	0	0	0	0.25276	1	17752	17752		27.629	0	1	765250			22169	668	14601	14750	30132	30132					0.030949035205594555
VGFVSGLK	8	Unmodified	_VGFVSGLK_					0	0	0		nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.24|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF	nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.7420654296875	2	403.742171	805.469789	-0.078788	-3.181E-05	-0.011936	-4.819E-06	-0.090724	-3.6629E-05	403.7420649723683	21.415	0.875	21.415	21.232	22.107	0					165	85	3	0	0	0	0.45077	1	1853	1853		19.439	0	1	177880			22170	742	14602	14751	30133	30133					0.05927318702663342
VGGAGGLA	8	Unmodified	_VGGAGGLA_					0	0	0			REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.288818359375	1	601.330402	600.323125	0.43119	0.00025929	-0.44406	-0.00026703	-0.012869	-7.7384E-06	601.3340227452048	91.736	0.13589	91.772	91.694	91.829	0.03653					6	4	2	0	0	0	0.3576	1	22868	22868		0	0	1	30899	+		22171	12171	14603	14752	30134	30134					0.006976415375561373
VGGAVKSRR	9	Unmodified	_VGGAVKSRR_					0	0	0			REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF	REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.2862243652344	2	465.2856	928.556647	0.38014	0.00017688	-0.1129	-5.2531E-05	0.26724	0.00012434	465.285450550884	84.832	0.3549	84.855	84.708	85.063	0.023132					25	15	2	0	0	0	0.33356	1	20754	20754		2.3027	0	1	279520	+		22172	11518	14604	14753	30135	30135					0.08951117977085232
VGGDIHALL	9	Unmodified	_VGGDIHALL_					0	0	0			REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	447.7557678222656	2	447.75581	893.497067	0.3356	0.00015027	-0.43585	-0.00019515	-0.10025	-4.4888E-05	447.7556259705733	55.36	0.46201	55.425	55.242	55.704	0.065128					26	17	2	0	0	0	0.25979	1	11812	11812		11.64	0	1	116670	+		22173	13247	14605	14754	30136	30136					0.04605802243031576
VGGDIHALL	9	Unmodified	_VGGDIHALL_					0	0	0			REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	447.75581	893.497067	0.6314	0.00028271	-0.95942	-0.00042959	-0.32803	-0.00014688	447.75532843721385	55.445	0.58391	55.445	55.166	55.749	0	0.0098394	-0.00015084	NaN	11.64	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138280	+		22174	13247	14605	14754							0.04605802243031576
VGGDIHALL	9	Unmodified	_VGGDIHALL_					0	0	0			REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	447.75581	893.497067	0.3356	0.00015027	-0.43585	-0.00019515	-0.10025	-4.4888E-05	447.7556259705733	55.36	0.46201	55.425	55.242	55.704	0.065128	-0.0098394	0.00031802	NaN	11.64	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116670	+		22175	13247	14605	14754							0.04605802243031576
VGGENTNF	8	Unmodified	_VGGENTNF_					0	0	0		ENST00000515144.5_1_5:14401112-14401157:+|nuORF	ENST00000515144.5_1_5:14401112-14401157:+|nuORF	ENST00000515144.5_1_5:14401112-14401157:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.5557861328125	2	419.1905	836.366446	-0.11947	-5.0081E-05	-0.15295	-6.4115E-05	-0.27242	-0.0001142	419.1903370902017	45.378	0.26979	45.466	45.37	45.64	0.08754					13	9	2	0	0	0	0.35759	1	8798	8798		11.64	0.81637	1	43368			22176	6934	14606	14755	30137	30137					-0.058282134757973836
VGGLFFILTVR	11	Unmodified	_VGGLFFILTVR_					0	0	0			REV__ENSG00000139719|ENST00000267199|VPS33A	REV__ENSG00000139719|ENST00000267199|VPS33A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3560791015625	2	611.371341	1220.72813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.339	1	86.364	85.864	86.864	0.025169								0	0	0	0.33792	1	21233	21233		1.4819	0	1		+		22177	9351	14607	14756	30138	30138					0.12659430224880452
VGGLRPRPRA	10	Unmodified	_VGGLRPRPRA_					0	0	0			REV__SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|26|2|sense	REV__SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|26|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3345947265625	2	539.833249	1077.65194	0.25243	0.00013627	-1.0227	-0.00055208	-0.77027	-0.00041582	539.8325430619564	89.257	0.8772	89.257	89.03	89.908	0					76	34	3	0	0	0	0.46554	1	22369	22369		1.8442	1.8442	1	305110	+		22178	13019	14608	14757	30139	30139					0.1162247116810704
VGGLSVLY	8	Unmodified	_VGGLSVLY_					0	0	0		ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENST00000557925.1_1_19:8315741-8320784:+|nuORF;ENSG00000090661|ENST00000251363|CERS4	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1881408691406	2	404.234179	806.453805	0.22282	9.0073E-05	-3.317	-0.0013409	-3.0942	-0.0012508	404.2328307204526	77.332	0.42915	77.367	77.311	77.74	0.034485					27	16	2	0	0	0	0.3576	1	18507	18507		0.79363	0	1	333330			22179	1046	14609	14758	30140	30140					0.042836124657469554
VGGLSVLY	8	Unmodified	_VGGLSVLY_					0	0	0		ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENST00000557925.1_1_19:8315741-8320784:+|nuORF;ENSG00000090661|ENST00000251363|CERS4	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	404.234179	806.453805	0.50865	0.00020562	-3.6218	-0.0014641	-3.1132	-0.0012585	404.2327203999155	77.45	0.36414	77.45	77.32	77.685	0	0.041376	-5.4348E-05	NaN	0.79363	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183140			22180	1046	14609	14758							0.042836124657469554
VGGRSGKF	8	Unmodified	_VGGRSGKF_					0	0	0		ENST00000156084.8_1_X:48779915-48780236:-|nuORF	ENST00000156084.8_1_X:48779915-48780236:-|nuORF	ENST00000156084.8_1_X:48779915-48780236:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.21539306640625	2	404.22722	806.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.724	1	60.797	60.297	61.297	0.073421								0	0	0	0.38822	1	13441	13441		9.3474	3.587	1				22181	5779	14610	14759	30141	30141					0.028923797573384036
VGHMYEYI	8	Unmodified	_VGHMYEYI_					0	0	0		SLITRK3|p.V739M|1|0.29|ENSG00000121871|chr3:165188616-165188616|C/T|missense_variant	SLITRK3|p.V739M|1|0.29|ENSG00000121871|chr3:165188616-165188616|C/T|missense_variant	SLITRK3|p.V739M|1|0.29|ENSG00000121871|chr3:165188616-165188616|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.23431396484375	2	506.233853	1010.45315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.66	1	54.725	54.225	55.225	0.065128								0	0	0	0.38822	1	11597	11597		8.5933	0	1				22182	13373	14611	14760	30142	30142					-0.0516555024560148
VGHSRAGR	8	Unmodified	_VGHSRAGR_					0	0	0		ENST00000369632.6_2_1:113245697-113245727:-|nuORF	ENST00000369632.6_2_1:113245697-113245727:-|nuORF	ENST00000369632.6_2_1:113245697-113245727:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.55572509765625	2	420.233368	838.452182	-0.034137	-1.4346E-05	3.3937	0.0014261	3.3596	0.0014118	420.2346568654258	45.171	0.33355	45.171	44.994	45.328	0					16	11	2	0	0	0	0.3576	1	8829	8829		5.2307	0.47466	1	24356			22183	6197	14612	14761	30143	30143					0.026494162203675842
VGLCWGWG	8	Unmodified	_VGLCWGWG_					0	0	0		ENST00000405303.6_1_4:16163806-16163944:-|nuORF	ENST00000405303.6_1_4:16163806-16163944:-|nuORF	ENST00000405303.6_1_4:16163806-16163944:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.6044006347656	2	439.204899	876.395244	0.55912	0.00024557	-0.60429	-0.00026541	-0.045169	-1.9838E-05	439.2045416628153	57.308	0.9614	57.308	56.974	57.935	0					55	34	2	0	0	0	0.3576	1	12674	12674		6.3541	6.3541	1	103400			22184	6374	14613	14762	30144	30144					-0.04789767380361809
VGLDPSPD	8	Unmodified	_VGLDPSPD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.1940002441406	2	400.195251	798.375948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.638	1	79.664	79.164	80.164	0.026436								0	0	0	0.38822	1	19193	19193		9.3474	0	1				22185	4777	14614	14763	30145	30145					-0.03130445190288356
VGNGFRGCMD	10	Unmodified	_VGNGFRGCMD_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2229614257812	2	528.223494	1054.43243	-0.13208	-6.9766E-05	-0.33029	-0.00017447	-0.46237	-0.00024423	528.2231855937492	30.283	0.3377	30.283	30.142	30.48	0					32	17	3	0	0	0	0.45794	1	4377	4377		3.2813	0.28607	1	32907			22186	937	14615	14764	30146	30146					-0.09260463896907822
VGNGPEGPGL	10	Unmodified	_VGNGPEGPGL_					0	0	0		nc|ENSG00000177602|Q8TF76-2|HASPIN;ENSG00000177602|ENST00000325418|HASPIN	nc|ENSG00000177602|Q8TF76-2|HASPIN	nc|ENSG00000177602|Q8TF76-2|HASPIN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.2190856933594	2	448.727249	895.439946	0.23835	0.00010696	-0.85795	-0.00038499	-0.6196	-0.00027803	448.7269300180112	38.452	0.78147	38.539	38.236	39.017	0.08688					44	28	2	0	0	0	0.43214	1	6705	6705		8.1555	0.8663	1	59251			22187	4708	14616	14765	30147	30147					-0.011956650333331709
VGNGPEGPGL	10	Unmodified	_VGNGPEGPGL_					0	0	0		nc|ENSG00000177602|Q8TF76-2|HASPIN;ENSG00000177602|ENST00000325418|HASPIN	nc|ENSG00000177602|Q8TF76-2|HASPIN	nc|ENSG00000177602|Q8TF76-2|HASPIN	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	448.727249	895.439946	0.40649	0.0001824	-1.0002	-0.00044883	-0.59374	-0.00026643	448.72686443299267	38.593	0.8341	38.593	38.274	39.108	0	0.027333	-6.1541E-05	NaN	8.1555	66	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51611			22188	4708	14616	14765							-0.011956650333331709
VGPRVRGH	8	Unmodified	_VGPRVRGH_					0	0	0			REV__ENST00000603175.1_1_2:74730086-74730338:+|nuORF	REV__ENST00000603175.1_1_2:74730086-74730338:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.2487487792969	2	439.259385	876.504218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.019	1	53.019	52.519	53.519	0								0	0	0	0.38822	1	11231	11231		0.79363	0	1		+		22189	12631	14617	14766	30148	30148					0.06102579634136873
VGQAGARR	8	Unmodified	_VGQAGARR_					0	0	0		ENSG00000121236|ENST00000380097|TRIM6	ENSG00000121236|ENST00000380097|TRIM6	ENSG00000121236|ENST00000380097|TRIM6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.5573425292969	2	407.735743	813.456933	0.07782	3.173E-05	3.0562	0.0012461	3.134	0.0012779	407.73734032368355	40.058	0.14232	40.058	39.954	40.096	0					7	4	2	0	0	0	0.3576	1	7284	7284		2.5775	0	1	7646.3			22190	2148	14618	14767	30149	30149					0.04274300363124439
VGRWETER	8	Unmodified	_VGRWETER_					0	0	0		ENST00000416395.5_1_2:70257529-70257601:-|nuORF	ENST00000416395.5_1_2:70257529-70257601:-|nuORF	ENST00000416395.5_1_2:70257529-70257601:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7637939453125	2	516.764697	1031.51484	0.095121	4.9155E-05	-1.3012	-0.0006724	-1.2061	-0.00062325	516.7637762174979	21.353	0.34657	21.455	21.337	21.684	0.10178					83	34	3	0	0	0	0.50159	1	1727	1727		12.532	0	1	67120			22191	6425	14619	14768	30150	30150					0.00034517497897468274
VGTAYIAL	8	Unmodified	_VGTAYIAL_					0	0	0		tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.56683349609375	2	404.234179	806.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.18	1	63.18	62.68	63.68	0								0	0	0	0.38822	1	14329	14329		5.7604	0	1				22192	13682	14620	14769	30151	30151					0.04283612465735587
VGTYIIDLLTF	11	Unmodified	_VGTYIIDLLTF_					0	0	0		ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8539428710938	2	627.852647	1253.69074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.19	1	107.19	106.69	107.69	0								0	0	0	0.32823	1	27657	27657		4.897	0	1				22193	3271	14621	14770	30152	30152					0.07404294168622982
VGTYIIDLLTF	11	Unmodified	_VGTYIIDLLTF_					0	0	0		ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8518676757812	2	627.852647	1253.69074	0.29879	0.00018759	-0.90653	-0.00056917	-0.60774	-0.00038157	627.852151716407	107.17	0.04837	107.2	107.17	107.22	0.025711					8	5	2	0	0	0	0.36299	1	27455	27455		10.8	3.1906	1	33018			22194	3271	14621	14770	30153	30153					0.07404294168622982
VGTYIIDLLTF	11	Unmodified	_VGTYIIDLLTF_					0	0	0		ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.8538208007812	2	627.852647	1253.69074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.14	1	107.17	106.67	107.67	0.025711								0	0	0	0.32823	1	27445	27445		4.897	0	1				22195	3271	14621	14770	30154	30154					0.07404294168622982
VGVAPIVVVI	10	Unmodified	_VGVAPIVVVI_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.3234558105469	2	483.323328	964.632104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.048	1	94.048	93.548	94.548	0								0	0	0	0.33341	1	23734	23734		7.9102	0	1				22196	1855	14622	14771	30155	30155					0.1483728238479216
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.7514343261719	2	421.751393	841.488233	-0.018715	-7.8933E-06	0.14847	6.2617E-05	0.12975	5.4723E-05	421.75140175919734	72.37	0.94839	72.426	71.921	72.869	0.055939					51	32	2	0	0	0	0.53817	1	16925	16925		2.5775	0	1	125540	+		22197	11153	14623	14772	30156	30156					0.061148733972345326
VGVARRPD	8	Unmodified	_VGVARRPD_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2509765625	2	435.251226	868.487899	0.26821	0.00011674	-0.35281	-0.00015356	-0.084598	-3.6821E-05	435.2509318002366	74.024	1.9239	74.072	73.437	75.361	0.048538					173	70	3	0	0	0	0.53858	1	17445	17445		2.3027	0	1	602470	+		22198	8602	14624	14773	30157	30157					0.048394536773685104
VGVGGSCCQ	9	Unmodified	_VGVGGSCCQ_					0	0	0		ENST00000589009.5_1_19:10227257-10229639:-|nuORF	ENST00000589009.5_1_19:10227257-10229639:-|nuORF	ENST00000589009.5_1_19:10227257-10229639:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.16790771484375	2	405.167656	808.320759	0.11284	4.5718E-05	-0.35356	-0.00014325	-0.24072	-9.7532E-05	405.16787112073314	105.72	1.1577	105.75	105.4	106.56	0.029739					352	130	5	0	0	0	0.33704	1	27128	27128		1.8442	1.0506	1	3571300			22199	7254	14625	14774	30158	30158					-0.09106898254060525
VGVPTRAR	8	Unmodified	_VGVPTRAR_					0	0	0		ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	428.2614440917969	2	428.261594	854.508634	0.51476	0.00022045	-0.44876	-0.00019219	0.065997	2.8264E-05	428.2613302876571	85.837	1.1303	85.837	85.53	86.66	0					129	44	4	0	0	0	0.53423	3	21205	21205;21248;21288		5.2307	0	1	4330600			22200	6506	14626	14775	30159;30160;30161	30159					0.07556044057025701
VGVPTRAR	8	Unmodified	_VGVPTRAR_					0	0	0		ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	428.2615661621094	2	428.261594	854.508634	0.3463	0.00014831	-0.2746	-0.0001176	0.071703	3.0708E-05	428.2614079110736	85.819	1.0776	85.844	85.529	86.607	0.025169					112	40	4	0	0	0	0.53423	4	21035	21035;21079;21124;21165		5.2307	0	1	4226900			22201	6506	14626	14775	30162;30163;30164;30165	30162					0.07556044057025701
VGWPKVTG	8	Unmodified	_VGWPKVTG_					0	0	0			REV__ENST00000532887.5_1_8:145582492-145582561:+|nuORF	REV__ENST00000532887.5_1_8:145582492-145582561:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.2502746582031	2	422.239796	842.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.27	1	108.27	107.77	108.77	0								0	0	0	0.38822	1	27924	27924		8.5933	0.68312	1		+		22202	12334	14627	14776	30166	30166					0.037504345598904365
VGYLLPPL	8	Unmodified	_VGYLLPPL_					0	0	0			REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.26788330078125	2	436.268022	870.521491	0.31843	0.00013892	-0.42548	-0.00018562	-0.10705	-4.6703E-05	436.2678183560551	101.24	0.31478	101.28	101.23	101.54	0.042656					31	18	3	0	0	0	0.53771	1	25778	25778		2.8892	0	1	112840	+		22203	10141	14628	14777	30167	30167					0.0810506239655524
VGYLLPPL	8	Unmodified	_VGYLLPPL_					0	0	0			REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	436.268022	870.521491	0.49884	0.00021763	-0.39864	-0.00017392	0.10019	4.3712E-05	436.26778004802304	101.36	0.13676	101.36	101.28	101.42	0	0.038399	1.4108E-05	NaN	2.8892	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82727	+		22204	10141	14628	14777							0.0810506239655524
VGYLLPPL	8	Unmodified	_VGYLLPPL_					0	0	0			REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	436.268022	870.521491	0.31843	0.00013892	-0.42548	-0.00018562	-0.10705	-4.6703E-05	436.2678183560551	101.24	0.31478	101.28	101.23	101.54	0.042656	-0.038399	-9.3065E-06	NaN	2.8892	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112840	+		22205	10141	14628	14777							0.0810506239655524
VGYSRVLG	8	Unmodified	_VGYSRVLG_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.7421569824219	2	425.742702	849.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.923	1	71.923	71.423	72.423	0								0	0	0	0.38822	1	16992	16992		8.5933	0.68312	1				22206	3951	14629	14778	30168	30168					0.04009533071587157
VGYWILLQ	8	Unmodified	_VGYWILLQ_					0	0	0			REV__ENST00000453371.2_1_2:236954608-237032763:+|nuORF;REV__nc|ENSG00000133612|Q96P47|AGAP3;REV__ENST00000454844.1_1_10:46187592-46195676:+|nuORF	REV__nc|ENSG00000133612|Q96P47|AGAP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2242736816406	2	496.284203	990.553853	0.69284	0.00034384	-4.3079	-0.002138	-3.6151	-0.0017941	496.2818656624321	70.607	0.25642	70.667	70.577	70.833	0.060562					16	10	2	0	0	0	0.35713	1	16448	16448		14.582	2.0501	1	73191	+		22207	9792;9151;10295	14630	14779	30169	30169					0.05819849799581789
VHALVARK	8	Unmodified	_VHALVARK_					0	0	0			REV__nc|ENSG00000162729|Q969P0-3|IGSF8	REV__nc|ENSG00000162729|Q969P0-3|IGSF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	447.2875061035156	2	447.287611	892.56067	0.078421	3.5077E-05	-0.23738	-0.00010618	-0.15896	-7.1099E-05	447.2873157685641	109.52	0.17641	109.52	109.44	109.61	0					36	14	3	0	0	0	0.53817	1	28180	28180		2.5775	0	1	2464800	+		22208	9902	14631	14780	30170	30170					0.11009207470783622
VHALVARK	8	Unmodified	_VHALVARK_					0	0	0			REV__nc|ENSG00000162729|Q969P0-3|IGSF8	REV__nc|ENSG00000162729|Q969P0-3|IGSF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	447.2873840332031	2	447.287611	892.56067	0.16429	7.3485E-05	-0.49426	-0.00022108	-0.32997	-0.00014759	447.2870788913999	109.52	0.21631	109.54	109.44	109.65	0.019402					54	21	3	0	0	0	0.3576	1	28019	28019		0.79363	0	1	1775400	+		22209	9902	14631	14780	30171	30171					0.11009207470783622
VHALVARK	8	Unmodified	_VHALVARK_					0	0	0			REV__nc|ENSG00000162729|Q969P0-3|IGSF8	REV__nc|ENSG00000162729|Q969P0-3|IGSF8	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	447.287611	892.56067	0.078421	3.5077E-05	-0.23738	-0.00010618	-0.15896	-7.1099E-05	447.2873157685641	109.52	0.17641	109.52	109.44	109.61	0	-0.010335	0.00011854	NaN	0.79363	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2464800	+		22210	9902	14631	14780							0.11009207470783622
VHAQDTPL	8	Unmodified	_VHAQDTPL_					0	0	0			REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF	REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.72967529296875	2	440.729792	879.445031	0.019462	8.5774E-06	0.3052	0.00013451	0.32466	0.00014309	440.7298506723986	30.721	0.56979	30.721	30.55	31.119	0					61	27	3	0	0	0	0.46914	1	4526	4526		16.942	5.302	1	56241	+		22211	12530	14632	14781	30172	30172					0.00048638829287028784
VHAQDTPL	8	Unmodified	_VHAQDTPL_					0	0	0			REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF	REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.72979736328125	2	440.729792	879.445031	-0.20736	-9.1391E-05	0.50901	0.00022433	0.30164	0.00013294	440.72995447589585	30.665	0.56966	30.74	30.58	31.149	0.075403					66	31	3	0	0	0	0.42348	1	4375	4375		23.148	6.2061	1	48098	+		22212	12530	14632	14781	30173	30173					0.00048638829287028784
VHAQDTPL	8	Unmodified	_VHAQDTPL_					0	0	0			REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF	REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	440.729792	879.445031	0.019462	8.5774E-06	0.3052	0.00013451	0.32466	0.00014309	440.7298506723986	30.721	0.56979	30.721	30.55	31.119	0	-0.009525	-9.2269E-05	NaN	23.148	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56241	+		22213	12530	14632	14781							0.00048638829287028784
VHCAPASSAP	10	Unmodified	_VHCAPASSAP_					0	0	0			REV__ENST00000397501.5_1_8:27316022-27316487:+|nuORF	REV__ENST00000397501.5_1_8:27316022-27316487:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.24786376953125	2	470.221277	938.428001	-0.064443	-3.0303E-05	0.27721	0.00013035	0.21277	0.00010005	470.2215215883413	17.578	0.24189	17.661	17.571	17.813	0.083696					45	30	2	0	0	0	0.31783	1	867	867		3.9444	1.0552	1	18953	+		22214	11732	14633	14782	30174	30174					-0.043676050481849416
VHCGWVAV	8	Unmodified	_VHCGWVAV_					0	0	0			REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF	REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.7177734375	2	435.718173	869.421793	-0.11666	-5.0829E-05	-0.41451	-0.00018061	-0.53116	-0.00023144	435.71798597098444	44.452	0.93838	44.54	44.272	45.211	0.08754					68	33	3	0	0	0	0.51202	1	8542	8542		11.114	1.767	1	307790	+		22215	11632	14634	14783	30175	30175					-0.01814078489030635
VHCGWVAV	8	Unmodified	_VHCGWVAV_					0	0	0			REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF	REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	435.718173	869.421793	-0.023532	-1.0253E-05	-0.75804	-0.00033029	-0.78158	-0.00034055	435.71789504512964	44.548	0.82851	44.548	44.298	45.126	0	0.0038719	-0.00017175	NaN	11.114	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304290	+		22216	11632	14634	14783							-0.01814078489030635
VHCGWVAV	8	Unmodified	_VHCGWVAV_					0	0	0			REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF	REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	435.718173	869.421793	-0.11666	-5.0829E-05	-0.41451	-0.00018061	-0.53116	-0.00023144	435.71798597098444	44.452	0.93838	44.54	44.272	45.211	0.08754	-0.0038719	0.00012762	NaN	11.114	68	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307790	+		22217	11632	14634	14783							-0.01814078489030635
VHDNQFFNS	9	Unmodified	_VHDNQFFNS_					0	0	0			REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.246337890625	2	554.246338	1106.47812	0.33081	0.00018335	-0.4079	-0.00022608	-0.077094	-4.2729E-05	554.2461131389766	49.486	1.5424	49.486	49.253	50.795	0					97	54	2	0	0	0	0.23216	1	10193	10193		14.838	14.838	1	1546000	+		22218	12312	14635	14784	30176	30176					-0.07085779118665414
VHDPAILAKD	10	Unmodified	_VHDPAILAKD_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-4|SLC38A9;REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.2783203125	2	539.798206	1077.58186	0.28155	0.00015198	-0.40654	-0.00021945	-0.12499	-6.7472E-05	539.7980435936528	49.256	0.12155	49.333	49.282	49.404	0.076607					7	4	2	0	0	0	0.31783	1	9952	9952		3.9444	0	1	31212	+		22219	10422;12850	14636	14785	30177	30177					0.046171279889904326
VHDWPLKQ	8	Unmodified	_VHDWPLKQ_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.77252197265625	2	511.774534	1021.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.881	1	24.977	24.477	25.477	0.096073								0	0	0	0.38822	1	2687	2687		4.756	1.1595	1		+		22220	12929	14637	14786	30178	30178					0.02460893508657591
VHDWPLKQ	8	Unmodified	_VHDWPLKQ_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7725830078125	2	511.774534	1021.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.034	1	25.13	24.63	25.63	0.096073								0	0	0	0.38822	1	2729	2729		2.0598	0.40713	1		+		22221	12929	14637	14786	30179	30179					0.02460893508657591
VHEDAKVIREF	11	Unmodified	_VHEDAKVIREF_					0	0	0			REV__nc|ENSG00000114302|P13861-2|PRKAR2A	REV__nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	448.2418212890625	3	448.241976	1341.7041	0.25093	0.00011248	-0.35739	-0.0001602	-0.10646	-4.772E-05	448.24171422406386	48.238	0.58836	48.318	48.134	48.722	0.080029					39	19	3	0	0	0	0.3947	1	9649	9649		5.5233	0	1	270250	+		22222	8761	14638	14787	30180	30180					0.04691545000559927
VHEDEVTQIG	10	Unmodified	_VHEDEVTQIG_					0	0	0			REV__nc|ENSG00000159788|O14924-2|RGS12	REV__nc|ENSG00000159788|O14924-2|RGS12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.2307739257812	2	563.772385	1125.53022	0.36454	0.00020552	1.7977	0.0010135	2.1622	0.001219	563.7732076070503	62.406	0.51937	62.406	62.203	62.722	0					27	18	2	0	0	0	0.31456	1	14072	14072		14.838	0.93222	1	168350	+		22223	9835	14639	14788	30181	30181					-0.027526604955710354
VHFPGGLI	8	Unmodified	_VHFPGGLI_					0	0	0			REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6;REV__ENSG00000127412|ENST00000265310|TRPV5	REV__ENSG00000127412|ENST00000265310|TRPV5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	420.2347717285156	2	420.242338	838.470124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.458	1	39.547	39.047	40.047	0.088562								0	0	0	0.38822	1	7004	7004		6.3541	0	1		+		22224	10024;8997	14640	14789	30182	30182					0.044427384225286914
VHFQQELS	8	Unmodified	_VHFQQELS_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2484436035156	2	494.248349	986.482145	0.38378	0.00018968	0.13322	6.5844E-05	0.517	0.00025552	494.2485483055684	37.349	0.47295	37.433	37.299	37.772	0.084476					31	16	3	0	0	0	0.53614	1	6371	6371		3.9444	0	1	42180			22225	2900	14641	14790	30183	30183					-0.011636896249456186
VHGPSHLA	8	Unmodified	_VHGPSHLA_					0	0	0			REV__ENSG00000237038|ENST00000527080|USP17L8	REV__ENSG00000237038|ENST00000527080|USP17L8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.50262451171875	2	409.219395	816.424236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.115	1	86.115	85.615	86.615	0								0	0	0	0.38822	1	21324	21324		0.79363	0	1		+		22226	11025	14642	14791	30184	30184					0.008680932402739927
VHIADVSH	8	Unmodified	_VHIADVSH_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.23028564453125	2	439.229959	876.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.11	1	106.11	105.61	106.61	0								0	0	0	0.38822	1	27352	27352		0.79363	0	1				22227	933	14643	14792	30185	30185					0.0022005854914368683
VHLIQNAII	9	Unmodified	_VHLIQNAII_					0	0	0		ENST00000588003.5_1_19:2097070-2098323:+|nuORF;ENST00000498554.5_1_19:2097388-2099029:+|nuORF;nc|ENSG00000099840|Q1ZYL8-3|IZUMO4;nc|ENSG00000099840|Q1ZYL8-4|IZUMO4;ENST00000591894.5_1_19:2096998-2098450:+|nuORF;ENST00000497445.5_1_19:2096872-2097684:+|nuORF;ENST00000478879.5_1_19:2096872-2098127:+|nuORF;ENST00000590985.2_1_19:2096914-2098127:+|nuORF;nc|ENSG00000099840|Q1ZYL8-2|IZUMO4;ENSG00000099840|ENST00000395301|IZUMO4	ENST00000588003.5_1_19:2097070-2098323:+|nuORF	ENST00000588003.5_1_19:2097070-2098323:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8124084472656	2	510.813659	1019.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.913	1	85.938	85.438	86.438	0.025169								0	0	0	0.25692	1	21105	21105		7.9102	0	1				22228	1138	14644	14793	30186	30186					0.10374326093892705
VHLLKKKLLI	10	Unmodified	_VHLLKKKLLI_					0	0	0		HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant;ENSG00000255398|ENST00000528880|HCAR3	HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant	HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	402.2900390625	3	402.28831	1203.8431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.51	1	109.53	109.03	110.03	0.019402								0	0	0	0.34018	1	28008	28008		0	0	1				22229	5698	14645	14794	30187	30187					0.24933159426700513
VHLLKKKLLI	10	Unmodified	_VHLLKKKLLI_					0	0	0		HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant;ENSG00000255398|ENST00000528880|HCAR3	HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant	HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.9307250976562	2	602.928826	1203.8431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.47	1	111.48	110.98	111.98	0.015678								0	0	0	0.34018	1	28422	28422		0	0	1				22230	5698	14645	14794	30188	30188					0.24933159426700513
VHLSDDLVVF	10	Unmodified	_VHLSDDLVVF_					0	0	0			REV__nc|ENSG00000162066|Q9Y303-3|AMDHD2	REV__nc|ENSG00000162066|Q9Y303-3|AMDHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3257446289062	2	572.305864	1142.59717	0.55072	0.00031518	1.4057	0.00080446	1.9564	0.0011196	572.3065793211744	97.546	0.59879	97.546	97.461	98.06	0					33	29	2	0	0	0	0.43672	1	24924	24924		7.2892	3.3448	1	64244	+		22231	12827	14646	14795	30189	30189					0.03157994786170093
VHMEMAQI	8	Unmodified	_VHMEMAQI_					0	0	0		CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46	CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.7279052734375	2	479.72788	957.441208	-0.47945	-0.00023	1.9548	0.00093778	1.4754	0.00070777	479.7288404276493	42.564	0.48434	42.654	42.431	42.915	0.089764					26	17	2	0	0	0	0.50815	1	7949	7949		11.64	0.81637	1	53937			22232	126	14647	14796	30190	30190					-0.03921490260427163
VHNGVWSA	8	Unmodified	_VHNGVWSA_					0	0	0			REV__nc|ENSG00000179082|Q8NAJ2|LINC02913	REV__nc|ENSG00000179082|Q8NAJ2|LINC02913	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8821716308594	2	435.216852	868.419151	-0.26146	-0.00011379	-0.65745	-0.00028613	-0.91891	-0.00039993	435.2164495191264	27.715	0.23135	27.797	27.645	27.876	0.082132					23	13	3	0	0	0	0.3576	1	3506	3506		2.3027	0	1	15557	+		22233	12854	14648	14797	30191	30191					-0.020322106223488845
VHNGVWSA	8	Unmodified	_VHNGVWSA_					0	0	0			REV__nc|ENSG00000179082|Q8NAJ2|LINC02913	REV__nc|ENSG00000179082|Q8NAJ2|LINC02913	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	435.216852	868.419151	0.003007	1.3087E-06	-0.93846	-0.00040843	-0.93545	-0.00040712	435.2163951316454	27.79	0.12873	27.79	27.748	27.876	0	-0.0035653	-0.00013466	NaN	2.3027	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16263	+		22234	12854	14648	14797							-0.020322106223488845
VHNWEYLGKQ	10	Unmodified	_VHNWEYLGKQ_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.2151794433594	3	425.21565	1272.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.308	1	96.348	95.848	96.848	0.039772								0	0	0	0.33738	1	24266	24266		1.5923	0.48253	1				22235	557	14649	14798	30192	30192					-0.0002868223373297951
VHPGGDTVAI	10	Unmodified	_VHPGGDTVAI_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.25604248046875	2	483.256174	964.497795	-0.1749	-8.4521E-05	-0.046956	-2.2692E-05	-0.22186	-0.00010721	483.2563100687885	35.099	1.945	35.099	34.718	36.663	0					229	73	5	0	0	0	0.38104	1	6023	6023		13.906	0.86358	1	3387500			22236	768	14650	14799	30193	30193					0.01412596892100737
VHPITGGMG	9	Unmodified	_VHPITGGMG_					0	0	0			REV__ENSG00000157214|ENST00000394621|STEAP2	REV__ENSG00000157214|ENST00000394621|STEAP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.2510070800781	2	434.720913	867.427273	0.23931	0.00010403	0.17443	7.5828E-05	0.41374	0.00017986	434.7209656812133	75.084	0.1999	75.128	74.943	75.142	0.044037					10	6	2	0	0	0	0.25051	1	17762	17762		4.3292	3.7277	1	194630	+		22237	9773	14651	14800	30194	30194					-0.011743996972086279
VHQDTYRQIH	10	Unmodified	_VHQDTYRQIH_					0	0	0		TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;ENSG00000054611|ENST00000337137|TBC1D22A;nc|ENSG00000054611|Q8WUA7-2|TBC1D22A	TBC1D22A-GCAT|1|fusion	TBC1D22A-GCAT|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.8852233886719	3	432.886304	1295.63708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.004	1	97.045	96.545	97.545	0.040855								0	0	0	0.33965	1	24481	24481		0.62683	0.12087	1				22238	13425	14652	14801	30195	30195					0.0010893450946696248
VHRRYWRS	8	Unmodified	_VHRRYWRS_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.3148193359375	2	580.315223	1158.61589	-0.012551	-7.2836E-06	-1.1317	-0.00065672	-1.1442	-0.000664	580.3143792276259	32.378	0.31119	32.378	32.215	32.526	0					18	12	2	0	0	0	0.53858	1	4992	4992		2.3027	0.4585	1	23729			22239	1086	14653	14802	30196	30196					0.04293013991264161
VHRVLAGG	8	Unmodified	_VHRVLAGG_					0	0	0		ENST00000480451.1_1_22:17639835-17640015:-|nuORF	ENST00000480451.1_1_22:17639835-17640015:-|nuORF	ENST00000480451.1_1_22:17639835-17640015:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.52569580078125	2	404.743037	807.471521	0.73035	0.0002956	2.1799	0.00088229	2.9102	0.0011779	404.7438301585673	98.832	0.30025	98.832	98.701	99.001	0					28	18	2	0	0	0	0.3576	1	25207	25207		0.69038	0	1	46130			22240	6745	14654	14803	30197	30197					0.06008372511291782
VHTKKTAFST	10	Unmodified	_VHTKKTAFST_					0	0	0		ZNF217|p.G245S|1|0.27|ENSG00000171940|chr20:53582094-53582094|C/T|missense_variant	ZNF217|p.G245S|1|0.27|ENSG00000171940|chr20:53582094-53582094|C/T|missense_variant	ZNF217|p.G245S|1|0.27|ENSG00000171940|chr20:53582094-53582094|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7660522460938	2	560.31148	1118.60841	0.21419	0.00012001	-0.36708	-0.00020568	-0.15289	-8.5667E-05	560.3114720033346	34.592	0.25851	34.668	34.518	34.776	0.076244					16	12	2	0	0	0	0.31691	1	5525	5525		7.2892	0.56607	1	24551			22241	13773	14655	14804	30198	30198					0.05384816880314247
VHTPAQRP	8	Unmodified	_VHTPAQRP_					0	0	0		ENST00000426012.1_1_20:19789888-19790269:+|nuORF	ENST00000426012.1_1_20:19789888-19790269:+|nuORF	ENST00000426012.1_1_20:19789888-19790269:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2510986328125	2	453.251226	904.487899	-0.21436	-9.7157E-05	0.25536	0.00011574	0.040999	1.8583E-05	453.2512819103017	28.529	0.41902	28.611	28.453	28.872	0.082134					43	22	3	0	0	0	0.3576	1	3739	3739		2.0598	0	1	56645			22242	6469	14656	14805	30199	30199					0.031834536773772015
VHTWRQRRQ	9	Unmodified	_VHTWRQRRQ_					0	0	0		ENST00000394799.6_1_3:52720039-52720216:+|nuORF;ENST00000468146.5_1_3:52720039-52723083:+|nuORF	ENST00000394799.6_1_3:52720039-52720216:+|nuORF	ENST00000394799.6_1_3:52720039-52720216:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.5817565917969	3	422.9024	1265.68537	-0.017864	-7.5548E-06	-2.0318	-0.00085923	-2.0496	-0.00086679	422.9014935604638	89.714	0.35463	89.748	89.604	89.959	0.034065					14	13	2	0	0	0	0.25877	1	22273	22273		2.2828	0	1	35198			22243	6329	14657	14806	30200	30200					0.06315472940013933
VHYKTNPH	8	Unmodified	_VHYKTNPH_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.25531005859375	2	498.256508	994.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.199	1	29.277	28.777	29.777	0.078287								0	0	0	0.38822	1	3937	3937		0.79363	0	1		+		22244	10624	14658	14807	30201	30201					0.000994363317886382
VIALAVYMGT	10	Unmodified	_VIALAVYMGT_					0	0	0		ENST00000566953.5_1_16:58704043-58709925:-|nuORF;nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENSG00000103042|ENST00000219320|SLC38A7	ENST00000566953.5_1_16:58704043-58709925:-|nuORF	ENST00000566953.5_1_16:58704043-58709925:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.3234252929688	2	519.288628	1036.5627	0.37791	0.00019625	0.89683	0.00046572	1.2747	0.00066196	519.2890246779056	73.902	0.16828	73.951	73.848	74.016	0.048546					8	5	2	0	0	0	0.31667	1	17433	17433		7.9102	0.62092	1	126560			22245	1345	14659	14808	30202	30202					0.045884553737323586
VIDCSSSQPQF	11	Unmodified	_VIDCSSSQPQF_					0	0	0		ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7926025390625	2	605.774071	1209.53359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.39	1	70.451	69.951	70.951	0.060562								0	0	0	0.31899	1	16371	16371		8.1555	0	1				22246	1602	14660	14809	30203	30203					-0.06279733713222413
VIDEDGGDEYF	11	Unmodified	_VIDEDGGDEYF_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.76123046875	2	629.75914	1257.50373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.58	1	84.58	84.08	85.08	0								0	0	0	0.33281	1	20855	20855		3.2813	0.78282	1		+		22247	8289	14661	14810	30204	30204					-0.11472394177553724
VIDEDGGDEYF	11	Unmodified	_VIDEDGGDEYF_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.7619018554688	2	629.75914	1257.50373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.198	1	85.198	84.698	85.698	0								0	0	0	0.33281	1	21044	21044		3.2813	0.78282	1		+		22248	8289	14661	14810	30205	30205					-0.11472394177553724
VIDEDGGDEYF	11	Unmodified	_VIDEDGGDEYF_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.7615356445312	2	629.75914	1257.50373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.354	1	84.377	83.877	84.877	0.022881								0	0	0	0.33281	1	20628	20628		3.2813	0.54611	1		+		22249	8289	14661	14810	30206	30206					-0.11472394177553724
VIDEDGGDEYF	11	Unmodified	_VIDEDGGDEYF_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.76171875	2	629.75914	1257.50373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.231	1	85.254	84.754	85.754	0.023125								0	0	0	0.33835	1	20896	20896		1.3295	0	1		+		22250	8289	14661	14810	30207	30207					-0.11472394177553724
VIDEPVRL	8	Unmodified	_VIDEPVRL_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7767333984375	2	470.776742	939.538931	0.02333	1.0983E-05	0.37828	0.00017809	0.40161	0.00018907	470.77667640519763	49.66	0.57374	49.66	49.394	49.968	0					42	19	3	0	0	0	0.41706	1	10210	10210		24.021	8.1734	1	216330			22251	3376	14662	14811	30208	30208					0.0667435793156983
VIDEPVRL	8	Unmodified	_VIDEPVRL_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.7763977050781	2	470.776742	939.538931	-0.076773	-3.6143E-05	0.43959	0.00020695	0.36282	0.0001708	470.7767688050609	49.617	0.57546	49.694	49.384	49.959	0.076603					37	20	3	0	0	0	0.4433	1	10059	10059		20.454	4.6064	1	167940			22252	3376	14662	14811	30209	30209					0.0667435793156983
VIDMINFLF	9	Unmodified	_VIDMINFLF_					0	0	0			REV__ENST00000504747.1_10:48738623-48827915:-|nuORF	REV__ENST00000504747.1_10:48738623-48827915:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.817138671875	2	556.296453	1110.57835	0.68347	0.00038021	-1.002	-0.0005574	-0.31852	-0.00017719	556.2961236011091	101.98	0.4386	102.03	101.87	102.31	0.042656					68	36	3	0	0	0	0.24749	1	25943	25943		9.3474	2.9933	1	104990	+		22253	12215	14663	14812	30210	30210					0.02748741890763995
VIEALLLPLF	10	Unmodified	_VIEALLLPLF_					0	0	0			REV__nc|ENSG00000102007|Q04941-2|PLP2	REV__nc|ENSG00000102007|Q04941-2|PLP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.3592529296875	2	564.357368	1126.70018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.655	1	70.655	70.155	71.155	0								0	0	0	0.33861	1	16605	16605		1.8442	0	1		+		22254	12767	14664	14813	30211	30211					0.14190107244803585
VIEDDKDDD	9	Unmodified	_VIEDDKDDD_					0	0	0			REV__ENSG00000155438|ENST00000285814|NIFK	REV__ENSG00000155438|ENST00000285814|NIFK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7031860351562	2	532.224933	1062.43531	0.46849	0.00024934	0.13655	7.2677E-05	0.60505	0.00032202	532.2249748588878	53.78	0.38372	53.78	53.603	53.987	0					22	13	2	0	0	0	0.25579	1	11465	11465		4.3292	0	1	94404	+		22255	9726	14665	14814	30212	30212					-0.09340638757430497
VIEDDKDDD	9	Unmodified	_VIEDDKDDD_					0	0	0			REV__ENSG00000155438|ENST00000285814|NIFK	REV__ENSG00000155438|ENST00000285814|NIFK	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	532.224933	1062.43531	0.58262	0.00031009	0.70895	0.00037732	1.2916	0.00068741	532.2251457734484	53.737	0.34611	53.802	53.627	53.973	0.06543	0.010934	0.00038	NaN	4.3292	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93591	+		22256	9726	14665	14814							-0.09340638757430497
VIEELYQYF	9	Unmodified	_VIEELYQYF_					0	0	0			REV__tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1	REV__tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3013305664062	2	602.300247	1202.58594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.161	1	23.263	22.763	23.763	0.10178								0	0	0	0.28527	1	2216	2216		2.0598	0.40713	1		+		22257	13036	14666	14815	30213	30213					-0.007248273079540013
VIELIQVY	8	Unmodified	_VIELIQVY_					0	0	0			REV__ENSG00000203734|ENST00000541398|ECT2L	REV__ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.3142395019531	2	488.789318	975.564084	0.020088	9.8189E-06	0.44117	0.00021564	0.46126	0.00022546	488.78947787289934	89.778	0.30883	89.812	89.65	89.959	0.034065					19	11	2	0	0	0	0.3576	1	22292	22292		4.756	2.6963	1	83394	+		22258	10931	14667	14816	30214	30214					0.075324127341446
VIFELLNVLFF	11	Unmodified	_VIFELLNVLFF_					0	0	0			REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|1|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|23	REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|1|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|23	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.93231201171875	3	451.93208	1352.77441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.8	1	96.84	96.34	97.34	0.039772								0	0	0	0.34068	1	24418	24418		0.50596	0.051438	1		+		22259	7773	14668	14817	30215	30215					0.11213450336299502
VIFIIILLKGK	11	Unmodified	_VIFIIILLKGK_					0	0	0			REV__ENSG00000198673|ENST00000416284|TAFA2	REV__ENSG00000198673|ENST00000416284|TAFA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.4046630859375	2	628.93886	1255.86317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.063	1	63.063	62.563	63.563	0								0	0	0	0.34212	1	14293	14293		0	0	1		+		22260	10904	14669	14818	30216	30216					0.24546910366620978
VIFLFLLLLL	10	Unmodified	_VIFLFLLLLL_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.4102783203125	2	602.409404	1202.80425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.71	1	115.71	115.21	116.21	0								0	0	0	0.33979	1	29489	29489		0.45834	0	1		+		22261	8236	14670	14819	30217	30217					0.21096434072342163
VIKEHPGLVQR	11	Unmodified	_VIKEHPGLVQR_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45947679-45949381:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.3804931640625	2	638.380229	1274.7459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.792	1	44.792	44.292	45.292	0								0	0	0	0.33939	1	8739	8739		0.96228	0.50394	1				22262	4115	14671	14820	30218	30218					0.11952145479745013
VILFRMRK	8	Unmodified	_VILFRMRK_					0	0	0		ENST00000461221.5_1_17:41245833-41245896:-|nuORF	ENST00000461221.5_1_17:41245833-41245896:-|nuORF	ENST00000461221.5_1_17:41245833-41245896:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.83544921875	2	531.833872	1061.65319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.52	1	101.57	101.07	102.07	0.042656								0	0	0	0.38822	1	25854	25854		0.69038	0	1				22263	6610	14672	14821	30219	30219					0.12482969212669559
VILITSIIF	9	Unmodified	_VILITSIIF_					0	0	0		tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8307189941406	2	509.830986	1017.64742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.54	1	105.54	105.04	106.04	0								0	0	0	0.27427	1	27192	27192		4.3292	0	1				22264	13706	14673	14822	30220	30220					0.13930149181987872
VILIVLPVIVV	11	Unmodified	_VILIVLPVIVV_					0	0	0			REV__ENSG00000158481|ENST00000368170|CD1C	REV__ENSG00000158481|ENST00000368170|CD1C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.9183959960938	2	588.920135	1175.82572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.49	1	115.49	114.99	115.99	0								0	0	0	0.34212	1	29450	29450		0	0	1		+		22265	9807	14674	14823	30221	30221					0.24483819100987603
VILIVRPPF	9	Unmodified	_VILIVRPPF_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7799072265625	2	527.344595	1052.67464	0.17597	9.2797E-05	-0.10979	-5.7896E-05	0.066183	3.4901E-05	527.8461679796089	50.234	0.65625	50.234	50.024	50.68	0					33	23	2	0	0	0	0.25504	1	10425	10425		4.756	2.4533	1	98892			22266	4659	14675	14824	30222	30222					0.15040677513025003
VILIVRPPF	9	Unmodified	_VILIVRPPF_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7799072265625	2	527.344595	1052.67464	0.2189	0.00011544	-0.22304	-0.00011762	-0.0041373	-2.1818E-06	527.344397615847	50.188	0.48136	50.261	50.069	50.551	0.07312					28	16	2	0	0	0	0.2491	1	10273	10273		8.5933	3.8373	1	105390			22267	4659	14675	14824	30223	30223					0.15040677513025003
VILVLLGGV	9	Unmodified	_VILVLLGGV_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.80596923828125	2	441.804771	881.59499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.468	1	66.468	65.968	66.968	0								0	0	0	0.29525	1	15333	15333		0	0	1		+		22268	8257	14676	14825	30224	30224					0.1494561083906092
VIMLLLHI	8	Unmodified	_VIMLLLHI_					0	0	0		ENST00000508878.5_1_5:127359968-127417754:-|nuORF	ENST00000508878.5_1_5:127359968-127417754:-|nuORF	ENST00000508878.5_1_5:127359968-127417754:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7426452636719	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.78	1	115.79	115.29	116.29	0.013092								0	0	0	0.38822	1	29418	29418		0.79363	0	1				22269	6901	14677	14826	30225	30225					0.12141957341236775
VINGRTKAMVA	11	Unmodified	_VINGRTKAMVA_					0	0	0		nc|ENSG00000269858|Q96KS0-2|EGLN2;ENSG00000269858|ENST00000303961|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.3351440429688	2	580.334433	1158.65431	0.52793	0.00030638	0.31936	0.00018533	0.84729	0.00049171	580.334598300521	60.693	1.1417	60.693	60.335	61.477	0					131	40	4	0	0	0	0.38315	1	13763	13763		8.1555	0	1	3292200			22270	5735	14678	14827	30226	30226					0.08133138790913108
VINGRTKAMVA	11	Unmodified	_VINGRTKAMVA_					0	0	0		nc|ENSG00000269858|Q96KS0-2|EGLN2;ENSG00000269858|ENST00000303961|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3348388671875	2	580.334433	1158.65431	0.39842	0.00023122	0.43871	0.0002546	0.83714	0.00048582	580.3346523585764	60.588	1.2055	60.661	60.263	61.469	0.073421					137	42	4	0	0	0	0.38315	1	13600	13600		8.1555	0	1	4168900			22271	5735	14678	14827	30227	30227					0.08133138790913108
VINHPEIIV	9	Unmodified	_VINHPEIIV_					0	0	0		tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.3058471679688	2	517.305667	1032.59678	0.51363	0.0002657	-0.18561	-9.602E-05	0.32801	0.00016968	517.3055161353391	67.519	0.71342	67.519	67.285	67.998	0					78	27	5	0	0	0	0.10833	1	15643	15643		30.637	1.555	1	978330			22272	13477	14679	14828	30228	30228					0.08178619856971636
VINIVKSIF	9	Unmodified	_VINIVKSIF_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.3058471679688	2	516.826235	1031.63792	0.7584	0.00039196	-0.53813	-0.00027812	0.22027	0.00011384	516.8259763763804	67.196	0.45168	67.261	67.101	67.553	0.065071					18	15	2	0	0	0	0.25051	1	15481	15481		7.9102	0	1	114500	+		22273	10685	14680	14829	30229	30229					0.12336380896454102
VINPHKMKAL	10	Unmodified	_VINPHKMKAL_					0	0	0			REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8418579101562	2	575.841894	1149.66923	0.76843	0.00044249	-0.42422	-0.00024429	0.3442	0.00019821	575.8413780413409	84.521	1.1541	84.521	84.328	85.482	0					123	57	3	0	0	0	0.45627	1	20848	20848		3.5965	0.31518	1	1661900	+		22274	9237	14681	14830	30230	30230					0.10038630658914371
VIPATYYLW	9	Unmodified	_VIPATYYLW_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7825317382812	2	563.302593	1124.59063	0.32657	0.00018396	-0.33223	-0.00018715	-0.0056573	-3.1868E-06	563.3020411050109	86.507	0.32394	86.534	86.329	86.653	0.027573					22	13	2	0	0	0	0.20845	1	21248	21248		21.747	16.516	1	148100			22275	492	14682	14831	30231	30231					0.03332101625483119
VIPEVIKN	8	Unmodified	_VIPEVIKN_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.2802429199219	2	456.28166	910.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.348	1	87.376	86.876	87.876	0.027573								0	0	0	0.38822	1	21540	21540		2.5775	0	1				22276	1162	14683	14832	30232	30232					0.08991545936930834
VIQDPFQQ	8	Unmodified	_VIQDPFQQ_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7498474121094	2	487.750724	973.486896	0.036942	1.8018E-05	-1.809	-0.00088236	-1.7721	-0.00086434	487.7497523650302	50.373	0.47074	50.373	50.18	50.651	0					31	16	3	0	0	0	0.53118	1	10479	10479		7.2892	2.5332	1	195600	+		22277	9900	14684	14833	30233	30233					-0.0009080548219344564
VIQENEHAL	9	Unmodified	_VIQENEHAL_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7720947265625	2	526.772188	1051.52982	-0.11352	-5.9797E-05	-0.0085338	-4.4954E-06	-0.12205	-6.4293E-05	526.7721399366895	32.935	0.66992	32.935	32.735	33.404	0					72	26	4	0	0	0	0.0097877	2	5181	5136;5181		67.838	37.202	1	424470			22278	1817	14685	14834	30234;30235	30235					0.006119645752278302
VIQENEHAL	9	Unmodified	_VIQENEHAL_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7721557617188	2	526.772188	1051.52982	-0.11451	-6.0321E-05	-0.027222	-1.434E-05	-0.14173	-7.466E-05	526.7721428409252	32.863	0.84029	32.937	32.753	33.593	0.074322					77	34	4	0	0	0	0.023873	2	5047	5001;5047		55.503	24.866	1	328670			22279	1817	14685	14834	30236;30237	30237					0.006119645752278302
VIRFRVMK	8	Unmodified	_VIRFRVMK_					0	0	0			REV__ENST00000533778.6_1_11:125496395-125496497:+|nuORF	REV__ENST00000533778.6_1_11:125496395-125496497:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.8268432617188	2	524.826047	1047.63754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.02	1	119.02	118.52	119.52	0								0	0	0	0.38822	1	30029	30029		0.69038	0	1		+		22280	12368	14686	14835	30238	30238					0.11562682695625881
VIRPHKSF	8	Unmodified	_VIRPHKSF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.72576904296875	2	492.292894	982.571235	0.45427	0.00022363	-1.4702	-0.00072379	-1.016	-0.00050016	492.29213422023497	81.629	0.51682	81.651	81.421	81.938	0.021866					30	18	2	0	0	0	0.3576	1	19734	19734		5.7604	0	1	76083			22281	941	14687	14836	30239	30239					0.07925190125229165
VISISYGSCI	10	Unmodified	_VISISYGSCI_					0	0	0		ENSG00000205329|ENST00000641740|OR6C3	ENSG00000205329|ENST00000641740|OR6C3	ENSG00000205329|ENST00000641740|OR6C3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2552490234375	2	521.267893	1040.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.409	1	45.409	44.909	45.909	0								0	0	0	0.33092	1	8926	8926		10.824	0.75	1				22282	5514	14688	14837	30240	30240					0.0025927461438186583
VITTGAPVSL	10	Unmodified	_VITTGAPVSL_					0	0	0			REV__HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	REV__HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2875061035156	2	479.2844	956.554247	-0.16016	-7.6761E-05	0.37755	0.00018095	0.21739	0.00010419	479.2844479289534	49.137	0.87642	49.214	48.872	49.749	0.076607					85	31	4	0	0	0	0.41688	1	9869	9869		10.074	0	1	929040	+		22283	10292	14689	14838	30241	30241					0.0742322472875685
VIYKLVPLI	9	Unmodified	_VIYKLVPLI_					0	0	0		tr|U7T3V8|U7T3V8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00278PE=3SV=1	tr|U7T3V8|U7T3V8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00278PE=3SV=1	tr|U7T3V8|U7T3V8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00278PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3548583984375	2	529.354628	1056.6947	0.56089	0.00029691	0.099266	5.2547E-05	0.66016	0.00034946	529.354568942938	79.598	0.58636	79.598	79.372	79.958	0					45	20	3	0	0	0	0.21398	1	19366	19366		16.942	0	1	239860			22284	13714	14690	14839	30242	30242					0.16862428452986933
VIYTCKEEF	9	Unmodified	_VIYTCKEEF_					0	0	0			REV__nc|ENSG00000057657|O75626-2|PRDM1	REV__nc|ENSG00000057657|O75626-2|PRDM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8267211914062	2	566.273175	1130.5318	0.23642	0.00013388	-0.85681	-0.00048519	-0.62039	-0.00035131	566.7745714884795	89.1	1.0098	89.133	88.639	89.648	0.032265					86	39	3	0	0	0	0.24263	1	22079	22079		12.532	0.89125	1	129950	+		22285	8073	14691	14840	30243	30243					-0.028247427311725914
VIYTTFNIE	9	Unmodified	_VIYTTFNIE_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.790283203125	2	550.28714	1098.55973	0.4632	0.00025489	0.85484	0.00047041	1.318	0.0007253	550.2877404217147	91.17	1.0077	91.17	90.785	91.793	0					79	36	3	0	0	0	0.19398	1	22804	22804		19.257	7.6167	1	455770			22286	3466	14692	14841	30244	30244					0.014389035205795153
VKAKTLRKL	9	Unmodified	_VKAKTLRKL_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;ENSG00000169398|ENST00000696786|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8667602539062	2	528.866226	1055.7179	-0.05011	-2.6501E-05	0.16979	8.9795E-05	0.11968	6.3293E-05	528.8662820288691	112.01	1.1536	112.01	111.86	113.02	0					293	129	4	0	0	0	0.34646	3	28642	28642;28677;28714		0.6015	0	1	6392000			22287	7557	14693	14842	30245;30246;30247	30245					0.1922686729033103
VKAMEGEAL	9	Unmodified	_VKAMEGEAL_					0	0	0			REV__tr|U7SPX1|U7SPX1_FUSNUNucleoid-associatedproteinHMPREF1766_01675OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01675PE=3SV=1	REV__tr|U7SPX1|U7SPX1_FUSNUNucleoid-associatedproteinHMPREF1766_01675OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01675PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.25579833984375	2	474.24696	946.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.275	1	38.362	37.862	38.862	0.08688								0	0	0	0.27613	1	6647	6647		3.9444	0	1		+		22288	13121	14694	14843	30248	30248					0.003987189258737089
VKCGGGGG	8	Unmodified	_VKCGGGGG_					0	0	0		ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8704223632812	1	634.297721	633.290445	0.30277	0.00019205	-3.1828	-0.0020188	-2.88	-0.0018268	634.2955667287808	88.133	0.47575	88.163	87.935	88.411	0.030037					23	16	2	0	0	0	0.3576	1	21771	21771		0.69038	0	1	67098			22289	649	14695	14844	30249	30249					-0.04086888856920723
VKCGYFYLEF	10	Unmodified	_VKCGYFYLEF_					0	0	0		ENSG00000253719|ENST00000519948|ATXN7L3B	ENSG00000253719|ENST00000519948|ATXN7L3B	ENSG00000253719|ENST00000519948|ATXN7L3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8057250976562	2	634.804642	1267.59473	0.42582	0.00027031	1.6195	0.0010281	2.0453	0.0012984	634.8056063870379	82.399	1.059	82.399	81.931	82.99	0					64	37	2	0	0	0	0.39662	2	20175	20175;20183		12.241	0.74595	1	127300			22290	5691	14696	14845	30250;30251	30250					-0.028361769431512585
VKCGYFYLEF	10	Unmodified	_VKCGYFYLEF_					0	0	0		ENSG00000253719|ENST00000519948|ATXN7L3B	ENSG00000253719|ENST00000519948|ATXN7L3B	ENSG00000253719|ENST00000519948|ATXN7L3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.80615234375	2	634.804642	1267.59473	0.28672	0.00018201	1.5927	0.001011	1.8794	0.0011931	634.8056844476787	82.538	0.88548	82.56	82.018	82.904	0.021751					56	31	2	0	0	0	0.42901	2	19987	19987;20033		8.7454	0.58988	1	113060			22291	5691	14696	14845	30252;30253	30252					-0.028361769431512585
VKCSVKVS	8	Unmodified	_VKCSVKVS_					0	0	0			REV__nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	REV__nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.2469177246094	2	425.246763	848.478974	-0.0095762	-4.0722E-06	0.75746	0.00032211	0.74788	0.00031804	425.24694532722185	91.091	0.31438	91.127	90.994	91.308	0.035446					15	10	2	0	0	0	0.53858	1	22694	22694		2.3027	0	1	82898	+		22292	12885	14697	14846	30254	30254					0.048673439966933074
VKDASDQNFD	10	Unmodified	_VKDASDQNFD_					0	0	0		ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.754150390625	2	569.754192	1137.49383	0.67335	0.00038365	-1.0043	-0.00057222	-0.33097	-0.00018857	569.7537504878082	65.923	0.70418	65.923	65.704	66.408	0					53	24	3	0	0	0	0.45313	1	15152	15152		4.1895	0.24511	1	635810			22293	4329	14698	14847	30255	30255					-0.06941537392276587
VKDASDQNFD	10	Unmodified	_VKDASDQNFD_					0	0	0		ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7542724609375	2	569.754192	1137.49383	0.51754	0.00029487	-0.65161	-0.00037126	-0.13407	-7.6388E-05	569.7538332664839	65.858	0.71487	65.924	65.684	66.399	0.066872					57	26	3	0	0	0	0.45313	2	14992	14992;15040		4.1895	1.1943	1	466690			22294	4329	14698	14847	30256;30257	30256					-0.06941537392276587
VKEKELNKL	9	Unmodified	_VKEKELNKL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;DSP|p.L319P|1|0.2|ENSG00000096696|chr6:7566393-7566393|T/C|missense_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8369140625	2	550.837331	1099.66011	-0.15872	-8.743E-05	0.13412	7.388E-05	-0.024598	-1.355E-05	550.8372644117178	23.079	0.58543	23.079	22.922	23.508	0					118	56	3	0	0	0	0.32112	1	2280	2280		3.9444	0	1	88099			22295	1110	14699	14848	30258	30258					0.11426560574250288
VKELVRYT	8	Unmodified	_VKELVRYT_					0	0	0		ENST00000523352.1_1_8:95884148-95885795:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523352.1_1_8:95884148-95885795:+|nuORF	ENST00000523352.1_1_8:95884148-95885795:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.75860595703125	2	504.297842	1006.58113	-0.27565	-0.00013901	-0.13779	-6.9486E-05	-0.41344	-0.0002085	504.29754807842187	45.097	0.57075	45.097	44.606	45.177	0					29	20	2	0	0	0	0.3576	1	8706	8706		1.8442	0	1	28026			22296	4042	14700	14849	30259	30259					0.0781033333993264
VKERNFIIF	9	Unmodified	_VKERNFIIF_					0	0	0			REV__ENSG00000169302|ENST00000397936|STK32A	REV__ENSG00000169302|ENST00000397936|STK32A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.340576171875	2	583.340041	1164.66553	0.98395	0.00057398	-0.38365	-0.0002238	0.6003	0.00035018	583.3397413291866	80.943	0.93044	80.943	80.702	81.632	0					77	31	4	0	0	0	0.2125	1	19813	19813		17.113	1.8644	1	1230200	+		22297	10169	14701	14850	30260	30260					0.0897828415670574
VKFLFHSYY	9	Unmodified	_VKFLFHSYY_					0	0	0			REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.878173828125	3	401.878087	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.815	1	26.815	26.315	27.315	0								0	0	0	0.2927	1	3367	3367		0.23584	0	1		+		22298	7732	14702	14851	30261	30261					0.019229063740567653
VKFPEDAL	8	Unmodified	_VKFPEDAL_					0	0	0		TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant;nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7	TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1722106933594	2	459.750193	917.485833	-0.13822	-6.3547E-05	-2.454	-0.0011282	-2.5922	-0.0011918	459.7506358397091	23.368	0.35579	23.368	23.094	23.45	0					45	33	2	0	0	0	0.3576	1	2411	2411		0.69038	0	1	10456			22299	5202	14703	14852	30262	30262					0.023789801488874218
VKFQRRLF	8	Unmodified	_VKFQRRLF_					0	0	0			REV__ENSG00000101327|ENST00000217305|PDYN	REV__ENSG00000101327|ENST00000217305|PDYN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.332763671875	2	547.335093	1092.65563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.98	1	103.98	103.48	104.48	0								0	0	0	0.38822	1	26742	26742		0.69038	0	1		+		22300	8419	14704	14853	30263	30263					0.1130114094196415
VKFWYDGY	8	Unmodified	_VKFWYDGY_					0	0	0		tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1;tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1	tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1	tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.828857421875	2	539.255643	1076.49673	0.44623	0.00024063	-4.3327	-0.0023364	-3.8864	-0.0020958	539.2535930831302	50.82	0.25823	50.89	50.738	50.996	0.069874					13	9	2	0	0	0	0.3576	1	10422	10422		2.3027	0.4585	1	42436			22301	13541	14705	14854	30264	30264					-0.03845617476804364
VKFYLPPTPG	10	Unmodified	_VKFYLPPTPG_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;ENST00000472593.1_1_3:183521690-183528368:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.815185546875	2	559.815867	1117.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.231	1	24.33	23.83	24.83	0.099739								0	0	0	0.33892	1	2502	2502		1.4819	0.68827	1				22302	3953	14706	14855	30265	30265					0.06307790516780187
VKGLTLLSK	9	Unmodified	_VKGLTLLSK_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.81939697265625	2	479.81841	957.622267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.55	1	103.55	103.05	104.05	0								0	0	0	0.29525	1	26623	26623		0	0	1		+		22303	8838	14707	14856	30266	30266					0.14176094379433835
VKGSRTTSSSS	11	Unmodified	_VKGSRTTSSSS_					0	0	0			REV__ENST00000591945.1_1_17:40118860-40120019:+|nuORF	REV__ENST00000591945.1_1_17:40118860-40120019:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7830810546875	2	548.783284	1095.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.494	1	25.494	24.994	25.994	0								0	0	0	0.34212	1	2991	2991		0	0	1		+		22304	12585	14708	14857	30267	30267					0.00806144252987906
VKHEKEAVI	9	Unmodified	_VKHEKEAVI_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.80810546875	2	526.808574	1051.60259	-0.13945	-7.3462E-05	0.047981	2.5277E-05	-0.091466	-4.8185E-05	526.8084662683311	31.028	1.2294	31.028	30.799	32.028	0					117	56	4	0	0	0	0.34754	1	4734	4734		0.45834	0	1	263180			22305	481	14709	14858	30268	30268					0.07885718368675043
VKILDFPAL	9	Unmodified	_VKILDFPAL_					0	0	0			REV__ENST00000531791.1_1_11:65143880-65144565:-|nuORF	REV__ENST00000531791.1_1_11:65143880-65144565:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.3114318847656	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.22	1	106.22	105.72	106.72	0								0	0	0	0.28527	1	27384	27384		2.0598	0.57785	1		+		22306	9879	14710	14859	30269	30269					0.10464692005132292
VKILVVVII	9	Unmodified	_VKILVVVII_					0	0	0			REV__nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	REV__nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.755615234375	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.382	1	99.425	98.925	99.925	0.042839								0	0	0	0.29233	1	25201	25201		0.6015	0	1		+		22307	9280	14711	14860	30270	30270					0.21787018832651484
VKKDPEIGT	9	Unmodified	_VKKDPEIGT_					0	0	0			REV__tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	REV__tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2499694824219	2	493.779482	985.544411	0.41612	0.00020547	-0.50015	-0.00024696	-0.084025	-4.149E-05	493.7791774000542	37.914	0.5095	37.914	37.729	38.239	0					28	17	2	0	0	0	0.24791	1	6734	6734		10.074	1.3285	1	69553	+		22308	13162	14712	14861	30271	30271					0.05106036723384477
VKKFRQKK	8	Unmodified	_VKKFRQKK_					0	0	0		ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.349853515625	2	531.350743	1060.68693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.34	1	109.36	108.86	109.86	0.019402								0	0	0	0.38822	1	27957	27957		0.69038	0	1				22309	1668	14713	14862	30272	30272					0.15901713976063547
VKKFRQKK	8	Unmodified	_VKKFRQKK_					0	0	0		ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.36572265625	2	531.350743	1060.68693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.39	1	109.41	108.91	109.91	0.019402								0	0	0	0.38822	1	27971	27971		0.69038	0	1				22310	1668	14713	14862	30273	30273					0.15901713976063547
VKKIFVLVLL	10	Unmodified	_VKKIFVLVLL_					0	0	0			REV__ENSG00000101017|ENST00000372285|CD40	REV__ENSG00000101017|ENST00000372285|CD40	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7911376953125	2	586.412478	1170.8104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.379	1	63.45	62.95	63.95	0.071018								0	0	0	0.33979	1	14248	14248		0.45834	0	1		+		22311	8409	14714	14863	30274	30274					0.23182952303841375
VKKKGIAA	8	Unmodified	_VKKKGIAA_					0	0	0		ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.7787170410156	2	407.779088	813.543623	0.14887	6.0706E-05	-0.74043	-0.00030193	-0.59156	-0.00024122	407.7786191128432	112.56	0.81144	112.56	112.32	113.13	0					231	93	3	0	0	0	0.53817	3	28886	28809;28847;28886		2.5775	0	1	3200800			22312	5448	14715	14864	30275;30276;30277	30277					0.12939286864968835
VKKKGIAA	8	Unmodified	_VKKKGIAA_					0	0	0		ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.7786560058594	2	407.779088	813.543623	0.0823	3.356E-05	-1.3057	-0.00053244	-1.2234	-0.00049888	407.77861925610387	112.52	0.94073	112.54	112.24	113.18	0.014595					277	110	4	0	0	0	0.53817	4	28796	28686;28723;28760;28796		2.5775	0	1	2932700			22313	5448	14715	14864	30278;30279;30280;30281	30281					0.12939286864968835
VKKKKIKR	8	Unmodified	_VKKKKIKR_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENST00000562367.1_1_16:58208309-58230657:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.358642578125	2	514.376761	1026.73897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.16	1	113.17	112.67	113.67	0.013817								0	0	0	0.38822	1	28878	28878		0.69038	0	1				22314	764	14716	14865	30282	30282					0.22666877389815454
VKKKKIVRIRV	11	Unmodified	_VKKKKIVRIRV_					0	0	0			REV__ENSG00000088882|ENST00000380605|CPXM1	REV__ENSG00000088882|ENST00000380605|CPXM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.3167419433594	3	456.329279	1365.96601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.1	1	111.1	110.6	111.6	0								0	0	0	0.34185	1	28471	28471		0.094841	0.094841	1		+		22315	8291	14717	14866	30283	30283					0.2976641587795257
VKKKKKKKG	9	Unmodified	_VKKKKKKKG_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.39013671875	2	536.389868	1070.76518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.52	1	110.54	110.04	111.04	0.017242								0	0	0	0.29525	1	28215	28215		0	0	1		+		22316	11893	14718	14867	30284	30284					0.2326314656129398
VKKKKKKKG	9	Unmodified	_VKKKKKKKG_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.3895263671875	2	536.389868	1070.76518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.6	1	110.61	110.11	111.11	0.017242								0	0	0	0.29525	1	28229	28229		0	0	1		+		22317	11893	14718	14867	30285	30285					0.2326314656129398
VKKKKKKKG	9	Unmodified	_VKKKKKKKG_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.3905029296875	2	536.389868	1070.76518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.87	1	111.88	111.38	112.38	0.014595								0	0	0	0.29525	1	28517	28517		0	0	1		+		22318	11893	14718	14867	30286	30286					0.2326314656129398
VKKKKKKRQRY	11	Unmodified	_VKKKKKKRQRY_					0	0	0		ENST00000358951.6_1_1:220323782-220323881:-|nuORF	ENST00000358951.6_1_1:220323782-220323881:-|nuORF	ENST00000358951.6_1_1:220323782-220323881:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.3325500488281	3	497.331571	1488.97288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.54	1	116.56	116.06	117.06	0.013062								0	0	0	0.34212	1	29554	29554		0	0	1				22319	6142	14719	14868	30287	30287					0.2479572875854501
VKKKKKTKK	9	Unmodified	_VKKKKKTKK_					0	0	0			REV__ENSG00000135040|ENST00000361671|NAA35	REV__ENSG00000135040|ENST00000361671|NAA35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.904052734375	2	558.402976	1114.7914	0.46299	0.00025853	-0.49128	-0.00027433	-0.028296	-1.5801E-05	558.4024690990067	111.27	0.68179	111.28	110.85	111.53	0.015678					196	97	3	0	0	0	0.34646	1	28421	28421		0.6015	0.6015	1	1507900	+		22320	9195	14720	14869	30288	30288					0.23859415732772504
VKKKLKIYGN	10	Unmodified	_VKKKLKIYGN_					0	0	0		ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.886474609375	2	595.884616	1189.75468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.559	1	53.559	53.059	54.059	0								0	0	0	0.33984	1	11396	11396		0.40072	0.093686	1				22321	7010	14721	14870	30289	30289					0.1673911911623236
VKKKRAKK	8	Unmodified	_VKKKRAKK_					0	0	0			REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF	REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.3527526855469	2	493.353286	984.692019	0.32912	0.00016237	-0.3619	-0.00017854	-0.03278	-1.6172E-05	493.35298156898415	112.88	0.31674	112.89	112.87	113.18	0.013809					72	41	2	0	0	0	0.54199	1	28855	28855		0	0	1	510990	+		22322	8481	14722	14871	30290	30290					0.1990601783868442
VKKKRAKK	8	Unmodified	_VKKKRAKK_					0	0	0			REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF	REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.35296630859375	2	493.353286	984.692019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.2	1	113.22	112.72	113.72	0.013817								0	0	0	0.38822	1	28890	28890		0	0	1		+		22323	8481	14722	14871	30291	30291					0.1990601783868442
VKKMKETFKE	10	Unmodified	_VKKMKETFKE_					0	0	0		nc|ENSG00000115425|Q9BY49-2|PECR;ENSG00000115425|ENST00000265322|PECR	nc|ENSG00000115425|Q9BY49-2|PECR	nc|ENSG00000115425|Q9BY49-2|PECR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.9074096679688	2	634.357573	1266.70059	-0.17313	-0.00010983	-0.52121	-0.00033063	-0.69434	-0.00044046	634.3566371429598	108.34	0.06179	108.34	108.3	108.36	0					12	8	2	0	0	0	0.31803	1	27938	27938		3.2813	0	1	1453600			22324	1904	14723	14872	30292	30292					0.07791158902341522
VKKMKLNKI	9	Unmodified	_VKKMKLNKI_					0	0	0			REV__ENST00000367435.3_1_1:193219869-193219926:+|nuORF	REV__ENST00000367435.3_1_1:193219869-193219926:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.36181640625	2	551.362462	1100.71037	0.42044	0.00023182	-2.3337	-0.0012867	-1.9132	-0.0010549	551.3612158011389	109.2	0.12539	109.22	109.13	109.25	0.019402					29	15	2	0	0	0	0.33704	1	27912	27912		1.8442	0	1	1509200	+		22325	11564	14724	14873	30293	30293					0.1640439169837009
VKKQLKLR	8	Unmodified	_VKKQLKLR_					0	0	0			REV__ENST00000373980.8_1_10:52913078-53227515:+|nuORF	REV__ENST00000373980.8_1_10:52913078-53227515:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8530578613281	2	506.853119	1011.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.11	1	113.12	112.62	113.62	0.013817								0	0	0	0.38822	1	28868	28868		0	0	1		+		22326	11623	14725	14874	30294	30294					0.18630598118818398
VKKSLTNLR	9	Unmodified	_VKKSLTNLR_					0	0	0			REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221	REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.8368530273438	2	529.837665	1057.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.532	1	23.632	23.132	24.132	0.099739								0	0	0	0.29525	1	2314	2314		0	0	1		+		22327	9921	14726	14875	30295	30295					0.1342540001389807
VKLAKRLKK	9	Unmodified	_VKLAKRLKK_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.3895874023438	2	542.389868	1082.76518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.45	1	116.45	115.95	116.95	0								0	0	0	0.29525	1	29642	29642		0	0	1				22328	3725	14727	14876	30296	30296					0.22711146561300666
VKLAKRLKK	9	Unmodified	_VKLAKRLKK_					0	0	0		nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	nc|ENSG00000159352|P55036-2|PSMD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.3892822265625	2	542.389868	1082.76518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.65	1	117.65	117.15	118.15	0								0	0	0	0.29525	1	29827	29827		0	0	1				22329	3725	14727	14876	30297	30297					0.22711146561300666
VKLFTKIIIK	10	Unmodified	_VKLFTKIIIK_					0	0	0			REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.9136352539062	2	601.915384	1201.81622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.43	1	112.43	111.93	112.93	0								0	0	0	0.33877	1	28795	28795		1.6526	1.1943	1		+		22330	13086	14728	14877	30298	30298					0.22338050815505994
VKLLKLFLSK	10	Unmodified	_VKLLKLFLSK_					0	0	0		ENSG00000135828|ENST00000367559|RNASEL;nc|ENSG00000135828|Q05823-2|RNASEL	ENSG00000135828|ENST00000367559|RNASEL	ENSG00000135828|ENST00000367559|RNASEL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.906005859375	2	594.907559	1187.80057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.09	1	112.09	111.59	112.59	0								0	0	0	0.33988	1	28693	28693		0.35063	0	1				22331	2747	14729	14878	30299	30299					0.2141776429843958
VKLLKLVKKV	10	Unmodified	_VKLLKLVKKV_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.430419921875	2	584.431202	1166.84785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.109	1	58.179	57.679	58.679	0.070477								0	0	0	0.34018	1	12647	12647		0	0	1				22332	4791	14730	14879	30300	30300					0.27110043569427944
VKLTVYTNF	9	Unmodified	_VKLTVYTNF_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.807861328125	2	542.8055	1083.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.726	1	80.749	80.249	81.249	0.023605								0	0	0	0.25287	1	19523	19523		8.7454	0.83525	1		+		22333	10908	14731	14880	30301	30301					0.05799200137130356
VKNNIWYPKF	10	Unmodified	_VKNNIWYPKF_					0	0	0		ENST00000541187.5_1_12:121659934-121666726:+|nuORF;ENST00000538417.2_3_12:121659934-121670193:+|nuORF;ENST00000543430.5_1_12:121659934-121670518:+|nuORF;ENST00000499638.6_1_12:121661214-121671021:+|nuORF;ENST00000543318.5_1_12:121659934-121671349:+|nuORF;PTPN1-P2RX4|1|fusion;nc|ENSG00000135124|Q99571-3|P2RX4;P2RX4|p.M361Ifs*13|1|0.33|ENSG00000135124|chr12:121233033-121233034|-/T|frameshift_variant;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4	ENST00000541187.5_1_12:121659934-121666726:+|nuORF	ENST00000541187.5_1_12:121659934-121666726:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.90802001953125	3	436.908157	1307.70264	0.5781	0.00025258	-0.63964	-0.00027947	-0.06154	-2.6888E-05	436.9078150873712	68.473	0.80902	68.473	68.267	69.076	0					64	29	3	0	0	0	0.47161	1	16118	16118		0.69767	0	1	285830			22334	2715	14732	14881	30302	30302					0.061099557024363094
VKRDSGSGGFN	11	Unmodified	_VKRDSGSGGFN_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2778930664062	2	562.278169	1122.54179	-0.012052	-6.7767E-06	0.0077238	4.3429E-06	-0.0043284	-2.4338E-06	562.2780743257362	26.186	0.4169	26.278	26.103	26.52	0.091507					72	36	3	0	0	0	0.41892	1	3112	3112		0	0	1	53823			22335	4989	14733	14882	30303	30303					-0.014584186815454814
VKRIPWPQCF	10	Unmodified	_VKRIPWPQCF_					0	0	0			REV__ENST00000414406.2_1_12:20095069-20095366:+|nuORF	REV__ENST00000414406.2_1_12:20095069-20095366:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3457641601562	2	637.347343	1272.68013	0.33671	0.0002146	-2.7482	-0.0017516	-2.4115	-0.001537	637.846970012263	85.666	0.10295	85.666	85.605	85.708	0					5	4	2	0	0	0	0.46656	1	21185	21185		1.6526	0	1	54298	+		22336	11792	14734	14883	30304	30304					0.054700330331797886
VKRKKKKKK	9	Unmodified	_VKRKKKKKK_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3089599609375	2	585.929692	1169.84483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.741	1	34.741	34.241	35.241	0								0	0	0	0.29525	1	5708	5708		0	0	1				22337	5244	14735	14884	30305	30305					0.26670213235297524
VKRVAPKR	8	Unmodified	_VKRVAPKR_					0	0	0		ENSG00000102053|ENST00000338957|ZC3H12B;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	ENSG00000102053|ENST00000338957|ZC3H12B	ENSG00000102053|ENST00000338957|ZC3H12B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.321044921875	2	477.321986	952.629418	-0.0015759	-7.5223E-07	-2.4652	-0.0011767	-2.4668	-0.0011774	477.3208101174772	108.95	0.11787	108.97	108.93	109.05	0.019402					25	17	2	0	0	0	0.54199	1	27875	27875		0	0	1	912720			22338	1291	14736	14885	30306	30306					0.15120871770500344
VKRVAPKR	8	Unmodified	_VKRVAPKR_					0	0	0		ENSG00000102053|ENST00000338957|ZC3H12B;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	ENSG00000102053|ENST00000338957|ZC3H12B	ENSG00000102053|ENST00000338957|ZC3H12B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	477.321986	952.629418	-0.31243	-0.00014913	-2.1934	-0.0010469	-2.5058	-0.0011961	477.3209141892622	108.94	0.20715	108.94	108.9	109.1	0	-0.015566	0.00012816	NaN	0	37	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	695240			22339	1291	14736	14885							0.15120871770500344
VKRVKKKK	8	Unmodified	_VKRVKKKK_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.354736328125	2	507.368936	1012.72332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.86	1	112.86	112.36	113.36	0								0	0	0	0.38822	1	28927	28927		0	0	1		+		22340	11893	14737	14886	30307	30307					0.21746590872783145
VKRVKKKK	8	Unmodified	_VKRVKKKK_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.36907958984375	2	507.368936	1012.72332	0.233	0.00011822	-0.42001	-0.0002131	-0.18701	-9.4882E-05	507.3685430112804	109.42	0.44215	109.44	109.19	109.64	0.019402					97	49	3	0	0	0	0.54199	1	27976	27976		0	0	1	695480	+		22341	11893	14737	14886	30308	30308					0.21746590872783145
VKRVKKKK	8	Unmodified	_VKRVKKKK_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.36895751953125	2	507.368936	1012.72332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.86	1	109.88	109.38	110.38	0.017242								0	0	0	0.38822	1	28096	28096		0	0	1		+		22342	11893	14737	14886	30309	30309					0.21746590872783145
VKRVKKKK	8	Unmodified	_VKRVKKKK_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.334716796875	2	507.368936	1012.72332	0.233	0.00011822	-0.42001	-0.0002131	-0.18701	-9.4882E-05	507.3685430112804	109.42	0.44215	109.44	109.19	109.64	0.019402					97	49	3	0	0	0	0.3576	1	27978	27978		0	0	1	695480	+		22343	11893	14737	14886	30310	30310					0.21746590872783145
VKRVRLVI	8	Unmodified	_VKRVRLVI_					0	0	0			REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12	REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.847412109375	2	491.847836	981.681119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.47	1	113.47	112.97	113.97	0								0	0	0	0.38822	1	29055	29055		0	0	1		+		22344	9974	14738	14887	30311	30311					0.1895461546439492
VKRVRLVI	8	Unmodified	_VKRVRLVI_					0	0	0			REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12	REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.34539794921875	2	491.847836	981.681119	0.27473	0.00013512	-0.17601	-8.6568E-05	0.098722	4.8556E-05	491.8476451756246	113.12	0.5863	113.14	112.99	113.58	0.013809					137	84	2	0	0	0	0.3576	1	28925	28925		0	0	1	187270	+		22345	9974	14738	14887	30312	30312					0.1895461546439492
VKSSKSTKTK	10	Unmodified	_VKSSKSTKTK_					0	0	0			REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF	REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.3324584960938	2	547.332413	1092.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.7	1	105.73	105.23	106.23	0.029739								0	0	0	0.34018	1	27050	27050		0	0	1		+		22346	9549	14739	14888	30313	30313					0.10765372568857856
VKTAKLKIR	9	Unmodified	_VKTAKLKIR_					0	0	0		ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8661499023438	2	528.866226	1055.7179	-0.05011	-2.6501E-05	0.16979	8.9795E-05	0.11968	6.3293E-05	528.8662820288691	112.01	1.1536	112.01	111.86	113.02	0					293	129	4	0	0	0	0.3354	1	28634	28634		2.0598	1.4583	1	6392000			22347	6967	14740	14889	30314	30314					0.19226867290285554
VKTAKLKIR	9	Unmodified	_VKTAKLKIR_					0	0	0		ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8660278320312	2	528.866226	1055.7179	0.2804	0.0001483	-0.27937	-0.00014775	0.001032	5.4579E-07	528.8661533828715	112.03	0.84234	112.04	111.88	112.73	0.014595					207	99	3	0	0	0	0.3354	2	28529	28529;28564		2.0598	1.4583	1	4684300			22348	6967	14740	14889	30315;30316	30315					0.19226867290285554
VKTFIRTFI	9	Unmodified	_VKTFIRTFI_					0	0	0			REV__ENSG00000157131|ENST00000361249|C8A	REV__ENSG00000157131|ENST00000361249|C8A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.3438720703125	2	562.844959	1123.67537	0.46522	0.00026185	0.85768	0.00048274	1.3229	0.00074459	562.8452882362565	84.308	0.29733	84.329	84.037	84.334	0.021744					17	11	2	0	0	0	0.259	1	20559	20559		1.6526	0	1	476720	+		22349	9770	14741	14890	30317	30317					0.11847472162094164
VKVPTEPL	8	Unmodified	_VKVPTEPL_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.7680358886719	2	441.768386	881.522219	0.95048	0.00041989	-0.37451	-0.00016545	0.57597	0.00025444	441.76823492285337	81.128	1.4162	81.128	80.813	82.229	0					120	48	5	0	0	0	0.53494	2	20024	20024;20085		4.756	0	1	6441300			22350	467	14742	14891	30318;30319	30318					0.07671857045602337
VKVRFKFFYLL	11	Unmodified	_VKVRFKFFYLL_					0	0	0		ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF;APLP2-ST14|1|fusion;APLP2-ST14|2|fusion	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2991943359375	3	487.298986	1458.87513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.077	1	87.105	86.605	87.605	0.027573								0	0	0	0.34212	1	21460	21460		0	0	1				22351	3402	14743	14892	30320	30320					0.16404527109853007
VKVRVVRI	8	Unmodified	_VKVRVVRI_					0	0	0		ENST00000492143.5_1_7:148514900-148516105:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF	ENST00000492143.5_1_7:148514900-148516105:-|nuORF	ENST00000492143.5_1_7:148514900-148516105:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.840087890625	2	484.840011	967.665469	0.01633	7.9176E-06	-0.30119	-0.00014603	-0.28486	-0.00013811	484.83998783657864	112.2	1.5777	112.22	112.03	113.61	0.014595					328	199	3	0	0	0	0.53817	3	28756	28583;28618;28756		2.5775	0	1	7422700			22352	6812	14744	14893	30321;30322;30323	30323					0.1803432894735124
VKVSSKSRQ	9	Unmodified	_VKVSSKSRQ_					0	0	0			REV__nc|ENSG00000216937|Q96M83-5|CCDC7	REV__nc|ENSG00000216937|Q96M83-5|CCDC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8040466308594	2	509.803823	1017.59309	0.75821	0.00038654	-0.2462	-0.00012552	0.512	0.00026102	509.803620416363	80.911	3.0319	80.911	79.958	82.99	0					316	105	4	0	0	0	0.32112	1	19825	19825		3.9444	3.9444	1	1350800	+		22353	12891	14745	14894	30324	30324					0.08499950083137264
VKVYVNGVL	9	Unmodified	_VKVYVNGVL_					0	0	0			REV__ENST00000590135.5_1_19:36235145-36235544:-|nuORF	REV__ENST00000590135.5_1_19:36235145-36235544:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.8027038574219	2	495.80276	989.590967	0.83758	0.00041527	-0.52781	-0.00026169	0.30976	0.00015358	495.80243124683454	65.864	0.64995	65.864	65.598	66.248	0					32	22	2	0	0	0	0.29105	1	15218	15218		7.9102	1.187	1	254700	+		22354	12571	14746	14895	30325	30325					0.09575521345323068
VLAAYYSHL	9	Unmodified	_VLAAYYSHL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.3233642578125	2	518.776742	1035.53893	0.42107	0.00021844	-0.16989	-8.8136E-05	0.25118	0.00013031	518.7764730145494	74.558	0.76146	74.558	74.199	74.961	0					54	27	3	0	0	0	0.2491	1	17705	17705		8.5933	0.68312	1	540060			22355	3095	14747	14896	30326	30326					0.022583579315551106
VLAFVGLMFI	10	Unmodified	_VLAFVGLMFI_					0	0	0			REV__ENSG00000173285|ENST00000641535|OR10K1	REV__ENSG00000173285|ENST00000641535|OR10K1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3251342773438	2	555.325014	1108.63547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.914	1	22.914	22.414	23.414	0								0	0	0	0.34018	1	2264	2264		0	0	1		+		22356	10315	14748	14897	30327	30327					0.08550209167174216
VLAKEYDEL	9	Unmodified	_VLAKEYDEL_					0	0	0			REV__TTC12-LUC7L2|1|fusion	REV__TTC12-LUC7L2|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3311157226562	2	540.284597	1078.55464	0.6227	0.00033643	0.32607	0.00017617	0.94877	0.0005126	540.2847403095853	83.703	0.38083	83.703	83.519	83.9	0					19	12	2	0	0	0	0.22912	1	20623	20623		18.146	0	1	193070	+		22357	9609	14749	14898	30328	30328					0.018505996579506245
VLALFPLAF	9	Unmodified	_VLALFPLAF_					0	0	0			REV__ENST00000495414.5_1_3:143692156-143692375:+|nuORF	REV__ENST00000495414.5_1_3:143692156-143692375:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.804931640625	2	495.804771	989.59499	0.45656	0.00022636	-0.38812	-0.00019243	0.068431	3.3929E-05	495.8045722868177	104.56	0.45018	104.59	104.36	104.81	0.034004					65	43	2	0	0	0	0.31136	2	26691	26691;26726		5.2307	0	1	244390	+		22358	12179	14750	14899	30329;30330	30329					0.09977610839030149
VLALFPLAF	9	Unmodified	_VLALFPLAF_					0	0	0			REV__ENST00000495414.5_1_3:143692156-143692375:+|nuORF	REV__ENST00000495414.5_1_3:143692156-143692375:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.804771	989.59499	0.45656	0.00022636	-0.38812	-0.00019243	0.068431	3.3929E-05	495.8045722868177	104.56	0.45018	104.59	104.36	104.81	0.034004	0.0019365	-0.00011725	NaN	5.2307	65	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244390	+		22359	12179	14750	14899							0.09977610839030149
VLAPLFLLT	9	Unmodified	_VLAPLFLLT_					0	0	0			REV__ENST00000376334.3_1_9:68455249-68455366:-|nuORF	REV__ENST00000376334.3_1_9:68455249-68455366:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.8177185058594	2	493.817879	985.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.12	1	104.12	103.62	104.62	0								0	0	0	0.2722	1	26782	26782		4.756	0	1		+		22360	11641	14751	14900	30331	30331					0.12781880010504665
VLAPLFLLT	9	Unmodified	_VLAPLFLLT_					0	0	0			REV__ENST00000376334.3_1_9:68455249-68455366:-|nuORF	REV__ENST00000376334.3_1_9:68455249-68455366:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.2605895996094	2	493.817879	985.621205	0.27354	0.00013508	-0.29344	-0.0001449	-0.019899	-9.8266E-06	493.8177215445897	103.9	0.22482	103.9	103.84	104.07	0					31	22	2	0	0	0	0.25845	1	26733	26733		2.0598	0	1	60047	+		22361	11641	14751	14900	30332	30332					0.12781880010504665
VLCFGFLY	8	Unmodified	_VLCFGFLY_					0	0	0			REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|70|1|anti-sense	REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|70|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.24530029296875	2	481.246232	960.477911	0.0088353	4.2519E-06	-0.3473	-0.00016714	-0.33846	-0.00016288	481.24632003079427	107.19	0.34535	107.22	107.06	107.4	0.025711					75	33	3	0	0	0	0.53771	1	27427	27427		2.8892	0	1	151450	+		22362	12700	14752	14901	30333	30333					-0.003908703722345308
VLDNLMDKSH	10	Unmodified	_VLDNLMDKSH_					0	0	0		nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;ENSG00000173166|ENST00000319170|RAPH1	nc|ENSG00000173166|Q70E73-5|RAPH1	nc|ENSG00000173166|Q70E73-5|RAPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2932739257812	2	586.29243	1170.57031	0.74486	0.00043671	-0.55367	-0.00032461	0.19118	0.00011209	586.2918853025101	64.14	0.78893	64.14	63.844	64.632	0					60	27	3	0	0	0	0.43214	1	14706	14706		8.1555	1.9497	1	524350			22363	4529	14753	14902	30334	30334					-0.008154370966394708
VLDPRDII	8	Unmodified	_VLDPRDII_					0	0	0		nc|ENSG00000137411|Q5ST30-2|VARS2;ENST00000469358.5_1_6:30889720-30893984:+|nuORF;ENST00000477288.5_1_6:30884740-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-3|VARS2;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2	nc|ENSG00000137411|Q5ST30-2|VARS2	nc|ENSG00000137411|Q5ST30-2|VARS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.77691650390625	2	470.776742	939.538931	-0.076773	-3.6143E-05	0.43959	0.00020695	0.36282	0.0001708	470.7767688050609	49.617	0.57546	49.694	49.384	49.959	0.076603					37	20	3	0	0	0	0.50159	1	10106	10106		12.532	0.89125	1	167940			22364	2850	14754	14903	30335	30335					0.0667435793156983
VLDRAAELE	9	Unmodified	_VLDRAAELE_					0	0	0			REV__ENSG00000108479|ENST00000588479|GALK1	REV__ENSG00000108479|ENST00000588479|GALK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2877197265625	2	508.274564	1014.53457	0.14079	7.1559E-05	0.11487	5.8385E-05	0.25566	0.00012994	508.27458739449423	49.343	0.73339	49.343	49.088	49.822	0					66	25	4	0	0	0	0.24021	1	10205	10205		13.906	1.6654	1	1034300	+		22365	8617	14755	14904	30336	30336					0.02788848718000736
VLEAKRRHRHR	11	Unmodified	_VLEAKRRHRHR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.962158203125	3	486.62727	1456.85998	0.088261	4.295E-05	0.14978	7.2888E-05	0.23804	0.00011584	486.9617566537487	102.25	0.8049	102.25	101.98	102.79	0					151	56	5	0	0	0	0.4185	2	26180	26180;26216		0.094841	0	1	452060	+		22366	10615	14756	14905	30337;30338	30337					0.14982473085206038
VLEAKRRHRHR	11	Unmodified	_VLEAKRRHRHR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.962158203125	3	486.62727	1456.85998	0.088261	4.295E-05	0.14978	7.2888E-05	0.23804	0.00011584	486.9617566537487	102.25	0.8049	102.25	101.98	102.79	0					151	56	5	0	0	0	0.31101	1	26180	26180		0.094841	0	1	452060	+		22367	10615	14756	14905	30339	30339					0.14982473085206038
VLEAKRRHRHR	11	Unmodified	_VLEAKRRHRHR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.6276550292969	3	486.62727	1456.85998	0.22699	0.00011046	0.039814	1.9375E-05	0.26681	0.00012984	486.62719476227863	102.23	0.60775	102.27	102.04	102.64	0.040909					110	42	3	0	0	0	0.4185	1	26013	26013		0.094841	0	1	349870	+		22368	10615	14756	14905	30340	30340					0.14982473085206038
VLELLLEF	8	Unmodified	_VLELLLEF_					0	0	0		ENST00000471654.1_1_2:23914526-23929531:+|nuORF;ENSG00000119771|ENST00000486442|KLHL29;nc|ENSG00000119771|Q96CT2-2|KLHL29	ENST00000471654.1_1_2:23914526-23929531:+|nuORF	ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7906799316406	2	488.291694	974.568835	0.69501	0.00033937	0.80459	0.00039288	1.4996	0.00073225	488.29212136294495	80.315	0.619	80.315	80.109	80.728	0					27	21	2	0	0	0	0.3576	1	19532	19532		5.7604	0	1	195530			22369	2087	14757	14906	30341	30341					0.08053296876914828
VLELTADVF	9	Unmodified	_VLELTADVF_					0	0	0		ENST00000576225.5_1_17:79058928-79084738:+|nuORF	ENST00000576225.5_1_17:79058928-79084738:+|nuORF	ENST00000576225.5_1_17:79058928-79084738:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.776611328125	2	503.776408	1005.53826	-0.018106	-9.1213E-06	0.57097	0.00028764	0.55286	0.00027852	503.77661377681665	90.33	0.38512	90.364	90.216	90.601	0.034065					26	15	2	0	0	0	0.17247	1	22460	22460		21.747	7.165	1	126250			22370	7203	14758	14907	30342	30342					0.03571518491844472
VLELTADVF	9	Unmodified	_VLELTADVF_					0	0	0		ENST00000576225.5_1_17:79058928-79084738:+|nuORF	ENST00000576225.5_1_17:79058928-79084738:+|nuORF	ENST00000576225.5_1_17:79058928-79084738:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	503.776408	1005.53826	0.18698	9.4194E-05	0.083956	4.2295E-05	0.27093	0.00013649	503.7762554712903	90.343	0.45971	90.343	90.168	90.628	0	-0.010478	-0.00019387	NaN	21.747	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98456			22371	7203	14758	14907							0.03571518491844472
VLEPLSLPTF	10	Unmodified	_VLEPLSLPTF_					0	0	0		ENST00000494222.5_1_10:124157443-124172478:+|nuORF;ENST00000368990.7_2_10:124152762-124159877:+|nuORF	ENST00000494222.5_1_10:124157443-124172478:+|nuORF	ENST00000494222.5_1_10:124157443-124172478:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.766845703125	2	558.320983	1114.62741	0.51456	0.00028729	-0.14312	-7.9905E-05	0.37145	0.00020739	558.3206909873567	82.198	0.48461	82.22	81.969	82.454	0.021866					39	17	3	0	0	0	0.31456	1	20017	20017		14.838	2.3067	1	248970			22372	6189	14759	14908	30343	30343					0.07468353451372423
VLFALDRIW	9	Unmodified	_VLFALDRIW_					0	0	0			REV__ENSG00000196275|ENST00000451013|GTF2IRD2	REV__ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3296508789062	2	566.829309	1131.64407	0.18673	0.00010584	-0.32667	-0.00018516	-0.13994	-7.932E-05	567.3301013363641	89.27	0.88456	89.302	88.99	89.874	0.032257					101	33	4	0	0	0	0.31136	1	22030	22030		5.2307	0.47466	1	857900	+		22373	10347	14760	14909	30344	30344					0.08350899127958655
VLFGWLAAP	9	Unmodified	_VLFGWLAAP_					0	0	0			REV__ENST00000445792.7_1_X:305849-322301:-|nuORF	REV__ENST00000445792.7_1_X:305849-322301:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2784423828125	2	487.278921	972.543289	0.25754	0.0001255	-2.6652	-0.0012987	-2.4077	-0.0011732	487.277213345183	47.431	0.6967	47.514	47.032	47.729	0.083096					58	27	3	0	0	0	0.18003	1	9445	9445		20.871	1.6142	1	193210	+		22374	11903	14761	14910	30345	30345					0.05591867145119522
VLFHSSPLLL	10	Unmodified	_VLFHSSPLLL_					0	0	0			REV__ENST00000287169.7_1_11:57440401-57440632:+|nuORF	REV__ENST00000287169.7_1_11:57440401-57440632:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8381958007812	2	563.336967	1124.65938	0.30064	0.00016936	0.036962	2.0822E-05	0.3376	0.00019018	563.3369673787598	51.64	0.63986	51.71	51.475	52.115	0.069878					55	22	3	0	0	0	0.44246	1	10768	10768		6.2058	0	1	405100	+		22375	11309	14762	14911	30346	30346					0.10203765925189145
VLFICIYL	8	Unmodified	_VLFICIYL_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|80|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|80|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|80|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.80413818359375	2	492.285357	982.556161	0.33734	0.00016607	-0.13991	-6.8874E-05	0.19743	9.7193E-05	492.28533087790066	86.392	0.36578	86.418	86.197	86.563	0.025169					20	13	2	0	0	0	0.3576	1	21279	21279		2.8892	0	1	71605			22376	7383	14763	14912	30347	30347					0.06418562212991219
VLFINNSEI	9	Unmodified	_VLFINNSEI_					0	0	0			REV__ENSG00000121361|ENST00000240662|KCNJ8	REV__ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.291259765625	2	524.787307	1047.56006	-0.24275	-0.00012739	-0.39989	-0.00020986	-0.64263	-0.00033724	524.7869903119781	45.458	0.717	45.458	45.238	45.955	0					53	18	4	0	0	0	0.28587	1	9082	9082		8.5933	1.304	1	653970	+		22377	8898	14764	14913	30348	30348					0.038183232404207956
VLFLFPLPA	9	Unmodified	_VLFLFPLPA_					0	0	0			REV__ENST00000434391.6_1_1:26795628-26795805:+|nuORF	REV__ENST00000434391.6_1_1:26795628-26795805:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.792236328125	2	508.812596	1015.61064	0.24602	0.00012518	-4.447	-0.0022627	-4.2009	-0.0021375	508.81043521043256	61.419	0.21127	61.492	61.296	61.507	0.073418					11	9	2	0	0	0	0.24749	1	13603	13603		9.3474	0	1	281100	+		22378	11859	14765	14914	30349	30349					0.10345897356080513
VLGAPSSTEL	10	Unmodified	_VLGAPSSTEL_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2640075683594	2	487.263665	972.512776	0.2784	0.00013565	0.072548	3.535E-05	0.35095	0.000171	487.26356582706586	62.927	0.92719	62.927	62.722	63.649	0					72	34	3	0	0	0	0.33099	1	14374	14374		19.257	2.3147	1	928510			22379	4649	14766	14915	30350	30350					0.025420439694244124
VLGGLLWW	8	Unmodified	_VLGGLLWW_					0	0	0		ENST00000478232.1_1_1:28862693-28863283:+|nuORF	ENST00000478232.1_1_1:28862693-28863283:+|nuORF	ENST00000478232.1_1_1:28862693-28863283:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.28363037109375	2	472.273638	942.532724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.769	1	93.769	93.269	94.269	0								0	0	0	0.38822	1	23650	23650		2.8892	0	1				22380	6724	14767	14916	30351	30351					0.059158844907074126
VLGLKFFK	8	Unmodified	_VLGLKFFK_					0	0	0			REV__ENST00000297540.4_1_5:125961755-125961854:+|nuORF	REV__ENST00000297540.4_1_5:125961755-125961854:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.30657958984375	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.804	1	62.876	62.376	63.376	0.072701								0	0	0	0.38822	1	14073	14073		0.79363	0	1		+		22381	11331	14768	14917	30352	30352					0.11805030558889484
VLGVRARC	8	Unmodified	_VLGVRARC_					0	0	0			REV__ENST00000461325.1_1_3:52551001-52552043:+|nuORF	REV__ENST00000461325.1_1_3:52551001-52552043:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.257568359375	2	437.257997	872.501441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.068	1	92.068	91.568	92.568	0								0	0	0	0.38822	1	23134	23134		2.5775	0	1		+		22382	11962	14769	14918	30353	30353					0.06008988184964892
VLGYIYRVSSV	11	Unmodified	_VLGYIYRVSSV_					0	0	0		ENST00000533627.5_1_11:118404537-118405292:+|nuORF;nc|ENSG00000149582|Q86YD3-3|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	ENST00000533627.5_1_11:118404537-118405292:+|nuORF	ENST00000533627.5_1_11:118404537-118405292:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.3561401367188	2	628.355888	1254.69722	-0.39108	-0.00024574	0.16925	0.00010635	-0.22183	-0.00013939	628.8575228520746	41.671	0.22466	41.761	41.644	41.869	0.089764					11	8	2	0	0	0	0.41309	1	7659	7659		1.3295	0.25807	1	41422			22383	3411	14770	14919	30354	30354					0.08006232119964807
VLHEHPDGPVF	11	Unmodified	_VLHEHPDGPVF_					0	0	0		ENST00000396128.8_1_14:45398158-45398206:-|nuORF	ENST00000396128.8_1_14:45398158-45398206:-|nuORF	ENST00000396128.8_1_14:45398158-45398206:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22052001953125	3	416.212017	1245.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.322	1	50.395	49.895	50.895	0.07312								0	0	0	0.33281	1	10278	10278		2.8433	1.5136	1				22384	6339	14771	14920	30355	30355					0.0012391539198688406
VLHFKSEGYND	11	Unmodified	_VLHFKSEGYND_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.87872314453125	3	436.878815	1307.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.92	1	33.997	33.497	34.497	0.076244								0	0	0	0.34096	1	5343	5343		0.40827	0	1				22385	1659	14772	14921	30356	30356					-0.026887096787959308
VLHGILLKK	9	Unmodified	_VLHGILLKK_					0	0	0		tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7129821777344	2	510.850045	1019.68554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.843	1	27.925	27.425	28.425	0.082134								0	0	0	0.29525	1	3536	3536		0	0	1				22386	13740	14773	14922	30357	30357					0.1764807988732855
VLHGILLKK	9	Unmodified	_VLHGILLKK_					0	0	0		tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8734436035156	2	510.850045	1019.68554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.05	1	115.06	114.56	115.56	0.013092								0	0	0	0.29525	1	29254	29254		0	0	1				22387	13740	14773	14922	30358	30358					0.1764807988732855
VLHGLLQSL	9	Unmodified	_VLHGLLQSL_					0	0	0			REV__ENST00000407418.7_1_22:39259662-39259899:-|nuORF	REV__ENST00000407418.7_1_22:39259662-39259899:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2643737792969	2	490.300384	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.657	1	97.698	97.198	98.198	0.040855								0	0	0	0.29303	1	24679	24679		0.45834	0	1		+		22388	11769	14774	14923	30359	30359					0.0960663720258026
VLHPEEEAL	9	Unmodified	_VLHPEEEAL_					0	0	0			REV__ENST00000533104.1_1_1:160252288-160254904:-|nuORF	REV__ENST00000533104.1_1_1:160252288-160254904:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7472534179688	2	518.769114	1035.52368	0.36213	0.00018786	-0.39021	-0.00020243	-0.02808	-1.4567E-05	518.7686588206176	47.879	0.63909	47.879	47.672	48.311	0					34	21	2	0	0	0	0.2446	1	9734	9734		11.64	3.7301	1	109900	+		22389	9904	14775	14924	30360	30360					0.007334463437018712
VLIIGILVF	9	Unmodified	_VLIIGILVF_					0	0	0		ENST00000530434.1_1_11:56457988-56458195:+|nuORF;nc|ENSG00000089063|Q96A57|TMEM230;ENSG00000089063|ENST00000342308|TMEM230	ENST00000530434.1_1_11:56457988-56458195:+|nuORF	ENST00000530434.1_1_11:56457988-56458195:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8347473144531	2	493.836071	985.65759	0.34857	0.00017214	-2.5313	-0.00125	-2.1827	-0.0010779	493.83472898673233	109.65	0.54836	109.66	109.12	109.67	0.017242					93	63	2	0	0	0	0.34646	1	28035	28035		0.6015	0	1	1823500			22390	1026	14776	14925	30361	30361					0.1641875690722827
VLIIGILVF	9	Unmodified	_VLIIGILVF_					0	0	0		ENST00000530434.1_1_11:56457988-56458195:+|nuORF;nc|ENSG00000089063|Q96A57|TMEM230;ENSG00000089063|ENST00000342308|TMEM230	ENST00000530434.1_1_11:56457988-56458195:+|nuORF	ENST00000530434.1_1_11:56457988-56458195:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.8365173339844	2	493.836071	985.65759	0.34869	0.0001722	-2.0685	-0.0010215	-1.7198	-0.00084931	493.83493116986045	109.8	0.36721	109.82	109.77	110.14	0.017235					69	53	2	0	0	0	0.34646	2	28071	28071;28089		0.6015	0	1	1434300			22391	1026	14776	14925	30362;30363	30362					0.1641875690722827
VLIKMKKLKL	10	Unmodified	_VLIKMKKLKL_					0	0	0		ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.16796875	3	405.2858	1212.83557	0.19232	7.7946E-05	-0.90914	-0.00036846	-0.71682	-0.00029052	405.62026303280226	106.51	0.079697	106.51	106.45	106.53	0					9	6	2	0	0	0	0.31857	1	27468	27468		0	0	1	21183			22392	6444	14777	14926	30364	30364					0.2376668383476499
VLIKMKKLKL	10	Unmodified	_VLIKMKKLKL_					0	0	0		ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	405.2858	1212.83557	0.091124	3.6931E-05	-0.26987	-0.00010938	-0.17875	-7.2445E-05	405.62062870572555	106.47	0.051651	106.49	106.47	106.52	0.025711	-0.0062467	0.00038527	NaN	0	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17279			22393	6444	14777	14926							0.2376668383476499
VLILIIIAVKL	11	Unmodified	_VLILIIIAVKL_					0	0	0			REV__tr|U7SND1|U7SND1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01896PE=4SV=1	REV__tr|U7SND1|U7SND1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01896PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.4423217773438	2	604.441235	1206.86792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.91	1	112.93	112.43	113.43	0.013817								0	0	0	0.34125	1	28821	28821		0.30703	0.30703	1		+		22394	13098	14778	14927	30365	30365					0.27275794509409934
VLILVLKRF	9	Unmodified	_VLILVLKRF_					0	0	0		nc|ENSG00000205946|Q6QN14|USP17L6P;ENSG00000250844|ENST00000504209|USP17L18;ENSG00000223443|ENST00000333796|USP17L2;ENSG00000250745|ENST00000506151|USP17L20;ENSG00000249811|ENST00000506414|USP17L21;ENSG00000249104|ENST00000511568|USP17L17;ENSG00000248933|ENST00000511280|USP17L22;ENSG00000248920|ENST00000515566|USP17L19;ENSG00000237038|ENST00000527080|USP17L8;ENSG00000236125|ENST00000526929|USP17L4;ENSG00000235780|ENST00000515574|USP17L27;ENSG00000233136|ENST00000457736|USP17L11;ENSG00000232399|ENST00000429667|USP17L13;ENSG00000232264|ENST00000504481|USP17L24;ENSG00000231637|ENST00000511681|USP17L29;ENSG00000231396|ENST00000417945|USP17L10;ENSG00000231051|ENST00000504543|USP17L28;ENSG00000230549|ENST00000529559|USP17L1;ENSG00000230430|ENST00000509271|USP17L25;ENSG00000229579|ENST00000509660|USP17L26;ENSG00000228856|ENST00000504104|USP17L30;ENSG00000227551|ENST00000415041|USP17L12;ENSG00000227140|ENST00000507227|USP17L5;ENSG00000226430|ENST00000530447|USP17L7;ENSG00000225327|ENST00000530484|USP17L3;ENSG00000223569|ENST00000456464|USP17L15	nc|ENSG00000205946|Q6QN14|USP17L6P	nc|ENSG00000205946|Q6QN14|USP17L6P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.87939453125	2	550.881345	1099.74814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.1	1	113.1	112.6	113.6	0								0	0	0	0.2927	1	28983	28983		0.52476	0	1				22395	5601	14779	14928	30366	30366					0.2022522595548253
VLILVLKRF	9	Unmodified	_VLILVLKRF_					0	0	0		nc|ENSG00000205946|Q6QN14|USP17L6P;ENSG00000250844|ENST00000504209|USP17L18;ENSG00000223443|ENST00000333796|USP17L2;ENSG00000250745|ENST00000506151|USP17L20;ENSG00000249811|ENST00000506414|USP17L21;ENSG00000249104|ENST00000511568|USP17L17;ENSG00000248933|ENST00000511280|USP17L22;ENSG00000248920|ENST00000515566|USP17L19;ENSG00000237038|ENST00000527080|USP17L8;ENSG00000236125|ENST00000526929|USP17L4;ENSG00000235780|ENST00000515574|USP17L27;ENSG00000233136|ENST00000457736|USP17L11;ENSG00000232399|ENST00000429667|USP17L13;ENSG00000232264|ENST00000504481|USP17L24;ENSG00000231637|ENST00000511681|USP17L29;ENSG00000231396|ENST00000417945|USP17L10;ENSG00000231051|ENST00000504543|USP17L28;ENSG00000230549|ENST00000529559|USP17L1;ENSG00000230430|ENST00000509271|USP17L25;ENSG00000229579|ENST00000509660|USP17L26;ENSG00000228856|ENST00000504104|USP17L30;ENSG00000227551|ENST00000415041|USP17L12;ENSG00000227140|ENST00000507227|USP17L5;ENSG00000226430|ENST00000530447|USP17L7;ENSG00000225327|ENST00000530484|USP17L3;ENSG00000223569|ENST00000456464|USP17L15	nc|ENSG00000205946|Q6QN14|USP17L6P	nc|ENSG00000205946|Q6QN14|USP17L6P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8794555664062	2	550.881345	1099.74814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.19	1	113.2	112.7	113.7	0.013817								0	0	0	0.2927	1	28886	28886		0.52476	0.066424	1				22396	5601	14779	14928	30367	30367					0.2022522595548253
VLIQANDLKID	11	Unmodified	_VLIQANDLKID_					0	0	0		nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3571166992188	2	621.358628	1240.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.35	1	104.38	103.88	104.88	0.034004								0	0	0	0.33908	1	26674	26674		1.0715	0.5467	1				22397	720	14780	14929	30368	30368					0.09197910911780127
VLIYPCQCF	9	Unmodified	_VLIYPCQCF_					0	0	0		ENST00000465368.5_1_3:100064894-100074109:+|nuORF	ENST00000465368.5_1_3:100064894-100074109:+|nuORF	ENST00000465368.5_1_3:100064894-100074109:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.27978515625	2	543.261556	1084.50856	0.47039	0.00025554	0.30011	0.00016304	0.7705	0.00041858	543.2615966834295	57.061	0.18991	57.13	57.016	57.206	0.068375					9	6	2	0	0	0	0.2796	1	12347	12347		9.3474	0.75416	1	30978			22398	6631	14781	14930	30369	30369					-0.03031460049510315
VLKCGFWI	8	Unmodified	_VLKCGFWI_					0	0	0			REV__nc|ENSG00000100427|Q15049-2|MLC1	REV__nc|ENSG00000100427|Q15049-2|MLC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.716064453125	2	483.267499	964.520445	0.25762	0.0001245	-0.15207	-7.3488E-05	0.10556	5.1013E-05	483.26739285364783	69.864	0.22951	69.864	69.761	69.991	0					11	7	2	0	0	0	0.35759	1	16402	16402		9.3474	0	1	63413	+		22399	8396	14782	14931	30370	30370					0.036765247559969794
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	419.31549072265625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.115	1	51.185	50.685	51.685	0.069874								0	0	0	0.33952	1	10518	10518		0.77653	0	1				22400	6927	14783	14932	30371	30371					0.3054822610067731
VLKLKTKM	8	Unmodified	_VLKLKTKM_					0	0	0		nc|ENSG00000136108|Q8WWK9-4|CKAP2;nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	nc|ENSG00000136108|Q8WWK9-4|CKAP2	nc|ENSG00000136108|Q8WWK9-4|CKAP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.8166198730469	2	480.817356	959.620159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.242	1	58.242	57.742	58.742	0								0	0	0	0.38822	1	12826	12826		0	0	1				22401	2767	14784	14933	30372	30372					0.1387334236994775
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.3635559082031	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.21	1	117.21	116.71	117.71	0								0	0	0	0.29525	1	29757	29757		0	0	1		+		22402	12793	14785	14934	30373	30373					0.21787018832628746
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.3638610839844	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.91	1	115.93	115.43	116.43	0.013062								0	0	0	0.29525	1	29446	29446		0	0	1		+		22403	12793	14785	14934	30374	30374					0.21787018832628746
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.363525390625	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.56	1	117.58	117.08	118.08	0.013062								0	0	0	0.29525	1	29712	29712		0	0	1		+		22404	12793	14785	14934	30375	30375					0.21787018832628746
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.36370849609375	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.26	1	119.27	118.77	119.77	0.013062								0	0	0	0.29525	1	29980	29980		0	0	1		+		22405	12793	14785	14934	30376	30376					0.21787018832628746
VLKLPFLI	8	Unmodified	_VLKLPFLI_					0	0	0			REV__ENST00000574776.5_1_17:3543500-3558534:+|nuORF	REV__ENST00000574776.5_1_17:3543500-3558534:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.3392639160156	2	471.822964	941.631375	-0.0029243	-1.3798E-06	0.80142	0.00037813	0.79849	0.00037675	471.82160048436464	112.03	0.7081	112.05	111.91	112.62	0.014595					153	84	4	0	0	0	0.3576	1	28596	28596		0.69038	0	1	1169700	+		22406	8028	14786	14935	30377	30377					0.15822487735749746
VLKMLCEWGK	10	Unmodified	_VLKMLCEWGK_					0	0	0		tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.822021484375	2	603.822312	1205.63007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.2	1	103.24	102.74	103.74	0.040916								0	0	0	0.33892	1	26353	26353		1.4819	0	1				22407	13631	14787	14936	30378	30378					0.03548162312995373
VLKQHFYRR	9	Unmodified	_VLKQHFYRR_					0	0	0			REV__ENST00000396051.2_1_4:71840973-71844946:+|nuORF	REV__ENST00000396051.2_1_4:71840973-71844946:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.22100830078125	3	416.243763	1245.70946	0.36036	0.00015	-1.0029	-0.00041747	-0.64259	-0.00026747	416.5778832620647	51.972	0.62481	51.972	51.743	52.368	0					33	21	2	0	0	0	0.25822	1	10982	10982		2.7352	1.4056	1	65921	+		22408	11723	14788	14937	30379	30379					0.0964331337368094
VLKRKPVLS	9	Unmodified	_VLKRKPVLS_					0	0	0		ENST00000262376.10_1_16:4930962-4931145:+|nuORF	ENST00000262376.10_1_16:4930962-4931145:+|nuORF	ENST00000262376.10_1_16:4930962-4931145:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.3528442382812	2	520.352951	1038.69135	-0.035034	-1.823E-05	0.32443	0.00016882	0.2894	0.00015059	520.3529549506109	112.01	1.3237	112.01	111.85	113.17	0					309	153	3	0	0	0	0.3354	1	28702	28702		2.0598	0	1	5419200			22409	5870	14789	14938	30380	30380					0.17355178398975113
VLKRKPVLS	9	Unmodified	_VLKRKPVLS_					0	0	0		ENST00000262376.10_1_16:4930962-4931145:+|nuORF	ENST00000262376.10_1_16:4930962-4931145:+|nuORF	ENST00000262376.10_1_16:4930962-4931145:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.352783203125	2	520.352951	1038.69135	0.23826	0.00012398	0.17276	8.9898E-05	0.41102	0.00021388	520.3528676862109	112.03	1.0199	112.05	111.86	112.88	0.014595					269	118	3	0	0	0	0.3354	1	28569	28569		2.0598	0	1	4361600			22410	5870	14789	14938	30381	30381					0.17355178398975113
VLKSVTTFP	9	Unmodified	_VLKSVTTFP_					0	0	0			REV__MED24|p.E954K|1|0.33|ENSG00000008838|chr17:40019639-40019639|C/T|missense_variant	REV__MED24|p.E954K|1|0.33|ENSG00000008838|chr17:40019639-40019639|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2948913574219	2	496.294768	990.574983	0.422	0.00020943	0.01714	8.5064E-06	0.43914	0.00021794	496.2946693509399	77.569	0.3933	77.569	77.413	77.807	0					24	14	2	0	0	0	0.3182	1	18787	18787		4.3292	0.38484	1	196780	+		22411	12730	14790	14939	30382	30382					0.07931815108429419
VLKYYNNSS	9	Unmodified	_VLKYYNNSS_					0	0	0			REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2737426757812	2	544.274564	1086.53457	0.48578	0.0002644	-1.9157	-0.0010427	-1.4299	-0.00077826	544.2733085638404	101.37	0.41364	101.41	101.23	101.64	0.042656					45	25	2	0	0	0	0.33704	1	25793	25793		1.8442	0.19162	1	91475	+		22412	11083	14791	14940	30383	30383					-0.005231512820046191
VLKYYNNSS	9	Unmodified	_VLKYYNNSS_					0	0	0			REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	544.274564	1086.53457	0.48578	0.0002644	-1.9157	-0.0010427	-1.4299	-0.00077826	544.2733085638404	101.37	0.41364	101.41	101.23	101.64	0.042656	-0.0037089	-0.00014518	NaN	1.8442	45	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91475	+		22413	11083	14791	14940							-0.005231512820046191
VLLFMEGAGLF	11	Unmodified	_VLLFMEGAGLF_					0	0	0			REV__ENSG00000184394|ENST00000641086|OR4N5	REV__ENSG00000184394|ENST00000641086|OR4N5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2435913085938	2	598.822835	1195.63112	0.12394	7.4216E-05	-3.9682	-0.0023762	-3.8442	-0.002302	598.8199302152319	59.699	0.11228	59.771	59.712	59.824	0.072338					7	4	2	0	0	0	0.31013	1	13144	13144		8.7454	0.58988	1	113370	+		22414	10634	14792	14941	30384	30384					0.04112699953589072
VLLLAEKSNF	10	Unmodified	_VLLLAEKSNF_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7874755859375	2	567.331882	1132.64921	0.25245	0.00014322	-3.6656	-0.0020796	-3.4131	-0.0019364	567.3296110699059	82.951	0.45919	82.973	82.735	83.194	0.021744					20	15	2	0	0	0	0.31456	1	20221	20221		10.074	0	1	105840	+		22415	7790	14793	14942	30385	30385					0.0881915819995811
VLLLIIILLIT	11	Unmodified	_VLLLIIILLIT_					0	0	0		sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.9496459960938	2	618.948893	1235.88323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.527	1	43.616	43.116	44.116	0.088924								0	0	0	0.34212	1	8231	8231		0	0	1				22416	13385	14794	14943	30386	30386					0.2747266130661501
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.30279541015625	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.677	1	61.751	61.251	62.251	0.073421								0	0	0	0.34188	1	13730	13730		0.08335	0.08335	1		+		22417	10002	14795	14944	30387	30387					0.25807349203978447
VLLLLLLFFI	10	Unmodified	_VLLLLLLFFI_					0	0	0		nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.4118041992188	2	602.409404	1202.80425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.12	1	114.12	113.62	114.62	0								0	0	0	0.34018	1	29170	29170		0	0	1				22418	1657	14796	14945	30388	30388					0.21096434072342163
VLLLLLLFFI	10	Unmodified	_VLLLLLLFFI_					0	0	0		nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.4112548828125	2	602.409404	1202.80425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.24	1	115.25	114.75	115.75	0.013092								0	0	0	0.34018	1	29303	29303		0	0	1				22419	1657	14796	14945	30389	30389					0.21096434072342163
VLLLLVLSL	9	Unmodified	_VLLLLVLSL_					0	0	0		ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.8480529785156	2	491.849179	981.683805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.87	1	112.87	112.37	113.37	0								0	0	0	0.2927	1	28929	28929		0.52476	0	1				22420	4303	14797	14946	30390	30390					0.19223026078702787
VLLLLVLSL	9	Unmodified	_VLLLLVLSL_					0	0	0		ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.8476257324219	2	491.849179	981.683805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.15	1	113.15	112.65	113.65	0								0	0	0	0.2927	1	28996	28996		0.52476	0	1				22421	4303	14797	14946	30391	30391					0.19223026078702787
VLLTAPPVLPS	11	Unmodified	_VLLTAPPVLPS_					0	0	0			REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8303833007812	2	553.844625	1105.6747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.06	1	86.085	85.585	86.585	0.025169								0	0	0	0.32709	1	21150	21150		5.2969	1.3525	1		+		22422	9097	14798	14947	30392	30392					0.12608632722390212
VLLVLEDEDP	10	Unmodified	_VLLVLEDEDP_					0	0	0		nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5;ENSG00000240764|ENST00000252087|PCDHGC5	nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.3026123046875	2	571.302987	1140.59142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.24	1	117.25	116.75	117.75	0.013062								0	0	0	0.33979	1	29661	29661		0.45834	0	1				22423	5644	14799	14948	30393	30393					0.0267485148385731
VLLVLMPPMF	10	Unmodified	_VLLVLMPPMF_					0	0	0		ENSG00000176555|ENST00000319988|OR4S1	ENSG00000176555|ENST00000319988|OR4S1	ENSG00000176555|ENST00000319988|OR4S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.3350219726562	2	580.334524	1158.6545	0.52793	0.00030638	0.16176	9.3874E-05	0.68969	0.00040025	580.334598300521	60.693	1.1417	60.693	60.335	61.477	0					131	40	4	0	0	0	0.3939	1	13718	13718		12.532	1.732	1	3292200			22424	4666	14800	14949	30394	30394					0.08151422466562508
VLLVLYQKHFL	11	Unmodified	_VLLVLYQKHFL_					0	0	0		ENST00000272298.11_1_2:47387407-47387581:-|nuORF	ENST00000272298.11_1_2:47387407-47387581:-|nuORF	ENST00000272298.11_1_2:47387407-47387581:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.2831115722656	3	458.283224	1371.82784	0.16374	7.5038E-05	-0.14423	-6.6097E-05	0.019509	8.9409E-06	458.2829745910371	51.555	0.28584	51.625	51.424	51.71	0.069874					14	10	2	0	0	0	0.40738	1	10663	10663		2.6312	0.72486	1	44262			22425	5914	14801	14950	30395	30395					0.15680247838849937
VLLWFFSS	8	Unmodified	_VLLWFFSS_					0	0	0			REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7716369628906	2	499.770929	997.527304	0.41923	0.00020952	0.0014059	7.0264E-07	0.42064	0.00021022	499.77094176830064	96.469	0.42651	96.469	96.318	96.745	0					32	19	2	0	0	0	0.53494	1	24462	24462		4.756	0	1	303530	+		22426	12792	14802	14951	30396	30396					0.02844160908239246
VLMENQLL	8	Unmodified	_VLMENQLL_					0	0	0		ENST00000416132.5_1_2:3687900-3691705:+|nuORF	ENST00000416132.5_1_2:3687900-3691705:+|nuORF	ENST00000416132.5_1_2:3687900-3691705:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2659912109375	2	480.265153	958.515753	0.24696	0.0001186	0.45279	0.00021746	0.69974	0.00033606	480.265318439739	99.288	0.31158	99.331	99.208	99.519	0.042831					25	20	2	0	0	0	0.53557	1	25169	25169		4.3292	0	1	59319			22427	6422	14803	14952	30397	30397					0.03483595822592633
VLNAPLPQL	9	Unmodified	_VLNAPLPQL_					0	0	0		ENST00000480424.6_1_16:630665-633032:+|nuORF	ENST00000480424.6_1_16:630665-633032:+|nuORF	ENST00000480424.6_1_16:630665-633032:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.795654296875	2	482.794935	963.575317	0.012667	6.1156E-06	1.096	0.00052915	1.1087	0.00053526	482.7957999694904	109.88	0.29149	109.89	109.81	110.1	0.017242					80	42	2	0	0	0	0.3182	1	28091	28091		4.3292	0	1	1378100			22428	6744	14804	14953	30398	30398					0.09207234828284072
VLNAPLPQL	9	Unmodified	_VLNAPLPQL_					0	0	0		ENST00000480424.6_1_16:630665-633032:+|nuORF	ENST00000480424.6_1_16:630665-633032:+|nuORF	ENST00000480424.6_1_16:630665-633032:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	482.794935	963.575317	-0.31597	-0.00015255	1.2077	0.00058307	0.89172	0.00043052	482.79591803926684	109.89	0.79562	109.89	109.76	110.56	0	-0.002118	5.5539E-05	NaN	4.3292	205	118	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2364000			22429	6744	14804	14953							0.09207234828284072
VLNAPLPQL	9	Unmodified	_VLNAPLPQL_					0	0	0		ENST00000480424.6_1_16:630665-633032:+|nuORF	ENST00000480424.6_1_16:630665-633032:+|nuORF	ENST00000480424.6_1_16:630665-633032:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	482.794935	963.575317	0.012667	6.1156E-06	1.096	0.00052915	1.1087	0.00053526	482.7957999694904	109.88	0.29149	109.89	109.81	110.1	0.017242	0.002118	-5.2304E-05	NaN	4.3292	80	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1378100			22430	6744	14804	14953							0.09207234828284072
VLNFGSCTUPP	11	Unmodified	_VLNFGSCTUPP_					0	0	0		ENSG00000197406|ENST00000510508|DIO3	ENSG00000197406|ENST00000510508|DIO3	ENSG00000197406|ENST00000510508|DIO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2308349609375	2	593.229228	1184.4439	0.29624	0.00017574	1.8079	0.0010725	2.1042	0.0012483	593.2302239149335	56.16	0.88994	56.16	55.915	56.805	0					69	32	4	0	0	0	0.35693	1	12276	12276		0	0	0	992750			22431	5295	14805	14954	30399	30399					-0.140941871568657
VLNLLSDAP	9	Unmodified	_VLNLLSDAP_					0	0	0			REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2559509277344	2	471.26875	940.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.253	1	36.335	35.835	36.835	0.081715								0	0	0	0.23452	1	6042	6042		12.532	0.89125	1		+		22432	7689	14806	14955	30400	30400					0.05030651694664812
VLNQGLRN	8	Unmodified	_VLNQGLRN_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.26446533203125	2	457.264333	912.514114	0.43652	0.0001996	-0.24791	-0.00011336	0.18861	8.6244E-05	457.2641145547303	76.292	2.7408	76.292	76.041	78.782	0					250	108	3	0	0	0	0.53494	1	18564	18564		4.756	0.42677	1	989850			22433	2205	14807	14956	30401	30401					0.054357228488470355
VLPARYFYI	9	Unmodified	_VLPARYFYI_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3235473632812	2	571.32386	1140.63317	0.51626	0.00029495	-0.38418	-0.00021949	0.13208	7.5458E-05	571.3234474008383	67.292	0.68616	67.292	67.039	67.725	0					60	25	3	0	0	0	0.1182	3	15616	15569;15616;15670		28.487	19.104	1	550540			22434	2700	14808	14957	30402;30403;30404	30403					0.06847496753721316
VLPARYFYI	9	Unmodified	_VLPARYFYI_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.3239135742188	2	571.32386	1140.63317	0.7014	0.00040073	-0.56606	-0.0003234	0.13535	7.7326E-05	571.3233048170849	67.201	0.94556	67.266	67.101	68.046	0.065071					65	32	3	0	0	0	0.12809	2	15409	15409;15467		26.884	16.06	1	482330			22435	2700	14808	14957	30405;30406	30405					0.06847496753721316
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(71)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7650146484375	2	559.764986	1117.51542	0.63102	0.00035323	0.25043	0.00014018	0.88145	0.00049341	560.2663808224938	92.41	0.57679	92.41	92.164	92.741	0					52	21	3	0	0	0	0.0087214	1	23253	23253		71.134	57.626	1	158130			22436	1351	14809	14958	30407	30407		81			-0.03863823897268048
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(46)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7654418945312	2	559.764986	1117.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.88	1	93.88	93.38	94.38	0								0	0	0	0.058966	1	23683	23683		46.021	27.875	1				22437	1351	14809	14958	30408	30408		81			-0.03863823897268048
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(55)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.765869140625	2	559.764986	1117.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.064	1	94.064	93.564	94.564	0								0	0	0	0.035211	1	23739	23739		54.774	25.692	1				22438	1351	14809	14958	30409	30409		81			-0.03863823897268048
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(46)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7642211914062	2	559.764986	1117.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.201	1	94.201	93.701	94.701	0								0	0	0	0.058966	1	23781	23781		46.021	27.875	1				22439	1351	14809	14958	30410	30410		81			-0.03863823897268048
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(46)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7112426757812	2	559.764986	1117.51542	0.55294	0.00030952	-0.60652	-0.00033951	-0.053577	-2.9991E-05	559.7644027928432	91.804	0.48617	91.804	91.678	92.164	0					22	17	2	0	0	0	0.090621	1	23062	23062		46.021	27.875	1	76796			22440	1351	14809	14958	30411	30411		81			-0.03863823897268048
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(64)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7642822265625	2	559.764986	1117.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.817	1	93.855	93.355	94.355	0.03788								0	0	0	0.017425	1	23506	23506		64.236	28.109	1				22441	1351	14809	14958	30412	30412		81			-0.03863823897268048
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(64)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7652587890625	2	559.764986	1117.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.971	1	94.01	93.51	94.51	0.038086								0	0	0	0.017425	1	23554	23554		64.236	28.109	1				22442	1351	14809	14958	30413	30413		81			-0.03863823897268048
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(64)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7655639648438	2	559.764986	1117.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.132	1	94.17	93.67	94.67	0.038086								0	0	0	0.017425	1	23602	23602		64.236	40.216	1				22443	1351	14809	14958	30414	30414		81			-0.03863823897268048
VLPDMFFSF	9	Oxidation (M)	_VLPDM(Oxidation (M))FFSF_		VLPDM(1)FFSF		VLPDM(46)FFSF	0	0	1		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.765625	2	559.764986	1117.51542	0.64913	0.00036336	0.21179	0.00011855	0.86091	0.00048191	559.7646859465617	92.452	0.64922	92.488	92.128	92.777	0.03653					47	22	3	0	0	0	0.090621	1	23063	23063		46.021	22	1	167830			22444	1351	14809	14958	30415	30415		81			-0.03863823897268048
VLPDMFFSF	9	Unmodified	_VLPDMFFSF_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7686767578125	2	551.767529	1101.5205	0.46866	0.00025859	-0.1348	-7.4376E-05	0.33386	0.00018421	551.767466315195	101.12	0.4977	101.12	100.91	101.4	0					41	27	2	0	0	0	0.27332	1	25870	25870		10.074	2.1638	1	71083			22445	1351	14809	14959	30416	30416					-0.0261952003463648
VLPDMFFSF	9	Unmodified	_VLPDMFFSF_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.76806640625	2	551.767529	1101.5205	0.61656	0.0003402	-0.39061	-0.00021553	0.22595	0.00012467	551.767496450734	100.99	0.45737	101.03	100.85	101.31	0.042839					37	27	2	0	0	0	0.14091	1	25690	25690		25.399	4.9457	1	88927			22446	1351	14809	14959	30417	30417					-0.0261952003463648
VLPDMFFSF	9	Unmodified	_VLPDMFFSF_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	551.767529	1101.5205	0.61656	0.0003402	-0.39061	-0.00021553	0.22595	0.00012467	551.767496450734	100.99	0.45737	101.03	100.85	101.31	0.042839	-0.046438	-0.00011691	NaN	25.399	37	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88927			22447	1351	14809	14959							-0.0261952003463648
VLPEAIISF	9	Unmodified	_VLPEAIISF_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.7893371582031	2	494.789318	987.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.994	1	89.994	89.494	90.494	0								0	0	0	0.084773	1	22500	22500		37.974	0	1		+		22448	11088	14810	14960	30418	30418					0.06980412734151287
VLPEAIISF	9	Unmodified	_VLPEAIISF_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.78924560546875	2	494.789318	987.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.013	1	90.013	89.513	90.513	0								0	0	0	0.084773	1	22506	22506		37.974	0	1		+		22449	11088	14810	14960	30419	30419					0.06980412734151287
VLPEAIISF	9	Unmodified	_VLPEAIISF_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.789306640625	2	494.789318	987.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.132	1	90.132	89.632	90.632	0								0	0	0	0.084773	1	22543	22543		37.974	0	1		+		22450	11088	14810	14960	30420	30420					0.06980412734151287
VLPEAIISF	9	Unmodified	_VLPEAIISF_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7891845703125	2	494.789318	987.564084	0.19652	9.7236E-05	-0.13164	-6.5132E-05	0.064885	3.2104E-05	494.78920160418454	90.006	0.65441	90.04	89.822	90.476	0.034065					39	26	2	0	0	0	0.074645	2	22325	22325;22370		37.974	0	1	930490	+		22451	11088	14810	14960	30421;30422	30421					0.06980412734151287
VLPEHLILV	9	Unmodified	_VLPEHLILV_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.8265380859375	2	516.826235	1031.63792	0.092025	4.7561E-05	0.4609	0.00023821	0.55293	0.00028577	516.8262312035232	73.158	0.60283	73.158	73.027	73.63	0					36	21	3	0	0	0	0.16036	1	17416	17416		23.148	0	1	614990			22452	1268	14811	14961	30423	30423					0.12336380896454102
VLPEHLILV	9	Unmodified	_VLPEHLILV_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.8262939453125	2	516.826235	1031.63792	0.19711	0.00010187	0.55645	0.00028759	0.75357	0.00038946	516.8262821168868	73.2	0.43317	73.252	73.008	73.441	0.052574					31	16	3	0	0	0	0.16036	2	17190	17190;17240		23.148	0	1	777110			22453	1268	14811	14961	30424;30425	30424					0.12336380896454102
VLPHFNVLF	9	Unmodified	_VLPHFNVLF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.8136596679688	2	543.310752	1084.60695	0.37022	0.00020115	0.45755	0.00024859	0.82777	0.00044974	543.3106971255029	76.444	0.25124	76.444	76.331	76.582	0					20	8	3	0	0	0	0.026569	2	18381	18381;18405		53.576	25.402	1	185850			22454	1346	14812	14962	30426;30427	30426					0.06803227582213367
VLPHFNVLF	9	Unmodified	_VLPHFNVLF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.3107299804688	2	543.310752	1084.60695	0.42112	0.0002288	0.33685	0.00018301	0.75796	0.00041181	543.3108060799983	76.389	0.24628	76.428	76.332	76.578	0.03923					15	8	2	0	0	0	0.1182	1	18219	18219		28.487	13.905	1	364100			22455	1346	14812	14962	30428	30428					0.06803227582213367
VLPIPFPSF	9	Unmodified	_VLPIPFPSF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.794677734375	2	508.794404	1015.57425	0.52294	0.00026607	-0.067994	-3.4595E-05	0.45495	0.00023148	508.79428215206036	98.21	0.38486	98.252	98.077	98.462	0.041939					33	18	2	0	0	0	0.083504	2	24848	24848;24876		36.044	17.909	1	118890			22456	4787	14813	14963	30429;30430	30429					0.06709020459379644
VLPKKGWLLFF	11	Unmodified	_VLPKKGWLLFF_					0	0	0		ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF	ENST00000381120.7_1_13:28014569-28024670:-|nuORF	ENST00000381120.7_1_13:28014569-28024670:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2785339355469	3	449.944431	1346.81146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.847	1	75.847	75.347	76.347	0								0	0	0	0.32091	1	18194	18194		7.4771	2.0744	1				22457	6292	14814	14964	30431	30431					0.15193166672725056
VLPKKGWLLFF	11	Unmodified	_VLPKKGWLLFF_					0	0	0		ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF	ENST00000381120.7_1_13:28014569-28024670:-|nuORF	ENST00000381120.7_1_13:28014569-28024670:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.9447326660156	3	449.944431	1346.81146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.734	1	75.778	75.278	76.278	0.044037								0	0	0	0.3112	1	18002	18002		10.899	3.4219	1				22458	6292	14814	14964	30432	30432					0.15193166672725056
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.8601684570312	2	536.860078	1071.7056	0.53169	0.00028544	-0.031961	-1.7158E-05	0.49973	0.00026828	536.8599792812198	55.585	0.77591	55.585	55.318	56.094	0					79	26	4	0	0	0	0.0084662	2	11995	11995;12045		71.922	23.576	1	1613700			22459	5319	14815	14965	30433;30434	30433					0.17261830827260383
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.8602905273438	2	536.860078	1071.7056	0.61371	0.00032948	-0.010574	-5.677E-06	0.60314	0.0003238	536.8599496390682	55.524	0.7389	55.589	55.353	56.092	0.065128					71	26	4	0	0	0	0.02293	2	11892	11845;11892		56.177	16.22	1	1428800			22460	5319	14815	14965	30435;30436	30436					0.17261830827260383
VLPKTERLRRV	11	Unmodified	_VLPKTERLRRV_					0	0	0			REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF	REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.29241943359375	3	456.292894	1365.85685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.741	1	37.741	37.241	38.241	0								0	0	0	0.34212	1	6612	6612		0	0	1		+		22461	12141	14816	14966	30437	30437					0.18855785187793117
VLPNRPFGLF	10	Unmodified	_VLPNRPFGLF_					0	0	0		ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.3348999023438	2	580.334759	1158.65496	0.52793	0.00030638	-0.24232	-0.00014063	0.28561	0.00016575	580.334598300521	60.693	1.1417	60.693	60.335	61.477	0					131	40	4	0	0	0	0.16299	4	13532	13532;13580;13624;13669		37.974	19.839	1	3292200			22462	347	14817	14967	30438;30439;30440;30441	30438					0.08198301502261529
VLPNRPFGLF	10	Unmodified	_VLPNRPFGLF_					0	0	0		ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3348999023438	2	580.334759	1158.65496	0.39842	0.00023122	-0.12297	-7.1363E-05	0.27546	0.00015986	580.3346523585764	60.588	1.2055	60.661	60.263	61.469	0.073421					137	42	4	0	0	0	0.21218	5	13404	13356;13404;13445;13493;13543		32.305	30.637	1	4168900			22463	347	14817	14967	30442;30443;30444;30445;30446	30443					0.08198301502261529
VLPQRFPQF	9	Unmodified	_VLPQRFPQF_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7750244140625	2	566.319109	1130.62366	0.1387	7.8548E-05	-0.38717	-0.00021926	-0.24847	-0.00014071	566.3192180345427	59.531	0.33288	59.603	59.379	59.712	0.072338					16	12	2	0	0	0	0.2298	1	13058	13058		16.942	0	1	132900			22464	895	14818	14968	30447	30447					0.06357728468174173
VLPSWPTVT	9	Unmodified	_VLPSWPTVT_					0	0	0		ENST00000321265.9_1_1:27272697-27272868:+|nuORF	ENST00000321265.9_1_1:27272697-27272868:+|nuORF	ENST00000321265.9_1_1:27272697-27272868:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7903137207031	2	500.279118	998.543683	0.25981	0.00012998	0.088785	4.4417E-05	0.3486	0.0001744	500.27915810409087	89.279	0.4214	89.312	89.088	89.509	0.032257					18	15	2	0	0	0	0.25979	2	22107	22107;22179		11.64	0.3479	1	76175			22465	6032	14819	14969	30448;30449	30448					0.04435242074339385
VLPSWPTVT	9	Unmodified	_VLPSWPTVT_					0	0	0		ENST00000321265.9_1_1:27272697-27272868:+|nuORF	ENST00000321265.9_1_1:27272697-27272868:+|nuORF	ENST00000321265.9_1_1:27272697-27272868:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	500.279118	998.543683	0.23176	0.00011594	0.11406	5.7061E-05	0.34582	0.000173	500.2791541757336	89.375	0.40645	89.375	89.098	89.505	0	0.031597	1.4452E-05	NaN	11.64	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83637			22466	6032	14819	14969							0.04435242074339385
VLPVIYELI	9	Unmodified	_VLPVIYELI_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3228759765625	2	529.828443	1057.64233	0.54946	0.00029112	-0.2049	-0.00010856	0.34456	0.00018256	529.8283720539303	99.509	0.21703	99.551	99.369	99.586	0.042839					20	14	2	0	0	0	0.17247	1	25231	25231		21.747	9.2151	1	91233			22467	4978	14820	14970	30450	30450					0.11581845319392414
VLPVRYFYL	9	Unmodified	_VLPVRYFYL_					0	0	0		ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.8054809570312	2	585.33951	1168.66447	0.27443	0.00016064	-0.73729	-0.00043157	-0.46286	-0.00027093	585.3389842317372	73.379	0.74532	73.379	73.174	73.92	0					55	26	3	0	0	0	0.20004	1	17466	17466		23.148	10.617	1	1231900			22468	4737	14821	14971	30451	30451					0.08688069787785935
VLPVRYFYL	9	Unmodified	_VLPVRYFYL_					0	0	0		ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8053588867188	2	585.33951	1168.66447	0.5918	0.0003464	-1.0428	-0.00061038	-0.45098	-0.00026397	585.3387454007812	73.376	0.65206	73.428	73.178	73.831	0.052574					60	25	3	0	0	0	0.20004	1	17283	17283		23.148	12.324	1	1027700			22469	4737	14821	14971	30452	30452					0.08688069787785935
VLPYYFPTL	9	Unmodified	_VLPYYFPTL_					0	0	0		ENST00000280904.10_2_18:28671106-28672218:-|nuORF	ENST00000280904.10_2_18:28671106-28672218:-|nuORF	ENST00000280904.10_2_18:28671106-28672218:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.2949829101562	2	556.804968	1111.59538	0.26895	0.00014975	0.012065	6.7179E-06	0.28101	0.00015647	556.8051151388274	90.352	0.43677	90.386	90.143	90.58	0.034065					30	17	3	0	0	0	0.05573	1	22458	22458		42.095	11.87	1	214340			22470	5929	14822	14972	30453	30453					0.04404985768246661
VLPYYLTI	8	Unmodified	_VLPYYLTI_					0	0	0		ENST00000568578.5_1_X:135956303-135956645:-|nuORF	ENST00000568578.5_1_X:135956303-135956645:-|nuORF	ENST00000568578.5_1_X:135956303-135956645:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2864685058594	2	491.286411	980.55827	0.38206	0.0001877	0.21612	0.00010618	0.59819	0.00029388	491.2865671130024	96.497	0.38928	96.497	96.332	96.722	0					23	17	2	0	0	0	0.54081	1	24488	24488		0.79363	0	1	73787			22471	7184	14823	14973	30454	30454					0.06721314222477304
VLQATNPNL	9	Unmodified	_VLQATNPNL_					0	0	0		ENSG00000174460|ENST00000310164|ZCCHC12	ENSG00000174460|ENST00000310164|ZCCHC12	ENSG00000174460|ENST00000310164|ZCCHC12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.272216796875	2	485.271824	968.529095	-0.068825	-3.3399E-05	0.36367	0.00017648	0.29484	0.00014308	485.2719628135694	50.387	0.39026	50.387	50.234	50.624	0					18	13	2	0	0	0	0.29105	1	10439	10439		7.9102	2.1497	1	65326			22472	4586	14824	14974	30455	30455					0.0435716992617472
VLQQHLQQ	8	Unmodified	_VLQQHLQQ_					0	0	0			REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9	REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7821044921875	2	497.277441	992.540328	-0.026145	-1.3001E-05	3.345	0.0016634	3.3189	0.0016504	497.2776277982931	31.265	0.60154	31.265	30.951	31.552	0					69	28	4	0	0	0	0.53345	1	4657	4657		5.7604	0	1	27223	+		22473	9226	14825	14975	30456	30456					0.04375992020322883
VLRIMMPAE	9	Unmodified	_VLRIMMPAE_					0	0	0			REV__nc|ENSG00000168079|Q6ZMJ2-4|SCARA5	REV__nc|ENSG00000168079|Q6ZMJ2-4|SCARA5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7218017578125	2	530.288105	1058.56166	0.091369	4.8452E-05	0.032863	1.7427E-05	0.12423	6.5879E-05	530.7894748661041	33.903	0.18657	33.979	33.901	34.088	0.076206					11	7	2	0	0	0	0.25875	1	5357	5357		1.8442	1.1539	1	10907	+		22474	10143	14826	14976	30457	30457					0.034719177331453466
VLRKKEER	8	Unmodified	_VLRKKEER_					0	0	0		ENST00000348165.9_1_7:156931958-156961760:+|nuORF	ENST00000348165.9_1_7:156931958-156961760:+|nuORF	ENST00000348165.9_1_7:156931958-156961760:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3275756835938	2	529.327465	1056.64038	-0.35259	-0.00018664	-0.64408	-0.00034093	-0.99667	-0.00052757	529.3273174929094	18.181	0.23817	18.181	18.073	18.311	0					44	29	2	0	0	0	0.53926	1	1063	1063		1.8442	0	1	27526			22475	6104	14827	14977	30458	30458					0.11432229354113588
VLRLRLKL	8	Unmodified	_VLRLRLKL_					0	0	0			REV__ENSG00000214338|ENST00000525778|SOGA3	REV__ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.86376953125	2	505.863486	1009.71242	0.21526	0.00010889	-0.55098	-0.00027872	-0.33572	-0.00016983	505.8630452646201	112.02	0.21529	112.03	111.92	112.14	0.014595					40	28	2	0	0	0	0.54199	1	28537	28537		0	0	1	670960	+		22476	11001	14828	14978	30459	30459					0.20795188498493644
VLRRLVLWFFL	11	Unmodified	_VLRRLVLWFFL_					0	0	0			REV__ENSG00000075790|ENST00000005259|BCAP29	REV__ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.9743347167969	3	487.974614	1460.90201	0.14475	7.0635E-05	0.06436	3.1406E-05	0.20911	0.00010204	487.97463011643987	106.42	0.47654	106.45	106.27	106.75	0.025711					109	50	3	0	0	0	0.4185	1	27277	27277		0.094841	0	1	166470	+		22477	8201	14829	14979	30460	30460					0.1899963572100205
VLRRRRKKL	9	Unmodified	_VLRRRRKKL_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.8416748046875	2	612.928015	1223.84148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.606	1	56.672	56.172	57.172	0.066452								0	0	0	0.29525	1	12190	12190		0	0	1				22478	2165	14830	14980	30461	30461					0.23850963181303086
VLSARSSRV	9	Unmodified	_VLSARSSRV_					0	0	0		ENST00000274793.11_1_6:46690657-46703025:-|nuORF	ENST00000274793.11_1_6:46690657-46703025:-|nuORF	ENST00000274793.11_1_6:46690657-46703025:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.79144287109375	2	487.790715	973.566878	0.2243	0.00010941	0.13584	6.6264E-05	0.36015	0.00017568	487.7906907049716	78.727	3.2748	78.727	77.685	80.959	0					178	113	3	0	0	0	0.31086	2	19587	19587;19638		5.2969	1.3525	1	978190			22479	5922	14831	14981	30462;30463	30462					0.07903680911658739
VLSARSSRV	9	Unmodified	_VLSARSSRV_					0	0	0		ENST00000274793.11_1_6:46690657-46703025:-|nuORF	ENST00000274793.11_1_6:46690657-46703025:-|nuORF	ENST00000274793.11_1_6:46690657-46703025:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7908020019531	2	487.790715	973.566878	0.2262	0.00011034	0.094244	4.5971E-05	0.32045	0.00015631	487.7907044487439	78.774	2.9857	78.804	78.021	81.007	0.030159					180	105	4	0	0	0	0.32614	2	18892	18892;18941		3.2813	3.2813	1	1403600			22480	5922	14831	14981	30464;30465	30464					0.07903680911658739
VLSKLTVMAP	10	Unmodified	_VLSKLTVMAP_					0	0	0		chr8:127185770-127187785|267|13.44|0.49|4.77|-|0|CASC19,CASC19|1	chr8:127185770-127187785|267|13.44|0.49|4.77|-|0|CASC19,CASC19|1	chr8:127185770-127187785|267|13.44|0.49|4.77|-|0|CASC19,CASC19|1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.2864990234375	2	529.817553	1057.62055	-0.23989	-0.0001271	0.21422	0.0001135	-0.025673	-1.3602E-05	529.8177498617266	40.507	0.31496	40.507	40.341	40.656	0					18	10	2	0	0	0	0.31803	1	7412	7412		3.2813	1.4371	1	22984			22481	182	14832	14982	30466	30466					0.09404717299162257
VLSLFPIASW	10	Unmodified	_VLSLFPIASW_					0	0	0		ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2982177734375	2	566.823692	1131.63283	0.46941	0.00026607	-0.31291	-0.00017737	0.15649	8.8704E-05	566.8232965347745	99.298	0.55517	99.341	99.014	99.57	0.042831					34	25	2	0	0	0	0.44246	1	25117	25117		6.2058	1.8765	1	106590			22482	1057	14833	14983	30467	30467					0.07228077033823865
VLSLVLFIA	9	Unmodified	_VLSLVLFIA_					0	0	0		ENST00000284006.10_1_19:34305159-34305372:+|nuORF	ENST00000284006.10_1_19:34305159-34305372:+|nuORF	ENST00000284006.10_1_19:34305159-34305372:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.8174133300781	2	487.817879	973.621205	0.22327	0.00010892	-0.23315	-0.00011373	-0.0098763	-4.8178E-06	487.81757109125294	103.73	0.082626	103.77	103.71	103.79	0.03791					8	6	2	0	0	0	0.35102	1	26509	26509		0	0	1	72809			22483	5936	14834	14984	30468	30468					0.13333880010497978
VLSNVEVTL	9	Unmodified	_VLSNVEVTL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2818908691406	2	487.281857	972.549162	0.024766	1.2068E-05	0.073769	3.5946E-05	0.098535	4.8014E-05	487.2818002937504	50.139	0.52601	50.139	49.85	50.376	0					48	18	3	0	0	0	0.16392	1	10393	10393		22.736	2.3217	1	393770			22484	5272	14835	14985	30469	30469					0.06178920866148019
VLSWAFWPF	9	Unmodified	_VLSWAFWPF_					0	0	0		ENST00000551111.1_1_12:50024390-50026982:+|nuORF	ENST00000551111.1_1_12:50024390-50026982:+|nuORF	ENST00000551111.1_1_12:50024390-50026982:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.3085327148438	2	576.797478	1151.5804	0.53579	0.00030904	-0.4846	-0.00027952	0.051192	2.9528E-05	576.7970426765911	68.033	0.60901	68.097	67.845	68.454	0.063507					33	22	2	0	0	0	0.25174	1	15674	15674		7.2892	1.0834	1	73188			22485	7100	14836	14986	30470	30470					0.010675386908815199
VLSYGRELLA	10	Unmodified	_VLSYGRELLA_					0	0	0			REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.3156127929688	2	560.821681	1119.62881	0.52076	0.00029205	-4.311	-0.0024177	-3.7902	-0.0021256	561.3217148760283	68.856	0.57439	68.856	68.558	69.132	0					57	21	4	0	0	0	0.28878	1	16055	16055		25.399	9.5521	1	465870	+		22486	12447	14837	14987	30471	30471					0.07377987540144204
VLTDMEDL	8	Unmodified	_VLTDMEDL_					0	0	0			REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.2243347167969	2	468.223151	934.431749	0.71722	0.00033582	-0.10323	-4.8335E-05	0.61399	0.00028748	468.2237909670766	81.116	0.87638	81.116	80.813	81.69	0					94	29	5	0	0	0	0.53423	1	19818	19818		5.2307	0	1	1353800	+		22487	13305	14838	14988	30472	30472					-0.03808980064968637
VLTETSAE	8	Unmodified	_VLTETSAE_					0	0	0			REV__ENSG00000164741|ENST00000276297|DLC1	REV__ENSG00000164741|ENST00000276297|DLC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.2147216796875	2	425.21364	848.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.071	1	97.111	96.611	97.611	0.040855								0	0	0	0.38822	1	24501	24501		2.3027	0	1		+		22488	10004	14839	14989	30473	30473					-0.017541933643656193
VLTFRDVAVEF	11	Unmodified	_VLTFRDVAVEF_					0	0	0		ENSG00000234444|ENST00000423484|ZNF736;ENSG00000214652|ENST00000456806|ZNF727	ENSG00000234444|ENST00000423484|ZNF736	ENSG00000234444|ENST00000423484|ZNF736	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	431.881103515625	3	432.571322	1294.69214	0.028346	1.2262E-05	0.83873	0.00036281	0.86707	0.00037507	432.57168095280633	44.01	1.0331	44.01	43.179	44.212	0					50	36	2	0	0	0	0.31089	1	8542	8542		1.2148	0	1	61510			22489	5571	14840	14990	30474	30474					0.05657928257369349
VLTFRLNY	8	Unmodified	_VLTFRLNY_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3;TMTC3|p.P277Lfs*5|1|0.27|ENSG00000139324|chr12:88166361-88166361|C/-|frameshift_variant	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8131713867188	2	513.292559	1024.57057	0.39596	0.00020324	0.25563	0.00013121	0.65159	0.00033446	513.292519777062	67.841	0.22663	67.841	67.794	68.021	0					11	8	2	0	0	0	0.3576	1	15794	15794		4.3292	0	1	59395			22490	2966	14841	14991	30475	30475					0.05926350685513171
VLTGGIDMGFW	11	Unmodified	_VLTGGIDMGFW_					0	0	0			REV__nc|ENSG00000152782|Q8TE04-3|PANK1	REV__nc|ENSG00000152782|Q8TE04-3|PANK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8563842773438	2	598.294442	1194.57433	0.27169	0.00016255	-0.60763	-0.00036354	-0.33594	-0.00020099	598.2949306050754	86.284	0.19508	86.309	86.164	86.359	0.025169					7	5	2	0	0	0	0.31001	1	21229	21229		1.1933	0	1	48211	+		22491	8870	14842	14992	30476	30476					-0.015173476029303856
VLTSVKKK	8	Unmodified	_VLTSVKKK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16553955-16554369:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.8047790527344	2	451.805303	901.596052	0.17361	7.844E-05	-0.64306	-0.00029054	-0.46944	-0.0002121	451.8048348750026	112.4	0.65504	112.42	112.21	112.87	0.014595					211	72	3	0	0	0	0.54097	1	28743	28743		0.69038	0	1	4242900			22492	1075	14843	14993	30477	30477					0.14131825207948623
VLTTPRRG	8	Unmodified	_VLTTPRRG_					0	0	0		SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant	SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant	SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2746276855469	2	450.274701	898.534849	0.64	0.00028818	-0.51997	-0.00023413	0.12003	5.4047E-05	450.27437897310676	87.927	1.0788	87.927	87.664	88.743	0					105	41	4	0	0	0	0.53423	2	21869	21869;21916		5.2307	0	1	3244100			22493	13397	14844	14994	30478;30479	30478					0.08152313228515595
VLTTPRRG	8	Unmodified	_VLTTPRRG_					0	0	0		SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant	SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant	SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.2746887207031	2	450.274701	898.534849	0.19311	8.6952E-05	-0.14343	-6.4581E-05	0.049684	2.2372E-05	450.2745739117329	87.899	1.0944	87.929	87.582	88.677	0.030037					115	41	5	0	0	0	0.53423	3	21667	21667;21712;21756		5.2307	0	1	2955000			22494	13397	14844	14994	30480;30481;30482	30480					0.08152313228515595
VLTYPVLTL	9	Unmodified	_VLTYPVLTL_					0	0	0			REV__ENST00000575500.5_2_17:78178032-78182141:+|nuORF	REV__ENST00000575500.5_2_17:78178032-78182141:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8309326171875	2	509.812793	1017.61103	0.43584	0.0002222	0.18187	9.2719E-05	0.61771	0.00031492	509.8126685418178	101.33	0.4698	101.38	101.07	101.54	0.042656					32	27	2	0	0	0	0.19398	1	25799	25799		19.257	2.3147	1	254130	+		22495	9406	14845	14995	30483	30483					0.10293272285287003
VLVFIKKVAK	10	Unmodified	_VLVFIKKVAK_					0	0	0		ENSG00000101017|ENST00000372285|CD40	ENSG00000101017|ENST00000372285|CD40	ENSG00000101017|ENST00000372285|CD40	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.892822265625	2	572.894452	1143.77435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.91	1	111.92	111.42	112.42	0.014595								0	0	0	0.33892	1	28527	28527		1.4819	0.95714	1				22496	1229	14846	14996	30484	30484					0.20821495126961054
VLVRLHPTL	9	Unmodified	_VLVRLHPTL_					0	0	0			REV__ENST00000311413.4_1_11:119207130-119207223:+|nuORF	REV__ENST00000311413.4_1_11:119207130-119207223:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.291259765625	2	524.337301	1046.66005	-0.055108	-2.8895E-05	-0.33373	-0.00017499	-0.38884	-0.00020388	524.3371240180937	46.005	0.45143	46.005	45.84	46.291	0					26	15	2	0	0	0	0.23598	1	9082	9082		15.847	0	1	90304	+		22497	11373	14847	14997	30485	30485					0.1385860536488508
VLWRVAILLVS	11	Unmodified	_VLWRVAILLVS_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3775634765625	2	634.908091	1267.80163	-0.16808	-0.00010672	0.6231	0.00039561	0.45502	0.00028889	634.9089257881332	108.65	0.11514	108.65	108.6	108.72	0					36	16	3	0	0	0	0.31076	1	28010	28010		1.3295	0	1	2600800	+		22498	10415	14848	14998	30486	30486					0.17843978667360716
VLYFFYTFP	9	Unmodified	_VLYFFYTFP_					0	0	0			REV__ENSG00000174946|ENST00000309180|GPR171	REV__ENSG00000174946|ENST00000309180|GPR171	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.8048706054688	2	598.804968	1195.59538	0.10445	6.2545E-05	0.10157	6.0822E-05	0.20602	0.00012337	598.8048914740456	104.72	0.61692	104.72	104.51	105.13	0					146	58	4	0	0	0	0.073832	4	26971	26939;26971;26974;27007		38.151	7.9264	1	477340	+		22499	10367	14849	14999	30487;30488;30489;30490	30488					0.00540985768225255
VLYFFYTFP	9	Unmodified	_VLYFFYTFP_					0	0	0			REV__ENSG00000174946|ENST00000309180|GPR171	REV__ENSG00000174946|ENST00000309180|GPR171	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8046264648438	2	598.804968	1195.59538	0.29698	0.00017783	-0.10802	-6.4684E-05	0.18896	0.00011315	598.8047282991917	104.66	0.59182	104.7	104.53	105.12	0.034004					151	63	4	0	0	0	0.073832	3	26759	26759;26795;26828		38.151	7.9264	1	474500	+		22500	10367	14849	14999	30491;30492;30493	30491					0.00540985768225255
VLYFFYTFP	9	Unmodified	_VLYFFYTFP_					0	0	0			REV__ENSG00000174946|ENST00000309180|GPR171	REV__ENSG00000174946|ENST00000309180|GPR171	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	598.804968	1195.59538	0.29698	0.00017783	-0.10802	-6.4684E-05	0.18896	0.00011315	598.8047282991917	104.66	0.59182	104.7	104.53	105.12	0.034004	-0.013598	-0.00013198	NaN	38.151	151	63	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474500	+		22501	10367	14849	14999							0.00540985768225255
VLYNGFTWS	9	Unmodified	_VLYNGFTWS_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.3233032226562	2	543.766374	1085.5182	0.48188	0.00026203	-0.080995	-4.4042E-05	0.40089	0.00021799	543.7663376528443	77.549	0.40495	77.583	77.417	77.822	0.034477					22	13	2	0	0	0	0.25051	1	18606	18606		7.9102	0.62092	1	190190			22502	7672	14850	15000	30494	30494					-0.021142324480933894
VLYRLLLL	8	Unmodified	_VLYRLLLL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.8389587402344	2	501.839146	1001.66374	0.26122	0.00013109	0.073788	3.703E-05	0.33501	0.00016812	501.8391058040293	87.64	1.2292	87.67	87.428	88.657	0.030037					61	46	3	0	0	0	0.53423	1	21717	21717		5.2307	0	1	272810			22503	4525	14851	15001	30495	30495					0.16297275138776968
VLYVFFFPV	9	Unmodified	_VLYVFFFPV_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8162841796875	2	565.817879	1129.6212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.184	1	99.227	98.727	99.727	0.042839								0	0	0	0.22377	1	25140	25140		14.582	3.7578	1		+		22504	10593	14852	15002	30496	30496					0.06157880010528061
VLYYEETKS	9	Unmodified	_VLYYEETKS_					0	0	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.280517578125	2	566.282054	1130.54956	-0.25589	-0.00014491	-0.95853	-0.0005428	-1.2144	-0.0006877	566.2809252357846	25.605	0.55123	25.605	25.401	25.952	0					64	41	3	0	0	0	0.34646	1	2988	2988		0.6015	0	1	24064			22505	4850	14853	15003	30497	30497					-0.010497042046836214
VMAHLLSLCQP	11	Unmodified	_VMAHLLSLCQP_					0	0	0			REV__nc|ENSG00000080823|Q9UQ07-4|MOK	REV__nc|ENSG00000080823|Q9UQ07-4|MOK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2991943359375	2	606.317394	1210.62024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.44	1	107.44	106.94	107.94	0								0	0	0	0.33792	1	27730	27730		1.4819	0.28856	1		+		22506	8232	14854	15004	30498	30498					0.02334974307655102
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(42)APRTLLL	0	0	1		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.3098754882812	2	515.309895	1028.60524	0.43289	0.00022307	-0.030194	-1.5559E-05	0.40269	0.00020751	515.3097753130361	55.868	1.4195	55.868	55.497	56.916	0					109	51	3	0	0	0	0.056368	1	12082	12082		41.956	12.874	1	793970			22507	5532	14855	15005	30499	30499		313			0.0920785050197992
VMDVMTAII	9	Unmodified	_VMDVMTAII_					0	0	0		ENST00000399788.6_1_12:463300-463399:-|nuORF	ENST00000399788.6_1_12:463300-463399:-|nuORF	ENST00000399788.6_1_12:463300-463399:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.76165771484375	2	496.761389	991.508225	0.42959	0.0002134	0.12041	5.9813E-05	0.55	0.00027322	496.7614619752522	38.52	1.1005	38.607	38.262	39.363	0.086884					103	41	4	0	0	0	0.32112	1	6803	6803		3.9444	0	1	365350			22508	6362	14856	15006	30500	30500					0.012131202306704836
VMEFLADLL	9	Unmodified	_VMEFLADLL_					0	0	0		ENST00000548527.5_2_12:104238192-104276310:-|nuORF;ENST00000551270.1_1_12:104237536-104277386:-|nuORF;nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P	ENST00000548527.5_2_12:104238192-104276310:-|nuORF	ENST00000548527.5_2_12:104238192-104276310:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7811889648438	2	525.780636	1049.54672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.52	1	89.552	89.052	90.052	0.032257								0	0	0	0.27613	1	22198	22198		3.9444	0	1				22509	7088	14857	15007	30501	30501					0.023927491368112896
VMELMPILF	9	Unmodified	_VMELMPILF_					0	0	0			REV__nc|ENSG00000135250|P78362|SRPK2	REV__nc|ENSG00000135250|P78362|SRPK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2649536132812	2	546.795232	1091.57591	-0.19922	-0.00010893	-0.020495	-1.1207E-05	-0.21972	-0.00012014	546.7952018198185	24.123	0.18847	24.123	24.016	24.205	0					26	17	2	0	0	0	0.26021	1	2605	2605		0	0	1	12269	+		22510	9198	14858	15008	30502	30502					0.033785701614533536
VMHVPMNF	8	Unmodified	_VMHVPMNF_					0	0	0			REV__ENSG00000073614|ENST00000399788|KDM5A	REV__ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.73260498046875	2	487.732966	973.451379	-0.34417	-0.00016787	-0.45669	-0.00022274	-0.80087	-0.00039061	487.7326689610565	40.662	0.90993	40.751	40.518	41.428	0.089645					76	33	3	0	0	0	0.53771	1	7451	7451		2.8892	0	1	305250	+		22511	8177	14859	15009	30503	30503					-0.03640882535194123
VMIVIYLK	8	Unmodified	_VMIVIYLK_					0	0	0			REV__ENSG00000130368|ENST00000674077|MAS1	REV__ENSG00000130368|ENST00000674077|MAS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.8057556152344	2	489.806457	977.598361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.736	1	96.776	96.276	97.276	0.039772								0	0	0	0.38822	1	24398	24398		0	0	1		+		22512	9055	14860	15010	30504	30504					0.10866537621370753
VMKVCLMR	8	Unmodified	_VMKVCLMR_					0	0	0			REV__ENSG00000165202|ENST00000297913|OR1Q1	REV__ENSG00000165202|ENST00000297913|OR1Q1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.26519775390625	2	490.266119	978.517684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.64	1	101.69	101.19	102.19	0.042656								0	0	0	0.38822	1	25891	25891		2.3027	0	1		+		22513	10028	14861	15011	30505	30505					0.02756610035180529
VMKYRQKN	8	Unmodified	_VMKYRQKN_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7653198242188	2	533.794943	1065.57533	0.43655	0.00023303	0.17229	9.1968E-05	0.60884	0.000325	533.7953258251725	100.82	0.20383	100.82	100.7	100.91	0					21	12	2	0	0	0	0.35759	1	25816	25816		9.3474	1.4373	1	53657	+		22514	7943	14862	15012	30506	30506					0.04516911556629566
VMLVLPQGA	9	Unmodified	_VMLVLPQGA_					0	0	0		nc|ENSG00000172059|O14901-2|KLF11;ENSG00000172059|ENST00000305883|KLF11	nc|ENSG00000172059|O14901-2|KLF11	nc|ENSG00000172059|O14901-2|KLF11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.2688293457031	2	464.270238	926.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.86	1	108.88	108.38	109.38	0.019402								0	0	0	0.28409	1	27844	27844		2.3027	0.24298	1				22515	4480	14863	15013	30507	30507					0.05972203547821664
VMNMLKSSF	9	Unmodified	_VMNMLKSSF_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.28173828125	2	528.764463	1055.51437	0.46833	0.00024764	-0.78716	-0.00041622	-0.31882	-0.00016858	528.7639983114855	53.779	0.74347	53.845	53.656	54.4	0.06543					42	29	2	0	0	0	0.24263	1	11425	11425		12.532	1.7076	1	173850			22516	4060	14864	15014	30508	30508					-0.01116361537810917
VMNMLKSSF	9	Unmodified	_VMNMLKSSF_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	528.764463	1055.51437	0.4695	0.00024826	-0.58508	-0.00030937	-0.11557	-6.1111E-05	528.764068069691	53.78	0.61499	53.78	53.603	54.218	0	-0.032599	0.00012993	NaN	12.532	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145710			22517	4060	14864	15014							-0.01116361537810917
VMPCGILDL	9	Unmodified	_VMPCGILDL_					0	0	0			REV__ENSG00000277791|ENST00000619426|PSMB3	REV__ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7474365234375	2	480.748282	959.48201	0.16606	7.9835E-05	-1.0797	-0.00051906	-0.91362	-0.00043922	480.7476431053628	63.915	0.40067	63.986	63.829	64.23	0.071018					21	13	2	0	0	0	0.21398	1	14401	14401		16.942	2.104	1	187600	+		22518	11142	14865	15015	30509	30509					0.000648510591872764
VMPKGFLVYG	10	Unmodified	_VMPKGFLVYG_					0	0	0			REV__nc|ENSG00000185946|Q96LT9-2|RNPC3	REV__nc|ENSG00000185946|Q96LT9-2|RNPC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8043212890625	2	555.804445	1109.59434	0.24601	0.00013673	-0.44449	-0.00024705	-0.19848	-0.00011032	555.8041616790724	23.983	0.27959	24.083	23.947	24.227	0.099737					39	26	2	0	0	0	0.46746	1	2446	2446		1.4819	0.28856	1	25091	+		22519	10691	14866	15016	30510	30510					0.043924481276917504
VMPSSFFLL	9	Oxidation (M)	_VM(Oxidation (M))PSSFFLL_		VM(1)PSSFFLL		VM(89)PSSFFLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7750244140625	2	528.775354	1055.53615	0.39403	0.00020836	-0.97183	-0.00051388	-0.5778	-0.00030552	528.7750736008518	91.142	2.1639	91.142	90.549	92.713	0					237	80	6	0	0	0	0.004541	4	22870	22870;22910;22953;22996		89.427	48.978	1	3510600			22520	3133	14867	15017	30511;30512;30513;30514	30511		201			0.010607664823965024
VMPSSFFLL	9	Oxidation (M)	_VM(Oxidation (M))PSSFFLL_		VM(1)PSSFFLL		VM(89)PSSFFLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7749633789062	2	528.775354	1055.53615	0.18987	0.0001004	-0.83066	-0.00043923	-0.64078	-0.00033883	528.775136056399	91.13	2.09	91.165	90.745	92.835	0.035446					233	75	5	0	0	0	0.004541	3	22698	22698;22747;22796		89.427	48.978	1	3562700			22521	3133	14867	15017	30515;30516;30517	30515		201			0.010607664823965024
VMPSSFFLL	9	Unmodified	_VMPSSFFLL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	520.7779541015625	2	520.777896	1039.54124	0.32107	0.00016721	0.069995	3.6452E-05	0.39106	0.00020366	520.7777723350205	96.1	0.51861	96.1	95.78	96.299	0					81	26	4	0	0	0	0.0046476	3	24338	24338;24343;24386		85.357	49.313	1	497060			22522	3133	14867	15018	30518;30519;30520	30518					0.023050703450280707
VMPSSFFLL	9	Unmodified	_VMPSSFFLL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.7780151367188	2	520.777896	1039.54124	0.27117	0.00014122	0.36886	0.00019209	0.64002	0.00033331	520.7779224794446	95.982	0.48099	96.022	95.839	96.32	0.039772					52	25	3	0	0	0	0.0046476	1	24161	24161		85.357	49.313	1	356350			22523	3133	14867	15018	30521	30521					0.023050703450280707
VMPVQTKD	8	Unmodified	_VMPVQTKD_					0	0	0			REV__APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant	REV__APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2420654296875	2	459.241678	916.468803	-0.15957	-7.3279E-05	0.22581	0.0001037	0.066247	3.0424E-05	459.2419500819213	32.905	0.74932	32.98	32.675	33.424	0.074322					45	32	2	0	0	0	0.54081	1	5044	5044		0.79363	0	1	20548	+		22524	7714	14868	15019	30522	30522					0.007227362714502306
VMPVQTKD	8	Unmodified	_VMPVQTKD_					0	0	0			REV__APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant	REV__APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.1719970703125	2	459.241678	916.468803	-0.15957	-7.3279E-05	0.22581	0.0001037	0.066247	3.0424E-05	459.2419500819213	32.905	0.74932	32.98	32.675	33.424	0.074322					45	32	2	0	0	0	0.3576	1	5099	5099		0.79363	0	1	20548	+		22525	7714	14868	15019	30523	30523					0.007227362714502306
VMPVQTKD	8	Unmodified	_VMPVQTKD_					0	0	0			REV__APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant	REV__APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.24200439453125	2	459.241678	916.468803	-0.19848	-9.1148E-05	0.52314	0.00024025	0.32466	0.0001491	459.2418972375254	31.1	0.41373	31.174	31.008	31.421	0.073782					30	20	2	0	0	0	0.3576	1	4497	4497		0.79363	0	1	39757	+		22526	7714	14868	15019	30524	30524					0.007227362714502306
VMPYVDILF	9	Unmodified	_VMPYVDILF_					0	0	0		ENSG00000156110|ENST00000539909|ADK;DNAJC19-ADK|2|fusion;DNAJC19-ADK|1|fusion;VCL-ADK|6|fusion;VCL-ADK|7|fusion;nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;VCL-ADK|9|fusion;VCL-ADK|11|fusion;VCL-ADK|3|fusion;VCL-ADK|13|fusion	ENSG00000156110|ENST00000539909|ADK	ENSG00000156110|ENST00000539909|ADK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7886352539062	2	548.791004	1095.56745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.776	1	97.776	97.276	98.276	0								0	0	0	0.23884	1	24869	24869		11.64	0.81637	1				22527	3611	14869	15020	30525	30525					0.02349339516490545
VMRAVWFF	8	Unmodified	_VMRAVWFF_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7566528320312	2	528.278398	1054.54224	-0.01544	-8.1568E-06	2.0103	0.001062	1.9949	0.0010538	528.2794214406133	33.946	0.43481	33.946	33.771	34.206	0					27	15	2	0	0	0	0.3576	1	5512	5512		2.8892	0	1	36676	+		22528	10944	14870	15021	30526	30526					0.01715329504577312
VMRAVWFF	8	Unmodified	_VMRAVWFF_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	528.278398	1054.54224	0.010663	5.633E-06	2.7116	0.0014325	2.7222	0.0014381	528.2799267024712	33.896	0.32798	33.972	33.846	34.174	0.07563	0.012852	0.00020539	NaN	2.8892	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31025	+		22529	10944	14870	15021							0.01715329504577312
VMRHRPFLLL	10	Unmodified	_VMRHRPFLLL_					0	0	0			REV__ENST00000381341.6_1_2:15746298-15747313:+|nuORF	REV__ENST00000381341.6_1_2:15746298-15747313:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3851318359375	2	641.38426	1280.75397	0.43078	0.00027629	0.67192	0.00043096	1.1027	0.00070725	641.3847123161737	97.03	0.73767	97.071	96.766	97.503	0.040855					79	36	3	0	0	0	0.4753	1	24572	24572		0	0	1	261220	+		22530	11672	14871	15022	30527	30527					0.12482001195553494
VMRRYRQS	8	Unmodified	_VMRRYRQS_					0	0	0			REV__nc|ENSG00000115474|O60928-2|KCNJ13	REV__nc|ENSG00000115474|O60928-2|KCNJ13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.8239135742188	2	548.295642	1094.57673	0.24567	0.0001347	1.4109	0.00077357	1.6565	0.00090827	548.2961031105319	49.744	0.6162	49.744	49.59	50.206	0					38	21	2	0	0	0	0.3576	1	10367	10367		2.3027	0	1	392640	+		22531	8787	14872	15023	30528	30528					0.03322545645391983
VMSQALKATF	10	Oxidation (M)	_VM(Oxidation (M))SQALKATF_		VM(1)SQALKATF		VM(170)SQALKATF	0	0	1		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2943725585938	2	556.294442	1110.57433	-0.091172	-5.0718E-05	-0.089657	-4.9875E-05	-0.18083	-0.00010059	556.2943680785401	42.888	1.0371	42.888	42.626	43.663	0					86	36	4	0	0	0	4.459E-11	3	8178	8136;8178;8224		168.9	128.66	1	616090			22532	3658	14873	15024	30529;30530;30531	30530		226			0.02346652397022808
VMSQALKATF	10	Oxidation (M)	_VM(Oxidation (M))SQALKATF_		VM(1)SQALKATF		VM(170)SQALKATF	0	0	1		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.294189453125	2	556.294442	1110.57433	-0.0010565	-5.8775E-07	-0.65804	-0.00036606	-0.6591	-0.00036665	556.294021655386	44.206	2.4059	44.206	43.663	46.069	0					199	84	4	0	0	0	4.459E-11	5	8561	8518;8561;8606;8649;8687		168.9	128.66	1	660410			22533	3658	14873	15024	30532;30533;30534;30535;30536	30533		226			0.02346652397022808
VMSQALKATF	10	Oxidation (M)	_VM(Oxidation (M))SQALKATF_		VM(1)SQALKATF		VM(140)SQALKATF	0	0	1		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2943725585938	2	556.294442	1110.57433	0.11307	6.29E-05	-0.10405	-5.7884E-05	0.009017	5.0161E-06	556.2943587052771	42.835	0.83157	42.925	42.65	43.482	0.089764					83	30	4	0	0	0	3.7686E-07	3	8017	7971;8017;8060		142.92	102.68	1	526210			22534	3658	14873	15024	30537;30538;30539	30538		226			0.02346652397022808
VMSQALKATF	10	Oxidation (M)	_VM(Oxidation (M))SQALKATF_		VM(1)SQALKATF		VM(160)SQALKATF	0	0	1		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2942504882812	2	556.294442	1110.57433	0.26123	0.00014532	-0.60021	-0.00033389	-0.33897	-0.00018857	556.2940241739454	44.078	2.0899	44.167	43.361	45.451	0.088924					178	76	4	0	0	0	2.0905E-08	4	8384	8384;8435;8462;8478		157.49	117.25	1	514680			22535	3658	14873	15024	30540;30541;30542;30543	30540		226			0.02346652397022808
VMTPYLQQ	8	Unmodified	_VMTPYLQQ_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2640380859375	2	490.249503	978.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.472	1	35.551	35.051	36.051	0.078827								0	0	0	0.38822	1	5808	5808		2.0598	0.21551	1				22536	5163	14874	15025	30544	30544					-0.0056497721150208235
VMVMYVDT	8	Unmodified	_VMVMYVDT_					0	0	0			REV__ERBB4|p.I947T|1|0.4|ENSG00000178568|chr2:211424181-211424181|A/G|missense_variant	REV__ERBB4|p.I947T|1|0.4|ENSG00000178568|chr2:211424181-211424181|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.22589111328125	2	479.224639	956.434726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.03	1	103.03	102.53	103.53	0								0	0	0	0.38822	1	26467	26467		0.79363	0	1		+		22537	12650	14875	15026	30545	30545					-0.04523428211825831
VMYWHVRF	8	Unmodified	_VMYWHVRF_					0	0	0		ENST00000555235.1_1_14:103966361-103969561:+|nuORF	ENST00000555235.1_1_14:103966361-103969561:+|nuORF	ENST00000555235.1_1_14:103966361-103969561:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2861328125	2	569.286754	1136.55896	0.1577	8.9775E-05	-1.6515	-0.00094016	-1.4938	-0.00085038	569.2857939272586	17.573	0.15069	17.657	17.578	17.729	0.083694					26	18	2	0	0	0	0.54081	1	877	877		0.79363	0	1	14270			22538	7122	14876	15027	30546	30546					-0.0038616960946455947
VNATEWPPF	9	Unmodified	_VNATEWPPF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.771240234375	2	530.758549	1059.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.927	1	37.927	37.427	38.427	0								0	0	0	0.2722	1	6668	6668		4.756	1.1595	1				22539	1075	14877	15028	30547	30547					-0.024825189651664914
VNEDPKDTL	9	Unmodified	_VNEDPKDTL_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7564086914062	2	515.756204	1029.49785	0.095775	4.9396E-05	-0.14151	-7.2985E-05	-0.045737	-2.3589E-05	515.7559694838187	45.504	0.70538	45.59	45.179	45.885	0.085617					46	27	2	0	0	0	0.31086	1	8907	8907		5.2969	0.066215	1	102470			22540	953	14878	15029	30548	30548					-0.01571447898572842
VNEVLLIL	8	Unmodified	_VNEVLLIL_					0	0	0			REV__PARP14|p.I172V|1|0.16|ENSG00000173193|chr3:122692459-122692459|A/G|missense_variant	REV__PARP14|p.I172V|1|0.16|ENSG00000173193|chr3:122692459-122692459|A/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.5527038574219	2	456.791861	911.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.731	1	34.808	34.308	35.308	0.076244								0	0	0	0.38822	1	5586	5586		0.6015	0	1		+		22541	12950	14879	15030	30549	30549					0.10984716596760791
VNEWAPVF	8	Unmodified	_VNEWAPVF_					0	0	0			REV__ENST00000297875.6_1_X:37985921-37986104:+|nuORF	REV__ENST00000297875.6_1_X:37985921-37986104:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2784423828125	2	481.242535	960.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.228	1	89.26	88.76	89.76	0.032257								0	0	0	0.38822	1	22109	22109		2.8892	0	1		+		22542	11333	14880	15031	30550	30550					-0.011298866482889025
VNFEFPEFQL	10	Unmodified	_VNFEFPEFQL_					0	0	0		ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.311279296875	2	635.311146	1268.60774	0.15952	0.00010134	0.081117	5.1535E-05	0.24063	0.00015288	635.3111102479716	95.217	0.51491	95.217	95.026	95.541	0					76	22	5	0	0	0	0.0012232	3	24115	24070;24115;24166		87.123	55.855	1	1811500			22543	4467	14881	15032	30551;30552;30553	30552					-0.015820225593643045
VNFEFPEFQL	10	Unmodified	_VNFEFPEFQL_					0	0	0		ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000426405.1_1_X:73629614-73629932:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	635.3112182617188	2	635.311146	1268.60774	0.16996	0.00010798	0.069539	4.4179E-05	0.2395	0.00015216	635.3110550176377	95.238	0.49719	95.277	95.043	95.54	0.038872					69	20	5	0	0	0	0.00053926	3	23953	23911;23953;23999		96.034	64.766	1	1822600			22544	4467	14881	15032	30554;30555;30556	30555					-0.015820225593643045
VNITRTASFA	10	Unmodified	_VNITRTASFA_					0	0	0			REV__ENSG00000173369|ENST00000509305|C1QB	REV__ENSG00000173369|ENST00000509305|C1QB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3345947265625	2	540.29583	1078.57711	0.18968	0.00010248	1.3293	0.00071823	1.519	0.00082071	540.2965756810693	89.606	0.25826	89.606	89.416	89.674	0					11	8	2	0	0	0	0.31643	1	22369	22369		9.3831	2.0939	1	66301	+		22545	10317	14882	15033	30557	30557					0.04096243846242942
VNKTCAYMM	9	Unmodified	_VNKTCAYMM_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7357177734375	2	530.734848	1059.45514	0.32748	0.0001738	0.77477	0.0004112	1.1022	0.000585	530.7352833603179	50.021	0.57269	50.094	49.842	50.414	0.07312					32	19	2	0	0	0	0.3354	1	10222	10222		2.0598	0	1	153350	+		22546	10301	14883	15034	30558	30558					-0.0722058082365038
VNKTCAYMM	9	Unmodified	_VNKTCAYMM_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	530.734848	1059.45514	0.32748	0.0001738	0.77477	0.0004112	1.1022	0.000585	530.7352833603179	50.021	0.57269	50.094	49.842	50.414	0.07312	-0.014466	-3.4644E-05	NaN	2.0598	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153350	+		22547	10301	14883	15034							-0.0722058082365038
VNLALPQR	8	Unmodified	_VNLALPQR_					0	0	0			REV__ENSG00000143621|ENST00000361891|ILF2	REV__ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.7770080566406	2	455.777077	909.5396	0.063845	2.9099E-05	0.062736	2.8594E-05	0.12658	5.7693E-05	455.77702772253355	39.327	0.39037	39.415	39.244	39.634	0.088566					29	16	3	0	0	0	0.53423	1	6968	6968		5.2307	0	1	84632	+		22548	9470	14884	15035	30559	30559					0.08121197371281141
VNLEINDLM	9	Unmodified	_VNLEINDLM_					0	0	0			REV__nc|ENSG00000166900|Q13277-3|STX3	REV__nc|ENSG00000166900|Q13277-3|STX3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.771240234375	2	530.7708	1059.52705	0.33232	0.00017639	-0.42011	-0.00022298	-0.087791	-4.6597E-05	530.7705727847671	37.903	0.42649	37.903	37.729	38.156	0					21	14	2	0	0	0	0.25787	1	6668	6668		2.9952	0	1	40431	+		22549	10099	14885	15036	30560	30560					-0.0003362687393746455
VNLFPFNVL	9	Unmodified	_VNLFPFNVL_					0	0	0		ENST00000471743.1_1_2:26435372-26437931:-|nuORF	ENST00000471743.1_1_2:26435372-26437931:-|nuORF	ENST00000471743.1_1_2:26435372-26437931:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.31884765625	2	531.80276	1061.59097	0.39892	0.00021215	-0.019676	-1.0464E-05	0.37925	0.00020168	531.8025209977276	71.442	0.74623	71.442	71.037	71.783	0					38	25	3	0	0	0	0.22344	1	16870	16870		15.847	5.0233	1	315370			22550	6677	14886	15037	30561	30561					0.06263521345317713
VNLFPFNVL	9	Unmodified	_VNLFPFNVL_					0	0	0		ENST00000471743.1_1_2:26435372-26437931:-|nuORF	ENST00000471743.1_1_2:26435372-26437931:-|nuORF	ENST00000471743.1_1_2:26435372-26437931:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.31884765625	2	531.80276	1061.59097	0.49684	0.00026422	-0.036784	-1.9562E-05	0.46006	0.00024466	531.8022286011505	71.351	0.59643	71.41	71.084	71.68	0.058578					37	21	3	0	0	0	0.23216	1	16650	16650		14.838	0	1	302760			22551	6677	14886	15037	30562	30562					0.06263521345317713
VNLGNLPRS	9	Unmodified	_VNLGNLPRS_					0	0	0			REV__ENSG00000148848|ENST00000448723|ADAM12	REV__ENSG00000148848|ENST00000448723|ADAM12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.83984375	2	485.277441	968.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.19	1	114.2	113.7	114.7	0.013336								0	0	0	0.28724	1	29077	29077		1.6526	0.17072	1		+		22552	9601	14887	15038	30563	30563					0.05479992020332247
VNLLCATVF	9	Unmodified	_VNLLCATVF_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2687072753906	2	490.267696	978.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.859	1	78.859	78.359	79.359	0								0	0	0	0.26267	1	19115	19115		6.7232	0.96273	1		+		22553	12693	14888	15039	30564	30564					0.030718996851987868
VNLLCATVF	9	Unmodified	_VNLLCATVF_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2686767578125	2	490.267696	978.520839	0.31566	0.00015476	1.784	0.00087462	2.0996	0.0010294	490.2684756425856	78.733	0.96357	78.763	78.112	79.075	0.030159					49	33	2	0	0	0	0.26684	2	18945	18810;18945		10.824	1.4925	1	429350	+		22554	12693	14888	15039	30565;30566	30566					0.030718996851987868
VNLLCATVF	9	Unmodified	_VNLLCATVF_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.26837158203125	2	490.267696	978.520839	0.25939	0.00012717	1.3396	0.00065676	1.599	0.00078393	490.26847266756744	79.403	1.1793	79.429	79.071	80.251	0.026436					67	41	2	0	0	0	0.30005	1	19133	19133		6.7232	1.4925	1	215170	+		22555	12693	14888	15039	30567	30567					0.030718996851987868
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.3563232421875	2	611.356754	1220.69895	0.062072	3.7948E-05	-0.67924	-0.00041526	-0.61717	-0.00037731	611.3562075436072	86.968	0.8156	86.968	86.66	87.476	0					103	34	4	0	0	0	0.45034	1	21692	21692		4.897	4.897	1	1245100			22556	5643	14889	15040	30568	30568					0.09743285928584555
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.35595703125	2	611.356754	1220.69895	0.14308	8.7473E-05	-0.74227	-0.00045379	-0.59918	-0.00036632	611.3561481973122	86.919	0.80278	86.946	86.653	87.456	0.027573					109	35	4	0	0	0	0.45034	1	21399	21399		2.4985	0	1	1382900			22557	5643	14889	15040	30569	30569					0.09743285928584555
VNLSKKSLSN	10	Unmodified	_VNLSKKSLSN_					0	0	0			REV__ENSG00000178074|ENST00000319974|C2orf69	REV__ENSG00000178074|ENST00000319974|C2orf69	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.316650390625	2	545.316763	1088.61897	0.2556	0.00013938	0.33027	0.0001801	0.58587	0.00031949	545.3167985551793	87.562	1.0736	87.592	87.311	88.385	0.030037					86	39	4	0	0	0	0.46083	1	21699	21699		2.7352	0.23671	1	672500	+		22558	10440	14890	15041	30570	30570					0.07820799534783873
VNNWRWRG	8	Unmodified	_VNNWRWRG_					0	0	0		ENST00000463681.1_1_2:61404673-61406216:+|nuORF;ENST00000357022.6_2_2:61404673-61404988:+|nuORF	ENST00000463681.1_1_2:61404673-61406216:+|nuORF	ENST00000463681.1_1_2:61404673-61406216:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7195434570312	2	544.280849	1086.54715	-0.24661	-0.00013423	-1.375	-0.00074839	-1.6216	-0.00088261	544.2800801711414	22.342	0.33391	22.342	22.209	22.543	0					39	23	2	0	0	0	0.3576	1	2146	2146		0.69038	0	1	19281			22559	6125	14891	15042	30571	30571					0.0073334969154075225
VNPMNIYE	8	Unmodified	_VNPMNIYE_					0	0	0		nc|ENSG00000163357|Q5T197-2|DCST1;ENSG00000163357|ENST00000295542|DCST1	nc|ENSG00000163357|Q5T197-2|DCST1	nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.748046875	2	490.23131	978.448068	-0.11464	-5.6198E-05	-0.1818	-8.9125E-05	-0.29644	-0.00014532	490.2311635995076	32.71	0.46777	32.784	32.621	33.088	0.07378					28	21	2	0	0	0	0.3576	1	4986	4986		2.5775	0	1	26170			22560	3891	14892	15043	30572	30572					-0.04201854108225689
VNPPSFPR	8	Unmodified	_VNPPSFPR_					0	0	0			REV__ENST00000263377.6_1_19:15348671-15349019:-|nuORF	REV__ENST00000263377.6_1_19:15348671-15349019:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.24810791015625	2	457.248152	912.481751	0.0044393	2.0298E-06	-0.08183	-3.7416E-05	-0.07739	-3.5387E-05	457.2480402175006	32.147	1.4213	32.147	31.957	33.378	0					125	60	3	0	0	0	0.46914	1	4961	4961		16.942	16.942	1	361570	+		22561	11242	14893	15044	30573	30573					0.02200935445853247
VNQEEKSFA	9	Unmodified	_VNQEEKSFA_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.8082885742188	2	526.256371	1050.49819	-0.17277	-9.0919E-05	-0.0062556	-3.292E-06	-0.17902	-9.4212E-05	526.2563049238254	31.209	0.32699	31.283	31.129	31.456	0.07378					24	16	2	0	0	0	0.25699	1	4521	4521		3.5965	0.70727	1	28603			22562	4593	14894	15045	30574	30574					-0.025040281787141794
VNQMLERTS	9	Unmodified	_VNQMLERTS_					0	0	0		ENSG00000132746|ENST00000673966|ALDH3B2	ENSG00000132746|ENST00000673966|ALDH3B2	ENSG00000132746|ENST00000673966|ALDH3B2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.287841796875	2	539.271498	1076.52844	0.17409	9.388E-05	0.3162	0.00017052	0.49029	0.0002644	539.2715857343097	44.279	1.1468	44.368	43.818	44.965	0.088924					57	40	2	0	0	0	0.3182	1	8621	8621		4.3292	4.3292	1	71185			22563	2593	14895	15046	30575	30575					-0.006759927851589964
VNQYEVFL	8	Unmodified	_VNQYEVFL_					0	0	0		ENST00000510531.5_1_5:6644946-6645183:+|nuORF	ENST00000510531.5_1_5:6644946-6645183:+|nuORF	ENST00000510531.5_1_5:6644946-6645183:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2604675292969	2	506.260925	1010.5073	0.28245	0.00014299	0.042726	2.163E-05	0.32518	0.00016462	506.2608200905305	62.208	1.0602	62.208	61.938	62.999	0					98	39	4	0	0	0	0.48462	2	14199	14199;14249		14.838	2.0586	1	1112400			22564	6914	14896	15047	30576;30577	30576					0.0024636517761109644
VNQYEVFL	8	Unmodified	_VNQYEVFL_					0	0	0		ENST00000510531.5_1_5:6644946-6645183:+|nuORF	ENST00000510531.5_1_5:6644946-6645183:+|nuORF	ENST00000510531.5_1_5:6644946-6645183:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2609558105469	2	506.260925	1010.5073	0.2777	0.00014059	-0.0068557	-3.4708E-06	0.27084	0.00013712	506.26081473766175	62.096	0.93505	62.169	61.972	62.907	0.073421					77	33	3	0	0	0	0.51415	1	13959	13959		10.824	1.4408	1	1024200			22565	6914	14896	15047	30578	30578					0.0024636517761109644
VNRLIFTTI	9	Unmodified	_VNRLIFTTI_					0	0	0			REV__nc|ENSG00000106113|Q13324-6|CRHR2	REV__nc|ENSG00000106113|Q13324-6|CRHR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2869262695312	2	538.826766	1075.63898	-0.12007	-6.4696E-05	-0.67135	-0.00036174	-0.79141	-0.00042644	538.8263355846624	44.5	0.61274	44.5	44.329	44.942	0					38	21	3	0	0	0	0.25845	1	8767	8767		2.0598	0	1	114940	+		22566	8570	14897	15048	30579	30579					0.1041859526535518
VNRRNWGE	8	Unmodified	_VNRRNWGE_					0	0	0			REV__ENSG00000174173|ENST00000309922|TRMT10C	REV__ENSG00000174173|ENST00000309922|TRMT10C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7984008789062	2	515.762489	1029.51043	-0.054023	-2.7863E-05	0.246	0.00012688	0.19198	9.9016E-05	515.7623899865335	31.447	0.3392	31.447	31.258	31.597	0					24	15	2	0	0	0	0.3576	1	4725	4725		2.5775	0	1	13364	+		22567	10338	14898	15049	30580	30580					-0.003149469250047332
VNSGTISSHS	10	Unmodified	_VNSGTISSHS_					0	0	0			REV__ENST00000414083.6_2_6:33289124-33290733:-|nuORF	REV__ENST00000414083.6_2_6:33289124-33290733:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.736083984375	2	494.738345	987.462138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.484	1	26.575	26.075	27.075	0.091507								0	0	0	0.33711	1	3144	3144		3.5965	0.60125	1		+		22568	11264	14899	15050	30581	30581					-0.032094853555577174
VNSNLLEALF	10	Unmodified	_VNSNLLEALF_					0	0	0			REV__ENST00000536221.1_8:145474248-145485625:+|nuORF	REV__ENST00000536221.1_8:145474248-145485625:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.3062744140625	2	560.305864	1118.59717	0.47935	0.00026858	0.36435	0.00020415	0.8437	0.00047273	560.3059025475004	59.901	0.42477	59.901	59.758	60.183	0					29	14	3	0	0	0	0.32016	1	13343	13343		20.415	3.3016	1	176410	+		22569	10487	14900	15051	30582	30582					0.04261994786179457
VNSQFLVSNS	10	Unmodified	_VNSQFLVSNS_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	ENSG00000066629|ENST00000262233|EML1	ENSG00000066629|ENST00000262233|EML1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2647094726562	2	547.77747	1093.54039	-0.068236	-3.7378E-05	0.47593	0.00026071	0.4077	0.00022333	547.7776672209026	31.807	0.66593	31.807	31.517	32.183	0					71	27	4	0	0	0	0.44938	1	4865	4865		4.897	0.141	1	171460			22570	701	14901	15052	30583	30583					-0.0026405277030789875
VNTSKGFLI	9	Unmodified	_VNTSKGFLI_					0	0	0		ENSG00000106992|ENST00000644144|AK1	ENSG00000106992|ENST00000644144|AK1	ENSG00000106992|ENST00000644144|AK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.78485107421875	2	489.784567	977.554582	0.32955	0.00016141	-0.020651	-1.0114E-05	0.3089	0.0001513	489.78450585159214	62.478	0.79429	62.478	62.175	62.969	0					48	28	2	0	0	0	0.23216	1	14092	14092		14.838	4.7643	1	168920			22571	1539	14902	15053	30584	30584					0.06490644448626881
VNVLRPVN	8	Unmodified	_VNVLRPVN_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.7769775390625	2	455.777077	909.5396	0.16185	7.3769E-05	-0.096683	-4.4066E-05	0.065169	2.9703E-05	455.77700186792254	39.46	0.51852	39.46	39.258	39.777	0					32	18	3	0	0	0	0.53423	1	7140	7140		5.2307	0	1	80370	+		22572	9113	14903	15054	30585	30585					0.08121197371269773
VNVLRPVN	8	Unmodified	_VNVLRPVN_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	455.777077	909.5396	0.16185	7.3769E-05	-0.096683	-4.4066E-05	0.065169	2.9703E-05	455.77700186792254	39.46	0.51852	39.46	39.258	39.777	0	0.022424	-2.0228E-05	NaN	5.2307	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80370	+		22573	9113	14903	15054							0.08121197371269773
VNVLRPVN	8	Unmodified	_VNVLRPVN_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	455.777077	909.5396	0.063845	2.9099E-05	0.062736	2.8594E-05	0.12658	5.7693E-05	455.77702772253355	39.327	0.39037	39.415	39.244	39.634	0.088566	-0.022424	0.00012509	NaN	5.2307	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84632	+		22574	9113	14903	15054							0.08121197371269773
VNVNPTNIR	9	Unmodified	_VNVNPTNIR_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.7151489257812	2	513.788173	1025.56179	-0.08284	-4.2562E-05	-0.017923	-9.2088E-06	-0.10076	-5.1771E-05	513.7881419629808	30.934	0.40214	30.934	30.779	31.181	0					33	19	3	0	0	0	0.25458	1	4599	4599		5.7319	0	1	58290			22575	3555	14904	15055	30586	30586					0.05003377049024493
VNVNPTNIR	9	Unmodified	_VNVNPTNIR_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7151489257812	2	513.788173	1025.56179	-0.052808	-2.7132E-05	-0.079126	-4.0654E-05	-0.13193	-6.7786E-05	513.7881503396537	30.917	0.36772	30.991	30.828	31.196	0.073782					31	17	2	0	0	0	0.24929	1	4468	4468		9.3831	0	1	39070			22576	3555	14904	15055	30587	30587					0.05003377049024493
VPAAILGLVL	10	Unmodified	_VPAAILGLVL_					0	0	0		tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.3233947753906	2	483.323328	964.632104	0.23232	0.00011229	-0.05561	-2.6878E-05	0.17671	8.541E-05	483.32321421555866	93.756	0.19688	93.756	93.573	93.77	0					14	6	3	0	0	0	0.43343	1	23627	23627		7.9102	0	1	540790			22577	13472	14905	15056	30588	30588					0.1483728238479216
VPAAILGLVL	10	Unmodified	_VPAAILGLVL_					0	0	0		tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.32330322265625	2	483.323328	964.632104	0.30237	0.00014614	-0.023596	-1.1405E-05	0.27877	0.00013474	483.3232725417727	92.724	1.2035	92.761	92.402	93.605	0.03653					124	48	4	0	0	0	0.43343	1	23281	23281		7.9102	0	1	4957400			22578	13472	14905	15056	30589	30589					0.1483728238479216
VPAAILGLVL	10	Unmodified	_VPAAILGLVL_					0	0	0		tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.3232727050781	2	483.323328	964.632104	0.2037	9.8452E-05	-0.04489	-2.1697E-05	0.15881	7.6755E-05	483.32327571846673	93.455	0.57937	93.493	93.271	93.85	0.037369					41	22	2	0	0	0	0.43343	2	23331	23331;23482		7.9102	0	1	217090			22579	13472	14905	15056	30590;30591	30590					0.1483728238479216
VPALSEGQR	9	Unmodified	_VPALSEGQR_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.76141357421875	2	478.761623	955.508694	-0.38997	-0.0001867	0.33971	0.00016264	-0.05026	-2.4063E-05	478.76166483000185	30.039	1.0698	30.039	29.799	30.869	0					117	53	4	0	0	0	0.27929	1	4265	4265		9.3831	0	1	334360			22580	2264	14906	15057	30592	30592					0.029159992663721823
VPALSEGQR	9	Unmodified	_VPALSEGQR_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7616882324219	2	478.761623	955.508694	-0.36584	-0.00017515	0.41316	0.00019781	0.047326	2.2658E-05	478.761690962823	29.975	1.0004	30.051	29.815	30.815	0.075403					124	62	3	0	0	0	0.27929	2	4125	4125;4238		9.3831	0	1	247450			22581	2264	14906	15057	30593;30594	30593					0.029159992663721823
VPAPPPPPAP	10	Unmodified	_VPAPPPPPAP_					0	0	0			REV__nc|ENSG00000141858|Q6SPF0|SAMD1	REV__nc|ENSG00000141858|Q6SPF0|SAMD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.77020263671875	2	470.268553	938.522553	0.25108	0.00011807	-0.26299	-0.00012368	-0.011917	-5.6041E-06	470.26818826034173	71.31	0.34424	71.31	71.158	71.502	0					23	11	3	0	0	0	0.3939	1	16815	16815		12.532	4.6214	1	143060	+		22582	12803	14907	15058	30595	30595					0.05083276765458322
VPARMQLM	8	Unmodified	_VPARMQLM_					0	0	0			REV__ENSG00000243978|ENST00000520821|RTL9	REV__ENSG00000243978|ENST00000520821|RTL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2537841796875	2	473.254065	944.493578	-0.38392	-0.00018169	-0.94094	-0.0004453	-1.3249	-0.00062699	473.25355892548606	29.37	0.52335	29.37	29.155	29.678	0					69	29	3	0	0	0	0.52502	1	4075	4075		9.3474	0.75416	1	76512	+		22583	11068	14908	15059	30596	30596					0.019110928731720378
VPARMQLM	8	Unmodified	_VPARMQLM_					0	0	0			REV__ENSG00000243978|ENST00000520821|RTL9	REV__ENSG00000243978|ENST00000520821|RTL9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	473.254065	944.493578	-0.38392	-0.00018169	-0.94094	-0.0004453	-1.3249	-0.00062699	473.25355892548606	29.37	0.52335	29.37	29.155	29.678	0	0.011365	-7.9416E-05	NaN	9.3474	69	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76512	+		22584	11068	14908	15059							0.019110928731720378
VPARMQLM	8	Unmodified	_VPARMQLM_					0	0	0			REV__ENSG00000243978|ENST00000520821|RTL9	REV__ENSG00000243978|ENST00000520821|RTL9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	473.254065	944.493578	-0.39129	-0.00018518	-0.7297	-0.00034534	-1.121	-0.00053051	473.2536100748283	29.269	0.48785	29.348	29.138	29.626	0.078287	-0.011365	0.00012052	NaN	9.3474	69	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57249	+		22585	11068	14908	15059							0.019110928731720378
VPASSSLPLL	10	Unmodified	_VPASSSLPLL_					0	0	0			REV__USP29|p.P548L|1|0.27|ENSG00000131864|chr19:57130318-57130318|C/T|missense_variant	REV__USP29|p.P548L|1|0.27|ENSG00000131864|chr19:57130318-57130318|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2922058105469	2	492.292225	982.569897	0.45427	0.00022363	-0.1119	-5.5086E-05	0.34237	0.00016855	492.29213422023497	81.629	0.51682	81.651	81.421	81.938	0.021866					30	18	2	0	0	0	0.41688	1	19806	19806		10.074	0	1	76083	+		22586	13328	14909	15060	30597	30597					0.07791511245807214
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.761474609375	2	478.761623	955.508694	-0.38997	-0.0001867	0.33971	0.00016264	-0.05026	-2.4063E-05	478.76166483000185	30.039	1.0698	30.039	29.799	30.869	0					117	53	4	0	0	0	0.098463	3	4302	4302;4344;4387		32.786	3.7041	1	334360			22587	1411	14910	15061	30598;30599;30600	30598					0.029159992663721823
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.761474609375	2	478.761623	955.508694	-0.36584	-0.00017515	0.41316	0.00019781	0.047326	2.2658E-05	478.761690962823	29.975	1.0004	30.051	29.815	30.815	0.075403					124	62	3	0	0	0	0.088609	2	4165	4165;4202		34.932	10.049	1	247450			22588	1411	14910	15061	30601;30602	30601					0.029159992663721823
VPAWDHTL	8	Unmodified	_VPAWDHTL_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7402038574219	2	469.74016	937.465767	0.048464	2.2765E-05	0.035946	1.6885E-05	0.08441	3.9651E-05	469.7400480318282	50.396	0.65003	50.396	50.206	50.856	0					43	22	3	0	0	0	0.10563	2	10429	10429;10484		53.576	27.234	1	199120			22589	2329	14911	15062	30603;30604	30603					-0.005467707910497666
VPAWDHTL	8	Unmodified	_VPAWDHTL_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.7401428222656	2	469.74016	937.465767	0.039863	1.8725E-05	-0.0063319	-2.9744E-06	0.033531	1.5751E-05	469.74003679455143	50.358	0.50436	50.431	50.237	50.741	0.07312					36	17	3	0	0	0	0.020479	2	10275	10275;10327		77.984	51.643	1	198210			22590	2329	14911	15062	30605;30606	30605					-0.005467707910497666
VPCKVEPGL	9	Unmodified	_VPCKVEPGL_					0	0	0		FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.25958251953125	2	471.259871	940.505189	-0.51234	-0.00024144	0.16146	7.6089E-05	-0.35088	-0.00016536	471.25986640048137	42.592	2.3341	42.592	42.248	44.582	0					205	81	5	0	0	0	0.0045417	3	8068	8068;8116;8286		89.401	41.055	1	1458700			22591	5255	14912	15063	30607;30608;30609	30607					0.03255613168153104
VPCKVEPGL	9	Unmodified	_VPCKVEPGL_					0	0	0		FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2596435546875	2	471.259871	940.505189	-0.45183	-0.00021293	0.21112	9.9493E-05	-0.24071	-0.00011344	471.2599053398591	42.476	2.2428	42.566	42.27	44.512	0.089767					228	81	6	0	0	0	0.0045417	4	7919	7871;7919;7959;8126		89.401	41.055	1	1240000			22592	5255	14912	15063	30610;30611;30612;30613	30611					0.03255613168153104
VPCMCCYV	8	Unmodified	_VPCMCCYV_					0	0	0		ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.1722412109375	2	459.173038	916.331523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.354	1	38.441	37.941	38.941	0.08688								0	0	0	0.38822	1	6671	6671		0.79363	0.79363	1				22593	4129	14913	15064	30614	30614					-0.1299895519563279
VPDEELDAL	9	Unmodified	_VPDEELDAL_					0	0	0		ENST00000487968.5_1_22:23626151-23631864:+|nuORF;nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	ENST00000487968.5_1_22:23626151-23631864:+|nuORF	ENST00000487968.5_1_22:23626151-23631864:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7449645996094	2	500.745305	999.476056	0.40726	0.00020393	0.13713	6.8667E-05	0.54439	0.0002726	500.74536608040245	62.48	0.59793	62.48	62.285	62.883	0					37	21	2	0	0	0	0.12809	1	14123	14123		26.884	11.036	1	109330			22594	5090	14914	15065	30615	30615					-0.02370252647142479
VPDEELDAL	9	Unmodified	_VPDEELDAL_					0	0	0		ENST00000487968.5_1_22:23626151-23631864:+|nuORF;nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	ENST00000487968.5_1_22:23626151-23631864:+|nuORF	ENST00000487968.5_1_22:23626151-23631864:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.74481201171875	2	500.745305	999.476056	0.3681	0.00018432	0.0037424	1.874E-06	0.37184	0.0001862	500.7452579680464	62.523	0.59751	62.595	62.309	62.906	0.072701					26	20	2	0	0	0	0.18364	2	13961	13961;13972		20.454	8.8133	1	97817			22595	5090	14914	15065	30616;30617	30616					-0.02370252647142479
VPDEHFSTL	9	Unmodified	_VPDEHFSTL_					0	0	0		ENSG00000146540|ENST00000397098|C7orf50	ENSG00000146540|ENST00000397098|C7orf50	ENSG00000146540|ENST00000397098|C7orf50	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.26171875	2	522.753464	1043.49238	0.40327	0.00021081	-1.0254	-0.00053604	-0.62214	-0.00032523	522.7531447304376	47.373	0.91692	47.373	46.878	47.795	0					67	30	3	0	0	0	0.2229	1	9483	9483		19.257	7.6167	1	181860			22596	3293	14915	15066	30618	30618					-0.027631266903881624
VPDEHFSTL	9	Unmodified	_VPDEHFSTL_					0	0	0		ENSG00000146540|ENST00000397098|C7orf50	ENSG00000146540|ENST00000397098|C7orf50	ENSG00000146540|ENST00000397098|C7orf50	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.261474609375	2	522.753464	1043.49238	0.32528	0.00017004	-0.4115	-0.00021511	-0.086219	-4.5071E-05	522.7532687802388	47.173	0.79212	47.256	46.937	47.729	0.083096					68	31	3	0	0	0	0.2229	1	9369	9369		19.257	9.8739	1	147410			22597	3293	14915	15066	30619	30619					-0.027631266903881624
VPDFSFPYL	9	Unmodified	_VPDFSFPYL_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7701416015625	2	542.771126	1083.5277	0.61376	0.00033313	-0.93482	-0.00050739	-0.32106	-0.00017426	542.7697881166425	93.111	1.0024	93.111	92.767	93.77	0					97	38	4	0	0	0	0.18364	2	23409	23409;23451		20.454	3.3407	1	498230	+		22598	8034	14916	15067	30620;30621	30620					-0.010724641625756703
VPDFSFPYL	9	Unmodified	_VPDFSFPYL_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2635498046875	2	542.771126	1083.5277	0.61376	0.00033313	-0.93482	-0.00050739	-0.32106	-0.00017426	542.7697881166425	93.111	1.0024	93.111	92.767	93.77	0					97	38	4	0	0	0	0.25281	1	23364	23364		6.7232	1.9672	1	498230	+		22599	8034	14916	15067	30622	30622					-0.010724641625756703
VPDFSFPYL	9	Unmodified	_VPDFSFPYL_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7701416015625	2	542.771126	1083.5277	0.60102	0.00032622	-1.2586	-0.00068313	-0.65758	-0.00035691	542.7698233290891	93.042	0.92601	93.079	92.748	93.674	0.037369					77	38	3	0	0	0	0.23216	1	23230	23230		14.838	2.5976	1	386100	+		22600	8034	14916	15067	30623	30623					-0.010724641625756703
VPDGASDAEL	10	Unmodified	_VPDGASDAEL_					0	0	0		ENST00000331268.9_1_15:79165226-79165316:+|nuORF	ENST00000331268.9_1_15:79165226-79165316:+|nuORF	ENST00000331268.9_1_15:79165226-79165316:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.22723388671875	2	487.227279	972.440005	0.011831	5.7644E-06	-0.094039	-4.5818E-05	-0.082207	-4.0054E-05	487.2272008088709	48.665	0.60813	48.665	48.424	49.032	0					43	20	3	0	0	0	0.33099	1	9947	9947		19.257	2.3147	1	311480			22601	6057	14917	15068	30624	30624					-0.047317098239886946
VPDGASDAEL	10	Unmodified	_VPDGASDAEL_					0	0	0		ENST00000331268.9_1_15:79165226-79165316:+|nuORF	ENST00000331268.9_1_15:79165226-79165316:+|nuORF	ENST00000331268.9_1_15:79165226-79165316:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.22705078125	2	487.227279	972.440005	0.041851	2.0391E-05	0.025962	1.2649E-05	0.067813	3.304E-05	487.22725501263466	48.583	0.59597	48.663	48.414	49.01	0.080032					39	19	3	0	0	0	0.33099	1	9792	9792		19.257	1.1106	1	213870			22602	6057	14917	15068	30625	30625					-0.047317098239886946
VPDGLDFIL	9	Unmodified	_VPDGLDFIL_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.2730407714844	2	494.771126	987.527698	0.45164	0.00022346	-0.16433	-8.1304E-05	0.28731	0.00014215	494.7709879560139	82.051	0.55204	82.073	81.846	82.398	0.021866					41	19	3	0	0	0	0.25979	1	19955	19955		11.64	0	1	208110	+		22603	9830	14918	15069	30626	30626					0.033435358374163116
VPDHQDIAF	9	Unmodified	_VPDHQDIAF_					0	0	0		ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2537231445312	2	521.253631	1040.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.684	1	46.684	46.184	47.184	0								0	0	0	0.21929	1	9312	9312		15.248	0.66679	1				22604	3176	14919	15070	30627	30627					-0.025917069705201357
VPDHVVWSL	9	Unmodified	_VPDHVVWSL_					0	0	0		ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2818603515625	2	526.282192	1050.54983	0.31343	0.00016495	-0.74817	-0.00039375	-0.43474	-0.00022879	526.2817619695279	63.161	1.8065	63.233	62.805	64.611	0.072701					187	68	4	0	0	0	0.0010022	9	14171	14097;14171;14211;14262;14303;14349;14397;14450;14561		123.45	58.216	1	6142600			22605	3087	14920	15071	30628;30629;30630;30631;30632;30633;30634;30635;30636	30629					0.026577603058512977
VPDKDSNY	8	Unmodified	_VPDKDSNY_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	469.253173828125	2	469.216714	936.418876	0.010148	4.7617E-06	1.0947	0.00051367	1.1049	0.00051843	469.21735281494307	36.904	0.33117	36.986	36.739	37.07	0.081715					17	13	2	0	0	0	0.3576	1	6170	6170		2.3027	1.5091	1	17393	+		22606	8063	14921	15072	30637	30637					-0.05187675132856384
VPDNRRLF	8	Unmodified	_VPDNRRLF_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.312744140625	2	508.785433	1015.55631	0.13743	6.9924E-05	-1.9773	-0.001006	-1.8399	-0.00093612	509.2847655490105	89.646	0.12115	89.68	89.604	89.726	0.034065					6	4	2	0	0	0	0.35759	1	22216	22216		11.114	0.93107	1	71489			22607	487	14922	15073	30638	30638					0.04915698257218537
VPDPFFVEL	9	Unmodified	_VPDPFFVEL_					0	0	0		ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	ENSG00000115970|ENST00000405975|THADA	ENSG00000115970|ENST00000405975|THADA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7789916992188	2	531.778951	1061.54335	0.62488	0.0003323	1.9719	0.0010486	2.5967	0.0013809	531.778676153772	93.084	1.2824	93.084	92.487	93.77	0					200	49	6	0	0	0	0.0097093	5	23422	23378;23422;23469;23513;23556		68.081	30.107	1	3282600			22608	1932	14923	15074	30639;30640;30641;30642;30643	30640					0.015038223544706852
VPDPFFVEL	9	Unmodified	_VPDPFFVEL_					0	0	0		ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	ENSG00000115970|ENST00000405975|THADA	ENSG00000115970|ENST00000405975|THADA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7791137695312	2	531.778951	1061.54335	0.65122	0.0003463	1.202	0.00063918	1.8532	0.00098548	531.7786720173629	93.037	1.0442	93.074	92.722	93.766	0.037369					154	42	5	0	0	0	0.01943	5	23219	23219;23264;23309;23354;23399		58.679	20.705	1	2863800			22609	1932	14923	15074	30644;30645;30646;30647;30648	30644					0.015038223544706852
VPDPKELLL	9	Unmodified	_VPDPKELLL_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.3079833984375	2	512.307875	1022.6012	0.66541	0.0003409	-0.28754	-0.00014731	0.37787	0.00019359	512.3076340521218	65.426	1.0001	65.426	65.137	66.137	0					88	35	4	0	0	0	0.0093024	2	14998	14998;15043		69.338	25.48	1	1282300			22610	2898	14924	15075	30649;30650	30649					0.09080084279912626
VPDPKELLL	9	Unmodified	_VPDPKELLL_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.30810546875	2	512.307875	1022.6012	0.4878	0.0002499	-0.092319	-4.7296E-05	0.39548	0.00020261	512.3077352222265	65.293	1.0029	65.361	65.188	66.191	0.068916					87	38	3	0	0	0	0.02143	4	14885	14839;14885;14928;14981		57.249	19.275	1	995600			22611	2898	14924	15075	30651;30652;30653;30654	30652					0.09080084279912626
VPDPNVIKL	9	Unmodified	_VPDPNVIKL_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.8002624511719	2	497.800217	993.585882	0.37808	0.00018821	-0.041553	-2.0685E-05	0.33653	0.00016752	497.8000837821848	56.203	0.93906	56.203	55.866	56.805	0					79	34	3	0	0	0	0.0077293	3	12189	12146;12189;12242		74.2	38.073	1	1524100			22612	3655	14925	15076	30655;30656;30657	30656					0.0888321748270755
VPDPNVIKL	9	Unmodified	_VPDPNVIKL_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.8004455566406	2	497.800217	993.585882	0.28295	0.00014085	0.057755	2.875E-05	0.3407	0.0001696	497.80016889287583	56.092	0.86291	56.159	55.843	56.706	0.066448					85	32	3	0	0	0	0.010553	3	12047	11999;12047;12093		65.474	33.168	1	1166300			22613	3655	14925	15076	30658;30659;30660	30659					0.0888321748270755
VPDSPENEL	9	Unmodified	_VPDSPENEL_					0	0	0		ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ	ENSG00000132849|ENST00000642238|PATJ	ENSG00000132849|ENST00000642238|PATJ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.235107421875	2	500.235104	998.455655	0.40906	0.00020462	0.35456	0.00017736	0.76362	0.00038199	500.2351285619225	47.632	0.64661	47.632	47.372	48.018	0					34	21	2	0	0	0	0.14444	2	9621	9621;9672		24.991	12.75	1	121530			22614	2601	14926	15077	30661;30662	30661					-0.043634233069496986
VPDSPENEL	9	Unmodified	_VPDSPENEL_					0	0	0		ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ	ENSG00000132849|ENST00000642238|PATJ	ENSG00000132849|ENST00000642238|PATJ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2351379394531	2	500.235104	998.455655	0.52493	0.00026259	-0.060306	-3.0167E-05	0.46462	0.00023242	500.2349647333991	47.545	0.57475	47.628	47.376	47.951	0.082592					41	22	2	0	0	0	0.048027	2	9434	9434;9477		43.772	22.235	1	135380			22615	2601	14926	15077	30663;30664	30663					-0.043634233069496986
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant;nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.3118286132812	2	585.311677	1168.6088	0.23914	0.00013997	-0.089697	-5.2501E-05	0.14945	8.7473E-05	585.3115528779712	46.173	0.66353	46.173	45.808	46.472	0					52	22	3	0	0	0	0.30927	1	9133	9133		17.049	12.152	1	134300			22616	4058	14927	15078	30665	30665					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant;nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.3125	2	585.311677	1168.6088	0.43408	0.00025407	0.036884	2.1589E-05	0.47097	0.00027566	585.3117488830429	46.047	0.6156	46.133	45.811	46.426	0.085621					41	22	3	0	0	0	0.30985	1	9061	9061		12.856	8.6664	1	132050			22617	4058	14927	15078	30666	30666					0.031241918095247456
VPDTESETRIL	11	Unmodified	_VPDTESETRIL_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3295288085938	2	630.327524	1258.6405	0.3457	0.00021791	0.17627	0.00011111	0.52198	0.00032902	630.3278657383171	47.074	0.52108	47.157	46.91	47.431	0.083096					31	19	2	0	0	0	0.36721	1	9262	9262		10.315	7.0339	1	87970			22618	2305	14928	15079	30667	30667					0.021521397728292868
VPDTESETRIL	11	Unmodified	_VPDTESETRIL_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	630.327524	1258.6405	0.23694	0.00014935	0.097927	6.1726E-05	0.33487	0.00021107	630.3274304580607	47.121	0.67924	47.121	46.904	47.583	0	-0.01779	-1.6599E-05	NaN	10.315	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68440			22619	2305	14928	15079							0.021521397728292868
VPEAWEEL	8	Unmodified	_VPEAWEEL_					0	0	0		ENSG00000137185|ENST00000252207|ZSCAN9;nc|ENSG00000137185|O15535-2|ZSCAN9	ENSG00000137185|ENST00000252207|ZSCAN9	ENSG00000137185|ENST00000252207|ZSCAN9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7370910644531	2	486.737283	971.460012	-0.12778	-6.2194E-05	0.53898	0.00026234	0.4112	0.00020015	486.73745956100925	72.027	0.99815	72.027	71.584	72.582	0					61	34	2	0	0	0	0.52502	1	17088	17088		9.3474	0	1	190080			22620	2835	14929	15080	30668	30668					-0.026859140933765957
VPEDVEQQL	9	Unmodified	_VPEDVEQQL_					0	0	0		ENST00000534255.1_1_8:145193835-145194452:+|nuORF;ENSG00000235173|ENST00000347708|HGH1	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7637939453125	2	528.764029	1055.5135	0.1737	9.1844E-05	-1.4346	-0.00075854	-1.2609	-0.0006667	528.7637945855112	50.872	0.87975	50.872	50.595	51.475	0					49	28	2	0	0	0	0.026209	1	10576	10576		53.833	23.196	1	251920			22621	5627	14930	15081	30669	30669					-0.012031613815224773
VPEEKAAEL	9	Unmodified	_VPEEKAAEL_					0	0	0		ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23	ENST00000484231.1_1_3:99998514-100002656:+|nuORF	ENST00000484231.1_1_3:99998514-100002656:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.26373291015625	2	493.263665	984.512776	0.1082	5.337E-05	0.093364	4.6053E-05	0.20156	9.9423E-05	493.2636496270948	34.369	1.0884	34.369	34.091	35.18	0					99	41	3	0	0	0	0.0056336	3	5617	5572;5617;5663		80.676	28.408	1	1042000			22622	518	14931	15082	30670;30671;30672	30671					0.01990043969431099
VPEEKAAEL	9	Unmodified	_VPEEKAAEL_					0	0	0		ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23	ENST00000484231.1_1_3:99998514-100002656:+|nuORF	ENST00000484231.1_1_3:99998514-100002656:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.263671875	2	493.263665	984.512776	0.12074	5.9558E-05	0.096473	4.7587E-05	0.21722	0.00010714	493.26362630952826	34.321	0.80762	34.398	34.15	34.957	0.076244					86	34	3	0	0	0	0.016057	2	5442	5442;5481		61.09	17.232	1	811840			22623	518	14931	15082	30673;30674	30673					0.01990043969431099
VPELEEVARVL	11	Unmodified	_VPELEEVARVL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.3582153320312	2	627.358628	1252.7027	0.17501	0.00010979	-0.10872	-6.8207E-05	0.06629	4.1588E-05	627.3582160231113	71.508	0.45733	71.508	71.269	71.726	0					30	15	3	0	0	0	0.03648	2	16857	16857;16865		60.943	48.071	1	226070			22624	1440	14932	15083	30675;30676	30675					0.08645910911809551
VPELEEVARVL	11	Unmodified	_VPELEEVARVL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.3587646484375	2	627.358628	1252.7027	0.35664	0.00022374	-0.59408	-0.0003727	-0.23744	-0.00014896	627.3580677367399	71.399	0.3898	71.457	71.318	71.707	0.058578					28	13	3	0	0	0	0.03648	1	16691	16691		60.943	47.329	1	232120			22625	1440	14932	15083	30677	30677					0.08645910911809551
VPENHSVAL	9	Unmodified	_VPENHSVAL_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2562255859375	2	483.256174	964.497795	-0.1749	-8.4521E-05	-0.046956	-2.2692E-05	-0.22186	-0.00010721	483.2563100687885	35.099	1.945	35.099	34.718	36.663	0					229	73	5	0	0	0	1.8728E-05	6	5801	5751;5801;5846;5890;5936;5977		140.63	81.954	1	3387500			22626	4266	14933	15084	30678;30679;30680;30681;30682;30683	30679					0.01412596892100737
VPENHSVAL	9	Unmodified	_VPENHSVAL_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2562561035156	2	483.256174	964.497795	-0.14049	-6.7893E-05	-0.062416	-3.0163E-05	-0.20291	-9.8056E-05	483.2562592880751	35.048	1.8178	35.127	34.736	36.553	0.078827					213	72	5	0	0	0	0.00066972	7	5699	5609;5655;5699;5742;5784;5827;5870		128.93	76.664	1	3119000			22627	4266	14933	15084	30684;30685;30686;30687;30688;30689;30690	30686					0.01412596892100737
VPEPDGHII	9	Unmodified	_VPEPDGHII_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.75897216796875	2	488.758549	975.502546	-0.0031158	-1.5229E-06	0.45708	0.0002234	0.45396	0.00022188	488.7585343099506	46.507	0.3939	46.507	46.156	46.55	0					25	15	2	0	0	0	0.074645	2	9203	9203;9249		37.974	17.52	1	176500			22628	3240	14934	15085	30691;30692	30691					0.013814810348662832
VPEQSAVTL	9	Unmodified	_VPEQSAVTL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.25830078125	2	472.258382	942.502212	-0.051321	-2.4237E-05	0.12033	5.6826E-05	0.069007	3.2589E-05	472.2583514896923	51.215	0.99996	51.215	50.886	51.886	0					96	33	4	0	0	0	0.010235	3	10687	10636;10687;10731		66.457	17.228	1	1070000			22629	4075	14935	15086	30693;30694;30695	30694					0.028660613150123027
VPEQSAVTL	9	Unmodified	_VPEQSAVTL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2584228515625	2	472.258382	942.502212	-0.0037652	-1.7782E-06	0.12292	5.8049E-05	0.11915	5.6271E-05	472.258346305798	51.181	0.94886	51.251	50.883	51.832	0.069874					98	36	4	0	0	0	0.017478	3	10553	10507;10553;10596		60.074	18.234	1	915410			22630	4075	14935	15086	30696;30697;30698	30697					0.028660613150123027
VPETRPNHTIY	11	Unmodified	_VPETRPNHTIY_					0	0	0		ENST00000599570.5_1_19:41257313-41263396:+|nuORF;ENST00000598923.1_1_19:41257313-41268988:+|nuORF;ENSG00000077312|ENST00000243563|SNRPA	ENST00000599570.5_1_19:41257313-41263396:+|nuORF	ENST00000599570.5_1_19:41257313-41263396:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.89788818359375	3	442.89821	1325.6728	-0.070983	-3.1438E-05	0.86242	0.00038196	0.79143	0.00035052	442.8975959501955	45.343	0.53773	45.43	45.237	45.775	0.08754					26	20	2	0	0	0	0.41359	1	8787	8787		1.2148	0.4383	1	52044			22631	860	14936	15087	30699	30699					0.022989719664792574
VPFFCLPF	8	Unmodified	_VPFFCLPF_					0	0	0			REV__ENST00000513508.1_1_17:47781399-47782716:-|nuORF	REV__ENST00000513508.1_1_17:47781399-47782716:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2501525878906	2	485.248775	968.482997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.877	1	37.877	37.377	38.377	0								0	0	0	0.38822	1	6653	6653		0.79363	0	1		+		22632	12213	14937	15088	30700	30700					-0.0025056650961232663
VPFFFVYLV	9	Unmodified	_VPFFFVYLV_					0	0	0		ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7905883789062	2	565.817879	1129.6212	0.52479	0.00029693	-0.19288	-0.00010914	0.3319	0.0001878	566.3180401609286	97.694	0.23425	97.735	97.614	97.848	0.040855					18	12	2	0	0	0	0.24749	1	24669	24669		9.3474	0	1	123910			22633	4915	14938	15089	30701	30701					0.06157880010505323
VPFFSDPIW	9	Unmodified	_VPFFSDPIW_					0	0	0			REV__KCTD3|p.S45Pfs*4|1|0.24|ENSG00000136636|chr1:215573828-215573828|T/-|frameshift_variant	REV__KCTD3|p.S45Pfs*4|1|0.24|ENSG00000136636|chr1:215573828-215573828|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3080444335938	2	554.279118	1106.54368	0.51873	0.00028752	0.94935	0.00052621	1.4681	0.00081373	554.2804174436513	94.533	0.52343	94.533	94.343	94.866	0					39	19	3	0	0	0	0.17491	1	23864	23864		28.487	6.7402	1	96685	+		22634	12686	14939	15090	30702	30702					-0.00532757925657279
VPFFSDPIW	9	Unmodified	_VPFFSDPIW_					0	0	0			REV__KCTD3|p.S45Pfs*4|1|0.24|ENSG00000136636|chr1:215573828-215573828|T/-|frameshift_variant	REV__KCTD3|p.S45Pfs*4|1|0.24|ENSG00000136636|chr1:215573828-215573828|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.3080444335938	2	554.279118	1106.54368	0.53229	0.00029504	1.5524	0.00086046	2.0847	0.0011555	554.2805572318415	94.515	0.26843	94.553	94.37	94.639	0.038086					27	10	3	0	0	0	0.20845	1	23706	23706		21.747	4.8044	1	157820	+		22635	12686	14939	15090	30703	30703					-0.00532757925657279
VPFLSHLLL	9	Unmodified	_VPFLSHLLL_					0	0	0			REV__nc|ENSG00000175806|Q9UJ68-4|MSRA	REV__nc|ENSG00000175806|Q9UJ68-4|MSRA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2769165039062	2	519.820953	1037.62735	0.58731	0.00030529	-2.119	-0.0011015	-1.5317	-0.00079621	519.8197791937947	80.863	1.4981	80.887	80.046	81.544	0.023605					91	53	2	0	0	0	0.24263	1	19367	19367		12.532	0	1	175210	+		22636	10387	14940	15091	30704	30704					0.11004398242039315
VPFLSHLLL	9	Unmodified	_VPFLSHLLL_					0	0	0			REV__nc|ENSG00000175806|Q9UJ68-4|MSRA	REV__nc|ENSG00000175806|Q9UJ68-4|MSRA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	520.2769165039062	2	519.820953	1037.62735	0.27497	0.00014293	-0.84484	-0.00043917	-0.56987	-0.00029623	519.8203610118486	79.291	1.2046	79.318	79.071	80.276	0.026436					76	42	2	0	0	0	0.24263	1	19367	19367		12.532	0	1	395300	+		22637	10387	14940	15091	30705	30705					0.11004398242039315
VPFPFDETEL	10	Unmodified	_VPFPFDETEL_					0	0	0		ENST00000446265.3_1:149648157-149648721:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869;ENST00000456826.2_1_1:149262279-149263299:+|nuORF;ENSG00000176853|ENST00000334705|FAM91A1	ENST00000446265.3_1:149648157-149648721:+|nuORF	ENST00000446265.3_1:149648157-149648721:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2899780273438	2	597.289879	1192.56521	0.17457	0.00010427	0.72203	0.00043126	0.8966	0.00053553	597.2899373453736	86.143	0.75159	86.143	85.806	86.557	0					54	28	3	0	0	0	0.28643	1	21369	21369		24.021	7.0783	1	201150			22638	6542	14941	15092	30706	30706					-0.023374176875904595
VPFPFDETEL	10	Unmodified	_VPFPFDETEL_					0	0	0		ENST00000446265.3_1:149648157-149648721:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869;ENST00000456826.2_1_1:149262279-149263299:+|nuORF;ENSG00000176853|ENST00000334705|FAM91A1	ENST00000446265.3_1:149648157-149648721:+|nuORF	ENST00000446265.3_1:149648157-149648721:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.856689453125	2	597.289879	1192.56521	0.2353	0.00014054	0.44682	0.00026688	0.68212	0.00040743	597.2899047718531	86.123	0.74425	86.148	85.841	86.586	0.025169					47	27	2	0	0	0	0.31496	1	21181	21181		13.906	0	1	254990			22639	6542	14941	15092	30707	30707					-0.023374176875904595
VPFPPISW	8	Unmodified	_VPFPPISW_					0	0	0			REV__nc|ENSG00000072756|Q96Q11-2|TRNT1	REV__nc|ENSG00000072756|Q96Q11-2|TRNT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.75811767578125	2	471.757821	941.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.782	1	97.782	97.282	98.282	0								0	0	0	0.38796	1	24871	24871		14.582	3.7578	1		+		22640	8170	14942	15093	30708	30708					0.027998917367540344
VPFPSRTI	8	Unmodified	_VPFPSRTI_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	458.7077941894531	2	458.766178	915.517802	0.11795	5.4111E-05	0.93942	0.00043098	1.0574	0.00048509	458.76593852870684	34.197	0.57237	34.197	33.906	34.478	0					34	22	2	0	0	0	0.3576	1	5597	5597		0.79363	0	1	12630	+		22641	9019	14943	15094	30709	30709					0.05666392622708827
VPGFSTVYID	10	Unmodified	_VPGFSTVYID_					0	0	0			REV__GABRA6|p.R84Pfs*6|1|0.32|ENSG00000145863|chr5:161688964-161688965|-/T|frameshift_variant	REV__GABRA6|p.R84Pfs*6|1|0.32|ENSG00000145863|chr5:161688964-161688965|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7677612304688	2	549.279315	1096.54408	0.47759	0.00026233	0.85687	0.00047066	1.3345	0.00073299	549.2797083372463	74.951	0.27374	74.995	74.812	75.085	0.044037					12	9	2	0	0	0	0.3016	1	17774	17774		21.537	4.5947	1	122480	+		22642	7985	14944	15095	30710	30710					-0.0003338299648021348
VPGFSTVYID	10	Unmodified	_VPGFSTVYID_					0	0	0			REV__GABRA6|p.R84Pfs*6|1|0.32|ENSG00000145863|chr5:161688964-161688965|-/T|frameshift_variant	REV__GABRA6|p.R84Pfs*6|1|0.32|ENSG00000145863|chr5:161688964-161688965|-/T|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	549.279315	1096.54408	0.53989	0.00029655	0.28268	0.00015527	0.82258	0.00045182	549.2794431397937	75.029	0.32503	75.029	74.823	75.148	0	0.016896	-0.00021877	NaN	21.537	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124040	+		22643	7985	14944	15095							-0.0003338299648021348
VPGPFLPAL	9	Unmodified	_VPGPFLPAL_					0	0	0			REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF	REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2251281738281	2	455.773471	909.53239	0.44556	0.00020308	-0.12042	-5.4884E-05	0.32514	0.00014819	455.77350658874843	92.958	0.41738	92.995	92.837	93.255	0.037369					23	17	2	0	0	0	0.26021	1	23199	23199		0	0	1	57891	+		22644	11195	14945	15096	30711	30711					0.07400464770830695
VPGPPQGR	8	Unmodified	_VPGPPQGR_					0	0	0		ENST00000484937.5_1_1:62582831-62626723:+|nuORF	ENST00000484937.5_1_1:62582831-62626723:+|nuORF	ENST00000484937.5_1_1:62582831-62626723:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.2264404296875	2	404.22722	806.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.679	1	27.762	27.262	28.262	0.082134								0	0	0	0.38822	1	3488	3488		2.3027	0	1				22645	6776	14946	15097	30712	30712					0.02892379757327035
VPGPPQYR	8	Unmodified	_VPGPPQYR_					0	0	0		ENST00000410074.5_2_8:25042331-25128363:+|nuORF	ENST00000410074.5_2_8:25042331-25128363:+|nuORF	ENST00000410074.5_2_8:25042331-25128363:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.24786376953125	2	457.248152	912.481751	0.0044393	2.0298E-06	-0.08183	-3.7416E-05	-0.07739	-3.5387E-05	457.2480402175006	32.147	1.4213	32.147	31.957	33.378	0					125	60	3	0	0	0	0.53858	1	5063	5063		2.3027	0	1	361570			22646	6402	14947	15098	30713	30713					0.022009354458418784
VPGPPYLGR	9	Unmodified	_VPGPPYLGR_					0	0	0			REV__ENST00000416255.5_1_2:101179722-101179833:+|nuORF	REV__ENST00000416255.5_1_2:101179722-101179833:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.27130126953125	2	478.271627	954.528701	-0.3775	-0.00018055	-0.21491	-0.00010278	-0.5924	-0.00028333	478.27158481687275	43.616	1.2389	43.616	43.263	44.502	0					108	43	3	0	0	0	0.25209	1	8468	8468		12.532	0	1	581960	+		22647	11797	14948	15099	30714	30714					0.049617949970070185
VPGPPYLGR	9	Unmodified	_VPGPPYLGR_					0	0	0			REV__ENST00000416255.5_1_2:101179722-101179833:+|nuORF	REV__ENST00000416255.5_1_2:101179722-101179833:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.271484375	2	478.271627	954.528701	-0.28949	-0.00013846	-0.081067	-3.8772E-05	-0.37056	-0.00017723	478.2716360033821	43.513	1.2098	43.602	43.186	44.396	0.088921					101	42	4	0	0	0	0.25209	1	8318	8318		12.532	1.7076	1	580010	+		22648	11797	14948	15099	30715	30715					0.049617949970070185
VPHDAPFAL	9	Unmodified	_VPHDAPFAL_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-3|EBPL	REV__nc|ENSG00000123179|Q9BY08-3|EBPL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7480163574219	2	483.75581	965.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.563	1	38.65	38.15	39.15	0.08688								0	0	0	0.2428	1	6734	6734		10.824	1.4765	1		+		22649	12783	14949	15100	30716	30716					0.012938022430262208
VPHWNFMYI	9	Unmodified	_VPHWNFMYI_					0	0	0			REV__ENST00000542411.5_1_11:61123996-61125228:-|nuORF	REV__ENST00000542411.5_1_11:61123996-61125228:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2965698242188	2	603.791869	1205.56919	0.29161	0.00017607	2.6221	0.0015832	2.9137	0.0017593	603.7932481274597	33.987	0.33777	34.064	33.883	34.221	0.076244					19	13	2	0	0	0	0.32112	1	5372	5372		3.9444	0.66309	1	19075	+		22650	9878	14950	15101	30717	30717					-0.025376066749004167
VPHWNFMYI	9	Unmodified	_VPHWNFMYI_					0	0	0			REV__ENST00000542411.5_1_11:61123996-61125228:-|nuORF	REV__ENST00000542411.5_1_11:61123996-61125228:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2965698242188	2	603.791869	1205.56919	0.29161	0.00017607	2.6221	0.0015832	2.9137	0.0017593	603.7932481274597	33.987	0.33777	34.064	33.883	34.221	0.076244					19	13	2	0	0	0	0.25644	1	5372	5372		3.9444	0.66309	1	19075	+		22651	9878	14950	15101	30718	30718					-0.025376066749004167
VPIFTEEFL	9	Unmodified	_VPIFTEEFL_					0	0	0		nc|ENSG00000064961|Q9P0W2-2|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	nc|ENSG00000064961|Q9P0W2-2|HMG20B	nc|ENSG00000064961|Q9P0W2-2|HMG20B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7924194335938	2	547.792058	1093.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.834	1	88.867	88.367	89.367	0.032257								0	0	0	0.035211	1	21989	21989		54.774	27.89	1				22652	672	14951	15102	30719	30719					0.026520915259425237
VPILFEETF	9	Unmodified	_VPILFEETF_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7765502929688	2	547.792058	1093.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.327	1	88.327	87.827	88.827	0								0	0	0	0.17567	1	21997	21997		21.747	9.2151	1				22653	1452	14952	15103	30720	30720					0.026520915259425237
VPILLVLRKLI	11	Unmodified	_VPILLVLRKLI_					0	0	0			REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.30633544921875	3	426.307481	1275.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116	1	116	115.5	116.5	0								0	0	0	0.34212	1	29557	29557		0	0	1		+		22654	13111	14953	15104	30721	30721					0.27370001632266394
VPILLVLRKLI	11	Unmodified	_VPILLVLRKLI_					0	0	0			REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.3064270019531	3	426.307481	1275.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.68	1	117.68	117.18	118.18	0								0	0	0	0.34212	1	29832	29832		0	0	1		+		22655	13111	14953	15104	30722	30722					0.27370001632266394
VPILLVLRKLI	11	Unmodified	_VPILLVLRKLI_					0	0	0			REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.30645751953125	3	426.307481	1275.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.87	1	117.87	117.37	118.37	0								0	0	0	0.34212	1	29862	29862		0	0	1		+		22656	13111	14953	15104	30723	30723					0.27370001632266394
VPILSEEEL	9	Unmodified	_VPILSEEEL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7789306640625	2	514.779148	1027.54374	0.56817	0.00029248	0.051267	2.6391E-05	0.61943	0.00031887	514.779035465921	69.53	0.58161	69.53	69.379	69.961	0					34	19	2	0	0	0	0.074645	1	16270	16270		37.974	12.575	1	204300			22657	2725	14954	15105	30724	30724					0.031071972836798523
VPILSEEEL	9	Unmodified	_VPILSEEEL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7791748046875	2	514.779148	1027.54374	0.30818	0.00015864	0.20385	0.00010494	0.51202	0.00026358	514.7792142829783	69.419	0.47655	69.481	69.358	69.834	0.062126					31	16	3	0	0	0	0.037705	1	16095	16095		46.021	6.0636	1	147450			22658	2725	14954	15105	30725	30725					0.031071972836798523
VPINVVETL	9	Unmodified	_VPINVVETL_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.292236328125	2	492.292225	982.569897	0.15592	7.6758E-05	0.23049	0.00011347	0.3864	0.00019022	492.2922232580207	71.936	0.68021	71.936	71.701	72.381	0					67	23	4	0	0	0	0.0010022	2	16998	16998;17045		123.45	77.43	1	1878600			22659	1185	14955	15106	30726;30727	30726					0.07791511245807214
VPINVVETL	9	Unmodified	_VPINVVETL_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.29241943359375	2	492.292225	982.569897	0.17687	8.7071E-05	0.29813	0.00014676	0.475	0.00023384	492.29224769110346	71.844	0.78399	71.9	71.677	72.461	0.055939					64	27	4	0	0	0	0.0005281	2	16817	16817;16869		131.27	72.589	1	1342600			22660	1185	14955	15106	30728;30729	30728					0.07791511245807214
VPIPPPHMVLG	11	Unmodified	_VPIPPPHMVLG_					0	0	0		nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000491449.5_1_22:50658476-50664613:-|nuORF;ATXN10-TUBGCP6|1|fusion;ATXN10-TUBGCP6|2|fusion	nc|ENSG00000128159|Q96RT7-2|TUBGCP6	nc|ENSG00000128159|Q96RT7-2|TUBGCP6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.344482421875	2	578.830995	1155.64744	0.6894	0.00039904	2.0935	0.0012118	2.7829	0.0016108	578.8321401801791	81.085	0.48665	81.108	80.771	81.257	0.023605					25	16	2	0	0	0	0.31072	1	19571	19571		3.5965	0.60125	1	91951			22661	2385	14956	15107	30730	30730					0.07583825910342057
VPIPYELANC	10	Unmodified	_VPIPYELANC_					0	0	0			REV__ENSG00000170891|ENST00000307746|CYTL1	REV__ENSG00000170891|ENST00000307746|CYTL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3062133789062	2	559.781167	1117.54778	0.6049	0.00033861	0.76492	0.00042819	1.3698	0.0007668	559.7809378409479	69.938	0.14088	69.938	69.85	69.991	0					5	4	2	0	0	0	0.29716	1	16384	16384		15.847	0	1	40668	+		22662	10230	14957	15108	30731	30731					-0.006290364942515225
VPIQDTFPFL	10	Unmodified	_VPIQDTFPFL_					0	0	0		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8191528320312	2	588.818607	1175.62266	0.60097	0.00035386	-0.1175	-6.9187E-05	0.48347	0.00028468	589.3198129270195	93.939	0.82747	93.939	93.599	94.426	0					88	39	3	0	0	0	0.12534	2	23672	23672;23711		42.312	18.292	1	1355800			22663	2009	14958	15109	30732;30733	30732					0.0418746930861289
VPIQDTFPFL	10	Unmodified	_VPIQDTFPFL_					0	0	0		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8190307617188	2	588.818607	1175.62266	0.62426	0.00036757	-0.25116	-0.00014789	0.3731	0.00021969	588.8185310334376	93.929	1.1855	93.967	93.656	94.841	0.038094					105	52	3	0	0	0	0.022949	1	23542	23542		65.474	27.5	1	1181900			22664	2009	14958	15109	30734	30734					0.0418746930861289
VPISCPECSE	10	Unmodified	_VPISCPECSE_					0	0	0		nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B	nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.318603515625	2	532.225368	1062.43618	0.62183	0.00033095	-0.75956	-0.00040426	-0.13773	-7.3305E-05	532.2250687716116	71.101	0.55368	71.16	70.91	71.464	0.058578					32	19	2	0	0	0	0.31771	1	16603	16603		4.3292	0.38484	1	123670			22665	1958	14959	15110	30735	30735					-0.09253838913741674
VPIYDLTL	8	Unmodified	_VPIYDLTL_					0	0	0			REV__ENST00000425497.5_1_20:48895601-48895982:+|nuORF	REV__ENST00000425497.5_1_20:48895601-48895982:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	467.2681579589844	2	467.268219	932.521884	0.33192	0.0001551	-0.12016	-5.6147E-05	0.21176	9.895E-05	467.2680934559826	88.597	0.76501	88.597	88.288	89.053	0					77	30	3	0	0	0	0.42348	1	22121	22121		23.148	0	1	1156800	+		22666	11829	14960	15111	30736	30736					0.05292437325749688
VPKGKADD	8	Unmodified	_VPKGKADD_					0	0	0		CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.2234802246094	2	415.224342	828.434132	1.0041	0.00041691	-1.6082	-0.00066777	-0.60415	-0.00025086	415.2235415425157	80.287	1.4791	80.287	79.223	80.702	0					82	51	3	0	0	0	0.53858	1	19527	19527		2.3027	0	1	486700			22667	130	14961	15112	30737	30737					0.013052364549821505
VPKGKADD	8	Unmodified	_VPKGKADD_					0	0	0		CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.2240905761719	2	415.224342	828.434132	0.43596	0.00018102	-0.89464	-0.00037148	-0.45868	-0.00019046	415.22378306078	80.252	0.63626	80.275	79.988	80.625	0.023613					60	22	3	0	0	0	0.3576	1	19403	19403		2.3027	0	1	444170			22668	130	14961	15112	30738	30738					0.013052364549821505
VPKIYKYY	8	Unmodified	_VPKIYKYY_					0	0	0		ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.8602905273438	2	537.305136	1072.59572	0.5528	0.00029702	-3.9149	-0.0021035	-3.3621	-0.0018065	537.3026462662309	55.698	0.35978	55.763	55.62	55.98	0.065128					24	12	3	0	0	0	0.3576	1	11892	11892		4.756	0.81161	1	118190			22669	2877	14962	15113	30739	30739					0.06232405488094628
VPKKPKRKKRR	11	Unmodified	_VPKKPKRKKRR_					0	0	0		ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.77349853515625	3	474.328161	1419.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.025	1	78.06	77.56	78.56	0.034485								0	0	0	0.34212	1	18703	18703		0	0	1				22670	3803	14963	15114	30740	30740					0.2694716582395813
VPKPRVKK	8	Unmodified	_VPKPRVKK_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;CHD2|p.K471Nfs*7|1|0.1|ENSG00000173575|chr15:92948985-92949021|AAGAAACAACCTGCATATTTAGGAGGGGAGAATCTGG/-|frameshift_variant;nc|ENSG00000173575|O14647-3|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.32672119140625	2	476.326737	950.63892	-0.0039696	-1.8908E-06	0.41103	0.00019578	0.40706	0.00019389	476.3267520639898	112.22	1.6309	112.23	111.98	113.62	0.014595					338	205	4	0	0	0	0.54097	1	28716	28716		0.69038	0	1	4447800			22671	4550	14964	15115	30741	30741					0.161626400560408
VPKRHPCLL	9	Unmodified	_VPKRHPCLL_					0	0	0		ENST00000392615.9_1_17:72733144-72739442:+|nuORF;ENST00000528438.5_2_17:72732794-72739442:+|nuORF	ENST00000392615.9_1_17:72733144-72739442:+|nuORF	ENST00000392615.9_1_17:72733144-72739442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8168334960938	2	531.815679	1061.6168	0.81898	0.00043555	1.527	0.00081206	2.3459	0.0012476	531.81649407976	84.488	0.26257	84.488	84.423	84.686	0					24	16	2	0	0	0	0.31136	1	20850	20850		5.2307	2.3415	1	606210			22672	6315	14965	15116	30742	30742					0.08846092315957321
VPLARHQHREA	11	Unmodified	_VPLARHQHREA_					0	0	0			REV__ENST00000396275.2_1_11:18158991-18159231:+|nuORF	REV__ENST00000396275.2_1_11:18158991-18159231:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.9092102050781	3	438.577693	1312.71125	0.4746	0.00020815	-0.67294	-0.00029514	-0.19834	-8.6987E-05	438.5777559358071	46.908	0.55447	46.908	46.766	47.321	0					32	19	2	0	0	0	0.31072	1	9358	9358		4.7159	1.6437	1	60035	+		22673	11724	14966	15117	30743	30743					0.06740322391669906
VPLAVCGSA	9	Carbamidomethyl (C)	_VPLAVC(Carbamidomethyl (C))GSA_	VPLAVC(1)GSA		VPLAVC(54)GSA		0	1	0			REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF	REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2193908691406	2	437.228571	872.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.485	1	46.485	45.985	46.985	0								0	0	0	0.037462	1	9253	9253		53.576	6.6547	1		+		22674	9530	14967	15118	30744	30744	15				0.0012646709998307415
VPLDQTVTL	9	Unmodified	_VPLDQTVTL_					0	0	0			REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF	REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.281982421875	2	493.281857	984.549162	0.52209	0.00025754	-0.24685	-0.00012176	0.27525	0.00013577	493.2816591003255	71.118	0.52432	71.118	70.861	71.386	0					39	17	3	0	0	0	0.031665	2	16757	16713;16757		49.933	0	1	373850	+		22675	10504	14968	15119	30745;30746	30746					0.056269208661547054
VPLDQTVTL	9	Unmodified	_VPLDQTVTL_					0	0	0			REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF	REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2817687988281	2	493.281857	984.549162	0.59836	0.00029516	-0.25772	-0.00012713	0.34064	0.00016803	493.2816349657856	71.015	0.42595	71.074	70.892	71.318	0.058578					34	15	3	0	0	0	0.30757	1	16546	16546		5.7319	0	1	392340	+		22676	10504	14968	15119	30747	30747					0.056269208661547054
VPLDQTVTL	9	Unmodified	_VPLDQTVTL_					0	0	0			REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF	REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.281857	984.549162	0.52209	0.00025754	-0.24685	-0.00012176	0.27525	0.00013577	493.2816591003255	71.118	0.52432	71.118	70.861	71.386	0	0.022184	5.5119E-06	NaN	49.933	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373850	+		22677	10504	14968	15119							0.056269208661547054
VPLDQTVTL	9	Unmodified	_VPLDQTVTL_					0	0	0			REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF	REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.281857	984.549162	0.59836	0.00029516	-0.25772	-0.00012713	0.34064	0.00016803	493.2816349657856	71.015	0.42595	71.074	70.892	71.318	0.058578	-0.022184	-5.215E-06	NaN	49.933	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392340	+		22678	10504	14968	15119							0.056269208661547054
VPLFRLRHFP	10	Unmodified	_VPLFRLRHFP_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.7138061523438	2	641.382574	1280.7506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.69	1	105.72	105.22	106.22	0.029739								0	0	0	0.33984	1	27049	27049		0.40072	0	1				22679	4424	14969	15120	30748	30748					0.12145074413160728
VPLIFTVDF	9	Unmodified	_VPLIFTVDF_					0	0	0			REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7805786132812	2	525.797143	1049.57973	0.16334	8.5883E-05	-0.0089559	-4.709E-06	0.15438	8.1174E-05	525.7970645226512	83.424	0.97728	83.446	83.164	84.142	0.021744					73	34	3	0	0	0	0.25209	1	20515	20515		12.532	0	1	721890	+		22680	8229	14970	15121	30749	30749					0.056926992511762364
VPLKCAML	8	Unmodified	_VPLKCAML_					0	0	0			REV__ENST00000451020.6_1_4:419554-419923:-|nuORF	REV__ENST00000451020.6_1_4:419554-419923:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.90936279296875	2	437.748085	873.481616	0.15709	6.8767E-05	-0.66264	-0.00029007	-0.50555	-0.0002213	437.74755237310643	46.899	0.50623	46.982	46.762	47.269	0.083096					36	19	3	0	0	0	0.35759	1	9189	9189		10.183	1.5901	1	215730	+		22681	11928	14971	15122	30750	30750					0.03981476129968087
VPLKVIRLTV	10	Unmodified	_VPLKVIRLTV_					0	0	0		nc|ENSG00000171790|Q499Z3-2|SLFNL1;ENSG00000171790|ENST00000302946|SLFNL1	nc|ENSG00000171790|Q499Z3-2|SLFNL1	nc|ENSG00000171790|Q499Z3-2|SLFNL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.3895263671875	2	569.389534	1136.76451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.07	1	115.08	114.58	115.58	0.013092								0	0	0	0.34018	1	29260	29260		0	0	1				22682	4459	14972	15123	30751	30751					0.2016030712156862
VPLLLPELL	9	Unmodified	_VPLLLPELL_					0	0	0		ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7837219238281	2	503.830986	1005.64742	0.24091	0.00012138	0.22795	0.00011485	0.46886	0.00023623	503.83103195031987	95.766	0.35279	95.805	95.669	96.022	0.038872					25	15	2	0	0	0	0.25051	1	24061	24061		7.9102	0	1	98818			22683	6516	14973	15124	30752	30752					0.14482149181981185
VPLPKALL	8	Unmodified	_VPLPKALL_					0	0	0		TSKU|p.E296K|1|0.13|ENSG00000182704|chr11:76796502-76796502|G/A|missense_variant	TSKU|p.E296K|1|0.13|ENSG00000182704|chr11:76796502-76796502|G/A|missense_variant	TSKU|p.E296K|1|0.13|ENSG00000182704|chr11:76796502-76796502|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.84674072265625	2	425.791664	849.568775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.736	1	95.736	95.236	96.236	0								0	0	0	0.38822	1	24248	24248		0	0	1				22684	13755	14974	15125	30753	30753					0.13797341667554974
VPLRYEQHS	9	Unmodified	_VPLRYEQHS_					0	0	0			REV__FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	REV__FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7510375976562	2	564.793455	1127.57236	0.1858	0.00010494	0.2581	0.00014578	0.4439	0.00025071	564.7934059869539	36.105	0.61661	36.187	35.966	36.583	0.081711					54	24	3	0	0	0	0.34754	1	5945	5945		0.45834	0	1	85952	+		22685	9637	14975	15126	30754	30754					0.013673597034767226
VPLSDLLEQTL	11	Unmodified	_VPLSDLLEQTL_					0	0	0		ENST00000548511.5_1_12:88439351-88442196:+|nuORF;ENST00000552847.5_1_12:88429328-88439561:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF	ENST00000548511.5_1_12:88439351-88442196:+|nuORF	ENST00000548511.5_1_12:88439351-88442196:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.7933349609375	2	614.345186	1226.67582	-0.044683	-2.7451E-05	0.23596	0.00014496	0.19127	0.00011751	614.3453163591402	90.735	0.47813	90.735	90.495	90.973	0					42	17	3	0	0	0	0.24342	1	22713	22713		40.725	17.95	1	176140			22686	2632	14976	15127	30755	30755					0.07154802300624397
VPLSDLLEQTL	11	Unmodified	_VPLSDLLEQTL_					0	0	0		ENST00000548511.5_1_12:88439351-88442196:+|nuORF;ENST00000552847.5_1_12:88429328-88439561:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF	ENST00000548511.5_1_12:88439351-88442196:+|nuORF	ENST00000548511.5_1_12:88439351-88442196:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.345186	1226.67582	-0.26238	-0.00016119	0.81062	0.000498	0.54824	0.00033681	614.345571140626	90.7	0.46191	90.735	90.504	90.966	0.035446	0.00025331	0.00042285	NaN	40.725	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265160			22687	2632	14976	15127							0.07154802300624397
VPLVALLVL	9	Unmodified	_VPLVALLVL_					0	0	0			REV__nc|ENSG00000204655|Q16653-12|MOG	REV__nc|ENSG00000204655|Q16653-12|MOG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.82830810546875	2	468.828246	935.64194	0.16084	7.5405E-05	-0.69434	-0.00032553	-0.5335	-0.00025012	468.8280737508161	102.84	0.58066	102.88	102.87	103.45	0.040916					84	54	2	0	0	0	0.31136	1	26350	26350		5.2307	0	1	279960	+		22688	10952	14977	15128	30756	30756					0.17154470390164533
VPMEDINL	8	Unmodified	_VPMEDINL_					0	0	0		tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.7336120605469	2	465.733686	929.452819	0.26422	0.00012305	-0.010024	-4.6687E-06	0.25419	0.00011839	465.73352822558604	78.755	0.86347	78.755	78.479	79.342	0					72	29	3	0	0	0	0.37883	1	19064	19064		28.487	0	1	788790			22689	13669	14978	15129	30757	30757					-0.014729699654594697
VPMEDINL	8	Unmodified	_VPMEDINL_					0	0	0		tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7333984375	2	465.733686	929.452819	0.11789	5.4907E-05	0.02217	1.0325E-05	0.14006	6.5232E-05	465.7335593733963	78.775	1.0211	78.805	78.476	79.497	0.030159					83	35	4	0	0	0	0.46914	1	18887	18887		16.942	0	1	977700			22690	13669	14978	15129	30758	30758					-0.014729699654594697
VPNAELRGRLL	11	Unmodified	_VPNAELRGRLL_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.8237915039062	2	619.372404	1236.73025	-0.1001	-6.1997E-05	-0.78846	-0.00048835	-0.88856	-0.00055035	619.3718497414375	95.527	0.74981	95.565	95.287	96.036	0.038872					60	35	2	0	0	0	0.31095	1	24110	24110		1.1933	0	1	607460			22691	2109	14979	15130	30759	30759					0.12135858962687962
VPNEEDPSL	9	Unmodified	_VPNEEDPSL_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2351989746094	2	500.235104	998.455655	0.064146	3.2088E-05	-1.6814	-0.00084109	-1.6173	-0.00080901	500.23519112411304	45.254	0.70461	45.341	44.935	45.64	0.08754					61	26	3	0	0	0	0.18398	1	8713	8713		20.415	0	1	161810			22692	1537	14980	15131	30760	30760					-0.043634233069496986
VPNFIFDEF	9	Unmodified	_VPNFIFDEF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000519042.2_1_8:126036861-126044688:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7710571289062	2	564.274032	1126.53351	0.5096	0.00028756	-0.73868	-0.00041682	-0.22908	-0.00012926	564.2736765456077	92.298	0.61726	92.298	92.037	92.654	0					45	23	3	0	0	0	0.20194	1	23177	23177		24.021	12.38	1	256370			22693	4047	14981	15132	30761	30761					-0.02469365650904365
VPNFIFDEF	9	Unmodified	_VPNFIFDEF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000519042.2_1_8:126036861-126044688:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2742919921875	2	564.274032	1126.53351	0.47219	0.00026644	-0.59236	-0.00033425	-0.12018	-6.7812E-05	564.2734944586571	92.279	0.56702	92.315	92.048	92.615	0.036522					34	19	3	0	0	0	0.24929	1	23031	23031		9.3831	1.473	1	227400			22694	4047	14981	15132	30762	30762					-0.02469365650904365
VPNLPQRF	8	Unmodified	_VPNLPQRF_					0	0	0		nc|ENSG00000105954|Q9HCQ7-2|NPVF;ENSG00000105954|ENST00000222674|NPVF	nc|ENSG00000105954|Q9HCQ7-2|NPVF	nc|ENSG00000105954|Q9HCQ7-2|NPVF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.77783203125	2	485.777077	969.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.481	1	56.548	56.048	57.048	0.066452								0	0	0	0.38822	1	12152	12152		2.8892	0.31174	1				22695	1495	14982	15133	30763	30763					0.053611973712691
VPNNKEEDEL	10	Unmodified	_VPNNKEEDEL_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7822265625	2	593.78295	1185.55135	0.25267	0.00015003	-1.3497	-0.00080144	-1.097	-0.00065141	593.7821287255871	56.949	1.0267	56.949	56.57	57.597	0					100	37	3	0	0	0	0.34138	1	12435	12435		18.146	1.0335	1	304250	+		22696	9287	14983	15134	30764	30764					-0.03400695186701341
VPNNKEEDEL	10	Unmodified	_VPNNKEEDEL_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.7824096679688	2	593.78295	1185.55135	0.30788	0.00018282	-1.4996	-0.00089044	-1.1917	-0.00070763	593.7820176907709	56.91	1.1759	56.976	56.461	57.637	0.066452					96	43	3	0	0	0	0.34138	1	12288	12288		18.146	1.9972	1	265570	+		22697	9287	14983	15134	30765	30765					-0.03400695186701341
VPNRQSPWA	9	Unmodified	_VPNRQSPWA_					0	0	0			REV__SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|50|1|anti-sense	REV__SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|50|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2528076171875	2	527.775065	1053.53558	-0.12771	-6.7402E-05	-1.092	-0.00057634	-1.2197	-0.00064374	527.7742570796264	31.259	0.48975	31.259	31.049	31.539	0					53	23	3	0	0	0	0.34754	1	4660	4660		0.45834	0.057624	1	40711	+		22698	13012	14984	15135	30766	30766					0.010951078775633505
VPPAKILIV	9	Unmodified	_VPPAKILIV_					0	0	0		ENSG00000112992|ENST00000344920|NNT;NNT|p.A289Cfs*10|1|0.43|ENSG00000112992|chr5:43628286-43628287|-/T|frameshift_variant	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	475.3372802734375	2	475.325871	948.637189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.5	1	111.51	111.01	112.01	0.015678								0	0	0	0.29233	1	28430	28430		0.6015	0	1				22699	1783	14985	15136	30767	30767					0.16081586247435098
VPPALVYA	8	Unmodified	_VPPALVYA_					0	0	0		nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2;ENST00000588196.1_1_19:11468409-11470405:+|nuORF;nc|ENSG00000105520|Q96GM1|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.2439270019531	2	415.244547	828.47454	0.64885	0.00026943	-1.481	-0.00061497	-0.83212	-0.00034554	415.2440003670828	99.721	0.5515	99.721	99.485	100.04	0					46	29	2	0	0	0	0.54081	1	25459	25459		0.79363	0	1	678670			22700	1476	14986	15137	30768	30768					0.053442028454128376
VPPDYEDEF	9	Unmodified	_VPPDYEDEF_					0	0	0		ENSG00000121764|ENST00000403528|HCRTR1	ENSG00000121764|ENST00000403528|HCRTR1	ENSG00000121764|ENST00000403528|HCRTR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7349243164062	2	555.734937	1109.45532	0.41593	0.00023115	-0.78206	-0.00043462	-0.36613	-0.00020347	555.734476143221	37.051	2.7421	37.051	36.128	38.87	0					184	101	2	0	0	0	0.34704	1	6801	6801		0.52476	0.52476	1	319580			22701	2162	14987	15138	30769	30769					-0.0950284302680302
VPPKLWMCL	9	Unmodified	_VPPKLWMCL_					0	0	0			REV__ENST00000591629.1_1_18:37115535-37380052:-|nuORF	REV__ENST00000591629.1_1_18:37115535-37380052:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.8189697265625	2	543.795566	1085.57658	0.061969	3.3698E-05	-0.56983	-0.00030987	-0.50786	-0.00027617	543.7951814616231	44.792	1.5835	44.88	43.682	45.265	0.087543					82	56	2	0	0	0	0.2491	1	8256	8256		8.5933	0	1	67099	+		22702	12584	14988	15139	30770	30770					0.0372140960116667
VPPLLLLGLVV	11	Unmodified	_VPPLLLLGLVV_					0	0	0		ENSG00000206013|ENST00000382614|IFITM5	ENSG00000206013|ENST00000382614|IFITM5	ENSG00000206013|ENST00000382614|IFITM5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.26806640625	2	566.888835	1131.76312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.67	1	22.772	22.272	23.272	0.10178								0	0	0	0.34212	1	2086	2086		0	0	1				22703	5524	14989	15140	30771	30771					0.20250673032819577
VPPPMPLP	8	Unmodified	_VPPPMPLP_					0	0	0		ENST00000461735.1_2_7:150773431-150773557:+|nuORF	ENST00000461735.1_2_7:150773431-150773557:+|nuORF	ENST00000461735.1_2_7:150773431-150773557:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.2491455078125	2	424.24095	846.467346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.524	1	99.566	99.066	100.07	0.042839								0	0	0	0.38822	1	25245	25245		2.8892	0	1				22704	6612	14990	15141	30772	30772					0.03797146973340659
VPPPTTALID	10	Unmodified	_VPPPTTALID_					0	0	0			REV__MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	REV__MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2791748046875	2	512.289682	1022.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.86	1	53.86	53.36	54.36	0								0	0	0	0.33092	1	11488	11488		10.824	2.9138	1		+		22705	9057	14991	15142	30773	30773					0.05443207383189019
VPPSPTPLSL	10	Unmodified	_VPPSPTPLSL_					0	0	0		ENST00000465703.5_1_6:31930825-31931197:+|nuORF	ENST00000465703.5_1_6:31930825-31931197:+|nuORF	ENST00000465703.5_1_6:31930825-31931197:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2926940917969	2	504.292225	1006.5699	0.19544	9.8558E-05	0.40496	0.00020422	0.6004	0.00030278	504.2924020538847	87.669	0.23251	87.699	87.534	87.767	0.030037					13	8	2	0	0	0	0.38912	1	21652	21652		13.042	0	1	83583			22706	6634	14992	15143	30774	30774					0.06687511245809219
VPPTVESSPA	10	Unmodified	_VPPTVESSPA_					0	0	0		TOX4|p.E517A|1|0.14|ENSG00000092203|chr14:21493166-21493166|A/C|missense_variant	TOX4|p.E517A|1|0.14|ENSG00000092203|chr14:21493166-21493166|A/C|missense_variant	TOX4|p.E517A|1|0.14|ENSG00000092203|chr14:21493166-21493166|A/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.2563781738281	2	492.25584	982.497126	6.1693E-05	3.0369E-08	0.14472	7.1237E-05	0.14478	7.1267E-05	492.2558069631185	33.639	0.55332	33.639	33.404	33.958	0					28	19	2	0	0	0	0.44246	1	5375	5375		6.2058	0	1	31984			22707	13437	14993	15144	30775	30775					0.0051775745238273885
VPPWYLCIF	9	Unmodified	_VPPWYLCIF_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2;SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant;ENST00000468355.5_1_20:4850526-4913271:-|nuORF	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.2933959960938	2	569.293714	1136.57287	-0.24607	-0.00014009	-0.04354	-2.4787E-05	-0.28961	-0.00016487	569.2935880230967	25.215	0.4822	25.215	25.08	25.562	0					74	38	3	0	0	0	0.35102	1	2961	2961		0	0	1	54764			22708	1025	14994	15145	30776	30776					0.010050630989326237
VPPYGMYPPP	10	Unmodified	_VPPYGMYPPP_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.751953125	2	559.272978	1116.5314	0.1801	0.00010073	-0.45187	-0.00025272	-0.27176	-0.00015199	559.2727584783743	33.694	0.51476	33.768	33.546	34.061	0.074322					32	22	2	0	0	0	0.31829	1	5245	5245		1.8442	0	1	61887			22709	2179	14995	15146	30777	30777					-0.0222011766036303
VPQTPCQATLN	11	Unmodified	_VPQTPCQATLN_					0	0	0			REV__ENSG00000235268|ENST00000450979|KDM4E	REV__ENSG00000235268|ENST00000450979|KDM4E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3062133789062	2	586.29243	1170.57031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.143	1	91.143	90.643	91.643	0								0	0	0	0.3035	1	22852	22852		13.615	2.7909	1		+		22710	11050	14996	15147	30778	30778					-0.008154370966394708
VPRGMSLLWP	10	Unmodified	_VPRGMSLLWP_					0	0	0			REV__ENST00000325147.13_1_11:204707-204863:-|nuORF	REV__ENST00000325147.13_1_11:204707-204863:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3203125	2	578.320794	1154.62703	0.37728	0.00021819	-0.071842	-4.1548E-05	0.30544	0.00017664	578.320677221397	86.551	1.9141	86.579	85.666	87.58	0.027573					143	78	3	0	0	0	0.45627	1	21435	21435		3.5965	0.31518	1	541340	+		22711	11407	14997	15148	30779	30779					0.05590655250534837
VPRLWRARG	9	Unmodified	_VPRLWRARG_					0	0	0			REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF	REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.296630859375	2	555.835791	1109.65703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.493	1	20.493	19.993	20.993	0								0	0	0	0.29525	1	1626	1626		0	0	1		+		22712	12352	14998	15149	30780	30780					0.1065877503071988
VPRLWRARG	9	Unmodified	_VPRLWRARG_					0	0	0			REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF	REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.79052734375	2	555.835791	1109.65703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.76	1	23.76	23.26	24.26	0								0	0	0	0.29525	1	2496	2496		0	0	1		+		22713	12352	14998	15149	30781	30781					0.1065877503071988
VPRLWRARG	9	Unmodified	_VPRLWRARG_					0	0	0			REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF	REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8360595703125	2	555.835791	1109.65703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.303	1	16.381	15.881	16.881	0.077806								0	0	0	0.29525	1	639	639		0	0	1		+		22714	12352	14998	15149	30782	30782					0.1065877503071988
VPRPHRPR	8	Unmodified	_VPRPHRPR_					0	0	0			REV__ENST00000377735.7_1_19:46286319-46286718:-|nuORF	REV__ENST00000377735.7_1_19:46286319-46286718:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2745361328125	2	507.807034	1013.59952	0.13135	6.6701E-05	-1.4595	-0.00074117	-1.3282	-0.00067447	507.8063415453549	49.35	0.426	49.35	49.195	49.621	0					19	14	2	0	0	0	0.35759	1	10086	10086		9.3474	0	1	93297	+		22715	11653	14999	15150	30783	30783					0.09325932825174732
VPRQESLL	8	Unmodified	_VPRQESLL_					0	0	0			REV__ENSG00000100314|ENST00000216144|CABP7	REV__ENSG00000100314|ENST00000216144|CABP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2597961425781	2	471.274367	940.53418	-0.41176	-0.00019405	0.082172	3.8726E-05	-0.32959	-0.00015533	471.27437191315744	42.823	0.33581	42.913	42.781	43.116	0.089764					16	12	2	0	0	0	0.53257	1	8043	8043		6.3541	0	1	34085	+		22716	8382	15000	15151	30784	30784					0.06153473788822339
VPRQESLL	8	Unmodified	_VPRQESLL_					0	0	0			REV__ENSG00000100314|ENST00000216144|CABP7	REV__ENSG00000100314|ENST00000216144|CABP7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.2320556640625	2	471.274367	940.53418	-0.41176	-0.00019405	0.082172	3.8726E-05	-0.32959	-0.00015533	471.27437191315744	42.823	0.33581	42.913	42.781	43.116	0.089764					16	12	2	0	0	0	0.3576	1	8062	8062		6.3541	0	1	34085	+		22717	8382	15000	15151	30785	30785					0.06153473788822339
VPRRRRPDPRH	11	Unmodified	_VPRRRRPDPRH_					0	0	0			REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.28350830078125	3	481.283503	1440.82868	0.21359	0.0001028	0.058648	2.8226E-05	0.27224	0.00013102	481.2834553790044	96.832	2.3611	96.872	96.005	98.366	0.039772					283	122	4	0	0	0	0.41359	1	24392	24392		1.2148	0.10508	1	823200	+		22718	11382	15001	15152	30786	30786					0.12589900051102632
VPRSFDELG	9	Unmodified	_VPRSFDELG_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.26171875	2	510.261456	1018.50836	0.17971	9.1698E-05	0.0333	1.6992E-05	0.21301	0.00010869	510.26131684696804	48.538	0.45934	48.538	48.371	48.83	0					30	15	3	0	0	0	0.26684	1	9914	9914		10.824	0.75	1	87623			22719	2533	15002	15153	30787	30787					-0.00015420453473780071
VPRSFDELG	9	Unmodified	_VPRSFDELG_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	510.261456	1018.50836	0.17971	9.1698E-05	0.0333	1.6992E-05	0.21301	0.00010869	510.26131684696804	48.538	0.45934	48.538	48.371	48.83	0	0.00012596	-5.2904E-05	NaN	10.824	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87623			22720	2533	15002	15153							-0.00015420453473780071
VPSGPMQVFP	10	Unmodified	_VPSGPMQVFP_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3184814453125	2	529.770603	1057.52665	0.36072	0.0001911	0.20479	0.00010849	0.56552	0.00029959	530.2721894439832	61.398	0.41583	61.398	61.032	61.447	0					26	14	2	0	0	0	0.31585	1	13685	13685		10.824	0	1	194900	+		22721	9633	15003	15154	30788	30788					0.00018998196878783347
VPSGPPDVL	9	Unmodified	_VPSGPPDVL_					0	0	0		ENST00000461141.5_1_3:183952309-183959823:+|nuORF;ENSG00000145198|ENST00000691901|VWA5B2	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7423400878906	2	440.742368	879.470183	0.13948	6.1473E-05	-0.35117	-0.00015478	-0.21169	-9.3303E-05	440.74195740876695	39.572	0.49297	39.572	39.461	39.954	0					28	17	3	0	0	0	0.25209	1	7164	7164		12.532	3.1841	1	78898			22722	3238	15004	15155	30789	30789					0.025626936318417393
VPSHYFVL	8	Unmodified	_VPSHYFVL_					0	0	0			REV__ENSG00000182836|ENST00000377801|PLCXD3	REV__ENSG00000182836|ENST00000377801|PLCXD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2613830566406	2	481.260728	960.506903	-0.23378	-0.00011251	1.1202	0.00053911	0.88642	0.0004266	481.2613441202454	73.116	0.45984	73.116	72.853	73.313	0					21	15	2	0	0	0	0.53494	1	17340	17340		4.756	0	1	110820	+		22723	10578	15005	15156	30790	30790					0.025069902484233353
VPSKTLQEL	9	Unmodified	_VPSKTLQEL_					0	0	0			REV__PLCB1|p.A884Qfs*55|1|0.06|ENSG00000182621|chr20:8757158-8757159|-/CCACAGCCAG|frameshift_variant	REV__PLCB1|p.A884Qfs*55|1|0.06|ENSG00000182621|chr20:8757158-8757159|-/CCACAGCCAG|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2877197265625	2	507.795132	1013.57571	0.13255	6.7308E-05	0.033106	1.6811E-05	0.16565	8.4119E-05	507.79510106569705	49.417	0.64642	49.417	49.032	49.679	0					26	22	2	0	0	0	0.22912	1	10205	10205		13.042	7.3106	1	58086	+		22724	10570	15006	15157	30791	30791					0.06946609757483202
VPSLKQRSS	9	Unmodified	_VPSLKQRSS_					0	0	0		ENST00000496281.1_1_20:62321467-62323226:+|nuORF;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1	ENST00000496281.1_1_20:62321467-62323226:+|nuORF	ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2907409667969	2	501.290548	1000.56654	0.77457	0.00038829	-0.082864	-4.1539E-05	0.69171	0.00034675	501.2904008193115	80.898	3.0648	80.898	79.958	83.023	0					366	106	4	0	0	0	0.30005	2	19922	19922;19966		6.7232	0.51738	1	2422800			22725	5705	15007	15158	30792;30793	30792					0.06628261191804086
VPSLNKRV	8	Unmodified	_VPSLNKRV_					0	0	0			REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.7861328125	2	456.784902	911.55525	0.18281	8.3503E-05	2.957	0.0013507	3.1398	0.0014342	456.7859413055001	108.84	0.1097	108.86	108.81	108.92	0.019402					19	15	2	0	0	0	0.53817	1	27843	27843		2.5775	0	1	1037300	+		22726	9894	15008	15159	30794	30794					0.09593483888329501
VPSLNKRV	8	Unmodified	_VPSLNKRV_					0	0	0			REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	456.784902	911.55525	0.061487	2.8086E-05	2.7765	0.0012683	2.838	0.0012963	456.78594382271746	108.86	0.12228	108.86	108.8	108.92	0	-0.00043812	-5.4311E-05	NaN	2.5775	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495160	+		22727	9894	15008	15159							0.09593483888329501
VPSLNKRV	8	Unmodified	_VPSLNKRV_					0	0	0			REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	456.784902	911.55525	0.18281	8.3503E-05	2.957	0.0013507	3.1398	0.0014342	456.7859413055001	108.84	0.1097	108.86	108.81	108.92	0.019402	0.00043812	0.00011057	NaN	2.5775	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037300	+		22728	9894	15008	15159							0.09593483888329501
VPSPVTTQQTF	11	Unmodified	_VPSPVTTQQTF_					0	0	0			REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF	REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8154907226562	2	602.814053	1203.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.343	1	97.343	96.843	97.843	0								0	0	0	0.32927	1	24739	24739		4.5289	1.5336	1		+		22729	11960	15009	15160	30795	30795					0.01989075952269559
VPSTHYIY	8	Unmodified	_VPSTHYIY_					0	0	0		nc|ENSG00000140538|Q16288-2|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.24847412109375	2	490.247818	978.481082	-0.067607	-3.3144E-05	0.69973	0.00034304	0.63212	0.0003099	490.24777569806383	33.799	0.50162	33.799	33.404	33.906	0					37	17	4	0	0	0	0.53423	1	5445	5445		5.2307	1.6342	1	26342			22730	7512	15010	15161	30796	30796					-0.009019039938721107
VPTEENEM	8	Unmodified	_VPTEENEM_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.70245361328125	2	474.702583	947.390612	-0.14182	-6.7322E-05	-0.0073701	-3.4986E-06	-0.14919	-7.0821E-05	474.70252746851054	35.462	0.5582	35.462	35.314	35.872	0					34	20	2	0	0	0	0.48462	1	5941	5941		14.838	0	1	70208			22731	2130	15011	15162	30797	30797					-0.08518741104455785
VPTEENEM	8	Unmodified	_VPTEENEM_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.70263671875	2	474.702583	947.390612	-0.13836	-6.5679E-05	0.1417	6.7267E-05	0.0033446	1.5877E-06	474.7025224042648	35.423	0.48209	35.501	35.279	35.761	0.078827					30	18	2	0	0	0	0.53118	1	5788	5788		7.2892	0	1	72569			22732	2130	15011	15162	30798	30798					-0.08518741104455785
VPTLVEELI	9	Unmodified	_VPTLVEELI_					0	0	0		ENST00000478269.5_1_3:50380731-50381380:-|nuORF;nc|ENSG00000004838|O75800-2|ZMYND10;ENSG00000004838|ENST00000231749|ZMYND10	ENST00000478269.5_1_3:50380731-50381380:-|nuORF	ENST00000478269.5_1_3:50380731-50381380:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.8000183105469	2	506.799883	1011.58521	0.41871	0.0002122	-0.06146	-3.1148E-05	0.35725	0.00018105	506.79974069696834	100.79	0.37718	100.83	100.68	101.05	0.042831					39	22	2	0	0	0	0.32112	1	25665	25665		3.9444	0	1	120440			22733	339	15012	15163	30799	30799					0.07988378043000921
VPTTDVSQL	9	Unmodified	_VPTTDVSQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2558288574219	2	480.25584	958.497126	0.0015115	7.2593E-07	0.41628	0.00019992	0.4178	0.00020065	480.2559063058181	51.485	0.55029	51.554	51.31	51.86	0.069874					52	20	3	0	0	0	0.20194	1	10683	10683		24.021	0	1	240080			22734	2536	15013	15164	30800	30800					0.01621757452392103
VPTTDVSQL	9	Unmodified	_VPTTDVSQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	480.25584	958.497126	-0.097496	-4.6823E-05	0.64448	0.00030952	0.54698	0.00026269	480.2560222431687	51.541	0.59052	51.541	51.295	51.886	0	-0.0065463	0.0001258	NaN	24.021	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321090			22735	2536	15013	15164							0.01621757452392103
VPTTEEVDCI	10	Unmodified	_VPTTEEVDCI_					0	0	0		ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2671508789062	2	553.257722	1104.50089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.085	1	28.085	27.585	28.585	0								0	0	0	0.33711	1	3734	3734		3.5965	0	1				22736	1249	15014	15165	30801	30801					-0.047179408360761954
VPTYPKVIE	9	Unmodified	_VPTYPKVIE_					0	0	0			REV__ENSG00000065615|ENST00000369681|CYB5R4	REV__ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.2820434570312	2	523.30005	1044.58555	0.13011	6.8086E-05	-0.50367	-0.00026357	-0.37356	-0.00019549	523.2997629980727	89.31	0.37878	89.342	89.224	89.603	0.032257					24	13	2	0	0	0	0.29105	2	22171	22126;22171		7.9102	1.187	1	161320	+		22737	8102	15015	15166	30802;30803	30803					0.06503797762843533
VPVDAGELFWY	11	Unmodified	_VPVDAGELFWY_					0	0	0			REV__nc|ENSG00000105492|O43699-4|SIGLEC6	REV__nc|ENSG00000105492|O43699-4|SIGLEC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.3184814453125	2	648.318971	1294.62339	0.45078	0.00029225	1.9833	0.0012858	2.4341	0.0015781	648.3190979605052	93.918	0.53682	93.918	93.658	94.195	0					59	26	3	0	0	0	0.39569	1	23752	23752		5.2969	0.39987	1	745280	+		22738	8543	15016	15167	30804	30804					-0.012137360423366772
VPVDAGELFWY	11	Unmodified	_VPVDAGELFWY_					0	0	0			REV__nc|ENSG00000105492|O43699-4|SIGLEC6	REV__nc|ENSG00000105492|O43699-4|SIGLEC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3194580078125	2	648.318971	1294.62339	0.27248	0.00017665	0.26697	0.00017308	0.53945	0.00034973	648.3188775973114	93.853	0.55154	93.891	93.675	94.227	0.038086					50	26	2	0	0	0	0.39569	1	23583	23583		5.2969	1.1074	1	613080	+		22739	8543	15016	15167	30805	30805					-0.012137360423366772
VPVIVNNFG	9	Unmodified	_VPVIVNNFG_					0	0	0		nc|ENSG00000129159|P48547|KCNC1;nc|ENSG00000166006|Q96PR1-4|KCNC2;nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;nc|ENSG00000166006|Q96PR1-5|KCNC2;ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000166006|Q96PR1-3|KCNC2;nc|ENSG00000166006|Q96PR1-6|KCNC2;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000166006|Q96PR1-2|KCNC2;nc|ENSG00000116396|Q03721|KCNC4;ENSG00000166006|ENST00000549446|KCNC2;ENSG00000131398|ENST00000477616|KCNC3	nc|ENSG00000129159|P48547|KCNC1	nc|ENSG00000129159|P48547|KCNC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2169189453125	2	479.77146	957.528367	-0.58109	-0.00027879	-3.7276	-0.0017884	-4.3087	-0.0020672	479.7696546525831	19.912	0.16611	19.912	19.846	20.012	0					20	17	2	0	0	0	0.25989	1	1480	1480		0.52476	0.52476	1	9971.9			22740	1953	15017	15168	30806	30806					0.04790375277138992
VPVKDSWLL	9	Unmodified	_VPVKDSWLL_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8078002929688	2	528.808042	1055.60153	0.36885	0.00019505	-0.049688	-2.6275E-05	0.31916	0.00016877	528.8079496034278	62.297	0.79449	62.297	62.067	62.861	0					58	28	3	0	0	0	0.081383	1	14032	14032		36.506	2.3189	1	585550			22741	943	15018	15169	30807	30807					0.07595503999755238
VPVKDSWLL	9	Unmodified	_VPVKDSWLL_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8081665039062	2	528.808042	1055.60153	0.33915	0.00017935	-0.063792	-3.3734E-05	0.27536	0.00014561	528.8080045103023	62.199	0.85096	62.273	62.056	62.907	0.073421					53	29	3	0	0	0	0.048027	2	13878	13878;13926		43.772	7.7282	1	544820			22742	943	15018	15169	30808;30809	30808					0.07595503999755238
VPVLEVAGKR	10	Unmodified	_VPVLEVAGKR_					0	0	0			REV__ENST00000491154.1_1_X:153669338-153669692:+|nuORF	REV__ENST00000491154.1_1_X:153669338-153669692:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.8328247070312	2	534.332216	1066.64988	0.0053202	2.8427E-06	-3.4447	-0.0018406	-3.4394	-0.0018378	534.329189034712	109.21	0.16545	109.21	109.1	109.27	0					37	25	2	0	0	0	0.45945	1	28114	28114		2.9952	0.69251	1	338550	+		22743	12054	15019	15170	30810	30810					0.11921997639660731
VPVLMQCR	8	Unmodified	_VPVLMQCR_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14	REV__nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	473.2533264160156	2	473.254065	944.493578	-0.38392	-0.00018169	-0.94094	-0.0004453	-1.3249	-0.00062699	473.25355892548606	29.37	0.52335	29.37	29.155	29.678	0					69	29	3	0	0	0	0.53858	1	4161	4161		2.3027	0	1	76512	+		22744	12861	15020	15171	30811	30811					0.019110928731720378
VPVLMQCR	8	Unmodified	_VPVLMQCR_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14	REV__nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.2532958984375	2	473.254065	944.493578	-0.39129	-0.00018518	-0.7297	-0.00034534	-1.121	-0.00053051	473.2536100748283	29.269	0.48785	29.348	29.138	29.626	0.078287					69	28	3	0	0	0	0.53423	1	3945	3945		5.2307	0	1	57249	+		22745	12861	15020	15171	30812	30812					0.019110928731720378
VPVMLSNG	8	Unmodified	_VPVMLSNG_					0	0	0		ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.7183837890625	2	408.717839	815.421125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.962	1	82.962	82.462	83.462	0								0	0	0	0.38822	1	20365	20365		1.8442	0	1				22746	4865	15021	15172	30813	30813					0.006030820712680907
VPVNNPLRVI	10	Unmodified	_VPVNNPLRVI_					0	0	0			REV__ENST00000339566.7_1_2:74091641-74092025:+|nuORF	REV__ENST00000339566.7_1_2:74091641-74092025:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8471069335938	2	560.84549	1119.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.06	1	104.09	103.59	104.59	0.03791								0	0	0	0.33528	1	26595	26595		5.7319	2.1354	1		+		22747	11456	15022	15173	30814	30814					0.12137686530991232
VPVNTDLQIV	10	Unmodified	_VPVNTDLQIV_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2713012695312	2	549.313689	1096.61282	0.78691	0.00043226	-2.9999	-0.0016479	-2.213	-0.0012156	549.3120522395733	79.888	0.51707	79.888	79.711	80.228	0					25	17	2	0	0	0	0.31496	1	19490	19490		13.906	0	1	69866	+		22748	10881	15023	15174	30815	30815					0.06838281303225813
VPVNTLQN	8	Unmodified	_VPVNTLQN_					0	0	0		RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant;RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2;RAD54L2|p.G419Vfs*17|1|0.43|ENSG00000164080|chr3:51635705-51635705|G/-|frameshift_variant;ENST00000487093.5_1_3:51624427-51671126:+|nuORF	RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant	RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.7449035644531	2	442.745442	883.476331	0.17974	7.9581E-05	-1.474	-0.00065259	-1.2942	-0.00057301	442.7446808987788	82.806	0.3978	82.828	82.589	82.987	0.021744					21	13	2	0	0	0	0.53026	1	20164	20164		7.9102	2.1497	1	116370			22749	3981	15024	15175	30816	30816					0.029932118633723803
VPVNTLQN	8	Unmodified	_VPVNTLQN_					0	0	0		RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant;RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2;RAD54L2|p.G419Vfs*17|1|0.43|ENSG00000164080|chr3:51635705-51635705|G/-|frameshift_variant;ENST00000487093.5_1_3:51624427-51671126:+|nuORF	RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant	RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	442.745442	883.476331	0.57559	0.00025484	-1.5574	-0.00068954	-0.98182	-0.0004347	442.74464812430205	82.787	0.4904	82.787	82.651	83.141	0	-0.020237	-3.6575E-05	NaN	7.9102	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76344			22750	3981	15024	15175							0.029932118633723803
VPVRFPSGP	9	Unmodified	_VPVRFPSGP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC;REV__nc|ENSG00000136068|O75369-5|FLNB	REV__nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.2713928222656	2	478.271627	954.528701	-0.28949	-0.00013846	-0.081067	-3.8772E-05	-0.37056	-0.00017723	478.2716360033821	43.513	1.2098	43.602	43.186	44.396	0.088921					101	42	4	0	0	0	0.15282	1	8216	8216		24.021	0.87215	1	580010	+		22751	9236;9019	15025	15176	30817	30817					0.049617949970070185
VPVRRWPF	8	Unmodified	_VPVRRWPF_					0	0	0		ENST00000454741.5_1_22:28395954-28396164:+|nuORF	ENST00000454741.5_1_22:28395954-28396164:+|nuORF	ENST00000454741.5_1_22:28395954-28396164:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8084716796875	2	528.808711	1055.60287	0.36885	0.00019505	-1.3142	-0.00069498	-0.94539	-0.00049993	528.8079496034278	62.297	0.79449	62.297	62.067	62.861	0					58	28	3	0	0	0	0.3056	1	14081	14081		34.187	0.74243	1	585550			22752	6582	15026	15177	30818	30818					0.07729182879188556
VPVRRWPF	8	Unmodified	_VPVRRWPF_					0	0	0		ENST00000454741.5_1_22:28395954-28396164:+|nuORF	ENST00000454741.5_1_22:28395954-28396164:+|nuORF	ENST00000454741.5_1_22:28395954-28396164:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.808837890625	2	528.808711	1055.60287	0.34339	0.00018159	0.55797	0.00029506	0.90136	0.00047665	528.8086798509211	101.46	0.46027	101.46	101.23	101.69	0					68	28	3	0	0	0	0.49441	2	25972	25972;26058		13.508	13.508	1	239070			22753	6582	15026	15177	30819;30820	30819					0.07729182879188556
VPVRRWPF	8	Unmodified	_VPVRRWPF_					0	0	0		ENST00000454741.5_1_22:28395954-28396164:+|nuORF	ENST00000454741.5_1_22:28395954-28396164:+|nuORF	ENST00000454741.5_1_22:28395954-28396164:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.8095703125	2	528.808711	1055.60287	0.45402	0.00024009	0.6176	0.00032659	1.0716	0.00056668	528.8089079818826	101.35	0.49874	101.4	101.18	101.68	0.042656					66	29	3	0	0	0	0.49441	1	25787	25787		13.508	13.508	1	157760			22754	6582	15026	15177	30821	30821					0.07729182879188556
VPVRRWPF	8	Unmodified	_VPVRRWPF_					0	0	0		ENST00000454741.5_1_22:28395954-28396164:+|nuORF	ENST00000454741.5_1_22:28395954-28396164:+|nuORF	ENST00000454741.5_1_22:28395954-28396164:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	528.808711	1055.60287	0.45402	0.00024009	0.6176	0.00032659	1.0716	0.00056668	528.8089079818826	101.35	0.49874	101.4	101.18	101.68	0.042656	-0.034327	2.7196E-05	NaN	13.508	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157760			22755	6582	15026	15177							0.07729182879188556
VPVVPEPEV	9	Unmodified	_VPVVPEPEV_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.872802734375	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.885	1	61.959	61.459	62.459	0.073421								0	0	0	0.2428	1	13794	13794		10.824	3.5347	1				22756	5229	15027	15178	30822	30822					0.044475358374370444
VPWDDLDL	8	Unmodified	_VPWDDLDL_					0	0	0			REV__ENST00000453371.2_1_2:236954608-237032763:+|nuORF	REV__ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.73748779296875	2	486.737283	971.460012	-0.12778	-6.2194E-05	0.53898	0.00026234	0.4112	0.00020015	486.73745956100925	72.027	0.99815	72.027	71.584	72.582	0					61	34	2	0	0	0	0.53817	1	17150	17150		2.5775	0	1	190080	+		22757	9792	15028	15179	30823	30823					-0.026859140933765957
VPWHRLGGA	9	Unmodified	_VPWHRLGGA_					0	0	0		ENST00000473212.1_1_21:46927018-46932309:+|nuORF	ENST00000473212.1_1_21:46927018-46932309:+|nuORF	ENST00000473212.1_1_21:46927018-46932309:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7618408203125	2	496.774868	991.535184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.344	1	38.431	37.931	38.931	0.08688								0	0	0	0.27427	1	6668	6668		4.3292	1.0479	1				22758	6690	15029	15180	30824	30824					0.03907732948368903
VPWTELLSL	9	Unmodified	_VPWTELLSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.30029296875	2	529.30005	1056.58555	0.58079	0.00030741	-0.8205	-0.00043429	-0.23971	-0.00012688	529.2998904925149	97.564	0.58382	97.564	97.461	98.045	0					91	28	5	0	0	0	0.004452	2	24793	24793;24838		92.822	31.465	1	1069500			22759	1322	15030	15181	30825;30826	30825					0.05951797762872957
VPYEKGFAL	9	Unmodified	_VPYEKGFAL_					0	0	0		ENST00000548375.5_1_12:96405582-96408866:-|nuORF;nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H	ENST00000548375.5_1_12:96405582-96408866:-|nuORF	ENST00000548375.5_1_12:96405582-96408866:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2791748046875	2	512.279118	1022.54368	0.48772	0.00024985	-0.23893	-0.0001224	0.24879	0.00012745	512.278867353639	53.872	0.58542	53.872	53.632	54.218	0					42	20	3	0	0	0	0.15837	1	11488	11488		34.932	19.085	1	250390			22760	1691	15031	15182	30827	30827					0.03331242074330021
VPYEKGFAL	9	Unmodified	_VPYEKGFAL_					0	0	0		ENST00000548375.5_1_12:96405582-96408866:-|nuORF;nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H	ENST00000548375.5_1_12:96405582-96408866:-|nuORF	ENST00000548375.5_1_12:96405582-96408866:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2792358398438	2	512.279118	1022.54368	0.48259	0.00024722	-0.11405	-5.8427E-05	0.36853	0.00018879	512.2789294780908	53.831	0.59311	53.896	53.627	54.22	0.06543					39	24	3	0	0	0	0.10543	2	11334	11334;11389		31.268	11.829	1	173100			22761	1691	15031	15182	30828;30829	30828					0.03331242074330021
VPYRRFQN	8	Unmodified	_VPYRRFQN_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;CPNE1|p.R494W|1|0.32|ENSG00000214078|chr20:35626375-35626375|G/A|missense_variant;ENST00000473373.1_1_20:34214440-34214716:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2916870117188	2	540.290882	1078.56721	0.61333	0.00033138	-0.038518	-2.0811E-05	0.57481	0.00031057	540.2908747867241	97.552	0.28017	97.552	97.461	97.741	0					21	12	2	0	0	0	0.52924	1	24836	24836		8.5933	1.304	1	103450			22762	5563	15032	15183	30830	30830					0.031071006315187333
VPYRRFQN	8	Unmodified	_VPYRRFQN_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;CPNE1|p.R494W|1|0.32|ENSG00000214078|chr20:35626375-35626375|G/A|missense_variant;ENST00000473373.1_1_20:34214440-34214716:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	540.290882	1078.56721	0.70984	0.00038352	-0.20388	-0.00011016	0.50596	0.00027336	540.2911618567651	97.511	0.32011	97.552	97.417	97.737	0.040855	7.4763E-05	-0.00013666	NaN	8.5933	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84546			22763	5563	15032	15183							0.031071006315187333
VPYSVLEPVL	10	Unmodified	_VPYSVLEPVL_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7670288085938	2	558.320983	1114.62741	0.7309	0.00040807	-0.23145	-0.00012922	0.49945	0.00027885	558.3207725531133	82.211	0.5012	82.211	82.008	82.509	0					38	17	3	0	0	0	0.31456	1	20179	20179		14.838	2.3067	1	211360			22764	419	15033	15184	30831	30831					0.0746835345139516
VQAKIRKM	8	Unmodified	_VQAKIRKM_					0	0	0		ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2933654785156	2	487.302404	972.590256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.437	1	97.477	96.977	97.977	0.040855								0	0	0	0.38822	1	24613	24613		2.3027	0	1				22765	7031	15034	15185	30832	30832					0.10286403424640866
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3;PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.8161010742188	2	556.292756	1110.57096	0.45315	0.00025209	0.055608	3.0934E-05	0.50876	0.00028302	556.2926812695582	48.59	0.68508	48.67	48.248	48.933	0.080029					38	22	3	0	0	0	0.22247	1	9791	9791		20.415	6.5085	1	173100			22766	869	15035	15186	30833	30833					0.020097256146982545
VQASLITRQFN	11	Unmodified	_VQASLITRQFN_					0	0	0			REV__ENSG00000110060|ENST00000227474|PUS3	REV__ENSG00000110060|ENST00000227474|PUS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.8546142578125	2	638.854044	1275.69353	-0.20179	-0.00012892	0.47106	0.00030094	0.26926	0.00017202	638.8543232814342	31.68	0.56442	31.68	31.517	32.082	0					46	23	3	0	0	0	0.41693	1	4848	4848		0.30703	0.30703	1	87243	+		22767	8658	15036	15187	30834	30834					0.06671562346150495
VQDLHGPVL	9	Unmodified	_VQDLHGPVL_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.27447509765625	2	489.274367	976.53418	0.36882	0.00018046	0.39935	0.00019539	0.76818	0.00037585	489.2743691151134	53.828	0.46088	53.893	53.656	54.117	0.06543					24	18	2	0	0	0	0.2125	1	11335	11335		17.113	0	1	112940	+		22768	10120	15037	15188	30835	30835					0.044974737888196614
VQEEEEPKN	9	Unmodified	_VQEEEEPKN_					0	0	0			REV__ENST00000539659.5_1_12:14576849-14613468:+|nuORF	REV__ENST00000539659.5_1_12:14576849-14613468:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7598266601562	2	551.256568	1100.49858	0.69137	0.00038112	0.4358	0.00024024	1.1272	0.00062136	551.759339006193	93.092	0.31261	93.092	92.956	93.268	0					22	11	3	0	0	0	0.32375	1	23459	23459		3.5965	0.8613	1	67321	+		22769	10270	15038	15189	30836	30836					-0.04764653249526418
VQEEKSPIV	9	Unmodified	_VQEEKSPIV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2674560546875	2	514.784764	1027.55498	-0.48873	-0.00025159	0.37856	0.00019488	-0.11017	-5.6711E-05	515.2867810278997	41.57	0.26949	41.57	41.38	41.65	0					24	10	3	0	0	0	0.25376	1	7764	7764		6.2058	0.9089	1	35562			22770	3593	15039	15190	30837	30837					0.04230019377791905
VQELKVKTF	9	Unmodified	_VQELKVKTF_					0	0	0			REV__ENST00000496991.3_1_2:47273454-47277504:+|nuORF	REV__ENST00000496991.3_1_2:47273454-47277504:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7876586914062	2	546.326599	1090.63865	0.31195	0.00017043	0.074355	4.0622E-05	0.38631	0.00021105	546.3266082729763	56.683	0.34341	56.75	56.6	56.944	0.066452					18	11	2	0	0	0	0.24263	1	12252	12252		7.9102	0	1	126840	+		22771	8132	15040	15191	30838	30838					0.09695175545516577
VQEMDCME	8	Unmodified	_VQEMDCME_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B	REV__ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.26336669921875	2	492.677196	983.339839	0.22302	0.00010988	0.60407	0.00029761	0.82709	0.00040749	492.67739550166283	51.168	0.46686	51.168	50.981	51.448	0					21	15	2	0	0	0	0.3576	1	10659	10659		2.0598	0	1	82472	+		22772	11033	15041	15192	30839	30839					-0.1524972974530101
VQEMDCME	8	Unmodified	_VQEMDCME_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B	REV__ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2634582519531	2	492.677196	983.339839	0.3073	0.0001514	0.70204	0.00034588	1.0093	0.00049728	492.6774216797657	51.076	0.42642	51.146	50.978	51.405	0.069874					24	16	2	0	0	0	0.3576	1	10504	10504		2.0598	0	1	95048	+		22773	11033	15041	15192	30840	30840					-0.1524972974530101
VQEQLEEM	8	Unmodified	_VQEQLEEM_					0	0	0			REV__ENST00000587856.1_1_17:43311355-43318139:+|nuORF	REV__ENST00000587856.1_1_17:43311355-43318139:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.7739562988281	2	503.231507	1004.44846	0.076437	3.8466E-05	1.778	0.00089477	1.8545	0.00093323	503.23222245496845	49.126	0.15644	49.203	49.155	49.312	0.076607					5	4	2	0	0	0	0.3576	1	9907	9907		0.45834	0	1	22074	+		22774	10646	15042	15193	30841	30841					-0.05358479179017195
VQGSTKNRCKF	11	Unmodified	_VQGSTKNRCKF_					0	0	0			REV__nc|ENSG00000205111|Q5MAI5-2|CDKL4	REV__nc|ENSG00000205111|Q5MAI5-2|CDKL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	423.22564697265625	3	423.22404	1266.65029	0.048787	2.0648E-05	3.4851	0.001475	3.5339	0.0014956	423.2254624233591	60.384	0.27297	60.457	60.306	60.578	0.073421					19	8	3	0	0	0	0.35693	1	13351	13351		6.2344	0.71106	1	144770	+		22775	10967	15043	15194	30842	30842					0.027630492971638887
VQKKRKLK	8	Unmodified	_VQKKRKLK_					0	0	0			REV__ENSG00000113387|ENST00000265073|SUB1	REV__ENSG00000113387|ENST00000265073|SUB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.358642578125	2	514.358568	1026.70258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.76	1	115.77	115.27	116.27	0.013092								0	0	0	0.38822	1	29413	29413		0	0	1		+		22776	8742	15044	15195	30843	30843					0.19030000493103216
VQKKRKLK	8	Unmodified	_VQKKRKLK_					0	0	0			REV__ENSG00000113387|ENST00000265073|SUB1	REV__ENSG00000113387|ENST00000265073|SUB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.35791015625	2	514.358568	1026.70258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.88	1	117.89	117.39	118.39	0.013062								0	0	0	0.38822	1	29766	29766		0	0	1		+		22777	8742	15044	15195	30844	30844					0.19030000493103216
VQKMFYEL	8	Unmodified	_VQKMFYEL_					0	0	0			REV__PIK3CA|p.M1043V|2|0.23|ENSG00000121879|chr3:179234284-179234284|A/G|missense_variant	REV__PIK3CA|p.M1043V|2|0.23|ENSG00000121879|chr3:179234284-179234284|A/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7813720703125	2	529.272978	1056.5314	0.22479	0.00011898	-3.5077	-0.0018565	-3.2829	-0.0017375	529.2713907580593	95.384	0.51896	95.423	94.958	95.477	0.038872					32	21	2	0	0	0	0.35682	1	23881	23881		15.847	0	1	86695	+		22778	12958	15045	15196	30845	30845					0.005398823396262742
VQKMFYEL	8	Unmodified	_VQKMFYEL_					0	0	0			REV__PIK3CA|p.M1043V|2|0.23|ENSG00000121879|chr3:179234284-179234284|A/G|missense_variant	REV__PIK3CA|p.M1043V|2|0.23|ENSG00000121879|chr3:179234284-179234284|A/G|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	529.272978	1056.5314	0.26508	0.0001403	-3.2967	-0.0017449	-3.0316	-0.0016046	529.2713414276662	95.387	0.4675	95.387	95.074	95.541	0	-0.018321	6.5415E-05	NaN	15.847	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147860	+		22779	12958	15045	15196							0.005398823396262742
VQLEGQLCLF	10	Unmodified	_VQLEGQLCLF_					0	0	0			REV__ENST00000374389.8_1_1:24981584-24987212:+|nuORF	REV__ENST00000374389.8_1_1:24981584-24987212:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.819580078125	2	575.302267	1148.58998	0.51715	0.00029752	-2.2088	-0.0012707	-1.6917	-0.00097321	575.3012031722917	70.011	0.40044	70.011	69.818	70.219	0					27	13	3	0	0	0	0.30541	1	16424	16424		19.257	4.4187	1	187590	+		22780	11626	15046	15197	30846	30846					0.021629389140798594
VQLQYSLNNGK	11	Unmodified	_VQLQYSLNNGK_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.3401489257812	2	632.338227	1262.6619	0.43294	0.00027376	1.9218	0.0012152	2.3548	0.001489	632.8407086401925	85.299	0.31329	85.299	85.189	85.503	0					21	12	3	0	0	0	0.36299	1	21112	21112		10.8	1.4164	1	124300			22781	5189	15047	15198	30847	30847					0.04107569592156324
VQNEINNMSF	10	Unmodified	_VQNEINNMSF_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	ENSG00000198626|ENST00000366574|RYR2;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2744140625	2	598.274238	1194.53392	0.24617	0.00014728	-0.73532	-0.00043992	-0.48915	-0.00029265	598.2739276114269	38.075	1.5929	38.159	37.744	39.337	0.084476					123	59	3	0	0	0	0.45945	1	6730	6730		2.9952	0	1	95082			22782	5384;5212	15048	15199	30848	30848					-0.05556313993361073
VQNGKQEAL	9	Unmodified	_VQNGKQEAL_					0	0	0			REV__ENST00000343823.10_2_8:37986318-37986411:+|nuORF	REV__ENST00000343823.10_2_8:37986318-37986411:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7662658691406	2	493.766906	985.519259	-0.49746	-0.00024563	-0.61502	-0.00030368	-1.1125	-0.00054931	493.76652144774204	41.766	0.45566	41.766	41.575	42.03	0					30	16	3	0	0	0	0.12809	1	7823	7823		26.884	0	1	114480	+		22783	11477	15049	15200	30849	30849					0.025919819208070294
VQNGKQEAL	9	Unmodified	_VQNGKQEAL_					0	0	0			REV__ENST00000343823.10_2_8:37986318-37986411:+|nuORF	REV__ENST00000343823.10_2_8:37986318-37986411:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.766906	985.519259	-0.49746	-0.00024563	-0.61502	-0.00030368	-1.1125	-0.00054931	493.76652144774204	41.766	0.45566	41.766	41.575	42.03	0	-0.011156	-8.7849E-05	NaN	26.884	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114480	+		22784	11477	15049	15200							0.025919819208070294
VQNGVHIF	8	Unmodified	_VQNGVHIF_					0	0	0			REV__nc|ENSG00000128654|O75431-2|MTX2	REV__nc|ENSG00000128654|O75431-2|MTX2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.24798583984375	2	457.248152	912.481751	-0.15548	-7.1095E-05	0.047961	2.193E-05	-0.10752	-4.9165E-05	457.2481266590744	32.101	1.1897	32.175	31.979	33.169	0.073784					115	57	3	0	0	0	0.53858	1	4861	4861		2.3027	0	1	427820	+		22785	9021	15050	15201	30850	30850					0.02200935445853247
VQNNVLLIF	9	Unmodified	_VQNNVLLIF_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;ITGB6-RBMS1|1|fusion	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.313232421875	2	530.313492	1058.61243	0.46442	0.00024629	-1.121	-0.00059447	-0.65655	-0.00034818	530.313366173463	87.733	0.3842	87.733	87.498	87.883	0					24	13	3	0	0	0	0.1182	1	21807	21807		28.487	3.0875	1	110320			22786	1886	15051	15202	30851	30851					0.08546906374044738
VQNNVLLIF	9	Unmodified	_VQNNVLLIF_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;ITGB6-RBMS1|1|fusion	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.3138427734375	2	530.313492	1058.61243	0.31723	0.00016823	-1.8985	-0.0010068	-1.5813	-0.00083858	530.3132761654406	87.699	0.38293	87.729	87.582	87.965	0.030037					20	13	2	0	0	0	0.1182	1	21639	21639		28.487	3.0875	1	95387			22787	1886	15051	15202	30852	30852					0.08546906374044738
VQNSIPCVEI	10	Unmodified	_VQNSIPCVEI_					0	0	0			REV__nc|ENSG00000093072|Q9NZK5-2|ADA2	REV__nc|ENSG00000093072|Q9NZK5-2|ADA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2649536132812	2	551.284074	1100.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.261	1	56.261	55.761	56.761	0								0	0	0	0.30402	1	12222	12222		17.113	6.289	1		+		22788	8332	15052	15203	30853	30853					0.007340620173863499
VQNYVLTLMN	10	Unmodified	_VQNYVLTLMN_					0	0	0		nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8132934570312	2	597.812999	1193.61144	0.13276	7.9366E-05	0.14288	8.5415E-05	0.27564	0.00016478	597.8131245506268	35.887	4.0088	35.887	35.228	39.237	0					418	149	5	0	0	0	0.45794	3	6680	6680;6870;6947		3.2813	0	1	905780			22789	2905	15053	15204	30854;30855;30856	30854					0.022383239428108936
VQPGGGGG	8	Unmodified	_VQPGGGGG_					0	0	0			REV__ENSG00000120709|ENST00000239906|FAM53C	REV__ENSG00000120709|ENST00000239906|FAM53C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.2689819335938	1	628.304915	627.297639	0.3289	0.00020665	0.67871	0.00042644	1.0076	0.00063308	628.3005067040942	88.011	0.29079	88.041	87.906	88.196	0.030037					11	9	2	0	0	0	0.3576	1	21758	21758		0	0	1	25698	+		22790	8882	15054	15205	30857	30857					-0.03091832984841858
VQPHDLGEV	9	Unmodified	_VQPHDLGEV_					0	0	0		ENST00000447985.1_1_21:30260216-30260456:-|nuORF	ENST00000447985.1_1_21:30260216-30260456:-|nuORF	ENST00000447985.1_1_21:30260216-30260456:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2532958984375	2	497.253631	992.49271	-0.25779	-0.00012818	-0.054863	-2.7281E-05	-0.31265	-0.00015547	497.25357086901766	41.975	0.53787	42.064	41.893	42.431	0.089767					44	20	3	0	0	0	0.18364	1	7788	7788		20.454	2.3186	1	194070			22791	6554	15055	15206	30858	30858					-0.0038370697051277602
VQPHDLGEV	9	Unmodified	_VQPHDLGEV_					0	0	0		ENST00000447985.1_1_21:30260216-30260456:-|nuORF	ENST00000447985.1_1_21:30260216-30260456:-|nuORF	ENST00000447985.1_1_21:30260216-30260456:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2536315917969	2	497.253631	992.49271	-0.028369	-1.4106E-05	0.22431	0.00011154	0.19594	9.743E-05	497.2537214071426	42.954	0.72606	43.044	42.781	43.507	0.089767					66	26	4	0	0	0	0.26684	1	8083	8083		10.824	0	1	372500			22792	6554	15055	15206	30859	30859					-0.0038370697051277602
VQPKQDAFANF	11	Unmodified	_VQPKQDAFANF_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.8189086914062	2	632.81967	1263.62479	0.096535	6.1089E-05	-0.53726	-0.00033999	-0.44073	-0.0002789	632.8190203257109	49.153	0.30347	49.229	49.056	49.359	0.076607					18	10	2	0	0	0	0.39356	1	9921	9921		5.7834	2.7882	1	90409			22793	1792	15056	15207	30860	30860					0.003518980464150445
VQPKQDAFANF	11	Unmodified	_VQPKQDAFANF_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	632.81967	1263.62479	0.055382	3.5047E-05	0.4247	0.00026876	0.48008	0.00030381	632.8201213133967	49.222	0.39165	49.222	49.088	49.48	0	-0.0034471	0.00045144	NaN	5.7834	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83378			22794	1792	15056	15207							0.003518980464150445
VQPPHLFLW	9	Unmodified	_VQPPHLFLW_					0	0	0		ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.816650390625	2	568.816202	1135.61785	0.28953	0.00016469	0.57262	0.00032571	0.86215	0.0004904	568.8166526377523	76.72	0.61862	76.72	76.415	77.034	0					54	21	4	0	0	0	0.083504	2	18440	18440;18486		36.044	19.102	1	575890			22795	4572	15057	15208	30861;30862	30861					0.055466299565068766
VQPPHLFLW	9	Unmodified	_VQPPHLFLW_					0	0	0		ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8170166015625	2	568.816202	1135.61785	0.34046	0.00019366	0.46077	0.00026209	0.80123	0.00045575	568.8165689158345	76.652	0.60846	76.692	76.387	76.996	0.03923					54	21	3	0	0	0	0.045114	2	18279	18279;18336		44.407	26.261	1	490530			22796	4572	15057	15208	30863;30864	30863					0.055466299565068766
VQPQQNSQL	9	Unmodified	_VQPQQNSQL_					0	0	0		ENST00000412374.2_1_5:28927195-28927363:+|nuORF;nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	ENST00000412374.2_1_5:28927195-28927363:+|nuORF	ENST00000412374.2_1_5:28927195-28927363:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7818603515625	2	521.269813	1040.52507	-0.053134	-2.7697E-05	3.079	0.001605	3.0259	0.0015773	521.2712135628308	45.941	0.86364	45.941	45.556	46.42	0					52	29	4	0	0	0	0.25644	1	8988	8988		3.9444	0	1	115320			22797	1922	15058	15209	30865	30865					0.006430804324736528
VQPRNWLLF	9	Unmodified	_VQPRNWLLF_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8325805664062	2	586.832383	1171.65021	0.22151	0.00012999	0.15371	9.0203E-05	0.37523	0.0002202	586.8324876310337	72.837	1.5022	72.837	72.528	74.03	0					159	53	5	0	0	0	0.0043613	5	17257	17210;17257;17309;17352;17614		96.285	51.878	1	7510400			22798	646	15059	15210	30866;30867;30868;30869;30870	30867					0.07125417359520725
VQPRNWLLF	9	Unmodified	_VQPRNWLLF_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.8326416015625	2	586.832383	1171.65021	0.48268	0.00028325	-0.12295	-7.2152E-05	0.35973	0.0002111	586.8323337756738	72.715	1.4559	72.771	72.514	73.97	0.055931					154	53	5	0	0	0	0.0053304	4	17106	17055;17106;17149;17195		81.613	30.758	1	6833000			22799	646	15059	15210	30871;30872;30873;30874	30872					0.07125417359520725
VQPRNWLLFA	10	Unmodified	_VQPRNWLLFA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.2948608398438	2	622.35094	1242.68733	-0.35629	-0.00022174	0.33961	0.00021136	-0.016674	-1.0377E-05	622.351129989041	72.36	0.95537	72.36	72.071	73.027	0					97	32	4	0	0	0	0.23678	1	17127	17127		43.858	28.61	1	1324500			22800	646	15060	15211	30875	30875					0.07569088905279386
VQPRNWLLFA	10	Unmodified	_VQPRNWLLFA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.294921875	2	622.35094	1242.68733	-0.04795	-2.9841E-05	-0.046713	-2.9072E-05	-0.094662	-5.8913E-05	622.3509077147102	72.31	0.86839	72.366	72.06	72.928	0.055939					89	29	5	0	0	0	0.23678	1	16923	16923		43.858	17.59	1	1594000			22801	646	15060	15211	30876	30876					0.07569088905279386
VQPSLFYHL	9	Unmodified	_VQPSLFYHL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2978515625	2	552.297842	1102.58113	0.6705	0.00037031	-0.16798	-9.2777E-05	0.50251	0.00027754	552.2976754147812	64.65	1.1158	64.65	64.356	65.472	0					101	40	5	0	0	0	0.03918	2	14754	14754;14807		45.7	24.163	1	1617300			22802	3120	15061	15212	30877;30878	30877					0.03394333339952027
VQPSLFYHL	9	Unmodified	_VQPSLFYHL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2982177734375	2	552.297842	1102.58113	0.61599	0.00034021	-0.0034537	-1.9075E-06	0.61254	0.0003383	552.2977784641192	64.55	1.0786	64.619	64.374	65.452	0.068909					102	40	4	0	0	0	0.03918	2	14585	14585;14631		45.7	24.163	1	1326600			22803	3120	15061	15212	30879;30880	30879					0.03394333339952027
VQPSLLHCGQL	11	Unmodified	_VQPSLLHCGQL_					0	0	0			REV__ENST00000368474.8_1_1:154555057-154555423:-|nuORF	REV__ENST00000368474.8_1_1:154555057-154555423:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3049926757812	2	597.818615	1193.62268	0.43891	0.00026239	0.3112	0.00018604	0.7501	0.00044843	597.8187252650248	65.994	0.65663	66.061	65.847	66.504	0.066872					45	24	3	0	0	0	0.35693	1	15103	15103		11.495	0.67078	1	299680	+		22804	11575	15062	15213	30881	30881					0.03361146036991158
VQPSSFQNI	9	Unmodified	_VQPSSFQNI_					0	0	0		ENSG00000104140|ENST00000220507|RHOV;chr15:40873436-40873684|119|13.16|0.29|5.49|-|1|None,RHOV|1	ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.26141357421875	2	510.261456	1018.50836	0.17744	9.0541E-05	-0.07735	-3.9469E-05	0.10009	5.1072E-05	510.26133024922206	53.019	0.44095	53.019	52.813	53.254	0					34	16	3	0	0	0	0.078774	1	11211	11211		37.075	15.538	1	177540			22805	1399	15063	15214	30882	30882					-0.00015420453462411388
VQPSSFQNI	9	Unmodified	_VQPSSFQNI_					0	0	0		ENSG00000104140|ENST00000220507|RHOV;chr15:40873436-40873684|119|13.16|0.29|5.49|-|1|None,RHOV|1	ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.763427734375	2	510.261456	1018.50836	0.34863	0.00017789	-0.4101	-0.00020926	-0.061472	-3.1367E-05	510.26113208748626	52.962	0.37097	53.028	52.851	53.222	0.06543					42	16	3	0	0	0	0.14539	1	11110	11110		24.882	13.387	1	142720			22806	1399	15063	15214	30883	30883					-0.00015420453462411388
VQPTQDVIS	9	Unmodified	_VQPTQDVIS_					0	0	0		ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7614440917969	2	493.761289	985.508025	0.66902	0.00033034	-0.4688	-0.00023148	0.20022	9.886E-05	493.7611128993312	54.932	0.86229	54.932	54.635	55.497	0					96	31	5	0	0	0	0.010235	1	11829	11829		66.457	0	1	3799700			22807	7228	15064	15215	30884	30884					0.014691598266608707
VQPTQDVIS	9	Unmodified	_VQPTQDVIS_					0	0	0		ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	493.761289	985.508025	0.67014	0.00033089	-0.48714	-0.00024053	0.183	9.036E-05	493.7610961810315	54.873	0.90273	54.938	54.672	55.574	0.065128	0.0027549	-6.6859E-06	NaN	66.457	91	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2785900			22808	7228	15064	15215							0.014691598266608707
VQQRYYEPS	9	Unmodified	_VQQRYYEPS_					0	0	0			REV__nc|ENSG00000107164|Q96I24-2|FUBP3	REV__nc|ENSG00000107164|Q96I24-2|FUBP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2830810546875	2	585.28292	1168.55129	-0.12723	-7.4464E-05	0.20813	0.00012182	0.080905	4.7352E-05	585.2830108567069	18.987	0.16443	18.987	18.885	19.05	0					28	19	2	0	0	0	0.34704	1	1255	1255		0.52476	0	1	22752	+		22809	12772	15065	15216	30885	30885					-0.026246503960464906
VQQTIHWLF	9	Unmodified	_VQQTIHWLF_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.7188720703125	2	586.316566	1170.61858	0.65149	0.00038198	0.56578	0.00033173	1.2173	0.0007137	586.3162599402998	71.531	0.46954	71.59	71.346	71.815	0.058578					43	16	3	0	0	0	0.11174	1	16687	16687		43.772	17.504	1	646150			22810	1722	15066	15217	30886	30886					0.04009424605555978
VQRERYWH	8	Unmodified	_VQRERYWH_					0	0	0			REV__ENSG00000139547|ENST00000398138|RDH16	REV__ENSG00000139547|ENST00000398138|RDH16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.3372192382812	2	587.299239	1172.58392	0.63715	0.0003742	1.3909	0.00081686	2.028	0.0011911	587.8014486725253	57.421	0.35648	57.421	57.241	57.597	0					24	12	3	0	0	0	0.3576	1	12530	12530		8.5933	0.98433	1	102600	+		22811	9347	15067	15218	30887	30887					0.00453601517460811
VQRLKKKL	8	Unmodified	_VQRLKKKL_					0	0	0			REV__nc|ENSG00000170473|Q9BRP8-2|PYM1	REV__nc|ENSG00000170473|Q9BRP8-2|PYM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.8533935546875	2	506.853119	1011.69168	-0.1242	-6.2951E-05	-0.24682	-0.0001251	-0.37102	-0.00018805	506.85301309966127	113.2	0.41845	113.2	113.15	113.57	0					102	61	2	0	0	0	0.54097	1	29018	29018		0.69038	0	1	145980	+		22812	10216	15068	15219	30888	30888					0.18630598118829766
VQRRITCLH	9	Unmodified	_VQRRITCLH_					0	0	0		ENST00000256689.9_1_12:46753588-46753702:-|nuORF	ENST00000256689.9_1_12:46753588-46753702:-|nuORF	ENST00000256689.9_1_12:46753588-46753702:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.31884765625	2	563.319117	1124.62368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.839	1	14.839	14.339	15.339	0								0	0	0	0.29525	1	444	444		0	0	1				22813	5850	15069	15220	30889	30889					0.06635405196493593
VQRSRTRLLC	10	Unmodified	_VQRSRTRLLC_					0	0	0		ENST00000225777.7_1_17:76168333-76168627:+|nuORF	ENST00000225777.7_1_17:76168333-76168627:+|nuORF	ENST00000225777.7_1_17:76168333-76168627:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.5437316894531	3	411.239913	1230.69791	-0.2399	-9.8658E-05	-1.0849	-0.00044616	-1.3248	-0.00054482	411.2395061724531	32.588	0.31773	32.662	32.544	32.862	0.07378					25	17	2	0	0	0	0.31853	1	4987	4987		0.62683	0	1	20437			22814	5804	15070	15221	30890	30890					0.09178748288059069
VQRSRTRLLC	10	Unmodified	_VQRSRTRLLC_					0	0	0		ENST00000225777.7_1_17:76168333-76168627:+|nuORF	ENST00000225777.7_1_17:76168333-76168627:+|nuORF	ENST00000225777.7_1_17:76168333-76168627:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	411.239913	1230.69791	0.089556	3.6829E-05	-1.07	-0.00044003	-0.98044	-0.0004032	411.2395549273943	32.693	0.33013	32.693	32.526	32.856	0	0.015841	8.7033E-06	NaN	0.62683	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31121			22815	5804	15070	15221							0.09178748288059069
VQSFTNVRIM	10	Unmodified	_VQSFTNVRIM_					0	0	0			REV__ENST00000447923.5_1_7:94146874-94146946:+|nuORF	REV__ENST00000447923.5_1_7:94146874-94146946:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.3072509765625	2	597.818615	1193.62268	0.43891	0.00026239	0.3112	0.00018604	0.7501	0.00044843	597.8187252650248	65.994	0.65663	66.061	65.847	66.504	0.066872					45	24	3	0	0	0	0.40359	1	15129	15129		11.495	1.4208	1	299680	+		22816	11912	15071	15222	30891	30891					0.033611460369456836
VQSLLRPR	8	Unmodified	_VQSLLRPR_					0	0	0			REV__ENSG00000114491|ENST00000232607|UMPS	REV__ENSG00000114491|ENST00000232607|UMPS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.8031005859375	2	484.803626	967.592698	-0.078108	-3.7867E-05	-0.02479	-1.2018E-05	-0.1029	-4.9885E-05	484.8035883771146	36.443	0.40502	36.443	36.231	36.636	0					23	15	2	0	0	0	0.53894	1	6247	6247		2.0598	0	1	17588	+		22817	8764	15072	15223	30892	30892					0.10760575153938134
VQSLLRPR	8	Unmodified	_VQSLLRPR_					0	0	0			REV__ENSG00000114491|ENST00000232607|UMPS	REV__ENSG00000114491|ENST00000232607|UMPS	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	484.803626	967.592698	-0.078108	-3.7867E-05	-0.02479	-1.2018E-05	-0.1029	-4.9885E-05	484.8035883771146	36.443	0.40502	36.443	36.231	36.636	0	-0.0088085	-4.6968E-05	NaN	2.0598	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17588	+		22818	8764	15072	15223							0.10760575153938134
VQSLLRPR	8	Unmodified	_VQSLLRPR_					0	0	0			REV__ENSG00000114491|ENST00000232607|UMPS	REV__ENSG00000114491|ENST00000232607|UMPS	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	484.803626	967.592698	-0.049349	-2.3925E-05	0.097662	4.7347E-05	0.048313	2.3422E-05	484.8035505197065	36.379	0.39894	36.461	36.235	36.634	0.081715	0.0088085	7.1763E-05	NaN	2.0598	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20285	+		22819	8764	15072	15223							0.10760575153938134
VQSSLAITSN	10	Unmodified	_VQSSLAITSN_					0	0	0		AluJr4_dup4313|chr3:128811130-128811275:-|1.2274320759575994|0.0007489705087858|10.68|520.0|11|3|anti-sense	AluJr4_dup4313|chr3:128811130-128811275:-|1.2274320759575994|0.0007489705087858|10.68|520.0|11|3|anti-sense	AluJr4_dup4313|chr3:128811130-128811275:-|1.2274320759575994|0.0007489705087858|10.68|520.0|11|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.27215576171875	2	510.272021	1018.52949	-0.40693	-0.00020764	-0.051065	-2.6057E-05	-0.45799	-0.0002337	510.272013723791	16.583	0.2662	16.583	16.437	16.703	0					50	33	2	0	0	0	0.4753	1	747	747		0	0	1	16154			22820	26	15073	15224	30893	30893					0.020965448553511123
VQSSLAITSN	10	Unmodified	_VQSSLAITSN_					0	0	0		AluJr4_dup4313|chr3:128811130-128811275:-|1.2274320759575994|0.0007489705087858|10.68|520.0|11|3|anti-sense	AluJr4_dup4313|chr3:128811130-128811275:-|1.2274320759575994|0.0007489705087858|10.68|520.0|11|3|anti-sense	AluJr4_dup4313|chr3:128811130-128811275:-|1.2274320759575994|0.0007489705087858|10.68|520.0|11|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2718811035156	2	510.272021	1018.52949	0.20385	0.00010402	-0.56485	-0.00028823	-0.361	-0.00018421	510.27173186285046	16.553	0.15342	16.631	16.582	16.735	0.077806					27	19	2	0	0	0	0.4753	1	683	683		0	0	1	16979			22821	26	15073	15224	30894	30894					0.020965448553511123
VQSTQQEH	8	Unmodified	_VQSTQQEH_					0	0	0		ENST00000423517.6_1_7:82450377-82450656:-|nuORF	ENST00000423517.6_1_7:82450377-82450656:-|nuORF	ENST00000423517.6_1_7:82450377-82450656:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.72454833984375	2	478.725238	955.435923	-0.57303	-0.00027433	0.0061692	2.9534E-06	-0.56686	-0.00027137	478.72518664574017	20.236	0.61845	20.236	20.059	20.678	0					147	62	4	0	0	0	0.53926	1	1527	1527		1.8442	0	1	194960			22822	6459	15074	15225	30895	30895					-0.043577545270409246
VQTGDVYLAM	10	Unmodified	_VQTGDVYLAM_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2984619140625	2	548.7708	1095.52705	0.40384	0.00022162	-1.0292	-0.00056479	-0.62536	-0.00034318	549.2709088126202	88.833	0.68266	88.833	88.46	89.143	0					62	28	3	0	0	0	0.31731	1	22216	22216		6.2058	0.97511	1	217290	+		22823	8806	15075	15226	30896	30896					-0.01689626873940142
VQVAGKAER	9	Unmodified	_VQVAGKAER_					0	0	0		ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2774963378906	2	479.277441	956.540328	0.16345	7.8337E-05	0.11031	5.2868E-05	0.27376	0.00013121	479.27738708472776	78.766	3.0918	78.766	77.899	80.99	0					356	107	4	0	0	0	0.27332	4	19007	19007;19050;19141;19186		10.074	10.074	1	1643400			22824	562	15076	15227	30897;30898;30899;30900	30897					0.06031992020314192
VQVAGKAER	9	Unmodified	_VQVAGKAER_					0	0	0		ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.2774353027344	2	479.277441	956.540328	0.098532	4.7224E-05	0.19499	9.3454E-05	0.29352	0.00014068	479.27740589104303	78.777	3.1544	78.807	77.792	80.946	0.030159					352	111	4	0	0	0	0.30397	5	18790	18790;18940;18983;19024;19217		6.2058	6.2058	1	1861400			22825	562	15076	15227	30901;30902;30903;30904;30905	30901					0.06031992020314192
VQVFVDSLL	9	Unmodified	_VQVFVDSLL_					0	0	0			REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8040466308594	2	510.292225	1018.5699	0.61414	0.00031339	0.33337	0.00017012	0.94751	0.00048351	510.292423634172	80.848	0.93236	80.872	80.353	81.285	0.023613					65	32	3	0	0	0	0.23598	1	19612	19612		10.824	0	1	278710	+		22826	12279	15077	15228	30906	30906					0.061355112458159056
VQVGAGPSALF	11	Unmodified	_VQVGAGPSALF_					0	0	0		ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.287841796875	2	523.287474	1044.5604	0.21736	0.00011374	0.43304	0.0002266	0.6504	0.00034034	523.2875971921949	56.437	0.75722	56.437	56.19	56.948	0					72	27	4	0	0	0	0.36931	1	12348	12348		10.074	1.4806	1	981610			22827	3803	15078	15229	30907	30907					0.03989742960266085
VQVLLLLLRI	10	Unmodified	_VQVLLLLLRI_					0	0	0		ENST00000332674.9_2_10:112045956-112046085:+|nuORF	ENST00000332674.9_2_10:112045956-112046085:+|nuORF	ENST00000332674.9_2_10:112045956-112046085:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.4132080078125	2	590.413009	1178.81146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.88	1	107.9	107.4	108.4	0.022224								0	0	0	0.33984	1	27624	27624		0.40072	0.050084	1				22828	6062	15079	15230	30908	30908					0.2292116667274513
VQVVADVL	8	Unmodified	_VQVVADVL_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.7516174316406	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.298	1	73.298	72.798	73.798	0								0	0	0	0.38822	1	17412	17412		5.7604	0	1				22829	5406	15080	15231	30909	30909					0.06383284011508294
VQVVVWIT	8	Unmodified	_VQVVVWIT_					0	0	0			REV__FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	REV__FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2835388183594	2	472.284203	942.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.031	1	96.031	95.531	96.531	0								0	0	0	0.38822	1	24339	24339		2.3027	0	1		+		22830	10034	15081	15232	30910	30910					0.08027849799555042
VQYENPWF	8	Unmodified	_VQYENPWF_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2514038085938	2	541.750724	1081.4869	0.02413	1.3072E-05	-0.36244	-0.00019635	-0.33831	-0.00018328	542.2521352319268	31.168	0.29188	31.242	31.129	31.421	0.073782					19	14	2	0	0	0	0.53894	1	4541	4541		2.0598	0.21551	1	16208	+		22831	8079	15082	15233	30911	30911					-0.050588054821901096
VQYENPWF	8	Unmodified	_VQYENPWF_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.317138671875	2	541.750724	1081.4869	0.02413	1.3072E-05	-0.36244	-0.00019635	-0.33831	-0.00018328	542.2521352319268	31.168	0.29188	31.242	31.129	31.421	0.073782					19	14	2	0	0	0	0.3576	1	4525	4525		2.0598	0	1	16208	+		22832	8079	15082	15233	30912	30912					-0.050588054821901096
VRAETLEYL	9	Unmodified	_VRAETLEYL_					0	0	0		tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1	tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1	tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2975463867188	2	547.298039	1092.58152	0.07126	3.9E-05	0.00097446	5.3332E-07	0.072234	3.9534E-05	547.2980136111821	22.783	0.29609	22.885	22.756	23.052	0.10178					43	27	2	0	0	0	0.34754	1	2139	2139		0.45834	0	1	33332			22833	13532	15083	15234	30913	30913					0.0389370826915183
VRARPRLGYY	10	Unmodified	_VRARPRLGYY_					0	0	0			REV__ENST00000245222.8_1_19:49123680-49123749:+|nuORF	REV__ENST00000245222.8_1_19:49123680-49123749:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.811767578125	2	625.859464	1249.70437	0.26029	0.0001629	-0.62849	-0.00039335	-0.3682	-0.00023044	625.8596758528413	57.884	0.16039	57.952	57.919	58.08	0.068375					6	5	2	0	0	0	0.31771	1	12595	12595		4.3292	0	1	54827	+		22834	11202	15084	15235	30914	30914					0.0895100951108816
VRASNGYS	8	Unmodified	_VRASNGYS_					0	0	0			REV__ENSG00000040731|ENST00000264463|CDH10	REV__ENSG00000040731|ENST00000264463|CDH10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	427.2248840332031	2	427.211766	852.40898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.739	1	99.782	99.282	100.28	0.042839								0	0	0	0.38822	1	25309	25309		2.0598	0	1		+		22835	8029	15085	15236	30915	30915					-0.023128183475705555
VRDLKVLACPF	11	Unmodified	_VRDLKVLACPF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.8606567382812	2	630.860283	1259.70601	0.13976	8.8169E-05	0.72202	0.00045549	0.86178	0.00054366	630.860460552371	90.006	1.7085	90.04	89.035	90.744	0.034065					96	67	2	0	0	0	0.40796	1	22144	22144		2.4985	0.84587	1	695210			22836	2415	15086	15237	30916	30916					0.08654882484802329
VREASSPPLSS	11	Unmodified	_VREASSPPLSS_					0	0	0		ENST00000555567.5_1_14:75421952-75422225:-|nuORF	ENST00000555567.5_1_14:75421952-75422225:-|nuORF	ENST00000555567.5_1_14:75421952-75422225:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2962646484375	2	565.296027	1128.5775	-0.12846	-7.2618E-05	1.2569	0.00071052	1.1284	0.0006379	565.2962806221561	29.42	0.40351	29.498	29.329	29.733	0.078287					30	22	2	0	0	0	0.40693	1	4018	4018		2.7352	0	1	22063			22837	7124	15087	15238	30917	30917					0.01835618775430703
VREASSPPLSS	11	Unmodified	_VREASSPPLSS_					0	0	0		ENST00000555567.5_1_14:75421952-75422225:-|nuORF	ENST00000555567.5_1_14:75421952-75422225:-|nuORF	ENST00000555567.5_1_14:75421952-75422225:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	565.296027	1128.5775	-0.18129	-0.00010248	0.5654	0.00031962	0.38411	0.00021713	565.2960750697441	29.487	0.36447	29.487	29.252	29.616	0	-0.0056803	-0.00040101	NaN	2.7352	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28364			22838	7124	15087	15238							0.01835618775430703
VRELEGEVEN	10	Unmodified	_VRELEGEVEN_					0	0	0		ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.291015625	2	587.290942	1172.56733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.905	1	28.905	28.405	29.405	0								0	0	0	0.34018	1	3976	3976		0	0	1				22839	2610	15088	15239	30918	30918					-0.012049889497802724
VRGQLLQRR	9	Unmodified	_VRGQLLQRR_					0	0	0			REV__ENST00000498500.1_1_1:155165634-155166210:-|nuORF	REV__ENST00000498500.1_1_1:155165634-155166210:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3529052734375	2	563.351806	1124.68906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.288	1	19.383	18.883	19.883	0.095232								0	0	0	0.2927	1	1241	1241		0.52476	0	1		+		22840	10166	15089	15240	30919	30919					0.13170142713875066
VRHLKLGEEP	10	Unmodified	_VRHLKLGEEP_					0	0	0			REV__nc|ENSG00000124508|Q8WVV5-5|BTN2A2	REV__nc|ENSG00000124508|Q8WVV5-5|BTN2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.338134765625	2	589.33803	1176.66151	0.14437	8.508E-05	0.11325	6.6741E-05	0.25761	0.00015182	589.3380142033578	25.488	0.48188	25.583	25.411	25.892	0.094852					92	40	3	0	0	0	0.46656	1	2911	2911		1.6526	0	1	131720	+		22841	8957	15090	15241	30920	30920					0.08024194662993978
VRHRKQMH	8	Unmodified	_VRHRKQMH_					0	0	0			REV__ENST00000580785.1_1_18:66365045-66365237:-|nuORF	REV__ENST00000580785.1_1_18:66365045-66365237:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.3040771484375	2	546.303801	1090.59305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.969	1	25.065	24.565	25.565	0.096073								0	0	0	0.38822	1	2712	2712		0	0	1		+		22842	10082	15091	15242	30921	30921					0.05137671602165028
VRHVLPLV	8	Unmodified	_VRHVLPLV_					0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.22625732421875	2	466.805637	931.596721	-0.32943	-0.00015378	1.2148	0.00056709	0.88539	0.00041331	466.8060235796641	28.529	0.27324	28.611	28.453	28.726	0.082132					23	14	2	0	0	0	0.3576	1	3736	3736		0	0	1	15201	+		22843	9643	15092	15243	30922	30922					0.1281866464767063
VRIKKGLLAPL	11	Unmodified	_VRIKKGLLAPL_					0	0	0		ENST00000487195.5_1_13:46917522-46924493:-|nuORF;ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL	ENST00000487195.5_1_13:46917522-46924493:-|nuORF	ENST00000487195.5_1_13:46917522-46924493:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7683715820312	2	604.416083	1206.81761	0.72581	0.00043869	1.2641	0.00076407	1.9899	0.0012028	604.4180063151288	64.425	0.15884	64.494	64.428	64.587	0.068916					7	5	2	0	0	0	0.31102	1	14566	14566		0	0	1	84940			22844	1315	15093	15244	30923	30923					0.22247684904277776
VRISIIEDML	10	Unmodified	_VRISIIEDML_					0	0	0			REV__MYOF|p.T380Nfs*8|1|0.2|ENSG00000138119|chr10:93399466-93399476|CCTTTACTGTC/-|frameshift_variant	REV__MYOF|p.T380Nfs*8|1|0.2|ENSG00000138119|chr10:93399466-93399476|CCTTTACTGTC/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.30908203125	2	594.836474	1187.65839	-0.0548	-3.2597E-05	2.5851	0.0015377	2.5303	0.0015051	594.8380984698563	72.75	0.73781	72.75	72.436	73.174	0					34	15	3	0	0	0	0.31783	1	17161	17161		1.6526	0	1	415220	+		22845	9305	15094	15245	30924	30924					0.07207183493983393
VRIVPLKI	8	Unmodified	_VRIVPLKI_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32861328125	2	469.331488	936.648422	-0.39277	-0.00018434	-3.5185	-0.0016513	-3.9112	-0.0018357	469.32856631231533	22.125	0.88482	22.125	21.891	22.776	0					122	75	3	0	0	0	0.54199	3	2045	2045;2097;2169		0	0	1	24660	+		22846	12152	15095	15246	30925;30926;30927	30925					0.17756408341540464
VRIVPLKI	8	Unmodified	_VRIVPLKI_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.3286437988281	2	469.331488	936.648422	-0.33783	-0.00015855	-4.1249	-0.0019359	-4.4627	-0.0020945	469.328614664264	24.837	0.68615	24.837	24.369	25.055	0					83	50	3	0	0	0	0.54199	2	2781	2781;2821		0	0	1	35593	+		22847	12152	15095	15246	30928;30929	30928					0.17756408341540464
VRIVPLKI	8	Unmodified	_VRIVPLKI_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32861328125	2	469.331488	936.648422	-0.28351	-0.00013306	-4.1108	-0.0019293	-4.3943	-0.0020624	469.3285820619397	27.123	0.5883	27.123	26.891	27.479	0					80	40	3	0	0	0	0.54199	3	3442	3442;3488;3532		0	0	1	22782	+		22848	12152	15095	15246	30930;30931;30932	30930					0.17756408341540464
VRIVPLKI	8	Unmodified	_VRIVPLKI_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.328369140625	2	469.331488	936.648422	-0.39277	-0.00018434	-3.5185	-0.0016513	-3.9112	-0.0018357	469.32856631231533	22.125	0.88482	22.125	21.891	22.776	0					122	75	3	0	0	0	0.3576	1	2009	2009		0	0	1	24660	+		22849	12152	15095	15246	30933	30933					0.17756408341540464
VRIVPLKI	8	Unmodified	_VRIVPLKI_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7616271972656	2	469.331488	936.648422	-0.49553	-0.00023257	-2.7862	-0.0013076	-3.2817	-0.0015402	469.3285769038709	17.527	2.0834	17.527	16.158	18.241	0					352	259	2	0	0	0	0.3576	1	1023	1023		0	0	1	27394	+		22850	12152	15095	15246	30934	30934					0.17756408341540464
VRIVPLKI	8	Unmodified	_VRIVPLKI_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.328125	2	469.331488	936.648422	-0.33783	-0.00015855	-4.1249	-0.0019359	-4.4627	-0.0020945	469.328614664264	24.837	0.68615	24.837	24.369	25.055	0					83	50	3	0	0	0	0.3576	1	2680	2680		0	0	1	35593	+		22851	12152	15095	15246	30935	30935					0.17756408341540464
VRIVPLKI	8	Unmodified	_VRIVPLKI_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.32861328125	2	469.331488	936.648422	-0.28351	-0.00013306	-4.1108	-0.0019293	-4.3943	-0.0020624	469.3285820619397	27.123	0.5883	27.123	26.891	27.479	0					80	40	3	0	0	0	0.3576	1	3389	3389		0	0	1	22782	+		22852	12152	15095	15246	30936	30936					0.17756408341540464
VRKKKRRR	8	Unmodified	_VRKKKRRR_					0	0	0			REV__DEK|p.E11Rfs*53|1|0.3|ENSG00000124795|chr6:18263957-18263957|C/-|frameshift_variant	REV__DEK|p.E11Rfs*53|1|0.3|ENSG00000124795|chr6:18263957-18263957|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8917846679688	2	563.891432	1125.76831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.43	1	111.44	110.94	111.94	0.015678								0	0	0	0.38822	1	28411	28411		0.69038	0	1		+		22853	7875	15096	15247	30937	30937					0.2104583445868684
VRKPLKPLVKP	11	Unmodified	_VRKPLKPLVKP_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.9365844726562	2	637.937183	1273.85981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.52	1	97.52	97.02	98.02	0								0	0	0	0.34212	1	24791	24791		0	0	1		+		22854	9232	15097	15248	30938	30938					0.23383660312629218
VRKYTRITGQ	10	Unmodified	_VRKYTRITGQ_					0	0	0			REV__chr1:86444547-86447508|145|38.97|0.26|7.25|+|1|TE_info:L2c,L2c_dup6838,L2,LINE,donor,-,86444430,86444547|None,CLCA2|2	REV__chr1:86444547-86447508|145|38.97|0.26|7.25|+|1|TE_info:L2c,L2c_dup6838,L2,LINE,donor,-,86444430,86444547|None,CLCA2|2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.356201171875	2	611.356754	1220.69895	0.14308	8.7473E-05	-0.74227	-0.00045379	-0.59918	-0.00036632	611.3561481973122	86.919	0.80278	86.946	86.653	87.456	0.027573					109	35	4	0	0	0	0.45632	1	21446	21446		1.4819	1.4819	1	1382900	+		22855	7771	15098	15249	30939	30939					0.09743285928584555
VRLALVVIV	9	Unmodified	_VRLALVVIV_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.3457946777344	2	491.344595	980.674637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.28	1	113.28	112.78	113.78	0								0	0	0	0.29525	1	29021	29021		0	0	1				22856	413	15099	15250	30940	30940					0.18352677513053095
VRLALVVIV	9	Unmodified	_VRLALVVIV_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.3455810546875	2	491.344595	980.674637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.4	1	113.4	112.9	113.9	0								0	0	0	0.29525	1	29043	29043		0	0	1				22857	413	15099	15250	30941	30941					0.18352677513053095
VRLALVVIV	9	Unmodified	_VRLALVVIV_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.345458984375	2	491.344595	980.674637	0.25573	0.00012565	2.1961	0.001079	2.4518	0.0012047	491.34528328028836	113.66	0.097153	113.68	113.65	113.75	0.013817					15	13	2	0	0	0	0.35102	1	28984	28984		0	0	1	26502			22858	413	15099	15250	30942	30942					0.18352677513053095
VRLALVVIV	9	Unmodified	_VRLALVVIV_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.34527587890625	2	491.344595	980.674637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.13	1	113.14	112.64	113.64	0.013817								0	0	0	0.29525	1	28872	28872		0	0	1				22859	413	15099	15250	30943	30943					0.18352677513053095
VRLALVVIV	9	Unmodified	_VRLALVVIV_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.3453063964844	2	491.344595	980.674637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.5	1	113.51	113.01	114.01	0.013817								0	0	0	0.29525	1	28947	28947		0	0	1				22860	413	15099	15250	30944	30944					0.18352677513053095
VRLREISEQIK	11	Unmodified	_VRLREISEQIK_					0	0	0			REV__nc|ENSG00000100336|Q9BPW4|APOL4;REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	REV__nc|ENSG00000100336|Q9BPW4|APOL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.60845947265625	3	457.608659	1369.80415	0.23022	0.00010535	-0.8339	-0.0003816	-0.60368	-0.00027625	457.60826892319983	94.226	2.1515	94.265	93.255	95.407	0.038086					178	93	3	0	0	0	0.40904	4	23590	23590;23631;23768;23812		2.2527	0	1	691320	+		22861	12763;12762	15100	15251	30945;30946;30947;30948	30945					0.1340378233435331
VRLSLELFL	9	Unmodified	_VRLSLELFL_					0	0	0			REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF	REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.335205078125	2	545.336967	1088.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.31	1	103.31	102.81	103.81	0								0	0	0	0.28527	1	26549	26549		2.0598	0	1		+		22862	12139	15101	15252	30949	30949					0.11859765925169086
VRLSTTASLVT	11	Unmodified	_VRLSTTASLVT_					0	0	0			REV__nc|ENSG00000157426|Q4L235-2|AASDH	REV__nc|ENSG00000157426|Q4L235-2|AASDH	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.3369750976562	2	574.337695	1146.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.043	1	12.105	11.605	12.605	0.061733								0	0	0	0.34212	1	9	9		0	0	1		+		22863	9776	15102	15253	30950	30950					0.09337355223237864
VRLVALPN	8	Unmodified	_VRLVALPN_					0	0	0			REV__ENST00000544562.5_1_14:23067206-23078652:+|nuORF	REV__ENST00000544562.5_1_14:23067206-23078652:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.29754638671875	2	441.281995	880.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.283	1	37.283	36.783	37.783	0								0	0	0	0.38822	1	6474	6474		0.69038	0	1		+		22864	8397	15103	15254	30951	30951					0.10438385376653514
VRMILGWHW	9	Unmodified	_VRMILGWHW_					0	0	0		ENST00000489138.5_1_7:6618325-6620357:+|nuORF	ENST00000489138.5_1_7:6618325-6620357:+|nuORF	ENST00000489138.5_1_7:6618325-6620357:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3212890625	2	599.321128	1196.6277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.494	1	18.584	18.084	19.084	0.089705								0	0	0	0.29525	1	1062	1062		0	0	1				22865	6797	15104	15255	30952	30952					0.037254946902749
VRMRLLQF	8	Unmodified	_VRMRLLQF_					0	0	0		nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1	nc|ENSG00000123124|Q9H0M0-6|WWP1	nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.77099609375	2	531.815679	1061.6168	0.68511	0.00036435	1.4511	0.00077172	2.1362	0.0011361	531.8164216674464	84.797	0.19257	84.82	84.758	84.95	0.023125					11	8	2	0	0	0	0.3576	1	20745	20745		2.5775	0	1	147320			22866	2206	15105	15256	30953	30953					0.08846092315957321
VRNHTRNCE	9	Unmodified	_VRNHTRNCE_					0	0	0			REV__ENSG00000164761|ENST00000297350|TNFRSF11B	REV__ENSG00000164761|ENST00000297350|TNFRSF11B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7693481445312	2	564.769988	1127.52542	0.13469	7.6069E-05	0.51297	0.00028971	0.64766	0.00036578	564.7692539804192	51.866	0.80588	51.866	51.652	52.458	0					66	27	4	0	0	0	0.074645	2	10873	10873;10943		37.974	3.5723	1	513270	+		22867	10006	15106	15257	30954;30955	30954					-0.03323823119330882
VRNHTRNCE	9	Unmodified	_VRNHTRNCE_					0	0	0			REV__ENSG00000164761|ENST00000297350|TNFRSF11B	REV__ENSG00000164761|ENST00000297350|TNFRSF11B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7694091796875	2	564.769988	1127.52542	0.24902	0.00014064	1.0045	0.0005673	1.2535	0.00070794	564.7692723440107	51.818	0.56563	51.885	51.681	52.247	0.067173					50	19	4	0	0	0	0.17428	1	10772	10772		21.537	1.0834	1	337130	+		22868	10006	15106	15257	30956	30956					-0.03323823119330882
VRNHTRNCE	9	Unmodified	_VRNHTRNCE_					0	0	0			REV__ENSG00000164761|ENST00000297350|TNFRSF11B	REV__ENSG00000164761|ENST00000297350|TNFRSF11B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7694091796875	2	564.769988	1127.52542	0.24902	0.00014064	1.0045	0.0005673	1.2535	0.00070794	564.7692723440107	51.818	0.56563	51.885	51.681	52.247	0.067173					50	19	4	0	0	0	0.23975	1	10722	10722		14.838	0	1	337130	+		22869	10006	15106	15257	30957	30957					-0.03323823119330882
VRNMFTEE	8	Unmodified	_VRNMFTEE_					0	0	0			REV__ENST00000558893.5_1_15:79165359-79184661:+|nuORF	REV__ENST00000558893.5_1_15:79165359-79184661:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2396850585938	2	513.239667	1024.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.089	1	17.173	16.673	17.673	0.083696								0	0	0	0.38822	1	784	784		0.69038	0	1		+		22870	10683	15107	15258	30958	30958					-0.04647353222264883
VRPGDHRRG	9	Unmodified	_VRPGDHRRG_					0	0	0			REV__ENST00000379937.6_3_14:105695225-105767012:-|nuORF	REV__ENST00000379937.6_3_14:105695225-105767012:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2726440429688	2	525.289205	1048.56386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.588	1	40.588	40.088	41.088	0								0	0	0	0.27782	1	7469	7469		3.5965	0.31518	1		+		22871	11664	15108	15259	30959	30959					0.04151850577500227
VRPHYKLLEL	10	Unmodified	_VRPHYKLLEL_					0	0	0			REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3772583007812	2	634.379697	1266.74484	0.24933	0.00015817	-3.5544	-0.0022549	-3.3051	-0.0020967	634.3778863763539	109.32	0.099846	109.34	109.28	109.38	0.019402					17	12	2	0	0	0	0.44246	1	27950	27950		6.2058	0	1	648600	+		22872	10271	15109	15260	30960	30960					0.12213931110841258
VRPPHPGA	8	Unmodified	_VRPPHPGA_					0	0	0		ENST00000607166.1_1_10:31607359-31607734:-|nuORF	ENST00000607166.1_1_10:31607359-31607734:-|nuORF	ENST00000607166.1_1_10:31607359-31607734:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.7460021972656	2	415.735212	829.455871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.577	1	99.62	99.12	100.12	0.042839								0	0	0	0.38822	1	25260	25260		0.79363	0	1				22873	7316	15110	15261	30961	30961					0.034320859942340576
VRPPPTPL	8	Unmodified	_VRPPPTPL_					0	0	0		ENST00000293379.8_1_12:54813056-54813194:-|nuORF	ENST00000293379.8_1_12:54813056-54813194:-|nuORF	ENST00000293379.8_1_12:54813056-54813194:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.7694396972656	2	438.76872	875.522887	0.14642	6.4243E-05	0.26518	0.00011635	0.4116	0.0001806	438.7693466743426	109.99	0.21723	110.01	109.88	110.1	0.017235					52	32	2	0	0	0	0.53858	1	28136	28136		2.3027	0	1	886280			22874	5952	15111	15262	30962	30962					0.0801469648533839
VRPSLAGATGV	11	Unmodified	_VRPSLAGATGV_					0	0	0		ENST00000532260.1_1_11:67374475-67374631:+|nuORF	ENST00000532260.1_1_11:67374475-67374631:+|nuORF	ENST00000532260.1_1_11:67374475-67374631:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.298583984375	2	514.298373	1026.58219	0.36859	0.00018957	0.027387	1.4085E-05	0.39598	0.00020365	514.2983341566604	90.835	0.71953	90.835	90.549	91.269	0					51	25	3	0	0	0	0.39569	1	22734	22734		5.2969	0.39987	1	388370			22875	7032	15112	15263	30963	30963					0.0699654770885445
VRQVVTESGN	10	Unmodified	_VRQVVTESGN_					0	0	0			REV__nc|ENSG00000160963|Q96A83-2|COL26A1	REV__nc|ENSG00000160963|Q96A83-2|COL26A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7885131835938	2	544.78837	1087.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.956	1	28.956	28.456	29.456	0								0	0	0	0.34018	1	3991	3991		0	0	1		+		22876	9862	15113	15264	30964	30964					0.021907519782644158
VRRGPYLPH	9	Unmodified	_VRRGPYLPH_					0	0	0			REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF	REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.8157958984375	2	547.814525	1093.6145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.54	1	116.55	116.05	117.05	0.013062								0	0	0	0.29233	1	29552	29552		0.6015	0.076735	1		+		22877	9269	15114	15265	30965	30965					0.07143379902504421
VRRQRARNR	9	Unmodified	_VRRQRARNR_					0	0	0			REV__DRGX|p.R214Afs*170|1|0.09|ENSG00000165606|chr10:49366268-49366268|G/-|frameshift_variant	REV__DRGX|p.R214Afs*170|1|0.09|ENSG00000165606|chr10:49366268-49366268|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3704223632812	2	606.368853	1210.72315	0.2543	0.0001542	2.0329	0.0012327	2.2872	0.0013869	606.3702555531629	109.52	0.13963	109.52	109.47	109.61	0					14	9	2	0	0	0	0.33704	1	28177	28177		1.8442	0.36234	1	2451200	+		22878	7901	15115	15266	30966	30966					0.12621983925487257
VRRQRARNR	9	Unmodified	_VRRQRARNR_					0	0	0			REV__DRGX|p.R214Afs*170|1|0.09|ENSG00000165606|chr10:49366268-49366268|G/-|frameshift_variant	REV__DRGX|p.R214Afs*170|1|0.09|ENSG00000165606|chr10:49366268-49366268|G/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	606.368853	1210.72315	0.2543	0.0001542	2.0329	0.0012327	2.2872	0.0013869	606.3702555531629	109.52	0.13963	109.52	109.47	109.61	0	-0.021958	0.00021344	NaN	1.8442	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2451200	+		22879	7901	15115	15266							0.12621983925487257
VRRRHSSIL	9	Unmodified	_VRRRHSSIL_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.343994140625	2	562.343981	1122.67341	0.76037	0.00042759	0.072372	4.0698E-05	0.83274	0.00046829	562.3438967513465	84.59	1.0665	84.59	84.416	85.482	0					103	48	3	0	0	0	0.3354	1	21058	21058		2.0598	0	1	1138100			22880	2870	15116	15267	30967	30967					0.11697856196838075
VRSDQYTL	8	Unmodified	_VRSDQYTL_					0	0	0			REV__ENST00000359866.8_1_19:17430707-17431082:+|nuORF	REV__ENST00000359866.8_1_19:17430707-17431082:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2532043457031	2	491.253631	980.49271	-0.081144	-3.9862E-05	-0.82077	-0.00040321	-0.90192	-0.00044307	491.2535570333268	33.086	0.95992	33.086	32.696	33.656	0					91	37	4	0	0	0	0.53118	1	5287	5287		7.2892	0	1	284690	+		22881	11534	15117	15268	30968	30968					0.0016829302946916869
VRSNGAEFL	9	Unmodified	_VRSNGAEFL_					0	0	0		ENST00000435221.6_1_1:2487647-2488066:+|nuORF	ENST00000435221.6_1_1:2487647-2488066:+|nuORF	ENST00000435221.6_1_1:2487647-2488066:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7616882324219	2	496.761623	991.508694	0.23596	0.00011722	-0.11689	-5.8066E-05	0.11908	5.9152E-05	496.7614843426629	35.462	0.46882	35.541	35.322	35.791	0.078827					43	17	3	0	0	0	0.30005	1	5850	5850		6.7232	1.4925	1	174380			22882	6504	15118	15269	30969	30969					0.012599992663922421
VRTEPDSLTW	10	Unmodified	_VRTEPDSLTW_					0	0	0			REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF	REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3052978515625	2	602.303852	1202.59315	0.45355	0.00027317	2.1711	0.0013077	2.6246	0.0015808	602.3055576931299	83.42	1.4036	83.441	82.764	84.168	0.021744					161	49	5	0	0	0	0.44727	1	20206	20206		5.2969	0.76802	1	1761800	+		22883	8156	15119	15270	30970	30970					-4.0947075376607245E-05
VRTFSESL	8	Unmodified	_VRTFSESL_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7502136230469	2	469.750724	937.486896	0.16801	7.8923E-05	-0.56406	-0.00026497	-0.39605	-0.00018604	469.7503938506121	38.533	0.51172	38.533	38.332	38.844	0					26	18	2	0	0	0	0.53494	1	6828	6828		4.756	0	1	68173			22884	7577	15120	15271	30971	30971					0.01565194517809232
VRTIHLYLVC	10	Unmodified	_VRTIHLYLVC_					0	0	0			REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.8473510742188	2	608.847176	1215.6798	0.55156	0.00033582	0.04554	2.7727E-05	0.5971	0.00036354	608.8471139149241	88.6	0.99739	88.632	88.463	89.46	0.032257					90	40	3	0	0	0	0.47119	1	22089	22089		0.45834	0	1	438040	+		22885	7696	15121	15272	30972	30972					0.08058613313323804
VRTLTVQY	8	Unmodified	_VRTLTVQY_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2826843261719	2	490.282192	978.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.65	1	47.65	47.15	48.15	0								0	0	0	0.38822	1	9603	9603		0.69038	0	1				22886	2592	15122	15273	30973	30973					0.05969760305856653
VRVLIFRK	8	Unmodified	_VRVLIFRK_					0	0	0			REV__tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	REV__tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.84814453125	2	515.847836	1029.68112	0.0099682	5.1421E-06	0.16852	8.6929E-05	0.17849	9.2071E-05	515.8479672169387	111.91	0.57257	111.91	111.79	112.36	0					85	67	2	0	0	0	0.53858	1	28629	28629		2.3027	0	1	1202600	+		22887	13074	15123	15274	30974	30974					0.16746615464421666
VRVVASKQG	9	Unmodified	_VRVVASKQG_					0	0	0		ENSG00000143195|ENST00000271417|ILDR2	ENSG00000143195|ENST00000271417|ILDR2	ENSG00000143195|ENST00000271417|ILDR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.8216247558594	2	472.287808	942.561064	-0.26872	-0.00012691	0.41913	0.00019795	0.15041	7.1039E-05	472.28794732165414	111.99	0.22408	111.99	111.92	112.15	0					26	24	2	0	0	0	0.24635	1	28669	28669		10.824	6.0679	1	596560			22888	3138	15124	15275	30975	30975					0.08748582400005489
VRVVKARPI	9	Unmodified	_VRVVKARPI_					0	0	0			REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.3637084960938	2	519.350743	1036.68693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.34	1	111.35	110.85	111.85	0.015678								0	0	0	0.29525	1	28393	28393		0	0	1		+		22889	8902	15125	15276	30976	30976					0.1700571397609565
VRVVPVKKVP	10	Unmodified	_VRVVPVKKVP_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8833618164062	2	560.881876	1119.7492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.35	1	115.36	114.86	115.86	0.013092								0	0	0	0.34018	1	29329	29329		0	0	1		+		22890	7966	15126	15277	30977	30977					0.19411440324438445
VSAEQKYH	8	Unmodified	_VSAEQKYH_					0	0	0			REV__ENSG00000146950|ENST00000380913|SHROOM2	REV__ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2401428222656	2	481.240524	960.466495	-0.61925	-0.00029801	0.14081	6.7764E-05	-0.47844	-0.00023025	481.24052251256603	18.251	0.18078	18.251	18.13	18.311	0					35	22	2	0	0	0	0.53817	1	1084	1084		2.5775	1.7838	1	11723	+		22891	9554	15127	15278	30978	30978					-0.015319761420073519
VSAIHKLMRWI	11	Unmodified	_VSAIHKLMRWI_					0	0	0		nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;ENST00000486107.5_1_3:49946449-49946602:-|nuORF	nc|ENSG00000164077|Q86VX9-2|MON1A	nc|ENSG00000164077|Q86VX9-2|MON1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.932373046875	3	451.932309	1352.7751	0.56311	0.00025449	0.31314	0.00014152	0.87624	0.000396	451.9323735718666	91.662	0.68932	91.662	91.269	91.958	0					64	25	3	0	0	0	0.41713	1	22985	22985		0.40827	0	1	269100			22892	3979	15128	15279	30979	30979					0.112819665043844
VSAIHKLMRWI	11	Unmodified	_VSAIHKLMRWI_					0	0	0		nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;ENST00000486107.5_1_3:49946449-49946602:-|nuORF	nc|ENSG00000164077|Q86VX9-2|MON1A	nc|ENSG00000164077|Q86VX9-2|MON1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.9326477050781	3	451.932309	1352.7751	0.52412	0.00023687	0.39452	0.00017829	0.91864	0.00041516	451.9323711189816	94.151	2.1279	94.151	93.339	95.467	0					292	94	4	0	0	0	0.40738	1	23936	23936		2.6312	0	1	1370700			22893	3979	15128	15279	30980	30980					0.112819665043844
VSAIHKLMRWI	11	Unmodified	_VSAIHKLMRWI_					0	0	0		nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;ENST00000486107.5_1_3:49946449-49946602:-|nuORF	nc|ENSG00000164077|Q86VX9-2|MON1A	nc|ENSG00000164077|Q86VX9-2|MON1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.93267822265625	3	451.932309	1352.7751	0.18566	8.3907E-05	0.59119	0.00026718	0.77685	0.00035109	451.93252740718833	91.653	0.65634	91.688	91.334	91.991	0.035446					60	23	3	0	0	0	0.41359	1	22875	22875		1.2148	0	1	255220			22894	3979	15128	15279	30981	30981					0.112819665043844
VSARDTALPR	10	Unmodified	_VSARDTALPR_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3064575195312	2	543.306729	1084.59891	-0.11295	-6.1368E-05	-0.081286	-4.4163E-05	-0.19424	-0.00010553	543.3066276628401	29.011	0.30914	29.011	28.867	29.176	0					25	18	2	0	0	0	0.4753	1	4028	4028		0	0	1	11491	+		22895	10862	15129	15280	30982	30982					0.05999048594776468
VSARDTALPR	10	Unmodified	_VSARDTALPR_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7415161132812	2	543.306729	1084.59891	-0.11295	-6.1368E-05	-0.081286	-4.4163E-05	-0.19424	-0.00010553	543.3066276628401	29.011	0.30914	29.011	28.867	29.176	0					25	18	2	0	0	0	0.31857	1	3980	3980		0	0	1	11491	+		22896	10862	15129	15280	30983	30983					0.05999048594776468
VSARWRSL	8	Unmodified	_VSARWRSL_					0	0	0		ENST00000481123.1_1_7:139025345-139030484:+|nuORF	ENST00000481123.1_1_7:139025345-139030484:+|nuORF	ENST00000481123.1_1_7:139025345-139030484:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.27874755859375	2	487.780151	973.545748	0.26717	0.00013032	-0.84671	-0.00041301	-0.57954	-0.00028269	487.77982299815454	47.521	0.53641	47.521	47.17	47.707	0					29	17	2	0	0	0	0.3576	1	9558	9558		5.2307	0	1	79055			22897	6748	15130	15281	30984	30984					0.05791715602799741
VSATLKSTV	9	Unmodified	_VSATLKSTV_					0	0	0		ENSG00000160299|ENST00000359568|PCNT	ENSG00000160299|ENST00000359568|PCNT	ENSG00000160299|ENST00000359568|PCNT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2686462402344	2	453.26875	904.522947	-0.014975	-6.7879E-06	-0.085905	-3.8938E-05	-0.10088	-4.5726E-05	453.2685573882872	39.607	0.55083	39.695	39.513	40.064	0.088562					38	20	3	0	0	0	0.30397	1	7082	7082		6.2058	0	1	122800			22898	3758	15131	15282	30985	30985					0.06686651694667489
VSATPESHF	9	Unmodified	_VSATPESHF_					0	0	0			REV__ENST00000514142.5_1_4:186423450-186434727:-|nuORF	REV__ENST00000514142.5_1_4:186423450-186434727:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.2782287597656	2	487.732532	973.45051	-0.054454	-2.6559E-05	0.093068	4.5392E-05	0.038614	1.8833E-05	487.7324810856106	49.088	0.34938	49.165	49.035	49.384	0.076607					26	12	3	0	0	0	0.25051	1	9886	9886		7.9102	0	1	128210	+		22899	12270	15132	15283	30986	30986					-0.037276823789056834
VSCSGSHH	8	Unmodified	_VSCSGSHH_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.183349609375	2	407.169044	812.323536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.741	1	95.78	95.28	96.28	0.038872								0	0	0	0.38822	1	24094	24094		0.79363	0	1				22900	741	15133	15284	30987	30987					-0.09013306804888543
VSDIMQQAQ	9	Unmodified	_VSDIMQQAQ_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.244873046875	2	510.244949	1018.47534	0.28115	0.00014346	-1.4104	-0.00071967	-1.1293	-0.00057621	510.24400118001915	37.834	0.7649	37.834	37.364	38.129	0					44	26	3	0	0	0	0.27332	1	6648	6648		10.074	0	1	96435			22901	1598	15134	15285	30988	30988					-0.03315370567838727
VSDIMQQAQ	9	Unmodified	_VSDIMQQAQ_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2440185546875	2	510.244949	1018.47534	0.30359	0.0001549	-0.24438	-0.00012469	0.059207	3.021E-05	510.24483844572205	37.725	0.55231	37.809	37.628	38.18	0.084476					28	19	2	0	0	0	0.27332	1	6456	6456		10.074	0	1	79466			22902	1598	15134	15285	30989	30989					-0.03315370567838727
VSDKTVVK	8	Unmodified	_VSDKTVVK_					0	0	0			REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.2629699707031	2	438.263468	874.512382	-0.35754	-0.0001567	0.18539	8.1251E-05	-0.17215	-7.5447E-05	438.2634192275759	40.572	1.3962	40.662	40.315	41.711	0.089642					120	54	3	0	0	0	0.54097	1	7560	7560		0.69038	0	1	136800	+		22903	13163	15135	15286	30990	30990					0.07010669040244011
VSDKTVVK	8	Unmodified	_VSDKTVVK_					0	0	0			REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.263427734375	2	438.263468	874.512382	-0.39263	-0.00017208	0.19327	8.4702E-05	-0.19937	-8.7375E-05	438.2633892294535	41.977	2.3369	42.067	41.667	44.004	0.089764					203	88	3	0	0	0	0.54097	1	8029	8029		0.69038	0	1	387720	+		22904	13163	15135	15286	30991	30991					0.07010669040244011
VSDSFFRPSVM	11	Unmodified	_VSDSFFRPSVM_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.3067016601562	2	636.308081	1270.60161	-0.0489	-3.1116E-05	-2.0884	-0.0013289	-2.1373	-0.00136	636.3068493809817	34.815	0.41047	34.815	34.621	35.032	0					28	15	3	0	0	0	0.4167	1	5760	5760		0	0	1	27577			22905	4181	15136	15287	30992	30992					-0.022868640625802072
VSEAEHPLL	9	Unmodified	_VSEAEHPLL_					0	0	0		nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7633972167969	2	497.763832	993.513111	-0.33505	-0.00016678	-0.67377	-0.00033538	-1.0088	-0.00050216	497.763524836876	41.595	0.52467	41.685	41.494	42.018	0.089767					54	21	4	0	0	0	0.3182	1	7685	7685		4.3292	0	1	248800			22906	7604	15137	15288	30993	30993					0.01609463689283075
VSEHQSATF	9	Unmodified	_VSEHQSATF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.30291748046875	2	503.235439	1004.45632	0.37452	0.00018847	3.9639	0.0019948	4.3384	0.0021833	503.2372189769825	71.166	0.34911	71.166	71.037	71.386	0					15	11	2	0	0	0	0.2418	1	16741	16741		13.906	3.0821	1	88073			22907	3593	15138	15289	30994	30994					-0.045725838672410646
VSEPRYFQL	9	Unmodified	_VSEPRYFQL_					0	0	0		ENST00000478389.5_1_20:57566845-57568278:+|nuORF;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000478389.5_1_20:57566845-57568278:+|nuORF	ENST00000478389.5_1_20:57566845-57568278:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7982788085938	2	569.798206	1137.58186	0.36748	0.00020939	0.63701	0.00036297	1.0045	0.00057235	569.7988025202512	57.021	0.89862	57.089	56.707	57.605	0.067249					42	28	2	0	0	0	0.048027	1	12326	12326		43.772	3.5332	1	320070			22908	1238	15139	15290	30995	30995					0.018571279890011283
VSERQVTMTE	10	Unmodified	_VSERQVTMTE_					0	0	0			REV__ENST00000469838.5_1_3:50129612-50137427:+|nuORF	REV__ENST00000469838.5_1_3:50129612-50137427:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2869262695312	2	590.287345	1178.56014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.139	1	30.215	29.715	30.715	0.075403								0	0	0	0.34018	1	4216	4216		0	0	1		+		22909	12024	15140	15291	30996	30996					-0.022000448218477686
VSETVGIPR	9	Unmodified	_VSETVGIPR_					0	0	0		ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.27105712890625	2	479.271824	956.529095	-0.25841	-0.00012385	-0.55586	-0.00026641	-0.81427	-0.00039025	479.27167899042325	44.339	0.3808	44.428	44.216	44.597	0.088924					31	12	3	0	0	0	0.27332	1	8519	8519		10.074	0	1	81992			22910	5773	15141	15292	30997	30997					0.049091699261907706
VSEVSVPPK	9	Unmodified	_VSEVSVPPK_					0	0	0		nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.2560729980469	2	471.26875	940.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.22	1	36.22	35.72	36.72	0								0	0	0	0.25692	1	6154	6154		7.9102	1.187	1				22911	3344	15142	15293	30998	30998					0.0503065169467618
VSEYNLGPL	9	Unmodified	_VSEYNLGPL_					0	0	0		ENST00000503612.1_1_4:674719-675780:+|nuORF	ENST00000503612.1_1_4:674719-675780:+|nuORF	ENST00000503612.1_1_4:674719-675780:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7426452636719	2	496.258382	990.502212	0.59158	0.00029358	-0.02385	-1.1836E-05	0.56773	0.00028174	496.2582763959278	68.853	0.48919	68.853	68.587	69.076	0					27	18	2	0	0	0	0.25644	1	15995	15995		3.9444	0	1	60386			22912	6874	15143	15294	30999	30999					0.006580613149935743
VSFDGRRF	8	Unmodified	_VSFDGRRF_					0	0	0		FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant;ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP	FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2558288574219	2	492.256508	982.498464	0.026478	1.3034E-05	-1.6419	-0.00080824	-1.6154	-0.0007952	492.2556180115594	33.505	0.47573	33.579	33.447	33.923	0.074322					27	19	3	0	0	0	0.53202	1	5234	5234		6.7232	1.4925	1	24409			22913	5747	15144	15295	31000	31000					0.0065143633181605765
VSFTKNRY	8	Unmodified	_VSFTKNRY_					0	0	0			REV__ENST00000451628.8_1_19:52384040-52391106:-|nuORF	REV__ENST00000451628.8_1_19:52384040-52391106:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7496643066406	2	507.771991	1013.52943	-0.50977	-0.00025885	-0.078074	-3.9644E-05	-0.58785	-0.00029849	507.7717524664613	42.364	0.38286	42.364	42.162	42.545	0					20	12	2	0	0	0	0.3576	1	7971	7971		4.3292	0	1	43634	+		22914	11346	15145	15296	31001	31001					0.02320589646035387
VSGNRPQI	8	Unmodified	_VSGNRPQI_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	435.7319030761719	2	435.743234	869.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.69	1	65.757	65.257	66.257	0.066872								0	0	0	0.38822	1	14950	14950		5.7604	0	1		+		22915	9769	15146	15297	31002	31002					0.03195747440474861
VSHWNWRTRL	10	Unmodified	_VSHWNWRTRL_					0	0	0		ENST00000009530.11_1_5:149782146-149782686:-|nuORF	ENST00000009530.11_1_5:149782146-149782686:-|nuORF	ENST00000009530.11_1_5:149782146-149782686:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.2297668457031	3	452.242422	1353.70544	-0.13984	-6.324E-05	-3.1977	-0.0014461	-3.3375	-0.0015094	452.2412161414122	32.947	0.80195	33.021	32.713	33.515	0.074322					30	23	2	0	0	0	0.31852	1	5179	5179		0.69767	0.19171	1	21067			22916	5776	15147	15298	31003	31003					0.04273223879977195
VSHWPGLCW	9	Unmodified	_VSHWPGLCW_					0	0	0			REV__ENST00000450651.5_1_22:21841260-21846319:-|nuORF	REV__ENST00000450651.5_1_22:21841260-21846319:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7567749023438	2	542.755287	1083.49602	0.28789	0.00015626	2.9985	0.0016275	3.2864	0.0017837	542.7579013501647	36.222	2.1049	36.304	35.794	37.899	0.081715					182	80	4	0	0	0	0.33356	1	5960	5960		2.3027	1.5091	1	212160	+		22917	11924	15148	15299	31004	31004					-0.04238735397530036
VSIDNITGR	9	Unmodified	_VSIDNITGR_					0	0	0			REV__ENST00000416949.5_1_17:41109156-41116489:-|nuORF	REV__ENST00000416949.5_1_17:41109156-41116489:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.7665710449219	2	487.766906	973.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.773	1	35.773	35.273	36.273	0								0	0	0	0.27782	1	6019	6019		3.5965	1.2938	1		+		22918	11120	15149	15300	31005	31005					0.03143981920800343
VSKKKKKKK	9	Unmodified	_VSKKKKKKK_					0	0	0		AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense;nc|ENSG00000170085|Q8NDZ2-2|SIMC1	AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense	AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3952026367188	2	551.395151	1100.77575	0.41949	0.00023131	0.33627	0.00018542	0.75576	0.00041672	551.3952785599272	109.38	0.61533	109.4	108.96	109.57	0.019402					102	78	2	0	0	0	0.35102	1	27902	27902		0	0	1	944380			22919	31	15150	15301	31006	31006					0.22939129215728826
VSKKKKKKK	9	Unmodified	_VSKKKKKKK_					0	0	0		AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense;nc|ENSG00000170085|Q8NDZ2-2|SIMC1	AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense	AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.3955688476562	2	551.395151	1100.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.7	1	108.72	108.22	109.22	0.019402								0	0	0	0.29525	1	27810	27810		0	0	1				22920	31	15150	15301	31007	31007					0.22939129215728826
VSLAEGVLAF	10	Unmodified	_VSLAEGVLAF_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.81427001953125	2	503.2844	1004.55425	0.35771	0.00018003	-0.9047	-0.00045532	-0.54699	-0.00027529	503.28453465282075	91.979	0.3026	92.015	91.887	92.19	0.03653					15	10	2	0	0	0	0.31456	1	22938	22938		10.074	5.7447	1	37865	+		22921	8750	15151	15302	31008	31008					0.0521522472874949
VSLFCKRF	8	Unmodified	_VSLFCKRF_					0	0	0			REV__ENST00000442325.6_1_18:33721144-33722806:+|nuORF	REV__ENST00000442325.6_1_18:33721144-33722806:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2772521972656	2	500.275855	998.537157	-0.069977	-3.5008E-05	2.5941	0.0012978	2.5242	0.0012628	500.27716278667754	43.063	0.35079	43.152	42.98	43.33	0.089767					31	12	3	0	0	0	0.53858	1	8129	8129		2.3027	0.24298	1	73105	+		22922	11890	15152	15303	31009	31009					0.037830256419624675
VSLFSPSVL	9	Unmodified	_VSLFSPSVL_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-4|HPSE	REV__nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7738342285156	2	474.773668	947.532783	0.19201	9.1163E-05	0.065657	3.1172E-05	0.25767	0.00012234	474.77356213513934	88.299	1.4414	88.299	88.004	89.445	0					137	57	4	0	0	0	0.092418	1	21929	21929		34.102	1.797	1	3328600	+		22923	10310	15153	15304	31010	31010					0.056918397000458754
VSLFSPSVL	9	Unmodified	_VSLFSPSVL_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-4|HPSE	REV__nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7734680175781	2	474.773668	947.532783	0.061374	2.9139E-05	0.1704	8.0903E-05	0.23178	0.00011004	474.77364993848914	88.237	1.6053	88.268	87.995	89.6	0.030045					149	62	4	0	0	0	0.12809	1	21947	21947		26.884	1.4843	1	3677000	+		22924	10310	15153	15304	31011	31011					0.056918397000458754
VSLGRRNK	8	Unmodified	_VSLGRRNK_					0	0	0		AHDC1|p.K586Nfs*37|1|0.33|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant;AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1	AHDC1|p.K586Nfs*37|1|0.33|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	AHDC1|p.K586Nfs*37|1|0.33|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.285888671875	2	465.2856	928.556647	0.38014	0.00017688	-0.1129	-5.2531E-05	0.26724	0.00012434	465.285450550884	84.832	0.3549	84.855	84.708	85.063	0.023132					25	15	2	0	0	0	0.53817	1	20805	20805		2.5775	0	1	279520			22925	19	15154	15305	31012	31012					0.08951117977073864
VSLIAVVPVLA	11	Unmodified	_VSLIAVVPVLA_					0	0	0			REV__ENST00000493997.1_1_2:55086744-55094271:+|nuORF	REV__ENST00000493997.1_1_2:55086744-55094271:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.767578125	2	540.854993	1079.69543	0.55265	0.0002989	-0.09527	-5.1527E-05	0.45738	0.00024737	540.8547768169666	69.483	0.43517	69.483	69.296	69.732	0					22	14	2	0	0	0	0.39378	1	16211	16211		5.7319	0.43497	1	279290	+		22926	12167	15155	15306	31013	31013					0.15877223102052085
VSLLSFYF	8	Unmodified	_VSLLSFYF_					0	0	0		ENST00000360370.8_1_3:125725252-125725423:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000360370.8_1_3:125725252-125725423:-|nuORF	ENST00000360370.8_1_3:125725252-125725423:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2703552246094	2	488.262936	974.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.634	1	44.722	44.222	45.222	0.08754								0	0	0	0.38822	1	8564	8564		9.3474	0	1				22927	6152	15156	15307	31014	31014					0.023044546713208547
VSLPPRVRRT	10	Unmodified	_VSLPPRVRRT_					0	0	0			REV__nc|ENSG00000027869|Q9NP31-2|SH2D2A	REV__nc|ENSG00000027869|Q9NP31-2|SH2D2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8668212890625	2	590.867289	1179.72002	0.66003	0.00038999	-0.83836	-0.00049536	-0.17833	-0.00010537	590.8665500665563	98.344	0.57869	98.385	98.145	98.724	0.041939					72	30	3	0	0	0	0.46827	1	24860	24860		1.3295	0	1	417380	+		22928	12744	15157	15308	31015	31015					0.13735296028107769
VSLQKLCPWFK	11	Unmodified	_VSLQKLCPWFK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	449.9114685058594	3	450.253048	1347.73731	0.1485	6.6863E-05	-2.5229	-0.0011359	-2.3744	-0.0010691	450.25211821850706	58.363	0.27829	58.363	58.293	58.572	0					12	8	2	0	0	0	0.31096	1	12842	12842		1.4551	0	1	59171			22929	4978	15158	15309	31016	31016					0.07735455518877643
VSLQKLCPWFK	11	Unmodified	_VSLQKLCPWFK_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	450.253048	1347.73731	0.11816	5.3201E-05	-2.4165	-0.0010881	-2.2984	-0.0010349	450.25181547387297	58.251	0.29181	58.322	58.184	58.476	0.070477	-0.020725	5.2831E-05	NaN	1.4551	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44226			22930	4978	15158	15309							0.07735455518877643
VSLRRRSRFRR	11	Unmodified	_VSLRRRSRFRR_					0	0	0		ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.97467041015625	3	496.97467	1487.90218	0.3581	0.00017797	0.072512	3.6037E-05	0.43062	0.000214	496.9745711053093	107.43	0.37108	107.46	107.27	107.64	0.025711					111	37	4	0	0	0	0.41713	1	27503	27503		0.40827	0.31342	1	677320			22931	5782	15159	15310	31017	31017					0.17774448493560158
VSLWELLF	8	Unmodified	_VSLWELLF_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7842102050781	2	503.784036	1005.55352	0.51263	0.00025825	0.15767	7.9431E-05	0.6703	0.00033768	503.78391063412744	97.965	1.182	97.965	97.438	98.62	0					135	60	3	0	0	0	0.45077	2	24865	24865;24950		19.439	0	1	550190			22932	5715	15160	15311	31018;31019	31018					0.05096430079720449
VSMAVHRIGR	10	Unmodified	_VSMAVHRIGR_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3191528320312	2	563.319117	1124.62368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.865	1	17.865	17.365	18.365	0								0	0	0	0.34018	1	1007	1007		0	0	1				22933	1575	15161	15312	31020	31020					0.06635405196539068
VSMAVHRIGR	10	Unmodified	_VSMAVHRIGR_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3192138671875	2	563.319117	1124.62368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.924	1	18.924	18.424	19.424	0								0	0	0	0.34018	1	1239	1239		0	0	1				22934	1575	15161	15312	31021	31021					0.06635405196539068
VSNSWAQAV	9	Unmodified	_VSNSWAQAV_					0	0	0		ENST00000379177.5_1_X:24167867-24169901:+|nuORF;nc|ENSG00000006555|Q5TAA0-2|TTC22	ENST00000379177.5_1_X:24167867-24169901:+|nuORF	ENST00000379177.5_1_X:24167867-24169901:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7164306640625	2	481.240524	960.466495	0.073111	3.5184E-05	0.056759	2.7315E-05	0.12987	6.2499E-05	481.2406643956997	38.06	0.42299	38.144	37.96	38.383	0.084476					25	15	2	0	0	0	0.25921	1	6547	6547		1.4819	0	1	69147			22935	6273	15162	15313	31022	31022					-0.015319761420073519
VSPAIFYEL	9	Unmodified	_VSPAIFYEL_					0	0	0			REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.7794189453125	2	519.778951	1037.54335	0.23674	0.00012305	0.806	0.00041894	1.0427	0.00054199	519.7791095156743	90.069	0.7152	90.069	89.834	90.549	0					69	28	3	0	0	0	0.0053304	1	22515	22515		81.613	13.532	1	2197000	+		22936	10348	15163	15314	31023	31023					0.02607822354457312
VSPAIFYEL	9	Unmodified	_VSPAIFYEL_					0	0	0			REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.77880859375	2	519.778951	1037.54335	0.049954	2.5965E-05	0.76778	0.00039908	0.81773	0.00042504	519.7792872281167	90.017	0.8859	90.051	89.822	90.708	0.034065					75	35	3	0	0	0	0.011655	1	22353	22353		64.236	10.404	1	1443600	+		22937	10348	15163	15314	31024	31024					0.02607822354457312
VSPAIFYEL	9	Unmodified	_VSPAIFYEL_					0	0	0			REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	519.778951	1037.54335	0.23674	0.00012305	0.806	0.00041894	1.0427	0.00054199	519.7791095156743	90.069	0.7152	90.069	89.834	90.549	0	0.0091431	2.2057E-05	NaN	81.613	69	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2197000	+		22938	10348	15163	15314							0.02607822354457312
VSPAIFYEL	9	Unmodified	_VSPAIFYEL_					0	0	0			REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	519.778951	1037.54335	0.049954	2.5965E-05	0.76778	0.00039908	0.81773	0.00042504	519.7792872281167	90.017	0.8859	90.051	89.822	90.708	0.034065	-0.0091431	-1.767E-05	NaN	81.613	75	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1443600	+		22939	10348	15163	15314							0.02607822354457312
VSPGSSVYDT	10	Unmodified	_VSPGSSVYDT_					0	0	0			REV__ENSG00000061794|ENST00000081029|MRPS35	REV__ENSG00000061794|ENST00000081029|MRPS35	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7851257324219	2	506.235104	1010.45566	-0.20956	-0.00010609	0.07773	3.935E-05	-0.13183	-6.6739E-05	506.23498457398085	29.882	0.54387	29.882	29.721	30.265	0					45	23	3	0	0	0	0.31783	1	4246	4246		3.9444	0.3479	1	40706	+		22940	8082	15164	15315	31025	31025					-0.04915423306954381
VSQIKSPF	8	Unmodified	_VSQIKSPF_					0	0	0		nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.26837158203125	2	453.258185	904.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.654	1	39.654	39.154	40.154	0								0	0	0	0.38822	1	7189	7189		5.7604	0	1				22941	3889	15165	15316	31026	31026					0.04574686385808491
VSQKPDPMYL	10	Unmodified	_VSQKPDPMYL_					0	0	0			REV__nc|ENSG00000158458|O14511-6|NRG2	REV__nc|ENSG00000158458|O14511-6|NRG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.29833984375	2	589.299724	1176.5849	0.079692	4.6963E-05	-2.6712	-0.0015741	-2.5915	-0.0015272	589.2985785876019	39.692	1.097	39.692	39.433	40.53	0					62	39	3	0	0	0	0.45627	1	7217	7217		3.5965	0	1	94837	+		22942	12823	15166	15317	31027	31027					0.003666350515004524
VSQRRVGPPL	10	Unmodified	_VSQRRVGPPL_					0	0	0			REV__ENSG00000177465|ENST00000326303|ACOT4	REV__ENSG00000177465|ENST00000326303|ACOT4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2516479492188	2	554.832914	1107.65128	0.77082	0.00042768	-0.33044	-0.00018334	0.44039	0.00024434	554.8325592288663	84.66	0.52132	84.683	84.514	85.035	0.023125					49	29	2	0	0	0	0.31811	1	20682	20682		2.9952	2.9952	1	659510	+		22943	10428	15167	15318	31028	31028					0.10175631728407097
VSQVVNNKT	9	Unmodified	_VSQVVNNKT_					0	0	0			REV__ENST00000553115.1_1_12:55516583-55517273:-|nuORF	REV__ENST00000553115.1_1_12:55516583-55517273:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.2646179199219	2	494.774731	987.534909	0.11313	5.5975E-05	-0.071138	-3.5197E-05	0.041994	2.0777E-05	494.7747193353721	33.501	0.42066	33.575	33.424	33.845	0.074326					22	16	2	0	0	0	0.25921	1	5252	5252		1.4819	0	1	26381	+		22944	12444	15168	15319	31029	31029					0.04064268437844021
VSREFEFEA	9	Unmodified	_VSREFEFEA_					0	0	0		ENSG00000166257|ENST00000299333|SCN3B	ENSG00000166257|ENST00000299333|SCN3B	ENSG00000166257|ENST00000299333|SCN3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7846069335938	2	557.264196	1112.51384	-0.0079795	-4.4467E-06	-1.373	-0.00076515	-1.381	-0.00076959	557.764141380216	45.713	0.11208	45.713	45.617	45.729	0					5	3	2	0	0	0	0.25051	1	9019	9019		7.9102	0	1	26235			22945	4145	15169	15320	31030	31030					-0.03791741661666492
VSRFYVYCWM	10	Unmodified	_VSRFYVYCWM_					0	0	0		ENST00000473145.5_1_3:52445201-52445348:+|nuORF	ENST00000473145.5_1_3:52445201-52445348:+|nuORF	ENST00000473145.5_1_3:52445201-52445348:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.2297668457031	3	451.875471	1352.60458	0.073872	3.3381E-05	0.86706	0.0003918	0.94093	0.00042518	451.87585877947043	33.412	0.49937	33.412	33.328	33.828	0					23	17	2	0	0	0	0.3184	1	5330	5330		1.7423	0.41263	1	24501			22946	6688	15170	15321	31031	31031					-0.05761312209415337
VSRLYYPEIF	10	Unmodified	_VSRLYYPEIF_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000533661.1_1_11:10038431-10064504:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.8427734375	2	643.842613	1285.67067	0.59284	0.00038169	-0.39714	-0.00025569	0.1957	0.000126	643.8421227965941	82.127	0.72743	82.127	81.836	82.563	0					47	25	3	0	0	0	0.38912	1	20087	20087		13.042	0	1	178640			22947	2636	15171	15322	31032	31032					0.03926543228635637
VSSANQSLTI	10	Unmodified	_VSSANQSLTI_					0	0	0			REV__ENST00000281317.9_1_4:146540545-146560281:+|nuORF	REV__ENST00000281317.9_1_4:146540545-146560281:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.27392578125	2	510.272021	1018.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.459	1	94.459	93.959	94.959	0								0	0	0	0.33916	1	23860	23860		1.1933	0	1		+		22948	11298	15172	15323	31033	31033					0.020965448553852184
VSSKFQKR	8	Unmodified	_VSSKFQKR_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.287841796875	2	490.287808	978.561064	-0.17604	-8.631E-05	0.044854	2.1991E-05	-0.13119	-6.4319E-05	490.28784273015657	28.533	0.27324	28.615	28.453	28.726	0.082134					20	14	2	0	0	0	0.53894	1	3741	3741		2.0598	0	1	25971			22949	2900	15173	15324	31034	31034					0.07092582399991443
VSSKRSKLV	9	Unmodified	_VSSKRSKLV_					0	0	0			REV__nc|ENSG00000014123|O94874-2|UFL1	REV__nc|ENSG00000014123|O94874-2|UFL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.81549072265625	2	502.316566	1002.61858	0.29148	0.00014642	0.50701	0.00025468	0.79849	0.00040109	502.3168113093114	101.71	0.2544	101.71	101.68	101.94	0					42	21	2	0	0	0	0.25579	1	26081	26081		4.3292	0	1	937190	+		22950	7990	15174	15325	31035	31035					0.11737424605564684
VSSMTSCYLR	10	Unmodified	_VSSMTSCYLR_					0	0	0		ENST00000192788.5_1_6:34844358-34844442:+|nuORF	ENST00000192788.5_1_6:34844358-34844442:+|nuORF	ENST00000192788.5_1_6:34844358-34844442:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7633666992188	2	573.767734	1145.52091	0.28501	0.00016353	-3.4509	-0.00198	-3.1659	-0.0018165	573.7636521447669	56.153	2.6089	56.153	55.608	58.217	0					426	94	8	0	0	0	0.086538	1	12240	12240		47.594	1.5734	1	17838000			22951	5784	15175	15326	31036	31036					-0.046024683771292985
VSSPFIVSL	9	Unmodified	_VSSPFIVSL_					0	0	0		ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7735290527344	2	474.773668	947.532783	0.19201	9.1163E-05	0.065657	3.1172E-05	0.25767	0.00012234	474.77356213513934	88.299	1.4414	88.299	88.004	89.445	0					137	57	4	0	0	0	0.14091	4	22097	22097;22147;22208;22292		25.399	9.5521	1	3328600			22952	1828	15176	15327	31037;31038;31039;31040	31037					0.056918397000458754
VSSPFIVSL	9	Unmodified	_VSSPFIVSL_					0	0	0		ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.77362060546875	2	474.773668	947.532783	0.061374	2.9139E-05	0.1704	8.0903E-05	0.23178	0.00011004	474.77364993848914	88.237	1.6053	88.268	87.995	89.6	0.030045					149	62	4	0	0	0	0.14091	3	22003	22003;22058;22174		25.399	9.5521	1	3677000			22953	1828	15176	15327	31041;31042;31043	31041					0.056918397000458754
VSSSCTLF	8	Unmodified	_VSSSCTLF_					0	0	0		ENST00000244745.3_2_6:21594004-21594211:+|nuORF	ENST00000244745.3_2_6:21594004-21594211:+|nuORF	ENST00000244745.3_2_6:21594004-21594211:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1991882324219	2	422.199479	842.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.145	1	76.145	75.645	76.645	0								0	0	0	0.38822	1	18286	18286		0.79363	0	1				22954	5830	15177	15328	31044	31044					-0.04309214545310169
VSSSRNRSR	9	Unmodified	_VSSSRNRSR_					0	0	0			REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61	REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7836303710938	2	524.783953	1047.55335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.295	1	17.379	16.879	17.879	0.083696								0	0	0	0.29525	1	825	825		0	0	1		+		22955	8524	15178	15329	31045	31045					0.03147823132417216
VSSYPYLAI	9	Unmodified	_VSSYPYLAI_					0	0	0			REV__ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant	REV__ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7716064453125	2	506.771126	1011.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.51	1	84.51	84.01	85.01	0								0	0	0	0.23884	1	20833	20833		11.64	0	1		+		22956	10896	15179	15330	31046	31046					0.02239535837418316
VSSYPYLAI	9	Unmodified	_VSSYPYLAI_					0	0	0			REV__ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant	REV__ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7711486816406	2	506.771126	1011.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.773	1	84.773	84.273	85.273	0								0	0	0	0.27613	1	20915	20915		3.9444	0	1		+		22957	10896	15179	15330	31047	31047					0.02239535837418316
VSTFLAIFY	9	Unmodified	_VSTFLAIFY_					0	0	0		tr|U7STE6|U7STE6_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01457PE=4SV=1	tr|U7STE6|U7STE6_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01457PE=4SV=1	tr|U7STE6|U7STE6_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01457PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.2905883789062	2	530.789318	1059.56408	0.23368	0.00012403	-1.4521	-0.00077075	-1.2184	-0.00064671	530.7881886863049	103.34	0.3196	103.34	103.11	103.43	0					37	21	2	0	0	0	0.33356	1	26550	26550		2.3027	0	1	52701			22958	13580	15180	15331	31048	31048					0.03668412734123194
VSTVASDHF	9	Unmodified	_VSTVASDHF_					0	0	0			REV__DCAF4|p.R366H|1|0.15|ENSG00000119599|chr14:72955614-72955614|G/A|missense_variant	REV__DCAF4|p.R366H|1|0.15|ENSG00000119599|chr14:72955614-72955614|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.716064453125	2	481.732532	961.45051	0.036395	1.7533E-05	-0.0099279	-4.7826E-06	0.026467	1.275E-05	481.7324326773506	38.458	1.0137	38.458	38.017	39.03	0					61	36	2	0	0	0	0.29105	1	6724	6724		7.9102	0	1	50472	+		22959	7871	15181	15332	31049	31049					-0.031756823789010014
VSTVMCHLLGR	11	Unmodified	_VSTVMCHLLGR_					0	0	0			REV__ENSG00000140107|ENST00000361529|SLC25A47	REV__ENSG00000140107|ENST00000361529|SLC25A47	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2313232421875	3	405.882737	1214.62638	0.26083	0.00010586	3.2374	0.001314	3.4982	0.0014199	406.2184937734919	34.782	0.46693	34.782	34.595	35.062	0					20	17	2	0	0	0	0.40824	1	5678	5678		2.4348	0.34878	1	16996	+		22960	9361	15182	15333	31050	31050					0.027654925391516372
VSTYARYSW	9	Unmodified	_VSTYARYSW_					0	0	0			REV__MORC1|p.F237Y|1|0.19|ENSG00000114487|chr3:109069737-109069737|A/T|missense_variant	REV__MORC1|p.F237Y|1|0.19|ENSG00000114487|chr3:109069737-109069737|A/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7748413085938	2	566.774731	1131.53491	0.37512	0.00021261	0.90919	0.00051531	1.2843	0.00072791	567.2772851438946	102.35	0.8761	102.4	101.89	102.76	0.040916					116	68	2	0	0	0	0.27929	1	26032	26032		9.3831	0	1	67839	+		22961	12737	15183	15334	31051	31051					-0.025597315621553207
VSTYYTLAL	9	Unmodified	_VSTYYTLAL_					0	0	0		ENST00000535220.1_1_12:6933100-6934099:+|nuORF;ENSG00000250510|ENST00000311268|GPR162	ENST00000535220.1_1_12:6933100-6934099:+|nuORF	ENST00000535220.1_1_12:6933100-6934099:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.30322265625	2	515.776408	1029.53826	-0.30674	-0.00015821	-3.1466	-0.001623	-3.4534	-0.0017812	515.7746482055453	40.879	0.39001	40.879	40.736	41.126	0					19	13	2	0	0	0	0.24263	1	7580	7580		12.532	0	1	52312			22962	5685	15184	15335	31052	31052					0.02467518491835108
VSVANTSHF	9	Unmodified	_VSVANTSHF_					0	0	0			REV__ENST00000326764.9_2_19:54972239-54972944:+|nuORF	REV__ENST00000326764.9_2_19:54972239-54972944:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.716064453125	2	481.240524	960.466495	0.069404	3.34E-05	0.12528	6.0288E-05	0.19468	9.3688E-05	481.24054576773466	38.161	0.49442	38.161	37.96	38.455	0					33	16	3	0	0	0	0.24791	1	6724	6724		10.074	0	1	66839	+		22963	11410	15185	15336	31053	31053					-0.015319761419959832
VSVLFFFF	8	Unmodified	_VSVLFFFF_					0	0	0			REV__ENST00000325110.10_1_5:43290181-43290289:-|nuORF	REV__ENST00000325110.10_1_5:43290181-43290289:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7947998046875	2	503.275847	1004.53714	0.26556	0.00013365	1.0892	0.00054816	1.3547	0.00068181	503.2762524595563	88.953	0.42069	88.985	88.749	89.17	0.032257					21	16	2	0	0	0	0.3576	1	21968	21968		6.3541	0	1	80173	+		22964	11406	15186	15337	31054	31054					0.0350534891362031
VSVLMLFIKK	10	Unmodified	_VSVLMLFIKK_					0	0	0			REV__tr|U7SU41|U7SU41_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01090PE=4SV=1	REV__tr|U7SU41|U7SU41_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01090PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3706665039062	2	589.372495	1176.73044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.92	1	113.94	113.44	114.44	0.013336								0	0	0	0.33984	1	29028	29028		0.40072	0	1		+		22965	13182	15187	15338	31055	31055					0.1491414263830393
VSVLVGGGIGV	11	Unmodified	_VSVLVGGGIGV_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.79229736328125	2	478.792392	955.570232	-0.44327	-0.00021223	0.044975	2.1534E-05	-0.39829	-0.0001907	478.7923134163876	26.162	0.40714	26.162	26.011	26.418	0					65	34	2	0	0	0	0.41892	1	3233	3233		0	0	1	38198			22966	2876	15188	15339	31056	31056					0.09066930965684605
VSVREEPS	8	Unmodified	_VSVREEPS_					0	0	0			REV__ENSG00000124217|ENST00000244051|MOCS3	REV__ENSG00000124217|ENST00000244051|MOCS3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.26055908203125	2	451.732532	901.45051	-0.0040542	-1.8314E-06	-0.59225	-0.00026754	-0.59631	-0.00026937	451.7322240615901	30.209	0.58805	30.209	30.006	30.594	0					36	29	2	0	0	0	0.3576	1	4416	4416		4.3292	0	1	18196	+		22967	8950	15189	15340	31057	31057					-0.004156823789003283
VSWFDLEL	8	Unmodified	_VSWFDLEL_					0	0	0		ENST00000537971.5_1_12:3395045-3395321:+|nuORF	ENST00000537971.5_1_12:3395045-3395321:+|nuORF	ENST00000537971.5_1_12:3395045-3395321:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.755615234375	2	504.755475	1007.4964	0.045888	2.3162E-05	-0.032908	-1.661E-05	0.01298	6.5518E-06	504.75526092802835	86.938	1.3094	86.938	86.639	87.948	0					151	52	4	0	0	0	0.30669	2	21530	21530;21709		34.102	5.0209	1	4675100			22968	7049	15190	15341	31058;31059	31058					-0.007050371966784041
VSWFDLEL	8	Unmodified	_VSWFDLEL_					0	0	0		ENST00000537971.5_1_12:3395045-3395321:+|nuORF	ENST00000537971.5_1_12:3395045-3395321:+|nuORF	ENST00000537971.5_1_12:3395045-3395321:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7564392089844	2	504.755475	1007.4964	0.096189	4.8552E-05	0.016509	8.3332E-06	0.1127	5.6885E-05	504.75526918118834	86.926	0.94961	86.953	86.63	87.58	0.027573					127	41	4	0	0	0	0.46914	1	21346	21346		16.942	2.104	1	3650300			22969	7049	15190	15341	31060	31060					-0.007050371966784041
VSYFCEYWLF	10	Unmodified	_VSYFCEYWLF_					0	0	0		nc|ENSG00000146039|Q9Y2C5-4|SLC17A4;nc|ENSG00000146039|Q9Y2C5-2|SLC17A4;ENSG00000146039|ENST00000377905|SLC17A4	nc|ENSG00000146039|Q9Y2C5-4|SLC17A4	nc|ENSG00000146039|Q9Y2C5-4|SLC17A4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8700256347656	3	452.870492	1355.58965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.184	1	86.184	85.684	86.684	0								0	0	0	0.33952	1	21345	21345		0.77653	0	1				22970	3273	15191	15342	31061	31061					-0.07392480805742707
VSYMCTFLF	9	Unmodified	_VSYMCTFLF_					0	0	0		ENST00000198767.10_1_16:15154396-15154894:-|nuORF	ENST00000198767.10_1_16:15154396-15154894:-|nuORF	ENST00000198767.10_1_16:15154396-15154894:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.75244140625	2	555.753564	1109.49257	0.47028	0.00026136	2.0567	0.001143	2.527	0.0014044	555.7532748215021	56.094	0.39278	56.16	56.041	56.434	0.066448					28	15	3	0	0	0	0.25979	1	12051	12051		11.64	2.2572	1	219390			22971	5785	15192	15343	31062	31062					-0.0577916628640196
VSYRDSGL	8	Unmodified	_VSYRDSGL_					0	0	0		PCDH19|p.D375Y|1|0.3|ENSG00000165194|chrX:100407475-100407475|C/A|missense_variant	PCDH19|p.D375Y|1|0.3|ENSG00000165194|chrX:100407475-100407475|C/A|missense_variant	PCDH19|p.D375Y|1|0.3|ENSG00000165194|chrX:100407475-100407475|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.2190856933594	2	448.727249	895.439946	0.23835	0.00010696	-0.85795	-0.00038499	-0.6196	-0.00027803	448.7269300180112	38.452	0.78147	38.539	38.236	39.017	0.08688					44	28	2	0	0	0	0.53494	1	6661	6661		4.756	0	1	59251			22972	7662	15193	15344	31063	31063					-0.011956650333331709
VSYVAAYVSF	10	Unmodified	_VSYVAAYVSF_					0	0	0			REV__ENSG00000169962|ENST00000339381|TAS1R3	REV__ENSG00000169962|ENST00000339381|TAS1R3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7576904296875	2	553.281857	1104.54916	0.46903	0.00025951	-0.56987	-0.0003153	-0.10084	-5.5793E-05	553.2815748818468	83.677	0.42125	83.699	83.527	83.948	0.021744					24	14	3	0	0	0	0.30541	1	20421	20421		19.257	4.4187	1	82710	+		22973	10191	15194	15345	31064	31064					0.0010692086611925333
VTAGLLLLLL	10	Unmodified	_VTAGLLLLLL_					0	0	0			REV__ENST00000592694.5_1_19:38795766-38795970:-|nuORF	REV__ENST00000592694.5_1_19:38795766-38795970:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.3538818359375	2	513.352086	1024.68962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.3	1	104.3	103.8	104.8	0								0	0	0	0.34018	1	26833	26833		0	0	1		+		22974	12590	15195	15346	31065	31065					0.1782612459039683
VTAGLLLLLL	10	Unmodified	_VTAGLLLLLL_					0	0	0			REV__ENST00000592694.5_1_19:38795766-38795970:-|nuORF	REV__ENST00000592694.5_1_19:38795766-38795970:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.353271484375	2	513.352086	1024.68962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.551	1	22.653	22.153	23.153	0.10178								0	0	0	0.34018	1	2055	2055		0	0	1		+		22975	12590	15195	15346	31066	31066					0.1782612459039683
VTAIQEEN	8	Unmodified	_VTAIQEEN_					0	0	0			REV__nc|ENSG00000137843|Q9NQU5-2|PAK6	REV__nc|ENSG00000137843|Q9NQU5-2|PAK6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.16864013671875	2	452.224539	902.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.244	1	50.244	49.744	50.744	0								0	0	0	0.38822	1	10387	10387		3.9444	0	1		+		22976	8424	15196	15347	31067	31067					-0.020593886158053465
VTASNNISAAN	11	Unmodified	_VTASNNISAAN_					0	0	0		ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	ENST00000532739.1_1_16:16450692-16458759:+|nuORF;nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.264404296875	2	531.264727	1060.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.622	1	66.622	66.122	67.122	0								0	0	0	0.26146	1	15380	15380		19.362	1.2156	1				22977	7443;7034	15197	15348	31068	31068					-0.012935272927506958
VTATLIKNQL	10	Unmodified	_VTATLIKNQL_					0	0	0			REV__ENST00000491673.1_1_17:39779200-39780782:-|nuORF	REV__ENST00000491673.1_1_17:39779200-39780782:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8369140625	2	550.837331	1099.66011	-0.15872	-8.743E-05	0.13412	7.388E-05	-0.024598	-1.355E-05	550.8372644117178	23.079	0.58543	23.079	22.922	23.508	0					118	56	3	0	0	0	0.45794	1	2348	2348		3.2813	0	1	88099	+	+	22978	7842	15198	15349	31069	31069					0.11426560574250288
VTAVRRDP	8	Unmodified	_VTAVRRDP_					0	0	0		ENST00000495759.5_1_9:111631304-111631394:-|nuORF	ENST00000495759.5_1_9:111631304-111631394:-|nuORF	ENST00000495759.5_1_9:111631304-111631394:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.264404296875	2	457.264333	912.514114	0.74145	0.00033904	-0.61582	-0.00028159	0.12563	5.7447E-05	457.26398175933406	79.819	0.85834	79.819	79.311	80.169	0					50	29	2	0	0	0	0.53557	1	19377	19377		4.3292	0	1	142790			22979	6833	15199	15350	31070	31070					0.05435722848858404
VTCQGSIPTEV	11	Unmodified	_VTCQGSIPTEV_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2788696289062	2	567.278989	1132.54342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.88	1	115.89	115.39	116.39	0.013084								0	0	0	0.34212	1	29438	29438		0	0	1				22980	13768	15200	15351	31071	31071					-0.017545457078767868
VTDATPDFLSL	11	Unmodified	_VTDATPDFLSL_					0	0	0		TNXB|p.S2859F|1|0.5|ENSG00000168477|chr6:32053603-32053603|G/A|missense_variant	TNXB|p.S2859F|1|0.5|ENSG00000168477|chr6:32053603-32053603|G/A|missense_variant	TNXB|p.S2859F|1|0.5|ENSG00000168477|chr6:32053603-32053603|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3192138671875	2	589.800611	1177.58667	0.63995	0.00037745	-0.50167	-0.00029589	0.13828	8.1559E-05	589.8002237880852	78.121	0.52843	78.151	77.846	78.374	0.030159					28	17	2	0	0	0	0.31032	1	18721	18721		7.609	0	1	68089			22981	13436	15201	15352	31072	31072					0.004979673410844043
VTDIFSLSAL	10	Unmodified	_VTDIFSLSAL_					0	0	0			REV__ENSG00000181958|ENST00000641526|OR4A15	REV__ENSG00000181958|ENST00000641526|OR4A15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2955322265625	2	533.294965	1064.57538	0.47447	0.00025303	0.17015	9.0743E-05	0.64463	0.00034378	533.2949059745182	68.471	0.77182	68.471	68.211	68.983	0					37	28	2	0	0	0	0.42335	1	16004	16004		9.3831	3.1773	1	106360	+		22982	10547	15202	15353	31073	31073					0.04567190037596447
VTDIFSLSAL	10	Unmodified	_VTDIFSLSAL_					0	0	0			REV__ENSG00000181958|ENST00000641526|OR4A15	REV__ENSG00000181958|ENST00000641526|OR4A15	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	533.294965	1064.57538	0.55062	0.00029364	0.20294	0.00010823	0.75356	0.00040187	533.2949953359108	68.465	0.71094	68.529	68.192	68.903	0.063507	0.028905	2.1783E-05	NaN	9.3831	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115640	+		22983	10547	15202	15353							0.04567190037596447
VTECDEDPV	9	Unmodified	_VTECDEDPV_					0	0	0		nc|ENSG00000148541|Q8NE31-2|FAM13C;nc|ENSG00000148541|Q8NE31-3|FAM13C;ENSG00000148541|ENST00000618804|FAM13C	nc|ENSG00000148541|Q8NE31-2|FAM13C	nc|ENSG00000148541|Q8NE31-2|FAM13C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2978820800781	2	503.705322	1005.39609	0.1933	9.7364E-05	0.29844	0.00015033	0.49173	0.00024769	503.70531359153546	37.246	0.28669	37.246	37.106	37.393	0					17	10	2	0	0	0	0.25579	1	6460	6460		4.3292	0	1	24299			22984	3369	15203	15354	31074	31074					-0.10639062312634451
VTEDLPQLGD	10	Unmodified	_VTEDLPQLGD_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.768798828125	2	543.769311	1085.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.518	1	19.518	19.018	20.018	0								0	0	0	0.34018	1	1376	1376		0	0	1				22985	540	15204	15355	31075	31075					-0.015271787270648929
VTESANQLTQR	11	Unmodified	_VTESANQLTQR_					0	0	0			REV__ENSG00000054219|ENST00000263636|LY75	REV__ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.8233032226562	2	623.822941	1245.63133	-0.27344	-0.00017058	0.42717	0.00026648	0.15373	9.5902E-05	623.8233852065356	34.154	1.2969	34.154	33.883	35.18	0					165	49	6	0	0	0	0.020335	5	5536	5488;5536;5577;5627;5712		107.56	29.503	1	3146500	+		22986	8062	15205	15356	31076;31077;31078;31079;31080	31077					0.018337912071046958
VTESANQLTQR	11	Unmodified	_VTESANQLTQR_					0	0	0			REV__ENSG00000054219|ENST00000263636|LY75	REV__ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2176513671875	3	416.217719	1245.63133	0.19294	8.0306E-05	-0.42901	-0.00017856	-0.23607	-9.8255E-05	416.21754452953695	34.133	0.84819	34.133	33.906	34.754	0					94	33	4	0	0	0	0.1513	2	5537	5537;5578		26.346	11.946	1	563260	+		22987	8062	15205	15356	31081;31082	31081					0.018337912071046958
VTESANQLTQR	11	Unmodified	_VTESANQLTQR_					0	0	0			REV__ENSG00000054219|ENST00000263636|LY75	REV__ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.8231811523438	2	623.822941	1245.63133	-0.073333	-4.5747E-05	0.28357	0.0001769	0.21024	0.00013115	623.8232400181495	34.09	1.3981	34.167	33.902	35.3	0.076244					166	58	6	0	0	0	0.020241	5	5441	5352;5394;5441;5482;5578		107.56	30.705	1	2817600	+		22988	8062	15205	15356	31083;31084;31085;31086;31087	31085					0.018337912071046958
VTESANQLTQR	11	Unmodified	_VTESANQLTQR_					0	0	0			REV__ENSG00000054219|ENST00000263636|LY75	REV__ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2176208496094	3	416.217719	1245.63133	-0.12756	-5.3094E-05	-0.0029216	-1.216E-06	-0.13048	-5.431E-05	416.2177136979353	34.096	0.59428	34.172	33.948	34.542	0.076244					79	23	4	0	0	0	0.1513	3	5369	5369;5417;5457		31.446	13.874	1	559150	+		22989	8062	15205	15356	31088;31089;31090	31088					0.018337912071046958
VTESANQLTQR	11	Unmodified	_VTESANQLTQR_					0	0	0			REV__ENSG00000054219|ENST00000263636|LY75	REV__ENSG00000054219|ENST00000263636|LY75	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	416.217719	1245.63133	-0.12756	-5.3094E-05	-0.0029216	-1.216E-06	-0.13048	-5.431E-05	416.2177136979353	34.096	0.59428	34.172	33.948	34.542	0.076244	0.01954	0.00026327	NaN	26.346	79	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559150	+		22990	8062	15205	15356							0.018337912071046958
VTFFCDLLL	9	Unmodified	_VTFFCDLLL_					0	0	0		nc|ENSG00000099957|O15547-2|P2RX6;ENSG00000099957|ENST00000413302|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.3002319335938	2	535.783179	1069.5518	0.78314	0.0004196	0.50775	0.00027204	1.2909	0.00069164	535.7834120484131	98.824	0.19189	98.866	98.805	98.997	0.041931					17	10	2	0	0	0	0.25174	1	25035	25035		7.2892	0	1	93408			22991	1143	15206	15357	31091	31091					0.019810529994401804
VTFFCDLLL	9	Unmodified	_VTFFCDLLL_					0	0	0		nc|ENSG00000099957|O15547-2|P2RX6;ENSG00000099957|ENST00000413302|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	535.783179	1069.5518	0.58523	0.00031355	-0.0073254	-3.9249E-06	0.5779	0.00030963	535.7831648670677	98.982	0.22197	98.982	98.822	99.044	0	0.057753	-0.00025739	NaN	7.2892	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76835			22992	1143	15206	15357							0.019810529994401804
VTFRDVAVF	9	Unmodified	_VTFRDVAVF_					0	0	0		ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant;ENSG00000177932|ENST00000315475|ZNF354C;ENSG00000234284|ENST00000444149|ZNF879	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.783447265625	2	527.290017	1052.56548	0.49696	0.00026204	-2.4948	-0.0013155	-1.9979	-0.0010535	527.2898696684182	63.892	0.83564	63.892	63.649	64.485	0					66	29	3	0	0	0	0.20194	1	14530	14530		24.021	2.2739	1	391180			22993	4723	15207	15358	31092	31092					0.04130046822888289
VTFRDVAVF	9	Unmodified	_VTFRDVAVF_					0	0	0		ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant;ENSG00000177932|ENST00000315475|ZNF354C;ENSG00000234284|ENST00000444149|ZNF879	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	527.290017	1052.56548	0.37954	0.00020013	-2.6626	-0.0014039	-2.283	-0.0012038	527.2897278029428	63.763	0.72903	63.834	63.617	64.346	0.071018	-0.029046	-9.6433E-05	NaN	24.021	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395350			22994	4723	15207	15358							0.04130046822888289
VTFTFPFEF	9	Unmodified	_VTFTFPFEF_					0	0	0		ENST00000397278.7_1_22:36649096-36649195:+|nuORF;ENST00000358502.9_1_22:36629478-36635667:-|nuORF	ENST00000397278.7_1_22:36649096-36649195:+|nuORF	ENST00000397278.7_1_22:36649096-36649195:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.778564453125	2	567.778951	1133.54335	0.0048592	2.7589E-06	-1.1946	-0.00067825	-1.1897	-0.00067549	567.7783908296891	90.619	1.4808	90.653	90.263	91.743	0.034058					69	56	2	0	0	0	0.18364	1	22545	22545		20.454	3.3407	1	262620			22995	6139	15208	15359	31093	31093					-0.0180817764553467
VTGIHPMN	8	Unmodified	_VTGIHPMN_					0	0	0		nc|ENSG00000158321|Q8WXX7-5|AUTS2;nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.25115966796875	2	434.720913	867.427273	0.61265	0.00026633	-0.33684	-0.00014643	0.27581	0.0001199	434.7208704039755	75.123	0.33716	75.123	74.988	75.326	0					17	12	2	0	0	0	0.3576	1	17950	17950		5.2307	3.1709	1	200570			22996	3687	15209	15360	31094	31094					-0.011743996972313653
VTGIILSY	8	Unmodified	_VTGIILSY_					0	0	0			REV__tr|U7STP9|U7STP9_FUSNUInnermembraneproteinYbhLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01143PE=3SV=1	REV__tr|U7STP9|U7STP9_FUSNUInnermembraneproteinYbhLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01143PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.2554626464844	2	433.255111	864.49567	0.36251	0.00015706	-0.981	-0.00042502	-0.61849	-0.00026796	433.25527705085307	99.715	2.0396	99.758	99.251	101.29	0.042831					375	125	5	0	0	0	0.49441	1	25357	25357		13.508	0	1	158410000	+		22997	13177	15210	15361	31095	31095					0.05800168154280527
VTGPELSTV	9	Unmodified	_VTGPELSTV_					0	0	0			REV__ENST00000395560.7_1_7:48134363-48147951:+|nuORF	REV__ENST00000395560.7_1_7:48134363-48147951:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.7447204589844	2	451.745108	901.475663	0.6152	0.00027791	-0.74584	-0.00033693	-0.13064	-5.9017E-05	451.7445833538149	53.915	0.41993	53.915	53.711	54.131	0					25	14	2	0	0	0	0.23216	1	11512	11512		14.838	0	1	122130	+		22998	11718	15211	15362	31096	31096					0.020983724236771195
VTGPELSTV	9	Unmodified	_VTGPELSTV_					0	0	0			REV__ENST00000395560.7_1_7:48134363-48147951:+|nuORF	REV__ENST00000395560.7_1_7:48134363-48147951:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	451.745108	901.475663	0.6152	0.00027791	-0.74584	-0.00033693	-0.13064	-5.9017E-05	451.7445833538149	53.915	0.41993	53.915	53.711	54.131	0	0.00022796	-0.00011131	NaN	14.838	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122130	+		22999	11718	15211	15362							0.020983724236771195
VTGPELSTV	9	Unmodified	_VTGPELSTV_					0	0	0			REV__ENST00000395560.7_1_7:48134363-48147951:+|nuORF	REV__ENST00000395560.7_1_7:48134363-48147951:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	451.745108	901.475663	0.37812	0.00017081	-0.49324	-0.00022282	-0.11513	-5.2007E-05	451.7448407269977	53.85	0.48106	53.915	53.717	54.198	0.065372	-0.00022796	0.00011691	NaN	14.838	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97629	+		23000	11718	15211	15362							0.020983724236771195
VTHEGSTVEK	10	Unmodified	_VTHEGSTVEK_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5;nc|ENSG00000211685|A0M8Q6|IGLC7	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.77490234375	2	543.774928	1085.5353	-0.36708	-0.00019961	1.1709	0.00063672	0.80385	0.00043711	543.7755654603121	15.452	0.59552	15.452	15.249	15.845	0					184	76	4	0	0	0	0.26772	3	559	536;559;583		26.021	9.8716	1	300040		+	23001	7596	15212	15363	31097;31098;31099	31098					-0.004043566329528403
VTHPLNYVF	9	Unmodified	_VTHPLNYVF_					0	0	0			REV__ENSG00000173456|ENST00000311413|RNF26	REV__ENSG00000173456|ENST00000311413|RNF26	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7657470703125	2	545.290017	1088.56548	0.51194	0.00027915	-0.79209	-0.00043192	-0.28015	-0.00015276	545.2896361566237	55.495	0.56764	55.495	55.215	55.782	0					38	19	3	0	0	0	0.2298	1	11994	11994		16.942	1.0951	1	184160	+		23002	10320	15213	15364	31100	31100					0.024740468228856116
VTIESCAPTLF	11	Unmodified	_VTIESCAPTLF_					0	0	0		nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	nc|ENSG00000174611|Q8NBH2-3|KY	nc|ENSG00000174611|Q8NBH2-3|KY	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7987060546875	2	590.799557	1179.58456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.699	1	80.723	80.223	81.223	0.023605								0	0	0	0.3074	1	19515	19515		12.241	0.60036	1				23003	4591	15214	15365	31101	31101					0.0019521533163242566
VTIEVPTPL	9	Unmodified	_VTIEVPTPL_					0	0	0			REV__ENSG00000121057|ENST00000337714|AKAP1	REV__ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7868957519531	2	484.786776	967.558998	0.54244	0.00026297	-0.2817	-0.00013656	0.26074	0.0001264	484.78662300411855	80.974	0.38921	80.974	80.813	81.202	0					19	12	2	0	0	0	0.32112	1	19804	19804		3.9444	0	1	94887	+		23004	8891	15215	15366	31102	31102					0.07392108871522396
VTILIGDF	8	Unmodified	_VTILIGDF_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.25469970703125	2	439.255111	876.49567	0.40999	0.00018009	-0.96003	-0.0004217	-0.55004	-0.00024161	439.25463998155954	98.587	0.51038	98.629	98.462	98.973	0.041931					46	28	2	0	0	0	0.53345	1	24954	24954		5.7604	0	1	113260			23005	4054	15216	15367	31103	31103					0.05248168154287214
VTILIGDF	8	Unmodified	_VTILIGDF_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	439.255111	876.49567	0.6835	0.00030023	-1.2876	-0.00056559	-0.60411	-0.00026536	439.25441936998794	98.663	0.43039	98.663	98.431	98.861	0	0.016996	-0.00010942	NaN	5.7604	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106170			23006	4054	15216	15367							0.05248168154287214
VTITETTVIE	10	Unmodified	_VTITETTVIE_					0	0	0		nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF;ENSG00000189339|ENST00000617444|SLC35E2B	nc|ENSG00000215790|P0CK97-2|SLC35E2A	nc|ENSG00000215790|P0CK97-2|SLC35E2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.263916015625	2	553.302987	1104.59142	0.57819	0.00031991	-2.2478	-0.0012437	-1.6696	-0.00092382	553.3014856639945	91.968	0.39534	92.005	91.859	92.254	0.03653					18	13	2	0	0	0	0.31456	1	22937	22937		14.838	0	1	124450			23007	5195	15217	15368	31104	31104					0.0433085148383725
VTKKKKKKK	9	Unmodified	_VTKKKKKKK_					0	0	0		AluSz6_dup36815|chr15:60362892-60363058:+|3.339432781041445|0.0012375329650786|11.4|522.0|5|2|sense	AluSz6_dup36815|chr15:60362892-60363058:+|3.339432781041445|0.0012375329650786|11.4|522.0|5|2|sense	AluSz6_dup36815|chr15:60362892-60363058:+|3.339432781041445|0.0012375329650786|11.4|522.0|5|2|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.9041748046875	2	558.402976	1114.7914	0.46299	0.00025853	-0.49128	-0.00027433	-0.028296	-1.5801E-05	558.4024690990067	111.27	0.68179	111.28	110.85	111.53	0.015678					196	97	3	0	0	0	0.35102	1	28410	28410		0	0	1	1507900			23008	29	15218	15369	31105	31105					0.23859415732772504
VTKRYRALT	9	Unmodified	_VTKRYRALT_					0	0	0			REV__nc|ENSG00000002079|Q9H6N6|MYH16	REV__nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3347778320312	2	554.33529	1106.65603	-0.06377	-3.535E-05	-1.1816	-0.00065498	-1.2453	-0.00069033	554.3345458390622	25.024	0.6515	25.024	24.852	25.504	0					92	51	3	0	0	0	0.3182	1	2866	2866		4.3292	0.38484	1	35962	+		23009	12743	15219	15370	31106	31106					0.10696515871154588
VTKRYRALT	9	Unmodified	_VTKRYRALT_					0	0	0			REV__nc|ENSG00000002079|Q9H6N6|MYH16	REV__nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	554.33529	1106.65603	0.18769	0.00010404	-1.8474	-0.0010241	-1.6597	-0.00092004	554.3341633369951	24.706	0.54421	24.802	24.66	25.204	0.096075	-0.1111	-0.00026696	NaN	4.3292	90	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67123	+		23010	12743	15219	15370							0.10696515871154588
VTLFTIFAF	9	Unmodified	_VTLFTIFAF_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3;ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3	nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000100678|P57103-7|SLC8A3	nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2798461914062	2	529.799686	1057.58482	0.10735	5.6873E-05	1.4943	0.00079166	1.6016	0.00084853	529.800364310459	34.424	0.31323	34.5	34.39	34.703	0.076244					21	14	2	0	0	0	0.25504	1	5505	5505		4.756	0	1	32412			23011	4900;7470	15220	15371	31107	31107					0.058330031137984406
VTLGVLYS	8	Unmodified	_VTLGVLYS_					0	0	0		ENSG00000214511|ENST00000695931|HIGD1C	ENSG00000214511|ENST00000695931|HIGD1C	ENSG00000214511|ENST00000695931|HIGD1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.2471008300781	2	426.247286	850.48002	0.59353	0.00025299	-0.90305	-0.00038492	-0.30952	-0.00013193	426.24686541432067	100.25	0.44235	100.25	100.02	100.46	0					43	24	2	0	0	0	0.53423	2	25610	25610;25654		5.2307	0	1	209900			23012	5568	15221	15372	31108;31109	31108					0.048798816372254805
VTLGVLYS	8	Unmodified	_VTLGVLYS_					0	0	0		ENSG00000214511|ENST00000695931|HIGD1C	ENSG00000214511|ENST00000695931|HIGD1C	ENSG00000214511|ENST00000695931|HIGD1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.2471008300781	2	426.247286	850.48002	0.33183	0.00014144	-0.75377	-0.00032129	-0.42193	-0.00017985	426.2469429385227	100.22	0.48138	100.27	100.05	100.54	0.042839					43	25	2	0	0	0	0.53858	1	25456	25456		2.3027	0	1	222870			23013	5568	15221	15372	31110	31110					0.048798816372254805
VTLLLGLLLP	10	Unmodified	_VTLLLGLLLP_					0	0	0		ENST00000316341.7_1_16:67977830-67978124:-|nuORF;ENSG00000213398|ENST00000264005|LCAT	ENST00000316341.7_1_16:67977830-67978124:-|nuORF	ENST00000316341.7_1_16:67977830-67978124:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.3609619140625	2	526.359911	1050.70527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.731	1	30.807	30.307	31.307	0.075403								0	0	0	0.34018	1	4391	4391		0	0	1				23014	5544	15222	15373	31111	31111					0.18194411107424457
VTLLQFSNTSF	11	Unmodified	_VTLLQFSNTSF_					0	0	0			REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	418.8874206542969	3	419.555561	1255.64485	0.28497	0.00011956	0.41045	0.00017221	0.69542	0.00029177	419.55576744935837	48.09	1.0906	48.17	47.663	48.754	0.080029					57	38	2	0	0	0	0.31089	1	9661	9661		2.6312	0.54523	1	87720	+		23015	12906	15223	15374	31112	31112					0.027256489863702882
VTLMMRYYK	9	Unmodified	_VTLMMRYYK_					0	0	0			REV__PDHA2|p.G274Efs*6|1|0.7|ENSG00000163114|chr4:95840970-95840970|G/-|frameshift_variant	REV__PDHA2|p.G274Efs*6|1|0.7|ENSG00000163114|chr4:95840970-95840970|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8142700195312	2	602.814487	1203.61442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.05	1	104.05	103.55	104.55	0								0	0	0	0.28631	1	26762	26762		1.8442	0	1		+		23016	9925	15224	15375	31113	31113					0.02075875795981119
VTLTNHKKSVR	11	Unmodified	_VTLTNHKKSVR_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.88232421875	2	641.883136	1281.75172	0.31039	0.00019924	-0.88194	-0.0005661	-0.57155	-0.00036687	641.8823509531409	88.617	0.77555	88.617	88.181	88.956	0					79	30	3	0	0	0	0.40693	2	22081	22081;22129		2.7352	0	1	407930			23017	4447	15225	15376	31114;31115	31114					0.12211243991396259
VTLTVPKN	8	Unmodified	_VTLTVPKN_					0	0	0			REV__ENSG00000101337|ENST00000398022|TM9SF4	REV__ENSG00000101337|ENST00000398022|TM9SF4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.2677917480469	2	436.26601	870.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.55	1	101.55	101.05	102.05	0								0	0	0	0.38822	1	26017	26017		7.9102	0	1		+		23018	8422	15226	15377	31116	31116					0.0770297290284816
VTNAQGQIIGT	11	Unmodified	_VTNAQGQIIGT_					0	0	0		nc|ENSG00000106536|P78424-2|POU6F2;nc|ENSG00000106536|P78424|POU6F2;ENSG00000106536|ENST00000518318|POU6F2	nc|ENSG00000106536|P78424-2|POU6F2	nc|ENSG00000106536|P78424-2|POU6F2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2989501953125	2	551.29857	1100.58259	-0.28359	-0.00015634	0.20952	0.00011551	-0.074061	-4.083E-05	551.2986588830665	17.064	0.29264	17.064	16.953	17.245	0					60	35	3	0	0	0	0.41892	1	871	871		0	0	1	28472			23019	1525	15227	15378	31117	31117					0.03631922638078322
VTNNKRAK	8	Unmodified	_VTNNKRAK_					0	0	0			REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.73358154296875	2	465.777608	929.540663	0.049181	2.2907E-05	0.027458	1.2789E-05	0.076639	3.5697E-05	465.77751543048	79.185	0.50693	79.211	78.908	79.415	0.026436					28	17	2	0	0	0	0.3576	1	18992	18992		4.756	0	1	41609	+		23020	12800	15228	15379	31118	31118					0.07307411740168845
VTPDNRLSD	9	Unmodified	_VTPDNRLSD_					0	0	0		tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2744140625	2	508.753995	1015.49344	-0.13446	-6.8408E-05	0.71356	0.00036302	0.57909	0.00029462	508.75448769316876	29.16	0.33004	29.238	29.138	29.468	0.078289					26	20	2	0	0	0	0.25281	1	3899	3899		6.7232	2.3939	1	21331			23021	13483	15229	15380	31119	31119					-0.0136891232148173
VTPEDDDCL	9	Unmodified	_VTPEDDDCL_					0	0	0		nc|ENSG00000119866|Q9H165-8|BCL11A;nc|ENSG00000119866|Q9H165-3|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A;ENST00000489183.1_1_2:60771455-60773217:-|nuORF	nc|ENSG00000119866|Q9H165-8|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2979431152344	2	503.705322	1005.39609	0.22793	0.00011481	0.11229	5.6563E-05	0.34023	0.00017137	503.7051005570469	37.169	0.32795	37.253	37.046	37.374	0.084476					13	11	2	0	0	0	0.25504	1	6300	6300		4.756	0.42677	1	24239			23022	2092	15230	15381	31120	31120					-0.1063906231264582
VTPIMDESF	9	Unmodified	_VTPIMDESF_					0	0	0			REV__ENST00000399029.3_1_1:28447646-28447811:-|nuORF	REV__ENST00000399029.3_1_1:28447646-28447811:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.8030395507812	2	519.74425	1037.47395	0.50461	0.00026227	-0.45125	-0.00023454	0.053362	2.7734E-05	519.7438608119833	67.49	1.3901	67.49	66.987	68.377	0					86	52	2	0	0	0	0.24263	1	15903	15903		12.532	0	1	260810	+		23023	9161	15231	15382	31121	31121					-0.04329004656597135
VTPKQQEL	8	Unmodified	_VTPKQQEL_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7116394042969	2	471.766374	941.518196	-0.1086	-5.1233E-05	0.04374	2.0635E-05	-0.064859	-3.0598E-05	471.76638322651155	35.671	0.29494	35.749	35.625	35.92	0.078827					15	10	2	0	0	0	0.3576	1	5872	5872		1.8442	1.8442	1	32000	+		23024	10269	15232	15383	31122	31122					0.04509767551905952
VTPSEVLPF	9	Unmodified	_VTPSEVLPF_					0	0	0		ENST00000606901.1_1_5:140705901-140706042:+|nuORF	ENST00000606901.1_1_5:140705901-140706042:+|nuORF	ENST00000606901.1_1_5:140705901-140706042:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.77166748046875	2	494.771126	987.527698	0.96809	0.00047898	-0.033065	-1.6359E-05	0.93502	0.00046262	494.77102916448223	80.389	0.56163	80.389	80.14	80.702	0					31	19	2	0	0	0	0.25209	1	19632	19632		12.532	0	1	219530			23025	7311	15233	15384	31123	31123					0.0334353583742768
VTPSEVLPF	9	Unmodified	_VTPSEVLPF_					0	0	0		ENST00000606901.1_1_5:140705901-140706042:+|nuORF	ENST00000606901.1_1_5:140705901-140706042:+|nuORF	ENST00000606901.1_1_5:140705901-140706042:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7718811035156	2	494.771126	987.527698	0.77743	0.00038465	0.15759	7.7973E-05	0.93502	0.00046262	494.7711558196622	80.36	0.55099	80.383	80.157	80.708	0.023605					40	19	3	0	0	0	0.1182	1	19420	19420		28.487	0	1	218320			23026	7311	15233	15384	31124	31124					0.0334353583742768
VTRFNEEV	8	Unmodified	_VTRFNEEV_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.253173828125	2	497.253631	992.49271	-0.44382	-0.00022069	-0.20496	-0.00010192	-0.64878	-0.00032261	497.25343488162065	42.051	0.68929	42.051	41.856	42.545	0					46	23	3	0	0	0	0.41225	1	7943	7943		24.674	0	1	238360			23027	5709	15234	15385	31125	31125					-0.003837069705241447
VTRKIKDNFY	10	Unmodified	_VTRKIKDNFY_					0	0	0		tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1	tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1	tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3624877929688	2	642.358962	1282.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.41	1	108.44	107.94	108.94	0.022224								0	0	0	0.33762	1	27749	27749		2.9952	1.3426	1				23028	13496	15235	15386	31126	31126					0.0733275035152019
VTRRRSRSR	9	Unmodified	_VTRRRSRSR_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.3552856445312	2	587.355411	1172.69627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.788	1	19.883	19.383	20.383	0.095232								0	0	0	0.29525	1	1353	1353		0	0	1				23029	4247	15236	15387	31127	31127					0.11682875314318153
VTRTQKEL	8	Unmodified	_VTRTQKEL_					0	0	0			REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF	REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2301330566406	2	487.785099	973.555644	-0.26568	-0.0001296	-0.11418	-5.5695E-05	-0.37986	-0.00018529	487.7850318397005	31.743	0.34422	31.743	31.552	31.897	0					22	13	2	0	0	0	0.3576	1	4829	4829		4.756	0	1	23059	+		23030	12552	15237	15388	31128	31128					0.06780858817501212
VTRTQKEL	8	Unmodified	_VTRTQKEL_					0	0	0			REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF	REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2301330566406	2	487.785099	973.555644	-0.22229	-0.00010843	-0.094155	-4.5927E-05	-0.31644	-0.00015436	487.7851354398605	31.672	0.33044	31.746	31.595	31.926	0.073782					21	15	2	0	0	0	0.3576	1	4684	4684		0.6015	0	1	20328	+		23031	12552	15237	15388	31129	31129					0.06780858817501212
VTSEFCRFSP	10	Unmodified	_VTSEFCRFSP_					0	0	0			REV__ENST00000215906.5_1_22:26839892-26840330:+|nuORF	REV__ENST00000215906.5_1_22:26839892-26840330:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.792236328125	2	586.773874	1171.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.906	1	55.906	55.406	56.406	0								0	0	0	0.30402	1	12113	12113		17.113	1.8644	1		+		23032	11170	15238	15389	31130	31130					-0.04571108642426225
VTSFSKVNLLF	11	Unmodified	_VTSFSKVNLLF_					0	0	0			REV__ENST00000558841.1_1_15:52338240-52338339:+|nuORF	REV__ENST00000558841.1_1_15:52338240-52338339:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8475952148438	2	627.858264	1253.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.618	1	82.618	82.118	83.118	0								0	0	0	0.25329	1	20260	20260		20.415	11.669	1		+		23033	12472	15239	15390	31131	31131					0.08527116262757772
VTSTKLNL	8	Unmodified	_VTSTKLNL_					0	0	0			REV__nc|ENSG00000257923|P39880-6|CUX1	REV__nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.26312255859375	2	438.263468	874.512382	-0.067141	-2.9425E-05	-0.31163	-0.00013658	-0.37877	-0.000166	438.26319719285726	42.771	2.9063	42.771	42.22	45.126	0					172	102	2	0	0	0	0.54081	1	8251	8251		0.79363	0	1	120250	+		23034	11102	15240	15391	31132	31132					0.07010669040209905
VTSTKLNL	8	Unmodified	_VTSTKLNL_					0	0	0			REV__nc|ENSG00000257923|P39880-6|CUX1	REV__nc|ENSG00000257923|P39880-6|CUX1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	438.263468	874.512382	-0.067141	-2.9425E-05	-0.31163	-0.00013658	-0.37877	-0.000166	438.26319719285726	42.771	2.9063	42.771	42.22	45.126	0	0	0	NaN	0.79363	172	102	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120250	+		23035	11102	15240	15391							0.07010669040209905
VTSTTFLCL	9	Unmodified	_VTSTTFLCL_					0	0	0		ENST00000515223.1_1_5:180660600-180660825:+|nuORF	ENST00000515223.1_1_5:180660600-180660825:+|nuORF	ENST00000515223.1_1_5:180660600-180660825:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7576904296875	2	492.757161	983.499769	0.47291	0.00023303	-0.56023	-0.00027606	-0.087318	-4.3027E-05	492.7568911128027	82.905	0.49394	82.905	82.757	83.251	0					26	16	2	0	0	0	0.21398	1	20364	20364		16.942	0	1	78640			23036	6935	15241	15392	31133	31133					0.00735889585678251
VTSWYDKL	8	Unmodified	_VTSWYDKL_					0	0	0			REV__ENSG00000110245|ENST00000227667|APOC3	REV__ENSG00000110245|ENST00000227667|APOC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.26171875	2	506.260925	1010.5073	0.74159	0.00037544	-0.0090235	-4.5682E-06	0.73257	0.00037087	506.26084875308413	80.567	0.8279	80.567	80.228	81.056	0					44	28	2	0	0	0	0.42348	1	19614	19614		23.148	6.2061	1	149880	+		23037	8664	15242	15393	31134	31134					0.0024636517761109644
VTSWYDKL	8	Unmodified	_VTSWYDKL_					0	0	0			REV__ENSG00000110245|ENST00000227667|APOC3	REV__ENSG00000110245|ENST00000227667|APOC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.26129150390625	2	506.260925	1010.5073	0.63243	0.00032017	0.078231	3.9606E-05	0.71066	0.00035978	506.2609030715433	80.534	0.57751	80.557	80.273	80.851	0.023605					40	20	3	0	0	0	0.4772	1	19445	19445		15.847	4.2069	1	196770	+		23038	8664	15242	15393	31135	31135					0.0024636517761109644
VTTMGCRHGF	10	Unmodified	_VTTMGCRHGF_					0	0	0			REV__ENSG00000241360|ENST00000215904|PDXP	REV__ENSG00000241360|ENST00000215904|PDXP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7566528320312	2	554.754961	1107.49537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.908	1	58.979	58.479	59.479	0.070477								0	0	0	0.33395	1	12889	12889		7.2892	0	1		+		23039	11059	15243	15394	31136	31136					-0.054078981088650835
VTTNLILG	8	Unmodified	_VTTNLILG_					0	0	0			REV__SLC41A2|p.D399N|1|0.08|ENSG00000136052|chr12:104861351-104861351|C/T|missense_variant	REV__SLC41A2|p.D399N|1|0.08|ENSG00000136052|chr12:104861351-104861351|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.22784423828125	2	415.752736	829.490919	-0.45948	-0.00019103	0.075614	3.1437E-05	-0.38387	-0.00015959	415.7527801295671	42.21	0.45276	42.3	42.119	42.571	0.089764					23	16	2	0	0	0	0.3576	1	7874	7874		4.756	4.756	1	29885	+		23040	12988	15244	15395	31137	31137					0.06935284011535714
VTTTASSF	8	Unmodified	_VTTTASSF_					0	0	0		nc|ENSG00000170293|Q8IZV2-2|CMTM8;ENSG00000170293|ENST00000307526|CMTM8	nc|ENSG00000170293|Q8IZV2-2|CMTM8	nc|ENSG00000170293|Q8IZV2-2|CMTM8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.20379638671875	2	407.203076	812.391599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.953	1	33.953	33.453	34.453	0								0	0	0	0.38822	1	5471	5471		2.5775	0	1				23041	4384	15245	15396	31138	31138					-0.022101586732219403
VTVAGPSAPCR	11	Unmodified	_VTVAGPSAPCR_					0	0	0			REV__ENST00000507146.5_1_4:156680611-156696137:+|nuORF	REV__ENST00000507146.5_1_4:156680611-156696137:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3825073242188	2	529.276583	1056.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.75	1	115.76	115.26	116.26	0.013092								0	0	0	0.34212	1	29411	29411		0	0	1		+		23042	12232	15246	15397	31139	31139					0.012606149400426148
VTVELIPGV	9	Unmodified	_VTVELIPGV_					0	0	0			REV__DOCK5|p.L1114V|1|0.57|ENSG00000147459|chr8:25368627-25368627|C/G|missense_variant	REV__DOCK5|p.L1114V|1|0.57|ENSG00000147459|chr8:25368627-25368627|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	463.2505187988281	2	463.781493	925.548434	0.55217	0.00025608	-0.6205	-0.00028778	-0.068334	-3.1692E-05	463.7810866894811	69.076	0.24409	69.076	68.888	69.132	0					12	8	2	0	0	0	0.2298	1	16071	16071		16.942	2.104	1	72198	+		23043	7897	15247	15398	31140	31140					0.082681262171036
VTVELIPGV	9	Unmodified	_VTVELIPGV_					0	0	0			REV__DOCK5|p.L1114V|1|0.57|ENSG00000147459|chr8:25368627-25368627|C/G|missense_variant	REV__DOCK5|p.L1114V|1|0.57|ENSG00000147459|chr8:25368627-25368627|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	463.25048828125	2	463.781493	925.548434	0.064982	3.0138E-05	0.27423	0.00012718	0.33921	0.00015732	463.7814434303169	68.907	0.23281	68.969	68.821	69.054	0.062126					12	8	2	0	0	0	0.25051	1	15907	15907		7.9102	0.62092	1	40522	+		23044	7897	15247	15398	31141	31141					0.082681262171036
VTVGSITR	8	Unmodified	_VTVGSITR_					0	0	0			REV__ENST00000521025.1_1_8:22471695-22472046:-|nuORF	REV__ENST00000521025.1_1_8:22471695-22472046:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.22796630859375	2	416.747985	831.481417	0.30723	0.00012804	-0.54738	-0.00022812	-0.24015	-0.00010008	416.74768327890274	39.184	0.46082	39.184	38.918	39.379	0					24	16	2	0	0	0	0.3576	1	7075	7075		4.756	0	1	32814	+		23045	12295	15248	15399	31142	31142					0.0589351572597252
VTVLKKALDE	10	Unmodified	_VTVLKKALDE_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3369750976562	2	558.337164	1114.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.949	1	24.049	23.549	24.549	0.099739								0	0	0	0.34018	1	2427	2427		0	0	1				23046	2625	15249	15400	31143	31143					0.10703140854343474
VTVPVEILS	9	Unmodified	_VTVPVEILS_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7685852050781	2	478.786776	955.558998	-0.079689	-3.8154E-05	-2.4104	-0.0011541	-2.4901	-0.0011922	478.78547338142016	89.464	0.37044	89.496	89.33	89.701	0.032257					18	13	2	0	0	0	0.26684	1	22242	22242		10.824	0	1	50893			23047	4029	15250	15401	31144	31144					0.0794410887151571
VTVQVVVVR	9	Unmodified	_VTVQVVVVR_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.8213195800781	2	499.821484	997.628415	0.33546	0.00016767	-0.074995	-3.7484E-05	0.26047	0.00013019	499.8214523702533	48.095	0.21839	48.095	47.941	48.159	0					11	7	2	0	0	0	0.27332	1	9738	9738		10.074	6.1295	1	23423			23048	5172	15251	15402	31145	31145					0.1295061261095043
VTVQVVVVR	9	Unmodified	_VTVQVVVVR_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.8215026855469	2	499.821484	997.628415	0.54482	0.00027231	-0.13393	-6.6942E-05	0.41089	0.00020537	499.8213111568406	47.955	0.19092	48.036	47.924	48.114	0.080032					9	6	2	0	0	0	0.30005	1	9582	9582		6.7232	4.8789	1	29242			23049	5172	15251	15402	31146	31146					0.1295061261095043
VTVTNKNIS	9	Unmodified	_VTVTNKNIS_					0	0	0			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.27740478515625	2	488.277106	974.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.233	1	34.233	33.733	34.733	0								0	0	0	0.21325	1	5555	5555		16.149	1.3108	1		+		23050	9398	15252	15403	31147	31147					0.051371525806075624
VTVVQRQDSV	10	Unmodified	_VTVVQRQDSV_					0	0	0			REV__ATP2B1|p.A793T|1|0.29|ENSG00000070961|chr12:89610002-89610002|C/T|missense_variant	REV__ATP2B1|p.A793T|1|0.29|ENSG00000070961|chr12:89610002-89610002|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.81103515625	2	565.811845	1129.60914	0.27262	0.00015425	-0.27517	-0.00015569	-0.0025457	-1.4404E-06	565.8116985961481	37.685	0.96215	37.769	37.42	38.383	0.084476					52	33	3	0	0	0	0.46083	1	6437	6437		2.7352	0	1	83404	+		23051	7729	15253	15404	31148	31148					0.04951611529349975
VTYEMDHG	8	Unmodified	_VTYEMDHG_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1981201171875	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.617	1	14.617	14.117	15.117	0								0	0	0	0.38822	1	403	403		2.3027	0	1				23052	4046	15254	15405	31149	31149					-0.09679304039013914
VTYEMDHG	8	Unmodified	_VTYEMDHG_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1980285644531	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.055	1	16.055	15.555	16.555	0								0	0	0	0.38822	1	660	660		0.69038	0	1				23053	4046	15254	15405	31150	31150					-0.09679304039013914
VTYEMDHG	8	Unmodified	_VTYEMDHG_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.19744873046875	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.773	1	16.773	16.273	17.273	0								0	0	0	0.38822	1	793	793		0.69038	0	1				23054	4046	15254	15405	31151	31151					-0.09679304039013914
VTYEMDHG	8	Unmodified	_VTYEMDHG_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1981201171875	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.162	1	16.24	15.74	16.74	0.077806								0	0	0	0.38822	1	617	617		0.69038	0	1				23055	4046	15254	15405	31152	31152					-0.09679304039013914
VTYEMDHG	8	Unmodified	_VTYEMDHG_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1985778808594	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.046	1	18.13	17.63	18.63	0.083696								0	0	0	0.38822	1	972	972		0.69038	0	1				23056	4046	15254	15405	31153	31153					-0.09679304039013914
VTYEMDHG	8	Unmodified	_VTYEMDHG_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1977233886719	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.546	1	18.636	18.136	19.136	0.089705								0	0	0	0.38822	1	1074	1074		0.69038	0	1				23057	4046	15254	15405	31154	31154					-0.09679304039013914
VTYEMDHG	8	Unmodified	_VTYEMDHG_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.19818115234375	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.137	1	19.227	18.727	19.727	0.089705								0	0	0	0.38822	1	1205	1205		0.69038	0	1				23058	4046	15254	15405	31155	31155					-0.09679304039013914
VTYFLPEVM	9	Unmodified	_VTYFLPEVM_					0	0	0			REV__ENSG00000233412|ENST00000641450|OR5H15	REV__ENSG00000233412|ENST00000641450|OR5H15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.283203125	2	549.780636	1097.54672	0.48708	0.00026779	0.64755	0.00035601	1.1346	0.0006238	549.781026549161	94.307	0.65188	94.307	94.063	94.715	0					80	29	4	0	0	0	0.26684	1	23780	23780		10.824	0	1	345330	+		23059	11040	15255	15406	31156	31156					0.001847491368152987
VTYPLPFEF	9	Unmodified	_VTYPLPFEF_					0	0	0		nc|ENSG00000124532|Q9HD23-2|MRS2;ENSG00000124532|ENST00000378386|MRS2;nc|ENSG00000124532|Q9HD23-4|MRS2;ENST00000483634.1_1_6:24408642-24418827:+|nuORF	nc|ENSG00000124532|Q9HD23-2|MRS2	nc|ENSG00000124532|Q9HD23-2|MRS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.3070678710938	2	556.786776	1111.559	0.53007	0.00029513	-3.8515	-0.0021445	-3.3214	-0.0018493	556.7857127144181	82.905	0.27877	82.926	82.764	83.043	0.021751					18	9	3	0	0	0	0.25174	1	20138	20138		7.2892	0.56607	1	83949			23060	2258	15256	15407	31157	31157					0.007681088715116857
VTYPLPFEF	9	Unmodified	_VTYPLPFEF_					0	0	0		nc|ENSG00000124532|Q9HD23-2|MRS2;ENSG00000124532|ENST00000378386|MRS2;nc|ENSG00000124532|Q9HD23-4|MRS2;ENST00000483634.1_1_6:24408642-24418827:+|nuORF	nc|ENSG00000124532|Q9HD23-2|MRS2	nc|ENSG00000124532|Q9HD23-2|MRS2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	556.786776	1111.559	0.56633	0.00031532	-3.3119	-0.001844	-2.7456	-0.0015287	556.7849655308795	82.905	0.26583	82.905	82.757	83.023	0	-0.010879	0.00023734	NaN	7.2892	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70404			23061	2258	15256	15407							0.007681088715116857
VTYPPPLTL	9	Unmodified	_VTYPPPLTL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7897644042969	2	500.789318	999.564084	0.37075	0.00018567	1.0205	0.00051104	1.3912	0.0006967	500.7893486737331	87.508	0.56384	87.508	87.291	87.855	0					62	20	4	0	0	0	0.12809	1	21770	21770		26.884	0	1	429930			23062	817	15257	15408	31158	31158					0.06428412734146605
VTYPPPLTL	9	Unmodified	_VTYPPPLTL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.1737060546875	2	500.789318	999.564084	-0.55602	-0.00027845	-3.4274	-0.0017164	-3.9834	-0.0019948	500.78747227973935	41.986	0.50422	41.986	41.829	42.333	0					31	17	3	0	0	0	0.25875	1	7912	7912		1.8442	0	1	80136			23063	817	15257	15408	31159	31159					0.06428412734146605
VTYPPPLTL	9	Unmodified	_VTYPPPLTL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.78973388671875	2	500.789318	999.564084	0.23303	0.0001167	0.20488	0.0001026	0.43791	0.0002193	500.78948583818254	87.447	0.56458	87.474	87.256	87.821	0.027573					44	21	3	0	0	0	0.12809	1	21563	21563		26.884	0	1	349580			23064	817	15257	15408	31160	31160					0.06428412734146605
VTYSSVGHSL	10	Unmodified	_VTYSSVGHSL_					0	0	0			REV__ENSG00000155719|ENST00000646100|OTOA	REV__ENSG00000155719|ENST00000646100|OTOA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2673950195312	2	525.266739	1048.51892	-0.048032	-2.523E-05	0.41827	0.00021971	0.37024	0.00019448	525.2669709171769	45.943	0.46404	46.028	45.811	46.275	0.085621					40	17	3	0	0	0	0.44246	1	9010	9010		6.2058	0	1	237840	+		23065	9734	15258	15409	31161	31161					-0.0033943779901619564
VTYTVPKIA	9	Unmodified	_VTYTVPKIA_					0	0	0			REV__nc|ENSG00000141568|Q01167-2|FOXK2	REV__nc|ENSG00000141568|Q01167-2|FOXK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2948303222656	2	496.294768	990.574983	0.52728	0.00026169	-0.39581	-0.00019644	0.13148	6.525E-05	496.29448350561455	77.552	0.38013	77.586	77.442	77.822	0.034485					25	12	3	0	0	0	0.32112	1	18587	18587		3.9444	0.3479	1	148190	+		23066	9409	15259	15410	31162	31162					0.07931815108429419
VTYVELLPL	9	Unmodified	_VTYVELLPL_					0	0	0			REV__ZNF292|p.L151*|1|0.33|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant	REV__ZNF292|p.L151*|1|0.33|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.8107299804688	2	523.810251	1045.60595	0.19934	0.00010442	0.18731	9.8114E-05	0.38665	0.00020253	523.8101828377528	95.844	0.38439	95.883	95.687	96.071	0.038872					25	17	2	0	0	0	0.21398	1	24135	24135		16.942	0	1	110990	+		23067	10786	15260	15411	31163	31163					0.0849696842267349
VTYVELLPL	9	Unmodified	_VTYVELLPL_					0	0	0			REV__ZNF292|p.L151*|1|0.33|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant	REV__ZNF292|p.L151*|1|0.33|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038330078125	2	523.810251	1045.60595	0.19934	0.00010442	0.18731	9.8114E-05	0.38665	0.00020253	523.8101828377528	95.844	0.38439	95.883	95.687	96.071	0.038872					25	17	2	0	0	0	0.2298	1	24099	24099		16.942	0	1	110990	+		23068	10786	15260	15411	31164	31164					0.0849696842267349
VTYVFLFVL	9	Unmodified	_VTYVFLFVL_					0	0	0			REV__ENSG00000279761|ENST00000623930|OR5D13	REV__ENSG00000279761|ENST00000623930|OR5D13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2767333984375	2	550.823161	1099.63177	0.37465	0.00020637	0.38828	0.00021387	0.76293	0.00042024	550.8235506151759	89.292	0.23773	89.324	89.117	89.355	0.032257					11	8	2	0	0	0	0.25875	1	22099	22099		1.8442	0	1	74842	+		23069	11150	15261	15412	31165	31165					0.0859386266497495
VVAAAPLLVL	10	Unmodified	_VVAAAPLLVL_					0	0	0			REV__ENSG00000205116|ENST00000378821|TMEM88B	REV__ENSG00000205116|ENST00000378821|TMEM88B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.32305908203125	2	483.323328	964.632104	0.094559	4.5702E-05	-0.33342	-0.00016115	-0.23886	-0.00011545	483.3232487558462	94.105	0.47935	94.143	94.043	94.523	0.038086					29	19	2	0	0	0	0.43343	1	23647	23647		7.9102	0	1	94246	+		23070	10968	15262	15413	31166	31166					0.1483728238479216
VVAMKKIRL	9	Unmodified	_VVAMKKIRL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3477172851562	2	529.349354	1056.68416	0.31017	0.00016419	-1.0581	-0.0005601	-0.74792	-0.00039591	529.3479942508549	109.44	0.41723	109.46	109.24	109.66	0.019402					133	46	4	0	0	0	0.3182	1	28010	28010		4.3292	0	1	1045200			23071	4386	15263	15414	31167	31167					0.15808122526891566
VVAPPGVVVSR	11	Unmodified	_VVAPPGVVVSR_					0	0	0		ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5	ENST00000491144.5_1_3:183853173-183855624:+|nuORF	ENST00000491144.5_1_3:183853173-183855624:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3319091796875	2	540.332216	1078.64988	-0.17914	-9.6792E-05	0.088023	4.7562E-05	-0.091112	-4.9231E-05	540.3321874661891	45.323	0.37748	45.323	45.126	45.503	0					20	12	2	0	0	0	0.38315	1	8888	8888		8.1555	0	1	82150			23072	3237	15264	15415	31168	31168					0.11369997639667417
VVAPPGVVVSR	11	Unmodified	_VVAPPGVVVSR_					0	0	0		ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5	ENST00000491144.5_1_3:183853173-183855624:+|nuORF	ENST00000491144.5_1_3:183853173-183855624:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.33251953125	2	540.332216	1078.64988	0.18208	9.8384E-05	-0.016499	-8.9147E-06	0.16558	8.9469E-05	540.3320287406108	45.243	0.40308	45.331	45.148	45.551	0.08754					25	15	2	0	0	0	0.36299	1	8739	8739		10.8	2.644	1	64274			23073	3237	15264	15415	31169	31169					0.11369997639667417
VVCFHSQF	8	Unmodified	_VVCFHSQF_					0	0	0			REV__ENST00000493342.1_1_X:24745055-24752029:+|nuORF	REV__ENST00000493342.1_1_X:24745055-24752029:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7286376953125	2	483.728738	965.442923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.045	1	69.045	68.545	69.545	0								0	0	0	0.38822	1	16115	16115		5.2307	0	1		+		23074	8439	15265	15416	31170	31170					-0.041181131801636184
VVDHPALAF	9	Unmodified	_VVDHPALAF_					0	0	0		ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7647399902344	2	484.763635	967.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.418	1	63.418	62.918	63.918	0								0	0	0	0.23452	1	14402	14402		12.532	0	1				23075	5279	15266	15417	31171	31171					0.027660887600859496
VVDHPALAF	9	Unmodified	_VVDHPALAF_					0	0	0		ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.7635192871094	2	484.763635	967.512717	0.15246	7.3908E-05	-0.16052	-7.7816E-05	-0.0080623	-3.9083E-06	484.7634241437961	63.546	0.68501	63.617	63.144	63.829	0.071018					32	26	2	0	0	0	0.25209	1	14223	14223		12.532	0.89125	1	89003			23076	5279	15266	15417	31172	31172					0.027660887600859496
VVDPNDPQM	9	Oxidation (M)	_VVDPNDPQM(Oxidation (M))_		VVDPNDPQM(1)		VVDPNDPQM(44)	0	0	1		ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7291259765625	2	515.729132	1029.44371	-0.054995	-2.8363E-05	0.045265	2.3344E-05	-0.0097306	-5.0183E-06	515.729179113613	31.286	0.67056	31.286	31.101	31.772	0					67	31	3	0	0	0	0.048027	1	4700	4700		43.772	36.483	1	208870			23077	3479	15267	15418	31173	31173		220			-0.0698336332177405
VVDPNDPQM	9	Unmodified	_VVDPNDPQM_					0	0	0		ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7303771972656	2	507.731674	1013.4488	-0.23403	-0.00011883	-1.889	-0.00095909	-2.123	-0.0010779	507.7306713241784	42.593	0.59951	42.682	42.492	43.092	0.089764					34	22	2	0	0	0	0.28919	1	7987	7987		8.1555	2.4237	1	89992			23078	3479	15267	15419	31174	31174					-0.05739059459165219
VVDRGTEFE	9	Unmodified	_VVDRGTEFE_					0	0	0		nc|ENSG00000152689|Q8IV61-2|RASGRP3;ENSG00000152689|ENST00000403687|RASGRP3	nc|ENSG00000152689|Q8IV61-2|RASGRP3	nc|ENSG00000152689|Q8IV61-2|RASGRP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.80810546875	2	526.256371	1050.49819	-0.14472	-7.6162E-05	-0.11051	-5.8158E-05	-0.25524	-0.00013432	526.2563230437256	31.27	0.36778	31.27	31.101	31.469	0					30	18	2	0	0	0	0.25579	1	4692	4692		4.3292	0	1	29441			23079	3504	15268	15420	31175	31175					-0.02504028178691442
VVDTHPHEIT	10	Unmodified	_VVDTHPHEIT_					0	0	0			REV__ENST00000475094.1_1_2:135676424-135700249:+|nuORF	REV__ENST00000475094.1_1_2:135676424-135700249:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2722778320312	2	574.290745	1146.56694	0.27696	0.00015905	-2.1412	-0.0012297	-1.8642	-0.0010706	574.2892301887814	48.141	0.17271	48.141	47.986	48.159	0					6	5	2	0	0	0	0.45627	1	9754	9754		3.5965	0	1	21170	+		23080	7752	15269	15421	31176	31176					-0.00048363879000135057
VVDTHPHEIT	10	Unmodified	_VVDTHPHEIT_					0	0	0			REV__ENST00000475094.1_1_2:135676424-135700249:+|nuORF	REV__ENST00000475094.1_1_2:135676424-135700249:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	574.290745	1146.56694	0.27696	0.00015905	-2.1412	-0.0012297	-1.8642	-0.0010706	574.2892301887814	48.141	0.17271	48.141	47.986	48.159	0	0	0	NaN	3.5965	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21170	+		23081	7752	15269	15421							-0.00048363879000135057
VVEPYNPML	9	Unmodified	_VVEPYNPML_					0	0	0		ENST00000405796.1_1_6:90011978-90012113:+|nuORF	ENST00000405796.1_1_6:90011978-90012113:+|nuORF	ENST00000405796.1_1_6:90011978-90012113:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.270751953125	2	531.270435	1060.52632	0.52035	0.00027645	-0.33682	-0.00017894	0.18353	9.7504E-05	531.270364518491	84.292	1.1523	84.314	83.723	84.876	0.021744					120	64	3	0	0	0	0.30005	1	20761	20761		6.7232	1.4263	1	3754600			23082	6377	15270	15422	31177	31177					-0.0015242152298924339
VVFILKMK	8	Unmodified	_VVFILKMK_					0	0	0		ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.314208984375	2	489.314449	976.614345	0.10963	5.3643E-05	-0.13929	-6.8156E-05	-0.02966	-1.4513E-05	489.31434378689283	90.034	0.51487	90.034	89.716	90.231	0					38	21	2	0	0	0	0.54081	1	22509	22509		0.79363	0	1	766540			23083	4829	15271	15423	31178	31178					0.1251024385828714
VVFMVLALV	9	Unmodified	_VVFMVLALV_					0	0	0		ENTPD8|p.V483Pfs*36|1|0.29|ENSG00000188833|chr9:137434946-137434955|CAGCCCCCAC/-|frameshift_variant;nc|ENSG00000188833|Q5MY95-2|ENTPD8;ENSG00000188833|ENST00000371506|ENTPD8	ENTPD8|p.V483Pfs*36|1|0.29|ENSG00000188833|chr9:137434946-137434955|CAGCCCCCAC/-|frameshift_variant	ENTPD8|p.V483Pfs*36|1|0.29|ENSG00000188833|chr9:137434946-137434955|CAGCCCCCAC/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.80615234375	2	495.806457	989.598361	0.69143	0.00034282	-0.60206	-0.00029851	0.089368	4.4309E-05	495.80591902748114	85.57	0.6239	85.595	85.358	85.982	0.025177					42	24	3	0	0	0	0.31136	1	21010	21010		5.2307	0	1	235950			23084	5176	15272	15424	31179	31179					0.1031453762137744
VVFQQERD	8	Unmodified	_VVFQQERD_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7586975097656	2	510.759081	1019.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.238	1	23.238	22.738	23.738	0								0	0	0	0.38822	1	2353	2353		0.79363	0	1				23085	1219	15273	15425	31180	31180					-0.005363045962440083
VVFWFLIGW	9	Unmodified	_VVFWFLIGW_					0	0	0		ENSG00000151025|ENST00000376351|GPR158	ENSG00000151025|ENST00000376351|GPR158	ENSG00000151025|ENST00000376351|GPR158	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8232421875	2	583.823495	1165.63244	0.52385	0.00030584	-0.27201	-0.0001588	0.25185	0.00014703	583.8231849949974	74.306	1.0674	74.306	74.053	75.121	0					77	39	3	0	0	0	0.23437	1	17870	17870		14.582	0	1	498480			23086	3444	15274	15426	31181	31181					0.05624702104637436
VVGLILIFL	9	Unmodified	_VVGLILIFL_					0	0	0		tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.83489990234375	2	493.836071	985.65759	0.35784	0.00017672	-0.29561	-0.00014598	0.062232	3.0732E-05	493.83498139876036	112.02	0.56468	112.04	111.9	112.47	0.014595					119	69	3	0	0	0	0.34646	1	28557	28557		0.6015	0	1	1206900			23087	13537	15275	15427	31182	31182					0.1641875690722827
VVGLILIFL	9	Unmodified	_VVGLILIFL_					0	0	0		tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	493.836071	985.65759	0.053362	2.6352E-05	-1.7812	-0.00087964	-1.7279	-0.00085329	493.8350802284201	111.96	0.61916	111.96	111.87	112.49	0	-0.036363	-0.0002043	NaN	0.6015	109	70	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1357200			23088	13537	15275	15427							0.1641875690722827
VVGPPYYLL	9	Unmodified	_VVGPPYYLL_					0	0	0			REV__ENSG00000182631|ENST00000330120|RXFP3	REV__ENSG00000182631|ENST00000330120|RXFP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.63446044921875	2	510.791861	1019.56917	0.56406	0.00028812	-2.2564	-0.0011525	-1.6923	-0.00086442	510.791563363481	97.557	0.30643	97.557	97.461	97.767	0					17	13	2	0	0	0	0.24749	1	24802	24802		9.3474	1.4373	1	33378	+		23089	10571	15276	15428	31183	31183					0.06016716596764127
VVGPPYYLL	9	Unmodified	_VVGPPYYLL_					0	0	0			REV__ENSG00000182631|ENST00000330120|RXFP3	REV__ENSG00000182631|ENST00000330120|RXFP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.9688720703125	2	510.791861	1019.56917	0.56482	0.0002885	-1.0503	-0.0005365	-0.48551	-0.000248	510.7917712569293	97.667	0.37718	97.708	97.36	97.737	0.040855					27	19	2	0	0	0	0.24749	1	24673	24673		9.3474	0.75416	1	31482	+		23090	10571	15276	15428	31184	31184					0.06016716596764127
VVGSDVEL	8	Unmodified	_VVGSDVEL_					0	0	0		ENST00000508139.1_1_5:176518793-176520368:+|nuORF;nc|ENSG00000160867|P22455-2|FGFR4;ENSG00000160867|ENST00000292408|FGFR4	ENST00000508139.1_1_5:176518793-176520368:+|nuORF	ENST00000508139.1_1_5:176518793-176520368:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.21881103515625	2	409.218726	816.422899	0.25571	0.00010464	0.061154	2.5025E-05	0.31686	0.00012966	409.21873605676734	64.756	1.018	64.825	64.506	65.524	0.068916					49	38	3	0	0	0	0.20402	1	14676	14676		42.095	0	1	225050			23091	3782	15277	15429	31185	31185					0.007344143608520426
VVGTGFHSLF	10	Unmodified	_VVGTGFHSLF_					0	0	0			REV__nc|ENSG00000158019|Q9NXR7-4|BABAM2	REV__nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7418212890625	2	532.282192	1062.54983	-0.25041	-0.00013329	-0.21191	-0.00011279	-0.46232	-0.00024608	532.2820161068407	41.499	0.39297	41.588	41.451	41.844	0.089764					28	16	3	0	0	0	0.31616	1	7610	7610		10.074	0	1	80888	+		23092	9793	15278	15430	31186	31186					0.02105760305835247
VVHIGDSLDKL	11	Unmodified	_VVHIGDSLDKL_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2429809570312	2	598.337695	1194.66084	0.51258	0.0003067	2.5749	0.0015407	3.0875	0.0018474	598.3392218518036	55.088	0.35032	55.088	54.918	55.269	0					20	12	2	0	0	0	0.31062	1	11850	11850		4.897	0.36815	1	100310	+		23093	9233	15279	15431	31187	31187					0.0712935522326461
VVHIGDSLDKL	11	Unmodified	_VVHIGDSLDKL_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2432861328125	2	598.337695	1194.66084	0.48041	0.00028745	3.0219	0.0018081	3.5023	0.0020956	598.3390468160293	55.059	0.26057	55.124	54.955	55.216	0.065132					19	9	3	0	0	0	0.3104	1	11698	11698		7.1017	0.47135	1	121770	+		23094	9233	15279	15431	31188	31188					0.0712935522326461
VVHPGSEEP	9	Unmodified	_VVHPGSEEP_					0	0	0			REV__nc|ENSG00000142303|Q9H324|ADAMTS10	REV__nc|ENSG00000142303|Q9H324|ADAMTS10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	475.7323913574219	2	475.732532	949.45051	0.052977	2.5203E-05	0.11745	5.5875E-05	0.17043	8.1078E-05	475.7325459521391	37.854	0.87951	37.854	37.547	38.426	0					66	29	3	0	0	0	0.33704	1	6647	6647		1.8442	1.1539	1	133600	+		23095	9427	15280	15432	31189	31189					-0.02623682378907688
VVIADLSTDPT	11	Unmodified	_VVIADLSTDPT_					0	0	0		nc|ENSG00000132016|Q0VDD7-2|BRME1;ENSG00000132016|ENST00000586783|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8004760742188	2	565.800611	1129.58667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.349	1	27.349	26.849	27.849	0								0	0	0	0.34212	1	3521	3521		0	0	1				23096	2556	15281	15433	31190	31190					0.02705967341057658
VVIFICFV	8	Unmodified	_VVIFICFV_					0	0	0			REV__L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|6|1|sense	REV__L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|6|1|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.27215576171875	2	470.27225	938.529947	0.22246	0.00010462	-0.27995	-0.00013165	-0.05749	-2.7036E-05	470.271996472276	92.277	0.42433	92.314	92.128	92.552	0.03653					22	14	2	0	0	0	0.3576	1	23065	23065		0.79363	0	1	63390	+		23097	12696	15282	15434	31191	31191					0.058222930415240626
VVILGPVAD	9	Unmodified	_VVILGPVAD_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.76824951171875	2	441.768386	881.522219	0.38034	0.00016802	-0.53416	-0.00023597	-0.15382	-6.7953E-05	441.76815877078076	99.714	0.85995	99.756	99.479	100.34	0.042839					140	53	4	0	0	0	0.33356	1	25239	25239		2.3027	0	1	8065400			23098	1460	15283	15435	31192	31192					0.07671857045602337
VVINSVGAR	9	Unmodified	_VVINSVGAR_					0	0	0			REV__WARS2|p.A277V|1|0.18|ENSG00000116874|chr1:119033164-119033164|G/A|missense_variant	REV__WARS2|p.A277V|1|0.18|ENSG00000116874|chr1:119033164-119033164|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	458.24786376953125	2	457.774534	913.534515	0.1289	5.9008E-05	-0.013489	-6.1749E-06	0.11541	5.2834E-05	457.77449447639896	36.546	0.43662	36.628	36.434	36.87	0.081715					28	18	2	0	0	0	0.25875	1	6193	6193		1.8442	0	1	49898	+		23099	13332	15284	15436	31193	31193					0.07428893508665624
VVKKTKIS	8	Unmodified	_VVKKTKIS_					0	0	0		ENST00000540992.1_1_12:16666501-16667302:+|nuORF	ENST00000540992.1_1_12:16666501-16667302:+|nuORF	ENST00000540992.1_1_12:16666501-16667302:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	451.8046569824219	2	451.805303	901.596052	0.070229	3.173E-05	-0.71926	-0.00032497	-0.64903	-0.00029324	451.80490823163	112.4	0.95267	112.4	112.14	113.09	0					287	108	4	0	0	0	0.54199	1	28935	28935		0	0	1	5530800			23100	7062	15285	15437	31194	31194					0.14131825207925885
VVKKTKIS	8	Unmodified	_VVKKTKIS_					0	0	0		ENST00000540992.1_1_12:16666501-16667302:+|nuORF	ENST00000540992.1_1_12:16666501-16667302:+|nuORF	ENST00000540992.1_1_12:16666501-16667302:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.80474853515625	2	451.805303	901.596052	0.17361	7.844E-05	-0.64306	-0.00029054	-0.46944	-0.0002121	451.8048348750026	112.4	0.65504	112.42	112.21	112.87	0.014595					211	72	3	0	0	0	0.54199	1	28703	28703		0	0	1	4242900			23101	7062	15285	15437	31195	31195					0.14131825207925885
VVKLLTKSL	9	Unmodified	_VVKLLTKSL_					0	0	0			REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.84716796875	2	500.841885	999.669217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.13	1	115.14	114.64	115.64	0.013092								0	0	0	0.29525	1	29274	29274		0	0	1		+		23102	13132	15286	15438	31196	31196					0.1693695393054213
VVLCVFIF	8	Unmodified	_VVLCVFIF_					0	0	0		tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	470.2722473144531	2	470.27225	938.529947	-0.058433	-2.748E-05	-0.15218	-7.1564E-05	-0.21061	-9.9044E-05	470.27216484677285	89.469	0.47371	89.502	89.25	89.724	0.032257					27	17	2	0	0	0	0.54081	1	22197	22197		0.79363	0	1	85924			23103	13586	15287	15439	31197	31197					0.058222930415240626
VVLGLVSLK	9	Unmodified	_VVLGLVSLK_					0	0	0		nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF;ENSG00000189339|ENST00000617444|SLC35E2B	nc|ENSG00000215790|P0CK97-2|SLC35E2A	nc|ENSG00000215790|P0CK97-2|SLC35E2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	464.31402587890625	2	464.315503	926.616454	-0.008438	-3.9179E-06	-2.5334	-0.0011763	-2.5418	-0.0011802	464.31381001409557	109.49	0.25348	109.49	109.38	109.63	0					51	25	3	0	0	0	0.33704	1	28175	28175		1.8442	0	1	1777700			23104	5195	15288	15440	31198	31198					0.15020995867746478
VVLGRCAR	8	Unmodified	_VVLGRCAR_					0	0	0			REV__ENSG00000177646|ENST00000308982|ACAD9	REV__ENSG00000177646|ENST00000308982|ACAD9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2573547363281	2	437.257997	872.501441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.088	1	90.088	89.588	90.588	0								0	0	0	0.38822	1	22529	22529		2.3027	0	1		+		23105	10433	15289	15441	31199	31199					0.06008988184953523
VVLLPGSY	8	Unmodified	_VVLLPGSY_					0	0	0			REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF	REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.24993896484375	2	424.249829	846.485105	0.34379	0.00014585	0.2737	0.00011612	0.61748	0.00026197	424.2498215425304	99.711	1.0181	99.754	99.47	100.49	0.042839					152	61	3	0	0	0	0.53345	5	25284	25284;25308;25322;25364;25414		5.7604	0	1	8603300	+		23106	12169	15290	15442	31200;31201;31202;31203;31204	31200					0.055721854998637355
VVLLPGSY	8	Unmodified	_VVLLPGSY_					0	0	0			REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF	REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	424.2491455078125	2	424.249829	846.485105	0.34379	0.00014585	0.2737	0.00011612	0.61748	0.00026197	424.2498215425304	99.711	1.0181	99.754	99.47	100.49	0.042839					152	61	3	0	0	0	0.3576	1	25245	25245		5.7604	0	1	8603300	+		23107	12169	15290	15442	31205	31205					0.055721854998637355
VVLLTLLL	8	Unmodified	_VVLLTLLL_					0	0	0			REV__ENST00000412128.1_1_2:232577893-232577953:+|nuORF	REV__ENST00000412128.1_1_2:232577893-232577953:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.30059814453125	2	442.314972	882.615391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.5	1	109.52	109.02	110.02	0.019402								0	0	0	0.38822	1	28004	28004		0.79363	0	1		+		23108	11778	15291	15443	31206	31206					0.1693878149885677
VVLRDPTLF	9	Unmodified	_VVLRDPTLF_					0	0	0		ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.3117065429688	2	530.313492	1058.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.39	1	86.39	85.89	86.89	0								0	0	0	0.28527	1	21408	21408		2.0598	0	1				23109	2008	15292	15444	31207	31207					0.08546906374044738
VVLSIFSVI	9	Unmodified	_VVLSIFSVI_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.8076171875	2	488.807511	975.600469	0.16118	7.8784E-05	0.29928	0.00014629	0.46046	0.00022508	488.80758603579676	87.843	0.39488	87.873	87.686	88.081	0.030037					19	13	2	0	0	0	0.25209	1	21673	21673		12.532	0	1	76787			23110	3989	15293	15445	31208	31208					0.11169289630868207
VVLSIFSVI	9	Unmodified	_VVLSIFSVI_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	488.807511	975.600469	0.39175	0.00019149	0.11353	5.5494E-05	0.50527	0.00024698	488.8074628943367	87.842	0.29598	87.842	87.708	88.004	0	-0.015626	-0.00014384	NaN	12.532	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275410			23111	3989	15293	15445							0.11169289630868207
VVMDSRKVTE	10	Unmodified	_VVMDSRKVTE_					0	0	0		tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.3081665039062	2	582.308081	1162.60161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.913	1	29.913	29.413	30.413	0								0	0	0	0.34018	1	4271	4271		0	0	1				23112	13678	15294	15446	31209	31209					0.026811359374733
VVNLQYSEVQ	10	Unmodified	_VVNLQYSEVQ_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8081665039062	2	589.806228	1177.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.25	1	104.29	103.79	104.79	0.03791								0	0	0	0.33711	1	26650	26650		3.5965	0.60125	1				23113	2090	15295	15447	31210	31210					0.016207894352419316
VVNQPIDVT	9	Unmodified	_VVNQPIDVT_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7528991699219	2	492.771657	983.528761	0.41905	0.00020649	0.037071	1.8267E-05	0.45612	0.00022476	492.7716721057153	61.236	0.30297	61.236	61.086	61.389	0					17	10	2	0	0	0	0.25746	1	13697	13697		3.2813	0	1	98800			23114	1364	15296	15448	31211	31211					0.03633750206347486
VVNQPIDVT	9	Unmodified	_VVNQPIDVT_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.75360107421875	2	492.771657	983.528761	0.29491	0.00014532	0.11055	5.4477E-05	0.40546	0.0001998	492.77153126195606	61.125	0.38208	61.198	61.053	61.435	0.073421					15	12	2	0	0	0	0.25458	1	13540	13540		5.7319	0	1	64788			23115	1364	15296	15448	31212	31212					0.03633750206347486
VVPIGLYS	8	Unmodified	_VVPIGLYS_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.2491149902344	2	424.249829	846.485105	0.631	0.0002677	-0.4177	-0.00017721	0.2133	9.0494E-05	424.24967542704576	99.782	1.0284	99.782	99.433	100.46	0					155	56	4	0	0	0	0.53345	5	25404	25404;25455;25462;25496;25539		5.7604	0	1	8277200	+		23116	9230	15297	15449	31213;31214;31215;31216;31217	31213					0.05572185499852367
VVPIGLYS	8	Unmodified	_VVPIGLYS_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	424.24945068359375	2	424.249829	846.485105	0.631	0.0002677	-0.4177	-0.00017721	0.2133	9.0494E-05	424.24967542704576	99.782	1.0284	99.782	99.433	100.46	0					155	56	4	0	0	0	0.3576	1	25581	25581		0.79363	0	1	8277200	+		23117	9230	15297	15449	31218	31218					0.05572185499852367
VVPPDYAL	8	Unmodified	_VVPPDYAL_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2396240234375	2	437.239461	872.46437	0.42918	0.00018765	-0.29458	-0.0001288	0.1346	5.8852E-05	437.239216802499	78.014	1.0966	78.014	77.555	78.651	0					85	37	3	0	0	0	0.52502	1	19001	19001		9.3474	0	1	287200	+		23118	9476	15298	15450	31219	31219					0.02303595120179125
VVPRRVLL	8	Unmodified	_VVPRRVLL_					0	0	0		ENST00000535977.5_1_16:678431-678971:+|nuORF	ENST00000535977.5_1_16:678431-678971:+|nuORF	ENST00000535977.5_1_16:678431-678971:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.3265075683594	2	476.326737	950.63892	-0.31185	-0.00014854	0.10438	4.9721E-05	-0.20747	-9.8822E-05	476.3267195281555	113.24	0.48581	113.24	113.19	113.68	0					104	71	2	0	0	0	0.54199	3	29011	29011;29034;29058		0	0	1	131690			23119	7044	15299	15451	31220;31221;31222	31220					0.1616264005605217
VVPRRVLL	8	Unmodified	_VVPRRVLL_					0	0	0		ENST00000535977.5_1_16:678431-678971:+|nuORF	ENST00000535977.5_1_16:678431-678971:+|nuORF	ENST00000535977.5_1_16:678431-678971:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.3270568847656	2	476.326737	950.63892	-0.0039696	-1.8908E-06	0.41103	0.00019578	0.40706	0.00019389	476.3267520639898	112.22	1.6309	112.23	111.98	113.62	0.014595					338	205	4	0	0	0	0.54199	2	28847	28847;28889		0	0	1	4447800			23120	7044	15299	15451	31223;31224	31223					0.1616264005605217
VVPSGGFFPTI	11	Unmodified	_VVPSGGFFPTI_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8055419921875	2	560.8055	1119.59645	0.5035	0.00028236	0.38221	0.00021435	0.88571	0.00049671	560.805259254557	83.237	0.4414	83.237	82.9	83.341	0					29	14	3	0	0	0	0.091297	2	20422	20422;20470		47.594	26.057	1	298460			23121	4232	15300	15452	31225;31226	31225					0.04143200137150416
VVPSGGFFPTI	11	Unmodified	_VVPSGGFFPTI_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.805419921875	2	560.8055	1119.59645	0.39712	0.00022271	-0.074095	-4.1553E-05	0.32303	0.00018115	560.8051382673303	83.217	0.48378	83.239	82.904	83.387	0.021751					38	16	3	0	0	0	0.033776	2	20285	20231;20285		61.602	33.973	1	227070			23122	4232	15300	15452	31227;31228	31228					0.04143200137150416
VVPVPLRTGD	10	Unmodified	_VVPVPLRTGD_					0	0	0			REV__nc|ENSG00000110171|O75382-4|TRIM3	REV__nc|ENSG00000110171|O75382-4|TRIM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.8084106445312	2	526.808574	1051.60259	-0.1497	-7.8863E-05	0.13052	6.8759E-05	-0.019181	-1.0105E-05	526.8085505162055	30.986	0.86513	31.06	30.868	31.733	0.073782					98	42	4	0	0	0	0.4753	1	4566	4566		0	0	1	251840	+		23123	8662	15301	15453	31229	31229					0.0788571836869778
VVPYQADLL	9	Unmodified	_VVPYQADLL_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.75030517578125	2	509.2844	1016.55425	0.327	0.00016654	-0.028937	-1.4737E-05	0.29807	0.0001518	509.2842746571201	76.183	0.9579	76.183	75.937	76.895	0					119	46	3	0	0	0	0.25209	1	18225	18225		12.532	0.89125	1	3436600	+		23124	10139	15302	15454	31230	31230					0.04663224728756177
VVQEEKKKL	9	Unmodified	_VVQEEKKKL_					0	0	0		TBC1D2B|p.I268V|1|0.12|ENSG00000167202|chr15:78030052-78030052|T/C|missense_variant	TBC1D2B|p.I268V|1|0.12|ENSG00000167202|chr15:78030052-78030052|T/C|missense_variant	TBC1D2B|p.I268V|1|0.12|ENSG00000167202|chr15:78030052-78030052|T/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8374633789062	2	550.837331	1099.66011	0.15961	8.7917E-05	-0.024353	-1.3415E-05	0.13525	7.4502E-05	550.8371900243029	22.853	0.49033	22.955	22.793	23.283	0.10178					106	47	4	0	0	0	0.32112	1	2111	2111		3.9444	0	1	116970			23125	13426	15303	15455	31231	31231					0.11426560574227551
VVQESPSPFE	10	Unmodified	_VVQESPSPFE_					0	0	0		nc|ENSG00000010932|Q01740-2|FMO1;ENSG00000010932|ENST00000617670|FMO1	nc|ENSG00000010932|Q01740-2|FMO1	nc|ENSG00000010932|Q01740-2|FMO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.775390625	2	559.771854	1117.52915	0.35305	0.00019762	-4.2579	-0.0023834	-3.9048	-0.0021858	559.7669013187214	56.098	0.54647	56.164	55.948	56.494	0.066452					53	19	4	0	0	0	0.42335	1	12044	12044		9.3831	1.473	1	436560			23126	418	15304	15456	31232	31232					-0.024908748644747902
VVQEVRVSD	9	Unmodified	_VVQEVRVSD_					0	0	0			REV__ENSG00000109321|ENST00000395748|AREG	REV__ENSG00000109321|ENST00000395748|AREG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7616577148438	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.382	1	27.382	26.882	27.882	0								0	0	0	0.26747	1	3531	3531		5.7319	2.1354	1		+		23127	8639	15305	15457	31233	31233					0.03188251092274186
VVQKLQQFP	9	Unmodified	_VVQKLQQFP_					0	0	0			REV__ENST00000477540.1_1_17:21215348-21217539:+|nuORF	REV__ENST00000477540.1_1_17:21215348-21217539:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.8187255859375	2	543.818941	1085.62333	0.19496	0.00010603	0.10766	5.8547E-05	0.30262	0.00016457	543.8188824492773	35.472	0.49362	35.551	35.382	35.876	0.078827					39	17	3	0	0	0	0.33704	1	5852	5852		1.8442	0	1	96753	+		23128	8014	15306	15458	31234	31234					0.08394308748324875
VVQRAECRP	9	Unmodified	_VVQRAECRP_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.281494140625	2	529.2822	1056.54985	-0.38342	-0.00020294	-0.10686	-5.656E-05	-0.49029	-0.0002595	529.7837967092261	15.753	0.17283	15.753	15.664	15.837	0					30	21	2	0	0	0	0.35102	1	608	608		0	0	1	11163			23129	5152	15307	15459	31235	31235					0.023834370341774047
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.263916015625	2	457.264333	912.514114	0.43652	0.0001996	-0.24791	-0.00011336	0.18861	8.6244E-05	457.2641145547303	76.292	2.7408	76.292	76.041	78.782	0					250	108	3	0	0	0	0.53494	2	18616	18616;19054		4.756	0	1	989850			23130	7067	15308	15460	31236;31237	31236					0.054357228488470355
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.26446533203125	2	457.264333	912.514114	0.30981	0.00014166	-0.038822	-1.7752E-05	0.27098	0.00012391	457.2641738472786	74.492	1.608	74.541	74.016	75.624	0.048546					111	58	3	0	0	0	0.53494	2	17577	17577;17687		4.756	0	1	216580			23131	7067	15308	15460	31238;31239	31238					0.054357228488470355
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.26422119140625	2	457.264333	912.514114	0.29326	0.0001341	-0.11554	-5.2832E-05	0.17772	8.1263E-05	457.2641702864376	76.289	2.8255	76.328	76.001	78.827	0.03923					199	113	3	0	0	0	0.53494	3	18678	18678;18769;18816		4.756	0	1	1082900			23132	7067	15308	15460	31240;31241;31242	31240					0.054357228488470355
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.2926025390625	2	457.264333	912.514114	0.26441	0.0001209	-0.078873	-3.6066E-05	0.18553	8.4837E-05	457.2642246510247	79.786	0.7422	79.812	79.388	80.131	0.026436					43	26	2	0	0	0	0.53494	1	19191	19191		4.756	0	1	169820			23133	7067	15308	15460	31243	31243					0.054357228488470355
VVRKKLGVK	9	Unmodified	_VVRKKLGVK_					0	0	0			REV__ZFHX4|p.E2641K|1|0.26|ENSG00000091656|chr8:76854842-76854842|G/A|missense_variant	REV__ZFHX4|p.E2641K|1|0.26|ENSG00000091656|chr8:76854842-76854842|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.8602294921875	2	513.860944	1025.70733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.939	1	19.939	19.439	20.439	0								0	0	0	0.29525	1	1474	1474		0	0	1		+		23134	13340	15309	15461	31244	31244					0.19550884635873444
VVRKLLVQL	9	Unmodified	_VVRKLLVQL_					0	0	0		ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.8333740234375	2	534.368601	1066.72265	0.4856	0.00025949	0.027207	1.4538E-05	0.51281	0.00027403	534.3685498474313	109.2	0.19659	109.22	109.09	109.28	0.019402					35	26	2	0	0	0	0.25981	1	27926	27926		0	0	1	1224200			23135	4641	15310	15462	31245	31245					0.19195751433085206
VVRLRPKR	8	Unmodified	_VVRLRPKR_					0	0	0			REV__ENST00000596341.5_1_19:58986839-58987022:+|nuORF	REV__ENST00000596341.5_1_19:58986839-58987022:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.759765625	2	512.348535	1022.68252	0.40987	0.00020999	-1.1298	-0.00057886	-0.71996	-0.00036887	512.3478437937289	100.72	0.40518	100.72	100.5	100.91	0					54	24	3	0	0	0	0.3576	1	25706	25706		0	0	1	204470	+		23136	12610	15311	15463	31246	31246					0.17208249553175392
VVRLRPKR	8	Unmodified	_VVRLRPKR_					0	0	0			REV__ENST00000596341.5_1_19:58986839-58987022:+|nuORF	REV__ENST00000596341.5_1_19:58986839-58987022:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	512.348535	1022.68252	0.4831	0.00024751	-1.4311	-0.00073322	-0.948	-0.00048571	512.3476773042971	100.66	0.46239	100.7	100.52	100.99	0.042839	-0.01095	-0.00014829	NaN	0	50	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184120	+		23137	12610	15311	15463							0.17208249553175392
VVRLVVHGIC	10	Unmodified	_VVRLVVHGIC_					0	0	0			REV__ENST00000238647.4_1_14:77493146-77493245:-|nuORF	REV__ENST00000238647.4_1_14:77493146-77493245:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8425903320312	2	547.828786	1093.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.019	1	12.019	11.519	12.519	0								0	0	0	0.34018	1	4	4		0	0	1		+		23138	11197	15312	15464	31247	31247					0.09994361487451897
VVRNKIKI	8	Unmodified	_VVRNKIKI_					0	0	0			REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.3304748535156	2	485.332019	968.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.07	1	116.07	115.57	116.57	0								0	0	0	0.38822	1	29576	29576		0	0	1		+		23139	13002	15313	15465	31248	31248					0.16390622710446223
VVRWGVPA	8	Unmodified	_VVRWGVPA_					0	0	0		ENST00000568983.5_1_16:89811164-89816202:-|nuORF	ENST00000568983.5_1_16:89811164-89816202:-|nuORF	ENST00000568983.5_1_16:89811164-89816202:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.2480163574219	2	442.261062	882.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.78	1	32.854	32.354	33.354	0.07378								0	0	0	0.38822	1	5002	5002		2.5775	0	1				23140	7189	15314	15466	31249	31249					0.061618296881420065
VVSIERPDLEK	11	Unmodified	_VVSIERPDLEK_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3624877929688	2	642.861534	1283.70852	0.18479	0.00011879	-0.93523	-0.00060123	-0.75044	-0.00048243	643.3622315572521	108.43	0.30131	108.46	108.39	108.69	0.022224					64	42	2	0	0	0	0.31032	1	27749	27749		7.609	2.3121	1	2850100			23141	283	15315	15467	31250	31250					0.0780100942347417
VVSLPSRTPP	10	Unmodified	_VVSLPSRTPP_					0	0	0			REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.80810546875	2	526.808574	1051.60259	-0.13945	-7.3462E-05	0.047981	2.5277E-05	-0.091466	-4.8185E-05	526.8084662683311	31.028	1.2294	31.028	30.799	32.028	0					117	56	4	0	0	0	0.45627	1	4692	4692		3.5965	0	1	263180	+		23142	9006	15316	15468	31251	31251					0.07885718368675043
VVSQCDLQAP	10	Unmodified	_VVSQCDLQAP_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2599487304688	2	530.260599	1058.50665	-0.018473	-9.7954E-06	-0.70996	-0.00037646	-0.72843	-0.00038626	530.2599785932204	26.072	0.12523	26.164	26.079	26.204	0.091507					12	10	2	0	0	0	0.4753	1	3030	3030		0	0	1	11612			23143	4596	15317	15469	31252	31252					-0.020267975337674216
VVSRESAPIKE	11	Unmodified	_VVSRESAPIKE_					0	0	0		ENSG00000214193|ENST00000453908|SH3D21;nc|ENSG00000214193|A4FU49-4|SH3D21;nc|ENSG00000214193|A4FU49-5|SH3D21;nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.8401489257812	2	607.840602	1213.66665	0.047907	2.912E-05	-0.37243	-0.00022638	-0.32453	-0.00019726	607.8403584552782	26.937	0.3105	26.937	26.797	27.108	0					34	21	2	0	0	0	0.41892	1	3398	3398		0	0	1	27723			23144	5565	15318	15470	31253	31253					0.06836453734922543
VVSRESAPIKE	11	Unmodified	_VVSRESAPIKE_					0	0	0		ENSG00000214193|ENST00000453908|SH3D21;nc|ENSG00000214193|A4FU49-4|SH3D21;nc|ENSG00000214193|A4FU49-5|SH3D21;nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.84033203125	2	607.840602	1213.66665	0.2144	0.00013032	-0.056599	-3.4403E-05	0.1578	9.5917E-05	607.8404498674046	26.88	0.26803	26.966	26.793	27.061	0.0867					31	17	2	0	0	0	0.41892	1	3242	3242		0	0	1	31721			23145	5565	15318	15470	31254	31254					0.06836453734922543
VVSSLSLF	8	Unmodified	_VVSSLSLF_					0	0	0		ENST00000608694.1_1_7:129250897-129251161:-|nuORF	ENST00000608694.1_1_7:129250897-129251161:-|nuORF	ENST00000608694.1_1_7:129250897-129251161:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	426.5621032714844	2	426.247286	850.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.901	1	84.924	84.424	85.424	0.023125								0	0	0	0.38822	1	20795	20795		2.5775	0	1				23146	7320	15319	15471	31255	31255					0.048798816372254805
VVSTHEQVL	9	Unmodified	_VVSTHEQVL_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000425692.6_1_17:16721458-16722262:-|nuORF;ENST00000417510.5_1_17:16721458-16722199:-|nuORF;LGALS3BP-KRT14|1|fusion	ENSG00000186847|ENST00000167586|KRT14;LGALS3BP-KRT14|1|fusion	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2763977050781	2	506.277106	1010.53966	-0.0073833	-3.738E-06	-0.51245	-0.00025944	-0.51983	-0.00026318	506.27675912522346	34.987	0.53835	34.987	34.796	35.334	0					35	18	3	0	0	0	0.24021	1	5770	5770		13.906	3.8321	1	86995		+	23147	214;7416	15320	15472	31256	31256					0.034811525806162535
VVSTHEQVL	9	Unmodified	_VVSTHEQVL_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000425692.6_1_17:16721458-16722262:-|nuORF;ENST00000417510.5_1_17:16721458-16722199:-|nuORF;LGALS3BP-KRT14|1|fusion	ENSG00000186847|ENST00000167586|KRT14;LGALS3BP-KRT14|1|fusion	ENSG00000186847|ENST00000167586|KRT14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2766418457031	2	506.277106	1010.53966	0.051925	2.6289E-05	-0.60134	-0.00030444	-0.54941	-0.00027816	506.2767255866375	34.892	0.39701	34.968	34.799	35.196	0.076244					36	15	3	0	0	0	0.27929	1	5631	5631		9.3831	2.66	1	70651		+	23148	214;7416	15320	15472	31257	31257					0.034811525806162535
VVTLILLLLL	10	Unmodified	_VVTLILLLLL_					0	0	0		nc|ENSG00000122223|Q9BZW8-4|CD244;nc|ENSG00000122223|Q9BZW8-3|CD244;ENSG00000122223|ENST00000368034|CD244;nc|ENSG00000122223|Q9BZW8|CD244	nc|ENSG00000122223|Q9BZW8-4|CD244	nc|ENSG00000122223|Q9BZW8-4|CD244	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.4008178710938	2	555.399036	1108.78352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.9	1	105.9	105.4	106.4	0								0	0	0	0.34018	1	27292	27292		0	0	1				23149	2176	15321	15473	31258	31258					0.23347843692681636
VVTPRRAT	8	Unmodified	_VVTPRRAT_					0	0	0			REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.2746887207031	2	450.274701	898.534849	0.64	0.00028818	-0.51997	-0.00023413	0.12003	5.4047E-05	450.27437897310676	87.927	1.0788	87.927	87.664	88.743	0					105	41	4	0	0	0	0.53894	1	21958	21958		2.0598	0	1	3244100	+		23150	12581	15322	15474	31259	31259					0.08152313228504227
VVTPRRAT	8	Unmodified	_VVTPRRAT_					0	0	0			REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	450.2746887207031	2	450.274701	898.534849	0.19311	8.6952E-05	-0.14343	-6.4581E-05	0.049684	2.2372E-05	450.2745739117329	87.899	1.0944	87.929	87.582	88.677	0.030037					115	41	5	0	0	0	0.53894	1	21799	21799		2.0598	0	1	2955000	+		23151	12581	15322	15474	31260	31260					0.08152313228504227
VVTYFLAIFKG	11	Unmodified	_VVTYFLAIFKG_					0	0	0			REV__nc|ENSG00000204701|O76001|OR2J3	REV__nc|ENSG00000204701|O76001|OR2J3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.36572265625	2	629.365724	1256.7169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.227	1	30.302	29.802	30.802	0.075403								0	0	0	0.34212	1	4242	4242		0	0	1		+		23152	10810	15323	15475	31261	31261					0.0988060813069751
VVTYFLAIFKG	11	Unmodified	_VVTYFLAIFKG_					0	0	0			REV__nc|ENSG00000204701|O76001|OR2J3	REV__nc|ENSG00000204701|O76001|OR2J3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.7003784179688	2	629.365724	1256.7169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.38	1	117.39	116.89	117.89	0.013062								0	0	0	0.34212	1	29684	29684		0	0	1		+		23153	10810	15323	15475	31262	31262					0.0988060813069751
VVVRLVVLVPL	11	Unmodified	_VVVRLVVLVPL_					0	0	0		ENST00000592274.1_1_19:3611803-3612905:+|nuORF;nc|ENSG00000226800|Q8N1I8|CACTIN-AS1	ENST00000592274.1_1_19:3611803-3612905:+|nuORF	ENST00000592274.1_1_19:3611803-3612905:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.4215698242188	2	603.420834	1204.82712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.228	1	54.293	53.793	54.793	0.065128								0	0	0	0.34212	1	11463	11463		0	0	1				23154	7267	15324	15476	31263	31263					0.23289453189818232
VVYEPLLSL	9	Unmodified	_VVYEPLLSL_					0	0	0			REV__ENSG00000121892|ENST00000303538|PDS5A	REV__ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3095703125	2	516.802426	1031.5903	0.59507	0.00030753	-0.079009	-4.0832E-05	0.51606	0.0002667	516.802269755216	97.439	0.43927	97.48	97.275	97.714	0.040855					37	22	3	0	0	0	0.20194	1	24631	24631		24.021	0	1	189020	+		23155	8258	15325	15477	31264	31264					0.07576681905629812
VVYGLTAIL	9	Unmodified	_VVYGLTAIL_					0	0	0		ENSG00000167332|ENST00000396950|OR51E2	ENSG00000167332|ENST00000396950|OR51E2	ENSG00000167332|ENST00000396950|OR51E2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.79205322265625	2	474.791861	947.569169	0.021085	1.0011E-05	-0.0069612	-3.3051E-06	0.014123	6.7057E-06	474.7917971701094	90.496	0.39494	90.496	90.413	90.808	0					18	14	2	0	0	0	0.17247	1	22673	22673		21.747	0	1	76508			23156	4207	15326	15478	31265	31265					0.09328716596746744
VVYGLTAIL	9	Unmodified	_VVYGLTAIL_					0	0	0		ENSG00000167332|ENST00000396950|OR51E2	ENSG00000167332|ENST00000396950|OR51E2	ENSG00000167332|ENST00000396950|OR51E2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7916259765625	2	474.791861	947.569169	-0.28072	-0.00013328	-0.042296	-2.0082E-05	-0.32301	-0.00015336	474.7918241162039	90.559	0.46626	90.593	90.329	90.796	0.034065					26	19	2	0	0	0	0.092418	2	22529	22477;22529		34.102	3.4659	1	147210			23157	4207	15326	15478	31266;31267	31267					0.09328716596746744
VVYGLTAIL	9	Unmodified	_VVYGLTAIL_					0	0	0		ENSG00000167332|ENST00000396950|OR51E2	ENSG00000167332|ENST00000396950|OR51E2	ENSG00000167332|ENST00000396950|OR51E2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.7918701171875	2	474.791861	947.569169	0.016633	7.8972E-06	0.24164	0.00011473	0.25827	0.00012262	474.7918393456675	91.677	0.7524	91.712	91.436	92.188	0.035446					56	26	3	0	0	0	0.22344	1	22927	22927		15.847	0	1	1071100			23158	4207	15326	15478	31268	31268					0.09328716596746744
VVYMVLILA	9	Unmodified	_VVYMVLILA_					0	0	0			REV__OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant	REV__OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.8126220703125	2	510.811739	1019.60893	0.40838	0.00020861	1.859	0.0009496	2.2674	0.0011582	510.8124583103374	85.847	0.46976	85.847	85.515	85.985	0					21	19	2	0	0	0	0.33356	1	21196	21196		2.3027	0	1	73924	+		23159	9584	15327	15479	31269	31269					0.09990520275835024
VVYMVLILA	9	Unmodified	_VVYMVLILA_					0	0	0			REV__OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant	REV__OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	510.811739	1019.60893	0.40838	0.00020861	1.859	0.0009496	2.2674	0.0011582	510.8124583103374	85.847	0.46976	85.847	85.515	85.985	0	0	0	NaN	2.3027	21	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73924	+		23160	9584	15327	15479							0.09990520275835024
VVYPIVDFP	9	Unmodified	_VVYPIVDFP_					0	0	0		nc|ENSG00000125046|Q9Y2M2-3|SSUH2;ENST00000413305.5_1_3:8661556-8676112:-|nuORF;nc|ENSG00000125046|Q9Y2M2-1|SSUH2;ENSG00000125046|ENST00000544814|SSUH2;ENST00000420394.5_1_3:8661556-8693727:-|nuORF	nc|ENSG00000125046|Q9Y2M2-3|SSUH2	nc|ENSG00000125046|Q9Y2M2-3|SSUH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2462158203125	2	524.789318	1047.56408	-0.22715	-0.00011921	-0.75916	-0.0003984	-0.98631	-0.00051761	524.7889568189008	25.301	0.42652	25.301	25.176	25.602	0					78	33	3	0	0	0	0.25845	1	2957	2957		2.0598	0.21551	1	67551			23161	2280	15328	15480	31270	31270					0.04220412734139245
VWADAEVTEPA	11	Unmodified	_VWADAEVTEPA_					0	0	0			REV__KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	REV__KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.8140258789062	2	594.282586	1186.55062	0.46591	0.00027688	3.9078	0.0023223	4.3737	0.0025992	594.285107582692	83.386	0.32842	83.386	83.251	83.58	0					15	10	2	0	0	0	0.30659	1	20457	20457		17.113	4.8722	1	88072	+		23162	10720	15329	15481	31271	31271					-0.035194898357758575
VWADAEVTEPA	11	Unmodified	_VWADAEVTEPA_					0	0	0			REV__KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	REV__KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.8140869140625	2	594.282586	1186.55062	0.19913	0.00011834	3.7352	0.0022198	3.9344	0.0023381	594.2851130711105	83.388	0.42131	83.41	83.194	83.615	0.021744					24	14	3	0	0	0	0.30908	1	20290	20290		16.149	7.9936	1	138630	+		23163	10720	15329	15481	31272	31272					-0.035194898357758575
VWAFFAVIF	9	Unmodified	_VWAFFAVIF_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2A|p.A643S|1|0.78|ENSG00000183454|chr16:9829503-9829503|C/A|missense_variant;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7506103515625	2	550.302396	1098.59024	0.77787	0.00042806	-2.7106	-0.0014917	-1.9328	-0.0010636	550.3000273416496	65.628	1.7061	65.628	65.165	66.871	0					228	63	5	0	0	0	0.20644	1	14976	14976		20.871	3.9289	1	1676400			23164	1472	15330	15482	31273	31273					0.044887266962632566
VWAFSFLTSL	10	Unmodified	_VWAFSFLTSL_					0	0	0		ENST00000548198.5_1_12:57999629-57999917:+|nuORF	ENST00000548198.5_1_12:57999629-57999917:+|nuORF	ENST00000548198.5_1_12:57999629-57999917:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.813325	1169.6121	0.75418	0.00044181	-0.34808	-0.00020391	0.40611	0.0002379	585.812921133246	103.66	0.2896	103.7	103.54	103.83	0.03791					49	29	2	0	0	0	0.44246	1	26516	26516		6.2058	0	1	109370			23165	7083	15331	15483	31274	31274					0.03407486654191416
VWCRWSES	8	Unmodified	_VWCRWSES_					0	0	0			REV__ENST00000359479.7_1_3:155572111-155572216:-|nuORF	REV__ENST00000359479.7_1_3:155572111-155572216:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2359619140625	2	526.734551	1051.45455	-0.15545	-8.1882E-05	0.47569	0.00025056	0.32024	0.00016868	526.7346117620153	29.487	0.31696	29.487	29.335	29.652	0					29	16	2	0	0	0	0.54097	1	4118	4118		0.69038	0	1	27355	+		23166	11529	15332	15484	31275	31275					-0.06911916156855114
VWEETIILL	9	Unmodified	_VWEETIILL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7843627929688	2	558.320983	1114.62741	0.48213	0.00026918	0.28444	0.00015881	0.76657	0.00042799	558.3213532103488	94.579	0.40862	94.579	94.371	94.779	0					41	16	3	0	0	0	0.10508	1	23918	23918		42.095	6.0504	1	145270			23167	531	15333	15485	31276	31276					0.0746835345139516
VWEETIILL	9	Unmodified	_VWEETIILL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7841796875	2	558.320983	1114.62741	0.48822	0.00027259	-0.010803	-6.0318E-06	0.47742	0.00026655	558.3209159579781	94.576	0.41832	94.614	94.4	94.818	0.038086					34	16	3	0	0	0	0.082308	1	23754	23754		48.346	12.302	1	318380			23168	531	15333	15485	31277	31277					0.0746835345139516
VWEYSSSI	8	Unmodified	_VWEYSSSI_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7455749511719	2	485.729458	969.444362	-0.04759	-2.3116E-05	1.6206	0.00078715	1.573	0.00076404	485.7302711121288	49.477	0.33854	49.477	49.34	49.679	0					18	11	2	0	0	0	0.3576	1	10158	10158		7.9102	0.62092	1	56763			23169	2862	15334	15486	31278	31278					-0.04158200610413587
VWEYSSSI	8	Unmodified	_VWEYSSSI_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.74554443359375	2	485.729458	969.444362	-0.081407	-3.9542E-05	1.5463	0.00075109	1.4649	0.00071154	485.73008162599695	49.426	0.29876	49.502	49.359	49.658	0.076603					16	10	2	0	0	0	0.50159	1	10004	10004		12.532	0.89125	1	46008			23170	2862	15334	15486	31279	31279					-0.04158200610413587
VWFIRMMRL	9	Unmodified	_VWFIRMMRL_					0	0	0			REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	417.548583984375	3	417.899951	1250.67802	0.57574	0.0002406	-1.4911	-0.00062311	-0.91531	-0.00038251	417.89911434500993	61.035	0.27729	61.035	60.885	61.162	0					10	9	2	0	0	0	0.25594	1	13649	13649		4.897	0	1	57781	+		23171	10241	15335	15487	31280	31280					0.06271281023737174
VWFNIGSVDTF	11	Unmodified	_VWFNIGSVDTF_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.81689453125	2	642.816596	1283.61864	0.53576	0.0003444	-0.015261	-9.8098E-06	0.5205	0.00033459	642.8163455589142	93.007	0.80552	93.007	92.793	93.599	0					80	31	4	0	0	0	8.2088E-09	3	23404	23404;23453;23505		171.46	138.68	1	575050			23172	3054	15336	15488	31281;31282;31283	31281					-0.01182620185113592
VWFNIGSVDTF	11	Unmodified	_VWFNIGSVDTF_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.816650390625	2	642.816596	1283.61864	0.44436	0.00028564	-0.067698	-4.3517E-05	0.37666	0.00024213	642.8163462623507	92.975	0.76875	93.013	92.837	93.606	0.037369					83	32	4	0	0	0	0.013498	3	23273	23225;23273;23319		124.95	102.29	1	552950			23173	3054	15336	15488	31284;31285;31286	31285					-0.01182620185113592
VWFPGGAF	8	Unmodified	_VWFPGGAF_					0	0	0		nc|ENSG00000159398|Q6NT32-3|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000172824|ENST00000648724|CES4A	nc|ENSG00000159398|Q6NT32-3|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.7214050292969	2	440.721239	879.427924	0.19641	8.6562E-05	0.11149	4.9138E-05	0.3079	0.0001357	440.7211490897725	58.373	2.4634	58.373	58.256	60.72	0					151	92	4	0	0	0	0.46808	7	13221	12924;12976;13027;13079;13160;13221;13311		17.087	17.087	1	1955500			23174	3727	15337	15489	31287;31288;31289;31290;31291;31292;31293	31292					-0.016612369858535203
VWFPGGAF	8	Unmodified	_VWFPGGAF_					0	0	0		nc|ENSG00000159398|Q6NT32-3|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000172824|ENST00000648724|CES4A	nc|ENSG00000159398|Q6NT32-3|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.5768127441406	2	440.721239	879.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.958	1	64.958	64.458	65.458	0								0	0	0	0.38822	1	14872	14872		11.114	1.767	1				23175	3727	15337	15489	31294	31294					-0.016612369858535203
VWFPGGAF	8	Unmodified	_VWFPGGAF_					0	0	0		nc|ENSG00000159398|Q6NT32-3|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000172824|ENST00000648724|CES4A	nc|ENSG00000159398|Q6NT32-3|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.2214660644531	2	440.721239	879.427924	0.50885	0.00022426	-0.82709	-0.00036452	-0.31824	-0.00014025	440.72082114837167	61.359	0.6687	61.359	60.749	61.418	0					30	23	2	0	0	0	0.3576	1	13614	13614		6.3541	6.3541	1	67841			23176	3727	15337	15489	31295	31295					-0.016612369858535203
VWFPGGAF	8	Unmodified	_VWFPGGAF_					0	0	0		nc|ENSG00000159398|Q6NT32-3|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000172824|ENST00000648724|CES4A	nc|ENSG00000159398|Q6NT32-3|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7207336425781	2	440.721239	879.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.757	1	59.829	59.329	60.329	0.072338								0	0	0	0.38822	1	13147	13147		11.114	1.767	1				23177	3727	15337	15489	31296	31296					-0.016612369858535203
VWFPGGAF	8	Unmodified	_VWFPGGAF_					0	0	0		nc|ENSG00000159398|Q6NT32-3|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000172824|ENST00000648724|CES4A	nc|ENSG00000159398|Q6NT32-3|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.7210998535156	2	440.721239	879.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.921	1	59.993	59.493	60.493	0.072338								0	0	0	0.38822	1	13197	13197		11.114	1.767	1				23178	3727	15337	15489	31297	31297					-0.016612369858535203
VWGHCSLP	8	Unmodified	_VWGHCSLP_					0	0	0			REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF	REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	449.716064453125	2	449.71563	897.416708	-0.008651	-3.8905E-06	1.8478	0.00083098	1.8391	0.00082709	449.71638567611245	29.343	0.46523	29.343	29.201	29.666	0					37	24	2	0	0	0	0.53817	1	4133	4133		2.5775	0	1	41657	+		23179	9172	15338	15490	31298	31298					-0.03610382351644148
VWGHCSLP	8	Unmodified	_VWGHCSLP_					0	0	0			REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF	REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	449.71563	897.416708	-0.008651	-3.8905E-06	1.8478	0.00083098	1.8391	0.00082709	449.71638567611245	29.343	0.46523	29.343	29.201	29.666	0	-0.0040114	-0.00024022	NaN	2.5775	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41657	+		23180	9172	15338	15490							-0.03610382351644148
VWGHCSLP	8	Unmodified	_VWGHCSLP_					0	0	0			REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF	REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	449.71563	897.416708	-0.21041	-9.4624E-05	2.3149	0.001041	2.1044	0.0009464	449.71659493582695	29.273	0.36262	29.351	29.186	29.548	0.078287	0.0040114	0.00017987	NaN	2.5775	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35177	+		23181	9172	15338	15490							-0.03610382351644148
VWGVPIPVF	9	Unmodified	_VWGVPIPVF_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.2940673828125	2	507.294571	1012.57459	0.37084	0.00018812	-0.73396	-0.00037234	-0.36313	-0.00018421	507.29389508264063	100.08	0.7131	100.08	99.9	100.61	0					70	37	3	0	0	0	0.18003	2	25553	25553;25606		20.871	12.961	1	139330			23182	718	15339	15491	31299;31300	31299					0.06880440179213565
VWIFIMESF	9	Unmodified	_VWIFIMESF_					0	0	0			REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2954711914062	2	586.296453	1170.57835	0.34017	0.00019944	-1.545	-0.0009058	-1.2048	-0.00070636	586.2953080688859	104.63	0.45643	104.63	104.42	104.88	0					95	43	3	0	0	0	0.1182	1	26933	26933		28.487	0.85804	1	247040	+		23183	12797	15340	15492	31301	31301					-0.00011258109225309454
VWKFLGLL	8	Unmodified	_VWKFLGLL_					0	0	0		ENSG00000232030|ENST00000416929|MAGEB6B	ENSG00000232030|ENST00000416929|MAGEB6B	ENSG00000232030|ENST00000416929|MAGEB6B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.3195495605469	2	488.304939	974.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.14	1	103.14	102.64	103.64	0								0	0	0	0.38822	1	26501	26501		2.8892	0	1				23184	5619	15341	15493	31302	31302					0.10701030558902858
VWLPASVLF	9	Unmodified	_VWLPASVLF_					0	0	0		nc|ENSG00000134490|Q24JQ0-2|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241;nc|ENSG00000134490|Q24JQ0-3|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.3103637695312	2	516.299853	1030.58515	0.56158	0.00028994	-0.46774	-0.00024149	0.093837	4.8448E-05	516.2994428938536	99.137	0.40147	99.137	98.926	99.328	0					64	30	3	0	0	0	0.1182	1	25259	25259		28.487	11.545	1	121110			23185	2673	15342	15494	31303	31303					0.07108422833653094
VWLPASVLF	9	Unmodified	_VWLPASVLF_					0	0	0		nc|ENSG00000134490|Q24JQ0-2|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241;nc|ENSG00000134490|Q24JQ0-3|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.3104248046875	2	516.299853	1030.58515	0.55448	0.00028628	-0.17087	-8.8222E-05	0.38361	0.00019806	516.299594542562	99.086	0.46043	99.129	98.908	99.369	0.042831					63	30	3	0	0	0	0.1182	1	25075	25075		28.487	11.545	1	132330			23186	2673	15342	15494	31304	31304					0.07108422833653094
VWNFCRYI	8	Unmodified	_VWNFCRYI_					0	0	0		ENST00000262741.9_2_1:46597685-46597748:-|nuORF	ENST00000262741.9_2_1:46597685-46597748:-|nuORF	ENST00000262741.9_2_1:46597685-46597748:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.30908203125	2	550.770937	1099.52732	0.17188	9.4664E-05	2.2428	0.0012352	2.4146	0.0013299	550.7722284142985	45.174	0.38876	45.261	45.061	45.449	0.08754					26	14	2	0	0	0	0.3576	1	8693	8693		2.5775	0.27475	1	87355			23187	5872	15343	15495	31305	31305					-0.01846162363426629
VWNFPIDVTF	10	Unmodified	_VWNFPIDVTF_					0	0	0		ENST00000575403.5_2_17:19241035-19261261:-|nuORF;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1;ENSG00000108641|ENST00000261499|B9D1	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.3162231445312	2	619.316232	1236.61791	0.00067259	4.1655E-07	0.24285	0.0001504	0.24353	0.00015082	619.316354438304	100.04	0.73367	100.04	99.859	100.59	0					83	39	4	0	0	0	0.012609	4	25573	25528;25573;25617;25667		74.2	52.663	1	372680			23188	1600	15344	15496	31306;31307;31308;31309	31307					0.009065851658533575
VWNFPIDVTF	10	Unmodified	_VWNFPIDVTF_					0	0	0		ENST00000575403.5_2_17:19241035-19261261:-|nuORF;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1;ENSG00000108641|ENST00000261499|B9D1	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3162841796875	2	619.316232	1236.61791	0.14914	9.2366E-05	0.36623	0.00022681	0.51538	0.00031918	619.31630183592	100	0.61534	100.04	99.872	100.49	0.042839					78	33	3	0	0	0	0.0016735	3	25398	25398;25444;25488		83.429	61.892	1	704930			23189	1600	15344	15496	31310;31311;31312	31310					0.009065851658533575
VWPAAQFVNF	10	Unmodified	_VWPAAQFVNF_					0	0	0		ENST00000533807.3_1_19:18304624-18306862:+|nuORF;nc|ENSG00000254858|Q567V2-2|MPV17L2;ENSG00000254858|ENST00000599612|MPV17L2	ENST00000533807.3_1_19:18304624-18306862:+|nuORF	ENST00000533807.3_1_19:18304624-18306862:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.34326171875	2	589.803291	1177.59203	0.43291	0.00025533	-0.75639	-0.00044612	-0.32348	-0.00019079	590.3035967209626	87.717	0.26877	87.747	87.582	87.851	0.030037					14	9	2	0	0	0	0.31532	1	21661	21661		13.042	4.2971	1	84586			23190	5696	15345	15497	31313	31313					0.010337357142361725
VWPGEGREL	9	Unmodified	_VWPGEGREL_					0	0	0			REV__ENSG00000189420|ENST00000338647|ZFP92	REV__ENSG00000189420|ENST00000338647|ZFP92	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7693481445312	2	521.769448	1041.52434	0.16901	8.8185E-05	0.013891	7.2479E-06	0.1829	9.5433E-05	521.769425196517	51.582	0.776	51.582	51.239	52.015	0					82	26	4	0	0	0	0.17247	1	10743	10743		21.747	0	1	2294600	+		23191	10796	15346	15498	31314	31314					0.005242857834218739
VWPKKGTAVFW	11	Unmodified	_VWPKKGTAVFW_					0	0	0		ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.58306884765625	3	440.248403	1317.72338	0.53679	0.00023632	-0.68842	-0.00030308	-0.15164	-6.6757E-05	440.2481147054074	56.039	1.0498	56.039	55.38	56.43	0					66	37	3	0	0	0	0.31056	1	12230	12230		6.6235	1.9075	1	178900			23192	2199	15347	15499	31315	31315					0.07722546082118242
VWPKKGTAVFW	11	Unmodified	_VWPKKGTAVFW_					0	0	0		ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.2480163574219	3	440.248403	1317.72338	0.19126	8.4202E-05	-0.11314	-4.9811E-05	0.078117	3.4391E-05	440.24829678515374	55.922	1.14	55.987	55.353	56.493	0.065128					66	42	2	0	0	0	0.34507	5	11922	11871;11922;11969;12023;12097		12.856	5.3789	1	188540			23193	2199	15347	15499	31316;31317;31318;31319;31320	31317					0.07722546082118242
VWQMMAPL	8	Unmodified	_VWQMMAPL_					0	0	0			REV__ENSG00000182836|ENST00000377801|PLCXD3	REV__ENSG00000182836|ENST00000377801|PLCXD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.241943359375	2	488.243166	974.47178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.35	1	29.428	28.928	29.928	0.078287								0	0	0	0.38822	1	3982	3982		0.79363	0	1		+		23194	10578	15348	15500	31321	31321					-0.016477118753982722
VWQRWTRLR	9	Unmodified	_VWQRWTRLR_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.9165344238281	3	434.251029	1299.73126	0.046941	2.0384E-05	0.16759	7.2777E-05	0.21453	9.3161E-05	434.25112255575397	59.574	0.58627	59.647	59.402	59.988	0.072338					33	22	2	0	0	0	0.25982	1	13094	13094		0.86438	0.087843	1	145850			23195	2508	15349	15501	31322	31322					0.0933811812226395
VWQRWTRLR	9	Unmodified	_VWQRWTRLR_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	434.251029	1299.73126	0.44975	0.0001953	-0.23007	-9.9907E-05	0.21968	9.5396E-05	434.2508744812427	59.733	0.75836	59.733	59.36	60.119	0	0.042935	-0.00018342	NaN	0.86438	41	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275390			23196	2508	15349	15501							0.0933811812226395
VWSENWSHAF	10	Unmodified	_VWSENWSHAF_					0	0	0			REV__nc|ENSG00000132824|Q13530-2|SERINC3	REV__nc|ENSG00000132824|Q13530-2|SERINC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.7830810546875	2	631.783087	1261.55162	0.012511	7.9045E-06	-0.3512	-0.00022188	-0.33869	-0.00021398	631.7830428988705	90.491	1.2203	90.525	90.087	91.307	0.034065					148	48	5	0	0	0	0.43771	1	22510	22510		7.1017	0.89594	1	1480500	+		23197	8703	15350	15502	31323	31323					-0.06869230676193183
VWSIWMTETL	10	Unmodified	_VWSIWMTETL_					0	0	0		TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant;TP53|p.I195Lfs*53|1|0.3|ENSG00000141510|chr17:7674949-7674950|-/AG|frameshift_variant;TP53|p.C176Afs*71|1|0.09|ENSG00000141510|chr17:7675086-7675086|A/-|frameshift_variant;TP53|p.G199Efs*48|1|0.77|ENSG00000141510|chr17:7674937-7674937|T/-|frameshift_variant;TP53|p.H178Tfs*69|1|0.53|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.N200Ifs*47|1|0.17|ENSG00000141510|chr17:7674932-7674932|T/-|frameshift_variant;TP53|p.D184Afs*62|1|0.68|ENSG00000141510|chr17:7675058-7675061|CTAT/-|frameshift_variant;TP53|p.V173Afs*72|1|0.09|ENSG00000141510|chr17:7675088-7675094|CGCCTCA/-|frameshift_variant;TP53|p.P191Qfs*51|1|0.69|ENSG00000141510|chr17:7674944-7674959|CGGATAAGATGCTGAG/-|frameshift_variant	TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant	TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.3140869140625	2	633.315374	1264.6162	0.2462	0.00015592	-2.4886	-0.0015761	-2.2424	-0.0014201	633.3139857859547	85.81	0.49415	85.81	85.631	86.125	0					29	20	2	0	0	0	0.38104	1	21264	21264		13.906	0.86358	1	206020			23198	13438	15351	15503	31324	31324					-0.005527919143787585
VWSTFSATL	9	Unmodified	_VWSTFSATL_					0	0	0			REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF	REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.26104736328125	2	506.260925	1010.5073	0.74159	0.00037544	-0.0090235	-4.5682E-06	0.73257	0.00037087	506.26084875308413	80.567	0.8279	80.567	80.228	81.056	0					44	28	2	0	0	0	0.29576	1	19673	19673		7.2892	0	1	149880	+		23199	12166	15352	15504	31325	31325					0.0024636517761109644
VWSTFSATL	9	Unmodified	_VWSTFSATL_					0	0	0			REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF	REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2605895996094	2	506.260925	1010.5073	0.31044	0.00015717	-0.47528	-0.00024062	-0.16484	-8.3452E-05	506.2603756681415	76.532	0.40328	76.571	76.313	76.716	0.03923					19	14	2	0	0	0	0.26684	1	18267	18267		10.824	3.5347	1	69631	+		23200	12166	15352	15504	31326	31326					0.0024636517761109644
VWSTFSATL	9	Unmodified	_VWSTFSATL_					0	0	0			REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF	REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2611083984375	2	506.260925	1010.5073	0.63243	0.00032017	0.078231	3.9606E-05	0.71066	0.00035978	506.2609030715433	80.534	0.57751	80.557	80.273	80.851	0.023605					40	20	3	0	0	0	0.29576	1	19503	19503		7.2892	0	1	196770	+		23201	12166	15352	15504	31327	31327					0.0024636517761109644
VWTAKQHFSF	10	Unmodified	_VWTAKQHFSF_					0	0	0		nc|ENSG00000292336|P46597|ASMT;ENSG00000196433|ENST00000381241|ASMT	nc|ENSG00000292336|P46597|ASMT	nc|ENSG00000292336|P46597|ASMT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.8831481933594	3	417.548741	1249.62439	0.057839	2.4151E-05	-0.15904	-6.6408E-05	-0.1012	-4.2257E-05	417.5486109686271	60.595	1.0075	60.669	60.427	61.435	0.073421					108	34	4	0	0	0	0.45313	1	13513	13513		4.1895	0	1	1828500			23202	5220	15353	15505	31328	31328					0.009565231172246058
VWTCGLLFLQ	10	Unmodified	_VWTCGLLFLQ_					0	0	0			REV__nc|ENSG00000123146|P48960-2|ADGRE5	REV__nc|ENSG00000123146|P48960-2|ADGRE5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2964477539062	2	590.315177	1178.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.75	1	104.75	104.25	105.25	0								0	0	0	0.33443	1	26965	26965		6.7232	0.99131	1		+		23203	8930	15354	15506	31329	31329					0.03363833156390683
VWTPIPVLTW	10	Unmodified	_VWTPIPVLTW_					0	0	0		ENSG00000186501|ENST00000374076|TMEM222	ENSG00000186501|ENST00000374076|TMEM222	ENSG00000186501|ENST00000374076|TMEM222	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3455810546875	2	606.344792	1210.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.35	1	103.39	102.89	103.89	0.03791								0	0	0	0.33528	1	26395	26395		5.7319	0	1				23204	5081	15355	15507	31330	31330					0.07812052442204731
VWTYSYLVL	9	Unmodified	_VWTYSYLVL_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3;ENSG00000117479|ENST00000236137|SLC19A2	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3082275390625	2	572.307875	1142.6012	0.38964	0.00022299	0.55675	0.00031863	0.94638	0.00054162	572.3076964558029	96.469	0.45245	96.509	96.293	96.745	0.039772					73	22	4	0	0	0	0.17247	1	24279	24279		21.747	1.293	1	544150			23205	2003	15356	15508	31331	31331					0.035600842798885424
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3053588867188	2	579.305136	1156.59572	0.19106	0.00011068	0.085998	4.9819E-05	0.27706	0.0001605	579.3050586026465	104.64	0.7402	104.64	104.39	105.13	0					230	70	4	0	0	0	0.00065346	2	26918	26918;26954		129.2	104.53	1	2056400			23206	3184	15357	15509	31332;31333	31332					0.023684054880959593
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3049926757812	2	579.305136	1156.59572	0.15222	8.818E-05	-0.043094	-2.4965E-05	0.10912	6.3215E-05	579.3049996661248	105.16	0.20988	105.16	105.13	105.34	0					37	21	3	0	0	0	0.05573	1	27119	27119		42.095	25.945	1	133410			23207	3184	15357	15509	31334	31334					0.023684054880959593
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3051147460938	2	579.305136	1156.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.41	1	105.41	104.91	105.91	0								0	0	0	0.11877	1	27155	27155		30.225	17.693	1				23208	3184	15357	15509	31335	31335					0.023684054880959593
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2931518554688	2	579.305136	1156.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.47	1	105.47	104.97	105.97	0								0	0	0	0.19992	1	27172	27172		18.135	11.929	1				23209	3184	15357	15509	31336	31336					0.023684054880959593
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.303466796875	2	579.305136	1156.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.52	1	105.52	105.02	106.02	0								0	0	0	0.16627	1	27185	27185		23.148	15.238	1				23210	3184	15357	15509	31337	31337					0.023684054880959593
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3053588867188	2	579.305136	1156.59572	0.48057	0.0002784	-0.28842	-0.00016708	0.19215	0.00011132	579.3048438733003	104.56	0.86445	104.59	104.35	105.22	0.034004					227	89	4	0	0	0	3.6101E-09	5	26758	26723;26758;26798;26830;26862		170.4	124.7	1	2956100			23211	3184	15357	15509	31338;31339;31340;31341;31342	31339					0.023684054880959593
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2927856445312	2	579.305136	1156.59572	0.45752	0.00026505	-0.2999	-0.00017373	0.15763	9.1313E-05	579.3047495975512	105.35	0.17057	105.38	105.25	105.42	0.034004					28	17	3	0	0	0	0.16036	2	26928	26928;26956		23.148	15.238	1	66248			23212	3184	15357	15509	31343;31344	31343					0.023684054880959593
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.305419921875	2	579.305136	1156.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.03	1	105.06	104.56	105.56	0.034004								0	0	0	0.13043	1	26866	26866		28.487	16.847	1				23213	3184	15357	15509	31345	31345					0.023684054880959593
VWVPFIYSF	9	Unmodified	_VWVPFIYSF_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3053588867188	2	579.305136	1156.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.19	1	105.22	104.72	105.72	0.034004								0	0	0	0.13043	1	26912	26912		28.487	16.847	1				23214	3184	15357	15509	31346	31346					0.023684054880959593
VWWLAPNAP	9	Unmodified	_VWWLAPNAP_					0	0	0			REV__ENSG00000215009|ENST00000399422|ACSM4	REV__ENSG00000215009|ENST00000399422|ACSM4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.279296875	2	527.279452	1052.54435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.403	1	23.503	23.003	24.003	0.099739								0	0	0	0.29233	1	2280	2280		0.6015	0	1		+		23215	11013	15358	15510	31347	31347					0.020180815140292907
VWWLAPNAP	9	Unmodified	_VWWLAPNAP_					0	0	0			REV__ENSG00000215009|ENST00000399422|ACSM4	REV__ENSG00000215009|ENST00000399422|ACSM4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.279296875	2	527.279452	1052.54435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.853	1	24.949	24.449	25.449	0.096073								0	0	0	0.29233	1	2679	2679		0.6015	0	1		+		23216	11013	15358	15510	31348	31348					0.020180815140292907
VWYSESTSF	9	Unmodified	_VWYSESTSF_					0	0	0		nc|ENSG00000124812|P54107-2|CRISP1;ENSG00000124812|ENST00000335847|CRISP1	nc|ENSG00000124812|P54107-2|CRISP1	nc|ENSG00000124812|P54107-2|CRISP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3343505859375	2	553.245472	1104.47639	0.23823	0.0001318	2.2121	0.0012238	2.4503	0.0013556	553.2466347870403	73.713	0.28676	73.713	73.571	73.857	0					13	9	2	0	0	0	0.23975	1	17549	17549		14.838	1.7958	1	74771			23217	2277	15359	15511	31349	31349					-0.07166832927282485
VWYVVNSTY	9	Unmodified	_VWYVVNSTY_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7789306640625	2	565.779482	1129.54441	-0.10966	-6.2044E-05	-0.79855	-0.0004518	-0.90821	-0.00051385	565.7789937116675	31.46	0.41113	31.534	31.346	31.757	0.07378					33	19	2	0	0	0	0.34646	1	4639	4639		0.6015	0	1	30753			23218	3446	15360	15512	31350	31350					-0.015179632766148643
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.8507690429688	2	587.850773	1173.68699	0.39566	0.00023259	0.032803	1.9283E-05	0.42846	0.00025187	587.8507171512164	56.458	0.70594	56.458	56.242	56.948	0					63	25	4	0	0	0	4.3448E-16	1	12290	12290		180.01	117.44	1	924710			23219	4738	15361	15513	31351	31351					0.10709669185393977
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.8507690429688	2	587.850773	1173.68699	0.48632	0.00028588	0.026802	1.5756E-05	0.51312	0.00030164	587.8507312254523	56.394	0.66027	56.461	56.254	56.914	0.066452					58	23	4	0	0	0	2.0399E-07	1	12135	12135		149.99	102.4	1	805520			23220	4738	15361	15513	31352	31352					0.10709669185393977
VYAAYLKM	8	Unmodified	_VYAAYLKM_					0	0	0		ENSG00000127074|ENST00000391995|RGS13	ENSG00000127074|ENST00000391995|RGS13	ENSG00000127074|ENST00000391995|RGS13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2478332519531	2	479.756964	957.499375	0.11597	5.5636E-05	2.766	0.001327	2.882	0.0013827	479.7583491184008	62.452	0.15256	62.452	62.341	62.494	0					7	5	2	0	0	0	0.3576	1	14097	14097		6.3541	2.0249	1	51661			23221	2355	15362	15514	31353	31353					0.018925146564924944
VYADGIFDLF	10	Unmodified	_VYADGIFDLF_					0	0	0		ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B	ENST00000491544.1_1_3:195974480-195997402:-|nuORF	ENST00000491544.1_1_3:195974480-195997402:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.2875366210938	2	580.28714	1158.55973	0.39927	0.00023169	0.030696	1.7813E-05	0.42997	0.00024951	580.2872882604134	102.01	1.5706	102.01	101.69	103.26	0					303	111	5	0	0	0	1.4492E-07	3	26127	26127;26169;26207		152.41	93.733	1	10752000			23222	1305	15363	15515	31354;31355;31356	31354					-0.013210964794552638
VYADGIFDLF	10	Unmodified	_VYADGIFDLF_					0	0	0		ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B	ENST00000491544.1_1_3:195974480-195997402:-|nuORF	ENST00000491544.1_1_3:195974480-195997402:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.2874145507812	2	580.28714	1158.55973	0.60142	0.000349	-0.1574	-9.1339E-05	0.44402	0.00025766	580.2871737744732	101.97	1.3188	102.01	101.7	103.02	0.042656					330	106	6	0	0	0	1.4492E-07	5	25949	25915;25949;25961;25986;26025		152.41	93.733	1	7031800			23223	1305	15363	15515	31357;31358;31359;31360;31361	31358					-0.013210964794552638
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7973022460938	2	525.797143	1049.57973	0.56371	0.0002964	0.14637	7.6959E-05	0.71008	0.00037336	525.7971726424995	97.806	0.4939	97.806	97.661	98.155	0					69	26	4	0	0	0	0.21398	2	24922	24915;24922		16.942	4.4107	1	360940			23224	4298	15364	15516	31362;31363	31363					0.056926992511762364
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7971801757812	2	525.797143	1049.57973	0.4518	0.00023755	0.3679	0.00019344	0.8197	0.000431	525.797274223415	97.846	0.53894	97.887	97.648	98.187	0.040855					66	28	3	0	0	0	0.092418	1	24710	24710		34.102	12.356	1	444000			23225	4298	15364	15516	31364	31364					0.056926992511762364
VYADKLLNI	9	Unmodified	_VYADKLLNI_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.8054809570312	2	524.8055	1047.59645	0.34361	0.00018033	-0.50186	-0.00026338	-0.15825	-8.3053E-05	524.8051808207529	61.164	0.44668	61.164	60.942	61.389	0					35	15	3	0	0	0	0.00648	1	13703	13703		78.06	7.7285	1	236430			23226	2866	15365	15517	31365	31365					0.07455200137110296
VYADKLLNI	9	Unmodified	_VYADKLLNI_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8055419921875	2	524.8055	1047.59645	0.14401	7.5576E-05	-0.0014073	-7.3857E-07	0.1426	7.4837E-05	524.8053846618133	61.058	0.47417	61.132	60.94	61.414	0.073421					35	15	3	0	0	0	0.038996	1	13530	13530		45.74	9.2337	1	261720			23227	2866	15365	15517	31366	31366					0.07455200137110296
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2717895507812	2	545.271824	1088.5291	0.19876	0.00010838	0.37531	0.00020465	0.57407	0.00031302	545.2719265768974	52.353	1.3062	52.353	52.104	53.41	0					100	48	3	0	0	0	0.0040275	5	11039	10990;11039;11090;11150;11217		103.35	65.38	1	822160			23228	1200	15366	15518	31367;31368;31369;31370;31371	31368					-0.011628300738266262
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2717895507812	2	545.271824	1088.5291	0.29757	0.00016226	0.30572	0.0001667	0.60329	0.00032896	545.2718727566138	52.312	1.0955	52.379	52.112	53.208	0.067169					103	45	4	0	0	0	0.0021834	4	10895	10854;10895;10987;11044		114.65	76.675	1	701800			23229	1200	15366	15518	31372;31373;31374;31375	31373					-0.011628300738266262
VYAEIHSLL	9	Unmodified	_VYAEIHSLL_					0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3029174804688	2	522.78985	1043.56515	0.73694	0.00038526	-0.80595	-0.00042134	-0.069018	-3.6082E-05	522.789155764295	84.837	0.42854	84.837	84.704	85.132	0					27	16	3	0	0	0	0.25209	1	20980	20980		12.532	3.7861	1	121240	+		23230	7914	15367	15519	31376	31376					0.04510627103036313
VYAEIHSLL	9	Unmodified	_VYAEIHSLL_					0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2437744140625	2	522.78985	1043.56515	0.73694	0.00038526	-0.80595	-0.00042134	-0.069018	-3.6082E-05	522.789155764295	84.837	0.42854	84.837	84.704	85.132	0					27	16	3	0	0	0	0.25051	1	21009	21009		7.9102	0.62092	1	121240	+		23231	7914	15367	15519	31377	31377					0.04510627103036313
VYAEIMAVL	9	Oxidation (M)	_VYAEIM(Oxidation (M))AVL_		VYAEIM(1)AVL		VYAEIM(48)AVL	0	0	1		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7730712890625	2	512.772811	1023.53107	0.46992	0.00024096	-0.11987	-6.1467E-05	0.35005	0.0001795	512.7726093540218	75.178	0.95056	75.178	74.661	75.611	0					73	35	3	0	0	0	0.033885	1	17977	17977		48.346	26.599	1	418790			23232	74	15368	15520	31378	31378		0			0.020244626197722937
VYAEIMAVL	9	Unmodified	_VYAEIMAVL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.7572021484375	2	504.775354	1007.53615	0.48674	0.0002457	-0.95941	-0.00048429	-0.47267	-0.00023859	504.7745004936693	85.375	0.35838	85.375	85.101	85.459	0					21	12	2	0	0	0	0.083504	1	21078	21078		36.044	12.896	1	125080			23233	74	15368	15521	31379	31379					0.03268766482381125
VYAEIMAVL	9	Unmodified	_VYAEIMAVL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.7574157714844	2	504.775354	1007.53615	0.60473	0.00030525	-0.78861	-0.00039807	-0.18388	-9.2816E-05	504.77439411696713	85.276	0.60201	85.299	85.091	85.693	0.023125					35	24	2	0	0	0	0.092418	1	20909	20909		34.102	10.954	1	137770			23234	74	15368	15521	31380	31380					0.03268766482381125
VYAEVSRLLL	10	Unmodified	_VYAEVSRLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7752685546875	2	581.845156	1161.67576	0.53409	0.00031076	0.83166	0.0004839	1.3657	0.00079465	581.8459339468288	67.751	0.57577	67.751	67.397	67.973	0					34	21	2	0	0	0	0.30784	1	15697	15697		20.581	10.507	1	253210			23235	1869	15369	15522	31381	31381					0.10138847091275238
VYAEVSRLLL	10	Unmodified	_VYAEVSRLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.775146484375	2	581.845156	1161.67576	0.84515	0.00049175	0.59835	0.00034815	1.4435	0.0008399	581.8457849580333	67.689	0.60951	67.753	67.551	68.16	0.063499					42	21	3	0	0	0	0.28276	1	15531	15531		30.703	15.455	1	351470			23236	1869	15369	15522	31382	31382					0.10138847091275238
VYAFNLDTF	9	Unmodified	_VYAFNLDTF_					0	0	0		ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2662963867188	2	545.266207	1088.51786	0.5038	0.0002747	-0.15544	-8.4758E-05	0.34836	0.00018995	545.2661537568009	83.356	0.76166	83.356	83.079	83.841	0					52	25	3	0	0	0	1.4799E-05	1	20469	20469		144.35	85.671	1	728910			23237	1425	15370	15523	31383	31383					-0.02285652167961416
VYAFNLDTF	9	Unmodified	_VYAFNLDTF_					0	0	0		ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2665405273438	2	545.266207	1088.51786	0.2907	0.00015851	0.40637	0.00022158	0.69706	0.00038008	545.2662528645867	83.309	0.81473	83.331	83.1	83.915	0.021744					71	28	4	0	0	0	8.9867E-09	1	20307	20307		160.52	89.382	1	691700			23238	1425	15370	15523	31384	31384					-0.02285652167961416
VYAFPSFFEF	10	Unmodified	_VYAFPSFFEF_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	418.5333251953125	3	418.534097	1252.58046	0.62884	0.00026319	-2.4885	-0.0010415	-1.8597	-0.00077834	418.5327610356069	55.642	0.53976	55.642	55.467	56.007	0					38	18	3	0	0	0	0.43672	1	12050	12050		3.8763	0	1	185040	+		23239	8864	15371	15524	31385	31385					-0.03572506099771999
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2664794921875	2	545.266207	1088.51786	0.72318	0.00039432	-0.27786	-0.00015151	0.44532	0.00024282	545.2660634318728	81.916	0.62672	81.916	81.632	82.259	0					62	21	4	0	0	0	6.2762E-06	2	20029	20029;20093		152.41	91.055	1	1139300			23240	2015	15372	15525	31386;31387	31386					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.266357421875	2	545.266207	1088.51786	0.38153	0.00020803	0.090181	4.9173E-05	0.47171	0.00025721	545.2661983160242	81.949	0.56971	81.971	81.676	82.246	0.021866					59	19	4	0	0	0	6.2762E-06	2	19863	19863;19917		152.41	91.055	1	1070500			23241	2015	15372	15525	31388;31389	31388					-0.02285652167961416
VYAGGFTLTV	10	Unmodified	_VYAGGFTLTV_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2763671875	2	514.276575	1026.5386	0.60712	0.00031223	-1.9435	-0.00099948	-1.3364	-0.00068725	514.2754035556686	83.68	0.44582	83.68	83.485	83.931	0					20	14	2	0	0	0	0.40987	1	20589	20589		10.824	0.024421	1	69739	+		23242	8620	15373	15526	31390	31390					0.026389382116803972
VYAHFPINVVI	11	Unmodified	_VYAHFPINVVI_					0	0	0		ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENSG00000163682|ENST00000295955|RPL9	ENSG00000163682|ENST00000295955|RPL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.361572265625	2	636.360973	1270.70739	0.33237	0.00021151	0.24998	0.00015908	0.58235	0.00037059	636.3611018620514	75.252	0.44201	75.252	75.09	75.532	0					31	16	3	0	0	0	0.34344	1	18011	18011		13.042	3.4985	1	242000			23243	3935	15374	15527	31391	31391					0.08286839845209215
VYAHFPINVVI	11	Unmodified	_VYAHFPINVVI_					0	0	0		ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENSG00000163682|ENST00000295955|RPL9	ENSG00000163682|ENST00000295955|RPL9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	636.360973	1270.70739	0.33103	0.00021065	-0.054613	-3.4754E-05	0.27641	0.0001759	636.3606925258191	75.203	0.38287	75.247	75.142	75.525	0.044037	-0.0026721	-0.00021582	NaN	13.042	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200060			23244	3935	15374	15527							0.08286839845209215
VYAHIYHQHF	10	Unmodified	_VYAHIYHQHF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	438.8839416503906	3	438.884123	1313.63054	0.057318	2.5156E-05	-0.31015	-0.00013612	-0.25283	-0.00011096	438.8839575417647	32.825	1.5033	32.825	32.526	34.029	0					139	61	4	0	0	0	0.44253	2	5122	5122;5176		6.1918	3.9391	1	48630			23245	1867	15375	15528	31392;31393	31392					-0.013729586512681635
VYAHIYHQHF	10	Unmodified	_VYAHIYHQHF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	438.88409423828125	3	438.884123	1313.63054	-0.17913	-7.8618E-05	0.12131	5.3243E-05	-0.057817	-2.5375E-05	438.8841002107516	32.573	1.223	32.647	32.37	33.593	0.07378					158	56	5	0	0	0	0.46608	1	5036	5036		1.7423	1.7423	1	174030			23246	1867	15375	15528	31394	31394					-0.013729586512681635
VYAHIYHQHF	10	Unmodified	_VYAHIYHQHF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	438.884123	1313.63054	-0.17913	-7.8618E-05	0.12131	5.3243E-05	-0.057817	-2.5375E-05	438.8841002107516	32.573	1.223	32.647	32.37	33.593	0.07378	-0.088887	0.00015127	NaN	6.1918	158	56	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174030			23247	1867	15375	15528							-0.013729586512681635
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7872619628906	2	493.78711	985.559667	0.34933	0.0001725	0.21063	0.00010401	0.55997	0.0002765	493.7870984281878	58.099	0.38846	58.099	57.829	58.217	0					41	13	4	0	0	0	0.00052627	2	12766	12766;12808		131.3	67.735	1	916740			23248	1279	15376	15529	31395;31396	31395					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.7872314453125	2	493.78711	985.559667	0.15807	7.8052E-05	0.19395	9.577E-05	0.35202	0.00017382	493.787177529962	58.373	0.45158	58.373	58.256	58.708	0					25	16	2	0	0	0	0.0037915	1	12857	12857		104.8	60.392	1	197470			23249	1279	15376	15529	31397	31397					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.78753662109375	2	493.78711	985.559667	0.34041	0.00016809	0.18145	8.96E-05	0.52186	0.00025769	493.7871264612164	58.013	0.63433	58.081	57.869	58.503	0.068375					50	23	3	0	0	0	0.00052627	1	12593	12593		131.3	67.735	1	720710			23250	1279	15376	15529	31398	31398					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.78729248046875	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.245	1	58.315	57.815	58.815	0.070477								0	0	0	1.1507E-05	1	12688	12688		104.8	60.392	1				23251	1279	15376	15529	31399	31399					0.06630948311226348
VYAKYWIYV	9	Unmodified	_VYAKYWIYV_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8240966796875	2	602.823692	1203.63283	0.53792	0.00032427	-0.030229	-1.8223E-05	0.5077	0.00030605	602.8234702583178	68.08	0.61397	68.08	67.882	68.496	0					54	21	3	0	0	0	0.033885	1	15863	15863		48.346	25.197	1	430590			23252	1364	15377	15530	31400	31400					0.039160770338412476
VYAKYWIYV	9	Unmodified	_VYAKYWIYV_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8231811523438	2	602.823692	1203.63283	0.70778	0.00042667	-0.24274	-0.00014633	0.46504	0.00028034	602.8232057823348	68.06	0.60577	68.123	67.874	68.48	0.063507					56	22	3	0	0	0	0.092418	1	15691	15691		34.102	10.954	1	555880			23253	1364	15377	15530	31401	31401					0.039160770338412476
VYALPTIAF	9	Unmodified	_VYALPTIAF_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.78363037109375	2	497.784036	993.553519	0.35733	0.00017787	-0.41456	-0.00020636	-0.057237	-2.8491E-05	497.7837792652903	87.326	0.3349	87.326	87.163	87.498	0					19	12	2	0	0	0	0.16036	1	21686	21686		23.148	10.617	1	96875			23254	1703	15378	15531	31402	31402					0.056484300797023934
VYALPTIAF	9	Unmodified	_VYALPTIAF_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7840270996094	2	497.784036	993.553519	0.25934	0.0001291	-0.536	-0.00026681	-0.27666	-0.00013772	497.78374345067084	87.261	0.40405	87.289	87.176	87.58	0.027573					21	16	2	0	0	0	0.16036	2	21516	21516;21565		23.148	10.617	1	116540			23255	1703	15378	15531	31403;31404	31403					0.056484300797023934
VYALVVVSY	9	Unmodified	_VYALVVVSY_					0	0	0		ENST00000510556.1_1_4:109571811-109578607:+|nuORF;ENSG00000198856|ENST00000361564|OSTC;nc|ENSG00000198856|Q9NRP0-2|OSTC	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7893981933594	2	506.789318	1011.56408	0.243	0.00012315	0.033042	1.6745E-05	0.27604	0.0001399	506.7893546757353	77.127	0.35929	77.127	76.895	77.254	0					20	12	2	0	0	0	0.05573	1	18574	18574		42.095	25.152	1	475620			23256	5419	15379	15532	31405	31405					0.05876412734130554
VYALVVVSY	9	Unmodified	_VYALVVVSY_					0	0	0		ENST00000510556.1_1_4:109571811-109578607:+|nuORF;ENSG00000198856|ENST00000361564|OSTC;nc|ENSG00000198856|Q9NRP0-2|OSTC	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7891540527344	2	506.789318	1011.56408	0.35162	0.0001782	-0.027734	-1.4055E-05	0.32389	0.00016414	506.7892109469949	77.102	0.34554	77.136	76.906	77.251	0.034485					21	12	2	0	0	0	0.083504	2	18400	18400;18452		36.044	19.102	1	436850			23257	5419	15379	15532	31406;31407	31406					0.05876412734130554
VYALYIVAL	9	Unmodified	_VYALYIVAL_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.8074340820312	2	512.807511	1023.60047	0.56184	0.00028812	-0.84532	-0.00043348	-0.28348	-0.00014537	512.8068941907197	92.313	0.34914	92.313	92.164	92.513	0					22	12	2	0	0	0	0.081567	1	23268	23268		36.466	20.619	1	169020			23258	3993	15380	15533	31408	31408					0.0896128963083811
VYALYIVAL	9	Unmodified	_VYALYIVAL_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.8079223632812	2	512.807511	1023.60047	0.50021	0.00025651	-0.60222	-0.00030882	-0.10201	-5.2314E-05	512.8071188173419	92.357	0.43096	92.394	92.154	92.585	0.03653					24	14	2	0	0	0	0.038949	1	23064	23064		45.75	17.263	1	154870			23259	3993	15380	15533	31409	31409					0.0896128963083811
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.284912109375	2	510.285266	1018.55598	-0.30498	-0.00015562	0.14813	7.559E-05	-0.15684	-8.0035E-05	510.28521678404763	40.578	0.73786	40.578	40.408	41.146	0					51	26	4	0	0	0	0.0097093	2	7451	7451;7499		68.081	29.93	1	222490			23260	3250	15381	15534	31410;31411	31410					0.047442785373846164
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2852478027344	2	510.285266	1018.55598	-0.14561	-7.4302E-05	0.1775	9.0575E-05	0.031891	1.6274E-05	510.2852667699004	40.479	0.49915	40.568	40.378	40.877	0.089645					43	19	3	0	0	0	0.037705	2	7294	7294;7344		46.021	21.347	1	175460			23261	3250	15381	15534	31412;31413	31412					0.047442785373846164
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.8040161132812	2	557.803823	1113.59309	-0.17322	-9.662E-05	0.33768	0.00018836	0.16446	9.1739E-05	557.8040516503951	20.855	0.40679	20.855	20.72	21.127	0					91	43	3	0	0	0	0.074645	1	1721	1721		37.974	21.032	1	73953			23262	5287	15382	15535	31414	31414					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8037719726562	2	557.803823	1113.59309	0.29805	0.00016625	-0.065495	-3.6533E-05	0.23255	0.00012972	557.8037899737564	20.71	0.31897	20.81	20.682	21.001	0.099499					86	34	3	0	0	0	0.12809	1	1578	1578		26.884	17.536	1	84060			23263	5287	15382	15535	31415	31415					0.04083950083122545
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.8058471679688	2	533.805834	1065.59712	0.39755	0.00021221	-0.31116	-0.0001661	0.086389	4.6115E-05	533.8053817132692	61.315	0.34209	61.315	61.135	61.477	0					24	11	3	0	0	0	0.0074933	1	13762	13762		74.929	28.908	1	240810			23264	4336	15383	15536	31416	31416					0.06694039576836985
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8059692382812	2	533.805834	1065.59712	0.45858	0.0002448	0.12043	6.4286E-05	0.57901	0.00030908	533.8058770671605	61.273	0.35837	61.347	61.11	61.469	0.073421					20	12	2	0	0	0	0.0046499	1	13619	13619		85.272	39.251	1	228410			23265	4336	15383	15536	31417	31417					0.06694039576836985
VYARSGTEF	9	Unmodified	_VYARSGTEF_					0	0	0			REV__ENST00000552029.1_1_12:107380386-107380746:-|nuORF	REV__ENST00000552029.1_1_12:107380386-107380746:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.254638671875	2	515.253631	1028.49271	0.49816	0.00025668	1.4653	0.00075501	1.9635	0.0010117	515.2541592124838	68.646	0.50373	68.646	68.348	68.852	0					39	17	3	0	0	0	0.10067	1	15979	15979		32.305	0	1	197270	+		23266	12440	15384	15537	31418	31418					-0.020397069705268223
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2	ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000464583.5_1_6:4119386-4125894:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7291259765625	2	515.253631	1028.49271	0.30044	0.0001548	-0.53535	-0.00027584	-0.23491	-0.00012104	515.2529410101965	37.047	0.28821	37.047	36.889	37.177	0					23	11	3	0	0	0	0.24101	1	6386	6386		15.248	4.4246	1	28911			23267	5391	15385	15538	31419	31419					-0.020397069705495596
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2	ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000464583.5_1_6:4119386-4125894:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7293701171875	2	515.253631	1028.49271	0.29818	0.00015364	-0.42313	-0.00021802	-0.12495	-6.438E-05	515.2533707495611	36.951	0.23627	37.033	36.896	37.133	0.081711					15	8	2	0	0	0	0.25051	1	6272	6272		7.9102	0	1	37424			23268	5391	15385	15538	31420	31420					-0.020397069705495596
VYASFALCMF	10	Oxidation (M)	_VYASFALCM(Oxidation (M))F_		VYASFALCM(1)F		VYASFALCM(52)F	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.264404296875	2	584.264296	1166.51404	0.52186	0.0003049	-0.74956	-0.00043794	-0.2277	-0.00013303	584.2644458105019	88.778	0.68174	88.778	88.512	89.194	0					65	28	3	0	0	0	0.06954	1	22205	22205		52.268	36.421	1	113360			23269	2979	15386	15539	31421	31421		191			-0.06255781257686976
VYASFALCMF	10	Oxidation (M)	_VYASFALCM(Oxidation (M))F_		VYASFALCM(1)F		VYASFALCM(140)F	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.264404296875	2	584.264296	1166.51404	0.47809	0.00027933	-1.0086	-0.00058929	-0.53051	-0.00030996	584.2638857900454	86.948	0.86829	86.976	86.782	87.651	0.027573					50	36	3	0	0	0	6.6681E-07	2	21428	21405;21428		139.54	105.14	1	458100			23270	2979	15386	15539	31422;31423	31423		191			-0.06255781257686976
VYASLGALLF	10	Unmodified	_VYASLGALLF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.3026733398438	2	527.302593	1052.59063	0.35197	0.0001856	0.048586	2.5619E-05	0.40056	0.00021122	527.3024729499668	94.554	1.0895	94.554	94.315	95.405	0					105	45	4	0	0	0	2.5684E-07	2	23897	23897;23945		147.83	55.009	1	851220			23271	4752	15387	15540	31424;31425	31424					0.06644101625465737
VYASLGALLF	10	Unmodified	_VYASLGALLF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.302734375	2	527.302593	1052.59063	0.24476	0.00012906	0.10565	5.5711E-05	0.35041	0.00018477	527.3025631541705	94.563	0.85004	94.601	94.343	95.193	0.038086					84	34	4	0	0	0	2.5684E-07	3	23734	23734;23781;23828		147.83	55.009	1	1501900			23272	4752	15387	15540	31426;31427;31428	31426					0.06644101625465737
VYAVGVKLWG	10	Unmodified	_VYAVGVKLWG_					0	0	0			REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.783203125	2	546.316035	1090.61752	-0.43764	-0.00023909	-2.2372	-0.0012222	-2.6748	-0.0014613	546.8171176867309	41.216	0.33378	41.216	41.046	41.38	0					16	11	2	0	0	0	0.31712	1	7693	7693		6.7232	1.9672	1	54913	+		23273	7880	15388	15541	31429	31429					0.07583210236634841
VYAVGVKLWG	10	Unmodified	_VYAVGVKLWG_					0	0	0			REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7533569335938	2	546.316035	1090.61752	-0.27587	-0.00015071	-2.819	-0.0015401	-3.0949	-0.0016908	546.8167114147701	41.122	0.30972	41.212	41.088	41.398	0.089642					14	10	2	0	0	0	0.31712	1	7558	7558		6.7232	1.9672	1	46149	+		23274	7880	15388	15541	31430	31430					0.07583210236634841
VYAVIPAEKF	10	Unmodified	_VYAVIPAEKF_					0	0	0		ENST00000474020.5_1_1:47118240-47133739:-|nuORF;nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1	ENST00000474020.5_1_1:47118240-47133739:-|nuORF	ENST00000474020.5_1_1:47118240-47133739:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8203735351562	2	568.82115	1135.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.979	1	58.979	58.479	59.479	0								0	0	0	0.10428	1	13044	13044		45.7	18.816	1				23275	2218	15389	15542	31431	31431					0.06535773171231085
VYAVPILIF	9	Unmodified	_VYAVPILIF_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	517.8179321289062	2	517.817879	1033.6212	0.38272	0.00019818	0.021228	1.0992E-05	0.40395	0.00020917	517.8178181854299	101.46	0.823	101.46	101.16	101.98	0					161	56	4	0	0	0	0.0030805	2	25964	25964;26005		109.15	72.688	1	1227700			23276	2656	15390	15543	31432;31433	31432					0.10573880010497305
VYAVPILIF	9	Unmodified	_VYAVPILIF_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	517.8180541992188	2	517.817879	1033.6212	0.45503	0.00023562	0.090594	4.6911E-05	0.54562	0.00028253	517.8178637116362	101.39	0.7935	101.43	101.15	101.94	0.042656					157	56	4	0	0	0	0.0058736	2	25829	25790;25829		79.935	43.468	1	1125900			23277	2656	15390	15543	31434;31435	31435					0.10573880010497305
VYAVVRGLFL	10	Unmodified	_VYAVVRGLFL_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8450317382812	2	568.844959	1135.67537	0.0033638	1.9135E-06	1.3015	0.00074034	1.3048	0.00074225	568.8455844290696	73.31	0.6012	73.31	73.115	73.716	0					43	21	3	0	0	0	0.01986	2	17407	17407;17459		68.081	46.334	1	664250			23278	2893	15391	15544	31436;31437	31436					0.11295472162078113
VYAVVRGLFL	10	Unmodified	_VYAVVRGLFL_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8447875976562	2	568.844959	1135.67537	0.17746	0.00010095	1.1152	0.0006344	1.2927	0.00073535	568.8454547332282	73.262	0.71435	73.315	73.093	73.808	0.052567					50	27	3	0	0	0	0.01986	3	17224	17224;17274;17328		68.081	46.334	1	686280			23279	2893	15391	15544	31438;31439;31440	31438					0.11295472162078113
VYCCLGLFHF	10	Unmodified	_VYCCLGLFHF_					0	0	0			REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF	REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.28076171875	2	601.28028	1200.54601	0.68987	0.0004148	0.47993	0.00028857	1.1698	0.00070338	601.2805866242678	97.738	0.51337	97.738	97.481	97.995	0					55	23	3	0	0	0	0.3939	2	24864	24864;24911		12.532	1.7076	1	228830	+		23280	12121	15392	15545	31441;31442	31441					-0.04624368783902355
VYCCLGLFHF	10	Unmodified	_VYCCLGLFHF_					0	0	0			REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF	REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7825927734375	2	601.28028	1200.54601	0.66939	0.00040249	0.57389	0.00034507	1.2433	0.00074756	601.280552825855	97.687	0.45599	97.727	97.526	97.982	0.040855					56	22	3	0	0	0	0.43343	1	24747	24747		7.9102	1.7044	1	229900	+		23281	12121	15392	15545	31443	31443					-0.04624368783902355
VYCQLSTSF	9	Unmodified	_VYCQLSTSF_					0	0	0			REV__IFT80|p.V349F|1|0.31|ENSG00000068885|chr3:160307694-160307694|C/A|missense_variant	REV__IFT80|p.V349F|1|0.31|ENSG00000068885|chr3:160307694-160307694|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8113403320312	2	524.244418	1046.47428	0.12341	6.4696E-05	3.3508	0.0017567	3.4742	0.0018214	524.2462217527542	36.519	0.40025	36.601	36.39	36.79	0.081715					23	16	2	0	0	0	0.23975	1	6138	6138		14.838	0.93222	1	55196	+		23282	12683	15393	15546	31444	31444					-0.04709584936745159
VYDELFYTL	9	Unmodified	_VYDELFYTL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.787353515625	2	581.786973	1161.55939	0.46184	0.0002687	-0.7612	-0.00044286	-0.29936	-0.00017416	581.7868723078633	87.426	0.5839	87.426	87.211	87.795	0					51	21	3	0	0	0	0.01943	1	21741	21741		58.679	28.042	1	315640			23283	1390	15394	15547	31445	31445					-0.014925161992778158
VYDELFYTL	9	Unmodified	_VYDELFYTL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.28857421875	2	581.786973	1161.55939	0.43463	0.00025286	-0.70413	-0.00040966	-0.2695	-0.00015679	581.7867292844478	87.378	0.6132	87.406	87.151	87.764	0.027573					48	24	3	0	0	0	0.01943	2	21547	21547;21594		58.679	34.658	1	364340			23284	1390	15394	15547	31446;31447	31446					-0.014925161992778158
VYDGKFAIF	9	Unmodified	_VYDGKFAIF_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;nc|ENSG00000065361|P21860-2|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.8187866210938	2	530.279118	1058.54368	0.61868	0.00032807	-0.090299	-4.7884E-05	0.52838	0.00028019	530.2790357685932	65.086	0.57463	65.086	64.897	65.472	0					39	20	3	0	0	0	0.16392	1	14911	14911		32.786	7.3864	1	252200			23285	682	15395	15548	31448	31448					0.016752420743159746
VYDGKFAIF	9	Unmodified	_VYDGKFAIF_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;nc|ENSG00000065361|P21860-2|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2791748046875	2	530.279118	1058.54368	0.504	0.00026726	-0.068073	-3.6098E-05	0.43592	0.00023116	530.2791599995038	65.022	0.66356	65.091	64.84	65.503	0.068916					37	24	2	0	0	0	0.098463	1	14758	14758		32.786	7.3864	1	246570			23286	682	15395	15548	31449	31449					0.016752420743159746
VYDGLFLYN	9	Unmodified	_VYDGLFLYN_					0	0	0			REV__nc|ENSG00000172531|P62136-3|PPP1CA	REV__nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2732543945312	2	552.274032	1102.53351	0.67602	0.00037335	-3.1683	-0.0017498	-2.4923	-0.0013764	552.2729356427022	82.392	0.45478	82.392	82.17	82.625	0					26	15	2	0	0	0	0.24366	1	20191	20191		13.042	4.2971	1	151130	+		23287	10291	15396	15549	31450	31450					-0.013653656509177381
VYDGLFLYN	9	Unmodified	_VYDGLFLYN_					0	0	0			REV__nc|ENSG00000172531|P62136-3|PPP1CA	REV__nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.274032	1102.53351	0.48886	0.00026999	-3.1121	-0.0017187	-2.6232	-0.0014487	552.2727911853656	82.344	0.37127	82.366	82.246	82.617	0.021744	-0.013078	2.2761E-05	NaN	24.021	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150150	+		23288	10291	15396	15549							-0.013653656509177381
VYDKQIGVY	9	Unmodified	_VYDKQIGVY_					0	0	0		nc|ENSG00000047644|Q9ULE0-2|WWC3;ENSG00000047644|ENST00000380861|WWC3	nc|ENSG00000047644|Q9ULE0-2|WWC3	nc|ENSG00000047644|Q9ULE0-2|WWC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.284423828125	2	542.787307	1083.56006	-0.07995	-4.3396E-05	-3.5884	-0.0019478	-3.6684	-0.0019911	543.2861116114103	45.805	0.93613	45.805	45.271	46.207	0					36	30	2	0	0	0	0.25209	1	9031	9031		12.532	2.381	1	298230			23289	561	15397	15550	31451	31451					0.021623232404408554
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2821044921875	2	541.281857	1080.54916	0.59554	0.00032236	0.4067	0.00022014	1.0022	0.00054249	541.2818745900421	82.408	0.72974	82.408	82.142	82.872	0					57	25	3	0	0	0	0.0016252	2	20216	20172;20216		118.07	65.8	1	1426300			23290	1159	15398	15551	31452;31453	31453					0.012109208661286175
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.2822875976562	2	541.281857	1080.54916	0.42724	0.00023125	0.65983	0.00035715	1.0871	0.00058841	541.2819827775147	82.404	0.71664	82.425	82.161	82.877	0.021744					59	25	3	0	0	0	0.0028522	3	20007	20007;20052;20100		110.55	74.426	1	1336500			23291	1159	15398	15551	31454;31455;31456	31454					0.012109208661286175
VYDPSLKTLL	10	Unmodified	_VYDPSLKTLL_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2685546875	2	574.831714	1147.64888	0.42507	0.00024435	0.24009	0.00013801	0.66517	0.00038236	574.8316031119888	63.536	0.31587	63.607	63.444	63.76	0.071018					16	10	2	0	0	0	0.31708	1	14307	14307		7.609	1.8485	1	91579			23292	623	15399	15552	31457	31457					0.0809573848009677
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.249267578125	2	527.763832	1053.51311	-0.36392	-0.00019206	-0.66324	-0.00035004	-1.0272	-0.0005421	527.7633740937578	41.224	0.46804	41.314	41.153	41.621	0.089645					33	17	4	0	0	0	0.16392	1	7546	7546		32.786	16.939	1	117190			23293	2970	15400	15553	31458	31458					-0.011505363107289668
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2944946289062	2	578.295299	1154.57605	0.24694	0.0001428	-1.263	-0.00073041	-1.0161	-0.00058761	578.2949838763695	49.847	0.39777	49.847	49.653	50.05	0					25	13	3	0	0	0	0.026209	1	10252	10252		53.833	28.433	1	171050			23294	5023	15401	15554	31459	31459					0.004940294773177811
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2950439453125	2	578.295299	1154.57605	0.29754	0.00017207	-0.097664	-5.6479E-05	0.19988	0.00011559	578.2950550502974	49.79	0.44286	49.864	49.655	50.097	0.07312					24	15	2	0	0	0	0.029291	2	10097	10097;10145		51.63	29.883	1	150050			23295	5023	15401	15554	31460;31461	31460					0.004940294773177811
VYDVITFFL	9	Unmodified	_VYDVITFFL_					0	0	0			REV__ENST00000585906.5_1_18:43437816-43497657:-|nuORF	REV__ENST00000585906.5_1_18:43437816-43497657:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.8025512695312	2	558.802426	1115.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.84	1	104.87	104.37	105.37	0.034004								0	0	0	0.2428	1	26813	26813		10.824	2.2306	1		+		23296	9668	15402	15555	31462	31462					0.03712681905631143
VYDVVELKF	9	Unmodified	_VYDVVELKF_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.3243408203125	2	556.305332	1110.59611	0.62317	0.00034667	-0.14671	-8.1615E-05	0.47646	0.00026506	556.3052003735795	68.757	0.60234	68.757	68.53	69.132	0					58	22	3	0	0	0	0.0077293	3	16007	16007;16013;16061		74.2	39.268	1	673600			23297	3408	15403	15556	31463;31464;31465	31463					0.0452378041729844
VYDVVELKF	9	Unmodified	_VYDVVELKF_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.305419921875	2	556.305332	1110.59611	0.55138	0.00030674	0.073497	4.0887E-05	0.62488	0.00034763	556.3052922557868	68.71	0.54873	68.772	68.559	69.108	0.062119					49	20	3	0	0	0	0.023873	1	15899	15899		55.503	27.874	1	518020			23298	3408	15403	15556	31466	31466					0.0452378041729844
VYEDDETIL	9	Unmodified	_VYEDDETIL_					0	0	0			REV__ENST00000427497.3_1_17:17106083-17118331:-|nuORF	REV__ENST00000427497.3_1_17:17106083-17118331:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.334716796875	2	548.755869	1095.49719	0.52423	0.00028767	4.315	0.0023679	4.8392	0.0026555	549.2600831760715	96.645	0.34457	96.685	96.496	96.841	0.039772					32	16	3	0	0	0	0.24263	1	24356	24356		12.532	0	1	86516	+		23299	10481	15404	15557	31467	31467					-0.046742873382754624
VYEEANDMTI	10	Unmodified	_VYEEANDMTI_					0	0	0			REV__ENST00000557695.1_1_14:31572066-31574703:-|nuORF	REV__ENST00000557695.1_1_14:31572066-31574703:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3474731445312	2	592.760629	1183.5067	0.4056	0.00024042	0.81818	0.00048499	1.2238	0.00072541	592.7593227968316	82.986	0.28548	82.986	82.823	83.108	0					22	9	4	0	0	0	0.31616	1	20407	20407		10.074	2.1638	1	91954	+		23300	8328	15405	15558	31468	31468					-0.07770842324407568
VYEGITFEDF	10	Unmodified	_VYEGITFEDF_					0	0	0		nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.7954711914062	2	610.279512	1218.54447	0.17521	0.00010693	-1.5446	-0.00094262	-1.3694	-0.00083569	610.7808065877339	56.64	0.40461	56.64	56.512	56.916	0					21	14	2	0	0	0	0.31783	1	12410	12410		3.9444	0	1	146900			23301	1020	15406	15559	31469	31469					-0.056060080672978074
VYEGITFEDF	10	Unmodified	_VYEGITFEDF_					0	0	0		nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.7960815429688	2	610.279512	1218.54447	0.31085	0.00018971	1.1296	0.00068939	1.4405	0.0008791	610.7830829407214	56.463	0.61875	56.53	56.234	56.853	0.066452					29	22	3	0	0	0	0.38104	1	12203	12203		13.906	3.8321	1	338020			23302	1020	15406	15559	31470	31470					-0.056060080672978074
VYEKERNI	8	Unmodified	_VYEKERNI_					0	0	0		ENST00000460143.1_1_2:143676251-143715440:+|nuORF	ENST00000460143.1_1_2:143676251-143715440:+|nuORF	ENST00000460143.1_1_2:143676251-143715440:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7530517578125	2	525.782556	1049.55056	0.15284	8.0361E-05	2.5894	0.0013614	2.7422	0.0014418	525.784181370699	61.223	0.21411	61.297	61.2	61.414	0.073421					9	6	2	0	0	0	0.3576	1	13584	13584		5.7604	0.52976	1	34314			23303	6602	15407	15560	31471	31471					0.027765549549030766
VYEKNGYIYF	10	Unmodified	_VYEKNGYIYF_					0	0	0		chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13	chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1	chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.318603515625	2	648.318971	1294.62339	0.12803	8.3002E-05	-0.001822	-1.1812E-06	0.1262	8.1821E-05	648.3189779211928	59.356	0.53639	59.356	59.144	59.68	0					36	20	2	0	0	0	0.095597	3	13137	13137;13183;13229		45.74	19.472	1	273140			23304	142	15408	15561	31472;31473;31474	31472					-0.012137360423366772
VYEKNGYIYF	10	Unmodified	_VYEKNGYIYF_					0	0	0		chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13	chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1	chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3206787109375	2	648.318971	1294.62339	0.060475	3.9207E-05	-0.34011	-0.0002205	-0.27963	-0.00018129	648.3186407699062	59.214	0.53162	59.286	59.067	59.599	0.072338					34	20	2	0	0	0	0.43214	1	13064	13064		8.1555	2.4237	1	226310			23305	142	15408	15561	31475	31475					-0.012137360423366772
VYELARRH	8	Unmodified	_VYELARRH_					0	0	0		ENST00000467008.5_1_6:16740003-16761651:-|nuORF;ENST00000492857.1_1_6:16740003-16761659:-|nuORF	ENST00000467008.5_1_6:16740003-16761651:-|nuORF	ENST00000467008.5_1_6:16740003-16761651:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3035888671875	2	522.290882	1042.56721	0.73722	0.00038504	-0.010119	-5.2851E-06	0.7271	0.00037976	522.2907509744982	81.744	0.79066	81.744	81.545	82.336	0					49	27	3	0	0	0	0.49441	1	19993	19993		13.508	1.8676	1	472400			23306	6643	15409	15562	31476	31476					0.04763100631521411
VYELPGRIL	9	Unmodified	_VYELPGRIL_					0	0	0			REV__ENSG00000013364|ENST00000357402|MVP	REV__ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.3117065429688	2	530.313492	1058.61243	0.46352	0.00024581	-0.023131	-1.2267E-05	0.44039	0.00023354	530.3133669213204	73.922	1.0285	73.97	73.645	74.673	0.048538					95	37	4	0	0	0	0.26684	1	17598	17598		10.824	1.4408	1	1175300	+		23307	7988	15410	15563	31477	31477					0.08546906374067476
VYENVSHFL	9	Unmodified	_VYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2764892578125	2	554.277106	1106.53966	0.4049	0.00022443	0.25634	0.00014208	0.66124	0.00036651	554.2771620862173	56.29	0.35987	56.356	56.183	56.543	0.066448					28	13	3	0	0	0	0.020768	1	12118	12118		57.722	41.573	1	120510			23308	4040	15411	15564	31478	31478					-0.009348474193984657
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8011474609375	2	592.800946	1183.58734	0.36433	0.00021598	-0.25931	-0.00015372	0.10502	6.2257E-05	592.8007860022666	47.735	0.98724	47.735	47.557	48.544	0					53	33	3	0	0	0	0.0077293	1	9655	9655		74.2	49.209	1	320880			23309	5444	15412	15565	31479	31479					0.0028880678080440703
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8015747070312	2	592.800946	1183.58734	0.51571	0.00030572	-0.049504	-2.9346E-05	0.46621	0.00027637	592.8010152443721	47.652	1.0399	47.732	47.531	48.571	0.080029					70	38	4	0	0	0	0.032232	1	9473	9473		49.527	29.113	1	264010			23310	5444	15412	15565	31480	31480					0.0028880678080440703
VYEYVVERF	9	Unmodified	_VYEYVVERF_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3060913085938	2	602.305864	1202.59717	0.33492	0.00020172	0.44142	0.00026587	0.77634	0.00046759	602.305970236165	58.201	0.30986	58.201	57.907	58.217	0					20	8	3	0	0	0	0.0039507	1	12802	12802		103.82	72.555	1	1842500			23311	2683	15413	15566	31481	31481					0.003979947861580513
VYEYVVERF	9	Unmodified	_VYEYVVERF_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.3060302734375	2	602.305864	1202.59717	0.17303	0.00010422	0.55029	0.00033144	0.72332	0.00043566	602.3061046943355	58.394	1.1968	58.394	58.256	59.453	0					57	44	2	0	0	0	0.0046695	1	12844	12844		84.522	59.531	1	1515600			23312	2683	15413	15566	31482	31482					0.003979947861580513
VYEYVVERF	9	Unmodified	_VYEYVVERF_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3060913085938	2	602.305864	1202.59717	0.38958	0.00023465	0.38135	0.00022969	0.77093	0.00046434	602.3059655153899	58.224	0.99695	58.294	57.972	58.969	0.070477					76	35	3	0	0	0	0.00090591	2	12631	12631;12678		125.04	100.05	1	1710300			23313	2683	15413	15566	31483;31484	31483					0.003979947861580513
VYFEKVKKA	9	Unmodified	_VYFEKVKKA_					0	0	0		ENST00000267615.10_1_14:93406548-93406620:-|nuORF	ENST00000267615.10_1_14:93406548-93406620:-|nuORF	ENST00000267615.10_1_14:93406548-93406620:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.766357421875	2	556.329142	1110.64373	-0.24586	-0.00013678	0.049034	2.7279E-05	-0.19683	-0.0001095	556.3290635170821	42.457	0.34829	42.457	42.305	42.654	0					18	11	2	0	0	0	0.25845	1	8057	8057		2.0598	0	1	40032			23314	5907	15414	15567	31485	31485					0.09283479408145467
VYFFTFIF	8	Unmodified	_VYFFTFIF_					0	0	0		ENSG00000164615|ENST00000297156|CAMLG	ENSG00000164615|ENST00000297156|CAMLG	ENSG00000164615|ENST00000297156|CAMLG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.271728515625	2	542.281129	1082.54771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.482	1	91.482	90.982	91.982	0								0	0	0	0.38822	1	22955	22955		11.114	1.767	1				23315	4022	15415	15568	31486	31486					0.009733315680250598
VYFHHWQI	8	Unmodified	_VYFHHWQI_					0	0	0		ENST00000451333.1_1_2:71037932-71038202:-|nuORF	ENST00000451333.1_1_2:71037932-71038202:-|nuORF	ENST00000451333.1_1_2:71037932-71038202:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7605590820312	2	565.282526	1128.5505	-0.30273	-0.00017113	2.1052	0.00119	1.8025	0.0010189	565.2834154950514	22.773	0.2991	22.773	22.612	22.911	0					44	27	2	0	0	0	0.3576	1	2211	2211		0.79363	0.10326	1	10043			23316	6563	15416	15569	31487	31487					-0.008634002544340547
VYFHHWQI	8	Unmodified	_VYFHHWQI_					0	0	0		ENST00000451333.1_1_2:71037932-71038202:-|nuORF	ENST00000451333.1_1_2:71037932-71038202:-|nuORF	ENST00000451333.1_1_2:71037932-71038202:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	565.282526	1128.5505	0.0066356	3.751E-06	2.2956	0.0012976	2.3022	0.0013014	565.2838839427985	22.644	0.04122	22.746	22.724	22.765	0.10178	-0.013602	0.00015682	NaN	0.79363	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10392			23317	6563	15416	15569							-0.008634002544340547
VYFKNFIPF	9	Unmodified	_VYFKNFIPF_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.8187255859375	2	587.81841	1173.62227	0.4669	0.00027445	0.19621	0.00011533	0.66311	0.00038979	587.8184588750261	77.589	1.9829	77.589	77.389	79.372	0					137	69	3	0	0	0	0.015682	1	18731	18731		61.357	61.357	1	3054900			23318	7363	15417	15570	31488	31488					0.042400943794064005
VYFKNFIPF	9	Unmodified	_VYFKNFIPF_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.8186645507812	2	587.81841	1173.62227	0.7116	0.00041829	-0.76935	-0.00045224	-0.05775	-3.3947E-05	587.818253084202	77.545	1.5694	77.58	77.287	78.857	0.034485					169	57	6	0	0	0	0.021119	2	18568	18568;18656		57.471	23.369	1	3306900			23319	7363	15417	15570	31489;31490	31489					0.042400943794064005
VYFNRAHF	8	Unmodified	_VYFNRAHF_					0	0	0		nc|ENSG00000139865|Q86TZ1|TTC6;ENSG00000139865|ENST00000553443|TTC6	nc|ENSG00000139865|Q86TZ1|TTC6	nc|ENSG00000139865|Q86TZ1|TTC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2334594726562	2	527.266876	1052.5192	0.47363	0.00024973	-0.84439	-0.00044522	-0.37075	-0.00019549	527.7695333226616	82.615	0.24789	82.615	82.509	82.757	0					12	8	2	0	0	0	0.3576	1	20272	20272		6.3541	0	1	117600			23320	2990	15418	15571	31491	31491					-0.004959732885254198
VYFPDQHINF	10	Unmodified	_VYFPDQHINF_					0	0	0		nc|ENSG00000116117|Q8TEW8-5|PARD3B;nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.3077392578125	2	640.308938	1278.60332	0.44845	0.00028715	-0.97279	-0.00062288	-0.52434	-0.00033574	640.3080036794203	64.251	0.51292	64.251	63.972	64.485	0					27	17	2	0	0	0	0.33001	1	14645	14645		19.362	5.4559	1	179200			23321	1941	15419	15572	31492	31492					-0.024834869822825567
VYFPDQHINF	10	Unmodified	_VYFPDQHINF_					0	0	0		nc|ENSG00000116117|Q8TEW8-5|PARD3B;nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.810546875	2	640.308938	1278.60332	0.36691	0.00023493	-0.29065	-0.00018611	0.076259	4.8829E-05	640.3086266411423	64.162	0.51105	64.233	64.027	64.538	0.071014					24	17	2	0	0	0	0.36848	1	14484	14484		15.248	1.3424	1	184580			23322	1941	15419	15572	31493	31493					-0.024834869822825567
VYFPEELHR	9	Unmodified	_VYFPEELHR_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2894287109375	2	595.303655	1188.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.739	1	64.808	64.308	65.308	0.068916								0	0	0	0.2428	1	14659	14659		10.824	0	1				23323	1178	15420	15573	31494	31494					0.006005303632719006
VYFPSEQVPSA	11	Unmodified	_VYFPSEQVPSA_					0	0	0			REV__ENST00000436747.5_1_2:242689322-242694075:+|nuORF	REV__ENST00000436747.5_1_2:242689322-242694075:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.2921752929688	2	612.300778	1222.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.827	1	81.827	81.327	82.327	0								0	0	0	0.31354	1	20019	20019		10.074	0.72649	1		+		23324	10517	15421	15574	31495	31495					-0.015386129390435599
VYFQLVDVLL	10	Unmodified	_VYFQLVDVLL_					0	0	0		IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant;ENSG00000117408|ENST00000372343|IPO13	IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant	IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7638549804688	2	604.849907	1207.68526	0.64163	0.00038809	0.036914	2.2328E-05	0.67854	0.00041042	604.8498803453475	105.33	0.052544	105.37	105.35	105.4	0.034004					7	5	2	0	0	0	0.31811	1	26953	26953		2.9952	0	1	37333			23325	1999	15422	15575	31496	31496					0.08972615376819704
VYFRALVNF	9	Unmodified	_VYFRALVNF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3057861328125	2	564.813659	1127.61277	0.42559	0.00024038	0.1135	6.4108E-05	0.5391	0.00030449	564.8134747202253	70.974	0.30478	70.974	70.83	71.135	0					13	9	2	0	0	0	0.082308	1	16734	16734		48.346	21.462	1	135920			23326	3123	15423	15576	31497	31497					0.054063260938846724
VYFRALVNF	9	Unmodified	_VYFRALVNF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3052978515625	2	564.813659	1127.61277	0.59225	0.00033451	0.6704	0.00037865	1.2626	0.00071316	564.8135727278361	70.897	0.37514	70.955	70.862	71.237	0.058578					17	13	2	0	0	0	0.10067	1	16553	16553		32.305	15.193	1	77765			23327	3123	15423	15576	31498	31498					0.054063260938846724
VYFTQNQW	8	Unmodified	_VYFTQNQW_					0	0	0		ENST00000490457.5_1_3:40567331-40615968:+|nuORF;nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ENSG00000172888|ENST00000339296|ZNF621	ENST00000490457.5_1_3:40567331-40615968:+|nuORF	ENST00000490457.5_1_3:40567331-40615968:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.25537109375	2	543.256174	1084.49779	-0.32676	-0.00017751	-0.55569	-0.00030188	-0.88245	-0.0004794	543.2558855033361	18.332	0.85762	18.332	18.233	19.091	0					143	99	3	0	0	0	0.54097	1	1187	1187		0.69038	0.088878	1	55214			23328	4516	15424	15577	31499	31499					-0.04107403107900609
VYFVAPAKF	9	Unmodified	_VYFVAPAKF_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2913208007812	2	521.292028	1040.5695	0.19699	0.00010269	0.096992	5.0561E-05	0.29398	0.00015325	521.2918770218911	60.914	0.6452	60.987	60.823	61.469	0.073421					47	22	3	0	0	0	0.011655	1	13501	13501		64.236	37.895	1	393480			23329	625	15425	15578	31500	31500					0.05084136316600052
VYFVAPAKF	9	Unmodified	_VYFVAPAKF_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	521.292028	1040.5695	0.38964	0.00020311	-0.45984	-0.00023971	-0.070208	-3.6599E-05	521.291597132659	61.003	0.6687	61.003	60.749	61.418	0	0.0080045	-0.00027304	NaN	64.236	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347470			23330	625	15425	15578							0.05084136316600052
VYFYEFRH	8	Unmodified	_VYFYEFRH_					0	0	0		nc|ENSG00000159398|Q6NT32-3|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;CES5A|p.Q440E|1|0.35|ENSG00000159398|chr16:55849729-55849729|G/C|missense_variant	nc|ENSG00000159398|Q6NT32-3|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.28271484375	2	580.779816	1159.54508	0.46503	0.00027008	3.6719	0.0021326	4.1369	0.0024026	581.2831329649736	37.182	0.30141	37.266	37.046	37.347	0.084476					20	10	3	0	0	0	0.53423	1	6331	6331		5.2307	0	1	58740			23331	3727	15426	15579	31501	31501					-0.028311238369042258
VYFYEPFRK	9	Unmodified	_VYFYEPFRK_					0	0	0		tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8099975585938	2	624.824224	1247.63389	0.28096	0.00017555	0.13511	8.4421E-05	0.41607	0.00025997	624.8241205638719	62.438	1.0632	62.51	62.261	63.325	0.072701					72	41	3	0	0	0	0.33356	1	14201	14201		2.3027	0.4585	1	739620			23332	13519	15427	15580	31502	31502					0.01998291402742325
VYGCYPGP	8	Unmodified	_VYGCYPGP_					0	0	0		nc|ENSG00000123358|P22736-3|NR4A1;ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-3|NR4A1	nc|ENSG00000123358|P22736-3|NR4A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	428.1887512207031	2	428.188914	854.363275	0.44493	0.00019052	-1.6355	-0.0007003	-1.1906	-0.00050978	428.188565280329	87.306	0.57942	87.306	87.024	87.603	0					57	22	4	0	0	0	0.53771	1	21716	21716		2.8892	0.58649	1	1212500			23333	2214	15428	15581	31503	31503					-0.0697317985417385
VYGDFQEAF	9	Unmodified	_VYGDFQEAF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2403564453125	2	538.24019	1074.46583	0.47438	0.00025533	1.8681	0.0010055	2.3425	0.0012608	538.2402079939882	68.435	1.0368	68.435	68.095	69.132	0					64	37	3	0	0	0	0.032194	1	15942	15942		49.554	18.918	1	271020			23334	1778	15429	15582	31504	31504					-0.06842815581717332
VYGDFQEAF	9	Unmodified	_VYGDFQEAF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.240966796875	2	538.24019	1074.46583	0.58602	0.00031542	1.6079	0.00086544	2.1939	0.0011809	538.2401923500045	68.353	1.0202	68.417	68.089	69.109	0.063507					71	38	3	0	0	0	0.032194	1	15747	15747		49.554	18.918	1	243740			23335	1778	15429	15582	31505	31505					-0.06842815581717332
VYGDLVDKQY	10	Unmodified	_VYGDLVDKQY_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.300048828125	2	600.300778	1198.587	-0.4469	-0.00026827	-0.18607	-0.0001117	-0.63297	-0.00037997	600.3006297503797	41.341	0.41214	41.341	41.197	41.609	0					19	14	2	0	0	0	0.45794	1	7709	7709		3.2813	0.28607	1	62353	+		23336	11051	15430	15583	31506	31506					-0.004346129390341957
VYGDLVDKQY	10	Unmodified	_VYGDLVDKQY_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	600.300778	1198.587	-0.4469	-0.00026827	-0.18607	-0.0001117	-0.63297	-0.00037997	600.3006297503797	41.341	0.41214	41.341	41.197	41.609	0	-0.013812	-8.5485E-05	NaN	3.2813	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62353	+		23337	11051	15430	15583							-0.004346129390341957
VYGDLVDKQY	10	Unmodified	_VYGDLVDKQY_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	600.300778	1198.587	-0.29842	-0.00017914	0.22632	0.00013586	-0.072098	-4.328E-05	600.3004907006123	41.278	0.27254	41.368	41.241	41.513	0.089764	0.013812	0.00040964	NaN	3.2813	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40194	+		23338	11051	15430	15583							-0.004346129390341957
VYGELCNECW	10	Unmodified	_VYGELCNECW_					0	0	0			REV__ENSG00000106780|ENST00000373930|MEGF9	REV__ENSG00000106780|ENST00000373930|MEGF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.83367919921875	3	405.83182	1214.47363	0.50803	0.00020617	1.5238	0.0006184	2.0318	0.00082458	405.8334832013377	102.01	0.50624	102.01	101.81	102.31	0					109	36	5	0	0	0	0.44469	1	26164	26164		5.7834	0.48655	1	265480	+		23339	8582	15431	15584	31507	31507					-0.12502747648113655
VYGELCNECW	10	Unmodified	_VYGELCNECW_					0	0	0			REV__ENSG00000106780|ENST00000373930|MEGF9	REV__ENSG00000106780|ENST00000373930|MEGF9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	405.83182	1214.47363	0.50803	0.00020617	1.5238	0.0006184	2.0318	0.00082458	405.8334832013377	102.01	0.50624	102.01	101.81	102.31	0	0.010058	0.00045668	NaN	5.7834	109	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265480	+		23340	8582	15431	15584							-0.12502747648113655
VYGELCNECW	10	Unmodified	_VYGELCNECW_					0	0	0			REV__ENSG00000106780|ENST00000373930|MEGF9	REV__ENSG00000106780|ENST00000373930|MEGF9	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	405.83182	1214.47363	0.23587	9.5722E-05	0.89631	0.00036375	1.1322	0.00045947	405.83359899706323	101.95	0.42365	101.99	101.81	102.23	0.042656	-0.010058	-0.00030728	NaN	5.7834	124	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189890	+		23341	8582	15431	15584							-0.12502747648113655
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	536.782470703125	2	536.782359	1071.55016	0.36808	0.00019758	0.28761	0.00015438	0.65569	0.00035197	536.7822468539291	61.718	1.3484	61.718	61.534	62.883	0					114	59	3	0	0	0	3.5265E-09	3	13885	13844;13885;13930		170.55	126.14	1	1605300			23342	6094	15432	15585	31508;31509;31510	31509					0.017251800257099603
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	536.7822265625	2	536.782359	1071.55016	0.51839	0.00027826	-0.02309	-1.2394E-05	0.4953	0.00026587	536.7820996432223	61.56	0.94334	61.634	61.507	62.451	0.073421					104	47	3	0	0	0	4.1078E-06	3	13723	13674;13723;13767		154.46	107.54	1	1504800			23343	6094	15432	15585	31511;31512;31513	31512					0.017251800257099603
VYGFPVNQL	9	Unmodified	_VYGFPVNQL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7769165039062	2	518.776742	1035.53893	0.40086	0.00020796	0.064298	3.3357E-05	0.46516	0.00024131	518.77664959686	74.46	0.55402	74.509	74.342	74.896	0.048546					44	19	3	0	0	0	0.0042188	1	17622	17622		101.72	74.838	1	471380			23344	3194	15433	15586	31514	31514					0.022583579315551106
VYGFPVNQLF	10	Unmodified	_VYGFPVNQLF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3109130859375	2	592.310949	1182.60735	0.20935	0.000124	0.56191	0.00033283	0.77126	0.00045683	592.3108179860615	89.963	0.38457	89.963	89.716	90.101	0					28	14	3	0	0	0	0.011745	1	22476	22476		74.929	55.672	1	338950			23345	3194	15434	15587	31515	31515					0.023346025114051372
VYGFPVNQLF	10	Unmodified	_VYGFPVNQLF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.310546875	2	592.310949	1182.60735	0.14954	8.8573E-05	0.85277	0.00050511	1.0023	0.00059368	592.3108413124365	89.883	0.35665	89.917	89.703	90.059	0.034058					26	13	3	0	0	0	0.01986	1	22307	22307		68.081	48.824	1	411910			23346	3194	15434	15587	31516	31516					0.023346025114051372
VYGFQWRHF	9	Unmodified	_VYGFQWRHF_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.2678833007812	2	620.306532	1238.59851	0.052446	3.2533E-05	0.29305	0.00018178	0.34549	0.00021431	620.3063828413376	55.628	0.34452	55.628	55.497	55.841	0					18	11	2	0	0	0	0.16944	1	12051	12051		30.637	15.388	1	82269			23347	4675	15435	15588	31517	31517					-0.011243263343885701
VYGFQWRHF	9	Unmodified	_VYGFQWRHF_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.87335205078125	3	413.873447	1238.59851	0.18218	7.54E-05	-0.12982	-5.3731E-05	0.052357	2.1669E-05	413.8733832061439	55.637	0.6515	55.702	55.491	56.142	0.065128					72	23	4	0	0	0	0.074645	1	11883	11883		28.495	28.495	1	998690			23348	4675	15435	15588	31518	31518					-0.011243263343885701
VYGFQWRHF	9	Unmodified	_VYGFQWRHF_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3076782226562	2	620.306532	1238.59851	0.07056	4.3769E-05	0.085922	5.3298E-05	0.15648	9.7067E-05	620.3065783057716	55.638	0.31955	55.704	55.548	55.868	0.065128					21	11	2	0	0	0	0.2229	1	11872	11872		19.257	5.3509	1	114630			23349	4675	15435	15588	31519	31519					-0.011243263343885701
VYGFQWRHF	9	Unmodified	_VYGFQWRHF_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	413.873447	1238.59851	0.63468	0.00026268	-0.56355	-0.00023324	0.07113	2.9439E-05	413.873208232815	55.653	0.6527	55.653	55.441	56.094	0	-0.024636	-0.00030015	NaN	28.495	69	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674290			23350	4675	15435	15588							-0.011243263343885701
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2901611328125	2	527.290017	1052.56548	0.24631	0.00012988	1.0165	0.00053601	1.2628	0.00066589	527.2902598416947	56.282	1.0337	56.282	56.094	57.127	0					96	38	5	0	0	0	0.005983	5	12249	12203;12249;12299;12358;12364		79.596	43.469	1	1092700			23351	4223	15436	15589	31520;31521;31522;31523;31524	31521					0.04130046822888289
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2901000976562	2	527.290017	1052.56548	0.1446	7.6244E-05	0.68689	0.00036219	0.83149	0.00043844	527.2903160921605	56.23	0.92064	56.296	56.093	57.014	0.066452					79	34	4	0	0	0	0.0043591	4	12100	12050;12100;12169;12189		96.367	56.417	1	950810			23352	4223	15436	15589	31525;31526;31527;31528	31526					0.04130046822888289
VYGFWKKRH	9	Unmodified	_VYGFWKKRH_					0	0	0		ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.5708923339844	3	407.561092	1219.66145	0.055499	2.2619E-05	2.8355	0.0011557	2.891	0.0011783	407.5622336815574	60.966	0.38398	61.04	60.851	61.235	0.073421					16	12	2	0	0	0	0.29105	1	13539	13539		4.897	0	1	68245			23353	1748	15437	15590	31529	31529					0.060402394536367865
VYGIFNSVLF	10	Unmodified	_VYGIFNSVLF_					0	0	0		ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;nc|ENSG00000142920|Q96A70-5|AZIN2;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;ADC-ISOC1|1|fusion	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.8134155273438	2	579.813325	1157.6121	0.55864	0.00032391	-0.21024	-0.0001219	0.3484	0.00020201	579.8130662250084	96.996	0.61987	96.996	96.768	97.387	0					76	30	3	0	0	0	0.0072434	3	24663	24620;24663;24724		78.728	69.105	1	878630			23354	3125	15438	15591	31530;31531;31532	31531					0.039594866541847296
VYGIFNSVLF	10	Unmodified	_VYGIFNSVLF_					0	0	0		ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;nc|ENSG00000142920|Q96A70-5|AZIN2;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;ADC-ISOC1|1|fusion	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.8135375976562	2	579.813325	1157.6121	0.64722	0.00037527	-0.28749	-0.00016669	0.35973	0.00020858	579.8130566798148	96.934	0.57688	96.973	96.802	97.379	0.039772					68	27	3	0	0	0	5.9374E-05	2	24456	24456;24500		103.35	69.251	1	981230			23355	3125	15438	15591	31533;31534	31533					0.039594866541847296
VYGIFSTYGF	10	Unmodified	_VYGIFSTYGF_					0	0	0			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|77|1|anti-sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|77|1|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7918701171875	2	577.281857	1152.54916	0.33531	0.00019357	-0.639	-0.00036888	-0.30369	-0.00017532	577.2814572669893	90.848	0.56823	90.848	90.495	91.063	0					32	20	2	0	0	0	0.30149	1	22780	22780		20.454	0	1	403520	+		23356	12695	15439	15592	31535	31535					-0.021010791338767376
VYGIQVNSL	9	Unmodified	_VYGIQVNSL_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7348327636719	2	496.7742	991.533846	0.43738	0.00021728	-0.086665	-4.3053E-05	0.35072	0.00017423	496.7740916574082	57.552	0.52624	57.621	57.393	57.919	0.068375					36	19	3	0	0	0	0.30005	1	12426	12426		6.7232	0.51738	1	235430	+		23357	13000	15440	15593	31536	31536					0.037740540689469526
VYGIRLEHF	9	Unmodified	_VYGIRLEHF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.30810546875	2	567.308741	1132.60293	0.12256	6.953E-05	-0.083344	-4.7282E-05	0.039217	2.2248E-05	567.3086526223486	52.143	0.59024	52.143	51.937	52.527	0					41	20	3	0	0	0	0.15837	1	10964	10964		34.932	18.783	1	199510			23358	3142	15441	15594	31537	31537					0.04193138088521664
VYGIRLEHF	9	Unmodified	_VYGIRLEHF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.308349609375	2	567.308741	1132.60293	0.21915	0.00012433	-0.064853	-3.6792E-05	0.1543	8.7534E-05	567.3085082193373	52.087	0.42307	52.155	51.97	52.393	0.067173					35	16	3	0	0	0	0.17428	1	10808	10808		21.537	10.713	1	214400			23359	3142	15441	15594	31538	31538					0.04193138088521664
VYGKNLKLQ	9	Unmodified	_VYGKNLKLQ_					0	0	0		ENST00000264279.9_1_2:203139863-203142674:+|nuORF	ENST00000264279.9_1_2:203139863-203142674:+|nuORF	ENST00000264279.9_1_2:203139863-203142674:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8170776367188	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.689	1	81.689	81.189	82.189	0								0	0	0	0.27427	1	19978	19978		4.3292	1.44	1				23360	5886	15442	15595	31539	31539					0.09498308748311501
VYGLYTSFF	9	Unmodified	_VYGLYTSFF_					0	0	0		SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant;ENSG00000155850|ENST00000286298|SLC26A2	SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant	SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2978515625	2	548.771126	1095.5277	0.41908	0.00022998	-1.3912	-0.00076344	-0.9721	-0.00053346	548.7715644986888	88.77	0.83831	88.802	88.463	89.301	0.032265					69	34	3	0	0	0	0.2446	1	22048	22048		11.64	3.7301	1	206210			23361	3597	15443	15596	31540	31540					-0.016244641625689837
VYGNVARYF	9	Unmodified	_VYGNVARYF_					0	0	0		ENST00000552949.1_1_12:69753653-69756720:+|nuORF;ENSG00000127337|ENST00000247843|YEATS4	ENST00000552949.1_1_12:69753653-69756720:+|nuORF	ENST00000552949.1_1_12:69753653-69756720:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2720947265625	2	544.779816	1087.54508	0.31739	0.00017291	0.9269	0.00050496	1.2443	0.00067787	544.7800022507076	52.451	0.2198	52.518	52.412	52.632	0.067173					11	7	2	0	0	0	0.28587	1	10938	10938		8.5933	1.304	1	29927			23362	2362	15444	15597	31541	31541					0.004808761630556546
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.263916015625	2	504.263468	1006.51238	0.36104	0.00018206	0.26792	0.0001351	0.62895	0.00031716	504.26359776650526	68.627	0.83684	68.627	68.267	69.104	0					80	29	4	0	0	0	0.0045534	2	15972	15972;16011		88.954	48.997	1	1292800			23363	2513	15445	15598	31542;31543	31542					0.009386690402379827
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.2636413574219	2	504.263468	1006.51238	0.29321	0.00014785	0.30858	0.00015561	0.60179	0.00030346	504.2636111558893	68.525	0.97958	68.589	68.129	69.109	0.063507					92	36	4	0	0	0	0.0046499	2	15848	15785;15848		85.272	47.298	1	2051900			23364	2513	15445	15598	31544;31545	31545					0.009386690402379827
VYGPNCQY	8	Unmodified	_VYGPNCQY_					0	0	0			REV__ENSG00000183117|ENST00000635120|CSMD1	REV__ENSG00000183117|ENST00000635120|CSMD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.7846374511719	2	472.202553	942.390553	0.29853	0.00014096	-3.7497	-0.0017706	-3.4512	-0.0016297	472.20082609996564	54.01	0.25598	54.01	53.813	54.069	0					11	8	2	0	0	0	0.3576	1	11542	11542		5.7604	0	1	50714	+		23365	10588	15446	15599	31546	31546					-0.08294696313794248
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.2633056640625	2	486.263468	970.512382	0.12787	6.218E-05	-0.070661	-3.436E-05	0.057211	2.782E-05	486.2633518028552	47.821	0.45264	47.821	47.707	48.159	0					36	15	3	0	0	0	0.0093024	2	9658	9658;9704		69.338	29.389	1	186150			23366	3578	15447	15600	31547;31548	31547					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2631530761719	2	486.263468	970.512382	0.34498	0.00016775	-0.36257	-0.00017631	-0.017593	-8.5549E-06	486.2631542717604	47.784	0.45129	47.864	47.663	48.114	0.080029					35	16	3	0	0	0	0.010553	2	9506	9506;9555		65.474	25.524	1	147550			23367	3578	15447	15600	31549;31550	31549					0.025946690402406603
VYGTIFLTF	9	Unmodified	_VYGTIFLTF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7894287109375	2	530.789318	1059.56408	0.44557	0.0002365	0.058858	3.1241E-05	0.50443	0.00026775	530.7893326992822	94.125	0.65044	94.125	93.979	94.63	0					62	32	3	0	0	0	0.0043406	3	23778	23778;23821;23862		97.075	32.838	1	300390			23368	2234	15448	15601	31551;31552;31553	31551					0.03668412734123194
VYGTIFLTF	9	Unmodified	_VYGTIFLTF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7894897460938	2	530.789318	1059.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.058	1	94.096	93.596	94.596	0.038086								0	0	0	0.078412	1	23581	23581		39.957	7.6518	1				23369	2234	15448	15601	31554	31554					0.03668412734123194
VYGTIFLTF	9	Unmodified	_VYGTIFLTF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7894287109375	2	530.789318	1059.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.206	1	94.244	93.744	94.744	0.038086								0	0	0	0.017425	1	23624	23624		64.236	18.215	1				23370	2234	15448	15601	31555	31555					0.03668412734123194
VYGTIFLTF	9	Unmodified	_VYGTIFLTF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7891845703125	2	530.789318	1059.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.367	1	94.405	93.905	94.905	0.038086								0	0	0	0.05151	1	23673	23673		48.346	8.3885	1				23371	2234	15448	15601	31556	31556					0.03668412734123194
VYGTIFLTF	9	Unmodified	_VYGTIFLTF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.790771484375	2	530.789318	1059.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.507	1	94.545	94.045	95.045	0.038086								0	0	0	0.2428	1	23716	23716		10.824	0	1				23372	2234	15448	15601	31557	31557					0.03668412734123194
VYGTKWEF	8	Unmodified	_VYGTKWEF_					0	0	0		ENST00000523243.5_1_8:135490727-135577256:-|nuORF;nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT	ENST00000523243.5_1_8:135490727-135577256:-|nuORF	ENST00000523243.5_1_8:135490727-135577256:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2543334960938	2	515.255643	1028.49673	0.39224	0.0002021	-1.9931	-0.0010269	-1.6008	-0.00082484	515.2545014863047	68.538	0.56814	68.601	68.359	68.927	0.063507					45	21	3	0	0	0	0.23148	1	15790	15790		39.957	5.8549	1	432060			23373	703	15449	15602	31558	31558					-0.016376174768311103
VYGVFSIAEF	10	Unmodified	_VYGVFSIAEF_					0	0	0		ENST00000497856.6_1_5:112228472-112256990:-|nuORF;nc|ENSG00000129625|Q00765-2|REEP5;ENSG00000129625|ENST00000379638|REEP5	ENST00000497856.6_1_5:112228472-112256990:-|nuORF	ENST00000497856.6_1_5:112228472-112256990:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2893676757812	2	566.289682	1130.56481	0.26936	0.00015254	-0.59118	-0.00033478	-0.32182	-0.00018224	566.2891262102341	90.9	0.49951	90.9	90.683	91.183	0					50	17	4	0	0	0	5.3649E-05	1	22798	22798		108	29.269	1	1177800			23374	2434	15450	15603	31559	31559					0.00475207383169618
VYGVFSIAEF	10	Unmodified	_VYGVFSIAEF_					0	0	0		ENST00000497856.6_1_5:112228472-112256990:-|nuORF;nc|ENSG00000129625|Q00765-2|REEP5;ENSG00000129625|ENST00000379638|REEP5	ENST00000497856.6_1_5:112228472-112256990:-|nuORF	ENST00000497856.6_1_5:112228472-112256990:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2893676757812	2	566.289682	1130.56481	0.020104	1.1385E-05	-0.32769	-0.00018557	-0.30759	-0.00017419	566.289221349684	90.838	0.48581	90.874	90.683	91.169	0.035446					60	18	4	0	0	0	3.8296E-05	2	22616	22616;22662		120.45	52.512	1	1016200			23375	2434	15450	15603	31560;31561	31560					0.00475207383169618
VYHDMSIDSPM	11	Unmodified	_VYHDMSIDSPM_					0	0	0		nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	647.3276977539062	2	647.775756	1293.53696	0.49867	0.00032303	1.3356	0.00086515	1.8342	0.0011882	647.7753584669169	69.798	0.78012	69.798	69.545	70.325	0					48	27	3	0	0	0	0.3095	1	16331	16331		13.042	0	1	224380			23376	4854	15451	15604	31562	31562					-0.0980680693087379
VYHELNQPFQ	10	Unmodified	_VYHELNQPFQ_					0	0	0		ENST00000433644.2_2_9:98178049-98189049:-|nuORF	ENST00000433644.2_2_9:98178049-98189049:-|nuORF	ENST00000433644.2_2_9:98178049-98189049:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.2691040039062	2	637.811845	1273.60914	0.45485	0.00029011	-0.32237	-0.00020561	0.13248	8.4495E-05	637.8115675129005	64.549	0.78391	64.549	64.328	65.112	0					55	28	3	0	0	0	0.31803	1	14690	14690		3.2813	0.28607	1	245470			23377	6496	15452	15605	31563	31563					-0.016723884706152603
VYHHHHHH	8	Unmodified	_VYHHHHHH_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000078399|ENST00000343483|HOXA9	ENSG00000196557|ENST00000348261|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2732543945312	2	552.255166	1102.49578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.391	1	82.391	81.891	82.891	0								0	0	0	0.38822	1	20191	20191		6.3541	0.14832	1				23378	5234	15453	15606	31564	31564					-0.05136974282504525
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant;nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8006591796875	2	555.800749	1109.58694	0.42043	0.00023368	-0.17719	-9.8482E-05	0.24324	0.00013519	555.8004803054076	38.648	0.68737	38.648	38.396	39.083	0					44	25	3	0	0	0	0.21398	1	6872	6872		16.942	6.1184	1	78415			23379	1148	15454	15607	31565	31565					0.03653431851603273
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant;nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8007202148438	2	555.800749	1109.58694	0.60846	0.00033818	-0.54992	-0.00030564	0.05854	3.2537E-05	555.8002079169256	38.529	0.56108	38.616	38.297	38.858	0.086884					36	20	3	0	0	0	0.12809	1	6709	6709		26.884	12.045	1	67543			23380	1148	15454	15607	31566	31566					0.03653431851603273
VYHHRCHTGEK	11	Unmodified	_VYHHRCHTGEK_					0	0	0		ENSG00000180257|ENST00000444460|ZNF816	ENSG00000180257|ENST00000444460|ZNF816	ENSG00000180257|ENST00000444460|ZNF816	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.8847351074219	3	456.219289	1365.63604	0.24436	0.00011148	-0.092428	-4.2167E-05	0.15193	6.9312E-05	456.2192216654975	104.51	0.27032	104.51	104.34	104.61	0					40	25	2	0	0	0	0.311	1	26863	26863		0.50596	0	1	186560			23381	4802	15455	15608	31567	31567					-0.03215603131093303
VYHILKVLF	9	Unmodified	_VYHILKVLF_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7853393554688	2	566.349877	1130.6852	0.49522	0.00028047	-0.24964	-0.00014139	0.24558	0.00013908	566.3497345841358	64.562	0.87074	64.562	64.382	65.253	0					63	31	3	0	0	0	0.10508	1	14795	14795		42.095	31.271	1	490820			23382	754	15456	15609	31568	31568					0.1250866016746386
VYHILKVLF	9	Unmodified	_VYHILKVLF_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7854614257812	2	566.349877	1130.6852	0.39538	0.00022392	-0.17369	-9.837E-05	0.22169	0.00012555	566.3497402344092	64.475	0.81411	64.544	64.374	65.188	0.068916					59	30	3	0	0	0	0.10508	1	14639	14639		42.095	32.711	1	375020			23383	754	15456	15609	31569	31569					0.1250866016746386
VYHPRLFR	8	Unmodified	_VYHPRLFR_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.3108520507812	2	544.311618	1086.60868	0.31457	0.00017122	-1.1937	-0.00064976	-0.87917	-0.00047854	544.3106570528305	50.888	0.41777	50.957	50.792	51.21	0.069874					26	15	2	0	0	0	0.53345	1	10461	10461		5.7604	0.52976	1	78263	+		23384	10072	15457	15610	31570	31570					0.06884281390853175
VYHQALVWSS	10	Unmodified	_VYHQALVWSS_					0	0	0			REV__nc|ENSG00000258597|P20848|SERPINA2	REV__nc|ENSG00000258597|P20848|SERPINA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3218994140625	2	595.303655	1188.59276	0.35247	0.00020983	-4.1124	-0.0024481	-3.7599	-0.0022383	595.3013479248981	68.096	0.33865	68.16	68.045	68.383	0.063507					22	12	2	0	0	0	0.34138	1	15727	15727		18.146	1.0335	1	165260	+		23385	12905	15458	15611	31571	31571					0.006005303632719006
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.824462890625	2	546.824224	1091.63389	-0.38446	-0.00021023	0.27538	0.00015058	-0.10908	-5.9645E-05	546.8245947440447	41.073	0.49873	41.073	40.881	41.38	0					43	17	3	0	0	0	0.088609	2	7592	7592;7636		34.932	15.675	1	321820			23386	1797	15459	15612	31572;31573	31572					0.09174291402769086
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8244018554688	2	546.824224	1091.63389	-0.22284	-0.00012186	0.55398	0.00030293	0.33114	0.00018107	546.8244650863127	40.969	0.55098	41.058	40.877	41.428	0.089645					43	19	4	0	0	0	0.026931	2	7442	7442;7483		53.317	27.049	1	296380			23387	1797	15459	15612	31574;31575	31574					0.09174291402769086
VYIEAAIRF	9	Unmodified	_VYIEAAIRF_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;ENST00000470035.1_1_1:25780757-25784897:+|nuORF	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.3062133789062	2	541.305667	1080.59678	0.71576	0.00038745	0.099705	5.3971E-05	0.81547	0.00044142	541.3056916041472	65.625	0.98832	65.625	65.286	66.274	0					96	35	4	0	0	0	0.0097877	3	15047	15047;15097;15146		67.838	36.332	1	882690			23388	5453	15460	15613	31576;31577;31578	31576					0.059706198569983826
VYIEAAIRF	9	Unmodified	_VYIEAAIRF_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;ENST00000470035.1_1_1:25780757-25784897:+|nuORF	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.3060302734375	2	541.305667	1080.59678	0.61522	0.00033302	0.20826	0.00011273	0.82347	0.00044575	541.305731973713	65.573	0.88879	65.64	65.45	66.339	0.066872					92	34	4	0	0	0	0.0081278	3	14890	14890;14933;14986		72.968	38.566	1	1533700			23389	5453	15460	15613	31579;31580;31581	31579					0.059706198569983826
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3139038085938	2	561.313689	1120.61282	-0.077383	-4.3436E-05	0.72908	0.00040924	0.6517	0.00036581	561.3140469351646	30.896	0.3405	30.896	30.779	31.119	0					34	15	3	0	0	0	0.24021	1	4559	4559		13.906	3.0821	1	39946			23390	682	15461	15614	31582	31582					0.05734281303239186
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000549472.1_1_12:56480319-56481575:+|nuORF	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3135375976562	2	561.313689	1120.61282	0.015337	8.609E-06	0.48643	0.00027304	0.50177	0.00028165	561.3139037615722	30.886	0.3327	30.96	30.828	31.161	0.07378					30	15	3	0	0	0	0.13341	1	4438	4438		26.268	8.1218	1	44958			23391	682	15461	15614	31583	31583					0.05734281303239186
VYIELTLPQF	10	Unmodified	_VYIELTLPQF_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.8108520507812	2	611.839539	1221.66453	0.19699	0.00012052	-0.26616	-0.00016285	-0.069178	-4.2326E-05	611.8391906036312	94.93	0.44405	94.93	94.63	95.074	0					30	16	2	0	0	0	0.18233	1	23991	23991		53.833	28.433	1	472030			23392	3413	15462	15615	31584	31584					0.06256024997128407
VYIELTLPQF	10	Unmodified	_VYIELTLPQF_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.8108520507812	2	611.839539	1221.66453	0.2004	0.00012261	-0.15733	-9.6263E-05	0.043064	2.6348E-05	611.8391985656091	94.816	0.40331	94.854	94.639	95.042	0.038094					46	16	3	0	0	0	0.24416	1	23811	23811		41.84	16.44	1	355100			23393	3413	15462	15615	31585	31585					0.06256024997128407
VYIGSTLSYF	10	Unmodified	_VYIGSTLSYF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-7|P2RX7;nc|ENSG00000089041|Q99572-6|P2RX7;ENST00000539606.5_1_12:121592718-121615069:+|nuORF;nc|ENSG00000089041|Q99572-4|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7496337890625	2	575.294965	1148.57538	0.81661	0.00046979	-1.3843	-0.0007964	-0.56772	-0.00032661	575.2946654287606	80.439	0.50438	80.439	80.197	80.702	0					36	17	3	0	0	0	0.095176	1	19619	19619		65.235	39.836	1	196080			23394	1023	15463	15616	31586	31586					0.007031900376205158
VYIGSTLSYF	10	Unmodified	_VYIGSTLSYF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-7|P2RX7;nc|ENSG00000089041|Q99572-6|P2RX7;ENST00000539606.5_1_12:121592718-121615069:+|nuORF;nc|ENSG00000089041|Q99572-4|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7498779296875	2	575.294965	1148.57538	0.6801	0.00039126	-2.1619	-0.0012438	-1.4818	-0.0008525	575.2942696331943	80.475	0.75424	80.498	80.128	80.882	0.023605					53	26	3	0	0	0	0.24416	1	19449	19449		41.84	9.5341	1	220940			23395	1023	15463	15616	31587	31587					0.007031900376205158
VYIGVHVPF	9	Unmodified	_VYIGVHVPF_					0	0	0		ENST00000428005.1_1_3:27465485-27525617:-|nuORF;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	ENST00000428005.1_1_3:27465485-27525617:-|nuORF	ENST00000428005.1_1_3:27465485-27525617:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8184204101562	2	515.789653	1029.56475	0.43568	0.00022472	0.60764	0.00031342	1.0433	0.00053813	515.7897849146325	68.101	0.40411	68.101	67.944	68.348	0					17	14	2	0	0	0	0.237	1	15866	15866		14.582	3.4672	1	71475			23396	511	15464	15617	31588	31588					0.051152521738458745
VYIHPSSALF	10	Unmodified	_VYIHPSSALF_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7745361328125	2	567.303124	1132.5917	0.1526	8.6571E-05	1.2651	0.00071769	1.4177	0.00080426	567.8056579918637	59.436	1.1928	59.436	59.17	60.363	0					101	45	4	0	0	0	0.25334	1	13179	13179		37.974	12.575	1	451870			23397	717	15465	15618	31589	31589					0.030703159943413993
VYIHPSSALF	10	Unmodified	_VYIHPSSALF_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.303466796875	2	567.303124	1132.5917	0.14677	8.3264E-05	1.4828	0.00084117	1.6295	0.00092443	567.8056788401266	59.356	0.90752	59.428	59.137	60.044	0.072338					83	35	4	0	0	0	0.23678	1	12996	12996		43.858	18.459	1	351600			23398	717	15465	15618	31590	31590					0.030703159943413993
VYIISDKLF	9	Unmodified	_VYIISDKLF_					0	0	0			REV__ENST00000550267.1_1_12:110937089-110937191:-|nuORF	REV__ENST00000550267.1_1_12:110937089-110937191:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7493896484375	2	549.3157	1096.61685	0.79451	0.00043644	-1.4981	-0.00082294	-0.7036	-0.0003865	549.3147632843018	65.972	0.81638	65.972	65.791	66.607	0					73	29	4	0	0	0	0.20845	1	15352	15352		15.847	0	1	1035700	+		23399	12430	15466	15619	31591	31591					0.07240370796921525
VYIIYGMYF	9	Oxidation (M)	_VYIIYGM(Oxidation (M))YF_		VYIIYGM(1)YF		VYIIYGM(56)YF	0	0	1		nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG	nc|ENSG00000103152|P29372-5|MPG	nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.78955078125	2	592.788461	1183.56237	0.70484	0.00041782	0.42759	0.00025347	1.1324	0.00067129	592.7886953435536	84.156	0.25217	84.156	83.99	84.242	0					15	8	2	0	0	0	0.02311	1	20746	20746		56.048	45.224	1	167390			23400	1353	15467	15620	31592	31592		82			-0.022069643461463784
VYIIYGMYF	9	Oxidation (M)	_VYIIYGM(Oxidation (M))YF_					0	0	1		nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG	nc|ENSG00000103152|P29372-5|MPG	nc|ENSG00000103152|P29372-5|MPG	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	592.788461	1183.56237	0.38211	0.00022651	-0.68286	-0.00040479	-0.30075	-0.00017828	592.7884840637913	84.134	0.31781	84.156	83.948	84.266	0.021751	3.4529E-05	-0.00094884	NaN	56.048	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106100			23401	1353	15467	15620				82			-0.022069643461463784
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.3162231445312	2	528.316035	1054.61752	0.18061	9.5417E-05	-0.12897	-6.8139E-05	0.051631	2.7278E-05	528.3160071927186	38.808	2.945	38.808	38.514	41.459	0					232	107	5	0	0	0	0.0016252	5	6940	6897;6940;6981;7028;7073		118.07	59.39	1	2637000			23402	1124	15468	15621	31593;31594;31595;31596;31597	31594					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.316162109375	2	528.316035	1054.61752	0.27231	0.00014387	-0.14883	-7.8629E-05	0.12348	6.5237E-05	528.3159657187881	38.694	2.2529	38.781	38.488	40.741	0.08688					229	87	5	0	0	0	0.0028323	5	6774	6727;6774;6817;6867;6910		110.67	51.996	1	2505100			23403	1124	15468	15621	31598;31599;31600;31601;31602	31599					0.09239210236660256
VYIKLVQTGD	10	Unmodified	_VYIKLVQTGD_					0	0	0			REV__ENSG00000175928|ENST00000319331|LRRN1	REV__ENSG00000175928|ENST00000319331|LRRN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2763671875	2	568.321514	1134.62847	0.21283	0.00012096	2.9675	0.0016865	3.1803	0.0018074	568.322923620985	79.451	0.46475	79.478	79.305	79.769	0.026428					24	16	2	0	0	0	0.31689	1	19155	19155		8.1555	0.8663	1	108630	+		23404	10391	15469	15622	31603	31603					0.06654567820282864
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3037719726562	2	601.303421	1200.59229	0.37789	0.00022723	-0.35624	-0.00021421	0.021649	1.3018E-05	601.303692252082	86.068	2.0459	86.068	85.779	87.825	0					191	81	6	0	0	0	0.12723	3	21294	21294;21341;21382		42.095	5.0209	1	16469000	+		23405	10212	15470	15623	31604;31605;31606	31604					1.651327556828619E-05
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3037109375	2	601.303421	1200.59229	0.53219	0.00032001	-0.51827	-0.00031164	0.013921	8.3707E-06	601.3035417171458	86.046	1.3758	86.071	85.773	87.149	0.025177					161	56	6	0	0	0	0.19659	2	21170	21089;21170		34.102	3.7352	1	13489000	+		23406	10212	15470	15623	31607;31608	31608					1.651327556828619E-05
VYILIDQND	9	Unmodified	_VYILIDQND_					0	0	0			REV__tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	REV__tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.783203125	2	546.782222	1091.54989	-0.42726	-0.00023362	2.0368	0.0011137	1.6095	0.00088006	546.7832187133065	41.223	0.86253	41.223	40.787	41.65	0					50	31	2	0	0	0	0.28587	1	7693	7693		8.5933	2.3875	1	57539	+		23407	13052	15471	15624	31609	31609					0.007777155151870829
VYILKGGYERF	11	Unmodified	_VYILKGGYERF_					0	0	0		nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-2|STYXL1	nc|ENSG00000127952|Q9Y6J8-2|STYXL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	448.9150085449219	3	448.915201	1343.72377	0.32176	0.00014444	-1.2343	-0.0005541	-0.91255	-0.00040966	448.9149195643942	49.733	0.62125	49.733	49.508	50.129	0					73	21	5	0	0	0	0.38054	1	10260	10260		8.7518	0.30748	1	231730			23408	2379	15472	15625	31610	31610					0.06565921011315368
VYILKGGYERF	11	Unmodified	_VYILKGGYERF_					0	0	0		nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-2|STYXL1	nc|ENSG00000127952|Q9Y6J8-2|STYXL1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	448.915201	1343.72377	0.092962	4.1732E-05	-0.16585	-7.4453E-05	-0.07289	-3.2721E-05	448.91497817048014	49.682	0.64819	49.755	49.533	50.181	0.07312	0.01108	0.00027362	NaN	8.7518	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213290			23409	2379	15472	15625							0.06565921011315368
VYILPAAYFW	10	Unmodified	_VYILPAAYFW_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.8319091796875	2	621.831517	1241.64848	-0.065429	-4.0686E-05	0.13816	8.5915E-05	0.072736	4.5229E-05	621.8316318126178	102.21	0.4532	102.21	102.01	102.46	0					58	32	3	0	0	0	0.0022532	3	26202	26202;26208;26266		82.939	64.793	1	154320			23410	455	15473	15626	31611;31612;31613	31611					0.037323635508755615
VYILPAAYFW	10	Unmodified	_VYILPAAYFW_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.831787109375	2	621.831517	1241.64848	0.2059	0.00012804	-0.063325	-3.9377E-05	0.14258	8.8659E-05	621.8313596596222	102.13	0.41225	102.18	102.05	102.46	0.042656					62	29	3	0	0	0	0.078994	1	26040	26040		49.669	36.626	1	106430			23411	455	15473	15626	31614	31614					0.037323635508755615
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.8236694335938	2	552.824224	1103.63389	0.49914	0.00027594	-0.057801	-3.1954E-05	0.44134	0.00024399	552.8241409491145	57.275	0.50423	57.275	57.065	57.569	0					31	17	3	0	0	0	0.047066	1	12539	12539		43.982	22.445	1	162200			23412	4043	15474	15627	31615	31615					0.08622291402753035
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	552.824224	1103.63389	0.59751	0.00033032	-0.74622	-0.00041253	-0.14871	-8.2213E-05	552.8236715757306	57.216	0.43042	57.285	57.092	57.523	0.068375	0.0047482	-0.00040089	NaN	43.982	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109320			23413	4043	15474	15627							0.08622291402753035
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.8084716796875	2	516.808042	1031.60153	0.65509	0.00033856	0.13363	6.906E-05	0.78872	0.00040762	516.8080507494128	92.799	0.88309	92.799	92.552	93.435	0					81	33	3	0	0	0	7.6618E-09	1	23382	23382		162.95	77.594	1	2653200			23414	2966	15475	15628	31616	31616					0.08699503999741864
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.8082275390625	2	516.808042	1031.60153	0.59322	0.00030658	0.39798	0.00020568	0.9912	0.00051226	516.8082716765304	92.783	0.89441	92.821	92.553	93.448	0.037369					78	35	3	0	0	0	0.00038046	1	23218	23218		133.7	59.279	1	4149100			23415	2966	15475	15628	31617	31617					0.08699503999741864
VYINLIAQEL	10	Unmodified	_VYINLIAQEL_					0	0	0			REV__ENST00000372899.5_1_6:42647464-42647548:+|nuORF	REV__ENST00000372899.5_1_6:42647464-42647548:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.7887573242188	2	588.337164	1174.65977	0.28823	0.00016958	2.9198	0.0017179	3.2081	0.0018874	588.3386083243188	90.702	0.17114	90.737	90.657	90.828	0.035446					10	7	2	0	0	0	0.31691	1	22557	22557		7.2892	0.56607	1	51828	+		23416	11614	15476	15629	31618	31618					0.07943140854376907
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2853393554688	2	542.769114	1083.52368	0.23975	0.00013013	-0.27828	-0.00015104	-0.038529	-2.0912E-05	542.7689729619505	59.503	0.43216	59.503	59.308	59.74	0					43	17	3	0	0	0	0.0085356	1	13166	13166		71.708	24.787	1	350720			23417	1092	15477	15630	31619	31619					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2855834960938	2	542.769114	1083.52368	0.2619	0.00014215	-0.15232	-8.2674E-05	0.10959	5.948E-05	542.7689580785603	59.402	0.47778	59.474	59.301	59.779	0.072338					32	18	2	0	0	0	0.0042616	2	13011	13011;13103		100.09	43.549	1	250840			23418	1092	15477	15630	31620;31621	31620					-0.014745536562941197
VYIPCIYVL	9	Unmodified	_VYIPCIYVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2716674804688	2	541.801371	1081.58819	0.38949	0.00021103	0.97909	0.00053047	1.3686	0.0007415	541.8017809853436	96.289	0.84825	96.289	96.002	96.851	0					92	39	3	0	0	0	0.12341	1	24504	24504		36.466	15.595	1	734800			23419	5038	15478	15631	31622	31622					0.05065929896159105
VYIPCIYVL	9	Unmodified	_VYIPCIYVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.802734375	2	541.801371	1081.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.087	1	98.129	97.629	98.629	0.041931								0	0	0	0.2699	1	24811	24811		5.2307	0.47466	1				23420	5038	15478	15631	31623	31623					0.05065929896159105
VYIPCIYVL	9	Unmodified	_VYIPCIYVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2716064453125	2	541.801371	1081.58819	0.47421	0.00025693	0.80894	0.00043829	1.2831	0.00069521	541.8016643801088	96.273	0.87928	96.313	96.037	96.917	0.039772					104	46	3	0	0	0	0.080938	1	24339	24339		45.75	28.663	1	498240			23421	5038	15478	15631	31624	31624					0.05065929896159105
VYIPNKVLI	9	Unmodified	_VYIPNKVLI_					0	0	0		ENST00000503063.5_1_17:48629318-48633020:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	ENST00000503063.5_1_17:48629318-48633020:+|nuORF	ENST00000503063.5_1_17:48629318-48633020:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3184204101562	2	529.83406	1057.65357	0.29494	0.00015627	-1.1504	-0.00060953	-0.85547	-0.00045326	529.833576630358	61.066	0.2954	61.14	61	61.296	0.073421					13	9	2	0	0	0	0.2491	1	13516	13516		8.5933	2.2392	1	40244			23422	367	15479	15632	31625	31625					0.12704667413527204
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	413.583740234375	3	413.583785	1237.72953	0.12085	4.9982E-05	-0.21623	-8.9428E-05	-0.095374	-3.9445E-05	413.5836630719289	37.455	1.2935	37.54	37.299	38.593	0.08448					136	46	5	0	0	0	0.20229	2	6398	6398;6441		35.08	20.674	1	750630			23423	1149	15480	15633	31626;31627	31626					0.12017064313636183
VYIRHLEK	8	Unmodified	_VYIRHLEK_					0	0	0		nc|ENSG00000175267|A6NCI4-3|VWA3A;nc|ENSG00000175267|A6NCI4-4|VWA3A;nc|ENSG00000175267|A6NCI4-2|VWA3A;ENSG00000175267|ENST00000389398|VWA3A	nc|ENSG00000175267|A6NCI4-3|VWA3A	nc|ENSG00000175267|A6NCI4-3|VWA3A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.310791015625	2	529.311284	1056.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.07	1	105.07	104.57	105.57	0								0	0	0	0.38822	1	27056	27056		0.79363	0	1				23424	4621	15481	15634	31628	31628					0.081974419511198
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7720947265625	2	580.772188	1159.52982	0.39352	0.00022855	-0.32481	-0.00018864	0.068714	3.9907E-05	580.7719717585065	37.488	1.0488	37.488	37.283	38.332	0					104	36	5	0	0	0	0.0042542	4	6519	6519;6569;6624;6715		100.37	75.698	1	460010			23425	1437	15482	15635	31629;31630;31631;31632	31629					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7722778320312	2	580.772188	1159.52982	0.47819	0.00027772	-0.38568	-0.00022399	0.092512	5.3728E-05	580.7719881648611	37.38	0.89402	37.464	37.271	38.165	0.084476					79	31	4	0	0	0	0.0053304	2	6399	6352;6399		81.613	56.939	1	521590			23426	1437	15482	15635	31633;31634	31634					-0.043560354247802024
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.77447509765625	2	496.7742	991.533846	0.59532	0.00029574	-0.23619	-0.00011734	0.35913	0.0001784	496.7739829395011	57.624	0.70294	57.624	57.378	58.081	0					48	24	3	0	0	0	0.0081278	2	12620	12620;12673		72.968	36.924	1	316710			23427	1818	15483	15636	31635;31636	31635					0.037740540689469526
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7744140625	2	496.7742	991.533846	0.43738	0.00021728	-0.086665	-4.3053E-05	0.35072	0.00017423	496.7740916574082	57.552	0.52624	57.621	57.393	57.919	0.068375					36	19	3	0	0	0	0.0072241	2	12482	12482;12525		75.761	25.828	1	235430			23428	1818	15483	15636	31637;31638	31637					0.037740540689469526
VYISSLALL	9	Unmodified	_VYISSLALL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.79730224609375	2	489.797143	977.579734	0.26452	0.00012956	0.19077	9.3441E-05	0.4553	0.000223	489.7971397462737	85.923	0.78065	85.923	85.686	86.467	0					81	30	4	0	0	0	1.1297E-12	3	21273	21229;21273;21318		179.23	41.645	1	1975800			23429	1888	15484	15637	31639;31640;31641	31640					0.09004699251181592
VYISSLALL	9	Unmodified	_VYISSLALL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7972412109375	2	489.797143	977.579734	0.39872	0.00019529	-0.023483	-1.1502E-05	0.37523	0.00018379	489.7970447728411	85.865	0.84216	85.89	85.695	86.537	0.025169					82	31	4	0	0	0	1.1297E-12	3	21097	21056;21097;21140		179.23	41.645	1	2043200			23430	1888	15484	15637	31642;31643;31644	31643					0.09004699251181592
VYITGKEVF	9	Unmodified	_VYITGKEVF_					0	0	0		VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7655639648438	2	528.292225	1054.5699	0.17539	9.2655E-05	-1.2265	-0.00064796	-1.0511	-0.00055531	528.2915723212423	52.363	0.36493	52.363	52.219	52.584	0					13	12	2	0	0	0	0.23478	1	11031	11031		17.113	2.5312	1	68497			23431	5332	15485	15638	31645	31645					0.04479511245813228
VYITGKEVFSF	11	Unmodified	_VYITGKEVFSF_					0	0	0		VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	645.3426513671875	2	645.342446	1288.67034	0.32524	0.00020989	0.11105	7.1664E-05	0.43628	0.00028155	645.3424142417038	67.849	0.54234	67.849	67.725	68.267	0					44	20	3	0	0	0	0.052232	2	15757	15757;15806		57.108	27.267	1	268070			23432	5332	15486	15639	31646;31647	31646					0.03755123508813085
VYITGKEVFSF	11	Unmodified	_VYITGKEVFSF_					0	0	0		VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	645.343505859375	2	645.342446	1288.67034	0.45039	0.00029066	-0.31692	-0.00020452	0.13347	8.6133E-05	645.3423013633911	67.852	0.57812	67.916	67.728	68.306	0.063507					35	20	3	0	0	0	0.015967	2	15599	15599;15647		69.338	38.07	1	222170			23433	5332	15486	15639	31648;31649	31648					0.03755123508813085
VYITSFIR	8	Unmodified	_VYITSFIR_					0	0	0		ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2505798339844	2	499.78711	997.559667	0.21486	0.00010738	-0.53505	-0.00026741	-0.32019	-0.00016003	499.78690241275905	52.24	0.49695	52.24	51.961	52.458	0					23	16	2	0	0	0	0.3576	1	11036	11036		8.5933	0.68312	1	70155			23434	3926	15487	15640	31650	31650					0.060789483112330345
VYIYNNNPD	9	Unmodified	_VYIYNNNPD_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2575073242188	2	556.256371	1110.49819	0.53337	0.00029669	1.9184	0.0010671	2.4518	0.0013638	556.2576848748198	83.329	0.4592	83.351	83.1	83.56	0.021751					30	15	3	0	0	0	0.23598	1	20313	20313		15.847	1.0089	1	125680	+		23435	10802	15488	15641	31651	31651					-0.05264028178703484
VYIYTVILAE	10	Unmodified	_VYIYTVILAE_					0	0	0		ENSG00000186952|ENST00000455884|TMEM232;ENST00000512003.7_1_5:109760554-109954135:-|nuORF;ENST00000508571.6_1_5:109668587-109961153:-|nuORF;ENST00000515518.6_1_5:109760554-109978041:-|nuORF;nc|ENSG00000186952|C9JQI7-2|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8030395507812	2	592.33409	1182.65363	0.29344	0.00017381	-4.1021	-0.0024298	-3.8087	-0.002256	592.3316528144692	90.498	0.22028	90.498	90.303	90.523	0					11	7	2	0	0	0	0.31783	1	22603	22603		3.9444	1.6417	1	48176			23436	5101	15489	15642	31652	31652					0.06960622622864321
VYIYTVILAE	10	Unmodified	_VYIYTVILAE_					0	0	0		ENSG00000186952|ENST00000455884|TMEM232;ENST00000512003.7_1_5:109760554-109954135:-|nuORF;ENST00000508571.6_1_5:109668587-109961153:-|nuORF;ENST00000515518.6_1_5:109760554-109978041:-|nuORF;nc|ENSG00000186952|C9JQI7-2|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	592.33409	1182.65363	0.045549	2.698E-05	-2.7935	-0.0016547	-2.7479	-0.0016277	592.3320566227125	90.388	0.20286	90.422	90.377	90.58	0.034065	-0.037854	0.00049779	NaN	3.9444	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47640			23437	5101	15489	15642							0.06960622622864321
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(100)ETF	0	0	1		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.8099365234375	2	625.809925	1249.6053	0.16565	0.00010366	-0.18168	-0.00011369	-0.016029	-1.0031E-05	625.8098075091762	55.9	0.96087	55.9	55.551	56.512	0					64	34	3	0	0	0	0.00022792	2	12078	12078;12123		100.09	80.834	1	394390			23438	1483	15490	15643	31653;31654	31653		90			-0.00952194288697683
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(120)ETF	0	0	1		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.81005859375	2	625.809925	1249.6053	0.20874	0.00013063	-0.014473	-9.0574E-06	0.19427	0.00012158	625.8100800823385	57.546	1.5427	57.546	56.674	58.217	0					157	55	4	0	0	0	4.1612E-05	4	12626	12566;12626;12670;12714		117.76	98.504	1	561430			23439	1483	15490	15643	31655;31656;31657;31658	31656		90			-0.00952194288697683
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(110)ETF	0	0	1		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3112182617188	2	625.809925	1249.6053	0.28958	0.00018122	-0.42631	-0.00026679	-0.13673	-8.5564E-05	625.8097809545823	55.786	0.49596	55.851	55.646	56.142	0.065128					54	17	4	0	0	0	5.4755E-05	2	11967	11921;11967		107.1	91.851	1	386570			23440	1483	15490	15643	31659;31660	31660		90			-0.00952194288697683
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(110)ETF	0	0	1		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.8096923828125	2	625.809925	1249.6053	0.34154	0.00021374	-0.13997	-8.7592E-05	0.20157	0.00012615	625.8098904667348	57.501	1.4745	57.569	56.659	58.134	0.068375					128	55	4	0	0	0	5.4755E-05	6	12453	12398;12404;12453;12500;12545;12595		107.1	87.843	1	441730			23441	1483	15490	15643	31661;31662;31663;31664;31665;31666	31663		90			-0.00952194288697683
VYKAFVMETF	10	Unmodified	_VYKAFVMETF_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.812744140625	2	617.812467	1233.61038	0.032572	2.0124E-05	0.05356	3.309E-05	0.086132	5.3214E-05	617.8127077314274	64.848	0.46584	64.917	64.722	65.188	0.068916					34	17	3	0	0	0	0.020147	1	14707	14707		67.838	50.725	1	220220			23442	1483	15490	15644	31667	31667					0.002921095739111479
VYKDHQTITI	10	Unmodified	_VYKDHQTITI_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	406.55572509765625	3	406.555672	1216.64519	-0.053191	-2.1625E-05	0.54681	0.00022231	0.49362	0.00020069	406.555734066719	35.404	0.7333	35.483	35.142	35.876	0.078831					66	27	3	0	0	0	0.40338	1	5812	5812		11.518	3.0736	1	168340			23443	1743	15491	15645	31668	31668					0.04553068706218255
VYKDLLVLF	9	Unmodified	_VYKDLLVLF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3356323242188	2	555.333893	1108.65323	0.98253	0.00054563	0.57861	0.00032132	1.5611	0.00086695	555.3340389431532	80.359	1.1264	80.359	80.109	81.235	0					103	38	4	0	0	0	0.0068798	3	19593	19550;19593;19645		76.825	30.804	1	2351200			23444	524	15492	15646	31669;31670;31671	31670					0.10325247693640449
VYKDLLVLF	9	Unmodified	_VYKDLLVLF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.33447265625	2	555.333893	1108.65323	0.90696	0.00050366	0.41435	0.0002301	1.3213	0.00073377	555.3339965224092	80.367	1.1736	80.391	80.157	81.331	0.023605					106	41	5	0	0	0	0.0043591	3	19436	19386;19436;19488		96.367	38.895	1	1962300			23445	524	15492	15646	31672;31673;31674	31673					0.10325247693640449
VYKDSFELKF	10	Unmodified	_VYKDSFELKF_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.89202880859375	3	425.892173	1274.65469	0.69432	0.00029571	-0.48049	-0.00020463	0.21384	9.1071E-05	425.89190346736905	55.263	0.48486	55.263	55.04	55.525	0					45	17	3	0	0	0	0.044415	2	11904	11904;11952		59.177	46.304	1	387720			23446	2989	15493	15647	31675;31676	31675					0.028348369917466698
VYKDSFELKF	10	Unmodified	_VYKDSFELKF_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.89215087890625	3	425.892173	1274.65469	0.33636	0.00014325	-0.032879	-1.4003E-05	0.30348	0.00012925	425.8920544006679	55.212	0.61443	55.278	55.032	55.646	0.065128					65	23	4	0	0	0	0.031311	2	11754	11754;11803		62.78	49.165	1	302400			23447	2989	15493	15647	31677;31678	31677					0.028348369917466698
VYKEEHPF	8	Unmodified	_VYKEEHPF_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2471313476562	2	524.758549	1047.50255	0.18859	9.8966E-05	-1.2444	-0.00065301	-1.0558	-0.00055404	524.7582792145882	37.572	0.71841	37.657	37.397	38.116	0.084476					45	24	3	0	0	0	0.48651	2	6370	6370;6419		14.582	3.587	1	29383			23448	4385	15494	15648	31679;31680	31679					-0.019305189651504406
VYKNYQFI	8	Unmodified	_VYKNYQFI_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.783935546875	2	537.784567	1073.55458	0.81569	0.00043866	-2.0902	-0.0011241	-1.2745	-0.00068541	537.7832807567503	80.035	0.44241	80.035	79.815	80.257	0					32	14	3	0	0	0	0.38286	1	19460	19460		28.173	7.302	1	661930	+		23449	7939	15495	15649	31681	31681					0.020746444486121618
VYKNYQFI	8	Unmodified	_VYKNYQFI_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7835083007812	2	537.784567	1073.55458	0.70371	0.00037845	-1.8462	-0.00099284	-1.1425	-0.0006144	537.7834983149368	80.011	0.61258	80.037	79.851	80.464	0.026436					38	21	3	0	0	0	0.3056	1	19318	19318		34.187	11.039	1	869540	+		23450	7939	15495	15649	31682	31682					0.020746444486121618
VYKNYQFI	8	Unmodified	_VYKNYQFI_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	537.784567	1073.55458	0.81569	0.00043866	-2.0902	-0.0011241	-1.2745	-0.00068541	537.7832807567503	80.035	0.44241	80.035	79.815	80.257	0	-0.0010924	-0.00010722	NaN	34.187	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	661930	+		23451	7939	15495	15649							0.020746444486121618
VYKNYQFI	8	Unmodified	_VYKNYQFI_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	537.784567	1073.55458	0.70371	0.00037845	-1.8462	-0.00099284	-1.1425	-0.0006144	537.7834983149368	80.011	0.61258	80.037	79.851	80.464	0.026436	0.0010924	0.00015523	NaN	34.187	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869540	+		23452	7939	15495	15649							0.020746444486121618
VYKPAGVAPGC	11	Unmodified	_VYKPAGVAPGC_					0	0	0			REV__ENST00000488261.6_3_10:135269754-135270707:+|nuORF	REV__ENST00000488261.6_3_10:135269754-135270707:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2789306640625	2	531.276052	1060.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.37	1	102.41	101.91	102.91	0.040916								0	0	0	0.33362	1	26104	26104		2.9952	0.69251	1		+		23453	10999	15496	15650	31683	31683					0.00970400571168284
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7774047851562	2	546.777274	1091.53999	0.28389	0.00015522	-1.7749	-0.00097046	-1.491	-0.00081523	546.7768595436421	37.197	0.7575	37.197	36.942	37.7	0					58	28	3	0	0	0	0.12214	1	6437	6437		27.629	17.555	1	85557			23454	4091	15497	15651	31684	31684					-0.002114276995371256
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7779541015625	2	546.777274	1091.53999	0.30163	0.00016492	-1.7687	-0.00096707	-1.467	-0.00080215	546.7769901440987	37.068	0.65096	37.153	36.947	37.598	0.084476					55	23	3	0	0	0	0.13341	1	6269	6269		26.268	11.43	1	109890			23455	4091	15497	15651	31685	31685					-0.002114276995371256
VYKRYQMVI	9	Unmodified	_VYKRYQMVI_					0	0	0		ENSG00000107669|ENST00000224652|ATE1	ENSG00000107669|ENST00000224652|ATE1	ENSG00000107669|ENST00000224652|ATE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.333984375	2	600.333901	1198.65325	0.34927	0.00020968	0.15978	9.5921E-05	0.50905	0.0003056	600.3338160642502	88.125	1.9043	88.155	87.237	89.141	0.030037					139	74	3	0	0	0	0.3182	1	21740	21740		4.3292	4.3292	1	928050			23456	1560	15498	15652	31686	31686					0.06186924422013362
VYKSSVEMAI	10	Unmodified	_VYKSSVEMAI_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7826538085938	2	563.794275	1125.574	0.45436	0.00025617	1.0772	0.00060732	1.5316	0.00086348	563.7947769790114	86.08	0.3886	86.105	85.869	86.258	0.025169					20	13	2	0	0	0	0.33099	1	21186	21186		19.257	2.3147	1	158610	+		23457	8697	15499	15653	31687	31687					0.0162323267722968
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(46)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;BAIAP2-TBCD|1|fusion	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.79443359375	2	587.794275	1173.574	-0.041417	-2.4344E-05	-0.22557	-0.00013259	-0.26698	-0.00015693	587.7941523225816	45.387	0.72374	45.387	45.151	45.874	0					46	24	3	0	0	0	0.038996	1	8910	8910		45.74	28.627	1	191340			23458	83	15500	15654	31688	31688		1			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(57)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;BAIAP2-TBCD|1|fusion	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7634887695312	2	587.794275	1173.574	-0.025219	-1.4824E-05	-0.24658	-0.00014494	-0.2718	-0.00015976	587.7939936799094	44.995	0.36878	44.995	44.808	45.177	0					34	13	3	0	0	0	0.070568	1	8782	8782		57.249	38.876	1	200360			23459	83	15500	15654	31689	31689		1			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(55)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;BAIAP2-TBCD|1|fusion	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.794677734375	2	587.794275	1173.574	0.33508	0.00019696	-0.16356	-9.6142E-05	0.17151	0.00010081	587.7942655318823	45.287	0.58097	45.375	45.148	45.729	0.08754					48	21	3	0	0	0	0.024248	1	8757	8757		55.235	34.781	1	162360			23460	83	15500	15654	31690	31690		1			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(42)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;BAIAP2-TBCD|1|fusion	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.3082275390625	2	587.794275	1173.574	0.7237	0.00042539	-0.57996	-0.0003409	0.14374	8.4487E-05	587.7937179991774	47.353	1.2214	47.436	46.937	48.158	0.083096					108	47	3	0	0	0	0.056368	1	9438	9438		41.956	22.699	1	213790			23461	83	15500	15654	31691	31691		1			-0.005847673228117856
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.3051147460938	2	549.305136	1096.59572	0.47376	0.00026024	-0.394	-0.00021643	0.079762	4.3814E-05	549.3049241708936	68.12	1.6736	68.12	67.285	68.958	0					113	63	2	0	0	0	0.0081278	3	15892	15839;15892;15959		72.968	48.947	1	129350			23462	4703	15501	15655	31692;31693;31694	31693					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3052978515625	2	549.305136	1096.59572	0.58604	0.00032191	-0.3085	-0.00016946	0.27753	0.00015245	549.304942454979	68.167	1.5579	68.231	67.318	68.876	0.063507					94	56	2	0	0	0	0.020768	2	15714	15714;15821		57.722	28.64	1	205570			23463	4703	15501	15655	31695;31696	31695					0.05128405488062526
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.77435302734375	2	502.810585	1003.60662	0.40983	0.00020607	0.27077	0.00013615	0.6806	0.00034221	502.8103918322212	57.465	0.46975	57.465	57.241	57.71	0					36	16	3	0	0	0	0.00054058	1	12577	12577		88.954	48.997	1	340200			23464	4948	15502	15656	31697	31697					0.10495807862389483
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.77447509765625	2	502.810585	1003.60662	0.36154	0.00018179	-0.034805	-1.75E-05	0.32674	0.00016429	502.81045885409094	57.358	0.45956	57.426	57.265	57.724	0.068371					39	17	3	0	0	0	0.0093433	1	12438	12438		81.89	49.585	1	230880			23465	4948	15502	15656	31698	31698					0.10495807862389483
VYLAFAVLF	9	Unmodified	_VYLAFAVLF_					0	0	0			REV__nc|ENSG00000141934|O43688-3|PLPP2	REV__nc|ENSG00000141934|O43688-3|PLPP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.1358032226562	2	521.802229	1041.5899	0.26129	0.00013634	-2.3769	-0.0012402	-2.1156	-0.0011039	521.8012711078834	62.075	0.31305	62.148	61.972	62.285	0.073421					25	11	3	0	0	0	0.20644	1	13828	13828		20.871	1.4322	1	200340	+		23466	9417	15503	15657	31699	31699					0.07077306976407272
VYLAKLGNFF	10	Unmodified	_VYLAKLGNFF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8092651367188	2	586.329142	1170.64373	0.50065	0.00029354	0.8482	0.00049732	1.3488	0.00079087	586.3294123903668	74.232	0.80511	74.232	73.829	74.635	0					71	29	4	0	0	0	0.031955	1	17703	17703		78.728	22.68	1	678160			23467	3024	15504	15658	31700	31700					0.06523479408133426
VYLAKLGNFF	10	Unmodified	_VYLAKLGNFF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.8093872070312	2	586.329142	1170.64373	0.79766	0.00046769	-0.021746	-1.275E-05	0.77591	0.00045494	586.3291409979821	74.16	0.657	74.209	73.962	74.619	0.048538					49	23	3	0	0	0	0.074057	1	17542	17542		69.105	50.959	1	544630			23468	3024	15504	15658	31701	31701					0.06523479408133426
VYLALLPPD	9	Unmodified	_VYLALLPPD_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF;ENSG00000159231|ENST00000290354|CBR3;ENSG00000159228|ENST00000290349|CBR1	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7894287109375	2	500.789318	999.564084	0.33755	0.00016904	-1.5958	-0.00079916	-1.2583	-0.00063012	500.78840150741286	85.941	0.63843	85.941	85.65	86.289	0					48	25	3	0	0	0	0.21398	2	21254	21254;21298		16.942	5.302	1	335760			23469	3721	15505	15659	31702;31703	31702					0.06428412734146605
VYLALLPPD	9	Unmodified	_VYLALLPPD_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF;ENSG00000159231|ENST00000290354|CBR3;ENSG00000159228|ENST00000290349|CBR1	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7889099121094	2	500.789318	999.564084	0.49199	0.00024638	-1.9372	-0.00097013	-1.4452	-0.00072374	500.7882351209414	85.864	0.6273	85.889	85.631	86.258	0.025169					44	22	3	0	0	0	0.21398	2	21093	21093;21142		16.942	5.302	1	396920			23470	3721	15505	15659	31704;31705	31704					0.06428412734146605
VYLATQGKVD	10	Unmodified	_VYLATQGKVD_					0	0	0			REV__ENSG00000065802|ENST00000264607|ASB1	REV__ENSG00000065802|ENST00000264607|ASB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2981567382812	2	547.298039	1092.58152	0.07126	3.9E-05	0.00097446	5.3332E-07	0.072234	3.9534E-05	547.2980136111821	22.783	0.29609	22.885	22.756	23.052	0.10178					43	27	2	0	0	0	0.46746	1	2125	2125		1.4819	0.68827	1	33332	+		23471	8103	15506	15660	31706	31706					0.0389370826915183
VYLDGIVRI	9	Unmodified	_VYLDGIVRI_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.3132934570312	2	524.313492	1046.61243	0.38275	0.00020068	-1.2592	-0.00066022	-0.87646	-0.00045954	524.3133553348856	68.352	0.59888	68.352	68.07	68.669	0					47	20	3	0	0	0	0.015341	2	15911	15911;15969		61.602	29.296	1	263060			23472	5203	15507	15661	31707;31708	31707					0.09098906374060789
VYLDGIVRI	9	Unmodified	_VYLDGIVRI_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.3135375976562	2	524.313492	1046.61243	0.32996	0.000173	-2.0197	-0.001059	-1.6897	-0.00088596	524.3132307341551	68.233	0.59113	68.297	68.103	68.694	0.063507					56	21	4	0	0	0	0.12752	1	15729	15729		39.95	23.801	1	404130			23473	5203	15507	15661	31709	31709					0.09098906374060789
VYLDHAGATLF	11	Unmodified	_VYLDHAGATLF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.8123779296875	2	603.811313	1205.60807	0.67559	0.00040793	0.11485	6.9345E-05	0.79044	0.00047728	603.8116389864447	63.177	0.68019	63.177	62.999	63.679	0					64	25	4	0	0	0	0.024091	1	14309	14309		63.961	44.599	1	627510			23474	828	15508	15662	31710	31710					0.013493971604702892
VYLDHAGATLF	11	Unmodified	_VYLDHAGATLF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.8120727539062	2	603.811313	1205.60807	0.6598	0.00039839	0.36836	0.00022242	1.0282	0.00062081	603.8116196814863	63.053	0.65863	63.126	62.906	63.565	0.072701					56	27	3	0	0	0	0.065679	1	14134	14134		53.833	36.72	1	518210			23475	828	15508	15662	31711	31711					0.013493971604702892
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENST00000462279.5_1_5:60188520-60189039:-|nuORF;ENSG00000130119|ENST00000360845|GNL3L	ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENST00000462279.5_1_5:60188520-60189039:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2738037109375	2	583.850242	1165.68593	0.65483	0.00038232	-0.016778	-9.7958E-06	0.63805	0.00037253	583.850042846239	63.33	0.56412	63.33	63.169	63.733	0					43	19	3	0	0	0	0.1231	1	14354	14354		41.956	21.502	1	459480			23476	2450	15509	15663	31712	31712					0.1097145481651296
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENST00000462279.5_1_5:60188520-60189039:-|nuORF;ENSG00000130119|ENST00000360845|GNL3L	ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENST00000462279.5_1_5:60188520-60189039:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.850341796875	2	583.850242	1165.68593	0.71238	0.00041592	-0.24461	-0.00014282	0.46776	0.0002731	583.8500070145584	63.177	0.5772	63.249	63.099	63.676	0.072701					50	23	3	0	0	0	0.037699	1	14189	14189		46.022	26.765	1	598910			23477	2450	15509	15663	31713	31713					0.1097145481651296
VYLDKHIDM	9	Unmodified	_VYLDKHIDM_					0	0	0			REV__ENST00000437653.1_1_3:175695464-175695797:-|nuORF	REV__ENST00000437653.1_1_3:175695464-175695797:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7745361328125	2	567.286617	1132.55868	0.12915	7.3264E-05	-1.2783	-0.00072518	-1.1492	-0.00065191	567.2856601290293	59.491	0.45052	59.491	59.249	59.7	0					28	17	2	0	0	0	0.24791	1	13179	13179		10.074	0	1	239420	+		23478	11872	15510	15664	31714	31714					-0.002296341199780727
VYLDVIDKWG	10	Unmodified	_VYLDVIDKWG_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.7340087890625	2	604.321514	1206.62847	0.58532	0.00035372	2.6914	0.0016265	3.2768	0.0019802	604.3231659801436	83.898	0.55095	83.92	83.641	84.192	0.021751					28	19	2	0	0	0	0.31829	1	20541	20541		1.8442	0.19162	1	93577			23479	4243	15511	15665	31715	31715					0.03342567820277509
VYLDVIDKWG	10	Unmodified	_VYLDVIDKWG_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	604.321514	1206.62847	0.84266	0.00050924	2.3484	0.0014192	3.191	0.0019284	604.3225432648045	83.797	0.36464	83.797	83.686	84.051	0	-0.061338	-0.0001891	NaN	1.8442	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66604			23480	4243	15511	15665							0.03342567820277509
VYLEAQNKL	9	Unmodified	_VYLEAQNKL_					0	0	0			REV__nc|ENSG00000170558|P19022-2|CDH2	REV__nc|ENSG00000170558|P19022-2|CDH2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.784423828125	2	539.300581	1076.58661	0.35047	0.00018901	-1.5144	-0.00081673	-1.164	-0.00062772	539.300168672575	59.539	0.26786	59.612	59.427	59.695	0.072338					10	9	2	0	0	0	0.2491	1	13084	13084		8.5933	2.2392	1	73851	+		23481	12842	15512	15666	31716	31716					0.05138012131760661
VYLEENILI	9	Unmodified	_VYLEENILI_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7823486328125	2	553.310615	1104.60668	0.93088	0.00051506	-0.83255	-0.00046066	0.098324	5.4404E-05	553.310145296417	81.42	0.39684	81.42	81.265	81.662	0					24	13	2	0	0	0	0.2094	1	19916	19916		22.736	0	1	164260			23482	3521	15513	15667	31717	31717					0.05855763071735964
VYLEENILI	9	Unmodified	_VYLEENILI_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7820434570312	2	553.310615	1104.60668	0.68541	0.00037924	-0.55887	-0.00030923	0.12654	7.0014E-05	553.3101927246371	81.417	0.5144	81.439	81.162	81.676	0.021866					30	17	2	0	0	0	0.24635	1	19742	19742		10.824	0	1	152930			23483	3521	15513	15667	31718	31718					0.05855763071735964
VYLEKFMTF	9	Unmodified	_VYLEKFMTF_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7786865234375	2	589.301736	1176.58892	0.14419	8.497E-05	3.8098	0.0022451	3.954	0.0023301	589.3039703257243	73.104	0.75533	73.104	72.528	73.284	0					53	26	3	0	0	0	0.24929	1	17280	17280		9.3831	1.473	1	151850			23484	1283	15514	15668	31719	31719					0.007687245452189018
VYLEPMEIA	9	Unmodified	_VYLEPMEIA_					0	0	0		nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7849731445312	2	532.770268	1063.52598	0.3125	0.00016649	0.20746	0.00011053	0.51997	0.00027702	533.2719082775507	91.176	0.5554	91.212	90.909	91.464	0.035446					26	19	2	0	0	0	0.2446	1	22663	22663		11.64	0	1	105620			23485	7583	15515	15669	31720	31720					-0.003238412428117954
VYLFLHRH	8	Unmodified	_VYLFLHRH_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|46|1|anti-sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|35|2|anti-sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|71|3|anti-sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|45|1|anti-sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|72|3|anti-sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|48|1|anti-sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|73|3|anti-sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|56|1|anti-sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|50|1|anti-sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|49|1|anti-sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|62|2|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|48|1|anti-sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|66|3|anti-sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|40|1|anti-sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|74|3|anti-sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|53|2|anti-sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|50|1|anti-sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|48|1|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.8070678710938	2	542.806168	1083.59778	0.53335	0.00028951	0.47436	0.00025748	1.0077	0.00054699	542.8062628453414	99.048	0.5242	99.048	98.909	99.433	0					63	36	2	0	0	0	0.45077	1	25319	25319		19.439	4.8573	1	151950			23486	13413	15516	15670	31721	31721					0.05932879016563675
VYLFLHRH	8	Unmodified	_VYLFLHRH_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|46|1|anti-sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|35|2|anti-sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|71|3|anti-sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|45|1|anti-sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|72|3|anti-sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|48|1|anti-sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|73|3|anti-sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|56|1|anti-sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|50|1|anti-sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|49|1|anti-sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|62|2|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|48|1|anti-sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|66|3|anti-sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|40|1|anti-sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|74|3|anti-sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|53|2|anti-sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|50|1|anti-sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|48|1|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.8062133789062	2	542.806168	1083.59778	0.60064	0.00032603	0.32371	0.00017571	0.92435	0.00050174	542.8062079042156	98.921	0.88829	98.963	98.68	99.569	0.041931					69	58	2	0	0	0	0.45077	1	25103	25103		19.439	19.439	1	239160			23487	13413	15516	15670	31722	31722					0.05932879016563675
VYLGSWIEGF	10	Unmodified	_VYLGSWIEGF_					0	0	0		nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7	nc|ENSG00000083223|Q5VYS8-3|TUT7	nc|ENSG00000083223|Q5VYS8-3|TUT7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.7595825195312	2	585.795132	1169.57571	0.81599	0.000478	0.43088	0.00025241	1.2469	0.00073041	586.2964488228689	93.117	0.31261	93.117	92.928	93.241	0					19	11	2	0	0	0	0.22254	1	23455	23455		47.749	20.12	1	133080			23488	929	15517	15671	31723	31723					-0.00229390242543559
VYLGSWIEGF	10	Unmodified	_VYLGSWIEGF_					0	0	0		nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7	nc|ENSG00000083223|Q5VYS8-3|TUT7	nc|ENSG00000083223|Q5VYS8-3|TUT7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.760009765625	2	585.795132	1169.57571	0.90314	0.00052905	-1.1205	-0.00065637	-0.21735	-0.00012732	585.794810608293	93.077	0.30568	93.114	92.949	93.255	0.037369					23	13	2	0	0	0	0.26611	1	23276	23276		34.402	17.289	1	72334			23489	929	15517	15671	31724	31724					-0.00229390242543559
VYLGTAAPTYF	11	Unmodified	_VYLGTAAPTYF_					0	0	0			REV__nc|ENSG00000197822|Q16625-2|OCLN	REV__nc|ENSG00000197822|Q16625-2|OCLN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8082885742188	2	601.808239	1201.60193	0.49047	0.00029517	0.36935	0.00022228	0.85982	0.00051745	601.807955648784	75.817	1.7447	75.861	75.085	76.83	0.044037					130	83	2	0	0	0	0.16189	1	18188	18188		36.127	14.59	1	2895000	+		23490	10873	15518	15672	31725	31725					0.009188789289282795
VYLHDFQRF	9	Unmodified	_VYLHDFQRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant;ENST00000569929.5_1_16:81888133-81917132:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.8768615722656	3	408.876857	1223.60874	0.38723	0.00015833	-0.58994	-0.00024121	-0.20271	-8.2884E-05	408.8766613395211	49.243	0.56249	49.243	49.116	49.679	0					31	19	3	0	0	0	0.26684	1	10098	10098		10.8	5.0161	1	103930			23491	5330	15519	15673	31726	31726					0.005882366001742412
VYLHDFQRF	9	Unmodified	_VYLHDFQRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant;ENST00000569929.5_1_16:81888133-81917132:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	408.876857	1223.60874	-0.075078	-3.0698E-05	-0.56844	-0.00023242	-0.64352	-0.00026312	408.8768301924804	49.186	0.40809	49.263	49.076	49.484	0.076607	0.010052	1.8653E-05	NaN	10.8	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80278			23492	5330	15519	15673							0.005882366001742412
VYLHRRNV	8	Unmodified	_VYLHRRNV_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.80859375	2	528.8067	1055.59885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.92	1	104.92	104.42	105.42	0								0	0	0	0.38822	1	27010	27010		5.7604	0.52976	1				23493	74	15520	15674	31727	31727					0.0732709338544737
VYLITIIAL	9	Unmodified	_VYLITIIAL_					0	0	0		ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.81341552734375	2	509.830986	1017.64742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.61	1	101.61	101.11	102.11	0								0	0	0	0.25692	1	26034	26034		7.9102	0	1				23494	5119	15521	15675	31728	31728					0.13930149181976503
VYLKYLASF	9	Unmodified	_VYLKYLASF_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;nc|ENSG00000197816|Q9P1Z9|CCDC180;nc|ENSG00000197816|Q9P1Z9-3|CCDC180;ENST00000487976.2_1_9:100136781-100139173:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3001708984375	2	552.310418	1102.60628	0.79899	0.00044129	-0.82635	-0.0004564	-0.027361	-1.5112E-05	552.3096195623637	66.888	0.52466	66.888	66.688	67.213	0					43	18	3	0	0	0	0.29105	1	15506	15506		7.9102	2.6795	1	289570			23495	5322	15522	15676	31729	31729					0.059083881425067375
VYLLEVYRL	9	Unmodified	_VYLLEVYRL_					0	0	0		RLF-SMAP2|1|fusion;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8233642578125	2	584.342249	1166.66995	0.55388	0.00032365	-0.34938	-0.00020416	0.20449	0.00011949	584.8439637991406	74.434	0.64723	74.434	74.287	74.935	0					43	23	3	0	0	0	0.046885	1	17750	17750		63.961	31.655	1	324500			23496	1984	15523	15677	31730	31730					0.09327748579607942
VYLLEVYRL	9	Unmodified	_VYLLEVYRL_					0	0	0		RLF-SMAP2|1|fusion;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.8233032226562	2	584.342249	1166.66995	0.73822	0.00043137	-0.59337	-0.00034673	0.14485	8.4644E-05	584.3417145955494	74.411	0.4447	74.46	74.257	74.701	0.048546					31	15	3	0	0	0	0.12752	1	17625	17625		39.95	18.413	1	318900			23497	1984	15523	15677	31731	31731					0.09327748579607942
VYLLFHEEI	9	Unmodified	_VYLLFHEEI_					0	0	0		tr|U7SMV6|U7SMV6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01844PE=4SV=1	tr|U7SMV6|U7SMV6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01844PE=4SV=1	tr|U7SMV6|U7SMV6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01844PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.81103515625	2	581.810782	1161.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.3	1	104.33	103.83	104.83	0.03791								0	0	0	0.18435	1	26661	26661		20.454	1.0917	1				23498	13504	15524	15678	31732	31732					0.03267182791569212
VYLLIDAVI	9	Unmodified	_VYLLIDAVI_					0	0	0			REV__ENST00000569969.5_2_16:28993554-28995617:+|nuORF	REV__ENST00000569969.5_2_16:28993554-28995617:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.81304931640625	2	509.812793	1017.61103	0.43584	0.0002222	0.18187	9.2719E-05	0.61771	0.00031492	509.8126685418178	101.33	0.4698	101.38	101.07	101.54	0.042656					32	27	2	0	0	0	0.31496	1	25777	25777		4.756	0.42677	1	254130	+		23499	10182	15525	15679	31733	31733					0.10293272285287003
VYLLSSALI	9	Unmodified	_VYLLSSALI_					0	0	0			REV__ENSG00000095539|ENST00000210633|SEMA4G	REV__ENSG00000095539|ENST00000210633|SEMA4G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7972412109375	2	489.797143	977.579734	0.26452	0.00012956	0.19077	9.3441E-05	0.4553	0.000223	489.7971397462737	85.923	0.78065	85.923	85.686	86.467	0					81	30	4	0	0	0	0.16036	1	21400	21400		23.148	0	1	1975800	+		23500	8343	15526	15680	31734	31734					0.09004699251181592
VYLLSSALI	9	Unmodified	_VYLLSSALI_					0	0	0			REV__ENSG00000095539|ENST00000210633|SEMA4G	REV__ENSG00000095539|ENST00000210633|SEMA4G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.797119140625	2	489.797143	977.579734	0.39872	0.00019529	-0.023483	-1.1502E-05	0.37523	0.00018379	489.7970447728411	85.865	0.84216	85.89	85.695	86.537	0.025169					82	31	4	0	0	0	0.083504	1	21192	21192		36.044	0	1	2043200	+		23501	8343	15526	15680	31735	31735					0.09004699251181592
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8154296875	2	531.815336	1061.61612	0.5424	0.00028846	-0.020757	-1.1039E-05	0.52164	0.00027742	531.8152406669741	99.007	1.0707	99.007	98.533	99.604	0					224	67	4	0	0	0	0.0030029	8	25176	25136;25176;25213;25250;25289;25331;25344;25372		109.63	71.478	1	1008000			23502	13405;13411;13419;13420	15527	15681	31736;31737;31738;31739;31740;31741;31742;31743	31737					0.08777576147872423
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3349609375	2	531.815336	1061.61612	0.49477	0.00026313	3.569	0.001898	4.0638	0.0021612	531.8179565388833	99.713	0.054581	99.713	99.688	99.743	0					4	2	2	0	0	0	0.2298	1	25464	25464		16.942	3.4344	1	48838			23503	13405;13411;13419;13420	15527	15681	31744	31744					0.08777576147872423
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8154296875	2	531.815336	1061.61612	0.64871	0.00034499	-0.14102	-7.4996E-05	0.50769	0.00027	531.8151979827312	98.824	0.47675	98.866	98.52	98.997	0.041931					53	26	3	0	0	0	0.0030029	2	25004	25004;25053		109.63	71.478	1	1505700			23504	13405;13411;13419;13420	15527	15681	31745;31746	31745					0.08777576147872423
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8155517578125	2	531.815336	1061.61612	0.64028	0.00034051	-0.14858	-7.9016E-05	0.4917	0.0002615	531.815237393926	98.988	0.65556	99.03	98.997	99.653	0.041931					68	45	3	0	0	0	0.0030029	4	25092	25092;25128;25172;25214		109.63	71.478	1	1947400			23505	13405;13411;13419;13420	15527	15681	31747;31748;31749;31750	31747					0.08777576147872423
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8153686523438	2	531.815336	1061.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.604	1	98.646	98.146	99.146	0.041931								0	0	0	0.0036488	1	24968	24968		77.984	47.76	1				23506	13405;13411;13419;13420	15527	15681	31751	31751					0.08777576147872423
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3343505859375	2	531.815336	1061.61612	0.60898	0.00032386	0.15212	8.0902E-05	0.7611	0.00040477	531.8154015807199	99.975	0.15678	100.02	99.924	100.08	0.042839					12	7	2	0	0	0	0.164	1	25370	25370		30.225	7.4885	1	52508			23507	13405;13411;13419;13420	15527	15681	31752	31752					0.08777576147872423
VYLPDVWTI	9	Unmodified	_VYLPDVWTI_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3004150390625	2	553.30005	1104.58555	0.72974	0.00040377	0.5218	0.00028871	1.2515	0.00069248	553.3000682034703	92.819	0.57016	92.819	92.531	93.101	0					49	21	3	0	0	0	0.0043613	2	23346	23346;23392		96.285	62.182	1	369930			23508	3708	15528	15682	31753;31754	31753					0.037437977628542285
VYLPDVWTI	9	Unmodified	_VYLPDVWTI_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.301025390625	2	553.30005	1104.58555	0.77073	0.00042644	-0.48351	-0.00026753	0.28721	0.00015892	553.3001215165623	92.77	0.61505	92.807	92.525	93.14	0.037369					58	22	4	0	0	0	0.011655	2	23169	23169;23220		64.236	35.749	1	519770			23509	3708	15528	15682	31755;31756	31755					0.037437977628542285
VYLPGHFFHL	10	Unmodified	_VYLPGHFFHL_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;ENSG00000186088|ENST00000257626|GSAP	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.5537414550781	3	410.553715	1228.63931	0.78502	0.00032229	-0.89288	-0.00036657	-0.10786	-4.4281E-05	410.5532529983954	64.977	0.52217	64.977	64.796	65.318	0					37	18	3	0	0	0	0.36848	2	14878	14878;14956		15.248	8.1468	1	134950			23510	5066	15529	15683	31757;31758	31757					0.034140149852191826
VYLPGHFFHL	10	Unmodified	_VYLPGHFFHL_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;ENSG00000186088|ENST00000257626|GSAP	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.55352783203125	3	410.553715	1228.63931	0.2601	0.00010679	-0.26198	-0.00010756	-0.0018771	-7.7066E-07	410.55347882968	64.891	0.46289	64.96	64.771	65.234	0.068909					31	17	3	0	0	0	0.43771	1	14717	14717		7.1017	2.9122	1	150400			23511	5066	15529	15683	31759	31759					0.034140149852191826
VYLPGSRQTL	10	Unmodified	_VYLPGSRQTL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3193359375	2	567.319306	1132.62406	0.36644	0.00020789	-0.46259	-0.00026244	-0.096154	-5.455E-05	567.3193010052119	47.502	0.50138	47.502	47.17	47.672	0					40	16	3	0	0	0	0.3016	1	9548	9548		21.537	2.28	1	138490			23512	4738	15530	15684	31760	31760					0.06305103397380662
VYLPGSRQTL	10	Unmodified	_VYLPGSRQTL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3193969726562	2	567.319306	1132.62406	0.40012	0.00022699	-0.20467	-0.00011612	0.19544	0.00011088	567.3193806193763	47.36	0.346	47.443	47.269	47.615	0.083096					32	13	3	0	0	0	0.30896	1	9398	9398		18.146	2.2992	1	107260			23513	4738	15530	15684	31761	31761					0.06305103397380662
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.3214721679688	2	537.321317	1072.62808	0.31792	0.00017082	-0.053564	-2.8781E-05	0.26435	0.00014204	537.321204342413	59.576	0.78281	59.576	59.336	60.119	0					86	30	4	0	0	0	0.00014866	1	13207	13207		115.69	79.565	1	1171800			23514	786	15531	15685	31762	31762					0.09467192891088416
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.3213500976562	2	537.321317	1072.62808	0.39693	0.00021328	-0.014274	-7.6699E-06	0.38265	0.00020561	537.3211670615913	59.481	1.1255	59.553	59.301	60.426	0.072338					84	42	4	0	0	0	0.0025191	1	13053	13053		112.59	72.636	1	991270			23515	786	15531	15685	31763	31763					0.09467192891088416
VYLPPEAFTF	10	Unmodified	_VYLPPEAFTF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3056030273438	2	592.305332	1182.59611	0.46233	0.00027384	0.27897	0.00016524	0.7413	0.00043907	592.3055310839368	87.623	1.0218	87.623	87.237	88.259	0					94	37	3	0	0	0	4.9593E-05	3	21812	21812;21870;21963		111.29	84.403	1	400130			23516	2499	15532	15686	31764;31765;31766	31764					0.012117804172703472
VYLPPEAFTF	10	Unmodified	_VYLPPEAFTF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3053588867188	2	592.305332	1182.59611	0.29771	0.00017634	0.062885	3.7247E-05	0.3606	0.00021358	592.3052203977081	87.647	0.91778	87.677	87.333	88.251	0.030037					83	33	3	0	0	0	0.032065	2	21734	21734;21794		62.573	51.749	1	401020			23517	2499	15532	15686	31767;31768	31767					0.012117804172703472
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.78173828125	2	515.782025	1029.5495	0.25235	0.00013016	-0.45988	-0.0002372	-0.20752	-0.00010704	515.7817264897039	50.228	0.71209	50.228	49.968	50.68	0					64	25	4	0	0	0	0.083504	2	10365	10365;10420		36.044	5.8194	1	407860			23518	389	15533	15687	31769;31770	31769					0.035903405860153725
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.781982421875	2	515.782025	1029.5495	0.31391	0.00016191	-0.49375	-0.00025467	-0.17984	-9.2758E-05	515.7817842664813	50.175	0.51939	50.248	50.007	50.526	0.07312					50	17	4	0	0	0	0.083504	1	10231	10231		36.044	5.8194	1	380850			23519	389	15533	15687	31771	31771					0.035903405860153725
VYLQDIHCVGS	11	Unmodified	_VYLQDIHCVGS_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.2794189453125	2	617.300255	1232.58596	-0.22278	-0.00013752	-1.7106	-0.0010559	-1.9334	-0.0011935	617.2994386529598	86.068	0.41325	86.068	85.849	86.263	0					24	15	2	0	0	0	0.39744	1	21281	21281		4.897	0.95262	1	190920			23520	503	15534	15688	31772	31772					-0.02103150579614521
VYLQEFELL	9	Unmodified	_VYLQEFELL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3104858398438	2	577.310615	1152.60668	0.25022	0.00014446	0.20052	0.00011576	0.45074	0.00026022	577.3105344014642	90.119	0.40062	90.119	89.984	90.384	0					34	16	3	0	0	0	0.034936	1	22539	22539		47.594	9.4188	1	358300			23521	2764	15535	15689	31773	31773					0.036477630716944986
VYLQEFELL	9	Unmodified	_VYLQEFELL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.8124389648438	2	577.310615	1152.60668	0.12184	7.0342E-05	0.23093	0.00013332	0.35277	0.00020366	577.8122810652609	90.105	0.38698	90.139	90.035	90.422	0.034065					25	16	2	0	0	0	0.012041	1	22374	22374		63.961	10.128	1	439790			23522	2764	15535	15689	31774	31774					0.036477630716944986
VYLQNWSHVL	10	Unmodified	_VYLQNWSHVL_					0	0	0		ENST00000392357.1_1_17:80012338-80013241:+|nuORF;ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8344116210938	2	629.83258	1257.65061	0.63083	0.00039732	1.943	0.0012238	2.5738	0.0016211	629.8335567074657	66.522	0.38622	66.522	66.302	66.688	0					35	15	3	0	0	0	0.021674	3	15345	15317;15345;15377		84.522	59.531	1	277040			23523	4352	15536	15690	31775;31776;31777	31776					0.03208792288683071
VYLQNWSHVL	10	Unmodified	_VYLQNWSHVL_					0	0	0		ENST00000392357.1_1_17:80012338-80013241:+|nuORF;ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3363037109375	2	629.83258	1257.65061	0.64123	0.00040387	1.0527	0.00066301	1.6939	0.0010669	629.8331121482935	66.432	0.41418	66.499	66.427	66.841	0.066872					26	16	3	0	0	0	0.045012	1	15208	15208		76.825	46.188	1	237870			23524	4352	15536	15690	31778	31778					0.03208792288683071
VYLQPHGPLLV	11	Unmodified	_VYLQPHGPLLV_					0	0	0		nc|ENSG00000108846|O15438-3|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3624877929688	2	618.360973	1234.70739	-0.079971	-4.9451E-05	0.54427	0.00033655	0.4643	0.0002871	618.8626709454004	57.757	0.27343	57.825	57.697	57.97	0.068371					14	10	2	0	0	0	0.39824	1	12563	12563		5.7319	1.4026	1	115020			23525	7481	15537	15691	31779	31779					0.09942839845211893
VYLRRELI	8	Unmodified	_VYLRRELI_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.324462890625	2	531.326934	1060.63931	0.13532	7.1897E-05	-3.7155	-0.0019741	-3.5802	-0.0019022	531.3247665546154	90.747	0.30901	90.782	90.657	90.966	0.035446					19	12	2	0	0	0	0.53817	1	22589	22589		2.5775	0.73324	1	207330			23526	3848	15538	15692	31780	31780					0.1114201498521652
VYLRRELI	8	Unmodified	_VYLRRELI_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	531.326934	1060.63931	0.34577	0.00018372	-3.4884	-0.0018535	-3.1426	-0.0016698	531.3251354210271	90.777	0.26532	90.777	90.708	90.973	0	-0.0029064	5.3499E-05	NaN	2.5775	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106140			23527	3848	15538	15692							0.1114201498521652
VYLSLIPII	9	Unmodified	_VYLSLIPII_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1;nc|ENSG00000127526|Q96K37-3|SLC35E1;ENST00000488894.1_1_19:16677303-16683001:-|nuORF	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8304443359375	2	515.830986	1029.64742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.3	1	103.3	102.8	103.8	0								0	0	0	0.21527	1	26548	26548		15.847	4.2069	1				23528	2367	15539	15693	31781	31781					0.13378149181994559
VYLSMSYYF	9	Oxidation (M)	_VYLSM(Oxidation (M))SYYF_		VYLSM(1)SYYF		VYLSM(64)SYYF	0	0	1		ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF;ENSG00000167996|ENST00000273550|FTH1	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.7670288085938	2	594.767726	1187.5209	0.19261	0.00011456	0.59418	0.0003534	0.78679	0.00046796	594.7676862933889	74.057	0.86275	74.057	73.716	74.579	0					59	31	3	0	0	0	0.011655	1	17671	17671		64.236	42.49	1	462540			23529	4249	15540	15694	31782	31782		257			-0.06536145105474134
VYLSMSYYF	9	Oxidation (M)	_VYLSM(Oxidation (M))SYYF_		VYLSM(1)SYYF		VYLSM(51)SYYF	0	0	1		ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF;ENSG00000167996|ENST00000273550|FTH1	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.8004150390625	2	594.767726	1187.5209	0.32064	0.0001907	0.58692	0.00034908	0.90756	0.00053979	594.7673867716876	74.037	0.74043	74.086	73.827	74.567	0.048546					52	26	3	0	0	0	0.073221	1	17454	17454		50.855	22.368	1	284660			23530	4249	15540	15694	31783	31783		257			-0.06536145105474134
VYLSNVVLF	9	Unmodified	_VYLSNVVLF_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.3026123046875	2	527.302593	1052.59063	0.30011	0.00015825	0.055352	2.9187E-05	0.35546	0.00018744	527.3024992008784	87.359	0.78484	87.359	87.163	87.948	0					76	28	4	0	0	0	0.0010022	2	21684	21684;21734		123.45	53.292	1	1067500			23531	3000	15541	15695	31784;31785	31784					0.06644101625443
VYLSNVVLF	9	Unmodified	_VYLSNVVLF_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.3025512695312	2	527.302593	1052.59063	0.15213	8.0221E-05	0.25084	0.00013227	0.40298	0.00021249	527.3026101976828	87.356	0.69743	87.384	87.151	87.849	0.02758					79	27	4	0	0	0	0.0027323	2	21546	21498;21546		111.29	40.153	1	1192400			23532	3000	15541	15695	31786;31787	31787					0.06644101625443
VYLSRRPSR	9	Unmodified	_VYLSRRPSR_					0	0	0		ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.330078125	2	567.330539	1132.64652	0.2232	0.00012663	-0.32185	-0.0001826	-0.098654	-5.5969E-05	567.330282121425	86.461	2.8884	86.489	85.666	88.554	0.027367					440	114	5	0	0	0	0.24767	1	21766	21766		13.042	2.2185	1	7811600			23533	6743	15542	15696	31788	31788					0.08550747585650242
VYLTGYNFTL	10	Unmodified	_VYLTGYNFTL_					0	0	0		nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2010498046875	2	595.808239	1189.60193	0.45565	0.00027148	0.024742	1.4741E-05	0.4804	0.00028622	595.8078521413536	83.565	0.43831	83.565	83.279	83.717	0					17	14	2	0	0	0	0.31689	1	20585	20585		8.1555	1.9497	1	77760			23534	2276	15543	15697	31789	31789					0.014708789289670676
VYLTHLDYV	9	Unmodified	_VYLTHLDYV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7952270507812	2	561.795132	1121.57571	0.13658	7.6728E-05	1.567	0.00088032	1.7036	0.00095705	561.7967759316368	59.206	0.78526	59.206	58.955	59.74	0					44	30	3	0	0	0	0.12809	1	13096	13096		26.884	9.9414	1	199890			23535	925	15544	15698	31790	31790					0.01978609757452432
VYLTHLDYV	9	Unmodified	_VYLTHLDYV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7946166992188	2	561.795132	1121.57571	0.27386	0.00015385	-0.62382	-0.00035046	-0.34996	-0.00019661	561.7945706308656	59.082	0.27945	59.152	59.02	59.299	0.070477					20	11	3	0	0	0	0.17247	1	12945	12945		21.747	4.8044	1	138760			23536	925	15544	15698	31791	31791					0.01978609757452432
VYLVDQFAKI	10	Unmodified	_VYLVDQFAKI_					0	0	0			REV__nc|ENSG00000183878|O14607-5|UTY	REV__nc|ENSG00000183878|O14607-5|UTY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.33984375	2	598.339707	1194.66486	0.11678	6.9875E-05	0.78411	0.00046916	0.90089	0.00053904	598.3402133003971	58.493	0.5789	58.564	58.366	58.945	0.070477					49	19	4	0	0	0	0.37637	1	12744	12744		14.405	0	1	536330	+		23537	10617	15545	15699	31792	31792					0.0753144471698306
VYLYKNTLCP	10	Unmodified	_VYLYKNTLCP_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5364990234375	3	405.21437	1212.62128	-0.27225	-0.00011032	3.1709	0.0012849	2.8986	0.0011746	405.2157872747416	43.146	0.38712	43.236	43.039	43.426	0.089764					17	13	2	0	0	0	0.31712	1	8131	8131		3.5871	0	1	38363			23538	3967	15546	15700	31793	31793					0.023475119482100126
VYLYYELT	8	Unmodified	_VYLYYELT_					0	0	0		ENST00000557163.1_1_14:61746812-61748042:-|nuORF;ENSG00000182107|ENST00000555868|TMEM30B	ENST00000557163.1_1_14:61746812-61748042:-|nuORF	ENST00000557163.1_1_14:61746812-61748042:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.2821044921875	2	532.270958	1062.52736	0.33482	0.00017821	-1.3595	-0.00072362	-1.0247	-0.0005454	532.2694394138678	60.152	0.42688	60.225	60.065	60.492	0.072411					26	14	3	0	0	0	0.52502	1	13336	13336		9.3474	2.0582	1	69269			23539	4860	15547	15701	31794	31794					-0.0013988388243433292
VYLYYELT	8	Unmodified	_VYLYYELT_					0	0	0		ENST00000557163.1_1_14:61746812-61748042:-|nuORF;ENSG00000182107|ENST00000555868|TMEM30B	ENST00000557163.1_1_14:61746812-61748042:-|nuORF	ENST00000557163.1_1_14:61746812-61748042:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.270958	1062.52736	0.53423	0.00028435	-3.4188	-0.0018197	-2.8846	-0.0015354	532.2692760800854	60.215	0.36561	60.215	60.091	60.456	0	-0.0047227	-0.00031998	NaN	9.3474	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77557			23540	4860	15547	15701							-0.0013988388243433292
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(87)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.78369140625	2	648.783907	1295.55326	0.31247	0.00020272	-0.11327	-7.349E-05	0.19919	0.00012923	648.7838050387112	61.984	0.8382	61.984	61.737	62.575	0					60	32	2	0	0	0	0.0045978	1	14135	14135		87.258	63.238	1	3006100			23541	3192	15548	15702	31795	31795		208			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(87)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.7841186523438	2	648.783907	1295.55326	0.48096	0.00031204	-0.17157	-0.00011131	0.30939	0.00020072	648.7837685808531	63.406	3.3889	63.406	62.547	65.936	0					232	123	2	0	0	0	0.0045978	6	14769	14769;14822;14977;15110;15119;15155		87.258	59.914	1	3840100			23542	3192	15548	15702	31796;31797;31798;31799;31800;31801	31796		208			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(57)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.7842407226562	2	648.783907	1295.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.253	1	66.253	65.753	66.753	0								0	0	0	0.030558	1	15267	15267		57.249	44.207	1				23543	3192	15548	15702	31802	31802		208			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(53)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.7839965820312	2	648.783907	1295.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.462	1	66.462	65.962	66.962	0								0	0	0	0.037949	1	15331	15331		53.317	40.274	1				23544	3192	15548	15702	31803	31803		208			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(50)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.7838745117188	2	648.783907	1295.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.13	1	67.13	66.63	67.63	0								0	0	0	0.047721	1	15536	15536		49.527	40.144	1				23545	3192	15548	15702	31804	31804		208			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(69)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.7843627929688	2	648.783907	1295.55326	0.18837	0.00012221	-0.0065285	-4.2356E-06	0.18184	0.00011798	648.7838892316846	61.906	1.1056	61.98	61.752	62.858	0.073418					80	44	2	0	0	0	0.0093024	1	13978	13978		69.338	51.192	1	2886000			23546	3192	15548	15702	31805	31805		208			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(130)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.7839965820312	2	648.783907	1295.55326	0.29611	0.00019211	-0.10758	-6.9795E-05	0.18853	0.00012231	648.7838215962415	63.374	3.688	63.446	62.715	66.403	0.071014					211	140	2	0	0	0	0.00066972	6	14394	14394;14755;14833;14881;15033;15139		128.93	98.296	1	3387200			23547	3192	15548	15702	31806;31807;31808;31809;31810;31811	31806		208			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(53)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.7845458984375	2	648.783907	1295.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.575	1	66.64	66.14	67.14	0.065071								0	0	0	0.037949	1	15218	15218		53.317	40.274	1				23548	3192	15548	15702	31812	31812		208			-0.08269357702488378
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.7865600585938	2	640.78645	1279.55835	0.44352	0.0002842	-0.34926	-0.0002238	0.094252	6.0395E-05	640.7862413215561	69.813	1.9856	69.813	69.545	71.53	0					180	70	5	0	0	0	0.00066972	6	16356	16308;16356;16400;16448;16603;16656		128.93	98.296	1	2234800			23549	3192	15548	15703	31813;31814;31815;31816;31817;31818	31814					-0.0702505383985681
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.7865600585938	2	640.78645	1279.55835	0.30023	0.00019238	-0.13284	-8.5124E-05	0.16739	0.00010726	640.7863302039111	69.655	1.5594	69.715	69.526	71.086	0.060555					146	61	4	0	0	0	0.0043442	6	16183	16135;16183;16231;16378;16415;16459		96.936	66.299	1	2167500			23550	3192	15548	15703	31819;31820;31821;31822;31823;31824	31820					-0.0702505383985681
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(130)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7940063476562	2	563.794275	1125.574	-0.14214	-8.0136E-05	-0.28093	-0.00015839	-0.42307	-0.00023852	563.7939798648733	43.856	0.77988	43.856	43.638	44.418	0					70	26	4	0	0	0	0.00066972	2	8472	8427;8472		128.93	78.999	1	414110			23551	2992	15549	15704	31825;31826	31826		194			0.016232326772069428
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(110)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7940673828125	2	563.794275	1125.574	-0.1193	-6.726E-05	0.45633	0.00025727	0.33703	0.00019001	563.7945351098635	45.764	1.3973	45.764	45.052	46.449	0					124	48	4	0	0	0	0.0034159	2	9020	8974;9020		107.1	57.167	1	344900			23552	2992	15549	15704	31827;31828	31828		194			0.016232326772069428
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(130)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7940673828125	2	563.794275	1125.574	0.011433	6.446E-06	-0.13073	-7.3706E-05	-0.1193	-6.726E-05	563.7939338067943	43.793	0.99595	43.882	43.632	44.628	0.088924					71	34	4	0	0	0	0.00066972	1	8306	8306		128.93	57.01	1	395870			23553	2992	15549	15704	31829	31829		194			0.016232326772069428
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(97)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7941284179688	2	563.794275	1125.574	0.080285	4.5264E-05	0.54465	0.00030707	0.62493	0.00035233	563.7945927916645	45.622	1.1073	45.707	45.319	46.426	0.085617					104	41	3	0	0	0	0.0043442	1	8859	8859		96.936	55.096	1	281140			23554	2992	15549	15704	31830	31830		194			0.016232326772069428
VYMGLLAVF	9	Oxidation (M)	_VYM(Oxidation (M))GLLAVF_		VYM(1)GLLAVF		VYM(80)GLLAVF	0	0	1		ENST00000533687.1_1_11:118969111-118971155:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7760620117188	2	514.777896	1027.54124	0.34252	0.00017632	-0.28703	-0.00014776	0.055482	2.8561E-05	514.7775744252375	89.079	0.72672	89.079	88.663	89.39	0					68	29	3	0	0	0	0.0058736	4	22130	22130;22152;22202;22248		79.935	51.448	1	270340			23555	298	15550	15705	31831;31832;31833;31834	31831		12			0.02857070345021384
VYMGLLAVF	9	Oxidation (M)	_VYM(Oxidation (M))GLLAVF_		VYM(1)GLLAVF		VYM(67)GLLAVF	0	0	1		ENST00000533687.1_1_11:118969111-118971155:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7761840820312	2	514.777896	1027.54124	0.335	0.00017245	-0.34778	-0.00017903	-0.012775	-6.5761E-06	514.7775216610125	89.014	0.78665	89.046	88.598	89.385	0.032257					73	31	3	0	0	0	0.0099253	4	21962	21962;22010;22057;22106		67.413	38.926	1	284570			23556	298	15550	15705	31835;31836;31837;31838	31835		12			0.02857070345021384
VYMGLLAVF	9	Oxidation (M)	_VYM(Oxidation (M))GLLAVF_		VYM(1)GLLAVF		VYM(56)GLLAVF	0	0	1		ENST00000533687.1_1_11:118969111-118971155:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.778076171875	2	514.777896	1027.54124	0.18926	9.7429E-05	-1.9049	-0.00098061	-1.7157	-0.00088318	515.2781667953158	91.113	1.2881	91.148	90.729	92.017	0.035446					135	47	4	0	0	0	0.02311	1	22627	22627		56.048	25.823	1	698680			23557	298	15550	15705	31839	31839		12			0.02857070345021384
VYMIRVYLL	9	Oxidation (M)	_VYM(Oxidation (M))IRVYLL_		VYM(1)IRVYLL		VYM(82)IRVYLL	0	0	1		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3384399414062	2	593.338652	1184.66275	0.092502	5.4885E-05	0.45776	0.00027161	0.55027	0.00032649	593.3387997035817	71.97	0.61613	71.97	71.701	72.317	0					58	21	3	0	0	0	0.0053304	1	16965	16965		81.613	60.742	1	545110			23558	3672	15551	15706	31840	31840		229			0.07780692707524395
VYMIRVYLL	9	Oxidation (M)	_VYM(Oxidation (M))IRVYLL_		VYM(1)IRVYLL		VYM(74)IRVYLL	0	0	1		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3385009765625	2	593.338652	1184.66275	0.0025555	1.5163E-06	0.49861	0.00029584	0.50116	0.00029736	593.3388756795549	72.762	0.99626	72.762	72.317	73.313	0					62	34	2	0	0	0	0.0076571	3	17193	17193;17241;17302		74.423	56.288	1	826830			23559	3672	15551	15706	31841;31842;31843	31841		229			0.07780692707524395
VYMIRVYLL	9	Oxidation (M)	_VYM(Oxidation (M))IRVYLL_		VYM(1)IRVYLL		VYM(55)IRVYLL	0	0	1		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3387451171875	2	593.338652	1184.66275	0.1328	7.8797E-05	0.39422	0.00023391	0.52702	0.0003127	593.3387507612367	71.851	0.61533	71.907	71.65	72.265	0.055939					52	21	3	0	0	0	0.024893	1	16794	16794		54.774	40.192	1	528720			23560	3672	15551	15706	31844	31844		229			0.07780692707524395
VYMIRVYLL	9	Oxidation (M)	_VYM(Oxidation (M))IRVYLL_		VYM(1)IRVYLL		VYM(82)IRVYLL	0	0	1		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3388671875	2	593.338652	1184.66275	0.11923	7.0745E-05	0.28262	0.00016769	0.40186	0.00023844	593.3386888203509	72.705	1.0619	72.761	72.207	73.269	0.055939					69	36	2	0	0	0	0.0053304	3	17063	17063;17109;17179		81.613	63.478	1	1008800			23561	3672	15551	15706	31845;31846;31847	31845		229			0.07780692707524395
VYMKATDDLFY	11	Unmodified	_VYMKATDDLFY_					0	0	0			REV__nc|ENSG00000140284|O14975-2|SLC27A2	REV__nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.2193908691406	3	455.88469	1364.63224	0.26069	0.00011884	0.22707	0.00010352	0.48776	0.00022236	455.88472039044484	104.38	0.22427	104.42	104.31	104.53	0.034004					32	20	2	0	0	0	0.40904	1	26664	26664		2.2527	0	1	389620	+		23562	9362	15552	15707	31848	31848					-0.03549130468172734
VYMLAASLL	9	Oxidation (M)	_VYM(Oxidation (M))LAASLL_		VYM(1)LAASLL		VYM(57)LAASLL	0	0	1		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7738342285156	2	498.775354	995.536154	0.56389	0.00028126	-1.2343	-0.00061566	-0.67045	-0.0003344	498.7743629602101	79.408	0.6265	79.408	79.188	79.815	0					34	21	2	0	0	0	0.021119	1	19281	19281		57.471	30.588	1	111730			23563	3180	15553	15708	31849	31849		206			0.03820766482419913
VYMLAASLL	9	Oxidation (M)	_VYM(Oxidation (M))LAASLL_		VYM(1)LAASLL		VYM(60)LAASLL	0	0	1		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.775146484375	2	498.775354	995.536154	0.28636	0.00014283	-0.90544	-0.00045161	-0.61908	-0.00030878	498.7745367140112	79.392	0.57974	79.418	79.162	79.742	0.026436					33	20	2	0	0	0	0.017037	1	19131	19131		60.39	31.903	1	111950			23564	3180	15553	15708	31850	31850		206			0.03820766482419913
VYMLPQIMMI	10	Unmodified	_VYMLPQIMMI_					0	0	0			REV__ENST00000495085.1_1_9:114659495-114685228:+|nuORF	REV__ENST00000495085.1_1_9:114659495-114685228:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8201293945312	2	619.820924	1237.62729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.908	1	18.908	18.408	19.408	0								0	0	0	0.34018	1	1235	1235		0	0	1		+		23565	12174	15554	15709	31851	31851					0.017985708638889264
VYMNAVWH	8	Unmodified	_VYMNAVWH_					0	0	0		ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2414245605469	2	510.242012	1018.46947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.674	1	18.674	18.174	19.174	0								0	0	0	0.38822	1	1177	1177		0.79363	0	1				23566	816	15555	15710	31852	31852					-0.03902424288844486
VYMSCFPFF	9	Unmodified	_VYMSCFPFF_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7903442382812	2	570.748282	1139.48201	0.79071	0.0004513	-0.58884	-0.00033608	0.20187	0.00011522	570.7480248739677	80.413	0.44552	80.413	80.228	80.674	0					29	15	3	0	0	0	0.2404	1	19637	19637		13.508	4.1248	1	132730	+		23567	12943	15556	15711	31853	31853					-0.08215148940803374
VYMSCFPFF	9	Unmodified	_VYMSCFPFF_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2796630859375	2	570.748282	1139.48201	0.62242	0.00035524	0.053907	3.0768E-05	0.67632	0.00038601	570.7481551394485	65.517	0.35947	65.517	65.372	65.732	0					21	13	2	0	0	0	0.25051	1	15019	15019		7.9102	1.187	1	97351	+		23568	12943	15556	15711	31854	31854					-0.08215148940803374
VYMSCFPFF	9	Unmodified	_VYMSCFPFF_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.286865234375	2	570.748282	1139.48201	0.39862	0.00022751	0.080302	4.5832E-05	0.47892	0.00027335	570.7480613937902	68.421	0.82616	68.421	68.186	69.012	0					48	30	2	0	0	0	0.22289	1	15993	15993		18.135	1.1927	1	97783	+		23569	12943	15556	15711	31855	31855					-0.08215148940803374
VYMSCFPFF	9	Unmodified	_VYMSCFPFF_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	570.748282	1139.48201	0.45987	0.00026247	0.12615	7.2E-05	0.58602	0.00033447	570.7482266596695	65.496	0.36902	65.563	65.365	65.734	0.066872	0.022901	4.527E-05	NaN	7.9102	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114870	+		23570	12943	15556	15711							-0.08215148940803374
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2898559570312	2	627.290314	1252.56607	0.12349	7.7462E-05	-0.24143	-0.00015145	-0.11794	-7.3985E-05	627.2895362911322	77.627	0.78677	77.627	77.389	78.176	0					62	28	3	0	0	0	0.083805	1	18712	18712		48.346	16.04	1	879800	+		23571	12943	15557	15712	31856	31856					-0.050106178439136784
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2907104492188	2	627.290314	1252.56607	0.5652	0.00035454	-0.3111	-0.00019515	0.25409	0.00015939	627.2901180974482	79.95	1.6203	79.95	79.282	80.902	0					153	56	4	0	0	0	0.083805	5	19406	19360;19406;19458;19602;19654		48.346	27.892	1	990830	+		23572	12943	15557	15712	31857;31858;31859;31860;31861	31858					-0.050106178439136784
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.7440795898438	2	627.290314	1252.56607	0.5652	0.00035454	-0.3111	-0.00019515	0.25409	0.00015939	627.2901180974482	79.95	1.6203	79.95	79.282	80.902	0					153	56	4	0	0	0	0.31616	1	19669	19669		10.074	2.1638	1	990830	+		23573	12943	15557	15712	31862	31862					-0.050106178439136784
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.7922973632812	2	627.290314	1252.56607	0.46451	0.00029138	-0.896	-0.00056205	-0.43149	-0.00027067	627.289121232593	77.618	0.90379	77.653	77.417	78.321	0.034485					72	30	3	0	0	0	0.19659	2	18539	18539;18550		34.102	8.7031	1	862780	+		23574	12943	15557	15712	31863;31864	31863					-0.050106178439136784
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.2907104492188	2	627.290314	1252.56607	0.52093	0.00032677	-0.39399	-0.00024714	0.12694	7.963E-05	627.2900968257811	80	1.7686	80.027	79.519	81.288	0.026436					155	62	4	0	0	0	0.083805	4	19257	19208;19257;19310;19457		48.346	20.717	1	1026300	+		23575	12943	15557	15712	31865;31866;31867;31868	31866					-0.050106178439136784
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.7922973632812	2	627.290314	1252.56607	0.46451	0.00029138	-0.896	-0.00056205	-0.43149	-0.00027067	627.289121232593	77.618	0.90379	77.653	77.417	78.321	0.034485					72	30	3	0	0	0	0.26256	1	18539	18539		34.102	8.7031	1	862780	+		23576	12943	15557	15712	31869	31869					-0.050106178439136784
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.3052368164062	2	627.290314	1252.56607	0.52093	0.00032677	-0.39399	-0.00024714	0.12694	7.963E-05	627.2900968257811	80	1.7686	80.027	79.519	81.288	0.026436					155	62	4	0	0	0	0.31616	1	19558	19558		10.074	3.3508	1	1026300	+		23577	12943	15557	15712	31870	31870					-0.050106178439136784
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	627.290314	1252.56607	0.12349	7.7462E-05	-0.24143	-0.00015145	-0.11794	-7.3985E-05	627.2895362911322	77.627	0.78677	77.627	77.389	78.176	0	-0.01272	0.00044484	NaN	48.346	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	879800	+		23578	12943	15557	15712							-0.050106178439136784
VYMVMVTGYF	10	Unmodified	_VYMVMVTGYF_					0	0	0			REV__ENSG00000176198|ENST00000641082|OR11H4	REV__ENSG00000176198|ENST00000641082|OR11H4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	403.5272521972656	3	403.860939	1208.56099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.991	1	68.055	67.555	68.555	0.063507								0	0	0	0.33855	1	15643	15643		1.9064	0.1641	1		+		23579	10398	15558	15713	31871	31871					-0.03494921706533205
VYNAPFWGV	9	Unmodified	_VYNAPFWGV_					0	0	0			REV__nc|ENSG00000141968|P15498-2|VAV1	REV__nc|ENSG00000141968|P15498-2|VAV1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7777709960938	2	526.763635	1051.51272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.075	1	24.075	23.575	24.575	0								0	0	0	0.28527	1	2584	2584		2.0598	1.2661	1		+		23580	9418	15559	15714	31872	31872					-0.010979112399127189
VYNDHSIYVW	10	Unmodified	_VYNDHSIYVW_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3055419921875	2	648.306395	1294.59824	0.1101	7.138E-05	-0.19406	-0.00012581	-0.083955	-5.4428E-05	648.3063271637693	60.786	0.48158	60.859	60.689	61.171	0.073421					26	16	2	0	0	0	0.4101	1	13502	13502		10.8	4.0763	1	289760			23581	2867	15560	15715	31873	31873					-0.03727790844914125
VYNENLVHMI	10	Oxidation (M)	_VYNENLVHM(Oxidation (M))I_		VYNENLVHM(1)I		VYNENLVHM(72)I	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3081665039062	2	624.308081	1246.60161	-0.0967	-6.0371E-05	-0.074949	-4.6791E-05	-0.17165	-0.00010716	624.3081113635462	51.555	1.6062	51.555	51.152	52.758	0					138	55	4	0	0	0	0.015562	5	10775	10728;10775;10820;10868;10917		71.708	58.665	1	457260			23582	1975	15561	15716	31874;31875;31876;31877;31878	31875		120			-0.011828640625481057
VYNENLVHMI	10	Oxidation (M)	_VYNENLVHM(Oxidation (M))I_		VYNENLVHM(1)I		VYNENLVHM(100)I	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.3084106445312	2	624.308081	1246.60161	0.039764	2.4825E-05	0.27185	0.00016972	0.31161	0.00019454	624.3082651309035	49.327	0.63583	49.404	49.185	49.821	0.076607					59	22	3	0	0	0	5.8794E-05	1	9997	9997		103.82	79.803	1	669500			23583	1975	15561	15716	31879	31879		120			-0.011828640625481057
VYNENLVHMI	10	Oxidation (M)	_VYNENLVHM(Oxidation (M))I_		VYNENLVHM(1)I		VYNENLVHM(76)I	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.30810546875	2	624.308081	1246.60161	0.16802	0.0001049	-0.049422	-3.0855E-05	0.1186	7.4041E-05	624.3080948813455	51.478	1.3366	51.548	51.105	52.441	0.069878					116	51	3	0	0	0	0.010985	4	10612	10566;10612;10704;10746		75.571	55.156	1	385190			23584	1975	15561	15716	31880;31881;31882;31883	31881		120			-0.011828640625481057
VYNEQIRDLL	10	Unmodified	_VYNEQIRDLL_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.8407592773438	2	631.840602	1261.66665	0.35432	0.00022388	-0.080606	-5.093E-05	0.27372	0.00017295	631.8406006974689	60.318	0.46707	60.318	60.091	60.558	0					25	16	2	0	0	0	0.33477	1	13445	13445		25.997	15.198	1	147550			23585	2156	15562	15717	31884	31884					0.046284537349492894
VYNFFHQYF	9	Unmodified	_VYNFFHQYF_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|141|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|141|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|141|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.19940185546875	3	422.197708	1263.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.879	1	77.879	77.379	78.379	0								0	0	0	0.28946	1	18817	18817		1.1933	0.41681	1				23586	7402	15563	15718	31885	31885					-0.049948546654377424
VYNFNGSRDL	10	Unmodified	_VYNFNGSRDL_					0	0	0		GLB1L|p.T342Hfs*29|1|0.31|ENSG00000163521|chr2:219239131-219239131|G/-|frameshift_variant;nc|ENSG00000163521|Q6UWU2-2|GLB1L;ENSG00000163521|ENST00000295759|GLB1L	GLB1L|p.T342Hfs*29|1|0.31|ENSG00000163521|chr2:219239131-219239131|G/-|frameshift_variant	GLB1L|p.T342Hfs*29|1|0.31|ENSG00000163521|chr2:219239131-219239131|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3052978515625	2	592.78837	1183.56219	0.25887	0.00015345	-0.92957	-0.00055104	-0.6707	-0.00039758	592.7881192004807	87.603	0.10361	87.633	87.582	87.686	0.030037					5	3	2	0	0	0	0.31496	1	21607	21607		13.906	0	1	44782			23587	3912	15564	15719	31886	31886					-0.022252480217503035
VYNIHLAVNF	10	Unmodified	_VYNIHLAVNF_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3220825195312	2	595.321848	1188.62914	0.35756	0.00021287	-0.052549	-3.1284E-05	0.30501	0.00018158	595.321866647123	68.477	1.3094	68.477	68.186	69.496	0					145	47	5	0	0	0	1.1116E-05	5	15939	15939;16142;16176;16185;16196		134.3	92.456	1	6120500			23588	5400	15565	15720	31887;31888;31889;31890;31891	31887					0.04237407260006876
VYNIHLAVNF	10	Unmodified	_VYNIHLAVNF_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3216552734375	2	595.321848	1188.62914	0.44964	0.00026768	0.56311	0.00033523	1.0128	0.00060292	595.3215423470781	69.609	0.43768	69.609	69.496	69.933	0					23	14	2	0	0	0	0.31565	1	16334	16334		8.1555	0.54658	1	130020			23589	5400	15565	15720	31892	31892					0.04237407260006876
VYNIHLAVNF	10	Unmodified	_VYNIHLAVNF_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3220825195312	2	595.321848	1188.62914	0.2383	0.00014186	0.10213	6.08E-05	0.34043	0.00020266	595.32190763143	68.384	1.2297	68.447	68.192	69.421	0.063507					142	46	5	0	0	0	3.524E-05	3	15809	15766;15809;16001		122.18	102.92	1	6017100			23590	5400	15565	15720	31893;31894;31895	31894					0.04237407260006876
VYNIHLAVNF	10	Unmodified	_VYNIHLAVNF_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3206176757812	2	595.321848	1188.62914	0.16451	9.7934E-05	0.0090447	5.3845E-06	0.17355	0.00010332	595.3215681000795	69.536	0.49223	69.598	69.449	69.942	0.062126					33	17	3	0	0	0	0.17902	1	16147	16147		36.127	19.978	1	118150			23591	5400	15565	15720	31896	31896					0.04237407260006876
VYNKELKTDF	10	Unmodified	_VYNKELKTDF_					0	0	0		ENST00000465553.5_1_X:154508114-154563754:-|nuORF;ENSG00000155962|ENST00000369449|CLIC2	ENST00000465553.5_1_X:154508114-154563754:-|nuORF	ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.3154602050781	3	419.555561	1255.64485	0.61128	0.00025647	0.073942	3.1023E-05	0.68523	0.00028749	419.5555679864545	55.727	0.59694	55.727	55.497	56.094	0					30	20	2	0	0	0	0.31833	1	12116	12116		2.086	0	1	96595			23592	3603	15566	15721	31897	31897					0.027256489863702882
VYNKELKTDF	10	Unmodified	_VYNKELKTDF_					0	0	0		ENST00000465553.5_1_X:154508114-154563754:-|nuORF;ENSG00000155962|ENST00000369449|CLIC2	ENST00000465553.5_1_X:154508114-154563754:-|nuORF	ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	419.555561	1255.64485	0.18828	7.8994E-05	0.44601	0.00018712	0.63429	0.00026612	419.55578273994854	55.635	0.49293	55.701	55.517	56.01	0.065128	-0.013048	0.00017568	NaN	2.086	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69766			23593	3603	15566	15721							0.027256489863702882
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.794677734375	2	543.818941	1085.62333	-0.5588	-0.00030389	-1.0332	-0.00056188	-1.592	-0.00086577	543.8182062939126	41.945	0.25529	41.945	41.829	42.084	0					14	8	2	0	0	0	0.24635	1	7895	7895		10.824	4.6181	1	35798			23594	4143	15567	15722	31898	31898					0.08394308748324875
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7947998046875	2	543.818941	1085.62333	-0.32243	-0.00017534	-0.34073	-0.00018529	-0.66316	-0.00036064	543.8184744336195	41.861	0.25656	41.951	41.816	42.072	0.089764					15	9	2	0	0	0	0.25281	1	7732	7732		6.7232	4.1457	1	39627			23595	4143	15567	15722	31899	31899					0.08394308748324875
VYNNIMRHYL	10	Unmodified	_VYNNIMRHYL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	441.5606994628906	3	441.560652	1321.66013	0.35532	0.0001569	-0.30897	-0.00013643	0.046354	2.0468E-05	441.56046346347773	48.401	1.53	48.401	48.123	49.653	0					115	52	4	0	0	0	0.17079	3	9808	9808;9911;9986		37.075	17.931	1	795670			23596	1892	15568	15723	31900;31901;31902	31900					0.012162373025830675
VYNNIMRHYL	10	Unmodified	_VYNNIMRHYL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.5605773925781	3	441.560652	1321.66013	0.19377	8.5561E-05	-0.20707	-9.1433E-05	-0.013298	-5.8717E-06	441.5605526900523	48.312	1.0329	48.392	48.155	49.188	0.080029					94	35	5	0	0	0	0.22608	3	9691	9642;9691;9755		30.703	19.638	1	799440			23597	1892	15568	15723	31903;31904;31905	31904					0.012162373025830675
VYNNKVFGE	9	Unmodified	_VYNNKVFGE_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.809814453125	2	535.269281	1068.52401	0.37818	0.00020243	-0.71681	-0.00038369	-0.33864	-0.00018126	535.2688877747814	37.897	0.53268	37.897	37.675	38.207	0					23	18	2	0	0	0	0.25504	1	6596	6596		4.756	0.81161	1	38752			23598	587	15569	15724	31906	31906					-0.007511339364327796
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3032836914062	2	557.302593	1112.59063	0.43988	0.00024514	0.19061	0.00010623	0.63049	0.00035137	557.3025311574478	87.358	0.66493	87.358	87.043	87.708	0					64	25	4	0	0	0	0.0044242	3	21694	21694;21740;21753		93.883	57.756	1	669740			23599	601	15570	15725	31907;31908;31909	31907					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3026733398438	2	557.302593	1112.59063	0.42078	0.0002345	0.2399	0.0001337	0.66068	0.0003682	557.3025581222552	87.313	0.78228	87.34	86.982	87.764	0.027573					68	31	4	0	0	0	0.0044242	1	21551	21551		93.883	57.756	1	649400			23600	601	15570	15725	31910	31910					0.03884101625453695
VYNPVRAEW	9	Unmodified	_VYNPVRAEW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.30810546875	2	567.290548	1132.56654	0.12199	6.9203E-05	0.6626	0.00037589	0.78459	0.00044509	567.29095707212	52.118	0.53781	52.118	51.886	52.424	0					38	18	3	0	0	0	0.20358	1	10964	10964		18.146	6.5061	1	137100			23601	4091	15571	15726	31911	31911					0.005562611917866889
VYNPVRAEW	9	Unmodified	_VYNPVRAEW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.308349609375	2	567.290548	1132.56654	0.21951	0.00012453	0.26261	0.00014897	0.48212	0.0002735	567.2906721668521	52.075	0.55428	52.142	51.938	52.493	0.067169					31	21	2	0	0	0	0.23908	1	10808	10808		16.149	8.239	1	114230			23602	4091	15571	15726	31912	31912					0.005562611917866889
VYNRAALLW	9	Unmodified	_VYNRAALLW_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3113403320312	2	553.311284	1104.60801	0.30607	0.00016935	0.30399	0.0001682	0.61006	0.00033755	553.3115137140671	59.435	0.46103	59.435	59.219	59.68	0					24	17	2	0	0	0	0.05573	2	13185	13177;13185		42.095	15.753	1	106200			23603	671	15572	15727	31913;31914	31914					0.059894419511238084
VYNRAALLW	9	Unmodified	_VYNRAALLW_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3107299804688	2	553.311284	1104.60801	0.38558	0.00021335	0.34672	0.00019184	0.7323	0.00040519	553.3114716610031	59.324	0.39879	59.397	59.224	59.623	0.072338					30	14	3	0	0	0	0.16036	1	13016	13016		23.148	2.2772	1	118860			23604	671	15572	15727	31915	31915					0.059894419511238084
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.2642211914062	2	611.264196	1220.51384	0.076511	4.6769E-05	0.096234	5.8825E-05	0.17275	0.00010559	611.2641342582257	51.143	1.9184	51.143	50.922	52.841	0					155	66	4	0	0	0	9.2424E-18	4	10686	10642;10686;10734;10786		206.75	177.67	1	2108800			23605	1768	15573	15728	31916;31917;31918;31919	31917					-0.08759741661674525
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.2642822265625	2	611.264196	1220.51384	0.26662	0.00016297	-0.0085037	-5.198E-06	0.25811	0.00015777	611.2640799046411	51.076	1.4858	51.145	50.909	52.395	0.069878					131	57	4	0	0	0	9.2424E-18	4	10512	10474;10512;10554;10597		206.75	170.62	1	1898100			23606	1768	15573	15728	31920;31921;31922;31923	31921					-0.08759741661674525
VYNSFKYLF	9	Unmodified	_VYNSFKYLF_					0	0	0		tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8048706054688	2	590.8055	1179.59645	0.55162	0.0003259	-2.5774	-0.0015227	-2.0258	-0.0011968	590.8044303871588	96.982	0.2883	96.982	96.888	97.176	0					24	15	2	0	0	0	0.27929	1	24661	24661		9.3831	1.473	1	126870			23607	13522	15574	15729	31924	31924					0.013832001371156366
VYNSFKYLF	9	Unmodified	_VYNSFKYLF_					0	0	0		tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	590.8055	1179.59645	0.60656	0.00035836	-3.5751	-0.0021122	-2.9685	-0.0017538	590.8039236054478	96.941	0.17152	96.981	96.939	97.111	0.039772	-0.00051655	-0.00077846	NaN	9.3831	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169660			23608	13522	15574	15729							0.013832001371156366
VYNTDTDEWE	10	Unmodified	_VYNTDTDEWE_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.255859375	2	636.256765	1270.49898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.394	1	26.486	25.986	26.986	0.091507								0	0	0	0.33979	1	3118	3118		0.45834	0	1				23609	4212	15575	15730	31925	31925					-0.12545278320294528
VYNYSKTLF	9	Unmodified	_VYNYSKTLF_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-3|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-3|PIEZO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3193359375	2	567.795132	1133.57571	0.3504	0.00019895	-2.8198	-0.0016011	-2.4694	-0.0014021	567.7934717465663	47.527	0.41453	47.527	47.349	47.763	0					21	13	2	0	0	0	0.25051	1	9548	9548		7.9102	0	1	74050	+		23610	9719	15576	15731	31926	31926					0.014266097574591186
VYPADVVLF	9	Unmodified	_VYPADVVLF_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.78131103515625	2	511.781493	1021.54843	0.60518	0.00030972	-0.44335	-0.0002269	0.16183	8.2821E-05	511.7810603664455	85.182	0.84227	85.182	84.865	85.708	0					65	33	3	0	0	0	0.017037	3	21005	21005;21064;21110		60.39	24.345	1	267510			23611	3136	15577	15732	31927;31928;31929	31927					0.038521262170888804
VYPADVVLF	9	Unmodified	_VYPADVVLF_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7816162109375	2	511.781493	1021.54843	0.66453	0.0003401	-0.41881	-0.00021434	0.24572	0.00012575	511.7811943886768	85.215	1.0667	85.239	84.83	85.897	0.023125					79	42	3	0	0	0	0.0099477	3	20893	20847;20893;20940		67.344	22.937	1	320710			23612	3136	15577	15732	31930;31931;31932	31931					0.038521262170888804
VYPAGFVYI	9	Unmodified	_VYPAGFVYI_					0	0	0		ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ACTL6A-ALG3|1|fusion	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7763061523438	2	514.776211	1027.53787	0.86245	0.00044397	-0.27819	-0.00014321	0.58425	0.00030076	514.7758515036223	81.202	0.9391	81.202	80.931	81.87	0					59	31	3	0	0	0	0.02311	2	19816	19816;19863		56.048	35.177	1	368480			23613	8	15578	15733	31933;31934	31933					0.025201435626513558
VYPAGFVYI	9	Unmodified	_VYPAGFVYI_					0	0	0		ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ACTL6A-ALG3|1|fusion	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7764892578125	2	514.776211	1027.53787	0.57783	0.00029746	0.15497	7.9776E-05	0.73281	0.00037723	514.7760799311856	81.166	0.5518	81.19	80.973	81.524	0.023605					48	19	3	0	0	0	0.0099253	4	19668	19619;19668;19676;19729		67.413	46.542	1	433980			23614	8	15578	15733	31935;31936;31937;31938	31936					0.025201435626513558
VYPARTQTL	9	Unmodified	_VYPARTQTL_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7930297851562	2	524.792924	1047.57129	0.019203	1.0078E-05	0.060841	3.1929E-05	0.080044	4.2006E-05	524.7929106614226	34.585	1.3876	34.585	34.317	35.705	0					136	51	5	0	0	0	0.024248	2	5662	5662;5704		55.235	24.598	1	1151400			23615	5369	15579	15734	31939;31940	31939					0.049411453345555856
VYPARTQTL	9	Unmodified	_VYPARTQTL_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7930297851562	2	524.792924	1047.57129	-0.029011	-1.5225E-05	0.16643	8.7341E-05	0.13742	7.2116E-05	524.792964368559	34.525	1.0393	34.601	34.365	35.404	0.076244					133	45	5	0	0	0	0.0085356	3	5526	5478;5526;5567		71.708	41.071	1	1084300			23616	5369	15579	15734	31941;31942;31943	31942					0.049411453345555856
VYPASPSSWLI	11	Unmodified	_VYPASPSSWLI_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.8389282226562	2	610.321514	1218.62847	0.46808	0.00028568	-0.49645	-0.000303	-0.028368	-1.7314E-05	610.3204871982706	84.189	0.2849	84.211	84.01	84.295	0.021744					21	9	3	0	0	0	0.26943	1	20573	20573		21.537	9.0054	1	183340			23617	1654	15580	15735	31944	31944					0.027905678202841955
VYPASPSSWLI	11	Unmodified	_VYPASPSSWLI_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.3209228515625	2	610.321514	1218.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.301	1	84.323	83.823	84.823	0.021744								0	0	0	0.14683	1	20612	20612		39.95	22.507	1				23618	1654	15580	15735	31945	31945					0.027905678202841955
VYPAVMVLL	9	Oxidation (M)	_VYPAVM(Oxidation (M))VLL_		VYPAVM(1)VLL		VYPAVM(56)VLL	0	0	1		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7940979003906	2	510.793546	1019.57254	0.42417	0.00021667	0.6987	0.00035689	1.1229	0.00057356	510.7936954679036	83.103	0.85609	83.103	82.595	83.451	0					52	29	2	0	0	0	0.02311	2	20354	20354;20401		56.048	35.177	1	149860			23619	1499	15581	15736	31946;31947	31946		91			0.06353643379111418
VYPAVMVLL	9	Oxidation (M)	_VYPAVM(Oxidation (M))VLL_		VYPAVM(1)VLL		VYPAVM(46)VLL	0	0	1		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.79388427734375	2	510.793546	1019.57254	0.28805	0.00014713	0.6162	0.00031475	0.90425	0.00046189	510.79380397309114	82.923	1.0174	82.945	82.454	83.471	0.021744					59	35	2	0	0	0	0.038949	1	20239	20239		45.75	36.403	1	165770			23620	1499	15581	15736	31948	31948		91			0.06353643379111418
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.2930908203125	2	535.293091	1068.57163	0.3347	0.00017916	-0.04344	-2.3253E-05	0.29126	0.00015591	535.293027235149	37.296	1.7163	37.296	37.065	38.781	0					126	61	4	0	0	0	0.034936	1	6495	6495		47.594	28.337	1	884660			23621	5191	15582	15737	31949	31949					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.2931518554688	2	535.293091	1068.57163	0.52319	0.00028006	-0.10704	-5.7296E-05	0.41616	0.00022277	535.2930321942462	37.159	0.96824	37.243	37.046	38.014	0.084476					100	33	4	0	0	0	0.034936	2	6316	6316;6356		47.594	28.337	1	953850			23622	5191	15582	15737	31950;31951	31950					0.04008565054414248
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3396606445312	2	598.339707	1194.66486	-0.43559	-0.00026063	0.36873	0.00022062	-0.066859	-4.0005E-05	598.3398685169216	42.445	0.51662	42.445	42.279	42.796	0					43	17	3	0	0	0	0.43214	1	8023	8023		8.1555	1.4324	1	170820			23623	2811	15583	15738	31952	31952					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.841064453125	2	598.339707	1194.66486	-0.32396	-0.00019384	0.44083	0.00026377	0.11687	6.993E-05	598.339888397841	42.378	0.52084	42.468	42.291	42.812	0.089764					39	18	3	0	0	0	0.4101	1	7873	7873		10.8	4.0763	1	149760			23624	2811	15583	15738	31953	31953					0.07531444716960323
VYPFENFEF	9	Unmodified	_VYPFENFEF_					0	0	0		nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.7979125976562	2	596.27149	1190.52843	0.13131	7.8296E-05	0.57509	0.00034291	0.7064	0.00042121	596.2716395062757	90.133	0.95115	90.133	89.933	90.885	0					71	37	3	0	0	0	0.0065616	1	22577	22577		89.401	54.999	1	1674000			23625	7488	15584	15739	31954	31954					-0.05921669513531924
VYPFENFEF	9	Unmodified	_VYPFENFEF_					0	0	0		nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.2733764648438	2	596.27149	1190.52843	-0.12683	-7.5628E-05	0.99872	0.00059551	0.87188	0.00051988	596.2719729028756	90.142	1.1116	90.176	89.932	91.043	0.034065					87	45	3	0	0	0	0.026809	1	22470	22470		53.404	25.775	1	1090100			23626	7488	15584	15739	31955	31955					-0.05921669513531924
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2822875976562	2	532.282192	1062.54983	0.47356	0.00025207	-0.27896	-0.00014849	0.1946	0.00010358	532.2821022766212	60.595	1.1584	60.595	60.26	61.418	0					103	41	3	0	0	0	0.27332	1	13509	13509		10.074	2.7847	1	869620			23627	4416	15585	15740	31956	31956					0.021057603058579843
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.282470703125	2	532.282192	1062.54983	0.36196	0.00019266	-0.2089	-0.00011119	0.15306	8.1472E-05	532.282096816777	60.542	1.2032	60.615	60.211	61.414	0.073421					105	41	4	0	0	0	0.22861	1	13380	13380		15.248	5.1746	1	820850			23628	4416	15585	15740	31957	31957					0.021057603058579843
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7789611816406	2	506.778754	1011.54295	0.33415	0.00016934	0.23148	0.00011731	0.56562	0.00028665	506.7788206644072	94.328	1.0433	94.328	94.006	95.049	0					133	46	4	0	0	0	0.0030805	6	23813	23776;23813;23855;23898;23958;24034		109.15	0	1	2990600			23629	3092	15586	15741	31958;31959;31960;31961;31962;31963	31959					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.77880859375	2	506.778754	1011.54295	0.19102	9.6804E-05	0.086189	4.3679E-05	0.27721	0.00014048	506.7787239769562	95.402	0.44144	95.402	95.049	95.491	0					30	18	3	0	0	0	0.081567	1	24103	24103		36.466	0	1	116130			23630	3092	15586	15741	31964	31964					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7789306640625	2	506.778754	1011.54295	0.28915	0.00014654	0.30812	0.00015615	0.59727	0.00030268	506.7788395299464	94.295	1.0591	94.333	93.983	95.042	0.038086					130	46	4	0	0	0	0.0030805	4	23658	23616;23658;23700;23743		109.15	0	1	2859200			23631	3092	15586	15741	31965;31966;31967;31968	31966					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7783508300781	2	506.778754	1011.54295	0.15586	7.8985E-05	-0.087321	-4.4252E-05	0.068537	3.4733E-05	506.7785358674105	95.369	0.43411	95.408	95.043	95.477	0.038872					24	17	2	0	0	0	0.02311	2	23951	23884;23951		56.048	0	1	90599			23632	3092	15586	15741	31969;31970	31970					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7786865234375	2	506.778754	1011.54295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.446	1	95.485	94.985	95.985	0.038872								0	0	0	0.059835	1	24003	24003		45.75	0	1				23633	3092	15586	15741	31971	31971					0.037644474252715554
VYPGYYFTF	9	Unmodified	_VYPGYYFTF_					0	0	0		ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2576293945312	2	578.771126	1155.5277	0.36193	0.00020947	-0.084102	-4.8676E-05	0.27782	0.0001608	578.7708267555317	85.957	0.77266	85.957	85.757	86.529	0					79	29	4	0	0	0	0.063247	1	21283	21283		53.576	23.351	1	409630			23634	4482	15587	15742	31972	31972					-0.043844641625810254
VYPGYYFTF	9	Unmodified	_VYPGYYFTF_					0	0	0		ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7713012695312	2	578.771126	1155.5277	0.56524	0.00032714	-0.67714	-0.00039191	-0.11191	-6.4768E-05	578.770506165548	85.914	0.63704	85.939	85.75	86.387	0.025169					72	22	4	0	0	0	0.091303	1	21127	21127		44.407	6.2558	1	403490			23635	4482	15587	15742	31973	31973					-0.043844641625810254
VYPGYYLTF	9	Unmodified	_VYPGYYLTF_					0	0	0		ENST00000494760.1_1_2:9002596-9008596:-|nuORF;ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7791137695312	2	561.778951	1121.54335	0.50562	0.00028405	0.19497	0.00010953	0.70059	0.00039358	561.7787051627372	82.686	0.77782	82.686	82.364	83.141	0					82	26	4	0	0	0	0.0072903	1	20310	20310		81.864	54.98	1	914030			23636	3182	15588	15743	31974	31974					-0.012561776455413565
VYPGYYLTF	9	Unmodified	_VYPGYYLTF_					0	0	0		ENST00000494760.1_1_2:9002596-9008596:-|nuORF;ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7791137695312	2	561.778951	1121.54335	0.38454	0.00021603	0.34826	0.00019564	0.7328	0.00041167	561.7788088063313	82.677	1.0631	82.699	82.377	83.44	0.021744					89	37	4	0	0	0	0.0072903	1	20135	20135		81.864	59.128	1	863710			23637	3182	15588	15743	31975	31975					-0.012561776455413565
VYPLAAAFAVL	11	Unmodified	_VYPLAAAFAVL_					0	0	0		nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.8316650390625	2	567.831517	1133.64848	0.37286	0.00021172	0.20969	0.00011907	0.58255	0.00033079	567.8315142300918	100.28	0.83129	100.28	99.887	100.72	0					102	45	3	0	0	0	0.025724	4	25671	25593;25631;25671;25722		63.563	51.923	1	183390			23638	37	15589	15744	31976;31977;31978;31979	31978					0.08700363550883594
VYPLAAAFAVL	11	Unmodified	_VYPLAAAFAVL_					0	0	0		nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8314208984375	2	567.831517	1133.64848	0.44759	0.00025415	0.24097	0.00013683	0.68856	0.00039099	567.8315577864063	100.17	0.77158	100.21	99.872	100.64	0.042839					74	44	2	0	0	0	0.025724	3	25416	25416;25461;25503		63.563	44.306	1	197580			23639	37	15589	15744	31980;31981;31982	31980					0.08700363550883594
VYPLALYGF	9	Unmodified	_VYPLALYGF_					0	0	0		nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7842407226562	2	521.784036	1041.55352	0.30428	0.00015877	-0.61726	-0.00032208	-0.31298	-0.00016331	521.7838945684944	90.691	0.4436	90.691	90.467	90.911	0					36	16	3	0	0	0	0.038949	1	22701	22701		45.75	36.403	1	399080			23640	3146	15590	15745	31983	31983					0.03440430079695034
VYPLALYGF	9	Unmodified	_VYPLALYGF_					0	0	0		nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7843017578125	2	521.784036	1041.55352	-0.046556	-2.4292E-05	0.080891	4.2208E-05	0.034335	1.7916E-05	521.7841937146505	90.631	0.48645	90.665	90.449	90.935	0.034065					44	19	3	0	0	0	0.02311	2	22525	22525;22565		56.048	44.408	1	423500			23641	3146	15590	15745	31984;31985	31984					0.03440430079695034
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(110)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2999267578125	2	603.299193	1204.58383	0.48619	0.00029332	0.28168	0.00016994	0.76787	0.00046325	603.2993819495507	56.975	1.4122	56.975	56.805	58.217	0					192	50	5	0	0	0	0.0034419	6	12428	12428;12465;12509;12653;12699;12752		106.94	72.838	1	6635200			23642	1161	15591	15746	31986;31987;31988;31989;31990;31991	31986		64			-0.010275793174287173
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(130)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.299560546875	2	603.299193	1204.58383	0.23392	0.00014113	0.19438	0.00011727	0.42831	0.0002584	603.2993757251384	58.717	3.2778	58.717	58.256	61.534	0					406	124	5	0	0	0	0.00061878	13	13017	12889;12931;12974;13017;13141;13187;13232;13275;13321;13367;13419;13464;13595		129.77	104.37	1	8495200			23643	1161	15591	15746	31992;31993;31994;31995;31996;31997;31998;31999;32000;32001;32002;32003;32004	31995		64			-0.010275793174287173
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(69)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2984619140625	2	603.299193	1204.58383	0.35986	0.0002171	0.47174	0.0002846	0.8316	0.0005017	603.2993261785716	56.65	0.42558	56.65	56.379	56.805	0					60	15	5	0	0	0	0.028282	1	12368	12368		69.105	27.01	1	4897300			23644	1161	15591	15746	32005	32005		64			-0.010275793174287173
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(93)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.3002319335938	2	603.299193	1204.58383	0.59698	0.00036016	0.25207	0.00015208	0.84905	0.00051223	603.2993298440183	56.91	1.3846	56.977	56.795	58.18	0.066448					149	52	5	0	0	0	0.0044564	5	12260	12260;12308;12349;12490;12537		92.653	70.907	1	5866100			23645	1161	15591	15746	32006;32007;32008;32009;32010	32006		64			-0.010275793174287173
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(120)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2996826171875	2	603.299193	1204.58383	0.42954	0.00025914	0.01461	8.8143E-06	0.44415	0.00026796	603.299266425695	58.662	3.3297	58.733	58.136	61.466	0.070477					424	123	5	0	0	0	0.0016252	12	12807	12714;12760;12807;12849;12985;13032;13075;13118;13159;13200;13252;13299		118.07	92.669	1	8452600			23646	1161	15591	15746	32011;32012;32013;32014;32015;32016;32017;32018;32019;32020;32021;32022	32013		64			-0.010275793174287173
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(63)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2979736328125	2	603.299193	1204.58383	0.48754	0.00029413	0.43413	0.00026191	0.92167	0.00055604	603.2992349894101	56.588	0.51559	56.655	56.28	56.795	0.066448					58	18	5	0	0	0	0.04667	1	12197	12197		62.573	39.836	1	4217900			23647	1161	15591	15746	32023	32023		64			-0.010275793174287173
VYPLMKEYF	9	Unmodified	_VYPLMKEYF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3017578125	2	595.301736	1188.58892	0.66646	0.00039674	-0.26026	-0.00015493	0.4062	0.00024181	595.301517346441	66.236	1.9647	66.236	65.704	67.669	0					236	73	5	0	0	0	0.01961	1	15263	15263		72.968	40.851	1	3586700			23648	1161	15591	15747	32024	32024					0.0021672454518011364
VYPLMKEYF	9	Unmodified	_VYPLMKEYF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3019409179688	2	595.301736	1188.58892	0.47231	0.00028117	-0.029458	-1.7536E-05	0.44286	0.00026363	595.3016733646797	66.27	2.0268	66.337	65.788	67.815	0.066872					229	74	5	0	0	0	0.023873	1	15166	15166		55.503	15.054	1	3667700			23649	1161	15591	15747	32025	32025					0.0021672454518011364
VYPLQPEYTL	10	Unmodified	_VYPLQPEYTL_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.2060546875	3	408.216657	1221.62814	0.47697	0.00019471	3.8938	0.0015895	4.3708	0.0017842	408.2180885145392	37.456	0.18404	37.456	37.393	37.577	0					9	6	2	0	0	0	0.46521	1	6552	6552		1.9064	0.71303	1	10445	+		23650	8494	15592	15748	32026	32026					0.026191481004161687
VYPLYTIVF	9	Unmodified	_VYPLYTIVF_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.81298828125	2	557.812793	1113.61103	0.42709	0.00023824	-0.1635	-9.1202E-05	0.26359	0.00014703	557.8127049861889	94.974	0.81425	94.974	94.59	95.405	0					107	33	4	0	0	0	0.00065346	2	24036	23992;24036		129.2	84.793	1	1653000			23651	579	15593	15749	32027;32028	32028					0.05877272285283652
VYPLYTIVF	9	Unmodified	_VYPLYTIVF_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8129272460938	2	557.812793	1113.61103	0.43872	0.00024473	-0.16576	-9.2462E-05	0.27297	0.00015226	557.8126928380734	94.98	0.80987	95.019	94.64	95.45	0.038864					102	33	4	0	0	0	1.4475E-05	3	23858	23817;23858;23905		144.66	100.25	1	1272500			23652	579	15593	15749	32029;32030;32031	32030					0.05877272285283652
VYPMPQDFVP	10	Unmodified	_VYPMPQDFVP_					0	0	0		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.8037719726562	2	596.788992	1191.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.5	1	63.5	63	64	0								0	0	0	0.33022	1	14427	14427		11.64	0.81637	1				23653	5772	15594	15750	32032	32032					-0.024687499772198862
VYPMPQDFVP	10	Unmodified	_VYPMPQDFVP_					0	0	0		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.8041381835938	2	596.788992	1191.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.517	1	63.588	63.088	64.088	0.071018								0	0	0	0.33395	1	14290	14290		7.2892	0	1				23654	5772	15594	15750	32033	32033					-0.024687499772198862
VYPNRRSW	8	Unmodified	_VYPNRRSW_					0	0	0			REV__ENST00000576551.5_1_17:5381279-5384450:-|nuORF	REV__ENST00000576551.5_1_17:5381279-5384450:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2684936523438	2	539.283057	1076.55156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.9	1	79.9	79.4	80.4	0								0	0	0	0.38822	1	19432	19432		9.3474	1.4373	1		+		23655	8171	15595	15751	32034	32034					0.016348141144590045
VYPNSTCK	8	Unmodified	_VYPNSTCK_					0	0	0		nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1	nc|ENSG00000105173|P24864-2|CCNE1	nc|ENSG00000105173|P24864-2|CCNE1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.2193908691406	2	456.218203	910.421853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.72	1	104.72	104.22	105.22	0								0	0	0	0.38822	1	26955	26955		5.2307	2.3415	1				23656	1451	15596	15752	32035	32035					-0.036941232797062185
VYPNWAIGL	9	Unmodified	_VYPNWAIGL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2921752929688	2	516.779285	1031.54402	0.32987	0.00017047	-0.069991	-3.617E-05	0.25988	0.0001343	516.7790654300661	82.633	0.44996	82.654	82.454	82.904	0.021744					37	15	3	0	0	0	0.030375	2	20145	20085;20145		50.855	31.416	1	401400			23657	2528	15597	15753	32036;32037	32037					0.02950661794170628
VYPPIRHHL	9	Unmodified	_VYPPIRHHL_					0	0	0		nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.3251953125	2	566.324725	1130.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.359	1	30.434	29.934	30.934	0.075403								0	0	0	0.28631	1	4281	4281		1.8442	0	1				23658	3606	15598	15754	32038	32038					0.07480550562308963
VYPPTQTVI	9	Unmodified	_VYPPTQTVI_					0	0	0			REV__nc|ENSG00000138709|Q659C4-4|LARP1B	REV__nc|ENSG00000138709|Q659C4-4|LARP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.284423828125	2	509.2844	1016.55425	0.34019	0.00017325	0.057477	2.9272E-05	0.39766	0.00020252	509.2843476134995	76.147	1.0315	76.186	75.908	76.94	0.03923					106	48	3	0	0	0	0.10067	1	18055	18055		32.305	4.6767	1	3135000	+		23659	9324	15599	15755	32039	32039					0.04663224728756177
VYPTVKNQL	9	Unmodified	_VYPTVKNQL_					0	0	0			REV__ENST00000528393.1_1_11:79698696-79699011:+|nuORF	REV__ENST00000528393.1_1_11:79698696-79699011:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3032836914062	2	531.303124	1060.5917	0.59083	0.00031391	-0.42354	-0.00022503	0.16729	8.8882E-05	531.3030287982506	54.886	0.95104	54.886	54.657	55.608	0					60	34	2	0	0	0	0.26684	1	11881	11881		10.824	0.024421	1	806040	+		23660	12341	15600	15756	32040	32040					0.06382315994369492
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5693359375	3	405.569253	1213.68593	0.39693	0.00016098	-0.059724	-2.4222E-05	0.3372	0.00013676	405.56906880259135	49.572	0.62796	49.572	49.34	49.968	0					43	21	3	0	0	0	0.31389	1	10202	10202		4.897	1.31	1	134040			23661	4698	15601	15757	32041	32041					0.08763454816494232
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.5693054199219	3	405.569253	1213.68593	-0.026392	-1.0704E-05	0.54912	0.00022271	0.52273	0.000212	405.5694205182097	49.508	0.62301	49.585	49.359	49.982	0.076607					40	22	3	0	0	0	0.31389	1	10031	10031		4.897	1.31	1	125680			23662	4698	15601	15757	32042	32042					0.08763454816494232
VYQAIQINI	9	Unmodified	_VYQAIQINI_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;IFT80|p.L695F|1|0.41|ENSG00000068885|chr3:160277322-160277322|G/A|missense_variant;ENST00000463240.1_1_3:159992387-159995209:-|nuORF;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7650146484375	2	531.303124	1060.5917	-0.0042253	-2.2449E-06	0.77957	0.00041419	0.77534	0.00041194	531.3037523914952	72.376	0.32677	72.376	72.202	72.528	0					14	10	2	0	0	0	0.25281	1	17105	17105		6.7232	0	1	80069			23663	7459	15602	15758	32043	32043					0.06382315994369492
VYQASVGFVCE	11	Unmodified	_VYQASVGFVCE_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2814331054688	2	601.281531	1200.54851	0.66938	0.00040249	-1.507	-0.00090614	-0.83763	-0.00050365	601.280552825855	97.687	0.45599	97.727	97.526	97.982	0.040855					56	22	3	0	0	0	0.27921	2	24701	24660;24701		20.415	1.0526	1	229900			23664	1590	15603	15759	32044;32045	32045					-0.04374241845198412
VYQAVQALY	9	Unmodified	_VYQAVQALY_					0	0	0		TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2793579101562	2	527.782025	1053.5495	0.17693	9.3381E-05	-3.6658	-0.0019347	-3.4888	-0.0018413	527.7826207995663	60.329	0.72757	60.402	60.066	60.794	0.073421					50	25	4	0	0	0	0.1182	1	13358	13358		28.487	3.0875	1	188030			23665	664	15604	15760	32046	32046					0.024863405860060084
VYQEEKEAR	9	Unmodified	_VYQEEKEAR_					0	0	0			REV__nc|ENSG00000151914|Q03001-13|DST	REV__nc|ENSG00000151914|Q03001-13|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.7740478515625	2	576.288202	1150.56185	0.19791	0.00011405	2.8433	0.0016386	3.0412	0.0017526	576.289721479325	59.467	0.81897	59.467	59.17	59.989	0					46	26	2	0	0	0	0.19398	1	13181	13181		19.257	2.1441	1	285570	+		23666	12297	15605	15761	32047	32047					-0.0074066774163839
VYQHGLTGF	9	Unmodified	_VYQHGLTGF_					0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2586975097656	2	511.258717	1020.50288	-0.2066	-0.00010563	-0.006064	-3.1003E-06	-0.21266	-0.00010873	511.2586146684294	45.498	0.57037	45.498	45.238	45.808	0					41	19	3	0	0	0	0.028398	1	8979	8979		52.268	22.044	1	123520			23667	501	15606	15762	32048	32048					-0.006550992452844184
VYQHGLTGF	9	Unmodified	_VYQHGLTGF_					0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.25848388671875	2	511.258717	1020.50288	0.050465	2.58E-05	-0.18315	-9.3635E-05	-0.13268	-6.7835E-05	511.258509344404	45.383	0.57031	45.47	45.265	45.836	0.08754					43	22	3	0	0	0	0.028398	1	8800	8800		52.268	29.12	1	107480			23668	501	15606	15762	32049	32049					-0.006550992452844184
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8302001953125	2	588.82984	1175.64513	0.079915	4.7057E-05	-0.36303	-0.00021376	-0.28312	-0.00016671	588.8297663562463	45.889	0.50746	45.889	45.729	46.237	0					39	17	3	0	0	0	0.062017	1	9069	9069		40.725	21.363	1	92398			23669	5656	15607	15763	32050	32050					0.0643311349688247
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	588.82984	1175.64513	0.29122	0.00017148	0.11817	6.9581E-05	0.40938	0.00024106	588.8301186563673	45.75	0.54582	45.836	45.67	46.215	0.085617	-0.026523	0.00039432	NaN	40.725	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98185			23670	5656	15607	15763							0.0643311349688247
VYQIFDTFF	9	Unmodified	_VYQIFDTFF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2898559570312	2	590.289682	1178.56481	0.68212	0.00040265	-0.21944	-0.00012953	0.46268	0.00027312	590.2895210212741	97.735	0.98735	97.735	97.461	98.448	0					148	50	4	0	0	0	0.0005281	6	24846	24801;24846;24886;24932;24974;25019		131.27	91.31	1	1957900			23671	2499	15608	15764	32051;32052;32053;32054;32055;32056	32052					-0.01732792616826373
VYQIFDTFF	9	Unmodified	_VYQIFDTFF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.3195190429688	2	590.289682	1178.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.828	1	98.828	98.328	99.328	0								0	0	0	0.26517	1	25190	25190		6.2058	0.97511	1				23672	2499	15608	15764	32057	32057					-0.01732792616826373
VYQIFDTFF	9	Unmodified	_VYQIFDTFF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2899780273438	2	590.289682	1178.56481	0.70996	0.00041908	-0.22971	-0.0001356	0.48025	0.00028349	590.2894881287007	97.694	0.89614	97.735	97.489	98.385	0.040855					141	46	4	0	0	0	1.1935E-05	5	24681	24644;24681;24724;24765;24815		147.06	107.1	1	2047500			23673	2499	15608	15764	32058;32059;32060;32061;32062	32059					-0.01732792616826373
VYQIFDTFF	9	Unmodified	_VYQIFDTFF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3186645507812	2	590.289682	1178.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.818	1	98.86	98.36	99.36	0.041931								0	0	0	0.24978	1	25032	25032		9.3831	2.2814	1				23674	2499	15608	15764	32063	32063					-0.01732792616826373
VYQKAAMRS	9	Unmodified	_VYQKAAMRS_					0	0	0		ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2792358398438	2	527.279126	1052.5437	0.46669	0.00024608	0.67224	0.00035446	1.1389	0.00060053	527.2810442543963	60.351	0.93262	60.351	60.069	61.002	0					98	33	5	0	0	0	0.19398	1	13518	13518		19.257	3.4888	1	394730			23675	1749	15609	15765	32064	32064					0.019529188026808697
VYQKLSIQL	9	Unmodified	_VYQKLSIQL_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6;SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.3267211914062	2	546.326599	1090.63865	0.19366	0.0001058	0.094438	5.1594E-05	0.2881	0.0001574	546.3263519854426	56.727	0.46049	56.727	56.539	57	0					30	16	3	0	0	0	0.024248	1	12382	12382		55.235	23.966	1	195910			23676	1773	15610	15766	32065	32065					0.09695175545539314
VYQKYEPIF	9	Unmodified	_VYQKYEPIF_					0	0	0		ENST00000475908.5_1_5:56205193-56212726:+|nuORF;nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.2692260742188	2	593.810782	1185.60701	0.50506	0.00029991	-0.33962	-0.00020167	0.16544	9.824E-05	593.8105778735182	70.426	0.59003	70.426	70.196	70.786	0					39	21	2	0	0	0	0.19376	1	16551	16551		25.399	9.2502	1	158950			23677	3590	15611	15767	32066	32066					0.02163182791559848
VYQKYEPIF	9	Unmodified	_VYQKYEPIF_					0	0	0		ENST00000475908.5_1_5:56205193-56212726:+|nuORF;nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2695922851562	2	593.810782	1185.60701	0.5013	0.00029768	0.076567	4.5466E-05	0.57787	0.00034315	593.8107140471785	70.452	0.72955	70.512	70.104	70.833	0.060562					41	29	2	0	0	0	0.20194	1	16410	16410		24.021	3.5669	1	132960			23678	3590	15611	15767	32067	32067					0.02163182791559848
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.3399047851562	2	607.340041	1212.66553	0.6534	0.00039684	-0.73556	-0.00044673	-0.082161	-4.99E-05	607.3396555900457	75.396	0.68555	75.396	75.174	75.86	0					108	30	5	0	0	0	6.8107E-09	2	18045	18045;18091		164.52	118.78	1	13181000			23679	733	15612	15768	32068;32069	32068					0.06770284156687012
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.3397827148438	2	607.340041	1212.66553	0.71531	0.00043443	-0.65439	-0.00039744	0.060915	3.6996E-05	607.3396754199971	75.355	0.7237	75.399	75.19	75.913	0.044037					110	34	5	0	0	0	6.8107E-09	3	17869	17869;17912;17958		164.52	124.28	1	13941000			23680	733	15612	15768	32070;32071;32072	32070					0.06770284156687012
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7529296875	2	607.340041	1212.66553	0.72715	0.00044163	-0.31915	-0.00019383	0.408	0.00024779	607.3396506328565	75.977	0.91683	76.016	75.908	76.825	0.039238					54	44	2	0	0	0	0.11557	1	18252	18252		41.84	41.84	1	1046900			23681	733	15612	15768	32073	32073					0.06770284156687012
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	607.340041	1212.66553	0.62252	0.00037808	-0.32933	-0.00020002	0.29319	0.00017807	607.3395954506993	75.925	0.129	75.925	75.86	75.989	0	-0.045608	-5.5108E-06	NaN	41.84	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1737500			23682	733	15612	15768							0.06770284156687012
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.29345703125	2	569.293622	1136.57269	-0.24607	-0.00014009	0.11712	6.6673E-05	-0.12895	-7.3412E-05	569.2935880230967	25.215	0.4822	25.215	25.08	25.562	0					74	38	3	0	0	0	0.26684	1	2922	2922		10.824	5.5933	1	54764			23683	1220	15613	15769	32074	32074					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2936401367188	2	569.293622	1136.57269	-0.075746	-4.3121E-05	0.12844	7.3123E-05	0.052699	3.0001E-05	569.2935700243764	25.081	0.32302	25.177	25.009	25.332	0.096073					71	29	3	0	0	0	0.14091	2	2753	2716;2753		25.399	16.806	1	63069			23684	1220	15613	15769	32075;32076	32076					0.009867794233286986
VYQPGSVLDFP	11	Unmodified	_VYQPGSVLDFP_					0	0	0		ENSG00000204590|ENST00000376621|GNL1	ENSG00000204590|ENST00000376621|GNL1	ENSG00000204590|ENST00000376621|GNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.3101806640625	2	611.311146	1220.60774	0.17173	0.00010498	0.18358	0.00011222	0.35531	0.0002172	611.3110581031154	56.195	0.79996	56.195	55.948	56.748	0					68	29	3	0	0	0	0.38057	1	12308	12308		8.7454	0.83525	1	524890			23685	5481	15614	15770	32077	32077					0.006259774406089491
VYQSLANLI	9	Unmodified	_VYQSLANLI_					0	0	0		ENST00000481260.1_1_9:134504569-134518759:-|nuORF;RAPGEF1|p.K269Sfs*38|1|0.3|ENSG00000107263|chr9:131629140-131629140|G/-|frameshift_variant;nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1	ENST00000481260.1_1_9:134504569-134518759:-|nuORF	ENST00000481260.1_1_9:134504569-134518759:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.26373291015625	2	510.78985	1019.56515	0.39258	0.00020053	-0.079378	-4.0545E-05	0.31321	0.00015998	510.78991130599616	77.05	0.12712	77.085	76.991	77.118	0.034485					7	4	2	0	0	0	0.22247	1	18415	18415		20.415	7.883	1	53628			23686	1551	15615	15771	32078	32078					0.056146271030456774
VYQVLIQFL	9	Unmodified	_VYQVLIQFL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.8314819335938	2	561.831517	1121.64848	0.32457	0.00018235	-0.17157	-9.6393E-05	0.153	8.5961E-05	561.8313258413881	95.127	0.60046	95.127	94.866	95.467	0					62	25	3	0	0	0	0.10833	3	24006	24006;24061;24133		30.637	10.183	1	248140			23687	3484	15616	15772	32079;32080;32081	32079					0.09252363550899645
VYQVLIQFL	9	Unmodified	_VYQVLIQFL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8319702148438	2	561.831517	1121.64848	0.30497	0.00017134	-0.10151	-5.7033E-05	0.20346	0.00011431	561.8312450310972	94.984	0.58633	95.023	94.863	95.45	0.038872					55	24	3	0	0	0	0.083124	1	23849	23849		36.127	15.673	1	227650			23688	3484	15616	15772	32082	32082					0.09252363550899645
VYQVLQEHL	9	Unmodified	_VYQVLQEHL_					0	0	0		ENSG00000101144|ENST00000395863|BMP7	ENSG00000101144|ENST00000395863|BMP7	ENSG00000101144|ENST00000395863|BMP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.2899169921875	2	564.806031	1127.59751	0.36361	0.00020537	-0.077859	-4.3975E-05	0.28575	0.00016139	565.3075432775722	53.658	0.26878	53.658	53.544	53.813	0					12	9	2	0	0	0	0.17428	1	11442	11442		21.537	9.2963	1	47846			23689	1236	15617	15773	32083	32083					0.038814145060541705
VYQVLQEHL	9	Unmodified	_VYQVLQEHL_					0	0	0		ENSG00000101144|ENST00000395863|BMP7	ENSG00000101144|ENST00000395863|BMP7	ENSG00000101144|ENST00000395863|BMP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2899169921875	2	564.806031	1127.59751	0.43565	0.00024606	-0.21354	-0.00012061	0.22211	0.00012545	564.805790419726	53.683	0.2971	53.749	53.597	53.894	0.06543					18	12	2	0	0	0	0.13341	1	11284	11284		26.268	14.027	1	70385			23690	1236	15617	15773	32084	32084					0.038814145060541705
VYQWLSLVI	9	Unmodified	_VYQWLSLVI_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2990112304688	2	560.823692	1119.63283	0.429	0.00024059	-0.070548	-3.9565E-05	0.35845	0.00020103	560.8233744539732	101.06	0.40175	101.06	100.87	101.27	0					28	21	2	0	0	0	0.22912	1	25861	25861		18.146	9.4009	1	66822			23691	2012	15618	15774	32085	32085					0.07780077033839916
VYQWLSLVI	9	Unmodified	_VYQWLSLVI_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2991943359375	2	560.823692	1119.63283	0.57827	0.00032431	-0.3433	-0.00019253	0.23497	0.00013177	560.823110802561	100.97	0.31279	101.02	100.87	101.18	0.042839					25	20	2	0	0	0	0.24929	1	25684	25684		9.3831	2.66	1	103020			23692	2012	15618	15774	32086	32086					0.07780077033839916
VYQWMVYDG	9	Unmodified	_VYQWMVYDG_					0	0	0		ENST00000483599.5_1_9:131598322-131607768:-|nuORF;nc|ENSG00000286112|Q16773-3|KYAT1;ENST00000462722.5_1_9:131598322-131644289:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1	ENST00000483599.5_1_9:131598322-131607768:-|nuORF	ENST00000483599.5_1_9:131598322-131607768:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7576293945312	2	580.757692	1159.50083	0.38318	0.00022254	-1.4088	-0.00081819	-1.0257	-0.00059566	580.7572509560789	38.448	2.8388	38.448	37.897	40.736	0					283	102	6	0	0	0	0.3354	1	7306	7306		2.0598	0.21551	1	3114100			23693	4425	15619	15775	32087	32087					-0.072538960454267
VYRCRKLF	8	Unmodified	_VYRCRKLF_					0	0	0		ENST00000489033.5_1_X:110924556-110931204:+|nuORF	ENST00000489033.5_1_X:110924556-110931204:+|nuORF	ENST00000489033.5_1_X:110924556-110931204:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.266845703125	2	542.807854	1083.60115	0.54823	0.00029758	3.7534	0.0020374	4.3016	0.002335	542.8101394887639	64.138	0.95728	64.138	63.793	64.75	0					80	33	4	0	0	0	0.35759	1	14797	14797		10.183	2.8942	1	388790			23694	6796	15620	15776	32088	32088					0.06269805798888228
VYRCRKLF	8	Unmodified	_VYRCRKLF_					0	0	0		ENST00000489033.5_1_X:110924556-110931204:+|nuORF	ENST00000489033.5_1_X:110924556-110931204:+|nuORF	ENST00000489033.5_1_X:110924556-110931204:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.807854	1083.60115	0.50337	0.00027323	5.3331	0.0028949	5.8365	0.0031681	542.8112179384883	64.048	0.72036	64.119	63.914	64.634	0.071022	-0.0096884	0.00021138	NaN	15.768	67	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462690			23695	6796	15620	15776							0.06269805798888228
VYRDISMSL	9	Unmodified	_VYRDISMSL_					0	0	0			REV__ENSG00000278870|ENST00000623849|OR51G1	REV__ENSG00000278870|ENST00000623849|OR51G1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2783203125	2	542.278792	1082.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.843	1	58.914	58.414	59.414	0.070477								0	0	0	0.14533	1	12869	12869		26.268	7.0112	1		+		23696	11148	15621	15777	32089	32089					0.005060793629809268
VYRGDLSPGS	10	Unmodified	_VYRGDLSPGS_					0	0	0		nc|ENSG00000131067|Q9UJ14-6|GGT7	nc|ENSG00000131067|Q9UJ14-6|GGT7	nc|ENSG00000131067|Q9UJ14-6|GGT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7635498046875	2	525.764363	1049.51417	0.11179	5.8776E-05	-1.4402	-0.00075719	-1.3284	-0.00069842	525.7635098599752	35.831	0.48742	35.831	35.617	36.105	0					38	18	3	0	0	0	0.45627	1	6042	6042		3.5965	0.31518	1	114050			23697	7500	15622	15778	32090	32090					-0.008603219418091612
VYRKRRAN	8	Unmodified	_VYRKRRAN_					0	0	0		CD93|p.K612N|1|0.26|ENSG00000125810|chr20:23084357-23084357|C/G|missense_variant	CD93|p.K612N|1|0.26|ENSG00000125810|chr20:23084357-23084357|C/G|missense_variant	CD93|p.K612N|1|0.26|ENSG00000125810|chr20:23084357-23084357|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8172607421875	2	531.817599	1061.62064	0.54807	0.00029147	-1.069	-0.0005685	-0.5209	-0.00027703	531.8169209672808	81.584	0.71534	81.606	81.329	82.044	0.021866					47	25	2	0	0	0	0.53345	1	19823	19823		5.7604	5.7604	1	285320			23698	116	15623	15779	32091	32091					0.09229898134049108
VYRNYAML	8	Unmodified	_VYRNYAML_					0	0	0			REV__OR8J1|p.D121N|1|0.11|ENSG00000172487|chr11:56360607-56360607|G/A|missense_variant	REV__OR8J1|p.D121N|1|0.11|ENSG00000172487|chr11:56360607-56360607|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.2547607421875	2	515.262945	1028.51134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.626	1	68.688	68.188	69.188	0.062126								0	0	0	0.38822	1	15835	15835		10.183	0.83596	1		+		23699	12947	15624	15780	32092	32092					-0.0017786860032629193
VYRNYAML	8	Unmodified	_VYRNYAML_					0	0	0			REV__OR8J1|p.D121N|1|0.11|ENSG00000172487|chr11:56360607-56360607|G/A|missense_variant	REV__OR8J1|p.D121N|1|0.11|ENSG00000172487|chr11:56360607-56360607|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.7293701171875	2	515.262945	1028.51134	0.31417	0.00016188	1.1272	0.0005808	1.4414	0.00074268	515.7652040703666	37.065	0.78152	37.15	36.873	37.654	0.084404					45	28	3	0	0	0	0.3576	1	6272	6272		6.3541	1.1234	1	31498	+		23700	12947	15624	15780	32093	32093					-0.0017786860032629193
VYRVYVATF	9	Unmodified	_VYRVYVATF_					0	0	0		ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3060913085938	2	559.305667	1116.59678	-0.014865	-8.3138E-06	0.32598	0.00018232	0.31112	0.00017401	559.3058222634508	58.644	0.56465	58.644	58.473	59.038	0					44	19	3	0	0	0	0.0043658	2	12942	12942;13004		96.111	46.178	1	439490			23701	5281	15625	15781	32094;32095	32094					0.04314619856972968
VYRVYVATF	9	Unmodified	_VYRVYVATF_					0	0	0		ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.3059692382812	2	559.305667	1116.59678	0.35562	0.0001989	0.065588	3.6684E-05	0.42121	0.00023558	559.3057781707165	58.551	0.60443	58.621	58.415	59.02	0.070477					44	20	3	0	0	0	0.0040275	3	12788	12763;12788;12836		103.35	47.176	1	460850			23702	5281	15625	15781	32096;32097;32098	32097					0.04314619856972968
VYRVYVTTF	9	Unmodified	_VYRVYVTTF_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3112182617188	2	574.310949	1146.60735	0.4657	0.00026746	-0.062105	-3.5667E-05	0.4036	0.00023179	574.3106006003891	57.62	0.64717	57.62	57.434	58.081	0					45	22	3	0	0	0	0.010235	1	12647	12647		66.457	51.618	1	272820			23703	5336	15626	15782	32099	32099					0.03990602511407815
VYRVYVTTF	9	Unmodified	_VYRVYVTTF_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.311279296875	2	574.310949	1146.60735	0.34626	0.00019886	0.43249	0.00024838	0.77875	0.00044724	574.3110385857905	57.573	0.43148	57.641	57.437	57.869	0.068375					35	15	3	0	0	0	0.017478	1	12494	12494		60.074	40.817	1	219640			23704	5336	15626	15782	32100	32100					0.03990602511407815
VYRYESAIW	9	Unmodified	_VYRYESAIW_					0	0	0		ENSG00000138400|ENST00000374412|MDH1B;nc|ENSG00000138400|Q5I0G3-2|MDH1B	ENSG00000138400|ENST00000374412|MDH1B	ENSG00000138400|ENST00000374412|MDH1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.7991333007812	2	593.798206	1185.58186	0.38452	0.00022832	1.2226	0.00072597	1.6071	0.00095429	593.7981409259212	64.551	0.73227	64.62	64.455	65.188	0.068916					75	27	4	0	0	0	0.23216	1	14654	14654		14.838	2.5976	1	451940			23705	2910	15627	15783	32101	32101					-0.003508720110176
VYSAAILEYL	10	Unmodified	_VYSAAILEYL_					0	0	0		ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.310546875	2	571.310615	1140.60668	0.23116	0.00013206	0.17423	9.9538E-05	0.40538	0.0002316	571.3105803180013	89.179	0.62578	89.212	88.977	89.603	0.032257					74	23	4	0	0	0	0.14584	1	22111	22111		39.95	5.0176	1	1724900			23706	6918	15628	15784	32102	32102					0.041997630717105494
VYSAAILEYL	10	Unmodified	_VYSAAILEYL_					0	0	0		ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	571.310615	1140.60668	0.19851	0.00011341	0.14309	8.1747E-05	0.3416	0.00019516	571.3106175871657	89.22	0.74078	89.22	88.956	89.697	0	0.0041975	-1.1742E-05	NaN	39.95	78	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	955840			23707	6918	15628	15784							0.041997630717105494
VYSAGVYRL	9	Unmodified	_VYSAGVYRL_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2819213867188	2	514.282192	1026.54983	0.27577	0.00014182	0.046055	2.3685E-05	0.32182	0.00016551	514.2822367349429	48.354	0.61119	48.354	48.159	48.77	0					44	20	3	0	0	0	0.0043658	1	9801	9801		96.111	70.712	1	323000			23708	4657	15629	15785	32103	32103					0.037617603058379245
VYSAGVYRL	9	Unmodified	_VYSAGVYRL_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.282470703125	2	514.282192	1026.54983	0.38573	0.00019837	0.03044	1.5655E-05	0.41617	0.00021403	514.2822342000544	48.271	0.45175	48.351	48.155	48.607	0.080032					37	14	3	0	0	0	0.0045417	1	9643	9643		89.401	60.319	1	288880			23709	4657	15629	15785	32104	32104					0.037617603058379245
VYSCMRDF	8	Unmodified	_VYSCMRDF_					0	0	0		ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENST00000561210.1_1_15:54556427-54709226:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7174072265625	2	510.717513	1019.42047	-0.32188	-0.00016439	-0.46792	-0.00023898	-0.7898	-0.00040337	510.71720888497	40.713	0.43227	40.713	40.505	40.938	0					32	14	3	0	0	0	0.50159	1	7540	7540		12.532	2.4576	1	73102			23710	7152	15630	15786	32105	32105					-0.08846080640103082
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.274658203125	2	589.274229	1176.53391	0.50085	0.00029514	0.40295	0.00023745	0.9038	0.00053258	589.2742928403754	68.038	1.1703	68.038	67.812	68.983	0					100	43	4	0	0	0	1.4492E-07	3	15825	15825;15869;15878		152.41	114.24	1	1689800			23711	5038	15631	15787	32106;32107;32108	32106					-0.04729990721716604
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.274658203125	2	589.274229	1176.53391	0.70952	0.0004181	0.23912	0.00014091	0.94864	0.00055901	589.2742237868001	67.949	1.1018	68.012	67.845	68.946	0.063507					95	41	4	0	0	0	2.757E-07	3	15661	15622;15661;15774		147.06	108.88	1	1943900			23712	5038	15631	15787	32109;32110;32111	32110					-0.04729990721716604
VYSFGFERL	9	Unmodified	_VYSFGFERL_					0	0	0		nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.2879028320312	2	559.287474	1116.5604	0.69233	0.00038721	-0.11955	-6.6862E-05	0.57278	0.00032035	559.2873091660794	65.013	1.5229	65.013	64.356	65.879	0					141	55	4	0	0	0	0.0034159	8	14865	14846;14865;14874;14917;14971;14980;15026;15079		107.1	74.794	1	2566900			23713	3503	15632	15788	32112;32113;32114;32115;32116;32117;32118;32119	32113					0.006777429603062046
VYSFGFERL	9	Unmodified	_VYSFGFERL_					0	0	0		nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2877197265625	2	559.287474	1116.5604	0.61317	0.00034294	0.034709	1.9413E-05	0.64788	0.00036235	559.2874006502018	64.97	1.3819	65.039	64.536	65.918	0.068916					138	45	4	0	0	0	0.0034159	6	14720	14720;14763;14814;14861;14906;14948		107.1	68.924	1	2230400			23714	3503	15632	15788	32120;32121;32122;32123;32124;32125	32120					0.006777429603062046
VYSFVTPTF	9	Unmodified	_VYSFVTPTF_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7710571289062	2	530.771126	1059.5277	0.43931	0.00023317	0.56657	0.00030072	1.0059	0.00053389	530.7712454720535	79.283	0.57347	79.283	79.047	79.621	0					33	19	3	0	0	0	0.22344	1	19246	19246		15.847	0	1	139850			23715	2501	15633	15789	32126	32126					0.00031535837410956447
VYSFVTPTF	9	Unmodified	_VYSFVTPTF_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7714233398438	2	530.771126	1059.5277	0.3072	0.00016305	0.26838	0.00014245	0.57558	0.0003055	530.771180097754	79.296	0.44788	79.322	79.071	79.519	0.026436					35	15	3	0	0	0	0.23216	1	19073	19073		14.838	7.549	1	194990			23716	2501	15633	15789	32127	32127					0.00031535837410956447
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.81884765625	2	543.818941	1085.62333	0.14553	7.9143E-05	-0.052354	-2.8471E-05	0.093178	5.0672E-05	543.8187859860848	35.541	0.65772	35.541	35.389	36.047	0					49	24	3	0	0	0	0.07372	2	5956	5956;6012		38.176	24.27	1	108980			23717	2712	15634	15790	32128;32129	32128					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.8189086914062	2	543.818941	1085.62333	0.19496	0.00010603	0.10766	5.8547E-05	0.30262	0.00016457	543.8188824492773	35.472	0.49362	35.551	35.382	35.876	0.078827					39	17	3	0	0	0	0.12214	1	5791	5791		27.629	17.555	1	96753			23718	2712	15634	15790	32130	32130					0.08394308748324875
VYSIINGIVF	10	Unmodified	_VYSIINGIVF_					0	0	0		ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3	ENSG00000163812|ENST00000424952|ZDHHC3	ENSG00000163812|ENST00000424952|ZDHHC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8213500976562	2	562.82115	1123.62775	0.43231	0.00024331	0.053718	3.0233E-05	0.48602	0.00027355	562.8210096305249	91.469	0.57119	91.469	91.269	91.84	0					46	21	3	0	0	0	5.0348E-05	1	22961	22961		110.67	51.996	1	448560			23719	3949	15635	15791	32131	32131					0.07087773171247136
VYSIINGIVF	10	Unmodified	_VYSIINGIVF_					0	0	0		ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3	ENSG00000163812|ENST00000424952|ZDHHC3	ENSG00000163812|ENST00000424952|ZDHHC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.8212280273438	2	562.82115	1123.62775	0.29585	0.00016651	0.029202	1.6435E-05	0.32505	0.00018294	562.8210431390016	91.457	0.6021	91.493	91.284	91.886	0.035446					44	21	3	0	0	0	0.0010827	1	22798	22798		88.954	45.096	1	364270			23720	3949	15635	15791	32132	32132					0.07087773171247136
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.30010986328125	2	511.30005	1020.58555	0.72849	0.00037248	-0.47792	-0.00024436	0.25057	0.00012812	511.2997422736473	81.762	1.2335	81.762	81.489	82.723	0					119	43	4	0	0	0	1.0594E-10	3	19983	19983;20027;20072		176.84	42.542	1	3947100			23721	2757	15636	15792	32133;32134;32135	32133					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.30023193359375	2	511.30005	1020.58555	0.40099	0.00020502	-0.2256	-0.00011535	0.17539	8.9676E-05	511.29992879954546	81.774	1.1259	81.796	81.523	82.648	0.021866					122	40	5	0	0	0	7.6155E-09	3	19853	19810;19853;19906		163.04	40.857	1	5747400			23722	2757	15636	15792	32136;32137;32138	32137					0.07607797762852897
VYSKDNPNLL	10	Unmodified	_VYSKDNPNLL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.8084716796875	2	581.808771	1161.60299	0.47337	0.00027541	-0.44516	-0.000259	0.028217	1.6417E-05	581.8083795123498	69.365	0.47365	69.427	69.279	69.752	0.062126					29	16	2	0	0	0	0.40359	1	16056	16056		11.495	0	1	353730			23723	4573	15637	15793	32139	32139					0.028650932978507626
VYSKDQLQTF	10	Unmodified	_VYSKDQLQTF_					0	0	0		ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B	ENST00000418944.1_1_2:110941632-110941998:+|nuORF	ENST00000418944.1_1_2:110941632-110941998:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.8132934570312	2	614.814053	1227.61355	-0.56225	-0.00034568	1.1026	0.00067788	0.54033	0.0003322	614.8142547411402	44.583	0.3001	44.583	44.531	44.831	0					18	10	2	0	0	0	0.45133	1	8729	8729		4.5289	0.58447	1	52250			23724	1872	15638	15794	32140	32140					0.008850759522829321
VYSKDQLQTF	10	Unmodified	_VYSKDQLQTF_					0	0	0		ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B	ENST00000418944.1_1_2:110941632-110941998:+|nuORF	ENST00000418944.1_1_2:110941632-110941998:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.814053	1227.61355	-0.29617	-0.00018209	1.1822	0.00072682	0.886	0.00054473	614.8143458598104	44.628	0.39561	44.715	44.51	44.906	0.08754	0.066115	5.9964E-05	NaN	4.5289	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60349			23725	1872	15638	15794							0.008850759522829321
VYSKTQQSF	9	Unmodified	_VYSKTQQSF_					0	0	0		ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	ENST00000484819.1_1_1:154238957-154241481:+|nuORF	ENST00000484819.1_1_1:154238957-154241481:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2738037109375	2	544.274564	1086.53457	-0.079702	-4.338E-05	-0.062555	-3.4047E-05	-0.14226	-7.7427E-05	544.2741087717571	28.564	0.30114	28.646	28.532	28.833	0.082134					27	15	2	0	0	0	0.27929	1	3733	3733		9.3831	0	1	30363			23726	3170	15639	15795	32141	32141					-0.005231512820046191
VYSKTQQSF	9	Unmodified	_VYSKTQQSF_					0	0	0		ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	ENST00000484819.1_1_1:154238957-154241481:+|nuORF	ENST00000484819.1_1_1:154238957-154241481:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	544.274564	1086.53457	-0.12223	-6.6525E-05	-0.36736	-0.00019995	-0.48959	-0.00026647	544.2740657867175	28.635	0.43805	28.635	28.443	28.881	0	-0.0056831	-8.9244E-05	NaN	9.3831	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30914			23727	3170	15639	15795							-0.005231512820046191
VYSLFYII	8	Unmodified	_VYSLFYII_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.3061218261719	2	509.286411	1016.55827	0.3861	0.00019664	-0.17604	-8.9656E-05	0.21006	0.00010698	509.28608401342115	87.62	0.40018	87.62	87.455	87.855	0					31	14	3	0	0	0	0.34775	1	21768	21768		14.582	0	1	158600	+		23728	8592	15640	15796	32142	32142					0.05065314222474626
VYSLFYII	8	Unmodified	_VYSLFYII_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.3060607910156	2	509.286411	1016.55827	0.2254	0.00011479	-0.14422	-7.3451E-05	0.081175	4.1341E-05	509.286184507397	87.603	0.39291	87.633	87.458	87.851	0.030037					23	14	3	0	0	0	0.34292	1	21633	21633		24.674	0	1	221920	+		23729	8592	15640	15796	32143	32143					0.05065314222474626
VYSLLLVVF	9	Unmodified	_VYSLLLVVF_					0	0	0			REV__ENSG00000181927|ENST00000641760|OR4P4	REV__ENSG00000181927|ENST00000641760|OR4P4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.8220825195312	2	526.823161	1051.63177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.33	1	103.33	102.83	103.83	0								0	0	0	0.23452	1	26556	26556		12.532	7.7755	1		+		23730	10431	15641	15797	32144	32144					0.10801862664948203
VYSLQQFGF	9	Unmodified	_VYSLQQFGF_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7744750976562	2	544.7742	1087.53385	0.61766	0.00033648	0.33553	0.00018279	0.95319	0.00051927	544.774241322011	82.193	1.0902	82.193	81.81	82.9	0					109	38	4	0	0	0	1.4799E-05	2	20106	20106;20158		144.35	96.004	1	869580			23731	575	15642	15798	32145;32146	32145					-0.00641945931056398
VYSLQQFGF	9	Unmodified	_VYSLQQFGF_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7744750976562	2	544.7742	1087.53385	0.34427	0.00018755	0.56768	0.00030926	0.91195	0.0004968	544.774328359245	82.18	1.1709	82.201	81.846	83.017	0.021866					96	41	4	0	0	0	0.00034446	1	19962	19962		134.3	85.95	1	949200			23732	575	15642	15798	32147	32147					-0.00641945931056398
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2692260742188	2	544.268947	1086.52334	0.56627	0.0003082	0.21535	0.00011721	0.78162	0.00042541	544.2688851595057	64.55	0.86909	64.55	64.296	65.165	0					98	31	5	0	0	0	0.00041987	2	14753	14753;14801		133.05	58.123	1	1243000			23733	4986	15643	15799	32148;32149	32148					-0.01645973376139409
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2692260742188	2	544.268947	1086.52334	0.47398	0.00025797	0.24078	0.00013105	0.71476	0.00038902	544.2688980418277	64.467	0.901	64.535	64.287	65.188	0.068909					102	33	5	0	0	0	0.0042616	1	14584	14584		100.09	28.957	1	1125200			23734	4986	15643	15799	32150	32150					-0.01645973376139409
VYSNSIYELL	10	Unmodified	_VYSNSIYELL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.8110961914062	2	600.810979	1199.6074	0.81012	0.00048673	-0.47316	-0.00028428	0.33696	0.00020245	600.8106663160665	81.829	0.65635	81.829	81.573	82.229	0					48	22	3	0	0	0	3.6899E-05	4	20039	19987;20039;20062;20082		121.35	71.413	1	1025200			23735	4986	15644	15800	32151;32152;32153;32154	32152					0.015585577207730239
VYSNSIYELL	10	Unmodified	_VYSNSIYELL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.81103515625	2	600.810979	1199.6074	0.46322	0.00027831	-0.080518	-4.8376E-05	0.3827	0.00022993	600.8108908511143	81.825	0.53877	81.847	81.594	82.133	0.021866					46	18	3	0	0	0	5.0202E-05	2	19830	19830;19879		110.79	72.819	1	1044800			23736	4986	15644	15800	32155;32156	32155					0.015585577207730239
VYSPFVLLNTL	11	Unmodified	_VYSPFVLLNTL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8616333007812	2	633.360639	1264.70673	0.19204	0.00012163	0.13496	8.5476E-05	0.327	0.00020711	633.3604304725471	101.77	0.44719	101.77	101.53	101.98	0					112	33	5	0	0	0	0.21273	2	26046	26046;26123		28.234	14.216	1	616780			23737	3316	15645	15801	32157;32158	32157					0.08496000405534687
VYSPFVLLNTL	11	Unmodified	_VYSPFVLLNTL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.3605346679688	2	633.360639	1264.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.02	1	102.06	101.56	102.56	0.042656								0	0	0	0.32331	1	25997	25997		6.6304	1.7334	1				23738	3316	15645	15801	32159	32159					0.08496000405534687
VYSPFVLLNTL	11	Unmodified	_VYSPFVLLNTL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.360595703125	2	633.360639	1264.70673	0.41981	0.00026589	-0.1287	-8.1512E-05	0.29111	0.00018438	633.3602685622718	101.71	0.50048	101.76	101.52	102.02	0.042656					132	42	5	0	0	0	0.13029	1	25918	25918		62.869	27.937	1	453950			23739	3316	15645	15801	32160	32160					0.08496000405534687
VYSPHVLNL	9	Unmodified	_VYSPHVLNL_					0	0	0		ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-2|DNM1;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-4|DNM3	ENSG00000106976|ENST00000372923|DNM1	ENSG00000106976|ENST00000372923|DNM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2899780273438	2	521.290017	1040.56548	0.29612	0.00015436	0.094088	4.9047E-05	0.39021	0.00020341	521.2899883199431	56.202	1.2616	56.202	55.866	57.127	0					103	46	4	0	0	0	1.1935E-05	2	12181	12181;12232		147.06	89.588	1	2929100			23740	1538	15646	15802	32161;32162	32161					0.0468204682290434
VYSPHVLNL	9	Unmodified	_VYSPHVLNL_					0	0	0		ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-2|DNM1;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-4|DNM3	ENSG00000106976|ENST00000372923|DNM1	ENSG00000106976|ENST00000372923|DNM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.2900390625	2	521.290017	1040.56548	0.15679	8.1735E-05	0.25965	0.00013536	0.41645	0.00021709	521.2900490830558	56.136	1.0728	56.202	55.897	56.97	0.066452					96	39	4	0	0	0	1.1935E-05	2	12066	12021;12066		147.06	97.126	1	2154000			23741	1538	15646	15802	32163;32164	32164					0.0468204682290434
VYSPLGSALA	10	Unmodified	_VYSPLGSALA_					0	0	0			REV__nc|ENSG00000133256|P35913-3|PDE6B	REV__nc|ENSG00000133256|P35913-3|PDE6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2687072753906	2	489.26875	976.522947	0.041112	2.0115E-05	-0.31855	-0.00015586	-0.27744	-0.00013574	489.26861214101774	39.14	0.51523	39.14	38.918	39.433	0					42	18	3	0	0	0	0.30541	1	7069	7069		19.257	0	1	124090	+		23742	9146	15647	15803	32165	32165					0.03374651694662134
VYSPLGSALA	10	Unmodified	_VYSPLGSALA_					0	0	0			REV__nc|ENSG00000133256|P35913-3|PDE6B	REV__nc|ENSG00000133256|P35913-3|PDE6B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.2687683105469	2	489.26875	976.522947	0.12855	6.2894E-05	-0.3152	-0.00015422	-0.18665	-9.1324E-05	489.2687340940246	39.051	0.47958	39.138	38.911	39.391	0.08688					33	18	2	0	0	0	0.31456	1	6921	6921		14.838	0	1	88967	+		23743	9146	15647	15803	32166	32166					0.03374651694662134
VYSQFFQSS	9	Unmodified	_VYSQFFQSS_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7533569335938	2	546.753464	1091.49238	-0.31463	-0.00017203	0.63341	0.00034632	0.31878	0.00017429	546.75386392154	41.373	0.55535	41.462	41.089	41.644	0.089764					39	21	3	0	0	0	0.3182	1	7558	7558		4.3292	0	1	95904	+		23744	10374	15648	15804	32167	32167					-0.04971126690384153
VYSQFITQL	9	Unmodified	_VYSQFITQL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant;ENST00000496204.1_1_5:131931266-131935763:+|nuORF	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7954711914062	2	549.795132	1097.57571	0.16047	8.8227E-05	0.66871	0.00036766	0.82919	0.00045588	549.7958929766492	73.582	0.74017	73.582	73.313	74.053	0					90	26	4	0	0	0	1.9628E-05	2	17478	17478;17561		139.78	54.14	1	2583500			23745	1805	15649	15805	32168;32169	32168					0.030826097574845335
VYSQFITQL	9	Unmodified	_VYSQFITQL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant;ENST00000496204.1_1_5:131931266-131935763:+|nuORF	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7953491210938	2	549.795132	1097.57571	0.39674	0.00021812	0.27638	0.00015195	0.67312	0.00037008	549.7956850468095	73.526	1.0215	73.578	73.239	74.261	0.052567					100	39	4	0	0	0	0.0016629	2	17292	17292;17337		117.84	32.196	1	1936200			23746	1805	15649	15805	32170;32171	32170					0.030826097574845335
VYSRNQGLF	9	Unmodified	_VYSRNQGLF_					0	0	0			REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674	REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7842407226562	2	542.282723	1082.55089	0.31475	0.00017069	0.11697	6.3432E-05	0.43173	0.00023412	542.2825905979983	46.847	0.87071	46.847	46.686	47.557	0					58	32	3	0	0	0	0.24021	1	9339	9339		13.906	0	1	373130	+		23747	11079	15650	15806	32172	32172					0.012919746747684258
VYSRTFTWL	9	Unmodified	_VYSRTFTWL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8087768554688	2	586.808574	1171.60259	0.76846	0.00045094	-0.33147	-0.00019451	0.43699	0.00025643	586.8082646163172	64.621	1.6078	64.621	64.328	65.936	0					153	58	4	0	0	0	0.00021732	3	14779	14779;14821;14903		136.39	90.693	1	3033300			23748	5326	15651	15807	32173;32174;32175	32173					0.02365718368673697
VYSRTFTWL	9	Unmodified	_VYSRTFTWL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.8087768554688	2	586.808574	1171.60259	0.78683	0.00046172	-0.35165	-0.00020635	0.43518	0.00025537	586.8082557723505	64.513	1.5997	64.582	64.374	65.973	0.068909					145	61	4	0	0	0	0.002259	2	14628	14628;14674		114.19	83.55	1	2914800			23749	5326	15651	15807	32176;32177	32176					0.02365718368673697
VYSTFGFSF	9	Unmodified	_VYSTFGFSF_					0	0	0		nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.747802734375	2	527.74765	1053.48075	0.44262	0.00023359	-0.10475	-5.5281E-05	0.33787	0.00017831	527.7475602658333	85.88	0.26149	85.905	85.773	86.035	0.025169					15	9	2	0	0	0	0.30005	1	21129	21129		6.7232	1.9672	1	99110			23750	5024	15652	15808	32178	32178					-0.04385323713722755
VYSTMLVFF	9	Oxidation (M)	_VYSTM(Oxidation (M))LVFF_		VYSTM(1)LVFF		VYSTM(44)LVFF	0	0	1		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7813110351562	2	561.780636	1121.54672	0.203	0.00011404	0.87929	0.00049397	1.0823	0.00060801	561.7810340712933	86.367	0.51385	86.367	86.125	86.639	0					35	18	2	0	0	0	0.045114	1	21421	21421		44.407	14.182	1	329040			23751	1419	15653	15809	32179	32179		88			-0.009192508631713281
VYSTMLVFF	9	Oxidation (M)	_VYSTM(Oxidation (M))LVFF_		VYSTM(1)LVFF		VYSTM(44)LVFF	0	0	1		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7810668945312	2	561.780636	1121.54672	0.40425	0.0002271	0.64281	0.00036112	1.0471	0.00058821	561.7808672879767	86.328	0.55322	86.353	86.117	86.67	0.025169					53	21	3	0	0	0	0.045114	2	21240	21240;21277		44.407	14.182	1	465780			23752	1419	15653	15809	32180;32181	32180		88			-0.009192508631713281
VYSTMLVFF	9	Oxidation (M)	_VYSTM(Oxidation (M))LVFF_		VYSTM(1)LVFF		VYSTM(54)LVFF	0	0	1		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.7808837890625	2	561.780636	1121.54672	0.42914	0.00024108	0.17396	9.7729E-05	0.6031	0.00033881	561.7806999611139	88.251	1.2618	88.281	87.906	89.168	0.030037					106	49	3	0	0	0	0.026569	1	21940	21940		53.576	23.351	1	394990			23753	1419	15653	15809	32182	32182		88			-0.009192508631713281
VYSVFGFSF	9	Unmodified	_VYSVFGFSF_					0	0	0		ENST00000509410.1_1_5:33461160-33466106:+|nuORF;ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENST00000509410.1_1_5:33461160-33466106:+|nuORF	ENST00000509410.1_1_5:33461160-33466106:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.299560546875	2	526.758018	1051.50148	0.46916	0.00024713	-0.16061	-8.4602E-05	0.30855	0.00016253	526.7578700743722	98.257	0.28584	98.299	98.145	98.431	0.041931					19	13	2	0	0	0	0.13166	1	24861	24861		37.974	16.227	1	44961			23754	1800	15654	15810	32183	32183					-0.022207333340247715
VYTDFAFRI	9	Unmodified	_VYTDFAFRI_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2954711914062	2	566.295299	1130.57605	0.4672	0.00026457	0.39879	0.00022583	0.86599	0.0004904	566.2954362045634	70.205	1.1215	70.205	69.791	70.912	0					112	41	4	0	0	0	0.00087611	3	16487	16440;16487;16533		125.53	60.294	1	1332500			23755	3824	15655	15811	32184;32185;32186	32185					0.015980294773271453
VYTDFAFRI	9	Unmodified	_VYTDFAFRI_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2958374023438	2	566.295299	1130.57605	0.40786	0.00023097	0.45128	0.00025556	0.85914	0.00048652	566.2955686133532	70.146	1.0841	70.206	69.78	70.864	0.060562					109	44	3	0	0	0	0.00087611	2	16309	16264;16309		125.53	60.294	1	1068500			23756	3824	15655	15811	32187;32188	32188					0.015980294773271453
VYTDILIGL	9	Unmodified	_VYTDILIGL_					0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7945861816406	2	503.794601	1005.57465	0.27841	0.00014026	0.1395	7.0278E-05	0.41791	0.00021054	503.79456998209815	88.739	0.63082	88.739	88.512	89.143	0					46	26	2	0	0	0	0.017037	2	22100	22100;22143		60.39	0	1	465870			23757	277	15656	15812	32189;32190	32189					0.07208395388579447
VYTDILIGL	9	Unmodified	_VYTDILIGL_					0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7947998046875	2	503.794601	1005.57465	0.29888	0.00015057	0.43342	0.00021835	0.7323	0.00036893	503.7946053103366	88.639	0.75969	88.671	88.49	89.25	0.032257					61	31	4	0	0	0	0.017037	2	21968	21919;21968		60.39	0	1	525810			23758	277	15656	15812	32191;32192	32192					0.07208395388579447
VYTDWIMAL	9	Oxidation (M)	_VYTDWIM(Oxidation (M))AL_		VYTDWIM(1)AL		VYTDWIM(85)AL	0	0	1		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2753295898438	2	564.275718	1126.53688	0.41521	0.00023429	-0.51161	-0.00028869	-0.096397	-5.4394E-05	564.2750879399916	87.593	1.031	87.593	87.455	88.486	0					74	37	3	0	0	0	0.0046476	1	21847	21847		85.357	58.473	1	584930			23759	4396	15657	15813	32193	32193		264			-0.02132438868557074
VYTDWIMAL	9	Oxidation (M)	_VYTDWIM(Oxidation (M))AL_		VYTDWIM(1)AL		VYTDWIM(71)AL	0	0	1		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7825317382812	2	564.275718	1126.53688	0.17888	0.00010094	-0.75583	-0.0004265	-0.57695	-0.00032556	564.2750345787003	86.283	0.50625	86.283	86.079	86.585	0					41	18	3	0	0	0	0.015182	1	21361	21361		71.134	38.828	1	267680			23760	4396	15657	15813	32194	32194		264			-0.02132438868557074
VYTDWIMAL	9	Oxidation (M)	_VYTDWIM(Oxidation (M))AL_					0	0	1		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	564.275718	1126.53688	0.22768	0.00012847	-0.77324	-0.00043632	-0.54556	-0.00030784	564.2747597264658	87.548	0.48466	87.578	87.201	87.686	0.030037	-0.007666	-0.00024642	NaN	85.357	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343190			23761	4396	15657	15813				264			-0.02132438868557074
VYTEYYQSF	9	Unmodified	_VYTEYYQSF_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.2650756835938	2	600.266404	1198.51826	0.43018	0.00025822	-1.027	-0.0006165	-0.59686	-0.00035827	600.2654105502386	68.036	0.4665	68.036	67.857	68.324	0					44	16	4	0	0	0	0.19398	1	15813	15813		19.257	4.4187	1	198270	+		23762	8161	15658	15814	32195	32195					-0.07306277238785697
VYTEYYQSF	9	Unmodified	_VYTEYYQSF_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.7673950195312	2	600.266404	1198.51826	0.55829	0.00033512	-1.2776	-0.0007669	-0.71931	-0.00043178	600.2654096422763	67.955	0.48473	68.018	67.874	68.359	0.063507					41	17	3	0	0	0	0.25281	1	15693	15693		6.7232	0	1	340140	+		23763	8161	15658	15814	32196	32196					-0.07306277238785697
VYTFGLGQF	9	Unmodified	_VYTFGLGQF_					0	0	0		nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-5|RPGR	nc|ENSG00000156313|Q92834-5|RPGR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7793579101562	2	516.263468	1030.51238	0.56902	0.00029377	-1.0423	-0.0005381	-0.47327	-0.00024433	516.2627432795706	82.576	0.47894	82.576	82.313	82.792	0					39	16	3	0	0	0	0.033885	2	20264	20230;20264		48.346	14.243	1	236180			23764	3619	15659	15815	32197;32198	32198					-0.0016533095977138146
VYTFGLGQF	9	Unmodified	_VYTFGLGQF_					0	0	0		nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-5|RPGR	nc|ENSG00000156313|Q92834-5|RPGR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.779052734375	2	516.263468	1030.51238	0.3421	0.00017661	-0.76143	-0.0003931	-0.41933	-0.00021649	516.2628598352242	82.551	0.61197	82.573	82.319	82.931	0.021744					46	21	3	0	0	0	0.021119	1	20109	20109		57.471	15.377	1	345130			23765	3619	15659	15815	32199	32199					-0.0016533095977138146
VYTFQFQDF	9	Unmodified	_VYTFQFQDF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7772216796875	2	597.776939	1193.53933	0.52488	0.00031376	0.31039	0.00018554	0.83527	0.00049931	597.7770380942773	82.323	1.0234	82.323	82.118	83.141	0					82	35	5	0	0	0	4.6221E-09	3	20151	20151;20200;20253		168.54	110.82	1	2192800			23766	1364	15660	15816	32200;32201;32202	32200					-0.049702671392424236
VYTFQFQDF	9	Unmodified	_VYTFQFQDF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7771606445312	2	597.776939	1193.53933	0.20181	0.00012064	0.61553	0.00036795	0.81734	0.00048859	597.7772303307379	82.342	0.77072	82.364	82.133	82.904	0.021751					80	27	5	0	0	0	1.8365E-14	4	20028	19983;20028;20075;20130		195.45	157.48	1	2085400			23767	1364	15660	15816	32203;32204;32205;32206	32204					-0.049702671392424236
VYTGFLDYF	9	Unmodified	_VYTGFLDYF_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7688598632812	2	562.768583	1123.52261	0.49275	0.00027731	-0.12908	-7.2645E-05	0.36367	0.00020466	562.7685268692505	92.153	0.55875	92.189	91.966	92.524	0.036522					30	19	2	0	0	0	0.15911	1	23012	23012		25.399	10.561	1	188290			23768	825	15661	15817	32207	32207					-0.034207680251938655
VYTGLFYKL	9	Unmodified	_VYTGLFYKL_					0	0	0		nc|ENSG00000170917|P53370-2|NUDT6;ENSG00000170917|ENST00000304430|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2385864257812	2	552.310418	1102.60628	0.86246	0.00047635	-0.42582	-0.00023518	0.43665	0.00024116	552.3100013314315	66.88	0.68257	66.945	66.725	67.408	0.065071					44	23	3	0	0	0	0.017949	1	15310	15310		71.922	41.286	1	237930			23769	4418	15662	15818	32208	32208					0.059083881425067375
VYTHLQIL	8	Unmodified	_VYTHLQIL_					0	0	0			REV__ENSG00000103148|ENST00000611875|NPRL3	REV__ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.78729248046875	2	493.78711	985.559667	0.34041	0.00016809	0.18145	8.96E-05	0.52186	0.00025769	493.7871264612164	58.013	0.63433	58.081	57.869	58.503	0.068375					50	23	3	0	0	0	0.53423	1	12641	12641		5.2307	0	1	720710	+		23770	8470	15663	15819	32209	32209					0.06630948311249085
VYTHNLYYL	9	Unmodified	_VYTHNLYYL_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2454833984375	2	593.300581	1184.58661	0.4281	0.00025399	-0.16608	-9.8538E-05	0.26202	0.00015546	593.3006348953919	55.777	0.77591	55.777	55.318	56.094	0					77	26	4	0	0	0	0.11557	1	12055	12055		41.84	9.5341	1	571430			23771	5436	15664	15820	32210	32210					0.001700121317526282
VYTILTVQL	9	Unmodified	_VYTILTVQL_					0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.3159790039062	2	525.3157	1048.61685	0.51288	0.00026942	-0.008672	-4.5555E-06	0.5042	0.00026487	525.3155866935559	85.375	0.64719	85.375	85.132	85.779	0					58	27	4	0	0	0	0.0040167	2	21069	21069;21122		103.42	30.593	1	1052100			23772	926	15665	15821	32211;32212	32211					0.09448370796917516
VYTILTVQL	9	Unmodified	_VYTILTVQL_					0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3154907226562	2	525.3157	1048.61685	0.54941	0.00028861	-0.081973	-4.3062E-05	0.46743	0.00024555	525.3155540694838	85.278	0.53689	85.301	85.156	85.693	0.023125					57	21	4	0	0	0	0.0040167	3	20900	20900;20945;20986		103.42	31.497	1	933640			23773	926	15665	15821	32213;32214;32215	32213					0.09448370796917516
VYTKLQEI	8	Unmodified	_VYTKLQEI_					0	0	0		ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7214050292969	2	497.2844	992.554247	0.071385	3.5499E-05	0.16719	8.3139E-05	0.23857	0.00011864	497.2844513738524	45.993	0.61145	45.993	45.808	46.42	0					54	20	3	0	0	0	0.3576	1	9159	9159		7.9102	0	1	320930			23774	5138	15666	15822	32216	32216					0.05767224728754172
VYTLDIPLL	9	Unmodified	_VYTLDIPLL_					0	0	0		ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.8108520507812	2	523.810251	1045.60595	0.26255	0.00013753	0.4444	0.00023278	0.70696	0.00037031	523.8104893244737	95.795	0.37366	95.795	95.654	96.028	0					31	19	2	0	0	0	0.1182	1	24273	24273		28.487	5.3384	1	114040			23775	2958	15667	15823	32217	32217					0.08496968422650752
VYTLDIPVL	9	Unmodified	_VYTLDIPVL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.8025512695312	2	516.802426	1031.5903	0.28258	0.00014604	0.69134	0.00035729	0.97392	0.00050332	516.8025218622952	90.17	0.6097	90.17	90.048	90.657	0					56	24	3	0	0	0	0.0037915	2	22549	22549;22595		104.8	60.392	1	642140			23776	3637	15668	15824	32218;32219	32218					0.07576681905607074
VYTLDIPVL	9	Unmodified	_VYTLDIPVL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.8026123046875	2	516.802426	1031.5903	0.076793	3.9687E-05	0.41243	0.00021314	0.48922	0.00025283	516.8025770529688	90.202	0.54422	90.236	90.035	90.58	0.034058					47	22	3	0	0	0	0.0045547	2	22420	22377;22420		88.904	44.497	1	557050			23777	3637	15668	15824	32220;32221	32221					0.07576681905607074
VYTLDIPVLF	10	Unmodified	_VYTLDIPVLF_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.3368530273438	2	590.336633	1178.65871	0.31208	0.00018423	0.029221	1.725E-05	0.3413	0.00020148	590.336554507499	103.15	0.51487	103.15	102.93	103.44	0					86	35	4	0	0	0	0.3198	3	26514	26470;26514;26552		20.454	10.38	1	332610			23778	3637	15669	15825	32222;32223;32224	32223					0.07652926485434364
VYTLDIPVLF	10	Unmodified	_VYTLDIPVLF_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3359375	2	590.336633	1178.65871	0.54317	0.00032065	-0.13383	-7.9003E-05	0.40935	0.00024165	590.336401171599	103.05	0.44781	103.1	102.92	103.37	0.040916					100	41	3	0	0	0	0.25965	3	26361	26285;26324;26361		26.884	12.045	1	289710			23779	3637	15669	15825	32225;32226;32227	32227					0.07652926485434364
VYTPTDTLVF	10	Unmodified	_VYTPTDTLVF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.301025390625	2	578.300247	1154.58594	0.34427	0.00019909	0.85816	0.00049627	1.2024	0.00069536	578.3005092699088	77.68	0.5094	77.68	77.504	78.013	0					45	17	4	0	0	0	0.28643	1	18824	18824		24.021	9.1823	1	675040			23780	4527	15670	15826	32228	32228					0.014831726920419896
VYTPTDTLVF	10	Unmodified	_VYTPTDTLVF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3005981445312	2	578.300247	1154.58594	0.53218	0.00030776	0.55618	0.00032164	1.0884	0.0006294	578.300478710238	77.66	0.62685	77.694	77.489	78.116	0.034485					43	20	3	0	0	0	0.016625	1	18603	18603		88.954	68.083	1	667130			23781	4527	15670	15826	32229	32229					0.014831726920419896
VYTQHQPFL	9	Unmodified	_VYTQHQPFL_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7930297851562	2	566.792924	1131.57129	0.21388	0.00012123	0.1182	6.6992E-05	0.33208	0.00018822	566.7927519507964	46.845	0.66242	46.845	46.686	47.349	0					44	25	3	0	0	0	0.017478	2	9350	9350;9401		60.074	36.925	1	153950			23782	7506	15671	15827	32230;32231	32230					0.01077145334556917
VYTQHQPFL	9	Unmodified	_VYTQHQPFL_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.79248046875	2	566.792924	1131.57129	0.19468	0.00011034	0.27598	0.00015642	0.47065	0.00026676	566.7929003975511	46.698	0.52795	46.781	46.65	47.178	0.083096					48	23	3	0	0	0	0.03472	2	9182	9182;9232		47.749	17.112	1	206440			23783	7506	15671	15827	32232;32233	32232					0.01077145334556917
VYTRIFFYV	9	Unmodified	_VYTRIFFYV_					0	0	0		LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant;ENSG00000064547|ENST00000407877|LPAR2	LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.270751953125	2	604.329142	1206.64373	0.40741	0.00024621	-0.29384	-0.00017758	0.11357	6.8633E-05	604.329012401571	73.946	0.35088	73.946	73.744	74.095	0					23	12	3	0	0	0	0.19376	1	17634	17634		19.257	6.7254	1	156060			23784	665	15672	15828	32234	32234					0.04867479408130748
VYTSAYLLV	9	Unmodified	_VYTSAYLLV_					0	0	0			REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1	REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7857666015625	2	514.786776	1027.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.684	1	88.716	88.216	89.216	0.032257								0	0	0	0.20792	1	21943	21943		16.942	0	1		+		23785	10728	15673	15829	32235	32235					0.04632108871487617
VYTSGIYNI	9	Unmodified	_VYTSGIYNI_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.8008422851562	2	515.266207	1028.51786	0.52201	0.00026897	0.86464	0.00044552	1.3866	0.00071449	515.2664836577013	63.087	0.58919	63.087	62.941	63.531	0					37	22	2	0	0	0	0.099539	1	14316	14316		45.7	13.394	1	348810			23786	880	15674	15830	32236	32236					0.004743478320506256
VYTSGIYNI	9	Unmodified	_VYTSGIYNI_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.800537109375	2	515.266207	1028.51786	0.43744	0.0002254	0.70671	0.00036414	1.1442	0.00058954	515.266582938453	62.995	0.50957	63.067	62.857	63.367	0.072701					38	22	2	0	0	0	0.16392	1	14130	14130		32.786	14.651	1	337660			23787	880	15674	15830	32237	32237					0.004743478320506256
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	519.7662963867188	2	519.766374	1037.5182	0.09442	4.9077E-05	-0.17027	-8.8502E-05	-0.075853	-3.9426E-05	519.7663323769417	46.389	0.35761	46.474	46.215	46.573	0.085617					33	16	3	0	0	0	0.004541	1	9095	9095		89.427	55.324	1	510000			23788	1690	15675	15831	32238	32238					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	519.766374	1037.5182	0.1526	7.9316E-05	-0.44323	-0.00023038	-0.29063	-0.00015106	519.7661129385868	46.478	0.37715	46.478	46.207	46.584	0	0.0015265	-0.00014552	NaN	89.427	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631300			23789	1690	15675	15831							0.0009376755190260155
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2954711914062	2	560.295299	1118.57605	0.281	0.00015744	0.1184	6.6339E-05	0.3994	0.00022378	560.2953043302168	59.399	1.3372	59.399	59.17	60.507	0					109	50	3	0	0	0	1.1297E-12	4	13193	13151;13193;13240;13282		179.23	121.76	1	2091200			23790	4573	15676	15832	32239;32240;32241;32242	32240					0.021500294773204587
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2953491210938	2	560.295299	1118.57605	0.31455	0.00017624	-0.064946	-3.6389E-05	0.24961	0.00013985	560.2951034944327	59.297	1.6324	59.369	58.971	60.603	0.072338					123	62	4	0	0	0	1.1297E-12	4	13023	12976;13023;13066;13120		179.23	121.76	1	2140400			23791	4573	15676	15832	32243;32244;32245;32246	32244					0.021500294773204587
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(130)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7574462890625	2	559.757358	1117.50016	0.73733	0.00041273	-0.37894	-0.00021211	0.35839	0.00020061	559.7570851414839	65.541	0.505	65.541	65.286	65.791	0					49	18	4	0	0	0	0.00052627	1	15071	15071		131.3	95.254	1	836300			23792	545	15677	15833	32247	32247		26			-0.053887354851212876
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(140)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.758056640625	2	559.757358	1117.50016	0.5199	0.00029102	0.38018	0.00021281	0.90008	0.00050383	559.7574763982518	68.473	1.6514	68.473	68.021	69.672	0					134	59	4	0	0	0	2.6167E-05	4	15940	15940;15991;16039;16086		139.54	97.449	1	662200			23793	545	15677	15833	32248;32249;32250;32251	32248		26			-0.053887354851212876
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(140)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7573852539062	2	559.757358	1117.50016	0.62912	0.00035216	-0.39474	-0.00022096	0.23439	0.0001312	559.7570654519249	65.468	0.50336	65.534	65.285	65.788	0.066872					57	19	4	0	0	0	2.6167E-05	1	14899	14899		139.54	97.449	1	962020			23794	545	15677	15833	32252	32252		26			-0.053887354851212876
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(140)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7578735351562	2	559.757358	1117.50016	0.4942	0.00027663	0.31482	0.00017622	0.80902	0.00045286	559.7574907681224	68.472	1.3718	68.535	68.103	69.475	0.063507					129	51	3	0	0	0	2.6167E-05	5	15728	15728;15771;15818;15866;15913		139.54	97.449	1	656650			23795	545	15677	15833	32253;32254;32255;32256;32257	32253		26			-0.053887354851212876
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(230)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.2998046875	2	616.29939	1230.58423	-0.21439	-0.00013213	1.1692	0.00072058	0.95482	0.00058845	616.300113147533	77.669	1.6767	77.669	77.338	79.015	0					184	60	5	0	0	0	1.9773E-33	7	18730	18687;18730;18773;18821;18829;18865;19017		232.51	161.38	1	7342700			23796	545	15678	15834	32258;32259;32260;32261;32262;32263;32264	32259		26			-0.021842043882088547
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(230)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.2996826171875	2	616.29939	1230.58423	0.22027	0.00013575	-0.14354	-8.8464E-05	0.076731	4.7289E-05	616.2994528427193	79.911	5.3689	79.911	78.846	84.215	0					498	186	5	0	0	0	1.9773E-33	7	19402	19113;19162;19307;19355;19402;19446;19494		232.51	157.58	1	8886600			23797	545	15678	15834	32265;32266;32267;32268;32269;32270;32271	32269		26			-0.021842043882088547
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(230)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.2998046875	2	616.29939	1230.58423	-0.019122	-1.1785E-05	1.0711	0.00066014	1.052	0.00064835	616.3000280595239	77.632	1.7375	77.666	77.342	79.08	0.034485					186	61	5	0	0	0	1.9773E-33	4	18567	18516;18567;18612;18654		232.51	154.36	1	6928100			23798	545	15678	15834	32272;32273;32274;32275	32273		26			-0.021842043882088547
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(230)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.2996215820312	2	616.29939	1230.58423	0.026788	1.6509E-05	0.098474	6.0689E-05	0.12526	7.7199E-05	616.2995482034803	79.867	5.8003	79.893	78.397	84.197	0.026428					578	207	5	0	0	0	1.9773E-33	10	19214	18867;18969;19019;19066;19116;19164;19214;19266;19315;19378		232.51	161.38	1	7627600			23799	545	15678	15834	32276;32277;32278;32279;32280;32281;32282;32283;32284;32285	32282		26			-0.021842043882088547
VYTVVDEMFL	10	Unmodified	_VYTVVDEMFL_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.3029174804688	2	608.301933	1214.58931	0.33892	0.00020617	0.98746	0.00060067	1.3264	0.00080684	608.3025543700152	89.85	0.90485	89.85	89.59	90.495	0					92	36	4	0	0	0	3.9804E-16	3	22458	22410;22458;22504		181.33	134.93	1	2113900			23800	545	15678	15835	32286;32287;32288	32287					-0.009399005256000237
VYTVVDEMFL	10	Unmodified	_VYTVVDEMFL_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.3031616210938	2	608.301933	1214.58931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.479	1	90.479	89.979	90.979	0								0	0	0	0.25847	1	22649	22649		22.736	6.5872	1				23801	545	15678	15835	32289	32289					-0.009399005256000237
VYTVVDEMFL	10	Unmodified	_VYTVVDEMFL_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.3029174804688	2	608.301933	1214.58931	0.38355	0.00023331	1.0276	0.00062508	1.4111	0.00085839	608.3024873368005	89.792	1.1231	89.826	89.604	90.728	0.034065					101	45	4	0	0	0	6.6773E-25	3	22284	22244;22284;22336		214.14	146.06	1	2189500			23802	545	15678	15835	32290;32291;32292	32291					-0.009399005256000237
VYTVVPSWDF	10	Unmodified	_VYTVVPSWDF_					0	0	0			REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8004760742188	2	606.800414	1211.58628	0.94476	0.00057328	0.38835	0.00023565	1.3331	0.00080893	606.8006275355549	81.948	1.9965	81.948	81.145	83.141	0					127	69	3	0	0	0	0.35104	1	20154	20154		17.113	1.8644	1	279320	+		23803	10090	15679	15836	32293	32293					-0.011054075881020253
VYTYIQSRF	9	Unmodified	_VYTYIQSRF_					0	0	0		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;DYRK4|p.R355Dfs*12|1|0.26|ENSG00000010219|chr12:4610196-4610196|A/-|frameshift_variant;nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000010219|Q9NR20-5|DYRK4	nc|ENSG00000010219|Q9NR20-5|DYRK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3278198242188	2	588.806031	1175.59751	0.33232	0.00019567	0.057412	3.3805E-05	0.38973	0.00022948	588.8060841261503	52.618	0.30857	52.618	52.504	52.813	0					16	10	2	0	0	0	0.23347	1	11093	11093		18.373	8.99	1	78716			23804	410	15680	15837	32294	32294					0.016734145060127048
VYTYIQSRF	9	Unmodified	_VYTYIQSRF_					0	0	0		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;DYRK4|p.R355Dfs*12|1|0.26|ENSG00000010219|chr12:4610196-4610196|A/-|frameshift_variant;nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000010219|Q9NR20-5|DYRK4	nc|ENSG00000010219|Q9NR20-5|DYRK4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3282470703125	2	588.806031	1175.59751	0.55071	0.00032426	0.6874	0.00040474	1.2381	0.00072901	588.8062768220008	52.583	0.31141	52.65	52.493	52.804	0.067173					13	11	2	0	0	0	0.24533	1	10949	10949		12.241	3.6474	1	68638			23805	410	15680	15837	32295	32295					0.016734145060127048
VYVAGAPRF	9	Unmodified	_VYVAGAPRF_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2720947265625	2	490.271627	978.528701	0.13742	6.7371E-05	-0.18359	-9.0009E-05	-0.046175	-2.2638E-05	490.2714585169293	48.817	0.48313	48.817	48.605	49.088	0					26	16	2	0	0	0	0.083504	1	9952	9952		36.044	16.787	1	84018			23806	2869	15681	15838	32296	32296					0.03857794996986286
VYVAGAPRF	9	Unmodified	_VYVAGAPRF_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2706604003906	2	490.271627	978.528701	0.093131	4.5659E-05	-0.031015	-1.5206E-05	0.062116	3.0454E-05	490.2714807841511	48.731	0.53477	48.808	48.5	49.034	0.076603					31	17	3	0	0	0	0.083504	1	9812	9812		36.044	17.909	1	71258			23807	2869	15681	15838	32297	32297					0.03857794996986286
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.2971496582031	2	488.29731	974.580068	0.25044	0.00012229	0.15504	7.5704E-05	0.40548	0.00019799	488.2972543603173	79.206	0.636	79.206	78.954	79.59	0					79	21	5	0	0	0	0.0046476	3	19231	19178;19231;19284		85.357	41.498	1	3392700			23808	2888	15682	15839	32298;32299;32300	32299					0.0917611897103825
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2972412109375	2	488.29731	974.580068	0.11563	5.6463E-05	0.10856	5.3007E-05	0.22419	0.00010947	488.2972875367743	79.178	0.83722	79.204	78.932	79.769	0.026436					85	29	4	0	0	0	0.004541	3	19055	19011;19055;19098		89.427	47.587	1	4886700			23809	2888	15682	15839	32301;32302;32303	32302					0.0917611897103825
VYVATFLGF	9	Unmodified	_VYVATFLGF_					0	0	0		ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.7755432128906	2	508.776211	1015.53787	0.562	0.00028593	0.084077	4.2776E-05	0.64608	0.00032871	508.7758531245957	92.776	0.59634	92.776	92.531	93.128	0					59	22	4	0	0	0	0.00065346	2	23340	23340;23387		129.2	65.638	1	315000			23810	5281	15683	15840	32304;32305	32304					0.030721435626674065
VYVATFLGF	9	Unmodified	_VYVATFLGF_					0	0	0		ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.77630615234375	2	508.776211	1015.53787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.822	1	92.86	92.36	93.36	0.037369								0	0	0	2.5299E-13	1	23202	23202		129.2	65.638	1				23811	5281	15683	15840	32306	32306					0.030721435626674065
VYVATGLKF	9	Unmodified	_VYVATGLKF_					0	0	0		ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.2887878417969	2	499.289485	996.564418	0.42018	0.00020979	-1.6002	-0.00079894	-1.18	-0.00058915	499.28864167172935	79.191	0.58028	79.191	78.982	79.562	0					46	19	3	0	0	0	0.11547	1	19237	19237		29.082	8.628	1	373720			23812	3605	15684	15841	32307	32307					0.06599832453991894
VYVATGLKF	9	Unmodified	_VYVATGLKF_					0	0	0		ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	499.289485	996.564418	0.28612	0.00014285	-1.6528	-0.00082521	-1.3667	-0.00068236	499.2885637981079	79.145	0.5348	79.172	78.958	79.493	0.026428	-0.0095742	-1.606E-05	NaN	29.082	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478240			23813	3605	15684	15841							0.06599832453991894
VYVDAVGQF	9	Unmodified	_VYVDAVGQF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7796325683594	2	499.2531	996.491647	0.68496	0.00034197	0.6499	0.00032446	1.3349	0.00066643	499.2533377319167	65.358	0.6441	65.358	65.001	65.645	0					26	23	2	0	0	0	0.1789	1	15037	15037		29.082	14.5	1	82015			23814	1948	15685	15842	32308	32308					-0.006739213394212129
VYVDFEGINF	10	Unmodified	_VYVDFEGINF_					0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7901611328125	2	601.790047	1201.56554	0.46712	0.00028111	-0.019733	-1.1875E-05	0.44738	0.00026923	601.7900331105515	88.729	1.0936	88.729	88.232	89.326	0					115	43	4	0	0	0	1.3404E-08	3	22123	22087;22123;22167		157.8	127.16	1	2173200			23815	5739	15686	15843	32309;32310;32311	32310					-0.02717997967761221
VYVDFEGINF	10	Unmodified	_VYVDFEGINF_					0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7901000976562	2	601.790047	1201.56554	0.47444	0.00028551	-0.089632	-5.394E-05	0.38481	0.00023157	601.7899953199643	88.718	1.1123	88.751	88.49	89.603	0.032265					122	44	4	0	0	0	2.9509E-16	4	21964	21918;21964;22019;22060		185.05	150.65	1	1851700			23816	5739	15686	15843	32312;32313;32314;32315	32313					-0.02717997967761221
VYVDLGGSHVF	11	Unmodified	_VYVDLGGSHVF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.8038330078125	2	596.803488	1191.59242	0.3816	0.00022774	0.32295	0.00019274	0.70455	0.00042048	596.8036089635799	63.247	0.98124	63.247	63.073	64.054	0					99	35	4	0	0	0	4.8464E-21	3	14377	14334;14377;14490		199.75	166.96	1	2623700			23817	4105	15687	15844	32316;32317;32318	32317					0.004291106434266112
VYVDLGGSHVF	11	Unmodified	_VYVDLGGSHVF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.8038330078125	2	596.803488	1191.59242	0.2328	0.00013894	0.51274	0.000306	0.74554	0.00044494	596.8037686579845	63.181	1.2368	63.254	63.054	64.291	0.072701					103	46	4	0	0	0	4.5299E-14	5	14196	14150;14196;14242;14355;14433		185.05	157.42	1	2729800			23818	4105	15687	15844	32319;32320;32321;32322;32323	32320					0.004291106434266112
VYVDVEVEDF	10	Unmodified	_VYVDVEVEDF_					0	0	0		tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.192626953125	3	405.192288	1212.55504	0.061911	2.5086E-05	1.1408	0.00046224	1.2027	0.00048732	405.52708068288223	38.922	0.48475	39.009	38.835	39.32	0.08688					35	18	3	0	0	0	0.45443	1	6822	6822		1.9064	0.1641	1	46790			23819	13578	15688	15845	32324	32324					-0.04274025412860283
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.30078125	2	539.300581	1076.58661	0.37119	0.00020018	0.14863	8.0154E-05	0.51981	0.00028033	539.3005619646641	46.986	1.1492	46.986	46.728	47.877	0					95	40	4	0	0	0	0.0045978	3	9376	9376;9424;9476		87.258	41.559	1	1472300			23820	1029	15689	15846	32325;32326;32327	32325					0.05138012131760661
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.3009033203125	2	539.300581	1076.58661	0.45527	0.00024553	0.088352	4.7648E-05	0.54363	0.00029318	539.300524303979	46.877	1.2265	46.961	46.725	47.951	0.083096					107	48	5	0	0	0	0.0034159	4	9223	9223;9265;9310;9356		107.1	53.267	1	1176000			23821	1029	15689	15846	32328;32329;32330;32331	32328					0.05138012131760661
VYVGAVNRI	9	Unmodified	_VYVGAVNRI_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7900390625	2	495.790184	989.565815	-0.016745	-8.3019E-06	-0.41922	-0.00020784	-0.43596	-0.00021615	495.7899633262866	44.262	0.46778	44.262	44.063	44.531	0					23	15	2	0	0	0	0.092418	1	8612	8612		34.102	9.4286	1	85821			23822	1847	15690	15847	32332	32332					0.0706146654274562
VYVGAVNRI	9	Unmodified	_VYVGAVNRI_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7899169921875	2	495.790184	989.565815	0.11268	5.5864E-05	-0.33982	-0.00016848	-0.22714	-0.00011262	495.78998400467583	44.163	0.34862	44.252	44.1	44.449	0.088924					23	11	3	0	0	0	0.092418	1	8431	8431		34.102	3.8776	1	76005			23823	1847	15690	15847	32333	32333					0.0706146654274562
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.79248046875	2	526.792392	1051.57023	0.74217	0.00039097	-0.53853	-0.00028369	0.20364	0.00010727	526.7922116362513	80.03	1.2217	80.03	79.621	80.843	0					147	42	6	0	0	0	3.5265E-09	5	19476	19428;19476;19521;19567;19620		170.55	105.32	1	5109000			23824	4573	15691	15848	32334;32335;32336;32337;32338	32335					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.79248046875	2	526.792392	1051.57023	0.43501	0.00022916	-0.19581	-0.00010315	0.23919	0.000126	526.7923930034085	80.008	1.3274	80.035	79.648	80.975	0.026428					149	46	6	0	0	0	3.5265E-09	6	19308	19259;19308;19351;19400;19446;19501		170.55	114.37	1	7414100			23825	4573	15691	15848	32339;32340;32341;32342;32343;32344	32340					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2822265625	2	526.792392	1051.57023	0.48602	0.00025603	0.9594	0.00050541	1.4454	0.00076144	526.7928787320093	81.102	0.44888	81.126	80.882	81.331	0.023605					22	15	2	0	0	0	0.10264	1	19580	19580		43.858	26.745	1	98942			23826	4573	15691	15848	32345	32345					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	526.792392	1051.57023	0.79068	0.00041652	0.90698	0.00047779	1.6977	0.00089432	526.7929872883279	80.998	0.50394	80.998	80.843	81.347	0	-0.064092	-1.5564E-05	NaN	58.679	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88553			23827	4573	15691	15848							0.046509309656585174
VYVGHEVFEN	10	Unmodified	_VYVGHEVFEN_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3008422851562	2	596.785296	1191.55604	0.4524	0.00026998	-0.38573	-0.0002302	0.066661	3.9782E-05	596.7849423485162	64.554	0.53806	64.554	64.382	64.92	0					38	19	3	0	0	0	0.40223	1	14762	14762		11.64	2.2572	1	288350			23828	4055	15692	15849	32346	32346					-0.032077662532856266
VYVGSFSWW	9	Unmodified	_VYVGSFSWW_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.7687377929688	2	565.768917	1129.52328	0.34018	0.00019246	-0.17372	-9.8285E-05	0.16646	9.4178E-05	565.7685544097625	91.132	1.94	91.132	90.911	92.851	0					113	71	2	0	0	0	3.5265E-09	2	22886	22878;22886		170.55	111.87	1	2773900			23829	3408	15693	15850	32347;32348	32348					-0.03629928585473863
VYVGWGER	8	Unmodified	_VYVGWGER_					0	0	0			REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.25640869140625	2	483.245609	964.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.056	1	37.14	36.64	37.64	0.083553								0	0	0	0.38822	1	6281	6281		2.3027	0	1		+		23830	9456	15694	15851	32349	32349					-0.006993684167696301
VYVGYFVI	8	Unmodified	_VYVGYFVI_					0	0	0			REV__L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|20|1|anti-sense	REV__L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|20|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.2645568847656	2	480.265479	958.516405	0.24696	0.0001186	-0.22593	-0.0001085	0.021029	1.0099E-05	480.265318439739	99.288	0.31158	99.331	99.208	99.519	0.042831					25	20	2	0	0	0	0.53771	1	25212	25212		2.8892	0.58649	1	59319	+		23831	12706	15695	15852	32350	32350					0.03548758533952423
VYVIWAQQL	9	Unmodified	_VYVIWAQQL_					0	0	0			REV__ENST00000370951.5_1_1:70716702-70716798:+|nuORF	REV__ENST00000370951.5_1_1:70716702-70716798:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.323974609375	2	560.313492	1118.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.175	1	53.24	52.74	53.74	0.06543								0	0	0	0.22979	1	11143	11143		13.508	6.2187	1		+		23832	11595	15696	15853	32351	32351					0.057869063740326965
VYVKDLSSF	9	Unmodified	_VYVKDLSSF_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2823486328125	2	529.281857	1056.54916	0.6012	0.0003182	-0.74838	-0.00039611	-0.14719	-7.7904E-05	529.2818129482188	54.224	0.58464	54.224	53.867	54.451	0					42	20	3	0	0	0	0.026809	1	11619	11619		53.404	28.005	1	349100			23833	1253	15697	15854	32352	32352					0.023149208661379816
VYVLTNLAYF	10	Unmodified	_VYVLTNLAYF_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.82568359375	2	601.826432	1201.63831	0.39937	0.00024035	-0.016666	-1.003E-05	0.38271	0.00023032	601.8263120570854	90.491	0.89627	90.491	90.256	91.152	0					102	32	5	0	0	0	2.9509E-16	3	22620	22620;22668;22719		185.05	141.07	1	3199500			23834	1361	15698	15855	32353;32354;32355	32353					0.04555755825640517
VYVLTNLAYF	10	Unmodified	_VYVLTNLAYF_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8267822265625	2	601.826432	1201.63831	0.14766	8.8868E-05	0.22316	0.0001343	0.37082	0.00022317	601.8264386161997	90.455	0.90492	90.489	90.263	91.168	0.034065					105	35	4	0	0	0	6.0139E-32	4	22497	22450;22497;22605;22621		215.27	175.32	1	2135200			23835	1361	15698	15855	32356;32357;32358;32359	32357					0.04555755825640517
VYVLYPCE	8	Unmodified	_VYVLYPCE_					0	0	0			REV__ENSG00000176170|ENST00000592299|SPHK1	REV__ENSG00000176170|ENST00000592299|SPHK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2414245605469	2	493.238604	984.462655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.33	1	106.36	105.86	106.86	0.029739								0	0	0	0.38822	1	27219	27219		2.8892	0	1		+		23836	10396	15699	15856	32360	32360					-0.03019781960074397
VYVQELQKL	9	Unmodified	_VYVQELQKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.3240356445312	2	560.324057	1118.63356	0.28842	0.00016161	0.4146	0.00023231	0.70303	0.00039392	560.3241228588884	53.164	0.465	53.164	52.945	53.41	0					45	18	3	0	0	0	0.078774	1	11284	11284		37.075	17.636	1	169760			23837	1301	15700	15857	32361	32361					0.07898871682891695
VYVQELQKL	9	Unmodified	_VYVQELQKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.8272094726562	2	560.324057	1118.63356	0.50702	0.0002841	0.062268	3.489E-05	0.56929	0.00031899	560.3238776881662	53.14	0.35406	53.205	53.013	53.367	0.06543					35	16	3	0	0	0	0.30397	1	11098	11098		6.2058	2.9245	1	110730			23838	1301	15700	15857	32362	32362					0.07898871682891695
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2970581054688	2	552.297842	1102.58113	0.31089	0.00017171	-1.3608	-0.00075156	-1.0499	-0.00057985	552.2975153360873	52.782	0.98903	52.782	52.555	53.544	0					114	38	4	0	0	0	0.00034446	2	11135	11135;11185		134.3	69.061	1	797810			23839	5190	15701	15858	32363;32364	32363					0.033943333399292897
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2977905273438	2	552.297842	1102.58113	0.51366	0.0002837	-1.5935	-0.00088009	-1.0798	-0.00059639	552.2974921048667	52.73	0.906	52.798	52.578	53.484	0.067173					116	40	4	0	0	0	0.0028323	3	10986	10986;11029;11089		110.67	56.842	1	733300			23840	5190	15701	15858	32365;32366;32367	32365					0.033943333399292897
VYVQILQKL	9	Unmodified	_VYVQILQKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.298095703125	2	552.344792	1102.67503	0.66808	0.00036901	-0.39173	-0.00021637	0.27635	0.00015264	552.3445303590171	64.668	0.60287	64.668	64.485	65.088	0					40	21	3	0	0	0	0.055474	1	14807	14807		58.679	34.658	1	314660			23841	970	15702	15859	32368	32368					0.127800524422355
VYVQILQKL	9	Unmodified	_VYVQILQKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.298095703125	2	552.344792	1102.67503	0.61494	0.00033966	-0.1051	-5.8051E-05	0.50984	0.00028161	552.3445860109721	64.635	0.58241	64.704	64.478	65.061	0.068916					35	21	3	0	0	0	0.10264	1	14631	14631		43.858	29.952	1	232380			23842	970	15702	15859	32369	32369					0.127800524422355
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.3217163085938	2	531.321317	1060.62808	0.64615	0.00034331	0.29375	0.00015608	0.93991	0.00049939	531.321413545345	54.455	1.1049	54.455	54.164	55.269	0					126	46	4	0	0	0	8.832E-06	3	11650	11650;11693;11739		149.99	83.538	1	4088200			23843	673	15703	15860	32370;32371;32372	32370					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3216552734375	2	531.321317	1060.62808	0.67622	0.00035929	0.2612	0.00013878	0.93741	0.00049807	531.3213640086427	54.386	1.2121	54.451	54.219	55.432	0.065128					129	54	4	0	0	0	0.00070411	3	11500	11500;11540;11592		128.37	72.863	1	3015000			23844	673	15703	15860	32373;32374;32375	32373					0.10019192891104467
VYVSFASLID	10	Unmodified	_VYVSFASLID_					0	0	0			REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF	REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.268798828125	2	557.294965	1112.57538	0.40446	0.0002254	-1.3421	-0.00074796	-0.93766	-0.00052255	557.2941207963389	59.885	0.62936	59.957	59.675	60.304	0.072338					43	24	3	0	0	0	0.31496	1	13248	13248		13.906	0.86358	1	142770	+		23845	7951	15704	15861	32376	32376					0.023591900376231933
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2852172851562	2	546.285266	1090.55598	-0.021515	-1.1754E-05	-0.4617	-0.00025222	-0.48321	-0.00026397	546.2853142227452	33.528	0.85465	33.528	33.13	33.984	0					68	31	3	0	0	0	0.11816	2	5333	5333;5380		28.495	11.382	1	102430			23846	4402	15705	15862	32377;32378	32377					0.0143227853739063
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2853393554688	2	546.285266	1090.55598	0.023784	1.2993E-05	-0.27868	-0.00015224	-0.25489	-0.00013924	546.2853537807066	33.48	0.86888	33.554	33.169	34.038	0.074322					75	36	4	0	0	0	0.1646	2	5189	5189;5231		22.658	10.417	1	126050			23847	4402	15705	15862	32379;32380	32379					0.0143227853739063
VYVTTTEMW	9	Unmodified	_VYVTTTEMW_					0	0	0		ENSG00000149177|ENST00000418331|PTPRJ;nc|ENSG00000149177|Q12913-3|PTPRJ	ENSG00000149177|ENST00000418331|PTPRJ	ENSG00000149177|ENST00000418331|PTPRJ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.768310546875	2	565.26535	1128.51615	0.15218	8.6022E-05	1.6828	0.00095126	1.835	0.0010373	565.7685344259384	91.147	1.5199	91.182	90.909	92.428	0.035446					139	53	3	0	0	0	0.045114	1	22714	22714		44.407	14.182	1	2649000			23848	3388	15706	15863	32381	32381					-0.04297029248209583
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.76373291015625	2	496.763635	991.512717	0.28303	0.0001406	-0.65784	-0.00032679	-0.37481	-0.00018619	496.7635468927835	51.838	1.0987	51.838	51.386	52.484	0					75	37	3	0	0	0	1.3047E-05	2	10859	10859;10972		146.01	107.86	1	976800			23849	4404	15707	15864	32382;32383	32382					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7637634277344	2	496.763635	991.512717	0.3526	0.00017516	-0.71765	-0.0003565	-0.36504	-0.00018134	496.7635420599009	51.737	0.80164	51.806	51.613	52.415	0.069878					63	30	3	0	0	0	1.3047E-05	1	10718	10718		146.01	107.86	1	634700			23850	4404	15707	15864	32384	32384					0.01662088760087954
VYVVYPQLV	9	Unmodified	_VYVVYPQLV_					0	0	0			REV__ENST00000426919.5_1_10:103345907-103347065:-|nuORF	REV__ENST00000426919.5_1_10:103345907-103347065:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.3096313476562	2	540.310418	1078.60628	0.53906	0.00029126	-0.33392	-0.00018042	0.20514	0.00011084	540.3099311333043	97.147	0.50349	97.147	96.908	97.412	0					48	24	3	0	0	0	0.31496	1	24752	24752		4.756	0.42677	1	179200	+		23851	11834	15708	15865	32385	32385					0.07012388142516102
VYVYTAELY	9	Unmodified	_VYVYTAELY_					0	0	0		ENST00000448810.5_1_5:131726469-131729504:+|nuORF;nc|ENSG00000197375|O76082-2|SLC22A5;ENST00000475308.1_1_5:131726319-131729961:+|nuORF;ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.829345703125	2	560.78169	1119.54883	0.64922	0.00036407	-2.2956	-0.0012873	-1.6464	-0.00092327	560.7807571496882	81.174	0.4259	81.198	81.051	81.477	0.023605					22	14	2	0	0	0	0.22289	1	19697	19697		18.135	0	1	126630			23852	5292	15709	15866	32386	32386					-0.006164988536966121
VYWEGIDEP	9	Unmodified	_VYWEGIDEP_					0	0	0		nc|ENSG00000124253|P35558-2|PCK1;ENSG00000124253|ENST00000319441|PCK1	nc|ENSG00000124253|P35558-2|PCK1	nc|ENSG00000124253|P35558-2|PCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.251953125	2	554.253297	1106.49204	0.75191	0.00041675	-3.0502	-0.0016906	-2.2983	-0.0012738	554.2517015881517	54.539	0.39671	54.539	54.371	54.768	0					26	19	2	0	0	0	0.21398	1	11707	11707		16.942	2.104	1	161010			23853	2251	15710	15867	32387	32387					-0.056945464102454935
VYWEGIDEP	9	Unmodified	_VYWEGIDEP_					0	0	0		nc|ENSG00000124253|P35558-2|PCK1;ENSG00000124253|ENST00000319441|PCK1	nc|ENSG00000124253|P35558-2|PCK1	nc|ENSG00000124253|P35558-2|PCK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.0781860351562	2	554.253297	1106.49204	0.80872	0.00044824	-2.5729	-0.001426	-1.7642	-0.00097781	554.2518306502706	54.533	0.31311	54.598	54.466	54.779	0.065128					24	18	2	0	0	0	0.25979	1	11519	11519		11.64	0.52583	1	245470			23854	2251	15710	15867	32388	32388					-0.056945464102454935
VYWEMEDKN	9	Unmodified	_VYWEMEDKN_					0	0	0		nc|ENSG00000120217|Q9NZQ7-3|CD274;nc|ENSG00000120217|Q9NZQ7-4|CD274;ENSG00000120217|ENST00000381577|CD274	nc|ENSG00000120217|Q9NZQ7-3|CD274	nc|ENSG00000120217|Q9NZQ7-3|CD274	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7889404296875	2	607.263339	1212.51212	0.49454	0.00030032	-1.2759	-0.00077483	-0.78139	-0.00047451	607.2625059140217	90.182	0.27502	90.182	90.138	90.413	0					21	11	2	0	0	0	0.24635	1	22583	22583		10.824	3.5347	1	172140			23855	2111	15711	15868	32389	32389					-0.08563118741926701
VYWKIYNSI	9	Unmodified	_VYWKIYNSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.3192138671875	2	593.318774	1184.623	0.48631	0.00028854	-0.031996	-1.8984E-05	0.45432	0.00026956	593.3186982278617	63.581	0.91977	63.581	63.345	64.264	0					54	31	3	0	0	0	0.00066972	2	14431	14431;14480		128.93	92.426	1	627210			23856	1910	15712	15869	32390;32391	32390					0.03806889028464866
VYWKIYNSI	9	Unmodified	_VYWKIYNSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3192138671875	2	593.318774	1184.623	0.40157	0.00023826	0.076727	4.5523E-05	0.4783	0.00028378	593.3189336673693	63.482	0.83325	63.553	63.341	64.174	0.071014					58	28	3	0	0	0	0.00066972	2	14282	14282;14335		128.93	92.426	1	707140			23857	1910	15712	15869	32392;32393	32392					0.03806889028464866
VYWLLSLL	8	Unmodified	_VYWLLSLL_					0	0	0		ENSG00000110108|ENST00000227525|TMEM109	ENSG00000110108|ENST00000227525|TMEM109	ENSG00000110108|ENST00000227525|TMEM109	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7842102050781	2	503.802229	1005.5899	0.51402	0.00025896	-1.7592	-0.00088631	-1.2452	-0.00062735	503.801083718176	97.745	0.67505	97.786	97.755	98.43	0.040855					56	34	2	0	0	0	0.45077	1	24763	24763		19.439	1.304	1	170860			23858	1656	15713	15870	32394	32394					0.08733306976421318
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(48)F	0	0	1		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.2867431640625	2	609.286617	1216.55868	0.36398	0.00022177	0.74021	0.000451	1.1042	0.00067277	609.2875682014067	78.002	0.66602	78.002	77.606	78.272	0					46	22	3	0	0	0	0.034936	1	18902	18902		47.594	28.337	1	213890			23859	2044	15714	15871	32395	32395		127			-0.04093634119976741
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(96)F	0	0	1		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.2866821289062	2	609.286617	1216.55868	0.8241	0.00050211	0.12253	7.4655E-05	0.94663	0.00057677	609.2866600326009	80.081	1.3661	80.081	79.536	80.902	0					94	47	3	0	0	0	0.0043591	2	19478	19478;19544		96.367	81.118	1	271930			23860	2044	15714	15871	32396;32397	32396		127			-0.04093634119976741
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(83)F	0	0	1		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.286376953125	2	609.286617	1216.55868	0.6213	0.00037855	0.51375	0.00031302	1.135	0.00069157	609.7883919113323	77.939	0.70203	77.973	77.649	78.351	0.034477					46	23	3	0	0	0	0.0050339	1	18693	18693		82.529	50.224	1	177090			23861	2044	15714	15871	32398	32398		127			-0.04093634119976741
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(130)F	0	0	1		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.2872924804688	2	609.286617	1216.55868	0.65988	0.00040206	0.26333	0.00016044	0.92321	0.0005625	609.2866213084145	79.911	1.1622	79.938	79.519	80.682	0.026428					78	41	3	0	0	0	0.00061878	2	19261	19261;19348		129.77	112.66	1	284600			23862	2044	15714	15871	32399;32400	32399		127			-0.04093634119976741
VYYFPFWSL	9	Unmodified	_VYYFPFWSL_					0	0	0			REV__ENST00000591735.2_1_19:1491211-1495711:+|nuORF	REV__ENST00000591735.2_1_19:1491211-1495711:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.2060546875	3	407.870821	1220.59063	0.49395	0.00020147	1.0444	0.000426	1.5384	0.00062746	408.206234097064	37.44	0.95579	37.44	37.283	38.239	0					56	33	2	0	0	0	0.25809	1	6552	6552		1.1933	0.41681	1	72120	+		23863	8778	15715	15872	32401	32401					-0.010838983745316
VYYGSLGLWL	10	Unmodified	_VYYGSLGLWL_					0	0	0		nc|ENSG00000204070|Q8N2H4-2|SYS1;ENST00000461890.1_1_20:43991814-43994327:+|nuORF;ENSG00000204070|ENST00000243918|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	0.73429	0.00043016	-0.28698	-0.00016811	0.44731	0.00026204	585.813093704842	104.38	0.69303	104.42	103.86	104.55	0.034004					107	67	2	0	0	0	0.45443	1	26606	26606		3.9444	0	1	217190			23864	5450	15716	15873	32402	32402					0.03407486654191416
VYYHMWVF	8	Unmodified	_VYYHMWVF_					0	0	0			REV__ENST00000526139.1_1_11:88911121-88933495:+|nuORF	REV__ENST00000526139.1_1_11:88911121-88933495:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2815551757812	2	572.767863	1143.52117	0.29073	0.00016652	2.5551	0.0014635	2.8458	0.00163	572.7693126308191	82.661	0.36651	82.683	82.537	82.904	0.021744					17	12	2	0	0	0	0.35759	1	20155	20155		11.114	1.0405	1	109190	+		23865	8213	15717	15874	32403	32403					-0.04484680594941892
VYYHMWVF	8	Unmodified	_VYYHMWVF_					0	0	0			REV__ENST00000526139.1_1_11:88911121-88933495:+|nuORF	REV__ENST00000526139.1_1_11:88911121-88933495:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	572.767863	1143.52117	0.45068	0.00025814	2.0643	0.0011824	2.515	0.0014405	572.7693911682147	82.68	0.41852	82.68	82.482	82.9	0	-0.0014259	-0.00028099	NaN	17.087	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112900	+		23866	8213	15717	15874							-0.04484680594941892
VYYMIDVW	8	Unmodified	_VYYMIDVW_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7575073242188	2	544.759704	1087.50485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.88	1	100.92	100.42	101.42	0.042839								0	0	0	0.38822	1	25660	25660		5.7604	0.52976	1		+		23867	10822	15718	15875	32404	32404					-0.035398065517028954
VYYPELFVW	9	Unmodified	_VYYPELFVW_					0	0	0		ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion	ENSG00000134986|ENST00000257435|NREP	ENSG00000134986|ENST00000257435|NREP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.3084106445312	2	608.307875	1214.6012	0.69983	0.00042571	0.61456	0.00037384	1.3144	0.00079955	608.3081013813178	98.581	1.0817	98.581	98.312	99.393	0					177	68	4	0	0	0	0.0030029	2	25103	25061;25103		109.63	86.893	1	2562000			23868	2704	15719	15876	32405;32406	32406					0.0024808427988318726
VYYPELFVW	9	Unmodified	_VYYPELFVW_					0	0	0		ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion	ENSG00000134986|ENST00000257435|NREP	ENSG00000134986|ENST00000257435|NREP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.308349609375	2	608.307875	1214.6012	0.79606	0.00048425	0.57749	0.00035129	1.3735	0.00083554	608.3080123828518	98.517	1.2391	98.559	98.313	99.553	0.041931					174	77	4	0	0	0	0.0046476	2	24945	24903;24945		85.357	69.51	1	2450500			23869	2704	15719	15876	32407;32408	32408					0.0024808427988318726
VYYPELFVW	9	Unmodified	_VYYPELFVW_					0	0	0		ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion	ENSG00000134986|ENST00000257435|NREP	ENSG00000134986|ENST00000257435|NREP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.3101196289062	2	608.307875	1214.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.625	1	99.667	99.167	100.17	0.042839								0	0	0	0.13043	1	25275	25275		28.487	17.687	1				23870	2704	15719	15876	32409	32409					0.0024808427988318726
VYYPRLPF	8	Unmodified	_VYYPRLPF_					0	0	0			REV__ENSG00000171199|ENST00000399575|OPRPN	REV__ENSG00000171199|ENST00000399575|OPRPN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2393798828125	2	527.789653	1053.56475	0.42042	0.00022189	3.0799	0.0016256	3.5004	0.0018475	527.7911063613783	62.848	0.33852	62.848	62.66	62.999	0					15	11	2	0	0	0	0.35759	1	14192	14192		11.114	0.93107	1	81412	+		23871	10245	15720	15877	32410	32410					0.0401125217383651
VYYTPVAYKT	10	Unmodified	_VYYTPVAYKT_					0	0	0			REV__tr|U7ST97|U7ST97_FUSNUGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatAPE=3SV=1	REV__tr|U7ST97|U7ST97_FUSNUGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatAPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8163452148438	2	602.816064	1203.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.416	1	98.416	97.916	98.916	0								0	0	0	0.33877	1	25063	25063		1.6526	0	1		+		23872	13165	15721	15878	32411	32411					0.02391165445965271
VYYVSLYGE	9	Unmodified	_VYYVSLYGE_					0	0	0		TDRD6|p.A477Sfs*21|1|0.19|ENSG00000180113|chr6:46689552-46689553|-/C|frameshift_variant;nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	TDRD6|p.A477Sfs*21|1|0.19|ENSG00000180113|chr6:46689552-46689553|-/C|frameshift_variant	TDRD6|p.A477Sfs*21|1|0.19|ENSG00000180113|chr6:46689552-46689553|-/C|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7537231445312	2	546.76604	1091.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.543	1	41.632	41.132	42.132	0.089764								0	0	0	0.28527	1	7630	7630		2.0598	0	1				23873	4799	15722	15879	32412	32412					-0.02457071887829443
VYYYGLAQ	8	Unmodified	_VYYYGLAQ_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7326965332031	2	488.742368	975.470183	-0.13962	-6.8237E-05	1.2329	0.00060258	1.0933	0.00053434	488.74244338044264	33.087	0.48698	33.162	32.992	33.479	0.074322					36	19	2	0	0	0	0.54081	1	5180	5180		0.79363	0	1	21344	+		23874	9815	15723	15880	32413	32413					-0.018533063681502426
VYYYSYLL	8	Unmodified	_VYYYSYLL_					0	0	0		PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant;ENSG00000171862|ENST00000371953|PTEN;nc|ENSG00000171862|P60484-2|PTEN	PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant	PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2733764648438	2	542.273501	1082.53245	0.39168	0.0002124	-0.91845	-0.00049805	-0.52677	-0.00028565	542.2729999108767	79.243	0.67038	79.243	78.782	79.452	0					74	22	5	0	0	0	0.3056	1	19249	19249		34.187	1.4016	1	367890			23875	4466	15724	15881	32414	32414					-0.005515800198054421
WAARTQVEKR	10	Unmodified	_WAARTQVEKR_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.8917541503906	3	415.566794	1243.67855	-0.17136	-7.1213E-05	1.8227	0.00075746	1.6513	0.00068624	415.56776867477515	33.587	0.20319	33.661	33.515	33.718	0.074322					12	7	2	0	0	0	0.45239	1	5214	5214		2.086	0.63089	1	14381			23876	308	15725	15882	32415	32415					0.06646115268790709
WADPGKYAL	9	Unmodified	_WADPGKYAL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.27978515625	2	510.761092	1019.50763	0.29331	0.00014981	0.30178	0.00015414	0.59509	0.00030395	510.76124657606215	53.435	0.42802	53.435	53.254	53.682	0					20	17	2	0	0	0	0.24929	1	11362	11362		9.3831	0	1	110860			23877	1359	15726	15883	32416	32416					-0.0013421510253692759
WADPGKYAL	9	Unmodified	_WADPGKYAL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.2799377441406	2	510.761092	1019.50763	0.40639	0.00020757	0.32253	0.00016473	0.72892	0.0003723	510.76114799173644	53.389	0.43382	53.454	53.222	53.656	0.06543					27	20	2	0	0	0	0.24929	1	11211	11211		9.3831	1.473	1	108160			23878	1359	15726	15883	32417	32417					-0.0013421510253692759
WAELLPGW	8	Unmodified	_WAELLPGW_					0	0	0		ENST00000394467.3_1_X:124461034-124461598:-|nuORF	ENST00000394467.3_1_X:124461034-124461598:-|nuORF	ENST00000394467.3_1_X:124461034-124461598:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.2530212402344	2	486.252903	970.491253	0.10112	4.9168E-05	0.015142	7.363E-06	0.11626	5.6531E-05	486.2530343829822	48.412	0.24552	48.492	48.325	48.571	0.080029					11	7	2	0	0	0	0.3576	1	9703	9703		2.5775	0	1	46305			23879	6326	15727	15884	32418	32418					0.004827037313702931
WAGLCGRF	8	Unmodified	_WAGLCGRF_					0	0	0			REV__ENST00000369774.8_3_10:105360643-105360724:-|nuORF	REV__ENST00000369774.8_3_10:105360643-105360724:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2255554199219	2	455.223623	908.432692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.852	1	97.893	97.393	98.393	0.040855								0	0	0	0.38822	1	24739	24739		0.79363	0	1		+		23880	11586	15728	15885	32419	32419					-0.02518676114743812
WAGNEVELE	9	Unmodified	_WAGNEVELE_					0	0	0			REV__ENSG00000008226|ENST00000308059|DLEC1	REV__ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7427978515625	2	523.743096	1045.47164	-0.33852	-0.0001773	0.049452	2.59E-05	-0.28907	-0.0001514	523.7430028953104	42.704	1.0903	42.704	42.454	43.544	0					97	37	4	0	0	0	0.21398	1	8181	8181		16.942	1.0951	1	816990	+		23881	7959	15729	15886	32420	32420					-0.049277170700406714
WAGRCCPL	8	Unmodified	_WAGRCCPL_					0	0	0		ENST00000354755.5_1_11:86085825-86086272:+|nuORF	ENST00000354755.5_1_11:86085825-86086272:+|nuORF	ENST00000354755.5_1_11:86085825-86086272:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.20989990234375	2	453.209658	904.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.639	1	90.639	90.139	91.139	0								0	0	0	0.38822	1	22698	22698		0.79363	0	1				23882	6114	15730	15887	32421	32421					-0.05126322366493241
WAGRCCPL	8	Unmodified	_WAGRCCPL_					0	0	0		ENST00000354755.5_1_11:86085825-86086272:+|nuORF	ENST00000354755.5_1_11:86085825-86086272:+|nuORF	ENST00000354755.5_1_11:86085825-86086272:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2102966308594	2	453.209658	904.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.682	1	87.712	87.212	88.212	0.030037								0	0	0	0.38822	1	21640	21640		0.79363	0	1				23883	6114	15730	15887	32422	32422					-0.05126322366493241
WARGCLCP	8	Unmodified	_WARGCLCP_					0	0	0		ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENST00000493076.5_1_22:35819109-35819445:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2093505859375	2	453.209658	904.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.77	1	105.77	105.27	106.27	0								0	0	0	0.38822	1	27254	27254		0.79363	0	1				23884	6817	15731	15888	32423	32423					-0.0512632236650461
WARGCLCP	8	Unmodified	_WARGCLCP_					0	0	0		ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENST00000493076.5_1_22:35819109-35819445:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.21002197265625	2	453.209658	904.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.921	1	77.955	77.455	78.455	0.034485								0	0	0	0.38822	1	18671	18671		0.79363	0	1				23885	6817	15731	15888	32424	32424					-0.0512632236650461
WARGCLCP	8	Unmodified	_WARGCLCP_					0	0	0		ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENST00000493076.5_1_22:35819109-35819445:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.20916748046875	2	453.209658	904.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.456	1	82.478	81.978	82.978	0.021744								0	0	0	0.38822	1	20049	20049		0.79363	0	1				23886	6817	15731	15888	32425	32425					-0.0512632236650461
WARGCLCP	8	Unmodified	_WARGCLCP_					0	0	0		ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENST00000493076.5_1_22:35819109-35819445:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2094421386719	2	453.209658	904.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.58	1	105.61	105.11	106.11	0.029739								0	0	0	0.38822	1	27019	27019		0.79363	0	1				23887	6817	15731	15888	32426	32426					-0.0512632236650461
WARNEGTLAEM	11	Unmodified	_WARNEGTLAEM_					0	0	0		ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.2987670898438	2	639.300787	1276.58702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.01	1	43.1	42.6	43.6	0.089764								0	0	0	0.33873	1	8074	8074		1.1933	0.735	1				23888	47	15732	15889	32427	32427					-0.04020936210713444
WASTSIKL	8	Unmodified	_WASTSIKL_					0	0	0			REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	453.2686462402344	2	453.258185	904.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.8	1	39.8	39.3	40.3	0								0	0	0	0.38822	1	7233	7233		6.7232	1.4925	1		+		23889	9028	15733	15890	32428	32428					0.04574686385797122
WATYESFPK	9	Unmodified	_WATYESFPK_					0	0	0			REV__ENSG00000104331|ENST00000262644|BPNT2	REV__ENSG00000104331|ENST00000262644|BPNT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7607421875	2	564.771657	1127.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.142	1	21.142	20.642	21.642	0								0	0	0	0.2722	1	1779	1779		4.756	2.6963	1		+		23890	8503	15734	15891	32429	32429					-0.02990249793674593
WAWFIFWW	8	Unmodified	_WAWFIFWW_					0	0	0		ENSG00000213088|ENST00000368122|ACKR1;nc|ENSG00000213088|Q16570-2|ACKR1	ENSG00000213088|ENST00000368122|ACKR1	ENSG00000213088|ENST00000368122|ACKR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.3025512695312	2	621.300188	1240.58582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.707	1	39.707	39.207	40.207	0								0	0	0	0.38822	1	7205	7205		0.79363	0.26887	1				23891	5540	15735	15892	32430	32430					-0.02484737726649655
WAWPVFLL	8	Unmodified	_WAWPVFLL_					0	0	0		ENST00000540626.5_1_11:71714133-71714271:-|nuORF	ENST00000540626.5_1_11:71714133-71714271:-|nuORF	ENST00000540626.5_1_11:71714133-71714271:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2913208007812	2	516.289288	1030.56402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.966	1	84.989	84.489	85.489	0.023125								0	0	0	0.38643	1	20815	20815		17.087	0	1				23892	7061	15736	15893	32431	32431					0.04996457524794096
WAWRWRQR	8	Unmodified	_WAWRWRQR_					0	0	0		ENST00000478401.1_1_9:100872512-100881310:-|nuORF	ENST00000478401.1_1_9:100872512-100881310:-|nuORF	ENST00000478401.1_1_9:100872512-100881310:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2173156738281	3	415.556452	1243.64753	-0.11166	-4.64E-05	1.2843	0.00053372	1.1727	0.00048732	415.89123982660277	34.362	0.12452	34.438	34.365	34.489	0.076244					7	5	2	0	0	0	0.3576	1	5457	5457		6.7232	1.1999	1	10613			23893	6726	15737	15894	32432	32432					0.03545006745207502
WCALLFYL	8	Unmodified	_WCALLFYL_					0	0	0			REV__nc|ENSG00000011021|P51797-6|CLCN6	REV__nc|ENSG00000011021|P51797-6|CLCN6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2203979492188	2	514.767332	1027.52011	-0.05694	-2.9311E-05	0.67869	0.00034937	0.62175	0.00032006	515.2690706035879	26.728	0.11594	26.814	26.73	26.846	0.0867					10	7	2	0	0	0	0.3576	1	3214	3214		0.79363	0.10326	1	10734	+		23894	7974	15738	15895	32433	32433					0.007451050361396483
WCALLFYL	8	Unmodified	_WCALLFYL_					0	0	0			REV__nc|ENSG00000011021|P51797-6|CLCN6	REV__nc|ENSG00000011021|P51797-6|CLCN6	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	514.767332	1027.52011	-0.11333	-5.8338E-05	0.19585	0.00010082	0.082517	4.2477E-05	514.7671729782594	26.874	0.1085	26.874	26.812	26.921	0	0.029526	-0.00010216	NaN	0.79363	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7626.5	+		23895	7974	15738	15895							0.007451050361396483
WCLHPPRRC	9	Unmodified	_WCLHPPRRC_					0	0	0		ENST00000399151.3_1_21:37642452-37650333:+|nuORF	ENST00000399151.3_1_21:37642452-37650333:+|nuORF	ENST00000399151.3_1_21:37642452-37650333:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7899169921875	2	584.286763	1166.55897	0.40423	0.00023618	0.28887	0.00016878	0.6931	0.00040497	584.7888917697946	20.899	0.51865	20.999	20.898	21.417	0.099497					77	57	2	0	0	0	0.35102	2	1616	1616;1649		0	0	1	17050			23896	6358	15739	15896	32434;32435	32434					-0.01764492881102342
WCLKWFVFL	9	Unmodified	_WCLKWFVFL_					0	0	0			REV__ENSG00000110975|ENST00000228567|SYT10	REV__ENSG00000110975|ENST00000228567|SYT10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.3283081054688	2	621.33063	1240.64671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.75	1	115.75	115.25	116.25	0								0	0	0	0.29233	1	29499	29499		0.6015	0.14316	1		+		23897	8679	15740	15897	32436	32436					0.036010312612916096
WCNRVLVL	8	Unmodified	_WCNRVLVL_					0	0	0			REV__ENSG00000169297|ENST00000378970|NR0B1	REV__ENSG00000169297|ENST00000378970|NR0B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.29010009765625	2	501.781305	1001.54806	0.41449	0.00020798	-1.2349	-0.00061967	-0.82045	-0.00041168	501.7805501432589	79.273	0.96723	79.273	78.875	79.842	0					56	33	2	0	0	0	0.3576	1	19329	19329		8.5933	0	1	135540	+		23898	10167	15741	15898	32437	32437					0.04734428016229231
WCNRVLVL	8	Unmodified	_WCNRVLVL_					0	0	0			REV__ENSG00000169297|ENST00000378970|NR0B1	REV__ENSG00000169297|ENST00000378970|NR0B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	501.29071044921875	2	501.781305	1001.54806	0.23784	0.00011934	-1.0277	-0.00051568	-0.78986	-0.00039634	501.7806577513001	79.298	0.89301	79.325	78.849	79.742	0.026436					61	31	3	0	0	0	0.35759	1	18991	18991		9.3474	0	1	255310	+		23899	10167	15741	15898	32438	32438					0.04734428016229231
WCQRVRQHSP	10	Unmodified	_WCQRVRQHSP_					0	0	0			REV__ENST00000572565.5_1_19:52207684-52207765:+|nuORF	REV__ENST00000572565.5_1_19:52207684-52207765:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.88531494140625	3	432.884129	1295.63056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.358	1	98.4	97.9	98.9	0.041931								0	0	0	0.33959	1	24894	24894		0.69767	0.19171	1		+		23900	12525	15742	15899	32439	32439					-0.005432819228872177
WCRRDPGWAR	10	Unmodified	_WCRRDPGWAR_					0	0	0		ENST00000251642.7_1_17:40264192-40264675:-|nuORF	ENST00000251642.7_1_17:40264192-40264675:-|nuORF	ENST00000251642.7_1_17:40264192-40264675:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8821716308594	3	434.880607	1301.61999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.74	1	27.822	27.322	28.322	0.082134								0	0	0	0.33869	1	3506	3506		1.7423	0.41263	1				23901	5835	15743	15900	32440	32440					-0.018752645773247423
WCRSGFLFNN	10	Unmodified	_WCRSGFLFNN_					0	0	0			REV__ENSG00000127989|ENST00000351870|MTERF1	REV__ENSG00000127989|ENST00000351870|MTERF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.31591796875	2	622.287482	1242.56041	0.16229	0.00010099	-3.0993	-0.0019287	-2.937	-0.0018277	622.2842394997214	93.79	0.39186	93.79	93.506	93.898	0					34	14	3	0	0	0	0.31747	1	23612	23612		5.7319	1.4026	1	196750	+		23902	9009	15744	15901	32441	32441					-0.051165803113690345
WCRSGFLFNN	10	Unmodified	_WCRSGFLFNN_					0	0	0			REV__ENSG00000127989|ENST00000351870|MTERF1	REV__ENSG00000127989|ENST00000351870|MTERF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2850952148438	2	622.287482	1242.56041	0.24028	0.00014952	-2.2016	-0.00137	-1.9613	-0.0012205	622.2847855732888	93.76	0.43896	93.798	93.511	93.95	0.037369					48	17	4	0	0	0	0.43214	1	23520	23520		8.1555	1.0538	1	255250	+		23903	9009	15744	15901	32442	32442					-0.051165803113690345
WCVWPRFF	8	Unmodified	_WCVWPRFF_					0	0	0		ENST00000526607.1_2_9:102669309-102677517:+|nuORF	ENST00000526607.1_2_9:102669309-102677517:+|nuORF	ENST00000526607.1_2_9:102669309-102677517:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.793212890625	2	570.776022	1139.53749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.167	1	39.167	38.667	39.667	0								0	0	0	0.38822	1	7041	7041		5.7604	1.4312	1				23904	6994	15745	15902	32443	32443					-0.026695546381915847
WCWAPDGCG	9	Unmodified	_WCWAPDGCG_					0	0	0			REV__nc|ENSG00000162066|Q9Y303-3|AMDHD2	REV__nc|ENSG00000162066|Q9Y303-3|AMDHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.6806945800781	2	497.68093	993.347308	-0.29924	-0.00014892	0.21606	0.00010753	-0.083181	-4.1398E-05	497.6809717670057	16.748	0.27431	16.748	16.642	16.916	0					69	33	3	0	0	0	0.35102	1	778	778		0	0	1	44517	+		23905	12827	15746	15903	32444	32444					-0.14963209362713314
WDCWQRLF	8	Unmodified	_WDCWQRLF_					0	0	0		ENST00000254770.2_1_7:55492999-55493095:+|nuORF	ENST00000254770.2_1_7:55492999-55493095:+|nuORF	ENST00000254770.2_1_7:55492999-55493095:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.8128051757812	2	577.266019	1152.51748	0.83457	0.00048177	1.1618	0.00067065	1.9963	0.0011524	577.2668011201763	81.328	0.74866	81.328	81.087	81.836	0					63	25	4	0	0	0	0.3576	1	19980	19980		5.7604	0	1	1285500			23906	5844	15747	15904	32445	32445					-0.05267350368831103
WDDRMHTVK	9	Unmodified	_WDDRMHTVK_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.283203125	2	594.28494	1186.55533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.724	1	59.724	59.224	60.224	0								0	0	0	0.27427	1	13272	13272		4.3292	0	1				23907	3657	15748	15905	32446	32446					-0.030488841739952477
WDELLVLL	8	Unmodified	_WDELLVLL_					0	0	0			REV__ENSG00000130812|ENST00000253109|ANGPTL6	REV__ENSG00000130812|ENST00000253109|ANGPTL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.29168701171875	2	500.789318	999.564084	0.81636	0.00040883	1.3041	0.0006531	2.1205	0.0010619	500.7905147758504	84.616	0.2359	84.616	84.529	84.765	0					18	12	2	0	0	0	0.52924	1	20866	20866		8.5933	0	1	134570	+		23908	9069	15749	15906	32447	32447					0.06428412734146605
WDIFTEEILH	10	Unmodified	_WDIFTEEILH_					0	0	0		WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant;ENSG00000166415|ENST00000360509|WDR72	WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8822326660156	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.536	1	39.624	39.124	40.124	0.088562								0	0	0	0.33959	1	7027	7027		0.69767	0.07084	1				23909	4156	15750	15907	32448	32448					-0.009546375306626942
WDLTPLILS	9	Unmodified	_WDLTPLILS_					0	0	0		RNF213|p.R4927W|1|0.5|ENSG00000173821|chr17:80386748-80386748|C/T|missense_variant	RNF213|p.R4927W|1|0.5|ENSG00000173821|chr17:80386748-80386748|C/T|missense_variant	RNF213|p.R4927W|1|0.5|ENSG00000173821|chr17:80386748-80386748|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3001708984375	2	529.30005	1056.58555	0.58079	0.00030741	-0.8205	-0.00043429	-0.23971	-0.00012688	529.2998904925149	97.564	0.58382	97.564	97.461	98.045	0					91	28	5	0	0	0	0.30005	1	24876	24876		6.7232	0	1	1069500			23910	13349	15751	15908	32449	32449					0.05951797762872957
WDNRDYSF	8	Unmodified	_WDNRDYSF_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7332153320312	2	551.733063	1101.45157	0.099786	5.5055E-05	-0.32782	-0.00018087	-0.22803	-0.00012581	551.7328658756004	106.31	0.37218	106.31	106.17	106.54	0					62	34	2	0	0	0	0.53494	1	27453	27453		4.756	0.42677	1	112650			23911	1472	15752	15909	32450	32450					-0.09509468010014643
WDSEEEWLW	9	Unmodified	_WDSEEEWLW_					0	0	0		ENST00000396037.8_1_12:22408231-22408294:-|nuORF	ENST00000396037.8_1_12:22408231-22408294:-|nuORF	ENST00000396037.8_1_12:22408231-22408294:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.26513671875	2	640.266936	1278.51932	-0.066063	-4.2298E-05	-2.3996	-0.0015364	-2.4657	-0.0015787	640.2654852644769	72.828	0.45286	72.828	72.692	73.145	0					28	15	2	0	0	0	0.25209	1	17279	17279		12.532	0	1	196510			23912	6338	15753	15910	32451	32451					-0.1088006286986456
WDSEEEWLW	9	Unmodified	_WDSEEEWLW_					0	0	0		ENST00000396037.8_1_12:22408231-22408294:-|nuORF	ENST00000396037.8_1_12:22408231-22408294:-|nuORF	ENST00000396037.8_1_12:22408231-22408294:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	640.266936	1278.51932	0.064699	4.1425E-05	-1.8847	-0.0012067	-1.82	-0.0011653	640.2657669112074	72.804	0.55183	72.857	72.656	73.208	0.052574	0.01465	0.00032031	NaN	12.532	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150280			23913	6338	15753	15910							-0.1088006286986456
WDSSNQEI	8	Unmodified	_WDSSNQEI_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.7107849121094	2	489.711796	977.40904	-0.65584	-0.00032117	-0.86148	-0.00042188	-1.5173	-0.00074305	489.71138022541874	41.712	0.7852	41.712	41.52	42.305	0					47	28	3	0	0	0	0.50815	1	7790	7790		11.64	0	1	137930	+		23914	10809	15754	15911	32452	32452					-0.08056863138244807
WDSSNQEI	8	Unmodified	_WDSSNQEI_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7107849121094	2	489.711796	977.40904	-0.48286	-0.00023646	-0.62724	-0.00030717	-1.1101	-0.00054363	489.7114234307357	41.629	0.671	41.718	41.539	42.21	0.089764					38	27	2	0	0	0	0.46914	1	7646	7646		16.942	0	1	136190	+		23915	10809	15754	15911	32453	32453					-0.08056863138244807
WDSSNQEI	8	Unmodified	_WDSSNQEI_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	489.711796	977.40904	-0.65584	-0.00032117	-0.86148	-0.00042188	-1.5173	-0.00074305	489.71138022541874	41.712	0.7852	41.712	41.52	42.305	0	-0.0029771	-0.00011736	NaN	16.942	47	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137930	+		23916	10809	15754	15911							-0.08056863138244807
WDSTPLYY	8	Unmodified	_WDSTPLYY_					0	0	0		ENSG00000114626|ENST00000232744|ABTB1;ENST00000493365.5_1_3:127391868-127394958:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF	ENSG00000114626|ENST00000232744|ABTB1	ENSG00000114626|ENST00000232744|ABTB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7822265625	2	522.737283	1043.46001	-0.043199	-2.2582E-05	1.2778	0.00066794	1.2346	0.00064536	522.7377465347802	33.563	1.0311	33.563	33.175	34.206	0					67	37	2	0	0	0	0.3576	1	5262	5262		5.7604	0	1	37918			23917	1849	15755	15912	32454	32454					-0.05997914093381951
WDSTPLYY	8	Unmodified	_WDSTPLYY_					0	0	0		ENSG00000114626|ENST00000232744|ABTB1;ENST00000493365.5_1_3:127391868-127394958:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF	ENSG00000114626|ENST00000232744|ABTB1	ENSG00000114626|ENST00000232744|ABTB1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	522.737283	1043.46001	-0.071833	-3.755E-05	1.8593	0.00097194	1.7875	0.00093439	522.738076534628	33.264	0.9253	33.339	33.191	34.116	0.074322	-0.11245	0.00036813	NaN	5.7604	66	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31959			23918	1849	15755	15912							-0.05997914093381951
WDTGYAKIHI	10	Unmodified	_WDTGYAKIHI_					0	0	0		ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF	ENST00000423527.5_1_3:31574490-31661461:+|nuORF	ENST00000423527.5_1_3:31574490-31661461:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.878173828125	3	401.876746	1202.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.738	1	28.816	28.316	29.316	0.078287								0	0	0	0.33648	1	3802	3802		2.086	0.17963	1				23919	3913	15756	15913	32455	32455					0.01520816880338316
WDWETAWCSL	10	Unmodified	_WDWETAWCSL_					0	0	0		ENST00000264712.7_1_2:26151240-26151528:-|nuORF	ENST00000264712.7_1_2:26151240-26151528:-|nuORF	ENST00000264712.7_1_2:26151240-26151528:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.7686157226562	2	648.771331	1295.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.597	1	41.597	41.097	42.097	0								0	0	0	0.33892	1	7774	7774		1.4819	0	1				23920	5889	15757	15914	32456	32456					-0.10783412505043088
WDWVAKFPS	9	Unmodified	_WDWVAKFPS_					0	0	0			REV__ENST00000473610.5_1_7:150648470-150652738:-|nuORF	REV__ENST00000473610.5_1_7:150648470-150652738:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7835693359375	2	568.282192	1134.54983	0.2424	0.00013775	1.2065	0.00068564	1.4489	0.00082339	568.2828729868497	37.255	0.35636	37.339	37.213	37.57	0.084476					16	12	2	0	0	0	0.33978	1	6338	6338		1.4819	0.79152	1	34489	+		23921	8065	15758	15915	32457	32457					-0.012062396941473708
WDWVAKFPS	9	Unmodified	_WDWVAKFPS_					0	0	0			REV__ENST00000473610.5_1_7:150648470-150652738:-|nuORF	REV__ENST00000473610.5_1_7:150648470-150652738:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.282192	1134.54983	0.2424	0.00013775	1.2065	0.00068564	1.4489	0.00082339	568.2828729868497	37.255	0.35636	37.339	37.213	37.57	0.084476	0.0090167	-0.00021595	NaN	1.4819	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34489	+		23922	8065	15758	15915							-0.012062396941473708
WDYTYVHSF	9	Unmodified	_WDYTYVHSF_					0	0	0		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.5146179199219	3	406.513585	1216.51892	0.33029	0.00013427	1.6909	0.00068737	2.0212	0.00082164	406.5143610102588	35.607	0.7938	35.607	35.361	36.155	0					66	29	4	0	0	0	0.3354	1	6017	6017		1.0715	0	1	157280			23923	5125	15759	15916	32458	32458					-0.08067437799059007
WEAEGRGT	8	Unmodified	_WEAEGRGT_					0	0	0		ENST00000481145.1_1_1:89726389-89728307:-|nuORF	ENST00000481145.1_1_1:89726389-89728307:-|nuORF	ENST00000481145.1_1_1:89726389-89728307:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2096252441406	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.794	1	84.817	84.317	85.317	0.023125								0	0	0	0.38822	1	20762	20762		0.79363	0	1				23924	6749	15760	15917	32459	32459					-0.05213122210182064
WECFMFMILH	10	Unmodified	_WECFMFMILH_					0	0	0			REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8699951171875	3	452.86944	1355.58649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.5	1	32.5	32	33	0								0	0	0	0.34005	1	5040	5040		0.15932	0	1		+		23925	12026	15761	15918	32460	32460					-0.07707770455749596
WECLKEELQ	9	Unmodified	_WECLKEELQ_					0	0	0			REV__nc|ENSG00000184178|Q8WU76-2|SCFD2	REV__nc|ENSG00000184178|Q8WU76-2|SCFD2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2805786132812	2	589.281531	1176.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.761	1	34.761	34.261	35.261	0								0	0	0	0.28807	1	5714	5714		1.4819	0	1		+		23926	10625	15762	15919	32461	32461					-0.03270241845234523
WECSLMIF	8	Unmodified	_WECSLMIF_					0	0	0			REV__nc|ENSG00000283703|P0DP72|VSIG10L2	REV__nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7323608398438	2	514.732632	1027.45071	0.55272	0.0002845	-0.16758	-8.6261E-05	0.38514	0.00019824	514.7324207250209	99.193	0.52921	99.193	98.987	99.516	0					74	35	3	0	0	0	0.53423	1	25254	25254		5.2307	0	1	454730	+		23927	11155	15763	15920	32462	32462					-0.06191721974937536
WECSLMIF	8	Unmodified	_WECSLMIF_					0	0	0			REV__nc|ENSG00000283703|P0DP72|VSIG10L2	REV__nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.732421875	2	514.732632	1027.45071	0.55743	0.00028693	-0.33006	-0.00016989	0.22737	0.00011703	514.7324575854774	99.196	0.55517	99.238	99.014	99.57	0.042839					92	38	4	0	0	0	0.52502	1	25098	25098		9.3474	0	1	727030	+		23928	11155	15763	15920	32463	32463					-0.06191721974937536
WEDAEDEP	8	Unmodified	_WEDAEDEP_					0	0	0			REV__nc|ENSG00000122367|O75112-6|LDB3	REV__nc|ENSG00000122367|O75112-6|LDB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.6878967285156	2	495.687987	989.361421	0.57735	0.00028619	-0.65459	-0.00032447	-0.077234	-3.8284E-05	495.6875940450526	81.491	0.70866	81.512	81.283	81.992	0.021866					35	25	2	0	0	0	0.54097	1	19737	19737		0.69038	0	1	244570	+		23929	8913	15764	15921	32464	32464					-0.13368562129096517
WEDIFSGDF	9	Unmodified	_WEDIFSGDF_					0	0	0		ENST00000439871.1_1_2:218925948-218930359:-|nuORF	ENST00000439871.1_1_2:218925948-218930359:-|nuORF	ENST00000439871.1_1_2:218925948-218930359:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7302856445312	2	558.237647	1114.46074	0.70421	0.00039312	-4.1329	-0.0023072	-3.4287	-0.001914	558.2342677082403	93.099	0.50761	93.099	92.851	93.358	0					53	19	4	0	0	0	0.21398	1	23491	23491		16.942	3.4344	1	173250			23930	6520	15765	15922	32465	32465					-0.09191119444335527
WEDIFSGDF	9	Unmodified	_WEDIFSGDF_					0	0	0		ENST00000439871.1_1_2:218925948-218930359:-|nuORF	ENST00000439871.1_1_2:218925948-218930359:-|nuORF	ENST00000439871.1_1_2:218925948-218930359:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7304077148438	2	558.237647	1114.46074	0.71709	0.00040031	-3.6784	-0.0020534	-2.9613	-0.0016531	558.2343510605914	93.046	0.55291	93.084	92.837	93.39	0.037369					70	23	4	0	0	0	0.21398	1	23316	23316		16.942	3.4344	1	186860			23931	6520	15765	15922	32466	32466					-0.09191119444335527
WEDPVEWV	8	Unmodified	_WEDPVEWV_					0	0	0		nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1	nc|ENSG00000134369|Q8NEY1-5|NAV1	nc|ENSG00000134369|Q8NEY1-5|NAV1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.2421264648438	2	530.242732	1058.47091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.445	1	19.54	19.04	20.04	0.095232								0	0	0	0.38822	1	1281	1281		0.69038	0	1				23932	2664	15766	15923	32467	32467					-0.05598511719108501
WEDYRLTWK	9	Unmodified	_WEDYRLTWK_					0	0	0		ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.88519287109375	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.01	1	103.05	102.55	103.55	0.040916								0	0	0	0.29424	1	26296	26296		0.20686	0.047535	1				23933	3773	15767	15924	32468	32468					-0.006117980909721155
WEEYQDYR	8	Unmodified	_WEEYQDYR_					0	0	0			REV__tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	REV__tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.2686767578125	2	594.751453	1187.48835	0.43585	0.00025922	1.5467	0.0009199	1.9825	0.0011791	594.752554944894	70.77	0.32904	70.77	70.583	70.912	0					25	11	3	0	0	0	0.3576	1	16631	16631		5.2307	0.90143	1	113260	+		23934	13299	15768	15925	32469	32469					-0.09789216184094585
WEFVNATF	8	Unmodified	_WEFVNATF_					0	0	0		nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.76751708984375	2	507.239993	1012.46543	0.0089932	4.5617E-06	0.57457	0.00029145	0.58357	0.00029601	507.2402695643412	73.582	0.30605	73.582	73.464	73.77	0					11	10	2	0	0	0	0.35759	1	17489	17489		13.906	0	1	96307			23935	1096	15769	15926	32470	32470					-0.0403019051091178
WEKMVKKVSRF	11	Unmodified	_WEKMVKKVSRF_					0	0	0		ENSG00000239305|ENST00000237455|RNF103;ENST00000463333.6_1_2:86831591-86842310:-|nuORF	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.9390563964844	3	479.939352	1436.79623	-0.05449	-2.6152E-05	-0.49727	-0.00023866	-0.55176	-0.00026481	479.93918132950785	14.619	0.40314	14.687	14.571	14.974	0.067592					59	53	2	0	0	0	0.4185	1	387	387		0.094841	0	1	18529			23936	5638	15770	15927	32471	32471					0.09529931813221992
WEKRFFIL	8	Unmodified	_WEKRFFIL_					0	0	0		ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2|C10orf67	ENSG00000179133|ENST00000636213|C10orf67	ENSG00000179133|ENST00000636213|C10orf67	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2916259765625	2	569.824027	1137.6335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.426	1	24.426	23.926	24.926	0								0	0	0	0.38822	1	2681	2681		0.79363	0	1				23937	4767	15771	15928	32472	32472					0.07018916473566605
WEKRHVLF	8	Unmodified	_WEKRHVLF_					0	0	0		ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19	ENSG00000146955|ENST00000537763|RAB19	ENSG00000146955|ENST00000537763|RAB19	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3248901367188	2	557.811451	1113.60835	0.53263	0.00029711	-0.031811	-1.7744E-05	0.50082	0.00027936	558.3101977881968	94.373	0.12943	94.411	94.37	94.5	0.038086					6	4	2	0	0	0	0.53257	1	23682	23682		6.3541	0.14832	1	14621			23938	3306	15772	15929	32473	32473					0.056088616709757844
WELFVKYY	8	Unmodified	_WELFVKYY_					0	0	0		nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1	nc|ENSG00000198863|Q96C34-2|RUNDC1	nc|ENSG00000198863|Q96C34-2|RUNDC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.293701171875	2	574.294768	1146.57498	0.28129	0.00016154	-1.7276	-0.00099216	-1.4463	-0.00083062	574.2938704271409	106.56	0.47636	106.58	106.3	106.78	0.025711					71	50	2	0	0	0	0.3576	1	27314	27314		0.69038	0	1	120550			23939	5423	15773	15930	32474	32474					0.007558151084140263
WELPFPCP	8	Unmodified	_WELPFPCP_					0	0	0		ENSG00000114626|ENST00000232744|ABTB1;ABTB1|p.F268L|1|0.19|ENSG00000114626|chr3:127677506-127677506|C/G|missense_variant;nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1	ENSG00000114626|ENST00000232744|ABTB1	ENSG00000114626|ENST00000232744|ABTB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.2076416015625	2	494.733489	987.452425	0.13377	6.618E-05	-1.3991	-0.00069217	-1.2653	-0.00062599	494.733001592019	39.608	0.23081	39.608	39.518	39.748	0					12	7	2	0	0	0	0.3576	1	7167	7167		2.5775	0.27475	1	20129			23940	1849	15774	15931	32475	32475					-0.041803448946552635
WELPLQDEPL	10	Unmodified	_WELPLQDEPL_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3167114257812	2	620.316428	1238.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.413	1	86.413	85.913	86.913	0								0	0	0	0.29381	1	21415	21415		18.373	4.7582	1				23941	5418	15775	15932	32476	32476					0.008539600950371096
WELPLQDEPL	10	Unmodified	_WELPLQDEPL_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3165283203125	2	620.316428	1238.6183	0.037136	2.3036E-05	0.12986	8.0556E-05	0.167	0.00010359	620.3166922212508	86.31	0.34293	86.336	86.138	86.481	0.025169					18	12	2	0	0	0	0.44938	1	21265	21265		4.897	1.9018	1	71592			23942	5418	15775	15932	32477	32477					0.008539600950371096
WEMAQPVSMS	10	Unmodified	_WEMAQPVSMS_					0	0	0			REV__ENST00000465873.5_1_9:138834060-138837107:-|nuORF	REV__ENST00000465873.5_1_9:138834060-138837107:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.769775390625	2	583.254459	1164.49437	0.40673	0.00023723	2.7941	0.0016297	3.2008	0.0018669	583.7577626421593	56.368	0.32665	56.368	56.3	56.627	0					14	11	2	0	0	0	0.31456	1	12332	12332		14.838	1.7958	1	135820	+		23943	11994	15776	15933	32478	32478					-0.0813015726841968
WEPHCPAIP	9	Unmodified	_WEPHCPAIP_					0	0	0		ENST00000216068.8_1_22:39175031-39175319:-|nuORF	ENST00000216068.8_1_22:39175031-39175319:-|nuORF	ENST00000216068.8_1_22:39175031-39175319:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2466430664062	2	525.247295	1048.48004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.375	1	23.477	22.977	23.977	0.10178								0	0	0	0.28527	1	2273	2273		2.0598	0	1				23944	5790	15777	15934	32479	32479					-0.04226441634409639
WEQKATVI	8	Unmodified	_WEQKATVI_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.76898193359375	2	487.768917	973.523281	0.26361	0.00012858	-0.071731	-3.4988E-05	0.19188	9.3594E-05	487.76878415929724	68.393	0.61732	68.393	68.158	68.775	0					48	21	3	0	0	0	0.37119	1	15906	15906		29.082	0	1	257860			23945	903	15778	15935	32480	32480					0.035460714145074235
WERAHSQQV	9	Unmodified	_WERAHSQQV_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7805786132812	2	570.780879	1139.5472	0.11857	6.768E-05	-0.42492	-0.00024254	-0.30635	-0.00017486	570.7805889399638	35.348	0.45885	35.427	35.302	35.761	0.078827					34	17	3	0	0	0	0.32831	1	5815	5815		2.9952	1.151	1	67032			23946	4831	15779	15936	32481	32481					-0.01698695099116776
WERNKKAGG	9	Unmodified	_WERNKKAGG_					0	0	0			REV__tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	REV__tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7957153320312	2	523.280515	1044.54648	0.48183	0.00025213	3.0201	0.0015804	3.5019	0.0018325	523.2821056391482	55.459	0.57257	55.459	55.293	55.866	0					25	19	2	0	0	0	0.21603	1	11951	11951		20.454	2.3186	1	97625	+		23947	13308	15780	15937	32482	32482					0.025985102518461645
WETERRKLF	9	Unmodified	_WETERRKLF_					0	0	0		ENST00000550858.1_1_12:42681476-42682067:+|nuORF	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.877197265625	3	422.231412	1263.67241	0.0074437	3.143E-06	-0.8151	-0.00034416	-0.80766	-0.00034102	422.2310541928928	49.445	0.32042	49.522	49.428	49.749	0.076607					18	10	2	0	0	0	0.25952	1	10077	10077		1.1933	0	1	82674			23948	7098	15781	15938	32483	32483					0.05111597037262072
WEVIRSETF	9	Unmodified	_WEVIRSETF_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.7966918945312	2	583.795663	1165.57677	0.72648	0.00042412	0.7352	0.00042921	1.4617	0.00085332	583.7960707645427	102.14	0.62098	102.18	101.9	102.52	0.042656					88	48	3	0	0	0	0.28919	1	26042	26042		8.1555	2.4237	1	200550	+		23949	9422	15782	15939	32484	32484					0.000608241263535092
WEYIDQEC	8	Unmodified	_WEYIDQEC_					0	0	0			REV__nc|ENSG00000135363|P25791|LMO2	REV__nc|ENSG00000135363|P25791|LMO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7850952148438	2	543.215857	1084.41716	0.19977	0.00010852	3.4269	0.0018615	3.6266	0.0019701	543.2177782053491	50.989	0.39332	50.989	50.731	51.124	0					22	12	2	0	0	0	0.3576	1	10624	10624		5.2307	0.90143	1	91993	+		23950	9201	15783	15940	32485	32485					-0.12167052213135321
WFDDTFSL	8	Unmodified	_WFDDTFSL_					0	0	0			REV__ENST00000322716.7_1_3:37028664-37028739:-|nuORF	REV__ENST00000322716.7_1_3:37028664-37028739:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7289428710938	2	515.729458	1029.44436	0.31602	0.00016298	-1.2782	-0.00065923	-0.96222	-0.00049625	515.729020081723	37.156	0.9486	37.156	36.751	37.7	0					65	35	2	0	0	0	0.53858	1	6339	6339		2.3027	0	1	65354	+		23951	11401	15784	15941	32486	32486					-0.06918200610448366
WFDHVNLF	8	Unmodified	_WFDHVNLF_					0	0	0		ENST00000430246.6_1_14:21730999-21731299:-|nuORF	ENST00000430246.6_1_14:21730999-21731299:-|nuORF	ENST00000430246.6_1_14:21730999-21731299:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.2684936523438	2	539.261259	1076.50797	0.51064	0.00027537	-1.4992	-0.00080847	-0.98857	-0.0005331	539.7623388285515	75.13	0.23791	75.13	74.961	75.199	0					13	8	2	0	0	0	0.34292	1	17927	17927		24.674	2.2213	1	436000			23952	6485	15785	15942	32487	32487					-0.02722795382669574
WFDPAIFTI	9	Unmodified	_WFDPAIFTI_					0	0	0		ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2870483398438	2	555.286943	1108.55933	0.54693	0.0003037	-0.166	-9.2179E-05	0.38093	0.00021153	555.2867964224724	100.72	0.82805	100.72	100.53	101.36	0					103	48	3	0	0	0	0.01943	2	25772	25772;25810		58.679	30.184	1	537920			23953	3932	15786	15943	32488;32489	32488					0.009395285913797125
WFDPAIFTI	9	Unmodified	_WFDPAIFTI_					0	0	0		ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2870483398438	2	555.286943	1108.55933	0.71764	0.0003985	-0.49111	-0.00027271	0.22653	0.00012579	555.2865554414989	100.67	0.70591	100.71	100.52	101.23	0.042831					95	43	3	0	0	0	0.0097093	3	25610	25569;25610;25649		68.081	39.586	1	360340			23954	3932	15786	15943	32490;32491;32492	32491					0.009395285913797125
WFDPTTSQL	9	Unmodified	_WFDPTTSQL_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.760009765625	2	547.761289	1093.50803	0.58429	0.00032005	-4.3476	-0.0023815	-3.7633	-0.0020614	547.7588637528221	64.432	1.603	64.432	63.946	65.549	0					130	57	4	0	0	0	0.036979	1	14744	14744		56.177	17.562	1	883590	+		23955	8079	15787	15944	32493	32493					-0.03498840173347162
WFDPTTSQL	9	Unmodified	_WFDPTTSQL_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7601928710938	2	547.761289	1093.50803	0.49639	0.0002719	-4.3567	-0.0023865	-3.8603	-0.0021145	547.7588731854735	64.395	1.3036	64.465	63.885	65.188	0.069405					122	47	4	0	0	0	0.01063	1	14605	14605		65.235	26.62	1	819930	+		23956	8079	15787	15944	32494	32494					-0.03498840173347162
WFDPTTSQL	9	Unmodified	_WFDPTTSQL_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2899169921875	2	547.761289	1093.50803	0.49639	0.0002719	-4.3567	-0.0023865	-3.8603	-0.0021145	547.7588731854735	64.395	1.3036	64.465	63.885	65.188	0.069405					122	47	4	0	0	0	0.036979	1	14503	14503		65.235	19.495	1	819930	+		23957	8079	15787	15944	32495	32495					-0.03498840173347162
WFEWKIAFE	9	Unmodified	_WFEWKIAFE_					0	0	0			REV__ENST00000376723.7_1_2:128849017-128855062:+|nuORF	REV__ENST00000376723.7_1_2:128849017-128855062:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.7799072265625	2	628.310949	1254.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.055	1	58.055	57.555	58.555	0								0	0	0	0.28631	1	12769	12769		1.8442	0.36234	1		+		23958	11644	15788	15945	32496	32496					-0.009773974885547432
WFFLFGHR	8	Unmodified	_WFFLFGHR_					0	0	0			REV__ENST00000250916.5_1_19:1853189-1853714:-|nuORF	REV__ENST00000250916.5_1_19:1853189-1853714:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.288818359375	2	555.287611	1108.56067	-0.23355	-0.00012969	1.5795	0.00087708	1.3459	0.00074739	555.2885780908593	15.797	0.16543	15.797	15.719	15.884	0					34	20	2	0	0	0	0.54081	1	605	605		0.79363	0	1	17396	+		23959	11210	15789	15946	32497	32497					0.010732074707902939
WFGDSFEPIL	10	Unmodified	_WFGDSFEPIL_					0	0	0			REV__ENST00000463674.5_1_21:42613685-42647548:+|nuORF	REV__ENST00000463674.5_1_21:42613685-42647548:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.7923583984375	2	605.792589	1209.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.96	1	45.96	45.46	46.46	0								0	0	0	0.33711	1	9093	9093		3.5965	0	1		+		23960	10557	15790	15947	32498	32498					-0.025776941051390168
WFGFLHVEKC	10	Unmodified	_WFGFLHVEKC_					0	0	0			REV__ST8SIA5|p.E314K|1|0.14|ENSG00000101638|chr18:46680233-46680233|C/T|missense_variant	REV__ST8SIA5|p.E314K|1|0.14|ENSG00000101638|chr18:46680233-46680233|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.828369140625	2	633.310426	1264.6063	0.17603	0.00011148	1.9333	0.0012244	2.1093	0.0013359	633.3114783500865	60.15	0.50547	60.222	60.044	60.55	0.072338					23	17	2	0	0	0	0.31818	1	13320	13320		2.7352	0.23671	1	107750	+		23961	13008	15791	15948	32499	32499					-0.015419351291484418
WFGLLLFLF	9	Unmodified	_WFGLLLFLF_					0	0	0			REV__ENST00000359320.7_1_14:23846361-23846430:+|nuORF	REV__ENST00000359320.7_1_14:23846361-23846430:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.8128051757812	2	578.333696	1154.65284	0.7352	0.00042519	-2.159	-0.0012486	-1.4238	-0.00082342	578.3322318350616	82.021	0.93658	82.021	81.489	82.426	0					64	32	3	0	0	0	0.237	1	19980	19980		14.582	0	1	183970	+		23962	11528	15792	15949	32500	32500					0.08169872764460706
WFLLSALF	8	Unmodified	_WFLLSALF_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7817687988281	2	498.781296	995.54804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.993	1	78.993	78.493	79.493	0								0	0	0	0.38822	1	19156	19156		10.183	0	1		+		23963	10975	15793	15950	32501	32501					0.05008751287903124
WFLLSALF	8	Unmodified	_WFLLSALF_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7811584472656	2	498.781296	995.54804	0.45832	0.0002286	0.7198	0.00035902	1.1781	0.00058762	498.7815911115927	78.58	0.42628	78.611	78.225	78.651	0.030159					20	14	2	0	0	0	0.53345	1	18825	18825		5.7604	2.8712	1	226270	+		23964	10975	15793	15950	32502	32502					0.05008751287903124
WFRPAPPSW	9	Unmodified	_WFRPAPPSW_					0	0	0		ENST00000357166.10_1_X:128975958-128977712:-|nuORF	ENST00000357166.10_1_X:128975958-128977712:-|nuORF	ENST00000357166.10_1_X:128975958-128977712:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7942504882812	2	572.290351	1142.56615	0.49369	0.00028253	0.26989	0.00015445	0.76358	0.00043699	572.7931347119305	55.296	0.39973	55.361	55.032	55.432	0.065128					27	15	2	0	0	0	0.30005	1	11797	11797		6.7232	0	1	54517			23965	6128	15794	15951	32503	32503					0.0005688626260962337
WFRVLARGRI	10	Unmodified	_WFRVLARGRI_					0	0	0			REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3859252929688	2	637.385648	1272.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.62	1	116.62	116.12	117.12	0								0	0	0	0.34018	1	29668	29668		0	0	1		+		23966	13096	15795	15952	32504	32504					0.13127592644718789
WFVAICHPL	9	Unmodified	_WFVAICHPL_					0	0	0		OR7D4|p.R122W|1|0.26|ENSG00000174667|chr19:9214474-9214474|G/A|missense_variant	OR7D4|p.R122W|1|0.26|ENSG00000174667|chr19:9214474-9214474|G/A|missense_variant	OR7D4|p.R122W|1|0.26|ENSG00000174667|chr19:9214474-9214474|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.28515625	2	543.28368	1084.55281	0.038704	2.1028E-05	-1.1836	-0.00064301	-1.1448	-0.00062198	543.2830034235177	33.178	0.31153	33.252	33.089	33.401	0.074322					15	12	2	0	0	0	0.33356	1	5126	5126		2.3027	0	1	18089			23967	7658	15796	15953	32505	32505					0.013913121590121591
WFVYHIIY	8	Unmodified	_WFVYHIIY_					0	0	0		ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7944946289062	2	570.797478	1139.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.352	1	32.426	31.926	32.926	0.07378								0	0	0	0.38822	1	4875	4875		0.79363	0.19213	1				23968	5928	15797	15954	32506	32506					0.01619538690920308
WFWESGFSP	9	Unmodified	_WFWESGFSP_					0	0	0			REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2	REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7509765625	2	571.750724	1141.4869	0.046387	2.6522E-05	1.1365	0.00064979	1.1829	0.00067632	571.7513552696274	21.534	0.34652	21.636	21.499	21.846	0.10178					60	35	2	0	0	0	0.34704	1	1791	1791		0.52476	0	1	27881	+		23969	7917	15798	15955	32507	32507					-0.07818805482202151
WGATHHRCRE	10	Unmodified	_WGATHHRCRE_					0	0	0			REV__NTN5|p.R249W|1|0.26|ENSG00000142233|chr19:48664654-48664654|G/A|missense_variant	REV__NTN5|p.R249W|1|0.26|ENSG00000142233|chr19:48664654-48664654|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	626.791259765625	2	626.791255	1251.56796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.562	1	28.562	28.062	29.062	0								0	0	0	0.34018	1	3875	3875		0	0	1		+		23970	12936	15799	15956	32508	32508					-0.047764279910779806
WGCWSSWST	9	Unmodified	_WGCWSSWST_					0	0	0		ENSG00000039537|ENST00000337836|C6	ENSG00000039537|ENST00000337836|C6	ENSG00000039537|ENST00000337836|C6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.217041015625	2	550.218734	1098.42292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.92	114.42	115.42	0								0	0	0	0.29233	1	29328	29328		0.6015	0.14316	1				23971	533	15800	15957	32509	32509					-0.12235908910770377
WGFHDRCFF	9	Unmodified	_WGFHDRCFF_					0	0	0			REV__ENSG00000163659|ENST00000295924|TIPARP	REV__ENSG00000163659|ENST00000295924|TIPARP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7999877929688	2	607.763643	1213.51273	0.70635	0.00042929	-2.4893	-0.0015129	-1.783	-0.0010836	608.7671669726083	63.912	0.34356	63.983	63.859	64.202	0.071018					27	11	4	0	0	0	0.25699	1	14458	14458		3.5965	0.31518	1	176510	+		23972	9951	15801	15958	32510	32510					-0.08548234511567898
WGGGEPGF	8	Unmodified	_WGGGEPGF_					0	0	0		ENST00000405308.6_2_11:46402334-46402400:+|nuORF	ENST00000405308.6_2_11:46402334-46402400:+|nuORF	ENST00000405308.6_2_11:46402334-46402400:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	403.6768493652344	2	403.677028	805.339503	0.29207	0.0001179	-0.37917	-0.00015306	-0.087103	-3.5162E-05	403.6768913577865	35.077	0.59478	35.077	34.884	35.479	0					33	20	2	0	0	0	0.53345	1	5798	5798		5.7604	3.4577	1	46156			23973	6375	15802	15959	32511	32511					-0.07095277296321001
WGGSPGSWLSE	11	Unmodified	_WGGSPGSWLSE_					0	0	0		ENST00000466883.5_1_7:65439694-65439883:-|nuORF	ENST00000466883.5_1_7:65439694-65439883:-|nuORF	ENST00000466883.5_1_7:65439694-65439883:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2620849609375	2	581.76182	1161.50909	0.68812	0.00040032	-2.8341	-0.0016488	-2.146	-0.0012485	582.2618506432431	100.95	0.19884	100.99	100.85	101.05	0.042831					16	12	2	0	0	0	0.40693	1	25669	25669		2.7352	2.2104	1	41029			23974	6642	15803	15960	32512	32512					-0.06520625804432711
WGIPVNCDE	9	Unmodified	_WGIPVNCDE_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.2777709960938	2	516.726392	1031.43823	0.13834	7.1483E-05	2.5386	0.0013118	2.677	0.0013833	516.7275460684248	35.169	0.56322	35.169	34.854	35.417	0					47	19	3	0	0	0	0.25809	1	5907	5907		2.3027	0.24298	1	59491			23975	4677	15804	15961	32513	32513					-0.07623042113618794
WGKKGYLLW	9	Unmodified	_WGKKGYLLW_					0	0	0		ENST00000373857.7_1_1:28476271-28476457:-|nuORF	ENST00000373857.7_1_1:28476271-28476457:-|nuORF	ENST00000373857.7_1_1:28476271-28476457:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7923583984375	2	575.824027	1149.6335	0.45298	0.00026084	2.8946	0.0016668	3.3476	0.0019276	575.8258111469777	78.285	0.47707	78.315	78.138	78.615	0.030159					25	16	2	0	0	0	0.23598	1	18793	18793		15.847	3.3156	1	137920			23976	6228	15805	15962	32514	32514					0.06466916473573292
WGKRFCVWR	9	Unmodified	_WGKRFCVWR_					0	0	0			REV__ENST00000264193.2_1_3:98309863-98309983:-|nuORF	REV__ENST00000264193.2_1_3:98309863-98309983:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3244018554688	2	619.324202	1236.63385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.053	1	37.136	36.636	37.636	0.083244								0	0	0	0.29525	1	6280	6280		0	0	1		+		23977	11251	15806	15963	32515	32515					0.025000129217687572
WGKRRRRKRRR	11	Unmodified	_WGKRRRRKRRR_					0	0	0		ENST00000235372.11_1_1:14105080-14105206:+|nuORF	ENST00000235372.11_1_1:14105080-14105206:+|nuORF	ENST00000235372.11_1_1:14105080-14105206:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7647094726562	3	537.676958	1610.00904	0.47896	0.00025753	-2.408	-0.0012947	-1.929	-0.0010372	537.6755237924755	51.467	0.10521	51.537	51.451	51.556	0.069874					5	3	2	0	0	0	0.31101	1	10613	10613		0.08335	0.08335	1	45663			23978	5820	15807	15964	32516	32516					0.22844043498594147
WGLRSYHET	9	Unmodified	_WGLRSYHET_					0	0	0		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO;ENST00000475183.1_1_X:54953428-54957230:+|nuORF;ENST00000494718.5_1_X:51643260-51645023:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000067445|Q12816-2|TRO;ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7754516601562	2	574.777805	1147.54106	-0.27726	-0.00015936	-1.3115	-0.0007538	-1.5887	-0.00091316	574.7769375683928	22.377	0.25615	22.377	22.246	22.502	0					24	16	2	0	0	0	0.34646	1	2133	2133		0.6015	0	1	15251			23979	4768;715	15808	15965	32517	32517					-0.026812133306293617
WGLWAFYL	8	Unmodified	_WGLWAFYL_					0	0	0			REV__ENST00000529242.1_1_11:26563580-26584615:+|nuORF	REV__ENST00000529242.1_1_11:26563580-26584615:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.27099609375	2	528.271096	1054.52764	0.42307	0.00022349	-0.20536	-0.00010849	0.21771	0.00011501	528.2706988588659	101.61	0.38337	101.65	101.46	101.85	0.042656					58	29	3	0	0	0	0.53771	1	25904	25904		2.8892	0.31174	1	295870	+		23980	9173	15809	15966	32518	32518					0.002555806280724937
WGPFCPVL	8	Unmodified	_WGPFCPVL_					0	0	0			REV__ENST00000545022.5_1_12:121970787-121972525:-|nuORF	REV__ENST00000545022.5_1_12:121970787-121972525:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.7297668457031	2	459.730749	917.446945	0.054909	2.5243E-05	-1.7925	-0.00082406	-1.7376	-0.00079882	459.72970830447605	33.43	0.65453	33.43	33.2	33.854	0					46	23	3	0	0	0	0.51202	1	5301	5301		11.114	1.767	1	119620	+		23981	12411	15810	15967	32519	32519					-0.015080236864719154
WGPHHALIL	9	Unmodified	_WGPHHALIL_					0	0	0		ENSG00000128310|ENST00000249041|GALR3	ENSG00000128310|ENST00000249041|GALR3	ENSG00000128310|ENST00000249041|GALR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7540283203125	2	522.292894	1042.57123	-0.10451	-5.4584E-05	-4.3969	-0.0022965	-4.5014	-0.0023511	522.290451356231	58.833	0.30969	58.833	58.621	58.931	0					16	10	2	0	0	0	0.24749	1	12954	12954		9.3474	0.75416	1	150360			23982	2393	15811	15968	32520	32520					0.05165190125217123
WGRGGKGAL	9	Unmodified	_WGRGGKGAL_					0	0	0			REV__ENST00000494593.1_1_11:67351648-67351816:+|nuORF	REV__ENST00000494593.1_1_11:67351648-67351816:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.2403259277344	2	451.253769	900.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.499	1	40.589	40.089	41.089	0.089645								0	0	0	0.28527	1	7316	7316		2.0598	0	1		+		23983	12173	15812	15969	32521	32521					0.03875757539992719
WGRGGRHL	8	Unmodified	_WGRGGRHL_					0	0	0		ENST00000471582.5_1_20:61956720-61961007:+|nuORF;ENST00000479501.5_1_20:61950534-61961007:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1	ENST00000471582.5_1_20:61956720-61961007:+|nuORF	ENST00000471582.5_1_20:61956720-61961007:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	469.7554016113281	2	469.75701	937.499467	0.20627	9.6897E-05	-1.5594	-0.00073252	-1.3531	-0.00063563	469.75605700027245	38.269	0.23242	38.269	38.129	38.362	0					11	7	2	0	0	0	0.54097	1	6794	6794		0.69038	0	1	22547			23984	1242	15813	15970	32522	32522					0.02821695491365972
WGWEWRRK	8	Unmodified	_WGWEWRRK_					0	0	0			REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87786865234375	3	401.877192	1202.60975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.139	1	22.139	21.639	22.639	0								0	0	0	0.38822	1	2044	2044		0.40072	0.16487	1		+		23985	11947	15814	15971	32523	32523					0.0165449575972616
WGWGTRSRK	9	Unmodified	_WGWGTRSRK_					0	0	0		ENST00000435930.1_1_9:139730112-139730415:+|nuORF	ENST00000435930.1_1_9:139730112-139730415:+|nuORF	ENST00000435930.1_1_9:139730112-139730415:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7927856445312	2	567.301781	1132.58901	0.31705	0.00017986	-3.761	-0.0021336	-3.4439	-0.0019537	567.7998051576615	47.188	0.40491	47.188	46.967	47.372	0					17	13	2	0	0	0	0.25875	1	9401	9401		1.8442	0.19162	1	32334			23986	6505	15815	15972	32524	32524					0.02801905380079006
WGWGTRSRK	9	Unmodified	_WGWGTRSRK_					0	0	0		ENST00000435930.1_1_9:139730112-139730415:+|nuORF	ENST00000435930.1_1_9:139730112-139730415:+|nuORF	ENST00000435930.1_1_9:139730112-139730415:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	567.301781	1132.58901	0.30132	0.00017094	-2.5389	-0.0014403	-2.2376	-0.0012694	567.801797668021	47.094	0.21132	47.177	47.032	47.244	0.083096	-0.0056236	0.00035622	NaN	1.8442	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25346			23987	6505	15815	15972							0.02801905380079006
WGWRISIC	8	Unmodified	_WGWRISIC_					0	0	0		ENST00000531065.5_1_16:2014195-2014626:-|nuORF	ENST00000531065.5_1_16:2014195-2014626:-|nuORF	ENST00000531065.5_1_16:2014195-2014626:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7590637207031	2	510.75783	1019.50111	-0.025695	-1.3124E-05	2.6482	0.0013526	2.6225	0.0013395	510.75923449030995	33.895	0.36998	33.895	33.688	34.058	0					30	13	3	0	0	0	0.50159	1	5443	5443		12.532	0.89125	1	45550			23988	7025	15816	15973	32525	32525					-0.007864315348911077
WHCLRRED	8	Unmodified	_WHCLRRED_					0	0	0		nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-3|FHIP1B	nc|ENSG00000051009|Q8N612-3|FHIP1B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7638549804688	2	557.764175	1113.5138	0.14318	7.9862E-05	-1.312	-0.0007318	-1.1688	-0.00065194	557.7634312900962	31.717	0.29194	31.791	31.634	31.926	0.073782					23	13	2	0	0	0	0.54081	1	4724	4724		0.79363	0.10326	1	35695			23989	585	15817	15974	32526	32526					-0.03842020142633373
WHDLWDPFRR	10	Unmodified	_WHDLWDPFRR_					0	0	0			REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.1983642578125	3	476.570427	1426.68945	-0.3775	-0.0001799	-1.6053	-0.00076503	-1.9828	-0.00094493	476.56974733955246	31.322	0.35953	31.322	31.133	31.492	0					26	17	2	0	0	0	0.31856	1	4677	4677		0.15932	0	1	13559	+		23990	9008	15818	15975	32527	32527					-0.0068248235695591575
WHFFFCPK	8	Unmodified	_WHFFFCPK_					0	0	0			REV__ENSG00000007933|ENST00000367755|FMO3	REV__ENSG00000007933|ENST00000367755|FMO3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.925048828125	2	556.262748	1110.51094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.02	1	27.107	26.607	27.607	0.0867								0	0	0	0.38822	1	3299	3299		0	0	1		+		23991	7957	15819	15976	32528	32528					-0.039892435295087125
WHGKEQGQSF	10	Unmodified	_WHGKEQGQSF_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.280029296875	2	602.280712	1202.54687	-0.074163	-4.4667E-05	-0.40715	-0.00024522	-0.48131	-0.00028989	602.2804510704166	24.988	0.33343	24.988	24.877	25.211	0					39	25	2	0	0	0	0.47288	1	2867	2867		0.45834	0.057624	1	25416	+		23992	10074	15820	15977	32529	32529					-0.04630114818974107
WHGLHPGYY	9	Unmodified	_WHGLHPGYY_					0	0	0		nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7;ENST00000494142.1_1_19:54677740-54682918:-|nuORF	nc|ENSG00000125505|Q96N66-2|MBOAT7	nc|ENSG00000125505|Q96N66-2|MBOAT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2631225585938	2	565.264333	1128.51411	0.1081	6.1106E-05	-1.7696	-0.0010003	-1.6615	-0.00093917	565.2634179149891	39.395	0.44674	39.484	39.341	39.788	0.088562					21	17	2	0	0	0	0.34646	1	7041	7041		0.6015	0	1	47493			23993	2295	15821	15978	32530	32530					-0.0450027715116903
WHIPHSWESW	10	Unmodified	_WHIPHSWESW_					0	0	0			REV__ENST00000512747.3_1_X:70328447-70329231:-|nuORF	REV__ENST00000512747.3_1_X:70328447-70329231:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.900634765625	3	455.543878	1363.60981	-0.077003	-3.5078E-05	0.042873	1.953E-05	-0.03413	-1.5548E-05	455.54432779490645	23.136	0.27156	23.238	23.093	23.365	0.10178					42	27	2	0	0	0	0.31856	1	2200	2200		0.15932	0	1	25704	+		23994	9563	15822	15979	32531	32531					-0.057455490309166635
WHLGMLGDE	9	Unmodified	_WHLGMLGDE_					0	0	0			REV__ENST00000375353.4_1_13:114519114-114519489:+|nuORF	REV__ENST00000375353.4_1_13:114519114-114519489:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2510375976562	2	529.242209	1056.46987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.946	1	42.946	42.446	43.446	0								0	0	0	0.25692	1	8182	8182		7.9102	0.62092	1		+		23995	11634	15823	15980	32532	32532					-0.05611049359640674
WHLSIRWKL	9	Unmodified	_WHLSIRWKL_					0	0	0		ENST00000311177.6_1_17:46698590-46699007:-|nuORF	ENST00000311177.6_1_17:46698590-46699007:-|nuORF	ENST00000311177.6_1_17:46698590-46699007:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8641967773438	2	619.861475	1237.7084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.76	1	104.76	104.26	105.26	0								0	0	0	0.28527	1	26968	26968		2.0598	0	1				23996	6000	15824	15981	32533	32533					0.09905099004799922
WHMRKKPR	8	Unmodified	_WHMRKKPR_					0	0	0		ENST00000243643.8_1_19:53619685-53636133:-|nuORF;ENST00000600120.5_1_19:53619685-53636050:-|nuORF	ENST00000243643.8_1_19:53619685-53636133:-|nuORF	ENST00000243643.8_1_19:53619685-53636133:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.8245849609375	2	569.824369	1137.63419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.747	1	17.747	17.247	18.247	0								0	0	0	0.38822	1	983	983		0	0	1				23997	5828	15825	15982	32534	32534					0.07087432641628766
WHMRKKPR	8	Unmodified	_WHMRKKPR_					0	0	0		ENST00000243643.8_1_19:53619685-53636133:-|nuORF;ENST00000600120.5_1_19:53619685-53636050:-|nuORF	ENST00000243643.8_1_19:53619685-53636133:-|nuORF	ENST00000243643.8_1_19:53619685-53636133:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8251342773438	2	569.824369	1137.63419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.269	1	17.353	16.853	17.853	0.083696								0	0	0	0.38822	1	818	818		0	0	1				23998	5828	15825	15982	32535	32535					0.07087432641628766
WHMRKKPR	8	Unmodified	_WHMRKKPR_					0	0	0		ENST00000243643.8_1_19:53619685-53636133:-|nuORF;ENST00000600120.5_1_19:53619685-53636050:-|nuORF	ENST00000243643.8_1_19:53619685-53636133:-|nuORF	ENST00000243643.8_1_19:53619685-53636133:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8244018554688	2	569.824369	1137.63419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.806	1	22.908	22.408	23.408	0.10178								0	0	0	0.38822	1	2121	2121		0	0	1				23999	5828	15825	15982	32536	32536					0.07087432641628766
WHPHAHVL	8	Unmodified	_WHPHAHVL_					0	0	0			REV__nc|ENSG00000011451|O95785|WIZ	REV__nc|ENSG00000011451|O95785|WIZ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7633361816406	2	498.761761	995.508969	0.48759	0.00024319	1.676	0.0008359	2.1635	0.0010791	498.7625330739285	47.28	0.49606	47.28	47.144	47.64	0					25	16	2	0	0	0	0.53257	1	9498	9498		6.3541	1.1234	1	128940	+		24000	7982	15826	15983	32537	32537					0.01103463776883018
WHPPHQGL	8	Unmodified	_WHPPHQGL_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.24676513671875	2	486.245944	970.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.794	1	67.858	67.358	68.358	0.063507								0	0	0	0.38822	1	15583	15583		9.3474	0.75416	1				24001	2934	15827	15984	32538	32538					-0.009085289770496274
WHRLGLLF	8	Unmodified	_WHRLGLLF_					0	0	0			REV__ENST00000216044.9_1_22:39127397-39127706:+|nuORF	REV__ENST00000216044.9_1_22:39127397-39127706:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.3036499023438	2	521.303262	1040.59197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.49	1	96.49	95.99	96.99	0								0	0	0	0.38822	1	24480	24480		10.183	0.83596	1		+		24002	11171	15828	15985	32539	32539					0.07329780504892369
WHRTQAHYC	9	Unmodified	_WHRTQAHYC_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2473754882812	2	601.269624	1200.5247	0.24235	0.00014572	-0.92001	-0.00055317	-0.67767	-0.00040746	601.2691440131629	35.926	0.36325	35.926	35.791	36.155	0					24	14	2	0	0	0	0.34646	2	6033	6033;6057		0.6015	0	1	30746	+		24003	8276	15829	15986	32540;32541	32540					-0.06754617768365279
WHRTQAHYC	9	Unmodified	_WHRTQAHYC_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	601.269624	1200.5247	0.24235	0.00014572	-0.92001	-0.00055317	-0.67767	-0.00040746	601.2691440131629	35.926	0.36325	35.926	35.791	36.155	0	-0.02336	6.6089E-06	NaN	0.6015	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30746	+		24004	8276	15829	15986							-0.06754617768365279
WHSCDHLS	8	Unmodified	_WHSCDHLS_					0	0	0			REV__ENSG00000019995|ENST00000359653|ZRANB1	REV__ENSG00000019995|ENST00000359653|ZRANB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.6918029785156	2	492.703251	983.39195	-0.52596	-0.00025914	2.8207	0.0013898	2.2947	0.0011306	492.70391480989764	41.846	0.62363	41.846	41.433	42.057	0					38	22	2	0	0	0	0.3576	1	7908	7908		4.756	2.1785	1	35998	+		24005	7996	15830	15987	32542	32542					-0.10041062225025144
WHSRQACPWEG	11	Unmodified	_WHSRQACPWEG_					0	0	0		ENST00000264025.7_1_11:119533714-119534059:-|nuORF	ENST00000264025.7_1_11:119533714-119534059:-|nuORF	ENST00000264025.7_1_11:119533714-119534059:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8703308105469	3	452.868256	1355.58294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.379	1	28.379	27.879	28.879	0								0	0	0	0.34083	1	3820	3820		0.45452	0.29519	1				24006	5883	15831	15988	32543	32543					-0.08062980913769024
WHSYEAAWV	9	Unmodified	_WHSYEAAWV_					0	0	0			REV__ENSG00000213759|ENST00000446444|UGT2B11	REV__ENSG00000213759|ENST00000446444|UGT2B11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7616577148438	2	574.761623	1147.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.613	1	25.705	25.205	26.205	0.091507								0	0	0	0.29525	1	2896	2896		0	0	1		+		24007	10247	15832	15989	32544	32544					-0.059160007336458875
WHTWAFMS	8	Unmodified	_WHTWAFMS_					0	0	0			REV__ENST00000478188.5_1_4:57883363-57883849:+|nuORF	REV__ENST00000478188.5_1_4:57883363-57883849:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2351684570312	2	533.234187	1064.45382	0.45592	0.00024311	0.41785	0.00022281	0.87377	0.00046593	533.2343300228223	94.321	0.60121	94.321	94.084	94.685	0					86	27	5	0	0	0	0.54097	1	23902	23902		0.69038	0	1	404560	+		24008	12063	15833	15990	32545	32545					-0.07582710805900206
WHWARRYG	8	Unmodified	_WHWARRYG_					0	0	0		ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2843627929688	2	566.283392	1130.55223	-0.103	-5.8328E-05	0.65839	0.00037284	0.55539	0.00031451	566.7849874777675	32.525	0.33128	32.599	32.456	32.787	0.07378					28	18	2	0	0	0	0.54097	1	4905	4905		0.69038	0	1	17777			24009	2621	15834	15991	32546	32546					-0.007823464458397211
WHWHSSSH	8	Unmodified	_WHWHSSSH_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|132|3|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|132|3|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2281494140625	2	532.228282	1062.44201	-0.24493	-0.00013036	0.035722	1.9012E-05	-0.20921	-0.00011135	532.2282300803616	21.563	0.53869	21.563	21.411	21.95	0					156	51	5	0	0	0	0.54081	1	1932	1932		0.79363	0	1	143590	+		24010	12711	15835	15992	32547	32547					-0.08671191504868148
WHYWDDCD	8	Unmodified	_WHYWDDCD_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.1979370117188	2	570.197999	1138.38144	-0.0081211	-4.6306E-06	-0.025104	-1.4314E-05	-0.033225	-1.8945E-05	570.1978201822561	23.017	0.35021	23.119	22.981	23.331	0.10178					55	33	2	0	0	0	0.54199	1	2157	2157		0	0	1	25036	+		24011	10042	15836	15993	32548	32548					-0.18221089670123547
WHYWDDCD	8	Unmodified	_WHYWDDCD_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.1982421875	2	570.197999	1138.38144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.502	1	24.598	24.098	25.098	0.096073								0	0	0	0.38822	1	2578	2578		0	0	1		+		24012	10042	15836	15993	32549	32549					-0.18221089670123547
WICLVPVR	8	Unmodified	_WICLVPVR_					0	0	0			REV__ENST00000476579.1_1_22:36633276-36635198:-|nuORF	REV__ENST00000476579.1_1_22:36633276-36635198:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7043762207031	2	493.286223	984.557893	-0.0059603	-2.9401E-06	3.1291	0.0015436	3.1232	0.0015406	493.28775985735075	40.155	0.22008	40.244	40.188	40.408	0.088562					9	7	2	0	0	0	0.3576	1	7222	7222		0.79363	0.10326	1	16047	+		24013	12056	15837	15994	32550	32550					0.06499616021631027
WICWFAAL	8	Unmodified	_WICWFAAL_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.2424621582031	2	505.251849	1008.48914	0.044328	2.2397E-05	-0.58521	-0.00029568	-0.54088	-0.00027328	505.251625808558	35.774	0.56515	35.774	35.589	36.155	0					63	21	5	0	0	0	0.53257	1	6133	6133		6.3541	1.5981	1	356690			24014	3005	15838	15995	32551	32551					-0.014760482780957318
WIFAAPGW	8	Unmodified	_WIFAAPGW_					0	0	0			REV__tr|U7T5S5|U7T5S5_FUSNUCarbonstarvationproteinCstAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00374PE=3SV=1	REV__tr|U7T5S5|U7T5S5_FUSNUCarbonstarvationproteinCstAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00374PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.78216552734375	2	474.242338	946.470124	-0.30395	-0.00014415	2.2297	0.0010574	1.9257	0.00091326	474.24341120172295	33.245	0.45485	33.319	32.992	33.447	0.074322					25	18	2	0	0	0	0.3576	1	5158	5158		2.8892	0	1	22088	+		24015	13306	15839	15996	32552	32552					-0.005252615774907099
WIFLWALF	8	Unmodified	_WIFLWALF_					0	0	0		TMEM170B|p.G67Efs*17|1|0.18|ENSG00000205269|chr6:11565766-11565766|G/-|frameshift_variant;ENSG00000205269|ENST00000379426|TMEM170B	TMEM170B|p.G67Efs*17|1|0.18|ENSG00000205269|chr6:11565766-11565766|G/-|frameshift_variant	TMEM170B|p.G67Efs*17|1|0.18|ENSG00000205269|chr6:11565766-11565766|G/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.291259765625	2	548.304939	1094.59532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.933	1	70.933	70.433	71.433	0								0	0	0	0.38822	1	16690	16690		11.114	0.93107	1				24016	5511	15840	15997	32553	32553					0.05181030558878774
WIFTRESI	8	Unmodified	_WIFTRESI_					0	0	0		ENST00000448644.2_1_6:133055390-133055831:-|nuORF	ENST00000448644.2_1_6:133055390-133055831:-|nuORF	ENST00000448644.2_1_6:133055390-133055831:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2820434570312	2	526.282192	1050.54983	0.37415	0.00019691	-0.065912	-3.4688E-05	0.30824	0.00016222	526.282038655776	65.216	0.66169	65.285	65.188	65.849	0.068909					34	25	2	0	0	0	0.53118	1	14868	14868		7.2892	0.56607	1	150130			24017	6557	15841	15998	32554	32554					0.026577603058512977
WIKEMDDWI	9	Unmodified	_WIKEMDDWI_					0	0	0			REV__ENST00000428275.1_1_X:53172740-53172956:-|nuORF	REV__ENST00000428275.1_1_X:53172740-53172956:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	412.2483825683594	3	412.530358	1234.56925	0.42857	0.0001768	1.9476	0.00080343	2.3761	0.00098023	412.5312834322075	54.838	0.4511	54.903	54.738	55.189	0.065128					33	18	3	0	0	0	0.25458	1	11676	11676		5.7319	0	1	92207	+		24018	11839	15842	15999	32555	32555					-0.03865651465548581
WILFEWNYAD	10	Unmodified	_WILFEWNYAD_					0	0	0			REV__ENST00000481652.1_1_1:114242829-114248598:-|nuORF	REV__ENST00000481652.1_1_1:114242829-114248598:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8704833984375	3	452.880156	1355.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.097	1	87.097	86.597	87.597	0								0	0	0	0.33952	1	21625	21625		0.77653	0.078866	1		+		24019	8818	15843	16000	32556	32556					-0.0449462018509621
WILLIYMKK	9	Unmodified	_WILLIYMKK_					0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|44	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|44	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.2791137695312	2	604.367213	1206.71987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.91	1	100.91	100.41	101.41	0								0	0	0	0.29525	1	25823	25823		0	0	1		+		24020	7767	15844	16001	32557	32557					0.12478159983902515
WILPNVKPF	9	Unmodified	_WILPNVKPF_					0	0	0		ENSG00000107518|ENST00000355044|ATRNL1;nc|ENSG00000107518|Q5VV63-2|ATRNL1	ENSG00000107518|ENST00000355044|ATRNL1	ENSG00000107518|ENST00000355044|ATRNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3264770507812	2	557.326402	1112.63825	0.21053	0.00011733	-0.11393	-6.3496E-05	0.096597	5.3836E-05	557.3262940976535	73.366	0.8961	73.366	73.053	73.949	0					46	31	2	0	0	0	0.21398	1	17438	17438		16.942	6.1184	1	269750			24021	1557	15845	16002	32558	32558					0.0864380061632346
WILPNVKPF	9	Unmodified	_WILPNVKPF_					0	0	0		ENSG00000107518|ENST00000355044|ATRNL1;nc|ENSG00000107518|Q5VV63-2|ATRNL1	ENSG00000107518|ENST00000355044|ATRNL1	ENSG00000107518|ENST00000355044|ATRNL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3084106445312	2	557.326402	1112.63825	0.45739	0.00025492	0.0022361	1.2462E-06	0.45963	0.00025616	557.82786544338	73.34	0.86958	73.393	73.036	73.906	0.052574					55	33	2	0	0	0	0.2298	1	17326	17326		16.942	4.4107	1	285220			24022	1557	15845	16002	32559	32559					0.0864380061632346
WIMGVMHSMS	10	Unmodified	_WIMGVMHSMS_					0	0	0		ENSG00000165762|ENST00000641885|OR4K2	ENSG00000165762|ENST00000641885|OR4K2	ENSG00000165762|ENST00000641885|OR4K2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7596435546875	2	589.761397	1177.50824	0.403	0.00023767	-2.19	-0.0012916	-1.787	-0.0010539	589.7589601948729	56.137	2.3284	56.137	55.889	58.217	0					223	84	3	0	0	0	0.37232	1	12590	12590		14.838	0.93222	1	5486500			24023	4106	15846	16003	32560	32560					-0.07341203040982691
WIMGVMHSMS	10	Unmodified	_WIMGVMHSMS_					0	0	0		ENSG00000165762|ENST00000641885|OR4K2	ENSG00000165762|ENST00000641885|OR4K2	ENSG00000165762|ENST00000641885|OR4K2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7589721679688	2	589.761397	1177.50824	0.39279	0.00023165	-1.3287	-0.00078364	-0.93596	-0.00055199	589.7589000961185	56.113	2.4844	56.18	55.648	58.132	0.066448					260	93	5	0	0	0	0.37232	2	12319	12319;12371		14.838	0.93222	1	4997900			24024	4106	15846	16003	32561;32562	32561					-0.07341203040982691
WIMIALAL	8	Unmodified	_WIMIALAL_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.7774353027344	2	465.777699	929.540846	0.21375	9.9561E-05	-0.47134	-0.00021954	-0.25758	-0.00011998	465.77744294207014	74.42	0.95703	74.469	74.071	75.028	0.048546					47	34	2	0	0	0	0.53771	1	17588	17588		2.8892	0	1	173540			24025	4866	15847	16004	32563	32563					0.07325695415806877
WINKKKKL	8	Unmodified	_WINKKKKL_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1;SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.347900390625	2	529.347669	1056.68079	0.31037	0.00016429	3.0377	0.001608	3.3481	0.0017723	530.3531943472107	109.17	0.17016	109.19	109.08	109.25	0.019402					33	22	3	0	0	0	0.3576	1	27925	27925		0.69038	0	1	2413500			24026	3918	15848	16005	32564	32564					0.15471195744567012
WINKLLCM	8	Unmodified	_WINKLLCM_					0	0	0		ENST00000498336.5_1_6:30525121-30529202:+|nuORF	ENST00000498336.5_1_6:30525121-30529202:+|nuORF	ENST00000498336.5_1_6:30525121-30529202:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.771240234375	2	510.772091	1019.52963	-0.035198	-1.7978E-05	-0.84667	-0.00043246	-0.88187	-0.00045044	510.7715104313766	24.625	0.60544	24.721	24.499	25.105	0.096073					97	53	3	0	0	0	0.54081	1	2680	2680		0.79363	0	1	85813			24027	6853	15849	16006	32565	32565					0.02064550050033631
WIPAFFFY	8	Unmodified	_WIPAFFFY_					0	0	0		ST8SIA3|p.H251Y|1|0.48|ENSG00000177511|chr18:57357361-57357361|C/T|missense_variant	ST8SIA3|p.H251Y|1|0.48|ENSG00000177511|chr18:57357361-57357361|C/T|missense_variant	ST8SIA3|p.H251Y|1|0.48|ENSG00000177511|chr18:57357361-57357361|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.772705078125	2	545.773471	1089.53239	-0.37329	-0.00020373	-0.40872	-0.00022307	-0.78201	-0.0004268	545.7731536516926	15.749	0.25007	15.749	15.656	15.906	0					69	31	3	0	0	0	0.54081	1	593	593		0.79363	0	1	58137			24028	13401	15850	16007	32566	32566					-0.008795352291599556
WIPGPGAI	8	Unmodified	_WIPGPGAI_					0	0	0		THAP9|p.Y200Lfs*2|1|0.26|ENSG00000168152|chr4:82907801-82907802|-/T|frameshift_variant;ENSG00000168152|ENST00000302236|THAP9	THAP9|p.Y200Lfs*2|1|0.26|ENSG00000168152|chr4:82907801-82907802|-/T|frameshift_variant	THAP9|p.Y200Lfs*2|1|0.26|ENSG00000168152|chr4:82907801-82907802|-/T|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.7291564941406	2	405.729064	809.443575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.521	1	67.586	67.086	68.086	0.065071								0	0	0	0.38643	1	15500	15500		17.087	5.9721	1				24029	4267	15851	16008	32567	32567					0.03123049531200195
WIPSCRPSW	9	Unmodified	_WIPSCRPSW_					0	0	0		ENST00000379388.6_1_6:12123326-12123377:+|nuORF	ENST00000379388.6_1_6:12123326-12123377:+|nuORF	ENST00000379388.6_1_6:12123326-12123377:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.27685546875	2	566.273844	1130.53313	0.021252	1.2034E-05	-0.33291	-0.00018852	-0.31166	-0.00017648	567.2776342799755	105.08	0.78152	105.08	104.77	105.55	0					153	79	3	0	0	0	0.3182	1	27082	27082		4.3292	2.2432	1	148420			24030	6275	15852	16009	32568	32568					-0.0269106385176201
WISFDYYRC	9	Unmodified	_WISFDYYRC_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.3590698242188	2	626.776416	1251.53828	0.44236	0.00027726	2.4674	0.0015465	2.9098	0.0018238	626.7776012722023	81.794	0.65282	81.816	81.392	82.044	0.021866					32	23	2	0	0	0	0.25644	1	19780	19780		3.9444	0.3479	1	75852	+		24031	9566	15853	16010	32569	32569					-0.07742804779786638
WITADPNFR	9	Unmodified	_WITADPNFR_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.28173828125	2	560.282723	1118.55089	0.077125	4.3212E-05	-2.8366	-0.0015893	-2.7595	-0.0015461	560.2811367175971	32.714	0.32777	32.788	32.637	32.965	0.07378					36	15	3	0	0	0	0.30397	1	5014	5014		6.2058	0.47393	1	83949	+		24032	9867	15854	16011	32570	32570					-0.003640253252342518
WIVEIDAL	8	Unmodified	_WIVEIDAL_					0	0	0			REV__nc|ENSG00000113812|Q9H981-2|ACTR8	REV__nc|ENSG00000113812|Q9H981-2|ACTR8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.76593017578125	2	479.765843	957.517133	-0.17035	-8.1728E-05	0.11228	5.3869E-05	-0.058067	-2.7859E-05	479.76590339694593	90.982	0.46163	91.017	90.763	91.225	0.035446					25	16	2	0	0	0	0.53345	1	22703	22703		5.7604	1.4312	1	138910	+		24033	8752	15855	16012	32571	32571					0.036675531829814645
WIVFRWNY	8	Unmodified	_WIVFRWNY_					0	0	0			REV__ENST00000560936.2_1_15:60687964-60688054:-|nuORF	REV__ENST00000560936.2_1_15:60687964-60688054:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.7827758789062	2	592.306001	1182.59745	0.30251	0.00017918	-2.6686	-0.0015807	-2.3661	-0.0014015	592.3061566255917	79.128	0.37585	79.154	78.958	79.334	0.026428					17	12	2	0	0	0	0.3576	1	19048	19048		5.7604	1.0044	1	48437	+		24034	12481	15856	16013	32572	32572					0.01345459296703666
WIWDRFHSH	9	Unmodified	_WIWDRFHSH_					0	0	0		ENST00000453184.2_1_2:90007722-90008108:+|nuORF	ENST00000453184.2_1_2:90007722-90008108:+|nuORF	ENST00000453184.2_1_2:90007722-90008108:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.3088989257812	2	642.307064	1282.59957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.579	1	97.579	97.079	98.079	0								0	0	0	0.29233	1	24809	24809		0.6015	0.14316	1				24035	6574	15857	16014	32573	32573					-0.030421119654647555
WIWICFGWI	9	Unmodified	_WIWICFGWI_					0	0	0		ENST00000482384.1_1_1:109756594-109756711:+|nuORF	ENST00000482384.1_1_1:109756594-109756711:+|nuORF	ENST00000482384.1_1_1:109756594-109756711:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.2113342285156	3	408.540529	1222.59976	-0.50494	-0.00020629	-0.39633	-0.00016192	-0.90127	-0.0003682	408.5403523368908	41.233	0.29807	41.322	41.153	41.451	0.089672					12	9	2	0	0	0	0.25809	1	7538	7538		1.1933	0.49568	1	20201			24036	6759	15858	16015	32574	32574					-0.0026382828982605133
WIWICFGWI	9	Unmodified	_WIWICFGWI_					0	0	0		ENST00000482384.1_1_1:109756594-109756711:+|nuORF	ENST00000482384.1_1_1:109756594-109756711:+|nuORF	ENST00000482384.1_1_1:109756594-109756711:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	408.540529	1222.59976	-0.20259	-8.2765E-05	-0.61691	-0.00025203	-0.81949	-0.0003348	408.54051849798503	40.951	0.26414	40.951	40.881	41.146	0	-0.18553	-0.00011559	NaN	1.1933	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24870			24037	6759	15858	16015							-0.0026382828982605133
WIWSFWSWSLL	11	Unmodified	_WIWSFWSWSLL_					0	0	0			REV__ENST00000342245.8_1_11:6415895-6416042:+|nuORF	REV__ENST00000342245.8_1_11:6415895-6416042:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.25555419921875	3	504.255446	1509.74451	0.42052	0.00021205	-1.6373	-0.00082564	-1.2168	-0.00061359	504.255275383913	71.195	0.43742	71.254	71.026	71.464	0.058578					31	15	3	0	0	0	0.39824	1	16611	16611		4.7159	1.8726	1	265390	+		24038	11465	15859	16016	32575	32575					0.01002511390993277
WIYVCAGMFI	10	Unmodified	_WIYVCAGMFI_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3139038085938	2	601.790481	1201.56641	0.50006	0.00030093	-0.84841	-0.00051057	-0.34836	-0.00020964	601.7897637528463	75.122	0.41631	75.166	75.024	75.44	0.044037					20	14	2	0	0	0	0.31512	1	17789	17789		12.532	1.7076	1	194820			24039	1364	15860	16017	32576	32576					-0.026311981240496607
WKCFLAVPDP	10	Unmodified	_WKCFLAVPDP_					0	0	0		nc|ENSG00000236790|Q6ZSB3|LINC00299	nc|ENSG00000236790|Q6ZSB3|LINC00299	nc|ENSG00000236790|Q6ZSB3|LINC00299	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.8409423828125	2	588.299527	1174.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.424	1	96.464	95.964	96.964	0.039772								0	0	0	0.33487	1	24302	24302		6.2058	0	1				24040	7610	15861	16018	32577	32577					0.004192601222939629
WKEKIFII	8	Unmodified	_WKEKIFII_					0	0	0			REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.8289184570312	2	538.828778	1075.643	0.4647	0.0002504	-0.064543	-3.4777E-05	0.40016	0.00021562	538.8286884095743	78.946	1.1169	78.976	78.738	79.855	0.030151					96	39	4	0	0	0	0.53026	1	19049	19049		7.9102	0	1	2165000	+		24041	7919	15862	16019	32578	32578					0.10820684759096366
WKELREAL	8	Unmodified	_WKELREAL_					0	0	0			REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7957153320312	2	522.795466	1043.57638	0.5371	0.00028079	-0.27437	-0.00014344	0.26273	0.00013735	522.7953144178474	55.053	1.4213	55.053	54.614	56.035	0					141	51	4	0	0	0	0.28175	1	11951	11951		36.044	1.9418	1	5065600	+		24042	8505	15863	16020	32579	32579					0.05633449197171103
WKEMLKFQD	9	Unmodified	_WKEMLKFQD_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.21881103515625	3	408.874236	1223.60088	0.082871	3.3884E-05	2.1405	0.0008752	2.2234	0.00090909	408.8752491284915	31.469	0.47322	31.469	31.258	31.731	0					30	20	2	0	0	0	0.25699	1	4746	4746		2.086	0	1	10651			24043	2524	15864	16021	32580	32580					-0.001976587115905204
WKFQRYDLI	9	Unmodified	_WKFQRYDLI_					0	0	0		TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8425903320312	2	634.842948	1267.67134	0.37443	0.0002377	-0.54482	-0.00034588	-0.17039	-0.00010817	634.8424364366708	99.319	0.41748	99.319	99.139	99.556	0					60	25	4	0	0	0	0.11547	1	25345	25345		29.082	1.8583	1	805590			24044	13753	15865	16022	32581	32581					0.048213826683877414
WKFQRYDLI	9	Unmodified	_WKFQRYDLI_					0	0	0		TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	634.842948	1267.67134	0.48562	0.00030829	-0.38042	-0.00024151	0.1052	6.6783E-05	634.8423520920715	99.331	0.45457	99.374	99.166	99.62	0.042831	0.027482	9.6986E-05	NaN	29.082	70	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323290			24045	13753	15865	16022							0.048213826683877414
WKKMSSIH	8	Unmodified	_WKKMSSIH_					0	0	0		ENSG00000134897|ENST00000257336|BIVM;nc|ENSG00000134897|Q86UB2-2|BIVM;ENST00000490317.1_1_13:103473357-103492212:+|nuORF	ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.74334716796875	2	508.770937	1015.52732	0.063478	3.2296E-05	1.2031	0.0006121	1.2666	0.0006444	508.771985784917	35.462	0.55947	35.462	35.002	35.561	0					25	19	2	0	0	0	0.3576	1	5948	5948		2.5775	0	1	36995			24046	2697	15866	16023	32582	32582					0.02017837636594777
WKNEQKGEKI	10	Unmodified	_WKNEQKGEKI_					0	0	0		ENSG00000159403|ENST00000647956|C1R;nc|ENSG00000159403|P00736|C1R	ENSG00000159403|ENST00000647956|C1R	ENSG00000159403|ENST00000647956|C1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.3407592773438	2	630.340769	1258.66699	-0.15434	-9.7289E-05	0.15548	9.8006E-05	0.0011374	7.1695E-07	630.3408741069344	46.111	0.62624	46.111	45.757	46.384	0					40	21	3	0	0	0	0.44021	1	9112	9112		6.6304	0	1	125820			24047	3729	15867	16024	32583	32583					0.04799873454817316
WKPEIINRKRF	11	Unmodified	_WKPEIINRKRF_					0	0	0		PLRG1|p.K510N|1|0.4|ENSG00000171566|chr4:154536700-154536700|C/G|missense_variant	PLRG1|p.K510N|1|0.4|ENSG00000171566|chr4:154536700-154536700|C/G|missense_variant	PLRG1|p.K510N|1|0.4|ENSG00000171566|chr4:154536700-154536700|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.9586486816406	3	496.292894	1485.85685	0.634	0.00031465	0.39305	0.00019507	1.0271	0.00050972	496.29306860420365	98.563	0.83857	98.605	98.368	99.207	0.041931					107	51	3	0	0	0	0.31097	1	24965	24965		0.45452	0.35968	1	229450			24048	7670	15868	16025	32584	32584					0.1333578518779177
WKPMKGWGAPC	11	Unmodified	_WKPMKGWGAPC_					0	0	0			REV__ENST00000265069.12_1_5:32420185-32444730:-|nuORF	REV__ENST00000265069.12_1_5:32420185-32444730:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.7879638671875	2	630.804454	1259.59435	0.30375	0.00019161	-1.4449	-0.00091146	-1.1412	-0.00071985	631.3051815594079	60.653	0.29291	60.653	60.456	60.749	0					16	10	2	0	0	0	0.31072	1	13497	13497		3.5965	0	1	69090	+		24049	11259	15869	16026	32585	32585					-0.02505875143947378
WKPTPSVME	9	Unmodified	_WKPTPSVME_					0	0	0			REV__ENST00000531346.1_1_11:120196007-120201221:+|nuORF	REV__ENST00000531346.1_1_11:120196007-120201221:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.24755859375	2	537.76806	1073.52157	0.26833	0.0001443	-0.35294	-0.0001898	-0.084618	-4.5505E-05	537.7677588796994	45.918	0.75951	46.003	45.606	46.365	0.085617					58	28	3	0	0	0	0.25845	1	8850	8850		2.0598	0	1	126710	+		24050	10528	15870	16027	32586	32586					-0.01225305665752785
WKPTPSVME	9	Unmodified	_WKPTPSVME_					0	0	0			REV__ENST00000531346.1_1_11:120196007-120201221:+|nuORF	REV__ENST00000531346.1_1_11:120196007-120201221:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	537.76806	1073.52157	0.021769	1.1706E-05	-0.37907	-0.00020385	-0.3573	-0.00019214	537.7677983284228	45.975	0.71683	45.975	45.703	46.42	0	-0.01395	-1.4621E-05	NaN	0.52476	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161250	+		24051	10528	15870	16027							-0.01225305665752785
WKRGSRFG	8	Unmodified	_WKRGSRFG_					0	0	0		ENST00000393537.4_1_2:97513863-97513980:-|nuORF	ENST00000393537.4_1_2:97513863-97513980:-|nuORF	ENST00000393537.4_1_2:97513863-97513980:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7253723144531	2	497.272493	992.530432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.919	1	99.919	99.419	100.42	0								0	0	0	0.38822	1	25521	25521		0.79363	0	1				24052	6321	15871	16028	32587	32587					0.03386848805621412
WKRLRRSSRGR	11	Unmodified	_WKRLRRSSRGR_					0	0	0			REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF	REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.62738037109375	3	486.62727	1456.85998	0.088261	4.295E-05	0.14978	7.2888E-05	0.23804	0.00011584	486.9617566537487	102.25	0.8049	102.25	101.98	102.79	0					151	56	5	0	0	0	0.41713	1	26256	26256		0.40827	0.40827	1	452060	+		24053	11311	15872	16029	32588	32588					0.149824730851833
WKRLRRSSRGR	11	Unmodified	_WKRLRRSSRGR_					0	0	0			REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF	REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.6273498535156	3	486.62727	1456.85998	0.22699	0.00011046	0.039814	1.9375E-05	0.26681	0.00012984	486.62719476227863	102.23	0.60775	102.27	102.04	102.64	0.040909					110	42	3	0	0	0	0.41713	2	26054	26054;26097		0.40827	0.40827	1	349870	+		24054	11311	15872	16029	32589;32590	32589					0.149824730851833
WKRRPGWK	8	Unmodified	_WKRRPGWK_					0	0	0		ENST00000286201.2_1_2:202901244-202901346:+|nuORF	ENST00000286201.2_1_2:202901244-202901346:+|nuORF	ENST00000286201.2_1_2:202901244-202901346:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.3273315429688	2	557.32506	1112.63557	0.49847	0.00027781	1.2664	0.00070582	1.7649	0.00098363	557.3259412450501	101.17	0.4977	101.17	100.91	101.4	0					49	27	3	0	0	0	0.54097	3	25875	25875;25931;25937		0.69038	0	1	58523			24055	5940	15873	16030	32591;32592;32593	32591					0.0837539000203833
WKRRPGWK	8	Unmodified	_WKRRPGWK_					0	0	0		ENST00000286201.2_1_2:202901244-202901346:+|nuORF	ENST00000286201.2_1_2:202901244-202901346:+|nuORF	ENST00000286201.2_1_2:202901244-202901346:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3260498046875	2	557.32506	1112.63557	0.68367	0.00038103	1.0248	0.00057113	1.7084	0.00095216	557.3254355477047	101.11	0.42472	101.15	100.94	101.36	0.042831					36	24	2	0	0	0	0.54097	3	25686	25686;25737;25784		0.69038	0	1	44882			24056	5940	15873	16030	32594;32595;32596	32594					0.0837539000203833
WKRRVWARDWR	11	Unmodified	_WKRRVWARDWR_					0	0	0		ENST00000334793.5_1_1:47906026-47906182:+|nuORF	ENST00000334793.5_1_1:47906026-47906182:+|nuORF	ENST00000334793.5_1_1:47906026-47906182:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.149169921875	4	404.477372	1613.88038	-0.25785	-0.00010429	-0.53042	-0.00021454	-0.78827	-0.00031884	404.4771579971444	43.193	0.97153	43.282	42.98	43.951	0.089764					110	35	5	0	0	0	0.31101	1	8051	8051		0.094841	0	1	509580			24057	6071	15874	16031	32597	32597					0.09799643744986497
WKRRVWARDWR	11	Unmodified	_WKRRVWARDWR_					0	0	0		ENST00000334793.5_1_1:47906026-47906182:+|nuORF	ENST00000334793.5_1_1:47906026-47906182:+|nuORF	ENST00000334793.5_1_1:47906026-47906182:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		4	404.477372	1613.88038	0.086174	3.4855E-05	-1.1636	-0.00047064	-1.0774	-0.00043578	404.72760736344054	43.417	1.1239	43.417	43.119	44.243	0	0.067092	-0.0006866	NaN	0.094841	104	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162350			24058	6071	15874	16031							0.09799643744986497
WKSFFYLHL	9	Unmodified	_WKSFFYLHL_					0	0	0		ENST00000394236.7_1_3:93624899-93624935:-|nuORF	ENST00000394236.7_1_3:93624899-93624935:-|nuORF	ENST00000394236.7_1_3:93624899-93624935:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3255615234375	2	620.829309	1239.64407	0.19737	0.00012253	-3.5322	-0.0021929	-3.3349	-0.0020704	620.8271145513114	100.56	0.19212	100.6	100.47	100.66	0.042839					14	12	2	0	0	0	0.25981	1	25551	25551		0.6015	0.076735	1	26494			24059	6324	15875	16032	32598	32598					0.033828991279960974
WKTILEEI	8	Unmodified	_WKTILEEI_					0	0	0			REV__TRIP4|p.C86Sfs*8|1|0.09|ENSG00000103671|chr15:64394101-64394101|G/-|frameshift_variant	REV__TRIP4|p.C86Sfs*8|1|0.09|ENSG00000103671|chr15:64394101-64394101|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7840576171875	2	516.292225	1030.5699	0.48253	0.00024913	0.078874	4.0722E-05	0.5614	0.00028985	516.2920840467319	82.867	0.71564	82.867	82.563	83.279	0					58	24	3	0	0	0	0.50159	1	20454	20454		12.532	0	1	469730	+		24060	8488	15876	16033	32599	32599					0.05583511245822592
WKWFKHIIRFI	11	Unmodified	_WKWFKHIIRFI_					0	0	0		ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3096313476562	3	525.309996	1572.90816	0.40925	0.00021498	-0.23539	-0.00012365	0.17386	9.1329E-05	525.3098138693186	98.807	0.64375	98.849	98.623	99.267	0.041931					73	42	2	0	0	0	0.4185	1	25065	25065		0.094841	0	1	111240			24061	6389	15877	16034	32600	32600					0.14462153952536028
WKYEVTYRK	9	Unmodified	_WKYEVTYRK_					0	0	0		nc|ENSG00000142627|P29317-2|EPHA2;EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant;EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant;ENSG00000142627|ENST00000358432|EPHA2	nc|ENSG00000142627|P29317-2|EPHA2	nc|ENSG00000142627|P29317-2|EPHA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.8388061523438	2	636.840405	1271.66626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.26	1	102.3	101.8	102.8	0.040916								0	0	0	0.28724	1	26071	26071		1.6526	0.17072	1				24062	3114	15878	16035	32601	32601					0.041290788057494865
WLDHWLQHR	9	Unmodified	_WLDHWLQHR_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	430.89093017578125	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.909	1	60.909	60.409	61.409	0								0	0	0	0.27152	1	13634	13634		4.897	1.0511	1				24063	1876	15879	16036	32602	32602					0.008538634428759906
WLDHWLQHR	9	Unmodified	_WLDHWLQHR_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	430.8886413574219	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.771	1	61.771	61.271	62.271	0								0	0	0	0.29058	1	13899	13899		0.96228	0.18574	1				24064	1876	15879	16036	32603	32603					0.008538634428759906
WLDRLSNG	8	Unmodified	_WLDRLSNG_					0	0	0		ENST00000474125.6_1_10:102771704-102781716:-|nuORF;nc|ENSG00000186862|Q9H5P4-2|PDZD7;nc|ENSG00000186862|Q9H5P4-1|PDZD7;ENSG00000186862|ENST00000619208|PDZD7	ENST00000474125.6_1_10:102771704-102781716:-|nuORF	ENST00000474125.6_1_10:102771704-102781716:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.7406921386719	2	480.748516	959.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.895	1	23.994	23.494	24.494	0.099739								0	0	0	0.38822	1	2413	2413		2.5775	0.51773	1				24065	5097	15880	16037	32604	32604					0.0011173009490903496
WLDTNKFY	8	Unmodified	_WLDTNKFY_					0	0	0			REV__ENSG00000104375|ENST00000419617|STK3	REV__ENSG00000104375|ENST00000419617|STK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2767944335938	2	543.766374	1085.5182	0.45538	0.00024762	-3.0487	-0.0016578	-2.5933	-0.0014102	543.7656474198968	88.414	0.086906	88.414	88.374	88.46	0					4	2	2	0	0	0	0.35759	1	22019	22019		9.3474	0	1	37099	+		24066	8506	15881	16038	32605	32605					-0.021142324480933894
WLEAQVHQLLQ	11	Unmodified	_WLEAQVHQLLQ_					0	0	0		nc|ENSG00000082512|O00463-3|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	456.2504577636719	3	455.582221	1363.72483	0.36151	0.0001647	2.0179	0.00091934	2.3795	0.001084	455.5836265495046	58.134	0.36229	58.134	57.855	58.217	0					29	12	3	0	0	0	0.40738	1	12781	12781		2.6312	0.19645	1	100450			24067	922	15882	16039	32606	32606					0.057521353802485464
WLEAQVHQLLQ	11	Unmodified	_WLEAQVHQLLQ_					0	0	0		nc|ENSG00000082512|O00463-3|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	455.582221	1363.72483	0.18716	8.5265E-05	0.57752	0.00026311	0.76468	0.00034837	455.9172642360386	57.995	0.30885	58.063	57.825	58.134	0.068375	-0.035582	-0.0010879	NaN	2.6312	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98272			24068	922	15882	16039							0.057521353802485464
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3475952148438	2	622.347335	1242.68012	-0.050456	-3.1401E-05	0.39545	0.00024611	0.34499	0.00021471	622.3473921778954	89.889	2.3544	89.923	88.979	91.333	0.034058					155	92	3	0	0	0	0.3182	1	22561	22561		4.3292	0.73274	1	410760	+		24069	11766	15883	16040	32607	32607					0.06848356304840308
WLGILLCL	8	Unmodified	_WLGILLCL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.777587890625	2	465.777699	929.540846	0.28327	0.00013194	-0.41619	-0.00019385	-0.13292	-6.191E-05	465.777423347122	77.696	1.4809	77.696	77.365	78.846	0					115	52	3	0	0	0	0.53771	1	19030	19030		2.8892	0	1	419260			24070	5516	15884	16041	32608	32608					0.07325695415806877
WLGPGALP	8	Unmodified	_WLGPGALP_					0	0	0			REV__ENST00000380817.7_1_22:50883462-50883615:-|nuORF	REV__ENST00000380817.7_1_22:50883462-50883615:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.7296447753906	2	405.729064	809.443575	0.67698	0.00027467	-0.39419	-0.00015993	0.2828	0.00011474	405.72880908304546	67.534	0.30099	67.534	67.368	67.669	0					22	10	3	0	0	0	0.51202	1	15657	15657		11.114	0	1	102790	+		24071	11670	15885	16042	32609	32609					0.031230495311774575
WLIEYLLC	8	Unmodified	_WLIEYLLC_					0	0	0		ENST00000282003.6_1_13:79188644-79188734:-|nuORF	ENST00000282003.6_1_13:79188644-79188734:-|nuORF	ENST00000282003.6_1_13:79188644-79188734:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7774658203125	2	526.777896	1051.54124	-0.23794	-0.00012534	0.061463	3.2378E-05	-0.17648	-9.2965E-05	526.7779557688996	24.758	2.2137	24.758	23.461	25.675	0					347	186	2	0	0	0	0.54097	2	2444	2444;2858		0.69038	0	1	49592			24072	5931	15886	16043	32610;32611	32610					0.017530703450347573
WLISSREKY	9	Unmodified	_WLISSREKY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.7828369140625	2	591.319306	1180.62406	0.49746	0.00029416	3.6474	0.0021568	4.1449	0.0024509	591.3216455298071	79.293	0.32321	79.293	79.188	79.511	0					12	10	2	0	0	0	0.25281	1	19242	19242		6.7232	1.9672	1	77186	+		24073	9733	15887	16044	32612	32612					0.040971033973846716
WLKKILLL	8	Unmodified	_WLKKILLL_					0	0	0		ENST00000433031.1_1_7:57216973-57217525:-|nuORF	ENST00000433031.1_1_7:57216973-57217525:-|nuORF	ENST00000433031.1_1_7:57216973-57217525:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.3582153320312	2	513.857338	1025.70012	-0.010928	-5.6153E-06	1.2016	0.00061743	1.1906	0.00061182	514.3583022455908	113.08	0.40314	113.08	113.02	113.42	0					78	58	2	0	0	0	0.54199	1	28980	28980		0	0	1	336190			24074	6493	15888	16045	32613	32613					0.1883015203547984
WLKKILLL	8	Unmodified	_WLKKILLL_					0	0	0		ENST00000433031.1_1_7:57216973-57217525:-|nuORF	ENST00000433031.1_1_7:57216973-57217525:-|nuORF	ENST00000433031.1_1_7:57216973-57217525:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.358642578125	2	513.857338	1025.70012	0.30493	0.00015669	0.38238	0.00019649	0.68732	0.00035318	514.3584048517622	113.27	0.39529	113.28	113.11	113.5	0.013817					78	56	2	0	0	0	0.3576	1	28878	28878		0.69038	0	1	549240			24075	6493	15888	16045	32614	32614					0.1883015203547984
WLKKILLL	8	Unmodified	_WLKKILLL_					0	0	0		ENST00000433031.1_1_7:57216973-57217525:-|nuORF	ENST00000433031.1_1_7:57216973-57217525:-|nuORF	ENST00000433031.1_1_7:57216973-57217525:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	513.857338	1025.70012	0.30385	0.00015613	1.6873	0.00086703	1.9911	0.0010232	514.3582388056831	112.95	0.21361	112.96	112.89	113.11	0.013809	-0.057167	0.00020256	NaN	0	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	623490			24076	6493	15888	16045							0.1883015203547984
WLKLLLRW	8	Unmodified	_WLKLLLRW_					0	0	0		ENST00000592819.1_2_19:13010157-13010840:-|nuORF	ENST00000592819.1_2_19:13010157-13010840:-|nuORF	ENST00000592819.1_2_19:13010157-13010840:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.359375	2	564.358037	1126.70152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.14	1	115.15	114.65	115.65	0.013092								0	0	0	0.38822	1	29277	29277		0.69038	0	1				24077	7276	15889	16046	32615	32615					0.14323786124236904
WLLRCALCI	9	Unmodified	_WLLRCALCI_					0	0	0			REV__nc|ENSG00000102312|Q9H237-4|PORCN	REV__nc|ENSG00000102312|Q9H237-4|PORCN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7985229492188	2	545.79864	1089.58273	0.21336	0.00011645	-0.059983	-3.2739E-05	0.15337	8.3711E-05	545.7984858055739	17.117	0.36641	17.2	17.04	17.406	0.083694					109	45	3	0	0	0	0.35102	1	775	775		0	0	1	59653	+		24078	8450	15890	16047	32616	32616					0.04151927832663205
WLLVLCAL	8	Unmodified	_WLLVLCAL_					0	0	0		ENST00000555171.1_1_14:60622706-60632135:-|nuORF;ENST00000556502.1_1_14:60619584-60632027:-|nuORF;ENSG00000100612|ENST00000557185|DHRS7	ENST00000555171.1_1_14:60622706-60632135:-|nuORF	ENST00000555171.1_1_14:60622706-60632135:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	465.77734375	2	465.777699	929.540846	0.16637	7.7492E-05	-0.44001	-0.00020495	-0.27364	-0.00012746	465.77743259428183	76.227	0.9752	76.266	76.047	77.022	0.039238					53	40	2	0	0	0	0.53771	1	18224	18224		2.8892	0	1	949910			24079	1210	15891	16048	32617	32617					0.07325695415806877
WLLWLCYL	8	Unmodified	_WLLWLCYL_					0	0	0		ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7970581054688	2	555.296256	1108.57796	-0.14363	-7.9757E-05	3.4211	0.0018997	3.2775	0.00182	555.2978450123571	20.82	0.056746	20.82	20.79	20.846	0					10	6	2	0	0	0	0.3576	1	1699	1699		0.79363	0	1	12964			24080	1749	15892	16049	32618	32618					0.028013669615802428
WLMECILL	8	Unmodified	_WLMECILL_					0	0	0			REV__ENST00000304735.3_1_16:4432961-4433090:+|nuORF	REV__ENST00000304735.3_1_16:4432961-4433090:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7672119140625	2	510.766474	1019.5184	0.77939	0.00039809	-0.59793	-0.0003054	0.18146	9.2685E-05	510.76625529440366	84.748	0.47072	84.748	84.544	85.014	0					30	21	2	0	0	0	0.51887	1	20884	20884		10.183	0	1	151750	+		24081	11353	15893	16050	32619	32619					0.009417279559102099
WLPEEPEGR	9	Unmodified	_WLPEEPEGR_					0	0	0		ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7889404296875	2	556.772188	1111.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.598	1	73.598	73.098	74.098	0								0	0	0	0.20792	1	17504	17504		16.942	4.4107	1				24082	5500	15894	16051	32620	32620					-0.02148035424761474
WLPGTPGF	8	Unmodified	_WLPGTPGF_					0	0	0		ENST00000390654.7_2_5:177686746-178016941:-|nuORF	ENST00000390654.7_2_5:177686746-178016941:-|nuORF	ENST00000390654.7_2_5:177686746-178016941:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.7261047363281	2	437.726521	873.438489	0.69681	0.00030501	-0.84808	-0.00037123	-0.15126	-6.6212E-05	437.726114275717	64.581	0.46336	64.581	64.457	64.92	0					24	16	2	0	0	0	0.53423	1	14758	14758		5.2307	0	1	165720			24083	6311	15895	16052	32621	32621					-0.0032925433142736438
WLQPITIF	8	Unmodified	_WLQPITIF_					0	0	0		ENST00000557324.5_1_14:45599079-45599966:-|nuORF	ENST00000557324.5_1_14:45599079-45599966:-|nuORF	ENST00000557324.5_1_14:45599079-45599966:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.8232116699219	2	509.292028	1016.5695	0.45735	0.00023293	-0.19156	-9.7562E-05	0.26579	0.00013536	509.29181208249616	100.42	0.37164	100.47	100.29	100.66	0.042839					25	21	2	0	0	0	0.3576	1	25534	25534		5.2307	0.90143	1	42785			24084	7134	15896	16053	32622	32622					0.06188136316609416
WLQWKWHPV	9	Unmodified	_WLQWKWHPV_					0	0	0		ENST00000490247.1_1_15:39881220-39881283:+|nuORF	ENST00000490247.1_1_15:39881220-39881283:+|nuORF	ENST00000490247.1_1_15:39881220-39881283:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.8416748046875	2	640.340375	1278.6662	0.066727	4.2728E-05	-0.32949	-0.00021099	-0.26277	-0.00016826	640.8416667695097	19.25	0.22114	19.346	19.235	19.456	0.095232					25	23	2	0	0	0	0.34704	1	1236	1236		0.52476	0.066424	1	16712			24085	6804	15897	16054	32623	32623					0.03801123596394973
WLRNGHNQ	8	Unmodified	_WLRNGHNQ_					0	0	0		ENST00000420737.1_1:146016970-146019748:+|nuORF	ENST00000420737.1_1:146016970-146019748:+|nuORF	ENST00000420737.1_1:146016970-146019748:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7578735351562	2	512.757207	1023.49986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.456	1	25.456	24.956	25.956	0								0	0	0	0.38822	1	2980	2980		0.69038	0	1				24086	6448	15898	16055	32624	32624					-0.01094929579426207
WLRREPLVTP	10	Unmodified	_WLRREPLVTP_					0	0	0			REV__ENST00000458005.2_1_17:9738090-9769219:+|nuORF	REV__ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8724975585938	2	633.869497	1265.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.886	1	93.886	93.386	94.386	0								0	0	0	0.33711	1	23685	23685		3.5965	0.31518	1		+		24087	8099	15899	16056	32625	32625					0.10220760451034039
WLSEGDFDFF	10	Unmodified	_WLSEGDFDFF_					0	0	0		ENST00000420969.1_1_2:162362657-162362750:-|nuORF	ENST00000420969.1_1_2:162362657-162362750:-|nuORF	ENST00000420969.1_1_2:162362657-162362750:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.51776123046875	3	421.516995	1261.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.48	1	55.48	54.98	55.98	0								0	0	0	0.33877	1	11983	11983		0.69767	0	1				24088	6451	15900	16057	32626	32626					-0.091148748644855
WLSQTTSNQL	10	Unmodified	_WLSQTTSNQL_					0	0	0			REV__ENSG00000134061|ENST00000256447|CD180	REV__ENSG00000134061|ENST00000256447|CD180	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3011474609375	2	589.296027	1176.5775	0.27171	0.00016012	3.5167	0.0020724	3.7884	0.0022325	589.2983155545879	39.599	0.88888	39.687	39.455	40.343	0.088562					57	34	3	0	0	0	0.46208	1	7225	7225		2.4985	0.65425	1	78412	+		24089	9159	15901	16058	32627	32627					-0.00372381224565288
WLTKKYLIRWL	11	Unmodified	_WLTKKYLIRWL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.30908203125	3	507.309773	1518.90749	0.51272	0.00026011	-0.20318	-0.00010308	0.30954	0.00015703	507.3094770203229	97.999	0.52361	98.04	97.801	98.324	0.040855					57	26	3	0	0	0	0.41892	1	24760	24760		0	0	1	72644	+		24090	10866	15902	16059	32628	32628					0.16879314512834753
WLTKKYLIRWL	11	Unmodified	_WLTKKYLIRWL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.75274658203125	3	507.309773	1518.90749	0.51272	0.00026011	-0.20318	-0.00010308	0.30954	0.00015703	507.3094770203229	97.999	0.52361	98.04	97.801	98.324	0.040855					57	26	3	0	0	0	0.31102	1	24846	24846		0	0	1	72644	+		24091	10866	15902	16059	32629	32629					0.16879314512834753
WLTRHPLY	8	Unmodified	_WLTRHPLY_					0	0	0			REV__ENST00000488482.1_1_10:91403553-91403664:-|nuORF	REV__ENST00000488482.1_1_10:91403553-91403664:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7457275390625	2	543.298176	1084.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.936	1	59.936	59.436	60.436	0								0	0	0	0.38822	1	13337	13337		2.8892	0.31174	1		+		24092	12135	15903	16060	32630	32630					0.042891727796586565
WLTVEGVPFF	10	Unmodified	_WLTVEGVPFF_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8125610351562	2	597.813325	1193.6121	-0.51833	-0.00030987	-0.081575	-4.8767E-05	-0.59991	-0.00035863	597.813574678419	41.221	0.3846	41.221	41.075	41.459	0					19	13	2	0	0	0	0.46554	1	7694	7694		1.8442	0	1	45164			24093	1078	15904	16061	32631	32631					0.02303486654182052
WLWCHGGAAIF	11	Unmodified	_WLWCHGGAAIF_					0	0	0		ENST00000609742.2_1_10:33177235-33177406:-|nuORF	ENST00000609742.2_1_10:33177235-33177406:-|nuORF	ENST00000609742.2_1_10:33177235-33177406:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.8034057617188	2	630.802768	1259.59098	0.56803	0.00035831	0.95258	0.00060089	1.5206	0.0009592	630.8035662637815	92.637	0.57443	92.674	92.452	93.027	0.03653					53	20	4	0	0	0	0.38944	1	23215	23215		6.7232	0.51738	1	543700			24094	7326	15905	16062	32632	32632					-0.028428019263174065
WLWCHGGAAIF	11	Unmodified	_WLWCHGGAAIF_					0	0	0		ENST00000609742.2_1_10:33177235-33177406:-|nuORF	ENST00000609742.2_1_10:33177235-33177406:-|nuORF	ENST00000609742.2_1_10:33177235-33177406:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	630.802768	1259.59098	0.44282	0.00027933	1.2072	0.00076151	1.65	0.0010408	630.8035554056737	92.688	0.62076	92.688	92.458	93.078	0	0.0069556	0.00015194	NaN	6.7232	67	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604810			24095	7326	15905	16062							-0.028428019263174065
WLWLLFAVV	9	Unmodified	_WLWLLFAVV_					0	0	0		ENSG00000213714|ENST00000371325|FAM209B	ENSG00000213714|ENST00000371325|FAM209B	ENSG00000213714|ENST00000371325|FAM209B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.8362426757812	2	573.839146	1145.66374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.716	1	44.803	44.303	45.303	0.08754								0	0	0	0.28409	1	8588	8588		2.3027	0	1				24096	5553	15906	16063	32633	32633					0.09673275138720783
WLWQTGLLP	9	Unmodified	_WLWQTGLLP_					0	0	0			REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF	REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8109741210938	2	557.30821	1112.60187	0.52217	0.00029101	0.11891	6.6269E-05	0.64108	0.00035728	557.3080102304376	73.493	0.50098	73.546	73.379	73.88	0.052574					34	19	2	0	0	0	0.31136	1	17392	17392		5.2307	0	1	144890	+		24097	11825	15907	16064	32634	32634					0.050069237196112226
WLWQTGLLP	9	Unmodified	_WLWQTGLLP_					0	0	0			REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF	REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3084106445312	2	557.30821	1112.60187	0.52217	0.00029101	0.11891	6.6269E-05	0.64108	0.00035728	557.3080102304376	73.493	0.50098	73.546	73.379	73.88	0.052574					34	19	2	0	0	0	0.22289	1	17326	17326		18.135	3.2967	1	144890	+		24098	11825	15907	16064	32635	32635					0.050069237196112226
WLWTARHPH	9	Unmodified	_WLWTARHPH_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8779296875	3	401.877192	1202.60975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.034	1	26.126	25.626	26.626	0.091507								0	0	0	0.29233	1	3017	3017		0.26902	0.033176	1				24099	6284	15908	16065	32636	32636					0.016544957597488974
WLYHSCLSC	9	Unmodified	_WLYHSCLSC_					0	0	0			REV__ENST00000481546.1_1_21:46191294-46193735:-|nuORF	REV__ENST00000481546.1_1_21:46191294-46193735:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2408447265625	2	556.238612	1110.46267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.004	1	26.096	25.596	26.596	0.091507								0	0	0	0.28631	1	3008	3008		1.8442	0.19162	1		+		24100	12091	15909	16066	32637	32637					-0.08814105231726899
WLYSVPWGF	9	Unmodified	_WLYSVPWGF_					0	0	0		nc|ENSG00000188501|Q6UWM7-2|LCTL;ENSG00000188501|ENST00000695545|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7850952148438	2	577.78711	1153.55967	0.16086	9.2943E-05	-1.7882	-0.0010332	-1.6273	-0.00094025	577.7856619559439	71.906	0.96864	71.906	71.53	72.499	0					58	33	3	0	0	0	0.16036	2	16991	16991;17038		23.148	9.2424	1	507810			24101	5157	15910	16067	32638;32639	32638					-0.010970516887709891
WLYSVPWGF	9	Unmodified	_WLYSVPWGF_					0	0	0		nc|ENSG00000188501|Q6UWM7-2|LCTL;ENSG00000188501|ENST00000695545|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7850341796875	2	577.78711	1153.55967	0.22795	0.00013171	-2.7225	-0.001573	-2.4945	-0.0014413	577.7854060464824	71.777	0.69697	71.833	71.677	72.374	0.055939					45	24	3	0	0	0	0.16036	2	16811	16811;16866		23.148	6.2061	1	587800			24102	5157	15910	16067	32640;32641	32640					-0.010970516887709891
WLYVTSSVH	9	Unmodified	_WLYVTSSVH_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1	REV__nc|ENSG00000075651|Q13393-3|PLD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7695922851562	2	546.279649	1090.54475	-0.057996	-3.1682E-05	-2.6427	-0.0014436	-2.7007	-0.0014753	546.2778424733842	31.07	0.40376	31.144	30.964	31.368	0.073782					29	20	3	0	0	0	0.25845	1	4551	4551		2.0598	0.21551	1	35284	+		24103	8199	15911	16068	32642	32642					0.003094564432331026
WMDAMSPAI	9	Unmodified	_WMDAMSPAI_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2288513183594	2	511.227713	1020.44087	0.061834	3.1611E-05	2.9737	0.0015202	3.0355	0.0015518	511.22886362746857	45.768	0.40732	45.854	45.67	46.077	0.085617					27	16	2	0	0	0	0.29105	1	8920	8920		7.9102	0.62092	1	57313	+		24104	10656	15912	16069	32643	32643					-0.06852909980307231
WMGWKDRW	8	Unmodified	_WMGWKDRW_					0	0	0		nc|ENSG00000204580|Q08345-4|DDR1;ENST00000431373.1_1_6:30853540-30859007:+|nuORF;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-4|DDR1	nc|ENSG00000204580|Q08345-4|DDR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.298583984375	2	582.774011	1163.53347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.54	1	100.58	100.08	101.08	0.042839								0	0	0	0.38822	1	25556	25556		2.3027	0.24298	1				24105	5480	15913	16070	32644	32644					-0.04175644131896661
WMLIAGTEYF	10	Unmodified	_WMLIAGTEYF_					0	0	0		CMTM8|p.T57M|1|0.26|ENSG00000170293|chr3:32357395-32357395|C/T|missense_variant	CMTM8|p.T57M|1|0.26|ENSG00000170293|chr3:32357395-32357395|C/T|missense_variant	CMTM8|p.T57M|1|0.26|ENSG00000170293|chr3:32357395-32357395|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	410.1961975097656	3	410.86697	1229.57908	0.53471	0.00021969	-0.70377	-0.00028916	-0.16907	-6.9464E-05	411.1995825028193	62.193	0.65459	62.193	61.737	62.392	0					29	25	2	0	0	0	0.31837	1	13938	13938		1.9064	0	1	85007			24106	202	15914	16071	32645	32645					-0.026524634601855723
WMMGLNQGL	9	Unmodified	_WMMGLNQGL_					0	0	0			REV__nc|ENSG00000073670|O75078-2|ADAM11	REV__nc|ENSG00000073670|O75078-2|ADAM11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2647094726562	2	525.24898	1048.48341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.688	1	25.688	25.188	26.188	0								0	0	0	0.28631	1	3045	3045		1.8442	0	1		+		24107	8178	15915	16072	32646	32646					-0.038895148520396106
WMRFALAV	8	Unmodified	_WMRFALAV_					0	0	0			REV__ENSG00000154485|ENST00000368808|MMP21	REV__ENSG00000154485|ENST00000368808|MMP21	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.3072814941406	2	497.270573	992.526593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.368	1	89.368	88.868	89.868	0								0	0	0	0.38822	1	22310	22310		2.8892	0.58649	1		+		24108	9714	15916	16073	32647	32647					0.03003042987529625
WMRLPWQIVK	10	Unmodified	_WMRLPWQIVK_					0	0	0			REV__ENST00000419886.6_1_19:12129079-12146462:-|nuORF	REV__ENST00000419886.6_1_19:12129079-12146462:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2510986328125	3	452.925154	1355.75363	-0.21523	-9.7481E-05	-1.4285	-0.00064699	-1.6437	-0.00074447	453.2596337161958	28.565	0.11907	28.647	28.55	28.669	0.082134					8	6	2	0	0	0	0.47119	1	3739	3739		0.77653	0.078866	1	8626.3	+		24109	11811	15917	16074	32648	32648					0.08998581475657375
WMYFYEYE	8	Unmodified	_WMYFYEYE_					0	0	0		ENSG00000169255|ENST00000320474|B3GALNT1	ENSG00000169255|ENST00000320474|B3GALNT1	ENSG00000169255|ENST00000320474|B3GALNT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.7442626953125	2	615.74425	1229.47395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.935	1	19.935	19.435	20.435	0								0	0	0	0.38822	1	1473	1473		0	0	1				24110	4332	15918	16075	32649	32649					-0.13161004656603836
WNAWPPFIY	9	Unmodified	_WNAWPPFIY_					0	0	0			REV__nc|ENSG00000103546|P23975-3|SLC6A2	REV__nc|ENSG00000103546|P23975-3|SLC6A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2918701171875	2	597.292559	1192.57057	0.61682	0.00036842	-3.9735	-0.0023733	-3.3567	-0.0020049	597.2900272404696	65.82	0.52776	65.82	65.578	66.106	0					22	18	2	0	0	0	0.24365	1	15156	15156		13.508	4.1248	1	143100	+		24111	8484	15919	16076	32650	32650					-0.01801649314484166
WNCEFILSF	9	Unmodified	_WNCEFILSF_					0	0	0		ENST00000445273.6_1_13:31711130-31711382:-|nuORF	ENST00000445273.6_1_13:31711130-31711382:-|nuORF	ENST00000445273.6_1_13:31711130-31711382:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7680053710938	2	579.76806	1157.52157	0.37644	0.00021825	-0.63686	-0.00036923	-0.26042	-0.00015098	579.7678389231191	91.494	0.80025	91.529	91.11	91.91	0.035446					44	28	2	0	0	0	0.18759	1	22782	22782		27.629	4.9707	1	133640			24112	6539	15920	16077	32651	32651					-0.050893056657514535
WNFLFEEPGLG	11	Unmodified	_WNFLFEEPGLG_					0	0	0		ENST00000373204.5_1_1:36387027-36387114:+|nuORF	ENST00000373204.5_1_1:36387027-36387114:+|nuORF	ENST00000373204.5_1_1:36387027-36387114:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2151184082031	3	436.880156	1307.61864	0.48603	0.00021234	-0.88315	-0.00038583	-0.39712	-0.00017349	437.2145061927884	88.696	1.3969	88.696	88.139	89.536	0					81	55	2	0	0	0	0.4167	1	22224	22224		0.50596	0.23694	1	71179			24113	6224	15921	16078	32652	32652					-0.022866201851002188
WNFLFEEPGLG	11	Unmodified	_WNFLFEEPGLG_					0	0	0		ENST00000373204.5_1_1:36387027-36387114:+|nuORF	ENST00000373204.5_1_1:36387027-36387114:+|nuORF	ENST00000373204.5_1_1:36387027-36387114:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2147216796875	3	436.880156	1307.61864	0.30961	0.00013526	-0.47067	-0.00020562	-0.16106	-7.0363E-05	437.21456165023	103.78	0.92635	103.78	103.61	104.54	0					151	92	2	0	0	0	0.4167	1	26803	26803		0.50596	0.09769	1	170100			24114	6224	15921	16078	32653	32653					-0.022866201851002188
WNHYPVRRY	9	Unmodified	_WNHYPVRRY_					0	0	0			REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	430.8880920410156	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.642	1	86.642	86.142	87.142	0								0	0	0	0.29394	1	21485	21485		0.26902	0	1		+		24115	8717	15922	16079	32654	32654					0.00853863442898728
WNIYRRYTEF	10	Unmodified	_WNIYRRYTEF_					0	0	0		MGRN1-SNX29|1|fusion;nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	MGRN1-SNX29|1|fusion	MGRN1-SNX29|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.2646789550781	3	483.242088	1446.70443	0.17184	8.304E-05	0.035087	1.6956E-05	0.20693	9.9996E-05	483.5762610753968	47.354	0.57249	47.437	47.244	47.816	0.083096					46	22	4	0	0	0	0.47161	1	9350	9350		0.69767	0.19171	1	90119			24116	567	15923	16080	32655	32655					-0.0010503527960281644
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3775634765625	2	634.378355	1266.74216	-0.172	-0.00010911	-0.99734	-0.00063269	-1.1693	-0.0007418	634.3778652490715	113.67	0.24229	113.67	113.6	113.85	0					89	35	3	0	0	0	0.46746	1	29112	29112		1.4819	0	1	375340			24117	7192	15924	16081	32656	32656					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3778076171875	2	634.378355	1266.74216	-0.17333	-0.00010996	-1.2054	-0.00076468	-1.3787	-0.00087464	634.3778624351135	113.98	0.11411	113.98	113.91	114.03	0					23	15	2	0	0	0	0.46746	1	29144	29144		1.4819	0	1	179370			24118	7192	15924	16081	32657	32657					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3784790039062	2	634.378355	1266.74216	-0.17277	-0.0001096	-1.6944	-0.0010749	-1.8671	-0.0011845	634.8782482948124	114.3	0.074036	114.3	114.26	114.34	0					17	10	2	0	0	0	0.47318	1	29206	29206		0.40072	0	1	60697			24119	7192	15924	16081	32658	32658					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3787231445312	2	634.378355	1266.74216	-0.17304	-0.00010977	-1.12	-0.00071053	-1.2931	-0.00082031	634.3782477664312	114.56	0.22652	114.56	114.44	114.67	0					56	30	2	0	0	0	0.47318	2	29237	29237;29267		0.40072	0	1	60593			24120	7192	15924	16081	32659;32660	32659					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8778076171875	2	634.378355	1266.74216	0.24948	0.00015827	-1.6106	-0.0010217	-1.3611	-0.00086344	634.3778194355086	108.96	0.24014	108.98	108.9	109.14	0.019402					70	36	2	0	0	0	0.46746	1	27851	27851		1.4819	0	1	2339600			24121	7192	15924	16081	32661	32661					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3779907226562	2	634.378355	1266.74216	0.24958	0.00015833	-1.4316	-0.00090815	-1.182	-0.00074982	634.3779571814482	113.64	0.047287	113.66	113.62	113.67	0.013817					10	5	2	0	0	0	0.46746	1	28979	28979		1.4819	0	1	176350			24122	7192	15924	16081	32662	32662					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3779907226562	2	634.378355	1266.74216	0.24799	0.00015732	-0.55599	-0.00035271	-0.308	-0.00019539	634.377876368881	113.8	0.27718	113.81	113.62	113.9	0.013336					79	39	3	0	0	0	0.46746	1	29002	29002		1.4819	0	1	226340			24123	7192	15924	16081	32663	32663					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	634.378355	1266.74216	-0.17307	-0.00010979	-1.5682	-0.00099485	-1.7413	-0.0011046	634.3775346764095	113.89	0.04715	113.89	113.86	113.91	0	0.039291	-0.00030074	NaN	1.4819	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60129			24124	7192	15924	16081							0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	634.378355	1266.74216	0.24798	0.00015731	-1.5929	-0.0010105	-1.345	-0.00085322	634.3775134363983	113.91	0.047798	113.93	113.9	113.95	0.013336	-0.023798	-0.00036377	NaN	1.4819	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56950			24125	7192	15924	16081							0.1194552049653339
WNPTLSAESVR	11	Unmodified	_WNPTLSAESVR_					0	0	0		ENST00000264963.8_2_2:97371867-97372074:-|nuORF	ENST00000264963.8_2_2:97371867-97372074:-|nuORF	ENST00000264963.8_2_2:97371867-97372074:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3239135742188	2	630.322576	1258.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.105	1	68.169	67.669	68.669	0.063507								0	0	0	0.32709	1	15676	15676		5.2969	2.0156	1				24126	5891	15925	16082	32664	32664					0.011629965580596036
WNWCFHLML	9	Unmodified	_WNWCFHLML_					0	0	0			REV__TAS1R2|p.R202C|1|0.37|ENSG00000179002|chr1:18854866-18854866|G/A|missense_variant	REV__TAS1R2|p.R202C|1|0.37|ENSG00000179002|chr1:18854866-18854866|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.7854614257812	2	625.285897	1248.55724	0.35255	0.00022045	0.64929	0.00040599	1.0018	0.00062644	625.2861386244357	102.46	0.14317	102.5	102.41	102.55	0.040909					10	8	2	0	0	0	0.25989	1	26135	26135		0.52476	0	1	39334	+		24127	13023	15926	16083	32665	32665					-0.05709546689740819
WPALEDLVL	9	Unmodified	_WPALEDLVL_					0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.292236328125	2	528.292225	1054.5699	0.51399	0.00027154	-0.11023	-5.8236E-05	0.40376	0.0002133	528.2920161828648	97.294	0.41856	97.294	97.02	97.438	0					61	18	4	0	0	0	0.18364	1	24741	24741		20.454	3.5113	1	2584000			24128	788	15927	16084	32666	32666					0.044795112457904906
WPALEDLVL	9	Unmodified	_WPALEDLVL_					0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2926025390625	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.49	1	97.49	96.99	97.99	0								0	0	0	0.18435	1	24782	24782		20.454	1.1966	1				24129	788	15927	16084	32667	32667					0.044795112457904906
WPALEDLVL	9	Unmodified	_WPALEDLVL_					0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2923583984375	2	528.292225	1054.5699	0.55343	0.00029238	2.0051	0.0010593	2.5586	0.0013517	528.2920024550718	97.325	0.95636	97.366	97.076	98.033	0.040855					192	47	6	0	0	0	0.14091	1	24599	24599		25.399	6.1423	1	2244400			24130	788	15927	16084	32668	32668					0.044795112457904906
WPCANFQR	8	Unmodified	_WPCANFQR_					0	0	0			REV__ENSG00000198133|ENST00000554480|TMEM229B	REV__ENSG00000198133|ENST00000554480|TMEM229B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2565002441406	2	511.237261	1020.45997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.956	1	32.956	32.456	33.456	0								0	0	0	0.38822	1	5175	5175		4.756	0.81161	1		+		24131	10885	15928	16085	32669	32669					-0.04944192574373574
WPDDLQNHTF	10	Unmodified	_WPDDLQNHTF_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.28857421875	2	636.785827	1271.5571	-0.19559	-0.00012455	0.83787	0.00053355	0.64228	0.000409	636.7867712977833	58.864	0.46626	58.864	58.572	59.038	0					34	16	3	0	0	0	0.093146	1	12980	12980		46.022	28.909	1	217570			24132	5459	15929	16086	32670	32670					-0.06781551884409964
WPDDLQNHTF	10	Unmodified	_WPDDLQNHTF_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.7855834960938	2	636.785827	1271.5571	0.15032	9.5723E-05	0.16644	0.00010599	0.31676	0.00020171	636.7858594622311	58.757	0.41161	58.827	58.533	58.945	0.070477					27	13	3	0	0	0	0.044868	1	12829	12829		59.052	43.804	1	165550			24133	5459	15929	16086	32671	32671					-0.06781551884409964
WPDWALPRL	9	Unmodified	_WPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3115234375	2	577.311284	1152.60801	0.70524	0.00040714	-0.86329	-0.00049839	-0.15805	-9.1244E-05	577.3112986518996	81.986	1.2073	81.986	81.515	82.723	0					117	42	5	0	0	0	0.012041	3	20030	19980;20001;20030		63.961	37.692	1	1028100			24134	3486	15930	16087	32672;32673;32674	32674					0.037814419511278174
WPDWALPRL	9	Unmodified	_WPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3115844726562	2	577.311284	1152.60801	0.41484	0.00023949	-0.72402	-0.00041799	-0.30918	-0.00017849	577.3114776394333	81.983	1.0475	82.005	81.542	82.59	0.021866					124	37	5	0	0	0	0.0045534	2	19880	19832;19880		88.954	54.552	1	1106600			24135	3486	15930	16087	32675;32676	32676					0.037814419511278174
WPEKGQELSS	10	Unmodified	_WPEKGQELSS_					0	0	0			REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28	REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7854614257812	2	580.782753	1159.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.74	1	105.77	105.27	106.27	0.029739								0	0	0	0.33762	1	27064	27064		2.9952	0.69251	1		+		24136	10521	15931	16088	32677	32677					-0.022440701158984666
WPFQGTIRL	9	Unmodified	_WPFQGTIRL_					0	0	0		ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.3106689453125	2	559.311284	1116.60801	0.31508	0.00017623	-0.38308	-0.00021426	-0.068	-3.8033E-05	559.3109469037014	71.956	0.4836	72.012	71.812	72.296	0.055939					24	16	2	0	0	0	0.26104	1	16847	16847		11.495	2.1116	1	159980			24137	4611	15932	16089	32678	32678					0.05437441951130495
WPFQGTIRL	9	Unmodified	_WPFQGTIRL_					0	0	0		ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	559.311284	1116.60801	0.14601	8.1663E-05	-0.38514	-0.00021541	-0.23913	-0.00013375	559.3111029670123	72.074	0.48308	72.074	71.834	72.317	0	0.030978	-1.5369E-06	NaN	11.495	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179430			24138	4611	15932	16089							0.05437441951130495
WPGHQPQQFI	10	Unmodified	_WPGHQPQQFI_					0	0	0			REV__ENSG00000197586|ENST00000376652|ENTPD6	REV__ENSG00000197586|ENST00000376652|ENTPD6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3082275390625	2	619.309272	1236.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.78	1	103.82	103.32	104.32	0.03791								0	0	0	0.33979	1	26517	26517		0.45834	0	1		+		24139	10864	15933	16090	32679	32679					-0.004846475425893004
WPGMLWIQA	9	Unmodified	_WPGMLWIQA_					0	0	0			REV__ENST00000248142.7_3_16:739618-740018:-|nuORF	REV__ENST00000248142.7_3_16:739618-740018:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2832641601562	2	551.281137	1100.54772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.91	1	103.91	103.41	104.41	0								0	0	0	0.2699	1	26723	26723		5.2307	2.9279	1		+		24140	11206	15934	16091	32680	32680					0.0014700829640332813
WPHEDAAQF	9	Unmodified	_WPHEDAAQF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7435302734375	2	550.743431	1099.47231	0.27857	0.00015342	0.15992	8.8077E-05	0.4385	0.0002415	550.743489334474	49.377	0.68076	49.377	49.169	49.85	0					47	23	3	0	0	0	0.15403	1	10106	10106		34.402	34.402	1	292620			24141	2720	15935	16092	32681	32681					-0.07344877630362134
WPHEDAAQF	9	Unmodified	_WPHEDAAQF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.74365234375	2	550.743431	1099.47231	0.26534	0.00014613	0.15064	8.2965E-05	0.41598	0.0002291	550.7434589105362	49.271	0.56541	49.348	49.155	49.721	0.076607					42	19	3	0	0	0	0.0569	1	9962	9962		41.84	41.84	1	299700			24142	2720	15935	16092	32682	32682					-0.07344877630362134
WPIEGEEL	8	Unmodified	_WPIEGEEL_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7372131347656	2	486.737283	971.460012	-0.12778	-6.2194E-05	0.53898	0.00026234	0.4112	0.00020015	486.73745956100925	72.027	0.99815	72.027	71.584	72.582	0					61	34	2	0	0	0	0.49441	1	16983	16983		13.508	0	1	190080	+		24143	10929	15936	16093	32683	32683					-0.026859140933765957
WPIEGEEL	8	Unmodified	_WPIEGEEL_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.736572265625	2	486.737283	971.460012	-0.038034	-1.8512E-05	0.38131	0.0001856	0.34328	0.00016709	486.7373642261601	71.981	1.0002	72.036	71.566	72.566	0.055939					58	35	2	0	0	0	0.45077	1	16879	16879		19.439	0	1	161740	+		24144	10929	15936	16093	32684	32684					-0.026859140933765957
WPIIDGHR	8	Unmodified	_WPIIDGHR_					0	0	0			REV__ENSG00000181027|ENST00000318584|FKRP	REV__ENSG00000181027|ENST00000318584|FKRP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2666015625	2	497.266876	992.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.644	1	39.644	39.144	40.144	0								0	0	0	0.38822	1	7186	7186		2.5775	0	1		+		24145	10523	15937	16094	32685	32685					0.022640267114638846
WPISCRKIRV	10	Unmodified	_WPISCRKIRV_					0	0	0		ENST00000267101.7_1_12:56473655-56474027:+|nuORF	ENST00000267101.7_1_12:56473655-56474027:+|nuORF	ENST00000267101.7_1_12:56473655-56474027:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.3501586914062	2	629.366067	1256.71758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.099	1	19.189	18.689	19.689	0.089705								0	0	0	0.33984	1	1195	1195		0.40072	0	1				24146	5905	15938	16095	32686	32686					0.09949124298782408
WPLEEVVLL	9	Unmodified	_WPLEEVVLL_					0	0	0		nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.3159790039062	2	549.3157	1096.61685	0.62626	0.00034401	0.057285	3.1467E-05	0.68354	0.00037548	549.3155777934431	98.374	0.46507	98.374	98.155	98.62	0					61	23	4	0	0	0	0.21398	3	25055	25016;25055;25099		16.942	3.0362	1	751780			24147	7464	15939	16096	32687;32688;32689	32688					0.07240370796944262
WPLEEVVLL	9	Unmodified	_WPLEEVVLL_					0	0	0		nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.3159790039062	2	549.3157	1096.61685	0.64448	0.00035402	0.042833	2.3529E-05	0.68731	0.00037755	549.3155889400916	98.372	0.33798	98.414	98.124	98.462	0.041939					41	15	3	0	0	0	0.21398	2	24857	24857;24901		16.942	1.0951	1	421520			24148	7464	15939	16096	32690;32691	32690					0.07240370796944262
WPLHTSSLTI	10	Unmodified	_WPLHTSSLTI_					0	0	0			REV__tr|U7SYD6|U7SYD6_FUSNUGlutamateracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00977PE=4SV=1	REV__tr|U7SYD6|U7SYD6_FUSNUGlutamateracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00977PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.8131103515625	2	577.813856	1153.61316	0.55392	0.00032006	-0.89233	-0.0005156	-0.33841	-0.00019554	577.813028779081	69.492	0.49942	69.492	69.319	69.818	0					34	16	3	0	0	0	0.38104	1	16271	16271		13.906	0	1	146810	+		24149	13233	15940	16097	32692	32692					0.04249701023081798
WPLHTSSLTI	10	Unmodified	_WPLHTSSLTI_					0	0	0			REV__tr|U7SYD6|U7SYD6_FUSNUGlutamateracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00977PE=4SV=1	REV__tr|U7SYD6|U7SYD6_FUSNUGlutamateracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00977PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	577.813856	1153.61316	0.55392	0.00032006	-0.89233	-0.0005156	-0.33841	-0.00019554	577.813028779081	69.492	0.49942	69.492	69.319	69.818	0	0.0013007	0.00013726	NaN	13.906	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146810	+		24150	13233	15940	16097							0.04249701023081798
WPLKDLTL	8	Unmodified	_WPLKDLTL_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.28955078125	2	493.289485	984.564418	0.61098	0.00030139	-0.067945	-3.3517E-05	0.54303	0.00026787	493.28921748181693	69.92	0.74519	69.92	69.761	70.506	0					41	27	3	0	0	0	0.30285	3	16380	16380;16426;16468		34.402	15.145	1	178080			24151	4731	15941	16098	32693;32694;32695	32693					0.07151832453973839
WPLKDLTL	8	Unmodified	_WPLKDLTL_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.2896423339844	2	493.289485	984.564418	0.44923	0.0002216	-0.17859	-8.8096E-05	0.27064	0.00013351	493.2893754726582	69.967	0.5619	70.028	69.695	70.257	0.060562					39	23	2	0	0	0	0.30285	2	16209	16209;16253		34.402	15.145	1	114200			24152	4731	15941	16098	32696;32697	32696					0.07151832453973839
WPLPCRAPL	9	Unmodified	_WPLPCRAPL_					0	0	0			REV__ENSG00000181652|ENST00000639579|ATG9B	REV__ENSG00000181652|ENST00000639579|ATG9B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7777709960938	2	526.78913	1051.56371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.008	1	24.107	23.607	24.607	0.099739								0	0	0	0.28527	1	2442	2442		2.0598	0.21551	1		+		24153	10536	15942	16099	32698	32698					0.03998714533304337
WPLPPDWPL	9	Unmodified	_WPLPPDWPL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.79541015625	2	560.794935	1119.57532	0.49748	0.00027898	0.05517	3.0939E-05	0.55265	0.00030992	560.7947520143136	99.816	0.87034	99.816	99.798	100.67	0					71	48	2	0	0	0	0.17247	4	25509	25509;25567;25611;25650		21.747	4.8044	1	240300			24154	4768	15943	16100	32699;32700;32701;32702	32699					0.0203123482826868
WPLPPDWPL	9	Unmodified	_WPLPPDWPL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.2963256835938	2	560.794935	1119.57532	0.61248	0.00034347	-0.021196	-1.1887E-05	0.59128	0.00033159	560.7949106968013	99.865	0.69669	99.908	99.791	100.49	0.042839					61	38	2	0	0	0	0.17247	4	25345	25345;25415;25458;25504		21.747	4.8044	1	250810			24155	4768	15943	16100	32703;32704;32705;32706	32703					0.0203123482826868
WPLPPDWPL	9	Unmodified	_WPLPPDWPL_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	560.794935	1119.57532	0.62845	0.00035243	-0.37669	-0.00021125	0.25176	0.00014118	560.794651798564	99.509	0.23694	99.552	99.383	99.62	0.042831	-0.13188	-0.00039885	NaN	21.747	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103110			24156	4768	15943	16100							0.0203123482826868
WPLPPDWPLP	10	Unmodified	_WPLPPDWPLP_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.3214111328125	2	609.321317	1216.62808	0.40599	0.00024738	-0.28233	-0.00017203	0.12366	7.5351E-05	609.3210124836885	101.77	1.5546	101.77	101.07	102.63	0					144	105	2	0	0	0	0.38912	3	26090	26036;26090;26136		13.042	6.1018	1	256680			24157	4768	15944	16101	32707;32708;32709	32708					0.02843192891077706
WPLPPDWPLP	10	Unmodified	_WPLPPDWPLP_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3214111328125	2	609.321317	1216.62808	0.6102	0.00037181	-0.45856	-0.00027941	0.15164	9.2396E-05	609.3209264623101	101.65	1.3866	101.7	101.05	102.44	0.042656					238	103	3	0	0	0	0.34138	2	25930	25880;25930		18.146	11.941	1	202100			24158	4768	15944	16101	32710;32711	32711					0.02843192891077706
WPLWRKMI	8	Unmodified	_WPLWRKMI_					0	0	0			REV__ENST00000409333.1_1_2:170657480-170662026:+|nuORF	REV__ENST00000409333.1_1_2:170657480-170662026:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7343139648438	2	565.320597	1128.62664	-0.18004	-0.00010178	-1.652	-0.0009339	-1.832	-0.0010357	565.8206773084659	29.996	0.39658	29.996	29.799	30.196	0					26	16	3	0	0	0	0.3576	1	4270	4270		0.69038	0	1	19472	+		24159	11774	15945	16102	32712	32712					0.06747280321314975
WPMDFIVI	8	Unmodified	_WPMDFIVI_					0	0	0			REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2	REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.76654052734375	2	510.764789	1019.51502	0.7794	0.00039809	2.7018	0.00138	3.4812	0.0017781	510.76625529440366	84.748	0.47072	84.748	84.544	85.014	0					30	21	2	0	0	0	0.48651	1	20929	20929		14.582	2.0501	1	151750	+		24160	9047	15946	16103	32713	32713					0.006048011735288128
WPMDFIVI	8	Unmodified	_WPMDFIVI_					0	0	0			REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2	REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7842712402344	2	510.764789	1019.51502	0.54568	0.00027871	2.5431	0.0012989	3.0888	0.0015777	510.76618055655484	84.677	0.33321	84.7	84.617	84.95	0.023132					27	17	2	0	0	0	0.53345	1	20786	20786		5.7604	0.52976	1	267640	+		24161	9047	15946	16103	32714	32714					0.006048011735288128
WPPFQDLPL	9	Unmodified	_WPPFQDLPL_					0	0	0		nc|ENSG00000168310|P14316-2|IRF2;ENSG00000168310|ENST00000393593|IRF2	nc|ENSG00000168310|P14316-2|IRF2	nc|ENSG00000168310|P14316-2|IRF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.792236328125	2	556.792392	1111.57023	0.71628	0.00039882	0.57351	0.00031932	1.2898	0.00071814	556.7925804333909	93.51	0.41562	93.547	93.22	93.635	0.037369					33	17	2	0	0	0	0.098463	1	23383	23383		32.786	14.639	1	207500			24162	4279	15947	16104	32715	32715					0.01890930965669213
WPPWPPLLFL	10	Unmodified	_WPPWPPLLFL_					0	0	0		ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.23773193359375	3	422.574227	1264.70085	-0.19474	-8.2294E-05	-0.52633	-0.00022241	-0.72107	-0.00030471	422.9080115344588	24.721	0.11314	24.817	24.727	24.84	0.096073					11	9	2	0	0	0	0.31856	1	2636	2636		0.15932	0	1	11882			24163	5541	15948	16105	32716	32716					0.0790894668450619
WPSLLGDML	9	Oxidation (M)	_WPSLLGDM(Oxidation (M))L_		WPSLLGDM(1)L		WPSLLGDM(52)L	0	0	1		nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF	nc|ENSG00000140287|P19113-2|HDC	nc|ENSG00000140287|P19113-2|HDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.2625732421875	2	524.26261	1046.51067	0.4226	0.00022156	-0.28298	-0.00014836	0.13962	7.3197E-05	524.2623268105965	88.265	1.1987	88.265	87.855	89.053	0					110	46	3	0	0	0	0.028398	2	21925	21925;21977		52.268	28.011	1	373990			24164	3002	15949	16106	32717;32718	32717		196			-0.010727080400329214
WPSLLGDML	9	Oxidation (M)	_WPSLLGDM(Oxidation (M))L_		WPSLLGDM(1)L		WPSLLGDM(52)L	0	0	1		nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF	nc|ENSG00000140287|P19113-2|HDC	nc|ENSG00000140287|P19113-2|HDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.2622680664062	2	524.26261	1046.51067	0.24024	0.00012595	-0.036376	-1.907E-05	0.20387	0.00010688	524.2623863712389	88.173	1.2625	88.203	87.823	89.085	0.030037					111	49	3	0	0	0	0.028398	1	21752	21752		52.268	30.522	1	371250			24165	3002	15949	16106	32719	32719		196			-0.010727080400329214
WPSWLLPF	8	Unmodified	_WPSWLLPF_					0	0	0		ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3038940429688	2	523.278921	1044.54329	0.81285	0.00042535	-3.8501	-0.0020147	-3.0372	-0.0015893	523.7795286111633	80.376	0.31442	80.376	80.228	80.543	0					24	10	3	0	0	0	0.35759	1	19629	19629		10.183	0.83596	1	143100			24166	4974	15950	16107	32720	32720					0.02279867145125536
WPTHEVVL	8	Unmodified	_WPTHEVVL_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.7744445800781	2	490.763635	979.512717	0.44881	0.00022026	-0.045159	-2.2162E-05	0.40365	0.0001981	490.76362077928985	55.219	0.60664	55.284	55.068	55.674	0.065128					49	22	3	0	0	0	0.46036	1	11800	11800		18.135	1.1927	1	298890			24167	836	15951	16108	32721	32721					0.022140887600926362
WPTLSISTL	9	Unmodified	_WPTLSISTL_					0	0	0		ENSG00000118402|ENST00000369816|ELOVL4	ENSG00000118402|ENST00000369816|ELOVL4	ENSG00000118402|ENST00000369816|ELOVL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.80401611328125	2	509.2844	1016.55425	0.27003	0.00013752	0.55898	0.00028468	0.829	0.0004222	509.2842295552653	79.033	0.52784	79.033	78.815	79.342	0					41	17	3	0	0	0	0.22344	1	19239	19239		15.847	4.2069	1	319110			24168	2037	15952	16109	32722	32722					0.04663224728756177
WPTLTLKSMS	10	Unmodified	_WPTLTLKSMS_					0	0	0			REV__nc|ENSG00000088812|O75882-3|ATRN	REV__nc|ENSG00000088812|O75882-3|ATRN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7700805664062	2	582.310092	1162.60563	0.17197	0.00010014	1.0307	0.00060017	1.2026	0.00070031	582.3108630014568	58.488	0.24983	58.488	58.256	58.506	0					13	9	2	0	0	0	0.31712	1	12847	12847		6.7232	0	1	102340	+		24169	8288	15953	16110	32723	32723					0.03083225431169012
WPTRLSRT	8	Unmodified	_WPTRLSRT_					0	0	0		nc|ENSG00000170476|Q8WU39-3|MZB1;ENST00000417694.6_1_5:138723456-138724322:-|nuORF;ENST00000503481.5_1_5:138723456-138725442:-|nuORF;ENSG00000170476|ENST00000302125|MZB1	nc|ENSG00000170476|Q8WU39-3|MZB1	nc|ENSG00000170476|Q8WU39-3|MZB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7850646972656	2	508.785433	1015.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.455	1	43.544	43.044	44.044	0.088924								0	0	0	0.38822	1	8209	8209		2.0598	0	1				24170	4397	15954	16111	32724	32724					0.04915698257229906
WPVDLVEKL	9	Unmodified	_WPVDLVEKL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8131713867188	2	549.813325	1097.6121	0.20672	0.00011366	0.1282	7.0486E-05	0.33492	0.00018414	549.8133903639466	73.729	1.4638	73.729	73.446	74.91	0					153	53	5	0	0	0	3.4205E-07	1	17519	17519		128.93	67.575	1	6461100			24171	1204	15955	16112	32725	32725					0.06719486654174034
WPVDLVEKL	9	Unmodified	_WPVDLVEKL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.8135986328125	2	549.813325	1097.6121	0.44456	0.00024443	-0.048569	-2.6704E-05	0.396	0.00021772	549.8132950069024	73.652	1.5306	73.705	73.42	74.951	0.052567					152	56	5	0	0	0	3.4205E-07	1	17376	17376		128.93	128.93	1	5535900			24172	1204	15955	16112	32726	32726					0.06719486654174034
WPVGGDSRF	9	Unmodified	_WPVGGDSRF_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7493591308594	2	510.748516	1019.48248	0.16842	8.6022E-05	0.52957	0.00027048	0.698	0.0003565	510.7488104920456	52.163	1.0451	52.163	51.743	52.788	0					76	36	3	0	0	0	0.10543	2	10921	10921;11023		31.268	14.182	1	163300			24173	3077	15956	16113	32727;32728	32727					-0.026482699051030067
WPVGGDSRF	9	Unmodified	_WPVGGDSRF_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7489013671875	2	510.748516	1019.48248	0.26086	0.00013323	0.25295	0.00012919	0.51381	0.00026243	510.74854369138234	52.043	0.84088	52.11	51.707	52.548	0.067173					76	31	3	0	0	0	0.14444	3	10757	10757;10806;10899		24.991	13.876	1	160020			24174	3077	15956	16113	32729;32730;32731	32729					-0.026482699051030067
WPVTDLLL	8	Unmodified	_WPVTDLLL_					0	0	0			REV__nc|ENSG00000124155|Q969N2-2|PIGT	REV__nc|ENSG00000124155|Q969N2-2|PIGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7762756347656	2	478.776211	955.537869	0.089621	4.2908E-05	0.18067	8.65E-05	0.27029	0.00012941	478.77617986242217	96.294	0.82213	96.294	96.002	96.824	0					89	38	4	0	0	0	0.49441	1	24476	24476		13.508	0	1	997420	+		24175	8945	15957	16114	32732	32732					0.058321435626680795
WQCLNMFL	8	Unmodified	_WQCLNMFL_					0	0	0			REV__PIH1D2|p.I68M|1|0.3|ENSG00000150773|chr11:112071732-112071732|G/C|missense_variant	REV__PIH1D2|p.I68M|1|0.3|ENSG00000150773|chr11:112071732-112071732|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2943725585938	2	527.746073	1053.47759	0.80185	0.00042318	0.78234	0.00041288	1.5842	0.00083605	527.7464500142916	80.579	1.8961	80.579	80.169	82.066	0					86	65	2	0	0	0	0.35759	1	19917	19917		9.3474	1.4373	1	103470	+		24176	12957	15958	16115	32733	32733					-0.04700613363729644
WQCLNMFL	8	Unmodified	_WQCLNMFL_					0	0	0			REV__PIH1D2|p.I68M|1|0.3|ENSG00000150773|chr11:112071732-112071732|G/C|missense_variant	REV__PIH1D2|p.I68M|1|0.3|ENSG00000150773|chr11:112071732-112071732|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.293701171875	2	527.746073	1053.47759	0.42859	0.00022619	0.58068	0.00030645	1.0093	0.00053264	527.7465371680896	81.291	0.79059	81.313	81.228	82.018	0.021866					34	28	2	0	0	0	0.35713	1	19750	19750		14.582	5.9884	1	116410	+		24177	12957	15958	16115	32734	32734					-0.04700613363729644
WQDFHNIC	8	Unmodified	_WQDFHNIC_					0	0	0		ENST00000513019.5_1_5:141346398-141350410:+|nuORF	ENST00000513019.5_1_5:141346398-141350410:+|nuORF	ENST00000513019.5_1_5:141346398-141350410:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.8173828125	2	531.726726	1061.4389	0.42229	0.00022455	0.86771	0.00046138	1.29	0.00068593	531.7271870918966	82.498	0.38741	82.52	82.347	82.735	0.021744					22	13	2	0	0	0	0.3576	1	20074	20074		2.5775	0.27475	1	109130			24178	6923	15959	16116	32735	32735					-0.08936202673885418
WQGDLLLQL	9	Unmodified	_WQGDLLLQL_					0	0	0			REV__nc|ENSG00000251692|Q96A99-2|PTX4	REV__nc|ENSG00000251692|Q96A99-2|PTX4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.787353515625	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.024	1	69.086	68.586	69.586	0.062126								0	0	0	0.23204	1	15955	15955		13.042	0.51092	1		+		24179	11080	15960	16117	32736	32736					0.052783159944056024
WQGWWHGW	8	Unmodified	_WQGWWHGW_					0	0	0			REV__ENST00000505994.1_1_4:120315985-120316138:-|nuORF	REV__ENST00000505994.1_1_4:120315985-120316138:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7509765625	2	571.751393	1141.48823	0.046387	2.6522E-05	-0.03307	-1.8908E-05	0.013317	7.6139E-06	571.7513552696274	21.534	0.34652	21.636	21.499	21.846	0.10178					60	35	2	0	0	0	0.54199	1	1824	1824		0	0	1	27881	+		24180	12225	15961	16118	32737	32737					-0.0768512660279157
WQLFYRKRELF	11	Unmodified	_WQLFYRKRELF_					0	0	0		ENST00000538212.6_1_7:144345963-144421230:-|nuORF	ENST00000538212.6_1_7:144345963-144421230:-|nuORF	ENST00000538212.6_1_7:144345963-144421230:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2907104492188	3	529.292782	1584.85652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.337	1	22.337	21.837	22.837	0								0	0	0	0.34185	1	2101	2101		0.094841	0	1				24181	7050	15962	16119	32738	32738					0.08748365467977237
WQNRKRHR	8	Unmodified	_WQNRKRHR_					0	0	0		ENST00000493879.5_1_X:119727931-119728081:+|nuORF	ENST00000493879.5_1_X:119727931-119728081:+|nuORF	ENST00000493879.5_1_X:119727931-119728081:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8321533203125	2	590.831572	1179.64859	0.069416	4.1013E-05	1.446	0.00085434	1.5154	0.00089535	590.8323767372631	32.716	0.28111	32.789	32.656	32.937	0.07378					17	13	2	0	0	0	0.54097	1	4993	4993		0.69038	0.088878	1	22861			24182	6821	15963	16120	32739	32739					0.06595221114116612
WQQPHHAL	8	Unmodified	_WQQPHHAL_					0	0	0			REV__ENST00000492950.5_3_1:161130443-161130752:+|nuORF	REV__ENST00000492950.5_3_1:161130443-161130752:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7201232910156	2	508.756675	1015.4988	0.29169	0.0001484	1.1982	0.0006096	1.4899	0.000758	508.75748784082214	46.979	0.33163	47.063	46.937	47.269	0.083096					13	12	2	0	0	0	0.53423	1	9272	9272		5.2307	0.90143	1	35471	+		24183	12158	15964	16121	32740	32740					-0.008331439483413305
WQQQLTALDWI	11	Unmodified	_WQQQLTALDWI_					0	0	0			REV__ENST00000547407.5_1_16:706354-706850:+|nuORF	REV__ENST00000547407.5_1_16:706354-706850:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.9102783203125	3	467.910227	1400.70885	0.041524	1.943E-05	3.2905	0.0015397	3.3321	0.0015591	468.2452449898742	68.897	0.4425	68.959	68.639	69.082	0.062119					51	16	4	0	0	0	0.3947	1	15878	15878		5.5233	1.647	1	229410	+		24184	12421	15965	16122	32741	32741					0.02452429143295376
WQQQLTALDWI	11	Unmodified	_WQQQLTALDWI_					0	0	0			REV__ENST00000547407.5_1_16:706354-706850:+|nuORF	REV__ENST00000547407.5_1_16:706354-706850:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	467.910227	1400.70885	0.39254	0.00018367	2.4107	0.001128	2.8032	0.0013116	467.9099758652891	68.849	0.54478	68.849	68.587	69.132	0	-0.05509	-0.00069683	NaN	5.5233	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171740	+		24185	12421	15965	16122							0.02452429143295376
WQQQLTALDWI	11	Unmodified	_WQQQLTALDWI_					0	0	0			REV__ENST00000547407.5_1_16:706354-706850:+|nuORF	REV__ENST00000547407.5_1_16:706354-706850:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	467.910227	1400.70885	0.041524	1.943E-05	3.2905	0.0015397	3.3321	0.0015591	468.2452449898742	68.897	0.4425	68.959	68.639	69.082	0.062119	0.05509	0.00053828	NaN	5.5233	51	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229410	+		24186	12421	15965	16122							0.02452429143295376
WQRGRKFL	8	Unmodified	_WQRGRKFL_					0	0	0		ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.818359375	2	545.817067	1089.61958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.19	1	119.19	118.69	119.69	0								0	0	0	0.38822	1	30055	30055		0.69038	0	1				24187	4364	15966	16123	32742	32742					0.07835683765142676
WQRHGNLL	8	Unmodified	_WQRHGNLL_					0	0	0		ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7924194335938	2	512.277775	1022.541	-0.16735	-8.5728E-05	-1.5594	-0.00079883	-1.7267	-0.00088455	512.2768504432432	44.664	0.44003	44.664	44.502	44.942	0					35	15	3	0	0	0	0.45077	1	8733	8733		19.439	1.304	1	220110			24188	4932	15967	16124	32743	32743					0.030628314600448903
WQRHGNLL	8	Unmodified	_WQRHGNLL_					0	0	0		ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.27685546875	2	512.277775	1022.541	0.033901	1.7367E-05	-1.6336	-0.00083685	-1.5997	-0.00081948	512.276898673573	44.588	0.47801	44.676	44.51	44.988	0.087543					36	17	3	0	0	0	0.52924	1	8533	8533		8.5933	1.304	1	176840			24189	4932	15967	16124	32744	32744					0.030628314600448903
WQRSLDEIT	9	Unmodified	_WQRSLDEIT_					0	0	0			REV__ENST00000343544.8_1_2:88485199-88485639:+|nuORF	REV__ENST00000343544.8_1_2:88485199-88485639:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.29052734375	2	574.290745	1146.56694	-0.51233	-0.00029422	-0.27868	-0.00016004	-0.79101	-0.00045427	574.2907400473684	41.9	1.6847	41.9	41.52	43.205	0					73	59	2	0	0	0	0.32614	1	8000	8000		3.2813	0.28607	1	51705	+		24190	9489	15968	16125	32745	32745					-0.00048363879000135057
WQTRCFLR	8	Unmodified	_WQTRCFLR_					0	0	0			REV__nc|ENSG00000140285|P21781-2|FGF7	REV__nc|ENSG00000140285|P21781-2|FGF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2883911132812	2	555.287285	1108.56002	0.4592	0.00025499	1.5853	0.00088032	2.0445	0.0011353	555.2881834379858	15.818	0.20694	15.89	15.783	15.99	0.072399					40	26	2	0	0	0	0.53894	1	551	551		2.0598	0.21551	1	19001	+		24191	9363	15969	16126	32746	32746					0.010080447594191355
WQTRCFLR	8	Unmodified	_WQTRCFLR_					0	0	0			REV__nc|ENSG00000140285|P21781-2|FGF7	REV__nc|ENSG00000140285|P21781-2|FGF7	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	555.287285	1108.56002	0.4592	0.00025499	1.5853	0.00088032	2.0445	0.0011353	555.2881834379858	15.818	0.20694	15.89	15.783	15.99	0.072399	0.046486	-0.00027058	NaN	2.0598	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19001	+		24192	9363	15969	16126							0.010080447594191355
WRAKKGKP	8	Unmodified	_WRAKKGKP_					0	0	0			REV__ENST00000369162.6_1_6:101328966-101329125:-|nuORF	REV__ENST00000369162.6_1_6:101328966-101329125:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7999572753906	2	485.800886	969.587219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.516	1	36.598	36.098	37.098	0.081715								0	0	0	0.38822	1	6120	6120		0.69038	0.088878	1		+		24193	11580	15970	16127	32747	32747					0.10120896362127496
WRCCTAPTF	9	Unmodified	_WRCCTAPTF_					0	0	0		ENST00000465806.6_1_X:48935109-48935457:-|nuORF	ENST00000465806.6_1_X:48935109-48935457:-|nuORF	ENST00000465806.6_1_X:48935109-48935457:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.6480712890625	2	542.73878	1083.46301	0.32775	0.00017788	-0.59008	-0.00032026	-0.26234	-0.00014238	542.7383470810908	58.082	0.92487	58.152	57.853	58.778	0.070477					65	33	3	0	0	0	0.3182	1	12570	12570		4.3292	1.44	1	631650			24194	6635	15971	16128	32748	32748					-0.07538685511894982
WRDNLSPCKSP	11	Unmodified	_WRDNLSPCKSP_					0	0	0			REV__BRCA1|p.D1505N|1|0.21|ENSG00000012048|chr17:43074493-43074493|C/T|missense_variant	REV__BRCA1|p.D1505N|1|0.21|ENSG00000012048|chr17:43074493-43074493|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.882568359375	3	434.880162	1301.61866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.168	1	96.168	95.668	96.668	0								0	0	0	0.33897	1	24381	24381		1.1098	0.33322	1		+		24195	7740	15972	16129	32749	32749					-0.02008943456758061
WRDRHQLIF	9	Unmodified	_WRDRHQLIF_					0	0	0			REV__ENST00000496384.6_2_7:140420633-140420807:-|nuORF	REV__ENST00000496384.6_2_7:140420633-140420807:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	635.845947265625	2	635.843813	1269.67307	0.53318	0.00033902	1.6157	0.0010273	2.1489	0.0013664	635.8449522856619	82.078	0.58987	82.078	81.836	82.426	0					38	20	3	0	0	0	0.19398	1	20145	20145		19.257	19.257	1	169300	+		24196	12186	15973	16130	32750	32750					0.04902436476982075
WRDRHQLIF	9	Unmodified	_WRDRHQLIF_					0	0	0			REV__ENST00000496384.6_2_7:140420633-140420807:-|nuORF	REV__ENST00000496384.6_2_7:140420633-140420807:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	635.843813	1269.67307	0.2951	0.00018764	1.9478	0.0012385	2.2429	0.0014261	636.3466494636198	82.068	0.59933	82.09	81.905	82.504	0.021866	0.0057898	0.00022224	NaN	19.257	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122550	+		24197	12186	15973	16130							0.04902436476982075
WREAQARRRG	10	Unmodified	_WREAQARRRG_					0	0	0		ENST00000393381.2_1_4:170674981-170679050:-|nuORF	ENST00000393381.2_1_4:170674981-170679050:-|nuORF	ENST00000393381.2_1_4:170674981-170679050:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.352783203125	2	643.352868	1284.69118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.779	1	24.779	24.279	25.279	0								0	0	0	0.34018	1	2783	2783		0	0	1				24198	6319	15974	16131	32751	32751					0.060225714516718654
WREIKTQWL	9	Unmodified	_WREIKTQWL_					0	0	0		ENST00000499900.2_1_5:177045699-177046068:+|nuORF	ENST00000499900.2_1_5:177045699-177046068:+|nuORF	ENST00000499900.2_1_5:177045699-177046068:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	420.21630859375	3	420.568024	1258.68224	0.35372	0.00014876	-0.30187	-0.00012695	0.051853	2.1808E-05	420.9023262455	50.931	0.55745	50.931	50.651	51.208	0					38	18	3	0	0	0	0.25875	1	10671	10671		0.96228	0.18574	1	105760			24199	6857	15975	16132	32752	32752					0.06324785042647818
WRELRGCPGG	10	Unmodified	_WRELRGCPGG_					0	0	0		nc|ENSG00000293075|Q5TZK3|FAM74A4;nc|ENSG00000215112|Q5RGS3|FAM74A1;nc|ENSG00000277260|A6NL05|FAM74A7;nc|ENSG00000274355|Q4VXF1|FAM74A3	nc|ENSG00000293075|Q5TZK3|FAM74A4	nc|ENSG00000293075|Q5TZK3|FAM74A4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.3052978515625	2	565.779825	1129.5451	0.45876	0.00025956	0.57429	0.00032492	1.033	0.00058448	565.7800829915574	71.116	0.35213	71.175	71.026	71.378	0.058578					20	12	2	0	0	0	0.28526	1	16553	16553		27.629	1.3607	1	111190			24200	7605	15976	16133	32753	32753					-0.014494471085754412
WREPVPFII	9	Unmodified	_WREPVPFII_					0	0	0			REV__ENST00000396634.5_1_6:29913412-29913463:+|nuORF	REV__ENST00000396634.5_1_6:29913412-29913463:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.8291015625	2	578.829309	1155.64407	0.54095	0.00031312	-0.44423	-0.00025713	0.096725	5.5987E-05	578.8289284810921	91.979	0.89471	91.979	91.319	92.213	0					71	33	3	0	0	0	0.14091	1	23073	23073		25.399	0	1	610660	+		24201	11726	15977	16134	32754	32754					0.07246899127994766
WREQRTCTF	9	Unmodified	_WREQRTCTF_					0	0	0			REV__ENST00000380775.3_7:74298902-74299554:-|nuORF	REV__ENST00000380775.3_7:74298902-74299554:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.52978515625	3	409.529352	1225.56623	0.40242	0.0001648	0.97149	0.00039785	1.3739	0.00056265	409.5296409400285	80.153	0.74612	80.176	79.962	80.708	0.023605					59	26	3	0	0	0	0.29576	1	19362	19362		4.5289	1.2092	1	624580	+		24202	11669	15978	16135	32755	32755					-0.03753481799708425
WRERRRQKRRL	11	Unmodified	_WRERRRQKRRL_					0	0	0			REV__nc|ENSG00000164197|Q86T96-2|RNF180	REV__nc|ENSG00000164197|Q86T96-2|RNF180	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3312377929688	3	547.332857	1638.97674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.93	1	115.93	115.43	116.43	0								0	0	0	0.34212	1	29540	29540		0	0	1		+		24203	9986	15979	16136	32756	32756					0.18281211304952194
WRFHVWLDK	9	Unmodified	_WRFHVWLDK_					0	0	0		ENST00000291592.5_1_21:45875446-45876486:+|nuORF	ENST00000291592.5_1_21:45875446-45876486:+|nuORF	ENST00000291592.5_1_21:45875446-45876486:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.8432006835938	2	643.843282	1285.67201	0.59284	0.00038169	-1.4357	-0.0009244	-0.84291	-0.0005427	643.8421227965941	82.127	0.72743	82.127	81.836	82.563	0					47	25	3	0	0	0	0.33704	1	20205	20205		1.8442	0.36234	1	178640			24204	5949	15980	16137	32757	32757					0.04060222108068956
WRKHDRDM	8	Unmodified	_WRKHDRDM_					0	0	0			REV__nc|ENSG00000160633|Q15424-2|SAFB	REV__nc|ENSG00000160633|Q15424-2|SAFB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.276611328125	2	572.277449	1142.54035	-0.091894	-5.2589E-05	-0.70818	-0.00040528	-0.80008	-0.00045787	572.2770818525746	26.088	0.34871	26.18	25.971	26.32	0.091507					45	30	2	0	0	0	0.54097	1	3019	3019		0.69038	0.16561	1	17586	+		24205	9853	15981	16138	32758	32758					-0.02522331251338983
WRLFPCLFQ	9	Unmodified	_WRLFPCLFQ_					0	0	0		MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense;MLT1D_dup12653|chr10:46414983-46415321:+|2.2106022030730497|0.1456467840680696|3.92|516.0|18|2|anti-sense	MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense	MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.337646484375	2	605.315512	1208.61647	0.25948	0.00015707	1.8397	0.0011136	2.0992	0.0012707	605.8179863282589	72.59	0.47235	72.59	72.381	72.853	0					32	16	3	0	0	0	0.3182	1	17167	17167		4.3292	0	1	220650			24206	7432	15982	16139	32759	32759					0.020506725960785843
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2835998535156	3	481.283503	1440.82868	0.14161	6.8152E-05	0.25122	0.00012091	0.39282	0.00018906	481.2836271951267	94.334	0.52757	94.334	94.084	94.612	0					66	24	3	0	0	0	0.47446	1	23833	23833		0.15932	0.064481	1	188290			24207	2561	15983	16140	32760	32760					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.6181945800781	3	481.283503	1440.82868	0.023618	1.1367E-05	0.17381	8.3651E-05	0.19742	9.5017E-05	481.6178499354728	95.302	1.3817	95.302	94.566	95.948	0					145	60	4	0	0	0	0.47446	2	23929	23929;23975		0.15932	0.064481	1	329050			24208	2561	15983	16140	32761;32762	32761					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.2832336425781	3	481.283503	1440.82868	0.18008	8.6667E-05	0.089825	4.3231E-05	0.2699	0.0001299	481.2834637670582	96.865	2.1896	96.865	95.948	98.137	0					220	108	4	0	0	0	0.47446	3	24414	24414;24457;24897		0.15932	0.15932	1	954950			24209	2561	15983	16140	32763;32764;32765	32763					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2834777832031	3	481.283503	1440.82868	0.075305	3.6243E-05	0.33564	0.00016154	0.41094	0.00019778	481.28363314233627	94.253	0.53232	94.291	94.079	94.611	0.038086					48	21	3	0	0	0	0.47446	1	23613	23613		0.15932	0.064481	1	225260			24210	2561	15983	16140	32766	32766					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.28338623046875	3	481.283503	1440.82868	-0.02848	-1.3707E-05	0.21869	0.00010525	0.19021	9.1543E-05	481.28364147870826	95.169	1.6348	95.208	94.501	96.135	0.038872					151	73	4	0	0	0	0.47446	2	23755	23755;24076		0.15932	0.064481	1	273060			24211	2561	15983	16140	32767;32768	32767					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.2835388183594	3	481.283503	1440.82868	0.21359	0.0001028	0.058648	2.8226E-05	0.27224	0.00013102	481.2834553790044	96.832	2.3611	96.872	96.005	98.366	0.039772					283	122	4	0	0	0	0.47446	3	24652	24652;24745;24795		0.15932	0.15932	1	823200			24212	2561	15983	16140	32769;32770;32771	32769					0.12589900051079894
WRQAAPFAL	9	Unmodified	_WRQAAPFAL_					0	0	0		ENSG00000176087|ENST00000323146|SLC35A4	ENSG00000176087|ENST00000323146|SLC35A4	ENSG00000176087|ENST00000323146|SLC35A4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7894287109375	2	530.290351	1058.56615	0.49722	0.00026367	-1.6646	-0.00088272	-1.1674	-0.00061905	530.7902886514678	93.74	0.36308	93.777	93.534	93.897	0.037369					27	13	3	0	0	0	0.29105	1	23515	23515		7.9102	1.187	1	97139			24213	4648	15984	16141	32772	32772					0.03920886262608292
WRQRSEPR	8	Unmodified	_WRQRSEPR_					0	0	0			REV__nc|ENSG00000186493|Q86SI9-2|IRX2-DT	REV__nc|ENSG00000186493|Q86SI9-2|IRX2-DT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7960205078125	2	557.796863	1113.57917	0.12242	6.8284E-05	-1.4752	-0.00082286	-1.3528	-0.00075458	557.7959977303746	30.69	0.49128	30.766	30.58	31.071	0.075403					47	27	3	0	0	0	0.54097	1	4359	4359		0.69038	0	1	41275	+		24214	12863	15985	16142	32773	32773					0.026927173747026245
WRRAWFRQW	9	Unmodified	_WRRAWFRQW_					0	0	0			REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF	REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.578857421875	3	464.579257	1390.71594	-0.0020465	-9.5075E-07	0.34217	0.00015897	0.34012	0.00015801	464.57868562952854	59.44	0.61059	59.512	59.301	59.911	0.072342					60	23	4	0	0	0	0.28919	1	13056	13056		8.1555	2.3721	1	173300	+		24215	11705	15986	16143	32774	32774					0.03621251325080266
WRRAWFRQW	9	Unmodified	_WRRAWFRQW_					0	0	0			REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF	REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	464.579257	1390.71594	0.26786	0.00012444	-0.8448	-0.00039248	-0.57694	-0.00026804	464.5783831494176	59.589	0.65651	59.589	59.36	60.017	0	0.038497	-0.00086921	NaN	8.1555	39	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241560	+		24216	11705	15986	16143							0.03621251325080266
WRRAWFRQW	9	Unmodified	_WRRAWFRQW_					0	0	0			REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF	REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	464.579257	1390.71594	-0.0020465	-9.5075E-07	0.34217	0.00015897	0.34012	0.00015801	464.57868562952854	59.44	0.61059	59.512	59.301	59.911	0.072342	-0.038497	0.00078512	NaN	8.1555	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173300	+		24217	11705	15986	16143							0.03621251325080266
WRRRRPGRR	9	Unmodified	_WRRRRPGRR_					0	0	0		ENSG00000110665|ENST00000381153|C11orf21	ENSG00000110665|ENST00000381153|C11orf21	ENSG00000110665|ENST00000381153|C11orf21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.391845703125	2	648.392662	1294.77077	0.2787	0.00018071	0.46005	0.0002983	0.73876	0.000479	648.3929883286829	102.68	0.50926	102.72	102.52	103.03	0.040916					72	39	2	0	0	0	0.34372	1	26175	26175		1.8442	0	1	121780			24218	1675	15987	16144	32775	32775					0.13517682916335616
WRRWGWLF	8	Unmodified	_WRRWGWLF_					0	0	0			REV__ENST00000308497.8_1_4:184826565-184826772:+|nuORF	REV__ENST00000308497.8_1_4:184826565-184826772:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.8195190429688	2	603.81961	1205.62467	0.32585	0.00019676	0.16841	0.00010169	0.49426	0.00029845	603.8195346334563	21.301	0.11464	21.403	21.337	21.452	0.10178					17	10	2	0	0	0	0.54199	1	1712	1712		0	0	1	14479	+		24219	11367	15988	16145	32776	32776					0.0300798762773411
WRSFQGNQ	8	Unmodified	_WRSFQGNQ_					0	0	0			REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7449951171875	2	511.743765	1021.47298	0.10364	5.3036E-05	2.8515	0.0014592	2.9551	0.0015123	511.74473822784955	34.822	0.30725	34.898	34.733	35.04	0.076244					15	11	2	0	0	0	0.53894	1	5624	5624		2.0598	0.21551	1	15138	+		24220	10758	15989	16146	32777	32777					-0.03690038190620726
WRSHSLEL	8	Unmodified	_WRSHSLEL_					0	0	0			REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2510375976562	2	514.269616	1026.52468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.382	1	62.455	61.955	62.955	0.072701								0	0	0	0.38822	1	13944	13944		13.508	1.8676	1		+		24221	12378	15990	16147	32778	32778					0.01247705503283214
WRSHSLEL	8	Unmodified	_WRSHSLEL_					0	0	0			REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2509765625	2	514.269616	1026.52468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.555	1	62.628	62.128	63.128	0.072701								0	0	0	0.38822	1	13997	13997		13.508	0.97634	1		+		24222	12378	15990	16147	32779	32779					0.01247705503283214
WRSWRGILLFF	11	Unmodified	_WRSWRGILLFF_					0	0	0			REV__ENST00000428226.5_3_2:220092732-220094285:-|nuORF	REV__ENST00000428226.5_3_2:220092732-220094285:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.6131286621094	3	494.278585	1479.81392	0.36506	0.00018044	1.2807	0.00063303	1.6458	0.00081347	494.27920454127786	114.22	0.3067	114.24	114.14	114.45	0.013336					62	41	2	0	0	0	0.4185	1	29087	29087		0.094841	0.011491	1	30638	+		24223	11838	15991	16148	32780	32780					0.09321015130399246
WRYYEQLEWQL	11	Unmodified	_WRYYEQLEWQL_					0	0	0		tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7596435546875	3	538.596419	1612.76743	0.4123	0.00022207	-2.4515	-0.0013204	-2.0392	-0.0010983	538.5939504887182	60.607	0.50721	60.681	60.493	61	0.073421					25	17	2	0	0	0	0.31097	1	13478	13478		1.2148	0.76031	1	212740			24224	13609	15992	16149	32781	32781					-0.014445142821841728
WSCEQTQDLL	10	Unmodified	_WSCEQTQDLL_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|76|3|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|76|3|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|76|3|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	407.8901672363281	3	408.185139	1221.53359	0.19758	8.065E-05	0.48489	0.00019792	0.68247	0.00027857	408.1852436891373	57.421	0.43365	57.49	57.206	57.639	0.068371					26	16	2	0	0	0	0.3181	1	12452	12452		3.5871	0	1	55406			24225	7414	15993	16150	32782	32782					-0.06831733713192989
WSDWSPSL	8	Unmodified	_WSDWSPSL_					0	0	0		ENST00000487540.6_1_1:36933583-36937977:-|nuORF;ENST00000464365.2_1_1:36934562-36941005:-|nuORF;nc|ENSG00000119535|Q99062-2|CSF3R;nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;ENST00000480825.6_1_1:36937516-36938309:-|nuORF	ENST00000487540.6_1_1:36933583-36937977:-|nuORF	ENST00000487540.6_1_1:36933583-36937977:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.7216491699219	2	489.2218	976.429047	-0.042211	-2.0651E-05	0.63782	0.00031204	0.59561	0.00029138	489.22211264475743	34.194	0.45439	34.271	34.088	34.542	0.076244					28	17	2	0	0	0	0.3576	1	5447	5447		5.2307	0	1	31666			24226	2073	15994	16151	32783	32783					-0.0601106740762134
WSEHYLVTL	9	Unmodified	_WSEHYLVTL_					0	0	0			REV__ENSG00000061794|ENST00000081029|MRPS35	REV__ENSG00000061794|ENST00000081029|MRPS35	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2900390625	2	574.292756	1146.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.238	1	41.238	40.738	41.738	0								0	0	0	0.23884	1	7665	7665		11.64	0	1		+		24227	8082	15995	16152	32784	32784					0.003537256147183143
WSELSGLALL	10	Unmodified	_WSELSGLALL_					0	0	0			REV__ENSG00000124116|ENST00000243938|WFDC3	REV__ENSG00000124116|ENST00000243938|WFDC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.80322265625	2	544.802957	1087.59136	0.82648	0.00045027	0.90143	0.0004911	1.7279	0.00094137	544.8034567635049	81.282	0.75978	81.282	80.674	81.434	0					32	25	2	0	0	0	0.34138	1	19859	19859		18.146	1.0598	1	111800	+		24228	8943	15996	16153	32785	32785					0.05106896274514838
WSETYVDFT	9	Unmodified	_WSETYVDFT_					0	0	0			REV__nc|ENSG00000170835|P19835-2|CEL	REV__nc|ENSG00000170835|P19835-2|CEL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3167724609375	2	574.250754	1146.48696	0.1738	9.9804E-05	0.25937	0.00014894	0.43317	0.00024875	574.7534769598745	52.563	0.66132	52.563	52.424	53.085	0					34	23	2	0	0	0	0.2446	1	11249	11249		11.64	0.81637	1	122480	+		24229	10227	15997	16154	32786	32786					-0.08042850272886426
WSFYFGALSF	10	Unmodified	_WSFYFGALSF_					0	0	0		ENSG00000166862|ENST00000300105|CACNG2;ENSG00000075461|ENST00000262138|CACNG4	ENSG00000166862|ENST00000300105|CACNG2	ENSG00000166862|ENST00000300105|CACNG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.8630065917969	3	408.862325	1223.56515	0.39262	0.00016053	0.32823	0.0001342	0.72085	0.00029473	408.8623661054081	56.829	0.22257	56.829	56.725	56.948	0					13	7	2	0	0	0	0.44021	1	12415	12415		6.6304	0.89852	1	40945			24230	823	15998	16155	32787	32787					-0.03769372896954337
WSFYFGALSF	10	Unmodified	_WSFYFGALSF_					0	0	0		ENSG00000166862|ENST00000300105|CACNG2;ENSG00000075461|ENST00000262138|CACNG4	ENSG00000166862|ENST00000300105|CACNG2	ENSG00000166862|ENST00000300105|CACNG2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	408.862325	1223.56515	0.13141	5.3729E-05	0.63413	0.00025927	0.76554	0.000313	408.86253881593245	56.772	0.28643	56.838	56.683	56.97	0.066452	0.0043144	8.0468E-05	NaN	6.6304	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43289			24231	823	15998	16155							-0.03769372896954337
WSHDIFYIF	9	Unmodified	_WSHDIFYIF_					0	0	0			REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense	REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.792236328125	2	614.295299	1226.57605	-0.0070368	-4.3227E-06	1.5901	0.00097679	1.5831	0.00097246	614.2970512860984	76.451	1.1071	76.451	76.173	77.28	0					92	41	3	0	0	0	0.092418	3	18479	18479;18487;18531		34.102	1.6032	1	2643300	+		24232	13013	15999	16156	32788;32789;32790	32788					-0.02817970522687574
WSHDIFYIF	9	Unmodified	_WSHDIFYIF_					0	0	0			REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense	REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7931518554688	2	614.295299	1226.57605	0.068854	4.2297E-05	0.64267	0.00039479	0.71152	0.00043709	614.29693379099	76.386	1.1809	76.426	75.975	77.156	0.03923					140	51	5	0	0	0	0.1182	2	18169	18169;18349		28.487	1.6032	1	2558800	+		24233	13013	15999	16156	32791;32792	32791					-0.02817970522687574
WSHGFLGLF	9	Unmodified	_WSHGFLGLF_					0	0	0			REV__ENST00000296785.7_1_5:72858805-72861416:-|nuORF	REV__ENST00000296785.7_1_5:72858805-72861416:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7727661132812	2	532.271627	1062.5287	0.50318	0.00026783	-0.21896	-0.00011655	0.28422	0.00015128	532.2714064829745	76.234	0.97383	76.273	76.149	77.123	0.03923					47	36	3	0	0	0	0.17247	1	18251	18251		21.747	0.87544	1	224950	+		24234	11326	16000	16157	32793	32793					-6.205003023751487E-05
WSHPHPVQGG	10	Unmodified	_WSHPHPVQGG_					0	0	0		ENST00000479701.5_1_22:50716314-50717312:-|nuORF	ENST00000479701.5_1_22:50716314-50717312:-|nuORF	ENST00000479701.5_1_22:50716314-50717312:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2649536132812	2	551.264865	1100.51518	0.40009	0.00022056	1.8855	0.0010394	2.2856	0.00126	551.2649899584083	56.159	0.73497	56.159	55.915	56.65	0					59	26	3	0	0	0	0.30541	1	12222	12222		19.257	9.8739	1	918660			24235	6737	16001	16158	32794	32794					-0.031060627822625975
WSIFAYTWL	9	Unmodified	_WSIFAYTWL_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7979125976562	2	593.800217	1185.58588	0.53893	0.00032002	-2.5719	-0.0015272	-2.0329	-0.0012072	593.797717226175	64.64	1.0896	64.64	64.382	65.472	0					105	39	4	0	0	0	0.26684	1	14781	14781		10.824	0.75	1	385490			24236	4900	16002	16159	32795	32795					0.0005121748270084936
WSIKELIYK	9	Unmodified	_WSIKELIYK_					0	0	0			REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.342529296875	2	590.342249	1178.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.224	1	84.224	83.724	84.724	0								0	0	0	0.2428	1	20749	20749		10.824	2.9138	1		+		24237	13085	16003	16160	32796	32796					0.08775748579614628
WSISKHTQL	9	Unmodified	_WSISKHTQL_					0	0	0		nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7610473632812	2	550.298373	1098.58219	0.45633	0.00025112	2.6903	0.0014805	3.1467	0.0017316	550.2991767509135	74.557	1.0591	74.557	74.03	75.09	0					61	39	3	0	0	0	0.22912	1	17655	17655		8.7454	0	1	304360			24238	927	16004	16161	32797	32797					0.03684547708849095
WSKLFIVSS	9	Unmodified	_WSKLFIVSS_					0	0	0			REV__nc|ENSG00000135749|A6NKB5-2|PCNX2	REV__nc|ENSG00000135749|A6NKB5-2|PCNX2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7879028320312	2	533.800217	1065.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.941	1	53.007	52.507	53.507	0.06543								0	0	0	0.22204	1	11072	11072		14.838	6.245	1		+		24239	11402	16005	16162	32798	32798					0.055712174827021954
WSLECLQDW	9	Unmodified	_WSLECLQDW_					0	0	0		nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF;ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1	nc|ENSG00000142494|Q96FL8-2|SLC47A1	nc|ENSG00000142494|Q96FL8-2|SLC47A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3458862304688	2	590.260599	1178.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.102	1	84.124	83.624	84.624	0.021744								0	0	0	0.2428	1	20551	20551		10.824	1.4765	1				24240	3105	16006	16163	32799	32799					-0.0754679753374603
WSLHLSASL	9	Unmodified	_WSLHLSASL_					0	0	0			REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.274658203125	2	507.274367	1012.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.188	1	49.188	48.688	49.688	0								0	0	0	0.071558	1	10066	10066		42.095	0	1		+		24241	11522	16007	16164	32800	32800					0.028414737887942465
WSNLISKLNF	10	Unmodified	_WSNLISKLNF_					0	0	0			REV__ENSG00000253309|ENST00000681248|SERPINE3	REV__ENSG00000253309|ENST00000681248|SERPINE3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.8930358886719	3	407.892396	1220.65536	0.6378	0.00026015	0.8775	0.00035793	1.5153	0.00061808	407.89278516840966	74.695	0.92575	74.695	74.4	75.326	0					82	34	4	0	0	0	0.46521	1	17909	17909		1.9064	0	1	800600	+		24242	11084	16008	16165	32801	32801					0.05385676431478714
WSTESFLL	8	Unmodified	_WSTESFLL_					0	0	0			REV__nc|ENSG00000122008|Q9UBT6-8|POLK	REV__nc|ENSG00000122008|Q9UBT6-8|POLK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7477722167969	2	491.74765	981.480748	0.29262	0.0001439	-0.016844	-8.283E-06	0.27578	0.00013561	491.7475502754991	78.2	0.49834	78.2	78.013	78.512	0					36	16	3	0	0	0	0.52502	1	18957	18957		9.3474	0	1	242630	+		24243	8908	16009	16166	32802	32802					-0.010733237137174001
WSWCMRAR	8	Unmodified	_WSWCMRAR_					0	0	0			REV__ENST00000170168.8_1_19:1828312-1828606:-|nuORF	REV__ENST00000170168.8_1_19:1828312-1828606:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.76611328125	2	548.252388	1094.49022	0.00067989	3.7275E-07	0.87494	0.00047969	0.87562	0.00048006	548.7527383441748	31.563	0.13799	31.637	31.595	31.733	0.073782					9	6	2	0	0	0	0.3576	1	4633	4633		2.5775	0.51773	1	9491.3	+		24244	11161	16010	16167	32803	32803					-0.053241571808257504
WTDLALQYLH	10	Unmodified	_WTDLALQYLH_					0	0	0		ENSG00000129055|ENST00000354910|ANAPC13	ENSG00000129055|ENST00000354910|ANAPC13	ENSG00000129055|ENST00000354910|ANAPC13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.310302734375	2	630.324588	1258.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.258	1	67.323	66.823	67.823	0.065071								0	0	0	0.33681	1	15421	15421		3.9444	0.94915	1				24245	2417	16011	16168	32804	32804					0.015650860518007903
WTEFDHFL	8	Unmodified	_WTEFDHFL_					0	0	0			REV__nc|ENSG00000121940|Q96S66-2|CLCC1	REV__nc|ENSG00000121940|Q96S66-2|CLCC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2899169921875	2	547.750724	1093.4869	0.23005	0.00012601	-2.9585	-0.0016205	-2.7285	-0.0014945	548.2507062889053	91.228	0.36035	91.263	91.076	91.436	0.035446					18	12	2	0	0	0	0.3528	1	22741	22741		18.135	1.1927	1	77563	+		24246	12781	16012	16169	32805	32805					-0.056108054822061604
WTEKKTTT	8	Unmodified	_WTEKKTTT_					0	0	0		ENST00000301455.6_1_19:8438821-8439109:+|nuORF	ENST00000301455.6_1_19:8438821-8439109:+|nuORF	ENST00000301455.6_1_19:8438821-8439109:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2589111328125	2	497.763832	993.513111	-0.50358	-0.00025067	-0.91034	-0.00045313	-1.4139	-0.0007038	497.76341164977515	41.684	0.47866	41.684	41.459	41.938	0					54	17	4	0	0	0	0.3576	1	7741	7741		0.69038	0	1	297130			24247	5976	16013	16170	32806	32806					0.01609463689283075
WTEREFMSS	9	Unmodified	_WTEREFMSS_					0	0	0			REV__DNAI2|p.R505W|1|0.14|ENSG00000171595|chr17:74312021-74312021|C/T|missense_variant	REV__DNAI2|p.R505W|1|0.14|ENSG00000171595|chr17:74312021-74312021|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7913208007812	2	586.755681	1171.49681	0.56288	0.00033027	-2.3154	-0.0013586	-1.7525	-0.0010283	586.7531090385547	56.106	0.48299	56.172	56.011	56.494	0.066448					41	18	3	0	0	0	0.24635	1	12068	12068		10.824	3.5347	1	468760	+		24248	7890	16014	16171	32807	32807					-0.08207985539115725
WTIHAKPGFV	10	Unmodified	_WTIHAKPGFV_					0	0	0		ENST00000534803.1_1_11:35474916-35547133:-|nuORF;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3212280273438	2	578.319109	1154.62366	0.36581	0.00021156	2.5233	0.0014593	2.8891	0.0016708	578.3207833615492	87.658	0.80272	87.688	87.582	88.385	0.030037					40	28	3	0	0	0	0.45627	1	21625	21625		3.5965	1.5367	1	125470			24249	3382	16015	16172	32808	32808					0.05253728468187546
WTINNFSF	8	Unmodified	_WTINNFSF_					0	0	0		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.7455444335938	2	514.745442	1027.47633	0.8525	0.00043882	-0.59395	-0.00030574	0.25854	0.00013308	514.7449698857685	84.661	0.50757	84.661	84.507	85.014	0					51	23	3	0	0	0	0.022857	2	20903	20861;20903		120.45	42.466	1	890240			24250	2144	16016	16173	32809;32810	32810					-0.036307881366155925
WTINNFSF	8	Unmodified	_WTINNFSF_					0	0	0		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7454833984375	2	514.745442	1027.47633	0.57355	0.00029523	-0.27885	-0.00014354	0.2947	0.0001517	514.7451713437171	84.676	0.44659	84.699	84.561	85.007	0.023125					53	24	3	0	0	0	0.016688	2	20694	20694;20738		108	40.653	1	841470			24251	2144	16016	16173	32811;32812	32811					-0.036307881366155925
WTLRLADPLF	10	Unmodified	_WTLRLADPLF_					0	0	0			REV__ENST00000369138.5_1_6:101846885-101846978:+|nuORF	REV__ENST00000369138.5_1_6:101846885-101846978:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	411.2326354980469	3	411.232641	1230.67609	-0.053927	-2.2177E-05	0.22935	9.4318E-05	0.17543	7.2141E-05	411.23268292010033	48.721	1.1777	48.798	48.182	49.359	0.076607					108	40	4	0	0	0	0.40917	1	9832	9832		10.899	0	1	1057800	+		24252	11578	16017	16174	32813	32813					0.06998266811115172
WTLTFESTCI	10	Unmodified	_WTLTFESTCI_					0	0	0			REV__ENST00000451107.3_1_12:95475298-95611245:-|nuORF	REV__ENST00000451107.3_1_12:95475298-95611245:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.7838134765625	2	600.783907	1199.55326	-0.28532	-0.00017141	0.23627	0.00014195	-0.049048	-2.9467E-05	600.7840212236185	17.867	0.96953	17.867	17.672	18.641	0					308	115	5	0	0	0	0.46746	2	1051	1051;1074		1.4819	0	1	476640	+		24253	10501	16018	16175	32814;32815	32814					-0.038533577024509214
WTSLVLLAMA	10	Unmodified	_WTSLVLLAMA_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.253662109375	2	552.809728	1103.6049	0.56559	0.00031266	0.2868	0.00015855	0.85239	0.00047121	552.8097629826655	87.721	0.30728	87.721	87.547	87.855	0					14	10	2	0	0	0	0.31585	1	21846	21846		10.824	0.75	1	83926			24254	1894	16019	16176	32816	32816					0.05724430782129275
WTSTSPWE	8	Unmodified	_WTSTSPWE_					0	0	0		ENST00000367033.3_1_1:208383731-208390522:-|nuORF	ENST00000367033.3_1_1:208383731-208390522:-|nuORF	ENST00000367033.3_1_1:208383731-208390522:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.21917724609375	2	497.219257	992.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.612	1	23.712	23.212	24.212	0.099739								0	0	0	0.38822	1	2336	2336		0.69038	0	1				24255	6171	16020	16177	32817	32817					-0.0725537127024154
WTVPSPVPSHP	11	Unmodified	_WTVPSPVPSHP_					0	0	0			REV__ENST00000437879.6_1_1:201182683-201184240:+|nuORF	REV__ENST00000437879.6_1_1:201182683-201184240:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.87799072265625	3	401.876746	1202.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.336	1	25.336	24.836	25.836	0								0	0	0	0.33873	1	2945	2945		0.40827	0	1		+		24256	11873	16021	16178	32818	32818					0.01520816880338316
WTYHPWWT	8	Unmodified	_WTYHPWWT_					0	0	0		nc|ENSG00000196547|P49641-1|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7670288085938	2	588.766709	1175.51886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.315	1	21.315	20.815	21.815	0								0	0	0	0.38822	1	1819	1819		0	0	1				24257	7583	16022	16179	32819	32819					-0.0618739300841753
WVALVRFIF	9	Unmodified	_WVALVRFIF_					0	0	0			REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF	REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.792724609375	2	575.84222	1149.66989	0.20149	0.00011602	1.3653	0.00078618	1.5667	0.0009022	575.8429461094265	89.36	0.70752	89.36	89.009	89.716	0					58	27	3	0	0	0	0.24749	1	22358	22358		9.3474	4.1168	1	284970	+		24258	8769	16023	16180	32820	32820					0.10103793370240055
WVALVRFIF	9	Unmodified	_WVALVRFIF_					0	0	0			REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF	REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8433227539062	2	575.84222	1149.66989	0.51788	0.00029822	-0.46864	-0.00026986	0.049244	2.8357E-05	575.8416443056561	84.489	1.7086	84.512	84.012	85.72	0.023132					156	88	3	0	0	0	0.31136	1	20565	20565		5.2307	2.9279	1	1635200	+		24259	8769	16023	16180	32821	32821					0.10103793370240055
WVDEMQVQL	9	Oxidation (M)	_WVDEM(Oxidation (M))QVQL_		WVDEM(1)QVQL		WVDEM(89)QVQL	0	0	1		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2742919921875	2	582.273706	1162.53286	0.65753	0.00038286	-1.0836	-0.00063097	-0.42611	-0.00024811	582.273605530974	63.868	0.95371	63.868	63.679	64.632	0					84	33	4	0	0	0	0.0045417	1	14531	14531		89.401	49.451	1	756060			24260	7529;3480	16024	16181	32822	32822		221			-0.04190528362278201
WVDEMQVQL	9	Oxidation (M)	_WVDEM(Oxidation (M))QVQL_		WVDEM(1)QVQL		WVDEM(62)QVQL	0	0	1		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2740478515625	2	582.273706	1162.53286	0.90836	0.00052891	-1.059	-0.00061663	-0.15065	-8.7719E-05	582.273362168888	66.413	1.186	66.413	65.909	67.095	0					113	44	4	0	0	0	0.015341	3	15366	15243;15366;15415		61.602	37.581	1	640420			24261	7529;3480	16024	16181	32823;32824;32825	32824		221			-0.04190528362278201
WVDEMQVQL	9	Oxidation (M)	_WVDEM(Oxidation (M))QVQL_		WVDEM(1)QVQL		WVDEM(69)QVQL	0	0	1		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2732543945312	2	582.273706	1162.53286	0.86784	0.00050532	-0.50928	-0.00029654	0.35856	0.00020878	582.2734552437248	66.45	1.1006	66.517	66.025	67.126	0.066872					97	41	3	0	0	0	0.0093779	4	15288	15092;15191;15238;15288		69.105	45.084	1	684370			24262	7529;3480	16024	16181	32826;32827;32828;32829	32829		221			-0.04190528362278201
WVDEMQVQL	9	Oxidation (M)	_WVDEM(Oxidation (M))QVQL_					0	0	1		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	582.273706	1162.53286	0.68236	0.00039732	-0.98992	-0.0005764	-0.30755	-0.00017908	582.273680781271	63.811	0.78642	63.882	63.643	64.43	0.071018	0.0070725	5.9194E-05	NaN	89.401	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685080			24263	7529;3480	16024	16181				221			-0.04190528362278201
WVDEVSRE	8	Unmodified	_WVDEVSRE_					0	0	0			REV__ENST00000595090.5_1_19:49496726-49496906:+|nuORF	REV__ENST00000595090.5_1_19:49496726-49496906:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.76171875	2	510.243264	1018.47197	0.31799	0.00016225	2.5847	0.0013188	2.9027	0.0014811	510.243219193176	38.405	0.35993	38.405	38.207	38.567	0					19	11	3	0	0	0	0.3576	1	6786	6786		7.9102	0	1	22444	+		24264	12606	16025	16182	32830	32830					-0.03652297350186018
WVEAEQLLQ	9	Unmodified	_WVEAEQLLQ_					0	0	0			REV__nc|ENSG00000150527|Q96PC5-6|MIA2;REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF	REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7792358398438	2	558.290214	1114.56587	0.2901	0.00016196	0.13674	7.6341E-05	0.42684	0.0002383	558.2902755566066	50.823	0.934	50.823	50.567	51.501	0					54	31	2	0	0	0	0.22344	1	10605	10605		15.847	4.2069	1	69599	+		24265	9628;11862	16026	16183	32831	32831					0.01317421752082737
WVEHVLEAPW	10	Unmodified	_WVEHVLEAPW_					0	0	0			REV__ENST00000515213.1_1_7:420976-421372:+|nuORF	REV__ENST00000515213.1_1_7:420976-421372:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.3167724609375	2	633.319306	1264.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.129	1	43.218	42.718	43.718	0.089764								0	0	0	0.33892	1	8110	8110		1.4819	0.28856	1		+		24266	12280	16027	16184	32832	32832					0.002331033973632657
WVESIFLI	8	Unmodified	_WVESIFLI_					0	0	0		ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7841796875	2	503.784036	1005.55352	0.19685	9.9169E-05	0.075061	3.7814E-05	0.27191	0.00013698	503.78403348076813	95.491	0.72859	95.53	95.308	96.036	0.038872					51	34	2	0	0	0	0.49441	1	24014	24014		13.508	0	1	449430			24267	900	16028	16185	32833	32833					0.0509643007970908
WVFGILTEN	9	Unmodified	_WVFGILTEN_					0	0	0		nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-6|CYP3A43	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7987670898438	2	539.782025	1077.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.319	1	55.319	54.819	55.819	0								0	0	0	0.26267	1	11935	11935		6.7232	0.51738	1				24268	7445	16029	16186	32834	32834					0.013823405859739069
WVFGKLDQR	9	Unmodified	_WVFGKLDQR_					0	0	0			REV__ENSG00000197818|ENST00000361573|SLC9A8	REV__ENSG00000197818|ENST00000361573|SLC9A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8139038085938	2	574.81419	1147.61383	-0.10714	-6.1584E-05	-0.2775	-0.00015951	-0.38464	-0.00022109	574.8140094735032	26.946	0.68373	27.032	26.73	27.414	0.0867					82	47	2	0	0	0	0.34646	1	3337	3337		0.6015	0	1	26989	+		24269	10872	16030	16187	32835	32835					0.04592540462795114
WVGHHVAACW	10	Unmodified	_WVGHHVAACW_					0	0	0			REV__ENST00000407121.1_1_6:100023791-100023977:+|nuORF	REV__ENST00000407121.1_1_6:100023791-100023977:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2725219726562	2	583.271635	1164.52872	-0.22404	-0.00013068	-0.077614	-4.527E-05	-0.30166	-0.00017595	583.2725776325634	13.962	0.37561	13.962	13.75	14.126	0					82	49	2	0	0	0	0.4753	1	309	309		0	0	1	18911	+		24270	11767	16031	16188	32836	32836					-0.04696528274666889
WVGVLVSA	8	Unmodified	_WVGVLVSA_					0	0	0			REV__ENSG00000156097|ENST00000527748|GPR61	REV__ENSG00000156097|ENST00000527748|GPR61	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.7460021972656	2	415.742171	829.469789	0.33011	0.00013724	-1.1283	-0.0004691	-0.79823	-0.00033186	415.7415790251697	99.606	0.065659	99.649	99.601	99.666	0.042839					5	3	2	0	0	0	0.3576	1	25260	25260		0	0	1	188040	+		24271	9744	16032	16189	32837	32837					0.04823318702653978
WVHRTSIF	8	Unmodified	_WVHRTSIF_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2816772460938	2	523.282526	1044.5505	0.16685	8.7309E-05	-0.069671	-3.6458E-05	0.097177	5.0851E-05	523.2820944523448	89.928	0.42693	89.928	89.674	90.101	0					33	16	3	0	0	0	0.35759	1	22438	22438		11.64	3.7301	1	237110	+		24272	10686	16033	16190	32838	32838					0.03000599745564614
WVLLTAISVFV	11	Unmodified	_WVLLTAISVFV_					0	0	0			REV__ENSG00000165240|ENST00000341514|ATP7A	REV__ENSG00000165240|ENST00000341514|ATP7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.3728637695312	2	624.373549	1246.73255	-0.14392	-8.986E-05	-1.2391	-0.00077366	-1.383	-0.00086352	624.3728870899764	104.59	0.24601	104.59	104.45	104.69	0					28	21	2	0	0	0	0.41309	1	26906	26906		1.3295	0	1	68083	+		24273	10031	16034	16191	32839	32839					0.11904894647796027
WVLSGELLL	9	Unmodified	_WVLSGELLL_					0	0	0			REV__KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	REV__KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	515.3023681640625	2	515.302593	1028.59063	0.49326	0.00025418	0.23439	0.00012078	0.72764	0.00037496	515.3026446448071	93.552	0.68242	93.589	93.288	93.971	0.037369					58	28	3	0	0	0	0.18364	1	23522	23522		20.454	1.1966	1	3211900	+		24274	8883	16035	16192	32840	32840					0.07748101625475101
WVLWLARLP	9	Unmodified	_WVLWLARLP_					0	0	0			REV__ISLR2|p.P21Rfs*33|1|0.29|ENSG00000167178|chr15:74132814-74132814|C/-|frameshift_variant	REV__ISLR2|p.P21Rfs*33|1|0.29|ENSG00000167178|chr15:74132814-74132814|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.3482055664062	2	577.347669	1152.68079	0.41738	0.00024098	1.7214	0.00099386	2.1388	0.0012348	577.3485826744435	104.04	0.15096	104.08	104.02	104.17	0.03791					22	14	2	0	0	0	0.3354	1	26579	26579		2.0598	0	1	138310	+		24275	10107	16036	16193	32841	32841					0.11055195744552293
WVLWLARLP	9	Unmodified	_WVLWLARLP_					0	0	0			REV__ISLR2|p.P21Rfs*33|1|0.29|ENSG00000167178|chr15:74132814-74132814|C/-|frameshift_variant	REV__ISLR2|p.P21Rfs*33|1|0.29|ENSG00000167178|chr15:74132814-74132814|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.348876953125	2	577.347669	1152.68079	0.4289	0.00024763	1.777	0.0010259	2.2059	0.0012736	577.3485085808449	103.73	0.13562	103.77	103.7	103.83	0.037903					21	11	3	0	0	0	0.25845	1	26507	26507		2.0598	0	1	152340	+		24276	10107	16036	16193	32842	32842					0.11055195744552293
WVLYVPEAAF	10	Unmodified	_WVLYVPEAAF_					0	0	0			REV__ENST00000425203.1_1_22:31644623-31654315:+|nuORF	REV__ENST00000425203.1_1_22:31644623-31654315:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8123779296875	2	597.813325	1193.6121	-0.62157	-0.00037158	-0.61135	-0.00036547	-1.2329	-0.00073705	597.813019115742	41.786	0.90561	41.786	41.459	42.365	0					53	32	2	0	0	0	0.46656	1	7930	7930		1.6526	0.45928	1	46509	+		24277	11828	16037	16194	32843	32843					0.02303486654182052
WVMVCLAMI	9	Unmodified	_WVMVCLAMI_					0	0	0		nc|ENSG00000072041|Q9H2J7-2|SLC6A15;nc|ENSG00000072041|Q9H2J7-3|SLC6A15;ENSG00000072041|ENST00000266682|SLC6A15	nc|ENSG00000072041|Q9H2J7-2|SLC6A15	nc|ENSG00000072041|Q9H2J7-2|SLC6A15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3086547851562	2	533.268327	1064.5221	0.41995	0.00022395	-3.4356	-0.0018321	-3.0157	-0.0016082	533.2662506058581	68.123	0.40964	68.123	67.914	68.324	0					23	14	2	0	0	0	0.237	1	15798	15798		14.582	4.3983	1	90902			24278	778	16038	16195	32844	32844					-0.007579255418932007
WVMVCLAMI	9	Unmodified	_WVMVCLAMI_					0	0	0		nc|ENSG00000072041|Q9H2J7-2|SLC6A15;nc|ENSG00000072041|Q9H2J7-3|SLC6A15;ENSG00000072041|ENST00000266682|SLC6A15	nc|ENSG00000072041|Q9H2J7-2|SLC6A15	nc|ENSG00000072041|Q9H2J7-2|SLC6A15	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	533.268327	1064.5221	0.67232	0.00035853	-3.9206	-0.0020907	-3.2483	-0.0017322	533.2661303330372	68.059	0.34026	68.123	67.992	68.333	0.063507	-6.1683E-07	-0.00018597	NaN	14.582	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100680			24279	778	16038	16195							-0.007579255418932007
WVPVEKNGEE	10	Unmodified	_WVPVEKNGEE_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.79248046875	2	593.790578	1185.5666	0.62407	0.00037057	1.343	0.00079747	1.9671	0.001168	593.7914494072699	85.276	0.7131	85.299	85.007	85.72	0.023125					60	28	3	0	0	0	0.35104	1	20964	20964		17.113	2.2746	1	960340			24280	3715	16039	16196	32845	32845					-0.01875783598848102
WVPWEELP	8	Unmodified	_WVPWEELP_					0	0	0		ENSG00000136159|ENST00000258662|NUDT15	ENSG00000136159|ENST00000258662|NUDT15	ENSG00000136159|ENST00000258662|NUDT15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.6936645507812	2	528.263468	1054.51238	0.23403	0.00012363	-0.89238	-0.00047141	-0.65834	-0.00034778	528.2629020754318	37.011	0.41252	37.011	36.806	37.219	0					28	16	2	0	0	0	0.3576	1	6453	6453		0.79363	0	1	39508			24281	2774	16040	16197	32846	32846					-0.012693309597580082
WVVLRVLALSI	11	Unmodified	_WVVLRVLALSI_					0	0	0			REV__ENST00000569795.5_1_15:72559856-72559907:-|nuORF	REV__ENST00000569795.5_1_15:72559856-72559907:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.9081420898438	2	634.908091	1267.80163	-0.16816	-0.00010677	0.42704	0.00027113	0.25888	0.00016437	635.4099827371764	108.55	0.19991	108.55	108.42	108.62	0					75	29	3	0	0	0	0.41309	1	27978	27978		1.3295	0	1	4563800	+		24282	12518	16041	16198	32847	32847					0.17843978667360716
WVVLRVLALSI	11	Unmodified	_WVVLRVLALSI_					0	0	0			REV__ENST00000569795.5_1_15:72559856-72559907:-|nuORF	REV__ENST00000569795.5_1_15:72559856-72559907:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.908935546875	2	634.908091	1267.80163	-0.16789	-0.0001066	0.80377	0.00051032	0.63588	0.00040373	634.9090797450262	108.77	0.28151	108.77	108.7	108.99	0					71	43	3	0	0	0	0.41309	1	28049	28049		1.3295	0	1	1547100	+		24283	12518	16041	16198	32848	32848					0.17843978667360716
WVWEHFSSM	9	Unmodified	_WVWEHFSSM_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3186645507812	2	604.763309	1207.51206	0.70935	0.00042899	1.8122	0.001096	2.5216	0.001525	604.7638213216195	55.54	0.32639	55.605	55.432	55.758	0.065128					18	11	2	0	0	0	0.2446	1	11844	11844		11.64	0.14559	1	138350			24284	4003	16042	16199	32849	32849					-0.08339073951265163
WVYKEQVK	8	Unmodified	_WVYKEQVK_					0	0	0			REV__ENST00000462978.1_1_1:155697409-155701908:+|nuORF	REV__ENST00000462978.1_1_1:155697409-155701908:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7694091796875	2	540.297842	1078.58113	0.41196	0.00022258	-1.0109	-0.0005462	-0.59897	-0.00032362	540.2971599457487	38.859	0.43531	38.945	38.717	39.153	0.08688					25	16	2	0	0	0	0.3576	1	6879	6879		0.79363	0	1	31427	+		24285	9125	16043	16200	32850	32850					0.04498333339938654
WVYKEQVK	8	Unmodified	_WVYKEQVK_					0	0	0			REV__ENST00000462978.1_1_1:155697409-155701908:+|nuORF	REV__ENST00000462978.1_1_1:155697409-155701908:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	540.297842	1078.58113	0.22285	0.0001204	-1.1936	-0.00064488	-0.97072	-0.00052448	540.2972183552577	38.968	0.39972	38.968	38.763	39.162	0	0.011081	-0.00010834	NaN	0.79363	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24489	+		24286	9125	16043	16200							0.04498333339938654
WWFCKKKV	8	Unmodified	_WWFCKKKV_					0	0	0			REV__ENSG00000204767|ENST00000377365|INSYN2B	REV__ENSG00000204767|ENST00000377365|INSYN2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8067016601562	2	562.807322	1123.60009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.195	1	15.195	14.695	15.695	0								0	0	0	0.38822	1	505	505		0	0	1		+		24287	10956	16044	16201	32851	32851					0.043235914299884826
WWFCKKKV	8	Unmodified	_WWFCKKKV_					0	0	0			REV__ENSG00000204767|ENST00000377365|INSYN2B	REV__ENSG00000204767|ENST00000377365|INSYN2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8068237304688	2	562.807322	1123.60009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.46	1	15.46	14.96	15.96	0								0	0	0	0.38822	1	549	549		0	0	1		+		24288	10956	16044	16201	32852	32852					0.043235914299884826
WWHATISKTF	10	Unmodified	_WWHATISKTF_					0	0	0		VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	426.5161437988281	3	426.220624	1275.64004	0.079454	3.3865E-05	-0.7566	-0.00032248	-0.67715	-0.00028861	426.22055126206686	33.004	0.12179	33.004	32.958	33.08	0					5	4	2	0	0	0	0.31851	1	5200	5200		0.77653	0	1	7461			24289	13762	16045	16202	32853	32853					0.01324809634252233
WWLCPRVPMS	10	Unmodified	_WWLCPRVPMS_					0	0	0		ENST00000493195.5_1_1:159900586-159902547:-|nuORF	ENST00000493195.5_1_1:159900586-159902547:-|nuORF	ENST00000493195.5_1_1:159900586-159902547:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.8119506835938	2	637.812279	1273.61	0.12253	7.8151E-05	-0.55447	-0.00035365	-0.43194	-0.0002755	637.8118373110067	89.642	0.92325	89.676	89.089	90.013	0.034058					78	34	3	0	0	0	0.46656	1	22251	22251		1.6526	0	1	175680			24290	6818	16046	16203	32854	32854					-0.015855886269264374
WWLGRCKTS	9	Unmodified	_WWLGRCKTS_					0	0	0			REV__ENSG00000113946|ENST00000264734|CLDN16	REV__ENSG00000113946|ENST00000264734|CLDN16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.7877807617188	2	568.787118	1135.55968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.535	1	28.535	28.035	29.035	0								0	0	0	0.29233	1	3867	3867		0.6015	0	1		+		24291	8755	16047	16204	32855	32855					-0.00267374960435518
WWLQWLGI	8	Unmodified	_WWLQWLGI_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2986450195312	2	551.297645	1100.58074	0.34893	0.00019236	1.2523	0.00069039	1.6012	0.00088275	551.2983180602864	17.061	0.24382	17.139	17.034	17.278	0.077806					48	30	2	0	0	0	0.54081	2	763	763;768		0.79363	0	1	31699			24292	5211	16048	16205	32856;32857	32856					0.034469584107455375
WWNEKPRC	8	Unmodified	_WWNEKPRC_					0	0	0			REV__ENSG00000164951|ENST00000297598|PDP1	REV__ENSG00000164951|ENST00000297598|PDP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7224731445312	2	559.763643	1117.51273	0.40255	0.00022533	-0.43767	-0.00024499	-0.035126	-1.9662E-05	559.7636466634606	46.961	0.9122	46.961	46.728	47.64	0					65	32	3	0	0	0	0.3576	1	9586	9586		2.3027	0.24298	1	113000	+		24293	10015	16049	16206	32858	32858					-0.04132234511575916
WWNEKPRC	8	Unmodified	_WWNEKPRC_					0	0	0			REV__ENSG00000164951|ENST00000297598|PDP1	REV__ENSG00000164951|ENST00000297598|PDP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	559.763643	1117.51273	0.42518	0.000238	-0.21795	-0.000122	0.20723	0.000116	559.7633960543379	46.768	0.58558	46.852	46.711	47.297	0.083096	-0.054728	0.00013932	NaN	2.3027	28	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48893	+		24294	10015	16049	16206							-0.04132234511575916
WWQIKINFILF	11	Unmodified	_WWQIKINFILF_					0	0	0		ENST00000546378.1_1_12:54370099-54370336:+|nuORF	ENST00000546378.1_1_12:54370099-54370336:+|nuORF	ENST00000546378.1_1_12:54370099-54370336:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.80218505859375	3	503.286857	1506.83874	0.53505	0.00026928	-1.3923	-0.00070075	-0.85729	-0.00043146	503.28608979438	97.625	0.14948	97.666	97.632	97.781	0.040855					10	8	2	0	0	0	0.31096	1	24682	24682		1.4551	0.12547	1	37388			24295	7077	16050	16207	32859	32859					0.10559650213099303
WWRQPDQKHF	10	Unmodified	_WWRQPDQKHF_					0	0	0		ENST00000475645.1_1_6:106634265-106634361:-|nuORF	ENST00000475645.1_1_6:106634265-106634361:-|nuORF	ENST00000475645.1_1_6:106634265-106634361:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2318420410156	3	476.570427	1426.68945	-0.35234	-0.00016791	-1.0346	-0.00049305	-1.3869	-0.00066096	476.5698784614586	31.302	0.45233	31.376	31.161	31.613	0.073782					32	22	2	0	0	0	0.31856	1	4592	4592		0.15932	0.01943	1	10906			24296	6709	16051	16208	32860	32860					-0.006824823569331784
WWRRRRGDG	9	Unmodified	_WWRRRRGDG_					0	0	0		ENST00000477886.5_1_7:102004543-102004654:+|nuORF	ENST00000477886.5_1_7:102004543-102004654:+|nuORF	ENST00000477886.5_1_7:102004543-102004654:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8291015625	2	622.829029	1243.64351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.642	1	14.642	14.142	15.142	0								0	0	0	0.29525	1	409	409		0	0	1				24297	6723	16052	16209	32861	32861					0.0314291725151179
WWSFLFSF	8	Unmodified	_WWSFLFSF_					0	0	0			REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3	REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7303466796875	2	560.268553	1118.52255	0.57559	0.00032248	-3.4796	-0.0019495	-2.904	-0.001627	560.2666986294704	93.736	0.65702	93.736	93.241	93.898	0					32	25	2	0	0	0	0.35759	1	23583	23583		13.508	2.3934	1	102600	+		24298	8251	16053	16210	32862	32862					-0.03196723234509591
WWVSPEPL	8	Unmodified	_WWVSPEPL_					0	0	0			REV__nc|ENSG00000112655|Q13308-5|PTK7	REV__nc|ENSG00000112655|Q13308-5|PTK7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.25628662109375	2	507.258185	1012.50182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.94	1	106.97	106.47	107.47	0.025711								0	0	0	0.38822	1	27390	27390		0.79363	0	1		+		24299	8719	16054	16211	32863	32863					-0.003933136141995419
WWWRWLRRRR	10	Unmodified	_WWWRWLRRRR_					0	0	0			REV__chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2509155273438	3	552.979755	1655.91744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.918	1	22.02	21.52	22.52	0.10178								0	0	0	0.34006	1	1882	1882		0.13989	0.13989	1		+		24300	7784	16055	16212	32864	32864					0.11571360081393323
WWYELRHI	8	Unmodified	_WWYELRHI_					0	0	0			REV__ENST00000554315.5_1_14:73753704-73876743:-|nuORF	REV__ENST00000554315.5_1_14:73753704-73876743:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	401.8778076171875	3	401.541697	1201.60326	0.047035	1.8887E-05	2.064	0.00082879	2.1111	0.00084768	401.87756363196945	27.229	0.40451	27.229	27.04	27.445	0					36	24	2	0	0	0	0.54081	1	3546	3546		0.45834	0.18932	1	20803	+		24301	12453	16056	16213	32865	32865					0.010525578083615983
WYDEPVVF	8	Unmodified	_WYDEPVVF_					0	0	0			REV__nc|ENSG00000183878|O14607-5|UTY	REV__nc|ENSG00000183878|O14607-5|UTY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7465209960938	2	527.74765	1053.48075	0.80185	0.00042318	-2.2062	-0.0011643	-1.4043	-0.00074112	527.7464500142916	80.579	1.8961	80.579	80.169	82.066	0					86	65	2	0	0	0	0.51887	1	19739	19739		10.183	0.10947	1	103470	+		24302	10617	16057	16214	32866	32866					-0.04385323713722755
WYDSLYRVF	9	Unmodified	_WYDSLYRVF_					0	0	0			REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.8604736328125	3	416.873113	1247.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.676	1	31.676	31.176	32.176	0								0	0	0	0.26517	1	4794	4794		3.8763	1.2451	1		+		24303	10781	16058	16215	32867	32867					-0.01638585493969913
WYDSLYRVF	9	Unmodified	_WYDSLYRVF_					0	0	0			REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8606262207031	3	416.873113	1247.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.389	1	30.464	29.964	30.964	0.075403								0	0	0	0.26517	1	4290	4290		3.8763	1.3778	1		+		24304	10781	16058	16215	32868	32868					-0.01638585493969913
WYDSLYRVF	9	Unmodified	_WYDSLYRVF_					0	0	0			REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.86053466796875	3	416.873113	1247.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.65	1	31.724	31.224	32.224	0.073782								0	0	0	0.26517	1	4666	4666		3.8763	1.3778	1		+		24305	10781	16058	16215	32869	32869					-0.01638585493969913
WYFEHQLKH	9	Unmodified	_WYFEHQLKH_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.314697265625	2	644.317097	1286.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.11	1	106.14	105.64	106.64	0.029739								0	0	0	0.2927	1	27160	27160		0.52476	0.066424	1				24306	1923	16059	16216	32870	32870					-0.012203610255483
WYFWFLLM	8	Unmodified	_WYFWFLLM_					0	0	0		nc|ENSG00000154978|Q96AW1-4|VOPP1;nc|ENSG00000154978|Q96AW1-2|VOPP1;nc|ENSG00000154978|Q96AW1-3|VOPP1;ENSG00000154978|ENST00000285279|VOPP1	nc|ENSG00000154978|Q96AW1-4|VOPP1	nc|ENSG00000154978|Q96AW1-4|VOPP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.79833984375	2	603.296256	1204.57796	0.61063	0.00036839	-0.22878	-0.00013802	0.38185	0.00023037	603.296098191658	87.83	0.51153	87.83	87.402	87.914	0					26	16	2	0	0	0	0.51202	1	21829	21829		11.114	0.29054	1	111820			24307	3574	16060	16217	32871	32871					-0.01614633038411739
WYFWFLLM	8	Unmodified	_WYFWFLLM_					0	0	0		nc|ENSG00000154978|Q96AW1-4|VOPP1;nc|ENSG00000154978|Q96AW1-2|VOPP1;nc|ENSG00000154978|Q96AW1-3|VOPP1;ENSG00000154978|ENST00000285279|VOPP1	nc|ENSG00000154978|Q96AW1-4|VOPP1	nc|ENSG00000154978|Q96AW1-4|VOPP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	603.296256	1204.57796	0.48267	0.00029119	0.23208	0.00014001	0.71475	0.00043121	603.2961355011294	87.643	0.42268	87.673	87.458	87.881	0.030037	-0.078714	0.00026821	NaN	11.114	22	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65571			24308	3574	16060	16217							-0.01614633038411739
WYGKHVPVF	9	Unmodified	_WYGKHVPVF_					0	0	0			REV__tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1	REV__tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7990112304688	2	566.800552	1131.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.105	1	99.105	98.605	99.605	0								0	0	0	0.2722	1	25273	25273		4.756	0	1		+		24309	13205	16061	16218	32872	32872					0.026020569224101564
WYGQCFLSL	9	Unmodified	_WYGQCFLSL_					0	0	0			REV__ENST00000007708.7_1_17:48187616-48187931:+|nuORF	REV__ENST00000007708.7_1_17:48187616-48187931:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7630004882812	2	558.762778	1115.511	0.72652	0.00040595	-0.22506	-0.00012576	0.50146	0.0002802	558.7625441788833	65.838	1.5756	65.905	65.663	67.238	0.066864					132	59	4	0	0	0	0.10067	1	15055	15055		32.305	7.3145	1	6729600	+		24310	11159	16062	16219	32873	32873					-0.0421328832017025
WYGWHFPEL	9	Unmodified	_WYGWHFPEL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7880859375	2	617.787641	1233.56073	0.31089	0.00019207	0.16833	0.00010399	0.47922	0.00029606	617.7877661837227	81.335	1.2762	81.335	81.087	82.364	0					124	44	5	0	0	0	0.0043406	1	19889	19889		97.075	75.328	1	1328300			24311	608	16063	16220	32874	32874					-0.046708373198725894
WYGWHFPEL	9	Unmodified	_WYGWHFPEL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.7877807617188	2	617.787641	1233.56073	0.089781	5.5465E-05	0.26736	0.00016517	0.35714	0.00022064	617.7878315698232	81.321	0.82643	81.342	81.079	81.905	0.021866					100	29	6	0	0	0	0.0037915	1	19732	19732		104.8	72.013	1	1319700			24312	608	16063	16220	32875	32875					-0.046708373198725894
WYGYHFPEL	9	Unmodified	_WYGYHFPEL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2799682617188	2	606.279649	1210.54475	0.32465	0.00019683	0.81912	0.00049661	1.1438	0.00069344	606.2797044507072	72.071	1.2722	72.071	71.701	72.973	0					74	44	3	0	0	0	0.0099477	1	17056	17056		67.344	46.929	1	508180			24313	1254	16064	16221	32876	32876					-0.052105435567682434
WYGYHFPEL	9	Unmodified	_WYGYHFPEL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2800903320312	2	606.279649	1210.54475	0.55137	0.00033428	1.0382	0.00062943	1.5896	0.00096372	606.2795212433135	72.041	0.7536	72.097	71.76	72.514	0.055931					70	26	4	0	0	0	0.0099477	1	16890	16890		67.344	48.087	1	415560			24314	1254	16064	16221	32877	32877					-0.052105435567682434
WYHLHGPQI	9	Unmodified	_WYHLHGPQI_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4;ENST00000485732.5_1_9:139751390-139753468:+|nuORF	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7608032226562	2	575.793258	1149.57196	0.24193	0.0001393	-1.42	-0.00081763	-1.1781	-0.00067832	575.792156803601	90.298	0.46382	90.298	90.138	90.602	0					23	18	2	0	0	0	0.25051	1	22666	22666		7.9102	1.187	1	103430			24315	4725	16065	16222	32878	32878					0.00315984774260869
WYHWHPGHI	9	Unmodified	_WYHWHPGHI_					0	0	0		ENSG00000170074|ENST00000614127|FAM153A	ENSG00000170074|ENST00000614127|FAM153A	ENSG00000170074|ENST00000614127|FAM153A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.7902221679688	2	616.79105	1231.56755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.263	1	37.263	36.763	37.763	0								0	0	0	0.28409	1	6468	6468		2.3027	0.82083	1				24316	4374	16066	16223	32879	32879					-0.03897479648640001
WYKDHHYG	8	Unmodified	_WYKDHHYG_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.1953125	2	553.246141	1104.47773	0.16685	9.2307E-05	-1.3697	-0.00075781	-1.2029	-0.0006655	553.2452152378747	40.032	0.29591	40.12	40.018	40.314	0.088566					13	11	2	0	0	0	0.54097	1	7228	7228		0.69038	0.088878	1	23784			24317	4550	16067	16224	32880	32880					-0.07033154047871903
WYPLHFTF	8	Unmodified	_WYPLHFTF_					0	0	0			REV__ENSG00000178358|ENST00000317834|OR2D3	REV__ENSG00000178358|ENST00000317834|OR2D3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2791137695312	2	555.774003	1109.53345	0.74644	0.00041485	2.3841	0.001325	3.1305	0.0017399	556.2776062593105	100	1.097	100.04	99.769	100.87	0.042839					154	63	4	0	0	0	0.52502	1	25329	25329		9.3474	2.0582	1	734610	+		24318	10449	16068	16225	32881	32881					-0.016933208602495142
WYQKLLAAL	9	Unmodified	_WYQKLLAAL_					0	0	0		PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant;nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7693481445312	2	553.32386	1104.63317	0.0069077	3.8222E-06	-3.3406	-0.0018484	-3.3337	-0.0018446	553.3217754968471	43.786	0.19115	43.786	43.638	43.829	0					10	6	2	0	0	0	0.25845	1	8397	8397		2.0598	1.6014	1	23656			24319	2949	16069	16226	32882	32882					0.08503496753701256
WYTHHLFVIFF	11	Unmodified	_WYTHHLFVIFF_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7841796875	3	503.92744	1508.76049	0.51114	0.00025758	0.38599	0.00019451	0.89714	0.00045209	503.9274966132889	98.033	0.21677	98.075	98.034	98.25	0.041939					13	10	2	0	0	0	0.311	1	24802	24802		0.50596	0	1	40375			24320	4063	16070	16227	32883	32883					0.026462176278755578
WYYAQLQN	8	Unmodified	_WYYAQLQN_					0	0	0		APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant;APC|p.T1556Nfs*3|1|0.74|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant	APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.255615234375	2	543.256174	1084.49779	-0.32676	-0.00017751	-0.55569	-0.00030188	-0.88245	-0.0004794	543.2558855033361	18.332	0.85762	18.332	18.233	19.091	0					143	99	3	0	0	0	0.54097	1	1105	1105		0.69038	0.088878	1	55214			24321	41	16071	16228	32884	32884					-0.04107403107900609
WYYDKSGFF	9	Unmodified	_WYYDKSGFF_					0	0	0			REV__nc|ENSG00000109685|O96028-4|NSD2	REV__nc|ENSG00000109685|O96028-4|NSD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3372192382812	2	606.771657	1211.52876	0.55041	0.00033397	-1.3586	-0.00082436	-0.80818	-0.00049038	606.7707476844168	72.502	0.60448	72.557	72.265	72.869	0.055931					29	20	2	0	0	0	0.24791	1	16969	16969		10.074	3.3508	1	97121	+		24322	8647	16072	16229	32885	32885					-0.06854249793673262
YAAAEYERL	9	Unmodified	_YAAAEYERL_					0	0	0		nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3;ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-7|NPHP3;nc|ENSG00000113971|Q7Z494-4|NPHP3;nc|ENSG00000113971|Q7Z494-5|NPHP3	nc|ENSG00000113971|Q7Z494-3|NPHP3	nc|ENSG00000113971|Q7Z494-3|NPHP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7945556640625	2	543.266739	1084.51892	-0.15108	-8.2075E-05	2.0687	0.0011239	1.9177	0.0010418	543.2682178354751	43.162	0.26399	43.162	43.063	43.327	0					10	8	2	0	0	0	0.25458	1	8245	8245		5.7319	1.4026	1	20194			24323	1822	16073	16230	32886	32886					-0.019954377990416106
YAAAGSAYLL	10	Unmodified	_YAAAGSAYLL_					0	0	0			REV__ENSG00000090530|ENST00000319332|P3H2	REV__ENSG00000090530|ENST00000319332|P3H2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.26025390625	2	500.260925	998.507297	0.38217	0.00019118	-1.8173	-0.00090912	-1.4351	-0.00071793	500.25992037400647	71.479	0.48683	71.479	71.239	71.726	0					26	16	2	0	0	0	0.27354	2	16840	16840;16889		25.399	9.5521	1	320470	+		24324	8305	16074	16231	32887;32888	32887					0.007983651776157785
YAAAGSAYLL	10	Unmodified	_YAAAGSAYLL_					0	0	0			REV__ENSG00000090530|ENST00000319332|P3H2	REV__ENSG00000090530|ENST00000319332|P3H2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.259521484375	2	500.260925	998.507297	0.33574	0.00016796	-3.8127	-0.0019073	-3.477	-0.0017394	500.2598745190828	71.433	0.71558	71.492	71.237	71.953	0.058578					81	25	6	0	0	0	0.27354	1	16667	16667		25.399	9.5521	1	423270	+		24325	8305	16074	16231	32889	32889					0.007983651776157785
YAAALSQEL	9	Unmodified	_YAAALSQEL_					0	0	0			REV__nc|ENSG00000287363|X6R8D5|CIMIP3	REV__nc|ENSG00000287363|X6R8D5|CIMIP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2498779296875	2	483.250557	964.486562	-0.4496	-0.00021727	-0.83086	-0.00040151	-1.2805	-0.00061878	483.250137634036	44.601	0.47005	44.601	44.554	45.024	0					25	16	2	0	0	0	0.29105	1	8747	8747		7.9102	1.5561	1	50721	+		24326	12917	16075	16232	32890	32890					0.002897747979545784
YAAALSQEL	9	Unmodified	_YAAALSQEL_					0	0	0			REV__nc|ENSG00000287363|X6R8D5|CIMIP3	REV__nc|ENSG00000287363|X6R8D5|CIMIP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2498474121094	2	483.250557	964.486562	-0.26606	-0.00012857	0.28238	0.00013646	0.016324	7.8886E-06	483.25064791239623	43.838	1.0519	43.927	43.683	44.735	0.088924					95	36	4	0	0	0	0.3182	1	8554	8554		4.3292	0.73274	1	2086400	+		24327	12917	16075	16232	32891	32891					0.002897747979545784
YAAFKRWHF	9	Unmodified	_YAAFKRWHF_					0	0	0		nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;ENSG00000112031|ENST00000367233|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.3154907226562	2	613.3169	1224.61925	-0.72491	-0.0004446	-2.8922	-0.0017738	-3.6171	-0.0022184	613.3154418052407	41.347	0.8498	41.347	40.759	41.609	0					35	30	2	0	0	0	0.34704	1	7628	7628		0.52476	0	1	31871			24328	1739	16076	16233	32892	32892					0.015922640452572523
YAAHASCETL	10	Unmodified	_YAAHASCETL_					0	0	0			REV__ENSG00000140406|ENST00000267984|TLNRD1	REV__ENSG00000140406|ENST00000267984|TLNRD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.8060913085938	2	533.237124	1064.45969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.47	1	101.47	100.97	101.97	0								0	0	0	0.33861	1	25994	25994		1.8442	0.36234	1		+		24329	9371	16077	16234	32893	32893					-0.06995657084894447
YAAIQENAL	9	Unmodified	_YAAIQENAL_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;nc|ENSG00000075651|Q13393-3|PLD1;PLD1|p.N772Tfs*14|1|0.18|ENSG00000075651|chr3:171662085-171662085|T/-|frameshift_variant	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2393493652344	2	496.756007	991.497461	0.38183	0.00018968	-0.75219	-0.00037366	-0.37036	-0.00018398	496.7556149731819	53.32	0.30169	53.32	53.188	53.49	0					23	13	2	0	0	0	0.24277	1	11330	11330		14.405	6.7964	1	64187			24330	829	16078	16235	32894	32894					0.0013717717222334613
YAAKEGHTST	10	Unmodified	_YAAKEGHTST_					0	0	0		ENSG00000134461|ENST00000380094|ANKRD16	ENSG00000134461|ENST00000380094|ANKRD16	ENSG00000134461|ENST00000380094|ANKRD16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2655029296875	2	532.753995	1063.49344	0.086736	4.6209E-05	0.62963	0.00033544	0.71636	0.00038165	533.2562050527688	34.684	0.31743	34.684	34.505	34.822	0					13	12	2	0	0	0	0.31712	1	5646	5646		6.7232	0	1	14971			24331	2671	16079	16236	32895	32895					-0.03576912321477721
YAALGAGTLIL	11	Unmodified	_YAALGAGTLIL_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.78466796875	2	531.813325	1061.6121	0.30632	0.00016291	0.83546	0.00044431	1.1418	0.00060722	531.8135768229857	78.082	0.63937	78.082	77.84	78.479	0					31	21	2	0	0	0	0.3095	1	18897	18897		13.042	0.80181	1	128830	+		24332	11110	16080	16237	32896	32896					0.08375486654199449
YAALGAGTLIL	11	Unmodified	_YAALGAGTLIL_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7846069335938	2	531.813325	1061.6121	0.5748	0.00030569	0.084918	4.516E-05	0.65972	0.00035085	531.8130623218275	78.009	0.68726	78.044	77.768	78.456	0.034485					27	23	2	0	0	0	0.3095	1	18719	18719		13.042	1.5478	1	95232	+		24333	11110	16080	16237	32897	32897					0.08375486654199449
YAAVIEAVL	9	Unmodified	_YAAVIEAVL_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.7738342285156	2	474.773668	947.532783	0.024173	1.1477E-05	0.25222	0.00011975	0.27639	0.00013122	474.7736206848012	78.007	0.32504	78.007	77.772	78.097	0					15	10	2	0	0	0	0.26684	1	18870	18870		10.824	0	1	74990			24334	1016	16081	16238	32898	32898					0.056918397000458754
YAAVIEAVL	9	Unmodified	_YAAVIEAVL_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2907409667969	2	474.773668	947.532783	0.17075	8.107E-05	-0.39345	-0.0001868	-0.22269	-0.00010573	474.7734479707261	77.924	0.37893	77.959	77.796	78.175	0.034485					17	12	2	0	0	0	0.23975	1	18661	18661		14.838	0	1	92868			24335	1016	16081	16238	32899	32899					0.056918397000458754
YAAVRHLL	8	Unmodified	_YAAVRHLL_					0	0	0			REV__R3HDM2|p.S322Yfs*60|1|0.06|ENSG00000179912|chr12:57283988-57283989|-/GT|frameshift_variant	REV__R3HDM2|p.S322Yfs*60|1|0.06|ENSG00000179912|chr12:57283988-57283989|-/GT|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7789306640625	2	471.779619	941.544686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.497	1	77.531	77.031	78.031	0.034485								0	0	0	0.38822	1	18543	18543		5.7604	1.4312	1		+		24336	8045	16082	16239	32900	32900					0.07157501233893981
YACFVYRILF	10	Unmodified	_YACFVYRILF_					0	0	0		ENST00000503787.5_1_5:54460591-54460681:+|nuORF	ENST00000503787.5_1_5:54460591-54460681:+|nuORF	ENST00000503787.5_1_5:54460591-54460681:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.2802734375	3	432.22661	1293.658	0.25848	0.00011172	1.3667	0.00059073	1.6252	0.00070245	432.56168727997203	56.998	0.32756	57.064	56.991	57.318	0.066448					14	11	2	0	0	0	0.31833	1	12370	12370		2.086	0.17963	1	126350			24337	6876	16083	16240	32901	32901					0.022918085647688713
YADGIFDLF	9	Unmodified	_YADGIFDLF_					0	0	0		ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B	ENST00000491544.1_1_3:195974480-195997402:-|nuORF	ENST00000491544.1_1_3:195974480-195997402:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.7531127929688	2	530.752933	1059.49131	0.43204	0.00022931	0.069806	3.705E-05	0.50185	0.00026636	530.752845832255	100.46	0.77531	100.46	100.19	100.97	0					127	46	4	0	0	0	0.011655	4	25685	25640;25685;25726;25766		64.236	18.215	1	1028300			24338	1305	16084	16241	32902;32903;32904;32905	32903					-0.036053410593012813
YADGIFDLF	9	Unmodified	_YADGIFDLF_					0	0	0		ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B	ENST00000491544.1_1_3:195974480-195997402:-|nuORF	ENST00000491544.1_1_3:195974480-195997402:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.753173828125	2	530.752933	1059.49131	0.55873	0.00029655	-0.12027	-6.3836E-05	0.43845	0.00023271	530.7527685942027	100.37	0.85291	100.41	100.2	101.05	0.042831					117	50	4	0	0	0	0.015682	4	25519	25469;25519;25558;25599		61.357	23.383	1	1113400			24339	1305	16084	16241	32906;32907;32908;32909	32907					-0.036053410593012813
YADPTKRLEL	10	Unmodified	_YADPTKRLEL_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.329345703125	2	603.32987	1204.64519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.335	1	45.335	44.835	45.835	0								0	0	0	0.33035	1	8904	8904		11.495	0	1				24340	3357	16085	16242	32910	32910					0.05105068706257043
YADTLFDIL	9	Unmodified	_YADTLFDIL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	535.7615966796875	2	535.773865	1069.53318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.44	1	86.465	85.965	86.965	0.025169								0	0	0	0.17567	1	21264	21264		21.747	4.8044	1				24341	2784	16086	16243	32911	32911					0.001192146292396501
YADVIKYVNY	10	Unmodified	_YADVIKYVNY_					0	0	0		tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2277526855469	3	416.548406	1246.62339	0.50673	0.00021108	0.12379	5.1563E-05	0.63052	0.00026264	416.88276285575154	38.139	0.93422	38.139	37.52	38.455	0					40	31	2	0	0	0	0.31833	1	6761	6761		2.086	0.17963	1	13578			24342	13610	16087	16244	32912	32912					0.009942639576593137
YAEDIWALL	9	Unmodified	_YAEDIWALL_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.75927734375	2	547.281857	1092.54916	0.42437	0.00023225	4.4732	0.0024481	4.8976	0.0026803	547.2817685246305	91.203	0.58264	91.203	91.001	91.584	0					64	20	5	0	0	0	0.25051	1	22974	22974		7.9102	0.62092	1	572780			24343	3224	16088	16245	32913	32913					0.006589208661353041
YAEHPGDCLIF	11	Unmodified	_YAEHPGDCLIF_					0	0	0		nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1	nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.19415283203125	3	422.193746	1263.55941	0.40744	0.00017202	0.23351	9.8587E-05	0.64095	0.00027061	422.1938241002133	71.021	0.54226	71.08	70.775	71.318	0.058578					31	19	2	0	0	0	0.37533	1	16523	16523		4.7159	0	1	101790			24344	327	16089	16246	32914	32914					-0.06182839470943691
YAELSTSALSQ	11	Unmodified	_YAELSTSALSQ_					0	0	0		VSTM1|p.E216Q|1|0.15|ENSG00000189068|chr19:54041026-54041026|C/G|missense_variant	VSTM1|p.E216Q|1|0.15|ENSG00000189068|chr19:54041026-54041026|C/G|missense_variant	VSTM1|p.E216Q|1|0.15|ENSG00000189068|chr19:54041026-54041026|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.287109375	2	585.287868	1168.56118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.175	1	67.24	66.74	67.74	0.065071								0	0	0	0.31731	1	15397	15397		8.7454	1.4562	1				24345	13767	16090	16247	32915	32915					-0.016355071813450195
YAEMLYPY	8	Unmodified	_YAEMLYPY_					0	0	0			REV__ENSG00000021488|ENST00000023064|SLC7A9	REV__ENSG00000021488|ENST00000023064|SLC7A9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2368774414062	2	525.236061	1048.45757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.768	1	54.833	54.333	55.333	0.065128								0	0	0	0.38822	1	11630	11630		11.114	3.8252	1		+		24346	8000	16091	16248	32916	32916					-0.06472085822679219
YAENVNKKF	9	Unmodified	_YAENVNKKF_					0	0	0			REV__ENST00000447301.2_1_X:63843342-63843906:+|nuORF	REV__ENST00000447301.2_1_X:63843342-63843906:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2896728515625	2	556.790381	1111.56621	0.50838	0.00028306	0.055898	3.1123E-05	0.56427	0.00031418	556.790376677604	51.581	0.69445	51.651	51.077	51.771	0.069874					37	26	3	0	0	0	0.2491	1	10579	10579		8.5933	0	1	133430	+		24347	11910	16092	16249	32917	32917					0.014888414719507637
YAEQLVVEL	9	Unmodified	_YAEQLVVEL_					0	0	0		ENST00000472829.1_1_3:121448028-121448843:-|nuORF;nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	ENST00000472829.1_1_3:121448028-121448843:-|nuORF	ENST00000472829.1_1_3:121448028-121448843:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2719116210938	2	532.28714	1062.55973	0.50843	0.00027063	-1.053	-0.00056051	-0.54459	-0.00028988	532.286494327324	75.026	0.40144	75.026	74.823	75.225	0					36	14	3	0	0	0	0.11816	1	17918	17918		28.495	0.86571	1	969430			24348	4536	16093	16250	32918	32918					0.030949035205594555
YAEYDLPAII	10	Unmodified	_YAEYDLPAII_					0	0	0			REV__ENSG00000143869|ENST00000272224|GDF7	REV__ENSG00000143869|ENST00000272224|GDF7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2883911132812	2	584.300247	1166.58594	0.94458	0.00055192	-0.038595	-2.2551E-05	0.90598	0.00052937	584.3000268223504	66.302	0.91427	66.369	66.211	67.126	0.066872					97	34	4	0	0	0	0.40987	1	15214	15214		10.824	0	1	1214200	+		24349	9479	16094	16251	32919	32919					0.009311726920486763
YAFQLYNY	8	Unmodified	_YAFQLYNY_					0	0	0			REV__nc|ENSG00000117385|Q32P28-3|P3H1	REV__nc|ENSG00000117385|Q32P28-3|P3H1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2691040039062	2	541.2531	1080.49165	-0.0018442	-9.9816E-07	-0.89401	-0.00048389	-0.89586	-0.00048488	541.252679186437	33.565	1.1501	33.565	33.328	34.478	0					94	43	4	0	0	0	0.53345	1	5463	5463		5.7604	0.028577	1	379800	+		24350	12779	16095	16252	32920	32920					-0.045379213394198814
YAFRKAMSY	9	Unmodified	_YAFRKAMSY_					0	0	0			REV__ENSG00000182950|ENST00000332145|ODF3L1	REV__ENSG00000182950|ENST00000332145|ODF3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.7833251953125	2	568.781502	1135.54845	0.26663	0.00015165	2.774	0.0015778	3.0407	0.0017295	568.7831877658937	37.557	0.17446	37.641	37.57	37.744	0.084476					7	5	2	0	0	0	0.3182	2	6448	6448;6458		4.3292	0.73274	1	17232	+		24351	10583	16096	16253	32921;32922	32921					-0.013901970545475706
YAFYDEMIT	9	Unmodified	_YAFYDEMIT_					0	0	0			REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF	REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.7496337890625	2	576.749533	1151.48451	0.58285	0.00033616	0.50206	0.00028956	1.0849	0.00062572	576.7496779628558	98.147	0.58265	98.147	97.929	98.512	0					52	31	2	0	0	0	0.20367	1	24973	24973		18.135	0	1	265620	+		24352	9005	16097	16254	32923	32923					-0.08517022002160957
YAFYDEMIT	9	Unmodified	_YAFYDEMIT_					0	0	0			REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF	REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.7501831054688	2	576.749533	1151.48451	0.58812	0.0003392	0.47784	0.00027559	1.066	0.00061479	576.7496428186583	98.045	0.47276	98.087	97.959	98.431	0.041931					48	24	3	0	0	0	0.25209	1	24799	24799		12.532	0	1	142890	+		24353	9005	16097	16254	32924	32924					-0.08517022002160957
YAGEVRTF	8	Unmodified	_YAGEVRTF_					0	0	0		ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	471.7377014160156	2	471.737617	941.460681	-0.020163	-9.5114E-06	0.27096	0.00012782	0.2508	0.00011831	471.73755534153037	46.774	0.78156	46.857	46.65	47.431	0.083096					67	33	3	0	0	0	0.50159	1	9224	9224		12.532	0	1	295400			24354	5621	16098	16255	32925	32925					-0.012390746536652841
YAGLIVRR	8	Unmodified	_YAGLIVRR_					0	0	0		ENST00000526972.5_1_11:65601488-65617723:+|nuORF;ENST00000533298.5_1_11:65601362-65617723:+|nuORF	ENST00000526972.5_1_11:65601488-65617723:+|nuORF	ENST00000526972.5_1_11:65601488-65617723:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.2907409667969	2	474.292894	946.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.888	1	77.922	77.422	78.422	0.034485								0	0	0	0.38822	1	18661	18661		2.8892	0.58649	1				24355	6998	16099	16256	32926	32926					0.09581190125231842
YAGSLTTPPLT	11	Unmodified	_YAGSLTTPPLT_					0	0	0		ENSG00000174990|ENST00000649794|CA5A;KLHDC4-CA5A|1|fusion	ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3270874023438	2	560.797872	1119.58119	-0.12677	-7.1094E-05	0.2308	0.00012943	0.10403	5.8339E-05	560.7975014784349	45.684	0.60345	45.684	45.271	45.874	0					31	20	2	0	0	0	0.3105	1	9009	9009		5.7319	0	1	36180			24356	4606	16100	16257	32927	32927					0.02618288549274439
YAGSLTTPPLT	11	Unmodified	_YAGSLTTPPLT_					0	0	0		ENSG00000174990|ENST00000649794|CA5A;KLHDC4-CA5A|1|fusion	ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3261108398438	2	560.797872	1119.58119	0.16926	9.4919E-05	0.12248	6.8684E-05	0.29173	0.0001636	560.7974096501772	45.468	0.49168	45.555	45.32	45.811	0.086346					25	18	2	0	0	0	0.3105	1	8794	8794		5.7319	0	1	42071			24357	4606	16100	16257	32928	32928					0.02618288549274439
YAHDEVAPF	9	Unmodified	_YAHDEVAPF_					0	0	0		ENST00000443339.5_1_3:9471730-9475758:+|nuORF	ENST00000443339.5_1_3:9471730-9475758:+|nuORF	ENST00000443339.5_1_3:9471730-9475758:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7958374023438	2	524.740357	1047.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.612	1	61.686	61.186	62.186	0.073421								0	0	0	0.19992	1	13710	13710		18.135	6.4947	1				24358	6530	16101	16258	32929	32929					-0.055673958618626784
YAHHLLLV	8	Unmodified	_YAHHLLLV_					0	0	0		nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2	nc|ENSG00000159263|Q14190-2|SIM2	nc|ENSG00000159263|Q14190-2|SIM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2820739746094	2	483.281995	964.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.547	1	95.547	95.047	96.047	0								0	0	0	0.38822	1	24193	24193		6.3541	0	1				24359	3722	16102	16259	32930	32930					0.06574385376677583
YAHIYRCLQ	9	Unmodified	_YAHIYRCLQ_					0	0	0		NPY4R|p.R236H|1|0.6|ENSG00000204174|chr10:46461929-46461929|C/T|missense_variant	NPY4R|p.R236H|1|0.6|ENSG00000204174|chr10:46461929-46461929|C/T|missense_variant	NPY4R|p.R236H|1|0.6|ENSG00000204174|chr10:46461929-46461929|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.2903442382812	2	583.792401	1165.57025	0.19624	0.00011456	-4.0653	-0.0023733	-3.8691	-0.0022587	584.290389518744	72.214	1.1258	72.214	71.783	72.909	0					93	39	3	0	0	0	0.29105	1	17016	17016		7.9102	0.3012	1	267380			24360	7649	16103	16260	32931	32931					-0.005913923060006709
YAHNGDKSLT	10	Unmodified	_YAHNGDKSLT_					0	0	0		nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2672119140625	2	553.26727	1104.51999	0.16038	8.8735E-05	-0.1755	-9.7096E-05	-0.015111	-8.3605E-06	553.2675990365626	24.663	2.8333	24.759	24.511	27.344	0.096075					687	235	6	0	0	0	0.45945	1	3263	3263		2.9952	0.41776	1	9272800			24361	3438	16104	16261	32932	32932					-0.028092234301539065
YAHSGEHHL	9	Unmodified	_YAHSGEHHL_					0	0	0		ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7409057617188	2	525.741222	1049.46789	0.098416	5.1741E-05	-0.29128	-0.00015314	-0.19287	-0.0001014	525.7409338993001	16.797	0.25937	16.875	16.789	17.049	0.077808					66	32	3	0	0	0	0.22344	1	741	741		15.847	8.558	1	48266			24362	4139	16105	16262	32933	32933					-0.0548634205322287
YAIDEYYRM	9	Unmodified	_YAIDEYYRM_					0	0	0		KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|4|fusion;nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	KIAA0391-FAM177A1|2|fusion	KIAA0391-FAM177A1|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.2737426757812	2	612.273706	1222.53286	0.32442	0.00019863	0.35604	0.000218	0.68046	0.00041663	612.2742531538563	57.556	0.44705	57.556	57.408	57.855	0					22	15	2	0	0	0	0.10543	1	12633	12633		31.268	15.421	1	93608			24363	7371	16106	16263	32934	32934					-0.06950528362290243
YAIDEYYRM	9	Unmodified	_YAIDEYYRM_					0	0	0		KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|4|fusion;nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	KIAA0391-FAM177A1|2|fusion	KIAA0391-FAM177A1|2|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.7177124023438	2	612.273706	1222.53286	0.27927	0.00017099	0.70083	0.0004291	0.9801	0.00060009	612.2741260691913	57.518	0.36018	57.586	57.337	57.697	0.068375					20	13	2	0	0	0	0.18398	1	12479	12479		20.415	10.871	1	74038			24364	7371	16106	16263	32935	32935					-0.06950528362290243
YAIDEYYRM	9	Oxidation (M)	_YAIDEYYRM(Oxidation (M))_		YAIDEYYRM(1)		YAIDEYYRM(58)	0	0	1		KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|4|fusion;nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	KIAA0391-FAM177A1|2|fusion	KIAA0391-FAM177A1|2|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.271484375	2	620.271164	1238.52777	-0.22282	-0.00013821	0.28234	0.00017513	0.059526	3.6922E-05	620.2713438040305	49.156	0.58561	49.156	49.004	49.59	0					29	20	2	0	0	0	0.064059	1	10053	10053		57.722	37.307	1	200190			24365	7371	16106	16264	32936	32936		330			-0.08194832224921811
YAIDRQSG	8	Unmodified	_YAIDRQSG_					0	0	0			REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.22515869140625	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.692	1	94.692	94.192	95.192	0								0	0	0	0.38822	1	23931	23931		6.3541	0	1		+		24366	8618	16107	16265	32937	32937					-0.022685491760853438
YAIDRQSG	8	Unmodified	_YAIDRQSG_					0	0	0			REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2254333496094	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.687	1	94.726	94.226	95.226	0.038086								0	0	0	0.38822	1	23771	23771		6.3541	0	1		+		24367	8618	16107	16265	32938	32938					-0.022685491760853438
YAIEVDPVL	9	Unmodified	_YAIEVDPVL_					0	0	0		NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.2844543457031	2	509.776408	1017.53826	0.32872	0.00016757	-0.49689	-0.0002533	-0.16816	-8.5726E-05	509.7761134796905	76.256	0.518	76.256	76.097	76.615	0					37	21	3	0	0	0	0.19376	1	18324	18324		25.399	9.5521	1	1171500			24368	2191	16108	16266	32939	32939					0.030195184918625273
YAIEVDPVL	9	Unmodified	_YAIEVDPVL_					0	0	0		NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.28460693359375	2	509.776408	1017.53826	0.34261	0.00017466	-0.34463	-0.00017568	-0.0020151	-1.0272E-06	509.7762149159892	76.262	0.57481	76.301	76.095	76.67	0.03923					32	23	2	0	0	0	0.21603	1	18139	18139		20.454	8.8133	1	1053900			24369	2191	16108	16266	32940	32940					0.030195184918625273
YAIEVGFRF	9	Unmodified	_YAIEVGFRF_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7843017578125	2	551.290017	1100.56548	0.77733	0.00042854	-1.3287	-0.00073248	-0.55134	-0.00030395	551.7920533724092	84.138	0.28368	84.138	83.931	84.215	0					19	9	3	0	0	0	0.25174	1	20723	20723		7.2892	0	1	84710	+		24370	9177	16109	16267	32941	32941					0.019220468228922982
YAIEVGFRF	9	Unmodified	_YAIEVGFRF_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	551.290017	1100.56548	0.52327	0.00028847	-0.91802	-0.0005061	-0.39476	-0.00021763	551.7921922813201	84.127	0.29337	84.149	83.948	84.241	0.021744	0.0057596	0.00017222	NaN	7.2892	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101970	+		24371	9177	16109	16267							0.019220468228922982
YAIREEIVL	9	Unmodified	_YAIREEIVL_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.3162231445312	2	553.316232	1104.61791	0.5659	0.00031312	-0.31038	-0.00017174	0.25551	0.00014138	553.3160168205285	59.989	0.91124	59.989	59.758	60.669	0					82	32	4	0	0	0	0.032194	2	13340	13340;13382		49.554	24.563	1	994690			24372	5260	16110	16268	32942;32943	32942					0.06978585165848017
YAIREEIVL	9	Unmodified	_YAIREEIVL_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3163452148438	2	553.316232	1104.61791	0.38364	0.00021228	-0.040295	-2.2296E-05	0.34335	0.00018998	553.3161669163577	59.89	0.84261	59.963	59.735	60.577	0.072338					76	30	4	0	0	0	0.056368	3	13170	13170;13219;13279		41.956	17.761	1	919680			24373	5260	16110	16268	32944;32945;32946	32944					0.06978585165848017
YAISATVFTV	10	Unmodified	_YAISATVFTV_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.276123046875	2	536.289682	1070.56481	0.55123	0.00029562	1.3975E-05	7.4947E-09	0.55125	0.00029563	536.2895601307505	60.287	0.765	60.287	60.069	60.834	0					68	27	3	0	0	0	0.3077	1	13543	13543		21.747	2.4897	1	499550			24374	758	16111	16269	32947	32947					0.03235207383158922
YAISSSVISF	10	Unmodified	_YAISSSVISF_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2761840820312	2	537.279315	1072.54408	-0.01201	-6.4525E-06	0.86497	0.00046473	0.85296	0.00045828	537.2761912754773	58.54	0.73537	58.54	58.327	59.062	0					67	25	6	0	0	0	0.023231	1	12909	12909		65.235	25.278	1	637040			24375	4994	16112	16270	32948	32948					0.010706170035291507
YAISSSVISF	10	Unmodified	_YAISSSVISF_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2763061523438	2	537.279315	1072.54408	0.40462	0.00021739	0.15605	8.3844E-05	0.56067	0.00030124	537.2761929329606	58.431	0.59526	58.502	58.322	58.917	0.070477					69	20	5	0	0	0	0.023231	1	12725	12725		65.235	29.108	1	500910			24376	4994	16112	16270	32949	32949					0.010706170035291507
YAKIVPAAASA	11	Unmodified	_YAKIVPAAASA_					0	0	0			REV__ENSG00000213995|ENST00000680254|NAXD	REV__ENSG00000213995|ENST00000680254|NAXD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7478637695312	2	531.303124	1060.5917	-0.017193	-9.1348E-06	-3.6659	-0.0019477	-3.6831	-0.0019568	531.3009644159517	28.81	0.19933	28.888	28.744	28.943	0.078287					19	13	2	0	0	0	0.31083	1	3827	3827		2.7352	0.23671	1	13340	+		24377	10997	16113	16271	32950	32950					0.06382315994369492
YAKRMLFG	8	Unmodified	_YAKRMLFG_					0	0	0			REV__ENST00000379297.5_1_X:23722013-23724857:-|nuORF	REV__ENST00000379297.5_1_X:23722013-23724857:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7444152832031	2	493.26803	984.521507	-0.2655	-0.00013096	1.1407	0.00056266	0.87519	0.0004317	493.26929466481147	42.717	0.7261	42.717	42.248	42.974	0					54	24	3	0	0	0	0.3576	1	8190	8190		2.8892	0	1	119950	+		24378	8929	16114	16272	32951	32951					0.02862739124930158
YALCLHTY	8	Unmodified	_YALCLHTY_					0	0	0			REV__nc|ENSG00000170927|P08F94-2|PKHD1	REV__nc|ENSG00000170927|P08F94-2|PKHD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.2464904785156	2	492.236396	982.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.997	1	43.087	42.587	43.587	0.089764								0	0	0	0.38822	1	8070	8070		10.183	0	1		+		24379	10233	16115	16273	32952	32952					-0.03369246382987967
YALDLIDKL	9	Unmodified	_YALDLIDKL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.3057250976562	2	532.305332	1062.59611	0.24904	0.00013257	0.54587	0.00029057	0.79492	0.00042314	532.3054392649763	73.985	0.48903	73.985	73.798	74.287	0					32	17	3	0	0	0	0.037847	1	17637	17637		69.338	31.364	1	377550			24380	2809	16116	16274	32953	32953					0.06731780417271693
YALDLIDKL	9	Unmodified	_YALDLIDKL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.3055419921875	2	532.305332	1062.59611	0.55417	0.00029499	0.10491	5.5842E-05	0.65908	0.00035083	532.3054829797532	73.969	0.43956	74.018	73.848	74.287	0.048546					28	15	3	0	0	0	0.10323	1	17479	17479		47.732	21.464	1	259440			24381	2809	16116	16274	32954	32954					0.06731780417271693
YALLEHHIF	9	Unmodified	_YALLEHHIF_					0	0	0			REV__ENST00000593203.1_1_19:10934344-10943016:+|nuORF	REV__ENST00000593203.1_1_19:10934344-10943016:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.32421875	2	571.803291	1141.59203	0.56549	0.00032335	2.1363	0.0012216	2.7018	0.0015449	571.803035306223	67.167	0.96445	67.167	66.807	67.771	0					72	35	3	0	0	0	0.24749	1	15670	15670		9.3474	4.1168	1	230210	+		24382	7893	16117	16275	32955	32955					0.026897357142161127
YALLYDPVI	9	Unmodified	_YALLYDPVI_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7536010742188	2	533.794601	1065.57465	0.47863	0.00025549	-1.6131	-0.00086108	-1.1345	-0.00060559	534.2942772939134	85.557	1.3018	85.557	85.311	86.613	0					86	53	3	0	0	0	0.20004	1	21182	21182		23.148	11.508	1	204900			24383	5132	16118	16276	32956	32956					0.044483953885674055
YALLYDPVI	9	Unmodified	_YALLYDPVI_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.75341796875	2	533.794601	1065.57465	0.77332	0.0004128	-1.9021	-0.0010153	-1.1288	-0.00060253	534.2941787960679	85.604	1.3513	85.63	85.186	86.537	0.025169					90	52	3	0	0	0	0.2298	1	21030	21030		16.942	1.0951	1	147080			24384	5132	16118	16276	32957	32957					0.044483953885674055
YALLYSQEL	9	Unmodified	_YALLYSQEL_					0	0	0		ENST00000592495.1_1_19:11959591-11959708:+|nuORF	ENST00000592495.1_1_19:11959591-11959708:+|nuORF	ENST00000592495.1_1_19:11959591-11959708:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7901000976562	2	550.28714	1098.55973	0.33616	0.00018499	-0.27041	-0.0001488	0.065756	3.6185E-05	550.2867647563774	87.367	0.39458	87.394	87.256	87.651	0.027573					27	15	3	0	0	0	0.01943	2	21541	21541;21586		58.679	3.901	1	233490			24385	7270	16119	16277	32958;32959	32958					0.01438903520556778
YALLYSQEL	9	Unmodified	_YALLYSQEL_					0	0	0		ENST00000592495.1_1_19:11959591-11959708:+|nuORF	ENST00000592495.1_1_19:11959591-11959708:+|nuORF	ENST00000592495.1_1_19:11959591-11959708:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	550.28714	1098.55973	0.33616	0.00018499	-0.27041	-0.0001488	0.065756	3.6185E-05	550.2867647563774	87.367	0.39458	87.394	87.256	87.651	0.027573	-0.046052	-9.3475E-05	NaN	58.679	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233490			24386	7270	16119	16277							0.01438903520556778
YALMWKMQFF	10	Unmodified	_YALMWKMQFF_					0	0	0		ENST00000472669.5_1_6:108365991-108372269:-|nuORF	ENST00000472669.5_1_6:108365991-108372269:-|nuORF	ENST00000472669.5_1_6:108365991-108372269:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.22515869140625	3	455.55585	1363.64572	0.4652	0.00021193	1.897	0.0008642	2.3622	0.0010761	455.5567740390912	94.738	0.30534	94.738	94.59	94.896	0					17	10	2	0	0	0	0.31687	1	23931	23931		8.9762	3.1081	1	59400			24387	6685	16120	16278	32960	32960					-0.021555511699261842
YALMWKMQFF	10	Unmodified	_YALMWKMQFF_					0	0	0		ENST00000472669.5_1_6:108365991-108372269:-|nuORF	ENST00000472669.5_1_6:108365991-108372269:-|nuORF	ENST00000472669.5_1_6:108365991-108372269:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2254333496094	3	455.55585	1363.64572	0.18631	8.4875E-05	2.1924	0.00099875	2.3787	0.0010836	455.8911554206855	94.679	0.29888	94.718	94.588	94.887	0.038086					18	11	2	0	0	0	0.31687	1	23771	23771		8.9762	3.1081	1	74891			24388	6685	16120	16278	32961	32961					-0.021555511699261842
YALNFKSAI	9	Unmodified	_YALNFKSAI_					0	0	0			REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.78515625	2	513.784567	1025.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.325	1	69.325	68.825	69.825	0								0	0	0	0.1048	1	16201	16201		32.305	3.8186	1		+		24389	13055	16121	16279	32962	32962					0.04282644448608153
YALNFKSAI	9	Unmodified	_YALNFKSAI_					0	0	0			REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.78466796875	2	513.784567	1025.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.351	1	69.351	68.851	69.851	0								0	0	0	0.15116	1	16209	16209		25.399	3.6527	1		+		24390	13055	16121	16279	32963	32963					0.04282644448608153
YALNFKSAI	9	Unmodified	_YALNFKSAI_					0	0	0			REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7842407226562	2	513.784567	1025.55458	0.22376	0.00011496	-0.12272	-6.3053E-05	0.10103	5.191E-05	513.7845381269035	69.168	0.33028	69.23	69.168	69.498	0.062126					20	12	2	0	0	0	0.19398	1	16004	16004		19.257	3.4098	1	224970	+		24391	13055	16121	16279	32964	32964					0.04282644448608153
YALRSLRIE	9	Unmodified	_YALRSLRIE_					0	0	0		nc|ENSG00000090857|Q8NCN5-2|PDPR;ENSG00000090857|ENST00000288050|PDPR	nc|ENSG00000090857|Q8NCN5-2|PDPR	nc|ENSG00000090857|Q8NCN5-2|PDPR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.2679443359375	2	560.827298	1119.64004	0.17416	9.7675E-05	-1.2182	-0.00068318	-1.044	-0.00058551	560.8269055806156	45.78	0.66878	45.865	45.606	46.275	0.085617					53	25	3	0	0	0	0.25845	1	8946	8946		2.0598	0.21551	1	80159			24392	1048	16122	16280	32965	32965					0.08500809634256257
YALSLCSFF	9	Unmodified	_YALSLCSFF_					0	0	0			REV__ENST00000471357.1_1_3:156800673-156800769:-|nuORF	REV__ENST00000471357.1_1_3:156800673-156800769:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.241455078125	2	525.751879	1049.4892	0.46134	0.00024255	-0.51302	-0.00026972	-0.051675	-2.7168E-05	525.751709133953	70.745	0.30453	70.745	70.583	70.888	0					17	10	2	0	0	0	0.24749	1	16672	16672		9.3474	0	1	58795	+		24393	12030	16123	16281	32966	32966					-0.033560930687599466
YALVQYALPL	10	Unmodified	_YALVQYALPL_					0	0	0		IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;ENSG00000133704|ENST00000256079|IPO8;IPO8|p.S278Afs*17|1|0.29|ENSG00000133704|chr12:30674067-30674067|T/-|frameshift_variant	IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.8287963867188	2	575.828975	1149.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.08	1	103.08	102.58	103.58	0								0	0	0	0.33681	1	26483	26483		3.9444	0	1				24394	2633	16124	16282	32967	32967					0.07456059688274763
YALVQYALPL	10	Unmodified	_YALVQYALPL_					0	0	0		IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;ENSG00000133704|ENST00000256079|IPO8;IPO8|p.S278Afs*17|1|0.29|ENSG00000133704|chr12:30674067-30674067|T/-|frameshift_variant	IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.8284301757812	2	575.828975	1149.6434	0.40369	0.00023246	-0.59698	-0.00034376	-0.1933	-0.00011131	575.8286531347799	102.94	0.3027	102.98	102.83	103.13	0.040916					31	23	2	0	0	0	0.45443	1	26278	26278		3.9444	0	1	54059			24395	2633	16124	16282	32968	32968					0.07456059688274763
YAMKILNKW	9	Unmodified	_YAMKILNKW_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.805908203125	2	583.823169	1165.63179	0.59389	0.00034673	-0.66424	-0.0003878	-0.070351	-4.1073E-05	583.8228215163186	73.523	0.45914	73.575	73.42	73.88	0.052574					43	17	3	0	0	0	0.28587	1	17380	17380		8.5933	1.304	1	397970			24396	5398	16125	16283	32969	32969					0.05559539393289015
YAMVKLLLF	9	Unmodified	_YAMVKLLLF_					0	0	0		nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.24951171875	2	549.325014	1096.63547	0.55841	0.00030675	0.89489	0.00049159	1.4533	0.00079833	549.3255177893108	85.544	0.085297	85.544	85.493	85.579	0					7	4	2	0	0	0	0.25416	1	21139	21139		5.2307	0	1	61471			24397	3440	16126	16284	32970	32970					0.0910220916716753
YANKYPFIY	9	Unmodified	_YANKYPFIY_					0	0	0		tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.24609375	2	589.797675	1177.5808	0.68715	0.00040528	-1.8606	-0.0010974	-1.1734	-0.00069209	590.29583484591	64.939	0.44865	64.939	64.775	65.224	0					31	16	3	0	0	0	0.23598	1	14830	14830		15.847	1.0089	1	117850			24398	13701	16127	16285	32971	32971					-0.0008908637989861745
YAPIQNKIL	9	Unmodified	_YAPIQNKIL_					0	0	0			REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1	REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.3140869140625	2	530.313492	1058.61243	0.22664	0.00012019	0.36945	0.00019592	0.59609	0.00031612	530.3135991574352	73.992	1.1624	73.992	73.661	74.823	0					89	42	3	0	0	0	0.21398	1	17552	17552		16.942	0.79319	1	2169400	+		24399	13255	16128	16286	32972	32972					0.08546906374044738
YAPIQNKIL	9	Unmodified	_YAPIQNKIL_					0	0	0			REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1	REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.3131713867188	2	530.313492	1058.61243	0.46352	0.00024581	-0.023131	-1.2267E-05	0.44039	0.00023354	530.3133669213204	73.922	1.0285	73.97	73.645	74.673	0.048538					95	37	4	0	0	0	0.25979	1	17374	17374		11.64	0.14559	1	1175300	+		24400	13255	16128	16286	32973	32973					0.08546906374044738
YAPNRRKSRRF	11	Unmodified	_YAPNRRKSRRF_					0	0	0		ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.7154235839844	3	484.276126	1449.80655	0.24187	0.00011713	1.7415	0.00084339	1.9834	0.00096052	484.6112908564751	69.598	0.26201	69.598	69.47	69.732	0					14	8	2	0	0	0	0.31096	1	16279	16279		1.4551	0.12547	1	94160			24401	364	16129	16287	32974	32974					0.0996367558266229
YAPNRRKSRRF	11	Unmodified	_YAPNRRKSRRF_					0	0	0		ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7154541015625	3	484.276126	1449.80655	0.019526	9.456E-06	1.5806	0.00076544	1.6001	0.00077489	484.27710761282316	69.599	0.30287	69.661	69.449	69.752	0.062126					17	10	2	0	0	0	0.311	1	16151	16151		0.50596	0.051438	1	74206			24402	364	16129	16287	32975	32975					0.0996367558266229
YAPPYVLE	8	Unmodified	_YAPPYVLE_					0	0	0			REV__nc|ENSG00000160685|O15156-2|ZBTB7B	REV__nc|ENSG00000160685|O15156-2|ZBTB7B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.2445373535156	2	476.244744	950.474934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.99	1	85.99	85.49	86.49	0								0	0	0	0.38413	1	21286	21286		20.871	0	1		+		24403	9854	16130	16288	32976	32976					-0.0022842222537065027
YAQDEHLITF	10	Unmodified	_YAQDEHLITF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.7974243164062	2	618.798403	1235.58225	-0.3933	-0.00024337	-2.0022	-0.0012389	-2.3955	-0.0014823	618.7974567717429	59.158	0.45104	59.158	58.979	59.43	0					28	16	2	0	0	0	0.14333	1	13116	13116		40.239	16.219	1	338660			24404	3192	16131	16289	32977	32977					-0.02611497081829839
YAQDEHLITF	10	Unmodified	_YAQDEHLITF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	618.798403	1235.58225	-0.18361	-0.00011362	-2.3943	-0.0014816	-2.5779	-0.0015952	618.7970619561943	59.094	0.4052	59.164	59.02	59.425	0.070477	0.0027963	-0.00028565	NaN	40.239	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213990			24405	3192	16131	16289							-0.02611497081829839
YAQDLYVI	8	Unmodified	_YAQDLYVI_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7528991699219	2	492.755475	983.496398	0.5171	0.0002548	-3.0245	-0.0014903	-2.5074	-0.0012355	492.7543454929162	60.666	1.1487	60.666	60.069	61.218	0					96	41	4	0	0	0	0.50159	1	13697	13697		12.532	0.89125	1	455150			24406	3362	16132	16290	32978	32978					0.003989628033423287
YAQDLYVI	8	Unmodified	_YAQDLYVI_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.7549133300781	2	492.755475	983.496398	0.26099	0.00012861	-3.0082	-0.0014823	-2.7472	-0.0013537	492.7544562330204	60.549	1.1688	60.622	60.066	61.235	0.073418					77	40	3	0	0	0	0.50159	2	13505	13505;13540		12.532	0.89125	1	464130			24407	3362	16132	16290	32979;32980	32979					0.003989628033423287
YAQNNFLAN	9	Unmodified	_YAQNNFLAN_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.763671875	2	527.751256	1053.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.197	1	45.285	44.785	45.785	0.08754								0	0	0	0.25692	1	8734	8734		7.9102	0	1		+		24408	10137	16133	16291	32981	32981					-0.03664591113283677
YARETLLL	8	Unmodified	_YARETLLL_					0	0	0			REV__nc|ENSG00000139132|Q96M96|FGD4	REV__nc|ENSG00000139132|Q96M96|FGD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.7867431640625	2	489.784567	977.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.248	1	62.321	61.821	62.821	0.073421								0	0	0	0.38822	1	13903	13903		7.2892	0	1		+		24409	9333	16134	16292	32982	32982					0.06490644448626881
YARHNRSPDM	10	Unmodified	_YARHNRSPDM_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.1953125	3	416.196373	1245.56729	0.42838	0.00017829	-2.4873	-0.0010352	-2.0589	-0.00085693	416.19502516943606	95.599	0.27745	95.599	95.575	95.852	0					20	11	2	0	0	0	0.45632	1	24213	24213		3.5871	0.5148	1	247310	+		24410	8320	16135	16293	32983	32983					-0.045672674308207206
YARKRLVI	8	Unmodified	_YARKRLVI_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8309326171875	2	509.829643	1017.64473	0.43609	0.00022233	-2.6583	-0.0013553	-2.2222	-0.0011329	510.3288369904477	101.38	0.075058	101.42	101.36	101.44	0.042656					5	4	2	0	0	0	0.3576	1	25799	25799		2.8892	0	1	21330			24411	2180	16136	16294	32984	32984					0.13661738567691373
YARQKLWLY	9	Unmodified	_YARQKLWLY_					0	0	0			REV__ENSG00000127366|ENST00000247883|TAS2R5	REV__ENSG00000127366|ENST00000247883|TAS2R5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.32373046875	2	620.84549	1239.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.07	1	115.07	114.57	115.57	0								0	0	0	0.29233	1	29362	29362		0.6015	0.076735	1		+		24412	8996	16137	16295	32985	32985					0.06617686530989886
YARRRVSL	8	Unmodified	_YARRRVSL_					0	0	0		ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.79730224609375	2	510.8067	1019.59885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.468	1	64.537	64.037	65.037	0.068916								0	0	0	0.38822	1	14578	14578		8.5933	0.68312	1				24413	1991	16138	16296	32986	32986					0.08983093385461416
YARSLVFTF	9	Unmodified	_YARSLVFTF_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.27978515625	2	552.297842	1102.58113	0.56626	0.00031274	-3.8024	-0.0021001	-3.2362	-0.0017873	552.2957128247687	55.699	0.23145	55.699	55.551	55.782	0					19	7	3	0	0	0	0.21398	1	12064	12064		16.942	1.0951	1	82364	+		24414	10450	16139	16297	32987	32987					0.033943333399292897
YARSLVFTF	9	Unmodified	_YARSLVFTF_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	552.297842	1102.58113	0.56626	0.00031274	-3.8024	-0.0021001	-3.2362	-0.0017873	552.2957128247687	55.699	0.23145	55.699	55.551	55.782	0	0.0087843	-9.6027E-05	NaN	16.942	19	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82364	+		24415	10450	16139	16297							0.033943333399292897
YASALRATTA	10	Unmodified	_YASALRATTA_					0	0	0		tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7747802734375	2	512.774731	1023.53491	0.054695	2.8046E-05	-0.064236	-3.2939E-05	-0.0095415	-4.8926E-06	512.7746665532776	22.402	0.28136	22.504	22.38	22.662	0.10178					44	26	2	0	0	0	0.4753	1	2032	2032		0	0	1	31967			24416	13527	16140	16298	32988	32988					0.024082684378299746
YASFIKEIQ	9	Unmodified	_YASFIKEIQ_					0	0	0			REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1	REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8136596679688	2	549.795132	1097.57571	0.16047	8.8227E-05	0.66871	0.00036766	0.82919	0.00045588	549.7958929766492	73.582	0.74017	73.582	73.313	74.053	0					90	26	4	0	0	0	0.19398	1	17608	17608		19.257	2.1441	1	2583500	+		24417	13061	16141	16299	32989	32989					0.030826097574845335
YASLETVGLF	10	Unmodified	_YASLETVGLF_					0	0	0			REV__nc|ENSG00000151136|A6QL63-4|ABTB3	REV__nc|ENSG00000151136|A6QL63-4|ABTB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2871704101562	2	550.28714	1098.55973	0.42722	0.0002351	-0.14255	-7.8441E-05	0.28468	0.00015666	550.2868154257857	87.486	0.4449	87.486	87.263	87.708	0					37	16	3	0	0	0	0.083805	1	21755	21755		48.346	2.3249	1	253360	+		24418	9641	16142	16300	32990	32990					0.01438903520556778
YASPADRQL	9	Unmodified	_YASPADRQL_					0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7590637207031	2	510.759081	1019.50361	0.020673	1.0559E-05	0.30362	0.00015508	0.32429	0.00016563	510.7592209580501	33.817	0.39146	33.891	33.695	34.086	0.074322					28	17	2	0	0	0	0.27332	1	5299	5299		10.074	0	1	40719			24419	386	16143	16301	32991	32991					-0.005363045962326396
YASPADRQL	9	Unmodified	_YASPADRQL_					0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	510.759081	1019.50361	0.020673	1.0559E-05	0.30362	0.00015508	0.32429	0.00016563	510.7592209580501	33.817	0.39146	33.891	33.695	34.086	0.074322	-0.0018162	6.2237E-05	NaN	10.074	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40719			24420	386	16143	16301							-0.005363045962326396
YASPIAILI	9	Unmodified	_YASPIAILI_					0	0	0			REV__ENSG00000101292|ENST00000678254|PROKR2	REV__ENSG00000101292|ENST00000678254|PROKR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.79156494140625	2	480.791861	959.569169	0.21029	0.00010111	-0.38195	-0.00018364	-0.17166	-8.2531E-05	480.7916204483838	100.46	0.51212	100.5	100.32	100.83	0.042839					49	28	2	0	0	0	0.26684	1	25562	25562		10.824	0	1	192320	+		24421	8418	16144	16302	32992	32992					0.087767165967648
YASVEVSKL	9	Unmodified	_YASVEVSKL_					0	0	0		CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant;nc|ENSG00000102974|P49711-2|CTCF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF	CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant	CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.2738037109375	2	498.274032	994.533512	-0.096811	-4.8238E-05	-0.17683	-8.8111E-05	-0.27364	-0.00013635	498.2737241246895	44.51	0.36737	44.51	44.298	44.665	0					27	12	3	0	0	0	0.064247	1	8644	8644		40.239	11.158	1	88744			24422	251	16145	16303	32993	32993					0.036026343490902946
YASVEVSKL	9	Unmodified	_YASVEVSKL_					0	0	0		CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant;nc|ENSG00000102974|P49711-2|CTCF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF	CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant	CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.2741394042969	2	498.274032	994.533512	0.074081	3.6913E-05	-0.44816	-0.00022331	-0.37408	-0.00018639	498.2736980660993	44.342	0.34754	44.431	44.335	44.682	0.088924					18	11	2	0	0	0	0.11198	1	8482	8482		29.841	11.694	1	75407			24423	251	16145	16303	32994	32994					0.036026343490902946
YATELMRRQ	9	Unmodified	_YATELMRRQ_					0	0	0			REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2883911132812	2	584.30059	1166.58663	0.94458	0.00055192	-0.62517	-0.00036529	0.3194	0.00018663	584.3000268223504	66.302	0.91427	66.369	66.211	67.126	0.066872					97	34	4	0	0	0	0.24021	1	15275	15275		13.906	1.6654	1	1214200	+		24424	7884	16146	16304	32995	32995					0.009996888600880993
YATHPFKF	8	Unmodified	_YATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7578125	2	505.758352	1009.50215	-0.63268	-0.00031998	-0.38628	-0.00019536	-1.019	-0.00051535	505.7580812512956	42.032	0.71722	42.032	41.8	42.517	0					43	24	3	0	0	0	0.024005	2	7897	7897;7946		74.929	53.182	1	108580			24425	1737	16147	16305	32996;32997	32996					-0.0022189389434288387
YATHPFKF	8	Unmodified	_YATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.75799560546875	2	505.758352	1009.50215	-0.40648	-0.00020558	-0.15548	-7.8634E-05	-0.56195	-0.00028421	505.75812259144595	41.955	0.47338	42.045	41.869	42.342	0.089764					36	18	3	0	0	0	0.022411	2	7740	7740;7784		88.904	61.275	1	153170			24426	1737	16147	16305	32998;32999	32998					-0.0022189389434288387
YATTVPEH	8	Unmodified	_YATTVPEH_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.2213134765625	2	459.2218	916.429047	-0.10865	-4.9896E-05	-0.57021	-0.00026185	-0.67887	-0.00031175	459.22146914542765	44.342	0.26558	44.431	44.274	44.539	0.088924					13	8	2	0	0	0	0.53345	1	8492	8492		5.7604	0	1	37385			24427	3123	16148	16306	33000	33000					-0.03251067407620667
YATVFLVG	8	Unmodified	_YATVFLVG_					0	0	0		RASA2|p.S198F|1|0.24|ENSG00000155903|chr3:141553922-141553922|C/T|missense_variant	RASA2|p.S198F|1|0.24|ENSG00000155903|chr3:141553922-141553922|C/T|missense_variant	RASA2|p.S198F|1|0.24|ENSG00000155903|chr3:141553922-141553922|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8821716308594	2	435.242004	868.469455	0.36008	0.00015672	3.5814	0.0015588	3.9415	0.0017155	435.2442818876668	65.566	0.14038	65.633	65.57	65.71	0.066872					6	5	2	0	0	0	0.3576	1	14896	14896		2.5775	0	1	36791			24428	7680	16149	16307	33001	33001					0.0299589898281738
YAVRDTIAL	9	Unmodified	_YAVRDTIAL_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.28753662109375	2	511.287474	1020.5604	0.18714	9.5682E-05	0.27514	0.00014068	0.46228	0.00023636	511.28770724330695	52.695	0.71722	52.695	52.396	53.113	0					51	25	3	0	0	0	0.10543	2	11111	11111;11160		31.268	9.7314	1	220290			24429	1284	16150	16308	33002;33003	33002					0.05093742960275449
YAVRDTIAL	9	Unmodified	_YAVRDTIAL_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2876281738281	2	511.287474	1020.5604	0.32248	0.00016488	0.18825	9.6252E-05	0.51073	0.00026113	511.28785898436365	52.635	0.59289	52.702	52.493	53.085	0.067169					50	23	3	0	0	0	0.13341	1	10967	10967		26.268	2.2476	1	156840			24430	1284	16150	16308	33004	33004					0.05093742960275449
YAVTEAGFAA	10	Unmodified	_YAVTEAGFAA_					0	0	0		tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2441711425781	2	500.242732	998.470912	-0.092091	-4.6068E-05	-1.4356	-0.00071814	-1.5277	-0.00076421	500.24206039962957	31.583	0.79629	31.583	31.387	32.183	0					79	33	4	0	0	0	0.21218	2	4834	4826;4834		32.305	2.2509	1	287490			24431	13669	16151	16309	33005;33006	33006					-0.028385117190964593
YAVTEAGFAA	10	Unmodified	_YAVTEAGFAA_					0	0	0		tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2435607910156	2	500.242732	998.470912	-0.044891	-2.2456E-05	-1.4067	-0.00070371	-1.4516	-0.00072616	500.24201024816205	31.548	0.93323	31.622	31.421	32.355	0.073782					77	43	2	0	0	0	0.22666	1	4695	4695		30.637	7.4881	1	260840			24432	13669	16151	16309	33007	33007					-0.028385117190964593
YAWEQPTL	8	Unmodified	_YAWEQPTL_					0	0	0			REV__ENST00000404569.5_3_22:39900474-39905499:+|nuORF	REV__ENST00000404569.5_3_22:39900474-39905499:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.2444763183594	2	504.245275	1006.476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.669	1	74.669	74.169	75.169	0								0	0	0	0.38439	1	17832	17832		20.454	3.3407	1		+		24433	11760	16152	16310	33008	33008					-0.026982078564628864
YAWEQPTL	8	Unmodified	_YAWEQPTL_					0	0	0			REV__ENST00000404569.5_3_22:39900474-39905499:+|nuORF	REV__ENST00000404569.5_3_22:39900474-39905499:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	504.24395751953125	2	504.245275	1006.476	0.35596	0.00017949	-2.1272	-0.0010726	-1.7712	-0.00089312	504.24415541315824	74.579	0.36569	74.628	74.45	74.816	0.048546					21	12	2	0	0	0	0.39599	1	17655	17655		26.884	4.1474	1	109020	+		24434	11760	16152	16310	33009	33009					-0.026982078564628864
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2533569335938	2	554.253297	1106.49204	0.63461	0.00035173	-0.29476	-0.00016337	0.33985	0.00018836	554.2530154921953	47.312	0.44537	47.395	47.151	47.597	0.083096					27	17	2	0	0	0	0.038996	1	9360	9360		45.74	0	1	205130			24435	5488	16153	16311	33010	33010					-0.05694546410222756
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	554.253297	1106.49204	0.57323	0.00031772	-0.41935	-0.00023242	0.15389	8.5293E-05	554.2529664848252	47.362	0.50138	47.362	47.17	47.672	0	-0.016549	-4.5104E-05	NaN	45.74	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283890			24436	5488	16153	16311							-0.05694546410222756
YAYDGKDYLAL	11	Unmodified	_YAYDGKDYLAL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.313232421875	2	646.313886	1290.61322	0.46086	0.00029786	0.28496	0.00018417	0.74582	0.00048203	646.3138267607872	60.246	0.59839	60.246	60.045	60.643	0					41	21	3	0	0	0	0.20498	1	13424	13424		29.437	0	1	209910			24437	5488	16154	16312	33011	33011					-0.020463437675516616
YAYDGKDYLAL	11	Unmodified	_YAYDGKDYLAL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	646.3143310546875	2	646.313886	1290.61322	0.078336	5.063E-05	0.51023	0.00032977	0.58857	0.0003804	646.3141222233158	60.129	0.39564	60.201	60.065	60.461	0.072338					29	13	3	0	0	0	0.2497	1	13271	13271		23.801	0	1	213920			24438	5488	16154	16312	33012	33012					-0.020463437675516616
YAYFAFHY	8	Unmodified	_YAYFAFHY_					0	0	0			REV__ENST00000592618.5_1_19:1010351-1011343:-|nuORF	REV__ENST00000592618.5_1_19:1010351-1011343:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2396850585938	2	541.242535	1080.47052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.926	1	42.926	42.426	43.426	0								0	0	0	0.38822	1	8176	8176		6.3541	0.59368	1		+		24439	10551	16155	16313	33013	33013					-0.0664988664827888
YCAHPSMTTT	10	Unmodified	_YCAHPSMTTT_					0	0	0			REV__nc|ENSG00000074047|P10070-2|GLI2	REV__nc|ENSG00000074047|P10070-2|GLI2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.232421875	2	556.230984	1110.44742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.086	1	33.086	32.586	33.586	0								0	0	0	0.33877	1	5214	5214		1.6526	0.96225	1		+		24440	8181	16156	16314	33014	33014					-0.10339016819580138
YCAMRDEINEL	11	Unmodified	_YCAMRDEINEL_					0	0	0		nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141	nc|ENSG00000163492|Q6ZP82-1|CCDC141	nc|ENSG00000163492|Q6ZP82-1|CCDC141	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.25213623046875	3	452.868934	1355.58497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.784	1	67.848	67.348	68.348	0.063507								0	0	0	0.33799	1	15580	15580		1.4551	0.49284	1				24441	3908	16157	16315	33015	33015					-0.0785973301078684
YCAVVGLAN	9	Unmodified	_YCAVVGLAN_					0	0	0			REV__ENST00000507805.5_1_5:94852367-94852451:-|nuORF	REV__ENST00000507805.5_1_5:94852367-94852451:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.866943359375	2	455.228571	908.442588	0.12591	5.7317E-05	-0.10073	-4.5857E-05	0.025174	1.146E-05	455.2283632392754	34.177	0.46901	34.177	34.009	34.478	0					29	18	2	0	0	0	0.25809	1	5503	5503		2.3027	0.24298	1	57451	+		24442	10905	16158	16316	33016	33016					-0.015295329000196034
YCAVVGLAN	9	Unmodified	_YCAVVGLAN_					0	0	0			REV__ENST00000507805.5_1_5:94852367-94852451:-|nuORF	REV__ENST00000507805.5_1_5:94852367-94852451:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	455.228571	908.442588	-0.044599	-2.0303E-05	0.087049	3.9627E-05	0.042449	1.9324E-05	455.22846987257924	34.098	0.44957	34.174	34.04	34.489	0.076244	-0.0013896	8.7034E-05	NaN	2.3027	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45132	+		24443	10905	16158	16316							-0.015295329000196034
YCCPFDNF	8	Unmodified	_YCCPFDNF_					0	0	0			REV__ENST00000216225.8_1_22:41368518-41368620:+|nuORF	REV__ENST00000216225.8_1_22:41368518-41368620:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	504.6832275390625	2	504.683139	1007.35172	0.38089	0.00019223	-0.31047	-0.00015669	0.070424	3.5542E-05	504.68294859745606	88.24	0.52076	88.24	88.085	88.605	0					31	19	2	0	0	0	0.54081	1	22003	22003		0.79363	0	1	290590	+		24444	11172	16159	16317	33017	33017					-0.15165744939827164
YCDRLVQDTPF	11	Unmodified	_YCDRLVQDTPF_					0	0	0		ENST00000495641.5_1_9:95858537-95872895:+|nuORF;ENST00000466929.5_1_9:95858543-95872895:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19;nc|ENSG00000165233|Q96LW7|CARD19	ENST00000495641.5_1_9:95858537-95872895:+|nuORF	ENST00000495641.5_1_9:95858537-95872895:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.87005615234375	3	452.879939	1355.61799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.523	1	80.523	80.023	81.023	0								0	0	0	0.34068	1	19623	19623		0.50596	0	1				24445	4069	16160	16318	33018	33018					-0.04559782896467368
YCDSFCLF	8	Unmodified	_YCDSFCLF_					0	0	0			REV__ENST00000265362.8_1_7:83824036-83824144:-|nuORF	REV__ENST00000265362.8_1_7:83824036-83824144:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.193603515625	2	499.193339	996.372125	0.58823	0.00029364	-0.70391	-0.00035139	-0.11568	-5.7749E-05	499.1932193421107	93.399	0.58305	93.399	93.187	93.77	0					47	22	3	0	0	0	0.53771	1	23536	23536		2.8892	2.0956	1	162430	+		24446	11260	16161	16319	33019	33019					-0.12620574279992525
YCDSFCLF	8	Unmodified	_YCDSFCLF_					0	0	0			REV__ENST00000265362.8_1_7:83824036-83824144:-|nuORF	REV__ENST00000265362.8_1_7:83824036-83824144:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	499.193339	996.372125	0.51297	0.00025607	-0.26747	-0.00013352	0.2455	0.00012255	499.1931468370395	93.459	0.73528	93.496	93.178	93.913	0.037369	0.048298	8.6809E-05	NaN	2.8892	42	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161700	+		24447	11260	16161	16319							-0.12620574279992525
YCEEVNGLPT	10	Unmodified	_YCEEVNGLPT_					0	0	0			REV__ENST00000544487.5_1_16:30768821-30771097:-|nuORF	REV__ENST00000544487.5_1_16:30768821-30771097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.7484130859375	2	562.750064	1123.48558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.551	1	27.637	27.137	28.137	0.0867								0	0	0	0.33905	1	3450	3450		1.3295	0.5359	1		+		24448	10799	16162	16320	33020	33020					-0.07122807633254524
YCFEILYKQR	10	Unmodified	_YCFEILYKQR_					0	0	0			REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.9007873535156	3	454.900674	1361.68019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.724	1	21.724	21.224	22.224	0								0	0	0	0.34005	1	1930	1930		0.15932	0	1		+		24449	8111	16163	16321	33021	33021					0.013819882425195829
YCFEILYKQR	10	Unmodified	_YCFEILYKQR_					0	0	0			REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.9007263183594	3	454.900674	1361.68019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.857	1	24.857	24.357	25.357	0								0	0	0	0.34005	1	2807	2807		0.15932	0	1		+		24450	8111	16163	16321	33022	33022					0.013819882425195829
YCFEILYKQR	10	Unmodified	_YCFEILYKQR_					0	0	0			REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9006042480469	3	454.900674	1361.68019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.58	1	21.682	21.182	22.182	0.10178								0	0	0	0.34005	1	1795	1795		0.15932	0	1		+		24451	8111	16163	16321	33023	33023					0.013819882425195829
YCFEILYKQR	10	Unmodified	_YCFEILYKQR_					0	0	0			REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.90069580078125	3	454.900674	1361.68019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.811	1	22.913	22.413	23.413	0.10178								0	0	0	0.34005	1	2123	2123		0.15932	0	1		+		24452	8111	16163	16321	33024	33024					0.013819882425195829
YCFEILYKQR	10	Unmodified	_YCFEILYKQR_					0	0	0			REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9006652832031	3	454.900674	1361.68019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.779	1	23.879	23.379	24.379	0.099739								0	0	0	0.34005	1	2382	2382		0.15932	0	1		+		24453	8111	16163	16321	33025	33025					0.013819882425195829
YCFRQAVM	8	Unmodified	_YCFRQAVM_					0	0	0			REV__ENST00000399231.7_1_15:52603151-52603319:-|nuORF	REV__ENST00000399231.7_1_15:52603151-52603319:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.235595703125	2	509.235873	1016.45719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.21	1	102.25	101.75	102.75	0.042656								0	0	0	0.38822	1	26056	26056		0.79363	0	1		+		24454	11742	16164	16322	33026	33026					-0.050377840235341864
YCFTDGVF	8	Unmodified	_YCFTDGVF_					0	0	0			REV__ENST00000461999.1_1_11:118968563-118968800:-|nuORF	REV__ENST00000461999.1_1_11:118968563-118968800:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.1985778808594	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.163	1	26.254	25.754	26.754	0.091507								0	0	0	0.38822	1	3053	3053		0.79363	0	1		+		24455	10284	16165	16323	33027	33027					-0.09277214545318202
YCGLRGCH	8	Unmodified	_YCGLRGCH_					0	0	0		ENST00000294725.13_1_1:196398773-196398821:-|nuORF	ENST00000294725.13_1_1:196398773-196398821:-|nuORF	ENST00000294725.13_1_1:196398773-196398821:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.8672790527344	2	454.696915	907.379276	-0.11081	-5.0385E-05	-1.6172	-0.00073534	-1.728	-0.00078573	454.6961308503931	24.117	0.27972	24.117	23.941	24.221	0					31	25	2	0	0	0	0.3576	1	2583	2583		0.79363	0	1	14228			24456	5955	16166	16324	33028	33028					-0.07811796888915978
YCGLRGCH	8	Unmodified	_YCGLRGCH_					0	0	0		ENST00000294725.13_1_1:196398773-196398821:-|nuORF	ENST00000294725.13_1_1:196398773-196398821:-|nuORF	ENST00000294725.13_1_1:196398773-196398821:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9006652832031	2	454.696915	907.379276	-0.10245	-4.6586E-05	-1.3611	-0.0006189	-1.4636	-0.00066549	454.6962752422506	23.871	0.22376	23.97	23.856	24.08	0.099739					33	21	2	0	0	0	0.3576	1	2382	2382		0.79363	0	1	12988			24457	5955	16166	16324	33029	33029					-0.07811796888915978
YCHNMQLTLH	10	Unmodified	_YCHNMQLTLH_					0	0	0		nc|ENSG00000290720|Q5EBM4-2|ZNF542P;nc|ENSG00000290720|Q5EBM4|ZNF542P;ENST00000468396.5_1_19:56884531-56888546:+|nuORF;ENST00000467807.5_1_19:56884531-56888546:+|nuORF	nc|ENSG00000290720|Q5EBM4-2|ZNF542P	nc|ENSG00000290720|Q5EBM4-2|ZNF542P	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8226318359375	2	630.286625	1258.5587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.62	1	47.62	47.12	48.12	0								0	0	0	0.33892	1	9594	9594		1.4819	0	1				24458	6650	16167	16325	33030	33030					-0.060239573916305744
YCHRHYRY	8	Unmodified	_YCHRHYRY_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.2733154296875	2	599.272167	1196.52978	-0.063269	-3.7915E-05	1.3167	0.00078908	1.2535	0.00075116	599.2730752775398	33.009	0.4332	33.083	32.914	33.347	0.074322					22	17	2	0	0	0	0.54081	1	5120	5120		0.79363	0.19213	1	29369	+		24459	10790	16168	16326	33031	33031					-0.06062313905749761
YCKGYKTFV	9	Unmodified	_YCKGYKTFV_					0	0	0			REV__nc|ENSG00000108684|Q16515|ASIC2	REV__nc|ENSG00000108684|Q16515|ASIC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7781982421875	2	554.778428	1107.5423	-0.20371	-0.00011301	-0.11055	-6.133E-05	-0.31426	-0.00017434	554.7782646413035	18.34	0.57226	18.34	18.163	18.735	0					195	66	4	0	0	0	0.33849	1	1179	1179		1.6526	0.17072	1	330720	+		24460	8622	16169	16327	33032	33032					-0.007167152860802162
YCKGYKTFV	9	Unmodified	_YCKGYKTFV_					0	0	0			REV__nc|ENSG00000108684|Q16515|ASIC2	REV__nc|ENSG00000108684|Q16515|ASIC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7786254882812	2	554.778428	1107.5423	-0.19607	-0.00010878	0.13252	7.3517E-05	-0.063557	-3.526E-05	554.7784756490171	18.79	0.22452	18.79	18.735	18.959	0					34	25	2	0	0	0	0.33849	1	1211	1211		1.6526	0	1	24969	+		24461	8622	16169	16327	33033	33033					-0.007167152860802162
YCKMYLLQ	8	Unmodified	_YCKMYLLQ_					0	0	0		ENST00000358780.9_2_11:95520836-95522562:-|nuORF;ENST00000545654.5_1_11:95520836-95521746:-|nuORF;ENST00000538316.1_1_11:95520836-95522077:-|nuORF	ENST00000358780.9_2_11:95520836-95522562:-|nuORF	ENST00000358780.9_2_11:95520836-95522562:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.817138671875	2	531.261556	1060.50856	0.69754	0.00037058	-0.22044	-0.00011711	0.47711	0.00025347	531.2611037986361	82.054	0.36376	82.054	81.836	82.2	0					19	12	2	0	0	0	0.35759	1	20108	20108		11.64	1.5664	1	81719			24462	6141	16170	16328	33034	33034					-0.019274600494782135
YCKRDYVRLF	10	Unmodified	_YCKRDYVRLF_					0	0	0		ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	454.9031066894531	3	454.904419	1361.69143	0.01806	8.2154E-06	-2.4067	-0.0010948	-2.3886	-0.0010866	454.90332224510814	58.653	0.48154	58.653	58.473	58.955	0					29	16	2	0	0	0	0.45904	1	12989	12989		3.0723	0.44103	1	137980			24463	3733	16171	16329	33035	33035					0.025048103366543728
YCLFLLNLF	9	Unmodified	_YCLFLLNLF_					0	0	0			REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B	REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3079223632812	2	573.306821	1144.59909	0.28288	0.00016218	-0.34437	-0.00019743	-0.061496	-3.5256E-05	573.3073385312689	102.01	0.11085	102.01	101.98	102.09	0					18	6	4	0	0	0	0.22344	1	26162	26162		15.847	5.7733	1	485510	+		24464	8905	16172	16330	33036	33036					0.03257332270436564
YCQPTCCR	8	Unmodified	_YCQPTCCR_					0	0	0		ENSG00000244537|ENST00000377726|KRTAP4-2	ENSG00000244537|ENST00000377726|KRTAP4-2	ENSG00000244537|ENST00000377726|KRTAP4-2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.18798828125	2	487.188065	972.361578	0.021122	1.029E-05	-0.3822	-0.0001862	-0.36108	-0.00017591	487.18782149142794	53.037	0.39477	53.037	52.898	53.293	0					24	15	2	0	0	0	0.54081	1	11246	11246		0.79363	0	1	82009			24465	5668	16173	16331	33037	33037					-0.12570880206089896
YCQPTCCR	8	Unmodified	_YCQPTCCR_					0	0	0		ENSG00000244537|ENST00000377726|KRTAP4-2	ENSG00000244537|ENST00000377726|KRTAP4-2	ENSG00000244537|ENST00000377726|KRTAP4-2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	487.188065	972.361578	0.18617	9.0699E-05	-0.17309	-8.4327E-05	0.01308	6.3724E-06	487.1879920771555	53.037	0.42619	53.103	52.879	53.306	0.06543	0.032835	0.00013238	NaN	0.79363	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94298			24466	5668	16173	16331							-0.12570880206089896
YCRSHVLS	8	Unmodified	_YCRSHVLS_					0	0	0		ENSG00000176239|ENST00000380219|OR51B6	ENSG00000176239|ENST00000380219|OR51B6	ENSG00000176239|ENST00000380219|OR51B6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7363586425781	2	482.737094	963.459635	0.11245	5.4285E-05	-1.5495	-0.000748	-1.437	-0.00069371	482.736279273041	57.326	0.30654	57.326	57.127	57.434	0					15	10	2	0	0	0	0.3576	1	12575	12575		4.756	0.42677	1	56937			24467	4656	16174	16332	33038	33038					-0.023556122942295588
YCRWIYNF	8	Unmodified	_YCRWIYNF_					0	0	0		nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7677001953125	2	582.768394	1163.52224	0.5384	0.00031376	2.0068	0.0011695	2.5452	0.0014833	582.7693433459294	53.436	1.3665	53.436	53.085	54.451	0					100	52	2	0	0	0	0.52924	1	11444	11444		8.5933	2.8614	1	215440			24468	638	16175	16333	33039	33039					-0.05298466226054188
YCWAAVQQ	8	Unmodified	_YCWAAVQQ_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.71826171875	2	484.71837	967.422187	0.24837	0.00012039	-0.20293	-9.8364E-05	0.045439	2.2025E-05	484.71811974781036	92.127	1.0304	92.127	91.793	92.823	0					52	38	2	0	0	0	0.54081	1	23228	23228		0.79363	0	1	297420			24469	1659	16176	16334	33040	33040					-0.06282703559838865
YCWAAVQQ	8	Unmodified	_YCWAAVQQ_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7183532714844	2	484.71837	967.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.684	1	89.684	89.184	90.184	0								0	0	0	0.38822	1	22405	22405		0.79363	0	1				24470	1659	16176	16334	33041	33041					-0.06282703559838865
YCWMPQMR	8	Unmodified	_YCWMPQMR_					0	0	0			REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7357788085938	2	557.735183	1113.45581	0.26089	0.00014551	1.104	0.00061572	1.3649	0.00076123	557.7358051585508	22.12	0.32083	22.221	22.083	22.404	0.10178					42	24	2	0	0	0	0.54081	1	1963	1963		0.79363	0	1	27199	+		24471	12483	16177	16335	33042	33042					-0.09637741383949106
YCYGIWLTF	9	Unmodified	_YCYGIWLTF_					0	0	0			REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8590698242188	2	583.272978	1164.5314	0.72155	0.00042086	-1.8193	-0.0010612	-1.0978	-0.00064031	583.2719492160461	92.48	0.62225	92.48	92.06	92.682	0					30	23	2	0	0	0	0.2298	1	23279	23279		16.942	4.7016	1	132830	+		24472	13128	16178	16336	33043	33043					-0.044281176603817585
YCYTPTTATW	10	Unmodified	_YCYTPTTATW_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C;REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.29931640625	2	603.760432	1205.50631	0.50043	0.00030214	3.0356	0.0018328	3.5361	0.0021349	604.2641279135188	60.74	0.83542	60.814	60.578	61.414	0.073418					39	28	2	0	0	0	0.31794	1	13582	13582		3.5965	1.019	1	172020	+		24473	10908;9285	16179	16337	33044	33044					-0.08822217253600684
YDADAEETGLD	11	Unmodified	_YDADAEETGLD_					0	0	0		nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24	nc|ENSG00000186638|Q5T7B8-2|KIF24	nc|ENSG00000186638|Q5T7B8-2|KIF24	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.7896118164062	2	599.740948	1197.46734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.447	1	61.52	61.02	62.02	0.073421								0	0	0	0.31731	1	13661	13661		8.7454	0	1				24474	5088	16180	16338	33045	33045					-0.12349271074276658
YDAIFYDL	8	Unmodified	_YDAIFYDL_					0	0	0			REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7489013671875	2	510.239658	1018.46476	0.25422	0.00012971	-0.5825	-0.00029722	-0.32829	-0.00016751	510.2394235556401	51.697	0.64148	51.767	51.503	52.145	0.069878					26	22	2	0	0	0	0.3576	1	10757	10757		8.5933	0	1	43350	+		24475	13273	16181	16339	33046	33046					-0.043730299506364645
YDAPFTPGFL	10	Unmodified	_YDAPFTPGFL_					0	0	0			REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2528686523438	2	564.274032	1126.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.599	1	97.599	97.099	98.099	0								0	0	0	0.33443	1	24815	24815		6.7232	0.36906	1		+		24476	10324	16182	16340	33047	33047					-0.024693656508816275
YDDDIDDE	8	Unmodified	_YDDDIDDE_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.1737060546875	2	500.174909	998.335265	-0.54642	-0.00027331	-1.4802	-0.00074038	-2.0267	-0.0010137	500.17409710480626	41.933	0.58825	41.933	41.745	42.333	0					32	20	2	0	0	0	0.54081	1	7912	7912		0.79363	0	1	144010			24477	1554	16183	16341	33048	33048					-0.1639687609123257
YDDDIDDE	8	Unmodified	_YDDDIDDE_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.1741638183594	2	500.174909	998.335265	-0.34402	-0.00017207	-1.4089	-0.0007047	-1.7529	-0.00087677	500.1740776514613	41.891	0.40099	41.981	41.76	42.161	0.089764					39	15	4	0	0	0	0.54081	1	7771	7771		0.79363	0	1	176910			24478	1554	16183	16341	33049	33049					-0.1639687609123257
YDDFKYIW	8	Unmodified	_YDDFKYIW_					0	0	0		tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7923583984375	2	575.266207	1148.51786	0.44401	0.00025542	0.30755	0.00017692	0.75155	0.00043234	575.2661801330028	77.639	1.2381	77.674	77.417	78.655	0.034485					61	42	2	0	0	0	0.3576	1	18793	18793		6.3541	0.59368	1	203570			24479	13470	16184	16342	33050	33050					-0.050456521679507205
YDDLTSATY	9	Unmodified	_YDDLTSATY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7256469726562	2	524.727112	1047.43967	-0.19645	-0.00010308	-2.7894	-0.0014637	-2.9859	-0.0015668	524.7255316696177	30.388	0.2543	30.464	30.325	30.58	0.075403					18	14	2	0	0	0	0.33704	1	4311	4311		1.8442	0	1	10994			24480	2957	16185	16343	33051	33051					-0.08215129543850708
YDEDLYWYV	9	Unmodified	_YDEDLYWYV_					0	0	0			REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.3695068359375	2	633.271687	1264.52882	0.063051	3.9928E-05	-0.14376	-9.1037E-05	-0.080706	-5.1109E-05	633.2715706498467	90.925	0.52531	90.961	90.729	91.254	0.035446					46	19	4	0	0	0	0.25579	1	22609	22609		4.3292	1.8308	1	309290	+		24481	13063	16186	16344	33052	33052					-0.0928629458433079
YDEEADEE	8	Unmodified	_YDEEADEE_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.173583984375	2	500.174909	998.335265	-0.34402	-0.00017207	-1.4089	-0.0007047	-1.7529	-0.00087677	500.1740776514613	41.891	0.40099	41.981	41.76	42.161	0.089764					39	15	4	0	0	0	0.53817	1	7723	7723		2.5775	0	1	176910	+		24482	10516	16187	16345	33053	33053					-0.16396876091221202
YDEHFPEII	9	Unmodified	_YDEHFPEII_					0	0	0		ENST00000481096.6_1_X:51808851-51809606:-|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7752075195312	2	581.774396	1161.53424	0.92714	0.00053939	-1.0979	-0.00063874	-0.17077	-9.9351E-05	581.7741652277791	67.302	1.654	67.367	67.042	68.696	0.065063					133	59	4	0	0	0	0.29105	1	15588	15588		7.9102	1.7044	1	2469000			24483	3561	16188	16346	33054	33054					-0.04006571001832526
YDELLKIDEE	10	Unmodified	_YDELLKIDEE_					0	0	0			REV__tr|U7SP34|U7SP34_FUSNUCorrinoidadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01712PE=3SV=1	REV__tr|U7SP34|U7SP34_FUSNUCorrinoidadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01712PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.8140869140625	2	633.808633	1265.60271	0.1186	7.5168E-05	-2.5979	-0.0016466	-2.4793	-0.0015714	633.8054166159504	56.63	2.0693	56.63	55.866	57.935	0					225	75	5	0	0	0	0.43214	1	12451	12451		8.1555	1.4324	1	1174500	+		24484	13107	16189	16347	33055	33055					-0.01946371212648046
YDEPDRGL	8	Unmodified	_YDEPDRGL_					0	0	0			REV__ENSG00000103404|ENST00000219689|USP31	REV__ENSG00000103404|ENST00000219689|USP31	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.7232666015625	2	482.722164	963.429775	-0.84616	-0.00040846	-0.19738	-9.5282E-05	-1.0435	-0.00050374	482.7219906513892	41.697	1.2225	41.697	41.459	42.682	0					125	43	5	0	0	0	0.53858	1	8038	8038		2.3027	0.24298	1	1282900	+		24485	8477	16190	16348	33056	33056					-0.053402727585535104
YDETEEEYD	9	Unmodified	_YDETEEEYD_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.3242797851562	2	596.711856	1191.40916	0.23141	0.00013808	-0.50729	-0.00030271	-0.27588	-0.00016462	596.7113430754671	96.102	0.35416	96.102	95.925	96.279	0					64	18	5	0	0	0	0.25845	1	24360	24360		2.0598	0	1	357890	+		24486	9724	16191	16349	33057	33057					-0.17888952719567897
YDFLSRMYA	9	Unmodified	_YDFLSRMYA_					0	0	0			REV__ENSG00000078237|ENST00000179259|TIGAR	REV__ENSG00000078237|ENST00000179259|TIGAR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.7708129882812	2	583.270967	1164.52738	-0.22205	-0.00012952	0.01435	8.3701E-06	-0.2077	-0.00012115	583.7710610342998	13.358	1.041	13.358	12.791	13.832	0					212	137	2	0	0	0	0.35102	3	184	184;202;206		0	0	1	36983	+		24487	8215	16192	16350	33058;33059;33060	33058					-0.04830207154031996
YDFSFVPEFK	10	Unmodified	_YDFSFVPEFK_					0	0	0			REV__ENSG00000157224|ENST00000496677|CLDN12	REV__ENSG00000157224|ENST00000496677|CLDN12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.7863159179688	2	639.805697	1277.59684	0.4145	0.0002652	-0.83781	-0.00053603	-0.42331	-0.00027084	639.8049564720087	70.177	0.65637	70.238	70.013	70.67	0.060562					55	27	3	0	0	0	0.44727	1	16286	16286		5.2969	0.39987	1	223630	+		24488	9775	16193	16351	33061	33061					-0.030854249336698558
YDFTVRFW	8	Unmodified	_YDFTVRFW_					0	0	0		ENSG00000112357|ENST00000318471|PEX7	ENSG00000112357|ENST00000318471|PEX7	ENSG00000112357|ENST00000318471|PEX7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.7279663085938	2	567.274367	1132.53418	0.35208	0.00019973	3.9257	0.0022269	4.2778	0.0024267	567.2761589230296	91.408	0.33284	91.408	91.269	91.602	0					20	12	2	0	0	0	0.35759	1	22957	22957		12.532	2.4576	1	100620			24489	1755	16194	16352	33062	33062					-0.026785262111843622
YDGTSDWGELP	11	Unmodified	_YDGTSDWGELP_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.261962890625	2	620.26185	1238.50915	-0.51082	-0.00031684	0.88255	0.00054741	0.37173	0.00023057	620.2623557417926	40.789	0.58504	40.879	40.626	41.211	0.089642					46	22	3	0	0	0	0.39569	2	7391	7391;7433		5.2969	1.7004	1	125950	+		24490	10130	16195	16353	33063;33064	33063					-0.10056670595076866
YDGTSDWGELP	11	Unmodified	_YDGTSDWGELP_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	620.26185	1238.50915	-0.77201	-0.00047885	0.80276	0.00049792	0.030744	1.9069E-05	620.2621302965636	40.909	0.60159	40.909	40.623	41.225	0	0.015019	-5.1153E-05	NaN	5.2969	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144430	+		24491	10130	16195	16353							-0.10056670595076866
YDIDIVAIY	9	Unmodified	_YDIDIVAIY_					0	0	0		tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.78076171875	2	542.78169	1083.54883	0.74205	0.00040277	-2.5651	-0.0013923	-1.823	-0.00098951	542.7804476408271	85.238	0.65755	85.261	85.035	85.693	0.023125					41	26	3	0	0	0	0.2796	1	20878	20878		9.3474	0.75416	1	243280			24492	13593	16196	16354	33065	33065					0.010395011463060655
YDIEEDKLGI	10	Unmodified	_YDIEEDKLGI_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1;ENST00000469819.5_1_22:38453534-38461185:+|nuORF;ENST00000466374.1_1_22:38453534-38463917:+|nuORF	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7977905273438	2	597.798069	1193.58158	-0.089842	-5.3707E-05	-1.8873	-0.0011282	-1.9771	-0.0011819	597.7966281552892	106.77	0.72027	106.77	106.55	107.27	0					99	69	2	0	0	0	0.40359	1	27510	27510		11.495	1.4208	1	211650			24493	1165	16197	16355	33066	33066					-0.007463365215016893
YDIEEDKLGI	10	Unmodified	_YDIEEDKLGI_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1;ENST00000469819.5_1_22:38453534-38461185:+|nuORF;ENST00000466374.1_1_22:38453534-38463917:+|nuORF	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	597.798069	1193.58158	0.15778	9.4319E-05	-2.2204	-0.0013274	-2.0626	-0.001233	597.7966271351692	106.71	0.37937	106.73	106.57	106.95	0.025711	-0.017239	-0.00023077	NaN	11.495	60	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127730			24494	1165	16197	16355							-0.007463365215016893
YDIFFLYF	8	Unmodified	_YDIFFLYF_					0	0	0		ENST00000263694.8_1_1:31732485-31732845:-|nuORF	ENST00000263694.8_1_1:31732485-31732845:-|nuORF	ENST00000263694.8_1_1:31732485-31732845:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7579345703125	2	564.276044	1126.53753	0.78841	0.00044488	-1.4836	-0.00083717	-0.6952	-0.00039228	564.2749722630907	81.096	0.90265	81.096	80.813	81.716	0					42	30	2	0	0	0	0.35759	1	19873	19873		10.183	0.83596	1	76355			24495	5881	16198	16356	33067	33067					-0.020672761571859155
YDIFLRFM	8	Unmodified	_YDIFLRFM_					0	0	0		ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2394409179688	2	552.78097	1103.54739	0.56223	0.00031079	0.40484	0.00022379	0.96707	0.00053458	552.7808001410743	62.956	0.086502	62.956	62.912	62.999	0					4	2	2	0	0	0	0.35759	1	14256	14256		12.532	3.1841	1	53967			24496	5347	16199	16357	33068	33068					-0.000244114234646986
YDIHWMIR	8	Unmodified	_YDIHWMIR_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2838134765625	2	567.281669	1132.54878	0.30664	0.00017395	3.523	0.0019985	3.8296	0.0021725	567.2845947545667	38.563	0.22984	38.649	38.514	38.744	0.08688					10	7	2	0	0	0	0.53494	1	6748	6748		4.756	0.81161	1	17600	+		24497	10530	16200	16358	33069	33069					-0.012187773347250186
YDINGGKAYL	10	Unmodified	_YDINGGKAYL_					0	0	0			REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2836303710938	2	557.282389	1112.55022	0.62026	0.00034566	-0.3671	-0.00020458	0.25316	0.00014108	557.2821635143218	67.479	0.70966	67.479	67.263	67.973	0					65	27	4	0	0	0	0.30966	1	15726	15726		21.537	3.3906	1	505260	+		24498	13316	16201	16359	33070	33070					-0.001548647649542545
YDIQYNWP	8	Unmodified	_YDIQYNWP_					0	0	0			REV__nc|ENSG00000169679|O43683-2|BUB1	REV__nc|ENSG00000169679|O43683-2|BUB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7478637695312	2	549.748182	1097.48181	0.11423	6.2798E-05	-0.50268	-0.00027635	-0.38845	-0.00021355	549.7478903816556	23.314	0.22847	23.416	23.292	23.521	0.10178					26	21	2	0	0	0	0.54097	1	2265	2265		0.69038	0	1	15982	+		24499	10181	16202	16360	33071	33071					-0.06303109344821678
YDISQLFDF	9	Unmodified	_YDISQLFDF_					0	0	0		ENST00000523006.1_1_7:139219111-139219246:+|nuORF;ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000523006.1_1_7:139219111-139219246:+|nuORF	ENST00000523006.1_1_7:139219111-139219246:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2691650390625	2	574.268947	1146.52334	0.39697	0.00022797	-0.10643	-6.1119E-05	0.29054	0.00016685	574.2686568128314	62.942	1.823	63.014	62.659	64.482	0.072701					149	68	3	0	0	0	0.30397	1	14444	14444		6.2058	0	1	1023300			24500	1212	16203	16361	33072	33072					-0.044059733761287134
YDIYKSVYD	9	Unmodified	_YDIYKSVYD_					0	0	0			REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.2738037109375	2	583.274229	1164.53391	0.62664	0.0003655	-0.88578	-0.00051665	-0.25914	-0.00015115	583.273322556995	63.036	1.1575	63.036	62.575	63.733	0					97	41	3	0	0	0	0.24767	1	14354	14354		13.042	0	1	620730	+		24501	9319	16204	16362	33073	33073					-0.04177990721700553
YDKKKMISKL	10	Unmodified	_YDKKKMISKL_					0	0	0			REV__ENSG00000132854|ENST00000371153|KANK4	REV__ENSG00000132854|ENST00000371153|KANK4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.3670654296875	2	627.367941	1252.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.02	1	102.06	101.56	102.56	0.042656								0	0	0	0.33892	1	25998	25998		1.4819	0	1		+		24502	9131	16205	16363	33074	33074					0.10507749282010082
YDLFEFIAM	9	Unmodified	_YDLFEFIAM_					0	0	0			REV__MAP2K1|p.L313F|1|0.2|ENSG00000169032|chr15:66487271-66487271|G/T|missense_variant	REV__MAP2K1|p.L313F|1|0.2|ENSG00000169032|chr15:66487271-66487271|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2695922851562	2	574.770268	1147.52598	0.43017	0.00024725	0.80002	0.00045983	1.2302	0.00070708	574.7704042916532	63.846	0.34503	63.917	63.829	64.174	0.071018					16	11	2	0	0	0	0.25051	1	14392	14392		7.9102	0	1	104230	+		24503	12727	16206	16364	33075	33075					-0.04187841242833201
YDLGVLDYLS	10	Unmodified	_YDLGVLDYLS_					0	0	0		ENST00000444025.1_1_7:23602816-23603164:-|nuORF	ENST00000444025.1_1_7:23602816-23603164:-|nuORF	ENST00000444025.1_1_7:23602816-23603164:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2923583984375	2	579.289879	1156.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.41	1	94.41	93.91	94.91	0								0	0	0	0.33443	1	23845	23845		6.7232	0.51738	1				24504	6533	16207	16365	33076	33076					-0.0068141768761051935
YDLNRGHYIH	10	Unmodified	_YDLNRGHYIH_					0	0	0			REV__nc|ENSG00000138744|Q02083-3|NAAA	REV__nc|ENSG00000138744|Q02083-3|NAAA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3157348632812	2	644.315086	1286.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.235	1	40.325	39.825	40.825	0.089645								0	0	0	0.33877	1	7238	7238		1.6526	0.17072	1		+		24505	9325	16208	16366	33077	33077					-0.016224505192212746
YDLSQVIYL	9	Unmodified	_YDLSQVIYL_					0	0	0		ENST00000497048.5_1_9:110247318-110247534:-|nuORF	ENST00000497048.5_1_9:110247318-110247534:-|nuORF	ENST00000497048.5_1_9:110247318-110247534:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2822265625	2	557.294965	1112.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.607	1	67.607	67.107	68.107	0								0	0	0	0.2428	1	15681	15681		10.824	0	1				24506	6841	16209	16367	33078	33078					0.02359190037600456
YDPFGQGW	8	Unmodified	_YDPFGQGW_					0	0	0			REV__ENST00000463313.1_1_12:111078308-111085046:+|nuORF	REV__ENST00000463313.1_1_12:111078308-111085046:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.20867919921875	2	485.208692	968.402832	0.015771	7.6525E-06	0.0080905	3.9256E-06	0.023862	1.1578E-05	485.20861997696045	58.041	0.56192	58.109	57.851	58.413	0.068375					53	21	3	0	0	0	0.54199	1	12633	12633		0	0	1	446900	+		24507	10959	16210	16368	33079	33079					-0.08263336579079805
YDPRRDEWQEC	11	Unmodified	_YDPRRDEWQEC_					0	0	0		ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7795104980469	3	499.545619	1495.61503	0.32082	0.00016026	-0.5596	-0.00027955	-0.23878	-0.00011928	499.5452568483985	38.639	0.35455	38.639	38.426	38.781	0					20	12	2	0	0	0	0.31101	1	6878	6878		0.094841	0	1	31717			24508	4667	16211	16369	33080	33080					-0.11295658021231247
YDPRRDEWQEC	11	Unmodified	_YDPRRDEWQEC_					0	0	0		ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	499.545619	1495.61503	0.40072	0.00020018	-0.75487	-0.00037709	-0.35414	-0.00017691	499.5451627792776	38.507	0.21695	38.594	38.435	38.652	0.08688	-0.022872	-0.00022439	NaN	0.094841	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24102			24509	4667	16211	16369							-0.11295658021231247
YDPSTWRGA	9	Unmodified	_YDPSTWRGA_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7434692382812	2	526.743431	1051.47231	0.19795	0.00010427	0.022285	1.1739E-05	0.22024	0.00011601	526.7433745366377	57.996	0.51317	58.065	57.669	58.182	0.068375					47	19	5	0	0	0	0.35102	1	12638	12638		0	0	1	2688100	+		24510	7804	16212	16370	33081	33081					-0.05136877630320669
YDPTAFEKPS	10	Unmodified	_YDPTAFEKPS_					0	0	0			REV__nc|ENSG00000204053|P12525|MYCLP1	REV__nc|ENSG00000204053|P12525|MYCLP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7723999023438	2	577.771854	1153.52915	0.78986	0.00045636	-0.11673	-6.7445E-05	0.67313	0.00038891	577.7716790830681	66.236	0.88213	66.236	65.879	66.761	0					74	33	3	0	0	0	0.42901	1	15349	15349		8.7454	0.58988	1	592830	+		24511	12873	16213	16371	33082	33082					-0.041468748644547304
YDPWWNTT	8	Unmodified	_YDPWWNTT_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7306518554688	2	541.732532	1081.45051	-0.031795	-1.7225E-05	-3.6924	-0.0020003	-3.7242	-0.0020175	542.7310037416182	28.048	0.54341	28.131	27.798	28.341	0.082132					54	31	3	0	0	0	0.53926	1	3613	3613		1.8442	0.19162	1	20815			24512	13495	16214	16372	33083	33083					-0.08695682378925085
YDQQDAQEF	9	Unmodified	_YDQQDAQEF_					0	0	0		nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2722778320312	2	572.233093	1142.45163	0.79706	0.0004561	0.81801	0.00046809	1.6151	0.00092419	572.2334743295763	80.479	0.36032	80.479	80.313	80.674	0					22	12	2	0	0	0	0.24791	1	19612	19612		10.074	2.7847	1	90373			24513	4026	16215	16373	33084	33084					-0.11389512800656121
YDQQDAQEF	9	Unmodified	_YDQQDAQEF_					0	0	0		nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.233093	1142.45163	0.68015	0.00038921	1.3174	0.00075385	1.9975	0.0011431	572.2338959152175	80.533	0.41785	80.557	80.353	80.771	0.023605	0.038999	0.00022801	NaN	14.838	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147890			24514	4026	16215	16373							-0.11389512800656121
YDQYKAIF	8	Unmodified	_YDQYKAIF_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7593994140625	2	524.260925	1046.5073	0.43729	0.00022925	-3.463	-0.0018155	-3.0257	-0.0015863	524.7597875575399	68.778	0.72376	68.778	68.408	69.132	0					76	26	4	0	0	0	0.51415	1	16106	16106		10.824	1.4408	1	230260	+		24515	10096	16216	16374	33085	33085					-0.014096348223802124
YDRFFLSVC	9	Unmodified	_YDRFFLSVC_					0	0	0			REV__ENST00000523277.6_1_8:41399408-41399603:+|nuORF	REV__ENST00000523277.6_1_8:41399408-41399603:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.2743530273438	2	575.273509	1148.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.975	1	63.975	63.475	64.475	0								0	0	0	0.25692	1	14572	14572		7.9102	3.9658	1		+		24516	12305	16217	16375	33086	33086					-0.03585903291445902
YDRHRSSDFSS	11	Unmodified	_YDRHRSSDFSS_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-2|PCNX1	REV__nc|ENSG00000100731|Q96RV3-2|PCNX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.8808898925781	3	452.86909	1355.58544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.843	1	97.884	97.384	98.384	0.040855								0	0	0	0.33897	1	24736	24736		1.1098	0.41209	1		+		24517	8405	16218	16376	33087	33087					-0.07812853975087819
YDRQAIHWMH	10	Unmodified	_YDRQAIHWMH_					0	0	0			REV__nc|ENSG00000114026|O15527-8|OGG1	REV__nc|ENSG00000114026|O15527-8|OGG1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.8703308105469	3	452.880384	1355.61932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.66	1	100.66	100.16	101.16	0								0	0	0	0.33975	1	25748	25748		0.50596	0	1		+		24518	8757	16219	16377	33088	33088					-0.04426104017056787
YDRQSRSSGN	10	Unmodified	_YDRQSRSSGN_					0	0	0		ENST00000382422.6_1_14:35253010-35253052:-|nuORF	ENST00000382422.6_1_14:35253010-35253052:-|nuORF	ENST00000382422.6_1_14:35253010-35253052:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.248291015625	2	585.268333	1168.52211	0.79681	0.00046635	0.33786	0.00019774	1.1347	0.00066409	585.2683333288427	64.659	0.63973	64.728	64.374	65.013	0.068916					39	23	2	0	0	0	0.31443	1	14565	14565		16.149	3.6176	1	119530			24519	6303	16220	16378	33089	33089					-0.05540794692296913
YDSCCVIDKIT	11	Carbamidomethyl (C)	_YDSC(Carbamidomethyl (C))CVIDKIT_	YDSC(0.5)C(0.5)VIDKIT		YDSC(0)C(0)VIDKIT		0	1	0		THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant;ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827|THRA	THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant	THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.5340270996094	3	439.533551	1315.57882	0.46961	0.00020641	0.16079	7.0673E-05	0.6304	0.00027708	439.53359755274613	61.435	2.5981	61.435	61.135	63.733	0					247	108	5	0	0	0	0.043734	1	13793	13793		59.177	59.177	2	6367900			24520	2336	16221	16379	33090	33090	6;7				-0.0663425124234891
YDSCCVIDKIT	11	Carbamidomethyl (C)	_YDSC(Carbamidomethyl (C))CVIDKIT_	YDSC(0.5)C(0.5)VIDKIT		YDSC(0)C(0)VIDKIT		0	1	0		THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant;ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827|THRA	THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant	THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.533935546875	3	439.533551	1315.57882	0.15304	6.7265E-05	0.51292	0.00022544	0.66595	0.00029271	439.5337476952925	61.36	1.9054	61.434	61.11	63.016	0.073418					199	83	4	0	0	0	0.065822	2	13672	13632;13672		53.798	43.477	2	5543100			24521	2336	16221	16379	33091;33092	33092	6;7				-0.0663425124234891
YDSFKNYLIS	10	Unmodified	_YDSFKNYLIS_					0	0	0			REV__ENSG00000168263|ENST00000382082|KCNV2	REV__ENSG00000168263|ENST00000382082|KCNV2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.3074340820312	2	625.308603	1248.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.517	1	61.517	61.017	62.017	0								0	0	0	0.33681	1	13819	13819		3.9444	0	1		+		24522	10148	16222	16380	33093	33093					-0.011703264219931953
YDSIIVFYN	9	Unmodified	_YDSIIVFYN_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.279052734375	2	567.279315	1132.54408	0.23194	0.00013158	0.2819	0.00015992	0.51384	0.00029149	567.2794341542875	115.33	0.64349	115.34	115.14	115.78	0.013092					112	78	2	0	0	0	0.27332	3	29292	29292;29353;29377		10.074	0.6908	1	45452			24523	7363	16223	16381	33094;33095;33096	33094					-0.016893829964601537
YDSIIVFYN	9	Unmodified	_YDSIIVFYN_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2781982421875	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.81	1	105.84	105.34	106.34	0.029739								0	0	0	0.27613	1	27081	27081		3.9444	1.6417	1				24524	7363	16223	16381	33097	33097					-0.016893829964601537
YDSIIVFYN	9	Unmodified	_YDSIIVFYN_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.947265625	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.65	1	113.66	113.16	114.16	0.013817								0	0	0	0.26267	1	28977	28977		6.7232	0.51738	1				24525	7363	16223	16381	33098	33098					-0.016893829964601537
YDSIIVFYN	9	Unmodified	_YDSIIVFYN_					0	0	0		ITM2B-RB1|1|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	567.279315	1132.54408	-0.10789	-6.1204E-05	0.77304	0.00043853	0.66515	0.00037733	567.2797189324137	115.36	0.39962	115.36	115.17	115.57	0	0.012216	0.00027331	NaN	10.074	82	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56794			24526	7363	16223	16381							-0.016893829964601537
YDSNPTQLNYG	11	Unmodified	_YDSNPTQLNYG_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.2785034179688	2	636.280574	1270.5466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.937	1	84.96	84.46	85.46	0.023125								0	0	0	0.33436	1	20806	20806		2.7352	0.89096	1				24527	1103	16224	16382	33099	33099					-0.077855793294475
YDSPREFTGF	10	Unmodified	_YDSPREFTGF_					0	0	0		DYSF|p.G545D|1|0.41|ENSG00000135636|chr2:71551152-71551152|G/A|missense_variant	DYSF|p.G545D|1|0.41|ENSG00000135636|chr2:71551152-71551152|G/A|missense_variant	DYSF|p.G545D|1|0.41|ENSG00000135636|chr2:71551152-71551152|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.7747802734375	2	609.774928	1217.5353	0.55426	0.00033798	-0.38416	-0.00023425	0.1701	0.00010372	609.7745013466462	63.992	0.86891	63.992	63.819	64.688	0					57	30	3	0	0	0	0.44246	1	14563	14563		6.2058	0	1	387040			24528	307	16225	16383	33100	33100					-0.06476356632970237
YDSTYAKPYP	10	Unmodified	_YDSTYAKPYP_					0	0	0		nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2;ENST00000588196.1_1_19:11468409-11470405:+|nuORF;nc|ENSG00000105520|Q96GM1|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2994384765625	2	602.779679	1203.5448	0.51135	0.00030823	-2.1303	-0.0012841	-1.619	-0.00097589	602.7786889863361	62.22	0.42778	62.22	61.993	62.421	0					24	15	2	0	0	0	0.31708	1	14007	14007		7.609	1.8771	1	103910			24529	1476	16226	16384	33101	33101					-0.0488258834741373
YDSTYAKPYP	10	Unmodified	_YDSTYAKPYP_					0	0	0		nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2;ENST00000588196.1_1_19:11468409-11470405:+|nuORF;nc|ENSG00000105520|Q96GM1|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	602.779679	1203.5448	0.50572	0.00030484	-1.5246	-0.00091899	-1.0189	-0.00061415	602.7790189452121	62.018	0.15434	62.092	61.988	62.142	0.073421	-0.06403	0.000493	NaN	7.609	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55151			24530	1476	16226	16384							-0.0488258834741373
YDTAEDEFI	9	Unmodified	_YDTAEDEFI_					0	0	0		tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1	tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1	tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7332153320312	2	551.732394	1101.45024	0.46885	0.00025868	0.83438	0.00046036	1.3032	0.00071903	551.7328489208676	94.608	0.70291	94.608	94.371	95.074	0					68	28	4	0	0	0	0.17247	3	23911	23868;23911;23966		21.747	11.64	1	761050			24531	13665	16227	16385	33102;33103;33104	33103					-0.09643146889402487
YDTAEDEFI	9	Unmodified	_YDTAEDEFI_					0	0	0		tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1	tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1	tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7334594726562	2	551.732394	1101.45024	0.45195	0.00024936	1.0213	0.00056351	1.4733	0.00081287	551.7329794009243	94.567	0.69626	94.605	94.37	95.067	0.038086					73	28	4	0	0	0	0.17247	3	23758	23707;23758;23808		21.747	8.558	1	852840			24532	13665	16227	16385	33105;33106;33107	33106					-0.09643146889402487
YDTLSEQHI	9	Unmodified	_YDTLSEQHI_					0	0	0			REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2627563476562	2	553.261653	1104.50875	0.538	0.00029766	1.7421	0.00096383	2.2801	0.0012615	553.262576166853	96.623	0.50725	96.623	96.38	96.888	0					27	22	2	0	0	0	0.16392	1	24524	24524		22.736	7.898	1	113190	+		24533	9706	16228	16386	33108	33108					-0.03932045524265959
YDTLSEQHI	9	Unmodified	_YDTLSEQHI_					0	0	0			REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2628173828125	2	553.261653	1104.50875	0.62724	0.00034703	1.802	0.00099697	2.4292	0.001344	553.2623677993054	96.646	0.51652	96.685	96.379	96.895	0.039772					40	26	3	0	0	0	0.2125	1	24369	24369		17.113	4.5813	1	113030	+		24534	9706	16228	16386	33109	33109					-0.03932045524265959
YDTLSEQHI	9	Unmodified	_YDTLSEQHI_					0	0	0			REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	553.261653	1104.50875	0.62724	0.00034703	1.802	0.00099697	2.4292	0.001344	553.2623677993054	96.646	0.51652	96.685	96.379	96.895	0.039772	0.031287	4.0463E-05	NaN	22.736	40	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113030	+		24535	9706	16228	16386							-0.03932045524265959
YDTQNILEL	9	Unmodified	_YDTQNILEL_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.2579345703125	2	554.779679	1107.5448	0.78321	0.00043451	-0.95667	-0.00053074	-0.17346	-9.6232E-05	554.7791988041934	47.843	0.37844	47.923	47.756	48.134	0.080032					23	13	3	0	0	0	0.23975	1	9517	9517		14.838	0	1	71951			24536	3916	16229	16387	33110	33110					-0.00466588347421748
YDTQYHAWC	9	Unmodified	_YDTQYHAWC_					0	0	0			REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.7349243164062	2	593.734748	1185.45494	0.2886	0.00017135	0.66519	0.00039495	0.95379	0.0005663	593.734963919608	61.584	1.2701	61.584	61.305	62.575	0					174	59	4	0	0	0	0.32112	1	13797	13797		3.9444	3.9444	1	4867600	+		24537	10112	16230	16388	33111	33111					-0.1303654122766602
YDTQYHAWC	9	Unmodified	_YDTQYHAWC_					0	0	0			REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.3318481445312	2	593.734748	1185.45494	0.2886	0.00017135	0.66519	0.00039495	0.95379	0.0005663	593.734963919608	61.584	1.2701	61.584	61.305	62.575	0					174	59	4	0	0	0	0.25174	1	13877	13877		7.2892	7.2892	1	4867600	+		24538	10112	16230	16388	33112	33112					-0.1303654122766602
YDTQYHAWC	9	Unmodified	_YDTQYHAWC_					0	0	0			REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.735107421875	2	593.734748	1185.45494	0.22278	0.00013227	0.61879	0.0003674	0.84157	0.00049967	593.7349461668515	61.494	1.1005	61.567	61.296	62.396	0.073421					178	55	5	0	0	0	0.25979	3	13664	13628;13664;13761		11.64	11.64	1	4607600	+		24539	10112	16230	16388	33113;33114;33115	33114					-0.1303654122766602
YDTQYHAWC	9	Unmodified	_YDTQYHAWC_					0	0	0			REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2366943359375	2	593.734748	1185.45494	0.22278	0.00013227	0.61879	0.0003674	0.84157	0.00049967	593.7349461668515	61.494	1.1005	61.567	61.296	62.396	0.073421					178	55	5	0	0	0	0.25504	1	13761	13761		4.756	4.756	1	4607600	+		24540	10112	16230	16388	33116	33116					-0.1303654122766602
YDVLVMILI	9	Unmodified	_YDVLVMILI_					0	0	0			REV__ENST00000472204.1_1_7:150771467-150771665:+|nuORF	REV__ENST00000472204.1_1_7:150771467-150771665:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8143920898438	2	539.814479	1077.6144	0.56265	0.00030373	0.11572	6.2468E-05	0.67837	0.00036619	539.814310205059	92.108	1.2426	92.108	91.763	93.006	0					61	46	2	0	0	0	0.25979	1	23365	23365		11.64	3.7301	1	334330	+		24541	10008	16231	16389	33117	33117					0.07870199067633621
YDVSKSSPF	9	Unmodified	_YDVSKSSPF_					0	0	0			REV__ENST00000560936.2_1_15:60688058-60688154:-|nuORF	REV__ENST00000560936.2_1_15:60688058-60688154:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2489624023438	2	515.248015	1028.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.208	1	82.208	81.708	82.708	0								0	0	0	0.22979	1	20135	20135		13.508	2.684	1		+		24542	12482	16232	16390	33118	33118					-0.03162529064638875
YDVWIQYSMI	10	Unmodified	_YDVWIQYSMI_					0	0	0			REV__ENSG00000176102|ENST00000323959|CSTF3	REV__ENSG00000176102|ENST00000323959|CSTF3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.86810302734375	3	439.877647	1316.61111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.918	1	61.991	61.491	62.491	0.073421								0	0	0	0.33451	1	13804	13804		6.6304	0.89852	1		+		24543	10394	16233	16391	33119	33119					-0.03453095777035742
YDWSDRNL	8	Unmodified	_YDWSDRNL_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.7412109375	2	534.740888	1067.46722	0.30573	0.00016349	0.077248	4.1307E-05	0.38298	0.0002048	534.7409957594595	58.087	0.41803	58.087	57.799	58.217	0					39	11	4	0	0	0	0.46914	1	12775	12775		16.942	16.942	1	566190			24544	2050	16234	16392	33120	33120					-0.06381181492952237
YDYDYEQN	8	Unmodified	_YDYDYEQN_					0	0	0			REV__tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	REV__tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2064208984375	2	555.206544	1108.39853	0.10048	5.5789E-05	-0.67179	-0.00037298	-0.57131	-0.0003172	555.2062837877344	33.416	0.29779	33.416	33.303	33.601	0					13	10	2	0	0	0	0.5411	1	5344	5344		0.6015	0	1	19233	+		24545	13184	16235	16393	33121	33121					-0.15132890583322478
YDYDYEQN	8	Unmodified	_YDYDYEQN_					0	0	0			REV__tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	REV__tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2984619140625	2	555.206544	1108.39853	0.10048	5.5789E-05	-0.67179	-0.00037298	-0.57131	-0.0003172	555.2062837877344	33.416	0.29779	33.416	33.303	33.601	0					13	10	2	0	0	0	0.3576	1	5361	5361		0.6015	0	1	19233	+		24546	13184	16235	16393	33122	33122					-0.15132890583322478
YDYGFDAD	8	Unmodified	_YDYGFDAD_					0	0	0			REV__OSGIN2|p.S142Tfs*27|1|0.07|ENSG00000164823|chr8:89921106-89921107|-/ACTATTCT|frameshift_variant	REV__OSGIN2|p.S142Tfs*27|1|0.07|ENSG00000164823|chr8:89921106-89921107|-/ACTATTCT|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.72161865234375	2	483.179798	964.345042	-0.66795	-0.00032274	1.3125	0.00063415	0.64451	0.00031141	483.1803400277758	41.703	0.39381	41.793	41.573	41.967	0.089764					27	15	3	0	0	0	0.3576	1	7649	7649		2.5775	0	1	71450	+		24547	10007	16236	16394	33123	33123					-0.13855643295175923
YDYNDDYDESY	11	Unmodified	_YDYNDDYDESY_					0	0	0			REV__nc|ENSG00000067177|P46020-3|PHKA1	REV__nc|ENSG00000067177|P46020-3|PHKA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.875732421875	3	487.83701	1460.4892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.061	1	22.163	21.663	22.663	0.10178								0	0	0	0.34188	1	1919	1919		0.08335	0.08335	1		+		24548	8118	16237	16395	33124	33124					-0.222625111163552
YDYVIISI	8	Unmodified	_YDYVIISI_					0	0	0			REV__tr|U7T5T5|U7T5T5_FUSNUDNApolymeraseIIIdeltaN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00384PE=4SV=1	REV__tr|U7T5T5|U7T5T5_FUSNUDNApolymeraseIIIdeltaN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00384PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.2641296386719	2	493.265676	984.516799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.745	1	61.745	61.245	62.245	0								0	0	0	0.38182	1	13891	13891		24.674	0	1		+		24549	13307	16238	16396	33125	33125					0.023921334631495483
YEACYILYY	9	Unmodified	_YEACYILYY_					0	0	0			REV__ENSG00000277893|ENST00000622030|SRD5A2	REV__ENSG00000277893|ENST00000622030|SRD5A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.7694702148438	2	600.767726	1199.5209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.312	1	39.401	38.901	39.901	0.088562								0	0	0	0.29233	1	6959	6959		0.6015	0	1		+		24550	11143	16239	16397	33126	33126					-0.0708814510544471
YEAKVSKCF	9	Unmodified	_YEAKVSKCF_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2926025390625	2	537.76806	1073.52157	0.31017	0.0001668	-0.97721	-0.00052551	-0.66704	-0.00035871	537.7677728242774	48.3	1.2413	48.3	47.763	49.004	0					83	42	3	0	0	0	0.15911	1	9877	9877		32.305	19.774	1	132570	+		24551	9769	16240	16398	33127	33127					-0.012253056657300476
YEANYWQF	8	Unmodified	_YEANYWQF_					0	0	0		PRND|p.G88S|1|0.24|ENSG00000171864|chr20:4724813-4724813|G/A|missense_variant;ENSG00000171864|ENST00000305817|PRND	PRND|p.G88S|1|0.24|ENSG00000171864|chr20:4724813-4724813|G/A|missense_variant	PRND|p.G88S|1|0.24|ENSG00000171864|chr20:4724813-4724813|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.27734375	2	560.740357	1119.46616	0.68957	0.00038667	3.1159	0.0017472	3.8055	0.0021339	561.2438693353121	70.627	0.37061	70.687	70.359	70.73	0.060562					19	14	2	0	0	0	0.3576	1	16425	16425		3.9444	0.3479	1	48943			24552	4468	16241	16399	33128	33128					-0.08879395861845296
YECLMMDFF	9	Unmodified	_YECLMMDFF_					0	0	0			REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.7352905273438	2	599.734514	1197.45447	0.31379	0.00018819	1.2295	0.0007374	1.5433	0.0009256	599.7350969424748	91.666	0.47441	91.701	91.464	91.938	0.035446					38	16	4	0	0	0	0.3354	1	22841	22841		2.0598	0.21551	1	234050	+		24553	7896	16242	16400	33129	33129					-0.13635420263381093
YEDAHFSF	8	Unmodified	_YEDAHFSF_					0	0	0			REV__TDRKH|p.E309Q|1|0.28|ENSG00000182134|chr1:151776558-151776558|C/G|missense_variant	REV__TDRKH|p.E309Q|1|0.28|ENSG00000182134|chr1:151776558-151776558|C/G|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.2119445800781	2	508.211432	1014.40831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.865	1	53.93	53.43	54.43	0.06517								0	0	0	0.38822	1	11354	11354		5.7604	2.8712	1		+		24554	10554	16243	16401	33130	33130					-0.09831657787276527
YEDALPILV	9	Unmodified	_YEDALPILV_					0	0	0			REV__ENSG00000134453|ENST00000379888|RBM17	REV__ENSG00000134453|ENST00000379888|RBM17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.7842407226562	2	516.784233	1031.55391	0.34396	0.00017775	-0.12586	-6.5041E-05	0.2181	0.00011271	516.7839768740956	86.068	0.81664	86.068	85.65	86.467	0					48	32	2	0	0	0	0.22344	1	21321	21321		15.847	0	1	134170	+		24555	9178	16244	16402	33131	33131					0.039398050088948366
YEDALPILV	9	Unmodified	_YEDALPILV_					0	0	0			REV__ENSG00000134453|ENST00000379888|RBM17	REV__ENSG00000134453|ENST00000379888|RBM17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.7845458984375	2	516.784233	1031.55391	0.46642	0.00024104	0.12056	6.2302E-05	0.58697	0.00030334	516.7840408689257	85.947	0.81071	85.972	85.599	86.41	0.025169					46	28	2	0	0	0	0.23598	1	21154	21154		15.847	4.2069	1	116010	+		24556	9178	16244	16402	33132	33132					0.039398050088948366
YEDALPILV	9	Unmodified	_YEDALPILV_					0	0	0			REV__ENSG00000134453|ENST00000379888|RBM17	REV__ENSG00000134453|ENST00000379888|RBM17	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	516.784233	1031.55391	0.34396	0.00017775	-0.12586	-6.5041E-05	0.2181	0.00011271	516.7839768740956	86.068	0.81664	86.068	85.65	86.467	0	0.048112	-9.8613E-05	NaN	15.847	48	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134170	+		24557	9178	16244	16402							0.039398050088948366
YEDIEALIG	9	Unmodified	_YEDIEALIG_					0	0	0		ENST00000565891.1_1_16:89622463-89623498:+|nuORF;ENST00000569720.1_1_16:89620122-89623498:+|nuORF;ENST00000561911.5_1_16:89619423-89623498:+|nuORF;ENSG00000197912|ENST00000645818|SPG7	ENST00000565891.1_1_16:89622463-89623498:+|nuORF	ENST00000565891.1_1_16:89622463-89623498:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7554626464844	2	511.755672	1021.49679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.307	1	16.385	15.885	16.885	0.077806								0	0	0	0.29525	1	640	640		0	0	1				24558	5329	16245	16403	33133	33133					-0.013096622674538594
YEEFITAGTF	10	Unmodified	_YEEFITAGTF_					0	0	0			REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF	REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2984619140625	2	589.274229	1176.53391	0.70952	0.0004181	0.23912	0.00014091	0.94864	0.00055901	589.2742237868001	67.949	1.1018	68.012	67.845	68.946	0.063507					95	41	4	0	0	0	0.17902	1	15709	15709		36.127	3.3413	1	1943900	+		24559	8808	16246	16404	33134	33134					-0.04729990721739341
YEELNAFFH	9	Unmodified	_YEELNAFFH_					0	0	0		ENSG00000171532|ENST00000302584|NEUROD2	ENSG00000171532|ENST00000302584|NEUROD2	ENSG00000171532|ENST00000302584|NEUROD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2799072265625	2	585.266739	1168.51892	0.25549	0.00014953	-0.25841	-0.00015124	-0.0029221	-1.7102E-06	585.266654360902	29.717	0.3145	29.792	29.673	29.987	0.075403					29	18	2	0	0	0	0.34646	1	4134	4134		0.6015	0	1	24357			24560	4444	16247	16405	33135	33135					-0.05859437799040279
YEEVMILRR	9	Unmodified	_YEEVMILRR_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.2670288085938	2	604.82644	1207.63833	-0.086845	-5.2526E-05	-0.57938	-0.00035042	-0.66622	-0.00040295	604.8258623530894	40.784	0.50945	40.784	40.593	41.103	0					21	17	2	0	0	0	0.25579	1	7597	7597		4.3292	0	1	53502			24561	1073	16248	16406	33136	33136					0.04281432554012099
YEFLDTNYF	9	Unmodified	_YEFLDTNYF_					0	0	0			REV__nc|ENSG00000159164|Q7L0J3-2|SV2A	REV__nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3698120117188	2	606.266404	1210.51826	0.74326	0.00045061	0.69819	0.00042329	1.4414	0.0008739	606.2664966901787	88.414	0.41556	88.414	88.232	88.648	0					22	15	2	0	0	0	0.25376	1	22002	22002		6.2058	0.97511	1	149140	+		24562	9820	16249	16407	33137	33137					-0.0785827723877901
YEFQKPSL	8	Unmodified	_YEFQKPSL_					0	0	0		nc|ENSG00000184716|A6NH21-2|SERINC4;ENST00000448553.5_1_15:44087200-44089477:-|nuORF;nc|ENSG00000184716|A6NH21|SERINC4	nc|ENSG00000184716|A6NH21-2|SERINC4	nc|ENSG00000184716|A6NH21-2|SERINC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2588195800781	2	506.260925	1010.5073	0.74159	0.00037544	-0.0090235	-4.5682E-06	0.73257	0.00037087	506.26084875308413	80.567	0.8279	80.567	80.228	81.056	0					44	28	2	0	0	0	0.53118	1	19688	19688		7.2892	0.56607	1	149880			24563	6556	16250	16408	33138	33138					0.0024636517761109644
YEGGCYLF	8	Unmodified	_YEGGCYLF_					0	0	0		ENST00000526562.5_1_11:8704757-8706293:+|nuORF	ENST00000526562.5_1_11:8704757-8706293:+|nuORF	ENST00000526562.5_1_11:8704757-8706293:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	476.19891357421875	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.647	1	35.647	35.147	36.147	0								0	0	0	0.38822	1	5981	5981		2.8892	0	1				24564	6991	16251	16409	33139	33139					-0.09277214545318202
YEGGFFLFVF	10	Unmodified	_YEGGFFLFVF_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.7533569335938	2	613.30005	1224.58555	-0.21922	-0.00013445	4.3956	0.0026958	4.1764	0.0025614	613.3046637914664	73.293	0.711	73.293	72.631	73.342	0					31	24	2	0	0	0	0.31616	1	17321	17321		10.074	1.4806	1	247130			24565	3719	16252	16410	33140	33140					-0.017762022371471176
YEGIRPTIKF	10	Unmodified	_YEGIRPTIKF_					0	0	0			REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.7535400390625	2	612.342781	1222.67101	0.060864	3.727E-05	-0.049424	-3.0265E-05	0.01144	7.0053E-06	612.8443102602736	73.2	0.31492	73.252	72.951	73.266	0.052574					13	10	2	0	0	0	0.31565	1	17152	17152		12.241	0.06591	1	121190	+		24566	13259	16253	16411	33141	33141					0.06857962948492968
YEIITSILKAS	11	Unmodified	_YEIITSILKAS_					0	0	0			REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	413.2398681640625	3	413.239461	1236.69655	0.57694	0.00023842	0.47634	0.00019684	1.0533	0.00043526	413.23964831562483	60.954	0.72737	60.954	60.749	61.477	0					92	25	4	0	0	0	0.3217	3	13632	13627;13632;13676		15.538	6.2947	1	2185500	+		24567	13193	16254	16412	33142;33143;33144	33143					0.08767392680283592
YEIITSILKAS	11	Unmodified	_YEIITSILKAS_					0	0	0			REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	413.57427978515625	3	413.239461	1236.69655	0.57694	0.00023842	0.47634	0.00019684	1.0533	0.00043526	413.23964831562483	60.954	0.72737	60.954	60.749	61.477	0					92	25	4	0	0	0	0.31065	1	13627	13627		5.8681	5.8681	1	2185500	+		24568	13193	16254	16412	33145	33145					0.08767392680283592
YEILNPMHIF	10	Unmodified	_YEILNPMHIF_					0	0	0			REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.8009643554688	2	638.823366	1275.63218	0.249	0.00015907	-3.0288	-0.0019349	-2.7798	-0.0017758	638.8213104213221	88.832	0.46815	88.864	88.729	89.198	0.032265					33	18	2	0	0	0	0.45627	1	22050	22050		3.5965	0.31518	1	98773	+		24569	7733	16255	16413	33146	33146					0.005389143224874715
YEKIIVFWSS	10	Unmodified	_YEKIIVFWSS_					0	0	0			REV__tr|U7SXC3|U7SXC3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00975PE=4SV=1	REV__tr|U7SXC3|U7SXC3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00975PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.3383178710938	2	636.337164	1270.65977	0.18138	0.00011542	0.20432	0.00013002	0.38571	0.00024544	636.3372067771978	102.2	0.3933	102.2	102.01	102.4	0					45	27	2	0	0	0	0.43503	1	26195	26195		7.609	0.50723	1	97464	+		24570	13224	16256	16414	33147	33147					0.03527140854384925
YEKIIVFWSS	10	Unmodified	_YEKIIVFWSS_					0	0	0			REV__tr|U7SXC3|U7SXC3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00975PE=4SV=1	REV__tr|U7SXC3|U7SXC3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00975PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.3375854492188	2	636.337164	1270.65977	0.38575	0.00024547	0.033178	2.1112E-05	0.41893	0.00026658	636.8386263538466	102.17	0.35971	102.21	102.02	102.38	0.042656					38	28	2	0	0	0	0.43214	1	26030	26030		8.1555	1.0538	1	99037	+		24571	13224	16256	16414	33148	33148					0.03527140854384925
YEKNFIESF	9	Unmodified	_YEKNFIESF_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7653198242188	2	588.782222	1175.54989	0.93548	0.0005508	-0.5698	-0.00033549	0.36568	0.00021531	588.7818957588121	81.605	0.63371	81.605	81.374	82.008	0					35	21	2	0	0	0	0.27929	1	20064	20064		9.3831	0	1	440670	+		24572	7955	16257	16415	33149	33149					-0.03086284484834323
YEKNKNYF	8	Unmodified	_YEKNKNYF_					0	0	0		nc|ENSG00000100678|P57103-7|SLC8A3	nc|ENSG00000100678|P57103-7|SLC8A3	nc|ENSG00000100678|P57103-7|SLC8A3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2692260742188	2	553.269281	1104.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.466	1	38.466	37.966	38.966	0								0	0	0	0.38822	1	6830	6830		2.0598	0.21551	1				24573	7470	16258	16416	33150	33150					-0.024071339364581945
YEKPNKISKC	10	Unmodified	_YEKPNKISKC_					0	0	0		ENSG00000083817|ENST00000196489|ZNF416	ENSG00000083817|ENST00000196489|ZNF416	ENSG00000083817|ENST00000196489|ZNF416	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.3181762695312	2	605.318448	1208.62234	0.091928	5.5646E-05	-0.61093	-0.00036981	-0.519	-0.00031416	605.3180937065082	44.604	0.81847	44.604	44.387	45.205	0					67	29	4	0	0	0	0.45627	1	8749	8749		3.5965	0	1	300850			24574	936	16259	16417	33151	33151					0.02637726317107081
YELGVLFLL	9	Unmodified	_YELGVLFLL_					0	0	0		TDP1|p.P545L|1|0.33|ENSG00000042088|chr14:90019408-90019408|C/T|missense_variant	TDP1|p.P545L|1|0.33|ENSG00000042088|chr14:90019408-90019408|C/T|missense_variant	TDP1|p.P545L|1|0.33|ENSG00000042088|chr14:90019408-90019408|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.812744140625	2	533.812793	1065.61103	0.75844	0.00040486	-0.53077	-0.00028333	0.22767	0.00012153	534.3140951332779	97.865	0.17638	97.906	97.781	97.957	0.040855					14	7	3	0	0	0	0.22344	1	24748	24748		15.847	0	1	89904			24575	13429	16260	16418	33152	33152					0.08085272285279643
YELLAMFV	8	Unmodified	_YELLAMFV_					0	0	0			REV__nc|ENSG00000145864|P47870-4|GABRB2	REV__nc|ENSG00000145864|P47870-4|GABRB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	493.25628662109375	2	493.256797	984.499041	-0.0064345	-3.1739E-06	-0.3401	-0.00016776	-0.34654	-0.00017093	493.25660090073853	25.529	0.37951	25.62	25.444	25.824	0.091507					45	30	2	0	0	0	0.54081	1	2861	2861		0.79363	0	1	32642	+		24576	9527	16261	16419	33153	33153					0.006170949366378409
YELLGNPVL	9	Unmodified	_YELLGNPVL_					0	0	0		nc|ENSG00000165124|Q4LDE5-3|SVEP1;SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant;SVEP1|p.A3133Qfs*12|1|0.3|ENSG00000165124|chr9:110406203-110406203|C/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1	nc|ENSG00000165124|Q4LDE5-3|SVEP1	nc|ENSG00000165124|Q4LDE5-3|SVEP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.28448486328125	2	509.2844	1016.55425	0.327	0.00016654	-0.028937	-1.4737E-05	0.29807	0.0001518	509.2842746571201	76.183	0.9579	76.183	75.937	76.895	0					119	46	3	0	0	0	0.12809	1	18379	18379		26.884	0	1	3436600			24577	4059	16262	16420	33154	33154					0.04663224728756177
YELLSLFVF	9	Unmodified	_YELLSLFVF_					0	0	0			REV__ENSG00000268089|ENST00000598523|GABRQ	REV__ENSG00000268089|ENST00000598523|GABRQ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.29736328125	2	565.810251	1129.60595	0.415	0.00023481	0.075069	4.2475E-05	0.49007	0.00027729	565.8102782664317	93.535	0.49105	93.573	93.359	93.85	0.037369					49	18	4	0	0	0	0.2796	1	23500	23500		9.3474	4.1168	1	372790	+		24578	11122	16263	16421	33155	33155					0.04632968422652084
YELPKMITR	9	Unmodified	_YELPKMITR_					0	0	0			REV__ENST00000497878.5_1_19:2988043-2994999:+|nuORF	REV__ENST00000497878.5_1_19:2988043-2994999:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.270263671875	2	575.818084	1149.62162	0.16525	9.5152E-05	-2.8839	-0.0016606	-2.7187	-0.0015655	575.8164517326529	51.126	0.3469	51.126	50.922	51.269	0					16	11	2	0	0	0	0.25174	1	10668	10668		7.2892	0	1	42437	+		24579	8521	16264	16422	33156	33156					0.05278931668044606
YELRTYKL	8	Unmodified	_YELRTYKL_					0	0	0		ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2849731445312	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.015	1	59.086	58.586	59.586	0.070477								0	0	0	0.38822	1	12922	12922		8.5933	0	1				24580	4958	16265	16423	33157	33157					0.05278315994382865
YELSLIGKVF	10	Unmodified	_YELSLIGKVF_					0	0	0			REV__ATG4C|p.A334Sfs*7|1|0.07|ENSG00000125703|chr1:62834103-62834104|-/AGTA|frameshift_variant	REV__ATG4C|p.A334Sfs*7|1|0.07|ENSG00000125703|chr1:62834103-62834104|-/AGTA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.8111572265625	2	584.834257	1167.65396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.368	1	54.433	53.933	54.933	0.065128								0	0	0	0.33738	1	11506	11506		3.2813	0	1		+		24581	7724	16266	16424	33158	33158					0.07684042342725661
YELSYTMIP	9	Unmodified	_YELSYTMIP_					0	0	0			REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7671508789062	2	558.767726	1115.5209	-0.12639	-7.0625E-05	-0.26686	-0.00014911	-0.39325	-0.00021974	558.7674333358775	23.869	0.33214	23.869	23.758	24.09	0					48	28	2	0	0	0	0.34704	1	2520	2520		0.52476	0	1	26954	+		24582	13251	16267	16425	33159	33159					-0.032241451054687786
YENQYMNKI	9	Unmodified	_YENQYMNKI_					0	0	0		tr|U7SV09|U7SV09_FUSNUAdenosylcobinamidekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01082PE=3SV=1	tr|U7SV09|U7SV09_FUSNUAdenosylcobinamidekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01082PE=3SV=1	tr|U7SV09|U7SV09_FUSNUAdenosylcobinamidekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01082PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.7789306640625	2	601.779156	1201.54376	0.19206	0.00011558	0.10238	6.1612E-05	0.29444	0.00017719	601.7791812769971	45.692	0.9509	45.778	45.475	46.426	0.085621					62	35	2	0	0	0	0.29576	1	8968	8968		7.2892	0	1	97054			24583	13617	16268	16426	33160	33160					-0.048951259879686404
YEPGLARDPNI	11	Unmodified	_YEPGLARDPNI_					0	0	0			REV__ENSG00000143006|ENST00000371445|DMRTB1	REV__ENSG00000143006|ENST00000371445|DMRTB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.220458984375	3	415.547177	1243.6197	-0.026821	-1.1146E-05	4.4858	0.0018641	4.459	0.0018529	415.5486383468582	48.731	0.26836	48.808	48.661	48.93	0.076607					12	8	2	0	0	0	0.31021	1	9762	9762		9.7643	3.5299	1	45877	+		24584	9448	16269	16427	33161	33161					0.007635941838316285
YEPLDHRLR	9	Unmodified	_YEPLDHRLR_					0	0	0			REV__ENSG00000265817|ENST00000481490|FSBP	REV__ENSG00000265817|ENST00000481490|FSBP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8191528320312	2	599.820004	1197.62546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.104	1	62.104	61.604	62.604	0								0	0	0	0.28527	1	14001	14001		2.0598	0	1		+		24585	11119	16270	16428	33162	33162					0.03454737486117665
YEQDQKYSF	9	Unmodified	_YEQDQKYSF_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.266357421875	2	604.266936	1206.51932	0.0085378	5.1591E-06	0.38146	0.0002305	0.39	0.00023566	604.2670954614626	40.368	0.35015	40.368	40.18	40.53	0					27	12	3	0	0	0	0.14539	1	7404	7404		24.882	17.78	1	59461			24586	1902	16271	16429	33163	33163					-0.07568062869881942
YEQDQKYSF	9	Unmodified	_YEQDQKYSF_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2673950195312	2	604.266936	1206.51932	0.21093	0.00012746	0.60534	0.00036578	0.81627	0.00049325	604.2669019371403	40.265	0.38029	40.355	40.189	40.569	0.089642					28	14	3	0	0	0	0.26104	1	7236	7236		11.495	7.3052	1	62468			24587	1902	16271	16429	33164	33164					-0.07568062869881942
YEQGDHLF	8	Unmodified	_YEQGDHLF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.22686767578125	2	504.724707	1007.43486	0.32622	0.00016465	1.4673	0.00074059	1.7935	0.00090525	504.72547502292446	75.513	0.26309	75.513	75.268	75.532	0					18	9	2	0	0	0	0.52502	1	18083	18083		9.3474	1.4373	1	101220	+		24588	9733;12819	16272	16430	33165	33165					-0.06855968895945352
YEQKQYEL	8	Unmodified	_YEQKQYEL_					0	0	0			REV__ENST00000376525.5_1_9:82187705-82189917:+|nuORF	REV__ENST00000376525.5_1_9:82187705-82189917:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7667236328125	2	550.766571	1099.51859	0.30464	0.00016779	-0.46427	-0.00025571	-0.15963	-8.792E-05	550.7664349591886	90.118	0.94753	90.118	89.86	90.808	0					84	37	3	0	0	0	0.46914	1	22554	22554		16.942	3.4344	1	2719000	+		24589	11643	16273	16431	33166	33166					-0.027188575189029507
YEQKQYEL	8	Unmodified	_YEQKQYEL_					0	0	0			REV__ENST00000376525.5_1_9:82187705-82189917:+|nuORF	REV__ENST00000376525.5_1_9:82187705-82189917:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.766357421875	2	550.766571	1099.51859	0.21098	0.0001162	-0.19314	-0.00010638	0.017837	9.8243E-06	550.7664806998564	90.006	1.0343	90.04	89.822	90.856	0.034065					84	42	3	0	0	0	0.46914	1	22368	22368		16.942	3.4344	1	2501400	+		24590	11643	16273	16431	33167	33167					-0.027188575189029507
YEQKQYEL	8	Unmodified	_YEQKQYEL_					0	0	0			REV__ENST00000376525.5_1_9:82187705-82189917:+|nuORF	REV__ENST00000376525.5_1_9:82187705-82189917:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	550.766571	1099.51859	0.30464	0.00016779	-0.46427	-0.00025571	-0.15963	-8.792E-05	550.7664349591886	90.118	0.94753	90.118	89.86	90.808	0	0.039051	-0.00017227	NaN	16.942	84	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2719000	+		24591	11643	16273	16431							-0.027188575189029507
YEQLVLHP	8	Unmodified	_YEQLVLHP_					0	0	0		ENSG00000169902|ENST00000304842|TPST1;ENSG00000128294|ENST00000338754|TPST2	ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2615661621094	2	499.768917	997.523281	0.21597	0.00010794	-3.1796	-0.0015891	-2.9636	-0.0014811	499.7671867905215	50.773	0.35698	50.773	50.624	50.981	0					17	11	2	0	0	0	0.3576	1	10509	10509		8.5933	0.68312	1	70374			24592	4363	16274	16432	33168	33168					0.02442071414509428
YEQLVLHP	8	Unmodified	_YEQLVLHP_					0	0	0		ENSG00000169902|ENST00000304842|TPST1;ENSG00000128294|ENST00000338754|TPST2	ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	499.768917	997.523281	0.31513	0.00015749	-3.4417	-0.0017201	-3.1266	-0.0015626	499.7669225017317	50.793	0.35688	50.862	50.603	50.96	0.069874	0.044645	-0.00011404	NaN	8.5933	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70784			24593	4363	16274	16432							0.02442071414509428
YEQSALVVSSQ	11	Unmodified	_YEQSALVVSSQ_					0	0	0			REV__ENSG00000176715|ENST00000614302|ACSF3	REV__ENSG00000176715|ENST00000614302|ACSF3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.792724609375	2	605.801143	1209.58773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.933	1	69.933	69.433	70.433	0								0	0	0	0.14402	1	16385	16385		41.956	15.072	1		+		24594	10411	16275	16433	33169	33169					-0.008678182899757303
YEQSALVVSSQ	11	Unmodified	_YEQSALVVSSQ_					0	0	0			REV__ENSG00000176715|ENST00000614302|ACSF3	REV__ENSG00000176715|ENST00000614302|ACSF3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7926025390625	2	605.801143	1209.58773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.041	1	70.102	69.602	70.602	0.060562								0	0	0	0.22707	1	16265	16265		23.79	7.9426	1		+		24595	10411	16275	16433	33170	33170					-0.008678182899757303
YERDIYIE	8	Unmodified	_YERDIYIE_					0	0	0			REV__tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	REV__tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7666015625	2	550.766571	1099.51859	0.30464	0.00016779	-0.46427	-0.00025571	-0.15963	-8.792E-05	550.7664349591886	90.118	0.94753	90.118	89.86	90.808	0					84	37	3	0	0	0	0.52924	1	22508	22508		8.5933	0	1	2719000	+		24596	13110	16276	16434	33171	33171					-0.027188575189029507
YERDIYIE	8	Unmodified	_YERDIYIE_					0	0	0			REV__tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	REV__tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7661743164062	2	550.766571	1099.51859	0.21098	0.0001162	-0.19314	-0.00010638	0.017837	9.8243E-06	550.7664806998564	90.006	1.0343	90.04	89.822	90.856	0.034065					84	42	3	0	0	0	0.52924	1	22416	22416		8.5933	0	1	2501400	+		24597	13110	16276	16434	33172	33172					-0.027188575189029507
YERKIIIK	8	Unmodified	_YERKIIIK_					0	0	0			REV__ENST00000467530.5_1_1:85959978-85960173:-|nuORF	REV__ENST00000467530.5_1_1:85959978-85960173:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.8348388671875	2	531.837134	1061.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.5	1	101.5	101	102	0								0	0	0	0.38822	1	26001	26001		0.79363	0	1		+		24598	12008	16277	16435	33173	33173					0.1313518564502374
YERPYSRYD	9	Unmodified	_YERPYSRYD_					0	0	0			REV__nc|ENSG00000182872|P98175-4|RBM10	REV__nc|ENSG00000182872|P98175-4|RBM10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8606262207031	3	416.859643	1247.5571	-0.23047	-9.6075E-05	2.5947	0.0010816	2.3642	0.00098556	416.8606688315533	32.459	0.23466	32.533	32.421	32.656	0.07378					23	13	2	0	0	0	0.34646	1	4895	4895		0.26902	0.033176	1	25784	+		24599	10580	16278	16436	33174	33174					-0.05677551884377863
YESDIPEEL	9	Unmodified	_YESDIPEEL_					0	0	0		ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;nc|ENSG00000144535|Q8IYB7-5|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;DIS3L2|p.P613Afs*8|1|0.2|ENSG00000144535|chr2:232329902-232329903|-/C|frameshift_variant;ENSG00000144535|ENST00000325385|DIS3L2	ENST00000464554.5_1_2:232880330-232952439:+|nuORF	ENST00000464554.5_1_2:232880330-232952439:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.7627563476562	2	547.748044	1093.48154	0.3326	0.00018218	0.27735	0.00015192	0.60995	0.0003341	547.7480078104676	56.537	1.0579	56.603	56.234	57.292	0.066448					54	38	2	0	0	0	0.12809	1	12175	12175		26.884	1.4843	1	103830			24600	280	16279	16437	33175	33175					-0.06146573855335191
YESEYYLTF	9	Unmodified	_YESEYYLTF_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.7671508789062	2	607.766237	1213.51792	0.68485	0.00041623	0.61455	0.00037351	1.2994	0.00078973	607.7665905031882	63.398	0.72705	63.398	63.142	63.87	0					55	25	3	0	0	0	0.21398	1	14372	14372		16.942	3.8998	1	518160			24601	13545	16280	16438	33176	33176					-0.080296969586243
YESMFFLL	8	Unmodified	_YESMFFLL_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.8052978515625	2	525.254254	1048.49396	0.098717	5.1852E-05	-0.82232	-0.00043193	-0.7236	-0.00038008	525.253727423323	58.267	0.34916	58.338	58.184	58.533	0.070477					23	12	2	0	0	0	0.35759	1	12718	12718		10.183	0.83596	1	60812	+		24602	10014	16281	16439	33177	33177					-0.02835208925966981
YETASWII	8	Unmodified	_YETASWII_					0	0	0		nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7475891113281	2	491.74765	981.480748	0.4564	0.00022443	-0.063788	-3.1368E-05	0.39261	0.00019307	491.74749842771513	78.244	0.59354	78.274	77.995	78.589	0.030159					39	20	3	0	0	0	0.52502	1	18748	18748		9.3474	0	1	208180			24603	3573	16282	16440	33178	33178					-0.010733237137174001
YETIGLQQLE	10	Unmodified	_YETIGLQQLE_					0	0	0			REV__SLITRK6|p.N818Kfs*2|1|0.07|ENSG00000184564|chr13:85794055-85794056|-/T|frameshift_variant	REV__SLITRK6|p.N818Kfs*2|1|0.07|ENSG00000184564|chr13:85794055-85794056|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3065795898438	2	597.306061	1192.59757	0.31959	0.00019089	-0.36792	-0.00021976	-0.048339	-2.8873E-05	597.3058375089454	47.132	0.61678	47.132	46.967	47.583	0					46	20	3	0	0	0	0.46827	1	9541	9541		1.3295	0.25807	1	351840	+		24604	10638	16283	16441	33179	33179					0.008973697154033289
YEVEEPNEYYC	11	Unmodified	_YEVEEPNEYYC_					0	0	0		ENSG00000135077|ENST00000307851|HAVCR2	ENSG00000135077|ENST00000307851|HAVCR2	ENSG00000135077|ENST00000307851|HAVCR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	479.8553771972656	3	479.855347	1436.54421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.593	1	21.694	21.194	22.194	0.10178								0	0	0	0.34212	1	1798	1798		0	0	1				24605	2710	16284	16442	33180	33180					-0.15659795849433067
YEVEKIILF	9	Unmodified	_YEVEKIILF_					0	0	0			REV__ENST00000501499.1_1_12:98880649-98880853:-|nuORF	REV__ENST00000501499.1_1_12:98880649-98880853:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.328857421875	2	577.328808	1152.64306	0.35564	0.00020532	-0.14829	-8.5615E-05	0.20734	0.00011971	577.3286875604565	106.07	0.4257	106.1	105.96	106.39	0.029739					77	48	3	0	0	0	0.15282	1	27152	27152		24.021	0	1	233980	+		24606	12199	16285	16443	33181	33181					0.07284639968429474
YEVFKNKNF	9	Unmodified	_YEVFKNKNF_					0	0	0			REV__nc|ENSG00000134899|P28715-2|ERCC5	REV__nc|ENSG00000134899|P28715-2|ERCC5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.7918701171875	2	594.806031	1187.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.214	1	46.214	45.714	46.714	0								0	0	0	0.27613	1	9170	9170		3.9444	0.66309	1		+		24607	9191	16286	16444	33182	33182					0.011214145060421288
YEVKSSPHCP	10	Unmodified	_YEVKSSPHCP_					0	0	0		ENST00000578923.1_1_11:119252535-119369366:+|nuORF	ENST00000578923.1_1_11:119252535-119369366:+|nuORF	ENST00000578923.1_1_11:119252535-119369366:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7652587890625	2	573.766049	1145.51754	0.41054	0.00023555	-2.4171	-0.0013868	-2.0065	-0.0011513	573.7642625793808	55.565	0.44421	55.63	55.314	55.758	0.065128					29	16	2	0	0	0	0.31773	1	11815	11815		4.897	0.95262	1	79802			24608	7212	16287	16445	33183	33183					-0.04939395159453852
YEVKSSPHCP	10	Unmodified	_YEVKSSPHCP_					0	0	0		ENST00000578923.1_1_11:119252535-119369366:+|nuORF	ENST00000578923.1_1_11:119252535-119369366:+|nuORF	ENST00000578923.1_1_11:119252535-119369366:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7652587890625	2	573.766049	1145.51754	0.4987	0.00028614	1.1534	0.00066178	1.6521	0.00094792	574.7716386419185	55.207	0.42316	55.272	55.068	55.491	0.065128					29	15	3	0	0	0	0.31773	1	11815	11815		4.897	0.95262	1	52772			24609	7212	16287	16445	33184	33184					-0.04939395159453852
YEVKSSPHCP	10	Unmodified	_YEVKSSPHCP_					0	0	0		ENST00000578923.1_1_11:119252535-119369366:+|nuORF	ENST00000578923.1_1_11:119252535-119369366:+|nuORF	ENST00000578923.1_1_11:119252535-119369366:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	573.766049	1145.51754	0.4421	0.00025366	-2.7695	-0.001589	-2.3274	-0.0013354	573.7646211491368	55.663	0.40028	55.663	55.441	55.841	0	0.016081	-0.00012224	NaN	4.897	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60160			24610	7212	16287	16445							-0.04939395159453852
YEVNGNQDI	9	Unmodified	_YEVNGNQDI_					0	0	0			REV__nc|ENSG00000086717|O14829-5|PPEF1	REV__nc|ENSG00000086717|O14829-5|PPEF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7393188476562	2	526.238178	1050.4618	-0.17091	-8.9939E-05	-1.1477	-0.00060398	-1.3186	-0.00069392	526.7395064982361	43.433	1.7054	43.433	42.764	44.47	0					80	59	2	0	0	0	0.27929	1	8232	8232		9.3831	0.035688	1	171580	+		24611	8275	16288	16446	33185	33185					-0.06140905075426417
YEVTLEIRR	9	Unmodified	_YEVTLEIRR_					0	0	0			REV__ENST00000530701.1_1_8:38279448-38315045:-|nuORF	REV__ENST00000530701.1_1_8:38279448-38315045:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8294067382812	2	589.830037	1177.64552	0.074748	4.4089E-05	-0.066479	-3.9211E-05	0.0082696	4.8776E-06	589.8299269724582	29.222	0.35446	29.301	29.152	29.507	0.078287					29	21	2	0	0	0	0.34704	1	3952	3952		0.52476	0	1	16592	+		24612	11441	16289	16447	33186	33186					0.0638048842608896
YEVTLEIRR	9	Unmodified	_YEVTLEIRR_					0	0	0			REV__ENST00000530701.1_1_8:38279448-38315045:-|nuORF	REV__ENST00000530701.1_1_8:38279448-38315045:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	589.830037	1177.64552	-0.02303	-1.3584E-05	0.14658	8.6457E-05	0.12355	7.2874E-05	589.8299467313138	29.391	0.34102	29.391	29.275	29.616	0	0.045174	0.0001571	NaN	0.52476	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23210	+		24613	11441	16289	16447							0.0638048842608896
YEVTLEIRR	9	Unmodified	_YEVTLEIRR_					0	0	0			REV__ENST00000530701.1_1_8:38279448-38315045:-|nuORF	REV__ENST00000530701.1_1_8:38279448-38315045:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	589.830037	1177.64552	0.074748	4.4089E-05	-0.066479	-3.9211E-05	0.0082696	4.8776E-06	589.8299269724582	29.222	0.35446	29.301	29.152	29.507	0.078287	-0.045174	-9.4238E-05	NaN	0.52476	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16592	+		24614	11441	16289	16447							0.0638048842608896
YEWFRELEL	9	Unmodified	_YEWFRELEL_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.8175048828125	2	642.816596	1283.61864	0.35363	0.00022732	-0.70904	-0.00045579	-0.35541	-0.00022847	642.8157891108459	81.584	0.37073	81.606	81.475	81.846	0.021866					18	13	2	0	0	0	0.26104	1	19788	19788		11.495	1.4208	1	126250			24615	379	16290	16448	33187	33187					-0.01182620185113592
YEWFRELEL	9	Unmodified	_YEWFRELEL_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	642.816596	1283.61864	0.742	0.00047697	-0.27111	-0.00017428	0.47089	0.00030269	643.3181302525228	81.581	0.28407	81.581	81.461	81.746	0	-0.012447	0.0001689	NaN	11.495	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107600			24616	379	16290	16448							-0.01182620185113592
YEWHEYSR	8	Unmodified	_YEWHEYSR_					0	0	0			REV__nc|ENSG00000157593|Q8TB61-5|SLC35B2	REV__nc|ENSG00000157593|Q8TB61-5|SLC35B2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2548217773438	2	585.254163	1168.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.61	1	57.679	57.179	58.179	0.068375								0	0	0	0.38822	1	12496	12496		4.3292	1.0479	1		+		24617	9780	16291	16449	33188	33188					-0.08373492601617727
YEYGKFHEY	9	Unmodified	_YEYGKFHEY_					0	0	0			REV__PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	REV__PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.769287109375	2	618.272021	1234.52949	0.030156	1.8644E-05	3.805	0.0023525	3.8352	0.0023712	618.2742941167419	93.713	0.34209	93.75	93.534	93.876	0.037369					18	12	2	0	0	0	0.259	1	23441	23441		1.6526	0.17072	1	90547	+		24618	10690	16292	16450	33189	33189					-0.0783945514460811
YEYIDIPF	8	Unmodified	_YEYIDIPF_					0	0	0		nc|ENSG00000130558|Q99784-5|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1;ENSG00000130558|ENST00000371793|OLFM1;OLFM1|p.N444S|1|0.12|ENSG00000130558|chr9:135120051-135120051|A/G|missense_variant	nc|ENSG00000130558|Q99784-5|OLFM1	nc|ENSG00000130558|Q99784-5|OLFM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7942504882812	2	530.255308	1058.49606	0.25279	0.00013405	-3.4926	-0.001852	-3.2398	-0.0017179	530.2530747622263	58.478	0.085251	58.548	58.476	58.561	0.070477					4	2	2	0	0	0	0.35759	1	12756	12756		10.183	0.83596	1	38839			24619	2475	16293	16451	33190	33190					-0.03084456916531053
YFAAVAGQD	9	Unmodified	_YFAAVAGQD_					0	0	0		ENST00000489079.1_1_7:87840172-87856229:-|nuORF;ENST00000488015.5_1_7:87840172-87849341:-|nuORF;nc|ENSG00000075142|P30626-3|SRI;nc|ENSG00000075142|P30626-2|SRI;ENSG00000075142|ENST00000265729|SRI;ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000489079.1_1_7:87840172-87856229:-|nuORF	ENST00000489079.1_1_7:87840172-87856229:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.2209167480469	2	471.2218	940.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.998	1	83.998	83.498	84.498	0								0	0	0	0.28409	1	20680	20680		2.3027	0	1				24620	811	16294	16452	33191	33191					-0.04355067407630031
YFADVVVTLL	10	Unmodified	_YFADVVVTLL_					0	0	0			REV__ENST00000511731.5_1_4:2428286-2451670:+|nuORF	REV__ENST00000511731.5_1_4:2428286-2451670:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.3109130859375	2	570.320983	1138.62741	0.18258	0.00010413	3.2184	0.0018355	3.401	0.0019397	570.3227613174167	69.333	0.20937	69.395	69.211	69.42	0.062126					9	7	2	0	0	0	0.3198	1	16034	16034		20.454	4.6064	1	88863	+		24621	10983	16295	16453	33192	33192					0.06364353451385796
YFALAPIATV	10	Unmodified	_YFALAPIATV_					0	0	0		nc|ENSG00000173239|Q5VYY2-2|LIPM;ENSG00000173239|ENST00000404743|LIPM	nc|ENSG00000173239|Q5VYY2-2|LIPM	nc|ENSG00000173239|Q5VYY2-2|LIPM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3028564453125	2	533.302593	1064.59063	0.74067	0.000395	0.070977	3.7852E-05	0.81164	0.00043285	533.3026163235199	65.88	0.52782	65.88	65.549	66.077	0					26	18	2	0	0	0	0.36288	1	15141	15141		15.847	3.3156	1	132440			24622	4537	16296	16454	33193	33193					0.06092101625449686
YFALRKIL	8	Unmodified	_YFALRKIL_					0	0	0		ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2713623046875	2	512.32112	1022.62769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.065	1	78.096	77.596	78.596	0.030556								0	0	0	0.38822	1	18715	18715		0.79363	0	1				24623	5483	16297	16455	33194	33194					0.11727817961900655
YFCCGLQDFT	10	Unmodified	_YFCCGLQDFT_					0	0	0		ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7405395507812	2	598.741185	1195.46782	0.17286	0.0001035	-0.23534	-0.00014091	-0.062483	-3.7411E-05	598.7408260107109	103.63	0.50681	103.63	103.37	103.87	0					76	50	2	0	0	0	0.46746	1	26636	26636		1.4819	0	1	163800			24624	3358	16298	16456	33195	33195					-0.12209846159771587
YFCYGSMHIY	10	Unmodified	_YFCYGSMHIY_					0	0	0			REV__NYNRIN|p.C1309Y|1|0.46|ENSG00000205978|chr14:24415675-24415675|G/A|missense_variant	REV__NYNRIN|p.C1309Y|1|0.46|ENSG00000205978|chr14:24415675-24415675|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	642.7651977539062	2	642.264827	1282.5151	0.49119	0.00031547	0.39436	0.00025328	0.88555	0.00056876	642.2649922144797	98.423	0.62003	98.423	98.137	98.757	0					91	32	4	0	0	0	0.45627	1	25165	25165		3.5965	0	1	585750	+		24625	12938	16299	16457	33196	33196					-0.11485566888768517
YFDEPVEL	8	Unmodified	_YFDEPVEL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.237060546875	2	506.237116	1010.45968	0.31973	0.00016186	-0.096495	-4.8849E-05	0.22324	0.00011301	506.2368637194707	71.324	0.53429	71.324	71.135	71.669	0					40	18	3	0	0	0	0.46914	1	16819	16819		16.942	4.4107	1	237140			24626	5650	16300	16458	33197	33197					-0.04513333813235931
YFDEPVEL	8	Unmodified	_YFDEPVEL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2370910644531	2	506.237116	1010.45968	0.38272	0.00019375	-0.14853	-7.5193E-05	0.23419	0.00011855	506.2369148210969	71.224	0.54399	71.283	71.056	71.6	0.058578					37	19	3	0	0	0	0.20402	1	16625	16625		42.095	23.96	1	323060			24627	5650	16300	16458	33198	33198					-0.04513333813235931
YFDESLVLL	9	Unmodified	_YFDESLVLL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1;GAL3ST1|p.D264Y|1|0.19|ENSG00000128242|chr22:30555435-30555435|C/A|missense_variant;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;ENSG00000197093|ENST00000360039|GAL3ST4;ENSG00000175229|ENST00000312006|GAL3ST3	ENSG00000128242|ENST00000406361|GAL3ST1;ENSG00000175229|ENST00000312006|GAL3ST3	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7901000976562	2	549.789515	1097.56448	0.2604	0.00014316	-3.5363	-0.0019442	-3.2759	-0.001801	550.2881851133238	91.076	1.1327	91.111	90.778	91.91	0.035446					100	40	4	0	0	0	0.045114	1	22641	22641		44.407	8.3628	1	364090			24628	2387;4619	16301	16459	33199	33199					0.01959787663327006
YFDGPHKF	8	Unmodified	_YFDGPHKF_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.2774353027344	2	505.74016	1009.46577	0.47784	0.00024166	0.10475	5.2976E-05	0.58259	0.00029464	505.73990585827596	54.924	0.40224	54.924	54.735	55.138	0					20	14	2	0	0	0	0.35759	1	11778	11778		13.508	3.3245	1	108660	+		24629	8346	16302	16460	33200	33200					-0.03858770791055122
YFDGPHKF	8	Unmodified	_YFDGPHKF_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	505.74016	1009.46577	0.53957	0.00027288	0.17033	8.6142E-05	0.7099	0.00035903	505.73993887901463	54.875	0.28536	54.94	54.803	55.089	0.065128	0.0080188	4.0503E-05	NaN	13.508	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76766	+		24630	8346	16302	16460							-0.03858770791055122
YFDIPLEHRE	10	Unmodified	_YFDIPLEHRE_					0	0	0		ENSG00000100557|ENST00000216445|CCDC198	ENSG00000100557|ENST00000216445|CCDC198	ENSG00000100557|ENST00000216445|CCDC198	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.2187805175781	3	440.21906	1317.63535	0.024536	1.0801E-05	0.14575	6.4163E-05	0.17029	7.4965E-05	440.21907864529584	91.064	0.9473	91.1	90.745	91.692	0.035446					44	34	2	0	0	0	0.46426	1	22784	22784		2.086	0.63089	1	100470			24631	1206	16303	16461	33201	33201					-0.010761192991594726
YFDLLGELM	9	Unmodified	_YFDLLGELM_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.3067626953125	2	550.770268	1099.52598	0.34156	0.00018812	0.13671	7.5296E-05	0.47827	0.00026342	550.7704146827202	102.68	0.32352	102.68	102.49	102.81	0					28	22	2	0	0	0	0.21603	1	26380	26380		20.454	14.1	1	60727			24632	1228	16304	16462	33202	33202					-0.019798412428372103
YFDLLGELM	9	Unmodified	_YFDLLGELM_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.8050537109375	2	550.770268	1099.52598	0.54221	0.00029863	0.057856	3.1865E-05	0.60007	0.0003305	550.770299799108	102.66	0.42783	102.7	102.44	102.87	0.040916					46	32	2	0	0	0	0.23975	1	26192	26192		14.838	8.4842	1	96042			24633	1228	16304	16462	33203	33203					-0.019798412428372103
YFDLLGELM	9	Oxidation (M)	_YFDLLGELM(Oxidation (M))_		YFDLLGELM(1)		YFDLLGELM(42)	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7676391601562	2	558.767726	1115.5209	0.35102	0.00019614	-0.29946	-0.00016733	0.051559	2.881E-05	558.7675916109339	91.226	0.59239	91.261	91.02	91.612	0.035446					42	20	4	0	0	0	0.0569	1	22720	22720		41.84	9.386	1	193360			24634	1228	16304	16463	33204	33204		73			-0.032241451054687786
YFDLLGELM	9	Oxidation (M)	_YFDLLGELM(Oxidation (M))_		YFDLLGELM(1)		YFDLLGELM(48)	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7672729492188	2	558.767726	1115.5209	0.62122	0.00034712	-0.62509	-0.00034928	-0.003873	-2.1641E-06	558.7672026482621	93.552	0.55406	93.589	93.359	93.913	0.037369					40	21	2	0	0	0	0.03472	1	23440	23440		47.749	15.295	1	229010			24635	1228	16304	16463	33205	33205		73			-0.032241451054687786
YFDLPAGLMA	10	Unmodified	_YFDLPAGLMA_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2698974609375	2	549.270435	1096.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.04	1	101.08	100.58	101.58	0.042839								0	0	0	0.33861	1	25708	25708		1.8442	1.0506	1				24636	971	16305	16464	33206	33206					-0.01808421522991921
YFDMWALI	8	Unmodified	_YFDMWALI_					0	0	0			REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF	REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.75244140625	2	529.754421	1057.49429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.258	1	55.324	54.824	55.824	0.065128								0	0	0	0.38796	1	11779	11779		14.582	0	1		+		24637	12036	16306	16465	33207	33207					-0.032157892061377424
YFDNRSFIWKF	11	Unmodified	_YFDNRSFIWKF_					0	0	0			REV__ENST00000395699.3_1_7:44922485-44922656:-|nuORF	REV__ENST00000395699.3_1_7:44922485-44922656:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7845153808594	3	508.254105	1521.74048	0.32728	0.00016634	-1.1961	-0.00060793	-0.86883	-0.00044158	508.5883020242727	62.408	0.15256	62.408	62.341	62.494	0					8	5	2	0	0	0	0.31097	1	14088	14088		1.3296	0.11481	1	86471	+		24638	11719	16307	16466	33208	33208					0.0004842189725877688
YFDPANGKF	9	Unmodified	_YFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7506713867188	2	529.750724	1057.4869	0.18553	9.8284E-05	-0.39893	-0.00021133	-0.2134	-0.00011305	529.7506814740843	51.963	0.7611	51.963	51.743	52.504	0					75	26	5	0	0	0	0.071889	1	10951	10951		55.503	38.39	1	552070			24639	4222	16308	16467	33209	33209					-0.03954805482203483
YFDPANGKF	9	Unmodified	_YFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7691040039062	2	529.750724	1057.4869	0.3089	0.00016364	-0.77168	-0.0004088	-0.46277	-0.00024515	529.7506058517971	51.906	0.73085	51.973	51.735	52.466	0.067173					77	27	5	0	0	0	0.26684	1	10807	10807		10.824	2.2306	1	531280			24640	4222	16308	16467	33210	33210					-0.03954805482203483
YFDPQYFEF	9	Unmodified	_YFDPQYFEF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.2689208984375	2	628.268947	1254.52334	0.34875	0.00021911	0.19561	0.0001229	0.54436	0.00034201	628.2689466012952	88.024	0.79298	88.024	87.855	88.648	0					57	29	4	0	0	0	0.088609	2	21934	21934;21979		34.932	16.786	1	656210			24641	948	16309	16468	33211;33212	33211					-0.09373973376159483
YFDPQYFEF	9	Unmodified	_YFDPQYFEF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	628.2689819335938	2	628.268947	1254.52334	0.33449	0.00021015	0.27552	0.0001731	0.61001	0.00038325	628.2689958256296	87.982	0.81346	88.012	87.823	88.636	0.030037					61	30	4	0	0	0	0.024248	2	21758	21758;21819		55.235	39.986	1	593030			24642	948	16309	16468	33213;33214	33213					-0.09373973376159483
YFDPTLTLF	9	Unmodified	_YFDPTLTLF_					0	0	0		ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7285766601562	2	558.784233	1115.55391	0.33849	0.00018915	-3.383	-0.0018904	-3.0445	-0.0017012	558.7822097551255	86.982	0.49025	87.01	86.859	87.349	0.027573					34	21	2	0	0	0	0.23598	1	21474	21474		15.847	1.0089	1	155880			24643	6885	16310	16469	33215	33215					0.0007580500889616815
YFDVEPFVF	9	Unmodified	_YFDVEPFVF_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.174560546875	2	581.776408	1161.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.648	1	97.689	97.189	98.189	0.040855								0	0	0	0.25992	1	24676	24676		7.2892	4.0079	1				24644	1377	16311	16470	33216	33216					-0.03604481508136814
YFEATRGKFS	10	Unmodified	_YFEATRGKFS_					0	0	0		ENST00000554315.5_1_14:73753704-73876743:-|nuORF	ENST00000554315.5_1_14:73753704-73876743:-|nuORF	ENST00000554315.5_1_14:73753704-73876743:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8108520507812	2	603.301113	1204.58767	0.71718	0.00043268	-2.4586	-0.0014833	-1.7414	-0.0010506	603.800970891623	70.998	0.62926	71.056	70.862	71.492	0.058578					31	22	2	0	0	0	0.31456	1	16557	16557		14.838	4.7643	1	81146			24645	7115	16312	16471	33217	33217					-0.006437734993369304
YFEEKSKGFI	10	Unmodified	_YFEEKSKGFI_					0	0	0			REV__ENST00000486616.5_1_3:38047918-38048543:+|nuORF	REV__ENST00000486616.5_1_3:38047918-38048543:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.5778503417969	3	416.548406	1246.62339	0.16665	6.9419E-05	-3.4788	-0.0014491	-3.3122	-0.0013797	416.8798093828906	46.079	0.145	46.079	45.981	46.126	0					6	4	2	0	0	0	0.31766	1	9126	9126		5.7834	0.88642	1	11778	+		24646	9235	16313	16472	33218	33218					0.009942639576593137
YFEELIQL	8	Unmodified	_YFEELIQL_					0	0	0			REV__nc|ENSG00000086717|O14829-5|PPEF1;REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2939453125	2	527.776408	1053.53826	0.50647	0.0002673	0.13581	7.1677E-05	0.64228	0.00033898	527.7763752309459	79.469	0.73969	79.469	79.157	79.897	0					64	25	3	0	0	0	0.3565	1	19414	19414		30.225	5.5509	1	521430	+		24647	8275;10869	16314	16473	33219	33219					0.01363518491848481
YFEELITML	9	Oxidation (M)	_YFEELITM(Oxidation (M))L_		YFEELITM(1)L		YFEELITM(52)L	0	0	1		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.78955078125	2	587.788658	1173.56276	0.57432	0.00033758	0.79615	0.00046797	1.3705	0.00080555	587.7889920924807	88.461	0.47392	88.461	88.317	88.791	0					50	19	3	0	0	0	0.028398	1	22045	22045		52.268	37.43	1	421800			24648	200;3052	16315	16474	33220	33220		5			-0.017075894169465755
YFEELITML	9	Oxidation (M)	_YFEELITM(Oxidation (M))L_		YFEELITM(1)L		YFEELITM(75)L	0	0	1		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7890014648438	2	587.788658	1173.56276	0.5197	0.00030547	0.092865	5.4585E-05	0.61256	0.00036006	587.788683993269	90.861	2.2056	90.861	90.282	92.487	0					156	81	3	0	0	0	0.0074933	4	22779	22685;22733;22779;22837		74.929	60.091	1	576990			24649	200;3052	16315	16474	33221;33222;33223;33224	33223		5			-0.017075894169465755
YFEELITML	9	Oxidation (M)	_YFEELITM(Oxidation (M))L_		YFEELITM(1)L		YFEELITM(68)L	0	0	1		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.7889404296875	2	587.788658	1173.56276	0.38619	0.000227	0.18987	0.00011161	0.57606	0.0003386	587.7887146321934	90.83	2.1871	90.865	90.264	92.451	0.035446					180	81	3	0	0	0	0.0097093	4	22661	22512;22557;22611;22661		68.081	53.242	1	514580			24650	200;3052	16315	16474	33225;33226;33227;33228	33228		5			-0.017075894169465755
YFEELITML	9	Oxidation (M)	_YFEELITM(Oxidation (M))L_					0	0	1		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	587.788658	1173.56276	0.65829	0.00038693	0.85294	0.00050135	1.5112	0.00088828	587.7889266787441	88.512	0.55034	88.543	88.196	88.747	0.030037	0.040959	3.6388E-05	NaN	52.268	59	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472900			24651	200;3052	16315	16474				5			-0.017075894169465755
YFEELITML	9	Unmodified	_YFEELITML_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.7914428710938	2	579.791201	1157.56785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.662	1	99.662	99.162	100.16	0								0	0	0	0.22786	1	25441	25441		13.906	3.1065	1				24652	200;3052	16315	16475	33229	33229					-0.004632855543150072
YFEELITML	9	Unmodified	_YFEELITML_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7916259765625	2	579.791201	1157.56785	0.65306	0.00037864	0.20908	0.00012122	0.86213	0.00049986	579.7909302797246	99.522	0.3369	99.565	99.409	99.746	0.042839					39	23	2	0	0	0	0.27332	1	25258	25258		10.074	2.1638	1	406020			24653	200;3052	16315	16475	33230	33230					-0.004632855543150072
YFEELITML	9	Unmodified	_YFEELITML_					0	0	0		CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|6|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	579.791201	1157.56785	0.55061	0.00031924	1.7004	0.0009859	2.251	0.0013051	579.7922957679041	99.713	0.054581	99.713	99.688	99.743	0	0.074033	0.0015635	NaN	10.074	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236160			24654	200;3052	16315	16475							-0.004632855543150072
YFESDPHC	8	Unmodified	_YFESDPHC_					0	0	0			REV__nc|ENSG00000129450|Q9Y336-2|SIGLEC9	REV__nc|ENSG00000129450|Q9Y336-2|SIGLEC9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7717590332031	2	499.189642	996.364732	0.14242	7.1093E-05	-2.8476	-0.0014215	-2.7052	-0.0013504	499.18805940342173	49.078	0.33097	49.155	48.981	49.312	0.076607					15	11	2	0	0	0	0.3576	1	9864	9864		0.79363	0.10326	1	26904	+		24655	12788	16316	16476	33231	33231					-0.13359590556069634
YFETEDRAY	9	Unmodified	_YFETEDRAY_					0	0	0			REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.25927734375	2	597.259111	1192.50367	-0.025974	-1.5513E-05	0.18124	0.00010825	0.15526	9.2733E-05	597.2589178842233	73.324	0.60618	73.324	73.084	73.69	0					27	21	2	0	0	0	0.31496	1	17437	17437		4.756	0	1	437750	+		24656	10581	16317	16477	33232	33232					-0.08488349386902883
YFETYREVI	9	Unmodified	_YFETYREVI_					0	0	0			REV__nc|ENSG00000163110|Q96HC4-3|PDLIM5	REV__nc|ENSG00000163110|Q96HC4-3|PDLIM5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.33673095703125	3	407.20464	1218.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.73	1	67.73	67.23	68.23	0								0	0	0	0.28073	1	15718	15718		2.9952	1.151	1		+		24657	9924	16318	16478	33233	33233					-0.008463090764280423
YFFDEWMFG	9	Unmodified	_YFFDEWMFG_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2518920898438	2	621.252243	1240.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.435	1	46.435	45.935	46.935	0								0	0	0	0.29233	1	9237	9237		0.6015	0.076735	1				24658	2736	16319	16479	33234	33234					-0.12069298419714869
YFFGFEEFV	9	Unmodified	_YFFGFEEFV_					0	0	0			REV__ENSG00000149968|ENST00000299855|MMP3	REV__ENSG00000149968|ENST00000299855|MMP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.3030395507812	2	592.768583	1183.52261	0.406	0.00024066	-2.4617	-0.0014592	-2.0557	-0.0012186	592.7670028195803	74.466	0.89038	74.514	74.257	75.147	0.048546					45	31	3	0	0	0	0.2491	1	17607	17607		8.5933	3.3626	1	120600	+		24659	9622	16320	16480	33235	33235					-0.06180768025205907
YFFGFEEFV	9	Unmodified	_YFFGFEEFV_					0	0	0			REV__ENSG00000149968|ENST00000299855|MMP3	REV__ENSG00000149968|ENST00000299855|MMP3	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	592.768583	1183.52261	0.44105	0.00026144	-2.4682	-0.0014631	-2.0272	-0.0012016	592.7669171027634	74.834	0.8867	74.834	74.262	75.148	0	0.15973	-3.8964E-06	NaN	8.5933	50	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97031	+		24660	9622	16320	16480							-0.06180768025205907
YFFHIRQW	8	Unmodified	_YFFHIRQW_					0	0	0			REV__ENSG00000167769|ENST00000301452|ACER1	REV__ENSG00000167769|ENST00000301452|ACER1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.801513671875	2	598.803626	1195.5927	0.49807	0.00029825	-2.3686	-0.0014183	-1.8705	-0.0011201	598.8008590095592	70.609	0.99385	70.609	70.043	71.037	0					53	21	4	0	0	0	0.53345	1	16685	16685		5.7604	0.86342	1	295450	+		24661	10131	16321	16481	33236	33236					0.002725751539628618
YFFIEVEC	8	Unmodified	_YFFIEVEC_					0	0	0		ENST00000583938.5_1_18:72178083-72181050:+|nuORF;nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2	ENST00000583938.5_1_18:72178083-72181050:+|nuORF	ENST00000583938.5_1_18:72178083-72181050:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2356567382812	2	525.236061	1048.45757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.907	1	26.993	26.493	27.493	0.0867								0	0	0	0.38822	1	3265	3265		0.69038	0	1				24662	2624	16322	16482	33237	33237					-0.06472085822679219
YFFLYIQTR	9	Unmodified	_YFFLYIQTR_					0	0	0			REV__ENST00000359297.6_1_1:36806610-36807063:-|nuORF	REV__ENST00000359297.6_1_1:36806610-36807063:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.8306274414062	2	625.832049	1249.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.471	1	39.471	38.971	39.971	0								0	0	0	0.29233	1	7133	7133		0.6015	0	1		+		24663	11526	16323	16483	33238	33238					0.03470577919779316
YFGIYYFGS	9	Unmodified	_YFGIYYFGS_					0	0	0			REV__nc|ENSG00000179934|P51685-2|CCR8	REV__nc|ENSG00000179934|P51685-2|CCR8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7579956054688	2	558.755475	1115.4964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.294	1	24.394	23.894	24.894	0.099739								0	0	0	0.29233	1	2519	2519		0.6015	0.076735	1		+		24664	10493	16324	16484	33239	33239					-0.05673037196675068
YFGLNRLLT	9	Unmodified	_YFGLNRLLT_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2844848632812	2	548.811116	1095.60768	0.32064	0.00017597	0.82182	0.00045102	1.1425	0.00062699	548.8109885872465	68.977	0.34885	69.039	68.793	69.142	0.062126					25	12	3	0	0	0	0.2298	1	15954	15954		16.942	2.104	1	234440	+		24665	8487	16325	16485	33240	33240					0.06370022231271832
YFHHMGKC	8	Unmodified	_YFHHMGKC_					0	0	0		nc|ENSG00000132530|Q6GPH4-6|XAF1;ENST00000575369.5_1_17:6662992-6674357:+|nuORF;nc|ENSG00000132530|Q6GPH4-2|XAF1;nc|ENSG00000132530|Q6GPH4-7|XAF1;ENSG00000132530|ENST00000361842|XAF1	nc|ENSG00000132530|Q6GPH4-6|XAF1	nc|ENSG00000132530|Q6GPH4-6|XAF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.72003173828125	2	511.72039	1021.42623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.209	1	21.209	20.709	21.709	0								0	0	0	0.38822	1	1795	1795		0	0	1				24666	2578	16326	16486	33241	33241					-0.08362937337767562
YFHIEWSCS	9	Unmodified	_YFHIEWSCS_					0	0	0			REV__ENST00000344442.9_2_4:113578522-113578567:+|nuORF	REV__ENST00000344442.9_2_4:113578522-113578567:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2481079101562	2	586.247492	1170.48043	0.50405	0.0002955	0.84282	0.0004941	1.3469	0.0007896	586.2478991367968	95.159	0.34737	95.159	95.026	95.374	0					27	15	2	0	0	0	0.3354	1	24101	24101		2.0598	0.21551	1	106180	+		24667	11480	16327	16487	33242	33242					-0.09799066705227233
YFHINQTL	8	Unmodified	_YFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.7329711914062	2	518.266542	1034.51853	0.37332	0.00019348	2.7383	0.0014191	3.1116	0.0016126	518.267960626215	53.088	0.41279	53.154	52.955	53.367	0.06543					29	19	2	0	0	0	0.35069	1	11126	11126		20.454	0	1	78864			24668	2620	16328	16488	33243	33243					0.002651872717478909
YFHNIVNPGC	10	Unmodified	_YFHNIVNPGC_					0	0	0			REV__ENSG00000180090|ENST00000323404|OR3A1	REV__ENSG00000180090|ENST00000323404|OR3A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.269775390625	2	582.268758	1162.52296	0.67388	0.00039238	-0.58719	-0.0003419	0.086691	5.0477E-05	582.7696844640982	53.395	1.0726	53.461	53.242	54.315	0.06543					91	46	3	0	0	0	0.3077	1	11229	11229		21.747	0	1	265380	+		24669	10498	16329	16489	33244	33244					-0.05179671576979672
YFHNIVNPGC	10	Unmodified	_YFHNIVNPGC_					0	0	0			REV__ENSG00000180090|ENST00000323404|OR3A1	REV__ENSG00000180090|ENST00000323404|OR3A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.269775390625	2	582.268758	1162.52296	0.67388	0.00039238	-0.58719	-0.0003419	0.086691	5.0477E-05	582.7696844640982	53.395	1.0726	53.461	53.242	54.315	0.06543					91	46	3	0	0	0	0.29716	1	11229	11229		21.747	0	1	265380	+		24670	10498	16329	16489	33245	33245					-0.05179671576979672
YFIFNIHYP	9	Unmodified	_YFIFNIHYP_					0	0	0			REV__ENSG00000078589|ENST00000171757|P2RY10	REV__ENSG00000078589|ENST00000171757|P2RY10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.308349609375	2	607.305667	1212.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.307	1	52.307	51.807	52.807	0								0	0	0	0.25692	1	11014	11014		7.9102	2.1783	1		+		24671	8216	16330	16490	33246	33246					-0.0010138014299627685
YFIFVTDFL	9	Unmodified	_YFIFVTDFL_					0	0	0			REV__RALGAPB|p.P1159L|1|0.04|ENSG00000170471|chr20:38558398-38558398|C/T|missense_variant	REV__RALGAPB|p.P1159L|1|0.04|ENSG00000170471|chr20:38558398-38558398|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7706298828125	2	582.802426	1163.5903	0.76076	0.00044337	3.4381	0.0020037	4.1988	0.0024471	583.3055101225118	53.999	0.66586	54.064	53.761	54.427	0.065128					27	24	2	0	0	0	0.25051	1	11337	11337		7.9102	0.62092	1	153800	+		24672	12972	16331	16491	33247	33247					0.015046819055896776
YFIKKYSDM	9	Unmodified	_YFIKKYSDM_					0	0	0			REV__ENST00000603680.5_1_12:51748165-51753149:-|nuORF	REV__ENST00000603680.5_1_12:51748165-51753149:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7959594726562	2	597.796817	1193.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.884	1	70.943	70.443	71.443	0.058578								0	0	0	0.24643	1	16521	16521		10.074	1.3285	1		+		24673	9349	16332	16492	33248	33248					-0.009964634601828948
YFILFIVFVI	10	Unmodified	_YFILFIVFVI_					0	0	0			REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant	REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3863525390625	2	637.383386	1272.75222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.85	1	101.89	101.39	102.39	0.042656								0	0	0	0.33861	1	25947	25947		1.8442	0	1		+		24674	10281	16333	16493	33249	33249					0.12675270658542104
YFILFIVFVI	10	Unmodified	_YFILFIVFVI_					0	0	0			REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant	REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3864135742188	2	637.383386	1272.75222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.01	1	102.06	101.56	102.56	0.042656								0	0	0	0.33861	1	25996	25996		1.8442	0	1		+		24675	10281	16333	16493	33250	33250					0.12675270658542104
YFIPEFNLF	9	Unmodified	_YFIPEFNLF_					0	0	0		ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3004760742188	2	595.30005	1188.58555	0.17028	0.00010137	0.66955	0.00039858	0.83983	0.00049995	595.3002442773122	102.82	0.97099	102.82	102.45	103.42	0					177	64	4	0	0	0	0.0043613	5	26424	26359;26398;26424;26464;26505		96.285	28.941	1	1040600			24676	4011	16334	16494	33251;33252;33253;33254;33255	33253					-0.0012020223716717737
YFIPEFNLF	9	Unmodified	_YFIPEFNLF_					0	0	0		ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.300537109375	2	595.30005	1188.58555	0.26502	0.00015777	0.67088	0.00039938	0.9359	0.00055714	595.3002322017054	102.76	0.9104	102.8	102.33	103.24	0.040916					192	71	4	0	0	0	0.0045534	5	26205	26205;26243;26284;26325;26340		88.954	27.596	1	811540			24677	4011	16334	16494	33256;33257;33258;33259;33260	33256					-0.0012020223716717737
YFIPEFNLF	9	Unmodified	_YFIPEFNLF_					0	0	0		ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3009643554688	2	595.30005	1188.58555	0.25866	0.00015398	0.96864	0.00057663	1.2273	0.00073061	595.299988005059	103.28	0.2472	103.32	103.18	103.43	0.03791					46	26	2	0	0	0	0.27332	1	26364	26364		10.074	0	1	128510			24678	4011	16334	16494	33261	33261					-0.0012020223716717737
YFIPEFNLF	9	Unmodified	_YFIPEFNLF_					0	0	0		ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	595.30005	1188.58555	0.12935	7.7001E-05	2.5099	0.0014942	2.6393	0.0015712	595.3004710683874	103.54	0.11068	103.54	103.47	103.58	0	0.10853	0.0015122	NaN	10.074	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75965			24679	4011	16334	16494							-0.0012020223716717737
YFIPELFE	8	Unmodified	_YFIPELFE_					0	0	0		tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.254638671875	2	529.265676	1056.5168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.151	1	86.151	85.651	86.651	0								0	0	0	0.38822	1	21335	21335		10.183	0.83596	1				24680	13454	16335	16495	33262	33262					-0.009198665368785441
YFIRNSPK	8	Unmodified	_YFIRNSPK_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|13|1|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|13|1|sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.7822265625	2	512.782359	1023.55016	-0.10707	-5.4904E-05	-0.24412	-0.00012518	-0.35119	-0.00018009	512.7822638712797	27.564	0.37196	27.651	27.57	27.942	0.0867					37	25	2	0	0	0	0.53494	1	3498	3498		4.756	0.81161	1	34478	+		24681	12673	16336	16496	33263	33263					0.039331800256945826
YFISHVLAF	9	Unmodified	_YFISHVLAF_					0	0	0		ENST00000459969.5_1_2:10262865-10264033:+|nuORF;RRM2|p.L193Sfs*6|1|0.07|ENSG00000171848|chr2:10126878-10126879|-/T|frameshift_variant;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENST00000459969.5_1_2:10262865-10264033:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.3319702148438	2	548.794935	1095.57532	0.099594	5.4657E-05	0.2103	0.00011541	0.3099	0.00017007	549.2964031363828	73.258	0.3952	73.258	73.027	73.422	0					19	13	2	0	0	0	0.17491	1	17371	17371		28.487	11.545	1	218690			24682	4464	16337	16497	33264	33264					0.031352348282553066
YFISHVLAF	9	Unmodified	_YFISHVLAF_					0	0	0		ENST00000459969.5_1_2:10262865-10264033:+|nuORF;RRM2|p.L193Sfs*6|1|0.07|ENSG00000171848|chr2:10126878-10126879|-/T|frameshift_variant;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENST00000459969.5_1_2:10262865-10264033:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.33203125	2	548.794935	1095.57532	0.25129	0.0001379	-0.22291	-0.00012233	0.028374	1.5571E-05	549.2963886462543	73.115	0.34244	73.168	73.036	73.379	0.052567					22	12	3	0	0	0	0.20845	1	17194	17194		21.747	5.8995	1	236690			24683	4464	16337	16497	33265	33265					0.031352348282553066
YFKEKNFD	8	Unmodified	_YFKEKNFD_					0	0	0			REV__tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1	REV__tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7626953125	2	545.763832	1089.51311	-0.21919	-0.00011963	-0.62747	-0.00034245	-0.84666	-0.00046208	545.7633871325933	23.784	0.65879	23.784	23.499	24.158	0					108	60	2	0	0	0	0.54097	1	2587	2587		0.69038	0	1	28135	+		24684	13148	16338	16498	33266	33266					-0.02806536310708907
YFKFILCR	8	Unmodified	_YFKFILCR_					0	0	0		ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7881469726562	2	545.29933	1088.58411	0.2061	0.00011239	2.0259	0.0011047	2.232	0.0012171	545.3005583796875	56.823	0.32553	56.823	56.702	57.028	0					21	11	3	0	0	0	0.35759	1	12454	12454		9.3474	0	1	142160			24685	2902	16339	16499	33267	33267					0.04335885193108879
YFLAWFHMP	9	Unmodified	_YFLAWFHMP_					0	0	0			REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant	REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7926635742188	2	606.288963	1210.56337	0.55177	0.00033453	1.9277	0.0011688	2.4795	0.0015033	606.2901801862307	102.83	0.32047	102.83	102.68	103	0					35	22	2	0	0	0	0.23437	3	26381	26381;26401;26437		14.582	3.7578	1	95256	+		24686	10844	16340	16500	33268;33269;33270	33268					-0.03348705186567713
YFLAWFHMP	9	Unmodified	_YFLAWFHMP_					0	0	0			REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant	REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.29052734375	2	606.288963	1210.56337	0.81587	0.00049465	1.3926	0.0008443	2.2084	0.001339	606.2898028373266	102.74	0.36241	102.78	102.65	103.02	0.040916					45	29	2	0	0	0	0.23437	2	26189	26189;26237		14.582	3.7578	1	146050	+		24687	10844	16340	16500	33271;33272	33271					-0.03348705186567713
YFLDNDKYI	9	Unmodified	_YFLDNDKYI_					0	0	0		tr|U7SV19|U7SV19_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01481PE=4SV=1	tr|U7SV19|U7SV19_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01481PE=4SV=1	tr|U7SV19|U7SV19_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01481PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2670288085938	2	595.790047	1189.56554	0.2938	0.00017504	0.066397	3.9559E-05	0.3602	0.0002146	595.7897984584364	57.864	0.34794	57.864	57.679	58.027	0					20	11	2	0	0	0	0.24791	1	12682	12682		10.074	4.3421	1	111610			24688	13619	16341	16501	33273	33273					-0.021659979677679075
YFLEMQEKLER	11	Unmodified	_YFLEMQEKLER_					0	0	0		ENST00000608648.1_1_19:18220994-18239762:+|nuORF;nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	ENST00000608648.1_1_19:18220994-18239762:+|nuORF	ENST00000608648.1_1_19:18220994-18239762:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.251708984375	3	495.918393	1484.73335	0.47038	0.00023327	-2.1397	-0.0010611	-1.6693	-0.00082783	495.91713775330226	57.489	0.3583	57.558	57.393	57.752	0.068371					29	12	3	0	0	0	0.38054	1	12459	12459		8.7518	4.6352	1	138760			24689	1122	16342	16502	33274	33274					0.010373212345484717
YFLEMQEKLER	11	Unmodified	_YFLEMQEKLER_					0	0	0		ENST00000608648.1_1_19:18220994-18239762:+|nuORF;nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	ENST00000608648.1_1_19:18220994-18239762:+|nuORF	ENST00000608648.1_1_19:18220994-18239762:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	495.918393	1484.73335	0.62686	0.00031087	-2.634	-0.0013062	-2.0071	-0.00099535	495.9170861780599	57.575	0.42088	57.575	57.408	57.829	0	0.0087079	-0.00038559	NaN	8.7518	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204950			24690	1122	16342	16502							0.010373212345484717
YFLKGVLVF	9	Unmodified	_YFLKGVLVF_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3234252929688	2	543.323328	1084.6321	0.31189	0.00016945	0.17424	9.4671E-05	0.48613	0.00026413	543.3233048545579	77.826	0.86871	77.826	77.579	78.448	0					62	29	3	0	0	0	0.021119	2	18778	18778;18831		57.471	40.529	1	712210			24691	504	16343	16503	33275;33276	33275					0.09317282384790815
YFLKGVLVF	9	Unmodified	_YFLKGVLVF_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.3233032226562	2	543.323328	1084.6321	0.50457	0.00027415	0.087347	4.7457E-05	0.59192	0.0003216	543.3231837589843	77.774	0.90276	77.808	77.553	78.456	0.034485					65	30	3	0	0	0	0.011655	2	18606	18606;18655		64.236	47.294	1	698420			24692	504	16343	16503	33277;33278	33277					0.09317282384790815
YFLLNAEDY	9	Unmodified	_YFLLNAEDY_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3;ENST00000485093.1_1_10:98286995-98287879:-|nuORF	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7579345703125	2	574.268947	1146.52334	0.33626	0.0001931	0.055532	3.1891E-05	0.39179	0.00022499	574.268911365933	90.986	1.3796	90.986	90.708	92.088	0					76	33	3	0	0	0	0.19241	1	22879	22879		19.439	6.9074	1	3962900			24693	853	16344	16504	33279	33279					-0.04405973376151451
YFLLQFTF	8	Unmodified	_YFLLQFTF_					0	0	0			REV__ENSG00000152078|ENST00000370203|TLCD4	REV__ENSG00000152078|ENST00000370203|TLCD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.7838745117188	2	539.784036	1077.55352	0.15196	8.2023E-05	0.34524	0.00018636	0.4972	0.00026838	539.7840423732457	104.79	0.36788	104.79	104.6	104.96	0					66	35	3	0	0	0	0.52502	1	26961	26961		9.3474	1.4373	1	145530	+		24694	9663	16345	16505	33280	33280					0.017844300797150936
YFLLQFTF	8	Unmodified	_YFLLQFTF_					0	0	0			REV__ENSG00000152078|ENST00000370203|TLCD4	REV__ENSG00000152078|ENST00000370203|TLCD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7845458984375	2	539.784036	1077.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.61	1	104.65	104.15	105.15	0.034004								0	0	0	0.38822	1	26749	26749		5.2307	1.6342	1		+		24695	9663	16345	16505	33281	33281					0.017844300797150936
YFLLRDLPSWS	11	Unmodified	_YFLLRDLPSWS_					0	0	0		nc|ENSG00000151876|Q9UKT5-2|FBXO4;ENSG00000151876|ENST00000281623|FBXO4	nc|ENSG00000151876|Q9UKT5-2|FBXO4	nc|ENSG00000151876|Q9UKT5-2|FBXO4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.7452392578125	3	466.246839	1395.71869	-0.15791	-7.3626E-05	-2.7911	-0.0013013	-2.949	-0.001375	466.5797311287815	43.312	0.12709	43.312	43.263	43.39	0					5	3	2	0	0	0	0.31072	1	8294	8294		4.7159	3.2608	1	18919			24696	3477	16346	16506	33282	33282					0.03665617148703859
YFLLSHLAF	9	Unmodified	_YFLLSHLAF_					0	0	0		ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8027954101562	2	555.80276	1109.59097	0.44536	0.00024753	0.49108	0.00027295	0.93644	0.00052048	555.8028448851873	77.886	1.0079	77.886	77.532	78.54	0					60	34	2	0	0	0	0.11022	1	18834	18834		30.225	0	1	226700			24697	5082	16347	16507	33283	33283					0.04055521345321722
YFLLSHLAF	9	Unmodified	_YFLLSHLAF_					0	0	0		ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.80322265625	2	555.80276	1109.59097	0.7069	0.0003929	0.17594	9.7787E-05	0.88284	0.00049068	555.8025739090847	77.872	0.40178	77.907	77.74	78.142	0.034485					31	13	3	0	0	0	0.05573	1	18668	18668		42.095	0	1	190640			24698	5082	16347	16507	33284	33284					0.04055521345321722
YFLNEIIF	8	Unmodified	_YFLNEIIF_					0	0	0			REV__ENST00000278616.8_1_11:108151731-108151785:+|nuORF	REV__ENST00000278616.8_1_11:108151731-108151785:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.7633056640625	2	529.781493	1057.54843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.483	1	76.522	76.022	77.022	0.03923								0	0	0	0.38822	1	18232	18232		6.3541	0	1		+		24699	11290	16348	16508	33285	33285					0.021961262170862028
YFLSEKQY	8	Unmodified	_YFLSEKQY_					0	0	0		nc|ENSG00000121904|Q7Z408|CSMD2;ENSG00000121904|ENST00000373381|CSMD2	nc|ENSG00000121904|Q7Z408|CSMD2	nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.3052368164062	2	539.266207	1076.51786	0.39035	0.0002105	-4.3576	-0.0023499	-3.9672	-0.0021394	539.7648313968963	96.274	0.31175	96.274	96.048	96.359	0					18	14	2	0	0	0	0.35759	1	24431	24431		9.3474	4.1168	1	155090			24700	2168	16349	16509	33286	33286					-0.017336521679453654
YFLWRLLAL	9	Unmodified	_YFLWRLLAL_					0	0	0		nc|ENSG00000160781|Q6TCH4-4|PAQR6;nc|ENSG00000160781|Q6TCH4-5|PAQR6;ENSG00000160781|ENST00000292291|PAQR6	nc|ENSG00000160781|Q6TCH4-4|PAQR6	nc|ENSG00000160781|Q6TCH4-4|PAQR6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.847412109375	2	597.855327	1193.6961	0.19829	0.00011855	1.5428	0.00092239	1.7411	0.0010409	597.8561514598564	90.337	0.56506	90.337	90.118	90.683	0					40	22	2	0	0	0	0.33356	1	22571	22571		2.3027	0.24298	1	161130			24701	3776	16350	16510	33287	33287					0.10700062541741318
YFLWYLTY	8	Unmodified	_YFLWYLTY_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7896118164062	2	584.789318	1167.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.129	1	21.129	20.629	21.629	0								0	0	0	0.38822	1	1775	1775		0	0	1		+		24702	10259	16351	16511	33288	33288					-0.012995872658848384
YFLYRVVFH	9	Unmodified	_YFLYRVVFH_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2945556640625	2	622.334759	1242.65496	0.03836	2.3873E-05	-3.7455	-0.002331	-3.7072	-0.0023071	622.8341379025621	71.575	0.2466	71.634	71.542	71.789	0.058578					12	8	2	0	0	0	0.24749	1	16732	16732		9.3474	1.1919	1	140920			24703	3554	16352	16512	33289	33289					0.04334301502285598
YFMTYEWL	8	Unmodified	_YFMTYEWL_					0	0	0		ENST00000440964.1_1_3:48895145-48933199:-|nuORF;ENSG00000178537|ENST00000319017|SLC25A20	ENST00000440964.1_1_3:48895145-48933199:-|nuORF	ENST00000440964.1_1_3:48895145-48933199:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.28564453125	2	576.757161	1151.49977	0.49439	0.00028514	-2.378	-0.0013715	-1.8836	-0.0010864	576.7552322997441	55.571	0.10984	55.571	55.525	55.635	0					5	3	2	0	0	0	0.3576	1	12016	12016		5.7604	1.0044	1	41495			24704	4746	16353	16513	33290	33290					-0.06992110414307717
YFNDLNKNQL	10	Unmodified	_YFNDLNKNQL_					0	0	0		tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8193359375	2	634.817127	1267.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.892	1	95.93	95.43	96.43	0.038872								0	0	0	0.33599	1	24139	24139		4.897	1.6157	1				24705	13739	16354	16514	33291	33291					-0.003404058161777357
YFNNESDII	9	Unmodified	_YFNNESDII_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.7548217773438	2	557.756204	1113.49785	0.31203	0.00017404	-2.0433	-0.0011397	-1.7313	-0.00096563	557.7548348119159	71.832	0.2507	71.832	71.669	71.92	0					13	8	2	0	0	0	0.20367	1	16985	16985		18.135	1.1927	1	124350			24706	2591	16355	16515	33292	33292					-0.054354478985715104
YFNNESDII	9	Unmodified	_YFNNESDII_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7554321289062	2	557.756204	1113.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.818	1	71.873	71.373	72.373	0.055939								0	0	0	0.17567	1	16806	16806		21.747	5.8995	1				24707	2591	16355	16515	33293	33293					-0.054354478985715104
YFPEPVTVSW	10	Unmodified	_YFPEPVTVSW_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.3219604492188	2	612.800414	1223.58628	0.20167	0.00012358	-0.47729	-0.00029248	-0.27561	-0.0001689	612.7998116155939	82.913	0.16722	82.913	82.823	82.99	0					8	5	2	0	0	0	0.25276	1	20371	20371		27.629	1.3607	1	76119			24708	7601	16356	16516	33294	33294					-0.016574075880953387
YFPLFPPSF	9	Unmodified	_YFPLFPPSF_					0	0	0			REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|77|3|anti-sense	REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|77|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7693481445312	2	557.784036	1113.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.807	1	62.88	62.38	63.38	0.072701								0	0	0	0.2722	1	14074	14074		4.756	0	1		+		24709	13021	16357	16517	33295	33295					0.0012843007971241605
YFPPKGYAF	9	Unmodified	_YFPPKGYAF_					0	0	0		nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000113742|Q17RY0-3|CPEB4	nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7656860351562	2	545.273835	1088.53312	0.39078	0.00021308	-0.32572	-0.00017761	0.065057	3.5474E-05	545.273649192115	55.915	0.22141	55.915	55.813	56.035	0					12	7	2	0	0	0	0.164	1	12092	12092		30.225	10.786	1	72230			24710	1570	16358	16518	33296	33296					-0.007607405801081768
YFPRNVTM	8	Unmodified	_YFPRNVTM_					0	0	0		nc|ENSG00000166349|P15918-2|RAG1;ENSG00000166349|ENST00000299440|RAG1	nc|ENSG00000166349|P15918-2|RAG1	nc|ENSG00000166349|P15918-2|RAG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2752685546875	2	514.25512	1026.49569	0.077643	3.9928E-05	0.11876	6.1071E-05	0.1964	0.000101	514.2552637514273	45.294	0.29448	45.382	45.211	45.505	0.087543					17	11	2	0	0	0	0.3576	1	8719	8719		7.9102	1.5561	1	43711			24711	4154	16359	16519	33297	33297					-0.016501551173860207
YFPSLQPRKDL	11	Unmodified	_YFPSLQPRKDL_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.9034423828125	3	455.250472	1362.72959	0.12486	5.6842E-05	-3.5551	-0.0016184	-3.4302	-0.0015616	455.91776902620506	58.257	0.37706	58.327	58.184	58.561	0.070477					37	13	4	0	0	0	0.31091	1	12757	12757		1.1098	0.48293	1	66243			24712	4419	16360	16520	33298	33298					0.06273019522996037
YFQISPCDEF	10	Unmodified	_YFQISPCDEF_					0	0	0			REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF	REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.7683715820312	2	624.765714	1247.51688	0.079782	4.9845E-05	3.1017	0.0019378	3.1815	0.0019877	624.7674456407821	77.108	0.44706	77.108	76.807	77.254	0					58	15	5	0	0	0	0.36848	1	18541	18541		15.248	3.0078	1	754370	+		24713	12567	16361	16521	33299	33299					-0.09698234599181887
YFQISPCDEF	10	Unmodified	_YFQISPCDEF_					0	0	0			REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF	REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.7673950195312	2	624.765714	1247.51688	0.33467	0.00020909	2.6367	0.0016473	2.9713	0.0018564	624.7672757731574	77.117	0.48521	77.152	76.789	77.275	0.034485					53	18	5	0	0	0	0.32016	2	18387	18387;18435		20.415	3.3016	1	731100	+		24714	12567	16361	16521	33300;33301	33300					-0.09698234599181887
YFQISPCDEF	10	Unmodified	_YFQISPCDEF_					0	0	0			REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF	REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	624.765714	1247.51688	0.33467	0.00020909	2.6367	0.0016473	2.9713	0.0018564	624.7672757731574	77.117	0.48521	77.152	76.789	77.275	0.034485	0.021688	-0.00026498	NaN	20.415	53	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	731100	+		24715	12567	16361	16521							-0.09698234599181887
YFQKLQSLL	9	Unmodified	_YFQKLQSLL_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.751220703125	2	570.326599	1138.63865	0.43196	0.00024636	-0.47147	-0.00026889	-0.039515	-2.2537E-05	570.3263611680078	70.918	0.31111	70.918	70.763	71.074	0					18	10	2	0	0	0	0.25051	1	16660	16660		7.9102	1.187	1	110380	+		24716	7790	16362	16522	33302	33302					0.07487175545543323
YFQNTQGLIF	10	Unmodified	_YFQNTQGLIF_					0	0	0		ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000605447.1_1_9:136944076-136944538:+|nuORF	ENST00000605447.1_1_9:136944076-136944538:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	616.298583984375	2	615.811313	1229.60807	-0.19851	-0.00012224	0.80967	0.00049861	0.61117	0.00037636	615.81147381562	78.051	0.70676	78.051	77.772	78.479	0					53	23	4	0	0	0	0.051426	1	18874	18874		57.249	11.228	1	436120			24717	4282	16363	16523	33303	33303					0.002453971604609251
YFQNTQGLIF	10	Unmodified	_YFQNTQGLIF_					0	0	0		ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000605447.1_1_9:136944076-136944538:+|nuORF	ENST00000605447.1_1_9:136944076-136944538:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	615.8111572265625	2	615.811313	1229.60807	0.042644	2.6261E-05	0.52192	0.00032141	0.56457	0.00034767	615.8113404873884	78.008	0.58247	78.042	77.822	78.405	0.034485					43	19	4	0	0	0	0.012609	1	18707	18707		74.2	34.25	1	485620			24718	4282	16363	16523	33304	33304					0.002453971604609251
YFRDYFPI	8	Unmodified	_YFRDYFPI_					0	0	0		nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2	nc|ENSG00000062282|Q96PD7-2|DGAT2	nc|ENSG00000062282|Q96PD7-2|DGAT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7761840820312	2	560.776742	1119.53893	0.12684	7.113E-05	-0.46092	-0.00025847	-0.33408	-0.00018735	560.7763631228696	44.378	0.86004	44.467	43.901	44.761	0.088921					46	29	2	0	0	0	0.53494	1	8491	8491		4.756	0	1	64412			24719	654	16364	16524	33305	33305					-0.01605642068443558
YFRELPDPL	9	Unmodified	_YFRELPDPL_					0	0	0		nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30;ENST00000461003.5_1_1:161022982-161039420:-|nuORF;nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7652587890625	2	575.300581	1148.58661	0.42007	0.00024167	-0.18472	-0.00010627	0.23535	0.00013539	575.3006099229577	57.796	0.3447	57.796	57.623	57.968	0					23	11	3	0	0	0	0.25051	1	12654	12654		7.9102	1.7044	1	126630			24720	5084	16365	16525	33306	33306					0.018260121317553057
YFRELPDPL	9	Unmodified	_YFRELPDPL_					0	0	0		nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30;ENST00000461003.5_1_1:161022982-161039420:-|nuORF;nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	575.300581	1148.58661	0.32126	0.00018482	0.45372	0.00026102	0.77498	0.00044585	575.3007957317627	57.727	0.33099	57.796	57.639	57.97	0.068375	0.0001019	0.00036169	NaN	7.9102	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145800			24721	5084	16365	16525							0.018260121317553057
YFREVYGTL	9	Unmodified	_YFREVYGTL_					0	0	0		tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.29150390625	2	574.292756	1146.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.423	1	45.423	44.923	45.923	0								0	0	0	0.28527	1	8930	8930		2.0598	0	1				24722	13509	16366	16526	33307	33307					0.003537256147183143
YFRNHETT	8	Unmodified	_YFRNHETT_					0	0	0		nc|ENSG00000197044|Q8N8Z8-2|ZNF441;ENSG00000197044|ENST00000357901|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.802001953125	2	534.24888	1066.48321	0.73931	0.00039498	-1.4051	-0.00075065	-0.66574	-0.00035567	534.2483459125251	65.847	0.15009	65.914	65.788	65.939	0.066872					7	5	2	0	0	0	0.3576	1	14972	14972		5.7604	0	1	65764			24723	5266	16367	16527	33308	33308					-0.04737475256069956
YFRQMEAL	8	Unmodified	_YFRQMEAL_					0	0	0			REV__MMP15|p.R120Qfs*2|1|0.42|ENSG00000102996|chr16:58038313-58038313|G/-|frameshift_variant	REV__MMP15|p.R120Qfs*2|1|0.42|ENSG00000102996|chr16:58038313-58038313|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7506713867188	2	529.260402	1056.50625	0.174	9.2089E-05	2.8511	0.001509	3.0251	0.0016011	529.766722397566	51.601	0.86655	51.601	51.295	52.162	0					79	29	4	0	0	0	0.50159	1	10951	10951		12.532	2.4576	1	356340	+		24724	8465	16368	16528	33309	33309					-0.019741724629511737
YFRSTYKEPQ	10	Unmodified	_YFRSTYKEPQ_					0	0	0			REV__ENSG00000183783|ENST00000360029|KCTD8	REV__ENSG00000183783|ENST00000360029|KCTD8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.2196350097656	3	440.21906	1317.63535	0.024536	1.0801E-05	0.14575	6.4163E-05	0.17029	7.4965E-05	440.21907864529584	91.064	0.9473	91.1	90.745	91.692	0.035446					44	34	2	0	0	0	0.47119	1	22702	22702		0.77653	0	1	100470	+		24725	10611	16369	16529	33310	33310					-0.010761192991367352
YFSEVWLF	8	Unmodified	_YFSEVWLF_					0	0	0			REV__ENST00000482528.1_1_2:238434384-238436234:+|nuORF	REV__ENST00000482528.1_1_2:238434384-238436234:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.3267211914062	2	545.765843	1089.51713	0.25661	0.00014005	-1.4272	-0.00077894	-1.1706	-0.0006389	545.7649264132143	56.834	1.2562	56.834	56.512	57.768	0					68	45	2	0	0	0	0.33613	1	12382	12382		28.173	1.832	1	150340	+		24726	12101	16370	16530	33311	33311					-0.02404446817013195
YFSFDYTF	8	Unmodified	_YFSFDYTF_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B	REV__nc|ENSG00000089177|Q96L93-6|KIF16B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7876586914062	2	545.231833	1088.44911	0.36698	0.00020009	3.0733	0.0016756	3.4403	0.0018757	545.2333709491569	56.889	0.30154	56.956	56.764	57.066	0.066452					15	10	2	0	0	0	0.34775	1	12252	12252		14.582	3.4672	1	59841	+		24727	8294	16371	16531	33312	33312					-0.09157316467667442
YFSMFLHI	8	Unmodified	_YFSMFLHI_					0	0	0		nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2637939453125	2	529.262413	1056.51027	0.22923	0.00012132	1.1383	0.00060244	1.3675	0.00072377	529.2628860383186	49.765	0.52992	49.838	49.622	50.152	0.07312					43	18	3	0	0	0	0.52502	1	10182	10182		9.3474	1.4373	1	393590			24728	2619	16372	16532	33313	33313					-0.01572082969209987
YFSYYFTEWYL	11	Unmodified	_YFSYYFTEWYL_					0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|6	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.9027099609375	3	527.902738	1580.68638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.804	1	96.844	96.344	97.344	0.039772								0	0	0	0.34185	1	24419	24419		0.094841	0	1		+		24729	7815	16373	16533	33314	33314					-0.08073215044964854
YFTKIRKAL	9	Unmodified	_YFTKIRKAL_					0	0	0			REV__nc|ENSG00000182333|P07098-2|LIPF	REV__nc|ENSG00000182333|P07098-2|LIPF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.3513793945312	2	570.350409	1138.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.109	1	69.171	68.671	69.671	0.062126								0	0	0	0.28409	1	15981	15981		2.3027	0	1		+		24730	10560	16374	16534	33315	33315					0.12246874536390351
YFTSNSWVW	9	Unmodified	_YFTSNSWVW_					0	0	0		ENST00000427163.1_1_13:90823702-90823903:+|nuORF;ENSG00000197601|ENST00000354817|FAR1	ENST00000427163.1_1_13:90823702-90823903:+|nuORF	ENST00000427163.1_1_13:90823702-90823903:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2677612304688	2	595.269281	1188.52401	0.40476	0.00024094	-1.6032	-0.00095432	-1.1984	-0.00071338	595.2678053468364	83.344	0.92559	83.344	82.823	83.749	0					54	31	3	0	0	0	0.11547	2	20461	20461;20480		29.082	2.1979	1	180450			24731	5307	16375	16535	33316;33317	33316					-0.06271133936434126
YFTSNSWVW	9	Unmodified	_YFTSNSWVW_					0	0	0		ENST00000427163.1_1_13:90823702-90823903:+|nuORF;ENSG00000197601|ENST00000354817|FAR1	ENST00000427163.1_1_13:90823702-90823903:+|nuORF	ENST00000427163.1_1_13:90823702-90823903:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.2688598632812	2	595.269281	1188.52401	0.14812	8.8174E-05	-1.5843	-0.00094308	-1.4362	-0.0008549	595.2680003209724	83.323	0.81654	83.345	82.851	83.668	0.021744					54	28	3	0	0	0	0.10833	1	20344	20344		30.637	10.183	1	205630			24732	5307	16375	16535	33318	33318					-0.06271133936434126
YFTTKSYIF	9	Unmodified	_YFTTKSYIF_					0	0	0		ENSG00000160131|ENST00000330374|VMA21;nc|ENSG00000160131|Q3ZAQ7-2|VMA21	ENSG00000160131|ENST00000330374|VMA21	ENSG00000160131|ENST00000330374|VMA21	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2742309570312	2	585.297507	1168.58046	0.58286	0.00034114	1.098	0.00064267	1.6809	0.00098381	585.2985886097381	61.177	0.41776	61.177	60.971	61.389	0					18	14	2	0	0	0	0.23598	1	13729	13729		15.847	6.4997	1	94077			24733	3748	16376	16536	33319	33319					0.002914939002266692
YFTTKSYIF	9	Unmodified	_YFTTKSYIF_					0	0	0		ENSG00000160131|ENST00000330374|VMA21;nc|ENSG00000160131|Q3ZAQ7-2|VMA21	ENSG00000160131|ENST00000330374|VMA21	ENSG00000160131|ENST00000330374|VMA21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.297607421875	2	585.297507	1168.58046	0.61547	0.00036023	1.6424	0.00096127	2.2578	0.0013215	585.8008527522763	61.113	0.36109	61.186	61.027	61.388	0.073418					17	11	2	0	0	0	0.19398	1	13538	13538		19.257	3.4098	1	132060			24734	3748	16376	16536	33320	33320					0.002914939002266692
YFTVTCYS	8	Unmodified	_YFTVTCYS_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.212646484375	2	492.212586	982.410619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.057	1	46.143	45.643	46.643	0.085617								0	0	0	0.38822	1	8994	8994		2.8892	0	1				24735	4301	16377	16537	33321	33321					-0.08128945373846364
YFVAVFNSW	9	Unmodified	_YFVAVFNSW_					0	0	0		ENST00000447467.6_1_7:95726813-95727326:+|nuORF	ENST00000447467.6_1_7:95726813-95727326:+|nuORF	ENST00000447467.6_1_7:95726813-95727326:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2791137695312	2	566.776742	1131.53893	0.37593	0.00021307	-1.9801	-0.0011223	-1.6042	-0.00090921	566.7745624487151	75.126	1.2517	75.126	74.4	75.652	0					88	47	2	0	0	0	0.14091	1	17954	17954		25.399	0.72543	1	259120			24736	6550	16378	16538	33322	33322					-0.021576420684368713
YFVAVFNSW	9	Unmodified	_YFVAVFNSW_					0	0	0		ENST00000447467.6_1_7:95726813-95727326:+|nuORF	ENST00000447467.6_1_7:95726813-95727326:+|nuORF	ENST00000447467.6_1_7:95726813-95727326:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7744750976562	2	566.776742	1131.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.24	1	102.24	101.74	102.74	0								0	0	0	0.2428	1	26227	26227		10.824	1.4408	1				24737	6550	16378	16538	33323	33323					-0.021576420684368713
YFVIQPFSPLA	11	Unmodified	_YFVIQPFSPLA_					0	0	0		nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89	nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-2|C6orf89	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.8500366210938	2	641.347532	1280.68051	-0.090663	-5.8146E-05	0.43823	0.00028105	0.34756	0.00022291	641.3476525960381	72.22	0.77988	72.22	72.019	72.799	0					71	26	4	0	0	0	0.38315	1	17238	17238		8.1555	0	1	669500			24738	5386	16379	16539	33324	33324					0.051397312340441204
YFVIQPFSPLA	11	Unmodified	_YFVIQPFSPLA_					0	0	0		nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89	nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-2|C6orf89	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.8513793945312	2	641.347532	1280.68051	0.067764	4.346E-05	0.51733	0.00033179	0.58509	0.00037525	641.3475840039741	72.151	0.88943	72.207	71.95	72.84	0.055939					86	30	4	0	0	0	0.35043	2	17026	17026;17038		12.241	0	1	594070			24739	5386	16379	16539	33325;33326	33325					0.051397312340441204
YFVKCFLL	8	Unmodified	_YFVKCFLL_					0	0	0			REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|86	REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|86	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	516.76611328125	2	516.782982	1031.55141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.834	1	83.834	83.334	84.334	0								0	0	0	0.38822	1	20630	20630		2.8892	0	1		+		24740	7805	16380	16540	33327	33327					0.03689678070259106
YFVRLVEHVF	10	Unmodified	_YFVRLVEHVF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	436.9078674316406	3	436.908157	1307.70264	0.13323	5.821E-05	-0.47989	-0.00020967	-0.34666	-0.00015146	436.90768295395253	68.858	0.17471	68.92	68.793	68.968	0.062126					11	6	2	0	0	0	0.46608	1	15905	15905		1.7423	0	1	37133	+		24741	10359	16381	16541	33328	33328					0.061099557024363094
YFVRVFHE	8	Unmodified	_YFVRVFHE_					0	0	0			REV__tr|U7T6L2|U7T6L2_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00284PE=4SV=1	REV__tr|U7T6L2|U7T6L2_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00284PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7817993164062	2	548.782359	1095.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.948	1	98.99	98.49	99.49	0.041931								0	0	0	0.38822	1	25072	25072		0.69038	0.088878	1		+		24742	13314	16382	16542	33329	33329					0.006211800257005962
YFVYSQVVFSG	11	Unmodified	_YFVYSQVVFSG_					0	0	0		ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.3194580078125	2	648.318971	1294.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.838	1	54.838	54.338	55.338	0								0	0	0	0.31899	1	11788	11788		8.1555	0.8663	1				24743	5609	16383	16543	33330	33330					-0.012137360423366772
YFWGWLNAVF	10	Unmodified	_YFWGWLNAVF_					0	0	0		nc|ENSG00000125375|Q99766-3|DMAC2L;nc|ENSG00000125375|Q99766-2|DMAC2L;ENST00000557421.5_1_14:50779073-50792346:+|nuORF;ENST00000555939.5_1_14:50779073-50791268:+|nuORF;ENSG00000125375|ENST00000557421|DMAC2L;ENST00000554438.5_1_14:50779073-50792438:+|nuORF	nc|ENSG00000125375|Q99766-3|DMAC2L	nc|ENSG00000125375|Q99766-3|DMAC2L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	434.8821716308594	3	434.88172	1301.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.514	1	65.581	65.081	66.081	0.066872								0	0	0	0.3384	1	14896	14896		2.086	0	1				24744	2289	16384	16544	33331	33331					-0.015416912516911907
YFWHPEVPE	9	Unmodified	_YFWHPEVPE_					0	0	0			REV__SEC23IP|p.Q270E|1|0.06|ENSG00000107651|chr10:119902910-119902910|C/G|missense_variant	REV__SEC23IP|p.Q270E|1|0.06|ENSG00000107651|chr10:119902910-119902910|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2772827148438	2	602.277106	1202.53966	0.48775	0.00029376	1.145	0.00068959	1.6327	0.00098335	602.2776472241063	37.847	0.37148	37.932	37.744	38.116	0.084476					21	12	3	0	0	0	0.25989	1	6569	6569		0.52476	0	1	34765	+		24745	12983	16385	16545	33332	33332					-0.0535084741936771
YFWRAYDQC	9	Unmodified	_YFWRAYDQC_					0	0	0		ENSG00000173250|ENST00000311104|GPR151	ENSG00000173250|ENST00000311104|GPR151	ENSG00000173250|ENST00000311104|GPR151	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.2651977539062	2	626.266216	1250.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.303	1	17.387	16.887	17.887	0.083696								0	0	0	0.29233	1	827	827		0.6015	0	1				24746	4538	16386	16546	33333	33333					-0.09735975439593858
YFWWLLLPV	9	Unmodified	_YFWWLLLPV_					0	0	0		ENSG00000141469|ENST00000321925|SLC14A1;nc|ENSG00000141469|Q13336-2|SLC14A1	ENSG00000141469|ENST00000321925|SLC14A1	ENSG00000141469|ENST00000321925|SLC14A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.8429565429688	2	618.844428	1235.6743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.793	1	31.867	31.367	32.367	0.073782								0	0	0	0.29233	1	4707	4707		0.6015	0.076735	1				24747	3061	16387	16547	33334	33334					0.06589257793166325
YFYPFPVPPL	10	Unmodified	_YFYPFPVPPL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3264770507812	2	620.326068	1238.63758	-0.0068239	-4.233E-06	0.0052255	3.2415E-06	-0.0015984	-9.9154E-07	620.326221819635	100.59	0.51271	100.59	100.38	100.89	0					38	29	2	0	0	0	0.34148	4	25718	25690;25707;25718;25763		18.135	16.075	1	42845			24748	2247	16388	16548	33335;33336;33337;33338	33337					0.027809611766087983
YFYPFPVPPL	10	Unmodified	_YFYPFPVPPL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3255615234375	2	620.326068	1238.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.52	1	100.57	100.07	101.07	0.042839								0	0	0	0.32946	1	25551	25551		12.532	10.472	1				24749	2247	16388	16548	33339	33339					0.027809611766087983
YFYPFPVPPL	10	Unmodified	_YFYPFPVPPL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3267211914062	2	620.326068	1238.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.75	1	100.79	100.29	101.29	0.042839								0	0	0	0.32946	1	25621	25621		12.532	10.472	1				24750	2247	16388	16548	33340	33340					0.027809611766087983
YFYTPETWS	9	Unmodified	_YFYTPETWS_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.2584838867188	2	597.261122	1192.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.299	1	73.351	72.851	73.851	0.052574								0	0	0	0.25692	1	17258	17258		7.9102	0.62092	1		+		24751	10239	16389	16549	33341	33341					-0.08086259893184433
YGAALLRAWL	10	Unmodified	_YGAALLRAWL_					0	0	0		nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5	nc|ENSG00000140691|Q96C12-3|ARMC5	nc|ENSG00000140691|Q96C12-3|ARMC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.2774658203125	2	567.326934	1132.63931	0.47462	0.00026926	-2.754	-0.0015624	-2.2794	-0.0012931	567.3253561427522	99.249	0.17065	99.292	99.225	99.396	0.042831					13	9	2	0	0	0	0.31667	1	25189	25189		7.9102	3.5809	1	53254			24752	3028	16390	16550	33342	33342					0.07830014985211164
YGADISGSLF	10	Unmodified	_YGADISGSLF_					0	0	0		ENSG00000186280|ENST00000335080|KDM4D;ENSG00000235268|ENST00000450979|KDM4E;ENSG00000255855|ENST00000545950|KDM4F	ENSG00000186280|ENST00000335080|KDM4D	ENSG00000186280|ENST00000335080|KDM4D	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.2490844726562	2	515.248015	1028.48148	0.49267	0.00025385	3.1038	0.0015992	3.5964	0.0018531	515.2493400697992	88.433	0.37333	88.433	88.232	88.605	0					24	13	3	0	0	0	0.37232	1	22039	22039		14.838	4.0143	1	142100			24753	5073	16391	16551	33343	33343					-0.03162529064661612
YGAFLVTNF	9	Unmodified	_YGAFLVTNF_					0	0	0		ENST00000416764.5_1_3:185686359-185693154:+|nuORF;ENST00000306399.3_1_3:185686359-185697623:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.26318359375	2	516.263468	1030.51238	0.3421	0.00017661	-0.76143	-0.0003931	-0.41933	-0.00021649	516.2628598352242	82.551	0.61197	82.573	82.319	82.931	0.021744					46	21	3	0	0	0	0.22344	1	20036	20036		15.847	0	1	345130			24754	5985	16392	16552	33344	33344					-0.0016533095977138146
YGCNAKWL	8	Unmodified	_YGCNAKWL_					0	0	0			REV__chr2:20205424-20213157|177|53.69|0.75|6.16|-|2|SDC1,None|1	REV__chr2:20205424-20213157|177|53.69|0.75|6.16|-|2|SDC1,None|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	477.729248046875	2	477.728738	953.442923	0.25706	0.00012281	-0.71021	-0.00033929	-0.45315	-0.00021648	477.72849391960335	87.93	0.44469	87.93	87.736	88.181	0					18	15	2	0	0	0	0.54081	1	21877	21877		0.79363	0	1	271070	+		24755	7799	16393	16553	33345	33345					-0.035661131801930424
YGCNAKWL	8	Unmodified	_YGCNAKWL_					0	0	0			REV__chr2:20205424-20213157|177|53.69|0.75|6.16|-|2|SDC1,None|1	REV__chr2:20205424-20213157|177|53.69|0.75|6.16|-|2|SDC1,None|1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.7286682128906	2	477.728738	953.442923	0.017221	8.2269E-06	-0.61449	-0.00029356	-0.59727	-0.00028533	477.72845939802767	87.891	0.73206	87.921	87.653	88.385	0.030037					35	25	2	0	0	0	0.54081	1	21698	21698		0.79363	0	1	180180	+		24756	7799	16393	16553	33346	33346					-0.035661131801930424
YGCNAKWL	8	Unmodified	_YGCNAKWL_					0	0	0			REV__chr2:20205424-20213157|177|53.69|0.75|6.16|-|2|SDC1,None|1	REV__chr2:20205424-20213157|177|53.69|0.75|6.16|-|2|SDC1,None|1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	477.728738	953.442923	0.017221	8.2269E-06	-0.61449	-0.00029356	-0.59727	-0.00028533	477.72845939802767	87.891	0.73206	87.921	87.653	88.385	0.030037	-0.0047681	6.1843E-05	NaN	0.79363	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180180	+		24757	7799	16393	16553							-0.035661131801930424
YGEYRMETF	9	Unmodified	_YGEYRMETF_					0	0	0			REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2431640625	2	598.258056	1194.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.596	1	56.596	56.096	57.096	0								0	0	0	0.15116	1	12325	12325		25.399	9.5521	1		+		24758	13106	16394	16554	33347	33347					-0.08791101396377599
YGEYRMETF	9	Unmodified	_YGEYRMETF_					0	0	0			REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2435302734375	2	598.258056	1194.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.852	1	56.852	56.352	57.352	0								0	0	0	0.19239	1	12403	12403		19.257	4.4187	1		+		24759	13106	16394	16554	33348	33348					-0.08791101396377599
YGEYRMETF	9	Unmodified	_YGEYRMETF_					0	0	0			REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2435913085938	2	598.258056	1194.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.641	1	57.641	57.141	58.141	0								0	0	0	0.19239	1	12643	12643		19.257	3.4098	1		+		24760	13106	16394	16554	33349	33349					-0.08791101396377599
YGEYRMETF	9	Unmodified	_YGEYRMETF_					0	0	0			REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.244140625	2	598.258056	1194.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.28	1	59.28	58.78	59.78	0								0	0	0	0.22786	1	13136	13136		13.906	7.1829	1		+		24761	13106	16394	16554	33350	33350					-0.08791101396377599
YGFRLGFLHSG	11	Unmodified	_YGFRLGFLHSG_					0	0	0		TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant;TP53|p.I195Lfs*53|1|0.3|ENSG00000141510|chr17:7674949-7674950|-/AG|frameshift_variant;TP53|p.C176Afs*71|1|0.09|ENSG00000141510|chr17:7675086-7675086|A/-|frameshift_variant;TP53|p.G199Efs*48|1|0.77|ENSG00000141510|chr17:7674937-7674937|T/-|frameshift_variant;TP53|p.H178Tfs*69|1|0.53|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.N200Ifs*47|1|0.17|ENSG00000141510|chr17:7674932-7674932|T/-|frameshift_variant;TP53|p.D184Afs*62|1|0.68|ENSG00000141510|chr17:7675058-7675061|CTAT/-|frameshift_variant;TP53|p.V173Afs*72|1|0.09|ENSG00000141510|chr17:7675088-7675094|CGCCTCA/-|frameshift_variant;TP53|p.P191Qfs*51|1|0.69|ENSG00000141510|chr17:7674944-7674959|CGGATAAGATGCTGAG/-|frameshift_variant;TP53|p.V197Ifs*42|1|0.6|ENSG00000141510|chr17:7674919-7674943|CTCCACACGCAAATTTCCTTCCACT/-|frameshift_variant;TP53|p.L206Wfs*41|1|0.36|ENSG00000141510|chr17:7674914-7674914|A/-|frameshift_variant;TP53|p.V203Gfs*44|1|0.68|ENSG00000141510|chr17:7674923-7674923|A/-|frameshift_variant;TP53|p.T118Qfs*5|1|0.66|ENSG00000141510|chr17:7676018-7676018|C/-|frameshift_variant;TP53|p.K139Cfs*6|1|0.83|ENSG00000141510|chr17:7675187-7675197|GGGCAGGTCTT/-|frameshift_variant;TP53|p.R156Hfs*26|1|0.2|ENSG00000141510|chr17:7675145-7675146|-/GGGT|frameshift_variant;TP53|p.H178Pfs*3|1|0.13|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.P151Rfs*27|1|0.6|ENSG00000141510|chr17:7675153-7675160|GGGCGGGG/-|frameshift_variant;TP53|p.C135Afs*35|1|0.73|ENSG00000141510|chr17:7675209-7675209|A/-|frameshift_variant;TP53|p.M169*|1|0.06|ENSG00000141510|chr17:7675107-7675107|T/-|frameshift_variant;TP53|p.P128Lfs*42|1|0.97|ENSG00000141510|chr17:7675229-7675229|G/-|frameshift_variant;TP53|p.G154Afs*16|2|0.45|ENSG00000141510|chr17:7675156-7675156|C/-|frameshift_variant;TP53|p.L137Pfs*32|1|0.55|ENSG00000141510|chr17:7675201-7675204|CAGT/-|frameshift_variant;TP53|p.K139Pfs*19|1|0.58|ENSG00000141510|chr17:7675161-7675197|GTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTT/-|frameshift_variant;TP53|p.W146Vfs*3|1|0.39|ENSG00000141510|chr17:7675177-7675178|-/A|frameshift_variant;TP53|p.R209Kfs*6|1|0.17|ENSG00000141510|chr17:7674904-7674905|TC/-|frameshift_variant;ENSG00000141510|ENST00000269305|TP53;TP53|p.D281Efs*26|1|0.76|ENSG00000141510|chr17:7673777-7673778|-/TCTC|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;TP53|p.S260Pfs*95|1|0.61|ENSG00000141510|chr17:7674185-7674186|-/GTCTTCCAGTGTGATGATGGTGAGGATGG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R290Sfs*56|1|0.38|ENSG00000141510|chr17:7673752-7673753|-/GA|frameshift_variant;TP53|p.S260Pfs*85|1|0.33|ENSG00000141510|chr17:7674185-7674185|A/-|frameshift_variant;TP53|p.R342Efs*3|1|0.39|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.L330Ffs*15|1|0.28|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant;TP53|p.E294Sfs*51|1|0.57|ENSG00000141510|chr17:7673744-7673744|T/-|frameshift_variant;TP53|p.H297Pfs*48|1|0.47|ENSG00000141510|chr17:7673730-7673730|T/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.K320Nfs*19|1|0.21|ENSG00000141510|chr17:7673550-7673568|TTCTCCATCCAGTGGTTTC/-|frameshift_variant;TP53|p.T329Hfs*8|2|0.79|ENSG00000141510|chr17:7673544-7673545|-/A|frameshift_variant;TP53|p.Q317Pfs*20|1|0.41|ENSG00000141510|chr17:7673578-7673579|-/G|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.T256Hfs*8|1|0.39|ENSG00000141510|chr17:7674198-7674199|-/A|frameshift_variant;TP53|p.P250Hfs*13|1|0.5|ENSG00000141510|chr17:7674213-7674214|GG/-|frameshift_variant;TP53|p.S240Gfs*20|1|0.18|ENSG00000141510|chr17:7674236-7674246|TGCAGGAACTG/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H214Qfs*33|1|0.55|ENSG00000141510|chr17:7674889-7674889|A/-|frameshift_variant;TP53|p.C238Lfs*9|1|0.33|ENSG00000141510|chr17:7674250-7674250|C/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.38|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.P223Afs*3|1|0.3|ENSG00000141510|chr17:7674865-7674866|-/GGCT|frameshift_variant;TP53|p.E224*|1|0.31|ENSG00000141510|chr17:7674862-7674863|-/T|frameshift_variant;TP53|p.S215Kfs*7|1|0.43|ENSG00000141510|chr17:7674887-7674888|-/T|frameshift_variant;TP53|p.P219Lfs*2|1|0.53|ENSG00000141510|chr17:7674874-7674875|GG/-|frameshift_variant	TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant;ENSG00000141510|ENST00000269305|TP53	TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	419.2312927246094	3	418.552374	1252.63529	0.37771	0.00015809	2.5086	0.00105	2.8863	0.0012081	418.55333919001623	49.871	0.37151	49.871	49.679	50.05	0					20	12	2	0	0	0	0.31097	1	10267	10267		1.3296	0.11481	1	55726			24762	13438;3063	16395	16555	33351	33351					0.019079254915141064
YGFYGDII	8	Unmodified	_YGFYGDII_					0	0	0		nc|ENSG00000100422|Q8TCT0-2|CERK;ENSG00000100422|ENST00000216264|CERK	nc|ENSG00000100422|Q8TCT0-2|CERK	nc|ENSG00000100422|Q8TCT0-2|CERK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	474.2286071777344	2	474.229094	946.443634	0.0756	3.5852E-05	-1.1096	-0.00052621	-1.034	-0.00049036	474.22856089235734	47.911	0.60892	47.911	47.583	48.192	0					38	20	2	0	0	0	0.49441	2	9657	9657;9705		13.508	1.8676	1	128070			24763	1198	16396	16556	33352;33353	33352					-0.031729952594673705
YGFYGDII	8	Unmodified	_YGFYGDII_					0	0	0		nc|ENSG00000100422|Q8TCT0-2|CERK;ENSG00000100422|ENST00000216264|CERK	nc|ENSG00000100422|Q8TCT0-2|CERK	nc|ENSG00000100422|Q8TCT0-2|CERK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	474.22802734375	2	474.229094	946.443634	0.25095	0.00011901	-1.3421	-0.00063647	-1.0912	-0.00051746	474.22839335527215	47.83	0.61127	47.91	47.574	48.185	0.080029					40	23	2	0	0	0	0.52502	2	9537	9537;9566		9.3474	1.4373	1	90258			24764	1198	16396	16556	33354;33355	33354					-0.031729952594673705
YGGCLPFS	8	Unmodified	_YGGCLPFS_					0	0	0			REV__ENST00000394156.7_2_16:64981508-64982584:-|nuORF	REV__ENST00000394156.7_2_16:64981508-64982584:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.1886901855469	2	422.188914	842.363275	0.12999	5.488E-05	-0.3171	-0.00013388	-0.18711	-7.8995E-05	422.1887015804562	95.692	0.64025	95.731	95.634	96.274	0.038872					54	30	2	0	0	0	0.54081	1	24134	24134		0.79363	0	1	632240	+		24765	11712	16397	16557	33356	33356					-0.06421179854169168
YGGETNSCGYN	11	Unmodified	_YGGETNSCGYN_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.7164306640625	2	582.716753	1163.41895	0.03393	1.9771E-05	0.16191	9.4349E-05	0.19584	0.00011412	582.7168275943013	31.307	0.35953	31.307	31.133	31.492	0					27	17	2	0	0	0	0.41892	2	4659	4659;4729		0	0	1	18128	+		24766	9330	16398	16558	33357;33358	33357					-0.15622043195139668
YGGETNSCGYN	11	Unmodified	_YGGETNSCGYN_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	582.716753	1163.41895	0.18204	0.00010608	0.43279	0.0002522	0.61484	0.00035828	582.7168386565493	31.246	0.2936	31.32	31.148	31.441	0.073782	0.0061893	0.00016798	NaN	0	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13360	+		24767	9330	16398	16558							-0.15622043195139668
YGGFPFPL	8	Unmodified	_YGGFPFPL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	449.8859558105469	2	449.228897	896.44324	-0.35295	-0.00015855	-1.1982	-0.00053828	-1.5512	-0.00069683	449.22820069120496	40.918	0.54831	41.008	40.717	41.265	0.089645					25	21	2	0	0	0	0.3576	1	7436	7436		0.79363	0	1	20063			24768	979	16399	16559	33359	33359					-0.00912370188677869
YGGFPFPL	8	Unmodified	_YGGFPFPL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	449.228897	896.44324	-0.29676	-0.00013331	-1.8259	-0.00082023	-2.1226	-0.00095354	449.22807660526104	41.063	0.60575	41.063	40.881	41.487	0	0.027609	-0.00022205	NaN	0.79363	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27440			24769	979	16399	16559							-0.00912370188677869
YGHLELIQL	9	Unmodified	_YGHLELIQL_					0	0	0		nc|ENSG00000169919|P08236-3|GUSB;ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-3|GUSB	nc|ENSG00000169919|P08236-3|GUSB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.3033447265625	2	543.303124	1084.5917	0.44852	0.00024368	-0.0022998	-1.2495E-06	0.44622	0.00024243	543.3030264433133	67.64	1.5398	67.64	67.348	68.888	0					156	57	4	0	0	0	0.0042692	4	15705	15662;15705;15747;15791		99.799	31.718	1	3006100			24770	4366	16400	16560	33360;33361;33362;33363	33361					0.052783159944056024
YGHLELIQL	9	Unmodified	_YGHLELIQL_					0	0	0		nc|ENSG00000169919|P08236-3|GUSB;ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-3|GUSB	nc|ENSG00000169919|P08236-3|GUSB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.3032836914062	2	543.303124	1084.5917	0.68243	0.00037077	-0.25527	-0.00013869	0.42716	0.00023208	543.3028986570922	67.607	1.4999	67.67	67.377	68.876	0.063507					139	54	4	0	0	0	0.0027323	5	15503	15489;15503;15551;15594;15639		111.29	29.397	1	2982500			24771	4366	16400	16560	33364;33365;33366;33367;33368	33365					0.052783159944056024
YGHPGYPAL	9	Unmodified	_YGHPGYPAL_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.24237060546875	2	487.74016	973.465767	-0.282	-0.00013754	0.63959	0.00031195	0.35759	0.00017441	487.73973672837184	29.535	1.8784	29.535	28.991	30.869	0					153	100	2	0	0	0	0.31136	2	4140	4140;4184		5.2307	0.90143	1	47714			24772	1690	16401	16561	33369;33370	33369					-0.02202770791052444
YGHPGYPAL	9	Unmodified	_YGHPGYPAL_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7396545410156	2	487.74016	973.465767	-0.27888	-0.00013602	0.52153	0.00025437	0.24265	0.00011835	487.7398060686531	27.668	0.82074	27.75	27.556	28.376	0.082134					82	52	2	0	0	0	0.31136	1	3502	3502		5.2307	0.90143	1	60830			24773	1690	16401	16561	33371	33371					-0.02202770791052444
YGHPGYPAL	9	Unmodified	_YGHPGYPAL_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7398376464844	2	487.74016	973.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.315	1	29.393	28.893	29.893	0.078287								0	0	0	0.2699	1	3972	3972		5.2307	0	1				24774	1690	16401	16561	33372	33372					-0.02202770791052444
YGHPGYPAL	9	Unmodified	_YGHPGYPAL_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	487.7391662597656	2	487.74016	973.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.467	1	29.545	29.045	30.045	0.078287								0	0	0	0.2699	1	4017	4017		5.2307	0.90143	1				24775	1690	16401	16561	33373	33373					-0.02202770791052444
YGIEKVFKE	9	Unmodified	_YGIEKVFKE_					0	0	0			REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.80224609375	2	556.802957	1111.59136	0.31822	0.00017719	-0.27545	-0.00015337	0.042768	2.3813E-05	556.8026902014916	51.109	0.4636	51.109	50.922	51.386	0					36	15	3	0	0	0	0.27929	1	10707	10707		9.3831	0	1	256630	+		24776	13231	16402	16562	33374	33374					0.040028962745282115
YGIIFACGCSF	11	Unmodified	_YGIIFACGCSF_					0	0	0		ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10;SLC16A10|p.I205Cfs*15|1|0.08|ENSG00000112394|chr6:111177336-111177355|ATTGTCACTGCTGGCAGCAG/-|frameshift_variant	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.762451171875	2	590.76192	1179.50929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.442	1	93.442	92.942	93.942	0								0	0	0	0.33281	1	23551	23551		3.2813	0.54611	1				24777	1757	16403	16563	33375	33375					-0.07328665400450518
YGKNITTTV	9	Unmodified	_YGKNITTTV_					0	0	0		tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.7728271484375	2	498.771657	995.528761	0.58306	0.00029081	0.30946	0.00015435	0.89252	0.00044516	498.7717325093774	67.377	1.0021	67.377	67.068	68.07	0					78	38	3	0	0	0	0.031665	1	15682	15682		49.933	2.1843	1	1024400			24778	13523	16404	16564	33376	33376					0.030817502063086977
YGKPYGTGPLF	11	Unmodified	_YGKPYGTGPLF_					0	0	0			REV__nc|ENSG00000272578|Q6P575|GUSBP11	REV__nc|ENSG00000272578|Q6P575|GUSBP11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3342895507812	2	600.308406	1198.60226	0.5734	0.00034422	-0.98312	-0.00059017	-0.40972	-0.00024596	600.3082318713098	88.102	0.15795	88.102	87.981	88.139	0					9	5	2	0	0	0	0.30991	1	21907	21907		10.8	2.644	1	49456	+		24779	12910	16405	16565	33377	33377					0.010902986487963062
YGLEKFWAF	9	Unmodified	_YGLEKFWAF_					0	0	0		nc|ENSG00000155506|Q6PKG0-3|LARP1;ENSG00000155506|ENST00000518297|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7926635742188	2	580.792392	1159.57023	0.3936	0.0002286	-0.14021	-8.1434E-05	0.25338	0.00014716	580.7923547013237	78.087	2.1809	78.087	77.716	79.897	0					140	75	4	0	0	0	0.023873	2	18888	18843;18888		55.503	27.016	1	1941200			24780	3588	16406	16566	33378;33379	33379					-0.0031706903434951528
YGLEKFWAF	9	Unmodified	_YGLEKFWAF_					0	0	0		nc|ENSG00000155506|Q6PKG0-3|LARP1;ENSG00000155506|ENST00000518297|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.792724609375	2	580.792392	1159.57023	0.6346	0.00036857	-0.21642	-0.00012569	0.41819	0.00024288	580.7923114604212	78.008	1.7051	78.043	77.822	79.527	0.034485					121	59	4	0	0	0	0.023873	2	18725	18679;18725		55.503	28.267	1	1960500			24781	3588	16406	16566	33380;33381	33381					-0.0031706903434951528
YGLHWLHAF	9	Unmodified	_YGLHWLHAF_					0	0	0			REV__RFC2|p.L282F|1|0.36|ENSG00000049541|chr7:74235642-74235642|G/A|missense_variant	REV__RFC2|p.L282F|1|0.36|ENSG00000049541|chr7:74235642-74235642|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3088989257812	2	572.290351	1142.56615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.522	1	78.522	78.022	79.022	0								0	0	0	0.18155	1	19012	19012		20.871	2.7362	1		+		24782	12974	16407	16567	33382	33382					0.0005688626260962337
YGLLIGGEEL	10	Unmodified	_YGLLIGGEEL_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2718505859375	2	532.28714	1062.55973	0.50843	0.00027063	-1.053	-0.00056051	-0.54459	-0.00028988	532.286494327324	75.026	0.40144	75.026	74.823	75.225	0					36	14	3	0	0	0	0.27354	1	17965	17965		25.399	1.3787	1	969430			24783	597	16408	16568	33383	33383					0.03094903520582193
YGLMVCYGR	9	Unmodified	_YGLMVCYGR_					0	0	0			REV__ENST00000511147.1_1_17:48549827-48551039:+|nuORF	REV__ENST00000511147.1_1_17:48549827-48551039:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.23828125	2	531.24898	1060.48341	0.31423	0.00016693	-0.65106	-0.00034587	-0.33683	-0.00017894	531.2485608952026	37.644	0.28875	37.644	37.494	37.783	0					15	9	2	0	0	0	0.25845	1	6538	6538		2.0598	0.40713	1	33286	+		24784	7690	16409	16569	33384	33384					-0.04441514852055661
YGLPIWNLF	9	Unmodified	_YGLPIWNLF_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8026733398438	2	561.80276	1121.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.907	1	70.965	70.465	71.465	0.058578								0	0	0	0.16627	1	16528	16528		23.148	10.617	1		+		24785	8250	16410	16570	33385	33385					0.03503521345305671
YGLSPFGC	8	Unmodified	_YGLSPFGC_					0	0	0			REV__ENSG00000198390|ENST00000355459|KRTAP13-1	REV__ENSG00000198390|ENST00000355459|KRTAP13-1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.18878173828125	2	422.188914	842.363275	0.12999	5.488E-05	-0.3171	-0.00013388	-0.18711	-7.8995E-05	422.1887015804562	95.692	0.64025	95.731	95.634	96.274	0.038872					54	30	2	0	0	0	0.54081	1	24211	24211		0.79363	0	1	632240	+		24786	10577	16411	16571	33386	33386					-0.06421179854169168
YGMRETTSIA	10	Unmodified	_YGMRETTSIA_					0	0	0			REV__tr|U7T218|U7T218_FUSNUGlycine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glyQPE=3SV=1	REV__tr|U7T218|U7T218_FUSNUGlycine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glyQPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7607421875	2	564.771331	1127.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.623	1	21.725	21.225	22.225	0.10178								0	0	0	0.33738	1	1807	1807		3.2813	1.2216	1		+		24787	13260	16412	16572	33387	33387					-0.03055412505023014
YGNTLVEFR	9	Unmodified	_YGNTLVEFR_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7824096679688	2	549.782556	1097.55056	0.10229	5.6237E-05	-1.7758	-0.0009763	-1.6735	-0.00092006	549.7823598234188	46.466	0.96695	46.466	45.617	46.584	0					85	38	3	0	0	0	0.0569	3	9243	9135;9185;9243		41.84	0	1	235500			24788	3856	16413	16573	33388;33389;33390	33390					0.005685549549070856
YGNTLVEFR	9	Unmodified	_YGNTLVEFR_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7830810546875	2	549.782556	1097.55056	0.32334	0.00017777	-0.25768	-0.00014167	0.06566	3.6099E-05	549.7825002888728	46.689	0.5499	46.689	46.594	47.144	0					57	26	3	0	0	0	0.091044	1	9320	9320		34.402	0	1	263780			24789	3856	16413	16573	33391	33391					0.005685549549070856
YGNTLVEFR	9	Unmodified	_YGNTLVEFR_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.7825927734375	2	549.782556	1097.55056	0.24706	0.00013583	0.064302	3.5352E-05	0.31136	0.00017118	549.7826372533951	51.886	1.1462	51.886	51.358	52.504	0					90	39	4	0	0	0	0.01943	4	10908	10860;10908;10960;11016		58.679	0	1	1074400			24790	3856	16413	16573	33392;33393;33394;33395	33393					0.005685549549070856
YGNTLVEFR	9	Unmodified	_YGNTLVEFR_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.282958984375	2	549.782556	1097.55056	0.19995	0.00010993	-0.92258	-0.00050722	-0.72263	-0.00039729	549.7825838311526	46.375	0.86517	46.461	45.701	46.566	0.085621					79	36	3	0	0	0	0.091044	5	9078	8917;8981;9032;9060;9078		34.402	0	1	220530			24791	3856	16413	16573	33396;33397;33398;33399;33400	33400					0.005685549549070856
YGNTLVEFR	9	Unmodified	_YGNTLVEFR_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7830810546875	2	549.782556	1097.55056	0.32409	0.00017818	-0.1556	-8.5548E-05	0.16849	9.2633E-05	549.7826339805855	46.545	0.60721	46.628	46.57	47.178	0.083096					48	31	2	0	0	0	0.091044	2	9153	9153;9225		34.402	0	1	283130			24792	3856	16413	16573	33401;33402	33401					0.005685549549070856
YGNTLVEFR	9	Unmodified	_YGNTLVEFR_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7828369140625	2	549.782556	1097.55056	0.37349	0.00020534	0.067843	3.7299E-05	0.44133	0.00024264	549.7824178215634	51.825	0.8395	51.892	51.553	52.393	0.067173					78	31	4	0	0	0	0.01943	5	10719	10706;10719;10753;10798;10865		58.679	3.8998	1	915160			24793	3856	16413	16573	33403;33404;33405;33406;33407	33404					0.005685549549070856
YGPEARCPSL	10	Unmodified	_YGPEARCPSL_					0	0	0		ENST00000556095.5_1_14:96830416-96830617:+|nuORF	ENST00000556095.5_1_14:96830416-96830617:+|nuORF	ENST00000556095.5_1_14:96830416-96830617:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7604370117188	2	546.760766	1091.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.599	1	32.599	32.099	33.099	0								0	0	0	0.33905	1	5068	5068		1.3295	0.63916	1				24794	7127	16414	16574	33408	33408					-0.035113778139020724
YGRCGDFW	8	Unmodified	_YGRCGDFW_					0	0	0			REV__ENST00000596604.5_1_19:58388396-58400219:-|nuORF	REV__ENST00000596604.5_1_19:58388396-58400219:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.81524658203125	2	502.20817	1002.40179	0.070508	3.541E-05	0.76097	0.00038216	0.83148	0.00041757	502.20840474089397	104.88	0.19501	104.88	104.83	105.02	0					26	18	2	0	0	0	0.3576	1	26998	26998		0.69038	0	1	44887	+		24795	12611	16415	16575	33409	33409					-0.09931874219648762
YGRCGDFW	8	Unmodified	_YGRCGDFW_					0	0	0			REV__ENST00000596604.5_1_19:58388396-58400219:-|nuORF	REV__ENST00000596604.5_1_19:58388396-58400219:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	502.20817	1002.40179	0.32427	0.00016285	0.011088	5.5684E-06	0.33535	0.00016842	502.20800592921194	104.9	0.11088	104.93	104.88	104.99	0.034004	0.026495	-0.00031435	NaN	0.69038	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41473	+		24796	12611	16415	16575							-0.09931874219648762
YGRIEILSGF	10	Unmodified	_YGRIEILSGF_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.8136596679688	2	577.813856	1153.61316	0.47423	0.00027402	-0.048517	-2.8034E-05	0.42571	0.00024598	577.8137810807536	67.591	0.8997	67.591	67.368	68.267	0					55	33	3	0	0	0	0.18939	1	15674	15674		34.932	0	1	222710			24797	3260	16416	16576	33410	33410					0.04249701023104535
YGRIEILSGF	10	Unmodified	_YGRIEILSGF_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.8139038085938	2	577.813856	1153.61316	0.71494	0.0004131	-0.060121	-3.4739E-05	0.65482	0.00037837	577.8136810681344	67.528	0.72301	67.593	67.408	68.131	0.065071					39	25	2	0	0	0	0.27736	2	15484	15484;15543		24.991	0	1	393960			24798	3260	16416	16576	33411;33412	33411					0.04249701023104535
YGRTQMTLTF	10	Unmodified	_YGRTQMTLTF_					0	0	0		ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	609.3033447265625	2	609.302798	1216.59104	0.10699	6.5188E-05	0.48841	0.00029759	0.5954	0.00036278	609.3028130959739	73.021	1.3011	73.021	72.556	73.857	0					94	46	3	0	0	0	0.36006	3	17330	17286;17330;17385		16.149	5.3252	1	479680			24799	499	16417	16577	33413;33414;33415	33414					-0.008588467169829528
YGRTQMTLTF	10	Unmodified	_YGRTQMTLTF_					0	0	0		ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	609.3023681640625	2	609.302798	1216.59104	0.32479	0.0001979	0.13428	8.1815E-05	0.45907	0.00027971	609.3026611531483	72.952	1.1877	73.004	72.535	73.723	0.052567					85	43	3	0	0	0	0.40359	2	17144	17144;17157		11.495	4.7715	1	353160			24800	499	16417	16577	33416;33417	33416					-0.008588467169829528
YGSALYDEVM	10	Unmodified	_YGSALYDEVM_					0	0	0			REV__ENST00000465974.5_1_19:9724728-9730180:-|nuORF	REV__ENST00000465974.5_1_19:9724728-9730180:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7724609375	2	574.25244	1146.49033	0.1738	9.9804E-05	-2.6756	-0.0015365	-2.5018	-0.0014367	574.7534769598745	52.563	0.66132	52.563	52.424	53.085	0					34	23	2	0	0	0	0.43972	1	11141	11141		6.7232	0	1	122480	+		24801	10257	16418	16578	33418	33418					-0.0770592349049366
YGSGNYNDF	9	Unmodified	_YGSGNYNDF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	518.7471923828125	2	518.703971	1035.39339	0.37257	0.00019325	0.53973	0.00027996	0.9123	0.00047322	518.7042572589365	47.875	0.28337	47.875	47.735	48.018	0					15	9	2	0	0	0	0.25346	1	9688	9688		7.1017	1.8711	1	94891			24802	2187	16419	16579	33419	33419					-0.12289149655271103
YGSKKQMATV	10	Unmodified	_YGSKKQMATV_					0	0	0			REV__ENST00000478905.1_1_2:175945382-175957815:-|nuORF	REV__ENST00000478905.1_1_2:175945382-175957815:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7844848632812	2	556.792066	1111.56958	0.42484	0.00023655	-3.2277	-0.0017971	-2.8028	-0.0015606	556.7900746907043	56.295	0.29085	56.361	56.28	56.571	0.066452					20	10	3	0	0	0	0.28526	1	12071	12071		27.629	2.2295	1	175140	+		24803	8801	16420	16580	33420	33420					0.018257682542980547
YGSRLDYFQ	9	Unmodified	_YGSRLDYFQ_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7721557617188	2	574.772188	1147.52982	-0.17805	-0.00010234	0.051001	2.9314E-05	-0.12705	-7.3024E-05	574.7721595810391	43.203	0.91315	43.203	42.916	43.829	0					82	32	4	0	0	0	0.27332	2	8295	8295;8338		10.074	0.6908	1	394950			24804	3328	16421	16581	33421;33422	33421					-0.03804035424764152
YGSRLDYFQ	9	Unmodified	_YGSRLDYFQ_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7722778320312	2	574.772188	1147.52982	0.17018	9.7818E-05	-0.92164	-0.00052973	-0.75145	-0.00043191	574.7721793678236	51.463	3.1824	51.463	50.981	54.164	0					259	115	5	0	0	0	0.15282	7	10751	10668;10751;10804;10941;10985;11192;11514		24.021	3.606	1	1793800			24805	3328	16421	16581	33423;33424;33425;33426;33427;33428;33429	33424					-0.03804035424764152
YGSRLDYFQ	9	Unmodified	_YGSRLDYFQ_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7724609375	2	574.772188	1147.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.819	1	46.819	46.319	47.319	0								0	0	0	0.26517	1	9353	9353		6.2058	0.47393	1				24806	3328	16421	16581	33430	33430					-0.03804035424764152
YGSRLDYFQ	9	Unmodified	_YGSRLDYFQ_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7725219726562	2	574.772188	1147.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.385	1	54.385	53.885	54.885	0								0	0	0	0.22204	1	11648	11648		14.838	1.7958	1				24807	3328	16421	16581	33431	33431					-0.03804035424764152
YGSRLDYFQ	9	Unmodified	_YGSRLDYFQ_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7720947265625	2	574.772188	1147.52982	-0.079702	-4.5811E-05	0.25374	0.00014584	0.17404	0.00010003	574.772166192059	43.105	0.94711	43.194	42.955	43.902	0.089767					85	34	4	0	0	0	0.23216	4	8069	8069;8112;8164;8213		14.838	0.93222	1	449030			24808	3328	16421	16581	33432;33433;33434;33435	33432					-0.03804035424764152
YGSRLDYFQ	9	Unmodified	_YGSRLDYFQ_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7718505859375	2	574.772188	1147.52982	0.24984	0.0001436	0.20708	0.00011903	0.45692	0.00026263	574.7722654278996	46.58	0.93046	46.663	46.577	47.507	0.083096					67	43	2	0	0	0	0.27332	3	9164	9164;9210;9255		10.074	0.6908	1	182620			24809	3328	16421	16581	33436;33437;33438	33436					-0.03804035424764152
YGSRLDYFQ	9	Unmodified	_YGSRLDYFQ_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.772216796875	2	574.772188	1147.52982	0.26944	0.00015486	-0.88611	-0.00050931	-0.61667	-0.00035445	574.7721335989038	51.386	1.5548	51.456	50.996	52.551	0.069878					215	59	5	0	0	0	0.18364	8	10562	10505;10562;10653;10702;10738;10744;10791;10839		20.454	2.3073	1	1744200			24810	3328	16421	16581	33439;33440;33441;33442;33443;33444;33445;33446	33440					-0.03804035424764152
YGSRLDYFQ	9	Unmodified	_YGSRLDYFQ_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7721557617188	2	574.772188	1147.52982	0.37379	0.00021484	-0.044796	-2.5747E-05	0.32899	0.0001891	574.7721212037928	52.985	1.9548	53.05	52.391	54.346	0.06543					189	83	3	0	0	0	0.23216	2	11032	11032;11200		14.838	0.93222	1	335510			24811	3328	16421	16581	33447;33448	33447					-0.03804035424764152
YGSWEMIKMDP	11	Unmodified	_YGSWEMIKMDP_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1;ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.87042236328125	3	452.870275	1355.58899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.93	1	37.93	37.43	38.43	0								0	0	0	0.34083	1	6669	6669		0.45452	0	1				24812	3536	16422	16582	33449	33449					-0.07457643517113866
YGSYRFPPWA	10	Unmodified	_YGSYRFPPWA_					0	0	0		ENSG00000011083|ENST00000230671|SLC6A7	ENSG00000011083|ENST00000230671|SLC6A7	ENSG00000011083|ENST00000230671|SLC6A7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	415.82965087890625	3	415.201341	1242.58219	-0.20687	-8.5892E-05	-1.9703	-0.00081809	-2.1772	-0.00090398	415.200619601247	40.933	0.80582	40.933	40.714	41.52	0					39	28	2	0	0	0	0.31667	1	7572	7572		9.544	5.9569	1	66044			24813	421	16423	16583	33450	33450					-0.029394522911388776
YGTSGGNWNI	10	Unmodified	_YGTSGGNWNI_					0	0	0			REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20	REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	534.7407836914062	2	534.740888	1067.46722	0.48441	0.00025903	0.091552	4.8956E-05	0.57596	0.00030799	534.7409050141666	57.983	0.54412	58.052	57.869	58.413	0.068375					52	20	3	0	0	0	0.34138	2	12660	12608;12660		18.146	1.4022	1	438040	+		24814	12884	16424	16584	33451;33452	33452					-0.06381181492952237
YGTSGGNWNI	10	Unmodified	_YGTSGGNWNI_					0	0	0			REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20	REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	534.740888	1067.46722	0.30573	0.00016349	0.077248	4.1307E-05	0.38298	0.0002048	534.7409957594595	58.087	0.41803	58.087	57.799	58.217	0	0.017606	-9.0987E-06	NaN	18.146	39	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	566190	+		24815	12884	16424	16584							-0.06381181492952237
YGVGWTATT	9	Unmodified	_YGVGWTATT_					0	0	0			REV__ENST00000478934.5_1_6:33238004-33239739:-|nuORF	REV__ENST00000478934.5_1_6:33238004-33239739:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.2184143066406	2	478.229625	954.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.673	1	28.673	28.173	29.173	0								0	0	0	0.25361	1	3908	3908		8.5933	3.3626	1		+		24816	11904	16425	16585	33453	33453					-0.03434780890586353
YGVGWTATT	9	Unmodified	_YGVGWTATT_					0	0	0			REV__ENST00000478934.5_1_6:33238004-33239739:-|nuORF	REV__ENST00000478934.5_1_6:33238004-33239739:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.21832275390625	2	478.229625	954.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.537	1	28.619	28.119	29.119	0.082134								0	0	0	0.2722	1	3742	3742		4.756	1.8668	1		+		24817	11904	16425	16585	33454	33454					-0.03434780890586353
YGWSYCLAW	9	Unmodified	_YGWSYCLAW_					0	0	0		ENSG00000214978|ENST00000399363|GSG1L2	ENSG00000214978|ENST00000399363|GSG1L2	ENSG00000214978|ENST00000399363|GSG1L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2691650390625	2	574.747127	1147.4797	0.37422	0.00021508	-3.388	-0.0019472	-3.0138	-0.0017322	574.7452496806334	91.124	0.37156	91.124	91.063	91.435	0					20	12	2	0	0	0	0.2491	1	22914	22914		8.5933	3.3626	1	85940			24818	5573	16426	16586	33455	33455					-0.08813861354292385
YGWVILLTW	9	Unmodified	_YGWVILLTW_					0	0	0			REV__ENSG00000166224|ENST00000373202|SGPL1	REV__ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2681884765625	2	575.81841	1149.62227	0.14685	8.4558E-05	-3.0853	-0.0017766	-2.9385	-0.001692	575.8166052972754	72.37	0.19653	72.426	72.296	72.493	0.055931					10	6	2	0	0	0	0.24263	1	16951	16951		12.532	2.4576	1	60762	+		24819	10066	16427	16587	33456	33456					0.05344094379415765
YGWVILLTW	9	Unmodified	_YGWVILLTW_					0	0	0			REV__ENSG00000166224|ENST00000373202|SGPL1	REV__ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2677612304688	2	575.81841	1149.62227	0.14317	8.2438E-05	-2.4304	-0.0013995	-2.2873	-0.0013171	575.8166769204458	72.491	0.22928	72.547	72.493	72.722	0.055939					9	7	2	0	0	0	0.164	1	17001	17001		30.225	5.2339	1	38522	+		24820	10066	16427	16587	33457	33457					0.05344094379415765
YHCIFRYK	8	Unmodified	_YHCIFRYK_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.283935546875	2	565.284211	1128.55387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.664	1	22.766	22.266	23.266	0.10178								0	0	0	0.38822	1	2084	2084		0.79363	0	1				24821	741	16428	16588	33458	33458					-0.0052647347208676365
YHFACVTI	8	Unmodified	_YHFACVTI_					0	0	0			REV__ENSG00000144891|ENST00000349243|AGTR1	REV__ENSG00000144891|ENST00000349243|AGTR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	477.2305908203125	2	477.231113	952.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.167	1	90.201	89.701	90.701	0.034065								0	0	0	0.38822	1	22397	22397		0.79363	0	1		+		24822	9509	16429	16589	33459	33459					-0.03045229037422814
YHFFPPTL	8	Unmodified	_YHFFPPTL_					0	0	0			REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2613525390625	2	511.260728	1020.5069	-0.13545	-6.9249E-05	1.5697	0.00080252	1.4342	0.00073328	511.26149243312113	29.49	0.37017	29.49	29.351	29.721	0					36	20	3	0	0	0	0.53345	1	4167	4167		5.7604	5.7604	1	48110	+		24823	12260	16430	16590	33460	33460					-0.0025300975157733774
YHFFPPTL	8	Unmodified	_YHFFPPTL_					0	0	0			REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.26129150390625	2	511.260728	1020.5069	-0.10283	-5.2574E-05	1.5161	0.00077513	1.4133	0.00072255	511.26140832002704	29.473	0.38667	29.551	29.363	29.749	0.078287					34	21	2	0	0	0	0.53345	1	4030	4030		5.7604	0	1	47374	+		24824	12260	16430	16590	33461	33461					-0.0025300975157733774
YHFFPPTL	8	Unmodified	_YHFFPPTL_					0	0	0			REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	511.260728	1020.5069	-0.13545	-6.9249E-05	1.5697	0.00080252	1.4342	0.00073328	511.26149243312113	29.49	0.37017	29.49	29.351	29.721	0	-0.030337	2.3071E-05	NaN	5.7604	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48110	+		24825	12260	16430	16590							-0.0025300975157733774
YHFKCYVA	8	Unmodified	_YHFKCYVA_					0	0	0			REV__ENSG00000121691|ENST00000241052|CAT	REV__ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	515.7460327148438	2	515.744388	1029.47422	0.46347	0.00023903	2.7861	0.0014369	3.2495	0.0016759	515.7455780814604	47.595	0.69786	47.595	47.263	47.961	0					34	23	2	0	0	0	0.53423	1	9640	9640		5.2307	0.90143	1	59461	+		24826	8903	16431	16591	33462	33462					-0.039335401460903086
YHFYDAYA	8	Unmodified	_YHFYDAYA_					0	0	0			REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.221435546875	2	525.2218	1048.42905	-0.13852	-7.2755E-05	-1.3706	-0.00071985	-1.5091	-0.00079261	525.220907484963	32.176	0.53313	32.176	31.937	32.47	0					47	20	4	0	0	0	0.53423	1	4917	4917		5.2307	0.90143	1	30871	+		24827	13034	16432	16592	33463	33463					-0.09323067407626695
YHGMLNPFF	9	Unmodified	_YHGMLNPFF_					0	0	0			REV__nc|ENSG00000164930|O60353-2|FZD6	REV__nc|ENSG00000164930|O60353-2|FZD6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.26416015625	2	563.262945	1124.51134	0.16348	9.2084E-05	2.6173	0.0014742	2.7807	0.0015663	563.2643055102258	51.564	0.51969	51.564	51.417	51.937	0					32	17	3	0	0	0	0.29105	1	10788	10788		7.9102	0.62092	1	104810	+		24828	10011	16433	16593	33464	33464					-0.04593868600318274
YHGNLTGRA	9	Unmodified	_YHGNLTGRA_					0	0	0		ENSG00000260802|ENST00000569275|SERTM2	ENSG00000260802|ENST00000569275|SERTM2	ENSG00000260802|ENST00000569275|SERTM2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7507019042969	2	494.75159	987.488627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.383	1	27.469	26.969	27.969	0.0867								0	0	0	0.26517	1	3402	3402		6.2058	3.903	1				24829	5713	16434	16594	33465	33465					-0.005617516735810568
YHIIYCDSF	9	Unmodified	_YHIIYCDSF_					0	0	0			REV__nc|ENSG851|Q9QC07|ERVK-18_pol	REV__nc|ENSG851|Q9QC07|ERVK-18_pol	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7680053710938	2	580.757692	1159.50083	0.36025	0.00020922	0.82151	0.0004771	1.1818	0.00068631	580.7558950493677	91.158	0.96356	91.194	90.729	91.692	0.035446					111	34	5	0	0	0	0.28587	1	22782	22782		8.5933	0.68312	1	563700	+		24830	12926	16435	16595	33466	33466					-0.072538960454267
YHLLLKELL	9	Unmodified	_YHLLLKELL_					0	0	0		nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2	nc|ENSG00000160293|P52735-3|VAV2	nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.3573608398438	2	571.352617	1140.69068	-0.082862	-4.7343E-05	3.5722	0.002041	3.4894	0.0019937	571.8553658115993	108.35	0.042526	108.35	108.32	108.36	0					6	5	2	0	0	0	0.3182	1	27943	27943		4.3292	0	1	1053000			24831	3756	16436	16596	33467	33467					0.12596338959292552
YHMSSIRA	8	Unmodified	_YHMSSIRA_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.72540283203125	2	482.737094	963.459635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.291	1	83.291	82.791	83.791	0								0	0	0	0.38822	1	20465	20465		2.3027	0	1				24832	4389	16437	16597	33468	33468					-0.023556122942295588
YHNNTAFSTK	10	Unmodified	_YHNNTAFSTK_					0	0	0		ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.7947998046875	2	591.780544	1181.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.044	1	66.044	65.544	66.544	0								0	0	0	0.33092	1	15204	15204		10.824	5.9269	1				24833	4463	16438	16598	33469	33469					-0.03697534538810032
YHPAGDAF	8	Unmodified	_YHPAGDAF_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.2048645019531	2	439.195585	876.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.456	1	57.524	57.024	58.024	0.068375								0	0	0	0.38822	1	12449	12449		2.8892	0	1		+		24834	9064	16439	16599	33470	33470					-0.06651605750573708
YHPLLPSTSF	10	Unmodified	_YHPLLPSTSF_					0	0	0			REV__ENSG00000214414|ENST00000398290|TRIM77	REV__ENSG00000214414|ENST00000398290|TRIM77	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.3312377929688	2	581.300581	1160.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.539	1	82.539	82.039	83.039	0								0	0	0	0.33487	1	20236	20236		6.2058	0	1		+		24835	11004	16440	16600	33471	33471					0.012740121317619924
YHPSINDYIH	10	Unmodified	_YHPSINDYIH_					0	0	0		nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.7608032226562	2	629.796195	1257.57784	0.70717	0.00044537	1.21	0.00076202	1.9171	0.0012074	629.7970064813213	67.453	0.28783	67.518	67.378	67.666	0.065071					15	9	2	0	0	0	0.43343	2	15518	15508;15518		7.9102	2.6795	1	82559			24836	2730	16441	16601	33472;33473	33473					-0.04064961504718667
YHQILDASEC	10	Unmodified	_YHQILDASEC_					0	0	0			REV__ENSG00000178229|ENST00000321545|ZNF543	REV__ENSG00000178229|ENST00000321545|ZNF543	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7597045898438	2	589.760963	1177.50737	0.1679	9.902E-05	-2.2542	-0.0013294	-2.0863	-0.0012304	589.7596956638287	58.347	0.28592	58.347	58.256	58.542	0					19	10	2	0	0	0	0.43214	1	12849	12849		8.1555	0	1	120960	+		24837	10443	16442	16602	33474	33474					-0.07428002884671514
YHRVWGAWH	9	Unmodified	_YHRVWGAWH_					0	0	0		ENST00000374280.3_1_1:26348274-26348409:+|nuORF	ENST00000374280.3_1_1:26348274-26348409:+|nuORF	ENST00000374280.3_1_1:26348274-26348409:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7538452148438	2	606.296499	1210.57845	0.92777	0.0005625	-1.849	-0.001121	-0.92118	-0.00055851	606.2952058229494	65.804	0.32333	65.871	65.615	65.939	0.066872					21	12	2	0	0	0	0.25051	1	15001	15001		7.9102	0	1	170640			24838	6232	16443	16603	33475	33475					-0.018420772743411362
YHSMPTYL	8	Unmodified	_YHSMPTYL_					0	0	0		ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7355651855469	2	506.233853	1010.45315	0.32337	0.0001637	-0.19381	-9.8113E-05	0.12956	6.5587E-05	506.23372728615584	57.477	1.6167	57.477	56.6	58.217	0					165	58	4	0	0	0	0.53423	1	12416	12416		5.2307	0	1	959830			24839	1553	16444	16604	33476	33476					-0.0516555024560148
YHSMPTYL	8	Unmodified	_YHSMPTYL_					0	0	0		ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2345886230469	2	506.233853	1010.45315	0.29716	0.00015043	-0.12134	-6.1427E-05	0.17582	8.9005E-05	506.233768038583	57.383	2.7096	57.451	56.308	59.017	0.068371					210	100	4	0	0	0	0.53423	1	12266	12266		5.2307	0	1	753400			24840	1553	16444	16604	33477	33477					-0.0516555024560148
YHTQAFVAEL	10	Unmodified	_YHTQAFVAEL_					0	0	0			REV__ENSG00000165606|ENST00000374139|DRGX	REV__ENSG00000165606|ENST00000374139|DRGX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2465209960938	2	589.795663	1177.57677	0.69808	0.00041172	1.4665	0.00086496	2.1646	0.0012767	589.7943260369218	67.226	0.11325	67.226	67.126	67.239	0					5	3	2	0	0	0	0.31691	1	15560	15560		7.2892	2.5332	1	55341	+		24841	10041	16445	16605	33478	33478					-0.004911758736170668
YHTSKWQPF	9	Unmodified	_YHTSKWQPF_					0	0	0			REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.289794921875	2	597.290548	1192.56654	0.61682	0.00036842	-0.606	-0.00036196	0.010817	6.4607E-06	597.2900272404696	65.82	0.52776	65.82	65.578	66.106	0					22	18	2	0	0	0	0.26684	1	15126	15126		10.824	0.75	1	143100	+		24842	9913	16446	16606	33479	33479					-0.022037388082026155
YHVIWHWE	8	Unmodified	_YHVIWHWE_					0	0	0		ENSG00000176402|ENST00000312891|GJC3	ENSG00000176402|ENST00000312891|GJC3	ENSG00000176402|ENST00000312891|GJC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2665405273438	2	585.279983	1168.54541	0.082081	4.804E-05	-0.83686	-0.0004898	-0.75478	-0.00044176	585.2794721958281	29.85	0.39646	29.85	29.721	30.117	0					30	17	2	0	0	0	0.53817	2	4268	4268;4295		2.5775	0.27475	1	16032			24843	4662	16447	16607	33480;33481	33480					-0.0321170411705225
YHVIWHWE	8	Unmodified	_YHVIWHWE_					0	0	0		ENSG00000176402|ENST00000312891|GJC3	ENSG00000176402|ENST00000312891|GJC3	ENSG00000176402|ENST00000312891|GJC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2679443359375	2	585.279983	1168.54541	0.092606	5.4201E-05	-0.50474	-0.00029541	-0.41213	-0.00024121	585.2796384428805	31.29	0.70831	31.29	30.889	31.597	0					50	33	2	0	0	0	0.54097	1	4634	4634		0.69038	0.088878	1	22513			24844	4662	16447	16607	33482	33482					-0.0321170411705225
YHWKGFEF	8	Unmodified	_YHWKGFEF_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;ENST00000507684.1_1_6:31976393-31978991:-|nuORF;nc|ENSG00000168477|P22105-2|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2853393554688	2	557.261259	1112.50797	0.54656	0.00030458	-2.1276	-0.0011856	-1.581	-0.00088104	557.2584535591419	96.602	0.3007	96.602	96.486	96.787	0					21	12	3	0	0	0	0.3576	1	24500	24500		2.5775	0.27475	1	61718			24845	4293	16448	16608	33483	33483					-0.043787953826722514
YHWSLISWG	9	Unmodified	_YHWSLISWG_					0	0	0		SLC25A51|p.R278W|1|0.18|ENSG00000122696|chr9:37887719-37887719|G/A|missense_variant	SLC25A51|p.R278W|1|0.18|ENSG00000122696|chr9:37887719-37887719|G/A|missense_variant	SLC25A51|p.R278W|1|0.18|ENSG00000122696|chr9:37887719-37887719|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2904052734375	2	574.779816	1147.54508	0.10853	6.2384E-05	-0.54932	-0.00031574	-0.44078	-0.00025335	574.7794966831281	35.008	0.70118	35.087	34.706	35.407	0.078827					50	29	2	0	0	0	0.25875	1	5757	5757		1.8442	0	1	27282			24846	13367	16449	16609	33484	33484					-0.022791238369109124
YIAPEVLVR	9	Unmodified	_YIAPEVLVR_					0	0	0		ENSG00000159792|ENST00000291041|PSKH1	ENSG00000159792|ENST00000291041|PSKH1	ENSG00000159792|ENST00000291041|PSKH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.8150024414062	2	530.313492	1058.61243	0.22664	0.00012019	0.36945	0.00019592	0.59609	0.00031612	530.3135991574352	73.992	1.1624	73.992	73.661	74.823	0					89	42	3	0	0	0	0.29105	1	17754	17754		7.9102	0.62092	1	2169400			24847	3741	16450	16610	33485	33485					0.08546906374044738
YIAPMHLIY	9	Unmodified	_YIAPMHLIY_					0	0	0		ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.795654296875	2	560.79662	1119.57869	0.38272	0.00021463	0.060964	3.4188E-05	0.44369	0.00024882	560.7949248388361	76.74	0.69878	76.74	76.445	77.144	0					63	24	4	0	0	0	0.24749	1	18590	18590		5.2307	0	1	263760			24848	6566	16451	16611	33486	33486					0.023681616106387082
YIAPMHLIY	9	Unmodified	_YIAPMHLIY_					0	0	0		ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	560.79662	1119.57869	0.49374	0.00027689	-2.7911	-0.0015652	-2.2973	-0.0012883	560.7947938042375	76.738	0.44366	76.778	76.552	76.996	0.03923	0.019021	-0.00054725	NaN	14.582	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164510			24849	6566	16451	16611							0.023681616106387082
YIAQPCLLY	9	Unmodified	_YIAQPCLLY_					0	0	0		ENST00000552283.5_1_12:102467249-102467429:-|nuORF	ENST00000552283.5_1_12:102467249-102467429:-|nuORF	ENST00000552283.5_1_12:102467249-102467429:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7910766601562	2	542.280803	1082.54705	0.85764	0.00046508	-1.6885	-0.00091563	-0.83085	-0.00045055	542.2799908112388	80.325	0.48466	80.325	80.14	80.625	0					25	16	2	0	0	0	0.19069	1	19515	19515		24.674	2.9272	1	132630			24850	7107	16452	16612	33487	33487					0.009081688566993762
YIARNIELPF	10	Unmodified	_YIARNIELPF_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3433227539062	2	618.342781	1234.67101	-0.028645	-1.7712E-05	0.38703	0.00023932	0.35839	0.00022161	618.3428853729217	76.053	0.56037	76.092	75.908	76.469	0.03923					66	31	3	0	0	0	0.42335	1	18175	18175		9.3831	0	1	2454400	+		24851	8816	16453	16613	33488	33488					0.06305962948499655
YIAWVMLTKC	10	Unmodified	_YIAWVMLTKC_					0	0	0		ENST00000467707.1_1_9:128116999-128121864:+|nuORF	ENST00000467707.1_1_9:128116999-128121864:+|nuORF	ENST00000467707.1_1_9:128116999-128121864:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.2957153320312	2	614.316863	1226.61917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.338	1	81.338	80.838	81.838	0								0	0	0	0.33035	1	19871	19871		11.495	2.1116	1				24852	6649	16454	16614	33489	33489					0.014927599387419832
YIAWVMLTKC	10	Unmodified	_YIAWVMLTKC_					0	0	0		ENST00000467707.1_1_9:128116999-128121864:+|nuORF	ENST00000467707.1_1_9:128116999-128121864:+|nuORF	ENST00000467707.1_1_9:128116999-128121864:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.295654296875	2	614.316863	1226.61917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.384	1	82.384	81.884	82.884	0								0	0	0	0.33035	1	20189	20189		11.495	3.5846	1				24853	6649	16454	16614	33490	33490					0.014927599387419832
YICDLITYD	9	Unmodified	_YICDLITYD_					0	0	0			REV__ENSG00000169371|ENST00000308588|SNUPN	REV__ENSG00000169371|ENST00000308588|SNUPN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2911987304688	2	559.757358	1117.50016	0.58614	0.0003281	-2.3523	-0.0013167	-1.7661	-0.00098861	560.2582862679917	64.403	0.13262	64.472	64.374	64.506	0.068916					6	4	2	0	0	0	0.25504	1	14554	14554		4.756	0	1	60186	+		24854	10171	16455	16615	33491	33491					-0.053887354851212876
YICFSLTCI	9	Carbamidomethyl (C)	_YIC(Carbamidomethyl (C))FSLTCI_	YIC(1)FSLTCI		YIC(34)FSLTC(-34)I		0	1	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2645263671875	2	560.264296	1118.51404	0.68525	0.00038392	-0.19595	-0.00010978	0.4893	0.00027414	560.2642626779891	82.178	1.1198	82.178	81.78	82.9	0					110	39	5	0	0	0	0.030375	1	20138	20138		50.855	8.7605	2	1914700	+		24855	9690	16456	16616	33492	33492	16				-0.040477812576909855
YICHVLLCI	9	Unmodified	_YICHVLLCI_					0	0	0		ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.3272094726562	2	538.785198	1075.55584	0.32258	0.0001738	1.0762	0.00057985	1.3988	0.00075366	538.7857289710676	95.213	0.41769	95.213	95.049	95.467	0					45	17	3	0	0	0	0.20644	1	24108	24108		20.871	0	1	410290			24856	6676	16457	16617	33493	33493					0.02108819221507474
YICHVLLCI	9	Unmodified	_YICHVLLCI_					0	0	0		ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.3272094726562	2	538.785198	1075.55584	0.37525	0.00020218	1.0304	0.00055514	1.4056	0.00075732	538.7855923907238	95.239	0.38204	95.278	95.067	95.45	0.038864					46	15	4	0	0	0	0.20644	1	23946	23946		20.871	0	1	372240			24857	6676	16457	16617	33494	33494					0.02108819221507474
YIDALHTDL	9	Unmodified	_YIDALHTDL_					0	0	0			REV__ENSG00000144130|ENST00000688554|NT5DC4	REV__ENSG00000144130|ENST00000688554|NT5DC4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7686767578125	2	530.769114	1059.52368	0.34592	0.0001836	-0.35587	-0.00018889	-0.0099546	-5.2836E-06	530.7688005795695	52.172	0.85733	52.239	51.97	52.827	0.067173					78	33	4	0	0	0	0.29105	1	10940	10940		7.9102	0	1	597160	+		24858	9490	16458	16618	33495	33495					-0.0037055365630749293
YIDCIYLIF	9	Unmodified	_YIDCIYLIF_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2979736328125	2	581.796286	1161.57802	0.60875	0.00035417	-2.1349	-0.0012421	-1.5261	-0.0008879	582.2971212810014	97.005	0.71648	97.005	96.722	97.438	0					63	34	2	0	0	0	0.25209	1	24707	24707		12.532	0.89125	1	220850	+		24859	12994	16459	16619	33496	33496					0.003693221708999772
YIDIKNCPKK	10	Unmodified	_YIDIKNCPKK_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.8101196289062	2	611.336641	1220.65873	0.38605	0.00023601	-1.6687	-0.0010202	-1.2827	-0.00078414	611.335355393537	74.715	0.66428	74.764	74.396	75.061	0.048546					48	23	3	0	0	0	0.31687	1	17778	17778		10.074	2.7847	1	318380			24860	5394	16460	16620	33497	33497					0.05722603213803268
YIDIKNCPKK	10	Unmodified	_YIDIKNCPKK_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	611.336641	1220.65873	0.33618	0.00020552	-1.5396	-0.00094119	-1.2034	-0.00073567	611.3354899874965	74.712	0.50854	74.712	74.452	74.961	0	-0.025965	6.2914E-05	NaN	10.074	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238440			24861	5394	16460	16620							0.05722603213803268
YIDKRLVS	8	Unmodified	_YIDKRLVS_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2545166015625	2	497.290017	992.565481	-0.31309	-0.0001557	0.19406	9.6506E-05	-0.11903	-5.9192E-05	497.28999102781415	41.04	0.34333	41.04	40.881	41.225	0					20	12	2	0	0	0	0.3576	1	7609	7609		6.7232	0	1	27962	+		24862	9121	16461	16621	33498	33498					0.068900468229117
YIDKVFLNF	9	Unmodified	_YIDKVFLNF_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.7967529296875	2	579.813325	1157.6121	0.60356	0.00034995	-0.92099	-0.000534	-0.31743	-0.00018405	579.8123541053756	69.603	0.37509	69.603	69.443	69.818	0					23	12	3	0	0	0	0.12809	1	16317	16317		26.884	8.7373	1	120110	+		24863	10926	16462	16622	33499	33499					0.039594866541847296
YIDKVFLNF	9	Unmodified	_YIDKVFLNF_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7966918945312	2	579.813325	1157.6121	0.34465	0.00019983	0.13222	7.666E-05	0.47686	0.00027649	579.8131326931365	69.14	0.67061	69.203	69.054	69.724	0.062126					34	24	2	0	0	0	0.18364	1	16130	16130		20.454	4.3045	1	482890	+		24864	10926	16462	16622	33500	33500					0.039594866541847296
YIDKVFLNF	9	Unmodified	_YIDKVFLNF_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	579.813325	1157.6121	0.60356	0.00034995	-0.92099	-0.000534	-0.31743	-0.00018405	579.8123541053756	69.603	0.37509	69.603	69.443	69.818	0	0.19999	-0.00086464	NaN	26.884	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120110	+		24865	10926	16462	16622							0.039594866541847296
YIDKVFLNF	9	Unmodified	_YIDKVFLNF_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	579.813325	1157.6121	0.34465	0.00019983	0.13222	7.666E-05	0.47686	0.00027649	579.8131326931365	69.14	0.67061	69.203	69.054	69.724	0.062126	-0.19999	0.00035669	NaN	26.884	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482890	+		24866	10926	16462	16622							0.039594866541847296
YIDKVRFL	8	Unmodified	_YIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.3084716796875	2	527.30821	1052.60187	0.46623	0.00024585	-0.018947	-9.9909E-06	0.44728	0.00023586	527.3081034993919	55.555	0.37078	55.555	55.411	55.782	0					21	12	2	0	0	0	0.11768	1	12017	12017		51.63	19.324	1	133710			24867	494	16463	16623	33501	33501					0.07766923719623264
YIDKVRFL	8	Unmodified	_YIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.3085327148438	2	527.30821	1052.60187	0.34748	0.00018323	-0.32733	-0.0001726	0.020147	1.0624E-05	527.3078489292175	55.484	0.46571	55.549	55.402	55.868	0.065128					23	16	2	0	0	0	0.089527	1	11851	11851		56.177	10.156	1	82453			24868	494	16463	16623	33502	33502					0.07766923719623264
YIDKVRSL	8	Unmodified	_YIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.25469970703125	2	497.290017	992.565481	-0.17911	-8.9068E-05	-0.10532	-5.2375E-05	-0.28443	-0.00014144	497.29003438554963	40.974	0.36358	41.064	40.877	41.24	0.089645					19	13	2	0	0	0	0.3576	1	7459	7459		5.7319	2.1354	1	36139			24869	1797	16464	16624	33503	33503					0.06890046822900331
YIDLAEGQPIG	11	Unmodified	_YIDLAEGQPIG_					0	0	0			REV__ENSG00000140521|ENST00000268124|POLG	REV__ENSG00000140521|ENST00000268124|POLG	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.16845703125	2	588.300778	1174.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.371	1	98.413	97.913	98.913	0.041931								0	0	0	0.33281	1	24898	24898		3.2813	0	1		+		24870	9374	16465	16625	33504	33504					0.006693870609524311
YIDLAVLTF	9	Unmodified	_YIDLAVLTF_					0	0	0		ENST00000547020.1_1_12:53876285-53877059:-|nuORF	ENST00000547020.1_1_12:53876285-53877059:-|nuORF	ENST00000547020.1_1_12:53876285-53877059:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7943725585938	2	527.794601	1053.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.804	1	95.804	95.304	96.304	0								0	0	0	0.23884	1	24269	24269		11.64	0	1				24871	7080	16466	16626	33505	33505					0.05000395388560719
YIDLAVLTF	9	Unmodified	_YIDLAVLTF_					0	0	0		ENST00000547020.1_1_12:53876285-53877059:-|nuORF	ENST00000547020.1_1_12:53876285-53877059:-|nuORF	ENST00000547020.1_1_12:53876285-53877059:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7951049804688	2	527.794601	1053.57465	0.17257	9.108E-05	0.29069	0.00015342	0.46326	0.0002445	527.7947009742833	95.239	0.97873	95.278	95.002	95.981	0.038872					101	44	5	0	0	0	0.065541	1	24057	24057		39.957	5.8549	1	2925500			24872	7080	16466	16626	33506	33506					0.05000395388560719
YIDMTLYDLL	10	Unmodified	_YIDMTLYDLL_					0	0	0			REV__ENSG00000160539|ENST00000372264|PLPP7	REV__ENSG00000160539|ENST00000372264|PLPP7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.290771484375	2	630.31504	1258.61553	0.69243	0.00043645	-3.8718	-0.0024404	-3.1794	-0.002004	630.3125979923249	80.548	0.46854	80.572	80.327	80.795	0.023605					32	16	3	0	0	0	0.31691	1	19443	19443		7.2892	0	1	252790	+		24873	9851	16467	16627	33507	33507					-0.003436313540987612
YIDNQKTNF	9	Unmodified	_YIDNQKTNF_					0	0	0		tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3257446289062	2	571.77747	1141.54039	0.55709	0.00031853	-1.8578	-0.0010623	-1.3007	-0.00074373	571.7762872442538	97.939	0.15814	97.939	97.887	98.045	0					12	8	2	0	0	0	0.25579	1	24924	24924		4.3292	0.73274	1	31675			24874	13487	16468	16628	33508	33508					-0.024720527703493644
YIDNQKTNF	9	Unmodified	_YIDNQKTNF_					0	0	0		tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	571.77747	1141.54039	0.53973	0.0003086	-1.4486	-0.00082827	-0.90886	-0.00051967	571.7765458926252	97.954	0.25237	97.995	97.871	98.123	0.040855	0.028117	0.00037129	NaN	4.3292	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29093			24875	13487	16468	16628							-0.024720527703493644
YIDTHTTLL	9	Unmodified	_YIDTHTTLL_					0	0	0		tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.78466796875	2	538.784764	1075.55498	0.39182	0.0002111	-0.28929	-0.00015586	0.10253	5.5242E-05	538.7844836903638	59.691	1.2961	59.691	59.453	60.749	0					114	48	4	0	0	0	0.10067	2	13302	13258;13302		32.305	0	1	1192500			24876	13735	16469	16629	33509;33510	33510					0.02022019377795914
YIDTHTTLL	9	Unmodified	_YIDTHTTLL_					0	0	0		tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7847290039062	2	538.784764	1075.55498	0.36138	0.0001947	-0.23271	-0.00012538	0.12866	6.9322E-05	538.7845028296287	59.661	1.2242	59.733	59.379	60.603	0.072342					114	45	3	0	0	0	0.10067	1	13131	13131		32.305	0	1	868590			24877	13735	16469	16629	33511	33511					0.02022019377795914
YIEEGVMINSG	11	Unmodified	_YIEEGVMINSG_					0	0	0		tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3004150390625	2	606.284271	1210.55399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.091	1	79.12	78.62	79.62	0.029167								0	0	0	0.32709	1	19026	19026		5.2969	1.3525	1				24878	13684	16470	16630	33512	33512					-0.04286563053392456
YIEENVKEY	9	Unmodified	_YIEENVKEY_					0	0	0		ENSG00000145293|ENST00000273920|ENOPH1	ENSG00000145293|ENST00000273920|ENOPH1	ENSG00000145293|ENST00000273920|ENOPH1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.810791015625	2	593.784961	1185.55537	0.098886	5.8717E-05	-0.013532	-8.0352E-06	0.085354	5.0682E-05	594.285957684676	87.006	0.82462	87.033	86.859	87.684	0.027573					90	34	4	0	0	0	0.24791	1	21447	21447		10.074	3.8681	1	367690			24879	3242	16471	16631	33513	33513					-0.02998605692982892
YIEGLYYSF	9	Unmodified	_YIEGLYYSF_					0	0	0		ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7743530273438	2	577.773865	1153.53318	0.40118	0.00023179	-0.089613	-5.1776E-05	0.31157	0.00018002	577.7740626485098	82.099	2.322	82.121	81.846	84.168	0.021866					266	82	5	0	0	0	0.12809	1	20441	20441		26.884	12.045	1	10383000			24880	4024	16472	16632	33514	33514					-0.037447853707590184
YIEHNARTF	9	Unmodified	_YIEHNARTF_					0	0	0		ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000473813.1_1_21:40582792-40590527:-|nuORF;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	ENST00000473691.1_1_X:79938122-79975072:-|nuORF;ENST00000473813.1_1_21:40582792-40590527:-|nuORF	ENST00000473813.1_1_21:40582792-40590527:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7652587890625	2	575.78563	1149.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.677	1	57.677	57.177	58.177	0								0	0	0	0.19984	1	12654	12654		18.146	3.3081	1				24881	4076;5035	16473	16633	33515	33515					-0.012089268135923703
YIEIHSEAW	9	Unmodified	_YIEIHSEAW_					0	0	0			REV__ENSG00000171246|ENST00000306773|NPTX1	REV__ENSG00000171246|ENST00000306773|NPTX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7981567382812	2	574.274564	1146.53457	0.59961	0.00034434	-1.3411	-0.00077018	-0.74152	-0.00042584	574.7749970862552	67.088	0.41882	67.088	66.929	67.348	0					34	15	3	0	0	0	0.19069	1	15504	15504		24.674	6.5389	1	148570	+		24882	10249	16474	16634	33516	33516					-0.03283151282016661
YIEIHSEAW	9	Unmodified	_YIEIHSEAW_					0	0	0			REV__ENSG00000171246|ENST00000306773|NPTX1	REV__ENSG00000171246|ENST00000306773|NPTX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7985229492188	2	574.274564	1146.53457	0.71138	0.00040853	0.029154	1.6742E-05	0.74053	0.00042527	574.7758189885445	67.086	0.36906	67.151	66.923	67.292	0.065063					19	12	2	0	0	0	0.19069	1	15327	15327		24.674	6.5389	1	165220	+		24883	10249	16474	16634	33517	33517					-0.03283151282016661
YIEKSSMGKK	10	Unmodified	_YIEKSSMGKK_					0	0	0			REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.3152465820312	2	585.812999	1169.61144	0.7528	0.000441	0.35927	0.00021046	1.1121	0.00065147	585.8132146500172	98.764	0.69486	98.764	98.471	99.166	0					57	44	2	0	0	0	0.38912	1	25126	25126		13.042	0	1	139450	+		24884	9249	16475	16635	33518	33518					0.03342323942820258
YIEPLRSIL	9	Unmodified	_YIEPLRSIL_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3271484375	2	552.326599	1102.63865	0.63436	0.00035037	-0.17724	-9.7893E-05	0.45712	0.00025248	552.3266212950903	70.285	2.6145	70.285	69.991	72.605	0					242	93	5	0	0	0	0.18364	1	16751	16751		20.454	1.1966	1	16853000	+		24885	8491	16476	16636	33519	33519					0.09143175545523263
YIERYMYI	8	Unmodified	_YIERYMYI_					0	0	0			REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF	REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2854614257812	2	575.78371	1149.55287	0.20619	0.00011872	0.89923	0.00051776	1.1054	0.00063648	575.7843647328543	58.442	0.87814	58.513	58.163	59.041	0.070477					64	31	4	0	0	0	0.30669	1	12791	12791		34.102	3.8776	1	338190	+		24886	11217	16477	16637	33520	33520					-0.015927326316386825
YIEYYLVLD	9	Unmodified	_YIEYYLVLD_					0	0	0		nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28	nc|ENSG00000042980|Q9UKQ2-2|ADAM28	nc|ENSG00000042980|Q9UKQ2-2|ADAM28	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.8021850585938	2	595.802623	1189.59069	0.34017	0.00020267	-1.3153	-0.00078368	-0.97516	-0.000581	595.8018164640448	99.876	1.4615	99.876	99.772	101.23	0					118	84	2	0	0	0	0.31496	1	25586	25586		4.756	0	1	404510			24887	548	16478	16638	33521	33521					0.0034805683478680294
YIFCPFFHL	9	Unmodified	_YIFCPFFHL_					0	0	0		ENST00000296812.6_1_5:41927115-41927202:+|nuORF	ENST00000296812.6_1_5:41927115-41927202:+|nuORF	ENST00000296812.6_1_5:41927115-41927202:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	593.2456665039062	2	593.791338	1185.56812	0.15805	9.3849E-05	-1.4959	-0.00088826	-1.3379	-0.00079442	593.7905989103276	52.172	0.44276	52.172	52.015	52.458	0					30	14	3	0	0	0	0.25416	1	11029	11029		5.2307	0	1	158140			24888	5962	16479	16639	33522	33522					-0.017238210437881207
YIFPVWCFH	9	Unmodified	_YIFPVWCFH_					0	0	0			REV__RBL2|p.L207P|1|0.12|ENSG00000103479|chr16:53447089-53447089|T/C|missense_variant	REV__RBL2|p.L207P|1|0.12|ENSG00000103479|chr16:53447089-53447089|T/C|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2889404296875	2	606.288963	1210.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.9	1	100.9	100.4	101.4	0								0	0	0	0.2699	1	25819	25819		5.2307	0.47466	1		+		24889	12973	16480	16640	33523	33523					-0.03348705186567713
YIFPVWCFH	9	Unmodified	_YIFPVWCFH_					0	0	0			REV__RBL2|p.L207P|1|0.12|ENSG00000103479|chr16:53447089-53447089|T/C|missense_variant	REV__RBL2|p.L207P|1|0.12|ENSG00000103479|chr16:53447089-53447089|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8721313476562	2	606.288963	1210.56337	0.7486	0.00045387	1.145	0.00069418	1.8936	0.001148	606.7906488028052	94.314	0.25036	94.352	94.272	94.523	0.038086					11	9	2	0	0	0	0.25416	1	23660	23660		5.2307	0	1	62602	+		24890	12973	16480	16640	33524	33524					-0.03348705186567713
YIFRPGTVL	9	Unmodified	_YIFRPGTVL_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3099975585938	2	533.30821	1064.60187	0.47791	0.00025487	1.1365	0.00060612	1.6144	0.00086099	533.3087473080093	60.147	1.8958	60.147	59.385	61.28	0					177	70	3	0	0	0	0.083504	1	13315	13315		36.044	7.5574	1	890660			24891	5584	16481	16641	33525	33525					0.07214923719629951
YIFRPGTVL	9	Unmodified	_YIFRPGTVL_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3095092773438	2	533.30821	1064.60187	0.36917	0.00019688	1.1262	0.00060061	1.4954	0.00079749	533.3087851877254	60.029	1.9957	60.102	59.33	61.326	0.072338					163	72	3	0	0	0	0.17247	1	13078	13078		21.747	0	1	826400			24892	5584	16481	16641	33526	33526					0.07214923719629951
YIFRPGTVL	9	Unmodified	_YIFRPGTVL_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	533.30821	1064.60187	0.47791	0.00025487	1.1365	0.00060612	1.6144	0.00086099	533.3087473080093	60.147	1.8958	60.147	59.385	61.28	0	0.022619	5.2309E-06	NaN	36.044	177	70	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890660			24893	5584	16481	16641							0.07214923719629951
YIFSLAQLF	9	Unmodified	_YIFSLAQLF_					0	0	0		ENSG00000163933|ENST00000296292|RFT1	ENSG00000163933|ENST00000296292|RFT1	ENSG00000163933|ENST00000296292|RFT1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.3024291992188	2	551.302593	1100.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.046	1	98.046	97.546	98.546	0								0	0	0	0.2428	1	24952	24952		10.824	0	1				24894	3961	16482	16642	33527	33527					0.04436101625447009
YIFYPWASM	9	Unmodified	_YIFYPWASM_					0	0	0			REV__nc|ENSG00000104442|Q9NVT9-2|ARMC1	REV__nc|ENSG00000104442|Q9NVT9-2|ARMC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3185424804688	2	589.272978	1176.5314	0.78326	0.00046155	0.045057	2.6551E-05	0.82832	0.0004881	589.272838782446	79.789	0.46159	79.789	79.59	80.051	0					19	13	2	0	0	0	0.2491	1	19347	19347		8.5933	3.3626	1	122080	+		24895	12769	16483	16643	33528	33528					-0.04980117660397809
YIGADFPWSN	10	Unmodified	_YIGADFPWSN_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.8134765625	2	585.266739	1168.51892	0.57572	0.00033695	-4.074	-0.0023844	-3.4982	-0.0020474	585.2651514539925	87.486	0.076164	87.513	87.456	87.532	0.027573					4	2	2	0	0	0	0.31643	1	21564	21564		9.3831	2.0939	1	23248			24896	4067	16484	16644	33529	33529					-0.05859437799040279
YIGTIIVIIY	10	Unmodified	_YIGTIIVIIY_					0	0	0			REV__ENST00000396045.7_1_7:36894090-36894324:-|nuORF	REV__ENST00000396045.7_1_7:36894090-36894324:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3566284179688	2	584.354825	1166.6951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.595	1	87.595	87.095	88.095	0								0	0	0	0.33341	1	21778	21778		7.9102	0	1		+		24897	11722	16485	16645	33530	33530					0.1184180338218539
YIGTPHFQVF	10	Unmodified	_YIGTPHFQVF_					0	0	0			REV__ENST00000504824.5_1_5:218488-235547:+|nuORF	REV__ENST00000504824.5_1_5:218488-235547:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7694091796875	2	604.808574	1207.60259	0.70372	0.00042562	1.4711	0.00088973	2.1748	0.0013153	604.8091926709848	70.934	0.24413	70.934	70.83	71.074	0					10	7	2	0	0	0	0.28526	1	16692	16692		27.629	3.6082	1	131940	+		24898	8176	16486	16646	33531	33531					0.007097183686482822
YIGTSNWSGN	10	Unmodified	_YIGTSNWSGN_					0	0	0		ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7604370117188	2	549.74617	1097.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.687	1	33.761	33.261	34.261	0.074322								0	0	0	0.33443	1	5273	5273		6.7232	0.99131	1				24899	1454	16487	16647	33532	33532					-0.0670519883851739
YIIEEVTIY	9	Unmodified	_YIIEEVTIY_					0	0	0			REV__ENST00000527503.1_1_11:92881705-92887463:-|nuORF	REV__ENST00000527503.1_1_11:92881705-92887463:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2789916992188	2	571.802623	1141.59069	0.17392	9.9448E-05	-0.29173	-0.00016681	-0.11781	-6.7362E-05	571.8007958300016	60.136	0.63811	60.208	59.911	60.55	0.072342					44	22	3	0	0	0	0.24749	1	13253	13253		9.3474	0	1	98457	+		24900	10511	16488	16648	33533	33533					0.025560568348055313
YIIEQLFIE	9	Unmodified	_YIIEQLFIE_					0	0	0			REV__tr|U7SSH6|U7SSH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01271PE=4SV=1	REV__tr|U7SSH6|U7SSH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01271PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.740478515625	2	584.31844	1166.62233	0.4893	0.00028591	-2.4797	-0.0014489	-1.9904	-0.001163	584.3172686825269	95.973	0.36072	95.973	95.826	96.187	0					27	19	2	0	0	0	0.25579	1	24295	24295		4.3292	0.38484	1	124540	+		24901	13150	16489	16649	33534	33534					0.04568049588738177
YIIGPNYQSF	10	Unmodified	_YIIGPNYQSF_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.2984619140625	2	601.298039	1200.58152	0.45001	0.00027059	-0.0076672	-4.6103E-06	0.44234	0.00026598	601.297804786037	91.052	0.41029	91.052	90.858	91.269	0					30	13	3	0	0	0	0.06954	1	22820	22820		52.268	0	1	408300	+		24902	9569	16490	16650	33535	33535					-0.010742917308789401
YIIGPNYQSF	10	Unmodified	_YIIGPNYQSF_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2982177734375	2	601.298039	1200.58152	0.22129	0.00013306	0.72472	0.00043577	0.94601	0.00056884	601.2982716222102	91.005	0.66681	91.041	90.797	91.464	0.035446					44	23	3	0	0	0	0.11192	1	22672	22672		43.858	0	1	340030	+		24903	9569	16490	16650	33536	33536					-0.010742917308789401
YIIHGPVMAAL	11	Unmodified	_YIIHGPVMAAL_					0	0	0		ENST00000423724.5_1_7:93055670-93072938:-|nuORF;nc|ENSG00000004948|P30988-3|CALCR;nc|ENSG00000004948|P30988-4|CALCR;ENSG00000004948|ENST00000426151|CALCR;nc|ENSG00000004948|P30988-1|CALCR	ENST00000423724.5_1_7:93055670-93072938:-|nuORF	ENST00000423724.5_1_7:93055670-93072938:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3214721679688	2	592.828452	1183.64235	0.40978	0.00024293	-3.5628	-0.0021121	-3.153	-0.0018692	592.8260952248248	81.758	0.89838	81.78	81.449	82.347	0.021866					47	30	2	0	0	0	0.31901	1	19798	19798		15.847	1.0089	1	1028900			24904	342	16491	16651	33537	33537					0.057875220477399125
YIIKWLWD	8	Unmodified	_YIIKWLWD_					0	0	0			REV__ENST00000367350.4_1_1:200583518-200584527:-|nuORF	REV__ENST00000367350.4_1_1:200583518-200584527:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8106079101562	2	568.810585	1135.60662	0.27326	0.00015544	0.026107	1.485E-05	0.29937	0.00017029	568.8105280087435	101.77	0.3944	101.77	101.57	101.96	0					75	30	3	0	0	0	0.52502	1	26108	26108		9.3474	0.75416	1	193470	+		24905	11561	16492	16652	33538	33538					0.04423807862372087
YIIKWLWD	8	Unmodified	_YIIKWLWD_					0	0	0			REV__ENST00000367350.4_1_1:200583518-200584527:-|nuORF	REV__ENST00000367350.4_1_1:200583518-200584527:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	568.810585	1135.60662	0.27326	0.00015544	0.026107	1.485E-05	0.29937	0.00017029	568.8105280087435	101.77	0.3944	101.77	101.57	101.96	0	0.027371	9.61E-05	NaN	9.3474	75	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193470	+		24906	11561	16492	16652							0.04423807862372087
YIIKWLWD	8	Unmodified	_YIIKWLWD_					0	0	0			REV__ENST00000367350.4_1_1:200583518-200584527:-|nuORF	REV__ENST00000367350.4_1_1:200583518-200584527:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.810585	1135.60662	0.40553	0.00023067	-0.16069	-9.1404E-05	0.24483	0.00013926	568.8103869199795	101.68	0.4098	101.72	101.54	101.95	0.042656	-0.027371	-0.00011641	NaN	9.3474	75	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139380	+		24907	11561	16492	16652							0.04423807862372087
YIINPIFPQ	9	Unmodified	_YIINPIFPQ_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.31103515625	2	552.808042	1103.60153	0.58076	0.00032105	-0.89873	-0.00049682	-0.31796	-0.00017577	552.8072777405897	73.893	0.61514	73.942	73.587	74.203	0.048546					36	22	2	0	0	0	0.16036	1	17464	17464		23.148	1.4018	1	230080	+		24908	9613	16493	16653	33539	33539					0.05387503999736509
YIITEYCFY	9	Unmodified	_YIITEYCFY_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA;ENST00000507536.1_1_4:55143544-55147845:+|nuORF;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.299072265625	2	607.775551	1213.53655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.48	1	93.517	93.017	94.017	0.037369								0	0	0	0.23452	1	23403	23403		12.532	0	1				24909	2694	16494	16654	33540	33540					-0.06167858588401032
YIIVGLVIAF	10	Unmodified	_YIIVGLVIAF_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-4|ANO1	REV__nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3438110351562	2	554.344261	1106.67397	0.45903	0.00025446	-0.19348	-0.00010726	0.26555	0.0001472	554.3440542505431	77.126	1.1127	77.126	76.756	77.869	0					81	45	4	0	0	0	0.3939	1	18760	18760		12.532	2.3482	1	1379800	+		24910	9091	16495	16655	33541	33541					0.12489838073315696
YIKETIPL	8	Unmodified	_YIKETIPL_					0	0	0			REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1	REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.78973388671875	2	488.789318	975.564084	0.061794	3.0204E-05	0.20085	9.8174E-05	0.26264	0.00012838	488.78932768843146	89.859	0.30981	89.859	89.674	89.984	0					19	12	2	0	0	0	0.53494	1	22441	22441		4.756	0	1	94252	+		24911	13258	16496	16656	33542	33542					0.075324127341446
YIKGEAQFQ	9	Unmodified	_YIKGEAQFQ_					0	0	0			REV__nc|ENSG00000170954|Q09FC8-4|ZNF415	REV__nc|ENSG00000170954|Q09FC8-4|ZNF415	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7689208984375	2	542.277106	1082.53966	0.077497	4.2025E-05	0.67246	0.00036466	0.74996	0.00040669	542.2773343226398	59.136	0.9742	59.136	58.682	59.656	0					67	36	2	0	0	0	0.065541	2	13196	13196;13242		39.957	18.211	1	289660	+		24912	10234	16497	16657	33543;33544	33543					0.0016915258061089844
YIKHPHLF	8	Unmodified	_YIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2398681640625	2	527.795269	1053.57599	-0.056663	-2.9906E-05	-0.10317	-5.4454E-05	-0.15984	-8.436E-05	527.7951584710222	43.469	0.42427	43.558	43.394	43.818	0.088921					24	15	2	0	0	0	0.34775	1	8185	8185		20.871	2.7362	1	48093			24913	1260	16498	16658	33545	33545					0.051340742679713
YIKHPHLF	8	Unmodified	_YIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	527.795269	1053.57599	-0.12782	-6.7463E-05	-0.39994	-0.00021109	-0.52776	-0.00027855	527.7949769633079	43.733	0.39193	43.733	43.521	43.913	0	0.087393	-0.00010499	NaN	20.871	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39938			24914	1260	16498	16658							0.051340742679713
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.7817687988281	2	478.781828	955.549102	-0.039266	-1.88E-05	-0.02394	-1.1462E-05	-0.063207	-3.0262E-05	478.78169727552967	38.811	0.486	38.811	38.597	39.083	0					45	18	3	0	0	0	0.12247	2	6911	6911;6958		50.855	20.63	1	128140			24915	1124	16499	16659	33546;33547	33546					0.06954965656814238
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	478.7815246582031	2	478.781828	955.549102	0.039929	1.9117E-05	0.14109	6.755E-05	0.18102	8.6668E-05	478.78173512514076	38.707	0.50616	38.794	38.564	39.07	0.08688					40	18	3	0	0	0	0.098215	2	6754	6754;6804		54.774	31.625	1	99888			24916	1124	16499	16659	33548;33549	33548					0.06954965656814238
YIKIAKNCNL	10	Unmodified	_YIKIAKNCNL_					0	0	0			REV__nc|ENSG00000139865|Q86TZ1-2|TTC6	REV__nc|ENSG00000139865|Q86TZ1-2|TTC6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.3356323242188	2	590.331359	1178.64816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.472	1	64.541	64.041	65.041	0.068916								0	0	0	0.32245	1	14579	14579		14.838	4.7643	1		+		24917	9354	16500	16660	33550	33550					0.06598620559384472
YIKNELQTW	9	Unmodified	_YIKNELQTW_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8109130859375	2	597.811313	1193.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.876	1	77.876	77.376	78.376	0								0	0	0	0.18435	1	18816	18816		20.454	3.8877	1				24918	3454	16501	16661	33551	33551					0.019013971604636026
YIKQIKTF	8	Unmodified	_YIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2536010742188	2	520.810585	1039.60662	0.080252	4.1796E-05	-0.013515	-7.0388E-06	0.066737	3.4758E-05	520.8104961091899	46.286	0.22758	46.286	46.156	46.384	0					14	7	3	0	0	0	0.33323	1	9219	9219		32.305	19.774	1	60817			24919	1373	16502	16662	33552	33552					0.08839807862364069
YIKSIILIRK	10	Unmodified	_YIKSIILIRK_					0	0	0		tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.9140625	2	623.915916	1245.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.95	1	107.95	107.45	108.45	0								0	0	0	0.33892	1	27849	27849		1.4819	0.95714	1				24920	13697	16503	16663	33553	33553					0.20420265184407072
YIKYIDPNY	9	Unmodified	_YIKYIDPNY_					0	0	0		GPI-EYS|2|fusion;GPI-EYS|1|fusion;ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS	GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.32177734375	2	594.800414	1187.58628	0.231	0.0001374	0.95696	0.0005692	1.188	0.0007066	595.301853682013	71.448	0.62679	71.506	71.108	71.735	0.058578					28	22	2	0	0	0	0.24929	1	16722	16722		9.3831	1.473	1	99757			24921	7344	16504	16664	33554	33554					-1.4075880699238041E-05
YILAVHSDFF	10	Unmodified	_YILAVHSDFF_					0	0	0		nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2904663085938	2	606.308406	1210.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.182	1	99.182	98.682	99.682	0								0	0	0	0.33092	1	25296	25296		10.824	3.5347	1				24922	354	16505	16665	33555	33555					0.005382986487802555
YILDNNHTHL	10	Unmodified	_YILDNNHTHL_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3082885742188	2	620.309469	1238.60439	-0.062175	-3.8568E-05	-1.7272	-0.0010714	-1.7894	-0.00111	620.3083146007086	94.792	0.61207	94.792	94.545	95.157	0					61	24	4	0	0	0	0.38912	1	23928	23928		13.042	2.2185	1	267890			24923	3212	16506	16666	33556	33556					-0.00537272613382811
YILDNNHTHL	10	Unmodified	_YILDNNHTHL_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.32373046875	2	620.309469	1238.60439	-0.026483	-1.6428E-05	-1.9967	-0.0012386	-2.0232	-0.001255	620.3082910165805	94.754	0.67159	94.792	94.5	95.171	0.038094					60	27	3	0	0	0	0.42901	1	23836	23836		8.7454	0.83525	1	271510			24924	3212	16506	16666	33557	33557					-0.00537272613382811
YILEMYCEE	9	Unmodified	_YILEMYCEE_					0	0	0		ENST00000543754.1_1_12:132425763-132428128:+|nuORF;nc|ENSG00000177192|Q9Y606-2|PUS1;ENSG00000177192|ENST00000376649|PUS1	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7838134765625	2	596.748676	1191.4828	0.43904	0.00026199	3.427	0.0020451	3.8661	0.0023071	596.7507984470496	93.482	0.54996	93.482	93.078	93.628	0					28	21	2	0	0	0	0.2491	1	23607	23607		8.5933	3.8373	1	72723			24925	4695	16507	16667	33558	33558					-0.10528399082431861
YILEQNSSII	10	Unmodified	_YILEQNSSII_					0	0	0			REV__ENSG00000183735|ENST00000331710|TBK1	REV__ENSG00000183735|ENST00000331710|TBK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8157958984375	2	590.316428	1178.6183	0.61425	0.0003626	-1.3399	-0.00079095	-0.72563	-0.00042835	590.8162838955212	82.486	0.72808	82.486	82.2	82.928	0					78	25	5	0	0	0	0.42901	1	20285	20285		8.7454	0.83525	1	556490	+		24926	10609	16508	16668	33559	33559					0.03613960095049151
YILEQNSSII	10	Unmodified	_YILEQNSSII_					0	0	0			REV__ENSG00000183735|ENST00000331710|TBK1	REV__ENSG00000183735|ENST00000331710|TBK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8161010742188	2	590.316428	1178.6183	0.44018	0.00025985	-1.2886	-0.00076067	-0.8484	-0.00050083	590.8164113750188	82.467	0.63142	82.488	82.246	82.877	0.021744					74	22	5	0	0	0	0.38912	1	20098	20098		13.042	0.51092	1	623100	+		24927	10609	16508	16668	33560	33560					0.03613960095049151
YILFKLKRKL	10	Unmodified	_YILFKLKRKL_					0	0	0			REV__ENST00000380503.7_1_16:30007553-30007939:+|nuORF	REV__ENST00000380503.7_1_16:30007553-30007939:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.6171875	3	441.295464	1320.86456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.279	1	70.34	69.84	70.84	0.060562								0	0	0	0.33952	1	16338	16338		0.77653	0	1		+		24928	10178	16509	16669	33561	33561					0.21696544455403455
YILFNQISI	9	Unmodified	_YILFNQISI_					0	0	0			REV__ENST00000354833.7_1_5:70213930-70214023:+|nuORF	REV__ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7948608398438	2	555.813325	1109.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.942	1	63.942	63.442	64.442	0								0	0	0	0.21527	1	14562	14562		15.847	1.0089	1		+		24929	11494	16510	16670	33562	33562					0.061674866541807205
YILGEWDF	8	Unmodified	_YILGEWDF_					0	0	0		ENST00000448997.5_1_3:50608680-50617422:+|nuORF;ENSG00000114735|ENST00000232854|HEMK1	ENST00000448997.5_1_3:50608680-50617422:+|nuORF	ENST00000448997.5_1_3:50608680-50617422:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.2803955078125	2	521.74765	1041.48075	0.39137	0.0002042	3.6266	0.0018922	4.018	0.0020964	521.7490631349227	91.21	0.36487	91.21	91.093	91.458	0					19	12	2	0	0	0	0.35759	1	22863	22863		11.114	0.93107	1	68124			24930	1853	16511	16671	33563	33563					-0.038333237137067044
YILGLFMIYL	10	Unmodified	_YILGLFMIYL_					0	0	0		SLC33A1|p.E281Rfs*119|1|0.1|ENSG00000169359|chr3:155842554-155842555|-/T|frameshift_variant;ENSG00000169359|ENST00000643144|SLC33A1	SLC33A1|p.E281Rfs*119|1|0.1|ENSG00000169359|chr3:155842554-155842555|-/T|frameshift_variant	SLC33A1|p.E281Rfs*119|1|0.1|ENSG00000169359|chr3:155842554-155842555|-/T|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	623.3534545898438	2	623.351228	1244.6879	0.18724	0.00011672	3.4094	0.0021252	3.5966	0.0022419	623.3534385751356	69.063	0.32711	69.063	68.888	69.215	0					13	11	2	0	0	0	0.3939	2	16097	16097;16117		12.532	0	1	115000			24931	4335	16512	16672	33564;33565	33564					0.07534747510135276
YILMKVPK	8	Unmodified	_YILMKVPK_					0	0	0			REV__ENSG00000115806|ENST00000234160|GORASP2	REV__ENSG00000115806|ENST00000234160|GORASP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.3041076660156	2	496.304081	990.59361	0.50531	0.00025079	-0.42316	-0.00021002	0.082142	4.0768E-05	496.30379405199284	78.744	2.0165	78.744	78.153	80.169	0					103	69	2	0	0	0	0.53257	1	19306	19306		6.3541	0	1	494570	+		24932	8795	16513	16673	33566	33566					0.09793653478629949
YILMKVPK	8	Unmodified	_YILMKVPK_					0	0	0			REV__ENSG00000115806|ENST00000234160|GORASP2	REV__ENSG00000115806|ENST00000234160|GORASP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.3039855957031	2	496.304081	990.59361	0.44703	0.00022186	-0.32399	-0.0001608	0.12303	6.1062E-05	496.3037811663986	79.627	0.77665	79.653	79.415	80.191	0.026428					36	27	2	0	0	0	0.53257	1	19161	19161		6.3541	0	1	135190	+		24933	8795	16513	16673	33567	33567					0.09793653478629949
YILPQLSFL	9	Unmodified	_YILPQLSFL_					0	0	0		ENST00000261332.10_1_18:32920623-32924369:-|nuORF	ENST00000261332.10_1_18:32920623-32924369:-|nuORF	ENST00000261332.10_1_18:32920623-32924369:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7841796875	2	547.318243	1092.62193	0.34571	0.00018921	0.31693	0.00017346	0.66264	0.00036267	547.3181943940323	94.602	0.41832	94.64	94.4	94.818	0.038086					30	16	3	0	0	0	0.21603	1	23722	23722		20.454	4.6064	1	89312			24934	5865	16514	16674	33568	33568					0.0793267465955978
YILPQQLLM	9	Unmodified	_YILPQQLLM_					0	0	0			REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2529296875	2	559.817553	1117.62055	0.53741	0.00030085	-3.3966	-0.0019015	-2.8592	-0.0016006	560.3169516436086	85.629	0.24666	85.629	85.482	85.729	0					16	12	2	0	0	0	0.2446	1	21140	21140		11.64	4.3511	1	108070	+		24935	7884	16515	16675	33569	33569					0.06644717299150216
YILPREVTV	9	Unmodified	_YILPREVTV_					0	0	0		TMEM74|p.V198L|1|0.27|ENSG00000164841|chr8:108784507-108784507|C/G|missense_variant	TMEM74|p.V198L|1|0.27|ENSG00000164841|chr8:108784507-108784507|C/G|missense_variant	TMEM74|p.V198L|1|0.27|ENSG00000164841|chr8:108784507-108784507|C/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8038940429688	2	545.318774	1088.623	0.57225	0.00031206	-2.9358	-0.0016009	-2.3635	-0.0012889	545.3169214899956	97.484	0.17726	97.484	97.461	97.638	0					9	7	2	0	0	0	0.25504	1	24795	24795		4.756	0	1	35344			24936	13434	16516	16676	33570	33570					0.08222889028456848
YILRQEEKF	9	Unmodified	_YILRQEEKF_					0	0	0			REV__nc|ENSG00000164221|Q8NEF3|CCDC112	REV__nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.3191528320312	2	613.332413	1224.65027	0.44774	0.00027461	-0.58891	-0.0003612	-0.14117	-8.6582E-05	613.3319721827435	66.675	2.8302	66.675	66.302	69.132	0					312	107	5	0	0	0	0.22344	1	15422	15422		15.847	0.5987	1	9395800	+		24937	9988	16517	16677	33571	33571					0.04693372568817722
YILWLPMYL	9	Unmodified	_YILWLPMYL_					0	0	0		ENST00000409028.8_1_2:101622422-101635471:+|nuORF;ENST00000409320.7_1_2:101622422-101622563:+|nuORF;ENST00000409733.5_1_2:101622422-101622850:+|nuORF	ENST00000409028.8_1_2:101622422-101635471:+|nuORF	ENST00000409028.8_1_2:101622422-101635471:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2924194335938	2	606.330296	1210.64604	0.81202	0.00049235	2.4021	0.0014565	3.2141	0.0019488	606.331437033921	99.119	0.13832	99.119	99.044	99.182	0					12	9	2	0	0	0	0.24749	1	25258	25258		9.3474	1.4373	1	33672			24938	6388	16518	16678	33572	33572					0.049141918216037084
YILWLPMYL	9	Unmodified	_YILWLPMYL_					0	0	0		ENST00000409028.8_1_2:101622422-101635471:+|nuORF;ENST00000409320.7_1_2:101622422-101622563:+|nuORF;ENST00000409733.5_1_2:101622422-101622850:+|nuORF	ENST00000409028.8_1_2:101622422-101635471:+|nuORF	ENST00000409028.8_1_2:101622422-101635471:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	606.330296	1210.64604	0.9361	0.00056759	1.9277	0.0011689	2.8638	0.0017364	606.3309479885564	99.046	0.098305	99.088	99.014	99.112	0.041939	-0.015625	-0.00033764	NaN	9.3474	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58713			24939	6388	16518	16678							0.049141918216037084
YILYLIVV	8	Unmodified	_YILYLIVV_					0	0	0			REV__nc|ENSG00000244694|Q6ZW05-4|PTCHD4	REV__nc|ENSG00000244694|Q6ZW05-4|PTCHD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.3103942871094	2	498.312429	994.610306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.244	1	86.269	85.769	86.769	0.025169								0	0	0	0.38822	1	21206	21206		2.8892	0.58649	1		+		24940	11072	16519	16679	33573	33573					0.1127847763623322
YIMKKPLV	8	Unmodified	_YIMKKPLV_					0	0	0		ENST00000366554.2_1_1:241757348-241757720:-|nuORF	ENST00000366554.2_1_1:241757348-241757720:-|nuORF	ENST00000366554.2_1_1:241757348-241757720:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.3038330078125	2	496.304081	990.59361	0.50531	0.00025079	-0.42316	-0.00021002	0.082142	4.0768E-05	496.30379405199284	78.744	2.0165	78.744	78.153	80.169	0					103	69	2	0	0	0	0.53771	2	19195	19195;19252		2.8892	0	1	494570			24941	6167	16520	16680	33574;33575	33574					0.09793653478629949
YIMKKPLV	8	Unmodified	_YIMKKPLV_					0	0	0		ENST00000366554.2_1_1:241757348-241757720:-|nuORF	ENST00000366554.2_1_1:241757348-241757720:-|nuORF	ENST00000366554.2_1_1:241757348-241757720:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.3040771484375	2	496.304081	990.59361	0.33389	0.00016571	-0.027803	-1.3799E-05	0.30608	0.00015191	496.3039598459567	79.324	0.58887	79.351	78.849	79.437	0.026436					27	20	2	0	0	0	0.53771	2	19052	19052;19102		2.8892	0	1	230810			24942	6167	16520	16680	33576;33577	33576					0.09793653478629949
YINAFLVTTYI	11	Unmodified	_YINAFLVTTYI_					0	0	0			REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.9078063964844	3	439.907823	1316.70164	0.45903	0.00020193	-0.36275	-0.00015958	0.096282	4.2355E-05	439.90754322921447	61.504	1.4712	61.504	61.251	62.722	0					185	66	4	0	0	0	0.37201	1	13975	13975		9.7643	0	1	5024600	+		24943	8072	16521	16681	33578	33578					0.05595696542900441
YINDNEPTF	9	Unmodified	_YINDNEPTF_					0	0	0		CDH10|p.D152Y|1|0.31|ENSG00000040731|chr5:24537452-24537452|C/A|missense_variant	CDH10|p.D152Y|1|0.31|ENSG00000040731|chr5:24537452-24537452|C/A|missense_variant	CDH10|p.D152Y|1|0.31|ENSG00000040731|chr5:24537452-24537452|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.2473754882812	2	556.748379	1111.4822	0.28546	0.00015893	0.52393	0.0002917	0.80939	0.00045063	556.7486669055907	46.514	0.3131	46.514	46.237	46.55	0					17	11	2	0	0	0	0.30005	1	9222	9222		6.7232	2.3939	1	303600			24944	118	16522	16682	33579	33579					-0.06907734415631239
YINDNEPTF	9	Unmodified	_YINDNEPTF_					0	0	0		CDH10|p.D152Y|1|0.31|ENSG00000040731|chr5:24537452-24537452|C/A|missense_variant	CDH10|p.D152Y|1|0.31|ENSG00000040731|chr5:24537452-24537452|C/A|missense_variant	CDH10|p.D152Y|1|0.31|ENSG00000040731|chr5:24537452-24537452|C/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	556.748379	1111.4822	0.36852	0.00020517	0.63203	0.00035188	1.0005	0.00055705	556.748968371408	46.421	0.33041	46.506	46.187	46.518	0.085617	-0.0035775	7.3422E-05	NaN	6.7232	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199720			24945	118	16522	16682							-0.06907734415631239
YINLNYWF	8	Unmodified	_YINLNYWF_					0	0	0			REV__ENST00000602285.1_1_5:176562104-176563088:+|nuORF	REV__ENST00000602285.1_1_5:176562104-176563088:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2980346679688	2	566.776742	1131.53893	0.25818	0.00014633	-2.5754	-0.0014597	-2.3172	-0.0013134	567.2772286952805	82.804	0.6189	82.826	82.424	83.043	0.021751					36	21	2	0	0	0	0.35042	1	20195	20195		19.439	6.9074	1	99090	+		24946	12626	16523	16683	33580	33580					-0.021576420684596087
YIPFFLILF	9	Unmodified	_YIPFFLILF_					0	0	0		ENSG00000128973|ENST00000249806|CLN6;nc|ENSG00000128973|Q9NWW5-2|CLN6	ENSG00000128973|ENST00000249806|CLN6	ENSG00000128973|ENST00000249806|CLN6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2645263671875	2	586.841354	1171.66815	0.74961	0.0004399	-2.9788	-0.0017481	-2.2292	-0.0013082	586.8391854389071	74.628	0.25256	74.676	74.593	74.846	0.048546					12	8	2	0	0	0	0.20644	1	17665	17665		20.871	3.9289	1	83440			24947	2414	16524	16684	33581	33581					0.08918739561659095
YIPGYKKQL	9	Unmodified	_YIPGYKKQL_					0	0	0			REV__ENSG00000148795|ENST00000369887|CYP17A1	REV__ENSG00000148795|ENST00000369887|CYP17A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.252197265625	2	555.321317	1108.62808	0.46391	0.00025762	-0.2944	-0.00016349	0.1695	9.4129E-05	555.3208297245994	79.291	0.16569	79.318	79.249	79.415	0.026436					7	5	2	0	0	0	0.2298	1	19100	19100		16.942	0	1	42692	+		24948	9596	16525	16685	33582	33582					0.07811192891085739
YIPNEFNTT	9	Unmodified	_YIPNEFNTT_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.80078125	2	549.758746	1097.50294	0.25944	0.00014263	2.6232	0.0014421	2.8826	0.0015847	549.7605656603596	36.379	0.11625	36.379	36.312	36.429	0					6	4	2	0	0	0	0.25921	1	6187	6187		1.4819	0	1	12164	+		24949	8239	16526	16686	33583	33583					-0.041911440359626795
YIPQISQYV	9	Unmodified	_YIPQISQYV_					0	0	0			REV__ENSG00000166704|ENST00000551380|ZNF606	REV__ENSG00000166704|ENST00000551380|ZNF606	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.7465209960938	2	555.795132	1109.57571	0.33153	0.00018426	1.3302	0.00073934	1.6618	0.0009236	555.7970420169582	46.064	0.47272	46.15	45.954	46.426	0.085617					24	16	2	0	0	0	0.25644	1	9062	9062		3.9444	0	1	37672	+		24950	10088	16527	16687	33584	33584					0.0253060975749122
YIPVWPHL	8	Unmodified	_YIPVWPHL_					0	0	0		ENST00000425497.5_1_20:48895601-48895982:+|nuORF	ENST00000425497.5_1_20:48895601-48895982:+|nuORF	ENST00000425497.5_1_20:48895601-48895982:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.6475219726562	2	512.78437	1023.55419	0.20515	0.0001052	4.032	0.0020675	4.2371	0.0021727	512.7867738980832	49.576	0.30384	49.653	49.568	49.871	0.076603					13	10	2	0	0	0	0.51202	1	10098	10098		11.114	7.518	1	40572			24951	6467	16528	16688	33585	33585					0.04335269519413032
YIQDAQKRL	9	Unmodified	_YIQDAQKRL_					0	0	0		nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	nc|ENSG00000196547|P49641-1|MAN2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.8174438476562	2	567.81693	1133.61931	0.44788	0.00025431	-0.049919	-2.8345E-05	0.39796	0.00022597	567.8170340922659	53.924	0.77302	53.989	53.626	54.399	0.065128					62	30	3	0	0	0	0.19398	1	11433	11433		19.257	3.4098	1	179370			24952	7583	16529	16689	33586	33586					0.05784219254610434
YIQDVLLQ	8	Unmodified	_YIQDVLLQ_					0	0	0			REV__CREBBP-TRAP1|3|fusion	REV__CREBBP-TRAP1|3|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2843322753906	2	496.276575	990.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.116	1	92.152	91.652	92.652	0.03653								0	0	0	0.38822	1	22989	22989		8.5933	0	1		+		24953	7858	16530	16690	33587	33587					0.04294938211717181
YIQIIKGIF	9	Unmodified	_YIQIIKGIF_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2916870117188	2	547.83406	1093.65357	0.62616	0.00034303	-0.72511	-0.00039724	-0.098948	-5.4207E-05	548.3355990379974	70.603	0.77849	70.663	70.086	70.864	0.060562					55	31	3	0	0	0	0.19069	1	16396	16396		18.135	0	1	313920	+		24954	9808	16531	16691	33588	33588					0.11048667413524527
YIQKHDNVSI	10	Unmodified	_YIQKHDNVSI_					0	0	0		nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5;ENST00000551435.1_1_12:49171156-49171914:-|nuORF;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	nc|ENSG00000173175|O95622-2|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	406.2284851074219	3	406.215539	1215.62479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.275	1	53.275	52.775	53.775	0								0	0	0	0.33687	1	11309	11309		3.8763	0	1				24955	4531	16532	16692	33589	33589					0.025598980464110355
YIQLELPAF	9	Unmodified	_YIQLELPAF_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7561645507812	2	547.30005	1092.58555	0.25923	0.00014188	-3.34	-0.001828	-3.0808	-0.0016861	547.298344550063	48.431	0.35464	48.431	48.251	48.605	0					18	11	2	0	0	0	0.24749	1	9865	9865		9.3474	0.75416	1	50459			24956	4978	16533	16693	33590	33590					0.04295797762847542
YIQRRKEL	8	Unmodified	_YIQRRKEL_					0	0	0			REV__nc|ENSG00000067842|Q16720-8|ATP2B3	REV__nc|ENSG00000067842|Q16720-8|ATP2B3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.325927734375	2	553.327465	1104.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.025	1	59.025	58.525	59.525	0								0	0	0	0.38822	1	13058	13058		10.183	0.10947	1		+		24957	8126	16534	16694	33591	33591					0.09224229354140334
YIQSYDHGT	9	Unmodified	_YIQSYDHGT_					0	0	0		DNAJC1|p.K550Tfs*3|1|0.08|ENSG00000136770|chr10:21756702-21756703|TT/-|frameshift_variant;ENSG00000136770|ENST00000376980|DNAJC1	DNAJC1|p.K550Tfs*3|1|0.08|ENSG00000136770|chr10:21756702-21756703|TT/-|frameshift_variant	DNAJC1|p.K550Tfs*3|1|0.08|ENSG00000136770|chr10:21756702-21756703|TT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2529296875	2	542.240721	1082.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.293	1	61.366	60.866	61.866	0.073421								0	0	0	0.25361	1	13613	13613		8.5933	0.68312	1				24958	290	16535	16695	33592	33592					-0.07104601212813577
YIQVIYIR	8	Unmodified	_YIQVIYIR_					0	0	0		ENST00000546525.5_1_6:169959286-169959583:-|nuORF	ENST00000546525.5_1_6:169959286-169959583:-|nuORF	ENST00000546525.5_1_6:169959286-169959583:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.8126831054688	2	534.316035	1066.61752	0.40546	0.00021664	-3.3418	-0.0017856	-2.9363	-0.0015689	534.314286209792	95.248	0.26146	95.287	95.146	95.407	0.038872					14	10	2	0	0	0	0.3576	1	23979	23979		2.5775	0	1	119680			24959	7078	16536	16696	33593	33593					0.08687210236644205
YIQWELFI	8	Unmodified	_YIQWELFI_					0	0	0			REV__ENST00000534600.5_1_11:43340331-43342446:+|nuORF	REV__ENST00000534600.5_1_11:43340331-43342446:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8027954101562	2	556.294768	1110.57498	0.4482	0.00024933	-3.0717	-0.0017088	-2.6235	-0.0014594	556.2931019866148	77.886	0.38812	77.886	77.685	78.073	0					17	12	2	0	0	0	0.35759	1	18834	18834		9.3474	1.4373	1	135960	+		24960	12376	16537	16697	33594	33594					0.02411815108416704
YIRALRRHL	9	Unmodified	_YIRALRRHL_					0	0	0		ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.3729858398438	2	599.369998	1196.72544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.474	1	98.474	97.974	98.974	0								0	0	0	0.28527	1	25081	25081		2.0598	0.40713	1				24961	4436	16538	16698	33595	33595					0.13495019610604686
YIRDLRQF	8	Unmodified	_YIRDLRQF_					0	0	0			REV__ENST00000494540.5_1_10:38645382-38658918:+|nuORF	REV__ENST00000494540.5_1_10:38645382-38658918:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.29248046875	2	555.806365	1109.59818	0.69054	0.00038381	-0.34625	-0.00019245	0.34429	0.00019136	555.8063242389804	93.542	0.44698	93.542	93.323	93.77	0					30	17	3	0	0	0	0.3576	1	23521	23521		5.2307	0	1	116120	+		24962	12170	16539	16699	33596	33596					0.047762539457608
YIRERLLPIF	10	Unmodified	_YIRERLLPIF_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.9336853027344	3	440.599324	1318.77614	0.64982	0.00028631	-0.64874	-0.00028584	0.0010752	4.7373E-07	440.5990466083866	69.179	1.1318	69.179	68.958	70.09	0					92	39	3	0	0	0	0.44671	2	16128	16128;16173		5.4027	0	1	1396100	+		24963	8467	16540	16700	33597;33598	33597					0.12950504144941988
YIRERLLPIF	10	Unmodified	_YIRERLLPIF_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.9336853027344	3	440.599324	1318.77614	0.64982	0.00028631	-0.64874	-0.00028584	0.0010752	4.7373E-07	440.5990466083866	69.179	1.1318	69.179	68.958	70.09	0					92	39	3	0	0	0	0.31777	1	16128	16128		5.4027	0	1	1396100	+		24964	8467	16540	16700	33599	33599					0.12950504144941988
YIRERLLPIF	10	Unmodified	_YIRERLLPIF_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.59918212890625	3	440.599324	1318.77614	0.079869	3.519E-05	0.1648	7.2612E-05	0.24467	0.0001078	440.59936334742264	69.116	0.95549	69.178	68.901	69.857	0.062126					88	35	3	0	0	0	0.44671	1	15994	15994		5.4027	0	1	947040	+		24965	8467	16540	16700	33600	33600					0.12950504144941988
YIRERLLPIF	10	Unmodified	_YIRERLLPIF_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	440.599324	1318.77614	0.079869	3.519E-05	0.1648	7.2612E-05	0.24467	0.0001078	440.59936334742264	69.116	0.95549	69.178	68.901	69.857	0.062126	-0.00046341	0.00066151	NaN	5.4027	88	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	947040	+		24966	8467	16540	16700							0.12950504144941988
YIRIFKQGP	9	Unmodified	_YIRIFKQGP_					0	0	0			REV__nc|ENSG00000141506|Q8WYR1-2|PIK3R5	REV__nc|ENSG00000141506|Q8WYR1-2|PIK3R5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.8059692382812	2	561.326934	1120.63931	0.17652	9.9086E-05	-1.1271	-0.00063269	-0.95062	-0.00053361	561.8271311650515	46.235	0.1781	46.321	46.215	46.393	0.085617					6	5	2	0	0	0	0.25579	1	9041	9041		4.3292	0.38484	1	36931	+		24967	9403	16541	16701	33601	33601					0.08382014985227215
YIRRWLHF	8	Unmodified	_YIRRWLHF_					0	0	0			REV__ENST00000370008.3_1_1:109351697-109351763:+|nuORF	REV__ENST00000370008.3_1_1:109351697-109351763:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.8327026367188	2	595.832717	1189.65088	-0.16672	-9.9337E-05	-0.94268	-0.00056168	-1.1094	-0.00066102	595.8320629374998	45.822	0.42328	45.822	45.675	46.098	0					21	14	2	0	0	0	0.54097	1	9111	9111		0.69038	0.16561	1	68643	+		24968	11587	16542	16702	33602	33602					0.06364256799224677
YIRYESCLE	9	Unmodified	_YIRYESCLE_					0	0	0		ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7887573242188	2	588.273706	1174.53286	0.47934	0.00028198	-1.3672	-0.00080428	-0.88785	-0.0005223	588.2726239369244	90.764	0.22739	90.764	90.683	90.911	0					11	8	2	0	0	0	0.2491	1	22733	22733		8.5933	2.8329	1	41932			24969	7136	16543	16703	33603	33603					-0.04742528362248777
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.23828125	2	531.237981	1060.46141	0.30657	0.00016286	0.54267	0.00028829	0.84925	0.00045115	531.238300569666	37.46	0.61391	37.46	37.283	37.897	0					47	21	3	0	0	0	0.25468	1	6538	6538		38.151	17.28	1	103020			24970	1437	16544	16704	33604	33604					-0.0664028000462622
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.2384643554688	2	531.237981	1060.46141	0.3906	0.0002075	0.4038	0.00021451	0.7944	0.00042202	531.238165566809	37.378	0.71968	37.462	37.213	37.933	0.084476					47	24	3	0	0	0	0.42348	1	6380	6380		23.148	8.5667	1	60314			24971	1437	16544	16704	33605	33605					-0.0664028000462622
YISESLPEYF	10	Unmodified	_YISESLPEYF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.8768005371094	3	416.532533	1246.57577	0.15	6.248E-05	0.95303	0.00039697	1.103	0.00045945	416.5327666529546	62.084	0.52564	62.157	61.953	62.478	0.073421					28	19	2	0	0	0	0.44253	1	13872	13872		6.1918	0.78914	1	119430			24972	1948	16545	16705	33606	33606					-0.037654350332104514
YISEVHEHD	9	Unmodified	_YISEVHEHD_					0	0	0		ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2921752929688	2	564.751453	1127.48835	0.29873	0.00016871	-1.5402	-0.00086981	-1.2414	-0.0007011	564.7508265707318	94.805	0.3427	94.805	94.656	94.998	0					14	12	2	0	0	0	0.24635	1	23974	23974		10.824	6.8795	1	50837			24973	1262	16546	16706	33607	33607					-0.07029216184082543
YISFQILFH	9	Unmodified	_YISFQILFH_					0	0	0		ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3128662109375	2	584.313492	1166.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.806	1	28.806	28.306	29.306	0								0	0	0	0.29233	1	3948	3948		0.6015	0	1				24974	6728	16547	16707	33608	33608					0.035789063740367055
YISGEFCDCD	10	Unmodified	_YISGEFCDCD_					0	0	0		nc|ENSG00000198542|O95965-2|ITGBL1;nc|ENSG00000198542|O95965-3|ITGBL1;ENSG00000198542|ENST00000376180|ITGBL1	nc|ENSG00000198542|O95965-2|ITGBL1	nc|ENSG00000198542|O95965-2|ITGBL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2055053710938	2	576.204632	1150.39471	0.4106	0.00023659	1.3945	0.00080352	1.8051	0.0010401	576.2054231869747	60.789	0.88136	60.789	60.507	61.389	0					69	31	3	0	0	0	0.46554	2	13638	13638;13690		1.8442	0	1	293820			24975	5374	16548	16708	33609;33610	33609					-0.17447019673022623
YISKAEEYF	9	Unmodified	_YISKAEEYF_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.29443359375	2	575.276772	1148.53899	0.81571	0.00046926	0.72415	0.00041659	1.5399	0.00088585	575.2772307863725	80.412	0.47654	80.412	80.197	80.674	0					27	16	2	0	0	0	0.24365	1	19655	19655		13.508	0	1	168160			24976	2753	16549	16709	33611	33611					-0.02933686859091722
YISKHFYFV	9	Unmodified	_YISKHFYFV_					0	0	0			REV__ENST00000335420.9_1_7:129772789-129772981:+|nuORF	REV__ENST00000335420.9_1_7:129772789-129772981:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8780212402344	3	401.878087	1202.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.827	1	23.926	23.426	24.426	0.099739								0	0	0	0.29303	1	2395	2395		0.20686	0	1		+		24977	11436	16550	16710	33612	33612					0.01922906374034028
YISKSLGSNLL	11	Unmodified	_YISKSLGSNLL_					0	0	0			REV__WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	REV__WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8411254882812	2	597.840071	1193.66559	0.21064	0.00012593	-0.011536	-6.8967E-06	0.19911	0.00011903	597.8401129131925	78.705	1.2089	78.705	78.073	79.282	0					109	41	3	0	0	0	0.36299	1	18920	18920		10.8	1.4164	1	1128400	+		24978	10076	16551	16711	33613	33613					0.07650239366057576
YISKTMCEF	9	Unmodified	_YISKTMCEF_					0	0	0			REV__tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	REV__tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.254638671875	2	561.253928	1120.4933	0.52111	0.00029248	0.021933	1.231E-05	0.54305	0.00030479	561.2538879737518	77.331	0.71194	77.365	77.263	77.975	0.034477					36	28	2	0	0	0	0.20358	1	18499	18499		18.146	3.3081	1	760150	+		24979	13225	16552	16712	33614	33614					-0.06212371637320757
YISNEEVQIW	10	Unmodified	_YISNEEVQIW_					0	0	0			REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.814208984375	2	640.81151	1279.60847	0.07854	5.033E-05	4.0525	0.0025969	4.131	0.0026472	640.8145598129995	86.423	0.29614	86.423	86.289	86.585	0					15	10	2	0	0	0	0.35104	1	21432	21432		17.113	0.96379	1	111760	+		24980	11593	16553	16713	33615	33615					-0.020152279103285764
YISTWKKDFD	10	Unmodified	_YISTWKKDFD_					0	0	0			REV__EGFLAM|p.H193Y|1|0.4|ENSG00000164318|chr5:38370327-38370327|C/T|missense_variant	REV__EGFLAM|p.H193Y|1|0.4|ENSG00000164318|chr5:38370327-38370327|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	434.88250732421875	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.76	1	90.76	90.26	91.26	0								0	0	0	0.33687	1	22735	22735		3.8763	1.2451	1		+		24981	7905	16554	16714	33616	33616					-0.009546375306854316
YITELETL	8	Unmodified	_YITELETL_					0	0	0			REV__ENSG00000176896|ENST00000696128|TCEANC	REV__ENSG00000176896|ENST00000696128|TCEANC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.9296569824219	2	491.260591	980.506628	0.39476	0.00019393	1.2517	0.00061491	1.6465	0.00080884	491.2610736584828	53.43	0.3891	53.496	53.351	53.74	0.065426					27	19	2	0	0	0	0.35759	1	11281	11281		11.64	0.81637	1	194210	+		24982	10413	16555	16715	33617	33617					0.01559525737934564
YITESLDHDL	10	Unmodified	_YITESLDHDL_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2984619140625	2	603.287868	1204.56118	0.34045	0.00020539	1.0393	0.00062702	1.3798	0.00083241	603.2884609425728	56.735	0.18114	56.735	56.65	56.831	0					10	6	2	0	0	0	0.16299	1	12368	12368		37.974	1.9298	1	666720	+		24983	7966	16556	16716	33618	33618					-0.0329150718132496
YITPRRQR	8	Unmodified	_YITPRRQR_					0	0	0			REV__ENST00000450656.5_1_4:57844887-57844959:+|nuORF	REV__ENST00000450656.5_1_4:57844887-57844959:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.31689453125	2	545.317432	1088.62031	0.5359	0.00029224	-1.1708	-0.00063847	-0.63492	-0.00034623	545.3167504304162	97.331	0.36169	97.331	97.077	97.438	0					31	15	3	0	0	0	0.3576	1	24729	24729		2.8892	2.8892	1	112000	+		24984	11925	16557	16717	33619	33619					0.07954478414171717
YITPRRQR	8	Unmodified	_YITPRRQR_					0	0	0			REV__ENST00000450656.5_1_4:57844887-57844959:+|nuORF	REV__ENST00000450656.5_1_4:57844887-57844959:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.317432	1088.62031	0.56793	0.0003097	-1.3122	-0.00071557	-0.74428	-0.00040587	545.3166495723272	97.267	0.46568	97.308	97.166	97.632	0.040855	-0.011353	-5.0095E-05	NaN	2.8892	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126940	+		24985	11925	16557	16717							0.07954478414171717
YITREIWM	8	Unmodified	_YITREIWM_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7598876953125	2	556.283877	1110.5532	0.50261	0.0002796	-0.35688	-0.00019852	0.14574	8.1072E-05	556.2834284693524	76.437	0.78196	76.437	76.331	77.112	0					43	27	2	0	0	0	0.3576	1	18571	18571		8.5933	4.6489	1	241090	+		24986	9635	16558	16718	33620	33620					0.0023468708818654704
YITREIWM	8	Unmodified	_YITREIWM_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	556.283877	1110.5532	0.62356	0.00034688	-1.1401	-0.00063425	-0.51659	-0.00028737	556.2831425220365	76.371	0.71425	76.411	76.332	77.046	0.03923	-0.013156	-0.00055357	NaN	8.5933	31	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317310	+		24987	9635	16558	16718							0.0023468708818654704
YITTNAEKF	9	Unmodified	_YITTNAEKF_					0	0	0			REV__nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3	REV__nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.7772827148438	2	543.776939	1085.53933	0.26355	0.00014331	-0.11187	-6.0834E-05	0.15168	8.2479E-05	543.7768667871305	15.323	0.31949	15.396	15.295	15.615	0.072399					91	40	3	0	0	0	0.33849	1	467	467		1.6526	0.17072	1	104500	+		24988	10620	16559	16719	33621	33621					-2.2671392343909247E-05
YIVALQGLI	9	Unmodified	_YIVALQGLI_					0	0	0			REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF	REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.30560302734375	2	495.305136	988.595718	0.58978	0.00029212	0.017346	8.5915E-06	0.60713	0.00030071	495.3049772444937	82.715	0.42792	82.715	82.595	83.023	0					28	14	3	0	0	0	0.29576	1	20345	20345		7.2892	0	1	175570	+		24989	8091	16560	16720	33622	33622					0.10096405488093296
YIVALQGLI	9	Unmodified	_YIVALQGLI_					0	0	0			REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF	REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.3049621582031	2	495.305136	988.595718	0.41386	0.00020499	0.081307	4.0272E-05	0.49517	0.00024526	495.3051534253282	82.833	0.39957	82.855	82.617	83.017	0.021744					28	13	3	0	0	0	0.25979	1	20197	20197		11.64	0	1	205890	+		24990	8091	16560	16720	33623	33623					0.10096405488093296
YIVEDWQE	8	Unmodified	_YIVEDWQE_					0	0	0		ENSG00000159197|ENST00000290310|KCNE2	ENSG00000159197|ENST00000290310|KCNE2	ENSG00000159197|ENST00000290310|KCNE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7691040039062	2	541.245472	1080.47639	0.50858	0.00027527	1.9857	0.0010748	2.4943	0.00135	541.7493665841913	60.482	0.17056	60.482	60.363	60.533	0					7	5	2	0	0	0	0.35759	1	13502	13502		10.183	0	1	44500			24991	3718	16561	16721	33624	33624					-0.06062832927273121
YIVEDWQEK	9	Unmodified	_YIVEDWQEK_					0	0	0		ENSG00000159197|ENST00000290310|KCNE2	ENSG00000159197|ENST00000290310|KCNE2	ENSG00000159197|ENST00000290310|KCNE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2999267578125	2	605.292953	1208.57135	0.74312	0.00044981	-4.0375	-0.0024439	-3.2944	-0.0019941	605.289873378415	78.461	2.1747	78.491	78.051	80.226	0.030159					151	76	3	0	0	0	0.3182	1	19074	19074		4.3292	0.38484	1	2420100			24992	3718	16562	16722	33625	33625					-0.02458899456087238
YIVELWGSL	9	Unmodified	_YIVELWGSL_					0	0	0		tr|U7SSU1|U7SSU1_FUSNUL-serineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01494PE=3SV=1	tr|U7SSU1|U7SSU1_FUSNUL-serineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01494PE=3SV=1	tr|U7SSU1|U7SSU1_FUSNUL-serineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01494PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.292724609375	2	540.292225	1078.5699	0.67294	0.00036358	-0.047535	-2.5683E-05	0.6254	0.0003379	540.2920821854448	92.579	0.55068	92.615	92.286	92.836	0.03653					42	19	3	0	0	0	0.21398	1	23162	23162		16.942	1.0951	1	155730			24993	13559	16563	16723	33626	33626					0.03375511245803864
YIVGHYLDV	9	Unmodified	_YIVGHYLDV_					0	0	0			REV__ENSG00000247746|ENST00000500968|USP51	REV__ENSG00000247746|ENST00000500968|USP51	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.7815551757812	2	539.782025	1077.5495	0.42051	0.00022698	-0.83182	-0.000449	-0.41131	-0.00022202	539.7815890944909	56.617	0.3626	56.684	56.522	56.884	0.066452					18	12	2	0	0	0	0.20367	2	12204	12204;12210		18.135	1.1927	1	99097	+		24994	11074	16564	16724	33627;33628	33627					0.013823405859739069
YIVGHYLDV	9	Unmodified	_YIVGHYLDV_					0	0	0			REV__ENSG00000247746|ENST00000500968|USP51	REV__ENSG00000247746|ENST00000500968|USP51	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	539.782025	1077.5495	0.21346	0.00011522	-0.19317	-0.00010427	0.020292	1.0953E-05	539.7818774087176	56.688	0.40461	56.688	56.512	56.916	0	0.0021108	0.00041509	NaN	18.135	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120020	+		24995	11074	16564	16724							0.013823405859739069
YIVGHYLDV	9	Unmodified	_YIVGHYLDV_					0	0	0			REV__ENSG00000247746|ENST00000500968|USP51	REV__ENSG00000247746|ENST00000500968|USP51	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	539.782025	1077.5495	0.42051	0.00022698	-0.83182	-0.000449	-0.41131	-0.00022202	539.7815890944909	56.617	0.3626	56.684	56.522	56.884	0.066452	-0.0021108	-0.00027437	NaN	18.135	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99097	+		24996	11074	16564	16724							0.013823405859739069
YIVLAEFVF	9	Unmodified	_YIVLAEFVF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.795654296875	2	550.804968	1099.59538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.213	1	92.249	91.749	92.749	0.03653								0	0	0	0.20792	1	23018	23018		16.942	4.4107	1		+		24997	11085	16565	16725	33629	33629					0.04956985768239974
YIVLGKGSLF	10	Unmodified	_YIVLGKGSLF_					0	0	0			REV__ENSG00000090776|ENST00000204961|EFNB1	REV__ENSG00000090776|ENST00000204961|EFNB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.8057250976562	2	548.823692	1095.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.263	1	79.263	78.763	79.763	0								0	0	0	0.33022	1	19238	19238		11.64	2.2929	1		+		24998	8310	16566	16726	33630	33630					0.0888407703384928
YIVLLTYCI	9	Unmodified	_YIVLLTYCI_					0	0	0			REV__ENSG00000162460|ENST00000375782|TMEM82	REV__ENSG00000162460|ENST00000375782|TMEM82	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7666625976562	2	550.806654	1099.59875	0.34718	0.00019123	-2.1426	-0.0011801	-1.7954	-0.00098892	550.8054370280744	90.354	0.37029	90.354	90.231	90.602	0					21	13	2	0	0	0	0.17491	1	22602	22602		28.487	5.3384	1	55203	+		24999	9888	16567	16727	33631	33631					0.05293912550587265
YIVPNLFSTGV	11	Unmodified	_YIVPNLFSTGV_					0	0	0			REV__ENSG00000279514|ENST00000623907|OR4C16	REV__ENSG00000279514|ENST00000623907|OR4C16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.8131103515625	2	605.329339	1208.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.531	1	39.619	39.119	40.119	0.088562								0	0	0	0.33908	1	7025	7025		1.0715	0.46996	1		+		25000	11149	16568	16728	33632	33632					0.04814854337337238
YIVREPVQV	9	Unmodified	_YIVREPVQV_					0	0	0			REV__nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	REV__nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2798461914062	2	551.816399	1101.61824	0.48774	0.00026915	0.13199	7.2836E-05	0.61974	0.00034198	551.8162836761817	55.72	0.44561	55.785	55.62	56.066	0.065128					22	15	2	0	0	0	0.22247	1	11910	11910		20.415	0	1	141440	+		25001	12838	16569	16729	33633	33633					0.07150004885693306
YIVTARGPPF	10	Unmodified	_YIVTARGPPF_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8295288085938	2	560.811116	1119.60768	0.8743	0.00049032	-1.3778	-0.00077271	-0.50355	-0.00028239	560.8104273718637	80.798	0.43151	80.798	80.625	81.056	0					22	14	2	0	0	0	0.3198	1	19693	19693		20.454	0	1	84460	+		25002	9987	16570	16730	33634	33634					0.052660222312852056
YIVWIKDF	8	Unmodified	_YIVWIKDF_					0	0	0		tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7911376953125	2	542.29731	1082.58007	0.51541	0.00027951	4.3292	0.0023477	4.8446	0.0026272	542.3002124651028	81.635	0.34289	81.656	81.503	81.846	0.021866					23	12	3	0	0	0	0.3576	1	19849	19849		6.3541	0.59368	1	76534			25003	13721	16571	16731	33635	33635					0.042081189710415856
YIVYERGSD	9	Unmodified	_YIVYERGSD_					0	0	0		ENST00000479439.5_1_1:43830699-43831981:-|nuORF	ENST00000479439.5_1_1:43830699-43831981:-|nuORF	ENST00000479439.5_1_1:43830699-43831981:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7623901367188	2	551.264196	1100.51384	0.36377	0.00020053	3.7179	0.0020495	4.0816	0.0022501	551.7684243136055	56.103	0.8089	56.169	55.897	56.706	0.066452					63	30	3	0	0	0	0.25209	1	12062	12062		12.532	0.29089	1	731310			25004	6735	16572	16732	33636	33636					-0.032397416616504415
YIVYHELVM	9	Unmodified	_YIVYHELVM_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38;ENST00000569952.1_1_16:72142713-72143598:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.7966918945312	2	583.79936	1165.58417	0.62817	0.00036672	-4.4483	-0.0025969	-3.8201	-0.0022302	583.7963288889334	88.815	0.33817	88.847	88.639	88.977	0.032265					22	13	2	0	0	0	0.20367	1	21992	21992		18.135	1.1927	1	138890			25005	3030	16573	16733	33637	33637					0.007998404024192496
YIWNTGYLF	9	Unmodified	_YIWNTGYLF_					0	0	0		ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7894897460938	2	588.78985	1175.56515	0.65296	0.00038446	-0.16105	-9.4822E-05	0.49191	0.00028963	588.7892992716504	93.731	0.38642	93.731	93.435	93.822	0					20	14	2	0	0	0	0.24767	1	23611	23611		13.042	2.2185	1	96238			25006	4606	16574	16734	33638	33638					-0.015613728969583462
YIWNTGYLF	9	Unmodified	_YIWNTGYLF_					0	0	0		ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7894897460938	2	588.78985	1175.56515	0.68038	0.0004006	-1.1083	-0.00065256	-0.42794	-0.00025197	588.7887376852307	93.675	0.31605	93.712	93.534	93.85	0.037369					15	11	2	0	0	0	0.24021	1	23470	23470		13.906	1.3745	1	95405			25007	4606	16574	16734	33639	33639					-0.015613728969583462
YIWSVDLGDF	10	Unmodified	_YIWSVDLGDF_					0	0	0			REV__nc|ENSG00000064886|Q15782-5|CHI3L2	REV__nc|ENSG00000064886|Q15782-5|CHI3L2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7903442382812	2	607.790047	1213.56554	0.49518	0.00030097	0.19487	0.00011844	0.69005	0.00041941	607.7900361744594	87.154	1.0217	87.182	86.882	87.903	0.027573					96	41	3	0	0	0	0.37232	1	21550	21550		14.838	0.43289	1	1011800	+		25008	8096	16575	16735	33640	33640					-0.03269997967754534
YIYEELVF	8	Unmodified	_YIYEELVF_					0	0	0		ENST00000436587.6_1_7:7283538-7283649:+|nuORF	ENST00000436587.6_1_7:7283538-7283649:+|nuORF	ENST00000436587.6_1_7:7283538-7283649:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.828857421875	2	538.270958	1074.52736	0.31805	0.0001712	-2.7967	-0.0015054	-2.4787	-0.0013342	538.2690657696331	78.926	0.37509	78.926	78.782	79.157	0					24	12	2	0	0	0	0.34775	1	19121	19121		20.871	6.2895	1	135620			25009	6509	16576	16736	33641	33641					-0.006918838824276463
YIYEELVF	8	Unmodified	_YIYEELVF_					0	0	0		ENST00000436587.6_1_7:7283538-7283649:+|nuORF	ENST00000436587.6_1_7:7283538-7283649:+|nuORF	ENST00000436587.6_1_7:7283538-7283649:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.828857421875	2	538.270958	1074.52736	0.49307	0.0002654	-3.4649	-0.0018651	-2.9719	-0.0015997	538.2686868340458	78.929	0.40853	78.959	78.818	79.226	0.030159					22	13	2	0	0	0	0.35713	1	19000	19000		14.582	4.3983	1	153560			25010	6509	16576	16736	33642	33642					-0.006918838824276463
YIYFTRII	8	Unmodified	_YIYFTRII_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2418212890625	2	544.810585	1087.60662	0.41354	0.0002253	-0.16428	-8.9504E-05	0.24926	0.0001358	544.8104024404831	74.574	0.56912	74.574	74.341	74.91	0					28	20	2	0	0	0	0.35759	1	17776	17776		9.3474	0.75416	1	160760			25011	3361	16577	16737	33643	33643					0.06631807862368078
YIYFTRII	8	Unmodified	_YIYFTRII_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2417602539062	2	544.810585	1087.60662	0.43278	0.00023578	-0.50299	-0.00027403	-0.070207	-3.8249E-05	544.8103462078168	74.549	0.44577	74.598	74.342	74.788	0.048546					24	15	2	0	0	0	0.35759	1	17644	17644		9.3474	0.75416	1	113540			25012	3361	16577	16737	33644	33644					0.06631807862368078
YIYFYEKE	8	Unmodified	_YIYFYEKE_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7874145507812	2	577.773865	1153.53318	0.26012	0.00015029	3.2944	0.0019034	3.5545	0.0020537	578.2767025446891	60.083	0.088554	60.155	60.093	60.182	0.072338					4	2	2	0	0	0	0.3576	1	13236	13236		5.7604	0.52976	1	28219			25013	745	16578	16738	33645	33645					-0.037447853707590184
YIYIENQFF	9	Unmodified	_YIYIENQFF_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.8017578125	2	618.800414	1235.58628	0.033173	2.0527E-05	2.5	0.001547	2.5332	0.0015675	618.8022309873032	55.523	0.28213	55.523	55.38	55.662	0					15	9	2	0	0	0	0.16392	1	12007	12007		22.736	2.3217	1	63749			25014	829	16579	16739	33646	33646					-0.02209407588134127
YIYIENQFF	9	Unmodified	_YIYIENQFF_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	618.800414	1235.58628	0.040477	2.5047E-05	3.2119	0.0019875	3.2523	0.0020125	618.8023944891157	55.468	0.2147	55.533	55.432	55.646	0.065128	0.0051417	0.00038431	NaN	22.736	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75113			25015	829	16579	16739							-0.02209407588134127
YIYNKIALI	9	Unmodified	_YIYNKIALI_					0	0	0		tr|U7T4I2|U7T4I2_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00348PE=4SV=1	tr|U7T4I2|U7T4I2_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00348PE=4SV=1	tr|U7T4I2|U7T4I2_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00348PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.813720703125	2	555.831517	1109.64848	0.70651	0.0003927	-4.2343	-0.0023536	-3.5278	-0.0019609	555.829051084832	65.164	0.36356	65.233	65.061	65.424	0.068909					18	13	2	0	0	0	0.28587	1	14842	14842		8.5933	0	1	106380			25016	13718	16580	16740	33647	33647					0.09804363550870221
YIYPQSLN	8	Unmodified	_YIYPQSLN_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.3468017578125	2	499.2531	996.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.02	1	102.07	101.57	102.57	0.042656								0	0	0	0.38822	1	25999	25999		0.79363	0	1				25017	1964	16581	16741	33648	33648					-0.006739213394325816
YIYPRLYCL	9	Unmodified	_YIYPRLYCL_					0	0	0		nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.8778381347656	3	401.87921	1202.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.017	1	30.093	29.593	30.593	0.075403								0	0	0	0.29233	1	4180	4180		0.26902	0.033176	1				25018	2814	16582	16742	33649	33649					0.022598331564040564
YIYSYFHFVFF	11	Unmodified	_YIYSYFHFVFF_					0	0	0		nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2999572753906	3	511.579818	1531.71762	0.18785	9.6099E-05	-1.6548	-0.00084658	-1.467	-0.00075048	511.9132074906629	59.571	0.51025	59.643	59.457	59.967	0.072338					37	19	2	0	0	0	0.311	1	13123	13123		0.50596	0.051438	1	269620			25019	3997	16583	16743	33650	33650					-0.026965972202333433
YIYVHFTDW	9	Unmodified	_YIYVHFTDW_					0	0	0			REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF	REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2940063476562	2	622.292756	1242.57096	0.17361	0.00010804	1.4755	0.00091817	1.6491	0.0010262	622.2935856034612	75.585	0.96918	75.629	74.752	75.722	0.044037					59	35	3	0	0	0	0.25209	1	17906	17906		12.532	0.29089	1	355820	+		25020	11470	16584	16744	33651	33651					-0.04062274385296405
YKAKYVKTF	9	Unmodified	_YKAKYVKTF_					0	0	0			REV__ENST00000479589.5_1_1:212606272-212619345:+|nuORF	REV__ENST00000479589.5_1_1:212606272-212619345:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.8477783203125	2	574.329142	1146.64373	0.31498	0.0001809	-3.8883	-0.0022331	-3.5733	-0.0020522	574.3269576549545	76.826	0.41122	76.826	76.647	77.059	0					21	14	2	0	0	0	0.25051	1	18450	18450		7.9102	1.187	1	87012	+		25021	8833	16585	16745	33652	33652					0.07627479408120053
YKCVVKSC	8	Unmodified	_YKCVVKSC_					0	0	0		nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENSG00000131061|ENST00000375200|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.54327392578125	2	465.232799	928.451044	-0.14234	-6.6219E-05	-0.78968	-0.00036739	-0.93202	-0.00043361	465.2322905856312	39.704	0.50593	39.793	39.583	40.089	0.088566					28	18	2	0	0	0	0.3576	1	7159	7159		2.5775	0	1	37294			25022	2511	16586	16746	33653	33653					-0.016043022550547903
YKCVVKSC	8	Unmodified	_YKCVVKSC_					0	0	0		nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENSG00000131061|ENST00000375200|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	465.232799	928.451044	-0.045942	-2.1374E-05	-1.0297	-0.00047904	-1.0756	-0.00050042	465.2322635012342	39.821	0.5293	39.821	39.542	40.071	0	0.01421	-9.525E-05	NaN	2.5775	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45502			25023	2511	16586	16746							-0.016043022550547903
YKDLKAGLL	9	Unmodified	_YKDLKAGLL_					0	0	0			REV__nc|ENSG00000164304|Q8TC20-2|CAGE1	REV__nc|ENSG00000164304|Q8TC20-2|CAGE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8079528808594	2	510.808042	1019.60153	0.42219	0.00021566	-0.3735	-0.00019079	0.048689	2.4871E-05	510.8078325366643	63.494	0.49325	63.565	63.365	63.859	0.071018					31	16	3	0	0	0	0.11198	1	14291	14291		29.841	2.2118	1	220680	+		25024	9989	16587	16747	33654	33654					0.09251503999746546
YKDRFTDIL	9	Unmodified	_YKDRFTDIL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2952270507812	2	585.811313	1169.60807	0.72605	0.00042533	2.6665	0.0015621	3.3926	0.0019874	585.8132841179488	104.54	0.14362	104.58	104.53	104.67	0.034004					19	13	2	0	0	0	0.24683	1	26746	26746		11.495	2.1116	1	69879			25025	1635	16588	16748	33655	33655					0.030053971604729668
YKDSVQVF	8	Unmodified	_YKDSVQVF_					0	0	0		ENST00000576107.5_1_16:70497084-70500232:+|nuORF;ENST00000571487.5_1_16:70497084-70500964:+|nuORF;ENST00000464499.5_1_16:70497084-70500964:+|nuORF;ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK	ENST00000576107.5_1_16:70497084-70500232:+|nuORF	ENST00000576107.5_1_16:70497084-70500232:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	493.25286865234375	2	493.2531	984.491647	-0.29648	-0.00014624	0.5101	0.00025161	0.21362	0.00010537	493.25337933823084	40.923	0.43766	40.923	40.759	41.197	0					25	15	2	0	0	0	0.48462	1	7582	7582		14.838	0	1	84133			25026	3656	16589	16749	33656	33656					-0.0012192133942789951
YKEALALTRGG	11	Unmodified	_YKEALALTRGG_					0	0	0			REV__nc|ENSG00000188452|Q49MI3-5|CERKL	REV__nc|ENSG00000188452|Q49MI3-5|CERKL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.83056640625	2	589.830037	1177.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.014	1	30.089	29.589	30.589	0.075403								0	0	0	0.34212	1	4179	4179		0	0	1		+		25027	10771	16590	16750	33657	33657					0.06380488426043485
YKEMTEDYE	9	Unmodified	_YKEMTEDYE_					0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2462158203125	2	604.244812	1206.47507	0.38681	0.00023373	1.9886	0.0012016	2.3754	0.0014353	604.2458046962395	90.996	0.31129	91.031	90.858	91.169	0.035446					16	10	3	0	0	0	0.33978	1	22656	22656		1.4819	0	1	117600	+		25028	10828	16591	16751	33658	33658					-0.11990835078336204
YKEVMKQYP	9	Unmodified	_YKEVMKQYP_					0	0	0		ENST00000478484.5_1_2:27851925-27854072:+|nuORF	ENST00000478484.5_1_2:27851925-27854072:+|nuORF	ENST00000478484.5_1_2:27851925-27854072:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2827758789062	2	593.302267	1184.58998	0.37415	0.00022198	0.76363	0.00045306	1.1378	0.00067504	593.3027211262984	57.297	1.1435	57.365	56.708	57.851	0.068375					97	42	3	0	0	0	0.25979	1	12521	12521		11.64	0	1	1326500			25029	6729	16592	16752	33659	33659					0.005069389141226566
YKFNIRKNQ	9	Unmodified	_YKFNIRKNQ_					0	0	0			REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.8252563476562	2	605.838197	1209.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.325	1	27.325	26.825	27.825	0								0	0	0	0.2927	1	3514	3514		0.52476	0	1		+		25030	13267	16593	16753	33660	33660					0.06539614382859327
YKFQSRRKR	9	Unmodified	_YKFQSRRKR_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.8695068359375	2	634.870363	1267.72617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.6	1	106.63	106.13	107.13	0.025711								0	0	0	0.2927	1	27295	27295		0.52476	0	1				25031	4926	16594	16754	33661	33661					0.10301814259628372
YKFTLPGYY	9	Unmodified	_YKFTLPGYY_					0	0	0			REV__ENSG00000230301|ENST00000615035|OR5H6	REV__ENSG00000230301|ENST00000615035|OR5H6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2930297851562	2	576.292225	1150.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.24	1	106.24	105.74	106.74	0								0	0	0	0.27427	1	27390	27390		4.3292	2.0265	1		+		25032	11038	16595	16755	33662	33662					0.0006351124582124612
YKFVKGSLL	9	Unmodified	_YKFVKGSLL_					0	0	0			REV__tr|U7SSB5|U7SSB5_FUSNUUTP--glucose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01671PE=3SV=1	REV__tr|U7SSB5|U7SSB5_FUSNUUTP--glucose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01671PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2901000976562	2	527.81841	1053.62227	0.14662	7.7391E-05	-2.352	-0.0012414	-2.2053	-0.001164	528.3193115130978	56.36	0.15538	56.427	56.306	56.461	0.066452					8	5	2	0	0	0	0.25281	1	12100	12100		6.7232	2.3939	1	73040	+		25033	13143	16596	16756	33663	33663					0.09760094379430484
YKGDVENTI	9	Unmodified	_YKGDVENTI_					0	0	0		ENSG00000137198|ENST00000259727|GMPR;ENST00000544145.1_1_6:16289789-16295414:+|nuORF;ENST00000543191.5_1_6:16258277-16295414:+|nuORF	ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.2723388671875	2	519.758746	1037.50294	-0.1138	-5.9149E-05	1.5587	0.00081013	1.4449	0.00075098	519.7599890257912	29.089	0.27375	29.089	28.867	29.141	0					25	15	2	0	0	0	0.25162	1	4025	4025		8.1555	0.8663	1	58772			25034	2837	16597	16757	33664	33664					-0.014311440359506378
YKGLEAFGGL	10	Unmodified	_YKGLEAFGGL_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7823486328125	2	527.782025	1053.5495	0.26353	0.00013908	0.52448	0.00027681	0.788	0.00041589	527.782049559065	78.943	0.51461	78.973	78.738	79.253	0.030159					36	17	3	0	0	0	0.32016	1	19053	19053		20.415	1.0526	1	600030			25035	2650	16598	16758	33665	33665					0.024863405860060084
YKGPEAAQCIL	11	Unmodified	_YKGPEAAQCIL_					0	0	0			REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.8049926757812	2	596.805174	1191.59579	0.27041	0.00016138	-1.2789	-0.00076323	-1.0084	-0.00060184	596.804414065974	75.869	1.7065	75.869	75.268	76.975	0					135	83	2	0	0	0	0.19318	1	18199	18199		31.268	5.0002	1	2979000	+		25036	8016	16599	16759	33666	33666					0.0076603742575116485
YKGPEAAQCIL	11	Unmodified	_YKGPEAAQCIL_					0	0	0			REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.80615234375	2	596.805174	1191.59579	0.17729	0.00010581	-0.84406	-0.00050374	-0.66677	-0.00039793	596.8046176432264	75.794	0.99599	75.838	75.266	76.262	0.044037					109	55	2	0	0	0	0.19318	2	18020	18020;18033		31.268	5.0002	1	3697200	+		25037	8016	16599	16759	33667;33668	33667					0.0076603742575116485
YKGPEAAQCIL	11	Unmodified	_YKGPEAAQCIL_					0	0	0			REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	596.805174	1191.59579	0.27041	0.00016138	-1.2789	-0.00076323	-1.0084	-0.00060184	596.804414065974	75.869	1.7065	75.869	75.268	76.975	0	0.015417	-0.00022115	NaN	31.268	135	83	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2979000	+		25038	8016	16599	16759							0.0076603742575116485
YKGPGFEY	8	Unmodified	_YKGPGFEY_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.7257995605469	2	480.726718	959.438883	-0.54472	-0.00026186	-0.13563	-6.5199E-05	-0.68035	-0.00032706	480.7265161145041	21.571	0.67104	21.571	21.381	22.052	0					123	62	3	0	0	0	0.54097	1	1944	1944		0.69038	0	1	92019			25039	4133	16600	16760	33669	33669					-0.04245879402242281
YKGSCFHSII	10	Unmodified	_YKGSCFHSII_					0	0	0		ENST00000452411.1_1_7:98083525-98083918:-|nuORF	ENST00000452411.1_1_7:98083525-98083918:-|nuORF	ENST00000452411.1_1_7:98083525-98083918:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.787109375	2	577.786784	1153.55902	0.40358	0.00023318	-0.19591	-0.0001132	0.20767	0.00011999	577.7866599080116	61.986	2.0865	62.059	61.622	63.708	0.073421					181	85	3	0	0	0	0.44727	1	14232	14232		5.2969	0.96765	1	818670			25040	6570	16601	16761	33670	33670					-0.011622144001421475
YKGYIWNYGA	10	Unmodified	_YKGYIWNYGA_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7946166992188	2	617.798206	1233.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.55	1	57.55	57.05	58.05	0								0	0	0	0.33738	1	12615	12615		3.2813	0.28607	1				25041	4818	16602	16762	33671	33671					-0.02558872011013591
YKHKFFDF	8	Unmodified	_YKHKFFDF_					0	0	0			REV__ENST00000460338.5_1_13:103436847-103443499:-|nuORF	REV__ENST00000460338.5_1_13:103436847-103443499:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.795654296875	2	566.284734	1130.55492	-0.1727	-9.7798E-05	0.94826	0.00053698	0.77556	0.00043919	566.285479560548	32.153	0.1549	32.153	32.028	32.183	0					6	5	2	0	0	0	0.54081	1	4901	4901		0.79363	0	1	20113	+		25042	9192	16603	16763	33672	33672					-0.005139358315318532
YKHKFFDF	8	Unmodified	_YKHKFFDF_					0	0	0			REV__ENST00000460338.5_1_13:103436847-103443499:-|nuORF	REV__ENST00000460338.5_1_13:103436847-103443499:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	566.284734	1130.55492	-0.1727	-9.7798E-05	0.94826	0.00053698	0.77556	0.00043919	566.285479560548	32.153	0.1549	32.153	32.028	32.183	0	0	0	NaN	0.79363	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20113	+		25043	9192	16603	16763							-0.005139358315318532
YKILMNFFD	9	Unmodified	_YKILMNFFD_					0	0	0			REV__nc|ENSG00000160360|Q86YR5|GPSM1	REV__nc|ENSG00000160360|Q86YR5|GPSM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3194580078125	2	595.79936	1189.58417	0.44136	0.00026296	1.885	0.0011231	2.3263	0.001386	595.8010422606715	70.076	0.77475	70.076	69.643	70.418	0					57	28	4	0	0	0	0.29576	1	16434	16434		7.2892	1.5574	1	384830	+		25044	9850	16604	16764	33673	33673					-0.003041595975673772
YKKGTINLN	9	Unmodified	_YKKGTINLN_					0	0	0		tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7793579101562	2	525.800749	1049.58694	0.068807	3.6179E-05	-0.6414	-0.00033725	-0.5726	-0.00030107	525.8003711652951	86.649	0.39734	86.649	86.263	86.66	0					19	14	2	0	0	0	0.23598	1	21372	21372		15.847	0	1	141650			25045	13584	16605	16765	33674	33674					0.06413431851615314
YKLCLGKLLKV	11	Unmodified	_YKLCLGKLLKV_					0	0	0			REV__nc|ENSG00000085831|Q5SRH9-2|TTC39A	REV__nc|ENSG00000085831|Q5SRH9-2|TTC39A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.4032592773438	2	639.404327	1276.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.2	1	105.2	104.7	105.7	0								0	0	0	0.33873	1	27091	27091		1.1933	0	1		+		25046	8267	16606	16766	33675	33675					0.16677503075425193
YKLGKVLVT	9	Unmodified	_YKLGKVLVT_					0	0	0			REV__nc|nan|Q6P1S2-2|C3orf33	REV__nc|nan|Q6P1S2-2|C3orf33	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8260803222656	2	510.826235	1019.63792	0.060771	3.1043E-05	-0.25134	-0.00012839	-0.19057	-9.7349E-05	510.82619957814364	45.824	0.31549	45.91	45.788	46.103	0.085617					27	12	3	0	0	0	0.27332	1	8936	8936		10.074	0.6908	1	55982	+		25047	10363	16607	16767	33676	33676					0.12888380896470153
YKLLGGSVHL	10	Unmodified	_YKLLGGSVHL_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-2|NOX4	REV__nc|ENSG00000086991|Q9NPH5-2|NOX4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.8065185546875	2	543.818941	1085.62333	0.59188	0.00032187	-0.07393	-4.0204E-05	0.51795	0.00028167	543.8189256800277	54.866	0.58529	54.866	54.657	55.243	0					46	21	3	0	0	0	0.31761	1	11890	11890		5.2969	0.96765	1	300140	+		25048	8277	16608	16768	33677	33677					0.08394308748324875
YKLLGGSVHL	10	Unmodified	_YKLLGGSVHL_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-2|NOX4	REV__nc|ENSG00000086991|Q9NPH5-2|NOX4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	543.818941	1085.62333	0.65703	0.00035731	-0.45514	-0.00024751	0.2019	0.00010979	543.8187606671024	54.819	0.50177	54.884	54.714	55.216	0.065128	0.0090979	-0.00022278	NaN	5.2969	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280660	+		25049	8277	16608	16768							0.08394308748324875
YKLLHPDL	8	Unmodified	_YKLLHPDL_					0	0	0			REV__ENST00000511924.1_1_X:118513713-118514064:+|nuORF	REV__ENST00000511924.1_1_X:118513713-118514064:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.7689208984375	2	499.78711	997.559667	0.2989	0.00014939	-0.33178	-0.00016582	-0.032885	-1.6436E-05	499.786604257283	52.188	0.32436	52.255	52.142	52.466	0.067173					20	13	2	0	0	0	0.52924	1	10898	10898		8.5933	2.2392	1	66470	+		25050	12258	16609	16769	33678	33678					0.06078948311221666
YKLLSEKEKE	10	Unmodified	_YKLLSEKEKE_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.901611328125	3	422.902849	1265.68672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.31	1	107.31	106.81	107.81	0								0	0	0	0.3397	1	27695	27695		0.56317	0.057215	1				25051	5384	16610	16770	33679	33679					0.0645020467491122
YKLPTSKKK	9	Unmodified	_YKLPTSKKK_					0	0	0			REV__NSD1|p.L590Ifs*5|1|0.48|ENSG00000165671|chr5:177210166-177210167|TT/-|frameshift_variant	REV__NSD1|p.L590Ifs*5|1|0.48|ENSG00000165671|chr5:177210166-177210167|TT/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.8424072265625	2	546.842416	1091.67028	-0.055012	-3.0083E-05	-0.08305	-4.5415E-05	-0.13806	-7.5498E-05	546.8423233688551	26.401	0.31816	26.492	26.369	26.687	0.091507					43	24	2	0	0	0	0.34754	1	3142	3142		0.45834	0	1	36254	+		25052	10043	16611	16771	33680	33680					0.1281116829943585
YKLYEAEFTS	10	Unmodified	_YKLYEAEFTS_					0	0	0		SLC14A2|p.P28T|1|0.65|ENSG00000132874|chr18:45624746-45624746|C/A|missense_variant;ENSG00000132874|ENST00000255226|SLC14A2	SLC14A2|p.P28T|1|0.65|ENSG00000132874|chr18:45624746-45624746|C/A|missense_variant	SLC14A2|p.P28T|1|0.65|ENSG00000132874|chr18:45624746-45624746|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.7996826171875	2	625.800611	1249.58667	-0.21848	-0.00013673	1.2161	0.00076105	0.99764	0.00062433	625.801033038482	72.583	0.70333	72.583	72.381	73.084	0					47	24	3	0	0	0	0.38104	1	17186	17186		13.906	1.6654	1	271970			25053	2603	16612	16772	33681	33681					-0.028140326588982134
YKNGNQLR	8	Unmodified	_YKNGNQLR_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2535400390625	2	496.76724	991.519927	-0.010175	-5.0546E-06	-0.010541	-5.2363E-06	-0.020716	-1.0291E-05	496.76717064455926	30.713	0.30437	30.713	30.623	30.928	0					21	15	2	0	0	0	0.3576	1	4486	4486		2.3027	0	1	17437			25054	4696	16613	16773	33682	33682					0.02382821360527032
YKNKDNSL	8	Unmodified	_YKNKDNSL_					0	0	0		ENST00000497324.1_1_12:9267959-9268445:-|nuORF	ENST00000497324.1_1_12:9267959-9268445:-|nuORF	ENST00000497324.1_1_12:9267959-9268445:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.25390625	2	491.253631	980.49271	-0.050145	-2.4634E-05	-0.90666	-0.0004454	-0.95681	-0.00047003	491.25350062201125	33.04	0.93028	33.115	32.734	33.665	0.074326					88	38	3	0	0	0	0.53614	1	5183	5183		3.9444	0	1	260890			25055	6844	16614	16774	33683	33683					0.0016829302946916869
YKNNILKER	9	Unmodified	_YKNNILKER_					0	0	0		ENST00000473097.5_1_1:1288733-1289815:-|nuORF;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENST00000473097.5_1_1:1288733-1289815:-|nuORF	ENST00000473097.5_1_1:1288733-1289815:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3379516601562	2	589.33803	1176.66151	0.14437	8.508E-05	0.11325	6.6741E-05	0.25761	0.00015182	589.3380142033578	25.488	0.48188	25.583	25.411	25.892	0.094852					92	40	3	0	0	0	0.33849	1	2907	2907		1.6526	0.32309	1	131720			25056	3836	16615	16775	33684	33684					0.0802419466297124
YKNQTNGKLL	10	Unmodified	_YKNQTNGKLL_					0	0	0		tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8301391601562	2	589.830037	1177.64552	-0.049273	-2.9063E-05	0.10072	5.9409E-05	0.051449	3.0346E-05	589.8301302550763	27.21	2.2695	27.21	27.006	29.275	0					301	142	5	0	0	0	0.46827	1	3902	3902		1.3295	0.87119	1	1644400			25057	13526	16616	16776	33685	33685					0.0638048842608896
YKPHGWNS	8	Unmodified	_YKPHGWNS_					0	0	0			REV__nc|ENSG00000164744|Q8TAQ9-2|SUN3	REV__nc|ENSG00000164744|Q8TAQ9-2|SUN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.7359924316406	2	494.735409	987.456264	0.027504	1.3607E-05	1.7028	0.00084246	1.7303	0.00085606	494.7361764590434	26.259	0.25796	26.35	26.238	26.496	0.091507					29	21	2	0	0	0	0.54097	1	3081	3081		0.69038	0	1	15372	+		25058	10005	16617	16777	33686	33686					-0.03796539076574845
YKQGINIRL	9	Unmodified	_YKQGINIRL_					0	0	0		ENST00000498735.1_1_1:70771606-70781164:-|nuORF;ENST00000490846.5_1_1:70758067-70779428:-|nuORF;nc|ENSG00000118454|Q8N6S4-2|ANKRD13C;ENSG00000118454|ENST00000370944|ANKRD13C	ENST00000498735.1_1_1:70771606-70781164:-|nuORF	ENST00000498735.1_1_1:70771606-70781164:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.796142578125	2	552.82984	1103.64513	0.46546	0.00025732	-0.066936	-3.7004E-05	0.39853	0.00022032	552.8295661995144	50.797	0.71746	50.867	50.666	51.383	0.069874					49	27	3	0	0	0	0.25281	1	10471	10471		6.7232	0	1	383430			25059	2039	16618	16778	33687	33687					0.09745113496887825
YKQLVQYY	8	Unmodified	_YKQLVQYY_					0	0	0			REV__ENSG00000178202|ENST00000323468|POGLUT3	REV__ENSG00000178202|ENST00000323468|POGLUT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.790283203125	2	552.78985	1103.56515	0.44291	0.00024484	0.22539	0.00012459	0.6683	0.00036943	552.7898672351893	58.011	0.6192	58.079	57.825	58.444	0.068375					70	23	4	0	0	0	0.54097	1	12640	12640		0.69038	0	1	885910	+		25060	10441	16619	16779	33688	33688					0.01750627103047009
YKQQYLVI	8	Unmodified	_YKQQYLVI_					0	0	0			REV__ENST00000565288.1_1_15:52844133-52849247:-|nuORF	REV__ENST00000565288.1_1_15:52844133-52849247:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.8011474609375	2	527.800217	1053.58588	0.56772	0.00029964	-0.092454	-4.8797E-05	0.47527	0.00025085	527.8000493745408	66.274	0.78091	66.34	66.025	66.806	0.066872					67	30	4	0	0	0	0.52502	1	15070	15070		9.3474	0	1	765680	+		25061	12497	16620	16780	33689	33689					0.06123217482695509
YKQVCKIA	8	Unmodified	_YKQVCKIA_					0	0	0		nc|ENSG00000197705|Q9P2G3-2|KLHL14;ENSG00000197705|ENST00000359358|KLHL14	nc|ENSG00000197705|Q9P2G3-2|KLHL14	nc|ENSG00000197705|Q9P2G3-2|KLHL14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	476.7767333984375	2	476.767863	951.521173	-0.14469	-6.8984E-05	-3.0304	-0.0014448	-3.1751	-0.0015138	476.7661850548069	49.219	0.59336	49.295	49.155	49.749	0.076607					26	20	2	0	0	0	0.50159	1	9956	9956		12.532	0	1	69123			25062	5315	16621	16781	33690	33690					0.04347319405064809
YKREEGYIL	9	Unmodified	_YKREEGYIL_					0	0	0		ENSG00000164061|ENST00000296452|BSN	ENSG00000164061|ENST00000296452|BSN	ENSG00000164061|ENST00000296452|BSN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8128662109375	2	585.811313	1169.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.87	1	101.87	101.37	102.37	0								0	0	0	0.23593	1	26117	26117		12.241	0.74595	1				25063	3977	16622	16782	33691	33691					0.030053971604729668
YKRRDTFF	8	Unmodified	_YKRRDTFF_					0	0	0			REV__ENST00000466112.5_1_3:52561592-52561760:-|nuORF	REV__ENST00000466112.5_1_3:52561592-52561760:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7991333007812	2	566.79854	1131.58253	0.43949	0.0002491	0.90256	0.00051157	1.3421	0.00076067	566.7990370850092	100.25	0.37955	100.3	100.12	100.5	0.042839					25	19	2	0	0	0	0.53494	1	25476	25476		4.756	0	1	54750	+		25064	11997	16623	16783	33692	33692					0.021999674287144444
YKRRDTFF	8	Unmodified	_YKRRDTFF_					0	0	0			REV__ENST00000466112.5_1_3:52561592-52561760:-|nuORF	REV__ENST00000466112.5_1_3:52561592-52561760:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.80078125	2	566.79854	1131.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.22	1	106.24	105.74	106.74	0.029739								0	0	0	0.38822	1	27189	27189		4.756	0	1		+		25065	11997	16623	16783	33693	33693					0.021999674287144444
YKTLKERQR	9	Unmodified	_YKTLKERQR_					0	0	0		ENSG00000180999|ENST00000367727|C1orf105	ENSG00000180999|ENST00000367727|C1orf105	ENSG00000180999|ENST00000367727|C1orf105	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.3563232421875	2	611.356754	1220.69895	0.062072	3.7948E-05	-0.67924	-0.00041526	-0.61717	-0.00037731	611.3562075436072	86.968	0.8156	86.968	86.66	87.476	0					103	34	4	0	0	0	0.30075	2	21601	21601;21644		6.2058	1.3088	1	1245100			25066	4825	16624	16784	33694;33695	33694					0.09743285928584555
YKTLKERQR	9	Unmodified	_YKTLKERQR_					0	0	0		ENSG00000180999|ENST00000367727|C1orf105	ENSG00000180999|ENST00000367727|C1orf105	ENSG00000180999|ENST00000367727|C1orf105	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3561401367188	2	611.356754	1220.69895	0.14308	8.7473E-05	-0.74227	-0.00045379	-0.59918	-0.00036632	611.3561481973122	86.919	0.80278	86.946	86.653	87.456	0.027573					109	35	4	0	0	0	0.30075	2	21485	21485;21525		6.2058	6.2058	1	1382900			25067	4825	16624	16784	33696;33697	33696					0.09743285928584555
YKTPHIPPH	9	Unmodified	_YKTPHIPPH_					0	0	0			REV__nc|ENSG00000177302|Q13472-3|TOP3A	REV__nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.2954711914062	2	545.295633	1088.57671	-0.26275	-0.00014328	0.29949	0.00016331	0.036733	2.003E-05	545.2956856176245	21.721	1.1536	21.721	21.5	22.654	0					314	100	4	0	0	0	0.34646	1	1880	1880		0.6015	0	1	288050	+		25068	10426	16625	16785	33698	33698					0.03596868917043139
YKTPHIPPH	9	Unmodified	_YKTPHIPPH_					0	0	0			REV__nc|ENSG00000177302|Q13472-3|TOP3A	REV__nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2952270507812	2	545.295633	1088.57671	0.075815	4.1341E-05	0.017555	9.5725E-06	0.093369	5.0914E-05	545.2955532331642	21.502	1.3149	21.604	21.123	22.438	0.10178					377	131	4	0	0	0	0.33704	1	1928	1928		1.8442	0	1	530650	+		25069	10426	16625	16785	33699	33699					0.03596868917043139
YKVKRDQLQ	9	Unmodified	_YKVKRDQLQ_					0	0	0			REV__ENST00000484672.5_1_22:19898593-19905733:-|nuORF	REV__ENST00000484672.5_1_22:19898593-19905733:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3386840820312	2	589.33803	1176.66151	-0.068592	-4.0424E-05	0.26453	0.0001559	0.19594	0.00011548	589.338093690904	25.631	0.62606	25.631	25.464	26.09	0					102	48	3	0	0	0	0.34754	1	2995	2995		0.45834	0	1	110680	+		25070	10636	16626	16786	33700	33700					0.08024194662993978
YKYRLKDW	8	Unmodified	_YKYRLKDW_					0	0	0		tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3173217773438	2	586.316566	1170.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.58	1	99.623	99.123	100.12	0.042839								0	0	0	0.38822	1	25261	25261		2.3027	0	1				25071	13684	16627	16787	33701	33701					0.04009424605555978
YLAAGYFL	8	Unmodified	_YLAAGYFL_					0	0	0			REV__ENSG00000198104|ENST00000641644|OR2T6	REV__ENSG00000198104|ENST00000641644|OR2T6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.73004150390625	2	459.242004	916.469455	-0.15957	-7.3279E-05	-0.48397	-0.00022226	-0.64354	-0.00029554	459.2419500819213	32.905	0.74932	32.98	32.675	33.424	0.074322					45	32	2	0	0	0	0.53771	1	5144	5144		2.8892	0	1	20548	+		25072	10883	16628	16788	33702	33702					0.007878989827986516
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.7373962402344	2	422.73742	843.460287	0.35512	0.00015012	-0.23091	-9.7615E-05	0.12421	5.2509E-05	422.73722988503954	50.653	0.60228	50.653	50.46	51.062	0					41	20	3	0	0	0	0.41225	1	10511	10511		24.674	0	1	180910			25073	569	16629	16789	33703	33703					0.03229550417131577
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	422.73742	843.460287	0.35512	0.00015012	-0.23091	-9.7615E-05	0.12421	5.2509E-05	422.73722988503954	50.653	0.60228	50.653	50.46	51.062	0	-0.0047286	-9.3023E-05	NaN	24.674	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180910			25074	569	16629	16789							0.03229550417131577
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	422.73742	843.460287	0.12375	5.2312E-05	0.24991	0.00010565	0.37365	0.00015796	422.73740456007977	50.59	0.49829	50.663	50.414	50.913	0.07312	0.0047286	0.0003135	NaN	24.674	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161100			25075	569	16629	16789							0.03229550417131577
YLAATYDGQF	10	Unmodified	_YLAATYDGQF_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7496337890625	2	574.766571	1147.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.51	1	80.51	80.01	81.01	0								0	0	0	0.31427	1	19619	19619		15.847	2.8047	1				25076	4890	16630	16790	33704	33704					-0.04926857518921679
YLAEEYHQD	9	Unmodified	_YLAEEYHQD_					0	0	0		tr|U7T2D8|U7T2D8_FUSNUPeptidemethioninesulfoxidereductaseMsrAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrAPE=3SV=1	tr|U7T2D8|U7T2D8_FUSNUPeptidemethioninesulfoxidereductaseMsrAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrAPE=3SV=1	tr|U7T2D8|U7T2D8_FUSNUPeptidemethioninesulfoxidereductaseMsrAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrAPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.8059692382812	2	584.251286	1166.48802	0.34442	0.00020123	1.4434	0.00084333	1.7878	0.0010446	584.7541695460643	73.862	0.20317	73.862	73.716	73.92	0					8	6	2	0	0	0	0.2446	1	17577	17577		11.64	3.047	1	51667			25077	13685	16631	16791	33705	33705					-0.08856635903953247
YLAFARELA	9	Unmodified	_YLAFARELA_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.289794921875	2	527.290017	1052.56548	0.37106	0.00019566	0.07654	4.0359E-05	0.4476	0.00023601	527.2900059709154	74.249	0.71684	74.297	74.071	74.788	0.048546					56	25	3	0	0	0	0.29105	1	17648	17648		7.9102	0.62092	1	657890	+		25078	8803	16632	16792	33706	33706					0.04130046822888289
YLAHWPEYF	9	Unmodified	_YLAHWPEYF_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.5298156738281	3	409.194075	1224.5604	1.0177	0.00041645	1.5492	0.00063392	2.5669	0.0010504	409.52949021606725	80.18	0.79736	80.18	79.958	80.756	0					74	27	4	0	0	0	0.2546	1	19513	19513		12.241	2.6967	1	972750			25079	4545	16633	16793	33707	33707					-0.042902570397245654
YLAKENSNF	9	Unmodified	_YLAKENSNF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7874755859375	2	543.266739	1084.51892	0.4582	0.00024892	-1.0758	-0.00058444	-0.6176	-0.00033552	543.7679164786182	60.621	0.90946	60.621	60.396	61.305	0					42	32	2	0	0	0	0.25051	1	13645	13645		7.9102	0	1	170700			25080	3593	16634	16794	33708	33708					-0.019954377990416106
YLALYSPDVI	10	Unmodified	_YLALYSPDVI_					0	0	0		ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2;ENST00000478285.1_1_6:24654627-24658985:-|nuORF;nc|ENSG00000111802|O95551-3|TDP2	ENSG00000111802|ENST00000378198|TDP2	ENSG00000111802|ENST00000378198|TDP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7649536132812	2	577.310615	1152.60668	0.38742	0.00022366	0.78857	0.00045525	1.176	0.00067891	577.3110980984119	94.669	0.52318	94.669	94.451	94.974	0					33	21	3	0	0	0	0.31456	1	23947	23947		14.838	0	1	129830			25081	1728	16635	16795	33709	33709					0.036477630716944986
YLAMLLFMLF	10	Unmodified	_YLAMLLFMLF_					0	0	0		nc|ENSG00000188869|Q7Z5M5-2|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant;ENSG00000188869|ENST00000359440|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.5634460449219	3	421.228963	1260.66506	0.88579	0.00037312	-0.4225	-0.00017797	0.46329	0.00019515	421.2285988465467	65.901	0.74199	65.901	65.645	66.387	0					59	25	3	0	0	0	0.3939	1	15138	15138		7.1017	1.3183	1	373150			25082	5177	16636	16796	33710	33710					0.04515405120992
YLAPVNYGLL	10	Unmodified	_YLAPVNYGLL_					0	0	0			REV__ENSG00000111676|ENST00000396684|ATN1	REV__ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.802978515625	2	561.813325	1121.6121	0.46586	0.00026173	0.33848	0.00019016	0.80434	0.00045189	561.8134370701209	74.937	0.42335	74.981	74.812	75.235	0.044037					30	15	3	0	0	0	0.24532	2	17769	17769;17804		28.487	3.6117	1	435090	+		25083	8692	16637	16797	33711;33712	33711					0.05615486654187407
YLARELNLWF	10	Unmodified	_YLARELNLWF_					0	0	0			REV__DYNC1H1-HSP90AA1|1|fusion	REV__DYNC1H1-HSP90AA1|1|fusion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	441.68841552734375	3	442.239796	1323.69756	-0.10537	-4.6599E-05	-2.7677	-0.001224	-2.8731	-0.0012706	442.238380398952	33.692	0.14148	33.766	33.665	33.806	0.074322					7	5	2	0	0	0	0.31852	1	5285	5285		0.69767	0.19171	1	11962	+		25084	7902	16638	16798	33713	33713					0.048656518398274784
YLCEPNFYF	9	Unmodified	_YLCEPNFYF_					0	0	0			REV__ENSG00000172986|ENST00000389617|GXYLT2	REV__ENSG00000172986|ENST00000389617|GXYLT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3579711914062	2	598.260068	1194.50558	0.1413	8.4531E-05	3.6361	0.0021753	3.7774	0.0022599	598.2618684025716	87.026	0.21889	87.026	86.992	87.211	0					15	9	2	0	0	0	0.25051	1	21604	21604		7.9102	4.3137	1	82900	+		25085	10304	16639	16799	33714	33714					-0.08389011902659149
YLCEPNFYF	9	Unmodified	_YLCEPNFYF_					0	0	0			REV__ENSG00000172986|ENST00000389617|GXYLT2	REV__ENSG00000172986|ENST00000389617|GXYLT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.856201171875	2	598.260068	1194.50558	0.063035	3.7711E-05	3.3454	0.0020014	3.4085	0.0020392	598.2622275553673	87.021	0.31151	87.049	86.944	87.256	0.027573					18	13	2	0	0	0	0.24263	1	21457	21457		7.9102	3.9658	1	135670	+		25086	10304	16639	16799	33715	33715					-0.08389011902659149
YLCMLYALF	9	Unmodified	_YLCMLYALF_					0	0	0		ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.3414916992188	2	568.779582	1135.54461	0.40366	0.00022959	-1.3078	-0.00074386	-0.90416	-0.00051427	568.7784552810415	75.148	0.41565	75.148	74.988	75.404	0					23	15	2	0	0	0	0.237	1	17961	17961		14.582	0	1	196310			25087	5092	16640	16800	33716	33716					-0.017740028726393575
YLCRFERDF	9	Unmodified	_YLCRFERDF_					0	0	0			REV__ENSG00000125998|ENST00000374408|FAM83C	REV__ENSG00000125998|ENST00000374408|FAM83C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.24322509765625	3	416.865852	1247.57573	0.22064	9.1978E-05	2.1772	0.0009076	2.3978	0.00099957	416.8667444553227	46.217	0.080799	46.217	46.156	46.237	0					4	2	2	0	0	0	0.25851	1	9158	9158		2.4985	0.75621	1	20547	+		25088	8982	16641	16801	33717	33717					-0.038157135141773324
YLCSGGMMNLI	11	Unmodified	_YLCSGGMMNLI_					0	0	0		ENST00000604849.1_2_X:53172048-53172363:+|nuORF	ENST00000604849.1_2_X:53172048-53172363:+|nuORF	ENST00000604849.1_2_X:53172048-53172363:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2743530273438	2	601.274338	1200.53412	0.34538	0.00020767	1.0691	0.00064284	1.4145	0.00085051	601.2748496765848	69.375	0.46683	69.437	69.258	69.724	0.062126					40	16	3	0	0	0	0.32422	1	16061	16061		15.248	3.0078	1	536700			25089	7305	16642	16802	33718	33718					-0.05812353589340091
YLCSGGMMNLI	11	Unmodified	_YLCSGGMMNLI_					0	0	0		ENST00000604849.1_2_X:53172048-53172363:+|nuORF	ENST00000604849.1_2_X:53172048-53172363:+|nuORF	ENST00000604849.1_2_X:53172048-53172363:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	601.274338	1200.53412	0.61211	0.00036804	0.97335	0.00058525	1.5855	0.0009533	601.2745943743934	69.458	0.6367	69.458	69.269	69.905	0	0.01028	-6.5703E-05	NaN	15.248	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249510			25090	7305	16642	16802							-0.05812353589340091
YLCVCCFEY	9	Unmodified	_YLCVCCFEY_					0	0	0		DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2741088867188	2	571.721407	1141.42826	0.68379	0.00039094	0.22086	0.00012627	0.90465	0.00051721	572.2230285709505	81.904	0.2627	81.904	81.746	82.008	0					14	8	3	0	0	0	0.25416	1	19995	19995		5.2307	0	1	76123			25091	295	16643	16803	33719	33719					-0.13679689434843567
YLCVCCFEY	9	Unmodified	_YLCVCCFEY_					0	0	0		DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	571.721407	1141.42826	0.34954	0.00019984	1.013	0.00057915	1.3625	0.00077899	571.7219539274298	81.934	0.30557	81.955	81.763	82.069	0.021866	0.025679	0.00057754	NaN	5.2307	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47515			25092	295	16643	16803							-0.13679689434843567
YLCWVLFF	8	Unmodified	_YLCWVLFF_					0	0	0		ENST00000523606.1_1_5:162945344-162945401:+|nuORF	ENST00000523606.1_1_5:162945344-162945401:+|nuORF	ENST00000523606.1_1_5:162945344-162945401:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7771606445312	2	545.775157	1089.53576	0.46507	0.00025382	2.5658	0.0014004	3.0309	0.0016542	545.7763743958651	99.872	0.25923	99.872	99.817	100.08	0					19	13	2	0	0	0	0.32787	1	25517	25517		32.454	3.9668	1	192240			25093	6975	16644	16804	33720	33720					-0.005426084467899273
YLDDLTDMD	9	Unmodified	_YLDDLTDMD_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693-6|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2781982421875	2	550.726255	1099.43796	0.19727	0.00010864	1.9985	0.0011006	2.1958	0.0012093	550.727105208581	72.01	0.47301	72.01	71.755	72.228	0					24	16	2	0	0	0	0.2491	1	16943	16943		8.5933	0.68312	1	143790			25094	2661	16645	16805	33721	33721					-0.10778506624114925
YLDDRNTF	8	Unmodified	_YLDDRNTF_					0	0	0		ENSG00000141510|ENST00000269305|TP53;TP53|p.D281Efs*26|1|0.76|ENSG00000141510|chr17:7673777-7673778|-/TCTC|frameshift_variant;nc|ENSG00000141510|P04637-4|TP53;TP53|p.S260Pfs*95|1|0.61|ENSG00000141510|chr17:7674185-7674186|-/GTCTTCCAGTGTGATGATGGTGAGGATGG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R290Sfs*56|1|0.38|ENSG00000141510|chr17:7673752-7673753|-/GA|frameshift_variant;TP53|p.S260Pfs*85|1|0.33|ENSG00000141510|chr17:7674185-7674185|A/-|frameshift_variant;TP53|p.R342Efs*3|1|0.39|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.L330Ffs*15|1|0.28|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant;TP53|p.E294Sfs*51|1|0.57|ENSG00000141510|chr17:7673744-7673744|T/-|frameshift_variant;TP53|p.H297Pfs*48|1|0.47|ENSG00000141510|chr17:7673730-7673730|T/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.K320Nfs*19|1|0.21|ENSG00000141510|chr17:7673550-7673568|TTCTCCATCCAGTGGTTTC/-|frameshift_variant;TP53|p.T329Hfs*8|2|0.79|ENSG00000141510|chr17:7673544-7673545|-/A|frameshift_variant;TP53|p.Q317Pfs*20|1|0.41|ENSG00000141510|chr17:7673578-7673579|-/G|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-5|TP53;TP53|p.T256Hfs*8|1|0.39|ENSG00000141510|chr17:7674198-7674199|-/A|frameshift_variant;TP53|p.P250Hfs*13|1|0.5|ENSG00000141510|chr17:7674213-7674214|GG/-|frameshift_variant;TP53|p.S240Gfs*20|1|0.18|ENSG00000141510|chr17:7674236-7674246|TGCAGGAACTG/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H214Qfs*33|1|0.55|ENSG00000141510|chr17:7674889-7674889|A/-|frameshift_variant;TP53|p.C238Lfs*9|1|0.33|ENSG00000141510|chr17:7674250-7674250|C/-|frameshift_variant;TP53|p.C229Yfs*10|1|0.38|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant;TP53|p.P223Afs*3|1|0.3|ENSG00000141510|chr17:7674865-7674866|-/GGCT|frameshift_variant;TP53|p.E224*|1|0.31|ENSG00000141510|chr17:7674862-7674863|-/T|frameshift_variant;TP53|p.S215Kfs*7|1|0.43|ENSG00000141510|chr17:7674887-7674888|-/T|frameshift_variant;TP53|p.P219Lfs*2|1|0.53|ENSG00000141510|chr17:7674874-7674875|GG/-|frameshift_variant;TP53|p.R213L|1|0.38|ENSG00000141510|chr17:7674893-7674893|C/A|missense_variant;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;TP53|p.R213P|1|0.27|ENSG00000141510|chr17:7674893-7674893|C/G|missense_variant	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.328857421875	2	522.243264	1042.47197	0.33418	0.00017452	-1.7466	-0.00091217	-1.4125	-0.00073765	522.744325998279	79.145	0.10936	79.145	79.047	79.157	0					5	3	2	0	0	0	0.3576	1	19189	19189		4.756	0.42677	1	40060			25095	3063	16646	16806	33722	33722					-0.047562973502181194
YLDEQRAV	8	Unmodified	_YLDEQRAV_					0	0	0		ENSG00000081791|ENST00000432126|DELE1	ENSG00000081791|ENST00000432126|DELE1	ENSG00000081791|ENST00000432126|DELE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2545166015625	2	497.253631	992.49271	-0.31685	-0.00015756	-1.9941	-0.00099157	-2.3109	-0.0011491	497.2519032107246	41.099	0.53692	41.099	40.787	41.324	0					24	18	2	0	0	0	0.50159	1	7609	7609		12.532	3.9383	1	58577			25096	909	16647	16807	33723	33723					-0.003837069705241447
YLDHSILLCS	10	Unmodified	_YLDHSILLCS_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.32080078125	2	582.291899	1162.56925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.43	1	105.46	104.96	105.96	0.029739								0	0	0	0.3327	1	26979	26979		8.7454	0.58988	1				25097	2765	16648	16808	33724	33724					-0.005536514655204883
YLDIQPSPDQS	11	Unmodified	_YLDIQPSPDQS_					0	0	0		nc|ENSG00000069667|P35398-4|RORA;ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-3|RORA;nc|ENSG00000069667|P35398-1|RORA	nc|ENSG00000069667|P35398-4|RORA	nc|ENSG00000069667|P35398-4|RORA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.869384765625	3	421.534825	1261.58265	0.88844	0.00037451	-0.44389	-0.00018711	0.44455	0.0001874	421.8689330012449	65.922	0.5701	65.922	65.732	66.302	0					30	19	2	0	0	0	0.33846	1	15188	15188		11.065	3.9636	1	204840			25098	747	16649	16809	33725	33725					-0.03768122152609976
YLDKQAPSLF	10	Unmodified	_YLDKQAPSLF_					0	0	0			REV__ENST00000599671.1_1_19:52399719-52400225:-|nuORF	REV__ENST00000599671.1_1_19:52399719-52400225:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.29638671875	2	591.313689	1180.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.36	1	102.4	101.9	102.9	0.040916								0	0	0	0.33395	1	26101	26101		7.2892	0.56607	1		+		25099	10868	16650	16810	33726	33726					0.029742813032271442
YLDLKKEF	8	Unmodified	_YLDLKKEF_					0	0	0		tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.2922973632812	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.241	1	99.241	98.741	99.741	0								0	0	0	0.38822	1	25315	25315		7.2892	0	1				25100	13494	16651	16811	33727	33727					0.04479511245813228
YLDMHSLPHV	10	Unmodified	_YLDMHSLPHV_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.2999267578125	2	606.297516	1210.58048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.71	1	106.71	106.21	107.21	0								0	0	0	0.33711	1	27525	27525		3.5965	0.31518	1				25101	987	16652	16812	33728	33728					-0.01638829371427164
YLDPDVHLE	9	Unmodified	_YLDPDVHLE_					0	0	0			REV__ENSG00000181804|ENST00000316549|SLC9A9	REV__ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.7666625976562	2	550.766571	1099.51859	0.30464	0.00016779	-0.46427	-0.00025571	-0.15963	-8.792E-05	550.7664349591886	90.118	0.94753	90.118	89.86	90.808	0					84	37	3	0	0	0	0.25209	1	22602	22602		12.532	0.89125	1	2719000	+		25102	10543	16653	16813	33729	33729					-0.027188575189029507
YLDRFYHLT	9	Unmodified	_YLDRFYHLT_					0	0	0			REV__ENSG00000080511|ENST00000591589|RDH8	REV__ENSG00000080511|ENST00000591589|RDH8	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	614.7930908203125	2	614.31148	1226.60841	0.10191	6.2604E-05	-1.2221	-0.00075072	-1.1201	-0.00068812	614.3111654766458	75.084	0.16567	75.128	75.024	75.19	0.044037					6	5	2	0	0	0	0.25051	1	17771	17771		7.9102	1.187	1	261670	+		25103	8228	16654	16814	33730	33730					0.0041681688030621444
YLDRSPSACK	10	Unmodified	_YLDRSPSACK_					0	0	0		ENSG00000166444|ENST00000313726|DENND2B	ENSG00000166444|ENST00000313726|DENND2B	ENSG00000166444|ENST00000313726|DENND2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.7905883789062	2	570.279323	1138.54409	0.64389	0.0003672	-4.2735	-0.0024371	-3.6296	-0.0020699	570.277678096579	80.668	0.75694	80.691	80.353	81.11	0.023613					37	16	3	0	0	0	0.41688	1	19476	19476		10.074	0.6908	1	136440			25104	4157	16655	16815	33731	33731					-0.019637062681340467
YLDRVRSL	8	Unmodified	_YLDRVRSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000510337.1_1_5:122971848-122972142:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2924499511719	2	511.293091	1020.57163	-0.36245	-0.00018532	-0.60273	-0.00030817	-0.96518	-0.00049349	511.292740288758	41.398	0.8072	41.487	41.265	42.072	0.089767					111	31	5	0	0	0	0.38985	1	7557	7557		27.629	0	1	589460			25105	1689;6908	16656	16816	33732	33732					0.06216565054421608
YLDRVRSL	8	Unmodified	_YLDRVRSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000510337.1_1_5:122971848-122972142:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	511.293091	1020.57163	-0.53404	-0.00027305	-0.60271	-0.00030816	-1.1368	-0.00058121	511.29280045342705	41.469	1.14	41.469	41.225	42.365	0	-0.0089718	1.0631E-08	NaN	27.629	130	40	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611060			25106	1689;6908	16656	16816							0.06216565054421608
YLDWILFF	8	Unmodified	_YLDWILFF_					0	0	0		ENST00000394974.2_1_1:58694357-58694534:-|nuORF	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	ENST00000394974.2_1_1:58694357-58694534:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7994995117188	2	558.791861	1115.56917	0.56234	0.00031423	0.12904	7.2109E-05	0.69138	0.00038634	560.2975341710247	71.285	0.38513	71.344	71.157	71.542	0.058578					46	13	5	0	0	0	0.53257	1	16637	16637		6.3541	1.0572	1	138230			25107	6331	16657	16817	33733	33733					0.01600716596772145
YLEDEFLLPG	10	Unmodified	_YLEDEFLLPG_					0	0	0			REV__ENST00000606388.5_1_6:146204418-146204589:+|nuORF	REV__ENST00000606388.5_1_6:146204418-146204589:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.340576171875	2	598.297704	1194.58086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.187	1	99.23	98.73	99.73	0.042839								0	0	0	0.33877	1	25141	25141		1.6526	0.32309	1		+		25108	12642	16658	16818	33734	33734					-0.008651311705762055
YLEELEDIT	9	Unmodified	_YLEELEDIT_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.3067016601562	2	562.771519	1123.52849	0.17827	0.00010033	2.1406	0.0012047	2.3189	0.001305	562.772799419757	56.701	0.28681	56.701	56.57	56.857	0					18	10	2	0	0	0	0.25051	1	12327	12327		7.9102	2.1497	1	83751	+		25109	8640	16659	16819	33735	33735					-0.028337143041881063
YLEFVTEF	8	Unmodified	_YLEFVTEF_					0	0	0			REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF	REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.271728515625	2	524.255308	1046.49606	-0.033631	-1.7631E-05	0.24738	0.00012969	0.21375	0.00011206	524.2553828771516	72.656	0.78007	72.656	72.103	72.883	0					45	26	2	0	0	0	0.35759	1	17054	17054		10.183	2.2732	1	98189	+		25110	12511	16660	16820	33736	33736					-0.025324569165150024
YLEIIQFIDY	10	Unmodified	_YLEIIQFIDY_					0	0	0			REV__ENSG00000186103|ENST00000334384|ARGFX	REV__ENSG00000186103|ENST00000334384|ARGFX	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.57135009765625	3	439.563945	1315.67001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.1	1	49.176	48.676	49.676	0.076607								0	0	0	0.33556	1	9908	9908		5.4027	1.8157	1		+		25111	10695	16661	16821	33737	33737					0.024797037889584317
YLEKFYQL	8	Unmodified	_YLEKFYQL_					0	0	0		ENST00000528662.6_1_11:102584081-102593757:-|nuORF;ENSG00000118113|ENST00000236826|MMP8	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2933959960938	2	552.292225	1102.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.34	1	100.38	99.878	100.88	0.042839								0	0	0	0.38822	1	25493	25493		2.3027	0	1				25112	2026	16662	16822	33738	33738					0.02271511245817237
YLEKKRLCF	9	Unmodified	_YLEKKRLCF_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3341674804688	2	600.333901	1198.65325	0.47691	0.00028631	0.22144	0.00013294	0.69835	0.00041924	600.333882791866	88.093	1.9448	88.093	87.402	89.347	0					202	75	3	0	0	0	0.32112	1	22058	22058		3.9444	0.3479	1	484250			25113	532	16663	16823	33739	33739					0.06186924422013362
YLEKTTHVA	9	Unmodified	_YLEKTTHVA_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7327880859375	2	531.284931	1060.55531	0.37989	0.00020183	-1.0624	-0.00056445	-0.68254	-0.00036262	531.2844177280684	50.503	0.31235	50.576	50.385	50.697	0.07312					14	10	2	0	0	0	0.25644	1	10351	10351		3.9444	2.2918	1	76041	+		25114	8852	16664	16824	33740	33740					0.02745439097657254
YLENGKETL	9	Unmodified	_YLENGKETL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000204642|P30511-2|HLA-F;ENSG00000204525|ENST00000376228|HLA-C;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.7742309570312	2	533.774396	1065.53424	0.26619	0.00014208	-0.17858	-9.5323E-05	0.087605	4.6761E-05	533.7741269609868	36.665	0.78981	36.665	36.46	37.25	0					59	30	3	0	0	0	0.064247	1	6285	6285		40.239	12.61	1	181460			25115	5489;5476;5532	16665	16825	33741	33741					0.004094289981594557
YLENGKETL	9	Unmodified	_YLENGKETL_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000204642|P30511-2|HLA-F;ENSG00000204525|ENST00000376228|HLA-C;ENST00000496081.5_1_6:29910330-29912419:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7745361328125	2	533.774396	1065.53424	0.426	0.00022739	-0.09556	-5.1007E-05	0.33044	0.00017638	533.7742543195704	36.595	0.86777	36.676	36.477	37.345	0.081715					59	34	3	0	0	0	0.11174	1	6139	6139		43.772	13.136	1	153470			25116	5489;5476;5532	16665	16825	33742	33742					0.004094289981594557
YLENQTFRF	9	Unmodified	_YLENQTFRF_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	407.22772216796875	3	406.536501	1216.58767	0.57919	0.00023546	1.4958	0.00060808	2.075	0.00084355	406.5365448870396	62.434	0.085232	62.434	62.365	62.451	0					4	2	2	0	0	0	0.25787	1	14093	14093		2.9952	0	1	20694			25117	737	16666	16826	33743	33743					-0.011957734993529812
YLENREKEE	9	Unmodified	_YLENREKEE_					0	0	0		ENST00000565598.2_1_16:53404185-53404910:-|nuORF;ENST00000565421.1_1_16:53404024-53404910:-|nuORF	ENST00000565598.2_1_16:53404185-53404910:-|nuORF	ENST00000565598.2_1_16:53404185-53404910:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2999267578125	2	605.290942	1208.56733	0.74313	0.00044981	-0.71453	-0.0004325	0.028597	1.731E-05	605.289873378415	78.461	2.1747	78.491	78.051	80.226	0.030159					151	76	3	0	0	0	0.33356	1	19285	19285		2.3027	0	1	2420100			25118	7178	16667	16827	33744	33744					-0.0286098894978295
YLEQLRKN	8	Unmodified	_YLEQLRKN_					0	0	0			REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.29833984375	2	532.298373	1062.58219	0.027568	1.4674E-05	0.065691	3.4967E-05	0.093259	4.9642E-05	532.2984221292757	29.351	0.33696	29.429	29.289	29.626	0.078287					30	18	2	0	0	0	0.54097	1	3986	3986		0.69038	0	1	23799	+		25119	7759	16668	16828	33745	33745					0.05340547708851773
YLEQLRKN	8	Unmodified	_YLEQLRKN_					0	0	0			REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.298373	1062.58219	-0.098742	-5.256E-05	-0.03359	-1.788E-05	-0.13233	-7.044E-05	532.2982415494002	29.429	0.34102	29.429	29.275	29.616	0	-6.2244E-05	-7.423E-05	NaN	0.69038	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22148	+		25120	7759	16668	16828							0.05340547708851773
YLEQLRKN	8	Unmodified	_YLEQLRKN_					0	0	0			REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	532.298373	1062.58219	0.027568	1.4674E-05	0.065691	3.4967E-05	0.093259	4.9642E-05	532.2984221292757	29.351	0.33696	29.429	29.289	29.626	0.078287	6.2244E-05	3.1465E-05	NaN	0.69038	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23799	+		25121	7759	16668	16828							0.05340547708851773
YLERDLMIK	9	Unmodified	_YLERDLMIK_					0	0	0		ENST00000482253.5_1_1:97278336-97278375:+|nuORF	ENST00000482253.5_1_1:97278336-97278375:+|nuORF	ENST00000482253.5_1_1:97278336-97278375:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.2847290039062	2	590.823366	1179.63218	0.45771	0.00027043	-0.047706	-2.8186E-05	0.41001	0.00024224	590.8234399591486	62.431	0.51937	62.431	62.203	62.722	0					27	18	2	0	0	0	0.23347	1	14068	14068		13.615	4.0709	1	157250			25122	6757	16669	16829	33746	33746					0.049549143224794534
YLERDLMIK	9	Unmodified	_YLERDLMIK_					0	0	0		ENST00000482253.5_1_1:97278336-97278375:+|nuORF	ENST00000482253.5_1_1:97278336-97278375:+|nuORF	ENST00000482253.5_1_1:97278336-97278375:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	590.823366	1179.63218	0.46014	0.00027186	0.63353	0.00037431	1.0937	0.00064617	590.8231027705964	62.32	0.29604	62.393	62.207	62.503	0.072701	-0.019145	0.00060178	NaN	13.615	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131590			25123	6757	16669	16829							0.049549143224794534
YLERETFP	8	Unmodified	_YLERETFP_					0	0	0			REV__ENST00000335509.10_1_12:113735488-113735659:+|nuORF	REV__ENST00000335509.10_1_12:113735488-113735659:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.24951171875	2	527.763832	1053.51311	-0.49804	-0.00026285	-0.84927	-0.00044821	-1.3473	-0.00071106	527.7633589853735	41.324	0.46831	41.324	41.126	41.594	0					36	16	3	0	0	0	0.35759	1	7658	7658		9.3474	9.3474	1	120660	+		25124	11437	16670	16830	33747	33747					-0.011505363107289668
YLERVNTF	8	Unmodified	_YLERVNTF_					0	0	0			REV__GIPC3|p.G94Vfs*3|1|0.11|ENSG00000179855|chr19:3586545-3586545|G/-|frameshift_variant	REV__GIPC3|p.G94Vfs*3|1|0.11|ENSG00000179855|chr19:3586545-3586545|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.2536010742188	2	521.271824	1040.5291	-0.053134	-2.7697E-05	-0.77958	-0.00040638	-0.83272	-0.00043407	521.2712135628308	45.941	0.86364	45.941	45.556	46.42	0					52	29	4	0	0	0	0.49441	1	9219	9219		13.508	4.9146	1	115320	+		25125	10489	16671	16831	33748	33748					0.010451699261693648
YLERVNTF	8	Unmodified	_YLERVNTF_					0	0	0			REV__GIPC3|p.G94Vfs*3|1|0.11|ENSG00000179855|chr19:3586545-3586545|G/-|frameshift_variant	REV__GIPC3|p.G94Vfs*3|1|0.11|ENSG00000179855|chr19:3586545-3586545|G/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	521.271824	1040.5291	0.015068	7.8545E-06	-0.39548	-0.00020615	-0.38041	-0.0001983	521.2716137745965	45.862	0.45837	45.948	45.701	46.159	0.085621	0.0033291	0.00013438	NaN	13.508	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100640	+		25126	10489	16671	16831							0.010451699261693648
YLESMEDLF	9	Unmodified	_YLESMEDLF_					0	0	0			REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1	REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7546997070312	2	573.754815	1145.49508	0.40101	0.00023008	-0.59287	-0.00034016	-0.19186	-0.00011008	573.754386369064	88.473	0.93269	88.473	88.165	89.098	0					71	37	3	0	0	0	0.20367	1	22021	22021		18.135	0	1	288770	+		25127	13062	16672	16832	33749	33749					-0.0718503934774617
YLESMEDLF	9	Unmodified	_YLESMEDLF_					0	0	0			REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1	REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.1178588867188	2	573.754815	1145.49508	0.18128	0.00010401	0.28962	0.00016617	0.4709	0.00027018	573.7547875167436	89.526	0.97739	89.558	89.034	90.011	0.032257					87	36	3	0	0	0	0.25051	1	22289	22289		7.9102	0	1	464060	+		25128	13062	16672	16832	33750	33750					-0.0718503934774617
YLESWGAARPF	11	Unmodified	_YLESWGAARPF_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7;ENST00000570187.1_1_16:50338327-50342394:+|nuORF	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	432.88494873046875	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.676	1	76.676	76.176	77.176	0								0	0	0	0.33799	1	18448	18448		1.4551	0	1				25129	2149	16673	16833	33751	33751					-0.006117980909721155
YLETRSEFF	9	Unmodified	_YLETRSEFF_					0	0	0		ENST00000353107.7_1_8:101162841-101162934:+|nuORF	ENST00000353107.7_1_8:101162841-101162934:+|nuORF	ENST00000353107.7_1_8:101162841-101162934:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.2888793945312	2	596.287671	1190.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.49	1	102.49	101.99	102.99	0								0	0	0	0.25992	1	26302	26302		7.2892	1.9923	1				25130	6109	16674	16834	33752	33752					-0.026868821105381357
YLEYGSHED	9	Unmodified	_YLEYGSHED_					0	0	0		CASK|p.M815L|1|0.14|ENSG00000147044|chrX:41531084-41531084|T/G|missense_variant;nc|ENSG00000147044|O14936-5|CASK;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK	CASK|p.M815L|1|0.14|ENSG00000147044|chrX:41531084-41531084|T/G|missense_variant	CASK|p.M815L|1|0.14|ENSG00000147044|chrX:41531084-41531084|T/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.7322387695312	2	556.730186	1111.44582	0.33671	0.00018746	0.13563	7.5512E-05	0.47235	0.00026297	556.7304542005713	89.937	1.4454	89.972	89.462	90.907	0.034065					144	58	5	0	0	0	0.21398	1	22271	22271		16.942	0	1	6643200			25131	105	16675	16835	33753	33753					-0.1054461131232074
YLEYLQNRF	9	Unmodified	_YLEYLQNRF_					0	0	0		ENSG00000136244|ENST00000258743|IL6	ENSG00000136244|ENST00000258743|IL6	ENSG00000136244|ENST00000258743|IL6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.320068359375	2	623.316763	1244.61897	0.21211	0.00013221	3.0189	0.0018817	3.231	0.0020139	623.3190765869958	76.503	0.29259	76.543	76.441	76.734	0.03923					14	10	2	0	0	0	0.25979	1	18260	18260		11.64	3.7301	1	128740			25132	2782	16676	16836	33754	33754					0.006447995347571123
YLFDIYLLI	9	Unmodified	_YLFDIYLLI_					0	0	0			REV__ENST00000592279.6_1_19:15757939-15770192:+|nuORF	REV__ENST00000592279.6_1_19:15757939-15770192:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.2806396484375	2	586.833726	1171.6529	0.70479	0.0004136	-1.0545	-0.00061884	-0.34976	-0.00020525	586.8323882096487	99.319	0.10507	99.319	99.223	99.328	0					8	6	2	0	0	0	0.25809	1	25339	25339		2.3027	0	1	31040	+		25133	10708	16677	16837	33755	33755					0.07393827973805855
YLFFNEAF	8	Unmodified	_YLFFNEAF_					0	0	0			REV__ENST00000464184.5_1_X:129473893-129492795:+|nuORF	REV__ENST00000464184.5_1_X:129473893-129492795:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.313232421875	2	525.750193	1049.48583	0.48636	0.00025571	-1.1182	-0.0005879	-0.63185	-0.00033219	526.2512557049695	67.812	0.14613	67.875	67.758	67.904	0.063507					6	4	2	0	0	0	0.35759	1	15579	15579		11.114	0.93107	1	78009	+		25134	11981	16678	16838	33756	33756					-0.036930198510845
YLFGALQSI	9	Unmodified	_YLFGALQSI_					0	0	0		ENST00000590846.1_1_18:31804054-31804756:-|nuORF;ENST00000588355.1_1_18:31804054-31804846:-|nuORF	ENST00000590846.1_1_18:31804054-31804756:-|nuORF	ENST00000590846.1_1_18:31804054-31804756:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2799072265625	2	506.279118	1010.54368	0.23711	0.00012004	0.41451	0.00020986	0.65162	0.0003299	506.279236613777	83.021	0.50828	83.043	82.795	83.304	0.021744					30	17	2	0	0	0	0.14091	1	20198	20198		25.399	0	1	66320			25135	7250	16679	16839	33757	33757					0.03883242074334703
YLFGFFFG	8	Unmodified	_YLFGFFFG_					0	0	0		ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.75311279296875	2	499.244547	996.47454	-0.08024	-4.006E-05	0.68741	0.00034318	0.60717	0.00030312	499.2448222883178	43.961	0.26046	43.961	43.773	44.034	0					12	8	2	0	0	0	0.3576	1	8503	8503		2.8892	0	1	48459			25136	3926	16680	16840	33758	33758					-0.023837971545731307
YLFHGLWEF	9	Unmodified	_YLFHGLWEF_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2979736328125	2	606.297842	1210.58113	0.71624	0.00043426	2.0948	0.0012701	2.811	0.0017043	606.298818205664	73.497	0.50789	73.549	73.398	73.906	0.052574					31	19	2	0	0	0	0.25209	2	17317	17317;17327		12.532	3.1841	1	119090	+		25137	8041	16681	16841	33759;33760	33759					-0.015736666600332683
YLFIAFVGF	9	Unmodified	_YLFIAFVGF_					0	0	0		ENSG00000183908|ENST00000497933|LRRC55	ENSG00000183908|ENST00000497933|LRRC55	ENSG00000183908|ENST00000497933|LRRC55	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7932739257812	2	538.794404	1075.57425	0.07234	3.8977E-05	-1.8396	-0.00099118	-1.7673	-0.0009522	538.793285679578	105.96	0.32916	105.96	105.89	106.22	0					46	30	2	0	0	0	0.18003	1	27335	27335		20.871	6.2895	1	115680			25138	4951	16682	16842	33761	33761					0.039490204593676026
YLFIAPGF	8	Unmodified	_YLFIAPGF_					0	0	0			REV__ENSG00000175619|ENST00000309562|OR4B1	REV__ENSG00000175619|ENST00000309562|OR4B1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.73541259765625	2	464.252372	926.49019	-0.00039302	-1.8246E-07	-4.1416	-0.0019228	-4.142	-0.0019229	464.25049484762553	56.272	0.33295	56.339	56.161	56.494	0.066452					16	12	2	0	0	0	0.35256	1	12117	12117		11.114	0	1	70919	+		25139	10383	16683	16843	33762	33762					0.02400489362469216
YLFIAWPVT	9	Unmodified	_YLFIAWPVT_					0	0	0		ENST00000378891.9_3_1:1270760-1271384:-|nuORF	ENST00000378891.9_3_1:1270760-1271384:-|nuORF	ENST00000378891.9_3_1:1270760-1271384:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3035888671875	2	555.305136	1108.59572	0.61448	0.00034123	-4.1113	-0.002283	-3.4968	-0.0019418	555.3027633074764	70.985	0.48262	70.985	70.786	71.269	0					22	16	2	0	0	0	0.28587	1	16704	16704		8.5933	0.98433	1	84790			25140	6269	16684	16844	33763	33763					0.04576405488069213
YLFKNNPE	8	Unmodified	_YLFKNNPE_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.7606201171875	2	512.758549	1023.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.867	1	98.867	98.367	99.367	0								0	0	0	0.38652	1	25202	25202		16.942	1.0951	1				25141	2997	16685	16845	33764	33764					-0.008265189651410765
YLFLIPHEE	9	Unmodified	_YLFLIPHEE_					0	0	0			REV__ENSG00000173597|ENST00000310613|SULT1B1	REV__ENSG00000173597|ENST00000310613|SULT1B1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.8212280273438	2	580.802957	1159.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.76	1	106.79	106.29	107.29	0.025711								0	0	0	0.28409	1	27339	27339		2.3027	0.4585	1		+		25142	10326	16686	16846	33765	33765					0.017948962745322206
YLFNEWRSE	9	Unmodified	_YLFNEWRSE_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7896728515625	2	622.290745	1242.56694	0.070846	4.4087E-05	0.34461	0.00021445	0.41546	0.00025854	622.2913158735284	91.469	0.84212	91.469	90.973	91.815	0					36	30	2	0	0	0	0.25051	1	22935	22935		7.9102	0.62092	1	101010			25143	4456	16687	16847	33766	33766					-0.04464363879014854
YLFNKDIFF	9	Unmodified	_YLFNKDIFF_					0	0	0			REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.813720703125	2	603.813325	1205.6121	0.74456	0.00044958	0.3256	0.0001966	1.0702	0.00064618	603.8130968877239	98.696	0.53811	98.696	98.448	98.987	0					60	31	3	0	0	0	0.2796	2	25111	25111;25167		9.3474	4.1168	1	238170	+		25144	13134	16688	16848	33767;33768	33767					0.017514866541660012
YLFNKDIFF	9	Unmodified	_YLFNKDIFF_					0	0	0			REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.8138427734375	2	603.813325	1205.6121	0.79832	0.00048203	0.3485	0.00021043	1.1468	0.00069246	603.8131504712973	98.659	0.58237	98.701	98.482	99.064	0.041931					70	35	3	0	0	0	0.2796	3	24948	24948;24988;25031		9.3474	4.1168	1	455020	+		25145	13134	16688	16848	33769;33770;33771	33769					0.017514866541660012
YLFNKDIFF	9	Unmodified	_YLFNKDIFF_					0	0	0			REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	603.813325	1205.6121	0.74456	0.00044958	0.3256	0.0001966	1.0702	0.00064618	603.8130968877239	98.696	0.53811	98.696	98.448	98.987	0	-0.0023597	-1.6766E-05	NaN	9.3474	60	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238170	+		25146	13134	16688	16848							0.017514866541660012
YLFPDQQI	8	Unmodified	_YLFPDQQI_					0	0	0		ENST00000390340.2_1_7:38331389-38331587:-|nuORF	ENST00000390340.2_1_7:38331389-38331587:-|nuORF	ENST00000390340.2_1_7:38331389-38331587:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2618408203125	2	512.260925	1022.5073	0.58469	0.00029951	1.0379	0.0005317	1.6226	0.00083121	512.2614396096011	82.33	1.3611	82.33	81.78	83.141	0					78	47	3	0	0	0	0.52924	1	20286	20286		8.5933	0	1	263100			25147	6310	16689	16849	33772	33772					-0.0030563482238221695
YLFPETQWI	9	Unmodified	_YLFPETQWI_					0	0	0			REV__nc|ENSG00000106565|Q3YBM2-2|TMEM176B	REV__nc|ENSG00000106565|Q3YBM2-2|TMEM176B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8013916015625	2	598.802957	1195.59136	0.54852	0.00032845	-1.6397	-0.00098183	-1.0911	-0.00065338	598.8007089750279	70.6	0.77835	70.66	70.332	71.11	0.060562					73	29	4	0	0	0	0.24021	1	16470	16470		13.906	0.86358	1	273520	+		25148	8577	16690	16850	33773	33773					0.00138896274529543
YLFQKKFKTL	10	Unmodified	_YLFQKKFKTL_					0	0	0			REV__ENSG00000055163|ENST00000620254|CYFIP2	REV__ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.8682556152344	3	439.263941	1314.76999	0.62537	0.0002747	-0.45324	-0.00019909	0.17213	7.5611E-05	439.26380199219994	63.469	0.38808	63.469	63.291	63.679	0					17	12	2	0	0	0	0.31735	1	14392	14392		7.4771	0	1	125570	+		25149	8067	16691	16851	33774	33774					0.12519985913399978
YLFQPMYIH	9	Unmodified	_YLFQPMYIH_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|129|3|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|129|3|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.2997436523438	2	606.299527	1210.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.892	1	82.913	82.413	83.413	0.021744								0	0	0	0.25361	1	20182	20182		8.5933	0	1		+		25150	12716	16692	16852	33775	33775					-0.012367398777087146
YLFSVPVIF	9	Unmodified	_YLFSVPVIF_					0	0	0			REV__tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	REV__tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2855834960938	2	542.807511	1083.60047	0.26238	0.00014242	-3.7746	-0.0020489	-3.5122	-0.0019065	542.8055685202709	59.227	0.3399	59.299	59.18	59.52	0.072342					21	12	2	0	0	0	0.20004	1	13011	13011		23.148	6.9993	1	135930	+		25151	13202	16693	16853	33776	33776					0.06201289630848805
YLFVFIFCFL	10	Unmodified	_YLFVFIFCFL_					0	0	0			REV__ENST00000593300.1_1_7:27139360-27139525:+|nuORF	REV__ENST00000593300.1_1_7:27139360-27139525:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.21441650390625	3	437.899723	1310.67734	0.55068	0.00024114	0.90417	0.00039594	1.4549	0.00063708	438.2343080319388	100.61	0.37873	100.61	100.36	100.74	0					36	21	2	0	0	0	0.31851	1	25754	25754		0.77653	0.77653	1	116640	+		25152	12594	16694	16854	33777	33777					0.03442764855662972
YLFVFVTL	8	Unmodified	_YLFVFVTL_					0	0	0			REV__ENST00000264930.9_2_5:1051864-1052263:-|nuORF	REV__ENST00000264930.9_2_5:1051864-1052263:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.2885437011719	2	501.288954	1000.56336	0.46414	0.00023267	2.0343	0.0010198	2.4984	0.0012524	501.29010486169045	83.215	0.67973	83.215	82.928	83.608	0					51	21	3	0	0	0	0.49441	1	20448	20448		13.508	0.46542	1	201680	+		25153	11256	16695	16855	33778	33778					0.06309618085094826
YLFVPLKF	8	Unmodified	_YLFVPLKF_					0	0	0			REV__tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	REV__tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.8054809570312	2	513.804771	1025.59499	0.50448	0.00025921	1.0708	0.00055018	1.5753	0.00080939	513.8052431059389	91.81	0.40771	91.81	91.652	92.06	0					18	14	2	0	0	0	0.54081	1	23126	23126		0.79363	0	1	52466	+		25154	13155	16696	16856	33779	33779					0.0832161083903884
YLGEKTFSF	9	Unmodified	_YLGEKTFSF_					0	0	0		nc|ENSG00000203808|Q5T3Y7|BVES-AS1	nc|ENSG00000203808|Q5T3Y7|BVES-AS1	nc|ENSG00000203808|Q5T3Y7|BVES-AS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2741088867188	2	546.274032	1090.53351	0.26999	0.00014749	0.04782	2.6123E-05	0.31781	0.00017361	546.2736277615866	48.547	0.36918	48.627	48.414	48.783	0.080029					17	11	2	0	0	0	0.23216	1	9756	9756		14.838	0	1	93710			25155	7589	16697	16857	33780	33780					-0.008133656509016873
YLGENKLLF	9	Unmodified	_YLGENKLLF_					0	0	0			REV__ENST00000291232.4_2_22:42318247-42318586:-|nuORF	REV__ENST00000291232.4_2_22:42318247-42318586:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.795166015625	2	548.8055	1095.59645	0.4818	0.00026441	0.66309	0.00036391	1.1449	0.00062832	548.8057207886106	79.329	0.54736	79.329	79.015	79.562	0					43	18	3	0	0	0	0.20367	1	19187	19187		18.135	0	1	156580	+		25156	11318	16698	16858	33781	33781					0.052472001371370425
YLGFDVDML	9	Unmodified	_YLGFDVDML_					0	0	0		ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.3214721679688	2	536.754618	1071.49468	0.19282	0.0001035	-4.103	-0.0022023	-3.9102	-0.0020988	536.7523971441007	59.314	0.67659	59.314	58.979	59.656	0					35	25	2	0	0	0	0.24263	1	13207	13207		12.532	0	1	135370			25157	6722	16699	16859	33782	33782					-0.03820414276947304
YLGFWMNKL	9	Unmodified	_YLGFWMNKL_					0	0	0			REV__nc|ENSG00000111405|P21128-3|ENDOU	REV__nc|ENSG00000111405|P21128-3|ENDOU	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8135986328125	2	586.30207	1170.58959	0.44459	0.00026066	1.622	0.00095097	2.0666	0.0012116	586.3027253283602	87.097	0.60445	87.097	86.969	87.574	0					36	24	2	0	0	0	0.24749	1	21719	21719		9.3474	0	1	141070	+		25158	8688	16700	16860	33783	33783					0.011115639849094805
YLGILFDIF	9	Unmodified	_YLGILFDIF_					0	0	0			REV__tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1	REV__tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.79248046875	2	550.804968	1099.59538	0.61841	0.00034062	-1.7949	-0.00098862	-1.1765	-0.000648	550.8052419723606	93.356	0.44006	93.393	93.195	93.635	0.037369					32	18	3	0	0	0	0.20367	1	23393	23393		18.135	0	1	46885	+		25159	13221	16701	16861	33784	33784					0.04956985768217237
YLGIWDSPYV	10	Unmodified	_YLGIWDSPYV_					0	0	0			REV__HECW2|p.D87Y|1|0.1|ENSG00000138411|chr2:196433165-196433165|C/A|missense_variant	REV__HECW2|p.D87Y|1|0.1|ENSG00000138411|chr2:196433165-196433165|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.8003540039062	2	606.800414	1211.58628	0.78919	0.00047888	-0.10383	-6.3001E-05	0.68537	0.00041588	606.8001510040926	92.061	0.72401	92.061	91.707	92.431	0					68	26	4	0	0	0	0.36288	1	23163	23163		15.847	3.6065	1	325410	+		25160	12667	16702	16862	33785	33785					-0.011054075881020253
YLGIWDSPYV	10	Unmodified	_YLGIWDSPYV_					0	0	0			REV__HECW2|p.D87Y|1|0.1|ENSG00000138411|chr2:196433165-196433165|C/A|missense_variant	REV__HECW2|p.D87Y|1|0.1|ENSG00000138411|chr2:196433165-196433165|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.8015747070312	2	606.800414	1211.58628	0.81466	0.00049434	-0.22312	-0.00013539	0.59155	0.00035895	606.8002246470265	91.885	0.965	91.922	91.559	92.524	0.03653					52	23	3	0	0	0	0.36288	2	22942	22942;22991		15.847	3.6065	1	174210	+		25161	12667	16702	16862	33786;33787	33786					-0.011054075881020253
YLGLLVLAI	9	Unmodified	_YLGLLVLAI_					0	0	0			REV__tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	REV__tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.8177185058594	2	487.817879	973.621205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.33	1	103.33	102.83	103.83	0								0	0	0	0.24995	1	26558	26558		9.3474	0	1		+		25162	13093	16703	16863	33788	33788					0.13333880010509347
YLGLLVLAI	9	Unmodified	_YLGLLVLAI_					0	0	0			REV__tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	REV__tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.3197021484375	2	487.817879	973.621205	0.25764	0.00012568	-0.06426	-3.1347E-05	0.19338	9.4334E-05	487.81773763532414	102.66	0.37244	102.7	102.64	103.02	0.040909					51	30	3	0	0	0	0.11964	1	26277	26277		28.173	0	1	230000	+		25163	13093	16703	16863	33789	33789					0.13333880010509347
YLGLPAFLL	9	Unmodified	_YLGLPAFLL_					0	0	0		nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5	nc|ENSG00000100462|O14744-2|PRMT5	nc|ENSG00000100462|O14744-2|PRMT5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.78399658203125	2	503.802229	1005.5899	0.50869	0.00025628	-0.74181	-0.00037372	-0.23312	-0.00011744	503.80180827451477	97.533	0.86848	97.533	97.461	98.33	0					74	43	2	0	0	0	0.2796	2	24908	24908;25001		9.3474	0	1	397790			25164	1201	16704	16864	33790;33791	33790					0.08733306976421318
YLGPGGIGDF	10	Unmodified	_YLGPGGIGDF_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT;ENST00000520678.1_1_8:43037358-43049067:+|nuORF	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.2552185058594	2	498.245275	994.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.045	1	36.045	35.545	36.545	0								0	0	0	0.33681	1	6101	6101		3.9444	0.3479	1				25165	4055	16705	16865	33792	33792					-0.02146207856469573
YLGQSDWDE	9	Unmodified	_YLGQSDWDE_					0	0	0			REV__nc|ENSG00000182175|Q96B86-3|RGMA	REV__nc|ENSG00000182175|Q96B86-3|RGMA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.730712890625	2	556.730186	1111.44582	0.34931	0.00019447	0.25423	0.00014154	0.60354	0.00033601	556.7305047794086	90.012	1.618	90.012	89.445	91.063	0					164	62	5	0	0	0	0.19376	1	22493	22493		25.399	8.457	1	6485300	+		25166	10555	16706	16866	33793	33793					-0.10544611312343477
YLGSPGAPFL	10	Unmodified	_YLGSPGAPFL_					0	0	0			REV__ENST00000524558.5_1_11:75274226-75274610:+|nuORF	REV__ENST00000524558.5_1_11:75274226-75274610:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.74951171875	2	511.271293	1020.52803	0.26962	0.00013785	-1.7039	-0.00087115	-1.4343	-0.0007333	511.7720666436383	55.963	0.27454	56.029	55.868	56.142	0.06543					15	9	3	0	0	0	0.31691	1	12000	12000		7.2892	0.93513	1	74220	+		25167	12317	16707	16867	33794	33794					0.01858955557270292
YLGTEAFEYL	10	Unmodified	_YLGTEAFEYL_					0	0	0		tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2889404296875	2	603.289879	1204.56521	0.7883	0.00047557	-1.4313	-0.00086351	-0.64303	-0.00038793	603.2889374256733	92.933	0.36538	92.933	92.713	93.078	0					23	13	2	0	0	0	0.38104	1	23397	23397		13.906	0	1	120740			25168	13544	16708	16868	33795	33795					-0.028894176876065103
YLGTEAFEYL	10	Unmodified	_YLGTEAFEYL_					0	0	0		tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	603.289879	1204.56521	0.77832	0.00046955	-1.3534	-0.0008165	-0.57509	-0.00034694	603.2888512495587	92.804	0.48849	92.842	92.671	93.16	0.037369	-0.045726	6.4495E-05	NaN	13.906	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102320			25169	13544	16708	16868							-0.028894176876065103
YLGTKLHAP	9	Unmodified	_YLGTKLHAP_					0	0	0			REV__ENST00000397728.7_1_21:47609326-47609845:-|nuORF	REV__ENST00000397728.7_1_21:47609326-47609845:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.2772521972656	2	500.284734	998.554916	-0.028585	-1.4301E-05	3.374	0.0016879	3.3454	0.0016736	500.2854594174662	43.235	0.093903	43.325	43.268	43.362	0.089767					4	2	2	0	0	0	0.25845	1	8129	8129		2.0598	0	1	13331	+		25170	11735	16709	16869	33796	33796					0.05558064168474175
YLGYLKQLL	9	Unmodified	_YLGYLKQLL_					0	0	0			REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.8131713867188	2	555.831517	1109.64848	0.77925	0.00043313	-4.4242	-0.0024591	-3.6449	-0.002026	555.8292426076863	65.194	0.36134	65.194	65.06	65.421	0					19	12	2	0	0	0	0.25209	2	14927	14927;14992		12.532	3.9383	1	76711	+		25171	7888	16710	16870	33797;33798	33797					0.09804363550892958
YLGYLKQLL	9	Unmodified	_YLGYLKQLL_					0	0	0			REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.8130493164062	2	555.831517	1109.64848	0.70651	0.0003927	-4.2343	-0.0023536	-3.5278	-0.0019609	555.829051084832	65.164	0.36356	65.233	65.061	65.424	0.068909					18	13	2	0	0	0	0.21398	1	14773	14773		16.942	4.4107	1	106380	+		25172	7888	16710	16870	33799	33799					0.09804363550892958
YLGYLKQLL	9	Unmodified	_YLGYLKQLL_					0	0	0			REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	555.831517	1109.64848	0.77925	0.00043313	-4.4242	-0.0024591	-3.6449	-0.002026	555.8292426076863	65.194	0.36134	65.194	65.06	65.421	0	-0.01932	-0.00014318	NaN	16.942	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76711	+		25173	7888	16710	16870							0.09804363550892958
YLGYPVLQI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))YLGYPVLQI_					1	0	0		KIAA1549|p.E1153K|1|0.36|ENSG00000122778|chr7:138906922-138906922|C/T|missense_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	KIAA1549|p.E1153K|1|0.36|ENSG00000122778|chr7:138906922-138906922|C/T|missense_variant	KIAA1549|p.E1153K|1|0.36|ENSG00000122778|chr7:138906922-138906922|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.3081665039062	2	554.307875	1106.6012	0.49676	0.00027536	-0.067412	-3.7367E-05	0.42935	0.00023799	554.3077559095292	94.67	1.168	94.67	94.271	95.439	0					155	49	4	0	0	0	0.026569	1	23998	23998		53.576	9.7173	1	2283400			25174	2195	16711	16871	33800	33800					0.05216084279913957
YLGYSNSLSH	10	Unmodified	_YLGYSNSLSH_					0	0	0			REV__ENST00000525151.5_1_6:111806061-111824561:+|nuORF	REV__ENST00000525151.5_1_6:111806061-111824561:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2741088867188	2	570.769645	1139.52474	0.72785	0.00041543	3.6223	0.0020675	4.3501	0.0024829	571.2736819812615	81.734	0.51891	81.734	81.489	82.008	0					30	17	2	0	0	0	0.24016	1	19995	19995		29.082	2.1979	1	203590	+		25175	12321	16712	16872	33801	33801					-0.03944339287386356
YLHEEFPES	9	Unmodified	_YLHEEFPES_					0	0	0		ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENSG00000182768|ENST00000379095|NGRN	ENSG00000182768|ENST00000379095|NGRN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.7542724609375	2	575.756204	1149.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.05	1	99.092	98.592	99.592	0.041931								0	0	0	0.2722	1	25101	25101		4.756	1.1595	1				25176	4891	16713	16873	33802	33802					-0.0709144789855145
YLHHPILNL	9	Unmodified	_YLHHPILNL_					0	0	0			REV__nc|ENSG00000157426|Q4L235-2|AASDH	REV__nc|ENSG00000157426|Q4L235-2|AASDH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.346435546875	2	560.319109	1118.62366	0.31998	0.00017929	-0.4676	-0.00026201	-0.14762	-8.2717E-05	560.3169534958372	78.823	0.14749	78.823	78.754	78.901	0					6	4	2	0	0	0	0.29105	1	19085	19085		7.9102	0	1	55178	+		25177	9776	16714	16874	33803	33803					0.06909728468190224
YLHPSSLP	8	Unmodified	_YLHPSSLP_					0	0	0			REV__ENST00000514697.1_1_5:6746314-6755055:+|nuORF	REV__ENST00000514697.1_1_5:6746314-6755055:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.90765380859375	2	457.242535	912.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.845	1	70.903	70.403	71.403	0.058578								0	0	0	0.38822	1	16510	16510		5.7604	2.8712	1		+		25178	8729	16715	16875	33804	33804					0.010781133517184571
YLHYLIMI	8	Unmodified	_YLHYLIMI_					0	0	0			REV__GPR139|p.R244P|1|0.31|ENSG00000180269|chr16:20032066-20032066|C/G|missense_variant	REV__GPR139|p.R244P|1|0.31|ENSG00000180269|chr16:20032066-20032066|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.3087768554688	2	533.293714	1064.57287	0.55062	0.00029364	2.5491	0.0013594	3.0998	0.0016531	533.2949953359108	68.465	0.71094	68.529	68.192	68.903	0.063507					36	26	2	0	0	0	0.51202	1	15893	15893		11.114	4.7604	1	115640	+		25179	10503	16716	16876	33805	33805					0.04317063098960716
YLIFMKRL	8	Unmodified	_YLIFMKRL_					0	0	0		tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.82666015625	2	542.322805	1082.63106	0.59272	0.00032145	3.773	0.0020462	4.3658	0.0023676	542.3246316348694	99.638	0.13944	99.681	99.57	99.709	0.042831					9	8	2	0	0	0	0.52502	1	25263	25263		9.3474	0	1	101840			25180	13530	16717	16877	33806	33806					0.09304744744235904
YLIFMKRL	8	Unmodified	_YLIFMKRL_					0	0	0		tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	542.322805	1082.63106	0.49504	0.00026847	5.5155	0.0029912	6.0105	0.0032596	542.3256721286045	99.713	0.054581	99.713	99.688	99.743	0	0.016039	0.00089467	NaN	9.3474	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155970			25181	13530	16717	16877							0.09304744744235904
YLIGRRGRA	9	Unmodified	_YLIGRRGRA_					0	0	0		ENST00000450917.1_1_2:3523256-3523661:+|nuORF	ENST00000450917.1_1_2:3523256-3523661:+|nuORF	ENST00000450917.1_1_2:3523256-3523661:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.3181762695312	2	531.319974	1060.6254	0.33027	0.00017548	-1.428	-0.00075871	-1.0977	-0.00058324	531.3190733895401	89.215	0.9514	89.247	89.034	89.985	0.032265					81	35	4	0	0	0	0.25209	1	22080	22080		12.532	2.4576	1	562280			25182	6562	16718	16878	33807	33807					0.09750782276819336
YLIKEFVLV	9	Unmodified	_YLIKEFVLV_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.79541015625	2	562.341718	1122.66888	0.36733	0.00020656	3.6842	0.0020718	4.0515	0.0022783	562.3437566986755	86.4	0.22625	86.425	86.359	86.586	0.025169					12	9	2	0	0	0	0.25416	1	21277	21277		5.2307	0.90143	1	56556	+		25183	8013	16719	16879	33808	33808					0.11245534210684127
YLIKQQRHF	9	Unmodified	_YLIKQQRHF_					0	0	0			REV__ENST00000546707.1_1_12:47735697-47735859:-|nuORF	REV__ENST00000546707.1_1_12:47735697-47735859:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	411.8731384277344	3	411.568135	1231.68258	0.53851	0.00022163	-1.1609	-0.0004778	-0.62242	-0.00025617	411.90189777604587	62.157	0.13087	62.157	62.096	62.227	0					6	4	2	0	0	0	0.25787	1	14022	14022		2.9952	0.26005	1	20903	+		25184	12415	16720	16880	33809	33809					0.07600204762502472
YLIKWQLI	8	Unmodified	_YLIKWQLI_					0	0	0			REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.828857421875	2	538.828778	1075.643	0.34084	0.00018365	0.14272	7.6899E-05	0.48355	0.00026055	538.8287604456298	79.006	0.8982	79.006	78.754	79.652	0					92	30	5	0	0	0	0.38286	1	19121	19121		28.173	11.231	1	1951300	+		25185	13189	16721	16881	33810	33810					0.10820684759096366
YLIKYIAI	8	Unmodified	_YLIKYIAI_					0	0	0		nc|ENSG00000118985|O00472-2|ELL2;ENSG00000118985|ENST00000237853|ELL2	nc|ENSG00000118985|O00472-2|ELL2	nc|ENSG00000118985|O00472-2|ELL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.8092041015625	2	498.810054	995.605554	0.4665	0.0002327	-2.2757	-0.0011352	-1.8092	-0.00090247	498.8088580890126	102.41	0.40862	102.46	102.26	102.67	0.040909					44	29	2	0	0	0	0.52502	1	26122	26122		9.3474	0	1	43171			25186	2055	16722	16882	33811	33811					0.10757593493440254
YLINSRNLW	9	Unmodified	_YLINSRNLW_					0	0	0			REV__ENSG00000142549|ENST00000270642|IGLON5	REV__ENSG00000142549|ENST00000270642|IGLON5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3180541992188	2	589.819473	1177.62439	0.38535	0.00022729	1.3408	0.00079086	1.7262	0.0010181	589.8206258671006	77.948	0.86553	77.948	77.84	78.705	0					52	29	2	0	0	0	0.24749	1	19026	19026		9.3474	4.1168	1	165560	+		25187	9434	16723	16883	33812	33812					0.04268523117229961
YLIPLYAL	8	Unmodified	_YLIPLYAL_					0	0	0		ENST00000327827.11_1_16:9212636-9212786:+|nuORF	ENST00000327827.11_1_16:9212636-9212786:+|nuORF	ENST00000327827.11_1_16:9212636-9212786:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2872009277344	2	483.288954	964.563355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.165	1	68.165	67.665	68.665	0								0	0	0	0.38822	1	15849	15849		6.3541	0.14832	1				25188	6048	16724	16884	33813	33813					0.07965618085074766
YLIQLSRPPE	10	Unmodified	_YLIQLSRPPE_					0	0	0		ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.3412475585938	2	608.340238	1214.66592	0.61602	0.00037475	2.4486	0.0014896	3.0646	0.0018643	608.3416663199445	96.897	0.60265	96.897	96.632	97.235	0					46	30	2	0	0	0	0.336	1	24565	24565		21.537	4.5947	1	467770			25189	4893	16725	16885	33814	33814					0.06717659085916239
YLIQLSRPPE	10	Unmodified	_YLIQLSRPPE_					0	0	0		ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	608.340238	1214.66592	0.72366	0.00044023	1.9831	0.0012064	2.7068	0.0016466	608.3413762467732	96.749	0.4427	96.789	96.611	97.054	0.039772	-0.054352	-0.00020636	NaN	21.537	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	558480			25190	4893	16725	16885							0.06717659085916239
YLIQQCYAGN	10	Unmodified	_YLIQQCYAGN_					0	0	0			REV__tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1	REV__tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7855834960938	2	586.773874	1171.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.098	1	97.098	96.598	97.598	0								0	0	0	0.33395	1	24665	24665		7.2892	1.5288	1		+		25191	13322	16726	16886	33815	33815					-0.04571108642426225
YLITDQAETVS	11	Unmodified	_YLITDQAETVS_					0	0	0			REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3084716796875	2	620.3088	1238.60305	-0.062175	-3.8568E-05	-0.64921	-0.00040271	-0.71138	-0.00044128	620.3083146007086	94.792	0.61207	94.792	94.545	95.157	0					61	24	4	0	0	0	0.23934	2	23973	23973;24011		24.991	6.8446	1	267890	+		25192	11897	16727	16887	33816;33817	33816					-0.006709514928161298
YLITDQAETVS	11	Unmodified	_YLITDQAETVS_					0	0	0			REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.3084716796875	2	620.3088	1238.60305	0.04305	2.6704E-05	-0.86017	-0.00053357	-0.81712	-0.00050686	620.3081090389188	96.825	0.9913	96.825	96.447	97.438	0					87	46	2	0	0	0	0.33157	4	24604	24604;24608;24659;24702		14.405	3.5815	1	335730	+		25193	11897	16727	16887	33818;33819;33820;33821	33818					-0.006709514928161298
YLITDQAETVS	11	Unmodified	_YLITDQAETVS_					0	0	0			REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3088989257812	2	620.3088	1238.60305	0.16981	0.00010533	-0.98877	-0.00061334	-0.81896	-0.00050801	620.3080112652741	96.7	0.94389	96.74	96.472	97.416	0.039772					93	46	3	0	0	0	0.23934	3	24364	24364;24502;24510		24.991	3.454	1	316460	+		25194	11897	16727	16887	33822;33823;33824	33822					-0.006709514928161298
YLITDQAETVS	11	Unmodified	_YLITDQAETVS_					0	0	0			REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	620.3088	1238.60305	-0.026483	-1.6428E-05	-0.91869	-0.00056987	-0.94517	-0.0005863	620.3082910165805	94.754	0.67159	94.792	94.5	95.171	0.038094	0.00028649	-0.0001531	NaN	24.991	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271510	+		25195	11897	16727	16887							-0.006709514928161298
YLIVDRDEAW	10	Unmodified	_YLIVDRDEAW_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.3617553710938	2	640.319502	1278.62445	0.24456	0.0001566	1.1553	0.00073975	1.3999	0.00089635	640.3202608693263	83.875	0.36411	83.897	83.751	84.115	0.021744					22	12	3	0	0	0	0.42335	1	20481	20481		9.3831	2.66	1	128520			25196	2775	16728	16888	33825	33825					-0.0037152167342355824
YLIWKLLS	8	Unmodified	_YLIWKLLS_					0	0	0		ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	518.2896728515625	2	518.315503	1034.61645	0.20397	0.00010572	-4.2749	-0.0022157	-4.0709	-0.00211	518.3133163533657	58.321	0.33218	58.391	58.261	58.593	0.070477					20	11	3	0	0	0	0.35759	1	12743	12743		9.3474	0	1	99038			25197	3865	16729	16889	33826	33826					0.10052995867749814
YLIWKLLS	8	Unmodified	_YLIWKLLS_					0	0	0		ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	518.315503	1034.61645	0.036551	1.8945E-05	-3.5035	-0.0018159	-3.467	-0.001797	518.3137656645183	58.432	0.53352	58.432	58.256	58.79	0	0.020518	0.00033317	NaN	9.3474	22	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135050			25198	3865	16729	16889							0.10052995867749814
YLKAFEEQF	9	Unmodified	_YLKAFEEQF_					0	0	0			REV__tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	REV__tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.7743530273438	2	587.792589	1173.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.389	1	72.389	71.889	72.889	0								0	0	0	0.18435	1	17134	17134		20.454	2.3186	1		+		25199	13071	16730	16890	33827	33827					-0.009216941051590766
YLKAFLAAVL	10	Unmodified	_YLKAFLAAVL_					0	0	0		ENSG00000144648|ENST00000422265|ACKR2	ENSG00000144648|ENST00000422265|ACKR2	ENSG00000144648|ENST00000422265|ACKR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2522583007812	2	554.841885	1107.66922	0.4937	0.00027393	-0.35776	-0.0001985	0.13595	7.5428E-05	554.841656479486	79.079	0.47052	79.079	78.928	79.398	0					25	15	2	0	0	0	0.31496	1	19272	19272		13.906	5.3128	1	118980			25200	3220	16731	16891	33828	33828					0.11968953930545467
YLKAFLAAVL	10	Unmodified	_YLKAFLAAVL_					0	0	0		ENSG00000144648|ENST00000422265|ACKR2	ENSG00000144648|ENST00000422265|ACKR2	ENSG00000144648|ENST00000422265|ACKR2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.252197265625	2	554.841885	1107.66922	0.49329	0.0002737	0.12997	7.2116E-05	0.62326	0.00034581	554.8418994656839	79.101	0.53143	79.129	78.934	79.465	0.028084					35	18	3	0	0	0	0.31712	1	19100	19100		6.7232	0.96273	1	77943			25201	3220	16731	16891	33829	33829					0.11968953930545467
YLKARHSF	8	Unmodified	_YLKARHSF_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.23492431640625	2	511.282526	1020.5505	-0.080601	-4.121E-05	-1.4501	-0.00074141	-1.5307	-0.00078262	511.28163687023454	39.856	0.37437	39.856	39.722	40.096	0					27	12	3	0	0	0	0.3576	1	7294	7294		4.756	0.42677	1	50257	+		25202	9689	16732	16892	33830	33830					0.04104599745562609
YLKDFMEFL	9	Unmodified	_YLKDFMEFL_					0	0	0			REV__ENST00000533694.5_1_11:119025500-119029249:+|nuORF	REV__ENST00000533694.5_1_11:119025500-119029249:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.8159790039062	2	603.299193	1204.58383	0.92388	0.00055738	0.18987	0.00011455	1.1138	0.00067193	603.2986501329331	80.013	0.1254	80.013	79.926	80.051	0					5	3	2	0	0	0	0.25416	1	19463	19463		5.2307	0	1	31336	+		25203	10287	16733	16893	33831	33831					-0.0102757931740598
YLKDFNYIL	9	Unmodified	_YLKDFNYIL_					0	0	0		tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.8184204101562	2	594.818607	1187.62266	0.26334	0.00015664	0.1928	0.00011468	0.45614	0.00027132	594.8186276191642	94.825	0.74898	94.825	94.656	95.405	0					67	30	3	0	0	0	0.14091	2	24016	23969;24016		25.399	2.663	1	401270			25204	13563	16734	16894	33832;33833	33833					0.036354693086195766
YLKDFNYIL	9	Unmodified	_YLKDFNYIL_					0	0	0		tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.8189086914062	2	594.818607	1187.62266	0.13854	8.2407E-05	0.0916	5.4485E-05	0.23014	0.00013689	594.8185349732829	94.865	0.81676	94.904	94.612	95.429	0.038872					76	33	3	0	0	0	0.15911	1	23833	23833		32.305	3.8186	1	280850			25205	13563	16734	16894	33834	33834					0.036354693086195766
YLKDPEKT	8	Unmodified	_YLKDPEKT_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2675476074219	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.55	1	39.639	39.139	40.139	0.088562								0	0	0	0.38822	1	7031	7031		3.5965	0	1				25206	5278	16735	16895	33835	33835					0.02130347832053303
YLKEPTQF	8	Unmodified	_YLKEPTQF_					0	0	0			REV__nc|ENSG00000101049|Q9HBY8-1|SGK2	REV__nc|ENSG00000101049|Q9HBY8-1|SGK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7808227539062	2	513.26875	1024.52295	0.20613	0.0001058	-1.6628	-0.00085349	-1.4567	-0.00074769	513.2679118727708	71.739	0.54799	71.795	71.54	72.088	0.055931					32	19	2	0	0	0	0.50159	1	16738	16738		12.532	0	1	295780	+		25207	12766	16736	16896	33836	33836					0.011666516946434058
YLKIIFFW	8	Unmodified	_YLKIIFFW_					0	0	0		ENST00000083182.7_1_17:58533662-58538045:-|nuORF	ENST00000083182.7_1_17:58533662-58538045:-|nuORF	ENST00000083182.7_1_17:58533662-58538045:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.3082885742188	2	565.325871	1128.63719	0.17173	9.7085E-05	-2.6874	-0.0015192	-2.5157	-0.0014222	565.3244349077706	71.777	0.38798	71.777	71.584	71.972	0					20	13	3	0	0	0	0.51887	1	16942	16942		10.183	0	1	96408			25208	5778	16737	16897	33837	33837					0.07801586247410341
YLKIIFFW	8	Unmodified	_YLKIIFFW_					0	0	0		ENST00000083182.7_1_17:58533662-58538045:-|nuORF	ENST00000083182.7_1_17:58533662-58538045:-|nuORF	ENST00000083182.7_1_17:58533662-58538045:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	565.325871	1128.63719	0.17251	9.7522E-05	-3.1038	-0.0017547	-2.9313	-0.0016571	565.3240976511108	71.722	0.43524	71.781	71.518	71.953	0.058578	0.0017003	-0.00028856	NaN	10.183	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138220			25209	5778	16737	16897							0.07801586247410341
YLKLYHPE	8	Unmodified	_YLKLYHPE_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.7941284179688	2	531.784567	1061.55458	0.20125	0.00010702	-2.9639	-0.0015762	-2.7627	-0.0014691	531.7831000095451	51.85	0.24796	51.85	51.713	51.961	0					12	8	2	0	0	0	0.52502	1	10870	10870		9.3474	0	1	32406			25210	4061	16738	16898	33838	33838					0.026266444486054752
YLKLYHPE	8	Unmodified	_YLKLYHPE_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	531.784567	1061.55458	0.38054	0.00020237	-3.1256	-0.0016621	-2.745	-0.0014598	531.7830760629362	51.743	0.23081	51.813	51.71	51.941	0.069874	-0.018439	-0.00013272	NaN	9.3474	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46447			25211	4061	16738	16898							0.026266444486054752
YLKNNNLL	8	Unmodified	_YLKNNNLL_					0	0	0		tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.2822265625	2	496.282192	990.549831	0.062316	3.0926E-05	-0.13557	-6.7283E-05	-0.073258	-3.6356E-05	496.281997005677	32.95	0.50797	33.024	32.819	33.327	0.074322					36	20	2	0	0	0	0.53817	1	5089	5089		2.5775	0	1	49548			25212	13443	16739	16899	33839	33839					0.054177603058633395
YLKPSYAFG	9	Unmodified	_YLKPSYAFG_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4;ENST00000597277.1_9:43426178-43426727:-|nuORF	ENSG00000004478|ENST00000001008|FKBP4;ENST00000597277.1_9:43426178-43426727:-|nuORF	ENSG00000004478|ENST00000001008|FKBP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.781494140625	2	523.271293	1044.52803	0.36009	0.00018843	-1.9335	-0.0010117	-1.5734	-0.00082332	523.2703381683968	91.134	0.46165	91.134	90.973	91.435	0					19	15	2	0	0	0	0.24263	1	22818	22818		12.532	1.4171	1	163530			25213	333;7287	16740	16900	33840	33840					0.007549555572722966
YLKQPMRYM	9	Unmodified	_YLKQPMRYM_					0	0	0		ENST00000238508.7_1_18:61585232-61587031:+|nuORF	ENST00000238508.7_1_18:61585232-61587031:+|nuORF	ENST00000238508.7_1_18:61585232-61587031:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	410.54345703125	3	410.543833	1228.60967	-0.25792	-0.00010589	0.009079	3.7273E-06	-0.24884	-0.00010216	410.5439289094624	31.641	0.8791	31.715	31.226	32.105	0.07378					69	41	2	0	0	0	0.34197	1	4667	4667		1.1933	0.12188	1	38905			25214	5822	16741	16901	33841	33841					0.0045099165322426416
YLKSDEYFL	9	Unmodified	_YLKSDEYFL_					0	0	0			REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2914428710938	2	589.292422	1176.57029	0.41835	0.00024653	0.85272	0.0005025	1.2711	0.00074903	589.2925109961877	69.011	0.65627	69.074	68.793	69.449	0.062126					59	24	4	0	0	0	0.26684	1	16008	16008		10.824	1.4765	1	1391300	+		25215	8357	16742	16902	33842	33842					-0.01093113825004366
YLKTYYIT	8	Unmodified	_YLKTYYIT_					0	0	0		tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2688598632812	2	532.786776	1063.559	0.56456	0.00030079	1.1304	0.00060227	1.695	0.00090306	532.7872939198039	69.958	0.29943	69.958	69.791	70.09	0					16	10	2	0	0	0	0.3576	1	16387	16387		3.9444	0	1	82372			25216	13569	16743	16903	33843	33843					0.02976108871530414
YLKVKRNV	8	Unmodified	_YLKVKRNV_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8209533691406	2	510.321651	1018.62875	0.2942	0.00015014	0.078731	4.0178E-05	0.37293	0.00019032	510.32161196771364	105.94	0.050285	105.97	105.96	106.01	0.029739					8	5	2	0	0	0	0.3576	1	27122	27122		0.69038	0	1	25057			25217	6491	16744	16904	33844	33844					0.12018032330797723
YLKVSILRT	9	Unmodified	_YLKVSILRT_					0	0	0		ENST00000265271.6_1_5:145598648-145603040:+|nuORF	ENST00000265271.6_1_5:145598648-145603040:+|nuORF	ENST00000265271.6_1_5:145598648-145603040:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3441162109375	2	546.842416	1091.67028	-0.14288	-7.813E-05	0.011446	6.2593E-06	-0.13143	-7.1871E-05	546.8423650422557	26.606	0.33279	26.606	26.455	26.788	0					29	21	2	0	0	0	0.35102	1	3332	3332		0	0	1	17920			25218	5897	16745	16905	33845	33845					0.12811168299481324
YLKYLLEIL	9	Unmodified	_YLKYLLEIL_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3565063476562	2	584.354825	1166.6951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.348	1	87.348	86.848	87.848	0								0	0	0	0.28409	1	21702	21702		2.3027	0	1				25219	6952	16746	16906	33846	33846					0.1184180338218539
YLKYRQFPF	9	Unmodified	_YLKYRQFPF_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.2289123535156	3	421.229119	1260.66553	0.88579	0.00037312	-0.79364	-0.00033431	0.092144	3.8814E-05	421.2285988465467	65.901	0.74199	65.901	65.645	66.387	0					59	25	3	0	0	0	0.28587	1	15194	15194		5.2969	0	1	373150			25220	3536	16747	16907	33847	33847					0.04562284156691021
YLKYSNILL	9	Unmodified	_YLKYSNILL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.2496948242188	2	563.828975	1125.6434	0.4131	0.00023292	-2.0809	-0.0011733	-1.6678	-0.00094036	563.8278624670437	76.942	0.26646	76.981	76.825	77.092	0.03923					13	9	2	0	0	0	0.25416	1	18328	18328		5.2307	0	1	55915			25221	3475	16748	16908	33848	33848					0.08560059688284127
YLLACFYLL	9	Unmodified	_YLLACFYLL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8158569335938	2	559.801371	1117.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.951	1	76.991	76.491	77.491	0.03923								0	0	0	0.24995	1	18375	18375		9.3474	0	1				25222	1364	16749	16909	33849	33849					0.03409929896156427
YLLCALGLF	9	Unmodified	_YLLCALGLF_					0	0	0		ENST00000550385.1_1_12:102090725-102108674:+|nuORF;ENST00000546490.1_1_12:102091639-102108044:+|nuORF;CHPT1|p.F162Sfs*23|1|0.43|ENSG00000111666|chr12:101714560-101714560|T/-|frameshift_variant;nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.77960205078125	2	506.780439	1011.54633	0.46223	0.00023425	-1.6458	-0.00083404	-1.1835	-0.00059979	506.779324007391	99.522	0.28233	99.565	99.338	99.62	0.042839					32	19	2	0	0	0	0.237	1	25241	25241		14.582	0	1	109700			25223	135	16750	16910	33850	33850					0.04101374207641584
YLLCKYVYI	9	Unmodified	_YLLCKYVYI_					0	0	0			REV__ENST00000555682.1_1_14:39560581-39561747:-|nuORF	REV__ENST00000555682.1_1_14:39560581-39561747:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8073120117188	2	589.319928	1176.6253	0.39071	0.00023025	3.7709	0.0022223	4.1616	0.0024525	589.3221094974419	59.864	0.26039	59.936	59.756	60.016	0.072342					14	9	2	0	0	0	0.20004	1	13162	13162		23.148	0.41214	1	107690	+		25224	12459	16751	16911	33851	33851					0.04405601441908402
YLLCTVYL	8	Unmodified	_YLLCTVYL_					0	0	0		ENST00000372104.5_1_1:45804192-45805581:-|nuORF	ENST00000372104.5_1_1:45804192-45805581:-|nuORF	ENST00000372104.5_1_1:45804192-45805581:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.3012390136719	2	494.264622	986.514691	0.38586	0.00019072	0.088495	4.374E-05	0.47435	0.00023446	494.26670343452673	91.637	0.075134	91.673	91.644	91.719	0.035446					4	2	2	0	0	0	0.35042	1	22837	22837		19.439	0	1	19899			25225	6214	16752	16912	33852	33852					0.020893814536748323
YLLFSSVTI	9	Unmodified	_YLLFSSVTI_					0	0	0			REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.781494140625	2	521.794601	1041.57465	0.35191	0.00018363	-1.0754	-0.00056111	-0.72344	-0.00037749	521.794181639049	90.957	0.46104	90.957	90.808	91.269	0					32	15	3	0	0	0	0.17247	1	22818	22818		21.747	0	1	1117400	+		25226	12176	16753	16913	33853	33853					0.055523953885767696
YLLFSSVTI	9	Unmodified	_YLLFSSVTI_					0	0	0			REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.3287353515625	2	521.794601	1041.57465	0.35191	0.00018363	-1.0754	-0.00056111	-0.72344	-0.00037749	521.794181639049	90.957	0.46104	90.957	90.808	91.269	0					32	15	3	0	0	0	0.10508	1	22827	22827		42.095	0.25493	1	1117400	+		25227	12176	16753	16913	33854	33854					0.055523953885767696
YLLFSSVTI	9	Unmodified	_YLLFSSVTI_					0	0	0			REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.7816772460938	2	521.794601	1041.57465	0.054807	2.8598E-05	-1.2677	-0.00066146	-1.2129	-0.00063286	521.7940827330932	90.996	0.7009	91.031	90.797	91.498	0.035446					52	24	3	0	0	0	0.1182	1	22644	22644		28.487	1.6032	1	1450300	+		25228	12176	16753	16913	33855	33855					0.055523953885767696
YLLFSSVTI	9	Unmodified	_YLLFSSVTI_					0	0	0			REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.79443359375	2	521.794601	1041.57465	0.054807	2.8598E-05	-1.2677	-0.00066146	-1.2129	-0.00063286	521.7940827330932	90.996	0.7009	91.031	90.797	91.498	0.035446					52	24	3	0	0	0	0.10508	1	22629	22629		42.095	0.25493	1	1450300	+		25229	12176	16753	16913	33856	33856					0.055523953885767696
YLLFTSPQEN	10	Unmodified	_YLLFTSPQEN_					0	0	0		ENST00000480582.1_1_7:150555040-150557681:+|nuORF;ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000480582.1_1_7:150555040-150557681:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.3013916015625	2	606.300778	1210.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.365	1	80.389	79.889	80.889	0.023605								0	0	0	0.33528	1	19414	19414		5.7319	0.43497	1				25230	325	16754	16914	33857	33857					-0.009866129390275091
YLLGEFSDKP	10	Unmodified	_YLLGEFSDKP_					0	0	0			REV__ENST00000581786.5_1_17:30349314-30355958:+|nuORF	REV__ENST00000581786.5_1_17:30349314-30355958:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.3025512695312	2	584.797872	1167.58119	0.54062	0.00031616	-0.016041	-9.3806E-06	0.52458	0.00030677	584.7976960240895	58.595	1.0376	58.665	58.387	59.425	0.070477					83	38	4	0	0	0	0.43672	1	12748	12748		7.2892	0	1	591890	+		25231	10661	16755	16915	33858	33858					0.0041028854927844804
YLLHQRVRR	9	Unmodified	_YLLHQRVRR_					0	0	0		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.3077392578125	2	620.872905	1239.73126	-0.23454	-0.00014562	-0.37104	-0.00023037	-0.60558	-0.00037599	620.8726979602206	90.243	1.4743	90.277	90.109	91.583	0.034065					98	57	3	0	0	0	0.25416	1	22810	22810		5.2307	0.90143	1	822990			25232	1194	16756	16916	33859	33859					0.12098118122253254
YLLHQYISD	9	Unmodified	_YLLHQYISD_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-3|RADIL	REV__nc|ENSG00000157927|Q96JH8-3|RADIL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.7738647460938	2	576.290214	1150.56587	0.19888	0.00011461	-0.6058	-0.00034911	-0.40691	-0.0002345	576.2897153113119	59.301	0.61789	59.373	59.161	59.779	0.072338					31	24	2	0	0	0	0.29576	1	13059	13059		7.2892	0	1	163150	+		25233	9790	16757	16917	33860	33860					-0.0033857824791994062
YLLKWKGF	8	Unmodified	_YLLKWKGF_					0	0	0		ENSG00000094916|ENST00000209875|CBX5;ENSG00000108468|ENST00000225603|CBX1;ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENSG00000094916|ENST00000209875|CBX5	ENSG00000094916|ENST00000209875|CBX5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2901000976562	2	527.807845	1053.60114	0.18871	9.9604E-05	-2.4496	-0.0012929	-2.2609	-0.0011933	527.8064947185114	68.984	0.3896	69.046	68.821	69.211	0.062126					20	14	2	0	0	0	0.34473	1	15928	15928		22.453	11.338	1	139920			25234	1090	16758	16918	33861	33861					0.07648129070548748
YLLLFRIIGM	10	Unmodified	_YLLLFRIIGM_					0	0	0			REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF	REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.871826171875	2	619.87012	1237.72569	-0.25025	-0.00015512	-0.70575	-0.00043747	-0.95599	-0.00059259	619.8694370999674	86.96	0.72298	86.96	86.71	87.433	0					78	30	3	0	0	0	0.47288	1	21588	21588		0.45834	0.45834	1	634050	+		25235	12055	16759	16919	33862	33862					0.11633258495567134
YLLLHSLKE	9	Unmodified	_YLLLHSLKE_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3246459960938	2	558.326599	1114.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.613	1	37.698	37.198	38.198	0.084476								0	0	0	0.29233	1	6449	6449		0.6015	0	1				25236	1708	16760	16920	33863	33863					0.08591175545507213
YLLLMLDIL	9	Unmodified	_YLLLMLDIL_					0	0	0			REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8298950195312	2	553.830129	1105.6457	0.81445	0.00045107	-0.045856	-2.5396E-05	0.7686	0.00042567	553.8298574124558	84.543	3.0593	84.543	83.58	86.639	0					376	136	4	0	0	0	0.31136	3	20651	20651;20704;21304		5.2307	4.756	1	3436300	+		25237	12112	16761	16921	33864;33865;33866	33864					0.09710772101743714
YLLLMLDIL	9	Unmodified	_YLLLMLDIL_					0	0	0			REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8302001953125	2	553.830129	1105.6457	0.73021	0.00040441	-0.053685	-2.9733E-05	0.67652	0.00037468	553.8299023615916	84.66	3.085	84.683	83.617	86.702	0.023125					272	141	2	0	0	0	0.31136	1	20500	20500		5.2307	0	1	3956500	+		25238	12112	16761	16921	33867	33867					0.09710772101743714
YLLLTAEYF	9	Unmodified	_YLLLTAEYF_					0	0	0		ENST00000369248.8_1_10:116623463-116623577:+|nuORF	ENST00000369248.8_1_10:116623463-116623577:+|nuORF	ENST00000369248.8_1_10:116623463-116623577:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2789306640625	2	566.799883	1131.58521	0.41524	0.00023536	2.1138	0.0011981	2.5291	0.0014335	567.3026709595725	68.934	0.43495	68.934	68.669	69.104	0					26	16	2	0	0	0	0.2404	1	16102	16102		13.508	2.684	1	66037			25239	6191	16762	16922	33868	33868					0.02468378042999575
YLLPARFRM	9	Unmodified	_YLLPARFRM_					0	0	0			REV__ENSG00000142039|ENST00000269967|CCDC97	REV__ENSG00000142039|ENST00000269967|CCDC97	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.3106079101562	2	583.828786	1165.64302	0.49685	0.00029007	-1.7137	-0.0010005	-1.2168	-0.00071041	583.8276017212587	94.893	0.44705	94.893	94.747	95.194	0					21	18	2	0	0	0	0.24749	1	23980	23980		9.3474	1.4373	1	56054	+		25240	9420	16763	16923	33869	33869					0.06682361487423805
YLLPCLPLL	9	Unmodified	_YLLPCLPLL_					0	0	0			REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF	REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.812255859375	2	522.811739	1043.60893	0.31552	0.00016496	0.45129	0.00023594	0.76681	0.0004009	522.8118831365844	90.793	0.52084	90.793	90.602	91.122	0					33	18	2	0	0	0	0.2796	1	22766	22766		9.3474	0	1	252150	+		25241	11186	16764	16924	33870	33870					0.08886520275837029
YLLPCLPLL	9	Unmodified	_YLLPCLPLL_					0	0	0			REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF	REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.781494140625	2	522.811739	1043.60893	0.31552	0.00016496	0.45129	0.00023594	0.76681	0.0004009	522.8118831365844	90.793	0.52084	90.793	90.602	91.122	0					33	18	2	0	0	0	0.237	1	22818	22818		14.582	5.2343	1	252150	+		25242	11186	16764	16924	33871	33871					0.08886520275837029
YLLPCLPLL	9	Unmodified	_YLLPCLPLL_					0	0	0			REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF	REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	522.811739	1043.60893	-0.028872	-1.5095E-05	0.89517	0.000468	0.86629	0.00045291	522.8120643077095	90.747	0.588	90.782	90.581	91.169	0.035446	-0.0051804	0.00019235	NaN	9.3474	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360690	+		25243	11186	16764	16924							0.08886520275837029
YLLPGQKSPW	10	Unmodified	_YLLPGQKSPW_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.2901611328125	2	594.824224	1187.63389	0.17536	0.00010431	-1.4904	-0.00088651	-1.315	-0.0007822	594.8240038481391	89.025	0.10813	89.058	89.009	89.117	0.032265					5	3	2	0	0	0	0.31771	1	22056	22056		4.3292	0.73274	1	31557			25244	1765	16765	16925	33872	33872					0.04758291402731629
YLLPWSTLD	9	Unmodified	_YLLPWSTLD_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4;nc|ENSG00000168418|Q8TDN1-2|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.8056030273438	2	554.289682	1106.56481	0.39974	0.00022157	-1.8667	-0.0010347	-1.4669	-0.00081311	554.2889490634582	78.601	0.22617	78.601	78.479	78.705	0					9	7	2	0	0	0	0.2491	1	19011	19011		8.5933	2.8329	1	53576			25245	4289	16766	16926	33873	33873					0.01579207383178982
YLLQQFLS	8	Unmodified	_YLLQQFLS_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.23431396484375	2	506.279118	1010.54368	0.56077	0.0002839	-3.8606	-0.0019545	-3.2998	-0.0016706	506.2773979467112	54.751	0.43079	54.816	54.693	55.123	0.065128					26	18	2	0	0	0	0.3576	1	11597	11597		7.9102	0	1	93057	+		25246	7956	16767	16927	33874	33874					0.03883242074334703
YLLRNFNLF	9	Unmodified	_YLLRNFNLF_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.7251586914062	2	600.332216	1198.64988	0.11775	7.0691E-05	3.0674	0.0018414	3.1851	0.0019121	600.3338759251051	90.917	0.24744	90.953	90.797	91.045	0.035446					13	8	2	0	0	0	0.2491	1	22632	22632		8.5933	0.68312	1	54737			25247	478	16768	16928	33875	33875					0.05849997639643334
YLLSNKKIM	9	Unmodified	_YLLSNKKIM_					0	0	0		tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3223266601562	2	555.323002	1108.63145	-0.074247	-4.1231E-05	-0.21028	-0.00011677	-0.28452	-0.000158	555.3228611576195	43.032	0.53139	43.032	42.764	43.296	0					38	17	4	0	0	0	0.31136	1	8282	8282		5.2307	0	1	125650			25248	13662	16769	16929	33876	33876					0.0814811967343303
YLLSNKKIM	9	Unmodified	_YLLSNKKIM_					0	0	0		tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	555.323002	1108.63145	0.1204	6.6861E-05	-0.17768	-9.8671E-05	-0.057283	-3.181E-05	555.3229299610005	42.905	0.39829	42.995	42.838	43.236	0.089764	-0.018571	2.1061E-05	NaN	5.2307	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132250			25249	13662	16769	16929							0.0814811967343303
YLLSPSPLL	9	Unmodified	_YLLSPSPLL_					0	0	0			REV__ENST00000459708.1_1_1:85121010-85121631:-|nuORF	REV__ENST00000459708.1_1_1:85121010-85121631:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.7972106933594	2	501.797143	1001.57973	0.39344	0.00019743	0.16973	8.5169E-05	0.56317	0.0002826	501.79717784430983	94.328	0.40377	94.328	94.107	94.511	0					30	18	2	0	0	0	0.25209	1	23834	23834		12.532	0	1	148480	+		25250	11953	16770	16930	33877	33877					0.07900699251183596
YLLSPSPLL	9	Unmodified	_YLLSPSPLL_					0	0	0			REV__ENST00000459708.1_1_1:85121010-85121631:-|nuORF	REV__ENST00000459708.1_1_1:85121010-85121631:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	501.797143	1001.57973	0.33722	0.00016921	0.38115	0.00019126	0.71836	0.00036047	501.7973178491257	94.295	0.35557	94.333	94.144	94.5	0.038086	0.0023553	9.2385E-05	NaN	12.532	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125590	+		25251	11953	16770	16930							0.07900699251183596
YLLTYLSSH	9	Unmodified	_YLLTYLSSH_					0	0	0		ENST00000511410.5_1_5:140021383-140021704:+|nuORF;ENST00000505086.2_1_5:140019102-140021704:+|nuORF;ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENSG00000113119|ENST00000394671|TMCO6;nc|ENSG00000113119|Q96DC7-2|TMCO6	ENST00000511410.5_1_5:140021383-140021704:+|nuORF	ENST00000511410.5_1_5:140021383-140021704:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2695922851562	2	548.787307	1095.56006	0.60139	0.00033004	1.5362	0.00084306	2.1376	0.0011731	548.7880405775356	54.117	0.50547	54.182	53.894	54.399	0.065132					28	18	2	0	0	0	0.2298	1	11409	11409		16.942	1.1741	1	92503			25252	1786	16771	16931	33878	33878					0.016103232404248047
YLLWLGCYIV	10	Unmodified	_YLLWLGCYIV_					0	0	0			REV__ENST00000440625.5_1_7:112092117-112092201:+|nuORF	REV__ENST00000440625.5_1_7:112092117-112092201:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.833251953125	2	621.833203	1241.65185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.04	1	100.09	99.585	100.59	0.042839								0	0	0	0.29574	1	25403	25403		18.135	5.6034	1		+		25253	11883	16772	16932	33879	33879					0.04069290333268327
YLLYCDPCKF	10	Unmodified	_YLLYCDPCKF_					0	0	0			REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.1960144042969	3	422.196211	1263.5668	0.63652	0.00026874	-0.46517	-0.00019639	0.17135	7.2344E-05	422.19600597858107	63.096	0.73724	63.096	62.912	63.649	0					63	27	3	0	0	0	0.45313	1	14382	14382		4.1895	1.1943	1	752050	+		25254	11714	16773	16933	33880	33880					-0.0544382319487795
YLLYKYNL	8	Unmodified	_YLLYKYNL_					0	0	0		ENST00000314728.9_1_17:19239740-19240025:+|nuORF	ENST00000314728.9_1_17:19239740-19240025:+|nuORF	ENST00000314728.9_1_17:19239740-19240025:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2847900390625	2	545.302593	1088.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.596	1	96.636	96.136	97.136	0.039772								0	0	0	0.38822	1	24355	24355		13.508	3.434	1				25255	6014	16774	16934	33881	33881					0.049881016254630595
YLMRKWHP	8	Unmodified	_YLMRKWHP_					0	0	0		ENST00000557699.5_1_14:23818379-23821759:-|nuORF	ENST00000557699.5_1_14:23818379-23821759:-|nuORF	ENST00000557699.5_1_14:23818379-23821759:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.800537109375	2	565.800029	1129.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.57	1	18.57	18.07	19.07	0								0	0	0	0.38822	1	1156	1156		0	0	1				25256	7138	16775	16935	33882	33882					0.025895192818779833
YLMRMVKAL	9	Unmodified	_YLMRMVKAL_					0	0	0		nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-4|TAF6	nc|ENSG00000106290|P49848-4|TAF6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8076782226562	2	562.819573	1123.62459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.208	1	16.208	15.708	16.708	0								0	0	0	0.29525	1	690	690		0	0	1				25257	1514	16776	16936	33883	33883					0.06772483521240247
YLMTDEELI	9	Unmodified	_YLMTDEELI_					0	0	0		tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.7579345703125	2	563.770465	1125.52638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.345	1	81.345	80.845	81.845	0								0	0	0	0.23884	1	19873	19873		11.64	0	1				25258	13574	16777	16937	33884	33884					-0.031364663136173476
YLNESSGEEW	10	Unmodified	_YLNESSGEEW_					0	0	0		ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	607.2542114257812	2	607.254025	1212.4935	0.53838	0.00032693	0.57263	0.00034773	1.111	0.00067467	607.2544220932504	77.719	1.0337	77.719	77.478	78.512	0					98	35	5	0	0	0	0.42335	1	18738	18738		9.3831	1.473	1	1948500			25259	3885	16778	16938	33885	33885					-0.10424957112104494
YLNESVHID	9	Unmodified	_YLNESVHID_					0	0	0		nc|ENSG00000138760|Q14108-2|SCARB2;ENSG00000138760|ENST00000264896|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8038940429688	2	545.264196	1088.51384	0.5877	0.00032045	-1.9028	-0.0010375	-1.3151	-0.00071705	545.2630573764923	97.546	0.26006	97.546	97.481	97.741	0					16	10	2	0	0	0	0.24635	1	24795	24795		10.824	0	1	77121			25260	2936	16779	16939	33886	33886					-0.026877416616798655
YLNFATLYL	9	Unmodified	_YLNFATLYL_					0	0	0		ENSG00000133256|ENST00000496514|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.8173828125	2	559.30005	1116.58555	0.6178	0.00034553	-0.069389	-3.8809E-05	0.54841	0.00030672	559.3001617923653	77.921	0.146	77.956	77.88	78.026	0.034485					6	4	2	0	0	0	0.22344	1	18670	18670		15.847	0	1	23128			25261	2622	16780	16940	33887	33887					0.03191797762860915
YLNFEINL	8	Unmodified	_YLNFEINL_					0	0	0		tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2679443359375	2	513.26875	1024.52295	0.20613	0.0001058	-1.6628	-0.00085349	-1.4567	-0.00074769	513.2679118727708	71.739	0.54799	71.795	71.54	72.088	0.055931					32	19	2	0	0	0	0.51415	1	16790	16790		10.824	0	1	295780			25262	13616	16781	16941	33888	33888					0.011666516946434058
YLNGGDLMYHI	11	Unmodified	_YLNGGDLMYHI_					0	0	0		nc|ENSG00000065675|Q04759-3|PRKCQ;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ	nc|ENSG00000065675|Q04759-3|PRKCQ	nc|ENSG00000065675|Q04759-3|PRKCQ	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.30908203125	2	648.308081	1294.60161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.392	1	89.424	88.924	89.924	0.032257								0	0	0	0.32823	1	22159	22159		4.897	0.70751	1				25263	688	16782	16942	33889	33889					-0.03390864062544097
YLNIKDIFL	9	Unmodified	_YLNIKDIFL_					0	0	0		tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2559204101562	2	569.828975	1137.6434	0.28639	0.0001632	-0.40456	-0.00023053	-0.11817	-6.7336E-05	569.8292472324747	96.129	0.27045	96.129	96.048	96.318	0					21	11	3	0	0	0	0.2229	1	24425	24425		19.257	3.4098	1	144250			25264	13461	16783	16943	33890	33890					0.08008059688268077
YLNKGQFYPI	10	Unmodified	_YLNKGQFYPI_					0	0	0		ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENST00000497403.5_1_2:10101229-10104576:+|nuORF	ENSG00000134317|ENST00000324907|GRHL1	ENSG00000134317|ENST00000324907|GRHL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.790283203125	2	621.829506	1241.64446	0.0037173	2.3115E-06	-1.3167	-0.00081874	-1.313	-0.00081643	621.8286669581661	91.398	0.30417	91.434	91.308	91.612	0.035446					15	10	2	0	0	0	0.31456	1	22766	22766		14.838	5.4551	1	85806			25265	2658	16784	16944	33891	33891					0.03330274057202587
YLNKWFCF	8	Unmodified	_YLNKWFCF_					0	0	0			REV__ENST00000366744.5_1_1:228296168-228296940:-|nuORF	REV__ENST00000366744.5_1_1:228296168-228296940:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.3154907226562	2	560.767863	1119.52117	0.64133	0.00035964	-2.6299	-0.0014747	-1.9885	-0.0011151	561.2684089184414	98.988	0.1263	99.03	98.907	99.034	0.041931					10	8	2	0	0	0	0.3576	1	25056	25056		2.3027	0	1	33069	+		25266	11552	16785	16945	33892	33892					-0.033806805949552654
YLNPVLYAFL	10	Unmodified	_YLNPVLYAFL_					0	0	0		OPRM1|p.C332Y|1|0.18|ENSG00000112038|chr6:154091303-154091303|G/A|missense_variant	OPRM1|p.C332Y|1|0.18|ENSG00000112038|chr6:154091303-154091303|G/A|missense_variant	OPRM1|p.C332Y|1|0.18|ENSG00000112038|chr6:154091303-154091303|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.742919921875	2	606.8368	1211.65905	0.60823	0.0003691	-1.7106	-0.0010381	-1.1024	-0.00066896	606.8354776339837	101.85	0.60719	101.85	101.58	102.19	0					73	44	2	0	0	0	0.31691	1	26110	26110		7.2892	0	1	149990			25267	7652	16786	16946	33893	33893					0.0616834620532245
YLNQRLQFN	9	Unmodified	_YLNQRLQFN_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3031616210938	2	598.314554	1194.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.733	1	80.733	80.233	81.233	0								0	0	0	0.25992	1	19687	19687		7.2892	1.0834	1		+		25268	10147	16787	16947	33894	33894					0.025033351118509017
YLNRLGQTT	9	Unmodified	_YLNRLGQTT_					0	0	0			REV__ENSG00000121274|ENST00000561678|TENT4B	REV__ENSG00000121274|ENST00000561678|TENT4B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7745361328125	2	533.288005	1064.56146	0.38255	0.00020401	-0.8022	-0.00042781	-0.41966	-0.0002238	533.2877086707363	36.346	0.4801	36.428	36.259	36.739	0.081711					32	19	2	0	0	0	0.29576	1	6139	6139		7.2892	0	1	73295	+		25269	8895	16788	16948	33895	33895					0.03175957329199264
YLNRLGQTT	9	Unmodified	_YLNRLGQTT_					0	0	0			REV__ENSG00000121274|ENST00000561678|TENT4B	REV__ENSG00000121274|ENST00000561678|TENT4B	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	533.288005	1064.56146	0.38255	0.00020401	-0.8022	-0.00042781	-0.41966	-0.0002238	533.2877086707363	36.346	0.4801	36.428	36.259	36.739	0.081711	0.0012625	-0.00012794	NaN	7.2892	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73295	+		25270	8895	16788	16948							0.03175957329199264
YLNSNKLDF	9	Unmodified	_YLNSNKLDF_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2821655273438	2	557.282389	1112.55022	0.62026	0.00034566	-0.3671	-0.00020458	0.25316	0.00014108	557.2821635143218	67.479	0.70966	67.479	67.263	67.973	0					65	27	4	0	0	0	0.17247	1	15740	15740		21.747	0.20967	1	505260			25271	4716	16789	16949	33896	33896					-0.0015486476497699186
YLNSYKVIL	9	Unmodified	_YLNSYKVIL_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.792236328125	2	556.82115	1111.62775	0.75433	0.00042002	-1.2228	-0.00068087	-0.46846	-0.00026085	557.3221152258661	65.781	0.30396	65.848	65.57	65.874	0.066872					14	11	2	0	0	0	0.25051	1	14916	14916		7.9102	0	1	65681	+		25272	12894	16790	16950	33897	33897					0.07639773171240449
YLNVDRKLKK	10	Unmodified	_YLNVDRKLKK_					0	0	0		nc|ENSG00000105479|Q96M63-5|ODAD1;ENST00000474199.5_1_19:48800699-48823634:-|nuORF;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1	nc|ENSG00000105479|Q96M63-5|ODAD1	nc|ENSG00000105479|Q96M63-5|ODAD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.8896484375	2	638.890429	1275.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.23	1	104.27	103.77	104.77	0.03791								0	0	0	0.33892	1	26644	26644		1.4819	0.28856	1				25273	1473	16791	16951	33898	33898					0.13945316139552233
YLNVFSLNYF	10	Unmodified	_YLNVFSLNYF_					0	0	0		nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.3206787109375	2	640.321514	1278.62847	0.55297	0.00035408	-2.3076	-0.0014776	-1.7546	-0.0011235	640.3200513972479	83.883	0.3564	83.883	83.749	84.105	0					20	11	3	0	0	0	0.43972	1	20678	20678		6.7232	0.51738	1	151460			25274	1070	16792	16952	33899	33899					0.0003056782027215377
YLPDFLDYF	9	Unmodified	_YLPDFLDYF_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1;ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7816162109375	2	596.78169	1191.54883	0.022261	1.3285E-05	0.42051	0.00025095	0.44277	0.00026423	596.7817161004987	104.64	0.69007	104.64	104.41	105.1	0					152	64	3	0	0	0	0.0097093	1	26926	26926		68.081	52.234	1	825700			25275	5116;899	16793	16953	33900	33900					-0.039284988537247045
YLPDFLDYF	9	Unmodified	_YLPDFLDYF_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1;ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.7818603515625	2	596.78169	1191.54883	0.16895	0.00010083	0.31922	0.0001905	0.48817	0.00029133	596.7817299349075	104.56	0.61424	104.59	104.38	104.99	0.034004					151	62	4	0	0	0	0.01943	1	26737	26737		58.679	42.832	1	2044600			25276	5116;899	16793	16953	33901	33901					-0.039284988537247045
YLPPGWAA	8	Unmodified	_YLPPGWAA_					0	0	0		SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7264404296875	2	437.726521	873.438489	0.31174	0.00013646	-0.40808	-0.00017863	-0.096338	-4.217E-05	437.7261621636284	64.549	0.38734	64.618	64.428	64.815	0.068916					25	14	2	0	0	0	0.53257	1	14590	14590		6.3541	1.1234	1	115810			25277	13421	16794	16954	33902	33902					-0.0032925433143873306
YLPPGWAA	8	Unmodified	_YLPPGWAA_					0	0	0		SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	437.726521	873.438489	0.69681	0.00030501	-0.84808	-0.00037123	-0.15126	-6.6212E-05	437.726114275717	64.581	0.46336	64.581	64.457	64.92	0	-0.018515	-0.00013809	NaN	6.3541	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165720			25278	13421	16794	16954							-0.0032925433143873306
YLPPGWAA	8	Unmodified	_YLPPGWAA_					0	0	0		SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	437.726521	873.438489	0.31174	0.00013646	-0.40808	-0.00017863	-0.096338	-4.217E-05	437.7261621636284	64.549	0.38734	64.618	64.428	64.815	0.068916	0.018515	0.0002471	NaN	6.3541	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115810			25279	13421	16794	16954							-0.0032925433143873306
YLPPLFWRF	9	Unmodified	_YLPPLFWRF_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.8397827148438	2	619.839677	1237.6648	-0.14948	-9.2653E-05	0.4149	0.00025717	0.26542	0.00016452	619.839882167053	87.306	1.1312	87.306	87.008	88.139	0					102	42	4	0	0	0	0.05573	3	21646	21646;21691;21742		42.095	42.095	1	1206100			25280	1659	16795	16955	33903;33904;33905	33903					0.055474895076486064
YLPPLFWRF	9	Unmodified	_YLPPLFWRF_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.34130859375	2	619.839677	1237.6648	-0.13113	-8.1279E-05	0.38541	0.00023889	0.25428	0.00015761	619.8398457719339	87.181	0.82189	87.209	86.999	87.821	0.02758					83	32	4	0	0	0	0.083504	3	21509	21468;21509;21562		36.044	36.044	1	1146600			25281	1659	16795	16955	33906;33907;33908	33907					0.055474895076486064
YLPPPYML	8	Unmodified	_YLPPPYML_					0	0	0			REV__ENSG00000109511|ENST00000359299|ANXA10	REV__ENSG00000109511|ENST00000359299|ANXA10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.27813720703125	2	497.259339	992.504126	-0.010711	-5.3262E-06	0.31425	0.00015626	0.30354	0.00015094	497.25930649286977	26.53	0.24901	26.621	26.505	26.754	0.090376					30	19	2	0	0	0	0.54081	1	3134	3134		0.79363	0.10326	1	26695	+		25282	8644	16796	16956	33909	33909					0.0075739879926004505
YLPPTPGSEF	10	Unmodified	_YLPPTPGSEF_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;ENST00000472593.1_1_3:183521690-183528368:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.8050537109375	2	554.27149	1106.52843	0.55487	0.00030755	-1.6165	-0.00089601	-1.0617	-0.00058846	554.2696684333287	78.758	0.14714	78.788	78.738	78.885	0.030159					5	4	2	0	0	0	0.31794	1	18937	18937		3.5965	0.60125	1	40609			25283	3953	16797	16957	33910	33910					-0.020576695135332557
YLPQLSGMTQQ	11	Unmodified	_YLPQLSGMTQQ_					0	0	0			REV__ENSG00000122728|ENST00000242310|TAF1L	REV__ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.7373352050781	3	422.544667	1264.61217	0.12365	5.2248E-05	-0.48898	-0.00020662	-0.36533	-0.00015437	422.54487891738773	50.567	0.090481	50.64	50.579	50.669	0.07312					4	2	2	0	0	0	0.3105	1	10352	10352		2.6312	0	1	17282	+		25284	8920	16798	16958	33911	33911					-0.009548814081199453
YLPRNCPA	8	Unmodified	_YLPRNCPA_					0	0	0		ENST00000395066.7_1_15:74907479-74907686:+|nuORF	ENST00000395066.7_1_15:74907479-74907686:+|nuORF	ENST00000395066.7_1_15:74907479-74907686:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	467.2335510253906	2	467.234187	932.453822	0.20875	9.7533E-05	-1.3531	-0.0006322	-1.1443	-0.00053467	467.23355911451597	63.477	0.79234	63.549	63.323	64.115	0.071018					46	27	2	0	0	0	0.53771	1	14273	14273		2.8892	0	1	616690			25285	6332	16799	16959	33912	33912					-0.015107108058941776
YLPSIVITL	9	Unmodified	_YLPSIVITL_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7;ENST00000568469.5_1_16:19049201-19056398:+|nuORF	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.8128356933594	2	509.812793	1017.61103	0.43584	0.0002222	0.18187	9.2719E-05	0.61771	0.00031492	509.8126685418178	101.33	0.4698	101.38	101.07	101.54	0.042656					32	27	2	0	0	0	0.23216	1	25820	25820		14.838	2.3067	1	254130			25286	4400	16800	16960	33913	33913					0.10293272285287003
YLPSSFPVL	9	Unmodified	_YLPSSFPVL_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2607421875	2	511.781493	1021.54843	0.49338	0.0002525	-0.68005	-0.00034804	-0.18667	-9.5534E-05	511.78122104002557	82.68	0.36928	82.68	82.454	82.823	0					16	12	2	0	0	0	0.17491	1	20246	20246		28.487	10.352	1	76058			25287	1697	16801	16961	33914	33914					0.03852126217100249
YLPTLWVKL	9	Unmodified	_YLPTLWVKL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENST00000572932.1_1_16:16374097-16382502:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2975463867188	2	566.841885	1131.66922	0.39426	0.00022348	-0.31006	-0.00017575	0.084208	4.7732E-05	566.8415545428909	78.327	0.28028	78.357	78.225	78.505	0.030159					20	9	3	0	0	0	0.24635	1	18787	18787		10.824	2.9138	1	115890			25288	1358	16802	16962	33915	33915					0.1086495393055884
YLPYEHGPK	9	Unmodified	_YLPYEHGPK_					0	0	0		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2797241210938	2	552.279649	1102.54475	0.34685	0.00019156	-1.1091	-0.00061252	-0.76223	-0.00042096	552.279025513208	17.984	0.2435	18.068	17.963	18.206	0.083696					62	29	3	0	0	0	0.34704	1	982	982		0.52476	0	1	36126			25289	70	16803	16963	33916	33916					-0.0024254355676021078
YLQADFNLL	9	Unmodified	_YLQADFNLL_					0	0	0		ENSG00000178235|ENST00000674365|SLITRK1	ENSG00000178235|ENST00000674365|SLITRK1	ENSG00000178235|ENST00000674365|SLITRK1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2608642578125	2	548.787307	1095.56006	0.66065	0.00036256	2.7021	0.0014829	3.3628	0.0018454	548.7889200759722	80.2	0.39063	80.223	79.988	80.379	0.023613					30	13	3	0	0	0	0.11557	1	19364	19364		41.84	9.0539	1	225450			25290	4739	16804	16964	33917	33917					0.016103232404248047
YLQDNHLFFSL	11	Unmodified	_YLQDNHLFFSL_					0	0	0			REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	466.2349548339844	3	466.23471	1395.6823	0.5593	0.00026077	-0.14722	-6.864E-05	0.41208	0.00019213	466.23463524831044	54.734	1.1718	54.734	54.52	55.692	0					97	46	4	0	0	0	0.3217	2	11754	11754;11798		15.538	4.4732	1	472730	+		25291	9231	16805	16965	33918;33919	33918					0.0002874025196888397
YLQDNHLFFSL	11	Unmodified	_YLQDNHLFFSL_					0	0	0			REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	466.23468017578125	3	466.23471	1395.6823	0.40755	0.00019001	-0.13159	-6.1352E-05	0.27596	0.00012866	466.234645924079	54.749	0.75336	54.814	54.582	55.335	0.065128					82	32	4	0	0	0	0.28294	3	11639	11593;11639;11694		19.987	7.7593	1	671000	+		25292	9231	16805	16965	33920;33921;33922	33921					0.0002874025196888397
YLQDNHLFFSL	11	Unmodified	_YLQDNHLFFSL_					0	0	0			REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	466.23471	1395.6823	0.5593	0.00026077	-0.14722	-6.864E-05	0.41208	0.00019213	466.23463524831044	54.734	1.1718	54.734	54.52	55.692	0	-0.040048	-1.5126E-05	NaN	19.987	97	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472730	+		25293	9231	16805	16965							0.0002874025196888397
YLQDNHLFFSL	11	Unmodified	_YLQDNHLFFSL_					0	0	0			REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	466.23471	1395.6823	0.40755	0.00019001	-0.13159	-6.1352E-05	0.27596	0.00012866	466.234645924079	54.749	0.75336	54.814	54.582	55.335	0.065128	0.040048	6.7387E-06	NaN	19.987	82	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671000	+		25294	9231	16805	16965							0.0002874025196888397
YLQLTNMPFI	10	Unmodified	_YLQLTNMPFI_					0	0	0		ENST00000412976.1_1_10:65929632-65930097:-|nuORF;ENSG00000006634|ENST00000265728|DBF4	ENST00000412976.1_1_10:65929632-65930097:-|nuORF	ENST00000412976.1_1_10:65929632-65930097:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.30712890625	2	620.325742	1238.63693	0.11764	7.2977E-05	-3.2018	-0.0019861	-3.0841	-0.0019132	620.8250007440906	96.534	0.17371	96.574	96.483	96.657	0.039772					12	8	2	0	0	0	0.43672	1	24327	24327		7.2892	0	1	37551			25295	372	16806	16966	33923	33923					0.027157984652603773
YLQNLFSLS	9	Unmodified	_YLQNLFSLS_					0	0	0		ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2586669921875	2	542.787307	1083.56006	0.20932	0.00011361	0.80951	0.00043939	1.0188	0.00055301	542.7873987780588	52.35	0.7066	52.35	52.134	52.841	0					55	24	3	0	0	0	0.25174	1	11176	11176		7.2892	0	1	220550			25296	4712	16807	16967	33924	33924					0.02162323240418118
YLQNLFSLS	9	Unmodified	_YLQNLFSLS_					0	0	0		ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.787307	1083.56006	0.3502	0.00019008	0.15976	8.6717E-05	0.50996	0.0002768	542.7874836839063	52.291	0.62955	52.358	52.142	52.772	0.067173	0.0041638	-0.00013778	NaN	7.2892	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200380			25297	4712	16807	16967							0.02162323240418118
YLQQQAKL	8	Unmodified	_YLQQQAKL_					0	0	0		ENSG00000171956|ENST00000396057|FOXB1	ENSG00000171956|ENST00000396057|FOXB1	ENSG00000171956|ENST00000396057|FOXB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.28179931640625	2	496.282192	990.549831	0.062316	3.0926E-05	-0.13557	-6.7283E-05	-0.073258	-3.6356E-05	496.281997005677	32.95	0.50797	33.024	32.819	33.327	0.074322					36	20	2	0	0	0	0.53345	1	5040	5040		5.7604	0	1	49548			25298	4473	16808	16968	33925	33925					0.054177603058633395
YLQSKSTF	8	Unmodified	_YLQSKSTF_					0	0	0			REV__ZNF585A|p.H454Y|1|0.35|ENSG00000196967|chr19:37152539-37152539|G/A|missense_variant	REV__ZNF585A|p.H454Y|1|0.35|ENSG00000196967|chr19:37152539-37152539|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	487.2524719238281	2	487.2531	972.491647	0.30875	0.00015044	-0.49025	-0.00023888	-0.1815	-8.8435E-05	487.252643322784	57.508	0.27139	57.508	57.408	57.679	0					13	9	2	0	0	0	0.52502	1	12623	12623		9.3474	0.75416	1	61775	+		25299	13343	16809	16969	33926	33926					0.0043007866058815125
YLRASELSL	9	Unmodified	_YLRASELSL_					0	0	0		ENST00000576606.5_1_18:3594116-3597223:+|nuORF;ENST00000317114.1_1_18:3596827-3597223:+|nuORF	ENST00000576606.5_1_18:3594116-3597223:+|nuORF	ENST00000576606.5_1_18:3594116-3597223:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.281982421875	2	526.292756	1050.57096	0.52613	0.0002769	2.7152	0.001429	3.2413	0.0017059	526.2933123047868	64.737	0.6168	64.737	64.328	64.945	0					27	22	2	0	0	0	0.12809	1	14810	14810		26.884	3.7352	1	73934			25300	6020	16810	16970	33927	33927					0.04769725614710296
YLRASELSL	9	Unmodified	_YLRASELSL_					0	0	0		ENST00000576606.5_1_18:3594116-3597223:+|nuORF;ENST00000317114.1_1_18:3596827-3597223:+|nuORF	ENST00000576606.5_1_18:3594116-3597223:+|nuORF	ENST00000576606.5_1_18:3594116-3597223:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	526.292756	1050.57096	0.34462	0.00018137	5.1487	0.0027097	5.4933	0.0028911	526.295057327755	64.555	0.38904	64.624	64.478	64.867	0.068916	-0.056313	0.0012511	NaN	26.884	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65934			25301	6020	16810	16970							0.04769725614710296
YLREETCHYI	10	Unmodified	_YLREETCHYI_					0	0	0			REV__ENST00000588167.1_1_18:12009921-12028151:+|nuORF	REV__ENST00000588167.1_1_18:12009921-12028151:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.8766784667969	3	442.876417	1325.60742	0.49476	0.00021912	0.10967	4.8572E-05	0.60443	0.00026769	442.876340620045	53.471	1.113	53.471	53.234	54.347	0					86	42	3	0	0	0	0.44253	1	11370	11370		6.1918	1.4759	1	284920	+		25302	9396	16811	16971	33928	33928					-0.04235765550879478
YLREPRNF	8	Unmodified	_YLREPRNF_					0	0	0			REV__nc|ENSG00000140873|Q8TE60-2|ADAMTS18	REV__nc|ENSG00000140873|Q8TE60-2|ADAMTS18	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.332763671875	2	547.790715	1093.56688	0.61518	0.00033699	2.0363	0.0011155	2.6515	0.0014525	547.7918364712955	97.598	0.28017	97.598	97.461	97.741	0					16	12	2	0	0	0	0.3576	1	24855	24855		5.2307	0.47466	1	45584	+		25303	9385	16812	16972	33929	33929					0.02383680911657393
YLREVPDR	8	Unmodified	_YLREVPDR_					0	0	0			REV__nc|ENSG00000182022|Q7LFX5-2|CHST15	REV__nc|ENSG00000182022|Q7LFX5-2|CHST15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7589721679688	2	524.282723	1046.55089	-0.42905	-0.00022494	0.84331	0.00044214	0.41426	0.00021719	524.2831208764085	42.009	0.2167	42.099	41.994	42.21	0.089764					11	8	2	0	0	0	0.3576	1	7775	7775		0.52476	0	1	19065	+		25304	10549	16813	16973	33930	33930					0.02947974674748366
YLRLDGNEI	9	Unmodified	_YLRLDGNEI_					0	0	0		ENSG00000139330|ENST00000266719|KERA	ENSG00000139330|ENST00000266719|KERA	ENSG00000139330|ENST00000266719|KERA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7561645507812	2	546.787838	1091.56112	0.25269	0.00013817	-0.44398	-0.00024276	-0.19128	-0.00010459	546.788286563228	48.411	0.26494	48.411	48.311	48.576	0					10	8	2	0	0	0	0.2298	1	9865	9865		16.942	0	1	44130			25305	2967	16814	16974	33931	33931					0.01900537609321873
YLRLKFLI	8	Unmodified	_YLRLKFLI_					0	0	0		ENSG00000156299|ENST00000541036|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.6300048828125	2	533.344595	1064.67464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.85	1	102.89	102.39	103.39	0.040916								0	0	0	0.38822	1	26249	26249		0.79363	0	1				25306	3617	16815	16975	33932	33932					0.1448867751303169
YLRMPPFSW	9	Unmodified	_YLRMPPFSW_					0	0	0			REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3472900390625	2	598.799694	1195.58484	0.48773	0.00029206	2.852	0.0017078	3.3398	0.0019998	598.8020045215462	84.715	0.16546	84.738	84.691	84.856	0.023132					12	8	2	0	0	0	0.23975	1	20765	20765		14.838	2.3067	1	196810	+		25307	10766	16816	16976	33933	33933					-0.005133201578473745
YLRMPPFSW	9	Unmodified	_YLRMPPFSW_					0	0	0			REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8451538085938	2	598.799694	1195.58484	0.4151	0.00024856	0.76166	0.00045608	1.1768	0.00070464	598.8000498015498	84.492	0.36446	84.515	84.343	84.708	0.023125					53	31	2	0	0	0	0.17491	1	20631	20631		28.487	0	1	1336800	+		25308	10766	16816	16976	33934	33934					-0.005133201578473745
YLRQLELF	8	Unmodified	_YLRQLELF_					0	0	0		ENST00000344823.9_1_16:3451289-3451709:+|nuORF	ENST00000344823.9_1_16:3451289-3451709:+|nuORF	ENST00000344823.9_1_16:3451289-3451709:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7577514648438	2	541.305667	1080.59678	0.54965	0.00029753	-0.055028	-2.9787E-05	0.49462	0.00026774	541.3054210235773	64.096	0.74609	64.167	63.945	64.691	0.071022					44	26	2	0	0	0	0.32976	1	14448	14448		34.102	0	1	354230			25309	6101	16817	16977	33935	33935					0.05970619856975645
YLRSDMKQL	9	Unmodified	_YLRSDMKQL_					0	0	0			REV__nc|ENSG00000078725|O60477-3|BRINP1	REV__nc|ENSG00000078725|O60477-3|BRINP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.3057861328125	2	577.305341	1152.59613	-0.11556	-6.6715E-05	-0.029371	-1.6956E-05	-0.14493	-8.3671E-05	577.3053206851154	43.357	0.9461	43.357	42.999	43.945	0					58	33	3	0	0	0	0.22083	1	8254	8254		16.149	0	1	98708	+		25310	7741	16818	16978	33936	33936					0.025934571456446065
YLRSVGDGE	9	Unmodified	_YLRSVGDGE_					0	0	0		ENSG00000065978|ENST00000321358|YBX1;ENST00000566722.1_1_16:31580383-31580761:-|nuORF;ENST00000542002.5_1_12:10853889-10868397:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7841491699219	2	498.243264	994.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.048	1	88.048	87.548	88.548	0								0	0	0	0.27613	1	21914	21914		3.9444	1.0552	1				25311	691	16819	16979	33937	33937					-0.025482973501766537
YLRTSNLQE	9	Unmodified	_YLRTSNLQE_					0	0	0		nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1	nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1	nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8108520507812	2	562.290745	1122.56694	0.048388	2.7208E-05	2.2814	0.0012828	2.3298	0.00131	562.2920340896329	73.059	0.53831	73.059	72.775	73.313	0					40	18	3	0	0	0	0.19398	1	17265	17265		19.257	3.4098	1	225360			25312	1256	16820	16980	33938	33938					0.010556361209864917
YLRVVEPP	8	Unmodified	_YLRVVEPP_					0	0	0			REV__ENSG00000214491|ENST00000402034|SEC14L6	REV__ENSG00000214491|ENST00000402034|SEC14L6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7793273925781	2	486.779285	971.544017	0.27455	0.00013365	-0.23172	-0.0001128	0.042832	2.085E-05	486.7791311472624	70.166	0.41238	70.227	70.065	70.477	0.060562					28	16	2	0	0	0	0.40691	1	16319	16319		25.399	0.72543	1	228820	+		25313	11005	16821	16981	33939	33939					0.057106617941940385
YLRVVLLCA	9	Unmodified	_YLRVVLLCA_					0	0	0		ENSG00000177938|ENST00000317658|CAPZA3	ENSG00000177938|ENST00000317658|CAPZA3	ENSG00000177938|ENST00000317658|CAPZA3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.3001708984375	2	525.312438	1048.61032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.81	1	54.875	54.375	55.375	0.065128								0	0	0	0.24995	1	11643	11643		9.3474	0.75416	1				25314	4724	16822	16982	33940	33940					0.08796154364586073
YLSAFLSSSL	10	Unmodified	_YLSAFLSSSL_					0	0	0		ENST00000482172.5_1_13:21205203-21245170:+|nuORF	ENST00000482172.5_1_13:21205203-21245170:+|nuORF	ENST00000482172.5_1_13:21205203-21245170:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.803955078125	2	544.28714	1086.55973	0.59046	0.00032138	0.014931	8.1268E-06	0.60539	0.00032951	544.2871940449246	97.28	0.55547	97.321	97.076	97.632	0.040855					46	26	2	0	0	0	0.41688	1	24621	24621		10.074	0	1	143410			25315	6756	16823	16983	33941	33941					0.01990903520595566
YLSAPERE	8	Unmodified	_YLSAPERE_					0	0	0		NKX2-8|p.A118_L121del|1|0.17|ENSG00000136327|chr14:36581260-36581271|AGCAGGCTCGCC/-|inframe_deletion;ENSG00000136327|ENST00000258829|NKX2-8;ENSG00000125820|ENST00000377142|NKX2-2;ENSG00000180053|ENST00000325017|NKX2-6;ENSG00000125816|ENST00000351817|NKX2-4;ENSG00000119919|ENST00000344586|NKX2-3;nc|ENSG00000136352|P43699|NKX2-1;ENSG00000136352|ENST00000354822|NKX2-1	NKX2-8|p.A118_L121del|1|0.17|ENSG00000136327|chr14:36581260-36581271|AGCAGGCTCGCC/-|inframe_deletion	NKX2-8|p.A118_L121del|1|0.17|ENSG00000136327|chr14:36581260-36581271|AGCAGGCTCGCC/-|inframe_deletion	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2608337402344	2	482.740357	963.46616	-0.20735	-0.0001001	0.10864	5.2443E-05	-0.098718	-4.7655E-05	482.7403556880031	45.582	0.25175	45.667	45.475	45.727	0.085621					10	8	2	0	0	0	0.3576	1	8799	8799		2.3027	0	1	41568			25316	2098	16824	16984	33942	33942					-0.017033958618526412
YLSDDAVQEL	10	Unmodified	_YLSDDAVQEL_					0	0	0			REV__ENSG00000185156|ENST00000329805|MFSD6L	REV__ENSG00000185156|ENST00000329805|MFSD6L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2056884765625	2	576.774593	1151.53463	0.39404	0.00022727	-3.9677	-0.0022884	-3.5736	-0.0020612	576.7734682488075	61.165	0.69822	61.165	60.72	61.418	0					49	24	3	0	0	0	0.31691	1	13587	13587		7.2892	0	1	141880	+		25317	10660	16825	16985	33943	33943					-0.03507196072678198
YLSDDEDML	9	Unmodified	_YLSDDEDML_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF;HSPG2|p.S51L|1|0.35|ENSG00000142798|chr1:21896222-21896222|G/A|missense_variant	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2782592773438	2	550.726255	1099.43796	0.28785	0.00015853	2.1692	0.0011946	2.4571	0.0013532	550.7271787144612	71.813	0.38492	71.869	71.732	72.117	0.055939					22	13	2	0	0	0	0.25579	1	16815	16815		4.3292	0	1	179290			25318	3123	16826	16986	33944	33944					-0.10778506624114925
YLSDWILHG	9	Unmodified	_YLSDWILHG_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF;nc|ENSG00000132837|Q9UI17-2|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2796630859375	2	552.279649	1102.54475	-0.24828	-0.00013712	-0.26834	-0.0001482	-0.51662	-0.00028532	552.279388467759	18.102	0.30501	18.102	17.975	18.28	0					64	37	2	0	0	0	0.34704	1	1036	1036		0.52476	0	1	28057			25319	2599	16827	16987	33945	33945					-0.0024254355676021078
YLSEAREFL	9	Unmodified	_YLSEAREFL_					0	0	0			REV__nc|ENSG00000148925|Q9BSF8-2|BTBD10	REV__nc|ENSG00000148925|Q9BSF8-2|BTBD10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2174072265625	2	564.290214	1126.56587	0.59033	0.00033312	1.0557	0.00059572	1.646	0.00092883	564.2905367057982	84.669	1.2722	84.692	84.522	85.794	0.023132					72	59	2	0	0	0	0.23975	1	21036	21036		10.074	2.1638	1	361110	+		25320	12808	16828	16988	33946	33946					0.007654217520894235
YLSELHPQL	9	Unmodified	_YLSELHPQL_					0	0	0		ENST00000533515.5_1_11:57263521-57267149:-|nuORF;ENST00000278426.7_2_11:57263521-57268513:-|nuORF	ENST00000533515.5_1_11:57263521-57267149:-|nuORF	ENST00000533515.5_1_11:57263521-57267149:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2943725585938	2	550.292756	1098.57096	0.6169	0.00033947	1.7324	0.00095333	2.3493	0.0012928	550.2936215194818	92.305	0.56641	92.305	92.088	92.654	0					51	21	4	0	0	0	0.15282	3	23179	23179;23225;23259		24.021	5.1039	1	472820			25321	5925	16829	16989	33947;33948;33949	33947					0.025617256147143053
YLSEVFNRLC	10	Unmodified	_YLSEVFNRLC_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.2946166992188	2	622.310623	1242.60669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.724	1	71.782	71.282	72.282	0.058334								0	0	0	0.31183	1	16777	16777		16.149	2.2431	1		+		25322	8179	16830	16990	33950	33950					-0.0049056019993258815
YLSIWTELQ	9	Unmodified	_YLSIWTELQ_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.7556762695312	2	576.800414	1151.58628	0.52606	0.00030343	-0.0072832	-4.2009E-06	0.51878	0.00029923	576.8003789089988	55.14	1.2373	55.14	54.798	56.035	0					104	44	3	0	0	0	0.25504	1	11822	11822		4.756	0	1	159310			25323	2520	16831	16991	33951	33951					0.01654592411887279
YLSIYHIFL	9	Unmodified	_YLSIYHIFL_					0	0	0			REV__tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	REV__tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3566284179688	2	584.823692	1167.63283	0.56698	0.00033158	0.26757	0.00015648	0.83455	0.00048806	585.3250731544653	87.523	0.22886	87.523	87.374	87.603	0					10	8	2	0	0	0	0.24263	1	21778	21778		12.532	1.7076	1	64783	+		25324	13035	16832	16992	33952	33952					0.05572077033843925
YLSKGKQVQL	10	Unmodified	_YLSKGKQVQL_					0	0	0			REV__ENSG00000160785|ENST00000359511|SLC25A44	REV__ENSG00000160785|ENST00000359511|SLC25A44	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.345458984375	2	582.342781	1162.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.116	1	66.116	65.616	66.616	0								0	0	0	0.32245	1	15226	15226		14.838	4.0143	1		+		25325	9857	16833	16993	33953	33953					0.09617962948527747
YLSLWDALK	9	Unmodified	_YLSLWDALK_					0	0	0		ENST00000529077.5_1_11:134236970-134242406:+|nuORF;ENSG00000149328|ENST00000535456|GLB1L2	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.79296875	2	554.8055	1107.59645	0.55209	0.0003063	-0.22117	-0.00012271	0.33092	0.0001836	554.8054106825175	56.742	0.46093	56.809	56.657	57.118	0.066452					29	16	3	0	0	0	0.18364	1	12264	12264		20.454	0	1	171280			25326	3401	16834	16994	33954	33954					0.04695200137120992
YLSMKIVKP	9	Unmodified	_YLSMKIVKP_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.80615234375	2	539.820095	1077.62564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.473	1	64.473	63.973	64.973	0								0	0	0	0.19239	1	14724	14724		19.257	3.4098	1				25327	2894	16835	16995	33955	33955					0.08993021161791148
YLSPLHFPQF	10	Unmodified	_YLSPLHFPQF_					0	0	0		MAGEC1|p.S720Y|1|0.08|ENSG00000155495|chrX:141907563-141907563|C/A|missense_variant	MAGEC1|p.S720Y|1|0.08|ENSG00000155495|chrX:141907563-141907563|C/A|missense_variant	MAGEC1|p.S720Y|1|0.08|ENSG00000155495|chrX:141907563-141907563|C/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.8769836425781	3	416.885241	1247.63389	0.58968	0.00024583	-0.6796	-0.00028332	-0.089919	-3.7486E-05	416.8848506581058	62.47	1.4776	62.47	62.255	63.733	0					121	54	4	0	0	0	0.31794	1	14058	14058		4.1895	0	1	1416700			25328	7426	16836	16996	33956	33956					0.01998291402742325
YLSRQKPHKC	10	Unmodified	_YLSRQKPHKC_					0	0	0		nc|ENSG00000090612|Q14587-3|ZNF268;ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant;nc|ENSG00000090612|Q14587-2|ZNF268;ENST00000536899.6_1_12:133758152-133781113:+|nuORF;ENSG00000090612|ENST00000536435|ZNF268	nc|ENSG00000090612|Q14587-3|ZNF268	nc|ENSG00000090612|Q14587-3|ZNF268	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.337646484375	2	630.337507	1258.66046	0.44575	0.00028097	-0.48176	-0.00030367	-0.036012	-2.27E-05	630.3370930060497	53.604	0.58081	53.669	53.482	54.063	0.06543					65	24	4	0	0	0	0.44246	1	11382	11382		6.2058	0.47393	1	704430			25329	1044	16837	16997	33957	33957					0.041476570224403986
YLSTDKEGL	9	Unmodified	_YLSTDKEGL_					0	0	0			REV__PSMD2|p.E111Gfs*29|1|0.06|ENSG00000175166|chr3:184300417-184300418|-/GGTCCTCGGACTCCTAGGCTCAA|frameshift_variant	REV__PSMD2|p.E111Gfs*29|1|0.06|ENSG00000175166|chr3:184300417-184300418|-/GGTCCTCGGACTCCTAGGCTCAA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	513.259765625	2	513.261122	1024.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.367	1	86.367	85.867	86.867	0								0	0	0	0.25692	1	21401	21401		7.9102	0	1		+		25330	10373	16838	16998	33958	33958					-0.003582598931643588
YLSTLRWFQ	9	Unmodified	_YLSTLRWFQ_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.3505249023438	2	607.321848	1212.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.93	1	61.004	60.504	61.504	0.073421								0	0	0	0.27427	1	13504	13504		4.3292	0.73274	1				25331	322	16839	16999	33959	33959					0.031334072599975116
YLSWRHNI	8	Unmodified	_YLSWRHNI_					0	0	0		ENST00000461777.1_1_X:14891644-14911041:+|nuORF;ENSG00000130150|ENST00000380492|MOSPD2	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.8038330078125	2	544.785433	1087.55631	0.51435	0.00028021	-0.35967	-0.00019594	0.15468	8.427E-05	545.2852334939746	97.172	0.52972	97.172	96.908	97.438	0					48	25	3	0	0	0	0.52502	1	24750	24750		9.3474	0	1	63621			25332	2452	16840	17000	33960	33960					0.016036982572359193
YLTEAAIFR	9	Unmodified	_YLTEAAIFR_					0	0	0		ENST00000402141.1_1_6:143757385-143757844:+|nuORF	ENST00000402141.1_1_6:143757385-143757844:+|nuORF	ENST00000402141.1_1_6:143757385-143757844:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7584228515625	2	542.295299	1082.57605	0.70279	0.00038112	0.41055	0.00022264	1.1133	0.00060376	542.2950847881397	65.591	0.76169	65.591	65.344	66.106	0					52	27	3	0	0	0	0.2418	1	15201	15201		13.906	3.7227	1	285850			25333	6367	16841	17001	33961	33961					0.038060294773458736
YLTEAAIFR	9	Unmodified	_YLTEAAIFR_					0	0	0		ENST00000402141.1_1_6:143757385-143757844:+|nuORF	ENST00000402141.1_1_6:143757385-143757844:+|nuORF	ENST00000402141.1_1_6:143757385-143757844:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	542.295299	1082.57605	0.58685	0.00031824	0.016929	9.1806E-06	0.60378	0.00032742	542.295375904495	65.586	0.52107	65.653	65.45	65.971	0.066872	0.031071	-0.00011401	NaN	13.906	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379380			25334	6367	16841	17001							0.038060294773458736
YLTEQEDEQ	9	Unmodified	_YLTEQEDEQ_					0	0	0		nc|ENSG00000085185|Q5H9F3-1|BCORL1;BCORL1|p.P1681Qfs*20|1|0.89|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant;ENSG00000085185|ENST00000540052|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7654418945312	2	577.746033	1153.47751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.213	1	56.28	55.78	56.78	0.066452								0	0	0	0.26267	1	12070	12070		6.7232	0.51738	1				25335	87	16842	17002	33962	33962					-0.09308663349020208
YLTFVHEEI	9	Unmodified	_YLTFVHEEI_					0	0	0			REV__ENSG00000176896|ENST00000696128|TCEANC	REV__ENSG00000176896|ENST00000696128|TCEANC	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7926025390625	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.945	1	80.945	80.445	81.445	0								0	0	0	0.25692	1	19751	19751		7.9102	1.187	1		+		25336	10413	16843	17003	33963	33963					0.0018230589485028759
YLTFVINSF	9	Unmodified	_YLTFVINSF_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|237|1|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|237|1|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.3268432617188	2	552.292225	1102.5699	0.69221	0.0003823	1.2981	0.00071694	1.9903	0.0010992	552.2935790819116	70.365	0.20437	70.426	70.332	70.536	0.060562					9	6	2	0	0	0	0.2491	1	16385	16385		8.5933	0	1	67661	+		25337	12713	16844	17004	33964	33964					0.02271511245817237
YLTGFPSPAF	10	Unmodified	_YLTGFPSPAF_					0	0	0			REV__nc|ENSG00000104059|O60320-2|ENTREP2	REV__nc|ENSG00000104059|O60320-2|ENTREP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.79248046875	2	550.276575	1098.5386	0.55796	0.00030703	0.35012	0.00019266	0.90808	0.0004997	550.2767400885821	93.766	0.59991	93.804	93.313	93.913	0.037369					27	23	2	0	0	0	0.31288	1	23393	23393		15.847	0	1	95075	+		25338	8493	16845	17005	33965	33965					-0.0067306178827948315
YLTGIIITP	9	Unmodified	_YLTGIIITP_					0	0	0		ENST00000287936.8_1_5:74650421-74650884:+|nuORF	ENST00000287936.8_1_5:74650421-74650884:+|nuORF	ENST00000287936.8_1_5:74650421-74650884:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7971496582031	2	495.797143	989.579734	0.12178	6.0379E-05	0.30606	0.00015175	0.42785	0.00021212	495.79723668784015	90.686	0.83045	90.721	90.424	91.254	0.035446					93	31	4	0	0	0	0.29576	1	22685	22685		7.2892	0	1	2909200			25339	5942	16846	17006	33966	33966					0.0845269925117691
YLTIKEGKF	9	Unmodified	_YLTIKEGKF_					0	0	0		tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1	tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1	tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.8011474609375	2	549.813325	1097.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.191	1	36.191	35.691	36.691	0								0	0	0	0.28527	1	6145	6145		2.0598	1.2661	1				25340	13628	16847	17007	33967	33967					0.06719486654174034
YLTKTLYY	8	Unmodified	_YLTKTLYY_					0	0	0			REV__ENSG00000105538|ENST00000222145|RASIP1	REV__ENSG00000105538|ENST00000222145|RASIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.742919921875	2	532.786776	1063.559	-0.27346	-0.00014569	-0.20071	-0.00010694	-0.47417	-0.00025263	532.7866739904305	20.091	0.37709	20.091	19.965	20.342	0					60	36	3	0	0	0	0.3576	1	1505	1505		0.79363	0.10326	1	35217	+		25341	8545	16848	17008	33968	33968					0.02976108871530414
YLTKTLYY	8	Unmodified	_YLTKTLYY_					0	0	0			REV__ENSG00000105538|ENST00000222145|RASIP1	REV__ENSG00000105538|ENST00000222145|RASIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7427978515625	2	532.786776	1063.559	-0.2795	-0.00014892	-0.19036	-0.00010142	-0.46987	-0.00025034	532.7866696754664	19.878	0.28712	19.878	19.725	20.012	0					55	31	2	0	0	0	0.3576	1	1472	1472		0.79363	0	1	21444	+		25342	8545	16848	17008	33969	33969					0.02976108871530414
YLTNFFTKY	9	Unmodified	_YLTNFFTKY_					0	0	0			REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF	REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7920532226562	2	598.802957	1195.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.798	1	82.798	82.298	83.298	0								0	0	0	0.24978	1	20315	20315		9.3831	1.473	1		+		25343	9412	16849	17009	33970	33970					0.00138896274529543
YLTQMDDQI	9	Unmodified	_YLTQMDDQI_					0	0	0			REV__SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	REV__SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.3067016601562	2	563.757889	1125.50123	0.39247	0.00022126	0.27237	0.00015355	0.66484	0.00037481	563.7580118336848	57.167	1.4532	57.235	56.573	58.026	0.068375					89	54	2	0	0	0	0.24635	1	12212	12212		10.824	0	1	91905	+		25344	8433	16850	17010	33971	33971					-0.05650521116217533
YLTQMDDQI	9	Unmodified	_YLTQMDDQI_					0	0	0			REV__SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	REV__SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	563.757889	1125.50123	0.31679	0.00017859	0.97442	0.00054934	1.2912	0.00072793	563.7583121544369	57.147	1.59	57.147	56.627	58.217	0	-0.044222	0.00029096	NaN	10.824	75	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148910	+		25345	8433	16850	17010							-0.05650521116217533
YLTRDDVL	8	Unmodified	_YLTRDDVL_					0	0	0		nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.7640380859375	2	497.763832	993.513111	0.48914	0.00024347	-0.075377	-3.752E-05	0.41376	0.00020595	497.76378618595584	53.678	0.68	53.678	53.451	54.131	0					53	24	3	0	0	0	0.41225	2	11438	11393;11438		24.674	0	1	916920			25346	5057	16851	17011	33972;33973	33973					0.01609463689283075
YLTRDDVL	8	Unmodified	_YLTRDDVL_					0	0	0		nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.7641906738281	2	497.763832	993.513111	0.51088	0.0002543	-0.2011	-0.0001001	0.30978	0.0001542	497.76371590046506	53.63	0.65773	53.696	53.482	54.14	0.06543					66	27	4	0	0	0	0.50159	2	11242	11242;11323		12.532	0	1	808100			25347	5057	16851	17011	33974;33975	33974					0.01609463689283075
YLTTEKNSF	9	Unmodified	_YLTTEKNSF_					0	0	0		nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2843017578125	2	551.774396	1101.53424	0.62869	0.0003469	1.2519	0.00069079	1.8806	0.0010377	551.7750912290388	93.51	0.38489	93.51	93.385	93.77	0					19	14	2	0	0	0	0.1478	1	23570	23570		34.102	34.102	1	61169			25348	4362	16852	17012	33976	33976					-0.012465710018659593
YLTTEKNSF	9	Unmodified	_YLTTEKNSF_					0	0	0		nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.2843627929688	2	551.774396	1101.53424	0.61542	0.00033957	1.1522	0.00063575	1.7676	0.00097533	552.2762729138632	93.544	0.31884	93.581	93.448	93.766	0.037369					20	12	2	0	0	0	0.18479	1	23417	23417		26.884	13.376	1	82581			25349	4362	16852	17012	33977	33977					-0.012465710018659593
YLTVWFYH	8	Unmodified	_YLTVWFYH_					0	0	0		ENST00000578748.6_1_17:27278935-27279106:+|nuORF	ENST00000578748.6_1_17:27278935-27279106:+|nuORF	ENST00000578748.6_1_17:27278935-27279106:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.3054809570312	2	564.779285	1127.54402	0.67655	0.0003821	-0.74889	-0.00042296	-0.072342	-4.0857E-05	564.7789143474561	65.888	0.31548	65.888	65.761	66.077	0					14	10	2	0	0	0	0.34775	1	15214	15214		20.871	3.7847	1	119720			25350	7209	16853	17013	33978	33978					-0.014653382058213538
YLTYVAKIL	9	Unmodified	_YLTYVAKIL_					0	0	0			REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.325927734375	2	542.326068	1082.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.749	1	99.749	99.249	100.25	0								0	0	0	0.19239	1	25468	25468		19.257	8.4331	1		+		25351	9257	16854	17014	33979	33979					0.09956961176612822
YLVAAALLVGF	11	Unmodified	_YLVAAALLVGF_					0	0	0		DDRGK1-RAC1|1|fusion;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	DDRGK1-RAC1|1|fusion	DDRGK1-RAC1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.8289184570312	2	568.839342	1135.66413	0.3662	0.00020831	-0.076367	-4.344E-05	0.28983	0.00016487	568.8392417872859	74.639	1.1056	74.687	74.396	75.502	0.048546					93	39	4	0	0	0	0.31901	1	17620	17620		15.847	0	1	1426400			25352	267	16855	17015	33980	33980					0.10172650067943323
YLVCESELIE	10	Unmodified	_YLVCESELIE_					0	0	0			REV__ENSG00000259571|ENST00000560104|BLID	REV__ENSG00000259571|ENST00000560104|BLID	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2857055664062	2	599.289022	1196.56349	0.4962	0.00029737	-3.1995	-0.0019174	-2.7033	-0.0016201	599.2871017099715	82.623	0.33807	82.623	82.454	82.792	0					17	11	2	0	0	0	0.28643	1	20294	20294		24.021	1.2843	1	132180	+		25353	11108	16856	17016	33981	33981					-0.026927947678814235
YLVCNYSPK	9	Unmodified	_YLVCNYSPK_					0	0	0		ENSG00000121005|ENST00000262207|CRISPLD1	ENSG00000121005|ENST00000262207|CRISPLD1	ENSG00000121005|ENST00000262207|CRISPLD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.7661743164062	2	543.76806	1085.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.339	1	34.339	33.839	34.839	0								0	0	0	0.28807	1	5587	5587		1.4819	0	1				25354	2140	16857	17017	33982	33982					-0.017773056657460984
YLVDCEKKL	9	Unmodified	_YLVDCEKKL_					0	0	0		ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.796875	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.398	1	43.398	42.898	43.898	0								0	0	0	0.22786	1	8319	8319		13.906	0	1				25355	2543	16858	17018	33983	33983					0.028675365398157737
YLVGQKNREE	10	Unmodified	_YLVGQKNREE_					0	0	0			REV__ENST00000406027.2_1_2:216946696-216946852:+|nuORF	REV__ENST00000406027.2_1_2:216946696-216946852:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.34228515625	2	618.322576	1234.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.33	1	76.369	75.869	76.869	0.03923								0	0	0	0.33395	1	18185	18185		7.2892	0	1		+		25356	11763	16859	17019	33984	33984					0.022669965581144425
YLVGSHMAEF	10	Unmodified	_YLVGSHMAEF_					0	0	0		ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.7554931640625	2	577.270967	1152.52738	0.62547	0.00036106	2.1918	0.0012653	2.8173	0.0016264	577.2710696028744	54.652	0.71734	54.652	54.322	55.04	0					56	31	3	0	0	0	0.31585	1	11755	11755		10.824	1.4765	1	130710			25357	2495	16860	17020	33985	33985					-0.04278207154084157
YLVHAGTSTL	10	Unmodified	_YLVHAGTSTL_					0	0	0			REV__tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	REV__tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.73291015625	2	531.284931	1060.55531	0.20977	0.00011145	-0.31608	-0.00016793	-0.10631	-5.648E-05	531.2846156449503	50.526	0.4113	50.526	50.32	50.731	0					20	14	2	0	0	0	0.31616	1	10504	10504		10.074	0	1	57788	+		25358	13159	16861	17021	33986	33986					0.027454390976799914
YLVKREDYL	9	Unmodified	_YLVKREDYL_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.749267578125	2	599.826963	1197.63937	0.50126	0.00030067	1.0196	0.00061159	1.5209	0.00091226	600.329188548254	79.388	0.43191	79.388	79.13	79.562	0					25	13	3	0	0	0	0.24749	1	19245	19245		9.3474	2.0582	1	138780			25359	3458	16862	17022	33987	33987					0.0484597019458306
YLVLERYLW	9	Unmodified	_YLVLERYLW_					0	0	0		ENSG00000147262|ENST00000682440|GPR119	ENSG00000147262|ENST00000682440|GPR119	ENSG00000147262|ENST00000682440|GPR119	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8482666015625	2	627.847699	1253.68084	0.08891	5.5822E-05	0.78461	0.00049261	0.87352	0.00054844	628.3496505689498	78.805	0.50566	78.805	78.651	79.157	0					37	17	3	0	0	0	0.16392	1	19145	19145		22.736	2.2827	1	231660			25360	3322	16863	17023	33988	33988					0.06415150953898774
YLVLFALFD	9	Unmodified	_YLVLFALFD_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7661743164062	2	550.804968	1099.59538	0.14919	8.2174E-05	0.73383	0.0004042	0.88302	0.00048637	550.8054313502416	90.291	0.41086	90.325	90.216	90.627	0.034065					26	16	2	0	0	0	0.2446	1	22416	22416		11.64	0	1	75514	+		25361	7727	16864	17024	33989	33989					0.04956985768239974
YLVMDEADR	9	Unmodified	_YLVMDEADR_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.2942504882812	2	556.258056	1110.50156	0.18331	0.00010197	-0.059226	-3.2945E-05	0.12409	6.9025E-05	556.2581635156774	43.196	0.36241	43.286	43.064	43.426	0.089764					13	12	2	0	0	0	0.25416	1	8127	8127		5.2307	0.90143	1	35139			25362	5557	16865	17025	33990	33990					-0.0492710139637893
YLVNFKNVF	9	Unmodified	_YLVNFKNVF_					0	0	0			REV__ENSG00000168090|ENST00000303904|COPS6	REV__ENSG00000168090|ENST00000303904|COPS6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3265991210938	2	572.313492	1142.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.046	1	73.098	72.598	73.598	0.052574								0	0	0	0.24995	1	17181	17181		9.3474	0	1		+		25363	10144	16866	17026	33991	33991					0.04682906374023332
YLVTCFQAGSL	11	Unmodified	_YLVTCFQAGSL_					0	0	0		ENST00000303045.10_2_8:139926021-139926222:-|nuORF	ENST00000303045.10_2_8:139926021-139926222:-|nuORF	ENST00000303045.10_2_8:139926021-139926222:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.8388061523438	2	601.299724	1200.5849	0.57628	0.00034652	2.4894	0.0014969	3.0657	0.0018434	601.3007026229113	69.014	0.33043	69.014	68.802	69.132	0					17	12	2	0	0	0	0.31032	1	16090	16090		7.609	0.88579	1	107670			25364	5979	16867	17027	33992	33992					-0.007373649484861744
YLVWLQAGW	9	Unmodified	_YLVWLQAGW_					0	0	0			REV__ENST00000542466.2_1_12:58120098-58120972:+|nuORF	REV__ENST00000542466.2_1_12:58120098-58120972:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3005981445312	2	568.300384	1134.58622	0.072748	4.1343E-05	0.81408	0.00046264	0.88683	0.00050398	568.3004483767963	73.693	0.49139	73.693	73.515	74.006	0					45	16	5	0	0	0	0.083504	1	17534	17534		36.044	11.37	1	257440	+		25365	12405	16868	17028	33993	33993					0.02430637202564867
YLVWLQAGW	9	Unmodified	_YLVWLQAGW_					0	0	0			REV__ENST00000542466.2_1_12:58120098-58120972:+|nuORF	REV__ENST00000542466.2_1_12:58120098-58120972:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8023681640625	2	568.300384	1134.58622	0.29716	0.00016887	0.18133	0.00010305	0.47849	0.00027192	568.3002478877481	73.631	0.55089	73.683	73.441	73.992	0.052574					42	17	3	0	0	0	0.083504	1	17363	17363		36.044	3.9272	1	333320	+		25366	12405	16868	17028	33994	33994					0.02430637202564867
YLVWLQAGW	9	Unmodified	_YLVWLQAGW_					0	0	0			REV__ENST00000542466.2_1_12:58120098-58120972:+|nuORF	REV__ENST00000542466.2_1_12:58120098-58120972:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8460083007812	2	568.300384	1134.58622	0.29716	0.00016887	0.18133	0.00010305	0.47849	0.00027192	568.3002478877481	73.631	0.55089	73.683	73.441	73.992	0.052574					42	17	3	0	0	0	0.20845	1	17328	17328		21.747	10.106	1	333320	+		25367	12405	16868	17028	33995	33995					0.02430637202564867
YLWALDLGDF	10	Unmodified	_YLWALDLGDF_					0	0	0			REV__ENSG00000133048|ENST00000255409|CHI3L1	REV__ENSG00000133048|ENST00000255409|CHI3L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.80224609375	2	606.800414	1211.58628	0.94476	0.00057328	0.38835	0.00023565	1.3331	0.00080893	606.8006275355549	81.948	1.9965	81.948	81.145	83.141	0					127	69	3	0	0	0	0.40987	1	20194	20194		10.824	0	1	279320	+		25368	9137	16869	17029	33996	33996					-0.011054075881020253
YLWAVIGVVI	10	Unmodified	_YLWAVIGVVI_					0	0	0			REV__SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	REV__SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.297607421875	2	566.841885	1131.66922	0.20933	0.00011866	-0.27624	-0.00015658	-0.066908	-3.7926E-05	567.3434373194242	78.37	0.36046	78.37	78.238	78.599	0					22	11	3	0	0	0	0.31512	1	18952	18952		12.532	3.1841	1	98660	+		25369	10943	16870	17030	33997	33997					0.1086495393055884
YLWEDEIE	8	Unmodified	_YLWEDEIE_					0	0	0			REV__ENST00000557188.1_1_14:36840618-36841095:+|nuORF	REV__ENST00000557188.1_1_14:36840618-36841095:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.2976684570312	2	548.745305	1095.47606	0.47194	0.00025898	3.6153	0.0019839	4.0873	0.0022429	548.7472962399868	77.047	0.47383	77.081	76.729	77.203	0.034485					26	16	2	0	0	0	0.35713	1	18379	18379		14.582	0	1	137170	+		25370	10739	16871	17031	33998	33998					-0.06786252647157198
YLWMERQKS	9	Unmodified	_YLWMERQKS_					0	0	0		KCNT2|p.A501Cfs*2|1|0.37|ENSG00000162687|chr1:196342131-196342132|-/A|frameshift_variant;ENST00000498426.5_1_1:196286396-196434478:-|nuORF;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2;nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	KCNT2|p.A501Cfs*2|1|0.37|ENSG00000162687|chr1:196342131-196342132|-/A|frameshift_variant	KCNT2|p.A501Cfs*2|1|0.37|ENSG00000162687|chr1:196342131-196342132|-/A|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.8103637695312	2	620.81079	1239.60703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.306	1	97.347	96.847	97.847	0.040855								0	0	0	0.27427	1	24573	24573		4.3292	0.38484	1				25371	1545	16872	17032	33999	33999					-0.003191404800872988
YLWRLDLSH	9	Unmodified	_YLWRLDLSH_					0	0	0		ENST00000489895.5_1_3:52512001-52514911:+|nuORF	ENST00000489895.5_1_3:52512001-52514911:+|nuORF	ENST00000489895.5_1_3:52512001-52514911:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8198852539062	2	601.819473	1201.62439	0.020609	1.2403E-05	0.50241	0.00030236	0.52302	0.00031476	601.8197455375374	28.537	0.40079	28.619	28.471	28.872	0.082132					47	21	3	0	0	0	0.34704	1	3718	3718		0.52476	0	1	35786			25372	6800	16873	17033	34000	34000					0.03164523117220597
YLWYGKVGWL	10	Unmodified	_YLWYGKVGWL_					0	0	0		ENST00000548843.1_1_12:58200052-58208006:-|nuORF	ENST00000548843.1_1_12:58200052-58208006:-|nuORF	ENST00000548843.1_1_12:58200052-58208006:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.842529296875	2	642.842416	1283.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.161	1	41.25	40.75	41.75	0.089645								0	0	0	0.33979	1	7515	7515		0.45834	0	1				25373	7089	16874	17034	34001	34001					0.039791682994746225
YLWYLPDE	8	Unmodified	_YLWYLPDE_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7598266601562	2	549.760758	1097.50696	0.12945	7.1169E-05	-0.86751	-0.00047692	-0.73805	-0.00040575	549.7602049829571	33.744	0.62592	33.818	33.593	34.219	0.074322					56	26	3	0	0	0	0.53817	1	5371	5371		2.5775	0	1	141880			25374	3202	16875	17035	34002	34002					-0.0378905454224423
YLYFAILL	8	Unmodified	_YLYFAILL_					0	0	0		ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.74261474609375	2	508.296779	1014.57901	0.12917	6.5658E-05	-3.22	-0.0016367	-3.0908	-0.0015711	508.2950023097624	87.062	0.20288	87.062	87.008	87.211	0					11	8	2	0	0	0	0.35759	1	21648	21648		11.114	0	1	80717			25375	2020	16876	17036	34003	34003					0.07229904602138504
YLYFLTAL	8	Unmodified	_YLYFLTAL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.7626953125	2	502.278586	1002.54262	0.50365	0.00025297	-0.74913	-0.00037627	-0.24548	-0.0001233	502.278075938346	70.32	0.59331	70.32	70.114	70.708	0					35	21	2	0	0	0	0.35759	1	16477	16477		13.508	0	1	200370			25376	3265	16877	17037	34004	34004					0.04145027705408211
YLYFLTAL	8	Unmodified	_YLYFLTAL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	502.278586	1002.54262	0.47096	0.00023655	-0.83377	-0.00041879	-0.36281	-0.00018223	502.2779445763332	70.315	0.60503	70.376	70.065	70.67	0.060562	0.027957	-4.8993E-05	NaN	13.508	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234950			25377	3265	16877	17037							0.04145027705408211
YLYGYPVF	8	Unmodified	_YLYGYPVF_					0	0	0			REV__nc|ENSG00000196371|P22083-2|FUT4	REV__nc|ENSG00000196371|P22083-2|FUT4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2550964355469	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.107	1	71.165	70.665	71.665	0.058578								0	0	0	0.38822	1	16589	16589		6.3541	1.1234	1		+		25378	10813	16878	17038	34005	34005					-0.013758318457121277
YLYKLHPPTP	10	Unmodified	_YLYKLHPPTP_					0	0	0			REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF	REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.2644653320312	2	614.839874	1227.66519	0.32116	0.00019746	-0.51332	-0.00031561	-0.19215	-0.00011814	614.8393925547922	84.228	0.16348	84.228	84.079	84.242	0					9	5	2	0	0	0	0.31691	1	20712	20712		7.2892	3.6927	1	116050	+		25379	10729	16879	17039	34006	34006					0.06046864436848409
YLYKLHPPTP	10	Unmodified	_YLYKLHPPTP_					0	0	0			REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF	REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.839874	1227.66519	0.068592	4.2173E-05	-0.16457	-0.00010118	-0.095975	-5.9009E-05	614.8395761899799	84.176	0.20617	84.197	84.089	84.295	0.021744	-0.015161	0.00021006	NaN	7.2892	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74421	+		25380	10729	16879	17039							0.06046864436848409
YLYLFALV	8	Unmodified	_YLYLFALV_					0	0	0			REV__ENST00000537237.5_1_12:110017641-110029070:+|nuORF	REV__ENST00000537237.5_1_12:110017641-110029070:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	501.8153076171875	2	501.288954	1000.56336	0.47662	0.00023892	2.1536	0.0010796	2.6303	0.0013185	501.28992508508713	93.87	0.28257	93.87	93.658	93.941	0					17	11	2	0	0	0	0.53257	1	23658	23658		6.3541	0	1	119140	+		25381	8676	16880	17040	34007	34007					0.06309618085083457
YLYLKELNR	9	Unmodified	_YLYLKELNR_					0	0	0			REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.3458862304688	2	606.342781	1210.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.36	1	103.36	102.86	103.86	0								0	0	0	0.28409	1	26565	26565		2.3027	0.24298	1		+		25382	9100	16881	17041	34008	34008					0.07409962948509019
YLYLNVGIF	9	Unmodified	_YLYLNVGIF_					0	0	0		chr8:129752820-129754552|279|12.69|0.25|5.67|-|2|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|56	chr8:129752820-129754552|279|12.69|0.25|5.67|-|2|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|56	chr8:129752820-129754552|279|12.69|0.25|5.67|-|2|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|56	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2682495117188	2	551.302593	1100.59063	0.48518	0.00026748	-0.48691	-0.00026843	-0.0017257	-9.514E-07	551.3023565069353	79.228	0.26871	79.228	79.074	79.342	0					12	8	2	0	0	0	0.2491	1	19233	19233		8.5933	0	1	45549			25383	184	16882	17042	34009	34009					0.04436101625447009
YLYYLPFL	8	Unmodified	_YLYYLPFL_					0	0	0			REV__ENSG00000104804|ENST00000221399|TULP2	REV__ENSG00000104804|ENST00000221399|TULP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.783447265625	2	546.294236	1090.57392	0.35886	0.00019604	-2.9375	-0.0016047	-2.5786	-0.0014087	546.2926852305523	94.807	0.43253	94.807	94.566	94.998	0					27	16	2	0	0	0	0.46808	1	23927	23927		17.087	0	1	75065	+		25384	8512	16883	17043	34010	34010					0.032256007395062625
YLYYTAVA	8	Unmodified	_YLYYTAVA_					0	0	0			REV__ENST00000539215.5_1_12:133249167-133250211:-|nuORF	REV__ENST00000539215.5_1_12:133249167-133250211:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.2447204589844	2	482.244744	962.474934	-0.28482	-0.00013735	-0.08404	-4.0528E-05	-0.36886	-0.00017788	482.24467871767814	43.453	0.46892	43.542	43.298	43.767	0.088924					27	16	2	0	0	0	0.54081	1	8265	8265		0.79363	0	1	65220	+		25385	10423	16884	17044	34011	34011					-0.007804222253980697
YMAFNQPSF	9	Unmodified	_YMAFNQPSF_					0	0	0			REV__tr|U7STK6|U7STK6_FUSNUArabinose-5-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01093PE=3SV=1	REV__tr|U7STK6|U7STK6_FUSNUArabinose-5-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01093PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.3345947265625	2	552.744585	1103.47462	0.51749	0.00028604	-1.3772	-0.00076122	-0.85967	-0.00047518	553.2466578999326	73.667	0.26027	73.72	73.591	73.852	0.052567					17	9	3	0	0	0	0.25174	1	17382	17382		7.2892	2.0586	1	55589	+		25386	13176	16885	17045	34012	34012					-0.07298165216889174
YMCLHEKEF	9	Unmodified	_YMCLHEKEF_					0	0	0			REV__HAUS6|p.W15C|1|0.15|ENSG00000147874|chr9:19102607-19102607|C/A|missense_variant	REV__HAUS6|p.W15C|1|0.15|ENSG00000147874|chr9:19102607-19102607|C/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.2664794921875	2	600.264827	1198.5151	0.55829	0.00033512	1.3499	0.00081027	1.9081	0.0011454	600.2654096422763	67.955	0.48473	68.018	67.874	68.359	0.063507					41	17	3	0	0	0	0.18364	2	15658	15641;15658		20.454	5.0233	1	340140	+		25387	12663	16886	17046	34013;34014	34014					-0.07621566888769848
YMCLHEKEF	9	Unmodified	_YMCLHEKEF_					0	0	0			REV__HAUS6|p.W15C|1|0.15|ENSG00000147874|chr9:19102607-19102607|C/A|missense_variant	REV__HAUS6|p.W15C|1|0.15|ENSG00000147874|chr9:19102607-19102607|C/A|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	600.264827	1198.5151	0.43018	0.00025822	1.6004	0.00096068	2.0306	0.0012189	600.2654105502386	68.036	0.4665	68.036	67.857	68.324	0	0.0088819	0.00013575	NaN	20.454	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198270	+		25388	12663	16886	17046							-0.07621566888769848
YMEEVPLAL	9	Unmodified	_YMEEVPLAL_					0	0	0		ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7709350585938	2	532.770268	1063.52598	0.60169	0.00032056	0.15899	8.4707E-05	0.76068	0.00040527	532.7702076773317	92.542	1.2426	92.542	91.763	93.006	0					111	46	3	0	0	0	0.29576	1	23300	23300		7.2892	0	1	159930			25389	2266	16887	17047	34015	34015					-0.0032384124283453275
YMELKHVLA	9	Unmodified	_YMELKHVLA_					0	0	0		ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7705078125	2	552.299527	1102.5845	0.23178	0.00012801	2.2392	0.0012367	2.4709	0.0013647	552.3003975905425	21.642	0.14251	21.744	21.676	21.819	0.10178					19	14	2	0	0	0	0.25989	1	1800	1800		0.52476	0	1	11960			25390	2105	16888	17048	34016	34016					0.037312601223220554
YMENMEQVFE	10	Unmodified	_YMENMEQVFE_					0	0	0		nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2;ENSG00000124507|ENST00000244458|PACSIN1	nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000124507|ENST00000244458|PACSIN1	ENSG00000124507|ENST00000244458|PACSIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	440.513916015625	3	440.514268	1318.52097	-0.12629	-5.5634E-05	-0.90871	-0.0004003	-1.035	-0.00045593	440.51382992364256	43.935	0.48881	44.024	43.846	44.335	0.088924					30	16	3	0	0	0	0.47119	1	8342	8342		0.77653	0	1	85953			25391	1175;2257	16889	17049	34017	34017					-0.12554513167788173
YMENMEQVFE	10	Unmodified	_YMENMEQVFE_					0	0	0		nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2;ENSG00000124507|ENST00000244458|PACSIN1	nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000124507|ENST00000244458|PACSIN1	ENSG00000124507|ENST00000244458|PACSIN1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	440.514268	1318.52097	0.0026629	1.173E-06	-1.29	-0.00056826	-1.2873	-0.00056709	440.5136371153329	44.035	0.4386	44.035	43.859	44.298	0	0.0054757	-0.00040228	NaN	0.77653	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59060			25392	1175;2257	16889	17049							-0.12554513167788173
YMGLCECMCV	10	Unmodified	_YMGLCECMCV_					0	0	0		ENST00000306052.10_1_1:53712440-53712632:-|nuORF	ENST00000306052.10_1_1:53712440-53712632:-|nuORF	ENST00000306052.10_1_1:53712440-53712632:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.7734985351562	2	576.206752	1150.39895	0.20289	0.00011691	-2.4009	-0.0013834	-2.198	-0.0012665	576.2053559800369	59.089	0.69072	59.159	59.02	59.71	0.070477					53	27	3	0	0	0	0.31783	1	12967	12967		3.9444	1.6417	1	311510			25393	5984	16890	17050	34018	34018					-0.17023293047009247
YMIQEEEW	8	Unmodified	_YMIQEEEW_					0	0	0		nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.23974609375	2	564.239332	1126.46411	-0.042789	-2.4143E-05	0.26404	0.00014898	0.22125	0.00012484	564.2392778937628	72.49	0.69844	72.49	72.019	72.718	0					37	23	2	0	0	0	0.43379	1	17157	17157		21.747	5.8995	1	128250			25394	864	16891	17051	34019	34019					-0.0940619266198155
YMLVPIEKKFF	11	Unmodified	_YMLVPIEKKFF_					0	0	0			REV__tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	REV__tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2763977050781	3	472.264953	1413.77303	0.30284	0.00014302	-2.2615	-0.001068	-1.9586	-0.00092499	472.598057744775	69.876	0.39487	69.876	69.672	70.067	0					25	13	3	0	0	0	0.38613	1	16374	16374		7.4771	0.43998	1	126630	+		25395	13124	16892	17052	34020	34020					0.08269492975864523
YMLVPIEKKFF	11	Unmodified	_YMLVPIEKKFF_					0	0	0			REV__tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	REV__tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	472.264953	1413.77303	0.30284	0.00014302	-2.2615	-0.001068	-1.9586	-0.00092499	472.598057744775	69.876	0.39487	69.876	69.672	70.067	0	0.03263	0.00020855	NaN	7.4771	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126630	+		25396	13124	16892	17052							0.08269492975864523
YMLVPIEKKFF	11	Unmodified	_YMLVPIEKKFF_					0	0	0			REV__tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	REV__tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	472.264953	1413.77303	0.062512	2.9522E-05	-2.5284	-0.0011941	-2.4659	-0.0011646	472.263880594701	69.75	0.39203	69.811	69.641	70.033	0.060562	-0.03263	-0.00016967	NaN	7.4771	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67685	+		25397	13124	16892	17052							0.08269492975864523
YMMVMDHHF	9	Unmodified	_YMMVMDHHF_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1674499511719	3	404.166257	1209.47694	0.41021	0.00016579	1.8398	0.0007436	2.25	0.00090939	404.5013076645074	46.632	0.20632	46.632	46.607	46.813	0					18	12	2	0	0	0	0.31086	1	9340	9340		5.2969	0	1	176080			25398	4070	16893	17053	34021	34021					-0.11941776075082089
YMPALARFR	9	Unmodified	_YMPALARFR_					0	0	0			REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant	REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.80712890625	2	562.805311	1123.59607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.942	1	19.942	19.442	20.442	0								0	0	0	0.29233	1	1475	1475		0.6015	0.14316	1		+		25399	8949	16894	17054	34022	34022					0.039215019362927706
YMPALARFR	9	Unmodified	_YMPALARFR_					0	0	0			REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant	REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8076782226562	2	562.805311	1123.59607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.299	1	20.299	19.799	20.799	0								0	0	0	0.29233	1	1573	1573		0.6015	0.20078	1		+		25400	8949	16894	17054	34023	34023					0.039215019362927706
YMPALARFR	9	Unmodified	_YMPALARFR_					0	0	0			REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant	REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.25341796875	2	562.805311	1123.59607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.226	1	19.321	18.821	19.821	0.095232								0	0	0	0.29233	1	1226	1226		0.6015	0.076735	1		+		25401	8949	16894	17054	34024	34024					0.039215019362927706
YMPMAMVV	8	Unmodified	_YMPMAMVV_					0	0	0			REV__ENSG00000189337|ENST00000376030|KAZN	REV__ENSG00000189337|ENST00000376030|KAZN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	471.2180480957031	2	471.218303	940.422053	0.30457	0.00014352	-1.1647	-0.00054884	-0.86016	-0.00040532	471.21767773109616	63.557	0.57872	63.557	63.317	63.896	0					30	19	2	0	0	0	0.53257	1	14483	14483		6.3541	1.1234	1	284450	+		25402	10793	16895	17055	34025	34025					-0.05054162875694601
YMPYWMIYG	9	Unmodified	_YMPYWMIYG_					0	0	0		nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1	nc|ENSG00000083067|Q9HCF6-10|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5149230957031	3	408.513651	1222.51912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.886	1	75.886	75.386	76.386	0								0	0	0	0.28409	1	18204	18204		1.1933	0	1				25403	927	16896	17056	34026	34026					-0.08323477395060763
YMQIINFFK	9	Unmodified	_YMQIINFFK_					0	0	0		ENSG00000146857|ENST00000662584|STRA8;nc|ENSG00000146857|Q7Z7C7|STRA8	ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	401.87799072265625	3	401.87921	1202.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.032	1	28.114	27.614	28.614	0.082134								0	0	0	0.29233	1	3592	3592		0.26902	0	1				25404	3302	16897	17057	34027	34027					0.02259833156381319
YMRLKEEL	8	Unmodified	_YMRLKEEL_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7849731445312	2	541.289159	1080.56377	0.61611	0.00033349	-1.5416	-0.00083447	-0.92552	-0.00050098	541.2894484799848	54.086	0.41868	54.152	53.866	54.285	0.065128					25	15	2	0	0	0	0.49148	1	11370	11370		13.906	0	1	79329			25405	1327	16898	17058	34028	34028					0.026706697426334358
YMRWKMEQW	9	Unmodified	_YMRWKMEQW_					0	0	0		ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.2095031738281	3	453.210854	1356.61073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.597	1	88.629	88.129	89.129	0.032257								0	0	0	0.28946	1	21916	21916		1.1933	0.49568	1				25406	5196	16899	17059	34029	34029					-0.0533079397785059
YMSNHNMDQA	10	Unmodified	_YMSNHNMDQA_					0	0	0			REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1489562988281	3	404.158707	1209.45429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.298	1	24.398	23.898	24.898	0.099739								0	0	0	0.34005	1	2520	2520		0.15932	0	1		+		25407	12878	16900	17060	34030	34030					-0.1420570393900107
YMSNHNMDQA	10	Unmodified	_YMSNHNMDQA_					0	0	0			REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.1488952636719	3	404.158707	1209.45429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.387	1	25.483	24.983	25.983	0.096073								0	0	0	0.34005	1	2830	2830		0.15932	0	1		+		25408	12878	16900	17060	34031	34031					-0.1420570393900107
YMTKCLEIF	9	Unmodified	_YMTKCLEIF_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7550659179688	2	574.279946	1146.54534	0.16915	9.7138E-05	-0.32614	-0.0001873	-0.15699	-9.0159E-05	574.2795352807103	89.526	0.40614	89.558	89.414	89.82	0.032257					26	15	2	0	0	0	0.25051	1	22233	22233		7.9102	0	1	142150	+		25409	8640	16901	17061	34032	34032					-0.022072082236036294
YMTKCLEIF	9	Unmodified	_YMTKCLEIF_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	574.279946	1146.54534	0.13366	7.6758E-05	-1.208	-0.00069374	-1.0744	-0.00061698	574.2790042506258	89.639	0.49344	89.639	89.39	89.883	0	0.040372	-0.00034603	NaN	7.9102	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177080	+		25410	8640	16901	17061							-0.022072082236036294
YMTWDPAL	8	Unmodified	_YMTWDPAL_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.771728515625	2	498.728403	995.442254	0.24768	0.00012352	2.803	0.0013979	3.0507	0.0015215	498.7299329208089	49.07	0.33735	49.07	48.945	49.283	0					19	11	2	0	0	0	0.35042	1	10024	10024		19.439	2.4967	1	31304			25411	2961	16902	17062	34033	34033					-0.05564952619897667
YMVGIVIY	8	Unmodified	_YMVGIVIY_					0	0	0			REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.259033203125	2	479.259339	956.504126	-0.65054	-0.00031178	-0.39966	-0.00019154	-1.0502	-0.00050332	479.2591180119593	14.782	0.14079	14.782	14.708	14.849	0					26	17	2	0	0	0	0.54081	1	431	431		0.79363	0	1	12036	+		25412	9934	16903	17063	34034	34034					0.02413398799251354
YMVGIVIY	8	Unmodified	_YMVGIVIY_					0	0	0			REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.2437744140625	2	479.259339	956.504126	-0.51406	-0.00024637	-0.25152	-0.00012054	-0.76558	-0.00036691	479.25914221106905	22.939	0.77434	22.939	22.715	23.49	0					138	73	3	0	0	0	0.54081	1	2223	2223		0.79363	0	1	115830	+		25413	9934	16903	17063	34035	34035					0.02413398799251354
YMVPLFEDV	9	Unmodified	_YMVPLFEDV_					0	0	0			REV__ENST00000486375.1_1_1:183899365-183909857:-|nuORF	REV__ENST00000486375.1_1_1:183899365-183909857:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7703247070312	2	556.770268	1111.52598	-0.18662	-0.0001039	-0.030562	-1.7016E-05	-0.21718	-0.00012092	556.7701810970314	19.175	0.61939	19.175	19.025	19.644	0					150	71	4	0	0	0	0.34646	1	1269	1269		0.6015	0	1	92192	+		25414	10911	16904	17064	34036	34036					-0.025318412428305237
YNAALTYMPSV	11	Unmodified	_YNAALTYMPSV_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.293701171875	2	615.297181	1228.57981	-0.11849	-7.2908E-05	-3.5393	-0.0021777	-3.6578	-0.0022507	615.294702467388	102.03	0.27988	102.03	101.95	102.23	0					23	18	2	0	0	0	0.40578	1	26189	26189		2.9952	0	1	86438			25415	2189	16905	17065	34037	34037					-0.025336688111337935
YNAALTYMPSV	11	Unmodified	_YNAALTYMPSV_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	615.2940673828125	2	615.297181	1228.57981	-0.14981	-9.2179E-05	-2.9806	-0.0018339	-3.1304	-0.0019261	615.2950994667331	102.25	0.28945	102.25	102.16	102.45	0					43	22	3	0	0	0	0.40578	1	26258	26258		2.9952	0	1	112810			25416	2189	16905	17065	34038	34038					-0.025336688111337935
YNALIGLVVRE	11	Unmodified	_YNALIGLVVRE_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.5778503417969	3	416.243317	1245.70812	0.21467	8.9355E-05	0.14058	5.8514E-05	0.35525	0.00014787	416.24327751035304	48.327	0.7939	48.407	47.901	48.694	0.080032					33	27	2	0	0	0	0.41309	1	9525	9525		1.3296	0.25818	1	47304	+		25417	9326	16906	17066	34039	34039					0.09509634494270358
YNANIMDHIAD	11	Unmodified	_YNANIMDHIAD_					0	0	0		nc|ENSG00000115155|Q9HC10-5|OTOF;ENSG00000115155|ENST00000272371|OTOF	nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-5|OTOF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.7848510742188	2	638.78497	1275.55539	0.32076	0.00020489	0.34159	0.0002182	0.66234	0.0004231	638.7850793314944	62.816	0.94843	62.816	62.124	63.073	0					73	35	3	0	0	0	0.29854	1	14008	14008		20.415	0	1	236820			25418	1880	16907	17067	34040	34040					-0.07136928964632716
YNANIMDHIAD	11	Unmodified	_YNANIMDHIAD_					0	0	0		nc|ENSG00000115155|Q9HC10-5|OTOF;ENSG00000115155|ENST00000272371|OTOF	nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-5|OTOF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	638.2776489257812	2	638.78497	1275.55539	0.29721	0.00018985	0.23107	0.00014761	0.52828	0.00033746	638.7845862139181	62.452	1.1115	62.524	62.01	63.122	0.072697					82	40	3	0	0	0	0.30991	1	13812	13812		10.8	0	1	192070			25419	1880	16907	17067	34041	34041					-0.07136928964632716
YNASGSEHCYD	11	Unmodified	_YNASGSEHCYD_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.7276000976562	2	623.227484	1244.44042	0.5818	0.00036259	-2.7885	-0.0017379	-2.2067	-0.0013753	623.225772896643	67.251	0.31549	67.316	67.124	67.439	0.065071					15	10	2	0	0	0	0.40578	1	15451	15451		2.9952	0.93549	1	103310			25420	4682	16908	17068	34042	34042					-0.17202658166456786
YNASGSEHCYD	11	Unmodified	_YNASGSEHCYD_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	623.227484	1244.44042	0.24656	0.00015366	-1.9244	-0.0011993	-1.6779	-0.0010457	623.2259791263807	67.307	0.3623	67.307	67.126	67.488	0	-0.0044092	0.00077341	NaN	2.9952	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65084			25421	4682	16908	17068							-0.17202658166456786
YNAYRTPTF	9	Unmodified	_YNAYRTPTF_					0	0	0		ENSG00000101940|ENST00000376729|WDR13	ENSG00000101940|ENST00000376729|WDR13	ENSG00000101940|ENST00000376729|WDR13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.787353515625	2	566.774731	1131.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.167	1	83.189	82.689	83.689	0.021744								0	0	0	0.19984	1	20266	20266		18.146	0.011366	1				25422	1281	16909	17069	34043	34043					-0.025597315621553207
YNCCCGNF	8	Unmodified	_YNCCCGNF_					0	0	0		ENSG00000186980|ENST00000334160|KRTAP23-1	ENSG00000186980|ENST00000334160|KRTAP23-1	ENSG00000186980|ENST00000334160|KRTAP23-1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	462.14654541015625	2	462.145866	922.277179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.84	1	61.84	61.34	62.34	0								0	0	0	0.38822	1	13920	13920		0.79363	0	1				25423	5103	16910	17070	34044	34044					-0.18706831022836923
YNCFQSMNTF	10	Unmodified	_YNCFQSMNTF_					0	0	0			REV__nc|ENSG00000166845|Q8IYD9|LAS2	REV__nc|ENSG00000166845|Q8IYD9|LAS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.7490234375	2	627.749541	1253.48453	0.27275	0.00017122	-0.067667	-4.2478E-05	0.20508	0.00012874	627.7493534143962	55.725	0.3919	55.725	55.497	55.889	0					21	13	2	0	0	0	0.44727	1	12066	12066		5.2969	0	1	128650	+		25424	10094	16911	17071	34045	34045					-0.13207345273826832
YNCHTEVLE	9	Unmodified	_YNCHTEVLE_					0	0	0		ENST00000467936.5_1_3:45542057-45579920:+|nuORF	ENST00000467936.5_1_3:45542057-45579920:+|nuORF	ENST00000467936.5_1_3:45542057-45579920:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7797241210938	2	554.242406	1106.47026	0.23655	0.0001311	1.4073	0.00078001	1.6439	0.00091111	554.2429756922807	90.678	0.088165	90.713	90.657	90.745	0.035446					5	3	2	0	0	0	0.2446	1	22535	22535		11.64	0.81637	1	25402			25425	6651	16912	17072	34046	34046					-0.07871674430452913
YNCNFPDDFF	10	Unmodified	_YNCNFPDDFF_					0	0	0		tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	427.834716796875	3	427.834218	1280.48082	0.672	0.0002875	0.60871	0.00026043	1.2807	0.00054793	427.83439223007775	69.176	0.97501	69.176	68.958	69.933	0					104	33	5	0	0	0	0.45773	2	16181	16138;16181		3.3196	3.3196	1	2019600			25426	13505	16913	17073	34047;34048	34048					-0.14819691776028776
YNCQEPPSSHI	11	Unmodified	_YNCQEPPSSHI_					0	0	0		nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000485450.5_1_3:49315728-49349110:-|nuORF	nc|ENSG00000114316|Q13107-2|USP4	nc|ENSG00000114316|Q13107-2|USP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.7774658203125	2	637.777145	1273.53974	0.41491	0.00026462	1.1359	0.00072445	1.5508	0.00098907	637.7767285452359	69.193	1.3402	69.193	68.958	70.298	0					120	47	4	0	0	0	0.19318	1	16182	16182		31.268	5.0002	1	1220000			25427	1835	16914	17074	34049	34049					-0.08609215481669708
YNCQHYMECC	10	Unmodified	_YNCQHYMECC_					0	0	0		nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;ENSG00000116690|ENST00000445192|PRG4	nc|ENSG00000116690|Q92954-3|PRG4	nc|ENSG00000116690|Q92954-3|PRG4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.21356201171875	3	431.810033	1292.40827	0.28033	0.00012105	3.2091	0.0013857	3.4894	0.0015068	431.8128507224579	53.489	0.077736	53.555	53.519	53.597	0.06543					5	3	2	0	0	0	0.31856	1	11249	11249		0.15932	0.01943	1	19629			25428	1968	16915	17075	34050	34050					-0.22623808437106163
YNDHVVQF	8	Unmodified	_YNDHVVQF_					0	0	0			REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.2410888671875	2	511.240524	1020.46649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.285	1	42.375	41.875	42.875	0.089764								0	0	0	0.38822	1	7855	7855		11.64	4.3511	1		+		25429	8737	16916	17076	34051	34051					-0.04291976141996656
YNDLATFF	8	Unmodified	_YNDLATFF_					0	0	0			REV__ENST00000406875.7_1_7:139250529-139250691:-|nuORF	REV__ENST00000406875.7_1_7:139250529-139250691:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.3038330078125	2	495.732	989.449448	0.38997	0.00019332	0.58781	0.0002914	0.97778	0.00048472	495.7318202351261	78.934	0.31976	78.934	78.754	79.074	0					14	10	2	0	0	0	0.3576	1	19139	19139		7.9102	0	1	61654	+		25430	11765	16917	17077	34052	34052					-0.04569896747796065
YNDWMFIAK	9	Unmodified	_YNDWMFIAK_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.2686767578125	2	594.281334	1186.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.74	1	70.74	70.24	71.24	0								0	0	0	0.23884	1	16631	16631		11.64	0	1				25431	2519	16918	17078	34053	34053					-0.03769616774411588
YNEGYREFW	9	Unmodified	_YNEGYREFW_					0	0	0			REV__tr|U7SJQ7|U7SJQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02056PE=4SV=1	REV__tr|U7SJQ7|U7SJQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02056PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.794921875	2	632.275095	1262.53564	0.32126	0.00020313	-0.41122	-0.00026001	-0.089959	-5.6879E-05	632.2741023024831	62.202	0.30968	62.275	62.087	62.396	0.073421					14	10	2	0	0	0	0.2446	1	13861	13861		11.64	4.9171	1	157270	+		25432	13068	16919	17079	34054	34054					-0.08512936913120939
YNEQLFERF	9	Unmodified	_YNEQLFERF_					0	0	0			REV__BEND2|p.L727F|1|0.78|ENSG00000177324|chrX:18171007-18171007|G/A|missense_variant	REV__BEND2|p.L727F|1|0.78|ENSG00000177324|chrX:18171007-18171007|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.2434997558594	3	415.868139	1244.58259	0.22948	9.5434E-05	2.578	0.0010721	2.8074	0.0011675	415.8694234647778	48.182	0.27006	48.262	48.087	48.357	0.080032					11	9	2	0	0	0	0.25174	1	9654	9654		7.609	2.3121	1	48903	+		25433	7738	16920	17080	34055	34055					-0.02992077361977863
YNGDFFDWP	9	Unmodified	_YNGDFFDWP_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7366333007812	2	580.737814	1159.46108	0.45208	0.00026254	-1.7526	-0.0010178	-1.3005	-0.00075527	580.7368446970473	83.705	0.32607	83.727	83.589	83.915	0.021744					16	11	2	0	0	0	0.25979	1	20431	20431		11.64	2.8949	1	103240			25434	4689	16921	17081	34056	34056					-0.11227699724486229
YNGFALILAL	10	Unmodified	_YNGFALILAL_					0	0	0			REV__ENST00000558711.1_2_15:33192152-33192383:-|nuORF	REV__ENST00000558711.1_2_15:33192152-33192383:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.81591796875	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.65	1	117.66	117.16	118.16	0.013062								0	0	0	0.33984	1	29728	29728		0.40072	0.40072	1		+		25435	11076	16922	17082	34057	34057					0.07411790516812289
YNHIRDFYD	9	Unmodified	_YNHIRDFYD_					0	0	0		tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.3341064453125	2	621.780544	1241.54654	0.28779	0.00017894	2.1965	0.0013657	2.4843	0.0015447	621.7815617230129	71.012	0.63252	71.07	70.831	71.464	0.058578					32	22	2	0	0	0	0.21622	1	16674	16674		21.537	2.175	1	258540			25436	13448	16923	17083	34058	34058					-0.06457534538822074
YNIAYGKSLKS	11	Unmodified	_YNIAYGKSLKS_					0	0	0		nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1	nc|ENSG00000164694|Q4ZHG4-2|FNDC1	nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.319580078125	2	622.337695	1242.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.874	1	84.874	84.374	85.374	0								0	0	0	0.32823	1	20946	20946		4.897	0.70751	1				25437	4027	16924	17084	34059	34059					0.0492135522326862
YNICRWFK	8	Unmodified	_YNICRWFK_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.283935546875	2	565.284211	1128.55387	0.011861	6.7046E-06	-0.94082	-0.00053183	-0.92896	-0.00052512	565.2834526412825	22.512	0.2063	22.614	22.517	22.724	0.10178					24	19	2	0	0	0	0.54097	1	2045	2045		0.69038	0	1	16760	+		25438	10667	16925	17085	34060	34060					-0.0052647347208676365
YNIEKPNI	8	Unmodified	_YNIEKPNI_					0	0	0			REV__tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1	REV__tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.7666015625	2	495.766374	989.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.726	1	64.795	64.295	65.295	0.068916								0	0	0	0.38222	1	14655	14655		24.021	8.1734	1		+		25439	13079	16926	17086	34061	34061					0.023017675519099612
YNIEQRTVPE	10	Unmodified	_YNIEQRTVPE_					0	0	0			REV__nc|ENSG00000150672|Q15700-5|DLG2	REV__nc|ENSG00000150672|Q15700-5|DLG2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.815185546875	2	624.814584	1247.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.785	1	75.785	75.285	76.285	0								0	0	0	0.33092	1	18174	18174		10.824	0	1		+		25440	9632	16927	17087	34062	34062					0.000712903212161109
YNIFTAVSCLM	11	Unmodified	_YNIFTAVSCLM_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|124|2|anti-sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|124|2|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.3021240234375	2	631.30141	1260.58827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.259	1	73.259	72.759	73.759	0								0	0	0	0.31149	1	17400	17400		10.8	2.644	1		+		25441	13027	16928	17088	34063	34063					-0.031604381661736625
YNILDQIL	8	Unmodified	_YNILDQIL_					0	0	0			REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.27691650390625	2	496.276575	990.538597	0.55522	0.00027554	-0.23948	-0.00011885	0.31574	0.00015669	496.27632013050464	65.234	0.841	65.303	65.035	65.876	0.068916					67	32	3	0	0	0	0.48462	1	14872	14872		14.838	0	1	508950	+		25442	9380	16929	17089	34064	34064					0.04294938211717181
YNIMMRCWK	9	Unmodified	_YNIMMRCWK_					0	0	0		nc|ENSG00000101336|P08631-3|HCK;nc|ENSG00000101336|P08631-2|HCK;nc|ENSG00000101336|P08631-4|HCK;ENSG00000101336|ENST00000375852|HCK	nc|ENSG00000101336|P08631-3|HCK	nc|ENSG00000101336|P08631-3|HCK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.316162109375	2	622.790489	1243.56643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.83	1	103.83	103.33	104.33	0								0	0	0	0.27427	1	26698	26698		4.3292	0	1				25443	1251	16930	17090	34065	34065					-0.04561521395703494
YNIWSIVAEF	10	Unmodified	_YNIWSIVAEF_					0	0	0			REV__ENST00000504496.5_1_5:136997591-137028142:-|nuORF	REV__ENST00000504496.5_1_5:136997591-137028142:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3173217773438	2	621.313689	1240.61282	0.059214	3.679E-05	0.038048	2.364E-05	0.097262	6.043E-05	621.3138521358136	94.227	0.48785	94.227	94.039	94.527	0					67	22	4	0	0	0	0.45627	1	23859	23859		3.5965	0	1	244300	+		25444	9532	16931	17091	34066	34066					0.0021428130321510253
YNIYIRRYV	9	Unmodified	_YNIYIRRYV_					0	0	0		ENST00000394361.8_1_16:57596005-57608989:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5	ENST00000394361.8_1_16:57596005-57608989:+|nuORF	ENST00000394361.8_1_16:57596005-57608989:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.758056640625	2	630.348397	1258.68224	-0.18153	-0.00011443	-1.1595	-0.00073091	-1.3411	-0.00084534	630.348118887446	72.387	0.26492	72.387	72.172	72.436	0					9	8	2	0	0	0	0.24263	1	17086	17086		12.532	1.7076	1	73036			25445	3735	16932	17092	34067	34067					0.06324785042647818
YNIYIRRYV	9	Unmodified	_YNIYIRRYV_					0	0	0		ENST00000394361.8_1_16:57596005-57608989:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5	ENST00000394361.8_1_16:57596005-57608989:+|nuORF	ENST00000394361.8_1_16:57596005-57608989:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	630.348397	1258.68224	0.14911	9.3989E-05	-1.0222	-0.00064436	-0.87311	-0.00055037	630.3476362197125	72.378	0.11642	72.434	72.345	72.461	0.055939	0.023357	9.86E-05	NaN	12.532	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35967			25446	3735	16932	17092							0.06324785042647818
YNKGTSLAEK	10	Unmodified	_YNKGTSLAEK_					0	0	0		nc|ENSG00000187984|Q9H560|ANKRD19P;ENST00000473204.5_1_9:95571946-95584543:+|nuORF	nc|ENSG00000187984|Q9H560|ANKRD19P	nc|ENSG00000187984|Q9H560|ANKRD19P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.7947998046875	2	555.793121	1109.57169	0.71338	0.00039649	2.8101	0.0015618	3.5235	0.0019583	555.7944954742899	54.06	0.662	54.06	53.739	54.401	0					39	23	2	0	0	0	0.38912	1	11570	11570		13.042	1.4022	1	202480			25447	6689	16933	17093	34068	34068					0.02128520263727296
YNKKKDRY	8	Unmodified	_YNKKKDRY_					0	0	0			REV__ENST00000558995.5_1_14:24543475-24546936:+|nuORF	REV__ENST00000558995.5_1_14:24543475-24546936:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.8036499023438	2	557.803823	1113.59309	0.070728	3.9452E-05	-0.10453	-5.831E-05	-0.033807	-1.8858E-05	557.8037094900166	33.37	0.65779	33.37	33.248	33.906	0					48	23	4	0	0	0	0.54081	1	5360	5360		0.79363	0.19213	1	71390	+		25448	8406	16934	17094	34069	34069					0.04083950083122545
YNKPLDPNSDD	11	Unmodified	_YNKPLDPNSDD_					0	0	0		ENSG00000163623|ENST00000295886|NKX6-1	ENSG00000163623|ENST00000295886|NKX6-1	ENSG00000163623|ENST00000295886|NKX6-1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.7906494140625	2	639.285857	1276.55716	0.2215	0.0001416	3.1718	0.0020277	3.3933	0.0021693	639.7902576121305	61.825	0.50786	61.825	61.616	62.124	0					48	23	3	0	0	0	0.38555	1	13883	13883		7.609	0.88579	1	380510			25449	3925	16935	17095	34070	34070					-0.07005596675071502
YNLARLYEAM	10	Unmodified	_YNLARLYEAM_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.29345703125	2	622.310623	1242.60669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.854	1	74.854	74.354	75.354	0								0	0	0	0.3327	1	17888	17888		8.7454	0.15213	1				25450	5393	16936	17096	34071	34071					-0.004905601999553255
YNLDCEEETE	10	Unmodified	_YNLDCEEETE_					0	0	0			REV__tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1	REV__tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3477172851562	2	622.734808	1243.45506	0.19767	0.0001231	-3.1236	-0.0019452	-2.9259	-0.0018221	622.7329750224329	87.874	0.40326	87.874	87.736	88.139	0					28	13	4	0	0	0	0.31794	1	21872	21872		3.5965	1.5367	1	191410	+		25451	13300	16937	17097	34072	34072					-0.1569263080896235
YNLDSYNIEI	10	Unmodified	_YNLDSYNIEI_					0	0	0			REV__ENSG00000256394|ENST00000537611|ASIC5	REV__ENSG00000256394|ENST00000537611|ASIC5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3158569335938	2	622.295693	1242.57683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.063	1	81.063	80.563	81.563	0								0	0	0	0.2369	1	19787	19787		25.399	10.561	1		+		25452	11097	16938	17098	34073	34073					-0.03475220664290646
YNLFSVSNHY	10	Unmodified	_YNLFSVSNHY_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000560379.1_1_15:50790733-50791282:+|nuORF;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;nc|ENSG00000138592|P40818-2|USP8	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3164672851562	2	622.290745	1242.56694	-0.38632	-0.00024041	0.59248	0.00036869	0.20615	0.00012829	622.7908365606484	107.13	0.13692	107.13	107.08	107.22	0					13	10	2	0	0	0	0.45627	1	27633	27633		3.5965	0	1	25665			25453	2914	16939	17099	34074	34074					-0.04464363878992117
YNLHKNAFP	9	Unmodified	_YNLHKNAFP_					0	0	0			REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3182983398438	2	552.285266	1102.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.742	1	61.742	61.242	62.242	0								0	0	0	0.18435	1	13890	13890		20.454	8.8133	1		+		25454	10776	16940	17100	34075	34075					0.008802785373518418
YNLKDYDKAI	10	Unmodified	_YNLKDYDKAI_					0	0	0		tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7822265625	2	621.821878	1241.6292	0.15822	9.8383E-05	-1.3559	-0.00084315	-1.1977	-0.00074477	621.8207029715047	69.284	0.74542	69.284	69.104	69.85	0					47	25	3	0	0	0	0.30896	1	16179	16179		13.042	0	1	641450			25455	13712	16941	17101	34076	34076					0.0180536246932661
YNLKDYDKAI	10	Unmodified	_YNLKDYDKAI_					0	0	0		tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.7826538085938	2	621.821878	1241.6292	-0.019911	-1.2381E-05	-1.5272	-0.00094968	-1.5472	-0.00096206	621.8208785229084	69.201	0.68877	69.263	69.168	69.857	0.062119					43	25	3	0	0	0	0.30896	1	16073	16073		18.146	1.0335	1	846490			25456	13712	16941	17101	34077	34077					0.0180536246932661
YNLLKDKI	8	Unmodified	_YNLLKDKI_					0	0	0			REV__nc|ENSG00000112874|Q9BQG2-2|NUDT12	REV__nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.3063659667969	2	503.800217	1005.58588	0.6582	0.0003316	-0.93286	-0.00046998	-0.27466	-0.00013837	503.7998484467357	66.031	0.42101	66.031	65.853	66.274	0					21	14	2	0	0	0	0.35471	1	15213	15213		18.146	0	1	196500	+		25457	8727	16942	17102	34078	34078					0.08331217482702868
YNLLKDKI	8	Unmodified	_YNLLKDKI_					0	0	0			REV__nc|ENSG00000112874|Q9BQG2-2|NUDT12	REV__nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	503.800217	1005.58588	0.51293	0.00025842	-0.43919	-0.00022127	0.073742	3.7151E-05	503.80014345883285	65.991	0.46549	66.057	65.874	66.339	0.066872	0.013281	0.00032436	NaN	18.146	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120460	+		25458	8727	16942	17102							0.08331217482702868
YNLRQRKTV	9	Unmodified	_YNLRQRKTV_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3430786132812	2	589.343646	1176.67274	0.37763	0.00022255	-0.95867	-0.00056499	-0.58104	-0.00034243	589.3428747495698	90.395	0.66033	90.395	90.048	90.708	0					59	26	3	0	0	0	0.29105	2	22573	22573;22637		7.9102	3.1541	1	300440			25459	2088	16943	17103	34079;34080	34079					0.09147016757128767
YNLRQRKTV	9	Unmodified	_YNLRQRKTV_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3430786132812	2	589.343646	1176.67274	0.22885	0.00013487	-0.85661	-0.00050484	-0.62776	-0.00036997	589.3429506648532	90.286	0.64864	90.32	90.059	90.708	0.034065					63	26	3	0	0	0	0.25209	3	22436	22387;22436;22499		12.532	5.8084	1	304200			25460	2088	16943	17103	34081;34082;34083	34082					0.09147016757128767
YNLTSELRYT	10	Unmodified	_YNLTSELRYT_					0	0	0			REV__nc|ENSG00000184432|P35606-2|COPB2	REV__nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.3147583007812	2	630.31696	1258.61937	-0.142	-8.9506E-05	-1.99	-0.0012543	-2.132	-0.0013438	630.3155431147928	72.819	0.61815	72.819	72.556	73.174	0					51	21	3	0	0	0	0.29844	1	17237	17237		22.736	0.98964	1	172650	+		25461	10635	16944	17104	34084	34084					0.00040174463947550976
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3474731445312	2	622.347009	1242.67946	0.14508	9.0291E-05	0.73274	0.00045602	0.87782	0.00054631	622.3474887027569	87.877	1.0582	87.877	87.402	88.46	0					52	38	2	0	0	0	0.45627	1	21806	21806		3.5965	1.7523	1	213460	+		25462	11403	16945	17105	34085	34085					0.06783193593491887
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3463745117188	2	622.347009	1242.67946	0.027288	1.6982E-05	0.15716	9.7811E-05	0.18445	0.00011479	622.3471397428062	88.65	0.49566	88.65	88.46	88.956	0					33	20	2	0	0	0	0.45627	3	22069	22069;22119;22131		3.5965	1.7523	1	87668	+		25463	11403	16945	17105	34086;34087;34088	34086					0.06783193593491887
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3168334960938	2	622.347009	1242.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.048	1	87.048	86.548	87.548	0								0	0	0	0.33711	1	21610	21610		3.5965	0	1		+		25464	11403	16945	17105	34089	34089					0.06783193593491887
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.3479614257812	2	622.347009	1242.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.084	1	87.084	86.584	87.584	0								0	0	0	0.33711	1	21621	21621		3.5965	0	1		+		25465	11403	16945	17105	34090	34090					0.06783193593491887
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.346435546875	2	622.347009	1242.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.247	1	87.247	86.747	87.747	0								0	0	0	0.33711	1	21671	21671		3.5965	0	1		+		25466	11403	16945	17105	34091	34091					0.06783193593491887
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3468627929688	2	622.347009	1242.67946	0.095054	5.9156E-05	0.76618	0.00047683	0.86124	0.00053599	622.3473112285109	87.977	1.0096	88.007	87.402	88.411	0.030037					77	36	3	0	0	0	0.44246	3	21761	21595;21649;21761		6.2058	2.2614	1	232650	+		25467	11403	16945	17105	34092;34093;34094	34094					0.06783193593491887
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3474731445312	2	622.347009	1242.67946	0.15475	9.6306E-05	0.36417	0.00022664	0.51892	0.00032295	622.3471001827527	88.524	0.56339	88.554	88.411	88.975	0.030037					39	23	2	0	0	0	0.45627	1	21876	21876		3.5965	0.8613	1	89356	+		25468	11403	16945	17105	34095	34095					0.06783193593491887
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3472900390625	2	622.347009	1242.67946	-0.050456	-3.1401E-05	0.91922	0.00057207	0.86876	0.00054067	622.3473921778954	89.889	2.3544	89.923	88.979	91.333	0.034058					155	92	3	0	0	0	0.45627	3	22519	22519;22613;22736		3.5965	1.7523	1	410760	+		25469	11403	16945	17105	34096;34097;34098	34096					0.06783193593491887
YNLVLMLQLH	10	Unmodified	_YNLVLMLQLH_					0	0	0			REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3473510742188	2	622.347009	1242.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.355	1	87.383	86.883	87.883	0.027573								0	0	0	0.33711	1	21542	21542		3.5965	0	1		+		25470	11403	16945	17105	34099	34099					0.06783193593491887
YNLVLRNLE	9	Unmodified	_YNLVLRNLE_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7749633789062	2	567.319306	1132.62406	-0.10692	-6.0659E-05	-0.80049	-0.00045413	-0.90741	-0.00051479	567.8201142785975	58.903	0.3315	58.903	58.762	59.093	0					17	11	2	0	0	0	0.22247	1	13020	13020		20.415	0	1	145880			25471	3464	16946	17106	34100	34100					0.06305103397380662
YNLWKEFRS	9	Unmodified	_YNLWKEFRS_					0	0	0		ENSG00000101670|ENST00000261292|LIPG	ENSG00000101670|ENST00000261292|LIPG	ENSG00000101670|ENST00000261292|LIPG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.31640625	2	621.81693	1241.61931	0.41815	0.00026002	0.15854	9.8583E-05	0.57669	0.0003586	621.8185822454836	80.059	3.4875	80.059	79.621	83.108	0					250	121	4	0	0	0	0.29105	2	20182	20182;20292		7.9102	0	1	1056700			25472	1270	16947	17107	34101;34102	34101					0.008162192546024016
YNLYGKDIKE	10	Unmodified	_YNLYGKDIKE_					0	0	0		ENSG00000244067|ENST00000493422|GSTA2;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000174156|ENST00000211122|GSTA3	ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.8250122070312	2	621.821878	1241.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.362	1	93.4	92.9	93.9	0.037369								0	0	0	0.33762	1	23367	23367		2.9952	0	1				25473	4569	16948	17108	34103	34103					0.018053624693038728
YNNEWLYMK	9	Unmodified	_YNNEWLYMK_					0	0	0			REV__ENST00000292211.4_1_1:154522462-154522513:-|nuORF	REV__ENST00000292211.4_1_1:154522462-154522513:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.7889404296875	2	630.789524	1259.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.516	1	74.516	74.016	75.016	0								0	0	0	0.24978	1	17785	17785		9.3831	2.0939	1		+		25474	11321	16949	17109	34104	34104					-0.05490535608328173
YNNEWLYMK	9	Unmodified	_YNNEWLYMK_					0	0	0			REV__ENST00000292211.4_1_1:154522462-154522513:-|nuORF	REV__ENST00000292211.4_1_1:154522462-154522513:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.3135375976562	2	630.789524	1259.56449	0.14221	8.9705E-05	-1.6269	-0.0010263	-1.4847	-0.00093655	630.7884849701115	72.336	1.0351	72.392	72.207	73.243	0.055931					55	35	2	0	0	0	0.23598	1	16949	16949		15.847	7.937	1	113660	+		25475	11321	16949	17109	34105	34105					-0.05490535608328173
YNNFYRFLP	9	Unmodified	_YNNFYRFLP_					0	0	0		nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	616.7901000976562	2	617.306198	1232.59784	0.20564	0.00012694	-1.4355	-0.00088613	-1.2298	-0.00075918	617.3052784553794	66.639	0.32103	66.704	66.602	66.923	0.065071					14	12	2	0	0	0	0.20845	1	15213	15213		21.747	7.8406	1	137590			25476	4295	16950	17110	34106	34106					-0.009151657741085728
YNNLMEHRW	9	Unmodified	_YNNLMEHRW_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.2698974609375	2	631.790389	1261.56623	0.37685	0.00023809	4.113	0.0025985	4.4898	0.0028366	632.2953728554008	57.413	0.087109	57.482	57.413	57.5	0.068375					4	2	2	0	0	0	0.25174	1	12430	12430		7.2892	0.56607	1	30784			25477	2876	16951	17111	34107	34107					-0.05409481799711102
YNNMFWKDK	9	Unmodified	_YNNMFWKDK_					0	0	0		tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1	tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1	tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.2901000976562	2	623.289691	1244.56483	0.30617	0.00019083	-0.97783	-0.00060947	-0.67165	-0.00041864	623.2892449391202	80.095	0.756	80.121	79.573	80.329	0.026428					48	26	3	0	0	0	0.27929	1	19252	19252		9.3831	4.0862	1	150750			25478	13556	16952	17112	34108	34108					-0.04767115888466833
YNNMFWKDK	9	Unmodified	_YNNMFWKDK_					0	0	0		tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1	tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1	tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	623.289691	1244.56483	0.38326	0.00023888	-1.0254	-0.00063911	-0.64211	-0.00040022	623.2888601245284	79.91	0.42713	79.91	79.652	80.079	0	-0.10574	-1.5783E-05	NaN	9.3831	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201760			25479	13556	16952	17112							-0.04767115888466833
YNNQIFWIY	9	Unmodified	_YNNQIFWIY_					0	0	0		tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.8058471679688	2	630.806031	1259.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.656	1	28.656	28.156	29.156	0								0	0	0	0.2927	1	3903	3903		0.52476	0	1				25480	13474	16953	17113	34109	34109					-0.021905854939632263
YNNTINMFA	9	Unmodified	_YNNTINMFA_					0	0	0		tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1	tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1	tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.2470092773438	2	544.247492	1086.48043	0.34871	0.00018978	-0.84745	-0.00046122	-0.49875	-0.00027144	544.2469266208017	91.728	0.78654	91.765	91.499	92.286	0.036499					61	27	4	0	0	0	0.12809	1	22872	22872		26.884	1.4843	1	1018900			25481	13713	16954	17114	34110	34110					-0.059350667052285644
YNNWLQFEF	9	Unmodified	_YNNWLQFEF_					0	0	0			REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	630.7879028320312	2	630.787838	1259.56112	0.23757	0.00014985	-0.022343	-1.4093E-05	0.21522	0.00013576	630.7876809206616	69.143	2.966	69.205	68.718	71.684	0.062126					255	114	4	0	0	0	0.19398	1	16457	16457		19.257	2.1441	1	7875700	+		25482	7896	16955	17115	34111	34111					-0.05827462390675464
YNPAGTAR	8	Unmodified	_YNPAGTAR_					0	0	0		tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.214599609375	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.482	1	97.523	97.023	98.023	0.040855								0	0	0	0.38822	1	24627	24627		1.8442	0	1				25483	13613	16956	17116	34112	34112					-0.01620514484955038
YNPHMMGDTA	10	Unmodified	_YNPHMMGDTA_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.29345703125	2	568.728609	1135.44266	-0.25186	-0.00014324	0.12176	6.925E-05	-0.13009	-7.3988E-05	568.728429248887	25.156	0.09726	25.156	25.114	25.211	0					10	8	2	0	0	0	0.31857	1	2887	2887		0	0	1	8570			25484	4834	16957	17117	34113	34113					-0.11963900962314256
YNQFIFYLK	9	Unmodified	_YNQFIFYLK_					0	0	0			REV__ENSG00000184986|ENST00000392519|TMEM121	REV__ENSG00000184986|ENST00000392519|TMEM121	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.32666015625	2	618.326599	1234.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.995	1	39.082	38.582	39.582	0.08688								0	0	0	0.2927	1	6863	6863		0.52476	0	1		+		25485	10649	16958	17118	34114	34114					0.030711755455058665
YNRAVDCWSL	10	Unmodified	_YNRAVDCWSL_					0	0	0		nc|ENSG00000183765|O96017-11|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	nc|ENSG00000183765|O96017-11|CHEK2	nc|ENSG00000183765|O96017-11|CHEK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.5255126953125	3	409.525607	1225.55499	0.70557	0.00028895	0.30004	0.00012288	1.0056	0.00041182	409.52511407536804	69.183	1.0356	69.183	68.983	70.018	0					91	35	3	0	0	0	0.43061	1	16275	16275		8.4443	0.28878	1	1086800			25486	134	16959	17119	34115	34115					-0.04876303893865952
YNRNRSHW	8	Unmodified	_YNRNRSHW_					0	0	0			REV__ENSG00000103544|ENST00000417362|VPS35L	REV__ENSG00000103544|ENST00000417362|VPS35L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7750244140625	2	566.773388	1131.53222	-0.015917	-9.0213E-06	3.9126	0.0022176	3.8967	0.0022086	567.2779350965022	105.75	0.27892	105.75	105.6	105.88	0					38	27	2	0	0	0	0.3576	1	27271	27271		7.9102	2.6795	1	103650	+		25487	8483	16960	17120	34116	34116					-0.028281421764404513
YNRNRSHW	8	Unmodified	_YNRNRSHW_					0	0	0			REV__ENSG00000103544|ENST00000417362|VPS35L	REV__ENSG00000103544|ENST00000417362|VPS35L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7874755859375	2	566.773388	1131.53222	0.25818	0.00014633	3.3423	0.0018944	3.6005	0.0020407	567.2772286952805	82.804	0.6189	82.826	82.424	83.043	0.021751					36	21	2	0	0	0	0.4772	1	20221	20221		15.847	1.0089	1	99090	+		25488	8483	16960	17120	34117	34117					-0.028281421764404513
YNRWMCYDE	9	Unmodified	_YNRWMCYDE_					0	0	0			REV__ENSG00000153147|ENST00000283131|SMARCA5	REV__ENSG00000153147|ENST00000283131|SMARCA5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.9309692382812	2	640.247166	1278.47978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.367	1	61.367	60.867	61.867	0								0	0	0	0.27427	1	13773	13773		4.3292	2.6766	1		+		25489	9688	16961	17121	34118	34118					-0.1483222941656095
YNSHARHLVR	10	Unmodified	_YNSHARHLVR_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2987670898438	2	626.83652	1251.65849	0.50134	0.00031426	0.53475	0.0003352	1.0361	0.00064945	626.8367399841231	65.709	0.24351	65.709	65.578	65.822	0					12	8	2	0	0	0	0.31689	1	15125	15125		8.1555	0.8663	1	54452			25490	5530	16962	17122	34119	34119					0.04272364328812728
YNSIEIRP	8	Unmodified	_YNSIEIRP_					0	0	0		ENST00000549588.5_1_12:60098582-60157842:+|nuORF	ENST00000549588.5_1_12:60098582-60157842:+|nuORF	ENST00000549588.5_1_12:60098582-60157842:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.264404296875	2	496.263999	990.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.26	1	37.26	36.76	37.76	0								0	0	0	0.38822	1	6467	6467		0.69038	0	1				25491	7095	16963	17123	34120	34120					0.017808834091511017
YNSTLLFW	8	Unmodified	_YNSTLLFW_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|202|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|202|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|202|2|anti-sense	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7933959960938	2	522.263468	1042.51238	0.27007	0.00014105	-4.0149	-0.0020968	-3.7448	-0.0019558	522.2615215502816	38.652	0.33274	38.652	38.488	38.82	0					21	12	3	0	0	0	0.35759	1	6863	6863		9.3474	0	1	39664			25492	7405	16964	17124	34121	34121					-0.0071733095976469485
YNSTLLFW	8	Unmodified	_YNSTLLFW_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|202|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|202|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|202|2|anti-sense	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	522.263468	1042.51238	0.27986	0.00014616	-3.5071	-0.0018316	-3.2272	-0.0016855	522.2614772858486	38.589	0.33408	38.676	38.461	38.795	0.08688	0.011634	0.00017461	NaN	9.3474	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33417			25493	7405	16964	17124							-0.0071733095976469485
YNSWFVLIM	9	Oxidation (M)	_YNSWFVLIM(Oxidation (M))_		YNSWFVLIM(1)		YNSWFVLIM(65)	0	0	1			REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3	REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.79345703125	2	594.791535	1187.56852	0.37308	0.0002219	2.081	0.0012377	2.454	0.0014596	594.792592155072	60.591	1.1663	60.591	60.31	61.477	0					118	41	4	0	0	0	0.01063	2	13628	13628;13651		65.235	9.7323	1	1000600	+		25494	12914	16965	17125	34122;34123	34122		344			-0.01776446114627106
YNSWFVLIM	9	Oxidation (M)	_YNSWFVLIM(Oxidation (M))_		YNSWFVLIM(1)		YNSWFVLIM(52)	0	0	1			REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3	REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.7910766601562	2	594.791535	1187.56852	0.11034	6.5631E-05	2.5166	0.0014969	2.627	0.0015625	594.7928136025814	60.536	1.1508	60.609	60.263	61.414	0.073421					99	39	4	0	0	0	0.028398	1	13471	13471		52.268	15.762	1	1001300	+		25495	12914	16965	17125	34124	34124		344			-0.01776446114627106
YNTLLFLPY	9	Unmodified	_YNTLLFLPY_					0	0	0		ENSG00000120942|ENST00000376810|UBIAD1	ENSG00000120942|ENST00000376810|UBIAD1	ENSG00000120942|ENST00000376810|UBIAD1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3087158203125	2	572.307875	1142.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.75	1	75.75	75.25	76.25	0								0	0	0	0.21527	1	18163	18163		15.847	0	1				25496	2139	16966	17126	34125	34125					0.0356008427991128
YNTPGSYVCVC	11	Unmodified	_YNTPGSYVCVC_					0	0	0		nc|ENSG00000184164|Q6UXH1-2|CRELD2;nc|ENSG00000184164|Q6UXH1-4|CRELD2;ENSG00000184164|ENST00000328268|CRELD2;nc|ENSG00000184164|Q6UXH1-6|CRELD2;ENST00000483652.5_1_22:50312390-50319315:+|nuORF;nc|ENSG00000184164|Q6UXH1-5|CRELD2	nc|ENSG00000184164|Q6UXH1-2|CRELD2	nc|ENSG00000184164|Q6UXH1-2|CRELD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2562255859375	2	603.251917	1204.48928	0.50159	0.00030259	-1.4964	-0.00090271	-0.99482	-0.00060012	603.2486533199315	86.629	0.37484	86.657	86.434	86.808	0.027573					69	17	5	0	0	0	0.31637	1	21301	21301		16.149	2.2431	1	617490			25497	4961	16967	17127	34126	34126					-0.10478461131037875
YNTTNTQVL	9	Unmodified	_YNTTNTQVL_					0	0	0			REV__ENSG00000004846|ENST00000404938|ABCB5	REV__ENSG00000004846|ENST00000404938|ABCB5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2642822265625	2	527.264196	1052.51384	-0.33254	-0.00017534	0.35142	0.00018529	0.018872	9.9505E-06	527.2643673160255	42.198	1.0439	42.288	42.072	43.116	0.089764					99	39	4	0	0	0	0.24021	1	7887	7887		13.906	0	1	1400200	+		25498	7930	16968	17128	34127	34127					-0.01031741661677188
YNVFCIPQN	9	Unmodified	_YNVFCIPQN_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2671508789062	2	549.257859	1096.50117	0.23663	0.00012997	-0.82732	-0.00045441	-0.59069	-0.00032444	549.7591451599396	51.095	0.65297	51.095	50.795	51.448	0					34	21	2	0	0	0	0.3182	1	10727	10727		4.3292	0	1	56310	+		25499	9340	16969	17129	34128	34128					-0.043224763255466314
YNVGEHNLFP	10	Unmodified	_YNVGEHNLFP_					0	0	0		nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;nc|ENSG00000114316|Q13107-3|USP4	nc|ENSG00000114316|Q13107-2|USP4	nc|ENSG00000114316|Q13107-2|USP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.3220825195312	2	595.285463	1188.55637	0.42887	0.0002553	4.0461	0.0024086	4.4749	0.0026639	595.287645055796	69.132	0.72016	69.132	68.775	69.496	0					36	26	2	0	0	0	0.30517	1	16074	16074		20.415	10.341	1	350930			25500	1835	16970	17130	34129	34129					-0.030363465334403372
YNVKRYLLYLH	11	Unmodified	_YNVKRYLLYLH_					0	0	0		ENST00000315183.11_2_16:24835199-24835373:+|nuORF	ENST00000315183.11_2_16:24835199-24835373:+|nuORF	ENST00000315183.11_2_16:24835199-24835373:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.6143493652344	3	494.613633	1480.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.49	1	114.49	113.99	114.99	0								0	0	0	0.34185	1	29238	29238		0.094841	0	1				25501	6016	16971	17131	34130	34130					0.09789274202375964
YNWHKTLSI	9	Unmodified	_YNWHKTLSI_					0	0	0			REV__ENST00000441724.1_1_1:6297183-6297874:+|nuORF	REV__ENST00000441724.1_1_1:6297183-6297874:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.29345703125	2	581.306198	1160.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.252	1	39.341	38.841	39.841	0.088562								0	0	0	0.27427	1	6941	6941		4.3292	0	1		+		25502	11887	16972	17132	34131	34131					0.023968342259195197
YNWTASSPVYG	11	Unmodified	_YNWTASSPVYG_					0	0	0		nc|ENSG00000254521|Q96PQ1-2|SIGLEC12;ENSG00000254521|ENST00000291707|SIGLEC12	nc|ENSG00000254521|Q96PQ1-2|SIGLEC12	nc|ENSG00000254521|Q96PQ1-2|SIGLEC12	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.7867431640625	2	622.782753	1243.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.269	1	86.269	85.769	86.769	0								0	0	0	0.32927	1	21371	21371		4.5289	0.19963	1				25503	7617	16973	17133	34132	34132					-0.06108070115897135
YNWTTAAPLLL	11	Unmodified	_YNWTTAAPLLL_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.8401489257812	2	631.842613	1261.67067	0.19174	0.00012115	-3.4594	-0.0021858	-3.2677	-0.0020646	632.3419621616266	60.189	0.47916	60.263	60.125	60.605	0.073421					23	16	2	0	0	0	0.36864	1	13293	13293		10.151	0.76745	1	133770			25504	2661	16974	17134	34133	34133					0.05030543228667739
YNYAYPYSY	9	Unmodified	_YNYAYPYSY_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2673950195312	2	602.253297	1202.49204	0.79284	0.00047749	-2.7693	-0.0016678	-1.9765	-0.0011904	602.2512559351986	85.084	0.43231	85.084	84.929	85.362	0					34	14	3	0	0	0	0.25979	1	21068	21068		11.64	0.81637	1	196000			25505	4217	16975	17135	34134	34134					-0.10110546410237475
YNYTWKQYV	9	Unmodified	_YNYTWKQYV_					0	0	0		ENST00000376544.7_1_9:82340538-82340694:+|nuORF	ENST00000376544.7_1_9:82340538-82340694:+|nuORF	ENST00000376544.7_1_9:82340538-82340694:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.8764953613281	3	422.204751	1263.59242	0.036026	1.521E-05	0.64602	0.00027275	0.68205	0.00028796	422.5399038553267	43.994	0.35279	43.994	43.859	44.212	0					17	11	2	0	0	0	0.25259	1	8525	8525		7.609	0	1	40063			25506	6245	16976	17136	34135	34135					-0.02882889356578744
YPAESVLAY	9	Unmodified	_YPAESVLAY_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.2567443847656	2	506.752933	1011.49131	0.25801	0.00013075	0.19259	9.7597E-05	0.4506	0.00022834	506.7529027015443	91.658	1.4516	91.693	91.384	92.835	0.035446					125	51	5	0	0	0	0.29105	1	22768	22768		7.9102	0.62092	1	2147500			25507	4826	16977	17137	34136	34136					-0.01397341059282553
YPAEWQDFL	9	Unmodified	_YPAEWQDFL_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7689819335938	2	584.769114	1167.52368	0.49142	0.00028737	-0.071954	-4.2076E-05	0.41947	0.00024529	584.7690354748756	86.021	0.71037	86.021	85.757	86.467	0					74	26	4	0	0	0	0.032194	2	21296	21296;21343		49.554	31.408	1	689620			25508	566	16978	17138	34137;34138	34137					-0.05338553656270051
YPAEWQDFL	9	Unmodified	_YPAEWQDFL_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7694702148438	2	584.769114	1167.52368	0.77658	0.00045412	-0.33659	-0.00019683	0.43998	0.00025729	584.7688396046902	86.034	0.75543	86.059	85.75	86.506	0.025169					71	28	4	0	0	0	0.032194	2	21134	21134;21182		49.554	31.408	1	634140			25509	566	16978	17138	34139;34140	34139					-0.05338553656270051
YPAHFGQLECL	11	Unmodified	_YPAHFGQLECL_					0	0	0		ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000566161.5_1_16:71808369-71823382:-|nuORF	ENSG00000166747|ENST00000299980|AP1G1	ENSG00000166747|ENST00000299980|AP1G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	639.8038940429688	2	639.302798	1276.59104	0.40849	0.00026115	-0.37548	-0.00024005	0.033012	2.1105E-05	639.3025349387632	63.601	0.89064	63.601	63.345	64.235	0					48	30	3	0	0	0	0.28838	3	14447	14447;14498;14524		19.362	13.476	1	254410			25510	4177	16979	17139	34141;34142;34143	34141					-0.03618846716972257
YPAHFGQLECL	11	Unmodified	_YPAHFGQLECL_					0	0	0		ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000566161.5_1_16:71808369-71823382:-|nuORF	ENSG00000166747|ENST00000299980|AP1G1	ENSG00000166747|ENST00000299980|AP1G1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	639.3030395507812	2	639.302798	1276.59104	0.36397	0.00023269	-0.0037915	-2.4239E-06	0.36018	0.00023026	639.3026998124722	63.47	0.67605	63.541	63.323	63.999	0.071018					39	23	3	0	0	0	0.297	2	14293	14293;14346		18.373	12.641	1	258850			25511	4177	16979	17139	34144;34145	34144					-0.03618846716972257
YPASTVQIL	9	Unmodified	_YPASTVQIL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.27667236328125	2	496.276575	990.538597	0.75561	0.00037499	-0.28889	-0.00014337	0.46671	0.00023162	496.2762470437013	65.3	0.76195	65.3	65.06	65.822	0					61	27	3	0	0	0	0.065576	2	14989	14936;14989		39.95	10.868	1	492030			25512	1254	16980	17140	34146;34147	34147					0.04294938211717181
YPASTVQIL	9	Unmodified	_YPASTVQIL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.2763366699219	2	496.276575	990.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.703	1	89.703	89.203	90.203	0								0	0	0	0.22786	1	22411	22411		13.906	0	1				25513	1254	16980	17140	34148	34148					0.04294938211717181
YPASTVQIL	9	Unmodified	_YPASTVQIL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.27642822265625	2	496.276575	990.538597	0.55522	0.00027554	-0.23948	-0.00011885	0.31574	0.00015669	496.27632013050464	65.234	0.841	65.303	65.035	65.876	0.068916					67	32	3	0	0	0	0.2125	2	14771	14771;14822		17.113	7.039	1	508950			25514	1254	16980	17140	34149;34150	34149					0.04294938211717181
YPCIAPVLF	9	Unmodified	_YPCIAPVLF_					0	0	0		ENST00000368590.9_3_6:116894024-116894096:+|nuORF	ENST00000368590.9_3_6:116894024-116894096:+|nuORF	ENST00000368590.9_3_6:116894024-116894096:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7715148925781	2	511.772614	1021.53067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.333	1	93.37	92.87	93.87	0.037369								0	0	0	0.24995	1	23358	23358		9.3474	0	1				25515	6185	16981	17141	34151	34151					0.02077087690577173
YPCILYGIL	9	Unmodified	_YPCILYGIL_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.7857055664062	2	527.785721	1053.55689	0.3313	0.00017486	-0.11146	-5.8828E-05	0.21984	0.00011603	527.7855481680905	103.92	0.57864	103.96	103.87	104.44	0.03791					114	57	3	0	0	0	0.2796	1	26609	26609		9.3474	0	1	707650			25516	5584	16982	17142	34152	34152					0.03225356862071749
YPCWYPYL	8	Unmodified	_YPCWYPYL_					0	0	0		ENST00000562078.5_1_15:74916674-74916908:+|nuORF	ENST00000562078.5_1_15:74916674-74916908:+|nuORF	ENST00000562078.5_1_15:74916674-74916908:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2388305664062	2	552.746596	1103.47864	0.86648	0.00047895	2.7857	0.0015398	3.6522	0.0020188	552.7484804661898	66.086	0.83157	66.086	65.879	66.711	0					54	31	3	0	0	0	0.3413	1	15373	15373		24.21	9.6283	1	274650			25517	7160	16983	17143	34153	34153					-0.06896075723170725
YPCWYPYL	8	Unmodified	_YPCWYPYL_					0	0	0		ENST00000562078.5_1_15:74916674-74916908:+|nuORF	ENST00000562078.5_1_15:74916674-74916908:+|nuORF	ENST00000562078.5_1_15:74916674-74916908:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2391967773438	2	552.746596	1103.47864	0.7673	0.00042412	2.7743	0.0015335	3.5416	0.0019576	552.7484184605299	66.011	0.63263	66.078	65.971	66.604	0.066872					51	23	3	0	0	0	0.35256	1	15063	15063		17.087	4.0441	1	342740			25518	7160	16983	17143	34154	34154					-0.06896075723170725
YPDDRTSRTL	10	Unmodified	_YPDDRTSRTL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.5386962890625	3	408.538681	1222.59421	0.058335	2.3832E-05	-0.24382	-9.9611E-05	-0.18549	-7.5779E-05	408.5385800242814	28.667	0.7322	28.667	28.378	29.11	0					66	34	3	0	0	0	0.46208	1	3910	3910		1.2148	0.35046	1	55737			25519	820	16984	17144	34155	34155					-0.00817880338604482
YPDDRTSRTL	10	Unmodified	_YPDDRTSRTL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	408.53851318359375	3	408.538681	1222.59421	-0.30675	-0.00012532	0.18956	7.7443E-05	-0.11719	-4.7877E-05	408.5387294131023	28.542	0.4615	28.624	28.41	28.872	0.082132					61	23	3	0	0	0	0.45133	1	3756	3756		2.4348	0.97967	1	44277			25520	820	16984	17144	34156	34156					-0.00817880338604482
YPDDRTSRTL	10	Unmodified	_YPDDRTSRTL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	408.538681	1222.59421	0.058335	2.3832E-05	-0.24382	-9.9611E-05	-0.18549	-7.5779E-05	408.5385800242814	28.667	0.7322	28.667	28.378	29.11	0	0.021395	-0.0002707	NaN	2.4348	66	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55737			25521	820	16984	17144							-0.00817880338604482
YPDEDDFYF	9	Unmodified	_YPDEDDFYF_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.1576843261719	3	404.157355	1209.45024	0.85464	0.00034541	-2.341	-0.00094613	-1.4863	-0.00060072	404.1577669723263	82.083	0.4323	82.083	81.931	82.364	0					41	15	4	0	0	0	0.28919	1	20118	20118		8.1555	0	1	144190			25522	2660	16985	17145	34157	34157					-0.14611146889433257
YPDEDDFYF	9	Unmodified	_YPDEDDFYF_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.158203125	3	404.157355	1209.45024	0.13259	5.3586E-05	0.88355	0.00035709	1.0161	0.00041068	404.158088058208	82.106	0.40947	82.127	81.938	82.347	0.021858					28	14	3	0	0	0	0.25162	1	19953	19953		8.1555	0	1	191670			25523	2660	16985	17145	34158	34158					-0.14611146889433257
YPDEIEYIF	9	Unmodified	_YPDEIEYIF_					0	0	0		nc|ENSG00000112715|P15692-10|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.77685546875	2	594.776605	1187.53866	0.26085	0.00015515	0.37121	0.00022079	0.63206	0.00037594	594.7766884540414	85.924	0.75929	85.924	85.708	86.467	0					82	29	4	0	0	0	0.12809	3	21290	21242;21290;21330		26.884	14.575	1	1596000			25524	1775	16986	17146	34159;34160;34161	34160					-0.04761106578939689
YPDEIEYIF	9	Unmodified	_YPDEIEYIF_					0	0	0		nc|ENSG00000112715|P15692-10|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.7769165039062	2	594.776605	1187.53866	0.35219	0.00020947	0.27745	0.00016502	0.62964	0.00037449	594.7765346036939	85.918	0.79999	85.943	85.663	86.463	0.025169					77	29	4	0	0	0	0.12809	2	21082	21082;21132		26.884	11.036	1	1385500			25525	1775	16986	17146	34162;34163	34162					-0.04761106578939689
YPDENGFDAF	10	Unmodified	_YPDENGFDAF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	587.73828125	2	587.738011	1173.46147	0.69666	0.00040945	-0.042649	-2.5066E-05	0.65401	0.00038439	587.7378960868919	69.802	1.262	69.802	69.269	70.531	0					128	45	4	0	0	0	0.012609	3	16347	16245;16297;16347		74.2	42.931	1	624480			25526	872	16987	17147	34164;34165;34166	34166					-0.1183232479529579
YPDENGFDAF	10	Unmodified	_YPDENGFDAF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	587.73828125	2	587.738011	1173.46147	0.63566	0.0003736	-0.068779	-4.0424E-05	0.56688	0.00033318	587.7379549312358	69.59	1.1185	69.652	69.308	70.426	0.062126					121	43	4	0	0	0	0.017192	3	16132	16082;16132;16178		70.332	32.156	1	620930			25527	872	16987	17147	34167;34168;34169	34168					-0.1183232479529579
YPDGIRHI	8	Unmodified	_YPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7587585449219	2	485.758884	969.503215	0.030135	1.4638E-05	0.23385	0.0001136	0.26399	0.00012824	485.758895068322	37.291	0.7512	37.291	37.086	37.837	0					43	27	3	0	0	0	0.33167	1	6472	6472		34.402	12.655	1	87007			25528	5191	16988	17148	34170	34170					0.017243204745682306
YPDGIRHI	8	Unmodified	_YPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7586364746094	2	485.758884	969.503215	0.046538	2.2606E-05	0.25159	0.00012221	0.29813	0.00014482	485.7588760119008	37.159	0.3727	37.243	37.073	37.445	0.084476					31	13	3	0	0	0	0.35759	1	6320	6320		16.149	16.149	1	78682			25529	5191	16988	17148	34171	34171					0.017243204745682306
YPDGNEGAIRF	11	Unmodified	_YPDGNEGAIRF_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.7938232421875	2	619.793652	1237.57275	-0.24534	-0.00015206	0.37093	0.0002299	0.12558	7.7836E-05	619.7939173159964	52.09	0.93203	52.09	51.652	52.584	0					68	32	3	0	0	0	0.21273	4	10934	10888;10934;10987;11065		28.234	16.739	1	124280			25530	4684	16989	17149	34172;34173;34174;34175	34173					-0.03653265367347558
YPDGNEGAIRF	11	Unmodified	_YPDGNEGAIRF_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.79345703125	2	619.793652	1237.57275	-0.060785	-3.7674E-05	0.085298	5.2867E-05	0.024513	1.5193E-05	619.7937153632087	51.975	0.89665	52.042	51.707	52.604	0.067173					56	33	2	0	0	0	0.18269	3	10799	10748;10799;10864		32.898	21.403	1	132590			25531	4684	16989	17149	34176;34177;34178	34177					-0.03653265367347558
YPDGRKEITF	10	Unmodified	_YPDGRKEITF_					0	0	0		ENSG00000151849|ENST00000381884|CENPJ	ENSG00000151849|ENST00000381884|CENPJ	ENSG00000151849|ENST00000381884|CENPJ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.2113342285156	3	409.211906	1224.61389	-0.52454	-0.00021465	-0.31288	-0.00012804	-0.83743	-0.00034269	409.21167877277827	41.263	0.60739	41.352	41.128	41.735	0.089764					56	23	3	0	0	0	0.37812	1	7538	7538		14.218	5.4728	1	115760			25532	3476	16990	17150	34179	34179					0.010564956721282215
YPDGRKEITF	10	Unmodified	_YPDGRKEITF_					0	0	0		ENSG00000151849|ENST00000381884|CENPJ	ENSG00000151849|ENST00000381884|CENPJ	ENSG00000151849|ENST00000381884|CENPJ	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	409.211906	1224.61389	-0.30058	-0.000123	-0.37636	-0.00015401	-0.67694	-0.00027701	409.2115725437933	41.344	0.63598	41.344	41.075	41.711	0	-0.0040785	-3.7264E-05	NaN	14.218	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136990			25533	3476	16990	17150							0.010564956721282215
YPDGSKPVKV	10	Unmodified	_YPDGSKPVKV_					0	0	0		ENST00000533863.1_2_11:117074025-117074655:+|nuORF;ENSG00000149591|ENST00000392951|TAGLN	ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENST00000533863.1_2_11:117074025-117074655:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.300537109375	2	545.300581	1088.58661	-0.12673	-6.9105E-05	0.15539	8.4734E-05	0.028661	1.5629E-05	545.3005446642121	28.684	0.43688	28.684	28.512	28.949	0					40	21	3	0	0	0	0.41617	2	3901	3901;3941		10.151	0.76745	1	42482			25534	3412	16991	17151	34180;34181	34180					0.0458601213174461
YPDGSKPVKV	10	Unmodified	_YPDGSKPVKV_					0	0	0		ENST00000533863.1_2_11:117074025-117074655:+|nuORF;ENSG00000149591|ENST00000392951|TAGLN	ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENST00000533863.1_2_11:117074025-117074655:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2999877929688	2	545.300581	1088.58661	-0.10435	-5.69E-05	0.4177	0.00022777	0.31335	0.00017087	545.300750714052	28.612	0.41206	28.694	28.512	28.924	0.082134					50	24	3	0	0	0	0.46208	1	3793	3793		2.4985	0.84587	1	40795			25535	3412	16991	17151	34182	34182					0.0458601213174461
YPDINFNRL	9	Unmodified	_YPDINFNRL_					0	0	0		ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG	ENSG00000227345|ENST00000616448|PARG	ENSG00000227345|ENST00000616448|PARG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2958984375	2	576.29583	1150.57711	0.42675	0.00024593	-0.10631	-6.1265E-05	0.32044	0.00018467	576.2956062093299	62.701	1.3411	62.701	62.392	63.733	0					113	49	4	0	0	0	0.00015475	3	14194	14150;14194;14234		137.42	99.45	1	1266600			25536	5611	16992	17152	34183;34184;34185	34184					0.007842438462375867
YPDINFNRL	9	Unmodified	_YPDINFNRL_					0	0	0		ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG	ENSG00000227345|ENST00000616448|PARG	ENSG00000227345|ENST00000616448|PARG	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.2960815429688	2	576.29583	1150.57711	0.38349	0.000221	-0.0063668	-3.6692E-06	0.37713	0.00021734	576.2956818733535	62.549	1.256	62.622	62.363	63.619	0.072701					91	48	3	0	0	0	0.00066972	3	14019	13976;14019;14065		128.93	88.975	1	1237700			25537	5611	16992	17152	34186;34187;34188	34187					0.007842438462375867
YPDIPKEEAF	10	Unmodified	_YPDIPKEEAF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.7955322265625	2	604.795329	1207.5761	0.67504	0.00040826	0.51953	0.00031421	1.1946	0.00072247	604.7953828311026	55.783	0.56589	55.783	55.497	56.063	0					47	19	3	0	0	0	0.13912	3	12073	12035;12073;12125		40.725	18.067	1	256080			25538	4299	16993	17153	34189;34190;34191	34190					-0.01938015313339747
YPDIPKEEAF	10	Unmodified	_YPDIPKEEAF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.7958984375	2	604.795329	1207.5761	0.66556	0.00040253	0.62086	0.00037549	1.2864	0.00077802	604.795304290638	55.704	0.62527	55.769	55.517	56.142	0.065128					47	22	3	0	0	0	0.17079	2	11930	11894;11930		37.075	15.538	1	225090			25539	4299	16993	17153	34192;34193	34193					-0.01938015313339747
YPDLFQVNL	9	Unmodified	_YPDLFQVNL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.787109375	2	554.787307	1107.56006	0.61315	0.00034017	0.12393	6.8754E-05	0.73708	0.00040892	554.7871342878301	88.267	0.66934	88.267	88.032	88.701	0					59	26	4	0	0	0	0.0072241	2	21961	21961;22009		75.761	28.012	1	729950			25540	4759	16994	17154	34194;34195	34194					0.010583232404314913
YPDLFQVNL	9	Unmodified	_YPDLFQVNL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7874145507812	2	554.787307	1107.56006	0.57827	0.00032082	0.1416	7.856E-05	0.71987	0.00039938	554.7871759210249	88.25	0.57233	88.28	88.023	88.596	0.030037					47	21	3	0	0	0	0.0089808	2	21829	21788;21829		70.332	28.492	1	763420			25541	4759	16994	17154	34196;34197	34197					0.010583232404314913
YPDLSELLM	9	Oxidation (M)	_YPDLSELLM(Oxidation (M))_		YPDLSELLM(1)		YPDLSELLM(57)	0	0	1		ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.7656860351562	2	548.765183	1095.51581	0.75426	0.00041391	2.5792	0.0014154	3.3335	0.0018293	548.764792151371	85.33	0.58584	85.353	85.135	85.72	0.023125					60	23	4	0	0	0	0.021119	3	20908	20908;20936;20953		57.471	21.427	1	436400			25542	1808	16995	17155	34198;34199;34200	34198		107			-0.02812448968074932
YPDLVHKV	8	Unmodified	_YPDLVHKV_					0	0	0		MYO9B-ABHD8|1|fusion;ENSG00000127220|ENST00000247706|ABHD8	MYO9B-ABHD8|1|fusion	MYO9B-ABHD8|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.7586364746094	2	485.77146	969.528367	0.036632	1.7795E-05	-3.8536	-0.0018719	-3.8169	-0.0018542	485.7696364358216	37.038	0.4734	37.12	36.944	37.418	0.081902					20	17	2	0	0	0	0.51887	1	6320	6320		10.183	4.4515	1	24961			25543	7441	16996	17156	34201	34201					0.0423837527713431
YPDLVHKV	8	Unmodified	_YPDLVHKV_					0	0	0		MYO9B-ABHD8|1|fusion;ENSG00000127220|ENST00000247706|ABHD8	MYO9B-ABHD8|1|fusion	MYO9B-ABHD8|1|fusion	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	485.77146	969.528367	0.024198	1.1755E-05	-4.1616	-0.0020216	-4.1374	-0.0020098	485.76953213389953	37.176	0.59325	37.176	36.983	37.577	0	0.028016	-5.9833E-05	NaN	10.183	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33339			25544	7441	16996	17156							0.0423837527713431
YPDNHQEFS	9	Unmodified	_YPDNHQEFS_					0	0	0		ENSG00000169967|ENST00000682094|MAP3K2	ENSG00000169967|ENST00000682094|MAP3K2	ENSG00000169967|ENST00000682094|MAP3K2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2763671875	2	568.735803	1135.45705	0.50605	0.00028781	-2.4457	-0.0013909	-1.9396	-0.0011031	568.7344333677551	79.615	0.4164	79.615	79.398	79.815	0					25	14	2	0	0	0	0.2446	1	19319	19319		11.64	5.4345	1	123830			25545	4369	16997	17157	34202	34202					-0.10525789218172577
YPDNHQEFS	9	Unmodified	_YPDNHQEFS_					0	0	0		ENSG00000169967|ENST00000682094|MAP3K2	ENSG00000169967|ENST00000682094|MAP3K2	ENSG00000169967|ENST00000682094|MAP3K2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2763671875	2	568.735803	1135.45705	0.23984	0.00013641	-2.2147	-0.0012596	-1.9749	-0.0011232	568.7344825377447	79.542	0.29582	79.568	79.415	79.71	0.026436					18	10	2	0	0	0	0.2446	1	19155	19155		11.64	1.5664	1	86883			25546	4369	16997	17157	34203	34203					-0.10525789218172577
YPDPAIAQF	9	Unmodified	_YPDPAIAQF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.25335693359375	2	511.2531	1020.49165	0.4337	0.00022173	-0.65506	-0.0003349	-0.22136	-0.00011317	511.2528652461239	68.613	0.47926	68.613	68.348	68.828	0					31	16	3	0	0	0	0.0569	1	15980	15980		41.84	17.819	1	186280			25547	4403	16998	17158	34204	34204					-0.01777921339430577
YPDPAIAQF	9	Unmodified	_YPDPAIAQF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.25286865234375	2	511.2531	1020.49165	0.35129	0.0001796	-0.30401	-0.00015543	0.047277	2.4171E-05	511.2528387458925	68.538	0.67493	68.601	68.408	69.083	0.063507					38	25	3	0	0	0	0.083124	1	15807	15807		36.127	12.106	1	162790			25548	4403	16998	17158	34205	34205					-0.01777921339430577
YPDPEVVWF	9	Unmodified	_YPDPEVVWF_					0	0	0		nc|ENSG00000065534|Q15746-10|MYLK;nc|ENSG00000065534|Q15746-8|MYLK;nc|ENSG00000065534|Q15746-9|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK	nc|ENSG00000065534|Q15746-10|MYLK	nc|ENSG00000065534|Q15746-10|MYLK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.2742309570312	2	576.274032	1150.53351	0.16685	9.6153E-05	-0.20083	-0.00011573	-0.033977	-1.958E-05	576.2739890673313	89.571	0.95789	89.571	89.143	90.101	0					81	36	3	0	0	0	0.17491	1	22421	22421		28.487	20.577	1	468600			25549	684	16999	17159	34206	34206					-0.03573365650913729
YPDPEVVWF	9	Unmodified	_YPDPEVVWF_					0	0	0		nc|ENSG00000065534|Q15746-10|MYLK;nc|ENSG00000065534|Q15746-8|MYLK;nc|ENSG00000065534|Q15746-9|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK	nc|ENSG00000065534|Q15746-10|MYLK	nc|ENSG00000065534|Q15746-10|MYLK	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.792724609375	2	576.274032	1150.53351	0.17201	9.9127E-05	0.053039	3.0565E-05	0.22505	0.00012969	576.2740705084681	89.581	0.91499	89.613	89.17	90.085	0.032257					72	34	3	0	0	0	0.17491	1	22219	22219		28.487	19.139	1	523000			25550	684	16999	17159	34207	34207					-0.03573365650913729
YPDPYGGEKL	10	Unmodified	_YPDPYGGEKL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.7744750976562	2	569.774396	1137.53424	0.36298	0.00020681	-0.0090973	-5.1834E-06	0.35388	0.00020163	569.7743715694844	47.434	2.475	47.434	46.839	49.314	0					208	85	5	0	0	0	7.9948E-06	6	9553	9421;9467;9509;9553;9597;9645		135.86	99.357	1	1883200			25551	5715	17000	17160	34208;34209;34210;34211;34212;34213	34211					-0.029025710018458994
YPDPYGGEKL	10	Unmodified	_YPDPYGGEKL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7744750976562	2	569.774396	1137.53424	0.40385	0.0002301	-0.0062534	-3.563E-06	0.39759	0.00022654	569.7743207365829	47.31	1.4615	47.393	46.984	48.445	0.083096					149	55	4	0	0	0	2.2499E-05	6	9359	9271;9314;9359;9401;9449;9496		128.58	128.58	1	1596500			25552	5715	17000	17160	34214;34215;34216;34217;34218;34219	34216					-0.029025710018458994
YPDPYSRASL	10	Unmodified	_YPDPYSRASL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7854614257812	2	584.785296	1167.55604	0.50655	0.00029622	0.024292	1.4206E-05	0.53084	0.00031043	584.7852883392026	48.037	1.8686	48.037	47.583	49.452	0					177	64	4	0	0	0	1.8874E-07	2	9709	9668;9709		150.62	95.845	1	3477800			25553	5715	17001	17161	34220;34221	34221					-0.021037662532762624
YPDPYSRASL	10	Unmodified	_YPDPYSRASL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7855224609375	2	584.785296	1167.55604	0.84202	0.0004924	-0.29276	-0.0001712	0.54926	0.0003212	584.7851249563043	47.921	1.5651	48.001	47.593	49.159	0.080029					151	56	4	0	0	0	1.5419E-05	2	9558	9511;9558		132.13	77.361	1	3128300			25554	5715	17001	17161	34222;34223	34223					-0.021037662532762624
YPDQENNKL	9	Unmodified	_YPDQENNKL_					0	0	0		nc|ENSG00000163430|Q12841-2|FSTL1;ENSG00000163430|ENST00000295633|FSTL1	nc|ENSG00000163430|Q12841-2|FSTL1	nc|ENSG00000163430|Q12841-2|FSTL1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3139038085938	2	560.767103	1119.51965	-0.063064	-3.5364E-05	-1.274	-0.00071442	-1.3371	-0.00074979	560.7663873200395	31.03	0.50605	31.03	30.799	31.305	0					63	24	3	0	0	0	0.25162	1	4559	4559		8.1555	0.8663	1	92416			25555	3900	17002	17162	34224	34224					-0.03532643149992509
YPDRIMNTF	9	Oxidation (M)	_YPDRIM(Oxidation (M))NTF_		YPDRIM(1)NTF		YPDRIM(220)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7741088867188	2	586.773874	1171.53319	0.41531	0.00024369	-0.069497	-4.0779E-05	0.34581	0.00020291	586.7738503665643	46.661	1.2563	46.661	46.384	47.64	0					215	56	5	0	0	0	6.7628E-24	8	9332	9247;9254;9289;9332;9374;9425;9475;9518		220.1	167.83	1	9877200			25556	5708;5147	17003	17163	34225;34226;34227;34228;34229;34230;34231;34232	34228		294			-0.04571108642426225
YPDRIMNTF	9	Oxidation (M)	_YPDRIM(Oxidation (M))NTF_		YPDRIM(1)NTF		YPDRIM(230)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7742309570312	2	586.773874	1171.53319	0.43419	0.00025477	-0.29263	-0.00017171	0.14156	8.3063E-05	586.773890803241	48.252	5.3225	48.252	47.436	52.758	0					555	185	6	0	0	0	7.0472E-32	23	9876	9564;9607;9654;9740;9787;9832;9876;9918;9963;10007;10049;10093;10145;10194;10236;10282;10353;10401;10452;10503;10606;10655;10760		234.93	173.57	1	7763400			25557	5708;5147	17003	17163	34233;34234;34235;34236;34237;34238;34239;34240;34241;34242;34243;34244;34245;34246;34247;34248;34249;34250;34251;34252;34253;34254;34255	34239		294			-0.04571108642426225
YPDRIMNTF	9	Oxidation (M)	_YPDRIM(Oxidation (M))NTF_		YPDRIM(1)NTF		YPDRIM(190)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7740478515625	2	586.773874	1171.53319	0.53296	0.00031272	-0.20293	-0.00011907	0.33003	0.00019365	586.7737675296614	46.562	1.2486	46.645	46.391	47.639	0.083096					197	61	5	0	0	0	2.3286E-13	8	9172	9096;9133;9172;9212;9250;9294;9338;9385		192.32	132.57	1	8566000			25558	5708;5147	17003	17163	34256;34257;34258;34259;34260;34261;34262;34263	34258		294			-0.04571108642426225
YPDRIMNTF	9	Oxidation (M)	_YPDRIM(Oxidation (M))NTF_		YPDRIM(1)NTF		YPDRIM(220)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.774169921875	2	586.773874	1171.53319	0.67506	0.00039611	-0.47677	-0.00027976	0.19829	0.00011635	586.7737455375908	48.185	4.4408	48.265	47.373	51.814	0.080029					497	163	6	0	0	0	6.7628E-24	16	9721	9427;9492;9575;9625;9674;9721;9767;9816;9862;9906;9955;9998;10042;10088;10135;10286		220.1	158.74	1	6344300			25559	5708;5147	17003	17163	34264;34265;34266;34267;34268;34269;34270;34271;34272;34273;34274;34275;34276;34277;34278;34279	34269		294			-0.04571108642426225
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7767333984375	2	578.776416	1155.53828	0.55354	0.00032037	0.025832	1.4951E-05	0.57937	0.00033533	578.7764285005298	55.377	3.7657	55.377	54.451	58.217	0					360	142	5	0	0	0	1.126E-12	6	11957	11957;12002;12091;12141;12459;12505		179.28	89.149	1	5194100			25560	5708;5147	17003	17164	34280;34281;34282;34283;34284;34285	34280					-0.033268047797946565
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.2952880859375	2	578.776416	1155.53828	0.037298	2.1587E-05	0.59544	0.00034463	0.63274	0.00036621	578.7768570007548	58.435	0.69856	58.435	58.256	58.955	0					40	25	2	0	0	0	0.2418	1	13023	13023		13.906	5.9959	1	74076			25561	5708;5147	17003	17164	34286	34286					-0.033268047797946565
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.776611328125	2	578.776416	1155.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.28	1	55.345	54.845	55.845	0.065128								0	0	0	4.7665000000000004E-27	1	11786	11786		176.43	86.292	1				25562	5708;5147	17003	17164	34287	34287					-0.033268047797946565
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7767944335938	2	578.776416	1155.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.437	1	55.502	55.002	56.002	0.065128								0	0	0	4.7665000000000004E-27	1	11834	11834		176.43	62.241	1				25563	5708;5147	17003	17164	34288	34288					-0.033268047797946565
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.77685546875	2	578.776416	1155.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.904	1	55.969	55.469	56.469	0.065128								0	0	0	0.022376	1	11976	11976		61.602	13.529	1				25564	5708;5147	17003	17164	34289	34289					-0.033268047797946565
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2952880859375	2	578.776416	1155.53828	0.30107	0.00017425	-0.39991	-0.00023146	-0.098833	-5.7202E-05	578.7758417257834	58.819	0.1128	58.89	58.804	58.917	0.070477					5	3	2	0	0	0	0.25281	1	12853	12853		6.7232	1.4925	1	58007			25565	5708;5147	17003	17164	34290	34290					-0.033268047797946565
YPDSDAVLICF	11	Unmodified	_YPDSDAVLICF_					0	0	0		ENSG00000115963|ENST00000263895|RND3;ENSG00000108830|ENST00000587250|RND2	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7896728515625	2	621.789189	1241.56383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.417	1	91.417	90.917	91.917	0								0	0	0	0.27893	1	22935	22935		17.113	4.8722	1				25566	1931	17004	17165	34291	34291					-0.04729375048032125
YPDSDAVLICF	11	Unmodified	_YPDSDAVLICF_					0	0	0		ENSG00000115963|ENST00000263895|RND3;ENSG00000108830|ENST00000587250|RND2	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.7904052734375	2	621.789189	1241.56383	-0.0018938	-1.1775E-06	0.89771	0.00055819	0.89582	0.00055701	622.2917237246032	91.394	0.9707	91.43	90.828	91.799	0.035446					68	34	3	0	0	0	0.30798	2	22775	22775;22793		17.113	4.9514	1	123840			25567	1931	17004	17165	34292;34293	34292					-0.04729375048032125
YPDSHLPTL	9	Unmodified	_YPDSHLPTL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.7638549804688	2	521.763832	1041.51311	0.59555	0.00031074	-0.15081	-7.8688E-05	0.44474	0.00023205	521.7636569290105	54.219	1.155	54.219	53.739	54.894	0					128	47	4	0	0	0	6.8107E-09	5	11580	11526;11580;11628;11674;11715		164.52	97.171	1	989780			25568	2126	17005	17166	34294;34295;34296;34297;34298	34295					-0.00598536310712916
YPDSHLPTL	9	Unmodified	_YPDSHLPTL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7638549804688	2	521.763832	1041.51311	0.47933	0.0002501	0.060821	3.1734E-05	0.54015	0.00028183	521.7637177652999	54.158	1.1658	54.223	53.761	54.927	0.065128					125	52	4	0	0	0	2.3187E-06	5	11422	11376;11422;11466;11511;11550		156.16	88.812	1	811900			25569	2126	17005	17166	34299;34300;34301;34302;34303	34300					-0.00598536310712916
YPDSKDLTM	9	Oxidation (M)	_YPDSKDLTM(Oxidation (M))_		YPDSKDLTM(1)		YPDSKDLTM(44)	0	0	1		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;ENST00000536137.1_1_12:4714126-4719451:+|nuORF	nc|ENSG00000010219|Q9NR20-5|DYRK4	nc|ENSG00000010219|Q9NR20-5|DYRK4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2445678710938	2	543.244615	1084.47468	0.10031	5.4491E-05	-0.046338	-2.5173E-05	0.053969	2.9318E-05	543.2445753293788	35.044	0.58488	35.044	34.776	35.361	0					48	20	3	0	0	0	0.048027	1	5787	5787		43.772	25.626	1	112600			25570	410	17006	17167	34304	34304		17			-0.06418210007564085
YPDTDVFL	8	Unmodified	_YPDTDVFL_					0	0	0		ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2320251464844	2	485.231833	968.449113	-0.0026044	-1.2637E-06	0.15085	7.3198E-05	0.14825	7.1935E-05	485.2317237947904	74.108	0.8647	74.108	73.69	74.555	0					68	31	3	0	0	0	0.53423	1	17622	17622		5.2307	0	1	518420			25571	1399	17007	17168	34305	34305					-0.03637316467643359
YPDTDVFL	8	Unmodified	_YPDTDVFL_					0	0	0		ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.2314147949219	2	485.231833	968.449113	0.1752	8.501E-05	-0.026664	-1.2938E-05	0.14853	7.2072E-05	485.23172146991413	74.162	0.89745	74.211	73.748	74.645	0.048546					48	32	2	0	0	0	0.48651	1	17513	17513		14.582	14.582	1	314470			25572	1399	17007	17168	34306	34306					-0.03637316467643359
YPDTDVILM	9	Oxidation (M)	_YPDTDVILM(Oxidation (M))_		YPDTDVILM(1)		YPDTDVILM(67)	0	0	1		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7575073242188	2	541.757358	1081.50016	0.56228	0.00030462	-0.061282	-3.32E-05	0.501	0.00027142	541.7572333081645	64.228	1.669	64.228	63.649	65.318	0					128	59	4	0	0	0	0.0099477	3	14668	14619;14668;14718		67.344	67.344	1	1442400			25573	716	17008	17169	34307;34308;34309	34308		40			-0.0373273548511861
YPDTDVILM	9	Oxidation (M)	_YPDTDVILM(Oxidation (M))_		YPDTDVILM(1)		YPDTDVILM(85)	0	0	1		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7576293945312	2	541.757358	1081.50016	0.79201	0.00042908	0.079387	4.3008E-05	0.87139	0.00047208	541.7574497239023	66.451	1.5817	66.451	65.318	66.9	0					152	59	4	0	0	0	0.0046476	4	15298	15248;15298;15400;15445		85.357	85.357	1	1133400			25574	716	17008	17169	34310;34311;34312;34313	34311		40			-0.0373273548511861
YPDTDVILM	9	Oxidation (M)	_YPDTDVILM(Oxidation (M))_		YPDTDVILM(1)		YPDTDVILM(71)	0	0	1		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7577514648438	2	541.757358	1081.50016	0.53628	0.00029053	-0.031537	-1.7085E-05	0.50474	0.00027345	541.7573012394859	64.073	1.3929	64.144	63.797	65.19	0.071022					104	50	3	0	0	0	0.0088567	4	14448	14399;14448;14492;14535		70.716	70.716	1	1415600			25575	716	17008	17169	34314;34315;34316;34317	34315		40			-0.0373273548511861
YPDTDVILM	9	Oxidation (M)	_YPDTDVILM(Oxidation (M))_		YPDTDVILM(1)		YPDTDVILM(85)	0	0	1		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7576293945312	2	541.757358	1081.50016	0.70491	0.00038189	0.16708	9.0515E-05	0.87199	0.00047241	541.7575167115401	66.413	1.4755	66.48	65.478	66.954	0.066872					164	57	5	0	0	0	0.0046476	3	15131	15080;15131;15172		85.357	85.357	1	1335500			25576	716	17008	17169	34318;34319;34320	34319		40			-0.0373273548511861
YPDVWLTLE	9	Unmodified	_YPDVWLTLE_					0	0	0			REV__ENSG00000159388|ENST00000290551|BTG2	REV__ENSG00000159388|ENST00000290551|BTG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2625122070312	2	568.28714	1134.55973	0.30754	0.00017477	-1.4203	-0.00080714	-1.1128	-0.00063237	568.2864622862111	55.763	0.67492	55.828	55.335	56.01	0.065128					36	24	2	0	0	0	0.20004	1	11792	11792		23.148	2.6948	1	222620	+		25577	9152	17009	17170	34321	34321					-0.0021709647940042487
YPDYYKIIL	9	Unmodified	_YPDYYKIIL_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	594.3215942382812	2	594.320983	1186.62741	0.22844	0.00013577	0.53439	0.0003176	0.76283	0.00045337	594.321296469053	71.641	0.55682	71.641	71.415	71.972	0					51	19	4	0	0	0	0.018465	2	16896	16896;16949		59.368	41.233	1	781460			25578	3964	17010	17171	34322;34323	34322					0.04156353451389805
YPDYYKIIL	9	Unmodified	_YPDYYKIIL_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.32177734375	2	594.320983	1186.62741	0.16267	9.6676E-05	0.48025	0.00028542	0.64292	0.0003821	594.3213022982028	71.548	0.51395	71.607	71.41	71.924	0.058578					55	18	4	0	0	0	0.018465	1	16722	16722		59.368	41.233	1	676400			25579	3964	17010	17171	34324	34324					0.04156353451389805
YPEDFAIDL	9	Unmodified	_YPEDFAIDL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7559204101562	2	541.755672	1081.49679	0.84447	0.0004575	0.0014032	7.6019E-07	0.84588	0.00045826	541.7555077798762	81.123	1.0157	81.123	80.674	81.69	0					94	34	5	0	0	0	0.10833	3	19847	19794;19847;19901		30.637	10.183	1	757580			25580	1018	17011	17172	34325;34326;34327	34326					-0.04069662267465901
YPEDFAIDL	9	Unmodified	_YPEDFAIDL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.7562255859375	2	541.755672	1081.49679	0.65657	0.0003557	0.11716	6.3472E-05	0.77373	0.00041917	541.7556500653674	81.129	0.87617	81.152	80.741	81.617	0.023605					81	31	3	0	0	0	0.031665	4	19638	19592;19638;19683;19736		49.933	23.049	1	835680			25581	1018	17011	17172	34328;34329;34330;34331	34329					-0.04069662267465901
YPEDVAEELI	10	Unmodified	_YPEDVAEELI_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8195190429688	2	589.284794	1176.55504	0.50637	0.0002984	-1.2036	-0.00070924	-0.69719	-0.00041084	589.2841647589065	75.808	0.16173	75.808	75.674	75.836	0					10	8	2	0	0	0	0.28526	1	18186	18186		27.629	4.8925	1	387640			25582	1079	17012	17173	34332	34332					-0.02618025412834868
YPEDVSEEL	9	Unmodified	_YPEDVSEEL_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.7406005859375	2	540.740219	1079.46589	0.24171	0.0001307	0.031174	1.6857E-05	0.27289	0.00014756	540.7400278743283	56.816	0.58987	56.816	56.57	57.16	0					32	21	2	0	0	0	0.10833	1	12389	12389		30.637	0	1	147120			25583	3311	17013	17174	34333	34333					-0.07066860372378869
YPEDVSEEL	9	Unmodified	_YPEDVSEEL_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.7404174804688	2	540.740219	1079.46589	0.44368	0.00023991	-0.16332	-8.8313E-05	0.28036	0.0001516	540.7399282168005	56.803	0.6329	56.869	56.571	57.204	0.066448					35	22	4	0	0	0	0.10833	2	12248	12248;12256		30.637	0	1	102690			25584	3311	17013	17174	34334;34335	34334					-0.07066860372378869
YPEEFEKLL	9	Unmodified	_YPEEFEKLL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.30029296875	2	584.300247	1166.58594	0.95772	0.0005596	-0.26538	-0.00015506	0.69234	0.00040454	584.2999201278592	66.373	1.082	66.373	66.106	67.188	0					105	40	4	0	0	0	0.00066972	3	15280	15280;15324;15374		128.93	57.01	1	1331700			25585	4254	17014	17175	34336;34337;34338	34336					0.009311726920486763
YPEEFEKLL	9	Unmodified	_YPEEFEKLL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.3007202148438	2	584.300247	1166.58594	0.94458	0.00055192	-0.038595	-2.2551E-05	0.90598	0.00052937	584.3000268223504	66.302	0.91427	66.369	66.211	67.126	0.066872					97	34	4	0	0	0	0.00066972	2	15132	15132;15173		128.93	57.01	1	1214200			25586	4254	17014	17175	34339;34340	34339					0.009311726920486763
YPEEVSSMVL	10	Oxidation (M)	_YPEEVSSM(Oxidation (M))VL_		YPEEVSSM(1)VL		YPEEVSSM(44)VL	0	0	1		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2738647460938	2	585.273372	1168.53219	0.29683	0.00017373	-0.6113	-0.00035778	-0.31447	-0.00018405	585.2734534619635	59.204	0.60292	59.204	58.955	59.558	0					56	22	4	0	0	0	0.11192	1	13086	13086		43.858	23.405	1	441170			25587	1646	17015	17176	34341	34341		97			-0.045333678019687795
YPEEVSSMVL	10	Oxidation (M)	_YPEEVSSM(Oxidation (M))VL_		YPEEVSSM(1)VL		YPEEVSSM(48)VL	0	0	1		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2740478515625	2	585.273372	1168.53219	0.56148	0.00032862	-0.16441	-9.6223E-05	0.39707	0.00023239	585.2730403511924	61.441	0.63823	61.441	60.913	61.551	0					49	26	3	0	0	0	0.085977	1	13779	13779		47.749	28.492	1	402860			25588	1646	17015	17176	34342	34342		97			-0.045333678019687795
YPEEVSSMVL	10	Oxidation (M)	_YPEEVSSM(Oxidation (M))VL_		YPEEVSSM(1)VL		YPEEVSSM(50)VL	0	0	1		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2735595703125	2	585.273372	1168.53219	0.55248	0.00032335	-0.35702	-0.00020895	0.19546	0.0001144	585.2732684372603	59.123	0.67627	59.194	58.945	59.622	0.070942					52	26	3	0	0	0	0.078033	2	12964	12917;12964		49.933	29.479	1	306440			25589	1646	17015	17176	34343;34344	34344		97			-0.045333678019687795
YPEGFEIHSM	10	Oxidation (M)	_YPEGFEIHSM(Oxidation (M))_		YPEGFEIHSM(1)		YPEGFEIHSM(160)	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.2633666992188	2	613.263339	1224.51212	-0.068596	-4.2068E-05	0.16502	0.0001012	0.096421	5.9131E-05	613.2633692295606	48.642	1.375	48.642	48.159	49.534	0					126	47	4	0	0	0	9.0599E-11	5	9878	9830;9878;9929;9972;10038		160.52	122.34	1	647710			25590	727	17016	17177	34345;34346;34347;34348;34349	34346		41			-0.09115118741942752
YPEGFEIHSM	10	Oxidation (M)	_YPEGFEIHSM(Oxidation (M))_		YPEGFEIHSM(1)		YPEGFEIHSM(180)	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.263427734375	2	613.263339	1224.51212	-0.072713	-4.4592E-05	0.071999	4.4155E-05	-0.00071325	-4.3741E-07	613.2633453125568	50.132	2.3221	50.132	49.452	51.774	0					190	80	4	0	0	0	3.5071E-16	9	10374	10149;10226;10276;10327;10374;10414;10458;10512;10566		183.04	143.09	1	662360			25591	727	17016	17177	34350;34351;34352;34353;34354;34355;34356;34357;34358	34354		41			-0.09115118741942752
YPEGFEIHSM	10	Oxidation (M)	_YPEGFEIHSM(Oxidation (M))_		YPEGFEIHSM(1)		YPEGFEIHSM(140)	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.2634887695312	2	613.263339	1224.51212	0.041754	2.5606E-05	0.098323	6.0298E-05	0.14008	8.5904E-05	613.2633899416933	48.519	1.1301	48.599	48.185	49.315	0.080032					97	38	4	0	0	0	3.9736E-07	4	9712	9663;9712;9761;9805		142.08	102.13	1	590810			25592	727	17016	17177	34359;34360;34361;34362	34360		41			-0.09115118741942752
YPEGFEIHSM	10	Oxidation (M)	_YPEGFEIHSM(Oxidation (M))_		YPEGFEIHSM(1)		YPEGFEIHSM(170)	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.263427734375	2	613.263339	1224.51212	0.066806	4.097E-05	0.091155	5.5902E-05	0.15796	9.6872E-05	613.2633152814841	50.036	2.4053	50.11	49.308	51.713	0.07312					154	89	3	0	0	0	4.5927E-11	6	10193	10104;10149;10193;10285;10333;10379		168.66	128.71	1	582610			25593	727	17016	17177	34363;34364;34365;34366;34367;34368	34365		41			-0.09115118741942752
YPEGFEIHSM	10	Unmodified	_YPEGFEIHSM_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.2659301757812	2	605.265881	1208.51721	0.54598	0.00033046	-1.4987	-0.00090714	-0.95276	-0.00057668	605.264696140752	56.188	0.88362	56.188	55.841	56.725	0					50	32	2	0	0	0	0.0010827	5	12261	12170;12215;12247;12261;12310		88.954	63.555	1	275140			25594	727	17016	17178	34369;34370;34371;34372;34373	34372					-0.07870814879311183
YPEGFEIHSM	10	Unmodified	_YPEGFEIHSM_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.7543334960938	2	605.265881	1208.51721	0.55642	0.00033678	-2.2652	-0.001371	-1.7088	-0.0010343	605.2641375231858	56.068	0.8089	56.134	55.897	56.706	0.066452					44	30	2	0	0	0	0.0072434	3	12077	12027;12077;12110		78.728	46.523	1	289450			25595	727	17016	17178	34374;34375;34376	34375					-0.07870814879311183
YPEHISNIISL	11	Unmodified	_YPEHISNIISL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3430786132812	2	643.342978	1284.6714	0.64412	0.00041439	-0.095902	-6.1698E-05	0.54821	0.00035269	643.3430300336702	65.745	1.4113	65.745	65.224	66.635	0					128	51	4	0	0	0	0.0071455	4	15131	15083;15131;15178;15234		88.364	33.129	1	1868000			25596	2244	17017	17179	34377;34378;34379;34380	34378					0.04045337877732891
YPEHISNIISL	11	Unmodified	_YPEHISNIISL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3430786132812	2	643.342978	1284.6714	0.43277	0.00027842	0.28207	0.00018146	0.71484	0.00045989	643.3434232554011	65.758	1.3534	65.825	65.316	66.67	0.066872					132	52	4	0	0	0	0.090732	3	14984	14934;14984;15028		47.732	14.287	1	1555800			25597	2244	17017	17179	34381;34382;34383	34382					0.04045337877732891
YPEKIQASL	9	Unmodified	_YPEKIQASL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.786865234375	2	524.787307	1047.56006	-0.24275	-0.00012739	-0.39989	-0.00020986	-0.64263	-0.00033724	524.7869903119781	45.458	0.717	45.458	45.238	45.955	0					53	18	4	0	0	0	0.0043442	1	8961	8961		96.936	54.98	1	653970			25598	2198	17018	17180	34384	34384					0.038183232404207956
YPEKIQASL	9	Unmodified	_YPEKIQASL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7872314453125	2	524.787307	1047.56006	-0.061985	-3.2529E-05	-0.21587	-0.00011328	-0.27785	-0.00014581	524.7870752923471	45.359	0.57538	45.447	45.237	45.813	0.08754					54	22	4	0	0	0	0.0043442	2	8797	8751;8797		96.936	54.98	1	518340			25599	2198	17018	17180	34385;34386	34386					0.038183232404207956
YPENGVVQM	9	Oxidation (M)	_YPENGVVQM(Oxidation (M))_		YPENGVVQM(1)		YPENGVVQM(100)	0	0	1		chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1	chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7395629882812	2	526.739499	1051.46445	-0.1701	-8.9596E-05	0.25329	0.00013342	0.083196	4.3823E-05	526.739614725196	40.092	0.78694	40.092	39.806	40.593	0					50	27	2	0	0	0	0.0040275	2	7320	7320;7362		103.35	25.369	1	582600			25600	158	17019	17181	34387;34388	34387		4			-0.059227729421081676
YPENGVVQM	9	Oxidation (M)	_YPENGVVQM(Oxidation (M))_		YPENGVVQM(1)		YPENGVVQM(89)	0	0	1		chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1	chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7395629882812	2	526.739499	1051.46445	-0.099299	-5.2305E-05	0.30188	0.00015901	0.20258	0.00010671	526.7396344809949	40.017	0.81867	40.105	39.837	40.656	0.088562					60	31	2	0	0	0	0.0045534	1	7173	7173		88.954	10.97	1	515570			25601	158	17019	17181	34389	34389		4			-0.059227729421081676
YPEPANDLR	9	Unmodified	_YPEPANDLR_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.252197265625	2	537.764363	1073.51417	0.22228	0.00011953	-0.27843	-0.00014973	-0.056152	-3.0196E-05	537.7640479915369	51.605	0.59052	51.605	51.295	51.886	0					55	19	4	0	0	0	0.25051	1	10717	10717		7.9102	3.1541	1	529790	+		25602	10175	17020	17182	34390	34390					-0.019643219418185254
YPEPANDLR	9	Unmodified	_YPEPANDLR_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7647094726562	2	537.764363	1073.51417	0.46955	0.00025251	-0.48659	-0.00026167	-0.017038	-9.1627E-06	537.7640202258967	51.541	0.51909	51.61	51.285	51.804	0.069874					62	19	4	0	0	0	0.25209	1	10613	10613		12.532	1.7076	1	425090	+		25603	10175	17020	17182	34391	34391					-0.019643219418185254
YPEPANDLR	9	Unmodified	_YPEPANDLR_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2517700195312	2	537.764363	1073.51417	0.46955	0.00025251	-0.48659	-0.00026167	-0.017038	-9.1627E-06	537.7640202258967	51.541	0.51909	51.61	51.285	51.804	0.069874					62	19	4	0	0	0	0.25051	1	10573	10573		7.9102	3.1541	1	425090	+		25604	10175	17020	17182	34392	34392					-0.019643219418185254
YPEPFLIKL	9	Unmodified	_YPEPFLIKL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.3262329101562	2	560.326068	1118.63758	0.4878	0.00027332	-0.014797	-8.2911E-06	0.473	0.00026503	560.3259647878335	75.39	0.6609	75.39	75.148	75.809	0					71	27	4	0	0	0	0.0042703	2	18030	18030;18075		99.755	53.734	1	2860400			25605	3938	17021	17183	34393;34394	34393					0.08300961176610144
YPEPFLIKL	9	Unmodified	_YPEPFLIKL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.3260498046875	2	560.326068	1118.63758	0.49734	0.00027867	-0.020005	-1.1209E-05	0.47734	0.00026746	560.325960091614	75.355	0.59689	75.399	75.169	75.766	0.044037					65	23	4	0	0	0	0.0028323	3	17861	17861;17913;17994		110.67	55.901	1	3284200			25606	3938	17021	17183	34395;34396;34397	34395					0.08300961176610144
YPEPLGERL	9	Unmodified	_YPEPLGERL_					0	0	0		ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	ENSG00000108094|ENST00000374749|CUL2	ENSG00000108094|ENST00000374749|CUL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.7645874023438	2	537.284931	1072.55531	0.22471	0.00012073	-0.64749	-0.00034789	-0.42278	-0.00022715	537.28467422255	51.422	0.67592	51.422	51.006	51.682	0					56	22	3	0	0	0	0.17305	1	10784	10784		31.268	31.268	1	252240			25607	1581	17022	17184	34398	34398					0.021934390976639406
YPEPLGERL	9	Unmodified	_YPEPLGERL_					0	0	0		ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	ENSG00000108094|ENST00000374749|CUL2	ENSG00000108094|ENST00000374749|CUL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7647094726562	2	537.284931	1072.55531	0.48707	0.0002617	-0.55257	-0.00029689	-0.065499	-3.5191E-05	537.2847320857991	51.368	0.71731	51.438	51.021	51.738	0.069874					62	27	3	0	0	0	0.16392	1	10613	10613		32.786	13.529	1	219020			25608	1581	17022	17184	34399	34399					0.021934390976639406
YPEQEIVNL	9	Unmodified	_YPEQEIVNL_					0	0	0		ENST00000550858.1_1_12:42681476-42682067:+|nuORF;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2393798828125	2	552.782222	1103.54989	0.86872	0.00048022	-1.3579	-0.00075064	-0.48921	-0.00027043	552.7813296553121	66.184	0.61884	66.184	65.988	66.607	0					44	22	3	0	0	0	0.19558	1	15238	15238		26.268	3.1197	1	330290			25609	7098	17023	17185	34400	34400					0.0022571551519376953
YPEQEIVNL	9	Unmodified	_YPEQEIVNL_					0	0	0		ENST00000550858.1_1_12:42681476-42682067:+|nuORF;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7960205078125	2	552.782222	1103.54989	0.76917	0.00042518	-1.2007	-0.00066372	-0.43151	-0.00023853	552.7814648025852	66.149	0.52634	66.216	66.055	66.581	0.066872					42	19	3	0	0	0	0.19398	1	15118	15118		19.257	1.1106	1	286860			25610	7098	17023	17185	34401	34401					0.0022571551519376953
YPEQKVVTV	9	Unmodified	_YPEQKVVTV_					0	0	0		ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	531.795166015625	2	531.795132	1061.57571	-0.41301	-0.00021964	0.0027661	1.471E-06	-0.41024	-0.00021816	531.795063274068	41.144	0.79935	41.144	40.911	41.711	0					75	29	4	0	0	0	0.02143	1	7605	7605		57.249	28.168	1	484450			25611	1696	17024	17186	34402	34402					0.04738609757464474
YPEQKVVTV	9	Unmodified	_YPEQKVVTV_					0	0	0		ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7421875	2	531.795132	1061.57571	-0.16354	-8.6969E-05	-0.10448	-5.5561E-05	-0.26802	-0.00014253	531.794931891314	41.06	0.66809	41.149	40.928	41.596	0.089645					64	25	4	0	0	0	0.012002	1	7477	7477		80.676	46.274	1	413610			25612	1696	17024	17186	34403	34403					0.04738609757464474
YPERCDIAL	9	Unmodified	_YPERCDIAL_					0	0	0			REV__ENSG00000233436|ENST00000422652|BTBD18	REV__ENSG00000233436|ENST00000422652|BTBD18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2642211914062	2	540.263142	1078.51173	0.61888	0.00033436	-0.014431	-7.7963E-06	0.60445	0.00032656	540.263149975481	47.961	0.90915	48.041	47.756	48.665	0.080029					56	31	3	0	0	0	0.30005	1	9578	9578		6.7232	0	1	116620	+		25613	11044	17025	17187	34404	34404					-0.024384936711385308
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(110)M(110)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7227172851562	2	559.722658	1117.43076	-0.19809	-0.00011088	0.13885	7.772E-05	-0.059238	-3.3157E-05	559.7227452370937	40.523	1.34	40.523	40.18	41.52	0					122	47	4	0	0	0	0.0025191	3	7457	7414;7457;7505		112.59	68.735	1	607490			25614	3845	17026	17188	34405;34406;34407	34406		239;240			-0.12325562496152997
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(71)M(71)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.72216796875	2	559.722658	1117.43076	-0.40594	-0.00022721	0.77821	0.00043558	0.37227	0.00020837	559.7224986060526	42.208	1.6583	42.208	41.433	43.091	0					166	58	4	0	0	0	0.0087214	2	7894	7894;7942		71.134	47.113	1	305880			25615	3845	17026	17188	34408;34409	34408		239;240			-0.12325562496152997
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(61)M(61)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.72216796875	2	559.722658	1117.43076	-0.049534	-2.7726E-05	-0.29607	-0.00016572	-0.34561	-0.00019345	559.7224207088198	43.666	1.9628	43.666	42.946	44.909	0					157	69	3	0	0	0	0.015682	4	8416	8316;8416;8469;8522		61.357	43.211	1	223520			25616	3845	17026	17188	34410;34411;34412;34413	34411		239;240			-0.12325562496152997
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(48)M(48)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.722900390625	2	559.722658	1117.43076	0.13097	7.3309E-05	-0.16869	-9.4419E-05	-0.037715	-2.111E-05	559.7225584020837	46.502	1.0762	46.502	45.474	46.55	0					54	39	2	0	0	0	0.033885	1	9233	9233		48.346	30.211	1	286790			25617	3845	17026	17188	34414	34414		239;240			-0.12325562496152997
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(82)M(82)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7227172851562	2	559.722658	1117.43076	0.0147	8.2279E-06	-0.27799	-0.0001556	-0.26329	-0.00014737	559.7226765284939	40.441	1.3186	40.531	40.237	41.555	0.089645					122	50	5	0	0	0	0.0053304	3	7307	7259;7307;7351		81.613	50.977	1	492470			25618	3845	17026	17188	34415;34416;34417	34416		239;240			-0.12325562496152997
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(71)M(71)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7220458984375	2	559.722658	1117.43076	-0.15176	-8.4946E-05	0.63111	0.00035325	0.47935	0.0002683	559.722519085538	42.123	1.5821	42.213	41.556	43.138	0.089764					171	61	4	0	0	0	0.0087214	2	7724	7724;7769		71.134	47.113	1	253220			25619	3845	17026	17188	34418;34419	34418		239;240			-0.12325562496152997
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(64)M(64)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7225341796875	2	559.722658	1117.43076	0.13272	7.4288E-05	-0.32781	-0.00018348	-0.19509	-0.0001092	559.7224305006185	43.474	1.8	43.563	43.137	44.937	0.088924					134	64	3	0	0	0	0.011655	3	8180	8180;8258;8307		64.236	44.979	1	206990			25620	3845	17026	17188	34420;34421;34422	34420		239;240			-0.12325562496152997
YPESESIMM	9	Oxidation (M)	_YPESESIMM(Oxidation (M))_		YPESESIM(0.009)M(0.991)		YPESESIM(-20)M(20)	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.7249145507812	2	551.7252	1101.43585	0.27346	0.00015088	0.089931	4.9617E-05	0.36339	0.00020049	551.7251599115217	51.863	1.1412	51.863	51.386	52.527	0					68	39	2	0	0	0	0.05573	2	10811	10811;10863		42.095	23.96	2	150380			25621	3845	17026	17189	34423;34424	34423		239;240			-0.11081258633566904
YPESESIMM	9	Oxidation (M)	_YPESESIMM(Oxidation (M))_		YPESESIM(0.009)M(0.991)		YPESESIM(-20)M(20)	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.7257080078125	2	551.7252	1101.43585	0.41929	0.00023133	0.16738	9.2348E-05	0.58667	0.00032368	551.7252479376716	51.824	0.81876	51.891	51.448	52.267	0.067173					53	29	2	0	0	0	0.05573	1	10747	10747		42.095	23.96	2	134390			25622	3845	17026	17189	34425	34425		239;240			-0.11081258633566904
YPETLGRLLIL	11	Unmodified	_YPETLGRLLIL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.3873291015625	2	644.387188	1286.75982	0.36498	0.00023519	0.010015	6.4533E-06	0.37499	0.00024164	644.38707186019	79.259	0.84904	79.259	79.047	79.897	0					69	29	4	0	0	0	0.020856	3	19241	19197;19241;19286		101.54	77.754	1	929420			25623	2436	17027	17190	34426;34427;34428	34427					0.12791378188217095
YPETLGRLLIL	11	Unmodified	_YPETLGRLLIL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3883056640625	2	644.387188	1286.75982	0.12896	8.3099E-05	0.23658	0.00015245	0.36553	0.00023555	644.3872268105341	79.242	0.60609	79.269	79.042	79.648	0.026428					58	21	4	0	0	0	0.0044416	3	19041	19041;19088;19130		101.54	78.807	1	995960			25624	2436	17027	17190	34429;34430;34431	34429					0.12791378188217095
YPETLVNLIVL	11	Unmodified	_YPETLVNLIVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3740234375	2	637.373746	1272.73294	0.29951	0.0001909	0.076932	4.9034E-05	0.37644	0.00023994	637.3737768423523	100.51	1.2586	100.51	100.26	101.51	0					255	75	5	0	0	0	0.015967	10	25725	25641;25684;25725;25765;25801;25838;25882;25930;25974;25989		69.338	39.498	1	3590900			25625	1482	17028	17191	34432;34433;34434;34435;34436;34437;34438;34439;34440;34441	34434					0.1074826957701589
YPETLVNLIVL	11	Unmodified	_YPETLVNLIVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3731689453125	2	637.373746	1272.73294	0.22883	0.00014585	-0.38869	-0.00024774	-0.15986	-0.00010189	637.3735197745586	101.65	0.35303	101.65	101.51	101.87	0					28	25	2	0	0	0	0.38777	1	26028	26028		7.1017	1.8048	1	87438			25626	1482	17028	17191	34442	34442					0.1074826957701589
YPETLVNLIVL	11	Unmodified	_YPETLVNLIVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3739624023438	2	637.373746	1272.73294	0.42595	0.00027149	-0.14317	-9.1254E-05	0.28278	0.00018023	637.3735929449381	100.47	1.266	100.51	100.24	101.51	0.042839					235	76	5	0	0	0	0.015967	10	25565	25524;25565;25604;25642;25683;25722;25726;25765;25772;25823		69.338	39.498	1	4497300			25627	1482	17028	17191	34443;34444;34445;34446;34447;34448;34449;34450;34451;34452	34444					0.1074826957701589
YPEVALHF	8	Unmodified	_YPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.25140380859375	2	488.25036	974.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.353	1	63.424	62.924	63.924	0.071018								0	0	0	0.38822	1	14240	14240		4.756	0.42677	1				25628	2175	17029	17192	34453	34453					-0.0020960013125659316
YPEVEIFRTL	10	Unmodified	_YPEVEIFRTL_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;nc|ENSG00000165671|Q96L73-3|NSD1	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8395385742188	2	633.840071	1265.66559	0.088301	5.5969E-05	-0.38113	-0.00024157	-0.29283	-0.0001856	633.8395453108528	71.785	0.66266	71.785	71.474	72.137	0					47	23	3	0	0	0	0.0073827	2	16963	16915;16963		78.61	55.874	1	444410			25629	4099	17030	17193	34454;34455	34455					0.04338239366029484
YPEVEIFRTL	10	Unmodified	_YPEVEIFRTL_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;nc|ENSG00000165671|Q96L73-3|NSD1	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.8397216796875	2	633.840071	1265.66559	0.1786	0.0001132	-0.17153	-0.00010872	0.0070671	4.4794E-06	633.8397587051132	71.722	0.54319	71.781	71.464	72.007	0.058578					43	19	3	0	0	0	0.02436	2	16793	16746;16793		64.692	38.598	1	446190			25630	4099	17030	17193	34456;34457	34457					0.04338239366029484
YPEVRIVLM	9	Oxidation (M)	_YPEVRIVLM(Oxidation (M))_		YPEVRIVLM(1)		YPEVRIVLM(96)	0	0	1		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.3128662109375	2	568.312635	1134.61072	0.41663	0.00023678	-0.52773	-0.00029991	-0.11109	-6.3136E-05	568.3124945162969	60.462	1.4932	60.462	59.895	61.389	0					168	53	5	0	0	0	0.0043591	2	13485	13485;13533		96.367	67.88	1	1445700			25631	2748	17031	17194	34458;34459	34458		176			0.04879529293748419
YPEVRIVLM	9	Oxidation (M)	_YPEVRIVLM(Oxidation (M))_		YPEVRIVLM(1)		YPEVRIVLM(96)	0	0	1		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3128051757812	2	568.312635	1134.61072	0.17458	9.9215E-05	-0.18572	-0.00010555	-0.011141	-6.3317E-06	568.3126423974044	60.336	1.5224	60.41	59.913	61.435	0.073418					152	53	5	0	0	0	0.0043591	3	13298	13298;13345;13387		96.367	67.88	1	1161400			25632	2748	17031	17194	34460;34461;34462	34460		176			0.04879529293748419
YPEVRIVLM	9	Unmodified	_YPEVRIVLM_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.3156127929688	2	560.315177	1118.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.847	1	68.847	68.347	69.347	0								0	0	0	0.082718	1	16055	16055		38.615	20.468	1				25633	2748	17031	17195	34463	34463					0.061238331563799875
YPEVRIVLM	9	Unmodified	_YPEVRIVLM_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7579345703125	2	560.315177	1118.6158	0.3908	0.00021897	3.3727	0.0018898	3.7635	0.0021088	560.3151794424804	68.761	0.58306	68.823	68.559	69.142	0.062126					77	21	5	0	0	0	0.16724	1	15866	15866		33.445	16.503	1	429520			25634	2748	17031	17195	34464	34464					0.061238331563799875
YPEYLITF	8	Unmodified	_YPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3037719726562	2	523.265676	1044.5168	0.64037	0.00033509	-1.3092	-0.00068507	-0.66885	-0.00034999	523.2648674808319	85.166	0.41278	85.166	84.898	85.311	0					24	13	2	0	0	0	0.33473	1	21035	21035		30.225	2.596	1	138210			25635	4532	17032	17196	34465	34465					-0.0036786653686249338
YPEYLITF	8	Unmodified	_YPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3038330078125	2	523.265676	1044.5168	0.56325	0.00029473	-0.93505	-0.00048928	-0.3718	-0.00019455	523.2650061823128	85.116	0.41763	85.139	84.895	85.312	0.023132					25	15	2	0	0	0	0.34579	1	20852	20852		23.148	3.8914	1	117660			25636	4532	17032	17196	34466	34466					-0.0036786653686249338
YPFDGHNEGTL	11	Unmodified	_YPFDGHNEGTL_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.2781372070312	2	625.277835	1248.54112	-0.049781	-3.1127E-05	0.51082	0.00031941	0.46104	0.00028828	625.2779992704949	50.633	0.42624	50.633	50.46	50.886	0					31	14	3	0	0	0	0.12206	1	10496	10496		42.312	15.429	1	140310			25637	2879	17033	17197	34467	34467					-0.07321258121282881
YPFDGHNEGTL	11	Unmodified	_YPFDGHNEGTL_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.2775268554688	2	625.277835	1248.54112	0.22485	0.0001406	0.035333	2.2093E-05	0.26019	0.00016269	625.2780698456274	50.519	0.41273	50.592	50.444	50.857	0.07312					21	14	2	0	0	0	0.40693	1	10378	10378		2.7352	1.4057	1	136290			25638	2879	17033	17197	34468	34468					-0.07321258121282881
YPFELEKDL	9	Unmodified	_YPFELEKDL_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.2922973632812	2	577.292422	1152.57029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.441	1	64.441	63.941	64.941	0								0	0	0	0.18462	1	14714	14714		20.415	10.341	1				25639	4750	17034	17198	34469	34469					0.00010886175004998222
YPFELEKDLHL	11	Unmodified	_YPFELEKDLHL_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.5781555175781	3	468.578365	1402.71327	0.52668	0.00024679	-0.25671	-0.00012029	0.26997	0.0001265	468.9125173350232	67.089	0.62019	67.089	66.84	67.46	0					31	22	3	0	0	0	0.36981	1	15534	15534		10.016	1.572	1	205910			25640	4750	17035	17199	34470	34470					0.028018935662430522
YPFELEKDLHL	11	Unmodified	_YPFELEKDLHL_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	468.578365	1402.71327	0.48065	0.00022522	-0.63707	-0.00029852	-0.15643	-7.3297E-05	468.57815676686783	67.078	0.45609	67.143	66.952	67.408	0.065071	0.026912	-0.00013822	NaN	10.016	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180960			25641	4750	17035	17199							0.028018935662430522
YPFESAEAQL	10	Unmodified	_YPFESAEAQL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7720947265625	2	577.771854	1153.52915	0.78986	0.00045636	-0.11673	-6.7445E-05	0.67313	0.00038891	577.7716790830681	66.236	0.88213	66.236	65.879	66.761	0					74	33	3	0	0	0	0.012609	3	15249	15198;15249;15299		74.2	46.571	1	592830			25642	4206	17036	17200	34471;34472;34473	34472					-0.04146874864477468
YPFESAEAQL	10	Unmodified	_YPFESAEAQL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7719116210938	2	577.771854	1153.52915	0.65884	0.00038066	-0.0050296	-2.906E-06	0.65381	0.00037775	577.7716803753146	66.189	0.71633	66.255	65.916	66.632	0.066864					68	26	3	0	0	0	0.017192	3	15081	15036;15081;15133		70.332	48.795	1	426390			25643	4206	17036	17200	34474;34475;34476	34475					-0.04146874864477468
YPFESAEAQLL	11	Unmodified	_YPFESAEAQLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3138427734375	2	634.313886	1266.61322	0.16268	0.00010319	0.4894	0.00031044	0.65209	0.00041363	634.3136465484777	77.972	0.55373	77.972	77.685	78.238	0					39	18	3	0	0	0	0.36864	1	18860	18860		10.151	2.8613	1	141860			25644	4206	17037	17201	34477	34477					-0.009423437675877722
YPFIGDVHSL	10	Unmodified	_YPFIGDVHSL_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2943725585938	2	574.292756	1146.57096	0.68701	0.00039454	0.12835	7.3712E-05	0.81536	0.00046826	574.2927581659814	67.413	0.8932	67.478	67.101	67.994	0.065071					54	30	2	0	0	0	0.020358	1	15447	15447		74.929	34.972	1	287130			25645	2525	17038	17202	34478	34478					0.003537256147183143
YPFIIDAHL	9	Unmodified	_YPFIIDAHL_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7925415039062	2	544.792392	1087.57023	0.031385	1.7098E-05	0.65342	0.00035598	0.68481	0.00037308	544.7926148522561	72.839	1.0852	72.839	72.631	73.716	0					83	38	4	0	0	0	1.1297E-12	3	17299	17254;17299;17344		179.23	118.84	1	1649600			25646	7508	17039	17203	34479;34480;34481	34480					0.029949309656331025
YPFIIDAHL	9	Unmodified	_YPFIIDAHL_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7926025390625	2	544.792392	1087.57023	0.15498	8.4431E-05	0.50918	0.00027739	0.66415	0.00036183	544.7925290331295	72.814	0.67097	72.866	72.623	73.294	0.052574					69	22	4	0	0	0	1.1297E-12	3	17117	17072;17117;17169		179.23	118.84	1	1749000			25647	7508	17039	17203	34482;34483;34484	34483					0.029949309656331025
YPFKNDEVLP	10	Unmodified	_YPFKNDEVLP_					0	0	0		ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	611.310546875	2	611.311146	1220.60774	0.17173	0.00010498	0.18358	0.00011222	0.35531	0.0002172	611.3110581031154	56.195	0.79996	56.195	55.948	56.748	0					68	29	3	0	0	0	0.28859	2	12211	12211;12259		23.79	11.549	1	524890			25648	3955	17040	17204	34485;34486	34485					0.006259774406089491
YPFKNDEVLP	10	Unmodified	_YPFKNDEVLP_					0	0	0		ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.3108520507812	2	611.311146	1220.60774	0.17972	0.00010986	0.061814	3.7788E-05	0.24153	0.00014765	611.3109548782363	56.237	0.78751	56.304	55.948	56.735	0.066448					76	29	4	0	0	0	0.33926	2	12088	12028;12088		18.373	9.6277	1	446460			25649	3955	17040	17204	34487;34488	34488					0.006259774406089491
YPFLCLLDE	9	Unmodified	_YPFLCLLDE_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.77001953125	2	556.770268	1111.52598	-0.18662	-0.0001039	-0.030562	-1.7016E-05	-0.21718	-0.00012092	556.7701810970314	19.175	0.61939	19.175	19.025	19.644	0					150	71	4	0	0	0	0.35102	1	1365	1365		0	0	1	92192			25650	1136	17041	17205	34489	34489					-0.02531841242853261
YPFLKEVYF	9	Unmodified	_YPFLKEVYF_					0	0	0		tr|U7SNR7|U7SNR7_FUSNU1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxrPE=3SV=1	tr|U7SNR7|U7SNR7_FUSNU1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxrPE=3SV=1	tr|U7SNR7|U7SNR7_FUSNU1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxrPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.2981567382812	2	603.3157	1204.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.484	1	94.523	94.023	95.023	0.038086								0	0	0	0.25992	1	23709	23709		7.2892	0.56607	1				25651	13518	17042	17206	34490	34490					0.022723707969362295
YPFLLVGDLM	10	Oxidation (M)	_YPFLLVGDLM(Oxidation (M))_		YPFLLVGDLM(1)		YPFLLVGDLM(130)	0	0	1		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.3074340820312	2	592.307018	1182.59948	0.41529	0.00024598	0.66067	0.00039132	1.076	0.0006373	592.307103468254	94.396	1.5038	94.396	93.963	95.467	0					166	67	4	0	0	0	2.838E-05	6	23838	23750;23789;23838;23879;23926;23984		125.62	102.89	1	1380300			25652	2849	17043	17207	34491;34492;34493;34494;34495;34496	34493		184			0.015487071996176383
YPFLLVGDLM	10	Oxidation (M)	_YPFLLVGDLM(Oxidation (M))_		YPFLLVGDLM(1)		YPFLLVGDLM(150)	0	0	1		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.307373046875	2	592.307018	1182.59948	0.34999	0.0002073	0.64285	0.00038077	0.99284	0.00058806	592.3071763605994	94.291	1.3912	94.33	93.972	95.363	0.038094					187	60	4	0	0	0	9.4804E-08	8	23630	23580;23588;23630;23676;23719;23766;23813;23860		154.46	129.06	1	1364900			25653	2849	17043	17207	34497;34498;34499;34500;34501;34502;34503;34504	34499		184			0.015487071996176383
YPFLLVGDLM	10	Oxidation (M)	_YPFLLVGDLM(Oxidation (M))_		YPFLLVGDLM(1)		YPFLLVGDLM(78)	0	0	1		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.3073120117188	2	592.307018	1182.59948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.458	1	92.494	91.994	92.994	0.03653								0	0	0	0.01456	1	23091	23091		78.149	51.266	1				25654	2849	17043	17207	34505	34505		184			0.015487071996176383
YPFLLVGDLM	10	Unmodified	_YPFLLVGDLM_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3096923828125	2	584.309561	1166.60457	0.48801	0.00028515	-0.059177	-3.4577E-05	0.42883	0.00025057	584.3094676613636	102.05	0.54764	102.05	101.86	102.4	0					90	39	3	0	0	0	0.16299	1	26148	26148		37.974	24.932	1	331350			25655	2849	17043	17208	34506	34506					0.027930110622492066
YPFLLVGDLM	10	Unmodified	_YPFLLVGDLM_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.310791015625	2	584.309561	1166.60457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.57	1	102.57	102.07	103.07	0								0	0	0	0.33443	1	26326	26326		6.7232	2.7788	1				25656	2849	17043	17208	34507	34507					0.027930110622492066
YPFLLVGDLM	10	Unmodified	_YPFLLVGDLM_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.309326171875	2	584.309561	1166.60457	0.75114	0.0004389	-0.45238	-0.00026433	0.29876	0.00017457	584.3093058268161	102	0.65713	102.04	101.85	102.51	0.042656					103	52	3	0	0	0	0.093158	1	25970	25970		46.021	33.78	1	237000			25657	2849	17043	17208	34508	34508					0.027930110622492066
YPFPDGILDVI	11	Unmodified	_YPFPDGILDVI_					0	0	0		nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8;ENSG00000123600|ENST00000375258|METTL8;ENST00000428182.2_1_12:15408356-15408710:-|nuORF;ENST00000438609.5_1_2:172180771-172195744:-|nuORF	nc|ENSG00000123600|Q9H825-2|METTL8	nc|ENSG00000123600|Q9H825-2|METTL8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8284301757812	2	624.829172	1247.64379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.31	1	103.35	102.85	103.85	0.03791								0	0	0	0.32823	1	26382	26382		4.897	0.36815	1				25658	2226	17044	17209	34509	34509					0.029874346174665334
YPFPVPPLL	9	Unmodified	_YPFPVPPLL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.802490234375	2	521.802229	1041.5899	0.44501	0.00023221	0.17555	9.1604E-05	0.62056	0.00032381	521.8023880969057	96.827	0.52469	96.827	96.552	97.077	0					54	25	3	0	0	0	0.18003	1	24577	24577		20.871	8.3397	1	218270			25659	2247	17045	17210	34510	34510					0.07077306976430009
YPFPVPPLL	9	Unmodified	_YPFPVPPLL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.8021850585938	2	521.802229	1041.5899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.723	1	96.763	96.263	97.263	0.039772								0	0	0	0.22377	1	24394	24394		14.582	5.2343	1				25660	2247	17045	17210	34511	34511					0.07077306976430009
YPFPVPPLL	9	Unmodified	_YPFPVPPLL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.8019409179688	2	521.802229	1041.5899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.93	1	96.97	96.47	97.47	0.039772								0	0	0	0.22377	1	24458	24458		14.582	5.8363	1				25661	2247	17045	17210	34512	34512					0.07077306976430009
YPFPVPPLL	9	Unmodified	_YPFPVPPLL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.8015747070312	2	521.802229	1041.5899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.042	1	97.083	96.583	97.583	0.040855								0	0	0	0.2699	1	24492	24492		5.2307	0	1				25662	2247	17045	17210	34513	34513					0.07077306976430009
YPFSMCLFF	9	Unmodified	_YPFSMCLFF_					0	0	0		ENST00000242719.3_1_1:51738308-51738467:+|nuORF	ENST00000242719.3_1_1:51738308-51738467:+|nuORF	ENST00000242719.3_1_1:51738308-51738467:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7560424804688	2	577.756107	1153.49766	0.4419	0.00025531	-2.6801	-0.0015484	-2.2382	-0.0012931	577.75457933222	71.31	0.34424	71.31	71.158	71.502	0					24	11	3	0	0	0	0.29105	1	16850	16850		7.9102	0.62092	1	157900			25663	5826	17046	17211	34514	34514					-0.07294862423782433
YPFSSSNDEEL	11	Unmodified	_YPFSSSNDEEL_					0	0	0		nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion	nc|ENSG00000158092|P16333-2|NCK1;NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	644.2717895507812	2	644.272415	1286.53028	0.33364	0.00021496	-0.045516	-2.9325E-05	0.28812	0.00018563	644.272385985623	61.084	0.66858	61.084	60.779	61.447	0					57	23	3	0	0	0	0.052232	2	13652	13652;13701		57.108	34.45	1	532050			25664	3678;7645	17047	17212	34515;34516	34515					-0.10152705286213859
YPFSSSNDEEL	11	Unmodified	_YPFSSSNDEEL_					0	0	0		nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion	nc|ENSG00000158092|P16333-2|NCK1;NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.2724609375	2	644.272415	1286.53028	0.148	9.5354E-05	0.26283	0.00016933	0.41083	0.00026469	644.2726067602795	60.938	0.59382	61.012	60.794	61.388	0.073421					50	19	3	0	0	0	0.044245	2	13495	13495;13544		59.052	31.424	1	523490			25665	3678;7645	17047	17212	34517;34518	34517					-0.10152705286213859
YPGPGGPW	8	Unmodified	_YPGPGGPW_					0	0	0			REV__ENST00000389817.7_1_11:17417252-17419904:-|nuORF	REV__ENST00000389817.7_1_11:17417252-17419904:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	415.695068359375	2	415.695221	829.375889	0.20473	8.5104E-05	0.10837	4.5048E-05	0.3131	0.00013015	415.6951228252856	103.53	0.36309	103.57	103.43	103.79	0.03791					60	36	2	0	0	0	0.54081	1	26445	26445		0.79363	0	1	112420	+		25666	11687	17048	17213	34519	34519					-0.04562400399629496
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2530517578125	2	490.253434	978.492316	0.10525	5.1601E-05	-0.096486	-4.7303E-05	0.0087674	4.2982E-06	490.2533376465238	39.007	1.2408	39.007	38.625	39.866	0					76	46	2	0	0	0	0.030375	3	6957	6957;7005;7053		50.855	28.907	1	495790			25667	1834	17049	17214	34520;34521;34522	34520					0.002209181002854166
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.2534484863281	2	490.253434	978.492316	0.1975	9.6826E-05	0.040021	1.962E-05	0.23752	0.00011645	490.25338105272954	38.95	1.1322	39.037	38.682	39.814	0.08688					92	44	4	0	0	0	0.0088567	3	6841	6841;6882;6929		70.716	38.599	1	418360			25668	1834	17049	17214	34523;34524;34525	34523					0.002209181002854166
YPGTHSWG	8	Unmodified	_YPGTHSWG_					0	0	0		ENST00000588831.5_1_19:36427895-36428069:+|nuORF	ENST00000588831.5_1_19:36427895-36428069:+|nuORF	ENST00000588831.5_1_19:36427895-36428069:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	452.70135498046875	2	452.701035	903.387516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.64	1	82.661	82.161	83.161	0.021744								0	0	0	0.38822	1	20105	20105		2.8892	0	1				25669	7252	17050	17215	34526	34526					-0.06804203376270834
YPHAMKHYT	9	Unmodified	_YPHAMKHYT_					0	0	0		ENST00000394563.4_1_X:85340081-85340624:-|nuORF	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7493896484375	2	574.271301	1146.52805	0.80465	0.00046209	-2.6922	-0.0015461	-1.8876	-0.001084	575.2750732635935	80.81	0.46762	80.81	80.646	81.114	0					30	15	3	0	0	0	0.25845	1	19672	19672		2.0598	0	1	52983			25670	6328	17051	17216	34527	34527					-0.039353677143481036
YPHFPEFFL	9	Unmodified	_YPHFPEFFL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.2945556640625	2	598.792392	1195.57023	0.41408	0.00024795	-0.031699	-1.8981E-05	0.38238	0.00022897	598.7920505102675	82.87	0.66491	82.87	82.563	83.228	0					42	22	3	0	0	0	0.092418	1	20361	20361		34.102	20.196	1	402310			25671	2135	17052	17217	34528	34528					-0.019730690343294555
YPHFPEFFL	9	Unmodified	_YPHFPEFFL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.7921752929688	2	598.792392	1195.57023	0.23462	0.00014049	0.058113	3.4797E-05	0.29273	0.00017529	598.7920375879613	82.845	0.82261	82.867	82.617	83.44	0.021744					38	28	2	0	0	0	0.12809	1	20202	20202		26.884	15.243	1	429850			25672	2135	17052	17217	34529	34529					-0.019730690343294555
YPHPIPHPIP	10	Unmodified	_YPHPIPHPIP_					0	0	0			REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF	REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.8071899414062	2	584.319109	1166.62366	0.37862	0.00022124	-2.7495	-0.0016066	-2.3709	-0.0013854	584.317627411293	50.364	0.36006	50.364	50.129	50.489	0					17	12	2	0	0	0	0.31829	1	10371	10371		1.8442	0	1	72424	+		25673	11455	17053	17218	34530	34530					0.047017284681714955
YPHPIPHPIP	10	Unmodified	_YPHPIPHPIP_					0	0	0			REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF	REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	584.319109	1166.62366	0.60317	0.00035245	-3.596	-0.0021012	-2.9928	-0.0017487	584.3173047421769	50.238	0.37462	50.311	50.152	50.526	0.07312	-0.026565	-0.00036709	NaN	1.8442	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68487	+		25674	11455	17053	17218							0.047017284681714955
YPHRPQCGSF	10	Unmodified	_YPHRPQCGSF_					0	0	0			REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.7984619140625	2	596.271832	1190.52911	0.023316	1.3903E-05	2.0798	0.0012401	2.1031	0.001254	596.7742898262236	91.379	0.10323	91.415	91.361	91.464	0.035446					5	3	2	0	0	0	0.31773	1	22765	22765		4.897	0	1	29510	+		25675	11382	17054	17219	34531	34531					-0.05853153345492501
YPHWPARIDEM	11	Unmodified	_YPHWPARIDEM_					0	0	0		ENST00000495212.1_1_1:156715087-156721275:-|nuORF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENSG00000143321|ENST00000357325|HDGF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	472.2237854003906	3	472.223928	1413.64996	0.27919	0.00013184	-0.35045	-0.00016549	-0.07126	-3.365E-05	472.2238027073929	55.04	0.44839	55.105	54.887	55.335	0.065128					40	17	3	0	0	0	0.39319	1	11708	11708		5.8681	0.46543	1	147750			25676	3145	17055	17220	34532	34532					-0.04032370422646636
YPIAEEKTQL	10	Unmodified	_YPIAEEKTQL_					0	0	0		nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2	nc|ENSG00000081985|Q99665-3|IL12RB2	nc|ENSG00000081985|Q99665-3|IL12RB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.31640625	2	596.316428	1190.6183	-0.23203	-0.00013836	0.30053	0.00017921	0.068501	4.0848E-05	596.3165024855525	43.984	0.31805	43.984	43.829	44.147	0					22	10	3	0	0	0	0.40338	1	8513	8513		11.518	6.221	1	77101			25677	915	17056	17221	34533	34533					0.03061960095055838
YPIAVLIDEL	10	Unmodified	_YPIAVLIDEL_					0	0	0		ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENST00000468280.5_1_19:52693376-52714746:+|nuORF	ENST00000468280.5_1_19:52693376-52714746:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.3262939453125	2	573.326265	1144.63798	0.27007	0.00015484	-0.12254	-7.0253E-05	0.14754	8.4587E-05	573.3260790522764	95.973	0.73847	95.973	95.56	96.299	0					84	36	3	0	0	0	0.00052004	4	24325	24244;24288;24325;24367		96.285	61.883	1	918830			25678	1477	17057	17222	34534;34535;34536;34537	34536					0.0714433610580727
YPIAVLIDEL	10	Unmodified	_YPIAVLIDEL_					0	0	0		ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENST00000468280.5_1_19:52693376-52714746:+|nuORF	ENST00000468280.5_1_19:52693376-52714746:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.3263549804688	2	573.326265	1144.63798	0.2956	0.00016947	-0.22229	-0.00012744	0.073305	4.2028E-05	573.3260364672315	95.863	0.8028	95.902	95.54	96.343	0.038872					94	41	4	0	0	0	0.00052004	3	24126	24067;24126;24171		96.285	61.883	1	733950			25679	1477	17057	17222	34538;34539;34540	34539					0.0714433610580727
YPIEKFISL	9	Unmodified	_YPIEKFISL_					0	0	0		ENST00000539508.5_1_9:13106966-13133978:-|nuORF;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13106966-13133978:-|nuORF	ENST00000539508.5_1_9:13106966-13133978:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.3154296875	2	555.3157	1108.61685	0.68757	0.00038182	-0.61382	-0.00034086	0.073757	4.0958E-05	555.3151349905235	70.285	0.4407	70.285	70.09	70.531	0					24	16	2	0	0	0	0.19307	1	16519	16519		19.362	1.2156	1	135290			25680	1547	17058	17223	34541	34541					0.06688370796950949
YPIIGLSFIS	10	Unmodified	_YPIIGLSFIS_					0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	555.3160400390625	2	555.3157	1108.61685	0.72156	0.0004007	-0.38081	-0.00021147	0.34076	0.00018923	555.3152148251248	70.302	0.41238	70.362	70.065	70.477	0.060562					23	16	2	0	0	0	0.42901	1	16329	16329		8.7454	1.1365	1	104540	+		25681	13298	17059	17224	34542	34542					0.06688370796950949
YPISLFFA	8	Unmodified	_YPISLFFA_					0	0	0			REV__ENSG00000136404|ENST00000322019|TM6SF1	REV__ENSG00000136404|ENST00000322019|TM6SF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	479.258056640625	2	479.257654	956.500755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.88	1	116.88	116.38	117.38	0								0	0	0	0.38822	1	29707	29707		0.79363	0	1		+		25682	9242	17060	17225	34543	34543					0.02076472016904063
YPIWAILF	8	Unmodified	_YPIWAILF_					0	0	0			REV__ENSG00000124818|ENST00000371211|OPN5	REV__ENSG00000124818|ENST00000371211|OPN5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.788330078125	2	511.789121	1021.56369	0.45472	0.00023272	-1.5068	-0.00077119	-1.0521	-0.00053846	511.7881598129926	64.848	1.0065	64.917	64.658	65.665	0.068916					54	38	2	0	0	0	0.41567	1	14738	14738		24.21	4.953	1	220580	+		25683	8964	17061	17226	34544	34544					0.0537703780494212
YPIWAILF	8	Unmodified	_YPIWAILF_					0	0	0			REV__ENSG00000124818|ENST00000371211|OPN5	REV__ENSG00000124818|ENST00000371211|OPN5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7877197265625	2	511.789121	1021.56369	0.45472	0.00023272	-1.5068	-0.00077119	-1.0521	-0.00053846	511.7881598129926	64.848	1.0065	64.917	64.658	65.665	0.068916					54	38	2	0	0	0	0.35256	1	14681	14681		17.087	2.5049	1	220580	+		25684	8964	17061	17226	34545	34545					0.0537703780494212
YPIYDVLQM	9	Oxidation (M)	_YPIYDVLQM(Oxidation (M))_		YPIYDVLQM(1)		YPIYDVLQM(48)	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000493271.1_1_2:96945134-96947649:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2809448242188	2	579.281	1156.54745	0.40869	0.00023674	0.0099594	5.7693E-06	0.41865	0.00024251	579.2811058609012	74.365	0.51885	74.365	74.171	74.69	0					32	18	2	0	0	0	0.03472	1	17740	17740		47.749	26.002	1	156340			25685	3192	17062	17227	34546	34546		209			-0.024564562141222268
YPIYDVLQM	9	Oxidation (M)	_YPIYDVLQM(Oxidation (M))_		YPIYDVLQM(1)		YPIYDVLQM(42)	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000493271.1_1_2:96945134-96947649:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.2814331054688	2	579.281	1156.54745	0.40859	0.00023669	0.77962	0.00045162	1.1882	0.00068831	579.2811972273039	76.648	0.69878	76.648	76.445	77.144	0					51	24	3	0	0	0	0.0569	1	18449	18449		41.84	21.386	1	161720			25686	3192	17062	17227	34547	34547		209			-0.024564562141222268
YPIYDVLQM	9	Oxidation (M)	_YPIYDVLQM(Oxidation (M))_		YPIYDVLQM(1)		YPIYDVLQM(56)	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000493271.1_1_2:96945134-96947649:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2813110351562	2	579.281	1156.54745	0.54555	0.00031603	-0.077506	-4.4898E-05	0.46805	0.00027113	579.2807321267147	74.401	0.52487	74.45	74.203	74.727	0.048546					31	18	2	0	0	0	0.02293	1	17595	17595		56.177	34.43	1	163290			25687	3192	17062	17227	34548	34548		209			-0.024564562141222268
YPIYGYDEL	9	Unmodified	_YPIYGYDEL_					0	0	0		nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2	nc|ENSG00000137073|Q5T6F2-2|UBAP2	nc|ENSG00000137073|Q5T6F2-2|UBAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7635498046875	2	566.763497	1131.51244	0.33099	0.00018759	-0.058527	-3.3171E-05	0.27246	0.00015442	566.7633489106721	71.379	0.67564	71.379	71.135	71.811	0					62	23	4	0	0	0	0.0010237	2	16818	16818;16860		123.1	102.64	1	808680			25688	2829	17063	17228	34549;34550	34549					-0.048053757504249006
YPIYGYDEL	9	Unmodified	_YPIYGYDEL_					0	0	0		nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2	nc|ENSG00000137073|Q5T6F2-2|UBAP2	nc|ENSG00000137073|Q5T6F2-2|UBAP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.763671875	2	566.763497	1131.51244	0.36136	0.00020481	-0.10259	-5.8144E-05	0.25877	0.00014666	566.7633134157843	71.283	0.68081	71.341	71.108	71.789	0.058578					57	24	4	0	0	0	0.004541	1	16651	16651		89.427	68.973	1	860470			25689	2829	17063	17228	34551	34551					-0.048053757504249006
YPKSILRDF	9	Unmodified	_YPKSILRDF_					0	0	0		ENSG00000102996|ENST00000219271|MMP15	ENSG00000102996|ENST00000219271|MMP15	ENSG00000102996|ENST00000219271|MMP15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8068237304688	2	569.816399	1137.61824	0.76383	0.00043524	-0.30732	-0.00017511	0.45652	0.00026013	569.8160991239534	81.42	0.60746	81.42	81.202	81.81	0					40	20	3	0	0	0	0.29105	1	19936	19936		7.9102	0	1	320430			25690	1342	17064	17229	34552	34552					0.05494004885713366
YPLAFGVPAAL	11	Unmodified	_YPLAFGVPAAL_					0	0	0		ENSG00000088386|ENST00000376503|SLC15A1	ENSG00000088386|ENST00000376503|SLC15A1	ENSG00000088386|ENST00000376503|SLC15A1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.816162109375	2	559.815867	1117.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.655	1	90.655	90.155	91.155	0								0	0	0	0.31142	1	22703	22703		10.824	1.4408	1				25691	1010	17065	17230	34553	34553					0.06307790516802925
YPLDLLLKL	9	Unmodified	_YPLDLLLKL_					0	0	0		ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4	ENST00000531290.5_1_11:118889505-118889751:+|nuORF	ENST00000531290.5_1_11:118889505-118889751:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.3419189453125	2	544.341718	1086.66888	0.18407	0.0001002	0.14191	7.7249E-05	0.32599	0.00017745	544.3417067167293	87.035	0.51762	87.035	86.857	87.374	0					44	22	3	0	0	0	0.0034419	1	21609	21609		106.94	63.082	1	600340			25692	5242	17066	17231	34554	34554					0.12901534210709542
YPLDLLLKL	9	Unmodified	_YPLDLLLKL_					0	0	0		ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4	ENST00000531290.5_1_11:118889505-118889751:+|nuORF	ENST00000531290.5_1_11:118889505-118889751:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.3416137695312	2	544.341718	1086.66888	0.18518	0.0001008	0.058276	3.1722E-05	0.24345	0.00013252	544.3416408060689	87.028	0.38222	87.055	86.927	87.309	0.027573					37	16	3	0	0	0	0.015341	1	21434	21434		61.602	33.973	1	914220			25693	5242	17066	17231	34555	34555					0.12901534210709542
YPLEDHTEF	9	Unmodified	_YPLEDHTEF_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.271240234375	2	575.756204	1149.49785	0.27878	0.00016051	-0.055403	-3.1899E-05	0.22338	0.00012861	575.7560766098743	51.084	0.42809	51.154	50.996	51.424	0.069878					23	16	2	0	0	0	0.24635	1	10505	10505		10.824	4.6181	1	105370			25694	1671	17067	17232	34556	34556					-0.0709144789855145
YPLEDLPSL	9	Unmodified	_YPLEDLPSL_					0	0	0		KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.3038330078125	2	523.773865	1045.53318	0.69986	0.00036657	-0.053677	-2.8114E-05	0.64619	0.00033846	523.7738950530054	79.979	0.3434	79.979	79.765	80.109	0					26	11	3	0	0	0	0.17491	1	19430	19430		28.487	11.545	1	118210			25695	797	17068	17233	34557	34557					0.012232146292262769
YPLEDLPSL	9	Unmodified	_YPLEDLPSL_					0	0	0		KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.3037719726562	2	523.773865	1045.53318	0.36789	0.00019269	0.17689	9.2653E-05	0.54478	0.00028534	523.7738417237049	79.961	0.50671	79.988	79.769	80.276	0.026428					29	17	3	0	0	0	0.20845	1	19276	19276		21.747	4.8044	1	144010			25696	797	17068	17233	34558	34558					0.012232146292262769
YPLGIVREVL	10	Unmodified	_YPLGIVREVL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.797119140625	2	579.847699	1157.68084	0.60536	0.00035101	-0.54311	-0.00031492	0.062245	3.6092E-05	579.8474708883236	69.835	0.47221	69.835	69.518	69.991	0					25	15	2	0	0	0	0.30784	1	16367	16367		20.581	7.5385	1	142890			25697	2476	17069	17234	34559	34559					0.10831150953913493
YPLGIVREVL	10	Unmodified	_YPLGIVREVL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7966918945312	2	579.847699	1157.68084	0.48024	0.00027847	0.083344	4.8327E-05	0.56358	0.00032679	579.847964122363	69.658	0.3598	69.718	69.58	69.94	0.060562					19	12	2	0	0	0	0.30478	1	16130	16130		21.59	4.4773	1	132100			25698	2476	17069	17234	34560	34560					0.10831150953913493
YPLIIYDVF	9	Unmodified	_YPLIIYDVF_					0	0	0		ENST00000496814.1_1_7:27689076-27702407:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH	ENST00000496814.1_1_7:27689076-27702407:-|nuORF	ENST00000496814.1_1_7:27689076-27702407:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.8106079101562	2	571.810251	1141.60595	0.50025	0.00028605	0.37101	0.00021215	0.87126	0.00049819	571.8103466558715	98.764	0.51693	98.764	98.583	99.1	0					74	33	3	0	0	0	0.030375	2	25160	25160;25177		50.855	38.323	1	608200			25699	1504	17070	17235	34561;34562	34561					0.040809684226587706
YPLIIYDVF	9	Unmodified	_YPLIIYDVF_					0	0	0		ENST00000496814.1_1_7:27689076-27702407:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH	ENST00000496814.1_1_7:27689076-27702407:-|nuORF	ENST00000496814.1_1_7:27689076-27702407:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.8103637695312	2	571.810251	1141.60595	0.51333	0.00029353	0.19783	0.00011312	0.71116	0.00040665	571.8102590229834	98.711	0.57421	98.753	98.579	99.153	0.041931					60	36	2	0	0	0	0.092418	2	25006	24997;25006		34.102	26.192	1	572090			25700	1504	17070	17235	34563;34564	34564					0.040809684226587706
YPLLLKEIL	9	Unmodified	_YPLLLKEIL_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.3497314453125	2	551.349543	1100.68453	0.3631	0.00020019	0.28434	0.00015677	0.64743	0.00035696	551.3496014897054	78.517	1.4437	78.517	77.899	79.342	0					131	49	4	0	0	0	0.0028323	5	18987	18936;18987;19033;19081;19144		110.67	0	1	1613300			25701	4559	17071	17236	34565;34566;34567;34568;34569	34566					0.1382182072775322
YPLLLKEIL	9	Unmodified	_YPLLLKEIL_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.349853515625	2	551.349543	1100.68453	0.55868	0.00030803	0.032744	1.8053E-05	0.59143	0.00032608	551.349454474166	78.453	1.651	78.483	77.846	79.497	0.030159					140	57	4	0	0	0	0.00034446	4	18798	18753;18798;18848;18904		134.3	0	1	2132200			25702	4559	17071	17236	34570;34571;34572;34573	34571					0.1382182072775322
YPLLLKEIL	9	Unmodified	_YPLLLKEIL_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	551.349543	1100.68453	0.3631	0.00020019	0.28434	0.00015677	0.64743	0.00035696	551.3496014897054	78.517	1.4437	78.517	77.899	79.342	0	0.016717	0.00013677	NaN	134.3	131	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1613300			25703	4559	17071	17236							0.1382182072775322
YPLPLQKE	8	Unmodified	_YPLPLQKE_					0	0	0		ENSG00000243710|ENST00000372492|CFAP57;nc|ENSG00000243710|Q96MR6-2|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.27935791015625	2	494.279118	986.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.06	1	114.07	113.57	114.57	0.013336								0	0	0	0.38822	1	29055	29055		0.79363	0	1				25704	5661	17072	17237	34574	34574					0.049872420743326984
YPLQLAELL	9	Unmodified	_YPLQLAELL_					0	0	0		ENST00000527365.1_1_2:131798892-131801189:+|nuORF;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000228741|Q96N96|SPATA13;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000182957|ENST00000382108|SPATA13;ENSG00000136002|ENST00000409359|ARHGEF4	ENST00000527365.1_1_2:131798892-131801189:+|nuORF	ENST00000527365.1_1_2:131798892-131801189:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	530.3079223632812	2	530.307875	1058.6012	0.51937	0.00027542	-0.18547	-9.8355E-05	0.3339	0.00017707	530.3076277369803	92.072	0.89767	92.072	91.815	92.713	0					78	33	4	0	0	0	0.03472	2	23116	23116;23158		47.749	22.349	1	899580			25705	2512	17073	17238	34575;34576	34575					0.07424084279909948
YPLQLAELL	9	Unmodified	_YPLQLAELL_					0	0	0		ENST00000527365.1_1_2:131798892-131801189:+|nuORF;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000228741|Q96N96|SPATA13;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000182957|ENST00000382108|SPATA13;ENSG00000136002|ENST00000409359|ARHGEF4	ENST00000527365.1_1_2:131798892-131801189:+|nuORF	ENST00000527365.1_1_2:131798892-131801189:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.3079223632812	2	530.307875	1058.6012	0.46774	0.00024805	-0.18032	-9.5624E-05	0.28743	0.00015242	530.3076530584308	92.083	0.81309	92.12	91.829	92.643	0.03653					67	28	4	0	0	0	0.03472	2	22948	22948;22996		47.749	23.728	1	823790			25706	2512	17073	17238	34577;34578	34577					0.07424084279909948
YPLYDLDL	8	Unmodified	_YPLYDLDL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.2555847167969	2	506.255308	1010.49606	0.27487	0.00013915	-0.45188	-0.00022876	-0.17701	-8.9612E-05	506.2550213129193	82.155	0.55204	82.177	81.846	82.398	0.021866					28	19	2	0	0	0	0.50815	1	19956	19956		11.64	3.7301	1	130910			25707	1110	17074	17239	34579	34579					-0.008764569165350622
YPMFPQKI	8	Unmodified	_YPMFPQKI_					0	0	0		ENST00000472704.1_1_X:41411986-41437658:-|nuORF	ENST00000472704.1_1_X:41411986-41437658:-|nuORF	ENST00000472704.1_1_X:41411986-41437658:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2720947265625	2	512.270238	1022.52592	0.045784	2.3454E-05	1.4555	0.0007456	1.5013	0.00076906	512.2709380464544	105.82	0.69343	105.82	105.56	106.25	0					94	67	2	0	0	0	0.54081	1	27328	27328		0.79363	0	1	60120			25708	6686	17075	17240	34580	34580					0.015562035478183134
YPNERFELL	9	Unmodified	_YPNERFELL_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8035888671875	2	590.803488	1179.59242	0.43248	0.00025551	-0.26587	-0.00015707	0.16661	9.8437E-05	590.8034179223375	61.214	0.62117	61.214	60.913	61.534	0					48	24	3	0	0	0	0.062017	2	13770	13770;13814		40.725	19.135	1	385850			25709	3968	17076	17241	34581;34582	34581					0.009811106434199246
YPNERFELL	9	Unmodified	_YPNERFELL_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8037719726562	2	590.803488	1179.59242	0.37808	0.00022337	-0.18919	-0.00011177	0.18889	0.0001116	590.8034421386873	61.095	0.52473	61.169	60.91	61.435	0.073421					43	17	3	0	0	0	0.034744	1	13598	13598		47.732	29.359	1	331130			25710	3968	17076	17241	34583	34583					0.009811106434199246
YPNFLVNEL	9	Unmodified	_YPNFLVNEL_					0	0	0		nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;ENSG00000143207|ENST00000367669|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.786865234375	2	554.787307	1107.56006	0.84225	0.00046727	-0.63099	-0.00035006	0.21126	0.0001172	555.2884079070029	81.988	0.67407	81.988	81.662	82.336	0					71	23	4	0	0	0	0.091044	2	20115	20063;20115		34.402	13.723	1	312860			25711	3140	17077	17242	34584;34585	34585					0.010583232404314913
YPNHHLAWI	9	Unmodified	_YPNHHLAWI_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7930908203125	2	575.793258	1149.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.426	1	78.426	77.926	78.926	0								0	0	0	0.23452	1	18983	18983		12.532	1.7076	1		+		25712	10697	17078	17243	34586	34586					0.003159847742836064
YPNKYESII	9	Unmodified	_YPNKYESII_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.R419H|1|0.23|ENSG00000006125|chr17:35636441-35636441|G/A|missense_variant	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.792724609375	2	563.792589	1125.57063	0.17788	0.00010029	0.40513	0.00022841	0.58301	0.0003287	563.7925501639469	50.258	0.73833	50.258	50.024	50.762	0					54	26	3	0	0	0	0.10543	2	10369	10369;10419		31.268	7.4786	1	276090			25713	366	17079	17244	34587;34588	34587					0.012863058948596517
YPNKYESII	9	Unmodified	_YPNKYESII_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.R419H|1|0.23|ENSG00000006125|chr17:35636441-35636441|G/A|missense_variant	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.7925415039062	2	563.792589	1125.57063	0.29756	0.00016776	-0.034726	-1.9578E-05	0.26283	0.00014818	563.7924714732471	50.212	0.54403	50.285	50.007	50.551	0.07312					38	18	3	0	0	0	0.19307	2	10265	10216;10265		19.362	5.7471	1	230630			25714	366	17079	17244	34589;34590	34590					0.012863058948596517
YPNKYESVI	9	Unmodified	_YPNKYESVI_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.7846069335938	2	556.784764	1111.55498	0.0069245	3.8555E-06	-0.52604	-0.00029289	-0.51912	-0.00028904	556.7845442239105	45.651	1.092	45.651	45.328	46.42	0					83	37	3	0	0	0	0.015341	2	9019	8971;9019		61.602	41.148	1	409050			25715	1176	17080	17245	34591;34592	34592					0.0036601937779323634
YPNKYESVI	9	Unmodified	_YPNKYESVI_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.78466796875	2	556.784764	1111.55498	0.29466	0.00016406	-0.20212	-0.00011254	0.092542	5.1526E-05	556.7845321848815	45.542	0.87503	45.627	45.368	46.243	0.085617					64	33	3	0	0	0	0.14444	2	8885	8804;8885		24.991	12.75	1	328990			25716	1176	17080	17245	34593;34594	34594					0.0036601937779323634
YPNPKPEVL	9	Unmodified	_YPNPKPEVL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2547607421875	2	528.78985	1055.56515	-0.18643	-9.8582E-05	0.18396	9.7276E-05	-0.0024706	-1.3064E-06	528.7895103496487	44.814	0.79366	44.814	44.444	45.238	0					61	28	3	0	0	0	0.21622	1	8794	8794		16.149	2.6412	1	64864			25717	3142	17081	17246	34595	34595					0.03958627103043
YPNPKPEVL	9	Unmodified	_YPNPKPEVL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.789794921875	2	528.78985	1055.56515	0.024733	1.3079E-05	-0.39128	-0.00020691	-0.36655	-0.00019383	528.7897316207757	44.693	0.76172	44.781	44.419	45.181	0.087543					43	27	2	0	0	0	0.28472	1	8637	8637		8.7454	0.15213	1	66229			25718	3142	17081	17246	34596	34596					0.03958627103043
YPNRPPRSPVL	11	Unmodified	_YPNRPPRSPVL_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.36474609375	2	648.364579	1294.7146	0.3805	0.0002467	0.11274	7.3095E-05	0.49324	0.0003198	648.3646632721375	100.51	0.68762	100.51	100.31	101	0					75	41	2	0	0	0	0.33846	1	25709	25709		13.615	3.5409	1	387420	+		25719	9789	17082	17247	34597	34597					0.07903572445638929
YPNRPPRSPVL	11	Unmodified	_YPNRPPRSPVL_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.3648071289062	2	648.364579	1294.7146	0.34616	0.00022444	0.057403	3.7218E-05	0.40357	0.00026166	648.3646224826739	100.51	0.718	100.55	100.32	101.04	0.042839					65	42	2	0	0	0	0.37393	1	25535	25535		9.544	1.6338	1	489350	+		25720	9789	17082	17247	34598	34598					0.07903572445638929
YPNRPPRSPVL	11	Unmodified	_YPNRPPRSPVL_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	648.364579	1294.7146	0.3805	0.0002467	0.11274	7.3095E-05	0.49324	0.0003198	648.3646632721375	100.51	0.68762	100.51	100.31	101	0	-0.019641	4.0212E-05	NaN	13.615	75	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387420	+		25721	9789	17082	17247							0.07903572445638929
YPNRPPRSPVL	11	Unmodified	_YPNRPPRSPVL_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	648.364579	1294.7146	0.34616	0.00022444	0.057403	3.7218E-05	0.40357	0.00026166	648.3646224826739	100.51	0.718	100.55	100.32	101.04	0.042839	0.019641	-3.1541E-05	NaN	13.615	65	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489350	+		25722	9789	17082	17247							0.07903572445638929
YPNSWFRF	8	Unmodified	_YPNSWFRF_					0	0	0			REV__nc|ENSG00000235217|Q9H489|TSPY26P	REV__nc|ENSG00000235217|Q9H489|TSPY26P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7670288085938	2	558.766709	1115.51886	0.63659	0.0003557	-0.11071	-6.1863E-05	0.52587	0.00029384	558.7665986563904	82.474	1.8469	82.474	81.931	83.778	0					142	64	3	0	0	0	0.41225	4	20179	20179;20225;20270;20323		24.674	0	1	1113500	+		25723	12053	17083	17248	34599;34600;34601;34602	34599					-0.03427393008382751
YPNSWFRF	8	Unmodified	_YPNSWFRF_					0	0	0			REV__nc|ENSG00000235217|Q9H489|TSPY26P	REV__nc|ENSG00000235217|Q9H489|TSPY26P	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.3002319335938	2	558.766709	1115.51886	0.74858	0.00041828	0.35445	0.00019805	1.103	0.00061634	558.7667570527212	83.972	0.72949	83.972	83.485	84.215	0					36	24	2	0	0	0	0.34292	1	20602	20602		24.674	6.5389	1	107210	+		25724	12053	17083	17248	34603	34603					-0.03427393008382751
YPNSWFRF	8	Unmodified	_YPNSWFRF_					0	0	0			REV__nc|ENSG00000235217|Q9H489|TSPY26P	REV__nc|ENSG00000235217|Q9H489|TSPY26P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.766845703125	2	558.766709	1115.51886	0.48978	0.00027367	-0.14232	-7.9524E-05	0.34746	0.00019415	558.7666104073393	82.421	1.6842	82.442	81.875	83.56	0.021744					130	59	3	0	0	0	0.25468	4	20017	19923;20017;20065;20117		38.151	13.477	1	1495500	+		25725	12053	17083	17248	34604;34605;34606;34607	34605					-0.03427393008382751
YPNTYIFDLF	10	Unmodified	_YPNTYIFDLF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	646.8135375976562	2	646.813522	1291.61249	0.38061	0.00024618	-0.16634	-0.00010759	0.21427	0.00013859	646.8132887769596	100.48	0.63417	100.48	100.24	100.87	0					107	38	4	0	0	0	0.15743	2	25679	25679;25727		38.615	22.466	1	282000			25726	1228	17084	17249	34608;34609	34608					-0.021651384166261778
YPNTYIFDLF	10	Unmodified	_YPNTYIFDLF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	646.8135375976562	2	646.813522	1291.61249	0.35935	0.00023243	-0.0723	-4.6764E-05	0.28705	0.00018567	646.81333748744	100.44	0.5033	100.48	100.26	100.76	0.042839					84	29	4	0	0	0	0.12844	2	25510	25510;25549		41.956	20.419	1	360370			25727	1228	17084	17249	34610;34611	34610					-0.021651384166261778
YPNYDKKY	8	Unmodified	_YPNYDKKY_					0	0	0			REV__ENSG00000155875|ENST00000380534|SAXO1	REV__ENSG00000155875|ENST00000380534|SAXO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.763671875	2	545.763832	1089.51311	0.051935	2.8344E-05	-1.1814	-0.00064477	-1.1295	-0.00061642	545.7634508303852	22.373	0.26406	22.475	22.263	22.527	0.10178					46	21	3	0	0	0	0.54097	1	1990	1990		0.69038	0.088878	1	24510	+		25728	9739	17085	17250	34612	34612					-0.02806536310708907
YPPGVGHFLA	10	Unmodified	_YPPGVGHFLA_					0	0	0		nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2769775390625	2	529.276909	1056.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.6	1	23.6	23.1	24.1	0								0	0	0	0.34018	1	2452	2452		0	0	1				25729	5083	17086	17251	34613	34613					0.013257776514365105
YPPHFYTE	8	Unmodified	_YPPHFYTE_					0	0	0		ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant;ENSG00000141579|ENST00000269394|ZNF750	ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7341918945312	2	527.23745	1052.46035	-0.1663	-8.7677E-05	-2.8033	-0.001478	-2.9696	-0.0015657	527.2358367241741	29.109	0.46324	29.187	29.063	29.527	0.078287					50	29	2	0	0	0	0.3576	1	3990	3990		0.79363	0	1	19920			25730	3070	17087	17252	34614	34614					-0.06378494373552712
YPPKEFIL	8	Unmodified	_YPPKEFIL_					0	0	0		nc|ENSG00000011347|O43581-6|SYT7;nc|ENSG00000011347|O43581-5|SYT7;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7	nc|ENSG00000011347|O43581-6|SYT7	nc|ENSG00000011347|O43581-6|SYT7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	503.7835693359375	2	503.784036	1005.55352	0.17078	8.6035E-05	0.2291	0.00011542	0.39987	0.00020145	503.7839646579063	95.584	0.81608	95.584	95.212	96.028	0					66	39	3	0	0	0	0.48462	2	24183	24183;24229		14.838	0	1	617570			25731	429	17088	17253	34615;34616	34615					0.0509643007970908
YPPTSPVQMQT	11	Unmodified	_YPPTSPVQMQT_					0	0	0		ENST00000530275.2_1_1:39875146-39875419:+|nuORF	ENST00000530275.2_1_1:39875146-39875419:+|nuORF	ENST00000530275.2_1_1:39875146-39875419:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.8008422851562	2	624.800088	1247.58562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.134	1	73.187	72.687	73.687	0.052574								0	0	0	0.31354	1	17208	17208		10.074	0.6908	1				25732	7021	17089	17254	34617	34617					-0.02826570299453124
YPPVEEPVA	9	Unmodified	_YPPVEEPVA_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.2665710449219	2	500.752933	999.491313	0.17992	9.0093E-05	0.11457	5.7371E-05	0.29448	0.00014746	500.75278162178756	51.777	0.44694	51.777	51.596	52.043	0					20	15	2	0	0	0	0.23975	1	10845	10845		14.838	5.4908	1	41412			25733	4755	17090	17255	34618	34618					-0.008453410592892396
YPPVEEPVA	9	Unmodified	_YPPVEEPVA_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.266845703125	2	500.752933	999.491313	0.27763	0.00013902	-0.16958	-8.4918E-05	0.10805	5.4104E-05	501.2543392243605	51.752	0.28999	51.822	51.71	52	0.069874					14	9	2	0	0	0	0.23975	1	10713	10713		14.838	6.9281	1	57097			25734	4755	17090	17255	34619	34619					-0.008453410592892396
YPPVQVLF	8	Unmodified	_YPPVQVLF_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	481.7710266113281	2	481.770929	961.527304	0.55684	0.00026827	-0.36275	-0.00017476	0.19408	9.3504E-05	481.77067149710365	80.719	0.58702	80.719	80.403	80.99	0					46	20	3	0	0	0	0.39998	2	19686	19640;19686		26.341	10.494	1	184000			25735	1940	17091	17256	34620;34621	34621					0.045001609082419236
YPPVQVLF	8	Unmodified	_YPPVQVLF_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	481.7709655761719	2	481.770929	961.527304	0.40281	0.00019406	0.12802	6.1674E-05	0.53083	0.00025574	481.7709094348112	80.637	0.58696	80.661	80.436	81.023	0.023613					42	20	3	0	0	0	0.45077	3	19496	19496;19546;19566		19.439	3.5918	1	150450			25736	1940	17091	17256	34622;34623;34624	34622					0.045001609082419236
YPQDWFQVL	9	Unmodified	_YPQDWFQVL_					0	0	0		ENST00000391859.6_1_19:49841166-49843582:+|nuORF;nc|ENSG00000104894|P11049-3|CD37;nc|ENSG00000104894|P11049-2|CD37;ENSG00000104894|ENST00000323906|CD37	ENST00000391859.6_1_19:49841166-49843582:+|nuORF	ENST00000391859.6_1_19:49841166-49843582:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.7809448242188	2	598.292756	1194.57096	0.27464	0.00016432	-1.7091	-0.0010226	-1.4345	-0.00085824	598.2913438382807	90.755	0.28307	90.755	90.602	90.885	0					13	10	2	0	0	0	0.22861	1	22749	22749		15.248	5.901	1	52883			25737	1442	17092	17257	34625	34625					-0.018542743852776766
YPQENIIDTF	10	Unmodified	_YPQENIIDTF_					0	0	0		ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1	ENSG00000136448|ENST00000258960|NMT1	ENSG00000136448|ENST00000258960|NMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.2979736328125	2	620.298236	1238.58192	-0.14489	-8.9876E-05	0.54268	0.00033662	0.39779	0.00024675	620.2982975737757	74.126	0.50311	74.126	73.949	74.452	0					43	18	3	0	0	0	0.079509	2	17664	17664;17717		49.527	10.912	1	462570			25738	2792	17093	17258	34626;34627	34626					-0.027829168016751282
YPQENIIDTF	10	Unmodified	_YPQENIIDTF_					0	0	0		ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1	ENSG00000136448|ENST00000258960|NMT1	ENSG00000136448|ENST00000258960|NMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.2984008789062	2	620.298236	1238.58192	0.14113	8.7543E-05	0.13965	8.6624E-05	0.28078	0.00017417	620.2981376262056	74.135	0.60466	74.184	73.962	74.567	0.048546					46	21	4	0	0	0	0.079509	1	17502	17502		49.527	10.912	1	401790			25739	2792	17093	17258	34628	34628					-0.027829168016751282
YPQGQAPPL	9	Unmodified	_YPQGQAPPL_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.7547912597656	2	485.753267	969.491981	-0.050618	-2.4588E-05	2.0527	0.00099709	2.002	0.0009725	485.75432539418676	49.321	0.9866	49.321	48.576	49.562	0					59	34	2	0	0	0	0.17247	1	10111	10111		21.747	4.8044	1	201840			25740	4683	17094	17259	34629	34629					0.006014983803993346
YPQNPDHVL	9	Unmodified	_YPQNPDHVL_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.76611328125	2	541.766906	1081.51926	-0.24049	-0.00013029	-0.82898	-0.00044911	-1.0695	-0.0005794	541.7663962628849	41.272	0.39245	41.362	41.181	41.573	0.089764					28	14	3	0	0	0	0.088609	1	7555	7555		34.932	17.99	1	99150			25741	2342	17095	17260	34630	34630					-0.018240180791963212
YPQQQQAL	8	Unmodified	_YPQQQQAL_					0	0	0			REV__ENST00000511473.5_1_5:180666163-180666565:-|nuORF	REV__ENST00000511473.5_1_5:180666163-180666565:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.25018310546875	2	488.248349	974.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.455	1	63.455	62.955	63.955	0								0	0	0	0.38796	1	14413	14413		14.582	1.0738	1		+		25742	12255	17096	17261	34631	34631					-0.0061168962496367385
YPQRVPDVL	9	Unmodified	_YPQRVPDVL_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2944946289062	2	543.800749	1085.58694	0.42401	0.00023058	0.64855	0.00035268	1.0726	0.00058326	543.8008608760088	71.336	0.42615	71.336	71.158	71.584	0					24	14	2	0	0	0	0.23975	1	16777	16777		14.838	0.93222	1	261690	+		25743	8666	17097	17262	34632	34632					0.04757431851612637
YPRATAPINS	10	Unmodified	_YPRATAPINS_					0	0	0			REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.2879028320312	2	545.288005	1088.56146	0.10772	5.8738E-05	-0.17936	-9.7805E-05	-0.071645	-3.9067E-05	545.2877720072045	20.535	0.28421	20.634	20.514	20.799	0.099499					52	32	2	0	0	0	0.4753	2	1514	1514;1544		0	0	1	18562	+		25744	9881	17098	17263	34633;34634	34633					0.02071957329144425
YPRSRLGGSH	10	Unmodified	_YPRSRLGGSH_					0	0	0		ENST00000512101.5_1_11:67058196-67058343:+|nuORF	ENST00000512101.5_1_11:67058196-67058343:+|nuORF	ENST00000512101.5_1_11:67058196-67058343:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.2964477539062	2	565.296696	1128.57884	-0.12846	-7.2618E-05	0.073969	4.1815E-05	-0.05449	-3.0803E-05	565.2962806221561	29.42	0.40351	29.498	29.329	29.733	0.078287					30	22	2	0	0	0	0.4753	1	3977	3977		0	0	1	22063			25745	6920	17099	17264	34635	34635					0.019692976548640218
YPSDIAVEW	9	Unmodified	_YPSDIAVEW_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2555541992188	2	540.25584	1078.49713	0.50972	0.00027538	-0.85451	-0.00046165	-0.34478	-0.00018627	540.7571518171258	73.832	0.34344	73.882	73.646	73.99	0.049736					18	12	2	0	0	0	0.10833	1	17412	17412		30.637	5.2372	1	105070			25746	7601	17100	17265	34636	34636					-0.03898242547620612
YPSEKDKI	8	Unmodified	_YPSEKDKI_					0	0	0		tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	490.2570495605469	2	490.258382	978.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.39	1	103.39	102.89	103.89	0								0	0	0	0.38822	1	26576	26576		0.79363	0	1				25747	13462	17101	17266	34637	34637					0.012100613149868877
YPSEQEKAL	9	Unmodified	_YPSEQEKAL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7666625976562	2	532.766571	1063.51859	-0.063981	-3.4087E-05	0.10091	5.376E-05	0.036926	1.9673E-05	532.7666058932416	32.621	0.54477	32.621	32.385	32.93	0					70	26	4	0	0	0	0.026809	2	5090	5048;5090		53.404	27.136	1	222840			25748	4702	17102	17267	34638;34639	34639					-0.010628575189002731
YPSEQEKAL	9	Unmodified	_YPSEQEKAL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7666625976562	2	532.766571	1063.51859	0.09933	5.292E-05	-0.015613	-8.3182E-06	0.083717	4.4601E-05	532.7665311916705	32.568	0.51923	32.641	32.473	32.992	0.07378					64	26	3	0	0	0	0.032232	2	4957	4918;4957		49.527	23.259	1	169470			25749	4702	17102	17267	34640;34641	34641					-0.010628575189002731
YPSEQEKALL	10	Unmodified	_YPSEQEKALL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3084106445312	2	589.308603	1176.60265	-0.081856	-4.8238E-05	-0.019678	-1.1596E-05	-0.10153	-5.9834E-05	589.3085496893322	45.071	1.1239	45.071	44.779	45.902	0					101	39	4	0	0	0	0.0018524	2	8786	8786;8882		83.278	49.833	1	524800			25750	4702	17103	17268	34642;34643	34642					0.0214167357801216
YPSEQEKALL	10	Unmodified	_YPSEQEKALL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3087158203125	2	589.308603	1176.60265	0.23946	0.00014111	0.1656	9.7591E-05	0.40506	0.00023871	589.3086388059872	44.992	0.83623	45.079	44.804	45.64	0.087543					76	31	3	0	0	0	0.0010325	3	8662	8630;8662;8710		89.609	50.994	1	442360			25751	4702	17103	17268	34644;34645;34646	34645					0.0214167357801216
YPSEQEKLSL	10	Unmodified	_YPSEQEKLSL_					0	0	0		nc|ENSG00000118707|Q9GZN2-2|TGIF2;ENSG00000118707|ENST00000373872|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.3060302734375	2	597.306061	1192.59757	0.31959	0.00019089	-0.36792	-0.00021976	-0.048339	-2.8873E-05	597.3058375089454	47.132	0.61678	47.132	46.967	47.583	0					46	20	3	0	0	0	0.0013275	2	9484	9434;9484		85.764	45.815	1	351840			25752	2045	17104	17269	34647;34648	34648					0.008973697153805915
YPSEQEKLSL	10	Unmodified	_YPSEQEKLSL_					0	0	0		nc|ENSG00000118707|Q9GZN2-2|TGIF2;ENSG00000118707|ENST00000373872|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.3050537109375	2	597.306061	1192.59757	0.20629	0.00012322	-0.09214	-5.5036E-05	0.11415	6.8185E-05	597.3059976196777	47.107	0.49736	47.19	46.964	47.461	0.083096					42	18	3	0	0	0	0.044868	2	9283	9283;9331		59.052	22.113	1	260810			25753	2045	17104	17269	34649;34650	34649					0.008973697153805915
YPSLIWEVF	9	Unmodified	_YPSLIWEVF_					0	0	0		nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.2992553710938	2	577.30005	1152.58555	0.51314	0.00029624	-1.7609	-0.0010166	-1.2478	-0.00072035	577.2987410724661	100.93	0.68849	100.98	100.76	101.45	0.042831					58	41	2	0	0	0	0.17247	1	25685	25685		21.747	4.6338	1	119790			25754	4287	17105	17270	34651	34651					0.015357977628582375
YPSLREAAL	9	Unmodified	_YPSLREAAL_					0	0	0		ENSG00000147381|ENST00000276344|MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4	ENSG00000147381|ENST00000276344|MAGEA4	ENSG00000147381|ENST00000276344|MAGEA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.2796936035156	2	510.279649	1018.54475	0.16159	8.2458E-05	0.16399	8.3683E-05	0.32559	0.00016614	510.279698795308	50.81	0.97557	50.81	50.264	51.239	0					86	33	3	0	0	0	0.0047429	3	10561	10462;10508;10561		83.429	47.302	1	619290			25755	190	17106	17271	34652;34653;34654	34654					0.036214564432157204
YPSLREAAL	9	Unmodified	_YPSLREAAL_					0	0	0		ENSG00000147381|ENST00000276344|MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4	ENSG00000147381|ENST00000276344|MAGEA4	ENSG00000147381|ENST00000276344|MAGEA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.279541015625	2	510.279649	1018.54475	0.2729	0.00013926	0.20245	0.00010331	0.47535	0.00024256	510.2796726362751	50.708	0.89378	50.781	50.263	51.157	0.07312					79	32	3	0	0	0	0.0077293	3	10403	10313;10360;10403		74.2	41.894	1	436420			25756	190	17106	17271	34655;34656;34657	34657					0.036214564432157204
YPSNIFISF	9	Unmodified	_YPSNIFISF_					0	0	0		ENSG00000140006|ENST00000620954|WDR89	ENSG00000140006|ENST00000620954|WDR89	ENSG00000140006|ENST00000620954|WDR89	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.27685546875	2	544.276575	1086.5386	0.33517	0.00018243	0.45611	0.00024825	0.79128	0.00043067	544.2766934829568	87.34	0.87922	87.34	87.069	87.948	0					104	32	4	0	0	0	0.0044607	1	21700	21700		92.491	28.531	1	1230600			25757	2995	17107	17272	34658	34658					-0.0012106178830890713
YPSPFFVF	8	Unmodified	_YPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	502.2498474121094	2	502.249829	1002.48511	0.22233	0.00011166	-0.36121	-0.00018142	-0.13888	-6.9752E-05	502.24930927773426	95.397	0.36641	95.397	95.175	95.541	0					29	15	3	0	0	0	0.41225	1	24138	24138		24.674	8.8267	1	346870			25758	2748	17108	17273	34659	34659					-0.01603814500140288
YPSPFFVF	8	Unmodified	_YPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	502.2497253417969	2	502.249829	1002.48511	0.20119	0.00010105	-0.93575	-0.00046998	-0.73456	-0.00036893	502.24926116851174	95.407	0.51457	95.445	95.172	95.687	0.038872					52	24	3	0	0	0	0.45077	1	23966	23966		19.439	0.18201	1	350370			25759	2748	17108	17273	34660	34660					-0.01603814500140288
YPSQDNDRL	9	Unmodified	_YPSQDNDRL_					0	0	0		ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.2568359375	2	554.256902	1106.49925	0.030059	1.666E-05	-0.12332	-6.8349E-05	-0.093257	-5.1688E-05	554.2567768409399	31.889	0.85616	31.889	31.649	32.505	0					69	34	4	0	0	0	0.071704	1	4878	4878		38.615	14.825	1	121750			25760	3275	17109	17274	34661	34661					-0.049738138098064155
YPSQDNDRL	9	Unmodified	_YPSQDNDRL_					0	0	0		ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.2569580078125	2	554.256902	1106.49925	0.15475	8.5769E-05	-0.20576	-0.00011405	-0.051019	-2.8277E-05	554.2567485917273	31.821	0.77548	31.895	31.715	32.491	0.073782					69	36	3	0	0	0	0.1019	2	4701	4701;4754		32.037	13.664	1	103030			25761	3275	17109	17274	34662;34663	34662					-0.049738138098064155
YPTEDYKV	8	Unmodified	_YPTEDYKV_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.74224853515625	2	507.742565	1013.47058	-0.14787	-7.5079E-05	0.097899	4.9708E-05	-0.049969	-2.5371E-05	507.7425043877011	39.898	0.84474	39.898	39.661	40.505	0					37	29	2	0	0	0	0.2073	1	7250	7250		41.84	23.693	1	137010			25762	4213	17110	17275	34664	34664					-0.03561931438946431
YPTEDYKV	8	Unmodified	_YPTEDYKV_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.74249267578125	2	507.742565	1013.47058	-0.0077179	-3.9187E-06	0.099819	5.0682E-05	0.092101	4.6764E-05	507.7425112726692	39.833	0.64822	39.922	39.695	40.343	0.088562					48	24	3	0	0	0	0.41706	2	7091	7091;7138		24.021	12.38	1	118060			25763	4213	17110	17275	34665;34666	34665					-0.03561931438946431
YPTFYLDL	8	Unmodified	_YPTFYLDL_					0	0	0			REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|2	REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.2571411132812	2	516.257851	1030.50115	0.31939	0.00016489	-1.3465	-0.00069517	-1.0272	-0.00053028	516.2570745383194	79.544	0.33198	79.57	79.437	79.769	0.026436					20	11	2	0	0	0	0.46914	1	19179	19179		16.942	1.0951	1	155670	+		25764	7803	17111	17276	34667	34667					-0.012881530539061714
YPTISLHAL	9	Unmodified	_YPTISLHAL_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	507.7845153808594	2	507.784567	1013.55458	0.30695	0.00015586	-0.20204	-0.00010259	0.10491	5.3274E-05	507.78439290434835	62.299	0.98468	62.299	61.898	62.883	0					80	37	3	0	0	0	0.0025191	2	14088	13999;14088		112.59	74.972	1	531840			25765	802	17112	17277	34668;34669	34669					0.04834644448601466
YPTISLHAL	9	Unmodified	_YPTISLHAL_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	507.7845153808594	2	507.784567	1013.55458	0.29392	0.00014925	-0.32028	-0.00016263	-0.026356	-1.3383E-05	507.78434697213277	62.174	0.78226	62.247	61.935	62.717	0.073418					69	28	3	0	0	0	0.004452	2	13927	13825;13927		92.822	65.938	1	555410			25766	802	17112	17277	34670;34671	34671					0.04834644448601466
YPTKKSSVF	9	Unmodified	_YPTKKSSVF_					0	0	0			REV__SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	REV__SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7896118164062	2	528.78985	1055.56515	0.024733	1.3079E-05	-0.39128	-0.00020691	-0.36655	-0.00019383	528.7897316207757	44.693	0.76172	44.781	44.419	45.181	0.087543					43	27	2	0	0	0	0.27929	1	8587	8587		9.3831	1.2276	1	66229	+		25767	9001	17113	17278	34672	34672					0.03958627103043
YPTLEQISF	9	Unmodified	_YPTLEQISF_					0	0	0		tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1	tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1	tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.26708984375	2	549.279315	1096.54408	0.29628	0.00016274	0.35179	0.00019323	0.64807	0.00035597	549.78137758282	53.238	0.20102	53.238	53.113	53.314	0					11	8	2	0	0	0	0.25504	1	11315	11315		4.756	0.42677	1	44838			25768	13640	17114	17279	34673	34673					-0.0003338299648021348
YPTPSDFGL	9	Unmodified	_YPTPSDFGL_					0	0	0		ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.73773193359375	2	498.737283	995.460012	0.45027	0.00022457	0.11822	5.8959E-05	0.56848	0.00028352	498.73725720309494	75.758	0.55325	75.758	75.268	75.822	0					38	23	2	0	0	0	0.024893	2	18153	18105;18153		54.774	33.027	1	516570			25769	5155	17115	17280	34674;34675	34675					-0.03789914093374591
YPTPSDFGL	9	Unmodified	_YPTPSDFGL_					0	0	0		ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.7375183105469	2	498.737283	995.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.528	1	75.572	75.072	76.072	0.044037								0	0	0	0.058966	1	17938	17938		46.021	19.137	1				25770	5155	17115	17280	34676	34676					-0.03789914093374591
YPTPSDFGL	9	Unmodified	_YPTPSDFGL_					0	0	0		ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.73773193359375	2	498.737283	995.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.681	1	75.725	75.225	76.225	0.044037								0	0	0	0.058966	1	17985	17985		46.021	19.137	1				25771	5155	17115	17280	34677	34677					-0.03789914093374591
YPTRTNEEL	9	Unmodified	_YPTRTNEEL_					0	0	0		XYLT2|p.G529Afs*78|1|0.35|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant;nc|ENSG00000015532|Q9H1B5-2|XYLT2;ENSG00000015532|ENST00000017003|XYLT2	XYLT2|p.G529Afs*78|1|0.35|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant	XYLT2|p.G529Afs*78|1|0.35|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7747802734375	2	561.774928	1121.5353	0.0122	6.8536E-06	-0.77469	-0.0004352	-0.76249	-0.00042835	561.7746149624071	33.862	0.57809	33.862	33.628	34.206	0					36	18	3	0	0	0	0.29718	1	5432	5432		7.1017	0.37856	1	66041			25772	459	17116	17281	34678	34678					-0.02060356632955518
YPTSDILVI	9	Unmodified	_YPTSDILVI_					0	0	0			REV__ENST00000484599.1_1_1:45243341-45243407:+|nuORF	REV__ENST00000484599.1_1_1:45243341-45243407:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.7845764160156	2	510.784233	1019.55391	0.70421	0.0003597	-0.3372	-0.00017224	0.36701	0.00018746	510.7841725330021	84.903	0.32837	84.903	84.804	85.132	0					19	11	2	0	0	0	0.1182	1	20981	20981		28.487	0	1	95259	+		25773	9446	17117	17282	34679	34679					0.04491805008899519
YPTVDSNSL	9	Unmodified	_YPTVDSNSL_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	498.23785400390625	2	498.237647	994.460741	0.26043	0.00012975	0.23677	0.00011797	0.4972	0.00024772	498.2376769770762	52.635	0.71721	52.635	52.368	53.085	0					53	25	3	0	0	0	1.0594E-10	2	11123	11123;11169		176.84	115.48	1	869150			25774	4247	17118	17283	34680;34681	34680					-0.03671119444334181
YPTVDSNSL	9	Unmodified	_YPTVDSNSL_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	498.23773193359375	2	498.237647	994.460741	0.37286	0.00018578	0.092386	4.603E-05	0.46525	0.00023181	498.2375892087497	52.553	0.64703	52.62	52.412	53.059	0.067173					58	25	3	0	0	0	7.6155E-09	2	10973	10973;11014		163.04	100.46	1	704510			25775	4247	17118	17283	34682;34683	34682					-0.03671119444334181
YPTVLTFIL	9	Unmodified	_YPTVLTFIL_					0	0	0		ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	ENSG00000172197|ENST00000324607|MBOAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.81298828125	2	533.812793	1065.61103	0.62006	0.000331	-0.24627	-0.00013146	0.37379	0.00019954	533.8125913878416	97.485	0.75763	97.485	97.461	98.219	0					66	38	4	0	0	0	0.25979	1	24867	24867		11.64	0	1	787840			25776	4482	17119	17284	34684	34684					0.08085272285279643
YPTYPTHF	8	Unmodified	_YPTYPTHF_					0	0	0		ENST00000334512.9_1_10:81072492-81072669:+|nuORF	ENST00000334512.9_1_10:81072492-81072669:+|nuORF	ENST00000334512.9_1_10:81072492-81072669:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2410278320312	2	513.239993	1024.46543	0.22542	0.00011569	1.5878	0.00081491	1.8132	0.0009306	513.2408097560084	95.352	0.2379	95.391	95.239	95.477	0.038872					15	9	2	0	0	0	0.39998	2	23983	23983;23995		26.341	3.1929	1	74564			25777	6069	17120	17285	34685;34686	34685					-0.045821905109278305
YPVDLGDKF	9	Unmodified	_YPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2664184570312	2	527.266207	1052.51786	0.30785	0.00016232	0.1223	6.4482E-05	0.43014	0.0002268	527.2662201556594	57.121	0.81845	57.121	56.805	57.623	0					98	29	4	0	0	0	1.1335E-12	4	12494	12441;12494;12547;12598		179.17	108.46	1	2156200			25778	3956	17121	17286	34687;34688;34689;34690	34688					-0.006296521679814759
YPVDLGDKF	9	Unmodified	_YPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2664794921875	2	527.266207	1052.51786	0.34683	0.00018287	0.12648	6.6687E-05	0.4733	0.00024956	527.2662416128468	57.039	0.77935	57.108	56.827	57.606	0.068298					94	29	4	0	0	0	1.8728E-05	3	12330	12281;12330;12431		140.63	89.778	1	1924800			25779	3956	17121	17286	34691;34692;34693	34692					-0.006296521679814759
YPVEDFEASF	10	Unmodified	_YPVEDFEASF_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.2640380859375	2	602.263862	1202.51317	0.55335	0.00033326	0.67195	0.00040469	1.2253	0.00073795	602.2641855872025	75.47	0.49986	75.47	75.174	75.674	0					36	15	3	0	0	0	0.085977	1	18096	18096		47.749	24.6	1	537820			25780	824	17122	17287	34694	34694					-0.07998581101401214
YPVEDFEASF	10	Unmodified	_YPVEDFEASF_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.8050537109375	2	602.263862	1202.51317	0.53095	0.00031977	0.60858	0.00036653	1.1395	0.0006863	602.2642802857066	75.367	0.47083	75.411	75.209	75.68	0.044037					34	14	3	0	0	0	0.22254	1	17922	17922		47.749	20.12	1	384470			25781	824	17122	17287	34695	34695					-0.07998581101401214
YPVEDYLDL	9	Unmodified	_YPVEDYLDL_					0	0	0		nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	563.769775390625	2	563.76878	1125.52301	0.66664	0.00037583	1.0052	0.00056671	1.6719	0.00094254	563.7689301731234	79.875	0.77771	79.875	79.536	80.313	0					62	26	3	0	0	0	0.14091	2	19391	19391;19439		25.399	0	1	601160			25782	4855	17123	17288	34696;34697	34696					-0.034733930960101134
YPVEDYLDLF	10	Unmodified	_YPVEDYLDLF_					0	0	0		nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.3027954101562	2	637.302987	1272.59142	0.26048	0.00016601	-0.39001	-0.00024855	-0.12952	-8.2546E-05	637.3026768216135	96.289	0.69701	96.289	96.07	96.768	0					98	31	4	0	0	0	0.00053338	4	24435	24393;24435;24485;24540		96.111	96.111	1	2778300			25783	4855	17124	17289	34698;34699;34700;34701	34699					-0.03397148516160087
YPVEDYLDLF	10	Unmodified	_YPVEDYLDLF_					0	0	0		nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.3028564453125	2	637.302987	1272.59142	0.3301	0.00021037	-0.47718	-0.00030411	-0.14708	-9.3736E-05	637.302595037574	96.304	0.72958	96.344	96.072	96.802	0.039772					104	38	4	0	0	0	0.0013369	4	24264	24225;24264;24311;24370		85.642	85.642	1	1612700			25784	4855	17124	17289	34702;34703;34704;34705	34703					-0.03397148516160087
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2750854492188	2	566.277106	1130.53966	0.0029275	1.6578E-06	-1.3528	-0.00076607	-1.3499	-0.00076442	566.2760860755637	34.855	0.43023	34.855	34.718	35.148	0					23	15	2	0	0	0	0.28919	1	5736	5736		8.1555	5.1603	1	49300			25785	4073	17125	17290	34706	34706					-0.020388474193850925
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2763671875	2	566.277106	1130.53966	0.051434	2.9126E-05	-1.0596	-0.00060004	-1.0082	-0.00057092	566.2764808595931	34.795	0.26071	34.871	34.753	35.014	0.076244					16	9	2	0	0	0	0.2359	1	5610	5610		14.405	9.8765	1	65307			25786	4073	17125	17290	34707	34707					-0.020388474193850925
YPVEIHEYL	9	Unmodified	_YPVEIHEYL_					0	0	0		ENST00000485709.1_1_2:68273401-68290109:-|nuORF;ENSG00000197223|ENST00000410067|C1D	ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENST00000485709.1_1_2:68273401-68290109:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7929077148438	2	581.792589	1161.57063	0.61573	0.00035823	-0.3031	-0.00017634	0.31263	0.00018189	581.792423288581	60.196	1.5227	60.196	59.895	61.418	0					170	54	5	0	0	0	3.8843E-24	6	13417	13369;13417;13463;13508;13558;13568		225.63	128.56	1	7395900			25787	5282	17126	17291	34708;34709;34710;34711;34712;34713	34709					-0.003696941051430258
YPVEIHEYL	9	Unmodified	_YPVEIHEYL_					0	0	0		ENST00000485709.1_1_2:68273401-68290109:-|nuORF;ENSG00000197223|ENST00000410067|C1D	ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENST00000485709.1_1_2:68273401-68290109:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7927856445312	2	581.792589	1161.57063	0.425	0.00024726	-0.10297	-5.9907E-05	0.32203	0.00018735	581.7925268511862	60.095	1.6152	60.167	59.852	61.468	0.072342					160	57	5	0	0	0	3.8843E-24	5	13251	13251;13297;13346;13388;13397		225.63	128.56	1	6643500			25788	5282	17126	17291	34714;34715;34716;34717;34718	34714					-0.003696941051430258
YPVEVELKL	9	Unmodified	_YPVEVELKL_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.3035888671875	2	545.313158	1088.61176	0.67815	0.0003698	0.4928	0.00026873	1.1709	0.00063853	545.3132986212692	65.564	0.56406	65.564	65.344	65.909	0					41	20	3	0	0	0	0.23478	1	15144	15144		17.113	17.113	1	336060			25789	450	17127	17292	34719	34719					0.07100066934322058
YPVEVELKL	9	Unmodified	_YPVEVELKL_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.30322265625	2	545.313158	1088.61176	0.53962	0.00029426	2.5626	0.0013974	3.1022	0.0016917	545.3144328343736	65.828	0.18286	65.895	65.788	65.971	0.066872					9	6	2	0	0	0	0.16392	1	14976	14976		22.736	9.2284	1	58139			25790	450	17127	17292	34720	34720					0.07100066934322058
YPVEVELKL	9	Unmodified	_YPVEVELKL_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	545.313158	1088.61176	0.49958	0.00027243	0.47861	0.00026099	0.97819	0.00053342	545.3132195849294	65.545	0.42303	65.612	65.365	65.788	0.066872	0.02423	-8.9786E-06	NaN	17.113	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468830			25791	450	17127	17292							0.07100066934322058
YPVFLFYF	8	Unmodified	_YPVFLFYF_					0	0	0		nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6	nc|ENSG00000181704|Q96EC8-2|YIPF6	nc|ENSG00000181704|Q96EC8-2|YIPF6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2789306640625	2	548.281129	1094.54771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.51	1	105.54	105.04	106.04	0.029739								0	0	0	0.38822	1	27001	27001		0.79363	0	1				25792	4842	17128	17293	34721	34721					0.004213315680317464
YPVKDKWGV	9	Unmodified	_YPVKDKWGV_					0	0	0			REV__THBS4|p.S880P|1|0.13|ENSG00000113296|chr5:80080031-80080031|T/C|missense_variant	REV__THBS4|p.S880P|1|0.13|ENSG00000113296|chr5:80080031-80080031|T/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.2453002929688	2	546.297842	1090.58113	0.24423	0.00013342	0.57169	0.00031232	0.81592	0.00044574	546.7992504600453	36.499	0.12615	36.581	36.536	36.662	0.081715					5	4	2	0	0	0	0.25875	1	6132	6132		1.8442	0	1	11329	+		25793	13024	17129	17294	34722	34722					0.039463333399453404
YPVKEQESI	9	Unmodified	_YPVKEQESI_					0	0	0		ENST00000460863.1_1_2:114500256-114501404:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5;ENST00000498768.1_1_2:114500256-114514010:-|nuORF;ENSG00000115084|ENST00000245680|SLC35F5	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7826538085938	2	546.782222	1091.54989	0.17669	9.661E-05	0.23598	0.00012903	0.41267	0.00022564	546.7823110011285	35.865	0.55582	35.865	35.675	36.231	0					45	21	3	0	0	0	0.17428	2	6031	6031;6077		21.537	3.402	1	105810			25794	1873	17130	17295	34723;34724	34723					0.007777155151870829
YPVKEQESI	9	Unmodified	_YPVKEQESI_					0	0	0		ENST00000460863.1_1_2:114500256-114501404:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5;ENST00000498768.1_1_2:114500256-114514010:-|nuORF;ENSG00000115084|ENST00000245680|SLC35F5	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	546.7823486328125	2	546.782222	1091.54989	0.20733	0.00011336	0.23576	0.00012891	0.44309	0.00024227	546.7822709644084	35.822	0.4261	35.901	35.711	36.137	0.078827					36	15	3	0	0	0	0.2359	2	5897	5897;5939		14.405	6.4952	1	81292			25795	1873	17130	17295	34725;34726	34725					0.007777155151870829
YPVKYTQTF	9	Unmodified	_YPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7951049804688	2	573.795132	1145.57571	0.37424	0.00021474	-0.081474	-4.6749E-05	0.29277	0.00016799	573.7949262303538	47.18	0.61678	47.18	46.967	47.583	0					80	20	6	0	0	0	7.6155E-09	2	9443	9443;9494		163.04	98.8	1	550270			25796	1756	17131	17296	34727;34728	34727					0.008746097574658052
YPVKYTQTF	9	Unmodified	_YPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.7950439453125	2	573.795132	1145.57571	0.34121	0.00019579	0.032318	1.8544E-05	0.37353	0.00021433	573.7949684270508	47.068	0.59695	47.151	46.937	47.534	0.083096					47	22	3	0	0	0	0.0022565	2	9289	9289;9341		114.2	59.428	1	447970			25797	1756	17131	17296	34729;34730	34729					0.008746097574658052
YPVNSVNIL	9	Unmodified	_YPVNSVNIL_					0	0	0		ENST00000412860.1_1_7:42834686-42835559:+|nuORF;ENSG00000120438|ENST00000321394|TCP1	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.7813415527344	2	509.782025	1017.5495	0.42056	0.00021439	-0.53942	-0.00027499	-0.11886	-6.0595E-05	509.78164816735233	68.686	0.54996	68.686	68.408	68.958	0					31	20	2	0	0	0	0.26104	1	16000	16000		11.495	2.7493	1	126560			25798	2120	17132	17297	34731	34731					0.04142340586008686
YPVNSVNIL	9	Unmodified	_YPVNSVNIL_					0	0	0		ENST00000412860.1_1_7:42834686-42835559:+|nuORF;ENSG00000120438|ENST00000321394|TCP1	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.259521484375	2	509.782025	1017.5495	0.32188	0.00016409	-0.074488	-3.7973E-05	0.24739	0.00012612	509.78190445978566	68.566	0.49274	68.629	68.454	68.946	0.0634					32	18	3	0	0	0	0.24929	1	15862	15862		9.3831	9.3831	1	131250			25799	2120	17132	17297	34732	34732					0.04142340586008686
YPVQQDYFG	9	Unmodified	_YPVQQDYFG_					0	0	0			REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF	REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7670288085938	2	558.753464	1115.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.823	1	82.844	82.344	83.344	0.021744								0	0	0	0.22979	1	20161	20161		13.508	0.46542	1		+		25800	7944	17133	17298	34733	34733					-0.060751266903935175
YPVRDNTI	8	Unmodified	_YPVRDNTI_					0	0	0		ENSG00000122012|ENST00000502798|SV2C;ENST00000506257.1_1_5:75587598-75591783:+|nuORF	ENSG00000122012|ENST00000502798|SV2C	ENSG00000122012|ENST00000502798|SV2C	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2560119628906	2	489.256174	976.497795	-0.19939	-9.7553E-05	-0.27014	-0.00013217	-0.46953	-0.00022972	489.25594875495017	31.768	0.56253	31.768	31.597	32.16	0					45	22	3	0	0	0	0.35759	1	4811	4811		10.824	0	1	55812			25801	2170	17134	17299	34734	34734					0.00860596892096055
YPVRDNTI	8	Unmodified	_YPVRDNTI_					0	0	0		ENSG00000122012|ENST00000502798|SV2C;ENST00000506257.1_1_5:75587598-75591783:+|nuORF	ENSG00000122012|ENST00000502798|SV2C	ENSG00000122012|ENST00000502798|SV2C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	489.256174	976.497795	-0.16219	-7.9351E-05	-0.07023	-3.4361E-05	-0.23242	-0.00011371	489.25604943980767	31.739	0.5318	31.812	31.595	32.127	0.073782	0.021958	0.00010505	NaN	10.824	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55671			25802	2170	17134	17299							0.00860596892096055
YPVSCGAF	8	Unmodified	_YPVSCGAF_					0	0	0		ENST00000467699.5_1_17:7604102-7605361:+|nuORF	ENST00000467699.5_1_17:7604102-7605361:+|nuORF	ENST00000467699.5_1_17:7604102-7605361:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.18853759765625	2	422.188914	842.363275	0.36646	0.00015472	-0.76269	-0.000322	-0.39622	-0.00016728	422.18844871758176	97.117	0.32778	97.158	97.032	97.36	0.040855					25	14	2	0	0	0	0.53771	1	24490	24490		2.8892	0	1	134550			25803	6648	17135	17300	34735	34735					-0.06421179854169168
YPVSCGAF	8	Unmodified	_YPVSCGAF_					0	0	0		ENST00000467699.5_1_17:7604102-7605361:+|nuORF	ENST00000467699.5_1_17:7604102-7605361:+|nuORF	ENST00000467699.5_1_17:7604102-7605361:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	422.188914	842.363275	0.66823	0.00028212	-0.84813	-0.00035807	-0.1799	-7.5952E-05	422.1884402096995	97.078	0.5877	97.078	96.851	97.438	0	-0.039901	-1.7904E-05	NaN	2.8892	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136960			25804	6648	17135	17300							-0.06421179854169168
YPVSGCFDYL	10	Unmodified	_YPVSGCFDYL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.2581176757812	2	582.257525	1162.5005	0.96611	0.00056252	-1.139	-0.0006632	-0.1729	-0.00010067	582.2572187118838	80.664	1.058	80.664	80.403	81.461	0					72	36	4	0	0	0	0.17902	2	19650	19650;19702		36.127	22.221	1	218410			25805	1239	17136	17301	34736;34737	34736					-0.07425315765249252
YPVSGCFDYL	10	Unmodified	_YPVSGCFDYL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.2582397460938	2	582.257525	1162.5005	0.88824	0.00051718	-0.81173	-0.00047264	0.076505	4.4545E-05	582.2571459709945	80.734	0.9241	80.758	80.436	81.36	0.023605					64	32	3	0	0	0	0.078033	2	19519	19480;19519		49.933	36.027	1	169250			25806	1239	17136	17301	34738;34739	34739					-0.07425315765249252
YPVSKPDVI	9	Unmodified	_YPVSKPDVI_					0	0	0		nc|ENSG00000145908|Q96RE9-4|ZNF300;ENSG00000145908|ENST00000274599|ZNF300;nc|ENSG00000145908|Q96RE9-2|ZNF300;nc|ENSG00000145908|Q96RE9-3|ZNF300	nc|ENSG00000145908|Q96RE9-4|ZNF300	nc|ENSG00000145908|Q96RE9-4|ZNF300	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	509.2843933105469	2	509.2844	1016.55425	0.34019	0.00017325	0.057477	2.9272E-05	0.39766	0.00020252	509.2843476134995	76.147	1.0315	76.186	75.908	76.94	0.03923					106	48	3	0	0	0	0.23216	1	18231	18231		14.838	0	1	3135000			25807	3268	17137	17302	34740	34740					0.04663224728756177
YPVVEIREL	9	Unmodified	_YPVVEIREL_					0	0	0		ENST00000378037.9_1_13:53030708-53035053:+|nuORF	ENST00000378037.9_1_13:53030708-53035053:+|nuORF	ENST00000378037.9_1_13:53030708-53035053:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.3162841796875	2	559.316232	1116.61791	0.4021	0.0002249	-0.066324	-3.7096E-05	0.33578	0.00018781	559.3160136577093	60.801	0.67054	60.875	60.689	61.36	0.073418					44	22	3	0	0	0	0.010553	1	13475	13475		65.474	27.298	1	342240			25808	6260	17138	17303	34741	34741					0.06426585165854704
YPVVVGAEI	9	Unmodified	_YPVVVGAEI_					0	0	0		ENST00000395474.7_2_3:49053065-49053377:+|nuORF	ENST00000395474.7_2_3:49053065-49053377:+|nuORF	ENST00000395474.7_2_3:49053065-49053377:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	473.7657165527344	2	473.765843	945.517133	0.31145	0.00014755	0.20789	9.849E-05	0.51933	0.00024604	473.76579188815464	80.911	0.34412	80.935	80.82	81.164	0.023605					18	11	2	0	0	0	0.25209	1	19595	19595		12.532	0	1	110970			25809	6334	17139	17304	34742	34742					0.04219553183008884
YPWKAGSPFL	10	Unmodified	_YPWKAGSPFL_					0	0	0		ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant;ENSG00000141579|ENST00000269394|ZNF750	ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	583.3080444335938	2	583.305667	1164.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.73	1	106.73	106.23	107.23	0								0	0	0	0.33892	1	27529	27529		1.4819	0.28856	1				25810	3070	17140	17305	34743	34743					0.02106619856999714
YPWKKEFRSIK	11	Unmodified	_YPWKKEFRSIK_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	494.61297607421875	3	494.613633	1480.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.02	1	114.02	113.52	114.52	0								0	0	0	0.34185	1	29153	29153		0.094841	0	1				25811	3693	17141	17306	34744	34744					0.09789274202353226
YPWSIPFTL	9	Unmodified	_YPWSIPFTL_					0	0	0		ENSG00000147697|ENST00000276708|GSDMC	ENSG00000147697|ENST00000276708|GSDMC	ENSG00000147697|ENST00000276708|GSDMC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2952270507812	2	562.294768	1122.57498	0.46252	0.00026007	0.10283	5.7822E-05	0.56535	0.00031789	562.2947086842831	99.934	0.60886	99.934	99.828	100.44	0					67	33	3	0	0	0	0.092418	1	25527	25527		34.102	13.649	1	182760			25812	3341	17142	17307	34745	34745					0.01859815108446128
YPWSIPFTL	9	Unmodified	_YPWSIPFTL_					0	0	0		ENSG00000147697|ENST00000276708|GSDMC	ENSG00000147697|ENST00000276708|GSDMC	ENSG00000147697|ENST00000276708|GSDMC	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	562.2951049804688	2	562.294768	1122.57498	0.55963	0.00031468	0.21238	0.00011942	0.77201	0.0004341	562.294771734518	99.899	0.46661	99.942	99.872	100.34	0.042839					55	26	3	0	0	0	0.12809	1	25348	25348		26.884	6.43	1	167540			25813	3341	17142	17307	34746	34746					0.01859815108446128
YPYEHSYGL	9	Unmodified	_YPYEHSYGL_					0	0	0		nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-3|ATL2	nc|ENSG00000119787|Q8NHH9-3|ATL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.753662109375	2	564.753464	1127.49238	0.1485	8.3866E-05	-0.0073186	-4.1332E-06	0.14118	7.9733E-05	564.7534036077021	48.879	0.83109	48.879	48.483	49.314	0					62	28	3	0	0	0	0.0046476	2	9973	9923;9973		85.357	62.208	1	220330			25814	2089	17143	17308	34747;34748	34748					-0.06627126690386831
YPYEHSYGL	9	Unmodified	_YPYEHSYGL_					0	0	0		nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-3|ATL2	nc|ENSG00000119787|Q8NHH9-3|ATL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.75341796875	2	564.753464	1127.49238	0.13734	7.7563E-05	-0.21411	-0.00012092	-0.076769	-4.3356E-05	564.7533655935805	48.701	0.74599	48.777	48.439	49.185	0.076607					55	25	3	0	0	0	0.0053304	3	9825	9764;9818;9825		81.613	61.159	1	256550			25815	2089	17143	17308	34749;34750;34751	34751					-0.06627126690386831
YPYFNPWNC	9	Unmodified	_YPYFNPWNC_					0	0	0		ENST00000495668.1_1_11:5664055-5664936:+|nuORF;ENSG00000258659|ENST00000429814|TRIM34;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22	ENST00000495668.1_1_11:5664055-5664936:+|nuORF;nc|ENSG00000132274|Q8IYM9-2|TRIM22	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2509155273438	2	602.250034	1202.48552	0.63591	0.00038298	0.44267	0.0002666	1.0786	0.00064958	602.2501895692664	96.751	0.72491	96.791	96.611	97.336	0.039772					97	34	5	0	0	0	0.34646	1	24509	24509		0.6015	0	1	1364500			25816	5706;2560	17144	17309	34752	34752					-0.10762762842591655
YPYLTSPEF	9	Unmodified	_YPYLTSPEF_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7670288085938	2	558.76604	1115.51753	0.90389	0.00050506	0.94505	0.00052806	1.8489	0.0010331	558.7664191367983	81.358	0.95696	81.358	81.023	81.98	0					83	32	3	0	0	0	0.083504	1	19890	19890		36.044	1.9418	1	485290	+		25817	10495	17145	17310	34753	34753					-0.03561071887793332
YPYLTSPEF	9	Unmodified	_YPYLTSPEF_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.7667846679688	2	558.76604	1115.51753	0.67251	0.00037578	1.1537	0.00064463	1.8262	0.0010204	558.7665687351877	81.375	0.85571	81.397	81.049	81.905	0.021866					75	30	3	0	0	0	0.083504	1	19763	19763		36.044	9.1605	1	566670	+		25818	10495	17145	17310	34754	34754					-0.03561071887793332
YPYQYPGPPP	10	Unmodified	_YPYQYPGPPP_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7786865234375	2	589.779482	1177.54441	0.12476	7.3583E-05	-1.7988	-0.0010609	-1.674	-0.0009873	589.7783840333999	72.847	0.31042	72.847	72.692	73.002	0					17	10	2	0	0	0	0.40223	1	17280	17280		11.64	0.81637	1	179210			25819	1555	17146	17311	34755	34755					-0.03725963276610855
YPYQYPGPPP	10	Unmodified	_YPYQYPGPPP_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.778564453125	2	589.779482	1177.54441	0.30555	0.00018021	-2.1221	-0.0012516	-1.8166	-0.0010714	589.7780852005717	72.815	0.35214	72.868	72.656	73.008	0.052567					21	11	3	0	0	0	0.40223	1	17096	17096		11.64	3.047	1	107000			25820	1555	17146	17311	34756	34756					-0.03725963276610855
YPYYASVHE	9	Unmodified	_YPYYASVHE_					0	0	0		ENST00000444292.2_1_X:95228690-95228804:-|nuORF	ENST00000444292.2_1_X:95228690-95228804:-|nuORF	ENST00000444292.2_1_X:95228690-95228804:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.75244140625	2	564.753464	1127.49238	0.1485	8.3866E-05	-0.0073186	-4.1332E-06	0.14118	7.9733E-05	564.7534036077021	48.879	0.83109	48.879	48.483	49.314	0					62	28	3	0	0	0	0.29576	1	10063	10063		7.2892	0.56607	1	220330			25821	6535	17147	17312	34757	34757					-0.06627126690386831
YQCDATEHSF	10	Unmodified	_YQCDATEHSF_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	400.8257141113281	3	400.825722	1199.45534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.412	1	18.412	17.912	18.912	0								0	0	0	0.34018	1	1119	1119		0	0	1		+		25822	10841	17148	17313	34758	34758					-0.13641166298475582
YQCFEWFRF	9	Unmodified	_YQCFEWFRF_					0	0	0			REV__ENST00000574992.5_1_17:79873485-79873644:-|nuORF	REV__ENST00000574992.5_1_17:79873485-79873644:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	442.864990234375	3	442.530581	1324.56991	0.20952	9.2718E-05	-0.57793	-0.00025575	-0.36842	-0.00016304	442.53033565440046	37.95	0.55143	38.034	37.805	38.356	0.084476					41	19	3	0	0	0	0.34446	1	6583	6583		0.86438	0.3012	1	85043	+		25823	12529	17149	17314	34759	34759					-0.07938812025872721
YQELQVLF	8	Unmodified	_YQELQVLF_					0	0	0		ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF;VPS37B|p.Y87D|1|0.24|ENSG00000139722|chr12:122870914-122870914|A/C|missense_variant	ENSG00000139722|ENST00000267202|VPS37B	ENSG00000139722|ENST00000267202|VPS37B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.8055419921875	2	520.276575	1038.5386	0.43379	0.00022569	-0.061325	-3.1906E-05	0.37246	0.00019378	520.2764678097219	96.591	1.0578	96.591	96.38	97.438	0					115	49	4	0	0	0	0.43379	1	24487	24487		21.747	3.6003	1	2964200			25824	2984	17150	17315	34760	34760					0.020869382116870838
YQERGLEV	8	Unmodified	_YQERGLEV_					0	0	0		ENST00000595406.1_1_19:22321288-22321780:+|nuORF	ENST00000595406.1_1_19:22321288-22321780:+|nuORF	ENST00000595406.1_1_19:22321288-22321780:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2528991699219	2	497.253631	992.49271	-0.44382	-0.00022069	-0.20496	-0.00010192	-0.64878	-0.00032261	497.25343488162065	42.051	0.68929	42.051	41.856	42.545	0					46	23	3	0	0	0	0.42348	1	7896	7896		23.148	0	1	238360			25825	7283	17151	17316	34761	34761					-0.003837069705241447
YQERGLEV	8	Unmodified	_YQERGLEV_					0	0	0		ENST00000595406.1_1_19:22321288-22321780:+|nuORF	ENST00000595406.1_1_19:22321288-22321780:+|nuORF	ENST00000595406.1_1_19:22321288-22321780:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.253173828125	2	497.253631	992.49271	-0.25779	-0.00012818	-0.054863	-2.7281E-05	-0.31265	-0.00015547	497.25357086901766	41.975	0.53787	42.064	41.893	42.431	0.089767					44	20	3	0	0	0	0.20402	1	7746	7746		42.095	0	1	194070			25826	7283	17151	17316	34762	34762					-0.003837069705241447
YQFNTNVVF	9	Unmodified	_YQFNTNVVF_					0	0	0		ENSG00000169814|ENST00000643237|BTD;nc|ENSG00000169814|P43251|BTD;nc|ENSG00000169814|P43251-3|BTD;nc|ENSG00000169814|P43251-2|BTD	ENSG00000169814|ENST00000643237|BTD	ENSG00000169814|ENST00000643237|BTD	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2960205078125	2	566.277106	1130.53966	0.42505	0.00024069	-0.68536	-0.0003881	-0.26032	-0.00014741	566.7768311684497	100.65	0.33318	100.69	100.58	100.91	0.042839					26	19	2	0	0	0	0.29576	1	25616	25616		7.2892	2.3922	1	66893			25827	4359	17152	17317	34763	34763					-0.020388474193850925
YQGMCRNACR	10	Unmodified	_YQGMCRNACR_					0	0	0		ENSG00000215545|ENST00000400549|DEFB116	ENSG00000215545|ENST00000400549|DEFB116	ENSG00000215545|ENST00000400549|DEFB116	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.25341796875	2	601.254802	1200.49505	0.43003	0.00025856	-1.8698	-0.0011242	-1.4398	-0.00086568	601.2536135093684	96.205	0.27045	96.205	96.048	96.318	0					21	11	3	0	0	0	0.45794	1	24388	24388		3.2813	0.54611	1	127130			25828	5580	17153	17318	34764	34764					-0.09717641100405672
YQGQFLDV	8	Unmodified	_YQGQFLDV_					0	0	0			REV__nc|ENSG00000172046|O94966-4|USP19	REV__nc|ENSG00000172046|O94966-4|USP19	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.2225036621094	2	485.23745	968.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.97	1	91.97	91.47	92.47	0								0	0	0	0.38822	1	23104	23104		2.0598	0.21551	1		+		25829	10276	17154	17319	34765	34765					-0.025144943735313063
YQGRLSAQAK	10	Unmodified	_YQGRLSAQAK_					0	0	0			REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13	REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.3065185546875	2	561.306729	1120.59891	-0.076842	-4.3132E-05	0.056847	3.1909E-05	-0.019995	-1.1223E-05	561.3064437836556	30.538	0.39691	30.538	30.382	30.779	0					36	21	2	0	0	0	0.46827	1	4461	4461		1.3295	0	1	33110	+		25830	9847	17155	17320	34766	34766					0.04343048594773791
YQGRLSAQAK	10	Unmodified	_YQGRLSAQAK_					0	0	0			REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13	REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	561.306729	1120.59891	0.014448	8.1095E-06	0.086883	4.8768E-05	0.10133	5.6877E-05	561.306538650839	30.507	0.4128	30.582	30.402	30.815	0.075403	0.022253	1.2797E-05	NaN	1.3295	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25133	+		25831	9847	17155	17320							0.04343048594773791
YQLGVQFLV	9	Unmodified	_YQLGVQFLV_					0	0	0		ENST00000314475.6_1_11:120197881-120197932:+|nuORF	ENST00000314475.6_1_11:120197881-120197932:+|nuORF	ENST00000314475.6_1_11:120197881-120197932:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.787841796875	2	533.800217	1065.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.1	1	53.1	52.6	53.6	0								0	0	0	0.25361	1	11256	11256		8.5933	0.68312	1				25832	6013	17156	17321	34767	34767					0.055712174827021954
YQLLVNICEQ	10	Unmodified	_YQLLVNICEQ_					0	0	0			REV__ENST00000454844.1_1_10:46187592-46195676:+|nuORF	REV__ENST00000454844.1_1_10:46187592-46195676:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3262939453125	2	611.810456	1221.60636	0.4701	0.00028761	1.416	0.00086635	1.8861	0.001154	611.8113193364819	80.098	0.59803	80.124	79.911	80.509	0.026436					55	21	4	0	0	0	0.31794	1	19278	19278		3.5965	0.31518	1	483300	+		25833	10295	17157	17322	34768	34768					0.004420200801860119
YQLNKRLP	8	Unmodified	_YQLNKRLP_					0	0	0		nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB;ENST00000493538.5_1_2:25803688-25875529:-|nuORF;ENST00000472690.5_1_2:25819066-25872751:-|nuORF;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB	nc|ENSG00000138101|O60941-6|DTNB	nc|ENSG00000138101|O60941-6|DTNB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	516.303466796875	2	516.303458	1030.59236	-0.15404	-7.953E-05	0.13493	6.9665E-05	-0.019106	-9.8643E-06	516.3034400282041	40.663	0.87209	40.752	40.493	41.365	0.089645					80	32	4	0	0	0	0.53858	1	7423	7423		2.3027	0	1	574290			25834	2892	17158	17323	34769	34769					0.07829155434069435
YQLRVQEYL	9	Unmodified	_YQLRVQEYL_					0	0	0			REV__SEC14L4|p.C271Y|1|0.17|ENSG00000133488|chr22:30491933-30491933|C/T|missense_variant	REV__SEC14L4|p.C271Y|1|0.17|ENSG00000133488|chr22:30491933-30491933|C/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.149169921875	3	404.552151	1210.63462	-0.27275	-0.00011034	0.22904	9.2659E-05	-0.043711	-1.7683E-05	404.55214706800024	43.178	0.3855	43.268	43.009	43.395	0.089764					20	13	2	0	0	0	0.25952	1	8051	8051		1.1933	0	1	18158	+		25835	12981	17159	17324	34770	34770					0.037730860518195186
YQLRVQEYL	9	Unmodified	_YQLRVQEYL_					0	0	0			REV__SEC14L4|p.C271Y|1|0.17|ENSG00000133488|chr22:30491933-30491933|C/T|missense_variant	REV__SEC14L4|p.C271Y|1|0.17|ENSG00000133488|chr22:30491933-30491933|C/T|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	404.552151	1210.63462	0.033505	1.3554E-05	-0.53311	-0.00021567	-0.49961	-0.00020212	404.55190806454243	43.211	0.26399	43.211	43.063	43.327	0	-0.028654	-0.00048761	NaN	1.1933	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52036	+		25836	12981	17159	17324							0.037730860518195186
YQLSTRHFS	9	Unmodified	_YQLSTRHFS_					0	0	0			REV__ENST00000486360.1_1_1:203032958-203044890:+|nuORF	REV__ENST00000486360.1_1_1:203032958-203044890:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.2932739257812	2	569.78563	1137.55671	-0.11202	-6.3829E-05	0.11887	6.7729E-05	0.0068437	3.8994E-06	569.7857451502294	33.214	0.53812	33.214	33.01	33.548	0					28	20	2	0	0	0	0.30397	1	5221	5221		6.2058	0	1	56427	+		25837	9338	17160	17325	34771	34771					-0.0065692681357631955
YQNKGRIS	8	Unmodified	_YQNKGRIS_					0	0	0			REV__nc|ENSG00000105982|Q9H0A6-2|RNF32	REV__nc|ENSG00000105982|Q9H0A6-2|RNF32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	483.2610778808594	2	483.261791	964.509028	-0.47258	-0.00022838	0.19376	9.3638E-05	-0.27882	-0.00013474	483.2618838332606	24.979	1.9818	24.979	24.712	26.694	0					333	152	4	0	0	0	0.54097	1	3241	3241		0.69038	0	1	1090700	+		25838	12771	17161	17326	34772	34772					0.025354189862468957
YQPFSYKLC	9	Unmodified	_YQPFSYKLC_					0	0	0		AMY2A|p.V80F|1|0.39|ENSG00000243480|chr1:103618023-103618023|G/T|missense_variant	AMY2A|p.V80F|1|0.39|ENSG00000243480|chr1:103618023-103618023|G/T|missense_variant	AMY2A|p.V80F|1|0.39|ENSG00000243480|chr1:103618023-103618023|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7657470703125	2	574.775885	1147.53722	0.042814	2.4609E-05	0.86005	0.00049433	0.90286	0.00051894	574.7763982420261	22.173	0.22452	22.275	22.166	22.39	0.10178					20	15	2	0	0	0	0.34704	1	1926	1926		0.52476	0	1	17455			25839	32	17162	17327	34773	34773					-0.030650191486984113
YQPGDHLGVF	10	Unmodified	_YQPGDHLGVF_					0	0	0		nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1	nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-3|NOS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7750244140625	2	566.774731	1131.53491	-0.029451	-1.6692E-05	1.8713	0.0010606	1.8418	0.0010439	567.2779056912769	105.92	0.29305	105.92	105.74	106.03	0					35	27	2	0	0	0	0.40987	1	27271	27271		10.824	1.4408	1	76320			25840	1030	17163	17328	34774	34774					-0.025597315621553207
YQPGDHLGVF	10	Unmodified	_YQPGDHLGVF_					0	0	0		nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1	nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-3|NOS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7743530273438	2	566.774731	1131.53491	0.25055	0.00014201	1.4718	0.00083418	1.7223	0.00097618	567.2776184461718	106.24	0.4563	106.27	106.02	106.48	0.029739					69	51	2	0	0	0	0.40987	1	27245	27245		10.824	1.4408	1	105000			25841	1030	17163	17328	34775	34775					-0.025597315621553207
YQPKKKKIL	9	Unmodified	_YQPKKKKIL_					0	0	0			REV__ENST00000233055.8_1_2:224741890-224742040:-|nuORF	REV__ENST00000233055.8_1_2:224741890-224742040:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.7528686523438	2	573.373884	1144.73321	0.18615	0.00010673	0.059463	3.4094E-05	0.24561	0.00014083	573.373841096688	58.574	0.49335	58.645	58.476	58.969	0.070477					34	16	3	0	0	0	0.25875	1	12854	12854		1.8442	0	1	330590	+		25842	11194	17164	17329	34776	34776					0.16663734087524062
YQPKPDDI	8	Unmodified	_YQPKPDDI_					0	0	0		tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.2421875	2	488.242732	974.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.501	1	39.589	39.089	40.089	0.088562								0	0	0	0.38822	1	7016	7016		2.3027	0.4585	1				25843	13734	17165	17330	34777	34777					-0.017345117191098325
YQQRQSVIFHK	11	Unmodified	_YQQRQSVIFHK_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	478.5920104980469	3	478.59312	1432.75753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.201	1	65.201	64.701	65.701	0								0	0	0	0.33897	1	14946	14946		1.1098	0.41209	1				25844	2609	17166	17331	34778	34778					0.05846342503082269
YQSQPQVLS	9	Unmodified	_YQSQPQVLS_					0	0	0			REV__nc|ENSG00000105639|P52333-4|JAK3	REV__nc|ENSG00000105639|P52333-4|JAK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2677001953125	2	525.266739	1048.51892	-0.060373	-3.1712E-05	0.76895	0.00040391	0.70858	0.00037219	525.2671888348845	45.981	0.61145	45.981	45.808	46.42	0					44	20	3	0	0	0	0.28919	1	9141	9141		8.1555	0	1	290660	+		25845	8549	17167	17332	34779	34779					-0.00339437799038933
YQSSEKSQF	9	Unmodified	_YQSSEKSQF_					0	0	0		APLF|p.L72F|1|0.28|ENSG00000169621|chr2:68502776-68502776|C/T|missense_variant	APLF|p.L72F|1|0.28|ENSG00000169621|chr2:68502776-68502776|C/T|missense_variant	APLF|p.L72F|1|0.28|ENSG00000169621|chr2:68502776-68502776|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2385864257812	2	552.253828	1102.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.884	1	66.949	66.449	67.449	0.065071								0	0	0	0.19984	1	15310	15310		18.146	1.9972	1				25846	43	17168	17333	34780	34780					-0.05404332041325688
YQSVIYPFL	9	Unmodified	_YQSVIYPFL_					0	0	0		ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.288818359375	2	565.30005	1128.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.834	1	97.834	97.334	98.334	0								0	0	0	0.25361	1	24887	24887		8.5933	0	1				25847	4814	17169	17334	34781	34781					0.026397977628448643
YQTFPIQDPD	10	Unmodified	_YQTFPIQDPD_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.3323974609375	2	612.282586	1222.55062	0.087696	5.3694E-05	-2.9263	-0.0017917	-2.8386	-0.001738	612.2803332557538	78.506	0.34604	78.506	78.335	78.681	0					25	11	3	0	0	0	0.31616	1	19032	19032		10.074	0	1	176990			25848	5394	17170	17335	34782	34782					-0.05175489835778535
YQTLSAKLLW	10	Unmodified	_YQTLSAKLLW_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENST00000496575.1_1_22:31289665-31289989:+|nuORF;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3323364257812	2	611.845156	1221.67576	0.3456	0.00021145	-0.49826	-0.00030486	-0.15267	-9.3409E-05	611.8451054560367	78.531	0.28349	78.561	78.428	78.712	0.030151					15	9	2	0	0	0	0.37232	1	18881	18881		14.838	3.3436	1	139540			25849	4993	17171	17336	34783	34783					0.07378847091285934
YQTMYILVL	9	Unmodified	_YQTMYILVL_					0	0	0		DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.307861328125	2	572.309561	1142.60457	0.35783	0.00020479	-2.6681	-0.001527	-2.3103	-0.0013222	572.3076921143162	96.469	0.54362	96.469	96.134	96.678	0					50	24	3	0	0	0	0.19398	1	24497	24497		19.257	0	1	877410			25850	301	17172	17337	34784	34784					0.03897011062258571
YQTPRLWLF	9	Unmodified	_YQTPRLWLF_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000467275.1_1_3:112256557-112257010:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.3323364257812	2	612.332216	1222.64988	0.084827	5.1942E-05	0.27526	0.00016855	0.36009	0.0002205	612.3323197599825	78.432	1.4139	78.432	78.176	79.59	0					135	48	4	0	0	0	0.0010793	5	18986	18944;18986;19075;19137;19194		122.18	93.098	1	4283800			25851	3228	17173	17338	34785;34786;34787;34788;34789	34786					0.0474599763963397
YQTPRLWLF	9	Unmodified	_YQTPRLWLF_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000467275.1_1_3:112256557-112257010:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.3323974609375	2	612.332216	1222.64988	0.30037	0.00018393	0.015709	9.6191E-06	0.31608	0.00019355	612.3321631613545	78.431	1.6318	78.461	78.171	79.803	0.030159					155	57	5	0	0	0	0.0042703	3	18837	18789;18837;18976		99.755	70.674	1	4225900			25852	3228	17173	17338	34790;34791;34792	34791					0.0474599763963397
YQTVLTIAQG	10	Unmodified	_YQTVLTIAQG_					0	0	0			REV__ENSG00000105671|ENST00000247003|DDX49	REV__ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.2977905273438	2	547.298039	1092.58152	-0.2157	-0.00011805	-0.025842	-1.4143E-05	-0.24154	-0.0001322	547.2979031251044	22.948	0.33782	22.948	22.84	23.178	0					50	31	2	0	0	0	0.4753	1	2320	2320		0	0	1	21962	+		25853	8552	17174	17339	34793	34793					0.03893708269106355
YQVLHNLVF	9	Unmodified	_YQVLHNLVF_					0	0	0			REV__ENST00000355899.7_1_X:114884577-114884703:+|nuORF	REV__ENST00000355899.7_1_X:114884577-114884703:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7991943359375	2	566.811116	1131.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.1	1	105.1	104.6	105.6	0								0	0	0	0.2722	1	27064	27064		4.756	0.81161	1		+		25854	11500	17175	17340	34794	34794					0.04714022231269155
YQVLHNLVF	9	Unmodified	_YQVLHNLVF_					0	0	0			REV__ENST00000355899.7_1_X:114884577-114884703:+|nuORF	REV__ENST00000355899.7_1_X:114884577-114884703:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7992553710938	2	566.811116	1131.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.38	1	105.38	104.88	105.88	0								0	0	0	0.2722	1	27144	27144		4.756	0.42677	1		+		25855	11500	17175	17340	34795	34795					0.04714022231269155
YQWYALDQ	8	Unmodified	_YQWYALDQ_					0	0	0		ENST00000511909.5_1_4:122053805-122071269:-|nuORF;ENSG00000050730|ENST00000057513|TNIP3	ENST00000511909.5_1_4:122053805-122071269:-|nuORF	ENST00000511909.5_1_4:122053805-122071269:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.247802734375	2	543.748182	1085.48181	-0.048835	-2.6554E-05	0.11084	6.0269E-05	0.062006	3.3716E-05	543.7484069461439	29.824	0.46822	29.9	29.691	30.16	0.075403					52	28	3	0	0	0	0.54097	1	4073	4073		0.69038	0	1	37905			25856	584	17176	17341	34796	34796					-0.057511093448283646
YQYSGLEI	8	Unmodified	_YQYSGLEI_					0	0	0			REV__nc|ENSG00000163291|Q6TCH7-4|PAQR3	REV__nc|ENSG00000163291|Q6TCH7-4|PAQR3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	486.7373962402344	2	486.737283	971.460012	-0.038034	-1.8512E-05	0.38131	0.0001856	0.34328	0.00016709	486.7373642261601	71.981	1.0002	72.036	71.566	72.566	0.055939					58	35	2	0	0	0	0.51967	1	16798	16798		10.074	1.4806	1	161740	+		25857	9931	17177	17342	34797	34797					-0.026859140933765957
YRADIFSVI	9	Unmodified	_YRADIFSVI_					0	0	0		CFAP54|p.C2067F|1|0.18|ENSG00000188596|chr12:96691246-96691246|G/T|missense_variant	CFAP54|p.C2067F|1|0.18|ENSG00000188596|chr12:96691246-96691246|G/T|missense_variant	CFAP54|p.C2067F|1|0.18|ENSG00000188596|chr12:96691246-96691246|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2590942382812	2	542.295299	1082.57605	0.22637	0.00012276	0.16556	8.9783E-05	0.39193	0.00021254	542.2954715214684	52.994	0.54709	52.994	52.788	53.335	0					61	21	4	0	0	0	0.21603	1	11223	11223		20.454	0	1	495730			25858	127	17178	17343	34798	34798					0.038060294773458736
YRADIFSVI	9	Unmodified	_YRADIFSVI_					0	0	0		CFAP54|p.C2067F|1|0.18|ENSG00000188596|chr12:96691246-96691246|G/T|missense_variant	CFAP54|p.C2067F|1|0.18|ENSG00000188596|chr12:96691246-96691246|G/T|missense_variant	CFAP54|p.C2067F|1|0.18|ENSG00000188596|chr12:96691246-96691246|G/T|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.259033203125	2	542.295299	1082.57605	0.44191	0.00023965	0.15354	8.3264E-05	0.59545	0.00032291	542.2952989655683	52.94	0.50327	53.006	52.802	53.306	0.06543					56	22	3	0	0	0	0.23975	1	11060	11060		14.838	0	1	363250			25859	127	17178	17343	34799	34799					0.038060294773458736
YRAPHAGGAL	10	Unmodified	_YRAPHAGGAL_					0	0	0		ENSG00000185155|ENST00000366810|MIXL1;nc|ENSG00000185155|Q9H2W2-2|MIXL1	ENSG00000185155|ENST00000366810|MIXL1	ENSG00000185155|ENST00000366810|MIXL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	506.7713317871094	2	506.769783	1011.52501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.209	1	83.209	82.709	83.709	0								0	0	0	0.33215	1	20440	20440		9.3831	2.0939	1				25860	5013	17179	17344	34800	34800					0.019711252231331855
YRAQSMPVF	9	Unmodified	_YRAQSMPVF_					0	0	0		nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6-3|KIAA0586	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.2679443359375	2	549.773677	1097.5328	0.27133	0.00014917	-4.3677	-0.0024012	-4.0964	-0.0022521	550.2718112992208	49.903	0.58685	49.903	49.707	50.294	0					45	20	3	0	0	0	0.24929	1	10295	10295		9.3831	1.473	1	119340			25861	7469	17180	17345	34801	34801					-0.012064835716046218
YRAVLQDI	8	Unmodified	_YRAVLQDI_					0	0	0		ENST00000548432.5_1_12:82832322-82872800:+|nuORF;ENST00000547357.5_1_12:82752311-82853681:+|nuORF;ENSG00000127720|ENST00000248306|METTL25	ENST00000548432.5_1_12:82832322-82872800:+|nuORF	ENST00000548432.5_1_12:82832322-82872800:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	489.27447509765625	2	489.274367	976.53418	0.20496	0.00010028	0.0017229	8.4297E-07	0.20669	0.00010113	489.2741732703134	52.547	0.33974	52.614	52.412	52.752	0.067173					13	11	2	0	0	0	0.53118	1	10968	10968		7.2892	0.56607	1	68129			25862	2373	17181	17346	34802	34802					0.04497473788796924
YRAVLQDI	8	Unmodified	_YRAVLQDI_					0	0	0		ENST00000548432.5_1_12:82832322-82872800:+|nuORF;ENST00000547357.5_1_12:82752311-82853681:+|nuORF;ENSG00000127720|ENST00000248306|METTL25	ENST00000548432.5_1_12:82832322-82872800:+|nuORF	ENST00000548432.5_1_12:82832322-82872800:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	489.274367	976.53418	0.097818	4.786E-05	-0.45201	-0.00022116	-0.35419	-0.0001733	489.27418388782274	52.573	0.39236	52.573	52.396	52.788	0	-0.020699	-0.00020286	NaN	7.2892	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69173			25863	2373	17181	17346							0.04497473788796924
YRDDFYDRL	9	Unmodified	_YRDDFYDRL_					0	0	0		ENSG00000125970|ENST00000246194|RALY	ENSG00000125970|ENST00000246194|RALY	ENSG00000125970|ENST00000246194|RALY	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	631.79443359375	2	631.793652	1261.57275	0.17107	0.00010808	0.082397	5.2058E-05	0.25346	0.00016014	631.7936601016589	61.78	1.3871	61.78	61.582	62.969	0					109	57	3	0	0	0	0.32375	1	14122	14122		3.5965	0	1	1001100			25864	2324	17182	17347	34803	34803					-0.04757265367334185
YRDFSTFLF	9	Unmodified	_YRDFSTFLF_					0	0	0		ENST00000326764.9_2_19:54972187-54972391:+|nuORF	ENST00000326764.9_2_19:54972187-54972391:+|nuORF	ENST00000326764.9_2_19:54972187-54972391:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.287353515625	2	598.292756	1194.57096	0.48433	0.00028977	-2.8942	-0.0017316	-2.4098	-0.0014418	598.2904196326525	93.743	1.1858	93.743	92.793	93.979	0					90	45	2	0	0	0	0.19398	2	23519	23519;23563		19.257	2.1441	1	2022900			25865	6044	17183	17348	34804;34805	34804					-0.01854274385300414
YRDIDRLCNN	10	Unmodified	_YRDIDRLCNN_					0	0	0			REV__ENST00000515753.1_1_10:69833717-69833930:-|nuORF	REV__ENST00000515753.1_1_10:69833717-69833930:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3033447265625	2	641.303861	1280.59317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.735	1	18.735	18.235	19.235	0								0	0	0	0.33984	1	1191	1191		0.40072	0	1		+		25866	12282	17184	17349	34806	34806					-0.03590417979171434
YRDLKLDNLL	10	Unmodified	_YRDLKLDNLL_					0	0	0		nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;ENSG00000160447|ENST00000291906|PKN3;nc|ENSG00000065243|Q16513-3|PKN2;ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-5|PKN2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.5749206542969	3	421.574955	1261.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.065	1	41.154	40.654	41.654	0.089645								0	0	0	0.33894	1	7486	7486		1.4551	0	1				25867	678	17185	17350	34807	34807					0.08265330631661527
YRDSIEAL	8	Unmodified	_YRDSIEAL_					0	0	0			REV__ENSG00000170788|ENST00000372202|DYDC1	REV__ENSG00000170788|ENST00000372202|DYDC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.7480163574219	2	483.748182	965.481811	0.07099	3.4341E-05	0.15051	7.281E-05	0.2215	0.00010715	483.74816841623806	38.645	0.47802	38.732	38.461	38.939	0.08688					30	17	2	0	0	0	0.35682	1	6734	6734		15.847	0	1	56537	+		25868	10224	17186	17351	34808	34808					-0.002311093448156498
YREIHDTTL	9	Unmodified	_YREIHDTTL_					0	0	0			REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant	REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7913208007812	2	574.290745	1146.56694	-0.51233	-0.00029422	-0.27868	-0.00016004	-0.79101	-0.00045427	574.2907400473684	41.9	1.6847	41.9	41.52	43.205	0					73	59	2	0	0	0	0.32375	1	7793	7793		3.5965	0	1	51705	+		25869	7874	17187	17352	34809	34809					-0.00048363879000135057
YREIHDTTL	9	Unmodified	_YREIHDTTL_					0	0	0			REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant	REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2924194335938	2	574.290745	1146.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.79	1	40.79	40.29	41.29	0								0	0	0	0.25287	1	7530	7530		8.7454	1.1365	1		+		25870	7874	17187	17352	34810	34810					-0.00048363879000135057
YREIHDTTL	9	Unmodified	_YREIHDTTL_					0	0	0			REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant	REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.291259765625	2	574.290745	1146.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.966	1	40.966	40.466	41.466	0								0	0	0	0.23204	1	7583	7583		13.042	1.4022	1		+		25871	7874	17187	17352	34811	34811					-0.00048363879000135057
YREIHDTTL	9	Unmodified	_YREIHDTTL_					0	0	0			REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant	REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.291015625	2	574.290745	1146.56694	0.16034	9.2081E-05	-0.030796	-1.7686E-05	0.12954	7.4395E-05	574.2910473762183	35.506	4.4992	35.585	35.279	39.778	0.078827					435	173	5	0	0	0	0.27332	2	6345	6345;6601		10.074	0	1	7724500	+		25872	7874	17187	17352	34812;34813	34812					-0.00048363879000135057
YREMMFGL	8	Unmodified	_YREMMFGL_					0	0	0			REV__ENST00000566942.1_1_1:111198432-111198462:-|nuORF	REV__ENST00000566942.1_1_1:111198432-111198462:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7418212890625	2	523.743531	1045.47251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.885	1	38.972	38.472	39.472	0.08688								0	0	0	0.38822	1	6830	6830		2.3027	0.24298	1		+		25873	12505	17188	17353	34814	34814					-0.04840917226329111
YREQIGDPLG	10	Unmodified	_YREQIGDPLG_					0	0	0			REV__tr|U7SM38|U7SM38_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02037PE=4SV=1	REV__tr|U7SM38|U7SM38_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02037PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.29052734375	2	574.290745	1146.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.845	1	45.845	45.345	46.345	0								0	0	0	0.33905	1	9058	9058		1.3295	0.25807	1		+		25874	13081	17189	17354	34815	34815					-0.00048363879000135057
YREQIGDPLG	10	Unmodified	_YREQIGDPLG_					0	0	0			REV__tr|U7SM38|U7SM38_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02037PE=4SV=1	REV__tr|U7SM38|U7SM38_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02037PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2900390625	2	574.290745	1146.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.323	1	41.413	40.913	41.913	0.089764								0	0	0	0.33905	1	7563	7563		1.3295	0.25807	1		+		25875	13081	17189	17354	34816	34816					-0.00048363879000135057
YRFGEGEEKF	10	Unmodified	_YRFGEGEEKF_					0	0	0		ENST00000233809.8_2_2:217528903-217529134:+|nuORF	ENST00000233809.8_2_2:217528903-217529134:+|nuORF	ENST00000233809.8_2_2:217528903-217529134:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	631.2992553710938	2	631.296027	1260.5775	0.32985	0.00020824	4.2088	0.002657	4.5386	0.0028652	631.2984594537585	73.686	0.39606	73.739	73.51	73.906	0.052574					28	14	3	0	0	0	0.42898	1	17384	17384		13.615	5.4593	1	153930			25876	5817	17190	17355	34817	34817					-0.042363812245639565
YRFGEGEEKF	10	Unmodified	_YRFGEGEEKF_					0	0	0		ENST00000233809.8_2_2:217528903-217529134:+|nuORF	ENST00000233809.8_2_2:217528903-217529134:+|nuORF	ENST00000233809.8_2_2:217528903-217529134:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	631.296027	1260.5775	-0.026303	-1.6605E-05	4.9796	0.0031436	4.9533	0.003127	631.2991085307071	73.742	0.37201	73.742	73.515	73.887	0	0.0013001	0.00041597	NaN	13.615	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169040			25877	5817	17190	17355							-0.042363812245639565
YRFWILPQL	9	Unmodified	_YRFWILPQL_					0	0	0		nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-3|PCNX1	nc|ENSG00000100731|Q96RV3-3|PCNX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.852294921875	2	618.350409	1234.68626	-0.097397	-6.0225E-05	0.39094	0.00024174	0.29354	0.00018151	618.3505100963107	87.573	0.50378	87.573	87.291	87.795	0					44	18	4	0	0	0	0.23216	1	21771	21771		14.838	8.6325	1	402290			25878	1216	17191	17356	34818	34818					0.07830874536375632
YRFWILPQL	9	Unmodified	_YRFWILPQL_					0	0	0		nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-3|PCNX1	nc|ENSG00000100731|Q96RV3-3|PCNX1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	618.350409	1234.68626	-0.16195	-0.00010014	0.28504	0.00017625	0.12309	7.611E-05	618.3504491239606	87.537	0.48186	87.567	87.285	87.767	0.030037	-0.0026771	-7.608E-05	NaN	14.838	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352070			25879	1216	17191	17356							0.07830874536375632
YRHSWREF	8	Unmodified	_YRHSWREF_					0	0	0			REV__nc|ENSG00000129292|A8MW92-2|PHF20L1	REV__nc|ENSG00000129292|A8MW92-2|PHF20L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7857666015625	2	590.785964	1179.55738	0.60567	0.00035782	0.54102	0.00031963	1.1467	0.00067745	590.7861196655789	100.23	0.49763	100.27	100.04	100.54	0.042831					68	26	3	0	0	0	0.53026	1	25418	25418		7.9102	0	1	607640	+		25880	9033	17192	17357	34819	34819					-0.025220873738817318
YRHSWREF	8	Unmodified	_YRHSWREF_					0	0	0			REV__nc|ENSG00000129292|A8MW92-2|PHF20L1	REV__nc|ENSG00000129292|A8MW92-2|PHF20L1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	590.785964	1179.55738	0.50035	0.0002956	0.48711	0.00028778	0.98745	0.00058337	590.7861495699416	100.27	0.53674	100.27	100.04	100.57	0	-0.00027196	-2.4851E-05	NaN	7.9102	85	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514390	+		25881	9033	17192	17357							-0.025220873738817318
YRHSWREF	8	Unmodified	_YRHSWREF_					0	0	0			REV__nc|ENSG00000129292|A8MW92-2|PHF20L1	REV__nc|ENSG00000129292|A8MW92-2|PHF20L1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	590.785964	1179.55738	0.60567	0.00035782	0.54102	0.00031963	1.1467	0.00067745	590.7861196655789	100.23	0.49763	100.27	100.04	100.54	0.042831	0.00027196	3.8849E-05	NaN	7.9102	68	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607640	+		25882	9033	17192	17357							-0.025220873738817318
YRHVIYAPS	9	Unmodified	_YRHVIYAPS_					0	0	0		nc|ENSG00000290503|Q9HBA9|FOLH1B;nc|ENSG00000086205|Q04609-10|FOLH1;nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;PACS1-FOLH1|1|fusion	nc|ENSG00000290503|Q9HBA9|FOLH1B	nc|ENSG00000290503|Q9HBA9|FOLH1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2672729492188	2	553.293091	1104.57163	0.20523	0.00011355	-4.2671	-0.002361	-4.0619	-0.0022474	553.2907135438454	35.108	0.22921	35.108	34.975	35.205	0					10	7	2	0	0	0	0.25875	1	5807	5807		1.8442	0.19162	1	13976			25883	975	17193	17358	34820	34820					0.023525650544115706
YRHVPLQSL	9	Unmodified	_YRHVPLQSL_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.81396484375	2	556.81419	1111.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.225	1	92.225	91.725	92.725	0								0	0	0	0.24978	1	23181	23181		9.3831	1.7742	1				25884	3568	17194	17359	34821	34821					0.06248540462820529
YRHVPLQSL	9	Unmodified	_YRHVPLQSL_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.8142700195312	2	556.81419	1111.61383	0.67484	0.00037576	-1.3323	-0.00074187	-0.6575	-0.00036611	556.8132057399558	92.162	0.29347	92.199	92.077	92.371	0.03653					11	9	2	0	0	0	0.27929	1	23003	23003		9.3831	1.7742	1	62371			25885	3568	17194	17359	34822	34822					0.06248540462820529
YRIEKDKL	8	Unmodified	_YRIEKDKL_					0	0	0			REV__ENST00000571212.1_1_16:68037572-68037671:-|nuORF	REV__ENST00000571212.1_1_16:68037572-68037671:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.80859375	2	532.808574	1063.60259	0.26015	0.00013861	-0.17788	-9.4774E-05	0.082271	4.3835E-05	532.8083820643353	34.854	0.60321	34.931	34.733	35.336	0.076244					53	24	3	0	0	0	0.53614	1	5592	5592		3.9444	0	1	204710	+		25886	12521	17195	17360	34823	34823					0.07333718368658992
YRIHFRNKL	9	Unmodified	_YRIHFRNKL_					0	0	0			REV__CNTFR|p.C164F|1|0.35|ENSG00000122756|chr9:34557639-34557639|C/A|missense_variant	REV__CNTFR|p.C164F|1|0.35|ENSG00000122756|chr9:34557639-34557639|C/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2433776855469	3	416.243763	1245.70946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.868	1	46.868	46.368	47.368	0								0	0	0	0.28073	1	9368	9368		2.9952	0.49676	1		+		25887	7825	17196	17361	34824	34824					0.09643313373703677
YRIIEARGR	9	Unmodified	_YRIIEARGR_					0	0	0			REV__ENSG00000163106|ENST00000295256|HPGDS	REV__ENSG00000163106|ENST00000295256|HPGDS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3305053710938	2	567.330539	1132.64652	0.2232	0.00012663	-0.32185	-0.0001826	-0.098654	-5.5969E-05	567.330282121425	86.461	2.8884	86.489	85.666	88.554	0.027367					440	114	5	0	0	0	0.30397	1	21365	21365		6.2058	0	1	7811600	+		25888	9923	17197	17362	34825	34825					0.08550747585650242
YRILRIIK	8	Unmodified	_YRILRIIK_					0	0	0			REV__ENSG00000188997|ENST00000340067|KCTD21	REV__ENSG00000188997|ENST00000340067|KCTD21	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.861083984375	2	537.860944	1073.70733	0.47505	0.00025551	-0.029148	-1.5678E-05	0.4459	0.00023983	537.8608239947503	111.85	0.2043	111.87	111.79	111.99	0.014595					34	26	2	0	0	0	0.53423	1	28522	28522		5.2307	0	1	793060	+		25889	10788	17198	17363	34826	34826					0.17342884635877454
YRINTDAQEL	10	Unmodified	_YRINTDAQEL_					0	0	0		nc|ENSG00000075539|O94915-2|FRYL	nc|ENSG00000075539|O94915-2|FRYL	nc|ENSG00000075539|O94915-2|FRYL	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.21881103515625	3	408.206932	1221.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.511	1	31.511	31.011	32.011	0								0	0	0	0.33734	1	4746	4746		3.3196	0	1				25890	7461	17199	17364	34827	34827					-0.002969961958569911
YRIWFNFC	8	Unmodified	_YRIWFNFC_					0	0	0		nc|ENSG00000183765|O96017-6|CHEK2	nc|ENSG00000183765|O96017-6|CHEK2	nc|ENSG00000183765|O96017-6|CHEK2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.768798828125	2	574.770937	1147.52732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.25	1	100.29	99.793	100.79	0.042839								0	0	0	0.38822	1	25467	25467		2.3027	0.65011	1				25891	7573	17200	17365	34828	34828					-0.0405416236342262
YRKKNYHW	8	Unmodified	_YRKKNYHW_					0	0	0			REV__nc|ENSG00000109572|P51790-2|CLCN3	REV__nc|ENSG00000109572|P51790-2|CLCN3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8132934570312	2	597.811982	1193.60941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.678	1	43.678	43.178	44.178	0								0	0	0	0.38822	1	8404	8404		0.69038	0.088878	1		+		25892	12773	17201	17366	34829	34829					0.020350760398969214
YRKLADKLE	9	Unmodified	_YRKLADKLE_					0	0	0			REV__nc|ENSG00000101557|P54578-2|USP14	REV__nc|ENSG00000101557|P54578-2|USP14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.3275756835938	2	568.327131	1134.63971	0.15836	8.9999E-05	0.26424	0.00015017	0.42259	0.00024017	568.3273897473184	36.114	0.23029	36.196	36.081	36.312	0.081715					11	8	2	0	0	0	0.33978	1	6006	6006		1.4819	0	1	15249	+		25893	8431	17202	17367	34830	34830					0.07777389914440391
YRKSENTA	8	Unmodified	_YRKSENTA_					0	0	0		IFIT5|p.H389Y|1|0.3|ENSG00000152778|chr10:89418364-89418364|C/T|missense_variant	IFIT5|p.H389Y|1|0.3|ENSG00000152778|chr10:89418364-89418364|C/T|missense_variant	IFIT5|p.H389Y|1|0.3|ENSG00000152778|chr10:89418364-89418364|C/T|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	484.742919921875	2	484.743431	967.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.789	1	29.865	29.365	30.365	0.075403								0	0	0	0.38822	1	4113	4113		2.5775	0	1				25894	7359	17203	17368	34831	34831					-0.012728776303447376
YRKVLPALVIP	11	Unmodified	_YRKVLPALVIP_					0	0	0		ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.908203125	2	634.908091	1267.80163	0.2441	0.00015498	0.033624	2.1348E-05	0.27772	0.00017633	634.9085039481217	108.95	0.28855	108.96	108.88	109.17	0.019402					70	43	3	0	0	0	0.41369	1	27900	27900		1.1933	0.66858	1	1621600			25895	3367	17204	17369	34832	34832					0.17843978667337979
YRLCDSFGEL	10	Unmodified	_YRLCDSFGEL_					0	0	0			REV__ENST00000455858.2_2_12:117467953-117468139:+|nuORF	REV__ENST00000455858.2_2_12:117467953-117468139:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.7791748046875	2	601.779156	1201.54376	0.31004	0.00018658	-0.15309	-9.2127E-05	0.15695	9.4449E-05	601.7790745950954	49.426	3.0019	49.426	48.123	51.124	0					274	104	4	0	0	0	0.35104	1	9990	9990		17.113	2.2746	1	563460	+		25896	11944	17205	17370	34833	34833					-0.04895125987945903
YRLELLEQM	9	Unmodified	_YRLELLEQM_					0	0	0		nc|ENSG00000104218|Q1MSJ5-2|CSPP1;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1	nc|ENSG00000104218|Q1MSJ5-2|CSPP1	nc|ENSG00000104218|Q1MSJ5-2|CSPP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8126220703125	2	597.812999	1193.61144	-0.51833	-0.00030987	0.46368	0.0002772	-0.054649	-3.267E-05	597.813574678419	41.221	0.3846	41.221	41.075	41.459	0					19	13	2	0	0	0	0.33978	1	7622	7622		1.4819	0	1	45164			25897	1401	17206	17371	34834	34834					0.022383239428108936
YRLESPIIL	9	Unmodified	_YRLESPIIL_					0	0	0			REV__nc|ENSG00000014138|Q14181-2|POLA2	REV__nc|ENSG00000014138|Q14181-2|POLA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.3267822265625	2	552.326599	1102.63865	0.63436	0.00035037	-0.17724	-9.7893E-05	0.45712	0.00025248	552.3266212950903	70.285	2.6145	70.285	69.991	72.605	0					242	93	5	0	0	0	0.11547	1	16665	16665		29.082	2.8134	1	16853000	+		25898	7991	17207	17372	34835	34835					0.09143175545546
YRLKKRRK	8	Unmodified	_YRLKKRRK_					0	0	0		nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.3807373046875	2	574.380366	1146.74618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.39	1	109.39	108.89	109.89	0								0	0	0	0.38822	1	28149	28149		2.3027	0	1				25899	5293	17208	17373	34836	34836					0.17867609990253186
YRLLLKRL	8	Unmodified	_YRLLLKRL_					0	0	0		ENST00000379868.5_1_9:32491415-32526182:-|nuORF;nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	ENST00000379868.5_1_9:32491415-32526182:-|nuORF	ENST00000379868.5_1_9:32491415-32526182:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.3795776367188	2	537.860944	1073.70733	0.47502	0.00025549	0.45162	0.00024291	0.92664	0.0004984	537.8609521136628	112.16	0.081551	112.17	112.14	112.23	0.014595					13	9	2	0	0	0	0.3576	1	28595	28595		5.2307	0	1	270810			25900	1549	17209	17374	34837	34837					0.1734288463590019
YRMKMLQPF	9	Unmodified	_YRMKMLQPF_					0	0	0			REV__nc|ENSG00000100353|O15371-2|EIF3D	REV__nc|ENSG00000100353|O15371-2|EIF3D	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.5064697265625	3	405.212195	1212.61476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.253	1	70.253	69.753	70.753	0								0	0	0	0.25287	1	16483	16483		8.7454	0	1		+		25901	8388	17210	17375	34838	34838					0.01695295515833095
YRNICIKVF	9	Unmodified	_YRNICIKVF_					0	0	0			REV__ENST00000605778.1_1_7:35737925-35738120:+|nuORF	REV__ENST00000605778.1_1_7:35737925-35738120:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.822265625	2	578.320794	1154.62703	0.22653	0.00013101	-0.080016	-4.6275E-05	0.14652	8.4733E-05	578.3206485732105	86.492	1.2259	86.492	85.605	86.831	0					85	48	2	0	0	0	0.29105	1	21362	21362		7.9102	1.7044	1	502780	+		25902	12638	17211	17376	34839	34839					0.055906552505121
YRNICIKVF	9	Unmodified	_YRNICIKVF_					0	0	0			REV__ENST00000605778.1_1_7:35737925-35738120:+|nuORF	REV__ENST00000605778.1_1_7:35737925-35738120:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3209228515625	2	578.320794	1154.62703	0.37728	0.00021819	-0.071842	-4.1548E-05	0.30544	0.00017664	578.320677221397	86.551	1.9141	86.579	85.666	87.58	0.027573					143	78	3	0	0	0	0.3182	1	21247	21247		4.3292	0.73274	1	541340	+		25903	12638	17211	17376	34840	34840					0.055906552505121
YRNICIKVF	9	Unmodified	_YRNICIKVF_					0	0	0			REV__ENST00000605778.1_1_7:35737925-35738120:+|nuORF	REV__ENST00000605778.1_1_7:35737925-35738120:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	578.320794	1154.62703	0.22653	0.00013101	-0.080016	-4.6275E-05	0.14652	8.4733E-05	578.3206485732105	86.492	1.2259	86.492	85.605	86.831	0	-0.043493	-6.911E-06	NaN	7.9102	85	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502780	+		25904	12638	17211	17376							0.055906552505121
YRNISLLL	8	Unmodified	_YRNISLLL_					0	0	0			REV__nc|ENSG00000119523|Q9H553-2|ALG2	REV__nc|ENSG00000119523|Q9H553-2|ALG2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.30010986328125	2	496.300384	990.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.628	1	99.671	99.171	100.17	0.042839								0	0	0	0.38822	1	25276	25276		5.7604	0	1		+		25905	8856	17212	17377	34841	34841					0.09054637202575577
YRPFGMVR	8	Unmodified	_YRPFGMVR_					0	0	0			REV__ENST00000366962.7_1_1:213189068-213189146:-|nuORF	REV__ENST00000366962.7_1_1:213189068-213189146:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2720336914062	2	513.271104	1024.52766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.392	1	19.488	18.988	19.988	0.095232								0	0	0	0.38822	1	1267	1267		0.69038	0	1		+		25906	11553	17213	17378	34842	34842					0.01637257356446753
YRQHVKMSII	10	Unmodified	_YRQHVKMSII_					0	0	0			REV__tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	REV__tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	425.5729675292969	3	425.57278	1273.69651	0.82504	0.00035111	-0.1485	-6.3199E-05	0.67653	0.00028791	425.5726810296186	65.336	1.5758	65.336	65.112	66.688	0					148	58	4	0	0	0	0.40917	2	14970	14970;15012		10.899	2.4547	1	2376800	+		25907	13246	17214	17379	34843;34844	34843					0.07061114199314034
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.300048828125	3	539.984228	1616.93085	0.57203	0.00030889	1.1972	0.00064645	1.7692	0.00095534	539.9846635279074	102.07	0.85634	102.12	101.82	102.67	0.042656					124	67	3	0	0	0	0.31101	1	26153	26153		0.094841	0.094841	1	163250			25908	4633	17215	17380	34845	34845					0.14706566122708864
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	539.984228	1616.93085	0.33343	0.00018005	1.4715	0.00079459	1.8049	0.00097464	539.9847933523886	102.12	0.87988	102.12	101.83	102.71	0	0.0036394	0.00017824	NaN	0.094841	121	61	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242010			25909	4633	17215	17380							0.14706566122708864
YRRGLQAI	8	Unmodified	_YRRGLQAI_					0	0	0		ENST00000554429.5_1_14:45565874-45579180:+|nuORF;ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39	ENST00000554429.5_1_14:45565874-45579180:+|nuORF	ENST00000554429.5_1_14:45565874-45579180:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	488.7874755859375	2	488.787976	975.561398	-0.23487	-0.0001148	-0.093988	-4.594E-05	-0.32886	-0.00016074	488.7878539471139	30.417	0.58957	30.417	30.243	30.832	0					47	32	2	0	0	0	0.54097	1	4450	4450		0.69038	0	1	26663			25910	5016	17216	17381	34846	34846					0.07264002119836732
YRRGLQAI	8	Unmodified	_YRRGLQAI_					0	0	0		ENST00000554429.5_1_14:45565874-45579180:+|nuORF;ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39	ENST00000554429.5_1_14:45565874-45579180:+|nuORF	ENST00000554429.5_1_14:45565874-45579180:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	488.787976	975.561398	-0.20496	-0.00010018	-0.51999	-0.00025416	-0.72495	-0.00035435	488.7877117875125	30.331	0.37506	30.407	30.28	30.655	0.075403	-0.0051781	-0.00020413	NaN	0.69038	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24053			25911	5016	17216	17381							0.07264002119836732
YRRGPAQA	8	Unmodified	_YRRGPAQA_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	459.1722106933594	2	459.74885	917.483148	-0.10624	-4.8844E-05	1.5725	0.00072294	1.4662	0.0006741	459.7507184984087	24.781	0.26774	24.781	24.6	24.867	0					23	18	2	0	0	0	0.3576	1	2797	2797		0.79363	0	1	15739	+		25912	8252	17217	17382	34847	34847					0.021105695346022912
YRRGPAQA	8	Unmodified	_YRRGPAQA_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	459.74885	917.483148	-0.16712	-7.6833E-05	1.6745	0.00076984	1.5074	0.000693	459.7509569474334	24.824	0.31251	24.92	24.776	25.088	0.096073	0.06939	3.4019E-05	NaN	0.79363	42	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12796	+		25913	8252	17217	17382							0.021105695346022912
YRRHFLRV	8	Unmodified	_YRRHFLRV_					0	0	0		ENST00000561380.1_1_14:103805131-103805697:+|nuORF	ENST00000561380.1_1_14:103805131-103805697:+|nuORF	ENST00000561380.1_1_14:103805131-103805697:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7235107421875	2	573.835791	1145.65703	0.52115	0.00029905	-1.545	-0.00088658	-1.0239	-0.00058753	573.8352169428485	55.188	0.30257	55.188	55.015	55.318	0					13	11	2	0	0	0	0.3576	1	11863	11863		4.756	0.81161	1	43286			25914	7154	17218	17383	34848	34848					0.09002775030717203
YRRIQYMT	8	Unmodified	_YRRIQYMT_					0	0	0		ENST00000548860.5_1_12:49210766-49210967:+|nuORF	ENST00000548860.5_1_12:49210766-49210967:+|nuORF	ENST00000548860.5_1_12:49210766-49210967:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.7670288085938	2	565.792401	1129.57025	0.40689	0.00023021	2.7303	0.0015448	3.1372	0.001775	565.7957124483295	55.319	0.46201	55.384	55.242	55.704	0.065128					31	17	3	0	0	0	0.3576	1	11849	11849		4.3292	2.0265	1	89528			25915	7090	17219	17384	34849	34849					0.010646076940020066
YRRLPPRCGF	10	Unmodified	_YRRLPPRCGF_					0	0	0		nc|ENSG00000050767|Q86Y22-2|COL23A1	nc|ENSG00000050767|Q86Y22-2|COL23A1	nc|ENSG00000050767|Q86Y22-2|COL23A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8766784667969	3	422.229237	1263.66588	0.36919	0.00015588	4.0712	0.001719	4.4404	0.0018749	422.23068975164426	49.645	0.64919	49.645	49.48	50.129	0					35	22	2	0	0	0	0.31816	1	10333	10333		3.3196	1.5774	1	60515			25916	7452	17220	17385	34850	34850					0.04459380604885155
YRRVMLDNF	9	Unmodified	_YRRVMLDNF_					0	0	0		ENSG00000083812|ENST00000196482|ZNF324	ENSG00000083812|ENST00000196482|ZNF324	ENSG00000083812|ENST00000196482|ZNF324	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.20989990234375	3	405.209731	1212.60736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.584	1	69.584	69.084	70.084	0								0	0	0	0.25992	1	16280	16280		4.5289	0	1				25917	935	17221	17386	34851	34851					0.009562792397900921
YRSVEVLL	8	Unmodified	_YRSVEVLL_					0	0	0			REV__ENSG00000100288|ENST00000406938|CHKB	REV__ENSG00000100288|ENST00000406938|CHKB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.78448486328125	2	489.784567	977.554582	0.32955	0.00016141	-0.020651	-1.0114E-05	0.3089	0.0001513	489.78450585159214	62.478	0.79429	62.478	62.175	62.969	0					48	28	2	0	0	0	0.53118	1	14201	14201		7.2892	0	1	168920	+		25918	8377	17222	17387	34852	34852					0.06490644448626881
YRYFNPRVT	9	Unmodified	_YRYFNPRVT_					0	0	0		ENST00000528812.5_1_8:11660522-11660831:+|nuORF	ENST00000528812.5_1_8:11660522-11660831:+|nuORF	ENST00000528812.5_1_8:11660522-11660831:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8668212890625	3	405.88049	1214.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.193	1	39.282	38.782	39.782	0.088562								0	0	0	0.28418	1	6923	6923		2.2828	0.030046	1				25919	7014	17223	17388	34853	34853					0.02091638974457055
YRYQKLQK	8	Unmodified	_YRYQKLQK_					0	0	0		ENSG00000154997|ENST00000388975|SEPTIN14	ENSG00000154997|ENST00000388975|SEPTIN14	ENSG00000154997|ENST00000388975|SEPTIN14	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.822021484375	2	563.822015	1125.62948	0.0020219	1.14E-06	-0.2508	-0.0001414	-0.24877	-0.00014026	563.8217476755298	43.428	0.29764	43.517	43.361	43.658	0.088924					20	10	2	0	0	0	0.54097	1	8237	8237		0.69038	0	1	111440			25920	3575	17224	17389	34854	34854					0.07168826979818732
YSAAAAAAAAA	11	Unmodified	_YSAAAAAAAAA_					0	0	0		ENST00000510826.1_1_6:17290237-17292347:+|nuORF;nc|ENSG00000112183|Q9BX46-5|RBM24;nc|ENSG00000112183|Q9BX46-2|RBM24;ENSG00000112183|ENST00000379052|RBM24	ENST00000510826.1_1_6:17290237-17292347:+|nuORF	ENST00000510826.1_1_6:17290237-17292347:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	454.2478942871094	2	454.727249	907.439946	-0.14629	-6.6522E-05	-0.17709	-8.0527E-05	-0.32338	-0.00014705	454.7270817045242	32.723	0.27953	32.797	32.712	32.992	0.07378					14	12	2	0	0	0	0.31102	1	5038	5038		0	0	1	15032			25921	1747	17225	17390	34855	34855					-0.01747665033371959
YSAAESATSTM	11	Unmodified	_YSAAESATSTM_					0	0	0			REV__ENST00000584212.1_1_17:17997264-18001751:+|nuORF	REV__ENST00000584212.1_1_17:17997264-18001751:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.7362670898438	2	559.737154	1117.45975	-0.13071	-7.3163E-05	-0.50958	-0.00028523	-0.64029	-0.0003584	559.7366362091293	24.758	0.32347	24.758	24.544	24.867	0					27	22	2	0	0	0	0.41892	1	2810	2810		0	0	1	26724	+		25922	8621	17226	17391	34856	34856					-0.09427701875574712
YSCCLFFFF	9	Unmodified	_YSCCLFFFF_					0	0	0		ENST00000292114.7_1_17:26689075-26689240:+|nuORF	ENST00000292114.7_1_17:26689075-26689240:+|nuORF	ENST00000292114.7_1_17:26689075-26689240:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7650146484375	2	588.748282	1175.48201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.286	1	82.286	81.786	82.786	0								0	0	0	0.23452	1	20159	20159		12.532	1.4171	1				25923	5950	17227	17392	34857	34857					-0.09871148940828789
YSCLMPLTIE	10	Unmodified	_YSCLMPLTIE_					0	0	0			REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2832641601562	2	585.282686	1168.55082	0.49931	0.00029224	-0.046701	-2.7334E-05	0.45261	0.0002649	585.2827251241589	19.002	0.41788	19.092	18.86	19.278	0.089705					86	48	2	0	0	0	0.4753	1	1137	1137		0	0	1	31220	+		25924	10807	17228	17393	34858	34858					-0.026715294317909866
YSCNPWAK	8	Unmodified	_YSCNPWAK_					0	0	0			REV__ENST00000356495.4_1_1:207103472-207103649:-|nuORF	REV__ENST00000356495.4_1_1:207103472-207103649:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	484.7182312011719	2	484.71837	967.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.322	1	91.322	90.822	91.822	0								0	0	0	0.38822	1	22906	22906		0.79363	0	1		+		25925	11506	17229	17394	34859	34859					-0.06282703559850233
YSCQNCEI	8	Unmodified	_YSCQNCEI_					0	0	0			REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	480.1849670410156	2	480.183503	958.352453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.28	1	76.28	75.78	76.78	0								0	0	0	0.38822	1	18328	18328		11.64	3.7301	1		+		25926	13319	17230	17395	34860	34860					-0.12838950290768025
YSCQNCEI	8	Unmodified	_YSCQNCEI_					0	0	0			REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.1857604980469	2	480.183503	958.352453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.226	1	76.265	75.765	76.765	0.03923								0	0	0	0.38822	1	18153	18153		11.64	5.8799	1		+		25927	13319	17230	17395	34861	34861					-0.12838950290768025
YSCQNCEI	8	Unmodified	_YSCQNCEI_					0	0	0			REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	480.1853332519531	2	480.183503	958.352453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.327	1	76.366	75.866	76.866	0.03923								0	0	0	0.38822	1	18184	18184		11.64	3.7301	1		+		25928	13319	17230	17395	34862	34862					-0.12838950290768025
YSDDFEDE	8	Unmodified	_YSDDFEDE_					0	0	0		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	510.248779296875	2	510.177452	1018.34035	0.11474	5.8537E-05	-0.8958	-0.00045702	-0.78106	-0.00039848	510.17703098251036	73.765	0.2588	73.765	73.661	73.92	0					12	8	2	0	0	0	0.3576	1	17546	17546		2.5775	0	1	90519			25929	2721	17231	17396	34863	34863					-0.16808572228615049
YSDFYEAATL	10	Unmodified	_YSDFYEAATL_					0	0	0			REV__ENSG00000182223|ENST00000327939|ZAR1	REV__ENSG00000182223|ENST00000327939|ZAR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.2643432617188	2	590.263862	1178.51317	0.40743	0.00024049	-0.24292	-0.00014339	0.1645	9.71E-05	590.2633107295966	61.543	1.0604	61.543	61.361	62.421	0					82	51	2	0	0	0	0.42901	2	13855	13855;13903		8.7454	2.115	1	775200	+		25930	10556	17232	17397	34864;34865	34864					-0.06894581101369113
YSDFYEAATL	10	Unmodified	_YSDFYEAATL_					0	0	0			REV__ENSG00000182223|ENST00000327939|ZAR1	REV__ENSG00000182223|ENST00000327939|ZAR1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8046264648438	2	590.263862	1178.51317	0.40743	0.00024049	-0.24292	-0.00014339	0.1645	9.71E-05	590.2633107295966	61.543	1.0604	61.543	61.361	62.421	0					82	51	2	0	0	0	0.31667	1	13814	13814		8.7454	0.58988	1	775200	+		25931	10556	17232	17397	34866	34866					-0.06894581101369113
YSDFYEAATL	10	Unmodified	_YSDFYEAATL_					0	0	0			REV__ENSG00000182223|ENST00000327939|ZAR1	REV__ENSG00000182223|ENST00000327939|ZAR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.2637939453125	2	590.263862	1178.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.687	1	61.761	61.261	62.261	0.073421								0	0	0	0.3327	1	13733	13733		8.7454	2.0222	1		+		25932	10556	17232	17397	34867	34867					-0.06894581101369113
YSDGVELLQM	10	Unmodified	_YSDGVELLQM_					0	0	0		ENSG00000084444|ENST00000197268|FAM234B	ENSG00000084444|ENST00000197268|FAM234B	ENSG00000084444|ENST00000197268|FAM234B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7742919921875	2	577.773539	1153.53253	0.66057	0.00038166	0.22044	0.00012736	0.88101	0.00050902	577.7738821910153	82.128	1.9996	82.128	81.81	83.809	0					221	69	5	0	0	0	0.35104	1	20420	20420		17.113	0.96379	1	8841800			25933	947	17233	17398	34868	34868					-0.03809948082130177
YSDGVELLQM	10	Unmodified	_YSDGVELLQM_					0	0	0		ENSG00000084444|ENST00000197268|FAM234B	ENSG00000084444|ENST00000197268|FAM234B	ENSG00000084444|ENST00000197268|FAM234B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7740478515625	2	577.773539	1153.53253	0.40118	0.00023179	0.47456	0.00027419	0.87574	0.00050598	577.7740626485098	82.099	2.322	82.121	81.846	84.168	0.021866					266	82	5	0	0	0	0.29844	1	20259	20259		22.736	2.2827	1	10383000			25934	947	17233	17398	34869	34869					-0.03809948082130177
YSDHTLPME	9	Unmodified	_YSDHTLPME_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.2561645507812	2	546.736957	1091.45936	0.59677	0.00032627	-0.27429	-0.00014997	0.32247	0.00017631	546.7369578320244	54.945	0.25035	54.945	54.735	54.986	0					10	8	2	0	0	0	0.23598	1	11830	11830		15.847	5.6638	1	73689		+	25935	228	17234	17399	34870	34870					-0.082710768047491
YSDIQEQFQ	9	Unmodified	_YSDIQEQFQ_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7728271484375	2	579.259111	1156.50367	0.41078	0.00023795	-1.4087	-0.00081599	-0.9979	-0.00057804	579.258179540381	61.511	0.75462	61.585	61.388	62.142	0.073421					52	43	2	0	0	0	0.25504	1	13644	13644		4.756	0	1	1079500	+		25936	10747	17235	17400	34871	34871					-0.06832349386922942
YSDIQEQFQ	9	Unmodified	_YSDIQEQFQ_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	579.259111	1156.50367	0.38093	0.00022066	-0.92978	-0.00053858	-0.54885	-0.00031792	579.258384213681	61.583	0.50942	61.583	61.361	61.87	0	-0.00075065	0.00025513	NaN	12.532	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910200	+		25937	10747	17235	17400							-0.06832349386922942
YSDLALFVDG	10	Unmodified	_YSDLALFVDG_					0	0	0		sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.8143920898438	2	550.268947	1098.52334	0.47927	0.00026373	1.9159	0.0010542	2.3951	0.001318	550.7720223907664	47.185	0.88517	47.185	46.878	47.763	0					47	29	3	0	0	0	0.31643	1	9618	9618		9.3831	2.66	1	59130			25938	13389	17236	17401	34872	34872					-0.0219797337615546
YSDLVLFFL	9	Unmodified	_YSDLVLFFL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.802734375	2	558.802426	1115.5903	0.13599	7.5994E-05	0.29867	0.0001669	0.43467	0.00024289	558.8025761116355	105.84	0.26253	105.84	105.63	105.89	0					93	25	5	0	0	0	0.29105	1	27225	27225		7.9102	0	1	3588500			25939	1745	17237	17402	34873	34873					0.03712681905631143
YSDLVLFFL	9	Unmodified	_YSDLVLFFL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.8026733398438	2	558.802426	1115.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.92	1	106.92	106.42	107.42	0								0	0	0	0.17567	1	27585	27585		21.747	0	1				25940	1745	17237	17402	34874	34874					0.03712681905631143
YSDSASNYFP	10	Unmodified	_YSDSASNYFP_					0	0	0		nc|ENSG00000211788|A0A0B4J241|TRAV13-1	nc|ENSG00000211788|A0A0B4J241|TRAV13-1	nc|ENSG00000211788|A0A0B4J241|TRAV13-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.29443359375	2	575.738011	1149.46147	0.81979	0.00047198	-0.8437	-0.00048575	-0.023913	-1.3768E-05	575.7372844508907	80.37	0.41766	80.37	80.228	80.646	0					27	14	2	0	0	0	0.31731	1	19655	19655		6.2058	0.47393	1	174860			25941	7598	17238	17403	34875	34875					-0.10728324795286426
YSDYKFPDI	9	Unmodified	_YSDYKFPDI_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;NIPBL-SPEF2|2|fusion	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.2686767578125	2	574.268947	1146.52334	0.29851	0.00017142	-0.53887	-0.00030946	-0.24037	-0.00013804	574.268448723481	61.585	1.9484	61.585	60.834	62.783	0					264	83	4	0	0	0	0.14091	1	13996	13996		25.399	0	1	9751300			25942	3500	17239	17404	34876	34876					-0.044059733761287134
YSEDFSENQF	10	Unmodified	_YSEDFSENQF_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.7397155761719	3	422.503414	1264.48841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.312	1	64.312	63.812	64.812	0								0	0	0	0.33711	1	14675	14675		1.7423	0.52744	1				25943	2865	17240	17405	34877	34877					-0.13325260974761477
YSEDFSENQF	10	Unmodified	_YSEDFSENQF_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.5045471191406	3	422.503414	1264.48841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.19	1	66.257	65.757	66.757	0.066872								0	0	0	0.33156	1	15102	15102		5.7834	1.3773	1				25944	2865	17240	17405	34878	34878					-0.13325260974761477
YSEKFDLN	8	Unmodified	_YSEKFDLN_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.24755859375	2	508.24019	1014.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.72	1	31.794	31.294	32.294	0.073782								0	0	0	0.38719	1	4685	4685		15.847	1.9411	1				25945	5416	17241	17406	34879	34879					-0.04082815581716659
YSEKPDVVF	9	Unmodified	_YSEKPDVVF_					0	0	0			REV__ENSG00000264424|ENST00000255381|MYH4	REV__ENSG00000264424|ENST00000255381|MYH4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	543.2870483398438	2	542.27149	1082.52843	0.44147	0.0002394	-0.089376	-4.8466E-05	0.3521	0.00019093	542.2714173761582	96.591	0.58479	96.591	96.38	96.965	0					59	26	3	0	0	0	0.21398	1	24475	24475		16.942	2.3606	1	845800	+		25946	11118	17242	17407	34880	34880					-0.009536695135238915
YSEMETELRS	10	Unmodified	_YSEMETELRS_					0	0	0			REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	622.8129272460938	2	622.77681	1243.53907	0.29032	0.0001808	0.62033	0.00038633	0.91065	0.00056713	622.7771486113645	54.42	0.58464	54.42	53.867	54.451	0					25	20	2	0	0	0	0.31811	1	11562	11562		2.9952	0.26005	1	113940	+		25947	10535	17243	17408	34881	34881					-0.07296054921403083
YSFECTDGSSF	11	Unmodified	_YSFECTDGSSF_					0	0	0		ENST00000508541.1_1_4:20618510-20620629:+|nuORF;nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2	ENST00000508541.1_1_4:20618510-20620629:+|nuORF	ENST00000508541.1_1_4:20618510-20620629:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7833251953125	2	621.734611	1241.45467	0.16674	0.00010367	-0.077354	-4.8094E-05	0.089389	5.5576E-05	621.7344733462439	70.007	0.77469	70.007	69.672	70.447	0					43	28	2	0	0	0	0.30659	1	16358	16358		12.241	1.4167	1	117210			25948	3236	17244	17409	34882	34882					-0.15640005738168838
YSFEFSKN	8	Unmodified	_YSFEFSKN_					0	0	0			REV__tr|U7SHE2|U7SHE2_FUSNUDUF1934domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02277PE=4SV=1	REV__tr|U7SHE2|U7SHE2_FUSNUDUF1934domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02277PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.25469970703125	2	511.234907	1020.45526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.2	1	73.2	72.7	73.7	0								0	0	0	0.3858	1	17382	17382		18.135	1.0221	1		+		25949	13054	17245	17410	34883	34883					-0.05414798236131446
YSFFFFFL	8	Unmodified	_YSFFFFFL_					0	0	0		ENST00000415128.6_1_6:142623466-142692070:+|nuORF	ENST00000415128.6_1_6:142623466-142692070:+|nuORF	ENST00000415128.6_1_6:142623466-142692070:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.802978515625	2	559.273304	1116.53206	0.44486	0.0002488	1.0395	0.00058135	1.4843	0.00083015	559.2724583489829	106.68	0.079697	106.7	106.65	106.73	0.025711					8	5	2	0	0	0	0.3576	1	27312	27312		2.8892	0	1	25100			25950	6413	17246	17411	34884	34884					-0.02154954949014609
YSFGENDIF	9	Unmodified	_YSFGENDIF_					0	0	0		ENSG00000106384|ENST00000223114|MOGAT3;nc|ENSG00000106384|Q86VF5-3|MOGAT3	ENSG00000106384|ENST00000223114|MOGAT3	ENSG00000106384|ENST00000223114|MOGAT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.7392578125	2	546.237647	1090.46074	-0.16351	-8.9316E-05	-0.16765	-9.1577E-05	-0.33116	-0.00018089	546.2373872775504	26.053	0.42351	26.053	25.881	26.304	0					49	34	2	0	0	0	0.35102	1	3149	3149		0	0	1	18379			25951	1520	17247	17412	34885	34885					-0.080871194443489
YSFLDYVM	8	Oxidation (M)	_YSFLDYVM(Oxidation (M))_		YSFLDYVM(1)		YSFLDYVM(57)	0	0	1		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.233154296875	2	527.233519	1052.45248	0.47878	0.00025243	-0.051877	-2.7351E-05	0.4269	0.00022508	527.2330779015329	82.622	1.2582	82.622	82.142	83.401	0					70	43	2	0	0	0	0.087272	2	20222	20222;20272		56.541	20.075	1	214300			25952	5563	17248	17413	34886;34887	34886		316			-0.07164389685340211
YSFLDYVM	8	Oxidation (M)	_YSFLDYVM(Oxidation (M))_		YSFLDYVM(1)		YSFLDYVM(64)	0	0	1		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	526.7926635742188	2	527.233519	1052.45248	0.76621	0.00040397	-0.56524	-0.00029801	0.20097	0.00010596	527.2332537995394	80.175	0.58237	80.175	79.79	80.372	0					39	19	3	0	0	0	0.18097	1	19521	19521		63.563	23.114	1	364070			25953	5563	17248	17413	34888	34888		316			-0.07164389685340211
YSFLDYVM	8	Oxidation (M)	_YSFLDYVM(Oxidation (M))_		YSFLDYVM(1)		YSFLDYVM(82)	0	0	1		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.2337036132812	2	527.233519	1052.45248	0.2441	0.0001287	0.27387	0.00014439	0.51797	0.00027309	527.2333520013092	82.555	1.4022	82.576	82.069	83.471	0.021744					75	49	2	0	0	0	0.016	3	20069	20069;20120;20180		81.864	41.415	1	304290			25954	5563	17248	17413	34889;34890;34891	34889		316			-0.07164389685340211
YSFLDYVM	8	Oxidation (M)	_YSFLDYVM(Oxidation (M))_		YSFLDYVM(1)		YSFLDYVM(54)	0	0	1		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.7925415039062	2	527.233519	1052.45248	0.45066	0.0002376	-0.47363	-0.00024971	-0.02297	-1.2111E-05	527.2332808811818	80.055	0.42741	80.081	79.823	80.251	0.026428					32	14	3	0	0	0	0.24874	1	19351	19351		53.576	21.459	1	327650			25955	5563	17248	17413	34892	34892		316			-0.07164389685340211
YSFMESFPF	9	Unmodified	_YSFMESFPF_					0	0	0		nc|ENSG00000186471|Q86UN6-2|AKAP14;ENSG00000186471|ENST00000371431|AKAP14	nc|ENSG00000186471|Q86UN6-2|AKAP14	nc|ENSG00000186471|Q86UN6-2|AKAP14	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.764892578125	2	577.746793	1153.47903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.279	1	96.319	95.819	96.819	0.039772								0	0	0	0.25692	1	24258	24258		7.9102	1.7044	1				25956	5078	17249	17414	34893	34893					-0.09156700793982964
YSFPGASC	8	Unmodified	_YSFPGASC_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2;ENST00000474079.1_1_12:124818968-124819707:-|nuORF;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;ENST00000461081.2_1_12:124816664-124819403:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.18121337890625	2	416.170721	830.32689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.27	1	41.36	40.86	41.86	0.089764								0	0	0	0.38822	1	7547	7547		9.3474	3.587	1				25957	5227	17250	17415	34894	34894					-0.09506056750876724
YSFTTTAER	9	Unmodified	_YSFTTTAER_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2568969726562	2	538.256371	1074.49819	0.30168	0.00016238	-0.058812	-3.1656E-05	0.24287	0.00013072	538.2564291774495	37.119	0.50698	37.119	36.962	37.469	0					36	19	3	0	0	0	0.11198	1	6420	6420		29.841	19.017	1	74676			25958	827	17251	17416	34895	34895					-0.036080281787235435
YSFTTTAER	9	Unmodified	_YSFTTTAER_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.2564697265625	2	538.256371	1074.49819	0.45073	0.00024261	-0.21291	-0.0001146	0.23781	0.00012801	538.2562311575633	37.005	0.37703	37.086	36.92	37.297	0.081715					30	13	3	0	0	0	0.19307	1	6278	6278		19.362	5.4559	1	79434			25959	827	17251	17416	34896	34896					-0.036080281787235435
YSGKKYTE	8	Unmodified	_YSGKKYTE_					0	0	0			REV__L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|44|2|anti-sense	REV__L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|44|2|anti-sense	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.24310302734375	2	488.242732	974.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.473	1	34.549	34.049	35.049	0.076244								0	0	0	0.38822	1	5508	5508		0.69038	0	1		+		25960	12694	17252	17417	34897	34897					-0.017345117190984638
YSGPEGSYF	9	Unmodified	_YSGPEGSYF_					0	0	0		nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-2|ITGAV	nc|ENSG00000138448|P06756-2|ITGAV	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	503.7104797363281	2	503.711265	1005.40798	0.48482	0.00024421	-2.1289	-0.0010724	-1.6441	-0.00082816	503.7102463980045	54.131	0.4548	54.196	53.945	54.399	0.065128					26	16	2	0	0	0	0.25979	1	11452	11452		11.64	0.81637	1	107010			25961	2912	17253	17418	34898	34898					-0.09451077507128502
YSHEYPFFS	9	Unmodified	_YSHEYPFFS_					0	0	0			REV__ENST00000401050.7_1_1:53099138-53105680:+|nuORF	REV__ENST00000401050.7_1_1:53099138-53105680:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7548828125	2	588.753464	1175.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.496	1	94.496	93.996	94.996	0								0	0	0	0.22204	1	23871	23871		14.838	4.7643	1		+		25962	11752	17254	17419	34899	34899					-0.08835126690382822
YSHLVGHRR	9	Unmodified	_YSHLVGHRR_					0	0	0		ENSG00000204611|ENST00000600228|ZNF616	ENSG00000204611|ENST00000600228|ZNF616	ENSG00000204611|ENST00000600228|ZNF616	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8065185546875	2	562.807231	1123.59991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.824	1	16.824	16.324	17.324	0								0	0	0	0.29525	1	805	805		0	0	1				25963	5484	17255	17420	34900	34900					0.043053077543845575
YSHLVGHRR	9	Unmodified	_YSHLVGHRR_					0	0	0		ENSG00000204611|ENST00000600228|ZNF616	ENSG00000204611|ENST00000600228|ZNF616	ENSG00000204611|ENST00000600228|ZNF616	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.8074340820312	2	562.807231	1123.59991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.066	1	17.066	16.566	17.566	0								0	0	0	0.29525	1	850	850		0	0	1				25964	5484	17255	17420	34901	34901					0.043053077543845575
YSHPGMSTL	9	Unmodified	_YSHPGMSTL_					0	0	0			REV__ENST00000491144.5_1_3:183852834-183852972:+|nuORF	REV__ENST00000491144.5_1_3:183852834-183852972:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.7314453125	2	496.728935	991.443317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.523	1	59.523	59.023	60.023	0								0	0	0	0.14119	1	13211	13211		26.884	0.54238	1		+		25965	12148	17256	17421	34902	34902					-0.05274738250977862
YSHVTDLRP	9	Unmodified	_YSHVTDLRP_					0	0	0		ENST00000530686.5_1_11:27528423-27661519:+|nuORF;ENST00000501176.6_1_11:27528415-27661519:+|nuORF	ENST00000530686.5_1_11:27528423-27661519:+|nuORF	ENST00000530686.5_1_11:27528423-27661519:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.2621459960938	2	544.28018	1086.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.997	1	37.997	37.497	38.497	0								0	0	0	0.27613	1	6689	6689		3.9444	0	1				25966	6865	17257	17422	34903	34903					0.005996708121529082
YSICTLIFDG	10	Unmodified	_YSICTLIFDG_					0	0	0			REV__ENSG00000197437|ENST00000642119|OR13G1	REV__ENSG00000197437|ENST00000642119|OR13G1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2978515625	2	566.273175	1130.5318	0.20112	0.00011389	-0.26589	-0.00015057	-0.064765	-3.6675E-05	566.7749661003364	79.035	0.7903	79.065	78.787	79.577	0.030159					39	27	2	0	0	0	0.31496	1	18962	18962		13.906	0.86358	1	191930	+		25967	10857	17258	17423	34904	34904					-0.028247427311725914
YSIDRNTDL	9	Unmodified	_YSIDRNTDL_					0	0	0		CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant;CDH7|p.A734Vfs*15|1|0.19|ENSG00000081138|chr18:65880737-65880737|C/-|frameshift_variant;ENSG00000081138|ENST00000397968|CDH7	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.752197265625	2	548.767103	1095.51965	0.45705	0.00025082	-3.1295	-0.0017174	-2.6724	-0.0014665	548.7647268802399	85.78	0.3542	85.78	85.631	85.985	0					17	14	2	0	0	0	0.29576	1	21276	21276		7.2892	0	1	68577			25968	119	17259	17424	34905	34905					-0.024286431500058825
YSIFIDGIF	9	Unmodified	_YSIFIDGIF_					0	0	0			REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2761840820312	2	537.778951	1073.54335	0.034377	1.8487E-05	-3.854	-0.0020726	-3.8197	-0.0020541	537.7770073755448	58.488	0.3882	58.488	58.293	58.682	0					15	12	2	0	0	0	0.2298	1	12909	12909		16.942	1.0951	1	272680	+		25969	13108	17260	17425	34906	34906					0.009518223544546345
YSIGEFEF	8	Unmodified	_YSIGEFEF_					0	0	0		ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772|FPGT	ENSG00000254685|ENST00000370898|FPGT	ENSG00000254685|ENST00000370898|FPGT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.224365234375	2	496.224008	990.433463	0.68723	0.00034102	-0.49884	-0.00024753	0.18839	9.3484E-05	496.2237403728527	70.641	0.86526	70.702	70.425	71.29	0.060562					47	33	2	0	0	0	0.46036	1	16508	16508		18.135	0	1	87096			25970	5694	17261	17426	34907	34907					-0.06213602984712452
YSIIFAASSW	10	Unmodified	_YSIIFAASSW_					0	0	0			REV__nc|ENSG00000136048|Q8N682-2|DRAM1	REV__nc|ENSG00000136048|Q8N682-2|DRAM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.775634765625	2	572.787307	1143.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.415	1	58.486	57.986	58.986	0.070477								0	0	0	0.33156	1	12740	12740		10.074	0	1		+		25971	9234	17262	17427	34908	34908					-0.005976767595711863
YSIKSEEGKSD	11	Unmodified	_YSIKSEEGKSD_					0	0	0			REV__nc|ENSG00000100364|Q6ICG6-3|KIAA0930	REV__nc|ENSG00000100364|Q6ICG6-3|KIAA0930	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7821655273438	2	621.796057	1241.57756	0.16966	0.00010549	1.1935	0.00074211	1.3631	0.0008476	621.7967405236894	70.024	0.44878	70.024	69.85	70.298	0					27	16	2	0	0	0	0.26943	1	16409	16409		21.537	2.28	1	165290	+		25972	8391	17263	17428	34909	34909					-0.03356426015238867
YSIKSEEGKSD	11	Unmodified	_YSIKSEEGKSD_					0	0	0			REV__nc|ENSG00000100364|Q6ICG6-3|KIAA0930	REV__nc|ENSG00000100364|Q6ICG6-3|KIAA0930	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	621.796057	1241.57756	0.16966	0.00010549	1.1935	0.00074211	1.3631	0.0008476	621.7967405236894	70.024	0.44878	70.024	69.85	70.298	0	0.018415	2.0576E-05	NaN	21.537	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165290	+		25973	8391	17263	17428							-0.03356426015238867
YSIKSEEGKSD	11	Unmodified	_YSIKSEEGKSD_					0	0	0			REV__nc|ENSG00000100364|Q6ICG6-3|KIAA0930	REV__nc|ENSG00000100364|Q6ICG6-3|KIAA0930	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	621.796057	1241.57756	0.18221	0.0001133	1.1596	0.00072102	1.3418	0.00083432	621.7967544505848	69.927	0.47146	69.988	69.808	70.279	0.060562	-0.018415	-2.1595E-05	NaN	21.537	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212420	+		25974	8391	17263	17428							-0.03356426015238867
YSILAAFSF	9	Unmodified	_YSILAAFSF_					0	0	0		tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1	tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1	tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.25762939453125	2	509.765843	1017.51713	0.28626	0.00014593	0.61572	0.00031387	0.90199	0.0004598	509.76623427378394	48.002	0.34066	48.002	47.852	48.192	0					17	11	2	0	0	0	0.25051	1	9730	9730		7.9102	2.1497	1	64364			25975	13691	17264	17429	34910	34910					0.009075531829921601
YSILLLLFW	9	Unmodified	_YSILLLLFW_					0	0	0			REV__ENSG00000141194|ENST00000268912|OR4D1	REV__ENSG00000141194|ENST00000268912|OR4D1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.3440551757812	2	584.344261	1166.67397	0.61132	0.00035722	-3.7809	-0.0022093	-3.1695	-0.0018521	584.3426135393637	57.8	0.57094	57.8	57.569	58.14	0					33	19	3	0	0	0	0.2491	1	12747	12747		8.5933	0	1	191380	+		25976	9387	17265	17430	34911	34911					0.09729838073303654
YSINEDLVF	9	Unmodified	_YSINEDLVF_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.2691650390625	2	550.268947	1098.52334	0.25823	0.00014209	0.10215	5.6208E-05	0.36037	0.0001983	550.2690195134645	73.011	0.48903	73.063	72.805	73.294	0.052574					50	16	4	0	0	0	0.10067	1	17204	17204		32.305	0	1	1156700			25977	2237	17266	17431	34912	34912					-0.021979733761327225
YSIPLIEYS	9	Unmodified	_YSIPLIEYS_					0	0	0		ENST00000435041.2_1_6:90038920-90039049:-|nuORF	ENST00000435041.2_1_6:90038920-90039049:-|nuORF	ENST00000435041.2_1_6:90038920-90039049:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.259033203125	2	542.78169	1083.54883	0.6234	0.00033837	-1.6001	-0.00086851	-0.9767	-0.00053013	542.7807853718501	85.265	0.4747	85.265	84.985	85.459	0					29	16	2	0	0	0	0.25174	1	21103	21103		7.2892	2.5332	1	202190			25978	6503	17267	17432	34913	34913					0.010395011462833281
YSIPVFYR	8	Unmodified	_YSIPVFYR_					0	0	0		ENST00000464687.1_1_2:190561047-190571741:+|nuORF	ENST00000464687.1_1_2:190561047-190571741:+|nuORF	ENST00000464687.1_1_2:190561047-190571741:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	522.24267578125	2	522.779285	1043.54402	-0.46848	-0.00024491	-4.2078	-0.0021998	-4.6763	-0.0024447	522.7771225017668	41.747	0.28259	41.837	41.711	41.994	0.089764					13	10	2	0	0	0	0.35759	1	7715	7715		12.532	2.3482	1	30975			25979	6628	17268	17433	34914	34914					0.023986617941545774
YSITICLIDF	10	Unmodified	_YSITICLIDF_					0	0	0			REV__ENSG00000181001|ENST00000641645|OR52N1	REV__ENSG00000181001|ENST00000641645|OR52N1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	594.29248046875	2	594.304475	1186.5944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.13	1	105.17	104.67	105.67	0.034004								0	0	0	0.33156	1	26895	26895		10.074	3.3508	1		+		25980	10519	17269	17434	34915	34915					0.008564033370021207
YSITVAFWL	9	Unmodified	_YSITVAFWL_					0	0	0		ENST00000490857.5_1_2:228211900-228221830:+|nuORF;nc|ENSG00000168958|Q9GZY8-4|MFF;nc|ENSG00000168958|Q9GZY8-5|MFF;nc|ENSG00000168958|Q9GZY8-3|MFF;ENSG00000168958|ENST00000304593|MFF;nc|ENSG00000168958|Q9GZY8|MFF	ENST00000490857.5_1_2:228211900-228221830:+|nuORF	ENST00000490857.5_1_2:228211900-228221830:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2957153320312	2	550.294768	1098.57498	0.52688	0.00028994	-1.7696	-0.00097379	-1.2427	-0.00068385	550.2938212301527	94.074	0.21564	94.074	93.979	94.195	0					17	11	2	0	0	0	0.18364	2	23747	23747;23753		20.454	7.4112	1	139180			25981	4317	17270	17435	34916;34917	34916					0.029638151084100173
YSKFGAMA	8	Unmodified	_YSKFGAMA_					0	0	0		ENST00000443260.1_1_X:144712299-144712695:+|nuORF	ENST00000443260.1_1_X:144712299-144712695:+|nuORF	ENST00000443260.1_1_X:144712299-144712695:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7093200683594	2	437.710014	873.405474	0.19713	8.6284E-05	-1.6129	-0.00070598	-1.4158	-0.0006197	437.7091532474162	78.781	0.60146	78.811	78.651	79.253	0.030159					37	20	3	0	0	0	0.53817	1	18970	18970		2.5775	0.27475	1	323390			25982	6529	17271	17436	34918	34918					-0.03629204445792311
YSKGIVQII	9	Unmodified	_YSKGIVQII_					0	0	0			REV__ENST00000463634.6_1_6:4056876-4060847:+|nuORF	REV__ENST00000463634.6_1_6:4056876-4060847:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2633056640625	2	510.808042	1019.60153	0.48405	0.00024726	-0.81915	-0.00041843	-0.3351	-0.00017117	510.807895269259	63.604	0.70918	63.604	63.317	64.026	0					43	24	4	0	0	0	0.23478	1	14445	14445		17.113	0	1	267960	+		25983	11974	17272	17437	34919	34919					0.09251503999769284
YSKSLLKHN	9	Unmodified	_YSKSLLKHN_					0	0	0			REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF	REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3057861328125	2	545.306198	1088.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.605	1	95.643	95.143	96.143	0.038872								0	0	0	0.27613	1	24052	24052		3.9444	0	1		+		25984	9659	17273	17438	34920	34920					0.057088342259021374
YSLEKKAKE	9	Unmodified	_YSLEKKAKE_					0	0	0			REV__tr|U7SUV6|U7SUV6_FUSNUCobalaminbiosynthesisproteinCobDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobDPE=3SV=1	REV__tr|U7SUV6|U7SUV6_FUSNUCobalaminbiosynthesisproteinCobDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobDPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.2899169921875	2	548.305864	1094.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.219	1	64.29	63.79	64.79	0.071014								0	0	0	0.2428	1	14503	14503		10.824	0.75	1		+		25985	13204	17274	17439	34921	34921					0.05365994786188821
YSLELFHSR	9	Unmodified	_YSLELFHSR_					0	0	0		ENST00000521687.5_1_7:27162261-27168026:+|nuORF	ENST00000521687.5_1_7:27162261-27168026:+|nuORF	ENST00000521687.5_1_7:27162261-27168026:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	576.29296875	2	576.29583	1150.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.663	1	75.663	75.163	76.163	0								0	0	0	0.24643	1	18136	18136		10.074	1.9184	1				25986	6961	17275	17440	34922	34922					0.007842438462375867
YSLERNTAK	9	Unmodified	_YSLERNTAK_					0	0	0			REV__ENSG00000036828|ENST00000639785|CASR	REV__ENSG00000036828|ENST00000639785|CASR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	541.28564453125	2	541.285463	1080.55637	0.37033	0.00020045	-0.14397	-7.7929E-05	0.22636	0.00012252	541.2853445984626	36.929	1.3874	37.01	36.79	38.177	0.081715					136	51	5	0	0	0	0.30397	1	6446	6446		6.2058	0	1	1487600	+		25987	8017	17276	17441	34923	34923					0.01931653466544958
YSLESCFWVI	10	Unmodified	_YSLESCFWVI_					0	0	0		ENST00000581440.5_1_17:25630497-25631818:+|nuORF	ENST00000581440.5_1_17:25630497-25631818:+|nuORF	ENST00000581440.5_1_17:25630497-25631818:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.1982421875	3	416.198609	1245.574	-0.56875	-0.00023671	-1.0238	-0.00042609	-1.5925	-0.0006628	416.198153217651	41.515	0.47029	41.605	41.398	41.869	0.089764					30	19	2	0	0	0	0.45627	1	7627	7627		1.7423	0	1	79621			25988	7224	17277	17442	34924	34924					-0.03896767322794403
YSLEVKYHC	9	Unmodified	_YSLEVKYHC_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2893676757812	2	571.270967	1140.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.114	1	53.114	52.614	53.614	0								0	0	0	0.25992	1	11260	11260		7.2892	0	1		+		25989	10307	17278	17443	34925	34925					-0.03726207154090844
YSLEYIQF	8	Unmodified	_YSLEYIQF_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	531.7599487304688	2	531.760758	1061.50696	0.049955	2.6564E-05	-0.80417	-0.00042763	-0.75422	-0.00040106	531.7602830757179	31.883	1.0404	31.957	31.634	32.674	0.07378					91	51	2	0	0	0	0.54097	1	4697	4697		0.69038	0	1	53851			25990	4775	17279	17444	34926	34926					-0.021330545422415526
YSLFAALLT	9	Unmodified	_YSLFAALLT_					0	0	0			REV__ENST00000466526.1_1_1:160147295-160152563:+|nuORF	REV__ENST00000466526.1_1_1:160147295-160152563:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.77984619140625	2	499.781493	997.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.893	1	89.893	89.393	90.393	0								0	0	0	0.27613	1	22469	22469		3.9444	0	1		+		25991	9126	17280	17445	34927	34927					0.04956126217086876
YSLFFLQNN	9	Unmodified	_YSLFFLQNN_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2721557617188	2	573.284931	1144.55531	0.090931	5.2129E-05	2.782	0.0015949	2.8729	0.001647	573.2864173803958	49.074	0.33121	49.151	49.007	49.338	0.076603					18	11	2	0	0	0	0.32112	1	9942	9942		3.9444	0.3479	1	49842	+		25992	8446	17281	17446	34928	34928					-0.011185609023186771
YSLFHPLLF	9	Unmodified	_YSLFHPLLF_					0	0	0		ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.8115844726562	2	568.810585	1135.60662	0.51188	0.00029116	-0.098381	-5.596E-05	0.4135	0.0002352	568.810416367424	92.816	1.0589	92.854	92.643	93.702	0.037369					82	43	3	0	0	0	0.32112	1	23385	23385		3.9444	0	1	534700			25993	6594	17282	17447	34929	34929					0.04423807862372087
YSLHDYAQM	9	Unmodified	_YSLHDYAQM_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2442626953125	2	564.244949	1126.47534	0.47005	0.00026523	-1.0616	-0.00059898	-0.59151	-0.00033376	564.2442156358084	87.843	0.48151	87.843	87.603	88.085	0					35	16	3	0	0	0	0.24021	1	21862	21862		13.906	1.6654	1	576400	+		25994	9285	17283	17448	34930	34930					-0.0828337056784676
YSLHDYAQM	9	Unmodified	_YSLHDYAQM_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	564.244949	1126.47534	0.28068	0.00015837	-1.0059	-0.00056758	-0.72524	-0.00040921	564.2444000711849	87.827	0.56814	87.857	87.628	88.196	0.030037	0.0071721	3.0417E-05	NaN	13.906	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242110	+		25995	9285	17283	17448							-0.0828337056784676
YSLIDLFTF	9	Unmodified	_YSLIDLFTF_					0	0	0			REV__ENST00000560400.1_1_17:40007277-40007520:-|nuORF	REV__ENST00000560400.1_1_17:40007277-40007520:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.318115234375	2	559.792058	1117.56956	0.53827	0.00030132	-0.6733	-0.00037691	-0.13503	-7.5589E-05	560.2928680409553	99.756	0.08416	99.756	99.688	99.772	0					5	3	2	0	0	0	0.25174	1	25466	25466		7.2892	0	1	244710	+		25996	12479	17284	17449	34931	34931					0.015480915259331596
YSLKQTSSPAL	11	Unmodified	_YSLKQTSSPAL_					0	0	0		ENST00000221233.8_1_19:41892448-41892541:-|nuORF	ENST00000221233.8_1_19:41892448-41892541:-|nuORF	ENST00000221233.8_1_19:41892448-41892541:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.822265625	2	597.821878	1193.6292	-0.058886	-3.5203E-05	1.7766	0.0010621	1.7177	0.0010269	597.822759252018	72.575	0.97395	72.575	72.228	73.202	0					69	33	3	0	0	0	0.3051	1	17215	17215		17.443	0.50035	1	450990			25997	5798	17285	17450	34932	34932					0.040133624693453385
YSLLMPLEL	9	Unmodified	_YSLLMPLEL_					0	0	0			REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF	REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	540.2964477539062	2	539.796286	1077.57802	0.25806	0.0001393	2.0006	0.0010799	2.2586	0.0012192	539.7983314613087	48.444	1.2929	48.444	48.159	49.452	0					116	44	4	0	0	0	0.092418	2	9890	9890;9976		34.102	1.9411	1	1460300	+		25998	11926	17286	17451	34933;34934	34933					0.04233322170921383
YSLLMPLEL	9	Unmodified	_YSLLMPLEL_					0	0	0			REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF	REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2962646484375	2	539.796286	1077.57802	0.44996	0.00024289	1.8426	0.00099464	2.2926	0.0012375	539.7982388660286	48.336	1.0032	48.416	48.155	49.159	0.080029					98	34	4	0	0	0	0.12809	2	9723	9723;9771		26.884	4.6064	1	1097800	+		25999	11926	17286	17451	34935;34936	34935					0.04233322170921383
YSLLVKDKK	9	Unmodified	_YSLLVKDKK_					0	0	0			REV__nc|ENSG00000137033|O95760-3|IL33	REV__nc|ENSG00000137033|O95760-3|IL33	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.3328857421875	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.325	1	94.325	93.825	94.825	0								0	0	0	0.2927	1	23819	23819		0.52476	0	1		+		26000	9264	17287	17452	34937	34937					0.11167462062553568
YSLLVKDKK	9	Unmodified	_YSLLVKDKK_					0	0	0			REV__nc|ENSG00000137033|O95760-3|IL33	REV__nc|ENSG00000137033|O95760-3|IL33	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.33203125	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.162	1	61.235	60.735	61.735	0.073421								0	0	0	0.27427	1	13573	13573		4.3292	0	1		+		26001	9264	17287	17452	34938	34938					0.11167462062553568
YSLNQETFF	9	Unmodified	_YSLNQETFF_					0	0	0			REV__ENSG00000137364|ENST00000309983|TPMT	REV__ENSG00000137364|ENST00000309983|TPMT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.768798828125	2	574.766571	1147.51859	0.48368	0.00027801	3.2517	0.001869	3.7354	0.002147	574.7694054277864	100.24	0.082794	100.28	100.22	100.3	0.042839					6	4	2	0	0	0	0.259	1	25467	25467		1.6526	0	1	25205	+		26002	9274	17288	17453	34939	34939					-0.049268575188989416
YSLVDQELQ	9	Unmodified	_YSLVDQELQ_					0	0	0			REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF	REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.760009765625	2	547.771854	1093.52915	0.60744	0.00033274	-2.1819	-0.0011952	-1.5745	-0.00086245	547.7704830207846	64.883	0.75446	64.883	64.382	65.137	0					45	27	2	0	0	0	0.16392	1	14744	14744		22.736	1.1993	1	104530	+		26003	9254	17289	17454	34940	34940					-0.013868748644881634
YSLVDQELQ	9	Unmodified	_YSLVDQELQ_					0	0	0			REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF	REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	547.771854	1093.52915	0.60744	0.00033274	-2.1819	-0.0011952	-1.5745	-0.00086245	547.7704830207846	64.883	0.75446	64.883	64.382	65.137	0	-0.11266	-0.00047806	NaN	22.736	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104530	+		26004	9254	17289	17454							-0.013868748644881634
YSLVLSGALAY	11	Unmodified	_YSLVLSGALAY_					0	0	0		ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7139282226562	2	578.816064	1155.61758	0.37697	0.00021819	0.74728	0.00043254	1.1242	0.00065073	578.8165315544834	77.115	0.33665	77.115	76.895	77.231	0					19	11	2	0	0	0	0.31023	1	18526	18526		8.1555	1.4324	1	438620			26005	412	17290	17455	34941	34941					0.045991654460067366
YSLVTQQPLG	10	Unmodified	_YSLVTQQPLG_					0	0	0		tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.2989501953125	2	553.298039	1104.58152	0.55794	0.00030871	0.69922	0.00038687	1.2572	0.00069558	553.2983446478402	100.13	0.79102	100.13	99.887	100.68	0					86	42	3	0	0	0	0.37637	2	25575	25575;25624		14.405	3.2909	1	448520			26006	13708	17291	17456	34942;34943	34942					0.03341708269135779
YSLVTQQPLG	10	Unmodified	_YSLVTQQPLG_					0	0	0		tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.2991943359375	2	553.298039	1104.58152	0.68797	0.00038065	0.63687	0.00035238	1.3248	0.00073303	553.2982125031772	100.04	0.83275	100.09	99.894	100.73	0.042839					97	47	4	0	0	0	0.33001	2	25399	25399;25443		19.362	1.5328	1	305240			26007	13708	17291	17456	34944;34945	34944					0.03341708269135779
YSLWFKQIM	9	Unmodified	_YSLWFKQIM_					0	0	0		ENSG00000126231|ENST00000375547|PROZ;nc|ENSG00000126231|P22891-2|PROZ	ENSG00000126231|ENST00000375547|PROZ	ENSG00000126231|ENST00000375547|PROZ	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	405.1924133300781	3	405.87921	1214.6158	0.38371	0.00015574	-0.42607	-0.00017293	-0.042356	-1.7191E-05	406.2140624290297	52.257	0.98415	52.257	51.961	52.945	0					86	34	5	0	0	0	0.25579	1	10971	10971		2.4985	0.75621	1	106620			26008	2332	17292	17457	34946	34946					0.017078331563880056
YSLWNYQGL	9	Unmodified	_YSLWNYQGL_					0	0	0			REV__ACSL3|p.N510Kfs*9|1|0.33|ENSG00000123983|chr2:222928919-222928920|-/A|frameshift_variant	REV__ACSL3|p.N510Kfs*9|1|0.33|ENSG00000123983|chr2:222928919-222928920|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2767333984375	2	572.277106	1142.53966	-0.20802	-0.00011904	-0.17331	-9.9179E-05	-0.38133	-0.00021822	572.2770440382503	26.171	0.40399	26.171	26.026	26.43	0					49	34	2	0	0	0	0.34704	1	3184	3184		0.52476	0	1	24344	+		26009	7691	17293	17458	34947	34947					-0.02590847419378406
YSLWNYQGL	9	Unmodified	_YSLWNYQGL_					0	0	0			REV__ACSL3|p.N510Kfs*9|1|0.33|ENSG00000123983|chr2:222928919-222928920|-/A|frameshift_variant	REV__ACSL3|p.N510Kfs*9|1|0.33|ENSG00000123983|chr2:222928919-222928920|-/A|frameshift_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	572.277106	1142.53966	-0.091894	-5.2589E-05	-0.10928	-6.2538E-05	-0.20117	-0.00011513	572.2770818525746	26.088	0.34871	26.18	25.971	26.32	0.091507	0.0044326	4.2677E-05	NaN	0.52476	45	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17586	+		26010	7691	17293	17458							-0.02590847419378406
YSLWWFSF	8	Unmodified	_YSLWWFSF_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.8103637695312	2	568.26601	1134.51747	0.24544	0.00013947	-2.4224	-0.0013766	-2.1769	-0.0012371	568.2645500541404	77.569	0.73959	77.569	77.413	78.153	0					57	26	3	0	0	0	0.3528	1	18855	18855		18.135	3.5533	1	271280	+		26011	8894	17294	17459	34948	34948					-0.04441027097141159
YSLWWFSF	8	Unmodified	_YSLWWFSF_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.26601	1134.51747	0.39465	0.00022427	-4.2105	-0.0023927	-3.8159	-0.0021684	568.2633841836342	77.516	0.35722	77.55	77.465	77.822	0.034485	-0.009583	-0.00029456	NaN	18.135	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239170	+		26012	8894	17294	17459							-0.04441027097141159
YSLYMLSI	8	Unmodified	_YSLYMLSI_					0	0	0			REV__ENST00000377191.4_1_20:21370232-21370421:+|nuORF	REV__ENST00000377191.4_1_20:21370232-21370421:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.255615234375	2	495.254254	988.493955	-0.40663	-0.00020139	3.2087	0.0015891	2.802	0.0013877	495.2561993369213	42.028	0.42353	42.028	41.856	42.279	0					29	14	3	0	0	0	0.42348	1	7890	7890		23.148	2.7339	1	89643	+		26013	11648	17295	17460	34949	34949					-0.0007520892596630802
YSLYMLSI	8	Unmodified	_YSLYMLSI_					0	0	0			REV__ENST00000377191.4_1_20:21370232-21370421:+|nuORF	REV__ENST00000377191.4_1_20:21370232-21370421:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	495.254254	988.493955	-0.40663	-0.00020139	3.2087	0.0015891	2.802	0.0013877	495.2561993369213	42.028	0.42353	42.028	41.856	42.279	0	-0.019493	-0.00091552	NaN	23.148	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89643	+		26014	11648	17295	17460							-0.0007520892596630802
YSLYMLSI	8	Unmodified	_YSLYMLSI_					0	0	0			REV__ENST00000377191.4_1_20:21370232-21370421:+|nuORF	REV__ENST00000377191.4_1_20:21370232-21370421:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	495.254254	988.493955	-0.22463	-0.00011125	4.408	0.0021831	4.1833	0.0020718	495.256372458165	41.977	0.39774	42.067	41.893	42.291	0.089764	0.019493	0.00027239	NaN	23.148	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81493	+		26015	11648	17295	17460							-0.0007520892596630802
YSLYQKALN	9	Unmodified	_YSLYQKALN_					0	0	0			REV__nc|ENSG00000150687|O95084-2|PRSS23	REV__nc|ENSG00000150687|O95084-2|PRSS23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2939453125	2	550.292756	1098.57096	0.6169	0.00033947	1.7324	0.00095333	2.3493	0.0012928	550.2936215194818	92.305	0.56641	92.305	92.088	92.654	0					51	21	4	0	0	0	0.26684	1	23275	23275		10.824	0	1	472820	+		26016	12811	17296	17461	34950	34950					0.025617256147143053
YSMNPSIRLL	10	Unmodified	_YSMNPSIRLL_					0	0	0		ENSG00000002587|ENST00000002596|HS3ST1	ENSG00000002587|ENST00000002596|HS3ST1	ENSG00000002587|ENST00000002596|HS3ST1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.8235473632812	2	597.320991	1192.62743	-0.0035184	-2.1016E-06	-0.69399	-0.00041454	-0.69751	-0.00041664	597.3196205308197	72.45	0.91711	72.506	72.239	73.156	0.055939					92	31	4	0	0	0	0.44727	1	17113	17113		5.2969	0.39987	1	787230			26017	324	17297	17462	34951	34951					0.03882030179738649
YSNDNTPLASG	11	Unmodified	_YSNDNTPLASG_					0	0	0			REV__ENSG00000204539|ENST00000376288|CDSN	REV__ENSG00000204539|ENST00000376288|CDSN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.7540893554688	2	569.754192	1137.49383	-0.031619	-1.8015E-05	-0.058236	-3.318E-05	-0.089856	-5.1196E-05	569.7541930429601	23.7	0.30784	23.8	23.667	23.975	0.099739					49	28	2	0	0	0	0.41892	1	2377	2377		0	0	1	32489	+		26018	10948	17298	17463	34952	34952					-0.06941537392299324
YSNNPKPSTAY	11	Unmodified	_YSNNPKPSTAY_					0	0	0			REV__ENSG00000138439|ENST00000392238|FAM117B	REV__ENSG00000138439|ENST00000392238|FAM117B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.275146484375	2	621.293485	1240.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.455	1	65.522	65.022	66.022	0.066872								0	0	0	0.30951	1	14878	14878		11.495	2.1116	1		+		26019	9314	17299	17464	34953	34953					-0.0382468508717011
YSNSKGSFAF	10	Unmodified	_YSNSKGSFAF_					0	0	0		ENST00000462589.1_1_1:192545713-192545773:+|nuORF	ENST00000462589.1_1_1:192545713-192545773:+|nuORF	ENST00000462589.1_1_1:192545713-192545773:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.795654296875	2	554.258914	1106.50327	0.83594	0.00046333	-1.1102	-0.00061531	-0.27421	-0.00015198	554.258162324655	65.695	0.93616	65.695	65.472	66.408	0					72	33	3	0	0	0	0.31443	1	15233	15233		16.149	2.2431	1	404440			26020	6619	17300	17465	34954	34954					-0.04571724316087966
YSNSKGSFAF	10	Unmodified	_YSNSKGSFAF_					0	0	0		ENST00000462589.1_1_1:192545713-192545773:+|nuORF	ENST00000462589.1_1_1:192545713-192545773:+|nuORF	ENST00000462589.1_1_1:192545713-192545773:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7960205078125	2	554.258914	1106.50327	0.7444	0.00041259	-0.87231	-0.00048348	-0.1279	-7.0892E-05	554.2583026255794	65.668	1.0817	65.734	65.522	66.604	0.066872					87	41	3	0	0	0	0.29771	1	15118	15118		22.736	7.898	1	476640			26021	6619	17300	17465	34955	34955					-0.04571724316087966
YSNWPTIPQ	9	Unmodified	_YSNWPTIPQ_					0	0	0		ENST00000553672.1_1_14:96000082-96010459:+|nuORF;ENST00000427955.1_1_X:119866992-119867247:+|nuORF;ENSG00000182512|ENST00000331334|GLRX5	ENST00000553672.1_1_14:96000082-96010459:+|nuORF	ENST00000553672.1_1_14:96000082-96010459:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.7960205078125	2	553.269281	1104.52401	0.6958	0.00038497	-0.70673	-0.00039101	-0.010927	-6.0454E-06	553.2688271188026	65.557	1.0829	65.624	65.344	66.427	0.066872					94	41	4	0	0	0	0.23975	1	15118	15118		14.838	0	1	1649200			26022	4879	17301	17466	34956	34956					-0.02407133936435457
YSNWSNTFP	9	Unmodified	_YSNWSNTFP_					0	0	0			REV__ENST00000399510.6_3_17:7122554-7122863:-|nuORF	REV__ENST00000399510.6_3_17:7122554-7122863:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.292236328125	2	558.243264	1114.47197	0.38496	0.0002149	-2.4007	-0.0013402	-2.0157	-0.0011253	558.2418831331639	74.095	0.6924	74.095	73.887	74.579	0					35	25	2	0	0	0	0.2446	1	17687	17687		11.64	1.4569	1	317630	+		26023	11746	17302	17467	34957	34957					-0.08068297350200737
YSNWSNTFP	9	Unmodified	_YSNWSNTFP_					0	0	0			REV__ENST00000399510.6_3_17:7122554-7122863:-|nuORF	REV__ENST00000399510.6_3_17:7122554-7122863:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.2921142578125	2	558.243264	1114.47197	0.62583	0.00034936	-2.1224	-0.0011848	-1.4966	-0.00083547	558.2424670212663	74.138	0.62949	74.187	74.016	74.645	0.048546					31	22	2	0	0	0	0.2446	1	17524	17524		11.64	3.047	1	165560	+		26024	11746	17302	17467	34958	34958					-0.08068297350200737
YSPDLASGAPP	11	Unmodified	_YSPDLASGAPP_					0	0	0			REV__nc|ENSG00000206538|A8MV65-2|VGLL3	REV__nc|ENSG00000206538|A8MV65-2|VGLL3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.7598876953125	2	537.758746	1073.50294	0.3703	0.00019913	1.2367	0.00066504	1.607	0.00086417	537.7593861211697	86.836	0.61026	86.863	86.672	87.283	0.027573					48	27	2	0	0	0	0.26943	1	21378	21378		21.537	5.6898	1	567200	+		26025	10985	17303	17468	34959	34959					-0.030871440359533153
YSPKKEKSVF	10	Unmodified	_YSPKKEKSVF_					0	0	0			REV__nc|ENSG00000163599|P16410-4|CTLA4	REV__nc|ENSG00000163599|P16410-4|CTLA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.834716796875	2	606.834788	1211.65502	0.77061	0.00046764	-0.69115	-0.00041941	0.079466	4.8223E-05	606.8342804185568	84.141	0.3802	84.163	83.915	84.295	0.021744					34	13	3	0	0	0	0.40359	1	20572	20572		11.495	0	1	605970	+		26026	12830	17304	17469	34960	34960					0.05766256711604001
YSPLSQKLF	9	Unmodified	_YSPLSQKLF_					0	0	0			REV__nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	REV__nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.27734375	2	541.797675	1081.5808	0.034344	1.8607E-05	0.17583	9.5263E-05	0.21017	0.00011387	541.7975915470796	72.783	0.67876	72.783	72.436	73.115	0					51	23	3	0	0	0	0.2446	1	17151	17151		11.64	0	1	199340	+		26027	10794	17305	17470	34961	34961					0.04326913620070627
YSPPPPGLPKK	11	Unmodified	_YSPPPPGLPKK_					0	0	0			REV__nc|ENSG00000122257|Q7Z6E9-4|RBBP6	REV__nc|ENSG00000122257|Q7Z6E9-4|RBBP6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.8687133789062	2	590.839874	1179.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.124	1	12.124	11.624	12.624	0								0	0	0	0.34212	1	20	20		0	0	1		+		26028	8912	17306	17471	34962	34962					0.08254864436821663
YSPQRGQQL	9	Unmodified	_YSPQRGQQL_					0	0	0		ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2	ENST00000548184.1_1_12:57644959-57689258:-|nuORF	ENST00000548184.1_1_12:57644959-57689258:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7775268554688	2	538.777805	1075.54106	-0.024576	-1.3241E-05	0.16085	8.6661E-05	0.13627	7.342E-05	538.7779112090078	39.849	0.54755	39.849	39.633	40.18	0					34	18	2	0	0	0	0.083124	1	7221	7221		36.127	0	1	165970			26029	4793	17307	17472	34963	34963					0.006307866693987307
YSPSYYWI	8	Unmodified	_YSPSYYWI_					0	0	0		SELE|p.Q346Rfs*33|1|0.19|ENSG00000007908|chr1:169729240-169729240|G/-|frameshift_variant;ENSG00000007908|ENST00000333360|SELE	SELE|p.Q346Rfs*33|1|0.19|ENSG00000007908|chr1:169729240-169729240|G/-|frameshift_variant	SELE|p.Q346Rfs*33|1|0.19|ENSG00000007908|chr1:169729240-169729240|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2484130859375	2	539.74765	1077.48075	0.41853	0.0002259	-2.2782	-0.0012297	-1.8597	-0.0010038	540.2478318594152	61.374	0.44883	61.448	61.081	61.53	0.073421					36	19	3	0	0	0	0.49441	2	13592	13592;13627		13.508	2.684	1	241010			26030	388	17308	17473	34964;34965	34964					-0.05489323713709382
YSQCLELPWGL	11	Unmodified	_YSQCLELPWGL_					0	0	0			REV__ENST00000564973.1_1_16:2569080-2569164:+|nuORF	REV__ENST00000564973.1_1_16:2569080-2569164:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.239501953125	3	436.88128	1307.62201	0.31555	0.00013786	-3.3707	-0.0014726	-3.0552	-0.0013347	436.8791481677147	77.83	0.61963	77.864	77.465	78.085	0.034485					27	20	2	0	0	0	0.31087	1	18588	18588		2.8433	0.93691	1	61426	+		26031	12496	17309	17474	34966	34966					-0.01949693402775665
YSQDDNFIVF	10	Unmodified	_YSQDDNFIVF_					0	0	0			REV__ENSG00000163659|ENST00000295924|TIPARP	REV__ENSG00000163659|ENST00000295924|TIPARP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.2277526855469	3	416.524149	1246.55062	0.61821	0.0002575	0.1374	5.723E-05	0.75561	0.00031473	416.5242213875857	75.282	0.2789	75.282	75.199	75.478	0					15	10	2	0	0	0	0.3184	1	18073	18073		1.7423	0	1	123800	+		26032	9951	17310	17475	34967	34967					-0.06279489835787899
YSQDDNFIVF	10	Unmodified	_YSQDDNFIVF_					0	0	0			REV__ENSG00000163659|ENST00000295924|TIPARP	REV__ENSG00000163659|ENST00000295924|TIPARP	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	416.524149	1246.55062	0.19704	8.2073E-05	0.25945	0.00010807	0.4565	0.00019014	416.52413897415977	75.255	0.28011	75.299	75.19	75.47	0.044044	0.0087892	0.00011963	NaN	1.7423	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134880	+		26033	9951	17310	17475							-0.06279489835787899
YSQDVLAHPV	10	Unmodified	_YSQDVLAHPV_					0	0	0		nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	nc|ENSG00000095066|Q96ED9-2|HOOK2	nc|ENSG00000095066|Q96ED9-2|HOOK2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.7694091796875	2	564.787838	1127.56112	0.25859	0.00014605	-0.29073	-0.0001642	-0.032146	-1.8156E-05	564.7876385125575	51.598	0.27453	51.668	51.585	51.86	0.069874					15	9	2	0	0	0	0.36288	1	10722	10722		15.847	3.6065	1	72352			26034	1093	17311	17476	34968	34968					0.0024453760929645796
YSQRPWKQ	8	Unmodified	_YSQRPWKQ_					0	0	0		ENST00000552189.5_1_12:48438897-48439101:-|nuORF	ENST00000552189.5_1_12:48438897-48439101:-|nuORF	ENST00000552189.5_1_12:48438897-48439101:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.772216796875	2	546.78289	1091.55123	0.32195	0.00017604	1.8574	0.0010156	2.1793	0.0011916	546.7836094762526	102.09	0.30147	102.09	101.98	102.28	0					26	19	2	0	0	0	0.54097	1	26151	26151		0.69038	0	1	35149			26035	7104	17312	17477	34969	34969					0.009113943946204017
YSQVRRQR	8	Unmodified	_YSQVRRQR_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	547.2842407226562	2	546.804688	1091.59482	0.47778	0.00026125	-2.6343	-0.0014405	-2.1566	-0.0011792	546.8037789277479	64.813	0.11646	64.882	64.815	64.931	0.068916					5	3	2	0	0	0	0.3576	1	14690	14690		5.2307	0.47466	1	20925	+		26036	8074	17313	17478	34970	34970					0.0526900389174898
YSQYNRIL	8	Unmodified	_YSQYNRIL_					0	0	0			REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.77490234375	2	528.777274	1055.53999	0.0070447	3.7251E-06	-3.0011	-0.0015869	-2.9941	-0.0015832	528.7753448056035	23.433	0.13952	23.533	23.459	23.599	0.099739					18	14	2	0	0	0	0.54097	1	2290	2290		0.69038	0	1	9474.2	+		26037	13313	17314	17479	34971	34971					0.01444572300465552
YSRPMSPLY	9	Unmodified	_YSRPMSPLY_					0	0	0			REV__nc|ENSG00000137337|Q14676-4|MDC1	REV__nc|ENSG00000137337|Q14676-4|MDC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.802978515625	2	557.273509	1112.53247	0.47995	0.00026746	0.84848	0.00047283	1.3284	0.0007403	557.2733343160126	74.462	0.21761	74.462	74.31	74.527	0					10	7	2	0	0	0	0.24791	1	17778	17778		10.074	1.4806	1	50287	+		26038	9273	17315	17480	34972	34972					-0.019299032914432246
YSRSQKRF	8	Unmodified	_YSRSQKRF_					0	0	0			REV__ENST00000463995.5_1_3:49713127-49713790:+|nuORF	REV__ENST00000463995.5_1_3:49713127-49713790:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	535.7871704101562	2	536.28834	1070.56213	0.22801	0.00012228	-0.41593	-0.00022306	-0.18793	-0.00010078	536.2880676331276	73.396	1.6558	73.396	73.228	74.884	0					75	60	2	0	0	0	0.3576	1	17533	17533		8.5933	8.5933	1	333330	+		26039	11980	17316	17481	34973	34973					0.02966796768896529
YSRTAKWFCF	10	Unmodified	_YSRTAKWFCF_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-3|RGSL1	REV__nc|ENSG00000121446|A5PLK6-3|RGSL1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	436.8795471191406	3	436.877981	1307.61211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.84	1	86.84	86.34	87.34	0								0	0	0	0.33855	1	21546	21546		1.9064	0.57673	1		+		26040	8900	17317	17482	34974	34974					-0.029388366174771363
YSRTGSSVL	9	Unmodified	_YSRTGSSVL_					0	0	0			REV__chr6:7310029-7329849|305|10.78|0.03|8.29|-|1|SSR1,CAGE1|3	REV__chr6:7310029-7329849|305|10.78|0.03|8.29|-|1|SSR1,CAGE1|3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	485.252685546875	2	485.253631	968.49271	-0.82819	-0.00040188	-0.19491	-9.4578E-05	-1.0231	-0.00049646	485.25344417042817	41.95	0.92001	41.95	41.679	42.599	0					65	31	3	0	0	0	0.19398	1	7853	7853		19.257	4.4187	1	498610	+		26041	7809	17318	17483	34975	34975					0.007202930294965881
YSRTGSSVL	9	Unmodified	_YSRTGSSVL_					0	0	0			REV__chr6:7310029-7329849|305|10.78|0.03|8.29|-|1|SSR1,CAGE1|3	REV__chr6:7310029-7329849|305|10.78|0.03|8.29|-|1|SSR1,CAGE1|3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	485.253662109375	2	485.253631	968.49271	-0.609	-0.00029552	0.19576	9.4993E-05	-0.41324	-0.00020052	485.2536809841858	41.875	0.78466	41.965	41.736	42.52	0.089767					64	29	3	0	0	0	0.30397	1	7791	7791		6.2058	0	1	410330	+		26042	7809	17318	17483	34976	34976					0.007202930294965881
YSSERSVL	8	Unmodified	_YSSERSVL_					0	0	0		ENST00000569617.1_1_15:74703630-74703961:-|nuORF;nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A	ENST00000569617.1_1_15:74703630-74703961:-|nuORF	ENST00000569617.1_1_15:74703630-74703961:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	470.7403259277344	2	470.740357	939.46616	-0.12669	-5.964E-05	0.25345	0.00011931	0.12675	5.9667E-05	470.7403672462601	39.405	1.207	39.405	39.134	40.341	0					105	43	4	0	0	0	0.53026	2	7208	7208;7252		7.9102	0	1	831310			26043	2920	17319	17484	34977;34978	34977					-0.005993958618546458
YSSFGITHS	9	Unmodified	_YSSFGITHS_					0	0	0			REV__ENST00000237654.8_1_4:77976507-77977157:-|nuORF	REV__ENST00000237654.8_1_4:77976507-77977157:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.1746520996094	2	499.732532	997.45051	-0.19077	-9.5334E-05	0.090119	4.5035E-05	-0.10065	-5.0298E-05	499.7324966541734	42.483	0.38417	42.573	42.37	42.754	0.089764					21	13	2	0	0	0	0.2446	1	7906	7906		11.64	0	1	59508	+		26044	11196	17320	17485	34979	34979					-0.0483168237889231
YSSFRSVR	8	Unmodified	_YSSFRSVR_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.7298278808594	2	501.261791	1000.50903	-0.088204	-4.4213E-05	0.02431	1.2186E-05	-0.063895	-3.2028E-05	501.2616463775013	26.605	0.29428	26.691	26.515	26.809	0.0867					35	22	2	0	0	0	0.3576	1	3160	3160		1.8442	0.19162	1	18490			26045	3147	17321	17486	34980	34980					0.008794189862442181
YSSHSSTLLC	10	Unmodified	_YSSHSSTLLC_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7654418945312	2	549.250231	1096.48591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.463	1	85.463	84.963	85.963	0								0	0	0	0.20707	1	21124	21124		29.082	3.6823	1				26046	3730	17322	17487	34981	34981					-0.058473879133771334
YSSILFLTCFS	11	Unmodified	_YSSILFLTCFS_					0	0	0		ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.7973022460938	2	640.815207	1279.61586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.018	1	55.018	54.518	55.518	0								0	0	0	0.31731	1	11843	11843		8.7454	0	1				26047	4093	17323	17488	34982	34982					-0.01276211634262836
YSSRAIEQHY	10	Unmodified	_YSSRAIEQHY_					0	0	0			REV__ENST00000566430.2_1_16:68349882-68355449:+|nuORF	REV__ENST00000566430.2_1_16:68349882-68355449:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2987060546875	2	627.299101	1252.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.725	1	15.725	15.225	16.225	0								0	0	0	0.34018	1	599	599		0	0	1		+		26048	9122	17324	17489	34983	34983					-0.032538629930286334
YSSSARWHF	9	Unmodified	_YSSSARWHF_					0	0	0			REV__ENST00000355527.7_1_11:71155154-71155907:-|nuORF	REV__ENST00000355527.7_1_11:71155154-71155907:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7801513671875	2	570.764697	1139.51484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.372	1	35.372	34.872	35.872	0								0	0	0	0.28527	1	5898	5898		2.0598	0.21551	1		+		26049	11497	17325	17490	34984	34984					-0.049334825021105644
YSSTQVSVR	9	Unmodified	_YSSTQVSVR_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2666015625	2	513.764363	1025.51417	-0.10601	-5.4462E-05	0.61146	0.00031415	0.50545	0.00025968	513.7646618200645	28.301	0.26654	28.301	28.095	28.362	0					22	13	3	0	0	0	0.24767	1	3796	3796		13.042	4.4492	1	32545			26050	5666	17326	17491	34985	34985					0.0024367805817746557
YSSTQVSVR	9	Unmodified	_YSSTQVSVR_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.7644653320312	2	513.764363	1025.51417	-0.094683	-4.8645E-05	0.65478	0.0003364	0.5601	0.00028776	513.764648941367	28.21	0.27284	28.292	28.069	28.341	0.082134					24	14	2	0	0	0	0.22083	1	3628	3628		16.149	6.0752	1	45666			26051	5666	17326	17491	34986	34986					0.0024367805817746557
YSTENQLR	8	Unmodified	_YSTENQLR_					0	0	0			REV__ENSG00000198876|ENST00000361264|DCAF12	REV__ENSG00000198876|ENST00000361264|DCAF12	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7484436035156	2	505.748713	1009.48287	-0.3186	-0.00016113	-0.071931	-3.6379E-05	-0.39053	-0.00019751	505.7487308697265	23.878	1.2008	23.878	23.624	24.825	0					285	102	5	0	0	0	0.53858	1	2666	2666		2.3027	2.3027	1	1201300	+		26052	10922	17327	17492	34987	34987					-0.02148894975903204
YSTKPRLSSW	10	Unmodified	_YSTKPRLSSW_					0	0	0		SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|63|3|anti-sense	SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|63|3|anti-sense	SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|63|3|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.8062744140625	2	612.822212	1223.62987	0.17008	0.00010423	0.083132	5.0945E-05	0.25321	0.00015518	612.8221450794209	62.059	0.31305	62.133	61.972	62.285	0.073421					38	11	4	0	0	0	0.34138	1	13875	13875		18.146	6.6516	1	879060			26053	13410	17328	17493	34988	34988					0.027002019090332396
YSTPFEYLE	9	Unmodified	_YSTPFEYLE_					0	0	0		nc|ENSG00000142794|Q9H094-4|NBPF3;nc|ENSG00000142794|Q9H094-5|NBPF3;nc|ENSG00000142794|Q9H094-2|NBPF3;nc|ENSG00000142794|Q9H094-3|NBPF3;ENSG00000142794|ENST00000318249|NBPF3	nc|ENSG00000142794|Q9H094-4|NBPF3	nc|ENSG00000142794|Q9H094-4|NBPF3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7608642578125	2	574.760955	1147.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.902	1	28.902	28.402	29.402	0								0	0	0	0.29525	1	3975	3975		0	0	1				26054	3122	17329	17494	34989	34989					-0.06049679613079206
YSTTPGRQ	8	Unmodified	_YSTTPGRQ_					0	0	0		ENSG00000135443|ENST00000257901|KRT85;CON__P78386	ENSG00000135443|ENST00000257901|KRT85	ENSG00000135443|ENST00000257901|KRT85	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.2364196777344	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.519	1	99.562	99.062	100.06	0.042839								0	0	0	0.38822	1	25243	25243		2.5775	0	1			+	26055	225	17330	17495	34990	34990					-0.022685491760853438
YSVARGNRA	9	Unmodified	_YSVARGNRA_					0	0	0			REV__ENST00000604292.1_1_6:101337837-101337969:+|nuORF	REV__ENST00000604292.1_1_6:101337837-101337969:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.19635009765625	2	497.264865	992.515176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.433	1	39.521	39.021	40.021	0.088562								0	0	0	0.27613	1	6996	6996		3.9444	0.3479	1		+		26056	12634	17331	17496	34991	34991					0.01861937217756804
YSVEFPDIW	9	Unmodified	_YSVEFPDIW_					0	0	0			REV__ENSG00000141232|ENST00000499247|TOB1	REV__ENSG00000141232|ENST00000499247|TOB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3209228515625	2	578.27149	1154.52843	0.39026	0.00022568	0.18052	0.00010439	0.57078	0.00033007	578.2718688433903	86.491	0.37933	86.518	86.293	86.672	0.027573					25	15	3	0	0	0	0.2446	1	21247	21247		7.2892	0	1	91036	+		26057	9388	17332	17497	34992	34992					-0.042656695135292466
YSVEVFYS	8	Unmodified	_YSVEVFYS_					0	0	0			REV__KIF1A|p.S141F|1|0.73|ENSG00000130294|chr2:240787258-240787258|G/A|missense_variant	REV__KIF1A|p.S141F|1|0.73|ENSG00000130294|chr2:240787258-240787258|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.2310485839844	2	497.231833	992.449113	0.70014	0.00034813	-1.6034	-0.00079725	-0.90324	-0.00044912	497.2310478648439	54.761	0.38132	54.826	54.65	55.032	0.065128					38	16	3	0	0	0	0.50815	1	11685	11685		11.64	0.84079	1	246760	+		26058	12689	17333	17498	34993	34993					-0.04741316467664092
YSVGIYRDISI	11	Unmodified	_YSVGIYRDISI_					0	0	0			REV__nc|ENSG00000120907|P35348-5|ADRA1A	REV__nc|ENSG00000120907|P35348-5|ADRA1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3423461914062	2	643.342978	1284.6714	0.43277	0.00027842	0.28207	0.00018146	0.71484	0.00045989	643.3434232554011	65.758	1.3534	65.825	65.316	66.67	0.066872					132	52	4	0	0	0	0.37887	1	15128	15128		8.9762	1.3673	1	1555800	+		26059	7698	17334	17499	34994	34994					0.040453378777101534
YSVHSMVLK	9	Unmodified	_YSVHSMVLK_					0	0	0		ENST00000415930.7_2_19:34891426-34891615:+|nuORF	ENST00000415930.7_2_19:34891426-34891615:+|nuORF	ENST00000415930.7_2_19:34891426-34891615:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.29833984375	2	532.283877	1062.5532	0.35668	0.00018985	-2.2884	-0.0012181	-1.9317	-0.0010282	532.2827147417081	38.013	0.4946	38.013	37.837	38.332	0					23	16	2	0	0	0	0.2546	1	6687	6687		12.241	1.4167	1	36320			26060	6420	17335	17500	34995	34995					0.024426870882052754
YSVHSMVLK	9	Unmodified	_YSVHSMVLK_					0	0	0		ENST00000415930.7_2_19:34891426-34891615:+|nuORF	ENST00000415930.7_2_19:34891426-34891615:+|nuORF	ENST00000415930.7_2_19:34891426-34891615:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.298095703125	2	532.283877	1062.5532	0.46708	0.00024862	-2.5798	-0.0013732	-2.1128	-0.0011246	532.2824304966853	37.896	0.42118	37.981	37.744	38.165	0.084476					31	14	3	0	0	0	0.2125	1	6526	6526		17.113	1.2657	1	41923			26061	6420	17335	17500	34996	34996					0.024426870882052754
YSVPFYPTF	9	Unmodified	_YSVPFYPTF_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2538452148438	2	560.771126	1119.5277	0.61078	0.00034251	-0.26926	-0.00015099	0.34152	0.00019152	560.7708054571272	85.338	0.17792	85.338	85.282	85.459	0					9	6	2	0	0	0	0.23598	1	21073	21073		15.847	0	1	44916			26062	2066	17336	17501	34997	34997					-0.02728464162578348
YSVRWHNF	8	Unmodified	_YSVRWHNF_					0	0	0			REV__ENSG00000162630|ENST00000367434|B3GALT2	REV__ENSG00000162630|ENST00000367434|B3GALT2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	555.2507934570312	2	554.769783	1107.52501	0.79617	0.00044169	-1.7027	-0.00094462	-0.90656	-0.00050293	554.7687911762549	83.96	0.49559	83.96	83.686	84.182	0					43	16	4	0	0	0	0.49441	1	20639	20639		13.508	0.46542	1	137180	+		26063	9895	17337	17502	34998	34998					-0.02444874776870165
YSVSLFFFFT	10	Unmodified	_YSVSLFFFFT_					0	0	0			REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF	REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8396606445312	2	629.313158	1256.61176	0.41364	0.00026031	4.0865	0.0025717	4.5001	0.002832	629.315570903971	98.201	0.10262	98.201	98.116	98.219	0					6	4	2	0	0	0	0.45794	1	24984	24984		3.2813	0.54611	1	35947	+		26064	11583	17338	17503	34999	34999					-0.006279330656752791
YSVTSMCLFA	10	Unmodified	_YSVTSMCLFA_					0	0	0			REV__ENST00000261681.8_1_14:67800483-67800651:+|nuORF	REV__ENST00000261681.8_1_14:67800483-67800651:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.2545776367188	2	561.253928	1120.4933	0.35015	0.00019653	0.74719	0.00041936	1.0973	0.00061589	561.2543189638191	77.367	0.42359	77.367	77.231	77.655	0					45	21	3	0	0	0	0.28643	1	18650	18650		24.021	8.1734	1	395700	+		26065	11234	17339	17504	35000	35000					-0.062123716373434945
YSWHDEIHWCF	11	Unmodified	_YSWHDEIHWCF_					0	0	0			REV__ENSG00000073614|ENST00000399788|KDM5A	REV__ENSG00000073614|ENST00000399788|KDM5A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	508.2120666503906	3	508.2118	1521.61357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.707	1	19.707	19.207	20.207	0								0	0	0	0.34185	1	1418	1418		0.094841	0	1		+		26066	8177	17340	17505	35001	35001					-0.12637247319389644
YSWQCVNQSVL	11	Unmodified	_YSWQCVNQSVL_					0	0	0		ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.90423583984375	3	442.876417	1325.60742	0.49476	0.00021912	0.10967	4.8572E-05	0.60443	0.00026769	442.876340620045	53.471	1.113	53.471	53.234	54.347	0					86	42	3	0	0	0	0.31091	1	11571	11571		2.4348	0	1	284920			26067	748	17341	17506	35002	35002					-0.04235765550902215
YSWSLYLVL	9	Unmodified	_YSWSLYLVL_					0	0	0			REV__ENSG00000103089|ENST00000219368|FA2H	REV__ENSG00000103089|ENST00000219368|FA2H	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.3084106445312	2	572.307875	1142.6012	0.35783	0.00020479	0.27678	0.0001584	0.63461	0.00036319	572.3076921143162	96.469	0.54362	96.469	96.134	96.678	0					50	24	3	0	0	0	0.21398	1	24454	24454		16.942	0	1	877410	+		26068	8468	17342	17507	35003	35003					0.035600842798885424
YSWSSLQQ	8	Unmodified	_YSWSSLQQ_					0	0	0		EZH2|p.P115S|1|0.06|ENSG00000106462|chr7:148832654-148832654|G/A|missense_variant	EZH2|p.P115S|1|0.06|ENSG00000106462|chr7:148832654-148832654|G/A|missense_variant	EZH2|p.P115S|1|0.06|ENSG00000106462|chr7:148832654-148832654|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.1747131347656	2	499.732532	997.45051	-0.33988	-0.00016985	0.25319	0.00012653	-0.086686	-4.332E-05	499.7325659308043	42.578	0.49526	42.578	42.333	42.829	0					23	16	2	0	0	0	0.3576	1	8031	8031		8.5933	0	1	44694			26069	7334	17343	17508	35004	35004					-0.0483168237889231
YSYISISSLNY	11	Unmodified	_YSYISISSLNY_					0	0	0			REV__nc|ENSG00000163754|P46976-3|GYG1	REV__nc|ENSG00000163754|P46976-3|GYG1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.7156677246094	3	437.215204	1308.62378	0.3827	0.00016732	-1.2252	-0.00053566	-0.84248	-0.00036834	437.21450724670603	99.46	0.90743	99.503	98.759	99.666	0.042831					75	59	2	0	0	0	0.31079	1	25274	25274		4.1166	0.79699	1	232080	+		26070	9954	17344	17509	35005	35005					-0.01818361113123501
YSYPAAHRYL	10	Unmodified	_YSYPAAHRYL_					0	0	0			REV__ENSG00000176692|ENST00000649859|FOXC2	REV__ENSG00000176692|ENST00000649859|FOXC2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2742309570312	2	620.809105	1239.60366	0.093898	5.8292E-05	-3.295	-0.0020456	-3.2011	-0.0019873	620.8069520091733	68.876	0.43501	68.876	68.641	69.076	0					42	16	4	0	0	0	0.31532	1	16081	16081		13.042	2.9685	1	120610	+		26071	10410	17345	17510	35006	35006					-0.006560672624345898
YSYRMLCNW	9	Unmodified	_YSYRMLCNW_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.2686157226562	2	618.270444	1234.52633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.275	1	30.275	29.775	30.775	0								0	0	0	0.2927	1	4379	4379		0.52476	0	1		+		26072	12152	17346	17511	35007	35007					-0.08154744794637736
YTADGIKYF	9	Unmodified	_YTADGIKYF_					0	0	0		ENSG00000166263|ENST00000376352|STXBP4	ENSG00000166263|ENST00000376352|STXBP4	ENSG00000166263|ENST00000376352|STXBP4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	539.30078125	2	539.266207	1076.51786	0.60192	0.00032459	-3.1705	-0.0017098	-2.5686	-0.0013852	539.2641279211583	53.498	0.46269	53.563	53.482	53.945	0.06543					29	20	2	0	0	0	0.1789	1	11217	11217		29.082	13.234	1	66734			26073	4148	17347	17512	35008	35008					-0.017336521679681027
YTAFLYNDQL	10	Unmodified	_YTAFLYNDQL_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000490178.1_1_7:6854391-6861977:-|nuORF	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.303955078125	2	624.300778	1246.587	0.29052	0.00018137	3.921	0.0024479	4.2116	0.0026293	624.8047554028202	93.338	0.49757	93.338	93.101	93.599	0					29	19	3	0	0	0	0.41617	1	23509	23509		10.151	1.1743	1	112230			26074	2193	17348	17513	35009	35009					-0.02642612939052924
YTAQKQQQQL	10	Unmodified	_YTAQKQQQQL_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	617.8433837890625	2	618.322576	1234.6306	0.013581	8.3973E-06	-2.8678	-0.0017732	-2.8542	-0.0017648	618.8237822556814	68.314	0.47328	68.377	68.221	68.694	0.063507					30	17	2	0	0	0	0.31616	1	15787	15787		10.074	1.9184	1	264330	+		26075	9216	17349	17514	35010	35010					0.02266996558091705
YTCLATNSRE	10	Unmodified	_YTCLATNSRE_					0	0	0		SDK2|p.G482E|1|0.11|ENSG00000069188|chr17:73431537-73431537|C/T|missense_variant	SDK2|p.G482E|1|0.11|ENSG00000069188|chr17:73431537-73431537|C/T|missense_variant	SDK2|p.G482E|1|0.11|ENSG00000069188|chr17:73431537-73431537|C/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2662963867188	2	579.266413	1156.51827	0.36337	0.00021049	0.61384	0.00035558	0.97721	0.00056607	579.2668062508519	95.479	0.84956	95.518	95.332	96.182	0.038872					57	40	2	0	0	0	0.44727	1	24138	24138		5.2969	0	1	1094600			26076	13358	17350	17515	35011	35011					-0.05372600510395387
YTDQRSLDR	9	Unmodified	_YTDQRSLDR_					0	0	0		nc|ENSG00000126216|Q96CW5-3|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8112182617188	2	577.283451	1152.55235	0.26073	0.00015052	-2.0861	-0.0012043	-1.8254	-0.0010538	577.2822392871777	36.269	0.4488	36.351	36.159	36.608	0.081711					30	18	3	0	0	0	0.25579	1	6057	6057		4.3292	0	1	37335			26077	2331	17351	17516	35012	35012					-0.01782436027156109
YTEADLDRI	9	Unmodified	_YTEADLDRI_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000534210.6_1_11:6559916-6579528:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7871704101562	2	548.269478	1094.5244	0.59615	0.00032685	-0.048527	-2.6606E-05	0.54762	0.00030024	548.2694250273489	55.095	1.0617	55.095	54.573	55.635	0					83	40	3	0	0	0	0.19376	1	11813	11813		25.399	0.40835	1	1368000			26078	4777	17352	17517	35013	35013					-0.019077590072583916
YTEDEWQKEWN	11	Unmodified	_YTEDEWQKEWN_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8857116699219	3	509.884406	1526.63139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.483	1	96.483	95.983	96.983	0								0	0	0	0.34185	1	24478	24478		0.094841	0	1				26079	5725	17353	17518	35014	35014					-0.11086253583516736
YTEGIEQRC	9	Unmodified	_YTEGIEQRC_					0	0	0			REV__ENSG00000103489|ENST00000261381|XYLT1	REV__ENSG00000103489|ENST00000261381|XYLT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.271240234375	2	549.747856	1097.48116	0.90116	0.00049541	-2.9434	-0.0016181	-2.0422	-0.0011227	550.2480561737098	80.303	0.25854	80.303	80.197	80.456	0					11	8	2	0	0	0	0.22912	1	19562	19562		18.146	1.9972	1	133330	+		26080	8480	17354	17519	35015	35015					-0.06368272056147362
YTEKLEEIK	9	Unmodified	_YTEKLEEIK_					0	0	0		ENSG00000106477|ENST00000223208|CEP41;ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41	ENSG00000106477|ENST00000223208|CEP41	ENSG00000106477|ENST00000223208|CEP41	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8109741210938	2	576.810979	1151.6074	0.25224	0.00014549	-0.18581	-0.00010718	0.066424	3.8314E-05	576.8108137981386	36.368	0.66114	36.45	36.235	36.896	0.081711					58	27	4	0	0	0	0.32112	1	6096	6096		3.9444	0	1	190980			26081	1524	17355	17520	35016	35016					0.037665577207462775
YTELQQAL	8	Unmodified	_YTELQQAL_					0	0	0		ENSG00000162517|ENST00000373703|PEF1	ENSG00000162517|ENST00000373703|PEF1	ENSG00000162517|ENST00000373703|PEF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	483.2498474121094	2	483.250557	964.486562	0.088204	4.2625E-05	-0.32095	-0.0001551	-0.23274	-0.00011247	483.2503875645718	38.207	0.76168	38.294	38.073	38.835	0.08688					63	28	4	0	0	0	0.50159	1	6699	6699		12.532	0	1	395610			26082	3832	17356	17521	35017	35017					0.002897747979545784
YTFEQECHE	9	Unmodified	_YTFEQECHE_					0	0	0			REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.2310180664062	2	593.229496	1184.44444	0.19339	0.00011472	1.4679	0.00087081	1.6613	0.00098553	593.2302976667379	56.092	0.62506	56.159	55.897	56.522	0.066452					65	21	4	0	0	0	0.3354	1	12106	12106		2.0598	0.21551	1	1370200	+		26083	9684	17357	17522	35018	35018					-0.14040568672703557
YTFHRGHLL	9	Unmodified	_YTFHRGHLL_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.3070678710938	2	572.306532	1142.59851	0.47017	0.00026908	0.65871	0.00037698	1.1289	0.00064607	572.3068843692224	96.909	0.94745	96.949	96.683	97.631	0.039772					129	46	4	0	0	0	0.10833	2	24454	24411;24454		30.637	30.637	1	2448800	+		26084	8604	17358	17523	35019;35020	35020					0.03291673665626149
YTFHRGHLL	9	Unmodified	_YTFHRGHLL_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	572.306532	1142.59851	0.43703	0.00025012	0.71874	0.00041134	1.1558	0.00066145	572.3068566603454	96.897	0.78167	96.897	96.657	97.438	0	-0.025698	2.6047E-05	NaN	30.637	121	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3286900	+		26085	8604	17358	17523							0.03291673665626149
YTFPTFKF	8	Unmodified	_YTFPTFKF_					0	0	0		nc|ENSG00000158163|Q8IYY4-2|DZIP1L;ENSG00000158163|ENST00000327532|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.7684936523438	2	525.768386	1049.52222	0.026252	1.3802E-05	-0.50143	-0.00026364	-0.47518	-0.00024983	525.7680601664848	73.324	0.86664	73.324	73.053	73.92	0					62	30	3	0	0	0	0.53345	1	17443	17443		5.7604	0.46354	1	300270			26086	3683	17359	17524	35021	35021					-0.0005614295439499983
YTFQDRCLL	9	Unmodified	_YTFQDRCLL_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2781982421875	2	579.784241	1157.55393	0.41977	0.00024338	-3.1874	-0.001848	-2.7676	-0.0016046	579.7818371387875	56.536	0.44938	56.602	56.494	56.944	0.066448					20	15	3	0	0	0	0.25174	1	12176	12176		7.2892	4.294	1	103500			26087	1796	17360	17525	35022	35022					-0.018545182627349277
YTGARHGRGGH	11	Unmodified	_YTGARHGRGGH_					0	0	0		ENST00000294309.7_2_11:68855463-68855787:+|nuORF	ENST00000294309.7_2_11:68855463-68855787:+|nuORF	ENST00000294309.7_2_11:68855463-68855787:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	584.7896118164062	2	584.78957	1167.56459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.45	1	20.45	19.95	20.95	0								0	0	0	0.34212	1	1613	1613		0	0	1				26088	5954	17361	17526	35023	35023					-0.01249354773426603
YTGHLALTSGN	11	Unmodified	_YTGHLALTSGN_					0	0	0		ENSG00000204859|ENST00000377674|ZBTB48	ENSG00000204859|ENST00000377674|ZBTB48	ENSG00000204859|ENST00000377674|ZBTB48	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.303466796875	2	567.28292	1132.55129	0.14558	8.2585E-05	3.6319	0.0020603	3.7775	0.0021429	567.2850146709701	59.284	0.32715	59.357	59.271	59.599	0.072342					18	11	2	0	0	0	0.297	1	12996	12996		18.373	2.5259	1	159180			26089	5497	17362	17527	35024	35024					-0.009686503960438131
YTGPYGPSFAF	11	Unmodified	_YTGPYGPSFAF_					0	0	0			REV__HOXB13|p.Y130S|1|0.42|ENSG00000159184|chr17:48728205-48728205|T/G|missense_variant	REV__HOXB13|p.Y130S|1|0.42|ENSG00000159184|chr17:48728205-48728205|T/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	603.7781982421875	2	603.776939	1205.53933	0.72971	0.00044058	-0.0043342	-2.6169E-06	0.72538	0.00043797	603.7768115222433	100.45	0.42384	100.49	100.34	100.76	0.042839					43	24	2	0	0	0	0.41369	1	25602	25602		1.1933	0.59184	1	106870	+		26090	12680	17363	17528	35025	35025					-0.05522267139235737
YTGRDGKIEKP	11	Unmodified	_YTGRDGKIEKP_					0	0	0		ENSG00000184330|ENST00000368729|S100A7A	ENSG00000184330|ENST00000368729|S100A7A	ENSG00000184330|ENST00000368729|S100A7A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.8150024414062	2	632.338227	1262.6619	0.43207	0.00027321	2.4645	0.0015584	2.8965	0.0018316	632.3398963093726	98.2	0.30596	98.2	98.071	98.377	0					23	14	2	0	0	0	0.31057	1	25002	25002		5.2969	1.3525	1	99641			26091	4968	17364	17529	35026	35026					0.04107569592179061
YTGYIFFL	8	Unmodified	_YTGYIFFL_					0	0	0			REV__ENST00000417811.2_3_7:32660640-32715635:-|nuORF	REV__ENST00000417811.2_3_7:32660640-32715635:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.2648315429688	2	512.262936	1022.51132	-0.3753	-0.00019225	2.4263	0.0012429	2.051	0.0010506	512.2642230289797	15.866	0.14602	15.866	15.783	15.929	0					26	18	2	0	0	0	0.54081	1	621	621		0.79363	0	1	21399	+		26092	10334	17365	17530	35027	35027					0.0009645467133623242
YTHDREVVL	9	Unmodified	_YTHDREVVL_					0	0	0			REV__ENST00000534315.5_1_11:126141345-126145243:+|nuORF	REV__ENST00000534315.5_1_11:126141345-126145243:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7747192382812	2	566.293288	1130.57202	0.14249	8.069E-05	-0.029801	-1.6876E-05	0.11269	6.3813E-05	566.2933861021253	59.068	0.54918	59.139	58.995	59.544	0.070477					35	21	2	0	0	0	0.24021	1	12963	12963		13.906	0	1	211470	+		26093	8659	17366	17531	35028	35028					0.011959399836086959
YTHDREVVL	9	Unmodified	_YTHDREVVL_					0	0	0			REV__ENST00000534315.5_1_11:126141345-126145243:+|nuORF	REV__ENST00000534315.5_1_11:126141345-126145243:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	566.293288	1130.57202	0.013599	7.701E-06	0.096376	5.4577E-05	0.10998	6.2278E-05	566.2934635420085	59.181	0.67659	59.181	58.979	59.656	0	0.021178	7.3185E-05	NaN	13.906	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200430	+		26094	8659	17366	17531							0.011959399836086959
YTHEEYISL	9	Unmodified	_YTHEEYISL_					0	0	0		nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5;nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-3|DCAF5	nc|ENSG00000139990|Q96JK2-3|DCAF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7719116210938	2	577.771854	1153.52915	0.209	0.00012075	-0.19125	-0.0001105	0.017754	1.0258E-05	577.7715319678754	51.028	0.82571	51.028	50.827	51.652	0					57	27	3	0	0	0	0.037705	1	10617	10617		46.021	15.384	1	471430			26095	2994	17367	17532	35029	35029					-0.041468748644547304
YTHEEYISL	9	Unmodified	_YTHEEYISL_					0	0	0		nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5;nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-3|DCAF5	nc|ENSG00000139990|Q96JK2-3|DCAF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7717895507812	2	577.771854	1153.52915	0.34866	0.00020144	-0.28264	-0.0001633	0.066015	3.8142E-05	577.7714578209681	50.952	0.83535	51.022	50.821	51.656	0.069878					61	32	3	0	0	0	0.10833	2	10492	10442;10492		30.637	11.38	1	423380			26096	2994	17367	17532	35030;35031	35031					-0.041468748644547304
YTHHKRDF	8	Unmodified	_YTHHKRDF_					0	0	0			REV__ENSG00000177383|ENST00000317897|MAGEF1	REV__ENSG00000177383|ENST00000317897|MAGEF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.297607421875	2	552.27269	1102.53083	0.29769	0.00016441	-1.0286	-0.00056806	-0.7309	-0.00040366	552.2722778222487	52.723	0.37099	52.723	52.527	52.898	0					18	12	2	0	0	0	0.3576	1	11185	11185		7.2892	0.93513	1	79846	+		26097	10427	17368	17533	35032	35032					-0.016337762652028687
YTIAQKYLF	9	Unmodified	_YTIAQKYLF_					0	0	0		ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant;ENSG00000066185|ENST00000372565|ZMYND12	ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7949829101562	2	573.813325	1145.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.536	1	79.536	79.036	80.036	0								0	0	0	0.23884	1	19321	19321		11.64	0.81637	1				26098	697	17369	17534	35033	35033					0.04511486654178043
YTIDPFILM	9	Unmodified	_YTIDPFILM_					0	0	0		ENST00000409600.5_1_2:201688026-201688140:+|nuORF	ENST00000409600.5_1_2:201688026-201688140:+|nuORF	ENST00000409600.5_1_2:201688026-201688140:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.3031616210938	2	556.788461	1111.56237	0.39788	0.00022153	-1.5929	-0.00088691	-1.195	-0.00066537	556.7879555049191	86.99	0.56694	87.018	86.859	87.426	0.027573					34	24	2	0	0	0	0.2229	1	21512	21512		19.257	2.1441	1	240780			26099	6396	17370	17535	35034	35034					0.011050356538817141
YTIDPFILM	9	Unmodified	_YTIDPFILM_					0	0	0		ENST00000409600.5_1_2:201688026-201688140:+|nuORF	ENST00000409600.5_1_2:201688026-201688140:+|nuORF	ENST00000409600.5_1_2:201688026-201688140:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	556.788461	1111.56237	0.29127	0.00016217	-3.1683	-0.0017641	-2.877	-0.0016019	557.2883394401002	86.981	0.26468	86.981	86.876	87.141	0	-0.018539	-0.00057702	NaN	32.305	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207660			26100	6396	17370	17535							0.011050356538817141
YTIEQRYL	8	Unmodified	_YTIEQRYL_					0	0	0		tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1	tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1	tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.769287109375	2	543.284931	1084.55531	0.24937	0.00013548	0.24439	0.00013277	0.49376	0.00026825	543.2849833845954	59.085	0.98736	59.155	58.891	59.878	0.070477					75	39	3	0	0	0	0.46028	2	13046	13046;13155		18.146	0.011366	1	807520			26101	13598	17371	17536	35035;35036	35035					0.016414390976706272
YTILFEVL	8	Unmodified	_YTILFEVL_					0	0	0			REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF	REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.2811584472656	2	499.283869	996.553185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.467	1	73.519	73.019	74.019	0.052574								0	0	0	0.38822	1	17310	17310		4.756	0	1		+		26102	9297	17372	17537	35037	35037					0.054770103598457354
YTILIKYGG	9	Unmodified	_YTILIKYGG_					0	0	0		FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2942504882812	2	514.294768	1026.57498	0.00073398	3.7748E-07	-0.47776	-0.00024571	-0.47703	-0.00024533	514.2946386047958	58.918	0.38554	58.918	58.708	59.093	0					23	13	2	0	0	0	0.19398	1	13038	13038		19.257	5.3509	1	168230			26103	5255	17373	17538	35038	35038					0.0627581510843811
YTILIKYGG	9	Unmodified	_YTILIKYGG_					0	0	0		FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	514.2946166992188	2	514.294768	1026.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.133	1	59.133	58.633	59.633	0								0	0	0	0.19239	1	13091	13091		19.257	6.7254	1				26104	5255	17373	17538	35039	35039					0.0627581510843811
YTILIKYGG	9	Unmodified	_YTILIKYGG_					0	0	0		FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.2943115234375	2	514.294768	1026.57498	0.22529	0.00011587	-0.95691	-0.00049213	-0.73162	-0.00037627	514.2942746217949	58.824	0.2989	58.895	58.721	59.02	0.070477					16	10	2	0	0	0	0.19398	1	12888	12888		19.257	5.3509	1	150030			26105	5255	17373	17538	35040	35040					0.0627581510843811
YTIPHSSQRF	10	Unmodified	_YTIPHSSQRF_					0	0	0			REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF	REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3130493164062	2	618.312012	1234.60947	-0.2488	-0.00015383	-1.9846	-0.0012271	-2.2334	-0.0013809	618.3100843676791	72.822	1.0205	72.874	72.489	73.51	0.052567					68	37	3	0	0	0	0.24525	1	17134	17134		28.495	3.0952	1	508680	+		26106	11885	17374	17539	35041	35041					0.0015503124920996925
YTIRSSVAI	9	Unmodified	_YTIRSSVAI_					0	0	0		tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	505.2769470214844	2	505.287474	1008.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.162	1	52.229	51.729	52.729	0.067173								0	0	0	0.2722	1	10835	10835		4.756	0.42677	1				26107	13528	17375	17540	35042	35042					0.056457429602687625
YTKESASSIL	10	Unmodified	_YTKESASSIL_					0	0	0		ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.287109375	2	549.787504	1097.56045	0.2604	0.00014316	0.12219	6.7178E-05	0.38259	0.00021034	550.2881851133238	91.076	1.1327	91.111	90.778	91.91	0.035446					100	40	4	0	0	0	0.25276	1	22707	22707		27.629	7.1752	1	364090			26108	819	17376	17541	35043	35043					0.015576981696312941
YTKESVKE	8	Unmodified	_YTKESVKE_					0	0	0		ENST00000356352.6_1_10:11962921-11963005:-|nuORF	ENST00000356352.6_1_10:11962921-11963005:-|nuORF	ENST00000356352.6_1_10:11962921-11963005:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.28533935546875	2	492.25584	982.497126	0.38506	0.00018955	-0.3395	-0.00016712	0.045568	2.2431E-05	492.2558250447573	88.566	0.46008	88.598	88.413	88.874	0.032265					26	19	2	0	0	0	0.3576	1	21981	21981		6.7232	0	1	147380			26109	6121	17377	17542	35044	35044					0.005177574523941075
YTKFGKCIHL	10	Unmodified	_YTKFGKCIHL_					0	0	0		ENSG00000196263|ENST00000308031|ZNF471	ENSG00000196263|ENST00000308031|ZNF471	ENSG00000196263|ENST00000308031|ZNF471	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.2327575683594	3	403.886476	1208.6376	0.63064	0.00025471	1.9747	0.00079754	2.6053	0.0010523	403.88749036763494	62.781	0.31063	62.781	62.631	62.941	0					12	10	2	0	0	0	0.31783	1	14181	14181		1.9064	0.45126	1	86378			26110	5213	17378	17543	35045	35045					0.041626379049830575
YTKLEQKLK	9	Unmodified	_YTKLEQKLK_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;nc|ENSG00000137216|Q5T3F8-2|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.84326171875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.217	1	88.217	87.717	88.717	0								0	0	0	0.27613	1	21964	21964		3.9444	0.66309	1				26111	2839	17379	17544	35046	35046					0.10690847091291289
YTKLEYLQV	9	Unmodified	_YTKLEYLQV_					0	0	0			REV__ENST00000467302.5_1_1:109235213-109236214:+|nuORF	REV__ENST00000467302.5_1_1:109235213-109236214:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.7951049804688	2	578.816064	1155.61758	0.59835	0.00034634	-0.049778	-2.8812E-05	0.54858	0.00031753	578.815874233623	64.455	0.27957	64.455	64.296	64.575	0					14	9	2	0	0	0	0.25644	1	14748	14748		3.9444	0	1	54957	+		26112	9164	17380	17545	35047	35047					0.045991654460067366
YTKMPPTVL	9	Unmodified	_YTKMPPTVL_					0	0	0			REV__ENSG00000183888|ENST00000329454|SRARP	REV__ENSG00000183888|ENST00000329454|SRARP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2877807617188	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.089	1	73.089	72.589	73.589	0								0	0	0	0.24643	1	17348	17348		10.074	0.72649	1		+		26113	10618	17381	17546	35048	35048					0.04036455373739045
YTKQHWSLQ	9	Unmodified	_YTKQHWSLQ_					0	0	0			REV__nc|ENSG00000099956|Q12824-2|SMARCB1	REV__nc|ENSG00000099956|Q12824-2|SMARCB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.7918701171875	2	595.80128	1189.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.512	1	51.582	51.082	52.082	0.069874								0	0	0	0.26267	1	10639	10639		6.7232	1.4263	1		+		26114	8361	17382	17547	35049	35049					0.0007964622052440973
YTKVLDKSYK	10	Unmodified	_YTKVLDKSYK_					0	0	0			REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	622.3475952148438	2	622.847896	1243.68124	-0.14035	-8.7417E-05	1.9541	0.0012171	1.8137	0.0011297	622.8491431080142	90.058	0.92351	90.092	89.959	90.883	0.034058					57	38	2	0	0	0	0.31747	1	22561	22561		5.7319	1.7875	1	648660	+		26115	8762	17383	17548	35050	35050					0.0691452588307584
YTLGPELETI	10	Unmodified	_YTLGPELETI_					0	0	0			REV__TNR|p.F438Lfs*18|1|0.52|ENSG00000116147|chr1:175393825-175393826|-/A|frameshift_variant	REV__TNR|p.F438Lfs*18|1|0.52|ENSG00000116147|chr1:175393825-175393826|-/A|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2616577148438	2	568.297704	1134.58086	0.11544	6.5604E-05	1.1972	0.00068037	1.3127	0.00074598	568.2982323706484	51.333	0.4754	51.333	51.152	51.628	0					39	15	3	0	0	0	0.28878	1	10740	10740		25.399	6.0374	1	144730	+		26116	8805	17384	17549	35051	35051					0.018948688294358362
YTLIKPFLKD	10	Unmodified	_YTLIKPFLKD_					0	0	0		ENSG00000177182|ENST00000325897|CLVS1	ENSG00000177182|ENST00000325897|CLVS1	ENSG00000177182|ENST00000325897|CLVS1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.36083984375	2	619.363182	1236.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.76	1	104.8	104.3	105.3	0.034004								0	0	0	0.33892	1	26793	26793		1.4819	0	1				26117	4693	17385	17550	35052	35052					0.10292304268136832
YTLIYICQP	9	Unmodified	_YTLIYICQP_					0	0	0		CSMD3|p.T3437I|1|0.27|ENSG00000164796|chr8:112244486-112244486|G/A|missense_variant	CSMD3|p.T3437I|1|0.27|ENSG00000164796|chr8:112244486-112244486|G/A|missense_variant	CSMD3|p.T3437I|1|0.27|ENSG00000164796|chr8:112244486-112244486|G/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.766357421875	2	557.286085	1112.55762	-0.25995	-0.00014487	0.79765	0.00044452	0.53769	0.00029965	557.2873368222508	42.517	0.17667	42.517	42.423	42.599	0					8	5	2	0	0	0	0.25281	1	8057	8057		6.7232	0	1	17840			26118	250	17386	17551	35053	35053					0.005841515110887485
YTLLRELL	8	Unmodified	_YTLLRELL_					0	0	0			REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.80804443359375	2	510.808042	1019.60153	0.42219	0.00021566	-0.3735	-0.00019079	0.048689	2.4871E-05	510.8078325366643	63.494	0.49325	63.565	63.365	63.859	0.071018					31	16	3	0	0	0	0.50159	1	14345	14345		12.532	0.89125	1	220680	+		26119	9725	17387	17552	35054	35054					0.09251503999769284
YTLMRATFS	9	Unmodified	_YTLMRATFS_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.3008422851562	2	545.273509	1088.53247	0.61473	0.0003352	0.45157	0.00024623	1.0663	0.00058143	545.2737020554939	54.649	0.64313	54.714	54.572	55.216	0.065128					43	28	2	0	0	0	0.23975	1	11626	11626		14.838	6.9281	1	129430			26120	5055	17388	17553	35055	35055					-0.008259032914565978
YTLNVNDPS	9	Unmodified	_YTLNVNDPS_					0	0	0		nc|ENSG00000162706|Q8N126-3|CADM3;ENSG00000162706|ENST00000368125|CADM3;nc|ENSG00000162706|Q8N126-2|CADM3	nc|ENSG00000162706|Q8N126-3|CADM3	nc|ENSG00000162706|Q8N126-3|CADM3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	512.2732543945312	2	511.743096	1021.47164	0.17777	9.0973E-05	-0.29304	-0.00014996	-0.11527	-5.8986E-05	512.2440663694673	35.805	0.20221	35.884	35.761	35.963	0.078831					11	7	2	0	0	0	0.23598	1	5917	5917		15.847	1.9411	1	21272			26121	3850	17389	17554	35056	35056					-0.038237170700540446
YTLSSRTDN	9	Unmodified	_YTLSSRTDN_					0	0	0			REV__ENST00000511274.1_1_4:73163985-73176842:-|nuORF	REV__ENST00000511274.1_1_4:73163985-73176842:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.2395629882812	2	528.751453	1055.48835	0.18541	9.8035E-05	1.282	0.00067788	1.4674	0.00077592	528.7522224973349	59.505	0.3783	59.578	59.356	59.735	0.072342					19	14	2	0	0	0	0.24791	1	13069	13069		6.2058	0	1	99909	+		26122	9747	17390	17555	35057	35057					-0.03717216184077188
YTLWYHLV	8	Unmodified	_YTLWYHLV_					0	0	0			REV__ENST00000479501.5_1_20:61943331-61950713:+|nuORF	REV__ENST00000479501.5_1_20:61943331-61950713:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	548.7872924804688	2	547.78711	1093.55967	0.2397	0.0001313	1.3191	0.00072261	1.5588	0.00085391	547.7900813195413	52.618	1.1418	52.618	52.246	53.388	0					182	42	6	0	0	0	0.47778	1	11184	11184		15.768	3.2367	1	2558300	+		26123	8414	17391	17556	35058	35058					0.01662948311195578
YTNLFLNFL	9	Unmodified	_YTNLFLNFL_					0	0	0		tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.8064575195312	2	572.8055	1143.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.33	1	103.33	102.83	103.83	0								0	0	0	0.26747	1	26555	26555		5.7319	0	1				26124	13493	17392	17557	35059	35059					0.030392001371410515
YTNTPPVI	8	Unmodified	_YTNTPPVI_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000525495.6_2_17:45219385-45266538:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	452.766357421875	2	452.742368	903.470183	0.54969	0.00024887	-0.27955	-0.00012657	0.27014	0.0001223	452.74214385817953	62.843	0.27665	62.843	62.693	62.969	0					13	9	2	0	0	0	0.53118	1	14250	14250		7.2892	2.5332	1	63746			26125	340	17393	17558	35060	35060					0.014586936318437438
YTPPTYLPHN	10	Unmodified	_YTPPTYLPHN_					0	0	0			REV__nc|ENSG00000099797|Q9NZ01-2|TECR	REV__nc|ENSG00000099797|Q9NZ01-2|TECR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.32666015625	2	601.795663	1201.57677	0.69608	0.0004189	-0.2727	-0.00016411	0.42338	0.00025479	601.7951824278973	54.401	0.11177	54.466	54.373	54.485	0.065128					6	4	2	0	0	0	0.31803	1	11488	11488		3.2813	0	1	49873	+		26126	12760	17394	17559	35061	35061					-0.01595175873626431
YTRALVDRE	9	Unmodified	_YTRALVDRE_					0	0	0			REV__ENSG00000232434|ENST00000436881|AJM1	REV__ENSG00000232434|ENST00000436881|AJM1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.1991577148438	2	561.798737	1121.58292	-0.15871	-8.9163E-05	-0.18787	-0.00010555	-0.34658	-0.00019471	562.3002475001077	25.687	0.21158	25.687	25.587	25.798	0					20	15	2	0	0	0	0.26021	1	3044	3044		0	0	1	12935	+		26127	11043	17395	17560	35062	35062					0.0269934235789151
YTRKAKRR	8	Unmodified	_YTRKAKRR_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	539.8328247070312	2	539.833249	1077.65194	0.25243	0.00013627	-1.0227	-0.00055208	-0.77027	-0.00041582	539.8325430619564	89.257	0.8772	89.257	89.03	89.908	0					76	34	3	0	0	0	0.53817	1	22235	22235		2.5775	0	1	305110	+		26128	10275	17396	17561	35063	35063					0.1162247116810704
YTRKHTFL	8	Unmodified	_YTRKHTFL_					0	0	0			REV__ENST00000493523.2_1_2:73302651-73316730:-|nuORF	REV__ENST00000493523.2_1_2:73302651-73316730:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.3087768554688	2	533.295633	1064.57671	0.47447	0.00025303	-1.0838	-0.00057796	-0.60928	-0.00032493	533.2949059745182	68.471	0.77182	68.471	68.211	68.983	0					37	28	2	0	0	0	0.53614	1	16092	16092		3.9444	1.6417	1	106360	+		26129	9212	17397	17562	35064	35064					0.04700868917052503
YTRLCWDQFQ	10	Unmodified	_YTRLCWDQFQ_					0	0	0			REV__nc|ENSG00000101746|O94818-2|NOL4	REV__nc|ENSG00000101746|O94818-2|NOL4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	453.8764343261719	3	453.876529	1358.60776	0.20565	9.3338E-05	-0.70885	-0.00032173	-0.5032	-0.00022839	453.87617329005457	37.688	0.8592	37.773	37.321	38.18	0.08448					48	30	2	0	0	0	0.47119	1	6429	6429		0.77653	0.14971	1	52650	+		26130	8437	17398	17563	35065	35065					-0.057203458310596034
YTSENLRQ	8	Unmodified	_YTSENLRQ_					0	0	0			REV__nc|ENSG00000130589|Q9BYK8|HELZ2	REV__nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.7484436035156	2	505.748713	1009.48287	-0.3186	-0.00016113	-0.071931	-3.6379E-05	-0.39053	-0.00019751	505.7487308697265	23.878	1.2008	23.878	23.624	24.825	0					285	102	5	0	0	0	0.53858	1	2484	2484		2.3027	0	1	1201300	+		26131	12789	17399	17564	35066	35066					-0.02148894975903204
YTSQDRFTD	9	Unmodified	_YTSQDRFTD_					0	0	0			REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2906494140625	2	566.74891	1131.48327	0.59226	0.00033566	-1.0504	-0.00059533	-0.45818	-0.00025967	566.7488930060442	79.791	0.39639	79.791	79.562	79.958	0					25	13	3	0	0	0	0.2446	1	19447	19447		7.2892	0	1	145920	+		26132	12360	17400	17565	35067	35067					-0.0772152004669806
YTSRIDEVL	9	Unmodified	_YTSRIDEVL_					0	0	0		ENSG00000145990|ENST00000379287|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	ENSG00000145990|ENST00000379287|GFOD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	548.78759765625	2	548.287671	1094.56079	0.39716	0.00021776	-0.19012	-0.00010424	0.20704	0.00011352	548.787079695788	52.56	1.0388	52.627	52.291	53.33	0.067169					155	44	5	0	0	0	0.23216	1	10922	10922		14.838	0.93222	1	1179300			26133	3271	17401	17566	35068	35068					0.01729117889499321
YTSSKLIGPI	10	Unmodified	_YTSSKLIGPI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	540.2642211914062	2	539.810782	1077.60701	0.58532	0.00031596	1.0632	0.00057391	1.6485	0.00088987	539.8109586314562	48.186	0.29627	48.266	48.004	48.301	0.080032					18	10	2	0	0	0	0.31689	1	9578	9578		8.1555	0.8663	1	47811			26134	7590	17402	17567	35069	35069					0.07131182791590618
YTSVRVHAPT	10	Unmodified	_YTSVRVHAPT_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8193359375	2	565.80128	1129.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.896	1	27.896	27.396	28.396	0								0	0	0	0.3327	1	3679	3679		8.7454	0.83525	1		+		26135	12994	17403	17568	35070	35070					0.028396462205364514
YTSVRVHAPT	10	Unmodified	_YTSVRVHAPT_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	565.8193969726562	2	565.80128	1129.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.849	1	27.931	27.431	28.431	0.082134								0	0	0	0.3327	1	3538	3538		8.7454	2.0222	1		+		26136	12994	17403	17568	35071	35071					0.028396462205364514
YTTKDGCALR	10	Unmodified	_YTTKDGCALR_					0	0	0			REV__ENSG00000198104|ENST00000641644|OR2T6	REV__ENSG00000198104|ENST00000641644|OR2T6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.78076171875	2	564.279323	1126.54409	-0.18264	-0.00010306	-0.14536	-8.2025E-05	-0.32801	-0.00018509	564.2789621227595	27.189	0.26821	27.189	27.016	27.284	0					22	17	2	0	0	0	0.4753	1	3467	3467		0	0	1	11285	+		26137	10883	17404	17569	35072	35072					-0.014117062681407333
YTTSYTQLNS	10	Unmodified	_YTTSYTQLNS_					0	0	0			REV__CON__Q2TBQ1	REV__CON__Q2TBQ1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.79443359375	2	589.272218	1176.52988	0.41461	0.00024432	0.34564	0.00020368	0.76026	0.000448	589.2724395054918	37.578	0.11776	37.578	37.494	37.612	0					5	3	2	0	0	0	0.31838	1	6566	6566		1.4819	0	1	27370	+	+	26138	7845	17405	17570	35073	35073					-0.05132080215412316
YTTVTFFTSA	10	Unmodified	_YTTVTFFTSA_					0	0	0			REV__ENSG00000180340|ENST00000315323|FZD2	REV__ENSG00000180340|ENST00000315323|FZD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2655029296875	2	569.276772	1136.53899	0.28286	0.00016103	-0.25557	-0.00014549	0.027294	1.5538E-05	569.2766756213666	57.763	0.53099	57.832	57.577	58.108	0.068375					47	19	3	0	0	0	0.42335	1	12618	12618		9.3831	0.63772	1	305850	+		26139	10507	17406	17571	35074	35074					-0.023816868590984086
YTVAWFVRD	9	Unmodified	_YTVAWFVRD_					0	0	0		ENSG00000135899|ENST00000258381|SP110;nc|ENSG00000135899|Q9HB58|SP110	ENSG00000135899|ENST00000258381|SP110	ENSG00000135899|ENST00000258381|SP110	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2666625976562	2	578.792924	1155.57129	0.31362	0.00018152	-1.4665	-0.00084881	-1.1529	-0.00066729	579.2932456625875	95.332	0.26392	95.371	95.239	95.503	0.038872					15	10	2	0	0	0	0.25579	1	23981	23981		4.3292	0	1	62441			26140	2752	17407	17572	35075	35075					-0.0002685466542970971
YTVDVYLEDSF	11	Unmodified	_YTVDVYLEDSF_					0	0	0			REV__ENST00000509934.1_1_5:35068382-35086329:-|nuORF	REV__ENST00000509934.1_1_5:35068382-35086329:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	450.888671875	3	450.874848	1349.60271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.722	1	48.722	48.222	49.222	0								0	0	0	0.3278	1	9925	9925		5.0475	3.1411	1		+		26141	8744	17408	17573	35076	35076					-0.058103712126467144
YTVEEEESP	9	Unmodified	_YTVEEEESP_					0	0	0			REV__nc|ENSG00000178997|Q8NHP7|EXD1	REV__nc|ENSG00000178997|Q8NHP7|EXD1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7314453125	2	541.729852	1081.44515	-0.031796	-1.7225E-05	1.2549	0.0006798	1.2231	0.00066257	542.7310037416182	28.048	0.54341	28.131	27.798	28.341	0.082132					54	31	3	0	0	0	0.33704	1	3539	3539		1.8442	0	1	20815	+		26142	10468	17409	17574	35077	35077					-0.09231450752031378
YTVIERPPF	9	Unmodified	_YTVIERPPF_					0	0	0			REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	561.289306640625	2	561.303124	1120.5917	0.81308	0.00045638	-1.5358	-0.00086203	-0.72269	-0.00040565	561.3021793621887	67.072	0.77397	67.137	66.923	67.697	0.065071					53	26	3	0	0	0	0.23216	1	15318	15318		14.838	0	1	328410	+		26143	8211	17410	17575	35078	35078					0.036223159943801875
YTVLTHLKN	9	Unmodified	_YTVLTHLKN_					0	0	0			REV__ENST00000431058.1_1_7:54724196-54724400:+|nuORF	REV__ENST00000431058.1_1_7:54724196-54724400:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.7991943359375	2	544.808574	1087.60259	0.51732	0.00028184	-0.060131	-3.276E-05	0.45719	0.00024908	544.8084789639719	53.946	0.65899	54.011	53.789	54.448	0.065128					66	24	4	0	0	0	0.29105	1	11450	11450		7.9102	0.62092	1	995470	+		26144	11849	17411	17576	35079	35079					0.062297183686723656
YTVMDAVIS	9	Unmodified	_YTVMDAVIS_					0	0	0			REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	499.7439270019531	2	499.746793	997.479033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.075	1	43.075	42.575	43.575	0								0	0	0	0.2428	1	8221	8221		10.824	2.0785	1		+		26145	13001	17412	17577	35080	35080					-0.0198070079397894
YTWDLWDR	8	Unmodified	_YTWDLWDR_					0	0	0			REV__nc|ENSG00000051108|Q15011-4|HERPUD1	REV__nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7852783203125	2	577.766906	1153.51926	0.28015	0.00016186	-3.938	-0.0022753	-3.6579	-0.0021134	577.7645573280156	56.991	0.17043	56.991	56.857	57.028	0					8	5	2	0	0	0	0.3576	1	12412	12412		4.756	0.42677	1	49335	+		26146	8053	17413	17578	35081	35081					-0.05136018079224414
YTWLWPPSW	9	Unmodified	_YTWLWPPSW_					0	0	0			REV__ENST00000320451.6_1_19:9678838-9695186:-|nuORF	REV__ENST00000320451.6_1_19:9678838-9695186:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.2981567382812	2	618.297842	1234.58113	0.19545	0.00012085	2.8167	0.0017415	3.0121	0.0018624	618.2982356069087	67.812	0.38046	67.875	67.664	68.045	0.063507					24	12	3	0	0	0	0.25174	1	15627	15627		7.2892	0	1	150640	+		26147	11393	17414	17579	35082	35082					-0.026776666600653698
YTWYDLSEP	9	Unmodified	_YTWYDLSEP_					0	0	0			REV__ENSG00000104267|ENST00000285379|CA2	REV__ENSG00000104267|ENST00000285379|CA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.8330688476562	2	587.258579	1172.50261	0.26243	0.00015411	-3.8352	-0.0022522	-3.5727	-0.0020981	587.2559144185115	73.302	0.83188	73.302	73.174	74.006	0					50	29	2	0	0	0	0.25051	1	17614	17614		7.9102	2.1783	1	381810	+		26148	8499	17415	17580	35083	35083					-0.07674563755813324
YTWYDLSEP	9	Unmodified	_YTWYDLSEP_					0	0	0			REV__ENSG00000104267|ENST00000285379|CA2	REV__ENSG00000104267|ENST00000285379|CA2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	587.258579	1172.50261	0.55673	0.00032695	-4.3883	-0.0025771	-3.8315	-0.0022501	587.2555026130071	73.347	0.72726	73.4	73.178	73.906	0.052574	0.04908	-0.00037769	NaN	7.9102	38	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245930	+		26149	8499	17415	17580							-0.07674563755813324
YTYYVWFVI	9	Unmodified	_YTYYVWFVI_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	627.3154296875	2	627.3157	1252.61685	0.36685	0.00023013	-0.86897	-0.00054512	-0.50212	-0.00031499	627.3151176635963	88.508	1.6351	88.538	87.965	89.6	0.030037					112	63	2	0	0	0	0.3182	1	21811	21811		4.3292	0.13973	1	233340			26150	4009	17416	17581	35084	35084					0.0006437079691750114
YVACCVKL	8	Unmodified	_YVACCVKL_					0	0	0		ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	449.729248046875	2	449.729892	897.445231	0.32213	0.00014487	-1.0393	-0.00046742	-0.71719	-0.00032254	449.7291621545858	49.997	0.61134	49.997	49.653	50.264	0					33	21	2	0	0	0	0.51887	1	10330	10330		10.183	3.8293	1	82528			26151	1893	17417	17582	35085	35085					-0.007594007667307778
YVACFETSSSN	11	Unmodified	_YVACFETSSSN_					0	0	0			REV__nc|ENSG00000144895|Q9BY44-2|EIF2A	REV__nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.7613525390625	2	604.250428	1206.4863	0.4395	0.00026557	-2.6321	-0.0015905	-2.1926	-0.0013249	604.2490542665977	71.745	0.14135	71.745	71.669	71.811	0					6	4	2	0	0	0	0.31042	1	16952	16952		6.2058	0.97511	1	64492	+		26152	9511	17418	17583	35086	35086					-0.10868012984201414
YVAFHSPCCGE	11	Unmodified	_YVAFHSPCCGE_					0	0	0			REV__ENST00000478069.1_1_4:95290987-95291311:+|nuORF	REV__ENST00000478069.1_1_4:95290987-95291311:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.830810546875	3	404.831931	1211.47396	0.23267	9.4193E-05	-2.9087	-0.0011775	-2.676	-0.0010833	404.83050466384526	101.97	0.31982	102.02	101.83	102.15	0.042656					47	28	2	0	0	0	0.40738	1	25971	25971		2.6312	0.88896	1	73609	+		26153	12062	17419	17584	35087	35087					-0.12331327928268365
YVAFYSNATG	10	Unmodified	_YVAFYSNATG_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	546.75341796875	2	546.753464	1091.49238	-0.49177	-0.00026888	0.49313	0.00026962	0.001367	7.4739E-07	546.7537276320508	41.43	0.64732	41.43	41.126	41.773	0					37	23	2	0	0	0	0.45239	1	7715	7715		4.3292	1.334	1	85098			26154	2482	17420	17585	35088	35088					-0.04971126690406891
YVAGADLAEI	10	Unmodified	_YVAGADLAEI_					0	0	0			REV__nc|ENSG00000144908|O75891-2|ALDH1L1	REV__nc|ENSG00000144908|O75891-2|ALDH1L1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	511.2634582519531	2	511.263665	1020.51278	0.32121	0.00016422	0.14656	7.4933E-05	0.46778	0.00023916	511.26367356271106	77.081	0.81263	77.081	76.467	77.28	0					62	29	3	0	0	0	0.35104	1	18475	18475		17.113	0	1	635260	+		26155	9512	17421	17586	35089	35089					0.003340439694284214
YVAGCTSWPVL	11	Unmodified	_YVAGCTSWPVL_					0	0	0			REV__tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	REV__tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.857421875	2	598.294442	1194.57433	-0.056557	-3.3838E-05	-2.9508	-0.0017655	-3.0074	-0.0017993	598.794436495399	90.685	0.30901	90.721	90.657	90.966	0.035446					16	12	2	0	0	0	0.31057	1	22579	22579		5.2969	1.3525	1	106300	+		26156	13244	17422	17587	35090	35090					-0.01517347602953123
YVAGDTSS	8	Unmodified	_YVAGDTSS_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	400.1775207519531	2	400.177058	798.339563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.03	1	102.07	101.57	102.57	0.042656								0	0	0	0.38822	1	26000	26000		6.3541	0	1		+		26157	12821	17423	17588	35091	35091					-0.06767322086989225
YVAHLLDIL	9	Unmodified	_YVAHLLDIL_					0	0	0		nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8084716796875	2	528.808042	1055.60153	0.36885	0.00019505	-0.049688	-2.6275E-05	0.31916	0.00016877	528.8079496034278	62.297	0.79449	62.297	62.067	62.861	0					58	28	3	0	0	0	0.14718	1	14146	14146		24.674	1.5255	1	585550			26158	7509	17424	17589	35092	35092					0.07595503999755238
YVAHLLDIL	9	Unmodified	_YVAHLLDIL_					0	0	0		nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.8092651367188	2	528.808042	1055.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.88	1	104.88	104.38	105.38	0								0	0	0	0.25361	1	27000	27000		8.5933	0	1				26159	7509	17424	17589	35093	35093					0.07595503999755238
YVALCEQLQ	9	Unmodified	_YVALCEQLQ_					0	0	0			REV__ENSG00000143412|ENST00000368947|ANXA9	REV__ENSG00000143412|ENST00000368947|ANXA9	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.7646484375	2	533.765517	1065.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.42	1	102.46	101.96	102.96	0.040916								0	0	0	0.25692	1	26118	26118		7.9102	0	1		+		26160	9463	17425	17590	35094	35094					-0.013656095283522518
YVANVGTNR	9	Unmodified	_YVANVGTNR_					0	0	0		nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.25970458984375	2	497.259248	992.503943	-0.010711	-5.3262E-06	0.49818	0.00024772	0.48747	0.0002424	497.25930649286977	26.53	0.24901	26.621	26.505	26.754	0.090376					30	19	2	0	0	0	0.32375	1	3155	3155		3.5965	3.5965	1	26695			26161	1183	17426	17591	35095	35095					0.007391151236220139
YVAQIYKYF	9	Unmodified	_YVAQIYKYF_					0	0	0		nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8131713867188	2	597.813325	1193.6121	-0.62157	-0.00037158	-0.61135	-0.00036547	-1.2329	-0.00073705	597.813019115742	41.786	0.90561	41.786	41.459	42.365	0					53	32	2	0	0	0	0.3354	1	7991	7991		2.0598	0.21551	1	46509			26162	2396	17427	17592	35096	35096					0.02303486654182052
YVAVQHFSL	9	Unmodified	_YVAVQHFSL_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.7692260742188	2	532.282192	1062.54983	0.36196	0.00019266	-0.2089	-0.00011119	0.15306	8.1472E-05	532.282096816777	60.542	1.2032	60.615	60.211	61.414	0.073421					105	41	4	0	0	0	0.22344	1	13575	13575		15.847	7.937	1	820850			26163	2322	17428	17593	35097	35097					0.021057603058579843
YVCERMLEF	9	Unmodified	_YVCERMLEF_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.7979125976562	2	595.272652	1188.53075	-0.10187	-6.0641E-05	-4.1012	-0.0024413	-4.2031	-0.002502	595.2696271065471	90.33	0.53291	90.364	90.195	90.728	0.034065					28	21	2	0	0	0	0.20004	1	22408	22408		23.148	1.4018	1	139710			26164	2639	17429	17594	35098	35098					-0.055972803717395436
YVCKLEEPA	9	Unmodified	_YVCKLEEPA_					0	0	0		PDILT|p.S546C|1|0.19|ENSG00000169340|chr16:20359437-20359437|G/C|missense_variant	PDILT|p.S546C|1|0.19|ENSG00000169340|chr16:20359437-20359437|G/C|missense_variant	PDILT|p.S546C|1|0.19|ENSG00000169340|chr16:20359437-20359437|G/C|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	526.2418212890625	2	526.260068	1050.50558	0.35615	0.00018743	0.35254	0.00018553	0.70869	0.00037296	526.7615184925863	68.308	0.26208	68.371	68.192	68.454	0.063507					17	9	3	0	0	0	0.25504	1	15735	15735		4.756	0.42677	1	83587			26165	7665	17430	17595	35099	35099					-0.01765011902648439
YVCRTQGVE	9	Unmodified	_YVCRTQGVE_					0	0	0		nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.7529907226562	2	527.752941	1053.49133	-0.37037	-0.00019546	0.15124	7.9817E-05	-0.21913	-0.00011565	527.7530064214711	18.074	0.35418	18.074	17.966	18.32	0					59	43	2	0	0	0	0.35102	1	1046	1046		0	0	1	22102			26166	1404	17431	17596	35100	35100					-0.03327664330913649
YVDAQQNY	8	Unmodified	_YVDAQQNY_					0	0	0			REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	500.1149597167969	2	500.722164	999.429775	0.30677	0.0001536	-0.21828	-0.0001093	0.088482	4.4305E-05	500.7219520646817	52.44	0.45742	52.507	52.267	52.724	0.067173					23	17	2	0	0	0	0.3576	1	10881	10881		2.8892	0	1	90835	+		26167	10784	17432	17597	35101	35101					-0.06996272758578925
YVDAQQNY	8	Unmodified	_YVDAQQNY_					0	0	0			REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	500.722164	999.429775	0.19653	9.8406E-05	-0.36023	-0.00018037	-0.1637	-8.1967E-05	500.7220794349506	52.488	0.33992	52.488	52.305	52.645	0	-0.0097027	-6.8791E-05	NaN	2.8892	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112380	+		26168	10784	17432	17597							-0.06996272758578925
YVDDLLELEE	10	Unmodified	_YVDDLLELEE_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.8060913085938	2	619.295359	1236.57616	-0.52515	-0.00032522	-2.0866	-0.0012922	-2.6117	-0.0016174	619.2942830813082	58.738	0.5929	58.738	58.386	58.979	0					44	20	3	0	0	0	0.30149	1	13019	13019		20.454	11.071	1	117550			26169	4382	17433	17598	35102	35102					-0.032660601040106485
YVDEGIQL	8	Unmodified	_YVDEGIQL_					0	0	0		BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant	BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant	BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	468.7372131347656	2	468.737283	935.460012	0.009842	4.6133E-06	0.12201	5.7191E-05	0.13185	6.1804E-05	468.73713865917244	59.282	0.56564	59.282	59.062	59.628	0					30	21	2	0	0	0	0.4772	1	13119	13119		15.847	0	1	206730			26170	94	17434	17599	35103	35103					-0.010299140933739181
YVDEGIQL	8	Unmodified	_YVDEGIQL_					0	0	0		BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant	BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant	BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	468.73736572265625	2	468.737283	935.460012	-0.046693	-2.1887E-05	-0.15576	-7.3009E-05	-0.20245	-9.4896E-05	468.73711771299713	59.123	0.47776	59.194	59.093	59.571	0.07093					33	18	2	0	0	0	0.4772	2	13013	12960;13013		15.847	0	1	159480			26171	94	17434	17599	35104;35105	35105					-0.010299140933739181
YVDLKSLRH	9	Unmodified	_YVDLKSLRH_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	565.8191528320312	2	565.819473	1129.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.552	1	28.552	28.052	29.052	0								0	0	0	0.2927	1	3872	3872		0.52476	0	1				26172	694	17435	17600	35106	35106					0.06476523117203214
YVDPSLHLI	9	Unmodified	_YVDPSLHLI_					0	0	0			REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.2501220703125	2	528.78985	1055.56515	0.4929	0.00026064	-0.61556	-0.0003255	-0.12265	-6.4858E-05	529.2912154704077	63.744	0.34487	63.744	63.474	63.819	0					16	11	2	0	0	0	0.2446	1	14450	14450		11.64	0	1	94104	+		26173	8027	17436	17601	35107	35107					0.03958627103043
YVDPSLHLI	9	Unmodified	_YVDPSLHLI_					0	0	0			REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	528.78985	1055.56515	0.42507	0.00022477	-0.21044	-0.00011128	0.21463	0.00011349	528.7897230735101	63.521	0.31757	63.592	63.414	63.732	0.071018	-0.076149	0.00029872	NaN	11.64	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77877	+		26174	8027	17436	17601							0.03958627103043
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.7974853515625	2	523.797675	1045.5808	0.15365	8.0479E-05	-0.14342	-7.5124E-05	0.010224	5.3555E-06	523.7975440441201	51.792	1.1163	51.792	51.529	52.645	0					90	38	4	0	0	0	0.0043591	2	10857	10857;10900		96.367	48.618	1	2401800			26175	3038	17437	17602	35108;35109	35108					0.059829136200733046
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.7974853515625	2	523.797675	1045.5808	0.17097	8.9556E-05	-0.038849	-2.0349E-05	0.13212	6.9206E-05	523.7975627240837	51.759	1.0214	51.828	51.585	52.606	0.068977					88	38	4	0	0	0	0.0043591	2	10701	10701;10743		96.367	48.618	1	1918300			26176	3038	17437	17602	35110;35111	35110					0.059829136200733046
YVDPYELASL	10	Unmodified	_YVDPYELASL_					0	0	0		ENSG00000163964|ENST00000392391|PIGX;nc|ENSG00000163964|Q8TBF5-2|PIGX	ENSG00000163964|ENST00000392391|PIGX	ENSG00000163964|ENST00000392391|PIGX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8140869140625	2	585.289879	1168.56521	0.93351	0.00054638	-0.60642	-0.00035493	0.32709	0.00019144	585.2894730330314	79.929	0.45824	79.929	79.711	80.169	0					23	15	2	0	0	0	0.027976	1	19457	19457		82.529	59.793	1	331790			26177	3970	17438	17603	35112	35112					-0.012334176876493075
YVDPYELASL	10	Unmodified	_YVDPYELASL_					0	0	0		ENSG00000163964|ENST00000392391|PIGX;nc|ENSG00000163964|Q8TBF5-2|PIGX	ENSG00000163964|ENST00000392391|PIGX	ENSG00000163964|ENST00000392391|PIGX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.814208984375	2	585.289879	1168.56521	0.81099	0.00047466	-0.52807	-0.00030907	0.28292	0.00016559	585.2896023349576	79.922	0.48027	79.948	79.742	80.222	0.026436					32	16	3	0	0	0	0.052998	1	19290	19290		72.968	52.387	1	268440			26178	3970	17438	17603	35113	35113					-0.012334176876493075
YVDTDILFL	9	Unmodified	_YVDTDILFL_					0	0	0		GXYLT1|p.L311Qfs*11|1|0.09|ENSG00000151233|chr12:42097966-42097966|A/-|frameshift_variant;nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	GXYLT1|p.L311Qfs*11|1|0.09|ENSG00000151233|chr12:42097966-42097966|A/-|frameshift_variant	GXYLT1|p.L311Qfs*11|1|0.09|ENSG00000151233|chr12:42097966-42097966|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2601928710938	2	549.789515	1097.56448	0.88291	0.00048541	0.12289	6.7563E-05	1.0058	0.00055298	549.789245503787	81.238	0.64159	81.238	80.99	81.632	0					48	21	3	0	0	0	0.25051	1	19925	19925		4.3292	0	1	793990			26179	3451	17439	17604	35114	35114					0.01959787663327006
YVDTTADL	8	Unmodified	_YVDTTADL_					0	0	0		ENSG00000249481|ENST00000674044|SPATS1	ENSG00000249481|ENST00000674044|SPATS1	ENSG00000249481|ENST00000674044|SPATS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	449.2127685546875	2	449.21364	896.412728	0.19679	8.8401E-05	-1.2666	-0.00056896	-1.0698	-0.00048056	449.21301187616587	72.027	0.1304	72.027	71.972	72.103	0					6	4	2	0	0	0	0.51887	1	17041	17041		10.183	0	1	79128			26180	5679	17440	17605	35115	35115					-0.03962193364395716
YVDTTADL	8	Unmodified	_YVDTTADL_					0	0	0		ENSG00000249481|ENST00000674044|SPATS1	ENSG00000249481|ENST00000674044|SPATS1	ENSG00000249481|ENST00000674044|SPATS1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	449.21364	896.412728	0.046078	2.0699E-05	-0.16466	-7.3969E-05	-0.11859	-5.327E-05	449.21360467116335	72.001	0.10789	72.057	71.98	72.088	0.055931	0.015028	0.0002579	NaN	10.183	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18205			26181	5679	17440	17605							-0.03962193364395716
YVDVLPEEAVG	11	Unmodified	_YVDVLPEEAVG_					0	0	0		ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.301513671875	2	595.800611	1189.58667	0.52567	0.00031319	4.3927	0.0026172	4.9184	0.0029304	595.8029940430459	67.584	0.25798	67.648	67.406	67.664	0.063507					11	8	2	0	0	0	0.31042	1	15491	15491		6.2058	0.97511	1	124130			26182	2173	17441	17606	35116	35116					-0.0005403265890890907
YVDYLDDPD	9	Unmodified	_YVDYLDDPD_					0	0	0			REV__nc|ENSG00000132692|Q96GW7-2|BCAN	REV__nc|ENSG00000132692|Q96GW7-2|BCAN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.732177734375	2	557.732394	1113.45024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.887	1	21.989	21.489	22.489	0.10178								0	0	0	0.29525	1	1874	1874		0	0	1		+		26183	9127	17442	17607	35117	35117					-0.10195146889441276
YVEDPITGR	9	Unmodified	_YVEDPITGR_					0	0	0		ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63	ENST00000460036.1_1_3:189507541-189590785:+|nuORF	ENST00000460036.1_1_3:189507541-189590785:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7257690429688	2	525.266739	1048.51892	-0.15878	-8.3403E-05	-0.65132	-0.00034212	-0.81011	-0.00042552	525.2662073046216	30.052	0.34513	30.052	29.941	30.286	0					22	14	2	0	0	0	0.25644	1	4293	4293		3.9444	1.3669	1	18997			26184	166	17443	17608	35118	35118					-0.00339437799038933
YVEDTSVYI	9	Unmodified	_YVEDTSVYI_					0	0	0			REV__ENSG00000088451|ENST00000261296|TGDS	REV__ENSG00000088451|ENST00000261296|TGDS	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.7601928710938	2	544.760955	1087.50736	0.36739	0.00020014	-0.21789	-0.0001187	0.1495	8.1439E-05	544.7609532404718	90.983	1.1059	90.983	90.602	91.707	0					58	40	3	0	0	0	0.29576	1	22722	22722		7.2892	0	1	100440	+		26185	8286	17444	17609	35119	35119					-0.03289679613044427
YVEHAVVDHT	10	Unmodified	_YVEHAVVDHT_					0	0	0			REV__nc|ENSG00000147044|O14936-5|CASK	REV__nc|ENSG00000147044|O14936-5|CASK	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2828369140625	2	585.28292	1168.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.658	1	19.754	19.254	20.254	0.095232								0	0	0	0.34018	1	1327	1327		0	0	1		+		26186	9556	17445	17610	35120	35120					-0.02624650396069228
YVEHYPLACL	10	Unmodified	_YVEHYPLACL_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2930908203125	2	604.294442	1206.57433	0.53975	0.00032617	-2.0129	-0.0012164	-1.4731	-0.00089019	604.2923201146039	68.961	0.42902	69.023	68.739	69.168	0.062119					30	13	3	0	0	0	0.25965	1	15908	15908		26.884	4.1474	1	226910	+		26187	7975	17446	17611	35121	35121					-0.020693476029464364
YVEKFHLQ	8	Unmodified	_YVEKFHLQ_					0	0	0		ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.268310546875	2	532.282192	1062.54983	0.47356	0.00025207	-0.27896	-0.00014849	0.1946	0.00010358	532.2821022766212	60.595	1.1584	60.595	60.26	61.418	0					103	41	3	0	0	0	0.49441	1	13739	13739		13.508	0.97634	1	869620			26188	5632	17447	17612	35122	35122					0.021057603058579843
YVEKYRVF	8	Unmodified	_YVEKYRVF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2394409179688	2	552.297842	1102.58113	0.5964	0.00032939	-1.4551	-0.00080366	-0.85873	-0.00047428	552.2971522223833	63.461	0.16682	63.532	63.477	63.643	0.071018					8	5	2	0	0	0	0.3576	1	14305	14305		5.7604	1.0044	1	38527	+		26189	11085	17448	17613	35123	35123					0.033943333399292897
YVEMSTFDIA	10	Unmodified	_YVEMSTFDIA_					0	0	0		ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.2681884765625	2	588.26809	1174.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.367	1	98.367	97.867	98.867	0								0	0	0	0.33711	1	25049	25049		3.5965	2.1146	1				26190	2758	17449	17614	35124	35124					-0.05865350456383567
YVEPIQSF	8	Unmodified	_YVEPIQSF_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.7476501464844	2	491.74765	981.480748	0.11112	5.4641E-05	0.19592	9.6343E-05	0.30703	0.00015098	491.7476193220543	104.97	0.3469	104.97	104.78	105.13	0					49	33	2	0	0	0	0.48651	2	27011	27011;27015		14.582	0	1	50099	+		26191	8025	17450	17615	35125;35126	35125					-0.010733237137060314
YVEPIQSF	8	Unmodified	_YVEPIQSF_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7475280761719	2	491.74765	981.480748	0.33282	0.00016366	-0.22078	-0.00010857	0.11203	5.5093E-05	491.74742288153965	104.92	0.27319	104.96	104.84	105.11	0.034004					48	29	2	0	0	0	0.45077	2	26840	26840;26845		19.439	4.8573	1	62249	+		26192	8025	17450	17615	35127;35128	35127					-0.010733237137060314
YVEPIQSF	8	Unmodified	_YVEPIQSF_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.7485656738281	2	491.74765	981.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.79	1	104.82	104.32	105.32	0.034004								0	0	0	0.385	1	26801	26801		19.439	1.304	1		+		26193	8025	17450	17615	35129	35129					-0.010733237137060314
YVEPIQSF	8	Unmodified	_YVEPIQSF_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	491.74765	981.480748	0.11112	5.4641E-05	0.19592	9.6343E-05	0.30703	0.00015098	491.7476193220543	104.97	0.3469	104.97	104.78	105.13	0	0.0039406	0.00020685	NaN	19.439	49	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50099	+		26194	8025	17450	17615							-0.010733237137060314
YVEPIQSF	8	Unmodified	_YVEPIQSF_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	491.74765	981.480748	0.33282	0.00016366	-0.22078	-0.00010857	0.11203	5.5093E-05	491.74742288153965	104.92	0.27319	104.96	104.84	105.11	0.034004	-0.0039406	-0.00020297	NaN	19.439	48	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62249	+		26195	8025	17450	17615							-0.010733237137060314
YVEQDDEI	8	Unmodified	_YVEQDDEI_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	505.71917724609375	2	505.719287	1009.42402	0.53015	0.00026811	-0.57912	-0.00029287	-0.048967	-2.4764E-05	505.71887080418264	67.101	0.52848	67.101	66.9	67.428	0					24	19	2	0	0	0	0.43379	1	15512	15512		21.747	6.9084	1	188760	+		26196	8246	17451	17616	35130	35130					-0.08031416060907759
YVFDNWLQ	8	Unmodified	_YVFDNWLQ_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.7584838867188	2	542.758549	1083.50255	0.20227	0.00010978	-1.36	-0.00073818	-1.1578	-0.00062839	542.7577116212212	39.029	0.51676	39.029	38.741	39.258	0					30	20	2	0	0	0	0.53894	1	7018	7018		2.0598	0	1	44155			26197	399	17452	17617	35131	35131					-0.03586518965153118
YVFDNWLQ	8	Unmodified	_YVFDNWLQ_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.7584228515625	2	542.758549	1083.50255	0.34924	0.00018955	-1.8407	-0.00099905	-1.4914	-0.00080949	542.7576152827062	38.895	0.50111	38.982	38.652	39.153	0.08688					24	18	2	0	0	0	0.53894	1	6823	6823		2.0598	0.21551	1	37107			26198	399	17452	17617	35132	35132					-0.03586518965153118
YVFFLICY	8	Unmodified	_YVFFLICY_					0	0	0		ENST00000469535.5_1_1:207940917-207941046:+|nuORF	ENST00000469535.5_1_1:207940917-207941046:+|nuORF	ENST00000469535.5_1_1:207940917-207941046:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.777099609375	2	534.267164	1066.51978	0.49903	0.00026661	0.020461	1.0932E-05	0.51949	0.00027754	534.2668584453966	78.942	0.78511	78.972	78.738	79.523	0.030159					39	27	3	0	0	0	0.3576	1	19022	19022		6.3541	0	1	115400			26199	6658	17453	17618	35133	35133					-0.010823146837083186
YVFGQHSDL	9	Unmodified	_YVFGQHSDL_					0	0	0			REV__ENST00000466787.1_1_21:40763088-40763391:+|nuORF	REV__ENST00000466787.1_1_21:40763088-40763391:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	533.2901000976562	2	533.253631	1064.49271	0.61724	0.00032914	-2.0797	-0.001109	-1.4624	-0.00077986	533.2513320918677	47.352	0.66381	47.436	47.124	47.788	0.083096					81	26	6	0	0	0	0.1478	1	9405	9405		34.102	11.65	1	249150	+		26200	12000	17454	17619	35134	35134					-0.036957069705295
YVFHSFEAGF	10	Unmodified	_YVFHSFEAGF_					0	0	0		ENST00000300101.2_1_12:57396295-57396352:-|nuORF	ENST00000300101.2_1_12:57396295-57396352:-|nuORF	ENST00000300101.2_1_12:57396295-57396352:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.2775268554688	2	602.277106	1202.53966	0.50345	0.00030322	-0.70687	-0.00042573	-0.20341	-0.00012251	602.276658284007	38.147	0.36149	38.234	38.073	38.435	0.08688					22	13	2	0	0	0	0.45794	1	6617	6617		3.2813	0.28607	1	38773			26201	5972	17455	17620	35135	35135					-0.053508474193904476
YVFLSNLSL	9	Unmodified	_YVFLSNLSL_					0	0	0		OR5B12|p.F59V|1|0.14|ENSG00000172362|chr11:58439977-58439977|A/C|missense_variant	OR5B12|p.F59V|1|0.14|ENSG00000172362|chr11:58439977-58439977|A/C|missense_variant	OR5B12|p.F59V|1|0.14|ENSG00000172362|chr11:58439977-58439977|A/C|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.3003540039062	2	528.292225	1054.5699	0.55343	0.00029238	2.0051	0.0010593	2.5586	0.0013517	528.2920024550718	97.325	0.95636	97.366	97.076	98.033	0.040855					192	47	6	0	0	0	0.1182	2	24625	24625;24662		28.487	2.3393	1	2244400			26202	7657	17456	17621	35136;35137	35136					0.04479511245813228
YVFPCFDE	8	Unmodified	_YVFPCFDE_					0	0	0		LVRN|p.S464Lfs*15|1|0.18|ENSG00000172901|chr5:115999771-115999771|T/-|frameshift_variant;nc|ENSG00000172901|Q6Q4G3-2|LVRN;ENSG00000172901|ENST00000357872|LVRN	LVRN|p.S464Lfs*15|1|0.18|ENSG00000172901|chr5:115999771-115999771|T/-|frameshift_variant	LVRN|p.S464Lfs*15|1|0.18|ENSG00000172901|chr5:115999771-115999771|T/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.7173156738281	2	510.212586	1018.41062	-0.10708	-5.4635E-05	-1.4123	-0.00072059	-1.5194	-0.00077523	510.21214677276356	40.305	0.84666	40.395	40.164	41.011	0.089642					43	32	3	0	0	0	0.3576	1	7382	7382		6.3541	0.59368	1	91973			26203	4518	17457	17622	35138	35138					-0.09784945373837672
YVFQEIKEF	9	Unmodified	_YVFQEIKEF_					0	0	0			REV__ENSG00000031698|ENST00000234677|SARS1	REV__ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8086547851562	2	601.808239	1201.60193	0.37302	0.00022449	0.81493	0.00049043	1.1879	0.00071492	601.8085925023553	71.559	0.32526	71.618	71.464	71.789	0.058578					19	11	2	0	0	0	0.26684	1	16739	16739		10.824	0	1	203250	+		26204	8011	17458	17623	35139	35139					0.009188789289282795
YVFQEIKEF	9	Unmodified	_YVFQEIKEF_					0	0	0			REV__ENSG00000031698|ENST00000234677|SARS1	REV__ENSG00000031698|ENST00000234677|SARS1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	601.808239	1201.60193	0.37302	0.00022449	0.81493	0.00049043	1.1879	0.00071492	601.8085925023553	71.559	0.32526	71.618	71.464	71.789	0.058578	-0.0060994	-0.00015917	NaN	10.824	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203250	+		26205	8011	17458	17623							0.009188789289282795
YVFWWTAA	8	Unmodified	_YVFWWTAA_					0	0	0			REV__ENST00000572176.1_1_17:3838413-3839645:-|nuORF	REV__ENST00000572176.1_1_17:3838413-3839645:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	522.7738647460938	2	522.252903	1042.49125	0.53903	0.00028151	-4.3955	-0.0022956	-3.8565	-0.0020141	522.2507007803531	64.418	0.27625	64.418	64.356	64.632	0					11	9	2	0	0	0	0.3576	1	14692	14692		8.5933	0.68312	1	66660	+		26206	8185	17459	17624	35140	35140					-0.028292962686464307
YVFWWTAA	8	Unmodified	_YVFWWTAA_					0	0	0			REV__ENST00000572176.1_1_17:3838413-3839645:-|nuORF	REV__ENST00000572176.1_1_17:3838413-3839645:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	522.252903	1042.49125	0.36575	0.00019102	-6.3828	-0.0033334	-6.017	-0.0031424	522.2506219934185	64.383	0.27687	64.453	64.26	64.537	0.070206	0.017475	-0.001046	NaN	8.5933	24	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80720	+		26207	8185	17459	17624							-0.028292962686464307
YVGDLGSLLNS	11	Unmodified	_YVGDLGSLLNS_					0	0	0			REV__tr|U7SSI3|U7SSI3_FUSNUDUF3100domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01460PE=4SV=1	REV__tr|U7SSI3|U7SSI3_FUSNUDUF3100domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01460PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2938842773438	2	569.292953	1136.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.248	1	25.344	24.844	25.844	0.096073								0	0	0	0.34212	1	2791	2791		0	0	1		+		26208	13151	17460	17625	35141	35141					0.008531005439181172
YVGIDPAAL	9	Unmodified	_YVGIDPAAL_					0	0	0			REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.17181396484375	2	459.750193	917.485833	-0.25405	-0.0001168	-1.1639	-0.00053509	-1.4179	-0.00065189	459.751000076767	28.165	0.70118	28.247	27.709	28.41	0.082134					57	42	2	0	0	0	0.26021	1	3490	3490		0	0	1	21533	+		26209	9748	17461	17626	35142	35142					0.023789801488874218
YVGRGLNSDQ	10	Unmodified	_YVGRGLNSDQ_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	554.7734375	2	554.772719	1107.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.247	1	22.348	21.848	22.848	0.10178								0	0	0	0.34018	1	1973	1973		0	0	1				26210	4402	17462	17627	35143	35143					-0.018578210558871433
YVGSGERIP	9	Unmodified	_YVGSGERIP_					0	0	0			REV__ENSG00000118156|ENST00000391901|ZNF541	REV__ENSG00000118156|ENST00000391901|ZNF541	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	489.2687072753906	2	489.256174	976.497795	0.14009	6.8541E-05	1.6173	0.00079126	1.7574	0.0008598	489.2567965832539	38.774	0.95254	38.774	38.426	39.379	0					57	35	2	0	0	0	0.29576	1	7069	7069		7.2892	1.5288	1	72656	+		26211	8837	17463	17628	35144	35144					0.008605968920733176
YVGSIEYMKEF	11	Unmodified	_YVGSIEYMKEF_					0	0	0			REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.8845520019531	3	455.88469	1364.63224	0.21693	9.8897E-05	0.29629	0.00013507	0.51322	0.00023397	455.88463529575336	104.86	0.25041	104.86	104.77	105.02	0					35	25	2	0	0	0	0.40738	1	26994	26994		2.6312	0.37851	1	272170	+		26212	13075	17464	17629	35145	35145					-0.035491304681954716
YVGSIEYMKEF	11	Unmodified	_YVGSIEYMKEF_					0	0	0			REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	455.8847351074219	3	455.88469	1364.63224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.41	1	104.41	103.91	104.91	0								0	0	0	0.33044	1	26863	26863		4.1166	0	1		+		26213	13075	17464	17629	35146	35146					-0.035491304681954716
YVGSIEYMKEF	11	Unmodified	_YVGSIEYMKEF_					0	0	0			REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.8851318359375	3	455.88469	1364.63224	0.26069	0.00011884	0.22707	0.00010352	0.48776	0.00022236	455.88472039044484	104.38	0.22427	104.42	104.31	104.53	0.034004					32	20	2	0	0	0	0.40738	1	26702	26702		2.6312	0.19645	1	389620	+		26214	13075	17464	17629	35147	35147					-0.035491304681954716
YVGSIEYMKEF	11	Unmodified	_YVGSIEYMKEF_					0	0	0			REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	455.8851318359375	3	455.88469	1364.63224	0.25591	0.00011667	0.39879	0.0001818	0.65471	0.00029847	456.219226547879	104.55	0.42723	104.58	104.39	104.81	0.034004					72	41	3	0	0	0	0.31089	1	26702	26702		2.6312	0.19645	1	613350	+		26215	13075	17464	17629	35148	35148					-0.035491304681954716
YVGSLTTPPLT	11	Unmodified	_YVGSLTTPPLT_					0	0	0		ENST00000568175.1_3_16:29630108-29634155:-|nuORF	ENST00000568175.1_3_16:29630108-29634155:-|nuORF	ENST00000568175.1_3_16:29630108-29634155:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.8131713867188	2	574.813522	1147.61249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.777	1	27.777	27.277	28.277	0								0	0	0	0.34212	1	3645	3645		0	0	1				26216	7183	17465	17630	35149	35149					0.04458861583361795
YVGVEALKNF	10	Unmodified	_YVGVEALKNF_					0	0	0			REV__ENST00000487944.5_1_1:26759436-26764820:+|nuORF	REV__ENST00000487944.5_1_1:26759436-26764820:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.322021484375	2	570.308406	1138.60226	0.20393	0.0001163	0.016638	9.4886E-06	0.22057	0.00012579	570.3084877792273	60.6	0.86668	60.674	60.493	61.36	0.073421					48	29	3	0	0	0	0.34138	1	13439	13439		18.146	1.0335	1	291980	+		26217	12131	17466	17631	35150	35150					0.038502986487856106
YVGVEALKNF	10	Unmodified	_YVGVEALKNF_					0	0	0			REV__ENST00000487944.5_1_1:26759436-26764820:+|nuORF	REV__ENST00000487944.5_1_1:26759436-26764820:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	570.308406	1138.60226	0.38822	0.00022141	-0.053303	-3.0399E-05	0.33492	0.00019101	570.3082543223677	60.681	0.91082	60.681	60.507	61.418	0	0.0035018	-5.3379E-05	NaN	18.146	44	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270430	+		26218	12131	17466	17631							0.038502986487856106
YVGVEALKNF	10	Unmodified	_YVGVEALKNF_					0	0	0			REV__ENST00000487944.5_1_1:26759436-26764820:+|nuORF	REV__ENST00000487944.5_1_1:26759436-26764820:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	570.308406	1138.60226	0.20393	0.0001163	0.016638	9.4886E-06	0.22057	0.00012579	570.3084877792273	60.6	0.86668	60.674	60.493	61.36	0.073421	-0.0035018	2.6397E-05	NaN	18.146	48	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291980	+		26219	12131	17466	17631							0.038502986487856106
YVGYGISKIF	10	Unmodified	_YVGYGISKIF_					0	0	0		tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2794189453125	2	573.813325	1145.6121	0.22988	0.00013191	-0.34247	-0.00019652	-0.11259	-6.4608E-05	574.31490981466	91.437	0.22883	91.472	91.384	91.612	0.035446					11	7	2	0	0	0	0.31585	1	22811	22811		10.824	2.9138	1	36210			26220	13476	17467	17632	35151	35151					0.04511486654178043
YVHDISGQAT	10	Unmodified	_YVHDISGQAT_					0	0	0			REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7619018554688	2	545.76182	1089.50909	0.19518	0.00010652	-0.28445	-0.00015524	-0.089267	-4.8718E-05	545.7615801873335	39.01	0.96766	39.01	38.514	39.482	0					74	36	3	0	0	0	0.42335	1	7040	7040		9.3831	1.7742	1	108280	+		26221	11111	17468	17633	35152	35152					-0.03208625804450094
YVHILKPE	8	Unmodified	_YVHILKPE_					0	0	0		KCNT2|p.Q418H|1|0.12|ENSG00000162687|chr1:196398603-196398603|C/G|missense_variant	KCNT2|p.Q418H|1|0.12|ENSG00000162687|chr1:196398603-196398603|C/G|missense_variant	KCNT2|p.Q418H|1|0.12|ENSG00000162687|chr1:196398603-196398603|C/G|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	499.78704833984375	2	499.78711	997.559667	0.2989	0.00014939	-0.33178	-0.00016582	-0.032885	-1.6436E-05	499.786604257283	52.188	0.32436	52.255	52.142	52.466	0.067173					20	13	2	0	0	0	0.52502	1	10848	10848		9.3474	0.75416	1	66470			26222	7369	17469	17634	35153	35153					0.06078948311221666
YVHKQFPM	8	Unmodified	_YVHKQFPM_					0	0	0			REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2662353515625	2	525.265487	1048.51642	-0.21152	-0.00011111	2.0303	0.0010664	1.8188	0.00095533	525.2664362666101	30.042	0.23939	30.117	29.972	30.211	0.075403					22	14	2	0	0	0	0.53345	1	4182	4182		5.7604	0.52976	1	20437	+		26223	9190	17470	17635	35154	35154					-0.005895647376974011
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(99)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2472534179688	2	525.247295	1048.48004	0.039185	2.0582E-05	-0.1881	-9.8801E-05	-0.14892	-7.8219E-05	525.247127467422	34.833	0.9412	34.833	34.676	35.617	0					91	34	4	0	0	0	0.038018	2	5747	5747;5792		98.807	55.839	1	246810			26224	2979	17471	17636	35155;35156	35155		190			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(86)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.2472534179688	2	525.247295	1048.48004	0.22096	0.00011606	-0.056496	-2.9675E-05	0.16446	8.6384E-05	525.2471423709331	37.058	3.3863	37.058	35.617	39.004	0					257	126	3	0	0	0	0.018027	4	6375	6375;6419;6434;6514		98.807	55.839	1	219580			26225	2979	17471	17636	35157;35158;35159;35160	35157		190			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(99)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2471923828125	2	525.247295	1048.48004	-0.015697	-8.2446E-06	-0.0054463	-2.8607E-06	-0.021143	-1.1105E-05	525.2472314163077	34.787	0.87846	34.864	34.688	35.567	0.076244					75	36	4	0	0	0	0.038018	2	5596	5596;5648		98.807	55.839	1	262480			26226	2979	17471	17636	35161;35162	35161		190			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(74)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2473754882812	2	525.247295	1048.48004	0.15035	7.8969E-05	0.096704	5.0794E-05	0.24705	0.00012976	525.2472048303515	36.959	2.7807	37.04	36.049	38.83	0.081711					254	105	5	0	0	0	0.02462	3	6277	6228;6277;6327		98.807	55.839	1	235720			26227	2979	17471	17636	35163;35164;35165	35164		190			-0.04226441634409639
YVHRQVRP	8	Unmodified	_YVHRQVRP_					0	0	0		ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7846069335938	2	527.798875	1053.5832	0.5953	0.0003142	0.18923	9.9874E-05	0.78452	0.00041407	527.7988792281928	92.819	0.49313	92.819	92.634	93.128	0					43	18	3	0	0	0	0.52502	1	23338	23338		9.3474	9.3474	1	386460			26228	3694	17472	17637	35166	35166					0.05854806868410378
YVHSLEDL	8	Unmodified	_YVHSLEDL_					0	0	0		ENSG00000167654|ENST00000450849|ATCAY;nc|ENSG00000167654|Q86WG3-3|ATCAY	ENSG00000167654|ENST00000450849|ATCAY	ENSG00000167654|ENST00000450849|ATCAY	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.24072265625	2	488.242732	974.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.643	1	39.732	39.232	40.232	0.088562								0	0	0	0.38822	1	7059	7059		2.3027	0	1				26229	4221	17473	17638	35167	35167					-0.017345117191098325
YVHVPPSAAL	10	Unmodified	_YVHVPPSAAL_					0	0	0			REV__ENST00000394818.7_1_11:61919466-61919706:+|nuORF	REV__ENST00000394818.7_1_11:61919466-61919706:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	527.2905883789062	2	527.290017	1052.56548	0.30108	0.00015876	0.11658	6.1469E-05	0.41766	0.00022023	527.2900813491788	74.297	0.73695	74.297	74.03	74.767	0					63	27	3	0	0	0	0.41688	1	17817	17817		10.074	1.9184	1	671680	+		26230	11715	17474	17639	35168	35168					0.04130046822888289
YVHVTEFF	8	Unmodified	_YVHVTEFF_					0	0	0			REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2	REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	521.253662109375	2	521.255643	1040.49673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.54	1	46.54	46.04	47.04	0								0	0	0	0.38796	1	9270	9270		14.582	0	1		+		26231	10915	17475	17640	35169	35169					-0.021896174768244236
YVIPQPHF	8	Unmodified	_YVIPQPHF_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.7662658691406	2	500.766178	999.517802	0.42396	0.0002123	0.32798	0.00016424	0.75194	0.00037654	500.76612436171865	85.742	0.4824	85.742	85.503	85.985	0					36	20	2	0	0	0	0.4286	1	21244	21244		22.453	6.6844	1	198550			26232	2870	17476	17641	35170	35170					0.018023926226987896
YVISNEPVDK	10	Unmodified	_YVISNEPVDK_					0	0	0			REV__tr|U7SMC5|U7SMC5_FUSNUUDP-3-O-[3-hydroxymyristoyl]glucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01954PE=4SV=1	REV__tr|U7SMC5|U7SMC5_FUSNUUDP-3-O-[3-hydroxymyristoyl]glucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01954PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.7681274414062	2	582.300778	1162.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.283	1	88.313	87.813	88.813	0.030037								0	0	0	0.33092	1	21820	21820		10.824	1.4765	1		+		26233	13087	17477	17642	35171	35171					0.012213870609457445
YVITSVSWW	9	Unmodified	_YVITSVSWW_					0	0	0		EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant	EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant	EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.8074340820312	2	570.78985	1139.56515	0.7859	0.00044859	-0.27438	-0.00015661	0.51152	0.00029197	570.7897906971621	80.7	0.83135	80.7	80.313	81.145	0					75	28	4	0	0	0	0.19241	3	19744	19700;19744;19796		19.439	4.1248	1	511390			26234	314	17478	17643	35172;35173;35174	35173					0.0009462710304433131
YVITSVSWW	9	Unmodified	_YVITSVSWW_					0	0	0		EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant	EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant	EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	570.8074340820312	2	570.78985	1139.56515	0.63836	0.00036437	0.13224	7.5479E-05	0.7706	0.00043985	570.7899225428444	80.659	0.72903	80.683	80.407	81.136	0.023605					67	25	4	0	0	0	0.19241	1	19600	19600		19.439	0.18201	1	522820			26235	314	17478	17643	35175	35175					0.0009462710304433131
YVIVVNDKIA	10	Unmodified	_YVIVVNDKIA_					0	0	0			REV__ENSG00000185009|ENST00000355264|AP3M1	REV__ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3193969726562	2	567.331882	1132.64921	0.37021	0.00021003	-0.39616	-0.00022476	-0.025951	-1.4723E-05	567.3315743727476	47.277	0.31662	47.361	47.244	47.56	0.083096					13	11	2	0	0	0	0.43343	1	9398	9398		7.9102	1.187	1	26583	+		26236	10653	17479	17644	35176	35176					0.0881915819995811
YVKIVKEV	8	Unmodified	_YVKIVKEV_					0	0	0			REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF	REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	488.83575439453125	2	489.305136	976.595718	0.090697	4.4378E-05	0.13511	6.6109E-05	0.2258	0.00011049	489.30531573431307	59.544	0.29237	59.616	59.402	59.695	0.072338					12	10	2	0	0	0	0.3576	1	13021	13021		4.756	0	1	58823	+		26237	8463	17480	17645	35177	35177					0.10648405488097978
YVKKGPGGL	9	Unmodified	_YVKKGPGGL_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	459.7506408691406	2	459.774003	917.533452	-0.18792	-8.6401E-05	0.4526	0.00020809	0.26468	0.00012169	459.774247373017	32.431	0.17793	32.505	32.408	32.586	0.07378					15	10	2	0	0	0	0.26021	1	4874	4874		0	0	1	9382.9	+		26238	11936	17481	17646	35178	35178					0.07138679139768556
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3624877929688	2	643.36117	1284.70779	-0.10561	-6.7945E-05	0.29094	0.00018718	0.18533	0.00011924	643.3624646755422	108.15	0.3968	108.15	108.06	108.46	0					153	54	4	0	0	0	0.40578	2	27888	27888;27921		2.9952	0	1	9528500	+		26239	9911	17482	17647	35179;35180	35179					0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3619995117188	2	643.36117	1284.70779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.42	1	108.42	107.92	108.92	0								0	0	0	0.33362	1	27962	27962		2.9952	0	1		+		26240	9911	17482	17647	35181	35181					0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	643.3619995117188	2	643.36117	1284.70779	-0.10561	-6.7945E-05	0.29094	0.00018718	0.18533	0.00011924	643.3624646755422	108.15	0.3968	108.15	108.06	108.46	0					153	54	4	0	0	0	0.3108	1	27962	27962		2.9952	0	1	9528500	+		26241	9911	17482	17647	35182	35182					0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3628540039062	2	643.36117	1284.70779	0.18196	0.00011707	0.069423	4.4664E-05	0.25138	0.00016173	643.3610450571107	107.96	0.18329	107.99	107.91	108.09	0.022224					45	26	2	0	0	0	0.40578	1	27633	27633		2.9952	0	1	14397000	+		26242	9911	17482	17647	35183	35183					0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3616943359375	2	643.36117	1284.70779	0.18193	0.00011704	0.71502	0.00046001	0.89694	0.00057706	643.3612819060489	108.11	0.26803	108.14	108.07	108.34	0.022232					58	38	2	0	0	0	0.40578	1	27712	27712		2.9952	0	1	6839800	+		26243	9911	17482	17647	35184	35184					0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3628540039062	2	643.36117	1284.70779	0.18092	0.0001164	0.51984	0.00033445	0.70076	0.00045084	643.3612324525967	108.79	0.14047	108.81	108.76	108.9	0.019402					48	19	3	0	0	0	0.40578	1	27822	27822		2.9952	0	1	4452900	+		26244	9911	17482	17647	35185	35185					0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	643.3628540039062	2	643.36117	1284.70779	0.18203	0.00011711	0.58088	0.00037371	0.76291	0.00049083	643.3608405920645	107.84	0.1787	107.87	107.76	107.94	0.022224					39	25	2	0	0	0	0.3108	1	27633	27633		2.9952	0	1	16783000	+		26245	9911	17482	17647	35186	35186					0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	643.36117	1284.70779	-0.10609	-6.8254E-05	1.9735	0.0012697	1.8674	0.0012014	643.362825526505	108.78	0.38106	108.78	108.68	109.06	0	-0.015281	0.00057642	NaN	2.9952	111	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2357800	+		26246	9911	17482	17647							0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	643.36117	1284.70779	0.18193	0.00011704	0.71502	0.00046001	0.89694	0.00057706	643.3612819060489	108.11	0.26803	108.14	108.07	108.34	0.022232	-0.0050716	0.00011539	NaN	2.9952	58	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6839800	+		26247	9911	17482	17647							0.07682214774422391
YVKKVTSTVFN	11	Unmodified	_YVKKVTSTVFN_					0	0	0			REV__ENSG00000162843|ENST00000437684|WDR64	REV__ENSG00000162843|ENST00000437684|WDR64	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	643.36117	1284.70779	0.18092	0.0001164	0.51984	0.00033445	0.70076	0.00045084	643.3612324525967	108.79	0.14047	108.81	108.76	108.9	0.019402	0.015281	-0.001294	NaN	2.9952	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4452900	+		26248	9911	17482	17647							0.07682214774422391
YVKLVDTKQRF	11	Unmodified	_YVKLVDTKQRF_					0	0	0			REV__nc|ENSG00000110218|Q96RD7-2|PANX1	REV__nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	465.9346008300781	3	466.269755	1395.78744	0.35748	0.00016668	-3.6103	-0.0016834	-3.2528	-0.0015167	466.2677706715386	67.834	0.16583	67.834	67.748	67.914	0					9	6	2	0	0	0	0.31096	1	15725	15725		1.4551	0.12547	1	82636	+		26249	8663	17483	17648	35187	35187					0.10537281448387148
YVKQFVYN	8	Unmodified	_YVKQFVYN_					0	0	0			REV__ENST00000605941.5_1_2:190528642-190530834:+|nuORF	REV__ENST00000605941.5_1_2:190528642-190530834:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.8186645507812	2	530.776742	1059.53893	0.66786	0.00035449	-0.59635	-0.00031653	0.071515	3.7958E-05	530.7763551710999	66.203	0.2646	66.27	66.189	66.453	0.066872					13	9	2	0	0	0	0.35759	1	15155	15155		13.508	2.3934	1	82188	+		26250	12639	17484	17649	35188	35188					0.011543579315684838
YVLAFKEKILF	11	Unmodified	_YVLAFKEKILF_					0	0	0		ENST00000552861.5_1_12:95452024-95452138:-|nuORF	ENST00000552861.5_1_12:95452024-95452138:-|nuORF	ENST00000552861.5_1_12:95452024-95452138:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	457.60784912109375	3	457.607596	1369.80096	0.67482	0.0003088	0.83572	0.00038243	1.5105	0.00069123	457.60781129591237	92.505	1.5347	92.505	91.927	93.462	0					141	58	3	0	0	0	0.4167	1	23151	23151		0.50596	0	1	222480			26251	7110	17485	17650	35189	35189					0.13085139227655418
YVLAWLLL	8	Unmodified	_YVLAWLLL_					0	0	0		ENST00000448810.5_1_5:131726469-131729504:+|nuORF;nc|ENSG00000197375|O76082-2|SLC22A5;ENST00000475308.1_1_5:131726319-131729961:+|nuORF;ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	496.30584716796875	2	495.804771	989.59499	0.25683	0.00012734	-0.17363	-8.6087E-05	0.083196	4.1249E-05	495.80465938990335	104.59	0.47234	104.59	104.41	104.88	0					68	45	2	0	0	0	0.53771	1	26891	26891		2.8892	0	1	121860			26252	5292	17486	17651	35190	35190					0.09977610839052886
YVLCICILYV	10	Unmodified	_YVLCICILYV_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.3036499023438	2	601.321614	1200.62867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.433	1	86.458	85.958	86.958	0.025169								0	0	0	0.33341	1	21262	21262		7.9102	0	1				26253	6381	17487	17652	35191	35191					0.036385282242690664
YVLDDAVFVL	10	Unmodified	_YVLDDAVFVL_					0	0	0		ENST00000564733.1_1_16:21666528-21666750:+|nuORF;nc|ENSG00000197006|Q9H1A3-2|METTL9;ENSG00000197006|ENST00000358154|METTL9	ENST00000564733.1_1_16:21666528-21666750:+|nuORF	ENST00000564733.1_1_16:21666528-21666750:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7655639648438	2	577.310615	1152.60668	0.34354	0.00019833	0.55047	0.00031779	0.89402	0.00051613	577.3108512909348	94.621	0.38714	94.659	94.5	94.887	0.038086					25	15	2	0	0	0	0.28878	1	23735	23735		25.399	9.5521	1	116760			26254	5264	17488	17653	35192	35192					0.036477630716944986
YVLDSWCHLI	10	Unmodified	_YVLDSWCHLI_					0	0	0			REV__ENST00000549479.1_1_12:76462365-76462575:-|nuORF	REV__ENST00000549479.1_1_12:76462365-76462575:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.8088989257812	2	624.807716	1247.60088	0.2185	0.00013652	0.28481	0.00017795	0.50331	0.00031447	625.3091243538461	63.316	0.43118	63.316	63.073	63.504	0					25	15	2	0	0	0	0.43972	1	14412	14412		6.7232	0	1	161630	+		26255	12428	17489	17654	35193	35193					-0.013016587115998846
YVLEQQRI	8	Unmodified	_YVLEQQRI_					0	0	0		ENSG00000162825|ENST00000698833|NBPF20;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000162825|P0DPF2|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7933959960938	2	524.792924	1047.57129	0.019203	1.0078E-05	0.060841	3.1929E-05	0.080044	4.2006E-05	524.7929106614226	34.585	1.3876	34.585	34.317	35.705	0					136	51	5	0	0	0	0.53423	2	5610	5610;5882		5.2307	0	1	1151400			26256	3862	17490	17655	35194;35195	35194					0.049411453345555856
YVLFCRELSG	10	Unmodified	_YVLFCRELSG_					0	0	0			REV__ENST00000592208.5_1_19:10433104-10439782:-|nuORF	REV__ENST00000592208.5_1_19:10433104-10439782:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2894897460938	2	593.799891	1185.58523	0.53893	0.00032002	-2.0229	-0.0012012	-1.484	-0.0008812	593.797717226175	64.64	1.0896	64.64	64.382	65.472	0					105	39	4	0	0	0	0.38912	1	14816	14816		13.042	0	1	385490	+		26257	9870	17491	17656	35196	35196					-0.0001394522864757164
YVLFIFPC	8	Unmodified	_YVLFIFPC_					0	0	0			REV__nc|ENSG00000176748|P0C646|OR52Z1P	REV__nc|ENSG00000176748|P0C646|OR52Z1P	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	500.72967529296875	2	501.261882	1000.50921	-0.1734	-8.6921E-05	-0.081364	-4.0784E-05	-0.25477	-0.00012771	501.26170672695946	26.719	0.25167	26.719	26.606	26.857	0					27	16	2	0	0	0	0.3576	1	3318	3318		0	0	1	11889	+		26258	12848	17492	17657	35197	35197					0.008977026618595119
YVLFLRHH	8	Unmodified	_YVLFLRHH_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.8070068359375	2	542.806168	1083.59778	0.53335	0.00028951	0.47436	0.00025748	1.0077	0.00054699	542.8062628453414	99.048	0.5242	99.048	98.909	99.433	0					63	36	2	0	0	0	0.48651	1	25232	25232		14.582	0	1	151950			26259	3059	17493	17658	35198	35198					0.05932879016563675
YVLFLRHH	8	Unmodified	_YVLFLRHH_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.8058471679688	2	542.806168	1083.59778	0.60064	0.00032603	0.32371	0.00017571	0.92435	0.00050174	542.8062079042156	98.921	0.88829	98.963	98.68	99.569	0.041931					69	58	2	0	0	0	0.48651	3	25013	25013;25061;25158		14.582	0	1	239160			26260	3059	17493	17658	35199;35200;35201	35199					0.05932879016563675
YVLGPHTEF	9	Unmodified	_YVLGPHTEF_					0	0	0			REV__tr|U7SQ46|U7SQ46_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01689PE=4SV=1	REV__tr|U7SQ46|U7SQ46_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01689PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.2820434570312	2	531.766374	1061.5182	0.36129	0.00019212	-4.055	-0.0021563	-3.6937	-0.0019642	531.762743229317	62.016	0.2288	62.016	61.974	62.203	0					11	8	2	0	0	0	0.28587	1	13978	13978		8.5933	0.68312	1	59947	+		26261	13123	17494	17659	35202	35202					-0.010102324480840252
YVLGVYSSYL	10	Unmodified	_YVLGVYSSYL_					0	0	0			REV__ENST00000584246.1_1_17:72773463-72781743:+|nuORF	REV__ENST00000584246.1_1_17:72773463-72781743:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.3028564453125	2	582.30279	1162.59103	0.38347	0.00022329	-1.2848	-0.00074814	-0.90132	-0.00052484	582.3021375573213	89.209	0.46285	89.209	88.982	89.445	0					41	18	3	0	0	0	0.25965	1	22230	22230		26.884	4.1474	1	218560	+		26262	8630	17495	17660	35203	35203					0.01623476554664194
YVLGYKQTL	9	Unmodified	_YVLGYKQTL_					0	0	0		ENST00000429309.1_1_3:32676926-32677028:-|nuORF;ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENSG00000156482|ENST00000287038|RPL30	ENST00000429309.1_1_3:32676926-32677028:-|nuORF	ENST00000429309.1_1_3:32676926-32677028:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.806396484375	2	542.8055	1083.59645	0.55321	0.00030029	1.4484	0.00078622	2.0016	0.0010865	542.8062725619702	98.851	0.20456	98.851	98.736	98.941	0					18	11	2	0	0	0	0.22344	1	25189	25189		15.847	1.2655	1	136450			26263	3626	17496	17661	35204	35204					0.05799200137153093
YVLHFSSSHL	10	Unmodified	_YVLHFSSSHL_					0	0	0		ENST00000503074.1_1_5:35659153-35697983:+|nuORF	ENST00000503074.1_1_5:35659153-35697983:+|nuORF	ENST00000503074.1_1_5:35659153-35697983:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3223266601562	2	595.303655	1188.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.364	1	69.426	68.926	69.926	0.062126								0	0	0	0.33092	1	16060	16060		10.824	1.4765	1				26264	6871	17497	17662	35205	35205					0.006005303632946379
YVLICPVFFL	10	Unmodified	_YVLICPVFFL_					0	0	0			REV__ENSG00000176540|ENST00000319813|OR4C5	REV__ENSG00000176540|ENST00000319813|OR4C5	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.7549438476562	2	607.338121	1212.66169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.796	1	78.826	78.326	79.326	0.030159								0	0	0	0.33341	1	18936	18936		7.9102	0	1		+		26265	10407	17498	17663	35206	35206					0.063864783386407
YVLKDHSRC	9	Unmodified	_YVLKDHSRC_					0	0	0		nc|ENSG00000283706|Q9UI38|PRSS50	nc|ENSG00000283706|Q9UI38|PRSS50	nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.8294067382812	2	560.782033	1119.54951	0.86867	0.00048713	-3.1636	-0.0017741	-2.2949	-0.001287	560.7803860316259	81.274	0.31831	81.274	81.056	81.374	0					16	10	2	0	0	0	0.23975	1	19851	19851		14.838	3.198	1	96376			26266	7631	17499	17664	35207	35207					-0.00547982685657189
YVLKGGGM	8	Unmodified	_YVLKGGGM_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	412.7206115722656	2	412.720381	823.42621	0.6663	0.00027499	0.38304	0.00015809	1.0493	0.00043308	412.7203932983489	91.822	1.3688	91.822	91.559	92.928	0					124	51	4	0	0	0	0.48651	2	23029	23029;23079		14.582	0	1	2150600			26267	3951	17500	17665	35208;35209	35208					0.0074338593387892615
YVLKGGGM	8	Unmodified	_YVLKGGGM_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	412.7206115722656	2	412.720381	823.42621	0.16058	6.6275E-05	0.84862	0.00035024	1.0092	0.00041652	412.7205715233462	91.762	1.6175	91.798	91.499	93.117	0.036522					130	58	4	0	0	0	0.48651	2	22863	22863;22913		14.582	0	1	1823400			26268	3951	17500	17665	35210;35211	35210					0.0074338593387892615
YVLKLLKL	8	Unmodified	_YVLKLLKL_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	495.8312683105469	2	495.341521	988.668489	0.3902	0.00019328	-1.306	-0.00064689	-0.91575	-0.00045361	495.34100496952516	112.46	0.19228	112.48	112.33	112.52	0.014595					29	22	2	0	0	0	0.54199	1	28683	28683		0	0	1	370610			26269	2400	17501	17666	35212	35212					0.17370159281495035
YVLKLMKK	8	Unmodified	_YVLKLMKK_					0	0	0			REV__ENSG00000172489|ENST00000313033|OR5T3	REV__ENSG00000172489|ENST00000313033|OR5T3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	512.271240234375	2	511.825181	1021.63581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.859	1	17.859	17.359	18.359	0								0	0	0	0.38822	1	1005	1005		0	0	1		+		26270	10290	17502	17667	35213	35213					0.12585628886995437
YVLPDGVLF	9	Unmodified	_YVLPDGVLF_					0	0	0			REV__tr|U7SSL9|U7SSL9_FUSNUDUF4241domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01311PE=4SV=1	REV__tr|U7SSL9|U7SSL9_FUSNUDUF4241domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01311PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	511.7812194824219	2	511.781493	1021.54843	0.66453	0.0003401	-0.41881	-0.00021434	0.24572	0.00012575	511.7811943886768	85.215	1.0667	85.239	84.83	85.897	0.023125					79	42	3	0	0	0	0.29105	1	21014	21014		7.9102	0	1	320710	+		26271	13154	17503	17668	35214	35214					0.038521262170888804
YVLPDQQKV	9	Unmodified	_YVLPDQQKV_					0	0	0			REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	545.300537109375	2	545.300581	1088.58661	-0.10435	-5.69E-05	0.4177	0.00022777	0.31335	0.00017087	545.300750714052	28.612	0.41206	28.694	28.512	28.924	0.082134					50	24	3	0	0	0	0.24767	1	3747	3747		13.042	0.16986	1	40795	+		26272	9056	17504	17669	35215	35215					0.0458601213174461
YVLRLEPLL	9	Unmodified	_YVLRLEPLL_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.3449096679688	2	558.344792	1114.67503	0.43017	0.00024018	0.23567	0.00013159	0.66584	0.00037177	558.3447649461789	74.26	0.93712	74.26	74.074	75.011	0					82	34	4	0	0	0	0.0081278	2	17716	17716;17766		72.968	0	1	959420			26273	4117	17505	17670	35216;35217	35216					0.1222805244221945
YVLRLEPLL	9	Unmodified	_YVLRLEPLL_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	558.3449096679688	2	558.344792	1114.67503	0.61332	0.00034244	-0.015782	-8.8121E-06	0.59754	0.00033363	558.3445833466985	74.22	0.90012	74.269	74.071	74.971	0.048538					80	32	4	0	0	0	0.012041	2	17545	17545;17593		63.961	0	1	839200			26274	4117	17505	17670	35218;35219	35218					0.1222805244221945
YVLRRGDVR	9	Unmodified	_YVLRRGDVR_					0	0	0			REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF	REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3193359375	2	567.330539	1132.64652	0.38194	0.00021668	2.0745	0.0011769	2.4564	0.0013936	567.3319741519681	47.332	0.26795	47.332	47.231	47.499	0					14	8	3	0	0	0	0.31136	1	9548	9548		5.2307	0	1	36886	+		26275	9203	17506	17671	35220	35220					0.08550747585650242
YVLRRGDVR	9	Unmodified	_YVLRRGDVR_					0	0	0			REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF	REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	567.330539	1132.64652	0.38194	0.00021668	2.0745	0.0011769	2.4564	0.0013936	567.3319741519681	47.332	0.26795	47.332	47.231	47.499	0	-0.014446	5.4095E-05	NaN	5.2307	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36886	+		26276	9203	17506	17671							0.08550747585650242
YVLRRGDVR	9	Unmodified	_YVLRRGDVR_					0	0	0			REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF	REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	567.330539	1132.64652	0.37021	0.00021003	1.9705	0.0011179	2.3407	0.0013279	567.3315743727476	47.277	0.31662	47.361	47.244	47.56	0.083096	0.014446	-6.3882E-05	NaN	5.2307	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26583	+		26277	9203	17506	17671							0.08550747585650242
YVLTIMNMV	9	Unmodified	_YVLTIMNMV_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000565793.5_1_15:79069566-79092863:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.2845458984375	2	542.282489	1082.55042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.673	1	45.758	45.258	46.258	0.085617								0	0	0	0.2428	1	8877	8877		10.824	1.4765	1				26278	2790	17507	17672	35221	35221					0.012450956390239298
YVLVDLLF	8	Unmodified	_YVLVDLLF_					0	0	0			REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|69	REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|69	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	491.2862548828125	2	491.286411	980.55827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.23	1	101.23	100.73	101.73	0								0	0	0	0.38822	1	25921	25921		13.508	0	1		+		26279	7772	17508	17673	35222	35222					0.06721314222465935
YVLVDLLF	8	Unmodified	_YVLVDLLF_					0	0	0			REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|69	REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|69	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	491.2862854003906	2	491.286411	980.55827	0.43272	0.00021259	-0.64776	-0.00031823	-0.21504	-0.00010565	491.28593869483853	101.2	0.31371	101.24	101.09	101.4	0.042656					26	16	2	0	0	0	0.49441	1	25767	25767		13.508	0	1	45584	+		26280	7772	17508	17673	35223	35223					0.06721314222465935
YVMFSFQTF	9	Unmodified	_YVMFSFQTF_					0	0	0			REV__ENSG00000038002|ENST00000264595|AGA	REV__ENSG00000038002|ENST00000264595|AGA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	584.7947998046875	2	585.270435	1168.52632	0.78231	0.00045787	-2.8767	-0.0016836	-2.0944	-0.0012258	585.2686769308034	63.547	0.32045	63.618	63.477	63.797	0.071014					16	10	2	0	0	0	0.25051	1	14297	14297		7.9102	0.62092	1	116690	+		26281	8019	17509	17674	35224	35224					-0.05120421522997276
YVMMIYFDM	9	Unmodified	_YVMMIYFDM_					0	0	0		nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.26171875	2	606.760532	1211.50651	0.82556	0.00050092	0.13281	8.0584E-05	0.95837	0.0005815	606.7605736929264	102.37	0.29723	102.42	102.33	102.63	0.040916					32	18	2	0	0	0	0.34646	1	26156	26156		0.6015	0	1	91591			26282	37	17510	17675	35225	35225					-0.09078256849625177
YVMMIYFDM	9	Unmodified	_YVMMIYFDM_					0	0	0		nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	606.760532	1211.50651	0.57285	0.00034758	0.18089	0.00010976	0.75373	0.00045734	606.7604701178234	102.44	0.33614	102.44	102.36	102.69	0	0.013059	3.833E-05	NaN	0.6015	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139410			26283	37	17510	17675							-0.09078256849625177
YVMMIYFDM	9	Unmodified	_YVMMIYFDM_					0	0	0		nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	nc|ENSG00000160746|Q9NW15-4|ANO10	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	606.760532	1211.50651	0.82556	0.00050092	0.13281	8.0584E-05	0.95837	0.0005815	606.7605736929264	102.37	0.29723	102.42	102.33	102.63	0.040916	-0.013059	-2.0012E-05	NaN	0.6015	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91591			26284	37	17510	17675							-0.09078256849625177
YVMPILGLI	9	Unmodified	_YVMPILGLI_					0	0	0		ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	509.8035583496094	2	509.803914	1017.59328	0.6029	0.00030736	-0.59728	-0.00030449	0.0056207	2.8654E-06	509.80361026517267	83.873	0.6352	83.873	83.519	84.154	0					37	21	2	0	0	0	0.33356	1	20707	20707		2.3027	0	1	183850			26285	5089	17511	17676	35226	35226					0.08518233758786664
YVMPVFVLF	9	Unmodified	_YVMPVFVLF_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|79	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|79	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|79	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.804931640625	2	557.803914	1113.59328	-0.17322	-9.662E-05	0.17372	9.6899E-05	0.0004995	2.7862E-07	557.8040516503951	20.855	0.40679	20.855	20.72	21.127	0					91	43	3	0	0	0	0.34646	1	1687	1687		0.6015	0	1	73953			26286	179	17512	17677	35227	35227					0.04102233758771945
YVMPVFVLF	9	Unmodified	_YVMPVFVLF_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|79	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|79	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|79	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.8041381835938	2	557.803914	1113.59328	0.29805	0.00016625	-0.22946	-0.00012799	0.068585	3.8257E-05	557.8037899737564	20.71	0.31897	20.81	20.682	21.001	0.099499					86	34	3	0	0	0	0.33356	1	1549	1549		2.3027	0	1	84060			26287	179	17512	17677	35228	35228					0.04102233758771945
YVMRTTTTI	9	Unmodified	_YVMRTTTTI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	543.2852172851562	2	543.286617	1084.55868	0.1229	6.6772E-05	-1.2863	-0.00069881	-1.1634	-0.00063204	543.2860345445525	45.778	0.72549	45.863	45.549	46.275	0.085617					39	27	3	0	0	0	0.14444	1	8925	8925		24.991	1.2012	1	119740	+		26288	9642	17513	17678	35229	35229					0.019783658800179182
YVMVRERESF	10	Unmodified	_YVMVRERESF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	439.5335998535156	3	439.220295	1314.63906	0.51953	0.00022819	0.018452	8.1043E-06	0.53798	0.00023629	439.2202420527231	62.408	0.29223	62.408	62.255	62.547	0					17	10	2	0	0	0	0.31754	1	14091	14091		6.1918	0.40842	1	151920			26289	554	17514	17679	35230	35230					-0.005677727969441548
YVNCQDLIF	9	Unmodified	_YVNCQDLIF_					0	0	0			REV__ENSG00000214753|ENST00000301785|HNRNPUL2	REV__ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.7782592773438	2	557.765517	1113.51648	0.43123	0.00024053	0.3266	0.00018217	0.75783	0.00042269	558.2672802772003	87.51	0.15407	87.54	87.427	87.582	0.029213					7	5	2	0	0	0	0.24749	1	21600	21600		9.3474	0	1	44313	+		26290	11009	17515	17680	35231	35231					-0.0357360952837098
YVNFMNYYI	9	Unmodified	_YVNFMNYYI_					0	0	0		ENST00000519225.5_3_1:242012233-242012323:+|nuORF	ENST00000519225.5_3_1:242012233-242012323:+|nuORF	ENST00000519225.5_3_1:242012233-242012323:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.7792358398438	2	613.781167	1225.54778	-0.22177	-0.00013612	-3.1595	-0.0019393	-3.3813	-0.0020754	613.7792460753412	44.03	0.75662	44.119	43.901	44.658	0.088924					37	25	2	0	0	0	0.33704	1	8358	8358		1.8442	0	1	71179			26291	6944	17516	17681	35232	35232					-0.05597036494259555
YVNGQVDGVAL	11	Unmodified	_YVNGQVDGVAL_					0	0	0			REV__nc|ENSG00000129566|Q99973-2|TEP1	REV__nc|ENSG00000129566|Q99973-2|TEP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3193969726562	2	567.793121	1133.57169	0.43048	0.00024443	0.6633	0.00037661	1.0938	0.00062104	567.7934456127047	47.492	0.32441	47.575	47.405	47.729	0.083096					19	13	2	0	0	0	0.30965	1	9398	9398		12.241	5.5175	1	89146	+		26292	9038	17517	17682	35233	35233					0.010245202637634065
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;ENST00000573023.6_1_16:67984709-67996179:-|nuORF	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7922973632812	2	544.792392	1087.57023	0.21716	0.00011831	0.51178	0.00027881	0.72893	0.00039712	544.7924133824886	58.546	0.52287	58.616	58.446	58.969	0.070477					35	17	3	0	0	0	0.045114	1	12789	12789		44.407	2.3125	1	290100			26293	3000;2234	17518	17683	35234	35234					0.029949309656331025
YVNKYVHA	8	Unmodified	_YVNKYVHA_					0	0	0		ENST00000312184.5_1_8:74894017-74894116:+|nuORF	ENST00000312184.5_1_8:74894017-74894116:+|nuORF	ENST00000312184.5_1_8:74894017-74894116:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.2591552734375	2	497.261259	992.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.619	1	26.619	26.119	27.119	0								0	0	0	0.38822	1	3311	3311		5.7604	1.816	1				26294	6007	17519	17684	35235	35235					0.01141204617317726
YVNLFYVF	8	Unmodified	_YVNLFYVF_					0	0	0			REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	532.7864990234375	2	532.776211	1063.53787	0.34029	0.0001813	-2.987	-0.0015914	-2.6467	-0.0014101	532.7746331812519	90.674	0.33878	90.674	90.495	90.834	0					25	12	3	0	0	0	0.48651	2	22694	22694;22728		14.582	2.0501	1	113700	+		26295	11532	17520	17685	35236;35237	35236					0.008641435626486782
YVNLFYVF	8	Unmodified	_YVNLFYVF_					0	0	0			REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	532.774658203125	2	532.776211	1063.53787	0.16301	8.6846E-05	-3.2267	-0.0017191	-3.0637	-0.0016323	532.7746121791107	90.657	0.3503	90.692	90.478	90.828	0.035187					26	14	3	0	0	0	0.48651	1	22558	22558		14.582	2.0501	1	118310	+		26296	11532	17520	17685	35238	35238					0.008641435626486782
YVNLFYVF	8	Unmodified	_YVNLFYVF_					0	0	0			REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	532.776211	1063.53787	0.34029	0.0001813	-2.987	-0.0015914	-2.6467	-0.0014101	532.7746331812519	90.674	0.33878	90.674	90.495	90.834	0	-0.008973	0.00013232	NaN	14.582	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113700	+		26297	11532	17520	17685							0.008641435626486782
YVNQLFSPRA	10	Unmodified	_YVNQLFSPRA_					0	0	0			REV__ENST00000451270.6_1_15:60678230-60690176:-|nuORF	REV__ENST00000451270.6_1_15:60678230-60690176:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3154296875	2	597.81693	1193.61931	-0.11528	-6.8915E-05	-2.8666	-0.0017137	-2.9818	-0.0017826	597.8147320246895	39.536	1.838	39.536	39.237	41.075	0					114	65	3	0	0	0	0.44938	1	7253	7253		4.897	0	1	165870	+		26298	11931	17521	17686	35239	35239					0.0302421925462113
YVPAMIELF	9	Unmodified	_YVPAMIELF_					0	0	0			REV__ENSG00000140688|ENST00000327237|RUSF1	REV__ENSG00000140688|ENST00000327237|RUSF1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.78173828125	2	541.783179	1081.5518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.743	1	97.743	97.243	98.243	0								0	0	0	0.2699	1	24859	24859		5.2307	0	1		+		26299	9381	17522	17687	35240	35240					0.014290529994241297
YVPGPSVP	8	Unmodified	_YVPGPSVP_					0	0	0			REV__FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant	REV__FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	408.20635986328125	2	408.218529	814.422505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.793	1	38.793	38.293	39.293	0								0	0	0	0.38822	1	6929	6929		6.3541	3.4649	1		+		26300	8273	17523	17688	35241	35241					0.007870394316682905
YVPGQCKSQLD	11	Unmodified	_YVPGQCKSQLD_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.297607421875	2	619.297713	1236.58087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.919	1	98.961	98.461	99.461	0.041931								0	0	0	0.33908	1	25063	25063		1.0715	0.38109	1		+		26301	9963	17524	17689	35242	35242					-0.027954544422300387
YVPRVLRR	8	Unmodified	_YVPRVLRR_					0	0	0		ENSG00000104679|ENST00000265806|R3HCC1	ENSG00000104679|ENST00000265806|R3HCC1	ENSG00000104679|ENST00000265806|R3HCC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.3184814453125	2	529.832717	1057.65088	0.37761	0.00020007	2.0569	0.0010898	2.4345	0.0012899	529.8337170083431	61.213	0.30135	61.213	61.032	61.333	0					15	10	2	0	0	0	0.35759	1	13685	13685		10.183	0.83596	1	50644			26302	1422	17525	17690	35243	35243					0.12436256799219336
YVPSHLYHMVF	11	Unmodified	_YVPSHLYHMVF_					0	0	0		ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1	ENSG00000152256|ENST00000282077|PDK1	ENSG00000152256|ENST00000282077|PDK1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	464.8969421386719	3	464.897152	1391.66963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.703	1	44.791	44.291	45.291	0.08754								0	0	0	0.33835	1	8584	8584		1.3296	0.11481	1				26303	3493	17526	17691	35244	35244					-0.01053994411927306
YVQDYEDFM	9	Oxidation (M)	_YVQDYEDFM(Oxidation (M))_		YVQDYEDFM(1)		YVQDYEDFM(46)	0	0	1		nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J;CTDSPL2-EIF3J|1|fusion;nc|ENSG00000104131|O75822-2|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.2398681640625	2	613.239529	1224.46451	0.2485	0.00015239	-0.08192	-5.0236E-05	0.16659	0.00010216	613.2392644498483	55.436	0.55935	55.436	55.19	55.749	0					36	19	3	0	0	0	0.038996	1	11978	11978		45.74	34.916	1	234890			26304	252	17527	17692	35245	35245		9			-0.1387481773278978
YVQDYEDFM	9	Oxidation (M)	_YVQDYEDFM(Oxidation (M))_		YVQDYEDFM(1)		YVQDYEDFM(53)	0	0	1		nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J;CTDSPL2-EIF3J|1|fusion;nc|ENSG00000104131|O75822-2|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	613.2393798828125	2	613.239529	1224.46451	0.25879	0.0001587	0.21622	0.0001326	0.47501	0.00029129	613.239597687262	55.408	0.46204	55.473	55.268	55.73	0.065128					33	17	3	0	0	0	0.026809	1	11824	11824		53.404	29.383	1	207080			26305	252	17527	17692	35246	35246		9			-0.1387481773278978
YVQKHNIQA	9	Unmodified	_YVQKHNIQA_					0	0	0		ENST00000592194.1_1_17:66508623-66511738:+|nuORF;nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	ENST00000592194.1_1_17:66508623-66511738:+|nuORF	ENST00000592194.1_1_17:66508623-66511738:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.284423828125	2	550.795998	1099.57744	0.40288	0.0002219	-0.060886	-3.3536E-05	0.34199	0.00018837	550.7958988497368	38.001	1.7042	38.001	37.675	39.379	0					140	58	4	0	0	0	0.32112	1	6950	6950		3.9444	1.0552	1	739240			26306	1615	17528	17693	35247	35247					0.03163663566078867
YVQLLSSLSW	10	Unmodified	_YVQLLSSLSW_					0	0	0			REV__ENST00000534119.1_1_11:58715222-58723497:+|nuORF	REV__ENST00000534119.1_1_11:58715222-58723497:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2437744140625	2	598.321514	1194.62847	0.37996	0.00022734	-0.16829	-0.00010069	0.21167	0.00012665	598.3217167663	55.811	0.4282	55.811	55.635	56.063	0					23	14	2	0	0	0	0.31616	1	12085	12085		10.074	2.1638	1	83884	+		26307	12369	17529	17694	35248	35248					0.038945678202935596
YVQLLSSLSW	10	Unmodified	_YVQLLSSLSW_					0	0	0			REV__ENST00000534119.1_1_11:58715222-58723497:+|nuORF	REV__ENST00000534119.1_1_11:58715222-58723497:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2434692382812	2	598.321514	1194.62847	0.23605	0.00014123	0.66664	0.00039887	0.90269	0.0005401	598.3218759994229	55.691	0.36362	55.757	55.646	56.01	0.065128					20	12	2	0	0	0	0.31616	1	11887	11887		10.074	4.3421	1	80856	+		26308	12369	17529	17694	35249	35249					0.038945678202935596
YVQNQILEL	9	Unmodified	_YVQNQILEL_					0	0	0		ENST00000426919.5_1_10:103345907-103347065:-|nuORF	ENST00000426919.5_1_10:103345907-103347065:-|nuORF	ENST00000426919.5_1_10:103345907-103347065:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.2950439453125	2	560.305864	1118.59717	0.47935	0.00026858	0.36435	0.00020415	0.8437	0.00047273	560.3059025475004	59.901	0.42477	59.901	59.758	60.183	0					29	14	3	0	0	0	0.25979	1	13386	13386		11.64	0.81637	1	176410			26309	6475	17530	17695	35250	35250					0.04261994786179457
YVQPFLGWNQ	10	Unmodified	_YVQPFLGWNQ_					0	0	0		ENST00000600463.1_1_19:18288394-18288718:+|nuORF	ENST00000600463.1_1_19:18288394-18288718:+|nuORF	ENST00000600463.1_1_19:18288394-18288718:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	626.3112182617188	2	626.31148	1250.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.065	1	55.13	54.63	55.63	0.065128								0	0	0	0.33877	1	11720	11720		1.6526	0	1				26310	7296	17531	17696	35251	35251					-0.00687183119657675
YVQYWHYTL	9	Unmodified	_YVQYWHYTL_					0	0	0		SNX13|p.Y120H|1|0.22|ENSG00000071189|chr7:17890445-17890445|A/G|missense_variant	SNX13|p.Y120H|1|0.22|ENSG00000071189|chr7:17890445-17890445|A/G|missense_variant	SNX13|p.Y120H|1|0.22|ENSG00000071189|chr7:17890445-17890445|A/G|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	637.2691040039062	2	636.806031	1271.59751	0.43059	0.0002742	1.8247	0.001162	2.2553	0.0014362	637.3085770166507	64.394	0.37724	64.394	64.198	64.575	0					17	12	2	0	0	0	0.24635	1	14690	14690		10.824	2.6684	1	77376			26311	13376	17532	17697	35252	35252					-0.027425854939565397
YVQYWHYTL	9	Unmodified	_YVQYWHYTL_					0	0	0		SNX13|p.Y120H|1|0.22|ENSG00000071189|chr7:17890445-17890445|A/G|missense_variant	SNX13|p.Y120H|1|0.22|ENSG00000071189|chr7:17890445-17890445|A/G|missense_variant	SNX13|p.Y120H|1|0.22|ENSG00000071189|chr7:17890445-17890445|A/G|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	636.806031	1271.59751	0.3957	0.00025198	1.9212	0.0012234	2.3169	0.0014754	636.8072011848111	64.318	0.37988	64.389	64.23	64.61	0.071014	-0.0024858	5.6454E-05	NaN	10.824	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93174			26312	13376	17532	17697							-0.027425854939565397
YVRAHYYYCK	10	Unmodified	_YVRAHYYYCK_					0	0	0			REV__ENST00000580980.1_1_17:38142938-38146259:+|nuORF	REV__ENST00000580980.1_1_17:38142938-38146259:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.2193908691406	3	455.885135	1364.63358	0.26069	0.00011884	-0.75081	-0.00034228	-0.49012	-0.00022344	455.88472039044484	104.38	0.22427	104.42	104.31	104.53	0.034004					32	20	2	0	0	0	0.31837	1	26664	26664		1.9064	0	1	389620	+		26313	8612	17533	17698	35253	35253					-0.03415451588762153
YVRDNCHPFK	10	Unmodified	_YVRDNCHPFK_					0	0	0		ENST00000449739.6_1_4:73923833-73935428:-|nuORF;nc|ENSG00000163626|Q8N8Q8|COX18;ENSG00000163626|ENST00000507544|COX18	ENST00000449739.6_1_4:73923833-73935428:-|nuORF	ENST00000449739.6_1_4:73923833-73935428:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.7869262695312	2	639.806039	1277.59753	0.44919	0.0002874	-1.5322	-0.0009803	-1.083	-0.00069291	639.8048677206364	70.291	0.66991	70.291	70.067	70.737	0					55	24	3	0	0	0	0.45443	1	16554	16554		3.9444	0.3479	1	323950			26314	3928	17534	17699	35254	35254					-0.030169087656304328
YVRDNCHPFK	10	Unmodified	_YVRDNCHPFK_					0	0	0		ENST00000449739.6_1_4:73923833-73935428:-|nuORF;nc|ENSG00000163626|Q8N8Q8|COX18;ENSG00000163626|ENST00000507544|COX18	ENST00000449739.6_1_4:73923833-73935428:-|nuORF	ENST00000449739.6_1_4:73923833-73935428:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.7861328125	2	639.806039	1277.59753	0.4145	0.0002652	-1.3735	-0.00087877	-0.959	-0.00061357	639.8049564720087	70.177	0.65637	70.238	70.013	70.67	0.060562					55	27	3	0	0	0	0.43972	1	16336	16336		6.7232	1.8262	1	223630			26315	3928	17534	17699	35255	35255					-0.030169087656304328
YVRELYTV	8	Unmodified	_YVRELYTV_					0	0	0		nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911-6|MCF2	nc|ENSG00000101977|P10911-6|MCF2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	521.7814331054688	2	521.782025	1041.5495	-0.010731	-5.5991E-06	-0.20399	-0.00010644	-0.21472	-0.00011204	521.7817691887846	45.418	0.45403	45.506	45.321	45.775	0.08754					45	16	4	0	0	0	0.48462	1	8783	8783		14.838	0	1	170200			26316	1285	17535	17700	35256	35256					0.030383405859765844
YVRGEEAETPL	11	Unmodified	_YVRGEEAETPL_					0	0	0			REV__ENST00000383693.7_1_3:100120104-100120320:+|nuORF	REV__ENST00000383693.7_1_3:100120104-100120320:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8794860839844	3	421.878704	1262.61428	0.38968	0.0001644	3.1106	0.0013123	3.5002	0.0014767	421.87976250488197	48.485	0.29464	48.485	48.311	48.605	0					16	9	2	0	0	0	0.39906	1	9873	9873		2.084	0	1	50538	+		26317	11680	17536	17701	35257	35257					-0.006521293986452292
YVRLGPGFFY	10	Unmodified	_YVRLGPGFFY_					0	0	0		ENST00000222573.4_1_7:20371422-20403260:+|nuORF	ENST00000222573.4_1_7:20371422-20403260:+|nuORF	ENST00000222573.4_1_7:20371422-20403260:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.8214721679688	2	609.818941	1217.62333	0.32299	0.00019697	-0.30919	-0.00018855	0.013805	8.4188E-06	609.8187616458197	77.022	0.50123	77.022	76.73	77.231	0					59	17	5	0	0	0	0.40987	1	18525	18525		10.824	3.5347	1	710060			26318	5799	17537	17702	35258	35258					0.023223087483529525
YVRPRVFG	8	Unmodified	_YVRPRVFG_					0	0	0		HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.72137451171875	2	497.285069	992.555585	0.14639	7.2799E-05	-1.276	-0.00063452	-1.1296	-0.00056172	497.28439386241746	45.929	0.60575	46.014	45.788	46.393	0.085621					47	22	3	0	0	0	0.3576	1	9009	9009		5.7604	0	1	217020			26319	3148	17538	17703	35259	35259					0.05900903608187491
YVRTFFPEF	9	Unmodified	_YVRTFFPEF_					0	0	0		ENSG00000184544|ENST00000571134|DHRS7C;nc|ENSG00000184544|A6NNS2|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.2994995117188	2	603.303124	1204.5917	0.80775	0.00048732	-1.1193	-0.00067526	-0.31152	-0.00018794	603.3024459940098	65.256	3.2217	65.256	63.142	66.364	0					231	115	3	0	0	0	0.30005	1	14671	14671		6.7232	2.1943	1	785950			26320	4983	17539	17704	35260	35260					-0.0024168400561848102
YVSHPLWCLSF	11	Unmodified	_YVSHPLWCLSF_					0	0	0			REV__ENSG00000135973|ENST00000258456|GPR45	REV__ENSG00000135973|ENST00000258456|GPR45	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	451.5560607910156	3	451.221636	1350.64308	0.24653	0.00011124	-0.27293	-0.00012315	-0.026402	-1.1913E-05	451.555843958483	104.56	0.25306	104.6	104.48	104.73	0.033997					45	25	3	0	0	0	0.32676	1	26739	26739		14.957	9.9096	1	295870	+		26321	9228	17540	17705	35261	35261					-0.018216833032511204
YVSKYIDYI	9	Unmodified	_YVSKYIDYI_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	582.3021240234375	2	582.30279	1162.59103	0.38347	0.00022329	-1.2848	-0.00074814	-0.90132	-0.00052484	582.3021375573213	89.209	0.46285	89.209	88.982	89.445	0					41	18	3	0	0	0	0.11547	1	22278	22278		29.082	0	1	218560			26322	2924	17541	17706	35262	35262					0.01623476554664194
YVSKYIDYI	9	Unmodified	_YVSKYIDYI_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	582.30224609375	2	582.30279	1162.59103	0.49973	0.00029099	-1.6778	-0.00097702	-1.1781	-0.00068602	582.3018020589262	89.178	0.40184	89.211	89.034	89.435	0.032257					33	14	3	0	0	0	0.0569	2	22075	22075;22120		41.84	9.5341	1	352970			26323	2924	17541	17706	35263;35264	35263					0.01623476554664194
YVSKYTFF	8	Unmodified	_YVSKYTFF_					0	0	0			REV__tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	REV__tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	527.234130859375	2	527.765843	1053.51713	0.26811	0.0001415	0.2692	0.00014208	0.53732	0.00028358	528.2650963892713	82.631	0.36651	82.653	82.537	82.904	0.021751					17	12	2	0	0	0	0.35759	1	20120	20120		13.508	3.3245	1	60470	+		26324	13069	17542	17707	35265	35265					-0.0074844681698778
YVSLIEAII	9	Unmodified	_YVSLIEAII_					0	0	0			REV__ENST00000484396.1_1_20:24988400-24990223:-|nuORF	REV__ENST00000484396.1_1_20:24988400-24990223:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	510.8023376464844	2	510.802426	1019.5903	0.61528	0.00031429	0.02654	1.3557E-05	0.64182	0.00032784	510.80231388742607	84.996	0.32749	85.019	84.856	85.183	0.023125					15	12	2	0	0	0	0.20845	1	20837	20837		21.747	0	1	91842	+		26325	9721	17543	17708	35266	35266					0.08128681905623125
YVSMPYMTGF	10	Unmodified	_YVSMPYMTGF_					0	0	0			REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.2437744140625	2	598.261753	1194.50895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.815	1	55.815	55.315	56.315	0								0	0	0	0.31427	1	12085	12085		15.847	0	1		+		26326	9680	17544	17709	35267	35267					-0.08052085120311858
YVSMPYMTGF	10	Unmodified	_YVSMPYMTGF_					0	0	0			REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.2434692382812	2	598.261753	1194.50895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.769	1	55.834	55.334	56.334	0.065128								0	0	0	0.33092	1	11935	11935		10.824	0	1		+		26327	9680	17544	17709	35268	35268					-0.08052085120311858
YVTEAEDSIE	10	Unmodified	_YVTEAEDSIE_					0	0	0		ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK	ENSG00000010671|ENST00000308731|BTK	ENSG00000010671|ENST00000308731|BTK	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.7713012695312	2	578.256234	1154.49791	0.61057	0.00035307	0.29319	0.00016954	0.90376	0.0005226	578.2564849196522	85.797	0.56798	85.822	85.549	86.117	0.025169					55	20	4	0	0	0	0.37232	1	21127	21127		14.838	4.0143	1	892160			26328	415	17545	17710	35269	35269					-0.07315492689212988
YVTISSLVF	9	Unmodified	_YVTISSLVF_					0	0	0		ENST00000589459.5_1_17:66423364-66453609:-|nuORF;nc|ENSG00000070540|Q5MNZ9-2|WIPI1;ENSG00000070540|ENST00000262139|WIPI1	ENST00000589459.5_1_17:66423364-66453609:-|nuORF	ENST00000589459.5_1_17:66423364-66453609:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	514.7779541015625	2	514.786776	1027.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.727	1	88.759	88.259	89.259	0.032257								0	0	0	0.090962	1	21956	21956		36.044	1.9418	1				26329	760	17546	17711	35270	35270					0.04632108871510354
YVTTELYPP	9	Unmodified	_YVTTELYPP_					0	0	0			REV__ENST00000462315.5_1_3:122278498-122282968:-|nuORF	REV__ENST00000462315.5_1_3:122278498-122282968:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.2720947265625	2	541.773865	1081.53318	0.42674	0.00023119	-0.4711	-0.00025523	-0.044367	-2.4037E-05	541.7734804514898	88.501	0.70473	88.501	88.374	89.078	0					48	28	3	0	0	0	0.25875	1	22193	22193		1.8442	0	1	216940	+		26330	11967	17547	17712	35271	35271					-0.004327853707536633
YVTVPEGLL	9	Unmodified	_YVTVPEGLL_					0	0	0		nc|ENSG00000115129|Q53FA7-2|TP53I3;ENSG00000115129|ENST00000238721|TP53I3	nc|ENSG00000115129|Q53FA7-2|TP53I3	nc|ENSG00000115129|Q53FA7-2|TP53I3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	495.7807922363281	2	495.778951	989.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.723	1	86.723	86.223	87.223	0								0	0	0	0.23884	1	21510	21510		11.64	2.2929	1				26331	1879	17548	17713	35272	35272					0.04815822354487409
YVTYKFVFG	9	Unmodified	_YVTYKFVFG_					0	0	0			REV__ENST00000557071.1_3_14:102380750-102391606:+|nuORF	REV__ENST00000557071.1_3_14:102380750-102391606:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	562.2936401367188	2	562.294768	1122.57498	0.38156	0.00021455	-2.5862	-0.0014542	-2.2047	-0.0012397	562.2933161466823	56.033	0.17879	56.033	55.915	56.094	0					9	5	2	0	0	0	0.19376	1	12164	12164		25.399	7.253	1	89210	+		26332	12463	17549	17714	35273	35273					0.018598151084233905
YVTYKFVFG	9	Unmodified	_YVTYKFVFG_					0	0	0			REV__ENST00000557071.1_3_14:102380750-102391606:+|nuORF	REV__ENST00000557071.1_3_14:102380750-102391606:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	562.294768	1122.57498	0.34034	0.00019137	-2.2852	-0.0012849	-1.9448	-0.0010936	562.2934928953528	56.001	0.36323	56.068	55.759	56.122	0.066448	0.017355	0.00024667	NaN	25.399	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70788	+		26333	12463	17549	17714							0.018598151084233905
YVVALALFQA	10	Unmodified	_YVVALALFQA_					0	0	0			REV__LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	REV__LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.8162841796875	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.6	1	117.6	117.1	118.1	0								0	0	0	0.34018	1	29820	29820		0	0	1		+		26334	10302	17550	17715	35274	35274					0.07411790516789551
YVVANIGTR	9	Unmodified	_YVVANIGTR_					0	0	0		VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.763671875	2	496.779816	991.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.929	1	51.996	51.496	52.496	0.067173								0	0	0	0.23452	1	10764	10764		12.532	1.4171	1				26335	13762	17551	17716	35275	35275					0.0489687616310448
YVVAWGEIPF	10	Unmodified	_YVVAWGEIPF_					0	0	0			REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF	REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.8021850585938	2	590.8055	1179.59645	0.60656	0.00035836	-3.5751	-0.0021122	-2.9685	-0.0017538	590.8039236054478	96.941	0.17152	96.981	96.939	97.111	0.039772					20	8	4	0	0	0	0.42335	1	24479	24479		9.3831	0	1	169660	+		26336	9589	17552	17717	35276	35276					0.013832001371156366
YVVEKEEQL	9	Unmodified	_YVVEKEEQL_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.79541015625	2	568.795329	1135.5761	0.058445	3.3243E-05	-0.093649	-5.3267E-05	-0.035204	-2.0024E-05	568.7951652585552	39.213	0.35018	39.213	39.083	39.433	0					24	12	3	0	0	0	0.30005	1	7060	7060		6.7232	0	1	36224			26337	5431	17553	17718	35277	35277					0.01373984686665608
YVVEKVLDR	9	Unmodified	_YVVEKVLDR_					0	0	0		ENSG00000094916|ENST00000209875|CBX5;ENSG00000108468|ENST00000225603|CBX1	ENSG00000094916|ENST00000209875|CBX5	ENSG00000094916|ENST00000209875|CBX5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7659912109375	2	560.821681	1119.62881	-0.019546	-1.0962E-05	0.56995	0.00031964	0.55041	0.00030868	560.821970709515	39.865	0.26344	39.865	39.748	40.012	0					14	8	2	0	0	0	0.24819	1	7269	7269		10.8	2.8894	1	28864			26338	1090	17554	17719	35278	35278					0.07377987540121467
YVVFDSVKPF	10	Unmodified	_YVVFDSVKPF_					0	0	0			REV__ENST00000328434.7_1_17:40949739-40949844:-|nuORF	REV__ENST00000328434.7_1_17:40949739-40949844:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2891235351562	2	600.818607	1199.62266	0.5759	0.00034601	-1.6057	-0.00096474	-1.0298	-0.00061872	600.8183856063453	92.442	0.13084	92.479	92.371	92.501	0.03653					5	4	2	0	0	0	0.31731	1	23079	23079		6.2058	0.47393	1	42817	+		26339	11414	17555	17720	35279	35279					0.030834693086262632
YVVFSLLWG	9	Unmodified	_YVVFSLLWG_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000495930.1_1_13:113527892-113530303:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	542.29638671875	2	542.29731	1082.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.205	1	99.248	98.748	99.748	0.042839								0	0	0	0.23884	1	25147	25147		11.64	2.2929	1				26340	732	17556	17721	35280	35280					0.042081189710415856
YVVHRNVT	8	Unmodified	_YVVHRNVT_					0	0	0		ENSG00000183798|ENST00000332312|EMILIN3	ENSG00000183798|ENST00000332312|EMILIN3	ENSG00000183798|ENST00000332312|EMILIN3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	494.27130126953125	2	494.272158	986.529764	0.35424	0.00017509	-0.26494	-0.00013095	0.089306	4.4142E-05	494.27147984333794	61.22	0.3872	61.293	61.027	61.414	0.073421					14	12	2	0	0	0	0.48651	1	13605	13605		14.582	2.0501	1	45258			26341	4942	17557	17722	35281	35281					0.03596009365901409
YVVKEVQW	8	Unmodified	_YVVKEVQW_					0	0	0		ENST00000223023.4_1_7:123349191-123389113:-|nuORF	ENST00000223023.4_1_7:123349191-123389113:-|nuORF	ENST00000223023.4_1_7:123349191-123389113:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2662353515625	2	525.784567	1049.55458	-0.20755	-0.00010913	-0.16783	-8.8243E-05	-0.37539	-0.00019737	525.7844766827061	30.163	0.35961	30.238	30.088	30.447	0.075403					25	22	2	0	0	0	0.3576	1	4182	4182		2.8892	0	1	15066			26342	5801	17558	17723	35282	35282					0.031786444485987886
YVVMYMLM	8	Unmodified	_YVVMYMLM_					0	0	0		tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	524.7433471679688	2	525.24706	1048.47957	0.10921	5.7364E-05	-0.40567	-0.00021308	-0.29646	-0.00015571	525.2468870489137	39.074	0.39963	39.074	38.918	39.318	0					20	14	2	0	0	0	0.3576	1	7010	7010		6.3541	1.1234	1	34477			26343	13594	17559	17724	35283	35283					-0.04273320670154135
YVVMYMLM	8	Unmodified	_YVVMYMLM_					0	0	0		tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	524.7914428710938	2	525.24706	1048.47957	-0.015697	-8.2446E-06	0.44102	0.00023164	0.42532	0.0002234	525.2472314163077	34.787	0.87846	34.864	34.688	35.567	0.076244					75	36	4	0	0	0	0.46808	1	5768	5768		17.087	7.7391	1	262480			26344	13594	17559	17724	35284	35284					-0.04273320670154135
YVVMYMLM	8	Unmodified	_YVVMYMLM_					0	0	0		tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.2471313476562	2	525.24706	1048.47957	0.15035	7.8969E-05	0.54317	0.0002853	0.69351	0.00036427	525.2472048303515	36.959	2.7807	37.04	36.049	38.83	0.081711					254	105	5	0	0	0	0.53771	1	6679	6679		2.8892	0.31174	1	235720			26345	13594	17559	17724	35285	35285					-0.04273320670154135
YVVTDHGS	8	Unmodified	_YVVTDHGS_					0	0	0		nc|ENSG00000146648|P00533-2|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR;ENSG00000146648|ENST00000275493|EGFR	nc|ENSG00000146648|P00533-2|EGFR	nc|ENSG00000146648|P00533-2|EGFR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	439.218505859375	2	439.20615	876.397747	-0.182	-7.9936E-05	0.34829	0.00015297	0.16629	7.3035E-05	439.20627434004314	32.563	0.49258	32.637	32.473	32.965	0.073784					52	25	3	0	0	0	0.53771	1	4911	4911		2.8892	0	1	69085			26346	3295	17560	17725	35286	35286					-0.04539640441703341
YVVVFYLN	8	Unmodified	_YVVVFYLN_					0	0	0			REV__SLC11A2|p.M492L|1|0.5|ENSG00000110911|chr12:50990896-50990896|T/A|missense_variant	REV__SLC11A2|p.M492L|1|0.5|ENSG00000110911|chr12:50990896-50990896|T/A|missense_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.78662109375	2	508.776211	1015.53787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.305	1	87.332	86.832	87.832	0.027573								0	0	0	0.38822	1	21527	21527		10.183	0.80027	1		+		26347	12985	17561	17726	35287	35287					0.03072143562656038
YVVWYTLW	8	Unmodified	_YVVWYTLW_					0	0	0			REV__ENST00000591735.2_1_19:1491211-1495711:+|nuORF	REV__ENST00000591735.2_1_19:1491211-1495711:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2977905273438	2	565.289485	1128.56442	0.5346	0.0003022	-0.16831	-9.5144E-05	0.36629	0.00020706	565.2884857052202	97.742	0.68357	97.783	97.503	98.187	0.040855					70	35	3	0	0	0	0.52502	1	24768	24768		9.3474	0	1	233830	+		26348	8778	17562	17727	35288	35288					0.005278324539858659
YVWCVCGVAF	10	Unmodified	_YVWCVCGVAF_					0	0	0		ENST00000426335.6_1_11:47186834-47186960:-|nuORF	ENST00000426335.6_1_11:47186834-47186960:-|nuORF	ENST00000426335.6_1_11:47186834-47186960:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.279052734375	2	573.759181	1145.50381	0.49975	0.00028673	1.5884	0.00091138	2.0882	0.0011981	573.7603070341474	92.163	0.29157	92.163	92.06	92.351	0					13	10	2	0	0	0	0.31667	1	23156	23156		7.9102	0	1	47917			26349	6471	17563	17728	35289	35289					-0.0631234419224711
YVWFVIFLA	9	Unmodified	_YVWFVIFLA_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7974853515625	2	579.323328	1156.6321	0.49258	0.00028536	-2.3571	-0.0013655	-1.8645	-0.0010802	579.3210784573716	69.754	0.34638	69.814	69.667	70.013	0.060562					22	12	3	0	0	0	0.237	1	16222	16222		14.582	2.0501	1	94180			26350	4009	17564	17729	35290	35290					0.0600528238478546
YVWMRWRW	8	Unmodified	_YVWMRWRW_					0	0	0			REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	641.3235473632812	2	641.818753	1281.62295	0.054771	3.5153E-05	-0.9386	-0.00060241	-0.88383	-0.00056726	641.817985326986	73.728	0.46181	73.728	73.487	73.949	0					22	15	2	0	0	0	0.3576	1	17507	17507		2.8892	1.045	1	91347	+		26351	12986	17565	17730	35291	35291					-0.006593894525167343
YVYLVFEL	8	Unmodified	_YVYLVFEL_					0	0	0		nc|ENSG00000214575|Q9BZB8-4|CPEB1;nc|ENSG00000214575|Q9BZB8-2|CPEB1;nc|ENSG00000214575|Q9BZB8-3|CPEB1;nc|ENSG00000214575|Q9BZB8|CPEB1;ENSG00000214575|ENST00000684509|CPEB1	nc|ENSG00000214575|Q9BZB8-4|CPEB1	nc|ENSG00000214575|Q9BZB8-4|CPEB1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.30322265625	2	523.283869	1044.55318	0.38142	0.00019959	-0.28792	-0.00015066	0.093506	4.893E-05	523.2836369454616	81.516	0.3997	81.537	81.308	81.708	0.021866					23	14	2	0	0	0	0.35499	1	19814	19814		15.768	2.2603	1	158130			26352	5569	17566	17731	35292	35292					0.032690103598497444
YVYNYEAE	8	Unmodified	_YVYNYEAE_					0	0	0		CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	525.74072265625	2	525.724372	1049.43419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.814	1	16.814	16.314	17.314	0								0	0	0	0.38822	1	802	802		0	0	1			+	26353	209	17567	17732	35293	35293					-0.08854808335695452
YVYPFTALCI	10	Unmodified	_YVYPFTALCI_					0	0	0			REV__OR5M11|p.R164Afs*2|1|0.1|ENSG00000255223|chr11:56542768-56542768|G/-|frameshift_variant	REV__OR5M11|p.R164Afs*2|1|0.1|ENSG00000255223|chr11:56542768-56542768|G/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.2810668945312	2	595.301736	1188.58892	0.31813	0.00018938	-0.93793	-0.00055835	-0.6198	-0.00036897	595.301110003362	67.809	0.70795	67.809	67.669	68.377	0					34	26	2	0	0	0	0.31551	1	15716	15716		11.64	3.047	1	139970	+		26354	11091	17568	17733	35294	35294					0.00216724545202851
YVYQRASRF	9	Unmodified	_YVYQRASRF_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.3092651367188	2	595.309272	1188.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.237	1	59.309	58.809	59.809	0.072338								0	0	0	0.27427	1	12990	12990		4.3292	0	1		+		26355	10622	17569	17734	35295	35295					0.017233524574066905
YVYTHIRNA	9	Unmodified	_YVYTHIRNA_					0	0	0			REV__ENSG00000149507|ENST00000278855|OOSP2	REV__ENSG00000149507|ENST00000278855|OOSP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.2975463867188	2	568.795998	1135.57744	0.17407	9.9013E-05	-1.0368	-0.00058975	-0.86277	-0.00049074	569.2965508439675	39.123	0.37358	39.21	39.017	39.391	0.086884					23	14	2	0	0	0	0.29576	1	6904	6904		7.2892	1.0834	1	42314	+		26356	9616	17570	17735	35296	35296					0.015076635660989268
YVYTHIRNA	9	Unmodified	_YVYTHIRNA_					0	0	0			REV__ENSG00000149507|ENST00000278855|OOSP2	REV__ENSG00000149507|ENST00000278855|OOSP2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.795998	1135.57744	0.17407	9.9013E-05	-1.0368	-0.00058975	-0.86277	-0.00049074	569.2965508439675	39.123	0.37358	39.21	39.017	39.391	0.086884	-0.001319	0.0001712	NaN	7.2892	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42314	+		26357	9616	17570	17735							0.015076635660989268
YVYYVRST	8	Unmodified	_YVYYVRST_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	525.7808227539062	2	525.766374	1049.5182	0.43124	0.00022673	2.0418	0.0010735	2.4731	0.0013003	525.7673482543536	81.176	0.22925	81.199	81.08	81.31	0.023613					12	7	2	0	0	0	0.35759	1	19629	19629		9.3474	0.75416	1	72649			26358	4415	17571	17736	35297	35297					-0.004582324480907118
YVYYVRST	8	Unmodified	_YVYYVRST_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	525.766374	1049.5182	0.77733	0.0004087	1.537	0.0008081	2.3143	0.0012168	525.7667936118181	81.207	0.28714	81.207	81.087	81.374	0	0.0041075	-0.0002162	NaN	9.3474	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70818			26359	4415	17571	17736							-0.004582324480907118
YWCLGPEIL	9	Unmodified	_YWCLGPEIL_					0	0	0		ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENST00000600027.5_1_19:49999677-50000944:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7752075195312	2	547.272978	1092.5314	0.62054	0.00033961	-0.30776	-0.00016843	0.31278	0.00017118	547.272676688523	98.019	0.44077	98.019	97.806	98.246	0					49	23	3	0	0	0	0.25979	1	24905	24905		11.64	0.81637	1	285420			26360	7295	17572	17737	35298	35298					-0.011161176603764034
YWDSWYNN	8	Unmodified	_YWDSWYNN_					0	0	0		nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.2282104492188	2	574.227613	1146.44067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.453	1	29.532	29.032	30.032	0.078287								0	0	0	0.38822	1	4013	4013		0.69038	0	1				26361	874	17573	17738	35299	35299					-0.1266887038425466
YWEPAEVFL	9	Unmodified	_YWEPAEVFL_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.2816772460938	2	577.281857	1152.54916	0.081839	4.7244E-05	-0.28273	-0.00016321	-0.20089	-0.00011597	577.2816495014155	90.707	0.69115	90.742	90.478	91.169	0.035446					36	26	2	0	0	0	0.10833	1	22577	22577		30.637	13.694	1	408780			26362	3235	17574	17739	35300	35300					-0.021010791338540002
YWGTPIPVL	9	Unmodified	_YWGTPIPVL_					0	0	0		tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	523.8101806640625	2	523.289485	1044.56442	0.48085	0.00025162	0.064699	3.3856E-05	0.54555	0.00028548	523.28914117601	97.37	0.52563	97.411	97.189	97.714	0.040855					57	26	3	0	0	0	0.29105	1	24651	24651		7.9102	1.7044	1	228950			26363	13684	17575	17740	35301	35301					0.04391832454007272
YWHWWILF	8	Unmodified	_YWHWWILF_					0	0	0			REV__ENST00000304661.5_1_X:119759908-119760061:-|nuORF	REV__ENST00000304661.5_1_X:119759908-119760061:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.2096862792969	3	417.543038	1249.60729	0.082721	3.454E-05	2.0997	0.00087673	2.1824	0.00091127	417.54376918762256	71.575	0.16515	71.634	71.542	71.707	0.058578					7	5	2	0	0	0	0.3576	1	16747	16747		1.8442	0.19162	1	91301	+		26364	11352	17576	17741	35302	35302					-0.0075335269793868065
YWKFHFQN	8	Unmodified	_YWKFHFQN_					0	0	0		ENST00000524683.5_1_11:121175009-121175207:+|nuORF	ENST00000524683.5_1_11:121175009-121175207:+|nuORF	ENST00000524683.5_1_11:121175009-121175207:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2665405273438	2	585.279983	1168.54541	0.092606	5.4201E-05	-0.50474	-0.00029541	-0.41213	-0.00024121	585.2796384428805	31.29	0.70831	31.29	30.889	31.597	0					50	33	2	0	0	0	0.54097	3	4595	4595;4672;4719		0.69038	0.16561	1	22513			26365	6981	17577	17742	35303;35304;35305	35303					-0.0321170411705225
YWKFHFQN	8	Unmodified	_YWKFHFQN_					0	0	0		ENST00000524683.5_1_11:121175009-121175207:+|nuORF	ENST00000524683.5_1_11:121175009-121175207:+|nuORF	ENST00000524683.5_1_11:121175009-121175207:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2665405273438	2	585.279983	1168.54541	0.28044	0.00016413	-0.48954	-0.00028652	-0.2091	-0.00012238	585.2796401200407	31.131	0.84069	31.205	30.892	31.733	0.073782					63	41	2	0	0	0	0.54097	4	4457	4457;4498;4596;4648		0.69038	0.16561	1	26623			26366	6981	17577	17742	35306;35307;35308;35309	35306					-0.0321170411705225
YWLHERVFP	9	Unmodified	_YWLHERVFP_					0	0	0		nc|ENSG00000165923|Q5U5Z8-2|AGBL2;ENST00000529712.5_1_11:47690447-47736202:-|nuORF;AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant;ENSG00000165923|ENST00000525123|AGBL2	nc|ENSG00000165923|Q5U5Z8-2|AGBL2	nc|ENSG00000165923|Q5U5Z8-2|AGBL2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	623.7457275390625	2	623.822015	1245.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.422	1	94.461	93.961	94.961	0.038086								0	0	0	0.28631	1	23690	23690		1.8442	0.19162	1				26367	17	17578	17743	35310	35310					0.016488269798401234
YWLLCFVL	8	Unmodified	_YWLLCFVL_					0	0	0		ENSG00000091262|ENST00000205557|ABCC6;ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6	ENSG00000091262|ENST00000205557|ABCC6	ENSG00000091262|ENST00000205557|ABCC6	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7828979492188	2	528.782982	1055.55141	-0.16251	-8.5932E-05	-0.11038	-5.8366E-05	-0.27289	-0.0001443	528.7827574587018	27.109	0.31024	27.109	26.974	27.284	0					34	21	2	0	0	0	0.54081	1	3484	3484		0.79363	0	1	22254			26368	1059	17579	17744	35311	35311					0.025856780702497417
YWLLCYPV	8	Unmodified	_YWLLCYPV_					0	0	0			REV__ENST00000328945.6_1_16:82033487-82033676:-|nuORF	REV__ENST00000328945.6_1_16:82033487-82033676:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	529.2344360351562	2	528.764789	1055.51502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.494	1	26.585	26.085	27.085	0.091507								0	0	0	0.38822	1	3147	3147		0	0	1		+		26369	11420	17580	17745	35312	35312					-0.01051198826462496
YWLRRLVNF	9	Unmodified	_YWLRRLVNF_					0	0	0		ENST00000409592.7_1_2:225761057-225796351:-|nuORF	ENST00000409592.7_1_2:225761057-225796351:-|nuORF	ENST00000409592.7_1_2:225761057-225796351:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	423.21197509765625	3	422.90838	1265.70331	0.081628	3.4521E-05	-0.673	-0.00028462	-0.59137	-0.0002501	422.90811138825194	56.513	0.55235	56.58	56.362	56.914	0.066452					31	19	2	0	0	0	0.24683	1	12124	12124		11.495	3.3392	1	100930			26370	6395	17581	17746	35313	35313					0.0810879514217504
YWLYWQDWFRD	11	Unmodified	_YWLYWQDWFRD_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.7069091796875	3	559.921014	1676.74121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.214	1	26.305	25.805	26.805	0.091507								0	0	0	0.34212	1	3067	3067		0	0	1		+		26371	12825	17582	17747	35314	35314					-0.07008783453693468
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(120)HVQNTF	0	0	1		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2741088867188	2	621.274041	1240.53353	-0.17626	-0.0001095	0.41874	0.00026015	0.24248	0.00015065	621.2743119266344	48.58	1.5963	48.58	48.339	49.935	0					109	55	4	0	0	0	0.0014903	3	9894	9852;9894;9938		118.89	91.266	1	533720			26372	1857	17583	17748	35315;35316;35317	35316		110			-0.07711688922563553
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(140)HVQNTF	0	0	1		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.2741088867188	2	621.274041	1240.53353	-0.19367	-0.00012032	0.3961	0.00024608	0.20242	0.00012576	621.2742910691255	50.734	2.7395	50.734	49.935	52.675	0					210	95	3	0	0	0	1.4799E-05	9	10551	10464;10507;10551;10600;10654;10664;10712;10763;10814		144.35	109.95	1	709460			26373	1857	17583	17748	35318;35319;35320;35321;35322;35323;35324;35325;35326	35320		110			-0.07711688922563553
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(140)HVQNTF	0	0	1		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.2742919921875	2	621.274041	1240.53353	-0.013314	-8.2719E-06	0.38088	0.00023663	0.36756	0.00022836	621.2742895507703	48.472	1.1588	48.553	48.301	49.459	0.080032					85	40	4	0	0	0	1.4799E-05	2	9733	9733;9778		144.35	102.51	1	551580			26374	1857	17583	17748	35327;35328	35327		110			-0.07711688922563553
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(170)HVQNTF	0	0	1		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	621.2741088867188	2	621.274041	1240.53353	0.033511	2.082E-05	0.10377	6.4471E-05	0.13728	8.5291E-05	621.2742085428072	50.592	3.1675	50.665	49.533	52.7	0.07312					238	117	4	0	0	0	2.2448E-09	5	10388	10300;10348;10388;10433;10487		172.91	122.97	1	630160			26375	1857	17583	17748	35329;35330;35331;35332;35333	35331		110			-0.07711688922563553
YWMHVQNTF	9	Unmodified	_YWMHVQNTF_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	613.276611328125	2	613.276583	1224.53861	-0.35604	-0.00021835	-0.069046	-4.2344E-05	-0.42508	-0.00026069	613.2768039486693	58.63	0.42437	58.63	58.506	58.931	0					26	14	2	0	0	0	0.074645	1	12947	12947		37.974	19.839	1	177940			26376	1857	17583	17749	35334	35334					-0.06467385059931985
YWMHVQNTF	9	Unmodified	_YWMHVQNTF_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	613.276583	1224.53861	0.018899	1.159E-05	0.068327	4.1903E-05	0.087226	5.3494E-05	613.2765724352316	58.542	0.58199	58.612	58.387	58.969	0.070477	-0.0086933	7.9113E-05	NaN	37.974	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267390			26377	1857	17583	17749							-0.06467385059931985
YWMLEVCEE	9	Unmodified	_YWMLEVCEE_					0	0	0		ENSG00000112576|ENST00000372991|CCND3	ENSG00000112576|ENST00000372991|CCND3	ENSG00000112576|ENST00000372991|CCND3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.748046875	2	601.248843	1200.48313	0.36129	0.00021722	-2.5446	-0.0015299	-2.1833	-0.0013127	601.2468805604364	51.181	0.15417	51.251	51.131	51.285	0.069874					6	5	2	0	0	0	0.25875	1	10543	10543		1.8442	0	1	42686			26378	1764	17584	17750	35335	35335					-0.10908979362602622
YWNFTKDIG	9	Unmodified	_YWNFTKDIG_					0	0	0		ENST00000542507.5_2_1:29095522-29095663:+|nuORF	ENST00000542507.5_2_1:29095522-29095663:+|nuORF	ENST00000542507.5_2_1:29095522-29095663:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.2766723632812	2	572.277106	1142.53966	-0.20802	-0.00011904	-0.17331	-9.9179E-05	-0.38133	-0.00021822	572.2770440382503	26.171	0.40399	26.171	26.026	26.43	0					49	34	2	0	0	0	0.35102	1	3222	3222		0	0	1	24344			26379	7069	17585	17751	35336	35336					-0.025908474194011433
YWNIRGLA	8	Unmodified	_YWNIRGLA_					0	0	0		ENSG00000213366|ENST00000241337|GSTM2;nc|ENSG00000213366|P28161-2|GSTM2;ENST00000476040.6_1_1:110210707-110212286:+|nuORF;ENST00000414179.6_1_1:110210737-110211550:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF	ENSG00000213366|ENST00000241337|GSTM2	ENSG00000213366|ENST00000241337|GSTM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	496.7676696777344	2	496.769252	991.52395	0.16058	7.9769E-05	-4.2291	-0.0021009	-4.0685	-0.0020211	496.7670447138861	21.372	0.12146	21.473	21.378	21.499	0.10178					18	11	2	0	0	0	0.53026	1	1742	1742		7.9102	1.187	1	30533			26380	5543	17586	17752	35337	35337					0.02784910854222744
YWPHMMLFM	9	Unmodified	_YWPHMMLFM_					0	0	0			REV__nc|ENSG00000068831|Q7LDG7-3|RASGRP2	REV__nc|ENSG00000068831|Q7LDG7-3|RASGRP2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	628.27783203125	2	628.276683	1254.53881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.95	1	104.95	104.45	105.45	0								0	0	0	0.29233	1	27019	27019		0.6015	0.076735	1		+		26381	8134	17587	17753	35338	35338					-0.07827424655965842
YWRLYQFAF	9	Unmodified	_YWRLYQFAF_					0	0	0		GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant;GABRG1|p.D265Efs*32|1|0.11|ENSG00000163285|chr4:46058338-46058339|-/T|frameshift_variant;ENSG00000163285|ENST00000295452|GABRG1	GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant	GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	647.32421875	2	647.324391	1292.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.299	1	32.373	31.873	32.873	0.07378								0	0	0	0.2927	1	4859	4859		0.52476	0.066424	1				26382	3886	17588	17754	35339	35339					-0.0003828887740837672
YWTFLNDFMM	10	Unmodified	_YWTFLNDFMM_					0	0	0		ENST00000518047.5_1_5:140961898-140962839:-|nuORF	ENST00000518047.5_1_5:140961898-140962839:-|nuORF	ENST00000518047.5_1_5:140961898-140962839:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	456.8642883300781	3	456.531482	1366.57262	-0.20012	-9.136E-05	-1.9687	-0.00089877	-2.1688	-0.00099013	456.8644807417696	28.957	1.1592	29.035	28.647	29.806	0.078287					90	72	2	0	0	0	0.47456	1	3927	3927		0.13989	0.017027	1	55332			26383	6940	17589	17755	35340	35340					-0.09600724683218687
YWVILSGST	9	Unmodified	_YWVILSGST_					0	0	0		NFIX-RALGPS1|3|fusion;NFIX-RALGPS1|4|fusion;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;NFIX-RALGPS1|1|fusion;ENSG00000136828|ENST00000259351|RALGPS1	NFIX-RALGPS1|3|fusion	NFIX-RALGPS1|3|fusion	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	513.2671508789062	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.14	1	105.18	104.68	105.68	0.034004								0	0	0	0.28527	1	26899	26899		2.0598	0	1				26384	2815	17590	17756	35341	35341					0.011666516946661432
YWVSVWPVL	9	Unmodified	_YWVSVWPVL_					0	0	0		ENST00000427419.5_2_2:190445193-190446742:-|nuORF;ENST00000455320.5_2_2:190446526-190446742:-|nuORF	ENST00000427419.5_2_2:190445193-190446742:-|nuORF	ENST00000427419.5_2_2:190445193-190446742:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.8102416992188	2	574.810585	1147.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.857	1	99.9	99.4	100.4	0.042839								0	0	0	0.20792	1	25347	25347		16.942	1.0951	1				26385	6478	17591	17757	35342	35342					0.03871807862356036
YYAIFLLL	8	Unmodified	_YYAIFLLL_					0	0	0			REV__ENSG00000121377|ENST00000240687|TAS2R7	REV__ENSG00000121377|ENST00000240687|TAS2R7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	508.7871398925781	2	508.296779	1014.57901	0.12312	6.258E-05	-3.4917	-0.0017748	-3.3686	-0.0017123	508.2950605612934	87.028	0.2167	87.055	86.982	87.199	0.027573					10	8	2	0	0	0	0.35256	1	21482	21482		17.087	0	1	56135	+		26386	8899	17592	17758	35343	35343					0.07229904602138504
YYAIVAMVI	9	Oxidation (M)	_YYAIVAM(Oxidation (M))VI_		YYAIVAM(1)VI		YYAIVAM(56)VI	0	0	1		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000560023.1_1_15:34533432-34537514:-|nuORF	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	529.7828369140625	2	529.783179	1057.5518	0.37429	0.00019829	-0.1241	-6.5748E-05	0.25019	0.00013254	529.7831859226355	79.208	0.32783	79.208	79.015	79.342	0					16	10	2	0	0	0	0.02311	1	19219	19219		56.048	32.259	1	81174			26387	3000	17593	17759	35344	35344		195			0.025330529994334938
YYAIVAMVI	9	Oxidation (M)	_YYAIVAM(Oxidation (M))VI_					0	0	1		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000560023.1_1_15:34533432-34537514:-|nuORF	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	529.783179	1057.5518	0.28149	0.00014913	0.20102	0.0001065	0.48251	0.00025563	529.7831582588439	79.201	0.26272	79.227	79.071	79.334	0.026436	0.0097528	0.00016418	NaN	56.048	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73757			26388	3000	17593	17759				195			0.025330529994334938
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	577.7743530273438	2	577.773865	1153.53318	0.66057	0.00038166	-0.34373	-0.0001986	0.31684	0.00018306	577.7738821910153	82.128	1.9996	82.128	81.81	83.809	0					221	69	5	0	0	0	4.1078E-06	4	20105	20061;20105;20147;20201		154.46	120.36	1	8841800			26389	2141	17594	17760	35345;35346;35347;35348	35346					-0.037447853707590184
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.7745361328125	2	577.773865	1153.53318	0.40118	0.00023179	-0.089613	-5.1776E-05	0.31157	0.00018002	577.7740626485098	82.099	2.322	82.121	81.846	84.168	0.021866					266	82	5	0	0	0	1.3047E-05	6	19948	19905;19948;19991;20040;20097;20388		146.01	111.9	1	10383000			26390	2141	17594	17760	35349;35350;35351;35352;35353;35354	35350					-0.037447853707590184
YYAMWAAFF	9	Unmodified	_YYAMWAAFF_					0	0	0			REV__nc|ENSG00000099797|Q9NZ01-2|TECR	REV__nc|ENSG00000099797|Q9NZ01-2|TECR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.259871	1168.50519	0.6655	0.00038949	-2.3736	-0.0013892	-1.7081	-0.00099969	585.2579743887368	91.707	0.32533	91.707	91.602	91.927	0					15	11	2	0	0	0	0.24749	1	23048	23048		9.3474	0	1	72242	+		26391	12760	17595	17761	35355	35355					-0.07232386831833537
YYARIGDNL	9	Unmodified	_YYARIGDNL_					0	0	0		ENST00000559156.5_1_15:70968828-70976706:-|nuORF;ENST00000560523.5_1_15:70964229-70991966:-|nuORF;nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA	ENST00000559156.5_1_15:70968828-70976706:-|nuORF	ENST00000559156.5_1_15:70968828-70976706:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	542.2830810546875	2	542.774731	1083.53491	0.32741	0.00017771	-0.23245	-0.00012617	0.094954	5.1539E-05	542.7742208678553	46.921	0.18861	46.921	46.839	47.028	0					9	6	2	0	0	0	0.25281	1	9387	9387		6.7232	0.96273	1	41316			26392	2873	17596	17762	35356	35356					-0.003517315621365924
YYASFLEVL	9	Unmodified	_YYASFLEVL_					0	0	0		nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J;CTDSPL2-EIF3J|1|fusion;ENST00000558053.1_1_15:44846774-44849853:+|nuORF;ENST00000451571.1_1_9:79607732-79607996:+|nuORF	nc|ENSG00000104131|O75822-3|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	553.263916015625	2	552.784233	1103.55391	0.5986	0.0003309	-0.57311	-0.00031681	0.025491	1.4091E-05	552.7839112693671	91.858	0.64369	91.858	91.707	92.351	0					43	23	2	0	0	0	3.4369E-07	1	23097	23097		133.7	73.312	1	1127500			26393	252	17597	17763	35357	35357					0.006278050089122189
YYASFLEVL	9	Unmodified	_YYASFLEVL_					0	0	0		nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J;CTDSPL2-EIF3J|1|fusion;ENST00000558053.1_1_15:44846774-44849853:+|nuORF;ENST00000451571.1_1_9:79607732-79607996:+|nuORF	nc|ENSG00000104131|O75822-3|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.263916015625	2	552.784233	1103.55391	0.54171	0.00029945	-0.50343	-0.00027829	0.038279	2.116E-05	552.7839836122944	91.879	0.83405	91.916	91.667	92.501	0.03653					44	29	2	0	0	0	0.00047959	1	22937	22937		100.37	44.194	1	932740			26394	252	17597	17763	35358	35358					0.006278050089122189
YYASVNVTRE	10	Unmodified	_YYASVNVTRE_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;nc|ENSG00000141338|O94911-2|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.296875	2	601.296027	1200.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.117	1	25.117	24.617	25.617	0								0	0	0	0.34018	1	2884	2884		0	0	1				26395	3051	17598	17764	35359	35359					-0.014763812245973895
YYATHERTS	9	Unmodified	_YYATHERTS_					0	0	0			REV__ENST00000463708.1_1_3:48642027-48647053:-|nuORF	REV__ENST00000463708.1_1_3:48642027-48647053:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7600708007812	2	564.259445	1126.50434	-0.23114	-0.00013043	-1.9486	-0.0010995	-2.1798	-0.00123	564.258249181904	24.812	0.53843	24.812	24.672	25.211	0					60	39	2	0	0	0	0.3354	1	2817	2817		2.0598	0.21551	1	42273	+		26396	7970	17599	17765	35360	35360					-0.05385509947177525
YYATVNEL	8	Unmodified	_YYATVNEL_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;PCDH15|p.I385Tfs*32|1|0.2|ENSG00000150275|chr10:54195822-54195834|TTTTCATCCAGTA/-|frameshift_variant;nc|ENSG00000150275|Q96QU1-3|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	486.7372131347656	2	486.737283	971.460012	-0.12778	-6.2194E-05	0.53898	0.00026234	0.4112	0.00020015	486.73745956100925	72.027	0.99815	72.027	71.584	72.582	0					61	34	2	0	0	0	0.42348	1	17037	17037		23.148	0	1	190080			26397	3425	17600	17766	35361	35361					-0.026859140933765957
YYATVNEL	8	Unmodified	_YYATVNEL_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;PCDH15|p.I385Tfs*32|1|0.2|ENSG00000150275|chr10:54195822-54195834|TTTTCATCCAGTA/-|frameshift_variant;nc|ENSG00000150275|Q96QU1-3|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	486.737283	971.460012	-0.038034	-1.8512E-05	0.38131	0.0001856	0.34328	0.00016709	486.7373642261601	71.981	1.0002	72.036	71.566	72.566	0.055939	0.0045609	-7.8816E-05	NaN	23.148	58	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161740			26398	3425	17600	17766							-0.026859140933765957
YYAYLPAKL	9	Unmodified	_YYAYLPAKL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.8165893554688	2	551.302593	1100.59063	0.54584	0.00030092	-0.0886	-4.8846E-05	0.45724	0.00025208	551.3026760942462	60.588	0.79961	60.588	60.363	61.162	0					49	28	3	0	0	0	0.16036	2	13504	13504;13556		23.148	12.324	1	181170			26399	2839	17601	17767	35362;35363	35362					0.04436101625469746
YYAYLPAKL	9	Unmodified	_YYAYLPAKL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	551.816162109375	2	551.302593	1100.59063	0.36119	0.00019913	0.013714	7.5604E-06	0.3749	0.00020669	551.3025335451532	60.467	0.57356	60.54	60.306	60.879	0.073421					28	19	3	0	0	0	0.1182	1	13339	13339		28.487	17.663	1	170850			26400	2839	17601	17767	35364	35364					0.04436101625469746
YYCFYPPHCC	10	Unmodified	_YYCFYPPHCC_					0	0	0			REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF	REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.2379760742188	2	648.237755	1294.46096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.06	1	30.06	29.56	30.56	0								0	0	0	0.34018	1	4315	4315		0	0	1		+		26401	11504	17602	17768	35365	35365					-0.17449482311963038
YYCKRLRIL	9	Unmodified	_YYCKRLRIL_					0	0	0			REV__MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|12|1|anti-sense	REV__MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|12|1|anti-sense	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.9057922363281	3	409.905871	1226.69578	-0.14311	-5.8661E-05	-0.067616	-2.7716E-05	-0.21072	-8.6377E-05	409.9058599143163	33.958	1.3822	34.034	33.548	34.931	0.076244					183	59	5	0	0	0	0.31136	1	5443	5443		2.9952	0	1	381400	+		26402	12731	17603	17769	35366	35366					0.09150319550235508
YYCMLEELE	9	Unmodified	_YYCMLEELE_					0	0	0			REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.74755859375	2	596.748676	1191.4828	0.15298	9.1291E-05	-1.6074	-0.00095921	-1.4544	-0.00086792	596.7475421998103	82.107	0.54874	82.129	81.876	82.424	0.021866					51	19	4	0	0	0	0.25209	1	19919	19919		12.532	2.4576	1	513720	+		26403	7822	17604	17770	35367	35367					-0.10528399082431861
YYCQLGLNFYY	11	Unmodified	_YYCQLGLNFYY_					0	0	0			REV__nc|ENSG00000101901|Q9NP73-4|ALG13	REV__nc|ENSG00000101901|Q9NP73-4|ALG13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.6040344238281	3	482.884801	1445.63257	0.0062956	3.04E-06	-0.092795	-4.4809E-05	-0.0865	-4.1769E-05	482.88485459980996	50.132	0.43724	50.205	50.007	50.444	0.07312					19	14	2	0	0	0	0.31097	1	10206	10206		1.3296	0	1	45232	+		26404	8441	17605	17771	35368	35368					-0.07241710748303376
YYDDLKYRYF	10	Unmodified	_YYDDLKYRYF_					0	0	0		ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	482.5627746582031	3	482.562715	1444.66632	0.28071	0.00013546	-0.56609	-0.00027318	-0.28539	-0.00013772	482.8968731751179	55.077	0.52265	55.077	54.918	55.441	0					29	18	2	0	0	0	0.37812	1	11873	11873		14.218	10.102	1	131530			26405	1806	17606	17772	35369	35369					-0.03822965984909388
YYDDLKYRYF	10	Unmodified	_YYDDLKYRYF_					0	0	0		ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	482.89691162109375	3	482.562715	1444.66632	0.27308	0.00013178	0.047881	2.3106E-05	0.32097	0.00015489	482.5626759768695	55.039	0.44875	55.105	54.983	55.432	0.065128					35	17	3	0	0	0	0.37812	2	11702	11702;11756		14.218	10.102	1	157580			26406	1806	17606	17772	35370;35371	35370					-0.03822965984909388
YYDDYRVQL	9	Unmodified	_YYDDYRVQL_					0	0	0		ENST00000580285.1_1_17:62529306-62530930:+|nuORF;ENST00000553956.6_1_17:62527116-62533894:+|nuORF;nc|ENSG00000258890|Q96GE4-2|CEP95;ENSG00000258890|ENST00000556440|CEP95	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	617.7904052734375	2	617.790578	1233.5666	-0.24063	-0.00014866	0.11157	6.8925E-05	-0.12906	-7.9733E-05	617.7905358695436	56.351	0.21622	56.351	56.242	56.458	0					13	7	2	0	0	0	0.095436	1	12268	12268		33.445	3.6043	1	155390			26407	5707	17607	17773	35372	35372					-0.0408378359886683
YYDEIAVPF	9	Unmodified	_YYDEIAVPF_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	558.7669677734375	2	558.76604	1115.51753	0.90389	0.00050506	0.94505	0.00052806	1.8489	0.0010331	558.7664191367983	81.358	0.95696	81.358	81.023	81.98	0					83	32	3	0	0	0	0.17247	1	19997	19997		21.747	7.165	1	485290			26408	1101	17608	17774	35373	35373					-0.035610718878160696
YYDEIINAL	9	Unmodified	_YYDEIINAL_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.2771606445312	2	557.276772	1112.53899	0.39886	0.00022228	-0.2057	-0.00011463	0.19316	0.00010764	557.2766201950226	78.57	0.33588	78.57	78.394	78.73	0					18	11	2	0	0	0	0.16392	1	19029	19029		22.736	3.4793	1	94535			26409	5237	17609	17775	35374	35374					-0.012776868590890444
YYDEIINAL	9	Unmodified	_YYDEIINAL_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	557.276611328125	2	557.276772	1112.53899	0.62467	0.00034812	-0.48219	-0.00026871	0.14249	7.9404E-05	557.2763446220133	78.536	0.3654	78.566	78.346	78.712	0.030159					20	12	2	0	0	0	0.27929	1	18877	18877		9.3831	0	1	142670			26410	5237	17609	17775	35375	35375					-0.012776868590890444
YYDFSVNYK	9	Unmodified	_YYDFSVNYK_					0	0	0			REV__ENSG00000165996|ENST00000361271|HACD1	REV__ENSG00000165996|ENST00000361271|HACD1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8023681640625	2	599.774396	1197.53424	0.30049	0.00018023	-1.4534	-0.0008717	-1.1529	-0.00069147	599.773586394567	73.528	0.46428	73.58	73.441	73.906	0.052574					32	17	3	0	0	0	0.21603	1	17344	17344		20.454	4.6064	1	195800	+		26411	10056	17610	17776	35376	35376					-0.05662571001857941
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	625.27880859375	2	625.279846	1248.54514	-0.37123	-0.00023212	0.69805	0.00043648	0.32682	0.00020436	625.2801989922702	44.026	0.66947	44.026	43.748	44.418	0					39	22	3	0	0	0	0.081383	2	8498	8498;8558		36.506	13.77	1	122860			26412	1848	17611	17777	35377;35378	35377					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	625.2802124023438	2	625.279846	1248.54514	-0.052953	-3.311E-05	0.19022	0.00011894	0.13726	8.5828E-05	625.2801262638168	43.928	0.48038	44.017	43.793	44.274	0.088921					35	16	3	0	0	0	0.17428	1	8325	8325		21.537	4.4241	1	124260			26413	1848	17611	17777	35379	35379					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.18896484375	3	417.188989	1248.54514	-0.17297	-7.216E-05	0.21683	9.0458E-05	0.04386	1.8298E-05	417.18901253833013	43.921	1.2948	44.01	43.767	45.062	0.088924					96	46	4	0	0	0	0.22821	1	8374	8374		19.362	4.1135	1	694320			26414	1848	17611	17777	35380	35380					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	417.188989	1248.54514	0.038543	1.608E-05	-0.25196	-0.00010511	-0.21341	-8.9034E-05	417.18880440367786	44.013	1.4649	44.013	43.773	45.238	0	0.0011908	-0.00034881	NaN	19.362	116	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606510			26415	1848	17611	17777							-0.06919168627587169
YYDLQEVLL	9	Unmodified	_YYDLQEVLL_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.321044921875	2	578.300247	1154.58594	0.14871	8.5997E-05	1.3328	0.00077075	1.4815	0.00085674	578.3003562424983	86.584	0.47678	86.584	86.331	86.808	0					41	17	3	0	0	0	0.17305	1	21465	21465		31.268	8.1199	1	532280			26416	1552	17612	17778	35381	35381					0.01483172692064727
YYDLQEVLL	9	Unmodified	_YYDLQEVLL_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.3206787109375	2	578.300247	1154.58594	0.35948	0.00020789	0.91158	0.00052716	1.2711	0.00073505	578.3007556566453	86.518	0.41105	86.546	86.329	86.74	0.027573					31	18	2	0	0	0	0.07372	1	21292	21292		38.176	10.547	1	344990			26417	1552	17612	17778	35382	35382					0.01483172692064727
YYDNKYIDR	9	Unmodified	_YYDNKYIDR_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	417.18896484375	3	417.199777	1248.5775	-0.17392	-7.2561E-05	2.4315	0.0010144	2.2576	0.00094187	417.20075116752156	43.955	0.66211	44.044	43.818	44.48	0.088924					39	22	3	0	0	0	0.31389	1	8374	8374		4.897	1.31	1	86785	+		26418	8041	17613	17779	35383	35383					-0.036843812245933805
YYDNKYIDR	9	Unmodified	_YYDNKYIDR_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	417.199777	1248.5775	0.046354	1.9339E-05	2.8911	0.0012062	2.9374	0.0012255	417.20086179666595	44.018	0.87204	44.018	43.572	44.444	0	-0.012853	0.00019678	NaN	4.897	41	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62548	+		26419	8041	17613	17779							-0.036843812245933805
YYDNKYIDR	9	Unmodified	_YYDNKYIDR_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	417.199777	1248.5775	-0.17392	-7.2561E-05	2.4315	0.0010144	2.2576	0.00094187	417.20075116752156	43.955	0.66211	44.044	43.818	44.48	0.088924	0.012853	-0.00037839	NaN	4.897	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86785	+		26420	8041	17613	17779							-0.036843812245933805
YYDPHQATF	9	Unmodified	_YYDPHQATF_					0	0	0		nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-3|PCNX1	nc|ENSG00000100731|Q96RV3-3|PCNX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.2500610351562	2	571.251089	1140.48762	-0.16791	-9.592E-05	0.090768	5.1851E-05	-0.077145	-4.4069E-05	571.2509246384892	43.961	0.41386	43.961	43.829	44.243	0					29	13	3	0	0	0	0.14444	1	8496	8496		24.991	14.917	1	87856			26421	1216	17614	17780	35384	35384					-0.07700010833150372
YYDPHQATF	9	Unmodified	_YYDPHQATF_					0	0	0		nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-3|PCNX1	nc|ENSG00000100731|Q96RV3-3|PCNX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.2505493164062	2	571.251089	1140.48762	-0.023912	-1.366E-05	0.51893	0.00029644	0.49502	0.00028278	571.2509654988426	43.889	0.34155	43.977	43.818	44.16	0.088924					22	11	3	0	0	0	0.12515	1	8341	8341		27.223	17.149	1	75796			26422	1216	17614	17780	35385	35385					-0.07700010833150372
YYDRVHVVF	9	Unmodified	_YYDRVHVVF_					0	0	0		ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENST00000472127.1_1_3:42672642-42674322:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.3045654296875	2	599.306198	1196.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.33	1	33.404	32.904	33.904	0.074322								0	0	0	0.2927	1	5167	5167		0.52476	0.066424	1				26423	6680	17615	17781	35386	35386					0.0074083422589410475
YYDVAKILI	9	Unmodified	_YYDVAKILI_					0	0	0		ENST00000540578.6_1_18:9182415-9235682:+|nuORF;ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ENST00000540578.6_1_18:9182415-9235682:+|nuORF	ENST00000540578.6_1_18:9182415-9235682:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	549.315673828125	2	549.3157	1096.61685	0.47249	0.00025955	-1.2451	-0.00068396	-0.77262	-0.00042441	549.3151882904727	71.349	0.42119	71.349	71.109	71.53	0					34	14	4	0	0	0	0.056368	1	16804	16804		41.956	19.219	1	218570			26424	35	17616	17782	35387	35387					0.07240370796944262
YYDVAKILI	9	Unmodified	_YYDVAKILI_					0	0	0		ENST00000540578.6_1_18:9182415-9235682:+|nuORF;ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ENST00000540578.6_1_18:9182415-9235682:+|nuORF	ENST00000540578.6_1_18:9182415-9235682:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	549.3157	1096.61685	0.54218	0.00029783	-0.74027	-0.00040664	-0.19809	-0.00010882	549.3153448209038	71.248	0.46205	71.306	71.056	71.518	0.058578	-0.021458	0.00021269	NaN	41.956	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255530			26425	35	17616	17782							0.07240370796944262
YYDVAKQLL	9	Unmodified	_YYDVAKQLL_					0	0	0		ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF;ANKRD11|p.T278Hfs*71|1|0.25|ENSG00000167522|chr16:89286099-89286100|-/G|frameshift_variant;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000378332.6_1_16:89353515-89371640:-|nuORF	ENST00000378332.6_1_16:89353515-89371640:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	556.8031616210938	2	556.802957	1111.59136	0.64536	0.00035934	0.31113	0.00017324	0.95649	0.00053258	556.8030669986033	60.212	0.43778	60.212	60.069	60.507	0					31	15	3	0	0	0	0.023873	1	13435	13435		55.503	35.049	1	168440			26426	34	17617	17783	35388	35388					0.040028962745282115
YYDVAKQLL	9	Unmodified	_YYDVAKQLL_					0	0	0		ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF;ANKRD11|p.T278Hfs*71|1|0.25|ENSG00000167522|chr16:89286099-89286100|-/G|frameshift_variant;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000378332.6_1_16:89353515-89371640:-|nuORF	ENST00000378332.6_1_16:89353515-89371640:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.8036499023438	2	556.802957	1111.59136	0.43058	0.00023975	0.27815	0.00015488	0.70873	0.00039462	556.8030417322309	60.108	0.44808	60.18	60.044	60.492	0.072342					29	15	3	0	0	0	0.056368	1	13264	13264		41.956	28.05	1	158190			26427	34	17617	17783	35389	35389					0.040028962745282115
YYDYNFINF	9	Unmodified	_YYDYNFINF_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	630.2759399414062	2	629.774396	1257.53424	0.085775	5.4019E-05	0.34671	0.00021835	0.43249	0.00027237	629.7745246557971	86.15	0.45242	86.15	85.985	86.438	0					45	17	3	0	0	0	0.081383	1	21378	21378		36.506	21.258	1	300190			26428	2790	17618	17784	35390	35390					-0.08422571001869983
YYDYNFINF	9	Unmodified	_YYDYNFINF_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	629.7741088867188	2	629.774396	1257.53424	0.40169	0.00025297	-0.31312	-0.0001972	0.088564	5.5775E-05	629.7741288278073	86.14	0.55125	86.165	85.954	86.506	0.025169					46	20	3	0	0	0	0.029167	1	21174	21174		89.401	56.615	1	271550			26429	2790	17618	17784	35391	35391					-0.08422571001869983
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-4|IL32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.267333984375	2	604.266936	1206.51932	-0.1604	-9.6926E-05	0.25499	0.00015408	0.094583	5.7153E-05	604.2671967404339	40.863	3.5842	40.863	40.505	44.09	0					298	127	5	0	0	0	1.5492E-17	15	7553	7503;7553;7597;7634;7677;7722;7765;7821;7869;7915;7965;8019;8104;8376;8445		201.57	151.64	1	4652500			26430	400	17619	17785	35392;35393;35394;35395;35396;35397;35398;35399;35400;35401;35402;35403;35404;35405;35406	35393					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-4|IL32	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	604.2672729492188	2	604.266936	1206.51932	0.0653	3.9459E-05	0.17027	0.00010289	0.23557	0.00014235	604.2671235065307	40.799	2.7297	40.889	40.569	43.299	0.089645					275	105	6	0	0	0	8.600400000000001E-24	15	7394	7354;7394;7440;7482;7525;7574;7620;7670;7717;7765;7815;7867;7926;7990;8119		216.57	157.91	1	4163900			26431	400	17619	17785	35407;35408;35409;35410;35411;35412;35413;35414;35415;35416;35417;35418;35419;35420;35421	35408					-0.07568062869859205
YYEGSKYC	8	Unmodified	_YYEGSKYC_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	506.7055969238281	2	506.707668	1011.40078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.003	1	74.052	73.552	74.552	0.048546								0	0	0	0.38822	1	17474	17474		2.8892	0	1		+		26432	10047	17620	17786	35422	35422					-0.10446133379207367
YYEHEFVEL	9	Unmodified	_YYEHEFVEL_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	614.780029296875	2	614.779679	1227.5448	-0.50453	-0.00031017	0.24953	0.0001534	-0.255	-0.00015677	614.7797060487301	58.709	0.61694	58.709	58.445	59.062	0					48	21	4	0	0	0	0.12515	1	12952	12952		36.127	25.328	1	349690			26433	4155	17621	17787	35423	35423					-0.05986588347423094
YYEHEFVEL	9	Unmodified	_YYEHEFVEL_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	614.779679	1227.5448	-0.13314	-8.1853E-05	0.14155	8.7022E-05	0.0084088	5.1696E-06	614.7796240718044	58.591	0.52287	58.661	58.446	58.969	0.070477	-0.023792	-8.1967E-05	NaN	36.127	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317430			26434	4155	17621	17787							-0.05986588347423094
YYEILKIFI	9	Unmodified	_YYEILKIFI_					0	0	0		tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.32666015625	2	601.347	1200.67945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.31	1	54.375	53.875	54.875	0.065128								0	0	0	0.2722	1	11488	11488		4.756	1.1595	1				26435	13709	17622	17788	35424	35424					0.08713516865122983
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8731384277344	3	421.873001	1262.59717	0.54957	0.00023185	-0.070429	-2.9712E-05	0.47914	0.00020213	421.8729047180825	47.16	2.5389	47.16	46.744	49.283	0					240	88	5	0	0	0	0.010033	6	9474	9426;9474;9517;9565;9619;9683		67.081	47.719	1	2215000			26436	2575	17623	17789	35425;35426;35427;35428;35429;35430	35426					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.3055419921875	2	632.305864	1262.59717	0.25496	0.00016121	0.033743	2.1336E-05	0.2887	0.00018255	632.3058087581194	47.164	0.85946	47.164	46.935	47.795	0					74	28	4	0	0	0	0.0044975	4	9433	9433;9485;9549;9601		89.401	68.947	1	312780			26437	2575	17623	17789	35431;35432;35433;35434	35431					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.87322998046875	3	421.873001	1262.59717	0.20077	8.4702E-05	0.28162	0.00011881	0.4824	0.00020351	421.87306315163517	47.077	2.2671	47.16	46.815	49.082	0.083096					215	84	6	0	0	0	0.029489	8	9292	9251;9292;9335;9376;9421;9463;9516;9639		51.488	32.126	1	2664600			26438	2575	17623	17789	35435;35436;35437;35438;35439;35440;35441;35442	35436					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	ENSG00000132470|ENST00000200181|ITGB4	ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.3064575195312	2	632.305864	1262.59717	0.34024	0.00021513	0.29585	0.00018707	0.63609	0.0004022	632.3058532891374	47.064	0.63979	47.147	46.937	47.577	0.083092					70	24	4	0	0	0	0.0043678	3	9279	9279;9323;9374		114.19	83.55	1	450500			26439	2575	17623	17789	35443;35444;35445	35443					-0.023620052138085157
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	608.7985229492188	2	608.797872	1215.58119	0.6404	0.00038988	0.093328	5.6818E-05	0.73373	0.00044669	608.7978906703643	53.972	0.63255	53.972	53.739	54.371	0					63	22	4	0	0	0	0.0043231	2	11510	11510;11558		97.741	64.955	1	858410			26440	3040;5227	17624	17790	35446;35447	35446					-0.017977114506948055
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	608.7987670898438	2	608.797872	1215.58119	0.70816	0.00043112	-0.068102	-4.146E-05	0.64006	0.00038966	608.7978461710969	53.925	0.61021	53.99	53.789	54.399	0.065128					59	22	4	0	0	0	0.0045688	2	11359	11359;11400		88.364	62.096	1	801030			26441	3040;5227	17624	17790	35448;35449	35448					-0.017977114506948055
YYELKIAF	8	Unmodified	_YYELKIAF_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;nc|ENSG00000068615|Q9H902-2|REEP1;nc|ENSG00000068615|Q9H902|REEP1;nc|ENSG00000068615|Q9H902-3|REEP1;ENSG00000165476|ENST00000373758|REEP3;ENSG00000068615|ENST00000538924|REEP1	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	523.2897338867188	2	523.781493	1045.54843	0.51257	0.00026847	-0.75566	-0.0003958	-0.24309	-0.00012733	523.7807209546417	97.377	0.36169	97.377	97.077	97.438	0					26	15	3	0	0	0	0.53557	1	24737	24737		4.3292	0	1	93465			26442	731	17625	17791	35450	35450					0.027481262170795162
YYELYMLW	8	Unmodified	_YYELYMLW_					0	0	0			REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF	REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7728881835938	2	590.772811	1179.53107	0.098778	5.8356E-05	0.018807	1.1111E-05	0.11759	6.9466E-05	590.7728728007079	40.051	1.1925	40.139	39.608	40.8	0.088566					62	44	2	0	0	0	0.54081	1	7161	7161		0.79363	0.19213	1	43976	+		26443	12266	17626	17792	35451	35451					-0.05151537380220361
YYEPTLLILF	10	Unmodified	_YYEPTLLILF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.8525390625	2	636.34974	1270.68493	-0.15859	-0.00010092	1.0508	0.0006687	0.89224	0.00056778	636.3505785702528	107.24	0.25453	107.24	107.09	107.35	0					31	21	2	0	0	0	0.24016	1	27689	27689		29.082	4.4077	1	32592			26444	774	17627	17793	35452	35452					0.060411956569623726
YYEPTLLILF	10	Unmodified	_YYEPTLLILF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	636.34974	1270.68493	0.23524	0.0001497	0.35099	0.00022335	0.58623	0.00037305	636.3499436992046	107.22	0.20647	107.25	107.08	107.29	0.025711	0.0032332	-0.00030039	NaN	29.082	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182280			26445	774	17627	17793							0.060411956569623726
YYEYNHDLF	9	Unmodified	_YYEYNHDLF_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.2696533203125	2	632.269478	1262.5244	0.21075	0.00013325	0.32872	0.00020784	0.53947	0.00034109	632.2696869486638	57.162	1.3008	57.162	56.916	58.217	0					127	46	4	0	0	0	0.0042616	5	12503	12458;12503;12572;12657;12694		100.09	77.354	1	1425800			26446	3473	17628	17794	35453;35454;35455;35456;35457	35454					-0.09635759007255729
YYEYNHDLF	9	Unmodified	_YYEYNHDLF_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.269775390625	2	632.269478	1262.5244	0.3903	0.00024677	0.28185	0.00017821	0.67215	0.00042498	632.2696103673993	57.084	1.274	57.152	56.886	58.16	0.068375					109	48	5	0	0	0	0.0044564	7	12301	12294;12301;12350;12430;12460;12465;12526		92.653	73.396	1	1390300			26447	3473	17628	17794	35458;35459;35460;35461;35462;35463;35464	35459					-0.09635759007255729
YYEYVTNFT	9	Unmodified	_YYEYVTNFT_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8020629882812	2	600.266404	1198.51826	0.30062	0.00018045	4.2255	0.0025365	4.5262	0.0027169	600.2690132924906	74.14	0.36418	74.14	73.977	74.341	0					23	13	2	0	0	0	0.24791	1	17661	17661		10.074	3.8681	1	212960	+		26448	12819	17629	17795	35465	35465					-0.0730627723876296
YYEYVTNFT	9	Unmodified	_YYEYVTNFT_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8018188476562	2	600.266404	1198.51826	0.47683	0.00028622	3.5141	0.0021094	3.9909	0.0023956	600.2689088781389	74.118	0.3526	74.167	74.016	74.369	0.048546					27	12	3	0	0	0	0.24791	1	17496	17496		10.074	2.7847	1	235090	+		26449	12819	17629	17795	35466	35466					-0.0730627723876296
YYFALLWL	8	Unmodified	_YYFALLWL_					0	0	0			REV__ENST00000480712.5_1_9:97869762-97897630:-|nuORF	REV__ENST00000480712.5_1_9:97869762-97897630:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.792236328125	2	544.794404	1087.57425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.73	1	118.75	118.25	119.25	0.013062								0	0	0	0.38822	1	29900	29900		0.79363	0.10326	1		+		26450	9799	17630	17796	35467	35467					0.033970204593970266
YYFAVKTLI	9	Unmodified	_YYFAVKTLI_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	559.318603515625	2	559.318243	1116.62193	0.60632	0.00033913	-0.039585	-2.2141E-05	0.56674	0.00031699	559.31814319666	69.488	0.55379	69.488	69.379	69.933	0					39	18	3	0	0	0	0.010235	2	16259	16259;16310		66.457	40.189	1	323210			26451	762	17631	17797	35468;35469	35468					0.06828674659573153
YYFAVKTLI	9	Unmodified	_YYFAVKTLI_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.3184814453125	2	559.318243	1116.62193	0.43361	0.00024252	-0.10303	-5.7624E-05	0.33058	0.0001849	559.3182039945214	69.482	0.55948	69.544	69.358	69.917	0.062126					39	19	3	0	0	0	0.012041	2	16089	16089;16160		63.961	42.214	1	319950			26452	762	17631	17797	35470;35471	35470					0.06828674659573153
YYFDSYAHF	9	Unmodified	_YYFDSYAHF_					0	0	0		ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8	ENST00000261252.4_1_12:3649876-3661973:+|nuORF	ENST00000261252.4_1_12:3649876-3661973:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	606.7537231445312	2	606.753464	1211.49238	1.0057	0.00061023	-0.28752	-0.00017446	0.71821	0.00043578	606.7530165063272	65.837	0.60773	65.837	65.616	66.223	0					27	20	2	0	0	0	0.05573	2	15147	15147;15196		42.095	25.152	1	230870			26453	1693	17632	17798	35472;35473	35472					-0.104911266903855
YYFDSYAHF	9	Unmodified	_YYFDSYAHF_					0	0	0		ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8	ENST00000261252.4_1_12:3649876-3661973:+|nuORF	ENST00000261252.4_1_12:3649876-3661973:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	606.7538452148438	2	606.753464	1211.49238	0.93316	0.0005662	0.064618	3.9207E-05	0.99778	0.0006054	606.7531213275578	65.825	0.76058	65.892	65.638	66.399	0.066872					41	28	3	0	0	0	0.16036	1	15001	15001		23.148	10.617	1	273350			26454	1693	17632	17798	35474	35474					-0.104911266903855
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.3193969726562	2	648.318971	1294.62339	0.42198	0.00027358	-0.23044	-0.0001494	0.19153	0.00012418	648.3188585426795	62.8	2.1163	62.8	62.547	64.664	0					185	76	3	0	0	0	2.6416E-23	5	14306	14179;14219;14262;14306;14351		203.64	157.9	1	9793200			26455	1207	17633	17799	35475;35476;35477;35478;35479	35478					-0.012137360423594146
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	648.7841186523438	2	648.318971	1294.62339	0.57559	0.00037317	-0.62195	-0.00040322	-0.046353	-3.0052E-05	648.3186097754661	65.017	0.88531	65.017	64.664	65.549	0					42	32	2	0	0	0	0.23005	1	14822	14822		49.527	35.621	1	163430			26456	1207	17633	17799	35480	35480					-0.012137360423594146
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.319091796875	2	648.318971	1294.62339	0.25293	0.00016398	-0.11525	-7.4717E-05	0.13768	8.926E-05	648.3189334346034	62.718	2.2485	62.79	62.503	64.752	0.072701					150	83	3	0	0	0	1.4852E-23	4	14055	14005;14055;14102;14143		208.35	134.15	1	6034100			26457	1207	17633	17799	35481;35482;35483;35484	35482					-0.012137360423594146
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.7828369140625	2	648.318971	1294.62339	0.44684	0.0002897	-0.35634	-0.00023102	0.090498	5.8671E-05	648.3187695108145	66.037	0.33995	66.103	65.999	66.339	0.066872					16	12	2	0	0	0	0.31595	1	15033	15033		11.495	2.1116	1	67104			26458	1207	17633	17799	35485	35485					-0.012137360423594146
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	648.7840576171875	2	648.318971	1294.62339	0.32008	0.00020751	0.20062	0.00013007	0.5207	0.00033758	648.3187606917083	65.108	0.32507	65.177	64.931	65.257	0.068909					15	12	2	0	0	0	0.27035	1	14755	14755		35.612	26.229	1	107460			26459	1207	17633	17799	35486	35486					-0.012137360423594146
YYFIAAGNEE	10	Unmodified	_YYFIAAGNEE_					0	0	0		nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23	nc|ENSG00000107736|Q9H251-9|CDH23	nc|ENSG00000107736|Q9H251-9|CDH23	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.8182983398438	2	588.764029	1175.5135	0.57355	0.00033768	1.1804	0.000695	1.754	0.0010327	588.7648681840261	94.179	0.27982	94.179	94.063	94.343	0					23	13	2	0	0	0	0.43972	1	23809	23809		6.7232	1.4925	1	68475			26460	1563	17634	17800	35487	35487					-0.06723161381501086
YYFKANVFF	9	Unmodified	_YYFKANVFF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.80078125	2	599.800217	1197.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.982	1	71.982	71.482	72.482	0								0	0	0	0.071558	1	17010	17010		42.095	20.348	1				26461	1695	17635	17801	35488	35488					-0.00500782517292464
YYFKIAVAL	9	Unmodified	_YYFKIAVAL_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	544.313232421875	2	544.312961	1086.61137	0.046941	2.5551E-05	0.51374	0.00027964	0.56069	0.00030519	544.3129904680998	73.099	0.43049	73.099	72.853	73.284	0					29	14	3	0	0	0	0.1182	1	17366	17366		28.487	11.374	1	290580			26462	4583;805	17636	17802	35489	35489					0.07152692005138306
YYFKIAVAL	9	Unmodified	_YYFKIAVAL_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7927856445312	2	544.312961	1086.61137	0.17396	9.4687E-05	0.55941	0.00030449	0.73336	0.00039918	544.3130986767276	73.026	0.39725	73.079	72.897	73.294	0.052574					26	13	3	0	0	0	0.082308	1	17169	17169		48.346	34.838	1	247290			26463	4583;805	17636	17802	35490	35490					0.07152692005138306
YYFKIQARN	9	Unmodified	_YYFKIQARN_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.820068359375	2	601.819473	1201.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.689	1	28.689	28.189	29.189	0								0	0	0	0.29525	1	3913	3913		0	0	1				26464	708	17637	17803	35491	35491					0.03164523117243334
YYFLFAPTL	9	Unmodified	_YYFLFAPTL_					0	0	0		ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000524965.5_1_8:145540848-145542370:-|nuORF	ENST00000524965.5_1_8:145540848-145542370:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.7977905273438	2	567.797143	1133.57973	0.48896	0.00027763	4.0224	0.0022839	4.5113	0.0025615	567.7971162931663	98.876	0.3297	98.918	98.782	99.112	0.041931					28	20	2	0	0	0	0.16036	1	25044	25044		23.148	14.993	1	173170			26465	5003	17638	17804	35492	35492					0.01828699251177568
YYFLFNIE	8	Unmodified	_YYFLFNIE_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7575073242188	2	554.771126	1107.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.982	1	25.982	25.482	26.482	0								0	0	0	0.38822	1	3131	3131		2.3027	0.65011	1		+		26466	9694	17639	17805	35493	35493					-0.021764641625850345
YYFMFLYVL	9	Unmodified	_YYFMFLYVL_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	629.8145141601562	2	629.814479	1257.6144	0.10311	6.4938E-05	-0.39285	-0.00024742	-0.28974	-0.00018249	629.8144078890685	78.698	0.62091	78.698	78.394	79.015	0					56	20	4	0	0	0	0.237	1	19076	19076		14.582	8.3759	1	825900			26467	3857	17640	17806	35494	35494					-0.004098009323570295
YYFMFLYVL	9	Unmodified	_YYFMFLYVL_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	629.814479	1257.6144	0.37888	0.00023862	-0.4001	-0.00025199	-0.021228	-1.337E-05	629.8145270180619	78.611	0.61564	78.641	78.374	78.99	0.030159	-0.028311	-3.8095E-06	NaN	20.871	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	639920			26468	3857	17640	17806							-0.004098009323570295
YYFPVKNVI	9	Unmodified	_YYFPVKNVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.81591796875	2	571.815867	1141.61718	0.54868	0.00031374	-0.27285	-0.00015602	0.27583	0.00015772	571.8156257057952	64.856	0.91482	64.856	64.664	65.578	0					85	33	4	0	0	0	0.0099477	2	14828	14814;14828		67.344	50.402	1	1158700			26469	5191	17641	17807	35495;35496	35496					0.052037905167935605
YYFPVKNVI	9	Unmodified	_YYFPVKNVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.8160400390625	2	571.815867	1141.61718	0.42829	0.0002449	-0.17544	-0.00010032	0.25285	0.00014458	571.8156682954026	64.779	0.9132	64.848	64.632	65.545	0.068916					76	34	4	0	0	0	0.0065046	3	14667	14647;14667;14710		77.984	59.611	1	1297100			26470	5191	17641	17807	35497;35498;35499	35498					0.052037905167935605
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.3134155273438	2	605.313158	1208.61176	0.61893	0.00037465	-0.038689	-2.3419E-05	0.58025	0.00035123	605.3130881347524	76.381	1.2519	76.381	76.137	77.389	0					150	51	4	0	0	0	0.00041987	8	18366	18318;18366;18407;18437;18453;18505;18521;18558		133.05	63.947	1	11802000			26471	440	17642	17808	35500;35501;35502;35503;35504;35505;35506;35507	35501					0.01580066934320712
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	604.8217163085938	2	605.313158	1208.61176	0.54871	0.00033214	-1.2741	-0.00077122	-0.72537	-0.00043908	605.8140183179693	78.055	0.91245	78.055	77.655	78.568	0					39	30	2	0	0	0	0.21622	1	18782	18782		21.537	5.6898	1	115850			26472	440	17642	17808	35508	35508					0.01580066934320712
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3134155273438	2	605.313158	1208.61176	0.72035	0.00043604	-0.20811	-0.00012597	0.51224	0.00031006	605.3130307046539	76.335	1.0844	76.374	76.149	77.233	0.03923					139	40	4	0	0	0	0.00041987	7	18196	18150;18196;18238;18284;18326;18333;18378		133.05	63.947	1	14048000			26473	440	17642	17808	35509;35510;35511;35512;35513;35514;35515	35510					0.01580066934320712
YYFSLSSL	8	Unmodified	_YYFSLSSL_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	490.242431640625	2	490.242201	978.469849	0.13319	6.5295E-05	-0.61163	-0.00029985	-0.47844	-0.00023455	490.2418093870954	58.712	1.1833	58.783	58.387	59.571	0.070477					50	43	2	0	0	0	0.30669	1	12784	12784		34.102	2.8341	1	181040			26474	1659	17643	17809	35516	35516					-0.020247260879841633
YYFSTISSSF	10	Unmodified	_YYFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.2747802734375	2	601.274229	1200.53391	0.48845	0.00029369	-0.082402	-4.9546E-05	0.40605	0.00024415	601.2741594958422	76.927	0.36147	76.967	76.794	77.156	0.03923					21	12	2	0	0	0	0.063851	1	18380	18380		53.833	31.175	1	195300			26475	5648	17644	17810	35517	35517					-0.058339907217032305
YYFSTISSSF	10	Unmodified	_YYFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	601.274229	1200.53391	0.42018	0.00025265	-0.45482	-0.00027347	-0.034639	-2.0828E-05	601.2737603761938	76.961	0.47358	76.961	76.73	77.204	0	-0.0030195	-0.00032447	NaN	53.833	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220500			26476	5648	17644	17810							-0.058339907217032305
YYGDVIWVI	9	Unmodified	_YYGDVIWVI_					0	0	0		ENST00000453101.1_1_2:106961501-106961627:+|nuORF;ENSG00000196821|ENST00000374023|ILRUN	ENST00000453101.1_1_2:106961501-106961627:+|nuORF	ENST00000453101.1_1_2:106961501-106961627:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.2924194335938	2	564.292225	1126.5699	0.32614	0.00018404	-0.041186	-2.3241E-05	0.28495	0.0001608	564.292083387602	94.7	0.80171	94.7	94.451	95.253	0					55	34	2	0	0	0	0.17247	2	23920	23920;23974		21.747	10.106	1	429130			26477	5250	17645	17811	35518;35519	35518					0.011675112458078729
YYGDVIWVI	9	Unmodified	_YYGDVIWVI_					0	0	0		ENST00000453101.1_1_2:106961501-106961627:+|nuORF;ENSG00000196821|ENST00000374023|ILRUN	ENST00000453101.1_1_2:106961501-106961627:+|nuORF	ENST00000453101.1_1_2:106961501-106961627:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	564.2920532226562	2	564.292225	1126.5699	0.28654	0.00016169	-0.38469	-0.00021708	-0.098151	-5.5386E-05	564.2919100850706	94.665	0.7157	94.704	94.477	95.193	0.038094					47	29	2	0	0	0	0.17247	1	23775	23775		21.747	10.106	1	370510			26478	5250	17645	17811	35520	35520					0.011675112458078729
YYGGQWFLF	9	Unmodified	_YYGGQWFLF_					0	0	0		ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENST00000455359.5_2_22:35653519-35659991:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	590.77685546875	2	590.776742	1179.53893	0.60021	0.00035459	-0.27714	-0.00016373	0.32307	0.00019086	590.7764259788161	97.303	0.36169	97.303	97.077	97.438	0					39	15	3	0	0	0	0.083504	3	24735	24690;24708;24735		36.044	14.581	1	300730			26479	6583	17646	17812	35521;35522;35523	35523					-0.04365642068432862
YYGGQWFLF	9	Unmodified	_YYGGQWFLF_					0	0	0		ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENST00000455359.5_2_22:35653519-35659991:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	590.7769165039062	2	590.776742	1179.53893	0.6726	0.00039735	-0.27007	-0.00015955	0.40252	0.0002378	590.7763460373045	97.292	0.57018	97.333	97.112	97.682	0.040848					72	27	4	0	0	0	0.083504	3	24588	24545;24588;24617		36.044	20.197	1	259690			26480	6583	17646	17812	35524;35525;35526	35525					-0.04365642068432862
YYGNINFF	8	Unmodified	_YYGNINFF_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	519.8209838867188	2	519.239993	1036.46543	0.28913	0.00015013	0.73543	0.00038186	1.0246	0.00053199	519.7421144101222	78.941	0.20179	78.941	78.846	79.047	0					9	6	2	0	0	0	0.35759	1	19151	19151		13.508	3.3245	1	52030			26481	1203	17647	17813	35527	35527					-0.051341905108984065
YYGNINFF	8	Unmodified	_YYGNINFF_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	519.239993	1036.46543	0.28896	0.00015004	0.30024	0.00015589	0.5892	0.00030593	519.2399545238059	78.867	0.28355	78.897	78.818	79.101	0.030159	-0.021743	-0.0001229	NaN	13.508	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50734			26482	1203	17647	17813							-0.051341905108984065
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.8192749023438	2	600.818607	1199.62266	0.53978	0.00032431	0.60279	0.00036217	1.1426	0.00068648	600.8189225948865	99.717	1.388	99.717	99.354	100.74	0					249	77	4	0	0	0	2.9509E-16	8	25453	25373;25413;25453;25491;25540;25585;25627;25670		185.05	128.87	1	12468000			26483	3180	17648	17814	35528;35529;35530;35531;35532;35533;35534;35535	35530					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.3213500976562	2	600.818607	1199.62266	0.4582	0.0002753	1.2806	0.00076941	1.7388	0.0010447	601.3209928094344	100.85	0.70187	100.85	100.72	101.42	0					84	40	3	0	0	0	0.32016	2	25872	25872;25941		20.415	2.9719	1	152960			26484	3180	17648	17814	35536;35537	35536					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.8192749023438	2	600.818607	1199.62266	0.40455	0.00024306	-0.16952	-0.00010185	0.23503	0.00014121	600.8183023441387	101.62	0.41699	101.62	101.42	101.84	0					40	29	2	0	0	0	0.43214	1	26008	26008		8.1555	0.54658	1	50905			26485	3180	17648	17814	35538	35538					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8191528320312	2	600.818607	1199.62266	0.5804	0.00034871	0.56528	0.00033963	1.1457	0.00068835	600.8188954861564	99.658	0.98824	99.7	99.369	100.36	0.042831					237	63	5	0	0	0	1.3404E-08	7	25325	25197;25238;25278;25325;25367;25412;25457		157.8	110.05	1	12508000			26486	3180	17648	17814	35539;35540;35541;35542;35543;35544;35545	35542					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.81884765625	2	600.818607	1199.62266	0.54849	0.00032954	0.29489	0.00017718	0.84338	0.00050672	600.8184553826206	100.36	0.75426	100.4	100.32	101.07	0.042839					100	45	3	0	0	0	0.023231	2	25502	25502;25541		65.235	38.967	1	245780			26487	3180	17648	17814	35546;35547	35546					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8196411132812	2	600.818607	1199.62266	0.52214	0.00031371	0.12174	7.3142E-05	0.64388	0.00038686	600.818489612755	101.11	0.39119	101.16	101.07	101.46	0.042831					43	22	2	0	0	0	0.43214	1	25760	25760		8.1555	4.559	1	63174			26488	3180	17648	17814	35548	35548					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	600.8189697265625	2	600.818607	1199.62266	0.507	0.00030462	0.16028	9.6302E-05	0.66729	0.00040092	600.8185676552946	101.46	0.42303	101.5	101.46	101.89	0.042656					50	33	2	0	0	0	0.39662	1	25842	25842		12.241	6.5088	1	66041			26489	3180	17648	17814	35549	35549					0.03083469308603526
YYGQGFPSF	9	Unmodified	_YYGQGFPSF_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	533.2393188476562	2	533.23745	1064.46035	0.01789	9.5395E-06	0.88608	0.00047249	0.90397	0.00048203	533.23791371338	72.455	0.328	72.455	72.228	72.556	0					17	10	2	0	0	0	0.19398	1	17136	17136		19.257	2.3147	1	84054			26490	2674	17649	17815	35550	35550					-0.06930494373523288
YYGRGSPRSM	10	Unmodified	_YYGRGSPRSM_					0	0	0			REV__nc|ENSG00000293134|O15428|PIN1P1	REV__nc|ENSG00000293134|O15428|PIN1P1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.7742309570312	2	587.277115	1172.53968	0.75205	0.00044166	-4.112	-0.0024149	-3.36	-0.0019732	587.2745157249415	54.074	0.71627	54.074	53.783	54.499	0					33	26	2	0	0	0	0.31643	1	11646	11646		9.3831	5.7866	1	74607	+		26491	12925	17650	17816	35551	35551					-0.03969170691038926
YYGSPSITTN	10	Unmodified	_YYGSPSITTN_					0	0	0			REV__ENST00000469381.1_1_16:85696561-85697128:+|nuORF	REV__ENST00000469381.1_1_16:85696561-85697128:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	551.2841186523438	2	551.756204	1101.49785	0.27545	0.00015198	-1.7607	-0.00097148	-1.4852	-0.00081949	551.7555614587022	39.02	0.19317	39.02	38.89	39.083	0					10	6	2	0	0	0	0.31731	1	6997	6997		6.2058	0.47393	1	20594	+		26492	12020	17651	17817	35552	35552					-0.0488344789855546
YYHAQCNFF	9	Unmodified	_YYHAQCNFF_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.7478637695312	2	596.747659	1191.48076	0.55701	0.0003324	-0.29795	-0.0001778	0.25907	0.0001546	596.747276376834	82.129	0.78844	82.129	81.746	82.534	0					65	27	4	0	0	0	0.21398	2	20083	20083;20133		16.942	6.1184	1	352950			26493	3524	17652	17818	35553;35554	35553					-0.1073164698536857
YYHAQCNFF	9	Unmodified	_YYHAQCNFF_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	596.747659	1191.48076	0.15298	9.1291E-05	0.096355	5.7499E-05	0.24934	0.00014879	596.7475421998103	82.107	0.54874	82.129	81.876	82.424	0.021866	-0.00010306	0.0002189	NaN	16.942	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513720			26494	3524	17652	17818							-0.1073164698536857
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	416.8673400878906	3	416.532979	1246.57711	-0.063943	-2.6634E-05	-0.2058	-8.5722E-05	-0.26974	-0.00011236	416.53286408877386	42.828	1.9529	42.828	42.517	44.47	0					148	68	5	0	0	0	0.30075	1	8112	8112		6.6304	1.9145	1	379650			26495	1587	17653	17819	35555	35555					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.295166015625	2	624.29583	1246.57711	-0.55908	-0.00034903	-0.15527	-9.6937E-05	-0.71435	-0.00044597	624.2958196447469	42.887	0.43744	42.887	42.654	43.091	0					24	14	2	0	0	0	0.29079	1	8147	8147		11.495	8.9962	1	49980			26496	1587	17653	17819	35556	35556					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	416.53289794921875	3	416.532979	1246.57711	-0.33352	-0.00013892	0.16977	7.0717E-05	-0.16374	-6.8205E-05	416.5330429630378	42.67	1.436	42.76	42.492	43.928	0.089767					131	53	4	0	0	0	0.26705	3	7984	7939;7984;8024		10.8	6.61	1	743190			26497	1587	17653	17819	35557;35558;35559	35558					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.2962036132812	2	624.29583	1246.57711	-0.28175	-0.00017589	0.19069	0.00011905	-0.091056	-5.6846E-05	624.2960169226403	42.684	0.52036	42.774	42.571	43.092	0.089764					35	19	2	0	0	0	0.19079	1	7964	7964		20.415	16.818	1	122520			26498	1587	17653	17819	35560	35560					-0.03631756153754395
YYHDIDHSEF	10	Unmodified	_YYHDIDHSEF_					0	0	0			REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	442.51824951171875	3	442.519287	1324.53603	0.3262	0.00014435	-2.0288	-0.00089779	-1.7026	-0.00075344	442.51827203557474	49.17	0.4789	49.17	48.973	49.452	0					42	16	3	0	0	0	0.47119	1	10059	10059		0.77653	0	1	108390	+		26499	13004	17654	17820	35561	35561					-0.11325561983926491
YYHDIDHSEF	10	Unmodified	_YYHDIDHSEF_					0	0	0			REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	442.519287	1324.53603	0.3262	0.00014435	-2.0288	-0.00089779	-1.7026	-0.00075344	442.51827203557474	49.17	0.4789	49.17	48.973	49.452	0	-0.012279	-0.00013163	NaN	0.77653	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108390	+		26500	13004	17654	17820							-0.11325561983926491
YYHDIDHSEF	10	Unmodified	_YYHDIDHSEF_					0	0	0			REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		3	442.519287	1324.53603	-0.016195	-7.1664E-06	-1.7766	-0.00078616	-1.7928	-0.00079333	442.518419020336	49.118	0.4475	49.195	48.956	49.404	0.076607	0.012279	0.00020325	NaN	0.77653	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113770	+		26501	13004	17654	17820							-0.11325561983926491
YYHFELLL	8	Unmodified	_YYHFELLL_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	549.7767944335938	2	549.286943	1096.55933	0.52312	0.00028734	-1.8341	-0.0010075	-1.311	-0.00072011	549.2857217865825	77.522	0.18575	77.557	77.489	77.675	0.034485					7	5	2	0	0	0	0.35759	1	18535	18535		10.183	1.5901	1	80168	+		26502	8064	17655	17821	35562	35562					0.014915285913957632
YYHLFDIF	8	Unmodified	_YYHLFDIF_					0	0	0		tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2715454101562	2	559.271293	1116.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.11	1	105.14	104.64	105.64	0.034004								0	0	0	0.38822	1	26887	26887		5.2307	0.47466	1				26503	13469	17656	17822	35563	35563					-0.025570444427330585
YYHSPPHLPPY	11	Unmodified	_YYHSPPHLPPY_					0	0	0		nc|ENSG00000125355|Q5JRV8-2|TMEM255A;nc|ENSG00000125355|Q5JRV8-4|TMEM255A;ENSG00000125355|ENST00000371369|TMEM255A;nc|ENSG00000125355|Q5JRV8|TMEM255A	nc|ENSG00000125355|Q5JRV8-2|TMEM255A	nc|ENSG00000125355|Q5JRV8-2|TMEM255A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.55682373046875	3	457.555784	1369.64552	0.13113	6E-05	2.1958	0.0010047	2.327	0.0010647	457.89117649968045	46.682	0.29749	46.765	46.666	46.964	0.083092					22	14	2	0	0	0	0.41254	1	9207	9207		1.4551	0	1	152180			26504	2288	17657	17823	35564	35564					-0.024515115738950044
YYHTTSEYI	9	Unmodified	_YYHTTSEYI_					0	0	0			REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G	REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.764892578125	2	588.764029	1175.5135	0.57355	0.00033768	1.1804	0.000695	1.754	0.0010327	588.7648681840261	94.179	0.27982	94.179	94.063	94.343	0					23	13	2	0	0	0	0.25209	1	23804	23804		12.532	3.1484	1	68475	+		26505	7958	17658	17824	35565	35565					-0.06723161381523823
YYHTTSEYI	9	Unmodified	_YYHTTSEYI_					0	0	0			REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G	REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8193969726562	2	588.764029	1175.5135	0.59787	0.00035201	1.0839	0.00063818	1.6818	0.00099018	588.7645180912607	94.134	0.19652	94.173	94.123	94.32	0.038094					12	7	2	0	0	0	0.25051	1	23634	23634		7.9102	2.6795	1	50885	+		26506	7958	17658	17824	35566	35566					-0.06723161381523823
YYIAWFVSS	9	Unmodified	_YYIAWFVSS_					0	0	0			REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant	REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.2619018554688	2	568.276575	1134.5386	0.050079	2.8459E-05	-4.0733	-0.0023148	-4.0232	-0.0022863	568.2748722048461	48.975	0.34394	49.051	48.872	49.216	0.076603					27	12	3	0	0	0	0.20367	1	9901	9901		18.135	4.6271	1	74324	+		26507	12932	17659	17825	35567	35567					-0.023290617882821607
YYIAWFVSS	9	Unmodified	_YYIAWFVSS_					0	0	0			REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant	REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	568.276575	1134.5386	0.13495	7.6687E-05	-3.5681	-0.0020276	-3.4331	-0.001951	568.2745285418675	49.056	0.27809	49.056	48.945	49.223	0	0.0026092	7.6105E-05	NaN	18.135	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80277	+		26508	12932	17659	17825							-0.023290617882821607
YYIAWFVSS	9	Unmodified	_YYIAWFVSS_					0	0	0			REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant	REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	568.276575	1134.5386	0.050079	2.8459E-05	-4.0733	-0.0023148	-4.0232	-0.0022863	568.2748722048461	48.975	0.34394	49.051	48.872	49.216	0.076603	-0.0026092	-0.00049814	NaN	18.135	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74324	+		26509	12932	17659	17825							-0.023290617882821607
YYICCVLYTL	10	Unmodified	_YYICCVLYTL_					0	0	0			REV__ENST00000321250.12_1_8:29964347-29964383:+|nuORF	REV__ENST00000321250.12_1_8:29964347-29964383:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.2994995117188	2	627.300878	1252.5872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.711	1	14.711	14.211	15.211	0								0	0	0	0.33979	1	422	422		0.45834	0.15131	1		+		26510	11394	17660	17826	35568	35568					-0.0289865253505468
YYIDFVAQE	9	Unmodified	_YYIDFVAQE_					0	0	0			REV__nc|ENSG00000170017|Q13740-2|ALCAM	REV__nc|ENSG00000170017|Q13740-2|ALCAM	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	573.7647705078125	2	574.268947	1146.52334	0.20397	0.00011714	0.042136	2.4198E-05	0.24611	0.00014133	574.7721768489714	59.613	0.61587	59.613	59.194	59.81	0					35	24	2	0	0	0	0.2491	1	13168	13168		8.5933	4.264	1	111020	+		26511	10196	17661	17827	35569	35569					-0.044059733761287134
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.3161010742188	2	610.315897	1218.61724	0.72155	0.00044037	-0.086188	-5.2602E-05	0.63536	0.00038777	610.3156903999634	66.674	1.241	66.674	66.428	67.669	0					146	47	4	0	0	0	5.7754E-06	4	15397	15359;15397;15442;15491		152.89	90.313	1	5809700			26512	4559	17662	17828	35570;35571;35572;35573	35571					0.016677457261494055
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.3161010742188	2	610.315897	1218.61724	0.73609	0.00044925	-0.090938	-5.5501E-05	0.64515	0.00039375	610.3156909555572	66.626	1.2145	66.691	66.451	67.666	0.065063					137	44	5	0	0	0	0.00066972	4	15248	15206;15248;15294;15344		128.93	83.233	1	5718700			26513	4559	17662	17828	35574;35575;35576;35577	35575					0.016677457261494055
YYIFFLFF	8	Unmodified	_YYIFFLFF_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.31103515625	2	580.296779	1158.57901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.446	1	65.446	64.946	65.946	0								0	0	0	0.3821	1	15021	15021		24.21	13.095	1				26514	4687	17663	17829	35578	35578					0.006059046021391623
YYIFFLFF	8	Unmodified	_YYIFFLFF_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3113403320312	2	580.296779	1158.57901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.458	1	65.525	65.025	66.025	0.066872								0	0	0	0.37709	1	14879	14879		32.454	15.367	1				26515	4687	17663	17829	35579	35579					0.006059046021391623
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3187255859375	2	589.318243	1176.62193	0.36333	0.00021412	0.10156	5.9851E-05	0.46489	0.00027397	589.3186391746998	73.992	2.1324	73.992	73.716	75.849	0					291	83	6	0	0	0	1.7199E-05	11	17714	17582;17625;17667;17714;17762;17807;17854;17902;18019;18065;18186		142.08	105.57	1	72124000			26516	5557	17664	17830	35580;35581;35582;35583;35584;35585;35586;35587;35588;35589;35590	35583					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.31787109375	2	589.318243	1176.62193	0.49997	0.00029464	-1.1671	-0.0006878	-0.66714	-0.00039316	589.3173756206342	75.922	0.099251	75.922	75.849	75.948	0					13	8	2	0	0	0	0.048027	1	18211	18211		43.772	31.241	1	725430			26517	5557	17664	17830	35591	35591					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.319091796875	2	589.318243	1176.62193	0.90939	0.00053592	-0.24664	-0.00014535	0.66275	0.00039057	589.3179507409437	81.383	1.3918	81.383	80.674	82.066	0					74	47	2	0	0	0	0.16392	4	19706	19706;19766;19778;20022		22.736	10.205	1	132640			26518	5557	17664	17830	35592;35593;35594;35595	35592					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8165283203125	2	589.318243	1176.62193	0.66789	0.0003936	-4.045	-0.0023838	-3.3772	-0.0019902	589.8166536955347	82.361	0.78042	82.361	82.092	82.872	0					45	27	2	0	0	0	0.22344	1	20211	20211		15.847	5.6966	1	361310			26519	5557	17664	17830	35596	35596					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3179931640625	2	589.318243	1176.62193	0.074398	4.3844E-05	1.2599	0.00074246	1.3343	0.00078631	589.8203817480139	107.1	0.28771	107.1	106.95	107.23	0					35	27	2	0	0	0	0.16392	2	27613	27613;27637		22.736	8.8302	1	52114			26520	5557	17664	17830	35597;35598	35597					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3175659179688	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.588	1	75.588	75.088	76.088	0								0	0	0	0.084126	1	18113	18113		38.176	25.644	1				26521	5557	17664	17830	35599	35599					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.317626953125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.737	1	75.737	75.237	76.237	0								0	0	0	0.017943	1	18159	18159		63.961	45.587	1				26522	5557	17664	17830	35600	35600					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3200073242188	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.114	1	77.114	76.614	77.614	0								0	0	0	0.13619	1	18582	18582		27.629	15.097	1				26523	5557	17664	17830	35601	35601					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.318359375	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.072	1	78.072	77.572	78.572	0								0	0	0	0.16903	1	18876	18876		22.736	10.205	1				26524	5557	17664	17830	35602	35602					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3180541992188	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.567	1	78.567	78.067	79.067	0								0	0	0	0.16903	1	19026	19026		22.736	10.205	1				26525	5557	17664	17830	35603	35603					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3180541992188	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.026	1	79.026	78.526	79.526	0								0	0	0	0.16903	1	19166	19166		22.736	10.205	1				26526	5557	17664	17830	35604	35604					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3194580078125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.185	1	79.185	78.685	79.685	0								0	0	0	0.16903	1	19214	19214		22.736	10.205	1				26527	5557	17664	17830	35605	35605					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3182373046875	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.431	1	79.431	78.931	79.931	0								0	0	0	0.16903	1	19289	19289		22.736	6.8891	1				26528	5557	17664	17830	35606	35606					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3185424804688	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.621	1	79.621	79.121	80.121	0								0	0	0	0.16903	1	19347	19347		22.736	10.205	1				26529	5557	17664	17830	35607	35607					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3179931640625	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.932	1	79.932	79.432	80.432	0								0	0	0	0.19239	1	19442	19442		19.257	3.4098	1				26530	5557	17664	17830	35608	35608					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3195190429688	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.159	1	84.159	83.659	84.659	0								0	0	0	0.19239	1	20729	20729		19.257	6.7254	1				26531	5557	17664	17830	35609	35609					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3179321289062	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.975	1	94.975	94.475	95.475	0								0	0	0	0.22786	1	24017	24017		13.906	5.9959	1				26532	5557	17664	17830	35610	35610					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7634887695312	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.357	1	95.357	94.857	95.857	0								0	0	0	0.24978	1	24134	24134		9.3831	1.473	1				26533	5557	17664	17830	35611	35611					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3011474609375	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.424	1	99.424	98.924	99.924	0								0	0	0	0.22786	1	25370	25370		13.906	1.3745	1				26534	5557	17664	17830	35612	35612					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.319091796875	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.591	1	99.591	99.091	100.09	0								0	0	0	0.24978	1	25420	25420		9.3831	5.0539	1				26535	5557	17664	17830	35613	35613					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2423095703125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.93	1	100.93	100.43	101.43	0								0	0	0	0.19239	1	25829	25829		19.257	6.7254	1				26536	5557	17664	17830	35614	35614					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3186645507812	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.35	1	101.35	100.85	101.85	0								0	0	0	0.24978	1	25958	25958		9.3831	1.473	1				26537	5557	17664	17830	35615	35615					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3199462890625	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.7	1	101.7	101.2	102.2	0								0	0	0	0.26747	1	26061	26061		5.7319	1.4026	1				26538	5557	17664	17830	35616	35616					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.2936401367188	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.77	1	101.77	101.27	102.27	0								0	0	0	0.22786	1	26084	26084		13.906	5.9959	1				26539	5557	17664	17830	35617	35617					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3189086914062	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.75	1	106.75	106.25	107.25	0								0	0	0	0.19239	1	27536	27536		19.257	5.3509	1				26540	5557	17664	17830	35618	35618					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3181762695312	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.9	1	106.9	106.4	107.4	0								0	0	0	0.16903	1	27580	27580		22.736	3.4793	1				26541	5557	17664	17830	35619	35619					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3203125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.29	1	107.29	106.79	107.79	0								0	0	0	0.22786	1	27686	27686		13.906	5.9959	1				26542	5557	17664	17830	35620	35620					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3621826171875	2	589.318243	1176.62193	0.60268	0.00035517	-0.25899	-0.00015263	0.34369	0.00020255	589.31844297975	83.14	1.0176	83.14	82.823	83.841	0					58	34	2	0	0	0	0.20194	1	20453	20453		24.021	11.489	1	91181			26543	5557	17664	17830	35621	35621					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3432006835938	2	589.318243	1176.62193	0.43626	0.0002571	-3.0243	-0.0017823	-2.588	-0.0015252	589.315689152871	87.364	0.41019	87.364	87.163	87.574	0					20	15	2	0	0	0	0.2229	1	21650	21650		19.257	2.1441	1	81389			26544	5557	17664	17830	35622	35622					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.756591796875	2	589.318243	1176.62193	0.69882	0.00041183	0.036315	2.1401E-05	0.73514	0.00043323	589.3182633352209	93.301	0.32742	93.301	93.031	93.358	0					16	12	2	0	0	0	0.2418	1	23477	23477		13.906	1.3745	1	48950			26545	5557	17664	17830	35623	35623					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3190307617188	2	589.318243	1176.62193	0.6129	0.00036119	-0.1864	-0.00010985	0.4265	0.00025134	589.318474137211	73.954	2.2161	74.003	73.669	75.886	0.048538					287	87	6	0	0	0	5.0762E-05	13	17451	17408;17451;17494;17541;17591;17635;17677;17722;17768;17862;17914;17961;18005		139.14	97.183	1	58630000			26546	5557	17664	17830	35624;35625;35626;35627;35628;35629;35630;35631;35632;35633;35634;35635;35636	35625					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3184204101562	2	589.318243	1176.62193	0.77297	0.00045553	0.36862	0.00021723	1.1416	0.00067276	589.318474645814	81.163	2.1971	81.186	80.075	82.272	0.023605					110	78	2	0	0	0	0.19398	2	19539	19539;19607		19.257	6.7254	1	114780			26547	5557	17664	17830	35637;35638	35637					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.817138671875	2	589.318243	1176.62193	0.51049	0.00030084	-4.0067	-0.0023612	-3.4962	-0.0020604	589.816641622531	82.456	0.54282	82.478	82.221	82.764	0.021744					33	19	2	0	0	0	0.19398	1	20042	20042		19.257	6.2145	1	314310			26548	5557	17664	17830	35639	35639					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3187255859375	2	589.318243	1176.62193	0.48451	0.00028553	1.5861	0.00093469	2.0706	0.0012202	589.3191275290941	106.92	0.10397	106.95	106.9	107	0.025711					20	11	2	0	0	0	0.24021	1	27373	27373		13.906	4.5229	1	29394			26549	5557	17664	17830	35640	35640					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3179321289062	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.963	1	76.003	75.503	76.503	0.03923								0	0	0	0.08948	1	18071	18071		36.506	17.249	1				26550	5557	17664	17830	35641	35641					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3184814453125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.259	1	78.289	77.789	78.789	0.030159								0	0	0	0.16903	1	18774	18774		22.736	6.8891	1				26551	5557	17664	17830	35642	35642					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3191528320312	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.488	1	78.518	78.018	79.018	0.030159								0	0	0	0.16903	1	18844	18844		22.736	10.205	1				26552	5557	17664	17830	35643	35643					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.31884765625	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.963	1	78.993	78.493	79.493	0.030159								0	0	0	0.16903	1	18987	18987		22.736	10.205	1				26553	5557	17664	17830	35644	35644					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.318603515625	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.144	1	79.17	78.67	79.67	0.026436								0	0	0	0.16903	1	19042	19042		22.736	10.205	1				26554	5557	17664	17830	35645	35645					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3184204101562	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.318	1	79.344	78.844	79.844	0.026436								0	0	0	0.13619	1	19095	19095		27.629	15.097	1				26555	5557	17664	17830	35646	35646					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3186645507812	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.491	1	79.517	79.017	80.017	0.026436								0	0	0	0.19239	1	19148	19148		19.257	6.7254	1				26556	5557	17664	17830	35647	35647					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3194580078125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.664	1	79.691	79.191	80.191	0.026436								0	0	0	0.19239	1	19201	19201		19.257	5.7491	1				26557	5557	17664	17830	35648	35648					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3161010742188	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.77	1	105.8	105.3	106.3	0.029739								0	0	0	0.26267	1	27070	27070		6.7232	2.3939	1				26558	5557	17664	17830	35649	35649					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.320556640625	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.87	1	106.89	106.39	107.39	0.025711								0	0	0	0.22786	1	27370	27370		13.906	5.9959	1				26559	5557	17664	17830	35650	35650					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3204345703125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.06	1	107.08	106.58	107.58	0.025711								0	0	0	0.19239	1	27421	27421		19.257	6.7254	1				26560	5557	17664	17830	35651	35651					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3204345703125	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.21	1	107.23	106.73	107.73	0.025711								0	0	0	0.15116	1	27461	27461		25.399	12.868	1				26561	5557	17664	17830	35652	35652					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3189086914062	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.21	1	107.24	106.74	107.74	0.025711								0	0	0	0.24978	1	27463	27463		9.3831	5.0539	1				26562	5557	17664	17830	35653	35653					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	589.318243	1176.62193	0.483	0.00028464	0.57006	0.00033595	1.0531	0.00062059	589.3188026690455	106.85	0.068008	106.88	106.82	106.89	0.025711	-0.11202	-0.00057849	NaN	22.736	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45785			26563	5557	17664	17830							0.04068674659561111
YYIFIVETIC	10	Unmodified	_YYIFIVETIC_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8729248046875	3	421.882509	1262.6257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.281	1	48.281	47.781	48.781	0								0	0	0	0.3384	1	9792	9792		2.086	0	1				26564	4289	17665	17831	35654	35654					0.004889763711162232
YYIGDFGGTGE	11	Unmodified	_YYIGDFGGTGE_					0	0	0			REV__nc|nan|Q5T0Z8-2|C6orf132	REV__nc|nan|Q5T0Z8-2|C6orf132	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.7530517578125	2	589.753661	1177.49277	0.51431	0.00030332	-1.6739	-0.00098718	-1.1596	-0.00068386	589.7527151862846	82.1	0.49295	82.122	81.905	82.398	0.021866					30	17	2	0	0	0	0.2893	1	19935	19935		19.257	5.6421	1	378770	+		26565	10759	17666	17832	35655	35655					-0.08887751761153595
YYILSYEEAL	10	Unmodified	_YYILSYEEAL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.87298583984375	3	421.8763	1262.60707	0.36886	0.00015561	0.64786	0.00027332	1.0167	0.00042893	421.87654152667596	49.878	2.1607	49.878	49.34	51.501	0					203	75	5	0	0	0	0.44021	1	10141	10141		6.6304	1.7334	1	1537200			26566	1591	17667	17833	35656	35656					-0.013728619990843072
YYILYFVNT	9	Unmodified	_YYILYFVNT_					0	0	0		ENST00000336032.3_1_6:89793930-89794134:+|nuORF	ENST00000336032.3_1_6:89793930-89794134:+|nuORF	ENST00000336032.3_1_6:89793930-89794134:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8109130859375	2	598.305332	1194.59611	0.25346	0.00015165	1.0811	0.00064682	1.3346	0.00079847	598.8076026325309	77.971	0.14433	77.971	77.869	78.013	0					5	4	2	0	0	0	0.25051	1	18816	18816		7.9102	0	1	62671			26567	6072	17668	17834	35657	35657					0.006597804172997712
YYIMKISFI	9	Unmodified	_YYIMKISFI_					0	0	0			REV__ENST00000575815.5_1_17:3728158-3732552:-|nuORF	REV__ENST00000575815.5_1_17:3728158-3732552:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3190307617188	2	589.319928	1176.6253	0.47661	0.00028088	0.3889	0.00022919	0.86552	0.00051007	589.3200474134846	76.286	1.2834	76.286	75.948	77.231	0					127	57	4	0	0	0	0.24021	1	18470	18470		13.906	2.2658	1	4230700	+		26568	12536	17669	17835	35658	35658					0.04405601441908402
YYINKISSTL	10	Unmodified	_YYINKISSTL_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF;ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.32666015625	2	601.326796	1200.63904	0.71515	0.00043004	-0.38797	-0.00023329	0.32719	0.00019675	601.3264787875879	54.262	0.38279	54.262	54.069	54.451	0					27	13	3	0	0	0	0.28859	1	11633	11633		23.79	9.8837	1	177970			26569	3902	17670	17836	35659	35659					0.04674550474737771
YYINKISSTL	10	Unmodified	_YYINKISSTL_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF;ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.32666015625	2	601.326796	1200.63904	0.63757	0.00038339	0.058409	3.5123E-05	0.69598	0.00041851	601.3270158824522	54.269	0.24839	54.334	54.179	54.427	0.065128					14	8	2	0	0	0	0.31515	1	11488	11488		14.405	8.1996	1	127040			26570	3902	17670	17836	35660	35660					0.04674550474737771
YYIQYLQQF	9	Unmodified	_YYIQYLQQF_					0	0	0		tr|U7T8B7|U7T8B7_FUSNUTypeIIItoxin-antitoxinsystemToxN/AbiQfamilytoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00157PE=4SV=1	tr|U7T8B7|U7T8B7_FUSNUTypeIIItoxin-antitoxinsystemToxN/AbiQfamilytoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00157PE=4SV=1	tr|U7T8B7|U7T8B7_FUSNUTypeIIItoxin-antitoxinsystemToxN/AbiQfamilytoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00157PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	633.8276977539062	2	633.313689	1264.61282	0.36395	0.0002305	-3.5314	-0.0022365	-3.1674	-0.002006	633.3112514139158	60.224	0.48845	60.224	60.069	60.558	0					28	17	2	0	0	0	0.28587	1	13487	13487		8.5933	1.8701	1	93728			26571	13744	17671	17837	35661	35661					-0.008897186967715243
YYIREERQ	8	Unmodified	_YYIREERQ_					0	0	0		nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251;ENST00000540779.1_1_12:122359430-122370014:+|nuORF;nc|ENSG00000158023|Q8TBY9-3|CFAP251	nc|ENSG00000158023|Q8TBY9-2|CFAP251	nc|ENSG00000158023|Q8TBY9-2|CFAP251	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.2929077148438	2	578.790912	1155.56727	0.3972	0.0002299	0.438	0.00025351	0.8352	0.00048341	578.7909754819271	38.488	2.6897	38.574	38.236	40.925	0.08688					202	104	4	0	0	0	0.5411	1	7296	7296		0.6015	0	1	427100			26572	3676	17672	17838	35662	35662					-0.004289441591481591
YYISEFLKN	9	Unmodified	_YYISEFLKN_					0	0	0		ENST00000290858.10_1_16:67133987-67134095:+|nuORF	ENST00000290858.10_1_16:67133987-67134095:+|nuORF	ENST00000290858.10_1_16:67133987-67134095:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.2979736328125	2	588.800414	1175.58628	0.49298	0.00029027	-3.5621	-0.0020974	-3.0691	-0.0018071	589.2990914536414	83.696	0.78056	83.718	83.361	84.142	0.021744					68	27	4	0	0	0	0.31496	1	20489	20489		4.756	0	1	383300			26573	5945	17673	17839	35663	35663					0.005505924119006522
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;SLA|p.W141L|1|0.19|ENSG00000155926|chr8:133045046-133045046|C/A|missense_variant;nc|ENSG00000155926|Q13239-2|SLA	ENSG00000155926|ENST00000338087|SLA	ENSG00000155926|ENST00000338087|SLA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.3106689453125	2	580.310949	1158.60735	0.75656	0.00043904	-0.25668	-0.00014896	0.49988	0.00029009	580.3105905222892	65.506	0.59023	65.506	65.318	65.909	0					42	21	3	0	0	0	0.15282	1	15084	15084		24.021	0	1	226840			26574	3601	17674	17840	35664	35664					0.034386025114145014
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;SLA|p.W141L|1|0.19|ENSG00000155926|chr8:133045046-133045046|C/A|missense_variant;nc|ENSG00000155926|Q13239-2|SLA	ENSG00000155926|ENST00000338087|SLA	ENSG00000155926|ENST00000338087|SLA	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.3113403320312	2	580.310949	1158.60735	0.64777	0.00037591	-0.09696	-5.6267E-05	0.5508	0.00031964	580.3106893645655	65.468	0.53107	65.535	65.316	65.847	0.066872					34	20	2	0	0	0	0.23908	1	14879	14879		16.149	0	1	288290			26575	3601	17674	17840	35665	35665					0.034386025114145014
YYISYERDK	9	Unmodified	_YYISYERDK_					0	0	0			REV__tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	REV__tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.321533203125	2	618.798403	1235.58225	-0.1837	-0.00011368	-1.4321	-0.00088617	-1.6158	-0.00099984	618.7975071159609	74.142	0.55061	74.142	73.977	74.527	0					38	20	3	0	0	0	0.25504	1	17782	17782		4.756	1.1595	1	301010	+		26576	13291	17675	17841	35666	35666					-0.02611497081829839
YYITGNLETF	10	Unmodified	_YYITGNLETF_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	610.7946166992188	2	610.795329	1219.5761	0.42021	0.00025666	-0.96131	-0.00058716	-0.54109	-0.0003305	610.7945981457168	74.999	0.66129	74.999	74.743	75.404	0					51	24	4	0	0	0	8.9647E-11	2	17921	17921;17958		160.69	130.05	1	723710			26577	1063	17676	17842	35667;35668	35667					-0.024900153133330605
YYITGNLETF	10	Unmodified	_YYITGNLETF_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.7943725585938	2	610.795329	1219.5761	0.42124	0.00025729	-1.029	-0.00062851	-0.60775	-0.00037121	610.7946550749821	74.941	0.65649	74.985	74.784	75.44	0.044037					47	23	3	0	0	0	3.2285E-07	2	17753	17753;17778		145.13	114.49	1	685440			26578	1063	17676	17842	35669;35670	35669					-0.024900153133330605
YYITTRAQF	9	Unmodified	_YYITTRAQF_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	581.7747802734375	2	581.798206	1161.58186	0.3108	0.00018082	-0.75609	-0.00043989	-0.44529	-0.00025907	581.7977010512649	50.675	0.37199	50.675	50.514	50.886	0					18	12	2	0	0	0	0.20972	1	10521	10521		23.79	5.6548	1	81817			26579	416	17677	17843	35671	35671					0.007531279889917641
YYITTRAQF	9	Unmodified	_YYITTRAQF_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	581.7752075195312	2	581.798206	1161.58186	0.50883	0.00029604	0.33227	0.00019331	0.8411	0.00048935	581.7981372003928	50.535	0.29885	50.608	50.47	50.769	0.07312					17	10	2	0	0	0	0.20294	1	10353	10353		24.991	6.856	1	66878			26580	416	17677	17843	35672	35672					0.007531279889917641
YYITTRVQF	9	Unmodified	_YYITTRVQF_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	595.8134765625	2	595.813856	1189.61316	-0.17663	-0.00010524	-0.48496	-0.00028894	-0.66159	-0.00039418	595.8137998127095	58.826	0.54907	58.826	58.621	59.17	0					29	19	3	0	0	0	0.029591	1	13009	13009		51.415	34.302	1	257750			26581	319	17678	17844	35673	35673					0.025937010230791202
YYITTRVQF	9	Unmodified	_YYITTRVQF_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	595.813720703125	2	595.813856	1189.61316	0.028198	1.68E-05	-0.8525	-0.00050793	-0.8243	-0.00049113	595.8134603330765	58.721	0.47954	58.791	58.561	59.041	0.070477					26	16	3	0	0	0	0.0068798	1	12835	12835		76.825	47.743	1	223910			26582	319	17678	17844	35674	35674					0.025937010230791202
YYIYSQTYF	9	Unmodified	_YYIYSQTYF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	624.2845458984375	2	624.284597	1246.55464	-0.0058118	-3.6282E-06	0.22753	0.00014205	0.22172	0.00013842	624.2846966038808	74.108	0.84782	74.108	73.92	74.767	0					76	31	4	0	0	0	0.0040275	3	17651	17651;17708;17769		103.35	79.333	1	1631900			26583	2164	17679	17845	35675;35676;35677	35675					-0.05877400342023975
YYIYSQTYF	9	Unmodified	_YYIYSQTYF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	624.2850952148438	2	624.284597	1246.55464	0.33516	0.00020923	-0.096544	-6.0271E-05	0.23861	0.00014896	624.2844672974212	74.157	0.63086	74.205	73.962	74.593	0.048546					60	22	4	0	0	0	0.0021834	3	17480	17480;17525;17579		114.65	84.013	1	1011100			26584	2164	17679	17845	35678;35679;35680	35678					-0.05877400342023975
YYKENMFD	8	Unmodified	_YYKENMFD_					0	0	0		tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	554.7575073242188	2	555.23405	1108.45355	-0.02272	-1.2615E-05	1.2475	0.00069263	1.2247	0.00068001	555.2335697262032	26.272	0.71111	26.272	25.847	26.559	0					103	56	3	0	0	0	0.3576	1	3131	3131		2.3027	0	1	25490			26585	13492	17680	17846	35681	35681					-0.09634175316386973
YYKLNDLK	8	Unmodified	_YYKLNDLK_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP;CRTAP|p.A315D|1|0.62|ENSG00000170275|chr3:33132576-33132576|C/A|missense_variant	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7565307617188	2	528.78985	1055.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.703	1	21.703	21.203	22.203	0								0	0	0	0.38822	1	1924	1924		0	0	1				26586	4382	17681	17847	35682	35682					0.039586271030202624
YYKPRNEVEC	10	Unmodified	_YYKPRNEVEC_					0	0	0			REV__ENST00000488080.5_1_2:175711684-175870060:-|nuORF	REV__ENST00000488080.5_1_2:175711684-175870060:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	433.567626953125	3	434.204534	1299.59177	0.32276	0.00014014	-4.3772	-0.0019006	-4.0544	-0.0017604	434.2024102955471	51.181	0.31385	51.181	50.981	51.295	0					15	10	2	0	0	0	0.31802	1	10652	10652		3.8763	0.88109	1	44094	+		26587	9022	17682	17848	35683	35683					-0.04604052067907105
YYKSRFWLL	9	Unmodified	_YYKSRFWLL_					0	0	0		nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.90093994140625	3	425.901003	1274.68118	0.15047	6.4085E-05	-0.31856	-0.00013568	-0.16809	-7.159E-05	425.90085429562413	61.776	0.60574	61.849	61.704	62.31	0.073421					47	27	2	0	0	0	0.29718	1	13781	13781		7.1017	5.5094	1	296500			26588	3146	17683	17849	35684	35684					0.054825706737574365
YYKSRFWLL	9	Unmodified	_YYKSRFWLL_					0	0	0		nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	425.901003	1274.68118	0.48343	0.00020589	-0.47035	-0.00020032	0.013082	5.5718E-06	425.9007366225456	61.899	0.46574	61.899	61.737	62.203	0	0.024863	-0.00011995	NaN	7.1017	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169880			26589	3146	17683	17849							0.054825706737574365
YYKWLEQSF	9	Unmodified	_YYKWLEQSF_					0	0	0		tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8725280761719	3	421.873001	1262.59717	0.54957	0.00023185	-0.070429	-2.9712E-05	0.47914	0.00020213	421.8729047180825	47.16	2.5389	47.16	46.744	49.283	0					240	88	5	0	0	0	0.28919	3	9732	9732;10029;10080		8.1555	0	1	2215000			26590	13656	17684	17850	35685;35686;35687	35685					-0.02362005213831253
YYKYLVEL	8	Unmodified	_YYKYLVEL_					0	0	0		tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.797119140625	2	545.794601	1089.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.635	1	98.635	98.135	99.135	0								0	0	0	0.38138	1	25131	25131		25.399	1.3787	1				26591	13525	17685	17851	35688	35688					0.03344395388580779
YYKYSTAIY	9	Unmodified	_YYKYSTAIY_					0	0	0		tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.2872314453125	2	586.28714	1170.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.983	1	29.061	28.561	29.561	0.078287								0	0	0	0.28724	1	3874	3874		1.6526	0.58116	1				26592	13582	17686	17852	35689	35689					-0.018730964794258398
YYLCSILIF	9	Unmodified	_YYLCSILIF_					0	0	0			REV__ENST00000521049.5_1_8:71499819-71512292:-|nuORF	REV__ENST00000521049.5_1_8:71499819-71512292:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2617797851562	2	567.798829	1133.5831	0.13085	7.4298E-05	-0.66137	-0.00037553	-0.53052	-0.00030123	567.7982998232341	48.924	0.57013	48.924	48.683	49.253	0					22	19	2	0	0	0	0.25504	1	10058	10058		4.756	0	1	50357	+		26593	12296	17687	17853	35690	35690					0.021656260335475963
YYLDAVVSF	9	Unmodified	_YYLDAVVSF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.7689208984375	2	538.768583	1075.52261	0.83672	0.0004508	-0.080248	-4.3235E-05	0.75648	0.00040757	538.7686262741306	84.729	0.60303	84.729	84.529	85.132	0					70	26	3	0	0	0	0.0052407	4	20911	20865;20911;20960;21006		81.89	49.585	1	1065700			26594	784	17688	17854	35691;35692;35693;35694	35692					-0.012127680251751372
YYLDAVVSF	9	Unmodified	_YYLDAVVSF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.7689208984375	2	538.768583	1075.52261	0.71717	0.00038639	0.2075	0.00011179	0.92466	0.00049818	538.7687604006243	84.67	0.56773	84.693	84.547	85.115	0.023132					69	29	3	0	0	0	0.0046499	3	20743	20699;20743;20785		85.272	55.047	1	1177900			26595	784	17688	17854	35695;35696;35697	35696					-0.012127680251751372
YYLDFDVR	8	Unmodified	_YYLDFDVR_					0	0	0			REV__ENSG00000176407|ENST00000409785|KCMF1	REV__ENSG00000176407|ENST00000409785|KCMF1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	545.7634887695312	2	545.763832	1089.51311	-0.24216	-0.00013216	-0.60774	-0.00033168	-0.8499	-0.00046385	545.7635454628818	22.779	0.71716	22.779	22.337	23.055	0					135	60	3	0	0	0	0.54097	1	2184	2184		0.69038	0	1	37211	+		26596	10403	17689	17855	35698	35698					-0.02806536310708907
YYLDWIHHY	9	Unmodified	_YYLDWIHHY_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1;PRSS27-TPSB2|1|fusion	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	437.2044982910156	3	437.204862	1308.59276	0.51065	0.00022326	-0.48264	-0.00021101	0.028012	1.2247E-05	437.204636344515	62.198	0.97586	62.198	61.993	62.969	0					91	35	3	0	0	0	0.029291	4	14000	14000;14045;14090;14137		51.63	41.479	1	1038300			26597	4485	17690	17856	35699;35700;35701;35702	35699					-0.04919469636706708
YYLDWIHHY	9	Unmodified	_YYLDWIHHY_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1;PRSS27-TPSB2|1|fusion	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.2048645019531	3	437.204862	1308.59276	0.19939	8.7173E-05	-0.17497	-7.6497E-05	0.024418	1.0676E-05	437.2047646226334	62.108	0.98175	62.181	61.953	62.934	0.073421					93	35	4	0	0	0	0.017478	3	13874	13826;13874;13928		60.074	46.459	1	1431300			26598	4485	17690	17856	35703;35704;35705	35704					-0.04919469636706708
YYLDWIHHY	9	Unmodified	_YYLDWIHHY_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1;PRSS27-TPSB2|1|fusion	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	437.5393371582031	3	437.204862	1308.59276	0.27491	0.00012019	0.60363	0.00026391	0.87855	0.0003841	437.20531737147104	63.214	0.12161	63.287	63.19	63.311	0.072701					6	5	2	0	0	0	0.28919	1	14169	14169		8.1555	1.9637	1	40250			26599	4485	17690	17856	35706	35706					-0.04919469636706708
YYLDWIHHY	9	Unmodified	_YYLDWIHHY_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1;PRSS27-TPSB2|1|fusion	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	437.204862	1308.59276	0.62416	0.00027289	-0.52482	-0.00022945	0.09934	4.3432E-05	437.5389785064179	63.382	0.29889	63.382	63.232	63.531	0	0.047919	-0.00074612	NaN	8.1555	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109160			26600	4485	17690	17856							-0.04919469636706708
YYLFIIWD	8	Unmodified	_YYLFIIWD_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.2654418945312	2	566.789318	1131.56408	-0.17801	-0.00010089	0.069569	3.9431E-05	-0.10844	-6.146E-05	566.7892606891477	31.121	0.45928	31.121	30.928	31.387	0					34	21	2	0	0	0	0.53817	2	4611	4611;4617		2.5775	0	1	25378			26601	3442	17691	17857	35707;35708	35707					0.003564127341405765
YYLFIIWD	8	Unmodified	_YYLFIIWD_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.7887573242188	2	566.789318	1131.56408	-0.12259	-6.9482E-05	-0.26784	-0.00015181	-0.39043	-0.00022129	566.7891899315879	31.09	0.42716	31.163	30.964	31.391	0.073782					36	21	2	0	0	0	0.54081	1	4473	4473		0.79363	0	1	31400			26602	3442	17691	17857	35709	35709					0.003564127341405765
YYLGQWTAS	9	Unmodified	_YYLGQWTAS_					0	0	0			REV__ENST00000493471.2_1_14:23495300-23497005:-|nuORF	REV__ENST00000493471.2_1_14:23495300-23497005:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	544.7559814453125	2	544.756007	1087.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.08	1	33.154	32.654	33.654	0.074322								0	0	0	0.29525	1	5092	5092		0	0	1		+		26603	12163	17692	17858	35710	35710					-0.04278822827768636
YYLHVQSML	9	Oxidation (M)	_YYLHVQSM(Oxidation (M))L_		YYLHVQSM(1)L		YYLHVQSM(48)L	0	0	1		ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.2866821289062	2	585.286617	1168.55868	0.79472	0.00046514	-0.10259	-6.0046E-05	0.69213	0.00040509	585.2865687105023	54.651	1.0088	54.651	54.371	55.38	0					58	42	2	0	0	0	0.03472	1	11733	11733		47.749	22.349	1	161050			26604	4684	17693	17859	35711	35711		276			-0.01885634119958013
YYLHVQSML	9	Oxidation (M)	_YYLHVQSM(Oxidation (M))L_		YYLHVQSM(1)L		YYLHVQSM(48)L	0	0	1		ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.2871704101562	2	585.286617	1168.55868	0.95806	0.00056074	-0.28519	-0.00016692	0.67287	0.00039382	585.2863696641078	54.746	0.74403	54.811	54.498	55.242	0.065128					53	35	2	0	0	0	0.03472	1	11609	11609		47.749	22.349	1	134400			26605	4684	17693	17859	35712	35712		276			-0.01885634119958013
YYLKHKFL	8	Unmodified	_YYLKHKFL_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	556.319091796875	2	556.318577	1110.6226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.33	1	105.36	104.86	105.86	0.034004								0	0	0	0.38822	1	26954	26954		0.79363	0	1				26606	4062	17694	17860	35713	35713					0.07171514099286469
YYLKRFFEV	9	Unmodified	_YYLKRFFEV_					0	0	0		ENST00000543425.1_1_12:124075023-124081273:+|nuORF;ENSG00000086598|ENST00000262225|TMED2	ENST00000543425.1_1_12:124075023-124081273:+|nuORF	ENST00000543425.1_1_12:124075023-124081273:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	422.22894287109375	3	422.229008	1263.66519	0.34581	0.00014601	-0.3584	-0.00015133	-0.012591	-5.3164E-06	422.22875674982805	59.384	0.61408	59.384	59.144	59.758	0					50	24	3	0	0	0	0.19398	1	13162	13162		18.373	7.5736	1	192090			26607	981	17695	17861	35714	35714					0.04390864436822994
YYLKRFFEV	9	Unmodified	_YYLKRFFEV_					0	0	0		ENST00000543425.1_1_12:124075023-124081273:+|nuORF;ENSG00000086598|ENST00000262225|TMED2	ENST00000543425.1_1_12:124075023-124081273:+|nuORF	ENST00000543425.1_1_12:124075023-124081273:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	422.2291259765625	3	422.229008	1263.66519	0.026258	1.1087E-05	-0.055544	-2.3452E-05	-0.029286	-1.2366E-05	422.22886083251194	59.211	0.5316	59.283	59.116	59.647	0.072338					38	20	3	0	0	0	0.24438	1	12999	12999		13.615	6.5131	1	168200			26608	981	17695	17861	35715	35715					0.04390864436822994
YYLLADYHF	9	Unmodified	_YYLLADYHF_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	602.313720703125	2	602.787307	1203.56006	0.26335	0.00015875	0.10664	6.4284E-05	0.37	0.00022303	602.7874248779145	73.641	0.48466	73.641	73.464	73.949	0					44	16	3	0	0	0	0.082308	1	17555	17555		48.346	37.522	1	591310			26609	1145	17696	17862	35716	35716					-0.03357676759583228
YYLLADYHF	9	Unmodified	_YYLLADYHF_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	602.3136596679688	2	602.787307	1203.56006	0.51407	0.00030987	-0.25691	-0.00015486	0.25716	0.00015501	602.78724852266	73.608	0.55918	73.661	73.461	74.02	0.052574					52	20	4	0	0	0	0.10508	1	17353	17353		42.095	31.271	1	552550			26610	1145	17696	17862	35717	35717					-0.03357676759583228
YYLLEEEKE	9	Unmodified	_YYLLEEEKE_					0	0	0		nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3	nc|ENSG00000162711|Q96P20-3|NLRP3	nc|ENSG00000162711|Q96P20-3|NLRP3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	405.8631896972656	3	405.864172	1214.57069	0.22034	8.9427E-05	-1.6987	-0.00068943	-1.4783	-0.0006	405.8633507113528	73.941	0.50973	73.99	73.778	74.287	0.048546					25	18	2	0	0	0	0.29718	1	17482	17482		7.1017	0.90987	1	132730			26611	3851	17697	17863	35718	35718					-0.028017388958232914
YYLLEEEKE	9	Unmodified	_YYLLEEEKE_					0	0	0		nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3	nc|ENSG00000162711|Q96P20-3|NLRP3	nc|ENSG00000162711|Q96P20-3|NLRP3	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	405.864172	1214.57069	0.42297	0.00017167	-1.6411	-0.00066607	-1.2182	-0.00049441	406.19786027845475	74.034	0.65384	74.034	73.798	74.452	0	0.02175	1.6392E-05	NaN	7.1017	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595090			26612	3851	17697	17863							-0.028017388958232914
YYLLEPAYF	9	Unmodified	_YYLLEPAYF_					0	0	0			REV__CON__P02769	REV__CON__P02769	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7792358398438	2	589.792058	1177.56956	0.36712	0.00021653	-1.6882	-0.0009957	-1.3211	-0.00077917	589.7914961373998	78.862	0.37038	78.862	78.73	79.1	0					17	12	2	0	0	0	0.24749	1	19077	19077		9.3474	5.0182	1	103930	+	+	26613	7837	17698	17864	35719	35719					-0.012119084740561448
YYLLRSPFY	9	Unmodified	_YYLLRSPFY_					0	0	0		ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16	ENSG00000121680|ENST00000378750|PEX16	ENSG00000121680|ENST00000378750|PEX16	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.7440795898438	2	611.318774	1220.623	0.59618	0.00036446	-3.4598	-0.002115	-2.8636	-0.0017506	611.8171812299893	67.784	0.17556	67.847	67.728	67.904	0.063507					6	5	2	0	0	0	0.24635	1	15568	15568		10.824	2.6684	1	105710			26614	2157	17699	17865	35720	35720					0.021508890284621884
YYLLRSPFY	9	Unmodified	_YYLLRSPFY_					0	0	0		ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16	ENSG00000121680|ENST00000378750|PEX16	ENSG00000121680|ENST00000378750|PEX16	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	611.318774	1220.623	0.27268	0.00016669	-3.1146	-0.001904	-2.8419	-0.0017373	611.8169441689924	67.944	0.36367	67.944	67.794	68.158	0	0.048605	0.00018538	NaN	10.824	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65713			26615	2157	17699	17865							0.021508890284621884
YYLNDLDRI	9	Unmodified	_YYLNDLDRI_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	592.8010864257812	2	592.800946	1183.58734	0.32882	0.00019492	0.55081	0.00032652	0.87962	0.00052144	592.801301474973	61.899	0.7136	61.899	61.737	62.451	0					55	27	3	0	0	0	0.012139	1	13950	13950		81.915	56.516	1	402380			26616	676	17700	17866	35721	35721					0.0028880678080440703
YYLNDLDRI	9	Unmodified	_YYLNDLDRI_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	592.8011474609375	2	592.800946	1183.58734	0.31892	0.00018906	0.020913	1.2397E-05	0.33983	0.00020145	592.8011416317601	61.784	0.77273	61.858	61.678	62.451	0.073421					50	33	2	0	0	0	0.0087877	1	13768	13768		70.929	51.672	1	410720			26617	676	17700	17866	35722	35722					0.0028880678080440703
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8087158203125	2	599.808771	1197.60299	0.49092	0.00029446	-0.099605	-5.9744E-05	0.39132	0.00023472	599.8086201101963	63.016	1.2204	63.016	62.752	63.972	0					133	45	4	0	0	0	0.029489	2	14439	14439;14493		51.488	31.073	1	3127200			26618	1839	17701	17867	35723;35724	35723					0.01209093297848085
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	599.8086547851562	2	599.808771	1197.60299	0.40194	0.00024108	-0.017902	-1.0738E-05	0.38403	0.00023035	599.8086847654174	62.939	1.0821	63.012	62.717	63.799	0.072701					115	42	4	0	0	0	8.3707E-13	1	14081	14081		163.69	95.606	1	2184300			26619	1839	17701	17867	35725	35725					0.01209093297848085
YYLNEIQSF	9	Unmodified	_YYLNEIQSF_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.7822875976562	2	588.782222	1175.54989	0.22851	0.00013454	0.095718	5.6357E-05	0.32422	0.0001909	588.7822428981582	73.582	0.65383	73.582	73.399	74.053	0					72	23	5	0	0	0	3.7807000000000004E-25	2	17520	17520;17563		232.37	154.22	1	3145000			26620	3754	17702	17868	35726;35727	35726					-0.030862844848115856
YYLNEIQSF	9	Unmodified	_YYLNEIQSF_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.7824096679688	2	588.782222	1175.54989	0.52803	0.0003109	-0.075432	-4.4413E-05	0.4526	0.00026648	588.7820970766036	73.529	0.66743	73.581	73.379	74.046	0.052567					71	25	4	0	0	0	8.600400000000001E-24	3	17348	17298;17348;17398		216.57	138.42	1	2358100			26621	3754	17702	17868	35728;35729;35730	35729					-0.030862844848115856
YYLNFISAI	9	Unmodified	_YYLNFISAI_					0	0	0		SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1	SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.2925415039062	2	552.292225	1102.5699	0.56935	0.00031445	0.16636	9.188E-05	0.73572	0.00040633	552.2922799562493	91.721	1.1686	91.721	91.319	92.487	0					62	43	3	0	0	0	0.0032694	3	23047	22997;23047;23071		108	15.175	1	1211900			26622	13356	17703	17869	35731;35732;35733	35732					0.02271511245817237
YYLNFISAI	9	Unmodified	_YYLNFISAI_					0	0	0		SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1	SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.2924194335938	2	552.292225	1102.5699	0.48314	0.00026683	0.21481	0.00011864	0.69795	0.00038547	552.2923182102885	91.677	1.1659	91.712	91.308	92.474	0.035446					62	41	3	0	0	0	0.0032694	3	22880	22831;22880;22897		108	15.175	1	1187700			26623	13356	17703	17869	35734;35735;35736	35735					0.02271511245817237
YYLNGHWTI	9	Unmodified	_YYLNGHWTI_					0	0	0		nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN;nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-6|PAPLN	nc|ENSG00000100767|O95428-6|PAPLN	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	583.7864379882812	2	583.785099	1165.55564	0.52792	0.00030819	1.454	0.00084882	1.9819	0.001157	583.7856963629882	60.699	0.42215	60.772	60.605	61.027	0.073421					19	14	2	0	0	0	0.24021	1	13451	13451		13.906	3.0821	1	133100			26624	1217	17704	17870	35737	35737					-0.02051141182482752
YYLNGHWTI	9	Unmodified	_YYLNGHWTI_					0	0	0		nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN;nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-6|PAPLN	nc|ENSG00000100767|O95428-6|PAPLN	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	583.785099	1165.55564	0.60669	0.00035418	0.57556	0.000336	1.1823	0.00069018	583.7850344500887	60.789	0.66379	60.789	60.396	61.059	0	0.0081562	-0.00024564	NaN	13.906	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139090			26625	1217	17704	17870							-0.02051141182482752
YYLNILDWS	9	Unmodified	_YYLNILDWS_					0	0	0		CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant;nc|ENSG00000164287|Q86Y33-4|CDC20B;nc|ENSG00000164287|Q86Y33-3|CDC20B;nc|ENSG00000164287|Q86Y33-2|CDC20B;ENSG00000164287|ENST00000381375|CDC20B	CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	593.1576538085938	2	593.792589	1185.57063	0.30191	0.00017927	1.0308	0.00061208	1.3327	0.00079135	594.2944054378719	62.496	0.5157	62.569	62.261	62.777	0.072701					25	17	2	0	0	0	0.25579	1	13887	13887		4.3292	0	1	150900			26626	117	17705	17871	35738	35738					-0.014736941051296526
YYLNILDWS	9	Unmodified	_YYLNILDWS_					0	0	0		CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant;nc|ENSG00000164287|Q86Y33-4|CDC20B;nc|ENSG00000164287|Q86Y33-3|CDC20B;nc|ENSG00000164287|Q86Y33-2|CDC20B;ENSG00000164287|ENST00000381375|CDC20B	CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	593.792589	1185.57063	0.36972	0.00021954	0.25307	0.00015027	0.62279	0.00036981	594.2937950179095	62.493	0.49821	62.493	62.285	62.783	0	-0.037763	-0.0001945	NaN	4.3292	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186510			26627	117	17705	17871							-0.014736941051296526
YYLPCFKNT	9	Unmodified	_YYLPCFKNT_					0	0	0			REV__ENSG00000122728|ENST00000242310|TAF1L	REV__ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.29052734375	2	574.775885	1147.53722	-0.43001	-0.00024716	0.14905	8.5672E-05	-0.28095	-0.00016149	575.2775588805832	42.414	0.2939	42.414	42.305	42.599	0					14	9	2	0	0	0	0.25845	1	8000	8000		2.0598	0.40713	1	29859	+		26628	8920	17706	17872	35739	35739					-0.030650191486984113
YYLPCFKNT	9	Unmodified	_YYLPCFKNT_					0	0	0			REV__ENSG00000122728|ENST00000242310|TAF1L	REV__ENSG00000122728|ENST00000242310|TAF1L	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	574.775885	1147.53722	-0.25213	-0.00014492	-0.27886	-0.00016028	-0.53099	-0.0003052	574.7754805578322	42.423	0.33473	42.513	42.316	42.65	0.089767	0.049319	-0.00032114	NaN	2.0598	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36094	+		26629	8920	17706	17872							-0.030650191486984113
YYLPGVIENMG	11	Unmodified	_YYLPGVIENMG_					0	0	0			REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13	REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	627.8482666015625	2	628.305007	1254.59546	0.086592	5.4406E-05	-2.6981	-0.0016953	-2.6115	-0.0016408	628.3035043301369	78.815	0.3963	78.815	78.651	79.047	0					21	13	2	0	0	0	0.31062	1	19145	19145		2.4985	0.84587	1	124200	+		26630	8584	17707	17873	35740	35740					-0.021653822940606915
YYLPHLFPSF	10	Unmodified	_YYLPHLFPSF_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	642.3258666992188	2	642.326599	1282.63865	0.19977	0.00012832	-0.13085	-8.4051E-05	0.068915	4.4266E-05	642.3263215582432	83.122	0.42974	83.144	82.958	83.387	0.021744					30	14	3	0	0	0	0.16299	1	20272	20272		37.974	22.726	1	141770			26631	5162	17708	17874	35741	35741					0.008631755455326129
YYLPHLFPSF	10	Unmodified	_YYLPHLFPSF_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	642.326599	1282.63865	0.37515	0.00024097	-0.03715	-2.3863E-05	0.338	0.00021711	642.3265509572285	83.114	0.47272	83.114	82.928	83.401	0	-0.014817	4.093E-05	NaN	37.974	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175640			26632	5162	17708	17874							0.008631755455326129
YYLQGGFNKF	10	Unmodified	_YYLQGGFNKF_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.80615234375	2	618.806031	1235.59751	-0.54305	-0.00033604	0.31085	0.00019236	-0.23219	-0.00014368	618.8062783696798	58.833	0.5217	58.833	58.572	59.093	0					61	18	5	0	0	0	1.4743E-06	3	12968	12937;12968;13019		139.14	103.01	1	1236900			26633	3982	17709	17875	35742;35743;35744	35743					-0.010865854939538622
YYLQGGFNKF	10	Unmodified	_YYLQGGFNKF_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.8057861328125	2	618.806031	1235.59751	-0.1686	-0.00010433	-0.13405	-8.2952E-05	-0.30266	-0.00018729	618.8060333631665	58.663	0.55275	58.734	58.561	59.114	0.070477					58	19	4	0	0	0	4.0214E-05	1	12851	12851		118.89	89.813	1	1297100			26634	3982	17709	17875	35745	35745					-0.010865854939538622
YYLQGGFSRF	10	Unmodified	_YYLQGGFSRF_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	619.3038940429688	2	619.303655	1236.59276	0.01609	9.9646E-06	0.25633	0.00015874	0.27242	0.00016871	619.3037880123467	60.531	0.77515	60.531	60.31	61.086	0					49	27	3	0	0	0	0.010985	2	13505	13505;13554		75.571	52.422	1	468490			26635	2502	17710	17876	35746;35747	35746					-0.016074696367240904
YYLQGGFSRF	10	Unmodified	_YYLQGGFSRF_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.3037719726562	2	619.303655	1236.59276	-0.13234	-8.1961E-05	0.62845	0.0003892	0.49611	0.00030724	619.303887629546	60.446	0.86549	60.519	60.306	61.171	0.073421					45	29	2	0	0	0	0.051941	2	13340	13340;13389		57.108	33.959	1	421180			26636	2502	17710	17876	35748;35749	35748					-0.016074696367240904
YYLQHPPISF	10	Unmodified	_YYLQHPPISF_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;VPS53-ABR|1|fusion;EWSR1-ABR|1|fusion;nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.8220825195312	2	632.821681	1263.62881	0.48542	0.00030719	-0.16476	-0.00010426	0.32067	0.00020292	633.3232147624607	65.238	0.44489	65.238	65.001	65.446	0					21	15	2	0	0	0	0.27736	1	14944	14944		24.991	13.496	1	140550			26637	3743	17711	17877	35750	35750					0.007539875401107565
YYLQHPPISF	10	Unmodified	_YYLQHPPISF_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;VPS53-ABR|1|fusion;EWSR1-ABR|1|fusion;nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	632.3471069335938	2	632.821681	1263.62881	0.43801	0.00027718	-0.20837	-0.00013186	0.22964	0.00014532	632.8214733627767	65.205	0.3653	65.273	65.087	65.452	0.068916					17	13	2	0	0	0	0.31219	1	14801	14801		17.113	8.3675	1	131140			26638	3743	17711	17877	35751	35751					0.007539875401107565
YYLRTYINE	9	Unmodified	_YYLRTYINE_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3214721679688	2	617.808771	1233.60299	-0.41668	-0.00025743	-1.6648	-0.0010285	-2.0815	-0.001286	617.8079728516199	73.464	0.39904	73.464	73.399	73.798	0					20	14	2	0	0	0	0.33356	1	17513	17513		2.3027	0	1	187710			26639	1925	17712	17878	35752	35752					-0.004469067021545925
YYLSAALRMF	10	Unmodified	_YYLSAALRMF_					0	0	0			REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.321533203125	2	617.818084	1233.62162	-0.17528	-0.00010829	0.90704	0.00056038	0.73176	0.00045209	618.3209339997312	74.256	1.4875	74.256	73.661	75.148	0					106	54	3	0	0	0	0.44246	1	17782	17782		6.2058	0	1	294460	+		26640	12494	17713	17879	35753	35753					0.014149316680459378
YYLSKIEEL	9	Unmodified	_YYLSKIEEL_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.3076782226562	2	579.308072	1156.60159	0.47968	0.00027788	-0.24087	-0.00013954	0.23881	0.00013835	579.3077314449871	59.879	0.96954	59.879	59.7	60.669	0					80	35	4	0	0	0	0.002259	3	13305	13305;13350;13454		114.19	74.229	1	797910			26641	989	17714	17880	35754;35755;35756	35754					0.029554592091017184
YYLSKIEEL	9	Unmodified	_YYLSKIEEL_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.3079223632812	2	579.308072	1156.60159	0.31634	0.00018326	0.076056	4.406E-05	0.3924	0.00022732	579.3079792875343	59.778	0.81361	59.85	59.647	60.461	0.072338					66	30	3	0	0	0	0.0056345	1	13187	13187		93.938	59.536	1	661330			26642	989	17714	17880	35757	35757					0.029554592091017184
YYLTDNLTF	9	Unmodified	_YYLTDNLTF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7498779296875	2	575.276772	1148.53899	0.6814	0.000392	0.82825	0.00047647	1.5097	0.00086847	575.2772660104494	80.484	0.7536	80.507	80.219	80.973	0.023605					45	26	3	0	0	0	0.13858	1	19449	19449		31.268	21.194	1	119260			26643	5330	17715	17881	35758	35758					-0.029336868591144594
YYLTHGLYL	9	Unmodified	_YYLTHGLYL_					0	0	0		nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	571.7981567382812	2	571.797675	1141.5808	0.54478	0.00031151	-0.25536	-0.00014601	0.28943	0.00016549	571.7974610609874	64.72	1.3648	64.72	64.457	65.822	0					124	49	4	0	0	0	0.0046476	1	14770	14770		85.357	38.436	1	1158900			26644	1261	17716	17882	35759	35759					0.0156691362010406
YYLTHGLYL	9	Unmodified	_YYLTHGLYL_					0	0	0		nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7979736328125	2	571.797675	1141.5808	0.42725	0.0002443	0.018356	1.0496E-05	0.44561	0.0002548	571.7976162708194	64.684	1.2336	64.753	64.478	65.712	0.068916					104	47	5	0	0	0	0.00039488	1	14599	14599		101.72	54.801	1	1079000			26645	1261	17716	17882	35760	35760					0.0156691362010406
YYLVVLCLF	9	Unmodified	_YYLVVLCLF_					0	0	0			REV__ENST00000524311.1_1_X:148850572-148853026:+|nuORF	REV__ENST00000524311.1_1_X:148850572-148853026:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.2971801757812	2	566.809196	1131.60384	0.18028	0.00010219	-0.59884	-0.00033943	-0.41856	-0.00023724	566.8090857531844	103.01	0.82724	103.01	102.6	103.43	0					110	56	3	0	0	0	0.25416	1	26539	26539		5.2307	0	1	210760	+		26646	11031	17717	17883	35761	35761					0.04330216413177368
YYLWPAVQL	9	Unmodified	_YYLWPAVQL_					0	0	0		ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	576.8079223632812	2	576.808042	1151.60153	0.55217	0.0003185	-0.4383	-0.00025281	0.11388	6.5685E-05	576.8077733427233	93.139	0.62308	93.176	92.863	93.486	0.037369					66	26	3	0	0	0	0.026569	1	23304	23304		53.576	43.502	1	377870			26647	1883	17718	17884	35762	35762					0.03179503999763256
YYLWPAVQL	9	Unmodified	_YYLWPAVQL_					0	0	0		ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	576.808042	1151.60153	0.59541	0.00034344	-0.56375	-0.00032518	0.031658	1.8261E-05	576.8078160218764	93.164	0.6124	93.164	92.872	93.485	0	-0.0063073	-9.7001E-05	NaN	53.576	59	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386310			26648	1883	17718	17884							0.03179503999763256
YYMDYLAAL	9	Oxidation (M)	_YYM(Oxidation (M))DYLAAL_		YYM(1)DYLAAL		YYM(60)DYLAAL	0	0	1		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.759765625	2	569.759901	1137.50525	0.63666	0.00036274	-0.55599	-0.00031678	0.08067	4.5963E-05	569.759601906738	79.741	3.1936	79.741	78.815	82.008	0					220	110	4	0	0	0	0.017037	1	19404	19404		60.39	39.936	1	1502700			26649	2326	17719	17885	35763	35763		148			-0.05800431622492397
YYMDYLAAL	9	Oxidation (M)	_YYM(Oxidation (M))DYLAAL_		YYM(1)DYLAAL		YYM(48)DYLAAL	0	0	1		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.759765625	2	569.759901	1137.50525	0.42014	0.00023938	-0.57787	-0.00032925	-0.15773	-8.9869E-05	569.7597538807418	77.832	1.035	77.867	77.62	78.655	0.034485					79	35	4	0	0	0	0.033885	1	18621	18621		48.346	33.508	1	1303500			26650	2326	17719	17885	35764	35764		148			-0.05800431622492397
YYMDYLAAL	9	Unmodified	_YYMDYLAAL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	561.7952270507812	2	561.762443	1121.51033	0.47751	0.00026825	1.0073	0.00056585	1.4848	0.0008341	561.7624415542198	87.757	0.65744	87.757	87.291	87.948	0					78	23	5	0	0	0	0.054458	1	21811	21811		57.471	39.325	1	428890			26651	2326	17719	17886	35765	35765					-0.04556127759883566
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(70)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7786865234375	2	597.778625	1193.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.863	1	50.863	50.363	51.363	0								0	0	0	0.0061521	1	10575	10575		70.332	51.075	1				26652	4176	17720	17887	35766	35766		251			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(100)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7788696289062	2	597.778625	1193.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.997	1	50.997	50.497	51.497	0								0	0	0	1.7176E-05	1	10616	10616		103.42	72.783	1				26653	4176	17720	17887	35767	35767		251			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(53)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.7786865234375	2	597.778625	1193.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.159	1	51.159	50.659	51.659	0								0	0	0	0.037785	1	10665	10665		53.404	35.258	1				26654	4176	17720	17887	35768	35768		251			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(65)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.77880859375	2	597.778625	1193.5427	0.14143	8.4543E-05	0.027122	1.6213E-05	0.16855	0.00010076	597.7786417656574	50.127	0.74507	50.127	49.906	50.651	0					64	26	3	0	0	0	0.046553	1	10345	10345		65.474	52.431	1	331120			26655	4176	17720	17887	35769	35769		251			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(83)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.77880859375	2	597.778625	1193.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.803	1	50.873	50.373	51.373	0.069874								0	0	0	0.0018677	1	10423	10423		83.429	59.408	1				26656	4176	17720	17887	35770	35770		251			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(110)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7787475585938	2	597.778625	1193.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.936	1	51.006	50.506	51.506	0.069874								0	0	0	1.6629E-08	1	10464	10464		114.2	83.565	1				26657	4176	17720	17887	35771	35771		251			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(50)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	597.7787475585938	2	597.778625	1193.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.082	1	51.152	50.652	51.652	0.069874								0	0	0	0.047634	1	10508	10508		49.554	34.716	1				26658	4176	17720	17887	35772	35772		251			-0.046333403568951326
YYMKDLPTSF	10	Oxidation (M)	_YYM(Oxidation (M))KDLPTSF_		YYM(1)KDLPTSF		YYM(63)KDLPTSF	0	0	1		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.79736328125	2	640.797014	1279.57948	0.11959	7.6632E-05	0.17673	0.00011325	0.29632	0.00018988	640.797150636725	52.885	0.66035	52.885	52.675	53.335	0					54	25	3	0	0	0	0.029684	2	11207	11162;11207		63.227	54.713	1	357390			26659	5648	17721	17888	35773;35774	35774		319			-0.04913088530997811
YYMKDLPTSF	10	Oxidation (M)	_YYM(Oxidation (M))KDLPTSF_		YYM(1)KDLPTSF		YYM(50)KDLPTSF	0	0	1		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	640.7974243164062	2	640.797014	1279.57948	0.46576	0.00029846	-0.21425	-0.00013729	0.25151	0.00016117	640.7968360095523	55.038	1.2578	55.038	54.657	55.915	0					103	45	3	0	0	0	0.079509	1	11897	11897		49.527	42.426	1	309830			26660	5648	17721	17888	35775	35775		319			-0.04913088530997811
YYMKDLPTSF	10	Oxidation (M)	_YYM(Oxidation (M))KDLPTSF_		YYM(1)KDLPTSF		YYM(50)KDLPTSF	0	0	1		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	641.2988891601562	2	640.797014	1279.57948	0.26948	0.00017268	0.084807	5.4344E-05	0.35428	0.00022702	640.7969306785159	52.841	0.52508	52.907	52.663	53.188	0.06543					54	22	3	0	0	0	0.079509	2	11054	11006;11054		49.527	39.983	1	292110			26661	5648	17721	17888	35776;35777	35777		319			-0.04913088530997811
YYMKDLPTSF	10	Oxidation (M)	_YYM(Oxidation (M))KDLPTSF_		YYM(1)KDLPTSF		YYM(57)KDLPTSF	0	0	1		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	640.796630859375	2	640.797014	1279.57948	0.48065	0.000308	-0.26153	-0.00016759	0.21912	0.00014041	640.7966024940652	54.959	1.1649	55.024	54.65	55.815	0.065132					93	46	3	0	0	0	0.051426	2	11697	11653;11697		57.249	47.175	1	194530			26662	5648	17721	17888	35778;35779	35779		319			-0.04913088530997811
YYMKDLPTSF	10	Unmodified	_YYMKDLPTSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	632.79931640625	2	632.799557	1263.58456	0.2414	0.00015276	-0.9129	-0.00057768	-0.6715	-0.00042493	632.7987679044016	62.313	0.81567	62.313	62.067	62.883	0					49	29	2	0	0	0	0.037458	1	14067	14067		61.09	36.099	1	228860			26663	5648	17721	17889	35780	35780					-0.03668784668366243
YYMKDLPTSF	10	Unmodified	_YYMKDLPTSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	633.3005981445312	2	632.799557	1263.58456	0.31781	0.00020111	-0.75576	-0.00047825	-0.43795	-0.00027714	632.798578475993	62.193	0.64403	62.266	61.988	62.632	0.073421					52	22	4	0	0	0	0.022949	1	13894	13894		65.474	34.205	1	221620			26664	5648	17721	17889	35781	35781					-0.03668784668366243
YYMLQRSSM	9	Unmodified	_YYMLQRSSM_					0	0	0		nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7594604492188	2	589.770277	1177.526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.223	1	57.223	56.723	57.723	0								0	0	0	0.2428	1	12516	12516		10.824	0.75	1				26665	7629	17722	17890	35782	35782					-0.05566164514493721
YYMLQRSSM	9	Unmodified	_YYMLQRSSM_					0	0	0		nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085-2|ACACA	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7719116210938	2	589.770277	1177.526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.8	1	105.8	105.3	106.3	0								0	0	0	0.2699	1	27264	27264		5.2307	1.6342	1				26666	7629	17722	17890	35783	35783					-0.05566164514493721
YYMQRMWEI	9	Unmodified	_YYMQRMWEI_					0	0	0			REV__ENSG00000166323|ENST00000393084|C11orf65	REV__ENSG00000166323|ENST00000393084|C11orf65	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.53350830078125	3	440.535226	1318.58385	0.57011	0.00025115	-2.8471	-0.0012542	-2.277	-0.0010031	440.5338628225975	62.796	0.42336	62.796	62.575	62.999	0					28	14	3	0	0	0	0.28472	1	14247	14247		8.7454	5.6731	1	159310	+		26667	10071	17723	17891	35784	35784					-0.06269902589042431
YYMQRMWEI	9	Unmodified	_YYMQRMWEI_					0	0	0			REV__ENSG00000166323|ENST00000393084|C11orf65	REV__ENSG00000166323|ENST00000393084|C11orf65	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	440.535226	1318.58385	0.57011	0.00025115	-2.8471	-0.0012542	-2.277	-0.0010031	440.5338628225975	62.796	0.42336	62.796	62.575	62.999	0	-0.04123	-0.00057464	NaN	8.7454	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159310	+		26668	10071	17723	17891							-0.06269902589042431
YYMRRRHL	8	Unmodified	_YYMRRRHL_					0	0	0		nc|ENSG00000188803|Q6ZSJ9|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6	nc|ENSG00000188803|Q6ZSJ9|SHISA6	nc|ENSG00000188803|Q6ZSJ9|SHISA6	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.8209228515625	2	597.819284	1193.62402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.86	1	47.86	47.36	48.36	0								0	0	0	0.38822	1	9666	9666		2.8892	0.58649	1				26669	5175	17724	17892	35785	35785					0.0349482491640174
YYMVKKIL	8	Unmodified	_YYMVKKIL_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7640991210938	2	529.309364	1056.60417	-0.12492	-6.612E-05	0.35215	0.0001864	0.22723	0.00012028	529.3096245730349	29.934	0.18553	29.934	29.844	30.03	0					9	7	2	0	0	0	0.3576	1	4260	4260		0	0	1	11541			26670	3233	17725	17893	35786	35786					0.07813636133073487
YYNAAGFNKL	10	Unmodified	_YYNAAGFNKL_					0	0	0		ENST00000518876.1_1_8:97245315-97245435:-|nuORF;ENST00000519322.1_1_8:97243965-97247767:-|nuORF;ENSG00000156467|ENST00000287022|UQCRB;nc|ENSG00000156467|P14927-2|UQCRB	ENST00000518876.1_1_8:97245315-97245435:-|nuORF	ENST00000518876.1_1_8:97245315-97245435:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	580.7899780273438	2	580.790381	1159.56621	0.29809	0.00017313	-3.0801	-0.0017889	-2.782	-0.0016157	580.7901978642319	49.116	0.47724	49.116	48.945	49.422	0					34	16	3	0	0	0	0.078033	1	10039	10039		49.933	35.095	1	116660			26671	3625	17726	17894	35787	35787					-0.0071915852806796465
YYNAAGFNKL	10	Unmodified	_YYNAAGFNKL_					0	0	0		ENST00000518876.1_1_8:97245315-97245435:-|nuORF;ENST00000519322.1_1_8:97243965-97247767:-|nuORF;ENSG00000156467|ENST00000287022|UQCRB;nc|ENSG00000156467|P14927-2|UQCRB	ENST00000518876.1_1_8:97245315-97245435:-|nuORF	ENST00000518876.1_1_8:97245315-97245435:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	580.7905883789062	2	580.790381	1159.56621	0.2831	0.00016442	-2.0654	-0.0011995	-1.7823	-0.0010351	580.7902795379191	49.011	0.48717	49.088	48.872	49.359	0.076607					34	17	3	0	0	0	0.20801	1	9887	9887		32.786	21.145	1	114610			26672	3625	17726	17894	35788	35788					-0.0071915852806796465
YYNGKWEFL	9	Unmodified	_YYNGKWEFL_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	610.29248046875	2	610.292756	1218.57096	0.55498	0.0003387	-0.3399	-0.00020744	0.21508	0.00013126	610.2924448866166	65.167	1.7685	65.236	64.632	66.401	0.068909					130	67	3	0	0	0	0.18151	1	14816	14816		23.79	15.88	1	540550			26673	3227	17727	17895	35789	35789					-0.029582743852870408
YYNGKWEFL	9	Unmodified	_YYNGKWEFL_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	610.292756	1218.57096	0.63199	0.0003857	-0.5788	-0.00035324	0.053192	3.2463E-05	610.2920775884089	65.282	1.4484	65.282	64.719	66.168	0	0.022845	-0.00016734	NaN	23.79	116	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463390			26674	3227	17727	17895							-0.029582743852870408
YYNKVSTVF	9	Unmodified	_YYNKVSTVF_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	560.7874145507812	2	560.787307	1119.56006	0.24321	0.00013639	-0.0044933	-2.5198E-06	0.23871	0.00013387	560.7872177474216	48.675	0.40486	48.675	48.483	48.888	0					25	13	2	0	0	0	0.026209	1	9900	9900		53.833	33.379	1	142780			26675	1558	17728	17896	35790	35790					0.005063232404381779
YYNKVSTVF	9	Unmodified	_YYNKVSTVF_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	560.7872314453125	2	560.787307	1119.56006	0.33382	0.0001872	0.34027	0.00019082	0.67409	0.00037802	560.7873414056153	48.547	0.37077	48.627	48.442	48.813	0.080029					24	11	3	0	0	0	0.026209	1	9753	9753		53.833	28.433	1	150450			26676	1558	17728	17896	35791	35791					0.005063232404381779
YYNLGPELEL	10	Unmodified	_YYNLGPELEL_					0	0	0		ENSG00000184344|ENST00000329913|GDF3	ENSG00000184344|ENST00000329913|GDF3	ENSG00000184344|ENST00000329913|GDF3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	404.57354736328125	3	404.204528	1209.59175	-0.36396	-0.00014711	3.5633	0.0014403	3.1993	0.0012932	404.20612341675644	41.593	0.37001	41.593	41.459	41.829	0					20	13	2	0	0	0	0.31557	1	7838	7838		14.218	5.7739	1	49646			26677	4969	17729	17897	35792	35792					-0.004657287962800183
YYNQHVFAW	9	Unmodified	_YYNQHVFAW_					0	0	0		MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	409.90594482421875	3	409.857574	1226.55089	0.33384	0.00013683	3.7263	0.0015273	4.0602	0.0016641	410.1937238055245	35.753	0.19056	35.753	35.645	35.836	0					9	6	2	0	0	0	0.25787	1	6004	6004		2.9952	1.151	1	6183.1			26678	1104	17730	17898	35793	35793					-0.053320253252422845
YYNVLKEEEPM	11	Unmodified	_YYNVLKEEEPM_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.22393798828125	3	472.223482	1413.64862	0.33119	0.0001564	0.58359	0.00027558	0.91478	0.00043198	472.22377106968446	55.051	0.67478	55.051	54.85	55.525	0					31	24	2	0	0	0	0.39824	1	11865	11865		4.7159	1.1289	1	180600	+		26679	8640	17731	17899	35794	35794					-0.041660493020572176
YYNVLKEEEPM	11	Unmodified	_YYNVLKEEEPM_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	472.2586669921875	3	472.223482	1413.64862	0.33119	0.0001564	0.58359	0.00027558	0.91478	0.00043198	472.22377106968446	55.051	0.67478	55.051	54.85	55.525	0					31	24	2	0	0	0	0.31089	1	11895	11895		2.6312	0.54523	1	180600	+		26680	8640	17731	17899	35795	35795					-0.041660493020572176
YYNVWLRAQ	9	Unmodified	_YYNVWLRAQ_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.8768005371094	3	404.876857	1211.60874	-0.30655	-0.00012412	0.034103	1.3807E-05	-0.27245	-0.00011031	404.8767491857562	29.124	0.54345	29.202	28.943	29.486	0.078289					84	35	3	0	0	0	0.31389	1	3880	3880		4.897	0	1	38281			26681	3265	17732	17900	35796	35796					0.01140236600190292
YYNVWLRAQ	9	Unmodified	_YYNVWLRAQ_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	404.876857	1211.60874	0.070716	2.8631E-05	-1.0087	-0.00040839	-0.93796	-0.00037976	405.2107563736542	29.285	0.47815	29.285	29.11	29.588	0	0.04139	-0.00087507	NaN	4.897	50	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17724			26682	3265	17732	17900							0.01140236600190292
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		ENSG00000129292|ENST00000395386|PHF20L1;nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	534.2922973632812	2	534.292225	1066.5699	0.23339	0.0001247	0.089745	4.795E-05	0.32314	0.00017265	534.2921504091513	50.805	1.0575	50.805	50.595	51.652	0					60	35	3	0	0	0	0.2094	1	10572	10572		22.736	11.912	1	421490			26683	2426	17733	17901	35797	35797					0.039275112458199146
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		ENSG00000129292|ENST00000395386|PHF20L1;nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	534.292225	1066.5699	0.49601	0.00026501	-0.039675	-2.1198E-05	0.45633	0.00024382	534.2920750966964	50.743	0.47321	50.812	50.603	51.077	0.069874	0.0036702	-8.1932E-05	NaN	22.736	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290710			26684	2426	17733	17901							0.039275112458199146
YYPEHFTLL	9	Unmodified	_YYPEHFTLL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	591.7949829101562	2	591.795132	1181.57571	0.78391	0.00046392	0.0067567	3.9986E-06	0.79067	0.00046791	591.7947402471603	66.12	0.77516	66.12	65.879	66.654	0					64	28	4	0	0	0	0.05573	2	15250	15250;15314		42.095	23.96	1	498930			26685	1153	17734	17902	35798;35799	35798					-0.00781390242514135
YYPEHFTLL	9	Unmodified	_YYPEHFTLL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	591.7953491210938	2	591.795132	1181.57571	0.64401	0.00038112	-0.22414	-0.00013264	0.41987	0.00024848	591.7948601333007	66.128	0.69848	66.195	65.971	66.67	0.066872					60	26	3	0	0	0	0.024893	3	15058	15058;15099;15175		54.774	36.639	1	368540			26686	1153	17734	17902	35800;35801;35802	35800					-0.00781390242514135
YYPELAFQF	9	Unmodified	_YYPELAFQF_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.3433837890625	2	589.281857	1176.54916	0.50994	0.0003005	0.94657	0.0005578	1.4565	0.00085829	589.2826768435901	88.584	0.88754	88.584	88.232	89.12	0					79	35	3	0	0	0	0.12752	1	22065	22065		32.786	20.254	1	926000			26687	1302	17735	17903	35803	35803					-0.032050791338633644
YYPELAFQF	9	Unmodified	_YYPELAFQF_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.282958984375	2	589.281857	1176.54916	0.56823	0.00033485	0.88279	0.00052021	1.451	0.00085506	589.2827468468782	88.546	0.89379	88.577	88.082	88.976	0.031166					79	35	3	0	0	0	0.13341	1	21923	21923		26.268	13.737	1	902540			26688	1302	17735	17903	35804	35804					-0.032050791338633644
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.8245239257812	2	618.320983	1234.62741	-0.43243	-0.00026738	0.37666	0.00023289	-0.055775	-3.4487E-05	618.822709066456	73.197	0.68802	73.197	72.973	73.661	0					33	24	2	0	0	0	0.27332	1	17457	17457		10.074	0	1	294990			26689	3738	17736	17904	35805	35805					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.32080078125	2	618.320983	1234.62741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.099	1	78.099	77.599	78.599	0								0	0	0	0.2428	1	18884	18884		10.824	4.1008	1				26690	3738	17736	17904	35806	35806					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	618.3214721679688	2	618.320983	1234.62741	-0.16075	-9.9394E-05	0.64857	0.00040102	0.48782	0.00030163	618.3215233464432	73.389	1.012	73.441	72.925	73.937	0.052574					69	38	2	0	0	0	0.27332	2	17360	17360;17406		10.074	3.3508	1	175700			26691	3738	17736	17904	35807;35808	35807					0.019483534513710765
YYPFSYLF	8	Unmodified	_YYPFSYLF_					0	0	0		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	550.2608032226562	2	550.260394	1098.50623	0.31869	0.00017536	0.88058	0.00048455	1.1993	0.00065991	550.2610063895485	95.583	0.57623	95.583	95.349	95.925	0					40	25	2	0	0	0	0.3322	2	24254	24254;24285		32.117	11.246	1	527170			26692	847	17737	17905	35809;35810	35809					-0.03907849191296009
YYPFSYLF	8	Unmodified	_YYPFSYLF_					0	0	0		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	550.7385864257812	2	550.260394	1098.50623	0.35697	0.00019643	1.0914	0.00060056	1.4484	0.00079699	550.2610015206304	95.484	0.5199	95.523	95.386	95.906	0.038872					41	24	2	0	0	0	0.093127	1	24036	24036		67.035	40.694	1	268080			26693	847	17737	17905	35811	35811					-0.03907849191296009
YYPPSQYLL	9	Unmodified	_YYPPSQYLL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	572.7913208007812	2	572.289682	1142.56481	-0.027674	-1.5837E-05	0.020565	1.1769E-05	-0.0071084	-4.0681E-06	572.289546765451	72.663	1.1052	72.663	71.948	73.053	0					64	38	2	0	0	0	0.07372	1	17228	17228		38.176	17.304	1	214940			26694	3359	17738	17906	35812	35812					-0.0007679261680095806
YYPPSQYLL	9	Unmodified	_YYPPSQYLL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.289306640625	2	572.289682	1142.56481	0.12383	7.0867E-05	-0.29039	-0.00016619	-0.16656	-9.5321E-05	572.2894753326815	72.671	1.0596	72.727	71.921	72.981	0.055939					50	36	2	0	0	0	0.098463	1	17084	17084		32.786	11.914	1	221770			26695	3359	17738	17906	35813	35813					-0.0007679261680095806
YYPQDELIR	9	Unmodified	_YYPQDELIR_					0	0	0		nc|ENSG00000163879|O14645-2|DNALI1	nc|ENSG00000163879|O14645-2|DNALI1	nc|ENSG00000163879|O14645-2|DNALI1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.244140625	2	598.800946	1195.58734	0.30665	0.00018362	3.3024	0.0019775	3.609	0.0021611	598.8028378709167	62.752	0.31301	62.824	62.571	62.884	0.072701					13	10	2	0	0	0	0.25281	1	14014	14014		6.7232	2.3939	1	100210			26696	7549	17739	17907	35814	35814					-0.0026319321921164374
YYPQDELIR	9	Unmodified	_YYPQDELIR_					0	0	0		nc|ENSG00000163879|O14645-2|DNALI1	nc|ENSG00000163879|O14645-2|DNALI1	nc|ENSG00000163879|O14645-2|DNALI1	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	598.800946	1195.58734	0.41669	0.00024951	3.232	0.0019353	3.6487	0.0021848	598.8027825422475	62.795	0.40972	62.795	62.631	63.041	0	-0.014887	-3.9493E-05	NaN	6.7232	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148150			26697	7549	17739	17907							-0.0026319321921164374
YYPRFSPFFF	10	Unmodified	_YYPRFSPFFF_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	457.8915710449219	3	457.557125	1369.64954	0.13113	6E-05	-0.73478	-0.0003362	-0.60365	-0.0002762	457.89117649968045	46.682	0.29749	46.765	46.666	46.964	0.083092					22	14	2	0	0	0	0.46426	1	9174	9174		2.086	0.63089	1	152180			26698	5189	17740	17908	35815	35815					-0.020494220802220298
YYPSDQKLV	9	Unmodified	_YYPSDQKLV_					0	0	0			REV__ENSG00000178202|ENST00000323468|POGLUT3	REV__ENSG00000178202|ENST00000323468|POGLUT3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	557.28466796875	2	556.784764	1111.55498	0.0069245	3.8555E-06	-0.52604	-0.00029289	-0.51912	-0.00028904	556.7845442239105	45.651	1.092	45.651	45.328	46.42	0					83	37	3	0	0	0	0.32375	1	9156	9156		3.5965	0.31518	1	409050	+		26699	10441	17741	17909	35816	35816					0.0036601937779323634
YYPSFGHL	8	Unmodified	_YYPSFGHL_					0	0	0		ENST00000264538.3_1_3:107937469-107938327:-|nuORF	ENST00000264538.3_1_3:107937469-107938327:-|nuORF	ENST00000264538.3_1_3:107937469-107938327:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.21319580078125	2	492.23471	982.454868	0.20636	0.00010158	-1.281	-0.00063053	-1.0746	-0.00052895	492.2339217302976	51.833	0.51281	51.833	51.562	52.075	0					24	17	2	0	0	0	0.3576	1	10854	10854		5.7604	3.1829	1	53828			26700	5888	17742	17910	35817	35817					-0.037061731653238894
YYPSFLPYF	9	Unmodified	_YYPSFLPYF_					0	0	0		ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44	ENST00000508478.1_1_5:175957081-175957609:-|nuORF	ENST00000508478.1_1_5:175957081-175957609:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.787109375	2	598.786776	1195.559	0.46525	0.00027858	0.32319	0.00019352	0.78843	0.0004721	598.7867393440713	96.989	0.6936	96.989	96.745	97.438	0					95	33	4	0	0	0	0.0065046	5	24637	24637;24639;24683;24687;24768		77.984	48.903	1	1054600			26701	3276	17743	17911	35818;35819;35820;35821;35822	35818					-0.030958911284869828
YYPSFLPYF	9	Unmodified	_YYPSFLPYF_					0	0	0		ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44	ENST00000508478.1_1_5:175957081-175957609:-|nuORF	ENST00000508478.1_1_5:175957081-175957609:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.786865234375	2	598.786776	1195.559	0.43935	0.00026308	0.17218	0.0001031	0.61153	0.00036618	598.7866738355383	96.928	0.84319	96.968	96.745	97.588	0.039772					100	41	3	0	0	0	0.0099477	4	24449	24435;24449;24497;24544		67.344	44.608	1	1021600			26702	3276	17743	17911	35823;35824;35825;35826	35824					-0.030958911284869828
YYPYVYYKI	9	Unmodified	_YYPYVYYKI_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	636.8235473632812	2	636.320983	1270.62741	0.37552	0.00023895	0.057685	3.6706E-05	0.43321	0.00027566	636.320931876476	63.49	0.4453	63.49	63.317	63.762	0					22	14	2	0	0	0	0.21398	1	14448	14448		16.942	10.219	1	148750			26703	3579	17744	17912	35827	35827					0.0029235345136839896
YYPYVYYKI	9	Unmodified	_YYPYVYYKI_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	636.3234252929688	2	636.320983	1270.62741	0.38258	0.00024344	0.16109	0.0001025	0.54367	0.00034595	636.321206433271	63.448	0.38266	63.519	63.323	63.706	0.071018					20	13	2	0	0	0	0.11022	2	14250	14250;14285		30.225	23.502	1	155420			26704	3579	17744	17912	35828;35829	35828					0.0029235345136839896
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.287841796875	2	578.287671	1154.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.602	1	36.602	36.102	37.102	0								0	0	0	0.00091805	1	6269	6269		86.332	59.448	1				26705	566	17745	17913	35830	35830					-0.010308821105354582
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	578.287841796875	2	578.287671	1154.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.765	1	36.765	36.265	37.265	0								0	0	0	0.010655	1	6318	6318		67.838	46.092	1				26706	566	17745	17913	35831	35831					-0.010308821105354582
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	578.2879028320312	2	578.287671	1154.56079	0.31996	0.00018503	0.77599	0.00044875	1.096	0.00063378	578.2876884796002	36.596	1.5838	36.677	35.486	37.07	0.081715					102	62	3	0	0	0	0.012041	2	6131	6115;6131		63.961	37.077	1	242820			26707	566	17745	17913	35832;35833	35833					-0.010308821105354582
YYQEYGKPM	9	Unmodified	_YYQEYGKPM_					0	0	0			REV__nc|ENSG00000070882|Q9H4L5-4|OSBPL3	REV__nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.34326171875	2	589.762975	1177.5114	0.41836	0.00024673	-0.51444	-0.0003034	-0.096079	-5.6664E-05	589.7621237930124	85.986	0.34921	85.986	85.83	86.179	0					20	13	2	0	0	0	0.25504	1	21295	21295		2.0598	0.21551	1	61129	+		26708	8154	17746	17914	35834	35834					-0.07025913390975802
YYQEYPMSIQ	10	Unmodified	_YYQEYPMSIQ_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	440.8458251953125	3	441.197156	1320.56964	0.32608	0.00014387	-0.21515	-9.4925E-05	0.11093	4.894E-05	441.1970607992891	52.504	0.53875	52.504	52.274	52.813	0					22	18	2	0	0	0	0.3184	1	11024	11024		1.7423	0	1	41116			26709	2889	17747	17915	35835	35835					-0.07782276536363497
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	569.300537109375	2	569.300581	1136.58661	0.1411	8.0331E-05	-0.15443	-8.7918E-05	-0.013328	-7.5874E-06	569.3003966690723	50.488	1.4181	50.488	50.234	51.652	0					119	48	5	0	0	0	0.0010793	2	10472	10472;10517		122.18	80.34	1	1910300			26710	1936	17748	17916	35836;35837	35836					0.023780121317713565
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	569.3005981445312	2	569.300581	1136.58661	0.25649	0.00014602	-0.23891	-0.00013601	0.017575	1.0005E-05	569.3003476487381	50.409	0.89378	50.483	50.263	51.157	0.07312					99	32	5	0	0	0	0.0010793	4	10291	10291;10340;10382;10407		122.18	86.052	1	1782200			26711	1936	17748	17916	35838;35839;35840;35841	35838					0.023780121317713565
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	634.3036499023438	2	634.303321	1266.59209	-0.10688	-6.7796E-05	0.51072	0.00032395	0.40383	0.00025615	634.3035588933341	58.488	2.4128	58.488	58.256	60.669	0					214	90	4	0	0	0	5.4766E-18	13	12906	12859;12906;12951;13002;13051;13080;13095;13152;13198;13245;13290;13346;13393		209.87	209.87	1	4424300			26712	4187	17749	17917	35842;35843;35844;35845;35846;35847;35848;35849;35850;35851;35852;35853;35854	35843					-0.030543090764240333
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	634.3035888671875	2	634.303321	1266.59209	0.17312	0.00010981	0.29731	0.00018859	0.47043	0.00029839	634.3034543107427	58.328	1.9384	58.398	58.184	60.122	0.070477					173	73	4	0	0	0	4.6221E-09	9	12751	12701;12751;12797;12841;12852;12907;12959;13006;13070		168.54	168.54	1	4252100			26713	4187	17749	17917	35855;35856;35857;35858;35859;35860;35861;35862;35863	35856					-0.030543090764240333
YYQPYEIP	8	Unmodified	_YYQPYEIP_					0	0	0		ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	537.2761840820312	2	536.752933	1071.49131	0.1066	5.7219E-05	-0.21147	-0.00011351	-0.10487	-5.6287E-05	536.7528616017146	58.373	0.33119	58.373	58.263	58.595	0					15	11	2	0	0	0	0.35759	1	12909	12909		9.3474	1.4373	1	92207			26714	4843	17750	17918	35864	35864					-0.041573410592718574
YYQPYEIP	8	Unmodified	_YYQPYEIP_					0	0	0		ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	536.752933	1071.49131	0.46182	0.00024788	-0.75418	-0.00040481	-0.29236	-0.00015693	536.7525485462897	58.278	0.49356	58.349	57.922	58.415	0.070477	-0.012223	-0.00011867	NaN	9.3474	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87640			26715	4843	17750	17918							-0.041573410592718574
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-3|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	575.7725219726562	2	575.774396	1149.53424	-0.11504	-6.624E-05	-1.6168	-0.00093093	-1.7319	-0.00099717	575.7737472983603	58.713	0.43855	58.713	58.572	59.01	0					36	15	3	0	0	0	0.0045978	3	12962	12932;12962;12969		87.258	51.131	1	367980			26716	4033	17751	17919	35865;35866;35867	35866					-0.03454571001839213
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-3|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	575.773193359375	2	575.774396	1149.53424	0.20048	0.00011543	-2.0773	-0.0011961	-1.8769	-0.0010806	575.7731758456046	58.693	0.54889	58.763	58.446	58.995	0.070477					33	14	3	0	0	0	0.0045978	2	12809	12809;12843		87.258	51.131	1	370770			26717	4033	17751	17919	35868;35869	35868					-0.03454571001839213
YYQYRTIE	8	Unmodified	_YYQYRTIE_					0	0	0			REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	568.2615966796875	2	568.274564	1134.53457	0.13495	7.6687E-05	-0.028625	-1.6267E-05	0.10632	6.042E-05	568.2745285418675	49.056	0.27809	49.056	48.945	49.223	0					15	9	2	0	0	0	0.49441	2	10011	10011;10058		13.508	5.5977	1	80277	+		26718	8153	17752	17920	35870;35871	35870					-0.0273115128200061
YYQYRTIE	8	Unmodified	_YYQYRTIE_					0	0	0			REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	568.261962890625	2	568.274564	1134.53457	0.050079	2.8459E-05	-0.53388	-0.00030339	-0.4838	-0.00027493	568.2748722048461	48.975	0.34394	49.051	48.872	49.216	0.076603					27	12	3	0	0	0	0.49441	1	9859	9859		13.508	5.5977	1	74324	+		26719	8153	17752	17920	35872	35872					-0.0273115128200061
YYRHVIKEA	9	Unmodified	_YYRHVIKEA_					0	0	0			REV__nc|ENSG00000103381|Q9BRF8-2|CPPED1	REV__nc|ENSG00000103381|Q9BRF8-2|CPPED1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.8206787109375	2	589.819473	1177.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.02	1	107.05	106.55	107.55	0.025711								0	0	0	0.28409	1	27413	27413		2.3027	0	1		+		26720	8476	17753	17921	35873	35873					0.04268523117252698
YYRIEMTV	8	Unmodified	_YYRIEMTV_					0	0	0		ENST00000344756.8_1_7:155100763-155100898:+|nuORF	ENST00000344756.8_1_7:155100763-155100898:+|nuORF	ENST00000344756.8_1_7:155100763-155100898:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.315673828125	2	537.76806	1073.52157	0.63013	0.00033886	-0.57966	-0.00031172	0.050467	2.714E-05	537.7677415497119	63.695	0.75338	63.766	63.477	64.23	0.071018					45	25	3	0	0	0	0.30922	1	14353	14353		44.407	4.4497	1	537720			26721	6100	17754	17922	35874	35874					-0.01225305665752785
YYRKSLDHF	9	Unmodified	_YYRKSLDHF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	409.9056396484375	3	410.208495	1227.60366	-0.12462	-5.1121E-05	4.1803	0.0017148	4.0557	0.0016637	410.2107444423956	34.33	0.7498	34.407	33.968	34.718	0.076244					63	31	4	0	0	0	0.25259	1	5488	5488		7.609	2.7119	1	53600	+		26722	9323	17755	17923	35875	35875					-0.001040672624412764
YYRPRFFLL	9	Unmodified	_YYRPRFFLL_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	638.316650390625	2	637.855858	1273.69716	0.54898	0.00035017	-0.84622	-0.00053977	-0.29725	-0.0001896	637.8552957390334	65.339	0.71621	65.339	65.137	65.853	0					56	25	3	0	0	0	0.25594	1	15005	15005		4.3292	1.0479	1	244800			26723	2499	17756	17924	35876	35876					0.07126276910662455
YYRPRFFLL	9	Unmodified	_YYRPRFFLL_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	425.572998046875	3	425.572998	1273.69716	0.33154	0.00014109	-0.25257	-0.00010749	0.078967	3.3606E-05	425.5728772093138	65.285	2.0802	65.354	65.134	67.214	0.068916					221	79	5	0	0	0	0.11198	2	14811	14811;14862		29.841	18.942	1	3057000			26724	2499	17756	17924	35877;35878	35877					0.07126276910662455
YYRPRFFLL	9	Unmodified	_YYRPRFFLL_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	637.8558959960938	2	637.855858	1273.69716	0.41706	0.00026602	-0.31443	-0.00020056	0.10262	6.5459E-05	637.8556820813905	65.314	0.80686	65.383	65.134	65.941	0.068916					59	31	3	0	0	0	0.26104	1	14840	14840		11.64	5.9084	1	476120			26725	2499	17756	17924	35879	35879					0.07126276910662455
YYRRLFPY	8	Unmodified	_YYRRLFPY_					0	0	0		ENST00000546761.5_1_12:57139854-57146049:-|nuORF;ENST00000548173.5_1_12:57140708-57146082:-|nuORF;ENSG00000198056|ENST00000338193|PRIM1	ENST00000546761.5_1_12:57139854-57146049:-|nuORF	ENST00000546761.5_1_12:57139854-57146049:-|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.31494140625	2	589.311284	1176.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.57	1	105.6	105.1	106.1	0.029739								0	0	0	0.38822	1	27016	27016		5.7604	1.0044	1				26726	5342	17757	17925	35880	35880					0.026774419511411907
YYRSMAPSKW	10	Unmodified	_YYRSMAPSKW_					0	0	0			REV__ENSG00000133302|ENST00000265140|SLF1	REV__ENSG00000133302|ENST00000265140|SLF1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	644.3116455078125	2	644.81079	1287.60703	0.12065	7.7794E-05	3.5318	0.0022774	3.6525	0.0023552	644.8130537984717	69.3	0.32237	69.362	69.233	69.556	0.062126					14	11	2	0	0	0	0.31783	1	16047	16047		3.9444	0.66309	1	97200	+		26727	9148	17758	17926	35881	35881					-0.025271404800832897
YYRYFELRP	9	Unmodified	_YYRYFELRP_					0	0	0			REV__ENSG00000112759|ENST00000371755|SLC29A1	REV__ENSG00000112759|ENST00000371755|SLC29A1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	435.7374572753906	3	436.224146	1305.65061	0.40244	0.00017556	-1.0174	-0.0004438	-0.61493	-0.00026825	436.2237910138677	37.113	1.0879	37.113	36.776	37.864	0					58	40	2	0	0	0	0.25974	1	6489	6489		0.96228	0.18574	1	33786	+		26728	8723	17759	17927	35882	35882					0.010007922887098175
YYRYQLNL	8	Unmodified	_YYRYQLNL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.789306640625	2	566.792924	1131.57129	-0.12284	-6.9627E-05	-1.0538	-0.00059731	-1.1767	-0.00066694	566.7919079550753	33.335	0.91321	33.335	32.826	33.739	0					67	34	3	0	0	0	0.53817	1	5199	5199		2.5775	0	1	73978			26729	2205;3441	17760	17928	35883	35883					0.01077145334556917
YYRYQLNL	8	Unmodified	_YYRYQLNL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.788330078125	2	566.792924	1131.57129	-0.061526	-3.4872E-05	-0.49925	-0.00028297	-0.56078	-0.00031785	566.7922909312598	33.26	0.75069	33.335	32.914	33.665	0.074322					59	29	3	0	0	0	0.53817	1	5023	5023		2.5775	0	1	70884			26730	2205;3441	17760	17928	35884	35884					0.01077145334556917
YYSEADASHC	10	Unmodified	_YYSEADASHC_					0	0	0		ENSG00000058404|ENST00000395749|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000070808|Q9UQM7|CAMK2A;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;ENST00000508662.5_1_5:149618053-149669203:-|nuORF;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;ENSG00000145349|ENST00000511664|CAMK2D;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000070808|ENST00000671881|CAMK2A;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D	ENSG00000058404|ENST00000395749|CAMK2B	ENSG00000058404|ENST00000395749|CAMK2B	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	573.2119750976562	2	573.213846	1144.41314	0.30352	0.00017398	-1.8752	-0.0010749	-1.5717	-0.00090093	573.2127436523373	46.994	0.48169	47.077	46.815	47.297	0.083096					30	18	2	0	0	0	0.46554	1	9261	9261		1.8442	0	1	88185			26731	628	17761	17929	35885	35885					-0.153291417067976
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	414.8681335449219	3	414.86825	1241.58292	0.051985	2.1567E-05	-0.36195	-0.00015016	-0.30996	-0.00012859	414.868063031829	39.982	1.0387	39.982	39.748	40.787	0					117	36	5	0	0	0	0.18939	1	7285	7285		30.431	23.33	1	395640			26732	3095	17762	17930	35886	35886					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	621.7989501953125	2	621.798737	1241.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.022	1	40.022	39.522	40.522	0								0	0	0	0.33599	1	7300	7300		4.897	2.5943	1				26733	3095	17762	17930	35887	35887					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	414.8681335449219	3	414.86825	1241.58292	-0.17299	-7.1768E-05	0.022332	9.265E-06	-0.15066	-6.2503E-05	414.86823682365787	39.857	1.0752	39.946	39.695	40.77	0.088566					112	40	5	0	0	0	0.086538	2	7116	7116;7158		41.347	34.245	1	548790			26734	3095	17762	17930	35888;35889	35888					-0.028206576420870988
YYSKFFDLI	9	Unmodified	_YYSKFFDLI_					0	0	0		ENST00000493430.5_1_2:86358220-86360412:+|nuORF;ENST00000469585.5_1_2:86355098-86362111:+|nuORF;ENST00000487043.5_1_2:86355098-86363686:+|nuORF;nc|ENSG00000132300|Q96EY7-2|PTCD3;ENSG00000132300|ENST00000254630|PTCD3	ENST00000493430.5_1_2:86358220-86360412:+|nuORF	ENST00000493430.5_1_2:86358220-86360412:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3052978515625	2	598.305332	1194.59611	0.27618	0.00016524	0.39701	0.00023754	0.67319	0.00040277	598.3054112571084	77.297	0.76353	77.297	76.921	77.685	0					52	33	2	0	0	0	0.034936	1	18591	18591		47.594	14.809	1	979870			26735	2562	17763	17931	35890	35890					0.006597804172997712
YYSKFFDLI	9	Unmodified	_YYSKFFDLI_					0	0	0		ENST00000493430.5_1_2:86358220-86360412:+|nuORF;ENST00000469585.5_1_2:86355098-86362111:+|nuORF;ENST00000487043.5_1_2:86355098-86363686:+|nuORF;nc|ENSG00000132300|Q96EY7-2|PTCD3;ENSG00000132300|ENST00000254630|PTCD3	ENST00000493430.5_1_2:86358220-86360412:+|nuORF	ENST00000493430.5_1_2:86358220-86360412:+|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.30517578125	2	598.305332	1194.59611	0.33102	0.00019805	0.86016	0.00051464	1.1912	0.00071269	598.8075682890851	77.272	0.76906	77.306	76.906	77.675	0.034485					77	32	3	0	0	0	0.018465	2	18397	18397;18405		59.368	28.1	1	1168900			26736	2562	17763	17931	35891;35892	35891					0.006597804172997712
YYSNKAYQY	9	Unmodified	_YYSNKAYQY_					0	0	0		nc|ENSG00000133561|Q6P9H5-2|GIMAP6;ENSG00000133561|ENST00000328902|GIMAP6	nc|ENSG00000133561|Q6P9H5-2|GIMAP6	nc|ENSG00000133561|Q6P9H5-2|GIMAP6	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	600.3341674804688	2	600.272021	1198.52949	0.44224	0.00026546	0.22672	0.00013609	0.66896	0.00040156	600.272060370279	88.584	0.26542	88.584	88.46	88.726	0					24	11	3	0	0	0	0.24791	1	22058	22058		10.074	2.1638	1	91784			26737	2630	17764	17932	35893	35893					-0.06183455144605432
YYSNLHQTF	9	Unmodified	_YYSNLHQTF_					0	0	0		ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.774658203125	2	586.772188	1171.52982	0.53307	0.00031279	2.2718	0.001333	2.8048	0.0016458	586.7740112406415	53.237	1.7216	53.237	52.758	54.48	0					110	66	3	0	0	0	0.22861	1	11303	11303		15.248	1.6336	1	158460			26738	4462	17765	17933	35894	35894					-0.04908035424773516
YYSNLHQTF	9	Unmodified	_YYSNLHQTF_					0	0	0		ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	586.4368896484375	2	586.772188	1171.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.511	1	54.511	54.011	55.011	0								0	0	0	0.23955	1	11687	11687		11.495	3.8858	1				26739	4462	17765	17933	35895	35895					-0.04908035424773516
YYSNLHQTF	9	Unmodified	_YYSNLHQTF_					0	0	0		ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.771484375	2	586.772188	1171.52982	0.84516	0.00049592	2.1307	0.0012503	2.9759	0.0017462	586.773416874086	53.8	0.97867	53.865	53.519	54.498	0.06543					59	40	2	0	0	0	0.27929	1	11497	11497		9.3831	1.473	1	123000			26740	4462	17765	17933	35896	35896					-0.04908035424773516
YYSNLHQTF	9	Unmodified	_YYSNLHQTF_					0	0	0		ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	586.7747802734375	2	586.772188	1171.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.162	1	53.227	52.727	53.727	0.06543								0	0	0	0.23593	1	11139	11139		12.241	4.3305	1				26741	4462	17765	17933	35897	35897					-0.04908035424773516
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	433.56781005859375	3	433.567912	1297.68191	0.13983	6.0627E-05	-0.38146	-0.00016539	-0.24163	-0.00010476	433.5677009139172	50.925	1.0002	50.995	50.738	51.738	0.069874					99	38	4	0	0	0	0.18269	3	10483	10435;10483;10557		32.898	20.723	1	718880			26742	3232	17766	17934	35898;35899;35900	35899					0.04497365322799851
YYSRSRSR	8	Unmodified	_YYSRSRSR_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	537.2763061523438	2	537.775597	1073.53664	0.40728	0.00021902	1.9589	0.0010534	2.3662	0.0012725	537.7767100707918	58.377	0.37266	58.448	58.348	58.721	0.070477					16	12	2	0	0	0	0.3576	1	12725	12725		5.2307	0	1	233280			26743	1860	17767	17935	35901	35901					0.002813222464737919
YYSSPFAFF	9	Unmodified	_YYSSPFAFF_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	564.7553100585938	2	564.755475	1127.4964	0.51676	0.00029184	-0.11535	-6.5142E-05	0.40141	0.0002267	564.7554721329708	93.422	0.44187	93.422	93.157	93.599	0					29	17	2	0	0	0	0.073832	1	23541	23541		38.151	17.698	1	114750			26744	5471	17768	17936	35902	35902					-0.06225037196645644
YYSSPFAFF	9	Unmodified	_YYSSPFAFF_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	564.755475	1127.4964	0.47585	0.00026874	1.1346	0.00064076	1.6104	0.0009095	564.7555395697225	93.336	0.38609	93.374	93.22	93.606	0.037369	-0.024357	0.0011434	NaN	38.151	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107590			26745	5471	17768	17936							-0.06225037196645644
YYSSYYPLV	9	Unmodified	_YYSSYYPLV_					0	0	0			REV__ENSG00000174175|ENST00000263686|SELP	REV__ENSG00000174175|ENST00000263686|SELP	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.772705078125	2	577.773865	1153.53318	0.62395	0.0003605	-3.8333	-0.0022148	-3.2093	-0.0018543	577.7723166078583	80.181	0.33736	80.205	79.936	80.273	0.023605					18	11	2	0	0	0	0.16036	1	19373	19373		23.148	0	1	150410	+		26746	10339	17769	17937	35903	35903					-0.037447853707590184
YYSYVALSVL	10	Unmodified	_YYSYVALSVL_					0	0	0			REV__ENSG00000175322|ENST00000590202|ZNF519	REV__ENSG00000175322|ENST00000590202|ZNF519	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.7777709960938	2	589.310615	1176.60668	0.18777	0.00011065	2.8781	0.0016961	3.0658	0.0018067	589.3122227378192	105.44	0.20526	105.44	105.42	105.62	0					27	22	2	0	0	0	0.31456	1	27203	27203		14.838	4.0143	1	110190	+		26747	10377	17770	17938	35904	35904					0.02543763071707872
YYSYVALSVL	10	Unmodified	_YYSYVALSVL_					0	0	0			REV__ENSG00000175322|ENST00000590202|ZNF519	REV__ENSG00000175322|ENST00000590202|ZNF519	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.3110961914062	2	589.310615	1176.60668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.59	1	103.63	103.13	104.13	0.03791								0	0	0	0.33487	1	26462	26462		6.2058	0.47393	1		+		26748	10377	17770	17938	35905	35905					0.02543763071707872
YYTASYAKDP	10	Unmodified	_YYTASYAKDP_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.77392578125	2	589.771854	1177.52915	0.47231	0.00027855	3.3062	0.0019499	3.7785	0.0022285	589.7734381609888	94.613	0.3707	94.613	94.466	94.837	0					30	14	3	0	0	0	0.38104	1	23895	23895		13.906	1.6654	1	99704			26749	4548	17771	17939	35906	35906					-0.052508748644640946
YYTDFLITL	9	Unmodified	_YYTDFLITL_					0	0	0		ENST00000462731.1_1_7:94229956-94232691:-|nuORF;ENSG00000127990|ENST00000648936|SGCE;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE	ENST00000462731.1_1_7:94229956-94232691:-|nuORF	ENST00000462731.1_1_7:94229956-94232691:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	574.7972412109375	2	574.79734	1147.58013	0.32935	0.00018931	-0.013582	-7.8071E-06	0.31577	0.0001815	574.7971882314226	96.172	0.69946	96.172	95.978	96.678	0					84	33	4	0	0	0	0.00070411	2	24368	24368;24413		128.37	65.793	1	1654900			26750	2380	17772	17940	35907;35908	35907					0.01224074180390744
YYTDFLITL	9	Unmodified	_YYTDFLITL_					0	0	0		ENST00000462731.1_1_7:94229956-94232691:-|nuORF;ENSG00000127990|ENST00000648936|SGCE;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE	ENST00000462731.1_1_7:94229956-94232691:-|nuORF	ENST00000462731.1_1_7:94229956-94232691:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	574.7971801757812	2	574.79734	1147.58013	0.35339	0.00020313	-0.1039	-5.9724E-05	0.24949	0.00014341	574.7972272779081	96.177	0.52172	96.217	96.005	96.527	0.039772					73	29	4	0	0	0	0.015682	2	24200	24200;24243		61.357	23.182	1	1156400			26751	2380	17772	17940	35909;35910	35909					0.01224074180390744
YYTEAVSPQP	10	Unmodified	_YYTEAVSPQP_					0	0	0			REV__ENST00000505366.1_1_5:32406854-32444764:-|nuORF	REV__ENST00000505366.1_1_5:32406854-32444764:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	577.2810668945312	2	577.771854	1153.52915	0.62395	0.0003605	-0.35204	-0.0002034	0.27191	0.0001571	577.7723166078583	80.181	0.33736	80.205	79.936	80.273	0.023605					18	11	2	0	0	0	0.31565	1	19330	19330		12.241	2.8932	1	150410	+		26752	8071	17773	17941	35911	35911					-0.041468748644547304
YYTEFPTVL	9	Unmodified	_YYTEFPTVL_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	566.7816162109375	2	566.78169	1131.54883	0.7602	0.00043087	-0.76775	-0.00043515	-0.0075487	-4.2785E-06	566.7812223426024	80.183	0.52982	80.183	79.926	80.456	0					48	17	4	0	0	0	0.0045547	1	19531	19531		88.904	48.954	1	1645500			26753	2408	17774	17942	35912	35912					-0.011684988537126628
YYTEFPTVL	9	Unmodified	_YYTEFPTVL_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	566.2883911132812	2	566.78169	1131.54883	0.53772	0.00030477	-1.9505	-0.0011055	-1.4128	-0.00080073	566.7810002486488	80.18	1.3499	80.204	79.848	81.198	0.023605					83	47	3	0	0	0	0.0085079	1	19360	19360		81.613	48.827	1	1031700			26754	2408	17774	17942	35913	35913					-0.011684988537126628
YYTFLTGSLL	10	Unmodified	_YYTFLTGSLL_					0	0	0			REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.8115234375	2	589.310615	1176.60668	0.57386	0.00033818	-0.95305	-0.00056164	-0.37919	-0.00022346	589.3099171382357	99.963	0.25724	99.963	99.859	100.12	0					20	12	2	0	0	0	0.25965	2	25530	25530;25564		26.884	1.4843	1	77696	+		26755	13207	17775	17943	35914;35915	35914					0.02543763071707872
YYTFLTGSLL	10	Unmodified	_YYTFLTGSLL_					0	0	0			REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	589.31201171875	2	589.310615	1176.60668	0.70344	0.00041454	-0.44409	-0.00026171	0.25934	0.00015283	589.3101865456828	99.938	0.29733	99.98	99.903	100.2	0.042831					23	15	2	0	0	0	0.37232	2	25361	25361;25389		14.838	0.93222	1	92821	+		26756	13207	17775	17943	35916;35917	35916					0.02543763071707872
YYTFLTGSLL	10	Unmodified	_YYTFLTGSLL_					0	0	0			REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	589.310615	1176.60668	0.70344	0.00041454	-0.44409	-0.00026171	0.25934	0.00015283	589.3101865456828	99.938	0.29733	99.98	99.903	100.2	0.042831	0.0085162	0.00033872	NaN	26.884	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92821	+		26757	13207	17775	17943							0.02543763071707872
YYTGSLYFL	9	Unmodified	_YYTGSLYFL_					0	0	0			REV__ENSG00000177042|ENST00000397510|TMEM80	REV__ENSG00000177042|ENST00000397510|TMEM80	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8294067382812	2	563.776408	1125.53826	0.39293	0.00022153	-4.3858	-0.0024726	-3.9929	-0.0022511	563.7734112416108	91.874	0.91582	91.911	91.559	92.475	0.036522					48	32	3	0	0	0	0.13538	1	22909	22909		28.487	1.6032	1	218100	+		26758	10421	17776	17944	35918	35918					-0.019484815081341367
YYTIFQMIL	9	Unmodified	_YYTIFQMIL_					0	0	0		ENST00000560626.6_1_15:77402209-77402326:-|nuORF	ENST00000560626.6_1_15:77402209-77402326:-|nuORF	ENST00000560626.6_1_15:77402209-77402326:-|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	596.769287109375	2	596.309561	1190.60457	0.22983	0.00013705	-4.1399	-0.0024686	-3.91	-0.0023316	596.3075816628971	73.958	0.83685	74.006	73.587	74.424	0.048546					70	30	3	0	0	0	0.25845	1	17373	17373		2.0598	0.21551	1	628030			26759	7149	17777	17945	35919	35919					0.016890110622625798
YYTKDYVLL	9	Unmodified	_YYTKDYVLL_					0	0	0		tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	589.812255859375	2	589.310615	1176.60668	0.57386	0.00033818	-0.95305	-0.00056164	-0.37919	-0.00022346	589.3099171382357	99.963	0.25724	99.963	99.859	100.12	0					20	12	2	0	0	0	0.30005	1	25576	25576		6.7232	0	1	77696			26760	13670	17778	17946	35920	35920					0.02543763071707872
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469-3|PLOD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	538.2951049804688	2	538.294768	1074.57498	0.49237	0.00026504	0.26628	0.00014334	0.75865	0.00040838	538.2948797071815	62.799	1.2145	62.799	62.605	63.819	0					119	44	4	0	0	0	0.0050339	2	14230	14230;14446		82.529	44.555	1	1961500			26761	3509	17779	17947	35921;35922	35921					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469-3|PLOD2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	538.294921875	2	538.294768	1074.57498	0.56599	0.00030467	0.23003	0.00012382	0.79602	0.00042849	538.2947896754309	62.726	1.1057	62.799	62.571	63.676	0.072701					106	43	4	0	0	0	0.0050339	1	14064	14064		82.529	44.555	1	1322100			26762	3509	17779	17947	35923	35923					0.04067815108442119
YYTKVYQEI	9	Unmodified	_YYTKVYQEI_					0	0	0		ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000554528.1_1_14:104381385-104387854:-|nuORF;nc|ENSG00000156411|P56378-2|ATP5MJ;ENST00000557260.1_1_14:104380761-104387854:-|nuORF	ENSG00000156411|ENST00000286953|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	603.8057250976562	2	603.805697	1205.59684	0.50895	0.0003073	0.016747	1.0112E-05	0.52569	0.00031742	603.8058246859247	48.035	0.37224	48.035	47.852	48.224	0					20	12	2	0	0	0	0.15482	1	9715	9715		23.79	9.8837	1	101050			26763	3623	17780	17948	35924	35924					0.002265750663354993
YYTKVYQEI	9	Unmodified	_YYTKVYQEI_					0	0	0		ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000554528.1_1_14:104381385-104387854:-|nuORF;nc|ENSG00000156411|P56378-2|ATP5MJ;ENST00000557260.1_1_14:104380761-104387854:-|nuORF	ENSG00000156411|ENST00000286953|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	603.805697	1205.59684	0.77959	0.00047072	-0.39252	-0.00023701	0.38707	0.00023372	604.3072619642942	47.946	0.34218	48.026	47.843	48.185	0.080032	-0.0044048	-0.00026956	NaN	23.79	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82206			26764	3623	17780	17948							0.002265750663354993
YYTLGDSACTF	11	Unmodified	_YYTLGDSACTF_					0	0	0			REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.7636108398438	2	620.763171	1239.51179	-0.32768	-0.00020341	0.84117	0.00052217	0.5135	0.00031876	620.7638098206764	59.098	1.0612	59.098	58.595	59.656	0					73	35	3	0	0	0	0.34344	1	13078	13078		13.042	0	1	432920	+		26765	9002	17781	17949	35925	35925					-0.09838538461781354
YYTLGDSACTF	11	Unmodified	_YYTLGDSACTF_					0	0	0			REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	620.7633056640625	2	620.763171	1239.51179	0.011282	7.0036E-06	-0.048226	-2.9937E-05	-0.036943	-2.2933E-05	620.7632435244748	60.852	1.0512	60.852	60.456	61.508	0					92	38	3	0	0	0	0.29897	2	13588	13588;13635		18.146	7.2474	1	517360	+		26766	9002	17781	17949	35926;35927	35926					-0.09838538461781354
YYTLGDSACTF	11	Unmodified	_YYTLGDSACTF_					0	0	0			REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.7632446289062	2	620.763171	1239.51179	-0.083211	-5.1654E-05	-0.36348	-0.00022564	-0.44669	-0.00027729	620.763379397375	59.01	1.2185	59.081	58.691	59.91	0.070477					67	47	3	0	0	0	0.38057	1	12901	12901		8.7454	0.58988	1	360110	+		26767	9002	17781	17949	35928	35928					-0.09838538461781354
YYTLGDSACTF	11	Unmodified	_YYTLGDSACTF_					0	0	0			REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	620.7634887695312	2	620.763171	1239.51179	-0.032855	-2.0395E-05	-0.38726	-0.0002404	-0.42012	-0.00026079	620.7632197318931	60.741	1.0251	60.814	60.427	61.453	0.073418					79	35	3	0	0	0	0.38057	1	13411	13411		8.7454	3.4485	1	428030	+		26768	9002	17781	17949	35929	35929					-0.09838538461781354
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		PTBP3-SUSD1|8|fusion;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;PTBP3-SUSD1|6|fusion;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;PTBP3-SUSD1|7|fusion;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;nc|ENSG00000119314|O95758-5|PTBP3;PTBP3-SUSD1|9|fusion;nc|ENSG00000119314|O95758-4|PTBP3	PTBP3-SUSD1|8|fusion	PTBP3-SUSD1|8|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7902221679688	2	552.78985	1103.56515	0.36354	0.00020096	0.36115	0.00019964	0.72469	0.0004006	552.7899720716119	58.078	0.36229	58.078	57.855	58.217	0					43	12	4	0	0	0	1.3047E-05	2	12793	12745;12793		146.01	109.96	1	1180700			26769	2062	17782	17950	35930;35931	35931					0.01750627103047009
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		PTBP3-SUSD1|8|fusion;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;PTBP3-SUSD1|6|fusion;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;PTBP3-SUSD1|7|fusion;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;nc|ENSG00000119314|O95758-5|PTBP3;PTBP3-SUSD1|9|fusion;nc|ENSG00000119314|O95758-4|PTBP3	PTBP3-SUSD1|8|fusion	PTBP3-SUSD1|8|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	552.7900390625	2	552.78985	1103.56515	0.19066	0.00010539	0.31658	0.000175	0.50724	0.0002804	552.7899306271505	58.368	0.24983	58.368	58.256	58.506	0					23	9	3	0	0	0	0.024893	2	12883	12836;12883		54.774	38.926	1	237190			26770	2062	17782	17950	35932;35933	35933					0.01750627103047009
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		PTBP3-SUSD1|8|fusion;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;PTBP3-SUSD1|6|fusion;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;PTBP3-SUSD1|7|fusion;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;nc|ENSG00000119314|O95758-5|PTBP3;PTBP3-SUSD1|9|fusion;nc|ENSG00000119314|O95758-4|PTBP3	PTBP3-SUSD1|8|fusion	PTBP3-SUSD1|8|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	552.7901000976562	2	552.78985	1103.56515	0.44291	0.00024484	0.22539	0.00012459	0.6683	0.00036943	552.7898672351893	58.011	0.6192	58.079	57.825	58.444	0.068375					70	23	4	0	0	0	0.0043406	2	12591	12591;12687		97.075	73.926	1	885910			26771	2062	17782	17950	35934;35935	35934					0.01750627103047009
YYTSKGLKP	9	Unmodified	_YYTSKGLKP_					0	0	0			REV__ENST00000367926.8_1_1:162535868-162535952:+|nuORF	REV__ENST00000367926.8_1_1:162535868-162535952:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.7905883789062	2	528.78985	1055.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.011	1	19.101	18.601	19.601	0.089705								0	0	0	0.29525	1	1176	1176		0	0	1		+		26772	11569	17783	17951	35936	35936					0.03958627103065737
YYTSLEKGFD	10	Unmodified	_YYTSLEKGFD_					0	0	0		tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	612.2688598632812	2	611.784961	1221.55537	0.18154	0.00011106	4.3666	0.0026714	4.5482	0.0027825	612.290004391876	68.98	0.26061	69.042	68.821	69.082	0.062126					11	9	2	0	0	0	0.36288	1	15900	15900		15.847	7.2539	1	240160			26773	13458	17784	17952	35937	35937					-0.046546056929855695
YYTSRPALF	9	Unmodified	_YYTSRPALF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	559.2869873046875	2	559.287474	1116.5604	0.49162	0.00027496	-0.85853	-0.00048017	-0.36691	-0.00020521	559.2866057123097	52.71	0.44716	52.778	52.548	52.996	0.067169					25	17	2	0	0	0	0.11547	1	11000	11000		29.082	13.234	1	94097			26774	1375	17785	17953	35938	35938					0.0067774296028346726
YYTSRPALF	9	Unmodified	_YYTSRPALF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		2	559.287474	1116.5604	0.28406	0.00015887	0.085162	4.763E-05	0.36922	0.0002065	559.2876288803579	52.807	0.42013	52.807	52.616	53.036	0	0.014752	0.00049571	NaN	29.082	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75809			26775	1375	17785	17953							0.0067774296028346726
YYTTPIYRF	9	Unmodified	_YYTTPIYRF_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.6744995117188	2	612.308406	1222.60226	0.22123	0.00013546	-0.19816	-0.00012134	0.023073	1.4128E-05	612.3079404308329	59.909	0.39357	59.909	59.758	60.152	0					18	13	2	0	0	0	0.25281	1	13395	13395		6.7232	2.7788	1	91587			26776	1444	17786	17954	35939	35939					-0.00013701351213057933
YYTTPIYRF	9	Unmodified	_YYTTPIYRF_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-MATCH	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2		2	612.308406	1222.60226	0.095276	5.8339E-05	0.041691	2.5528E-05	0.13697	8.3866E-05	612.3081143475109	59.79	0.39025	59.862	59.675	60.065	0.072338	-0.023444	0.00012177	NaN	6.7232	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108350			26777	1444	17786	17954							-0.00013701351213057933
YYTVRNFTL	9	Unmodified	_YYTVRNFTL_					0	0	0		PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1-TSPAN33|2|fusion;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|3|fusion	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	588.806884765625	2	588.806031	1175.59751	0.55874	0.00032899	-0.0028185	-1.6595E-06	0.55592	0.00032733	588.8061264986519	59.907	0.6048	59.907	59.758	60.363	0					46	21	3	0	0	0	0.023873	2	13322	13322;13372		55.503	27.016	1	334530			26778	1513	17787	17955	35940;35941	35940					0.01673414506035442
YYTVRNFTL	9	Unmodified	_YYTVRNFTL_					0	0	0		PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1-TSPAN33|2|fusion;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|3|fusion	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	588.8073120117188	2	588.806031	1175.59751	0.41469	0.00024417	0.67291	0.00039622	1.0876	0.00064038	588.8064921836939	59.84	0.50615	59.912	59.756	60.262	0.072338					37	18	3	0	0	0	0.018465	2	13162	13162;13222		59.368	30.882	1	315090			26779	1513	17787	17955	35942;35943	35942					0.01673414506035442
YYVAVDEAQL	10	Unmodified	_YYVAVDEAQL_					0	0	0			REV__nc|ENSG00000211598|P06312|IGKV4-1	REV__nc|ENSG00000211598|P06312|IGKV4-1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.7880859375	2	585.787504	1169.56045	0.55593	0.00032566	0.81988	0.00048028	1.3758	0.00080594	585.7877936447086	96.172	0.31175	96.172	96.048	96.359	0					27	14	3	0	0	0	0.44246	1	24432	24432		6.2058	1.8765	1	255540	+		26780	12876	17788	17956	35944	35944					-0.017543018303967983
YYVAVDEAQL	10	Unmodified	_YYVAVDEAQL_					0	0	0			REV__nc|ENSG00000211598|P06312|IGKV4-1	REV__nc|ENSG00000211598|P06312|IGKV4-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.787504	1169.56045	0.55593	0.00032566	0.81988	0.00048028	1.3758	0.00080594	585.7877936447086	96.172	0.31175	96.172	96.048	96.359	0					27	14	3	0	0	0	0.31616	1	24361	24361		10.074	0.6908	1	255540	+		26781	12876	17788	17956	35945	35945					-0.017543018303967983
YYVAVDEAQL	10	Unmodified	_YYVAVDEAQL_					0	0	0			REV__nc|ENSG00000211598|P06312|IGKV4-1	REV__nc|ENSG00000211598|P06312|IGKV4-1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.7879028320312	2	585.787504	1169.56045	0.72246	0.00042321	0.8472	0.00049628	1.5697	0.00091949	585.7878047861606	96.146	0.3581	96.186	96.005	96.363	0.039772					31	19	3	0	0	0	0.38912	1	24210	24210		13.042	0.80181	1	167870	+		26782	12876	17788	17956	35946	35946					-0.017543018303967983
YYVAVDEAQL	10	Unmodified	_YYVAVDEAQL_					0	0	0			REV__nc|ENSG00000211598|P06312|IGKV4-1	REV__nc|ENSG00000211598|P06312|IGKV4-1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	585.813720703125	2	585.787504	1169.56045	0.72246	0.00042321	0.8472	0.00049628	1.5697	0.00091949	585.7878047861606	96.146	0.3581	96.186	96.005	96.363	0.039772					31	19	3	0	0	0	0.30896	1	24238	24238		18.146	1.9972	1	167870	+		26783	12876	17788	17956	35947	35947					-0.017543018303967983
YYVCRKHI	8	Unmodified	_YYVCRKHI_					0	0	0			REV__nc|ENSG00000087266|P78314-2|SH3BP2	REV__nc|ENSG00000087266|P78314-2|SH3BP2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	541.7864379882812	2	541.284211	1080.55387	-0.095365	-5.162E-05	2.0914	0.0011321	1.9961	0.0010804	541.2853882443941	29.656	0.28609	29.656	29.535	29.821	0					22	14	2	0	0	0	0.53817	1	4187	4187		2.5775	0	1	24591	+		26784	8280	17789	17957	35948	35948					0.016815265279319647
YYVDFFKTL	9	Unmodified	_YYVDFFKTL_					0	0	0		nc|ENSG00000132406|Q5BJH2-2|TMEM128;ENSG00000132406|ENST00000382753|TMEM128	nc|ENSG00000132406|Q5BJH2-2|TMEM128	nc|ENSG00000132406|Q5BJH2-2|TMEM128	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	598.3052368164062	2	598.305332	1194.59611	0.27618	0.00016524	0.39701	0.00023754	0.67319	0.00040277	598.3054112571084	77.297	0.76353	77.297	76.921	77.685	0					52	33	2	0	0	0	0.00090591	1	18636	18636		125.04	75.483	1	979870			26785	2572	17790	17958	35949	35949					0.006597804172997712
YYVDFFKTL	9	Unmodified	_YYVDFFKTL_					0	0	0		nc|ENSG00000132406|Q5BJH2-2|TMEM128;ENSG00000132406|ENST00000382753|TMEM128	nc|ENSG00000132406|Q5BJH2-2|TMEM128	nc|ENSG00000132406|Q5BJH2-2|TMEM128	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	598.8078002929688	2	598.305332	1194.59611	0.33102	0.00019805	0.86016	0.00051464	1.1912	0.00071269	598.8075682890851	77.272	0.76906	77.306	76.906	77.675	0.034485					77	32	3	0	0	0	0.0045224	2	18472	18451;18472		90.135	61.64	1	1168900			26786	2572	17790	17958	35950;35951	35951					0.006597804172997712
YYVFDKFI	8	Unmodified	_YYVFDKFI_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	547.7820434570312	2	547.781493	1093.54843	0.36016	0.00019729	-2.3824	-0.001305	-2.0222	-0.0011077	547.7802541034515	96.096	0.35416	96.096	95.925	96.279	0					42	18	3	0	0	0	0.4772	1	24331	24331		15.847	2.3393	1	197770			26787	2683	17791	17959	35952	35952					0.005401262171062626
YYVFPYLRN	9	Unmodified	_YYVFPYLRN_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	618.3224487304688	2	617.816399	1233.61824	-0.17528	-0.00010829	3.635	0.0022458	3.4598	0.0021375	618.3209339997312	74.256	1.4875	74.256	73.661	75.148	0					106	54	3	0	0	0	0.25504	1	17566	17566		4.756	0.81161	1	294460			26788	3094	17792	17960	35953	35953					0.010780048856986468
YYVGFAYLM	9	Oxidation (M)	_YYVGFAYLM(Oxidation (M))_		YYVGFAYLM(1)		YYVGFAYLM(46)	0	0	1		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	571.7640991210938	2	571.764986	1141.51542	0.4423	0.00025289	-0.75665	-0.00043263	-0.31435	-0.00017974	571.7643753403952	81.561	0.74141	81.583	81.134	81.876	0.021866					37	26	2	0	0	0	0.038949	1	19767	19767		45.75	27.604	1	113500			26789	1162	17793	17961	35954	35954		65			-0.049678238972774125
YYVKRQPAIQ	10	Unmodified	_YYVKRQPAIQ_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	421.87274169921875	3	422.571545	1264.69281	0.17534	7.4094E-05	0.037657	1.5913E-05	0.213	9.0007E-05	422.5715640923205	48.324	0.32272	48.404	48.248	48.571	0.080029					17	10	2	0	0	0	0.31851	1	9718	9718		0.77653	0	1	91457			26790	2366	17794	17962	35955	35955					0.07104767697092029
YYVPRGFWKQF	11	Unmodified	_YYVPRGFWKQF_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	497.5909423828125	3	497.590828	1489.75066	0.47901	0.00023835	-0.00049371	-2.4567E-07	0.47852	0.00023811	497.9251295103547	62.453	0.7141	62.453	62.255	62.969	0					57	25	3	0	0	0	0.17416	1	14108	14108		34.222	29.816	1	427600			26791	1840	17795	17963	35956	35956					0.025370296224991762
YYVPRGFWKQF	11	Unmodified	_YYVPRGFWKQF_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	497.5909118652344	3	497.590828	1489.75066	0.42087	0.00020942	-0.4317	-0.00021481	-0.010839	-5.3932E-06	497.59053920944024	62.362	0.69841	62.435	62.235	62.934	0.072701					57	24	3	0	0	0	0.22106	2	13917	13917;13968		27.088	22.972	1	600470			26792	1840	17795	17963	35957;35958	35957					0.025370296224991762
YYVRAVLHL	9	Unmodified	_YYVRAVLHL_					0	0	0		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	567.3270263671875	2	567.326934	1132.63931	0.13963	7.9215E-05	0.22803	0.00012936	0.36765	0.00020858	567.3269594796127	52.813	0.84885	52.813	52.584	53.433	0					83	32	4	0	0	0	0.0076571	1	11167	11167		74.423	42.306	1	802890			26793	588	17796	17964	35959	35959					0.07830014985233902
YYVRAVLHL	9	Unmodified	_YYVRAVLHL_					0	0	0		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	567.3270874023438	2	567.326934	1132.63931	0.29742	0.00016873	0.14336	8.1333E-05	0.44078	0.00025006	567.3268864119863	52.754	0.87217	52.821	52.578	53.45	0.067173					90	38	4	0	0	0	0.0076571	2	11013	11013;11061		74.423	42.306	1	858160			26794	588	17796	17964	35960;35961	35960					0.07830014985233902
YYVRAWVVF	9	Unmodified	_YYVRAWVVF_					0	0	0		DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24	DHCR24-PCNXL2|1|fusion	DHCR24-PCNXL2|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	601.8218994140625	2	601.821484	1201.62842	0.48253	0.00029039	4.0904	0.0024617	4.5729	0.0027521	601.8217411221062	74.412	1.5809	74.412	74.03	75.611	0					246	59	6	0	0	0	0.0076571	3	17685	17685;17885;17970		74.423	59.584	1	2674200			26795	276	17797	17965	35962;35963;35964	35962					0.03566612610916309
YYVRAWVVF	9	Unmodified	_YYVRAWVVF_					0	0	0		DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24	DHCR24-PCNXL2|1|fusion	DHCR24-PCNXL2|1|fusion	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	601.8219604492188	2	601.821484	1201.62842	0.56386	0.00033934	3.9514	0.0023781	4.5153	0.0027174	601.8216653591478	74.231	1.582	74.28	74.042	75.624	0.048546					208	57	6	0	0	0	0.011655	9	17523	17523;17552;17585;17685;17727;17737;17777;17789;17797		64.236	46.09	1	2843200			26796	276	17797	17965	35965;35966;35967;35968;35969;35970;35971;35972;35973	35965					0.03566612610916309
YYVRILSTI	9	Unmodified	_YYVRILSTI_					0	0	0		nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	nc|ENSG00000013275|P43686-2|PSMC4	nc|ENSG00000013275|P43686-2|PSMC4	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	563.8108520507812	2	564.326599	1126.63865	0.45728	0.00025805	-1.0741	-0.00060613	-0.6168	-0.00034808	564.3258821938743	65.161	0.59886	65.23	65.087	65.686	0.068916					43	23	3	0	0	0	0.13858	1	14757	14757		31.268	18.226	1	351250			26797	444	17798	17966	35974	35974					0.08039175545536636
YYVSKIVI	8	Unmodified	_YYVSKIVI_					0	0	0		ENSG00000189099|ENST00000455694|PRSS48	ENSG00000189099|ENST00000455694|PRSS48	ENSG00000189099|ENST00000455694|PRSS48	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	492.7923583984375	2	492.791861	983.569169	0.52031	0.00025641	-0.17017	-8.3856E-05	0.35015	0.00017255	492.79168124545754	96.897	0.52441	96.897	96.632	97.156	0					53	26	3	0	0	0	0.50159	1	24658	24658		12.532	0	1	454820			26798	5192	17799	17967	35975	35975					0.07672716596766804
YYVSKIVI	8	Unmodified	_YYVSKIVI_					0	0	0		ENSG00000189099|ENST00000455694|PRSS48	ENSG00000189099|ENST00000455694|PRSS48	ENSG00000189099|ENST00000455694|PRSS48	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	492.79205322265625	2	492.791861	983.569169	0.51521	0.00025389	-0.28137	-0.00013865	0.23384	0.00011524	492.79168222475914	96.853	0.55042	96.892	96.657	97.207	0.039764					56	26	3	0	0	0	0.53026	1	24511	24511		7.9102	0	1	422370			26799	5192	17799	17967	35976	35976					0.07672716596766804
YYVSYAVFVV	10	Unmodified	_YYVSYAVFVV_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	605.31298828125	2	605.313158	1208.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.45	1	107.45	106.95	107.95	0								0	0	0	0.33892	1	27735	27735		1.4819	0.8804	1				26800	2757	17800	17968	35977	35977					0.01580066934320712
YYVSYAVFVV	10	Unmodified	_YYVSYAVFVV_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	605.3123168945312	2	605.313158	1208.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.2	1	107.23	106.73	107.73	0.025711								0	0	0	0.33711	1	27459	27459		3.5965	0	1				26801	2757	17800	17968	35978	35978					0.01580066934320712
YYVTELTHRI	10	Unmodified	_YYVTELTHRI_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	432.2309875488281	3	432.231189	1293.67174	0.035975	1.5549E-05	-0.47057	-0.00020339	-0.43459	-0.00018784	432.2310194312577	48.625	0.92838	48.702	48.5	49.428	0.076714					71	32	4	0	0	0	0.32416	2	9750	9750;9796		19.987	9.0879	1	641610			26802	1994	17801	17969	35979;35980	35979					0.036647575975621294
YYVTELTHRI	10	Unmodified	_YYVTELTHRI_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MATCH-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1		3	432.231189	1293.67174	0.33914	0.00014659	-0.8586	-0.00037111	-0.51946	-0.00022453	432.2308905758928	48.746	0.85744	48.746	48.483	49.34	0	0.022288	-0.0002313	NaN	19.987	82	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	696430			26803	1994	17801	17969							0.036647575975621294
YYVWLQHTL	9	Unmodified	_YYVWLQHTL_					0	0	0		nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	612.2686157226562	2	611.816399	1221.61824	0.47095	0.00028814	-0.13017	-7.9642E-05	0.34078	0.0002085	611.8165052419639	67.111	0.90053	67.111	66.871	67.771	0					73	33	3	0	0	0	0.00048792	1	15558	15558		103.35	72.65	1	1353100			26804	331	17802	17970	35981	35981					0.016300048857146976
YYVWLQHTL	9	Unmodified	_YYVWLQHTL_					0	0	0		nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	611.816650390625	2	611.816399	1221.61824	0.6595	0.00040349	-0.076906	-4.7052E-05	0.58259	0.00035644	611.8165309467114	67.072	0.79747	67.137	66.9	67.697	0.065071					61	27	3	0	0	0	0.0021834	1	15377	15377		114.65	83.946	1	1079300			26805	331	17802	17970	35982	35982					0.016300048857146976
YYWCIPES	8	Unmodified	_YYWCIPES_					0	0	0		nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-2|SLC22A2	nc|ENSG00000112499|O15244-2|SLC22A2	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	530.7255859375	2	530.725861	1059.43717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.99	1	105.02	104.52	105.52	0.034004								0	0	0	0.38822	1	26854	26854		0.79363	0	1				26806	1762	17803	17971	35983	35983					-0.09017256482525227
YYWDGAPDLV	10	Unmodified	_YYWDGAPDLV_					0	0	0			REV__ENSG00000183862|ENST00000329903|CNGA2	REV__ENSG00000183862|ENST00000329903|CNGA2	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	599.8023071289062	2	599.774396	1197.53424	0.11268	6.7584E-05	-0.90865	-0.00054499	-0.79597	-0.0004774	599.7738587919135	73.572	0.43531	73.572	73.422	73.857	0					27	15	3	0	0	0	0.31288	1	17523	17523		15.847	5.0233	1	287920	+		26807	10616	17804	17972	35984	35984					-0.05662571001857941
YYYEENEM	8	Unmodified	_YYYEENEM_					0	0	0		ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	570.7132568359375	2	570.713147	1139.41174	-0.53841	-0.00030728	0.50343	0.00028732	-0.034978	-1.9963E-05	570.7132643392791	42.081	1.0191	42.081	41.745	42.764	0					49	35	2	0	0	0	0.5411	1	7982	7982		0.6015	0.6015	1	33075			26808	2416	17805	17973	35985	35985					-0.1523877579559212
YYYGGGGA	8	Unmodified	_YYYGGGGA_					0	0	0		ENSG00000238205|ENST00000423387|MPC1L	ENSG00000238205|ENST00000423387|MPC1L	ENSG00000238205|ENST00000423387|MPC1L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	404.158203125	2	404.169036	806.323519	0.12435	5.026E-05	1.7524	0.00070827	1.8768	0.00075853	404.16962625317444	82.238	0.25063	82.26	82.069	82.32	0.021851					12	8	2	0	0	0	0.53771	1	19953	19953		2.8892	0.58649	1	26056			26809	5637	17806	17974	35986	35986					-0.0873898353321465
YYYIFYVL	8	Unmodified	_YYYIFYVL_					0	0	0			REV__chr15:76775117-76779755|273|11.21|0.02|9.44|-|1|TE_info:L1MDa,L1MDa_dup5830,L1,LINE,donor,+,76779755,76779902|SCAPER,None|3	REV__chr15:76775117-76779755|273|11.21|0.02|9.44|-|1|TE_info:L1MDa,L1MDa_dup5830,L1,LINE,donor,+,76779755,76779902|SCAPER,None|3	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	572.291748046875	2	572.291694	1142.56883	-0.12842	-7.3494E-05	-0.44534	-0.00025486	-0.57376	-0.00032836	572.2912874828808	28.797	0.26472	28.875	28.744	29.008	0.078287					27	17	2	0	0	0	0.54081	1	3850	3850		0.79363	0	1	21977	+		26810	7789	17807	17975	35987	35987					0.0032529687689475395
YYYINYTTI	9	Unmodified	_YYYINYTTI_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	607.291748046875	2	607.292422	1212.57029	0.71988	0.00043718	-1.302	-0.00079072	-0.58216	-0.00035354	607.2910431169645	73.772	0.18321	73.824	73.723	73.906	0.052574					12	6	2	0	0	0	0.2125	1	17414	17414		17.113	6.9623	1	107630			26811	3192	17808	17976	35988	35988					-0.027491138250070435
YYYIWKKMIKF	11	Unmodified	_YYYIWKKMIKF_					0	0	0		nc|ENSG00000118156|Q9H0D2-2|ZNF541;ENSG00000118156|ENST00000391901|ZNF541	nc|ENSG00000118156|Q9H0D2-2|ZNF541	nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	528.7552490234375	3	528.287869	1581.84178	0.42364	0.00022381	0.26353	0.00013922	0.68717	0.00036303	528.622075978361	60.7	0.99099	60.7	60.456	61.447	0					106	35	4	0	0	0	0.31101	1	13737	13737		0.094841	0.011491	1	1268200			26812	2028	17809	17977	35989	35989					0.0741315727559595
YYYIWKKMIKF	11	Unmodified	_YYYIWKKMIKF_					0	0	0		nc|ENSG00000118156|Q9H0D2-2|ZNF541;ENSG00000118156|ENST00000391901|ZNF541	nc|ENSG00000118156|Q9H0D2-2|ZNF541	nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	528.6222534179688	3	528.287869	1581.84178	0.21088	0.0001114	0.37102	0.000196	0.58189	0.00030741	528.2883692043858	60.569	0.9864	60.643	60.427	61.414	0.073421					105	33	5	0	0	0	0.4185	2	13373	13373;13423		0.094841	0.011491	1	1767200			26813	2028	17809	17977	35990;35991	35990					0.0741315727559595
YYYKFFDF	8	Unmodified	_YYYKFFDF_					0	0	0			REV__ENST00000524082.5_1_5:167913503-167919924:+|nuORF	REV__ENST00000524082.5_1_5:167913503-167919924:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	597.2583618164062	2	596.771126	1191.5277	-0.023363	-1.3942E-05	0.50009	0.00029844	0.47672	0.00028449	596.7711932555144	73.555	0.27012	73.555	73.446	73.716	0					18	9	3	0	0	0	0.35759	1	17460	17460		10.074	0	1	101420	+		26814	12313	17810	17978	35992	35992					-0.06040464162583703
YYYKFFDF	8	Unmodified	_YYYKFFDF_					0	0	0			REV__ENST00000524082.5_1_5:167913503-167919924:+|nuORF	REV__ENST00000524082.5_1_5:167913503-167919924:+|nuORF	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	596.3314208984375	2	596.771126	1191.5277	0.3221	0.00019222	0.75046	0.00044786	1.0726	0.00064007	596.771583514973	74.557	0.53474	74.557	74.426	74.961	0					28	19	2	0	0	0	0.3576	1	17863	17863		7.9102	0	1	75517	+		26815	12313	17810	17978	35993	35993					-0.06040464162583703
YYYKLEDMI	9	Unmodified	_YYYKLEDMI_					0	0	0			REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	619.294189453125	2	619.294107	1236.57366	-0.15303	-9.4769E-05	-0.21808	-0.00013506	-0.37111	-0.00022983	619.2938457596703	58.596	0.64738	58.666	58.322	58.969	0.070477					38	22	2	0	0	0	0.3182	1	12775	12775		4.3292	0	1	92631	+		26816	12835	17811	17979	35994	35994					-0.03516187042623642
YYYNNIHKF	9	Unmodified	_YYYNNIHKF_					0	0	0			REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MULTI-SECPEP	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	421.8771667480469	3	421.204862	1260.59276	0.37292	0.00015708	0.76189	0.00032091	1.1348	0.00047799	421.2054097948709	49.923	0.31741	49.923	49.733	50.05	0					15	10	2	0	0	0	0.25952	1	10242	10242		1.1933	0	1	36851	+		26817	13175	17812	17980	35995	35995					-0.02711469636756192
YYYVGFAYL	9	Unmodified	_YYYVGFAYL_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1	1	579.779296875	2	579.778951	1157.54335	0.56523	0.00032771	-0.15622	-9.0573E-05	0.40901	0.00023714	579.7788116311336	88.166	0.92334	88.166	87.948	88.872	0					73	36	3	0	0	0	0.0099253	3	21942	21942;21993;22111		67.413	55.172	1	710360			26818	1162	17813	17981	35996;35997;35998	35996					-0.029121776455212967
YYYVGFAYL	9	Unmodified	_YYYVGFAYL_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	579.7789306640625	2	579.778951	1157.54335	0.48313	0.00028011	-0.00048631	-2.8195E-07	0.48264	0.00027982	579.7788612268955	88.127	0.93584	88.157	87.935	88.871	0.030037					73	36	4	0	0	0	0.0099253	4	21759	21759;21808;21868;21932		67.413	52.831	1	1159200			26819	1162	17813	17981	35999;36000;36001;36002	35999					-0.029121776455212967
YYYYCTFRWRH	11	Unmodified	_YYYYCTFRWRH_					0	0	0			REV__ENST00000444199.1_1_19:55208384-55209490:+|nuORF	REV__ENST00000444199.1_1_19:55208384-55209490:+|nuORF	MSMS	210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2	2	553.250244140625	3	553.250477	1656.7296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.747	1	22.849	22.349	23.349	0.10178								0	0	0	0.34212	1	2105	2105		0	0	1		+		26820	10949	17814	17982	36003	36003					-0.07249303748676539